SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47480 47489 chr2L 52585 52594 jockey 7 5105 4.0 3.5 3.8 1.5 5114 chr2L 47480 intron Cda5 - chr2L 50037 intron Cda5 - chr2L 52594 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-256 2 chr2L 134860 134871 chr2L 134948 134955 5 87 5.0 0.5 2.8 1.3 95 chr2L 134860 intron CG11455 + chr2L 134908 intron CG11455 + chr2L 134955 intron CG11455 + chr2L_5_130001 chr2L_130001 RAL-256 3 chr2L 179459 179490 chr2L 179542 179572 7 82 2.0 0.0 1.0 3.5 113 chr2L 179459 intron spen + chr2L 179516 intron spen + chr2L 179572 intron spen + chr2L_7_175001 chr2L_175001 RAL-256 4 chr2L 395744 395766 chr2L 395826 395848 6 80 2.0 4.0 3.0 1.5 104 chr2L 395744 intergenic CR43718 + chr2L 395796 intergenic CR43718 + chr2L 395848 intergenic CR43718 + chr2L_6_395001 chr2L_395001 RAL-256 5 chr2L 395769 395774 chr2L 395823 395856 4 72 1.5 3.5 2.5 1.1 87 chr2L 395769 intergenic CR43718 + chr2L 395812 intergenic CR43718 + chr2L 395856 intergenic CR43718 + chr2L_4_395001 chr2L_395001 RAL-256 6 chr2L 590337 590340 chr2L 590429 590432 4 92 1.5 1.5 1.5 1.6 95 chr2L 590337 intron Gsc - chr2L 590384 intron Gsc - chr2L 590432 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-256 7 chr2L 620323 620352 chr2L 620405 620434 6 82 0.5 3.0 1.8 2.1 111 chr2L 620323 3` UTR lectin-21Cb - chr2L 620378 3` UTR lectin-21Cb - chr2L 620434 exon lectin-21Cb - chr2L_6_620001 chr2L_620001 RAL-256 8 chr2L 686923 686942 chr2L 695958 695982 roo 9 9039 3.5 2.0 2.8 2.4 9059 chr2L 686923 intron ds - chr2L 691452 intron ds - chr2L 695982 intron ds - chr2L_9_690001 chr2L_690001 RAL-256 9 chr2L 770466 770489 chr2L 772246 772270 Bari1 5 1781 8.0 4.0 6.0 0.7 1804 chr2L 770466 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772270 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-256 10 chr2L 877846 877865 chr2L 877927 877939 10 80 6.5 2.5 4.5 1.8 93 chr2L 877846 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877939 3` UTR,intron CG15824 -,ninaA + chr2L_10_875001 chr2L_875001 RAL-256 11 chr2L 964558 964574 chr2L 964642 964658 8 84 2.5 4.0 3.2 1.9 100 chr2L 964558 intergenic not near genes chr2L 964608 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_8_960001 chr2L_960001 RAL-256 12 chr2L 976878 976907 chr2L 984514 984543 roo 8 7636 2.0 0.0 1.0 4.0 7665 chr2L 976878 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-256 13 chr2L 1023019 1023033 chr2L 1023099 1023112 9 79 6.0 6.0 6.0 1.3 93 chr2L 1023019 intron IA-2 - chr2L 1023066 intron IA-2 - chr2L 1023112 intron IA-2 - chr2L_9_1020001 chr2L_1020001 RAL-256 14 chr2L 1028849 1028873 chr2L 1028944 1028972 7 95 3.0 4.0 3.5 1.6 123 chr2L 1028849 intron IA-2 - chr2L 1028910 intron IA-2 - chr2L 1028972 intron IA-2 - chr2L_7_1025001 chr2L_1025001 RAL-256 15 chr2L 1035564 1035591 chr2L 1035641 1035668 7 76 1.0 0.5 0.8 3.9 104 chr2L 1035564 intron IA-2 - chr2L 1035616 intron IA-2 - chr2L 1035668 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-256 16 chr2L 1066093 1066123 chr2L 1066174 1066204 6 80 3.5 2.5 3.0 1.5 111 chr2L 1066093 intron S - chr2L 1066148 intron S - chr2L 1066204 intron S - chr2L_6_1065001 chr2L_1065001 RAL-256 17 chr2L 1220132 1220157 chr2L 1227598 1227623 blood 7 7466 4.0 0.5 2.2 2.2 7491 chr2L 1220132 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227623 intron CG42329 + chr2L_7_1220001 chr2L_1220001 RAL-256 18 chr2L 1570685 1570719 chr2L 1573557 1573591 F-element 9 2872 3.5 2.5 3.0 2.2 2906 chr2L 1570685 intron haf + chr2L 1572138 intron haf + chr2L 1573591 intron haf + chr2L_9_1570001 chr2L_1570001 RAL-256 19 chr2L 1687025 1687059 chr2L 1687103 1687137 11 78 2.0 1.5 1.8 3.9 112 chr2L 1687025 intron chinmo + chr2L 1687081 intron chinmo + chr2L 1687137 intron chinmo + chr2L_11_1685001 chr2L_1685001 RAL-256 20 chr2L 1711370 1711388 chr2L 1711682 1711712 mdg3 6 317 0.5 5.5 3.0 1.5 342 chr2L 1711370 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711541 3` UTR frtz - chr2L 1711712 3` UTR frtz - chr2L_6_1710001 chr2L_1710001 RAL-256 21 chr2L 1872179 1872353 chr2L 1872276 1872483 13 120 1.5 0.5 1.0 6.5 304 chr2L 1872179 intron CG31663 - chr2L 1872331 intron CG31663 - chr2L 1872483 intron CG31663 - chr2L_13_1870001 chr2L_1870001 RAL-256 22 chr2L 1883418 1883447 chr2L 1884000 1884027 4 580 0.5 0.5 0.5 2.7 609 chr2L 1883418 intron CG15358 - chr2L 1883722 intron CG15358 - chr2L 1884027 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-256 23 chr2L 1956165 1956172 chr2L 1956242 1956249 4 77 0.5 0.5 0.5 2.7 84 chr2L 1956165 intron erm - chr2L 1956207 intron erm - chr2L 1956249 intron erm - chr2L_4_1955001 chr2L_1955001 RAL-256 24 chr2L 2097053 2097083 chr2L 2097300 2097329 7 244 2.0 1.5 1.8 2.5 276 chr2L 2097053 intron dpr3 - chr2L 2097191 intron dpr3 - chr2L 2097329 intron dpr3 - chr2L_7_2095001 chr2L_2095001 RAL-256 25 chr2L 2100393 2100407 chr2L 2109530 2109554 roo 5 9147 3.0 2.5 2.8 1.3 9161 chr2L 2100393 intron dpr3 - chr2L 2104974 intron dpr3 - chr2L 2109554 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-256 26 chr2L 2250418 2250426 chr2L 2251185 2251191 4 766 7.5 0.0 3.8 0.8 773 chr2L 2250418 intergenic Ser12 - chr2L 2250804 exon Ser12 - chr2L 2251191 exon Ser12 - chr2L_4_2250001 chr2L_2250001 RAL-256 27 chr2L 2260732 2260758 chr2L 2260807 2260812 5 71 2.5 1.5 2.0 1.7 80 chr2L 2260732 intergenic not near genes chr2L 2260772 intergenic not near genes chr2L 2260812 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-256 28 chr2L 2626333 2626351 chr2L 2626833 2626859 4 506 3.0 1.0 2.0 1.3 526 chr2L 2626333 3` UTR CR45705 - chr2L 2626596 3` UTR CR45705 - chr2L 2626859 3` UTR CR45705 - chr2L_4_2625001 chr2L_2625001 RAL-256 29 chr2L 2661196 2661229 chr2L 2663034 2663067 I-element 6 1830 2.5 2.5 2.5 1.7 1871 chr2L 2661196 intergenic not near genes chr2L 2662132 intergenic not near genes chr2L 2663067 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-256 30 chr2L 2667626 2667658 chr2L 2667705 2667732 15 77 3.5 2.0 2.8 3.9 106 chr2L 2667626 intergenic not near genes chr2L 2667679 intergenic not near genes chr2L 2667732 intergenic not near genes chr2L_15_2665001 chr2L_2665001 RAL-256 31 chr2L 2804254 2804268 chr2L 2804343 2804357 4 89 4.5 8.5 6.5 0.5 103 chr2L 2804254 intergenic not near genes chr2L 2804306 intergenic not near genes chr2L 2804357 intergenic not near genes chr2L_4_2800001 chr2L_2800001 RAL-256 32 chr2L 2932448 2932470 chr2L 2932903 2932927 7 457 4.5 0.0 2.2 2.2 479 chr2L 2932448 intron lilli + chr2L 2932688 intron lilli + chr2L 2932927 intron lilli + chr2L_7_2930001 chr2L_2930001 RAL-256 33 chr2L 3026216 3026250 chr2L 3026872 3026906 17 656 26.0 36.5 31.2 0.5 690 chr2L 3026216 3` UTR CG3542 + chr2L 3026561 3` UTR CG3605 - chr2L 3026906 exon CG3605 - chr2L_17_3025001 chr2L_3025001 RAL-256 34 chr2L 3073029 3073051 chr2L 3078232 3078254 copia 8 5203 4.0 1.5 2.8 2.1 5225 chr2L 3073029 intron toc - chr2L 3075642 intron toc - chr2L 3078254 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-256 35 chr2L 3108868 3108894 chr2L 3108945 3108971 13 75 1.0 1.5 1.2 5.9 103 chr2L 3108868 intron toc - chr2L 3108920 intron toc - chr2L 3108971 intron toc - chr2L_13_3105001 chr2L_3105001 RAL-256 36 chr2L 3147274 3147301 chr2L 3147351 3147378 9 76 5.0 3.5 4.2 1.7 104 chr2L 3147274 3` UTR Mad - chr2L 3147326 3` UTR Mad - chr2L 3147378 3` UTR Mad - chr2L_9_3145001 chr2L_3145001 RAL-256 37 chr2L 3172073 3172101 chr2L 3172167 3172195 7 94 5.0 8.5 6.8 0.9 122 chr2L 3172073 intergenic not near genes chr2L 3172134 intergenic not near genes chr2L 3172195 intergenic not near genes chr2L_7_3170001 chr2L_3170001 RAL-256 38 chr2L 3228456 3228471 chr2L 3228539 3228554 6 83 0.0 2.5 1.2 2.7 98 chr2L 3228456 intergenic not near genes chr2L 3228505 intergenic not near genes chr2L 3228554 intergenic not near genes chr2L_6_3225001 chr2L_3225001 RAL-256 39 chr2L 3236712 3236744 chr2L 3236797 3236829 13 85 3.0 2.0 2.5 3.7 117 chr2L 3236712 intergenic not near genes chr2L 3236770 intergenic not near genes chr2L 3236829 intergenic not near genes chr2L_13_3235001 chr2L_3235001 RAL-256 40 chr2L 3260709 3260719 chr2L 3260849 3260858 5 140 3.0 3.0 3.0 1.2 149 chr2L 3260709 intergenic CR45337 - chr2L 3260784 intergenic CR45337 - chr2L 3260858 intergenic CR45337 - chr2L_5_3260001 chr2L_3260001 RAL-256 41 chr2L 3291250 3291265 chr2L 3291319 3291343 7 78 2.0 4.5 3.2 1.7 93 chr2L 3291250 3` UTR CG9664 - chr2L 3291296 3` UTR CG9664 - chr2L 3291343 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-256 42 chr2L 3482151 3482184 chr2L 3482241 3482274 5 90 0.0 0.5 0.2 4.2 123 chr2L 3482151 intron CG15414 - chr2L 3482212 intron CG15414 - chr2L 3482274 intron CG15414 - chr2L_5_3480001 chr2L_3480001 RAL-256 43 chr2L 3634102 3634121 chr2L 3634184 3634203 5 82 3.0 2.5 2.8 1.3 101 chr2L 3634102 intron for - chr2L 3634152 intron for - chr2L 3634203 intron for - chr2L_5_3630001 chr2L_3630001 RAL-256 44 chr2L 3646811 3646834 chr2L 3646893 3646916 6 82 0.0 1.0 0.5 4.0 105 chr2L 3646811 intron for - chr2L 3646864 intron for - chr2L 3646916 intron for - chr2L_6_3645001 chr2L_3645001 RAL-256 45 chr2L 3664152 3664168 chr2L 3664234 3664252 5 83 3.5 4.0 3.8 1.0 100 chr2L 3664152 intron CG34340 + chr2L 3664202 intron CG34340 + chr2L 3664252 intron CG34340 + chr2L_5_3660001 chr2L_3660001 RAL-256 46 chr2L 3785604 3785607 chr2L 3786376 3786381 4 773 4.0 10.5 7.2 0.5 777 chr2L 3785604 3` UTR CG31960 + chr2L 3785992 exon CG31958 + chr2L 3786381 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-256 47 chr2L 3891902 3891920 chr2L 3891987 3892004 5 85 1.0 2.5 1.8 1.8 102 chr2L 3891902 intron capu - chr2L 3891953 intron capu - chr2L 3892004 intron capu - chr2L_5_3890001 chr2L_3890001 RAL-256 48 chr2L 3906910 3906938 chr2L 3907074 3907092 4 157 16.0 21.0 18.5 0.2 182 chr2L 3906910 intron fred - chr2L 3907001 intron fred - chr2L 3907092 intron fred - chr2L_4_3905001 chr2L_3905001 RAL-256 49 chr2L 4066041 4066053 chr2L 4068866 4068878 Juan 5 2825 3.0 2.5 2.8 1.3 2837 chr2L 4066041 intron ed + chr2L 4067460 intron ed + chr2L 4068878 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-256 50 chr2L 4166375 4166411 chr2L 4166458 4166494 5 83 0.5 2.0 1.2 2.3 119 chr2L 4166375 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-256 51 chr2L 4285711 4285739 chr2L 4285790 4285819 14 79 3.0 4.0 3.5 3.1 108 chr2L 4285711 intron tutl + chr2L 4285765 intron tutl + chr2L 4285819 intron tutl + chr2L_14_4285001 chr2L_4285001 RAL-256 52 chr2L 4351482 4351497 chr2L 4351558 4351573 8 75 3.5 3.0 3.2 1.9 91 chr2L 4351482 intergenic CR44700 + chr2L 4351528 intergenic CR44700 + chr2L 4351573 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-256 53 chr2L 4470866 4470873 chr2L 4470943 4470950 4 77 3.5 1.0 2.2 1.2 84 chr2L 4470866 intron ine - chr2L 4470908 intron ine - chr2L 4470950 intron ine - chr2L_4_4470001 chr2L_4470001 RAL-256 54 chr2L 4601704 4601735 chr2L 4609145 4609176 mdg1 10 7440 5.5 2.0 3.8 2.1 7472 chr2L 4601704 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-256 55 chr2L 4656542 4656562 chr2L 4656619 4656639 5 77 1.0 0.0 0.5 3.3 97 chr2L 4656542 intergenic not near genes chr2L 4656590 intergenic not near genes chr2L 4656639 intergenic not near genes chr2L_5_4655001 chr2L_4655001 RAL-256 56 chr2L 4693406 4693418 chr2L 4693573 4693585 5 167 1.0 1.0 1.0 2.5 179 chr2L 4693406 intergenic not near genes chr2L 4693496 intergenic not near genes chr2L 4693585 intergenic not near genes chr2L_5_4690001 chr2L_4690001 RAL-256 57 chr2L 4708338 4708352 chr2L 4708467 4708482 4 130 3.5 3.0 3.2 1.0 144 chr2L 4708338 intron CG34351 + chr2L 4708410 intron CG34351 + chr2L 4708482 intron CG34351 + chr2L_4_4705001 chr2L_4705001 RAL-256 58 chr2L 4841072 4841100 chr2L 4841148 4841174 7 72 5.5 3.5 4.5 1.3 102 chr2L 4841072 intron CG12194 + chr2L 4841123 intron CG12194 + chr2L 4841174 exon CG12194 + chr2L_7_4840001 chr2L_4840001 RAL-256 59 chr2L 4953518 4953534 chr2L 4953759 4953775 pogo 4 241 3.0 0.0 1.5 1.6 257 chr2L 4953518 intergenic Jon25Bii - chr2L 4953646 intergenic not near genes chr2L 4953775 intergenic not near genes chr2L_4_4950001 chr2L_4950001 RAL-256 60 chr2L 5120988 5121003 chr2L 5121070 5121089 4 87 1.5 2.0 1.8 1.4 101 chr2L 5120988 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121089 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-256 61 chr2L 5200539 5200559 chr2L 5215806 5215814 4 15258 38.5 27.5 33.0 0.1 15275 chr2L 5200539 exon Msp300 + chr2L 5208176 exon Cyp28d2 + chr2L 5215814 exon CG14034 - chr2L_4_5205001 chr2L_5205001 RAL-256 62 chr2L 5298774 5298790 chr2L 5298856 5298872 4 79 3.0 1.0 2.0 1.3 98 chr2L 5298774 intron vri + chr2L 5298823 intron vri + chr2L 5298872 intron vri + chr2L_4_5295001 chr2L_5295001 RAL-256 63 chr2L 5508528 5508559 chr2L 5508604 5508635 5 76 1.5 0.5 1.0 2.5 107 chr2L 5508528 intergenic not near genes chr2L 5508582 intergenic not near genes chr2L 5508635 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-256 64 chr2L 5816179 5816194 chr2L 5816255 5816270 5 75 4.5 2.5 3.5 1.1 91 chr2L 5816179 intergenic not near genes chr2L 5816224 intergenic not near genes chr2L 5816270 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-256 65 chr2L 5827712 5827738 chr2L 5836718 5836746 roo 5 9007 2.0 2.0 2.0 1.7 9034 chr2L 5827712 intron TrissinR + chr2L 5832229 intron TrissinR + chr2L 5836746 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-256 66 chr2L 5942027 5942049 chr2L 5942119 5942140 4 92 1.5 4.0 2.8 1.1 113 chr2L 5942027 5` UTR CR45289 + chr2L 5942084 5` UTR CR45289 + chr2L 5942140 5` UTR CR45289 + chr2L_4_5940001 chr2L_5940001 RAL-256 67 chr2L 5993333 5993362 chr2L 5993424 5993453 15 90 1.0 5.5 3.2 3.6 120 chr2L 5993333 exon lid - chr2L 5993393 intron lid - chr2L 5993453 intron lid - chr2L_15_5990001 chr2L_5990001 RAL-256 68 chr2L 6001744 6001775 chr2L 6001821 6001851 6 76 2.5 2.0 2.2 1.9 107 chr2L 6001744 3` UTR Tsp26A + chr2L 6001798 3` UTR Tsp26A + chr2L 6001851 3` UTR Tsp26A + chr2L_6_6000001 chr2L_6000001 RAL-256 69 chr2L 6300576 6300593 chr2L 6300662 6300679 4 86 2.0 5.0 3.5 0.9 103 chr2L 6300576 intron Ddr + chr2L 6300628 intron Ddr + chr2L 6300679 intron Ddr + chr2L_4_6300001 chr2L_6300001 RAL-256 70 chr2L 6318737 6318759 chr2L 6318889 6318913 7 154 2.0 0.5 1.2 3.2 176 chr2L 6318737 intron Ddr + chr2L 6318825 intron Ddr + chr2L 6318913 intron Ddr + chr2L_7_6315001 chr2L_6315001 RAL-256 71 chr2L 6426855 6426884 chr2L 6445115 6445143 roo 11 18259 2.5 4.5 3.5 2.4 18288 chr2L 6426855 3` UTR CG9527 - chr2L 6435999 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-256 72 chr2L 6463564 6463578 chr2L 6463655 6463667 4 91 10.0 5.5 7.8 0.5 103 chr2L 6463564 exon CG16947 - chr2L 6463616 exon CG16947 - chr2L 6463667 exon CG16947 - chr2L_4_6460001 chr2L_6460001 RAL-256 73 chr2L 6544384 6544391 chr2L 6544470 6544482 4 90 2.0 3.0 2.5 1.1 98 chr2L 6544384 intron eya - chr2L 6544433 intron eya - chr2L 6544482 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-256 74 chr2L 6671177 6671203 chr2L 6671263 6671289 6 84 1.0 4.0 2.5 1.7 112 chr2L 6671177 intron,intron,3` UTR CG34310 +,cup +,Spn27A - chr2L 6671233 intron,intron,3` UTR CG34310 +,cup +,Spn27A - chr2L 6671289 intron,intron,3` UTR CG34310 +,cup +,Spn27A - chr2L_6_6670001 chr2L_6670001 RAL-256 75 chr2L 6701393 6701408 chr2L 6701452 6701486 7 74 3.5 0.5 2.0 2.3 93 chr2L 6701393 intron Tsp - chr2L 6701440 intron Tsp - chr2L 6701486 intron Tsp - chr2L_7_6700001 chr2L_6700001 RAL-256 76 chr2L 6804272 6804300 chr2L 6804349 6804378 5 78 2.5 0.5 1.5 2.0 106 chr2L 6804272 3` UTR CG11236 + chr2L 6804325 3` UTR,3` UTR CG11236 +,CG17375 - chr2L 6804378 3` UTR CG17375 - chr2L_5_6800001 chr2L_6800001 RAL-256 77 chr2L 6850377 6850414 chr2L 6850460 6850497 8 82 2.0 1.0 1.5 3.2 120 chr2L 6850377 intergenic not near genes chr2L 6850437 intergenic not near genes chr2L 6850497 intergenic not near genes chr2L_8_6850001 chr2L_6850001 RAL-256 78 chr2L 6891445 6891469 chr2L 6891543 6891565 8 96 1.0 2.0 1.5 3.2 120 chr2L 6891445 intron Nlg2 + chr2L 6891505 intron Nlg2 + chr2L 6891565 intron Nlg2 + chr2L_8_6890001 chr2L_6890001 RAL-256 79 chr2L 6949257 6949282 chr2L 6949379 6949404 5 118 0.0 3.5 1.8 1.8 147 chr2L 6949257 intergenic Gas41 -,ihog - chr2L 6949330 3` UTR Gas41 - chr2L 6949404 exon Gas41 - chr2L_5_6945001 chr2L_6945001 RAL-256 80 chr2L 7000374 7000397 chr2L 7000452 7000475 5 77 0.5 1.5 1.0 2.5 101 chr2L 7000374 intron uif - chr2L 7000424 intron uif - chr2L 7000475 intron uif - chr2L_5_7000001 chr2L_7000001 RAL-256 81 chr2L 7007412 7007425 chr2L 7007515 7007528 5 103 2.5 3.0 2.8 1.3 116 chr2L 7007412 intron uif - chr2L 7007470 intron uif - chr2L 7007528 intron uif - chr2L_5_7005001 chr2L_7005001 RAL-256 82 chr2L 7100981 7101010 chr2L 7101206 7101236 6 226 3.0 1.5 2.2 1.9 255 chr2L 7100981 intron Pvf3 - chr2L 7101108 intron Pvf3 - chr2L 7101236 intron Pvf3 - chr2L_6_7100001 chr2L_7100001 RAL-256 83 chr2L 7106677 7106703 chr2L 7106827 7106852 7 148 2.0 3.0 2.5 2.0 175 chr2L 7106677 intron Pvf3 - chr2L 7106764 intron Pvf3 - chr2L 7106852 intron Pvf3 - chr2L_7_7105001 chr2L_7105001 RAL-256 84 chr2L 7111771 7111790 chr2L 7111852 7111874 7 84 0.5 0.0 0.2 5.8 103 chr2L 7111771 intron Pvf3 - chr2L 7111822 intron Pvf3 - chr2L 7111874 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-256 85 chr2L 7249630 7249652 chr2L 7249705 7249735 9 80 0.5 2.0 1.2 4.1 105 chr2L 7249630 intergenic Ndae1 - chr2L 7249682 intergenic Ndae1 - chr2L 7249735 intergenic Ndae1 - chr2L_9_7245001 chr2L_7245001 RAL-256 86 chr2L 7325918 7325946 chr2L 7326002 7326020 4 81 1.5 2.0 1.8 1.4 102 chr2L 7325918 intergenic not near genes chr2L 7325969 intergenic not near genes chr2L 7326020 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-256 87 chr2L 7326489 7326494 chr2L 7326607 7326612 5 118 4.5 3.0 3.8 1.0 123 chr2L 7326489 intergenic not near genes chr2L 7326550 intergenic not near genes chr2L 7326612 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-256 88 chr2L 7337005 7337027 chr2L 7337080 7337104 14 77 1.5 2.5 2.0 4.7 99 chr2L 7337005 intron Wnt6 + chr2L 7337054 intron Wnt6 + chr2L 7337104 intron Wnt6 + chr2L_14_7335001 chr2L_7335001 RAL-256 89 chr2L 7493670 7493700 chr2L 7493880 7493911 6 211 3.5 2.0 2.8 1.6 241 chr2L 7493670 intron Ziz - chr2L 7493790 intron Ziz - chr2L 7493911 intron Ziz - chr2L_6_7490001 chr2L_7490001 RAL-256 90 chr2L 7516164 7516190 chr2L 7516249 7516277 5 86 2.5 2.5 2.5 1.4 113 chr2L 7516164 intron RapGAP1 - chr2L 7516220 intron RapGAP1 - chr2L 7516277 intron RapGAP1 - chr2L_5_7515001 chr2L_7515001 RAL-256 91 chr2L 7567500 7567512 chr2L 7567575 7567589 5 76 1.5 1.0 1.2 2.3 89 chr2L 7567500 intron RapGAP1 - chr2L 7567544 intron RapGAP1 - chr2L 7567589 intron RapGAP1 - chr2L_5_7565001 chr2L_7565001 RAL-256 92 chr2L 7959044 7959054 chr2L 7960455 7960465 pogo 6 1411 2.5 0.5 1.5 2.4 1421 chr2L 7959044 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960465 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-256 93 chr2L 7977091 7977110 chr2L 7984067 7984086 297 5 6976 3.0 3.0 3.0 1.2 6995 chr2L 7977091 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984086 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-256 94 chr2L 8044102 8044130 chr2L 8044181 8044209 7 79 3.0 1.5 2.2 2.2 107 chr2L 8044102 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044209 intron CG7466 + chr2L_7_8040001 chr2L_8040001 RAL-256 95 chr2L 8167148 8167179 chr2L 8167239 8167269 6 90 0.5 2.0 1.2 2.7 121 chr2L 8167148 intron Piezo + chr2L 8167208 intron Piezo + chr2L 8167269 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-256 96 chr2L 8244734 8244746 chr2L 8244854 8244868 5 121 2.0 4.0 3.0 1.2 134 chr2L 8244734 intron CG8086 - chr2L 8244801 intron CG8086 - chr2L 8244868 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-256 97 chr2L 8286294 8286329 chr2L 8286381 8286415 6 87 3.5 2.5 3.0 1.5 121 chr2L 8286294 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286415 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-256 98 chr2L 8345102 8345130 chr2L 8345180 8345212 6 79 2.0 2.5 2.2 1.9 110 chr2L 8345102 intergenic CR45371 - chr2L 8345157 intergenic CR45371 - chr2L 8345212 intergenic CR45371 - chr2L_6_8345001 chr2L_8345001 RAL-256 99 chr2L 8604966 8604985 chr2L 8605064 8605083 5 98 1.5 1.0 1.2 2.3 117 chr2L 8604966 intron Sema-1a + chr2L 8605024 intron Sema-1a + chr2L 8605083 intron Sema-1a + chr2L_5_8605001 chr2L_8605001 RAL-256 100 chr2L 8695816 8695850 chr2L 8695969 8696003 4 153 1.5 1.5 1.5 1.6 187 chr2L 8695816 intron Hnf4 - chr2L 8695910 intron Hnf4 - chr2L 8696003 intron Hnf4 - chr2L_4_8695001 chr2L_8695001 RAL-256 101 chr2L 8723119 8723144 chr2L 8731496 8731520 Tirant 7 8376 2.5 3.0 2.8 1.8 8401 chr2L 8723119 intron raw - chr2L 8727320 intron raw - chr2L 8731520 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-256 102 chr2L 9000281 9000310 chr2L 9007791 9007820 roo 6 7506 2.5 1.5 2.0 2.0 7539 chr2L 9000281 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007820 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-256 103 chr2L 9025821 9025853 chr2L 9025902 9025925 11 80 3.5 3.0 3.2 2.6 104 chr2L 9025821 intron,3` UTR CG9582 -,CR44352 - chr2L 9025873 intron,3` UTR CG9582 -,CR44352 - chr2L 9025925 intron,3` UTR CG9582 -,CR44352 - chr2L_11_9025001 chr2L_9025001 RAL-256 104 chr2L 9040043 9040057 chr2L 9040130 9040144 5 87 1.5 0.0 0.8 2.8 101 chr2L 9040043 intergenic not near genes chr2L 9040094 intergenic not near genes chr2L 9040144 intergenic not near genes chr2L_5_9040001 chr2L_9040001 RAL-256 105 chr2L 9084336 9084340 chr2L 16217660 16217660 10 7133322 14.0 21.5 17.8 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-256 106 chr2L 9202054 9202087 chr2L 9202130 9202162 8 73 2.5 2.0 2.2 2.5 108 chr2L 9202054 intron tai + chr2L 9202108 intron tai + chr2L 9202162 intron tai + chr2L_8_9200001 chr2L_9200001 RAL-256 107 chr2L 9217971 9218002 chr2L 9222758 9222789 Doc 9 4783 2.5 4.5 3.5 2.0 4818 chr2L 9217971 intron tai + chr2L 9220380 intron tai + chr2L 9222789 intron tai + chr2L_9_9220001 chr2L_9220001 RAL-256 108 chr2L 9303520 9303546 chr2L 9303597 9303626 13 79 0.5 3.0 1.8 4.6 106 chr2L 9303520 intergenic not near genes chr2L 9303573 intergenic not near genes chr2L 9303626 intergenic not near genes chr2L_13_9300001 chr2L_9300001 RAL-256 109 chr2L 9317426 9317560 chr2L 9317544 9317837 5 245 0.0 0.0 0.0 5.0 411 chr2L 9317426 intergenic not near genes chr2L 9317632 intergenic not near genes chr2L 9317837 intergenic not near genes chr2L_5_9315001 chr2L_9315001 RAL-256 110 chr2L 9393496 9393528 chr2L 9396463 9396495 jockey 10 2967 0.5 1.5 1.0 5.0 2999 chr2L 9393496 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396495 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-256 111 chr2L 9687103 9687130 chr2L 9687258 9687285 6 155 1.5 0.5 1.0 3.0 182 chr2L 9687103 intron Pka-C1 - chr2L 9687194 intron Pka-C1 - chr2L 9687285 intron Pka-C1 - chr2L_6_9685001 chr2L_9685001 RAL-256 112 chr2L 9734799 9734815 chr2L 9735123 9735139 4 324 0.0 2.0 1.0 2.0 340 chr2L 9734799 intron Nckx30C - chr2L 9734969 intron Nckx30C - chr2L 9735139 intron Nckx30C - chr2L_4_9730001 chr2L_9730001 RAL-256 113 chr2L 9752483 9752515 chr2L 9752576 9752608 6 93 4.5 1.0 2.8 1.6 125 chr2L 9752483 intergenic not near genes chr2L 9752546 intergenic not near genes chr2L 9752608 intergenic not near genes chr2L_6_9750001 chr2L_9750001 RAL-256 114 chr2L 9882245 9882269 chr2L 9882450 9882475 13 205 2.0 2.0 2.0 4.3 230 chr2L 9882245 intron nAChRalpha6 - chr2L 9882360 intron nAChRalpha6 - chr2L 9882475 intron nAChRalpha6 - chr2L_13_9880001 chr2L_9880001 RAL-256 115 chr2L 9973724 9973759 chr2L 9980843 9980878 HMS-Beagle 17 7117 4.0 5.5 4.8 2.9 7154 chr2L 9973724 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_17_9975001 chr2L_9975001 RAL-256 116 chr2L 9986359 9986374 chr2L 9986453 9986458 4 92 2.5 4.5 3.5 0.9 99 chr2L 9986359 intron bib + chr2L 9986408 intron bib + chr2L 9986458 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-256 117 chr2L 9986380 9986384 chr2L 9986444 9986479 5 84 1.5 2.0 1.8 1.8 99 chr2L 9986380 intron bib + chr2L 9986430 intron bib + chr2L 9986479 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-256 118 chr2L 10019560 10019569 chr2L 10019642 10019652 5 83 1.5 3.0 2.2 1.6 92 chr2L 10019560 intergenic not near genes chr2L 10019606 intergenic not near genes chr2L 10019652 intergenic not near genes chr2L_5_10015001 chr2L_10015001 RAL-256 119 chr2L 10051725 10051750 chr2L 10051810 10051828 12 82 7.5 6.0 6.8 1.5 103 chr2L 10051725 5` UTR CR44874 + chr2L 10051776 5` UTR CR44874 + chr2L 10051828 5` UTR CR44874 + chr2L_12_10050001 chr2L_10050001 RAL-256 120 chr2L 10078122 10078154 chr2L 10078280 10078311 8 157 4.0 1.5 2.8 2.1 189 chr2L 10078122 intron CG44153 - chr2L 10078216 intron CG44153 - chr2L 10078311 intron CG44153 - chr2L_8_10075001 chr2L_10075001 RAL-256 121 chr2L 10095638 10095661 chr2L 10095718 10095741 5 78 0.0 1.5 0.8 2.8 103 chr2L 10095638 intron CG44153 - chr2L 10095690 intron CG44153 - chr2L 10095741 intron CG44153 - chr2L_5_10095001 chr2L_10095001 RAL-256 122 chr2L 10105283 10105314 chr2L 10105358 10105390 7 72 1.0 1.5 1.2 3.2 107 chr2L 10105283 intron,intron CG44153 -,CG34109 + chr2L 10105336 intron,intron CG44153 -,CG34109 + chr2L 10105390 intron,intron CG44153 -,CG34109 + chr2L_7_10105001 chr2L_10105001 RAL-256 123 chr2L 10156321 10156343 chr2L 10163791 10163812 blood 8 7468 1.0 2.5 1.8 2.9 7491 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160066 intron CG44153 - chr2L 10163812 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-256 124 chr2L 10175898 10175927 chr2L 10175993 10176024 7 94 2.0 3.5 2.8 1.8 126 chr2L 10175898 intron CG44153 - chr2L 10175961 intron CG44153 - chr2L 10176024 intron CG44153 - chr2L_7_10175001 chr2L_10175001 RAL-256 125 chr2L 10490277 10490308 chr2L 10490359 10490390 4 81 2.0 2.5 2.2 1.2 113 chr2L 10490277 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490334 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490390 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_4_10490001 chr2L_10490001 RAL-256 126 chr2L 10572702 10572734 chr2L 10572783 10572815 8 81 2.0 3.5 2.8 2.1 113 chr2L 10572702 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572815 intron Trim9 + chr2L_8_10570001 chr2L_10570001 RAL-256 127 chr2L 10580793 10580822 chr2L 10580874 10580901 4 80 1.5 3.5 2.5 1.1 108 chr2L 10580793 intron Trim9 + chr2L 10580847 intron Trim9 + chr2L 10580901 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-256 128 chr2L 10640638 10640672 chr2L 10640727 10640761 18 88 5.5 3.0 4.2 3.5 123 chr2L 10640638 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640761 exon CG31872 + chr2L_18_10640001 chr2L_10640001 RAL-256 129 chr2L 10647600 10647606 chr2L 10647724 10647724 4 123 9.5 18.0 13.8 0.3 124 chr2L 10647600 exon CG17097 + chr2L 10647662 exon CG17097 + chr2L 10647724 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-256 130 chr2L 10740335 10740356 chr2L 10740430 10740450 5 95 2.0 2.0 2.0 1.7 115 chr2L 10740335 3` UTR CG12299 + chr2L 10740392 3` UTR CG12299 + chr2L 10740450 3` UTR CG12299 + chr2L_5_10740001 chr2L_10740001 RAL-256 131 chr2L 10795429 10795458 chr2L 10795559 10795588 4 130 1.0 1.5 1.2 1.8 159 chr2L 10795429 intron CG31869 - chr2L 10795508 intron CG31869 - chr2L 10795588 intron CG31869 - chr2L_4_10795001 chr2L_10795001 RAL-256 132 chr2L 10809528 10809540 chr2L 10809611 10809624 7 83 4.0 1.0 2.5 2.0 96 chr2L 10809528 intron Nos - chr2L 10809576 intron Nos - chr2L 10809624 intron Nos - chr2L_7_10805001 chr2L_10805001 RAL-256 133 chr2L 10849635 10849666 chr2L 10849909 10849940 9 271 3.0 2.0 2.5 2.6 305 chr2L 10849635 5` UTR porin - chr2L 10849788 5` UTR porin - chr2L 10849940 5` UTR porin - chr2L_9_10845001 chr2L_10845001 RAL-256 134 chr2L 10862847 10862875 chr2L 10864457 10864484 Rt1c 7 1610 6.5 5.0 5.8 1.0 1637 chr2L 10862847 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864484 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-256 135 chr2L 10873048 10873080 chr2L 10873128 10873160 12 78 2.0 3.0 2.5 3.4 112 chr2L 10873048 intergenic not near genes chr2L 10873104 intergenic not near genes chr2L 10873160 intergenic not near genes chr2L_12_10870001 chr2L_10870001 RAL-256 136 chr2L 10912987 10913001 chr2L 10913065 10913080 9 78 7.0 2.5 4.8 1.6 93 chr2L 10912987 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913080 intergenic not near genes chr2L_9_10910001 chr2L_10910001 RAL-256 137 chr2L 10914809 10914816 chr2L 10914894 10914906 4 89 4.5 2.5 3.5 0.9 97 chr2L 10914809 intergenic not near genes chr2L 10914858 intergenic not near genes chr2L 10914906 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-256 138 chr2L 10914817 10914834 chr2L 10914891 10914919 5 86 2.5 2.0 2.2 1.6 102 chr2L 10914817 intergenic not near genes chr2L 10914868 intergenic not near genes chr2L 10914919 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-256 139 chr2L 10946950 10946974 chr2L 10956164 10956189 roo 8 9214 4.5 6.0 5.2 1.3 9239 chr2L 10946950 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956189 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-256 140 chr2L 11083146 11083167 chr2L 11083223 11083244 4 77 1.0 2.5 1.8 1.4 98 chr2L 11083146 intergenic AstCC - chr2L 11083195 intergenic AstCC - chr2L 11083244 intergenic AstCC - chr2L_4_11080001 chr2L_11080001 RAL-256 141 chr2L 11315268 11315272 chr2L 11317672 11317676 G2 4 2404 2.5 0.5 1.5 1.6 2408 chr2L 11315268 intergenic not near genes chr2L 11316472 intergenic not near genes chr2L 11317676 intergenic not near genes chr2L_4_11315001 chr2L_11315001 RAL-256 142 chr2L 11332053 11332072 chr2L 11332152 11332178 6 101 0.5 3.0 1.8 2.1 125 chr2L 11332053 3` UTR CR44584 - chr2L 11332116 3` UTR CR44584 - chr2L 11332178 3` UTR CR44584 - chr2L_6_11330001 chr2L_11330001 RAL-256 143 chr2L 11360425 11360447 chr2L 11360511 11360533 6 83 2.5 1.5 2.0 2.0 108 chr2L 11360425 intron salr + chr2L 11360479 intron salr + chr2L 11360533 intron salr + chr2L_6_11360001 chr2L_11360001 RAL-256 144 chr2L 11380613 11380633 chr2L 11380688 11380709 4 76 1.0 1.0 1.0 2.0 96 chr2L 11380613 intergenic not near genes chr2L 11380661 intergenic not near genes chr2L 11380709 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-256 145 chr2L 11418656 11418683 chr2L 11418735 11418762 8 78 3.0 2.0 2.5 2.3 106 chr2L 11418656 intergenic not near genes chr2L 11418709 intergenic not near genes chr2L 11418762 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-256 146 chr2L 11538821 11538850 chr2L 11538906 11538935 14 84 6.0 1.0 3.5 3.1 114 chr2L 11538821 intergenic not near genes chr2L 11538878 intergenic not near genes chr2L 11538935 intergenic not near genes chr2L_14_11535001 chr2L_11535001 RAL-256 147 chr2L 11563639 11563668 chr2L 11568843 11568872 copia 5 5204 2.5 1.0 1.8 1.8 5233 chr2L 11563639 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568872 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-256 148 chr2L 11614050 11614086 chr2L 11615545 11615558 hopper2 5 1480 1.0 1.5 1.2 2.3 1508 chr2L 11614050 intron kek2 + chr2L 11614804 intron kek2 + chr2L 11615558 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-256 149 chr2L 11713508 11713539 chr2L 11720975 11721005 blood 6 7468 2.0 1.0 1.5 2.4 7497 chr2L 11713508 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-256 150 chr2L 11750328 11750341 chr2L 11750614 11750627 4 286 2.0 2.0 2.0 1.3 299 chr2L 11750328 intergenic not near genes chr2L 11750478 intergenic not near genes chr2L 11750627 intergenic not near genes chr2L_4_11750001 chr2L_11750001 RAL-256 151 chr2L 11854673 11854683 chr2L 11854839 11854849 7 166 7.5 1.5 4.5 1.3 176 chr2L 11854673 intron Pde1c - chr2L 11854761 intron Pde1c - chr2L 11854849 intron Pde1c - chr2L_7_11850001 chr2L_11850001 RAL-256 152 chr2L 12157607 12157629 chr2L 12157686 12157708 8 78 3.0 1.5 2.2 2.5 101 chr2L 12157607 intron CG31760 + chr2L 12157658 intron CG31760 + chr2L 12157708 intron CG31760 + chr2L_8_12155001 chr2L_12155001 RAL-256 153 chr2L 12284039 12284066 chr2L 12284129 12284154 7 88 1.5 2.0 1.8 2.5 115 chr2L 12284039 intron aret + chr2L 12284096 intron aret + chr2L 12284154 intron aret + chr2L_7_12280001 chr2L_12280001 RAL-256 154 chr2L 12284708 12284725 chr2L 12284802 12284819 4 94 1.5 1.5 1.5 1.6 111 chr2L 12284708 intron aret + chr2L 12284764 intron aret + chr2L 12284819 intron aret + chr2L_4_12280001 chr2L_12280001 RAL-256 155 chr2L 12289801 12289827 chr2L 12290060 12290060 4 248 5.5 3.5 4.5 0.7 259 chr2L 12289801 intron aret + chr2L 12289930 intron aret + chr2L 12290060 intron aret + chr2L_4_12285001 chr2L_12285001 RAL-256 156 chr2L 12487884 12487912 chr2L 12487965 12487990 7 80 6.0 1.5 3.8 1.5 106 chr2L 12487884 intron bun - chr2L 12487937 intron bun - chr2L 12487990 intron bun - chr2L_7_12485001 chr2L_12485001 RAL-256 157 chr2L 12501947 12501976 chr2L 12502312 12502341 8 362 0.5 0.5 0.5 5.3 394 chr2L 12501947 intron bun - chr2L 12502144 intron bun - chr2L 12502341 intron bun - chr2L_8_12500001 chr2L_12500001 RAL-256 158 chr2L 12529251 12529442 chr2L 12529384 12529518 4 90 0.0 0.0 0.0 4.0 267 chr2L 12529251 intron bun - chr2L 12529384 intron bun - chr2L 12529518 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-256 159 chr2L 12558328 12558344 chr2L 12565457 12565473 HMS-Beagle 5 7129 0.0 1.0 0.5 3.3 7145 chr2L 12558328 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565473 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-256 160 chr2L 12731063 12731093 chr2L 12735830 12735860 F-element 7 4767 1.5 1.5 1.5 2.8 4797 chr2L 12731063 intron MRP + chr2L 12733462 intron MRP + chr2L 12735860 intron MRP + chr2L_7_12730001 chr2L_12730001 RAL-256 161 chr2L 12737460 12737492 chr2L 12737696 12737728 17 234 2.0 0.5 1.2 7.7 268 chr2L 12737460 intron MRP + chr2L 12737594 intron MRP + chr2L 12737728 intron MRP + chr2L_17_12735001 chr2L_12735001 RAL-256 162 chr2L 12739172 12739205 chr2L 12743953 12743984 Doc 7 4778 2.5 2.5 2.5 2.0 4812 chr2L 12739172 exon MRP + chr2L 12741578 intron MRP + chr2L 12743984 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-256 163 chr2L 12751310 12751337 chr2L 12751393 12751420 5 83 3.5 2.5 3.0 1.2 110 chr2L 12751310 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-256 164 chr2L 12861694 12861729 chr2L 12863161 12863196 hobo 11 1467 1.5 3.0 2.2 3.4 1502 chr2L 12861694 intergenic not near genes chr2L 12862445 intergenic not near genes chr2L 12863196 intergenic not near genes chr2L_11_12860001 chr2L_12860001 RAL-256 165 chr2L 12933850 12933871 chr2L 12941317 12941338 blood 5 7466 7.5 3.5 5.5 0.8 7488 chr2L 12933850 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941338 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-256 166 chr2L 13241958 13241969 chr2L 13244342 13244352 BS 5 2383 8.0 4.0 6.0 0.7 2394 chr2L 13241958 5` UTR CR45330 + chr2L 13243155 intron CR45330 + chr2L 13244352 5` UTR CR45330 + chr2L_5_13240001 chr2L_13240001 RAL-256 167 chr2L 13266382 13266406 chr2L 13266470 13266494 6 88 2.5 1.5 2.0 2.0 112 chr2L 13266382 intron CG44085 + chr2L 13266438 intron CG44085 + chr2L 13266494 intron CG44085 + chr2L_6_13265001 chr2L_13265001 RAL-256 168 chr2L 13400709 13400738 chr2L 13401069 13401098 5 358 2.0 1.5 1.8 1.8 389 chr2L 13400709 intron CG7110 + chr2L 13400904 intron CG7110 + chr2L 13401098 intron CG7110 + chr2L_5_13400001 chr2L_13400001 RAL-256 169 chr2L 13405646 13405683 chr2L 13410443 13410480 Doc 9 4797 3.5 1.0 2.2 2.8 4834 chr2L 13405646 exon CG7110 + chr2L 13408063 intron CG7110 + chr2L 13410480 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-256 170 chr2L 13449467 13449492 chr2L 13456903 13456928 Quasimodo 4 7436 1.5 2.5 2.0 1.3 7461 chr2L 13449467 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456928 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-256 171 chr2L 13481453 13481472 chr2L 13482060 13482079 jockey 4 606 1.5 2.5 2.0 1.3 626 chr2L 13481453 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-256 172 chr2L 13693013 13693034 chr2L 13693089 13693110 4 74 1.0 2.5 1.8 1.4 97 chr2L 13693013 intron CG31814 - chr2L 13693062 intron CG31814 - chr2L 13693110 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-256 173 chr2L 13725748 13725774 chr2L 13725835 13725860 10 86 0.0 4.0 2.0 3.3 112 chr2L 13725748 intergenic not near genes chr2L 13725804 intergenic not near genes chr2L 13725860 intergenic not near genes chr2L_10_13725001 chr2L_13725001 RAL-256 174 chr2L 13761814 13761833 chr2L 13762911 13762942 Doc 6 1103 1.0 0.0 0.5 4.0 1128 chr2L 13761814 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762942 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-256 175 chr2L 13853088 13853115 chr2L 13862238 13862265 roo 6 9149 2.0 4.0 3.0 1.5 9177 chr2L 13853088 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862265 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-256 176 chr2L 14199223 14199247 chr2L 14199338 14199361 9 112 2.0 2.5 2.2 2.8 138 chr2L 14199223 intron Dyrk2 - chr2L 14199292 intron Dyrk2 - chr2L 14199361 intron Dyrk2 - chr2L_9_14195001 chr2L_14195001 RAL-256 177 chr2L 14246287 14246311 chr2L 14246365 14246387 6 77 0.0 0.5 0.2 5.0 100 chr2L 14246287 intergenic not near genes chr2L 14246337 intergenic not near genes chr2L 14246387 intergenic not near genes chr2L_6_14245001 chr2L_14245001 RAL-256 178 chr2L 14378654 14378680 chr2L 14378733 14378759 5 79 0.5 0.0 0.2 4.2 105 chr2L 14378654 3` UTR ppk - chr2L 14378706 3` UTR ppk - chr2L 14378759 3` UTR ppk - chr2L_5_14375001 chr2L_14375001 RAL-256 179 chr2L 14396030 14396060 chr2L 14399139 14399169 8 3110 9.0 7.0 8.0 0.9 3139 chr2L 14396030 intron elB - chr2L 14397600 intron elB - chr2L 14399169 intron elB - chr2L_8_14395001 chr2L_14395001 RAL-256 180 chr2L 14482122 14482139 chr2L 14482220 14482244 4 101 3.0 1.0 2.0 1.3 122 chr2L 14482122 intergenic not near genes chr2L 14482183 intergenic not near genes chr2L 14482244 intergenic not near genes chr2L_4_14480001 chr2L_14480001 RAL-256 181 chr2L 14484233 14484239 chr2L 14484291 14484316 4 70 3.5 6.0 4.8 0.7 83 chr2L 14484233 intergenic not near genes chr2L 14484274 intergenic not near genes chr2L 14484316 intergenic not near genes chr2L_4_14480001 chr2L_14480001 RAL-256 182 chr2L 14537659 14537686 chr2L 14537751 14537778 6 92 0.5 1.5 1.0 3.0 119 chr2L 14537659 intergenic not near genes chr2L 14537718 intergenic not near genes chr2L 14537778 intergenic not near genes chr2L_6_14535001 chr2L_14535001 RAL-256 183 chr2L 14565933 14565948 chr2L 14566298 14566313 7 365 3.0 1.5 2.2 2.2 380 chr2L 14565933 intergenic not near genes chr2L 14566123 intergenic not near genes chr2L 14566313 intergenic not near genes chr2L_7_14565001 chr2L_14565001 RAL-256 184 chr2L 14588382 14588420 chr2L 14588535 14588560 4 150 1.5 0.0 0.8 2.2 178 chr2L 14588382 intergenic CG42680 - chr2L 14588471 intergenic CG42680 - chr2L 14588560 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-256 185 chr2L 14601975 14602001 chr2L 14602059 14602085 7 83 3.5 2.0 2.8 1.8 110 chr2L 14601975 exon osp - chr2L 14602030 intron osp - chr2L 14602085 intron osp - chr2L_7_14600001 chr2L_14600001 RAL-256 186 chr2L 14803877 14803910 chr2L 14809080 14809113 copia 11 5202 1.0 2.5 1.8 3.9 5236 chr2L 14803877 intergenic not near genes chr2L 14806495 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_11_14805001 chr2L_14805001 RAL-256 187 chr2L 14889951 14889988 chr2L 14890376 14890413 jockey 16 425 3.0 2.0 2.5 4.6 462 chr2L 14889951 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_16_14890001 chr2L_14890001 RAL-256 188 chr2L 15003546 15003572 chr2L 15003630 15003656 9 83 0.5 1.5 1.0 4.5 110 chr2L 15003546 intergenic not near genes chr2L 15003601 intergenic not near genes chr2L 15003656 intergenic not near genes chr2L_9_15000001 chr2L_15000001 RAL-256 189 chr2L 15076290 15076312 chr2L 15076371 15076393 8 82 1.5 3.5 2.5 2.3 103 chr2L 15076290 intron CG15270 + chr2L 15076342 intron CG15270 + chr2L 15076393 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-256 190 chr2L 15175257 15175286 chr2L 15175367 15175396 5 110 0.5 2.5 1.5 2.0 139 chr2L 15175257 intron CG4168 - chr2L 15175326 intron CG4168 - chr2L 15175396 intron CG4168 - chr2L_5_15175001 chr2L_15175001 RAL-256 191 chr2L 15354940 15354956 chr2L 15355018 15355043 6 87 0.5 0.5 0.5 4.0 103 chr2L 15354940 intergenic not near genes chr2L 15354992 intergenic not near genes chr2L 15355043 intergenic not near genes chr2L_6_15350001 chr2L_15350001 RAL-256 192 chr2L 15446054 15446083 chr2L 15453523 15453552 blood 5 7469 1.0 0.5 0.8 2.8 7498 chr2L 15446054 intergenic not near genes chr2L 15449803 intergenic not near genes chr2L 15453552 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-256 193 chr2L 15510939 15510967 chr2L 15511033 15511061 6 94 2.0 1.5 1.8 2.1 122 chr2L 15510939 intergenic not near genes chr2L 15511000 intergenic not near genes chr2L 15511061 intergenic not near genes chr2L_6_15510001 chr2L_15510001 RAL-256 194 chr2L 15535887 15535901 chr2L 15535977 15535990 4 90 3.5 2.0 2.8 1.1 103 chr2L 15535887 intergenic not near genes chr2L 15535938 intergenic not near genes chr2L 15535990 intergenic not near genes chr2L_4_15535001 chr2L_15535001 RAL-256 195 chr2L 16069265 16069297 chr2L 16069347 16069379 7 81 2.5 1.5 2.0 2.3 114 chr2L 16069265 intron beat-Ia + chr2L 16069322 intron beat-Ia + chr2L 16069379 intron beat-Ia + chr2L_7_16065001 chr2L_16065001 RAL-256 196 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 16 145889 21.5 21.5 21.5 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_16_16140001 chr2L_16140001 RAL-256 197 chr2L 16098934 16098953 chr2L 16099022 16099041 6 88 1.0 0.5 0.8 3.3 107 chr2L 16098934 intergenic not near genes chr2L 16098988 intergenic not near genes chr2L 16099041 intergenic not near genes chr2L_6_16095001 chr2L_16095001 RAL-256 198 chr2L 16123485 16123525 chr2L 16123567 16123603 4 79 0.0 1.0 0.5 2.7 118 chr2L 16123485 intergenic not near genes chr2L 16123544 intergenic not near genes chr2L 16123603 intergenic not near genes chr2L_4_16120001 chr2L_16120001 RAL-256 199 chr2L 16141173 16141192 chr2L 16146378 16146399 copia 7 5206 0.5 4.0 2.2 2.2 5226 chr2L 16141173 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146399 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-256 200 chr2L 9084337 9084340 chr2L 16217660 16217660 13 7133321 14.0 21.5 17.8 0.7 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-256 201 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 21.5 21.5 21.5 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-256 202 chr2L 16280259 16280286 chr2L 16281427 16281456 1360 9 1169 2.5 3.0 2.8 2.4 1197 chr2L 16280259 intron crp - chr2L 16280858 intron crp - chr2L 16281456 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-256 203 chr2L 16434106 16434127 chr2L 16434188 16434209 4 82 1.5 1.0 1.2 1.8 103 chr2L 16434106 intron CG5888 - chr2L 16434158 intron CG5888 - chr2L 16434209 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-256 204 chr2L 16958104 16958120 chr2L 16962892 16962908 Doc 5 4788 0.0 1.5 0.8 2.8 4804 chr2L 16958104 intergenic not near genes chr2L 16960506 intergenic not near genes chr2L 16962908 intergenic not near genes chr2L_5_16960001 chr2L_16960001 RAL-256 205 chr2L 17046287 17046312 chr2L 17046397 17046406 7 107 2.5 0.5 1.5 2.8 119 chr2L 17046287 intergenic not near genes chr2L 17046346 intergenic not near genes chr2L 17046406 intergenic not near genes chr2L_7_17045001 chr2L_17045001 RAL-256 206 chr2L 17185423 17185447 chr2L 17185521 17185541 5 98 0.5 2.0 1.2 2.3 118 chr2L 17185423 intergenic not near genes chr2L 17185482 intergenic not near genes chr2L 17185541 intergenic not near genes chr2L_5_17185001 chr2L_17185001 RAL-256 207 chr2L 17273188 17273217 chr2L 17277971 17278000 F-element 9 4779 3.5 2.0 2.8 2.4 4812 chr2L 17273188 intergenic not near genes chr2L 17275594 intergenic not near genes chr2L 17278000 intergenic not near genes chr2L_9_17275001 chr2L_17275001 RAL-256 208 chr2L 17327910 17327929 chr2L 17327996 17328015 8 85 3.5 3.0 3.2 1.9 105 chr2L 17327910 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-256 209 chr2L 17466969 17466987 chr2L 17467386 17467407 5 419 4.0 2.0 3.0 1.2 438 chr2L 17466969 intron BicD - chr2L 17467188 intron BicD - chr2L 17467407 intron BicD - chr2L_5_17465001 chr2L_17465001 RAL-256 210 chr2L 17565380 17565411 chr2L 17565471 17565502 5 91 0.0 0.0 0.0 5.0 122 chr2L 17565380 intergenic not near genes chr2L 17565441 intergenic not near genes chr2L 17565502 intergenic not near genes chr2L_5_17565001 chr2L_17565001 RAL-256 211 chr2L 17584094 17584115 chr2L 17584882 17584901 10 787 21.5 1.0 11.2 0.8 807 chr2L 17584094 5` UTR CR45111 + chr2L 17584498 intergenic CR45111 +,CR45112 - chr2L 17584901 3` UTR CR45112 - chr2L_10_17580001 chr2L_17580001 RAL-256 212 chr2L 17583878 17583901 chr2L 17584826 17584850 7 953 27.5 7.5 17.5 0.4 972 chr2L 17583878 intergenic CR45111 + chr2L 17584364 5` UTR CR45111 + chr2L 17584850 3` UTR CR45112 - chr2L_7_17580001 chr2L_17580001 RAL-256 213 chr2L 17748000 17748021 chr2L 17748077 17748097 7 75 5.0 4.0 4.5 1.3 97 chr2L 17748000 intron CadN - chr2L 17748048 intron CadN - chr2L 17748097 intron CadN - chr2L_7_17745001 chr2L_17745001 RAL-256 214 chr2L 17796034 17796045 chr2L 17796115 17796126 4 81 2.0 0.5 1.2 1.8 92 chr2L 17796034 intron CadN2 - chr2L 17796080 intron CadN2 - chr2L 17796126 intron CadN2 - chr2L_4_17795001 chr2L_17795001 RAL-256 215 chr2L 17819921 17819946 chr2L 17825124 17825149 copia 5 5202 3.0 2.5 2.8 1.3 5228 chr2L 17819921 intron CadN2 - chr2L 17822535 intron CadN2 - chr2L 17825149 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-256 216 chr2L 17880000 17880030 chr2L 17880087 17880116 11 86 0.0 2.5 1.2 5.0 116 chr2L 17880000 intergenic not near genes chr2L 17880058 intergenic not near genes chr2L 17880116 intergenic not near genes chr2L_11_17880001 chr2L_17880001 RAL-256 217 chr2L 17891461 17891486 chr2L 17891539 17891564 6 77 1.5 1.5 1.5 2.4 103 chr2L 17891461 intergenic not near genes chr2L 17891512 intergenic not near genes chr2L 17891564 intergenic not near genes chr2L_6_17890001 chr2L_17890001 RAL-256 218 chr2L 17944418 17944449 chr2L 17944581 17944612 9 162 3.5 1.5 2.5 2.6 194 chr2L 17944418 intergenic not near genes chr2L 17944515 intergenic not near genes chr2L 17944612 intergenic not near genes chr2L_9_17940001 chr2L_17940001 RAL-256 219 chr2L 18051875 18051903 chr2L 18061022 18061050 roo 6 9147 3.5 1.0 2.2 1.9 9175 chr2L 18051875 intron rdo + chr2L 18056462 intron rdo + chr2L 18061050 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-256 220 chr2L 18143491 18143500 chr2L 18143548 18143579 6 75 3.0 3.0 3.0 1.5 88 chr2L 18143491 intron Socs36E - chr2L 18143535 intron Socs36E - chr2L 18143579 intron Socs36E - chr2L_6_18140001 chr2L_18140001 RAL-256 221 chr2L 18255488 18255515 chr2L 18255566 18255600 15 83 3.5 5.0 4.2 2.9 112 chr2L 18255488 intron CG42750 - chr2L 18255544 intron CG42750 - chr2L 18255600 intron CG42750 - chr2L_15_18255001 chr2L_18255001 RAL-256 222 chr2L 18274042 18274071 chr2L 18274127 18274156 9 85 1.0 3.0 2.0 3.0 114 chr2L 18274042 intron CG42750 - chr2L 18274099 intron CG42750 - chr2L 18274156 intron CG42750 - chr2L_9_18270001 chr2L_18270001 RAL-256 223 chr2L 18286421 18286447 chr2L 18286513 18286540 5 93 0.5 1.0 0.8 2.8 119 chr2L 18286421 intergenic not near genes chr2L 18286480 intergenic not near genes chr2L 18286540 intergenic not near genes chr2L_5_18285001 chr2L_18285001 RAL-256 224 chr2L 18291530 18291540 chr2L 18291628 18291638 4 98 0.5 0.0 0.2 3.3 108 chr2L 18291530 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291584 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291638 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_4_18290001 chr2L_18290001 RAL-256 225 chr2L 18344915 18344942 chr2L 18345026 18345055 4 113 2.0 2.0 2.0 1.3 140 chr2L 18344915 intron Fas3 + chr2L 18344985 intron Fas3 + chr2L 18345055 intron Fas3 + chr2L_4_18340001 chr2L_18340001 RAL-256 226 chr2L 18408024 18408052 chr2L 18412808 18412835 Doc 5 4784 0.5 1.0 0.8 2.8 4811 chr2L 18408024 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412835 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-256 227 chr2L 18561560 18561579 chr2L 18561659 18561680 6 101 1.5 2.0 1.8 2.1 120 chr2L 18561560 intron Pde11 - chr2L 18561620 intron Pde11 - chr2L 18561680 intron Pde11 - chr2L_6_18560001 chr2L_18560001 RAL-256 228 chr2L 18762343 18762373 chr2L 18762435 18762465 11 88 2.5 2.0 2.2 3.4 122 chr2L 18762343 intergenic not near genes chr2L 18762404 intergenic ham - chr2L 18762465 intergenic ham - chr2L_11_18760001 chr2L_18760001 RAL-256 229 chr2L 18767639 18767674 chr2L 18767717 18767753 9 77 1.5 2.0 1.8 3.2 114 chr2L 18767639 intron ham - chr2L 18767696 intron ham - chr2L 18767753 intron ham - chr2L_9_18765001 chr2L_18765001 RAL-256 230 chr2L 18811405 18811422 chr2L 18811487 18811504 4 82 1.5 0.0 0.8 2.2 99 chr2L 18811405 intergenic CG10570 -,CG42502 - chr2L 18811454 intergenic CG10570 -,CG42502 - chr2L 18811504 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-256 231 chr2L 18812567 18812575 chr2L 18812830 18812838 5 263 2.5 2.0 2.2 1.6 271 chr2L 18812567 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812838 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-256 232 chr2L 18883859 18883885 chr2L 18883940 18883967 5 82 1.0 1.5 1.2 2.3 108 chr2L 18883859 intergenic not near genes chr2L 18883913 intergenic not near genes chr2L 18883967 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-256 233 chr2L 18891125 18891151 chr2L 18891229 18891252 5 94 1.5 1.0 1.2 2.3 127 chr2L 18891125 intergenic not near genes chr2L 18891188 intergenic not near genes chr2L 18891252 intergenic not near genes chr2L_5_18890001 chr2L_18890001 RAL-256 234 chr2L 18898410 18898426 chr2L 18898492 18898508 6 82 3.0 0.0 1.5 2.4 98 chr2L 18898410 intergenic not near genes chr2L 18898459 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_6_18895001 chr2L_18895001 RAL-256 235 chr2L 18990313 18990341 chr2L 18990424 18990452 8 109 2.5 1.5 2.0 2.7 139 chr2L 18990313 intergenic CG15170 - chr2L 18990382 intergenic CG15170 - chr2L 18990452 intergenic CG15170 - chr2L_8_18990001 chr2L_18990001 RAL-256 236 chr2L 19147375 19147401 chr2L 19154410 19154436 297 6 7035 2.0 0.5 1.2 2.7 7061 chr2L 19147375 intron brat + chr2L 19150906 intron brat + chr2L 19154436 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-256 237 chr2L 19163372 19163397 chr2L 19163453 19163478 11 81 2.5 2.5 2.5 3.1 106 chr2L 19163372 intron brat + chr2L 19163425 intron brat + chr2L 19163478 intron brat + chr2L_11_19160001 chr2L_19160001 RAL-256 238 chr2L 19189971 19190003 chr2L 19190124 19190156 5 154 1.0 3.5 2.2 1.6 185 chr2L 19189971 intergenic pigeon +,drl + chr2L 19190064 intergenic pigeon +,drl + chr2L 19190156 intergenic drl +,pigeon + chr2L_5_19190001 chr2L_19190001 RAL-256 239 chr2L 19199682 19199693 chr2L 19199757 19199770 4 76 4.5 4.0 4.2 0.8 88 chr2L 19199682 intron drl + chr2L 19199726 intron drl + chr2L 19199770 intron drl + chr2L_4_19195001 chr2L_19195001 RAL-256 240 chr2L 19199694 19199707 chr2L 19199755 19199778 8 69 3.0 3.5 3.2 1.9 84 chr2L 19199694 intron drl + chr2L 19199736 intron drl + chr2L 19199778 intron drl + chr2L_8_19195001 chr2L_19195001 RAL-256 241 chr2L 19237312 19237329 chr2L 19237412 19237428 6 98 3.0 4.5 3.8 1.2 116 chr2L 19237312 intergenic not near genes chr2L 19237370 intergenic not near genes chr2L 19237428 intergenic not near genes chr2L_6_19235001 chr2L_19235001 RAL-256 242 chr2L 19337563 19337592 chr2L 19338130 19338159 4 567 6.0 2.0 4.0 0.8 596 chr2L 19337563 intergenic not near genes chr2L 19337861 intergenic not near genes chr2L 19338159 intergenic not near genes chr2L_4_19335001 chr2L_19335001 RAL-256 243 chr2L 19345023 19345035 chr2L 19357232 19357234 blood 5 12207 3.5 5.0 4.2 1.0 12211 chr2L 19345023 intron dnt - chr2L 19351128 intron dnt - chr2L 19357234 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-256 244 chr2L 19357555 19357568 chr2L 19357638 19357658 5 89 2.5 4.0 3.2 1.2 103 chr2L 19357555 intron dnt - chr2L 19357606 intron dnt - chr2L 19357658 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-256 245 chr2L 19378343 19378373 chr2L 19378426 19378456 9 83 1.0 2.0 1.5 3.6 113 chr2L 19378343 intergenic not near genes chr2L 19378400 intergenic not near genes chr2L 19378456 intergenic not near genes chr2L_9_19375001 chr2L_19375001 RAL-256 246 chr2L 19380512 19380524 chr2L 19380592 19380604 4 80 3.0 2.0 2.5 1.1 92 chr2L 19380512 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380604 intergenic CG17350 + chr2L_4_19380001 chr2L_19380001 RAL-256 247 chr2L 19441068 19441085 chr2L 19441145 19441162 6 77 4.5 2.0 3.2 1.4 94 chr2L 19441068 intron CG10237 - chr2L 19441115 intron CG10237 - chr2L 19441162 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-256 248 chr2L 19560005 19560037 chr2L 19560258 19560289 4 252 1.0 2.0 1.5 1.6 284 chr2L 19560005 exon Tep5 + chr2L 19560147 exon Tep5 + chr2L 19560289 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-256 249 chr2L 19620097 19620131 chr2L 19621086 19621110 jockey 19 988 5.0 6.0 5.5 2.9 1013 chr2L 19620097 intron Lar + chr2L 19620604 intron Lar + chr2L 19621110 intron Lar + chr2L_19_19620001 chr2L_19620001 RAL-256 250 chr2L 19703536 19703567 chr2L 19712672 19712703 roo 12 9136 3.0 0.0 1.5 4.8 9167 chr2L 19703536 intron Lar + chr2L 19708120 intron Lar + chr2L 19712703 intron Lar + chr2L_12_19705001 chr2L_19705001 RAL-256 251 chr2L 19716692 19716725 chr2L 19716802 19716831 5 109 2.5 1.0 1.8 1.8 139 chr2L 19716692 intron Lar + chr2L 19716762 intron Lar + chr2L 19716831 intron Lar + chr2L_5_19715001 chr2L_19715001 RAL-256 252 chr2L 19730647 19730681 chr2L 19730730 19730763 7 78 2.0 1.0 1.5 2.8 116 chr2L 19730647 3` UTR Lar + chr2L 19730705 3` UTR Lar + chr2L 19730763 3` UTR Lar + chr2L_7_19730001 chr2L_19730001 RAL-256 253 chr2L 19737353 19737389 chr2L 19740822 19740838 1360 12 3464 3.0 3.0 3.0 3.0 3485 chr2L 19737353 intergenic Nf-YB + chr2L 19739096 intergenic not near genes chr2L 19740838 intergenic not near genes chr2L_12_19735001 chr2L_19735001 RAL-256 254 chr2L 19762808 19762838 chr2L 19763050 19763078 pogo 4 242 2.5 1.0 1.8 1.4 270 chr2L 19762808 5` UTR fbp - chr2L 19762943 intron fbp - chr2L 19763078 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-256 255 chr2L 19837279 19837309 chr2L 19837359 19837389 9 80 3.0 4.0 3.5 2.0 110 chr2L 19837279 intron sick + chr2L 19837334 intron sick + chr2L 19837389 intron sick + chr2L_9_19835001 chr2L_19835001 RAL-256 256 chr2L 20002541 20002559 chr2L 20002628 20002646 4 87 2.5 0.5 1.5 1.6 105 chr2L 20002541 intron CG43861 - chr2L 20002594 intron CG43861 - chr2L 20002646 intron CG43861 - chr2L_4_20000001 chr2L_20000001 RAL-256 257 chr2L 20272115 20272138 chr2L 20282826 20282849 copia 5 10711 2.0 1.5 1.8 1.8 10734 chr2L 20272115 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282849 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-256 258 chr2L 20287912 20287936 chr2L 20288027 20288052 8 114 2.5 6.0 4.2 1.5 140 chr2L 20287912 intergenic not near genes chr2L 20287982 intergenic not near genes chr2L 20288052 intergenic not near genes chr2L_8_20285001 chr2L_20285001 RAL-256 259 chr2L 20374660 20374687 chr2L 20374805 20374832 7 144 2.5 2.5 2.5 2.0 172 chr2L 20374660 intergenic not near genes chr2L 20374746 intergenic not near genes chr2L 20374832 intergenic not near genes chr2L_7_20370001 chr2L_20370001 RAL-256 260 chr2L 20552074 20552092 chr2L 20552140 20552170 5 76 2.5 2.5 2.5 1.4 96 chr2L 20552074 intergenic not near genes chr2L 20552122 intergenic not near genes chr2L 20552170 intergenic not near genes chr2L_5_20550001 chr2L_20550001 RAL-256 261 chr2L 20576224 20576251 chr2L 20583692 20583719 blood 7 7467 0.5 2.5 1.5 2.8 7495 chr2L 20576224 intergenic not near genes chr2L 20579972 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-256 262 chr2L 20607655 20607671 chr2L 20607718 20607750 6 70 1.5 4.5 3.0 1.5 95 chr2L 20607655 intron,3` UTR CR44909 -,CR43608 - chr2L 20607702 intron,3` UTR CR44909 -,CR43608 - chr2L 20607750 intron,3` UTR CR44909 -,CR43608 - chr2L_6_20605001 chr2L_20605001 RAL-256 263 chr2L 20761167 20761200 chr2L 20761250 20761253 7 78 1.5 2.5 2.0 2.3 86 chr2L 20761167 intron dia + chr2L 20761210 intron dia + chr2L 20761253 intron dia + chr2L_7_20760001 chr2L_20760001 RAL-256 264 chr2L 20826520 20826545 chr2L 20826600 20826625 6 80 3.0 4.5 3.8 1.2 105 chr2L 20826520 intron CG9331 + chr2L 20826572 intron CG9331 + chr2L 20826625 intron CG9331 + chr2L_6_20825001 chr2L_20825001 RAL-256 265 chr2L 20840032 20840057 chr2L 20840244 20840269 8 212 2.5 5.5 4.0 1.6 237 chr2L 20840032 intergenic not near genes chr2L 20840150 intergenic not near genes chr2L 20840269 intergenic CG31676 + chr2L_8_20840001 chr2L_20840001 RAL-256 266 chr2L 10476057 10476078 chr2L 20875591 20875593 4 10399522 20.0 8.5 14.2 0.3 10399536 chr2L 10476057 intergenic not near genes chr2L 15675825 intron,exon,exon CG4587 -,CG43923 -,CG43924 - chr2L 20875593 intron,intron CG43739 -,sky - chr2L_4_15675001 chr2L_15675001 RAL-256 267 chr2L 20976647 20976668 chr2L 20981462 20981483 X-element 4 4814 2.0 1.5 1.8 1.4 4836 chr2L 20976647 intron CG42238 - chr2L 20979065 intron CG42238 - chr2L 20981483 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-256 268 chr2L 20984736 20984770 chr2L 20984828 20984862 10 91 1.5 0.5 1.0 5.0 126 chr2L 20984736 intron CG42238 - chr2L 20984799 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_10_20980001 chr2L_20980001 RAL-256 269 chr2L 21020278 21020309 chr2L 21023954 21023986 NOF 7 3677 0.5 2.5 1.5 2.8 3708 chr2L 21020278 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-256 270 chr2L 21041145 21041162 chr2L 21049406 21049422 Tirant 4 8260 1.0 3.5 2.2 1.2 8277 chr2L 21041145 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049422 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-256 271 chr2L 21088930 21088948 chr2L 21089013 21089022 5 79 0.5 2.0 1.2 2.3 92 chr2L 21088930 intergenic ppk13 -,CG9259 + chr2L 21088976 intergenic ppk13 -,CG9259 + chr2L 21089022 intergenic ppk13 -,CG9259 + chr2L_5_21085001 chr2L_21085001 RAL-256 272 chr2L 21154170 21154182 chr2L 21154247 21154251 4 75 0.0 0.5 0.2 3.3 81 chr2L 21154170 intergenic E2f2 - chr2L 21154210 intergenic E2f2 - chr2L 21154251 intergenic E2f2 - chr2L_4_21150001 chr2L_21150001 RAL-256 273 chr2L 21755493 21755523 chr2L 21755616 21755647 7 123 1.0 1.5 1.2 3.2 154 chr2L 21755493 intron step - chr2L 21755570 intron step - chr2L 21755647 intron step - chr2L_7_21755001 chr2L_21755001 RAL-256 274 chr2L 21836392 21836426 chr2L 21836482 21836516 7 87 1.5 2.5 2.0 2.3 124 chr2L 21836392 3` UTR tsh + chr2L 21836454 3` UTR tsh + chr2L 21836516 3` UTR tsh + chr2L_7_21835001 chr2L_21835001 RAL-256 275 chr2L 21859333 21859347 chr2L 21859397 21859427 4 69 4.5 3.5 4.0 0.8 94 chr2L 21859333 intron CR44917 + chr2L 21859380 intron CR44917 + chr2L 21859427 intron CR44917 + chr2L_4_21855001 chr2L_21855001 RAL-256 276 chr2L 21934578 21934600 chr2L 21934701 21934719 4 122 2.0 4.5 3.2 1.0 141 chr2L 21934578 intergenic not near genes chr2L 21934648 intergenic not near genes chr2L 21934719 intergenic not near genes chr2L_4_21930001 chr2L_21930001 RAL-256 277 chr2L 21981686 21981714 chr2L 21990851 21990879 roo 10 9165 1.0 6.5 3.8 2.1 9193 chr2L 21981686 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-256 278 chr2L 22357062 22357085 chr2L 22357206 22357229 4 144 5.0 1.5 3.2 1.0 167 chr2L 22357062 intron CG17018 + chr2L 22357146 intron CG17018 + chr2L 22357229 intron CG17018 + chr2L_4_22355001 chr2L_22355001 RAL-256 279 chr2L 22548932 22548940 chr2L 22550153 22550164 1360 4 1223 0.5 3.5 2.0 1.3 1232 chr2L 22548932 intergenic CG17490 + chr2L 22549548 intergenic not near genes chr2L 22550164 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-256 280 chr2L 23168855 23168864 chr2L 23168931 23168938 6 75 10.5 3.0 6.8 0.8 83 chr2L 23168855 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168896 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168938 intron CG12567 - chr2L_6_23165001 chr2L_23165001 RAL-256 281 chr2R 529332 529354 chr2R 537957 537971 Max-element 5 8623 2.0 3.0 2.5 1.4 8639 chr2R 529332 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537971 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-256 282 chr2R 552754 552774 chr2R 553972 553991 1360 4 1218 3.5 2.5 3.0 1.0 1237 chr2R 552754 intron CG40378 + chr2R 553372 intron CG40378 + chr2R 553991 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-256 283 chr2R 552777 552788 chr2R 553969 553995 1360 4 1209 2.5 2.0 2.2 1.2 1218 chr2R 552777 intron CG40378 + chr2R 553386 intron CG40378 + chr2R 553995 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-256 284 chr2R 1082375 1082385 chr2R 1087148 1087161 Doc 4 4773 1.5 5.5 3.5 0.9 4786 chr2R 1082375 intron rl + chr2R 1084768 intron rl + chr2R 1087161 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-256 285 chr2R 4604551 4604571 chr2R 4604628 4604650 6 78 1.5 2.0 1.8 2.1 99 chr2R 4604551 intron p120ctn + chr2R 4604600 intron p120ctn + chr2R 4604650 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-256 286 chr2R 4622955 4622987 chr2R 4624114 4624146 1360 12 1157 1.5 2.5 2.0 4.0 1191 chr2R 4622955 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_12_4620001 chr2R_4620001 RAL-256 287 chr2R 4624643 4624671 chr2R 4626548 4626576 Bica 7 1903 2.0 0.5 1.2 3.2 1933 chr2R 4624643 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626576 intergenic not near genes chr2R_7_4625001 chr2R_4625001 RAL-256 288 chr2R 4750348 4750377 chr2R 4751505 4751533 1360 4 1156 1.0 2.5 1.8 1.4 1185 chr2R 4750348 intron conu + chr2R 4750940 intron conu + chr2R 4751533 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-256 289 chr2R 5008994 5009024 chr2R 5009303 5009320 8 307 3.0 3.0 3.0 2.0 326 chr2R 5008994 intron Ir41a + chr2R 5009157 intron Ir41a + chr2R 5009320 intron Ir41a + chr2R_8_5005001 chr2R_5005001 RAL-256 290 chr2R 5080798 5080816 chr2R 5080889 5080907 4 91 1.5 2.0 1.8 1.4 109 chr2R 5080798 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080907 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-256 291 chr2R 5192235 5192244 chr2R 5192337 5192343 4 101 3.0 3.0 3.0 1.0 108 chr2R 5192235 intron Nipped-A - chr2R 5192289 intron Nipped-A - chr2R 5192343 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-256 292 chr2R 5209779 5209808 chr2R 5210312 5210320 12 531 2.5 0.5 1.5 4.8 541 chr2R 5209779 intron Nipped-A - chr2R 5210050 intron Nipped-A - chr2R 5210320 intron Nipped-A - chr2R_12_5210001 chr2R_5210001 RAL-256 293 chr2R 5267607 5267627 chr2R 5267693 5267713 7 85 1.0 2.0 1.5 2.8 106 chr2R 5267607 intron d4 + chr2R 5267660 intron d4 + chr2R 5267713 intron d4 + chr2R_7_5265001 chr2R_5265001 RAL-256 294 chr2R 5472370 5472393 chr2R 5472464 5472487 7 93 0.0 4.0 2.0 2.3 117 chr2R 5472370 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472487 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-256 295 chr2R 5476352 5476384 chr2R 5476896 5476928 7 543 2.5 1.5 2.0 2.3 576 chr2R 5476352 intron CG30440 - chr2R 5476640 intron CG30440 - chr2R 5476928 intron CG30440 - chr2R_7_5475001 chr2R_5475001 RAL-256 296 chr2R 5491661 5491687 chr2R 5491754 5491780 5 93 1.5 2.0 1.8 1.8 119 chr2R 5491661 intron CG30440 - chr2R 5491720 intron CG30440 - chr2R 5491780 intron CG30440 - chr2R_5_5490001 chr2R_5490001 RAL-256 297 chr2R 5664280 5664312 chr2R 5664360 5664392 5 77 3.5 2.0 2.8 1.3 112 chr2R 5664280 5` UTR CR45472 + chr2R 5664336 intron CR45472 + chr2R 5664392 intron CR45472 + chr2R_5_5660001 chr2R_5660001 RAL-256 298 chr2R 5861297 5861319 chr2R 5861417 5861440 9 121 1.0 3.5 2.2 2.8 143 chr2R 5861297 intergenic dpr12 + chr2R 5861368 intergenic not near genes chr2R 5861440 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-256 299 chr2R 5869274 5869300 chr2R 5874350 5874374 flea 8 5076 4.0 4.5 4.2 1.5 5100 chr2R 5869274 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874374 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-256 300 chr2R 5878930 5878956 chr2R 5879010 5879033 4 78 0.0 0.5 0.2 3.3 103 chr2R 5878930 intergenic CG44438 - chr2R 5878982 intergenic CG44438 - chr2R 5879033 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-256 301 chr2R 6096727 6096751 chr2R 6101917 6101928 BS 8 5192 2.0 2.5 2.2 2.5 5201 chr2R 6096727 intron EcR - chr2R 6099328 intron EcR - chr2R 6101928 intron EcR - chr2R_8_6095001 chr2R_6095001 RAL-256 302 chr2R 6129334 6129347 chr2R 6129404 6129425 4 76 1.5 0.5 1.0 2.0 91 chr2R 6129334 intron EcR - chr2R 6129380 intron EcR - chr2R 6129425 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-256 303 chr2R 6518072 6518108 chr2R 6518157 6518193 8 84 1.5 1.5 1.5 3.2 121 chr2R 6518072 intron jing + chr2R 6518132 intron jing + chr2R 6518193 intron jing + chr2R_8_6515001 chr2R_6515001 RAL-256 304 chr2R 6532687 6532693 chr2R 6532776 6532803 5 99 3.0 4.0 3.5 1.1 116 chr2R 6532687 intron,3` UTR jing +,CR43905 - chr2R 6532745 intron,3` UTR jing +,CR43905 - chr2R 6532803 intron,3` UTR jing +,CR43905 - chr2R_5_6530001 chr2R_6530001 RAL-256 305 chr2R 6738885 6738893 chr2R 6739107 6739127 5 222 16.0 12.5 14.2 0.3 242 chr2R 6738885 intron l(2)01289 - chr2R 6739006 intron l(2)01289 - chr2R 6739127 intron l(2)01289 - chr2R_5_6735001 chr2R_6735001 RAL-256 306 chr2R 6759014 6759035 chr2R 6759093 6759114 6 79 1.0 4.0 2.5 1.7 100 chr2R 6759014 intergenic CG9436 - chr2R 6759064 intergenic CG9436 - chr2R 6759114 intergenic CG9436 - chr2R_6_6755001 chr2R_6755001 RAL-256 307 chr2R 6791391 6791429 chr2R 6791477 6791516 10 82 0.5 1.5 1.0 5.0 125 chr2R 6791391 intron Epac - chr2R 6791454 intron Epac - chr2R 6791516 intron Epac - chr2R_10_6790001 chr2R_6790001 RAL-256 308 chr2R 6876223 6876249 chr2R 6876305 6876331 10 82 2.5 5.5 4.0 2.0 108 chr2R 6876223 intron,intron CR44169 +,Spn42Da - chr2R 6876277 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876331 5` UTR,intron CR44169 +,Spn42Da - chr2R_10_6875001 chr2R_6875001 RAL-256 309 chr2R 6878833 6878862 chr2R 6878963 6878992 12 130 40.5 34.5 37.5 0.3 159 chr2R 6878833 intron,intron CR44169 +,Spn42Da - chr2R 6878912 intron,5` UTR CR44169 +,Spn42Da - chr2R 6878992 intron CR44169 + chr2R_12_6875001 chr2R_6875001 RAL-256 310 chr2R 6890653 6890684 chr2R 6890747 6890778 19 93 4.0 5.5 4.8 3.3 125 chr2R 6890653 intergenic not near genes chr2R 6890716 intergenic not near genes chr2R 6890778 intergenic not near genes chr2R_19_6890001 chr2R_6890001 RAL-256 311 chr2R 6965266 6965295 chr2R 6965352 6965380 8 86 2.5 3.0 2.8 2.1 114 chr2R 6965266 intron,intron mim -,CheB42c - chr2R 6965323 intron,intron mim -,CheB42c - chr2R 6965380 intron,intron mim -,CheB42c - chr2R_8_6965001 chr2R_6965001 RAL-256 312 chr2R 7128607 7128630 chr2R 7129407 7129432 9 801 5.5 25.5 15.5 0.5 825 chr2R 7128607 exon Cyp9b1 - chr2R 7129020 exon Cyp9b1 - chr2R 7129432 exon Cyp9b1 - chr2R_9_7125001 chr2R_7125001 RAL-256 313 chr2R 7128651 7128684 chr2R 7129536 7129570 7 891 8.5 26.0 17.2 0.4 919 chr2R 7128651 exon Cyp9b1 - chr2R 7129110 exon Cyp9b1 - chr2R 7129570 intron Cyp9b1 - chr2R_7_7125001 chr2R_7125001 RAL-256 314 chr2R 7143629 7143650 chr2R 7143738 7143759 6 109 5.5 4.0 4.8 1.0 130 chr2R 7143629 intergenic not near genes chr2R 7143694 intergenic not near genes chr2R 7143759 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-256 315 chr2R 7160558 7160581 chr2R 7160635 7160659 4 78 1.0 1.0 1.0 2.0 101 chr2R 7160558 intron pk + chr2R 7160608 intron pk + chr2R 7160659 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-256 316 chr2R 7166937 7166952 chr2R 7167016 7167031 5 79 2.5 2.5 2.5 1.4 94 chr2R 7166937 intron pk + chr2R 7166984 intron pk + chr2R 7167031 intron pk + chr2R_5_7165001 chr2R_7165001 RAL-256 317 chr2R 7235832 7235850 chr2R 7240920 7240942 jockey 6 5091 3.5 6.5 5.0 1.0 5110 chr2R 7235832 intergenic not near genes chr2R 7238387 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-256 318 chr2R 7254809 7254840 chr2R 7254923 7254955 16 112 3.0 4.5 3.8 3.3 146 chr2R 7254809 5` UTR CR45280 + chr2R 7254882 5` UTR CR45280 + chr2R 7254955 5` UTR CR45280 + chr2R_16_7250001 chr2R_7250001 RAL-256 319 chr2R 7393372 7393403 chr2R 7393462 7393477 4 86 3.5 1.0 2.2 1.2 105 chr2R 7393372 intergenic CG1707 -,Gr43a - chr2R 7393424 intergenic CG1707 -,Gr43a - chr2R 7393477 intergenic CG1707 -,Gr43a - chr2R_4_7390001 chr2R_7390001 RAL-256 320 chr2R 7608408 7608432 chr2R 7613611 7613635 I-element 7 5202 2.0 2.5 2.2 2.2 5227 chr2R 7608408 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613635 intron CG1358 - chr2R_7_7610001 chr2R_7610001 RAL-256 321 chr2R 7694592 7694608 chr2R 7694676 7694692 6 84 1.5 2.0 1.8 2.1 100 chr2R 7694592 intron CG1399 - chr2R 7694642 intron CG1399 - chr2R 7694692 intron CG1399 - chr2R_6_7690001 chr2R_7690001 RAL-256 322 chr2R 7851261 7851294 chr2R 7851347 7851379 9 86 1.0 2.0 1.5 3.6 118 chr2R 7851261 intron Dgk - chr2R 7851320 intron Dgk - chr2R 7851379 intron Dgk - chr2R_9_7850001 chr2R_7850001 RAL-256 323 chr2R 7869192 7869208 chr2R 7873977 7873993 Doc 7 4786 3.5 4.5 4.0 1.4 4801 chr2R 7869192 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7873993 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-256 324 chr2R 7916426 7916457 chr2R 7916509 7916542 5 85 0.0 2.5 1.2 2.3 116 chr2R 7916426 5` UTR CG12159 - chr2R 7916484 intergenic CG12159 -,Cul1 + chr2R 7916542 intergenic CG12159 -,Cul1 + chr2R_5_7915001 chr2R_7915001 RAL-256 325 chr2R 8105938 8105959 chr2R 8106029 8106050 13 91 5.0 2.5 3.8 2.7 112 chr2R 8105938 5` UTR Cul4 - chr2R 8105994 intron Cul4 - chr2R 8106050 5` UTR Cul4 - chr2R_13_8105001 chr2R_8105001 RAL-256 326 chr2R 8160934 8160953 chr2R 8161024 8161043 1360 8 90 3.0 9.5 6.2 1.1 109 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_8_8160001 chr2R_8160001 RAL-256 327 chr2R 8236037 8236062 chr2R 8236118 8236142 4 81 1.0 0.5 0.8 2.2 105 chr2R 8236037 intergenic not near genes chr2R 8236090 intergenic not near genes chr2R 8236142 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-256 328 chr2R 8330862 8330880 chr2R 8331346 8331366 roo 4 486 3.5 0.5 2.0 1.3 504 chr2R 8330862 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331366 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-256 329 chr2R 8398216 8398243 chr2R 8402992 8403017 Doc 8 4776 4.0 1.0 2.5 2.3 4801 chr2R 8398216 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403017 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-256 330 chr2R 8452037 8452051 chr2R 8452120 8452134 6 83 6.0 1.5 3.8 1.2 97 chr2R 8452037 intergenic Mal-A1 - chr2R 8452086 intergenic Mal-A1 - chr2R 8452134 intergenic Mal-A1 - chr2R_6_8450001 chr2R_8450001 RAL-256 331 chr2R 8452052 8452065 chr2R 8452119 8452121 4 72 2.5 1.5 2.0 1.3 69 chr2R 8452052 intergenic Mal-A1 - chr2R 8452086 intergenic Mal-A1 - chr2R 8452121 intergenic Mal-A1 - chr2R_4_8450001 chr2R_8450001 RAL-256 332 chr2R 8488913 8488943 chr2R 8488998 8489028 7 83 1.0 2.5 1.8 2.5 115 chr2R 8488913 intron mtt - chr2R 8488970 intron mtt - chr2R 8489028 intron mtt - chr2R_7_8485001 chr2R_8485001 RAL-256 333 chr2R 8508757 8508790 chr2R 8508840 8508872 4 79 1.5 3.5 2.5 1.1 115 chr2R 8508757 intron mtt - chr2R 8508814 intron mtt - chr2R 8508872 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-256 334 chr2R 8566039 8566054 chr2R 8566991 8567006 1360 6 951 3.0 3.5 3.2 1.4 967 chr2R 8566039 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567006 5` UTR Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-256 335 chr2R 8595962 8595990 chr2R 8596040 8596068 4 75 0.0 0.5 0.2 3.3 106 chr2R 8595962 intergenic not near genes chr2R 8596015 intergenic not near genes chr2R 8596068 intergenic not near genes chr2R_4_8595001 chr2R_8595001 RAL-256 336 chr2R 8658245 8658265 chr2R 8658307 8658341 8 70 1.0 3.0 2.0 2.7 96 chr2R 8658245 intron ptc + chr2R 8658293 intron ptc + chr2R 8658341 intron ptc + chr2R_8_8655001 chr2R_8655001 RAL-256 337 chr2R 8722766 8722791 chr2R 8723005 8723032 pogo 8 238 4.0 9.0 6.5 1.1 266 chr2R 8722766 intron CG14767 - chr2R 8722899 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-256 338 chr2R 9151317 9151334 chr2R 9157787 9157804 Burdock 4 6469 1.5 2.5 2.0 1.3 6487 chr2R 9151317 3` UTR CG30345 + chr2R 9154560 intergenic not near genes chr2R 9157804 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-256 339 chr2R 9212702 9212720 chr2R 9213186 9213190 roo 5 479 6.0 4.5 5.2 0.8 488 chr2R 9212702 intergenic CR45309 + chr2R 9212946 intergenic CR45309 + chr2R 9213190 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-256 340 chr2R 9230223 9230237 chr2R 9230303 9230317 7 80 3.0 4.5 3.8 1.5 94 chr2R 9230223 intron hig - chr2R 9230270 intron hig - chr2R 9230317 exon hig - chr2R_7_9230001 chr2R_9230001 RAL-256 341 chr2R 9368132 9368154 chr2R 9368207 9368229 4 76 2.0 0.0 1.0 2.0 97 chr2R 9368132 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-256 342 chr2R 9699417 9699441 chr2R 9699504 9699528 4 87 3.0 1.0 2.0 1.3 111 chr2R 9699417 intergenic not near genes chr2R 9699472 intergenic not near genes chr2R 9699528 intergenic not near genes chr2R_4_9695001 chr2R_9695001 RAL-256 343 chr2R 9784134 9784139 chr2R 9784225 9784229 4 91 2.0 0.5 1.2 1.8 95 chr2R 9784134 intron CG1688 - chr2R 9784182 intron CG1688 - chr2R 9784229 intron CG1688 - chr2R_4_9780001 chr2R_9780001 RAL-256 344 chr2R 9871038 9871063 chr2R 9871524 9871549 roo 5 482 1.0 2.0 1.5 2.0 511 chr2R 9871038 intron cbx - chr2R 9871294 intron cbx - chr2R 9871549 intron,5` UTR cbx -,CG18446 + chr2R_5_9870001 chr2R_9870001 RAL-256 345 chr2R 9945440 9945466 chr2R 9945625 9945662 BS 6 192 1.0 0.0 0.5 4.0 222 chr2R 9945440 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945662 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-256 346 chr2R 10005849 10005883 chr2R 10007012 10007029 1360 14 1161 3.0 3.5 3.2 3.3 1180 chr2R 10005849 intron Pka-R2 - chr2R 10006439 intron Pka-R2 - chr2R 10007029 intron Pka-R2 - chr2R_14_10005001 chr2R_10005001 RAL-256 347 chr2R 10176122 10176154 chr2R 10176201 10176233 10 78 3.0 3.0 3.0 2.5 111 chr2R 10176122 intron KCNQ - chr2R 10176178 intron KCNQ - chr2R 10176233 intron KCNQ - chr2R_10_10175001 chr2R_10175001 RAL-256 348 chr2R 10190443 10190472 chr2R 10190526 10190549 9 79 1.0 4.0 2.5 2.6 106 chr2R 10190443 intron KCNQ - chr2R 10190496 intron KCNQ - chr2R 10190549 intron KCNQ - chr2R_9_10190001 chr2R_10190001 RAL-256 349 chr2R 10216195 10216223 chr2R 10216271 10216301 9 77 0.0 1.0 0.5 6.0 106 chr2R 10216195 intron,intron CG12912 -,Hr46 - chr2R 10216248 intron,intron CG12912 -,Hr46 - chr2R 10216301 intron,intron CG12912 -,Hr46 - chr2R_9_10215001 chr2R_10215001 RAL-256 350 chr2R 10266499 10266531 chr2R 10266590 10266602 5 82 1.5 1.5 1.5 2.0 103 chr2R 10266499 intron CG12910 + chr2R 10266550 intron CG12910 + chr2R 10266602 intron CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-256 351 chr2R 10352673 10352702 chr2R 10352750 10352779 6 77 1.0 2.0 1.5 2.4 106 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352779 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_6_10350001 chr2R_10350001 RAL-256 352 chr2R 10409070 10409086 chr2R 10409146 10409162 5 74 0.0 1.5 0.8 2.8 92 chr2R 10409070 intron CG42732 - chr2R 10409116 intron CG42732 - chr2R 10409162 intron,exon CG42732 -,CG33477 - chr2R_5_10405001 chr2R_10405001 RAL-256 353 chr2R 10454103 10454121 chr2R 10454180 10454198 5 77 2.0 3.5 2.8 1.3 95 chr2R 10454103 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454198 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-256 354 chr2R 10469021 10469056 chr2R 10469147 10469182 8 126 1.5 0.5 1.0 4.0 161 chr2R 10469021 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_8_10465001 chr2R_10465001 RAL-256 355 chr2R 10585577 10585587 chr2R 10594160 10594170 Tirant 6 8583 0.0 2.5 1.2 2.7 8593 chr2R 10585577 intron psq + chr2R 10589874 intron psq + chr2R 10594170 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-256 356 chr2R 10734576 10734611 chr2R 10734660 10734687 7 82 0.5 2.5 1.5 2.8 111 chr2R 10734576 intron CG7220 + chr2R 10734632 intron CG7220 + chr2R 10734687 intron CG7220 + chr2R_7_10730001 chr2R_10730001 RAL-256 357 chr2R 10948027 10948062 chr2R 10955576 10955612 17.6 14 7545 0.5 1.0 0.8 7.8 7585 chr2R 10948027 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_14_10950001 chr2R_10950001 RAL-256 358 chr2R 10976412 10976435 chr2R 10976495 10976519 6 84 0.5 2.0 1.2 2.7 107 chr2R 10976412 intergenic not near genes chr2R 10976466 intergenic not near genes chr2R 10976519 intergenic not near genes chr2R_6_10975001 chr2R_10975001 RAL-256 359 chr2R 11033748 11033762 chr2R 11033832 11033847 6 84 1.5 4.5 3.0 1.5 99 chr2R 11033748 intron luna - chr2R 11033798 intron luna - chr2R 11033847 intron luna - chr2R_6_11030001 chr2R_11030001 RAL-256 360 chr2R 11063368 11063389 chr2R 11068156 11068179 6 4788 10.0 8.5 9.2 0.6 4811 chr2R 11063368 intron luna - chr2R 11065774 intron luna - chr2R 11068179 intron luna - chr2R_6_11065001 chr2R_11065001 RAL-256 361 chr2R 11102870 11102888 chr2R 11102952 11102970 7 82 1.5 0.0 0.8 3.9 100 chr2R 11102870 intron luna - chr2R 11102920 intron luna - chr2R 11102970 intron luna - chr2R_7_11100001 chr2R_11100001 RAL-256 362 chr2R 11207823 11207844 chr2R 11208015 11208036 BS 5 192 3.5 0.5 2.0 1.7 213 chr2R 11207823 intron shn + chr2R 11207930 intron shn + chr2R 11208036 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-256 363 chr2R 11415526 11415549 chr2R 11418675 11418698 opus 5 3149 1.5 3.5 2.5 1.4 3172 chr2R 11415526 intron Drip - chr2R 11417112 intron Drip - chr2R 11418698 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-256 364 chr2R 11538306 11538324 chr2R 11538406 11538424 5 100 1.5 2.0 1.8 1.8 118 chr2R 11538306 intergenic not near genes chr2R 11538365 intergenic not near genes chr2R 11538424 intergenic not near genes chr2R_5_11535001 chr2R_11535001 RAL-256 365 chr2R 11558754 11558789 chr2R 11558853 11558888 13 94 3.0 4.5 3.8 2.7 134 chr2R 11558754 intergenic not near genes chr2R 11558821 intergenic not near genes chr2R 11558888 intergenic not near genes chr2R_13_11555001 chr2R_11555001 RAL-256 366 chr2R 11700444 11700470 chr2R 11700524 11700550 5 80 0.5 3.0 1.8 1.8 106 chr2R 11700444 intergenic Ir48b - chr2R 11700497 intergenic Ir48b - chr2R 11700550 intergenic Ir48b - chr2R_5_11700001 chr2R_11700001 RAL-256 367 chr2R 11934083 11934100 chr2R 11934161 11934181 4 80 1.0 1.0 1.0 2.0 98 chr2R 11934083 intergenic not near genes chr2R 11934132 intergenic not near genes chr2R 11934181 intergenic not near genes chr2R_4_11930001 chr2R_11930001 RAL-256 368 chr2R 12124828 12124861 chr2R 12124912 12124945 7 84 0.5 2.0 1.2 3.2 117 chr2R 12124828 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124945 intergenic not near genes chr2R_7_12120001 chr2R_12120001 RAL-256 369 chr2R 12187471 12187507 chr2R 12190088 12190123 60 2620 175.0 100.0 137.5 0.4 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_60_12185001 chr2R_12185001 RAL-256 370 chr2R 12481157 12481170 chr2R 12482942 12482966 roo 7 1789 2.5 3.0 2.8 1.8 1809 chr2R 12481157 exon Dh44-R2 + chr2R 12482062 intron Dh44-R2 + chr2R 12482966 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-256 371 chr2R 12501694 12501727 chr2R 12503854 12503884 Rt1c 5 2154 4.5 5.5 5.0 0.8 2190 chr2R 12501694 intron fdl - chr2R 12502789 intron fdl - chr2R 12503884 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-256 372 chr2R 12540476 12540497 chr2R 12540557 12540558 9 76 5.5 2.5 4.0 1.8 82 chr2R 12540476 intron fra + chr2R 12540517 intron fra + chr2R 12540558 intron fra + chr2R_9_12540001 chr2R_12540001 RAL-256 373 chr2R 12555443 12555475 chr2R 12556148 12556156 10 696 3.0 3.0 3.0 2.5 713 chr2R 12555443 intron fra + chr2R 12555800 intron fra + chr2R 12556156 intron fra + chr2R_10_12555001 chr2R_12555001 RAL-256 374 chr2R 12610734 12610744 chr2R 12610819 12610839 5 93 3.0 3.5 3.2 1.2 105 chr2R 12610734 intron Amph + chr2R 12610786 intron Amph + chr2R 12610839 intron Amph + chr2R_5_12610001 chr2R_12610001 RAL-256 375 chr2R 12663337 12663371 chr2R 12663416 12663451 12 79 4.0 2.0 3.0 3.0 114 chr2R 12663337 intron nemy - chr2R 12663394 intron nemy - chr2R 12663451 intron nemy - chr2R_12_12660001 chr2R_12660001 RAL-256 376 chr2R 12722068 12722093 chr2R 12722178 12722204 9 111 0.5 1.5 1.0 4.5 136 chr2R 12722068 intron CG42663 + chr2R 12722136 intron CG42663 + chr2R 12722204 intron CG42663 + chr2R_9_12720001 chr2R_12720001 RAL-256 377 chr2R 12739132 12739148 chr2R 12739208 12739224 4 74 4.0 6.0 5.0 0.7 92 chr2R 12739132 intron CG42663 + chr2R 12739178 intron CG42663 + chr2R 12739224 intron CG42663 + chr2R_4_12735001 chr2R_12735001 RAL-256 378 chr2R 12789294 12789318 chr2R 12797657 12797679 roo 6 8361 4.0 1.5 2.8 1.6 8385 chr2R 12789294 intron,3` UTR sca +,CR45137 - chr2R 12793486 intron,intron sca +,CR45137 - chr2R 12797679 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-256 379 chr2R 12807855 12807883 chr2R 12807953 12807981 5 97 0.0 2.0 1.0 2.5 126 chr2R 12807855 intergenic CG17580 + chr2R 12807918 intergenic CG17580 + chr2R 12807981 intergenic CG17580 + chr2R_5_12805001 chr2R_12805001 RAL-256 380 chr2R 12819453 12819477 chr2R 12824522 12824546 jockey 5 5066 2.0 0.5 1.2 2.3 5093 chr2R 12819453 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-256 381 chr2R 12826664 12826697 chr2R 12826748 12826781 6 85 11.0 17.0 14.0 0.4 117 chr2R 12826664 intergenic not near genes chr2R 12826722 intergenic not near genes chr2R 12826781 intergenic not near genes chr2R_6_12825001 chr2R_12825001 RAL-256 382 chr2R 13136837 13136865 chr2R 13141635 13141651 Doc 6 4796 3.5 4.5 4.0 1.2 4814 chr2R 13136837 exon Cap-G + chr2R 13139244 intron Cap-G + chr2R 13141651 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-256 383 chr2R 13309665 13309678 chr2R 13309783 13309796 4 118 1.0 0.0 0.5 2.7 131 chr2R 13309665 intergenic not near genes chr2R 13309730 intergenic not near genes chr2R 13309796 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-256 384 chr2R 13497254 13497289 chr2R 13497346 13497379 18 91 2.0 3.5 2.8 4.7 125 chr2R 13497254 intron drk - chr2R 13497316 intron drk - chr2R 13497379 exon drk - chr2R_18_13495001 chr2R_13495001 RAL-256 385 chr2R 13566266 13566290 chr2R 13566346 13566370 6 80 2.0 0.0 1.0 3.0 104 chr2R 13566266 intergenic not near genes chr2R 13566318 intergenic not near genes chr2R 13566370 intergenic not near genes chr2R_6_13565001 chr2R_13565001 RAL-256 386 chr2R 13574401 13574431 chr2R 13574481 13574501 6 79 4.5 3.0 3.8 1.2 100 chr2R 13574401 intergenic CG42808 - chr2R 13574451 intergenic CG42808 -,CR44365 + chr2R 13574501 intergenic CG42808 -,CR44365 + chr2R_6_13570001 chr2R_13570001 RAL-256 387 chr2R 13580521 13580534 chr2R 13580852 13580884 jockey 5 345 0.0 5.5 2.8 1.3 363 chr2R 13580521 3` UTR CG6191 - chr2R 13580702 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580884 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-256 388 chr2R 13721205 13721225 chr2R 13721286 13721305 10 80 8.5 3.5 6.0 1.4 100 chr2R 13721205 intron fas + chr2R 13721255 intron fas + chr2R 13721305 intron fas + chr2R_10_13720001 chr2R_13720001 RAL-256 389 chr2R 13768982 13769006 chr2R 13769081 13769105 9 98 4.0 2.5 3.2 2.1 123 chr2R 13768982 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769105 intergenic not near genes chr2R_9_13765001 chr2R_13765001 RAL-256 390 chr2R 13925859 13925868 chr2R 13926035 13926042 4 176 1.5 2.5 2.0 1.3 183 chr2R 13925859 intron shot - chr2R 13925950 intron shot - chr2R 13926042 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-256 391 chr2R 14266763 14266791 chr2R 14266839 14266867 13 75 2.5 3.0 2.8 3.4 104 chr2R 14266763 intron CG8547 - chr2R 14266815 intron CG8547 - chr2R 14266867 intron CG8547 - chr2R_13_14265001 chr2R_14265001 RAL-256 392 chr2R 14308823 14308840 chr2R 14308911 14308922 5 87 2.0 3.0 2.5 1.4 99 chr2R 14308823 intron Shroom + chr2R 14308872 intron Shroom + chr2R 14308922 intron Shroom + chr2R_5_14305001 chr2R_14305001 RAL-256 393 chr2R 14393865 14393894 chr2R 14393949 14393979 11 84 7.0 2.5 4.8 1.9 114 chr2R 14393865 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393979 intergenic not near genes chr2R_11_14390001 chr2R_14390001 RAL-256 394 chr2R 14467291 14467325 chr2R 14476443 14476476 roo 10 9151 3.0 3.0 3.0 2.5 9185 chr2R 14467291 intergenic not near genes chr2R 14471884 intergenic not near genes chr2R 14476476 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-256 395 chr2R 14530752 14530768 chr2R 14530834 14530850 6 82 2.5 4.5 3.5 1.3 98 chr2R 14530752 intron ttv + chr2R 14530801 intron ttv + chr2R 14530850 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-256 396 chr2R 14634284 14634308 chr2R 14634372 14634396 12 88 1.0 3.5 2.2 3.8 112 chr2R 14634284 intergenic not near genes chr2R 14634340 intergenic not near genes chr2R 14634396 intergenic not near genes chr2R_12_14630001 chr2R_14630001 RAL-256 397 chr2R 14653884 14653916 chr2R 14653968 14653973 8 79 2.5 1.5 2.0 2.7 89 chr2R 14653884 intergenic not near genes chr2R 14653928 intergenic not near genes chr2R 14653973 intergenic not near genes chr2R_8_14650001 chr2R_14650001 RAL-256 398 chr2R 14703399 14703419 chr2R 14703477 14703491 8 77 1.5 2.0 1.8 2.9 92 chr2R 14703399 intron mspo - chr2R 14703445 intron mspo - chr2R 14703491 intron mspo - chr2R_8_14700001 chr2R_14700001 RAL-256 399 chr2R 14911702 14911728 chr2R 14911825 14911851 5 123 2.5 2.0 2.2 1.6 149 chr2R 14911702 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-256 400 chr2R 14922152 14922168 chr2R 14922222 14922244 5 75 4.5 2.0 3.2 1.2 92 chr2R 14922152 intron CG10249 - chr2R 14922198 intron CG10249 - chr2R 14922244 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-256 401 chr2R 15004727 15004758 chr2R 15005056 15005087 jockey 8 329 2.0 2.0 2.0 2.7 360 chr2R 15004727 intergenic not near genes chr2R 15004907 intergenic not near genes chr2R 15005087 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-256 402 chr2R 15015455 15015486 chr2R 15022878 15022910 mdg1 8 7424 2.5 2.0 2.2 2.5 7455 chr2R 15015455 intron hbs + chr2R 15019182 intron hbs + chr2R 15022910 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-256 403 chr2R 15084977 15084994 chr2R 15092026 15092042 297 4 7048 4.0 4.0 4.0 0.8 7065 chr2R 15084977 intergenic not near genes chr2R 15088510 intergenic not near genes chr2R 15092042 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-256 404 chr2R 15119317 15119348 chr2R 15127797 15127829 Tirant 13 8480 2.5 2.5 2.5 3.7 8512 chr2R 15119317 intron chn + chr2R 15123573 intron chn + chr2R 15127829 intron chn + chr2R_13_15120001 chr2R_15120001 RAL-256 405 chr2R 15235067 15235093 chr2R 15235181 15235207 5 114 0.5 2.0 1.2 2.3 140 chr2R 15235067 intron Fs - chr2R 15235137 intron Fs - chr2R 15235207 intron Fs - chr2R_5_15235001 chr2R_15235001 RAL-256 406 chr2R 15283270 15283303 chr2R 15283365 15283398 7 91 2.0 3.5 2.8 1.8 128 chr2R 15283270 intron Trpm - chr2R 15283334 intron Trpm - chr2R 15283398 intron Trpm - chr2R_7_15280001 chr2R_15280001 RAL-256 407 chr2R 15941663 15941689 chr2R 15941748 15941774 4 84 4.0 8.0 6.0 0.6 111 chr2R 15941663 intergenic CG8299 - chr2R 15941718 intergenic CG8299 - chr2R 15941774 intergenic CG8299 - chr2R_4_15940001 chr2R_15940001 RAL-256 408 chr2R 16245413 16245427 chr2R 16245507 16245521 5 94 3.0 1.0 2.0 1.7 108 chr2R 16245413 intron CngA - chr2R 16245467 intron CngA - chr2R 16245521 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-256 409 chr2R 16380124 16380153 chr2R 16380222 16380251 7 96 3.5 0.0 1.8 2.5 127 chr2R 16380124 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380188 3` UTR CR45317 - chr2R 16380251 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_7_16380001 chr2R_16380001 RAL-256 410 chr2R 16503887 16503900 chr2R 16503977 16503990 4 90 2.0 4.0 3.0 1.0 103 chr2R 16503887 intron Sema-2a + chr2R 16503938 intron Sema-2a + chr2R 16503990 intron Sema-2a + chr2R_4_16500001 chr2R_16500001 RAL-256 411 chr2R 16617065 16617090 chr2R 16617144 16617165 9 77 0.0 2.0 1.0 4.5 100 chr2R 16617065 intron CG5065 + chr2R 16617115 intron CG5065 + chr2R 16617165 intron CG5065 + chr2R_9_16615001 chr2R_16615001 RAL-256 412 chr2R 16846311 16846339 chr2R 16846453 16846465 8 133 5.0 2.5 3.8 1.7 154 chr2R 16846311 intergenic CR44466 + chr2R 16846388 intergenic CR44466 + chr2R 16846465 intergenic CR44466 + chr2R_8_16845001 chr2R_16845001 RAL-256 413 chr2R 16918233 16918253 chr2R 16918309 16918330 7 77 3.5 5.0 4.2 1.3 97 chr2R 16918233 intergenic not near genes chr2R 16918282 intergenic not near genes chr2R 16918330 intergenic not near genes chr2R_7_16915001 chr2R_16915001 RAL-256 414 chr2R 17152926 17152958 chr2R 17153021 17153051 4 95 1.5 0.0 0.8 2.2 125 chr2R 17152926 intergenic not near genes chr2R 17152988 intergenic not near genes chr2R 17153051 intergenic not near genes chr2R_4_17150001 chr2R_17150001 RAL-256 415 chr2R 17162323 17162346 chr2R 17162408 17162431 6 85 3.5 1.0 2.2 1.9 108 chr2R 17162323 intergenic not near genes chr2R 17162377 intergenic not near genes chr2R 17162431 intergenic not near genes chr2R_6_17160001 chr2R_17160001 RAL-256 416 chr2R 17236513 17236541 chr2R 17241717 17241745 copia 5 5203 2.0 1.5 1.8 1.8 5232 chr2R 17236513 intron mbl + chr2R 17239129 intron mbl + chr2R 17241745 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-256 417 chr2R 17395290 17395318 chr2R 17395368 17395384 5 75 1.5 2.0 1.8 1.8 94 chr2R 17395290 intron Sip1 + chr2R 17395337 intron Sip1 + chr2R 17395384 intron Sip1 + chr2R_5_17395001 chr2R_17395001 RAL-256 418 chr2R 17470330 17470351 chr2R 17470410 17470431 4 80 1.0 0.5 0.8 2.2 101 chr2R 17470330 intron qkr54B + chr2R 17470380 intron qkr54B + chr2R 17470431 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-256 419 chr2R 17637829 17637846 chr2R 17637909 17637926 4 80 0.0 1.5 0.8 2.2 97 chr2R 17637829 intron CG10936 - chr2R 17637878 intron CG10936 - chr2R 17637926 intron CG10936 - chr2R_4_17635001 chr2R_17635001 RAL-256 420 chr2R 17784029 17784057 chr2R 17784270 17784298 pogo 13 239 2.0 5.0 3.5 2.9 269 chr2R 17784029 intergenic mir-31a - chr2R 17784164 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_13_17780001 chr2R_17780001 RAL-256 421 chr2R 17835038 17835060 chr2R 17835131 17835154 8 91 4.0 3.0 3.5 1.8 116 chr2R 17835038 intron grh + chr2R 17835096 intron grh + chr2R 17835154 intron grh + chr2R_8_17835001 chr2R_17835001 RAL-256 422 chr2R 17885418 17885439 chr2R 17885536 17885557 7 118 2.5 0.0 1.2 3.2 139 chr2R 17885418 intron Elk + chr2R 17885488 intron Elk + chr2R 17885557 intron Elk + chr2R_7_17885001 chr2R_17885001 RAL-256 423 chr2R 17961460 17961479 chr2R 17961748 17961764 4 287 4.5 2.5 3.5 0.9 304 chr2R 17961460 intergenic not near genes chr2R 17961612 intergenic not near genes chr2R 17961764 intergenic not near genes chr2R_4_17960001 chr2R_17960001 RAL-256 424 chr2R 18308288 18308319 chr2R 18308392 18308425 17 105 4.0 4.0 4.0 3.4 137 chr2R 18308288 intron sbb - chr2R 18308356 intron sbb - chr2R 18308425 intron sbb - chr2R_17_18305001 chr2R_18305001 RAL-256 425 chr2R 18358395 18358418 chr2R 18372606 18372630 roo 8 14212 0.5 3.0 1.8 2.9 14235 chr2R 18358395 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372630 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-256 426 chr2R 18528193 18528222 chr2R 18528278 18528307 13 82 0.5 3.5 2.0 4.3 114 chr2R 18528193 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528307 intron CG10924 + chr2R_13_18525001 chr2R_18525001 RAL-256 427 chr2R 18575814 18575831 chr2R 18582001 18582019 3S18 4 6187 2.0 3.0 2.5 1.1 6205 chr2R 18575814 intron GEFmeso - chr2R 18578916 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-256 428 chr2R 18587974 18587998 chr2R 18588100 18588124 6 126 0.0 1.0 0.5 4.0 150 chr2R 18587974 intron GEFmeso - chr2R 18588049 intron GEFmeso - chr2R 18588124 intron GEFmeso - chr2R_6_18585001 chr2R_18585001 RAL-256 429 chr2R 18590867 18590884 chr2R 18600019 18600036 roo 7 9151 5.0 2.0 3.5 1.6 9169 chr2R 18590867 intron GEFmeso - chr2R 18595452 intron GEFmeso - chr2R 18600036 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-256 430 chr2R 18646414 18646432 chr2R 18646559 18646577 5 145 2.0 4.5 3.2 1.2 163 chr2R 18646414 intron SP2637 - chr2R 18646496 intron SP2637 - chr2R 18646577 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-256 431 chr2R 18662362 18662376 chr2R 18662445 18662459 7 83 3.0 0.0 1.5 2.8 97 chr2R 18662362 intergenic not near genes chr2R 18662410 intergenic not near genes chr2R 18662459 intergenic not near genes chr2R_7_18660001 chr2R_18660001 RAL-256 432 chr2R 18678528 18678541 chr2R 18678645 18678652 4 117 3.5 0.0 1.8 1.4 124 chr2R 18678528 intergenic CG44434 -,CG44435 - chr2R 18678590 intergenic CG44434 -,CG44435 - chr2R 18678652 intergenic CG44434 -,CG44435 - chr2R_4_18675001 chr2R_18675001 RAL-256 433 chr2R 18692900 18692921 chr2R 18692987 18693008 5 87 2.5 1.5 2.0 1.7 108 chr2R 18692900 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_5_18690001 chr2R_18690001 RAL-256 434 chr2R 18778215 18778219 chr2R 18778300 18778309 4 88 4.5 2.5 3.5 0.9 94 chr2R 18778215 intergenic not near genes chr2R 18778262 intergenic not near genes chr2R 18778309 intergenic not near genes chr2R_4_18775001 chr2R_18775001 RAL-256 435 chr2R 18812079 18812108 chr2R 18812157 18812186 12 77 2.5 2.0 2.2 3.8 107 chr2R 18812079 intron CG15096 - chr2R 18812132 intron CG15096 - chr2R 18812186 intron CG15096 - chr2R_12_18810001 chr2R_18810001 RAL-256 436 chr2R 18953157 18953177 chr2R 18953244 18953264 5 87 3.5 0.0 1.8 1.8 107 chr2R 18953157 intron sano + chr2R 18953210 intron sano + chr2R 18953264 intron sano + chr2R_5_18950001 chr2R_18950001 RAL-256 437 chr2R 19168738 19168754 chr2R 19168819 19168835 5 81 3.5 1.0 2.2 1.6 97 chr2R 19168738 intron CG10737 + chr2R 19168786 intron CG10737 + chr2R 19168835 intron CG10737 + chr2R_5_19165001 chr2R_19165001 RAL-256 438 chr2R 19373688 19373716 chr2R 19373867 19373891 11 180 2.0 6.5 4.2 2.1 203 chr2R 19373688 5` UTR CG9416 - chr2R 19373790 intergenic CG9416 - chr2R 19373891 intergenic CG9416 - chr2R_11_19370001 chr2R_19370001 RAL-256 439 chr2R 19582906 19582927 chr2R 19582985 19583006 5 79 2.0 0.0 1.0 2.5 100 chr2R 19582906 intron sm - chr2R 19582956 intron sm - chr2R 19583006 intron sm - chr2R_5_19580001 chr2R_19580001 RAL-256 440 chr2R 19776598 19776630 chr2R 19779921 19779953 jockey 7 3323 2.5 2.0 2.2 2.2 3355 chr2R 19776598 intergenic not near genes chr2R 19778276 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-256 441 chr2R 19909477 19909502 chr2R 19909556 19909581 10 79 3.0 3.5 3.2 2.4 104 chr2R 19909477 intergenic CR44573 - chr2R 19909529 intergenic CR44573 - chr2R 19909581 intergenic CR44573 - chr2R_10_19905001 chr2R_19905001 RAL-256 442 chr2R 19985479 19985500 chr2R 19985574 19985597 5 93 1.0 6.0 3.5 1.1 118 chr2R 19985479 intergenic not near genes chr2R 19985538 intergenic not near genes chr2R 19985597 intergenic not near genes chr2R_5_19985001 chr2R_19985001 RAL-256 443 chr2R 20031930 20031939 chr2R 20032026 20032035 4 96 3.5 5.5 4.5 0.7 105 chr2R 20031930 intergenic not near genes chr2R 20031982 intergenic not near genes chr2R 20032035 intergenic not near genes chr2R_4_20030001 chr2R_20030001 RAL-256 444 chr2R 20326761 20326789 chr2R 20326838 20326866 8 76 3.5 1.5 2.5 2.3 105 chr2R 20326761 5` UTR MED8 - chr2R 20326814 intergenic MED8 -,CG8929 + chr2R 20326866 intergenic MED8 -,CG8929 + chr2R_8_20325001 chr2R_20325001 RAL-256 445 chr2R 20382334 20382356 chr2R 20382419 20382440 9 84 2.0 3.5 2.8 2.4 106 chr2R 20382334 intergenic not near genes chr2R 20382387 intergenic not near genes chr2R 20382440 intergenic not near genes chr2R_9_20380001 chr2R_20380001 RAL-256 446 chr2R 20432480 20432497 chr2R 20432576 20432591 4 92 1.5 3.5 2.5 1.1 111 chr2R 20432480 intron CG12484 + chr2R 20432536 intron CG12484 + chr2R 20432591 intron CG12484 + chr2R_4_20430001 chr2R_20430001 RAL-256 447 chr2R 20592580 20592598 chr2R 20592661 20592679 4 81 3.0 1.0 2.0 1.3 99 chr2R 20592580 intron bl + chr2R 20592630 intron bl + chr2R 20592679 intron bl + chr2R_4_20590001 chr2R_20590001 RAL-256 448 chr2R 20783312 20783330 chr2R 20788084 20788102 F-element 4 4772 1.5 1.5 1.5 1.6 4790 chr2R 20783312 intergenic not near genes chr2R 20785707 intergenic not near genes chr2R 20788102 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-256 449 chr2R 20916443 20916463 chr2R 20916578 20916590 9 134 3.5 2.5 3.0 2.2 147 chr2R 20916443 intergenic Rx + chr2R 20916516 intergenic Rx + chr2R 20916590 intergenic Rx + chr2R_9_20915001 chr2R_20915001 RAL-256 450 chr2R 21040868 21040893 chr2R 21040944 21040968 7 75 0.5 2.5 1.5 2.8 100 chr2R 21040868 intergenic not near genes chr2R 21040918 intergenic not near genes chr2R 21040968 intergenic not near genes chr2R_7_21040001 chr2R_21040001 RAL-256 451 chr2R 21060640 21060674 chr2R 21060722 21060756 4 82 0.5 3.0 1.8 1.4 116 chr2R 21060640 intergenic CG15653 -,mRpL54 + chr2R 21060698 intergenic mRpL54 +,CG15653 - chr2R 21060756 intergenic mRpL54 +,CG15653 - chr2R_4_21060001 chr2R_21060001 RAL-256 452 chr2R 21075684 21075704 chr2R 21075771 21075791 6 87 1.0 3.5 2.2 1.9 107 chr2R 21075684 intron Treh + chr2R 21075738 intron Treh + chr2R 21075791 intron Treh + chr2R_6_21075001 chr2R_21075001 RAL-256 453 chr2R 21370517 21370539 chr2R 21370624 21370646 4 107 1.5 2.0 1.8 1.4 129 chr2R 21370517 intron cv-2 - chr2R 21370582 intron cv-2 - chr2R 21370646 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-256 454 chr2R 21408375 21408407 chr2R 21408467 21408499 5 92 2.0 0.5 1.2 2.3 124 chr2R 21408375 intron Sdc - chr2R 21408437 intron Sdc - chr2R 21408499 intron Sdc - chr2R_5_21405001 chr2R_21405001 RAL-256 455 chr2R 21710949 21710967 chr2R 21711046 21711063 4 97 1.5 1.0 1.2 1.8 114 chr2R 21710949 intron,intron HmgD +,CG30403 - chr2R 21711006 intron,intron HmgD +,CG30403 - chr2R 21711063 intron,intron HmgD +,CG30403 - chr2R_4_21710001 chr2R_21710001 RAL-256 456 chr2R 21721583 21721608 chr2R 21721664 21721696 5 84 2.0 0.0 1.0 2.5 113 chr2R 21721583 intron LBR + chr2R 21721640 intron LBR + chr2R 21721696 intron LBR + chr2R_5_21720001 chr2R_21720001 RAL-256 457 chr2R 21738275 21738311 chr2R 21747435 21747454 roo 6 9157 1.0 0.5 0.8 3.3 9179 chr2R 21738275 intergenic not near genes chr2R 21742864 intergenic not near genes chr2R 21747454 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-256 458 chr2R 21886129 21886161 chr2R 21886208 21886240 6 79 2.0 0.0 1.0 3.0 111 chr2R 21886129 intron Fili + chr2R 21886184 intron Fili + chr2R 21886240 intron Fili + chr2R_6_21885001 chr2R_21885001 RAL-256 459 chr2R 22072688 22072705 chr2R 22072773 22072774 6 82 1.5 6.0 3.8 1.2 86 chr2R 22072688 intron CG11474 - chr2R 22072731 intron CG11474 - chr2R 22072774 intron CG11474 - chr2R_6_22070001 chr2R_22070001 RAL-256 460 chr2R 22179215 22179226 chr2R 22179298 22179309 6 82 0.5 4.5 2.5 1.7 94 chr2R 22179215 intron CG11170 - chr2R 22179262 intron CG11170 - chr2R 22179309 intron CG11170 - chr2R_6_22175001 chr2R_22175001 RAL-256 461 chr2R 22185692 22185705 chr2R 22185791 22185804 4 98 1.0 0.0 0.5 2.7 112 chr2R 22185692 3` UTR MED16 + chr2R 22185748 3` UTR MED16 + chr2R 22185804 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-256 462 chr2R 22248841 22248874 chr2R 22248918 22248948 10 75 1.5 5.0 3.2 2.4 107 chr2R 22248841 intron dve + chr2R 22248894 intron dve + chr2R 22248948 intron dve + chr2R_10_22245001 chr2R_22245001 RAL-256 463 chr2R 22279419 22279439 chr2R 22279567 22279586 6 147 2.5 1.0 1.8 2.1 167 chr2R 22279419 intron dve + chr2R 22279502 intron dve + chr2R 22279586 intron dve + chr2R_6_22275001 chr2R_22275001 RAL-256 464 chr2R 22349694 22349718 chr2R 22351473 22351502 jockey 9 1780 4.5 0.0 2.2 2.8 1808 chr2R 22349694 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351502 intron Liprin-gamma - chr2R_9_22350001 chr2R_22350001 RAL-256 465 chr2R 22359650 22359672 chr2R 22359751 22359775 5 101 2.0 4.5 3.2 1.2 125 chr2R 22359650 intron Liprin-gamma - chr2R 22359712 intron Liprin-gamma - chr2R 22359775 intron Liprin-gamma - chr2R_5_22355001 chr2R_22355001 RAL-256 466 chr2R 22377810 22377841 chr2R 22377895 22377915 6 81 2.0 0.0 1.0 3.0 105 chr2R 22377810 3` UTR Rtf1 + chr2R 22377862 3` UTR Rtf1 + chr2R 22377915 3` UTR Rtf1 + chr2R_6_22375001 chr2R_22375001 RAL-256 467 chr2R 22447170 22447195 chr2R 22447300 22447326 5 130 2.5 1.0 1.8 1.8 156 chr2R 22447170 intergenic not near genes chr2R 22447248 intergenic not near genes chr2R 22447326 intergenic not near genes chr2R_5_22445001 chr2R_22445001 RAL-256 468 chr2R 22680620 22680634 chr2R 22680698 22680712 7 78 5.5 0.0 2.8 1.8 92 chr2R 22680620 intergenic not near genes chr2R 22680666 intergenic not near genes chr2R 22680712 intergenic not near genes chr2R_7_22680001 chr2R_22680001 RAL-256 469 chr2R 22774963 22775001 chr2R 22775382 22775420 jockey 7 419 2.0 1.0 1.5 2.8 457 chr2R 22774963 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_7_22775001 chr2R_22775001 RAL-256 470 chr2R 22843032 22843051 chr2R 22844993 22845013 flea 4 1962 0.5 2.5 1.5 1.6 1981 chr2R 22843032 intergenic CG9826 + chr2R 22844022 intergenic not near genes chr2R 22845013 intergenic not near genes chr2R_4_22840001 chr2R_22840001 RAL-256 471 chr2R 22944822 22944847 chr2R 22945008 22945033 4 186 3.0 4.0 3.5 0.9 211 chr2R 22944822 exon CG42694 + chr2R 22944928 exon CG42694 + chr2R 22945033 exon CG42694 + chr2R_4_22940001 chr2R_22940001 RAL-256 472 chr2R 22954539 22954564 chr2R 22955508 22955534 6 970 2.0 8.0 5.0 1.0 995 chr2R 22954539 intergenic not near genes chr2R 22955036 intergenic not near genes chr2R 22955534 intergenic not near genes chr2R_6_22955001 chr2R_22955001 RAL-256 473 chr2R 22996188 22996204 chr2R 22996257 22996283 7 78 1.5 3.5 2.5 2.0 95 chr2R 22996188 intron,intron twi +,CG9896 - chr2R 22996236 intron,intron twi +,CG9896 - chr2R 22996283 intron,intron twi +,CG9896 - chr2R_7_22995001 chr2R_22995001 RAL-256 474 chr2R 23052651 23052687 chr2R 23052727 23052744 9 74 2.0 0.5 1.2 4.1 93 chr2R 23052651 intergenic not near genes chr2R 23052698 intergenic not near genes chr2R 23052744 intergenic not near genes chr2R_9_23050001 chr2R_23050001 RAL-256 475 chr2R 23054004 23054028 chr2R 23054082 23054096 6 75 2.0 0.5 1.2 2.7 92 chr2R 23054004 intergenic not near genes chr2R 23054050 intergenic not near genes chr2R 23054096 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-256 476 chr2R 23295414 23295439 chr2R 23295521 23295544 8 104 3.5 4.0 3.8 1.7 130 chr2R 23295414 intergenic not near genes chr2R 23295479 intergenic not near genes chr2R 23295544 intergenic not near genes chr2R_8_23295001 chr2R_23295001 RAL-256 477 chr2R 23356278 23356310 chr2R 23356366 23356383 11 87 3.0 2.5 2.8 2.9 105 chr2R 23356278 3` UTR Rpi + chr2R 23356330 3` UTR Rpi + chr2R 23356383 3` UTR,3` UTR Rpi +,CG3500 - chr2R_11_23355001 chr2R_23355001 RAL-256 478 chr2R 23427758 23427792 chr2R 23427900 23427934 13 140 2.0 2.0 2.0 4.3 176 chr2R 23427758 intron CG9815 - chr2R 23427846 intron CG9815 - chr2R 23427934 intron CG9815 - chr2R_13_23425001 chr2R_23425001 RAL-256 479 chr2R 23437232 23437247 chr2R 23437309 23437310 6 75 4.0 4.0 4.0 1.2 78 chr2R 23437232 intergenic not near genes chr2R 23437271 intergenic not near genes chr2R 23437310 intergenic not near genes chr2R_6_23435001 chr2R_23435001 RAL-256 480 chr2R 23481655 23481675 chr2R 23481741 23481762 5 87 0.0 4.0 2.0 1.7 107 chr2R 23481655 intron CG43795 + chr2R 23481708 intron CG43795 + chr2R 23481762 intron CG43795 + chr2R_5_23480001 chr2R_23480001 RAL-256 481 chr2R 23482888 23482913 chr2R 23482990 23483000 9 98 4.5 4.0 4.2 1.7 112 chr2R 23482888 intron CG43795 + chr2R 23482944 intron CG43795 + chr2R 23483000 intron CG43795 + chr2R_9_23480001 chr2R_23480001 RAL-256 482 chr2R 23508928 23508945 chr2R 23509045 23509062 4 117 1.5 2.0 1.8 1.4 134 chr2R 23508928 intergenic not near genes chr2R 23508995 intergenic not near genes chr2R 23509062 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-256 483 chr2R 23522420 23522446 chr2R 23522495 23522514 10 77 2.5 2.0 2.2 3.1 94 chr2R 23522420 intron RabX1 - chr2R 23522467 intron RabX1 - chr2R 23522514 intron RabX1 - chr2R_10_23520001 chr2R_23520001 RAL-256 484 chr2R 23563893 23563921 chr2R 23563972 23564001 6 79 1.0 1.0 1.0 3.0 108 chr2R 23563893 3` UTR Pi3K59F + chr2R 23563947 3` UTR Pi3K59F + chr2R 23564001 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_6_23560001 chr2R_23560001 RAL-256 485 chr2R 23588655 23588660 chr2R 23588746 23588751 4 91 8.5 1.5 5.0 0.7 96 chr2R 23588655 intron apt + chr2R 23588703 intron apt + chr2R 23588751 intron apt + chr2R_4_23585001 chr2R_23585001 RAL-256 486 chr2R 23758325 23758358 chr2R 23758401 23758434 8 76 2.0 5.0 3.5 1.8 109 chr2R 23758325 intron CG9850 - chr2R 23758380 intron CG9850 - chr2R 23758434 intron CG9850 - chr2R_8_23755001 chr2R_23755001 RAL-256 487 chr2R 23895130 23895151 chr2R 23895243 23895264 5 113 14.0 15.5 14.8 0.3 134 chr2R 23895130 5` UTR CG17658 + chr2R 23895197 intron CG17658 + chr2R 23895264 exon CG17658 + chr2R_5_23895001 chr2R_23895001 RAL-256 488 chr2R 23914298 23914332 chr2R 23921921 23921936 412 13 7620 3.5 1.5 2.5 3.7 7638 chr2R 23914298 exon kcc + chr2R 23918117 intron kcc + chr2R 23921936 intron kcc + chr2R_13_23915001 chr2R_23915001 RAL-256 489 chr2R 23986517 23986543 chr2R 23986597 23986623 6 80 1.0 1.5 1.2 2.7 106 chr2R 23986517 intron Phm - chr2R 23986570 intron Phm - chr2R 23986623 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-256 490 chr2R 24031384 24031409 chr2R 24031468 24031488 14 83 1.5 2.5 2.0 4.7 104 chr2R 24031384 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031488 intergenic Chi -,CG30172 - chr2R_14_24030001 chr2R_24030001 RAL-256 491 chr2R 24147067 24147098 chr2R 24154644 24154676 412 12 7576 4.0 8.0 6.0 1.7 7609 chr2R 24147067 intron Dat + chr2R 24150872 intron Dat + chr2R 24154676 intron Dat + chr2R_12_24150001 chr2R_24150001 RAL-256 492 chr2R 24212339 24212357 chr2R 24212437 24212454 4 98 0.0 1.5 0.8 2.2 115 chr2R 24212339 intergenic CG30419 - chr2R 24212396 intergenic CG30419 - chr2R 24212454 intergenic CG30419 - chr2R_4_24210001 chr2R_24210001 RAL-256 493 chr2R 24321135 24321168 chr2R 24321233 24321265 8 97 1.0 2.0 1.5 3.2 130 chr2R 24321135 intergenic not near genes chr2R 24321200 intergenic not near genes chr2R 24321265 intergenic not near genes chr2R_8_24320001 chr2R_24320001 RAL-256 494 chr2R 24329485 24329505 chr2R 24329568 24329588 8 83 3.5 3.5 3.5 1.8 103 chr2R 24329485 intron CR44810 + chr2R 24329536 intron CR44810 + chr2R 24329588 intron CR44810 + chr2R_8_24325001 chr2R_24325001 RAL-256 495 chr2R 24353430 24353453 chr2R 24361792 24361815 roo 6 8361 1.5 3.5 2.5 1.7 8385 chr2R 24353430 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361815 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-256 496 chr2R 24383825 24383854 chr2R 24383906 24383932 9 80 1.5 1.5 1.5 3.6 107 chr2R 24383825 intron mAChR-A - chr2R 24383878 intron mAChR-A - chr2R 24383932 exon mAChR-A - chr2R_9_24380001 chr2R_24380001 RAL-256 497 chr2R 24430920 24430947 chr2R 24431007 24431034 7 87 0.5 2.0 1.2 3.2 114 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430977 intergenic CG15873 -,Pgam5-2 - chr2R 24431034 intergenic Pgam5-2 -,CG15873 - chr2R_7_24430001 chr2R_24430001 RAL-256 498 chr2R 24548923 24548947 chr2R 24549006 24549029 6 82 3.5 2.0 2.8 1.6 106 chr2R 24548923 intron,intron CG4622 -,ITP + chr2R 24548976 intron,intron CG4622 -,ITP + chr2R 24549029 intron,intron CG4622 -,ITP + chr2R_6_24545001 chr2R_24545001 RAL-256 499 chr2R 24553633 24553663 chr2R 24553732 24553761 7 99 3.0 3.5 3.2 1.7 128 chr2R 24553633 intron,intron CG4622 -,ITP + chr2R 24553697 intron,intron CG4622 -,ITP + chr2R 24553761 intron,intron CG4622 -,ITP + chr2R_7_24550001 chr2R_24550001 RAL-256 500 chr2R 24590100 24590141 chr2R 24590203 24590214 4 98 0.0 4.0 2.0 1.3 114 chr2R 24590100 intron pio + chr2R 24590157 intron pio + chr2R 24590214 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-256 501 chr2R 24592946 24592978 chr2R 24593039 24593071 9 93 3.5 3.0 3.2 2.1 125 chr2R 24592946 intron pio + chr2R 24593008 intron pio + chr2R 24593071 intron pio + chr2R_9_24590001 chr2R_24590001 RAL-256 502 chr2R 24633993 24634015 chr2R 24634074 24634096 10 80 5.0 5.5 5.2 1.6 103 chr2R 24633993 intron CG13594 - chr2R 24634044 intron CG13594 - chr2R 24634096 intron CG13594 - chr2R_10_24630001 chr2R_24630001 RAL-256 503 chr2R 24636912 24636930 chr2R 24636997 24637016 7 86 3.0 0.0 1.5 2.8 104 chr2R 24636912 intron CG13594 - chr2R 24636964 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_7_24635001 chr2R_24635001 RAL-256 504 chr2R 24727883 24727914 chr2R 24735390 24735422 mdg1 10 7507 4.0 5.5 4.8 1.7 7539 chr2R 24727883 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735422 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-256 505 chr2R 24763623 24763642 chr2R 24765594 24765616 G2 14 1972 4.5 6.0 5.2 2.3 1993 chr2R 24763623 exon CG3894 + chr2R 24764620 intron CG3894 + chr2R 24765616 exon CG3894 + chr2R_14_24760001 chr2R_24760001 RAL-256 506 chr2R 24848655 24848687 chr2R 24848739 24848771 8 83 1.0 2.5 1.8 2.9 116 chr2R 24848655 intergenic CG3650 + chr2R 24848713 intergenic CG3650 + chr2R 24848771 intergenic CG3650 + chr2R_8_24845001 chr2R_24845001 RAL-256 507 chr2R 25102547 25102553 chr2R 25102716 25102721 4 169 2.0 6.5 4.2 0.8 174 chr2R 25102547 intron lov - chr2R 25102634 intron lov - chr2R 25102721 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-256 508 chr2R 25104785 25104803 chr2R 25104910 25104928 7 125 2.5 3.5 3.0 1.8 143 chr2R 25104785 intron lov - chr2R 25104856 intron lov - chr2R 25104928 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-256 509 chr2R 25253443 25253474 chr2R 25253519 25253550 8 76 4.0 1.5 2.8 2.1 107 chr2R 25253443 intron,intron CG9380 -,CG30428 + chr2R 25253496 intron,intron CG9380 -,CG30428 + chr2R 25253550 intron,intron CG9380 -,CG30428 + chr2R_8_25250001 chr2R_25250001 RAL-256 510 chr3L 68980 69011 chr3L 69067 69097 5 87 2.0 2.5 2.2 1.6 117 chr3L 68980 3` UTR Lsp1gamma + chr3L 69038 intergenic Lsp1gamma +,CR44510 + chr3L 69097 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-256 511 chr3L 165686 165706 chr3L 165824 165844 4 138 1.5 3.0 2.2 1.2 158 chr3L 165686 intron p130CAS + chr3L 165765 intron p130CAS + chr3L 165844 intron p130CAS + chr3L_4_165001 chr3L_165001 RAL-256 512 chr3L 338809 338840 chr3L 338903 338934 7 94 2.5 2.5 2.5 2.0 125 chr3L 338809 intron,intron Ptpmeg +,mthl10 - chr3L 338872 intron,intron Ptpmeg +,mthl10 - chr3L 338934 intron,intron Ptpmeg +,mthl10 - chr3L_7_335001 chr3L_335001 RAL-256 513 chr3L 402689 402706 chr3L 409742 409753 297 6 7052 6.5 5.0 5.8 0.9 7064 chr3L 402689 intergenic not near genes chr3L 406221 intergenic not near genes chr3L 409753 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-256 514 chr3L 617694 617719 chr3L 617800 617825 5 106 1.5 2.5 2.0 1.7 131 chr3L 617694 intergenic not near genes chr3L 617760 intergenic not near genes chr3L 617825 intergenic not near genes chr3L_5_615001 chr3L_615001 RAL-256 515 chr3L 668827 668844 chr3L 668920 668950 5 98 2.0 4.5 3.2 1.2 123 chr3L 668827 intergenic not near genes chr3L 668888 intergenic not near genes chr3L 668950 intergenic not near genes chr3L_5_665001 chr3L_665001 RAL-256 516 chr3L 688182 688210 chr3L 688258 688286 4 76 1.0 1.5 1.2 1.8 104 chr3L 688182 intergenic CG3344 -,CG32483 - chr3L 688234 intergenic CG3344 -,CG32483 - chr3L 688286 intergenic CG32483 -,CG3344 - chr3L_4_685001 chr3L_685001 RAL-256 517 chr3L 702159 702174 chr3L 702241 702256 12 82 3.5 2.0 2.8 3.2 97 chr3L 702159 intergenic not near genes chr3L 702208 intergenic not near genes chr3L 702256 intergenic not near genes chr3L_12_700001 chr3L_700001 RAL-256 518 chr3L 705901 705931 chr3L 705995 706027 5 96 0.0 1.5 0.8 2.8 126 chr3L 705901 intergenic CG13895 -,CR44514 + chr3L 705964 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-256 519 chr3L 798141 798171 chr3L 798378 798408 8 237 1.0 3.0 2.0 2.7 267 chr3L 798141 intergenic not near genes chr3L 798274 intergenic not near genes chr3L 798408 intergenic not near genes chr3L_8_795001 chr3L_795001 RAL-256 520 chr3L 858002 858029 chr3L 866482 866510 Tirant 8 8475 2.5 2.0 2.2 2.5 8508 chr3L 858002 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866510 5` UTR CG12502 + chr3L_8_860001 chr3L_860001 RAL-256 521 chr3L 875662 875682 chr3L 875749 875769 8 86 5.5 4.0 4.8 1.4 107 chr3L 875662 intron CG32479 + chr3L 875716 intron CG32479 + chr3L 875769 intron CG32479 + chr3L_8_875001 chr3L_875001 RAL-256 522 chr3L 900001 900014 chr3L 900084 900098 5 84 0.0 2.0 1.0 2.5 97 chr3L 900001 intergenic not near genes chr3L 900050 intergenic not near genes chr3L 900098 intergenic not near genes chr3L_5_900001 chr3L_900001 RAL-256 523 chr3L 922170 922183 chr3L 922247 922260 5 76 4.0 2.0 3.0 1.2 90 chr3L 922170 intron Glut1 + chr3L 922215 intron Glut1 + chr3L 922260 intron Glut1 + chr3L_5_920001 chr3L_920001 RAL-256 524 chr3L 925179 925201 chr3L 932605 932626 mdg1 6 7426 2.0 3.5 2.8 1.6 7447 chr3L 925179 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932626 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-256 525 chr3L 933909 933942 chr3L 934012 934043 6 103 1.0 1.0 1.0 3.0 134 chr3L 933909 intron Glut1 + chr3L 933976 intron Glut1 + chr3L 934043 intron Glut1 + chr3L_6_930001 chr3L_930001 RAL-256 526 chr3L 939777 939802 chr3L 940898 940902 jockey 5 1116 3.0 3.5 3.2 1.2 1125 chr3L 939777 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940902 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-256 527 chr3L 1015028 1015052 chr3L 1015140 1015159 6 109 4.0 5.5 4.8 1.0 131 chr3L 1015028 intron trio - chr3L 1015094 intron trio - chr3L 1015159 intron trio - chr3L_6_1015001 chr3L_1015001 RAL-256 528 chr3L 1031575 1031614 chr3L 1031651 1031676 10 69 0.5 3.0 1.8 3.6 101 chr3L 1031575 intron trio - chr3L 1031626 intron trio - chr3L 1031676 intron trio - chr3L_10_1030001 chr3L_1030001 RAL-256 529 chr3L 1040552 1040574 chr3L 1040636 1040658 7 84 2.5 4.5 3.5 1.6 106 chr3L 1040552 intron bab1 - chr3L 1040605 intron bab1 - chr3L 1040658 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-256 530 chr3L 1047354 1047384 chr3L 1055163 1055196 412 6 7802 0.0 2.0 1.0 3.0 7842 chr3L 1047354 intron bab1 - chr3L 1051275 intron bab1 - chr3L 1055196 intron bab1 - chr3L_6_1050001 chr3L_1050001 RAL-256 531 chr3L 1061425 1061449 chr3L 1061503 1061527 7 78 4.0 3.5 3.8 1.5 102 chr3L 1061425 intron bab1 - chr3L 1061476 intron bab1 - chr3L 1061527 intron bab1 - chr3L_7_1060001 chr3L_1060001 RAL-256 532 chr3L 1077763 1077778 chr3L 1078039 1078054 7 276 2.0 0.5 1.2 3.2 291 chr3L 1077763 intron bab1 - chr3L 1077908 intron bab1 - chr3L 1078054 intron bab1 - chr3L_7_1075001 chr3L_1075001 RAL-256 533 chr3L 1109643 1109667 chr3L 1109728 1109755 8 85 3.0 4.0 3.5 1.8 112 chr3L 1109643 intergenic not near genes chr3L 1109699 intergenic not near genes chr3L 1109755 intergenic not near genes chr3L_8_1105001 chr3L_1105001 RAL-256 534 chr3L 1154137 1154163 chr3L 1163287 1163312 roo 5 9149 0.5 1.0 0.8 2.8 9175 chr3L 1154137 intron bab2 - chr3L 1158724 intron bab2 - chr3L 1163312 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-256 535 chr3L 1219594 1219622 chr3L 1227327 1227355 412 12 7731 2.5 2.5 2.5 3.4 7761 chr3L 1219594 intron mwh + chr3L 1223474 intron mwh + chr3L 1227355 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-256 536 chr3L 1310982 1310996 chr3L 1315843 1315875 22 4861 41.0 36.0 38.5 0.6 4893 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_22_1310001 chr3L_1310001 RAL-256 537 chr3L 1347159 1347189 chr3L 1347243 1347258 9 81 2.5 4.0 3.2 2.1 99 chr3L 1347159 intron Ptp61F - chr3L 1347208 intron Ptp61F - chr3L 1347258 intron Ptp61F - chr3L_9_1345001 chr3L_1345001 RAL-256 538 chr3L 1385182 1385204 chr3L 1385270 1385292 7 88 1.5 1.5 1.5 2.8 110 chr3L 1385182 intron,intron Ptp61F -,ru + chr3L 1385237 intron,intron Ptp61F -,ru + chr3L 1385292 intron,intron Ptp61F -,ru + chr3L_7_1385001 chr3L_1385001 RAL-256 539 chr3L 1396738 1396749 chr3L 1396822 1396832 4 84 4.5 4.0 4.2 0.8 94 chr3L 1396738 intron Ptp61F - chr3L 1396785 intron Ptp61F - chr3L 1396832 intron Ptp61F - chr3L_4_1395001 chr3L_1395001 RAL-256 540 chr3L 1415777 1415803 chr3L 1415859 1415885 9 82 5.5 2.5 4.0 1.8 108 chr3L 1415777 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415885 intron Ptp61F - chr3L_9_1415001 chr3L_1415001 RAL-256 541 chr3L 1506008 1506032 chr3L 1513605 1513629 17.6 11 7596 1.0 5.0 3.0 2.8 7621 chr3L 1506008 intron,intron Psa +,cue - chr3L 1509818 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_11_1505001 chr3L_1505001 RAL-256 542 chr3L 1569522 1569531 chr3L 1569598 1569607 4 76 3.5 4.5 4.0 0.8 85 chr3L 1569522 5` UTR CG12004 + chr3L 1569564 intron CG12004 + chr3L 1569607 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-256 543 chr3L 1754692 1754714 chr3L 1754811 1754832 5 118 3.5 6.5 5.0 0.8 140 chr3L 1754692 intron Cht2 - chr3L 1754762 intron Cht2 - chr3L 1754832 intron Cht2 - chr3L_5_1750001 chr3L_1750001 RAL-256 544 chr3L 2016074 2016099 chr3L 2016209 2016235 7 135 0.5 0.0 0.2 5.8 161 chr3L 2016074 intergenic not near genes chr3L 2016154 intergenic not near genes chr3L 2016235 intergenic not near genes chr3L_7_2015001 chr3L_2015001 RAL-256 545 chr3L 2025521 2025545 chr3L 2025591 2025622 16 72 4.5 4.5 4.5 2.9 101 chr3L 2025521 intergenic not near genes chr3L 2025572 intergenic not near genes chr3L 2025622 intergenic not near genes chr3L_16_2025001 chr3L_2025001 RAL-256 546 chr3L 2139207 2139233 chr3L 2139287 2139311 7 80 2.5 3.0 2.8 1.8 104 chr3L 2139207 intron zormin - chr3L 2139259 intron zormin - chr3L 2139311 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-256 547 chr3L 2168788 2168808 chr3L 2168877 2168898 6 90 2.5 4.5 3.5 1.3 110 chr3L 2168788 intron CG15879 - chr3L 2168843 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-256 548 chr3L 2227721 2227748 chr3L 2227805 2227812 10 80 1.5 4.0 2.8 2.6 91 chr3L 2227721 intergenic not near genes chr3L 2227766 intergenic not near genes chr3L 2227812 intergenic not near genes chr3L_10_2225001 chr3L_2225001 RAL-256 549 chr3L 2277976 2278009 chr3L 2278172 2278205 9 195 4.5 1.5 3.0 2.2 229 chr3L 2277976 3` UTR yellow-g2 + chr3L 2278090 intergenic yellow-g2 + chr3L 2278205 intergenic yellow-g2 + chr3L_9_2275001 chr3L_2275001 RAL-256 550 chr3L 2308002 2308035 chr3L 2308108 2308141 4 106 3.5 2.5 3.0 1.0 139 chr3L 2308002 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-256 551 chr3L 2331585 2331615 chr3L 2331662 2331692 4 76 3.5 2.5 3.0 1.0 107 chr3L 2331585 intron MsR1 + chr3L 2331638 intron MsR1 + chr3L 2331692 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-256 552 chr3L 2447510 2447537 chr3L 2456666 2456692 roo 7 9154 1.5 6.0 3.8 1.5 9182 chr3L 2447510 intron CG45186 + chr3L 2452101 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-256 553 chr3L 2506374 2506394 chr3L 2506581 2506595 7 205 0.0 1.0 0.5 4.7 221 chr3L 2506374 3` UTR Spn - chr3L 2506484 3` UTR Spn - chr3L 2506595 3` UTR Spn - chr3L_7_2505001 chr3L_2505001 RAL-256 554 chr3L 2533657 2533674 chr3L 2533732 2533755 4 76 4.5 4.5 4.5 0.7 98 chr3L 2533657 intron Spn - chr3L 2533706 intron Spn - chr3L 2533755 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-256 555 chr3L 2534619 2534638 chr3L 2534702 2534721 8 82 0.0 6.5 3.2 1.9 102 chr3L 2534619 intron Spn - chr3L 2534670 intron Spn - chr3L 2534721 exon Spn - chr3L_8_2530001 chr3L_2530001 RAL-256 556 chr3L 2561531 2561551 chr3L 2561607 2561628 5 77 2.5 0.5 1.5 2.0 97 chr3L 2561531 intron msn - chr3L 2561580 intron msn - chr3L 2561628 intron msn - chr3L_5_2560001 chr3L_2560001 RAL-256 557 chr3L 2731515 2731552 chr3L 2731596 2731633 13 81 1.5 2.0 1.8 4.6 118 chr3L 2731515 intron Mrtf - chr3L 2731574 intron Mrtf - chr3L 2731633 intron Mrtf - chr3L_13_2730001 chr3L_2730001 RAL-256 558 chr3L 2854606 2854635 chr3L 2854683 2854694 4 72 1.0 0.0 0.5 2.7 88 chr3L 2854606 intron CG43444 - chr3L 2854650 intron CG43444 - chr3L 2854694 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-256 559 chr3L 2899576 2899602 chr3L 2899688 2899715 10 113 2.5 1.0 1.8 3.6 139 chr3L 2899576 intron Shab + chr3L 2899646 intron Shab + chr3L 2899715 intron Shab + chr3L_10_2895001 chr3L_2895001 RAL-256 560 chr3L 3281454 3281475 chr3L 3281933 3281970 Doc 14 491 3.5 7.0 5.2 2.3 516 chr3L 3281454 intron CG12017 + chr3L 3281712 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_14_3280001 chr3L_3280001 RAL-256 561 chr3L 3341283 3341298 chr3L 3341363 3341378 5 80 0.0 3.5 1.8 1.8 95 chr3L 3341283 intron kst + chr3L 3341330 intron kst + chr3L 3341378 intron kst + chr3L_5_3340001 chr3L_3340001 RAL-256 562 chr3L 3436290 3436305 chr3L 3436369 3436384 5 79 0.5 2.0 1.2 2.3 94 chr3L 3436290 intron eIF5B - chr3L 3436337 intron eIF5B - chr3L 3436384 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-256 563 chr3L 3475079 3475111 chr3L 3475522 3475555 jockey 9 444 3.0 5.5 4.2 1.7 476 chr3L 3475079 intron CG42324 + chr3L 3475317 intron CG42324 + chr3L 3475555 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-256 564 chr3L 3503982 3503984 chr3L 3504081 3504091 4 105 0.0 1.5 0.8 2.2 109 chr3L 3503982 intron CG42324 + chr3L 3504036 intron CG42324 + chr3L 3504091 intron CG42324 + chr3L_4_3500001 chr3L_3500001 RAL-256 565 chr3L 3516287 3516321 chr3L 3516368 3516399 5 78 1.0 1.0 1.0 2.5 112 chr3L 3516287 intron Eip63E + chr3L 3516343 intron Eip63E + chr3L 3516399 intron Eip63E + chr3L_5_3515001 chr3L_3515001 RAL-256 566 chr3L 3601299 3601330 chr3L 3606610 3606641 copia 6 5310 4.0 1.0 2.5 1.7 5342 chr3L 3601299 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606641 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-256 567 chr3L 3921392 3921424 chr3L 3921656 3921681 13 262 2.0 4.5 3.2 3.1 289 chr3L 3921392 intron Eip63F-1 - chr3L 3921536 intron Eip63F-1 - chr3L 3921681 intron Eip63F-1 - chr3L_13_3920001 chr3L_3920001 RAL-256 568 chr3L 3939878 3939915 chr3L 3940390 3940426 9 509 3.0 2.0 2.5 2.6 548 chr3L 3939878 exon CG12766 - chr3L 3940152 intergenic CG12766 -,CR43916 + chr3L 3940426 intergenic CR43916 +,CG12766 - chr3L_9_3940001 chr3L_3940001 RAL-256 569 chr3L 3946192 3946218 chr3L 3946269 3946295 6 77 3.5 0.0 1.8 2.1 103 chr3L 3946192 3` UTR CG14982 + chr3L 3946244 3` UTR CG14982 + chr3L 3946295 3` UTR CG14982 + chr3L_6_3945001 chr3L_3945001 RAL-256 570 chr3L 4015733 4015765 chr3L 4015816 4015848 6 83 2.0 0.0 1.0 3.0 115 chr3L 4015733 intergenic not near genes chr3L 4015790 intergenic not near genes chr3L 4015848 intergenic not near genes chr3L_6_4015001 chr3L_4015001 RAL-256 571 chr3L 4058845 4058873 chr3L 4058925 4058953 4 80 1.0 1.0 1.0 2.0 108 chr3L 4058845 3` UTR CG1136 + chr3L 4058899 3` UTR CG1136 + chr3L 4058953 3` UTR CG1136 + chr3L_4_4055001 chr3L_4055001 RAL-256 572 chr3L 4098384 4098417 chr3L 4098588 4098593 7 199 0.0 1.0 0.5 4.7 209 chr3L 4098384 intron CG14995 - chr3L 4098488 intron CG14995 - chr3L 4098593 intron CG14995 - chr3L_7_4095001 chr3L_4095001 RAL-256 573 chr3L 4168211 4168230 chr3L 4168290 4168298 6 77 0.0 4.5 2.2 1.9 87 chr3L 4168211 intergenic CR44529 - chr3L 4168254 3` UTR CR44529 - chr3L 4168298 3` UTR CR44529 - chr3L_6_4165001 chr3L_4165001 RAL-256 574 chr3L 4195145 4195172 chr3L 4195249 4195274 9 103 5.0 5.0 5.0 1.5 129 chr3L 4195145 exon CG43367 + chr3L 4195210 intron CG43367 + chr3L 4195274 intron CG43367 + chr3L_9_4195001 chr3L_4195001 RAL-256 575 chr3L 4385642 4385673 chr3L 4385735 4385765 8 92 1.5 2.5 2.0 2.7 123 chr3L 4385642 intron slow + chr3L 4385704 intron slow + chr3L 4385765 intron slow + chr3L_8_4385001 chr3L_4385001 RAL-256 576 chr3L 4519426 4519451 chr3L 4519501 4519522 5 75 1.5 3.5 2.5 1.4 96 chr3L 4519426 intron Tie - chr3L 4519474 intron Tie - chr3L 4519522 intron Tie - chr3L_5_4515001 chr3L_4515001 RAL-256 577 chr3L 4682962 4682996 chr3L 4683067 4683101 11 102 6.5 3.0 4.8 1.9 139 chr3L 4682962 intron axo - chr3L 4683032 intron axo - chr3L 4683101 intron axo - chr3L_11_4680001 chr3L_4680001 RAL-256 578 chr3L 4858305 4858335 chr3L 4858394 4858424 18 84 2.0 2.0 2.0 6.0 119 chr3L 4858305 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858424 intergenic not near genes chr3L_18_4855001 chr3L_4855001 RAL-256 579 chr3L 4896185 4896211 chr3L 4896267 4896293 8 80 2.0 2.5 2.2 2.5 108 chr3L 4896185 intergenic CG17150 + chr3L 4896239 intergenic CG17150 + chr3L 4896293 intergenic not near genes chr3L_8_4895001 chr3L_4895001 RAL-256 580 chr3L 4901136 4901152 chr3L 4907325 4907342 diver 4 6190 1.0 0.5 0.8 2.2 6206 chr3L 4901136 intergenic CG13704 + chr3L 4904239 intergenic not near genes chr3L 4907342 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-256 581 chr3L 4991406 4991425 chr3L 4991520 4991547 5 119 1.5 1.0 1.2 2.3 141 chr3L 4991406 intron Con - chr3L 4991476 intron Con - chr3L 4991547 intron Con - chr3L_5_4990001 chr3L_4990001 RAL-256 582 chr3L 5034156 5034167 chr3L 5043308 5043319 roo 6 9151 3.5 0.0 1.8 2.1 9163 chr3L 5034156 intron Con - chr3L 5038738 intron Con - chr3L 5043319 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-256 583 chr3L 5045468 5045486 chr3L 5050249 5050266 Doc 5 4781 1.5 0.5 1.0 2.5 4798 chr3L 5045468 intron Con - chr3L 5047867 intron Con - chr3L 5050266 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-256 584 chr3L 5104484 5104501 chr3L 5124618 5124635 5 20134 1.0 0.0 0.5 3.3 20151 chr3L 5104484 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124635 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-256 585 chr3L 5265349 5265378 chr3L 5265454 5265485 21 105 4.0 4.0 4.0 4.2 136 chr3L 5265349 intron shep - chr3L 5265417 intron shep - chr3L 5265485 intron shep - chr3L_21_5265001 chr3L_5265001 RAL-256 586 chr3L 5318228 5318246 chr3L 5318312 5318330 5 84 1.0 3.0 2.0 1.7 102 chr3L 5318228 intergenic not near genes chr3L 5318279 intergenic not near genes chr3L 5318330 intergenic not near genes chr3L_5_5315001 chr3L_5315001 RAL-256 587 chr3L 5387666 5387698 chr3L 5387923 5387934 6 252 0.5 2.5 1.5 2.4 268 chr3L 5387666 intergenic not near genes chr3L 5387800 intergenic not near genes chr3L 5387934 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-256 588 chr3L 5409281 5409305 chr3L 5409370 5409396 6 91 1.5 1.0 1.2 2.7 115 chr3L 5409281 intergenic not near genes chr3L 5409338 intergenic not near genes chr3L 5409396 intergenic not near genes chr3L_6_5405001 chr3L_5405001 RAL-256 589 chr3L 5482941 5483095 chr3L 5483150 5483187 7 136 2.0 1.5 1.8 2.5 246 chr3L 5482941 exon CG4835 + chr3L 5483064 exon CG4835 + chr3L 5483187 exon CG4835 + chr3L_7_5480001 chr3L_5480001 RAL-256 590 chr3L 5496516 5496533 chr3L 5496593 5496610 4 76 0.0 2.5 1.2 1.8 94 chr3L 5496516 intergenic not near genes chr3L 5496563 intergenic not near genes chr3L 5496610 intergenic not near genes chr3L_4_5495001 chr3L_5495001 RAL-256 591 chr3L 5498414 5498430 chr3L 5498491 5498507 4 77 0.0 3.0 1.5 1.6 93 chr3L 5498414 exon blanks - chr3L 5498460 exon blanks - chr3L 5498507 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-256 592 chr3L 5581471 5581494 chr3L 5581550 5581580 12 84 1.0 2.5 1.8 4.3 109 chr3L 5581471 intergenic not near genes chr3L 5581526 intergenic not near genes chr3L 5581580 intergenic not near genes chr3L_12_5580001 chr3L_5580001 RAL-256 593 chr3L 5667628 5667642 chr3L 5667708 5667721 5 79 2.0 0.0 1.0 2.5 93 chr3L 5667628 intron sif + chr3L 5667674 intron sif + chr3L 5667721 intron sif + chr3L_5_5665001 chr3L_5665001 RAL-256 594 chr3L 5729743 5729771 chr3L 5729828 5729855 6 85 1.0 0.0 0.5 4.0 112 chr3L 5729743 intron sif + chr3L 5729799 intron sif + chr3L 5729855 intron sif + chr3L_6_5725001 chr3L_5725001 RAL-256 595 chr3L 5788705 5788731 chr3L 5788786 5788810 5 80 2.5 1.0 1.8 1.8 105 chr3L 5788705 intergenic not near genes chr3L 5788758 intergenic not near genes chr3L 5788810 intergenic not near genes chr3L_5_5785001 chr3L_5785001 RAL-256 596 chr3L 5910398 5910407 chr3L 5910822 5910843 4 433 2.5 0.5 1.5 1.6 445 chr3L 5910398 intron CG13288 + chr3L 5910620 intron CG13288 + chr3L 5910843 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-256 597 chr3L 5926337 5926349 chr3L 5926507 5926525 BS 4 174 3.0 5.0 4.0 0.8 188 chr3L 5926337 intron Vap-33B + chr3L 5926431 intron Vap-33B + chr3L 5926525 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-256 598 chr3L 6052656 6052678 chr3L 6052738 6052740 7 80 8.5 14.5 11.5 0.6 84 chr3L 6052656 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052740 exon Jon65Aii + chr3L_7_6050001 chr3L_6050001 RAL-256 599 chr3L 6185601 6185626 chr3L 6185678 6185704 4 78 0.5 0.5 0.5 2.7 103 chr3L 6185601 exon CG43293 + chr3L 6185652 intron CG43293 + chr3L 6185704 exon CG43293 + chr3L_4_6185001 chr3L_6185001 RAL-256 600 chr3L 6220913 6220948 chr3L 6230064 6230097 roo 10 9152 1.5 2.0 1.8 3.6 9184 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_10_6225001 chr3L_6225001 RAL-256 601 chr3L 6293764 6293789 chr3L 6293846 6293871 4 82 2.5 2.0 2.2 1.2 107 chr3L 6293764 intergenic not near genes chr3L 6293818 intergenic not near genes chr3L 6293871 intergenic not near genes chr3L_4_6290001 chr3L_6290001 RAL-256 602 chr3L 6651291 6651314 chr3L 6651378 6651400 6 86 3.0 1.0 2.0 2.0 109 chr3L 6651291 intergenic not near genes chr3L 6651346 intergenic not near genes chr3L 6651400 intergenic not near genes chr3L_6_6650001 chr3L_6650001 RAL-256 603 chr3L 6855937 6855955 chr3L 6860721 6860737 Doc 5 4783 0.5 3.5 2.0 1.7 4800 chr3L 6855937 intergenic not near genes chr3L 6858337 intergenic not near genes chr3L 6860737 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-256 604 chr3L 6880492 6880526 chr3L 6880643 6880678 10 149 3.0 1.0 2.0 3.3 186 chr3L 6880492 intergenic not near genes chr3L 6880585 intergenic not near genes chr3L 6880678 intergenic not near genes chr3L_10_6880001 chr3L_6880001 RAL-256 605 chr3L 6974513 6974520 chr3L 6974612 6974621 4 100 0.0 5.0 2.5 1.1 108 chr3L 6974513 intron Galphai - chr3L 6974567 intron Galphai - chr3L 6974621 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-256 606 chr3L 7033173 7033180 chr3L 7033251 7033260 4 78 7.5 5.0 6.2 0.6 87 chr3L 7033173 intron Mp + chr3L 7033216 intron Mp + chr3L 7033260 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-256 607 chr3L 7033181 7033198 chr3L 7033250 7033278 7 78 4.5 5.0 4.8 1.2 97 chr3L 7033181 intron Mp + chr3L 7033230 intron Mp + chr3L 7033278 intron Mp + chr3L_7_7030001 chr3L_7030001 RAL-256 608 chr3L 7222969 7223003 chr3L 7223053 7223089 9 84 4.0 0.0 2.0 3.0 120 chr3L 7222969 5` UTR CR45410 + chr3L 7223029 5` UTR CR45410 + chr3L 7223089 5` UTR CR45410 + chr3L_9_7220001 chr3L_7220001 RAL-256 609 chr3L 7277110 7277129 chr3L 7277212 7277231 4 102 6.0 1.0 3.5 0.9 121 chr3L 7277110 exon unc-13-4A - chr3L 7277170 intron unc-13-4A - chr3L 7277231 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 RAL-256 610 chr3L 7377316 7377345 chr3L 7380421 7380450 297 6 3104 1.0 3.0 2.0 2.0 3134 chr3L 7377316 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380450 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-256 611 chr3L 7572279 7572309 chr3L 7572366 7572385 11 85 2.0 0.0 1.0 5.5 106 chr3L 7572279 intergenic not near genes chr3L 7572332 intergenic not near genes chr3L 7572385 intergenic not near genes chr3L_11_7570001 chr3L_7570001 RAL-256 612 chr3L 7576213 7576235 chr3L 7576301 7576322 4 87 4.5 2.0 3.2 1.0 109 chr3L 7576213 intergenic not near genes chr3L 7576268 intergenic not near genes chr3L 7576322 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-256 613 chr3L 7581625 7581656 chr3L 7581708 7581729 10 82 0.0 2.5 1.2 4.5 104 chr3L 7581625 intergenic not near genes chr3L 7581677 intergenic not near genes chr3L 7581729 intergenic not near genes chr3L_10_7580001 chr3L_7580001 RAL-256 614 chr3L 7801744 7801773 chr3L 7801983 7802011 8 237 2.5 2.0 2.2 2.5 267 chr3L 7801744 intron CG32369 - chr3L 7801878 intron CG32369 - chr3L 7802011 intron CG32369 - chr3L_8_7800001 chr3L_7800001 RAL-256 615 chr3L 7869665 7869673 chr3L 7869744 7869753 5 80 5.0 3.5 4.2 1.0 88 chr3L 7869665 exon CG32365 + chr3L 7869709 exon CG32365 + chr3L 7869753 exon CG32365 + chr3L_5_7865001 chr3L_7865001 RAL-256 616 chr3L 7985362 7985391 chr3L 7987690 7987719 NOF 5 2327 4.0 2.0 3.0 1.2 2357 chr3L 7985362 intron nmo + chr3L 7986540 intron nmo + chr3L 7987719 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-256 617 chr3L 8027974 8027996 chr3L 8028050 8028071 4 74 2.0 1.5 1.8 1.4 97 chr3L 8027974 intron nmo + chr3L 8028022 intron nmo + chr3L 8028071 intron nmo + chr3L_4_8025001 chr3L_8025001 RAL-256 618 chr3L 8219554 8219591 chr3L 8219845 8219881 7 291 0.5 3.0 1.8 2.5 327 chr3L 8219554 intergenic not near genes chr3L 8219718 intergenic not near genes chr3L 8219881 intergenic not near genes chr3L_7_8215001 chr3L_8215001 RAL-256 619 chr3L 8481800 8481806 chr3L 8490930 8490961 roo 8 9146 2.5 2.0 2.2 2.5 9161 chr3L 8481800 intron CG43163 - chr3L 8486380 intron CG43163 - chr3L 8490961 intron CG43163 - chr3L_8_8485001 chr3L_8485001 RAL-256 620 chr3L 8707677 8707700 chr3L 8707920 8707943 6 243 1.0 1.0 1.0 3.0 266 chr3L 8707677 intergenic not near genes chr3L 8707810 intergenic not near genes chr3L 8707943 intergenic not near genes chr3L_6_8705001 chr3L_8705001 RAL-256 621 chr3L 8777002 8777036 chr3L 8777102 8777137 8 101 3.5 3.5 3.5 1.8 135 chr3L 8777002 intron Fhos + chr3L 8777070 intron Fhos + chr3L 8777137 intron Fhos + chr3L_8_8775001 chr3L_8775001 RAL-256 622 chr3L 9003954 9003974 chr3L 9004033 9004059 7 84 2.0 3.0 2.5 2.0 105 chr3L 9003954 intergenic not near genes chr3L 9004006 intergenic not near genes chr3L 9004059 intergenic not near genes chr3L_7_9000001 chr3L_9000001 RAL-256 623 chr3L 9076926 9076959 chr3L 9084486 9084519 412 6 7560 2.5 2.0 2.2 1.9 7593 chr3L 9076926 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084519 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-256 624 chr3L 9130564 9130580 chr3L 9134323 9134341 412 7 3760 3.5 5.5 4.5 1.3 3777 chr3L 9130564 intergenic bol - chr3L 9132452 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-256 625 chr3L 9219244 9219274 chr3L 9219915 9219946 jockey 10 667 7.0 5.0 6.0 1.4 702 chr3L 9219244 intergenic not near genes chr3L 9219595 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-256 626 chr3L 9575905 9575942 chr3L 9580983 9581015 jockey 10 5077 3.0 1.5 2.2 3.1 5110 chr3L 9575905 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-256 627 chr3L 9637853 9637873 chr3L 9637934 9637955 4 82 3.0 1.5 2.2 1.2 102 chr3L 9637853 intron fry - chr3L 9637904 intron fry - chr3L 9637955 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-256 628 chr3L 9689508 9689533 chr3L 9689588 9689613 10 77 5.5 3.5 4.5 1.8 105 chr3L 9689508 intron CG6767 - chr3L 9689560 intron CG6767 - chr3L 9689613 intron CG6767 - chr3L_10_9685001 chr3L_9685001 RAL-256 629 chr3L 9829070 9829081 chr3L 9829152 9829163 5 81 2.0 4.0 3.0 1.2 93 chr3L 9829070 intron CG43897 + chr3L 9829116 intron CG43897 + chr3L 9829163 intron CG43897 + chr3L_5_9825001 chr3L_9825001 RAL-256 630 chr3L 9898677 9898684 chr3L 9898766 9898773 4 89 0.0 3.5 1.8 1.4 96 chr3L 9898677 intergenic nudE +,CG6707 - chr3L 9898725 5` UTR nudE + chr3L 9898773 5` UTR nudE + chr3L_4_9895001 chr3L_9895001 RAL-256 631 chr3L 9918882 9918911 chr3L 9918976 9919006 10 94 2.5 2.0 2.2 3.1 124 chr3L 9918882 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-256 632 chr3L 9929680 9929695 chr3L 9938461 9938476 roo 4 8780 2.5 3.5 3.0 1.0 8796 chr3L 9929680 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938476 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-256 633 chr3L 10096233 10096260 chr3L 10096333 10096360 16 100 2.5 4.0 3.2 3.8 127 chr3L 10096233 intron,exon dpr6 +,CG42825 - chr3L 10096296 intron,exon dpr6 +,CG42825 - chr3L 10096360 intron,exon dpr6 +,CG42825 - chr3L_16_10095001 chr3L_10095001 RAL-256 634 chr3L 10099094 10099103 chr3L 10099179 10099188 4 85 2.5 1.5 2.0 1.3 94 chr3L 10099094 intron dpr6 + chr3L 10099141 intron dpr6 + chr3L 10099188 intron dpr6 + chr3L_4_10095001 chr3L_10095001 RAL-256 635 chr3L 10107610 10107632 chr3L 10107956 10107975 9 347 2.0 1.5 1.8 3.2 365 chr3L 10107610 intron dpr6 + chr3L 10107792 intron dpr6 + chr3L 10107975 intron dpr6 + chr3L_9_10105001 chr3L_10105001 RAL-256 636 chr3L 10219777 10219806 chr3L 10220289 10220312 5 510 2.0 0.5 1.2 2.3 535 chr3L 10219777 exon CG32055 - chr3L 10220044 exon CG32055 - chr3L 10220312 intergenic CG32055 -,scramb1 - chr3L_5_10220001 chr3L_10220001 RAL-256 637 chr3L 10222745 10222774 chr3L 10222825 10222854 4 80 0.0 3.0 1.5 1.6 109 chr3L 10222745 intron scramb1 - chr3L 10222800 intron scramb1 - chr3L 10222854 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-256 638 chr3L 10272505 10272533 chr3L 10272612 10272640 4 106 1.5 2.5 2.0 1.3 135 chr3L 10272505 intergenic not near genes chr3L 10272572 intergenic not near genes chr3L 10272640 intergenic not near genes chr3L_4_10270001 chr3L_10270001 RAL-256 639 chr3L 10308739 10308771 chr3L 10308816 10308822 12 74 4.5 3.5 4.0 2.4 83 chr3L 10308739 intergenic not near genes chr3L 10308780 intergenic not near genes chr3L 10308822 intergenic not near genes chr3L_12_10305001 chr3L_10305001 RAL-256 640 chr3L 10325898 10325924 chr3L 10329302 10329325 5 3402 9.0 17.0 13.0 0.4 3427 chr3L 10325898 intergenic not near genes chr3L 10327612 intergenic CR45244 + chr3L 10329325 intergenic not near genes chr3L_5_10325001 chr3L_10325001 RAL-256 641 chr3L 10414958 10414972 chr3L 10417328 10417344 Doc 6 2371 0.0 3.5 1.8 2.1 2386 chr3L 10414958 intergenic CG12362 + chr3L 10416151 intergenic not near genes chr3L 10417344 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-256 642 chr3L 10430080 10430097 chr3L 10430157 10430171 6 76 2.0 0.0 1.0 3.0 91 chr3L 10430080 3` UTR Ir67b - chr3L 10430126 3` UTR Ir67b - chr3L 10430171 3` UTR Ir67b - chr3L_6_10430001 chr3L_10430001 RAL-256 643 chr3L 10526638 10526653 chr3L 10526718 10526734 5 80 0.5 3.5 2.0 1.7 96 chr3L 10526638 intron A2bp1 + chr3L 10526686 intron A2bp1 + chr3L 10526734 intron A2bp1 + chr3L_5_10525001 chr3L_10525001 RAL-256 644 chr3L 10658099 10658206 chr3L 10658176 10658333 6 102 0.5 0.5 0.5 4.0 234 chr3L 10658099 intron CG32066 - chr3L 10658216 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_6_10655001 chr3L_10655001 RAL-256 645 chr3L 10762833 10762851 chr3L 10762917 10762933 8 82 4.5 1.5 3.0 2.0 100 chr3L 10762833 intergenic not near genes chr3L 10762883 intergenic not near genes chr3L 10762933 intergenic not near genes chr3L_8_10760001 chr3L_10760001 RAL-256 646 chr3L 11245094 11245102 chr3L 11245186 11245194 4 92 3.5 3.0 3.2 1.0 100 chr3L 11245094 intergenic not near genes chr3L 11245144 intergenic not near genes chr3L 11245194 intergenic not near genes chr3L_4_11245001 chr3L_11245001 RAL-256 647 chr3L 11245104 11245113 chr3L 11245179 11245202 6 82 3.0 2.0 2.5 1.7 98 chr3L 11245104 intergenic not near genes chr3L 11245153 intergenic not near genes chr3L 11245202 intergenic not near genes chr3L_6_11245001 chr3L_11245001 RAL-256 648 chr3L 11264470 11264499 chr3L 11271422 11271450 17.6 4 6947 2.5 1.5 2.0 1.3 6980 chr3L 11264470 intergenic not near genes chr3L 11267960 intergenic not near genes chr3L 11271450 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-256 649 chr3L 11334895 11334923 chr3L 11334971 11334994 4 75 1.0 0.0 0.5 2.7 99 chr3L 11334895 intergenic not near genes chr3L 11334944 intergenic not near genes chr3L 11334994 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-256 650 chr3L 11383990 11383997 chr3L 11384041 11384076 4 64 1.0 3.0 2.0 1.3 86 chr3L 11383990 3` UTR CR42755 - chr3L 11384033 3` UTR CR42755 - chr3L 11384076 3` UTR CR42755 - chr3L_4_11380001 chr3L_11380001 RAL-256 651 chr3L 11397625 11397637 chr3L 11397709 11397721 4 83 3.0 3.0 3.0 1.0 96 chr3L 11397625 exon CG44362 + chr3L 11397673 exon CG44362 + chr3L 11397721 exon CG44362 + chr3L_4_11395001 chr3L_11395001 RAL-256 652 chr3L 11564791 11564807 chr3L 11572415 11572432 412 4 7623 4.5 5.0 4.8 0.7 7641 chr3L 11564791 exon CG33267 + chr3L 11568612 intron CG33267 + chr3L 11572432 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-256 653 chr3L 11579559 11579572 chr3L 11579665 11579678 4 106 2.5 1.5 2.0 1.3 119 chr3L 11579559 intergenic CG43390 - chr3L 11579618 intergenic CG43390 - chr3L 11579678 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-256 654 chr3L 11744012 11744038 chr3L 11744120 11744146 10 108 2.0 0.0 1.0 5.0 134 chr3L 11744012 exon CG6024 - chr3L 11744079 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_10_11740001 chr3L_11740001 RAL-256 655 chr3L 11750608 11750624 chr3L 11750754 11750770 7 145 0.0 5.5 2.8 1.8 162 chr3L 11750608 intron CG6024 - chr3L 11750689 intron CG6024 - chr3L 11750770 intron CG6024 - chr3L_7_11750001 chr3L_11750001 RAL-256 656 chr3L 802565 802566 chr3L 11777678 11777678 9 10975112 21.5 8.5 15.0 0.6 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_6290001 chr3L_6290001 RAL-256 657 chr3L 11864562 11864582 chr3L 11865857 11865877 pogo 6 1295 2.0 1.0 1.5 2.4 1315 chr3L 11864562 intron CG44837 - chr3L 11865220 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-256 658 chr3L 11906431 11906448 chr3L 11906500 11906524 7 72 5.5 0.0 2.8 1.8 93 chr3L 11906431 intron CG44837 - chr3L 11906478 intron CG44837 - chr3L 11906524 intron CG44837 - chr3L_7_11905001 chr3L_11905001 RAL-256 659 chr3L 12052706 12052730 chr3L 12052795 12052819 4 89 2.0 3.5 2.8 1.1 113 chr3L 12052706 intron rols - chr3L 12052762 intron rols - chr3L 12052819 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-256 660 chr3L 12075425 12075446 chr3L 12075514 12075535 4 89 3.0 0.0 1.5 1.6 110 chr3L 12075425 intron Sema-5c - chr3L 12075480 intron Sema-5c - chr3L 12075535 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-256 661 chr3L 12105975 12105997 chr3L 12106055 12106081 15 86 4.5 1.0 2.8 3.9 106 chr3L 12105975 intergenic not near genes chr3L 12106028 intergenic not near genes chr3L 12106081 intergenic not near genes chr3L_15_12105001 chr3L_12105001 RAL-256 662 chr3L 12156431 12156454 chr3L 12160316 12160340 8 3887 5.5 21.5 13.5 0.6 3909 chr3L 12156431 3` UTR Nrx-IV + chr3L 12158386 intron CG9760 - chr3L 12160340 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-256 663 chr3L 12335391 12335407 chr3L 12335466 12335485 4 78 9.5 2.5 6.0 0.6 94 chr3L 12335391 exon CG32105 + chr3L 12335438 3` UTR CG32105 + chr3L 12335485 3` UTR CG32105 + chr3L_4_12335001 chr3L_12335001 RAL-256 664 chr3L 12369540 12369566 chr3L 12369630 12369656 4 90 0.0 1.0 0.5 2.7 116 chr3L 12369540 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369656 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-256 665 chr3L 12591636 12591639 chr3L 12591709 12591716 4 76 6.0 6.5 6.2 0.6 80 chr3L 12591636 intron ara + chr3L 12591676 intron ara + chr3L 12591716 intron ara + chr3L_4_12590001 chr3L_12590001 RAL-256 666 chr3L 12874930 12874954 chr3L 12877222 12877246 jockey 4 2292 3.0 0.0 1.5 1.6 2316 chr3L 12874930 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877246 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-256 667 chr3L 12883371 12883392 chr3L 12883450 12883477 9 85 1.0 2.0 1.5 3.6 106 chr3L 12883371 intergenic not near genes chr3L 12883424 intergenic not near genes chr3L 12883477 intergenic not near genes chr3L_9_12880001 chr3L_12880001 RAL-256 668 chr3L 12894801 12894820 chr3L 12894879 12894898 6 77 5.5 4.5 5.0 1.0 97 chr3L 12894801 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894898 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-256 669 chr3L 12896247 12896259 chr3L 12896312 12896316 4 68 4.5 1.5 3.0 1.0 69 chr3L 12896247 intergenic not near genes chr3L 12896282 intergenic not near genes chr3L 12896316 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-256 670 chr3L 12919274 12919302 chr3L 12924747 12924775 Rt1c 5 5473 4.0 2.5 3.2 1.2 5501 chr3L 12919274 intergenic not near genes chr3L 12922024 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_5_12920001 chr3L_12920001 RAL-256 671 chr3L 12957785 12957817 chr3L 12962267 12962298 copia 9 4481 1.0 1.0 1.0 4.5 4513 chr3L 12957785 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-256 672 chr3L 12978760 12978779 chr3L 12978837 12978856 8 78 1.5 0.0 0.8 4.4 96 chr3L 12978760 intergenic not near genes chr3L 12978808 intergenic not near genes chr3L 12978856 intergenic not near genes chr3L_8_12975001 chr3L_12975001 RAL-256 673 chr3L 12980523 12980552 chr3L 12980611 12980639 6 86 0.5 0.0 0.2 5.0 116 chr3L 12980523 intergenic not near genes chr3L 12980581 intergenic not near genes chr3L 12980639 intergenic not near genes chr3L_6_12980001 chr3L_12980001 RAL-256 674 chr3L 13261822 13261840 chr3L 13261912 13261930 6 90 2.5 2.0 2.2 1.9 108 chr3L 13261822 intron caps + chr3L 13261876 intron caps + chr3L 13261930 intron caps + chr3L_6_13260001 chr3L_13260001 RAL-256 675 chr3L 13335538 13335566 chr3L 13335638 13335665 8 99 1.5 4.0 2.8 2.1 127 chr3L 13335538 intergenic not near genes chr3L 13335602 intergenic not near genes chr3L 13335665 intergenic not near genes chr3L_8_13335001 chr3L_13335001 RAL-256 676 chr3L 13338294 13338315 chr3L 13338381 13338411 6 93 0.5 2.0 1.2 2.7 117 chr3L 13338294 intergenic not near genes chr3L 13338352 intergenic not near genes chr3L 13338411 intergenic not near genes chr3L_6_13335001 chr3L_13335001 RAL-256 677 chr3L 13525156 13525187 chr3L 13532951 13532983 roo 5 7793 2.5 2.0 2.2 1.6 7827 chr3L 13525156 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-256 678 chr3L 13559961 13559995 chr3L 13560046 13560081 13 86 1.5 1.0 1.2 5.9 120 chr3L 13559961 intron bru-3 - chr3L 13560021 intron bru-3 - chr3L 13560081 intron bru-3 - chr3L_13_13560001 chr3L_13560001 RAL-256 679 chr3L 13626689 13626718 chr3L 13626773 13626802 6 84 0.0 2.0 1.0 3.0 113 chr3L 13626689 intron bru-3 - chr3L 13626746 intron bru-3 - chr3L 13626802 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-256 680 chr3L 13633414 13633445 chr3L 13633768 13633798 14 353 0.5 2.0 1.2 6.4 384 chr3L 13633414 intron bru-3 - chr3L 13633606 intron bru-3 - chr3L 13633798 intron bru-3 - chr3L_14_13630001 chr3L_13630001 RAL-256 681 chr3L 13692587 13692609 chr3L 13692662 13692681 4 75 1.5 1.0 1.2 1.8 94 chr3L 13692587 intron bru-3 - chr3L 13692634 intron bru-3 - chr3L 13692681 intron bru-3 - chr3L_4_13690001 chr3L_13690001 RAL-256 682 chr3L 13888742 13888760 chr3L 13888890 13888907 6 147 0.5 2.0 1.2 2.7 165 chr3L 13888742 intron dysc - chr3L 13888824 intron dysc - chr3L 13888907 intron dysc - chr3L_6_13885001 chr3L_13885001 RAL-256 683 chr3L 13901572 13901596 chr3L 13901649 13901672 7 77 1.5 2.5 2.0 2.3 100 chr3L 13901572 intron dysc - chr3L 13901622 intron dysc - chr3L 13901672 intron dysc - chr3L_7_13900001 chr3L_13900001 RAL-256 684 chr3L 13957893 13957904 chr3L 13958086 13958096 6 192 2.0 7.0 4.5 1.1 203 chr3L 13957893 intron CG32137 + chr3L 13957994 intron CG32137 + chr3L 13958096 intron CG32137 + chr3L_6_13955001 chr3L_13955001 RAL-256 685 chr3L 14282600 14282606 chr3L 14282680 14282686 4 80 0.0 10.0 5.0 0.7 86 chr3L 14282600 intron fz + chr3L 14282643 intron fz + chr3L 14282686 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-256 686 chr3L 14296005 14296011 chr3L 14296474 14296497 roo 4 481 3.0 3.5 3.2 1.0 492 chr3L 14296005 intron fz + chr3L 14296251 intron fz + chr3L 14296497 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-256 687 chr3L 14312023 14312052 chr3L 14316837 14316851 X-element 7 4810 2.5 3.0 2.8 1.8 4828 chr3L 14312023 exon fz + chr3L 14314437 intron fz + chr3L 14316851 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-256 688 chr3L 14429436 14429466 chr3L 14429512 14429542 5 76 1.0 2.0 1.5 2.0 106 chr3L 14429436 intron bbg - chr3L 14429489 intron bbg - chr3L 14429542 intron bbg - chr3L_5_14425001 chr3L_14425001 RAL-256 689 chr3L 14454768 14454803 chr3L 14455040 14455070 12 270 1.5 1.0 1.2 5.5 302 chr3L 14454768 intron bbg - chr3L 14454919 intron bbg - chr3L 14455070 intron bbg - chr3L_12_14450001 chr3L_14450001 RAL-256 690 chr3L 14502435 14502470 chr3L 14502591 14502625 7 156 1.5 2.5 2.0 2.3 190 chr3L 14502435 intron bbg - chr3L 14502530 intron bbg - chr3L 14502625 intron bbg - chr3L_7_14500001 chr3L_14500001 RAL-256 691 chr3L 14565744 14565773 chr3L 14565834 14565864 5 91 1.0 0.5 0.8 2.8 120 chr3L 14565744 intergenic not near genes chr3L 14565804 intergenic not near genes chr3L 14565864 intergenic not near genes chr3L_5_14565001 chr3L_14565001 RAL-256 692 chr3L 14584165 14584184 chr3L 14584251 14584271 6 86 0.5 2.0 1.2 2.7 106 chr3L 14584165 intron HGTX - chr3L 14584218 intron HGTX - chr3L 14584271 intron HGTX - chr3L_6_14580001 chr3L_14580001 RAL-256 693 chr3L 14721182 14721210 chr3L 14723025 14723045 Rt1c 9 1840 3.5 6.5 5.0 1.5 1863 chr3L 14721182 intron ome + chr3L 14722114 intron ome + chr3L 14723045 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-256 694 chr3L 14840375 14840389 chr3L 14840480 14840494 4 105 1.5 2.5 2.0 1.3 119 chr3L 14840375 intron CG17839 + chr3L 14840434 intron CG17839 + chr3L 14840494 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-256 695 chr3L 14867672 14867702 chr3L 14867752 14867782 4 80 1.5 1.0 1.2 1.8 110 chr3L 14867672 intron CG17839 + chr3L 14867727 intron CG17839 + chr3L 14867782 intron CG17839 + chr3L_4_14865001 chr3L_14865001 RAL-256 696 chr3L 15035542 15035578 chr3L 15036470 15036508 6 930 2.5 2.5 2.5 1.7 966 chr3L 15035542 intron Sytbeta - chr3L 15036025 intron Sytbeta - chr3L 15036508 intron Sytbeta - chr3L_6_15035001 chr3L_15035001 RAL-256 697 chr3L 15036651 15036668 chr3L 15036989 15037005 4 338 3.5 4.5 4.0 0.8 354 chr3L 15036651 intron Sytbeta - chr3L 15036828 intron Sytbeta - chr3L 15037005 intron Sytbeta - chr3L_4_15035001 chr3L_15035001 RAL-256 698 chr3L 15085049 15085078 chr3L 15086215 15086231 1360 6 1163 1.0 2.0 1.5 2.4 1182 chr3L 15085049 intron cp309 - chr3L 15085640 intron cp309 - chr3L 15086231 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-256 699 chr3L 15284580 15284600 chr3L 15284659 15284679 5 79 2.0 4.0 3.0 1.2 99 chr3L 15284580 intergenic not near genes chr3L 15284630 intergenic not near genes chr3L 15284679 intergenic not near genes chr3L_5_15280001 chr3L_15280001 RAL-256 700 chr3L 15418046 15418072 chr3L 15418124 15418153 7 82 3.5 4.0 3.8 1.5 107 chr3L 15418046 intergenic not near genes chr3L 15418100 intergenic not near genes chr3L 15418153 intergenic not near genes chr3L_7_15415001 chr3L_15415001 RAL-256 701 chr3L 15418499 15418522 chr3L 15418585 15418608 8 83 2.0 2.0 2.0 2.7 109 chr3L 15418499 intergenic not near genes chr3L 15418554 intergenic not near genes chr3L 15418608 intergenic not near genes chr3L_8_15415001 chr3L_15415001 RAL-256 702 chr3L 15444650 15444685 chr3L 15444744 15444776 12 89 2.5 2.0 2.2 3.8 126 chr3L 15444650 intergenic not near genes chr3L 15444713 intergenic not near genes chr3L 15444776 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-256 703 chr3L 15466522 15466553 chr3L 15466606 15466637 5 84 1.0 0.5 0.8 2.8 115 chr3L 15466522 intergenic not near genes chr3L 15466580 intergenic not near genes chr3L 15466637 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-256 704 chr3L 15616965 15616985 chr3L 15617044 15617056 4 73 1.5 3.5 2.5 1.1 91 chr3L 15616965 intron comm3 - chr3L 15617010 intron comm3 - chr3L 15617056 intron comm3 - chr3L_4_15615001 chr3L_15615001 RAL-256 705 chr3L 15773846 15773871 chr3L 15773926 15773951 6 78 2.0 2.0 2.0 2.0 105 chr3L 15773846 intergenic not near genes chr3L 15773898 intergenic not near genes chr3L 15773951 intergenic not near genes chr3L_6_15770001 chr3L_15770001 RAL-256 706 chr3L 15834994 15835017 chr3L 15835149 15835164 9 152 5.5 5.0 5.2 1.5 170 chr3L 15834994 intron CG18081 - chr3L 15835079 intron CG18081 - chr3L 15835164 intron CG18081 - chr3L_9_15835001 chr3L_15835001 RAL-256 707 chr3L 15899235 15899260 chr3L 15899785 15899827 jockey 6 560 0.0 2.0 1.0 3.0 592 chr3L 15899235 intergenic pHCl - chr3L 15899531 intergenic not near genes chr3L 15899827 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-256 708 chr3L 16162599 16162630 chr3L 16162682 16162712 4 83 1.0 0.0 0.5 2.7 113 chr3L 16162599 intron CG5151 - chr3L 16162656 intron CG5151 - chr3L 16162712 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-256 709 chr3L 16180350 16180366 chr3L 16180452 16180468 5 102 1.5 3.0 2.2 1.6 118 chr3L 16180350 intergenic not near genes chr3L 16180409 intergenic not near genes chr3L 16180468 intergenic not near genes chr3L_5_16180001 chr3L_16180001 RAL-256 710 chr3L 16184109 16184117 chr3L 16188928 16188936 X-element 4 4819 2.0 2.5 2.2 1.2 4827 chr3L 16184109 intergenic not near genes chr3L 16186522 intergenic not near genes chr3L 16188936 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-256 711 chr3L 16322825 16322857 chr3L 16322915 16322947 8 84 1.0 5.0 3.0 2.0 122 chr3L 16322825 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322947 intergenic not near genes chr3L_8_16320001 chr3L_16320001 RAL-256 712 chr3L 16457529 16457558 chr3L 16457624 16457652 4 94 0.5 2.0 1.2 1.8 123 chr3L 16457529 intron CG33158 + chr3L 16457590 intron CG33158 + chr3L 16457652 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-256 713 chr3L 16493974 16493992 chr3L 16494491 16494508 jockey 7 517 4.0 3.5 3.8 1.5 534 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494241 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494508 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-256 714 chr3L 16559058 16559084 chr3L 16559142 16559162 8 75 3.0 4.0 3.5 1.8 104 chr3L 16559058 intergenic not near genes chr3L 16559110 intergenic not near genes chr3L 16559162 intergenic not near genes chr3L_8_16555001 chr3L_16555001 RAL-256 715 chr3L 16616516 16616539 chr3L 16621844 16621867 297 4 5328 0.5 0.5 0.5 2.7 5351 chr3L 16616516 3` UTR Abl - chr3L 16619192 3` UTR Abl - chr3L 16621867 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-256 716 chr3L 16731353 16731367 chr3L 16731545 16731558 4 192 1.0 0.5 0.8 2.2 205 chr3L 16731353 intergenic not near genes chr3L 16731456 intergenic not near genes chr3L 16731558 intergenic not near genes chr3L_4_16730001 chr3L_16730001 RAL-256 717 chr3L 16818746 16818776 chr3L 16818822 16818850 5 76 1.5 0.0 0.8 2.8 104 chr3L 16818746 intron,intron nudC +,CG13024 - chr3L 16818798 intron,intron nudC +,CG13024 - chr3L 16818850 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-256 718 chr3L 16861028 16861050 chr3L 16861130 16861152 8 102 3.0 2.0 2.5 2.3 124 chr3L 16861028 intron,exon Rh4 -,CG13029 + chr3L 16861090 intron,intron Rh4 -,CG13029 + chr3L 16861152 intron,intron Rh4 -,CG13029 + chr3L_8_16860001 chr3L_16860001 RAL-256 719 chr3L 16890611 16890640 chr3L 16890698 16890728 6 89 0.5 1.5 1.0 3.0 117 chr3L 16890611 intron Lmpt + chr3L 16890670 intron Lmpt + chr3L 16890728 intron Lmpt + chr3L_6_16890001 chr3L_16890001 RAL-256 720 chr3L 16945735 16945755 chr3L 16954884 16954908 roo 6 9150 7.0 4.0 5.5 0.9 9173 chr3L 16945735 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954908 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-256 721 chr3L 17331063 17331084 chr3L 17331153 17331174 6 90 0.5 1.0 0.8 3.3 111 chr3L 17331063 intergenic not near genes chr3L 17331118 intergenic not near genes chr3L 17331174 intergenic not near genes chr3L_6_17330001 chr3L_17330001 RAL-256 722 chr3L 17510744 17510765 chr3L 17510828 17510848 9 80 2.0 2.0 2.0 3.0 104 chr3L 17510744 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-256 723 chr3L 17516990 17517013 chr3L 17524548 17524571 412 7 7556 3.0 5.5 4.2 1.3 7581 chr3L 17516990 intron CG7564 + chr3L 17520780 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-256 724 chr3L 17702360 17702379 chr3L 17702442 17702460 4 83 2.0 2.0 2.0 1.3 100 chr3L 17702360 intron Ccn + chr3L 17702410 intron Ccn + chr3L 17702460 intron Ccn + chr3L_4_17700001 chr3L_17700001 RAL-256 725 chr3L 17765551 17765587 chr3L 17765756 17765792 9 205 2.0 0.0 1.0 4.5 241 chr3L 17765551 intergenic not near genes chr3L 17765672 intergenic not near genes chr3L 17765792 intergenic not near genes chr3L_9_17765001 chr3L_17765001 RAL-256 726 chr3L 17836210 17836235 chr3L 17836287 17836312 6 76 1.0 0.0 0.5 4.0 102 chr3L 17836210 intron Grd + chr3L 17836261 intron Grd + chr3L 17836312 intron Grd + chr3L_6_17835001 chr3L_17835001 RAL-256 727 chr3L 17898432 17898465 chr3L 17898737 17898770 4 305 0.5 2.0 1.2 1.8 338 chr3L 17898432 intergenic Prestin - chr3L 17898601 intergenic Prestin - chr3L 17898770 intergenic Prestin - chr3L_4_17895001 chr3L_17895001 RAL-256 728 chr3L 17930164 17930189 chr3L 17930249 17930274 7 84 5.5 3.0 4.2 1.3 110 chr3L 17930164 intergenic not near genes chr3L 17930219 intergenic not near genes chr3L 17930274 intergenic not near genes chr3L_7_17930001 chr3L_17930001 RAL-256 729 chr3L 17968136 17968167 chr3L 17968217 17968248 8 80 1.5 2.0 1.8 2.9 112 chr3L 17968136 intron Eip75B - chr3L 17968192 intron Eip75B - chr3L 17968248 intron Eip75B - chr3L_8_17965001 chr3L_17965001 RAL-256 730 chr3L 17990103 17990129 chr3L 17990179 17990189 7 73 3.5 1.0 2.2 2.2 86 chr3L 17990103 intron Eip75B - chr3L 17990146 intron Eip75B - chr3L 17990189 intron Eip75B - chr3L_7_17990001 chr3L_17990001 RAL-256 731 chr3L 18006226 18006251 chr3L 18006350 18006375 4 124 1.5 5.0 3.2 1.0 149 chr3L 18006226 intron Eip75B - chr3L 18006300 intron Eip75B - chr3L 18006375 intron Eip75B - chr3L_4_18005001 chr3L_18005001 RAL-256 732 chr3L 18089638 18089646 chr3L 18089717 18089739 4 86 3.0 0.0 1.5 1.6 101 chr3L 18089638 exon CG13698 - chr3L 18089688 intron CG13698 - chr3L 18089739 intron CG13698 - chr3L_4_18085001 chr3L_18085001 RAL-256 733 chr3L 18092409 18092417 chr3L 18092534 18092540 4 124 4.0 6.0 5.0 0.7 131 chr3L 18092409 intron CG13698 - chr3L 18092474 intron CG13698 - chr3L 18092540 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-256 734 chr3L 18118215 18118233 chr3L 18118293 18118311 4 78 2.0 2.0 2.0 1.3 96 chr3L 18118215 3` UTR,intron CG32195 +,CG7341 + chr3L 18118263 3` UTR,intron CG32195 +,CG7341 + chr3L 18118311 3` UTR,intron CG32195 +,CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-256 735 chr3L 18223165 18223184 chr3L 18223248 18223266 4 83 1.0 0.0 0.5 2.7 101 chr3L 18223165 intergenic not near genes chr3L 18223216 intergenic not near genes chr3L 18223266 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-256 736 chr3L 18376096 18376109 chr3L 18376185 18376198 6 89 1.5 0.5 1.0 3.0 102 chr3L 18376096 intergenic not near genes chr3L 18376147 intergenic not near genes chr3L 18376198 intergenic not near genes chr3L_6_18375001 chr3L_18375001 RAL-256 737 chr3L 18422622 18422653 chr3L 18422720 18422752 11 99 1.0 2.5 1.8 3.9 130 chr3L 18422622 intergenic not near genes chr3L 18422687 intergenic not near genes chr3L 18422752 intergenic not near genes chr3L_11_18420001 chr3L_18420001 RAL-256 738 chr3L 18546703 18546723 chr3L 18546797 18546817 7 94 2.5 2.0 2.2 2.2 114 chr3L 18546703 intergenic not near genes chr3L 18546760 intergenic not near genes chr3L 18546817 intergenic not near genes chr3L_7_18545001 chr3L_18545001 RAL-256 739 chr3L 18656182 18656219 chr3L 18656267 18656304 13 80 3.0 4.5 3.8 2.7 122 chr3L 18656182 intron MYPT-75D + chr3L 18656243 intron MYPT-75D + chr3L 18656304 intron MYPT-75D + chr3L_13_18655001 chr3L_18655001 RAL-256 740 chr3L 18705096 18705129 chr3L 18705179 18705211 7 78 0.5 2.0 1.2 3.2 115 chr3L 18705096 intergenic not near genes chr3L 18705154 intergenic not near genes chr3L 18705211 intergenic not near genes chr3L_7_18705001 chr3L_18705001 RAL-256 741 chr3L 18721780 18721799 chr3L 18721871 18721890 5 91 3.5 2.0 2.8 1.3 110 chr3L 18721780 intergenic CG12477 - chr3L 18721835 intergenic CG12477 - chr3L 18721890 intergenic CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-256 742 chr3L 18730375 18730386 chr3L 18730555 18730566 5 179 7.0 1.0 4.0 1.0 191 chr3L 18730375 intergenic not near genes chr3L 18730470 intergenic not near genes chr3L 18730566 intergenic not near genes chr3L_5_18730001 chr3L_18730001 RAL-256 743 chr3L 18772411 18772439 chr3L 18781092 18781120 roo 12 8681 0.0 2.0 1.0 6.0 8709 chr3L 18772411 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_12_18775001 chr3L_18775001 RAL-256 744 chr3L 18833782 18833796 chr3L 18834946 18834958 1360 6 1164 3.0 4.5 3.8 1.2 1176 chr3L 18833782 intron Indy - chr3L 18834370 intron Indy - chr3L 18834958 intron Indy - chr3L_6_18830001 chr3L_18830001 RAL-256 745 chr3L 18896761 18896790 chr3L 18896896 18896909 7 132 2.0 1.5 1.8 2.5 148 chr3L 18896761 intron CG3902 - chr3L 18896835 intron CG3902 - chr3L 18896909 intron CG3902 - chr3L_7_18895001 chr3L_18895001 RAL-256 746 chr3L 18941708 18941736 chr3L 18941801 18941828 12 90 0.5 4.0 2.2 3.8 120 chr3L 18941708 intron CG32204 - chr3L 18941768 intron CG32204 - chr3L 18941828 intron CG32204 - chr3L_12_18940001 chr3L_18940001 RAL-256 747 chr3L 18969549 18969558 chr3L 18969625 18969634 4 75 3.5 1.5 2.5 1.1 85 chr3L 18969549 intergenic not near genes chr3L 18969592 intergenic not near genes chr3L 18969634 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-256 748 chr3L 19008849 19008858 chr3L 19009187 19009196 jockey 4 338 1.0 5.0 3.0 1.0 347 chr3L 19008849 intron nkd - chr3L 19009022 intron nkd - chr3L 19009196 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-256 749 chr3L 19025933 19025964 chr3L 19026017 19026048 4 84 2.5 0.5 1.5 1.6 115 chr3L 19025933 intron nkd - chr3L 19025990 intron nkd - chr3L 19026048 intron nkd - chr3L_4_19025001 chr3L_19025001 RAL-256 750 chr3L 19082040 19082067 chr3L 19082137 19082150 5 95 6.5 2.0 4.2 1.0 110 chr3L 19082040 intron Mkp3 - chr3L 19082095 intron Mkp3 - chr3L 19082150 intron Mkp3 - chr3L_5_19080001 chr3L_19080001 RAL-256 751 chr3L 19115645 19115672 chr3L 19115820 19115828 BS 8 174 5.5 1.0 3.2 1.9 183 chr3L 19115645 intron CG14082 - chr3L 19115736 intron CG14082 - chr3L 19115828 intron CG14082 - chr3L_8_19115001 chr3L_19115001 RAL-256 752 chr3L 19117052 19117074 chr3L 19124493 19124521 mdg1 14 7446 3.5 1.5 2.5 4.0 7469 chr3L 19117052 intron CG14082 - chr3L 19120786 intron CG14082 - chr3L 19124521 intron CG14082 - chr3L_14_19120001 chr3L_19120001 RAL-256 753 chr3L 19138559 19138588 chr3L 19138640 19138669 10 77 4.0 3.5 3.8 2.1 110 chr3L 19138559 intron CG14082 - chr3L 19138614 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_10_19135001 chr3L_19135001 RAL-256 754 chr3L 19208064 19208086 chr3L 19209438 19209459 Doc 5 1373 3.0 6.5 4.8 0.9 1395 chr3L 19208064 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209459 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-256 755 chr3L 19244112 19244131 chr3L 19244190 19244197 9 75 3.5 4.5 4.0 1.8 85 chr3L 19244112 intergenic not near genes chr3L 19244154 intergenic not near genes chr3L 19244197 intergenic not near genes chr3L_9_19240001 chr3L_19240001 RAL-256 756 chr3L 19488477 19488502 chr3L 19488558 19488584 4 82 0.5 0.5 0.5 2.7 107 chr3L 19488477 intergenic pncr009:3L -,CG32212 + chr3L 19488530 intergenic pncr009:3L -,CG32212 + chr3L 19488584 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-256 757 chr3L 19645171 19645202 chr3L 19645251 19645282 4 80 0.0 0.0 0.0 4.0 111 chr3L 19645171 intergenic not near genes chr3L 19645226 intergenic not near genes chr3L 19645282 intergenic not near genes chr3L_4_19645001 chr3L_19645001 RAL-256 758 chr3L 19861822 19861850 chr3L 19863610 19863638 S-element 4 1788 0.5 0.0 0.2 3.3 1816 chr3L 19861822 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863638 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-256 759 chr3L 19905093 19905117 chr3L 19905188 19905212 4 95 2.0 0.0 1.0 2.0 119 chr3L 19905093 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905152 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905212 intron,intron Mi-2 -,Su(Tpl) - chr3L_4_19905001 chr3L_19905001 RAL-256 760 chr3L 19981205 19981225 chr3L 19981285 19981305 5 80 0.5 1.0 0.8 2.8 100 chr3L 19981205 intergenic CG17732 + chr3L 19981255 intergenic CG17732 + chr3L 19981305 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-256 761 chr3L 20057560 20057589 chr3L 20057673 20057702 7 112 1.5 1.0 1.2 3.2 142 chr3L 20057560 intergenic not near genes chr3L 20057631 intergenic not near genes chr3L 20057702 intergenic not near genes chr3L_7_20055001 chr3L_20055001 RAL-256 762 chr3L 20143099 20143111 chr3L 20143179 20143191 4 80 1.5 2.5 2.0 1.3 92 chr3L 20143099 intergenic not near genes chr3L 20143145 intergenic not near genes chr3L 20143191 intergenic not near genes chr3L_4_20140001 chr3L_20140001 RAL-256 763 chr3L 20148283 20148316 chr3L 20148372 20148406 9 90 2.5 1.5 2.0 3.0 123 chr3L 20148283 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148406 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-256 764 chr3L 20257334 20257356 chr3L 20258454 20258476 pogo 5 1117 1.0 2.5 1.8 1.8 1142 chr3L 20257334 intron rdgC + chr3L 20257905 intron rdgC + chr3L 20258476 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-256 765 chr3L 20386949 20386970 chr3L 20387051 20387072 4 102 1.5 2.0 1.8 1.4 123 chr3L 20386949 intron fbl + chr3L 20387010 intron fbl + chr3L 20387072 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-256 766 chr3L 20426200 20426225 chr3L 20426368 20426393 8 168 3.0 2.5 2.8 2.1 193 chr3L 20426200 3` UTR CG5274 - chr3L 20426296 3` UTR CG5274 - chr3L 20426393 3` UTR CG5274 - chr3L_8_20425001 chr3L_20425001 RAL-256 767 chr3L 20476764 20476783 chr3L 20484363 20484380 springer 4 7598 1.5 2.0 1.8 1.4 7616 chr3L 20476764 3` UTR isoQC + chr3L 20480572 intergenic not near genes chr3L 20484380 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-256 768 chr3L 20662000 20662023 chr3L 20662077 20662088 12 77 3.5 1.5 2.5 3.4 88 chr3L 20662000 intergenic not near genes chr3L 20662044 intergenic not near genes chr3L 20662088 intergenic not near genes chr3L_12_20660001 chr3L_20660001 RAL-256 769 chr3L 20849281 20849298 chr3L 20849360 20849377 4 79 0.5 2.0 1.2 1.8 96 chr3L 20849281 intron CG32432 - chr3L 20849329 intron CG32432 - chr3L 20849377 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-256 770 chr3L 20849728 20849741 chr3L 20850077 20850090 5 349 1.5 3.5 2.5 1.4 362 chr3L 20849728 intron CG32432 - chr3L 20849909 intron CG32432 - chr3L 20850090 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-256 771 chr3L 20890490 20890523 chr3L 20890564 20890577 4 66 2.0 2.0 2.0 1.3 87 chr3L 20890490 intergenic not near genes chr3L 20890534 intergenic not near genes chr3L 20890577 intergenic not near genes chr3L_4_20890001 chr3L_20890001 RAL-256 772 chr3L 20913750 20913781 chr3L 20913832 20913860 8 79 2.5 2.5 2.5 2.3 110 chr3L 20913750 intergenic CR43930 - chr3L 20913805 intergenic CR43930 - chr3L 20913860 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-256 773 chr3L 20986757 20986791 chr3L 20986835 20986869 10 76 1.5 4.0 2.8 2.6 112 chr3L 20986757 intergenic not near genes chr3L 20986813 intergenic not near genes chr3L 20986869 intergenic not near genes chr3L_10_20985001 chr3L_20985001 RAL-256 774 chr3L 21014919 21014926 chr3L 21023398 21023407 Tirant 6 8480 4.5 4.0 4.2 1.2 8488 chr3L 21014919 intron skd - chr3L 21019163 intron skd - chr3L 21023407 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-256 775 chr3L 21014929 21014948 chr3L 21023395 21023427 Tirant 6 8478 2.0 3.5 2.8 1.6 8498 chr3L 21014929 intron skd - chr3L 21019178 intron skd - chr3L 21023427 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-256 776 chr3L 21039688 21039705 chr3L 21039778 21039796 4 91 1.0 0.5 0.8 2.2 108 chr3L 21039688 intron siz + chr3L 21039742 intron siz + chr3L 21039796 intron siz + chr3L_4_21035001 chr3L_21035001 RAL-256 777 chr3L 21082212 21082240 chr3L 21082289 21082318 6 76 1.0 1.0 1.0 3.0 106 chr3L 21082212 intron ko - chr3L 21082265 intron ko - chr3L 21082318 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-256 778 chr3L 21151864 21151896 chr3L 21156946 21156980 flea 6 5084 2.5 0.0 1.2 2.7 5116 chr3L 21151864 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-256 779 chr3L 21427850 21427881 chr3L 21427941 21427973 13 92 3.0 2.5 2.8 3.4 123 chr3L 21427850 intron,5` UTR barc -,CG33288 + chr3L 21427912 intron,5` UTR barc -,CG33288 + chr3L 21427973 intron,5` UTR barc -,CG33288 + chr3L_13_21425001 chr3L_21425001 RAL-256 780 chr3L 21498834 21498863 chr3L 21500469 21500482 1360 9 1634 3.0 4.0 3.5 2.0 1648 chr3L 21498834 intron Glg1 - chr3L 21499658 intron Glg1 - chr3L 21500482 intron Glg1 - chr3L_9_21495001 chr3L_21495001 RAL-256 781 chr3L 21905489 21905514 chr3L 21905590 21905612 6 101 5.0 2.0 3.5 1.3 123 chr3L 21905489 intron mub + chr3L 21905550 intron mub + chr3L 21905612 intron mub + chr3L_6_21905001 chr3L_21905001 RAL-256 782 chr3L 21970809 21970827 chr3L 21970900 21970916 4 90 1.0 4.0 2.5 1.1 107 chr3L 21970809 intergenic not near genes chr3L 21970862 intergenic not near genes chr3L 21970916 intergenic not near genes chr3L_4_21970001 chr3L_21970001 RAL-256 783 chr3L 22023232 22023244 chr3L 22023324 22023333 4 91 1.0 4.5 2.8 1.1 101 chr3L 22023232 intergenic not near genes chr3L 22023282 intergenic not near genes chr3L 22023333 intergenic not near genes chr3L_4_22020001 chr3L_22020001 RAL-256 784 chr3L 22099695 22099703 chr3L 22105872 22105889 3S18 4 6184 1.5 2.0 1.8 1.4 6194 chr3L 22099695 intergenic not near genes chr3L 22102792 intergenic not near genes chr3L 22105889 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-256 785 chr3L 22124812 22124837 chr3L 22124894 22124920 6 82 3.5 2.0 2.8 1.6 108 chr3L 22124812 intergenic not near genes chr3L 22124866 intergenic not near genes chr3L 22124920 intergenic not near genes chr3L_6_22120001 chr3L_22120001 RAL-256 786 chr3L 22152168 22152200 chr3L 22152251 22152283 5 83 1.5 2.0 1.8 1.8 115 chr3L 22152168 intron olf413 + chr3L 22152226 intron olf413 + chr3L 22152283 intron olf413 + chr3L_5_22150001 chr3L_22150001 RAL-256 787 chr3L 22166446 22166471 chr3L 22166524 22166549 8 77 3.5 2.0 2.8 2.1 103 chr3L 22166446 intron olf413 + chr3L 22166498 intron olf413 + chr3L 22166549 intron olf413 + chr3L_8_22165001 chr3L_22165001 RAL-256 788 chr3L 22411369 22411398 chr3L 22411446 22411471 5 71 3.0 5.0 4.0 1.0 102 chr3L 22411369 intergenic not near genes chr3L 22411420 intergenic not near genes chr3L 22411471 intergenic not near genes chr3L_5_22410001 chr3L_22410001 RAL-256 789 chr3L 22447194 22447230 chr3L 22447285 22447321 9 91 1.5 1.0 1.2 4.1 127 chr3L 22447194 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447321 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-256 790 chr3L 22543729 22543755 chr3L 22543806 22543832 7 76 0.5 3.0 1.8 2.5 103 chr3L 22543729 intergenic not near genes chr3L 22543780 intergenic not near genes chr3L 22543832 intergenic not near genes chr3L_7_22540001 chr3L_22540001 RAL-256 791 chr3L 22555771 22555780 chr3L 22563239 22563246 blood 5 7467 3.0 1.5 2.2 1.6 7475 chr3L 22555771 intergenic not near genes chr3L 22559508 intergenic not near genes chr3L 22563246 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-256 792 chr3L 22555786 22555793 chr3L 22563238 22563238 blood 4 7454 3.5 1.5 2.5 1.1 7452 chr3L 22555786 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563238 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-256 793 chr3L 22570424 22570456 chr3L 22570568 22570599 8 144 3.5 2.0 2.8 2.1 175 chr3L 22570424 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570599 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-256 794 chr3L 22577625 22577649 chr3L 22582408 22582436 Doc 7 4787 2.0 3.0 2.5 2.0 4811 chr3L 22577625 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-256 795 chr3L 22617197 22617207 chr3L 22624647 22624659 blood 5 7452 5.0 2.0 3.5 1.1 7462 chr3L 22617197 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624659 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-256 796 chr3L 22631932 22631952 chr3L 22897039 22897059 Ivk 5 265107 19.0 4.0 11.5 0.4 265127 chr3L 22631932 intron CG14459 - chr3L 22764496 intron SPoCk + chr3L 22897059 intergenic CR44688 + chr3L_5_22760001 chr3L_22760001 RAL-256 797 chr3L 22652324 22652354 chr3L 22652461 22652492 11 138 2.5 2.5 2.5 3.1 168 chr3L 22652324 exon CG33772 - chr3L 22652408 intron CG33772 - chr3L 22652492 exon CG33772 - chr3L_11_22650001 chr3L_22650001 RAL-256 798 chr3L 22761389 22761417 chr3L 22766823 22766851 Ivk 7 5433 1.0 1.5 1.2 3.2 5462 chr3L 22761389 intron SPoCk + chr3L 22764120 intron SPoCk + chr3L 22766851 intron SPoCk + chr3L_7_22760001 chr3L_22760001 RAL-256 799 chr3L 22865981 22866007 chr3L 22867114 22867140 Doc 5 1133 2.5 2.0 2.2 1.6 1159 chr3L 22865981 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867140 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-256 800 chr3L 22632833 22632845 chr3L 22896973 22896987 Ivk 6 264142 17.0 8.5 12.8 0.4 264154 chr3L 22632833 intron CG14459 - chr3L 22764910 intron SPoCk + chr3L 22896987 intergenic CR44688 + chr3L_6_22760001 chr3L_22760001 RAL-256 801 chr3L 19220633 19220637 chr3L 22908066 22908066 7 3687432 15.5 4.0 9.8 0.6 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-256 802 chr3L 22909018 22909054 chr3L 22909109 22909145 17 90 1.5 2.5 2.0 5.7 127 chr3L 22909018 intergenic CR45661 + chr3L 22909082 intergenic CR45661 + chr3L 22909145 intergenic CR45661 + chr3L_17_22905001 chr3L_22905001 RAL-256 803 chr3L 22974360 22974389 chr3L 22974439 22974441 6 74 2.5 0.5 1.5 2.4 81 chr3L 22974360 intergenic not near genes chr3L 22974400 intergenic not near genes chr3L 22974441 intergenic not near genes chr3L_6_22970001 chr3L_22970001 RAL-256 804 chr3L 23182281 23182293 chr3L 23182373 23182407 7 111 5.0 5.0 5.0 1.2 126 chr3L 23182281 intron CG34031 + chr3L 23182344 intron CG34031 + chr3L 23182407 intron CG34031 + chr3L_7_23180001 chr3L_23180001 RAL-256 805 chr3L 23259867 23259888 chr3L 23259944 23259968 6 79 3.5 1.0 2.2 1.9 101 chr3L 23259867 intron nAChRalpha4 + chr3L 23259918 intron nAChRalpha4 + chr3L 23259968 intron nAChRalpha4 + chr3L_6_23255001 chr3L_23255001 RAL-256 806 chr3L 23290485 23290502 chr3L 23295315 23295334 X-element 5 4831 3.5 2.5 3.0 1.2 4849 chr3L 23290485 intergenic not near genes chr3L 23292910 intergenic not near genes chr3L 23295334 intergenic not near genes chr3L_5_23290001 chr3L_23290001 RAL-256 807 chr3L 23875532 23875540 chr3L 23875613 23875621 4 80 3.0 3.5 3.2 1.0 89 chr3L 23875532 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875621 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-256 808 chr3L 23875542 23875558 chr3L 23875608 23875632 4 68 1.0 3.5 2.2 1.2 90 chr3L 23875542 intron CG40470 - chr3L 23875587 intron CG40470 - chr3L 23875632 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-256 809 chr3L 24168792 24168818 chr3L 24176119 24176146 ZAM 6 7328 6.0 6.5 6.2 0.8 7354 chr3L 24168792 intron Snap25 + chr3L 24172469 intron Snap25 + chr3L 24176146 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-256 810 chr3L 25464037 25464097 chr3L 25464107 25464195 6 88 2.0 0.5 1.2 2.7 158 chr3L 25464037 intergenic not near genes chr3L 25464116 intergenic not near genes chr3L 25464195 intergenic not near genes chr3L_6_25460001 chr3L_25460001 RAL-256 811 chr3L 25512796 25512807 chr3L 25512853 25512884 4 72 1.0 1.0 1.0 2.0 88 chr3L 25512796 intron CG41343 - chr3L 25512840 intron CG41343 - chr3L 25512884 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-256 812 chr3L 25513578 25513609 chr3L 25513657 25513688 9 79 1.0 1.0 1.0 4.5 110 chr3L 25513578 intron CG41343 - chr3L 25513633 intron CG41343 - chr3L 25513688 intron CG41343 - chr3L_9_25510001 chr3L_25510001 RAL-256 813 chr3L 25514874 25514904 chr3L 25514966 25514994 13 90 3.5 4.0 3.8 2.7 120 chr3L 25514874 intron CG41343 - chr3L 25514934 intron CG41343 - chr3L 25514994 intron CG41343 - chr3L_13_25510001 chr3L_25510001 RAL-256 814 chr3L 25627819 25627826 chr3L 25627901 25627912 4 85 1.0 3.5 2.2 1.2 93 chr3L 25627819 intron CG41343 - chr3L 25627866 intron CG41343 - chr3L 25627912 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-256 815 chr3L 25842480 25842497 chr3L 25842564 25842583 5 86 3.0 2.5 2.8 1.3 103 chr3L 25842480 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842583 intron CG40178 - chr3L_5_25840001 chr3L_25840001 RAL-256 816 chr3L 26694931 26694958 chr3L 26695011 26695038 6 78 0.5 1.0 0.8 3.3 107 chr3L 26694931 intergenic not near genes chr3L 26694984 intergenic not near genes chr3L 26695038 intergenic not near genes chr3L_6_26690001 chr3L_26690001 RAL-256 817 chr3L 27167949 27167978 chr3L 27168065 27168098 12 118 2.5 4.0 3.2 2.9 149 chr3L 27167949 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168098 intergenic not near genes chr3L_12_27165001 chr3L_27165001 RAL-256 818 chr3L 27284247 27284280 chr3L 27284353 27284385 11 104 5.0 2.0 3.5 2.4 138 chr3L 27284247 intron Dbp80 + chr3L 27284316 intron Dbp80 + chr3L 27284385 intron Dbp80 + chr3L_11_27280001 chr3L_27280001 RAL-256 819 chr3L 27390688 27390710 chr3L 27390767 27390789 5 79 38.5 39.0 38.8 0.1 101 chr3L 27390688 intron Dbp80 + chr3L 27390738 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-256 820 chr3L 27727640 27727656 chr3L 27728747 27728753 G-element 4 1104 4.5 4.0 4.2 0.8 1113 chr3L 27727640 intergenic not near genes chr3L 27728196 intergenic not near genes chr3L 27728753 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-256 821 chr3R 1443438 1443452 chr3R 1443514 1443528 4 76 0.5 0.0 0.2 3.3 90 chr3R 1443438 intron CG40155 + chr3R 1443483 intron CG40155 + chr3R 1443528 intron CG40155 + chr3R_4_1440001 chr3R_1440001 RAL-256 822 chr3R 2447006 2447017 chr3R 2449584 2449595 Burdock 4 2579 40.0 14.5 27.2 0.1 2589 chr3R 2447006 intergenic not near genes chr3R 2448300 intergenic not near genes chr3R 2449595 intergenic not near genes chr3R_4_2445001 chr3R_2445001 RAL-256 823 chr3R 2534133 2534162 chr3R 2541702 2541710 15 7562 16.0 8.5 12.2 1.1 7577 chr3R 2534133 intergenic not near genes chr3R 2537922 intergenic not near genes chr3R 2541710 intergenic not near genes chr3R_15_2535001 chr3R_2535001 RAL-256 824 chr3R 4063809 4063828 chr3R 4069089 4069107 10 5279 4.5 7.5 6.0 1.4 5298 chr3R 4063809 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069107 intergenic not near genes chr3R_10_4065001 chr3R_4065001 RAL-256 825 chr3R 4599301 4599316 chr3R 4599385 4599400 5 84 2.5 1.0 1.8 1.8 99 chr3R 4599301 intron CR44317 - chr3R 4599350 intron CR44317 - chr3R 4599400 intron CR44317 - chr3R_5_4595001 chr3R_4595001 RAL-256 826 chr3R 4609551 4609577 chr3R 4610715 4610740 1360 4 1164 1.5 2.5 2.0 1.3 1189 chr3R 4609551 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610740 intergenic not near genes chr3R_4_4610001 chr3R_4610001 RAL-256 827 chr3R 4625690 4625712 chr3R 4625766 4625794 8 77 1.0 4.5 2.8 2.1 104 chr3R 4625690 intron 5-HT2A + chr3R 4625742 intron 5-HT2A + chr3R 4625794 intron 5-HT2A + chr3R_8_4625001 chr3R_4625001 RAL-256 828 chr3R 4657293 4657311 chr3R 4657381 4657400 6 89 0.0 2.5 1.2 2.7 107 chr3R 4657293 intron spartin + chr3R 4657346 intron spartin + chr3R 4657400 intron spartin + chr3R_6_4655001 chr3R_4655001 RAL-256 829 chr3R 4665212 4665242 chr3R 4665387 4665417 6 175 1.0 2.0 1.5 2.4 205 chr3R 4665212 intron CG43427 + chr3R 4665314 intron CG43427 + chr3R 4665417 intron CG43427 + chr3R_6_4665001 chr3R_4665001 RAL-256 830 chr3R 4753240 4753273 chr3R 4757542 4757565 F-element 10 4300 5.5 7.0 6.2 1.4 4325 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755402 intron,intron atms +,CG44098 - chr3R 4757565 intron,exon atms +,CG44098 - chr3R_10_4755001 chr3R_4755001 RAL-256 831 chr3R 4759719 4759749 chr3R 4761216 4761246 hopper2 7 1497 1.0 6.0 3.5 1.6 1527 chr3R 4759719 intron,intron atms +,CG44098 - chr3R 4760482 intron,intron atms +,CG44098 - chr3R 4761246 intron,intron atms +,CG44098 - chr3R_7_4760001 chr3R_4760001 RAL-256 832 chr3R 4769164 4769179 chr3R 4769242 4769257 4 78 3.0 3.5 3.2 1.0 93 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769210 intron,intron atms +,CG44098 - chr3R 4769257 intron,intron atms +,CG44098 - chr3R_4_4765001 chr3R_4765001 RAL-256 833 chr3R 4887487 4887511 chr3R 4894864 4894888 rover 4 7377 2.5 3.0 2.8 1.1 7401 chr3R 4887487 intergenic not near genes chr3R 4891188 intergenic not near genes chr3R 4894888 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-256 834 chr3R 5067979 5068006 chr3R 5073496 5073523 mdg3 5 5517 2.5 2.5 2.5 1.4 5544 chr3R 5067979 intergenic not near genes chr3R 5070751 intergenic not near genes chr3R 5073523 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-256 835 chr3R 5112745 5112761 chr3R 5112838 5112849 4 90 7.0 5.5 6.2 0.6 104 chr3R 5112745 intergenic not near genes chr3R 5112797 intergenic not near genes chr3R 5112849 intergenic not near genes chr3R_4_5110001 chr3R_5110001 RAL-256 836 chr3R 5338404 5338429 chr3R 5343581 5343606 Rt1c 7 5176 2.5 4.5 3.5 1.6 5202 chr3R 5338404 intron mtd - chr3R 5341005 intron mtd - chr3R 5343606 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-256 837 chr3R 5377979 5378001 chr3R 5378055 5378076 6 75 5.0 2.0 3.5 1.3 97 chr3R 5377979 intergenic 7B2 +,kkv - chr3R 5378028 intergenic 7B2 +,kkv - chr3R 5378076 intergenic kkv -,7B2 + chr3R_6_5375001 chr3R_5375001 RAL-256 838 chr3R 5712081 5712113 chr3R 5712169 5712201 7 88 0.5 1.0 0.8 3.9 120 chr3R 5712081 3` UTR plx + chr3R 5712141 3` UTR plx + chr3R 5712201 3` UTR plx + chr3R_7_5710001 chr3R_5710001 RAL-256 839 chr3R 5746024 5746042 chr3R 5746264 5746283 pogo 8 241 1.5 3.5 2.5 2.3 259 chr3R 5746024 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746283 3` UTR Madm + chr3R_8_5745001 chr3R_5745001 RAL-256 840 chr3R 5809115 5809140 chr3R 5809356 5809381 pogo 4 241 2.5 1.0 1.8 1.4 266 chr3R 5809115 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809381 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-256 841 chr3R 5880789 5880819 chr3R 5881133 5881139 11 343 4.0 3.0 3.5 2.4 350 chr3R 5880789 intron CG34113 - chr3R 5880964 intron CG34113 - chr3R 5881139 intron CG34113 - chr3R_11_5880001 chr3R_5880001 RAL-256 842 chr3R 5927569 5927591 chr3R 5927809 5927831 pogo 5 240 1.5 0.5 1.0 2.5 262 chr3R 5927569 intron CG34113 - chr3R 5927700 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-256 843 chr3R 5947964 5947997 chr3R 5948059 5948091 8 90 2.0 2.5 2.2 2.5 127 chr3R 5947964 intron CG34113 - chr3R 5948028 intron CG34113 - chr3R 5948091 intron CG34113 - chr3R_8_5945001 chr3R_5945001 RAL-256 844 chr3R 6015965 6015992 chr3R 6024446 6024473 Tirant 7 8481 1.5 3.5 2.5 2.0 8508 chr3R 6015965 intergenic not near genes chr3R 6020219 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_7_6020001 chr3R_6020001 RAL-256 845 chr3R 6059870 6059900 chr3R 6059956 6059967 7 81 1.0 5.0 3.0 1.8 97 chr3R 6059870 intergenic not near genes chr3R 6059918 intergenic not near genes chr3R 6059967 intergenic not near genes chr3R_7_6055001 chr3R_6055001 RAL-256 846 chr3R 6158511 6158539 chr3R 6167094 6167122 Tirant 7 8583 2.0 2.5 2.2 2.2 8611 chr3R 6158511 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167122 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-256 847 chr3R 6248503 6248530 chr3R 6248590 6248617 5 87 2.0 2.0 2.0 1.7 114 chr3R 6248503 intergenic Osi7 + chr3R 6248560 intergenic Osi7 + chr3R 6248617 intergenic Osi7 + chr3R_5_6245001 chr3R_6245001 RAL-256 848 chr3R 6460222 6460242 chr3R 6460373 6460396 5 153 2.5 5.0 3.8 1.0 174 chr3R 6460222 intergenic not near genes chr3R 6460309 intergenic not near genes chr3R 6460396 intergenic not near genes chr3R_5_6460001 chr3R_6460001 RAL-256 849 chr3R 6578895 6578911 chr3R 6579007 6579031 9 119 1.0 6.5 3.8 1.9 136 chr3R 6578895 intron dpr11 - chr3R 6578963 intron dpr11 - chr3R 6579031 intron dpr11 - chr3R_9_6575001 chr3R_6575001 RAL-256 850 chr3R 6737504 6737531 chr3R 6739285 6739318 Doc 8 1786 4.0 2.5 3.2 1.9 1814 chr3R 6737504 intron pb - chr3R 6738411 intron pb - chr3R 6739318 intron pb - chr3R_8_6735001 chr3R_6735001 RAL-256 851 chr3R 6978880 6978915 chr3R 6978965 6978981 5 81 1.0 0.5 0.8 2.8 101 chr3R 6978880 intron Antp - chr3R 6978930 intron Antp - chr3R 6978981 intron Antp - chr3R_5_6975001 chr3R_6975001 RAL-256 852 chr3R 7092782 7092811 chr3R 7093346 7093375 13 563 4.0 3.5 3.8 2.7 593 chr3R 7092782 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093375 3` UTR CR43685 - chr3R_13_7090001 chr3R_7090001 RAL-256 853 chr3R 7103289 7103307 chr3R 7103363 7103382 7 74 1.5 3.0 2.2 2.2 93 chr3R 7103289 intron Alh - chr3R 7103336 intron Alh - chr3R 7103382 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-256 854 chr3R 7105324 7105353 chr3R 7105407 7105435 6 83 0.5 4.0 2.2 1.9 111 chr3R 7105324 intron Alh - chr3R 7105380 intron Alh - chr3R 7105435 intron Alh - chr3R_6_7105001 chr3R_7105001 RAL-256 855 chr3R 7447993 7448009 chr3R 7448071 7448087 4 78 1.0 1.5 1.2 1.8 94 chr3R 7447993 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448087 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-256 856 chr3R 7550077 7550099 chr3R 7550160 7550182 5 83 1.0 1.5 1.2 2.3 105 chr3R 7550077 intergenic not near genes chr3R 7550130 intergenic not near genes chr3R 7550182 intergenic not near genes chr3R_5_7550001 chr3R_7550001 RAL-256 857 chr3R 7677923 7677947 chr3R 7678036 7678060 4 112 1.0 1.5 1.2 1.8 137 chr3R 7677923 intron Nlg1 + chr3R 7677992 intron Nlg1 + chr3R 7678060 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-256 858 chr3R 7729471 7729497 chr3R 7737404 7737435 Stalker2 10 7936 1.5 2.5 2.0 3.3 7964 chr3R 7729471 intergenic not near genes chr3R 7733453 intergenic not near genes chr3R 7737435 intergenic not near genes chr3R_10_7730001 chr3R_7730001 RAL-256 859 chr3R 7821719 7821746 chr3R 7821815 7821820 6 92 1.0 0.5 0.8 3.3 101 chr3R 7821719 intron CG34384 + chr3R 7821770 intron CG34384 + chr3R 7821820 intron CG34384 + chr3R_6_7820001 chr3R_7820001 RAL-256 860 chr3R 7830302 7830331 chr3R 7830452 7830482 10 151 1.5 1.0 1.2 4.5 180 chr3R 7830302 intron CG34384 + chr3R 7830392 intron CG34384 + chr3R 7830482 intron CG34384 + chr3R_10_7830001 chr3R_7830001 RAL-256 861 chr3R 7951460 7951481 chr3R 7951559 7951580 6 99 1.0 1.5 1.2 2.7 120 chr3R 7951460 intron dsx - chr3R 7951520 intron dsx - chr3R 7951580 intron dsx - chr3R_6_7950001 chr3R_7950001 RAL-256 862 chr3R 8090274 8090302 chr3R 8090451 8090479 5 177 1.5 1.0 1.2 2.3 205 chr3R 8090274 5` UTR CR44330 + chr3R 8090376 intergenic CR44330 + chr3R 8090479 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-256 863 chr3R 8101779 8101793 chr3R 8104863 8104877 G2 4 3084 4.5 1.5 3.0 1.0 3098 chr3R 8101779 exon CG7900 + chr3R 8103328 intron CG7900 + chr3R 8104877 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-256 864 chr3R 8213019 8213042 chr3R 8213100 8213124 6 82 3.0 2.0 2.5 1.7 105 chr3R 8213019 intergenic not near genes chr3R 8213072 intergenic not near genes chr3R 8213124 intergenic not near genes chr3R_6_8210001 chr3R_8210001 RAL-256 865 chr3R 8255508 8255532 chr3R 8255597 8255598 7 85 3.5 3.0 3.2 1.7 90 chr3R 8255508 intron mtg + chr3R 8255553 intron mtg + chr3R 8255598 intron mtg + chr3R_7_8255001 chr3R_8255001 RAL-256 866 chr3R 8273735 8273748 chr3R 8273820 8273835 4 86 3.0 1.0 2.0 1.3 100 chr3R 8273735 intergenic not near genes chr3R 8273785 intergenic not near genes chr3R 8273835 intergenic not near genes chr3R_4_8270001 chr3R_8270001 RAL-256 867 chr3R 8339246 8339247 chr3R 21907534 21907536 19 13568289 16.5 17.0 16.8 1.1 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_19_15120001 chr3R_15120001 RAL-256 868 chr3R 8403005 8403037 chr3R 8412171 8412201 roo 15 9164 3.5 6.5 5.0 2.5 9196 chr3R 8403005 intron CG45263 - chr3R 8407603 intron CG45263 - chr3R 8412201 intron CG45263 - chr3R_15_8405001 chr3R_8405001 RAL-256 869 chr3R 8552379 8552399 chr3R 8552452 8552479 6 78 2.0 5.5 3.8 1.2 100 chr3R 8552379 intergenic Or85d + chr3R 8552429 intergenic Or85d + chr3R 8552479 intergenic Or85d + chr3R_6_8550001 chr3R_8550001 RAL-256 870 chr3R 8555538 8555562 chr3R 8555710 8555733 8 172 1.5 2.0 1.8 2.9 195 chr3R 8555538 intergenic not near genes chr3R 8555636 intergenic not near genes chr3R 8555733 intergenic not near genes chr3R_8_8555001 chr3R_8555001 RAL-256 871 chr3R 8601776 8601799 chr3R 8610929 8610952 roo 4 9152 2.5 3.0 2.8 1.1 9176 chr3R 8601776 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-256 872 chr3R 8636948 8636965 chr3R 8637243 8637267 4 296 3.0 2.5 2.8 1.1 319 chr3R 8636948 intergenic not near genes chr3R 8637108 intergenic not near genes chr3R 8637267 intergenic not near genes chr3R_4_8635001 chr3R_8635001 RAL-256 873 chr3R 8707364 8707385 chr3R 8709803 8709826 jockey 6 2441 4.5 3.5 4.0 1.2 2462 chr3R 8707364 intergenic not near genes chr3R 8708595 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-256 874 chr3R 8717388 8717422 chr3R 8717557 8717587 13 165 2.5 5.0 3.8 2.7 199 chr3R 8717388 intron,intron Cks85A -,CG8116 + chr3R 8717488 intron,intron Cks85A -,CG8116 + chr3R 8717587 intron,intron Cks85A -,CG8116 + chr3R_13_8715001 chr3R_8715001 RAL-256 875 chr3R 8757485 8757513 chr3R 8757562 8757589 8 76 4.5 1.0 2.8 2.1 104 chr3R 8757485 intron,intron CG11768 -,CG34135 - chr3R 8757537 intron,intron CG11768 -,CG34135 - chr3R 8757589 intron,intron CG11768 -,CG34135 - chr3R_8_8755001 chr3R_8755001 RAL-256 876 chr3R 8917890 8917910 chr3R 8917970 8917990 7 80 1.0 2.0 1.5 2.8 100 chr3R 8917890 intron pyd - chr3R 8917940 intron pyd - chr3R 8917990 intron pyd - chr3R_7_8915001 chr3R_8915001 RAL-256 877 chr3R 9081747 9081778 chr3R 9081856 9081871 4 98 9.0 12.5 10.8 0.3 124 chr3R 9081747 intron pum - chr3R 9081809 intron pum - chr3R 9081871 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-256 878 chr3R 9082045 9082071 chr3R 9082136 9082165 6 93 2.5 2.0 2.2 1.9 120 chr3R 9082045 intron pum - chr3R 9082105 intron pum - chr3R 9082165 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-256 879 chr3R 9191726 9191740 chr3R 9191918 9191931 5 192 5.0 4.0 4.5 0.9 205 chr3R 9191726 intron pum - chr3R 9191828 intron pum - chr3R 9191931 intron pum - chr3R_5_9190001 chr3R_9190001 RAL-256 880 chr3R 9289172 9289186 chr3R 9289431 9289451 6 264 2.0 2.5 2.2 1.9 279 chr3R 9289172 intergenic not near genes chr3R 9289312 intergenic not near genes chr3R 9289451 intergenic not near genes chr3R_6_9285001 chr3R_9285001 RAL-256 881 chr3R 9382830 9382849 chr3R 9382941 9382974 5 122 1.0 1.0 1.0 2.5 144 chr3R 9382830 intron FER - chr3R 9382902 intron FER - chr3R 9382974 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-256 882 chr3R 9702259 9702292 chr3R 9702335 9702364 5 75 0.5 4.5 2.5 1.4 105 chr3R 9702259 intron Unc-115a - chr3R 9702312 intron Unc-115a - chr3R 9702364 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-256 883 chr3R 9824921 9824933 chr3R 9825196 9825199 4 276 0.5 0.5 0.5 2.7 278 chr3R 9824921 intergenic CR42858 - chr3R 9825060 intergenic CR42858 - chr3R 9825199 intergenic CR42858 - chr3R_4_9825001 chr3R_9825001 RAL-256 884 chr3R 10085958 10085978 chr3R 10086256 10086275 5 298 1.0 4.0 2.5 1.4 317 chr3R 10085958 intron CR45054 + chr3R 10086116 intron CR45054 + chr3R 10086275 intron CR45054 + chr3R_5_10085001 chr3R_10085001 RAL-256 885 chr3R 10129826 10129850 chr3R 10129983 10130007 9 154 6.0 1.0 3.5 2.0 181 chr3R 10129826 intron tws - chr3R 10129916 intron tws - chr3R 10130007 intron tws - chr3R_9_10125001 chr3R_10125001 RAL-256 886 chr3R 10148020 10148053 chr3R 10148165 10148198 12 145 2.5 0.5 1.5 4.8 178 chr3R 10148020 intron Invadolysin + chr3R 10148109 intron Invadolysin + chr3R 10148198 intron Invadolysin + chr3R_12_10145001 chr3R_10145001 RAL-256 887 chr3R 10282055 10282081 chr3R 10282166 10282192 5 111 2.5 1.5 2.0 1.7 137 chr3R 10282055 intron CG43143 + chr3R 10282124 intron CG43143 + chr3R 10282192 intron CG43143 + chr3R_5_10280001 chr3R_10280001 RAL-256 888 chr3R 10296296 10296319 chr3R 10296378 10296387 6 77 2.5 5.5 4.0 1.2 91 chr3R 10296296 intron CG43143 + chr3R 10296342 intron CG43143 + chr3R 10296387 intron CG43143 + chr3R_6_10295001 chr3R_10295001 RAL-256 889 chr3R 10531870 10531897 chr3R 10531951 10531977 6 81 0.0 0.5 0.2 5.0 107 chr3R 10531870 intron hth - chr3R 10531924 intron hth - chr3R 10531977 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-256 890 chr3R 10553835 10553868 chr3R 10553924 10553957 12 88 1.5 4.5 3.0 3.0 122 chr3R 10553835 intron hth - chr3R 10553896 intron hth - chr3R 10553957 intron hth - chr3R_12_10550001 chr3R_10550001 RAL-256 891 chr3R 10596627 10596638 chr3R 10596703 10596712 5 74 2.0 2.5 2.2 1.6 85 chr3R 10596627 intron hth - chr3R 10596670 intron hth - chr3R 10596712 intron hth - chr3R_5_10595001 chr3R_10595001 RAL-256 892 chr3R 10646105 10646133 chr3R 10646254 10646284 4 148 3.0 1.5 2.2 1.2 179 chr3R 10646105 intergenic CR44018 + chr3R 10646194 intergenic CR44018 + chr3R 10646284 intergenic not near genes chr3R_4_10645001 chr3R_10645001 RAL-256 893 chr3R 10723763 10723779 chr3R 10723854 10723871 4 92 2.5 0.5 1.5 1.6 108 chr3R 10723763 intergenic not near genes chr3R 10723817 intergenic not near genes chr3R 10723871 intergenic not near genes chr3R_4_10720001 chr3R_10720001 RAL-256 894 chr3R 10727645 10727678 chr3R 10727725 10727757 9 77 1.0 4.0 2.5 2.6 112 chr3R 10727645 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727757 intergenic not near genes chr3R_9_10725001 chr3R_10725001 RAL-256 895 chr3R 10886872 10886901 chr3R 10886952 10886981 8 80 0.5 2.5 1.5 3.2 109 chr3R 10886872 intron Leash + chr3R 10886926 intron Leash + chr3R 10886981 intron Leash + chr3R_8_10885001 chr3R_10885001 RAL-256 896 chr3R 10920046 10920067 chr3R 10920121 10920145 5 77 0.5 4.0 2.2 1.6 99 chr3R 10920046 intergenic not near genes chr3R 10920096 intergenic not near genes chr3R 10920145 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-256 897 chr3R 10942219 10942231 chr3R 10942301 10942313 5 82 1.5 0.5 1.0 2.5 94 chr3R 10942219 intergenic not near genes chr3R 10942266 intergenic not near genes chr3R 10942313 intergenic not near genes chr3R_5_10940001 chr3R_10940001 RAL-256 898 chr3R 10979677 10979684 chr3R 10979759 10979766 4 82 1.0 4.0 2.5 1.1 89 chr3R 10979677 intron CG34114 + chr3R 10979722 intron CG34114 + chr3R 10979766 intron CG34114 + chr3R_4_10975001 chr3R_10975001 RAL-256 899 chr3R 11130803 11130835 chr3R 11130975 11131007 8 172 1.5 1.5 1.5 3.2 204 chr3R 11130803 intergenic not near genes chr3R 11130905 intergenic not near genes chr3R 11131007 intergenic not near genes chr3R_8_11130001 chr3R_11130001 RAL-256 900 chr3R 11144170 11144201 chr3R 11144548 11144579 6 378 0.5 0.5 0.5 4.0 409 chr3R 11144170 intergenic CheA86a - chr3R 11144374 3` UTR CheA86a - chr3R 11144579 exon CheA86a - chr3R_6_11140001 chr3R_11140001 RAL-256 901 chr3R 11197998 11198016 chr3R 11198096 11198115 6 99 4.0 5.0 4.5 1.1 117 chr3R 11197998 intron cu + chr3R 11198056 intron cu + chr3R 11198115 intron cu + chr3R_6_11195001 chr3R_11195001 RAL-256 902 chr3R 11242255 11242281 chr3R 11242340 11242369 12 88 2.0 2.0 2.0 4.0 114 chr3R 11242255 3` UTR CG17734 - chr3R 11242312 3` UTR CG17734 - chr3R 11242369 3` UTR CG17734 - chr3R_12_11240001 chr3R_11240001 RAL-256 903 chr3R 11302739 11302751 chr3R 11302821 11302833 4 82 2.0 8.0 5.0 0.7 94 chr3R 11302739 intron CR31386 - chr3R 11302786 intron CR31386 - chr3R 11302833 intron CR31386 - chr3R_4_11300001 chr3R_11300001 RAL-256 904 chr3R 11379236 11379265 chr3R 11388391 11388420 roo 7 9155 3.0 1.0 2.0 2.3 9184 chr3R 11379236 intron pros + chr3R 11383828 intron pros + chr3R 11388420 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-256 905 chr3R 11694724 11694740 chr3R 11694817 11694833 5 93 0.0 0.5 0.2 4.2 109 chr3R 11694724 intergenic Fer3 - chr3R 11694778 intergenic Fer3 - chr3R 11694833 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-256 906 chr3R 11734162 11734190 chr3R 11734280 11734307 6 118 2.0 1.0 1.5 2.4 145 chr3R 11734162 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734307 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-256 907 chr3R 11763932 11763942 chr3R 11764010 11764022 5 79 3.5 2.0 2.8 1.3 90 chr3R 11763932 5` UTR Lk6 - chr3R 11763977 5` UTR Lk6 - chr3R 11764022 5` UTR Lk6 - chr3R_5_11760001 chr3R_11760001 RAL-256 908 chr3R 11841060 11841098 chr3R 11846251 11846289 BS 10 5186 3.0 2.0 2.5 2.9 5229 chr3R 11841060 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846289 intron CG6959 - chr3R_10_11840001 chr3R_11840001 RAL-256 909 chr3R 11920976 11920995 chr3R 11921073 11921092 4 97 3.0 5.5 4.2 0.8 116 chr3R 11920976 intron Cad87A - chr3R 11921034 intron Cad87A - chr3R 11921092 intron Cad87A - chr3R_4_11920001 chr3R_11920001 RAL-256 910 chr3R 11920998 11921002 chr3R 11921071 11921099 5 90 3.0 4.0 3.5 1.1 101 chr3R 11920998 intron Cad87A - chr3R 11921048 intron Cad87A - chr3R 11921099 intron Cad87A - chr3R_5_11920001 chr3R_11920001 RAL-256 911 chr3R 12036045 12036065 chr3R 12036128 12036143 4 82 0.5 2.0 1.2 1.8 98 chr3R 12036045 intergenic not near genes chr3R 12036094 intergenic not near genes chr3R 12036143 intergenic not near genes chr3R_4_12035001 chr3R_12035001 RAL-256 912 chr3R 12080864 12080898 chr3R 12080941 12080975 7 77 2.5 2.0 2.2 2.2 111 chr3R 12080864 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080975 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-256 913 chr3R 12093505 12093543 chr3R 12093746 12093784 8 237 1.0 3.0 2.0 2.7 279 chr3R 12093505 intergenic not near genes chr3R 12093644 intergenic not near genes chr3R 12093784 intergenic not near genes chr3R_8_12090001 chr3R_12090001 RAL-256 914 chr3R 12305597 12305618 chr3R 12305687 12305707 6 89 0.5 4.5 2.5 1.7 110 chr3R 12305597 intergenic not near genes chr3R 12305652 intergenic not near genes chr3R 12305707 intergenic not near genes chr3R_6_12305001 chr3R_12305001 RAL-256 915 chr3R 12369207 12369225 chr3R 12369330 12369349 4 122 4.0 3.0 3.5 0.9 142 chr3R 12369207 5` UTR GstD1 - chr3R 12369278 intergenic GstD1 - chr3R 12369349 intergenic GstD1 - chr3R_4_12365001 chr3R_12365001 RAL-256 916 chr3R 12720729 12720759 chr3R 12720898 12720900 6 165 1.5 2.0 1.8 2.1 171 chr3R 12720729 intron Men - chr3R 12720814 intron Men - chr3R 12720900 intron Men - chr3R_6_12720001 chr3R_12720001 RAL-256 917 chr3R 12735803 12735832 chr3R 12735898 12735930 9 95 1.5 2.0 1.8 3.2 127 chr3R 12735803 intergenic not near genes chr3R 12735866 intergenic not near genes chr3R 12735930 intergenic not near genes chr3R_9_12735001 chr3R_12735001 RAL-256 918 chr3R 12766407 12766427 chr3R 12766491 12766510 4 84 3.5 1.5 2.5 1.1 103 chr3R 12766407 intron beat-Vc - chr3R 12766458 intron beat-Vc - chr3R 12766510 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-256 919 chr3R 12819036 12819048 chr3R 12819119 12819131 4 83 4.0 2.0 3.0 1.0 95 chr3R 12819036 intergenic not near genes chr3R 12819084 intergenic not near genes chr3R 12819131 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-256 920 chr3R 12825834 12825849 chr3R 12825910 12825929 7 78 4.5 4.0 4.2 1.3 95 chr3R 12825834 intergenic not near genes chr3R 12825882 intergenic not near genes chr3R 12825929 intergenic not near genes chr3R_7_12825001 chr3R_12825001 RAL-256 921 chr3R 12866487 12866514 chr3R 12866638 12866665 4 151 4.5 1.5 3.0 1.0 178 chr3R 12866487 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866665 intergenic not near genes chr3R_4_12865001 chr3R_12865001 RAL-256 922 chr3R 12920161 12920174 chr3R 12925359 12925367 copia 4 5199 3.0 2.0 2.5 1.1 5206 chr3R 12920161 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925367 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-256 923 chr3R 12947292 12947314 chr3R 12947452 12947464 4 158 0.5 1.5 1.0 2.0 172 chr3R 12947292 intergenic not near genes chr3R 12947378 intergenic not near genes chr3R 12947464 intergenic not near genes chr3R_4_12945001 chr3R_12945001 RAL-256 924 chr3R 12972561 12972584 chr3R 12972700 12972723 5 139 0.0 0.5 0.2 4.2 162 chr3R 12972561 intron CG7381 - chr3R 12972642 intron CG7381 - chr3R 12972723 intron CG7381 - chr3R_5_12970001 chr3R_12970001 RAL-256 925 chr3R 13120773 13120796 chr3R 13120850 13120869 10 74 2.0 2.0 2.0 3.3 96 chr3R 13120773 intron timeout + chr3R 13120821 intron timeout + chr3R 13120869 intron timeout + chr3R_10_13120001 chr3R_13120001 RAL-256 926 chr3R 13135826 13135856 chr3R 13138001 13138031 pogo 6 2175 1.5 1.0 1.2 2.7 2205 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138031 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 RAL-256 927 chr3R 13143049 13143066 chr3R 13148615 13148642 mdg3 6 5568 0.5 7.0 3.8 1.2 5593 chr3R 13143049 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145846 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-256 928 chr3R 13356092 13356115 chr3R 13356177 13356199 6 85 0.0 2.0 1.0 3.0 107 chr3R 13356092 intergenic not near genes chr3R 13356146 intergenic not near genes chr3R 13356199 intergenic not near genes chr3R_6_13355001 chr3R_13355001 RAL-256 929 chr3R 13525180 13525215 chr3R 13525282 13525317 4 97 0.0 2.5 1.2 1.8 137 chr3R 13525180 intergenic not near genes chr3R 13525248 intergenic not near genes chr3R 13525317 intergenic not near genes chr3R_4_13525001 chr3R_13525001 RAL-256 930 chr3R 13603062 13603074 chr3R 13603153 13603163 4 90 2.5 1.0 1.8 1.4 101 chr3R 13603062 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603163 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-256 931 chr3R 13617684 13617704 chr3R 13617790 13617809 4 106 2.0 0.0 1.0 2.0 125 chr3R 13617684 intergenic CR45680 - chr3R 13617746 intergenic CR45680 - chr3R 13617809 3` UTR CR45680 - chr3R_4_13615001 chr3R_13615001 RAL-256 932 chr3R 13693028 13693028 chr3R 21907534 21907536 13 8214507 4.5 17.0 10.8 1.1 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_13_17800001 chr3R_17800001 RAL-256 933 chr3R 13700143 13700169 chr3R 13700220 13700243 11 77 2.0 3.0 2.5 3.1 100 chr3R 13700143 5` UTR f-cup - chr3R 13700193 intron f-cup - chr3R 13700243 intron f-cup - chr3R_11_13700001 chr3R_13700001 RAL-256 934 chr3R 13808687 13808714 chr3R 13809162 13809176 7 470 3.5 4.0 3.8 1.5 489 chr3R 13808687 intergenic not near genes chr3R 13808932 intergenic not near genes chr3R 13809176 intergenic not near genes chr3R_7_13805001 chr3R_13805001 RAL-256 935 chr3R 13857613 13857640 chr3R 13857696 13857726 5 85 2.0 4.0 3.0 1.2 113 chr3R 13857613 intergenic not near genes chr3R 13857670 intergenic not near genes chr3R 13857726 intergenic not near genes chr3R_5_13855001 chr3R_13855001 RAL-256 936 chr3R 13863680 13863712 chr3R 13863767 13863797 7 87 0.5 1.0 0.8 3.9 117 chr3R 13863680 intergenic not near genes chr3R 13863738 intergenic not near genes chr3R 13863797 intergenic not near genes chr3R_7_13860001 chr3R_13860001 RAL-256 937 chr3R 13880559 13880575 chr3R 13880674 13880696 6 119 2.5 4.5 3.5 1.3 137 chr3R 13880559 intergenic not near genes chr3R 13880628 intergenic not near genes chr3R 13880696 intergenic not near genes chr3R_6_13880001 chr3R_13880001 RAL-256 938 chr3R 14067142 14067148 chr3R 14067221 14067227 6 79 4.5 1.0 2.8 1.6 85 chr3R 14067142 exon foxo + chr3R 14067184 intron foxo + chr3R 14067227 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-256 939 chr3R 14117436 14117469 chr3R 14117512 14117545 4 76 1.0 1.0 1.0 2.0 109 chr3R 14117436 intron Kif19A - chr3R 14117490 intron Kif19A - chr3R 14117545 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-256 940 chr3R 14167783 14167813 chr3R 14167852 14167889 12 74 4.0 4.0 4.0 2.4 106 chr3R 14167783 3` UTR Dop1R1 - chr3R 14167836 3` UTR Dop1R1 - chr3R 14167889 3` UTR Dop1R1 - chr3R_12_14165001 chr3R_14165001 RAL-256 941 chr3R 14612445 14612459 chr3R 14612564 14612579 4 120 2.0 0.0 1.0 2.0 134 chr3R 14612445 intron CG14853 + chr3R 14612512 intron CG14853 + chr3R 14612579 intron CG14853 + chr3R_4_14610001 chr3R_14610001 RAL-256 942 chr3R 14704392 14704411 chr3R 14704469 14704474 6 74 1.0 2.0 1.5 2.4 82 chr3R 14704392 intron kibra - chr3R 14704433 intron kibra - chr3R 14704474 intron kibra - chr3R_6_14700001 chr3R_14700001 RAL-256 943 chr3R 14779069 14779085 chr3R 14779147 14779165 4 79 0.5 2.0 1.2 1.8 96 chr3R 14779069 intron jvl + chr3R 14779117 intron jvl + chr3R 14779165 intron jvl + chr3R_4_14775001 chr3R_14775001 RAL-256 944 chr3R 14806722 14806751 chr3R 14806831 14806860 5 108 2.0 2.0 2.0 1.7 138 chr3R 14806722 3` UTR btsz - chr3R 14806791 3` UTR btsz - chr3R 14806860 3` UTR btsz - chr3R_5_14805001 chr3R_14805001 RAL-256 945 chr3R 14869866 14869892 chr3R 14869957 14869983 9 91 0.5 4.0 2.2 2.8 117 chr3R 14869866 intron btsz - chr3R 14869924 intron btsz - chr3R 14869983 intron btsz - chr3R_9_14865001 chr3R_14865001 RAL-256 946 chr3R 14898477 14898504 chr3R 14898597 14898624 4 120 1.0 0.5 0.8 2.2 147 chr3R 14898477 intergenic Nup93-2 -,CG3817 + chr3R 14898550 intergenic Nup93-2 -,CG3817 + chr3R 14898624 intergenic CG3817 +,Nup93-2 - chr3R_4_14895001 chr3R_14895001 RAL-256 947 chr3R 14923730 14923740 chr3R 14923807 14923817 4 77 3.0 7.0 5.0 0.7 87 chr3R 14923730 3` UTR CR45598 - chr3R 14923774 intergenic CR45598 - chr3R 14923817 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-256 948 chr3R 15037017 15037031 chr3R 15037100 15037115 4 84 5.0 3.5 4.2 0.8 98 chr3R 15037017 intergenic RpL10Aa + chr3R 15037066 intergenic RpL10Aa + chr3R 15037115 intergenic RpL10Aa + chr3R_4_15035001 chr3R_15035001 RAL-256 949 chr3R 15132060 15132081 chr3R 15135120 15135141 Juan 4 3060 4.5 4.0 4.2 0.8 3081 chr3R 15132060 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-256 950 chr3R 15286984 15286988 chr3R 21907534 21907536 10 6620548 9.5 17.0 13.2 0.7 6620552 chr3R 15286984 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_10_18595001 chr3R_18595001 RAL-256 951 chr3R 15566434 15566447 chr3R 15566518 15566531 4 84 1.5 5.0 3.2 1.0 97 chr3R 15566434 intergenic not near genes chr3R 15566482 intergenic not near genes chr3R 15566531 intergenic not near genes chr3R_4_15565001 chr3R_15565001 RAL-256 952 chr3R 15594660 15594671 chr3R 15594743 15594754 4 83 0.0 2.5 1.2 1.8 94 chr3R 15594660 intergenic not near genes chr3R 15594707 intergenic not near genes chr3R 15594754 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-256 953 chr3R 15601175 15601194 chr3R 15608697 15608716 412 10 7521 4.0 5.5 4.8 1.7 7541 chr3R 15601175 intergenic not near genes chr3R 15604946 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-256 954 chr3R 15608792 15608819 chr3R 15609020 15609048 9 229 3.5 2.5 3.0 2.2 256 chr3R 15608792 intergenic not near genes chr3R 15608920 intergenic not near genes chr3R 15609048 intergenic not near genes chr3R_9_15605001 chr3R_15605001 RAL-256 955 chr3R 15618750 15618760 chr3R 15626224 15626234 blood 6 7473 0.0 3.0 1.5 2.4 7484 chr3R 15618750 intergenic not near genes chr3R 15622492 intergenic not near genes chr3R 15626234 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-256 956 chr3R 15691180 15691330 chr3R 15691285 15691417 4 92 0.0 0.0 0.0 4.0 237 chr3R 15691180 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691417 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-256 957 chr3R 15792950 15792982 chr3R 15793034 15793061 11 82 0.5 3.0 1.8 3.9 111 chr3R 15792950 intron Acyp2 + chr3R 15793006 intron Acyp2 + chr3R 15793061 exon Acyp2 + chr3R_11_15790001 chr3R_15790001 RAL-256 958 chr3R 15892652 15892684 chr3R 15892731 15892765 6 76 3.5 0.5 2.0 2.0 113 chr3R 15892652 intron CG14877 - chr3R 15892708 intron CG14877 - chr3R 15892765 intron CG14877 - chr3R_6_15890001 chr3R_15890001 RAL-256 959 chr3R 16023860 16023890 chr3R 16023937 16023953 8 75 0.0 2.5 1.2 3.6 93 chr3R 16023860 intergenic not near genes chr3R 16023906 intergenic not near genes chr3R 16023953 intergenic not near genes chr3R_8_16020001 chr3R_16020001 RAL-256 960 chr3R 16110949 16110963 chr3R 16111026 16111040 6 76 3.5 10.0 6.8 0.8 91 chr3R 16110949 intergenic not near genes chr3R 16110994 intergenic not near genes chr3R 16111040 intergenic not near genes chr3R_6_16110001 chr3R_16110001 RAL-256 961 chr3R 16547159 16547189 chr3R 16547254 16547284 5 95 2.0 2.5 2.2 1.6 125 chr3R 16547159 intron CG42342 + chr3R 16547222 intron CG42342 + chr3R 16547284 intron CG42342 + chr3R_5_16545001 chr3R_16545001 RAL-256 962 chr3R 16756320 16756353 chr3R 16762511 16762544 diver 10 6189 1.5 1.5 1.5 4.0 6224 chr3R 16756320 intron bxd - chr3R 16759432 intron bxd - chr3R 16762544 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-256 963 chr3R 16860334 16860367 chr3R 16860412 16860445 5 78 1.5 0.0 0.8 2.8 111 chr3R 16860334 intron iab-8 - chr3R 16860390 intron iab-8 - chr3R 16860445 intron iab-8 - chr3R_5_16860001 chr3R_16860001 RAL-256 964 chr3R 16902684 16902691 chr3R 16902758 16902774 5 81 5.0 3.0 4.0 1.0 90 chr3R 16902684 intron iab-8 - chr3R 16902729 intron iab-8 - chr3R 16902774 intron iab-8 - chr3R_5_16900001 chr3R_16900001 RAL-256 965 chr3R 17065570 17065596 chr3R 17065843 17065870 10 270 2.0 0.5 1.2 4.5 300 chr3R 17065570 intron Dad + chr3R 17065720 intron Dad + chr3R 17065870 intron Dad + chr3R_10_17065001 chr3R_17065001 RAL-256 966 chr3R 17114409 17114431 chr3R 17114489 17114511 7 80 0.5 3.5 2.0 2.3 102 chr3R 17114409 intron cher - chr3R 17114460 intron cher - chr3R 17114511 intron cher - chr3R_7_17110001 chr3R_17110001 RAL-256 967 chr3R 17294686 17294696 chr3R 17295111 17295124 BS 6 427 2.5 3.5 3.0 1.5 438 chr3R 17294686 intergenic not near genes chr3R 17294905 intergenic not near genes chr3R 17295124 intergenic not near genes chr3R_6_17290001 chr3R_17290001 RAL-256 968 chr3R 17335168 17335186 chr3R 17335244 17335262 5 74 2.5 1.5 2.0 1.7 94 chr3R 17335168 intron beat-IIa - chr3R 17335215 intron beat-IIa - chr3R 17335262 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-256 969 chr3R 17346247 17346247 chr3R 21907535 21907536 5 4561288 14.0 17.0 15.5 0.3 4561289 chr3R 17346247 intron beat-IIa - chr3R 19626892 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_5_19625001 chr3R_19625001 RAL-256 970 chr3R 17346694 17346708 chr3R 17348257 17348271 F-element 5 1562 1.0 2.5 1.8 1.8 1577 chr3R 17346694 intron beat-IIa - chr3R 17347482 intron beat-IIa - chr3R 17348271 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-256 971 chr3R 17382665 17382683 chr3R 17382951 17382967 5 286 4.5 2.5 3.5 1.1 302 chr3R 17382665 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R 17382816 intron,intron Brf -,lute + chr3R 17382967 intron,intron Brf -,lute + chr3R_5_17380001 chr3R_17380001 RAL-256 972 chr3R 17471809 17471825 chr3R 17472066 17472082 4 257 2.5 2.5 2.5 1.1 273 chr3R 17471809 intergenic not near genes chr3R 17471946 intergenic not near genes chr3R 17472082 intergenic not near genes chr3R_4_17470001 chr3R_17470001 RAL-256 973 chr3R 17678366 17678403 chr3R 17678459 17678495 6 92 0.0 3.0 1.5 2.4 129 chr3R 17678366 intron alt - chr3R 17678430 intron alt - chr3R 17678495 intron alt - chr3R_6_17675001 chr3R_17675001 RAL-256 974 chr3R 17925865 17925889 chr3R 17927322 17927356 hobo 7 1465 4.0 7.5 5.8 1.0 1491 chr3R 17925865 intron cpo + chr3R 17926610 intron cpo + chr3R 17927356 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-256 975 chr3R 18235223 18235244 chr3R 18235399 18235420 6 173 1.5 1.0 1.2 2.7 197 chr3R 18235223 intergenic not near genes chr3R 18235322 intergenic not near genes chr3R 18235420 intergenic not near genes chr3R_6_18235001 chr3R_18235001 RAL-256 976 chr3R 18299272 18299277 chr3R 18302640 18302662 8 3370 16.5 21.5 19.0 0.4 3390 chr3R 18299272 5` UTR Dlc90F + chr3R 18300967 exon CG18600 - chr3R 18302662 exon CG7126 - chr3R_8_18300001 chr3R_18300001 RAL-256 977 chr3R 18379629 18379654 chr3R 18379935 18379960 8 306 1.0 1.5 1.2 3.6 331 chr3R 18379629 intron CG7675 - chr3R 18379794 intron CG7675 - chr3R 18379960 intron CG7675 - chr3R_8_18375001 chr3R_18375001 RAL-256 978 chr3R 18464323 18464341 chr3R 18464462 18464480 6 139 0.0 3.0 1.5 2.4 157 chr3R 18464323 intron fru - chr3R 18464402 intron fru - chr3R 18464480 intron fru - chr3R_6_18460001 chr3R_18460001 RAL-256 979 chr3R 18491655 18491659 chr3R 18491744 18491748 4 89 4.5 2.5 3.5 0.9 93 chr3R 18491655 intron fru - chr3R 18491702 intron fru - chr3R 18491748 intron fru - chr3R_4_18490001 chr3R_18490001 RAL-256 980 chr3R 18720307 18720334 chr3R 18720403 18720430 6 96 1.0 0.5 0.8 3.3 123 chr3R 18720307 intron Cha + chr3R 18720368 intron Cha + chr3R 18720430 intron Cha + chr3R_6_18720001 chr3R_18720001 RAL-256 981 chr3R 18766781 18766808 chr3R 18766859 18766884 8 77 1.0 1.5 1.2 3.6 103 chr3R 18766781 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_8_18765001 chr3R_18765001 RAL-256 982 chr3R 18785868 18785896 chr3R 18785944 18785973 5 77 5.0 1.0 3.0 1.2 105 chr3R 18785868 intron CG7720 - chr3R 18785920 intron CG7720 - chr3R 18785973 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-256 983 chr3R 18791499 18791509 chr3R 18791578 18791584 5 78 2.5 1.0 1.8 1.8 85 chr3R 18791499 intron CG7720 - chr3R 18791542 intron CG7720 - chr3R 18791584 intron CG7720 - chr3R_5_18790001 chr3R_18790001 RAL-256 984 chr3R 18808486 18808504 chr3R 18808563 18808580 6 74 2.5 7.0 4.8 1.0 94 chr3R 18808486 intron CG18208 - chr3R 18808533 intron CG18208 - chr3R 18808580 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-256 985 chr3R 18812083 18812109 chr3R 18812161 18812187 4 78 2.5 4.0 3.2 1.0 104 chr3R 18812083 intron CG18208 - chr3R 18812135 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-256 986 chr3R 18826715 18826731 chr3R 18826920 18826935 6 204 6.0 4.0 5.0 1.0 220 chr3R 18826715 intron CG18208 - chr3R 18826825 intron CG18208 - chr3R 18826935 intron CG18208 - chr3R_6_18825001 chr3R_18825001 RAL-256 987 chr3R 19013020 19013049 chr3R 19013104 19013133 7 84 1.0 1.0 1.0 3.5 113 chr3R 19013020 intron gukh + chr3R 19013076 intron gukh + chr3R 19013133 intron gukh + chr3R_7_19010001 chr3R_19010001 RAL-256 988 chr3R 19106820 19106845 chr3R 19106910 19106917 6 85 3.5 0.0 1.8 2.1 97 chr3R 19106820 intron CG6040 + chr3R 19106868 intron CG6040 + chr3R 19106917 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-256 989 chr3R 19109229 19109246 chr3R 19109338 19109357 5 111 3.0 4.0 3.5 1.1 128 chr3R 19109229 intron CG6040 + chr3R 19109293 intron CG6040 + chr3R 19109357 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-256 990 chr3R 19140266 19140301 chr3R 19140711 19140749 10 447 4.0 3.0 3.5 2.2 483 chr3R 19140266 3` UTR Ppcs - chr3R 19140508 3` UTR Ppcs - chr3R 19140749 3` UTR Ppcs - chr3R_10_19140001 chr3R_19140001 RAL-256 991 chr3R 19209721 19209749 chr3R 19209963 19209992 9 242 2.0 1.5 1.8 3.2 271 chr3R 19209721 intergenic not near genes chr3R 19209856 intergenic not near genes chr3R 19209992 intergenic not near genes chr3R_9_19205001 chr3R_19205001 RAL-256 992 chr3R 19418415 19418429 chr3R 19418507 19418521 4 92 3.0 0.0 1.5 1.6 106 chr3R 19418415 intron CG31221 + chr3R 19418468 intron CG31221 + chr3R 19418521 intron CG31221 + chr3R_4_19415001 chr3R_19415001 RAL-256 993 chr3R 19702335 19702339 chr3R 19702415 19702421 4 81 2.0 2.5 2.2 1.2 86 chr3R 19702335 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702421 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-256 994 chr3R 19793897 19793919 chr3R 19793989 19794005 4 90 3.5 1.0 2.2 1.2 108 chr3R 19793897 intergenic bnl - chr3R 19793951 intergenic bnl - chr3R 19794005 intergenic bnl - chr3R_4_19790001 chr3R_19790001 RAL-256 995 chr3R 19798690 19798714 chr3R 19798832 19798858 8 142 4.5 2.0 3.2 1.9 168 chr3R 19798690 intron bnl - chr3R 19798774 intron bnl - chr3R 19798858 intron bnl - chr3R_8_19795001 chr3R_19795001 RAL-256 996 chr3R 19994078 19994105 chr3R 19994230 19994257 5 147 5.0 4.0 4.5 0.9 179 chr3R 19994078 intron Hs6st - chr3R 19994168 intron Hs6st - chr3R 19994257 intron Hs6st - chr3R_5_19990001 chr3R_19990001 RAL-256 997 chr3R 20060631 20060654 chr3R 20060714 20060737 6 83 4.0 0.5 2.2 1.9 106 chr3R 20060631 intergenic not near genes chr3R 20060684 intergenic not near genes chr3R 20060737 intergenic not near genes chr3R_6_20060001 chr3R_20060001 RAL-256 998 chr3R 20066116 20066129 chr3R 20066306 20066319 4 190 2.5 0.5 1.5 1.6 203 chr3R 20066116 intergenic not near genes chr3R 20066218 intergenic not near genes chr3R 20066319 intergenic not near genes chr3R_4_20065001 chr3R_20065001 RAL-256 999 chr3R 20156695 20156715 chr3R 20165865 20165885 roo 6 9170 1.0 3.0 2.0 2.0 9190 chr3R 20156695 intergenic not near genes chr3R 20161290 intergenic not near genes chr3R 20165885 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-256 1000 chr3R 20506600 20506610 chr3R 20507403 20507413 BS 5 803 2.0 3.5 2.8 1.3 813 chr3R 20506600 intergenic Or92a + chr3R 20507006 intergenic CG4288 - chr3R 20507413 3` UTR CG4288 - chr3R_5_20505001 chr3R_20505001 RAL-256 1001 chr3R 20722851 20722886 chr3R 20722978 20723013 10 126 0.5 1.5 1.0 5.0 162 chr3R 20722851 intergenic not near genes chr3R 20722932 intergenic not near genes chr3R 20723013 intergenic not near genes chr3R_10_20720001 chr3R_20720001 RAL-256 1002 chr3R 20787438 20787457 chr3R 20787529 20787548 5 90 0.5 2.0 1.2 2.3 110 chr3R 20787438 intron Syp + chr3R 20787493 intron Syp + chr3R 20787548 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-256 1003 chr3R 20938909 20938927 chr3R 20938996 20939003 5 84 4.0 3.5 3.8 1.0 94 chr3R 20938909 intron CG31191 - chr3R 20938956 intron CG31191 - chr3R 20939003 intron CG31191 - chr3R_5_20935001 chr3R_20935001 RAL-256 1004 chr3R 20942812 20942843 chr3R 20942888 20942919 8 76 0.5 1.5 1.0 4.0 107 chr3R 20942812 intron CG31191 - chr3R 20942866 intron CG31191 - chr3R 20942919 intron CG31191 - chr3R_8_20940001 chr3R_20940001 RAL-256 1005 chr3R 21141675 21141700 chr3R 21150156 21150181 Tirant 6 8480 4.0 2.5 3.2 1.4 8506 chr3R 21141675 intron SNF4Agamma + chr3R 21145928 intron SNF4Agamma + chr3R 21150181 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-256 1006 chr3R 21154554 21154581 chr3R 21154758 21154795 6 213 2.5 0.0 1.2 2.7 241 chr3R 21154554 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154795 intron SNF4Agamma + chr3R_6_21150001 chr3R_21150001 RAL-256 1007 chr3R 21240454 21240471 chr3R 21240546 21240563 5 92 2.0 2.0 2.0 1.7 109 chr3R 21240454 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240563 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-256 1008 chr3R 21295322 21295346 chr3R 21295419 21295443 5 96 3.5 1.5 2.5 1.4 121 chr3R 21295322 intergenic not near genes chr3R 21295382 intergenic not near genes chr3R 21295443 intergenic not near genes chr3R_5_21295001 chr3R_21295001 RAL-256 1009 chr3R 21518258 21518269 chr3R 21518342 21518353 4 84 0.0 4.0 2.0 1.3 95 chr3R 21518258 intergenic not near genes chr3R 21518306 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-256 1010 chr3R 21761131 21761141 chr3R 21768523 21768531 mdg1 5 7390 6.0 5.0 5.5 0.8 7400 chr3R 21761131 exon CG42335 + chr3R 21764831 intron CG42335 + chr3R 21768531 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-256 1011 chr3R 21761143 21761152 chr3R 21768518 21768518 mdg1 6 7377 3.5 3.5 3.5 1.3 7375 chr3R 21761143 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768518 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-256 1012 chr3R 21790961 21790977 chr3R 21791046 21791062 4 83 4.0 2.0 3.0 1.0 101 chr3R 21790961 intron CASK - chr3R 21791012 intron CASK - chr3R 21791062 intron CASK - chr3R_4_21790001 chr3R_21790001 RAL-256 1013 chr3R 21827313 21827319 chr3R 21829242 21829249 4 1930 18.5 14.5 16.5 0.2 1936 chr3R 21827313 intergenic not near genes chr3R 21828281 intergenic not near genes chr3R 21829249 intergenic not near genes chr3R_4_21825001 chr3R_21825001 RAL-256 1014 chr3R 21827311 21827334 chr3R 21829255 21829267 5 1933 21.0 11.5 16.2 0.3 1956 chr3R 21827311 intergenic not near genes chr3R 21828289 intergenic not near genes chr3R 21829267 intergenic not near genes chr3R_5_21825001 chr3R_21825001 RAL-256 1015 chr3R 17389054 17389054 chr3R 21907534 21907534 6 4518480 14.0 17.0 15.5 0.4 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_6_19645001 chr3R_19645001 RAL-256 1016 chr3R 21907534 21907534 chr3R 28831801 28831802 18 6924268 24.0 22.5 23.2 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-256 1017 chr3R 8339246 8339247 chr3R 21907535 21907535 9 13568289 16.5 17.0 16.8 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-256 1018 chr3R 9620954 9620994 chr3R 21907535 21907535 6 12286573 1.5 17.0 9.2 0.6 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-256 1019 chr3R 21907535 21907535 chr3R 28831801 28831805 37 6924267 24.0 22.5 23.2 1.5 6924270 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-256 1020 chr3R 21907536 21907536 chr3R 28831801 28831803 26 6924266 24.0 22.5 23.2 1.1 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-256 1021 chr3R 21983139 21983168 chr3R 21983218 21983236 6 78 3.0 0.5 1.8 2.1 97 chr3R 21983139 intron Eip93F + chr3R 21983188 intron Eip93F + chr3R 21983236 intron Eip93F + chr3R_6_21980001 chr3R_21980001 RAL-256 1022 chr3R 22155898 22155924 chr3R 22156122 22156148 6 224 2.5 1.0 1.8 2.1 250 chr3R 22155898 intron SKIP + chr3R 22156023 intron SKIP + chr3R 22156148 intron SKIP + chr3R_6_22155001 chr3R_22155001 RAL-256 1023 chr3R 22234702 22234715 chr3R 22236021 22236034 pogo 5 1319 1.0 2.0 1.5 2.0 1332 chr3R 22234702 intron SKIP + chr3R 22235368 intron SKIP + chr3R 22236034 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-256 1024 chr3R 22428585 22428609 chr3R 22428661 22428685 5 76 0.5 3.0 1.8 1.8 100 chr3R 22428585 intron CG13847 - chr3R 22428635 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_5_22425001 chr3R_22425001 RAL-256 1025 chr3R 22450542 22450578 chr3R 22453182 22453216 NOF 7 2640 2.5 3.5 3.0 1.8 2674 chr3R 22450542 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-256 1026 chr3R 22642770 22642799 chr3R 22643078 22643094 12 307 2.5 0.5 1.5 4.8 324 chr3R 22642770 intron wake + chr3R 22642932 intron wake + chr3R 22643094 intron wake + chr3R_12_22640001 chr3R_22640001 RAL-256 1027 chr3R 22769092 22769125 chr3R 22769166 22769202 10 76 1.5 3.0 2.2 3.1 110 chr3R 22769092 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769147 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_10_22765001 chr3R_22765001 RAL-256 1028 chr3R 22794505 22794540 chr3R 22794582 22794608 6 75 0.5 1.0 0.8 3.3 103 chr3R 22794505 intergenic CG7029 + chr3R 22794556 intergenic not near genes chr3R 22794608 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-256 1029 chr3R 22797759 22797923 chr3R 22797845 22798019 13 84 0.0 0.0 0.0 13.0 260 chr3R 22797759 intergenic not near genes chr3R 22797889 intergenic not near genes chr3R 22798019 intergenic not near genes chr3R_13_22795001 chr3R_22795001 RAL-256 1030 chr3R 22860154 22860175 chr3R 22860246 22860267 8 92 1.0 3.0 2.0 2.7 113 chr3R 22860154 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860267 intergenic not near genes chr3R_8_22860001 chr3R_22860001 RAL-256 1031 chr3R 22863920 22863925 chr3R 22863997 22864002 5 77 3.5 3.5 3.5 1.1 82 chr3R 22863920 intergenic not near genes chr3R 22863961 intergenic not near genes chr3R 22864002 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-256 1032 chr3R 22880606 22880612 chr3R 22880683 22880689 4 77 4.0 7.5 5.8 0.6 83 chr3R 22880606 intergenic not near genes chr3R 22880648 intergenic not near genes chr3R 22880689 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-256 1033 chr3R 22880933 22880955 chr3R 22881071 22881093 7 138 0.5 0.5 0.5 4.7 160 chr3R 22880933 intergenic not near genes chr3R 22881013 intergenic not near genes chr3R 22881093 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-256 1034 chr3R 22913212 22913228 chr3R 22913287 22913303 8 74 2.0 1.5 1.8 2.9 91 chr3R 22913212 intron klg + chr3R 22913258 intron klg + chr3R 22913303 intron klg + chr3R_8_22910001 chr3R_22910001 RAL-256 1035 chr3R 23073657 23073685 chr3R 23073744 23073774 10 87 2.0 3.5 2.8 2.6 117 chr3R 23073657 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073774 intron CG13830 - chr3R_10_23070001 chr3R_23070001 RAL-256 1036 chr3R 23090413 23090433 chr3R 23090489 23090515 9 81 5.5 2.5 4.0 1.8 102 chr3R 23090413 intron CG13830 - chr3R 23090464 intron CG13830 - chr3R 23090515 intron CG13830 - chr3R_9_23090001 chr3R_23090001 RAL-256 1037 chr3R 23091259 23091281 chr3R 23091344 23091364 7 84 4.0 0.0 2.0 2.3 105 chr3R 23091259 intron CG13830 - chr3R 23091312 intron CG13830 - chr3R 23091364 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-256 1038 chr3R 23114169 23114200 chr3R 23114246 23114278 11 77 1.0 0.0 0.5 7.3 109 chr3R 23114169 3` UTR Rassf - chr3R 23114224 3` UTR Rassf - chr3R 23114278 3` UTR Rassf - chr3R_11_23110001 chr3R_23110001 RAL-256 1039 chr3R 23277350 23277373 chr3R 23277440 23277463 4 90 0.5 1.0 0.8 2.2 113 chr3R 23277350 intron orb - chr3R 23277406 intron orb - chr3R 23277463 intron orb - chr3R_4_23275001 chr3R_23275001 RAL-256 1040 chr3R 23421683 23421703 chr3R 23421783 23421803 13 98 5.0 5.5 5.2 2.1 120 chr3R 23421683 intron CG4374 - chr3R 23421743 intron CG4374 - chr3R 23421803 intron CG4374 - chr3R_13_23420001 chr3R_23420001 RAL-256 1041 chr3R 23421990 23422007 chr3R 23422073 23422092 8 84 1.0 8.5 4.8 1.4 102 chr3R 23421990 intron CG4374 - chr3R 23422041 intron CG4374 - chr3R 23422092 intron CG4374 - chr3R_8_23420001 chr3R_23420001 RAL-256 1042 chr3R 23446276 23446311 chr3R 23446354 23446387 11 77 1.5 1.5 1.5 4.4 111 chr3R 23446276 intron CG4374 - chr3R 23446332 intron CG4374 - chr3R 23446387 intron CG4374 - chr3R_11_23445001 chr3R_23445001 RAL-256 1043 chr3R 23558399 23558426 chr3R 23560180 23560207 Bari1 7 1781 0.5 1.0 0.8 3.9 1808 chr3R 23558399 intron beat-IV + chr3R 23559303 intron beat-IV + chr3R 23560207 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-256 1044 chr3R 23684695 23684728 chr3R 23685180 23685214 roo 13 482 4.0 10.0 7.0 1.6 519 chr3R 23684695 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685214 exon CG18754 + chr3R_13_23680001 chr3R_23680001 RAL-256 1045 chr3R 23688472 23688506 chr3R 23688562 23688571 7 87 1.0 5.0 3.0 1.8 99 chr3R 23688472 intergenic SPE + chr3R 23688522 intergenic SPE +,CG10254 - chr3R 23688571 intergenic SPE +,CG10254 - chr3R_7_23685001 chr3R_23685001 RAL-256 1046 chr3R 23944911 23944936 chr3R 23944996 23945021 4 85 2.5 5.5 4.0 0.8 110 chr3R 23944911 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_4_23940001 chr3R_23940001 RAL-256 1047 chr3R 23949041 23949070 chr3R 23949118 23949147 4 77 0.5 0.5 0.5 2.7 106 chr3R 23949041 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949147 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-256 1048 chr3R 24011671 24011674 chr3R 24011754 24011757 4 83 0.0 1.0 0.5 2.7 86 chr3R 24011671 intron KrT95D - chr3R 24011714 intron KrT95D - chr3R 24011757 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-256 1049 chr3R 24207217 24207245 chr3R 24212292 24212321 flea 5 5073 3.5 3.0 3.2 1.2 5104 chr3R 24207217 intron twin - chr3R 24209769 intron twin - chr3R 24212321 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-256 1050 chr3R 21907535 21907536 chr3R 24389465 24389465 4 2481930 24.0 6.5 15.2 0.2 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-256 1051 chr3R 24441630 24441646 chr3R 24441899 24441913 5 276 3.5 0.5 2.0 1.7 283 chr3R 24441630 intron nAChRalpha1 - chr3R 24441772 intron nAChRalpha1 - chr3R 24441913 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-256 1052 chr3R 24493278 24493297 chr3R 24493507 24493526 BS 4 229 2.0 3.0 2.5 1.1 248 chr3R 24493278 intergenic not near genes chr3R 24493402 intergenic not near genes chr3R 24493526 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-256 1053 chr3R 24605547 24605553 chr3R 24605647 24605652 4 98 7.5 10.0 8.8 0.4 105 chr3R 24605547 intron mld + chr3R 24605600 intron mld + chr3R 24605652 intron mld + chr3R_4_24605001 chr3R_24605001 RAL-256 1054 chr3R 24670182 24670199 chr3R 24670267 24670283 5 84 0.0 1.5 0.8 2.8 101 chr3R 24670182 intron slo + chr3R 24670232 intron slo + chr3R 24670283 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-256 1055 chr3R 24730101 24730118 chr3R 24732470 24732496 Doc 5 2376 1.5 0.0 0.8 2.8 2395 chr3R 24730101 intron tok + chr3R 24731298 intron tok + chr3R 24732496 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-256 1056 chr3R 24789988 24790008 chr3R 24790133 24790153 6 145 2.5 4.0 3.2 1.4 165 chr3R 24789988 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790153 intron Ets96B + chr3R_6_24790001 chr3R_24790001 RAL-256 1057 chr3R 24927138 24927151 chr3R 24931928 24931942 Doc 7 4790 2.5 3.0 2.8 1.8 4804 chr3R 24927138 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931942 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-256 1058 chr3R 24973961 24973982 chr3R 24974022 24974058 6 73 4.5 3.0 3.8 1.2 97 chr3R 24973961 intergenic not near genes chr3R 24974010 intergenic not near genes chr3R 24974058 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-256 1059 chr3R 25004899 25004921 chr3R 25004982 25005004 10 83 0.0 5.5 2.8 2.6 105 chr3R 25004899 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_10_25000001 chr3R_25000001 RAL-256 1060 chr3R 25027543 25027569 chr3R 25027750 25027782 9 212 3.0 1.5 2.2 2.8 239 chr3R 25027543 intron Hr96 + chr3R 25027662 intron Hr96 + chr3R 25027782 intron Hr96 + chr3R_9_25025001 chr3R_25025001 RAL-256 1061 chr3R 25081924 25081944 chr3R 25082110 25082130 6 186 1.5 0.5 1.0 3.0 206 chr3R 25081924 intergenic not near genes chr3R 25082027 intergenic not near genes chr3R 25082130 intergenic not near genes chr3R_6_25080001 chr3R_25080001 RAL-256 1062 chr3R 25436490 25436519 chr3R 25436584 25436595 7 90 1.0 0.5 0.8 3.9 105 chr3R 25436490 intron Fur1 - chr3R 25436542 intron Fur1 - chr3R 25436595 intron Fur1 - chr3R_7_25435001 chr3R_25435001 RAL-256 1063 chr3R 25464496 25464513 chr3R 25464813 25464816 6 314 2.0 1.5 1.8 2.1 320 chr3R 25464496 intron Fur1 - chr3R 25464656 intron Fur1 - chr3R 25464816 intron Fur1 - chr3R_6_25460001 chr3R_25460001 RAL-256 1064 chr3R 25689127 25689164 chr3R 25689235 25689271 14 106 2.0 3.0 2.5 4.0 144 chr3R 25689127 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_14_25685001 chr3R_25685001 RAL-256 1065 chr3R 25754898 25754924 chr3R 25755287 25755316 5 391 0.5 0.5 0.5 3.3 418 chr3R 25754898 intron LpR1 - chr3R 25755107 intron LpR1 - chr3R 25755316 intron LpR1 - chr3R_5_25755001 chr3R_25755001 RAL-256 1066 chr3R 25832690 25832714 chr3R 25841872 25841896 roo 10 9177 5.5 3.5 4.5 1.8 9206 chr3R 25832690 exon alpha4GT2 + chr3R 25837293 intron alpha4GT2 + chr3R 25841896 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-256 1067 chr3R 26122464 26122480 chr3R 26122540 26122556 4 76 3.5 3.5 3.5 0.9 92 chr3R 26122464 intron CG31324 + chr3R 26122510 intron CG31324 + chr3R 26122556 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-256 1068 chr3R 26148696 26148716 chr3R 26148776 26148796 7 80 2.0 3.0 2.5 2.0 100 chr3R 26148696 intergenic not near genes chr3R 26148746 intergenic not near genes chr3R 26148796 intergenic not near genes chr3R_7_26145001 chr3R_26145001 RAL-256 1069 chr3R 26292105 26292136 chr3R 26292185 26292216 5 80 1.5 2.0 1.8 1.8 111 chr3R 26292105 intergenic not near genes chr3R 26292160 intergenic not near genes chr3R 26292216 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-256 1070 chr3R 26301831 26301840 chr3R 26301911 26301921 5 81 1.5 0.0 0.8 2.8 90 chr3R 26301831 intergenic not near genes chr3R 26301876 intergenic not near genes chr3R 26301921 intergenic not near genes chr3R_5_26300001 chr3R_26300001 RAL-256 1071 chr3R 26376330 26376352 chr3R 26385489 26385512 roo 6 9158 4.5 0.5 2.5 1.7 9182 chr3R 26376330 intergenic not near genes chr3R 26380921 intergenic not near genes chr3R 26385512 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-256 1072 chr3R 26482367 26482389 chr3R 26482445 26482467 7 78 4.5 5.0 4.8 1.2 100 chr3R 26482367 intron plum - chr3R 26482417 intron plum - chr3R 26482467 intron plum - chr3R_7_26480001 chr3R_26480001 RAL-256 1073 chr3R 26541012 26541024 chr3R 26541085 26541103 4 78 1.5 0.5 1.0 2.0 91 chr3R 26541012 intron scrib + chr3R 26541058 intron scrib + chr3R 26541103 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-256 1074 chr3R 26587112 26587131 chr3R 26587195 26587228 5 94 1.0 1.5 1.2 2.3 116 chr3R 26587112 intron scrib + chr3R 26587170 intron scrib + chr3R 26587228 intron scrib + chr3R_5_26585001 chr3R_26585001 RAL-256 1075 chr3R 26641648 26641663 chr3R 26641727 26641749 5 85 2.0 5.5 3.8 1.0 101 chr3R 26641648 intergenic not near genes chr3R 26641698 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-256 1076 chr3R 26770258 26770272 chr3R 26770335 26770349 5 77 1.0 3.0 2.0 1.7 91 chr3R 26770258 intergenic CR45563 + chr3R 26770304 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-256 1077 chr3R 26810557 26810586 chr3R 26811042 26811071 roo 5 485 1.5 4.5 3.0 1.2 514 chr3R 26810557 intron Tl + chr3R 26810814 intron Tl + chr3R 26811071 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-256 1078 chr3R 26908029 26908064 chr3R 26908126 26908161 5 96 1.0 2.5 1.8 1.8 132 chr3R 26908029 intron T48 + chr3R 26908095 intron T48 + chr3R 26908161 intron T48 + chr3R_5_26905001 chr3R_26905001 RAL-256 1079 chr3R 27030321 27030334 chr3R 27030610 27030623 11 289 2.5 0.5 1.5 4.4 302 chr3R 27030321 intron RYa-R + chr3R 27030472 intron RYa-R + chr3R 27030623 intron RYa-R + chr3R_11_27030001 chr3R_27030001 RAL-256 1080 chr3R 27140514 27140546 chr3R 27148124 27148154 412 4 7610 2.5 2.0 2.2 1.2 7640 chr3R 27140514 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148154 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-256 1081 chr3R 27207083 27207108 chr3R 27207163 27207182 6 77 1.5 0.5 1.0 3.0 99 chr3R 27207083 intergenic not near genes chr3R 27207132 intergenic not near genes chr3R 27207182 intergenic not near genes chr3R_6_27205001 chr3R_27205001 RAL-256 1082 chr3R 27315994 27316013 chr3R 27316070 27316087 7 76 2.5 3.0 2.8 1.8 93 chr3R 27315994 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316087 exon CG3339 - chr3R_7_27315001 chr3R_27315001 RAL-256 1083 chr3R 27334654 27334690 chr3R 27334740 27334775 14 86 4.5 5.5 5.0 2.3 121 chr3R 27334654 intergenic not near genes chr3R 27334714 intergenic not near genes chr3R 27334775 intergenic not near genes chr3R_14_27330001 chr3R_27330001 RAL-256 1084 chr3R 27342795 27342821 chr3R 27351376 27351402 Tirant 6 8581 2.0 2.0 2.0 2.0 8607 chr3R 27342795 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351402 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-256 1085 chr3R 27435791 27435800 chr3R 27443888 27443896 4 8096 14.5 16.0 15.2 0.2 8105 chr3R 27435791 intron side - chr3R 27439844 intron CG44290 - chr3R 27443896 intergenic not near genes chr3R_4_27435001 chr3R_27435001 RAL-256 1086 chr3R 27456140 27456165 chr3R 27456220 27456235 8 77 2.0 1.5 1.8 2.9 95 chr3R 27456140 intergenic not near genes chr3R 27456188 intergenic not near genes chr3R 27456235 intergenic not near genes chr3R_8_27455001 chr3R_27455001 RAL-256 1087 chr3R 27457861 27457898 chr3R 27457953 27457990 8 92 2.0 1.0 1.5 3.2 129 chr3R 27457861 intergenic not near genes chr3R 27457926 intergenic not near genes chr3R 27457990 intergenic not near genes chr3R_8_27455001 chr3R_27455001 RAL-256 1088 chr3R 27570269 27570300 chr3R 27570354 27570385 7 85 2.5 1.5 2.0 2.3 116 chr3R 27570269 intron wdb - chr3R 27570327 intron wdb - chr3R 27570385 intron wdb - chr3R_7_27570001 chr3R_27570001 RAL-256 1089 chr3R 27574114 27574132 chr3R 27574505 27574523 4 394 2.5 2.0 2.2 1.2 409 chr3R 27574114 intron wdb - chr3R 27574318 intron wdb - chr3R 27574523 intron wdb - chr3R_4_27570001 chr3R_27570001 RAL-256 1090 chr3R 27679945 27679971 chr3R 27680068 27680093 7 122 6.5 3.0 4.8 1.2 148 chr3R 27679945 exon CG12883 + chr3R 27680019 3` UTR CG12883 + chr3R 27680093 3` UTR CG12883 + chr3R_7_27680001 chr3R_27680001 RAL-256 1091 chr3R 27779270 27779280 chr3R 27779348 27779355 5 79 7.0 10.0 8.5 0.5 85 chr3R 27779270 exon CG34353 - chr3R 27779312 intron CG34353 - chr3R 27779355 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-256 1092 chr3R 27787809 27787835 chr3R 27787927 27787959 8 119 0.5 0.5 0.5 5.3 150 chr3R 27787809 intron CG34353 - chr3R 27787884 intron CG34353 - chr3R 27787959 intron CG34353 - chr3R_8_27785001 chr3R_27785001 RAL-256 1093 chr3R 27800694 27800714 chr3R 27800787 27800808 7 92 2.5 3.5 3.0 1.8 114 chr3R 27800694 intron CG34353 - chr3R 27800751 intron CG34353 - chr3R 27800808 intron CG34353 - chr3R_7_27800001 chr3R_27800001 RAL-256 1094 chr3R 27856766 27856779 chr3R 27858249 27858262 hopper2 5 1482 8.5 3.5 6.0 0.7 1496 chr3R 27856766 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858262 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-256 1095 chr3R 27862952 27862983 chr3R 27868257 27868288 Transpac 8 5303 3.5 0.5 2.0 2.7 5336 chr3R 27862952 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-256 1096 chr3R 27875713 27875728 chr3R 27882768 27882783 297 6 7055 2.5 3.5 3.0 1.5 7070 chr3R 27875713 intron CG34353 - chr3R 27879248 intron CG34353 - chr3R 27882783 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-256 1097 chr3R 27975998 27976031 chr3R 27976148 27976181 7 150 2.5 3.0 2.8 1.8 183 chr3R 27975998 intron betaTub97EF - chr3R 27976090 intron betaTub97EF - chr3R 27976181 intron betaTub97EF - chr3R_7_27975001 chr3R_27975001 RAL-256 1098 chr3R 28253338 28253369 chr3R 28255848 28255879 jockey 8 2509 3.0 3.5 3.2 1.9 2541 chr3R 28253338 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-256 1099 chr3R 28352515 28352544 chr3R 28352855 28352884 14 340 2.5 7.5 5.0 2.3 369 chr3R 28352515 exon Or98b + chr3R 28352700 exon Or98b + chr3R 28352884 exon Or98b + chr3R_14_28350001 chr3R_28350001 RAL-256 1100 chr3R 28407705 28407739 chr3R 28407790 28407822 12 85 1.0 4.5 2.8 3.2 117 chr3R 28407705 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407822 intergenic not near genes chr3R_12_28405001 chr3R_28405001 RAL-256 1101 chr3R 28410985 28411013 chr3R 28411076 28411105 6 92 0.5 2.0 1.2 2.7 120 chr3R 28410985 intergenic not near genes chr3R 28411045 intergenic not near genes chr3R 28411105 intergenic not near genes chr3R_6_28410001 chr3R_28410001 RAL-256 1102 chr3R 28421656 28421688 chr3R 28421744 28421769 12 85 3.5 3.5 3.5 2.7 113 chr3R 28421656 intron beat-VI + chr3R 28421712 intron beat-VI + chr3R 28421769 intron beat-VI + chr3R_12_28420001 chr3R_28420001 RAL-256 1103 chr3R 28478432 28478443 chr3R 28478499 28478524 4 77 2.0 1.5 1.8 1.4 92 chr3R 28478432 intergenic not near genes chr3R 28478478 intergenic not near genes chr3R 28478524 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-256 1104 chr3R 28479151 28479165 chr3R 28479234 28479248 8 83 1.0 1.0 1.0 4.0 97 chr3R 28479151 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479248 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-256 1105 chr3R 28484353 28484374 chr3R 28486270 28486291 24 1918 23.0 40.0 31.5 0.7 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_24_28485001 chr3R_28485001 RAL-256 1106 chr3R 28742489 28742512 chr3R 28742564 28742587 9 76 2.5 1.5 2.0 3.0 98 chr3R 28742489 intron AstA-R2 - chr3R 28742538 intron AstA-R2 - chr3R 28742587 intron AstA-R2 - chr3R_9_28740001 chr3R_28740001 RAL-256 1107 chr3R 28758287 28758304 chr3R 28763904 28763921 roo 5 5617 2.0 0.5 1.2 2.3 5634 chr3R 28758287 intergenic aqrs - chr3R 28761104 intergenic not near genes chr3R 28763921 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-256 1108 chr3R 28775020 28775037 chr3R 28775159 28775169 5 136 4.5 3.0 3.8 1.0 149 chr3R 28775020 intergenic not near genes chr3R 28775094 intergenic not near genes chr3R 28775169 intergenic not near genes chr3R_5_28775001 chr3R_28775001 RAL-256 1109 chr3R 28792874 28792904 chr3R 28797967 28797997 jockey 7 5094 1.5 3.0 2.2 2.2 5123 chr3R 28792874 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-256 1110 chr3R 28805675 28805695 chr3R 28805751 28805773 6 78 0.5 1.5 1.0 3.0 98 chr3R 28805675 intergenic not near genes chr3R 28805724 intergenic not near genes chr3R 28805773 intergenic not near genes chr3R_6_28805001 chr3R_28805001 RAL-256 1111 chr3R 21907534 21907536 chr3R 28831799 28831803 57 6924266 24.0 22.5 23.2 2.4 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_57_25365001 chr3R_25365001 RAL-256 1112 chr3R 28892328 28892365 chr3R 28892404 28892437 16 72 4.0 3.0 3.5 3.6 109 chr3R 28892328 intron Doa + chr3R 28892382 intron Doa + chr3R 28892437 intron Doa + chr3R_16_28890001 chr3R_28890001 RAL-256 1113 chr3R 28964073 28964103 chr3R 28964176 28964206 10 102 5.0 3.5 4.2 1.9 133 chr3R 28964073 intron CG14521 - chr3R 28964140 intron CG14521 - chr3R 28964206 intron CG14521 - chr3R_10_28960001 chr3R_28960001 RAL-256 1114 chr3R 29032746 29032777 chr3R 29032822 29032838 7 71 2.5 2.0 2.2 2.2 92 chr3R 29032746 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032792 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032838 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_7_29030001 chr3R_29030001 RAL-256 1115 chr3R 29079380 29079404 chr3R 29080752 29080776 NOF 4 1372 4.0 3.0 3.5 0.9 1396 chr3R 29079380 intron CG11873 + chr3R 29080078 intron CG11873 + chr3R 29080776 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-256 1116 chr3R 29193638 29193666 chr3R 29194977 29195003 11 1336 22.5 19.0 20.8 0.5 1365 chr3R 29193638 intron CG14509 - chr3R 29194320 intron CG14509 - chr3R 29195003 intergenic CG14509 - chr3R_11_29190001 chr3R_29190001 RAL-256 1117 chr3R 29230828 29230849 chr3R 29230904 29230925 4 75 3.0 6.5 4.8 0.7 97 chr3R 29230828 intron CG15817 + chr3R 29230876 intron CG15817 + chr3R 29230925 intron CG15817 + chr3R_4_29230001 chr3R_29230001 RAL-256 1118 chr3R 29237250 29237271 chr3R 29239269 29239291 5 2020 8.5 5.0 6.8 0.6 2041 chr3R 29237250 exon CG11951 - chr3R 29238270 intron CG11951 - chr3R 29239291 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-256 1119 chr3R 29375988 29376226 chr3R 29376074 29376302 10 83 0.0 3.0 1.5 4.0 314 chr3R 29375988 intergenic not near genes chr3R 29376145 intergenic not near genes chr3R 29376302 intergenic not near genes chr3R_10_29375001 chr3R_29375001 RAL-256 1120 chr3R 29406617 29406644 chr3R 29407903 29407930 jockey 8 1282 3.0 2.5 2.8 2.1 1313 chr3R 29406617 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407930 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-256 1121 chr3R 29449368 29449389 chr3R 29449446 29449467 4 78 1.0 1.0 1.0 2.0 99 chr3R 29449368 intron Ptp99A + chr3R 29449418 intron Ptp99A + chr3R 29449467 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-256 1122 chr3R 29453753 29453786 chr3R 29453829 29453862 7 75 0.0 0.5 0.2 5.8 109 chr3R 29453753 intron Ptp99A + chr3R 29453808 intron Ptp99A + chr3R 29453862 intron Ptp99A + chr3R_7_29450001 chr3R_29450001 RAL-256 1123 chr3R 29472013 29472020 chr3R 29472106 29472113 5 93 3.0 3.0 3.0 1.2 100 chr3R 29472013 intron Ptp99A + chr3R 29472063 intron Ptp99A + chr3R 29472113 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-256 1124 chr3R 29472021 29472033 chr3R 29472105 29472126 5 89 1.5 3.0 2.2 1.6 105 chr3R 29472021 intron Ptp99A + chr3R 29472074 intron Ptp99A + chr3R 29472126 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-256 1125 chr3R 29505910 29505924 chr3R 29505987 29506001 5 76 1.5 3.0 2.2 1.6 91 chr3R 29505910 intergenic not near genes chr3R 29505956 intergenic not near genes chr3R 29506001 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-256 1126 chr3R 29518308 29518328 chr3R 29518387 29518405 5 78 3.5 2.5 3.0 1.2 97 chr3R 29518308 intergenic not near genes chr3R 29518356 intergenic not near genes chr3R 29518405 intergenic not near genes chr3R_5_29515001 chr3R_29515001 RAL-256 1127 chr3R 29606940 29606964 chr3R 29607018 29607042 5 78 1.0 1.0 1.0 2.5 102 chr3R 29606940 intron alph + chr3R 29606991 intron alph + chr3R 29607042 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-256 1128 chr3R 29758938 29758971 chr3R 29759016 29759049 8 78 1.0 2.5 1.8 2.9 111 chr3R 29758938 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-256 1129 chr3R 29859029 29859059 chr3R 29859953 29859983 4 924 0.5 2.0 1.2 1.8 954 chr3R 29859029 intergenic CG7824 - chr3R 29859506 intergenic not near genes chr3R 29859983 intergenic CG15514 - chr3R_4_29855001 chr3R_29855001 RAL-256 1130 chr3R 30084852 30084883 chr3R 30086319 30086350 hobo 6 1466 3.0 3.0 3.0 1.5 1498 chr3R 30084852 intron sima + chr3R 30085601 intron sima + chr3R 30086350 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-256 1131 chr3R 30088617 30088635 chr3R 30088704 30088721 4 86 0.0 1.0 0.5 2.7 104 chr3R 30088617 intron sima + chr3R 30088669 intron sima + chr3R 30088721 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-256 1132 chr3R 30132831 30132852 chr3R 30132919 30132940 6 88 1.0 3.0 2.0 2.0 109 chr3R 30132831 intergenic Tpi -,CG31029 - chr3R 30132886 intergenic Tpi -,CG31029 - chr3R 30132940 intergenic Tpi - chr3R_6_30130001 chr3R_30130001 RAL-256 1133 chr3R 30181106 30181129 chr3R 30181180 30181206 8 75 7.5 3.0 5.2 1.3 100 chr3R 30181106 3` UTR Bet5 + chr3R 30181156 3` UTR Bet5 + chr3R 30181206 3` UTR Bet5 + chr3R_8_30180001 chr3R_30180001 RAL-256 1134 chr3R 30268244 30268448 chr3R 30268323 30268528 15 80 2.5 1.5 2.0 5.0 284 chr3R 30268244 intergenic not near genes chr3R 30268386 intergenic not near genes chr3R 30268528 intergenic not near genes chr3R_15_30265001 chr3R_30265001 RAL-256 1135 chr3R 30317330 30317358 chr3R 30324922 30324948 roo 8 7592 0.5 1.5 1.0 4.0 7618 chr3R 30317330 intron hdc + chr3R 30321139 intron hdc + chr3R 30324948 intron hdc + chr3R_8_30320001 chr3R_30320001 RAL-256 1136 chr3R 30330492 30330518 chr3R 30330572 30330576 7 72 5.5 1.5 3.5 1.6 84 chr3R 30330492 intron hdc + chr3R 30330534 intron hdc + chr3R 30330576 intron hdc + chr3R_7_30330001 chr3R_30330001 RAL-256 1137 chr3R 30438436 30438463 chr3R 30438511 30438540 8 76 1.5 2.5 2.0 2.7 104 chr3R 30438436 intron CG15537 - chr3R 30438488 intron CG15537 - chr3R 30438540 intron CG15537 - chr3R_8_30435001 chr3R_30435001 RAL-256 1138 chr3R 30448194 30448224 chr3R 30448272 30448303 6 79 1.5 3.0 2.2 1.9 109 chr3R 30448194 intron aralar1 - chr3R 30448248 intron aralar1 - chr3R 30448303 intron aralar1 - chr3R_6_30445001 chr3R_30445001 RAL-256 1139 chr3R 30456410 30456425 chr3R 30456491 30456506 4 81 1.0 1.5 1.2 1.8 96 chr3R 30456410 intergenic CG2224 - chr3R 30456458 3` UTR CG2224 - chr3R 30456506 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-256 1140 chr3R 30466704 30466726 chr3R 30466782 30466806 9 80 2.0 4.0 3.0 2.2 102 chr3R 30466704 intron PH4alphaEFB + chr3R 30466755 intron PH4alphaEFB + chr3R 30466806 intron PH4alphaEFB + chr3R_9_30465001 chr3R_30465001 RAL-256 1141 chr3R 30480474 30480510 chr3R 30482942 30482978 jockey 9 2467 4.0 4.0 4.0 1.8 2504 chr3R 30480474 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-256 1142 chr3R 30485043 30485067 chr3R 30485119 30485142 7 76 1.0 1.5 1.2 3.2 99 chr3R 30485043 intron PH4alphaEFB + chr3R 30485092 intron PH4alphaEFB + chr3R 30485142 intron PH4alphaEFB + chr3R_7_30485001 chr3R_30485001 RAL-256 1143 chr3R 30549012 30549033 chr3R 30549103 30549125 4 92 2.0 0.5 1.2 1.8 113 chr3R 30549012 intron tmod + chr3R 30549068 intron tmod + chr3R 30549125 intron tmod + chr3R_4_30545001 chr3R_30545001 RAL-256 1144 chr3R 30568329 30568342 chr3R 30568434 30568451 8 106 2.5 3.5 3.0 2.0 122 chr3R 30568329 intron tmod + chr3R 30568390 intron tmod + chr3R 30568451 intron tmod + chr3R_8_30565001 chr3R_30565001 RAL-256 1145 chr3R 30568348 30568355 chr3R 30568432 30568462 4 98 0.5 3.0 1.8 1.4 114 chr3R 30568348 intron tmod + chr3R 30568405 intron tmod + chr3R 30568462 intron tmod + chr3R_4_30565001 chr3R_30565001 RAL-256 1146 chr3R 30571706 30571712 chr3R 30571786 30571792 6 80 0.0 2.5 1.2 2.7 86 chr3R 30571706 intron tmod + chr3R 30571749 intron tmod + chr3R 30571792 intron tmod + chr3R_6_30570001 chr3R_30570001 RAL-256 1147 chr3R 30620932 30620948 chr3R 30621087 30621103 4 155 0.5 1.0 0.8 2.2 171 chr3R 30620932 intron CG44954 - chr3R 30621018 intron CG44954 - chr3R 30621103 intron CG44954 - chr3R_4_30620001 chr3R_30620001 RAL-256 1148 chr3R 30627622 30627638 chr3R 30627690 30627707 10 74 1.5 3.5 2.5 2.9 85 chr3R 30627622 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627707 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-256 1149 chr3R 30679522 30679551 chr3R 30686989 30687019 blood 10 7468 1.0 3.0 2.0 3.3 7497 chr3R 30679522 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_10_30680001 chr3R_30680001 RAL-256 1150 chr3R 30690162 30690191 chr3R 30690244 30690275 10 83 2.0 2.5 2.2 3.1 113 chr3R 30690162 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690275 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-256 1151 chr3R 30718652 30718676 chr3R 30718734 30718758 6 82 3.0 2.5 2.8 1.6 106 chr3R 30718652 intergenic not near genes chr3R 30718705 intergenic not near genes chr3R 30718758 intergenic not near genes chr3R_6_30715001 chr3R_30715001 RAL-256 1152 chr3R 30800408 30800427 chr3R 30800494 30800495 8 84 2.5 1.5 2.0 2.7 87 chr3R 30800408 5` UTR wts - chr3R 30800452 5` UTR wts - chr3R 30800495 5` UTR wts - chr3R_8_30800001 chr3R_30800001 RAL-256 1153 chr3R 30833974 30833993 chr3R 30834051 30834070 6 76 2.5 0.0 1.2 2.7 96 chr3R 30833974 intron CG15544 + chr3R 30834022 intron CG15544 + chr3R 30834070 intron CG15544 + chr3R_6_30830001 chr3R_30830001 RAL-256 1154 chr3R 30850240 30850262 chr3R 30850332 30850354 11 92 2.0 0.5 1.2 5.0 114 chr3R 30850240 intergenic not near genes chr3R 30850297 intergenic not near genes chr3R 30850354 intergenic not near genes chr3R_11_30850001 chr3R_30850001 RAL-256 1155 chr3R 30900521 30900555 chr3R 30900600 30900633 12 79 3.5 1.0 2.2 3.8 112 chr3R 30900521 exon Cyp4c3 + chr3R 30900577 3` UTR Cyp4c3 + chr3R 30900633 3` UTR Cyp4c3 + chr3R_12_30900001 chr3R_30900001 RAL-256 1156 chr3R 31029698 31029722 chr3R 31029783 31029802 7 84 2.5 2.0 2.2 2.2 104 chr3R 31029698 intergenic not near genes chr3R 31029750 intergenic not near genes chr3R 31029802 intergenic not near genes chr3R_7_31025001 chr3R_31025001 RAL-256 1157 chr3R 31042109 31042143 chr3R 31042196 31042230 11 87 2.0 2.0 2.0 3.7 121 chr3R 31042109 intron CanA1 + chr3R 31042170 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_11_31040001 chr3R_31040001 RAL-256 1158 chr3R 31069643 31069675 chr3R 31069738 31069758 9 94 1.0 3.0 2.0 3.0 115 chr3R 31069643 intron Sox100B + chr3R 31069700 intron Sox100B + chr3R 31069758 intron Sox100B + chr3R_9_31065001 chr3R_31065001 RAL-256 1159 chr3R 31074221 31074234 chr3R 31081829 31081842 springer 6 7608 3.0 0.0 1.5 2.4 7621 chr3R 31074221 intron Sox100B + chr3R 31078032 intron Sox100B + chr3R 31081842 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-256 1160 chr3R 31093341 31093358 chr3R 31093410 31093437 7 75 2.0 6.5 4.2 1.3 96 chr3R 31093341 intron CG11317 - chr3R 31093389 intron CG11317 - chr3R 31093437 intron CG11317 - chr3R_7_31090001 chr3R_31090001 RAL-256 1161 chr3R 31135041 31135053 chr3R 31135155 31135169 6 116 2.0 0.0 1.0 3.0 128 chr3R 31135041 intron Gycbeta100B + chr3R 31135105 intron Gycbeta100B + chr3R 31135169 intron Gycbeta100B + chr3R_6_31135001 chr3R_31135001 RAL-256 1162 chr3R 31220142 31220167 chr3R 31220601 31220626 6 458 0.0 3.0 1.5 2.4 484 chr3R 31220142 intergenic not near genes chr3R 31220384 intergenic CG12054 + chr3R 31220626 intergenic CG12054 + chr3R_6_31220001 chr3R_31220001 RAL-256 1163 chr3R 31279379 31279405 chr3R 31285569 31285581 diver 5 6187 2.5 4.5 3.5 1.1 6202 chr3R 31279379 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285581 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-256 1164 chr3R 31310071 31310075 chr3R 31310143 31310151 4 74 1.5 6.0 3.8 0.8 80 chr3R 31310071 intergenic not near genes chr3R 31310111 intergenic not near genes chr3R 31310151 intergenic not near genes chr3R_4_31310001 chr3R_31310001 RAL-256 1165 chr3R 31412714 31412741 chr3R 31412807 31412834 5 89 1.0 1.5 1.2 2.3 120 chr3R 31412714 intron Gprk2 + chr3R 31412774 intron Gprk2 + chr3R 31412834 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-256 1166 chr3R 31413088 31413121 chr3R 31418288 31418321 copia 11 5200 2.0 0.0 1.0 5.5 5233 chr3R 31413088 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-256 1167 chr3R 31426879 31426909 chr3R 31426971 31427001 6 90 1.0 0.0 0.5 4.0 122 chr3R 31426879 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427001 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-256 1168 chr3R 31435362 31435391 chr3R 31435514 31435543 5 152 0.5 2.5 1.5 2.0 181 chr3R 31435362 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-256 1169 chr3R 31450759 31450791 chr3R 31450925 31450958 5 167 28.0 31.5 29.8 0.2 199 chr3R 31450759 intron Gprk2 + chr3R 31450858 intron Gprk2 + chr3R 31450958 intron Gprk2 + chr3R_5_31450001 chr3R_31450001 RAL-256 1170 chr3R 31453222 31453248 chr3R 31453300 31453326 10 77 4.5 1.0 2.8 2.6 104 chr3R 31453222 intron Gprk2 + chr3R 31453274 intron Gprk2 + chr3R 31453326 exon Gprk2 + chr3R_10_31450001 chr3R_31450001 RAL-256 1171 chr3R 31477372 31477385 chr3R 31477540 31477552 4 168 3.5 2.0 2.8 1.1 180 chr3R 31477372 intergenic not near genes chr3R 31477462 intergenic not near genes chr3R 31477552 intergenic not near genes chr3R_4_31475001 chr3R_31475001 RAL-256 1172 chr3R 31522801 31522807 chr3R 31522938 31522944 5 137 3.0 3.0 3.0 1.2 143 chr3R 31522801 3` UTR CR45573 - chr3R 31522872 3` UTR CR45573 - chr3R 31522944 3` UTR CR45573 - chr3R_5_31520001 chr3R_31520001 RAL-256 1173 chr3R 31528246 31528269 chr3R 31528443 31528469 7 198 2.0 2.0 2.0 2.3 223 chr3R 31528246 intergenic not near genes chr3R 31528358 intergenic not near genes chr3R 31528469 intergenic not near genes chr3R_7_31525001 chr3R_31525001 RAL-256 1174 chr3R 31539343 31539357 chr3R 31539428 31539442 4 85 1.0 3.0 2.0 1.3 99 chr3R 31539343 intergenic not near genes chr3R 31539392 intergenic not near genes chr3R 31539442 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-256 1175 chr3R 31561787 31561812 chr3R 31561868 31561902 12 89 2.5 2.0 2.2 3.8 115 chr3R 31561787 exon nyo + chr3R 31561844 intron nyo + chr3R 31561902 intron nyo + chr3R_12_31560001 chr3R_31560001 RAL-256 1176 chr3R 31630072 31630085 chr3R 31630177 31630190 5 105 2.5 4.0 3.2 1.2 118 chr3R 31630072 intron kek6 + chr3R 31630131 intron kek6 + chr3R 31630190 intron kek6 + chr3R_5_31630001 chr3R_31630001 RAL-256 1177 chr3R 31691554 31691562 chr3R 31696303 31696328 Doc 4 4761 3.5 6.0 4.8 0.7 4774 chr3R 31691554 intergenic not near genes chr3R 31693941 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-256 1178 chr3R 31854045 31854071 chr3R 31854125 31854150 7 79 1.5 3.5 2.5 2.0 105 chr3R 31854045 intron heph - chr3R 31854098 intron heph - chr3R 31854150 intron heph - chr3R_7_31850001 chr3R_31850001 RAL-256 1179 chr3R 32068375 32068408 chr3R 32069062 32069095 8 688 19.0 10.5 14.8 0.5 720 chr3R 32068375 5` UTR Map205 - chr3R 32068735 intergenic Map205 - chr3R 32069095 intergenic not near genes chr3R_8_32065001 chr3R_32065001 RAL-256 1180 chr4 671603 671636 chr4 680186 680219 Tirant 6 8580 0.5 2.0 1.2 2.7 8616 chr4 671603 intron CG11360 + chr4 675911 intron CG11360 + chr4 680219 intron CG11360 + chr4_6_675001 chr4_675001 RAL-256 1181 chrX 450369 450392 chrX 450448 450470 4 78 0.5 0.0 0.2 3.3 101 chrX 450369 intron CG32816 - chrX 450420 intron CG32816 - chrX 450470 intron CG32816 - chrX_4_450001 chrX_450001 RAL-256 1182 chrX 547649 547662 chrX 547892 547906 5 244 1.0 4.0 2.5 1.4 257 chrX 547649 intron Appl + chrX 547778 intron Appl + chrX 547906 intron Appl + chrX_5_545001 chrX_545001 RAL-256 1183 chrX 551442 551449 chrX 558993 559011 412 4 7559 4.0 3.0 3.5 0.9 7569 chrX 551442 intron Appl + chrX 555226 intron Appl + chrX 559011 intron Appl + chrX_4_555001 chrX_555001 RAL-256 1184 chrX 669761 669792 chrX 670059 670081 5 297 0.5 1.0 0.8 2.8 320 chrX 669761 intergenic not near genes chrX 669921 intergenic not near genes chrX 670081 intergenic not near genes chrX_5_665001 chrX_665001 RAL-256 1185 chrX 806786 806815 chrX 806882 806911 10 96 2.5 2.5 2.5 2.9 125 chrX 806786 intron Sec22 + chrX 806848 intron Sec22 + chrX 806911 intron Sec22 + chrX_10_805001 chrX_805001 RAL-256 1186 chrX 826385 826417 chrX 826546 826573 10 159 3.5 0.5 2.0 3.3 188 chrX 826385 intron CG43867 - chrX 826479 intron CG43867 - chrX 826573 intron CG43867 - chrX_10_825001 chrX_825001 RAL-256 1187 chrX 873864 873894 chrX 874135 874167 9 272 0.5 2.0 1.2 4.1 303 chrX 873864 intron CG43867 - chrX 874016 intron CG43867 - chrX 874167 intron CG43867 - chrX_9_870001 chrX_870001 RAL-256 1188 chrX 906708 906721 chrX 908496 908509 S-element 5 1788 2.5 4.0 3.2 1.2 1801 chrX 906708 intron CG43867 - chrX 907608 intron CG43867 - chrX 908509 intron CG43867 - chrX_5_905001 chrX_905001 RAL-256 1189 chrX 1109706 1109708 chrX 1111413 1111438 8 1710 9.5 22.5 16.0 0.5 1732 chrX 1109706 intron CG3655 - chrX 1110572 intron CG3655 - chrX 1111438 intron CG3655 - chrX_8_1110001 chrX_1110001 RAL-256 1190 chrX 1205530 1205558 chrX 1205611 1205639 4 76 4.5 4.0 4.2 0.8 109 chrX 1205530 intergenic CG11381 + chrX 1205584 intergenic CG11381 + chrX 1205639 intergenic CG11381 + chrX_4_1205001 chrX_1205001 RAL-256 1191 chrX 1302318 1302337 chrX 1302423 1302441 5 105 4.0 1.5 2.8 1.3 123 chrX 1302318 intron DAAM - chrX 1302380 intron DAAM - chrX 1302441 intron DAAM - chrX_5_1300001 chrX_1300001 RAL-256 1192 chrX 1627976 1628001 chrX 1635444 1635467 gtwin 11 7467 3.0 3.0 3.0 2.8 7491 chrX 1627976 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_11_1630001 chrX_1630001 RAL-256 1193 chrX 1903350 1903375 chrX 1903429 1903456 6 81 2.5 2.5 2.5 1.7 106 chrX 1903350 5` UTR CR43864 + chrX 1903403 5` UTR CR43864 + chrX 1903456 5` UTR CR43864 + chrX_6_1900001 chrX_1900001 RAL-256 1194 chrX 1954886 1954912 chrX 1962826 1962834 Stalker2 4 7934 2.5 1.0 1.8 1.4 7948 chrX 1954886 intron Hr4 + chrX 1958860 intron Hr4 + chrX 1962834 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-256 1195 chrX 2146652 2146688 chrX 2146744 2146780 5 89 2.0 3.0 2.5 1.4 128 chrX 2146652 intron Pgd + chrX 2146716 intron Pgd + chrX 2146780 intron Pgd + chrX_5_2145001 chrX_2145001 RAL-256 1196 chrX 2397921 2397927 chrX 2398015 2398020 4 94 5.5 0.0 2.8 1.1 99 chrX 2397921 intergenic not near genes chrX 2397970 intergenic not near genes chrX 2398020 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-256 1197 chrX 2399836 2399864 chrX 2408188 2408216 roo 8 8348 5.0 0.0 2.5 2.3 8380 chrX 2399836 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408216 intergenic not near genes chrX_8_2400001 chrX_2400001 RAL-256 1198 chrX 2559358 2559388 chrX 2559446 2559475 8 88 4.5 1.0 2.8 2.1 117 chrX 2559358 intron Pdfr + chrX 2559416 intron Pdfr + chrX 2559475 intron Pdfr + chrX_8_2555001 chrX_2555001 RAL-256 1199 chrX 2578809 2578840 chrX 2578901 2578932 9 91 1.5 3.0 2.2 2.8 123 chrX 2578809 intergenic Pdfr +,Vha36-3 - chrX 2578870 intergenic Vha36-3 -,Pdfr + chrX 2578932 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-256 1200 chrX 2844896 2844912 chrX 2852306 2852321 mdg1 4 7410 2.0 2.0 2.0 1.3 7425 chrX 2844896 intron kirre + chrX 2848608 intron kirre + chrX 2852321 intron kirre + chrX_4_2845001 chrX_2845001 RAL-256 1201 chrX 2888116 2888147 chrX 2888194 2888225 8 78 2.5 3.5 3.0 2.0 109 chrX 2888116 intron kirre + chrX 2888170 intron kirre + chrX 2888225 intron kirre + chrX_8_2885001 chrX_2885001 RAL-256 1202 chrX 3203474 3203493 chrX 3203663 3203676 8 195 1.5 4.0 2.8 2.1 202 chrX 3203474 intron dnc + chrX 3203575 intron dnc + chrX 3203676 intron dnc + chrX_8_3200001 chrX_3200001 RAL-256 1203 chrX 3271691 3271720 chrX 3271767 3271781 4 72 4.0 1.0 2.5 1.1 90 chrX 3271691 intron dnc + chrX 3271736 intron dnc + chrX 3271781 intron dnc + chrX_4_3270001 chrX_3270001 RAL-256 1204 chrX 3415031 3415048 chrX 3421216 3421233 3S18 4 6185 0.5 2.0 1.2 1.8 6202 chrX 3415031 intron,intron CR44999 +,CG12535 - chrX 3418132 intron,intron CR44999 +,CG12535 - chrX 3421233 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-256 1205 chrX 3459989 3460013 chrX 3460066 3460090 4 77 0.5 0.5 0.5 2.7 101 chrX 3459989 intron,intron CR44999 +,CG16782 - chrX 3460040 intron,5` UTR CR44999 +,CG16782 - chrX 3460090 intron,5` UTR CR44999 +,CG16782 - chrX_4_3460001 chrX_3460001 RAL-256 1206 chrX 3493090 3493114 chrX 3502248 3502273 roo 7 9158 2.0 1.0 1.5 2.8 9183 chrX 3493090 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502273 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-256 1207 chrX 3535411 3535431 chrX 3535502 3535510 5 83 2.0 1.0 1.5 2.0 99 chrX 3535411 intron CG32791 - chrX 3535460 intron CG32791 - chrX 3535510 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-256 1208 chrX 3597552 3597576 chrX 3619718 3619744 roo 12 22168 3.0 0.0 1.5 4.8 22192 chrX 3597552 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-256 1209 chrX 3630545 3630575 chrX 3630621 3630651 11 76 1.0 2.0 1.5 4.4 106 chrX 3630545 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630651 intron AstA-R1 + chrX_11_3630001 chrX_3630001 RAL-256 1210 chrX 3655996 3656020 chrX 3656092 3656117 12 96 3.0 4.0 3.5 2.7 121 chrX 3655996 intron AstA-R1 + chrX 3656056 intron AstA-R1 + chrX 3656117 intron AstA-R1 + chrX_12_3655001 chrX_3655001 RAL-256 1211 chrX 3726760 3726788 chrX 3730157 3730163 NOF 5 3392 1.0 2.5 1.8 1.8 3403 chrX 3726760 intron tlk + chrX 3728462 intron tlk + chrX 3730163 intron tlk + chrX_5_3725001 chrX_3725001 RAL-256 1212 chrX 3890669 3890686 chrX 3890989 3891006 5 320 3.0 2.5 2.8 1.3 337 chrX 3890669 intergenic CG15239 + chrX 3890838 intergenic CG15239 + chrX 3891006 intergenic CG42541 - chrX_5_3890001 chrX_3890001 RAL-256 1213 chrX 4047470 4047491 chrX 4047583 4047588 9 110 4.0 2.0 3.0 2.2 118 chrX 4047470 intergenic CR45482 - chrX 4047529 intergenic CR45482 - chrX 4047588 intergenic CR45482 - chrX_9_4045001 chrX_4045001 RAL-256 1214 chrX 4436457 4436466 chrX 4436533 4436542 4 76 2.5 0.0 1.2 1.8 85 chrX 4436457 intron,intron CR32773 -,bi + chrX 4436500 intron,intron CR32773 -,bi + chrX 4436542 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-256 1215 chrX 4731813 4731831 chrX 4736906 4736924 jockey 4 5093 5.0 2.0 3.5 0.9 5111 chrX 4731813 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736924 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-256 1216 chrX 1562990 1562991 chrX 4805476 4805477 opus 8 3242486 14.5 14.0 14.2 0.5 3242487 chrX 1562990 intron Mur2B - chrX 3184234 intron dnc + chrX 4805477 3` UTR CR45516 - chrX_8_3180001 chrX_3180001 RAL-256 1217 chrX 4827212 4827243 chrX 4827299 4827330 4 87 5.5 2.0 3.8 0.8 118 chrX 4827212 intergenic CG12682 + chrX 4827271 intergenic CG12682 + chrX 4827330 intergenic CG12682 + chrX_4_4825001 chrX_4825001 RAL-256 1218 chrX 4827970 4828002 chrX 4835339 4835357 Stalker4 6 7364 2.0 4.0 3.0 1.5 7387 chrX 4827970 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835357 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-256 1219 chrX 4885777 4885807 chrX 4885869 4885888 10 88 1.0 3.5 2.2 3.1 111 chrX 4885777 intron CG42594 + chrX 4885832 intron CG42594 + chrX 4885888 intron CG42594 + chrX_10_4885001 chrX_4885001 RAL-256 1220 chrX 4965556 4965587 chrX 4965636 4965667 7 78 0.5 2.5 1.5 2.8 111 chrX 4965556 intron CR44833 - chrX 4965612 intron CR44833 - chrX 4965667 intron CR44833 - chrX_7_4965001 chrX_4965001 RAL-256 1221 chrX 5350305 5350315 chrX 5350412 5350424 4 108 1.5 3.5 2.5 1.1 119 chrX 5350305 intron SK + chrX 5350364 intron SK + chrX 5350424 intron SK + chrX_4_5350001 chrX_5350001 RAL-256 1222 chrX 5456595 5456612 chrX 5456704 5456728 4 114 1.0 2.0 1.5 1.6 133 chrX 5456595 intron SPR + chrX 5456662 intron SPR + chrX 5456728 intron SPR + chrX_4_5455001 chrX_5455001 RAL-256 1223 chrX 5883679 5883841 chrX 5883789 5884082 pogo 8 207 2.5 3.5 3.0 2.0 403 chrX 5883679 intron CR45668 - chrX 5883880 intron CR45668 - chrX 5884082 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-256 1224 chrX 5886441 5886477 chrX 5886711 5886747 10 270 2.0 2.5 2.2 3.1 306 chrX 5886441 intron CR45668 - chrX 5886594 intron CR45668 - chrX 5886747 intron CR45668 - chrX_10_5885001 chrX_5885001 RAL-256 1225 chrX 6003288 6003312 chrX 6003369 6003393 4 81 0.0 3.0 1.5 1.6 105 chrX 6003288 intron CR44498 + chrX 6003340 intron CR44498 + chrX 6003393 intron CR44498 + chrX_4_6000001 chrX_6000001 RAL-256 1226 chrX 6314418 6314450 chrX 6314493 6314526 4 76 1.0 1.0 1.0 2.0 108 chrX 6314418 intron CG15894 + chrX 6314472 intron CG15894 + chrX 6314526 intron CG15894 + chrX_4_6310001 chrX_6310001 RAL-256 1227 chrX 6335216 6335239 chrX 6337726 6337749 Tirant 6 2510 0.0 2.0 1.0 3.0 2533 chrX 6335216 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337749 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-256 1228 chrX 6562821 6562851 chrX 6571303 6571333 Tirant 13 8480 1.5 5.5 3.5 2.9 8512 chrX 6562821 intron CG34417 + chrX 6567077 intron CG34417 + chrX 6571333 intron CG34417 + chrX_13_6565001 chrX_6565001 RAL-256 1229 chrX 6859564 6859576 chrX 6859977 6859989 4 413 1.0 0.0 0.5 2.7 425 chrX 6859564 intron CG14434 - chrX 6859776 intron CG14434 - chrX 6859989 intron CG14434 - chrX_4_6855001 chrX_6855001 RAL-256 1230 chrX 6897593 6897710 chrX 6897671 6897820 9 103 1.0 2.0 1.5 3.6 227 chrX 6897593 intergenic not near genes chrX 6897706 intergenic not near genes chrX 6897820 intergenic not near genes chrX_9_6895001 chrX_6895001 RAL-256 1231 chrX 6946276 6946303 chrX 6946600 6946626 5 323 3.5 1.0 2.2 1.6 350 chrX 6946276 intron CG14431 + chrX 6946451 intron CG14431 + chrX 6946626 intron CG14431 + chrX_5_6945001 chrX_6945001 RAL-256 1232 chrX 6984629 6984638 chrX 6984706 6984714 5 77 0.5 0.5 0.5 3.3 85 chrX 6984629 intron ogre - chrX 6984672 intron ogre - chrX 6984714 intron ogre - chrX_5_6980001 chrX_6980001 RAL-256 1233 chrX 7023599 7023630 chrX 7030989 7031018 Tabor 5 7390 1.0 2.5 1.8 1.8 7419 chrX 7023599 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031018 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-256 1234 chrX 7095622 7095646 chrX 7095753 7095783 5 136 1.5 0.0 0.8 2.8 161 chrX 7095622 intron Sxl - chrX 7095702 intron Sxl - chrX 7095783 intron Sxl - chrX_5_7095001 chrX_7095001 RAL-256 1235 chrX 7125252 7125277 chrX 7134410 7134435 roo 4 9158 1.5 3.0 2.2 1.2 9183 chrX 7125252 intergenic not near genes chrX 7129844 intergenic not near genes chrX 7134435 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-256 1236 chrX 7294522 7294540 chrX 7294616 7294638 6 94 2.5 2.5 2.5 1.7 116 chrX 7294522 intron,intron CR44357 -,CG1677 - chrX 7294580 intron,intron CR44357 -,CG1677 - chrX 7294638 intron,intron CR44357 -,CG1677 - chrX_6_7290001 chrX_7290001 RAL-256 1237 chrX 7845729 7845759 chrX 7847220 7847250 hopper2 5 1491 2.0 0.5 1.2 2.3 1521 chrX 7845729 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847250 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-256 1238 chrX 8355991 8356015 chrX 8356120 8356147 7 130 3.0 2.5 2.8 1.8 156 chrX 8355991 intron nAChRalpha3 - chrX 8356069 intron nAChRalpha3 - chrX 8356147 intron nAChRalpha3 - chrX_7_8355001 chrX_8355001 RAL-256 1239 chrX 8418109 8418146 chrX 8418185 8418222 8 76 2.0 1.0 1.5 3.2 113 chrX 8418109 intron Trf2 + chrX 8418166 intron Trf2 + chrX 8418222 intron Trf2 + chrX_8_8415001 chrX_8415001 RAL-256 1240 chrX 8730449 8730466 chrX 8730525 8730542 6 76 0.0 1.5 0.8 3.3 93 chrX 8730449 intergenic not near genes chrX 8730496 intergenic not near genes chrX 8730542 intergenic not near genes chrX_6_8730001 chrX_8730001 RAL-256 1241 chrX 8922327 8922354 chrX 8922761 8922788 jockey 9 432 4.0 2.0 3.0 2.2 461 chrX 8922327 intron rdgA + chrX 8922558 intron rdgA + chrX 8922788 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-256 1242 chrX 9377843 9377864 chrX 9377922 9377943 8 79 0.5 1.0 0.8 4.4 100 chrX 9377843 intron mgl - chrX 9377893 intron mgl - chrX 9377943 intron mgl - chrX_8_9375001 chrX_9375001 RAL-256 1243 chrX 9508132 9508154 chrX 9509650 9509672 jockey 7 1518 5.0 1.5 3.2 1.7 1540 chrX 9508132 intron CG32700 - chrX 9508902 intron CG32700 - chrX 9509672 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-256 1244 chrX 9543398 9543426 chrX 9543477 9543505 4 79 0.0 0.5 0.2 3.3 107 chrX 9543398 intron CG32700 - chrX 9543452 intron CG32700 - chrX 9543505 intron CG32700 - chrX_4_9540001 chrX_9540001 RAL-256 1245 chrX 9575790 9575800 chrX 9576114 9576124 mdg3 4 324 7.5 4.5 6.0 0.6 334 chrX 9575790 intron,exon CG32699 -,CG42395 - chrX 9575957 intron,intron CG32699 -,CG42395 - chrX 9576124 intron,exon CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-256 1246 chrX 9575801 9575822 chrX 9576113 9576142 mdg3 9 320 3.0 4.5 3.8 1.9 341 chrX 9575801 intron,exon CG32699 -,CG42395 - chrX 9575972 intron,intron CG32699 -,CG42395 - chrX 9576142 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-256 1247 chrX 10138217 10138242 chrX 10145720 10145746 412 4 7503 1.0 1.5 1.2 1.8 7529 chrX 10138217 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145746 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-256 1248 chrX 10401403 10401431 chrX 10401484 10401512 5 81 0.5 2.0 1.2 2.3 109 chrX 10401403 intron flw + chrX 10401458 intron flw + chrX 10401512 intron flw + chrX_5_10400001 chrX_10400001 RAL-256 1249 chrX 10532505 10532528 chrX 10532584 10532605 6 78 1.0 0.0 0.5 4.0 100 chrX 10532505 intron spri - chrX 10532555 intron spri - chrX 10532605 intron spri - chrX_6_10530001 chrX_10530001 RAL-256 1250 chrX 10550333 10550353 chrX 10550410 10550431 4 78 0.5 0.5 0.5 2.7 98 chrX 10550333 intron spri - chrX 10550382 intron spri - chrX 10550431 intron spri - chrX_4_10550001 chrX_10550001 RAL-256 1251 chrX 10550853 10550886 chrX 10552320 10552324 hobo 8 1463 4.5 3.0 3.8 1.7 1471 chrX 10550853 intron spri - chrX 10551588 intron spri - chrX 10552324 intron spri - chrX_8_10550001 chrX_10550001 RAL-256 1252 chrX 10719126 10719139 chrX 10719210 10719223 4 84 0.0 1.0 0.5 2.7 97 chrX 10719126 intron CG32676 - chrX 10719174 intron CG32676 - chrX 10719223 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-256 1253 chrX 11268562 11268591 chrX 11270055 11270066 hopper2 7 1489 0.5 6.5 3.5 1.6 1504 chrX 11268562 intron CG44422 - chrX 11269314 intron CG44422 - chrX 11270066 intron CG44422 - chrX_7_11265001 chrX_11265001 RAL-256 1254 chrX 11312063 11312087 chrX 11319409 11319438 Stalker2 4 7348 1.5 3.5 2.5 1.1 7375 chrX 11312063 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319438 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-256 1255 chrX 11633422 11633449 chrX 11640476 11640503 297 4 7054 1.5 1.5 1.5 1.6 7081 chrX 11633422 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-256 1256 chrX 11684872 11684883 chrX 11684997 11685009 5 126 2.5 2.0 2.2 1.6 137 chrX 11684872 intron bif + chrX 11684940 intron bif + chrX 11685009 intron bif + chrX_5_11680001 chrX_11680001 RAL-256 1257 chrX 11922372 11922383 chrX 11922507 11922519 6 136 1.0 0.5 0.8 3.3 147 chrX 11922372 exon Sclp - chrX 11922446 intron Sclp - chrX 11922519 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-256 1258 chrX 12038086 12038118 chrX 12038280 12038312 11 194 2.5 1.5 2.0 3.7 226 chrX 12038086 intergenic not near genes chrX 12038199 intergenic not near genes chrX 12038312 intergenic not near genes chrX_11_12035001 chrX_12035001 RAL-256 1259 chrX 12041190 12041206 chrX 12041627 12041643 8 436 4.5 6.5 5.5 1.2 453 chrX 12041190 intergenic not near genes chrX 12041416 intergenic not near genes chrX 12041643 intergenic not near genes chrX_8_12040001 chrX_12040001 RAL-256 1260 chrX 12080379 12080409 chrX 12080460 12080490 12 79 4.0 4.0 4.0 2.4 111 chrX 12080379 intron,intron CR43960 +,Ten-a + chrX 12080434 intron,intron CR43960 +,Ten-a + chrX 12080490 intron,intron CR43960 +,Ten-a + chrX_12_12080001 chrX_12080001 RAL-256 1261 chrX 12094038 12094067 chrX 12094130 12094158 8 89 0.5 1.0 0.8 4.4 120 chrX 12094038 intron,intron CR43960 +,Ten-a + chrX 12094098 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_8_12090001 chrX_12090001 RAL-256 1262 chrX 12150553 12150579 chrX 12150634 12150661 9 82 2.0 1.5 1.8 3.2 108 chrX 12150553 intron Ten-a + chrX 12150607 intron Ten-a + chrX 12150661 intron Ten-a + chrX_9_12150001 chrX_12150001 RAL-256 1263 chrX 12176738 12176766 chrX 12176813 12176828 13 74 4.0 3.0 3.5 2.9 90 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176783 intron,3` UTR Ten-a +,CG1924 - chrX 12176828 intron,3` UTR Ten-a +,CG1924 - chrX_13_12175001 chrX_12175001 RAL-256 1264 chrX 12277184 12277199 chrX 12277275 12277290 5 90 5.5 2.0 3.8 1.0 106 chrX 12277184 intron Ten-a + chrX 12277237 intron Ten-a + chrX 12277290 intron Ten-a + chrX_5_12275001 chrX_12275001 RAL-256 1265 chrX 12301955 12301981 chrX 12303261 12303287 X-element 6 1306 3.5 1.5 2.5 1.7 1332 chrX 12301955 intron Ten-a + chrX 12302621 intron Ten-a + chrX 12303287 intron Ten-a + chrX_6_12300001 chrX_12300001 RAL-256 1266 chrX 12350783 12350805 chrX 12350854 12350875 10 77 4.0 0.0 2.0 3.3 92 chrX 12350783 intergenic not near genes chrX 12350829 intergenic not near genes chrX 12350875 intergenic not near genes chrX_10_12350001 chrX_12350001 RAL-256 1267 chrX 12428342 12428375 chrX 12428454 12428477 10 110 1.5 2.0 1.8 3.6 135 chrX 12428342 intergenic not near genes chrX 12428410 intergenic not near genes chrX 12428477 intergenic not near genes chrX_10_12425001 chrX_12425001 RAL-256 1268 chrX 12752278 12752310 chrX 12752365 12752397 6 87 1.0 2.0 1.5 2.4 119 chrX 12752278 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752397 5` UTR CR44619 + chrX_6_12750001 chrX_12750001 RAL-256 1269 chrX 13374852 13374869 chrX 13374927 13374949 4 79 0.0 1.5 0.8 2.2 97 chrX 13374852 intron CG1640 + chrX 13374900 intron CG1640 + chrX 13374949 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-256 1270 chrX 13429461 13429488 chrX 13430610 13430637 jockey 8 1148 0.5 1.0 0.8 4.4 1176 chrX 13429461 intergenic not near genes chrX 13430049 intergenic not near genes chrX 13430637 intergenic not near genes chrX_8_13430001 chrX_13430001 RAL-256 1271 chrX 13626226 13626253 chrX 13626408 13626431 5 178 1.5 1.5 1.5 2.0 205 chrX 13626226 intron NFAT + chrX 13626328 intron NFAT + chrX 13626431 intron NFAT + chrX_5_13625001 chrX_13625001 RAL-256 1272 chrX 13943278 13943302 chrX 13943368 13943393 6 90 0.0 5.5 2.8 1.6 115 chrX 13943278 intron mamo - chrX 13943336 intron mamo - chrX 13943393 intron mamo - chrX_6_13940001 chrX_13940001 RAL-256 1273 chrX 13975883 13975902 chrX 13975960 13975978 5 76 0.0 3.0 1.5 2.0 95 chrX 13975883 intron mamo - chrX 13975930 intron mamo - chrX 13975978 intron mamo - chrX_5_13975001 chrX_13975001 RAL-256 1274 chrX 14105027 14105054 chrX 14114178 14114205 roo 9 9151 4.5 3.5 4.0 1.8 9178 chrX 14105027 intergenic not near genes chrX 14109616 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-256 1275 chrX 14331763 14331775 chrX 14331834 14331860 4 82 0.5 1.5 1.0 2.0 97 chrX 14331763 intron dpr8 + chrX 14331812 intron dpr8 + chrX 14331860 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-256 1276 chrX 14370692 14370729 chrX 14370783 14370820 16 86 0.5 5.0 2.8 4.2 128 chrX 14370692 intron dpr8 + chrX 14370756 intron dpr8 + chrX 14370820 intron dpr8 + chrX_16_14370001 chrX_14370001 RAL-256 1277 chrX 14597734 14597746 chrX 14597811 14597822 4 76 0.5 2.0 1.2 1.8 88 chrX 14597734 intron CG9413 - chrX 14597778 intron CG9413 - chrX 14597822 intron CG9413 - chrX_4_14595001 chrX_14595001 RAL-256 1278 chrX 14636472 14636495 chrX 14641913 14641920 I-element 7 5437 3.5 3.0 3.2 1.7 5448 chrX 14636472 intron NetA - chrX 14639196 intron NetA - chrX 14641920 intron NetA - chrX_7_14635001 chrX_14635001 RAL-256 1279 chrX 15236267 15236289 chrX 15236366 15236395 4 106 2.0 1.5 1.8 1.4 128 chrX 15236267 intergenic not near genes chrX 15236331 intergenic not near genes chrX 15236395 intergenic not near genes chrX_4_15235001 chrX_15235001 RAL-256 1280 chrX 15273725 15273736 chrX 15274874 15274892 1360 5 1158 2.5 5.0 3.8 1.0 1167 chrX 15273725 intergenic not near genes chrX 15274308 intergenic not near genes chrX 15274892 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-256 1281 chrX 15413051 15413077 chrX 15417353 15417378 Juan 5 4301 4.5 2.5 3.5 1.1 4327 chrX 15413051 intron Cngl - chrX 15415214 intron Cngl - chrX 15417378 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-256 1282 chrX 15432803 15432815 chrX 15432998 15433010 4 194 1.5 0.0 0.8 2.2 207 chrX 15432803 intron Cngl - chrX 15432906 intron Cngl - chrX 15433010 intron Cngl - chrX_4_15430001 chrX_15430001 RAL-256 1283 chrX 15497597 15497615 chrX 15497687 15497705 7 90 2.0 1.0 1.5 2.8 108 chrX 15497597 intron,3` UTR Gmap +,CR44888 - chrX 15497651 intron,3` UTR Gmap +,CR44888 - chrX 15497705 intron,3` UTR Gmap +,CR44888 - chrX_7_15495001 chrX_15495001 RAL-256 1284 chrX 15678048 15678068 chrX 15678119 15678144 6 75 1.5 1.5 1.5 2.4 96 chrX 15678048 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678144 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-256 1285 chrX 16936008 16936032 chrX 16936426 16936450 jockey 5 418 1.0 0.5 0.8 2.8 442 chrX 16936008 intron CG4928 + chrX 16936229 intron CG4928 + chrX 16936450 intron CG4928 + chrX_5_16935001 chrX_16935001 RAL-256 1286 chrX 16951330 16951356 chrX 16951408 16951420 7 77 2.5 5.0 3.8 1.5 90 chrX 16951330 exon RhoGAP15B + chrX 16951375 exon RhoGAP15B + chrX 16951420 exon RhoGAP15B + chrX_7_16950001 chrX_16950001 RAL-256 1287 chrX 16965536 16965557 chrX 16965631 16965652 5 95 1.0 0.5 0.8 2.8 116 chrX 16965536 intron CG9086 - chrX 16965594 intron CG9086 - chrX 16965652 intron CG9086 - chrX_5_16965001 chrX_16965001 RAL-256 1288 chrX 1053120 1053120 chrX 16983076 16983076 4 15929956 11.5 5.0 8.2 0.4 15929956 chrX 1053120 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-256 1289 chrX 17011968 17011997 chrX 17012051 17012073 7 80 1.0 1.5 1.2 3.2 105 chrX 17011968 intron CG45002 - chrX 17012020 intron CG45002 - chrX 17012073 intron CG45002 - chrX_7_17010001 chrX_17010001 RAL-256 1290 chrX 17282875 17282905 chrX 17282953 17282983 6 75 1.0 0.0 0.5 4.0 108 chrX 17282875 intron CG5445 + chrX 17282929 5` UTR CG5445 + chrX 17282983 intron CG5445 + chrX_6_17280001 chrX_17280001 RAL-256 1291 chrX 17352598 17352622 chrX 17352701 17352725 6 103 0.0 3.0 1.5 2.4 127 chrX 17352598 intergenic not near genes chrX 17352662 intergenic not near genes chrX 17352725 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-256 1292 chrX 17545011 17545032 chrX 17545092 17545113 4 78 1.5 3.5 2.5 1.1 102 chrX 17545011 intron CG43658 - chrX 17545062 intron CG43658 - chrX 17545113 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-256 1293 chrX 17881479 17881501 chrX 17881677 17881700 5 195 1.5 0.5 1.0 2.5 221 chrX 17881479 intron mnb - chrX 17881590 intron mnb - chrX 17881700 intron mnb - chrX_5_17880001 chrX_17880001 RAL-256 1294 chrX 18194070 18194102 chrX 18194605 18194637 BS 5 535 0.5 1.5 1.0 2.5 567 chrX 18194070 intron Frq2 + chrX 18194354 intron Frq2 + chrX 18194637 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-256 1295 chrX 18427385 18427404 chrX 18427796 18427815 5 411 2.0 1.0 1.5 2.0 430 chrX 18427385 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427815 intergenic not near genes chrX_5_18425001 chrX_18425001 RAL-256 1296 chrX 18429495 18429522 chrX 18434805 18434833 Transpac 4 5311 0.5 2.0 1.2 1.8 5338 chrX 18429495 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434833 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-256 1297 chrX 18490043 18490055 chrX 18490198 18490208 4 154 1.0 2.5 1.8 1.4 165 chrX 18490043 intergenic CG15046 - chrX 18490126 intergenic not near genes chrX 18490208 intergenic not near genes chrX_4_18490001 chrX_18490001 RAL-256 1298 chrX 19076379 19076403 chrX 19076529 19076552 6 149 4.0 3.0 3.5 1.3 173 chrX 19076379 intergenic not near genes chrX 19076466 intergenic not near genes chrX 19076552 intergenic not near genes chrX_6_19075001 chrX_19075001 RAL-256 1299 chrX 19080331 19080353 chrX 19080437 19080459 4 106 3.5 2.0 2.8 1.1 128 chrX 19080331 intergenic not near genes chrX 19080395 intergenic not near genes chrX 19080459 intergenic not near genes chrX_4_19080001 chrX_19080001 RAL-256 1300 chrX 19106829 19106846 chrX 19106900 19106922 5 75 2.5 1.0 1.8 1.8 93 chrX 19106829 intergenic not near genes chrX 19106876 intergenic not near genes chrX 19106922 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-256 1301 chrX 19162676 19162696 chrX 19162760 19162777 9 83 2.5 4.0 3.2 2.1 101 chrX 19162676 intron RhoGAP18B - chrX 19162726 intron RhoGAP18B - chrX 19162777 intron RhoGAP18B - chrX_9_19160001 chrX_19160001 RAL-256 1302 chrX 13057298 13057299 chrX 19242812 19242813 5 6185514 1.0 2.0 1.5 2.0 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-256 1303 chrX 19472148 19472153 chrX 19472705 19472721 jockey 4 563 1.5 5.0 3.2 1.0 573 chrX 19472148 intergenic kek5 + chrX 19472434 intergenic not near genes chrX 19472721 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-256 1304 chrX 19562357 19562390 chrX 19562437 19562442 8 74 2.5 4.0 3.2 1.9 85 chrX 19562357 intron Grip84 - chrX 19562400 intron Grip84 - chrX 19562442 intron Grip84 - chrX_8_19560001 chrX_19560001 RAL-256 1305 chrX 19593953 19593978 chrX 19594038 19594063 9 85 2.5 7.5 5.0 1.5 110 chrX 19593953 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594063 intron CG14205 + chrX_9_19590001 chrX_19590001 RAL-256 1306 chrX 19710074 19710104 chrX 19711857 19711887 S-element 13 1783 1.5 2.5 2.0 4.3 1813 chrX 19710074 intron meso18E - chrX 19710980 intron meso18E - chrX 19711887 intron meso18E - chrX_13_19710001 chrX_19710001 RAL-256 1307 chrX 19744640 19744660 chrX 19744765 19744781 5 121 17.0 14.0 15.5 0.3 141 chrX 19744640 5` UTR,exon CG33932 +,Rpp20 + chrX 19744710 intron,intron CG33932 +,Rpp20 + chrX 19744781 5` UTR,exon CG33932 +,Rpp20 + chrX_5_19740001 chrX_19740001 RAL-256 1308 chrX 19884087 19884119 chrX 19884162 19884192 5 73 1.5 1.0 1.2 2.3 105 chrX 19884087 intron Hers + chrX 19884140 intron Hers + chrX 19884192 intron Hers + chrX_5_19880001 chrX_19880001 RAL-256 1309 chrX 20041542 20041567 chrX 20041622 20041647 5 80 1.5 1.5 1.5 2.0 105 chrX 20041542 intron Dop2R - chrX 20041594 intron Dop2R - chrX 20041647 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-256 1310 chrX 20069271 20069297 chrX 20069403 20069415 6 130 1.5 2.5 2.0 2.0 144 chrX 20069271 intergenic not near genes chrX 20069343 intergenic not near genes chrX 20069415 intergenic not near genes chrX_6_20065001 chrX_20065001 RAL-256 1311 chrX 20105203 20105224 chrX 20105306 20105329 8 104 31.5 35.0 33.2 0.2 126 chrX 20105203 intergenic not near genes chrX 20105266 intergenic not near genes chrX 20105329 intergenic not near genes chrX_8_20105001 chrX_20105001 RAL-256 1312 chrX 20312890 20312908 chrX 20312968 20312986 6 78 0.5 3.0 1.8 2.1 96 chrX 20312890 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312986 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-256 1313 chrX 20377329 20377349 chrX 20378779 20378816 hobo 6 1464 2.0 2.0 2.0 2.0 1487 chrX 20377329 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378816 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-256 1314 chrX 20426180 20426192 chrX 20428388 20428404 5 2203 29.0 18.5 23.8 0.2 2224 chrX 20426180 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428404 exon CG11710 - chrX_5_20425001 chrX_20425001 RAL-256 1315 chrX 20499166 20499189 chrX 20499249 20499272 7 83 3.5 1.5 2.5 2.0 106 chrX 20499166 intron RhoGAP19D - chrX 20499219 intron RhoGAP19D - chrX 20499272 intron RhoGAP19D - chrX_7_20495001 chrX_20495001 RAL-256 1316 chrX 20504128 20504145 chrX 20505644 20505666 transib2 4 1518 2.0 2.5 2.2 1.2 1538 chrX 20504128 intron RhoGAP19D - chrX 20504897 intron RhoGAP19D - chrX 20505666 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-256 1317 chrX 20634429 20634444 chrX 20634514 20634521 4 82 2.0 2.0 2.0 1.3 92 chrX 20634429 intergenic not near genes chrX 20634475 intergenic not near genes chrX 20634521 intergenic not near genes chrX_4_20630001 chrX_20630001 RAL-256 1318 chrX 20940718 20940751 chrX 20942187 20942219 hobo 10 1468 5.5 1.5 3.5 2.2 1501 chrX 20940718 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942219 intergenic not near genes chrX_10_20940001 chrX_20940001 RAL-256 1319 chrX 21009823 21009831 chrX 21009931 21009939 4 108 1.0 0.5 0.8 2.2 116 chrX 21009823 intergenic not near genes chrX 21009881 intergenic not near genes chrX 21009939 intergenic not near genes chrX_4_21005001 chrX_21005001 RAL-256 1320 chrX 21042555 21042576 chrX 21045340 21045365 13 2786 16.5 22.5 19.5 0.6 2810 chrX 21042555 exon Mgstl + chrX 21043960 exon,3` UTR Mgstl +,CR44431 - chrX 21045365 intron Cbs + chrX_13_21040001 chrX_21040001 RAL-256 1321 chrX 21403836 21403868 chrX 21403917 21403949 6 76 2.0 4.5 3.2 1.4 113 chrX 21403836 intergenic not near genes chrX 21403892 intergenic not near genes chrX 21403949 intergenic not near genes chrX_6_21400001 chrX_21400001 RAL-256 1322 chrX 21500564 21500589 chrX 21500765 21500790 5 201 0.0 1.5 0.8 2.8 226 chrX 21500564 intron CR45082 - chrX 21500677 intron CR45082 - chrX 21500790 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-256 1323 chrX 22992406 22992429 chrX 22992537 22992560 5 131 0.5 2.5 1.5 2.0 154 chrX 22992406 intron,intron stnA -,stnB - chrX 22992483 intron,intron stnA -,stnB - chrX 22992560 intron,intron stnA -,stnB - chrX_5_22990001 chrX_22990001 RAL-256 1324 chrY 975605 975821 chrY 975721 975910 13 107 165.5 159.0 162.2 0.1 305 chrY 975605 intergenic not near genes chrY 975758 intergenic not near genes chrY 975910 intergenic not near genes chrY_13_975001 chrY_975001 RAL-256