SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47480	47489	chr2L	52585	52594	jockey	7	5105	4.0	3.5	3.8	1.5	5114	chr2L	47480	intron	Cda5 -	chr2L	50037	intron	Cda5 -	chr2L	52594	intron	Cda5 -	chr2L_7_50001	chr2L_50001	RAL-256
8	chr2L	686923	686942	chr2L	695958	695982	roo	9	9039	3.5	2.0	2.8	2.4	9059	chr2L	686923	intron	ds -	chr2L	691452	intron	ds -	chr2L	695982	intron	ds -	chr2L_9_690001	chr2L_690001	RAL-256
9	chr2L	770466	770489	chr2L	772246	772270	Bari1	5	1781	8.0	4.0	6.0	0.7	1804	chr2L	770466	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772270	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	RAL-256
12	chr2L	976878	976907	chr2L	984514	984543	roo	8	7636	2.0	0.0	1.0	4.0	7665	chr2L	976878	intergenic	not near genes	chr2L	980710	intergenic	not near genes	chr2L	984543	intergenic	not near genes	chr2L_8_980001	chr2L_980001	RAL-256
17	chr2L	1220132	1220157	chr2L	1227598	1227623	blood	7	7466	4.0	0.5	2.2	2.2	7491	chr2L	1220132	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227623	intron	CG42329 +	chr2L_7_1220001	chr2L_1220001	RAL-256
18	chr2L	1570685	1570719	chr2L	1573557	1573591	F-element	9	2872	3.5	2.5	3.0	2.2	2906	chr2L	1570685	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573591	intron	haf +	chr2L_9_1570001	chr2L_1570001	RAL-256
20	chr2L	1711370	1711388	chr2L	1711682	1711712	mdg3	6	317	0.5	5.5	3.0	1.5	342	chr2L	1711370	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711541	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_6_1710001	chr2L_1710001	RAL-256
25	chr2L	2100393	2100407	chr2L	2109530	2109554	roo	5	9147	3.0	2.5	2.8	1.3	9161	chr2L	2100393	intron	dpr3 -	chr2L	2104974	intron	dpr3 -	chr2L	2109554	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-256
29	chr2L	2661196	2661229	chr2L	2663034	2663067	I-element	6	1830	2.5	2.5	2.5	1.7	1871	chr2L	2661196	intergenic	not near genes	chr2L	2662132	intergenic	not near genes	chr2L	2663067	intergenic	not near genes	chr2L_6_2660001	chr2L_2660001	RAL-256
34	chr2L	3073029	3073051	chr2L	3078232	3078254	copia	8	5203	4.0	1.5	2.8	2.1	5225	chr2L	3073029	intron	toc -	chr2L	3075642	intron	toc -	chr2L	3078254	intron	toc -	chr2L_8_3075001	chr2L_3075001	RAL-256
49	chr2L	4066041	4066053	chr2L	4068866	4068878	Juan	5	2825	3.0	2.5	2.8	1.3	2837	chr2L	4066041	intron	ed +	chr2L	4067460	intron	ed +	chr2L	4068878	intron	ed +	chr2L_5_4065001	chr2L_4065001	RAL-256
54	chr2L	4601704	4601735	chr2L	4609145	4609176	mdg1	10	7440	5.5	2.0	3.8	2.1	7472	chr2L	4601704	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609176	intron	dp -	chr2L_10_4605001	chr2L_4605001	RAL-256
59	chr2L	4953518	4953534	chr2L	4953759	4953775	pogo	4	241	3.0	0.0	1.5	1.6	257	chr2L	4953518	intergenic	Jon25Bii -	chr2L	4953646	intergenic	not near genes	chr2L	4953775	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-256
65	chr2L	5827712	5827738	chr2L	5836718	5836746	roo	5	9007	2.0	2.0	2.0	1.7	9034	chr2L	5827712	intron	TrissinR +	chr2L	5832229	intron	TrissinR +	chr2L	5836746	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	RAL-256
71	chr2L	6426855	6426884	chr2L	6445115	6445143	roo	11	18259	2.5	4.5	3.5	2.4	18288	chr2L	6426855	3` UTR	CG9527 -	chr2L	6435999	intron	CG9527 -	chr2L	6445143	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	RAL-256
92	chr2L	7959044	7959054	chr2L	7960455	7960465	pogo	6	1411	2.5	0.5	1.5	2.4	1421	chr2L	7959044	intron	Snoo -	chr2L	7959754	intron	Snoo -	chr2L	7960465	intron	Snoo -	chr2L_6_7955001	chr2L_7955001	RAL-256
93	chr2L	7977091	7977110	chr2L	7984067	7984086	297	5	6976	3.0	3.0	3.0	1.2	6995	chr2L	7977091	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984086	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-256
101	chr2L	8723119	8723144	chr2L	8731496	8731520	Tirant	7	8376	2.5	3.0	2.8	1.8	8401	chr2L	8723119	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731520	intron	raw -	chr2L_7_8725001	chr2L_8725001	RAL-256
102	chr2L	9000281	9000310	chr2L	9007791	9007820	roo	6	7506	2.5	1.5	2.0	2.0	7539	chr2L	9000281	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007820	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RAL-256
107	chr2L	9217971	9218002	chr2L	9222758	9222789	Doc	9	4783	2.5	4.5	3.5	2.0	4818	chr2L	9217971	intron	tai +	chr2L	9220380	intron	tai +	chr2L	9222789	intron	tai +	chr2L_9_9220001	chr2L_9220001	RAL-256
110	chr2L	9393496	9393528	chr2L	9396463	9396495	jockey	10	2967	0.5	1.5	1.0	5.0	2999	chr2L	9393496	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396495	intron	Shawl -	chr2L_10_9390001	chr2L_9390001	RAL-256
115	chr2L	9973724	9973759	chr2L	9980843	9980878	HMS-Beagle	17	7117	4.0	5.5	4.8	2.9	7154	chr2L	9973724	intergenic	not near genes	chr2L	9977301	intergenic	not near genes	chr2L	9980878	intergenic	not near genes	chr2L_17_9975001	chr2L_9975001	RAL-256
123	chr2L	10156321	10156343	chr2L	10163791	10163812	blood	8	7468	1.0	2.5	1.8	2.9	7491	chr2L	10156321	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160066	intron	CG44153 -	chr2L	10163812	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	RAL-256
134	chr2L	10862847	10862875	chr2L	10864457	10864484	Rt1c	7	1610	6.5	5.0	5.8	1.0	1637	chr2L	10862847	3` UTR	CR43807 -	chr2L	10863666	intron	CR43807 -	chr2L	10864484	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	RAL-256
139	chr2L	10946950	10946974	chr2L	10956164	10956189	roo	8	9214	4.5	6.0	5.2	1.3	9239	chr2L	10946950	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956189	intron	dpr2 -	chr2L_8_10950001	chr2L_10950001	RAL-256
141	chr2L	11315268	11315272	chr2L	11317672	11317676	G2	4	2404	2.5	0.5	1.5	1.6	2408	chr2L	11315268	intergenic	not near genes	chr2L	11316472	intergenic	not near genes	chr2L	11317676	intergenic	not near genes	chr2L_4_11315001	chr2L_11315001	RAL-256
147	chr2L	11563639	11563668	chr2L	11568843	11568872	copia	5	5204	2.5	1.0	1.8	1.8	5233	chr2L	11563639	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568872	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-256
148	chr2L	11614050	11614086	chr2L	11615545	11615558	hopper2	5	1480	1.0	1.5	1.2	2.3	1508	chr2L	11614050	intron	kek2 +	chr2L	11614804	intron	kek2 +	chr2L	11615558	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-256
149	chr2L	11713508	11713539	chr2L	11720975	11721005	blood	6	7468	2.0	1.0	1.5	2.4	7497	chr2L	11713508	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721005	intergenic	CR44143 +	chr2L_6_11715001	chr2L_11715001	RAL-256
159	chr2L	12558328	12558344	chr2L	12565457	12565473	HMS-Beagle	5	7129	0.0	1.0	0.5	3.3	7145	chr2L	12558328	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565473	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	RAL-256
160	chr2L	12731063	12731093	chr2L	12735830	12735860	F-element	7	4767	1.5	1.5	1.5	2.8	4797	chr2L	12731063	intron	MRP +	chr2L	12733462	intron	MRP +	chr2L	12735860	intron	MRP +	chr2L_7_12730001	chr2L_12730001	RAL-256
162	chr2L	12739172	12739205	chr2L	12743953	12743984	Doc	7	4778	2.5	2.5	2.5	2.0	4812	chr2L	12739172	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12743984	exon	MRP +	chr2L_7_12740001	chr2L_12740001	RAL-256
164	chr2L	12861694	12861729	chr2L	12863161	12863196	hobo	11	1467	1.5	3.0	2.2	3.4	1502	chr2L	12861694	intergenic	not near genes	chr2L	12862445	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_11_12860001	chr2L_12860001	RAL-256
165	chr2L	12933850	12933871	chr2L	12941317	12941338	blood	5	7466	7.5	3.5	5.5	0.8	7488	chr2L	12933850	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941338	intergenic	not near genes	chr2L_5_12935001	chr2L_12935001	RAL-256
166	chr2L	13241958	13241969	chr2L	13244342	13244352	BS	5	2383	8.0	4.0	6.0	0.7	2394	chr2L	13241958	5` UTR	CR45330 +	chr2L	13243155	intron	CR45330 +	chr2L	13244352	5` UTR	CR45330 +	chr2L_5_13240001	chr2L_13240001	RAL-256
169	chr2L	13405646	13405683	chr2L	13410443	13410480	Doc	9	4797	3.5	1.0	2.2	2.8	4834	chr2L	13405646	exon	CG7110 +	chr2L	13408063	intron	CG7110 +	chr2L	13410480	intron	CG7110 +	chr2L_9_13405001	chr2L_13405001	RAL-256
170	chr2L	13449467	13449492	chr2L	13456903	13456928	Quasimodo	4	7436	1.5	2.5	2.0	1.3	7461	chr2L	13449467	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456928	intron	CG42784 +	chr2L_4_13450001	chr2L_13450001	RAL-256
171	chr2L	13481453	13481472	chr2L	13482060	13482079	jockey	4	606	1.5	2.5	2.0	1.3	626	chr2L	13481453	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482079	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-256
174	chr2L	13761814	13761833	chr2L	13762911	13762942	Doc	6	1103	1.0	0.0	0.5	4.0	1128	chr2L	13761814	intron	TM9SF4 +	chr2L	13762378	intron	TM9SF4 +	chr2L	13762942	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-256
175	chr2L	13853088	13853115	chr2L	13862238	13862265	roo	6	9149	2.0	4.0	3.0	1.5	9177	chr2L	13853088	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862265	intron	CenG1A +	chr2L_6_13855001	chr2L_13855001	RAL-256
186	chr2L	14803877	14803910	chr2L	14809080	14809113	copia	11	5202	1.0	2.5	1.8	3.9	5236	chr2L	14803877	intergenic	not near genes	chr2L	14806495	intergenic	not near genes	chr2L	14809113	intergenic	not near genes	chr2L_11_14805001	chr2L_14805001	RAL-256
187	chr2L	14889951	14889988	chr2L	14890376	14890413	jockey	16	425	3.0	2.0	2.5	4.6	462	chr2L	14889951	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890413	intergenic	not near genes	chr2L_16_14890001	chr2L_14890001	RAL-256
192	chr2L	15446054	15446083	chr2L	15453523	15453552	blood	5	7469	1.0	0.5	0.8	2.8	7498	chr2L	15446054	intergenic	not near genes	chr2L	15449803	intergenic	not near genes	chr2L	15453552	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-256
196	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	16	145889	21.5	21.5	21.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_16_16140001	chr2L_16140001	RAL-256
199	chr2L	16141173	16141192	chr2L	16146378	16146399	copia	7	5206	0.5	4.0	2.2	2.2	5226	chr2L	16141173	intergenic	not near genes	chr2L	16143786	intergenic	not near genes	chr2L	16146399	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-256
201	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	21.5	21.5	21.5	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-256
202	chr2L	16280259	16280286	chr2L	16281427	16281456	1360	9	1169	2.5	3.0	2.8	2.4	1197	chr2L	16280259	intron	crp -	chr2L	16280858	intron	crp -	chr2L	16281456	intron	crp -	chr2L_9_16280001	chr2L_16280001	RAL-256
204	chr2L	16958104	16958120	chr2L	16962892	16962908	Doc	5	4788	0.0	1.5	0.8	2.8	4804	chr2L	16958104	intergenic	not near genes	chr2L	16960506	intergenic	not near genes	chr2L	16962908	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-256
207	chr2L	17273188	17273217	chr2L	17277971	17278000	F-element	9	4779	3.5	2.0	2.8	2.4	4812	chr2L	17273188	intergenic	not near genes	chr2L	17275594	intergenic	not near genes	chr2L	17278000	intergenic	not near genes	chr2L_9_17275001	chr2L_17275001	RAL-256
215	chr2L	17819921	17819946	chr2L	17825124	17825149	copia	5	5202	3.0	2.5	2.8	1.3	5228	chr2L	17819921	intron	CadN2 -	chr2L	17822535	intron	CadN2 -	chr2L	17825149	intron	CadN2 -	chr2L_5_17820001	chr2L_17820001	RAL-256
219	chr2L	18051875	18051903	chr2L	18061022	18061050	roo	6	9147	3.5	1.0	2.2	1.9	9175	chr2L	18051875	intron	rdo +	chr2L	18056462	intron	rdo +	chr2L	18061050	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-256
226	chr2L	18408024	18408052	chr2L	18412808	18412835	Doc	5	4784	0.5	1.0	0.8	2.8	4811	chr2L	18408024	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412835	intergenic	not near genes	chr2L_5_18410001	chr2L_18410001	RAL-256
236	chr2L	19147375	19147401	chr2L	19154410	19154436	297	6	7035	2.0	0.5	1.2	2.7	7061	chr2L	19147375	intron	brat +	chr2L	19150906	intron	brat +	chr2L	19154436	intron	brat +	chr2L_6_19150001	chr2L_19150001	RAL-256
243	chr2L	19345023	19345035	chr2L	19357232	19357234	blood	5	12207	3.5	5.0	4.2	1.0	12211	chr2L	19345023	intron	dnt -	chr2L	19351128	intron	dnt -	chr2L	19357234	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-256
249	chr2L	19620097	19620131	chr2L	19621086	19621110	jockey	19	988	5.0	6.0	5.5	2.9	1013	chr2L	19620097	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621110	intron	Lar +	chr2L_19_19620001	chr2L_19620001	RAL-256
250	chr2L	19703536	19703567	chr2L	19712672	19712703	roo	12	9136	3.0	0.0	1.5	4.8	9167	chr2L	19703536	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712703	intron	Lar +	chr2L_12_19705001	chr2L_19705001	RAL-256
253	chr2L	19737353	19737389	chr2L	19740822	19740838	1360	12	3464	3.0	3.0	3.0	3.0	3485	chr2L	19737353	intergenic	Nf-YB +	chr2L	19739096	intergenic	not near genes	chr2L	19740838	intergenic	not near genes	chr2L_12_19735001	chr2L_19735001	RAL-256
254	chr2L	19762808	19762838	chr2L	19763050	19763078	pogo	4	242	2.5	1.0	1.8	1.4	270	chr2L	19762808	5` UTR	fbp -	chr2L	19762943	intron	fbp -	chr2L	19763078	intron	fbp -	chr2L_4_19760001	chr2L_19760001	RAL-256
257	chr2L	20272115	20272138	chr2L	20282826	20282849	copia	5	10711	2.0	1.5	1.8	1.8	10734	chr2L	20272115	intergenic	not near genes	chr2L	20277482	intergenic	not near genes	chr2L	20282849	intergenic	not near genes	chr2L_5_20275001	chr2L_20275001	RAL-256
261	chr2L	20576224	20576251	chr2L	20583692	20583719	blood	7	7467	0.5	2.5	1.5	2.8	7495	chr2L	20576224	intergenic	not near genes	chr2L	20579972	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-256
267	chr2L	20976647	20976668	chr2L	20981462	20981483	X-element	4	4814	2.0	1.5	1.8	1.4	4836	chr2L	20976647	intron	CG42238 -	chr2L	20979065	intron	CG42238 -	chr2L	20981483	intron	CG42238 -	chr2L_4_20975001	chr2L_20975001	RAL-256
269	chr2L	21020278	21020309	chr2L	21023954	21023986	NOF	7	3677	0.5	2.5	1.5	2.8	3708	chr2L	21020278	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023986	intron	CG42238 -	chr2L_7_21020001	chr2L_21020001	RAL-256
270	chr2L	21041145	21041162	chr2L	21049406	21049422	Tirant	4	8260	1.0	3.5	2.2	1.2	8277	chr2L	21041145	intron	CG42238 -	chr2L	21045284	intron	CG42238 -	chr2L	21049422	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-256
277	chr2L	21981686	21981714	chr2L	21990851	21990879	roo	10	9165	1.0	6.5	3.8	2.1	9193	chr2L	21981686	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990879	exon	CG2528 -	chr2L_10_21985001	chr2L_21985001	RAL-256
279	chr2L	22548932	22548940	chr2L	22550153	22550164	1360	4	1223	0.5	3.5	2.0	1.3	1232	chr2L	22548932	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550164	intergenic	CG17493 +	chr2L_4_22545001	chr2L_22545001	RAL-256
281	chr2R	529332	529354	chr2R	537957	537971	Max-element	5	8623	2.0	3.0	2.5	1.4	8639	chr2R	529332	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537971	intron	CG40378 +	chr2R_5_530001	chr2R_530001	RAL-256
282	chr2R	552754	552774	chr2R	553972	553991	1360	4	1218	3.5	2.5	3.0	1.0	1237	chr2R	552754	intron	CG40378 +	chr2R	553372	intron	CG40378 +	chr2R	553991	intron	CG40378 +	chr2R_4_550001	chr2R_550001	RAL-256
283	chr2R	552777	552788	chr2R	553969	553995	1360	4	1209	2.5	2.0	2.2	1.2	1218	chr2R	552777	intron	CG40378 +	chr2R	553386	intron	CG40378 +	chr2R	553995	intron	CG40378 +	chr2R_4_550001	chr2R_550001	RAL-256
284	chr2R	1082375	1082385	chr2R	1087148	1087161	Doc	4	4773	1.5	5.5	3.5	0.9	4786	chr2R	1082375	intron	rl +	chr2R	1084768	intron	rl +	chr2R	1087161	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-256
286	chr2R	4622955	4622987	chr2R	4624114	4624146	1360	12	1157	1.5	2.5	2.0	4.0	1191	chr2R	4622955	intergenic	CR44101 -	chr2R	4623550	intergenic	not near genes	chr2R	4624146	intergenic	not near genes	chr2R_12_4620001	chr2R_4620001	RAL-256
287	chr2R	4624643	4624671	chr2R	4626548	4626576	Bica	7	1903	2.0	0.5	1.2	3.2	1933	chr2R	4624643	intergenic	not near genes	chr2R	4625610	intergenic	not near genes	chr2R	4626576	intergenic	not near genes	chr2R_7_4625001	chr2R_4625001	RAL-256
288	chr2R	4750348	4750377	chr2R	4751505	4751533	1360	4	1156	1.0	2.5	1.8	1.4	1185	chr2R	4750348	intron	conu +	chr2R	4750940	intron	conu +	chr2R	4751533	intron	conu +	chr2R_4_4750001	chr2R_4750001	RAL-256
299	chr2R	5869274	5869300	chr2R	5874350	5874374	flea	8	5076	4.0	4.5	4.2	1.5	5100	chr2R	5869274	intergenic	not near genes	chr2R	5871824	intergenic	not near genes	chr2R	5874374	intergenic	not near genes	chr2R_8_5870001	chr2R_5870001	RAL-256
301	chr2R	6096727	6096751	chr2R	6101917	6101928	BS	8	5192	2.0	2.5	2.2	2.5	5201	chr2R	6096727	intron	EcR -	chr2R	6099328	intron	EcR -	chr2R	6101928	intron	EcR -	chr2R_8_6095001	chr2R_6095001	RAL-256
317	chr2R	7235832	7235850	chr2R	7240920	7240942	jockey	6	5091	3.5	6.5	5.0	1.0	5110	chr2R	7235832	intergenic	not near genes	chr2R	7238387	intergenic	not near genes	chr2R	7240942	intergenic	not near genes	chr2R_6_7235001	chr2R_7235001	RAL-256
320	chr2R	7608408	7608432	chr2R	7613611	7613635	I-element	7	5202	2.0	2.5	2.2	2.2	5227	chr2R	7608408	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613635	intron	CG1358 -	chr2R_7_7610001	chr2R_7610001	RAL-256
323	chr2R	7869192	7869208	chr2R	7873977	7873993	Doc	7	4786	3.5	4.5	4.0	1.4	4801	chr2R	7869192	intron	Dgk -	chr2R	7871592	intron	Dgk -	chr2R	7873993	intron	Dgk -	chr2R_7_7870001	chr2R_7870001	RAL-256
326	chr2R	8160934	8160953	chr2R	8161024	8161043	1360	8	90	3.0	9.5	6.2	1.1	109	chr2R	8160934	intron	CG8708 -	chr2R	8160988	intron	CG8708 -	chr2R	8161043	intron	CG8708 -	chr2R_8_8160001	chr2R_8160001	RAL-256
328	chr2R	8330862	8330880	chr2R	8331346	8331366	roo	4	486	3.5	0.5	2.0	1.3	504	chr2R	8330862	intron	pdm3 +	chr2R	8331114	intron	pdm3 +	chr2R	8331366	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-256
329	chr2R	8398216	8398243	chr2R	8402992	8403017	Doc	8	4776	4.0	1.0	2.5	2.3	4801	chr2R	8398216	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403017	intron	CG2121 -	chr2R_8_8400001	chr2R_8400001	RAL-256
334	chr2R	8566039	8566054	chr2R	8566991	8567006	1360	6	951	3.0	3.5	3.2	1.4	967	chr2R	8566039	5` UTR	Cyp6a14 -	chr2R	8566522	5` UTR	Cyp6a14 -	chr2R	8567006	5` UTR	Cyp6a14 -	chr2R_6_8565001	chr2R_8565001	RAL-256
337	chr2R	8722766	8722791	chr2R	8723005	8723032	pogo	8	238	4.0	9.0	6.5	1.1	266	chr2R	8722766	intron	CG14767 -	chr2R	8722899	intron	CG14767 -	chr2R	8723032	intron	CG14767 -	chr2R_8_8720001	chr2R_8720001	RAL-256
338	chr2R	9151317	9151334	chr2R	9157787	9157804	Burdock	4	6469	1.5	2.5	2.0	1.3	6487	chr2R	9151317	3` UTR	CG30345 +	chr2R	9154560	intergenic	not near genes	chr2R	9157804	intergenic	CG8008 -	chr2R_4_9150001	chr2R_9150001	RAL-256
339	chr2R	9212702	9212720	chr2R	9213186	9213190	roo	5	479	6.0	4.5	5.2	0.8	488	chr2R	9212702	intergenic	CR45309 +	chr2R	9212946	intergenic	CR45309 +	chr2R	9213190	5` UTR	CR45309 +	chr2R_5_9210001	chr2R_9210001	RAL-256
344	chr2R	9871038	9871063	chr2R	9871524	9871549	roo	5	482	1.0	2.0	1.5	2.0	511	chr2R	9871038	intron	cbx -	chr2R	9871294	intron	cbx -	chr2R	9871549	intron,5` UTR	cbx -,CG18446 +	chr2R_5_9870001	chr2R_9870001	RAL-256
345	chr2R	9945440	9945466	chr2R	9945625	9945662	BS	6	192	1.0	0.0	0.5	4.0	222	chr2R	9945440	intron	Mef2 -	chr2R	9945551	intron	Mef2 -	chr2R	9945662	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	RAL-256
346	chr2R	10005849	10005883	chr2R	10007012	10007029	1360	14	1161	3.0	3.5	3.2	3.3	1180	chr2R	10005849	intron	Pka-R2 -	chr2R	10006439	intron	Pka-R2 -	chr2R	10007029	intron	Pka-R2 -	chr2R_14_10005001	chr2R_10005001	RAL-256
355	chr2R	10585577	10585587	chr2R	10594160	10594170	Tirant	6	8583	0.0	2.5	1.2	2.7	8593	chr2R	10585577	intron	psq +	chr2R	10589874	intron	psq +	chr2R	10594170	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-256
357	chr2R	10948027	10948062	chr2R	10955576	10955612	17.6	14	7545	0.5	1.0	0.8	7.8	7585	chr2R	10948027	intergenic	not near genes	chr2R	10951820	intergenic	not near genes	chr2R	10955612	intergenic	not near genes	chr2R_14_10950001	chr2R_10950001	RAL-256
362	chr2R	11207823	11207844	chr2R	11208015	11208036	BS	5	192	3.5	0.5	2.0	1.7	213	chr2R	11207823	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208036	intron	shn +	chr2R_5_11205001	chr2R_11205001	RAL-256
363	chr2R	11415526	11415549	chr2R	11418675	11418698	opus	5	3149	1.5	3.5	2.5	1.4	3172	chr2R	11415526	intron	Drip -	chr2R	11417112	intron	Drip -	chr2R	11418698	intron	Drip -	chr2R_5_11415001	chr2R_11415001	RAL-256
370	chr2R	12481157	12481170	chr2R	12482942	12482966	roo	7	1789	2.5	3.0	2.8	1.8	1809	chr2R	12481157	exon	Dh44-R2 +	chr2R	12482062	intron	Dh44-R2 +	chr2R	12482966	intron	Dh44-R2 +	chr2R_7_12480001	chr2R_12480001	RAL-256
371	chr2R	12501694	12501727	chr2R	12503854	12503884	Rt1c	5	2154	4.5	5.5	5.0	0.8	2190	chr2R	12501694	intron	fdl -	chr2R	12502789	intron	fdl -	chr2R	12503884	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-256
378	chr2R	12789294	12789318	chr2R	12797657	12797679	roo	6	8361	4.0	1.5	2.8	1.6	8385	chr2R	12789294	intron,3` UTR	sca +,CR45137 -	chr2R	12793486	intron,intron	sca +,CR45137 -	chr2R	12797679	intron,3` UTR	sca +,CR45137 -	chr2R_6_12790001	chr2R_12790001	RAL-256
380	chr2R	12819453	12819477	chr2R	12824522	12824546	jockey	5	5066	2.0	0.5	1.2	2.3	5093	chr2R	12819453	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824546	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-256
382	chr2R	13136837	13136865	chr2R	13141635	13141651	Doc	6	4796	3.5	4.5	4.0	1.2	4814	chr2R	13136837	exon	Cap-G +	chr2R	13139244	intron	Cap-G +	chr2R	13141651	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RAL-256
387	chr2R	13580521	13580534	chr2R	13580852	13580884	jockey	5	345	0.0	5.5	2.8	1.3	363	chr2R	13580521	3` UTR	CG6191 -	chr2R	13580702	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580884	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-256
394	chr2R	14467291	14467325	chr2R	14476443	14476476	roo	10	9151	3.0	3.0	3.0	2.5	9185	chr2R	14467291	intergenic	not near genes	chr2R	14471884	intergenic	not near genes	chr2R	14476476	5` UTR	CR44462 +	chr2R_10_14470001	chr2R_14470001	RAL-256
401	chr2R	15004727	15004758	chr2R	15005056	15005087	jockey	8	329	2.0	2.0	2.0	2.7	360	chr2R	15004727	intergenic	not near genes	chr2R	15004907	intergenic	not near genes	chr2R	15005087	intergenic	not near genes	chr2R_8_15000001	chr2R_15000001	RAL-256
402	chr2R	15015455	15015486	chr2R	15022878	15022910	mdg1	8	7424	2.5	2.0	2.2	2.5	7455	chr2R	15015455	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022910	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RAL-256
403	chr2R	15084977	15084994	chr2R	15092026	15092042	297	4	7048	4.0	4.0	4.0	0.8	7065	chr2R	15084977	intergenic	not near genes	chr2R	15088510	intergenic	not near genes	chr2R	15092042	5` UTR	CR44457 +	chr2R_4_15085001	chr2R_15085001	RAL-256
404	chr2R	15119317	15119348	chr2R	15127797	15127829	Tirant	13	8480	2.5	2.5	2.5	3.7	8512	chr2R	15119317	intron	chn +	chr2R	15123573	intron	chn +	chr2R	15127829	intron	chn +	chr2R_13_15120001	chr2R_15120001	RAL-256
416	chr2R	17236513	17236541	chr2R	17241717	17241745	copia	5	5203	2.0	1.5	1.8	1.8	5232	chr2R	17236513	intron	mbl +	chr2R	17239129	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-256
420	chr2R	17784029	17784057	chr2R	17784270	17784298	pogo	13	239	2.0	5.0	3.5	2.9	269	chr2R	17784029	intergenic	mir-31a -	chr2R	17784164	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_13_17780001	chr2R_17780001	RAL-256
425	chr2R	18358395	18358418	chr2R	18372606	18372630	roo	8	14212	0.5	3.0	1.8	2.9	14235	chr2R	18358395	intergenic	not near genes	chr2R	18365512	intergenic	not near genes	chr2R	18372630	intergenic	not near genes	chr2R_8_18365001	chr2R_18365001	RAL-256
427	chr2R	18575814	18575831	chr2R	18582001	18582019	3S18	4	6187	2.0	3.0	2.5	1.1	6205	chr2R	18575814	intron	GEFmeso -	chr2R	18578916	intron	GEFmeso -	chr2R	18582019	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-256
429	chr2R	18590867	18590884	chr2R	18600019	18600036	roo	7	9151	5.0	2.0	3.5	1.6	9169	chr2R	18590867	intron	GEFmeso -	chr2R	18595452	intron	GEFmeso -	chr2R	18600036	intron	GEFmeso -	chr2R_7_18595001	chr2R_18595001	RAL-256
440	chr2R	19776598	19776630	chr2R	19779921	19779953	jockey	7	3323	2.5	2.0	2.2	2.2	3355	chr2R	19776598	intergenic	not near genes	chr2R	19778276	intergenic	not near genes	chr2R	19779953	intergenic	not near genes	chr2R_7_19775001	chr2R_19775001	RAL-256
448	chr2R	20783312	20783330	chr2R	20788084	20788102	F-element	4	4772	1.5	1.5	1.5	1.6	4790	chr2R	20783312	intergenic	not near genes	chr2R	20785707	intergenic	not near genes	chr2R	20788102	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-256
457	chr2R	21738275	21738311	chr2R	21747435	21747454	roo	6	9157	1.0	0.5	0.8	3.3	9179	chr2R	21738275	intergenic	not near genes	chr2R	21742864	intergenic	not near genes	chr2R	21747454	intergenic	not near genes	chr2R_6_21740001	chr2R_21740001	RAL-256
464	chr2R	22349694	22349718	chr2R	22351473	22351502	jockey	9	1780	4.5	0.0	2.2	2.8	1808	chr2R	22349694	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351502	intron	Liprin-gamma -	chr2R_9_22350001	chr2R_22350001	RAL-256
469	chr2R	22774963	22775001	chr2R	22775382	22775420	jockey	7	419	2.0	1.0	1.5	2.8	457	chr2R	22774963	intron	CG42260 -	chr2R	22775192	intron	CG42260 -	chr2R	22775420	intron	CG42260 -	chr2R_7_22775001	chr2R_22775001	RAL-256
470	chr2R	22843032	22843051	chr2R	22844993	22845013	flea	4	1962	0.5	2.5	1.5	1.6	1981	chr2R	22843032	intergenic	CG9826 +	chr2R	22844022	intergenic	not near genes	chr2R	22845013	intergenic	not near genes	chr2R_4_22840001	chr2R_22840001	RAL-256
488	chr2R	23914298	23914332	chr2R	23921921	23921936	412	13	7620	3.5	1.5	2.5	3.7	7638	chr2R	23914298	exon	kcc +	chr2R	23918117	intron	kcc +	chr2R	23921936	intron	kcc +	chr2R_13_23915001	chr2R_23915001	RAL-256
491	chr2R	24147067	24147098	chr2R	24154644	24154676	412	12	7576	4.0	8.0	6.0	1.7	7609	chr2R	24147067	intron	Dat +	chr2R	24150872	intron	Dat +	chr2R	24154676	intron	Dat +	chr2R_12_24150001	chr2R_24150001	RAL-256
495	chr2R	24353430	24353453	chr2R	24361792	24361815	roo	6	8361	1.5	3.5	2.5	1.7	8385	chr2R	24353430	intron,intron	bs +,CR44811 -	chr2R	24357622	intron,intron	bs +,CR44811 -	chr2R	24361815	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-256
504	chr2R	24727883	24727914	chr2R	24735390	24735422	mdg1	10	7507	4.0	5.5	4.8	1.7	7539	chr2R	24727883	intron	Mid1 -	chr2R	24731652	intron	Mid1 -	chr2R	24735422	intron	Mid1 -	chr2R_10_24730001	chr2R_24730001	RAL-256
505	chr2R	24763623	24763642	chr2R	24765594	24765616	G2	14	1972	4.5	6.0	5.2	2.3	1993	chr2R	24763623	exon	CG3894 +	chr2R	24764620	intron	CG3894 +	chr2R	24765616	exon	CG3894 +	chr2R_14_24760001	chr2R_24760001	RAL-256
513	chr3L	402689	402706	chr3L	409742	409753	297	6	7052	6.5	5.0	5.8	0.9	7064	chr3L	402689	intergenic	not near genes	chr3L	406221	intergenic	not near genes	chr3L	409753	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-256
520	chr3L	858002	858029	chr3L	866482	866510	Tirant	8	8475	2.5	2.0	2.2	2.5	8508	chr3L	858002	intergenic	not near genes	chr3L	862256	intergenic	not near genes	chr3L	866510	5` UTR	CG12502 +	chr3L_8_860001	chr3L_860001	RAL-256
524	chr3L	925179	925201	chr3L	932605	932626	mdg1	6	7426	2.0	3.5	2.8	1.6	7447	chr3L	925179	intron	Glut1 +	chr3L	928902	intron	Glut1 +	chr3L	932626	intron	Glut1 +	chr3L_6_925001	chr3L_925001	RAL-256
526	chr3L	939777	939802	chr3L	940898	940902	jockey	5	1116	3.0	3.5	3.2	1.2	1125	chr3L	939777	intron	Glut1 +	chr3L	940340	intron	Glut1 +	chr3L	940902	intron	Glut1 +	chr3L_5_940001	chr3L_940001	RAL-256
530	chr3L	1047354	1047384	chr3L	1055163	1055196	412	6	7802	0.0	2.0	1.0	3.0	7842	chr3L	1047354	intron	bab1 -	chr3L	1051275	intron	bab1 -	chr3L	1055196	intron	bab1 -	chr3L_6_1050001	chr3L_1050001	RAL-256
534	chr3L	1154137	1154163	chr3L	1163287	1163312	roo	5	9149	0.5	1.0	0.8	2.8	9175	chr3L	1154137	intron	bab2 -	chr3L	1158724	intron	bab2 -	chr3L	1163312	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-256
535	chr3L	1219594	1219622	chr3L	1227327	1227355	412	12	7731	2.5	2.5	2.5	3.4	7761	chr3L	1219594	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227355	intron	mwh +	chr3L_12_1220001	chr3L_1220001	RAL-256
541	chr3L	1506008	1506032	chr3L	1513605	1513629	17.6	11	7596	1.0	5.0	3.0	2.8	7621	chr3L	1506008	intron,intron	Psa +,cue -	chr3L	1509818	intron,intron	Psa +,cue -	chr3L	1513629	intron,intron	Psa +,cue -	chr3L_11_1505001	chr3L_1505001	RAL-256
552	chr3L	2447510	2447537	chr3L	2456666	2456692	roo	7	9154	1.5	6.0	3.8	1.5	9182	chr3L	2447510	intron	CG45186 +	chr3L	2452101	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-256
560	chr3L	3281454	3281475	chr3L	3281933	3281970	Doc	14	491	3.5	7.0	5.2	2.3	516	chr3L	3281454	intron	CG12017 +	chr3L	3281712	intron	CG12017 +	chr3L	3281970	intron	CG12017 +	chr3L_14_3280001	chr3L_3280001	RAL-256
563	chr3L	3475079	3475111	chr3L	3475522	3475555	jockey	9	444	3.0	5.5	4.2	1.7	476	chr3L	3475079	intron	CG42324 +	chr3L	3475317	intron	CG42324 +	chr3L	3475555	intron	CG42324 +	chr3L_9_3475001	chr3L_3475001	RAL-256
566	chr3L	3601299	3601330	chr3L	3606610	3606641	copia	6	5310	4.0	1.0	2.5	1.7	5342	chr3L	3601299	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606641	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RAL-256
580	chr3L	4901136	4901152	chr3L	4907325	4907342	diver	4	6190	1.0	0.5	0.8	2.2	6206	chr3L	4901136	intergenic	CG13704 +	chr3L	4904239	intergenic	not near genes	chr3L	4907342	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-256
582	chr3L	5034156	5034167	chr3L	5043308	5043319	roo	6	9151	3.5	0.0	1.8	2.1	9163	chr3L	5034156	intron	Con -	chr3L	5038738	intron	Con -	chr3L	5043319	intron	Con -	chr3L_6_5035001	chr3L_5035001	RAL-256
583	chr3L	5045468	5045486	chr3L	5050249	5050266	Doc	5	4781	1.5	0.5	1.0	2.5	4798	chr3L	5045468	intron	Con -	chr3L	5047867	intron	Con -	chr3L	5050266	intron	Con -	chr3L_5_5045001	chr3L_5045001	RAL-256
597	chr3L	5926337	5926349	chr3L	5926507	5926525	BS	4	174	3.0	5.0	4.0	0.8	188	chr3L	5926337	intron	Vap-33B +	chr3L	5926431	intron	Vap-33B +	chr3L	5926525	intron	Vap-33B +	chr3L_4_5925001	chr3L_5925001	RAL-256
600	chr3L	6220913	6220948	chr3L	6230064	6230097	roo	10	9152	1.5	2.0	1.8	3.6	9184	chr3L	6220913	5` UTR	pncr008:3L +	chr3L	6225505	intergenic	not near genes	chr3L	6230097	intergenic	not near genes	chr3L_10_6225001	chr3L_6225001	RAL-256
603	chr3L	6855937	6855955	chr3L	6860721	6860737	Doc	5	4783	0.5	3.5	2.0	1.7	4800	chr3L	6855937	intergenic	not near genes	chr3L	6858337	intergenic	not near genes	chr3L	6860737	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-256
610	chr3L	7377316	7377345	chr3L	7380421	7380450	297	6	3104	1.0	3.0	2.0	2.0	3134	chr3L	7377316	intron	SMSr -	chr3L	7378883	intron	SMSr -	chr3L	7380450	intron	SMSr -	chr3L_6_7375001	chr3L_7375001	RAL-256
616	chr3L	7985362	7985391	chr3L	7987690	7987719	NOF	5	2327	4.0	2.0	3.0	1.2	2357	chr3L	7985362	intron	nmo +	chr3L	7986540	intron	nmo +	chr3L	7987719	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-256
619	chr3L	8481800	8481806	chr3L	8490930	8490961	roo	8	9146	2.5	2.0	2.2	2.5	9161	chr3L	8481800	intron	CG43163 -	chr3L	8486380	intron	CG43163 -	chr3L	8490961	intron	CG43163 -	chr3L_8_8485001	chr3L_8485001	RAL-256
623	chr3L	9076926	9076959	chr3L	9084486	9084519	412	6	7560	2.5	2.0	2.2	1.9	7593	chr3L	9076926	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084519	exon	Tequila +	chr3L_6_9080001	chr3L_9080001	RAL-256
624	chr3L	9130564	9130580	chr3L	9134323	9134341	412	7	3760	3.5	5.5	4.5	1.3	3777	chr3L	9130564	intergenic	bol -	chr3L	9132452	intergenic	not near genes	chr3L	9134341	intergenic	Dhpr +	chr3L_7_9130001	chr3L_9130001	RAL-256
625	chr3L	9219244	9219274	chr3L	9219915	9219946	jockey	10	667	7.0	5.0	6.0	1.4	702	chr3L	9219244	intergenic	not near genes	chr3L	9219595	intergenic	not near genes	chr3L	9219946	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-256
626	chr3L	9575905	9575942	chr3L	9580983	9581015	jockey	10	5077	3.0	1.5	2.2	3.1	5110	chr3L	9575905	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581015	intron	CG42673 +	chr3L_10_9575001	chr3L_9575001	RAL-256
632	chr3L	9929680	9929695	chr3L	9938461	9938476	roo	4	8780	2.5	3.5	3.0	1.0	8796	chr3L	9929680	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938476	intron	CG34356 +	chr3L_4_9930001	chr3L_9930001	RAL-256
641	chr3L	10414958	10414972	chr3L	10417328	10417344	Doc	6	2371	0.0	3.5	1.8	2.1	2386	chr3L	10414958	intergenic	CG12362 +	chr3L	10416151	intergenic	not near genes	chr3L	10417344	intergenic	not near genes	chr3L_6_10415001	chr3L_10415001	RAL-256
648	chr3L	11264470	11264499	chr3L	11271422	11271450	17.6	4	6947	2.5	1.5	2.0	1.3	6980	chr3L	11264470	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271450	intergenic	not near genes	chr3L_4_11265001	chr3L_11265001	RAL-256
652	chr3L	11564791	11564807	chr3L	11572415	11572432	412	4	7623	4.5	5.0	4.8	0.7	7641	chr3L	11564791	exon	CG33267 +	chr3L	11568612	intron	CG33267 +	chr3L	11572432	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-256
657	chr3L	11864562	11864582	chr3L	11865857	11865877	pogo	6	1295	2.0	1.0	1.5	2.4	1315	chr3L	11864562	intron	CG44837 -	chr3L	11865220	intron	CG44837 -	chr3L	11865877	intron	CG44837 -	chr3L_6_11865001	chr3L_11865001	RAL-256
666	chr3L	12874930	12874954	chr3L	12877222	12877246	jockey	4	2292	3.0	0.0	1.5	1.6	2316	chr3L	12874930	intergenic	not near genes	chr3L	12876088	intergenic	not near genes	chr3L	12877246	intergenic	not near genes	chr3L_4_12875001	chr3L_12875001	RAL-256
670	chr3L	12919274	12919302	chr3L	12924747	12924775	Rt1c	5	5473	4.0	2.5	3.2	1.2	5501	chr3L	12919274	intergenic	not near genes	chr3L	12922024	intergenic	not near genes	chr3L	12924775	intergenic	not near genes	chr3L_5_12920001	chr3L_12920001	RAL-256
671	chr3L	12957785	12957817	chr3L	12962267	12962298	copia	9	4481	1.0	1.0	1.0	4.5	4513	chr3L	12957785	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	RAL-256
677	chr3L	13525156	13525187	chr3L	13532951	13532983	roo	5	7793	2.5	2.0	2.2	1.6	7827	chr3L	13525156	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532983	intergenic	not near genes	chr3L_5_13525001	chr3L_13525001	RAL-256
686	chr3L	14296005	14296011	chr3L	14296474	14296497	roo	4	481	3.0	3.5	3.2	1.0	492	chr3L	14296005	intron	fz +	chr3L	14296251	intron	fz +	chr3L	14296497	intron	fz +	chr3L_4_14295001	chr3L_14295001	RAL-256
687	chr3L	14312023	14312052	chr3L	14316837	14316851	X-element	7	4810	2.5	3.0	2.8	1.8	4828	chr3L	14312023	exon	fz +	chr3L	14314437	intron	fz +	chr3L	14316851	intron	fz +	chr3L_7_14310001	chr3L_14310001	RAL-256
693	chr3L	14721182	14721210	chr3L	14723025	14723045	Rt1c	9	1840	3.5	6.5	5.0	1.5	1863	chr3L	14721182	intron	ome +	chr3L	14722114	intron	ome +	chr3L	14723045	intron	ome +	chr3L_9_14720001	chr3L_14720001	RAL-256
698	chr3L	15085049	15085078	chr3L	15086215	15086231	1360	6	1163	1.0	2.0	1.5	2.4	1182	chr3L	15085049	intron	cp309 -	chr3L	15085640	intron	cp309 -	chr3L	15086231	intron	cp309 -	chr3L_6_15085001	chr3L_15085001	RAL-256
707	chr3L	15899235	15899260	chr3L	15899785	15899827	jockey	6	560	0.0	2.0	1.0	3.0	592	chr3L	15899235	intergenic	pHCl -	chr3L	15899531	intergenic	not near genes	chr3L	15899827	intergenic	sff -	chr3L_6_15895001	chr3L_15895001	RAL-256
710	chr3L	16184109	16184117	chr3L	16188928	16188936	X-element	4	4819	2.0	2.5	2.2	1.2	4827	chr3L	16184109	intergenic	not near genes	chr3L	16186522	intergenic	not near genes	chr3L	16188936	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	RAL-256
713	chr3L	16493974	16493992	chr3L	16494491	16494508	jockey	7	517	4.0	3.5	3.8	1.5	534	chr3L	16493974	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494241	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494508	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_7_16490001	chr3L_16490001	RAL-256
715	chr3L	16616516	16616539	chr3L	16621844	16621867	297	4	5328	0.5	0.5	0.5	2.7	5351	chr3L	16616516	3` UTR	Abl -	chr3L	16619192	3` UTR	Abl -	chr3L	16621867	3` UTR	Abl -	chr3L_4_16615001	chr3L_16615001	RAL-256
720	chr3L	16945735	16945755	chr3L	16954884	16954908	roo	6	9150	7.0	4.0	5.5	0.9	9173	chr3L	16945735	exon	Obp73a +	chr3L	16950322	intergenic	not near genes	chr3L	16954908	5` UTR	Nc73EF +	chr3L_6_16950001	chr3L_16950001	RAL-256
723	chr3L	17516990	17517013	chr3L	17524548	17524571	412	7	7556	3.0	5.5	4.2	1.3	7581	chr3L	17516990	intron	CG7564 +	chr3L	17520780	intron	CG7564 +	chr3L	17524571	3` UTR	CG7564 +	chr3L_7_17520001	chr3L_17520001	RAL-256
743	chr3L	18772411	18772439	chr3L	18781092	18781120	roo	12	8681	0.0	2.0	1.0	6.0	8709	chr3L	18772411	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781120	intron	ftz-f1 -	chr3L_12_18775001	chr3L_18775001	RAL-256
744	chr3L	18833782	18833796	chr3L	18834946	18834958	1360	6	1164	3.0	4.5	3.8	1.2	1176	chr3L	18833782	intron	Indy -	chr3L	18834370	intron	Indy -	chr3L	18834958	intron	Indy -	chr3L_6_18830001	chr3L_18830001	RAL-256
748	chr3L	19008849	19008858	chr3L	19009187	19009196	jockey	4	338	1.0	5.0	3.0	1.0	347	chr3L	19008849	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009196	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-256
751	chr3L	19115645	19115672	chr3L	19115820	19115828	BS	8	174	5.5	1.0	3.2	1.9	183	chr3L	19115645	intron	CG14082 -	chr3L	19115736	intron	CG14082 -	chr3L	19115828	intron	CG14082 -	chr3L_8_19115001	chr3L_19115001	RAL-256
752	chr3L	19117052	19117074	chr3L	19124493	19124521	mdg1	14	7446	3.5	1.5	2.5	4.0	7469	chr3L	19117052	intron	CG14082 -	chr3L	19120786	intron	CG14082 -	chr3L	19124521	intron	CG14082 -	chr3L_14_19120001	chr3L_19120001	RAL-256
754	chr3L	19208064	19208086	chr3L	19209438	19209459	Doc	5	1373	3.0	6.5	4.8	0.9	1395	chr3L	19208064	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209459	intron	fz2 -	chr3L_5_19205001	chr3L_19205001	RAL-256
758	chr3L	19861822	19861850	chr3L	19863610	19863638	S-element	4	1788	0.5	0.0	0.2	3.3	1816	chr3L	19861822	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863638	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-256
764	chr3L	20257334	20257356	chr3L	20258454	20258476	pogo	5	1117	1.0	2.5	1.8	1.8	1142	chr3L	20257334	intron	rdgC +	chr3L	20257905	intron	rdgC +	chr3L	20258476	intron	rdgC +	chr3L_5_20255001	chr3L_20255001	RAL-256
767	chr3L	20476764	20476783	chr3L	20484363	20484380	springer	4	7598	1.5	2.0	1.8	1.4	7616	chr3L	20476764	3` UTR	isoQC +	chr3L	20480572	intergenic	not near genes	chr3L	20484380	3` UTR	ZnT77C -	chr3L_4_20480001	chr3L_20480001	RAL-256
774	chr3L	21014919	21014926	chr3L	21023398	21023407	Tirant	6	8480	4.5	4.0	4.2	1.2	8488	chr3L	21014919	intron	skd -	chr3L	21019163	intron	skd -	chr3L	21023407	intron	skd -	chr3L_6_21015001	chr3L_21015001	RAL-256
775	chr3L	21014929	21014948	chr3L	21023395	21023427	Tirant	6	8478	2.0	3.5	2.8	1.6	8498	chr3L	21014929	intron	skd -	chr3L	21019178	intron	skd -	chr3L	21023427	intron	skd -	chr3L_6_21015001	chr3L_21015001	RAL-256
778	chr3L	21151864	21151896	chr3L	21156946	21156980	flea	6	5084	2.5	0.0	1.2	2.7	5116	chr3L	21151864	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21156980	intron	Ac78C -	chr3L_6_21150001	chr3L_21150001	RAL-256
780	chr3L	21498834	21498863	chr3L	21500469	21500482	1360	9	1634	3.0	4.0	3.5	2.0	1648	chr3L	21498834	intron	Glg1 -	chr3L	21499658	intron	Glg1 -	chr3L	21500482	intron	Glg1 -	chr3L_9_21495001	chr3L_21495001	RAL-256
784	chr3L	22099695	22099703	chr3L	22105872	22105889	3S18	4	6184	1.5	2.0	1.8	1.4	6194	chr3L	22099695	intergenic	not near genes	chr3L	22102792	intergenic	not near genes	chr3L	22105889	intergenic	not near genes	chr3L_4_22100001	chr3L_22100001	RAL-256
791	chr3L	22555771	22555780	chr3L	22563239	22563246	blood	5	7467	3.0	1.5	2.2	1.6	7475	chr3L	22555771	intergenic	not near genes	chr3L	22559508	intergenic	not near genes	chr3L	22563246	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-256
792	chr3L	22555786	22555793	chr3L	22563238	22563238	blood	4	7454	3.5	1.5	2.5	1.1	7452	chr3L	22555786	intergenic	not near genes	chr3L	22559512	intergenic	not near genes	chr3L	22563238	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-256
794	chr3L	22577625	22577649	chr3L	22582408	22582436	Doc	7	4787	2.0	3.0	2.5	2.0	4811	chr3L	22577625	intergenic	not near genes	chr3L	22580030	intergenic	not near genes	chr3L	22582436	3` UTR	CG14459 -	chr3L_7_22580001	chr3L_22580001	RAL-256
795	chr3L	22617197	22617207	chr3L	22624647	22624659	blood	5	7452	5.0	2.0	3.5	1.1	7462	chr3L	22617197	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624659	intron	CG14459 -	chr3L_5_22620001	chr3L_22620001	RAL-256
796	chr3L	22631932	22631952	chr3L	22897039	22897059	Ivk	5	265107	19.0	4.0	11.5	0.4	265127	chr3L	22631932	intron	CG14459 -	chr3L	22764496	intron	SPoCk +	chr3L	22897059	intergenic	CR44688 +	chr3L_5_22760001	chr3L_22760001	RAL-256
798	chr3L	22761389	22761417	chr3L	22766823	22766851	Ivk	7	5433	1.0	1.5	1.2	3.2	5462	chr3L	22761389	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766851	intron	SPoCk +	chr3L_7_22760001	chr3L_22760001	RAL-256
799	chr3L	22865981	22866007	chr3L	22867114	22867140	Doc	5	1133	2.5	2.0	2.2	1.6	1159	chr3L	22865981	intron	CG33170 +	chr3L	22866560	intron	CG33170 +	chr3L	22867140	intron	CG33170 +	chr3L_5_22865001	chr3L_22865001	RAL-256
800	chr3L	22632833	22632845	chr3L	22896973	22896987	Ivk	6	264142	17.0	8.5	12.8	0.4	264154	chr3L	22632833	intron	CG14459 -	chr3L	22764910	intron	SPoCk +	chr3L	22896987	intergenic	CR44688 +	chr3L_6_22760001	chr3L_22760001	RAL-256
806	chr3L	23290485	23290502	chr3L	23295315	23295334	X-element	5	4831	3.5	2.5	3.0	1.2	4849	chr3L	23290485	intergenic	not near genes	chr3L	23292910	intergenic	not near genes	chr3L	23295334	intergenic	not near genes	chr3L_5_23290001	chr3L_23290001	RAL-256
809	chr3L	24168792	24168818	chr3L	24176119	24176146	ZAM	6	7328	6.0	6.5	6.2	0.8	7354	chr3L	24168792	intron	Snap25 +	chr3L	24172469	intron	Snap25 +	chr3L	24176146	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	RAL-256
820	chr3L	27727640	27727656	chr3L	27728747	27728753	G-element	4	1104	4.5	4.0	4.2	0.8	1113	chr3L	27727640	intergenic	not near genes	chr3L	27728196	intergenic	not near genes	chr3L	27728753	intergenic	not near genes	chr3L_4_27725001	chr3L_27725001	RAL-256
822	chr3R	2447006	2447017	chr3R	2449584	2449595	Burdock	4	2579	40.0	14.5	27.2	0.1	2589	chr3R	2447006	intergenic	not near genes	chr3R	2448300	intergenic	not near genes	chr3R	2449595	intergenic	not near genes	chr3R_4_2445001	chr3R_2445001	RAL-256
826	chr3R	4609551	4609577	chr3R	4610715	4610740	1360	4	1164	1.5	2.5	2.0	1.3	1189	chr3R	4609551	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610740	intergenic	not near genes	chr3R_4_4610001	chr3R_4610001	RAL-256
830	chr3R	4753240	4753273	chr3R	4757542	4757565	F-element	10	4300	5.5	7.0	6.2	1.4	4325	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755402	intron,intron	atms +,CG44098 -	chr3R	4757565	intron,exon	atms +,CG44098 -	chr3R_10_4755001	chr3R_4755001	RAL-256
831	chr3R	4759719	4759749	chr3R	4761216	4761246	hopper2	7	1497	1.0	6.0	3.5	1.6	1527	chr3R	4759719	intron,intron	atms +,CG44098 -	chr3R	4760482	intron,intron	atms +,CG44098 -	chr3R	4761246	intron,intron	atms +,CG44098 -	chr3R_7_4760001	chr3R_4760001	RAL-256
833	chr3R	4887487	4887511	chr3R	4894864	4894888	rover	4	7377	2.5	3.0	2.8	1.1	7401	chr3R	4887487	intergenic	not near genes	chr3R	4891188	intergenic	not near genes	chr3R	4894888	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-256
834	chr3R	5067979	5068006	chr3R	5073496	5073523	mdg3	5	5517	2.5	2.5	2.5	1.4	5544	chr3R	5067979	intergenic	not near genes	chr3R	5070751	intergenic	not near genes	chr3R	5073523	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	RAL-256
836	chr3R	5338404	5338429	chr3R	5343581	5343606	Rt1c	7	5176	2.5	4.5	3.5	1.6	5202	chr3R	5338404	intron	mtd -	chr3R	5341005	intron	mtd -	chr3R	5343606	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-256
839	chr3R	5746024	5746042	chr3R	5746264	5746283	pogo	8	241	1.5	3.5	2.5	2.3	259	chr3R	5746024	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746283	3` UTR	Madm +	chr3R_8_5745001	chr3R_5745001	RAL-256
840	chr3R	5809115	5809140	chr3R	5809356	5809381	pogo	4	241	2.5	1.0	1.8	1.4	266	chr3R	5809115	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809381	3` UTR	CG11000 +	chr3R_4_5805001	chr3R_5805001	RAL-256
842	chr3R	5927569	5927591	chr3R	5927809	5927831	pogo	5	240	1.5	0.5	1.0	2.5	262	chr3R	5927569	intron	CG34113 -	chr3R	5927700	intron	CG34113 -	chr3R	5927831	intron	CG34113 -	chr3R_5_5925001	chr3R_5925001	RAL-256
844	chr3R	6015965	6015992	chr3R	6024446	6024473	Tirant	7	8481	1.5	3.5	2.5	2.0	8508	chr3R	6015965	intergenic	not near genes	chr3R	6020219	intergenic	not near genes	chr3R	6024473	intergenic	not near genes	chr3R_7_6020001	chr3R_6020001	RAL-256
846	chr3R	6158511	6158539	chr3R	6167094	6167122	Tirant	7	8583	2.0	2.5	2.2	2.2	8611	chr3R	6158511	intergenic	not near genes	chr3R	6162816	intergenic	not near genes	chr3R	6167122	intergenic	CG1077 +	chr3R_7_6160001	chr3R_6160001	RAL-256
850	chr3R	6737504	6737531	chr3R	6739285	6739318	Doc	8	1786	4.0	2.5	3.2	1.9	1814	chr3R	6737504	intron	pb -	chr3R	6738411	intron	pb -	chr3R	6739318	intron	pb -	chr3R_8_6735001	chr3R_6735001	RAL-256
858	chr3R	7729471	7729497	chr3R	7737404	7737435	Stalker2	10	7936	1.5	2.5	2.0	3.3	7964	chr3R	7729471	intergenic	not near genes	chr3R	7733453	intergenic	not near genes	chr3R	7737435	intergenic	not near genes	chr3R_10_7730001	chr3R_7730001	RAL-256
863	chr3R	8101779	8101793	chr3R	8104863	8104877	G2	4	3084	4.5	1.5	3.0	1.0	3098	chr3R	8101779	exon	CG7900 +	chr3R	8103328	intron	CG7900 +	chr3R	8104877	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-256
868	chr3R	8403005	8403037	chr3R	8412171	8412201	roo	15	9164	3.5	6.5	5.0	2.5	9196	chr3R	8403005	intron	CG45263 -	chr3R	8407603	intron	CG45263 -	chr3R	8412201	intron	CG45263 -	chr3R_15_8405001	chr3R_8405001	RAL-256
871	chr3R	8601776	8601799	chr3R	8610929	8610952	roo	4	9152	2.5	3.0	2.8	1.1	9176	chr3R	8601776	intron	5-HT2B +	chr3R	8606364	intron	5-HT2B +	chr3R	8610952	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	RAL-256
873	chr3R	8707364	8707385	chr3R	8709803	8709826	jockey	6	2441	4.5	3.5	4.0	1.2	2462	chr3R	8707364	intergenic	not near genes	chr3R	8708595	intergenic	not near genes	chr3R	8709826	intergenic	not near genes	chr3R_6_8705001	chr3R_8705001	RAL-256
904	chr3R	11379236	11379265	chr3R	11388391	11388420	roo	7	9155	3.0	1.0	2.0	2.3	9184	chr3R	11379236	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388420	intron	pros +	chr3R_7_11380001	chr3R_11380001	RAL-256
908	chr3R	11841060	11841098	chr3R	11846251	11846289	BS	10	5186	3.0	2.0	2.5	2.9	5229	chr3R	11841060	intron	CG6959 -	chr3R	11843674	intron	CG6959 -	chr3R	11846289	intron	CG6959 -	chr3R_10_11840001	chr3R_11840001	RAL-256
922	chr3R	12920161	12920174	chr3R	12925359	12925367	copia	4	5199	3.0	2.0	2.5	1.1	5206	chr3R	12920161	intron	beat-Vb +	chr3R	12922764	intron	beat-Vb +	chr3R	12925367	intron	beat-Vb +	chr3R_4_12920001	chr3R_12920001	RAL-256
926	chr3R	13135826	13135856	chr3R	13138001	13138031	pogo	6	2175	1.5	1.0	1.2	2.7	2205	chr3R	13135826	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138031	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13135001	chr3R_13135001	RAL-256
927	chr3R	13143049	13143066	chr3R	13148615	13148642	mdg3	6	5568	0.5	7.0	3.8	1.2	5593	chr3R	13143049	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145846	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148642	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13145001	chr3R_13145001	RAL-256
949	chr3R	15132060	15132081	chr3R	15135120	15135141	Juan	4	3060	4.5	4.0	4.2	0.8	3081	chr3R	15132060	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135141	3` UTR	CG6912 -	chr3R_4_15130001	chr3R_15130001	RAL-256
953	chr3R	15601175	15601194	chr3R	15608697	15608716	412	10	7521	4.0	5.5	4.8	1.7	7541	chr3R	15601175	intergenic	not near genes	chr3R	15604946	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_10_15600001	chr3R_15600001	RAL-256
955	chr3R	15618750	15618760	chr3R	15626224	15626234	blood	6	7473	0.0	3.0	1.5	2.4	7484	chr3R	15618750	intergenic	not near genes	chr3R	15622492	intergenic	not near genes	chr3R	15626234	intergenic	not near genes	chr3R_6_15620001	chr3R_15620001	RAL-256
962	chr3R	16756320	16756353	chr3R	16762511	16762544	diver	10	6189	1.5	1.5	1.5	4.0	6224	chr3R	16756320	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762544	intron	bxd -	chr3R_10_16755001	chr3R_16755001	RAL-256
967	chr3R	17294686	17294696	chr3R	17295111	17295124	BS	6	427	2.5	3.5	3.0	1.5	438	chr3R	17294686	intergenic	not near genes	chr3R	17294905	intergenic	not near genes	chr3R	17295124	intergenic	not near genes	chr3R_6_17290001	chr3R_17290001	RAL-256
970	chr3R	17346694	17346708	chr3R	17348257	17348271	F-element	5	1562	1.0	2.5	1.8	1.8	1577	chr3R	17346694	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348271	intron	beat-IIa -	chr3R_5_17345001	chr3R_17345001	RAL-256
974	chr3R	17925865	17925889	chr3R	17927322	17927356	hobo	7	1465	4.0	7.5	5.8	1.0	1491	chr3R	17925865	intron	cpo +	chr3R	17926610	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_7_17925001	chr3R_17925001	RAL-256
999	chr3R	20156695	20156715	chr3R	20165865	20165885	roo	6	9170	1.0	3.0	2.0	2.0	9190	chr3R	20156695	intergenic	not near genes	chr3R	20161290	intergenic	not near genes	chr3R	20165885	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-256
1000	chr3R	20506600	20506610	chr3R	20507403	20507413	BS	5	803	2.0	3.5	2.8	1.3	813	chr3R	20506600	intergenic	Or92a +	chr3R	20507006	intergenic	CG4288 -	chr3R	20507413	3` UTR	CG4288 -	chr3R_5_20505001	chr3R_20505001	RAL-256
1005	chr3R	21141675	21141700	chr3R	21150156	21150181	Tirant	6	8480	4.0	2.5	3.2	1.4	8506	chr3R	21141675	intron	SNF4Agamma +	chr3R	21145928	intron	SNF4Agamma +	chr3R	21150181	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	RAL-256
1010	chr3R	21761131	21761141	chr3R	21768523	21768531	mdg1	5	7390	6.0	5.0	5.5	0.8	7400	chr3R	21761131	exon	CG42335 +	chr3R	21764831	intron	CG42335 +	chr3R	21768531	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-256
1011	chr3R	21761143	21761152	chr3R	21768518	21768518	mdg1	6	7377	3.5	3.5	3.5	1.3	7375	chr3R	21761143	exon	CG42335 +	chr3R	21764830	intron	CG42335 +	chr3R	21768518	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-256
1023	chr3R	22234702	22234715	chr3R	22236021	22236034	pogo	5	1319	1.0	2.0	1.5	2.0	1332	chr3R	22234702	intron	SKIP +	chr3R	22235368	intron	SKIP +	chr3R	22236034	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	RAL-256
1025	chr3R	22450542	22450578	chr3R	22453182	22453216	NOF	7	2640	2.5	3.5	3.0	1.8	2674	chr3R	22450542	intron	CG34376 +	chr3R	22451879	intron	CG34376 +	chr3R	22453216	intron	CG34376 +	chr3R_7_22450001	chr3R_22450001	RAL-256
1043	chr3R	23558399	23558426	chr3R	23560180	23560207	Bari1	7	1781	0.5	1.0	0.8	3.9	1808	chr3R	23558399	intron	beat-IV +	chr3R	23559303	intron	beat-IV +	chr3R	23560207	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	RAL-256
1044	chr3R	23684695	23684728	chr3R	23685180	23685214	roo	13	482	4.0	10.0	7.0	1.6	519	chr3R	23684695	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685214	exon	CG18754 +	chr3R_13_23680001	chr3R_23680001	RAL-256
1049	chr3R	24207217	24207245	chr3R	24212292	24212321	flea	5	5073	3.5	3.0	3.2	1.2	5104	chr3R	24207217	intron	twin -	chr3R	24209769	intron	twin -	chr3R	24212321	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-256
1052	chr3R	24493278	24493297	chr3R	24493507	24493526	BS	4	229	2.0	3.0	2.5	1.1	248	chr3R	24493278	intergenic	not near genes	chr3R	24493402	intergenic	not near genes	chr3R	24493526	intergenic	not near genes	chr3R_4_24490001	chr3R_24490001	RAL-256
1055	chr3R	24730101	24730118	chr3R	24732470	24732496	Doc	5	2376	1.5	0.0	0.8	2.8	2395	chr3R	24730101	intron	tok +	chr3R	24731298	intron	tok +	chr3R	24732496	intron	tok +	chr3R_5_24730001	chr3R_24730001	RAL-256
1057	chr3R	24927138	24927151	chr3R	24931928	24931942	Doc	7	4790	2.5	3.0	2.8	1.8	4804	chr3R	24927138	intergenic	Trf4-2 +	chr3R	24929540	intergenic	not near genes	chr3R	24931942	intergenic	CG11771 +	chr3R_7_24925001	chr3R_24925001	RAL-256
1066	chr3R	25832690	25832714	chr3R	25841872	25841896	roo	10	9177	5.5	3.5	4.5	1.8	9206	chr3R	25832690	exon	alpha4GT2 +	chr3R	25837293	intron	alpha4GT2 +	chr3R	25841896	exon	alpha4GT2 +	chr3R_10_25835001	chr3R_25835001	RAL-256
1071	chr3R	26376330	26376352	chr3R	26385489	26385512	roo	6	9158	4.5	0.5	2.5	1.7	9182	chr3R	26376330	intergenic	not near genes	chr3R	26380921	intergenic	not near genes	chr3R	26385512	intergenic	not near genes	chr3R_6_26380001	chr3R_26380001	RAL-256
1077	chr3R	26810557	26810586	chr3R	26811042	26811071	roo	5	485	1.5	4.5	3.0	1.2	514	chr3R	26810557	intron	Tl +	chr3R	26810814	intron	Tl +	chr3R	26811071	intron	Tl +	chr3R_5_26810001	chr3R_26810001	RAL-256
1080	chr3R	27140514	27140546	chr3R	27148124	27148154	412	4	7610	2.5	2.0	2.2	1.2	7640	chr3R	27140514	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148154	intron	CG6051 -	chr3R_4_27140001	chr3R_27140001	RAL-256
1084	chr3R	27342795	27342821	chr3R	27351376	27351402	Tirant	6	8581	2.0	2.0	2.0	2.0	8607	chr3R	27342795	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351402	intron	CG42534 +	chr3R_6_27345001	chr3R_27345001	RAL-256
1094	chr3R	27856766	27856779	chr3R	27858249	27858262	hopper2	5	1482	8.5	3.5	6.0	0.7	1496	chr3R	27856766	intron	CG34353 -	chr3R	27857514	intron	CG34353 -	chr3R	27858262	intron	CG34353 -	chr3R_5_27855001	chr3R_27855001	RAL-256
1095	chr3R	27862952	27862983	chr3R	27868257	27868288	Transpac	8	5303	3.5	0.5	2.0	2.7	5336	chr3R	27862952	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868288	intron	CG34353 -	chr3R_8_27865001	chr3R_27865001	RAL-256
1096	chr3R	27875713	27875728	chr3R	27882768	27882783	297	6	7055	2.5	3.5	3.0	1.5	7070	chr3R	27875713	intron	CG34353 -	chr3R	27879248	intron	CG34353 -	chr3R	27882783	intron	CG34353 -	chr3R_6_27875001	chr3R_27875001	RAL-256
1098	chr3R	28253338	28253369	chr3R	28255848	28255879	jockey	8	2509	3.0	3.5	3.2	1.9	2541	chr3R	28253338	intergenic	not near genes	chr3R	28254608	intergenic	not near genes	chr3R	28255879	intergenic	not near genes	chr3R_8_28250001	chr3R_28250001	RAL-256
1107	chr3R	28758287	28758304	chr3R	28763904	28763921	roo	5	5617	2.0	0.5	1.2	2.3	5634	chr3R	28758287	intergenic	aqrs -	chr3R	28761104	intergenic	not near genes	chr3R	28763921	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	RAL-256
1109	chr3R	28792874	28792904	chr3R	28797967	28797997	jockey	7	5094	1.5	3.0	2.2	2.2	5123	chr3R	28792874	intergenic	not near genes	chr3R	28795436	intergenic	not near genes	chr3R	28797997	intergenic	not near genes	chr3R_7_28795001	chr3R_28795001	RAL-256
1115	chr3R	29079380	29079404	chr3R	29080752	29080776	NOF	4	1372	4.0	3.0	3.5	0.9	1396	chr3R	29079380	intron	CG11873 +	chr3R	29080078	intron	CG11873 +	chr3R	29080776	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-256
1120	chr3R	29406617	29406644	chr3R	29407903	29407930	jockey	8	1282	3.0	2.5	2.8	2.1	1313	chr3R	29406617	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407930	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	RAL-256
1130	chr3R	30084852	30084883	chr3R	30086319	30086350	hobo	6	1466	3.0	3.0	3.0	1.5	1498	chr3R	30084852	intron	sima +	chr3R	30085601	intron	sima +	chr3R	30086350	intron	sima +	chr3R_6_30085001	chr3R_30085001	RAL-256
1135	chr3R	30317330	30317358	chr3R	30324922	30324948	roo	8	7592	0.5	1.5	1.0	4.0	7618	chr3R	30317330	intron	hdc +	chr3R	30321139	intron	hdc +	chr3R	30324948	intron	hdc +	chr3R_8_30320001	chr3R_30320001	RAL-256
1141	chr3R	30480474	30480510	chr3R	30482942	30482978	jockey	9	2467	4.0	4.0	4.0	1.8	2504	chr3R	30480474	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482978	intron	PH4alphaEFB +	chr3R_9_30480001	chr3R_30480001	RAL-256
1149	chr3R	30679522	30679551	chr3R	30686989	30687019	blood	10	7468	1.0	3.0	2.0	3.3	7497	chr3R	30679522	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687019	intergenic	not near genes	chr3R_10_30680001	chr3R_30680001	RAL-256
1159	chr3R	31074221	31074234	chr3R	31081829	31081842	springer	6	7608	3.0	0.0	1.5	2.4	7621	chr3R	31074221	intron	Sox100B +	chr3R	31078032	intron	Sox100B +	chr3R	31081842	intron	Sox100B +	chr3R_6_31075001	chr3R_31075001	RAL-256
1163	chr3R	31279379	31279405	chr3R	31285569	31285581	diver	5	6187	2.5	4.5	3.5	1.1	6202	chr3R	31279379	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285581	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-256
1166	chr3R	31413088	31413121	chr3R	31418288	31418321	copia	11	5200	2.0	0.0	1.0	5.5	5233	chr3R	31413088	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418321	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-256
1177	chr3R	31691554	31691562	chr3R	31696303	31696328	Doc	4	4761	3.5	6.0	4.8	0.7	4774	chr3R	31691554	intergenic	not near genes	chr3R	31693941	intergenic	not near genes	chr3R	31696328	intergenic	not near genes	chr3R_4_31690001	chr3R_31690001	RAL-256
1180	chr4	671603	671636	chr4	680186	680219	Tirant	6	8580	0.5	2.0	1.2	2.7	8616	chr4	671603	intron	CG11360 +	chr4	675911	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_6_675001	chr4_675001	RAL-256
1183	chrX	551442	551449	chrX	558993	559011	412	4	7559	4.0	3.0	3.5	0.9	7569	chrX	551442	intron	Appl +	chrX	555226	intron	Appl +	chrX	559011	intron	Appl +	chrX_4_555001	chrX_555001	RAL-256
1188	chrX	906708	906721	chrX	908496	908509	S-element	5	1788	2.5	4.0	3.2	1.2	1801	chrX	906708	intron	CG43867 -	chrX	907608	intron	CG43867 -	chrX	908509	intron	CG43867 -	chrX_5_905001	chrX_905001	RAL-256
1192	chrX	1627976	1628001	chrX	1635444	1635467	gtwin	11	7467	3.0	3.0	3.0	2.8	7491	chrX	1627976	intron,intron	Mur2B -,br +	chrX	1631722	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_11_1630001	chrX_1630001	RAL-256
1194	chrX	1954886	1954912	chrX	1962826	1962834	Stalker2	4	7934	2.5	1.0	1.8	1.4	7948	chrX	1954886	intron	Hr4 +	chrX	1958860	intron	Hr4 +	chrX	1962834	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-256
1197	chrX	2399836	2399864	chrX	2408188	2408216	roo	8	8348	5.0	0.0	2.5	2.3	8380	chrX	2399836	intergenic	not near genes	chrX	2404026	intergenic	not near genes	chrX	2408216	intergenic	not near genes	chrX_8_2400001	chrX_2400001	RAL-256
1200	chrX	2844896	2844912	chrX	2852306	2852321	mdg1	4	7410	2.0	2.0	2.0	1.3	7425	chrX	2844896	intron	kirre +	chrX	2848608	intron	kirre +	chrX	2852321	intron	kirre +	chrX_4_2845001	chrX_2845001	RAL-256
1204	chrX	3415031	3415048	chrX	3421216	3421233	3S18	4	6185	0.5	2.0	1.2	1.8	6202	chrX	3415031	intron,intron	CR44999 +,CG12535 -	chrX	3418132	intron,intron	CR44999 +,CG12535 -	chrX	3421233	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-256
1206	chrX	3493090	3493114	chrX	3502248	3502273	roo	7	9158	2.0	1.0	1.5	2.8	9183	chrX	3493090	intron,intron	CR44999 +,Gas8 -	chrX	3497682	intron,intron	CR44999 +,Gas8 -	chrX	3502273	intron,intron	CR44999 +,Gas8 -	chrX_7_3495001	chrX_3495001	RAL-256
1208	chrX	3597552	3597576	chrX	3619718	3619744	roo	12	22168	3.0	0.0	1.5	4.8	22192	chrX	3597552	intron	AstA-R1 +	chrX	3608648	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	RAL-256
1211	chrX	3726760	3726788	chrX	3730157	3730163	NOF	5	3392	1.0	2.5	1.8	1.8	3403	chrX	3726760	intron	tlk +	chrX	3728462	intron	tlk +	chrX	3730163	intron	tlk +	chrX_5_3725001	chrX_3725001	RAL-256
1215	chrX	4731813	4731831	chrX	4736906	4736924	jockey	4	5093	5.0	2.0	3.5	0.9	5111	chrX	4731813	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736924	intergenic	not near genes	chrX_4_4730001	chrX_4730001	RAL-256
1216	chrX	1562990	1562991	chrX	4805476	4805477	opus	8	3242486	14.5	14.0	14.2	0.5	3242487	chrX	1562990	intron	Mur2B -	chrX	3184234	intron	dnc +	chrX	4805477	3` UTR	CR45516 -	chrX_8_3180001	chrX_3180001	RAL-256
1218	chrX	4827970	4828002	chrX	4835339	4835357	Stalker4	6	7364	2.0	4.0	3.0	1.5	7387	chrX	4827970	intergenic	not near genes	chrX	4831664	intergenic	not near genes	chrX	4835357	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-256
1223	chrX	5883679	5883841	chrX	5883789	5884082	pogo	8	207	2.5	3.5	3.0	2.0	403	chrX	5883679	intron	CR45668 -	chrX	5883880	intron	CR45668 -	chrX	5884082	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-256
1227	chrX	6335216	6335239	chrX	6337726	6337749	Tirant	6	2510	0.0	2.0	1.0	3.0	2533	chrX	6335216	intergenic	not near genes	chrX	6336482	intergenic	not near genes	chrX	6337749	intergenic	CG3842 +	chrX_6_6335001	chrX_6335001	RAL-256
1228	chrX	6562821	6562851	chrX	6571303	6571333	Tirant	13	8480	1.5	5.5	3.5	2.9	8512	chrX	6562821	intron	CG34417 +	chrX	6567077	intron	CG34417 +	chrX	6571333	intron	CG34417 +	chrX_13_6565001	chrX_6565001	RAL-256
1233	chrX	7023599	7023630	chrX	7030989	7031018	Tabor	5	7390	1.0	2.5	1.8	1.8	7419	chrX	7023599	intron	CG12541 -	chrX	7027308	intron	CG12541 -	chrX	7031018	intron	CG12541 -	chrX_5_7025001	chrX_7025001	RAL-256
1235	chrX	7125252	7125277	chrX	7134410	7134435	roo	4	9158	1.5	3.0	2.2	1.2	9183	chrX	7125252	intergenic	not near genes	chrX	7129844	intergenic	not near genes	chrX	7134435	intergenic	not near genes	chrX_4_7125001	chrX_7125001	RAL-256
1237	chrX	7845729	7845759	chrX	7847220	7847250	hopper2	5	1491	2.0	0.5	1.2	2.3	1521	chrX	7845729	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847250	intergenic	not near genes	chrX_5_7845001	chrX_7845001	RAL-256
1241	chrX	8922327	8922354	chrX	8922761	8922788	jockey	9	432	4.0	2.0	3.0	2.2	461	chrX	8922327	intron	rdgA +	chrX	8922558	intron	rdgA +	chrX	8922788	intron	rdgA +	chrX_9_8920001	chrX_8920001	RAL-256
1243	chrX	9508132	9508154	chrX	9509650	9509672	jockey	7	1518	5.0	1.5	3.2	1.7	1540	chrX	9508132	intron	CG32700 -	chrX	9508902	intron	CG32700 -	chrX	9509672	intron	CG32700 -	chrX_7_9505001	chrX_9505001	RAL-256
1245	chrX	9575790	9575800	chrX	9576114	9576124	mdg3	4	324	7.5	4.5	6.0	0.6	334	chrX	9575790	intron,exon	CG32699 -,CG42395 -	chrX	9575957	intron,intron	CG32699 -,CG42395 -	chrX	9576124	intron,exon	CG32699 -,CG42395 -	chrX_4_9575001	chrX_9575001	RAL-256
1246	chrX	9575801	9575822	chrX	9576113	9576142	mdg3	9	320	3.0	4.5	3.8	1.9	341	chrX	9575801	intron,exon	CG32699 -,CG42395 -	chrX	9575972	intron,intron	CG32699 -,CG42395 -	chrX	9576142	intron,5` UTR	CG32699 -,CG42395 -	chrX_9_9575001	chrX_9575001	RAL-256
1247	chrX	10138217	10138242	chrX	10145720	10145746	412	4	7503	1.0	1.5	1.2	1.8	7529	chrX	10138217	intron,intron	RhoU +,CR44894 -	chrX	10141982	intron,intron	RhoU +,CR44894 -	chrX	10145746	intron,intron	RhoU +,CR44894 -	chrX_4_10140001	chrX_10140001	RAL-256
1251	chrX	10550853	10550886	chrX	10552320	10552324	hobo	8	1463	4.5	3.0	3.8	1.7	1471	chrX	10550853	intron	spri -	chrX	10551588	intron	spri -	chrX	10552324	intron	spri -	chrX_8_10550001	chrX_10550001	RAL-256
1253	chrX	11268562	11268591	chrX	11270055	11270066	hopper2	7	1489	0.5	6.5	3.5	1.6	1504	chrX	11268562	intron	CG44422 -	chrX	11269314	intron	CG44422 -	chrX	11270066	intron	CG44422 -	chrX_7_11265001	chrX_11265001	RAL-256
1254	chrX	11312063	11312087	chrX	11319409	11319438	Stalker2	4	7348	1.5	3.5	2.5	1.1	7375	chrX	11312063	intergenic	not near genes	chrX	11315750	intergenic	not near genes	chrX	11319438	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-256
1255	chrX	11633422	11633449	chrX	11640476	11640503	297	4	7054	1.5	1.5	1.5	1.6	7081	chrX	11633422	intron	Ptp10D +	chrX	11636962	intron	Ptp10D +	chrX	11640503	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-256
1265	chrX	12301955	12301981	chrX	12303261	12303287	X-element	6	1306	3.5	1.5	2.5	1.7	1332	chrX	12301955	intron	Ten-a +	chrX	12302621	intron	Ten-a +	chrX	12303287	intron	Ten-a +	chrX_6_12300001	chrX_12300001	RAL-256
1270	chrX	13429461	13429488	chrX	13430610	13430637	jockey	8	1148	0.5	1.0	0.8	4.4	1176	chrX	13429461	intergenic	not near genes	chrX	13430049	intergenic	not near genes	chrX	13430637	intergenic	not near genes	chrX_8_13430001	chrX_13430001	RAL-256
1274	chrX	14105027	14105054	chrX	14114178	14114205	roo	9	9151	4.5	3.5	4.0	1.8	9178	chrX	14105027	intergenic	not near genes	chrX	14109616	intergenic	not near genes	chrX	14114205	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-256
1278	chrX	14636472	14636495	chrX	14641913	14641920	I-element	7	5437	3.5	3.0	3.2	1.7	5448	chrX	14636472	intron	NetA -	chrX	14639196	intron	NetA -	chrX	14641920	intron	NetA -	chrX_7_14635001	chrX_14635001	RAL-256
1280	chrX	15273725	15273736	chrX	15274874	15274892	1360	5	1158	2.5	5.0	3.8	1.0	1167	chrX	15273725	intergenic	not near genes	chrX	15274308	intergenic	not near genes	chrX	15274892	intergenic	not near genes	chrX_5_15270001	chrX_15270001	RAL-256
1281	chrX	15413051	15413077	chrX	15417353	15417378	Juan	5	4301	4.5	2.5	3.5	1.1	4327	chrX	15413051	intron	Cngl -	chrX	15415214	intron	Cngl -	chrX	15417378	intron	Cngl -	chrX_5_15415001	chrX_15415001	RAL-256
1285	chrX	16936008	16936032	chrX	16936426	16936450	jockey	5	418	1.0	0.5	0.8	2.8	442	chrX	16936008	intron	CG4928 +	chrX	16936229	intron	CG4928 +	chrX	16936450	intron	CG4928 +	chrX_5_16935001	chrX_16935001	RAL-256
1294	chrX	18194070	18194102	chrX	18194605	18194637	BS	5	535	0.5	1.5	1.0	2.5	567	chrX	18194070	intron	Frq2 +	chrX	18194354	intron	Frq2 +	chrX	18194637	intron	Frq2 +	chrX_5_18190001	chrX_18190001	RAL-256
1296	chrX	18429495	18429522	chrX	18434805	18434833	Transpac	4	5311	0.5	2.0	1.2	1.8	5338	chrX	18429495	intergenic	not near genes	chrX	18432164	intergenic	not near genes	chrX	18434833	intergenic	not near genes	chrX_4_18430001	chrX_18430001	RAL-256
1303	chrX	19472148	19472153	chrX	19472705	19472721	jockey	4	563	1.5	5.0	3.2	1.0	573	chrX	19472148	intergenic	kek5 +	chrX	19472434	intergenic	not near genes	chrX	19472721	intergenic	not near genes	chrX_4_19470001	chrX_19470001	RAL-256
1306	chrX	19710074	19710104	chrX	19711857	19711887	S-element	13	1783	1.5	2.5	2.0	4.3	1813	chrX	19710074	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711887	intron	meso18E -	chrX_13_19710001	chrX_19710001	RAL-256
1313	chrX	20377329	20377349	chrX	20378779	20378816	hobo	6	1464	2.0	2.0	2.0	2.0	1487	chrX	20377329	intergenic	not near genes	chrX	20378072	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-256
1316	chrX	20504128	20504145	chrX	20505644	20505666	transib2	4	1518	2.0	2.5	2.2	1.2	1538	chrX	20504128	intron	RhoGAP19D -	chrX	20504897	intron	RhoGAP19D -	chrX	20505666	intron	RhoGAP19D -	chrX_4_20500001	chrX_20500001	RAL-256
1318	chrX	20940718	20940751	chrX	20942187	20942219	hobo	10	1468	5.5	1.5	3.5	2.2	1501	chrX	20940718	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942219	intergenic	not near genes	chrX_10_20940001	chrX_20940001	RAL-256