SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47486 chr2L 52565 52591 jockey 13 5104 4.5 3.0 3.8 2.7 5131 chr2L 47460 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52591 intron Cda5 - chr2L_13_50001 chr2L_50001 RAL-280 2 chr2L 89736 89745 chr2L 89802 89822 6 74 6.5 3.0 4.8 1.0 86 chr2L 89736 intergenic not near genes chr2L 89779 intergenic not near genes chr2L 89822 intergenic not near genes chr2L_6_85001 chr2L_85001 RAL-280 3 chr2L 263305 263330 chr2L 263451 263476 4 146 0.5 2.5 1.5 1.6 171 chr2L 263305 intron,3` UTR CG3645 -,CG17075 - chr2L 263390 intron,3` UTR CG3645 -,CG17075 - chr2L 263476 intron,3` UTR CG3645 -,CG17075 - chr2L_4_260001 chr2L_260001 RAL-280 4 chr2L 297694 297718 chr2L 297787 297817 8 94 0.5 2.0 1.2 3.6 123 chr2L 297694 intergenic Pi3K21B +,Hop + chr2L 297756 intergenic Pi3K21B +,Hop + chr2L 297817 intergenic Pi3K21B +,Hop + chr2L_8_295001 chr2L_295001 RAL-280 5 chr2L 323468 323476 chr2L 323546 323554 4 78 7.0 4.0 5.5 0.6 86 chr2L 323468 intron Plc21C + chr2L 323511 intron Plc21C + chr2L 323554 intron Plc21C + chr2L_4_320001 chr2L_320001 RAL-280 6 chr2L 325128 325157 chr2L 325205 325214 6 69 5.0 1.0 3.0 1.5 86 chr2L 325128 intron Plc21C + chr2L 325171 intron Plc21C + chr2L 325214 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-280 7 chr2L 477820 477851 chr2L 477904 477937 10 83 5.5 8.0 6.8 1.3 117 chr2L 477820 intron,exon ush +,cbt - chr2L 477878 intron,exon ush +,cbt - chr2L 477937 intron,exon ush +,cbt - chr2L_10_475001 chr2L_475001 RAL-280 8 chr2L 632720 632734 chr2L 632785 632814 7 70 0.5 3.5 2.0 2.3 94 chr2L 632720 intergenic not near genes chr2L 632767 intergenic not near genes chr2L 632814 intergenic not near genes chr2L_7_630001 chr2L_630001 RAL-280 9 chr2L 666284 666305 chr2L 666360 666377 7 75 0.5 1.0 0.8 3.9 93 chr2L 666284 intron ds - chr2L 666330 intron ds - chr2L 666377 intron ds - chr2L_7_665001 chr2L_665001 RAL-280 10 chr2L 686922 686951 chr2L 695961 695990 roo 5 9039 1.0 0.5 0.8 2.8 9068 chr2L 686922 intron ds - chr2L 691456 intron ds - chr2L 695990 intron ds - chr2L_5_690001 chr2L_690001 RAL-280 11 chr2L 763605 763626 chr2L 763681 763702 10 76 4.0 1.5 2.8 2.6 97 chr2L 763605 intergenic not near genes chr2L 763654 intergenic not near genes chr2L 763702 intergenic not near genes chr2L_10_760001 chr2L_760001 RAL-280 12 chr2L 770467 770486 chr2L 772248 772266 Bari1 7 1781 6.0 2.5 4.2 1.3 1799 chr2L 770467 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772266 intergenic CR44614 + chr2L_7_770001 chr2L_770001 RAL-280 13 chr2L 779030 779046 chr2L 779121 779144 7 95 4.0 4.0 4.0 1.4 114 chr2L 779030 intergenic CG13947 + chr2L 779087 intergenic CG13947 + chr2L 779144 intergenic CG13947 + chr2L_7_775001 chr2L_775001 RAL-280 14 chr2L 877840 877863 chr2L 877921 877944 14 81 5.0 6.5 5.8 2.1 104 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_14_875001 chr2L_875001 RAL-280 15 chr2L 898364 898398 chr2L 898440 898469 10 74 4.0 3.0 3.5 2.2 105 chr2L 898364 intergenic Lsp1beta +,CR45348 - chr2L 898416 intergenic Lsp1beta +,CR45348 - chr2L 898469 intergenic Lsp1beta +,CR45348 - chr2L_10_895001 chr2L_895001 RAL-280 16 chr2L 923528 923548 chr2L 923714 923732 4 184 0.5 4.5 2.5 1.1 204 chr2L 923528 intron CG4341 + chr2L 923630 intron CG4341 + chr2L 923732 intron CG4341 + chr2L_4_920001 chr2L_920001 RAL-280 17 chr2L 927856 927872 chr2L 928006 928008 5 146 1.5 3.0 2.2 1.6 152 chr2L 927856 intron CG4341 + chr2L 927932 intron CG4341 + chr2L 928008 intron CG4341 + chr2L_5_925001 chr2L_925001 RAL-280 18 chr2L 976880 976911 chr2L 984516 984547 roo 4 7636 1.0 0.5 0.8 2.2 7667 chr2L 976880 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-280 19 chr2L 1035561 1035593 chr2L 1035638 1035670 12 76 1.5 5.5 3.5 2.7 109 chr2L 1035561 intron IA-2 - chr2L 1035616 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_12_1035001 chr2L_1035001 RAL-280 20 chr2L 1083699 1083719 chr2L 1083775 1083795 4 76 1.0 1.5 1.2 1.8 96 chr2L 1083699 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083747 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083795 3` UTR,3` UTR Atg4a +,CG4629 - chr2L_4_1080001 chr2L_1080001 RAL-280 21 chr2L 1126671 1126704 chr2L 1126747 1126780 13 72 3.0 2.5 2.8 3.4 109 chr2L 1126671 intron Pino - chr2L 1126726 intron Pino - chr2L 1126780 intron Pino - chr2L_13_1125001 chr2L_1125001 RAL-280 22 chr2L 1164247 1164272 chr2L 1164333 1164358 9 85 1.5 3.0 2.2 2.8 111 chr2L 1164247 intergenic IntS14 +,CG5080 - chr2L 1164302 intergenic IntS14 +,CG5080 - chr2L 1164358 intergenic IntS14 +,CG5080 - chr2L_9_1160001 chr2L_1160001 RAL-280 23 chr2L 1178688 1178705 chr2L 1178769 1178789 4 83 2.0 3.5 2.8 1.1 101 chr2L 1178688 intron CG4896 + chr2L 1178738 intron CG4896 + chr2L 1178789 intron CG4896 + chr2L_4_1175001 chr2L_1175001 RAL-280 24 chr2L 1220145 1220159 chr2L 1227611 1227625 blood 6 7465 1.0 1.5 1.2 2.7 7480 chr2L 1220145 intron CG42329 + chr2L 1223885 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-280 25 chr2L 1462946 1462974 chr2L 1463067 1463095 6 120 6.5 9.0 7.8 0.7 149 chr2L 1462946 intergenic not near genes chr2L 1463020 intergenic not near genes chr2L 1463095 intergenic not near genes chr2L_6_1460001 chr2L_1460001 RAL-280 26 chr2L 1536501 1536506 chr2L 1536633 1536638 5 132 0.0 6.0 3.0 1.2 137 chr2L 1536501 intergenic not near genes chr2L 1536570 intergenic not near genes chr2L 1536638 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-280 27 chr2L 1536509 1536523 chr2L 1536628 1536655 4 129 0.0 5.5 2.8 1.1 146 chr2L 1536509 intergenic not near genes chr2L 1536582 intergenic not near genes chr2L 1536655 intergenic not near genes chr2L_4_1535001 chr2L_1535001 RAL-280 28 chr2L 1570687 1570709 chr2L 1573558 1573580 F-element 7 2872 2.5 1.0 1.8 2.5 2893 chr2L 1570687 intron haf + chr2L 1572134 intron haf + chr2L 1573580 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-280 29 chr2L 1590959 1590986 chr2L 1591035 1591062 8 76 3.0 2.5 2.8 2.1 103 chr2L 1590959 intron haf + chr2L 1591010 intron haf + chr2L 1591062 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-280 30 chr2L 1635395 1635430 chr2L 1635531 1635566 11 136 0.0 3.0 1.5 4.4 171 chr2L 1635395 intergenic not near genes chr2L 1635480 intergenic not near genes chr2L 1635566 intergenic not near genes chr2L_11_1635001 chr2L_1635001 RAL-280 31 chr2L 1678984 1679004 chr2L 1686449 1686469 blood 5 7465 0.5 3.5 2.0 1.7 7485 chr2L 1678984 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686469 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-280 32 chr2L 1711356 1711383 chr2L 1711678 1711707 mdg3 9 323 0.5 3.5 2.0 3.0 351 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-280 33 chr2L 1721829 1721856 chr2L 1721913 1721940 8 84 0.0 1.5 0.8 4.4 111 chr2L 1721829 intron Rim2 - chr2L 1721884 intron Rim2 - chr2L 1721940 intron Rim2 - chr2L_8_1720001 chr2L_1720001 RAL-280 34 chr2L 1910542 1910567 chr2L 1910630 1910656 6 89 2.0 0.0 1.0 3.0 114 chr2L 1910542 intron CG7337 + chr2L 1910599 intron CG7337 + chr2L 1910656 intron CG7337 + chr2L_6_1910001 chr2L_1910001 RAL-280 35 chr2L 2047802 2047831 chr2L 2047997 2048021 10 193 1.0 0.0 0.5 6.7 219 chr2L 2047802 3` UTR Kebab + chr2L 2047912 3` UTR Kebab + chr2L 2048021 3` UTR Kebab + chr2L_10_2045001 chr2L_2045001 RAL-280 36 chr2L 2100378 2100407 chr2L 2109526 2109558 roo 16 9148 1.0 2.5 1.8 5.7 9180 chr2L 2100378 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_16_2100001 chr2L_2100001 RAL-280 37 chr2L 2112129 2112142 chr2L 2119790 2119804 opus 4 7662 1.0 4.0 2.5 1.1 7675 chr2L 2112129 intergenic not near genes chr2L 2115966 intergenic not near genes chr2L 2119804 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-280 38 chr2L 2311075 2311084 chr2L 2311168 2311168 6 94 0.0 0.0 0.0 6.0 93 chr2L 2311075 intron CG9967 - chr2L 2311122 intron CG9967 - chr2L 2311168 intron CG9967 - chr2L_6_2310001 chr2L_2310001 RAL-280 39 chr2L 2427394 2427401 chr2L 2427479 2427487 5 86 4.0 2.5 3.2 1.2 93 chr2L 2427394 3` UTR CR44912 - chr2L 2427440 3` UTR CR44912 - chr2L 2427487 3` UTR CR44912 - chr2L_5_2425001 chr2L_2425001 RAL-280 40 chr2L 2591154 2591186 chr2L 2591236 2591268 9 80 2.0 3.5 2.8 2.4 114 chr2L 2591154 intergenic not near genes chr2L 2591211 intergenic not near genes chr2L 2591268 intergenic not near genes chr2L_9_2590001 chr2L_2590001 RAL-280 41 chr2L 2637842 2637864 chr2L 2638238 2638259 10 396 2.5 5.5 4.0 2.0 417 chr2L 2637842 intergenic not near genes chr2L 2638050 intergenic not near genes chr2L 2638259 intergenic not near genes chr2L_10_2635001 chr2L_2635001 RAL-280 42 chr2L 2661207 2661235 chr2L 2663034 2663073 I-element 7 1831 1.5 4.0 2.8 1.8 1866 chr2L 2661207 intergenic not near genes chr2L 2662140 intergenic not near genes chr2L 2663073 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-280 43 chr2L 2667624 2667658 chr2L 2667703 2667733 15 77 4.0 3.5 3.8 3.1 109 chr2L 2667624 intergenic not near genes chr2L 2667678 intergenic not near genes chr2L 2667733 intergenic not near genes chr2L_15_2665001 chr2L_2665001 RAL-280 44 chr2L 2826544 2826574 chr2L 2826635 2826644 4 84 0.0 3.5 1.8 1.4 100 chr2L 2826544 intron Duox - chr2L 2826594 intron Duox - chr2L 2826644 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-280 45 chr2L 2927951 2927968 chr2L 2928038 2928055 6 86 1.5 1.5 1.5 2.4 104 chr2L 2927951 intron lilli + chr2L 2928003 intron lilli + chr2L 2928055 intron lilli + chr2L_6_2925001 chr2L_2925001 RAL-280 46 chr2L 3026214 3026241 chr2L 3026870 3026897 12 657 29.0 35.0 32.0 0.4 683 chr2L 3026214 3` UTR CG3542 + chr2L 3026556 3` UTR CG3605 - chr2L 3026897 exon CG3605 - chr2L_12_3025001 chr2L_3025001 RAL-280 47 chr2L 3044923 3044929 chr2L 3045005 3045010 5 88 3.0 3.5 3.2 1.2 87 chr2L 3044923 intron v(2)k05816 + chr2L 3044966 intron v(2)k05816 + chr2L 3045010 intron v(2)k05816 + chr2L_5_3040001 chr2L_3040001 RAL-280 48 chr2L 3073029 3073049 chr2L 3078232 3078252 copia 9 5203 2.5 2.5 2.5 2.6 5223 chr2L 3073029 intron toc - chr2L 3075640 intron toc - chr2L 3078252 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-280 49 chr2L 3087383 3087415 chr2L 3087491 3087522 7 105 1.5 3.0 2.2 2.2 139 chr2L 3087383 intron toc - chr2L 3087452 intron toc - chr2L 3087522 intron toc - chr2L_7_3085001 chr2L_3085001 RAL-280 50 chr2L 3108873 3108895 chr2L 3108950 3108972 7 76 2.0 0.5 1.2 3.2 99 chr2L 3108873 intron toc - chr2L 3108922 intron toc - chr2L 3108972 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-280 51 chr2L 3192211 3192241 chr2L 3192319 3192335 5 102 1.5 4.5 3.0 1.2 124 chr2L 3192211 exon CG34393 - chr2L 3192273 intron CG34393 - chr2L 3192335 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-280 52 chr2L 3291236 3291266 chr2L 3291316 3291346 5 80 3.5 3.0 3.2 1.2 110 chr2L 3291236 intergenic CG9664 - chr2L 3291291 3` UTR CG9664 - chr2L 3291346 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-280 53 chr2L 3299085 3299105 chr2L 3299350 3299355 4 261 3.5 2.5 3.0 1.0 270 chr2L 3299085 intron CG9663 - chr2L 3299220 intron CG9663 - chr2L 3299355 intron CG9663 - chr2L_4_3295001 chr2L_3295001 RAL-280 54 chr2L 3323256 3323284 chr2L 3323363 3323381 10 104 1.5 3.5 2.5 2.9 125 chr2L 3323256 intergenic CG8837 + chr2L 3323318 intergenic CG8837 + chr2L 3323381 intergenic CG8837 + chr2L_10_3320001 chr2L_3320001 RAL-280 55 chr2L 3475891 3475922 chr2L 3475978 3476008 17 86 1.0 0.0 0.5 11.3 117 chr2L 3475891 5` UTR CR45372 + chr2L 3475950 5` UTR CR45372 + chr2L 3476008 5` UTR CR45372 + chr2L_17_3475001 chr2L_3475001 RAL-280 56 chr2L 3496033 3496055 chr2L 3496114 3496136 4 80 0.5 1.0 0.8 2.2 103 chr2L 3496033 intron tim - chr2L 3496084 intron tim - chr2L 3496136 intron tim - chr2L_4_3495001 chr2L_3495001 RAL-280 57 chr2L 3632269 3632277 chr2L 3632346 3632353 4 76 0.0 6.5 3.2 1.0 84 chr2L 3632269 intron for - chr2L 3632311 intron for - chr2L 3632353 intron for - chr2L_4_3630001 chr2L_3630001 RAL-280 58 chr2L 3649788 3649800 chr2L 3654990 3655002 copia 5 5202 0.0 1.0 0.5 3.3 5214 chr2L 3649788 intron for - chr2L 3652395 intron for - chr2L 3655002 intron for - chr2L_5_3650001 chr2L_3650001 RAL-280 59 chr2L 3727154 3727177 chr2L 3727234 3727255 7 80 1.5 0.5 1.0 3.5 101 chr2L 3727154 3` UTR Shaw + chr2L 3727204 3` UTR Shaw + chr2L 3727255 3` UTR Shaw + chr2L_7_3725001 chr2L_3725001 RAL-280 60 chr2L 3785603 3785623 chr2L 3786374 3786378 5 764 10.5 14.5 12.5 0.4 775 chr2L 3785603 3` UTR CG31960 + chr2L 3785990 exon CG31958 + chr2L 3786378 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-280 61 chr2L 3784697 3784726 chr2L 3786381 3786384 7 1666 21.0 16.0 18.5 0.4 1687 chr2L 3784697 intergenic CG31960 + chr2L 3785540 3` UTR CG31960 + chr2L 3786384 intergenic CG31958 + chr2L_7_3785001 chr2L_3785001 RAL-280 62 chr2L 3898303 3898308 chr2L 3898381 3898386 4 78 0.0 8.5 4.2 0.8 83 chr2L 3898303 intron capu - chr2L 3898344 intron capu - chr2L 3898386 intron capu - chr2L_4_3895001 chr2L_3895001 RAL-280 63 chr2L 4066044 4066061 chr2L 4068869 4068886 Juan 4 2825 3.0 4.0 3.5 0.9 2842 chr2L 4066044 intron ed + chr2L 4067465 intron ed + chr2L 4068886 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-280 64 chr2L 4160502 4160527 chr2L 4160912 4160936 9 410 1.5 2.5 2.0 3.0 434 chr2L 4160502 intergenic not near genes chr2L 4160719 intergenic not near genes chr2L 4160936 intergenic not near genes chr2L_9_4160001 chr2L_4160001 RAL-280 65 chr2L 4243700 4243727 chr2L 4243791 4243817 9 90 2.5 4.5 3.5 2.0 117 chr2L 4243700 intergenic not near genes chr2L 4243758 intergenic not near genes chr2L 4243817 intergenic not near genes chr2L_9_4240001 chr2L_4240001 RAL-280 66 chr2L 4374756 4374784 chr2L 4374835 4374862 7 78 1.0 2.5 1.8 2.5 106 chr2L 4374756 intron Traf4 + chr2L 4374809 intron Traf4 + chr2L 4374862 intron Traf4 + chr2L_7_4370001 chr2L_4370001 RAL-280 67 chr2L 4601703 4601735 chr2L 4609144 4609176 mdg1 8 7440 2.0 2.0 2.0 2.7 7473 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_8_4605001 chr2L_4605001 RAL-280 68 chr2L 4611466 4611488 chr2L 4611544 4611551 5 75 2.0 2.5 2.2 1.6 85 chr2L 4611466 intron dp - chr2L 4611508 intron dp - chr2L 4611551 intron dp - chr2L_5_4610001 chr2L_4610001 RAL-280 69 chr2L 4819494 4819518 chr2L 4819617 4819626 5 120 2.5 3.5 3.0 1.2 132 chr2L 4819494 intergenic not near genes chr2L 4819560 intergenic not near genes chr2L 4819626 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-280 70 chr2L 4953521 4953541 chr2L 4953761 4953782 pogo 7 240 3.0 2.0 2.5 2.0 261 chr2L 4953521 intergenic Jon25Bii - chr2L 4953652 intergenic not near genes chr2L 4953782 intergenic Jon25Bi - chr2L_7_4950001 chr2L_4950001 RAL-280 71 chr2L 5120973 5120994 chr2L 5121067 5121088 8 93 1.0 1.5 1.2 3.6 115 chr2L 5120973 intron Msp300 + chr2L 5121030 intron Msp300 + chr2L 5121088 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-280 72 chr2L 5147738 5147752 chr2L 5147955 5147984 6 221 2.0 3.0 2.5 1.7 246 chr2L 5147738 intron Msp300 + chr2L 5147861 intron Msp300 + chr2L 5147984 intron Msp300 + chr2L_6_5145001 chr2L_5145001 RAL-280 73 chr2L 5200542 5200552 chr2L 5215803 5215815 4 15262 24.0 19.5 21.8 0.2 15273 chr2L 5200542 exon Msp300 + chr2L 5208178 exon Cyp28d2 + chr2L 5215815 exon CG14034 - chr2L_4_5205001 chr2L_5205001 RAL-280 74 chr2L 5325628 5325651 chr2L 5325717 5325740 4 88 3.0 5.0 4.0 0.8 112 chr2L 5325628 intron Ncoa6 - chr2L 5325684 intron Ncoa6 - chr2L 5325740 intron Ncoa6 - chr2L_4_5325001 chr2L_5325001 RAL-280 75 chr2L 5342770 5342782 chr2L 5345150 5345162 Doc 5 2379 2.0 1.0 1.5 2.0 2392 chr2L 5342770 intergenic not near genes chr2L 5343966 intergenic not near genes chr2L 5345162 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-280 76 chr2L 5372633 5372657 chr2L 5372738 5372762 6 105 2.5 3.5 3.0 1.5 129 chr2L 5372633 intergenic not near genes chr2L 5372698 intergenic not near genes chr2L 5372762 intergenic not near genes chr2L_6_5370001 chr2L_5370001 RAL-280 77 chr2L 5749901 5749931 chr2L 5749978 5749989 6 67 5.5 6.5 6.0 0.9 88 chr2L 5749901 intron CG11030 + chr2L 5749945 intron CG11030 + chr2L 5749989 intron CG11030 + chr2L_6_5745001 chr2L_5745001 RAL-280 78 chr2L 5819676 5819707 chr2L 5819760 5819791 7 84 1.0 1.5 1.2 3.2 115 chr2L 5819676 intergenic not near genes chr2L 5819734 intergenic not near genes chr2L 5819791 intergenic not near genes chr2L_7_5815001 chr2L_5815001 RAL-280 79 chr2L 5827721 5827741 chr2L 5836729 5836749 roo 6 9008 2.5 5.5 4.0 1.2 9028 chr2L 5827721 intron TrissinR + chr2L 5832235 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-280 80 chr2L 5887608 5887626 chr2L 5887689 5887707 4 81 1.0 2.0 1.5 1.6 99 chr2L 5887608 3` UTR CR44577 - chr2L 5887658 3` UTR CR44577 - chr2L 5887707 3` UTR CR44577 - chr2L_4_5885001 chr2L_5885001 RAL-280 81 chr2L 5942032 5942055 chr2L 5942123 5942146 4 91 1.5 5.0 3.2 1.0 114 chr2L 5942032 5` UTR CR45289 + chr2L 5942089 5` UTR CR45289 + chr2L 5942146 5` UTR CR45289 + chr2L_4_5940001 chr2L_5940001 RAL-280 82 chr2L 5982136 5982165 chr2L 5982215 5982244 7 78 1.0 1.5 1.2 3.2 108 chr2L 5982136 intron eIF-4a + chr2L 5982190 intron eIF-4a + chr2L 5982244 intron eIF-4a + chr2L_7_5980001 chr2L_5980001 RAL-280 83 chr2L 5993328 5993362 chr2L 5993419 5993453 17 91 0.0 2.5 1.2 7.7 125 chr2L 5993328 exon lid - chr2L 5993390 intron lid - chr2L 5993453 intron lid - chr2L_17_5990001 chr2L_5990001 RAL-280 84 chr2L 6001744 6001772 chr2L 6001821 6001849 8 73 4.0 3.0 3.5 1.8 105 chr2L 6001744 3` UTR Tsp26A + chr2L 6001796 3` UTR Tsp26A + chr2L 6001849 3` UTR Tsp26A + chr2L_8_6000001 chr2L_6000001 RAL-280 85 chr2L 6185440 6185468 chr2L 6185518 6185546 5 75 3.5 1.0 2.2 1.6 106 chr2L 6185440 intron CG34380 + chr2L 6185493 intron CG34380 + chr2L 6185546 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-280 86 chr2L 6426856 6426885 chr2L 6445115 6445144 roo 11 18259 2.5 1.0 1.8 3.9 18288 chr2L 6426856 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445144 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-280 87 chr2L 6463560 6463579 chr2L 6463645 6463649 9 86 7.0 1.0 4.0 1.8 89 chr2L 6463560 exon CG16947 - chr2L 6463604 exon CG16947 - chr2L 6463649 exon CG16947 - chr2L_9_6460001 chr2L_6460001 RAL-280 88 chr2L 6496569 6496593 chr2L 6496647 6496674 5 80 1.0 1.5 1.2 2.3 105 chr2L 6496569 3` UTR CG31638 + chr2L 6496622 3` UTR CG31638 + chr2L 6496674 3` UTR CG31638 + chr2L_5_6495001 chr2L_6495001 RAL-280 89 chr2L 6876775 6876809 chr2L 6882965 6882992 diver 7 6189 3.0 2.5 2.8 1.8 6217 chr2L 6876775 intron Nlg2 + chr2L 6879884 intron Nlg2 + chr2L 6882992 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-280 90 chr2L 6883748 6883770 chr2L 6883834 6883855 7 86 3.0 2.5 2.8 1.8 107 chr2L 6883748 intron Nlg2 + chr2L 6883802 intron Nlg2 + chr2L 6883855 intron Nlg2 + chr2L_7_6880001 chr2L_6880001 RAL-280 91 chr2L 7106953 7106976 chr2L 7107112 7107132 6 157 3.0 3.5 3.2 1.4 179 chr2L 7106953 intron Pvf3 - chr2L 7107042 intron Pvf3 - chr2L 7107132 intron Pvf3 - chr2L_6_7105001 chr2L_7105001 RAL-280 92 chr2L 7325920 7325944 chr2L 7326005 7326028 4 84 3.5 1.5 2.5 1.1 108 chr2L 7325920 intergenic not near genes chr2L 7325974 intergenic not near genes chr2L 7326028 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-280 93 chr2L 7343328 7343338 chr2L 7350444 7350454 roo 5 7116 7.0 4.0 5.5 0.8 7126 chr2L 7343328 intron Wnt6 + chr2L 7346891 intron Wnt6 + chr2L 7350454 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-280 94 chr2L 7351060 7351070 chr2L 7351168 7351176 4 107 2.5 3.0 2.8 1.1 116 chr2L 7351060 intron Wnt6 + chr2L 7351118 intron Wnt6 + chr2L 7351176 intron Wnt6 + chr2L_4_7350001 chr2L_7350001 RAL-280 95 chr2L 7502738 7502749 chr2L 7502813 7502821 6 74 5.5 4.5 5.0 1.0 83 chr2L 7502738 intron RapGAP1 - chr2L 7502780 intron RapGAP1 - chr2L 7502821 intron RapGAP1 - chr2L_6_7500001 chr2L_7500001 RAL-280 96 chr2L 7502753 7502765 chr2L 7502812 7502839 6 65 3.0 4.5 3.8 1.2 86 chr2L 7502753 intron RapGAP1 - chr2L 7502796 intron RapGAP1 - chr2L 7502839 intron RapGAP1 - chr2L_6_7500001 chr2L_7500001 RAL-280 97 chr2L 7867568 7867603 chr2L 7867662 7867696 5 94 1.5 1.0 1.2 2.3 128 chr2L 7867568 intron Proc - chr2L 7867632 intron Proc - chr2L 7867696 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-280 98 chr2L 7916860 7916886 chr2L 7916972 7916999 4 113 1.0 1.5 1.2 1.8 139 chr2L 7916860 intron Snoo - chr2L 7916930 intron Snoo - chr2L 7916999 intron Snoo - chr2L_4_7915001 chr2L_7915001 RAL-280 99 chr2L 7922744 7922771 chr2L 7922825 7922852 6 81 2.0 1.5 1.8 2.1 108 chr2L 7922744 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922852 intron Snoo - chr2L_6_7920001 chr2L_7920001 RAL-280 100 chr2L 7959047 7959064 chr2L 7960458 7960475 pogo 5 1411 2.0 0.0 1.0 2.5 1428 chr2L 7959047 intron Snoo - chr2L 7959761 intron Snoo - chr2L 7960475 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-280 101 chr2L 8013616 8013633 chr2L 8018819 8018837 copia 6 5204 1.0 0.0 0.5 4.0 5221 chr2L 8013616 intron Tg + chr2L 8016226 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-280 102 chr2L 8044101 8044126 chr2L 8044176 8044205 8 78 2.0 2.0 2.0 2.7 104 chr2L 8044101 intron CG7466 + chr2L 8044153 intron CG7466 + chr2L 8044205 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-280 103 chr2L 8167151 8167180 chr2L 8167242 8167270 5 90 1.5 3.0 2.2 1.6 119 chr2L 8167151 intron Piezo + chr2L 8167210 intron Piezo + chr2L 8167270 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-280 104 chr2L 8271757 8271763 chr2L 8271858 8271864 4 101 2.5 0.0 1.2 1.8 107 chr2L 8271757 intron Btk29A - chr2L 8271810 intron Btk29A - chr2L 8271864 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-280 105 chr2L 8286300 8286328 chr2L 8286386 8286415 11 85 1.0 4.5 2.8 2.9 115 chr2L 8286300 intron Btk29A - chr2L 8286358 intron Btk29A - chr2L 8286415 intron Btk29A - chr2L_11_8285001 chr2L_8285001 RAL-280 106 chr2L 8349608 8349628 chr2L 8349713 8349733 8 105 3.5 2.0 2.8 2.1 125 chr2L 8349608 exon CG7778 + chr2L 8349670 intron CG7778 + chr2L 8349733 intron CG7778 + chr2L_8_8345001 chr2L_8345001 RAL-280 107 chr2L 8452419 8452451 chr2L 8461589 8461622 roo 4 9171 2.0 1.5 1.8 1.4 9203 chr2L 8452419 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461622 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-280 108 chr2L 8498209 8498232 chr2L 8498289 8498313 5 81 3.0 2.0 2.5 1.4 104 chr2L 8498209 intron Dh31 - chr2L 8498261 intron Dh31 - chr2L 8498313 intron Dh31 - chr2L_5_8495001 chr2L_8495001 RAL-280 109 chr2L 8612854 8612870 chr2L 8612931 8612946 6 76 1.5 3.5 2.5 1.7 92 chr2L 8612854 intron Sema-1a + chr2L 8612900 intron Sema-1a + chr2L 8612946 intron Sema-1a + chr2L_6_8610001 chr2L_8610001 RAL-280 110 chr2L 8666543 8666556 chr2L 8666626 8666634 5 79 5.5 1.5 3.5 1.1 91 chr2L 8666543 3` UTR Sema-1a + chr2L 8666588 3` UTR Sema-1a + chr2L 8666634 3` UTR Sema-1a + chr2L_5_8665001 chr2L_8665001 RAL-280 111 chr2L 8689709 8689728 chr2L 8689805 8689825 7 97 2.5 5.5 4.0 1.4 116 chr2L 8689709 intron Hnf4 - chr2L 8689767 intron Hnf4 - chr2L 8689825 exon Hnf4 - chr2L_7_8685001 chr2L_8685001 RAL-280 112 chr2L 8723116 8723148 chr2L 8731491 8731525 Tirant 9 8377 0.5 2.5 1.5 3.6 8409 chr2L 8723116 intron raw - chr2L 8727320 intron raw - chr2L 8731525 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-280 113 chr2L 8760971 8760998 chr2L 8761044 8761045 4 62 2.0 0.0 1.0 2.0 74 chr2L 8760971 intergenic not near genes chr2L 8761008 intergenic not near genes chr2L 8761045 intergenic not near genes chr2L_4_8760001 chr2L_8760001 RAL-280 114 chr2L 8902454 8902472 chr2L 8902598 8902599 6 143 0.5 1.0 0.8 3.3 145 chr2L 8902454 intron CG34398 + chr2L 8902526 intron CG34398 + chr2L 8902599 intron CG34398 + chr2L_6_8900001 chr2L_8900001 RAL-280 115 chr2L 8910725 8910734 chr2L 8910816 8910825 5 91 3.0 2.5 2.8 1.3 100 chr2L 8910725 intron CG34398 + chr2L 8910775 intron CG34398 + chr2L 8910825 intron CG34398 + chr2L_5_8910001 chr2L_8910001 RAL-280 116 chr2L 9000282 9000302 chr2L 9007792 9007812 roo 7 7508 5.0 3.5 4.2 1.3 7530 chr2L 9000282 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007812 intergenic not near genes chr2L_7_9000001 chr2L_9000001 RAL-280 117 chr2L 9014331 9014353 chr2L 9054988 9055009 5 40656 6.5 22.0 14.2 0.3 40678 chr2L 9014331 intergenic CG13102 +,Rcd-1r - chr2L 9034670 intergenic not near genes chr2L 9055009 intron CG31708 - chr2L_5_9030001 chr2L_9030001 RAL-280 118 chr2L 9084338 9084340 chr2L 16217660 16217660 6 7133321 9.5 16.5 13.0 0.4 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-280 119 chr2L 9227434 9227451 chr2L 9227510 9227527 5 76 1.0 1.0 1.0 2.5 93 chr2L 9227434 intron tai + chr2L 9227480 intron tai + chr2L 9227527 intron tai + chr2L_5_9225001 chr2L_9225001 RAL-280 120 chr2L 9235230 9235255 chr2L 9235336 9235361 13 105 2.5 1.0 1.8 4.6 131 chr2L 9235230 exon tai + chr2L 9235296 intron tai + chr2L 9235361 intron tai + chr2L_13_9235001 chr2L_9235001 RAL-280 121 chr2L 9264345 9264350 chr2L 9264445 9264450 4 100 3.5 1.0 2.2 1.2 105 chr2L 9264345 intron Ggamma30A + chr2L 9264398 intron Ggamma30A + chr2L 9264450 intron Ggamma30A + chr2L_4_9260001 chr2L_9260001 RAL-280 122 chr2L 9297379 9297390 chr2L 9297456 9297467 4 77 2.5 1.5 2.0 1.3 88 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297423 3` UTR Ggamma30A + chr2L 9297467 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-280 123 chr2L 9359945 9359968 chr2L 9360085 9360103 6 141 1.5 4.0 2.8 1.6 158 chr2L 9359945 intergenic not near genes chr2L 9360024 intergenic not near genes chr2L 9360103 intergenic not near genes chr2L_6_9360001 chr2L_9360001 RAL-280 124 chr2L 9506435 9506455 chr2L 9506585 9506604 4 150 1.5 0.5 1.0 2.0 169 chr2L 9506435 intron CG33298 + chr2L 9506520 intron CG33298 + chr2L 9506604 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-280 125 chr2L 9691648 9691662 chr2L 9691722 9691738 5 75 2.5 1.5 2.0 1.7 90 chr2L 9691648 intron Pka-C1 - chr2L 9691693 intron Pka-C1 - chr2L 9691738 intron Pka-C1 - chr2L_5_9690001 chr2L_9690001 RAL-280 126 chr2L 9920526 9920553 chr2L 9920630 9920661 13 106 3.0 2.0 2.5 3.7 135 chr2L 9920526 exon CG4594 + chr2L 9920594 exon CG4594 + chr2L 9920661 exon CG4594 + chr2L_13_9920001 chr2L_9920001 RAL-280 127 chr2L 9973729 9973758 chr2L 9980848 9980861 HMS-Beagle 15 7116 5.0 2.5 3.8 3.1 7132 chr2L 9973729 intergenic not near genes chr2L 9977295 intergenic not near genes chr2L 9980861 intergenic not near genes chr2L_15_9975001 chr2L_9975001 RAL-280 128 chr2L 9986354 9986383 chr2L 9986445 9986475 7 88 3.0 1.0 2.0 2.3 121 chr2L 9986354 intron bib + chr2L 9986414 intron bib + chr2L 9986475 intron bib + chr2L_7_9985001 chr2L_9985001 RAL-280 129 chr2L 10051732 10051736 chr2L 10051815 10051820 4 84 9.5 5.0 7.2 0.5 88 chr2L 10051732 5` UTR CR44874 + chr2L 10051776 5` UTR CR44874 + chr2L 10051820 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-280 130 chr2L 10051740 10051753 chr2L 10051811 10051838 8 80 4.5 3.5 4.0 1.6 98 chr2L 10051740 5` UTR CR44874 + chr2L 10051789 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_8_10050001 chr2L_10050001 RAL-280 131 chr2L 10156335 10156350 chr2L 10163805 10163820 blood 5 7469 2.5 0.5 1.5 2.0 7485 chr2L 10156335 intron,3` UTR CG44153 -,CG4839 + chr2L 10160078 intron CG44153 - chr2L 10163820 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-280 132 chr2L 10184594 10184625 chr2L 10184716 10184718 10 112 7.0 4.0 5.5 1.5 124 chr2L 10184594 exon Sur - chr2L 10184656 exon Sur - chr2L 10184718 exon Sur - chr2L_10_10180001 chr2L_10180001 RAL-280 133 chr2L 10791864 10791889 chr2L 10791943 10791955 8 77 2.5 4.5 3.5 1.8 91 chr2L 10791864 intron CG31869 - chr2L 10791910 intron CG31869 - chr2L 10791955 intron CG31869 - chr2L_8_10790001 chr2L_10790001 RAL-280 134 chr2L 10862844 10862875 chr2L 10864458 10864489 Rt1c 13 1612 4.0 5.5 4.8 2.2 1645 chr2L 10862844 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_13_10860001 chr2L_10860001 RAL-280 135 chr2L 10919798 10919828 chr2L 10919887 10919915 5 88 2.5 2.5 2.5 1.4 117 chr2L 10919798 intron dpr2 - chr2L 10919856 intron dpr2 - chr2L 10919915 intron dpr2 - chr2L_5_10915001 chr2L_10915001 RAL-280 136 chr2L 10946947 10946977 chr2L 10956162 10956182 roo 12 9212 5.0 3.5 4.2 2.3 9235 chr2L 10946947 intron dpr2 - chr2L 10951564 intron dpr2 - chr2L 10956182 intron dpr2 - chr2L_12_10950001 chr2L_10950001 RAL-280 137 chr2L 11390721 11390753 chr2L 11390822 11390856 7 100 1.0 2.0 1.5 2.8 135 chr2L 11390721 3` UTR CR43681 - chr2L 11390788 3` UTR CR43681 - chr2L 11390856 3` UTR CR43681 - chr2L_7_11390001 chr2L_11390001 RAL-280 138 chr2L 11455562 11455592 chr2L 11455646 11455676 9 83 2.5 6.0 4.2 1.7 114 chr2L 11455562 intergenic not near genes chr2L 11455619 intergenic not near genes chr2L 11455676 intergenic not near genes chr2L_9_11455001 chr2L_11455001 RAL-280 139 chr2L 11563639 11563667 chr2L 11568841 11568870 copia 6 5203 2.5 5.5 4.0 1.2 5231 chr2L 11563639 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_6_11565001 chr2L_11565001 RAL-280 140 chr2L 11612665 11612695 chr2L 11612752 11612783 7 88 3.0 3.5 3.2 1.7 118 chr2L 11612665 intron kek2 + chr2L 11612724 intron kek2 + chr2L 11612783 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-280 141 chr2L 11657971 11658001 chr2L 11658056 11658086 9 85 1.0 1.5 1.2 4.1 115 chr2L 11657971 3` UTR CG43167 + chr2L 11658028 intergenic CG43167 + chr2L 11658086 intergenic CG43167 + chr2L_9_11655001 chr2L_11655001 RAL-280 142 chr2L 11713511 11713538 chr2L 11720974 11721006 blood 12 7468 4.0 2.5 3.2 2.9 7495 chr2L 11713511 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721006 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-280 143 chr2L 11750326 11750340 chr2L 11750611 11750626 5 286 1.0 2.0 1.5 2.0 300 chr2L 11750326 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750626 intergenic not near genes chr2L_5_11750001 chr2L_11750001 RAL-280 144 chr2L 11865517 11865542 chr2L 11865629 11865654 6 111 7.0 3.5 5.2 1.0 137 chr2L 11865517 intron Pde1c - chr2L 11865586 intron Pde1c - chr2L 11865654 intron Pde1c - chr2L_6_11865001 chr2L_11865001 RAL-280 145 chr2L 12229586 12229609 chr2L 12229663 12229686 6 77 1.5 0.5 1.0 3.0 100 chr2L 12229586 intron aret + chr2L 12229636 intron aret + chr2L 12229686 intron aret + chr2L_6_12225001 chr2L_12225001 RAL-280 146 chr2L 12462873 12462899 chr2L 12462949 12462975 5 76 0.5 1.0 0.8 2.8 102 chr2L 12462873 intron bun - chr2L 12462924 intron bun - chr2L 12462975 intron bun - chr2L_5_12460001 chr2L_12460001 RAL-280 147 chr2L 12518533 12518567 chr2L 12518791 12518826 6 258 3.0 1.0 2.0 2.0 293 chr2L 12518533 intron bun - chr2L 12518680 intron bun - chr2L 12518826 intron bun - chr2L_6_12515001 chr2L_12515001 RAL-280 148 chr2L 12529233 12529264 chr2L 12529385 12529416 5 152 1.5 1.5 1.5 2.0 183 chr2L 12529233 intron bun - chr2L 12529324 intron bun - chr2L 12529416 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-280 149 chr2L 12653789 12653804 chr2L 12653906 12653921 4 117 0.5 3.5 2.0 1.3 132 chr2L 12653789 intergenic not near genes chr2L 12653855 intergenic not near genes chr2L 12653921 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-280 150 chr2L 12731054 12731086 chr2L 12735821 12735853 F-element 4 4767 2.5 0.0 1.2 1.8 4799 chr2L 12731054 intron MRP + chr2L 12733454 intron MRP + chr2L 12735853 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-280 151 chr2L 12736671 12736695 chr2L 12736745 12736769 4 74 1.5 2.5 2.0 1.3 98 chr2L 12736671 intron MRP + chr2L 12736720 intron MRP + chr2L 12736769 intron MRP + chr2L_4_12735001 chr2L_12735001 RAL-280 152 chr2L 12739172 12739198 chr2L 12743953 12743979 Doc 10 4780 3.5 4.0 3.8 2.1 4807 chr2L 12739172 exon MRP + chr2L 12741576 intron MRP + chr2L 12743979 exon MRP + chr2L_10_12740001 chr2L_12740001 RAL-280 153 chr2L 12751311 12751339 chr2L 12751394 12751422 8 82 0.5 1.5 1.0 4.0 111 chr2L 12751311 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751422 intergenic not near genes chr2L_8_12750001 chr2L_12750001 RAL-280 154 chr2L 12861694 12861730 chr2L 12863161 12863179 hobo 9 1463 1.5 3.0 2.2 2.8 1485 chr2L 12861694 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-280 155 chr2L 12894033 12894051 chr2L 12895488 12895490 hobo 5 1448 6.5 6.5 6.5 0.7 1457 chr2L 12894033 intergenic not near genes chr2L 12894762 intergenic not near genes chr2L 12895490 intergenic not near genes chr2L_5_12890001 chr2L_12890001 RAL-280 156 chr2L 12905478 12905483 chr2L 12905562 12905567 4 84 0.5 1.0 0.8 2.2 89 chr2L 12905478 intergenic not near genes chr2L 12905522 intergenic not near genes chr2L 12905567 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-280 157 chr2L 12933849 12933876 chr2L 12941316 12941343 blood 6 7467 7.0 2.0 4.5 1.1 7494 chr2L 12933849 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941343 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-280 158 chr2L 13077581 13077590 chr2L 13078175 13078184 5 594 7.0 0.5 3.8 1.0 603 chr2L 13077581 intergenic not near genes chr2L 13077882 intergenic not near genes chr2L 13078184 intergenic not near genes chr2L_5_13075001 chr2L_13075001 RAL-280 159 chr2L 13341770 13341797 chr2L 13342383 13342410 4 613 0.0 0.5 0.2 3.3 640 chr2L 13341770 intergenic not near genes chr2L 13342090 intergenic not near genes chr2L 13342410 intergenic not near genes chr2L_4_13340001 chr2L_13340001 RAL-280 160 chr2L 13405648 13405679 chr2L 13410445 13410476 Doc 11 4796 1.0 1.0 1.0 5.5 4828 chr2L 13405648 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-280 161 chr2L 13424215 13424236 chr2L 13424336 13424360 10 123 2.0 2.5 2.2 3.1 145 chr2L 13424215 intron CG42784 + chr2L 13424288 intron CG42784 + chr2L 13424360 intron CG42784 + chr2L_10_13420001 chr2L_13420001 RAL-280 162 chr2L 13447468 13447503 chr2L 13447580 13447615 9 112 1.5 1.5 1.5 3.6 147 chr2L 13447468 intron CG42784 + chr2L 13447542 intron,3` UTR CG42784 +,Hsp60D - chr2L 13447615 intron,3` UTR CG42784 +,Hsp60D - chr2L_9_13445001 chr2L_13445001 RAL-280 163 chr2L 13620113 13620141 chr2L 13620339 13620367 5 226 1.5 2.5 2.0 1.7 254 chr2L 13620113 intron kuz + chr2L 13620240 intron kuz + chr2L 13620367 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-280 164 chr2L 13622170 13622170 chr2L 13622235 13622269 5 90 1.5 0.5 1.0 2.5 99 chr2L 13622170 intron kuz + chr2L 13622220 intron kuz + chr2L 13622269 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-280 165 chr2L 13740085 13740093 chr2L 13740165 13740173 4 80 0.0 4.5 2.2 1.2 88 chr2L 13740085 intergenic not near genes chr2L 13740129 intergenic not near genes chr2L 13740173 intergenic not near genes chr2L_4_13740001 chr2L_13740001 RAL-280 166 chr2L 13853085 13853107 chr2L 13862235 13862257 roo 9 9150 3.5 1.0 2.2 2.8 9172 chr2L 13853085 intron CenG1A + chr2L 13857671 intron CenG1A + chr2L 13862257 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-280 167 chr2L 14064454 14064488 chr2L 14064531 14064559 19 74 4.5 3.5 4.0 3.8 105 chr2L 14064454 intron nAChRalpha5 + chr2L 14064506 intron nAChRalpha5 + chr2L 14064559 intron nAChRalpha5 + chr2L_19_14060001 chr2L_14060001 RAL-280 168 chr2L 14068612 14068629 chr2L 14068688 14068709 6 76 2.0 0.5 1.2 2.7 97 chr2L 14068612 intron nAChRalpha5 + chr2L 14068660 intron nAChRalpha5 + chr2L 14068709 intron nAChRalpha5 + chr2L_6_14065001 chr2L_14065001 RAL-280 169 chr2L 14268601 14268613 chr2L 14268678 14268690 5 77 0.5 5.0 2.8 1.3 89 chr2L 14268601 intron wb + chr2L 14268646 intron wb + chr2L 14268690 intron wb + chr2L_5_14265001 chr2L_14265001 RAL-280 170 chr2L 14374780 14374792 chr2L 14374871 14374883 4 91 0.5 1.0 0.8 2.2 103 chr2L 14374780 intergenic not near genes chr2L 14374832 intergenic not near genes chr2L 14374883 intergenic not near genes chr2L_4_14370001 chr2L_14370001 RAL-280 171 chr2L 14557246 14557277 chr2L 14557342 14557373 14 94 2.5 3.0 2.8 3.7 127 chr2L 14557246 intergenic not near genes chr2L 14557310 intergenic not near genes chr2L 14557373 intergenic not near genes chr2L_14_14555001 chr2L_14555001 RAL-280 172 chr2L 14601978 14602001 chr2L 14602062 14602085 9 84 3.5 3.0 3.2 2.1 107 chr2L 14601978 exon osp - chr2L 14602032 intron osp - chr2L 14602085 intron osp - chr2L_9_14600001 chr2L_14600001 RAL-280 173 chr2L 14642580 14642602 chr2L 14651743 14651765 roo 5 9163 2.0 2.5 2.2 1.6 9185 chr2L 14642580 intron osp - chr2L 14647172 intron osp - chr2L 14651765 intron osp - chr2L_5_14645001 chr2L_14645001 RAL-280 174 chr2L 14694258 14694285 chr2L 14694382 14694408 4 124 0.0 2.0 1.0 2.0 150 chr2L 14694258 intergenic not near genes chr2L 14694333 intergenic not near genes chr2L 14694408 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-280 175 chr2L 14794297 14794318 chr2L 14794511 14794532 4 214 0.0 3.5 1.8 1.4 235 chr2L 14794297 intergenic CG18420 - chr2L 14794414 intergenic CG18420 - chr2L 14794532 3` UTR CG18420 - chr2L_4_14790001 chr2L_14790001 RAL-280 176 chr2L 14803896 14803912 chr2L 14809099 14809115 copia 6 5203 0.5 2.5 1.5 2.4 5219 chr2L 14803896 intergenic not near genes chr2L 14806506 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-280 177 chr2L 14889952 14889988 chr2L 14890377 14890413 jockey 9 425 3.5 1.5 2.5 2.6 461 chr2L 14889952 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_9_14890001 chr2L_14890001 RAL-280 178 chr2L 14939653 14939680 chr2L 14939780 14939806 5 127 0.5 3.0 1.8 1.8 153 chr2L 14939653 intron CG42313 - chr2L 14939730 intron CG42313 - chr2L 14939806 intron CG42313 - chr2L_5_14935001 chr2L_14935001 RAL-280 179 chr2L 13778373 13778382 chr2L 15180321 15180324 4 1401945 17.5 13.0 15.2 0.2 1401951 chr2L 13778373 intron CG9008 - chr2L 14479348 intergenic not near genes chr2L 15180324 intron CG4168 - chr2L_4_14475001 chr2L_14475001 RAL-280 180 chr2L 15313744 15313772 chr2L 15313865 15313893 10 120 4.0 5.0 4.5 1.8 149 chr2L 15313744 intergenic not near genes chr2L 15313818 intergenic not near genes chr2L 15313893 intergenic not near genes chr2L_10_15310001 chr2L_15310001 RAL-280 181 chr2L 15427283 15427314 chr2L 15427469 15427500 7 186 2.5 0.0 1.2 3.2 217 chr2L 15427283 intergenic not near genes chr2L 15427392 intergenic not near genes chr2L 15427500 intergenic not near genes chr2L_7_15425001 chr2L_15425001 RAL-280 182 chr2L 15535886 15535909 chr2L 15535976 15535998 11 90 3.0 2.5 2.8 2.9 112 chr2L 15535886 intergenic not near genes chr2L 15535942 intergenic not near genes chr2L 15535998 intergenic not near genes chr2L_11_15535001 chr2L_15535001 RAL-280 183 chr2L 15956025 15956054 chr2L 15957488 15957521 hobo 4 1466 3.0 2.5 2.8 1.1 1496 chr2L 15956025 intron beat-Ib - chr2L 15956773 intron beat-Ib - chr2L 15957521 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-280 184 chr2L 16069275 16069295 chr2L 16069344 16069370 7 77 3.0 2.5 2.8 1.8 95 chr2L 16069275 intron beat-Ia + chr2L 16069322 intron beat-Ia + chr2L 16069370 intron beat-Ia + chr2L_7_16065001 chr2L_16065001 RAL-280 185 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 18.0 16.5 17.2 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-280 186 chr2L 16098934 16098948 chr2L 16099022 16099036 4 88 1.0 1.0 1.0 2.0 102 chr2L 16098934 intergenic not near genes chr2L 16098985 intergenic not near genes chr2L 16099036 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-280 187 chr2L 16141165 16141177 chr2L 16146368 16146384 copia 4 5206 2.0 2.5 2.2 1.2 5219 chr2L 16141165 intergenic not near genes chr2L 16143774 intergenic not near genes chr2L 16146384 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-280 188 chr2L 9084337 9084340 chr2L 16217660 16217660 9 7133321 9.5 16.5 13.0 0.6 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-280 189 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 18.0 16.5 17.2 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-280 190 chr2L 16280254 16280285 chr2L 16281425 16281455 1360 5 1170 3.0 6.0 4.5 0.9 1201 chr2L 16280254 intron crp - chr2L 16280854 intron crp - chr2L 16281455 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-280 191 chr2L 16394910 16394945 chr2L 16394996 16395007 8 82 0.5 0.5 0.5 5.3 97 chr2L 16394910 intergenic not near genes chr2L 16394958 intergenic not near genes chr2L 16395007 intergenic not near genes chr2L_8_16390001 chr2L_16390001 RAL-280 192 chr2L 16488728 16488756 chr2L 16488848 16488876 4 119 2.0 3.5 2.8 1.1 148 chr2L 16488728 exon CG4580 + chr2L 16488802 exon CG4580 + chr2L 16488876 exon CG4580 + chr2L_4_16485001 chr2L_16485001 RAL-280 193 chr2L 16572207 16572240 chr2L 16572300 16572332 7 89 0.0 0.5 0.2 5.8 125 chr2L 16572207 intron CG42389 + chr2L 16572270 intron CG42389 + chr2L 16572332 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-280 194 chr2L 17053297 17053306 chr2L 17053707 17053716 4 410 0.5 3.5 2.0 1.3 419 chr2L 17053297 intergenic not near genes chr2L 17053506 intergenic not near genes chr2L 17053716 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-280 195 chr2L 17098032 17098065 chr2L 17098108 17098141 8 76 0.5 0.5 0.5 5.3 109 chr2L 17098032 intergenic not near genes chr2L 17098086 intergenic not near genes chr2L 17098141 intergenic not near genes chr2L_8_17095001 chr2L_17095001 RAL-280 196 chr2L 17164545 17164570 chr2L 17165708 17165733 5 1163 3.0 2.5 2.8 1.3 1188 chr2L 17164545 intron,intron CG34106 +,beat-IIIa + chr2L 17165139 intron,intron CG34106 +,beat-IIIa + chr2L 17165733 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-280 197 chr2L 17167564 17167589 chr2L 17167805 17167830 pogo 4 241 2.0 1.0 1.5 1.6 266 chr2L 17167564 intron,intron CG34106 +,beat-IIIa + chr2L 17167697 intron,intron CG34106 +,beat-IIIa + chr2L 17167830 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-280 198 chr2L 17170452 17170474 chr2L 17170543 17170565 5 90 1.0 0.0 0.5 3.3 113 chr2L 17170452 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170508 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170565 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L_5_17170001 chr2L_17170001 RAL-280 199 chr2L 17238831 17238858 chr2L 17238916 17238943 4 84 2.5 0.5 1.5 1.6 112 chr2L 17238831 intron beat-IIIc - chr2L 17238887 intron beat-IIIc - chr2L 17238943 intron beat-IIIc - chr2L_4_17235001 chr2L_17235001 RAL-280 200 chr2L 17273195 17273227 chr2L 17277972 17278009 F-element 13 4779 3.0 3.0 3.0 3.2 4814 chr2L 17273195 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278009 intergenic not near genes chr2L_13_17275001 chr2L_17275001 RAL-280 201 chr2L 17911964 17911987 chr2L 17914142 17914165 pogo 4 2178 2.5 1.5 2.0 1.3 2201 chr2L 17911964 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-280 202 chr2L 17951948 17951972 chr2L 17953415 17953439 hobo 4 1467 2.5 1.0 1.8 1.4 1491 chr2L 17951948 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953439 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-280 203 chr2L 17987862 17987893 chr2L 17991961 17991992 4 4099 11.0 18.0 14.5 0.3 4130 chr2L 17987862 exon CG5681 + chr2L 17989927 intergenic Prosbeta5R2 + chr2L 17991992 intergenic Prosbeta5R2 + chr2L_4_17985001 chr2L_17985001 RAL-280 204 chr2L 18020740 18020764 chr2L 18020827 18020851 5 87 0.0 0.0 0.0 5.0 111 chr2L 18020740 intron rdo + chr2L 18020796 intron rdo + chr2L 18020851 intron rdo + chr2L_5_18020001 chr2L_18020001 RAL-280 205 chr2L 18032459 18032469 chr2L 18032745 18032755 5 285 3.5 2.5 3.0 1.2 296 chr2L 18032459 intron rdo + chr2L 18032607 intron rdo + chr2L 18032755 intron rdo + chr2L_5_18030001 chr2L_18030001 RAL-280 206 chr2L 18032471 18032486 chr2L 18032739 18032769 7 281 1.5 2.0 1.8 2.5 298 chr2L 18032471 intron rdo + chr2L 18032620 intron rdo + chr2L 18032769 intron rdo + chr2L_7_18030001 chr2L_18030001 RAL-280 207 chr2L 18051876 18051909 chr2L 18061023 18061056 roo 11 9147 1.5 3.5 2.5 3.1 9180 chr2L 18051876 intron rdo + chr2L 18056466 intron rdo + chr2L 18061056 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-280 208 chr2L 18274041 18274059 chr2L 18274127 18274138 6 84 4.0 1.5 2.8 1.6 97 chr2L 18274041 intron CG42750 - chr2L 18274090 intron CG42750 - chr2L 18274138 intron CG42750 - chr2L_6_18270001 chr2L_18270001 RAL-280 209 chr2L 18303984 18303997 chr2L 18304075 18304088 4 91 2.0 2.0 2.0 1.3 104 chr2L 18303984 intergenic not near genes chr2L 18304036 intergenic not near genes chr2L 18304088 intergenic not near genes chr2L_4_18300001 chr2L_18300001 RAL-280 210 chr2L 18408028 18408048 chr2L 18412812 18412832 Doc 4 4784 2.0 0.5 1.2 1.8 4804 chr2L 18408028 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412832 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-280 211 chr2L 18480426 18480458 chr2L 18480506 18480538 6 79 2.0 1.5 1.8 2.1 112 chr2L 18480426 intron CG10283 - chr2L 18480482 intron CG10283 - chr2L 18480538 intron CG10283 - chr2L_6_18480001 chr2L_18480001 RAL-280 212 chr2L 18565590 18565598 chr2L 18566008 18566032 4 426 2.5 2.5 2.5 1.1 442 chr2L 18565590 intron Pde11 - chr2L 18565811 intron Pde11 - chr2L 18566032 intron Pde11 - chr2L_4_18565001 chr2L_18565001 RAL-280 213 chr2L 18571231 18571264 chr2L 18579315 18579348 7 8084 5.0 16.0 10.5 0.6 8117 chr2L 18571231 intron Pde11 - chr2L 18575290 intron Pde11 - chr2L 18579348 intron Pde11 - chr2L_7_18575001 chr2L_18575001 RAL-280 214 chr2L 18580819 18580839 chr2L 18580899 18580918 12 79 4.0 4.0 4.0 2.4 99 chr2L 18580819 intron Pde11 - chr2L 18580868 intron Pde11 - chr2L 18580918 intron Pde11 - chr2L_12_18580001 chr2L_18580001 RAL-280 215 chr2L 18812561 18812590 chr2L 18812824 18812853 4 263 1.5 3.0 2.2 1.2 292 chr2L 18812561 intergenic CG17325 +,CG42305 + chr2L 18812707 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-280 216 chr2L 18845290 18845297 chr2L 18845372 18845374 4 80 3.0 4.5 3.8 0.8 84 chr2L 18845290 5` UTR CG17321 + chr2L 18845332 5` UTR CG17321 + chr2L 18845374 5` UTR CG17321 + chr2L_4_18845001 chr2L_18845001 RAL-280 217 chr2L 18902629 18902655 chr2L 18902907 18902936 4 274 0.5 0.0 0.2 3.3 307 chr2L 18902629 intergenic not near genes chr2L 18902782 intergenic not near genes chr2L 18902936 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-280 218 chr2L 18955691 18955708 chr2L 18955778 18955795 4 87 6.5 3.0 4.8 0.7 104 chr2L 18955691 3` UTR CG10623 - chr2L 18955743 3` UTR CG10623 - chr2L 18955795 3` UTR CG10623 - chr2L_4_18955001 chr2L_18955001 RAL-280 219 chr2L 18981394 18981419 chr2L 18981477 18981502 12 82 4.0 3.0 3.5 2.7 108 chr2L 18981394 intron Swip-1 - chr2L 18981448 intron Swip-1 - chr2L 18981502 intron Swip-1 - chr2L_12_18980001 chr2L_18980001 RAL-280 220 chr2L 19070274 19070297 chr2L 19070367 19070390 5 92 0.5 3.5 2.0 1.7 116 chr2L 19070274 intergenic CG10702 - chr2L 19070332 intergenic CG10702 - chr2L 19070390 intergenic not near genes chr2L_5_19070001 chr2L_19070001 RAL-280 221 chr2L 19077904 19077930 chr2L 19077986 19078012 17 81 3.0 1.5 2.2 5.3 108 chr2L 19077904 exon CG10700 - chr2L 19077958 exon CG10700 - chr2L 19078012 exon CG10700 - chr2L_17_19075001 chr2L_19075001 RAL-280 222 chr2L 19144960 19145194 chr2L 19145038 19145280 4 84 2.5 7.5 5.0 0.7 320 chr2L 19144960 intron brat + chr2L 19145120 intron brat + chr2L 19145280 intron brat + chr2L_4_19145001 chr2L_19145001 RAL-280 223 chr2L 19147368 19147384 chr2L 19154403 19154419 297 4 7034 2.5 2.0 2.2 1.2 7051 chr2L 19147368 intron brat + chr2L 19150894 intron brat + chr2L 19154419 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-280 224 chr2L 19156896 19156916 chr2L 19156985 19157005 4 89 2.0 4.0 3.0 1.0 109 chr2L 19156896 intron brat + chr2L 19156950 intron brat + chr2L 19157005 intron brat + chr2L_4_19155001 chr2L_19155001 RAL-280 225 chr2L 19345025 19345050 chr2L 19357220 19357256 blood 7 12206 2.0 2.0 2.0 2.3 12231 chr2L 19345025 intron dnt - chr2L 19351140 intron dnt - chr2L 19357256 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-280 226 chr2L 19441072 19441088 chr2L 19441149 19441165 4 76 4.5 5.0 4.8 0.7 93 chr2L 19441072 intron CG10237 - chr2L 19441118 intron CG10237 - chr2L 19441165 5` UTR CG10237 - chr2L_4_19440001 chr2L_19440001 RAL-280 227 chr2L 19559410 19559413 chr2L 19559475 19559489 5 74 0.5 0.0 0.2 4.2 79 chr2L 19559410 exon Tep5 + chr2L 19559450 exon Tep5 + chr2L 19559489 exon Tep5 + chr2L_5_19555001 chr2L_19555001 RAL-280 228 chr2L 19560004 19560032 chr2L 19560256 19560284 7 252 2.0 1.5 1.8 2.5 280 chr2L 19560004 exon Tep5 + chr2L 19560144 exon Tep5 + chr2L 19560284 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-280 229 chr2L 19560835 19560865 chr2L 19560915 19560945 7 80 1.5 0.0 0.8 3.9 110 chr2L 19560835 intron Tep5 + chr2L 19560890 exon Tep5 + chr2L 19560945 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-280 230 chr2L 19561344 19561362 chr2L 19561485 19561503 5 140 3.0 3.0 3.0 1.2 159 chr2L 19561344 exon Tep5 + chr2L 19561424 exon Tep5 + chr2L 19561503 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-280 231 chr2L 19562543 19562560 chr2L 19562623 19562640 7 79 0.0 5.5 2.8 1.8 97 chr2L 19562543 intron Tep5 + chr2L 19562592 intron Tep5 + chr2L 19562640 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-280 232 chr2L 19620098 19620107 chr2L 19621087 19621096 jockey 4 989 6.5 3.0 4.8 0.7 998 chr2L 19620098 intron Lar + chr2L 19620597 intron Lar + chr2L 19621096 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-280 233 chr2L 19620110 19620124 chr2L 19621078 19621087 jockey 7 980 4.5 2.5 3.5 1.6 977 chr2L 19620110 intron Lar + chr2L 19620598 intron Lar + chr2L 19621087 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-280 234 chr2L 19703536 19703568 chr2L 19712672 19712702 roo 9 9134 2.5 2.5 2.5 2.6 9166 chr2L 19703536 intron Lar + chr2L 19708119 intron Lar + chr2L 19712702 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-280 235 chr2L 19737360 19737389 chr2L 19740828 19740849 1360 9 3467 2.5 5.0 3.8 1.9 3489 chr2L 19737360 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740849 intergenic not near genes chr2L_9_19735001 chr2L_19735001 RAL-280 236 chr2L 19762815 19762839 chr2L 19763057 19763080 pogo 6 242 1.5 1.0 1.2 2.7 265 chr2L 19762815 intron fbp - chr2L 19762948 intron fbp - chr2L 19763080 intron fbp - chr2L_6_19760001 chr2L_19760001 RAL-280 237 chr2L 19817542 19817550 chr2L 19817659 19817667 4 117 4.0 0.5 2.2 1.2 125 chr2L 19817542 intron sick + chr2L 19817604 intron sick + chr2L 19817667 intron sick + chr2L_4_19815001 chr2L_19815001 RAL-280 238 chr2L 19837279 19837302 chr2L 19837359 19837382 11 79 3.5 4.5 4.0 2.2 103 chr2L 19837279 intron sick + chr2L 19837330 intron sick + chr2L 19837382 intron sick + chr2L_11_19835001 chr2L_19835001 RAL-280 239 chr2L 19878989 19879018 chr2L 19879198 19879227 11 209 0.5 2.0 1.2 5.0 238 chr2L 19878989 intron sick + chr2L 19879108 intron sick + chr2L 19879227 intron sick + chr2L_11_19875001 chr2L_19875001 RAL-280 240 chr2L 19972939 19972964 chr2L 19973021 19973052 5 87 5.5 2.5 4.0 1.0 113 chr2L 19972939 intron CG43861 - chr2L 19972996 intron CG43861 - chr2L 19973052 intron CG43861 - chr2L_5_19970001 chr2L_19970001 RAL-280 241 chr2L 19994652 19994657 chr2L 19994822 19994853 4 185 0.0 3.5 1.8 1.4 201 chr2L 19994652 intron CG43861 - chr2L 19994752 intron CG43861 - chr2L 19994853 intron CG43861 - chr2L_4_19990001 chr2L_19990001 RAL-280 242 chr2L 20014137 20014156 chr2L 20014299 20014318 4 162 2.0 3.0 2.5 1.1 181 chr2L 20014137 intron CG43861 - chr2L 20014228 intron CG43861 - chr2L 20014318 intron CG43861 - chr2L_4_20010001 chr2L_20010001 RAL-280 243 chr2L 20322638 20322668 chr2L 20322721 20322751 5 82 2.0 2.0 2.0 1.7 113 chr2L 20322638 intron spir + chr2L 20322694 intron spir + chr2L 20322751 intron spir + chr2L_5_20320001 chr2L_20320001 RAL-280 244 chr2L 20568661 20568680 chr2L 20569051 20569070 X-element 6 389 1.0 4.0 2.5 1.7 409 chr2L 20568661 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-280 245 chr2L 20576219 20576248 chr2L 20583687 20583712 blood 13 7467 4.0 3.5 3.8 2.7 7493 chr2L 20576219 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583712 3` UTR CR44909 - chr2L_13_20575001 chr2L_20575001 RAL-280 246 chr2L 20611236 20611253 chr2L 20611320 20611342 6 84 0.0 0.5 0.2 5.0 106 chr2L 20611236 intron CR44909 - chr2L 20611289 intron CR44909 - chr2L 20611342 intron CR44909 - chr2L_6_20610001 chr2L_20610001 RAL-280 247 chr2L 20623919 20623941 chr2L 20623999 20624015 4 77 3.0 2.5 2.8 1.1 96 chr2L 20623919 intron CR44909 - chr2L 20623967 intron CR44909 - chr2L 20624015 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-280 248 chr2L 20639510 20639531 chr2L 20639786 20639807 INE-1 4 275 1.0 5.0 3.0 1.0 297 chr2L 20639510 intergenic not near genes chr2L 20639658 intergenic CG31680 + chr2L 20639807 intergenic CG31680 + chr2L_4_20635001 chr2L_20635001 RAL-280 249 chr2L 20821499 20821522 chr2L 20821647 20821670 6 148 5.5 3.0 4.2 1.2 171 chr2L 20821499 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821670 intergenic not near genes chr2L_6_20820001 chr2L_20820001 RAL-280 250 chr2L 20865628 20865657 chr2L 20865826 20865855 11 198 0.5 1.0 0.8 6.1 227 chr2L 20865628 intron CG9338 + chr2L 20865742 intron CG9338 + chr2L 20865855 intron CG9338 + chr2L_11_20865001 chr2L_20865001 RAL-280 251 chr2L 20901471 20901483 chr2L 20902635 20902647 1360 4 1164 0.0 4.0 2.0 1.3 1176 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902059 intron,intron CG43739 -,sky - chr2L 20902647 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-280 252 chr2L 21020277 21020308 chr2L 21023954 21023985 NOF 8 3677 2.0 2.5 2.2 2.5 3708 chr2L 21020277 intron CG42238 - chr2L 21022131 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-280 253 chr2L 21041146 21041166 chr2L 21049400 21049426 Tirant 5 8258 1.0 2.0 1.5 2.0 8280 chr2L 21041146 intron CG42238 - chr2L 21045286 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-280 254 chr2L 21062927 21062939 chr2L 21063007 21063019 6 80 3.0 1.5 2.2 1.9 92 chr2L 21062927 intron CG9265 - chr2L 21062973 intron CG9265 - chr2L 21063019 intron CG9265 - chr2L_6_21060001 chr2L_21060001 RAL-280 255 chr2L 21085100 21085117 chr2L 21085276 21085283 5 177 1.0 3.0 2.0 1.7 183 chr2L 21085100 exon CG33509 - chr2L 21085192 exon CG33509 - chr2L 21085283 exon CG33509 - chr2L_5_21085001 chr2L_21085001 RAL-280 256 chr2L 21199243 21199256 chr2L 21199320 21199333 7 77 0.0 3.0 1.5 2.8 90 chr2L 21199243 3` UTR CG31624 - chr2L 21199288 3` UTR CG31624 - chr2L 21199333 3` UTR CG31624 - chr2L_7_21195001 chr2L_21195001 RAL-280 257 chr2L 21218990 21219005 chr2L 21219264 21219279 5 274 1.5 0.5 1.0 2.5 289 chr2L 21218990 intron Atg18b - chr2L 21219134 intron Atg18b - chr2L 21219279 intron Atg18b - chr2L_5_21215001 chr2L_21215001 RAL-280 258 chr2L 21748601 21748613 chr2L 21749919 21749936 9 1318 21.5 5.0 13.2 0.6 1335 chr2L 21748601 intron step - chr2L 21749268 intron step - chr2L 21749936 intron step - chr2L_9_21745001 chr2L_21745001 RAL-280 259 chr2L 21979382 21979404 chr2L 21979481 21979504 5 96 0.5 4.0 2.2 1.6 122 chr2L 21979382 intergenic not near genes chr2L 21979443 intergenic not near genes chr2L 21979504 intergenic not near genes chr2L_5_21975001 chr2L_21975001 RAL-280 260 chr2L 21981685 21981713 chr2L 21990848 21990878 roo 12 9164 1.5 4.5 3.0 3.0 9193 chr2L 21981685 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990878 exon CG2528 - chr2L_12_21985001 chr2L_21985001 RAL-280 261 chr2L 22150631 22150665 chr2L 22150719 22150754 4 88 0.5 1.0 0.8 2.2 123 chr2L 22150631 intron CG42748 + chr2L 22150692 intron CG42748 + chr2L 22150754 intron CG42748 + chr2L_4_22150001 chr2L_22150001 RAL-280 262 chr2R 529323 529344 chr2R 537948 537969 Max-element 4 8625 0.5 1.5 1.0 2.0 8646 chr2R 529323 intron CG40378 + chr2R 533646 intron CG40378 + chr2R 537969 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-280 263 chr2R 552777 552789 chr2R 553969 553986 1360 6 1204 0.5 2.0 1.2 2.7 1209 chr2R 552777 intron CG40378 + chr2R 553382 intron CG40378 + chr2R 553986 intron CG40378 + chr2R_6_550001 chr2R_550001 RAL-280 264 chr2R 1082365 1082384 chr2R 1087128 1087131 Doc 5 4765 4.0 2.5 3.2 1.2 4766 chr2R 1082365 intron rl + chr2R 1084748 intron rl + chr2R 1087131 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-280 265 chr2R 1513955 1513980 chr2R 1514107 1514132 10 150 57.0 49.0 53.0 0.2 177 chr2R 1513955 3` UTR Maf1 - chr2R 1514044 3` UTR Maf1 - chr2R 1514132 3` UTR Maf1 - chr2R_10_1510001 chr2R_1510001 RAL-280 266 chr2R 2498995 2499018 chr2R 2508142 2508165 roo 5 9140 2.0 3.0 2.5 1.4 9170 chr2R 2498995 intron MFS17 - chr2R 2503580 intron MFS17 - chr2R 2508165 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-280 267 chr2R 3144092 3144104 chr2R 3393370 3393382 Doc 4 249278 4.5 12.0 8.2 0.4 249290 chr2R 3144092 intron CG42596 + chr2R 3268737 intergenic not near genes chr2R 3393382 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-280 268 chr2R 3291818 3291958 chr2R 3914992 3915125 4 623170 5.5 15.0 10.2 0.4 623307 chr2R 3291818 intergenic not near genes chr2R 3603472 intergenic not near genes chr2R 3915125 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-280 269 chr2R 3293743 3293764 chr2R 3293820 3293842 4 77 2.0 2.0 2.0 1.3 99 chr2R 3293743 intergenic not near genes chr2R 3293792 intergenic not near genes chr2R 3293842 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-280 270 chr2R 4186919 4186945 chr2R 4187267 4187289 4 347 0.0 1.0 0.5 2.7 370 chr2R 4186919 3` UTR CG40127 - chr2R 4187104 3` UTR CG40127 - chr2R 4187289 3` UTR CG40127 - chr2R_4_4185001 chr2R_4185001 RAL-280 271 chr2R 4604550 4604577 chr2R 4604627 4604656 7 77 4.0 0.5 2.2 2.2 106 chr2R 4604550 intron p120ctn + chr2R 4604603 intron p120ctn + chr2R 4604656 intron p120ctn + chr2R_7_4600001 chr2R_4600001 RAL-280 272 chr2R 4622964 4622988 chr2R 4624109 4624133 1360 8 1152 2.0 0.5 1.2 3.6 1169 chr2R 4622964 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624133 intergenic not near genes chr2R_8_4620001 chr2R_4620001 RAL-280 273 chr2R 4624644 4624673 chr2R 4626549 4626578 Bica 8 1904 1.5 3.5 2.5 2.3 1934 chr2R 4624644 intergenic not near genes chr2R 4625611 intergenic not near genes chr2R 4626578 intergenic not near genes chr2R_8_4625001 chr2R_4625001 RAL-280 274 chr2R 4634156 4634185 chr2R 4634234 4634264 6 75 1.5 2.0 1.8 2.1 108 chr2R 4634156 intergenic not near genes chr2R 4634210 intergenic not near genes chr2R 4634264 intergenic not near genes chr2R_6_4630001 chr2R_4630001 RAL-280 275 chr2R 4750344 4750377 chr2R 4751501 4751529 1360 5 1154 1.5 2.0 1.8 1.8 1185 chr2R 4750344 intron conu + chr2R 4750936 intron conu + chr2R 4751529 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-280 276 chr2R 5008993 5009016 chr2R 5009302 5009325 4 308 3.0 3.0 3.0 1.0 332 chr2R 5008993 intron Ir41a + chr2R 5009159 intron Ir41a + chr2R 5009325 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-280 277 chr2R 5009020 5009026 chr2R 5009301 5009332 4 295 3.0 3.0 3.0 1.0 312 chr2R 5009020 intron Ir41a + chr2R 5009176 intron Ir41a + chr2R 5009332 intron Ir41a + chr2R_4_5005001 chr2R_5005001 RAL-280 278 chr2R 5019289 5019297 chr2R 5019361 5019383 4 80 1.5 1.5 1.5 1.6 94 chr2R 5019289 intron Ir41a + chr2R 5019336 intron Ir41a + chr2R 5019383 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-280 279 chr2R 5080797 5080819 chr2R 5080888 5080910 7 90 0.5 2.0 1.2 3.2 113 chr2R 5080797 intergenic not near genes chr2R 5080854 intergenic not near genes chr2R 5080910 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-280 280 chr2R 5188708 5188734 chr2R 5189401 5189425 gypsy8 7 691 2.0 5.5 3.8 1.5 717 chr2R 5188708 intron Nipped-A - chr2R 5189066 intron Nipped-A - chr2R 5189425 intron Nipped-A - chr2R_7_5185001 chr2R_5185001 RAL-280 281 chr2R 5209780 5209814 chr2R 5210313 5210346 6 532 3.5 1.0 2.2 1.9 566 chr2R 5209780 intron Nipped-A - chr2R 5210063 intron Nipped-A - chr2R 5210346 intron Nipped-A - chr2R_6_5210001 chr2R_5210001 RAL-280 282 chr2R 5303492 5303519 chr2R 5303580 5303604 4 86 11.0 10.5 10.8 0.3 112 chr2R 5303492 intergenic not near genes chr2R 5303548 intergenic not near genes chr2R 5303604 intergenic not near genes chr2R_4_5300001 chr2R_5300001 RAL-280 283 chr2R 5418007 5418027 chr2R 5420639 5420656 Burdock 6 2629 0.0 0.0 0.0 6.0 2649 chr2R 5418007 intron laccase2 + chr2R 5419332 intron laccase2 + chr2R 5420656 intron laccase2 + chr2R_6_5415001 chr2R_5415001 RAL-280 284 chr2R 5472369 5472380 chr2R 5472464 5472475 5 95 5.5 2.5 4.0 1.0 106 chr2R 5472369 intron CG30440 - chr2R 5472422 intron CG30440 - chr2R 5472475 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-280 285 chr2R 5476354 5476380 chr2R 5476898 5476924 8 543 2.5 3.5 3.0 2.0 570 chr2R 5476354 intron CG30440 - chr2R 5476639 intron CG30440 - chr2R 5476924 intron CG30440 - chr2R_8_5475001 chr2R_5475001 RAL-280 286 chr2R 5484861 5484889 chr2R 5484948 5484975 4 87 0.0 0.0 0.0 4.0 114 chr2R 5484861 intron CG30440 - chr2R 5484918 intron CG30440 - chr2R 5484975 intron CG30440 - chr2R_4_5480001 chr2R_5480001 RAL-280 287 chr2R 5581398 5581411 chr2R 5627607 5627620 6 46209 2.0 4.5 3.2 1.4 46222 chr2R 5581398 intergenic not near genes chr2R 5604509 exon Fis1 - chr2R 5627620 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-280 288 chr2R 5621031 5621041 chr2R 5621162 5621179 5 133 4.0 4.5 4.2 1.0 148 chr2R 5621031 intergenic not near genes chr2R 5621105 intergenic not near genes chr2R 5621179 intergenic not near genes chr2R_5_5620001 chr2R_5620001 RAL-280 289 chr2R 5621047 5621053 chr2R 5621161 5621191 6 133 2.0 4.5 3.2 1.4 144 chr2R 5621047 intergenic not near genes chr2R 5621119 intergenic not near genes chr2R 5621191 intergenic not near genes chr2R_6_5620001 chr2R_5620001 RAL-280 290 chr2R 5640023 5640045 chr2R 5640096 5640119 6 75 1.5 4.0 2.8 1.6 96 chr2R 5640023 intergenic not near genes chr2R 5640071 intergenic not near genes chr2R 5640119 intergenic not near genes chr2R_6_5640001 chr2R_5640001 RAL-280 291 chr2R 5655419 5655444 chr2R 5655499 5655524 12 79 1.0 2.5 1.8 4.3 105 chr2R 5655419 exon CG1344 + chr2R 5655472 exon CG1344 + chr2R 5655524 exon CG1344 + chr2R_12_5655001 chr2R_5655001 RAL-280 292 chr2R 5655877 5655908 chr2R 5655965 5655996 5 88 3.5 2.0 2.8 1.3 119 chr2R 5655877 3` UTR CG1344 + chr2R 5655936 3` UTR CG1344 + chr2R 5655996 3` UTR CG1344 + chr2R_5_5655001 chr2R_5655001 RAL-280 293 chr2R 5772518 5772550 chr2R 5772597 5772601 5 73 1.0 1.5 1.2 2.3 83 chr2R 5772518 3` UTR Gp210 + chr2R 5772560 3` UTR Gp210 + chr2R 5772601 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-280 294 chr2R 5897007 5897037 chr2R 5897093 5897123 8 85 3.5 3.5 3.5 1.8 116 chr2R 5897007 intron CG43366 + chr2R 5897065 intron CG43366 + chr2R 5897123 intron CG43366 + chr2R_8_5895001 chr2R_5895001 RAL-280 295 chr2R 5917784 5917796 chr2R 5917863 5917875 4 79 4.5 2.5 3.5 0.9 91 chr2R 5917784 intron CG43366 + chr2R 5917830 intron CG43366 + chr2R 5917875 intron CG43366 + chr2R_4_5915001 chr2R_5915001 RAL-280 296 chr2R 5947934 5947966 chr2R 5948085 5948107 12 148 0.5 0.0 0.2 10.0 173 chr2R 5947934 intergenic not near genes chr2R 5948020 intergenic not near genes chr2R 5948107 intergenic not near genes chr2R_12_5945001 chr2R_5945001 RAL-280 297 chr2R 6033442 6033470 chr2R 6033527 6033555 4 85 3.0 1.0 2.0 1.3 113 chr2R 6033442 intron SCAP - chr2R 6033498 intron SCAP - chr2R 6033555 intron SCAP - chr2R_4_6030001 chr2R_6030001 RAL-280 298 chr2R 6065753 6065783 chr2R 6065865 6065895 11 110 3.5 5.5 4.5 2.0 142 chr2R 6065753 intron CCHa2-R + chr2R 6065824 intron CCHa2-R + chr2R 6065895 exon CCHa2-R + chr2R_11_6065001 chr2R_6065001 RAL-280 299 chr2R 6096719 6096751 chr2R 6101915 6101918 BS 7 5189 2.0 4.5 3.2 1.7 5199 chr2R 6096719 intron EcR - chr2R 6099318 intron EcR - chr2R 6101918 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-280 300 chr2R 6108691 6108707 chr2R 6108791 6108815 5 106 2.0 8.0 5.0 0.8 124 chr2R 6108691 intron EcR - chr2R 6108753 intron EcR - chr2R 6108815 intron EcR - chr2R_5_6105001 chr2R_6105001 RAL-280 301 chr2R 6129324 6129345 chr2R 6129402 6129423 5 78 1.0 3.0 2.0 1.7 99 chr2R 6129324 intron EcR - chr2R 6129374 intron EcR - chr2R 6129423 intron EcR - chr2R_5_6125001 chr2R_6125001 RAL-280 302 chr2R 6131701 6131704 chr2R 6131786 6131791 4 86 1.5 1.5 1.5 1.6 90 chr2R 6131701 intron EcR - chr2R 6131746 intron EcR - chr2R 6131791 intron EcR - chr2R_4_6130001 chr2R_6130001 RAL-280 303 chr2R 6494543 6494554 chr2R 6499305 6499316 F-element 5 4762 1.0 3.5 2.2 1.6 4773 chr2R 6494543 intergenic not near genes chr2R 6496930 intergenic not near genes chr2R 6499316 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-280 304 chr2R 6559111 6559134 chr2R 6559189 6559217 6 82 0.5 5.0 2.8 1.6 106 chr2R 6559111 intron jing + chr2R 6559164 intron jing + chr2R 6559217 intron jing + chr2R_6_6555001 chr2R_6555001 RAL-280 305 chr2R 6597887 6597901 chr2R 6597971 6597989 6 87 3.5 7.5 5.5 0.9 102 chr2R 6597887 intron jing + chr2R 6597938 intron jing + chr2R 6597989 intron jing + chr2R_6_6595001 chr2R_6595001 RAL-280 306 chr2R 6825434 6825459 chr2R 6825527 6825552 7 92 1.5 2.0 1.8 2.5 118 chr2R 6825434 intergenic not near genes chr2R 6825493 intergenic not near genes chr2R 6825552 intergenic not near genes chr2R_7_6825001 chr2R_6825001 RAL-280 307 chr2R 6865372 6865399 chr2R 6865456 6865483 7 84 2.0 1.0 1.5 2.8 111 chr2R 6865372 exon coro - chr2R 6865428 intron coro - chr2R 6865483 intron coro - chr2R_7_6865001 chr2R_6865001 RAL-280 308 chr2R 6866189 6866214 chr2R 6866285 6866310 5 92 2.0 1.5 1.8 1.8 121 chr2R 6866189 intron coro - chr2R 6866250 intron coro - chr2R 6866310 intron coro - chr2R_5_6865001 chr2R_6865001 RAL-280 309 chr2R 6962451 6962480 chr2R 6962809 6962837 5 357 1.0 3.0 2.0 1.7 386 chr2R 6962451 intron,intron mim -,CheB42c - chr2R 6962644 intron,intron mim -,CheB42c - chr2R 6962837 intron,intron mim -,CheB42c - chr2R_5_6960001 chr2R_6960001 RAL-280 310 chr2R 7235823 7235852 chr2R 7240914 7240944 jockey 5 5090 3.0 2.0 2.5 1.4 5121 chr2R 7235823 intergenic not near genes chr2R 7238384 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-280 311 chr2R 7554115 7554133 chr2R 7554202 7554220 5 87 5.0 4.5 4.8 0.9 105 chr2R 7554115 intron Corin + chr2R 7554168 intron Corin + chr2R 7554220 intron Corin + chr2R_5_7550001 chr2R_7550001 RAL-280 312 chr2R 7703824 7703850 chr2R 7703900 7703926 6 72 1.0 1.0 1.0 3.0 102 chr2R 7703824 3` UTR CG34216 - chr2R 7703875 3` UTR CG34216 - chr2R 7703926 3` UTR CG34216 - chr2R_6_7700001 chr2R_7700001 RAL-280 313 chr2R 7714082 7714117 chr2R 7714158 7714192 8 76 0.5 1.0 0.8 4.4 110 chr2R 7714082 exon CG1942 + chr2R 7714137 3` UTR CG1942 + chr2R 7714192 intergenic CG1942 + chr2R_8_7710001 chr2R_7710001 RAL-280 314 chr2R 7814731 7814753 chr2R 7814868 7814889 9 137 1.5 2.0 1.8 3.2 158 chr2R 7814731 3` UTR CG1882 + chr2R 7814810 3` UTR CG1882 + chr2R 7814889 3` UTR CG1882 + chr2R_9_7810001 chr2R_7810001 RAL-280 315 chr2R 7815679 7815702 chr2R 7822147 7822171 Burdock 6 6469 1.5 2.0 1.8 2.1 6492 chr2R 7815679 intergenic CG1882 + chr2R 7818925 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-280 316 chr2R 7869193 7869209 chr2R 7873979 7873995 Doc 5 4786 6.0 2.0 4.0 1.0 4802 chr2R 7869193 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7873995 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-280 317 chr2R 8015648 8015683 chr2R 8017671 8017706 9 2023 0.0 2.0 1.0 4.5 2058 chr2R 8015648 intergenic mir-4981 + chr2R 8016677 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-280 318 chr2R 8040264 8040288 chr2R 8040396 8040417 7 131 2.0 3.5 2.8 1.8 153 chr2R 8040264 intron Optix + chr2R 8040340 intron Optix + chr2R 8040417 intron Optix + chr2R_7_8040001 chr2R_8040001 RAL-280 319 chr2R 8089254 8089267 chr2R 8089340 8089353 5 86 2.5 2.0 2.2 1.6 99 chr2R 8089254 3` UTR sut2 + chr2R 8089304 intergenic sut2 +,sut3 + chr2R 8089353 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-280 320 chr2R 8157901 8157910 chr2R 8157989 8157992 8 86 2.0 4.0 3.0 2.0 91 chr2R 8157901 5` UTR CR44068 + chr2R 8157946 5` UTR CR44068 + chr2R 8157992 5` UTR CR44068 + chr2R_8_8155001 chr2R_8155001 RAL-280 321 chr2R 8158765 8158791 chr2R 8158842 8158868 6 77 1.0 0.5 0.8 3.3 103 chr2R 8158765 intergenic not near genes chr2R 8158816 intergenic not near genes chr2R 8158868 intergenic not near genes chr2R_6_8155001 chr2R_8155001 RAL-280 322 chr2R 8160936 8160951 chr2R 8161026 8161041 1360 8 90 7.5 8.0 7.8 0.9 105 chr2R 8160936 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161041 intron CG8708 - chr2R_8_8160001 chr2R_8160001 RAL-280 323 chr2R 8398228 8398241 chr2R 8403008 8403022 Doc 4 4780 6.0 3.5 4.8 0.7 4794 chr2R 8398228 intron CG2121 - chr2R 8400625 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-280 324 chr2R 8403441 8403453 chr2R 8403524 8403535 4 83 4.0 3.0 3.5 0.9 94 chr2R 8403441 intron CG2121 - chr2R 8403488 intron CG2121 - chr2R 8403535 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-280 325 chr2R 8403663 8403673 chr2R 8403840 8403850 4 177 2.5 4.5 3.5 0.9 187 chr2R 8403663 intron CG2121 - chr2R 8403756 intron CG2121 - chr2R 8403850 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-280 326 chr2R 8411392 8411421 chr2R 8412718 8412747 9 1320 12.5 8.0 10.2 0.8 1355 chr2R 8411392 intron CG2121 - chr2R 8412070 intergenic CG2121 - chr2R 8412747 intergenic not near genes chr2R_9_8410001 chr2R_8410001 RAL-280 327 chr2R 8452040 8452064 chr2R 8452121 8452147 7 82 4.0 2.5 3.2 1.7 107 chr2R 8452040 intergenic Mal-A1 - chr2R 8452094 intergenic Mal-A1 - chr2R 8452147 intergenic Mal-A1 - chr2R_7_8450001 chr2R_8450001 RAL-280 328 chr2R 8508761 8508794 chr2R 8508844 8508867 7 80 5.0 3.0 4.0 1.4 106 chr2R 8508761 intron mtt - chr2R 8508814 intron mtt - chr2R 8508867 intron mtt - chr2R_7_8505001 chr2R_8505001 RAL-280 329 chr2R 8566030 8566067 chr2R 8566982 8567011 1360 13 951 2.5 3.5 3.0 3.2 981 chr2R 8566030 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567011 5` UTR Cyp6a14 - chr2R_13_8565001 chr2R_8565001 RAL-280 330 chr2R 8589764 8589798 chr2R 8589877 8589910 15 111 3.0 3.0 3.0 3.8 146 chr2R 8589764 intergenic not near genes chr2R 8589837 intergenic not near genes chr2R 8589910 intergenic not near genes chr2R_15_8585001 chr2R_8585001 RAL-280 331 chr2R 8658238 8658264 chr2R 8658312 8658326 6 72 2.5 2.0 2.2 1.9 88 chr2R 8658238 intron ptc + chr2R 8658282 intron ptc + chr2R 8658326 intron ptc + chr2R_6_8655001 chr2R_8655001 RAL-280 332 chr2R 8722771 8722795 chr2R 8723006 8723008 pogo 8 234 2.5 3.0 2.8 2.1 237 chr2R 8722771 intron CG14767 - chr2R 8722890 intron CG14767 - chr2R 8723008 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-280 333 chr2R 8995939 8995963 chr2R 8996026 8996050 12 87 3.5 4.0 3.8 2.5 111 chr2R 8995939 exon Np - chr2R 8995994 intron Np - chr2R 8996050 intron Np - chr2R_12_8995001 chr2R_8995001 RAL-280 334 chr2R 9151305 9151331 chr2R 9157775 9157788 Burdock 5 6467 1.5 1.5 1.5 2.0 6483 chr2R 9151305 3` UTR CG30345 + chr2R 9154546 intergenic not near genes chr2R 9157788 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-280 335 chr2R 9183132 9183156 chr2R 9183214 9183238 4 82 2.0 1.0 1.5 1.6 106 chr2R 9183132 intron ltd - chr2R 9183185 intron ltd - chr2R 9183238 intron ltd - chr2R_4_9180001 chr2R_9180001 RAL-280 336 chr2R 9328917 9328938 chr2R 9329019 9329040 4 102 1.0 1.5 1.2 1.8 123 chr2R 9328917 intron,intron CG13739 -,CG13954 - chr2R 9328978 intron,intron CG13739 -,CG13954 - chr2R 9329040 intron,intron CG13739 -,CG13954 - chr2R_4_9325001 chr2R_9325001 RAL-280 337 chr2R 9368126 9368155 chr2R 9368201 9368216 10 72 1.5 0.0 0.8 5.6 90 chr2R 9368126 intron CG13954 - chr2R 9368171 intron CG13954 - chr2R 9368216 intron CG13954 - chr2R_10_9365001 chr2R_9365001 RAL-280 338 chr2R 9510687 9510698 chr2R 9510800 9510814 7 115 0.0 3.0 1.5 2.8 127 chr2R 9510687 intron brp + chr2R 9510750 intron brp + chr2R 9510814 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-280 339 chr2R 9669136 9669159 chr2R 9669237 9669241 4 96 6.0 1.0 3.5 0.9 105 chr2R 9669136 intron Mmp2 - chr2R 9669188 intron Mmp2 - chr2R 9669241 intron Mmp2 - chr2R_4_9665001 chr2R_9665001 RAL-280 340 chr2R 9788007 9788024 chr2R 9788396 9788413 4 389 4.0 2.5 3.2 1.0 406 chr2R 9788007 intron CG1688 - chr2R 9788210 intron CG1688 - chr2R 9788413 intron CG1688 - chr2R_4_9785001 chr2R_9785001 RAL-280 341 chr2R 9871040 9871065 chr2R 9871526 9871551 roo 4 483 1.5 2.5 2.0 1.3 511 chr2R 9871040 intron cbx - chr2R 9871296 intron cbx - chr2R 9871551 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-280 342 chr2R 9966961 9966986 chr2R 9967062 9967087 4 101 2.0 1.5 1.8 1.4 126 chr2R 9966961 intergenic CG12133 + chr2R 9967024 intergenic CG12133 + chr2R 9967087 intergenic CG12133 + chr2R_4_9965001 chr2R_9965001 RAL-280 343 chr2R 9975923 9975945 chr2R 9976038 9976060 6 115 2.0 1.0 1.5 2.4 137 chr2R 9975923 intergenic not near genes chr2R 9975992 intergenic not near genes chr2R 9976060 intergenic not near genes chr2R_6_9975001 chr2R_9975001 RAL-280 344 chr2R 10005847 10005879 chr2R 10007012 10007044 1360 16 1163 7.0 4.5 5.8 2.4 1197 chr2R 10005847 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007044 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-280 345 chr2R 10147642 10147666 chr2R 10147725 10147749 5 83 0.5 1.0 0.8 2.8 107 chr2R 10147642 intron KCNQ - chr2R 10147696 intron KCNQ - chr2R 10147749 intron KCNQ - chr2R_5_10145001 chr2R_10145001 RAL-280 346 chr2R 10176122 10176149 chr2R 10176200 10176228 7 79 1.5 6.0 3.8 1.5 106 chr2R 10176122 intron KCNQ - chr2R 10176175 intron KCNQ - chr2R 10176228 intron KCNQ - chr2R_7_10175001 chr2R_10175001 RAL-280 347 chr2R 10176881 10176912 chr2R 10186048 10186079 roo 4 9167 1.0 0.0 0.5 2.7 9198 chr2R 10176881 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-280 348 chr2R 10190447 10190469 chr2R 10190531 10190542 7 79 2.0 5.5 3.8 1.5 95 chr2R 10190447 intron KCNQ - chr2R 10190494 intron KCNQ - chr2R 10190542 intron KCNQ - chr2R_7_10190001 chr2R_10190001 RAL-280 349 chr2R 10203642 10203655 chr2R 10203727 10203740 4 85 2.0 2.0 2.0 1.3 98 chr2R 10203642 intergenic not near genes chr2R 10203691 intergenic not near genes chr2R 10203740 intergenic not near genes chr2R_4_10200001 chr2R_10200001 RAL-280 350 chr2R 10216192 10216218 chr2R 10216268 10216296 6 77 4.0 2.0 3.0 1.5 104 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216296 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-280 351 chr2R 10307071 10307101 chr2R 10307192 10307222 8 121 0.0 2.0 1.0 4.0 151 chr2R 10307071 3` UTR JhI-1 - chr2R 10307146 3` UTR JhI-1 - chr2R 10307222 3` UTR JhI-1 - chr2R_8_10305001 chr2R_10305001 RAL-280 352 chr2R 10318521 10318542 chr2R 10318607 10318626 5 85 1.5 1.5 1.5 2.0 105 chr2R 10318521 intron Ndg + chr2R 10318574 intron Ndg + chr2R 10318626 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-280 353 chr2R 10387980 10388002 chr2R 10388077 10388099 4 97 0.0 4.5 2.2 1.2 119 chr2R 10387980 intron CG42732 - chr2R 10388040 intron CG42732 - chr2R 10388099 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-280 354 chr2R 10411819 10411837 chr2R 10411901 10411919 9 81 0.5 3.0 1.8 3.2 100 chr2R 10411819 intron CG42732 - chr2R 10411869 intron CG42732 - chr2R 10411919 intron CG42732 - chr2R_9_10410001 chr2R_10410001 RAL-280 355 chr2R 10454096 10454130 chr2R 10454173 10454207 9 77 1.0 2.0 1.5 3.6 111 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_9_10450001 chr2R_10450001 RAL-280 356 chr2R 10562983 10563011 chr2R 10563061 10563089 4 78 2.0 0.0 1.0 2.0 106 chr2R 10562983 intron psq + chr2R 10563036 intron psq + chr2R 10563089 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-280 357 chr2R 10585584 10585591 chr2R 10594167 10594174 Tirant 4 8583 0.5 3.0 1.8 1.4 8590 chr2R 10585584 intron psq + chr2R 10589879 intron psq + chr2R 10594174 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-280 358 chr2R 10668066 10668083 chr2R 10668142 10668159 4 75 5.5 5.5 5.5 0.6 93 chr2R 10668066 intergenic not near genes chr2R 10668112 intergenic not near genes chr2R 10668159 intergenic not near genes chr2R_4_10665001 chr2R_10665001 RAL-280 359 chr2R 10671254 10671277 chr2R 10671328 10671355 10 77 3.5 0.0 1.8 3.6 101 chr2R 10671254 intergenic not near genes chr2R 10671304 intergenic not near genes chr2R 10671355 intergenic not near genes chr2R_10_10670001 chr2R_10670001 RAL-280 360 chr2R 10678941 10678973 chr2R 10679127 10679159 8 183 2.0 4.0 3.0 2.0 218 chr2R 10678941 intron stan + chr2R 10679050 intron stan + chr2R 10679159 intron stan + chr2R_8_10675001 chr2R_10675001 RAL-280 361 chr2R 10790171 10790176 chr2R 10790236 10790261 5 82 1.5 4.5 3.0 1.2 90 chr2R 10790171 intron CG33144 - chr2R 10790216 intron CG33144 - chr2R 10790261 intron CG33144 - chr2R_5_10790001 chr2R_10790001 RAL-280 362 chr2R 10827349 10827361 chr2R 10827433 10827449 4 85 2.5 3.0 2.8 1.1 100 chr2R 10827349 exon CG12325 + chr2R 10827399 3` UTR CG12325 + chr2R 10827449 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_4_10825001 chr2R_10825001 RAL-280 363 chr2R 10871650 10871676 chr2R 10871727 10871760 7 82 0.0 1.0 0.5 4.7 110 chr2R 10871650 intron CG30015 - chr2R 10871705 intron CG30015 - chr2R 10871760 intron CG30015 - chr2R_7_10870001 chr2R_10870001 RAL-280 364 chr2R 10948031 10948037 chr2R 10955581 10955586 17.6 4 7549 2.0 3.5 2.8 1.1 7555 chr2R 10948031 intergenic not near genes chr2R 10951808 intergenic not near genes chr2R 10955586 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-280 365 chr2R 10948042 10948062 chr2R 10955578 10955613 17.6 6 7545 2.0 3.0 2.5 1.7 7571 chr2R 10948042 intergenic not near genes chr2R 10951828 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-280 366 chr2R 10970376 10970410 chr2R 10970467 10970476 9 87 2.5 3.5 3.0 2.2 100 chr2R 10970376 intergenic not near genes chr2R 10970426 intergenic not near genes chr2R 10970476 intergenic not near genes chr2R_9_10970001 chr2R_10970001 RAL-280 367 chr2R 10979662 10979681 chr2R 10980131 10980151 297 4 470 2.0 3.0 2.5 1.1 489 chr2R 10979662 intergenic not near genes chr2R 10979906 intergenic not near genes chr2R 10980151 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-280 368 chr2R 11009814 11009847 chr2R 11018987 11019019 roo 13 9171 2.0 4.0 3.0 3.2 9205 chr2R 11009814 intron luna - chr2R 11014416 intron luna - chr2R 11019019 intron luna - chr2R_13_11010001 chr2R_11010001 RAL-280 369 chr2R 11019877 11019914 chr2R 11024943 11024966 jockey 4 5061 3.0 2.5 2.8 1.1 5089 chr2R 11019877 intron luna - chr2R 11022422 intron luna - chr2R 11024966 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-280 370 chr2R 11032646 11032664 chr2R 11032740 11032757 5 93 2.0 2.5 2.2 1.6 111 chr2R 11032646 intron luna - chr2R 11032702 intron luna - chr2R 11032757 intron luna - chr2R_5_11030001 chr2R_11030001 RAL-280 371 chr2R 11066461 11066469 chr2R 11066539 11066546 4 77 0.5 2.0 1.2 1.8 85 chr2R 11066461 intron luna - chr2R 11066504 intron luna - chr2R 11066546 intron luna - chr2R_4_11065001 chr2R_11065001 RAL-280 372 chr2R 11097367 11097385 chr2R 11097472 11097490 4 105 1.5 1.5 1.5 1.6 123 chr2R 11097367 intron luna - chr2R 11097428 intron luna - chr2R 11097490 intron luna - chr2R_4_11095001 chr2R_11095001 RAL-280 373 chr2R 11142472 11142484 chr2R 11142553 11142565 4 81 2.0 3.0 2.5 1.1 93 chr2R 11142472 intron CG13229 - chr2R 11142518 intron CG13229 - chr2R 11142565 intron CG13229 - chr2R_4_11140001 chr2R_11140001 RAL-280 374 chr2R 11142485 11142507 chr2R 11142552 11142568 11 75 0.5 3.0 1.8 3.9 83 chr2R 11142485 intron CG13229 - chr2R 11142526 intron CG13229 - chr2R 11142568 intron CG13229 - chr2R_11_11140001 chr2R_11140001 RAL-280 375 chr2R 11194763 11194796 chr2R 11194871 11194904 5 108 1.5 2.0 1.8 1.8 141 chr2R 11194763 intron shn + chr2R 11194834 intron shn + chr2R 11194904 intron shn + chr2R_5_11190001 chr2R_11190001 RAL-280 376 chr2R 11207755 11207845 chr2R 11207837 11208038 BS 6 137 0.0 0.0 0.0 6.0 283 chr2R 11207755 intron shn + chr2R 11207896 intron shn + chr2R 11208038 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-280 377 chr2R 11237029 11237053 chr2R 11237121 11237141 12 92 2.0 3.5 2.8 3.2 112 chr2R 11237029 intergenic CG34224 -,CG13217 - chr2R 11237085 intergenic CG34224 -,CG13217 - chr2R 11237141 intergenic CG34224 -,CG13217 - chr2R_12_11235001 chr2R_11235001 RAL-280 378 chr2R 11265728 11265758 chr2R 11265810 11265840 4 82 1.5 2.0 1.8 1.4 112 chr2R 11265728 exon Cpr47Ee + chr2R 11265784 intron Cpr47Ee + chr2R 11265840 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-280 379 chr2R 11344149 11344155 chr2R 11344245 11344251 4 96 0.0 4.0 2.0 1.3 102 chr2R 11344149 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344251 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-280 380 chr2R 11415518 11415550 chr2R 11418666 11418699 opus 9 3147 2.0 1.0 1.5 3.6 3181 chr2R 11415518 intron Drip - chr2R 11417108 intron Drip - chr2R 11418699 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-280 381 chr2R 11472654 11472678 chr2R 11473847 11473875 pogo 10 1196 3.0 1.5 2.2 3.1 1221 chr2R 11472654 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-280 382 chr2R 11567331 11567340 chr2R 11567409 11567417 4 76 2.0 3.0 2.5 1.1 86 chr2R 11567331 intergenic not near genes chr2R 11567374 intergenic not near genes chr2R 11567417 intergenic not near genes chr2R_4_11565001 chr2R_11565001 RAL-280 383 chr2R 11681500 11681526 chr2R 11683993 11684019 7 2492 7.5 16.0 11.8 0.5 2519 chr2R 11681500 intron Buffy + chr2R 11682760 intron Buffy + chr2R 11684019 intron Buffy + chr2R_7_11680001 chr2R_11680001 RAL-280 384 chr2R 11706712 11706721 chr2R 11706801 11706810 4 89 12.0 6.5 9.2 0.4 98 chr2R 11706712 intergenic CR45377 - chr2R 11706761 intergenic not near genes chr2R 11706810 intergenic not near genes chr2R_4_11705001 chr2R_11705001 RAL-280 385 chr2R 12002192 12002203 chr2R 12002341 12002356 5 152 2.0 2.5 2.2 1.6 164 chr2R 12002192 3` UTR otk - chr2R 12002274 exon otk - chr2R 12002356 intron otk - chr2R_5_12000001 chr2R_12000001 RAL-280 386 chr2R 8518778 8518797 chr2R 12066178 12066204 10 3547398 6.0 11.5 8.8 1.0 3547426 chr2R 8518778 intron mtt - chr2R 10292491 intron CAP + chr2R 12066204 intron CG8888 - chr2R_10_10290001 chr2R_10290001 RAL-280 387 chr2R 12146478 12146497 chr2R 12147596 12147618 9 1121 19.5 23.5 21.5 0.4 1140 chr2R 12146478 intron,3` UTR Hen1 +,CG8878 - chr2R 12147048 intron,exon Hen1 +,CG8878 - chr2R 12147618 intron,exon Hen1 +,CG8878 - chr2R_9_12145001 chr2R_12145001 RAL-280 388 chr2R 12145911 12145945 chr2R 12148607 12148639 10 2694 19.0 36.0 27.5 0.4 2728 chr2R 12145911 exon Hen1 + chr2R 12147275 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_10_12145001 chr2R_12145001 RAL-280 389 chr2R 12187472 12187507 chr2R 12190088 12190123 27 2619 86.0 54.5 70.2 0.4 2651 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_27_12185001 chr2R_12185001 RAL-280 390 chr2R 12210137 12210161 chr2R 12210218 12210242 9 80 2.5 5.5 4.0 1.8 105 chr2R 12210137 exon Sr-CII - chr2R 12210190 intron Sr-CII - chr2R 12210242 intron Sr-CII - chr2R_9_12210001 chr2R_12210001 RAL-280 391 chr2R 12265839 12265863 chr2R 12265924 12265948 5 85 0.5 2.0 1.2 2.3 109 chr2R 12265839 intron Cam + chr2R 12265894 intron Cam + chr2R 12265948 intron Cam + chr2R_5_12265001 chr2R_12265001 RAL-280 392 chr2R 12272336 12272354 chr2R 12272419 12272437 5 83 1.0 3.5 2.2 1.6 101 chr2R 12272336 intron Cam + chr2R 12272386 intron Cam + chr2R 12272437 intron Cam + chr2R_5_12270001 chr2R_12270001 RAL-280 393 chr2R 12284304 12284327 chr2R 12284388 12284410 7 83 0.0 2.0 1.0 3.5 106 chr2R 12284304 intron CG42700 + chr2R 12284357 intron CG42700 + chr2R 12284410 intron CG42700 + chr2R_7_12280001 chr2R_12280001 RAL-280 394 chr2R 12363387 12363417 chr2R 12363819 12363847 13 432 0.0 5.5 2.8 3.4 460 chr2R 12363387 intergenic CG30043 + chr2R 12363617 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-280 395 chr2R 12385349 12385379 chr2R 12385430 12385460 8 81 0.5 1.0 0.8 4.4 111 chr2R 12385349 intergenic not near genes chr2R 12385404 intergenic not near genes chr2R 12385460 intergenic not near genes chr2R_8_12385001 chr2R_12385001 RAL-280 396 chr2R 12481158 12481165 chr2R 12482946 12482968 roo 4 1798 2.5 6.0 4.2 0.8 1810 chr2R 12481158 exon Dh44-R2 + chr2R 12482063 intron Dh44-R2 + chr2R 12482968 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-280 397 chr2R 12501705 12501717 chr2R 12503866 12503868 Rt1c 4 2158 3.5 8.5 6.0 0.6 2163 chr2R 12501705 intron fdl - chr2R 12502786 intron fdl - chr2R 12503868 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-280 398 chr2R 12527272 12527304 chr2R 12527481 12527513 7 209 1.5 3.0 2.2 2.2 241 chr2R 12527272 intergenic not near genes chr2R 12527392 intergenic not near genes chr2R 12527513 intergenic not near genes chr2R_7_12525001 chr2R_12525001 RAL-280 399 chr2R 12540474 12540492 chr2R 12540557 12540564 5 80 7.0 3.0 5.0 0.8 90 chr2R 12540474 intron fra + chr2R 12540519 intron fra + chr2R 12540564 intron fra + chr2R_5_12540001 chr2R_12540001 RAL-280 400 chr2R 12610735 12610746 chr2R 12610830 12610841 4 95 4.5 3.5 4.0 0.8 106 chr2R 12610735 intron Amph + chr2R 12610788 intron Amph + chr2R 12610841 intron Amph + chr2R_4_12610001 chr2R_12610001 RAL-280 401 chr2R 12734058 12734089 chr2R 12734138 12734167 7 73 0.0 1.5 0.8 3.9 109 chr2R 12734058 intron CG42663 + chr2R 12734112 intron CG42663 + chr2R 12734167 intron CG42663 + chr2R_7_12730001 chr2R_12730001 RAL-280 402 chr2R 12789292 12789327 chr2R 12797655 12797688 roo 12 8357 1.0 2.0 1.5 4.8 8396 chr2R 12789292 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797688 intron,3` UTR sca +,CR45137 - chr2R_12_12790001 chr2R_12790001 RAL-280 403 chr2R 12817298 12817314 chr2R 12817531 12817547 5 233 0.0 2.0 1.0 2.5 249 chr2R 12817298 intergenic not near genes chr2R 12817422 intergenic not near genes chr2R 12817547 intergenic not near genes chr2R_5_12815001 chr2R_12815001 RAL-280 404 chr2R 12819451 12819478 chr2R 12824520 12824547 jockey 8 5068 2.5 2.0 2.2 2.5 5096 chr2R 12819451 intergenic not near genes chr2R 12821999 intergenic not near genes chr2R 12824547 intergenic not near genes chr2R_8_12820001 chr2R_12820001 RAL-280 405 chr2R 12901989 12902012 chr2R 12902063 12902073 6 72 3.0 2.0 2.5 1.7 84 chr2R 12901989 intergenic not near genes chr2R 12902031 intergenic not near genes chr2R 12902073 intergenic not near genes chr2R_6_12900001 chr2R_12900001 RAL-280 406 chr2R 13092212 13092243 chr2R 13092292 13092323 7 77 2.0 1.0 1.5 2.8 111 chr2R 13092212 intergenic not near genes chr2R 13092268 intergenic not near genes chr2R 13092323 intergenic not near genes chr2R_7_13090001 chr2R_13090001 RAL-280 407 chr2R 13136844 13136869 chr2R 13141638 13141667 Doc 7 4797 3.0 3.0 3.0 1.8 4823 chr2R 13136844 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141667 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-280 408 chr2R 13517419 13517446 chr2R 13517497 13517524 9 78 1.0 2.0 1.5 3.6 105 chr2R 13517419 3` UTR,3` UTR Vmat -,CG13330 + chr2R 13517472 3` UTR Vmat - chr2R 13517524 3` UTR Vmat - chr2R_9_13515001 chr2R_13515001 RAL-280 409 chr2R 13599043 13599076 chr2R 13599126 13599157 13 82 1.0 4.0 2.5 3.7 114 chr2R 13599043 intergenic S-Lap5 + chr2R 13599100 intergenic S-Lap5 + chr2R 13599157 intergenic S-Lap5 + chr2R_13_13595001 chr2R_13595001 RAL-280 410 chr2R 13608274 13608290 chr2R 13608358 13608373 5 82 7.0 3.5 5.2 0.8 99 chr2R 13608274 intergenic CG12464 - chr2R 13608324 intergenic CG12464 - chr2R 13608373 intergenic CG12464 - chr2R_5_13605001 chr2R_13605001 RAL-280 411 chr2R 13619190 13619198 chr2R 13619251 13619283 5 74 3.0 1.5 2.2 1.6 93 chr2R 13619190 intergenic not near genes chr2R 13619236 intergenic not near genes chr2R 13619283 intergenic not near genes chr2R_5_13615001 chr2R_13615001 RAL-280 412 chr2R 13868895 13868929 chr2R 13868974 13869005 6 78 0.0 0.0 0.0 6.0 110 chr2R 13868895 intron shot - chr2R 13868950 intron shot - chr2R 13869005 intron shot - chr2R_6_13865001 chr2R_13865001 RAL-280 413 chr2R 13905616 13905634 chr2R 13907598 13907611 Rt1a 4 1976 2.5 6.0 4.2 0.8 1995 chr2R 13905616 intron shot - chr2R 13906614 intron shot - chr2R 13907611 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-280 414 chr2R 13922626 13922650 chr2R 13922702 13922716 7 74 0.0 1.5 0.8 3.9 90 chr2R 13922626 intron shot - chr2R 13922671 intron shot - chr2R 13922716 intron shot - chr2R_7_13920001 chr2R_13920001 RAL-280 415 chr2R 13925876 13925886 chr2R 13926030 13926040 4 154 1.5 1.5 1.5 1.6 164 chr2R 13925876 intron shot - chr2R 13925958 intron shot - chr2R 13926040 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-280 416 chr2R 14277583 14277605 chr2R 14277665 14277687 5 81 2.5 1.5 2.0 1.7 104 chr2R 14277583 5` UTR Ih + chr2R 14277635 5` UTR Ih + chr2R 14277687 5` UTR Ih + chr2R_5_14275001 chr2R_14275001 RAL-280 417 chr2R 14352689 14352716 chr2R 14352783 14352810 8 92 2.5 2.5 2.5 2.3 121 chr2R 14352689 exon CG8613 + chr2R 14352750 intron CG8613 + chr2R 14352810 intron CG8613 + chr2R_8_14350001 chr2R_14350001 RAL-280 418 chr2R 14357573 14357759 chr2R 14357656 14357899 5 106 1.5 1.0 1.2 2.3 326 chr2R 14357573 intergenic CG8617 -,Arc1 - chr2R 14357736 intergenic Arc1 -,CG8617 - chr2R 14357899 intergenic Arc1 - chr2R_5_14355001 chr2R_14355001 RAL-280 419 chr2R 14373497 14373533 chr2R 14373584 14373618 12 82 2.0 4.5 3.2 2.9 121 chr2R 14373497 exon Obp50d + chr2R 14373558 exon Obp50d + chr2R 14373618 exon Obp50d + chr2R_12_14370001 chr2R_14370001 RAL-280 420 chr2R 14467308 14467317 chr2R 14476466 14476475 roo 4 9157 3.5 1.5 2.5 1.1 9167 chr2R 14467308 intergenic not near genes chr2R 14471892 intergenic not near genes chr2R 14476475 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-280 421 chr2R 14538962 14538990 chr2R 14539038 14539049 7 73 3.5 7.0 5.2 1.1 87 chr2R 14538962 intron ttv + chr2R 14539006 intron ttv + chr2R 14539049 intron ttv + chr2R_7_14535001 chr2R_14535001 RAL-280 422 chr2R 14610246 14610272 chr2R 14610338 14610364 7 89 4.5 4.0 4.2 1.3 118 chr2R 14610246 exon Su(var)2-HP2 - chr2R 14610305 exon Su(var)2-HP2 - chr2R 14610364 exon Su(var)2-HP2 - chr2R_7_14610001 chr2R_14610001 RAL-280 423 chr2R 14733854 14733858 chr2R 14733945 14733949 4 91 5.0 5.0 5.0 0.7 95 chr2R 14733854 intergenic not near genes chr2R 14733902 intergenic not near genes chr2R 14733949 intergenic not near genes chr2R_4_14730001 chr2R_14730001 RAL-280 424 chr2R 14855033 14855064 chr2R 14855125 14855153 9 91 4.0 0.0 2.0 3.0 120 chr2R 14855033 5` UTR Ciao1 - chr2R 14855093 intergenic Ciao1 -,HPS1 + chr2R 14855153 intergenic Ciao1 -,HPS1 + chr2R_9_14855001 chr2R_14855001 RAL-280 425 chr2R 14911718 14911723 chr2R 14911841 14911846 4 123 1.5 3.0 2.2 1.2 128 chr2R 14911718 intron CG10249 - chr2R 14911782 intron CG10249 - chr2R 14911846 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-280 426 chr2R 14922152 14922174 chr2R 14922221 14922250 6 71 1.0 2.0 1.5 2.4 98 chr2R 14922152 intron CG10249 - chr2R 14922201 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-280 427 chr2R 14968453 14968472 chr2R 14968524 14968552 5 77 3.0 4.0 3.5 1.1 99 chr2R 14968453 intron ckn + chr2R 14968502 intron ckn + chr2R 14968552 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-280 428 chr2R 14979763 14979784 chr2R 14979839 14979860 5 76 2.5 1.5 2.0 1.7 97 chr2R 14979763 3` UTR ckn + chr2R 14979812 3` UTR ckn + chr2R 14979860 3` UTR ckn + chr2R_5_14975001 chr2R_14975001 RAL-280 429 chr2R 15004729 15004754 chr2R 15005057 15005083 jockey 9 329 2.5 0.5 1.5 3.6 354 chr2R 15004729 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005083 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-280 430 chr2R 15015466 15015488 chr2R 15022890 15022890 mdg1 8 7421 1.5 0.5 1.0 4.0 7424 chr2R 15015466 intron hbs + chr2R 15019178 intron hbs + chr2R 15022890 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-280 431 chr2R 15054737 15054770 chr2R 15054813 15054847 14 74 4.5 6.0 5.2 2.3 110 chr2R 15054737 intergenic not near genes chr2R 15054792 intergenic not near genes chr2R 15054847 intergenic not near genes chr2R_14_15050001 chr2R_15050001 RAL-280 432 chr2R 15084982 15085001 chr2R 15092031 15092050 297 4 7049 1.5 1.5 1.5 1.6 7068 chr2R 15084982 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-280 433 chr2R 15094482 15094513 chr2R 15094573 15094603 7 85 2.0 4.5 3.2 1.7 121 chr2R 15094482 intergenic not near genes chr2R 15094542 intergenic not near genes chr2R 15094603 intergenic not near genes chr2R_7_15090001 chr2R_15090001 RAL-280 434 chr2R 15119320 15119351 chr2R 15127801 15127832 Tirant 14 8478 3.0 8.0 5.5 2.2 8512 chr2R 15119320 intron chn + chr2R 15123576 intron chn + chr2R 15127832 intron chn + chr2R_14_15120001 chr2R_15120001 RAL-280 435 chr2R 15137969 15138003 chr2R 15138049 15138085 5 81 3.0 0.0 1.5 2.0 116 chr2R 15137969 intron chn + chr2R 15138027 intron chn + chr2R 15138085 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-280 436 chr2R 15150124 15150147 chr2R 15150211 15150234 7 87 3.0 2.0 2.5 2.0 110 chr2R 15150124 intergenic CG7544 + chr2R 15150179 intergenic CG7544 + chr2R 15150234 intergenic not near genes chr2R_7_15150001 chr2R_15150001 RAL-280 437 chr2R 15261856 15261886 chr2R 15267260 15267291 16 5405 21.5 33.5 27.5 0.6 5435 chr2R 15261856 exon ItgalphaPS4 + chr2R 15264574 exon Trpm - chr2R 15267291 exon Trpm - chr2R_16_15260001 chr2R_15260001 RAL-280 438 chr2R 15315741 15315755 chr2R 15315818 15315832 7 77 1.5 2.0 1.8 2.5 91 chr2R 15315741 exon mus210 + chr2R 15315786 exon mus210 + chr2R 15315832 exon mus210 + chr2R_7_15315001 chr2R_15315001 RAL-280 439 chr2R 15336292 15336315 chr2R 15336370 15336393 10 76 4.5 4.5 4.5 1.8 101 chr2R 15336292 intron Hr51 + chr2R 15336342 intron Hr51 + chr2R 15336393 intron Hr51 + chr2R_10_15335001 chr2R_15335001 RAL-280 440 chr2R 16014015 16014024 chr2R 16014112 16014121 7 108 25.0 22.5 23.8 0.3 106 chr2R 16014015 exon Prosbeta1 - chr2R 16014068 intron Prosbeta1 - chr2R 16014121 exon Prosbeta1 - chr2R_7_16010001 chr2R_16010001 RAL-280 441 chr2R 16245416 16245431 chr2R 16245510 16245525 4 94 0.0 1.5 0.8 2.2 109 chr2R 16245416 intron CngA - chr2R 16245470 intron CngA - chr2R 16245525 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-280 442 chr2R 16503871 16503901 chr2R 16503961 16503991 9 90 1.0 2.0 1.5 3.6 120 chr2R 16503871 intron Sema-2a + chr2R 16503931 intron Sema-2a + chr2R 16503991 intron Sema-2a + chr2R_9_16500001 chr2R_16500001 RAL-280 443 chr2R 16511804 16511820 chr2R 16511899 16511904 8 91 0.5 2.5 1.5 3.2 100 chr2R 16511804 intron Sema-2a + chr2R 16511854 intron Sema-2a + chr2R 16511904 intron Sema-2a + chr2R_8_16510001 chr2R_16510001 RAL-280 444 chr2R 16617060 16617088 chr2R 16617139 16617167 4 79 2.0 1.0 1.5 1.6 107 chr2R 16617060 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617167 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-280 445 chr2R 16682091 16682111 chr2R 16682272 16682291 5 180 0.0 0.5 0.2 4.2 200 chr2R 16682091 intron CG30463 - chr2R 16682191 intron CG30463 - chr2R 16682291 intron CG30463 - chr2R_5_16680001 chr2R_16680001 RAL-280 446 chr2R 16740897 16740919 chr2R 16740980 16741013 12 90 4.5 5.5 5.0 2.0 116 chr2R 16740897 intergenic not near genes chr2R 16740955 intergenic not near genes chr2R 16741013 intergenic not near genes chr2R_12_16740001 chr2R_16740001 RAL-280 447 chr2R 16775655 16775672 chr2R 16775922 16775939 5 267 0.5 3.5 2.0 1.7 284 chr2R 16775655 3` UTR Arp53D + chr2R 16775797 intergenic Arp53D + chr2R 16775939 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-280 448 chr2R 16989149 16989166 chr2R 16989226 16989243 4 77 3.5 6.5 5.0 0.7 94 chr2R 16989149 intron Cbp53E + chr2R 16989196 intron Cbp53E + chr2R 16989243 intron Cbp53E + chr2R_4_16985001 chr2R_16985001 RAL-280 449 chr2R 17236506 17236541 chr2R 17241710 17241745 copia 11 5203 1.0 3.0 2.0 3.7 5239 chr2R 17236506 intron mbl + chr2R 17239126 intron mbl + chr2R 17241745 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-280 450 chr2R 17389266 17389304 chr2R 17389357 17389377 11 89 3.0 5.5 4.2 2.1 111 chr2R 17389266 intergenic CR44344 - chr2R 17389322 intergenic CR44344 - chr2R 17389377 intergenic CR44344 - chr2R_11_17385001 chr2R_17385001 RAL-280 451 chr2R 17438023 17438055 chr2R 17438100 17438132 4 77 0.5 0.0 0.2 3.3 109 chr2R 17438023 intron EDTP - chr2R 17438078 intron EDTP - chr2R 17438132 intron EDTP - chr2R_4_17435001 chr2R_17435001 RAL-280 452 chr2R 17459006 17459030 chr2R 17459091 17459115 5 85 4.0 1.5 2.8 1.3 109 chr2R 17459006 intron CG14478 + chr2R 17459060 intron CG14478 + chr2R 17459115 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-280 453 chr2R 17504984 17505009 chr2R 17505065 17505090 8 81 0.0 4.0 2.0 2.7 106 chr2R 17504984 intron CG43164 + chr2R 17505037 intron CG43164 + chr2R 17505090 intron CG43164 + chr2R_8_17505001 chr2R_17505001 RAL-280 454 chr2R 17574357 17574381 chr2R 17579125 17579151 9 4769 25.5 23.5 24.5 0.4 4794 chr2R 17574357 exon Rab4 + chr2R 17576754 exon Dcr-2 - chr2R 17579151 exon Dcr-2 - chr2R_9_17575001 chr2R_17575001 RAL-280 455 chr2R 17686879 17686913 chr2R 17686968 17687002 8 89 3.0 5.0 4.0 1.6 123 chr2R 17686879 intron HPS4 + chr2R 17686940 intron HPS4 + chr2R 17687002 intron HPS4 + chr2R_8_17685001 chr2R_17685001 RAL-280 456 chr2R 17724844 17724873 chr2R 17724926 17724957 4 83 1.5 2.0 1.8 1.4 113 chr2R 17724844 exon CG10933 + chr2R 17724900 3` UTR CG10933 + chr2R 17724957 3` UTR CG10933 + chr2R_4_17720001 chr2R_17720001 RAL-280 457 chr2R 17784026 17784052 chr2R 17784265 17784293 pogo 4 240 1.0 3.0 2.0 1.3 267 chr2R 17784026 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784293 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-280 458 chr2R 17913479 17913511 chr2R 17913587 17913609 6 104 1.0 3.0 2.0 2.0 130 chr2R 17913479 intron Elk + chr2R 17913544 intron Elk + chr2R 17913609 intron Elk + chr2R_6_17910001 chr2R_17910001 RAL-280 459 chr2R 17927694 17927718 chr2R 17928144 17928172 5 451 0.0 2.0 1.0 2.5 478 chr2R 17927694 intergenic not near genes chr2R 17927933 intergenic not near genes chr2R 17928172 intergenic not near genes chr2R_5_17925001 chr2R_17925001 RAL-280 460 chr2R 17936184 17936208 chr2R 17936303 17936326 4 118 0.0 2.0 1.0 2.0 142 chr2R 17936184 intergenic not near genes chr2R 17936255 intergenic not near genes chr2R 17936326 intergenic not near genes chr2R_4_17935001 chr2R_17935001 RAL-280 461 chr2R 18171498 18171515 chr2R 18171637 18171648 5 138 5.0 0.0 2.5 1.4 150 chr2R 18171498 intron Dgp-1 - chr2R 18171573 intron Dgp-1 - chr2R 18171648 intron Dgp-1 - chr2R_5_18170001 chr2R_18170001 RAL-280 462 chr2R 18224592 18224621 chr2R 18224673 18224701 7 80 1.5 0.0 0.8 3.9 109 chr2R 18224592 intergenic not near genes chr2R 18224646 intergenic not near genes chr2R 18224701 intergenic not near genes chr2R_7_18220001 chr2R_18220001 RAL-280 463 chr2R 18241827 18241846 chr2R 18241922 18241941 4 94 0.0 2.0 1.0 2.0 114 chr2R 18241827 intergenic not near genes chr2R 18241884 intergenic not near genes chr2R 18241941 intergenic not near genes chr2R_4_18240001 chr2R_18240001 RAL-280 464 chr2R 18259662 18259693 chr2R 18260045 18260074 7 381 0.5 1.5 1.0 3.5 412 chr2R 18259662 intergenic not near genes chr2R 18259868 intergenic not near genes chr2R 18260074 intergenic not near genes chr2R_7_18255001 chr2R_18255001 RAL-280 465 chr2R 18308282 18308311 chr2R 18308388 18308417 6 106 3.5 2.5 3.0 1.5 135 chr2R 18308282 intron sbb - chr2R 18308350 intron sbb - chr2R 18308417 intron sbb - chr2R_6_18305001 chr2R_18305001 RAL-280 466 chr2R 18358395 18358409 chr2R 18372607 18372621 roo 4 14212 2.0 1.0 1.5 1.6 14226 chr2R 18358395 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372621 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-280 467 chr2R 18408280 18408312 chr2R 18408401 18408432 10 120 3.5 3.5 3.5 2.2 152 chr2R 18408280 exon GstE8 + chr2R 18408356 exon GstE8 + chr2R 18408432 exon GstE8 + chr2R_10_18405001 chr2R_18405001 RAL-280 468 chr2R 18526675 18526689 chr2R 18526871 18526889 6 198 3.5 0.0 1.8 2.1 214 chr2R 18526675 intergenic CG43066 + chr2R 18526782 intergenic CG43066 + chr2R 18526889 intergenic CG43066 + chr2R_6_18525001 chr2R_18525001 RAL-280 469 chr2R 18575811 18575826 chr2R 18581983 18582014 3S18 5 6183 2.5 2.5 2.5 1.4 6203 chr2R 18575811 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582014 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-280 470 chr2R 18590866 18590901 chr2R 18600018 18600053 roo 10 9150 1.5 2.5 2.0 3.3 9187 chr2R 18590866 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-280 471 chr2R 18666428 18666452 chr2R 18666508 18666532 10 79 1.5 1.0 1.2 4.5 104 chr2R 18666428 intergenic not near genes chr2R 18666480 intergenic not near genes chr2R 18666532 intergenic not near genes chr2R_10_18665001 chr2R_18665001 RAL-280 472 chr2R 18863323 18863350 chr2R 18863403 18863428 7 78 3.0 2.5 2.8 1.8 105 chr2R 18863323 intergenic CG43069 + chr2R 18863376 intergenic CG43069 + chr2R 18863428 intergenic CG43069 +,CG43070 + chr2R_7_18860001 chr2R_18860001 RAL-280 473 chr2R 18985286 18985320 chr2R 18985365 18985398 6 78 0.0 2.5 1.2 2.7 112 chr2R 18985286 intergenic not near genes chr2R 18985342 intergenic not near genes chr2R 18985398 intergenic not near genes chr2R_6_18985001 chr2R_18985001 RAL-280 474 chr2R 19007111 19007135 chr2R 19007207 19007235 11 95 5.0 3.5 4.2 2.1 124 chr2R 19007111 intron tn + chr2R 19007173 intron tn + chr2R 19007235 intron tn + chr2R_11_19005001 chr2R_19005001 RAL-280 475 chr2R 19096995 19097020 chr2R 19097075 19097100 8 80 2.5 0.5 1.5 3.2 105 chr2R 19096995 intron 5-HT1A + chr2R 19097048 intron 5-HT1A + chr2R 19097100 intron 5-HT1A + chr2R_8_19095001 chr2R_19095001 RAL-280 476 chr2R 19168739 19168756 chr2R 19168820 19168837 4 81 0.5 1.5 1.0 2.0 98 chr2R 19168739 intron CG10737 + chr2R 19168788 intron CG10737 + chr2R 19168837 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-280 477 chr2R 19714724 19714732 chr2R 19714799 19714807 4 76 0.0 3.0 1.5 1.6 83 chr2R 19714724 3` UTR CG8517 + chr2R 19714766 3` UTR CG8517 + chr2R 19714807 3` UTR CG8517 + chr2R_4_19710001 chr2R_19710001 RAL-280 478 chr2R 19776593 19776630 chr2R 19779916 19779952 jockey 12 3322 3.0 2.5 2.8 3.2 3359 chr2R 19776593 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_12_19775001 chr2R_19775001 RAL-280 479 chr2R 19805189 19805219 chr2R 19805267 19805298 8 78 5.5 1.0 3.2 1.9 109 chr2R 19805189 intergenic not near genes chr2R 19805244 intergenic not near genes chr2R 19805298 intergenic not near genes chr2R_8_19805001 chr2R_19805001 RAL-280 480 chr2R 19807671 19807701 chr2R 19807753 19807779 5 81 0.5 2.0 1.2 2.3 108 chr2R 19807671 intergenic not near genes chr2R 19807725 intergenic not near genes chr2R 19807779 intergenic not near genes chr2R_5_19805001 chr2R_19805001 RAL-280 481 chr2R 19927005 19927022 chr2R 19927095 19927119 7 94 1.0 0.5 0.8 3.9 114 chr2R 19927005 intergenic not near genes chr2R 19927062 intergenic not near genes chr2R 19927119 intergenic not near genes chr2R_7_19925001 chr2R_19925001 RAL-280 482 chr2R 19957432 19957463 chr2R 19962631 19962664 copia 6 5201 0.5 2.0 1.2 2.7 5232 chr2R 19957432 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-280 483 chr2R 20002173 20002199 chr2R 20002292 20002315 7 119 0.0 1.5 0.8 3.9 142 chr2R 20002173 intergenic not near genes chr2R 20002244 intergenic not near genes chr2R 20002315 intergenic not near genes chr2R_7_20000001 chr2R_20000001 RAL-280 484 chr2R 20069243 20069277 chr2R 20071873 20071905 opus 8 2630 2.5 1.5 2.0 2.7 2662 chr2R 20069243 intergenic not near genes chr2R 20070574 intergenic not near genes chr2R 20071905 intergenic not near genes chr2R_8_20070001 chr2R_20070001 RAL-280 485 chr2R 20323402 20323413 chr2R 20326065 20326097 8 2668 29.5 31.0 30.2 0.3 2695 chr2R 20323402 exon CG8920 + chr2R 20324750 intron CG8920 + chr2R 20326097 exon MED8 - chr2R_8_20320001 chr2R_20320001 RAL-280 486 chr2R 20326760 20326788 chr2R 20326837 20326865 7 74 5.0 1.0 3.0 1.8 105 chr2R 20326760 5` UTR MED8 - chr2R 20326812 intergenic MED8 -,CG8929 + chr2R 20326865 intergenic MED8 -,CG8929 + chr2R_7_20325001 chr2R_20325001 RAL-280 487 chr2R 20387101 20387122 chr2R 20387829 20387848 7 728 3.5 5.0 4.2 1.3 747 chr2R 20387101 intergenic not near genes chr2R 20387474 intergenic not near genes chr2R 20387848 intergenic not near genes chr2R_7_20385001 chr2R_20385001 RAL-280 488 chr2R 20414484 20414516 chr2R 20414566 20414599 6 81 2.0 6.5 4.2 1.2 115 chr2R 20414484 intergenic not near genes chr2R 20414542 intergenic not near genes chr2R 20414599 intergenic not near genes chr2R_6_20410001 chr2R_20410001 RAL-280 489 chr2R 20424418 20424450 chr2R 20424499 20424531 18 80 4.5 5.0 4.8 3.1 113 chr2R 20424418 5` UTR CG12484 + chr2R 20424474 5` UTR CG12484 + chr2R 20424531 5` UTR CG12484 + chr2R_18_20420001 chr2R_20420001 RAL-280 490 chr2R 20463663 20463694 chr2R 20463744 20463775 8 78 3.0 2.5 2.8 2.1 112 chr2R 20463663 intron CG12484 + chr2R 20463719 intron CG12484 + chr2R 20463775 intron CG12484 + chr2R_8_20460001 chr2R_20460001 RAL-280 491 chr2R 20494513 20494528 chr2R 20494771 20494784 5 257 4.0 3.5 3.8 1.0 271 chr2R 20494513 intergenic not near genes chr2R 20494648 intergenic not near genes chr2R 20494784 intergenic not near genes chr2R_5_20490001 chr2R_20490001 RAL-280 492 chr2R 20506208 20506242 chr2R 20506314 20506314 11 96 1.5 1.5 1.5 4.4 106 chr2R 20506208 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506261 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506314 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_11_20505001 chr2R_20505001 RAL-280 493 chr2R 20523044 20523064 chr2R 20523149 20523164 9 107 6.0 2.5 4.2 1.7 120 chr2R 20523044 intergenic not near genes chr2R 20523104 intergenic not near genes chr2R 20523164 intergenic not near genes chr2R_9_20520001 chr2R_20520001 RAL-280 494 chr2R 20601719 20601754 chr2R 20601804 20601839 10 85 0.0 2.5 1.2 4.5 120 chr2R 20601719 intron bl + chr2R 20601779 intron bl + chr2R 20601839 intron bl + chr2R_10_20600001 chr2R_20600001 RAL-280 495 chr2R 20739446 20739464 chr2R 20744213 20744232 F-element 5 4768 3.5 2.0 2.8 1.3 4786 chr2R 20739446 intron dpr + chr2R 20741839 intron dpr + chr2R 20744232 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-280 496 chr2R 20853689 20853716 chr2R 20853768 20853791 10 78 1.5 5.0 3.2 2.4 102 chr2R 20853689 intergenic not near genes chr2R 20853740 intergenic not near genes chr2R 20853791 intergenic not near genes chr2R_10_20850001 chr2R_20850001 RAL-280 497 chr2R 20962910 20962937 chr2R 20963008 20963035 8 97 1.5 5.0 3.2 1.9 125 chr2R 20962910 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963035 intergenic not near genes chr2R_8_20960001 chr2R_20960001 RAL-280 498 chr2R 21151129 21151133 chr2R 21153762 21153766 opus 5 2633 0.0 1.0 0.5 3.3 2637 chr2R 21151129 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153766 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-280 499 chr2R 21253682 21253709 chr2R 21253808 21253835 7 126 2.0 1.5 1.8 2.5 153 chr2R 21253682 intergenic not near genes chr2R 21253758 intergenic not near genes chr2R 21253835 intergenic not near genes chr2R_7_21250001 chr2R_21250001 RAL-280 500 chr2R 21373402 21373415 chr2R 21373720 21373729 6 316 2.0 2.5 2.2 1.9 327 chr2R 21373402 intron cv-2 - chr2R 21373566 intron cv-2 - chr2R 21373729 intron cv-2 - chr2R_6_21370001 chr2R_21370001 RAL-280 501 chr2R 21659669 21659682 chr2R 21659903 21659916 6 236 29.0 18.0 23.5 0.2 247 chr2R 21659669 exon Rae1 - chr2R 21659792 exon Rae1 - chr2R 21659916 exon Rae1 - chr2R_6_21655001 chr2R_21655001 RAL-280 502 chr2R 21753091 21753112 chr2R 21753573 21753597 roo 6 482 5.0 2.0 3.5 1.3 506 chr2R 21753091 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753597 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-280 503 chr2R 21777282 21777417 chr2R 21777348 21777500 7 78 3.0 0.5 1.8 2.5 218 chr2R 21777282 intergenic not near genes chr2R 21777391 intergenic not near genes chr2R 21777500 intergenic not near genes chr2R_7_21775001 chr2R_21775001 RAL-280 504 chr2R 21840802 21840831 chr2R 21840878 21840907 11 74 0.5 1.0 0.8 6.1 105 chr2R 21840802 intergenic not near genes chr2R 21840854 intergenic not near genes chr2R 21840907 intergenic not near genes chr2R_11_21840001 chr2R_21840001 RAL-280 505 chr2R 21857346 21857370 chr2R 21857436 21857457 5 86 1.0 4.0 2.5 1.4 111 chr2R 21857346 intergenic not near genes chr2R 21857402 intergenic not near genes chr2R 21857457 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-280 506 chr2R 21906273 21906299 chr2R 21906374 21906397 5 100 1.5 1.0 1.2 2.3 124 chr2R 21906273 intron Fili + chr2R 21906335 intron Fili + chr2R 21906397 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-280 507 chr2R 22035544 22035565 chr2R 22035631 22035652 6 87 2.0 2.0 2.0 2.0 108 chr2R 22035544 intron,3` UTR CG34370 -,CG9308 + chr2R 22035598 intron,3` UTR CG34370 -,CG9308 + chr2R 22035652 intron,3` UTR CG34370 -,CG9308 + chr2R_6_22035001 chr2R_22035001 RAL-280 508 chr2R 22040155 22040185 chr2R 22040236 22040248 4 74 2.0 4.0 3.0 1.0 93 chr2R 22040155 intergenic not near genes chr2R 22040202 intergenic not near genes chr2R 22040248 intergenic not near genes chr2R_4_22040001 chr2R_22040001 RAL-280 509 chr2R 22095039 22095073 chr2R 22095124 22095158 6 85 0.0 3.0 1.5 2.4 119 chr2R 22095039 intron CG11073 - chr2R 22095098 intron CG11073 - chr2R 22095158 intron CG11073 - chr2R_6_22095001 chr2R_22095001 RAL-280 510 chr2R 22124313 22124336 chr2R 22124402 22124425 6 89 1.0 1.5 1.2 2.7 112 chr2R 22124313 3` UTR mei-S332 + chr2R 22124369 intergenic mei-S332 +,GM130 - chr2R 22124425 intergenic mei-S332 +,GM130 - chr2R_6_22120001 chr2R_22120001 RAL-280 511 chr2R 22179227 22179232 chr2R 22179310 22179315 5 83 0.0 4.0 2.0 1.7 88 chr2R 22179227 intron CG11170 - chr2R 22179271 intron CG11170 - chr2R 22179315 intron CG11170 - chr2R_5_22175001 chr2R_22175001 RAL-280 512 chr2R 22349703 22349725 chr2R 22351472 22351509 jockey 8 1780 2.5 2.5 2.5 2.3 1806 chr2R 22349703 intron Liprin-gamma - chr2R 22350606 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-280 513 chr2R 22360384 22360398 chr2R 22360817 22360829 jockey 5 432 2.5 1.5 2.0 1.7 445 chr2R 22360384 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-280 514 chr2R 22525758 22525785 chr2R 22529317 22529344 jockey 6 3559 5.0 2.0 3.5 1.3 3586 chr2R 22525758 intron px - chr2R 22527551 intron px - chr2R 22529344 intron px - chr2R_6_22525001 chr2R_22525001 RAL-280 515 chr2R 22774962 22774999 chr2R 22775381 22775418 jockey 8 419 0.5 2.5 1.5 3.2 456 chr2R 22774962 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775418 intron CG42260 - chr2R_8_22775001 chr2R_22775001 RAL-280 516 chr2R 22789814 22789838 chr2R 22790100 22790124 6 284 4.0 4.5 4.2 1.2 310 chr2R 22789814 intron CG42260 - chr2R 22789969 intron CG42260 - chr2R 22790124 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-280 517 chr2R 22911554 22911563 chr2R 22911821 22911845 6 271 6.5 14.5 10.5 0.5 291 chr2R 22911554 exon nahoda + chr2R 22911700 exon nahoda + chr2R 22911845 exon nahoda + chr2R_6_22910001 chr2R_22910001 RAL-280 518 chr2R 22988636 22988649 chr2R 22988716 22988729 4 80 1.0 1.5 1.2 1.8 93 chr2R 22988636 intron twi + chr2R 22988682 intron twi + chr2R 22988729 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-280 519 chr2R 23000136 23000159 chr2R 23000216 23000239 7 78 1.0 0.5 0.8 3.9 103 chr2R 23000136 intron twi + chr2R 23000188 intron twi + chr2R 23000239 intron twi + chr2R_7_23000001 chr2R_23000001 RAL-280 520 chr2R 23052651 23052681 chr2R 23052727 23052757 7 76 1.5 3.0 2.2 2.2 106 chr2R 23052651 intergenic not near genes chr2R 23052704 intergenic not near genes chr2R 23052757 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-280 521 chr2R 23061777 23061787 chr2R 23061871 23061881 4 94 1.5 3.5 2.5 1.1 104 chr2R 23061777 3` UTR l(2)06496 - chr2R 23061829 3` UTR l(2)06496 - chr2R 23061881 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-280 522 chr2R 23115508 23115523 chr2R 23116022 23116036 4 514 1.5 1.5 1.5 1.6 528 chr2R 23115508 intergenic not near genes chr2R 23115772 intergenic not near genes chr2R 23116036 intergenic not near genes chr2R_4_23115001 chr2R_23115001 RAL-280 523 chr2R 23119593 23119620 chr2R 23119670 23119697 9 77 1.0 0.5 0.8 5.0 104 chr2R 23119593 intergenic not near genes chr2R 23119645 intergenic not near genes chr2R 23119697 intergenic not near genes chr2R_9_23115001 chr2R_23115001 RAL-280 524 chr2R 23290914 23290945 chr2R 23290994 23290999 10 76 4.0 3.0 3.5 2.2 85 chr2R 23290914 3` UTR CR44783 - chr2R 23290956 3` UTR CR44783 - chr2R 23290999 3` UTR CR44783 - chr2R_10_23290001 chr2R_23290001 RAL-280 525 chr2R 23402617 23402632 chr2R 23407693 23407708 flea 4 5075 0.0 0.5 0.2 3.3 5091 chr2R 23402617 intergenic CG3520 - chr2R 23405162 intergenic not near genes chr2R 23407708 intergenic not near genes chr2R_4_23405001 chr2R_23405001 RAL-280 526 chr2R 23422644 23422680 chr2R 23422723 23422758 16 78 3.0 3.5 3.2 3.8 114 chr2R 23422644 intron CG9815 - chr2R 23422701 intron CG9815 - chr2R 23422758 intron CG9815 - chr2R_16_23420001 chr2R_23420001 RAL-280 527 chr2R 23437230 23437244 chr2R 23437307 23437321 4 76 4.0 2.0 3.0 1.0 91 chr2R 23437230 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437321 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-280 528 chr2R 23452005 23452032 chr2R 23453055 23453082 6 1050 0.0 2.0 1.0 3.0 1077 chr2R 23452005 intron CG43795 + chr2R 23452544 intron CG43795 + chr2R 23453082 intron CG43795 + chr2R_6_23450001 chr2R_23450001 RAL-280 529 chr2R 23506331 23506353 chr2R 23506726 23506757 5 393 3.0 4.5 3.8 1.0 426 chr2R 23506331 intergenic not near genes chr2R 23506544 intergenic not near genes chr2R 23506757 intergenic CR43794 - chr2R_5_23505001 chr2R_23505001 RAL-280 530 chr2R 23529596 23529602 chr2R 23537148 23537152 412 4 7555 5.0 3.5 4.2 0.8 7556 chr2R 23529596 exon bw - chr2R 23533374 intron bw - chr2R 23537152 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-280 531 chr2R 23662912 23662934 chr2R 23663002 23663018 9 89 4.0 3.0 3.5 2.0 106 chr2R 23662912 intron Pde8 + chr2R 23662965 intron Pde8 + chr2R 23663018 intron Pde8 + chr2R_9_23660001 chr2R_23660001 RAL-280 532 chr2R 23758325 23758356 chr2R 23758400 23758431 11 74 2.5 4.5 3.5 2.4 106 chr2R 23758325 intron CG9850 - chr2R 23758378 intron CG9850 - chr2R 23758431 intron CG9850 - chr2R_11_23755001 chr2R_23755001 RAL-280 533 chr2R 23840143 23840174 chr2R 23844545 23844563 10 4395 25.0 34.5 29.8 0.3 4420 chr2R 23840143 intergenic snoRNA:Psi18S-176 -,CG5549 +,CR44805 + chr2R 23842353 exon shu - chr2R 23844563 exon Snap29 - chr2R_10_23840001 chr2R_23840001 RAL-280 534 chr2R 23986524 23986546 chr2R 23986604 23986626 5 80 0.5 1.5 1.0 2.5 102 chr2R 23986524 intron Phm - chr2R 23986575 intron Phm - chr2R 23986626 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-280 535 chr2R 24031386 24031405 chr2R 24031470 24031489 5 83 3.5 1.5 2.5 1.4 103 chr2R 24031386 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031489 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-280 536 chr2R 24147066 24147092 chr2R 24154644 24154665 412 10 7575 4.0 4.5 4.2 1.9 7599 chr2R 24147066 intron Dat + chr2R 24150866 intron Dat + chr2R 24154665 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-280 537 chr2R 24177246 24177269 chr2R 24184731 24184754 412 5 7485 2.5 3.5 3.0 1.2 7508 chr2R 24177246 3` UTR Nop60B + chr2R 24181000 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-280 538 chr2R 24224485 24224509 chr2R 24224864 24224875 7 377 3.5 0.5 2.0 2.3 390 chr2R 24224485 intron CG30419 - chr2R 24224680 intron CG30419 - chr2R 24224875 intron CG30419 - chr2R_7_24220001 chr2R_24220001 RAL-280 539 chr2R 24236761 24236795 chr2R 24236854 24236888 15 91 2.5 1.5 2.0 5.0 127 chr2R 24236761 intergenic not near genes chr2R 24236824 intergenic not near genes chr2R 24236888 intergenic not near genes chr2R_15_24235001 chr2R_24235001 RAL-280 540 chr2R 24287143 24287162 chr2R 24287218 24287239 10 76 1.5 3.5 2.5 2.9 96 chr2R 24287143 intron nvy + chr2R 24287191 intron nvy + chr2R 24287239 intron nvy + chr2R_10_24285001 chr2R_24285001 RAL-280 541 chr2R 24353434 24353455 chr2R 24361796 24361812 roo 4 8361 0.5 3.0 1.8 1.4 8378 chr2R 24353434 intron,intron bs +,CR44811 - chr2R 24357623 intron,intron bs +,CR44811 - chr2R 24361812 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-280 542 chr2R 24509308 24509334 chr2R 24509393 24509414 6 84 4.0 2.5 3.2 1.4 106 chr2R 24509308 intergenic Letm1 - chr2R 24509361 intergenic Letm1 - chr2R 24509414 intergenic Letm1 - chr2R_6_24505001 chr2R_24505001 RAL-280 543 chr2R 24702189 24702206 chr2R 24702283 24702299 6 93 0.5 2.5 1.5 2.4 110 chr2R 24702189 intron Mid1 - chr2R 24702244 intron Mid1 - chr2R 24702299 intron Mid1 - chr2R_6_24700001 chr2R_24700001 RAL-280 544 chr2R 24727903 24727917 chr2R 24735394 24735425 mdg1 11 7505 2.5 5.0 3.8 2.3 7522 chr2R 24727903 intron Mid1 - chr2R 24731664 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-280 545 chr2R 24763609 24763643 chr2R 24765584 24765619 G2 19 1974 6.0 7.0 6.5 2.5 2010 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_19_24760001 chr2R_24760001 RAL-280 546 chr2R 24813418 24813443 chr2R 24813516 24813541 7 98 2.5 2.0 2.2 2.2 123 chr2R 24813418 intergenic not near genes chr2R 24813480 intergenic not near genes chr2R 24813541 intergenic not near genes chr2R_7_24810001 chr2R_24810001 RAL-280 547 chr2R 24884050 24884073 chr2R 24884132 24884155 5 82 0.5 0.5 0.5 3.3 105 chr2R 24884050 intron NKAIN + chr2R 24884102 intron NKAIN + chr2R 24884155 intron NKAIN + chr2R_5_24880001 chr2R_24880001 RAL-280 548 chr2R 24893111 24893132 chr2R 24893190 24893217 6 83 0.5 3.5 2.0 2.0 106 chr2R 24893111 intron NaCP60E + chr2R 24893164 intron NaCP60E + chr2R 24893217 intron NaCP60E + chr2R_6_24890001 chr2R_24890001 RAL-280 549 chr2R 25014544 25014576 chr2R 25014620 25014652 12 76 2.5 1.5 2.0 4.0 108 chr2R 25014544 intron uzip + chr2R 25014598 intron uzip + chr2R 25014652 intron uzip + chr2R_12_25010001 chr2R_25010001 RAL-280 550 chr2R 25018340 25018361 chr2R 25018440 25018462 6 98 6.0 1.5 3.8 1.2 122 chr2R 25018340 intron uzip + chr2R 25018401 intron uzip + chr2R 25018462 intron uzip + chr2R_6_25015001 chr2R_25015001 RAL-280 551 chr2R 25081607 25081629 chr2R 25082703 25082725 12 1095 2.0 4.0 3.0 3.0 1118 chr2R 25081607 intron gol - chr2R 25082166 intron gol - chr2R 25082725 intron gol - chr2R_12_25080001 chr2R_25080001 RAL-280 552 chr2R 25101274 25101303 chr2R 25101376 25101405 9 100 1.0 1.5 1.2 4.1 131 chr2R 25101274 intron lov - chr2R 25101340 intron lov - chr2R 25101405 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-280 553 chr2R 25104792 25104809 chr2R 25104917 25104934 5 125 0.5 4.0 2.2 1.6 142 chr2R 25104792 intron lov - chr2R 25104863 intron lov - chr2R 25104934 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-280 554 chr2R 25131013 25131029 chr2R 25131090 25131106 4 77 1.5 0.5 1.0 2.0 93 chr2R 25131013 intron lov - chr2R 25131060 intron lov - chr2R 25131106 intron lov - chr2R_4_25130001 chr2R_25130001 RAL-280 555 chr3L 68984 69014 chr3L 69071 69101 11 86 1.0 3.0 2.0 3.7 117 chr3L 68984 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69101 intergenic CR44510 +,Lsp1gamma + chr3L_11_65001 chr3L_65001 RAL-280 556 chr3L 110213 110239 chr3L 119380 119401 roo 7 9166 1.5 1.5 1.5 2.8 9188 chr3L 110213 intergenic not near genes chr3L 114807 intergenic not near genes chr3L 119401 intergenic not near genes chr3L_7_110001 chr3L_110001 RAL-280 557 chr3L 402687 402716 chr3L 409740 409761 297 10 7049 5.5 3.5 4.5 1.8 7074 chr3L 402687 intergenic not near genes chr3L 406224 intergenic not near genes chr3L 409761 intergenic not near genes chr3L_10_405001 chr3L_405001 RAL-280 558 chr3L 416136 416157 chr3L 416222 416245 5 87 2.0 1.0 1.5 2.0 109 chr3L 416136 intergenic not near genes chr3L 416190 intergenic not near genes chr3L 416245 intergenic not near genes chr3L_5_415001 chr3L_415001 RAL-280 559 chr3L 491642 491669 chr3L 491724 491751 4 82 1.0 0.0 0.5 2.7 109 chr3L 491642 intron klar - chr3L 491696 intron klar - chr3L 491751 intron klar - chr3L_4_490001 chr3L_490001 RAL-280 560 chr3L 514278 514306 chr3L 514355 514383 11 77 2.5 2.5 2.5 3.1 105 chr3L 514278 intron klar - chr3L 514330 intron klar - chr3L 514383 intron klar - chr3L_11_510001 chr3L_510001 RAL-280 561 chr3L 563969 564001 chr3L 564148 564177 11 177 2.0 1.0 1.5 4.4 208 chr3L 563969 intron hipk + chr3L 564073 intron hipk + chr3L 564177 intron hipk + chr3L_11_560001 chr3L_560001 RAL-280 562 chr3L 671996 672016 chr3L 672077 672097 4 81 2.0 1.5 1.8 1.4 101 chr3L 671996 intergenic not near genes chr3L 672046 intergenic not near genes chr3L 672097 intergenic not near genes chr3L_4_670001 chr3L_670001 RAL-280 563 chr3L 858026 858032 chr3L 866487 866508 Tirant 4 8471 2.5 6.5 4.5 0.7 8482 chr3L 858026 intergenic not near genes chr3L 862267 intergenic not near genes chr3L 866508 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-280 564 chr3L 902660 902687 chr3L 903031 903056 10 364 2.0 5.5 3.8 2.1 396 chr3L 902660 intergenic CG13905 + chr3L 902858 intergenic CG13905 + chr3L 903056 exon CG13905 + chr3L_10_900001 chr3L_900001 RAL-280 565 chr3L 925191 925205 chr3L 932617 932631 mdg1 4 7426 3.0 2.5 2.8 1.1 7440 chr3L 925191 intron Glut1 + chr3L 928911 intron Glut1 + chr3L 932631 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-280 566 chr3L 939776 939801 chr3L 940896 940921 jockey 5 1118 2.5 4.5 3.5 1.1 1145 chr3L 939776 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-280 567 chr3L 942164 942190 chr3L 942344 942370 9 180 2.5 0.5 1.5 3.6 206 chr3L 942164 intron Glut1 + chr3L 942267 intron Glut1 + chr3L 942370 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-280 568 chr3L 1003054 1003080 chr3L 1003131 1003152 8 76 2.0 1.5 1.8 2.9 98 chr3L 1003054 intron trio - chr3L 1003103 intron trio - chr3L 1003152 intron trio - chr3L_8_1000001 chr3L_1000001 RAL-280 569 chr3L 1015033 1015055 chr3L 1015142 1015167 10 111 3.0 2.5 2.8 2.6 134 chr3L 1015033 intron trio - chr3L 1015100 intron trio - chr3L 1015167 intron trio - chr3L_10_1015001 chr3L_1015001 RAL-280 570 chr3L 1031575 1031609 chr3L 1031651 1031685 9 70 1.5 4.0 2.8 2.4 110 chr3L 1031575 intron trio - chr3L 1031630 intron trio - chr3L 1031685 intron trio - chr3L_9_1030001 chr3L_1030001 RAL-280 571 chr3L 1040552 1040580 chr3L 1040636 1040664 7 84 3.5 3.0 3.2 1.7 112 chr3L 1040552 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040664 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-280 572 chr3L 1154132 1154152 chr3L 1163282 1163302 roo 4 9150 4.0 2.0 3.0 1.0 9170 chr3L 1154132 intron bab2 - chr3L 1158717 intron bab2 - chr3L 1163302 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-280 573 chr3L 1219595 1219625 chr3L 1227328 1227355 412 9 7732 3.0 2.0 2.5 2.6 7760 chr3L 1219595 intron mwh + chr3L 1223475 intron mwh + chr3L 1227355 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-280 574 chr3L 1324625 1324657 chr3L 1324703 1324735 5 78 2.5 3.5 3.0 1.2 110 chr3L 1324625 intron Myo61F + chr3L 1324680 intron Myo61F + chr3L 1324735 intron Myo61F + chr3L_5_1320001 chr3L_1320001 RAL-280 575 chr3L 1396738 1396759 chr3L 1396822 1396826 6 81 2.5 3.5 3.0 1.5 88 chr3L 1396738 intron Ptp61F - chr3L 1396782 intron Ptp61F - chr3L 1396826 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-280 576 chr3L 1415778 1415801 chr3L 1415855 1415882 10 80 3.0 1.0 2.0 3.3 104 chr3L 1415778 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415882 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-280 577 chr3L 1454235 1454269 chr3L 1454312 1454346 7 76 0.0 2.5 1.2 3.2 111 chr3L 1454235 intron Ptp61F - chr3L 1454290 intron Ptp61F - chr3L 1454346 intron Ptp61F - chr3L_7_1450001 chr3L_1450001 RAL-280 578 chr3L 1502002 1502016 chr3L 1502083 1502097 5 78 1.5 2.5 2.0 1.7 95 chr3L 1502002 intron pUf68 - chr3L 1502050 intron pUf68 - chr3L 1502097 intron pUf68 - chr3L_5_1500001 chr3L_1500001 RAL-280 579 chr3L 1505995 1506033 chr3L 1513592 1513630 17.6 9 7597 2.0 2.5 2.2 2.8 7635 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_9_1505001 chr3L_1505001 RAL-280 580 chr3L 1684033 1684044 chr3L 1684111 1684122 4 78 3.0 3.5 3.2 1.0 89 chr3L 1684033 intron CG7991 + chr3L 1684078 intron CG7991 + chr3L 1684122 intron CG7991 + chr3L_4_1680001 chr3L_1680001 RAL-280 581 chr3L 1728515 1728547 chr3L 1728600 1728631 8 81 2.5 3.5 3.0 2.0 116 chr3L 1728515 intron drpr - chr3L 1728573 intron drpr - chr3L 1728631 intron drpr - chr3L_8_1725001 chr3L_1725001 RAL-280 582 chr3L 1934712 1934721 chr3L 1935926 1935936 4 1214 8.0 1.5 4.8 0.7 1224 chr3L 1934712 exon CG5687 - chr3L 1935324 exon CG5687 - chr3L 1935936 exon CG5687 - chr3L_4_1935001 chr3L_1935001 RAL-280 583 chr3L 2086240 2086270 chr3L 2086340 2086371 9 102 2.0 3.5 2.8 2.4 131 chr3L 2086240 exon sls - chr3L 2086306 exon sls - chr3L 2086371 exon sls - chr3L_9_2085001 chr3L_2085001 RAL-280 584 chr3L 2168772 2168808 chr3L 2168863 2168899 11 91 3.0 0.5 1.8 3.9 127 chr3L 2168772 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_11_2165001 chr3L_2165001 RAL-280 585 chr3L 2199810 2199818 chr3L 2199886 2199894 4 76 0.0 3.5 1.8 1.4 84 chr3L 2199810 intergenic not near genes chr3L 2199852 intergenic not near genes chr3L 2199894 intergenic not near genes chr3L_4_2195001 chr3L_2195001 RAL-280 586 chr3L 2282988 2283023 chr3L 2283064 2283099 4 76 2.5 1.5 2.0 1.3 111 chr3L 2282988 5` UTR MsR2 + chr3L 2283044 5` UTR MsR2 + chr3L 2283099 5` UTR MsR2 + chr3L_4_2280001 chr3L_2280001 RAL-280 587 chr3L 2302574 2302600 chr3L 2302661 2302685 6 87 1.5 1.5 1.5 2.4 111 chr3L 2302574 intergenic not near genes chr3L 2302630 intergenic not near genes chr3L 2302685 intergenic not near genes chr3L_6_2300001 chr3L_2300001 RAL-280 588 chr3L 2321178 2321186 chr3L 2321252 2321263 4 76 1.5 4.0 2.8 1.1 85 chr3L 2321178 intergenic not near genes chr3L 2321220 intergenic not near genes chr3L 2321263 intergenic not near genes chr3L_4_2320001 chr3L_2320001 RAL-280 589 chr3L 2447503 2447538 chr3L 2456658 2456692 roo 5 9154 1.0 4.0 2.5 1.4 9189 chr3L 2447503 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-280 590 chr3L 2533647 2533671 chr3L 2533729 2533753 6 80 4.5 3.5 4.0 1.2 106 chr3L 2533647 intron Spn - chr3L 2533700 intron Spn - chr3L 2533753 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-280 591 chr3L 2680523 2680546 chr3L 2680593 2680626 6 78 1.0 0.0 0.5 4.0 103 chr3L 2680523 intron Fife - chr3L 2680574 intron Fife - chr3L 2680626 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-280 592 chr3L 2927839 2927866 chr3L 2936116 2936143 Tirant 6 8277 0.5 0.0 0.2 5.0 8304 chr3L 2927839 intron Shab + chr3L 2931991 intron Shab + chr3L 2936143 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-280 593 chr3L 3034665 3034681 chr3L 3034745 3034761 4 80 3.0 3.0 3.0 1.0 96 chr3L 3034665 intergenic not near genes chr3L 3034713 intergenic CG2162 + chr3L 3034761 intergenic CG2162 + chr3L_4_3030001 chr3L_3030001 RAL-280 594 chr3L 3050912 3050926 chr3L 3050995 3051013 5 86 2.0 4.0 3.0 1.2 101 chr3L 3050912 intron CG32485 + chr3L 3050962 intron CG32485 + chr3L 3051013 exon CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-280 595 chr3L 3057257 3057274 chr3L 3057401 3057418 9 143 7.0 4.5 5.8 1.3 161 chr3L 3057257 exon CG32486 - chr3L 3057338 intron CG32486 - chr3L 3057418 intron CG32486 - chr3L_9_3055001 chr3L_3055001 RAL-280 596 chr3L 3281440 3281477 chr3L 3281934 3281951 Doc 13 491 1.0 4.0 2.5 3.7 511 chr3L 3281440 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281951 intron CG12017 + chr3L_13_3280001 chr3L_3280001 RAL-280 597 chr3L 3436291 3436313 chr3L 3436370 3436392 4 79 0.5 1.5 1.0 2.0 101 chr3L 3436291 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436392 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-280 598 chr3L 3475077 3475106 chr3L 3475519 3475550 jockey 8 444 2.5 2.0 2.2 2.5 473 chr3L 3475077 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-280 599 chr3L 3494751 3494778 chr3L 3494829 3494856 7 78 1.0 1.5 1.2 3.2 105 chr3L 3494751 intron CG42324 + chr3L 3494804 intron CG42324 + chr3L 3494856 intron CG42324 + chr3L_7_3490001 chr3L_3490001 RAL-280 600 chr3L 3601211 3601236 chr3L 3601293 3601319 6 82 3.0 0.0 1.5 2.4 108 chr3L 3601211 intron Eip63E + chr3L 3601265 intron Eip63E + chr3L 3601319 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-280 601 chr3L 3601304 3601332 chr3L 3606615 3606642 copia 8 5310 0.0 1.0 0.5 5.3 5338 chr3L 3601304 intron Eip63E + chr3L 3603973 intron Eip63E + chr3L 3606642 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-280 602 chr3L 3763757 3763766 chr3L 3763838 3763847 5 79 5.0 0.0 2.5 1.4 90 chr3L 3763757 intron CG32264 - chr3L 3763802 intron CG32264 - chr3L 3763847 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-280 603 chr3L 3815062 3815082 chr3L 3815142 3815163 12 81 2.0 3.0 2.5 3.4 101 chr3L 3815062 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815112 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815163 intron,intron Scsalpha +,CR43932 - chr3L_12_3815001 chr3L_3815001 RAL-280 604 chr3L 3833738 3833743 chr3L 3833979 3833984 pogo 4 241 3.5 0.5 2.0 1.3 246 chr3L 3833738 intron enc + chr3L 3833861 intron enc + chr3L 3833984 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-280 605 chr3L 3890974 3890978 chr3L 3891055 3891059 5 81 3.0 0.5 1.8 1.8 85 chr3L 3890974 intergenic not near genes chr3L 3891016 intergenic not near genes chr3L 3891059 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-280 606 chr3L 4058842 4058871 chr3L 4058922 4058951 5 80 2.0 0.5 1.2 2.3 109 chr3L 4058842 3` UTR CG1136 + chr3L 4058896 3` UTR CG1136 + chr3L 4058951 3` UTR CG1136 + chr3L_5_4055001 chr3L_4055001 RAL-280 607 chr3L 4613569 4613584 chr3L 4613717 4613732 5 148 6.5 5.0 5.8 0.7 163 chr3L 4613569 intron Src64B - chr3L 4613650 intron Src64B - chr3L 4613732 intron Src64B - chr3L_5_4610001 chr3L_4610001 RAL-280 608 chr3L 4613587 4613601 chr3L 4613716 4613749 5 140 3.0 5.0 4.0 1.0 162 chr3L 4613587 intron Src64B - chr3L 4613668 intron Src64B - chr3L 4613749 intron Src64B - chr3L_5_4610001 chr3L_4610001 RAL-280 609 chr3L 4782106 4782126 chr3L 4782206 4782224 9 99 4.5 0.5 2.5 2.6 118 chr3L 4782106 intron RhoGEF64C + chr3L 4782165 intron RhoGEF64C + chr3L 4782224 intron RhoGEF64C + chr3L_9_4780001 chr3L_4780001 RAL-280 610 chr3L 4858306 4858335 chr3L 4858396 4858425 12 85 4.0 3.0 3.5 2.7 119 chr3L 4858306 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_12_4855001 chr3L_4855001 RAL-280 611 chr3L 4958418 4958448 chr3L 4958506 4958516 4 83 1.0 0.0 0.5 2.7 98 chr3L 4958418 intron Con - chr3L 4958467 intron Con - chr3L 4958516 intron Con - chr3L_4_4955001 chr3L_4955001 RAL-280 612 chr3L 4969333 4969356 chr3L 4969457 4969480 13 124 2.0 2.5 2.2 4.1 147 chr3L 4969333 intron Con - chr3L 4969406 intron Con - chr3L 4969480 intron Con - chr3L_13_4965001 chr3L_4965001 RAL-280 613 chr3L 5257323 5257363 chr3L 5257488 5257527 5 165 2.0 1.5 1.8 1.8 204 chr3L 5257323 intron shep - chr3L 5257425 intron shep - chr3L 5257527 intron shep - chr3L_5_5255001 chr3L_5255001 RAL-280 614 chr3L 5259447 5259476 chr3L 5259527 5259539 6 73 1.0 1.5 1.2 2.7 92 chr3L 5259447 intron shep - chr3L 5259493 intron shep - chr3L 5259539 intron shep - chr3L_6_5255001 chr3L_5255001 RAL-280 615 chr3L 5327467 5327474 chr3L 5327552 5327558 5 85 1.5 1.5 1.5 2.0 91 chr3L 5327467 intergenic not near genes chr3L 5327512 intergenic not near genes chr3L 5327558 intergenic not near genes chr3L_5_5325001 chr3L_5325001 RAL-280 616 chr3L 5727175 5727198 chr3L 5727646 5727661 7 468 6.0 2.0 4.0 1.4 486 chr3L 5727175 intron sif + chr3L 5727418 intron sif + chr3L 5727661 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-280 617 chr3L 5781976 5781992 chr3L 5782183 5782186 8 207 4.5 1.0 2.8 2.1 210 chr3L 5781976 intron,intron PGRP-LD +,Pmi + chr3L 5782081 exon,3` UTR PGRP-LD +,Pmi + chr3L 5782186 exon,3` UTR PGRP-LD +,Pmi + chr3L_8_5780001 chr3L_5780001 RAL-280 618 chr3L 5926315 5926352 chr3L 5926502 5926520 BS 8 176 2.0 3.0 2.5 2.3 205 chr3L 5926315 intron Vap-33B + chr3L 5926418 intron Vap-33B + chr3L 5926520 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-280 619 chr3L 5963090 5963120 chr3L 5963171 5963200 10 78 1.0 2.5 1.8 3.6 110 chr3L 5963090 intergenic not near genes chr3L 5963145 intergenic not near genes chr3L 5963200 intergenic not near genes chr3L_10_5960001 chr3L_5960001 RAL-280 620 chr3L 6052654 6052669 chr3L 6052734 6052742 6 81 6.5 11.0 8.8 0.6 88 chr3L 6052654 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052742 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-280 621 chr3L 6220914 6220946 chr3L 6230066 6230098 roo 11 9151 3.5 5.5 4.5 2.0 9184 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_11_6225001 chr3L_6225001 RAL-280 622 chr3L 6335020 6335038 chr3L 6335490 6335509 297 6 467 3.0 3.0 3.0 1.5 489 chr3L 6335020 intron CG13300 - chr3L 6335264 intron CG13300 - chr3L 6335509 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-280 623 chr3L 6358630 6358652 chr3L 6358707 6358729 9 76 3.5 3.0 3.2 2.1 99 chr3L 6358630 intergenic not near genes chr3L 6358680 intergenic not near genes chr3L 6358729 intergenic not near genes chr3L_9_6355001 chr3L_6355001 RAL-280 624 chr3L 6466031 6466044 chr3L 6466116 6466126 7 83 1.0 3.0 2.0 2.3 95 chr3L 6466031 intron CG42747 + chr3L 6466078 intron CG42747 + chr3L 6466126 intron CG42747 + chr3L_7_6465001 chr3L_6465001 RAL-280 625 chr3L 6575553 6575570 chr3L 6575711 6575728 5 158 1.0 2.5 1.8 1.8 175 chr3L 6575553 intron,intron CG18769 +,jv - chr3L 6575640 intron,intron CG18769 +,jv - chr3L 6575728 intron,intron CG18769 +,jv - chr3L_5_6575001 chr3L_6575001 RAL-280 626 chr3L 6652084 6652105 chr3L 6652162 6652171 4 75 3.0 5.0 4.0 0.8 87 chr3L 6652084 intergenic not near genes chr3L 6652128 intergenic not near genes chr3L 6652171 intergenic not near genes chr3L_4_6650001 chr3L_6650001 RAL-280 627 chr3L 6657451 6657476 chr3L 6657603 6657619 8 151 2.5 3.0 2.8 2.1 168 chr3L 6657451 intergenic not near genes chr3L 6657535 intergenic not near genes chr3L 6657619 intergenic not near genes chr3L_8_6655001 chr3L_6655001 RAL-280 628 chr3L 6855938 6855956 chr3L 6860722 6860735 Doc 5 4783 3.0 10.0 6.5 0.7 4797 chr3L 6855938 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860735 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-280 629 chr3L 6868731 6868861 chr3L 6868809 6869089 4 190 1.5 1.5 1.5 1.6 358 chr3L 6868731 intergenic not near genes chr3L 6868910 intergenic not near genes chr3L 6869089 intergenic not near genes chr3L_4_6865001 chr3L_6865001 RAL-280 630 chr3L 6887520 6887546 chr3L 6895009 6895038 roo 8 7491 2.5 2.0 2.2 2.5 7518 chr3L 6887520 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895038 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-280 631 chr3L 6958973 6959004 chr3L 6963552 6963583 7 4580 30.5 34.5 32.5 0.2 4610 chr3L 6958973 exon Surf1 + chr3L 6961278 exon sgl - chr3L 6963583 intron sgl - chr3L_7_6960001 chr3L_6960001 RAL-280 632 chr3L 7090923 7090942 chr3L 7091007 7091026 4 84 0.0 1.5 0.8 2.2 103 chr3L 7090923 intergenic not near genes chr3L 7090974 intergenic not near genes chr3L 7091026 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-280 633 chr3L 7091532 7091556 chr3L 7091608 7091627 4 74 3.0 1.5 2.2 1.2 95 chr3L 7091532 intergenic not near genes chr3L 7091580 intergenic not near genes chr3L 7091627 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-280 634 chr3L 7404521 7404539 chr3L 7404741 7404759 5 220 0.5 3.5 2.0 1.7 238 chr3L 7404521 intergenic CG8560 - chr3L 7404640 intergenic CG8560 - chr3L 7404759 intergenic not near genes chr3L_5_7400001 chr3L_7400001 RAL-280 635 chr3L 7505791 7505796 chr3L 7505845 7505870 4 64 22.0 15.0 18.5 0.2 79 chr3L 7505791 exon CG7548 - chr3L 7505830 exon CG7548 - chr3L 7505870 exon CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-280 636 chr3L 7508683 7508698 chr3L 7508767 7508781 4 84 2.5 2.5 2.5 1.1 98 chr3L 7508683 intergenic not near genes chr3L 7508732 intergenic not near genes chr3L 7508781 intergenic not near genes chr3L_4_7505001 chr3L_7505001 RAL-280 637 chr3L 7576220 7576245 chr3L 7576301 7576333 8 86 1.5 2.5 2.0 2.7 113 chr3L 7576220 intergenic not near genes chr3L 7576276 intergenic not near genes chr3L 7576333 intergenic not near genes chr3L_8_7575001 chr3L_7575001 RAL-280 638 chr3L 7744702 7744731 chr3L 7744794 7744822 5 91 0.5 0.0 0.2 4.2 120 chr3L 7744702 intron CG32373 + chr3L 7744762 intron CG32373 + chr3L 7744822 intron CG32373 + chr3L_5_7740001 chr3L_7740001 RAL-280 639 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 6.5 9.0 7.8 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-280 640 chr3L 7793711 7793741 chr3L 7800763 7800793 297 5 7052 1.5 3.5 2.5 1.4 7082 chr3L 7793711 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-280 641 chr3L 7886513 7886547 chr3L 7889031 7889065 Stalker4 7 2518 0.5 0.5 0.5 4.7 2552 chr3L 7886513 intron CG32365 + chr3L 7887789 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-280 642 chr3L 7971845 7971878 chr3L 7971925 7971944 6 76 2.0 2.5 2.2 1.9 99 chr3L 7971845 3` UTR RNaseX25 + chr3L 7971894 3` UTR RNaseX25 + chr3L 7971944 3` UTR RNaseX25 + chr3L_6_7970001 chr3L_7970001 RAL-280 643 chr3L 8208129 8208157 chr3L 8208258 8208289 12 130 1.0 3.0 2.0 4.0 160 chr3L 8208129 intergenic not near genes chr3L 8208209 intergenic not near genes chr3L 8208289 intergenic not near genes chr3L_12_8205001 chr3L_8205001 RAL-280 644 chr3L 8248319 8248342 chr3L 8248409 8248432 5 87 0.5 1.0 0.8 2.8 113 chr3L 8248319 intron Dscam4 + chr3L 8248376 intron Dscam4 + chr3L 8248432 intron Dscam4 + chr3L_5_8245001 chr3L_8245001 RAL-280 645 chr3L 8295790 8295825 chr3L 8295948 8295983 5 158 2.5 1.5 2.0 1.7 193 chr3L 8295790 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-280 646 chr3L 8392758 8392769 chr3L 8392844 8392852 4 86 0.5 2.0 1.2 1.8 94 chr3L 8392758 intergenic Jon66Cii -,Jon66Ci + chr3L 8392805 intergenic Jon66Cii -,Jon66Ci + chr3L 8392852 3` UTR Jon66Cii - chr3L_4_8390001 chr3L_8390001 RAL-280 647 chr3L 8471864 8471885 chr3L 8477676 8477691 7 5805 15.0 37.5 26.2 0.3 5827 chr3L 8471864 3` UTR Gug + chr3L 8474778 intron CG43163 - chr3L 8477691 exon CG43163 - chr3L_7_8470001 chr3L_8470001 RAL-280 648 chr3L 8551739 8551770 chr3L 8551822 8551853 11 82 3.0 2.5 2.8 2.9 114 chr3L 8551739 intron rhea + chr3L 8551796 intron rhea + chr3L 8551853 intron rhea + chr3L_11_8550001 chr3L_8550001 RAL-280 649 chr3L 8582946 8582966 chr3L 8583026 8583046 5 80 2.0 0.0 1.0 2.5 100 chr3L 8582946 intron CG43078 + chr3L 8582996 intron CG43078 + chr3L 8583046 intron CG43078 + chr3L_5_8580001 chr3L_8580001 RAL-280 650 chr3L 8826774 8826808 chr3L 8826892 8826926 9 118 1.0 1.0 1.0 4.5 152 chr3L 8826774 intergenic not near genes chr3L 8826850 intergenic not near genes chr3L 8826926 intergenic not near genes chr3L_9_8825001 chr3L_8825001 RAL-280 651 chr3L 8849207 8849240 chr3L 8849287 8849320 10 76 2.5 0.5 1.5 4.0 113 chr3L 8849207 intron dally + chr3L 8849264 intron dally + chr3L 8849320 intron dally + chr3L_10_8845001 chr3L_8845001 RAL-280 652 chr3L 9013691 9013693 chr3L 18417066 18417066 6 9403375 25.0 21.0 23.0 0.2 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-280 653 chr3L 9076926 9076957 chr3L 9084486 9084517 412 9 7559 3.0 3.0 3.0 2.2 7591 chr3L 9076926 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084517 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-280 654 chr3L 9130570 9130579 chr3L 9134321 9134340 412 5 3759 4.5 2.5 3.5 1.1 3770 chr3L 9130570 intergenic bol - chr3L 9132455 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-280 655 chr3L 9193155 9193170 chr3L 9193239 9193253 8 83 2.5 3.0 2.8 2.1 98 chr3L 9193155 intergenic not near genes chr3L 9193204 intergenic not near genes chr3L 9193253 intergenic not near genes chr3L_8_9190001 chr3L_9190001 RAL-280 656 chr3L 9219244 9219275 chr3L 9219916 9219932 jockey 15 669 6.0 5.0 5.5 2.3 688 chr3L 9219244 intergenic not near genes chr3L 9219588 intergenic not near genes chr3L 9219932 intergenic not near genes chr3L_15_9215001 chr3L_9215001 RAL-280 657 chr3L 9516570 9516594 chr3L 9516651 9516675 6 81 3.0 5.5 4.2 1.2 105 chr3L 9516570 intron CG33700 - chr3L 9516622 intron CG33700 - chr3L 9516675 intron CG33700 - chr3L_6_9515001 chr3L_9515001 RAL-280 658 chr3L 9575907 9575930 chr3L 9580985 9580990 jockey 8 5074 6.0 3.0 4.5 1.5 5083 chr3L 9575907 intron CG42673 + chr3L 9578448 intron CG42673 + chr3L 9580990 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-280 659 chr3L 9646822 9646841 chr3L 9646920 9646939 9 98 1.5 1.5 1.5 3.6 117 chr3L 9646822 intron,intron fry -,CG33696 + chr3L 9646880 intron,intron fry -,CG33696 + chr3L 9646939 intron,intron fry -,CG33696 + chr3L_9_9645001 chr3L_9645001 RAL-280 660 chr3L 9675853 9675868 chr3L 9675931 9675951 5 82 3.0 2.5 2.8 1.3 98 chr3L 9675853 intron fry - chr3L 9675902 intron fry - chr3L 9675951 intron fry - chr3L_5_9675001 chr3L_9675001 RAL-280 661 chr3L 9699933 9699956 chr3L 9700019 9700043 6 86 1.0 1.0 1.0 3.0 110 chr3L 9699933 3` UTR UbcD4 + chr3L 9699988 3` UTR UbcD4 + chr3L 9700043 3` UTR UbcD4 + chr3L_6_9695001 chr3L_9695001 RAL-280 662 chr3L 9732420 9732442 chr3L 9732498 9732520 5 78 2.0 1.5 1.8 1.8 100 chr3L 9732420 exon CG6749 - chr3L 9732470 intron CG6749 - chr3L 9732520 intron CG6749 - chr3L_5_9730001 chr3L_9730001 RAL-280 663 chr3L 9775382 9775394 chr3L 9775742 9775754 4 360 0.0 5.5 2.8 1.1 372 chr3L 9775382 intron CG8177 + chr3L 9775568 intron CG8177 + chr3L 9775754 intron CG8177 + chr3L_4_9775001 chr3L_9775001 RAL-280 664 chr3L 9824155 9824168 chr3L 9824234 9824247 5 79 3.5 0.0 1.8 1.8 92 chr3L 9824155 intron CG43897 + chr3L 9824201 intron CG43897 + chr3L 9824247 intron CG43897 + chr3L_5_9820001 chr3L_9820001 RAL-280 665 chr3L 9907882 9907894 chr3L 9907959 9907970 5 75 4.0 6.0 5.0 0.8 88 chr3L 9907882 intergenic CG34356 + chr3L 9907926 intergenic CG34356 + chr3L 9907970 intergenic CG34356 + chr3L_5_9905001 chr3L_9905001 RAL-280 666 chr3L 9916054 9916071 chr3L 9916598 9916614 6 544 0.0 3.0 1.5 2.4 560 chr3L 9916054 intron CG34356 + chr3L 9916334 intron CG34356 + chr3L 9916614 intron CG34356 + chr3L_6_9915001 chr3L_9915001 RAL-280 667 chr3L 9940555 9940578 chr3L 9940687 9940706 8 132 4.0 1.0 2.5 2.3 151 chr3L 9940555 intron CG34356 + chr3L 9940630 intron CG34356 + chr3L 9940706 intron CG34356 + chr3L_8_9940001 chr3L_9940001 RAL-280 668 chr3L 10008121 10008139 chr3L 10008237 10008256 8 117 2.0 1.5 1.8 2.9 135 chr3L 10008121 intron dpr6 + chr3L 10008188 intron dpr6 + chr3L 10008256 intron dpr6 + chr3L_8_10005001 chr3L_10005001 RAL-280 669 chr3L 10159322 10159354 chr3L 10159407 10159442 8 87 1.0 2.5 1.8 2.9 120 chr3L 10159322 intron dpr10 - chr3L 10159382 intron dpr10 - chr3L 10159442 intron dpr10 - chr3L_8_10155001 chr3L_10155001 RAL-280 670 chr3L 10219238 10219260 chr3L 10219335 10219357 9 97 3.0 0.5 1.8 3.2 119 chr3L 10219238 exon CG32055 - chr3L 10219298 exon CG32055 - chr3L 10219357 exon CG32055 - chr3L_9_10215001 chr3L_10215001 RAL-280 671 chr3L 10308741 10308768 chr3L 10308817 10308845 16 76 1.5 1.5 1.5 6.4 104 chr3L 10308741 intergenic not near genes chr3L 10308793 intergenic not near genes chr3L 10308845 intergenic not near genes chr3L_16_10305001 chr3L_10305001 RAL-280 672 chr3L 10386388 10386395 chr3L 10386464 10386472 5 76 1.5 3.0 2.2 1.6 84 chr3L 10386388 intergenic CR45245 + chr3L 10386430 intergenic CR45245 + chr3L 10386472 5` UTR CR45245 + chr3L_5_10385001 chr3L_10385001 RAL-280 673 chr3L 10414945 10414974 chr3L 10417312 10417346 Doc 6 2367 0.5 0.0 0.2 5.0 2401 chr3L 10414945 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-280 674 chr3L 10474974 10475003 chr3L 10475061 10475089 12 86 2.5 1.5 2.0 4.0 115 chr3L 10474974 intergenic not near genes chr3L 10475032 intergenic not near genes chr3L 10475089 intergenic not near genes chr3L_12_10475001 chr3L_10475001 RAL-280 675 chr3L 10762839 10762851 chr3L 10762919 10762935 4 82 4.5 3.5 4.0 0.8 96 chr3L 10762839 intergenic not near genes chr3L 10762887 intergenic not near genes chr3L 10762935 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-280 676 chr3L 10764135 10764152 chr3L 10764211 10764232 7 79 5.5 1.0 3.2 1.7 97 chr3L 10764135 intergenic not near genes chr3L 10764184 intergenic not near genes chr3L 10764232 intergenic not near genes chr3L_7_10760001 chr3L_10760001 RAL-280 677 chr3L 10803285 10803306 chr3L 10803754 10803776 5 469 0.5 0.5 0.5 3.3 491 chr3L 10803285 intergenic not near genes chr3L 10803530 intergenic CR44347 - chr3L 10803776 intergenic CR44347 - chr3L_5_10800001 chr3L_10800001 RAL-280 678 chr3L 11087067 11087089 chr3L 11088851 11088877 S-element 8 1787 0.0 3.5 1.8 2.9 1810 chr3L 11087067 intron JIL-1 - chr3L 11087972 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-280 679 chr3L 11157735 11157761 chr3L 11157853 11157880 11 118 0.5 2.5 1.5 4.4 145 chr3L 11157735 intron CG32082 + chr3L 11157808 intron CG32082 + chr3L 11157880 intron CG32082 + chr3L_11_11155001 chr3L_11155001 RAL-280 680 chr3L 11264463 11264486 chr3L 11271415 11271438 17.6 4 6951 1.5 1.5 1.5 1.6 6975 chr3L 11264463 intergenic not near genes chr3L 11267950 intergenic not near genes chr3L 11271438 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-280 681 chr3L 11329689 11329726 chr3L 11332894 11332930 jockey 5 3205 5.5 1.5 3.5 1.1 3241 chr3L 11329689 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332930 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-280 682 chr3L 11383971 11383996 chr3L 11384046 11384074 6 68 2.5 3.0 2.8 1.6 103 chr3L 11383971 3` UTR CR42755 - chr3L 11384022 3` UTR CR42755 - chr3L 11384074 3` UTR CR42755 - chr3L_6_11380001 chr3L_11380001 RAL-280 683 chr3L 11453641 11453663 chr3L 11453719 11453724 5 70 1.5 2.5 2.0 1.7 83 chr3L 11453641 intergenic not near genes chr3L 11453682 intergenic not near genes chr3L 11453724 intergenic not near genes chr3L_5_11450001 chr3L_11450001 RAL-280 684 chr3L 11564793 11564811 chr3L 11572415 11572436 412 5 7623 3.5 5.0 4.2 1.0 7643 chr3L 11564793 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-280 685 chr3L 11678105 11678119 chr3L 11678192 11678206 5 86 1.5 1.0 1.2 2.3 101 chr3L 11678105 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678206 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-280 686 chr3L 11723080 11723115 chr3L 11727875 11727905 Doc 5 4794 2.5 1.5 2.0 1.7 4825 chr3L 11723080 3` UTR Bmcp + chr3L 11725492 intron Bmcp + chr3L 11727905 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-280 687 chr3L 11740131 11740153 chr3L 11740229 11740251 6 98 6.0 6.0 6.0 0.9 120 chr3L 11740131 intron CG6024 - chr3L 11740191 intron CG6024 - chr3L 11740251 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-280 688 chr3L 11744011 11744039 chr3L 11744119 11744147 10 107 6.5 0.0 3.2 2.4 136 chr3L 11744011 exon CG6024 - chr3L 11744079 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_10_11740001 chr3L_11740001 RAL-280 689 chr3L 11750600 11750620 chr3L 11750746 11750766 5 144 0.5 6.0 3.2 1.2 166 chr3L 11750600 intron CG6024 - chr3L 11750683 intron CG6024 - chr3L 11750766 intron CG6024 - chr3L_5_11750001 chr3L_11750001 RAL-280 690 chr3L 11755189 11755196 chr3L 11755268 11755275 5 79 8.0 3.5 5.8 0.7 86 chr3L 11755189 intron CG6024 - chr3L 11755232 intron CG6024 - chr3L 11755275 intron CG6024 - chr3L_5_11755001 chr3L_11755001 RAL-280 691 chr3L 11771000 11771018 chr3L 11771086 11771104 5 86 3.5 3.5 3.5 1.1 104 chr3L 11771000 exon Muc68D - chr3L 11771052 exon Muc68D - chr3L 11771104 exon Muc68D - chr3L_5_11770001 chr3L_11770001 RAL-280 692 chr3L 802565 802566 chr3L 11777678 11777678 11 10975112 20.5 9.0 14.8 0.7 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_11_6290001 chr3L_6290001 RAL-280 693 chr3L 11864555 11864582 chr3L 11865850 11865877 pogo 5 1294 3.0 2.5 2.8 1.3 1322 chr3L 11864555 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-280 694 chr3L 11936603 11936626 chr3L 11936682 11936706 5 80 0.5 1.5 1.0 2.5 103 chr3L 11936603 intron CG44837 - chr3L 11936654 intron CG44837 - chr3L 11936706 intron CG44837 - chr3L_5_11935001 chr3L_11935001 RAL-280 695 chr3L 11936627 11936633 chr3L 11936680 11936712 5 66 0.5 1.5 1.0 2.5 85 chr3L 11936627 intron CG44837 - chr3L 11936670 intron CG44837 - chr3L 11936712 intron CG44837 - chr3L_5_11935001 chr3L_11935001 RAL-280 696 chr3L 11938884 11938903 chr3L 11938957 11938992 5 81 3.0 2.0 2.5 1.4 108 chr3L 11938884 intergenic CG44837 - chr3L 11938938 intergenic CG44837 - chr3L 11938992 intergenic CG44837 - chr3L_5_11935001 chr3L_11935001 RAL-280 697 chr3L 11943500 11943521 chr3L 11943601 11943622 6 101 0.0 1.5 0.8 3.3 122 chr3L 11943500 intergenic Rpt4R +,CG5883 - chr3L 11943561 intergenic Rpt4R +,CG5883 - chr3L 11943622 intergenic CG5883 -,Rpt4R + chr3L_6_11940001 chr3L_11940001 RAL-280 698 chr3L 11961210 11961223 chr3L 11961298 11961310 4 92 3.5 2.5 3.0 1.0 100 chr3L 11961210 exon prc - chr3L 11961260 exon prc - chr3L 11961310 exon prc - chr3L_4_11960001 chr3L_11960001 RAL-280 699 chr3L 11984566 11984596 chr3L 11984657 11984678 10 89 3.0 0.0 1.5 4.0 112 chr3L 11984566 intergenic CG6938 + chr3L 11984622 intergenic CG6938 + chr3L 11984678 intergenic CG6938 + chr3L_10_11980001 chr3L_11980001 RAL-280 700 chr3L 12046109 12046115 chr3L 12046183 12046193 4 77 1.0 2.5 1.8 1.4 84 chr3L 12046109 intron rols - chr3L 12046151 intron rols - chr3L 12046193 intron rols - chr3L_4_12045001 chr3L_12045001 RAL-280 701 chr3L 12052705 12052735 chr3L 12052794 12052824 7 89 3.5 1.0 2.2 2.2 119 chr3L 12052705 intron rols - chr3L 12052764 intron rols - chr3L 12052824 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-280 702 chr3L 12089082 12089109 chr3L 12089162 12089189 4 80 0.5 2.5 1.5 1.6 107 chr3L 12089082 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089189 3` UTR CG17154 + chr3L_4_12085001 chr3L_12085001 RAL-280 703 chr3L 12092409 12092421 chr3L 12092486 12092498 4 77 0.0 5.0 2.5 1.1 89 chr3L 12092409 intergenic not near genes chr3L 12092454 intergenic not near genes chr3L 12092498 intergenic not near genes chr3L_4_12090001 chr3L_12090001 RAL-280 704 chr3L 12105967 12105993 chr3L 12106054 12106080 5 87 2.0 4.0 3.0 1.2 113 chr3L 12105967 intergenic not near genes chr3L 12106024 intergenic not near genes chr3L 12106080 intergenic not near genes chr3L_5_12105001 chr3L_12105001 RAL-280 705 chr3L 12158775 12158808 chr3L 12160245 12160278 18 1471 44.0 31.0 37.5 0.5 1503 chr3L 12158775 intron CG9760 - chr3L 12159526 exon CG9760 - chr3L 12160278 intron CG9760 - chr3L_18_12155001 chr3L_12155001 RAL-280 706 chr3L 12156436 12156460 chr3L 12160321 12160345 5 3887 11.0 20.0 15.5 0.3 3909 chr3L 12156436 3` UTR Nrx-IV + chr3L 12158390 intron CG9760 - chr3L 12160345 intron CG9760 - chr3L_5_12155001 chr3L_12155001 RAL-280 707 chr3L 12353927 12353950 chr3L 12354009 12354039 9 88 1.5 2.5 2.0 3.0 112 chr3L 12353927 intergenic not near genes chr3L 12353983 intergenic not near genes chr3L 12354039 intergenic not near genes chr3L_9_12350001 chr3L_12350001 RAL-280 708 chr3L 12381541 12381553 chr3L 12381619 12381631 5 78 0.5 0.0 0.2 4.2 90 chr3L 12381541 intron Ncc69 - chr3L 12381586 intron Ncc69 - chr3L 12381631 intron Ncc69 - chr3L_5_12380001 chr3L_12380001 RAL-280 709 chr3L 12460316 12460342 chr3L 12460393 12460419 6 77 0.0 0.0 0.0 6.0 103 chr3L 12460316 intergenic not near genes chr3L 12460368 intergenic not near genes chr3L 12460419 intergenic not near genes chr3L_6_12460001 chr3L_12460001 RAL-280 710 chr3L 12506979 12507004 chr3L 12507058 12507083 8 79 0.5 5.5 3.0 2.0 104 chr3L 12506979 intron CG10654 - chr3L 12507031 intron CG10654 - chr3L 12507083 intron CG10654 - chr3L_8_12505001 chr3L_12505001 RAL-280 711 chr3L 12578050 12578072 chr3L 12578138 12578160 4 88 1.0 0.0 0.5 2.7 110 chr3L 12578050 intergenic not near genes chr3L 12578105 intergenic not near genes chr3L 12578160 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-280 712 chr3L 12647954 12647978 chr3L 12648030 12648054 5 75 1.0 1.5 1.2 2.3 100 chr3L 12647954 5` UTR CR32111 + chr3L 12648004 5` UTR CR32111 + chr3L 12648054 5` UTR CR32111 + chr3L_5_12645001 chr3L_12645001 RAL-280 713 chr3L 12666938 12666955 chr3L 12667050 12667067 6 112 0.0 1.0 0.5 4.0 129 chr3L 12666938 intergenic not near genes chr3L 12667002 intergenic not near genes chr3L 12667067 intergenic not near genes chr3L_6_12665001 chr3L_12665001 RAL-280 714 chr3L 12788417 12788436 chr3L 12788537 12788556 4 120 0.5 1.5 1.0 2.0 139 chr3L 12788417 intron Atg1 - chr3L 12788486 intron Atg1 - chr3L 12788556 exon Atg1 - chr3L_4_12785001 chr3L_12785001 RAL-280 715 chr3L 12874927 12874959 chr3L 12877219 12877251 jockey 4 2291 2.5 0.5 1.5 1.6 2324 chr3L 12874927 intergenic not near genes chr3L 12876089 intergenic not near genes chr3L 12877251 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-280 716 chr3L 12894803 12894818 chr3L 12894881 12894892 7 76 2.5 7.5 5.0 1.2 89 chr3L 12894803 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894892 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-280 717 chr3L 12896234 12896257 chr3L 12896312 12896326 4 76 4.5 1.5 3.0 1.0 92 chr3L 12896234 intergenic not near genes chr3L 12896280 intergenic not near genes chr3L 12896326 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-280 718 chr3L 12919275 12919284 chr3L 12924748 12924757 Rt1c 4 5473 9.5 1.5 5.5 0.6 5482 chr3L 12919275 intergenic not near genes chr3L 12922016 intergenic not near genes chr3L 12924757 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-280 719 chr3L 12919288 12919303 chr3L 12924746 12924775 Rt1c 4 5469 5.5 1.5 3.5 0.9 5487 chr3L 12919288 intergenic not near genes chr3L 12922032 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-280 720 chr3L 12957798 12957815 chr3L 12962280 12962295 copia 5 4482 2.0 3.5 2.8 1.3 4497 chr3L 12957798 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962295 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-280 721 chr3L 13452522 13452674 chr3L 13452657 13452762 6 119 0.0 0.0 0.0 6.0 240 chr3L 13452522 intron CG10738 + chr3L 13452642 intron CG10738 + chr3L 13452762 intron CG10738 + chr3L_6_13450001 chr3L_13450001 RAL-280 722 chr3L 13525155 13525189 chr3L 13532951 13532985 roo 8 7795 2.0 5.5 3.8 1.7 7830 chr3L 13525155 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-280 723 chr3L 13572362 13572369 chr3L 13572535 13572542 4 173 12.5 6.5 9.5 0.4 180 chr3L 13572362 intron bru-3 - chr3L 13572452 intron bru-3 - chr3L 13572542 intron bru-3 - chr3L_4_13570001 chr3L_13570001 RAL-280 724 chr3L 13572374 13572391 chr3L 13572534 13572548 6 167 6.0 6.5 6.2 0.8 174 chr3L 13572374 intron bru-3 - chr3L 13572461 intron bru-3 - chr3L 13572548 intron bru-3 - chr3L_6_13570001 chr3L_13570001 RAL-280 725 chr3L 13648886 13648922 chr3L 13648976 13649012 4 85 2.5 4.5 3.5 0.9 126 chr3L 13648886 intron bru-3 - chr3L 13648949 intron bru-3 - chr3L 13649012 intron bru-3 - chr3L_4_13645001 chr3L_13645001 RAL-280 726 chr3L 13677533 13677547 chr3L 13677610 13677624 4 77 0.0 1.0 0.5 2.7 91 chr3L 13677533 intron bru-3 - chr3L 13677578 intron bru-3 - chr3L 13677624 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-280 727 chr3L 13774641 13774666 chr3L 13774727 13774751 5 85 3.0 4.0 3.5 1.1 110 chr3L 13774641 intron bru-3 - chr3L 13774696 intron bru-3 - chr3L 13774751 intron bru-3 - chr3L_5_13770001 chr3L_13770001 RAL-280 728 chr3L 13833977 13834008 chr3L 13834089 13834122 5 113 1.0 1.0 1.0 2.5 145 chr3L 13833977 intergenic not near genes chr3L 13834050 intergenic not near genes chr3L 13834122 intergenic not near genes chr3L_5_13830001 chr3L_13830001 RAL-280 729 chr3L 13919715 13919747 chr3L 13919798 13919830 5 83 2.0 1.5 1.8 1.8 115 chr3L 13919715 intron Rgl - chr3L 13919772 intron Rgl - chr3L 13919830 intron Rgl - chr3L_5_13915001 chr3L_13915001 RAL-280 730 chr3L 14245567 14245592 chr3L 14245661 14245686 1360 12 94 2.5 1.5 2.0 4.0 119 chr3L 14245567 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245686 3` UTR CR44561 - chr3L_12_14245001 chr3L_14245001 RAL-280 731 chr3L 14295997 14296015 chr3L 14296483 14296501 roo 5 486 1.5 4.0 2.8 1.3 504 chr3L 14295997 intron fz + chr3L 14296249 intron fz + chr3L 14296501 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-280 732 chr3L 14302996 14303009 chr3L 14303081 14303094 4 85 1.5 1.0 1.2 1.8 98 chr3L 14302996 intron fz + chr3L 14303045 intron fz + chr3L 14303094 intron fz + chr3L_4_14300001 chr3L_14300001 RAL-280 733 chr3L 14399177 14399188 chr3L 14399266 14399277 5 89 1.5 0.0 0.8 2.8 100 chr3L 14399177 intergenic not near genes chr3L 14399227 intergenic not near genes chr3L 14399277 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-280 734 chr3L 14455365 14455372 chr3L 14455446 14455451 6 80 2.0 0.0 1.0 3.0 86 chr3L 14455365 intron bbg - chr3L 14455408 intron bbg - chr3L 14455451 intron bbg - chr3L_6_14455001 chr3L_14455001 RAL-280 735 chr3L 14468452 14468476 chr3L 14473658 14473682 copia 4 5206 2.0 2.5 2.2 1.2 5230 chr3L 14468452 intron bbg - chr3L 14471067 intron bbg - chr3L 14473682 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-280 736 chr3L 14731228 14731242 chr3L 14731416 14731428 5 187 1.0 0.5 0.8 2.8 200 chr3L 14731228 intron ome + chr3L 14731328 intron ome + chr3L 14731428 intron ome + chr3L_5_14730001 chr3L_14730001 RAL-280 737 chr3L 14759004 14759020 chr3L 14759099 14759114 7 96 4.0 2.5 3.2 1.7 110 chr3L 14759004 intron Trl - chr3L 14759059 intron Trl - chr3L 14759114 intron Trl - chr3L_7_14755001 chr3L_14755001 RAL-280 738 chr3L 15085051 15085082 chr3L 15086216 15086242 1360 10 1164 0.5 1.5 1.0 5.0 1191 chr3L 15085051 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086242 intron cp309 - chr3L_10_15085001 chr3L_15085001 RAL-280 739 chr3L 15358361 15358382 chr3L 15358492 15358513 7 131 1.0 0.5 0.8 3.9 152 chr3L 15358361 intergenic not near genes chr3L 15358437 intergenic not near genes chr3L 15358513 intergenic not near genes chr3L_7_15355001 chr3L_15355001 RAL-280 740 chr3L 15384967 15384977 chr3L 15385085 15385105 4 125 1.0 1.5 1.2 1.8 138 chr3L 15384967 intergenic not near genes chr3L 15385036 intergenic not near genes chr3L 15385105 intergenic not near genes chr3L_4_15385001 chr3L_15385001 RAL-280 741 chr3L 15466040 15466129 chr3L 15466121 15466225 4 92 0.0 0.0 0.0 4.0 185 chr3L 15466040 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466225 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-280 742 chr3L 15541622 15541649 chr3L 15541713 15541740 4 91 2.0 0.5 1.2 1.8 118 chr3L 15541622 intron CrebA + chr3L 15541681 intron CrebA + chr3L 15541740 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-280 743 chr3L 15756882 15756911 chr3L 15756961 15756985 9 81 3.0 1.0 2.0 3.0 103 chr3L 15756882 intergenic not near genes chr3L 15756934 intergenic not near genes chr3L 15756985 intergenic not near genes chr3L_9_15755001 chr3L_15755001 RAL-280 744 chr3L 15836036 15836068 chr3L 15836173 15836205 9 137 39.0 34.5 36.8 0.2 169 chr3L 15836036 3` UTR CG15715 - chr3L 15836120 3` UTR CG15715 - chr3L 15836205 exon CG15715 - chr3L_9_15835001 chr3L_15835001 RAL-280 745 chr3L 16184105 16184136 chr3L 16188924 16188947 X-element 8 4818 1.5 1.0 1.2 3.6 4842 chr3L 16184105 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188947 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-280 746 chr3L 16220504 16220518 chr3L 16220589 16220602 5 85 0.5 1.5 1.0 2.5 98 chr3L 16220504 intergenic not near genes chr3L 16220553 intergenic not near genes chr3L 16220602 intergenic not near genes chr3L_5_16220001 chr3L_16220001 RAL-280 747 chr3L 16272235 16272252 chr3L 16272503 16272520 6 267 1.5 4.5 3.0 1.5 285 chr3L 16272235 intergenic CG13067 + chr3L 16272378 intergenic CG13067 + chr3L 16272520 intergenic CG13066 + chr3L_6_16270001 chr3L_16270001 RAL-280 748 chr3L 16322831 16322852 chr3L 16322921 16322938 5 89 2.0 5.5 3.8 1.0 107 chr3L 16322831 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322938 intergenic not near genes chr3L_5_16320001 chr3L_16320001 RAL-280 749 chr3L 16437066 16437103 chr3L 16437145 16437182 6 79 2.0 1.5 1.8 2.1 116 chr3L 16437066 intron,intron CG33158 +,dsx-c73A - chr3L 16437124 intron,intron CG33158 +,dsx-c73A - chr3L 16437182 intron,intron CG33158 +,dsx-c73A - chr3L_6_16435001 chr3L_16435001 RAL-280 750 chr3L 16443853 16443875 chr3L 16446193 16446215 Doc 7 2340 1.5 1.5 1.5 2.8 2362 chr3L 16443853 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-280 751 chr3L 16493985 16494005 chr3L 16494500 16494521 jockey 7 516 4.5 3.0 3.8 1.5 536 chr3L 16493985 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494253 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494521 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-280 752 chr3L 16498533 16498546 chr3L 16498641 16498654 4 108 4.0 0.0 2.0 1.3 121 chr3L 16498533 intron,exon CG43373 -,st + chr3L 16498594 intron,intron CG43373 -,st + chr3L 16498654 intron,intron CG43373 -,st + chr3L_4_16495001 chr3L_16495001 RAL-280 753 chr3L 16561108 16561141 chr3L 16561186 16561219 13 76 2.0 2.5 2.2 4.1 111 chr3L 16561108 intergenic not near genes chr3L 16561164 intergenic not near genes chr3L 16561219 intergenic not near genes chr3L_13_16560001 chr3L_16560001 RAL-280 754 chr3L 16659115 16659134 chr3L 16659193 16659211 7 77 2.5 8.0 5.2 1.1 96 chr3L 16659115 intron Baldspot - chr3L 16659163 intron Baldspot - chr3L 16659211 intron Baldspot - chr3L_7_16655001 chr3L_16655001 RAL-280 755 chr3L 16717462 16717480 chr3L 16717546 16717564 4 84 3.0 3.0 3.0 1.0 102 chr3L 16717462 intron Dab + chr3L 16717513 intron Dab + chr3L 16717564 intron Dab + chr3L_4_16715001 chr3L_16715001 RAL-280 756 chr3L 16749209 16749234 chr3L 16749285 16749310 4 76 2.5 2.5 2.5 1.1 101 chr3L 16749209 intergenic not near genes chr3L 16749260 intergenic not near genes chr3L 16749310 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-280 757 chr3L 16861035 16861053 chr3L 16861135 16861155 4 101 4.5 3.0 3.8 0.8 120 chr3L 16861035 intron,exon Rh4 -,CG13029 + chr3L 16861095 intron,intron Rh4 -,CG13029 + chr3L 16861155 intron,exon Rh4 -,CG13029 + chr3L_4_16860001 chr3L_16860001 RAL-280 758 chr3L 16945733 16945759 chr3L 16954879 16954912 roo 11 9146 7.5 1.5 4.5 2.0 9179 chr3L 16945733 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-280 759 chr3L 17085014 17085034 chr3L 17094158 17094183 roo 5 9148 4.5 3.5 4.0 1.0 9169 chr3L 17085014 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_5_17085001 chr3L_17085001 RAL-280 760 chr3L 17113877 17113885 chr3L 17113969 17113979 6 94 6.5 4.0 5.2 1.0 102 chr3L 17113877 intron Rbp6 - chr3L 17113928 intron Rbp6 - chr3L 17113979 intron Rbp6 - chr3L_6_17110001 chr3L_17110001 RAL-280 761 chr3L 17120654 17120684 chr3L 17120730 17120760 7 76 0.5 0.0 0.2 5.8 106 chr3L 17120654 intron Rbp6 - chr3L 17120707 intron Rbp6 - chr3L 17120760 intron Rbp6 - chr3L_7_17120001 chr3L_17120001 RAL-280 762 chr3L 17255229 17255233 chr3L 17255319 17255324 4 91 2.5 0.5 1.5 1.6 95 chr3L 17255229 intron CR43870 + chr3L 17255276 intron CR43870 + chr3L 17255324 intron CR43870 + chr3L_4_17255001 chr3L_17255001 RAL-280 763 chr3L 17367434 17367459 chr3L 17367528 17367553 6 94 1.5 0.0 0.8 3.3 119 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367553 intergenic CR45688 +,Cad74A - chr3L_6_17365001 chr3L_17365001 RAL-280 764 chr3L 17412647 17412673 chr3L 17412733 17412760 5 87 5.5 1.5 3.5 1.1 113 chr3L 17412647 intron blot - chr3L 17412704 intron blot - chr3L 17412760 intron blot - chr3L_5_17410001 chr3L_17410001 RAL-280 765 chr3L 17510751 17510765 chr3L 17510834 17510849 4 84 3.0 7.0 5.0 0.7 98 chr3L 17510751 exon Oatp74D + chr3L 17510800 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-280 766 chr3L 17516981 17517008 chr3L 17524539 17524566 412 4 7556 2.5 2.5 2.5 1.1 7585 chr3L 17516981 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524566 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-280 767 chr3L 17535826 17535844 chr3L 17535940 17535957 7 111 2.0 6.5 4.2 1.3 131 chr3L 17535826 intron Nedd4 + chr3L 17535892 intron Nedd4 + chr3L 17535957 intron Nedd4 + chr3L_7_17535001 chr3L_17535001 RAL-280 768 chr3L 17580589 17580611 chr3L 17580765 17580787 9 174 1.0 0.0 0.5 6.0 198 chr3L 17580589 intron Eip74EF - chr3L 17580688 intron Eip74EF - chr3L 17580787 intron Eip74EF - chr3L_9_17580001 chr3L_17580001 RAL-280 769 chr3L 17586972 17587001 chr3L 17587106 17587135 5 134 0.0 1.5 0.8 2.8 163 chr3L 17586972 intron Eip74EF - chr3L 17587054 intron Eip74EF - chr3L 17587135 intron Eip74EF - chr3L_5_17585001 chr3L_17585001 RAL-280 770 chr3L 17769073 17769105 chr3L 17769189 17769221 6 116 2.5 0.5 1.5 2.4 148 chr3L 17769073 intergenic not near genes chr3L 17769147 intergenic not near genes chr3L 17769221 intergenic not near genes chr3L_6_17765001 chr3L_17765001 RAL-280 771 chr3L 17789841 17789870 chr3L 17789917 17789946 5 76 0.0 0.0 0.0 5.0 105 chr3L 17789841 intergenic not near genes chr3L 17789894 intergenic not near genes chr3L 17789946 intergenic not near genes chr3L_5_17785001 chr3L_17785001 RAL-280 772 chr3L 17976155 17976166 chr3L 17976228 17976241 6 75 2.5 1.0 1.8 2.1 86 chr3L 17976155 intron Eip75B - chr3L 17976198 intron Eip75B - chr3L 17976241 intron Eip75B - chr3L_6_17975001 chr3L_17975001 RAL-280 773 chr3L 18006226 18006253 chr3L 18006350 18006377 7 122 1.5 3.0 2.2 2.2 151 chr3L 18006226 intron Eip75B - chr3L 18006302 intron Eip75B - chr3L 18006377 intron Eip75B - chr3L_7_18005001 chr3L_18005001 RAL-280 774 chr3L 18106253 18106285 chr3L 18106371 18106404 5 118 2.5 0.0 1.2 2.3 151 chr3L 18106253 intergenic CG13698 -,mRpS26 + chr3L 18106328 intergenic CG13698 -,mRpS26 + chr3L 18106404 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-280 775 chr3L 18376086 18376104 chr3L 18376174 18376193 5 89 0.0 0.5 0.2 4.2 107 chr3L 18376086 intergenic not near genes chr3L 18376140 intergenic not near genes chr3L 18376193 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-280 776 chr3L 9013689 9013695 chr3L 18417066 18417066 9 9403375 23.5 21.0 22.2 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_9_13715001 chr3L_13715001 RAL-280 777 chr3L 18464492 18464514 chr3L 18464572 18464600 4 84 0.5 3.5 2.0 1.3 108 chr3L 18464492 intergenic not near genes chr3L 18464546 intergenic not near genes chr3L 18464600 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-280 778 chr3L 18484676 18484694 chr3L 18488647 18488664 4 3972 17.0 25.0 21.0 0.2 3988 chr3L 18484676 intergenic AstC-R2 - chr3L 18486670 3` UTR AstC-R2 - chr3L 18488664 exon AstC-R2 - chr3L_4_18485001 chr3L_18485001 RAL-280 779 chr3L 18546701 18546724 chr3L 18546795 18546818 9 94 1.5 1.0 1.2 4.1 117 chr3L 18546701 intergenic not near genes chr3L 18546760 intergenic not near genes chr3L 18546818 intergenic not near genes chr3L_9_18545001 chr3L_18545001 RAL-280 780 chr3L 18721773 18721804 chr3L 18721862 18721895 7 90 1.5 0.0 0.8 3.9 122 chr3L 18721773 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_7_18720001 chr3L_18720001 RAL-280 781 chr3L 18730377 18730386 chr3L 18730556 18730565 4 180 3.5 1.0 2.2 1.2 188 chr3L 18730377 intergenic not near genes chr3L 18730471 intergenic not near genes chr3L 18730565 intergenic not near genes chr3L_4_18730001 chr3L_18730001 RAL-280 782 chr3L 18772407 18772438 chr3L 18781088 18781119 roo 9 8680 0.5 2.5 1.5 3.6 8712 chr3L 18772407 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781119 intron ftz-f1 - chr3L_9_18775001 chr3L_18775001 RAL-280 783 chr3L 18839736 18839763 chr3L 18839819 18839846 5 83 1.5 2.0 1.8 1.8 110 chr3L 18839736 intron Indy - chr3L 18839791 intron Indy - chr3L 18839846 intron Indy - chr3L_5_18835001 chr3L_18835001 RAL-280 784 chr3L 18861767 18861791 chr3L 18861860 18861865 6 90 1.0 4.5 2.8 1.6 98 chr3L 18861767 intergenic not near genes chr3L 18861816 intergenic not near genes chr3L 18861865 intergenic not near genes chr3L_6_18860001 chr3L_18860001 RAL-280 785 chr3L 18929958 18929981 chr3L 18930042 18930065 8 84 1.5 1.0 1.2 3.6 107 chr3L 18929958 intron CG32204 - chr3L 18930012 intron CG32204 - chr3L 18930065 exon CG32204 - chr3L_8_18930001 chr3L_18930001 RAL-280 786 chr3L 18972392 18972424 chr3L 18972468 18972500 11 71 7.0 7.0 7.0 1.4 108 chr3L 18972392 intergenic not near genes chr3L 18972446 intergenic not near genes chr3L 18972500 intergenic not near genes chr3L_11_18970001 chr3L_18970001 RAL-280 787 chr3L 19012869 19012888 chr3L 19012954 19012968 11 82 3.0 4.0 3.5 2.4 99 chr3L 19012869 intron nkd - chr3L 19012918 intron nkd - chr3L 19012968 intron nkd - chr3L_11_19010001 chr3L_19010001 RAL-280 788 chr3L 19115642 19115671 chr3L 19115814 19115847 BS 4 176 4.0 1.0 2.5 1.1 205 chr3L 19115642 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115847 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-280 789 chr3L 19117041 19117076 chr3L 19124487 19124523 mdg1 13 7445 1.5 3.0 2.2 4.1 7482 chr3L 19117041 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_13_19120001 chr3L_19120001 RAL-280 790 chr3L 19138558 19138588 chr3L 19138639 19138669 10 78 2.5 5.0 3.8 2.1 111 chr3L 19138558 intron CG14082 - chr3L 19138614 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_10_19135001 chr3L_19135001 RAL-280 791 chr3L 19166065 19166088 chr3L 19166157 19166164 11 88 4.5 2.0 3.2 2.6 99 chr3L 19166065 intron fz2 - chr3L 19166114 intron fz2 - chr3L 19166164 intron fz2 - chr3L_11_19165001 chr3L_19165001 RAL-280 792 chr3L 19182387 19182416 chr3L 19182468 19182497 6 81 0.0 1.5 0.8 3.3 110 chr3L 19182387 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182497 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-280 793 chr3L 19208064 19208086 chr3L 19209438 19209460 Doc 6 1373 1.5 4.5 3.0 1.5 1396 chr3L 19208064 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209460 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-280 794 chr3L 19390730 19390760 chr3L 19390828 19390857 7 98 1.0 3.5 2.2 2.2 127 chr3L 19390730 intron CG32206 - chr3L 19390794 intron CG32206 - chr3L 19390857 intron CG32206 - chr3L_7_19390001 chr3L_19390001 RAL-280 795 chr3L 19848503 19848534 chr3L 19857692 19857725 roo 4 9190 1.5 0.0 0.8 2.2 9222 chr3L 19848503 intron Papss + chr3L 19853114 intron Papss + chr3L 19857725 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-280 796 chr3L 19861820 19861850 chr3L 19863608 19863618 S-element 6 1785 3.0 2.0 2.5 1.7 1798 chr3L 19861820 5` UTR CR45433 + chr3L 19862719 intergenic not near genes chr3L 19863618 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-280 797 chr3L 20143080 20143109 chr3L 20143160 20143189 8 80 3.5 0.5 2.0 2.7 109 chr3L 20143080 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143189 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-280 798 chr3L 20148289 20148316 chr3L 20148378 20148406 6 89 2.0 2.0 2.0 2.0 117 chr3L 20148289 intergenic not near genes chr3L 20148348 intergenic not near genes chr3L 20148406 intergenic not near genes chr3L_6_20145001 chr3L_20145001 RAL-280 799 chr3L 20251141 20251169 chr3L 20251227 20251256 5 86 3.0 3.0 3.0 1.2 115 chr3L 20251141 intron rdgC + chr3L 20251198 intron rdgC + chr3L 20251256 intron rdgC + chr3L_5_20250001 chr3L_20250001 RAL-280 800 chr3L 20257335 20257359 chr3L 20258455 20258479 pogo 7 1120 0.5 3.5 2.0 2.3 1144 chr3L 20257335 intron rdgC + chr3L 20257907 intron rdgC + chr3L 20258479 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-280 801 chr3L 20354376 20354402 chr3L 20354601 20354626 7 225 4.0 1.5 2.8 1.8 250 chr3L 20354376 5` UTR CG5618 + chr3L 20354501 intron CG5618 + chr3L 20354626 intron CG5618 + chr3L_7_20350001 chr3L_20350001 RAL-280 802 chr3L 20386938 20386967 chr3L 20387040 20387069 5 102 0.5 1.5 1.0 2.5 131 chr3L 20386938 intron fbl + chr3L 20387004 intron fbl + chr3L 20387069 intron fbl + chr3L_5_20385001 chr3L_20385001 RAL-280 803 chr3L 20451275 20451306 chr3L 20451516 20451547 4 241 1.0 2.0 1.5 1.6 272 chr3L 20451275 intron CG5199 - chr3L 20451411 intron CG5199 - chr3L 20451547 intron CG5199 - chr3L_4_20450001 chr3L_20450001 RAL-280 804 chr3L 20866507 20866533 chr3L 20866591 20866617 5 84 2.5 0.5 1.5 2.0 110 chr3L 20866507 intron CG32432 - chr3L 20866562 intron CG32432 - chr3L 20866617 intron CG32432 - chr3L_5_20865001 chr3L_20865001 RAL-280 805 chr3L 20913753 20913782 chr3L 20913835 20913864 9 81 3.0 5.5 4.2 1.7 111 chr3L 20913753 intergenic CR43930 - chr3L 20913808 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_9_20910001 chr3L_20910001 RAL-280 806 chr3L 20986772 20986788 chr3L 20986835 20986862 6 72 2.5 1.5 2.0 2.0 90 chr3L 20986772 intergenic not near genes chr3L 20986817 intergenic not near genes chr3L 20986862 intergenic not near genes chr3L_6_20985001 chr3L_20985001 RAL-280 807 chr3L 21014924 21014930 chr3L 21023404 21023405 Tirant 4 8479 5.0 6.0 5.5 0.6 8481 chr3L 21014924 intron skd - chr3L 21019164 intron skd - chr3L 21023405 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-280 808 chr3L 21014934 21014948 chr3L 21023400 21023424 Tirant 8 8473 2.0 5.5 3.8 1.7 8490 chr3L 21014934 intron skd - chr3L 21019179 intron skd - chr3L 21023424 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-280 809 chr3L 21110182 21110201 chr3L 21110436 21110455 6 254 2.0 3.5 2.8 1.6 273 chr3L 21110182 intron ko - chr3L 21110318 intron ko - chr3L 21110455 intron ko - chr3L_6_21110001 chr3L_21110001 RAL-280 810 chr3L 21158597 21158624 chr3L 21158673 21158700 9 76 2.0 2.0 2.0 3.0 103 chr3L 21158597 intron Ac78C - chr3L 21158648 intron Ac78C - chr3L 21158700 intron Ac78C - chr3L_9_21155001 chr3L_21155001 RAL-280 811 chr3L 21306148 21306178 chr3L 21315307 21315337 roo 5 9159 0.5 1.5 1.0 2.5 9189 chr3L 21306148 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315337 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-280 812 chr3L 21401183 21401212 chr3L 21401272 21401300 11 87 6.0 1.5 3.8 2.3 117 chr3L 21401183 intron rgn + chr3L 21401242 intron rgn + chr3L 21401300 intron rgn + chr3L_11_21400001 chr3L_21400001 RAL-280 813 chr3L 21406992 21407020 chr3L 21407071 21407099 7 79 3.5 2.0 2.8 1.8 107 chr3L 21406992 intron rgn + chr3L 21407046 intron rgn + chr3L 21407099 intron rgn + chr3L_7_21405001 chr3L_21405001 RAL-280 814 chr3L 21749323 21749340 chr3L 21754481 21754500 Doc 5 5156 4.0 4.0 4.0 1.0 5177 chr3L 21749323 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754500 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-280 815 chr3L 21761261 21761282 chr3L 21761670 21761691 5 409 2.0 2.0 2.0 1.7 430 chr3L 21761261 5` UTR Syn1 - chr3L 21761476 intron Syn1 - chr3L 21761691 intron Syn1 - chr3L_5_21760001 chr3L_21760001 RAL-280 816 chr3L 21901029 21901045 chr3L 21901121 21901138 6 93 3.5 8.0 5.8 0.9 109 chr3L 21901029 intron mub + chr3L 21901084 intron mub + chr3L 21901138 intron mub + chr3L_6_21900001 chr3L_21900001 RAL-280 817 chr3L 21966485 21966508 chr3L 21966568 21966587 4 81 2.5 7.0 4.8 0.7 102 chr3L 21966485 intron CS-2 + chr3L 21966536 intron CS-2 + chr3L 21966587 intron CS-2 + chr3L_4_21965001 chr3L_21965001 RAL-280 818 chr3L 22033688 22033714 chr3L 22033766 22033792 8 76 2.0 0.5 1.2 3.6 104 chr3L 22033688 intergenic not near genes chr3L 22033740 intergenic not near genes chr3L 22033792 intergenic not near genes chr3L_8_22030001 chr3L_22030001 RAL-280 819 chr3L 22124952 22124971 chr3L 22125108 22125127 6 155 3.0 1.5 2.2 1.9 175 chr3L 22124952 intergenic not near genes chr3L 22125040 intergenic not near genes chr3L 22125127 intergenic not near genes chr3L_6_22125001 chr3L_22125001 RAL-280 820 chr3L 22130504 22130522 chr3L 22130650 22130668 5 146 1.5 2.0 1.8 1.8 164 chr3L 22130504 intergenic not near genes chr3L 22130586 intergenic not near genes chr3L 22130668 intergenic not near genes chr3L_5_22130001 chr3L_22130001 RAL-280 821 chr3L 22170051 22170055 chr3L 22170149 22170155 4 102 3.0 2.5 2.8 1.1 104 chr3L 22170051 intron olf413 + chr3L 22170103 intron olf413 + chr3L 22170155 intron olf413 + chr3L_4_22170001 chr3L_22170001 RAL-280 822 chr3L 22411379 22411399 chr3L 22411446 22411446 6 65 3.5 2.0 2.8 1.6 67 chr3L 22411379 intergenic not near genes chr3L 22411412 intergenic not near genes chr3L 22411446 intergenic not near genes chr3L_6_22410001 chr3L_22410001 RAL-280 823 chr3L 22522704 22522718 chr3L 22522781 22522795 6 74 3.0 2.0 2.5 1.7 91 chr3L 22522704 intergenic not near genes chr3L 22522750 intergenic not near genes chr3L 22522795 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-280 824 chr3L 22555779 22555802 chr3L 22563238 22563272 blood 6 7454 1.5 2.0 1.8 2.1 7493 chr3L 22555779 intergenic not near genes chr3L 22559526 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-280 825 chr3L 22577622 22577649 chr3L 22582410 22582437 Doc 10 4784 2.5 4.5 3.5 2.2 4815 chr3L 22577622 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-280 826 chr3L 22587212 22587238 chr3L 22587309 22587335 4 97 1.5 0.5 1.0 2.0 123 chr3L 22587212 intron CG14459 - chr3L 22587274 intron CG14459 - chr3L 22587335 intron CG14459 - chr3L_4_22585001 chr3L_22585001 RAL-280 827 chr3L 22617190 22617222 chr3L 22624642 22624674 blood 10 7451 1.5 4.5 3.0 2.5 7484 chr3L 22617190 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_10_22620001 chr3L_22620001 RAL-280 828 chr3L 22797332 22797367 chr3L 22797425 22797460 7 93 1.5 1.5 1.5 2.8 128 chr3L 22797332 3` UTR jim - chr3L 22797396 3` UTR jim - chr3L 22797460 3` UTR jim - chr3L_7_22795001 chr3L_22795001 RAL-280 829 chr3L 22853475 22853718 chr3L 22853562 22853804 12 86 3.0 4.0 3.5 2.7 329 chr3L 22853475 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853640 5` UTR CR43426 + chr3L 22853804 5` UTR CR43426 + chr3L_12_22850001 chr3L_22850001 RAL-280 830 chr3L 22936690 22936715 chr3L 22938158 22938185 6 1468 39.5 23.0 31.2 0.2 1495 chr3L 22936690 intergenic not near genes chr3L 22937438 intergenic not near genes chr3L 22938185 intergenic not near genes chr3L_6_22935001 chr3L_22935001 RAL-280 831 chr3L 23008204 23008225 chr3L 23008279 23008301 8 76 2.5 3.5 3.0 2.0 97 chr3L 23008204 intron nrm + chr3L 23008252 intron nrm + chr3L 23008301 intron nrm + chr3L_8_23005001 chr3L_23005001 RAL-280 832 chr3L 23042229 23042253 chr3L 23048982 23049006 gypsy6 9 6750 6.0 4.5 5.2 1.5 6777 chr3L 23042229 intergenic not near genes chr3L 23045618 intergenic not near genes chr3L 23049006 intergenic not near genes chr3L_9_23045001 chr3L_23045001 RAL-280 833 chr3L 23182260 23182295 chr3L 23182374 23182409 9 108 3.0 2.0 2.5 2.6 149 chr3L 23182260 intron CG34031 + chr3L 23182334 intron CG34031 + chr3L 23182409 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-280 834 chr3L 23402313 23402323 chr3L 23402372 23402406 6 78 1.5 2.0 1.8 2.1 93 chr3L 23402313 intergenic not near genes chr3L 23402360 intergenic not near genes chr3L 23402406 intergenic not near genes chr3L_6_23400001 chr3L_23400001 RAL-280 835 chr3L 23875526 23875556 chr3L 23875607 23875635 7 79 3.0 4.0 3.5 1.6 109 chr3L 23875526 intron CG40470 - chr3L 23875580 intron CG40470 - chr3L 23875635 intron CG40470 - chr3L_7_23875001 chr3L_23875001 RAL-280 836 chr3L 24012409 24012426 chr3L 24020750 24020767 roo 4 8339 0.5 1.0 0.8 2.2 8358 chr3L 24012409 intergenic not near genes chr3L 24016588 intergenic not near genes chr3L 24020767 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-280 837 chr3L 24168792 24168819 chr3L 24176117 24176121 ZAM 7 7319 4.0 7.0 5.5 1.1 7329 chr3L 24168792 intron Snap25 + chr3L 24172456 intron Snap25 + chr3L 24176121 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-280 838 chr3L 25354055 25354071 chr3L 25354237 25354253 7 182 2.5 5.0 3.8 1.5 198 chr3L 25354055 intergenic not near genes chr3L 25354154 intergenic not near genes chr3L 25354253 intergenic not near genes chr3L_7_25350001 chr3L_25350001 RAL-280 839 chr3R 2534133 2534161 chr3R 2541700 2541730 8 7564 11.0 14.5 12.8 0.6 7597 chr3R 2534133 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541730 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-280 840 chr3R 4063812 4063829 chr3R 4069092 4069109 4 5278 2.5 9.0 5.8 0.6 5297 chr3R 4063812 intergenic not near genes chr3R 4066460 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-280 841 chr3R 4206080 4206104 chr3R 4211646 4211679 mdg3 4 5573 2.0 0.0 1.0 2.0 5599 chr3R 4206080 intron CG14636 - chr3R 4208880 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-280 842 chr3R 4609558 4609582 chr3R 4610720 4610744 1360 10 1163 2.0 3.5 2.8 2.6 1186 chr3R 4609558 intergenic not near genes chr3R 4610151 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_10_4610001 chr3R_4610001 RAL-280 843 chr3R 4680707 4680740 chr3R 4680785 4680819 6 79 1.0 1.5 1.2 2.7 112 chr3R 4680707 intron CG43427 + chr3R 4680763 intron CG43427 + chr3R 4680819 5` UTR CG43427 + chr3R_6_4680001 chr3R_4680001 RAL-280 844 chr3R 4745597 4745617 chr3R 4745679 4745699 5 82 1.0 0.5 0.8 2.8 102 chr3R 4745597 intron tacc - chr3R 4745648 intron tacc - chr3R 4745699 intron tacc - chr3R_5_4745001 chr3R_4745001 RAL-280 845 chr3R 4753246 4753269 chr3R 4757549 4757569 F-element 8 4301 5.0 7.0 6.0 1.1 4323 chr3R 4753246 intron,intron atms +,CG44098 - chr3R 4755408 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-280 846 chr3R 4769166 4769189 chr3R 4769244 4769267 9 78 2.0 2.0 2.0 3.0 101 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769267 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-280 847 chr3R 4861566 4861593 chr3R 4861646 4861674 11 77 3.5 3.5 3.5 2.4 108 chr3R 4861566 intron opa + chr3R 4861620 intron opa + chr3R 4861674 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-280 848 chr3R 4887477 4887509 chr3R 4894854 4894880 rover 6 7372 3.5 2.0 2.8 1.6 7403 chr3R 4887477 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894880 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-280 849 chr3R 4922343 4922356 chr3R 4922422 4922430 4 78 2.5 1.5 2.0 1.3 87 chr3R 4922343 intron Cdep + chr3R 4922386 intron Cdep + chr3R 4922430 intron Cdep + chr3R_4_4920001 chr3R_4920001 RAL-280 850 chr3R 4966008 4966030 chr3R 4966098 4966122 5 91 3.0 2.0 2.5 1.4 114 chr3R 4966008 intron CG1124 + chr3R 4966065 intron CG1124 + chr3R 4966122 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-280 851 chr3R 5038779 5039064 chr3R 5038861 5039159 5 94 4.0 11.0 7.5 0.6 380 chr3R 5038779 intergenic not near genes chr3R 5038969 intergenic not near genes chr3R 5039159 intergenic not near genes chr3R_5_5035001 chr3R_5035001 RAL-280 852 chr3R 5045862 5045871 chr3R 5052964 5052973 HMS-Beagle 4 7102 3.0 0.5 1.8 1.4 7111 chr3R 5045862 intron CR43635 - chr3R 5049418 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-280 853 chr3R 5158150 5158176 chr3R 5158243 5158268 6 93 2.0 1.5 1.8 2.1 118 chr3R 5158150 intron dpr16 + chr3R 5158209 intron dpr16 + chr3R 5158268 intron dpr16 + chr3R_6_5155001 chr3R_5155001 RAL-280 854 chr3R 5191367 5191397 chr3R 5191647 5191673 9 279 21.0 22.0 21.5 0.4 306 chr3R 5191367 intron cno - chr3R 5191520 intron cno - chr3R 5191673 intron cno - chr3R_9_5190001 chr3R_5190001 RAL-280 855 chr3R 5338399 5338428 chr3R 5343576 5343601 Rt1c 11 5176 3.5 8.0 5.8 1.6 5202 chr3R 5338399 intron mtd - chr3R 5341000 intron mtd - chr3R 5343601 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-280 856 chr3R 5506846 5506868 chr3R 5506978 5506999 6 132 1.0 3.5 2.2 1.9 153 chr3R 5506846 intergenic not near genes chr3R 5506922 intergenic not near genes chr3R 5506999 intergenic not near genes chr3R_6_5505001 chr3R_5505001 RAL-280 857 chr3R 5712085 5712114 chr3R 5712173 5712202 6 88 1.5 1.0 1.2 2.7 117 chr3R 5712085 3` UTR plx + chr3R 5712144 3` UTR plx + chr3R 5712202 3` UTR plx + chr3R_6_5710001 chr3R_5710001 RAL-280 858 chr3R 5746013 5746043 chr3R 5746254 5746284 pogo 9 241 2.5 3.5 3.0 2.2 271 chr3R 5746013 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746284 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 RAL-280 859 chr3R 5772386 5772391 chr3R 5772544 5772549 4 158 2.5 1.5 2.0 1.3 163 chr3R 5772386 intron CG2082 - chr3R 5772468 intron CG2082 - chr3R 5772549 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-280 860 chr3R 5809117 5809124 chr3R 5809358 5809365 pogo 4 241 4.5 3.0 3.8 0.8 248 chr3R 5809117 3` UTR CG11000 + chr3R 5809241 3` UTR CG11000 + chr3R 5809365 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-280 861 chr3R 5809126 5809144 chr3R 5809357 5809385 pogo 4 238 1.5 3.0 2.2 1.2 259 chr3R 5809126 3` UTR CG11000 + chr3R 5809256 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-280 862 chr3R 5822381 5822410 chr3R 5823543 5823577 1360 7 1166 2.5 1.0 1.8 2.5 1196 chr3R 5822381 3` UTR CG2023 - chr3R 5822979 3` UTR CG2023 - chr3R 5823577 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-280 863 chr3R 5895960 5895986 chr3R 5896173 5896200 6 212 1.5 1.5 1.5 2.4 240 chr3R 5895960 intron CG34113 - chr3R 5896080 intron CG34113 - chr3R 5896200 intron CG34113 - chr3R_6_5895001 chr3R_5895001 RAL-280 864 chr3R 5927562 5927582 chr3R 5927802 5927822 pogo 8 239 3.5 2.5 3.0 2.0 260 chr3R 5927562 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927822 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-280 865 chr3R 5943405 5943414 chr3R 5943484 5943493 5 78 4.0 1.5 2.8 1.3 88 chr3R 5943405 intron CG34113 - chr3R 5943449 intron CG34113 - chr3R 5943493 intron CG34113 - chr3R_5_5940001 chr3R_5940001 RAL-280 866 chr3R 6006331 6006346 chr3R 6006416 6006423 4 82 3.5 1.5 2.5 1.1 92 chr3R 6006331 intron Rm62 - chr3R 6006377 intron Rm62 - chr3R 6006423 intron Rm62 - chr3R_4_6005001 chr3R_6005001 RAL-280 867 chr3R 6015961 6015991 chr3R 6024442 6024468 Tirant 8 8480 2.0 1.0 1.5 3.2 8507 chr3R 6015961 intergenic not near genes chr3R 6020214 intergenic not near genes chr3R 6024468 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-280 868 chr3R 6043646 6043671 chr3R 6043868 6043882 9 220 2.5 7.5 5.0 1.5 236 chr3R 6043646 intergenic not near genes chr3R 6043764 intergenic not near genes chr3R 6043882 intergenic not near genes chr3R_9_6040001 chr3R_6040001 RAL-280 869 chr3R 6048443 6048477 chr3R 6048526 6048545 10 80 1.5 1.0 1.2 4.5 102 chr3R 6048443 intergenic not near genes chr3R 6048494 intergenic not near genes chr3R 6048545 intergenic not near genes chr3R_10_6045001 chr3R_6045001 RAL-280 870 chr3R 6121167 6121186 chr3R 6121385 6121404 BS 6 218 0.0 1.0 0.5 4.0 237 chr3R 6121167 intergenic not near genes chr3R 6121286 intergenic not near genes chr3R 6121404 intergenic not near genes chr3R_6_6120001 chr3R_6120001 RAL-280 871 chr3R 6158509 6158538 chr3R 6167092 6167121 Tirant 4 8582 1.0 4.0 2.5 1.1 8612 chr3R 6158509 intergenic not near genes chr3R 6162815 intergenic not near genes chr3R 6167121 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-280 872 chr3R 6330780 6330812 chr3R 6330895 6330927 4 115 2.0 4.0 3.0 1.0 147 chr3R 6330780 exon Osi18 + chr3R 6330854 intron Osi18 + chr3R 6330927 intron Osi18 + chr3R_4_6330001 chr3R_6330001 RAL-280 873 chr3R 6504672 6504700 chr3R 6504782 6504809 9 110 2.0 1.5 1.8 3.2 137 chr3R 6504672 intergenic not near genes chr3R 6504740 intergenic not near genes chr3R 6504809 intergenic not near genes chr3R_9_6500001 chr3R_6500001 RAL-280 874 chr3R 6538205 6538232 chr3R 6538303 6538330 10 95 4.0 2.0 3.0 2.5 125 chr3R 6538205 intron dpr11 - chr3R 6538268 intron dpr11 - chr3R 6538330 exon dpr11 - chr3R_10_6535001 chr3R_6535001 RAL-280 875 chr3R 6737501 6737520 chr3R 6739285 6739307 Doc 4 1782 1.5 1.5 1.5 1.6 1806 chr3R 6737501 intron pb - chr3R 6738404 intron pb - chr3R 6739307 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-280 876 chr3R 6773757 6773785 chr3R 6773837 6773867 9 80 3.0 5.0 4.0 1.8 110 chr3R 6773757 intron CR42721 + chr3R 6773812 intron CR42721 + chr3R 6773867 intron CR42721 + chr3R_9_6770001 chr3R_6770001 RAL-280 877 chr3R 6918070 6918095 chr3R 6918148 6918173 5 78 1.5 1.0 1.2 2.3 103 chr3R 6918070 intron Antp - chr3R 6918122 intron Antp - chr3R 6918173 intron Antp - chr3R_5_6915001 chr3R_6915001 RAL-280 878 chr3R 6990463 6990497 chr3R 6990553 6990587 4 90 0.5 1.0 0.8 2.2 124 chr3R 6990463 intron Antp - chr3R 6990525 intron Antp - chr3R 6990587 intron Antp - chr3R_4_6990001 chr3R_6990001 RAL-280 879 chr3R 6991187 6991207 chr3R 6991251 6991283 5 73 3.5 0.5 2.0 1.7 96 chr3R 6991187 intron Antp - chr3R 6991235 intron Antp - chr3R 6991283 intron Antp - chr3R_5_6990001 chr3R_6990001 RAL-280 880 chr3R 7026865 7026890 chr3R 7026951 7026952 6 82 2.0 1.5 1.8 2.1 87 chr3R 7026865 intergenic not near genes chr3R 7026908 intergenic not near genes chr3R 7026952 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-280 881 chr3R 7092784 7092808 chr3R 7093348 7093372 9 564 1.0 2.0 1.5 3.6 588 chr3R 7092784 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093372 3` UTR CR43685 - chr3R_9_7090001 chr3R_7090001 RAL-280 882 chr3R 7103285 7103307 chr3R 7103361 7103383 8 75 1.0 4.5 2.8 2.1 98 chr3R 7103285 intron Alh - chr3R 7103334 intron Alh - chr3R 7103383 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-280 883 chr3R 7729465 7729486 chr3R 7737402 7737423 Stalker2 6 7938 2.5 3.0 2.8 1.6 7958 chr3R 7729465 intergenic not near genes chr3R 7733444 intergenic not near genes chr3R 7737423 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-280 884 chr3R 7793348 7793374 chr3R 7793426 7793453 4 79 0.5 0.5 0.5 2.7 105 chr3R 7793348 3` UTR CG10086 + chr3R 7793400 3` UTR CG10086 + chr3R 7793453 3` UTR CG10086 + chr3R_4_7790001 chr3R_7790001 RAL-280 885 chr3R 7819872 7819899 chr3R 7822069 7822095 9 2196 7.5 11.0 9.2 0.9 2223 chr3R 7819872 intron CG34384 + chr3R 7820984 intron CG34384 + chr3R 7822095 intron CG34384 + chr3R_9_7820001 chr3R_7820001 RAL-280 886 chr3R 7819930 7819958 chr3R 7822952 7822980 13 3022 15.0 29.5 22.2 0.6 3050 chr3R 7819930 intron CG34384 + chr3R 7821455 intron CG34384 + chr3R 7822980 intron CG34384 + chr3R_13_7820001 chr3R_7820001 RAL-280 887 chr3R 7823943 7823968 chr3R 7824028 7824053 8 84 3.5 0.5 2.0 2.7 110 chr3R 7823943 intron CG34384 + chr3R 7823998 intron CG34384 + chr3R 7824053 intron CG34384 + chr3R_8_7820001 chr3R_7820001 RAL-280 888 chr3R 8049050 8049062 chr3R 8049623 8049636 5 574 7.0 1.0 4.0 1.0 586 chr3R 8049050 intron CG43060 + chr3R 8049343 intron,intron CG43060 +,CG43618 + chr3R 8049636 intron CG43060 + chr3R_5_8045001 chr3R_8045001 RAL-280 889 chr3R 8101767 8101789 chr3R 8104851 8104871 G2 4 3083 3.5 2.5 3.0 1.0 3104 chr3R 8101767 exon CG7900 + chr3R 8103319 intron CG7900 + chr3R 8104871 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-280 890 chr3R 8107386 8107420 chr3R 8107520 8107553 4 134 2.0 0.5 1.2 1.8 167 chr3R 8107386 intron puc + chr3R 8107470 intron puc + chr3R 8107553 intron puc + chr3R_4_8105001 chr3R_8105001 RAL-280 891 chr3R 8133621 8133630 chr3R 8133706 8133715 4 85 3.0 1.5 2.2 1.2 94 chr3R 8133621 intergenic not near genes chr3R 8133668 intergenic not near genes chr3R 8133715 intergenic not near genes chr3R_4_8130001 chr3R_8130001 RAL-280 892 chr3R 8207557 8207588 chr3R 8208401 8208430 F-element 12 843 1.5 2.0 1.8 4.3 873 chr3R 8207557 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_12_8205001 chr3R_8205001 RAL-280 893 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568289 13.0 18.0 15.5 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-280 894 chr3R 8391187 8391213 chr3R 8391267 8391295 4 82 2.5 2.0 2.2 1.2 108 chr3R 8391187 intron CG45263 - chr3R 8391241 intron CG45263 - chr3R 8391295 exon CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-280 895 chr3R 8403013 8403041 chr3R 8412172 8412207 roo 12 9163 5.5 6.5 6.0 1.7 9194 chr3R 8403013 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_12_8405001 chr3R_8405001 RAL-280 896 chr3R 8412425 8412455 chr3R 8412550 8412580 6 123 3.5 2.0 2.8 1.6 155 chr3R 8412425 intron CG45263 - chr3R 8412502 intron CG45263 - chr3R 8412580 intron CG45263 - chr3R_6_8410001 chr3R_8410001 RAL-280 897 chr3R 8541338 8541368 chr3R 8541419 8541447 12 78 4.0 6.5 5.2 1.9 109 chr3R 8541338 intergenic not near genes chr3R 8541392 intergenic not near genes chr3R 8541447 intergenic not near genes chr3R_12_8540001 chr3R_8540001 RAL-280 898 chr3R 8570481 8570511 chr3R 8575117 8575147 HMS-Beagle 9 4636 1.0 5.0 3.0 2.2 4666 chr3R 8570481 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575147 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-280 899 chr3R 8744836 8744853 chr3R 8744916 8744929 5 79 1.5 1.0 1.2 2.3 93 chr3R 8744836 intron CG9801 - chr3R 8744882 intron CG9801 - chr3R 8744929 intron CG9801 - chr3R_5_8740001 chr3R_8740001 RAL-280 900 chr3R 8877174 8877195 chr3R 8877254 8877275 4 80 1.5 2.5 2.0 1.3 101 chr3R 8877174 intron pyd - chr3R 8877224 intron pyd - chr3R 8877275 intron pyd - chr3R_4_8875001 chr3R_8875001 RAL-280 901 chr3R 8894872 8894899 chr3R 8896028 8896055 1360 5 1155 0.0 3.0 1.5 2.0 1183 chr3R 8894872 intron pyd - chr3R 8895464 intron pyd - chr3R 8896055 intron pyd - chr3R_5_8895001 chr3R_8895001 RAL-280 902 chr3R 8917892 8917912 chr3R 8917972 8917992 4 80 1.5 2.0 1.8 1.4 100 chr3R 8917892 intron pyd - chr3R 8917942 intron pyd - chr3R 8917992 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-280 903 chr3R 8973179 8973208 chr3R 8973267 8973295 8 87 0.0 2.0 1.0 4.0 116 chr3R 8973179 intergenic not near genes chr3R 8973237 intergenic not near genes chr3R 8973295 intergenic not near genes chr3R_8_8970001 chr3R_8970001 RAL-280 904 chr3R 9082055 9082069 chr3R 9082149 9082158 9 93 3.0 3.0 3.0 2.2 103 chr3R 9082055 intron pum - chr3R 9082106 intron pum - chr3R 9082158 intron pum - chr3R_9_9080001 chr3R_9080001 RAL-280 905 chr3R 9204249 9204266 chr3R 9204336 9204352 5 85 6.5 2.5 4.5 0.9 103 chr3R 9204249 intron pum - chr3R 9204300 intron pum - chr3R 9204352 intron pum - chr3R_5_9200001 chr3R_9200001 RAL-280 906 chr3R 9204268 9204533 chr3R 9204334 9204632 9 81 5.0 2.0 3.5 2.0 364 chr3R 9204268 intron pum - chr3R 9204450 intron pum - chr3R 9204632 intron pum - chr3R_9_9200001 chr3R_9200001 RAL-280 907 chr3R 9204535 9204549 chr3R 9204635 9204649 4 100 3.0 5.0 4.0 0.8 114 chr3R 9204535 intron pum - chr3R 9204592 intron pum - chr3R 9204649 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-280 908 chr3R 9278780 9278815 chr3R 9284040 9284045 Rt1a 13 5257 0.5 4.0 2.2 4.1 5265 chr3R 9278780 intergenic not near genes chr3R 9281412 intergenic not near genes chr3R 9284045 intergenic not near genes chr3R_13_9280001 chr3R_9280001 RAL-280 909 chr3R 9319577 9319604 chr3R 9320012 9320039 jockey 5 433 2.0 3.0 2.5 1.4 462 chr3R 9319577 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320039 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-280 910 chr3R 9344901 9344931 chr3R 9344984 9345010 5 82 1.0 0.0 0.5 3.3 109 chr3R 9344901 intron CG45050 + chr3R 9344956 intron CG45050 + chr3R 9345010 intron CG45050 + chr3R_5_9340001 chr3R_9340001 RAL-280 911 chr3R 9382818 9382847 chr3R 9382943 9382972 6 125 1.0 2.0 1.5 2.4 154 chr3R 9382818 intron FER - chr3R 9382895 intron FER - chr3R 9382972 intron FER - chr3R_6_9380001 chr3R_9380001 RAL-280 912 chr3R 9620956 9620956 chr3R 21907534 21907536 4 12286580 8.5 18.0 13.2 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-280 913 chr3R 9880168 9880181 chr3R 9883259 9883290 6 3094 17.0 11.0 14.0 0.4 3122 chr3R 9880168 intron Glut4EF + chr3R 9881729 intron Glut4EF + chr3R 9883290 intron Glut4EF + chr3R_6_9880001 chr3R_9880001 RAL-280 914 chr3R 10037662 10037678 chr3R 10037744 10037760 5 81 0.5 0.0 0.2 4.2 98 chr3R 10037662 intron Mical - chr3R 10037711 intron Mical - chr3R 10037760 intron Mical - chr3R_5_10035001 chr3R_10035001 RAL-280 915 chr3R 10151086 10151103 chr3R 10151163 10151180 5 77 5.5 1.5 3.5 1.1 94 chr3R 10151086 intron Invadolysin + chr3R 10151133 intron Invadolysin + chr3R 10151180 intron,exon Invadolysin +,CG34303 - chr3R_5_10150001 chr3R_10150001 RAL-280 916 chr3R 10174121 10174155 chr3R 10174203 10174236 7 81 1.5 4.0 2.8 1.8 115 chr3R 10174121 intron CG12814 - chr3R 10174178 intron CG12814 - chr3R 10174236 intron CG12814 - chr3R_7_10170001 chr3R_10170001 RAL-280 917 chr3R 10428601 10428611 chr3R 10428806 10428818 4 206 1.0 3.5 2.2 1.2 217 chr3R 10428601 intergenic not near genes chr3R 10428710 intergenic not near genes chr3R 10428818 intergenic not near genes chr3R_4_10425001 chr3R_10425001 RAL-280 918 chr3R 10594593 10594620 chr3R 10594678 10594705 10 84 4.5 4.5 4.5 1.8 112 chr3R 10594593 intron hth - chr3R 10594649 intron hth - chr3R 10594705 intron hth - chr3R_10_10590001 chr3R_10590001 RAL-280 919 chr3R 10727646 10727679 chr3R 10727724 10727759 10 76 1.5 6.5 4.0 2.0 113 chr3R 10727646 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-280 920 chr3R 10732850 10732876 chr3R 10732933 10732961 9 85 1.0 4.5 2.8 2.4 111 chr3R 10732850 intergenic not near genes chr3R 10732906 intergenic not near genes chr3R 10732961 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-280 921 chr3R 10804171 10804193 chr3R 10811703 10811725 17.6 4 7532 0.0 1.5 0.8 2.2 7554 chr3R 10804171 intergenic CG14692 - chr3R 10807948 intergenic not near genes chr3R 10811725 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-280 922 chr3R 10868618 10868624 chr3R 10868669 10868676 4 61 4.5 2.5 3.5 0.9 58 chr3R 10868618 5` UTR SelR - chr3R 10868647 intergenic SelR -,Tsp86D + chr3R 10868676 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-280 923 chr3R 10919687 10919716 chr3R 10919762 10919794 6 78 3.0 1.5 2.2 1.9 107 chr3R 10919687 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-280 924 chr3R 10957863 10957884 chr3R 10963252 10963267 Rt1c 9 5387 4.5 6.0 5.2 1.5 5404 chr3R 10957863 intergenic not near genes chr3R 10960565 intergenic not near genes chr3R 10963267 intergenic not near genes chr3R_9_10960001 chr3R_10960001 RAL-280 925 chr3R 11048279 11048287 chr3R 11048442 11048450 4 163 5.0 1.0 3.0 1.0 171 chr3R 11048279 3` UTR CG34114 + chr3R 11048364 3` UTR CG34114 + chr3R 11048450 3` UTR CG34114 + chr3R_4_11045001 chr3R_11045001 RAL-280 926 chr3R 11197986 11198016 chr3R 11198085 11198088 6 92 2.0 4.5 3.2 1.4 102 chr3R 11197986 intron cu + chr3R 11198037 intron cu + chr3R 11198088 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-280 927 chr3R 11214610 11214634 chr3R 11214719 11214743 8 109 2.0 1.5 1.8 2.9 133 chr3R 11214610 intergenic ZnT86D -,RpS25 - chr3R 11214676 intergenic ZnT86D -,RpS25 - chr3R 11214743 intergenic ZnT86D -,RpS25 - chr3R_8_11210001 chr3R_11210001 RAL-280 928 chr3R 11302740 11302750 chr3R 11302822 11302830 4 81 3.0 5.0 4.0 0.8 90 chr3R 11302740 intron CR31386 - chr3R 11302785 intron CR31386 - chr3R 11302830 intron CR31386 - chr3R_4_11300001 chr3R_11300001 RAL-280 929 chr3R 11307188 11307222 chr3R 11307275 11307308 6 79 2.5 3.5 3.0 1.5 120 chr3R 11307188 intergenic not near genes chr3R 11307248 intergenic not near genes chr3R 11307308 intergenic not near genes chr3R_6_11305001 chr3R_11305001 RAL-280 930 chr3R 11379243 11379268 chr3R 11388398 11388423 roo 6 9155 2.0 1.5 1.8 2.1 9180 chr3R 11379243 intron pros + chr3R 11383833 intron pros + chr3R 11388423 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-280 931 chr3R 11518811 11518829 chr3R 11518902 11518920 8 91 3.5 0.5 2.0 2.7 109 chr3R 11518811 intergenic not near genes chr3R 11518866 intergenic not near genes chr3R 11518920 intergenic not near genes chr3R_8_11515001 chr3R_11515001 RAL-280 932 chr3R 11834167 11834195 chr3R 11834250 11834278 9 82 3.0 5.0 4.0 1.8 111 chr3R 11834167 intron CG6959 - chr3R 11834222 intron CG6959 - chr3R 11834278 intron CG6959 - chr3R_9_11830001 chr3R_11830001 RAL-280 933 chr3R 11841072 11841082 chr3R 11846258 11846273 BS 5 5190 3.0 3.0 3.0 1.2 5201 chr3R 11841072 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846273 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-280 934 chr3R 11853434 11853470 chr3R 11853583 11853632 5 146 0.5 0.0 0.2 4.2 198 chr3R 11853434 intron CG6959 - chr3R 11853533 intron CG6959 - chr3R 11853632 intron CG6959 - chr3R_5_11850001 chr3R_11850001 RAL-280 935 chr3R 11919306 11919338 chr3R 11919390 11919426 6 79 3.5 2.5 3.0 1.5 120 chr3R 11919306 intron Cad87A - chr3R 11919366 intron Cad87A - chr3R 11919426 intron Cad87A - chr3R_6_11915001 chr3R_11915001 RAL-280 936 chr3R 11995008 11995021 chr3R 11995080 11995087 8 75 4.0 0.5 2.2 2.5 79 chr3R 11995008 exon Tk - chr3R 11995048 exon Tk - chr3R 11995087 exon Tk - chr3R_8_11995001 chr3R_11995001 RAL-280 937 chr3R 12022885 12022901 chr3R 12025062 12025078 pogo 4 2177 1.5 3.0 2.2 1.2 2193 chr3R 12022885 intergenic not near genes chr3R 12023982 intergenic not near genes chr3R 12025078 intergenic not near genes chr3R_4_12020001 chr3R_12020001 RAL-280 938 chr3R 12081995 12082028 chr3R 12082071 12082103 8 75 2.5 1.5 2.0 2.7 108 chr3R 12081995 intron CG14741 - chr3R 12082049 intron CG14741 - chr3R 12082103 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-280 939 chr3R 12111900 12111923 chr3R 12111976 12111999 5 76 0.0 0.5 0.2 4.2 99 chr3R 12111900 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111999 intergenic not near genes chr3R_5_12110001 chr3R_12110001 RAL-280 940 chr3R 12154031 12154057 chr3R 12154457 12154491 8 432 11.0 16.0 13.5 0.6 460 chr3R 12154031 intron dpr15 - chr3R 12154261 intron dpr15 - chr3R 12154491 intron dpr15 - chr3R_8_12150001 chr3R_12150001 RAL-280 941 chr3R 12183186 12183207 chr3R 12183272 12183293 7 86 2.0 1.5 1.8 2.5 107 chr3R 12183186 intergenic not near genes chr3R 12183240 intergenic not near genes chr3R 12183293 intergenic not near genes chr3R_7_12180001 chr3R_12180001 RAL-280 942 chr3R 12599006 12599029 chr3R 12599146 12599161 8 137 3.0 5.5 4.2 1.5 155 chr3R 12599006 intergenic not near genes chr3R 12599084 intergenic not near genes chr3R 12599161 intergenic not near genes chr3R_8_12595001 chr3R_12595001 RAL-280 943 chr3R 12733475 12733494 chr3R 12733551 12733571 5 77 4.5 1.0 2.8 1.3 96 chr3R 12733475 intergenic not near genes chr3R 12733523 intergenic not near genes chr3R 12733571 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-280 944 chr3R 12866498 12866513 chr3R 12866645 12866664 7 150 2.0 1.0 1.5 2.8 166 chr3R 12866498 intergenic not near genes chr3R 12866581 intergenic not near genes chr3R 12866664 intergenic not near genes chr3R_7_12865001 chr3R_12865001 RAL-280 945 chr3R 12883794 12883815 chr3R 12883913 12883934 4 119 2.5 1.0 1.8 1.4 140 chr3R 12883794 intergenic not near genes chr3R 12883864 intergenic not near genes chr3R 12883934 intergenic not near genes chr3R_4_12880001 chr3R_12880001 RAL-280 946 chr3R 12920153 12920167 chr3R 12925356 12925370 copia 5 5201 1.0 2.0 1.5 2.0 5217 chr3R 12920153 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925370 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-280 947 chr3R 13120773 13120798 chr3R 13120849 13120875 9 76 2.0 3.5 2.8 2.4 102 chr3R 13120773 intron timeout + chr3R 13120824 intron timeout + chr3R 13120875 intron timeout + chr3R_9_13120001 chr3R_13120001 RAL-280 948 chr3R 13135828 13135859 chr3R 13138003 13138033 pogo 5 2175 1.0 0.5 0.8 2.8 2205 chr3R 13135828 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138033 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-280 949 chr3R 13195950 13195977 chr3R 13196045 13196067 11 92 4.5 1.5 3.0 2.8 117 chr3R 13195950 intergenic not near genes chr3R 13196008 intergenic not near genes chr3R 13196067 intergenic not near genes chr3R_11_13195001 chr3R_13195001 RAL-280 950 chr3R 13391641 13391669 chr3R 13391719 13391747 9 78 3.0 4.0 3.5 2.0 106 chr3R 13391641 intron CCHa2 - chr3R 13391694 intron CCHa2 - chr3R 13391747 intron CCHa2 - chr3R_9_13390001 chr3R_13390001 RAL-280 951 chr3R 13554145 13554166 chr3R 13554224 13554245 6 77 5.0 5.0 5.0 1.0 100 chr3R 13554145 intergenic not near genes chr3R 13554195 intergenic not near genes chr3R 13554245 intergenic not near genes chr3R_6_13550001 chr3R_13550001 RAL-280 952 chr3R 13672944 13672966 chr3R 13673021 13673044 5 78 1.5 0.5 1.0 2.5 100 chr3R 13672944 intron Task6 - chr3R 13672994 intron Task6 - chr3R 13673044 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-280 953 chr3R 13693028 13693028 chr3R 21907534 21907536 12 8214507 6.5 18.0 12.2 0.9 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_12_17800001 chr3R_17800001 RAL-280 954 chr3R 13762503 13762515 chr3R 13762600 13762612 4 97 2.0 3.5 2.8 1.1 109 chr3R 13762503 intron CG34383 + chr3R 13762558 intron CG34383 + chr3R 13762612 intron CG34383 + chr3R_4_13760001 chr3R_13760001 RAL-280 955 chr3R 13782053 13782086 chr3R 13782133 13782167 4 81 1.5 2.5 2.0 1.3 114 chr3R 13782053 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782167 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-280 956 chr3R 13863680 13863712 chr3R 13863768 13863800 7 86 1.0 2.0 1.5 2.8 120 chr3R 13863680 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863800 intergenic not near genes chr3R_7_13860001 chr3R_13860001 RAL-280 957 chr3R 13880551 13880578 chr3R 13880669 13880699 9 118 4.0 5.0 4.5 1.6 148 chr3R 13880551 intergenic not near genes chr3R 13880625 intergenic not near genes chr3R 13880699 intergenic not near genes chr3R_9_13880001 chr3R_13880001 RAL-280 958 chr3R 14049014 14049042 chr3R 14049094 14049122 6 79 3.0 2.5 2.8 1.6 108 chr3R 14049014 intergenic not near genes chr3R 14049068 intergenic not near genes chr3R 14049122 intergenic not near genes chr3R_6_14045001 chr3R_14045001 RAL-280 959 chr3R 14194431 14194449 chr3R 14203579 14203598 roo 7 9149 3.0 1.0 2.0 2.3 9167 chr3R 14194431 intron Dop1R1 - chr3R 14199014 intron Dop1R1 - chr3R 14203598 intron Dop1R1 - chr3R_7_14195001 chr3R_14195001 RAL-280 960 chr3R 14246399 14246416 chr3R 14247891 14247909 jockey 6 1490 5.0 2.0 3.5 1.3 1510 chr3R 14246399 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247909 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-280 961 chr3R 14319067 14319086 chr3R 14319148 14319162 5 80 2.0 1.5 1.8 1.8 95 chr3R 14319067 3` UTR pr-set7 + chr3R 14319114 3` UTR pr-set7 + chr3R 14319162 3` UTR pr-set7 + chr3R_5_14315001 chr3R_14315001 RAL-280 962 chr3R 14356583 14356609 chr3R 14356668 14356694 4 80 3.5 4.5 4.0 0.8 111 chr3R 14356583 intron NK7.1 - chr3R 14356638 intron NK7.1 - chr3R 14356694 intron NK7.1 - chr3R_4_14355001 chr3R_14355001 RAL-280 963 chr3R 14364075 14364087 chr3R 14364135 14364163 5 70 1.5 4.5 3.0 1.2 88 chr3R 14364075 intron NK7.1 - chr3R 14364119 intron NK7.1 - chr3R 14364163 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-280 964 chr3R 14497405 14497434 chr3R 14497485 14497512 13 79 4.0 0.0 2.0 4.3 107 chr3R 14497405 intron CR44177 + chr3R 14497458 intron CR44177 + chr3R 14497512 intron CR44177 + chr3R_13_14495001 chr3R_14495001 RAL-280 965 chr3R 14565797 14565825 chr3R 14565879 14565904 10 81 3.0 7.5 5.2 1.6 107 chr3R 14565797 intergenic CG14852 + chr3R 14565850 intergenic CG14852 + chr3R 14565904 intergenic CG14852 + chr3R_10_14565001 chr3R_14565001 RAL-280 966 chr3R 14624715 14624743 chr3R 14624878 14624906 5 163 1.0 3.5 2.2 1.6 191 chr3R 14624715 intron put - chr3R 14624810 intron put - chr3R 14624906 intron put - chr3R_5_14620001 chr3R_14620001 RAL-280 967 chr3R 14662316 14662340 chr3R 14662397 14662421 6 80 2.5 2.5 2.5 1.7 105 chr3R 14662316 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-280 968 chr3R 14704395 14704416 chr3R 14704469 14704489 5 75 1.0 2.5 1.8 1.8 94 chr3R 14704395 intron kibra - chr3R 14704442 intron kibra - chr3R 14704489 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-280 969 chr3R 14874811 14874845 chr3R 14874895 14874928 9 82 2.5 3.0 2.8 2.4 117 chr3R 14874811 intron btsz - chr3R 14874870 intron btsz - chr3R 14874928 intron btsz - chr3R_9_14870001 chr3R_14870001 RAL-280 970 chr3R 14923729 14923747 chr3R 14923806 14923823 8 76 2.0 3.0 2.5 2.3 94 chr3R 14923729 3` UTR CR45598 - chr3R 14923776 intergenic CR45598 - chr3R 14923823 intergenic CR45598 - chr3R_8_14920001 chr3R_14920001 RAL-280 971 chr3R 15040860 15040894 chr3R 15040985 15041019 8 124 3.5 2.0 2.8 2.1 159 chr3R 15040860 intergenic not near genes chr3R 15040940 intergenic not near genes chr3R 15041019 intergenic not near genes chr3R_8_15040001 chr3R_15040001 RAL-280 972 chr3R 15184534 15184569 chr3R 15184616 15184651 20 80 3.5 4.0 3.8 4.2 117 chr3R 15184534 intron Gyc88E + chr3R 15184592 intron Gyc88E + chr3R 15184651 intron Gyc88E + chr3R_20_15180001 chr3R_15180001 RAL-280 973 chr3R 15286983 15286988 chr3R 21907535 21907535 6 6620549 14.0 18.5 16.2 0.3 6620552 chr3R 15286983 intron Tm1 + chr3R 18597259 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-280 974 chr3R 15302511 15302533 chr3R 15302589 15302611 8 78 1.0 0.5 0.8 4.4 100 chr3R 15302511 intron Tm1 + chr3R 15302561 intron Tm1 + chr3R 15302611 intron Tm1 + chr3R_8_15300001 chr3R_15300001 RAL-280 975 chr3R 15416258 15416284 chr3R 15416336 15416364 8 77 0.5 4.0 2.2 2.5 106 chr3R 15416258 3` UTR Atx2 + chr3R 15416311 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_8_15415001 chr3R_15415001 RAL-280 976 chr3R 15463391 15463411 chr3R 15463468 15463481 6 76 6.5 5.5 6.0 0.9 90 chr3R 15463391 intron AdamTS-A - chr3R 15463436 intron AdamTS-A - chr3R 15463481 intron AdamTS-A - chr3R_6_15460001 chr3R_15460001 RAL-280 977 chr3R 15533774 15533806 chr3R 15534122 15534146 12 346 3.0 3.0 3.0 3.0 372 chr3R 15533774 exon CG18522 - chr3R 15533960 exon CG18522 - chr3R 15534146 exon CG18522 - chr3R_12_15530001 chr3R_15530001 RAL-280 978 chr3R 15601166 15601196 chr3R 15608688 15608718 412 8 7522 4.0 3.5 3.8 1.7 7552 chr3R 15601166 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_8_15600001 chr3R_15600001 RAL-280 979 chr3R 15646794 15646800 chr3R 15646877 15646883 4 83 0.0 3.5 1.8 1.4 89 chr3R 15646794 intergenic not near genes chr3R 15646838 intergenic not near genes chr3R 15646883 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-280 980 chr3R 15778727 15778752 chr3R 15778836 15778861 6 109 3.5 1.5 2.5 1.7 134 chr3R 15778727 intergenic not near genes chr3R 15778794 intergenic not near genes chr3R 15778861 intergenic not near genes chr3R_6_15775001 chr3R_15775001 RAL-280 981 chr3R 15808073 15808100 chr3R 15808162 15808195 10 94 3.5 3.5 3.5 2.2 122 chr3R 15808073 intron alpha-Man-IIb + chr3R 15808134 intron alpha-Man-IIb + chr3R 15808195 intron alpha-Man-IIb + chr3R_10_15805001 chr3R_15805001 RAL-280 982 chr3R 15813324 15813347 chr3R 15813409 15813432 4 85 1.5 1.0 1.2 1.8 108 chr3R 15813324 intron alpha-Man-IIb + chr3R 15813378 intron alpha-Man-IIb + chr3R 15813432 intron alpha-Man-IIb + chr3R_4_15810001 chr3R_15810001 RAL-280 983 chr3R 15937422 15937437 chr3R 15937508 15937512 6 83 8.0 3.0 5.5 0.9 90 chr3R 15937422 intron Sap47 + chr3R 15937467 intron Sap47 + chr3R 15937512 intron Sap47 + chr3R_6_15935001 chr3R_15935001 RAL-280 984 chr3R 15937439 15937447 chr3R 15937507 15937515 4 74 6.0 3.0 4.5 0.7 76 chr3R 15937439 intron Sap47 + chr3R 15937477 intron Sap47 + chr3R 15937515 intron Sap47 + chr3R_4_15935001 chr3R_15935001 RAL-280 985 chr3R 15954413 15954440 chr3R 15954482 15954513 10 73 2.0 5.0 3.5 2.2 100 chr3R 15954413 intron Sap47 + chr3R 15954463 intron Sap47 + chr3R 15954513 intron Sap47 + chr3R_10_15950001 chr3R_15950001 RAL-280 986 chr3R 16165011 16165044 chr3R 16165094 16165128 7 79 4.0 3.5 3.8 1.5 117 chr3R 16165011 intron CG6006 + chr3R 16165070 intron CG6006 + chr3R 16165128 intron CG6006 + chr3R_7_16165001 chr3R_16165001 RAL-280 987 chr3R 16225094 16225110 chr3R 16225179 16225195 7 85 3.0 0.0 1.5 2.8 101 chr3R 16225094 intergenic not near genes chr3R 16225144 intergenic not near genes chr3R 16225195 intergenic tara + chr3R_7_16225001 chr3R_16225001 RAL-280 988 chr3R 16246525 16246556 chr3R 16246601 16246632 5 76 0.0 3.0 1.5 2.0 107 chr3R 16246525 intron tara + chr3R 16246578 intron tara + chr3R 16246632 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-280 989 chr3R 16275602 16275607 chr3R 16275917 16275922 4 315 2.5 4.0 3.2 1.0 320 chr3R 16275602 intron gish + chr3R 16275762 intron gish + chr3R 16275922 intron gish + chr3R_4_16275001 chr3R_16275001 RAL-280 990 chr3R 16472582 16472673 chr3R 16472656 16472755 10 73 1.5 1.5 1.5 4.0 173 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472668 5` UTR Gyc-89Da + chr3R 16472755 5` UTR Gyc-89Da + chr3R_10_16470001 chr3R_16470001 RAL-280 991 chr3R 16536076 16536091 chr3R 16536300 16536310 5 225 1.5 3.0 2.2 1.6 234 chr3R 16536076 intron CG42342 + chr3R 16536193 intron CG42342 + chr3R 16536310 intron CG42342 + chr3R_5_16535001 chr3R_16535001 RAL-280 992 chr3R 16594367 16594397 chr3R 16594503 16594530 8 134 2.5 2.5 2.5 2.3 163 chr3R 16594367 intergenic CG14892 + chr3R 16594448 5` UTR CG14892 + chr3R 16594530 5` UTR CG14892 + chr3R_8_16590001 chr3R_16590001 RAL-280 993 chr3R 16671513 16671534 chr3R 16671599 16671620 4 86 2.0 3.5 2.8 1.1 107 chr3R 16671513 intron Ubx - chr3R 16671566 intron Ubx - chr3R 16671620 intron Ubx - chr3R_4_16670001 chr3R_16670001 RAL-280 994 chr3R 16714086 16714105 chr3R 16714274 16714293 8 188 1.0 4.5 2.8 2.1 207 chr3R 16714086 intron Ubx - chr3R 16714190 intron Ubx - chr3R 16714293 intron Ubx - chr3R_8_16710001 chr3R_16710001 RAL-280 995 chr3R 16714603 16714638 chr3R 16715004 16715039 5 401 3.0 2.5 2.8 1.3 436 chr3R 16714603 intron Ubx - chr3R 16714821 intron Ubx - chr3R 16715039 intron Ubx - chr3R_5_16710001 chr3R_16710001 RAL-280 996 chr3R 16756317 16756353 chr3R 16762508 16762521 diver 14 6188 1.5 1.5 1.5 5.6 6204 chr3R 16756317 intron bxd - chr3R 16759419 intron bxd - chr3R 16762521 intron bxd - chr3R_14_16755001 chr3R_16755001 RAL-280 997 chr3R 16856625 16856634 chr3R 16856732 16856743 4 108 0.5 0.0 0.2 3.3 118 chr3R 16856625 intron iab-8 - chr3R 16856684 intron iab-8 - chr3R 16856743 intron iab-8 - chr3R_4_16855001 chr3R_16855001 RAL-280 998 chr3R 16921827 16921866 chr3R 16921911 16921950 6 84 0.0 1.0 0.5 4.0 123 chr3R 16921827 intron iab-8 - chr3R 16921888 intron iab-8 - chr3R 16921950 intron iab-8 - chr3R_6_16920001 chr3R_16920001 RAL-280 999 chr3R 17178257 17178287 chr3R 17178395 17178425 8 136 2.0 2.5 2.2 2.5 168 chr3R 17178257 intron Mur89F - chr3R 17178341 intron Mur89F - chr3R 17178425 intron Mur89F - chr3R_8_17175001 chr3R_17175001 RAL-280 1000 chr3R 17342512 17342549 chr3R 17342702 17342739 8 188 3.5 7.0 5.2 1.3 227 chr3R 17342512 intron beat-IIa - chr3R 17342626 intron beat-IIa - chr3R 17342739 intron beat-IIa - chr3R_8_17340001 chr3R_17340001 RAL-280 1001 chr3R 17488088 17488108 chr3R 17488170 17488192 9 83 7.0 3.5 5.2 1.5 104 chr3R 17488088 exon Dscam3 - chr3R 17488140 intron Dscam3 - chr3R 17488192 intron Dscam3 - chr3R_9_17485001 chr3R_17485001 RAL-280 1002 chr3R 17858050 17858084 chr3R 17858142 17858176 12 92 3.5 1.5 2.5 3.4 126 chr3R 17858050 intron tinc + chr3R 17858113 intron tinc + chr3R 17858176 intron tinc + chr3R_12_17855001 chr3R_17855001 RAL-280 1003 chr3R 17881888 17881903 chr3R 17881981 17881996 4 93 4.0 0.0 2.0 1.3 108 chr3R 17881888 exon Rim - chr3R 17881942 intron Rim - chr3R 17881996 intron Rim - chr3R_4_17880001 chr3R_17880001 RAL-280 1004 chr3R 18203714 18203725 chr3R 18203791 18203802 6 76 9.5 5.5 7.5 0.7 88 chr3R 18203714 intron CG7985 + chr3R 18203758 intron CG7985 + chr3R 18203802 intron CG7985 + chr3R_6_18200001 chr3R_18200001 RAL-280 1005 chr3R 18231726 18231754 chr3R 18232078 18232107 8 352 4.5 2.0 3.2 1.9 381 chr3R 18231726 intergenic not near genes chr3R 18231916 intergenic not near genes chr3R 18232107 intergenic not near genes chr3R_8_18230001 chr3R_18230001 RAL-280 1006 chr3R 18352581 18352609 chr3R 18352674 18352702 5 93 0.0 2.0 1.0 2.5 121 chr3R 18352581 intron CG15803 - chr3R 18352642 intron CG15803 - chr3R 18352702 intron CG15803 - chr3R_5_18350001 chr3R_18350001 RAL-280 1007 chr3R 18501599 18501626 chr3R 18501680 18501707 5 81 1.5 3.0 2.2 1.6 108 chr3R 18501599 intron fru - chr3R 18501653 intron fru - chr3R 18501707 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-280 1008 chr3R 18600374 18600401 chr3R 18600557 18600584 8 183 23.5 26.0 24.8 0.3 210 chr3R 18600374 intron,intron qin +,CG14304 - chr3R 18600479 intron,intron qin +,CG14304 - chr3R 18600584 intron,intron qin +,CG14304 - chr3R_8_18600001 chr3R_18600001 RAL-280 1009 chr3R 18730024 18730036 chr3R 18730100 18730112 6 76 1.5 5.5 3.5 1.3 88 chr3R 18730024 intron Cha + chr3R 18730068 intron Cha + chr3R 18730112 exon Cha + chr3R_6_18730001 chr3R_18730001 RAL-280 1010 chr3R 18766778 18766803 chr3R 18766856 18766881 10 77 5.5 2.0 3.8 2.1 103 chr3R 18766778 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766881 intron CG7720 - chr3R_10_18765001 chr3R_18765001 RAL-280 1011 chr3R 18781700 18781725 chr3R 18781776 18781784 4 72 2.5 2.0 2.2 1.2 84 chr3R 18781700 intron CG7720 - chr3R 18781742 intron CG7720 - chr3R 18781784 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-280 1012 chr3R 18785865 18785903 chr3R 18785942 18785980 12 75 1.5 0.5 1.0 6.0 115 chr3R 18785865 intron CG7720 - chr3R 18785922 intron CG7720 - chr3R 18785980 intron CG7720 - chr3R_12_18785001 chr3R_18785001 RAL-280 1013 chr3R 18791496 18791521 chr3R 18791574 18791600 7 76 3.0 2.0 2.5 2.0 104 chr3R 18791496 intron CG7720 - chr3R 18791548 intron CG7720 - chr3R 18791600 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-280 1014 chr3R 18808487 18808507 chr3R 18808550 18808560 8 69 0.5 2.0 1.2 3.6 73 chr3R 18808487 intron CG18208 - chr3R 18808524 intron CG18208 - chr3R 18808560 intron CG18208 - chr3R_8_18805001 chr3R_18805001 RAL-280 1015 chr3R 18812074 18812108 chr3R 18812152 18812186 8 78 2.5 4.5 3.5 1.8 112 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-280 1016 chr3R 18836836 18836860 chr3R 18836945 18836970 9 110 4.5 1.5 3.0 2.2 134 chr3R 18836836 intron CG18208 - chr3R 18836903 intron CG18208 - chr3R 18836970 intron CG18208 - chr3R_9_18835001 chr3R_18835001 RAL-280 1017 chr3R 19140262 19140300 chr3R 19140710 19140748 11 447 2.0 3.5 2.8 2.9 486 chr3R 19140262 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140748 3` UTR Ppcs - chr3R_11_19140001 chr3R_19140001 RAL-280 1018 chr3R 19193002 19193013 chr3R 19197306 19197317 F-element 6 4303 0.5 7.5 4.0 1.2 4315 chr3R 19193002 intron CG31475 + chr3R 19195160 intron CG31475 + chr3R 19197317 intron CG31475 + chr3R_6_19195001 chr3R_19195001 RAL-280 1019 chr3R 19472404 19472427 chr3R 19472491 19472513 8 81 4.0 5.5 4.8 1.4 109 chr3R 19472404 intron Dys + chr3R 19472458 intron Dys + chr3R 19472513 intron Dys + chr3R_8_19470001 chr3R_19470001 RAL-280 1020 chr3R 19490446 19490466 chr3R 19490535 19490555 9 89 1.5 7.0 4.2 1.7 109 chr3R 19490446 intron,intron Dys +,CG15025 - chr3R 19490500 intron,intron Dys +,CG15025 - chr3R 19490555 intron,intron Dys +,CG15025 - chr3R_9_19490001 chr3R_19490001 RAL-280 1021 chr3R 19682860 19682862 chr3R 19682938 19682942 5 78 6.0 0.0 3.0 1.2 82 chr3R 19682860 intron Naam + chr3R 19682901 intron Naam + chr3R 19682942 intron Naam + chr3R_5_19680001 chr3R_19680001 RAL-280 1022 chr3R 19682864 19682888 chr3R 19682937 19682968 5 74 4.0 0.0 2.0 1.7 104 chr3R 19682864 intron Naam + chr3R 19682916 intron Naam + chr3R 19682968 intron Naam + chr3R_5_19680001 chr3R_19680001 RAL-280 1023 chr3R 19957279 19957298 chr3R 19957343 19957371 5 69 0.0 2.5 1.2 2.3 92 chr3R 19957279 intron Hs6st - chr3R 19957325 intron Hs6st - chr3R 19957371 intron Hs6st - chr3R_5_19955001 chr3R_19955001 RAL-280 1024 chr3R 20008825 20008855 chr3R 20008906 20008936 4 81 0.0 4.5 2.2 1.2 111 chr3R 20008825 intergenic MED25 +,Hs6st - chr3R 20008880 intergenic MED25 +,Hs6st - chr3R 20008936 intergenic MED25 +,Hs6st - chr3R_4_20005001 chr3R_20005001 RAL-280 1025 chr3R 20020162 20020169 chr3R 20020290 20020293 4 128 2.0 2.5 2.2 1.2 131 chr3R 20020162 intron CG4433 - chr3R 20020228 intron CG4433 - chr3R 20020293 intron CG4433 - chr3R_4_20020001 chr3R_20020001 RAL-280 1026 chr3R 20156703 20156723 chr3R 20165864 20165893 roo 6 9166 1.0 1.0 1.0 3.0 9190 chr3R 20156703 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165893 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-280 1027 chr3R 20197778 20197804 chr3R 20197859 20197885 9 80 4.0 2.5 3.2 2.1 107 chr3R 20197778 intergenic not near genes chr3R 20197832 intergenic not near genes chr3R 20197885 intergenic not near genes chr3R_9_20195001 chr3R_20195001 RAL-280 1028 chr3R 20231445 20231468 chr3R 20231624 20231647 7 181 10.5 4.0 7.2 0.9 202 chr3R 20231445 intron Nlg4 + chr3R 20231546 intron Nlg4 + chr3R 20231647 intron Nlg4 + chr3R_7_20230001 chr3R_20230001 RAL-280 1029 chr3R 20266515 20266528 chr3R 20272986 20272999 Burdock 5 6471 2.0 0.5 1.2 2.3 6484 chr3R 20266515 intron cic + chr3R 20269757 intron cic + chr3R 20272999 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-280 1030 chr3R 20573301 20573320 chr3R 20573502 20573521 4 201 1.5 2.5 2.0 1.3 220 chr3R 20573301 intergenic CG5191 + chr3R 20573411 intergenic CG5191 + chr3R 20573521 intergenic not near genes chr3R_4_20570001 chr3R_20570001 RAL-280 1031 chr3R 20793366 20793396 chr3R 20793446 20793479 4 82 2.0 2.0 2.0 1.3 113 chr3R 20793366 intron Syp + chr3R 20793422 intron Syp + chr3R 20793479 intron Syp + chr3R_4_20790001 chr3R_20790001 RAL-280 1032 chr3R 20901654 20901684 chr3R 20901757 20901787 6 102 3.5 2.0 2.8 1.6 133 chr3R 20901654 intergenic CG5621 + chr3R 20901720 intergenic CG5621 + chr3R 20901787 intergenic CG5621 + chr3R_6_20900001 chr3R_20900001 RAL-280 1033 chr3R 20997420 20997446 chr3R 20997527 20997551 11 107 3.0 2.5 2.8 2.9 131 chr3R 20997420 intron Calx + chr3R 20997486 intron Calx + chr3R 20997551 intron Calx + chr3R_11_20995001 chr3R_20995001 RAL-280 1034 chr3R 21150820 21150835 chr3R 21150955 21150970 5 135 0.0 3.0 1.5 2.0 150 chr3R 21150820 intron SNF4Agamma + chr3R 21150895 intron SNF4Agamma + chr3R 21150970 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-280 1035 chr3R 21154574 21154578 chr3R 21154787 21154793 5 215 3.0 1.5 2.2 1.6 219 chr3R 21154574 intron SNF4Agamma + chr3R 21154684 intron SNF4Agamma + chr3R 21154793 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-280 1036 chr3R 21163252 21163279 chr3R 21163327 21163357 5 77 0.5 0.5 0.5 3.3 105 chr3R 21163252 intron SNF4Agamma + chr3R 21163304 intron SNF4Agamma + chr3R 21163357 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-280 1037 chr3R 21385934 21385961 chr3R 21386011 21386032 6 74 4.0 2.5 3.2 1.4 98 chr3R 21385934 intergenic not near genes chr3R 21385983 intergenic not near genes chr3R 21386032 intergenic not near genes chr3R_6_21385001 chr3R_21385001 RAL-280 1038 chr3R 21472015 21472031 chr3R 21472095 21472112 6 81 3.5 1.0 2.2 1.9 97 chr3R 21472015 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-280 1039 chr3R 21519988 21520128 chr3R 21520089 21520222 4 99 0.0 0.0 0.0 4.0 234 chr3R 21519988 intergenic not near genes chr3R 21520105 intergenic not near genes chr3R 21520222 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-280 1040 chr3R 21759886 21759912 chr3R 21759996 21760005 5 101 2.0 3.5 2.8 1.3 119 chr3R 21759886 exon CG42335 + chr3R 21759946 exon CG42335 + chr3R 21760005 exon CG42335 + chr3R_5_21755001 chr3R_21755001 RAL-280 1041 chr3R 21761119 21761153 chr3R 21768511 21768545 mdg1 9 7387 2.0 1.5 1.8 3.2 7426 chr3R 21761119 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768545 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-280 1042 chr3R 21784857 21784884 chr3R 21784955 21784982 6 98 1.0 0.0 0.5 4.0 125 chr3R 21784857 3` UTR,3` UTR CASK -,CRG - chr3R 21784920 3` UTR,3` UTR CASK -,CRG - chr3R 21784982 3` UTR,3` UTR CASK -,CRG - chr3R_6_21780001 chr3R_21780001 RAL-280 1043 chr3R 8339246 8339246 chr3R 21907534 21907534 4 13568288 12.5 18.0 15.2 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-280 1044 chr3R 21907534 21907534 chr3R 28831801 28831804 17 6924268 18.0 17.0 17.5 0.9 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-280 1045 chr3R 9620954 9620956 chr3R 21907535 21907535 4 12286580 8.5 18.5 13.5 0.3 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-280 1046 chr3R 21907535 21907535 chr3R 28831801 28831802 27 6924266 18.0 17.0 17.5 1.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-280 1047 chr3R 21907536 21907536 chr3R 28831801 28831803 20 6924266 18.0 17.0 17.5 1.1 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-280 1048 chr3R 21924016 21924044 chr3R 21924101 21924127 7 88 3.0 1.5 2.2 2.2 111 chr3R 21924016 intergenic not near genes chr3R 21924072 intergenic not near genes chr3R 21924127 intergenic not near genes chr3R_7_21920001 chr3R_21920001 RAL-280 1049 chr3R 22055562 22055573 chr3R 22055750 22055759 4 188 2.5 4.0 3.2 1.0 197 chr3R 22055562 intron how + chr3R 22055660 intron how + chr3R 22055759 intron how + chr3R_4_22055001 chr3R_22055001 RAL-280 1050 chr3R 22153581 22153603 chr3R 22153661 22153683 10 80 4.0 5.0 4.5 1.8 102 chr3R 22153581 intron SKIP + chr3R 22153632 intron SKIP + chr3R 22153683 intron SKIP + chr3R_10_22150001 chr3R_22150001 RAL-280 1051 chr3R 22190827 22190854 chr3R 22190905 22190932 9 78 3.5 3.5 3.5 2.0 105 chr3R 22190827 intron SKIP + chr3R 22190880 intron SKIP + chr3R 22190932 intron SKIP + chr3R_9_22190001 chr3R_22190001 RAL-280 1052 chr3R 22234685 22234714 chr3R 22236003 22236032 pogo 8 1317 1.5 1.5 1.5 3.2 1347 chr3R 22234685 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236032 intron SKIP + chr3R_8_22235001 chr3R_22235001 RAL-280 1053 chr3R 22272349 22272371 chr3R 22272431 22272453 4 82 2.0 3.0 2.5 1.1 104 chr3R 22272349 intron SKIP + chr3R 22272401 intron SKIP + chr3R 22272453 intron SKIP + chr3R_4_22270001 chr3R_22270001 RAL-280 1054 chr3R 22450543 22450578 chr3R 22453183 22453210 NOF 10 2638 2.0 3.0 2.5 2.9 2667 chr3R 22450543 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453210 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-280 1055 chr3R 22503869 22503905 chr3R 22503949 22503984 11 80 3.0 5.5 4.2 2.1 115 chr3R 22503869 intron Octbeta1R + chr3R 22503926 intron Octbeta1R + chr3R 22503984 intron Octbeta1R + chr3R_11_22500001 chr3R_22500001 RAL-280 1056 chr3R 22538462 22538470 chr3R 22538541 22538555 5 84 2.0 5.5 3.8 1.0 93 chr3R 22538462 intron CG5326 - chr3R 22538508 intron CG5326 - chr3R 22538555 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-280 1057 chr3R 22827416 22827446 chr3R 22827492 22827522 7 76 3.5 1.0 2.2 2.2 106 chr3R 22827416 intergenic CR44350 - chr3R 22827469 intergenic CR44350 - chr3R 22827522 intergenic CR44350 - chr3R_7_22825001 chr3R_22825001 RAL-280 1058 chr3R 22840813 22840847 chr3R 22841275 22841304 8 461 3.5 1.0 2.2 2.5 491 chr3R 22840813 intergenic not near genes chr3R 22841058 intergenic not near genes chr3R 22841304 intergenic not near genes chr3R_8_22840001 chr3R_22840001 RAL-280 1059 chr3R 22860152 22860173 chr3R 22860244 22860265 6 92 6.0 3.5 4.8 1.0 113 chr3R 22860152 intergenic not near genes chr3R 22860208 intergenic not near genes chr3R 22860265 intergenic not near genes chr3R_6_22860001 chr3R_22860001 RAL-280 1060 chr3R 22913919 22913947 chr3R 22913998 22914023 9 76 1.5 1.0 1.2 4.1 104 chr3R 22913919 intron klg + chr3R 22913971 intron klg + chr3R 22914023 intron klg + chr3R_9_22910001 chr3R_22910001 RAL-280 1061 chr3R 22974288 22974308 chr3R 22974370 22974391 6 83 0.5 2.5 1.5 2.4 103 chr3R 22974288 intergenic not near genes chr3R 22974340 intergenic not near genes chr3R 22974391 intergenic not near genes chr3R_6_22970001 chr3R_22970001 RAL-280 1062 chr3R 22993515 22993536 chr3R 22993650 22993671 5 133 1.5 4.5 3.0 1.2 156 chr3R 22993515 intron Nha2 - chr3R 22993593 intron Nha2 - chr3R 22993671 intron Nha2 - chr3R_5_22990001 chr3R_22990001 RAL-280 1063 chr3R 23073670 23073674 chr3R 23073754 23073763 4 88 3.5 2.0 2.8 1.1 93 chr3R 23073670 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073763 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-280 1064 chr3R 23073677 23073686 chr3R 23073747 23073775 4 84 1.5 2.0 1.8 1.4 98 chr3R 23073677 intron CG13830 - chr3R 23073726 intron CG13830 - chr3R 23073775 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-280 1065 chr3R 23335451 23335461 chr3R 23335508 23335539 4 73 3.0 0.5 1.8 1.4 88 chr3R 23335451 intron pnt - chr3R 23335495 intron pnt - chr3R 23335539 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-280 1066 chr3R 23421982 23422011 chr3R 23422059 23422069 11 78 3.0 2.5 2.8 2.9 87 chr3R 23421982 intron CG4374 - chr3R 23422026 intron CG4374 - chr3R 23422069 intron CG4374 - chr3R_11_23420001 chr3R_23420001 RAL-280 1067 chr3R 23497961 23497973 chr3R 23498037 23498055 10 81 4.5 3.0 3.8 2.1 94 chr3R 23497961 intergenic not near genes chr3R 23498008 intergenic not near genes chr3R 23498055 intergenic not near genes chr3R_10_23495001 chr3R_23495001 RAL-280 1068 chr3R 23662847 23662871 chr3R 23662969 23662991 4 123 2.0 2.5 2.2 1.2 144 chr3R 23662847 intron CG31145 - chr3R 23662919 intron CG31145 - chr3R 23662991 intron CG31145 - chr3R_4_23660001 chr3R_23660001 RAL-280 1069 chr3R 23684698 23684724 chr3R 23685184 23685208 roo 8 480 4.5 6.5 5.5 1.2 510 chr3R 23684698 exon CG18754 + chr3R 23684953 intron CG18754 + chr3R 23685208 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-280 1070 chr3R 24024385 24024412 chr3R 24024468 24024495 4 83 1.5 3.5 2.5 1.1 110 chr3R 24024385 intron KrT95D - chr3R 24024440 intron KrT95D - chr3R 24024495 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-280 1071 chr3R 24055038 24055052 chr3R 24055127 24055141 4 89 0.0 3.5 1.8 1.4 103 chr3R 24055038 3` UTR,5` UTR CG6000 +,CR44097 + chr3R 24055090 3` UTR,5` UTR,3` UTR CG6000 +,CR44097 +,Hsp68 - chr3R 24055141 3` UTR Hsp68 - chr3R_4_24055001 chr3R_24055001 RAL-280 1072 chr3R 24072083 24072110 chr3R 24072521 24072528 jockey 9 436 4.0 0.5 2.2 2.8 445 chr3R 24072083 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072528 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-280 1073 chr3R 24076917 24076947 chr3R 24078383 24078413 hobo 9 1466 3.5 0.5 2.0 3.0 1496 chr3R 24076917 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-280 1074 chr3R 24100637 24100659 chr3R 24100727 24100749 5 89 0.0 0.5 0.2 4.2 112 chr3R 24100637 intron 4EHP - chr3R 24100693 intron 4EHP - chr3R 24100749 intron 4EHP - chr3R_5_24100001 chr3R_24100001 RAL-280 1075 chr3R 24199737 24199773 chr3R 24199817 24199853 5 80 0.0 0.5 0.2 4.2 116 chr3R 24199737 intron twin - chr3R 24199795 intron twin - chr3R 24199853 intron twin - chr3R_5_24195001 chr3R_24195001 RAL-280 1076 chr3R 24207217 24207243 chr3R 24212291 24212318 flea 6 5076 1.0 3.5 2.2 1.9 5101 chr3R 24207217 intron twin - chr3R 24209768 intron twin - chr3R 24212318 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-280 1077 chr3R 21907534 21907535 chr3R 24389465 24389465 5 2481930 18.0 5.5 11.8 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-280 1078 chr3R 24433478 24433501 chr3R 24433557 24433580 8 79 0.5 2.0 1.2 3.6 102 chr3R 24433478 intron nAChRalpha1 - chr3R 24433529 intron nAChRalpha1 - chr3R 24433580 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-280 1079 chr3R 24493290 24493309 chr3R 24493519 24493538 BS 4 229 1.0 3.5 2.2 1.2 248 chr3R 24493290 intergenic not near genes chr3R 24493414 intergenic not near genes chr3R 24493538 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-280 1080 chr3R 24927135 24927160 chr3R 24931926 24931934 Doc 4 4786 1.5 2.0 1.8 1.4 4799 chr3R 24927135 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931934 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-280 1081 chr3R 25004899 25004906 chr3R 25004982 25004989 4 83 0.0 2.0 1.0 2.0 90 chr3R 25004899 intron tnc + chr3R 25004944 intron tnc + chr3R 25004989 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-280 1082 chr3R 25209605 25209628 chr3R 25209687 25209709 7 82 3.0 3.0 3.0 1.8 104 chr3R 25209605 intron CG13654 + chr3R 25209657 intron CG13654 + chr3R 25209709 intron CG13654 + chr3R_7_25205001 chr3R_25205001 RAL-280 1083 chr3R 25241799 25241826 chr3R 25241886 25241913 6 87 2.0 4.0 3.0 1.5 114 chr3R 25241799 intergenic to +,CG11854 + chr3R 25241856 intergenic CG11854 +,to + chr3R 25241913 intergenic CG11854 +,to + chr3R_6_25240001 chr3R_25240001 RAL-280 1084 chr3R 25360552 25360564 chr3R 25360744 25360756 4 192 3.5 1.5 2.5 1.1 204 chr3R 25360552 intron Fur1 - chr3R 25360654 intron Fur1 - chr3R 25360756 intron Fur1 - chr3R_4_25360001 chr3R_25360001 RAL-280 1085 chr3R 25419039 25419071 chr3R 25419119 25419151 5 80 1.0 2.5 1.8 1.8 112 chr3R 25419039 intron Fur1 - chr3R 25419095 intron Fur1 - chr3R 25419151 intron Fur1 - chr3R_5_25415001 chr3R_25415001 RAL-280 1086 chr3R 25461406 25461439 chr3R 25462000 25462033 10 592 1.5 1.0 1.2 4.5 627 chr3R 25461406 intron Fur1 - chr3R 25461720 intron Fur1 - chr3R 25462033 intron Fur1 - chr3R_10_25460001 chr3R_25460001 RAL-280 1087 chr3R 25464497 25464524 chr3R 25464808 25464840 8 313 2.0 2.5 2.2 2.5 343 chr3R 25464497 intron Fur1 - chr3R 25464668 intron Fur1 - chr3R 25464840 intron Fur1 - chr3R_8_25460001 chr3R_25460001 RAL-280 1088 chr3R 25612642 25612677 chr3R 25612847 25612883 17 203 2.5 3.5 3.0 4.2 241 chr3R 25612642 intron Npl4 - chr3R 25612762 intron Npl4 - chr3R 25612883 intron Npl4 - chr3R_17_25610001 chr3R_25610001 RAL-280 1089 chr3R 25642589 25642620 chr3R 25642680 25642711 9 90 3.5 3.0 3.2 2.1 122 chr3R 25642589 intron jigr1 + chr3R 25642650 intron jigr1 + chr3R 25642711 intron jigr1 + chr3R_9_25640001 chr3R_25640001 RAL-280 1090 chr3R 25689127 25689158 chr3R 25689235 25689266 6 107 2.5 3.5 3.0 1.5 139 chr3R 25689127 intergenic not near genes chr3R 25689196 intergenic not near genes chr3R 25689266 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-280 1091 chr3R 25796396 25796398 chr3R 25796463 25796477 4 76 8.0 0.0 4.0 0.8 81 chr3R 25796396 intergenic CR43847 - chr3R 25796436 intergenic CR43847 - chr3R 25796477 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-280 1092 chr3R 25832692 25832724 chr3R 25841874 25841906 roo 10 9182 4.5 5.0 4.8 1.7 9214 chr3R 25832692 exon alpha4GT2 + chr3R 25837299 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-280 1093 chr3R 26093856 26093873 chr3R 26093924 26093951 8 76 1.0 4.0 2.5 2.3 95 chr3R 26093856 intron dys - chr3R 26093904 intron dys - chr3R 26093951 intron dys - chr3R_8_26090001 chr3R_26090001 RAL-280 1094 chr3R 26121954 26121973 chr3R 26122049 26122070 7 97 0.0 2.5 1.2 3.2 116 chr3R 26121954 intron CG31324 + chr3R 26122012 intron CG31324 + chr3R 26122070 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-280 1095 chr3R 26122467 26122479 chr3R 26122543 26122555 5 76 4.0 3.0 3.5 1.1 88 chr3R 26122467 intron CG31324 + chr3R 26122511 intron CG31324 + chr3R 26122555 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-280 1096 chr3R 26126273 26126288 chr3R 26126373 26126393 6 104 5.5 7.0 6.2 0.8 120 chr3R 26126273 intron CG31324 + chr3R 26126333 intron CG31324 + chr3R 26126393 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-280 1097 chr3R 26141938 26141970 chr3R 26142179 26142211 4 240 1.0 0.5 0.8 2.2 273 chr3R 26141938 intergenic not near genes chr3R 26142074 intergenic not near genes chr3R 26142211 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-280 1098 chr3R 26235490 26235518 chr3R 26235569 26235596 10 79 2.0 4.0 3.0 2.5 106 chr3R 26235490 5` UTR CR42745 + chr3R 26235543 5` UTR CR42745 + chr3R 26235596 5` UTR CR42745 + chr3R_10_26235001 chr3R_26235001 RAL-280 1099 chr3R 26241252 26241276 chr3R 26241343 26241366 8 91 2.5 1.0 1.8 2.9 114 chr3R 26241252 intron CR42745 + chr3R 26241309 intron CR42745 + chr3R 26241366 intron CR42745 + chr3R_8_26240001 chr3R_26240001 RAL-280 1100 chr3R 26309240 26309276 chr3R 26309502 26309538 10 262 0.5 4.0 2.2 3.1 298 chr3R 26309240 intergenic not near genes chr3R 26309389 intergenic not near genes chr3R 26309538 intergenic not near genes chr3R_10_26305001 chr3R_26305001 RAL-280 1101 chr3R 26325682 26325709 chr3R 26325770 26325797 13 87 3.0 5.0 4.0 2.6 115 chr3R 26325682 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325797 intron CG33970 + chr3R_13_26325001 chr3R_26325001 RAL-280 1102 chr3R 26376325 26376350 chr3R 26385485 26385510 roo 5 9160 2.5 0.0 1.2 2.3 9185 chr3R 26376325 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-280 1103 chr3R 26558330 26558360 chr3R 26565640 26565671 Stalker4 12 7308 3.0 4.0 3.5 2.7 7341 chr3R 26558330 intron scrib + chr3R 26562000 intron scrib + chr3R 26565671 intron scrib + chr3R_12_26560001 chr3R_26560001 RAL-280 1104 chr3R 26641638 26641664 chr3R 26641725 26641741 4 78 3.0 5.0 4.0 0.8 103 chr3R 26641638 intergenic not near genes chr3R 26641690 intergenic not near genes chr3R 26641741 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-280 1105 chr3R 26770242 26770267 chr3R 26770319 26770344 7 77 1.5 4.0 2.8 1.8 102 chr3R 26770242 intergenic CR45563 + chr3R 26770293 intergenic CR45563 + chr3R 26770344 intergenic not near genes chr3R_7_26770001 chr3R_26770001 RAL-280 1106 chr3R 26810554 26810585 chr3R 26811039 26811070 roo 5 485 0.5 1.0 0.8 2.8 516 chr3R 26810554 intron Tl + chr3R 26810812 intron Tl + chr3R 26811070 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-280 1107 chr3R 26881452 26881477 chr3R 26881532 26881556 8 78 3.0 3.5 3.2 1.9 104 chr3R 26881452 intergenic ro -,T48 + chr3R 26881504 intergenic T48 +,ro - chr3R 26881556 intergenic T48 +,ro - chr3R_8_26880001 chr3R_26880001 RAL-280 1108 chr3R 27030229 27030250 chr3R 27030358 27030379 6 127 2.5 0.0 1.2 2.7 150 chr3R 27030229 intron RYa-R + chr3R 27030304 intron RYa-R + chr3R 27030379 intron RYa-R + chr3R_6_27030001 chr3R_27030001 RAL-280 1109 chr3R 27140513 27140548 chr3R 27148123 27148158 412 13 7609 5.0 2.0 3.5 2.9 7645 chr3R 27140513 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_13_27140001 chr3R_27140001 RAL-280 1110 chr3R 27292285 27292308 chr3R 27292396 27292417 10 107 1.0 3.5 2.2 3.1 132 chr3R 27292285 intergenic CG3348 - chr3R 27292351 intergenic CG3348 - chr3R 27292417 intergenic CG3348 - chr3R_10_27290001 chr3R_27290001 RAL-280 1111 chr3R 27327425 27327449 chr3R 27327504 27327528 8 78 2.5 2.5 2.5 2.3 103 chr3R 27327425 intergenic not near genes chr3R 27327476 intergenic not near genes chr3R 27327528 intergenic not near genes chr3R_8_27325001 chr3R_27325001 RAL-280 1112 chr3R 27377480 27377495 chr3R 27377568 27377583 5 87 3.5 5.5 4.5 0.9 103 chr3R 27377480 3` UTR side - chr3R 27377532 3` UTR side - chr3R 27377583 3` UTR side - chr3R_5_27375001 chr3R_27375001 RAL-280 1113 chr3R 27452057 27452090 chr3R 27452133 27452137 6 70 2.5 1.5 2.0 2.0 80 chr3R 27452057 intergenic not near genes chr3R 27452097 intergenic not near genes chr3R 27452137 intergenic not near genes chr3R_6_27450001 chr3R_27450001 RAL-280 1114 chr3R 27478945 27478973 chr3R 27479023 27479051 10 78 1.5 4.5 3.0 2.5 106 chr3R 27478945 exon Cyp6a18 + chr3R 27478998 exon Cyp6a18 + chr3R 27479051 exon Cyp6a18 + chr3R_10_27475001 chr3R_27475001 RAL-280 1115 chr3R 27492379 27492406 chr3R 27492466 27492492 5 87 1.5 0.0 0.8 2.8 113 chr3R 27492379 intergenic not near genes chr3R 27492436 intergenic not near genes chr3R 27492492 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-280 1116 chr3R 27499490 27499502 chr3R 27499579 27499591 5 88 3.5 1.5 2.5 1.4 101 chr3R 27499490 intergenic not near genes chr3R 27499540 intergenic not near genes chr3R 27499591 intergenic not near genes chr3R_5_27495001 chr3R_27495001 RAL-280 1117 chr3R 27573489 27573521 chr3R 27573622 27573654 6 133 1.0 1.0 1.0 3.0 165 chr3R 27573489 intron wdb - chr3R 27573572 intron wdb - chr3R 27573654 intron wdb - chr3R_6_27570001 chr3R_27570001 RAL-280 1118 chr3R 27595059 27595087 chr3R 27595142 27595170 8 79 4.0 1.5 2.8 2.1 111 chr3R 27595059 intron CG5639 - chr3R 27595114 intron CG5639 - chr3R 27595170 intron CG5639 - chr3R_8_27595001 chr3R_27595001 RAL-280 1119 chr3R 27624664 27624685 chr3R 27624759 27624776 8 93 3.5 2.0 2.8 2.1 112 chr3R 27624664 intron,intron Tusp +,CG5612 - chr3R 27624720 intron,intron Tusp +,CG5612 - chr3R 27624776 intron,intron Tusp +,CG5612 - chr3R_8_27620001 chr3R_27620001 RAL-280 1120 chr3R 27779268 27779281 chr3R 27779348 27779360 7 80 3.5 9.0 6.2 1.0 92 chr3R 27779268 exon CG34353 - chr3R 27779314 intron CG34353 - chr3R 27779360 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-280 1121 chr3R 27799938 27799959 chr3R 27800020 27800041 7 82 3.5 2.0 2.8 1.8 103 chr3R 27799938 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800041 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-280 1122 chr3R 27856762 27856786 chr3R 27858245 27858269 hopper2 7 1482 1.5 1.5 1.5 2.8 1507 chr3R 27856762 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858269 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-280 1123 chr3R 27875702 27875733 chr3R 27882757 27882787 297 8 7055 0.5 5.5 3.0 2.0 7085 chr3R 27875702 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_8_27875001 chr3R_27875001 RAL-280 1124 chr3R 28054448 28054472 chr3R 28054523 28054548 9 75 3.0 1.5 2.2 2.8 100 chr3R 28054448 intron CG34362 + chr3R 28054498 intron CG34362 + chr3R 28054548 intron CG34362 + chr3R_9_28050001 chr3R_28050001 RAL-280 1125 chr3R 28068493 28068524 chr3R 28073933 28073966 I-element 7 5441 1.0 1.0 1.0 3.5 5473 chr3R 28068493 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073966 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-280 1126 chr3R 28103323 28103359 chr3R 28103416 28103452 7 89 2.0 2.5 2.2 2.2 129 chr3R 28103323 intergenic not near genes chr3R 28103388 intergenic not near genes chr3R 28103452 intergenic not near genes chr3R_7_28100001 chr3R_28100001 RAL-280 1127 chr3R 28173669 28173701 chr3R 28181099 28181131 mdg1 8 7430 0.5 1.5 1.0 4.0 7462 chr3R 28173669 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181131 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-280 1128 chr3R 28253356 28253373 chr3R 28255853 28255883 jockey 5 2507 4.5 1.5 3.0 1.2 2527 chr3R 28253356 intergenic not near genes chr3R 28254620 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-280 1129 chr3R 28286316 28286347 chr3R 28286404 28286433 10 87 2.0 2.5 2.2 3.1 117 chr3R 28286316 intergenic not near genes chr3R 28286374 intergenic not near genes chr3R 28286433 intergenic not near genes chr3R_10_28285001 chr3R_28285001 RAL-280 1130 chr3R 28298875 28298901 chr3R 28298956 28298986 13 82 2.5 2.5 2.5 3.7 111 chr3R 28298875 intergenic not near genes chr3R 28298930 intergenic not near genes chr3R 28298986 intergenic not near genes chr3R_13_28295001 chr3R_28295001 RAL-280 1131 chr3R 28302108 28302135 chr3R 28302544 28302574 jockey 5 438 2.0 2.5 2.2 1.6 466 chr3R 28302108 intergenic not near genes chr3R 28302341 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-280 1132 chr3R 28363255 28363286 chr3R 28363344 28363358 11 83 3.0 2.5 2.8 2.9 103 chr3R 28363255 intergenic not near genes chr3R 28363306 intergenic not near genes chr3R 28363358 intergenic not near genes chr3R_11_28360001 chr3R_28360001 RAL-280 1133 chr3R 28374441 28374473 chr3R 28375094 28375126 14 653 3.0 5.0 4.0 2.8 685 chr3R 28374441 intergenic not near genes chr3R 28374784 intergenic not near genes chr3R 28375126 intergenic not near genes chr3R_14_28370001 chr3R_28370001 RAL-280 1134 chr3R 28390135 28390139 chr3R 28390195 28390208 4 71 3.5 1.0 2.2 1.2 73 chr3R 28390135 intergenic not near genes chr3R 28390172 intergenic not near genes chr3R 28390208 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-280 1135 chr3R 28393697 28393725 chr3R 28393797 28393824 9 100 3.5 1.5 2.5 2.6 127 chr3R 28393697 intergenic not near genes chr3R 28393760 intergenic not near genes chr3R 28393824 intergenic not near genes chr3R_9_28390001 chr3R_28390001 RAL-280 1136 chr3R 28420989 28421008 chr3R 28421367 28421387 4 377 0.5 2.0 1.2 1.8 398 chr3R 28420989 intron beat-VI + chr3R 28421188 intron beat-VI + chr3R 28421387 intron beat-VI + chr3R_4_28420001 chr3R_28420001 RAL-280 1137 chr3R 28424175 28424205 chr3R 28424264 28424292 12 88 2.0 2.0 2.0 4.0 117 chr3R 28424175 intron beat-VI + chr3R 28424234 intron beat-VI + chr3R 28424292 intron beat-VI + chr3R_12_28420001 chr3R_28420001 RAL-280 1138 chr3R 28478491 28478523 chr3R 28478564 28478599 7 75 0.5 2.0 1.2 3.2 108 chr3R 28478491 intergenic not near genes chr3R 28478545 intergenic not near genes chr3R 28478599 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-280 1139 chr3R 28717829 28717849 chr3R 28718068 28718098 8 241 3.5 4.0 3.8 1.7 269 chr3R 28717829 intron htt + chr3R 28717964 intron htt + chr3R 28718098 intron htt + chr3R_8_28715001 chr3R_28715001 RAL-280 1140 chr3R 28792871 28792903 chr3R 28797966 28797997 jockey 6 5092 1.0 3.0 2.0 2.0 5126 chr3R 28792871 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-280 1141 chr3R 21907534 21907536 chr3R 28831798 28831802 49 6924266 18.0 16.5 17.2 2.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_49_25365001 chr3R_25365001 RAL-280 1142 chr3R 29054023 29054039 chr3R 29054099 29054115 4 76 1.5 1.5 1.5 1.6 92 chr3R 29054023 intergenic CG11842 +,CG11843 + chr3R 29054069 intergenic CG11842 +,CG11843 + chr3R 29054115 intergenic CG11842 +,CG11843 + chr3R_4_29050001 chr3R_29050001 RAL-280 1143 chr3R 29079381 29079399 chr3R 29080753 29080771 NOF 6 1370 1.0 2.0 1.5 2.4 1390 chr3R 29079381 intron CG11873 + chr3R 29080076 intron CG11873 + chr3R 29080771 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-280 1144 chr3R 29140176 29140180 chr3R 29140278 29140284 4 104 3.5 2.0 2.8 1.1 108 chr3R 29140176 intron CG14516 + chr3R 29140230 intron CG14516 + chr3R 29140284 intron CG14516 + chr3R_4_29140001 chr3R_29140001 RAL-280 1145 chr3R 29213061 29213093 chr3R 29213144 29213176 11 83 2.5 3.5 3.0 2.8 115 chr3R 29213061 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213176 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-280 1146 chr3R 29237270 29237285 chr3R 29239277 29239305 9 2016 14.0 8.5 11.2 0.7 2035 chr3R 29237270 exon CG11951 - chr3R 29238288 intron CG11951 - chr3R 29239305 exon CG31427 - chr3R_9_29235001 chr3R_29235001 RAL-280 1147 chr3R 29238776 29238788 chr3R 29238890 29238902 4 113 4.0 1.0 2.5 1.1 126 chr3R 29238776 intergenic CG31427 -,CG11951 - chr3R 29238839 3` UTR CG31427 - chr3R 29238902 3` UTR CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-280 1148 chr3R 29239239 29239247 chr3R 29245528 29245538 4 6290 7.5 20.0 13.8 0.3 6299 chr3R 29239239 exon CG31427 - chr3R 29242388 exon CG31445 - chr3R 29245538 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-280 1149 chr3R 29256252 29256279 chr3R 29256336 29256363 10 83 4.5 6.0 5.2 1.6 111 chr3R 29256252 intergenic CG45544 +,stg - chr3R 29256308 intergenic CG45544 + chr3R 29256363 intergenic CG45544 + chr3R_10_29255001 chr3R_29255001 RAL-280 1150 chr3R 29355976 29355989 chr3R 29356055 29356068 6 79 2.5 4.0 3.2 1.4 92 chr3R 29355976 intergenic CR45547 - chr3R 29356022 intergenic CR45547 - chr3R 29356068 intergenic CR45547 - chr3R_6_29355001 chr3R_29355001 RAL-280 1151 chr3R 29406622 29406646 chr3R 29407899 29407913 jockey 12 1280 3.5 2.0 2.8 3.2 1291 chr3R 29406622 intron Ptp99A + chr3R 29407268 intron Ptp99A + chr3R 29407913 intron Ptp99A + chr3R_12_29405001 chr3R_29405001 RAL-280 1152 chr3R 29447829 29447847 chr3R 29447936 29447954 5 107 3.0 1.5 2.2 1.6 125 chr3R 29447829 intron Ptp99A + chr3R 29447892 intron Ptp99A + chr3R 29447954 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-280 1153 chr3R 29449355 29449391 chr3R 29449433 29449469 4 78 0.5 1.5 1.0 2.0 114 chr3R 29449355 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449469 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-280 1154 chr3R 29472008 29472034 chr3R 29472101 29472127 12 89 2.0 4.5 3.2 2.9 119 chr3R 29472008 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_12_29470001 chr3R_29470001 RAL-280 1155 chr3R 29539434 29539459 chr3R 29539510 29539535 4 75 1.5 0.0 0.8 2.2 101 chr3R 29539434 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-280 1156 chr3R 29882017 29882051 chr3R 29891174 29891208 roo 6 9157 1.5 1.0 1.2 2.7 9191 chr3R 29882017 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-280 1157 chr3R 29950576 29950594 chr3R 29950653 29950669 4 77 2.5 4.0 3.2 1.0 93 chr3R 29950576 intergenic TkR99D - chr3R 29950622 intergenic TkR99D - chr3R 29950669 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-280 1158 chr3R 30001733 30001757 chr3R 30001809 30001832 6 76 5.5 1.0 3.2 1.4 99 chr3R 30001733 intron Tace + chr3R 30001782 intron Tace + chr3R 30001832 intron Tace + chr3R_6_30000001 chr3R_30000001 RAL-280 1159 chr3R 30032160 30032172 chr3R 30032239 30032251 5 79 4.0 1.0 2.5 1.4 91 chr3R 30032160 intron Axn + chr3R 30032206 intron Axn + chr3R 30032251 intron Axn + chr3R_5_30030001 chr3R_30030001 RAL-280 1160 chr3R 30084856 30084882 chr3R 30086322 30086349 hobo 9 1466 5.5 0.5 3.0 2.2 1493 chr3R 30084856 intron sima + chr3R 30085602 intron sima + chr3R 30086349 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-280 1161 chr3R 30088623 30088635 chr3R 30088707 30088721 4 85 0.0 1.5 0.8 2.2 98 chr3R 30088623 intron sima + chr3R 30088672 intron sima + chr3R 30088721 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-280 1162 chr3R 30097060 30097090 chr3R 30097162 30097192 5 101 3.5 1.5 2.5 1.4 132 chr3R 30097060 intron sima + chr3R 30097126 intron sima + chr3R 30097192 intron sima + chr3R_5_30095001 chr3R_30095001 RAL-280 1163 chr3R 30269635 30269665 chr3R 30269718 30269748 8 83 1.0 0.5 0.8 4.4 113 chr3R 30269635 intergenic not near genes chr3R 30269692 intergenic not near genes chr3R 30269748 intergenic not near genes chr3R_8_30265001 chr3R_30265001 RAL-280 1164 chr3R 30330493 30330523 chr3R 30330573 30330602 6 75 1.5 1.5 1.5 2.4 109 chr3R 30330493 intron hdc + chr3R 30330548 intron hdc + chr3R 30330602 intron hdc + chr3R_6_30330001 chr3R_30330001 RAL-280 1165 chr3R 30375546 30375572 chr3R 30383171 30383197 412 4 7625 1.5 1.0 1.2 1.8 7651 chr3R 30375546 intergenic not near genes chr3R 30379372 intergenic not near genes chr3R 30383197 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-280 1166 chr3R 30396216 30396246 chr3R 30404482 30404510 roo 6 8266 2.0 2.0 2.0 2.0 8294 chr3R 30396216 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-280 1167 chr3R 30458027 30458048 chr3R 30458107 30458128 4 80 0.0 1.5 0.8 2.2 101 chr3R 30458027 intron CG2224 - chr3R 30458078 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-280 1168 chr3R 30480474 30480509 chr3R 30482941 30482977 jockey 14 2466 3.0 2.5 2.8 3.7 2503 chr3R 30480474 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_14_30480001 chr3R_30480001 RAL-280 1169 chr3R 30536495 30536522 chr3R 30536576 30536603 7 79 1.5 0.0 0.8 3.9 108 chr3R 30536495 intron tmod + chr3R 30536549 intron tmod + chr3R 30536603 intron tmod + chr3R_7_30535001 chr3R_30535001 RAL-280 1170 chr3R 30566741 30566774 chr3R 30566836 30566869 7 93 4.0 3.5 3.8 1.5 128 chr3R 30566741 intron tmod + chr3R 30566805 intron tmod + chr3R 30566869 intron tmod + chr3R_7_30565001 chr3R_30565001 RAL-280 1171 chr3R 30592504 30592535 chr3R 30592614 30592643 13 109 2.5 2.5 2.5 3.7 139 chr3R 30592504 intergenic CG2246 - chr3R 30592574 intergenic CG2246 - chr3R 30592643 intergenic CG2246 - chr3R_13_30590001 chr3R_30590001 RAL-280 1172 chr3R 30614019 30614046 chr3R 30614097 30614124 10 78 2.0 5.0 3.5 2.2 105 chr3R 30614019 5` UTR CR45571 + chr3R 30614072 5` UTR CR45571 + chr3R 30614124 5` UTR CR45571 + chr3R_10_30610001 chr3R_30610001 RAL-280 1173 chr3R 30627602 30627638 chr3R 30627681 30627691 11 69 2.0 4.5 3.2 2.6 89 chr3R 30627602 3` UTR CG2267 - chr3R 30627646 exon CG2267 - chr3R 30627691 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-280 1174 chr3R 30661783 30661810 chr3R 30661868 30661895 11 85 2.5 2.5 2.5 3.1 112 chr3R 30661783 intergenic not near genes chr3R 30661839 intergenic not near genes chr3R 30661895 intergenic not near genes chr3R_11_30660001 chr3R_30660001 RAL-280 1175 chr3R 30690161 30690192 chr3R 30690245 30690276 11 84 1.5 3.5 2.5 3.1 115 chr3R 30690161 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690276 intergenic Spn100A + chr3R_11_30690001 chr3R_30690001 RAL-280 1176 chr3R 30900519 30900556 chr3R 30900599 30900636 17 79 4.0 2.0 3.0 4.2 117 chr3R 30900519 exon Cyp4c3 + chr3R 30900578 3` UTR Cyp4c3 + chr3R 30900636 3` UTR Cyp4c3 + chr3R_17_30900001 chr3R_30900001 RAL-280 1177 chr3R 30995054 30995074 chr3R 30995122 30995152 8 78 1.5 2.0 1.8 2.9 98 chr3R 30995054 intron 5-HT7 - chr3R 30995103 intron 5-HT7 - chr3R 30995152 intron 5-HT7 - chr3R_8_30995001 chr3R_30995001 RAL-280 1178 chr3R 31042113 31042141 chr3R 31042200 31042228 10 87 1.0 2.5 1.8 3.6 115 chr3R 31042113 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042228 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-280 1179 chr3R 31049502 31049511 chr3R 31049591 31049598 4 89 2.5 2.0 2.2 1.2 96 chr3R 31049502 intron Aph-4 + chr3R 31049550 intron Aph-4 + chr3R 31049598 intron Aph-4 + chr3R_4_31045001 chr3R_31045001 RAL-280 1180 chr3R 31070850 31070876 chr3R 31070930 31070956 8 79 2.0 2.5 2.2 2.5 106 chr3R 31070850 intron Sox100B + chr3R 31070903 intron Sox100B + chr3R 31070956 intron Sox100B + chr3R_8_31070001 chr3R_31070001 RAL-280 1181 chr3R 31074245 31074261 chr3R 31081843 31081859 springer 4 7598 1.0 1.5 1.2 1.8 7614 chr3R 31074245 intron Sox100B + chr3R 31078052 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-280 1182 chr3R 31279375 31279404 chr3R 31285566 31285595 diver 8 6190 3.0 4.0 3.5 1.8 6220 chr3R 31279375 intergenic not near genes chr3R 31282485 intergenic not near genes chr3R 31285595 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-280 1183 chr3R 31413096 31413122 chr3R 31418296 31418303 copia 8 5198 5.0 3.0 4.0 1.6 5207 chr3R 31413096 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418303 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-280 1184 chr3R 31426884 31426907 chr3R 31426972 31426999 4 91 2.0 2.0 2.0 1.3 115 chr3R 31426884 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31426999 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-280 1185 chr3R 31435280 31435301 chr3R 31435740 31435762 9 461 2.0 2.5 2.2 2.8 482 chr3R 31435280 intron Gprk2 + chr3R 31435521 intron Gprk2 + chr3R 31435762 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-280 1186 chr3R 31450760 31450790 chr3R 31450947 31450956 5 171 32.0 19.0 25.5 0.2 196 chr3R 31450760 intron Gprk2 + chr3R 31450858 intron Gprk2 + chr3R 31450956 intron Gprk2 + chr3R_5_31450001 chr3R_31450001 RAL-280 1187 chr3R 31453222 31453237 chr3R 31453300 31453315 5 77 10.0 7.0 8.5 0.5 93 chr3R 31453222 intron Gprk2 + chr3R 31453268 intron Gprk2 + chr3R 31453315 exon Gprk2 + chr3R_5_31450001 chr3R_31450001 RAL-280 1188 chr3R 31557999 31558032 chr3R 31558077 31558110 10 77 5.0 3.0 4.0 2.0 111 chr3R 31557999 intron nyo + chr3R 31558054 intron nyo + chr3R 31558110 intron nyo + chr3R_10_31555001 chr3R_31555001 RAL-280 1189 chr3R 31691535 31691564 chr3R 31696301 31696320 Doc 9 4760 6.0 2.0 4.0 1.8 4785 chr3R 31691535 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696320 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-280 1190 chr3R 31768866 31768900 chr3R 31769150 31769181 13 284 30.0 22.0 26.0 0.5 315 chr3R 31768866 5` UTR pncr017:3R + chr3R 31769024 5` UTR pncr017:3R + chr3R 31769181 5` UTR pncr017:3R + chr3R_13_31765001 chr3R_31765001 RAL-280 1191 chr3R 31997992 31998011 chr3R 32005462 32005480 blood 7 7469 2.5 3.5 3.0 1.8 7488 chr3R 31997992 intron heph - chr3R 32001736 intron heph - chr3R 32005480 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-280 1192 chr3R 32009984 32010017 chr3R 32010109 32010142 7 123 0.0 2.0 1.0 3.5 158 chr3R 32009984 intron heph - chr3R 32010063 intron heph - chr3R 32010142 intron heph - chr3R_7_32010001 chr3R_32010001 RAL-280 1193 chr3R 32038046 32038077 chr3R 32038733 32038766 11 688 12.5 29.5 21.0 0.5 720 chr3R 32038046 intergenic CG2053 + chr3R 32038406 5` UTR CG2053 + chr3R 32038766 exon CG2053 + chr3R_11_32035001 chr3R_32035001 RAL-280 1194 chr4 409223 409249 chr4 409305 409332 7 83 0.5 0.5 0.5 4.7 109 chr4 409223 intergenic not near genes chr4 409278 intergenic not near genes chr4 409332 intergenic not near genes chr4_7_405001 chr4_405001 RAL-280 1195 chr4 671603 671633 chr4 680186 680213 Tirant 6 8582 3.0 2.5 2.8 1.6 8610 chr4 671603 intron CG11360 + chr4 675908 intron CG11360 + chr4 680213 intron CG11360 + chr4_6_675001 chr4_675001 RAL-280 1196 chrX 522189 522211 chrX 522279 522305 5 91 2.5 3.0 2.8 1.3 116 chrX 522189 intron,intron elav -,arg + chrX 522247 intron,intron elav -,arg + chrX 522305 intron,intron elav -,arg + chrX_5_520001 chrX_520001 RAL-280 1197 chrX 706802 706829 chrX 707166 707193 11 362 0.0 2.5 1.2 5.0 391 chrX 706802 intron sdk + chrX 706998 intron sdk + chrX 707193 intron sdk + chrX_11_705001 chrX_705001 RAL-280 1198 chrX 726864 726880 chrX 726933 726933 8 70 1.5 3.5 2.5 2.3 69 chrX 726864 intron sdk + chrX 726898 intron sdk + chrX 726933 intron sdk + chrX_8_725001 chrX_725001 RAL-280 1199 chrX 827604 827630 chrX 835396 835420 roo 9 7792 1.0 1.0 1.0 4.5 7816 chrX 827604 intron CG43867 - chrX 831512 intron CG43867 - chrX 835420 intron CG43867 - chrX_9_830001 chrX_830001 RAL-280 1200 chrX 906701 906727 chrX 908490 908516 S-element 7 1789 3.0 5.5 4.2 1.3 1815 chrX 906701 intron CG43867 - chrX 907608 intron CG43867 - chrX 908516 intron CG43867 - chrX_7_905001 chrX_905001 RAL-280 1201 chrX 1002703 1002714 chrX 1003360 1003371 5 657 1.5 3.0 2.2 1.6 668 chrX 1002703 intergenic not near genes chrX 1003037 intergenic not near genes chrX 1003371 intergenic not near genes chrX_5_1000001 chrX_1000001 RAL-280 1202 chrX 1050556 1050580 chrX 1050629 1050656 5 75 1.5 2.0 1.8 1.8 100 chrX 1050556 intron CR44779 + chrX 1050606 intron CR44779 + chrX 1050656 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-280 1203 chrX 1051075 1051090 chrX 1051153 1051166 5 77 4.5 5.5 5.0 0.8 91 chrX 1051075 intron CR44779 + chrX 1051120 intron CR44779 + chrX 1051166 intron CR44779 + chrX_5_1050001 chrX_1050001 RAL-280 1204 chrX 1163304 1163326 chrX 1163375 1163404 8 77 2.5 1.5 2.0 2.7 100 chrX 1163304 intergenic CG34320 - chrX 1163354 intergenic CG34320 - chrX 1163404 intergenic CG34320 - chrX_8_1160001 chrX_1160001 RAL-280 1205 chrX 1277227 1277260 chrX 1277396 1277429 10 166 4.0 1.5 2.8 2.6 202 chrX 1277227 intergenic not near genes chrX 1277328 intergenic not near genes chrX 1277429 intergenic not near genes chrX_10_1275001 chrX_1275001 RAL-280 1206 chrX 1416410 1416425 chrX 1416472 1416493 4 70 0.5 1.5 1.0 2.0 83 chrX 1416410 intron futsch + chrX 1416452 intron futsch + chrX 1416493 intron futsch + chrX_4_1415001 chrX_1415001 RAL-280 1207 chrX 1518043 1518076 chrX 1523442 1523478 jockey 8 5400 4.0 2.0 3.0 2.0 5435 chrX 1518043 intergenic inc + chrX 1520760 intergenic not near genes chrX 1523478 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-280 1208 chrX 1588664 1588690 chrX 1588749 1588771 5 83 4.0 0.0 2.0 1.7 107 chrX 1588664 intron,intron Mur2B -,br + chrX 1588718 intron,intron Mur2B -,br + chrX 1588771 intron,intron Mur2B -,br + chrX_5_1585001 chrX_1585001 RAL-280 1209 chrX 1627973 1627999 chrX 1635440 1635466 gtwin 8 7467 5.0 2.5 3.8 1.7 7493 chrX 1627973 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635466 intron,intron Mur2B -,br + chrX_8_1630001 chrX_1630001 RAL-280 1210 chrX 1758776 1758804 chrX 1758851 1758879 5 70 2.0 3.0 2.5 1.4 103 chrX 1758776 intergenic not near genes chrX 1758828 intergenic not near genes chrX 1758879 intergenic not near genes chrX_5_1755001 chrX_1755001 RAL-280 1211 chrX 1954886 1954918 chrX 1962826 1962851 Stalker2 4 7934 4.0 1.5 2.8 1.1 7965 chrX 1954886 intron Hr4 + chrX 1958868 intron Hr4 + chrX 1962851 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-280 1212 chrX 2146654 2146684 chrX 2146746 2146777 6 92 5.5 3.5 4.5 1.1 123 chrX 2146654 intron Pgd + chrX 2146716 intron Pgd + chrX 2146777 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-280 1213 chrX 2397922 2397930 chrX 2398014 2398024 4 93 4.0 0.0 2.0 1.3 102 chrX 2397922 intergenic not near genes chrX 2397973 intergenic not near genes chrX 2398024 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-280 1214 chrX 2399835 2399869 chrX 2408188 2408205 roo 7 8346 2.5 1.0 1.8 2.5 8370 chrX 2399835 intergenic not near genes chrX 2404020 intergenic not near genes chrX 2408205 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-280 1215 chrX 2419705 2419723 chrX 2419792 2419793 4 83 1.5 1.5 1.5 1.6 88 chrX 2419705 intergenic not near genes chrX 2419749 intergenic not near genes chrX 2419793 intergenic not near genes chrX_4_2415001 chrX_2415001 RAL-280 1216 chrX 2452514 2452527 chrX 2452586 2452603 4 75 5.5 2.5 4.0 0.8 89 chrX 2452514 intron boi - chrX 2452558 intron boi - chrX 2452603 intron boi - chrX_4_2450001 chrX_2450001 RAL-280 1217 chrX 2578809 2578846 chrX 2578901 2578913 5 87 2.0 1.0 1.5 2.0 104 chrX 2578809 intergenic Pdfr +,Vha36-3 - chrX 2578861 intergenic Pdfr +,Vha36-3 - chrX 2578913 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-280 1218 chrX 2664382 2664415 chrX 2665528 2665561 1360 6 1146 0.5 1.5 1.0 3.0 1179 chrX 2664382 intron sgg + chrX 2664972 intron sgg + chrX 2665561 intron sgg + chrX_6_2660001 chrX_2660001 RAL-280 1219 chrX 2844905 2844932 chrX 2852315 2852342 mdg1 8 7410 1.0 0.5 0.8 4.4 7437 chrX 2844905 intron kirre + chrX 2848624 intron kirre + chrX 2852342 intron kirre + chrX_8_2845001 chrX_2845001 RAL-280 1220 chrX 2888116 2888147 chrX 2888194 2888225 13 78 4.5 5.5 5.0 2.2 109 chrX 2888116 intron kirre + chrX 2888170 intron kirre + chrX 2888225 intron kirre + chrX_13_2885001 chrX_2885001 RAL-280 1221 chrX 3146949 3146982 chrX 3147063 3147075 7 111 1.5 2.5 2.0 2.3 126 chrX 3146949 intron N + chrX 3147012 intron N + chrX 3147075 intron N + chrX_7_3145001 chrX_3145001 RAL-280 1222 chrX 3306346 3306363 chrX 3306428 3306445 4 82 2.0 0.0 1.0 2.0 99 chrX 3306346 intron dnc + chrX 3306396 intron dnc + chrX 3306445 intron dnc + chrX_4_3305001 chrX_3305001 RAL-280 1223 chrX 3493091 3493124 chrX 3502250 3502272 roo 7 9157 2.0 1.0 1.5 2.8 9181 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502272 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-280 1224 chrX 3535418 3535435 chrX 3535509 3535525 4 90 3.0 2.0 2.5 1.1 107 chrX 3535418 intron CG32791 - chrX 3535472 intron CG32791 - chrX 3535525 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-280 1225 chrX 3597551 3597583 chrX 3619719 3619739 roo 10 22166 2.5 2.5 2.5 2.9 22188 chrX 3597551 intron AstA-R1 + chrX 3608645 intron AstA-R1 + chrX 3619739 intron AstA-R1 + chrX_10_3605001 chrX_3605001 RAL-280 1226 chrX 3657418 3657440 chrX 3657494 3657519 9 78 1.0 3.0 2.0 3.0 101 chrX 3657418 intron AstA-R1 + chrX 3657468 intron AstA-R1 + chrX 3657519 intron AstA-R1 + chrX_9_3655001 chrX_3655001 RAL-280 1227 chrX 3726771 3726791 chrX 3730168 3730181 NOF 5 3395 2.0 4.5 3.2 1.2 3410 chrX 3726771 intron tlk + chrX 3728476 intron tlk + chrX 3730181 intron tlk + chrX_5_3725001 chrX_3725001 RAL-280 1228 chrX 3798059 3798069 chrX 3798131 3798157 8 87 2.5 5.5 4.0 1.6 98 chrX 3798059 intergenic not near genes chrX 3798108 intergenic not near genes chrX 3798157 intergenic not near genes chrX_8_3795001 chrX_3795001 RAL-280 1229 chrX 3881273 3881304 chrX 3881410 3881443 9 139 1.5 2.0 1.8 3.2 170 chrX 3881273 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-280 1230 chrX 3986870 3986893 chrX 3994502 3994525 412 4 7632 3.5 4.5 4.0 0.8 7655 chrX 3986870 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994525 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-280 1231 chrX 4048508 4048516 chrX 4048584 4048592 4 76 4.5 3.0 3.8 0.8 84 chrX 4048508 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048592 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-280 1232 chrX 4097719 4097733 chrX 4098023 4098037 5 303 2.5 4.0 3.2 1.2 318 chrX 4097719 3` UTR CG6379 - chrX 4097878 3` UTR CG6379 - chrX 4098037 3` UTR CG6379 - chrX_5_4095001 chrX_4095001 RAL-280 1233 chrX 4101891 4101898 chrX 4101970 4101976 4 79 2.5 4.5 3.5 0.9 85 chrX 4101891 exon CG15375 + chrX 4101934 exon CG15375 + chrX 4101976 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-280 1234 chrX 4187902 4187928 chrX 4188162 4188187 6 260 2.5 0.0 1.2 2.7 285 chrX 4187902 intron Fas2 - chrX 4188044 intron Fas2 - chrX 4188187 intron Fas2 - chrX_6_4185001 chrX_4185001 RAL-280 1235 chrX 4203522 4203543 chrX 4203602 4203623 4 80 2.5 3.5 3.0 1.0 101 chrX 4203522 intron Fas2 - chrX 4203572 intron Fas2 - chrX 4203623 intron Fas2 - chrX_4_4200001 chrX_4200001 RAL-280 1236 chrX 4252947 4252970 chrX 4253035 4253058 5 88 1.0 1.0 1.0 2.5 111 chrX 4252947 intergenic CG15576 - chrX 4253002 intergenic CG15576 - chrX 4253058 intergenic CG15576 - chrX_5_4250001 chrX_4250001 RAL-280 1237 chrX 4269540 4269549 chrX 4269727 4269737 6 189 25.5 29.5 27.5 0.2 197 chrX 4269540 exon CG15572 + chrX 4269638 exon CG15572 + chrX 4269737 exon CG15572 + chrX_6_4265001 chrX_4265001 RAL-280 1238 chrX 4269538 4269550 chrX 4269739 4269748 4 196 25.5 29.0 27.2 0.1 210 chrX 4269538 exon CG15572 + chrX 4269643 exon CG15572 + chrX 4269748 exon CG15572 + chrX_4_4265001 chrX_4265001 RAL-280 1239 chrX 4291505 4291525 chrX 4291611 4291631 5 106 2.5 2.5 2.5 1.4 126 chrX 4291505 intergenic not near genes chrX 4291568 intergenic not near genes chrX 4291631 intergenic not near genes chrX_5_4290001 chrX_4290001 RAL-280 1240 chrX 4396978 4396992 chrX 4397063 4397073 6 84 3.0 2.5 2.8 1.6 95 chrX 4396978 intron CR32773 - chrX 4397026 intron CR32773 - chrX 4397073 intron CR32773 - chrX_6_4395001 chrX_4395001 RAL-280 1241 chrX 4396998 4397010 chrX 4397061 4397094 4 75 1.0 2.5 1.8 1.4 96 chrX 4396998 intron CR32773 - chrX 4397046 intron CR32773 - chrX 4397094 intron CR32773 - chrX_4_4395001 chrX_4395001 RAL-280 1242 chrX 4497633 4497672 chrX 4497714 4497753 7 81 0.5 0.0 0.2 5.8 120 chrX 4497633 intron CR32773 - chrX 4497693 intron CR32773 - chrX 4497753 intron CR32773 - chrX_7_4495001 chrX_4495001 RAL-280 1243 chrX 4613545 4613570 chrX 4613635 4613660 10 90 3.0 2.5 2.8 2.6 115 chrX 4613545 intergenic not near genes chrX 4613602 intergenic not near genes chrX 4613660 intergenic not near genes chrX_10_4610001 chrX_4610001 RAL-280 1244 chrX 4717364 4717387 chrX 4717873 4717905 15 519 3.0 2.0 2.5 4.3 541 chrX 4717364 intron Proc-R + chrX 4717634 intron Proc-R + chrX 4717905 intron Proc-R + chrX_15_4715001 chrX_4715001 RAL-280 1245 chrX 4723574 4723584 chrX 4723654 4723664 4 80 6.0 0.0 3.0 1.0 90 chrX 4723574 intron Proc-R + chrX 4723619 intron Proc-R + chrX 4723664 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-280 1246 chrX 4731813 4731848 chrX 4736906 4736918 jockey 9 5089 0.0 4.5 2.2 2.8 5105 chrX 4731813 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736918 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-280 1247 chrX 4756212 4756233 chrX 12076672 12076680 4 7320454 3.5 3.5 3.5 0.9 7320468 chrX 4756212 intergenic not near genes chrX 8416446 intron Trf2 + chrX 12076680 intron,intron CR43960 +,Ten-a + chrX_4_8415001 chrX_8415001 RAL-280 1248 chrX 4792380 4792405 chrX 4792813 4792838 jockey 10 433 2.0 2.5 2.2 3.1 458 chrX 4792380 intergenic not near genes chrX 4792609 intergenic not near genes chrX 4792838 intergenic not near genes chrX_10_4790001 chrX_4790001 RAL-280 1249 chrX 4827996 4828001 chrX 4835339 4835371 Stalker4 7 7356 2.0 4.5 3.2 1.7 7375 chrX 4827996 intergenic not near genes chrX 4831684 intergenic not near genes chrX 4835371 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-280 1250 chrX 4990046 4990066 chrX 4997260 4997280 roo 4 7214 1.5 1.0 1.2 1.8 7234 chrX 4990046 intron CR44833 - chrX 4993663 intron CR44833 - chrX 4997280 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-280 1251 chrX 5096277 5096303 chrX 5103841 5103868 springer 4 7561 0.0 0.5 0.2 3.3 7591 chrX 5096277 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103868 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-280 1252 chrX 5134801 5134817 chrX 5134902 5134917 5 100 2.5 2.0 2.2 1.6 116 chrX 5134801 intron,intron CG15465 +,rg + chrX 5134859 intron,intron CG15465 +,rg + chrX 5134917 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-280 1253 chrX 5215105 5215116 chrX 5215191 5215201 4 86 6.0 4.0 5.0 0.7 96 chrX 5215105 intron,intron CG15465 +,rg + chrX 5215153 intron,intron CG15465 +,rg + chrX 5215201 intron,intron CG15465 +,rg + chrX_4_5215001 chrX_5215001 RAL-280 1254 chrX 5223702 5223727 chrX 5223780 5223804 6 78 1.0 4.5 2.8 1.6 102 chrX 5223702 intron,intron CG15465 +,rg + chrX 5223753 intron,intron CG15465 +,rg + chrX 5223804 intron,intron CG15465 +,rg + chrX_6_5220001 chrX_5220001 RAL-280 1255 chrX 5883814 5883841 chrX 5884055 5884078 pogo 9 240 0.5 2.0 1.2 4.1 264 chrX 5883814 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884078 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-280 1256 chrX 5884173 5884183 chrX 5884414 5884423 pogo 4 239 3.5 2.5 3.0 1.0 250 chrX 5884173 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884423 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-280 1257 chrX 6171591 6171609 chrX 6179024 6179042 Quasimodo 4 7433 3.0 0.5 1.8 1.4 7451 chrX 6171591 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179042 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-280 1258 chrX 6215342 6215368 chrX 6215425 6215451 8 83 1.5 2.0 1.8 2.9 109 chrX 6215342 intergenic not near genes chrX 6215396 intergenic not near genes chrX 6215451 intergenic not near genes chrX_8_6215001 chrX_6215001 RAL-280 1259 chrX 6335216 6335232 chrX 6337726 6337742 Tirant 7 2510 1.0 2.0 1.5 2.8 2526 chrX 6335216 intergenic not near genes chrX 6336479 intergenic not near genes chrX 6337742 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-280 1260 chrX 6392871 6392904 chrX 6397636 6397669 Doc 8 4765 4.0 2.0 3.0 2.0 4798 chrX 6392871 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397669 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-280 1261 chrX 6562821 6562851 chrX 6571303 6571333 Tirant 18 8479 2.5 6.0 4.2 3.5 8512 chrX 6562821 intron CG34417 + chrX 6567077 intron CG34417 + chrX 6571333 intron CG34417 + chrX_18_6565001 chrX_6565001 RAL-280 1262 chrX 6618466 6618474 chrX 6618542 6618552 4 78 0.5 2.0 1.2 1.8 86 chrX 6618466 intron pigs + chrX 6618509 intron pigs + chrX 6618552 intron pigs + chrX_4_6615001 chrX_6615001 RAL-280 1263 chrX 6833082 6833113 chrX 6833234 6833265 9 152 0.5 0.5 0.5 6.0 183 chrX 6833082 intron nonC + chrX 6833174 intron nonC + chrX 6833265 intron nonC + chrX_9_6830001 chrX_6830001 RAL-280 1264 chrX 6897690 6897710 chrX 6897800 6897820 6 110 1.5 2.0 1.8 2.1 130 chrX 6897690 intergenic not near genes chrX 6897755 intergenic not near genes chrX 6897820 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-280 1265 chrX 6903837 6903867 chrX 6903915 6903946 6 78 1.0 0.5 0.8 3.3 109 chrX 6903837 intergenic not near genes chrX 6903892 intergenic not near genes chrX 6903946 intergenic not near genes chrX_6_6900001 chrX_6900001 RAL-280 1266 chrX 7023609 7023627 chrX 7030999 7031017 Tabor 6 7390 1.5 2.5 2.0 2.0 7408 chrX 7023609 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031017 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-280 1267 chrX 7702906 7702930 chrX 7703345 7703369 jockey 5 437 2.0 2.0 2.0 1.7 463 chrX 7702906 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-280 1268 chrX 7720559 7720583 chrX 7720641 7720665 5 81 0.5 0.5 0.5 3.3 106 chrX 7720559 intergenic not near genes chrX 7720612 intergenic not near genes chrX 7720665 intergenic not near genes chrX_5_7720001 chrX_7720001 RAL-280 1269 chrX 7845724 7845755 chrX 7847215 7847245 hopper2 5 1491 4.0 3.0 3.5 1.1 1521 chrX 7845724 intergenic not near genes chrX 7846484 intergenic not near genes chrX 7847245 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-280 1270 chrX 8085579 8085603 chrX 8085664 8085689 10 86 0.5 1.0 0.8 5.6 110 chrX 8085579 intron,5` UTR CG2256 -,CR45535 + chrX 8085634 intron,5` UTR CG2256 -,CR45535 + chrX 8085689 intron,5` UTR CG2256 -,CR45535 + chrX_10_8085001 chrX_8085001 RAL-280 1271 chrX 8092287 8092320 chrX 8092372 8092405 4 84 1.0 1.0 1.0 2.0 118 chrX 8092287 intron Ubc-E2H - chrX 8092346 intron Ubc-E2H - chrX 8092405 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-280 1272 chrX 8163631 8163654 chrX 8163713 8163727 6 80 0.0 2.0 1.0 3.0 96 chrX 8163631 intergenic CR45536 + chrX 8163679 intergenic CR45536 + chrX 8163727 intergenic CR45536 + chrX_6_8160001 chrX_8160001 RAL-280 1273 chrX 8513097 8513125 chrX 8513364 8513392 4 267 1.0 0.0 0.5 2.7 295 chrX 8513097 intron CG33181 + chrX 8513244 intron CG33181 + chrX 8513392 intron CG33181 + chrX_4_8510001 chrX_8510001 RAL-280 1274 chrX 8682851 8682881 chrX 8682939 8682969 4 88 5.0 2.0 3.5 0.9 118 chrX 8682851 intron CG11284 + chrX 8682910 intron CG11284 + chrX 8682969 intron CG11284 + chrX_4_8680001 chrX_8680001 RAL-280 1275 chrX 8765374 8765389 chrX 8765458 8765474 6 83 1.5 1.0 1.2 2.7 100 chrX 8765374 intron Lim1 - chrX 8765424 intron Lim1 - chrX 8765474 intron Lim1 - chrX_6_8765001 chrX_8765001 RAL-280 1276 chrX 8922328 8922350 chrX 8922762 8922784 jockey 8 434 3.5 4.0 3.8 1.7 456 chrX 8922328 intron rdgA + chrX 8922556 intron rdgA + chrX 8922784 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-280 1277 chrX 9337942 9337973 chrX 9338034 9338062 6 90 2.0 3.5 2.8 1.6 120 chrX 9337942 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338062 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-280 1278 chrX 9508137 9508166 chrX 9509655 9509684 jockey 12 1517 2.0 3.5 2.8 3.2 1547 chrX 9508137 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509684 intron CG32700 - chrX_12_9505001 chrX_9505001 RAL-280 1279 chrX 9575796 9575802 chrX 9576120 9576126 mdg3 4 324 7.0 5.5 6.2 0.6 330 chrX 9575796 intron,exon CG32699 -,CG42395 - chrX 9575961 intron,intron CG32699 -,CG42395 - chrX 9576126 intron,exon CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-280 1280 chrX 9575803 9575821 chrX 9576118 9576145 mdg3 8 320 1.5 5.0 3.2 1.9 342 chrX 9575803 intron,exon CG32699 -,CG42395 - chrX 9575974 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-280 1281 chrX 10427847 10427854 chrX 10427913 10427932 5 75 5.5 5.0 5.2 0.8 85 chrX 10427847 intron CG32683 - chrX 10427890 intron CG32683 - chrX 10427932 intron CG32683 - chrX_5_10425001 chrX_10425001 RAL-280 1282 chrX 10532507 10532524 chrX 10532586 10532602 4 78 1.0 1.0 1.0 2.0 95 chrX 10532507 intron spri - chrX 10532554 intron spri - chrX 10532602 intron spri - chrX_4_10530001 chrX_10530001 RAL-280 1283 chrX 10550854 10550885 chrX 10552320 10552352 hobo 6 1467 3.0 2.0 2.5 1.7 1498 chrX 10550854 intron spri - chrX 10551603 intron spri - chrX 10552352 intron spri - chrX_6_10550001 chrX_10550001 RAL-280 1284 chrX 10686049 10686078 chrX 10691186 10691215 roo 6 5137 0.5 2.0 1.2 2.7 5166 chrX 10686049 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_6_10685001 chrX_10685001 RAL-280 1285 chrX 10719128 10719149 chrX 10719212 10719233 5 84 0.0 2.0 1.0 2.5 105 chrX 10719128 intron CG32676 - chrX 10719180 intron CG32676 - chrX 10719233 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-280 1286 chrX 11633418 11633442 chrX 11640472 11640495 297 5 7054 1.5 0.5 1.0 2.5 7077 chrX 11633418 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640495 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-280 1287 chrX 11684869 11684882 chrX 11684995 11685008 4 126 3.0 0.0 1.5 1.6 139 chrX 11684869 intron bif + chrX 11684938 intron bif + chrX 11685008 intron bif + chrX_4_11680001 chrX_11680001 RAL-280 1288 chrX 12043837 12043863 chrX 12043926 12043952 6 88 1.0 0.5 0.8 3.3 115 chrX 12043837 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043894 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043952 5` UTR,5` UTR CR43960 +,Ten-a + chrX_6_12040001 chrX_12040001 RAL-280 1289 chrX 12176736 12176765 chrX 12176812 12176841 7 76 3.0 5.0 4.0 1.4 105 chrX 12176736 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176841 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-280 1290 chrX 12301958 12301983 chrX 12303264 12303289 X-element 6 1304 1.0 0.5 0.8 3.3 1331 chrX 12301958 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303289 intron Ten-a + chrX_6_12300001 chrX_12300001 RAL-280 1291 chrX 12430947 12430962 chrX 12431025 12431033 5 77 4.0 1.5 2.8 1.3 86 chrX 12430947 intergenic not near genes chrX 12430990 intergenic not near genes chrX 12431033 intergenic not near genes chrX_5_12430001 chrX_12430001 RAL-280 1292 chrX 12557152 12557161 chrX 12557228 12557237 4 75 5.5 6.0 5.8 0.6 85 chrX 12557152 intron CG43921 - chrX 12557194 intron CG43921 - chrX 12557237 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-280 1293 chrX 13124531 13124565 chrX 13124679 13124713 9 145 1.5 2.0 1.8 3.2 182 chrX 13124531 intron CG32638 - chrX 13124622 intron CG32638 - chrX 13124713 intron CG32638 - chrX_9_13120001 chrX_13120001 RAL-280 1294 chrX 13161691 13161725 chrX 13161767 13161801 6 77 2.0 0.5 1.2 2.7 110 chrX 13161691 3` UTR CG12096 + chrX 13161746 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161801 3` UTR,3` UTR CG12096 +,CG34411 - chrX_6_13160001 chrX_13160001 RAL-280 1295 chrX 13172355 13172369 chrX 13172431 13172445 5 76 3.5 3.5 3.5 1.1 90 chrX 13172355 exon CG34411 - chrX 13172400 intron CG34411 - chrX 13172445 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-280 1296 chrX 13374838 13374867 chrX 13374918 13374945 5 79 1.5 1.0 1.2 2.3 107 chrX 13374838 intron CG1640 + chrX 13374892 intron CG1640 + chrX 13374945 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-280 1297 chrX 13442143 13442170 chrX 13442234 13442236 4 85 1.0 2.0 1.5 1.6 93 chrX 13442143 intergenic not near genes chrX 13442190 intergenic not near genes chrX 13442236 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-280 1298 chrX 13975349 13975363 chrX 13976059 13976070 4 709 3.0 4.0 3.5 0.9 721 chrX 13975349 intron mamo - chrX 13975710 intron mamo - chrX 13976070 intron mamo - chrX_4_13975001 chrX_13975001 RAL-280 1299 chrX 14105028 14105056 chrX 14114177 14114206 roo 8 9148 2.5 2.5 2.5 2.3 9178 chrX 14105028 intergenic not near genes chrX 14109617 intergenic not near genes chrX 14114206 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-280 1300 chrX 14312776 14312807 chrX 14312857 14312888 4 81 1.5 1.0 1.2 1.8 112 chrX 14312776 intergenic not near genes chrX 14312832 intergenic not near genes chrX 14312888 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-280 1301 chrX 14337723 14337749 chrX 14337833 14337858 7 110 2.0 0.5 1.2 3.2 135 chrX 14337723 intron dpr8 + chrX 14337790 intron dpr8 + chrX 14337858 intron dpr8 + chrX_7_14335001 chrX_14335001 RAL-280 1302 chrX 14353444 14353467 chrX 14353527 14353550 5 82 1.0 5.5 3.2 1.2 106 chrX 14353444 intron dpr8 + chrX 14353497 intron dpr8 + chrX 14353550 intron dpr8 + chrX_5_14350001 chrX_14350001 RAL-280 1303 chrX 14572895 14572907 chrX 14572968 14572994 4 84 2.0 2.5 2.2 1.2 99 chrX 14572895 intergenic not near genes chrX 14572944 intergenic not near genes chrX 14572994 intergenic not near genes chrX_4_14570001 chrX_14570001 RAL-280 1304 chrX 14589686 14589704 chrX 14589921 14589941 pogo 8 237 1.0 0.0 0.5 5.3 255 chrX 14589686 intron CG9413 - chrX 14589814 intron CG9413 - chrX 14589941 intron CG9413 - chrX_8_14585001 chrX_14585001 RAL-280 1305 chrX 14636467 14636491 chrX 14641906 14641932 I-element 9 5436 2.5 3.0 2.8 2.4 5465 chrX 14636467 intron NetA - chrX 14639200 intron NetA - chrX 14641932 intron NetA - chrX_9_14635001 chrX_14635001 RAL-280 1306 chrX 14818784 14818797 chrX 14823972 14823976 copia 4 5190 2.5 2.5 2.5 1.1 5192 chrX 14818784 intron rut - chrX 14821380 intron rut - chrX 14823976 intron rut - chrX_4_14820001 chrX_14820001 RAL-280 1307 chrX 15123301 15123313 chrX 15123410 15123440 6 121 1.5 3.0 2.2 1.9 139 chrX 15123301 intergenic not near genes chrX 15123370 intergenic not near genes chrX 15123440 intergenic not near genes chrX_6_15120001 chrX_15120001 RAL-280 1308 chrX 15273710 15273733 chrX 15274876 15274898 1360 4 1166 8.0 4.5 6.2 0.6 1188 chrX 15273710 intergenic not near genes chrX 15274304 intergenic not near genes chrX 15274898 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-280 1309 chrX 15413050 15413079 chrX 15417352 15417381 Juan 10 4300 3.0 1.0 2.0 3.3 4331 chrX 15413050 intron Cngl - chrX 15415216 intron Cngl - chrX 15417381 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-280 1310 chrX 15435688 15435704 chrX 15436120 15436137 rover 8 433 0.5 3.5 2.0 2.7 449 chrX 15435688 intron Cngl - chrX 15435912 intron Cngl - chrX 15436137 intron Cngl - chrX_8_15435001 chrX_15435001 RAL-280 1311 chrX 16329435 16329447 chrX 16329518 16329530 5 83 0.0 5.0 2.5 1.4 95 chrX 16329435 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329530 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-280 1312 chrX 16690455 16690474 chrX 16690534 16690553 9 78 3.0 2.0 2.5 2.6 98 chrX 16690455 intron Sep4 - chrX 16690504 intron Sep4 - chrX 16690553 intron Sep4 - chrX_9_16690001 chrX_16690001 RAL-280 1313 chrX 16821237 16821264 chrX 16821317 16821343 6 79 1.5 0.5 1.0 3.0 106 chrX 16821237 intron CG4829 + chrX 16821290 intron CG4829 + chrX 16821343 intron CG4829 + chrX_6_16820001 chrX_16820001 RAL-280 1314 chrX 17011965 17011999 chrX 17012047 17012082 10 82 2.0 3.5 2.8 2.6 117 chrX 17011965 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012082 intron CG45002 - chrX_10_17010001 chrX_17010001 RAL-280 1315 chrX 17122640 17122669 chrX 17122730 17122759 6 90 3.0 1.5 2.2 1.9 119 chrX 17122640 intron CG5004 + chrX 17122700 intron CG5004 + chrX 17122759 intron CG5004 + chrX_6_17120001 chrX_17120001 RAL-280 1316 chrX 17911850 17911863 chrX 17911938 17911951 4 88 1.0 2.0 1.5 1.6 101 chrX 17911850 intron CG6847 + chrX 17911900 intron CG6847 + chrX 17911951 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-280 1317 chrX 18028968 18028987 chrX 18029062 18029089 9 102 1.0 6.5 3.8 1.9 121 chrX 18028968 intron Sh - chrX 18029028 intron Sh - chrX 18029089 intron Sh - chrX_9_18025001 chrX_18025001 RAL-280 1318 chrX 18126821 18126830 chrX 18126898 18126907 4 76 1.0 0.5 0.8 2.2 86 chrX 18126821 intron CG32553 - chrX 18126864 5` UTR CG32553 - chrX 18126907 intron CG32553 - chrX_4_18125001 chrX_18125001 RAL-280 1319 chrX 18194069 18194102 chrX 18194604 18194637 BS 6 534 1.0 1.0 1.0 3.0 568 chrX 18194069 intron Frq2 + chrX 18194353 intron Frq2 + chrX 18194637 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-280 1320 chrX 18245701 18245728 chrX 18246036 18246063 10 332 2.0 2.0 2.0 3.3 362 chrX 18245701 intergenic not near genes chrX 18245882 intergenic not near genes chrX 18246063 intergenic not near genes chrX_10_18245001 chrX_18245001 RAL-280 1321 chrX 18270064 18270070 chrX 18270139 18270158 4 84 1.0 1.5 1.2 1.8 94 chrX 18270064 intergenic not near genes chrX 18270111 intergenic not near genes chrX 18270158 intergenic not near genes chrX_4_18270001 chrX_18270001 RAL-280 1322 chrX 18322641 18322674 chrX 18322732 18322757 6 87 2.0 1.5 1.8 2.1 116 chrX 18322641 intergenic CG6123 - chrX 18322699 intergenic CG6123 - chrX 18322757 intergenic CG6123 - chrX_6_18320001 chrX_18320001 RAL-280 1323 chrX 18490045 18490052 chrX 18490200 18490204 4 154 2.5 5.5 4.0 0.8 159 chrX 18490045 intergenic CG15046 - chrX 18490124 intergenic not near genes chrX 18490204 intergenic not near genes chrX_4_18490001 chrX_18490001 RAL-280 1324 chrX 18558798 18558804 chrX 18558880 18558886 4 82 0.0 3.5 1.8 1.4 88 chrX 18558798 intron Bx + chrX 18558842 intron Bx + chrX 18558886 intron Bx + chrX_4_18555001 chrX_18555001 RAL-280 1325 chrX 18645013 18645038 chrX 18645111 18645136 7 98 4.5 1.5 3.0 1.8 123 chrX 18645013 intron Rip11 - chrX 18645074 intron Rip11 - chrX 18645136 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-280 1326 chrX 19014375 19014393 chrX 19014438 19014471 4 67 1.5 1.5 1.5 1.6 96 chrX 19014375 intron CG43759 + chrX 19014423 intron CG43759 + chrX 19014471 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-280 1327 chrX 19020597 19020620 chrX 19020675 19020698 5 78 0.0 1.5 0.8 2.8 101 chrX 19020597 intron CG43759 + chrX 19020648 intron CG43759 + chrX 19020698 intron CG43759 + chrX_5_19020001 chrX_19020001 RAL-280 1328 chrX 19060408 19060439 chrX 19065192 19065223 Doc 4 4784 1.0 1.5 1.2 1.8 4815 chrX 19060408 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065223 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-280 1329 chrX 19106025 19106040 chrX 19106242 19106257 4 217 0.5 0.5 0.5 2.7 232 chrX 19106025 intergenic not near genes chrX 19106141 intergenic not near genes chrX 19106257 intergenic not near genes chrX_4_19105001 chrX_19105001 RAL-280 1330 chrX 19125680 19125692 chrX 19125762 19125776 4 84 6.0 1.0 3.5 0.9 96 chrX 19125680 intron tgy - chrX 19125728 intron tgy - chrX 19125776 intron tgy - chrX_4_19125001 chrX_19125001 RAL-280 1331 chrX 19136565 19136585 chrX 19143473 19143504 412 7 6917 0.5 1.0 0.8 3.9 6939 chrX 19136565 intergenic not near genes chrX 19140034 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-280 1332 chrX 13057298 13057299 chrX 19242812 19242813 4 6185514 2.5 0.0 1.2 1.8 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-280 1333 chrX 19380161 19380181 chrX 19380402 19380420 pogo 6 241 7.5 1.0 4.2 1.2 259 chrX 19380161 intron kek5 + chrX 19380290 intron kek5 + chrX 19380420 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-280 1334 chrX 19472125 19472156 chrX 19472695 19472708 jockey 8 567 3.0 2.0 2.5 2.3 583 chrX 19472125 intergenic kek5 + chrX 19472416 intergenic not near genes chrX 19472708 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-280 1335 chrX 19710071 19710093 chrX 19711857 19711862 S-element 4 1782 5.0 6.5 5.8 0.6 1791 chrX 19710071 intron meso18E - chrX 19710966 intron meso18E - chrX 19711862 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-280 1336 chrX 19897381 19897415 chrX 19897458 19897492 7 77 0.5 4.5 2.5 2.0 111 chrX 19897381 intron Hers + chrX 19897436 intron Hers + chrX 19897492 intron Hers + chrX_7_19895001 chrX_19895001 RAL-280 1337 chrX 20015895 20015919 chrX 20016016 20016018 4 116 1.0 2.5 1.8 1.4 123 chrX 20015895 intron Dop2R - chrX 20015956 intron Dop2R - chrX 20016018 intron Dop2R - chrX_4_20015001 chrX_20015001 RAL-280 1338 chrX 20052797 20052815 chrX 20052870 20052899 5 79 1.5 0.5 1.0 2.5 102 chrX 20052797 intron Dop2R - chrX 20052848 intron Dop2R - chrX 20052899 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-280 1339 chrX 20069270 20069297 chrX 20069403 20069427 5 128 1.0 2.0 1.5 2.0 157 chrX 20069270 intergenic not near genes chrX 20069348 intergenic not near genes chrX 20069427 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-280 1340 chrX 20126898 20126911 chrX 20126977 20126982 4 74 2.5 3.5 3.0 1.0 84 chrX 20126898 intergenic not near genes chrX 20126940 intergenic not near genes chrX 20126982 intergenic not near genes chrX_4_20125001 chrX_20125001 RAL-280 1341 chrX 20312880 20312910 chrX 20312958 20312988 6 78 1.5 1.5 1.5 2.4 108 chrX 20312880 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312988 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-280 1342 chrX 20377326 20377348 chrX 20378793 20378807 hobo 7 1465 4.0 6.0 5.0 1.2 1481 chrX 20377326 intergenic not near genes chrX 20378066 intergenic not near genes chrX 20378807 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-280 1343 chrX 20468028 20468041 chrX 20468116 20468130 4 88 0.0 0.0 0.0 4.0 102 chrX 20468028 intron GstT3 + chrX 20468079 intron GstT3 + chrX 20468130 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-280 1344 chrX 20583725 20583756 chrX 20583894 20583927 8 169 0.5 0.0 0.2 6.7 202 chrX 20583725 intergenic not near genes chrX 20583826 intergenic not near genes chrX 20583927 intergenic not near genes chrX_8_20580001 chrX_20580001 RAL-280 1345 chrX 20836750 20836758 chrX 20844328 20844360 roo 4 7596 1.0 2.0 1.5 1.6 7610 chrX 20836750 intron shakB - chrX 20840555 intron shakB - chrX 20844360 intron shakB - chrX_4_20840001 chrX_20840001 RAL-280 1346 chrX 20940718 20940750 chrX 20942187 20942218 hobo 8 1468 6.5 3.5 5.0 1.3 1500 chrX 20940718 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942218 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-280 1347 chrX 21060878 21060900 chrX 21060964 21060984 11 85 2.5 4.0 3.2 2.6 106 chrX 21060878 5` UTR bves + chrX 21060931 5` UTR bves + chrX 21060984 5` UTR bves + chrX_11_21060001 chrX_21060001 RAL-280 1348 chrX 21253282 21253308 chrX 21253359 21253385 13 76 3.5 3.0 3.2 3.1 103 chrX 21253282 intron CG32521 - chrX 21253334 intron CG32521 - chrX 21253385 intron CG32521 - chrX_13_21250001 chrX_21250001 RAL-280 1349 chrX 21419703 21419736 chrX 21419791 21419823 10 88 0.5 3.5 2.0 3.3 120 chrX 21419703 intergenic not near genes chrX 21419763 intergenic not near genes chrX 21419823 intergenic not near genes chrX_10_21415001 chrX_21415001 RAL-280 1350 chrX 21458691 21458710 chrX 21464127 21464146 Ivk 4 5436 2.0 1.5 1.8 1.4 5455 chrX 21458691 intergenic not near genes chrX 21461418 intergenic not near genes chrX 21464146 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-280 1351 chrX 21467013 21467040 chrX 21467097 21467122 7 84 1.0 1.0 1.0 3.5 109 chrX 21467013 intergenic CR45507 - chrX 21467068 intergenic CR45507 - chrX 21467122 intergenic CR45507 - chrX_7_21465001 chrX_21465001 RAL-280 1352 chrX 21474406 21474432 chrX 21474768 21474797 1731 4 364 2.0 1.5 1.8 1.4 391 chrX 21474406 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474797 intergenic not near genes chrX_4_21470001 chrX_21470001 RAL-280 1353 chrX 22660576 22660597 chrX 22660659 22660675 6 82 2.0 0.0 1.0 3.0 99 chrX 22660576 intron CR44997 + chrX 22660626 intron CR44997 + chrX 22660675 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-280 1354 chrX 22697499 22697524 chrX 22701789 22701821 Juan 5 4296 1.0 2.0 1.5 2.0 4322 chrX 22697499 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701821 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-280 1355 chrX 22784081 22784103 chrX 22784164 22784186 4 82 2.0 1.0 1.5 1.6 105 chrX 22784081 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784186 intron CR44997 + chrX_4_22780001 chrX_22780001 RAL-280 1356 chrX 22811997 22812003 chrX 22816769 22816774 F-element 4 4772 3.5 3.5 3.5 0.9 4777 chrX 22811997 intergenic CG12446 - chrX 22814386 intergenic not near genes chrX 22816774 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-280 1357 chrX 22870878 22870900 chrX 22870967 22870990 8 90 0.0 4.5 2.2 2.5 112 chrX 22870878 intron,3` UTR CG42346 +,CR43656 - chrX 22870934 intron,3` UTR CG42346 +,CR43656 - chrX 22870990 intron,3` UTR CG42346 +,CR43656 - chrX_8_22870001 chrX_22870001 RAL-280 1358 chrX 22922522 22922552 chrX 22922602 22922604 6 74 0.5 1.0 0.8 3.3 82 chrX 22922522 intergenic not near genes chrX 22922563 intergenic not near genes chrX 22922604 intergenic not near genes chrX_6_22920001 chrX_22920001 RAL-280 1359 chrY 975599 975815 chrY 975716 975878 9 113 107.0 101.5 104.2 0.1 279 chrY 975599 intergenic not near genes chrY 975738 intergenic not near genes chrY 975878 intergenic not near genes chrY_9_975001 chrY_975001 RAL-280