SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 297688 297719 chr2L 297788 297801 6 96 2.5 2.0 2.2 1.9 113 chr2L 297688 intergenic Pi3K21B +,Hop + chr2L 297744 intergenic Pi3K21B +,Hop + chr2L 297801 intergenic Pi3K21B +,Hop + chr2L_6_295001 chr2L_295001 RAL-239 2 chr2L 312825 312850 chr2L 312904 312929 6 79 2.0 2.5 2.2 1.9 104 chr2L 312825 intron Plc21C + chr2L 312877 intron Plc21C + chr2L 312929 intron Plc21C + chr2L_6_310001 chr2L_310001 RAL-239 3 chr2L 323455 323481 chr2L 323533 323559 9 75 2.0 4.5 3.2 2.1 104 chr2L 323455 intron Plc21C + chr2L 323507 intron Plc21C + chr2L 323559 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-239 4 chr2L 325138 325156 chr2L 325204 325218 11 72 4.5 2.5 3.5 2.4 80 chr2L 325138 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325218 intron Plc21C + chr2L_11_325001 chr2L_325001 RAL-239 5 chr2L 371448 371459 chr2L 371527 371538 4 79 0.5 3.5 2.0 1.3 90 chr2L 371448 intergenic not near genes chr2L 371493 intergenic not near genes chr2L 371538 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-239 6 chr2L 650944 650971 chr2L 651216 651238 5 268 2.0 1.0 1.5 2.0 294 chr2L 650944 intron ds - chr2L 651091 intron ds - chr2L 651238 intron ds - chr2L_5_650001 chr2L_650001 RAL-239 7 chr2L 666280 666301 chr2L 666355 666376 6 75 1.0 0.0 0.5 4.0 96 chr2L 666280 intron ds - chr2L 666328 intron ds - chr2L 666376 intron ds - chr2L_6_665001 chr2L_665001 RAL-239 8 chr2L 763596 763628 chr2L 763672 763703 7 76 3.5 3.0 3.2 1.7 107 chr2L 763596 intergenic not near genes chr2L 763650 intergenic not near genes chr2L 763703 intergenic not near genes chr2L_7_760001 chr2L_760001 RAL-239 9 chr2L 770487 770493 chr2L 772252 772258 Bari1 4 1773 5.5 4.5 5.0 0.7 1771 chr2L 770487 intergenic not near genes chr2L 771372 intergenic not near genes chr2L 772258 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-239 10 chr2L 877842 877862 chr2L 877923 877943 9 81 4.0 4.0 4.0 1.8 101 chr2L 877842 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-239 11 chr2L 936584 936593 chr2L 936673 936683 4 89 0.5 0.5 0.5 2.7 99 chr2L 936584 intron CG4341 + chr2L 936634 intron CG4341 + chr2L 936683 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-239 12 chr2L 976883 976900 chr2L 984519 984536 roo 4 7635 1.0 0.5 0.8 2.2 7653 chr2L 976883 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984536 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-239 13 chr2L 1035558 1035592 chr2L 1035635 1035669 8 77 0.5 4.5 2.5 2.3 111 chr2L 1035558 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-239 14 chr2L 1164248 1164282 chr2L 1164333 1164368 5 86 0.0 1.0 0.5 3.3 120 chr2L 1164248 intergenic IntS14 +,CG5080 - chr2L 1164308 intergenic IntS14 +,CG5080 - chr2L 1164368 intergenic IntS14 +,CG5080 - chr2L_5_1160001 chr2L_1160001 RAL-239 15 chr2L 1178689 1178699 chr2L 1178773 1178783 5 84 2.5 4.0 3.2 1.2 94 chr2L 1178689 intron CG4896 + chr2L 1178736 intron CG4896 + chr2L 1178783 intron CG4896 + chr2L_5_1175001 chr2L_1175001 RAL-239 16 chr2L 1220133 1220160 chr2L 1227599 1227625 blood 9 7465 3.5 0.0 1.8 3.2 7492 chr2L 1220133 intron CG42329 + chr2L 1223879 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-239 17 chr2L 1271006 1271037 chr2L 1271111 1271142 10 104 5.0 3.0 4.0 2.0 136 chr2L 1271006 intron robo3 + chr2L 1271074 intron robo3 + chr2L 1271142 intron robo3 + chr2L_10_1270001 chr2L_1270001 RAL-239 18 chr2L 1529062 1529067 chr2L 1529153 1529158 4 91 8.5 0.0 4.2 0.8 96 chr2L 1529062 intergenic not near genes chr2L 1529110 intergenic not near genes chr2L 1529158 intergenic not near genes chr2L_4_1525001 chr2L_1525001 RAL-239 19 chr2L 1570694 1570706 chr2L 1573566 1573578 F-element 4 2872 3.0 4.0 3.5 0.9 2884 chr2L 1570694 intron haf + chr2L 1572136 intron haf + chr2L 1573578 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-239 20 chr2L 1590956 1590987 chr2L 1591031 1591063 10 75 0.5 1.5 1.0 5.0 107 chr2L 1590956 intron haf + chr2L 1591010 intron haf + chr2L 1591063 intron haf + chr2L_10_1590001 chr2L_1590001 RAL-239 21 chr2L 1635404 1635428 chr2L 1635539 1635563 4 136 0.0 1.5 0.8 2.2 159 chr2L 1635404 intergenic not near genes chr2L 1635484 intergenic not near genes chr2L 1635563 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-239 22 chr2L 1678975 1679006 chr2L 1686440 1686471 blood 7 7465 0.0 2.5 1.2 3.2 7496 chr2L 1678975 intron chinmo + chr2L 1682723 intron chinmo + chr2L 1686471 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-239 23 chr2L 1711356 1711385 chr2L 1711678 1711709 mdg3 14 321 2.5 4.5 3.5 3.1 353 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711709 3` UTR frtz - chr2L_14_1710001 chr2L_1710001 RAL-239 24 chr2L 1721822 1721855 chr2L 1721906 1721938 6 84 1.0 1.0 1.0 3.0 116 chr2L 1721822 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721938 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-239 25 chr2L 1819444 1819474 chr2L 1819577 1819607 6 133 0.0 2.0 1.0 3.0 163 chr2L 1819444 intergenic not near genes chr2L 1819526 intergenic not near genes chr2L 1819607 intergenic not near genes chr2L_6_1815001 chr2L_1815001 RAL-239 26 chr2L 1825245 1825256 chr2L 1825407 1825417 4 162 2.5 3.0 2.8 1.1 172 chr2L 1825245 exon CG31664 - chr2L 1825331 exon CG31664 - chr2L 1825417 exon CG31664 - chr2L_4_1825001 chr2L_1825001 RAL-239 27 chr2L 1999016 1999031 chr2L 1999136 1999151 4 120 1.5 0.0 0.8 2.2 135 chr2L 1999016 intron CG33543 - chr2L 1999084 intron CG33543 - chr2L 1999151 intron CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-239 28 chr2L 2100375 2100406 chr2L 2109526 2109546 roo 8 9149 2.5 2.5 2.5 2.3 9171 chr2L 2100375 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-239 29 chr2L 2112117 2112145 chr2L 2119775 2119795 opus 8 7654 2.0 2.5 2.2 2.5 7678 chr2L 2112117 intergenic not near genes chr2L 2115956 intergenic not near genes chr2L 2119795 intergenic not near genes chr2L_8_2115001 chr2L_2115001 RAL-239 30 chr2L 2179562 2179582 chr2L 2179793 2179814 5 231 3.0 3.5 3.2 1.2 252 chr2L 2179562 intergenic not near genes chr2L 2179688 intergenic not near genes chr2L 2179814 intergenic not near genes chr2L_5_2175001 chr2L_2175001 RAL-239 31 chr2L 2311078 2311083 chr2L 2311174 2311179 4 96 3.0 0.5 1.8 1.4 101 chr2L 2311078 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311179 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-239 32 chr2L 2317601 2317613 chr2L 2317674 2317689 5 74 10.0 8.5 9.2 0.5 88 chr2L 2317601 intron,intron CG9967 -,eys + chr2L 2317645 intron,intron CG9967 -,eys + chr2L 2317689 intron,intron CG9967 -,eys + chr2L_5_2315001 chr2L_2315001 RAL-239 33 chr2L 2587833 2587846 chr2L 2587895 2587906 7 71 3.0 4.0 3.5 1.6 73 chr2L 2587833 intergenic not near genes chr2L 2587870 intergenic not near genes chr2L 2587906 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-239 34 chr2L 2895632 2895656 chr2L 2895768 2895792 8 135 3.5 2.5 3.0 2.0 160 chr2L 2895632 intron lilli + chr2L 2895712 intron lilli + chr2L 2895792 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-239 35 chr2L 2937422 2937449 chr2L 2937499 2937505 10 75 1.5 3.5 2.5 2.9 83 chr2L 2937422 intron lilli + chr2L 2937464 intron lilli + chr2L 2937505 intron lilli + chr2L_10_2935001 chr2L_2935001 RAL-239 36 chr2L 3008907 3008936 chr2L 3009016 3009044 11 108 3.0 1.5 2.2 3.4 137 chr2L 3008907 intron CG17265 + chr2L 3008976 intron CG17265 + chr2L 3009044 intron CG17265 + chr2L_11_3005001 chr2L_3005001 RAL-239 37 chr2L 3073033 3073059 chr2L 3078236 3078261 copia 8 5203 2.5 3.0 2.8 2.1 5228 chr2L 3073033 intron toc - chr2L 3075647 intron toc - chr2L 3078261 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-239 38 chr2L 3108867 3108889 chr2L 3108944 3108966 5 75 2.0 0.0 1.0 2.5 99 chr2L 3108867 intron toc - chr2L 3108916 intron toc - chr2L 3108966 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-239 39 chr2L 3147276 3147308 chr2L 3147353 3147384 13 74 3.5 6.5 5.0 2.2 108 chr2L 3147276 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147384 3` UTR Mad - chr2L_13_3145001 chr2L_3145001 RAL-239 40 chr2L 3191516 3191544 chr2L 3191597 3191625 6 81 0.5 1.0 0.8 3.3 109 chr2L 3191516 intron CG34393 - chr2L 3191570 intron CG34393 - chr2L 3191625 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-239 41 chr2L 3192209 3192235 chr2L 3192320 3192345 5 111 2.5 2.0 2.2 1.6 136 chr2L 3192209 exon CG34393 - chr2L 3192277 intron CG34393 - chr2L 3192345 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-239 42 chr2L 3192236 3192240 chr2L 3192319 3192351 4 97 2.0 2.0 2.0 1.3 115 chr2L 3192236 intron CG34393 - chr2L 3192294 intron CG34393 - chr2L 3192351 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-239 43 chr2L 3251501 3251527 chr2L 3259066 3259092 springer 5 7565 1.0 3.0 2.0 1.7 7591 chr2L 3251501 intergenic not near genes chr2L 3255296 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-239 44 chr2L 3317094 3317125 chr2L 3317180 3317211 8 86 3.5 2.0 2.8 2.1 117 chr2L 3317094 3` UTR,3` UTR CG3277 +,CG3326 - chr2L 3317152 3` UTR,3` UTR CG3277 +,CG3326 - chr2L 3317211 3` UTR,3` UTR CG3277 +,CG3326 - chr2L_8_3315001 chr2L_3315001 RAL-239 45 chr2L 3542543 3542570 chr2L 3542625 3542652 8 82 2.5 1.5 2.0 2.7 109 chr2L 3542543 intron drm + chr2L 3542598 intron drm + chr2L 3542652 intron drm + chr2L_8_3540001 chr2L_3540001 RAL-239 46 chr2L 3603339 3603363 chr2L 3603416 3603439 6 74 1.0 1.0 1.0 3.0 100 chr2L 3603339 intergenic not near genes chr2L 3603389 intergenic not near genes chr2L 3603439 intergenic not near genes chr2L_6_3600001 chr2L_3600001 RAL-239 47 chr2L 3615998 3616004 chr2L 3616076 3616083 7 80 4.0 4.0 4.0 1.4 85 chr2L 3615998 intergenic CR44310 + chr2L 3616040 intergenic CR44310 + chr2L 3616083 intergenic CR44310 + chr2L_7_3615001 chr2L_3615001 RAL-239 48 chr2L 3634115 3634134 chr2L 3634197 3634216 6 82 2.0 2.5 2.2 1.9 101 chr2L 3634115 intron for - chr2L 3634166 intron for - chr2L 3634216 intron for - chr2L_6_3630001 chr2L_3630001 RAL-239 49 chr2L 3939254 3939283 chr2L 3939327 3939359 5 75 2.5 2.0 2.2 1.6 105 chr2L 3939254 intron fred - chr2L 3939306 intron fred - chr2L 3939359 intron fred - chr2L_5_3935001 chr2L_3935001 RAL-239 50 chr2L 3965510 3965543 chr2L 3965611 3965614 8 93 3.5 4.0 3.8 1.7 104 chr2L 3965510 intron fred - chr2L 3965562 intron fred - chr2L 3965614 intron fred - chr2L_8_3965001 chr2L_3965001 RAL-239 51 chr2L 4014655 4014682 chr2L 4014798 4014825 10 143 2.0 5.0 3.5 2.2 170 chr2L 4014655 intergenic not near genes chr2L 4014740 intergenic not near genes chr2L 4014825 intergenic not near genes chr2L_10_4010001 chr2L_4010001 RAL-239 52 chr2L 4066042 4066059 chr2L 4068867 4068884 Juan 6 2825 3.0 1.5 2.2 1.9 2842 chr2L 4066042 intron ed + chr2L 4067463 intron ed + chr2L 4068884 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-239 53 chr2L 4434526 4434548 chr2L 4434643 4434665 5 117 0.5 2.0 1.2 2.3 139 chr2L 4434526 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L 4434596 intron,intron,intron CG15431 -,CG34177 +,CG34178 + chr2L 4434665 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L_5_4430001 chr2L_4430001 RAL-239 54 chr2L 4576612 4576642 chr2L 4576851 4576881 5 235 0.0 6.0 3.0 1.2 269 chr2L 4576612 intron dp - chr2L 4576746 intron dp - chr2L 4576881 intron dp - chr2L_5_4575001 chr2L_4575001 RAL-239 55 chr2L 4601702 4601736 chr2L 4609143 4609177 mdg1 12 7441 2.5 3.0 2.8 3.2 7475 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-239 56 chr2L 4657579 4657594 chr2L 4657638 4657670 4 72 1.5 1.0 1.2 1.8 91 chr2L 4657579 intergenic not near genes chr2L 4657624 intergenic not near genes chr2L 4657670 intergenic not near genes chr2L_4_4655001 chr2L_4655001 RAL-239 57 chr2L 4670122 4670151 chr2L 4670371 4670376 7 244 1.0 2.0 1.5 2.8 254 chr2L 4670122 intergenic not near genes chr2L 4670249 intergenic not near genes chr2L 4670376 intergenic not near genes chr2L_7_4670001 chr2L_4670001 RAL-239 58 chr2L 4672079 4672112 chr2L 4672156 4672189 6 77 0.0 2.0 1.0 3.0 110 chr2L 4672079 intergenic not near genes chr2L 4672134 intergenic not near genes chr2L 4672189 intergenic not near genes chr2L_6_4670001 chr2L_4670001 RAL-239 59 chr2L 4740422 4740457 chr2L 4740733 4740746 7 297 1.5 3.5 2.5 2.0 324 chr2L 4740422 intron CG15630 - chr2L 4740584 intron CG15630 - chr2L 4740746 intron CG15630 - chr2L_7_4740001 chr2L_4740001 RAL-239 60 chr2L 4792840 4792866 chr2L 4792929 4792955 17 88 6.5 7.0 6.8 2.2 115 chr2L 4792840 intron CG15630 - chr2L 4792898 intron CG15630 - chr2L 4792955 intron CG15630 - chr2L_17_4790001 chr2L_4790001 RAL-239 61 chr2L 4819505 4819516 chr2L 4819628 4819639 4 123 3.0 5.0 4.0 0.8 134 chr2L 4819505 intergenic not near genes chr2L 4819572 intergenic not near genes chr2L 4819639 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-239 62 chr2L 5027966 5027993 chr2L 5028050 5028076 4 83 0.0 2.5 1.2 1.8 110 chr2L 5027966 intron vkg - chr2L 5028021 intron vkg - chr2L 5028076 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-239 63 chr2L 5061423 5061445 chr2L 5061504 5061526 4 81 2.0 1.0 1.5 1.6 103 chr2L 5061423 intron qtc + chr2L 5061474 intron qtc + chr2L 5061526 intron qtc + chr2L_4_5060001 chr2L_5060001 RAL-239 64 chr2L 5120973 5121005 chr2L 5121067 5121099 5 94 2.5 3.5 3.0 1.2 126 chr2L 5120973 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121099 intron Msp300 + chr2L_5_5120001 chr2L_5120001 RAL-239 65 chr2L 5252520 5252553 chr2L 5252609 5252611 11 78 2.0 5.0 3.5 2.4 91 chr2L 5252520 intron tkv - chr2L 5252566 intron tkv - chr2L 5252611 intron tkv - chr2L_11_5250001 chr2L_5250001 RAL-239 66 chr2L 5449092 5449114 chr2L 5449413 5449435 4 321 1.5 2.0 1.8 1.4 343 chr2L 5449092 intergenic not near genes chr2L 5449264 intergenic not near genes chr2L 5449435 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-239 67 chr2L 5500060 5500078 chr2L 5500146 5500164 5 86 3.0 6.0 4.5 0.9 104 chr2L 5500060 intergenic not near genes chr2L 5500112 intergenic not near genes chr2L 5500164 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-239 68 chr2L 5508535 5508560 chr2L 5508611 5508636 8 76 0.5 2.0 1.2 3.6 101 chr2L 5508535 intergenic not near genes chr2L 5508586 intergenic not near genes chr2L 5508636 intergenic not near genes chr2L_8_5505001 chr2L_5505001 RAL-239 69 chr2L 5511328 5511358 chr2L 5511411 5511441 8 83 2.5 1.5 2.0 2.7 113 chr2L 5511328 intergenic not near genes chr2L 5511384 intergenic not near genes chr2L 5511441 intergenic not near genes chr2L_8_5510001 chr2L_5510001 RAL-239 70 chr2L 5692735 5692755 chr2L 5692912 5692932 5 175 2.0 3.5 2.8 1.3 197 chr2L 5692735 intergenic not near genes chr2L 5692834 intergenic not near genes chr2L 5692932 intergenic not near genes chr2L_5_5690001 chr2L_5690001 RAL-239 71 chr2L 5827724 5827741 chr2L 5836713 5836745 roo 7 9002 4.0 4.0 4.0 1.4 9021 chr2L 5827724 intron TrissinR + chr2L 5832234 intron TrissinR + chr2L 5836745 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-239 72 chr2L 5854669 5854692 chr2L 5854768 5854786 7 98 4.0 2.5 3.2 1.7 117 chr2L 5854669 intron TrissinR + chr2L 5854728 intron TrissinR + chr2L 5854786 intron TrissinR + chr2L_7_5850001 chr2L_5850001 RAL-239 73 chr2L 5854694 5854697 chr2L 5854765 5854782 5 86 3.5 2.0 2.8 1.3 88 chr2L 5854694 intron TrissinR + chr2L 5854738 intron TrissinR + chr2L 5854782 intron TrissinR + chr2L_5_5850001 chr2L_5850001 RAL-239 74 chr2L 5887608 5887635 chr2L 5887689 5887716 5 81 0.5 0.5 0.5 3.3 108 chr2L 5887608 3` UTR CR44577 - chr2L 5887662 3` UTR CR44577 - chr2L 5887716 3` UTR CR44577 - chr2L_5_5885001 chr2L_5885001 RAL-239 75 chr2L 5904464 5904475 chr2L 5904544 5904555 4 80 1.5 0.0 0.8 2.2 91 chr2L 5904464 intron CG9021 - chr2L 5904510 intron CG9021 - chr2L 5904555 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-239 76 chr2L 6133602 6133611 chr2L 6133694 6133703 4 91 3.5 3.0 3.2 1.0 101 chr2L 6133602 3` UTR CR45719 - chr2L 6133652 3` UTR CR45719 - chr2L 6133703 intergenic CR45719 - chr2L_4_6130001 chr2L_6130001 RAL-239 77 chr2L 6185448 6185468 chr2L 6185542 6185564 6 95 3.0 2.0 2.5 1.7 116 chr2L 6185448 intron CG34380 + chr2L 6185506 intron CG34380 + chr2L 6185564 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-239 78 chr2L 6343666 6343673 chr2L 6343980 6343987 5 314 21.5 15.5 18.5 0.3 321 chr2L 6343666 intron Cpr + chr2L 6343826 intron Cpr + chr2L 6343987 intron Cpr + chr2L_5_6340001 chr2L_6340001 RAL-239 79 chr2L 6363167 6363171 chr2L 6366085 6366093 Burdock 4 2920 1.5 4.5 3.0 1.0 2926 chr2L 6363167 intergenic not near genes chr2L 6364630 intergenic not near genes chr2L 6366093 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-239 80 chr2L 6426854 6426887 chr2L 6445114 6445147 roo 8 18260 1.5 5.0 3.2 1.9 18293 chr2L 6426854 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-239 81 chr2L 6590092 6590119 chr2L 6590170 6590195 10 76 5.0 3.5 4.2 1.9 103 chr2L 6590092 intron CG11319 - chr2L 6590144 intron CG11319 - chr2L 6590195 intron CG11319 - chr2L_10_6590001 chr2L_6590001 RAL-239 82 chr2L 6626886 6626914 chr2L 6626971 6626997 7 83 1.5 3.5 2.5 2.0 111 chr2L 6626886 intron Oatp26F - chr2L 6626942 intron Oatp26F - chr2L 6626997 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-239 83 chr2L 6640915 6640937 chr2L 6641003 6641032 8 92 4.0 1.0 2.5 2.3 117 chr2L 6640915 exon CG31635 - chr2L 6640974 intron CG31635 - chr2L 6641032 intron CG31635 - chr2L_8_6640001 chr2L_6640001 RAL-239 84 chr2L 6646326 6646351 chr2L 6646394 6646403 4 57 9.0 14.5 11.8 0.3 77 chr2L 6646326 exon CG31635 - chr2L 6646364 exon CG31635 - chr2L 6646403 exon CG31635 - chr2L_4_6645001 chr2L_6645001 RAL-239 85 chr2L 6715751 6715780 chr2L 6715836 6715865 4 85 0.5 0.5 0.5 2.7 114 chr2L 6715751 intron AkhR - chr2L 6715808 intron AkhR - chr2L 6715865 intron AkhR - chr2L_4_6715001 chr2L_6715001 RAL-239 86 chr2L 6765474 6765478 chr2L 21257784 21257788 5 14492310 11.0 4.5 7.8 0.6 14492314 chr2L 6765474 exon CG11321 - chr2L 14011631 intergenic not near genes chr2L 21257788 exon Hr39 + chr2L_5_14010001 chr2L_14010001 RAL-239 87 chr2L 6771984 6772021 chr2L 6772071 6772089 5 78 3.5 1.5 2.5 1.4 105 chr2L 6771984 intron CG11321 - chr2L 6772036 intron CG11321 - chr2L 6772089 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-239 88 chr2L 6850399 6850409 chr2L 6850482 6850487 4 82 0.5 4.0 2.2 1.2 88 chr2L 6850399 intergenic not near genes chr2L 6850443 intergenic not near genes chr2L 6850487 intergenic not near genes chr2L_4_6850001 chr2L_6850001 RAL-239 89 chr2L 6950161 6950190 chr2L 6950366 6950381 7 203 3.0 2.0 2.5 2.0 220 chr2L 6950161 5` UTR Gas41 - chr2L 6950271 intergenic Gas41 -,SA + chr2L 6950381 intergenic SA +,Gas41 - chr2L_7_6950001 chr2L_6950001 RAL-239 90 chr2L 7005240 7005254 chr2L 7005336 7005350 4 96 1.0 2.0 1.5 1.6 110 chr2L 7005240 intron uif - chr2L 7005295 intron uif - chr2L 7005350 intron uif - chr2L_4_7005001 chr2L_7005001 RAL-239 91 chr2L 7115002 7115030 chr2L 7115131 7115138 6 125 0.5 1.5 1.0 3.0 136 chr2L 7115002 intron Pvf3 - chr2L 7115070 intron Pvf3 - chr2L 7115138 intron Pvf3 - chr2L_6_7115001 chr2L_7115001 RAL-239 92 chr2L 7165781 7165806 chr2L 7165862 7165887 6 81 2.5 1.0 1.8 2.1 106 chr2L 7165781 intergenic not near genes chr2L 7165834 intergenic not near genes chr2L 7165887 intergenic not near genes chr2L_6_7165001 chr2L_7165001 RAL-239 93 chr2L 7249622 7249650 chr2L 7249705 7249730 11 80 3.5 1.5 2.5 3.1 108 chr2L 7249622 intergenic Ndae1 - chr2L 7249676 intergenic Ndae1 - chr2L 7249730 intergenic Ndae1 - chr2L_11_7245001 chr2L_7245001 RAL-239 94 chr2L 7337005 7337026 chr2L 7337082 7337101 7 74 1.0 4.0 2.5 2.0 96 chr2L 7337005 intron Wnt6 + chr2L 7337053 intron Wnt6 + chr2L 7337101 intron Wnt6 + chr2L_7_7335001 chr2L_7335001 RAL-239 95 chr2L 7343325 7343354 chr2L 7350440 7350470 roo 9 7116 3.5 5.0 4.2 1.7 7145 chr2L 7343325 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-239 96 chr2L 7356174 7356198 chr2L 7356253 7356277 4 79 1.0 1.0 1.0 2.0 103 chr2L 7356174 intergenic not near genes chr2L 7356226 intergenic not near genes chr2L 7356277 intergenic not near genes chr2L_4_7355001 chr2L_7355001 RAL-239 97 chr2L 7399310 7399333 chr2L 7399683 7399706 6 372 1.0 2.5 1.8 2.1 396 chr2L 7399310 intergenic not near genes chr2L 7399508 intergenic not near genes chr2L 7399706 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-239 98 chr2L 7489696 7489716 chr2L 7489785 7489805 4 89 1.5 0.5 1.0 2.0 109 chr2L 7489696 intron Ziz - chr2L 7489750 intron Ziz - chr2L 7489805 intron Ziz - chr2L_4_7485001 chr2L_7485001 RAL-239 99 chr2L 7502738 7502764 chr2L 7502811 7502840 8 70 3.0 4.0 3.5 1.8 102 chr2L 7502738 intron RapGAP1 - chr2L 7502789 intron RapGAP1 - chr2L 7502840 intron RapGAP1 - chr2L_8_7500001 chr2L_7500001 RAL-239 100 chr2L 7579891 7579894 chr2L 7579973 7579976 4 82 1.5 1.0 1.2 1.8 85 chr2L 7579891 intergenic not near genes chr2L 7579934 intergenic not near genes chr2L 7579976 intergenic not near genes chr2L_4_7575001 chr2L_7575001 RAL-239 101 chr2L 7579897 7579923 chr2L 7579971 7580005 8 78 1.5 1.0 1.2 3.6 108 chr2L 7579897 intergenic not near genes chr2L 7579951 intergenic not near genes chr2L 7580005 intergenic not near genes chr2L_8_7575001 chr2L_7575001 RAL-239 102 chr2L 7608739 7608771 chr2L 7608932 7608964 7 193 1.5 3.0 2.2 2.2 225 chr2L 7608739 intron CG6739 + chr2L 7608852 intron CG6739 + chr2L 7608964 intron CG6739 + chr2L_7_7605001 chr2L_7605001 RAL-239 103 chr2L 7653048 7653059 chr2L 7653142 7653153 5 94 4.5 0.0 2.2 1.6 105 chr2L 7653048 intron Slob - chr2L 7653100 intron Slob - chr2L 7653153 intron Slob - chr2L_5_7650001 chr2L_7650001 RAL-239 104 chr2L 7655404 7655425 chr2L 7655494 7655515 9 89 1.5 3.5 2.5 2.6 111 chr2L 7655404 intron Slob - chr2L 7655460 intron Slob - chr2L 7655515 intron Slob - chr2L_9_7655001 chr2L_7655001 RAL-239 105 chr2L 7977096 7977111 chr2L 7984072 7984086 297 5 6976 2.5 3.0 2.8 1.3 6990 chr2L 7977096 intron Snoo - chr2L 7980591 intron Snoo - chr2L 7984086 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-239 106 chr2L 8013616 8013633 chr2L 8018820 8018837 copia 6 5204 0.0 0.0 0.0 6.0 5221 chr2L 8013616 intron Tg + chr2L 8016226 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-239 107 chr2L 8128035 8128059 chr2L 8128118 8128143 9 81 1.5 1.0 1.2 4.1 108 chr2L 8128035 intron CG8668 + chr2L 8128089 intron CG8668 + chr2L 8128143 intron CG8668 + chr2L_9_8125001 chr2L_8125001 RAL-239 108 chr2L 8258167 8258197 chr2L 8258264 8258294 6 97 1.5 1.0 1.2 2.7 127 chr2L 8258167 intergenic Btk29A -,mir-2b-1 - chr2L 8258230 intergenic Btk29A -,mir-2b-1 - chr2L 8258294 intergenic Btk29A -,mir-2b-1 - chr2L_6_8255001 chr2L_8255001 RAL-239 109 chr2L 8277855 8277867 chr2L 8277935 8277947 4 80 0.0 0.0 0.0 4.0 92 chr2L 8277855 intron Btk29A - chr2L 8277901 intron Btk29A - chr2L 8277947 intron Btk29A - chr2L_4_8275001 chr2L_8275001 RAL-239 110 chr2L 8604977 8604999 chr2L 8605075 8605097 4 98 2.5 3.0 2.8 1.1 120 chr2L 8604977 intron Sema-1a + chr2L 8605037 intron Sema-1a + chr2L 8605097 intron Sema-1a + chr2L_4_8605001 chr2L_8605001 RAL-239 111 chr2L 8640169 8640200 chr2L 8640250 8640281 7 81 5.0 2.0 3.5 1.6 112 chr2L 8640169 intron Sema-1a + chr2L 8640225 intron Sema-1a + chr2L 8640281 intron Sema-1a + chr2L_7_8640001 chr2L_8640001 RAL-239 112 chr2L 8719212 8719233 chr2L 8719288 8719309 5 75 1.5 0.0 0.8 2.8 97 chr2L 8719212 intron raw - chr2L 8719260 intron raw - chr2L 8719309 intron raw - chr2L_5_8715001 chr2L_8715001 RAL-239 113 chr2L 8723114 8723147 chr2L 8731491 8731524 Tirant 4 8377 2.0 3.5 2.8 1.1 8410 chr2L 8723114 intron raw - chr2L 8727319 intron raw - chr2L 8731524 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-239 114 chr2L 8910722 8910740 chr2L 8910813 8910831 8 91 1.5 1.5 1.5 3.2 109 chr2L 8910722 intron CG34398 + chr2L 8910776 intron CG34398 + chr2L 8910831 intron CG34398 + chr2L_8_8910001 chr2L_8910001 RAL-239 115 chr2L 9000283 9000304 chr2L 9007791 9007811 roo 8 7509 2.5 4.0 3.2 1.9 7528 chr2L 9000283 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007811 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-239 116 chr2L 9040891 9040907 chr2L 9040966 9040983 4 75 4.5 1.5 3.0 1.0 92 chr2L 9040891 intergenic not near genes chr2L 9040937 intergenic not near genes chr2L 9040983 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-239 117 chr2L 9084336 9084339 chr2L 16217660 16217660 6 7133322 9.5 15.0 12.2 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-239 118 chr2L 9096075 9096106 chr2L 9096195 9096220 15 119 6.0 4.5 5.2 2.4 145 chr2L 9096075 intergenic not near genes chr2L 9096148 intergenic not near genes chr2L 9096220 intergenic not near genes chr2L_15_9095001 chr2L_9095001 RAL-239 119 chr2L 9114101 9114130 chr2L 9114180 9114204 8 78 1.0 1.5 1.2 3.6 103 chr2L 9114101 intergenic not near genes chr2L 9114152 intergenic not near genes chr2L 9114204 intergenic not near genes chr2L_8_9110001 chr2L_9110001 RAL-239 120 chr2L 9202077 9202089 chr2L 9202132 9202136 5 62 3.5 0.5 2.0 1.7 59 chr2L 9202077 intron tai + chr2L 9202106 intron tai + chr2L 9202136 intron tai + chr2L_5_9200001 chr2L_9200001 RAL-239 121 chr2L 9287331 9287354 chr2L 9287424 9287451 11 95 1.0 3.5 2.2 3.4 120 chr2L 9287331 intron Ggamma30A + chr2L 9287391 intron Ggamma30A + chr2L 9287451 intron Ggamma30A + chr2L_11_9285001 chr2L_9285001 RAL-239 122 chr2L 9290784 9290799 chr2L 9290860 9290864 6 75 0.0 0.5 0.2 5.0 80 chr2L 9290784 intron Ggamma30A + chr2L 9290824 intron Ggamma30A + chr2L 9290864 intron Ggamma30A + chr2L_6_9290001 chr2L_9290001 RAL-239 123 chr2L 9297377 9297401 chr2L 9297454 9297477 5 77 1.5 3.5 2.5 1.4 100 chr2L 9297377 3` UTR Ggamma30A + chr2L 9297427 3` UTR Ggamma30A + chr2L 9297477 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-239 124 chr2L 9385121 9385150 chr2L 9385210 9385240 6 90 2.0 2.0 2.0 2.0 119 chr2L 9385121 intron Shawl - chr2L 9385180 intron Shawl - chr2L 9385240 intron Shawl - chr2L_6_9385001 chr2L_9385001 RAL-239 125 chr2L 9388422 9388434 chr2L 9389044 9389056 5 622 4.5 1.5 3.0 1.2 634 chr2L 9388422 intron,intron Shawl -,Aldh + chr2L 9388739 intron,intron Shawl -,Aldh + chr2L 9389056 intron,intron Shawl -,Aldh + chr2L_5_9385001 chr2L_9385001 RAL-239 126 chr2L 9393496 9393529 chr2L 9396463 9396496 jockey 8 2965 2.0 0.5 1.2 3.6 3000 chr2L 9393496 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396496 intron Shawl - chr2L_8_9390001 chr2L_9390001 RAL-239 127 chr2L 9454979 9454998 chr2L 9455081 9455100 5 102 1.5 0.0 0.8 2.8 121 chr2L 9454979 intron numb + chr2L 9455040 intron numb + chr2L 9455100 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-239 128 chr2L 9460756 9460769 chr2L 9460842 9460853 5 85 3.5 0.0 1.8 1.8 97 chr2L 9460756 intron numb + chr2L 9460804 intron numb + chr2L 9460853 intron numb + chr2L_5_9460001 chr2L_9460001 RAL-239 129 chr2L 9466411 9466439 chr2L 9466492 9466492 6 73 4.0 4.0 4.0 1.2 81 chr2L 9466411 intergenic not near genes chr2L 9466452 intergenic not near genes chr2L 9466492 intergenic not near genes chr2L_6_9465001 chr2L_9465001 RAL-239 130 chr2L 9506427 9506451 chr2L 9506577 9506600 5 150 0.0 2.0 1.0 2.5 173 chr2L 9506427 intron CG33298 + chr2L 9506514 intron CG33298 + chr2L 9506600 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-239 131 chr2L 9730983 9730986 chr2L 9731066 9731069 4 83 0.0 0.0 0.0 4.0 86 chr2L 9730983 intron Nckx30C - chr2L 9731026 intron Nckx30C - chr2L 9731069 intron Nckx30C - chr2L_4_9730001 chr2L_9730001 RAL-239 132 chr2L 9864515 9864536 chr2L 9866120 9866137 4 1602 15.0 18.0 16.5 0.2 1622 chr2L 9864515 intron nAChRalpha6 - chr2L 9865326 intron nAChRalpha6 - chr2L 9866137 intron nAChRalpha6 - chr2L_4_9865001 chr2L_9865001 RAL-239 133 chr2L 9892505 9892524 chr2L 9892581 9892600 6 76 2.5 5.0 3.8 1.2 95 chr2L 9892505 intron mtDNA-helicase - chr2L 9892552 intron mtDNA-helicase - chr2L 9892600 intron mtDNA-helicase - chr2L_6_9890001 chr2L_9890001 RAL-239 134 chr2L 9960677 9960711 chr2L 9960833 9960868 10 157 0.5 4.0 2.2 3.1 191 chr2L 9960677 3` UTR CG5850 - chr2L 9960772 3` UTR CG5850 - chr2L 9960868 3` UTR CG5850 - chr2L_10_9960001 chr2L_9960001 RAL-239 135 chr2L 9973726 9973758 chr2L 9980845 9980871 HMS-Beagle 14 7115 4.5 4.0 4.2 2.7 7145 chr2L 9973726 intergenic not near genes chr2L 9977298 intergenic not near genes chr2L 9980871 intergenic not near genes chr2L_14_9975001 chr2L_9975001 RAL-239 136 chr2L 9986351 9986375 chr2L 9986444 9986459 7 93 5.0 3.0 4.0 1.4 108 chr2L 9986351 intron bib + chr2L 9986405 intron bib + chr2L 9986459 intron bib + chr2L_7_9985001 chr2L_9985001 RAL-239 137 chr2L 10051731 10051753 chr2L 10051816 10051837 10 84 2.5 6.0 4.2 1.9 106 chr2L 10051731 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051837 5` UTR CR44874 + chr2L_10_10050001 chr2L_10050001 RAL-239 138 chr2L 10078122 10078155 chr2L 10078280 10078311 10 156 1.0 4.5 2.8 2.6 189 chr2L 10078122 intron CG44153 - chr2L 10078216 intron CG44153 - chr2L 10078311 intron CG44153 - chr2L_10_10075001 chr2L_10075001 RAL-239 139 chr2L 10095632 10095662 chr2L 10095712 10095739 4 74 1.5 1.0 1.2 1.8 107 chr2L 10095632 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095739 intron CG44153 - chr2L_4_10095001 chr2L_10095001 RAL-239 140 chr2L 10153205 10153238 chr2L 10153284 10153317 20 79 5.0 2.5 3.8 4.2 112 chr2L 10153205 intron,exon CG44153 -,CG4839 + chr2L 10153261 intron,intron CG44153 -,CG4839 + chr2L 10153317 intron,intron CG44153 -,CG4839 + chr2L_20_10150001 chr2L_10150001 RAL-239 141 chr2L 10156322 10156343 chr2L 10163792 10163813 blood 7 7469 4.5 3.0 3.8 1.5 7491 chr2L 10156322 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163813 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-239 142 chr2L 10490275 10490307 chr2L 10490357 10490388 8 81 1.0 3.0 2.0 2.7 113 chr2L 10490275 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490388 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_8_10490001 chr2L_10490001 RAL-239 143 chr2L 10563910 10563948 chr2L 10564003 10564041 6 93 0.5 2.0 1.2 2.7 131 chr2L 10563910 intron Trim9 + chr2L 10563976 intron Trim9 + chr2L 10564041 intron Trim9 + chr2L_6_10560001 chr2L_10560001 RAL-239 144 chr2L 10572703 10572731 chr2L 10572783 10572812 9 81 1.5 2.5 2.0 3.0 109 chr2L 10572703 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572812 intron Trim9 + chr2L_9_10570001 chr2L_10570001 RAL-239 145 chr2L 10580793 10580820 chr2L 10580874 10580894 5 80 4.0 1.5 2.8 1.3 101 chr2L 10580793 intron Trim9 + chr2L 10580844 intron Trim9 + chr2L 10580894 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-239 146 chr2L 10704917 10704920 chr2L 10705012 10705015 4 95 6.0 0.0 3.0 1.0 98 chr2L 10704917 intron,3` UTR Lip2 -,CG6415 + chr2L 10704966 intron Lip2 - chr2L 10705015 intron Lip2 - chr2L_4_10700001 chr2L_10700001 RAL-239 147 chr2L 10705459 10705479 chr2L 10705531 10705561 11 77 2.0 2.5 2.2 3.4 102 chr2L 10705459 exon Lip2 - chr2L 10705510 intron Lip2 - chr2L 10705561 intron Lip2 - chr2L_11_10705001 chr2L_10705001 RAL-239 148 chr2L 10813680 10813705 chr2L 10813832 10813857 4 152 1.0 0.5 0.8 2.2 177 chr2L 10813680 intron Nos - chr2L 10813768 intron Nos - chr2L 10813857 intron Nos - chr2L_4_10810001 chr2L_10810001 RAL-239 149 chr2L 10862846 10862862 chr2L 10864459 10864475 Rt1c 4 1612 6.5 5.5 6.0 0.6 1629 chr2L 10862846 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864475 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-239 150 chr2L 10862867 10862876 chr2L 10864458 10864490 Rt1c 5 1608 4.5 5.5 5.0 0.8 1623 chr2L 10862867 3` UTR CR43807 - chr2L 10863678 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-239 151 chr2L 10946952 10946973 chr2L 10956167 10956188 roo 6 9214 1.5 5.0 3.2 1.4 9236 chr2L 10946952 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-239 152 chr2L 11224058 11224091 chr2L 11224169 11224186 6 108 1.0 0.5 0.8 3.3 128 chr2L 11224058 intron ab + chr2L 11224122 intron ab + chr2L 11224186 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-239 153 chr2L 11246760 11246795 chr2L 11246859 11246894 5 99 1.0 0.0 0.5 3.3 134 chr2L 11246760 intron ab + chr2L 11246827 intron ab + chr2L 11246894 intron ab + chr2L_5_11245001 chr2L_11245001 RAL-239 154 chr2L 11614069 11614085 chr2L 11615550 11615559 hopper2 7 1487 2.0 3.5 2.8 1.8 1490 chr2L 11614069 intron kek2 + chr2L 11614814 intron kek2 + chr2L 11615559 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-239 155 chr2L 11657990 11658002 chr2L 11658075 11658087 4 85 2.5 4.0 3.2 1.0 97 chr2L 11657990 3` UTR CG43167 + chr2L 11658038 intergenic CG43167 + chr2L 11658087 intergenic CG43167 + chr2L_4_11655001 chr2L_11655001 RAL-239 156 chr2L 11713505 11713540 chr2L 11720973 11721008 blood 8 7468 2.5 2.5 2.5 2.3 7503 chr2L 11713505 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-239 157 chr2L 11770597 11770623 chr2L 11770684 11770710 17 86 5.5 2.0 3.8 3.5 113 chr2L 11770597 intergenic not near genes chr2L 11770654 intergenic not near genes chr2L 11770710 intergenic not near genes chr2L_17_11770001 chr2L_11770001 RAL-239 158 chr2L 12255470 12255502 chr2L 12256186 12256218 5 715 4.5 0.5 2.5 1.4 748 chr2L 12255470 intron aret + chr2L 12255844 intron aret + chr2L 12256218 intron aret + chr2L_5_12255001 chr2L_12255001 RAL-239 159 chr2L 12345408 12345438 chr2L 12345486 12345499 9 76 3.5 3.0 3.2 2.1 91 chr2L 12345408 intron bru-2 + chr2L 12345454 intron bru-2 + chr2L 12345499 intron bru-2 + chr2L_9_12345001 chr2L_12345001 RAL-239 160 chr2L 12405289 12405308 chr2L 12405366 12405382 4 76 1.5 4.5 3.0 1.0 93 chr2L 12405289 intron vir-1 - chr2L 12405336 intron vir-1 - chr2L 12405382 intron vir-1 - chr2L_4_12405001 chr2L_12405001 RAL-239 161 chr2L 12529229 12529259 chr2L 12529381 12529410 7 151 0.5 2.5 1.5 2.8 181 chr2L 12529229 intron bun - chr2L 12529320 intron bun - chr2L 12529410 intron bun - chr2L_7_12525001 chr2L_12525001 RAL-239 162 chr2L 12625161 12625190 chr2L 12625248 12625282 9 92 1.0 1.0 1.0 4.5 121 chr2L 12625161 intron,intron nub +,Ref2 - chr2L 12625222 intron,intron nub +,Ref2 - chr2L 12625282 intron,intron nub +,Ref2 - chr2L_9_12625001 chr2L_12625001 RAL-239 163 chr2L 12739174 12739200 chr2L 12743954 12743980 Doc 10 4780 3.5 2.0 2.8 2.6 4806 chr2L 12739174 exon MRP + chr2L 12741577 intron MRP + chr2L 12743980 exon MRP + chr2L_10_12740001 chr2L_12740001 RAL-239 164 chr2L 12751309 12751338 chr2L 12751392 12751421 6 83 0.5 2.5 1.5 2.4 112 chr2L 12751309 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-239 165 chr2L 12791612 12791632 chr2L 12795287 12795307 F-element 4 3674 0.5 0.5 0.5 2.7 3695 chr2L 12791612 intergenic not near genes chr2L 12793460 intergenic not near genes chr2L 12795307 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-239 166 chr2L 12861694 12861726 chr2L 12863161 12863193 hobo 8 1467 2.5 3.0 2.8 2.1 1499 chr2L 12861694 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863193 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-239 167 chr2L 12933849 12933882 chr2L 12941316 12941349 blood 10 7466 1.5 4.5 3.0 2.5 7500 chr2L 12933849 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-239 168 chr2L 13144000 13144002 chr2L 13144079 13144080 4 78 7.0 4.0 5.5 0.6 80 chr2L 13144000 intergenic CG16978 - chr2L 13144040 intergenic CG16978 - chr2L 13144080 intergenic CG16978 - chr2L_4_13140001 chr2L_13140001 RAL-239 169 chr2L 13144003 13144031 chr2L 13144072 13144110 17 77 3.0 3.0 3.0 4.2 107 chr2L 13144003 intergenic CG16978 - chr2L 13144056 intergenic CG16978 - chr2L 13144110 intergenic CG16978 - chr2L_17_13140001 chr2L_13140001 RAL-239 170 chr2L 13152236 13152259 chr2L 13152314 13152337 11 77 3.0 3.5 3.2 2.6 101 chr2L 13152236 intergenic not near genes chr2L 13152286 intergenic not near genes chr2L 13152337 intergenic not near genes chr2L_11_13150001 chr2L_13150001 RAL-239 171 chr2L 13211154 13211172 chr2L 13211241 13211258 6 87 1.0 5.5 3.2 1.4 104 chr2L 13211154 exon CG15482 - chr2L 13211206 exon CG15482 - chr2L 13211258 exon CG15482 - chr2L_6_13210001 chr2L_13210001 RAL-239 172 chr2L 13405651 13405680 chr2L 13410444 13410477 Doc 10 4795 4.0 2.0 3.0 2.5 4826 chr2L 13405651 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410477 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-239 173 chr2L 13449474 13449496 chr2L 13456910 13456923 Quasimodo 5 7434 1.5 2.0 1.8 1.8 7449 chr2L 13449474 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456923 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-239 174 chr2L 13540670 13540700 chr2L 13540747 13540779 6 78 2.5 2.0 2.2 1.9 109 chr2L 13540670 intron B4 - chr2L 13540724 intron B4 - chr2L 13540779 intron,5` UTR B4 -,CG16852 + chr2L_6_13540001 chr2L_13540001 RAL-239 175 chr2L 13683674 13683710 chr2L 13683753 13683789 6 80 3.5 1.5 2.5 1.7 115 chr2L 13683674 intron CG31814 - chr2L 13683732 intron CG31814 - chr2L 13683789 intron CG31814 - chr2L_6_13680001 chr2L_13680001 RAL-239 176 chr2L 13692166 13692190 chr2L 13692239 13692265 4 75 2.5 2.5 2.5 1.1 99 chr2L 13692166 intron CG31814 - chr2L 13692216 intron CG31814 - chr2L 13692265 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-239 177 chr2L 13853096 13853111 chr2L 13862246 13862250 roo 6 9148 4.0 0.5 2.2 1.9 9154 chr2L 13853096 intron CenG1A + chr2L 13857673 intron CenG1A + chr2L 13862250 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-239 178 chr2L 14294572 14294590 chr2L 14294654 14294672 7 82 4.5 1.5 3.0 1.8 100 chr2L 14294572 intron,3` UTR wb +,CR43640 - chr2L 14294622 intron,3` UTR wb +,CR43640 - chr2L 14294672 intron,intron wb +,CR43640 - chr2L_7_14290001 chr2L_14290001 RAL-239 179 chr2L 14301638 14301652 chr2L 14301722 14301735 4 84 2.0 1.0 1.5 1.6 97 chr2L 14301638 intron wb + chr2L 14301686 intron wb + chr2L 14301735 intron wb + chr2L_4_14300001 chr2L_14300001 RAL-239 180 chr2L 14303185 14303218 chr2L 14303260 14303279 8 74 0.5 1.5 1.0 4.0 94 chr2L 14303185 intron wb + chr2L 14303232 intron wb + chr2L 14303279 intron wb + chr2L_8_14300001 chr2L_14300001 RAL-239 181 chr2L 14588389 14588415 chr2L 14588543 14588569 4 154 1.0 1.5 1.2 1.8 180 chr2L 14588389 intergenic CG42680 - chr2L 14588479 intergenic CG42680 - chr2L 14588569 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-239 182 chr2L 14642571 14642596 chr2L 14651733 14651759 roo 6 9163 2.0 3.0 2.5 1.7 9188 chr2L 14642571 intron osp - chr2L 14647165 intron osp - chr2L 14651759 intron osp - chr2L_6_14645001 chr2L_14645001 RAL-239 183 chr2L 14707208 14707239 chr2L 14707327 14707358 4 119 2.0 0.0 1.0 2.0 150 chr2L 14707208 intergenic not near genes chr2L 14707283 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-239 184 chr2L 14781575 14781590 chr2L 14781670 14781691 4 100 1.0 1.0 1.0 2.0 116 chr2L 14781575 intergenic not near genes chr2L 14781633 intergenic not near genes chr2L 14781691 intergenic not near genes chr2L_4_14780001 chr2L_14780001 RAL-239 185 chr2L 14803877 14803913 chr2L 14809080 14809116 copia 7 5201 2.5 4.0 3.2 1.7 5239 chr2L 14803877 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-239 186 chr2L 14831626 14831640 chr2L 14831763 14831776 4 137 1.0 2.0 1.5 1.6 150 chr2L 14831626 intergenic not near genes chr2L 14831701 intergenic not near genes chr2L 14831776 intergenic not near genes chr2L_4_14830001 chr2L_14830001 RAL-239 187 chr2L 14842409 14842443 chr2L 14842493 14842527 5 81 1.5 1.0 1.2 2.3 118 chr2L 14842409 exon CG42682 + chr2L 14842468 intron CG42682 + chr2L 14842527 intron CG42682 + chr2L_5_14840001 chr2L_14840001 RAL-239 188 chr2L 14889954 14889987 chr2L 14890379 14890412 jockey 6 425 2.5 2.0 2.2 1.9 458 chr2L 14889954 intergenic not near genes chr2L 14890183 intergenic not near genes chr2L 14890412 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-239 189 chr2L 14935114 14935146 chr2L 14935271 14935290 5 146 0.5 4.0 2.2 1.6 176 chr2L 14935114 intron CG42313 - chr2L 14935202 intron CG42313 - chr2L 14935290 intron CG42313 - chr2L_5_14935001 chr2L_14935001 RAL-239 190 chr2L 14941609 14941634 chr2L 14941745 14941774 6 139 1.5 2.5 2.0 2.0 165 chr2L 14941609 exon CG42313 - chr2L 14941692 intron CG42313 - chr2L 14941774 intron CG42313 - chr2L_6_14940001 chr2L_14940001 RAL-239 191 chr2L 15021451 15021474 chr2L 15021527 15021550 8 76 1.5 3.0 2.2 2.5 99 chr2L 15021451 intron GABA-B-R1 + chr2L 15021500 intron GABA-B-R1 + chr2L 15021550 intron GABA-B-R1 + chr2L_8_15020001 chr2L_15020001 RAL-239 192 chr2L 15226376 15226396 chr2L 15226452 15226460 5 74 1.0 1.5 1.2 2.3 84 chr2L 15226376 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226460 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-239 193 chr2L 15341791 15341812 chr2L 15341917 15341936 4 124 2.5 3.0 2.8 1.1 145 chr2L 15341791 intergenic not near genes chr2L 15341864 intergenic not near genes chr2L 15341936 intergenic not near genes chr2L_4_15340001 chr2L_15340001 RAL-239 194 chr2L 15375821 15375842 chr2L 15375933 15375954 4 112 1.0 2.0 1.5 1.6 133 chr2L 15375821 intergenic not near genes chr2L 15375888 intergenic not near genes chr2L 15375954 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-239 195 chr2L 15446049 15446077 chr2L 15453518 15453546 blood 5 7467 1.5 0.0 0.8 2.8 7497 chr2L 15446049 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453546 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-239 196 chr2L 15852048 15852078 chr2L 15852132 15852162 6 82 2.5 3.0 2.8 1.6 114 chr2L 15852048 intergenic not near genes chr2L 15852105 intergenic CG13243 + chr2L 15852162 intergenic CG13243 + chr2L_6_15850001 chr2L_15850001 RAL-239 197 chr2L 16059956 16059975 chr2L 16060054 16060072 4 98 1.0 1.5 1.2 1.8 116 chr2L 16059956 intron beat-Ia + chr2L 16060014 intron beat-Ia + chr2L 16060072 intron beat-Ia + chr2L_4_16060001 chr2L_16060001 RAL-239 198 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 16.5 15.0 15.8 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-239 199 chr2L 16153744 16153758 chr2L 16160812 16160826 297 5 7068 4.0 1.5 2.8 1.3 7082 chr2L 16153744 intergenic not near genes chr2L 16157285 intergenic not near genes chr2L 16160826 intergenic not near genes chr2L_5_16155001 chr2L_16155001 RAL-239 200 chr2L 16197117 16197142 chr2L 16197793 16197802 5 673 1.0 2.0 1.5 2.0 685 chr2L 16197117 intergenic not near genes chr2L 16197460 intergenic not near genes chr2L 16197802 intergenic not near genes chr2L_5_16195001 chr2L_16195001 RAL-239 201 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133321 9.5 15.0 12.2 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-239 202 chr2L 16280255 16280283 chr2L 16281426 16281446 1360 6 1169 2.5 4.0 3.2 1.4 1191 chr2L 16280255 intron crp - chr2L 16280850 intron crp - chr2L 16281446 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-239 203 chr2L 16375396 16375419 chr2L 16375486 16375509 4 90 2.5 0.0 1.2 1.8 113 chr2L 16375396 intergenic not near genes chr2L 16375452 intergenic not near genes chr2L 16375509 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-239 204 chr2L 16443996 16444019 chr2L 16444073 16444095 8 76 0.5 0.5 0.5 5.3 99 chr2L 16443996 intron CG5888 - chr2L 16444046 intron CG5888 - chr2L 16444095 intron CG5888 - chr2L_8_16440001 chr2L_16440001 RAL-239 205 chr2L 16492734 16492764 chr2L 16492827 16492857 6 93 2.0 2.5 2.2 1.9 123 chr2L 16492734 intron Tpr2 + chr2L 16492796 intron Tpr2 + chr2L 16492857 intron Tpr2 + chr2L_6_16490001 chr2L_16490001 RAL-239 206 chr2L 16504099 16504130 chr2L 16504331 16504363 7 233 1.5 1.5 1.5 2.8 264 chr2L 16504099 intron Tpr2 + chr2L 16504231 intron Tpr2 + chr2L 16504363 intron Tpr2 + chr2L_7_16500001 chr2L_16500001 RAL-239 207 chr2L 16562277 16562290 chr2L 16562360 16562373 8 81 4.5 4.5 4.5 1.5 96 chr2L 16562277 intron CG42389 + chr2L 16562325 intron CG42389 + chr2L 16562373 intron CG42389 + chr2L_8_16560001 chr2L_16560001 RAL-239 208 chr2L 16654456 16654474 chr2L 16654572 16654590 4 116 1.5 2.0 1.8 1.4 134 chr2L 16654456 intron CG42389 + chr2L 16654523 intron CG42389 + chr2L 16654590 intron CG42389 + chr2L_4_16650001 chr2L_16650001 RAL-239 209 chr2L 16693918 16693941 chr2L 16693999 16694022 5 81 0.5 4.0 2.2 1.6 104 chr2L 16693918 intron grp + chr2L 16693970 intron grp + chr2L 16694022 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-239 210 chr2L 16728926 16728954 chr2L 16729559 16729589 4 634 0.5 0.0 0.2 3.3 663 chr2L 16728926 intergenic not near genes chr2L 16729258 intergenic not near genes chr2L 16729589 intergenic CG31812 + chr2L_4_16725001 chr2L_16725001 RAL-239 211 chr2L 16927542 16927571 chr2L 16928198 16928225 12 649 2.5 0.0 1.2 5.5 683 chr2L 16927542 intergenic not near genes chr2L 16927884 intergenic not near genes chr2L 16928225 intergenic not near genes chr2L_12_16925001 chr2L_16925001 RAL-239 212 chr2L 16958106 16958122 chr2L 16962894 16962910 Doc 4 4788 1.5 3.0 2.2 1.2 4804 chr2L 16958106 intergenic not near genes chr2L 16960508 intergenic not near genes chr2L 16962910 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-239 213 chr2L 17005415 17005435 chr2L 17005510 17005532 5 96 3.0 1.5 2.2 1.6 117 chr2L 17005415 intergenic not near genes chr2L 17005474 intergenic not near genes chr2L 17005532 intergenic not near genes chr2L_5_17005001 chr2L_17005001 RAL-239 214 chr2L 17238849 17238863 chr2L 17238929 17238938 6 82 0.0 0.5 0.2 5.0 89 chr2L 17238849 intron beat-IIIc - chr2L 17238894 intron beat-IIIc - chr2L 17238938 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-239 215 chr2L 17273188 17273229 chr2L 17277971 17278001 F-element 4 4780 2.0 1.5 1.8 1.4 4813 chr2L 17273188 intergenic not near genes chr2L 17275594 intergenic not near genes chr2L 17278001 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-239 216 chr2L 17380453 17380481 chr2L 17380722 17380741 10 268 0.5 2.5 1.5 4.0 288 chr2L 17380453 intron Lrch - chr2L 17380597 intron Lrch - chr2L 17380741 intron Lrch - chr2L_10_17380001 chr2L_17380001 RAL-239 217 chr2L 17432939 17432975 chr2L 17433035 17433071 10 93 1.0 0.5 0.8 5.6 132 chr2L 17432939 5` UTR Dif - chr2L 17433005 5` UTR Dif - chr2L 17433071 5` UTR Dif - chr2L_10_17430001 chr2L_17430001 RAL-239 218 chr2L 17791636 17791668 chr2L 17791713 17791743 10 72 1.5 1.0 1.2 4.5 107 chr2L 17791636 intron CadN2 - chr2L 17791690 intron CadN2 - chr2L 17791743 intron CadN2 - chr2L_10_17790001 chr2L_17790001 RAL-239 219 chr2L 17819923 17819945 chr2L 17825125 17825147 copia 4 5202 1.5 1.5 1.5 1.6 5224 chr2L 17819923 intron CadN2 - chr2L 17822535 intron CadN2 - chr2L 17825147 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-239 220 chr2L 17874735 17874757 chr2L 17874837 17874859 6 102 6.5 0.5 3.5 1.3 124 chr2L 17874735 intron CadN2 - chr2L 17874797 intron CadN2 - chr2L 17874859 intron CadN2 - chr2L_6_17870001 chr2L_17870001 RAL-239 221 chr2L 17880001 17880031 chr2L 17880088 17880118 8 87 3.5 2.5 3.0 2.0 117 chr2L 17880001 intergenic not near genes chr2L 17880060 intergenic not near genes chr2L 17880118 intergenic not near genes chr2L_8_17880001 chr2L_17880001 RAL-239 222 chr2L 17897217 17897253 chr2L 17897298 17897333 6 80 1.0 3.0 2.0 2.0 116 chr2L 17897217 intergenic not near genes chr2L 17897275 intergenic not near genes chr2L 17897333 intergenic not near genes chr2L_6_17895001 chr2L_17895001 RAL-239 223 chr2L 17933533 17933554 chr2L 17933923 17933945 8 390 1.5 2.5 2.0 2.7 412 chr2L 17933533 intergenic not near genes chr2L 17933739 intergenic not near genes chr2L 17933945 intergenic not near genes chr2L_8_17930001 chr2L_17930001 RAL-239 224 chr2L 17943349 17943384 chr2L 17943620 17943655 5 270 3.0 1.5 2.2 1.6 306 chr2L 17943349 intergenic not near genes chr2L 17943502 intergenic not near genes chr2L 17943655 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-239 225 chr2L 18051875 18051895 chr2L 18061022 18061029 roo 4 9144 3.0 0.5 1.8 1.4 9154 chr2L 18051875 intron rdo + chr2L 18056452 intron rdo + chr2L 18061029 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-239 226 chr2L 18111242 18111263 chr2L 18111333 18111353 8 90 3.0 2.0 2.5 2.3 111 chr2L 18111242 intergenic not near genes chr2L 18111298 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_8_18110001 chr2L_18110001 RAL-239 227 chr2L 18231142 18231164 chr2L 18231225 18231249 7 84 2.5 2.0 2.2 2.2 107 chr2L 18231142 intron CG42750 - chr2L 18231196 intron CG42750 - chr2L 18231249 intron CG42750 - chr2L_7_18230001 chr2L_18230001 RAL-239 228 chr2L 18254812 18254840 chr2L 18254912 18254940 7 100 1.5 0.5 1.0 3.5 128 chr2L 18254812 intron CG42750 - chr2L 18254876 intron CG42750 - chr2L 18254940 intron CG42750 - chr2L_7_18250001 chr2L_18250001 RAL-239 229 chr2L 18408029 18408050 chr2L 18412813 18412833 Doc 6 4784 2.5 0.0 1.2 2.7 4804 chr2L 18408029 intergenic not near genes chr2L 18410431 intergenic not near genes chr2L 18412833 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-239 230 chr2L 18812558 18812571 chr2L 18812821 18812826 5 260 2.0 2.5 2.2 1.6 268 chr2L 18812558 intergenic CG17325 +,CG42305 + chr2L 18812692 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812826 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-239 231 chr2L 18903094 18903115 chr2L 18903191 18903212 6 97 2.5 1.0 1.8 2.1 118 chr2L 18903094 intergenic not near genes chr2L 18903153 intergenic not near genes chr2L 18903212 intergenic not near genes chr2L_6_18900001 chr2L_18900001 RAL-239 232 chr2L 19024096 19024097 chr2L 21768291 21768291 9 2744194 15.5 17.5 16.5 0.5 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_9_20395001 chr2L_20395001 RAL-239 233 chr2L 19309619 19309640 chr2L 19309699 19309720 5 80 2.0 3.5 2.8 1.3 101 chr2L 19309619 intergenic not near genes chr2L 19309670 intergenic not near genes chr2L 19309720 intergenic not near genes chr2L_5_19305001 chr2L_19305001 RAL-239 234 chr2L 19340199 19340227 chr2L 19340276 19340303 10 72 4.0 3.5 3.8 2.1 104 chr2L 19340199 exon dnt - chr2L 19340251 exon dnt - chr2L 19340303 exon dnt - chr2L_10_19340001 chr2L_19340001 RAL-239 235 chr2L 19378339 19378371 chr2L 19378422 19378454 6 82 1.0 2.0 1.5 2.4 115 chr2L 19378339 intergenic not near genes chr2L 19378396 intergenic not near genes chr2L 19378454 intergenic not near genes chr2L_6_19375001 chr2L_19375001 RAL-239 236 chr2L 19384009 19384020 chr2L 19384091 19384096 4 81 3.5 4.5 4.0 0.8 87 chr2L 19384009 exon fon - chr2L 19384052 exon fon - chr2L 19384096 exon fon - chr2L_4_19380001 chr2L_19380001 RAL-239 237 chr2L 19544592 19544613 chr2L 19544666 19544690 7 74 9.0 5.5 7.2 0.9 98 chr2L 19544592 exon ref(2)P + chr2L 19544641 exon ref(2)P + chr2L 19544690 exon ref(2)P + chr2L_7_19540001 chr2L_19540001 RAL-239 238 chr2L 19544619 19544624 chr2L 19544664 19544682 4 52 8.0 6.0 7.0 0.5 63 chr2L 19544619 exon ref(2)P + chr2L 19544650 exon ref(2)P + chr2L 19544682 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-239 239 chr2L 19560841 19560858 chr2L 19560921 19560938 6 80 2.5 1.0 1.8 2.1 97 chr2L 19560841 intron Tep5 + chr2L 19560890 exon Tep5 + chr2L 19560938 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-239 240 chr2L 19561343 19561368 chr2L 19561484 19561509 4 141 2.0 2.0 2.0 1.3 166 chr2L 19561343 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561509 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-239 241 chr2L 19562058 19562083 chr2L 19562143 19562168 14 85 1.5 4.5 3.0 3.5 110 chr2L 19562058 exon Tep5 + chr2L 19562113 intron Tep5 + chr2L 19562168 exon Tep5 + chr2L_14_19560001 chr2L_19560001 RAL-239 242 chr2L 19620092 19620132 chr2L 19621081 19621121 jockey 13 987 2.0 3.0 2.5 3.7 1029 chr2L 19620092 intron Lar + chr2L 19620606 intron Lar + chr2L 19621121 intron Lar + chr2L_13_19620001 chr2L_19620001 RAL-239 243 chr2L 19638550 19638567 chr2L 19638633 19638655 5 86 1.5 2.0 1.8 1.8 105 chr2L 19638550 intron Lar + chr2L 19638602 intron Lar + chr2L 19638655 intron Lar + chr2L_5_19635001 chr2L_19635001 RAL-239 244 chr2L 19697138 19697164 chr2L 19697231 19697257 12 92 1.5 4.0 2.8 3.2 119 chr2L 19697138 intron Lar + chr2L 19697198 intron Lar + chr2L 19697257 intron Lar + chr2L_12_19695001 chr2L_19695001 RAL-239 245 chr2L 19703537 19703569 chr2L 19712673 19712705 roo 8 9134 4.0 2.0 3.0 2.0 9168 chr2L 19703537 intron Lar + chr2L 19708121 intron Lar + chr2L 19712705 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-239 246 chr2L 19712697 19712720 chr2L 19712770 19712770 9 75 2.5 1.0 1.8 3.2 73 chr2L 19712697 intron Lar + chr2L 19712734 intron Lar + chr2L 19712770 intron Lar + chr2L_9_19710001 chr2L_19710001 RAL-239 247 chr2L 19737354 19737382 chr2L 19740823 19740850 1360 11 3466 4.5 4.0 4.2 2.1 3496 chr2L 19737354 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740850 intergenic not near genes chr2L_11_19735001 chr2L_19735001 RAL-239 248 chr2L 19762812 19762838 chr2L 19763053 19763080 pogo 4 242 1.0 1.0 1.0 2.0 268 chr2L 19762812 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763080 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-239 249 chr2L 19824413 19824436 chr2L 19824496 19824519 5 83 0.0 1.5 0.8 2.8 106 chr2L 19824413 intron sick + chr2L 19824466 intron sick + chr2L 19824519 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-239 250 chr2L 19837279 19837302 chr2L 19837359 19837382 8 80 2.5 3.0 2.8 2.1 103 chr2L 19837279 intron sick + chr2L 19837330 intron sick + chr2L 19837382 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-239 251 chr2L 20015950 20015983 chr2L 20016073 20016102 14 120 1.5 3.5 2.5 4.0 152 chr2L 20015950 intron CG43861 - chr2L 20016026 intron CG43861 - chr2L 20016102 intron CG43861 - chr2L_14_20015001 chr2L_20015001 RAL-239 252 chr2L 20269609 20269628 chr2L 20269832 20269851 5 223 3.0 2.5 2.8 1.3 242 chr2L 20269609 intergenic not near genes chr2L 20269730 intergenic not near genes chr2L 20269851 intergenic not near genes chr2L_5_20265001 chr2L_20265001 RAL-239 253 chr2L 20271261 20271270 chr2L 20271344 20271351 4 82 4.0 2.5 3.2 1.0 90 chr2L 20271261 intergenic not near genes chr2L 20271306 intergenic not near genes chr2L 20271351 intergenic not near genes chr2L_4_20270001 chr2L_20270001 RAL-239 254 chr2L 20272111 20272144 chr2L 20282821 20282855 copia 5 10711 2.5 4.0 3.2 1.2 10744 chr2L 20272111 intergenic not near genes chr2L 20277483 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-239 255 chr2L 20298832 20298853 chr2L 20298915 20298936 4 82 0.5 2.0 1.2 1.8 104 chr2L 20298832 intergenic not near genes chr2L 20298884 intergenic not near genes chr2L 20298936 intergenic not near genes chr2L_4_20295001 chr2L_20295001 RAL-239 256 chr2L 20372228 20372246 chr2L 20372469 20372487 pogo 4 241 0.0 2.0 1.0 2.0 259 chr2L 20372228 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372487 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-239 257 chr2L 20576217 20576236 chr2L 20583686 20583705 blood 4 7467 4.0 2.0 3.0 1.0 7488 chr2L 20576217 intergenic CR45347 + chr2L 20579961 intergenic not near genes chr2L 20583705 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-239 258 chr2L 20623920 20623944 chr2L 20623997 20624023 6 78 3.0 1.0 2.0 2.0 103 chr2L 20623920 intron CR44909 - chr2L 20623972 intron CR44909 - chr2L 20624023 intron CR44909 - chr2L_6_20620001 chr2L_20620001 RAL-239 259 chr2L 20671742 20671757 chr2L 20671818 20671851 4 84 7.0 1.5 4.2 0.8 109 chr2L 20671742 intron CG31678 - chr2L 20671796 intron CG31678 - chr2L 20671851 intron CG31678 - chr2L_4_20670001 chr2L_20670001 RAL-239 260 chr2L 20821499 20821520 chr2L 20821647 20821667 9 148 5.5 1.5 3.5 2.0 168 chr2L 20821499 intergenic not near genes chr2L 20821583 intergenic not near genes chr2L 20821667 intergenic not near genes chr2L_9_20820001 chr2L_20820001 RAL-239 261 chr2L 20840024 20840059 chr2L 20840236 20840271 12 211 1.0 3.0 2.0 4.0 247 chr2L 20840024 intergenic not near genes chr2L 20840148 intergenic not near genes chr2L 20840271 intergenic CG31676 + chr2L_12_20840001 chr2L_20840001 RAL-239 262 chr2L 20947449 20947463 chr2L 20947526 20947542 8 79 3.0 3.5 3.2 1.9 93 chr2L 20947449 3` UTR CR44606 - chr2L 20947496 3` UTR CR44606 - chr2L 20947542 3` UTR CR44606 - chr2L_8_20945001 chr2L_20945001 RAL-239 263 chr2L 20976649 20976672 chr2L 20981464 20981487 X-element 5 4815 1.5 1.5 1.5 2.0 4838 chr2L 20976649 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981487 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-239 264 chr2L 21020271 21020301 chr2L 21023948 21023978 NOF 7 3677 2.5 3.0 2.8 1.8 3707 chr2L 21020271 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023978 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-239 265 chr2L 21041135 21041150 chr2L 21049394 21049410 Tirant 7 8260 1.5 3.5 2.5 2.0 8275 chr2L 21041135 intron CG42238 - chr2L 21045272 intron CG42238 - chr2L 21049410 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-239 266 chr2L 21119282 21119308 chr2L 21119366 21119392 5 82 2.5 1.0 1.8 1.8 110 chr2L 21119282 intron Nhe2 + chr2L 21119337 intron Nhe2 + chr2L 21119392 intron Nhe2 + chr2L_5_21115001 chr2L_21115001 RAL-239 267 chr2L 21152873 21152894 chr2L 21152967 21152988 8 94 3.0 4.0 3.5 1.8 115 chr2L 21152873 intergenic not near genes chr2L 21152930 intergenic not near genes chr2L 21152988 intergenic not near genes chr2L_8_21150001 chr2L_21150001 RAL-239 268 chr2L 21246510 21246534 chr2L 21246604 21246628 5 95 3.5 2.0 2.8 1.3 118 chr2L 21246510 intron Hr39 + chr2L 21246569 intron Hr39 + chr2L 21246628 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-239 269 chr2L 21274259 21274276 chr2L 21274350 21274365 5 90 1.0 2.0 1.5 2.0 106 chr2L 21274259 exon CG8671 + chr2L 21274312 exon CG8671 + chr2L 21274365 exon CG8671 + chr2L_5_21270001 chr2L_21270001 RAL-239 270 chr2L 21355604 21355632 chr2L 21355749 21355777 4 145 1.0 0.5 0.8 2.2 173 chr2L 21355604 intron Tsp39D + chr2L 21355690 intron Tsp39D + chr2L 21355777 intron Tsp39D + chr2L_4_21355001 chr2L_21355001 RAL-239 271 chr2L 21685790 21685803 chr2L 21685863 21685879 4 75 2.5 1.0 1.8 1.4 89 chr2L 21685790 intron CG31619 + chr2L 21685834 intron CG31619 + chr2L 21685879 intron CG31619 + chr2L_4_21685001 chr2L_21685001 RAL-239 272 chr2L 21819013 21819030 chr2L 21819107 21819125 7 95 1.5 0.5 1.0 3.5 112 chr2L 21819013 intergenic CR44786 + chr2L 21819069 intergenic CR44786 + chr2L 21819125 intergenic CR44786 + chr2L_7_21815001 chr2L_21815001 RAL-239 273 chr2L 21981692 21981714 chr2L 21990857 21990879 roo 4 9165 2.0 4.5 3.2 1.0 9187 chr2L 21981692 exon CG2528 - chr2L 21986286 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-239 274 chr2L 22011916 22011925 chr2L 22011997 22012006 5 81 5.5 2.5 4.0 1.0 90 chr2L 22011916 intergenic not near genes chr2L 22011961 intergenic not near genes chr2L 22012006 intergenic not near genes chr2L_5_22010001 chr2L_22010001 RAL-239 275 chr2L 22077287 22077319 chr2L 22077368 22077400 7 80 1.0 1.0 1.0 3.5 113 chr2L 22077287 intergenic not near genes chr2L 22077344 intergenic not near genes chr2L 22077400 intergenic not near genes chr2L_7_22075001 chr2L_22075001 RAL-239 276 chr2L 22968577 22968585 chr2L 22968671 22968679 4 94 2.5 2.5 2.5 1.1 102 chr2L 22968577 intergenic not near genes chr2L 22968628 intergenic not near genes chr2L 22968679 intergenic not near genes chr2L_4_22965001 chr2L_22965001 RAL-239 277 chr2R 529324 529357 chr2R 537949 537980 Max-element 4 8624 1.5 2.0 1.8 1.4 8656 chr2R 529324 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537980 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-239 278 chr2R 552751 552788 chr2R 553969 553998 1360 9 1209 1.0 2.5 1.8 3.2 1247 chr2R 552751 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553998 intron CG40378 + chr2R_9_550001 chr2R_550001 RAL-239 279 chr2R 1365864 1365889 chr2R 1365976 1366001 5 106 2.0 3.5 2.8 1.3 137 chr2R 1365864 intron l(2)41Ab + chr2R 1365932 intron l(2)41Ab + chr2R 1366001 intron l(2)41Ab + chr2R_5_1365001 chr2R_1365001 RAL-239 280 chr2R 2015141 2015163 chr2R 2015218 2015240 4 76 0.5 0.5 0.5 2.7 99 chr2R 2015141 intron CG17684 - chr2R 2015190 intron CG17684 - chr2R 2015240 intron CG17684 - chr2R_4_2015001 chr2R_2015001 RAL-239 281 chr2R 2508311 2508338 chr2R 2508448 2508476 9 138 1.0 1.5 1.2 4.1 165 chr2R 2508311 intron MFS17 - chr2R 2508394 intron MFS17 - chr2R 2508476 intron MFS17 - chr2R_9_2505001 chr2R_2505001 RAL-239 282 chr2R 3291680 3291957 chr2R 3914848 3915126 5 623167 8.5 11.0 9.8 0.5 623446 chr2R 3291680 intergenic not near genes chr2R 3603403 intergenic not near genes chr2R 3915126 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-239 283 chr2R 3293742 3293762 chr2R 3293820 3293833 6 76 0.5 1.5 1.0 3.0 91 chr2R 3293742 intergenic not near genes chr2R 3293788 intergenic not near genes chr2R 3293833 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-239 284 chr2R 3818932 3818951 chr2R 3819048 3819056 10 115 11.0 3.5 7.2 1.2 124 chr2R 3818932 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819056 intergenic not near genes chr2R_10_3815001 chr2R_3815001 RAL-239 285 chr2R 4312956 4312976 chr2R 4313034 4313060 9 83 2.5 1.5 2.0 3.0 104 chr2R 4312956 intergenic not near genes chr2R 4313008 intergenic not near genes chr2R 4313060 intergenic not near genes chr2R_9_4310001 chr2R_4310001 RAL-239 286 chr2R 4603344 4603360 chr2R 4603425 4603443 9 82 7.0 5.0 6.0 1.3 99 chr2R 4603344 intron p120ctn + chr2R 4603394 intron p120ctn + chr2R 4603443 intron p120ctn + chr2R_9_4600001 chr2R_4600001 RAL-239 287 chr2R 4603361 4603374 chr2R 4603424 4603451 9 74 2.0 5.0 3.5 2.0 90 chr2R 4603361 intron p120ctn + chr2R 4603406 intron p120ctn + chr2R 4603451 intron p120ctn + chr2R_9_4600001 chr2R_4600001 RAL-239 288 chr2R 4622964 4622984 chr2R 4624123 4624143 1360 6 1158 2.0 4.5 3.2 1.4 1179 chr2R 4622964 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624143 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-239 289 chr2R 4624649 4624674 chr2R 4626554 4626578 Bica 5 1904 2.5 3.0 2.8 1.3 1929 chr2R 4624649 intergenic not near genes chr2R 4625614 intergenic not near genes chr2R 4626578 intergenic not near genes chr2R_5_4625001 chr2R_4625001 RAL-239 290 chr2R 4783425 4783431 chr2R 4783503 4783507 6 77 9.5 4.5 7.0 0.8 82 chr2R 4783425 intergenic not near genes chr2R 4783466 intergenic not near genes chr2R 4783507 intergenic not near genes chr2R_6_4780001 chr2R_4780001 RAL-239 291 chr2R 4783432 4783452 chr2R 4783500 4783530 16 77 5.0 4.0 4.5 2.9 98 chr2R 4783432 intergenic not near genes chr2R 4783481 intergenic not near genes chr2R 4783530 intergenic not near genes chr2R_16_4780001 chr2R_4780001 RAL-239 292 chr2R 4838876 4838889 chr2R 4840393 4840412 transib2 4 1522 2.0 3.0 2.5 1.1 1536 chr2R 4838876 intergenic not near genes chr2R 4839644 intergenic not near genes chr2R 4840412 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-239 293 chr2R 5019282 5019312 chr2R 5019368 5019398 7 84 2.5 1.5 2.0 2.3 116 chr2R 5019282 intron Ir41a + chr2R 5019340 intron Ir41a + chr2R 5019398 intron Ir41a + chr2R_7_5015001 chr2R_5015001 RAL-239 294 chr2R 5029033 5029066 chr2R 5029115 5029148 11 81 2.5 2.5 2.5 3.1 115 chr2R 5029033 intergenic not near genes chr2R 5029090 intergenic not near genes chr2R 5029148 intergenic not near genes chr2R_11_5025001 chr2R_5025001 RAL-239 295 chr2R 5075350 5075370 chr2R 5075766 5075786 5 416 0.0 4.0 2.0 1.7 436 chr2R 5075350 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075786 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-239 296 chr2R 5080799 5080816 chr2R 5080890 5080907 5 90 2.0 1.0 1.5 2.0 108 chr2R 5080799 intergenic not near genes chr2R 5080853 intergenic not near genes chr2R 5080907 intergenic not near genes chr2R_5_5080001 chr2R_5080001 RAL-239 297 chr2R 5140020 5140049 chr2R 5140135 5140162 12 117 3.5 3.5 3.5 2.7 142 chr2R 5140020 intergenic not near genes chr2R 5140091 intergenic not near genes chr2R 5140162 intergenic not near genes chr2R_12_5140001 chr2R_5140001 RAL-239 298 chr2R 5192234 5192242 chr2R 5192336 5192341 4 101 2.0 3.0 2.5 1.1 107 chr2R 5192234 intron Nipped-A - chr2R 5192288 intron Nipped-A - chr2R 5192341 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-239 299 chr2R 5396268 5396280 chr2R 5396506 5396518 7 238 10.0 14.5 12.2 0.5 250 chr2R 5396268 intergenic not near genes chr2R 5396393 intergenic not near genes chr2R 5396518 intergenic not near genes chr2R_7_5395001 chr2R_5395001 RAL-239 300 chr2R 5472366 5472394 chr2R 5472460 5472476 8 92 3.0 1.5 2.2 2.5 110 chr2R 5472366 intron CG30440 - chr2R 5472421 intron CG30440 - chr2R 5472476 intron CG30440 - chr2R_8_5470001 chr2R_5470001 RAL-239 301 chr2R 5473370 5473393 chr2R 5473462 5473484 7 91 4.5 2.0 3.2 1.7 114 chr2R 5473370 intron CG30440 - chr2R 5473427 intron CG30440 - chr2R 5473484 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-239 302 chr2R 5581403 5581422 chr2R 5627612 5627631 5 46209 0.0 5.5 2.8 1.3 46228 chr2R 5581403 intergenic not near genes chr2R 5604517 intron Fis1 - chr2R 5627631 intergenic not near genes chr2R_5_5600001 chr2R_5600001 RAL-239 303 chr2R 5859979 5860011 chr2R 5860087 5860123 9 110 3.0 3.5 3.2 2.1 144 chr2R 5859979 3` UTR dpr12 + chr2R 5860051 3` UTR dpr12 + chr2R 5860123 3` UTR dpr12 + chr2R_9_5860001 chr2R_5860001 RAL-239 304 chr2R 5861293 5861317 chr2R 5861409 5861438 10 116 6.5 3.0 4.8 1.7 145 chr2R 5861293 intergenic dpr12 + chr2R 5861366 intergenic not near genes chr2R 5861438 intergenic not near genes chr2R_10_5860001 chr2R_5860001 RAL-239 305 chr2R 5869283 5869308 chr2R 5874359 5874384 flea 6 5076 1.0 1.5 1.2 2.7 5101 chr2R 5869283 intergenic not near genes chr2R 5871834 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-239 306 chr2R 5876869 5876901 chr2R 5876971 5877003 7 101 2.0 1.5 1.8 2.5 134 chr2R 5876869 intergenic not near genes chr2R 5876936 intergenic not near genes chr2R 5877003 intergenic not near genes chr2R_7_5875001 chr2R_5875001 RAL-239 307 chr2R 6013095 6013122 chr2R 6013397 6013425 10 303 2.0 4.0 3.0 2.5 330 chr2R 6013095 intergenic not near genes chr2R 6013260 intergenic not near genes chr2R 6013425 intergenic Act42A - chr2R_10_6010001 chr2R_6010001 RAL-239 308 chr2R 6037464 6037474 chr2R 6037549 6037558 4 85 1.0 1.5 1.2 1.8 94 chr2R 6037464 intron CG14591 - chr2R 6037511 intron CG14591 - chr2R 6037558 intron CG14591 - chr2R_4_6035001 chr2R_6035001 RAL-239 309 chr2R 6065750 6065782 chr2R 6065860 6065878 12 106 1.5 2.0 1.8 4.3 128 chr2R 6065750 intron CCHa2-R + chr2R 6065814 intron CCHa2-R + chr2R 6065878 exon CCHa2-R + chr2R_12_6065001 chr2R_6065001 RAL-239 310 chr2R 6096715 6096747 chr2R 6101912 6101945 BS 7 5195 2.5 5.5 4.0 1.4 5230 chr2R 6096715 intron EcR - chr2R 6099330 intron EcR - chr2R 6101945 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-239 311 chr2R 6108681 6108709 chr2R 6108786 6108817 9 108 3.0 4.0 3.5 2.0 136 chr2R 6108681 intron EcR - chr2R 6108749 intron EcR - chr2R 6108817 intron EcR - chr2R_9_6105001 chr2R_6105001 RAL-239 312 chr2R 6129326 6129358 chr2R 6129404 6129436 6 78 0.5 1.5 1.0 3.0 110 chr2R 6129326 intron EcR - chr2R 6129381 intron EcR - chr2R 6129436 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-239 313 chr2R 6168193 6168229 chr2R 6168275 6168311 4 82 1.0 1.0 1.0 2.0 118 chr2R 6168193 intron EcR - chr2R 6168252 intron EcR - chr2R 6168311 intron EcR - chr2R_4_6165001 chr2R_6165001 RAL-239 314 chr2R 6518081 6518108 chr2R 6518166 6518193 7 85 0.5 5.5 3.0 1.8 112 chr2R 6518081 intron jing + chr2R 6518137 intron jing + chr2R 6518193 intron jing + chr2R_7_6515001 chr2R_6515001 RAL-239 315 chr2R 6607936 6607957 chr2R 6608038 6608059 5 102 1.5 1.0 1.2 2.3 123 chr2R 6607936 intron jing + chr2R 6607998 intron jing + chr2R 6608059 intron jing + chr2R_5_6605001 chr2R_6605001 RAL-239 316 chr2R 6664180 6664201 chr2R 6665970 6665991 S-element 4 1790 1.5 0.5 1.0 2.0 1811 chr2R 6664180 intron,3` UTR Adf1 +,CR45128 - chr2R 6665086 intron Adf1 + chr2R 6665991 intron Adf1 + chr2R_4_6665001 chr2R_6665001 RAL-239 317 chr2R 7052041 7052055 chr2R 7052120 7052134 6 79 1.5 5.0 3.2 1.4 93 chr2R 7052041 intergenic lbm + chr2R 7052088 intergenic lbm + chr2R 7052134 intergenic lbm + chr2R_6_7050001 chr2R_7050001 RAL-239 318 chr2R 7171269 7171275 chr2R 7171355 7171361 4 86 2.5 2.5 2.5 1.1 92 chr2R 7171269 intron pk + chr2R 7171315 intron pk + chr2R 7171361 intron pk + chr2R_4_7170001 chr2R_7170001 RAL-239 319 chr2R 7235822 7235852 chr2R 7240913 7240944 jockey 8 5090 3.0 2.0 2.5 2.3 5122 chr2R 7235822 intergenic not near genes chr2R 7238383 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-239 320 chr2R 7642861 7642891 chr2R 7642941 7642963 7 79 2.5 2.0 2.2 2.2 102 chr2R 7642861 intron CG43340 + chr2R 7642912 intron CG43340 + chr2R 7642963 intron CG43340 + chr2R_7_7640001 chr2R_7640001 RAL-239 321 chr2R 7692021 7692038 chr2R 7692102 7692119 5 81 1.0 2.0 1.5 2.0 98 chr2R 7692021 intron CG1399 - chr2R 7692070 intron CG1399 - chr2R 7692119 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-239 322 chr2R 7762579 7762613 chr2R 7762804 7762817 13 224 4.5 6.5 5.5 2.0 238 chr2R 7762579 intron,intron CG30497 -,CG45093 - chr2R 7762698 intron,intron CG30497 -,CG45093 - chr2R 7762817 intron,intron CG30497 -,CG45093 - chr2R_13_7760001 chr2R_7760001 RAL-239 323 chr2R 7815683 7815701 chr2R 7822152 7822153 Burdock 4 6465 1.0 2.5 1.8 1.4 6470 chr2R 7815683 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822153 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-239 324 chr2R 7869189 7869214 chr2R 7873975 7874000 Doc 7 4786 3.0 2.0 2.5 2.0 4811 chr2R 7869189 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7874000 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-239 325 chr2R 7885132 7885154 chr2R 7885248 7885270 5 116 2.5 2.0 2.2 1.6 138 chr2R 7885132 intron Dgk - chr2R 7885201 intron Dgk - chr2R 7885270 intron Dgk - chr2R_5_7885001 chr2R_7885001 RAL-239 326 chr2R 7897148 7897154 chr2R 7897236 7897243 4 88 0.0 12.5 6.2 0.6 95 chr2R 7897148 intron CG30377 + chr2R 7897196 intron CG30377 + chr2R 7897243 intron CG30377 + chr2R_4_7895001 chr2R_7895001 RAL-239 327 chr2R 7920836 7920861 chr2R 7922409 7922434 5 1573 14.5 30.0 22.2 0.2 1598 chr2R 7920836 3` UTR,3` UTR Cul1 +,Or43b - chr2R 7921635 intron Or43b - chr2R 7922434 exon Or43b - chr2R_5_7920001 chr2R_7920001 RAL-239 328 chr2R 8015649 8015683 chr2R 8017672 8017705 4 2022 0.0 2.0 1.0 2.0 2056 chr2R 8015649 intergenic mir-4981 + chr2R 8016677 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-239 329 chr2R 8151216 8151220 chr2R 8151314 8151332 4 108 1.5 0.5 1.0 2.0 116 chr2R 8151216 intron,intron Lpin -,kermit - chr2R 8151274 intron,intron Lpin -,kermit - chr2R 8151332 intron,intron Lpin -,kermit - chr2R_4_8150001 chr2R_8150001 RAL-239 330 chr2R 8155595 8155605 chr2R 8155684 8155693 4 88 2.5 6.5 4.5 0.7 98 chr2R 8155595 intron,intron Lpin -,kermit - chr2R 8155644 intron,intron Lpin -,kermit - chr2R 8155693 intron,intron Lpin -,kermit - chr2R_4_8155001 chr2R_8155001 RAL-239 331 chr2R 8203760 8203775 chr2R 8203852 8203867 5 92 1.5 0.0 0.8 2.8 107 chr2R 8203760 intron LRP1 + chr2R 8203814 intron LRP1 + chr2R 8203867 intron LRP1 + chr2R_5_8200001 chr2R_8200001 RAL-239 332 chr2R 8330868 8330891 chr2R 8331348 8331377 roo 7 485 3.5 2.0 2.8 1.8 509 chr2R 8330868 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-239 333 chr2R 8483981 8483989 chr2R 8484042 8484048 4 64 0.5 0.0 0.2 3.3 67 chr2R 8483981 intron mtt - chr2R 8484014 intron mtt - chr2R 8484048 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-239 334 chr2R 8563746 8563775 chr2R 8564884 8564913 12 1135 3.0 4.5 3.8 2.5 1167 chr2R 8563746 intergenic Cyp6a14 - chr2R 8564330 3` UTR Cyp6a14 - chr2R 8564913 exon Cyp6a14 - chr2R_12_8560001 chr2R_8560001 RAL-239 335 chr2R 8566032 8566061 chr2R 8566983 8567007 1360 4 944 3.5 0.0 1.8 1.4 975 chr2R 8566032 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567007 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-239 336 chr2R 8588733 8588758 chr2R 8588977 8588991 6 237 25.0 18.0 21.5 0.3 258 chr2R 8588733 intergenic not near genes chr2R 8588862 intergenic not near genes chr2R 8588991 intergenic not near genes chr2R_6_8585001 chr2R_8585001 RAL-239 337 chr2R 8658250 8658267 chr2R 8658307 8658311 4 56 3.5 3.0 3.2 1.0 61 chr2R 8658250 intron ptc + chr2R 8658280 intron ptc + chr2R 8658311 intron ptc + chr2R_4_8655001 chr2R_8655001 RAL-239 338 chr2R 8722766 8722792 chr2R 8723007 8723019 pogo 5 235 1.5 3.5 2.5 1.4 253 chr2R 8722766 intron CG14767 - chr2R 8722892 intron CG14767 - chr2R 8723019 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-239 339 chr2R 8941567 8941598 chr2R 8941660 8941690 12 92 0.5 6.0 3.2 2.9 123 chr2R 8941567 intergenic CR44273 +,CG13748 + chr2R 8941628 5` UTR CR44273 + chr2R 8941690 5` UTR CR44273 + chr2R_12_8940001 chr2R_8940001 RAL-239 340 chr2R 8966154 8966183 chr2R 8966244 8966273 6 90 0.5 2.0 1.2 2.7 119 chr2R 8966154 intron CG8216 - chr2R 8966214 intron CG8216 - chr2R 8966273 intron CG8216 - chr2R_6_8965001 chr2R_8965001 RAL-239 341 chr2R 9065914 9065941 chr2R 9065996 9066023 6 80 2.5 1.0 1.8 2.1 109 chr2R 9065914 intron ana + chr2R 9065968 intron ana + chr2R 9066023 intron ana + chr2R_6_9065001 chr2R_9065001 RAL-239 342 chr2R 9212699 9212727 chr2R 9213184 9213209 roo 8 485 3.5 6.0 4.8 1.4 510 chr2R 9212699 intergenic CR45309 + chr2R 9212954 intergenic CR45309 + chr2R 9213209 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-239 343 chr2R 9227874 9227890 chr2R 9227961 9227977 5 87 2.5 0.0 1.2 2.3 103 chr2R 9227874 3` UTR hig - chr2R 9227926 3` UTR hig - chr2R 9227977 3` UTR hig - chr2R_5_9225001 chr2R_9225001 RAL-239 344 chr2R 9248020 9248029 chr2R 9248083 9248090 5 73 0.0 4.0 2.0 1.7 70 chr2R 9248020 intergenic not near genes chr2R 9248055 intergenic not near genes chr2R 9248090 intergenic not near genes chr2R_5_9245001 chr2R_9245001 RAL-239 345 chr2R 9328603 9328626 chr2R 9328751 9328772 4 148 0.5 1.5 1.0 2.0 169 chr2R 9328603 intron,intron CG13739 -,CG13954 - chr2R 9328688 intron,intron CG13739 -,CG13954 - chr2R 9328772 intron,intron CG13739 -,CG13954 - chr2R_4_9325001 chr2R_9325001 RAL-239 346 chr2R 9368129 9368153 chr2R 9368204 9368228 8 72 3.5 0.0 1.8 2.9 99 chr2R 9368129 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368228 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-239 347 chr2R 9510667 9510690 chr2R 9510783 9510806 5 116 2.0 1.0 1.5 2.0 139 chr2R 9510667 intron brp + chr2R 9510736 intron brp + chr2R 9510806 intron brp + chr2R_5_9510001 chr2R_9510001 RAL-239 348 chr2R 9561827 9561835 chr2R 9561915 9561923 4 88 0.5 0.0 0.2 3.3 96 chr2R 9561827 3` UTR,intron CR45281 -,CG1809 + chr2R 9561875 3` UTR,intron CR45281 -,CG1809 + chr2R 9561923 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-239 349 chr2R 9726610 9726635 chr2R 9734161 9734186 17.6 5 7551 1.5 0.5 1.0 2.5 7576 chr2R 9726610 intron sqa - chr2R 9730398 intron sqa - chr2R 9734186 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-239 350 chr2R 9928420 9928426 chr2R 9928544 9928551 4 124 4.0 0.5 2.2 1.2 131 chr2R 9928420 intron Mef2 - chr2R 9928486 intron Mef2 - chr2R 9928551 intron Mef2 - chr2R_4_9925001 chr2R_9925001 RAL-239 351 chr2R 9945445 9945468 chr2R 9945639 9945664 BS 5 195 3.0 0.5 1.8 1.8 219 chr2R 9945445 intron Mef2 - chr2R 9945554 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-239 352 chr2R 9948382 9948409 chr2R 9948458 9948485 5 71 4.0 3.0 3.5 1.1 103 chr2R 9948382 intron Mef2 - chr2R 9948434 intron Mef2 - chr2R 9948485 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-239 353 chr2R 10005878 10005880 chr2R 10007012 10007045 1360 4 1155 3.5 10.0 6.8 0.5 1167 chr2R 10005878 intron Pka-R2 - chr2R 10006462 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-239 354 chr2R 10132210 10132219 chr2R 10132289 10132299 4 80 1.0 5.5 3.2 1.0 89 chr2R 10132210 intron gem + chr2R 10132254 intron gem + chr2R 10132299 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-239 355 chr2R 10266512 10266529 chr2R 10266593 10266601 4 81 1.0 1.5 1.2 1.8 89 chr2R 10266512 intron CG12910 + chr2R 10266556 intron CG12910 + chr2R 10266601 intron CG12910 + chr2R_4_10265001 chr2R_10265001 RAL-239 356 chr2R 10313328 10313349 chr2R 10313416 10313436 5 88 0.5 3.5 2.0 1.7 108 chr2R 10313328 intergenic not near genes chr2R 10313382 intergenic not near genes chr2R 10313436 intergenic Ndg + chr2R_5_10310001 chr2R_10310001 RAL-239 357 chr2R 10429020 10429050 chr2R 10429096 10429126 7 72 0.5 3.0 1.8 2.5 106 chr2R 10429020 intergenic not near genes chr2R 10429073 intergenic not near genes chr2R 10429126 intergenic not near genes chr2R_7_10425001 chr2R_10425001 RAL-239 358 chr2R 10454096 10454128 chr2R 10454173 10454205 5 77 4.0 4.0 4.0 1.0 109 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-239 359 chr2R 10469025 10469055 chr2R 10469149 10469181 9 126 2.5 1.0 1.8 3.2 156 chr2R 10469025 intron CG11777 + chr2R 10469103 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_9_10465001 chr2R_10465001 RAL-239 360 chr2R 10574630 10574648 chr2R 10574712 10574730 4 82 3.0 0.0 1.5 1.6 100 chr2R 10574630 intron psq + chr2R 10574680 intron psq + chr2R 10574730 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-239 361 chr2R 10758794 10758823 chr2R 10758893 10758921 5 99 2.0 2.0 2.0 1.7 127 chr2R 10758794 intron CG33144 - chr2R 10758858 intron CG33144 - chr2R 10758921 intron CG33144 - chr2R_5_10755001 chr2R_10755001 RAL-239 362 chr2R 10761557 10761589 chr2R 10761711 10761743 6 154 0.5 2.0 1.2 2.7 186 chr2R 10761557 intron,5` UTR CG33144 -,CR43605 + chr2R 10761650 intron,5` UTR CG33144 -,CR43605 + chr2R 10761743 intron CG33144 - chr2R_6_10760001 chr2R_10760001 RAL-239 363 chr2R 10827340 10827360 chr2R 10827423 10827448 6 87 1.5 3.5 2.5 1.7 108 chr2R 10827340 exon CG12325 + chr2R 10827394 3` UTR CG12325 + chr2R 10827448 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_6_10825001 chr2R_10825001 RAL-239 364 chr2R 10948036 10948062 chr2R 10955581 10955613 17.6 10 7549 2.0 4.0 3.0 2.5 7577 chr2R 10948036 intergenic not near genes chr2R 10951824 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-239 365 chr2R 10985095 10985118 chr2R 10985179 10985202 6 84 1.5 0.0 0.8 3.3 107 chr2R 10985095 intron luna - chr2R 10985148 intron luna - chr2R 10985202 intron luna - chr2R_6_10985001 chr2R_10985001 RAL-239 366 chr2R 11009812 11009843 chr2R 11018986 11019016 roo 5 9172 2.0 1.5 1.8 1.8 9204 chr2R 11009812 intron luna - chr2R 11014414 intron luna - chr2R 11019016 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-239 367 chr2R 11297623 11297647 chr2R 11301944 11301968 flea 4 4320 3.5 2.5 3.0 1.0 4345 chr2R 11297623 intergenic CG42336 - chr2R 11299796 intergenic not near genes chr2R 11301968 5` UTR CG7741 + chr2R_4_11295001 chr2R_11295001 RAL-239 368 chr2R 11415535 11415551 chr2R 11418676 11418699 opus 4 3144 1.5 7.5 4.5 0.7 3164 chr2R 11415535 intron Drip - chr2R 11417117 intron Drip - chr2R 11418699 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-239 369 chr2R 11472647 11472676 chr2R 11473844 11473861 pogo 7 1195 4.0 1.5 2.8 1.8 1214 chr2R 11472647 intergenic not near genes chr2R 11473254 intergenic not near genes chr2R 11473861 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-239 370 chr2R 11638687 11638717 chr2R 11638936 11638966 4 249 1.5 0.5 1.0 2.0 279 chr2R 11638687 intron CG9005 - chr2R 11638826 intron CG9005 - chr2R 11638966 intron CG9005 - chr2R_4_11635001 chr2R_11635001 RAL-239 371 chr2R 11677871 11677897 chr2R 11677949 11677975 4 78 1.0 1.0 1.0 2.0 104 chr2R 11677871 intron,exon Roc2 -,Tret1-2 + chr2R 11677923 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-239 372 chr2R 11797868 11797888 chr2R 11797991 11798011 5 123 2.5 4.5 3.5 1.1 143 chr2R 11797868 intron ths + chr2R 11797940 intron ths + chr2R 11798011 intron ths + chr2R_5_11795001 chr2R_11795001 RAL-239 373 chr2R 12120419 12120436 chr2R 12120487 12120517 6 78 2.0 4.0 3.0 1.5 98 chr2R 12120419 intergenic not near genes chr2R 12120468 intergenic not near genes chr2R 12120517 intergenic not near genes chr2R_6_12120001 chr2R_12120001 RAL-239 374 chr2R 12124831 12124856 chr2R 12124915 12124940 7 84 2.5 0.5 1.5 2.8 109 chr2R 12124831 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124940 intergenic not near genes chr2R_7_12120001 chr2R_12120001 RAL-239 375 chr2R 12187471 12187508 chr2R 12190087 12190124 44 2618 127.5 76.5 102.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_44_12185001 chr2R_12185001 RAL-239 376 chr2R 12284304 12284328 chr2R 12284387 12284412 4 83 0.0 0.5 0.2 3.3 108 chr2R 12284304 intron CG42700 + chr2R 12284358 intron CG42700 + chr2R 12284412 intron CG42700 + chr2R_4_12280001 chr2R_12280001 RAL-239 377 chr2R 12363379 12363413 chr2R 12363811 12363845 9 431 0.0 3.0 1.5 3.6 466 chr2R 12363379 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363845 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-239 378 chr2R 12417463 12417477 chr2R 12417542 12417552 7 76 6.0 7.0 6.5 0.9 89 chr2R 12417463 exon CG13157 + chr2R 12417508 exon CG13157 + chr2R 12417552 exon CG13157 + chr2R_7_12415001 chr2R_12415001 RAL-239 379 chr2R 12481155 12481167 chr2R 12482939 12482970 roo 5 1788 6.5 2.0 4.2 1.0 1815 chr2R 12481155 exon Dh44-R2 + chr2R 12482062 intron Dh44-R2 + chr2R 12482970 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-239 380 chr2R 12492098 12492120 chr2R 12492184 12492210 8 88 4.0 0.0 2.0 2.7 112 chr2R 12492098 intron fdl - chr2R 12492154 intron fdl - chr2R 12492210 intron fdl - chr2R_8_12490001 chr2R_12490001 RAL-239 381 chr2R 12501698 12501719 chr2R 12503856 12503878 Rt1c 4 2159 2.5 4.5 3.5 0.9 2180 chr2R 12501698 intron fdl - chr2R 12502788 intron fdl - chr2R 12503878 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-239 382 chr2R 12501722 12501727 chr2R 12503848 12503889 Rt1c 4 2152 2.5 1.0 1.8 1.4 2167 chr2R 12501722 intron fdl - chr2R 12502806 intron fdl - chr2R 12503889 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-239 383 chr2R 12504146 12504180 chr2R 12504222 12504255 9 75 3.5 4.0 3.8 1.9 109 chr2R 12504146 intron fdl - chr2R 12504200 intron fdl - chr2R 12504255 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-239 384 chr2R 12775794 12775825 chr2R 12779143 12779175 8 3348 22.0 8.5 15.2 0.5 3381 chr2R 12775794 intergenic not near genes chr2R 12777484 5` UTR CR45266 + chr2R 12779175 intergenic CR45266 + chr2R_8_12775001 chr2R_12775001 RAL-239 385 chr2R 12775214 12775243 chr2R 12779877 12779907 5 4664 13.0 20.5 16.8 0.3 4693 chr2R 12775214 intergenic not near genes chr2R 12777560 5` UTR CR45266 + chr2R 12779907 intergenic not near genes chr2R_5_12775001 chr2R_12775001 RAL-239 386 chr2R 12789293 12789323 chr2R 12797656 12797672 roo 7 8358 1.0 2.0 1.5 2.8 8379 chr2R 12789293 intron,3` UTR sca +,CR45137 - chr2R 12793482 intron,intron sca +,CR45137 - chr2R 12797672 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-239 387 chr2R 12808318 12808342 chr2R 12808413 12808432 9 93 1.0 2.5 1.8 3.2 114 chr2R 12808318 intergenic not near genes chr2R 12808375 intergenic not near genes chr2R 12808432 intergenic not near genes chr2R_9_12805001 chr2R_12805001 RAL-239 388 chr2R 12819446 12819472 chr2R 12824519 12824545 jockey 4 5073 1.5 3.0 2.2 1.2 5099 chr2R 12819446 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824545 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-239 389 chr2R 12855604 12855627 chr2R 12855683 12855706 6 77 1.5 2.0 1.8 2.1 102 chr2R 12855604 intron CG17574 - chr2R 12855655 intron CG17574 - chr2R 12855706 intron CG17574 - chr2R_6_12855001 chr2R_12855001 RAL-239 390 chr2R 12879232 12879266 chr2R 12879311 12879341 7 78 3.0 1.5 2.2 2.2 109 chr2R 12879232 intron,intron Aats-asp +,Nmda1 - chr2R 12879286 intron,intron Aats-asp +,Nmda1 - chr2R 12879341 intron,intron Aats-asp +,Nmda1 - chr2R_7_12875001 chr2R_12875001 RAL-239 391 chr2R 12897408 12897438 chr2R 12897513 12897543 5 105 1.0 2.5 1.8 1.8 135 chr2R 12897408 intron vg + chr2R 12897476 intron vg + chr2R 12897543 intron vg + chr2R_5_12895001 chr2R_12895001 RAL-239 392 chr2R 13089751 13089784 chr2R 13089860 13089894 7 105 2.0 3.0 2.5 2.0 143 chr2R 13089751 intergenic not near genes chr2R 13089822 intergenic not near genes chr2R 13089894 intergenic not near genes chr2R_7_13085001 chr2R_13085001 RAL-239 393 chr2R 13136838 13136860 chr2R 13141636 13141645 Doc 7 4796 4.0 7.5 5.8 1.0 4807 chr2R 13136838 exon Cap-G + chr2R 13139242 intron Cap-G + chr2R 13141645 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-239 394 chr2R 13249574 13249598 chr2R 13249663 13249686 5 89 0.5 0.0 0.2 4.2 112 chr2R 13249574 intron CG4712 - chr2R 13249630 intron CG4712 - chr2R 13249686 intron CG4712 - chr2R_5_13245001 chr2R_13245001 RAL-239 395 chr2R 13554768 13554774 chr2R 13554853 13554855 4 84 0.0 2.0 1.0 2.0 87 chr2R 13554768 intron Roe1 + chr2R 13554812 intron Roe1 + chr2R 13554855 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-239 396 chr2R 13566259 13566290 chr2R 13566339 13566368 6 79 2.5 1.0 1.8 2.1 109 chr2R 13566259 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566368 intergenic not near genes chr2R_6_13565001 chr2R_13565001 RAL-239 397 chr2R 13580505 13580529 chr2R 13580855 13580879 jockey 6 350 2.5 1.5 2.0 2.0 374 chr2R 13580505 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-239 398 chr2R 13648718 13648750 chr2R 13649149 13649170 10 427 2.0 2.5 2.2 3.1 452 chr2R 13648718 intron fas + chr2R 13648944 intron fas + chr2R 13649170 intron fas + chr2R_10_13645001 chr2R_13645001 RAL-239 399 chr2R 13768986 13769009 chr2R 13769082 13769108 10 98 3.5 3.5 3.5 2.2 122 chr2R 13768986 intergenic not near genes chr2R 13769047 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_10_13765001 chr2R_13765001 RAL-239 400 chr2R 13793152 13793160 chr2R 13793224 13793236 4 75 4.5 0.0 2.2 1.2 84 chr2R 13793152 intergenic not near genes chr2R 13793194 intergenic not near genes chr2R 13793236 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-239 401 chr2R 14142335 14142460 chr2R 14142423 14142548 5 88 0.5 0.5 0.5 3.3 213 chr2R 14142335 intergenic not near genes chr2R 14142442 intergenic not near genes chr2R 14142548 intergenic not near genes chr2R_5_14140001 chr2R_14140001 RAL-239 402 chr2R 14294829 14294855 chr2R 14294909 14294935 5 80 4.5 4.5 4.5 0.9 106 chr2R 14294829 intron Ih + chr2R 14294882 intron Ih + chr2R 14294935 intron Ih + chr2R_5_14290001 chr2R_14290001 RAL-239 403 chr2R 14394227 14394239 chr2R 14399016 14399028 Doc 4 4788 2.5 0.0 1.2 1.8 4801 chr2R 14394227 intergenic not near genes chr2R 14396628 intergenic not near genes chr2R 14399028 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-239 404 chr2R 14449850 14449880 chr2R 14449932 14449938 7 78 4.5 6.0 5.2 1.1 88 chr2R 14449850 intron Oaz + chr2R 14449894 intron Oaz + chr2R 14449938 intron Oaz + chr2R_7_14445001 chr2R_14445001 RAL-239 405 chr2R 14467305 14467327 chr2R 14476444 14476479 roo 10 9149 1.0 6.5 3.8 2.1 9174 chr2R 14467305 intergenic not near genes chr2R 14471892 intergenic not near genes chr2R 14476479 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-239 406 chr2R 14565559 14565591 chr2R 14565636 14565668 8 77 2.0 0.5 1.2 3.6 109 chr2R 14565559 intron ttv + chr2R 14565614 intron ttv + chr2R 14565668 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-239 407 chr2R 14642051 14642085 chr2R 14642139 14642173 5 88 1.0 0.0 0.5 3.3 122 chr2R 14642051 intergenic not near genes chr2R 14642112 intergenic not near genes chr2R 14642173 intergenic not near genes chr2R_5_14640001 chr2R_14640001 RAL-239 408 chr2R 14653911 14653919 chr2R 14654005 14654019 5 97 3.5 1.0 2.2 1.6 108 chr2R 14653911 intergenic not near genes chr2R 14653965 intergenic not near genes chr2R 14654019 intergenic not near genes chr2R_5_14650001 chr2R_14650001 RAL-239 409 chr2R 14729968 14729988 chr2R 14730052 14730072 5 84 1.0 0.5 0.8 2.8 104 chr2R 14729968 intergenic not near genes chr2R 14730020 intergenic not near genes chr2R 14730072 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-239 410 chr2R 14778988 14779014 chr2R 14779122 14779148 11 134 1.5 1.0 1.2 5.0 160 chr2R 14778988 intron kn - chr2R 14779068 intron kn - chr2R 14779148 intron kn - chr2R_11_14775001 chr2R_14775001 RAL-239 411 chr2R 14817677 14817713 chr2R 14817763 14817798 8 83 2.0 0.0 1.0 4.0 121 chr2R 14817677 intergenic CG10202 - chr2R 14817738 intergenic CG10202 - chr2R 14817798 intergenic CG10202 - chr2R_8_14815001 chr2R_14815001 RAL-239 412 chr2R 14911703 14911728 chr2R 14911826 14911851 7 123 1.0 1.5 1.2 3.2 148 chr2R 14911703 intron CG10249 - chr2R 14911777 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_7_14910001 chr2R_14910001 RAL-239 413 chr2R 14922146 14922170 chr2R 14922222 14922238 7 75 2.0 1.5 1.8 2.5 92 chr2R 14922146 intron CG10249 - chr2R 14922192 intron CG10249 - chr2R 14922238 intron CG10249 - chr2R_7_14920001 chr2R_14920001 RAL-239 414 chr2R 14947371 14947395 chr2R 14947528 14947552 7 157 1.0 3.5 2.2 2.2 181 chr2R 14947371 intron aPKC - chr2R 14947462 intron aPKC - chr2R 14947552 intron aPKC - chr2R_7_14945001 chr2R_14945001 RAL-239 415 chr2R 15084983 15085008 chr2R 15092032 15092056 297 5 7049 1.0 2.0 1.5 2.0 7073 chr2R 15084983 intergenic not near genes chr2R 15088520 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-239 416 chr2R 15119318 15119345 chr2R 15127798 15127826 Tirant 4 8480 4.5 2.5 3.5 0.9 8508 chr2R 15119318 intron chn + chr2R 15123572 intron chn + chr2R 15127826 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-239 417 chr2R 15230168 15230182 chr2R 15230278 15230292 4 110 1.5 1.5 1.5 1.6 124 chr2R 15230168 intron,5` UTR Fs -,CR44370 + chr2R 15230230 intron,5` UTR Fs -,CR44370 + chr2R 15230292 intron,intron Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-239 418 chr2R 15235082 15235093 chr2R 15235210 15235216 6 127 1.0 1.0 1.0 3.0 134 chr2R 15235082 intron Fs - chr2R 15235149 intron Fs - chr2R 15235216 intron Fs - chr2R_6_15235001 chr2R_15235001 RAL-239 419 chr2R 15395862 15395889 chr2R 15395966 15395994 9 104 2.0 6.0 4.0 1.8 132 chr2R 15395862 intergenic not near genes chr2R 15395928 intergenic not near genes chr2R 15395994 intergenic not near genes chr2R_9_15395001 chr2R_15395001 RAL-239 420 chr2R 15537713 15537732 chr2R 15537795 15537814 4 82 0.5 0.0 0.2 3.3 101 chr2R 15537713 3` UTR CG30471 + chr2R 15537764 3` UTR CG30471 + chr2R 15537814 intergenic CG30471 +,CG30467 + chr2R_4_15535001 chr2R_15535001 RAL-239 421 chr2R 15558393 15558427 chr2R 15558492 15558498 10 95 3.5 5.5 4.5 1.8 105 chr2R 15558393 intron CG12963 + chr2R 15558446 intron CG12963 + chr2R 15558498 intron CG12963 + chr2R_10_15555001 chr2R_15555001 RAL-239 422 chr2R 15655982 15656014 chr2R 15656062 15656094 9 79 1.5 3.5 2.5 2.6 112 chr2R 15655982 intron CG42524 + chr2R 15656038 intron CG42524 + chr2R 15656094 intron CG42524 + chr2R_9_15655001 chr2R_15655001 RAL-239 423 chr2R 15740481 15740516 chr2R 15740559 15740592 6 73 2.0 2.0 2.0 2.0 111 chr2R 15740481 intron CG30089 + chr2R 15740536 intron CG30089 + chr2R 15740592 intron CG30089 + chr2R_6_15740001 chr2R_15740001 RAL-239 424 chr2R 15783606 15783636 chr2R 15783740 15783772 5 135 2.5 2.5 2.5 1.4 166 chr2R 15783606 intron Zasp52 - chr2R 15783689 intron Zasp52 - chr2R 15783772 intron Zasp52 - chr2R_5_15780001 chr2R_15780001 RAL-239 425 chr2R 15799236 15799264 chr2R 15799325 15799346 10 88 2.5 0.5 1.5 4.0 110 chr2R 15799236 intron,intron Zasp52 -,tun + chr2R 15799291 intron,intron Zasp52 -,tun + chr2R 15799346 intron,intron Zasp52 -,tun + chr2R_10_15795001 chr2R_15795001 RAL-239 426 chr2R 16054952 16054961 chr2R 16055033 16055044 6 81 8.0 9.5 8.8 0.6 92 chr2R 16054952 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055044 intron CG8405 + chr2R_6_16050001 chr2R_16050001 RAL-239 427 chr2R 16055262 16055286 chr2R 16055344 16055368 5 81 1.5 2.5 2.0 1.7 106 chr2R 16055262 intron CG8405 + chr2R 16055315 intron CG8405 + chr2R 16055368 intron CG8405 + chr2R_5_16055001 chr2R_16055001 RAL-239 428 chr2R 16123319 16123335 chr2R 16123417 16123432 5 96 2.0 5.5 3.8 1.0 113 chr2R 16123319 intergenic CG30095 + chr2R 16123376 intergenic CG30095 + chr2R 16123432 intergenic CG30095 + chr2R_5_16120001 chr2R_16120001 RAL-239 429 chr2R 16442900 16442908 chr2R 16442981 16442989 4 80 1.5 3.0 2.2 1.2 89 chr2R 16442900 intergenic CG4409 + chr2R 16442944 intergenic CG4409 + chr2R 16442989 intergenic CG4409 + chr2R_4_16440001 chr2R_16440001 RAL-239 430 chr2R 16466913 16466928 chr2R 16467260 16467280 5 350 4.5 1.0 2.8 1.3 367 chr2R 16466913 exon CheB53a + chr2R 16467096 exon CheB53a + chr2R 16467280 exon CheB53a + chr2R_5_16465001 chr2R_16465001 RAL-239 431 chr2R 16539639 16539662 chr2R 16544847 16544868 copia 4 5204 1.5 2.0 1.8 1.4 5229 chr2R 16539639 intergenic not near genes chr2R 16542254 intergenic not near genes chr2R 16544868 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-239 432 chr2R 16617067 16617088 chr2R 16617146 16617166 5 79 3.5 1.5 2.5 1.4 99 chr2R 16617067 intron CG5065 + chr2R 16617116 intron CG5065 + chr2R 16617166 intron CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-239 433 chr2R 16689159 16689176 chr2R 16689488 16689495 5 324 1.5 4.5 3.0 1.2 336 chr2R 16689159 intron CG30463 - chr2R 16689327 intron CG30463 - chr2R 16689495 intron CG30463 - chr2R_5_16685001 chr2R_16685001 RAL-239 434 chr2R 16737139 16737165 chr2R 16737238 16737257 12 98 4.5 3.5 4.0 2.4 118 chr2R 16737139 3` UTR CG43104 - chr2R 16737198 3` UTR CG43104 - chr2R 16737257 exon CG43104 - chr2R_12_16735001 chr2R_16735001 RAL-239 435 chr2R 16740891 16740919 chr2R 16740980 16741013 11 88 4.0 5.0 4.5 2.0 122 chr2R 16740891 intergenic not near genes chr2R 16740952 intergenic not near genes chr2R 16741013 intergenic not near genes chr2R_11_16740001 chr2R_16740001 RAL-239 436 chr2R 17147242 17147270 chr2R 17152273 17152298 jockey 7 5030 2.0 4.0 3.0 1.8 5056 chr2R 17147242 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152298 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-239 437 chr2R 17176354 17176388 chr2R 17182544 17182578 diver 5 6190 0.0 2.0 1.0 2.5 6224 chr2R 17176354 intergenic not near genes chr2R 17179466 intergenic not near genes chr2R 17182578 intergenic not near genes chr2R_5_17175001 chr2R_17175001 RAL-239 438 chr2R 17236506 17236531 chr2R 17241710 17241735 copia 6 5204 2.0 2.0 2.0 2.0 5229 chr2R 17236506 intron mbl + chr2R 17239120 intron mbl + chr2R 17241735 intron mbl + chr2R_6_17235001 chr2R_17235001 RAL-239 439 chr2R 17313380 17313410 chr2R 17313493 17313523 12 112 6.5 4.0 5.2 1.9 143 chr2R 17313380 intron mbl + chr2R 17313452 intron mbl + chr2R 17313523 intron mbl + chr2R_12_17310001 chr2R_17310001 RAL-239 440 chr2R 17784025 17784053 chr2R 17784266 17784294 pogo 15 240 5.5 7.0 6.2 2.1 269 chr2R 17784025 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784294 intergenic mir-31a - chr2R_15_17780001 chr2R_17780001 RAL-239 441 chr2R 17997069 17997082 chr2R 17997176 17997190 8 108 18.5 9.5 14.0 0.5 121 chr2R 17997069 intron dpr13 - chr2R 17997130 intron dpr13 - chr2R 17997190 intron dpr13 - chr2R_8_17995001 chr2R_17995001 RAL-239 442 chr2R 18044019 18044051 chr2R 18044371 18044397 7 351 1.5 5.5 3.5 1.6 378 chr2R 18044019 intergenic CG5770 -,CG5773 - chr2R 18044208 3` UTR CG5770 - chr2R 18044397 exon CG5770 - chr2R_7_18040001 chr2R_18040001 RAL-239 443 chr2R 18219633 18219656 chr2R 18219715 18219737 6 82 4.5 3.5 4.0 1.2 104 chr2R 18219633 intergenic not near genes chr2R 18219685 intergenic not near genes chr2R 18219737 intergenic not near genes chr2R_6_18215001 chr2R_18215001 RAL-239 444 chr2R 18308284 18308317 chr2R 18308390 18308423 8 106 2.0 2.0 2.0 2.7 139 chr2R 18308284 intron sbb - chr2R 18308354 intron sbb - chr2R 18308423 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-239 445 chr2R 18323809 18323837 chr2R 18323901 18323930 5 92 0.0 2.0 1.0 2.5 121 chr2R 18323809 intron sbb - chr2R 18323870 intron sbb - chr2R 18323930 intron sbb - chr2R_5_18320001 chr2R_18320001 RAL-239 446 chr2R 18344864 18344891 chr2R 18344940 18344967 7 74 2.0 2.5 2.2 2.2 103 chr2R 18344864 intron sbb - chr2R 18344916 intron sbb - chr2R 18344967 intron sbb - chr2R_7_18340001 chr2R_18340001 RAL-239 447 chr2R 18358395 18358422 chr2R 18372607 18372634 roo 5 14212 2.0 2.0 2.0 1.7 14239 chr2R 18358395 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-239 448 chr2R 18408280 18408315 chr2R 18408401 18408436 12 121 4.5 3.5 4.0 2.4 156 chr2R 18408280 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408436 exon GstE8 + chr2R_12_18405001 chr2R_18405001 RAL-239 449 chr2R 18528196 18528219 chr2R 18528280 18528285 6 78 1.0 1.5 1.2 2.7 89 chr2R 18528196 intron CG10924 + chr2R 18528240 intron CG10924 + chr2R 18528285 intron CG10924 + chr2R_6_18525001 chr2R_18525001 RAL-239 450 chr2R 18575816 18575819 chr2R 18581988 18582003 3S18 5 6182 4.5 2.5 3.5 1.1 6187 chr2R 18575816 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582003 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-239 451 chr2R 18575821 18575831 chr2R 18581985 18582019 3S18 5 6183 3.0 2.0 2.5 1.4 6198 chr2R 18575821 intron GEFmeso - chr2R 18578920 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-239 452 chr2R 18590867 18590898 chr2R 18600019 18600050 roo 7 9152 2.0 2.0 2.0 2.3 9183 chr2R 18590867 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-239 453 chr2R 18666418 18666451 chr2R 18666498 18666531 13 76 2.5 2.0 2.2 4.1 113 chr2R 18666418 intergenic not near genes chr2R 18666474 intergenic not near genes chr2R 18666531 intergenic not near genes chr2R_13_18665001 chr2R_18665001 RAL-239 454 chr2R 18713242 18713267 chr2R 18713319 18713344 8 77 1.5 0.5 1.0 4.0 102 chr2R 18713242 intergenic not near genes chr2R 18713293 intergenic not near genes chr2R 18713344 intergenic not near genes chr2R_8_18710001 chr2R_18710001 RAL-239 455 chr2R 18984475 18984493 chr2R 18984734 18984752 7 259 2.5 1.5 2.0 2.3 277 chr2R 18984475 intergenic not near genes chr2R 18984614 intergenic not near genes chr2R 18984752 intergenic not near genes chr2R_7_18980001 chr2R_18980001 RAL-239 456 chr2R 18992030 18992047 chr2R 18992171 18992188 5 141 2.0 3.0 2.5 1.4 158 chr2R 18992030 intron tn + chr2R 18992109 intron tn + chr2R 18992188 intron tn + chr2R_5_18990001 chr2R_18990001 RAL-239 457 chr2R 19116818 19116846 chr2R 19116914 19116942 6 95 2.0 0.5 1.2 2.7 124 chr2R 19116818 intron 5-HT1A + chr2R 19116880 intron 5-HT1A + chr2R 19116942 intron 5-HT1A + chr2R_6_19115001 chr2R_19115001 RAL-239 458 chr2R 19168738 19168755 chr2R 19168819 19168836 4 81 3.0 2.0 2.5 1.1 98 chr2R 19168738 intron CG10737 + chr2R 19168787 intron CG10737 + chr2R 19168836 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-239 459 chr2R 19183350 19183375 chr2R 19183426 19183438 6 73 2.5 2.0 2.2 1.9 88 chr2R 19183350 intron hppy + chr2R 19183394 intron hppy + chr2R 19183438 intron hppy + chr2R_6_19180001 chr2R_19180001 RAL-239 460 chr2R 19300962 19300993 chr2R 19301045 19301077 6 84 3.5 3.0 3.2 1.4 115 chr2R 19300962 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301077 intron Tab2 + chr2R_6_19300001 chr2R_19300001 RAL-239 461 chr2R 19714710 19714732 chr2R 19714786 19714808 9 76 0.0 1.0 0.5 6.0 98 chr2R 19714710 3` UTR CG8517 + chr2R 19714759 3` UTR CG8517 + chr2R 19714808 3` UTR CG8517 + chr2R_9_19710001 chr2R_19710001 RAL-239 462 chr2R 19715836 19715857 chr2R 19723324 19723346 blood 10 7487 2.5 1.5 2.0 3.3 7510 chr2R 19715836 intergenic not near genes chr2R 19719591 intergenic not near genes chr2R 19723346 intergenic not near genes chr2R_10_19715001 chr2R_19715001 RAL-239 463 chr2R 19776593 19776622 chr2R 19779916 19779945 jockey 10 3322 3.0 1.5 2.2 3.1 3352 chr2R 19776593 intergenic not near genes chr2R 19778269 intergenic not near genes chr2R 19779945 intergenic not near genes chr2R_10_19775001 chr2R_19775001 RAL-239 464 chr2R 19807671 19807687 chr2R 19807753 19807769 4 82 4.0 1.0 2.5 1.1 98 chr2R 19807671 intergenic not near genes chr2R 19807720 intergenic not near genes chr2R 19807769 intergenic not near genes chr2R_4_19805001 chr2R_19805001 RAL-239 465 chr2R 19914858 19914866 chr2R 19922270 19922278 mdg1 4 7412 4.0 3.0 3.5 0.9 7420 chr2R 19914858 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922278 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-239 466 chr2R 19957450 19957459 chr2R 19962646 19962661 copia 4 5200 2.5 4.0 3.2 1.0 5211 chr2R 19957450 intergenic CG44623 + chr2R 19960056 intergenic not near genes chr2R 19962661 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-239 467 chr2R 20118874 20118904 chr2R 20118960 20118990 7 85 0.5 2.5 1.5 2.8 116 chr2R 20118874 intergenic not near genes chr2R 20118932 intergenic not near genes chr2R 20118990 intergenic not near genes chr2R_7_20115001 chr2R_20115001 RAL-239 468 chr2R 20739440 20739478 chr2R 20744208 20744245 F-element 4 4768 2.5 3.5 3.0 1.0 4805 chr2R 20739440 intron dpr + chr2R 20741842 intron dpr + chr2R 20744245 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-239 469 chr2R 20759803 20759816 chr2R 20759879 20759892 7 76 0.0 3.0 1.5 2.8 89 chr2R 20759803 intergenic not near genes chr2R 20759848 intergenic not near genes chr2R 20759892 intergenic not near genes chr2R_7_20755001 chr2R_20755001 RAL-239 470 chr2R 20789970 20789979 chr2R 20790109 20790113 4 136 5.5 4.5 5.0 0.7 143 chr2R 20789970 exon CG43667 - chr2R 20790042 exon CG43667 - chr2R 20790113 exon CG43667 - chr2R_4_20790001 chr2R_20790001 RAL-239 471 chr2R 20789986 20790000 chr2R 20790108 20790139 6 134 3.5 4.0 3.8 1.2 153 chr2R 20789986 exon CG43667 - chr2R 20790062 exon CG43667 - chr2R 20790139 exon CG43667 - chr2R_6_20790001 chr2R_20790001 RAL-239 472 chr2R 20812243 20812277 chr2R 20812322 20812343 8 76 3.5 3.0 3.2 1.9 100 chr2R 20812243 intergenic not near genes chr2R 20812293 intergenic not near genes chr2R 20812343 intergenic not near genes chr2R_8_20810001 chr2R_20810001 RAL-239 473 chr2R 20928790 20928801 chr2R 20928855 20928880 4 72 4.0 3.0 3.5 0.9 90 chr2R 20928790 intron Rx + chr2R 20928835 intron Rx + chr2R 20928880 intron Rx + chr2R_4_20925001 chr2R_20925001 RAL-239 474 chr2R 21151130 21151137 chr2R 21153763 21153770 opus 4 2633 0.0 0.5 0.2 3.3 2640 chr2R 21151130 intron CG30389 - chr2R 21152450 intron CG30389 - chr2R 21153770 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-239 475 chr2R 21247710 21247729 chr2R 21247792 21247810 6 82 3.0 2.5 2.8 1.6 100 chr2R 21247710 intron ASPP - chr2R 21247760 intron ASPP - chr2R 21247810 intron ASPP - chr2R_6_21245001 chr2R_21245001 RAL-239 476 chr2R 21251827 21251850 chr2R 21252054 21252077 4 227 2.5 4.0 3.2 1.0 250 chr2R 21251827 intergenic not near genes chr2R 21251952 intergenic not near genes chr2R 21252077 intergenic not near genes chr2R_4_21250001 chr2R_21250001 RAL-239 477 chr2R 21341304 21341315 chr2R 21341400 21341410 6 95 10.5 2.0 6.2 0.8 106 chr2R 21341304 3` UTR dom + chr2R 21341357 3` UTR dom + chr2R 21341410 3` UTR dom + chr2R_6_21340001 chr2R_21340001 RAL-239 478 chr2R 21364170 21364184 chr2R 21364247 21364261 5 77 3.0 0.0 1.5 2.0 91 chr2R 21364170 intron cv-2 - chr2R 21364216 intron cv-2 - chr2R 21364261 intron cv-2 - chr2R_5_21360001 chr2R_21360001 RAL-239 479 chr2R 21421344 21421349 chr2R 21421423 21421428 4 79 5.0 3.5 4.2 0.8 84 chr2R 21421344 intron Sdc - chr2R 21421386 intron Sdc - chr2R 21421428 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-239 480 chr2R 21469965 21469973 chr2R 21470040 21470060 5 85 0.0 2.5 1.2 2.3 95 chr2R 21469965 intron Sdc - chr2R 21470012 intron Sdc - chr2R 21470060 intron Sdc - chr2R_5_21470001 chr2R_21470001 RAL-239 481 chr2R 21597757 21597786 chr2R 21597841 21597860 18 83 5.5 3.0 4.2 3.5 103 chr2R 21597757 intergenic not near genes chr2R 21597808 intergenic not near genes chr2R 21597860 intergenic not near genes chr2R_18_21595001 chr2R_21595001 RAL-239 482 chr2R 21700160 21700184 chr2R 21700246 21700264 9 84 3.0 3.0 3.0 2.2 104 chr2R 21700160 intron HmgZ - chr2R 21700212 intron HmgZ - chr2R 21700264 intron HmgZ - chr2R_9_21700001 chr2R_21700001 RAL-239 483 chr2R 21738278 21738307 chr2R 21747438 21747465 roo 6 9157 2.5 1.0 1.8 2.1 9187 chr2R 21738278 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747465 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-239 484 chr2R 21749323 21749352 chr2R 21749416 21749445 5 92 0.5 1.0 0.8 2.8 122 chr2R 21749323 intergenic not near genes chr2R 21749384 intergenic not near genes chr2R 21749445 intergenic not near genes chr2R_5_21745001 chr2R_21745001 RAL-239 485 chr2R 21753088 21753108 chr2R 21753570 21753589 roo 5 483 4.5 1.5 3.0 1.2 501 chr2R 21753088 intergenic not near genes chr2R 21753338 intergenic not near genes chr2R 21753589 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-239 486 chr2R 21809527 21809554 chr2R 21817764 21817794 roo 9 8240 4.0 3.0 3.5 2.0 8267 chr2R 21809527 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817794 intergenic not near genes chr2R_9_21810001 chr2R_21810001 RAL-239 487 chr2R 21841487 21841509 chr2R 21841572 21841593 4 84 1.0 2.0 1.5 1.6 106 chr2R 21841487 intergenic not near genes chr2R 21841540 intergenic not near genes chr2R 21841593 intergenic not near genes chr2R_4_21840001 chr2R_21840001 RAL-239 488 chr2R 21857346 21857369 chr2R 21857437 21857459 6 90 1.5 2.0 1.8 2.1 113 chr2R 21857346 intergenic not near genes chr2R 21857402 intergenic not near genes chr2R 21857459 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-239 489 chr2R 21919875 21919898 chr2R 21919961 21919986 4 87 2.5 1.5 2.0 1.3 111 chr2R 21919875 intron Fili + chr2R 21919930 intron Fili + chr2R 21919986 intron Fili + chr2R_4_21915001 chr2R_21915001 RAL-239 490 chr2R 22003091 22003122 chr2R 22003177 22003208 7 84 4.5 2.0 3.2 1.7 117 chr2R 22003091 intron CG34370 - chr2R 22003150 intron CG34370 - chr2R 22003208 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-239 491 chr2R 22014208 22014225 chr2R 22014273 22014301 9 75 7.0 2.0 4.5 1.6 93 chr2R 22014208 intron CG34370 - chr2R 22014254 intron CG34370 - chr2R 22014301 intron CG34370 - chr2R_9_22010001 chr2R_22010001 RAL-239 492 chr2R 22040160 22040184 chr2R 22040240 22040242 5 74 2.0 4.0 3.0 1.2 82 chr2R 22040160 intergenic not near genes chr2R 22040201 intergenic not near genes chr2R 22040242 intergenic not near genes chr2R_5_22040001 chr2R_22040001 RAL-239 493 chr2R 22063694 22063714 chr2R 22063850 22063870 7 155 4.5 1.0 2.8 1.8 176 chr2R 22063694 intron Snp + chr2R 22063782 intron Snp + chr2R 22063870 intron Snp + chr2R_7_22060001 chr2R_22060001 RAL-239 494 chr2R 22072700 22072716 chr2R 22072767 22072800 5 79 0.0 5.0 2.5 1.4 100 chr2R 22072700 intron CG11474 - chr2R 22072750 intron CG11474 - chr2R 22072800 exon CG11474 - chr2R_5_22070001 chr2R_22070001 RAL-239 495 chr2R 22280112 22280132 chr2R 22280198 22280218 4 86 2.0 2.5 2.2 1.2 106 chr2R 22280112 intron dve + chr2R 22280165 intron dve + chr2R 22280218 intron dve + chr2R_4_22280001 chr2R_22280001 RAL-239 496 chr2R 22349692 22349719 chr2R 22351476 22351503 jockey 10 1782 7.0 4.5 5.8 1.5 1811 chr2R 22349692 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_10_22350001 chr2R_22350001 RAL-239 497 chr2R 22360382 22360410 chr2R 22360815 22360821 jockey 7 428 4.0 2.5 3.2 1.7 439 chr2R 22360382 intron Liprin-gamma - chr2R 22360602 intron Liprin-gamma - chr2R 22360821 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-239 498 chr2R 22363688 22363716 chr2R 22363764 22363791 5 76 2.5 1.0 1.8 1.8 103 chr2R 22363688 intron Liprin-gamma - chr2R 22363740 intron Liprin-gamma - chr2R 22363791 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-239 499 chr2R 22679758 22679785 chr2R 22679826 22679845 15 70 4.0 3.5 3.8 3.1 87 chr2R 22679758 intergenic not near genes chr2R 22679802 intergenic not near genes chr2R 22679845 intergenic not near genes chr2R_15_22675001 chr2R_22675001 RAL-239 500 chr2R 22756555 22756583 chr2R 22756632 22756660 8 77 3.0 4.5 3.8 1.7 105 chr2R 22756555 intron,intron CG42260 -,CR30267 + chr2R 22756608 intron,intron CG42260 -,CR30267 + chr2R 22756660 intron,intron CG42260 -,CR30267 + chr2R_8_22755001 chr2R_22755001 RAL-239 501 chr2R 22794814 22794824 chr2R 22794889 22794907 6 81 2.5 4.0 3.2 1.4 93 chr2R 22794814 intron CG42260 - chr2R 22794860 intron CG42260 - chr2R 22794907 intron CG42260 - chr2R_6_22790001 chr2R_22790001 RAL-239 502 chr2R 22823166 22823193 chr2R 22823277 22823304 12 110 8.5 4.5 6.5 1.6 138 chr2R 22823166 exon CG42284 + chr2R 22823235 intron CG42284 + chr2R 22823304 intron CG42284 + chr2R_12_22820001 chr2R_22820001 RAL-239 503 chr2R 23052649 23052689 chr2R 23052725 23052765 7 76 2.5 1.5 2.0 2.3 116 chr2R 23052649 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-239 504 chr2R 23053995 23054030 chr2R 23054073 23054108 10 76 2.5 3.5 3.0 2.5 113 chr2R 23053995 intergenic not near genes chr2R 23054052 intergenic not near genes chr2R 23054108 intergenic not near genes chr2R_10_23050001 chr2R_23050001 RAL-239 505 chr2R 23146174 23146209 chr2R 23146264 23146299 12 90 3.0 2.5 2.8 3.2 125 chr2R 23146174 intergenic not near genes chr2R 23146236 intergenic not near genes chr2R 23146299 intergenic not near genes chr2R_12_23145001 chr2R_23145001 RAL-239 506 chr2R 23175037 23175065 chr2R 23175114 23175142 9 76 3.5 3.0 3.2 2.1 105 chr2R 23175037 intron CG34371 - chr2R 23175090 intron CG34371 - chr2R 23175142 intron CG34371 - chr2R_9_23175001 chr2R_23175001 RAL-239 507 chr2R 23356274 23356310 chr2R 23356363 23356399 14 86 2.0 3.0 2.5 4.0 125 chr2R 23356274 3` UTR Rpi + chr2R 23356336 3` UTR Rpi + chr2R 23356399 3` UTR,3` UTR Rpi +,CG3500 - chr2R_14_23355001 chr2R_23355001 RAL-239 508 chr2R 23394326 23394351 chr2R 23394408 23394433 6 81 3.5 1.0 2.2 1.9 107 chr2R 23394326 intron CG3530 - chr2R 23394380 intron CG3530 - chr2R 23394433 intron CG3530 - chr2R_6_23390001 chr2R_23390001 RAL-239 509 chr2R 23437229 23437235 chr2R 23437306 23437311 4 76 2.0 3.5 2.8 1.1 82 chr2R 23437229 intergenic not near genes chr2R 23437270 intergenic not near genes chr2R 23437311 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-239 510 chr2R 23529590 23529606 chr2R 23537148 23537159 412 6 7568 6.0 3.5 4.8 1.0 7569 chr2R 23529590 intron bw - chr2R 23533374 intron bw - chr2R 23537159 exon bw - chr2R_6_23530001 chr2R_23530001 RAL-239 511 chr2R 23563895 23563920 chr2R 23563975 23564000 4 80 1.5 4.5 3.0 1.0 105 chr2R 23563895 3` UTR Pi3K59F + chr2R 23563948 3` UTR Pi3K59F + chr2R 23564000 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_4_23560001 chr2R_23560001 RAL-239 512 chr2R 23594836 23594864 chr2R 23595053 23595080 11 216 3.0 4.5 3.8 2.3 244 chr2R 23594836 intron apt + chr2R 23594958 intron apt + chr2R 23595080 intron apt + chr2R_11_23590001 chr2R_23590001 RAL-239 513 chr2R 23607036 23607062 chr2R 23607117 23607142 6 81 0.0 2.0 1.0 3.0 106 chr2R 23607036 intron CG17664 - chr2R 23607089 intron CG17664 - chr2R 23607142 intron CG17664 - chr2R_6_23605001 chr2R_23605001 RAL-239 514 chr2R 23686342 23686388 chr2R 23686440 23686473 5 87 0.0 1.5 0.8 2.8 131 chr2R 23686342 intron St3 + chr2R 23686408 intron St3 + chr2R 23686473 intron St3 + chr2R_5_23685001 chr2R_23685001 RAL-239 515 chr2R 23718288 23718317 chr2R 23718433 23718458 4 143 27.5 33.0 30.2 0.1 170 chr2R 23718288 intron Sesn + chr2R 23718373 intron Sesn + chr2R 23718458 intron Sesn + chr2R_4_23715001 chr2R_23715001 RAL-239 516 chr2R 23914318 23914330 chr2R 23921925 23921954 412 7 7618 4.0 5.0 4.5 1.3 7636 chr2R 23914318 exon kcc + chr2R 23918136 intron kcc + chr2R 23921954 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-239 517 chr2R 23926838 23926862 chr2R 23926920 23926944 5 82 1.0 1.5 1.2 2.3 106 chr2R 23926838 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926891 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926944 3` UTR Ca-P60A - chr2R_5_23925001 chr2R_23925001 RAL-239 518 chr2R 24031383 24031403 chr2R 24031467 24031487 10 84 2.0 1.5 1.8 3.6 104 chr2R 24031383 5` UTR CG30172 - chr2R 24031435 intergenic CG30172 -,Chi - chr2R 24031487 intergenic Chi -,CG30172 - chr2R_10_24030001 chr2R_24030001 RAL-239 519 chr2R 24077929 24077955 chr2R 24078005 24078030 5 76 1.0 2.5 1.8 1.8 101 chr2R 24077929 3` UTR Mlp60A + chr2R 24077980 3` UTR Mlp60A + chr2R 24078030 3` UTR Mlp60A + chr2R_5_24075001 chr2R_24075001 RAL-239 520 chr2R 24147067 24147091 chr2R 24154645 24154669 412 12 7577 4.5 4.5 4.5 2.2 7602 chr2R 24147067 intron Dat + chr2R 24150868 intron Dat + chr2R 24154669 intron Dat + chr2R_12_24150001 chr2R_24150001 RAL-239 521 chr2R 24228398 24228429 chr2R 24228479 24228508 7 71 3.0 1.5 2.2 2.2 110 chr2R 24228398 intron CG30419 - chr2R 24228453 intron CG30419 - chr2R 24228508 intron CG30419 - chr2R_7_24225001 chr2R_24225001 RAL-239 522 chr2R 24278323 24278360 chr2R 24278404 24278438 15 82 1.0 4.5 2.8 3.9 115 chr2R 24278323 intron nvy + chr2R 24278380 intron nvy + chr2R 24278438 intron nvy + chr2R_15_24275001 chr2R_24275001 RAL-239 523 chr2R 24290564 24290588 chr2R 24290647 24290671 4 83 1.0 0.5 0.8 2.2 107 chr2R 24290564 3` UTR nvy + chr2R 24290618 3` UTR nvy + chr2R 24290671 3` UTR nvy + chr2R_4_24290001 chr2R_24290001 RAL-239 524 chr2R 24303897 24303915 chr2R 24303976 24303999 7 79 1.5 0.0 0.8 3.9 102 chr2R 24303897 intergenic not near genes chr2R 24303948 intergenic not near genes chr2R 24303999 intergenic not near genes chr2R_7_24300001 chr2R_24300001 RAL-239 525 chr2R 24647587 24647618 chr2R 24655144 24655175 412 11 7557 2.0 0.5 1.2 5.0 7588 chr2R 24647587 intergenic not near genes chr2R 24651381 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_11_24650001 chr2R_24650001 RAL-239 526 chr2R 24727895 24727918 chr2R 24735394 24735426 mdg1 8 7503 1.5 7.5 4.5 1.5 7531 chr2R 24727895 intron Mid1 - chr2R 24731660 intron Mid1 - chr2R 24735426 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-239 527 chr2R 24763609 24763641 chr2R 24765585 24765615 G2 12 1975 7.0 7.5 7.2 1.5 2006 chr2R 24763609 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765615 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-239 528 chr2R 24859847 24859860 chr2R 24859933 24859933 6 84 3.5 4.0 3.8 1.2 86 chr2R 24859847 5` UTR CR44829 + chr2R 24859890 5` UTR CR44829 + chr2R 24859933 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-239 529 chr2R 25003658 25003689 chr2R 25005081 25005113 7 1423 2.5 0.5 1.5 2.8 1455 chr2R 25003658 intron zip - chr2R 25004386 intron zip - chr2R 25005113 intron zip - chr2R_7_25000001 chr2R_25000001 RAL-239 530 chr2R 25014545 25014568 chr2R 25014619 25014644 5 75 3.5 3.0 3.2 1.2 99 chr2R 25014545 intron uzip + chr2R 25014594 intron uzip + chr2R 25014644 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-239 531 chr2R 25018359 25018373 chr2R 25018448 25018473 5 97 3.5 6.0 4.8 0.9 114 chr2R 25018359 intron uzip + chr2R 25018416 intron uzip + chr2R 25018473 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-239 532 chr2R 25101278 25101309 chr2R 25101380 25101406 9 99 1.5 2.0 1.8 3.2 128 chr2R 25101278 intron lov - chr2R 25101342 intron lov - chr2R 25101406 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-239 533 chr3L 68984 69014 chr3L 69071 69099 5 86 1.5 1.5 1.5 2.0 115 chr3L 68984 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69099 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-239 534 chr3L 88747 88771 chr3L 90667 90691 4 1920 1.5 4.5 3.0 1.0 1944 chr3L 88747 intergenic not near genes chr3L 89719 intergenic not near genes chr3L 90691 intergenic not near genes chr3L_4_85001 chr3L_85001 RAL-239 535 chr3L 110211 110242 chr3L 119378 119409 roo 7 9167 1.0 0.5 0.8 3.9 9198 chr3L 110211 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_7_110001 chr3L_110001 RAL-239 536 chr3L 402687 402713 chr3L 409740 409766 297 12 7052 5.0 5.0 5.0 2.0 7079 chr3L 402687 intergenic not near genes chr3L 406226 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_12_405001 chr3L_405001 RAL-239 537 chr3L 470919 470948 chr3L 471146 471175 8 226 3.0 4.5 3.8 1.7 256 chr3L 470919 intron klar - chr3L 471047 intron klar - chr3L 471175 intron klar - chr3L_8_470001 chr3L_470001 RAL-239 538 chr3L 491638 491666 chr3L 491720 491748 6 82 0.5 1.5 1.0 3.0 110 chr3L 491638 intron klar - chr3L 491693 intron klar - chr3L 491748 intron klar - chr3L_6_490001 chr3L_490001 RAL-239 539 chr3L 563970 564001 chr3L 564149 564180 8 179 4.0 0.5 2.2 2.5 210 chr3L 563970 intron hipk + chr3L 564075 intron hipk + chr3L 564180 intron hipk + chr3L_8_560001 chr3L_560001 RAL-239 540 chr3L 651394 651424 chr3L 651475 651511 8 85 1.0 3.5 2.2 2.5 117 chr3L 651394 intergenic Gale +,CG3402 - chr3L 651452 intergenic CG3402 -,Gale + chr3L 651511 intergenic CG3402 -,Gale + chr3L_8_650001 chr3L_650001 RAL-239 541 chr3L 702490 702503 chr3L 702559 702589 6 81 2.0 1.5 1.8 2.1 99 chr3L 702490 intergenic not near genes chr3L 702540 intergenic not near genes chr3L 702589 intergenic not near genes chr3L_6_700001 chr3L_700001 RAL-239 542 chr3L 858001 858009 chr3L 866480 866489 Tirant 5 8480 7.0 3.5 5.2 0.8 8488 chr3L 858001 intergenic not near genes chr3L 862245 intergenic not near genes chr3L 866489 intergenic CG12502 + chr3L_5_860001 chr3L_860001 RAL-239 543 chr3L 858011 858029 chr3L 866478 866492 Tirant 4 8468 5.0 3.5 4.2 0.8 8481 chr3L 858011 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866492 intergenic CG12502 + chr3L_4_860001 chr3L_860001 RAL-239 544 chr3L 900001 900020 chr3L 900085 900104 4 84 0.0 4.0 2.0 1.3 103 chr3L 900001 intergenic not near genes chr3L 900052 intergenic not near genes chr3L 900104 intergenic not near genes chr3L_4_900001 chr3L_900001 RAL-239 545 chr3L 922171 922184 chr3L 922248 922258 4 76 3.5 2.0 2.8 1.1 87 chr3L 922171 intron Glut1 + chr3L 922214 intron Glut1 + chr3L 922258 intron Glut1 + chr3L_4_920001 chr3L_920001 RAL-239 546 chr3L 933910 933938 chr3L 934013 934041 6 103 1.5 2.5 2.0 2.0 131 chr3L 933910 intron Glut1 + chr3L 933976 intron Glut1 + chr3L 934041 intron Glut1 + chr3L_6_930001 chr3L_930001 RAL-239 547 chr3L 939770 939805 chr3L 940891 940910 jockey 8 1118 1.0 1.5 1.2 3.6 1140 chr3L 939770 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940910 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-239 548 chr3L 1015139 1015167 chr3L 1015227 1015236 8 84 1.0 2.5 1.8 2.9 97 chr3L 1015139 intron trio - chr3L 1015188 intron trio - chr3L 1015236 intron trio - chr3L_8_1015001 chr3L_1015001 RAL-239 549 chr3L 1031217 1031233 chr3L 1031354 1031370 6 136 1.5 2.5 2.0 2.0 153 chr3L 1031217 intron trio - chr3L 1031294 intron trio - chr3L 1031370 intron trio - chr3L_6_1030001 chr3L_1030001 RAL-239 550 chr3L 1040554 1040581 chr3L 1040638 1040665 7 83 1.5 2.0 1.8 2.5 111 chr3L 1040554 intron bab1 - chr3L 1040610 intron bab1 - chr3L 1040665 intron bab1 - chr3L_7_1040001 chr3L_1040001 RAL-239 551 chr3L 1219596 1219624 chr3L 1227329 1227357 412 14 7729 4.0 6.5 5.2 2.3 7761 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_14_1220001 chr3L_1220001 RAL-239 552 chr3L 1310994 1311004 chr3L 1315855 1315864 4 4862 38.5 25.5 32.0 0.1 4870 chr3L 1310994 exon CG2469 + chr3L 1313429 intergenic CG9186 -,CG9153 + chr3L 1315864 exon CG9153 + chr3L_4_1310001 chr3L_1310001 RAL-239 553 chr3L 1358753 1358787 chr3L 1359134 1359168 13 379 4.0 2.0 3.0 3.2 415 chr3L 1358753 intron Ptp61F - chr3L 1358960 intron Ptp61F - chr3L 1359168 intron Ptp61F - chr3L_13_1355001 chr3L_1355001 RAL-239 554 chr3L 1374434 1374448 chr3L 1374509 1374523 4 76 0.5 0.5 0.5 2.7 89 chr3L 1374434 intron,intron Ptp61F -,ru + chr3L 1374478 intron,intron Ptp61F -,ru + chr3L 1374523 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-239 555 chr3L 1406189 1406216 chr3L 1406299 1406325 10 107 6.0 2.0 4.0 2.0 136 chr3L 1406189 intron Ptp61F - chr3L 1406257 intron Ptp61F - chr3L 1406325 intron Ptp61F - chr3L_10_1405001 chr3L_1405001 RAL-239 556 chr3L 1480995 1481012 chr3L 1481075 1481091 7 80 4.5 6.0 5.2 1.1 96 chr3L 1480995 intron stet - chr3L 1481043 intron stet - chr3L 1481091 intron stet - chr3L_7_1480001 chr3L_1480001 RAL-239 557 chr3L 1514785 1514794 chr3L 1514880 1514890 4 96 8.0 4.5 6.2 0.6 105 chr3L 1514785 intron,intron Psa +,cue - chr3L 1514838 intron,intron Psa +,cue - chr3L 1514890 intron,intron Psa +,cue - chr3L_4_1510001 chr3L_1510001 RAL-239 558 chr3L 1578159 1578184 chr3L 1578241 1578269 5 83 5.5 1.0 3.2 1.2 110 chr3L 1578159 intron CG13917 + chr3L 1578214 intron CG13917 + chr3L 1578269 intron CG13917 + chr3L_5_1575001 chr3L_1575001 RAL-239 559 chr3L 1711001 1711028 chr3L 1711225 1711256 9 223 3.0 3.5 3.2 2.1 255 chr3L 1711001 intron CG7991 + chr3L 1711128 intron CG7991 + chr3L 1711256 intron CG7991 + chr3L_9_1710001 chr3L_1710001 RAL-239 560 chr3L 1805697 1805709 chr3L 1805871 1805883 6 174 4.0 0.5 2.2 1.9 186 chr3L 1805697 exon CG42676 + chr3L 1805790 intron CG42676 + chr3L 1805883 intron CG42676 + chr3L_6_1805001 chr3L_1805001 RAL-239 561 chr3L 1905351 1905372 chr3L 1905445 1905466 8 93 0.5 5.0 2.8 2.1 115 chr3L 1905351 intron CG1887 - chr3L 1905408 intron CG1887 - chr3L 1905466 intron CG1887 - chr3L_8_1905001 chr3L_1905001 RAL-239 562 chr3L 1925080 1925111 chr3L 1925167 1925198 5 87 1.5 1.5 1.5 2.0 118 chr3L 1925080 intron Dbx + chr3L 1925139 intron Dbx + chr3L 1925198 intron Dbx + chr3L_5_1925001 chr3L_1925001 RAL-239 563 chr3L 1967526 1967557 chr3L 1967626 1967657 10 99 3.0 2.0 2.5 2.9 131 chr3L 1967526 intron CG1927 - chr3L 1967592 intron CG1927 - chr3L 1967657 intron CG1927 - chr3L_10_1965001 chr3L_1965001 RAL-239 564 chr3L 1988842 1988869 chr3L 1989019 1989048 10 178 3.5 3.0 3.2 2.4 206 chr3L 1988842 intergenic not near genes chr3L 1988945 intergenic not near genes chr3L 1989048 intergenic not near genes chr3L_10_1985001 chr3L_1985001 RAL-239 565 chr3L 1991118 1991147 chr3L 1991196 1991225 13 78 2.0 0.5 1.2 5.9 107 chr3L 1991118 intergenic not near genes chr3L 1991172 intergenic not near genes chr3L 1991225 intergenic not near genes chr3L_13_1990001 chr3L_1990001 RAL-239 566 chr3L 2113670 2113697 chr3L 2113973 2113998 10 302 1.0 4.0 2.5 2.9 328 chr3L 2113670 intron sls - chr3L 2113834 intron sls - chr3L 2113998 intron sls - chr3L_10_2110001 chr3L_2110001 RAL-239 567 chr3L 2139208 2139226 chr3L 2139287 2139307 6 81 2.0 3.0 2.5 1.7 99 chr3L 2139208 intron zormin - chr3L 2139258 intron zormin - chr3L 2139307 intron zormin - chr3L_6_2135001 chr3L_2135001 RAL-239 568 chr3L 2168777 2168801 chr3L 2168868 2168892 5 91 3.0 2.0 2.5 1.4 115 chr3L 2168777 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168892 intron CG15879 - chr3L_5_2165001 chr3L_2165001 RAL-239 569 chr3L 2231883 2231919 chr3L 2235358 2235394 11 3478 37.5 34.0 35.8 0.3 3511 chr3L 2231883 exon Oseg2 + chr3L 2233638 exon Oseg2 + chr3L 2235394 3` UTR CG9018 - chr3L_11_2230001 chr3L_2230001 RAL-239 570 chr3L 2308013 2308029 chr3L 2308119 2308127 4 104 1.0 2.0 1.5 1.6 114 chr3L 2308013 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308127 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-239 571 chr3L 2317574 2317594 chr3L 2319388 2319407 5 1814 0.5 5.5 3.0 1.2 1833 chr3L 2317574 3` UTR CR45427 - chr3L 2318490 intergenic not near genes chr3L 2319407 3` UTR CR45426 - chr3L_5_2315001 chr3L_2315001 RAL-239 572 chr3L 2331583 2331605 chr3L 2331660 2331682 6 76 2.5 2.0 2.2 1.9 99 chr3L 2331583 intron MsR1 + chr3L 2331632 intron MsR1 + chr3L 2331682 intron MsR1 + chr3L_6_2330001 chr3L_2330001 RAL-239 573 chr3L 2348138 2348142 chr3L 2348225 2348229 4 87 1.0 6.0 3.5 0.9 91 chr3L 2348138 intergenic not near genes chr3L 2348184 intergenic not near genes chr3L 2348229 intergenic not near genes chr3L_4_2345001 chr3L_2345001 RAL-239 574 chr3L 2446739 2446772 chr3L 2446839 2446855 6 92 2.0 2.0 2.0 2.0 116 chr3L 2446739 intron CG45186 + chr3L 2446797 intron CG45186 + chr3L 2446855 intron CG45186 + chr3L_6_2445001 chr3L_2445001 RAL-239 575 chr3L 2447507 2447537 chr3L 2456663 2456693 roo 6 9155 1.0 4.0 2.5 1.7 9186 chr3L 2447507 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-239 576 chr3L 2533654 2533671 chr3L 2533732 2533753 4 80 3.0 6.0 4.5 0.7 99 chr3L 2533654 intron Spn - chr3L 2533704 intron Spn - chr3L 2533753 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-239 577 chr3L 2882115 2882143 chr3L 2882191 2882219 7 76 0.5 1.0 0.8 3.9 104 chr3L 2882115 intergenic not near genes chr3L 2882167 intergenic not near genes chr3L 2882219 intergenic not near genes chr3L_7_2880001 chr3L_2880001 RAL-239 578 chr3L 2899574 2899606 chr3L 2899687 2899719 9 113 3.0 3.0 3.0 2.2 145 chr3L 2899574 intron Shab + chr3L 2899646 intron Shab + chr3L 2899719 intron Shab + chr3L_9_2895001 chr3L_2895001 RAL-239 579 chr3L 3007303 3007307 chr3L 3007503 3007507 4 200 3.0 2.0 2.5 1.1 204 chr3L 3007303 intron FMRFaR + chr3L 3007405 intron FMRFaR + chr3L 3007507 intron FMRFaR + chr3L_4_3005001 chr3L_3005001 RAL-239 580 chr3L 3028263 3028290 chr3L 3028347 3028369 5 83 0.5 1.5 1.0 2.5 106 chr3L 3028263 intergenic not near genes chr3L 3028316 intergenic not near genes chr3L 3028369 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-239 581 chr3L 3060083 3060116 chr3L 3060209 3060243 8 127 3.0 4.0 3.5 1.8 160 chr3L 3060083 intron CG32486 - chr3L 3060163 intron CG32486 - chr3L 3060243 intron CG32486 - chr3L_8_3060001 chr3L_3060001 RAL-239 582 chr3L 3102818 3102844 chr3L 3102904 3102922 10 82 3.5 4.5 4.0 2.0 104 chr3L 3102818 intron Cht7 - chr3L 3102870 intron Cht7 - chr3L 3102922 intron Cht7 - chr3L_10_3100001 chr3L_3100001 RAL-239 583 chr3L 3141027 3141049 chr3L 3141116 3141119 5 82 1.0 5.0 3.0 1.2 92 chr3L 3141027 intron CG11537 - chr3L 3141073 intron CG11537 - chr3L 3141119 intron CG11537 - chr3L_5_3140001 chr3L_3140001 RAL-239 584 chr3L 3281437 3281473 chr3L 3281932 3281963 Doc 11 495 2.0 4.0 3.0 2.8 526 chr3L 3281437 intron CG12017 + chr3L 3281700 intron CG12017 + chr3L 3281963 intron CG12017 + chr3L_11_3280001 chr3L_3280001 RAL-239 585 chr3L 3475075 3475106 chr3L 3475519 3475550 jockey 11 444 3.0 3.5 3.2 2.6 475 chr3L 3475075 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-239 586 chr3L 3484380 3484406 chr3L 3484555 3484582 4 176 0.0 1.5 0.8 2.2 202 chr3L 3484380 intron,intron CG42324 +,CG43074 - chr3L 3484481 intron,exon CG42324 +,CG43074 - chr3L 3484582 intron,exon CG42324 +,CG43074 - chr3L_4_3480001 chr3L_3480001 RAL-239 587 chr3L 3574493 3574502 chr3L 3574627 3574636 4 134 4.0 2.5 3.2 1.0 143 chr3L 3574493 intron Eip63E + chr3L 3574564 intron Eip63E + chr3L 3574636 intron Eip63E + chr3L_4_3570001 chr3L_3570001 RAL-239 588 chr3L 3601296 3601332 chr3L 3606607 3606642 copia 7 5311 4.5 2.0 3.2 1.7 5346 chr3L 3601296 intron Eip63E + chr3L 3603969 intron Eip63E + chr3L 3606642 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-239 589 chr3L 3657001 3657030 chr3L 3657079 3657108 8 77 2.0 3.0 2.5 2.3 107 chr3L 3657001 intergenic not near genes chr3L 3657054 intergenic not near genes chr3L 3657108 intergenic not near genes chr3L_8_3655001 chr3L_3655001 RAL-239 590 chr3L 3798057 3798073 chr3L 3798138 3798146 4 79 1.5 1.0 1.2 1.8 89 chr3L 3798057 intron CG32264 - chr3L 3798102 intron CG32264 - chr3L 3798146 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-239 591 chr3L 3969876 3969894 chr3L 3969948 3969975 6 79 1.5 2.5 2.0 2.0 99 chr3L 3969876 intergenic not near genes chr3L 3969926 intergenic not near genes chr3L 3969975 intergenic not near genes chr3L_6_3965001 chr3L_3965001 RAL-239 592 chr3L 4058839 4058871 chr3L 4058919 4058951 6 80 1.0 1.5 1.2 2.7 112 chr3L 4058839 3` UTR CG1136 + chr3L 4058895 3` UTR CG1136 + chr3L 4058951 3` UTR CG1136 + chr3L_6_4055001 chr3L_4055001 RAL-239 593 chr3L 4328740 4328765 chr3L 4336238 4336263 412 4 7498 1.5 1.0 1.2 1.8 7523 chr3L 4328740 intron Cip4 - chr3L 4332502 intron Cip4 - chr3L 4336263 intron Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-239 594 chr3L 4347830 4347849 chr3L 4347916 4347935 4 86 1.0 1.0 1.0 2.0 105 chr3L 4347830 intron Cip4 - chr3L 4347882 intron Cip4 - chr3L 4347935 intron Cip4 - chr3L_4_4345001 chr3L_4345001 RAL-239 595 chr3L 4494626 4494657 chr3L 4494754 4494785 8 126 1.0 0.5 0.8 4.4 159 chr3L 4494626 intron CR44709 - chr3L 4494706 3` UTR CR44709 - chr3L 4494785 3` UTR CR44709 - chr3L_8_4490001 chr3L_4490001 RAL-239 596 chr3L 4519418 4519437 chr3L 4519495 4519514 9 77 3.5 1.0 2.2 2.8 96 chr3L 4519418 intron Tie - chr3L 4519466 intron Tie - chr3L 4519514 intron Tie - chr3L_9_4515001 chr3L_4515001 RAL-239 597 chr3L 4597213 4597247 chr3L 4597295 4597327 8 81 1.0 7.0 4.0 1.6 114 chr3L 4597213 intron Src64B - chr3L 4597270 intron Src64B - chr3L 4597327 intron Src64B - chr3L_8_4595001 chr3L_4595001 RAL-239 598 chr3L 4652584 4652600 chr3L 4652667 4652683 6 83 3.0 3.0 3.0 1.5 99 chr3L 4652584 intron axo - chr3L 4652634 intron axo - chr3L 4652683 intron axo - chr3L_6_4650001 chr3L_4650001 RAL-239 599 chr3L 4657975 4657999 chr3L 4658432 4658447 8 459 2.5 3.5 3.0 2.0 472 chr3L 4657975 intron axo - chr3L 4658211 intron axo - chr3L 4658447 intron axo - chr3L_8_4655001 chr3L_4655001 RAL-239 600 chr3L 4668385 4668408 chr3L 4668533 4668556 7 148 3.0 3.5 3.2 1.7 171 chr3L 4668385 intron axo - chr3L 4668470 intron axo - chr3L 4668556 intron axo - chr3L_7_4665001 chr3L_4665001 RAL-239 601 chr3L 4676723 4676752 chr3L 4677415 4677444 9 692 1.0 2.0 1.5 3.6 721 chr3L 4676723 intron axo - chr3L 4677084 intron axo - chr3L 4677444 intron axo - chr3L_9_4675001 chr3L_4675001 RAL-239 602 chr3L 4703487 4703501 chr3L 4703565 4703579 4 78 0.5 3.5 2.0 1.3 92 chr3L 4703487 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703533 intron,intron RhoGEF64C +,CR43879 + chr3L 4703579 intron,intron RhoGEF64C +,CR43879 + chr3L_4_4700001 chr3L_4700001 RAL-239 603 chr3L 4858303 4858336 chr3L 4858393 4858425 12 86 6.0 4.0 5.0 2.0 122 chr3L 4858303 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_12_4855001 chr3L_4855001 RAL-239 604 chr3L 4901124 4901154 chr3L 4907314 4907344 diver 7 6189 1.0 1.0 1.0 3.5 6220 chr3L 4901124 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_7_4900001 chr3L_4900001 RAL-239 605 chr3L 4908905 4908929 chr3L 4909013 4909037 5 107 1.5 1.0 1.2 2.3 132 chr3L 4908905 intergenic not near genes chr3L 4908971 intergenic not near genes chr3L 4909037 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-239 606 chr3L 4958424 4958446 chr3L 4958503 4958534 5 84 2.5 3.0 2.8 1.3 110 chr3L 4958424 intron Con - chr3L 4958479 intron Con - chr3L 4958534 intron Con - chr3L_5_4955001 chr3L_4955001 RAL-239 607 chr3L 5257632 5257659 chr3L 5257920 5257947 14 287 1.5 2.5 2.0 4.7 315 chr3L 5257632 intron shep - chr3L 5257790 intron shep - chr3L 5257947 intron shep - chr3L_14_5255001 chr3L_5255001 RAL-239 608 chr3L 5403454 5403467 chr3L 5403852 5403864 5 397 2.0 2.5 2.2 1.6 410 chr3L 5403454 intergenic not near genes chr3L 5403659 intergenic not near genes chr3L 5403864 intergenic not near genes chr3L_5_5400001 chr3L_5400001 RAL-239 609 chr3L 5498402 5498430 chr3L 5498479 5498507 5 77 4.5 3.0 3.8 1.0 105 chr3L 5498402 exon blanks - chr3L 5498454 exon blanks - chr3L 5498507 exon blanks - chr3L_5_5495001 chr3L_5495001 RAL-239 610 chr3L 5516413 5516438 chr3L 5516503 5516507 4 86 1.0 2.0 1.5 1.6 94 chr3L 5516413 intron Lkr - chr3L 5516460 intron Lkr - chr3L 5516507 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-239 611 chr3L 5957575 5957601 chr3L 5957652 5957678 7 76 3.0 2.5 2.8 1.8 103 chr3L 5957575 intergenic not near genes chr3L 5957626 intergenic not near genes chr3L 5957678 intergenic not near genes chr3L_7_5955001 chr3L_5955001 RAL-239 612 chr3L 6052656 6052666 chr3L 6052736 6052749 6 83 9.0 10.5 9.8 0.6 93 chr3L 6052656 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-239 613 chr3L 6095894 6095920 chr3L 6096838 6096864 7 944 28.0 13.5 20.8 0.3 970 chr3L 6095894 exon loj + chr3L 6096379 3` UTR loj + chr3L 6096864 intergenic loj + chr3L_7_6095001 chr3L_6095001 RAL-239 614 chr3L 6183552 6183558 chr3L 6187607 6187622 6 4058 15.0 24.0 19.5 0.3 4070 chr3L 6183552 exon D19B - chr3L 6185587 exon CG43293 + chr3L 6187622 exon D19A - chr3L_6_6185001 chr3L_6185001 RAL-239 615 chr3L 6220917 6220932 chr3L 6230068 6230084 roo 5 9150 4.5 2.5 3.5 1.1 9167 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230084 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-239 616 chr3L 6261839 6261845 chr3L 6262101 6262107 4 262 2.5 2.5 2.5 1.1 268 chr3L 6261839 intron ImpL3 - chr3L 6261973 intron ImpL3 - chr3L 6262107 intron ImpL3 - chr3L_4_6260001 chr3L_6260001 RAL-239 617 chr3L 6335011 6335033 chr3L 6335482 6335504 297 5 471 1.0 4.5 2.8 1.3 493 chr3L 6335011 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335504 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-239 618 chr3L 6405661 6405688 chr3L 6432124 6432152 roo 4 26464 1.0 0.5 0.8 2.2 26491 chr3L 6405661 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432152 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-239 619 chr3L 6442152 6442179 chr3L 6442384 6442394 4 219 12.5 14.0 13.2 0.3 242 chr3L 6442152 intron CG42747 + chr3L 6442273 intron CG42747 + chr3L 6442394 intron CG42747 + chr3L_4_6440001 chr3L_6440001 RAL-239 620 chr3L 6657440 6657475 chr3L 6657592 6657624 6 151 5.0 2.5 3.8 1.2 184 chr3L 6657440 intergenic not near genes chr3L 6657532 intergenic not near genes chr3L 6657624 intergenic not near genes chr3L_6_6655001 chr3L_6655001 RAL-239 621 chr3L 6754071 6754101 chr3L 6754159 6754189 7 88 0.5 1.5 1.0 3.5 118 chr3L 6754071 3` UTR CG10103 - chr3L 6754130 3` UTR CG10103 - chr3L 6754189 3` UTR CG10103 - chr3L_7_6750001 chr3L_6750001 RAL-239 622 chr3L 6887516 6887550 chr3L 6895008 6895009 roo 7 7487 1.0 2.5 1.8 2.5 7493 chr3L 6887516 intergenic not near genes chr3L 6891262 intergenic not near genes chr3L 6895009 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-239 623 chr3L 6962218 6962250 chr3L 6962297 6962307 14 76 3.0 3.5 3.2 3.3 89 chr3L 6962218 intron sgl - chr3L 6962262 intron sgl - chr3L 6962307 intron sgl - chr3L_14_6960001 chr3L_6960001 RAL-239 624 chr3L 6968383 6968402 chr3L 6968460 6968479 9 77 4.0 5.0 4.5 1.6 96 chr3L 6968383 exon Mis12 - chr3L 6968431 intron Mis12 - chr3L 6968479 intron Mis12 - chr3L_9_6965001 chr3L_6965001 RAL-239 625 chr3L 7226908 7226930 chr3L 7227185 7227209 6 276 3.5 0.5 2.0 2.0 301 chr3L 7226908 intergenic not near genes chr3L 7227058 intergenic not near genes chr3L 7227209 intergenic not near genes chr3L_6_7225001 chr3L_7225001 RAL-239 626 chr3L 7244941 7244961 chr3L 7245033 7245051 11 89 5.5 4.5 5.0 1.8 110 chr3L 7244941 exon mei-P22 + chr3L 7244996 exon mei-P22 + chr3L 7245051 exon mei-P22 + chr3L_11_7240001 chr3L_7240001 RAL-239 627 chr3L 7277106 7277128 chr3L 7277208 7277230 8 102 4.0 1.0 2.5 2.3 124 chr3L 7277106 exon unc-13-4A - chr3L 7277168 intron unc-13-4A - chr3L 7277230 intron unc-13-4A - chr3L_8_7275001 chr3L_7275001 RAL-239 628 chr3L 7462962 7462991 chr3L 7463039 7463070 4 78 1.0 1.5 1.2 1.8 108 chr3L 7462962 intergenic not near genes chr3L 7463016 intergenic not near genes chr3L 7463070 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-239 629 chr3L 7479747 7479785 chr3L 7479823 7479861 16 73 3.5 1.5 2.5 4.6 114 chr3L 7479747 intergenic not near genes chr3L 7479804 intergenic not near genes chr3L 7479861 intergenic not near genes chr3L_16_7475001 chr3L_7475001 RAL-239 630 chr3L 7505364 7505393 chr3L 7505441 7505471 6 78 3.0 0.5 1.8 2.1 107 chr3L 7505364 intergenic CG7548 - chr3L 7505418 intergenic CG7548 - chr3L 7505471 intergenic CG7548 - chr3L_6_7505001 chr3L_7505001 RAL-239 631 chr3L 7761428 7761455 chr3L 7761505 7761532 4 77 1.0 1.5 1.2 1.8 104 chr3L 7761428 intron Hn + chr3L 7761480 intron Hn + chr3L 7761532 intron Hn + chr3L_4_7760001 chr3L_7760001 RAL-239 632 chr3L 7886519 7886547 chr3L 7889037 7889065 Stalker4 5 2518 0.5 3.5 2.0 1.7 2546 chr3L 7886519 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-239 633 chr3L 7966734 7966759 chr3L 7966907 7966936 5 176 0.5 1.5 1.0 2.5 202 chr3L 7966734 intergenic not near genes chr3L 7966835 intergenic not near genes chr3L 7966936 intergenic not near genes chr3L_5_7965001 chr3L_7965001 RAL-239 634 chr3L 8295791 8295826 chr3L 8295949 8295984 7 158 3.5 1.5 2.5 2.0 193 chr3L 8295791 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295984 intergenic not near genes chr3L_7_8295001 chr3L_8295001 RAL-239 635 chr3L 8491657 8491663 chr3L 8491739 8491745 4 82 3.5 0.5 2.0 1.3 88 chr3L 8491657 intron CG43163 - chr3L 8491701 intron CG43163 - chr3L 8491745 intron CG43163 - chr3L_4_8490001 chr3L_8490001 RAL-239 636 chr3L 8791280 8791288 chr3L 8796699 8796708 I-element 5 5420 4.5 0.0 2.2 1.6 5428 chr3L 8791280 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796708 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-239 637 chr3L 8859336 8859348 chr3L 8859406 8859407 4 67 4.0 1.5 2.8 1.1 71 chr3L 8859336 intron dally + chr3L 8859372 intron dally + chr3L 8859407 intron dally + chr3L_4_8855001 chr3L_8855001 RAL-239 638 chr3L 9003965 9003975 chr3L 9004031 9004060 7 82 1.5 1.5 1.5 2.8 95 chr3L 9003965 intergenic not near genes chr3L 9004012 intergenic not near genes chr3L 9004060 intergenic not near genes chr3L_7_9000001 chr3L_9000001 RAL-239 639 chr3L 9013691 9013691 chr3L 18417066 18417066 5 9403375 28.0 10.5 19.2 0.2 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-239 640 chr3L 9076926 9076959 chr3L 9084486 9084519 412 6 7560 4.0 2.5 3.2 1.4 7593 chr3L 9076926 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084519 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-239 641 chr3L 9130561 9130574 chr3L 9134322 9134335 412 7 3761 4.5 4.5 4.5 1.3 3774 chr3L 9130561 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134335 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-239 642 chr3L 9219254 9219272 chr3L 9219914 9219942 jockey 5 667 3.5 4.5 4.0 1.0 688 chr3L 9219254 intergenic not near genes chr3L 9219598 intergenic not near genes chr3L 9219942 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-239 643 chr3L 9270624 9270643 chr3L 9278379 9278397 roo 6 7754 3.0 2.5 2.8 1.6 7773 chr3L 9270624 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278397 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-239 644 chr3L 9348466 9348703 chr3L 9348968 9349063 4 466 0.0 0.5 0.2 3.3 597 chr3L 9348466 intergenic PGRP-LC + chr3L 9348764 intergenic PGRP-LC + chr3L 9349063 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-239 645 chr3L 9524048 9524067 chr3L 9524110 9524147 11 76 2.5 3.0 2.8 2.9 99 chr3L 9524048 intron CG33700 - chr3L 9524098 intron CG33700 - chr3L 9524147 intron CG33700 - chr3L_11_9520001 chr3L_9520001 RAL-239 646 chr3L 9533755 9533782 chr3L 9541314 9541342 412 7 7556 1.0 8.0 4.5 1.3 7587 chr3L 9533755 intergenic not near genes chr3L 9537548 intergenic not near genes chr3L 9541342 intergenic not near genes chr3L_7_9535001 chr3L_9535001 RAL-239 647 chr3L 9575908 9575942 chr3L 9580986 9581013 jockey 6 5076 2.5 2.0 2.2 1.9 5105 chr3L 9575908 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-239 648 chr3L 9646809 9646822 chr3L 9646905 9646919 4 97 1.5 1.5 1.5 1.6 110 chr3L 9646809 intron,intron fry -,CG33696 + chr3L 9646864 intron,intron fry -,CG33696 + chr3L 9646919 intron,intron fry -,CG33696 + chr3L_4_9645001 chr3L_9645001 RAL-239 649 chr3L 9797238 9797261 chr3L 9797328 9797352 5 91 2.0 2.0 2.0 1.7 114 chr3L 9797238 intron Zasp67 - chr3L 9797295 intron Zasp67 - chr3L 9797352 intron Zasp67 - chr3L_5_9795001 chr3L_9795001 RAL-239 650 chr3L 9907879 9907892 chr3L 9907956 9907967 5 76 4.5 5.5 5.0 0.8 88 chr3L 9907879 intergenic CG34356 + chr3L 9907923 intergenic CG34356 + chr3L 9907967 intergenic CG34356 + chr3L_5_9905001 chr3L_9905001 RAL-239 651 chr3L 10032553 10032565 chr3L 10032640 10032652 4 87 0.0 1.5 0.8 2.2 99 chr3L 10032553 intron dpr6 + chr3L 10032602 intron dpr6 + chr3L 10032652 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-239 652 chr3L 10049548 10049573 chr3L 10049628 10049653 5 80 2.0 0.5 1.2 2.3 105 chr3L 10049548 intron dpr6 + chr3L 10049600 intron dpr6 + chr3L 10049653 intron dpr6 + chr3L_5_10045001 chr3L_10045001 RAL-239 653 chr3L 10191285 10191311 chr3L 10191396 10191422 6 111 7.0 3.0 5.0 1.0 137 chr3L 10191285 intron ect - chr3L 10191354 intron ect - chr3L 10191422 intron ect - chr3L_6_10190001 chr3L_10190001 RAL-239 654 chr3L 10308738 10308773 chr3L 10308815 10308849 10 77 2.0 2.5 2.2 3.1 111 chr3L 10308738 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308849 intergenic not near genes chr3L_10_10305001 chr3L_10305001 RAL-239 655 chr3L 10414948 10414955 chr3L 10417320 10417327 Doc 4 2372 4.0 3.5 3.8 0.8 2379 chr3L 10414948 intergenic CG12362 + chr3L 10416138 intergenic not near genes chr3L 10417327 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-239 656 chr3L 10414959 10414977 chr3L 10417319 10417344 Doc 6 2369 2.5 3.5 3.0 1.5 2385 chr3L 10414959 intergenic CG12362 + chr3L 10416152 intergenic not near genes chr3L 10417344 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-239 657 chr3L 10417570 10417605 chr3L 10417647 10417682 9 74 2.0 2.5 2.2 2.8 112 chr3L 10417570 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417682 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-239 658 chr3L 10469946 10469963 chr3L 10470022 10470039 6 76 0.0 4.0 2.0 2.0 93 chr3L 10469946 intergenic not near genes chr3L 10469992 intergenic not near genes chr3L 10470039 intergenic not near genes chr3L_6_10465001 chr3L_10465001 RAL-239 659 chr3L 10509481 10509514 chr3L 10509610 10509619 4 123 1.0 0.0 0.5 2.7 138 chr3L 10509481 intron A2bp1 + chr3L 10509550 intron A2bp1 + chr3L 10509619 intron A2bp1 + chr3L_4_10505001 chr3L_10505001 RAL-239 660 chr3L 10721990 10722022 chr3L 10722072 10722104 5 81 1.5 0.5 1.0 2.5 114 chr3L 10721990 intergenic not near genes chr3L 10722047 intergenic not near genes chr3L 10722104 intergenic not near genes chr3L_5_10720001 chr3L_10720001 RAL-239 661 chr3L 10762838 10762853 chr3L 10762922 10762922 6 80 2.5 3.5 3.0 1.5 84 chr3L 10762838 intergenic not near genes chr3L 10762880 intergenic not near genes chr3L 10762922 intergenic not near genes chr3L_6_10760001 chr3L_10760001 RAL-239 662 chr3L 11087059 11087075 chr3L 11088847 11088864 S-element 7 1789 1.0 1.0 1.0 3.5 1805 chr3L 11087059 intron JIL-1 - chr3L 11087962 intron JIL-1 - chr3L 11088864 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-239 663 chr3L 11135782 11135797 chr3L 11135864 11135881 5 84 1.0 3.5 2.2 1.6 99 chr3L 11135782 intergenic CG32082 +,CG14143 + chr3L 11135832 intergenic CG32082 +,CG14143 + chr3L 11135881 intergenic CG32082 +,CG14143 + chr3L_5_11135001 chr3L_11135001 RAL-239 664 chr3L 11277458 11277482 chr3L 11278453 11278477 Rt1a 8 993 2.0 1.5 1.8 2.9 1019 chr3L 11277458 intergenic not near genes chr3L 11277968 intergenic not near genes chr3L 11278477 intergenic not near genes chr3L_8_11275001 chr3L_11275001 RAL-239 665 chr3L 11356857 11356890 chr3L 11356946 11356978 11 87 3.5 0.5 2.0 3.7 121 chr3L 11356857 intergenic not near genes chr3L 11356918 intergenic not near genes chr3L 11356978 intergenic not near genes chr3L_11_11355001 chr3L_11355001 RAL-239 666 chr3L 11389706 11389728 chr3L 11389779 11389808 4 78 1.0 2.5 1.8 1.4 102 chr3L 11389706 intergenic not near genes chr3L 11389757 intergenic not near genes chr3L 11389808 intergenic not near genes chr3L_4_11385001 chr3L_11385001 RAL-239 667 chr3L 11435563 11435589 chr3L 11435732 11435758 10 169 1.0 2.5 1.8 3.6 195 chr3L 11435563 intergenic CR44548 +,CG6149 - chr3L 11435660 5` UTR CR44548 + chr3L 11435758 5` UTR CR44548 + chr3L_10_11435001 chr3L_11435001 RAL-239 668 chr3L 11579558 11579582 chr3L 11579663 11579688 5 105 2.0 2.5 2.2 1.6 130 chr3L 11579558 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579688 intergenic CG43390 - chr3L_5_11575001 chr3L_11575001 RAL-239 669 chr3L 11729677 11729705 chr3L 11729753 11729781 5 76 2.0 2.5 2.2 1.6 104 chr3L 11729677 exon CG32088 + chr3L 11729729 intron CG32088 + chr3L 11729781 exon CG32088 + chr3L_5_11725001 chr3L_11725001 RAL-239 670 chr3L 11740138 11740152 chr3L 11740235 11740250 8 98 7.5 8.0 7.8 0.9 112 chr3L 11740138 intron CG6024 - chr3L 11740194 intron CG6024 - chr3L 11740250 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-239 671 chr3L 11744018 11744039 chr3L 11744126 11744146 6 108 5.5 0.5 3.0 1.5 128 chr3L 11744018 exon CG6024 - chr3L 11744082 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-239 672 chr3L 11902476 11902483 chr3L 11902552 11902559 4 76 3.5 2.0 2.8 1.1 83 chr3L 11902476 intron CG44837 - chr3L 11902518 intron CG44837 - chr3L 11902559 intron CG44837 - chr3L_4_11900001 chr3L_11900001 RAL-239 673 chr3L 12013912 12013930 chr3L 12014003 12014020 9 91 5.5 1.0 3.2 2.1 108 chr3L 12013912 intron rols - chr3L 12013966 intron rols - chr3L 12014020 intron rols - chr3L_9_12010001 chr3L_12010001 RAL-239 674 chr3L 12091790 12091809 chr3L 12091914 12091945 5 132 2.0 0.0 1.0 2.5 155 chr3L 12091790 intergenic not near genes chr3L 12091868 intergenic not near genes chr3L 12091945 intergenic not near genes chr3L_5_12090001 chr3L_12090001 RAL-239 675 chr3L 12170811 12170819 chr3L 12170892 12170901 4 80 0.5 1.5 1.0 2.0 90 chr3L 12170811 intron Rh7 - chr3L 12170856 intron Rh7 - chr3L 12170901 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-239 676 chr3L 12223880 12223903 chr3L 12223956 12223979 4 74 3.5 1.0 2.2 1.2 99 chr3L 12223880 intron app - chr3L 12223930 intron app - chr3L 12223979 intron app - chr3L_4_12220001 chr3L_12220001 RAL-239 677 chr3L 12231373 12231406 chr3L 12231672 12231705 5 299 21.5 19.0 20.2 0.2 332 chr3L 12231373 intron app - chr3L 12231539 intron app - chr3L 12231705 intron app - chr3L_5_12230001 chr3L_12230001 RAL-239 678 chr3L 12304090 12304118 chr3L 12304166 12304194 10 76 2.0 3.0 2.5 2.9 104 chr3L 12304090 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_10_12300001 chr3L_12300001 RAL-239 679 chr3L 12312488 12312511 chr3L 12312562 12312589 8 75 4.5 4.5 4.5 1.5 101 chr3L 12312488 intergenic not near genes chr3L 12312538 intergenic not near genes chr3L 12312589 intergenic not near genes chr3L_8_12310001 chr3L_12310001 RAL-239 680 chr3L 12369543 12369556 chr3L 12369633 12369639 5 88 3.0 0.0 1.5 2.0 96 chr3L 12369543 intron Ncc69 - chr3L 12369591 intron Ncc69 - chr3L 12369639 intron Ncc69 - chr3L_5_12365001 chr3L_12365001 RAL-239 681 chr3L 12446271 12446283 chr3L 12446347 12446358 5 74 3.0 1.0 2.0 1.7 87 chr3L 12446271 intergenic not near genes chr3L 12446314 intergenic not near genes chr3L 12446358 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-239 682 chr3L 12460318 12460344 chr3L 12460395 12460421 4 77 0.0 3.0 1.5 1.6 103 chr3L 12460318 intergenic not near genes chr3L 12460370 intergenic not near genes chr3L 12460421 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-239 683 chr3L 12467254 12467284 chr3L 12467339 12467369 5 85 0.0 0.5 0.2 4.2 115 chr3L 12467254 intron eyg - chr3L 12467312 intron eyg - chr3L 12467369 intron eyg - chr3L_5_12465001 chr3L_12465001 RAL-239 684 chr3L 12491721 12491735 chr3L 12491804 12491818 4 83 0.0 1.5 0.8 2.2 97 chr3L 12491721 intergenic CG10657 -,CR45682 + chr3L 12491770 intergenic CG10657 -,CR45682 + chr3L 12491818 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-239 685 chr3L 12647952 12647978 chr3L 12648028 12648053 4 76 2.5 1.5 2.0 1.3 101 chr3L 12647952 5` UTR CR32111 + chr3L 12648002 5` UTR CR32111 + chr3L 12648053 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 RAL-239 686 chr3L 12712067 12712084 chr3L 12712467 12712483 6 400 6.5 18.0 12.2 0.5 416 chr3L 12712067 intergenic not near genes chr3L 12712275 intergenic not near genes chr3L 12712483 intergenic not near genes chr3L_6_12710001 chr3L_12710001 RAL-239 687 chr3L 12894805 12894821 chr3L 12894879 12894898 5 77 3.0 4.0 3.5 1.1 93 chr3L 12894805 intergenic CG14118 + chr3L 12894852 intergenic CG14118 + chr3L 12894898 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-239 688 chr3L 12898899 12898910 chr3L 12898975 12898986 4 76 1.5 10.0 5.8 0.6 87 chr3L 12898899 intergenic not near genes chr3L 12898942 intergenic not near genes chr3L 12898986 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-239 689 chr3L 12919276 12919300 chr3L 12924760 12924777 Rt1c 9 5481 9.5 0.0 4.8 1.6 5501 chr3L 12919276 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_9_12920001 chr3L_12920001 RAL-239 690 chr3L 12957798 12957816 chr3L 12962280 12962298 copia 4 4482 1.5 3.5 2.5 1.1 4500 chr3L 12957798 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-239 691 chr3L 13007697 13007722 chr3L 13007773 13007801 6 78 0.5 1.0 0.8 3.3 104 chr3L 13007697 exon CG11263 + chr3L 13007749 3` UTR CG11263 + chr3L 13007801 3` UTR CG11263 + chr3L_6_13005001 chr3L_13005001 RAL-239 692 chr3L 13067539 13067559 chr3L 13067615 13067635 5 76 4.0 0.5 2.2 1.6 96 chr3L 13067539 intergenic not near genes chr3L 13067587 intergenic not near genes chr3L 13067635 intergenic not near genes chr3L_5_13065001 chr3L_13065001 RAL-239 693 chr3L 13137657 13137674 chr3L 13137741 13137762 5 86 6.0 2.5 4.2 1.0 105 chr3L 13137657 intergenic not near genes chr3L 13137710 intergenic not near genes chr3L 13137762 intergenic not near genes chr3L_5_13135001 chr3L_13135001 RAL-239 694 chr3L 13137675 13137680 chr3L 13137739 13137768 4 76 5.5 2.5 4.0 0.8 93 chr3L 13137675 intergenic not near genes chr3L 13137722 intergenic not near genes chr3L 13137768 intergenic not near genes chr3L_4_13135001 chr3L_13135001 RAL-239 695 chr3L 13265187 13265213 chr3L 13265264 13265291 4 78 0.5 1.0 0.8 2.2 104 chr3L 13265187 5` UTR caps + chr3L 13265239 5` UTR caps + chr3L 13265291 5` UTR caps + chr3L_4_13265001 chr3L_13265001 RAL-239 696 chr3L 13267284 13267306 chr3L 13267397 13267419 6 112 3.0 1.5 2.2 1.9 135 chr3L 13267284 intron caps + chr3L 13267352 intron caps + chr3L 13267419 intron caps + chr3L_6_13265001 chr3L_13265001 RAL-239 697 chr3L 13525162 13525187 chr3L 13532958 13532982 roo 10 7796 1.5 4.5 3.0 2.5 7820 chr3L 13525162 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532982 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-239 698 chr3L 14185155 14185186 chr3L 14185231 14185262 12 74 2.0 2.5 2.2 3.8 107 chr3L 14185155 intergenic not near genes chr3L 14185208 intergenic not near genes chr3L 14185262 intergenic not near genes chr3L_12_14185001 chr3L_14185001 RAL-239 699 chr3L 14248480 14248507 chr3L 14248558 14248584 10 77 1.0 3.0 2.0 3.3 104 chr3L 14248480 intergenic not near genes chr3L 14248532 intergenic not near genes chr3L 14248584 intergenic not near genes chr3L_10_14245001 chr3L_14245001 RAL-239 700 chr3L 14295985 14295994 chr3L 14296471 14296479 roo 4 485 8.5 2.5 5.5 0.6 494 chr3L 14295985 intron fz + chr3L 14296232 intron fz + chr3L 14296479 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-239 701 chr3L 14295995 14296014 chr3L 14296470 14296500 roo 10 482 6.5 2.5 4.5 1.8 505 chr3L 14295995 intron fz + chr3L 14296248 intron fz + chr3L 14296500 intron fz + chr3L_10_14295001 chr3L_14295001 RAL-239 702 chr3L 14356527 14356550 chr3L 14356607 14356630 6 80 3.0 2.5 2.8 1.6 103 chr3L 14356527 intron fz + chr3L 14356578 intron fz + chr3L 14356630 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-239 703 chr3L 14468448 14468474 chr3L 14473654 14473680 copia 5 5206 0.5 1.0 0.8 2.8 5232 chr3L 14468448 intron bbg - chr3L 14471064 intron bbg - chr3L 14473680 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-239 704 chr3L 14486021 14486047 chr3L 14486101 14486121 6 79 2.5 0.5 1.5 2.4 100 chr3L 14486021 intron bbg - chr3L 14486071 intron bbg - chr3L 14486121 intron bbg - chr3L_6_14485001 chr3L_14485001 RAL-239 705 chr3L 14591092 14591101 chr3L 14591156 14591181 7 75 4.5 0.0 2.2 2.2 89 chr3L 14591092 intron HGTX - chr3L 14591136 intron HGTX - chr3L 14591181 intron HGTX - chr3L_7_14590001 chr3L_14590001 RAL-239 706 chr3L 14618408 14618422 chr3L 14618623 14618637 7 214 3.0 0.0 1.5 2.8 229 chr3L 14618408 intron shd + chr3L 14618522 intron shd + chr3L 14618637 intron shd + chr3L_7_14615001 chr3L_14615001 RAL-239 707 chr3L 14721179 14721205 chr3L 14723022 14723047 Rt1c 7 1842 3.0 3.5 3.2 1.7 1868 chr3L 14721179 intron ome + chr3L 14722113 intron ome + chr3L 14723047 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-239 708 chr3L 14729524 14729548 chr3L 14729633 14729661 6 110 1.5 0.5 1.0 3.0 137 chr3L 14729524 intron ome + chr3L 14729592 intron ome + chr3L 14729661 intron ome + chr3L_6_14725001 chr3L_14725001 RAL-239 709 chr3L 14731318 14731346 chr3L 14731735 14731760 8 414 1.0 2.5 1.8 2.9 442 chr3L 14731318 intron ome + chr3L 14731539 intron ome + chr3L 14731760 intron ome + chr3L_8_14730001 chr3L_14730001 RAL-239 710 chr3L 14731787 14731818 chr3L 14732289 14732316 8 499 0.5 3.5 2.0 2.7 529 chr3L 14731787 intron ome + chr3L 14732052 intron ome + chr3L 14732316 intron ome + chr3L_8_14730001 chr3L_14730001 RAL-239 711 chr3L 15000452 15000471 chr3L 15000532 15000551 7 79 5.5 1.5 3.5 1.6 99 chr3L 15000452 intron Prosbeta2 + chr3L 15000502 intron Prosbeta2 + chr3L 15000551 intron Prosbeta2 + chr3L_7_15000001 chr3L_15000001 RAL-239 712 chr3L 15333146 15333335 chr3L 15333226 15333414 5 79 2.5 2.5 2.5 1.4 268 chr3L 15333146 intergenic CR43247 + chr3L 15333280 intergenic CR43247 + chr3L 15333414 intergenic not near genes chr3L_5_15330001 chr3L_15330001 RAL-239 713 chr3L 15444654 15444684 chr3L 15444748 15444775 11 93 2.0 2.5 2.2 3.4 121 chr3L 15444654 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444775 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-239 714 chr3L 15466041 15466139 chr3L 15466122 15466231 4 84 0.0 0.0 0.0 4.0 190 chr3L 15466041 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466231 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-239 715 chr3L 15541618 15541636 chr3L 15541709 15541727 6 91 4.0 1.0 2.5 1.7 109 chr3L 15541618 intron CrebA + chr3L 15541672 intron CrebA + chr3L 15541727 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-239 716 chr3L 15773503 15773536 chr3L 15773732 15773765 8 229 0.5 1.5 1.0 4.0 262 chr3L 15773503 intergenic not near genes chr3L 15773634 intergenic not near genes chr3L 15773765 intergenic not near genes chr3L_8_15770001 chr3L_15770001 RAL-239 717 chr3L 16184107 16184141 chr3L 16188926 16188959 X-element 8 4818 1.0 3.5 2.2 2.5 4852 chr3L 16184107 intergenic not near genes chr3L 16186533 intergenic not near genes chr3L 16188959 intergenic not near genes chr3L_8_16185001 chr3L_16185001 RAL-239 718 chr3L 16279087 16279089 chr3L 16279168 16279170 5 81 3.5 1.0 2.2 1.6 83 chr3L 16279087 intron CG13050 - chr3L 16279128 intron CG13050 - chr3L 16279170 intron CG13050 - chr3L_5_16275001 chr3L_16275001 RAL-239 719 chr3L 16443850 16443867 chr3L 16446190 16446207 Doc 4 2340 1.5 3.5 2.5 1.1 2357 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445028 intron,intron CG33158 +,dsx-c73A - chr3L 16446207 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-239 720 chr3L 16493978 16494010 chr3L 16494495 16494527 jockey 16 516 3.5 4.5 4.0 3.2 549 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_16_16490001 chr3L_16490001 RAL-239 721 chr3L 16498531 16498553 chr3L 16498639 16498661 6 108 5.0 3.0 4.0 1.2 130 chr3L 16498531 intron,exon CG43373 -,st + chr3L 16498596 intron,intron CG43373 -,st + chr3L 16498661 intron,intron CG43373 -,st + chr3L_6_16495001 chr3L_16495001 RAL-239 722 chr3L 16544271 16544301 chr3L 16544366 16544389 12 94 1.0 2.0 1.5 4.8 118 chr3L 16544271 intergenic CG13033 - chr3L 16544330 intergenic CG13033 - chr3L 16544389 intergenic CG13033 - chr3L_12_16540001 chr3L_16540001 RAL-239 723 chr3L 16616514 16616529 chr3L 16621842 16621857 297 5 5328 1.0 3.5 2.2 1.6 5343 chr3L 16616514 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621857 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-239 724 chr3L 16818751 16818772 chr3L 16818827 16818847 4 76 1.5 2.5 2.0 1.3 96 chr3L 16818751 intron,intron nudC +,CG13024 - chr3L 16818799 intron,intron nudC +,CG13024 - chr3L 16818847 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-239 725 chr3L 16861032 16861053 chr3L 16861132 16861155 6 101 3.5 3.5 3.5 1.3 123 chr3L 16861032 intron,exon Rh4 -,CG13029 + chr3L 16861094 intron,intron Rh4 -,CG13029 + chr3L 16861155 intron,exon Rh4 -,CG13029 + chr3L_6_16860001 chr3L_16860001 RAL-239 726 chr3L 16945726 16945761 chr3L 16954879 16954897 roo 18 9147 3.0 2.0 2.5 5.1 9171 chr3L 16945726 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954897 5` UTR Nc73EF + chr3L_18_16950001 chr3L_16950001 RAL-239 727 chr3L 17026792 17026820 chr3L 17026873 17026901 7 81 1.5 1.0 1.2 3.2 109 chr3L 17026792 exon Fit2 + chr3L 17026846 3` UTR Fit2 + chr3L 17026901 3` UTR Fit2 + chr3L_7_17025001 chr3L_17025001 RAL-239 728 chr3L 17272242 17272261 chr3L 17272375 17272394 7 133 4.0 1.0 2.5 2.0 152 chr3L 17272242 intergenic not near genes chr3L 17272318 intergenic not near genes chr3L 17272394 intergenic not near genes chr3L_7_17270001 chr3L_17270001 RAL-239 729 chr3L 17414534 17414545 chr3L 17414980 17414998 5 450 2.0 0.5 1.2 2.3 464 chr3L 17414534 intron blot - chr3L 17414766 intron blot - chr3L 17414998 intron blot - chr3L_5_17410001 chr3L_17410001 RAL-239 730 chr3L 17510740 17510763 chr3L 17510824 17510838 9 81 1.0 7.0 4.0 1.8 98 chr3L 17510740 exon Oatp74D + chr3L 17510789 intron Oatp74D + chr3L 17510838 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-239 731 chr3L 17516984 17517007 chr3L 17524542 17524564 412 7 7557 2.0 3.5 2.8 1.8 7580 chr3L 17516984 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-239 732 chr3L 17837624 17837656 chr3L 17837711 17837744 16 88 2.5 4.0 3.2 3.8 120 chr3L 17837624 exon Grd + chr3L 17837684 intron Grd + chr3L 17837744 exon Grd + chr3L_16_17835001 chr3L_17835001 RAL-239 733 chr3L 17896618 17896639 chr3L 17896689 17896716 11 76 1.5 3.0 2.2 3.4 98 chr3L 17896618 intergenic not near genes chr3L 17896667 intergenic not near genes chr3L 17896716 intergenic not near genes chr3L_11_17895001 chr3L_17895001 RAL-239 734 chr3L 17938609 17938633 chr3L 17938706 17938729 8 97 1.0 2.5 1.8 2.9 120 chr3L 17938609 intron CG43174 + chr3L 17938669 intron CG43174 + chr3L 17938729 intron CG43174 + chr3L_8_17935001 chr3L_17935001 RAL-239 735 chr3L 17990101 17990131 chr3L 17990177 17990178 10 71 4.5 0.5 2.5 2.9 77 chr3L 17990101 intron Eip75B - chr3L 17990140 intron Eip75B - chr3L 17990178 intron Eip75B - chr3L_10_17990001 chr3L_17990001 RAL-239 736 chr3L 18042248 18042269 chr3L 18042326 18042347 4 78 2.5 0.5 1.5 1.6 99 chr3L 18042248 intron Eip75B - chr3L 18042298 intron Eip75B - chr3L 18042347 intron Eip75B - chr3L_4_18040001 chr3L_18040001 RAL-239 737 chr3L 18063123 18063157 chr3L 18063218 18063252 8 95 2.0 2.0 2.0 2.7 129 chr3L 18063123 intron Eip75B - chr3L 18063188 intron Eip75B - chr3L 18063252 intron Eip75B - chr3L_8_18060001 chr3L_18060001 RAL-239 738 chr3L 18420067 18420096 chr3L 18420148 18420178 8 83 1.0 4.0 2.5 2.3 111 chr3L 18420067 intergenic not near genes chr3L 18420122 intergenic not near genes chr3L 18420178 intergenic not near genes chr3L_8_18420001 chr3L_18420001 RAL-239 739 chr3L 18511891 18511907 chr3L 18511983 18511998 4 92 1.5 2.5 2.0 1.3 107 chr3L 18511891 intergenic not near genes chr3L 18511944 intergenic not near genes chr3L 18511998 intergenic not near genes chr3L_4_18510001 chr3L_18510001 RAL-239 740 chr3L 18538629 18538656 chr3L 18539122 18539148 12 489 0.5 0.5 0.5 8.0 519 chr3L 18538629 intergenic not near genes chr3L 18538888 intergenic not near genes chr3L 18539148 intergenic not near genes chr3L_12_18535001 chr3L_18535001 RAL-239 741 chr3L 18656186 18656208 chr3L 18656270 18656290 7 84 5.0 2.5 3.8 1.5 104 chr3L 18656186 intron MYPT-75D + chr3L 18656238 intron MYPT-75D + chr3L 18656290 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-239 742 chr3L 18721773 18721803 chr3L 18721864 18721894 5 91 2.0 0.5 1.2 2.3 121 chr3L 18721773 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721894 3` UTR CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-239 743 chr3L 18738666 18738698 chr3L 18738749 18738786 4 87 1.5 0.5 1.0 2.0 120 chr3L 18738666 intergenic not near genes chr3L 18738726 intergenic not near genes chr3L 18738786 intergenic not near genes chr3L_4_18735001 chr3L_18735001 RAL-239 744 chr3L 18772407 18772435 chr3L 18781088 18781116 roo 7 8680 3.0 3.0 3.0 1.8 8709 chr3L 18772407 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781116 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-239 745 chr3L 18929961 18929988 chr3L 18930045 18930071 4 84 1.0 0.5 0.8 2.2 110 chr3L 18929961 intron CG32204 - chr3L 18930016 intron CG32204 - chr3L 18930071 exon CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-239 746 chr3L 18962608 18962631 chr3L 18962944 18962967 7 336 0.0 0.0 0.0 7.0 359 chr3L 18962608 intergenic not near genes chr3L 18962788 intergenic not near genes chr3L 18962967 intergenic not near genes chr3L_7_18960001 chr3L_18960001 RAL-239 747 chr3L 18972394 18972428 chr3L 18972470 18972504 14 74 4.0 5.5 4.8 2.4 110 chr3L 18972394 intergenic not near genes chr3L 18972449 intergenic not near genes chr3L 18972504 intergenic not near genes chr3L_14_18970001 chr3L_18970001 RAL-239 748 chr3L 19082035 19082071 chr3L 19082137 19082173 11 102 2.0 0.5 1.2 5.0 138 chr3L 19082035 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082173 intron Mkp3 - chr3L_11_19080001 chr3L_19080001 RAL-239 749 chr3L 19109552 19109584 chr3L 19109628 19109659 7 76 3.5 2.0 2.8 1.8 107 chr3L 19109552 intron CG14082 - chr3L 19109606 intron CG14082 - chr3L 19109659 intron CG14082 - chr3L_7_19105001 chr3L_19105001 RAL-239 750 chr3L 19115636 19115671 chr3L 19115816 19115851 BS 8 180 2.5 1.5 2.0 2.7 215 chr3L 19115636 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115851 intron CG14082 - chr3L_8_19115001 chr3L_19115001 RAL-239 751 chr3L 19117040 19117076 chr3L 19124487 19124523 mdg1 9 7444 2.5 2.0 2.2 2.8 7483 chr3L 19117040 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-239 752 chr3L 19182385 19182405 chr3L 19182466 19182485 5 79 0.0 2.0 1.0 2.5 100 chr3L 19182385 intron fz2 - chr3L 19182435 intron fz2 - chr3L 19182485 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-239 753 chr3L 19269820 19269848 chr3L 19270019 19270020 12 196 2.5 2.5 2.5 3.4 200 chr3L 19269820 intron,exon CG14085 +,CG14088 - chr3L 19269920 intron,exon CG14085 +,CG14088 - chr3L 19270020 intron,exon CG14085 +,CG14088 - chr3L_12_19265001 chr3L_19265001 RAL-239 754 chr3L 19328799 19328830 chr3L 19328975 19329001 8 174 2.0 0.5 1.2 3.6 202 chr3L 19328799 intron pip - chr3L 19328900 intron pip - chr3L 19329001 intron pip - chr3L_8_19325001 chr3L_19325001 RAL-239 755 chr3L 19426750 19426764 chr3L 19426828 19426842 10 77 9.5 8.0 8.8 1.0 92 chr3L 19426750 intergenic not near genes chr3L 19426796 intergenic not near genes chr3L 19426842 intergenic not near genes chr3L_10_19425001 chr3L_19425001 RAL-239 756 chr3L 19426765 19426782 chr3L 19426824 19426850 9 70 5.5 6.5 6.0 1.3 85 chr3L 19426765 intergenic not near genes chr3L 19426808 intergenic not near genes chr3L 19426850 intergenic not near genes chr3L_9_19425001 chr3L_19425001 RAL-239 757 chr3L 19676085 19676106 chr3L 19676163 19676185 8 78 1.5 0.0 0.8 4.4 100 chr3L 19676085 intergenic not near genes chr3L 19676135 intergenic not near genes chr3L 19676185 intergenic not near genes chr3L_8_19675001 chr3L_19675001 RAL-239 758 chr3L 19695429 19695454 chr3L 19695507 19695532 6 77 3.0 2.5 2.8 1.6 103 chr3L 19695429 intergenic verm - chr3L 19695480 intergenic verm - chr3L 19695532 intergenic verm - chr3L_6_19695001 chr3L_19695001 RAL-239 759 chr3L 19845740 19845766 chr3L 19845826 19845853 8 86 1.0 0.5 0.8 4.4 113 chr3L 19845740 intron Papss + chr3L 19845796 intron Papss + chr3L 19845853 intron Papss + chr3L_8_19845001 chr3L_19845001 RAL-239 760 chr3L 20143083 20143113 chr3L 20143163 20143193 5 80 1.0 1.0 1.0 2.5 110 chr3L 20143083 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143193 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-239 761 chr3L 20257341 20257363 chr3L 20258461 20258483 pogo 4 1120 2.0 0.0 1.0 2.0 1142 chr3L 20257341 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258483 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-239 762 chr3L 20386942 20386971 chr3L 20387044 20387073 4 102 3.0 1.5 2.2 1.2 131 chr3L 20386942 intron fbl + chr3L 20387008 intron fbl + chr3L 20387073 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-239 763 chr3L 20444820 20444844 chr3L 20444943 20444966 5 123 2.0 0.5 1.2 2.3 146 chr3L 20444820 intron CG5910 + chr3L 20444893 intron CG5910 + chr3L 20444966 intron CG5910 + chr3L_5_20440001 chr3L_20440001 RAL-239 764 chr3L 20548366 20548386 chr3L 20548455 20548475 10 89 1.0 0.5 0.8 5.6 109 chr3L 20548366 intergenic not near genes chr3L 20548420 intergenic not near genes chr3L 20548475 intergenic not near genes chr3L_10_20545001 chr3L_20545001 RAL-239 765 chr3L 20710758 20710793 chr3L 20710835 20710870 9 77 0.5 2.0 1.2 4.1 112 chr3L 20710758 intergenic not near genes chr3L 20710814 intergenic not near genes chr3L 20710870 intergenic not near genes chr3L_9_20710001 chr3L_20710001 RAL-239 766 chr3L 20849285 20849293 chr3L 20849364 20849372 4 79 1.0 0.5 0.8 2.2 87 chr3L 20849285 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849372 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-239 767 chr3L 20913749 20913777 chr3L 20913829 20913859 11 82 2.0 2.0 2.0 3.7 110 chr3L 20913749 intergenic CR43930 - chr3L 20913804 intergenic CR43930 - chr3L 20913859 intergenic CR43930 - chr3L_11_20910001 chr3L_20910001 RAL-239 768 chr3L 21014923 21014934 chr3L 21023403 21023414 Tirant 8 8480 5.5 5.5 5.5 1.2 8491 chr3L 21014923 intron skd - chr3L 21019168 intron skd - chr3L 21023414 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-239 769 chr3L 21082216 21082239 chr3L 21082294 21082317 6 77 0.0 5.0 2.5 1.7 101 chr3L 21082216 intron ko - chr3L 21082266 intron ko - chr3L 21082317 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-239 770 chr3L 21151877 21151895 chr3L 21156961 21156979 flea 8 5084 2.0 2.5 2.2 2.5 5102 chr3L 21151877 intron Ac78C - chr3L 21154428 intron Ac78C - chr3L 21156979 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-239 771 chr3L 21158523 21158552 chr3L 21158659 21158689 5 136 1.5 0.5 1.0 2.5 166 chr3L 21158523 intron Ac78C - chr3L 21158606 intron Ac78C - chr3L 21158689 intron Ac78C - chr3L_5_21155001 chr3L_21155001 RAL-239 772 chr3L 21161430 21161457 chr3L 21161508 21161536 6 78 1.5 1.0 1.2 2.7 106 chr3L 21161430 intron Ac78C - chr3L 21161483 intron Ac78C - chr3L 21161536 intron Ac78C - chr3L_6_21160001 chr3L_21160001 RAL-239 773 chr3L 21251532 21251565 chr3L 21251616 21251649 6 84 4.0 3.5 3.8 1.2 117 chr3L 21251532 intron Eip78C + chr3L 21251590 intron Eip78C + chr3L 21251649 intron Eip78C + chr3L_6_21250001 chr3L_21250001 RAL-239 774 chr3L 21415138 21415162 chr3L 21415221 21415245 6 83 1.5 1.5 1.5 2.4 107 chr3L 21415138 intron rgn + chr3L 21415192 intron rgn + chr3L 21415245 intron rgn + chr3L_6_21415001 chr3L_21415001 RAL-239 775 chr3L 21498841 21498869 chr3L 21500477 21500500 1360 11 1635 3.0 4.0 3.5 2.4 1659 chr3L 21498841 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500500 intron Glg1 - chr3L_11_21495001 chr3L_21495001 RAL-239 776 chr3L 21649783 21649801 chr3L 21650007 21650025 10 222 1.0 5.0 3.0 2.5 242 chr3L 21649783 intron CG43980 + chr3L 21649904 intron CG43980 + chr3L 21650025 intron CG43980 + chr3L_10_21645001 chr3L_21645001 RAL-239 777 chr3L 21653521 21653535 chr3L 21653600 21653614 8 78 5.5 5.0 5.2 1.3 93 chr3L 21653521 intron CG43980 + chr3L 21653568 intron CG43980 + chr3L 21653614 intron CG43980 + chr3L_8_21650001 chr3L_21650001 RAL-239 778 chr3L 21905485 21905510 chr3L 21905587 21905604 7 100 4.0 1.0 2.5 2.0 119 chr3L 21905485 intron mub + chr3L 21905544 intron mub + chr3L 21905604 intron mub + chr3L_7_21905001 chr3L_21905001 RAL-239 779 chr3L 22056198 22056231 chr3L 22056551 22056585 9 350 3.5 5.0 4.2 1.7 387 chr3L 22056198 intron Oct-TyrR + chr3L 22056392 intron Oct-TyrR + chr3L 22056585 intron Oct-TyrR + chr3L_9_22055001 chr3L_22055001 RAL-239 780 chr3L 22169462 22169489 chr3L 22169555 22169581 6 93 0.5 2.0 1.2 2.7 119 chr3L 22169462 intron olf413 + chr3L 22169522 intron olf413 + chr3L 22169581 intron olf413 + chr3L_6_22165001 chr3L_22165001 RAL-239 781 chr3L 22255902 22255930 chr3L 22255982 22256002 11 77 5.5 3.0 4.2 2.1 100 chr3L 22255902 intergenic not near genes chr3L 22255952 intergenic not near genes chr3L 22256002 intergenic not near genes chr3L_11_22255001 chr3L_22255001 RAL-239 782 chr3L 22309079 22309094 chr3L 22309164 22309176 5 83 2.0 4.0 3.0 1.2 97 chr3L 22309079 intron Ten-m - chr3L 22309128 intron Ten-m - chr3L 22309176 intron Ten-m - chr3L_5_22305001 chr3L_22305001 RAL-239 783 chr3L 22309096 22309103 chr3L 22309163 22309185 4 75 1.5 4.0 2.8 1.1 89 chr3L 22309096 intron Ten-m - chr3L 22309140 intron Ten-m - chr3L 22309185 intron Ten-m - chr3L_4_22305001 chr3L_22305001 RAL-239 784 chr3L 22358392 22358415 chr3L 22358466 22358500 6 84 1.5 2.0 1.8 2.1 108 chr3L 22358392 intron Ten-m - chr3L 22358446 intron Ten-m - chr3L 22358500 intron Ten-m - chr3L_6_22355001 chr3L_22355001 RAL-239 785 chr3L 22366707 22366742 chr3L 22366785 22366820 6 78 2.0 0.5 1.2 2.7 113 chr3L 22366707 intron Ten-m - chr3L 22366764 intron Ten-m - chr3L 22366820 intron Ten-m - chr3L_6_22365001 chr3L_22365001 RAL-239 786 chr3L 22413881 22413900 chr3L 22413964 22413984 7 84 2.5 3.5 3.0 1.8 103 chr3L 22413881 intergenic not near genes chr3L 22413932 intergenic not near genes chr3L 22413984 intergenic not near genes chr3L_7_22410001 chr3L_22410001 RAL-239 787 chr3L 22507128 22507151 chr3L 22507212 22507236 6 86 4.5 2.5 3.5 1.3 108 chr3L 22507128 intergenic not near genes chr3L 22507182 intergenic not near genes chr3L 22507236 intergenic not near genes chr3L_6_22505001 chr3L_22505001 RAL-239 788 chr3L 22555792 22555802 chr3L 22563239 22563272 blood 6 7456 4.5 0.5 2.5 1.7 7480 chr3L 22555792 intergenic not near genes chr3L 22559532 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-239 789 chr3L 22570425 22570457 chr3L 22570569 22570601 7 143 1.5 3.5 2.5 2.0 176 chr3L 22570425 intergenic not near genes chr3L 22570513 intergenic not near genes chr3L 22570601 intergenic not near genes chr3L_7_22570001 chr3L_22570001 RAL-239 790 chr3L 22577627 22577645 chr3L 22582409 22582433 Doc 7 4786 5.0 5.0 5.0 1.2 4806 chr3L 22577627 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582433 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-239 791 chr3L 22617189 22617221 chr3L 22624641 22624673 blood 7 7451 3.5 2.0 2.8 1.8 7484 chr3L 22617189 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-239 792 chr3L 22652319 22652352 chr3L 22652457 22652490 16 136 3.5 2.0 2.8 4.2 171 chr3L 22652319 exon CG33772 - chr3L 22652404 intron CG33772 - chr3L 22652490 exon CG33772 - chr3L_16_22650001 chr3L_22650001 RAL-239 793 chr3L 22678075 22678099 chr3L 22678168 22678187 6 88 8.0 1.0 4.5 1.1 112 chr3L 22678075 intron CG14457 + chr3L 22678131 intron CG14457 + chr3L 22678187 intron CG14457 + chr3L_6_22675001 chr3L_22675001 RAL-239 794 chr3L 22756400 22756432 chr3L 22756477 22756485 9 73 2.5 3.5 3.0 2.2 85 chr3L 22756400 intron SPoCk + chr3L 22756442 intron SPoCk + chr3L 22756485 intron SPoCk + chr3L_9_22755001 chr3L_22755001 RAL-239 795 chr3L 22838587 22838621 chr3L 22838668 22838698 13 79 2.5 2.0 2.2 4.1 111 chr3L 22838587 intergenic CG11226 + chr3L 22838642 intergenic CG11226 + chr3L 22838698 intergenic not near genes chr3L_13_22835001 chr3L_22835001 RAL-239 796 chr3L 22853469 22853720 chr3L 22853556 22853805 16 86 1.5 2.5 2.0 5.3 336 chr3L 22853469 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853637 5` UTR CR43426 + chr3L 22853805 5` UTR CR43426 + chr3L_16_22850001 chr3L_22850001 RAL-239 797 chr3L 22865987 22866011 chr3L 22867120 22867143 Doc 7 1132 1.5 1.5 1.5 2.8 1156 chr3L 22865987 intron CG33170 + chr3L 22866565 intron CG33170 + chr3L 22867143 intron CG33170 + chr3L_7_22865001 chr3L_22865001 RAL-239 798 chr3L 19220633 19220637 chr3L 22908066 22908067 20 3687431 17.5 10.0 13.8 1.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_20_21060001 chr3L_21060001 RAL-239 799 chr3L 22921375 22921402 chr3L 22921451 22921475 12 76 4.5 4.5 4.5 2.2 100 chr3L 22921375 intron CG12768 + chr3L 22921425 intron CG12768 + chr3L 22921475 intron CG12768 + chr3L_12_22920001 chr3L_22920001 RAL-239 800 chr3L 22966421 22966451 chr3L 22966645 22966675 7 223 1.5 1.5 1.5 2.8 254 chr3L 22966421 intergenic not near genes chr3L 22966548 intergenic not near genes chr3L 22966675 intergenic not near genes chr3L_7_22965001 chr3L_22965001 RAL-239 801 chr3L 23875526 23875552 chr3L 23875607 23875625 9 79 2.0 2.0 2.0 3.0 99 chr3L 23875526 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875625 intron CG40470 - chr3L_9_23875001 chr3L_23875001 RAL-239 802 chr3L 24168798 24168807 chr3L 24176120 24176130 ZAM 4 7324 8.0 6.5 7.2 0.5 7332 chr3L 24168798 intron Snap25 + chr3L 24172464 intron Snap25 + chr3L 24176130 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-239 803 chr3L 24168810 24168822 chr3L 24176119 24176134 ZAM 6 7318 5.0 6.0 5.5 0.9 7324 chr3L 24168810 intron Snap25 + chr3L 24172472 intron Snap25 + chr3L 24176134 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-239 804 chr3L 27390689 27390707 chr3L 27390768 27390779 8 78 30.0 26.5 28.2 0.3 90 chr3L 27390689 intron Dbp80 + chr3L 27390734 intron Dbp80 + chr3L 27390779 intron Dbp80 + chr3L_8_27390001 chr3L_27390001 RAL-239 805 chr3R 1521168 1521181 chr3R 1521243 1521247 12 83 8.0 7.5 7.8 1.4 79 chr3R 1521168 intergenic not near genes chr3R 1521208 intergenic not near genes chr3R 1521247 intergenic not near genes chr3R_12_1520001 chr3R_1520001 RAL-239 806 chr3R 2534151 2534156 chr3R 2541719 2541725 6 7568 13.5 16.5 15.0 0.4 7574 chr3R 2534151 intergenic not near genes chr3R 2537938 intergenic not near genes chr3R 2541725 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-239 807 chr3R 2534158 2534167 chr3R 2541701 2541736 12 7556 12.0 14.0 13.0 0.9 7578 chr3R 2534158 intergenic not near genes chr3R 2537947 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_12_2535001 chr3R_2535001 RAL-239 808 chr3R 3178700 3178715 chr3R 3595184 3595185 10 416482 7.0 12.5 9.8 0.9 416485 chr3R 3178700 intron CG42617 - chr3R 3386942 intergenic not near genes chr3R 3595185 intergenic not near genes chr3R_10_3385001 chr3R_3385001 RAL-239 809 chr3R 4063817 4063830 chr3R 4069094 4069110 4 5279 3.5 7.5 5.5 0.6 5293 chr3R 4063817 intergenic not near genes chr3R 4066464 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-239 810 chr3R 4229795 4229809 chr3R 4230184 4230199 4 390 2.0 0.0 1.0 2.0 404 chr3R 4229795 intergenic not near genes chr3R 4229997 intergenic not near genes chr3R 4230199 intergenic not near genes chr3R_4_4225001 chr3R_4225001 RAL-239 811 chr3R 4609548 4609573 chr3R 4610709 4610737 1360 6 1164 3.0 2.5 2.8 1.6 1189 chr3R 4609548 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610737 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-239 812 chr3R 4722360 4722375 chr3R 4722497 4722504 4 135 0.0 2.5 1.2 1.8 144 chr3R 4722360 intron Nep2 - chr3R 4722432 intron Nep2 - chr3R 4722504 intron Nep2 - chr3R_4_4720001 chr3R_4720001 RAL-239 813 chr3R 4739115 4739142 chr3R 4739192 4739219 6 76 3.0 3.5 3.2 1.4 104 chr3R 4739115 intron tacc - chr3R 4739167 intron tacc - chr3R 4739219 intron tacc - chr3R_6_4735001 chr3R_4735001 RAL-239 814 chr3R 4769162 4769185 chr3R 4769240 4769263 11 76 2.5 1.5 2.0 3.7 101 chr3R 4769162 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_11_4765001 chr3R_4765001 RAL-239 815 chr3R 4861569 4861592 chr3R 4861650 4861673 6 78 6.0 6.0 6.0 0.9 104 chr3R 4861569 intron opa + chr3R 4861621 intron opa + chr3R 4861673 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-239 816 chr3R 4887481 4887508 chr3R 4894857 4894884 rover 4 7376 0.5 0.0 0.2 3.3 7403 chr3R 4887481 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894884 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-239 817 chr3R 4896291 4896320 chr3R 4896384 4896413 4 93 1.0 0.5 0.8 2.2 122 chr3R 4896291 intergenic CR45580 + chr3R 4896352 intergenic CR45580 + chr3R 4896413 intergenic CR45580 + chr3R_4_4895001 chr3R_4895001 RAL-239 818 chr3R 4976188 4976217 chr3R 4976540 4976569 12 352 13.5 19.5 16.5 0.7 381 chr3R 4976188 intergenic not near genes chr3R 4976378 intergenic not near genes chr3R 4976569 intergenic not near genes chr3R_12_4975001 chr3R_4975001 RAL-239 819 chr3R 5045857 5045872 chr3R 5052959 5052974 HMS-Beagle 7 7102 3.0 2.0 2.5 2.0 7117 chr3R 5045857 intron CR43635 - chr3R 5049416 intergenic not near genes chr3R 5052974 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-239 820 chr3R 5067992 5068009 chr3R 5073509 5073526 mdg3 7 5517 1.5 1.0 1.2 3.2 5534 chr3R 5067992 intergenic not near genes chr3R 5070759 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-239 821 chr3R 5236221 5236239 chr3R 5236348 5236367 5 128 2.5 2.5 2.5 1.4 146 chr3R 5236221 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236294 3` UTR rtp - chr3R 5236367 3` UTR rtp - chr3R_5_5235001 chr3R_5235001 RAL-239 822 chr3R 5250881 5250908 chr3R 5250993 5251017 4 111 2.5 1.0 1.8 1.4 136 chr3R 5250881 intron CG12163 - chr3R 5250949 intron CG12163 - chr3R 5251017 intron CG12163 - chr3R_4_5250001 chr3R_5250001 RAL-239 823 chr3R 5278093 5278121 chr3R 5278170 5278202 7 80 2.5 2.5 2.5 2.0 109 chr3R 5278093 intron mtd - chr3R 5278148 intron mtd - chr3R 5278202 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-239 824 chr3R 5338397 5338429 chr3R 5343574 5343604 Rt1c 5 5177 2.0 7.0 4.5 0.9 5207 chr3R 5338397 intron mtd - chr3R 5341000 intron mtd - chr3R 5343604 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-239 825 chr3R 5712091 5712104 chr3R 5712179 5712192 5 88 1.5 1.0 1.2 2.3 101 chr3R 5712091 3` UTR plx + chr3R 5712142 3` UTR plx + chr3R 5712192 3` UTR plx + chr3R_5_5710001 chr3R_5710001 RAL-239 826 chr3R 5746017 5746046 chr3R 5746258 5746287 pogo 6 241 1.5 4.0 2.8 1.6 270 chr3R 5746017 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-239 827 chr3R 5772376 5772401 chr3R 5772534 5772559 5 158 0.5 1.0 0.8 2.8 183 chr3R 5772376 intron CG2082 - chr3R 5772468 intron CG2082 - chr3R 5772559 intron CG2082 - chr3R_5_5770001 chr3R_5770001 RAL-239 828 chr3R 5809112 5809141 chr3R 5809353 5809382 pogo 6 238 1.5 0.5 1.0 3.0 270 chr3R 5809112 3` UTR CG11000 + chr3R 5809247 3` UTR CG11000 + chr3R 5809382 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-239 829 chr3R 5822385 5822411 chr3R 5823552 5823578 1360 4 1167 0.5 2.5 1.5 1.6 1193 chr3R 5822385 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823578 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-239 830 chr3R 5880804 5880821 chr3R 5881135 5881167 6 344 2.0 5.5 3.8 1.2 363 chr3R 5880804 intron CG34113 - chr3R 5880986 intron CG34113 - chr3R 5881167 intron CG34113 - chr3R_6_5880001 chr3R_5880001 RAL-239 831 chr3R 5896969 5896984 chr3R 5897328 5897340 4 358 5.0 1.0 3.0 1.0 371 chr3R 5896969 intron CG34113 - chr3R 5897154 intron CG34113 - chr3R 5897340 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-239 832 chr3R 5927564 5927588 chr3R 5927804 5927828 pogo 13 239 2.0 2.0 2.0 4.3 264 chr3R 5927564 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_13_5925001 chr3R_5925001 RAL-239 833 chr3R 5935363 5935388 chr3R 5935439 5935464 7 76 0.5 2.0 1.2 3.2 101 chr3R 5935363 intron CG34113 - chr3R 5935414 intron CG34113 - chr3R 5935464 intron CG34113 - chr3R_7_5935001 chr3R_5935001 RAL-239 834 chr3R 6015960 6015991 chr3R 6024441 6024472 Tirant 10 8479 5.0 2.5 3.8 2.1 8512 chr3R 6015960 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024472 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-239 835 chr3R 6158515 6158539 chr3R 6167097 6167120 Tirant 9 8582 2.5 5.0 3.8 1.9 8605 chr3R 6158515 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-239 836 chr3R 6194954 6194978 chr3R 6195034 6195047 6 75 3.5 2.5 3.0 1.5 93 chr3R 6194954 3` UTR NPFR + chr3R 6195000 3` UTR NPFR + chr3R 6195047 3` UTR NPFR + chr3R_6_6195001 chr3R_6195001 RAL-239 837 chr3R 6256469 6256499 chr3R 6256600 6256631 8 132 13.0 11.5 12.2 0.6 162 chr3R 6256469 3` UTR Osi8 + chr3R 6256550 3` UTR Osi8 + chr3R 6256631 intergenic Osi8 + chr3R_8_6255001 chr3R_6255001 RAL-239 838 chr3R 6507613 6507642 chr3R 6507983 6508013 5 371 1.0 1.0 1.0 2.5 400 chr3R 6507613 intergenic not near genes chr3R 6507813 intergenic not near genes chr3R 6508013 intergenic not near genes chr3R_5_6505001 chr3R_6505001 RAL-239 839 chr3R 6510025 6510055 chr3R 6515106 6515135 jockey 4 5080 0.5 1.0 0.8 2.2 5110 chr3R 6510025 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-239 840 chr3R 6560760 6560779 chr3R 6560884 6560909 6 130 1.5 3.5 2.5 1.7 149 chr3R 6560760 intron dpr11 - chr3R 6560834 intron dpr11 - chr3R 6560909 intron dpr11 - chr3R_6_6560001 chr3R_6560001 RAL-239 841 chr3R 6737507 6737531 chr3R 6739285 6739317 Doc 10 1785 3.0 3.5 3.2 2.4 1810 chr3R 6737507 intron pb - chr3R 6738412 intron pb - chr3R 6739317 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-239 842 chr3R 6804200 6804230 chr3R 6804309 6804339 12 106 1.0 1.5 1.2 5.5 139 chr3R 6804200 intergenic not near genes chr3R 6804270 intergenic not near genes chr3R 6804339 intergenic not near genes chr3R_12_6800001 chr3R_6800001 RAL-239 843 chr3R 6918066 6918089 chr3R 6918144 6918167 4 78 0.5 3.0 1.8 1.4 101 chr3R 6918066 intron Antp - chr3R 6918116 intron Antp - chr3R 6918167 intron Antp - chr3R_4_6915001 chr3R_6915001 RAL-239 844 chr3R 7022269 7022290 chr3R 7022560 7022581 6 290 3.0 2.0 2.5 1.7 312 chr3R 7022269 intergenic not near genes chr3R 7022425 intergenic not near genes chr3R 7022581 intergenic not near genes chr3R_6_7020001 chr3R_7020001 RAL-239 845 chr3R 7030702 7030728 chr3R 7030778 7030804 6 76 0.5 1.5 1.0 3.0 102 chr3R 7030702 intergenic not near genes chr3R 7030753 intergenic not near genes chr3R 7030804 intergenic not near genes chr3R_6_7030001 chr3R_7030001 RAL-239 846 chr3R 7408115 7408143 chr3R 7408194 7408214 4 77 1.5 1.5 1.5 1.6 99 chr3R 7408115 intron Ir84a + chr3R 7408164 intron Ir84a + chr3R 7408214 exon Ir84a + chr3R_4_7405001 chr3R_7405001 RAL-239 847 chr3R 7415975 7416010 chr3R 7416121 7416156 12 146 0.5 3.0 1.8 4.3 181 chr3R 7415975 intergenic not near genes chr3R 7416066 intergenic not near genes chr3R 7416156 intergenic not near genes chr3R_12_7415001 chr3R_7415001 RAL-239 848 chr3R 7508911 7508924 chr3R 7508992 7509005 4 81 5.5 2.5 4.0 0.8 94 chr3R 7508911 intergenic alpha-Est8 - chr3R 7508958 intergenic alpha-Est8 - chr3R 7509005 intergenic alpha-Est8 - chr3R_4_7505001 chr3R_7505001 RAL-239 849 chr3R 7729464 7729498 chr3R 7737402 7737434 Stalker2 4 7938 1.0 4.0 2.5 1.1 7970 chr3R 7729464 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-239 850 chr3R 7944050 7944073 chr3R 7944222 7944233 4 163 2.5 2.0 2.2 1.2 183 chr3R 7944050 intron dsx - chr3R 7944142 intron dsx - chr3R 7944233 intron dsx - chr3R_4_7940001 chr3R_7940001 RAL-239 851 chr3R 8101769 8101792 chr3R 8104853 8104876 G2 9 3084 1.0 1.0 1.0 4.5 3107 chr3R 8101769 exon CG7900 + chr3R 8103322 intron CG7900 + chr3R 8104876 3` UTR CG7900 + chr3R_9_8100001 chr3R_8100001 RAL-239 852 chr3R 8207554 8207578 chr3R 8208398 8208422 F-element 7 841 2.0 2.0 2.0 2.3 868 chr3R 8207554 intergenic not near genes chr3R 8207988 intergenic not near genes chr3R 8208422 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-239 853 chr3R 8326545 8326570 chr3R 8326642 8326661 9 95 3.5 7.5 5.5 1.4 116 chr3R 8326545 intron Poxm - chr3R 8326603 intron Poxm - chr3R 8326661 intron Poxm - chr3R_9_8325001 chr3R_8325001 RAL-239 854 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568289 11.0 15.5 13.2 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-239 855 chr3R 8403014 8403041 chr3R 8412180 8412207 roo 9 9165 5.5 3.5 4.5 1.6 9193 chr3R 8403014 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_9_8405001 chr3R_8405001 RAL-239 856 chr3R 8455622 8455649 chr3R 8455702 8455727 6 80 3.5 1.0 2.2 1.9 105 chr3R 8455622 intron CG45263 - chr3R 8455674 intron CG45263 - chr3R 8455727 intron CG45263 - chr3R_6_8455001 chr3R_8455001 RAL-239 857 chr3R 8552366 8552401 chr3R 8552446 8552481 15 78 2.5 2.0 2.2 4.7 115 chr3R 8552366 intergenic Or85d + chr3R 8552424 intergenic Or85d + chr3R 8552481 intergenic Or85d + chr3R_15_8550001 chr3R_8550001 RAL-239 858 chr3R 8570477 8570509 chr3R 8575113 8575145 HMS-Beagle 6 4636 2.0 2.5 2.2 1.9 4668 chr3R 8570477 intergenic not near genes chr3R 8572811 intergenic not near genes chr3R 8575145 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-239 859 chr3R 8614795 8614820 chr3R 8614988 8615021 7 195 0.5 3.0 1.8 2.5 226 chr3R 8614795 intron 5-HT2B + chr3R 8614908 intron 5-HT2B + chr3R 8615021 intron 5-HT2B + chr3R_7_8610001 chr3R_8610001 RAL-239 860 chr3R 8621545 8621551 chr3R 8621622 8621628 4 77 3.5 4.5 4.0 0.8 83 chr3R 8621545 intron 5-HT2B + chr3R 8621586 intron 5-HT2B + chr3R 8621628 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-239 861 chr3R 8707371 8707380 chr3R 8709804 8709820 jockey 4 2438 3.5 3.0 3.2 1.0 2449 chr3R 8707371 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709820 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-239 862 chr3R 8740256 8740273 chr3R 8740344 8740362 4 89 1.5 2.5 2.0 1.3 106 chr3R 8740256 intron CG9801 - chr3R 8740309 intron CG9801 - chr3R 8740362 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-239 863 chr3R 8745763 8745779 chr3R 8745874 8745890 4 111 1.5 1.5 1.5 1.6 127 chr3R 8745763 intron CG9801 - chr3R 8745826 intron CG9801 - chr3R 8745890 intron CG9801 - chr3R_4_8745001 chr3R_8745001 RAL-239 864 chr3R 9030250 9030265 chr3R 9030341 9030354 6 90 5.5 3.0 4.2 1.2 104 chr3R 9030250 intron neur - chr3R 9030302 intron neur - chr3R 9030354 intron neur - chr3R_6_9030001 chr3R_9030001 RAL-239 865 chr3R 9083143 9083175 chr3R 9083228 9083260 7 84 1.0 3.0 2.0 2.3 117 chr3R 9083143 intron pum - chr3R 9083202 intron pum - chr3R 9083260 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-239 866 chr3R 9101837 9101858 chr3R 9101935 9101956 5 98 0.0 2.5 1.2 2.3 119 chr3R 9101837 intron pum - chr3R 9101896 intron pum - chr3R 9101956 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-239 867 chr3R 9185185 9185214 chr3R 9185417 9185439 4 230 1.0 1.0 1.0 2.0 254 chr3R 9185185 intron pum - chr3R 9185312 intron pum - chr3R 9185439 intron pum - chr3R_4_9185001 chr3R_9185001 RAL-239 868 chr3R 9204248 9204275 chr3R 9204335 9204361 6 86 3.5 2.5 3.0 1.5 113 chr3R 9204248 intron pum - chr3R 9204304 intron pum - chr3R 9204361 intron pum - chr3R_6_9200001 chr3R_9200001 RAL-239 869 chr3R 9278776 9278811 chr3R 9284036 9284061 Rt1a 7 5255 0.5 8.0 4.2 1.3 5285 chr3R 9278776 intergenic not near genes chr3R 9281418 intergenic not near genes chr3R 9284061 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-239 870 chr3R 9298231 9298255 chr3R 9298319 9298343 9 87 3.0 1.0 2.0 3.0 112 chr3R 9298231 intron CG8861 - chr3R 9298287 intron CG8861 - chr3R 9298343 intron CG8861 - chr3R_9_9295001 chr3R_9295001 RAL-239 871 chr3R 9382818 9382847 chr3R 9382943 9382972 6 124 0.5 1.5 1.0 3.0 154 chr3R 9382818 intron FER - chr3R 9382895 intron FER - chr3R 9382972 intron FER - chr3R_6_9380001 chr3R_9380001 RAL-239 872 chr3R 9390535 9390564 chr3R 9390619 9390648 5 83 1.0 1.5 1.2 2.3 113 chr3R 9390535 intron FER - chr3R 9390592 intron FER - chr3R 9390648 intron FER - chr3R_5_9390001 chr3R_9390001 RAL-239 873 chr3R 9836323 9836354 chr3R 9836406 9836437 8 82 1.5 1.0 1.2 3.6 114 chr3R 9836323 intron Teh1 - chr3R 9836380 intron Teh1 - chr3R 9836437 intron Teh1 - chr3R_8_9835001 chr3R_9835001 RAL-239 874 chr3R 9898788 9898815 chr3R 9898879 9898907 7 92 4.0 1.5 2.8 1.8 119 chr3R 9898788 intron Glut4EF + chr3R 9898848 intron Glut4EF + chr3R 9898907 intron Glut4EF + chr3R_7_9895001 chr3R_9895001 RAL-239 875 chr3R 10030822 10030832 chr3R 10031130 10031151 8 311 23.0 34.5 28.8 0.3 329 chr3R 10030822 intron Mical - chr3R 10030986 intron Mical - chr3R 10031151 intron Mical - chr3R_8_10030001 chr3R_10030001 RAL-239 876 chr3R 10030821 10030842 chr3R 10031156 10031162 5 320 26.0 22.5 24.2 0.2 341 chr3R 10030821 intron Mical - chr3R 10030992 intron Mical - chr3R 10031162 intron Mical - chr3R_5_10030001 chr3R_10030001 RAL-239 877 chr3R 10275567 10275577 chr3R 10275644 10275654 4 77 0.0 0.5 0.2 3.3 87 chr3R 10275567 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275654 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-239 878 chr3R 10430673 10430701 chr3R 10430762 10430788 7 89 0.5 2.0 1.2 3.2 115 chr3R 10430673 intergenic not near genes chr3R 10430730 intergenic not near genes chr3R 10430788 intergenic not near genes chr3R_7_10430001 chr3R_10430001 RAL-239 879 chr3R 10531870 10531898 chr3R 10531949 10531979 8 81 2.0 1.0 1.5 3.2 109 chr3R 10531870 intron hth - chr3R 10531924 intron hth - chr3R 10531979 intron hth - chr3R_8_10530001 chr3R_10530001 RAL-239 880 chr3R 10730996 10731022 chr3R 10731161 10731188 6 165 2.5 0.0 1.2 2.7 192 chr3R 10730996 intergenic not near genes chr3R 10731092 intergenic not near genes chr3R 10731188 intergenic not near genes chr3R_6_10730001 chr3R_10730001 RAL-239 881 chr3R 10904912 10904935 chr3R 10905115 10905139 6 203 1.0 3.0 2.0 2.0 227 chr3R 10904912 intergenic not near genes chr3R 10905026 intergenic not near genes chr3R 10905139 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-239 882 chr3R 10906840 10906855 chr3R 10906913 10906930 4 75 1.0 3.0 2.0 1.3 90 chr3R 10906840 intergenic not near genes chr3R 10906885 intergenic not near genes chr3R 10906930 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-239 883 chr3R 10957873 10957884 chr3R 10963255 10963272 Rt1c 5 5384 5.5 5.0 5.2 0.8 5399 chr3R 10957873 intergenic not near genes chr3R 10960572 intergenic not near genes chr3R 10963272 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-239 884 chr3R 10971493 10971505 chr3R 10971584 10971589 4 89 5.0 2.5 3.8 0.8 96 chr3R 10971493 intergenic not near genes chr3R 10971541 intergenic not near genes chr3R 10971589 intergenic not near genes chr3R_4_10970001 chr3R_10970001 RAL-239 885 chr3R 11043097 11043116 chr3R 11043203 11043221 7 105 2.0 1.5 1.8 2.5 124 chr3R 11043097 intron CG34114 + chr3R 11043159 intron CG34114 + chr3R 11043221 intron CG34114 + chr3R_7_11040001 chr3R_11040001 RAL-239 886 chr3R 11056898 11056909 chr3R 11056976 11056987 4 78 2.0 0.0 1.0 2.0 89 chr3R 11056898 intergenic not near genes chr3R 11056942 intergenic not near genes chr3R 11056987 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-239 887 chr3R 11087433 11087466 chr3R 11087509 11087542 9 74 2.0 1.5 1.8 3.2 109 chr3R 11087433 intergenic not near genes chr3R 11087488 intergenic not near genes chr3R 11087542 intergenic not near genes chr3R_9_11085001 chr3R_11085001 RAL-239 888 chr3R 11099670 11099686 chr3R 11099802 11099818 4 132 2.0 6.0 4.0 0.8 148 chr3R 11099670 intergenic not near genes chr3R 11099744 intergenic not near genes chr3R 11099818 intergenic not near genes chr3R_4_11095001 chr3R_11095001 RAL-239 889 chr3R 11102323 11102355 chr3R 11102404 11102435 8 80 2.5 2.5 2.5 2.3 112 chr3R 11102323 intergenic not near genes chr3R 11102379 intergenic not near genes chr3R 11102435 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-239 890 chr3R 11151132 11151141 chr3R 11151326 11151326 4 191 2.5 3.0 2.8 1.1 194 chr3R 11151132 3` UTR Ugt86Di - chr3R 11151229 3` UTR Ugt86Di - chr3R 11151326 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-239 891 chr3R 11342541 11342574 chr3R 11342617 11342650 4 76 3.0 0.0 1.5 1.6 109 chr3R 11342541 intron pros + chr3R 11342596 intron pros + chr3R 11342650 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-239 892 chr3R 11518815 11518841 chr3R 11518906 11518932 10 91 1.0 3.5 2.2 3.1 117 chr3R 11518815 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518932 intergenic not near genes chr3R_10_11515001 chr3R_11515001 RAL-239 893 chr3R 11634282 11634300 chr3R 11634367 11634384 7 83 3.5 0.5 2.0 2.3 102 chr3R 11634282 3` UTR Csk - chr3R 11634333 3` UTR Csk - chr3R 11634384 3` UTR Csk - chr3R_7_11630001 chr3R_11630001 RAL-239 894 chr3R 11695747 11695765 chr3R 11695828 11695846 6 80 2.0 3.0 2.5 1.7 99 chr3R 11695747 intergenic not near genes chr3R 11695796 intergenic not near genes chr3R 11695846 intergenic not near genes chr3R_6_11695001 chr3R_11695001 RAL-239 895 chr3R 11710213 11710231 chr3R 11710283 11710309 12 77 6.5 4.0 5.2 1.9 96 chr3R 11710213 intergenic not near genes chr3R 11710261 intergenic not near genes chr3R 11710309 intergenic not near genes chr3R_12_11710001 chr3R_11710001 RAL-239 896 chr3R 11734160 11734186 chr3R 11734279 11734305 8 116 1.5 2.0 1.8 2.9 145 chr3R 11734160 intergenic not near genes chr3R 11734232 intergenic not near genes chr3R 11734305 intergenic not near genes chr3R_8_11730001 chr3R_11730001 RAL-239 897 chr3R 11841060 11841095 chr3R 11846251 11846284 BS 7 5185 4.5 0.5 2.5 2.0 5224 chr3R 11841060 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-239 898 chr3R 11853771 11853798 chr3R 11853876 11853903 4 105 1.0 1.0 1.0 2.0 132 chr3R 11853771 intron CG6959 - chr3R 11853837 intron CG6959 - chr3R 11853903 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-239 899 chr3R 11909365 11909391 chr3R 11909438 11909444 6 68 4.0 3.0 3.5 1.3 79 chr3R 11909365 intron Cad87A - chr3R 11909404 intron Cad87A - chr3R 11909444 intron Cad87A - chr3R_6_11905001 chr3R_11905001 RAL-239 900 chr3R 12022890 12022913 chr3R 12025065 12025090 pogo 5 2173 2.0 4.0 3.0 1.2 2200 chr3R 12022890 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025090 intergenic not near genes chr3R_5_12020001 chr3R_12020001 RAL-239 901 chr3R 12111901 12111917 chr3R 12111975 12111993 6 74 0.0 1.5 0.8 3.3 92 chr3R 12111901 intergenic dpr17 + chr3R 12111947 intergenic not near genes chr3R 12111993 intergenic not near genes chr3R_6_12110001 chr3R_12110001 RAL-239 902 chr3R 12154031 12154050 chr3R 12154460 12154476 4 427 5.5 20.0 12.8 0.3 445 chr3R 12154031 intron dpr15 - chr3R 12154254 intron dpr15 - chr3R 12154476 intron dpr15 - chr3R_4_12150001 chr3R_12150001 RAL-239 903 chr3R 12183177 12183206 chr3R 12183263 12183292 6 86 1.0 1.5 1.2 2.7 115 chr3R 12183177 intergenic not near genes chr3R 12183234 intergenic not near genes chr3R 12183292 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-239 904 chr3R 12582741 12582756 chr3R 12582807 12582840 6 76 1.5 1.5 1.5 2.4 99 chr3R 12582741 intron Octbeta2R - chr3R 12582790 intron Octbeta2R - chr3R 12582840 intron Octbeta2R - chr3R_6_12580001 chr3R_12580001 RAL-239 905 chr3R 12666774 12666795 chr3R 12666901 12666921 4 127 3.5 3.0 3.2 1.0 147 chr3R 12666774 intron CG14395 + chr3R 12666848 intron CG14395 + chr3R 12666921 intron CG14395 + chr3R_4_12665001 chr3R_12665001 RAL-239 906 chr3R 12733477 12733502 chr3R 12733554 12733579 10 76 3.5 2.0 2.8 2.6 102 chr3R 12733477 intergenic not near genes chr3R 12733528 intergenic not near genes chr3R 12733579 intergenic not near genes chr3R_10_12730001 chr3R_12730001 RAL-239 907 chr3R 12758128 12758155 chr3R 12758209 12758236 4 81 0.5 2.0 1.2 1.8 108 chr3R 12758128 intron beat-Vc - chr3R 12758182 intron beat-Vc - chr3R 12758236 intron beat-Vc - chr3R_4_12755001 chr3R_12755001 RAL-239 908 chr3R 12763122 12763149 chr3R 12763199 12763223 4 76 0.0 0.0 0.0 4.0 101 chr3R 12763122 intron beat-Vc - chr3R 12763172 intron beat-Vc - chr3R 12763223 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-239 909 chr3R 12920155 12920186 chr3R 12925357 12925389 copia 5 5202 3.5 3.0 3.2 1.2 5234 chr3R 12920155 intron beat-Vb + chr3R 12922772 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-239 910 chr3R 13059961 13059972 chr3R 13060156 13060166 5 195 1.5 0.0 0.8 2.8 205 chr3R 13059961 intron sim + chr3R 13060064 intron sim + chr3R 13060166 intron sim + chr3R_5_13060001 chr3R_13060001 RAL-239 911 chr3R 13138322 13138351 chr3R 13138409 13138431 11 84 0.0 1.5 0.8 6.1 109 chr3R 13138322 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138376 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138431 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_11_13135001 chr3R_13135001 RAL-239 912 chr3R 13143040 13143063 chr3R 13148616 13148639 mdg3 10 5573 2.5 4.0 3.2 2.4 5599 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148639 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13145001 chr3R_13145001 RAL-239 913 chr3R 13164536 13164547 chr3R 13165617 13165627 4 1080 16.0 7.0 11.5 0.3 1091 chr3R 13164536 intergenic not near genes chr3R 13165082 intergenic not near genes chr3R 13165627 intergenic not near genes chr3R_4_13165001 chr3R_13165001 RAL-239 914 chr3R 13163296 13163323 chr3R 13165909 13165936 6 2613 34.5 13.5 24.0 0.2 2640 chr3R 13163296 exon timeout + chr3R 13164616 intergenic not near genes chr3R 13165936 intergenic not near genes chr3R_6_13160001 chr3R_13160001 RAL-239 915 chr3R 13171909 13171919 chr3R 13172819 13172829 4 910 18.5 3.5 11.0 0.3 920 chr3R 13171909 intergenic not near genes chr3R 13172369 intergenic not near genes chr3R 13172829 intergenic not near genes chr3R_4_13170001 chr3R_13170001 RAL-239 916 chr3R 13171907 13171936 chr3R 13172832 13172847 5 914 21.0 3.5 12.2 0.4 940 chr3R 13171907 intergenic not near genes chr3R 13172377 intergenic not near genes chr3R 13172847 intergenic not near genes chr3R_5_13170001 chr3R_13170001 RAL-239 917 chr3R 13173445 13173474 chr3R 13173526 13173554 9 81 3.5 1.5 2.5 2.6 109 chr3R 13173445 intergenic not near genes chr3R 13173500 intergenic not near genes chr3R 13173554 intergenic not near genes chr3R_9_13170001 chr3R_13170001 RAL-239 918 chr3R 13195954 13195973 chr3R 13196049 13196068 10 95 4.5 0.5 2.5 2.9 114 chr3R 13195954 intergenic not near genes chr3R 13196011 intergenic not near genes chr3R 13196068 intergenic not near genes chr3R_10_13195001 chr3R_13195001 RAL-239 919 chr3R 13199274 13199300 chr3R 13199357 13199383 11 83 2.5 0.5 1.5 4.4 109 chr3R 13199274 intergenic not near genes chr3R 13199328 intergenic not near genes chr3R 13199383 intergenic not near genes chr3R_11_13195001 chr3R_13195001 RAL-239 920 chr3R 13303925 13303945 chr3R 13304002 13304028 4 81 2.0 5.0 3.5 0.9 103 chr3R 13303925 intron CG32473 + chr3R 13303976 intron CG32473 + chr3R 13304028 intron CG32473 + chr3R_4_13300001 chr3R_13300001 RAL-239 921 chr3R 13339063 13339091 chr3R 13339142 13339158 4 76 1.0 2.0 1.5 1.6 95 chr3R 13339063 intron PK2-R1 + chr3R 13339110 intron PK2-R1 + chr3R 13339158 intron PK2-R1 + chr3R_4_13335001 chr3R_13335001 RAL-239 922 chr3R 13570980 13570993 chr3R 13571273 13571290 6 295 3.0 3.0 3.0 1.5 310 chr3R 13570980 intergenic not near genes chr3R 13571135 intergenic not near genes chr3R 13571290 intergenic not near genes chr3R_6_13570001 chr3R_13570001 RAL-239 923 chr3R 13599774 13599799 chr3R 13599956 13599981 9 182 4.0 5.5 4.8 1.6 207 chr3R 13599774 intergenic not near genes chr3R 13599878 intergenic not near genes chr3R 13599981 intergenic not near genes chr3R_9_13595001 chr3R_13595001 RAL-239 924 chr3R 13603055 13603076 chr3R 13603146 13603167 4 91 2.5 2.5 2.5 1.1 112 chr3R 13603055 intergenic not near genes chr3R 13603111 intergenic not near genes chr3R 13603167 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-239 925 chr3R 13693028 13693028 chr3R 21907534 21907535 4 8214507 6.5 15.5 11.0 0.3 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-239 926 chr3R 13765262 13765285 chr3R 13765346 13765369 5 83 0.0 2.0 1.0 2.5 107 chr3R 13765262 intergenic CG9312 + chr3R 13765316 intergenic CG9312 + chr3R 13765369 intergenic CG9312 + chr3R_5_13765001 chr3R_13765001 RAL-239 927 chr3R 13887425 13887446 chr3R 13887558 13887579 5 133 2.0 0.0 1.0 2.5 154 chr3R 13887425 intergenic not near genes chr3R 13887502 intergenic not near genes chr3R 13887579 intergenic not near genes chr3R_5_13885001 chr3R_13885001 RAL-239 928 chr3R 13975375 13975402 chr3R 13975455 13975482 5 80 3.0 1.0 2.0 1.7 107 chr3R 13975375 intron rdx - chr3R 13975428 intron rdx - chr3R 13975482 intron rdx - chr3R_5_13975001 chr3R_13975001 RAL-239 929 chr3R 14194429 14194461 chr3R 14203578 14203610 roo 6 9145 3.5 2.5 3.0 1.5 9181 chr3R 14194429 intron Dop1R1 - chr3R 14199020 intron Dop1R1 - chr3R 14203610 intron Dop1R1 - chr3R_6_14195001 chr3R_14195001 RAL-239 930 chr3R 14364063 14364087 chr3R 14364139 14364147 7 73 5.0 2.5 3.8 1.5 84 chr3R 14364063 intron NK7.1 - chr3R 14364105 intron NK7.1 - chr3R 14364147 intron NK7.1 - chr3R_7_14360001 chr3R_14360001 RAL-239 931 chr3R 14497196 14497223 chr3R 14497300 14497329 9 103 4.0 2.5 3.2 2.1 133 chr3R 14497196 intron CR44177 + chr3R 14497262 intron CR44177 + chr3R 14497329 intron CR44177 + chr3R_9_14495001 chr3R_14495001 RAL-239 932 chr3R 14514484 14514510 chr3R 14514569 14514595 7 84 2.0 0.5 1.2 3.2 111 chr3R 14514484 3` UTR Pde6 - chr3R 14514540 3` UTR Pde6 - chr3R 14514595 3` UTR Pde6 - chr3R_7_14510001 chr3R_14510001 RAL-239 933 chr3R 14577960 14577974 chr3R 14578076 14578090 4 116 2.0 2.5 2.2 1.2 130 chr3R 14577960 intron stumps + chr3R 14578025 intron stumps + chr3R 14578090 intron stumps + chr3R_4_14575001 chr3R_14575001 RAL-239 934 chr3R 14833477 14833513 chr3R 14834283 14834319 14 801 1.5 2.0 1.8 5.0 842 chr3R 14833477 intron btsz - chr3R 14833898 intron btsz - chr3R 14834319 intron btsz - chr3R_14_14830001 chr3R_14830001 RAL-239 935 chr3R 14923728 14923732 chr3R 14923805 14923809 4 77 4.0 3.0 3.5 0.9 81 chr3R 14923728 3` UTR CR45598 - chr3R 14923768 intergenic CR45598 - chr3R 14923809 intergenic CR45598 - chr3R_4_14920001 chr3R_14920001 RAL-239 936 chr3R 14923735 14923747 chr3R 14923797 14923823 5 74 2.5 2.5 2.5 1.4 88 chr3R 14923735 3` UTR CR45598 - chr3R 14923779 intergenic CR45598 - chr3R 14923823 intergenic CR45598 - chr3R_5_14920001 chr3R_14920001 RAL-239 937 chr3R 14978185 14978219 chr3R 14978313 14978345 11 125 3.5 5.5 4.5 2.0 160 chr3R 14978185 intergenic not near genes chr3R 14978265 intergenic not near genes chr3R 14978345 intergenic not near genes chr3R_11_14975001 chr3R_14975001 RAL-239 938 chr3R 15132061 15132081 chr3R 15135121 15135141 Juan 10 3060 5.5 10.5 8.0 1.1 3080 chr3R 15132061 intergenic CG42788 - chr3R 15133601 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_10_15130001 chr3R_15130001 RAL-239 939 chr3R 15130866 15130880 chr3R 15141229 15141241 5 10362 18.5 23.5 21.0 0.2 10375 chr3R 15130866 intron CG42788 - chr3R 15136054 exon CG6912 - chr3R 15141241 exon CG3987 + chr3R_5_15135001 chr3R_15135001 RAL-239 940 chr3R 15278824 15278845 chr3R 15278911 15278932 8 87 1.0 2.0 1.5 3.2 108 chr3R 15278824 intergenic l(3)neo43 - chr3R 15278878 intergenic l(3)neo43 - chr3R 15278932 intergenic l(3)neo43 - chr3R_8_15275001 chr3R_15275001 RAL-239 941 chr3R 15416247 15416267 chr3R 15416326 15416347 7 79 2.5 0.5 1.5 2.8 100 chr3R 15416247 3` UTR Atx2 + chr3R 15416297 3` UTR Atx2 + chr3R 15416347 3` UTR Atx2 + chr3R_7_15415001 chr3R_15415001 RAL-239 942 chr3R 15521960 15521990 chr3R 15522051 15522081 6 90 0.5 2.5 1.5 2.4 121 chr3R 15521960 intergenic not near genes chr3R 15522020 intergenic not near genes chr3R 15522081 intergenic not near genes chr3R_6_15520001 chr3R_15520001 RAL-239 943 chr3R 15594656 15594672 chr3R 15594739 15594755 4 83 0.0 1.5 0.8 2.2 99 chr3R 15594656 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594755 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-239 944 chr3R 15601174 15601194 chr3R 15608691 15608710 412 5 7519 2.0 3.0 2.5 1.4 7536 chr3R 15601174 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608710 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-239 945 chr3R 15765143 15765162 chr3R 15765308 15765327 5 165 2.0 1.5 1.8 1.8 184 chr3R 15765143 intergenic not near genes chr3R 15765235 intergenic not near genes chr3R 15765327 intergenic not near genes chr3R_5_15765001 chr3R_15765001 RAL-239 946 chr3R 15783733 15783763 chr3R 15784013 15784040 12 280 1.5 4.5 3.0 3.0 307 chr3R 15783733 intergenic not near genes chr3R 15783886 intergenic not near genes chr3R 15784040 intergenic not near genes chr3R_12_15780001 chr3R_15780001 RAL-239 947 chr3R 15872605 15872631 chr3R 15872893 15872893 9 283 2.0 2.5 2.2 2.8 288 chr3R 15872605 intron CG31183 - chr3R 15872749 intron CG31183 - chr3R 15872893 intron CG31183 - chr3R_9_15870001 chr3R_15870001 RAL-239 948 chr3R 15948653 15948680 chr3R 15948740 15948766 4 83 3.5 2.5 3.0 1.0 113 chr3R 15948653 intron Sap47 + chr3R 15948710 intron Sap47 + chr3R 15948766 intron Sap47 + chr3R_4_15945001 chr3R_15945001 RAL-239 949 chr3R 16241792 16241811 chr3R 16242054 16242074 5 263 1.5 0.5 1.0 2.5 282 chr3R 16241792 intron tara + chr3R 16241933 intron tara + chr3R 16242074 intron tara + chr3R_5_16240001 chr3R_16240001 RAL-239 950 chr3R 16246526 16246555 chr3R 16246598 16246631 5 75 0.0 2.0 1.0 2.5 105 chr3R 16246526 intron tara + chr3R 16246578 intron tara + chr3R 16246631 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-239 951 chr3R 16472583 16472594 chr3R 16472659 16472670 4 75 8.0 9.5 8.8 0.4 87 chr3R 16472583 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472670 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-239 952 chr3R 16520717 16520747 chr3R 16520799 16520825 9 81 2.0 1.0 1.5 3.6 108 chr3R 16520717 intron CG42342 + chr3R 16520771 intron CG42342 + chr3R 16520825 intron CG42342 + chr3R_9_16520001 chr3R_16520001 RAL-239 953 chr3R 16756317 16756352 chr3R 16762508 16762542 diver 10 6189 3.0 1.5 2.2 3.1 6225 chr3R 16756317 intron bxd - chr3R 16759430 intron bxd - chr3R 16762542 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-239 954 chr3R 16782030 16782048 chr3R 16782095 16782103 5 70 2.0 3.0 2.5 1.4 73 chr3R 16782030 intergenic not near genes chr3R 16782066 intergenic not near genes chr3R 16782103 intergenic not near genes chr3R_5_16780001 chr3R_16780001 RAL-239 955 chr3R 16795307 16795322 chr3R 16795379 16795412 4 86 1.5 1.0 1.2 1.8 105 chr3R 16795307 intergenic not near genes chr3R 16795360 intergenic not near genes chr3R 16795412 intergenic not near genes chr3R_4_16795001 chr3R_16795001 RAL-239 956 chr3R 16816318 16816342 chr3R 16816490 16816514 4 172 4.5 2.5 3.5 0.9 196 chr3R 16816318 intron abd-A - chr3R 16816416 intron abd-A - chr3R 16816514 intron abd-A - chr3R_4_16815001 chr3R_16815001 RAL-239 957 chr3R 16836966 16836981 chr3R 16837295 16837310 5 329 1.0 2.0 1.5 2.0 344 chr3R 16836966 intron iab-8 - chr3R 16837138 intron iab-8 - chr3R 16837310 intron iab-8 - chr3R_5_16835001 chr3R_16835001 RAL-239 958 chr3R 17059622 17059644 chr3R 17059702 17059724 5 79 3.5 3.0 3.2 1.2 102 chr3R 17059622 intron Dad + chr3R 17059673 intron Dad + chr3R 17059724 intron Dad + chr3R_5_17055001 chr3R_17055001 RAL-239 959 chr3R 17250242 17250267 chr3R 17250381 17250406 6 139 0.5 1.0 0.8 3.3 164 chr3R 17250242 intron beat-IIb - chr3R 17250324 intron beat-IIb - chr3R 17250406 intron beat-IIb - chr3R_6_17250001 chr3R_17250001 RAL-239 960 chr3R 17271451 17271481 chr3R 17272345 17272373 7 894 0.5 2.0 1.2 3.2 922 chr3R 17271451 intergenic CR44258 - chr3R 17271912 intergenic not near genes chr3R 17272373 intergenic not near genes chr3R_7_17270001 chr3R_17270001 RAL-239 961 chr3R 17335162 17335186 chr3R 17335238 17335262 6 76 2.0 1.5 1.8 2.1 100 chr3R 17335162 intron beat-IIa - chr3R 17335212 intron beat-IIa - chr3R 17335262 intron beat-IIa - chr3R_6_17335001 chr3R_17335001 RAL-239 962 chr3R 17346698 17346715 chr3R 17348261 17348278 F-element 5 1561 0.5 5.5 3.0 1.2 1580 chr3R 17346698 intron beat-IIa - chr3R 17347488 intron beat-IIa - chr3R 17348278 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-239 963 chr3R 17461213 17461222 chr3R 17461295 17461304 5 82 1.5 1.5 1.5 2.0 91 chr3R 17461213 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461304 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-239 964 chr3R 17531907 17531914 chr3R 17531976 17531991 7 76 1.0 6.5 3.8 1.5 84 chr3R 17531907 intergenic CG5823 - chr3R 17531949 intergenic CG5823 - chr3R 17531991 intergenic CG5823 - chr3R_7_17530001 chr3R_17530001 RAL-239 965 chr3R 17569980 17569988 chr3R 17570035 17570075 6 70 0.5 2.5 1.5 2.4 95 chr3R 17569980 intergenic not near genes chr3R 17570028 intergenic not near genes chr3R 17570075 intergenic not near genes chr3R_6_17570001 chr3R_17570001 RAL-239 966 chr3R 17571577 17571597 chr3R 17571658 17571677 6 81 1.5 1.0 1.2 2.7 100 chr3R 17571577 intergenic not near genes chr3R 17571627 intergenic not near genes chr3R 17571677 intergenic not near genes chr3R_6_17570001 chr3R_17570001 RAL-239 967 chr3R 17814765 17814797 chr3R 17814850 17814881 7 85 1.5 2.0 1.8 2.5 116 chr3R 17814765 intron tinc + chr3R 17814823 intron tinc + chr3R 17814881 intron tinc + chr3R_7_17810001 chr3R_17810001 RAL-239 968 chr3R 17845210 17845220 chr3R 17845268 17845295 7 62 1.5 3.0 2.2 2.2 85 chr3R 17845210 intron tinc + chr3R 17845252 intron tinc + chr3R 17845295 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-239 969 chr3R 17859387 17859415 chr3R 17859462 17859491 10 72 3.5 6.0 4.8 1.7 104 chr3R 17859387 intron tinc + chr3R 17859439 intron tinc + chr3R 17859491 intron tinc + chr3R_10_17855001 chr3R_17855001 RAL-239 970 chr3R 17925853 17925881 chr3R 17927318 17927348 hobo 10 1464 5.0 5.0 5.0 1.7 1495 chr3R 17925853 intron cpo + chr3R 17926600 intron cpo + chr3R 17927348 intron cpo + chr3R_10_17925001 chr3R_17925001 RAL-239 971 chr3R 17960699 17960716 chr3R 17960884 17960901 6 184 0.5 1.5 1.0 3.0 202 chr3R 17960699 intron cpo + chr3R 17960800 intron cpo + chr3R 17960901 intron cpo + chr3R_6_17960001 chr3R_17960001 RAL-239 972 chr3R 18303702 18303714 chr3R 18303773 18303791 8 74 2.5 5.0 3.8 1.7 89 chr3R 18303702 3` UTR PKD - chr3R 18303746 3` UTR PKD - chr3R 18303791 3` UTR PKD - chr3R_8_18300001 chr3R_18300001 RAL-239 973 chr3R 18303715 18303716 chr3R 18303768 18303791 4 65 2.5 4.5 3.5 0.9 76 chr3R 18303715 3` UTR PKD - chr3R 18303753 3` UTR PKD - chr3R 18303791 3` UTR PKD - chr3R_4_18300001 chr3R_18300001 RAL-239 974 chr3R 18528377 18528398 chr3R 18528464 18528484 4 87 1.5 2.0 1.8 1.4 107 chr3R 18528377 intron fru - chr3R 18528430 intron fru - chr3R 18528484 intron fru - chr3R_4_18525001 chr3R_18525001 RAL-239 975 chr3R 18622780 18622812 chr3R 18622855 18622862 7 69 0.5 1.0 0.8 3.9 82 chr3R 18622780 intron qin + chr3R 18622821 intron qin + chr3R 18622862 intron qin + chr3R_7_18620001 chr3R_18620001 RAL-239 976 chr3R 18660833 18660849 chr3R 18662895 18662909 5 2062 31.5 32.5 32.0 0.2 2076 chr3R 18660833 exon CstF-64 + chr3R 18661871 exon Cpsf73 - chr3R 18662909 exon Cpsf73 - chr3R_5_18660001 chr3R_18660001 RAL-239 977 chr3R 18697517 18697548 chr3R 18697682 18697713 4 165 0.0 0.5 0.2 3.3 196 chr3R 18697517 intergenic not near genes chr3R 18697615 intergenic not near genes chr3R 18697713 intergenic not near genes chr3R_4_18695001 chr3R_18695001 RAL-239 978 chr3R 18730025 18730033 chr3R 18730101 18730108 8 75 2.5 5.0 3.8 1.7 83 chr3R 18730025 intron Cha + chr3R 18730066 intron Cha + chr3R 18730108 intron Cha + chr3R_8_18730001 chr3R_18730001 RAL-239 979 chr3R 18812078 18812108 chr3R 18812156 18812186 6 78 5.5 4.0 4.8 1.0 108 chr3R 18812078 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-239 980 chr3R 18860133 18860160 chr3R 18860219 18860238 8 85 2.5 2.0 2.2 2.5 105 chr3R 18860133 intergenic not near genes chr3R 18860186 intergenic not near genes chr3R 18860238 intergenic not near genes chr3R_8_18860001 chr3R_18860001 RAL-239 981 chr3R 18868611 18868627 chr3R 18868692 18868702 6 78 7.0 10.5 8.8 0.6 91 chr3R 18868611 intergenic not near genes chr3R 18868656 intergenic not near genes chr3R 18868702 intergenic not near genes chr3R_6_18865001 chr3R_18865001 RAL-239 982 chr3R 18965201 18965236 chr3R 18965394 18965428 9 189 2.5 0.5 1.5 3.6 227 chr3R 18965201 intron,intron CG42613 +,CG43732 + chr3R 18965314 intron,intron CG42613 +,CG43732 + chr3R 18965428 intron,intron CG42613 +,CG43732 + chr3R_9_18965001 chr3R_18965001 RAL-239 983 chr3R 19014088 19014118 chr3R 19014168 19014198 5 80 2.5 6.0 4.2 1.0 110 chr3R 19014088 intron gukh + chr3R 19014143 intron gukh + chr3R 19014198 intron gukh + chr3R_5_19010001 chr3R_19010001 RAL-239 984 chr3R 19140262 19140300 chr3R 19140710 19140748 14 447 2.5 3.5 3.0 3.5 486 chr3R 19140262 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140748 3` UTR Ppcs - chr3R_14_19140001 chr3R_19140001 RAL-239 985 chr3R 19290551 19290574 chr3R 19290627 19290650 8 75 1.5 1.0 1.2 3.6 99 chr3R 19290551 intergenic not near genes chr3R 19290600 intergenic not near genes chr3R 19290650 intergenic not near genes chr3R_8_19290001 chr3R_19290001 RAL-239 986 chr3R 19435519 19435541 chr3R 19435794 19435817 9 274 3.5 5.0 4.2 1.7 298 chr3R 19435519 intron CG31221 + chr3R 19435668 intron CG31221 + chr3R 19435817 intron CG31221 + chr3R_9_19435001 chr3R_19435001 RAL-239 987 chr3R 19453854 19453870 chr3R 19454004 19454017 4 149 3.5 0.5 2.0 1.3 163 chr3R 19453854 intron CG31221 + chr3R 19453936 intron CG31221 + chr3R 19454017 intron CG31221 + chr3R_4_19450001 chr3R_19450001 RAL-239 988 chr3R 19502197 19502225 chr3R 19502274 19502302 6 77 1.0 0.5 0.8 3.3 105 chr3R 19502197 intron Dys + chr3R 19502250 intron Dys + chr3R 19502302 intron Dys + chr3R_6_19500001 chr3R_19500001 RAL-239 989 chr3R 19532214 19532249 chr3R 19532288 19532325 8 74 2.0 3.0 2.5 2.3 111 chr3R 19532214 intron Dys + chr3R 19532270 intron Dys + chr3R 19532325 intron Dys + chr3R_8_19530001 chr3R_19530001 RAL-239 990 chr3R 19550067 19550099 chr3R 19550176 19550208 4 109 3.5 2.0 2.8 1.1 141 chr3R 19550067 intron Dys + chr3R 19550138 intron Dys + chr3R 19550208 intron Dys + chr3R_4_19550001 chr3R_19550001 RAL-239 991 chr3R 19602757 19602787 chr3R 19602835 19602865 4 78 1.0 0.5 0.8 2.2 108 chr3R 19602757 intergenic CG7333 + chr3R 19602811 intergenic CG7333 + chr3R 19602865 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-239 992 chr3R 19702322 19702353 chr3R 19702404 19702435 6 78 1.0 1.5 1.2 2.7 113 chr3R 19702322 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702435 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-239 993 chr3R 19716226 19716247 chr3R 19716303 19716324 4 77 0.0 0.0 0.0 4.0 98 chr3R 19716226 intergenic CG34286 - chr3R 19716275 intergenic CG34286 - chr3R 19716324 intergenic CG34286 - chr3R_4_19715001 chr3R_19715001 RAL-239 994 chr3R 19908274 19908304 chr3R 19908355 19908388 4 81 0.0 1.0 0.5 2.7 114 chr3R 19908274 intron RhoGAP92B + chr3R 19908331 intron RhoGAP92B + chr3R 19908388 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-239 995 chr3R 19943879 19943901 chr3R 19943959 19943978 6 80 3.5 0.0 1.8 2.1 99 chr3R 19943879 intron Hs6st - chr3R 19943928 intron Hs6st - chr3R 19943978 intron Hs6st - chr3R_6_19940001 chr3R_19940001 RAL-239 996 chr3R 19950037 19950063 chr3R 19950115 19950141 10 78 0.5 1.0 0.8 5.6 104 chr3R 19950037 intron Hs6st - chr3R 19950089 intron Hs6st - chr3R 19950141 intron Hs6st - chr3R_10_19950001 chr3R_19950001 RAL-239 997 chr3R 20008823 20008856 chr3R 20008904 20008936 7 80 0.0 3.0 1.5 2.8 113 chr3R 20008823 intergenic MED25 +,Hs6st - chr3R 20008880 intergenic MED25 +,Hs6st - chr3R 20008936 intergenic MED25 +,Hs6st - chr3R_7_20005001 chr3R_20005001 RAL-239 998 chr3R 20060632 20060649 chr3R 20060714 20060732 5 83 3.5 2.0 2.8 1.3 100 chr3R 20060632 intergenic not near genes chr3R 20060682 intergenic not near genes chr3R 20060732 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-239 999 chr3R 20124568 20124595 chr3R 20124655 20124681 5 86 0.5 0.5 0.5 3.3 113 chr3R 20124568 intergenic not near genes chr3R 20124624 intergenic not near genes chr3R 20124681 intergenic not near genes chr3R_5_20120001 chr3R_20120001 RAL-239 1000 chr3R 20137194 20137224 chr3R 20137321 20137351 5 127 3.5 0.0 1.8 1.8 157 chr3R 20137194 intergenic not near genes chr3R 20137272 intergenic not near genes chr3R 20137351 intergenic not near genes chr3R_5_20135001 chr3R_20135001 RAL-239 1001 chr3R 20149599 20149624 chr3R 20151720 20151744 4 2120 9.5 23.5 16.5 0.2 2145 chr3R 20149599 intergenic not near genes chr3R 20150672 intergenic not near genes chr3R 20151744 intergenic not near genes chr3R_4_20150001 chr3R_20150001 RAL-239 1002 chr3R 20195688 20195723 chr3R 20195765 20195799 5 76 0.0 1.5 0.8 2.8 111 chr3R 20195688 intergenic not near genes chr3R 20195744 intergenic not near genes chr3R 20195799 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-239 1003 chr3R 20266521 20266526 chr3R 20272992 20272997 Burdock 5 6471 3.5 0.0 1.8 1.8 6476 chr3R 20266521 intron cic + chr3R 20269759 intron cic + chr3R 20272997 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-239 1004 chr3R 20411221 20411239 chr3R 20411436 20411448 7 214 3.0 3.0 3.0 1.8 227 chr3R 20411221 intron Gfrl - chr3R 20411334 intron Gfrl - chr3R 20411448 intron Gfrl - chr3R_7_20410001 chr3R_20410001 RAL-239 1005 chr3R 20433107 20433128 chr3R 20433197 20433218 4 90 1.5 1.0 1.2 1.8 111 chr3R 20433107 intron Gfrl - chr3R 20433162 intron Gfrl - chr3R 20433218 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-239 1006 chr3R 20499869 20499889 chr3R 20499959 20499979 5 90 1.5 2.0 1.8 1.8 110 chr3R 20499869 intergenic Dic2 - chr3R 20499924 intergenic Dic2 - chr3R 20499979 intergenic Dic2 - chr3R_5_20495001 chr3R_20495001 RAL-239 1007 chr3R 20595609 20595632 chr3R 20595819 20595841 6 209 1.0 1.5 1.2 2.7 232 chr3R 20595609 intron bon + chr3R 20595725 intron bon + chr3R 20595841 intron bon + chr3R_6_20595001 chr3R_20595001 RAL-239 1008 chr3R 20686964 20686989 chr3R 20687398 20687424 6 433 1.0 1.5 1.2 2.7 460 chr3R 20686964 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687424 intergenic not near genes chr3R_6_20685001 chr3R_20685001 RAL-239 1009 chr3R 20703487 20703513 chr3R 20703881 20703905 4 394 0.0 0.5 0.2 3.3 418 chr3R 20703487 intron Oamb - chr3R 20703696 intron Oamb - chr3R 20703905 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-239 1010 chr3R 20707748 20707773 chr3R 20707963 20707988 5 213 1.5 2.0 1.8 1.8 240 chr3R 20707748 intron Oamb - chr3R 20707868 intron Oamb - chr3R 20707988 intron Oamb - chr3R_5_20705001 chr3R_20705001 RAL-239 1011 chr3R 20722851 20722885 chr3R 20722978 20722995 5 122 2.0 1.5 1.8 1.8 144 chr3R 20722851 intergenic not near genes chr3R 20722923 intergenic not near genes chr3R 20722995 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-239 1012 chr3R 20724517 20724527 chr3R 20724586 20724616 4 84 3.0 4.5 3.8 0.8 99 chr3R 20724517 intergenic not near genes chr3R 20724566 intergenic not near genes chr3R 20724616 intergenic not near genes chr3R_4_20720001 chr3R_20720001 RAL-239 1013 chr3R 20735032 20735042 chr3R 20735101 20735108 6 72 3.5 4.0 3.8 1.2 76 chr3R 20735032 intergenic not near genes chr3R 20735070 intergenic not near genes chr3R 20735108 intergenic not near genes chr3R_6_20735001 chr3R_20735001 RAL-239 1014 chr3R 20787439 20787457 chr3R 20787530 20787548 4 91 2.5 1.0 1.8 1.4 109 chr3R 20787439 intron Syp + chr3R 20787494 intron Syp + chr3R 20787548 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-239 1015 chr3R 20901343 20901368 chr3R 20901429 20901449 8 85 1.5 3.0 2.2 2.5 106 chr3R 20901343 intergenic not near genes chr3R 20901396 intergenic not near genes chr3R 20901449 intergenic not near genes chr3R_8_20900001 chr3R_20900001 RAL-239 1016 chr3R 20966133 20966149 chr3R 20966216 20966232 4 83 0.0 1.5 0.8 2.2 99 chr3R 20966133 intron Atpalpha + chr3R 20966182 intron Atpalpha + chr3R 20966232 intron Atpalpha + chr3R_4_20965001 chr3R_20965001 RAL-239 1017 chr3R 21014010 21014044 chr3R 21014088 21014122 9 78 0.5 0.5 0.5 6.0 112 chr3R 21014010 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014122 3` UTR Calx + chr3R_9_21010001 chr3R_21010001 RAL-239 1018 chr3R 21239811 21239952 chr3R 21239905 21240028 4 80 0.0 0.0 0.0 4.0 217 chr3R 21239811 intergenic not near genes chr3R 21239920 intergenic not near genes chr3R 21240028 intergenic not near genes chr3R_4_21235001 chr3R_21235001 RAL-239 1019 chr3R 21330806 21330821 chr3R 21330889 21330911 5 88 1.5 2.5 2.0 1.7 105 chr3R 21330806 intron CG16791 - chr3R 21330858 intron CG16791 - chr3R 21330911 intron CG16791 - chr3R_5_21330001 chr3R_21330001 RAL-239 1020 chr3R 21472012 21472036 chr3R 21472093 21472116 4 81 1.0 3.5 2.2 1.2 104 chr3R 21472012 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-239 1021 chr3R 21494678 21494714 chr3R 21494758 21494794 7 80 4.0 2.5 3.2 1.7 116 chr3R 21494678 intergenic not near genes chr3R 21494736 intergenic not near genes chr3R 21494794 intergenic not near genes chr3R_7_21490001 chr3R_21490001 RAL-239 1022 chr3R 21505222 21505252 chr3R 21505304 21505334 7 82 2.0 2.5 2.2 2.2 112 chr3R 21505222 intron C15 + chr3R 21505278 intron C15 + chr3R 21505334 intron C15 + chr3R_7_21505001 chr3R_21505001 RAL-239 1023 chr3R 21518252 21518269 chr3R 21518335 21518353 4 84 0.0 2.5 1.2 1.8 101 chr3R 21518252 intergenic not near genes chr3R 21518302 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-239 1024 chr3R 21613445 21613476 chr3R 21613526 21613557 8 81 3.5 4.5 4.0 1.6 112 chr3R 21613445 intron InR - chr3R 21613501 intron InR - chr3R 21613557 intron InR - chr3R_8_21610001 chr3R_21610001 RAL-239 1025 chr3R 21641254 21641289 chr3R 21641330 21641364 7 73 2.5 1.5 2.0 2.3 110 chr3R 21641254 intron E2f - chr3R 21641309 intron E2f - chr3R 21641364 intron E2f - chr3R_7_21640001 chr3R_21640001 RAL-239 1026 chr3R 21761140 21761155 chr3R 21768509 21768530 mdg1 10 7383 2.5 5.0 3.8 2.1 7390 chr3R 21761140 exon CG42335 + chr3R 21764835 intron CG42335 + chr3R 21768530 exon CG42335 + chr3R_10_21760001 chr3R_21760001 RAL-239 1027 chr3R 21790974 21790980 chr3R 21791045 21791065 4 82 1.0 1.5 1.2 1.8 91 chr3R 21790974 intron CASK - chr3R 21791020 intron CASK - chr3R 21791065 intron CASK - chr3R_4_21790001 chr3R_21790001 RAL-239 1028 chr3R 8339246 8339247 chr3R 21907534 21907534 5 13568288 11.0 15.5 13.2 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-239 1029 chr3R 9620954 9620957 chr3R 21907534 21907534 4 12286579 9.0 15.5 12.2 0.3 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-239 1030 chr3R 21907534 21907534 chr3R 28831801 28831804 15 6924268 19.0 12.5 15.8 0.9 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-239 1031 chr3R 21907535 21907535 chr3R 28831801 28831802 10 6924267 19.0 12.5 15.8 0.6 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-239 1032 chr3R 21907536 21907536 chr3R 28831801 28831802 18 6924266 19.0 12.5 15.8 1.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-239 1033 chr3R 21924014 21924037 chr3R 21924101 21924119 4 85 5.5 2.0 3.8 0.8 105 chr3R 21924014 intergenic not near genes chr3R 21924066 intergenic not near genes chr3R 21924119 intergenic not near genes chr3R_4_21920001 chr3R_21920001 RAL-239 1034 chr3R 22234685 22234711 chr3R 22236004 22236030 pogo 8 1318 2.5 1.0 1.8 2.9 1345 chr3R 22234685 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236030 intron SKIP + chr3R_8_22235001 chr3R_22235001 RAL-239 1035 chr3R 22239491 22239513 chr3R 22248551 22248573 roo 4 9058 0.5 2.0 1.2 1.8 9082 chr3R 22239491 intron SKIP + chr3R 22244032 intron SKIP + chr3R 22248573 intron SKIP + chr3R_4_22240001 chr3R_22240001 RAL-239 1036 chr3R 22292471 22292506 chr3R 22292551 22292586 10 80 1.5 3.5 2.5 2.9 115 chr3R 22292471 intron SKIP + chr3R 22292528 intron SKIP + chr3R 22292586 intron SKIP + chr3R_10_22290001 chr3R_22290001 RAL-239 1037 chr3R 22428586 22428603 chr3R 22428662 22428679 4 76 1.0 5.5 3.2 1.0 93 chr3R 22428586 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428679 intron CG13847 - chr3R_4_22425001 chr3R_22425001 RAL-239 1038 chr3R 22450547 22450578 chr3R 22453182 22453210 NOF 7 2637 2.0 2.5 2.2 2.2 2663 chr3R 22450547 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453210 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-239 1039 chr3R 22492388 22492415 chr3R 22492469 22492496 6 81 0.0 2.0 1.0 3.0 108 chr3R 22492388 intergenic CG7045 + chr3R 22492442 intergenic CG7045 + chr3R 22492496 intergenic CG7045 +,CG7046 + chr3R_6_22490001 chr3R_22490001 RAL-239 1040 chr3R 22538443 22538470 chr3R 22538528 22538554 10 84 2.5 1.5 2.0 3.3 111 chr3R 22538443 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538554 intron CG5326 - chr3R_10_22535001 chr3R_22535001 RAL-239 1041 chr3R 22797758 22797766 chr3R 22797844 22797851 4 86 5.0 0.0 2.5 1.1 93 chr3R 22797758 intergenic not near genes chr3R 22797804 intergenic not near genes chr3R 22797851 intergenic not near genes chr3R_4_22795001 chr3R_22795001 RAL-239 1042 chr3R 22797767 22797924 chr3R 22797843 22798020 10 91 0.0 0.0 0.0 10.0 253 chr3R 22797767 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798020 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-239 1043 chr3R 22860152 22860175 chr3R 22860244 22860267 7 92 4.0 1.0 2.5 2.0 115 chr3R 22860152 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860267 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-239 1044 chr3R 22888199 22888215 chr3R 22888471 22888487 6 271 4.0 1.5 2.8 1.6 288 chr3R 22888199 intergenic not near genes chr3R 22888343 intergenic not near genes chr3R 22888487 intergenic not near genes chr3R_6_22885001 chr3R_22885001 RAL-239 1045 chr3R 22919162 22919177 chr3R 22919259 22919274 5 97 4.5 3.5 4.0 1.0 112 chr3R 22919162 intron klg + chr3R 22919218 intron klg + chr3R 22919274 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-239 1046 chr3R 22919178 22919189 chr3R 22919257 22919272 5 89 1.5 3.0 2.2 1.6 94 chr3R 22919178 intron klg + chr3R 22919225 intron klg + chr3R 22919272 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-239 1047 chr3R 22927871 22927902 chr3R 22927966 22927997 13 93 5.5 7.0 6.2 1.8 126 chr3R 22927871 intron klg + chr3R 22927934 intron klg + chr3R 22927997 intron klg + chr3R_13_22925001 chr3R_22925001 RAL-239 1048 chr3R 22990349 22990380 chr3R 22990604 22990622 9 249 4.5 5.0 4.8 1.6 273 chr3R 22990349 intron,exon Nha2 -,Or94b + chr3R 22990486 intron,intron Nha2 -,Or94b + chr3R 22990622 intron Nha2 - chr3R_9_22990001 chr3R_22990001 RAL-239 1049 chr3R 23016201 23016227 chr3R 23016278 23016304 6 77 2.0 2.5 2.2 1.9 103 chr3R 23016201 intergenic not near genes chr3R 23016252 intergenic not near genes chr3R 23016304 intergenic not near genes chr3R_6_23015001 chr3R_23015001 RAL-239 1050 chr3R 23105329 23105347 chr3R 23106652 23106670 6 1323 2.5 2.0 2.2 1.9 1341 chr3R 23105329 intron CG13830 - chr3R 23106000 intron CG13830 - chr3R 23106670 intron CG13830 - chr3R_6_23105001 chr3R_23105001 RAL-239 1051 chr3R 23180196 23180215 chr3R 23180267 23180298 8 78 1.5 2.0 1.8 2.9 102 chr3R 23180196 intron Irk1 + chr3R 23180247 intron Irk1 + chr3R 23180298 intron Irk1 + chr3R_8_23180001 chr3R_23180001 RAL-239 1052 chr3R 23182687 23182706 chr3R 23182770 23182789 7 83 0.0 4.0 2.0 2.3 102 chr3R 23182687 intron Irk1 + chr3R 23182738 intron Irk1 + chr3R 23182789 intron Irk1 + chr3R_7_23180001 chr3R_23180001 RAL-239 1053 chr3R 23277346 23277371 chr3R 23277436 23277451 4 86 0.5 0.0 0.2 3.3 105 chr3R 23277346 intron orb - chr3R 23277398 intron orb - chr3R 23277451 intron orb - chr3R_4_23275001 chr3R_23275001 RAL-239 1054 chr3R 23303631 23303658 chr3R 23303708 23303736 8 78 0.0 0.5 0.2 6.7 105 chr3R 23303631 intron pnt - chr3R 23303684 intron pnt - chr3R 23303736 intron pnt - chr3R_8_23300001 chr3R_23300001 RAL-239 1055 chr3R 23342638 23342641 chr3R 23342773 23342773 4 134 6.0 1.0 3.5 0.9 135 chr3R 23342638 intron pnt - chr3R 23342706 intron pnt - chr3R 23342773 intron pnt - chr3R_4_23340001 chr3R_23340001 RAL-239 1056 chr3R 23533534 23533542 chr3R 23533626 23533634 4 92 7.0 15.0 11.0 0.3 100 chr3R 23533534 exon CG10170 - chr3R 23533584 exon CG10170 - chr3R 23533634 exon CG10170 - chr3R_4_23530001 chr3R_23530001 RAL-239 1057 chr3R 23557872 23557890 chr3R 23557950 23557967 4 78 4.5 3.5 4.0 0.8 95 chr3R 23557872 5` UTR beat-IV + chr3R 23557920 intron beat-IV + chr3R 23557967 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-239 1058 chr3R 23564448 23564463 chr3R 23564592 23564607 4 144 0.0 0.5 0.2 3.3 159 chr3R 23564448 intron beat-IV + chr3R 23564528 intron beat-IV + chr3R 23564607 intron beat-IV + chr3R_4_23560001 chr3R_23560001 RAL-239 1059 chr3R 23572753 23572781 chr3R 23572873 23572901 6 117 2.0 3.0 2.5 1.7 148 chr3R 23572753 intron beat-IV + chr3R 23572827 intron beat-IV + chr3R 23572901 intron beat-IV + chr3R_6_23570001 chr3R_23570001 RAL-239 1060 chr3R 23608574 23608601 chr3R 23608700 23608729 12 126 4.5 2.5 3.5 2.7 155 chr3R 23608574 intron CG31145 - chr3R 23608652 intron CG31145 - chr3R 23608729 exon CG31145 - chr3R_12_23605001 chr3R_23605001 RAL-239 1061 chr3R 23684711 23684729 chr3R 23685184 23685215 roo 5 479 1.5 8.5 5.0 0.8 504 chr3R 23684711 intron CG18754 + chr3R 23684963 intron CG18754 + chr3R 23685215 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-239 1062 chr3R 23688478 23688498 chr3R 23688569 23688589 6 90 4.0 5.5 4.8 1.0 111 chr3R 23688478 intergenic SPE + chr3R 23688534 intergenic SPE +,CG10254 - chr3R 23688589 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-239 1063 chr3R 23714712 23714742 chr3R 23714806 23714836 6 94 0.5 0.0 0.2 5.0 124 chr3R 23714712 intron nau - chr3R 23714774 intron nau - chr3R 23714836 intron nau - chr3R_6_23710001 chr3R_23710001 RAL-239 1064 chr3R 23820637 23820669 chr3R 23820721 23820753 9 83 4.0 1.0 2.5 2.6 116 chr3R 23820637 5` UTR CG34355 + chr3R 23820695 5` UTR CG34355 + chr3R 23820753 5` UTR CG34355 + chr3R_9_23820001 chr3R_23820001 RAL-239 1065 chr3R 23940404 23940421 chr3R 23940513 23940530 6 108 3.5 4.5 4.0 1.2 126 chr3R 23940404 intron Gdh - chr3R 23940467 intron Gdh - chr3R 23940530 intron Gdh - chr3R_6_23940001 chr3R_23940001 RAL-239 1066 chr3R 23949056 23949075 chr3R 23949133 23949152 4 77 0.0 3.5 1.8 1.4 96 chr3R 23949056 intergenic not near genes chr3R 23949104 intergenic not near genes chr3R 23949152 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-239 1067 chr3R 24021400 24021426 chr3R 24021711 24021738 5 312 3.5 0.0 1.8 1.8 338 chr3R 24021400 intron KrT95D - chr3R 24021569 intron KrT95D - chr3R 24021738 intron KrT95D - chr3R_5_24020001 chr3R_24020001 RAL-239 1068 chr3R 24072088 24072119 chr3R 24072526 24072539 jockey 10 436 5.0 4.0 4.5 1.8 451 chr3R 24072088 intron 4EHP - chr3R 24072314 intron 4EHP - chr3R 24072539 intron 4EHP - chr3R_10_24070001 chr3R_24070001 RAL-239 1069 chr3R 24076915 24076946 chr3R 24078382 24078413 hobo 4 1466 3.5 3.5 3.5 0.9 1498 chr3R 24076915 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-239 1070 chr3R 24100477 24100600 chr3R 24100572 24100824 6 159 1.5 1.5 1.5 2.4 347 chr3R 24100477 intron 4EHP - chr3R 24100650 intron 4EHP - chr3R 24100824 intron 4EHP - chr3R_6_24100001 chr3R_24100001 RAL-239 1071 chr3R 24433477 24433500 chr3R 24433556 24433579 6 78 1.5 3.0 2.2 1.9 102 chr3R 24433477 intron nAChRalpha1 - chr3R 24433528 intron nAChRalpha1 - chr3R 24433579 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-239 1072 chr3R 24473260 24473284 chr3R 24473536 24473560 5 275 2.5 2.0 2.2 1.6 300 chr3R 24473260 intergenic not near genes chr3R 24473410 intergenic not near genes chr3R 24473560 intergenic not near genes chr3R_5_24470001 chr3R_24470001 RAL-239 1073 chr3R 24624377 24624395 chr3R 24624466 24624484 6 88 1.0 4.5 2.8 1.6 107 chr3R 24624377 intron Syx18 - chr3R 24624430 intron Syx18 - chr3R 24624484 exon Syx18 - chr3R_6_24620001 chr3R_24620001 RAL-239 1074 chr3R 24728337 24728360 chr3R 24728509 24728533 4 173 4.5 2.0 3.2 1.0 196 chr3R 24728337 intron tok + chr3R 24728435 intron tok + chr3R 24728533 intron tok + chr3R_4_24725001 chr3R_24725001 RAL-239 1075 chr3R 24789988 24790011 chr3R 24790132 24790155 7 144 2.5 4.0 3.2 1.7 167 chr3R 24789988 intron,5` UTR Ets96B +,CG13634 - chr3R 24790072 intron,5` UTR Ets96B +,CG13634 - chr3R 24790155 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-239 1076 chr3R 24842105 24842137 chr3R 24842190 24842222 14 85 3.5 2.5 3.0 3.5 117 chr3R 24842105 5` UTR Esp + chr3R 24842164 5` UTR Esp + chr3R 24842222 5` UTR Esp + chr3R_14_24840001 chr3R_24840001 RAL-239 1077 chr3R 24927123 24927161 chr3R 24931914 24931952 Doc 11 4788 1.0 2.0 1.5 4.4 4829 chr3R 24927123 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931952 intergenic CG11771 + chr3R_11_24925001 chr3R_24925001 RAL-239 1078 chr3R 24965944 24965965 chr3R 24966018 24966018 11 72 3.5 6.0 4.8 1.9 74 chr3R 24965944 intergenic not near genes chr3R 24965981 intergenic not near genes chr3R 24966018 intergenic not near genes chr3R_11_24965001 chr3R_24965001 RAL-239 1079 chr3R 24972479 24972495 chr3R 24972549 24972563 4 73 2.0 2.5 2.2 1.2 84 chr3R 24972479 intergenic not near genes chr3R 24972521 intergenic not near genes chr3R 24972563 intergenic not near genes chr3R_4_24970001 chr3R_24970001 RAL-239 1080 chr3R 24974913 24974936 chr3R 24974992 24975015 6 79 2.0 3.5 2.8 1.6 102 chr3R 24974913 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975015 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-239 1081 chr3R 25004901 25004908 chr3R 25004984 25004991 8 83 5.5 4.0 4.8 1.4 90 chr3R 25004901 intron tnc + chr3R 25004946 intron tnc + chr3R 25004991 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-239 1082 chr3R 25088777 25088809 chr3R 25088861 25088894 7 85 3.0 3.0 3.0 1.8 117 chr3R 25088777 intergenic not near genes chr3R 25088836 intergenic not near genes chr3R 25088894 intergenic not near genes chr3R_7_25085001 chr3R_25085001 RAL-239 1083 chr3R 25209597 25209624 chr3R 25209679 25209706 8 82 3.5 3.5 3.5 1.8 109 chr3R 25209597 intron CG13654 + chr3R 25209652 intron CG13654 + chr3R 25209706 intron CG13654 + chr3R_8_25205001 chr3R_25205001 RAL-239 1084 chr3R 25362211 25362221 chr3R 25362400 25362417 4 194 2.0 1.5 1.8 1.4 206 chr3R 25362211 intron Fur1 - chr3R 25362314 intron Fur1 - chr3R 25362417 intron Fur1 - chr3R_4_25360001 chr3R_25360001 RAL-239 1085 chr3R 25377093 25377124 chr3R 25377359 25377390 6 265 3.0 2.5 2.8 1.6 297 chr3R 25377093 intron Fur1 - chr3R 25377242 intron Fur1 - chr3R 25377390 intron Fur1 - chr3R_6_25375001 chr3R_25375001 RAL-239 1086 chr3R 25422066 25422095 chr3R 25422147 25422176 4 81 2.0 0.5 1.2 1.8 110 chr3R 25422066 intron Fur1 - chr3R 25422121 intron Fur1 - chr3R 25422176 intron Fur1 - chr3R_4_25420001 chr3R_25420001 RAL-239 1087 chr3R 25436490 25436509 chr3R 25436584 25436600 8 92 1.5 1.5 1.5 3.2 110 chr3R 25436490 intron Fur1 - chr3R 25436545 intron Fur1 - chr3R 25436600 intron Fur1 - chr3R_8_25435001 chr3R_25435001 RAL-239 1088 chr3R 25570042 25570078 chr3R 25570133 25570169 6 88 1.5 1.0 1.2 2.7 127 chr3R 25570042 intron msi + chr3R 25570106 intron msi + chr3R 25570169 intron msi + chr3R_6_25570001 chr3R_25570001 RAL-239 1089 chr3R 25669063 25669095 chr3R 25669157 25669187 4 93 1.5 1.0 1.2 1.8 124 chr3R 25669063 intron Lgr3 + chr3R 25669125 intron Lgr3 + chr3R 25669187 intron Lgr3 + chr3R_4_25665001 chr3R_25665001 RAL-239 1090 chr3R 25689126 25689160 chr3R 25689234 25689268 14 108 2.5 3.5 3.0 3.5 142 chr3R 25689126 intergenic not near genes chr3R 25689197 intergenic not near genes chr3R 25689268 intergenic not near genes chr3R_14_25685001 chr3R_25685001 RAL-239 1091 chr3R 25746590 25746618 chr3R 25747001 25747032 7 413 1.5 6.0 3.8 1.5 442 chr3R 25746590 intron LpR1 - chr3R 25746811 intron LpR1 - chr3R 25747032 exon LpR1 - chr3R_7_25745001 chr3R_25745001 RAL-239 1092 chr3R 25765879 25765908 chr3R 25765957 25765987 12 77 3.5 1.5 2.5 3.4 108 chr3R 25765879 intergenic not near genes chr3R 25765933 intergenic not near genes chr3R 25765987 intergenic not near genes chr3R_12_25765001 chr3R_25765001 RAL-239 1093 chr3R 25801268 25801283 chr3R 25802252 25802267 4 984 2.0 3.0 2.5 1.1 999 chr3R 25801268 intergenic not near genes chr3R 25801768 intergenic not near genes chr3R 25802267 intergenic not near genes chr3R_4_25800001 chr3R_25800001 RAL-239 1094 chr3R 25832697 25832724 chr3R 25841875 25841906 roo 13 9181 2.5 4.5 3.5 2.9 9209 chr3R 25832697 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 RAL-239 1095 chr3R 26093846 26093865 chr3R 26093922 26093943 6 78 3.0 2.0 2.5 1.7 97 chr3R 26093846 intron dys - chr3R 26093894 intron dys - chr3R 26093943 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-239 1096 chr3R 26104070 26104096 chr3R 26105151 26105175 7 1080 9.0 5.0 7.0 0.9 1105 chr3R 26104070 intergenic not near genes chr3R 26104622 intergenic not near genes chr3R 26105175 intergenic not near genes chr3R_7_26100001 chr3R_26100001 RAL-239 1097 chr3R 26121956 26121979 chr3R 26122052 26122076 8 94 0.0 3.5 1.8 2.9 120 chr3R 26121956 intron CG31324 + chr3R 26122016 intron CG31324 + chr3R 26122076 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-239 1098 chr3R 26166186 26166209 chr3R 26166272 26166293 7 83 0.5 2.5 1.5 2.8 107 chr3R 26166186 intergenic not near genes chr3R 26166240 intergenic not near genes chr3R 26166293 intergenic not near genes chr3R_7_26165001 chr3R_26165001 RAL-239 1099 chr3R 26265825 26265848 chr3R 26265913 26265936 11 88 2.5 3.5 3.0 2.8 111 chr3R 26265825 intron CG6154 + chr3R 26265880 intron CG6154 + chr3R 26265936 intron CG6154 + chr3R_11_26265001 chr3R_26265001 RAL-239 1100 chr3R 26292103 26292139 chr3R 26292183 26292219 5 80 1.5 0.5 1.0 2.5 116 chr3R 26292103 intergenic not near genes chr3R 26292161 intergenic not near genes chr3R 26292219 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-239 1101 chr3R 26320360 26320371 chr3R 26320547 26320551 4 185 2.5 3.5 3.0 1.0 191 chr3R 26320360 intron CG33970 + chr3R 26320456 intron CG33970 + chr3R 26320551 intron CG33970 + chr3R_4_26320001 chr3R_26320001 RAL-239 1102 chr3R 26325684 26325707 chr3R 26325772 26325795 15 86 3.5 5.5 4.5 2.7 111 chr3R 26325684 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325795 intron CG33970 + chr3R_15_26325001 chr3R_26325001 RAL-239 1103 chr3R 26376330 26376355 chr3R 26385490 26385510 roo 5 9159 3.0 0.0 1.5 2.0 9180 chr3R 26376330 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-239 1104 chr3R 26425893 26425908 chr3R 26425965 26425991 6 80 5.0 4.0 4.5 1.1 98 chr3R 26425893 intron CR31084 + chr3R 26425942 intron CR31084 + chr3R 26425991 intron CR31084 + chr3R_6_26425001 chr3R_26425001 RAL-239 1105 chr3R 26450520 26450548 chr3R 26450618 26450645 4 98 3.5 4.0 3.8 0.8 125 chr3R 26450520 exon Hex-t1 + chr3R 26450582 3` UTR Hex-t1 + chr3R 26450645 intergenic Hex-t2 +,Hex-t1 + chr3R_4_26450001 chr3R_26450001 RAL-239 1106 chr3R 26553213 26553239 chr3R 26553716 26553734 10 503 1.5 1.0 1.2 4.5 521 chr3R 26553213 intron scrib + chr3R 26553474 intron scrib + chr3R 26553734 intron scrib + chr3R_10_26550001 chr3R_26550001 RAL-239 1107 chr3R 26558330 26558357 chr3R 26565638 26565666 Stalker4 6 7310 3.0 4.5 3.8 1.2 7336 chr3R 26558330 intron scrib + chr3R 26561998 intron scrib + chr3R 26565666 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-239 1108 chr3R 26642746 26642762 chr3R 26643140 26643142 jockey 6 391 0.5 2.0 1.2 2.7 396 chr3R 26642746 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643142 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-239 1109 chr3R 26660645 26660679 chr3R 26660729 26660759 9 83 4.0 6.5 5.2 1.5 114 chr3R 26660645 intron beat-VII - chr3R 26660702 intron beat-VII - chr3R 26660759 intron beat-VII - chr3R_9_26660001 chr3R_26660001 RAL-239 1110 chr3R 26695568 26695584 chr3R 26695676 26695693 4 109 3.0 3.5 3.2 1.0 125 chr3R 26695568 intergenic not near genes chr3R 26695630 intergenic not near genes chr3R 26695693 intergenic not near genes chr3R_4_26695001 chr3R_26695001 RAL-239 1111 chr3R 26750940 26750950 chr3R 26751056 26751070 4 122 3.5 0.0 1.8 1.4 130 chr3R 26750940 intergenic not near genes chr3R 26751005 intergenic not near genes chr3R 26751070 intergenic not near genes chr3R_4_26750001 chr3R_26750001 RAL-239 1112 chr3R 26770242 26770269 chr3R 26770319 26770346 7 77 3.0 1.5 2.2 2.2 104 chr3R 26770242 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770346 intergenic not near genes chr3R_7_26770001 chr3R_26770001 RAL-239 1113 chr3R 26810552 26810586 chr3R 26811037 26811071 roo 6 485 1.5 3.0 2.2 1.9 519 chr3R 26810552 intron Tl + chr3R 26810812 intron Tl + chr3R 26811071 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-239 1114 chr3R 26854778 26854800 chr3R 26855284 26855294 4 502 2.5 2.5 2.5 1.1 516 chr3R 26854778 intron Lerp - chr3R 26855036 intron Lerp - chr3R 26855294 intron Lerp - chr3R_4_26855001 chr3R_26855001 RAL-239 1115 chr3R 26917296 26917317 chr3R 26917379 26917399 6 83 1.5 2.0 1.8 2.1 103 chr3R 26917296 intron sda + chr3R 26917348 intron sda + chr3R 26917399 intron sda + chr3R_6_26915001 chr3R_26915001 RAL-239 1116 chr3R 27140520 27140546 chr3R 27148130 27148156 412 11 7609 4.0 3.0 3.5 2.4 7636 chr3R 27140520 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-239 1117 chr3R 27241403 27241423 chr3R 27244703 27244725 9 3301 26.0 29.0 27.5 0.3 3322 chr3R 27241403 exon CG17991 + chr3R 27243064 exon CG18766 - chr3R 27244725 intron CG18766 - chr3R_9_27240001 chr3R_27240001 RAL-239 1118 chr3R 27315993 27316012 chr3R 27316069 27316088 7 74 5.5 2.5 4.0 1.4 95 chr3R 27315993 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316088 exon CG3339 - chr3R_7_27315001 chr3R_27315001 RAL-239 1119 chr3R 27342796 27342816 chr3R 27351372 27351396 Tirant 6 8580 1.0 0.5 0.8 3.3 8600 chr3R 27342796 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351396 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-239 1120 chr3R 27393686 27393705 chr3R 27393968 27393987 8 282 1.0 3.0 2.0 2.7 301 chr3R 27393686 intron side - chr3R 27393836 intron side - chr3R 27393987 intron side - chr3R_8_27390001 chr3R_27390001 RAL-239 1121 chr3R 27457869 27457898 chr3R 27457961 27457990 5 91 1.0 0.0 0.5 3.3 121 chr3R 27457869 intergenic not near genes chr3R 27457930 intergenic not near genes chr3R 27457990 intergenic not near genes chr3R_5_27455001 chr3R_27455001 RAL-239 1122 chr3R 27595052 27595085 chr3R 27595135 27595168 9 83 0.5 1.5 1.0 4.5 116 chr3R 27595052 intron CG5639 - chr3R 27595110 intron CG5639 - chr3R 27595168 intron CG5639 - chr3R_9_27595001 chr3R_27595001 RAL-239 1123 chr3R 27619703 27619729 chr3R 27619814 27619827 6 110 1.5 2.0 1.8 2.1 124 chr3R 27619703 intron Tusp + chr3R 27619765 intron Tusp + chr3R 27619827 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-239 1124 chr3R 27622241 27622261 chr3R 27622327 27622354 8 92 1.5 2.5 2.0 2.7 113 chr3R 27622241 intron Tusp + chr3R 27622298 intron Tusp + chr3R 27622354 intron Tusp + chr3R_8_27620001 chr3R_27620001 RAL-239 1125 chr3R 27627090 27627119 chr3R 27627192 27627213 8 98 3.0 6.5 4.8 1.4 123 chr3R 27627090 intron Tusp + chr3R 27627152 intron Tusp + chr3R 27627213 intron Tusp + chr3R_8_27625001 chr3R_27625001 RAL-239 1126 chr3R 27706791 27706802 chr3R 27706867 27706879 4 76 2.0 2.0 2.0 1.3 88 chr3R 27706791 intergenic CG12428 -,CG12877 + chr3R 27706835 intergenic CG12428 -,CG12877 + chr3R 27706879 intergenic CG12428 -,CG12877 + chr3R_4_27705001 chr3R_27705001 RAL-239 1127 chr3R 27799945 27799959 chr3R 27800027 27800041 5 82 3.5 1.5 2.5 1.4 96 chr3R 27799945 intron CG34353 - chr3R 27799993 intron CG34353 - chr3R 27800041 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-239 1128 chr3R 27856758 27856786 chr3R 27858240 27858269 hopper2 4 1477 2.0 1.5 1.8 1.4 1511 chr3R 27856758 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858269 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-239 1129 chr3R 27875717 27875723 chr3R 27882768 27882776 297 4 7054 3.0 3.5 3.2 1.0 7059 chr3R 27875717 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882776 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-239 1130 chr3R 28005767 28005786 chr3R 28005845 28005868 6 81 2.0 2.0 2.0 2.0 101 chr3R 28005767 intergenic not near genes chr3R 28005818 intergenic not near genes chr3R 28005868 intergenic not near genes chr3R_6_28005001 chr3R_28005001 RAL-239 1131 chr3R 28068495 28068519 chr3R 28073937 28073961 I-element 7 5442 2.0 2.5 2.2 2.2 5466 chr3R 28068495 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073961 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-239 1132 chr3R 28102581 28102602 chr3R 28102816 28102839 5 237 4.0 2.5 3.2 1.2 258 chr3R 28102581 intergenic not near genes chr3R 28102710 intergenic not near genes chr3R 28102839 intergenic not near genes chr3R_5_28100001 chr3R_28100001 RAL-239 1133 chr3R 28118856 28118881 chr3R 28118937 28118957 7 79 3.0 4.0 3.5 1.6 101 chr3R 28118856 intergenic not near genes chr3R 28118906 intergenic not near genes chr3R 28118957 intergenic not near genes chr3R_7_28115001 chr3R_28115001 RAL-239 1134 chr3R 28173665 28173677 chr3R 28181244 28181255 mdg1 5 7579 1.5 0.0 0.8 2.8 7590 chr3R 28173665 intron CG34354 + chr3R 28177460 intron CG34354 + chr3R 28181255 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-239 1135 chr3R 28201846 28201853 chr3R 28201928 28201952 4 88 2.0 2.5 2.2 1.2 106 chr3R 28201846 intron CG34354 + chr3R 28201899 intron CG34354 + chr3R 28201952 intron CG34354 + chr3R_4_28200001 chr3R_28200001 RAL-239 1136 chr3R 28223905 28223934 chr3R 28224361 28224389 6 456 2.5 0.5 1.5 2.4 484 chr3R 28223905 intron CG34354 + chr3R 28224147 intron CG34354 + chr3R 28224389 intron CG34354 + chr3R_6_28220001 chr3R_28220001 RAL-239 1137 chr3R 28253338 28253373 chr3R 28255848 28255883 jockey 7 2508 2.0 3.0 2.5 2.0 2545 chr3R 28253338 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-239 1138 chr3R 28282987 28283007 chr3R 28283616 28283636 5 629 2.0 2.0 2.0 1.7 649 chr3R 28282987 exon CG34436 + chr3R 28283312 exon CG34436 + chr3R 28283636 intergenic CG34437 +,CG34436 + chr3R_5_28280001 chr3R_28280001 RAL-239 1139 chr3R 28478987 28479165 chr3R 28479082 28479248 10 91 1.0 2.0 1.5 4.0 261 chr3R 28478987 intergenic not near genes chr3R 28479118 intergenic not near genes chr3R 28479248 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-239 1140 chr3R 28537814 28537848 chr3R 28537898 28537932 6 83 1.0 2.5 1.8 2.1 118 chr3R 28537814 intron Ppn - chr3R 28537873 intron Ppn - chr3R 28537932 intron Ppn - chr3R_6_28535001 chr3R_28535001 RAL-239 1141 chr3R 28599374 28599403 chr3R 28599521 28599550 6 147 3.0 0.0 1.5 2.4 176 chr3R 28599374 intergenic Noa36 - chr3R 28599462 intergenic Noa36 - chr3R 28599550 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-239 1142 chr3R 28652983 28653011 chr3R 28653081 28653095 12 94 5.0 3.5 4.2 2.3 112 chr3R 28652983 intergenic not near genes chr3R 28653039 intergenic not near genes chr3R 28653095 intergenic not near genes chr3R_12_28650001 chr3R_28650001 RAL-239 1143 chr3R 28792871 28792901 chr3R 28797966 28797996 jockey 4 5095 0.0 2.0 1.0 2.0 5125 chr3R 28792871 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797996 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-239 1144 chr3R 21907534 21907536 chr3R 28831799 28831802 35 6924266 19.0 13.0 16.0 2.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-239 1145 chr3R 29009960 29009984 chr3R 29010066 29010089 5 106 1.0 1.0 1.0 2.5 129 chr3R 29009960 intron wat - chr3R 29010024 intron wat - chr3R 29010089 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-239 1146 chr3R 29079379 29079407 chr3R 29080751 29080778 NOF 7 1372 2.0 2.0 2.0 2.3 1399 chr3R 29079379 intron CG11873 + chr3R 29080078 intron CG11873 + chr3R 29080778 intron CG11873 + chr3R_7_29080001 chr3R_29080001 RAL-239 1147 chr3R 29203849 29203854 chr3R 29203929 29203933 6 79 4.5 0.0 2.2 1.9 84 chr3R 29203849 intron CG14508 - chr3R 29203891 intron CG14508 - chr3R 29203933 intron CG14508 - chr3R_6_29200001 chr3R_29200001 RAL-239 1148 chr3R 29213060 29213089 chr3R 29213142 29213172 11 80 2.5 3.5 3.0 2.8 112 chr3R 29213060 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213172 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-239 1149 chr3R 29236811 29236986 chr3R 29247122 29247255 9 10296 21.0 25.0 23.0 0.4 10444 chr3R 29236811 exon CG11951 - chr3R 29242033 exon CG31445 - chr3R 29247255 exon SP1029 - chr3R_9_29240001 chr3R_29240001 RAL-239 1150 chr3R 29237256 29237285 chr3R 29239273 29239283 15 2016 15.5 5.0 10.2 1.3 2027 chr3R 29237256 exon CG11951 - chr3R 29238270 intron CG11951 - chr3R 29239283 exon CG31427 - chr3R_15_29235001 chr3R_29235001 RAL-239 1151 chr3R 29239228 29239249 chr3R 29245519 29245539 4 6288 4.5 18.5 11.5 0.3 6311 chr3R 29239228 exon CG31427 - chr3R 29242384 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-239 1152 chr3R 29332360 29332378 chr3R 29332439 29332461 7 85 1.5 2.0 1.8 2.5 101 chr3R 29332360 intergenic not near genes chr3R 29332410 intergenic not near genes chr3R 29332461 intergenic not near genes chr3R_7_29330001 chr3R_29330001 RAL-239 1153 chr3R 29356067 29356080 chr3R 29356148 29356161 5 81 1.5 4.0 2.8 1.3 94 chr3R 29356067 intergenic CR45547 - chr3R 29356114 intergenic CR45547 - chr3R 29356161 3` UTR CR45547 - chr3R_5_29355001 chr3R_29355001 RAL-239 1154 chr3R 29384848 29384865 chr3R 29384972 29384989 4 124 3.5 3.5 3.5 0.9 141 chr3R 29384848 intron Ptp99A + chr3R 29384918 intron Ptp99A + chr3R 29384989 intron Ptp99A + chr3R_4_29380001 chr3R_29380001 RAL-239 1155 chr3R 29384866 29384875 chr3R 29384970 29384999 7 112 2.5 3.5 3.0 1.8 133 chr3R 29384866 intron Ptp99A + chr3R 29384932 intron Ptp99A + chr3R 29384999 intron Ptp99A + chr3R_7_29380001 chr3R_29380001 RAL-239 1156 chr3R 29406612 29406651 chr3R 29407898 29407911 jockey 9 1276 2.5 3.0 2.8 2.4 1299 chr3R 29406612 intron Ptp99A + chr3R 29407262 intron Ptp99A + chr3R 29407911 intron Ptp99A + chr3R_9_29405001 chr3R_29405001 RAL-239 1157 chr3R 29472022 29472028 chr3R 29472112 29472121 5 92 2.0 3.5 2.8 1.3 99 chr3R 29472022 intron Ptp99A + chr3R 29472072 intron Ptp99A + chr3R 29472121 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-239 1158 chr3R 29505916 29505926 chr3R 29505993 29506003 5 77 0.5 7.5 4.0 1.0 87 chr3R 29505916 intergenic not near genes chr3R 29505960 intergenic not near genes chr3R 29506003 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-239 1159 chr3R 29539433 29539458 chr3R 29539508 29539534 5 75 0.5 0.0 0.2 4.2 101 chr3R 29539433 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539534 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-239 1160 chr3R 29590374 29590402 chr3R 29590467 29590485 20 92 2.5 4.5 3.5 4.4 111 chr3R 29590374 intron CG31041 - chr3R 29590430 intron CG31041 - chr3R 29590485 intron CG31041 - chr3R_20_29590001 chr3R_29590001 RAL-239 1161 chr3R 29627302 29627315 chr3R 29627714 29627717 4 410 0.0 5.5 2.8 1.1 415 chr3R 29627302 intergenic not near genes chr3R 29627510 intergenic not near genes chr3R 29627717 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-239 1162 chr3R 29689941 29689960 chr3R 29690014 29690036 6 76 2.0 1.5 1.8 2.1 95 chr3R 29689941 intergenic not near genes chr3R 29689988 intergenic not near genes chr3R 29690036 intergenic not near genes chr3R_6_29685001 chr3R_29685001 RAL-239 1163 chr3R 29718151 29718171 chr3R 29718227 29718247 4 76 3.5 2.0 2.8 1.1 96 chr3R 29718151 intergenic not near genes chr3R 29718199 intergenic CG15506 + chr3R 29718247 intergenic CG15506 + chr3R_4_29715001 chr3R_29715001 RAL-239 1164 chr3R 29753533 29753565 chr3R 29753662 29753693 11 128 1.5 1.0 1.2 5.0 160 chr3R 29753533 3` UTR yata + chr3R 29753613 3` UTR yata + chr3R 29753693 3` UTR yata + chr3R_11_29750001 chr3R_29750001 RAL-239 1165 chr3R 29880582 29880610 chr3R 29880667 29880668 9 77 2.0 3.0 2.5 2.6 86 chr3R 29880582 intron CG31038 + chr3R 29880625 intron CG31038 + chr3R 29880668 intron CG31038 + chr3R_9_29880001 chr3R_29880001 RAL-239 1166 chr3R 29882021 29882052 chr3R 29891177 29891209 roo 6 9157 1.5 1.5 1.5 2.4 9188 chr3R 29882021 intron CG31038 + chr3R 29886615 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-239 1167 chr3R 29900250 29900264 chr3R 29900346 29900363 6 97 2.0 5.0 3.5 1.3 113 chr3R 29900250 intron CG31038 + chr3R 29900306 intron CG31038 + chr3R 29900363 intron CG31038 + chr3R_6_29900001 chr3R_29900001 RAL-239 1168 chr3R 29923612 29923640 chr3R 29925465 29925487 6 1848 4.5 19.5 12.0 0.5 1875 chr3R 29923612 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924550 exon Jon99Cii - chr3R 29925487 exon Jon99Ci - chr3R_6_29920001 chr3R_29920001 RAL-239 1169 chr3R 29950577 29950597 chr3R 29950654 29950674 8 76 5.0 1.0 3.0 2.0 97 chr3R 29950577 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950674 intergenic TkR99D - chr3R_8_29950001 chr3R_29950001 RAL-239 1170 chr3R 29963478 29963511 chr3R 29963580 29963613 9 101 2.5 1.0 1.8 3.2 135 chr3R 29963478 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963613 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-239 1171 chr3R 29966067 29966075 chr3R 29966144 29966152 4 76 3.5 0.5 2.0 1.3 85 chr3R 29966067 intron TkR99D - chr3R 29966110 intron TkR99D - chr3R 29966152 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-239 1172 chr3R 30013675 30013698 chr3R 30013758 30013765 4 78 1.5 1.5 1.5 1.6 90 chr3R 30013675 intron CG7920 - chr3R 30013720 intron CG7920 - chr3R 30013765 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-239 1173 chr3R 30032169 30032180 chr3R 30032248 30032259 4 79 2.0 1.5 1.8 1.4 90 chr3R 30032169 intron Axn + chr3R 30032214 intron Axn + chr3R 30032259 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-239 1174 chr3R 30084867 30084886 chr3R 30086323 30086353 hobo 5 1465 0.0 5.0 2.5 1.4 1486 chr3R 30084867 intron sima + chr3R 30085610 intron sima + chr3R 30086353 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-239 1175 chr3R 30136951 30136977 chr3R 30137030 30137056 5 78 3.5 1.5 2.5 1.4 105 chr3R 30136951 exon AdoR - chr3R 30137004 intron AdoR - chr3R 30137056 intron AdoR - chr3R_5_30135001 chr3R_30135001 RAL-239 1176 chr3R 30181355 30181368 chr3R 30181441 30181454 4 86 1.5 0.0 0.8 2.2 99 chr3R 30181355 3` UTR Bet5 + chr3R 30181404 3` UTR Bet5 + chr3R 30181454 3` UTR Bet5 + chr3R_4_30180001 chr3R_30180001 RAL-239 1177 chr3R 30252267 30252279 chr3R 30252393 30252407 4 127 18.0 5.0 11.5 0.3 140 chr3R 30252267 exon CG9682 + chr3R 30252337 exon CG9682 + chr3R 30252407 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-239 1178 chr3R 30252285 30252305 chr3R 30252391 30252411 7 116 8.0 5.0 6.5 0.9 126 chr3R 30252285 exon CG9682 + chr3R 30252348 exon CG9682 + chr3R 30252411 exon CG9682 + chr3R_7_30250001 chr3R_30250001 RAL-239 1179 chr3R 30262573 30262605 chr3R 30262670 30262701 8 97 1.5 0.5 1.0 4.0 128 chr3R 30262573 intergenic not near genes chr3R 30262637 intergenic not near genes chr3R 30262701 intergenic not near genes chr3R_8_30260001 chr3R_30260001 RAL-239 1180 chr3R 30317325 30317354 chr3R 30324917 30324945 roo 7 7591 1.0 1.5 1.2 3.2 7620 chr3R 30317325 intron hdc + chr3R 30321135 intron hdc + chr3R 30324945 intron hdc + chr3R_7_30320001 chr3R_30320001 RAL-239 1181 chr3R 30330492 30330519 chr3R 30330572 30330597 5 77 1.5 1.0 1.2 2.3 105 chr3R 30330492 intron hdc + chr3R 30330544 intron hdc + chr3R 30330597 intron hdc + chr3R_5_30330001 chr3R_30330001 RAL-239 1182 chr3R 30364854 30364865 chr3R 30365024 30365035 4 172 0.5 2.0 1.2 1.8 181 chr3R 30364854 3` UTR hdc + chr3R 30364944 3` UTR hdc + chr3R 30365035 3` UTR hdc + chr3R_4_30360001 chr3R_30360001 RAL-239 1183 chr3R 30440691 30440720 chr3R 30440950 30440978 13 259 2.5 4.5 3.5 2.9 287 chr3R 30440691 intron CG15537 - chr3R 30440834 intron CG15537 - chr3R 30440978 intron CG15537 - chr3R_13_30440001 chr3R_30440001 RAL-239 1184 chr3R 30458014 30458048 chr3R 30458094 30458128 7 80 1.0 1.5 1.2 3.2 114 chr3R 30458014 intron CG2224 - chr3R 30458071 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_7_30455001 chr3R_30455001 RAL-239 1185 chr3R 30471901 30471934 chr3R 30471977 30471978 5 69 1.0 4.0 2.5 1.4 77 chr3R 30471901 intron PH4alphaEFB + chr3R 30471940 intron PH4alphaEFB + chr3R 30471978 intron PH4alphaEFB + chr3R_5_30470001 chr3R_30470001 RAL-239 1186 chr3R 30480492 30480512 chr3R 30482940 30482979 jockey 6 2464 4.0 2.0 3.0 1.5 2487 chr3R 30480492 intron PH4alphaEFB + chr3R 30481736 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-239 1187 chr3R 30498405 30498414 chr3R 30498605 30498614 6 200 0.0 2.0 1.0 3.0 209 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498510 intron PH4alphaNE1 - chr3R 30498614 intron PH4alphaNE1 - chr3R_6_30495001 chr3R_30495001 RAL-239 1188 chr3R 30544654 30544669 chr3R 30544734 30544736 8 78 1.0 4.0 2.5 2.3 82 chr3R 30544654 intron tmod + chr3R 30544695 intron tmod + chr3R 30544736 intron tmod + chr3R_8_30540001 chr3R_30540001 RAL-239 1189 chr3R 30551269 30551299 chr3R 30551353 30551379 8 83 1.0 0.5 0.8 4.4 110 chr3R 30551269 intron tmod + chr3R 30551324 intron tmod + chr3R 30551379 intron tmod + chr3R_8_30550001 chr3R_30550001 RAL-239 1190 chr3R 30592507 30592526 chr3R 30592616 30592636 8 107 4.5 3.0 3.8 1.7 129 chr3R 30592507 intergenic CG2246 - chr3R 30592572 intergenic CG2246 - chr3R 30592636 intergenic CG2246 - chr3R_8_30590001 chr3R_30590001 RAL-239 1191 chr3R 30592529 30592538 chr3R 30592613 30592648 8 104 4.0 2.5 3.2 1.9 119 chr3R 30592529 intergenic CG2246 - chr3R 30592588 intergenic CG2246 - chr3R 30592648 intergenic CG2246 - chr3R_8_30590001 chr3R_30590001 RAL-239 1192 chr3R 30627605 30627638 chr3R 30627684 30627698 17 76 3.0 4.0 3.5 3.8 93 chr3R 30627605 exon CG2267 - chr3R 30627652 exon CG2267 - chr3R 30627698 exon CG2267 - chr3R_17_30625001 chr3R_30625001 RAL-239 1193 chr3R 30679518 30679552 chr3R 30686987 30687021 blood 8 7469 2.0 4.0 3.0 2.0 7503 chr3R 30679518 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-239 1194 chr3R 30690178 30690189 chr3R 30690244 30690260 7 78 2.5 2.5 2.5 2.0 82 chr3R 30690178 intergenic Spn100A + chr3R 30690219 intergenic Spn100A + chr3R 30690260 intergenic Spn100A + chr3R_7_30690001 chr3R_30690001 RAL-239 1195 chr3R 30900537 30900567 chr3R 30901672 30901681 8 1132 1.5 0.5 1.0 4.0 1144 chr3R 30900537 3` UTR Cyp4c3 + chr3R 30901109 intron CG33483 - chr3R 30901681 intron CG33483 - chr3R_8_30900001 chr3R_30900001 RAL-239 1196 chr3R 31042110 31042141 chr3R 31042197 31042228 6 87 2.5 1.0 1.8 2.1 118 chr3R 31042110 intron CanA1 + chr3R 31042169 intron CanA1 + chr3R 31042228 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-239 1197 chr3R 31067039 31067043 chr3R 31067159 31067166 4 123 5.5 3.5 4.5 0.7 127 chr3R 31067039 intron Sox100B + chr3R 31067102 intron Sox100B + chr3R 31067166 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-239 1198 chr3R 31067047 31067058 chr3R 31067154 31067184 10 120 2.5 3.0 2.8 2.6 137 chr3R 31067047 intron Sox100B + chr3R 31067116 intron Sox100B + chr3R 31067184 intron Sox100B + chr3R_10_31065001 chr3R_31065001 RAL-239 1199 chr3R 31074238 31074248 chr3R 31081836 31081846 springer 4 7598 3.5 2.0 2.8 1.1 7608 chr3R 31074238 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081846 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-239 1200 chr3R 31146754 31146777 chr3R 31146832 31146855 8 78 2.5 2.0 2.2 2.5 101 chr3R 31146754 intron Gycbeta100B + chr3R 31146804 intron Gycbeta100B + chr3R 31146855 intron Gycbeta100B + chr3R_8_31145001 chr3R_31145001 RAL-239 1201 chr3R 31274368 31274395 chr3R 31274445 31274473 11 73 2.5 0.5 1.5 4.4 105 chr3R 31274368 intergenic not near genes chr3R 31274420 intergenic not near genes chr3R 31274473 intergenic not near genes chr3R_11_31270001 chr3R_31270001 RAL-239 1202 chr3R 31279382 31279389 chr3R 31285573 31285580 diver 6 6190 4.0 4.5 4.2 1.2 6198 chr3R 31279382 intergenic not near genes chr3R 31282481 intergenic not near genes chr3R 31285580 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-239 1203 chr3R 31279402 31279406 chr3R 31285562 31285596 diver 5 6175 3.0 2.5 2.8 1.3 6194 chr3R 31279402 intergenic not near genes chr3R 31282499 intergenic not near genes chr3R 31285596 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-239 1204 chr3R 31348058 31348085 chr3R 31348135 31348162 7 74 3.5 2.0 2.8 1.8 104 chr3R 31348058 intron CG34347 + chr3R 31348110 intron CG34347 + chr3R 31348162 intron CG34347 + chr3R_7_31345001 chr3R_31345001 RAL-239 1205 chr3R 31412723 31412741 chr3R 31412816 31412832 5 91 1.5 4.0 2.8 1.3 109 chr3R 31412723 intron Gprk2 + chr3R 31412778 intron Gprk2 + chr3R 31412832 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-239 1206 chr3R 31413096 31413114 chr3R 31418296 31418314 copia 5 5200 4.5 0.0 2.2 1.6 5218 chr3R 31413096 intron Gprk2 + chr3R 31415705 intron Gprk2 + chr3R 31418314 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-239 1207 chr3R 31426884 31426910 chr3R 31426976 31427002 9 92 1.5 2.0 1.8 3.2 118 chr3R 31426884 intron Gprk2 + chr3R 31426943 intron Gprk2 + chr3R 31427002 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-239 1208 chr3R 31435364 31435391 chr3R 31435516 31435543 8 152 1.0 2.5 1.8 2.9 179 chr3R 31435364 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-239 1209 chr3R 31606141 31606170 chr3R 31606303 31606332 8 162 3.5 0.0 1.8 2.9 191 chr3R 31606141 intron CycG - chr3R 31606236 intron CycG - chr3R 31606332 intron CycG - chr3R_8_31605001 chr3R_31605001 RAL-239 1210 chr3R 31630063 31630081 chr3R 31630168 31630186 7 105 2.5 3.0 2.8 1.8 123 chr3R 31630063 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630186 intron kek6 + chr3R_7_31630001 chr3R_31630001 RAL-239 1211 chr3R 31691530 31691564 chr3R 31696296 31696330 Doc 18 4761 2.5 3.0 2.8 4.7 4800 chr3R 31691530 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696330 intergenic not near genes chr3R_18_31690001 chr3R_31690001 RAL-239 1212 chr3R 31774877 31774892 chr3R 31775022 31775037 4 144 2.0 2.0 2.0 1.3 160 chr3R 31774877 3` UTR sip3 + chr3R 31774957 3` UTR sip3 + chr3R 31775037 3` UTR sip3 + chr3R_4_31770001 chr3R_31770001 RAL-239 1213 chr3R 31860277 31860304 chr3R 31860357 31860384 6 80 2.0 2.0 2.0 2.0 107 chr3R 31860277 intron heph - chr3R 31860330 intron heph - chr3R 31860384 intron heph - chr3R_6_31860001 chr3R_31860001 RAL-239 1214 chr3R 31915484 31915515 chr3R 31915590 31915622 10 105 1.0 1.0 1.0 5.0 138 chr3R 31915484 intron heph - chr3R 31915553 intron heph - chr3R 31915622 intron heph - chr3R_10_31915001 chr3R_31915001 RAL-239 1215 chr4 76496 76523 chr4 81939 81939 I-element 5 5436 3.0 0.0 1.5 2.0 5443 chr4 76496 intron pan + chr4 79218 intron pan + chr4 81939 intron pan + chr4_5_75001 chr4_75001 RAL-239 1216 chr4 671605 671636 chr4 680187 680215 Tirant 10 8582 1.5 2.5 2.0 3.3 8610 chr4 671605 intron CG11360 + chr4 675910 intron CG11360 + chr4 680215 intron CG11360 + chr4_10_675001 chr4_675001 RAL-239 1217 chrX 428419 428436 chrX 434604 434621 3S18 4 6185 3.0 0.5 1.8 1.4 6202 chrX 428419 intron CG32816 - chrX 431520 intron CG32816 - chrX 434621 intron CG32816 - chrX_4_430001 chrX_430001 RAL-239 1218 chrX 447281 447303 chrX 447436 447458 5 153 1.0 3.5 2.2 1.6 177 chrX 447281 intron CG32816 - chrX 447370 intron CG32816 - chrX 447458 intron CG32816 - chrX_5_445001 chrX_445001 RAL-239 1219 chrX 551430 551437 chrX 558992 558997 412 4 7561 5.0 2.5 3.8 0.8 7567 chrX 551430 intron Appl + chrX 555214 intron Appl + chrX 558997 intron Appl + chrX_4_555001 chrX_555001 RAL-239 1220 chrX 802297 802317 chrX 802367 802389 6 70 3.5 4.5 4.0 1.2 92 chrX 802297 exon CG13359 - chrX 802343 exon CG13359 - chrX 802389 exon CG13359 - chrX_6_800001 chrX_800001 RAL-239 1221 chrX 827599 827618 chrX 835391 835410 roo 7 7792 4.0 1.0 2.5 2.0 7811 chrX 827599 intron CG43867 - chrX 831504 intron CG43867 - chrX 835410 intron CG43867 - chrX_7_830001 chrX_830001 RAL-239 1222 chrX 906706 906733 chrX 908495 908521 S-element 8 1789 1.5 6.5 4.0 1.6 1815 chrX 906706 intron CG43867 - chrX 907614 intron CG43867 - chrX 908521 intron CG43867 - chrX_8_905001 chrX_905001 RAL-239 1223 chrX 962010 962040 chrX 962476 962506 5 466 2.0 1.5 1.8 1.8 496 chrX 962010 intergenic not near genes chrX 962258 intergenic not near genes chrX 962506 intergenic not near genes chrX_5_960001 chrX_960001 RAL-239 1224 chrX 1091957 1091982 chrX 1092129 1092154 7 172 1.0 1.5 1.2 3.2 197 chrX 1091957 intron CG3655 - chrX 1092056 intron CG3655 - chrX 1092154 intron CG3655 - chrX_7_1090001 chrX_1090001 RAL-239 1225 chrX 1169758 1169789 chrX 1169840 1169874 12 82 1.5 2.5 2.0 4.0 116 chrX 1169758 intergenic not near genes chrX 1169816 intergenic not near genes chrX 1169874 intergenic not near genes chrX_12_1165001 chrX_1165001 RAL-239 1226 chrX 1518062 1518074 chrX 1523464 1523476 jockey 4 5402 2.0 5.5 3.8 0.8 5414 chrX 1518062 intergenic inc + chrX 1520769 intergenic not near genes chrX 1523476 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-239 1227 chrX 1954887 1954914 chrX 1962824 1962836 Stalker2 6 7928 2.5 0.5 1.5 2.4 7949 chrX 1954887 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962836 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-239 1228 chrX 2353829 2353862 chrX 2353906 2353939 8 76 1.5 1.0 1.2 3.6 110 chrX 2353829 intron ptr - chrX 2353884 intron ptr - chrX 2353939 intron ptr - chrX_8_2350001 chrX_2350001 RAL-239 1229 chrX 2399837 2399866 chrX 2408188 2408194 roo 5 8346 5.5 2.5 4.0 1.0 8357 chrX 2399837 intergenic not near genes chrX 2404016 intergenic not near genes chrX 2408194 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-239 1230 chrX 2888113 2888147 chrX 2888191 2888195 7 72 2.0 2.5 2.2 2.2 82 chrX 2888113 intron kirre + chrX 2888154 intron kirre + chrX 2888195 intron kirre + chrX_7_2885001 chrX_2885001 RAL-239 1231 chrX 3075641 3075666 chrX 3080947 3080972 Transpac 5 5306 2.5 3.0 2.8 1.3 5331 chrX 3075641 intron kirre + chrX 3078306 intron kirre + chrX 3080972 intron kirre + chrX_5_3075001 chrX_3075001 RAL-239 1232 chrX 3109457 3109476 chrX 3109533 3109548 6 76 0.0 1.5 0.8 3.3 91 chrX 3109457 intron kirre + chrX 3109502 intron kirre + chrX 3109548 intron kirre + chrX_6_3105001 chrX_3105001 RAL-239 1233 chrX 3306346 3306360 chrX 3306428 3306442 4 82 1.5 0.0 0.8 2.2 96 chrX 3306346 intron dnc + chrX 3306394 intron dnc + chrX 3306442 intron dnc + chrX_4_3305001 chrX_3305001 RAL-239 1234 chrX 3493102 3493124 chrX 3502261 3502281 roo 4 9158 2.5 0.5 1.5 1.6 9179 chrX 3493102 intron,intron CR44999 +,Gas8 - chrX 3497692 intron,intron CR44999 +,Gas8 - chrX 3502281 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-239 1235 chrX 3597548 3597563 chrX 3619716 3619731 roo 4 22168 3.5 3.0 3.2 1.0 22183 chrX 3597548 intron AstA-R1 + chrX 3608640 intron AstA-R1 + chrX 3619731 intron AstA-R1 + chrX_4_3605001 chrX_3605001 RAL-239 1236 chrX 3726762 3726792 chrX 3730159 3730188 NOF 7 3396 4.0 1.5 2.8 1.8 3426 chrX 3726762 intron tlk + chrX 3728475 intron tlk + chrX 3730188 intron tlk + chrX_7_3725001 chrX_3725001 RAL-239 1237 chrX 3881268 3881303 chrX 3881407 3881442 10 139 0.5 1.5 1.0 5.0 174 chrX 3881268 intron VhaAC39-1 + chrX 3881355 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_10_3880001 chrX_3880001 RAL-239 1238 chrX 3986869 3986889 chrX 3994502 3994522 412 5 7633 2.0 2.0 2.0 1.7 7653 chrX 3986869 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994522 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-239 1239 chrX 4165468 4165501 chrX 4165564 4165596 7 95 1.5 2.5 2.0 2.3 128 chrX 4165468 intron Fas2 - chrX 4165532 intron Fas2 - chrX 4165596 intron Fas2 - chrX_7_4165001 chrX_4165001 RAL-239 1240 chrX 4282176 4282182 chrX 4282493 4282494 4 315 4.0 4.5 4.2 0.8 318 chrX 4282176 intergenic not near genes chrX 4282335 intergenic not near genes chrX 4282494 intergenic not near genes chrX_4_4280001 chrX_4280001 RAL-239 1241 chrX 4282191 4282204 chrX 4282490 4282521 5 313 2.5 4.5 3.5 1.1 330 chrX 4282191 intergenic not near genes chrX 4282356 intergenic not near genes chrX 4282521 intergenic not near genes chrX_5_4280001 chrX_4280001 RAL-239 1242 chrX 4792384 4792406 chrX 4792813 4792838 jockey 4 432 1.0 2.0 1.5 1.6 454 chrX 4792384 intergenic not near genes chrX 4792611 intergenic not near genes chrX 4792838 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-239 1243 chrX 4827972 4827993 chrX 4835340 4835363 Stalker4 6 7370 2.5 2.0 2.2 1.9 7391 chrX 4827972 intergenic not near genes chrX 4831668 intergenic not near genes chrX 4835363 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-239 1244 chrX 4827995 4828000 chrX 4835338 4835371 Stalker4 6 7356 1.5 2.0 1.8 2.1 7376 chrX 4827995 intergenic not near genes chrX 4831683 intergenic not near genes chrX 4835371 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-239 1245 chrX 4885800 4885808 chrX 4885868 4885873 4 80 3.0 3.0 3.0 1.0 73 chrX 4885800 intron CG42594 + chrX 4885836 intron CG42594 + chrX 4885873 intron CG42594 + chrX_4_4885001 chrX_4885001 RAL-239 1246 chrX 4975594 4975611 chrX 4975771 4975788 4 177 0.5 1.5 1.0 2.0 194 chrX 4975594 intron CR44833 - chrX 4975691 intron CR44833 - chrX 4975788 intron CR44833 - chrX_4_4975001 chrX_4975001 RAL-239 1247 chrX 4990048 4990076 chrX 4997262 4997290 roo 4 7214 0.0 1.0 0.5 2.7 7242 chrX 4990048 intron CR44833 - chrX 4993669 intron CR44833 - chrX 4997290 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-239 1248 chrX 5444539 5444563 chrX 5445076 5445099 7 537 0.5 2.0 1.2 3.2 560 chrX 5444539 intergenic not near genes chrX 5444819 intergenic not near genes chrX 5445099 intergenic not near genes chrX_7_5440001 chrX_5440001 RAL-239 1249 chrX 5555374 5555393 chrX 5555496 5555517 4 119 2.0 4.0 3.0 1.0 143 chrX 5555374 intron Vsx2 - chrX 5555446 intron Vsx2 - chrX 5555517 intron Vsx2 - chrX_4_5555001 chrX_5555001 RAL-239 1250 chrX 5884168 5884190 chrX 5884409 5884431 pogo 4 241 2.0 1.0 1.5 1.6 263 chrX 5884168 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884431 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-239 1251 chrX 6003286 6003312 chrX 6003362 6003392 9 80 0.5 2.5 1.5 3.6 106 chrX 6003286 intron CR44498 + chrX 6003339 intron CR44498 + chrX 6003392 intron CR44498 + chrX_9_6000001 chrX_6000001 RAL-239 1252 chrX 6118705 6118722 chrX 6118787 6118804 6 81 1.0 5.0 3.0 1.5 99 chrX 6118705 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118804 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-239 1253 chrX 6335212 6335244 chrX 6337719 6337752 Tirant 5 2508 0.0 2.0 1.0 2.5 2540 chrX 6335212 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337752 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-239 1254 chrX 6562820 6562850 chrX 6571299 6571332 Tirant 16 8481 3.5 3.5 3.5 3.6 8512 chrX 6562820 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571332 intron CG34417 + chrX_16_6565001 chrX_6565001 RAL-239 1255 chrX 6727015 6727048 chrX 6727131 6727139 6 101 0.5 1.5 1.0 3.0 124 chrX 6727015 intron CG3168 - chrX 6727077 intron CG3168 - chrX 6727139 intron CG3168 - chrX_6_6725001 chrX_6725001 RAL-239 1256 chrX 6737518 6737550 chrX 6737600 6737631 7 82 2.0 2.5 2.2 2.2 113 chrX 6737518 intron CG3168 - chrX 6737574 intron CG3168 - chrX 6737631 intron CG3168 - chrX_7_6735001 chrX_6735001 RAL-239 1257 chrX 6792087 6792091 chrX 6792178 6792182 4 91 1.5 1.0 1.2 1.8 95 chrX 6792087 intron C3G - chrX 6792134 intron C3G - chrX 6792182 intron C3G - chrX_4_6790001 chrX_6790001 RAL-239 1258 chrX 6989503 6989524 chrX 6989590 6989611 4 87 1.0 1.0 1.0 2.0 108 chrX 6989503 intron ogre - chrX 6989557 intron ogre - chrX 6989611 intron ogre - chrX_4_6985001 chrX_6985001 RAL-239 1259 chrX 7023611 7023630 chrX 7031001 7031020 Tabor 6 7390 5.0 3.5 4.2 1.2 7409 chrX 7023611 intron CG12541 - chrX 7027316 intron CG12541 - chrX 7031020 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-239 1260 chrX 7702908 7702924 chrX 7703347 7703363 jockey 5 439 3.5 2.5 3.0 1.2 455 chrX 7702908 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703363 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-239 1261 chrX 7845728 7845752 chrX 7847218 7847243 hopper2 6 1491 2.5 1.0 1.8 2.1 1515 chrX 7845728 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847243 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-239 1262 chrX 8092290 8092322 chrX 8092375 8092407 4 83 1.0 1.0 1.0 2.0 117 chrX 8092290 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092407 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-239 1263 chrX 8214399 8214438 chrX 8214491 8214530 7 91 1.5 2.0 1.8 2.5 131 chrX 8214399 intron sdt + chrX 8214464 intron sdt + chrX 8214530 intron sdt + chrX_7_8210001 chrX_8210001 RAL-239 1264 chrX 8568977 8569001 chrX 8569061 8569084 5 83 2.0 5.0 3.5 1.1 107 chrX 8568977 3` UTR Trf4-1 + chrX 8569030 3` UTR Trf4-1 + chrX 8569084 3` UTR Trf4-1 + chrX_5_8565001 chrX_8565001 RAL-239 1265 chrX 8730453 8730465 chrX 8730514 8730541 5 73 0.0 4.0 2.0 1.7 88 chrX 8730453 intergenic not near genes chrX 8730497 intergenic not near genes chrX 8730541 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-239 1266 chrX 8922329 8922363 chrX 8922763 8922797 jockey 9 432 4.0 2.0 3.0 2.2 468 chrX 8922329 intron rdgA + chrX 8922563 intron rdgA + chrX 8922797 intron rdgA + chrX_9_8920001 chrX_8920001 RAL-239 1267 chrX 9147131 9147158 chrX 9147212 9147240 9 81 2.0 2.0 2.0 3.0 109 chrX 9147131 exon CG7065 + chrX 9147186 exon CG7065 + chrX 9147240 exon CG7065 + chrX_9_9145001 chrX_9145001 RAL-239 1268 chrX 9229908 9229934 chrX 9229987 9230013 6 80 1.5 3.0 2.2 1.9 105 chrX 9229908 intron CG12121 - chrX 9229960 intron CG12121 - chrX 9230013 intron CG12121 - chrX_6_9225001 chrX_9225001 RAL-239 1269 chrX 9337941 9337971 chrX 9338033 9338062 8 90 1.0 1.5 1.2 3.6 121 chrX 9337941 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338062 exon CG34449 - chrX_8_9335001 chrX_9335001 RAL-239 1270 chrX 9439266 9439289 chrX 9439750 9439773 4 484 0.5 0.5 0.5 2.7 507 chrX 9439266 intron mgl - chrX 9439520 intron mgl - chrX 9439773 intron mgl - chrX_4_9435001 chrX_9435001 RAL-239 1271 chrX 9508135 9508161 chrX 9509653 9509672 jockey 6 1516 1.5 2.5 2.0 2.0 1537 chrX 9508135 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509672 intron CG32700 - chrX_6_9505001 chrX_9505001 RAL-239 1272 chrX 9575805 9575819 chrX 9576114 9576135 mdg3 7 315 2.5 4.0 3.2 1.7 330 chrX 9575805 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576135 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-239 1273 chrX 9599172 9599192 chrX 9599250 9599269 8 73 3.5 4.0 3.8 1.7 97 chrX 9599172 intergenic not near genes chrX 9599220 intergenic not near genes chrX 9599269 intergenic not near genes chrX_8_9595001 chrX_9595001 RAL-239 1274 chrX 10035452 10035465 chrX 10035528 10035551 5 84 2.0 3.0 2.5 1.4 99 chrX 10035452 exon Cht6 + chrX 10035502 exon Cht6 + chrX 10035551 exon Cht6 + chrX_5_10035001 chrX_10035001 RAL-239 1275 chrX 10361712 10361745 chrX 10361809 10361842 5 97 0.5 0.5 0.5 3.3 130 chrX 10361712 intron l(1)G0289 - chrX 10361777 intron l(1)G0289 - chrX 10361842 intron l(1)G0289 - chrX_5_10360001 chrX_10360001 RAL-239 1276 chrX 10550853 10550886 chrX 10552320 10552353 hobo 8 1467 3.0 1.0 2.0 2.7 1500 chrX 10550853 intron spri - chrX 10551603 intron spri - chrX 10552353 intron spri - chrX_8_10550001 chrX_10550001 RAL-239 1277 chrX 11081687 11081699 chrX 11082610 11082626 4 926 1.0 0.5 0.8 2.2 939 chrX 11081687 intron sev - chrX 11082156 intron sev - chrX 11082626 intron sev - chrX_4_11080001 chrX_11080001 RAL-239 1278 chrX 11205293 11205324 chrX 11205369 11205400 5 76 0.5 0.5 0.5 3.3 107 chrX 11205293 intergenic not near genes chrX 11205346 intergenic not near genes chrX 11205400 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-239 1279 chrX 11379765 11379774 chrX 11379910 11379919 4 145 3.0 1.0 2.0 1.3 154 chrX 11379765 intron dlg1 + chrX 11379842 intron dlg1 + chrX 11379919 intron dlg1 + chrX_4_11375001 chrX_11375001 RAL-239 1280 chrX 11399870 11399898 chrX 11400024 11400051 8 153 22.0 18.0 20.0 0.4 181 chrX 11399870 intron dlg1 + chrX 11399960 intron dlg1 + chrX 11400051 intron dlg1 + chrX_8_11395001 chrX_11395001 RAL-239 1281 chrX 11633421 11633447 chrX 11640475 11640501 297 6 7054 1.5 1.0 1.2 2.7 7080 chrX 11633421 intron Ptp10D + chrX 11636961 intron Ptp10D + chrX 11640501 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-239 1282 chrX 11922366 11922376 chrX 11922498 11922509 6 133 1.0 2.5 1.8 2.1 143 chrX 11922366 exon Sclp - chrX 11922438 intron Sclp - chrX 11922509 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-239 1283 chrX 12069057 12069069 chrX 12069142 12069150 5 84 2.5 2.0 2.2 1.6 93 chrX 12069057 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069104 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069150 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_5_12065001 chrX_12065001 RAL-239 1284 chrX 12094034 12094064 chrX 12094126 12094156 6 89 1.5 1.5 1.5 2.4 122 chrX 12094034 intron,intron CR43960 +,Ten-a + chrX 12094095 intron,intron CR43960 +,Ten-a + chrX 12094156 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-239 1285 chrX 12168136 12168167 chrX 12173577 12173606 I-element 5 5441 1.5 2.0 1.8 1.8 5470 chrX 12168136 intron Ten-a + chrX 12170871 intron Ten-a + chrX 12173606 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-239 1286 chrX 12381883 12381896 chrX 12385783 12385797 flea 4 3901 0.5 2.0 1.2 1.8 3914 chrX 12381883 intergenic not near genes chrX 12383840 intergenic not near genes chrX 12385797 intergenic not near genes chrX_4_12380001 chrX_12380001 RAL-239 1287 chrX 12971697 12971719 chrX 12971768 12971774 6 69 2.5 3.5 3.0 1.5 77 chrX 12971697 intron,exon CR43636 -,CG15721 + chrX 12971736 intron,exon CR43636 -,CG15721 + chrX 12971774 intron,exon CR43636 -,CG15721 + chrX_6_12970001 chrX_12970001 RAL-239 1288 chrX 13577752 13577770 chrX 13578014 13578033 5 259 3.0 0.0 1.5 2.0 281 chrX 13577752 intron Tango13 + chrX 13577892 intron Tango13 + chrX 13578033 intron Tango13 + chrX_5_13575001 chrX_13575001 RAL-239 1289 chrX 13975874 13975908 chrX 13975951 13975985 8 77 0.0 2.5 1.2 3.6 111 chrX 13975874 intron mamo - chrX 13975930 intron mamo - chrX 13975985 intron mamo - chrX_8_13975001 chrX_13975001 RAL-239 1290 chrX 14105021 14105056 chrX 14114172 14114207 roo 11 9144 1.5 3.0 2.2 3.4 9186 chrX 14105021 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114207 5` UTR CR44657 + chrX_11_14105001 chrX_14105001 RAL-239 1291 chrX 14131487 14131521 chrX 14131568 14131602 11 79 2.0 5.5 3.8 2.3 115 chrX 14131487 intergenic not near genes chrX 14131544 intergenic not near genes chrX 14131602 intergenic not near genes chrX_11_14130001 chrX_14130001 RAL-239 1292 chrX 14296456 14296481 chrX 14296532 14296552 7 75 2.0 0.5 1.2 3.2 96 chrX 14296456 intergenic not near genes chrX 14296504 intergenic not near genes chrX 14296552 intergenic not near genes chrX_7_14295001 chrX_14295001 RAL-239 1293 chrX 14333294 14333306 chrX 14333369 14333386 4 78 1.5 1.0 1.2 1.8 92 chrX 14333294 intron dpr8 + chrX 14333340 intron dpr8 + chrX 14333386 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-239 1294 chrX 14579105 14579137 chrX 14579187 14579219 9 81 2.0 0.5 1.2 4.1 114 chrX 14579105 intergenic not near genes chrX 14579162 intergenic not near genes chrX 14579219 intergenic not near genes chrX_9_14575001 chrX_14575001 RAL-239 1295 chrX 14636462 14636492 chrX 14641901 14641933 I-element 5 5441 2.0 1.0 1.5 2.0 5471 chrX 14636462 intron NetA - chrX 14639198 intron NetA - chrX 14641933 intron NetA - chrX_5_14635001 chrX_14635001 RAL-239 1296 chrX 14778040 14778061 chrX 14782837 14782858 Doc 4 4797 0.5 1.5 1.0 2.0 4818 chrX 14778040 intergenic CG5347 + chrX 14780449 intergenic not near genes chrX 14782858 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-239 1297 chrX 15678051 15678068 chrX 15678127 15678140 5 75 3.0 2.5 2.8 1.3 89 chrX 15678051 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678140 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-239 1298 chrX 15818780 15818807 chrX 15818854 15818882 4 74 1.0 4.5 2.8 1.1 102 chrX 15818780 intron sd + chrX 15818831 intron sd + chrX 15818882 intron sd + chrX_4_15815001 chrX_15815001 RAL-239 1299 chrX 16329435 16329446 chrX 16329515 16329529 6 82 0.0 5.0 2.5 1.7 94 chrX 16329435 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329529 exon CG9919 - chrX_6_16325001 chrX_16325001 RAL-239 1300 chrX 16492654 16492674 chrX 16498231 16498251 mdg3 6 5577 0.5 2.5 1.5 2.4 5597 chrX 16492654 intron para - chrX 16495452 intron para - chrX 16498251 intron para - chrX_6_16495001 chrX_16495001 RAL-239 1301 chrX 16623482 16623503 chrX 16623567 16623588 6 85 3.5 0.0 1.8 2.1 106 chrX 16623482 intergenic not near genes chrX 16623535 intergenic Rok - chrX 16623588 intergenic Rok - chrX_6_16620001 chrX_16620001 RAL-239 1302 chrX 16951346 16951356 chrX 16951405 16951425 6 69 2.5 6.5 4.5 1.1 79 chrX 16951346 exon RhoGAP15B + chrX 16951386 exon RhoGAP15B + chrX 16951425 exon RhoGAP15B + chrX_6_16950001 chrX_16950001 RAL-239 1303 chrX 17011967 17011993 chrX 17012049 17012071 4 81 1.0 2.5 1.8 1.4 104 chrX 17011967 intron CG45002 - chrX 17012019 intron CG45002 - chrX 17012071 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-239 1304 chrX 17263942 17263974 chrX 17264031 17264060 7 87 1.5 4.0 2.8 1.8 118 chrX 17263942 intron f + chrX 17264001 intron f + chrX 17264060 intron f + chrX_7_17260001 chrX_17260001 RAL-239 1305 chrX 17403858 17403884 chrX 17403948 17403975 4 91 1.5 1.5 1.5 1.6 117 chrX 17403858 intergenic not near genes chrX 17403916 intergenic not near genes chrX 17403975 intergenic not near genes chrX_4_17400001 chrX_17400001 RAL-239 1306 chrX 17607262 17607286 chrX 17607383 17607408 6 121 2.0 1.0 1.5 2.4 146 chrX 17607262 intergenic X11L + chrX 17607335 intergenic X11L + chrX 17607408 intergenic not near genes chrX_6_17605001 chrX_17605001 RAL-239 1307 chrX 17617645 17617674 chrX 17617740 17617764 5 94 2.5 0.0 1.2 2.3 119 chrX 17617645 intergenic not near genes chrX 17617704 intergenic not near genes chrX 17617764 intergenic not near genes chrX_5_17615001 chrX_17615001 RAL-239 1308 chrX 17716590 17716604 chrX 17716677 17716691 4 86 2.5 2.0 2.2 1.2 101 chrX 17716590 intron CG42684 + chrX 17716640 intron CG42684 + chrX 17716691 intron CG42684 + chrX_4_17715001 chrX_17715001 RAL-239 1309 chrX 17740379 17740404 chrX 17740455 17740462 4 70 2.5 5.0 3.8 0.8 83 chrX 17740379 intron CG42684 + chrX 17740420 intron CG42684 + chrX 17740462 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-239 1310 chrX 17978064 17978089 chrX 17978149 17978173 4 84 1.5 1.0 1.2 1.8 109 chrX 17978064 intron Sh - chrX 17978118 intron Sh - chrX 17978173 intron Sh - chrX_4_17975001 chrX_17975001 RAL-239 1311 chrX 18122824 18122839 chrX 18122899 18122914 5 76 4.0 0.5 2.2 1.6 90 chrX 18122824 5` UTR CR45606 + chrX 18122869 5` UTR CR45606 + chrX 18122914 5` UTR CR45606 + chrX_5_18120001 chrX_18120001 RAL-239 1312 chrX 18427381 18427403 chrX 18427792 18427814 6 411 2.0 0.5 1.2 2.7 433 chrX 18427381 intergenic CG42323 + chrX 18427598 intergenic not near genes chrX 18427814 intergenic not near genes chrX_6_18425001 chrX_18425001 RAL-239 1313 chrX 18429503 18429510 chrX 18434814 18434820 Transpac 4 5311 1.0 2.0 1.5 1.6 5317 chrX 18429503 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434820 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-239 1314 chrX 18452318 18452350 chrX 18452400 18452402 8 76 5.0 3.0 4.0 1.6 84 chrX 18452318 intron CG32547 - chrX 18452360 intron CG32547 - chrX 18452402 intron CG32547 - chrX_8_18450001 chrX_18450001 RAL-239 1315 chrX 18558776 18558803 chrX 18558858 18558885 7 81 1.0 1.5 1.2 3.2 109 chrX 18558776 intron Bx + chrX 18558830 intron Bx + chrX 18558885 intron Bx + chrX_7_18555001 chrX_18555001 RAL-239 1316 chrX 18645016 18645045 chrX 18645114 18645143 7 98 1.0 1.5 1.2 3.2 127 chrX 18645016 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645143 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-239 1317 chrX 19014357 19014392 chrX 19014436 19014470 4 78 1.0 1.0 1.0 2.0 113 chrX 19014357 intron CG43759 + chrX 19014414 intron CG43759 + chrX 19014470 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-239 1318 chrX 19056071 19056092 chrX 19056174 19056195 5 103 2.0 0.5 1.2 2.3 124 chrX 19056071 intergenic not near genes chrX 19056133 intergenic not near genes chrX 19056195 intergenic not near genes chrX_5_19055001 chrX_19055001 RAL-239 1319 chrX 19060416 19060439 chrX 19065200 19065223 Doc 4 4784 0.5 1.5 1.0 2.0 4807 chrX 19060416 intron CG14190 + chrX 19062820 intron CG14190 + chrX 19065223 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-239 1320 chrX 19084106 19084110 chrX 19084226 19084230 5 120 0.5 2.0 1.2 2.3 124 chrX 19084106 intergenic CR45503 + chrX 19084168 intergenic CR45503 + chrX 19084230 intergenic CR45503 + chrX_5_19080001 chrX_19080001 RAL-239 1321 chrX 19125700 19125719 chrX 19125829 19125846 4 128 1.5 3.0 2.2 1.2 146 chrX 19125700 intron tgy - chrX 19125773 intron tgy - chrX 19125846 intron tgy - chrX_4_19125001 chrX_19125001 RAL-239 1322 chrX 13057298 13057300 chrX 19242813 19242814 7 6185514 2.0 1.5 1.8 2.5 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_7_16150001 chrX_16150001 RAL-239 1323 chrX 19472122 19472157 chrX 19472688 19472727 jockey 7 563 1.5 0.5 1.0 3.5 605 chrX 19472122 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472727 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-239 1324 chrX 19576560 19576582 chrX 19576638 19576660 4 78 1.5 1.5 1.5 1.6 100 chrX 19576560 intron Tao - chrX 19576610 intron Tao - chrX 19576660 intron Tao - chrX_4_19575001 chrX_19575001 RAL-239 1325 chrX 19582641 19582661 chrX 19582956 19582974 9 313 0.5 3.0 1.8 3.2 333 chrX 19582641 intergenic not near genes chrX 19582808 intergenic not near genes chrX 19582974 intergenic not near genes chrX_9_19580001 chrX_19580001 RAL-239 1326 chrX 19593953 19593977 chrX 19594038 19594062 10 84 1.0 7.0 4.0 2.0 109 chrX 19593953 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594062 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-239 1327 chrX 19825060 19825087 chrX 19825303 19825330 7 242 2.5 2.5 2.5 2.0 270 chrX 19825060 intergenic not near genes chrX 19825195 intergenic not near genes chrX 19825330 intergenic not near genes chrX_7_19825001 chrX_19825001 RAL-239 1328 chrX 19884090 19884121 chrX 19884165 19884176 11 72 2.0 3.0 2.5 3.1 86 chrX 19884090 intron Hers + chrX 19884133 intron Hers + chrX 19884176 intron Hers + chrX_11_19880001 chrX_19880001 RAL-239 1329 chrX 19976985 19976989 chrX 19977060 19977068 6 78 3.0 2.0 2.5 1.7 83 chrX 19976985 intergenic not near genes chrX 19977026 intergenic not near genes chrX 19977068 intergenic not near genes chrX_6_19975001 chrX_19975001 RAL-239 1330 chrX 19992415 19992436 chrX 19992491 19992512 6 72 5.0 6.5 5.8 0.9 97 chrX 19992415 intergenic not near genes chrX 19992464 intergenic not near genes chrX 19992512 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-239 1331 chrX 20150383 20150393 chrX 20150471 20150482 5 89 4.5 4.0 4.2 1.0 99 chrX 20150383 intron CG9572 + chrX 20150432 intron CG9572 + chrX 20150482 intron CG9572 + chrX_5_20150001 chrX_20150001 RAL-239 1332 chrX 20284017 20284048 chrX 20284107 20284113 7 74 1.5 4.0 2.8 1.8 96 chrX 20284017 intergenic not near genes chrX 20284065 intergenic not near genes chrX 20284113 intergenic not near genes chrX_7_20280001 chrX_20280001 RAL-239 1333 chrX 20312884 20312909 chrX 20312962 20312987 6 78 1.0 0.5 0.8 3.3 103 chrX 20312884 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20312987 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-239 1334 chrX 20377326 20377349 chrX 20378793 20378814 hobo 10 1466 4.5 4.5 4.5 1.8 1488 chrX 20377326 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378814 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-239 1335 chrX 20426180 20426187 chrX 20428378 20428403 4 2203 25.5 25.5 25.5 0.2 2223 chrX 20426180 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428403 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-239 1336 chrX 20464115 20464118 chrX 20467696 20467716 7 3583 22.0 21.0 21.5 0.3 3601 chrX 20464115 exon CG32506 + chrX 20465916 3` UTR CG32506 + chrX 20467716 5` UTR GstT3 + chrX_7_20465001 chrX_20465001 RAL-239 1337 chrX 20504125 20504158 chrX 20505646 20505667 transib2 9 1519 0.0 3.5 1.8 3.2 1542 chrX 20504125 intron RhoGAP19D - chrX 20504896 intron RhoGAP19D - chrX 20505667 intron RhoGAP19D - chrX_9_20500001 chrX_20500001 RAL-239 1338 chrX 20583731 20583745 chrX 20583902 20583916 4 171 2.0 0.0 1.0 2.0 185 chrX 20583731 intergenic not near genes chrX 20583824 intergenic not near genes chrX 20583916 intergenic not near genes chrX_4_20580001 chrX_20580001 RAL-239 1339 chrX 20940724 20940754 chrX 20942193 20942223 hobo 9 1469 3.0 1.5 2.2 2.8 1499 chrX 20940724 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942223 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-239 1340 chrX 21086132 21086155 chrX 21087161 21087184 jockey 6 1028 2.0 1.5 1.8 2.1 1052 chrX 21086132 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087184 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-239 1341 chrX 21253283 21253304 chrX 21253359 21253380 6 76 6.5 6.0 6.2 0.8 97 chrX 21253283 intron CG32521 - chrX 21253332 intron CG32521 - chrX 21253380 intron CG32521 - chrX_6_21250001 chrX_21250001 RAL-239 1342 chrX 21264732 21264748 chrX 21264808 21264824 4 76 1.5 2.0 1.8 1.4 92 chrX 21264732 intron CG32521 - chrX 21264778 intron CG32521 - chrX 21264824 intron CG32521 - chrX_4_21260001 chrX_21260001 RAL-239 1343 chrX 21419719 21419736 chrX 21419808 21419821 4 88 2.0 4.0 3.0 1.0 102 chrX 21419719 intergenic not near genes chrX 21419770 intergenic not near genes chrX 21419821 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-239 1344 chrX 21575544 21575553 chrX 21575623 21575632 4 79 1.5 2.5 2.0 1.3 88 chrX 21575544 intergenic not near genes chrX 21575588 intergenic not near genes chrX 21575632 intergenic not near genes chrX_4_21575001 chrX_21575001 RAL-239 1345 chrX 22522646 22522659 chrX 22525466 22525477 NOF 4 2819 0.5 0.0 0.2 3.3 2831 chrX 22522646 intron CG17600 + chrX 22524062 intron CG17600 + chrX 22525477 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-239 1346 chrX 22697496 22697523 chrX 22701790 22701820 Juan 6 4296 3.0 1.5 2.2 1.9 4324 chrX 22697496 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701820 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-239 1347 chrX 22771513 22771533 chrX 22774799 22774818 297 5 3289 1.5 3.0 2.2 1.6 3305 chrX 22771513 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774818 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-239 1348 chrX 22870887 22870901 chrX 22870959 22870992 4 85 1.5 3.0 2.2 1.2 105 chrX 22870887 intron,3` UTR CG42346 +,CR43656 - chrX 22870940 intron,3` UTR CG42346 +,CR43656 - chrX 22870992 intron,3` UTR CG42346 +,CR43656 - chrX_4_22870001 chrX_22870001 RAL-239 1349 chrX 22895733 22895758 chrX 22895844 22895876 6 115 3.0 1.5 2.2 1.9 143 chrX 22895733 intergenic not near genes chrX 22895804 intergenic not near genes chrX 22895876 intergenic not near genes chrX_6_22895001 chrX_22895001 RAL-239 1350 chrX 22922524 22922543 chrX 22922604 22922623 5 80 1.0 2.0 1.5 2.0 99 chrX 22922524 intergenic not near genes chrX 22922574 intergenic not near genes chrX 22922623 intergenic not near genes chrX_5_22920001 chrX_22920001 RAL-239 1351 chrX 22996323 22996340 chrX 23003555 23003572 roo 5 7231 0.0 2.0 1.0 2.5 7249 chrX 22996323 intron,intron stnA -,stnB - chrX 22999948 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 RAL-239 1352 chrY 975800 975819 chrY 975877 975899 6 80 121.5 144.5 133.0 0.0 99 chrY 975800 intergenic not near genes chrY 975850 intergenic not near genes chrY 975899 intergenic not near genes chrY_6_975001 chrY_975001 RAL-239