SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 590620 590645 chr2L 590721 590725 7 98 6.5 4.0 5.2 1.1 105 chr2L 590620 intron Gsc - chr2L 590672 intron Gsc - chr2L 590725 intron Gsc - chr2L_7_590001 chr2L_590001 RAL-237 2 chr2L 750014 750046 chr2L 750137 750158 5 121 6.0 4.0 5.0 0.8 144 chr2L 750014 5` UTR GABA-B-R3 + chr2L 750086 5` UTR GABA-B-R3 + chr2L 750158 5` UTR GABA-B-R3 + chr2L_5_750001 chr2L_750001 RAL-237 3 chr2L 848612 848643 chr2L 848696 848727 7 81 7.5 6.5 7.0 0.9 115 chr2L 848612 intron drongo - chr2L 848670 intron drongo - chr2L 848727 intron drongo - chr2L_7_845001 chr2L_845001 RAL-237 4 chr2L 976893 976903 chr2L 984529 984539 roo 5 7636 1.5 1.0 1.2 2.3 7646 chr2L 976893 intergenic not near genes chr2L 980716 intergenic not near genes chr2L 984539 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-237 5 chr2L 1035561 1035593 chr2L 1035637 1035669 8 76 10.0 8.5 9.2 0.8 108 chr2L 1035561 intron IA-2 - chr2L 1035615 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_8_1035001 chr2L_1035001 RAL-237 6 chr2L 1127180 1127191 chr2L 1127259 1127270 4 78 2.5 6.5 4.5 0.7 90 chr2L 1127180 intron Pino - chr2L 1127225 intron Pino - chr2L 1127270 intron Pino - chr2L_4_1125001 chr2L_1125001 RAL-237 7 chr2L 1156860 1156872 chr2L 1156965 1156975 4 104 1.0 2.0 1.5 1.6 115 chr2L 1156860 intron capt - chr2L 1156918 intron capt - chr2L 1156975 intron capt - chr2L_4_1155001 chr2L_1155001 RAL-237 8 chr2L 1164251 1164282 chr2L 1164337 1164368 5 86 5.0 6.5 5.8 0.7 117 chr2L 1164251 intergenic IntS14 +,CG5080 - chr2L 1164310 intergenic IntS14 +,CG5080 - chr2L 1164368 intergenic IntS14 +,CG5080 - chr2L_5_1160001 chr2L_1160001 RAL-237 9 chr2L 1178698 1178707 chr2L 1178782 1178790 4 83 5.0 2.0 3.5 0.9 92 chr2L 1178698 intron CG4896 + chr2L 1178744 intron CG4896 + chr2L 1178790 intron CG4896 + chr2L_4_1175001 chr2L_1175001 RAL-237 10 chr2L 1220127 1220162 chr2L 1227593 1227628 blood 4 7466 0.5 0.5 0.5 2.7 7501 chr2L 1220127 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-237 11 chr2L 1270118 1270138 chr2L 1270215 1270235 6 94 6.5 4.0 5.2 1.0 117 chr2L 1270118 intron robo3 + chr2L 1270176 intron robo3 + chr2L 1270235 intron robo3 + chr2L_6_1270001 chr2L_1270001 RAL-237 12 chr2L 1459850 1459875 chr2L 1459954 1459974 8 102 17.0 15.0 16.0 0.5 124 chr2L 1459850 intergenic not near genes chr2L 1459912 intergenic not near genes chr2L 1459974 intergenic not near genes chr2L_8_1455001 chr2L_1455001 RAL-237 13 chr2L 1615397 1615414 chr2L 1615478 1615496 8 82 3.0 9.5 6.2 1.1 99 chr2L 1615397 intergenic not near genes chr2L 1615446 intergenic not near genes chr2L 1615496 intergenic not near genes chr2L_8_1615001 chr2L_1615001 RAL-237 14 chr2L 1711357 1711383 chr2L 1711680 1711707 mdg3 10 322 3.0 8.0 5.5 1.5 350 chr2L 1711357 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_10_1710001 chr2L_1710001 RAL-237 15 chr2L 1883437 1883444 chr2L 1884015 1884024 4 579 0.0 11.0 5.5 0.6 587 chr2L 1883437 intron CG15358 - chr2L 1883730 intron CG15358 - chr2L 1884024 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-237 16 chr2L 1999567 1999574 chr2L 1999731 1999737 4 163 9.5 10.0 9.8 0.4 170 chr2L 1999567 intron CG33543 - chr2L 1999652 intron CG33543 - chr2L 1999737 intron CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-237 17 chr2L 2093029 2093049 chr2L 2093281 2093297 5 252 9.0 4.0 6.5 0.7 268 chr2L 2093029 intron dpr3 - chr2L 2093163 intron dpr3 - chr2L 2093297 intron dpr3 - chr2L_5_2090001 chr2L_2090001 RAL-237 18 chr2L 2100376 2100401 chr2L 2109526 2109546 roo 10 9150 2.0 1.0 1.5 4.0 9170 chr2L 2100376 intron dpr3 - chr2L 2104961 intron dpr3 - chr2L 2109546 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-237 19 chr2L 2179557 2179584 chr2L 2179789 2179816 4 232 11.5 10.0 10.8 0.3 259 chr2L 2179557 intergenic not near genes chr2L 2179686 intergenic not near genes chr2L 2179816 intergenic not near genes chr2L_4_2175001 chr2L_2175001 RAL-237 20 chr2L 2311074 2311091 chr2L 2311168 2311186 5 95 2.0 0.0 1.0 2.5 112 chr2L 2311074 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311186 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-237 21 chr2L 2552737 2552773 chr2L 2552817 2552853 7 80 5.5 6.5 6.0 1.0 116 chr2L 2552737 exon CG3515 - chr2L 2552795 5` UTR CG3515 - chr2L 2552853 intergenic CG3515 - chr2L_7_2550001 chr2L_2550001 RAL-237 22 chr2L 2667640 2667654 chr2L 2667718 2667733 5 78 1.0 1.5 1.2 2.3 93 chr2L 2667640 intergenic not near genes chr2L 2667686 intergenic not near genes chr2L 2667733 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-237 23 chr2L 3192210 3192242 chr2L 3192321 3192349 7 108 2.0 6.5 4.2 1.3 139 chr2L 3192210 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192349 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-237 24 chr2L 3251502 3251517 chr2L 3259066 3259082 springer 4 7565 1.5 3.5 2.5 1.1 7580 chr2L 3251502 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259082 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-237 25 chr2L 3367011 3367042 chr2L 3367161 3367192 13 149 7.5 10.5 9.0 1.3 181 chr2L 3367011 intron CG34394 - chr2L 3367102 intron CG34394 - chr2L 3367192 intron CG34394 - chr2L_13_3365001 chr2L_3365001 RAL-237 26 chr2L 3430212 3430237 chr2L 3430293 3430319 5 82 7.0 5.0 6.0 0.7 107 chr2L 3430212 intergenic not near genes chr2L 3430266 intergenic not near genes chr2L 3430319 intergenic not near genes chr2L_5_3430001 chr2L_3430001 RAL-237 27 chr2L 3450957 3450973 chr2L 3452717 3452749 4 1764 45.5 27.5 36.5 0.1 1792 chr2L 3450957 exon Snx1 + chr2L 3451853 3` UTR Snx1 + chr2L 3452749 exon CG12795 + chr2L_4_3450001 chr2L_3450001 RAL-237 28 chr2L 3523035 3523054 chr2L 3523148 3523161 8 111 0.5 0.5 0.5 5.3 126 chr2L 3523035 exon Sr-CIV - chr2L 3523098 intron Sr-CIV - chr2L 3523161 exon Sr-CIV - chr2L_8_3520001 chr2L_3520001 RAL-237 29 chr2L 3613902 3613913 chr2L 3614015 3614027 4 113 2.0 1.5 1.8 1.4 125 chr2L 3613902 intergenic not near genes chr2L 3613964 intergenic not near genes chr2L 3614027 intergenic not near genes chr2L_4_3610001 chr2L_3610001 RAL-237 30 chr2L 3634101 3634120 chr2L 3634183 3634202 4 82 0.5 1.0 0.8 2.2 101 chr2L 3634101 intron for - chr2L 3634152 intron for - chr2L 3634202 intron for - chr2L_4_3630001 chr2L_3630001 RAL-237 31 chr2L 3686371 3686385 chr2L 3686461 3686475 4 88 2.5 7.0 4.8 0.7 104 chr2L 3686371 intron CG34340 + chr2L 3686423 intron CG34340 + chr2L 3686475 intron CG34340 + chr2L_4_3685001 chr2L_3685001 RAL-237 32 chr2L 3690635 3690659 chr2L 3690739 3690763 5 104 6.0 4.5 5.2 0.8 128 chr2L 3690635 intron CG34340 + chr2L 3690699 intron CG34340 + chr2L 3690763 intron CG34340 + chr2L_5_3690001 chr2L_3690001 RAL-237 33 chr2L 3891896 3891924 chr2L 3891981 3892008 4 84 9.5 6.5 8.0 0.4 112 chr2L 3891896 intron capu - chr2L 3891952 intron capu - chr2L 3892008 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-237 34 chr2L 4008283 4008302 chr2L 4008366 4008386 6 84 2.5 5.5 4.0 1.2 103 chr2L 4008283 intergenic CG43773 +,CG43774 + chr2L 4008334 intergenic CG43774 +,CG43773 + chr2L 4008386 intergenic CG43774 +,CG43773 + chr2L_6_4005001 chr2L_4005001 RAL-237 35 chr2L 4150632 4150658 chr2L 4150709 4150720 4 75 3.0 1.5 2.2 1.2 88 chr2L 4150632 exon CG2955 + chr2L 4150676 exon CG2955 + chr2L 4150720 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-237 36 chr2L 4166386 4166407 chr2L 4166469 4166490 6 83 1.0 2.0 1.5 2.4 104 chr2L 4166386 intergenic Or24a - chr2L 4166438 intergenic Or24a - chr2L 4166490 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-237 37 chr2L 4275090 4275104 chr2L 4275174 4275188 4 84 5.0 6.0 5.5 0.6 98 chr2L 4275090 intergenic not near genes chr2L 4275139 intergenic not near genes chr2L 4275188 intergenic not near genes chr2L_4_4275001 chr2L_4275001 RAL-237 38 chr2L 4601710 4601729 chr2L 4609150 4609170 mdg1 5 7441 2.0 1.5 1.8 1.8 7460 chr2L 4601710 intron dp - chr2L 4605440 intron dp - chr2L 4609170 intron dp - chr2L_5_4605001 chr2L_4605001 RAL-237 39 chr2L 4841081 4841100 chr2L 4841148 4841175 4 73 10.0 9.5 9.8 0.4 94 chr2L 4841081 intron CG12194 + chr2L 4841128 intron CG12194 + chr2L 4841175 exon CG12194 + chr2L_4_4840001 chr2L_4840001 RAL-237 40 chr2L 5038013 5038028 chr2L 5038096 5038110 4 82 8.0 17.5 12.8 0.3 97 chr2L 5038013 5` UTR,5` UTR CG14042 +,SP555 + chr2L 5038062 5` UTR,5` UTR CG14042 +,SP555 + chr2L 5038110 5` UTR,5` UTR CG14042 +,SP555 + chr2L_4_5035001 chr2L_5035001 RAL-237 41 chr2L 5242909 5242937 chr2L 16217660 16217660 12 10974726 11.0 13.0 12.0 0.9 10974751 chr2L 5242909 intron tkv - chr2L 10730284 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_12_10730001 chr2L_10730001 RAL-237 42 chr2L 5582328 5582347 chr2L 5582418 5582436 4 88 2.0 4.5 3.2 1.0 108 chr2L 5582328 intergenic not near genes chr2L 5582382 intergenic not near genes chr2L 5582436 intergenic not near genes chr2L_4_5580001 chr2L_5580001 RAL-237 43 chr2L 5897600 5897628 chr2L 5897680 5897710 5 78 2.5 2.5 2.5 1.4 110 chr2L 5897600 intergenic not near genes chr2L 5897655 intergenic not near genes chr2L 5897710 intergenic not near genes chr2L_5_5895001 chr2L_5895001 RAL-237 44 chr2L 5945176 5945184 chr2L 5945250 5945281 5 89 5.5 6.0 5.8 0.7 105 chr2L 5945176 intron Gpdh + chr2L 5945228 intron Gpdh + chr2L 5945281 intron Gpdh + chr2L_5_5945001 chr2L_5945001 RAL-237 45 chr2L 5976981 5977000 chr2L 5977077 5977096 6 96 12.0 13.0 12.5 0.4 115 chr2L 5976981 intron chic - chr2L 5977038 intron chic - chr2L 5977096 intron chic - chr2L_6_5975001 chr2L_5975001 RAL-237 46 chr2L 5989048 5989060 chr2L 5989123 5989136 4 78 3.0 1.0 2.0 1.3 88 chr2L 5989048 intergenic ifc +,lid - chr2L 5989092 intergenic ifc +,lid - chr2L 5989136 intergenic lid -,ifc + chr2L_4_5985001 chr2L_5985001 RAL-237 47 chr2L 5993341 5993360 chr2L 5993431 5993451 8 90 4.5 6.5 5.5 1.2 110 chr2L 5993341 exon lid - chr2L 5993396 intron lid - chr2L 5993451 intron lid - chr2L_8_5990001 chr2L_5990001 RAL-237 48 chr2L 6067577 6067595 chr2L 6067666 6067685 5 89 10.5 11.5 11.0 0.4 108 chr2L 6067577 3` UTR CG9147 + chr2L 6067631 3` UTR CG9147 + chr2L 6067685 3` UTR CG9150 - chr2L_5_6065001 chr2L_6065001 RAL-237 49 chr2L 6361199 6361217 chr2L 6361285 6361303 4 86 6.5 2.5 4.5 0.7 104 chr2L 6361199 5` UTR CR44778 + chr2L 6361251 5` UTR CR44778 + chr2L 6361303 5` UTR CR44778 + chr2L_4_6360001 chr2L_6360001 RAL-237 50 chr2L 6363151 6363181 chr2L 6366077 6366105 Burdock 5 2925 1.0 3.5 2.2 1.6 2954 chr2L 6363151 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366105 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-237 51 chr2L 6371684 6371711 chr2L 6371761 6371789 9 77 14.0 11.5 12.8 0.7 105 chr2L 6371684 intergenic not near genes chr2L 6371736 intergenic not near genes chr2L 6371789 intergenic not near genes chr2L_9_6370001 chr2L_6370001 RAL-237 52 chr2L 6426853 6426876 chr2L 6445113 6445136 roo 7 18260 4.5 2.5 3.5 1.6 18283 chr2L 6426853 3` UTR CG9527 - chr2L 6435994 intron CG9527 - chr2L 6445136 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-237 53 chr2L 6471725 6471748 chr2L 6471807 6471830 5 82 10.5 7.0 8.8 0.5 105 chr2L 6471725 intron mmy - chr2L 6471778 intron mmy - chr2L 6471830 intron mmy - chr2L_5_6470001 chr2L_6470001 RAL-237 54 chr2L 6655526 6655544 chr2L 6655887 6655906 11 361 2.5 4.0 3.2 2.6 380 chr2L 6655526 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655906 exon CG31633 - chr2L_11_6655001 chr2L_6655001 RAL-237 55 chr2L 6740744 6740762 chr2L 6740831 6740848 5 86 0.0 10.0 5.0 0.8 104 chr2L 6740744 intergenic not near genes chr2L 6740796 intergenic not near genes chr2L 6740848 intergenic not near genes chr2L_5_6740001 chr2L_6740001 RAL-237 56 chr2L 7179105 7179139 chr2L 7179189 7179223 5 83 5.0 8.0 6.5 0.7 118 chr2L 7179105 intergenic not near genes chr2L 7179164 intergenic not near genes chr2L 7179223 intergenic not near genes chr2L_5_7175001 chr2L_7175001 RAL-237 57 chr2L 7228439 7228467 chr2L 7228521 7228549 5 82 2.0 3.0 2.5 1.4 110 chr2L 7228439 intron,exon Ndae1 -,CG43799 + chr2L 7228494 intron,exon Ndae1 -,CG43799 + chr2L 7228549 intron,exon Ndae1 -,CG43799 + chr2L_5_7225001 chr2L_7225001 RAL-237 58 chr2L 7343326 7343358 chr2L 7350442 7350460 roo 7 7114 5.0 2.5 3.8 1.5 7134 chr2L 7343326 intron Wnt6 + chr2L 7346893 intron Wnt6 + chr2L 7350460 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-237 59 chr2L 7502740 7502754 chr2L 7502816 7502830 5 76 13.5 9.5 11.5 0.4 90 chr2L 7502740 intron RapGAP1 - chr2L 7502785 intron RapGAP1 - chr2L 7502830 intron RapGAP1 - chr2L_5_7500001 chr2L_7500001 RAL-237 60 chr2L 7858934 7858944 chr2L 7859023 7859034 4 89 10.5 6.0 8.2 0.4 100 chr2L 7858934 3` UTR,intron lectin-28C +,TwdlE - chr2L 7858984 3` UTR,intron lectin-28C +,TwdlE - chr2L 7859034 3` UTR,intron lectin-28C +,TwdlE - chr2L_4_7855001 chr2L_7855001 RAL-237 61 chr2L 7959044 7959066 chr2L 7960455 7960477 pogo 6 1411 0.0 0.0 0.0 6.0 1433 chr2L 7959044 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960477 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-237 62 chr2L 7977092 7977112 chr2L 7984067 7984088 297 7 6975 3.0 5.0 4.0 1.4 6996 chr2L 7977092 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-237 63 chr2L 8018826 8018834 chr2L 8023610 8023618 Doc 5 4784 0.0 2.0 1.0 2.5 4792 chr2L 8018826 intron Tg + chr2L 8021222 intron Tg + chr2L 8023618 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-237 64 chr2L 8044102 8044129 chr2L 8044181 8044208 7 79 16.0 11.0 13.5 0.5 106 chr2L 8044102 intron CG7466 + chr2L 8044155 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_7_8040001 chr2L_8040001 RAL-237 65 chr2L 8323659 8323689 chr2L 8323736 8323767 8 76 12.0 13.5 12.8 0.6 108 chr2L 8323659 intron CG7781 - chr2L 8323713 intron CG7781 - chr2L 8323767 intron CG7781 - chr2L_8_8320001 chr2L_8320001 RAL-237 66 chr2L 8689705 8689725 chr2L 8689802 8689822 6 97 13.0 22.0 17.5 0.3 117 chr2L 8689705 intron Hnf4 - chr2L 8689764 intron Hnf4 - chr2L 8689822 exon Hnf4 - chr2L_6_8685001 chr2L_8685001 RAL-237 67 chr2L 8723121 8723142 chr2L 8731497 8731519 Tirant 6 8376 0.5 0.0 0.2 5.0 8398 chr2L 8723121 intron raw - chr2L 8727320 intron raw - chr2L 8731519 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-237 68 chr2L 9084337 9084340 chr2L 16217660 16217660 15 7133321 6.0 13.0 9.5 1.4 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-237 69 chr2L 9251152 9251170 chr2L 9251249 9251267 5 96 1.5 8.0 4.8 0.9 115 chr2L 9251152 intergenic aust -,borr - chr2L 9251210 intergenic aust -,borr - chr2L 9251267 intergenic borr -,aust - chr2L_5_9250001 chr2L_9250001 RAL-237 70 chr2L 9297381 9297405 chr2L 9297455 9297482 4 76 1.0 2.0 1.5 1.6 101 chr2L 9297381 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-237 71 chr2L 9303364 9303494 chr2L 9303466 9303571 7 87 6.0 3.0 4.5 1.3 207 chr2L 9303364 intergenic not near genes chr2L 9303468 intergenic not near genes chr2L 9303571 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-237 72 chr2L 9393509 9393515 chr2L 9396476 9396481 jockey 4 2966 2.5 2.5 2.5 1.1 2972 chr2L 9393509 intron Shawl - chr2L 9394995 intron Shawl - chr2L 9396481 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-237 73 chr2L 9610112 9610139 chr2L 9610190 9610218 7 72 8.5 9.0 8.8 0.7 106 chr2L 9610112 intron gcm2 + chr2L 9610165 intron gcm2 + chr2L 9610218 intron gcm2 + chr2L_7_9610001 chr2L_9610001 RAL-237 74 chr2L 9973745 9973758 chr2L 9980864 9980877 HMS-Beagle 5 7119 3.5 3.5 3.5 1.1 7132 chr2L 9973745 intergenic not near genes chr2L 9977311 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-237 75 chr2L 9986349 9986378 chr2L 9986444 9986473 4 95 16.0 13.5 14.8 0.3 124 chr2L 9986349 intron bib + chr2L 9986411 intron bib + chr2L 9986473 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-237 76 chr2L 10005106 10005130 chr2L 10005199 10005223 7 93 6.5 8.5 7.5 0.8 117 chr2L 10005106 intron CG4747 + chr2L 10005164 intron CG4747 + chr2L 10005223 intron CG4747 + chr2L_7_10005001 chr2L_10005001 RAL-237 77 chr2L 10130565 10130572 chr2L 10130647 10130654 4 82 5.5 7.0 6.2 0.6 89 chr2L 10130565 intron CG44153 - chr2L 10130610 intron CG44153 - chr2L 10130654 intron CG44153 - chr2L_4_10130001 chr2L_10130001 RAL-237 78 chr2L 10153208 10153238 chr2L 10153287 10153317 7 79 0.0 2.5 1.2 3.2 109 chr2L 10153208 intron,exon CG44153 -,CG4839 + chr2L 10153262 intron,intron CG44153 -,CG4839 + chr2L 10153317 intron,intron CG44153 -,CG4839 + chr2L_7_10150001 chr2L_10150001 RAL-237 79 chr2L 10156321 10156340 chr2L 10163791 10163791 blood 5 7466 2.0 1.0 1.5 2.0 7470 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160056 intron CG44153 - chr2L 10163791 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-237 80 chr2L 10175938 10175967 chr2L 10176018 10176047 5 80 5.0 6.5 5.8 0.7 109 chr2L 10175938 intron CG44153 - chr2L 10175992 intron CG44153 - chr2L 10176047 intron CG44153 - chr2L_5_10175001 chr2L_10175001 RAL-237 81 chr2L 10176024 10176024 chr2L 16217660 16217660 5 6041636 8.5 13.0 10.8 0.4 6041636 chr2L 10176024 intron CG44153 - chr2L 13196842 3` UTR Edem2 + chr2L 16217660 intergenic not near genes chr2L_5_13195001 chr2L_13195001 RAL-237 82 chr2L 10519951 10519974 chr2L 10520031 10520055 7 79 4.0 2.5 3.2 1.7 104 chr2L 10519951 intergenic not near genes chr2L 10520003 intergenic not near genes chr2L 10520055 intergenic not near genes chr2L_7_10520001 chr2L_10520001 RAL-237 83 chr2L 10669424 10669452 chr2L 10669512 10669540 5 87 5.0 10.5 7.8 0.6 116 chr2L 10669424 intron CG31871 + chr2L 10669482 intron CG31871 + chr2L 10669540 intron CG31871 + chr2L_5_10665001 chr2L_10665001 RAL-237 84 chr2L 10836339 10836366 chr2L 10836420 10836447 4 81 3.5 3.0 3.2 1.0 108 chr2L 10836339 intron Nos - chr2L 10836393 intron Nos - chr2L 10836447 intron Nos - chr2L_4_10835001 chr2L_10835001 RAL-237 85 chr2L 10862845 10862862 chr2L 10864459 10864476 Rt1c 4 1614 3.0 4.5 3.8 0.8 1631 chr2L 10862845 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864476 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-237 86 chr2L 10862868 10862876 chr2L 10864452 10864489 Rt1c 7 1609 2.0 3.5 2.8 1.8 1621 chr2L 10862868 3` UTR CR43807 - chr2L 10863678 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-237 87 chr2L 10873055 10873079 chr2L 10873135 10873138 5 75 6.5 4.0 5.2 0.8 83 chr2L 10873055 intergenic not near genes chr2L 10873096 intergenic not near genes chr2L 10873138 intergenic not near genes chr2L_5_10870001 chr2L_10870001 RAL-237 88 chr2L 10946949 10946974 chr2L 10956164 10956165 roo 7 9211 2.0 4.5 3.2 1.7 9216 chr2L 10946949 intron dpr2 - chr2L 10951557 intron dpr2 - chr2L 10956165 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-237 89 chr2L 11292379 11292408 chr2L 11292457 11292490 4 81 1.0 0.0 0.5 2.7 111 chr2L 11292379 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_4_11290001 chr2L_11290001 RAL-237 90 chr2L 11820430 11820454 chr2L 11820511 11820535 8 81 6.0 8.0 7.0 1.0 105 chr2L 11820430 intron Pde1c - chr2L 11820482 intron Pde1c - chr2L 11820535 intron Pde1c - chr2L_8_11820001 chr2L_11820001 RAL-237 91 chr2L 11826939 11826967 chr2L 11827017 11827045 11 78 15.5 14.5 15.0 0.7 106 chr2L 11826939 intron Pde1c - chr2L 11826992 intron Pde1c - chr2L 11827045 intron Pde1c - chr2L_11_11825001 chr2L_11825001 RAL-237 92 chr2L 12067330 12067348 chr2L 12074382 12074400 297 4 7052 1.5 1.0 1.2 1.8 7070 chr2L 12067330 intergenic not near genes chr2L 12070865 intergenic not near genes chr2L 12074400 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-237 93 chr2L 12239072 12239085 chr2L 12239160 12239173 4 88 2.0 5.5 3.8 0.8 101 chr2L 12239072 intron aret + chr2L 12239122 intron aret + chr2L 12239173 intron aret + chr2L_4_12235001 chr2L_12235001 RAL-237 94 chr2L 12299625 12299645 chr2L 12299702 12299722 4 77 2.5 1.0 1.8 1.4 97 chr2L 12299625 intron aret + chr2L 12299674 intron aret + chr2L 12299722 intron aret + chr2L_4_12295001 chr2L_12295001 RAL-237 95 chr2L 12305411 12305438 chr2L 12305499 12305526 7 88 6.5 4.5 5.5 1.1 115 chr2L 12305411 intron aret + chr2L 12305468 intron aret + chr2L 12305526 intron aret + chr2L_7_12305001 chr2L_12305001 RAL-237 96 chr2L 12454739 12454766 chr2L 12454836 12454862 4 96 5.5 5.0 5.2 0.6 123 chr2L 12454739 intergenic not near genes chr2L 12454800 intergenic not near genes chr2L 12454862 intergenic not near genes chr2L_4_12450001 chr2L_12450001 RAL-237 97 chr2L 12558318 12558352 chr2L 12565447 12565481 HMS-Beagle 4 7129 0.5 0.5 0.5 2.7 7163 chr2L 12558318 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565481 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-237 98 chr2L 12684221 12684247 chr2L 12684301 12684327 4 80 5.0 3.0 4.0 0.8 106 chr2L 12684221 intron pdm2 + chr2L 12684274 intron pdm2 + chr2L 12684327 intron pdm2 + chr2L_4_12680001 chr2L_12680001 RAL-237 99 chr2L 12693840 12693868 chr2L 12693917 12693945 7 77 6.5 6.0 6.2 1.0 105 chr2L 12693840 exon CG6153 + chr2L 12693892 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693945 3` UTR CG5780 - chr2L_7_12690001 chr2L_12690001 RAL-237 100 chr2L 12739173 12739198 chr2L 12743954 12743979 Doc 6 4780 2.0 3.0 2.5 1.7 4806 chr2L 12739173 exon MRP + chr2L 12741576 intron MRP + chr2L 12743979 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-237 101 chr2L 12894023 12894047 chr2L 12895489 12895514 hobo 4 1466 3.5 2.0 2.8 1.1 1491 chr2L 12894023 intergenic not near genes chr2L 12894768 intergenic not near genes chr2L 12895514 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-237 102 chr2L 13185326 13185342 chr2L 13185405 13185419 5 77 6.5 7.5 7.0 0.6 93 chr2L 13185326 3` UTR CG16974 - chr2L 13185372 3` UTR CG16974 - chr2L 13185419 exon CG16974 - chr2L_5_13185001 chr2L_13185001 RAL-237 103 chr2L 13204321 13204334 chr2L 13204420 13204433 5 99 10.5 13.0 11.8 0.4 112 chr2L 13204321 intron Pect + chr2L 13204377 intron Pect + chr2L 13204433 intron Pect + chr2L_5_13200001 chr2L_13200001 RAL-237 104 chr2L 13231886 13231914 chr2L 13231997 13232025 5 111 5.5 3.0 4.2 1.0 139 chr2L 13231886 intergenic Prosalpha6T + chr2L 13231956 intergenic Prosalpha6T + chr2L 13232025 intergenic Prosalpha6T + chr2L_5_13230001 chr2L_13230001 RAL-237 105 chr2L 13374343 13374355 chr2L 13374415 13374441 4 83 9.5 9.0 9.2 0.4 98 chr2L 13374343 5` UTR CG6565 + chr2L 13374392 5` UTR CG6565 + chr2L 13374441 5` UTR CG6565 + chr2L_4_13370001 chr2L_13370001 RAL-237 106 chr2L 13405648 13405675 chr2L 13410445 13410471 Doc 10 4797 4.0 4.5 4.2 1.9 4823 chr2L 13405648 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410471 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-237 107 chr2L 13498373 13498402 chr2L 13498453 13498462 4 69 16.0 18.0 17.0 0.2 89 chr2L 13498373 exon CG42784 + chr2L 13498418 exon CG42784 + chr2L 13498462 exon CG42784 + chr2L_4_13495001 chr2L_13495001 RAL-237 108 chr2L 13546779 13546807 chr2L 13546862 13546890 7 83 10.0 10.5 10.2 0.6 111 chr2L 13546779 intron B4 - chr2L 13546834 intron B4 - chr2L 13546890 intron B4 - chr2L_7_13545001 chr2L_13545001 RAL-237 109 chr2L 14135230 14135264 chr2L 14135311 14135345 5 80 6.0 3.0 4.5 0.9 115 chr2L 14135230 intron CG17341 + chr2L 14135288 intron CG17341 + chr2L 14135345 intron CG17341 + chr2L_5_14135001 chr2L_14135001 RAL-237 110 chr2L 14391936 14391946 chr2L 14392011 14392020 4 75 7.0 9.5 8.2 0.4 84 chr2L 14391936 exon elB - chr2L 14391978 intron elB - chr2L 14392020 intron elB - chr2L_4_14390001 chr2L_14390001 RAL-237 111 chr2L 14588386 14588413 chr2L 14588539 14588567 4 154 1.0 2.0 1.5 1.6 181 chr2L 14588386 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588567 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-237 112 chr2L 15066577 15066604 chr2L 15066670 15066697 8 92 5.0 1.5 3.2 1.9 120 chr2L 15066577 intron,intron vas +,vig - chr2L 15066637 intron,intron vas +,vig - chr2L 15066697 intron,intron vas +,vig - chr2L_8_15065001 chr2L_15065001 RAL-237 113 chr2L 15226374 15226390 chr2L 15226450 15226466 4 76 3.5 1.0 2.2 1.2 92 chr2L 15226374 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226466 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-237 114 chr2L 15244053 15244066 chr2L 15244166 15244177 4 112 1.0 4.5 2.8 1.1 124 chr2L 15244053 intron ZnT35C - chr2L 15244115 intron ZnT35C - chr2L 15244177 intron ZnT35C - chr2L_4_15240001 chr2L_15240001 RAL-237 115 chr2L 15350914 15350926 chr2L 15350998 15351010 4 84 3.5 4.5 4.0 0.8 96 chr2L 15350914 intergenic not near genes chr2L 15350962 intergenic not near genes chr2L 15351010 intergenic not near genes chr2L_4_15350001 chr2L_15350001 RAL-237 116 chr2L 15470512 15470536 chr2L 15470610 15470634 5 98 3.0 2.0 2.5 1.4 122 chr2L 15470512 intergenic not near genes chr2L 15470573 intergenic not near genes chr2L 15470634 intergenic not near genes chr2L_5_15470001 chr2L_15470001 RAL-237 117 chr2L 15836806 15836831 chr2L 15836885 15836911 4 79 3.0 0.5 1.8 1.4 105 chr2L 15836806 intergenic not near genes chr2L 15836858 intergenic not near genes chr2L 15836911 intergenic not near genes chr2L_4_15835001 chr2L_15835001 RAL-237 118 chr2L 15956030 15956042 chr2L 15957497 15957509 hobo 4 1467 0.5 1.0 0.8 2.2 1479 chr2L 15956030 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957509 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-237 119 chr2L 10176023 10176023 chr2L 16071771 16071771 4 5895748 8.0 6.5 7.2 0.5 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-237 120 chr2L 16071771 16071771 chr2L 16217659 16217661 copia 42 145889 6.5 13.0 9.8 3.9 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_42_16140001 chr2L_16140001 RAL-237 121 chr2L 9084336 9084340 chr2L 16217660 16217660 18 7133321 6.0 13.0 9.5 1.7 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_18_12650001 chr2L_12650001 RAL-237 122 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 26 145889 6.5 13.0 9.8 2.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_26_16140001 chr2L_16140001 RAL-237 123 chr2L 16467911 16467921 chr2L 16467999 16468009 5 88 1.0 4.5 2.8 1.3 98 chr2L 16467911 intron dac - chr2L 16467960 intron dac - chr2L 16468009 intron dac - chr2L_5_16465001 chr2L_16465001 RAL-237 124 chr2L 16511980 16511996 chr2L 16519094 16519110 HMS-Beagle 4 7114 1.0 1.0 1.0 2.0 7130 chr2L 16511980 intron CG5953 - chr2L 16515545 intron CG5953 - chr2L 16519110 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-237 125 chr2L 17000126 17000151 chr2L 17000248 17000273 5 122 2.5 5.0 3.8 1.0 147 chr2L 17000126 intergenic not near genes chr2L 17000200 intergenic not near genes chr2L 17000273 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-237 126 chr2L 17273200 17273227 chr2L 17277983 17278009 F-element 6 4779 1.5 3.5 2.5 1.7 4809 chr2L 17273200 intergenic not near genes chr2L 17275604 intergenic not near genes chr2L 17278009 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-237 127 chr2L 17819927 17819947 chr2L 17825130 17825149 copia 5 5203 1.0 2.0 1.5 2.0 5222 chr2L 17819927 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825149 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-237 128 chr2L 18051873 18051902 chr2L 18061020 18061046 roo 5 9145 0.5 0.5 0.5 3.3 9173 chr2L 18051873 intron rdo + chr2L 18056460 intron rdo + chr2L 18061046 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-237 129 chr2L 18755929 18755950 chr2L 18756159 18756181 8 230 8.5 4.5 6.5 1.1 252 chr2L 18755929 intergenic not near genes chr2L 18756055 intergenic not near genes chr2L 18756181 intergenic not near genes chr2L_8_18755001 chr2L_18755001 RAL-237 130 chr2L 18898401 18898427 chr2L 18898483 18898505 8 80 2.0 0.5 1.2 3.6 104 chr2L 18898401 intergenic not near genes chr2L 18898453 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_8_18895001 chr2L_18895001 RAL-237 131 chr2L 19024096 19024097 chr2L 21768291 21768293 8 2744195 21.5 10.0 15.8 0.5 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_8_20395001 chr2L_20395001 RAL-237 132 chr2L 19070273 19070292 chr2L 19070366 19070385 5 91 9.0 12.5 10.8 0.4 112 chr2L 19070273 intergenic CG10702 - chr2L 19070329 intergenic CG10702 - chr2L 19070385 intergenic not near genes chr2L_5_19070001 chr2L_19070001 RAL-237 133 chr2L 19147372 19147401 chr2L 19154407 19154436 297 5 7034 0.5 0.0 0.2 4.2 7064 chr2L 19147372 intron brat + chr2L 19150904 intron brat + chr2L 19154436 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-237 134 chr2L 19163249 19163383 chr2L 19163337 19163464 8 84 9.0 3.5 6.2 1.1 215 chr2L 19163249 intron brat + chr2L 19163356 intron brat + chr2L 19163464 intron brat + chr2L_8_19160001 chr2L_19160001 RAL-237 135 chr2L 19342971 19342990 chr2L 19343054 19343074 4 80 0.5 1.5 1.0 2.0 103 chr2L 19342971 intron dnt - chr2L 19343022 intron dnt - chr2L 19343074 intron dnt - chr2L_4_19340001 chr2L_19340001 RAL-237 136 chr2L 19384008 19384021 chr2L 19384089 19384122 6 96 12.5 16.0 14.2 0.4 114 chr2L 19384008 exon fon - chr2L 19384065 exon fon - chr2L 19384122 exon fon - chr2L_6_19380001 chr2L_19380001 RAL-237 137 chr2L 19469181 19469201 chr2L 19469265 19469276 4 81 4.5 7.0 5.8 0.6 95 chr2L 19469181 5` UTR CR45722 + chr2L 19469228 5` UTR CR45722 + chr2L 19469276 5` UTR CR45722 + chr2L_4_19465001 chr2L_19465001 RAL-237 138 chr2L 19543131 19543156 chr2L 19543214 19543240 4 84 9.5 7.5 8.5 0.4 109 chr2L 19543131 intron ref(2)P + chr2L 19543186 intron ref(2)P + chr2L 19543240 intron ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-237 139 chr2L 19544611 19544620 chr2L 19544661 19544664 4 54 15.5 15.5 15.5 0.2 53 chr2L 19544611 exon ref(2)P + chr2L 19544638 exon ref(2)P + chr2L 19544664 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-237 140 chr2L 19620093 19620107 chr2L 19621080 19621096 jockey 4 988 3.0 1.5 2.2 1.2 1003 chr2L 19620093 intron Lar + chr2L 19620594 intron Lar + chr2L 19621096 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-237 141 chr2L 19703535 19703556 chr2L 19712671 19712690 roo 8 9136 3.0 0.5 1.8 2.9 9155 chr2L 19703535 intron Lar + chr2L 19708112 intron Lar + chr2L 19712690 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-237 142 chr2L 19737370 19737388 chr2L 19740836 19740853 1360 5 3466 0.0 4.0 2.0 1.7 3483 chr2L 19737370 intergenic Nf-YB + chr2L 19739112 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-237 143 chr2L 19911306 19911319 chr2L 19911394 19911407 5 88 6.5 10.5 8.5 0.5 101 chr2L 19911306 intron,3` UTR sick +,CR43097 - chr2L 19911356 intron,3` UTR sick +,CR43097 - chr2L 19911407 intron,3` UTR sick +,CR43097 - chr2L_5_19910001 chr2L_19910001 RAL-237 144 chr2L 20079522 20079545 chr2L 20079643 20079664 4 120 3.0 0.5 1.8 1.4 142 chr2L 20079522 intron,intron neb +,fok - chr2L 20079593 intron,intron neb +,fok - chr2L 20079664 intron,intron neb +,fok - chr2L_4_20075001 chr2L_20075001 RAL-237 145 chr2L 20272118 20272136 chr2L 20282828 20282847 copia 5 10709 2.0 1.0 1.5 2.0 10729 chr2L 20272118 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282847 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-237 146 chr2L 20303167 20303191 chr2L 20310635 20310658 blood 8 7467 1.5 1.0 1.2 3.6 7491 chr2L 20303167 intergenic not near genes chr2L 20306912 intergenic not near genes chr2L 20310658 intergenic not near genes chr2L_8_20305001 chr2L_20305001 RAL-237 147 chr2L 20312749 20312753 chr2L 20313030 20313035 4 284 5.0 14.0 9.5 0.4 286 chr2L 20312749 intron spir + chr2L 20312892 intron spir + chr2L 20313035 intron spir + chr2L_4_20310001 chr2L_20310001 RAL-237 148 chr2L 20315704 20315719 chr2L 20315797 20315812 5 93 6.0 5.0 5.5 0.8 108 chr2L 20315704 intron spir + chr2L 20315758 intron spir + chr2L 20315812 intron spir + chr2L_5_20315001 chr2L_20315001 RAL-237 149 chr2L 20338714 20338736 chr2L 20338795 20338817 4 80 10.5 11.5 11.0 0.3 103 chr2L 20338714 intron spir + chr2L 20338766 intron spir + chr2L 20338817 intron spir + chr2L_4_20335001 chr2L_20335001 RAL-237 150 chr2L 20376185 20376211 chr2L 20377475 20377503 12 1290 24.0 28.5 26.2 0.4 1318 chr2L 20376185 intergenic not near genes chr2L 20376844 intergenic CG16798 - chr2L 20377503 exon CG16798 - chr2L_12_20375001 chr2L_20375001 RAL-237 151 chr2L 20639514 20639524 chr2L 20639789 20639800 INE-1 4 274 0.5 2.5 1.5 1.6 286 chr2L 20639514 intergenic not near genes chr2L 20639657 intergenic CG31680 + chr2L 20639800 intergenic CG31680 + chr2L_4_20635001 chr2L_20635001 RAL-237 152 chr2L 20821505 20821521 chr2L 20821653 20821668 7 147 6.5 9.5 8.0 0.8 163 chr2L 20821505 intergenic not near genes chr2L 20821586 intergenic not near genes chr2L 20821668 intergenic not near genes chr2L_7_20820001 chr2L_20820001 RAL-237 153 chr2L 20840031 20840052 chr2L 20840243 20840263 5 211 3.5 2.0 2.8 1.3 232 chr2L 20840031 intergenic not near genes chr2L 20840147 intergenic not near genes chr2L 20840263 intergenic CG31676 + chr2L_5_20840001 chr2L_20840001 RAL-237 154 chr2L 20967087 20967105 chr2L 20967173 20967191 4 86 8.0 9.0 8.5 0.4 104 chr2L 20967087 3` UTR CG42238 - chr2L 20967139 3` UTR CG42238 - chr2L 20967191 3` UTR CG42238 - chr2L_4_20965001 chr2L_20965001 RAL-237 155 chr2L 21234426 21234452 chr2L 21234575 21234599 5 148 7.0 11.5 9.2 0.5 173 chr2L 21234426 intron CG31626 - chr2L 21234512 intron CG31626 - chr2L 21234599 intron CG31626 - chr2L_5_21230001 chr2L_21230001 RAL-237 156 chr2R 4933379 4933384 chr2R 4933943 4933947 5 564 4.5 7.0 5.8 0.7 568 chr2R 4933379 intron Ir41a + chr2R 4933663 intron Ir41a + chr2R 4933947 intron Ir41a + chr2R_5_4930001 chr2R_4930001 RAL-237 157 chr2R 5869281 5869298 chr2R 5874357 5874374 flea 4 5076 0.5 2.0 1.2 1.8 5093 chr2R 5869281 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874374 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-237 158 chr2R 6033445 6033466 chr2R 6033529 6033551 4 82 6.5 8.5 7.5 0.5 106 chr2R 6033445 intron SCAP - chr2R 6033498 intron SCAP - chr2R 6033551 intron SCAP - chr2R_4_6030001 chr2R_6030001 RAL-237 159 chr2R 6037459 6037479 chr2R 6037544 6037564 6 85 4.0 1.5 2.8 1.6 105 chr2R 6037459 intron CG14591 - chr2R 6037512 intron CG14591 - chr2R 6037564 intron CG14591 - chr2R_6_6035001 chr2R_6035001 RAL-237 160 chr2R 6088372 6088377 chr2R 6088465 6088469 4 93 3.0 1.0 2.0 1.3 97 chr2R 6088372 intergenic not near genes chr2R 6088420 intergenic not near genes chr2R 6088469 intergenic not near genes chr2R_4_6085001 chr2R_6085001 RAL-237 161 chr2R 6096739 6096747 chr2R 6101924 6101943 BS 4 5193 4.5 5.5 5.0 0.7 5204 chr2R 6096739 intron EcR - chr2R 6099341 intron EcR - chr2R 6101943 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-237 162 chr2R 6236212 6236244 chr2R 6236299 6236325 11 87 16.5 11.0 13.8 0.7 113 chr2R 6236212 intron bin3 + chr2R 6236268 intron bin3 + chr2R 6236325 intron bin3 + chr2R_11_6235001 chr2R_6235001 RAL-237 163 chr2R 6247818 6247830 chr2R 6247896 6247907 4 77 0.5 0.5 0.5 2.7 89 chr2R 6247818 intron Pld + chr2R 6247862 intron Pld + chr2R 6247907 intron Pld + chr2R_4_6245001 chr2R_6245001 RAL-237 164 chr2R 6500957 6500990 chr2R 6501051 6501084 9 94 12.0 9.5 10.8 0.8 127 chr2R 6500957 intergenic not near genes chr2R 6501020 intergenic not near genes chr2R 6501084 intergenic not near genes chr2R_9_6500001 chr2R_6500001 RAL-237 165 chr2R 6640352 6640379 chr2R 6640443 6640469 6 87 10.0 11.0 10.5 0.5 117 chr2R 6640352 exon Bap170 + chr2R 6640410 exon Bap170 + chr2R 6640469 exon Bap170 + chr2R_6_6640001 chr2R_6640001 RAL-237 166 chr2R 6696607 6696631 chr2R 6696690 6696714 7 82 16.0 18.0 17.0 0.4 107 chr2R 6696607 5` UTR Mob4 - chr2R 6696660 5` UTR Mob4 - chr2R 6696714 intergenic Rab2 +,Mob4 - chr2R_7_6695001 chr2R_6695001 RAL-237 167 chr2R 7052056 7052067 chr2R 7052135 7052139 5 78 8.5 8.0 8.2 0.5 83 chr2R 7052056 intergenic lbm + chr2R 7052098 intergenic lbm + chr2R 7052139 intergenic lbm + chr2R_5_7050001 chr2R_7050001 RAL-237 168 chr2R 7196573 7196594 chr2R 7201348 7201369 F-element 7 4775 2.0 1.5 1.8 2.5 4796 chr2R 7196573 intron pk + chr2R 7198971 intron pk + chr2R 7201369 intron pk + chr2R_7_7195001 chr2R_7195001 RAL-237 169 chr2R 7235819 7235843 chr2R 7240910 7240933 jockey 6 5090 4.0 3.5 3.8 1.2 5114 chr2R 7235819 intergenic not near genes chr2R 7238376 intergenic not near genes chr2R 7240933 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-237 170 chr2R 7269830 7269862 chr2R 7273941 7273970 11 4111 31.0 70.0 50.5 0.2 4140 chr2R 7269830 intergenic not near genes chr2R 7271900 intergenic Br140 - chr2R 7273970 exon Br140 - chr2R_11_7270001 chr2R_7270001 RAL-237 171 chr2R 7345235 7345254 chr2R 7345334 7345352 7 98 6.0 5.0 5.5 1.1 117 chr2R 7345235 intron Dscam1 - chr2R 7345294 intron Dscam1 - chr2R 7345352 intron Dscam1 - chr2R_7_7345001 chr2R_7345001 RAL-237 172 chr2R 7417907 7418163 chr2R 7417993 7418230 4 78 2.0 4.5 3.2 1.0 323 chr2R 7417907 intergenic not near genes chr2R 7418068 intergenic not near genes chr2R 7418230 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-237 173 chr2R 7434891 7434910 chr2R 7439192 7439210 Juan 5 4301 1.0 5.0 3.0 1.2 4319 chr2R 7434891 intergenic so + chr2R 7437050 intergenic not near genes chr2R 7439210 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-237 174 chr2R 7523605 7523629 chr2R 7524358 7524382 5 754 36.0 29.0 32.5 0.1 777 chr2R 7523605 exon Orc1 - chr2R 7523994 exon Orc1 - chr2R 7524382 exon Orc1 - chr2R_5_7520001 chr2R_7520001 RAL-237 175 chr2R 7608417 7608429 chr2R 7613620 7613632 I-element 4 5201 0.5 0.0 0.2 3.3 5215 chr2R 7608417 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613632 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-237 176 chr2R 7742766 7742796 chr2R 7742848 7742875 8 79 2.0 3.0 2.5 2.3 109 chr2R 7742766 intron,intron CG30497 -,CG45093 - chr2R 7742820 intron,intron CG30497 -,CG45093 - chr2R 7742875 intron,intron CG30497 -,CG45093 - chr2R_8_7740001 chr2R_7740001 RAL-237 177 chr2R 7743484 7743502 chr2R 7743565 7743581 6 80 6.0 7.0 6.5 0.8 97 chr2R 7743484 intron,intron CG30497 -,CG45093 - chr2R 7743532 intron,intron CG30497 -,CG45093 - chr2R 7743581 intron,intron CG30497 -,CG45093 - chr2R_6_7740001 chr2R_7740001 RAL-237 178 chr2R 7815677 7815696 chr2R 7822146 7822163 Burdock 7 6467 0.5 4.5 2.5 2.0 6486 chr2R 7815677 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822163 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-237 179 chr2R 7851264 7851294 chr2R 7851350 7851376 5 85 4.0 5.0 4.5 0.9 112 chr2R 7851264 intron Dgk - chr2R 7851320 intron Dgk - chr2R 7851376 intron Dgk - chr2R_5_7850001 chr2R_7850001 RAL-237 180 chr2R 8015647 8015682 chr2R 8017667 8017702 9 2020 4.0 1.0 2.5 2.6 2055 chr2R 8015647 intergenic mir-4981 + chr2R 8016674 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-237 181 chr2R 8068831 8068858 chr2R 8068927 8068956 9 97 17.5 20.5 19.0 0.5 125 chr2R 8068831 intron lig + chr2R 8068894 intron lig + chr2R 8068956 intron lig + chr2R_9_8065001 chr2R_8065001 RAL-237 182 chr2R 8076682 8076703 chr2R 8076762 8076782 4 80 2.5 7.0 4.8 0.7 100 chr2R 8076682 intron lig + chr2R 8076732 intron lig + chr2R 8076782 intron lig + chr2R_4_8075001 chr2R_8075001 RAL-237 183 chr2R 8615784 8615807 chr2R 8615894 8615920 8 113 4.5 6.5 5.5 1.2 136 chr2R 8615784 intron Cirl + chr2R 8615852 intron Cirl + chr2R 8615920 5` UTR Cirl + chr2R_8_8615001 chr2R_8615001 RAL-237 184 chr2R 8722763 8722784 chr2R 8723004 8723021 pogo 4 237 1.5 1.0 1.2 1.8 258 chr2R 8722763 intron CG14767 - chr2R 8722892 intron CG14767 - chr2R 8723021 intron CG14767 - chr2R_4_8720001 chr2R_8720001 RAL-237 185 chr2R 8776269 8776281 chr2R 8776580 8776592 4 308 3.0 6.5 4.8 0.7 323 chr2R 8776269 intergenic not near genes chr2R 8776430 intergenic not near genes chr2R 8776592 intergenic not near genes chr2R_4_8775001 chr2R_8775001 RAL-237 186 chr2R 8941575 8941598 chr2R 8941664 8941691 12 92 10.5 14.0 12.2 0.9 116 chr2R 8941575 intergenic CR44273 +,CG13748 + chr2R 8941633 5` UTR CR44273 + chr2R 8941691 5` UTR CR44273 + chr2R_12_8940001 chr2R_8940001 RAL-237 187 chr2R 8966156 8966176 chr2R 8966246 8966265 5 90 5.0 7.0 6.0 0.7 109 chr2R 8966156 intron CG8216 - chr2R 8966210 intron CG8216 - chr2R 8966265 intron CG8216 - chr2R_5_8965001 chr2R_8965001 RAL-237 188 chr2R 9151300 9151332 chr2R 9157770 9157801 Burdock 5 6470 2.5 2.5 2.5 1.4 6501 chr2R 9151300 exon CG30345 + chr2R 9154550 intergenic not near genes chr2R 9157801 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-237 189 chr2R 9161973 9162000 chr2R 9162058 9162085 5 85 7.5 4.0 5.8 0.7 112 chr2R 9161973 5` UTR CR44283 + chr2R 9162029 intergenic CG8046 -,CR44283 + chr2R 9162085 3` UTR CG8046 - chr2R_5_9160001 chr2R_9160001 RAL-237 190 chr2R 9191914 9191937 chr2R 9192000 9192023 8 85 7.0 5.5 6.2 1.1 109 chr2R 9191914 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191968 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192023 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_8_9190001 chr2R_9190001 RAL-237 191 chr2R 9212711 9212726 chr2R 9213180 9213186 roo 5 471 3.0 7.0 5.0 0.8 475 chr2R 9212711 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213186 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-237 192 chr2R 9216998 9217020 chr2R 9217074 9217095 4 76 3.5 3.0 3.2 1.0 97 chr2R 9216998 intergenic not near genes chr2R 9217046 intergenic not near genes chr2R 9217095 intergenic not near genes chr2R_4_9215001 chr2R_9215001 RAL-237 193 chr2R 9368129 9368153 chr2R 9368205 9368229 8 73 2.5 0.5 1.5 3.2 100 chr2R 9368129 intron CG13954 - chr2R 9368179 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-237 194 chr2R 9412096 9412106 chr2R 9412206 9412216 4 110 4.0 3.0 3.5 0.9 120 chr2R 9412096 intron wun - chr2R 9412156 intron wun - chr2R 9412216 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-237 195 chr2R 9669140 9669166 chr2R 9669241 9669267 5 101 4.5 5.5 5.0 0.8 127 chr2R 9669140 intron Mmp2 - chr2R 9669204 intron Mmp2 - chr2R 9669267 intron Mmp2 - chr2R_5_9665001 chr2R_9665001 RAL-237 196 chr2R 9935034 9935055 chr2R 9935115 9935137 4 82 2.5 2.5 2.5 1.1 103 chr2R 9935034 intron Mef2 - chr2R 9935086 intron Mef2 - chr2R 9935137 intron Mef2 - chr2R_4_9935001 chr2R_9935001 RAL-237 197 chr2R 9963369 9963397 chr2R 9963485 9963515 6 118 7.5 5.0 6.2 0.8 146 chr2R 9963369 3` UTR Pal1 + chr2R 9963442 3` UTR Pal1 + chr2R 9963515 3` UTR Pal1 + chr2R_6_9960001 chr2R_9960001 RAL-237 198 chr2R 9975927 9975939 chr2R 9976041 9976054 4 115 13.0 8.5 10.8 0.3 127 chr2R 9975927 intergenic not near genes chr2R 9975990 intergenic not near genes chr2R 9976054 intergenic not near genes chr2R_4_9975001 chr2R_9975001 RAL-237 199 chr2R 10216192 10216221 chr2R 10216269 10216299 7 78 3.0 6.5 4.8 1.2 107 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216299 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-237 200 chr2R 10266500 10266522 chr2R 10266588 10266613 4 86 12.0 11.0 11.5 0.3 113 chr2R 10266500 intron CG12910 + chr2R 10266556 intron CG12910 + chr2R 10266613 intron CG12910 + chr2R_4_10265001 chr2R_10265001 RAL-237 201 chr2R 10352675 10352697 chr2R 10352752 10352774 7 77 3.5 2.0 2.8 1.8 99 chr2R 10352675 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352724 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352774 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-237 202 chr2R 10469022 10469050 chr2R 10469148 10469176 10 126 8.0 11.0 9.5 1.0 154 chr2R 10469022 intron CG11777 + chr2R 10469099 intron CG11777 + chr2R 10469176 intron CG11777 + chr2R_10_10465001 chr2R_10465001 RAL-237 203 chr2R 10644061 10644084 chr2R 10644139 10644157 5 77 0.5 0.0 0.2 4.2 96 chr2R 10644061 intron Git - chr2R 10644109 intron Git - chr2R 10644157 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-237 204 chr2R 10827340 10827359 chr2R 10827423 10827446 7 87 11.0 6.5 8.8 0.7 106 chr2R 10827340 exon CG12325 + chr2R 10827393 3` UTR CG12325 + chr2R 10827446 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_7_10825001 chr2R_10825001 RAL-237 205 chr2R 10892626 10892651 chr2R 10892705 10892731 4 80 6.5 6.5 6.5 0.5 105 chr2R 10892626 3` UTR CG30020 + chr2R 10892678 3` UTR CG30020 + chr2R 10892731 3` UTR CG30020 + chr2R_4_10890001 chr2R_10890001 RAL-237 206 chr2R 10948036 10948060 chr2R 10955583 10955603 17.6 4 7544 0.5 3.5 2.0 1.3 7567 chr2R 10948036 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955603 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-237 207 chr2R 11009830 11009844 chr2R 11019004 11019017 roo 4 9173 0.0 2.0 1.0 2.0 9187 chr2R 11009830 intron luna - chr2R 11014424 intron luna - chr2R 11019017 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-237 208 chr2R 11071558 11071583 chr2R 11071663 11071688 5 104 3.0 1.0 2.0 1.7 130 chr2R 11071558 intron luna - chr2R 11071623 intron luna - chr2R 11071688 intron luna - chr2R_5_11070001 chr2R_11070001 RAL-237 209 chr2R 11207813 11207845 chr2R 11208006 11208037 BS 4 193 3.0 1.5 2.2 1.2 224 chr2R 11207813 intron shn + chr2R 11207925 intron shn + chr2R 11208037 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-237 210 chr2R 11472657 11472661 chr2R 11473854 11473858 pogo 4 1197 2.5 2.0 2.2 1.2 1201 chr2R 11472657 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473858 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-237 211 chr2R 11494606 11494633 chr2R 11494695 11494721 4 85 1.0 1.5 1.2 1.8 115 chr2R 11494606 intron inv + chr2R 11494664 intron inv + chr2R 11494721 intron inv + chr2R_4_11490001 chr2R_11490001 RAL-237 212 chr2R 8518786 8518803 chr2R 12066181 12066197 6 3547396 7.0 17.5 12.2 0.5 3547411 chr2R 8518786 intron mtt - chr2R 10292492 intron CAP + chr2R 12066197 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-237 213 chr2R 12120404 12120434 chr2R 12120486 12120516 11 76 17.0 15.0 16.0 0.6 112 chr2R 12120404 intergenic not near genes chr2R 12120460 intergenic not near genes chr2R 12120516 intergenic not near genes chr2R_11_12120001 chr2R_12120001 RAL-237 214 chr2R 12145913 12145941 chr2R 12148606 12148634 8 2694 21.0 34.5 27.8 0.3 2721 chr2R 12145913 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148634 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-237 215 chr2R 12186003 12186035 chr2R 12186097 12186129 6 92 0.0 0.5 0.2 5.0 126 chr2R 12186003 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186129 intron Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-237 216 chr2R 12187474 12187508 chr2R 12190090 12190124 36 2618 86.5 64.0 75.2 0.5 2650 chr2R 12187474 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_36_12185001 chr2R_12185001 RAL-237 217 chr2R 12481140 12481170 chr2R 12482942 12482974 roo 15 1800 4.0 11.5 7.8 1.7 1834 chr2R 12481140 exon Dh44-R2 + chr2R 12482057 intron Dh44-R2 + chr2R 12482974 intron Dh44-R2 + chr2R_15_12480001 chr2R_12480001 RAL-237 218 chr2R 12501696 12501724 chr2R 12503855 12503876 Rt1c 8 2160 2.5 6.5 4.5 1.5 2180 chr2R 12501696 intron fdl - chr2R 12502786 intron fdl - chr2R 12503876 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-237 219 chr2R 12504156 12504174 chr2R 12504233 12504250 5 77 14.0 15.0 14.5 0.3 94 chr2R 12504156 intron fdl - chr2R 12504203 intron fdl - chr2R 12504250 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-237 220 chr2R 12565565 12565592 chr2R 12565935 12565962 5 370 1.5 0.5 1.0 2.5 397 chr2R 12565565 intergenic not near genes chr2R 12565764 intergenic Cyp301a1 + chr2R 12565962 intergenic Cyp301a1 + chr2R_5_12565001 chr2R_12565001 RAL-237 221 chr2R 12789301 12789328 chr2R 12797664 12797685 roo 6 8360 2.0 2.5 2.2 1.9 8384 chr2R 12789301 intron,3` UTR sca +,CR45137 - chr2R 12793493 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-237 222 chr2R 13136834 13136867 chr2R 13141631 13141665 Doc 22 4797 4.0 4.0 4.0 4.4 4831 chr2R 13136834 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_22_13135001 chr2R_13135001 RAL-237 223 chr2R 13512882 13512912 chr2R 13512958 13512988 5 76 4.5 4.5 4.5 0.9 106 chr2R 13512882 3` UTR mip120 + chr2R 13512935 3` UTR mip120 + chr2R 13512988 3` UTR mip120 + chr2R_5_13510001 chr2R_13510001 RAL-237 224 chr2R 13547086 13547107 chr2R 13547281 13547300 5 195 0.5 3.0 1.8 1.8 214 chr2R 13547086 intron CG6145 - chr2R 13547193 intron CG6145 - chr2R 13547300 intron CG6145 - chr2R_5_13545001 chr2R_13545001 RAL-237 225 chr2R 13580496 13580524 chr2R 13580846 13580874 jockey 8 350 0.5 1.0 0.8 4.4 378 chr2R 13580496 3` UTR CG6191 - chr2R 13580685 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580874 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-237 226 chr2R 13580525 13580528 chr2R 13580843 13580878 jockey 4 342 0.5 1.0 0.8 2.2 353 chr2R 13580525 3` UTR CG6191 - chr2R 13580702 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580878 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-237 227 chr2R 13690677 13690701 chr2R 13690957 13690981 4 280 5.5 7.5 6.5 0.5 304 chr2R 13690677 intron fas + chr2R 13690829 intron fas + chr2R 13690981 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-237 228 chr2R 13692319 13692351 chr2R 13692403 13692435 13 84 4.0 2.0 3.0 3.2 116 chr2R 13692319 intron,intron fas +,CG6220 - chr2R 13692377 intron,intron fas +,CG6220 - chr2R 13692435 intron,intron fas +,CG6220 - chr2R_13_13690001 chr2R_13690001 RAL-237 229 chr2R 14393872 14393897 chr2R 14393956 14393982 4 84 1.5 0.0 0.8 2.2 110 chr2R 14393872 intergenic not near genes chr2R 14393927 intergenic not near genes chr2R 14393982 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-237 230 chr2R 14855031 14855057 chr2R 14855123 14855141 5 90 4.5 0.5 2.5 1.4 110 chr2R 14855031 5` UTR Ciao1 - chr2R 14855086 intergenic Ciao1 -,HPS1 + chr2R 14855141 intergenic Ciao1 -,HPS1 + chr2R_5_14855001 chr2R_14855001 RAL-237 231 chr2R 14889207 14889228 chr2R 14897815 14897835 Max-element 4 8607 1.5 0.0 0.8 2.2 8628 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893521 intergenic not near genes chr2R 14897835 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-237 232 chr2R 14911704 14911723 chr2R 14911826 14911846 10 122 3.0 2.5 2.8 2.6 142 chr2R 14911704 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911846 intron CG10249 - chr2R_10_14910001 chr2R_14910001 RAL-237 233 chr2R 15051086 15051110 chr2R 15051167 15051191 4 82 7.0 9.0 8.0 0.4 105 chr2R 15051086 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051191 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-237 234 chr2R 15119317 15119350 chr2R 15127797 15127831 Tirant 7 8478 0.5 3.5 2.0 2.3 8514 chr2R 15119317 intron chn + chr2R 15123574 intron chn + chr2R 15127831 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-237 235 chr2R 15448310 15448317 chr2R 15448395 15448406 4 88 2.5 2.0 2.2 1.2 96 chr2R 15448310 intron CG43729 + chr2R 15448358 intron CG43729 + chr2R 15448406 intron CG43729 + chr2R_4_15445001 chr2R_15445001 RAL-237 236 chr2R 15489974 15490005 chr2R 15490546 15490577 6 572 5.0 5.0 5.0 1.0 603 chr2R 15489974 intron CG12964 - chr2R 15490276 intron CG12964 - chr2R 15490577 intron CG12964 - chr2R_6_15490001 chr2R_15490001 RAL-237 237 chr2R 15655981 15655999 chr2R 15656060 15656077 4 78 2.0 1.5 1.8 1.4 96 chr2R 15655981 intron CG42524 + chr2R 15656029 intron CG42524 + chr2R 15656077 intron CG42524 + chr2R_4_15655001 chr2R_15655001 RAL-237 238 chr2R 15873856 15873886 chr2R 15873950 15873980 5 94 9.0 9.5 9.2 0.5 124 chr2R 15873856 intron sli - chr2R 15873918 intron sli - chr2R 15873980 intron sli - chr2R_5_15870001 chr2R_15870001 RAL-237 239 chr2R 16119891 16119921 chr2R 16120014 16120043 12 123 11.0 11.5 11.2 1.0 152 chr2R 16119891 5` UTR Jhe + chr2R 16119967 intron Jhe + chr2R 16120043 intron Jhe + chr2R_12_16115001 chr2R_16115001 RAL-237 240 chr2R 16586879 16586908 chr2R 16586957 16586986 4 78 8.0 3.5 5.8 0.6 107 chr2R 16586879 intergenic RpLP2 +,CG8311 - chr2R 16586932 intergenic CG8311 -,RpLP2 + chr2R 16586986 intergenic CG8311 -,RpLP2 + chr2R_4_16585001 chr2R_16585001 RAL-237 241 chr2R 16619970 16620002 chr2R 16620051 16620083 9 81 4.0 0.5 2.2 2.8 113 chr2R 16619970 intron CG5065 + chr2R 16620026 intron CG5065 + chr2R 16620083 intron CG5065 + chr2R_9_16620001 chr2R_16620001 RAL-237 242 chr2R 16641681 16641688 chr2R 16641763 16641765 4 80 12.5 13.0 12.8 0.3 84 chr2R 16641681 5` UTR gprs + chr2R 16641723 intron gprs + chr2R 16641765 intron gprs + chr2R_4_16640001 chr2R_16640001 RAL-237 243 chr2R 17066463 17066481 chr2R 17066549 17066567 5 86 4.0 4.5 4.2 1.0 104 chr2R 17066463 3` UTR,3` UTR CG6967 +,CG30460 - chr2R 17066515 3` UTR,3` UTR CG6967 +,CG30460 - chr2R 17066567 3` UTR CG30460 - chr2R_5_17065001 chr2R_17065001 RAL-237 244 chr2R 17098653 17098662 chr2R 17098742 17098750 4 89 3.0 2.5 2.8 1.1 97 chr2R 17098653 intergenic GstS1 - chr2R 17098702 intergenic GstS1 - chr2R 17098750 intergenic GstS1 - chr2R_4_17095001 chr2R_17095001 RAL-237 245 chr2R 17221903 17221927 chr2R 17222095 17222119 5 192 1.5 6.0 3.8 1.0 216 chr2R 17221903 intron mbl + chr2R 17222011 intron mbl + chr2R 17222119 intron mbl + chr2R_5_17220001 chr2R_17220001 RAL-237 246 chr2R 17459007 17459023 chr2R 17459091 17459108 4 85 2.5 3.0 2.8 1.1 101 chr2R 17459007 intron CG14478 + chr2R 17459058 intron CG14478 + chr2R 17459108 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-237 247 chr2R 17500688 17500691 chr2R 17500762 17500767 4 76 4.0 5.5 4.8 0.7 79 chr2R 17500688 intergenic not near genes chr2R 17500728 intergenic not near genes chr2R 17500767 intergenic not near genes chr2R_4_17500001 chr2R_17500001 RAL-237 248 chr2R 17512042 17512052 chr2R 17512144 17512163 5 108 6.0 4.5 5.2 0.8 121 chr2R 17512042 intron CG4847 + chr2R 17512102 intron CG4847 + chr2R 17512163 intron CG4847 + chr2R_5_17510001 chr2R_17510001 RAL-237 249 chr2R 17784028 17784056 chr2R 17784269 17784292 pogo 7 239 0.5 3.0 1.8 2.5 264 chr2R 17784028 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784292 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-237 250 chr2R 18045295 18045307 chr2R 18045383 18045395 5 88 8.0 6.0 7.0 0.6 100 chr2R 18045295 intergenic CG5770 - chr2R 18045345 intergenic CG5770 - chr2R 18045395 intergenic CG5770 - chr2R_5_18045001 chr2R_18045001 RAL-237 251 chr2R 18144844 18144873 chr2R 18144966 18144994 4 121 32.5 26.5 29.5 0.1 150 chr2R 18144844 exon pAbp + chr2R 18144919 intron pAbp + chr2R 18144994 exon pAbp + chr2R_4_18140001 chr2R_18140001 RAL-237 252 chr2R 18255696 18255721 chr2R 18255910 18255934 5 214 7.5 8.0 7.8 0.6 238 chr2R 18255696 intergenic not near genes chr2R 18255815 intergenic not near genes chr2R 18255934 intergenic not near genes chr2R_5_18255001 chr2R_18255001 RAL-237 253 chr2R 18358396 18358421 chr2R 18372606 18372633 roo 4 14212 0.5 1.0 0.8 2.2 14237 chr2R 18358396 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-237 254 chr2R 18455828 18455856 chr2R 18456116 18456147 5 289 5.0 8.5 6.8 0.6 319 chr2R 18455828 intergenic not near genes chr2R 18455988 intergenic not near genes chr2R 18456147 intergenic CG30116 - chr2R_5_18455001 chr2R_18455001 RAL-237 255 chr2R 18526593 18526624 chr2R 18526675 18526687 5 78 6.0 5.5 5.8 0.7 94 chr2R 18526593 intergenic CG43066 + chr2R 18526640 intergenic CG43066 + chr2R 18526687 intergenic CG43066 + chr2R_5_18525001 chr2R_18525001 RAL-237 256 chr2R 18575795 18575827 chr2R 18581983 18582014 3S18 8 6180 0.5 2.5 1.5 3.2 6219 chr2R 18575795 intron GEFmeso - chr2R 18578904 intron GEFmeso - chr2R 18582014 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 RAL-237 257 chr2R 18590866 18590899 chr2R 18600018 18600051 roo 7 9152 3.0 2.5 2.8 1.8 9185 chr2R 18590866 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600051 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-237 258 chr2R 18769730 18769738 chr2R 18769913 18769922 4 184 1.0 4.0 2.5 1.1 192 chr2R 18769730 intron Mctp + chr2R 18769826 intron Mctp + chr2R 18769922 intron Mctp + chr2R_4_18765001 chr2R_18765001 RAL-237 259 chr2R 19026051 19026060 chr2R 19026151 19026161 4 101 4.5 1.5 3.0 1.0 110 chr2R 19026051 intron 5-HT1B - chr2R 19026106 intron 5-HT1B - chr2R 19026161 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-237 260 chr2R 19234846 19234857 chr2R 19234928 19234939 4 82 4.5 3.0 3.8 0.8 93 chr2R 19234846 intron cora + chr2R 19234892 intron cora + chr2R 19234939 intron cora + chr2R_4_19230001 chr2R_19230001 RAL-237 261 chr2R 19284446 19284468 chr2R 19284527 19284549 5 81 5.0 6.0 5.5 0.8 103 chr2R 19284446 intergenic CG10476 -,CG11906 - chr2R 19284498 intergenic CG10476 - chr2R 19284549 intergenic CG10476 - chr2R_5_19280001 chr2R_19280001 RAL-237 262 chr2R 19300973 19300990 chr2R 19301056 19301073 4 82 6.5 8.5 7.5 0.5 100 chr2R 19300973 intron Tab2 + chr2R 19301023 intron Tab2 + chr2R 19301073 intron Tab2 + chr2R_4_19300001 chr2R_19300001 RAL-237 263 chr2R 19776593 19776630 chr2R 19779916 19779952 jockey 7 3323 1.5 0.5 1.0 3.5 3359 chr2R 19776593 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-237 264 chr2R 20178307 20178325 chr2R 20178400 20178417 5 90 11.5 8.0 9.8 0.5 110 chr2R 20178307 intergenic not near genes chr2R 20178362 intergenic not near genes chr2R 20178417 intergenic not near genes chr2R_5_20175001 chr2R_20175001 RAL-237 265 chr2R 20320743 20320768 chr2R 20320826 20320851 5 83 20.0 22.5 21.2 0.2 108 chr2R 20320743 intron CG8920 + chr2R 20320797 intron CG8920 + chr2R 20320851 intron CG8920 + chr2R_5_20320001 chr2R_20320001 RAL-237 266 chr2R 20357811 20357827 chr2R 20359099 20359120 4 1291 3.0 4.5 3.8 0.8 1309 chr2R 20357811 intergenic not near genes chr2R 20358466 intergenic not near genes chr2R 20359120 intergenic not near genes chr2R_4_20355001 chr2R_20355001 RAL-237 267 chr2R 20395173 20395189 chr2R 20395251 20395267 4 78 1.0 0.0 0.5 2.7 94 chr2R 20395173 intergenic not near genes chr2R 20395220 intergenic not near genes chr2R 20395267 intergenic not near genes chr2R_4_20395001 chr2R_20395001 RAL-237 268 chr2R 20511866 20511887 chr2R 20512577 20512598 4 711 5.5 4.0 4.8 0.7 732 chr2R 20511866 intergenic CR44649 +,CR44648 + chr2R 20512232 intergenic CR44649 +,CG13426 - chr2R 20512598 intergenic CG13426 - chr2R_4_20510001 chr2R_20510001 RAL-237 269 chr2R 20523060 20523071 chr2R 20523171 20523182 5 109 3.5 9.0 6.2 0.7 122 chr2R 20523060 intergenic not near genes chr2R 20523121 intergenic not near genes chr2R 20523182 intergenic not near genes chr2R_5_20520001 chr2R_20520001 RAL-237 270 chr2R 21109724 21109751 chr2R 21109804 21109830 4 79 4.5 6.0 5.2 0.6 106 chr2R 21109724 intron ktub + chr2R 21109777 intron ktub + chr2R 21109830 intron ktub + chr2R_4_21105001 chr2R_21105001 RAL-237 271 chr2R 21271145 21271172 chr2R 21271259 21271287 5 115 4.0 4.5 4.2 1.0 142 chr2R 21271145 intron Rgk3 + chr2R 21271216 intron Rgk3 + chr2R 21271287 intron Rgk3 + chr2R_5_21270001 chr2R_21270001 RAL-237 272 chr2R 21546789 21546819 chr2R 21546867 21546886 10 75 15.0 11.5 13.2 0.7 97 chr2R 21546789 intron Egfr + chr2R 21546838 intron Egfr + chr2R 21546886 intron Egfr + chr2R_10_21545001 chr2R_21545001 RAL-237 273 chr2R 21592846 21592857 chr2R 21592929 21592940 6 81 7.0 10.5 8.8 0.6 94 chr2R 21592846 intergenic not near genes chr2R 21592893 intergenic not near genes chr2R 21592940 intergenic not near genes chr2R_6_21590001 chr2R_21590001 RAL-237 274 chr2R 21605345 21605369 chr2R 21605502 21605524 7 157 6.5 2.0 4.2 1.3 179 chr2R 21605345 intergenic CG10433 - chr2R 21605434 intergenic CG10433 - chr2R 21605524 intergenic CG10433 - chr2R_7_21605001 chr2R_21605001 RAL-237 275 chr2R 21721579 21721608 chr2R 21721667 21721667 6 83 1.5 4.5 3.0 1.5 88 chr2R 21721579 intron LBR + chr2R 21721623 intron LBR + chr2R 21721667 intron LBR + chr2R_6_21720001 chr2R_21720001 RAL-237 276 chr2R 21809534 21809542 chr2R 21817772 21817782 roo 4 8240 1.0 1.5 1.2 1.8 8248 chr2R 21809534 intergenic not near genes chr2R 21813658 intergenic not near genes chr2R 21817782 intergenic not near genes chr2R_4_21810001 chr2R_21810001 RAL-237 277 chr2R 21919879 21919904 chr2R 21919966 21919970 5 83 1.5 2.5 2.0 1.7 91 chr2R 21919879 intron Fili + chr2R 21919924 intron Fili + chr2R 21919970 intron Fili + chr2R_5_21915001 chr2R_21915001 RAL-237 278 chr2R 22004305 22004317 chr2R 22004396 22004397 5 91 1.5 0.0 0.8 2.8 92 chr2R 22004305 intron CG34370 - chr2R 22004351 intron CG34370 - chr2R 22004397 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-237 279 chr2R 22072690 22072704 chr2R 22072775 22072789 5 85 1.0 4.0 2.5 1.4 99 chr2R 22072690 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072789 intron CG11474 - chr2R_5_22070001 chr2R_22070001 RAL-237 280 chr2R 22349693 22349721 chr2R 22351477 22351505 jockey 10 1783 3.0 2.5 2.8 2.6 1812 chr2R 22349693 intron Liprin-gamma - chr2R 22350599 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_10_22350001 chr2R_22350001 RAL-237 281 chr2R 22499854 22499880 chr2R 22499930 22499943 4 73 8.5 13.5 11.0 0.3 89 chr2R 22499854 intron px - chr2R 22499898 intron px - chr2R 22499943 intron px - chr2R_4_22495001 chr2R_22495001 RAL-237 282 chr2R 22525762 22525783 chr2R 22529321 22529342 jockey 7 3559 0.5 2.5 1.5 2.8 3580 chr2R 22525762 intron px - chr2R 22527552 intron px - chr2R 22529342 intron px - chr2R_7_22525001 chr2R_22525001 RAL-237 283 chr2R 22545626 22545640 chr2R 22545704 22545718 4 78 2.5 5.5 4.0 0.8 92 chr2R 22545626 intron px - chr2R 22545672 intron px - chr2R 22545718 intron px - chr2R_4_22545001 chr2R_22545001 RAL-237 284 chr2R 22579609 22579630 chr2R 22579695 22579716 4 85 7.5 5.0 6.2 0.6 107 chr2R 22579609 intron dnr1 - chr2R 22579662 intron dnr1 - chr2R 22579716 intron dnr1 - chr2R_4_22575001 chr2R_22575001 RAL-237 285 chr2R 22679755 22679784 chr2R 22679829 22679859 11 71 9.0 9.0 9.0 1.1 104 chr2R 22679755 intergenic not near genes chr2R 22679807 intergenic not near genes chr2R 22679859 intergenic not near genes chr2R_11_22675001 chr2R_22675001 RAL-237 286 chr2R 22756551 22756574 chr2R 22756628 22756651 7 77 4.0 4.5 4.2 1.3 100 chr2R 22756551 intron,intron CG42260 -,CR30267 + chr2R 22756601 intron,intron CG42260 -,CR30267 + chr2R 22756651 intron,intron CG42260 -,CR30267 + chr2R_7_22755001 chr2R_22755001 RAL-237 287 chr2R 22774963 22774998 chr2R 22775379 22775416 jockey 6 418 3.0 3.0 3.0 1.5 453 chr2R 22774963 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-237 288 chr2R 22907407 22907433 chr2R 22907500 22907517 8 91 9.5 12.0 10.8 0.7 110 chr2R 22907407 intron nahoda + chr2R 22907462 intron nahoda + chr2R 22907517 intron nahoda + chr2R_8_22905001 chr2R_22905001 RAL-237 289 chr2R 22945057 22945077 chr2R 22945171 22945191 4 114 7.0 4.0 5.5 0.6 134 chr2R 22945057 exon CG42694 + chr2R 22945124 3` UTR CG42694 + chr2R 22945191 intergenic CG42694 + chr2R_4_22945001 chr2R_22945001 RAL-237 290 chr2R 22991632 22991658 chr2R 22991723 22991749 7 92 3.5 0.5 2.0 2.3 117 chr2R 22991632 intron twi + chr2R 22991690 intron twi + chr2R 22991749 intron twi + chr2R_7_22990001 chr2R_22990001 RAL-237 291 chr2R 23040023 23040051 chr2R 23040105 23040133 6 82 7.5 5.5 6.5 0.8 110 chr2R 23040023 intron,intron twi +,CG42741 - chr2R 23040078 intron,intron twi +,CG42741 - chr2R 23040133 intron,intron twi +,CG42741 - chr2R_6_23040001 chr2R_23040001 RAL-237 292 chr2R 23052654 23052689 chr2R 23052730 23052765 6 76 3.5 5.5 4.5 1.1 111 chr2R 23052654 intergenic not near genes chr2R 23052710 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-237 293 chr2R 23054004 23054028 chr2R 23054076 23054106 6 76 5.0 4.0 4.5 1.1 102 chr2R 23054004 intergenic not near genes chr2R 23054055 intergenic not near genes chr2R 23054106 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-237 294 chr2R 23158351 23158356 chr2R 23158428 23158430 4 76 18.5 15.0 16.8 0.2 79 chr2R 23158351 intron CG9899 + chr2R 23158390 intron CG9899 + chr2R 23158430 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-237 295 chr2R 23175048 23175068 chr2R 23175117 23175145 6 71 6.0 6.5 6.2 0.8 97 chr2R 23175048 intron CG34371 - chr2R 23175096 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_6_23175001 chr2R_23175001 RAL-237 296 chr2R 23204822 23204846 chr2R 23204942 23204966 4 120 0.0 0.0 0.0 4.0 144 chr2R 23204822 intergenic not near genes chr2R 23204894 intergenic not near genes chr2R 23204966 intergenic not near genes chr2R_4_23200001 chr2R_23200001 RAL-237 297 chr2R 23402607 23402633 chr2R 23407683 23407709 flea 4 5076 0.0 3.0 1.5 1.6 5102 chr2R 23402607 intergenic CG3520 - chr2R 23405158 intergenic not near genes chr2R 23407709 intergenic not near genes chr2R_4_23405001 chr2R_23405001 RAL-237 298 chr2R 23411066 23411084 chr2R 23411148 23411166 4 82 1.5 2.5 2.0 1.3 100 chr2R 23411066 intergenic not near genes chr2R 23411116 intergenic not near genes chr2R 23411166 intergenic not near genes chr2R_4_23410001 chr2R_23410001 RAL-237 299 chr2R 23487450 23487476 chr2R 23487532 23487558 16 81 2.0 2.0 2.0 5.3 108 chr2R 23487450 intron CG43795 + chr2R 23487504 intron CG43795 + chr2R 23487558 intron CG43795 + chr2R_16_23485001 chr2R_23485001 RAL-237 300 chr2R 23529575 23529584 chr2R 23537151 23537158 412 5 7575 15.5 10.0 12.8 0.4 7583 chr2R 23529575 intron bw - chr2R 23533366 intron bw - chr2R 23537158 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-237 301 chr2R 23529585 23529606 chr2R 23537149 23537172 412 12 7570 8.0 8.0 8.0 1.3 7587 chr2R 23529585 intron bw - chr2R 23533378 intron bw - chr2R 23537172 exon bw - chr2R_12_23530001 chr2R_23530001 RAL-237 302 chr2R 23607041 23607185 chr2R 23607119 23607278 5 85 14.5 13.0 13.8 0.3 237 chr2R 23607041 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607278 intron CG17664 - chr2R_5_23605001 chr2R_23605001 RAL-237 303 chr2R 23726233 23726250 chr2R 23726322 23726340 4 89 4.0 5.0 4.5 0.7 107 chr2R 23726233 intron Sesn + chr2R 23726286 intron Sesn + chr2R 23726340 intron Sesn + chr2R_4_23725001 chr2R_23725001 RAL-237 304 chr2R 23986512 23986544 chr2R 23986592 23986624 16 80 2.0 3.0 2.5 4.6 112 chr2R 23986512 intron Phm - chr2R 23986568 intron Phm - chr2R 23986624 intron,5` UTR Phm -,CG30178 + chr2R_16_23985001 chr2R_23985001 RAL-237 305 chr2R 24008416 24008444 chr2R 24008502 24008530 9 85 21.0 23.0 22.0 0.4 114 chr2R 24008416 intron Unc-89 - chr2R 24008473 intron Unc-89 - chr2R 24008530 intron Unc-89 - chr2R_9_24005001 chr2R_24005001 RAL-237 306 chr2R 24031382 24031409 chr2R 24031466 24031493 12 84 5.0 3.5 4.2 2.3 111 chr2R 24031382 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-237 307 chr2R 24147079 24147094 chr2R 24154646 24154672 412 4 7575 6.0 4.5 5.2 0.6 7593 chr2R 24147079 intron Dat + chr2R 24150876 intron Dat + chr2R 24154672 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-237 308 chr2R 24228403 24228425 chr2R 24228484 24228504 4 80 16.0 12.0 14.0 0.3 101 chr2R 24228403 intron CG30419 - chr2R 24228454 intron CG30419 - chr2R 24228504 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-237 309 chr2R 24326526 24326543 chr2R 24326602 24326619 4 76 5.5 5.0 5.2 0.6 93 chr2R 24326526 intron CR44810 + chr2R 24326572 intron CR44810 + chr2R 24326619 intron CR44810 + chr2R_4_24325001 chr2R_24325001 RAL-237 310 chr2R 24351415 24351440 chr2R 24351496 24351520 6 80 6.5 6.5 6.5 0.8 105 chr2R 24351415 intron bs + chr2R 24351468 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_6_24350001 chr2R_24350001 RAL-237 311 chr2R 24353428 24353462 chr2R 24361790 24361824 roo 12 8361 2.0 5.0 3.5 2.7 8396 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-237 312 chr2R 24383831 24383857 chr2R 24383912 24383938 10 81 8.0 13.0 10.5 0.9 107 chr2R 24383831 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_10_24380001 chr2R_24380001 RAL-237 313 chr2R 24509312 24509340 chr2R 24509397 24509425 10 84 4.0 7.0 5.5 1.5 113 chr2R 24509312 intergenic Letm1 - chr2R 24509368 intergenic Letm1 - chr2R 24509425 intergenic Letm1 - chr2R_10_24505001 chr2R_24505001 RAL-237 314 chr2R 24538272 24538294 chr2R 24538360 24538381 8 87 11.0 8.5 9.8 0.7 109 chr2R 24538272 intron,intron CG4622 -,ITP + chr2R 24538326 intron,intron CG4622 -,ITP + chr2R 24538381 intron,intron CG4622 -,ITP + chr2R_8_24535001 chr2R_24535001 RAL-237 315 chr2R 24647596 24647617 chr2R 24655153 24655172 412 4 7556 2.0 2.5 2.2 1.2 7576 chr2R 24647596 intergenic not near genes chr2R 24651384 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-237 316 chr2R 24727883 24727918 chr2R 24735391 24735424 mdg1 15 7506 3.5 4.0 3.8 3.1 7541 chr2R 24727883 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_15_24730001 chr2R_24730001 RAL-237 317 chr2R 24739755 24739776 chr2R 24739836 24739845 8 78 12.0 10.5 11.2 0.7 90 chr2R 24739755 intergenic CR44828 - chr2R 24739800 intergenic CR44828 - chr2R 24739845 intergenic CR44828 - chr2R_8_24735001 chr2R_24735001 RAL-237 318 chr2R 24763608 24763644 chr2R 24765584 24765614 G2 28 1974 8.0 8.5 8.2 3.0 2006 chr2R 24763608 exon CG3894 + chr2R 24764611 intron CG3894 + chr2R 24765614 exon CG3894 + chr2R_28_24760001 chr2R_24760001 RAL-237 319 chr2R 24848653 24848687 chr2R 24848737 24848771 9 84 5.0 10.5 7.8 1.0 118 chr2R 24848653 intergenic CG3650 + chr2R 24848712 intergenic CG3650 + chr2R 24848771 intergenic CG3650 + chr2R_9_24845001 chr2R_24845001 RAL-237 320 chr2R 24884052 24884075 chr2R 24884132 24884157 9 82 1.5 0.5 1.0 4.5 105 chr2R 24884052 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884157 intron NKAIN + chr2R_9_24880001 chr2R_24880001 RAL-237 321 chr2R 25036840 25036873 chr2R 25036917 25036950 7 77 7.5 6.0 6.8 0.9 110 chr2R 25036840 intron Nplp1 + chr2R 25036895 exon Nplp1 + chr2R 25036950 exon Nplp1 + chr2R_7_25035001 chr2R_25035001 RAL-237 322 chr3L 105744 105763 chr3L 105839 105858 5 95 1.0 1.5 1.2 2.3 114 chr3L 105744 intergenic not near genes chr3L 105801 intergenic not near genes chr3L 105858 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-237 323 chr3L 108949 108979 chr3L 109028 109032 5 73 0.5 0.5 0.5 3.3 83 chr3L 108949 intergenic not near genes chr3L 108990 intergenic not near genes chr3L 109032 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-237 324 chr3L 402691 402716 chr3L 409740 409764 297 8 7051 3.5 2.5 3.0 2.0 7073 chr3L 402691 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409764 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-237 325 chr3L 445558 445584 chr3L 445625 445660 8 74 2.5 0.0 1.2 3.6 102 chr3L 445558 exon klar - chr3L 445609 intron klar - chr3L 445660 intron klar - chr3L_8_445001 chr3L_445001 RAL-237 326 chr3L 566797 566819 chr3L 567150 567172 5 353 1.0 2.0 1.5 2.0 375 chr3L 566797 intron hipk + chr3L 566984 intron hipk + chr3L 567172 intron hipk + chr3L_5_565001 chr3L_565001 RAL-237 327 chr3L 695168 695176 chr3L 695400 695405 4 231 3.0 0.0 1.5 1.6 237 chr3L 695168 intron CG13894 - chr3L 695286 intron CG13894 - chr3L 695405 intron CG13894 - chr3L_4_695001 chr3L_695001 RAL-237 328 chr3L 901429 901454 chr3L 901504 901536 4 75 1.5 0.5 1.0 2.0 107 chr3L 901429 intergenic not near genes chr3L 901482 intergenic not near genes chr3L 901536 intergenic not near genes chr3L_4_900001 chr3L_900001 RAL-237 329 chr3L 925175 925207 chr3L 932601 932633 mdg1 8 7426 1.0 1.5 1.2 3.6 7458 chr3L 925175 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-237 330 chr3L 933922 933939 chr3L 934024 934042 4 103 1.0 4.5 2.8 1.1 120 chr3L 933922 intron Glut1 + chr3L 933982 intron Glut1 + chr3L 934042 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-237 331 chr3L 939771 939791 chr3L 940890 940912 jockey 9 1120 4.5 3.5 4.0 1.8 1141 chr3L 939771 intron Glut1 + chr3L 940342 intron Glut1 + chr3L 940912 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-237 332 chr3L 970184 970212 chr3L 970265 970293 4 80 3.0 0.5 1.8 1.4 109 chr3L 970184 intron Glut1 + chr3L 970238 intron Glut1 + chr3L 970293 intron Glut1 + chr3L_4_970001 chr3L_970001 RAL-237 333 chr3L 1031604 1031612 chr3L 1031677 1031685 4 74 2.5 7.5 5.0 0.7 81 chr3L 1031604 intron trio - chr3L 1031644 intron trio - chr3L 1031685 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-237 334 chr3L 1040548 1040581 chr3L 1040632 1040665 9 84 5.5 4.5 5.0 1.5 117 chr3L 1040548 intron bab1 - chr3L 1040606 intron bab1 - chr3L 1040665 intron bab1 - chr3L_9_1040001 chr3L_1040001 RAL-237 335 chr3L 1109637 1109660 chr3L 1109724 1109737 11 86 3.0 3.5 3.2 2.6 100 chr3L 1109637 intergenic not near genes chr3L 1109687 intergenic not near genes chr3L 1109737 intergenic not near genes chr3L_11_1105001 chr3L_1105001 RAL-237 336 chr3L 1189629 1189644 chr3L 1189714 1189730 5 86 3.0 2.5 2.8 1.3 101 chr3L 1189629 5` UTR CG13912 + chr3L 1189680 5` UTR CG13912 + chr3L 1189730 5` UTR CG13912 + chr3L_5_1185001 chr3L_1185001 RAL-237 337 chr3L 1219595 1219624 chr3L 1227328 1227357 412 12 7732 3.0 6.0 4.5 2.2 7762 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-237 338 chr3L 1310984 1311010 chr3L 1315844 1315870 13 4863 48.0 36.0 42.0 0.3 4886 chr3L 1310984 exon CG2469 + chr3L 1313427 intergenic CG9186 -,CG9153 + chr3L 1315870 exon CG9153 + chr3L_13_1310001 chr3L_1310001 RAL-237 339 chr3L 1347156 1347185 chr3L 1347241 1347270 16 84 4.5 3.5 4.0 3.2 114 chr3L 1347156 intron Ptp61F - chr3L 1347213 intron Ptp61F - chr3L 1347270 intron Ptp61F - chr3L_16_1345001 chr3L_1345001 RAL-237 340 chr3L 1463416 1463449 chr3L 1463497 1463530 14 79 3.0 3.5 3.2 3.3 114 chr3L 1463416 intron Ptp61F - chr3L 1463473 intron Ptp61F - chr3L 1463530 intron Ptp61F - chr3L_14_1460001 chr3L_1460001 RAL-237 341 chr3L 1505995 1506025 chr3L 1513592 1513622 17.6 8 7597 3.0 2.0 2.5 2.3 7627 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513622 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-237 342 chr3L 1673589 1673592 chr3L 1673672 1673674 6 82 7.0 6.0 6.5 0.8 85 chr3L 1673589 intergenic not near genes chr3L 1673632 intergenic not near genes chr3L 1673674 intergenic not near genes chr3L_6_1670001 chr3L_1670001 RAL-237 343 chr3L 1805697 1805712 chr3L 1805871 1805886 7 174 3.0 1.5 2.2 2.2 189 chr3L 1805697 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805886 intron CG42676 + chr3L_7_1805001 chr3L_1805001 RAL-237 344 chr3L 1922452 1922472 chr3L 1922520 1922532 4 68 4.0 10.5 7.2 0.5 80 chr3L 1922452 intron Dbx + chr3L 1922492 intron Dbx + chr3L 1922532 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-237 345 chr3L 1924962 1924976 chr3L 1925100 1925114 6 138 7.5 4.5 6.0 0.9 152 chr3L 1924962 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925114 intron Dbx + chr3L_6_1925001 chr3L_1925001 RAL-237 346 chr3L 2139210 2139233 chr3L 2139291 2139314 7 81 1.5 4.0 2.8 1.8 104 chr3L 2139210 intron zormin - chr3L 2139262 intron zormin - chr3L 2139314 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-237 347 chr3L 2187609 2187635 chr3L 2187687 2187717 10 81 5.0 0.5 2.8 2.6 108 chr3L 2187609 exon CG13810 + chr3L 2187663 3` UTR CG13810 + chr3L 2187717 intergenic CG13810 + chr3L_10_2185001 chr3L_2185001 RAL-237 348 chr3L 2218476 2218510 chr3L 2218552 2218586 18 73 1.0 3.0 2.0 6.0 110 chr3L 2218476 intergenic not near genes chr3L 2218531 intergenic not near genes chr3L 2218586 intergenic not near genes chr3L_18_2215001 chr3L_2215001 RAL-237 349 chr3L 2308017 2308032 chr3L 2308118 2308138 4 102 0.5 1.5 1.0 2.0 121 chr3L 2308017 intergenic not near genes chr3L 2308078 intergenic not near genes chr3L 2308138 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-237 350 chr3L 2447502 2447535 chr3L 2456658 2456691 roo 7 9156 2.0 4.5 3.2 1.7 9189 chr3L 2447502 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456691 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-237 351 chr3L 2476067 2476093 chr3L 2476301 2476325 7 233 1.0 3.0 2.0 2.3 258 chr3L 2476067 intron CG45186 + chr3L 2476196 intron CG45186 + chr3L 2476325 intron,3` UTR CG45186 +,Cyp4d20 - chr3L_7_2475001 chr3L_2475001 RAL-237 352 chr3L 2479004 2479032 chr3L 2479101 2479128 8 96 2.5 4.0 3.2 1.9 124 chr3L 2479004 intron CG45186 + chr3L 2479066 intron CG45186 + chr3L 2479128 intron CG45186 + chr3L_8_2475001 chr3L_2475001 RAL-237 353 chr3L 2590880 2590913 chr3L 2590976 2591012 9 97 1.5 0.0 0.8 5.0 132 chr3L 2590880 intron dos + chr3L 2590946 intron dos + chr3L 2591012 intron dos + chr3L_9_2590001 chr3L_2590001 RAL-237 354 chr3L 2626413 2626438 chr3L 2626537 2626562 5 124 2.5 1.0 1.8 1.8 149 chr3L 2626413 intron Pxn - chr3L 2626488 intron Pxn - chr3L 2626562 intron Pxn - chr3L_5_2625001 chr3L_2625001 RAL-237 355 chr3L 2683944 2683964 chr3L 2684021 2684041 5 77 2.0 1.5 1.8 1.8 97 chr3L 2683944 intron Fife - chr3L 2683992 intron Fife - chr3L 2684041 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-237 356 chr3L 3061286 3061302 chr3L 3069867 3069882 Tirant 4 8580 7.0 5.0 6.0 0.6 8596 chr3L 3061286 intron CG32486 - chr3L 3065584 intron CG32486 - chr3L 3069882 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-237 357 chr3L 3102815 3102848 chr3L 3102901 3102934 4 86 1.0 2.0 1.5 1.6 119 chr3L 3102815 intron Cht7 - chr3L 3102874 intron Cht7 - chr3L 3102934 intron Cht7 - chr3L_4_3100001 chr3L_3100001 RAL-237 358 chr3L 3104865 3104902 chr3L 3104947 3104978 8 79 0.0 2.0 1.0 4.0 113 chr3L 3104865 intron Cht7 - chr3L 3104922 intron Cht7 - chr3L 3104978 intron Cht7 - chr3L_8_3100001 chr3L_3100001 RAL-237 359 chr3L 3178730 3178739 chr3L 3178810 3178822 6 82 6.0 0.0 3.0 1.5 92 chr3L 3178730 intergenic CG14964 -,Girdin + chr3L 3178776 intergenic Girdin +,CG14964 - chr3L 3178822 intergenic Girdin +,CG14964 - chr3L_6_3175001 chr3L_3175001 RAL-237 360 chr3L 3281439 3281469 chr3L 3281935 3281964 Doc 4 494 1.5 0.5 1.0 2.0 525 chr3L 3281439 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281964 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-237 361 chr3L 3310293 3310325 chr3L 3310372 3310404 5 79 1.5 0.5 1.0 2.5 111 chr3L 3310293 intron ZnT63C + chr3L 3310348 intron ZnT63C + chr3L 3310404 intron ZnT63C + chr3L_5_3310001 chr3L_3310001 RAL-237 362 chr3L 3475097 3475113 chr3L 3475516 3475556 jockey 4 437 0.5 0.5 0.5 2.7 459 chr3L 3475097 intron CG42324 + chr3L 3475326 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-237 363 chr3L 3766737 3766759 chr3L 3766823 3766844 5 86 1.0 0.5 0.8 2.8 107 chr3L 3766737 intron CG32264 - chr3L 3766790 intron CG32264 - chr3L 3766844 intron CG32264 - chr3L_5_3765001 chr3L_3765001 RAL-237 364 chr3L 3921393 3921425 chr3L 3921657 3921689 9 264 1.0 1.5 1.2 4.1 296 chr3L 3921393 intron Eip63F-1 - chr3L 3921541 intron Eip63F-1 - chr3L 3921689 intron Eip63F-1 - chr3L_9_3920001 chr3L_3920001 RAL-237 365 chr3L 4162269 4162283 chr3L 4162381 4162395 5 112 3.5 4.0 3.8 1.0 126 chr3L 4162269 exon mas - chr3L 4162332 intron mas - chr3L 4162395 exon mas - chr3L_5_4160001 chr3L_4160001 RAL-237 366 chr3L 4162290 4162301 chr3L 4162376 4162384 5 96 1.0 3.5 2.2 1.6 94 chr3L 4162290 exon mas - chr3L 4162337 intron mas - chr3L 4162384 exon mas - chr3L_5_4160001 chr3L_4160001 RAL-237 367 chr3L 4195137 4195172 chr3L 4195241 4195253 6 100 1.5 0.5 1.0 3.0 116 chr3L 4195137 exon CG43367 + chr3L 4195195 intron CG43367 + chr3L 4195253 intron CG43367 + chr3L_6_4195001 chr3L_4195001 RAL-237 368 chr3L 4748704 4748708 chr3L 4748792 4748799 4 90 5.0 1.5 3.2 1.0 95 chr3L 4748704 intron RhoGEF64C + chr3L 4748752 intron RhoGEF64C + chr3L 4748799 intron RhoGEF64C + chr3L_4_4745001 chr3L_4745001 RAL-237 369 chr3L 4789473 4789503 chr3L 4789558 4789589 6 85 5.5 8.5 7.0 0.8 116 chr3L 4789473 exon RhoGEF64C + chr3L 4789531 exon RhoGEF64C + chr3L 4789589 exon RhoGEF64C + chr3L_6_4785001 chr3L_4785001 RAL-237 370 chr3L 4840409 4840421 chr3L 4840518 4840529 4 108 2.0 0.0 1.0 2.0 120 chr3L 4840409 intergenic CG13707 - chr3L 4840469 intergenic CG13707 - chr3L 4840529 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-237 371 chr3L 4858301 4858333 chr3L 4858391 4858395 7 85 3.0 3.0 3.0 1.8 94 chr3L 4858301 intergenic not near genes chr3L 4858348 intergenic not near genes chr3L 4858395 intergenic not near genes chr3L_7_4855001 chr3L_4855001 RAL-237 372 chr3L 4901127 4901149 chr3L 4907317 4907339 diver 5 6190 2.5 0.0 1.2 2.3 6212 chr3L 4901127 intergenic CG13704 + chr3L 4904233 intergenic not near genes chr3L 4907339 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-237 373 chr3L 4907978 4907988 chr3L 4908054 4908064 5 76 1.0 0.5 0.8 2.8 86 chr3L 4907978 intergenic not near genes chr3L 4908021 intergenic not near genes chr3L 4908064 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-237 374 chr3L 4990747 4990778 chr3L 4990860 4990879 5 111 2.0 0.0 1.0 2.5 132 chr3L 4990747 intron Con - chr3L 4990813 intron Con - chr3L 4990879 intron Con - chr3L_5_4990001 chr3L_4990001 RAL-237 375 chr3L 5212238 5212270 chr3L 5212321 5212353 8 82 3.0 2.0 2.5 2.3 115 chr3L 5212238 intron shep - chr3L 5212296 intron shep - chr3L 5212353 intron shep - chr3L_8_5210001 chr3L_5210001 RAL-237 376 chr3L 5482943 5483095 chr3L 5483150 5483187 9 126 0.5 1.0 0.8 5.0 244 chr3L 5482943 exon CG4835 + chr3L 5483065 exon CG4835 + chr3L 5483187 exon CG4835 + chr3L_9_5480001 chr3L_5480001 RAL-237 377 chr3L 5514960 5514976 chr3L 5515043 5515059 6 83 2.0 4.5 3.2 1.4 99 chr3L 5514960 intron Lkr - chr3L 5515010 intron Lkr - chr3L 5515059 intron Lkr - chr3L_6_5515001 chr3L_5515001 RAL-237 378 chr3L 6040281 6040300 chr3L 6040360 6040380 5 80 2.0 0.0 1.0 2.5 99 chr3L 6040281 intergenic Jon65Aiv + chr3L 6040330 intergenic Jon65Aiv + chr3L 6040380 intergenic Jon65Aiv + chr3L_5_6040001 chr3L_6040001 RAL-237 379 chr3L 6040369 6040380 chr3L 6042724 6042736 Doc 7 2356 0.0 3.0 1.5 2.8 2367 chr3L 6040369 intergenic Jon65Aiv + chr3L 6041552 intergenic not near genes chr3L 6042736 intergenic not near genes chr3L_7_6040001 chr3L_6040001 RAL-237 380 chr3L 6052652 6052674 chr3L 6052736 6052742 8 81 11.5 12.5 12.0 0.6 90 chr3L 6052652 exon Jon65Aii + chr3L 6052697 intron Jon65Aii + chr3L 6052742 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-237 381 chr3L 6159870 6159893 chr3L 6159960 6159983 9 90 4.0 0.5 2.2 2.8 113 chr3L 6159870 intergenic not near genes chr3L 6159926 intergenic not near genes chr3L 6159983 intergenic not near genes chr3L_9_6155001 chr3L_6155001 RAL-237 382 chr3L 6261161 6261195 chr3L 6261241 6261275 6 80 0.5 2.5 1.5 2.4 114 chr3L 6261161 intron ImpL3 - chr3L 6261218 intron ImpL3 - chr3L 6261275 intron ImpL3 - chr3L_6_6260001 chr3L_6260001 RAL-237 383 chr3L 6573662 6573688 chr3L 6573757 6573791 7 101 1.0 4.0 2.5 2.0 129 chr3L 6573662 intron,intron CG18769 +,jv - chr3L 6573726 intron,intron CG18769 +,jv - chr3L 6573791 intron,intron CG18769 +,jv - chr3L_7_6570001 chr3L_6570001 RAL-237 384 chr3L 6994886 6994914 chr3L 6995497 6995525 BS 4 610 0.0 3.0 1.5 1.6 639 chr3L 6994886 intergenic bin + chr3L 6995206 intergenic not near genes chr3L 6995525 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-237 385 chr3L 7150876 7150894 chr3L 7150952 7150970 4 76 2.0 0.0 1.0 2.0 94 chr3L 7150876 intron corn - chr3L 7150923 intron corn - chr3L 7150970 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-237 386 chr3L 7244949 7244962 chr3L 7245041 7245054 4 92 4.5 2.5 3.5 0.9 105 chr3L 7244949 exon mei-P22 + chr3L 7245002 exon mei-P22 + chr3L 7245054 exon mei-P22 + chr3L_4_7245001 chr3L_7245001 RAL-237 387 chr3L 7284429 7284456 chr3L 7284502 7284527 4 74 0.0 0.0 0.0 4.0 98 chr3L 7284429 intron unc-13-4A - chr3L 7284478 intron unc-13-4A - chr3L 7284527 intron unc-13-4A - chr3L_4_7280001 chr3L_7280001 RAL-237 388 chr3L 7328962 7328976 chr3L 7329043 7329057 6 80 1.0 2.5 1.8 2.1 95 chr3L 7328962 intergenic CG8602 -,CG42307 +,mus312 + chr3L 7329010 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329057 intergenic CG42307 +,mus312 +,CG8602 - chr3L_6_7325001 chr3L_7325001 RAL-237 389 chr3L 7371177 7371202 chr3L 7371260 7371286 6 82 1.5 2.0 1.8 2.1 109 chr3L 7371177 intron akirin + chr3L 7371232 intron akirin + chr3L 7371286 intron akirin + chr3L_6_7370001 chr3L_7370001 RAL-237 390 chr3L 7403629 7403643 chr3L 7403706 7403720 4 77 0.5 3.0 1.8 1.4 91 chr3L 7403629 intron CG8560 - chr3L 7403674 intron CG8560 - chr3L 7403720 intron CG8560 - chr3L_4_7400001 chr3L_7400001 RAL-237 391 chr3L 7444023 7444048 chr3L 7444121 7444145 4 98 1.5 0.0 0.8 2.2 122 chr3L 7444023 intron CG42458 + chr3L 7444084 intron CG42458 + chr3L 7444145 intron CG42458 + chr3L_4_7440001 chr3L_7440001 RAL-237 392 chr3L 7488874 7488881 chr3L 7488954 7488954 5 79 1.0 2.5 1.8 1.8 80 chr3L 7488874 intergenic not near genes chr3L 7488914 intergenic not near genes chr3L 7488954 intergenic not near genes chr3L_5_7485001 chr3L_7485001 RAL-237 393 chr3L 7749470 7749471 chr3L 11777678 11777678 8 4028208 6.0 23.0 14.5 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_9760001 chr3L_9760001 RAL-237 394 chr3L 7793722 7793737 chr3L 7800774 7800789 297 4 7052 1.5 1.5 1.5 1.6 7067 chr3L 7793722 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800789 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-237 395 chr3L 7886523 7886538 chr3L 7889041 7889056 Stalker4 4 2518 0.0 0.5 0.2 3.3 2533 chr3L 7886523 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889056 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-237 396 chr3L 8395843 8395865 chr3L 8395939 8395961 5 95 2.5 5.0 3.8 1.0 118 chr3L 8395843 intergenic CG7120 + chr3L 8395902 intergenic CG7120 + chr3L 8395961 intergenic CG7120 + chr3L_5_8395001 chr3L_8395001 RAL-237 397 chr3L 8481772 8481806 chr3L 8490929 8490965 roo 8 9155 3.0 3.5 3.2 1.9 9193 chr3L 8481772 intron CG43163 - chr3L 8486368 intron CG43163 - chr3L 8490965 intron CG43163 - chr3L_8_8485001 chr3L_8485001 RAL-237 398 chr3L 8644628 8644660 chr3L 8644704 8644729 8 70 0.5 3.0 1.8 2.9 101 chr3L 8644628 intergenic CG13305 - chr3L 8644678 intergenic CG13305 - chr3L 8644729 intergenic CG13305 - chr3L_8_8640001 chr3L_8640001 RAL-237 399 chr3L 8782133 8782151 chr3L 8782259 8782270 4 124 1.5 4.0 2.8 1.1 137 chr3L 8782133 intron Fhos + chr3L 8782202 intron Fhos + chr3L 8782270 intron Fhos + chr3L_4_8780001 chr3L_8780001 RAL-237 400 chr3L 8849209 8849232 chr3L 8849289 8849311 4 80 0.5 0.5 0.5 2.7 102 chr3L 8849209 intron dally + chr3L 8849260 intron dally + chr3L 8849311 intron dally + chr3L_4_8845001 chr3L_8845001 RAL-237 401 chr3L 8949494 8949507 chr3L 8949574 8949588 5 80 0.0 6.5 3.2 1.2 94 chr3L 8949494 intron,intron CG43783 -,orb2 - chr3L 8949541 intron,intron CG43783 -,orb2 - chr3L 8949588 intron,intron CG43783 -,orb2 - chr3L_5_8945001 chr3L_8945001 RAL-237 402 chr3L 9003948 9003978 chr3L 9004033 9004063 12 85 2.0 2.0 2.0 4.0 115 chr3L 9003948 intergenic not near genes chr3L 9004006 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_12_9000001 chr3L_9000001 RAL-237 403 chr3L 9061129 9061152 chr3L 9061237 9061243 8 106 6.0 2.5 4.2 1.5 114 chr3L 9061129 intron Argk - chr3L 9061186 intron Argk - chr3L 9061243 intron Argk - chr3L_8_9060001 chr3L_9060001 RAL-237 404 chr3L 9076930 9076956 chr3L 9084490 9084514 412 6 7559 3.5 1.5 2.5 1.7 7584 chr3L 9076930 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084514 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-237 405 chr3L 9130564 9130581 chr3L 9134325 9134342 412 4 3761 5.5 5.5 5.5 0.6 3778 chr3L 9130564 intergenic bol - chr3L 9132453 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-237 406 chr3L 9195835 9195864 chr3L 9195912 9195941 5 75 0.5 1.5 1.0 2.5 106 chr3L 9195835 intergenic not near genes chr3L 9195888 intergenic not near genes chr3L 9195941 intergenic not near genes chr3L_5_9195001 chr3L_9195001 RAL-237 407 chr3L 9202436 9202466 chr3L 9202631 9202661 4 195 1.0 0.5 0.8 2.2 225 chr3L 9202436 intergenic not near genes chr3L 9202548 intergenic not near genes chr3L 9202661 intergenic Slc45-1 - chr3L_4_9200001 chr3L_9200001 RAL-237 408 chr3L 9219253 9219276 chr3L 9219920 9219948 jockey 5 669 1.5 2.0 1.8 1.8 695 chr3L 9219253 intergenic not near genes chr3L 9219600 intergenic not near genes chr3L 9219948 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-237 409 chr3L 9270621 9270649 chr3L 9278376 9278402 roo 5 7753 2.0 4.5 3.2 1.2 7781 chr3L 9270621 intron GluRIB + chr3L 9274512 intron GluRIB + chr3L 9278402 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-237 410 chr3L 9307795 9307795 chr3L 18417066 18417066 4 9109271 1.5 6.5 4.0 0.8 9109271 chr3L 9307795 intergenic not near genes chr3L 13862430 intron CG8745 - chr3L 18417066 intergenic not near genes chr3L_4_13860001 chr3L_13860001 RAL-237 411 chr3L 9313026 9313027 chr3L 11777678 11777678 5 2464651 3.5 23.0 13.2 0.4 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_10545001 chr3L_10545001 RAL-237 412 chr3L 9501699 9501729 chr3L 9502185 9502215 roo 4 485 0.0 1.0 0.5 2.7 516 chr3L 9501699 intron path - chr3L 9501957 intron path - chr3L 9502215 intron path - chr3L_4_9500001 chr3L_9500001 RAL-237 413 chr3L 9563371 9563401 chr3L 9563534 9563564 4 161 0.5 2.0 1.2 1.8 193 chr3L 9563371 intron CG42673 + chr3L 9563468 intron CG42673 + chr3L 9563564 intron CG42673 + chr3L_4_9560001 chr3L_9560001 RAL-237 414 chr3L 9575923 9575938 chr3L 9580992 9581015 jockey 5 5076 1.0 1.5 1.2 2.3 5092 chr3L 9575923 intron CG42673 + chr3L 9578469 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-237 415 chr3L 9589346 9589380 chr3L 9589500 9589534 13 153 1.5 1.5 1.5 5.2 188 chr3L 9589346 intron CG42673 + chr3L 9589440 intron CG42673 + chr3L 9589534 intron CG42673 + chr3L_13_9585001 chr3L_9585001 RAL-237 416 chr3L 9596771 9596802 chr3L 9596848 9596870 15 75 0.5 3.5 2.0 5.0 99 chr3L 9596771 intergenic CG42673 + chr3L 9596820 intergenic CG42673 + chr3L 9596870 intergenic CG42673 + chr3L_15_9595001 chr3L_9595001 RAL-237 417 chr3L 9613894 9613912 chr3L 9613981 9613999 4 86 3.5 0.5 2.0 1.3 105 chr3L 9613894 3` UTR CG3280 + chr3L 9613946 intergenic CG3280 + chr3L 9613999 intergenic CG3280 + chr3L_4_9610001 chr3L_9610001 RAL-237 418 chr3L 9629745 9629768 chr3L 9629821 9629844 4 76 0.0 1.0 0.5 2.7 99 chr3L 9629745 intron CG8336 + chr3L 9629794 intron CG8336 + chr3L 9629844 intron CG8336 + chr3L_4_9625001 chr3L_9625001 RAL-237 419 chr3L 9689515 9689542 chr3L 9689595 9689622 5 80 3.0 1.5 2.2 1.6 107 chr3L 9689515 intron CG6767 - chr3L 9689568 intron CG6767 - chr3L 9689622 intron CG6767 - chr3L_5_9685001 chr3L_9685001 RAL-237 420 chr3L 9697782 9697802 chr3L 9697874 9697894 7 92 2.0 2.0 2.0 2.3 112 chr3L 9697782 intergenic not near genes chr3L 9697838 intergenic UbcD4 + chr3L 9697894 intergenic UbcD4 + chr3L_7_9695001 chr3L_9695001 RAL-237 421 chr3L 9715596 9715625 chr3L 9715672 9715702 7 76 1.5 5.5 3.5 1.6 106 chr3L 9715596 intron vsg + chr3L 9715649 intron vsg + chr3L 9715702 intron vsg + chr3L_7_9715001 chr3L_9715001 RAL-237 422 chr3L 9918886 9918905 chr3L 9918980 9919000 7 95 1.5 1.5 1.5 2.8 114 chr3L 9918886 intron CG34356 + chr3L 9918943 intron CG34356 + chr3L 9919000 intron CG34356 + chr3L_7_9915001 chr3L_9915001 RAL-237 423 chr3L 10003156 10003179 chr3L 10003251 10003276 5 96 0.5 2.0 1.2 2.3 120 chr3L 10003156 intron dpr6 + chr3L 10003216 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-237 424 chr3L 10019635 10019668 chr3L 10019894 10019926 5 257 0.0 0.0 0.0 5.0 291 chr3L 10019635 intron dpr6 + chr3L 10019780 intron dpr6 + chr3L 10019926 intron dpr6 + chr3L_5_10015001 chr3L_10015001 RAL-237 425 chr3L 10417577 10417603 chr3L 10417654 10417664 6 72 0.5 0.0 0.2 5.0 87 chr3L 10417577 intergenic not near genes chr3L 10417620 intergenic not near genes chr3L 10417664 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-237 426 chr3L 10584284 10584295 chr3L 10584370 10584382 4 87 1.5 2.5 2.0 1.3 98 chr3L 10584284 intron A2bp1 + chr3L 10584333 intron A2bp1 + chr3L 10584382 intron A2bp1 + chr3L_4_10580001 chr3L_10580001 RAL-237 427 chr3L 11087062 11087087 chr3L 11088850 11088876 S-element 7 1789 2.0 2.5 2.2 2.2 1814 chr3L 11087062 intron JIL-1 - chr3L 11087969 intron JIL-1 - chr3L 11088876 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-237 428 chr3L 11105295 11105329 chr3L 11107006 11107036 X-element 12 1708 1.5 3.5 2.5 3.4 1741 chr3L 11105295 intergenic not near genes chr3L 11106166 intergenic not near genes chr3L 11107036 exon CG32073 - chr3L_12_11105001 chr3L_11105001 RAL-237 429 chr3L 11218493 11218524 chr3L 11218651 11218682 5 158 2.0 1.0 1.5 2.0 189 chr3L 11218493 intron CG42671 + chr3L 11218588 intron CG42671 + chr3L 11218682 intron CG42671 + chr3L_5_11215001 chr3L_11215001 RAL-237 430 chr3L 11329712 11329726 chr3L 11332917 11332929 jockey 4 3204 0.5 1.0 0.8 2.2 3217 chr3L 11329712 intergenic not near genes chr3L 11331320 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-237 431 chr3L 11465788 11465798 chr3L 11465868 11465879 4 80 1.0 4.0 2.5 1.1 91 chr3L 11465788 5` UTR CG6140 - chr3L 11465834 5` UTR CG6140 - chr3L 11465879 intergenic CG6140 - chr3L_4_11465001 chr3L_11465001 RAL-237 432 chr3L 11723082 11723115 chr3L 11727877 11727909 Doc 10 4792 1.5 1.5 1.5 4.0 4827 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_10_11725001 chr3L_11725001 RAL-237 433 chr3L 11744013 11744038 chr3L 11744120 11744146 6 108 2.0 0.0 1.0 3.0 133 chr3L 11744013 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-237 434 chr3L 802565 802566 chr3L 11777678 11777678 9 10975112 12.0 23.0 17.5 0.5 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_6290001 chr3L_6290001 RAL-237 435 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028208 6.0 23.0 14.5 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-237 436 chr3L 11777678 11777678 chr3L 12163304 12163305 6 385627 22.5 5.5 14.0 0.4 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_6_11970001 chr3L_11970001 RAL-237 437 chr3L 11849338 11849354 chr3L 11849436 11849453 5 99 2.0 1.0 1.5 2.0 115 chr3L 11849338 intergenic not near genes chr3L 11849396 intergenic not near genes chr3L 11849453 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-237 438 chr3L 11864553 11864582 chr3L 11865848 11865877 pogo 8 1295 3.5 2.0 2.8 2.1 1324 chr3L 11864553 intron CG44837 - chr3L 11865215 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-237 439 chr3L 12013915 12013938 chr3L 12014006 12014029 13 91 4.5 2.5 3.5 2.9 114 chr3L 12013915 intron rols - chr3L 12013972 intron rols - chr3L 12014029 intron rols - chr3L_13_12010001 chr3L_12010001 RAL-237 440 chr3L 12075428 12075438 chr3L 12075517 12075527 6 89 3.5 0.0 1.8 2.1 99 chr3L 12075428 intron Sema-5c - chr3L 12075478 intron Sema-5c - chr3L 12075527 intron Sema-5c - chr3L_6_12075001 chr3L_12075001 RAL-237 441 chr3L 12312495 12312511 chr3L 12312568 12312589 5 76 2.0 3.0 2.5 1.4 94 chr3L 12312495 intergenic not near genes chr3L 12312542 intergenic not near genes chr3L 12312589 intergenic not near genes chr3L_5_12310001 chr3L_12310001 RAL-237 442 chr3L 12476308 12476321 chr3L 12476383 12476397 6 76 2.0 4.0 3.0 1.5 89 chr3L 12476308 intron CG10663 - chr3L 12476352 intron CG10663 - chr3L 12476397 intron CG10663 - chr3L_6_12475001 chr3L_12475001 RAL-237 443 chr3L 12894804 12894820 chr3L 12894882 12894898 7 78 3.5 1.5 2.5 2.0 94 chr3L 12894804 intergenic CG14118 + chr3L 12894851 intergenic CG14118 + chr3L 12894898 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-237 444 chr3L 12957795 12957820 chr3L 12962277 12962302 copia 4 4482 1.0 0.5 0.8 2.2 4507 chr3L 12957795 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-237 445 chr3L 13194068 13194098 chr3L 13194147 13194177 4 78 1.0 0.0 0.5 2.7 109 chr3L 13194068 intergenic not near genes chr3L 13194122 intergenic not near genes chr3L 13194177 intergenic not near genes chr3L_4_13190001 chr3L_13190001 RAL-237 446 chr3L 13400537 13400546 chr3L 13400613 13400622 5 76 3.5 2.5 3.0 1.2 85 chr3L 13400537 intron sens - chr3L 13400580 intron sens - chr3L 13400622 intron sens - chr3L_5_13400001 chr3L_13400001 RAL-237 447 chr3L 13525157 13525190 chr3L 13532953 13532985 roo 22 7795 1.0 2.0 1.5 8.8 7828 chr3L 13525157 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_22_13525001 chr3L_13525001 RAL-237 448 chr3L 13629530 13629546 chr3L 13629640 13629657 4 110 1.0 3.5 2.2 1.2 127 chr3L 13629530 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629657 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-237 449 chr3L 13862412 13862442 chr3L 13862775 13862806 8 363 3.0 3.0 3.0 2.0 394 chr3L 13862412 intron CG8745 - chr3L 13862609 intron CG8745 - chr3L 13862806 intron CG8745 - chr3L_8_13860001 chr3L_13860001 RAL-237 450 chr3L 13884379 13884384 chr3L 13884470 13884474 4 90 5.0 3.0 4.0 0.8 95 chr3L 13884379 intron dysc - chr3L 13884426 intron dysc - chr3L 13884474 intron dysc - chr3L_4_13880001 chr3L_13880001 RAL-237 451 chr3L 14295986 14296009 chr3L 14296469 14296472 roo 4 478 1.0 1.5 1.2 1.8 486 chr3L 14295986 intron fz + chr3L 14296229 intron fz + chr3L 14296472 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-237 452 chr3L 14312030 14312060 chr3L 14316840 14316840 X-element 7 4807 4.5 4.5 4.5 1.3 4810 chr3L 14312030 exon fz + chr3L 14314435 intron fz + chr3L 14316840 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-237 453 chr3L 14356520 14356547 chr3L 14356599 14356623 4 79 2.5 3.5 3.0 1.0 103 chr3L 14356520 intron fz + chr3L 14356572 intron fz + chr3L 14356623 intron fz + chr3L_4_14355001 chr3L_14355001 RAL-237 454 chr3L 14399176 14399191 chr3L 14399265 14399280 5 89 2.5 0.0 1.2 2.3 104 chr3L 14399176 intergenic not near genes chr3L 14399228 intergenic not near genes chr3L 14399280 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-237 455 chr3L 14411877 14411894 chr3L 14411956 14411972 5 78 2.0 0.5 1.2 2.3 95 chr3L 14411877 intron CG3919 + chr3L 14411924 intron CG3919 + chr3L 14411972 intron CG3919 + chr3L_5_14410001 chr3L_14410001 RAL-237 456 chr3L 14740893 14740918 chr3L 14740982 14741007 4 89 2.0 3.0 2.5 1.1 114 chr3L 14740893 intron ome + chr3L 14740950 intron ome + chr3L 14741007 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-237 457 chr3L 14762468 14762497 chr3L 14762712 14762738 5 243 0.5 0.5 0.5 3.3 270 chr3L 14762468 intron CG9384 + chr3L 14762603 intron CG9384 + chr3L 14762738 intron CG9384 + chr3L_5_14760001 chr3L_14760001 RAL-237 458 chr3L 15101320 15101343 chr3L 15101410 15101433 4 90 10.5 4.0 7.2 0.5 113 chr3L 15101320 intron,3` UTR CTPsyn +,CR43972 - chr3L 15101376 intron,3` UTR CTPsyn +,CR43972 - chr3L 15101433 intron,3` UTR CTPsyn +,CR43972 - chr3L_4_15100001 chr3L_15100001 RAL-237 459 chr3L 15340604 15340608 chr3L 15346527 15346562 5 5933 16.5 20.5 18.5 0.3 5958 chr3L 15340604 exon Toll-6 + chr3L 15343583 3` UTR Toll-6 + chr3L 15346562 intergenic not near genes chr3L_5_15340001 chr3L_15340001 RAL-237 460 chr3L 15899238 15899258 chr3L 15899805 15899822 jockey 4 565 1.0 4.5 2.8 1.1 584 chr3L 15899238 intergenic pHCl - chr3L 15899530 intergenic not near genes chr3L 15899822 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-237 461 chr3L 16070742 16070762 chr3L 16070819 16070838 5 77 1.0 0.5 0.8 2.8 96 chr3L 16070742 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070838 exon Mbs + chr3L_5_16070001 chr3L_16070001 RAL-237 462 chr3L 16212810 16212841 chr3L 16212901 16212930 8 91 1.5 0.5 1.0 4.0 120 chr3L 16212810 intergenic CG13073 - chr3L 16212870 intergenic CG13073 - chr3L 16212930 intergenic CG13073 - chr3L_8_16210001 chr3L_16210001 RAL-237 463 chr3L 16252078 16252084 chr3L 16252202 16252208 5 123 15.0 3.0 9.0 0.5 130 chr3L 16252078 5` UTR CG13055 - chr3L 16252143 5` UTR CG13055 - chr3L 16252208 5` UTR CG13055 - chr3L_5_16250001 chr3L_16250001 RAL-237 464 chr3L 16252085 16252106 chr3L 16252199 16252231 4 115 6.0 3.0 4.5 0.7 146 chr3L 16252085 5` UTR CG13055 - chr3L 16252158 5` UTR CG13055 - chr3L 16252231 5` UTR CG13055 - chr3L_4_16250001 chr3L_16250001 RAL-237 465 chr3L 16279086 16279103 chr3L 16279167 16279184 4 81 1.5 0.5 1.0 2.0 98 chr3L 16279086 intron CG13050 - chr3L 16279135 intron CG13050 - chr3L 16279184 intron CG13050 - chr3L_4_16275001 chr3L_16275001 RAL-237 466 chr3L 16493974 16493995 chr3L 16494491 16494512 jockey 6 516 2.5 1.0 1.8 2.1 538 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494243 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494512 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-237 467 chr3L 16503638 16503655 chr3L 16503723 16503740 5 85 1.0 1.0 1.0 2.5 102 chr3L 16503638 intron CG43373 - chr3L 16503689 intron CG43373 - chr3L 16503740 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-237 468 chr3L 16560313 16560325 chr3L 16560397 16560410 7 84 3.5 3.0 3.2 1.7 97 chr3L 16560313 intergenic not near genes chr3L 16560362 intergenic not near genes chr3L 16560410 intergenic not near genes chr3L_7_16560001 chr3L_16560001 RAL-237 469 chr3L 16561108 16561135 chr3L 16561185 16561213 9 78 4.0 1.0 2.5 2.6 105 chr3L 16561108 intergenic not near genes chr3L 16561160 intergenic not near genes chr3L 16561213 intergenic not near genes chr3L_9_16560001 chr3L_16560001 RAL-237 470 chr3L 16616518 16616540 chr3L 16621845 16621868 297 4 5328 1.0 3.5 2.2 1.2 5350 chr3L 16616518 3` UTR Abl - chr3L 16619193 3` UTR Abl - chr3L 16621868 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-237 471 chr3L 16643654 16643677 chr3L 16643736 16643759 7 82 2.5 1.5 2.0 2.3 105 chr3L 16643654 intron Abl - chr3L 16643706 intron Abl - chr3L 16643759 intron Abl - chr3L_7_16640001 chr3L_16640001 RAL-237 472 chr3L 16652688 16652716 chr3L 16652765 16652795 6 76 0.0 1.0 0.5 4.0 107 chr3L 16652688 intron Baldspot - chr3L 16652742 intron Baldspot - chr3L 16652795 intron Baldspot - chr3L_6_16650001 chr3L_16650001 RAL-237 473 chr3L 16760850 16760880 chr3L 16760988 16761016 4 138 0.0 1.0 0.5 2.7 166 chr3L 16760850 intergenic not near genes chr3L 16760933 intergenic not near genes chr3L 16761016 intergenic not near genes chr3L_4_16760001 chr3L_16760001 RAL-237 474 chr3L 16818770 16818776 chr3L 16818845 16818852 4 76 1.0 3.0 2.0 1.3 82 chr3L 16818770 intron,intron nudC +,CG13024 - chr3L 16818811 intron,intron nudC +,CG13024 - chr3L 16818852 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-237 475 chr3L 16941400 16941432 chr3L 16941501 16941531 4 99 1.0 0.0 0.5 2.7 131 chr3L 16941400 intron Cpr73D - chr3L 16941466 intron Cpr73D - chr3L 16941531 intron Cpr73D - chr3L_4_16940001 chr3L_16940001 RAL-237 476 chr3L 16945729 16945758 chr3L 16954882 16954910 roo 10 9146 2.0 0.0 1.0 5.0 9181 chr3L 16945729 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954910 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-237 477 chr3L 17026791 17026817 chr3L 17026872 17026897 4 80 3.0 2.5 2.8 1.1 106 chr3L 17026791 exon Fit2 + chr3L 17026844 3` UTR Fit2 + chr3L 17026897 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-237 478 chr3L 17034266 17034301 chr3L 17034409 17034440 10 142 4.5 4.5 4.5 1.8 174 chr3L 17034266 intergenic not near genes chr3L 17034353 intergenic not near genes chr3L 17034440 intergenic not near genes chr3L_10_17030001 chr3L_17030001 RAL-237 479 chr3L 17034943 17034961 chr3L 17035131 17035148 G2 4 188 0.5 1.0 0.8 2.2 205 chr3L 17034943 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035148 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-237 480 chr3L 17142734 17142760 chr3L 17142962 17142987 7 227 3.0 1.5 2.2 2.2 253 chr3L 17142734 intron Rbp6 - chr3L 17142860 intron Rbp6 - chr3L 17142987 intron Rbp6 - chr3L_7_17140001 chr3L_17140001 RAL-237 481 chr3L 17146951 17146989 chr3L 17147033 17147071 14 80 4.0 3.0 3.5 3.1 120 chr3L 17146951 intron Rbp6 - chr3L 17147011 intron Rbp6 - chr3L 17147071 intron Rbp6 - chr3L_14_17145001 chr3L_17145001 RAL-237 482 chr3L 17149163 17149186 chr3L 17149244 17149250 7 78 5.5 0.0 2.8 1.8 87 chr3L 17149163 intron Rbp6 - chr3L 17149206 intron Rbp6 - chr3L 17149250 intron Rbp6 - chr3L_7_17145001 chr3L_17145001 RAL-237 483 chr3L 17400155 17400171 chr3L 17400237 17400252 4 81 2.5 3.0 2.8 1.1 97 chr3L 17400155 intron blot - chr3L 17400204 intron blot - chr3L 17400252 intron blot - chr3L_4_17400001 chr3L_17400001 RAL-237 484 chr3L 17414572 17414600 chr3L 17414664 17414675 9 89 2.5 1.0 1.8 3.2 103 chr3L 17414572 intron blot - chr3L 17414624 intron blot - chr3L 17414675 intron blot - chr3L_9_17410001 chr3L_17410001 RAL-237 485 chr3L 17421611 17421630 chr3L 17421721 17421744 4 113 1.0 0.5 0.8 2.2 133 chr3L 17421611 intergenic blot -,Sec3 - chr3L 17421678 intergenic Sec3 -,blot - chr3L 17421744 intergenic Sec3 -,blot - chr3L_4_17420001 chr3L_17420001 RAL-237 486 chr3L 17516984 17517004 chr3L 17524542 17524562 412 7 7557 0.5 5.0 2.8 1.8 7578 chr3L 17516984 intron CG7564 + chr3L 17520773 intron CG7564 + chr3L 17524562 3` UTR CG7564 + chr3L_7_17520001 chr3L_17520001 RAL-237 487 chr3L 17789851 17789877 chr3L 17789927 17789953 4 76 0.0 1.0 0.5 2.7 102 chr3L 17789851 intergenic not near genes chr3L 17789902 intergenic not near genes chr3L 17789953 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-237 488 chr3L 17790459 17790603 chr3L 17790600 17790868 8 156 1.0 1.0 1.0 4.0 409 chr3L 17790459 intergenic not near genes chr3L 17790664 intergenic CG42815 - chr3L 17790868 intergenic CG42815 - chr3L_8_17790001 chr3L_17790001 RAL-237 489 chr3L 17836215 17836237 chr3L 17836292 17836314 5 76 1.5 2.0 1.8 1.8 99 chr3L 17836215 intron Grd + chr3L 17836264 intron Grd + chr3L 17836314 intron Grd + chr3L_5_17835001 chr3L_17835001 RAL-237 490 chr3L 18047707 18047740 chr3L 18056764 18056797 roo 4 9057 1.0 1.5 1.2 1.8 9090 chr3L 18047707 intron Eip75B - chr3L 18052252 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-237 491 chr3L 18057976 18058012 chr3L 18058077 18058113 8 101 2.0 2.0 2.0 2.7 137 chr3L 18057976 intron Eip75B - chr3L 18058044 intron Eip75B - chr3L 18058113 intron Eip75B - chr3L_8_18055001 chr3L_18055001 RAL-237 492 chr3L 18106251 18106276 chr3L 18106370 18106393 5 119 2.5 0.5 1.5 2.0 142 chr3L 18106251 intergenic CG13698 -,mRpS26 + chr3L 18106322 intergenic CG13698 -,mRpS26 + chr3L 18106393 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-237 493 chr3L 18122637 18122654 chr3L 18122713 18122731 4 76 0.0 1.5 0.8 2.2 94 chr3L 18122637 intergenic not near genes chr3L 18122684 intergenic not near genes chr3L 18122731 intergenic not near genes chr3L_4_18120001 chr3L_18120001 RAL-237 494 chr3L 18198929 18198930 chr3L 24821492 24821493 4 6622563 2.0 13.0 7.5 0.5 6622564 chr3L 18198929 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821493 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-237 495 chr3L 18221100 18221114 chr3L 18221181 18221195 5 80 0.0 0.0 0.0 5.0 95 chr3L 18221100 intergenic not near genes chr3L 18221148 intergenic not near genes chr3L 18221195 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-237 496 chr3L 18772410 18772437 chr3L 18781091 18781118 roo 11 8681 4.0 1.0 2.5 3.1 8708 chr3L 18772410 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_11_18775001 chr3L_18775001 RAL-237 497 chr3L 18784393 18784406 chr3L 18784482 18784495 4 89 1.0 2.0 1.5 1.6 102 chr3L 18784393 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784495 intron ftz-f1 - chr3L_4_18780001 chr3L_18780001 RAL-237 498 chr3L 18810146 18810178 chr3L 18810223 18810258 7 80 1.5 0.0 0.8 3.9 112 chr3L 18810146 intron CG14073 - chr3L 18810202 intron CG14073 - chr3L 18810258 intron CG14073 - chr3L_7_18810001 chr3L_18810001 RAL-237 499 chr3L 18888269 18888288 chr3L 18888354 18888372 4 85 0.0 0.5 0.2 3.3 103 chr3L 18888269 intron CG3961 - chr3L 18888320 intron CG3961 - chr3L 18888372 intron CG3961 - chr3L_4_18885001 chr3L_18885001 RAL-237 500 chr3L 19008843 19008872 chr3L 19009178 19009209 jockey 5 337 1.5 4.5 3.0 1.2 366 chr3L 19008843 intron nkd - chr3L 19009026 intron nkd - chr3L 19009209 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-237 501 chr3L 19063504 19063515 chr3L 19063639 19063651 6 136 1.5 2.5 2.0 2.0 147 chr3L 19063504 5` UTR CG6812 + chr3L 19063578 5` UTR CG6812 + chr3L 19063651 5` UTR CG6812 + chr3L_6_19060001 chr3L_19060001 RAL-237 502 chr3L 19101720 19101740 chr3L 19102092 19102112 4 372 1.0 0.0 0.5 2.7 392 chr3L 19101720 intergenic not near genes chr3L 19101916 intergenic not near genes chr3L 19102112 intergenic not near genes chr3L_4_19100001 chr3L_19100001 RAL-237 503 chr3L 19115643 19115665 chr3L 19115819 19115840 BS 5 172 4.5 1.5 3.0 1.2 197 chr3L 19115643 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115840 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-237 504 chr3L 9307795 9307796 chr3L 19220637 19220637 6 9912841 1.5 7.5 4.5 1.1 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_6_14260001 chr3L_14260001 RAL-237 505 chr3L 18417066 18417066 chr3L 19220637 19220637 4 803571 4.5 7.5 6.0 0.6 803571 chr3L 18417066 intergenic not near genes chr3L 18818852 intron CG14073 - chr3L 19220637 intron fz2 - chr3L_4_18815001 chr3L_18815001 RAL-237 506 chr3L 19244121 19244134 chr3L 19244199 19244212 5 78 2.0 2.0 2.0 1.7 91 chr3L 19244121 intergenic not near genes chr3L 19244166 intergenic not near genes chr3L 19244212 intergenic not near genes chr3L_5_19240001 chr3L_19240001 RAL-237 507 chr3L 19262212 19262244 chr3L 19262294 19262326 6 82 0.0 2.5 1.2 2.7 114 chr3L 19262212 3` UTR Bet1 + chr3L 19262269 3` UTR,3` UTR Bet1 +,Max - chr3L 19262326 3` UTR,3` UTR Bet1 +,Max - chr3L_6_19260001 chr3L_19260001 RAL-237 508 chr3L 19279674 19279687 chr3L 19279766 19279779 4 92 11.5 1.5 6.5 0.5 105 chr3L 19279674 intron CG14086 + chr3L 19279726 exon CG14086 + chr3L 19279779 exon CG14086 + chr3L_4_19275001 chr3L_19275001 RAL-237 509 chr3L 19342761 19342777 chr3L 19342852 19342867 4 91 1.5 1.0 1.2 1.8 106 chr3L 19342761 3` UTR CG32206 - chr3L 19342814 3` UTR CG32206 - chr3L 19342867 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-237 510 chr3L 19387610 19387634 chr3L 19387952 19387977 6 342 1.5 1.0 1.2 2.7 367 chr3L 19387610 intron,exon CG32206 -,ms(3)76Ba + chr3L 19387794 intron,intron CG32206 -,ms(3)76Ba + chr3L 19387977 intron,exon CG32206 -,ms(3)76Ba + chr3L_6_19385001 chr3L_19385001 RAL-237 511 chr3L 19426758 19426783 chr3L 19426836 19426861 5 77 3.0 5.5 4.2 1.0 103 chr3L 19426758 intergenic not near genes chr3L 19426810 intergenic not near genes chr3L 19426861 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-237 512 chr3L 19820314 19820318 chr3L 19827849 19827867 412 4 7546 0.5 2.0 1.2 1.8 7553 chr3L 19820314 intron Deaf1 + chr3L 19824090 intron Deaf1 + chr3L 19827867 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 RAL-237 513 chr3L 19845735 19845763 chr3L 19845819 19845850 12 85 2.5 3.0 2.8 3.2 115 chr3L 19845735 intron Papss + chr3L 19845792 intron Papss + chr3L 19845850 intron Papss + chr3L_12_19845001 chr3L_19845001 RAL-237 514 chr3L 19848506 19848532 chr3L 19857694 19857713 roo 5 9188 2.5 3.0 2.8 1.3 9207 chr3L 19848506 intron Papss + chr3L 19853110 intron Papss + chr3L 19857713 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-237 515 chr3L 19981203 19981220 chr3L 19981283 19981300 5 80 1.5 0.5 1.0 2.5 97 chr3L 19981203 intergenic CG17732 + chr3L 19981252 intergenic CG17732 + chr3L 19981300 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-237 516 chr3L 20076839 20076867 chr3L 20076976 20077002 6 136 1.0 3.5 2.2 1.9 163 chr3L 20076839 intron sNPF-R - chr3L 20076920 intron sNPF-R - chr3L 20077002 intron sNPF-R - chr3L_6_20075001 chr3L_20075001 RAL-237 517 chr3L 20113657 20113683 chr3L 20122914 20122940 roo 4 9256 2.5 3.0 2.8 1.1 9283 chr3L 20113657 intergenic not near genes chr3L 20118298 intergenic not near genes chr3L 20122940 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-237 518 chr3L 20127904 20127917 chr3L 20127977 20127993 7 74 6.5 4.5 5.5 1.1 89 chr3L 20127904 intergenic not near genes chr3L 20127948 intergenic not near genes chr3L 20127993 intergenic not near genes chr3L_7_20125001 chr3L_20125001 RAL-237 519 chr3L 20257337 20257349 chr3L 20258457 20258469 pogo 4 1120 2.0 2.5 2.2 1.2 1132 chr3L 20257337 intron rdgC + chr3L 20257903 intron rdgC + chr3L 20258469 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-237 520 chr3L 20283695 20283706 chr3L 20283777 20283790 4 83 2.5 0.0 1.2 1.8 95 chr3L 20283695 intron gogo - chr3L 20283742 intron gogo - chr3L 20283790 intron gogo - chr3L_4_20280001 chr3L_20280001 RAL-237 521 chr3L 20476758 20476775 chr3L 20484357 20484374 springer 4 7599 0.5 1.0 0.8 2.2 7616 chr3L 20476758 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484374 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-237 522 chr3L 20570023 20570050 chr3L 20570138 20570163 4 114 2.0 2.5 2.2 1.2 140 chr3L 20570023 intergenic not near genes chr3L 20570093 intergenic not near genes chr3L 20570163 intergenic not near genes chr3L_4_20570001 chr3L_20570001 RAL-237 523 chr3L 20733806 20733840 chr3L 20733892 20733926 4 86 0.5 0.5 0.5 2.7 120 chr3L 20733806 intron CG13252 + chr3L 20733866 intron CG13252 + chr3L 20733926 intron CG13252 + chr3L_4_20730001 chr3L_20730001 RAL-237 524 chr3L 20821294 20821308 chr3L 20824904 20824918 NOF 6 3610 2.0 2.5 2.2 1.9 3624 chr3L 20821294 intron Pka-R1 + chr3L 20823106 intron Pka-R1 + chr3L 20824918 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-237 525 chr3L 20849279 20849302 chr3L 20849357 20849381 8 79 2.5 5.5 4.0 1.6 102 chr3L 20849279 intron CG32432 - chr3L 20849330 intron CG32432 - chr3L 20849381 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-237 526 chr3L 21014917 21014948 chr3L 21023396 21023424 Tirant 4 8479 2.5 4.0 3.2 1.0 8507 chr3L 21014917 intron skd - chr3L 21019170 intron skd - chr3L 21023424 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-237 527 chr3L 21125845 21125854 chr3L 21125928 21125934 4 82 1.5 1.0 1.2 1.8 89 chr3L 21125845 intron ko - chr3L 21125890 intron ko - chr3L 21125934 intron ko - chr3L_4_21125001 chr3L_21125001 RAL-237 528 chr3L 21236634 21236656 chr3L 21236720 21236742 5 86 2.5 0.0 1.2 2.3 108 chr3L 21236634 intron Eip78C + chr3L 21236688 intron Eip78C + chr3L 21236742 intron Eip78C + chr3L_5_21235001 chr3L_21235001 RAL-237 529 chr3L 21395151 21395178 chr3L 21395234 21395265 7 86 2.0 5.0 3.5 1.6 114 chr3L 21395151 intron rgn + chr3L 21395208 intron rgn + chr3L 21395265 intron rgn + chr3L_7_21395001 chr3L_21395001 RAL-237 530 chr3L 21498839 21498869 chr3L 21500475 21500505 1360 5 1636 1.0 1.5 1.2 2.3 1666 chr3L 21498839 intron Glg1 - chr3L 21499672 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-237 531 chr3L 21530413 21530434 chr3L 21530498 21530519 5 85 1.5 1.0 1.2 2.3 106 chr3L 21530413 3` UTR Mkrn1 - chr3L 21530466 3` UTR Mkrn1 - chr3L 21530519 3` UTR Mkrn1 - chr3L_5_21530001 chr3L_21530001 RAL-237 532 chr3L 21656995 21657028 chr3L 21657088 21657121 14 92 3.0 1.5 2.2 4.4 126 chr3L 21656995 intron CG43980 + chr3L 21657058 intron CG43980 + chr3L 21657121 intron CG43980 + chr3L_14_21655001 chr3L_21655001 RAL-237 533 chr3L 21689446 21689460 chr3L 21689527 21689541 4 80 6.0 7.0 6.5 0.5 95 chr3L 21689446 intergenic not near genes chr3L 21689494 intergenic not near genes chr3L 21689541 intergenic not near genes chr3L_4_21685001 chr3L_21685001 RAL-237 534 chr3L 21742517 21742532 chr3L 21742621 21742636 7 103 4.5 5.5 5.0 1.2 119 chr3L 21742517 intergenic CG14572 + chr3L 21742576 intergenic CG14572 + chr3L 21742636 intergenic CG14572 + chr3L_7_21740001 chr3L_21740001 RAL-237 535 chr3L 22099676 22099705 chr3L 22105860 22105891 3S18 6 6185 6.0 1.5 3.8 1.2 6215 chr3L 22099676 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105891 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-237 536 chr3L 22130508 22130521 chr3L 22130654 22130667 9 145 2.0 5.0 3.5 2.0 159 chr3L 22130508 intergenic not near genes chr3L 22130588 intergenic not near genes chr3L 22130667 intergenic not near genes chr3L_9_22130001 chr3L_22130001 RAL-237 537 chr3L 22179098 22179111 chr3L 22179179 22179197 6 83 3.0 1.5 2.2 1.9 99 chr3L 22179098 intron olf413 + chr3L 22179148 intron olf413 + chr3L 22179197 intron olf413 + chr3L_6_22175001 chr3L_22175001 RAL-237 538 chr3L 22207358 22207381 chr3L 22207447 22207471 4 90 1.0 0.5 0.8 2.2 113 chr3L 22207358 intron olf413 + chr3L 22207414 intron olf413 + chr3L 22207471 intron olf413 + chr3L_4_22205001 chr3L_22205001 RAL-237 539 chr3L 22251282 22251301 chr3L 22251413 22251435 7 131 2.5 2.5 2.5 2.0 153 chr3L 22251282 intergenic not near genes chr3L 22251358 intergenic not near genes chr3L 22251435 intergenic not near genes chr3L_7_22250001 chr3L_22250001 RAL-237 540 chr3L 22411380 22411397 chr3L 22411446 22411450 4 62 1.5 2.0 1.8 1.4 70 chr3L 22411380 intergenic not near genes chr3L 22411415 intergenic not near genes chr3L 22411450 intergenic not near genes chr3L_4_22410001 chr3L_22410001 RAL-237 541 chr3L 22447195 22447233 chr3L 22447286 22447324 9 91 2.0 4.0 3.0 2.2 129 chr3L 22447195 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447324 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-237 542 chr3L 22522699 22522723 chr3L 22522776 22522800 6 77 1.5 3.5 2.5 1.7 101 chr3L 22522699 intergenic not near genes chr3L 22522750 intergenic not near genes chr3L 22522800 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-237 543 chr3L 22577624 22577648 chr3L 22582405 22582436 Doc 7 4786 4.5 5.5 5.0 1.2 4812 chr3L 22577624 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-237 544 chr3L 22732477 22732494 chr3L 22732558 22732574 5 81 1.0 5.5 3.2 1.2 97 chr3L 22732477 intron CG11367 + chr3L 22732526 intron CG11367 + chr3L 22732574 intron CG11367 + chr3L_5_22730001 chr3L_22730001 RAL-237 545 chr3L 22853462 22853699 chr3L 22853549 22853785 17 86 4.0 4.0 4.0 3.4 323 chr3L 22853462 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853624 5` UTR CR43426 + chr3L 22853785 5` UTR CR43426 + chr3L_17_22850001 chr3L_22850001 RAL-237 546 chr3L 9307795 9307796 chr3L 22908066 22908066 9 13600270 1.5 9.5 5.5 1.4 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_9_16105001 chr3L_16105001 RAL-237 547 chr3L 18417066 18417066 chr3L 22908066 22908066 6 4491000 4.5 9.5 7.0 0.8 4491000 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_6_20660001 chr3L_20660001 RAL-237 548 chr3L 19220633 19220637 chr3L 22908066 22908066 24 3687432 7.5 9.5 8.5 2.5 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_24_21060001 chr3L_21060001 RAL-237 549 chr3L 18417066 18417066 chr3L 22908067 22908067 5 4491001 4.5 9.5 7.0 0.6 4491001 chr3L 18417066 intergenic not near genes chr3L 20662566 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_5_20660001 chr3L_20660001 RAL-237 550 chr3L 19220633 19220637 chr3L 22908067 22908067 20 3687432 7.5 9.5 8.5 2.1 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_20_21060001 chr3L_21060001 RAL-237 551 chr3R 2534135 2534150 chr3R 2541703 2541719 5 7569 11.0 5.0 8.0 0.6 7584 chr3R 2534135 intergenic not near genes chr3R 2537927 intergenic not near genes chr3R 2541719 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-237 552 chr3R 4063809 4063832 chr3R 4069089 4069105 4 5278 3.0 5.0 4.0 0.8 5296 chr3R 4063809 intergenic not near genes chr3R 4066457 intergenic not near genes chr3R 4069105 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-237 553 chr3R 4206071 4206102 chr3R 4211646 4211676 mdg3 5 5574 1.0 1.0 1.0 2.5 5605 chr3R 4206071 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211676 intron CG14636 - chr3R_5_4205001 chr3R_4205001 RAL-237 554 chr3R 4408411 4408437 chr3R 4412715 4412741 Juan 5 4304 1.5 3.5 2.5 1.4 4330 chr3R 4408411 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412741 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-237 555 chr3R 4722344 4722362 chr3R 4722481 4722498 5 137 2.0 2.0 2.0 1.7 154 chr3R 4722344 intron Nep2 - chr3R 4722421 intron Nep2 - chr3R 4722498 intron Nep2 - chr3R_5_4720001 chr3R_4720001 RAL-237 556 chr3R 4896298 4896307 chr3R 4896391 4896400 4 93 1.0 1.0 1.0 2.0 102 chr3R 4896298 intergenic CR45580 + chr3R 4896349 intergenic CR45580 + chr3R 4896400 intergenic CR45580 + chr3R_4_4895001 chr3R_4895001 RAL-237 557 chr3R 5142296 5142320 chr3R 5142379 5142403 7 83 1.0 3.5 2.2 2.2 107 chr3R 5142296 intergenic not near genes chr3R 5142350 intergenic not near genes chr3R 5142403 intergenic not near genes chr3R_7_5140001 chr3R_5140001 RAL-237 558 chr3R 5278087 5278122 chr3R 5278168 5278192 11 80 1.0 1.5 1.2 5.0 105 chr3R 5278087 intron mtd - chr3R 5278140 intron mtd - chr3R 5278192 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-237 559 chr3R 5385979 5386005 chr3R 5386150 5386169 8 170 4.5 6.0 5.2 1.3 190 chr3R 5385979 intron kkv - chr3R 5386074 intron kkv - chr3R 5386169 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-237 560 chr3R 5746015 5746042 chr3R 5746256 5746283 pogo 6 241 1.0 4.5 2.8 1.6 268 chr3R 5746015 3` UTR Madm + chr3R 5746149 3` UTR Madm + chr3R 5746283 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-237 561 chr3R 5772377 5772409 chr3R 5772535 5772567 8 158 0.5 3.5 2.0 2.7 190 chr3R 5772377 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_8_5770001 chr3R_5770001 RAL-237 562 chr3R 5809112 5809143 chr3R 5809353 5809384 pogo 9 241 4.5 1.5 3.0 2.2 272 chr3R 5809112 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809384 3` UTR CG11000 + chr3R_9_5805001 chr3R_5805001 RAL-237 563 chr3R 5822381 5822388 chr3R 5823548 5823555 1360 4 1167 4.0 4.5 4.2 0.8 1174 chr3R 5822381 3` UTR CG2023 - chr3R 5822968 3` UTR CG2023 - chr3R 5823555 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-237 564 chr3R 5927562 5927589 chr3R 5927801 5927828 pogo 11 240 2.0 1.0 1.5 4.4 266 chr3R 5927562 intron CG34113 - chr3R 5927695 intron CG34113 - chr3R 5927828 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-237 565 chr3R 6000472 6000492 chr3R 6000581 6000601 5 108 1.5 2.5 2.0 1.7 129 chr3R 6000472 3` UTR Rm62 - chr3R 6000536 3` UTR Rm62 - chr3R 6000601 3` UTR Rm62 - chr3R_5_6000001 chr3R_6000001 RAL-237 566 chr3R 6015967 6015992 chr3R 6024448 6024449 Tirant 7 8477 2.0 2.0 2.0 2.3 8482 chr3R 6015967 intergenic not near genes chr3R 6020208 intergenic not near genes chr3R 6024449 intergenic not near genes chr3R_7_6020001 chr3R_6020001 RAL-237 567 chr3R 6069320 6069355 chr3R 6069752 6069787 6 428 2.0 1.5 1.8 2.1 467 chr3R 6069320 intergenic not near genes chr3R 6069554 intergenic not near genes chr3R 6069787 intergenic not near genes chr3R_6_6065001 chr3R_6065001 RAL-237 568 chr3R 6188903 6188930 chr3R 6188979 6188981 10 74 4.0 3.0 3.5 2.2 78 chr3R 6188903 intron NPFR + chr3R 6188942 intron NPFR + chr3R 6188981 intron NPFR + chr3R_10_6185001 chr3R_6185001 RAL-237 569 chr3R 6395946 6395967 chr3R 6397416 6397437 5 1470 4.0 1.5 2.8 1.3 1491 chr3R 6395946 intron Dmtn - chr3R 6396692 intron Dmtn - chr3R 6397437 intron Dmtn - chr3R_5_6395001 chr3R_6395001 RAL-237 570 chr3R 6482863 6482890 chr3R 6482940 6482967 8 74 2.0 4.0 3.0 2.0 104 chr3R 6482863 intron CG15186 + chr3R 6482915 intron CG15186 + chr3R 6482967 intron CG15186 + chr3R_8_6480001 chr3R_6480001 RAL-237 571 chr3R 6737499 6737530 chr3R 6739286 6739310 Doc 9 1785 5.0 3.0 4.0 1.8 1811 chr3R 6737499 intron pb - chr3R 6738404 intron pb - chr3R 6739310 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-237 572 chr3R 6842780 6842810 chr3R 6842863 6842893 8 83 1.0 3.5 2.2 2.5 113 chr3R 6842780 intron Scr - chr3R 6842836 intron Scr - chr3R 6842893 intron Scr - chr3R_8_6840001 chr3R_6840001 RAL-237 573 chr3R 6958926 6958949 chr3R 6959135 6959160 6 210 3.5 0.5 2.0 2.0 234 chr3R 6958926 intron Antp - chr3R 6959043 intron Antp - chr3R 6959160 intron Antp - chr3R_6_6955001 chr3R_6955001 RAL-237 574 chr3R 6991176 6991208 chr3R 6991252 6991276 4 72 2.0 0.5 1.2 1.8 100 chr3R 6991176 intron Antp - chr3R 6991226 intron Antp - chr3R 6991276 intron Antp - chr3R_4_6990001 chr3R_6990001 RAL-237 575 chr3R 7092782 7092815 chr3R 7093346 7093379 5 563 1.0 3.5 2.2 1.6 597 chr3R 7092782 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093379 3` UTR CR43685 - chr3R_5_7090001 chr3R_7090001 RAL-237 576 chr3R 7126506 7126530 chr3R 7126601 7126625 4 95 1.0 0.5 0.8 2.2 119 chr3R 7126506 3` UTR CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126625 3` UTR CG10068 - chr3R_4_7125001 chr3R_7125001 RAL-237 577 chr3R 7269914 7269947 chr3R 7270007 7270041 7 94 2.0 1.5 1.8 2.5 127 chr3R 7269914 3` UTR Syt4 + chr3R 7269978 3` UTR Syt4 + chr3R 7270041 3` UTR Syt4 + chr3R_7_7265001 chr3R_7265001 RAL-237 578 chr3R 7304827 7304855 chr3R 7304908 7304941 8 79 7.0 7.5 7.2 1.0 114 chr3R 7304827 intron,exon rn -,CG42544 + chr3R 7304884 intron,exon rn -,CG42544 + chr3R 7304941 intron,exon rn -,CG42544 + chr3R_8_7300001 chr3R_7300001 RAL-237 579 chr3R 7328872 7328901 chr3R 7328955 7328958 5 78 1.0 0.0 0.5 3.3 86 chr3R 7328872 intergenic not near genes chr3R 7328915 intergenic not near genes chr3R 7328958 intergenic not near genes chr3R_5_7325001 chr3R_7325001 RAL-237 580 chr3R 7415991 7416009 chr3R 7416137 7416155 6 145 1.0 1.5 1.2 2.7 164 chr3R 7415991 intergenic not near genes chr3R 7416073 intergenic not near genes chr3R 7416155 intergenic not near genes chr3R_6_7415001 chr3R_7415001 RAL-237 581 chr3R 7511768 7511795 chr3R 7511849 7511876 5 80 2.0 2.5 2.2 1.6 108 chr3R 7511768 intron alpha-Est8 - chr3R 7511822 intron alpha-Est8 - chr3R 7511876 intron alpha-Est8 - chr3R_5_7510001 chr3R_7510001 RAL-237 582 chr3R 7857573 7857604 chr3R 7857660 7857691 4 87 2.5 1.5 2.0 1.3 118 chr3R 7857573 3` UTR CG17816 - chr3R 7857632 3` UTR CG17816 - chr3R 7857691 3` UTR CG17816 - chr3R_4_7855001 chr3R_7855001 RAL-237 583 chr3R 7883140 7883161 chr3R 7883217 7883239 4 78 1.0 1.5 1.2 1.8 99 chr3R 7883140 intron CG17816 - chr3R 7883190 intron CG17816 - chr3R 7883239 intron CG17816 - chr3R_4_7880001 chr3R_7880001 RAL-237 584 chr3R 7953350 7953372 chr3R 7953433 7953454 4 82 2.0 2.5 2.2 1.2 104 chr3R 7953350 intron dsx - chr3R 7953402 intron dsx - chr3R 7953454 intron dsx - chr3R_4_7950001 chr3R_7950001 RAL-237 585 chr3R 7955943 7955959 chr3R 7956020 7956024 6 75 1.0 2.0 1.5 2.4 81 chr3R 7955943 intron dsx - chr3R 7955984 intron dsx - chr3R 7956024 intron dsx - chr3R_6_7955001 chr3R_7955001 RAL-237 586 chr3R 8101765 8101790 chr3R 8104848 8104874 G2 4 3084 1.0 1.5 1.2 1.8 3109 chr3R 8101765 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-237 587 chr3R 8144766 8144787 chr3R 8144850 8144850 5 75 2.5 3.0 2.8 1.3 84 chr3R 8144766 intergenic not near genes chr3R 8144808 intergenic not near genes chr3R 8144850 intergenic not near genes chr3R_5_8140001 chr3R_8140001 RAL-237 588 chr3R 8213020 8213035 chr3R 8213101 8213118 4 82 7.0 1.0 4.0 0.8 98 chr3R 8213020 intergenic not near genes chr3R 8213069 intergenic not near genes chr3R 8213118 intergenic not near genes chr3R_4_8210001 chr3R_8210001 RAL-237 589 chr3R 8339246 8339247 chr3R 21907534 21907536 21 13568289 12.0 14.5 13.2 1.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_21_15120001 chr3R_15120001 RAL-237 590 chr3R 8393600 8393602 chr3R 8393665 8393686 5 79 3.5 5.0 4.2 1.0 86 chr3R 8393600 intron CG45263 - chr3R 8393643 intron CG45263 - chr3R 8393686 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-237 591 chr3R 8403015 8403035 chr3R 8412181 8412201 roo 6 9165 2.0 2.5 2.2 1.9 9186 chr3R 8403015 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412201 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-237 592 chr3R 8468185 8468203 chr3R 8468275 8468293 4 88 1.0 2.5 1.8 1.4 108 chr3R 8468185 intron CG45263 - chr3R 8468239 intron CG45263 - chr3R 8468293 intron CG45263 - chr3R_4_8465001 chr3R_8465001 RAL-237 593 chr3R 8570485 8570509 chr3R 8575121 8575145 HMS-Beagle 5 4636 0.5 4.0 2.2 1.6 4660 chr3R 8570485 intergenic not near genes chr3R 8572815 intergenic not near genes chr3R 8575145 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-237 594 chr3R 8621541 8621559 chr3R 8621618 8621623 4 74 5.0 7.0 6.0 0.6 82 chr3R 8621541 intron 5-HT2B + chr3R 8621582 intron 5-HT2B + chr3R 8621623 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-237 595 chr3R 8707366 8707385 chr3R 8709806 8709826 jockey 7 2440 2.5 2.0 2.2 2.2 2460 chr3R 8707366 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-237 596 chr3R 8856369 8856400 chr3R 8856446 8856477 4 77 0.5 1.5 1.0 2.0 108 chr3R 8856369 intron pyd - chr3R 8856423 intron pyd - chr3R 8856477 intron pyd - chr3R_4_8855001 chr3R_8855001 RAL-237 597 chr3R 8894870 8894901 chr3R 8896026 8896057 1360 4 1155 0.5 1.5 1.0 2.0 1187 chr3R 8894870 intron pyd - chr3R 8895464 intron pyd - chr3R 8896057 intron pyd - chr3R_4_8895001 chr3R_8895001 RAL-237 598 chr3R 8917889 8917905 chr3R 8917969 8917985 4 80 0.0 0.5 0.2 3.3 96 chr3R 8917889 intron pyd - chr3R 8917937 intron pyd - chr3R 8917985 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-237 599 chr3R 9319580 9319604 chr3R 9320013 9320039 jockey 4 434 0.5 2.5 1.5 1.6 459 chr3R 9319580 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320039 intron CG8861 - chr3R_4_9315001 chr3R_9315001 RAL-237 600 chr3R 9442289 9442319 chr3R 9442640 9442650 9 348 1.5 1.0 1.2 4.1 361 chr3R 9442289 intron ps + chr3R 9442470 intron ps + chr3R 9442650 intron ps + chr3R_9_9440001 chr3R_9440001 RAL-237 601 chr3R 9836871 9836896 chr3R 9836958 9836983 4 87 1.0 2.5 1.8 1.4 112 chr3R 9836871 intron Teh1 - chr3R 9836927 intron Teh1 - chr3R 9836983 intron Teh1 - chr3R_4_9835001 chr3R_9835001 RAL-237 602 chr3R 9942549 9942559 chr3R 9942863 9942868 5 312 2.0 2.5 2.2 1.6 319 chr3R 9942549 intron Glut4EF + chr3R 9942708 intron Glut4EF + chr3R 9942868 intron Glut4EF + chr3R_5_9940001 chr3R_9940001 RAL-237 603 chr3R 10078521 10078545 chr3R 10078648 10078672 5 127 1.5 1.0 1.2 2.3 151 chr3R 10078521 intergenic not near genes chr3R 10078596 intergenic not near genes chr3R 10078672 intergenic not near genes chr3R_5_10075001 chr3R_10075001 RAL-237 604 chr3R 10085952 10085975 chr3R 10086250 10086273 7 298 1.0 1.5 1.2 3.2 321 chr3R 10085952 intron CR45054 + chr3R 10086112 intron CR45054 + chr3R 10086273 intron CR45054 + chr3R_7_10085001 chr3R_10085001 RAL-237 605 chr3R 10231781 10231811 chr3R 10237357 10237388 mdg3 5 5576 1.5 0.0 0.8 2.8 5607 chr3R 10231781 intron CG42795 + chr3R 10234584 intron CG42795 + chr3R 10237388 intron CG42795 + chr3R_5_10230001 chr3R_10230001 RAL-237 606 chr3R 10971481 10971513 chr3R 10971571 10971604 10 87 3.0 2.5 2.8 2.6 123 chr3R 10971481 intergenic not near genes chr3R 10971542 intergenic not near genes chr3R 10971604 intergenic not near genes chr3R_10_10970001 chr3R_10970001 RAL-237 607 chr3R 11181859 11181881 chr3R 11181987 11182011 4 127 2.5 1.0 1.8 1.4 152 chr3R 11181859 intergenic not near genes chr3R 11181935 intergenic not near genes chr3R 11182011 intergenic not near genes chr3R_4_11180001 chr3R_11180001 RAL-237 608 chr3R 11242254 11242274 chr3R 11242343 11242362 6 89 2.5 2.0 2.2 1.9 108 chr3R 11242254 3` UTR CG17734 - chr3R 11242308 3` UTR CG17734 - chr3R 11242362 3` UTR CG17734 - chr3R_6_11240001 chr3R_11240001 RAL-237 609 chr3R 11303087 11303115 chr3R 11303167 11303179 10 76 1.5 4.0 2.8 2.6 92 chr3R 11303087 intron CR31386 - chr3R 11303133 intron CR31386 - chr3R 11303179 intron CR31386 - chr3R_10_11300001 chr3R_11300001 RAL-237 610 chr3R 11325343 11325367 chr3R 11325437 11325461 5 94 2.5 4.0 3.2 1.2 118 chr3R 11325343 intergenic not near genes chr3R 11325402 intergenic not near genes chr3R 11325461 intergenic not near genes chr3R_5_11325001 chr3R_11325001 RAL-237 611 chr3R 11379245 11379265 chr3R 11388400 11388419 roo 9 9155 4.0 2.5 3.2 2.1 9174 chr3R 11379245 intron pros + chr3R 11383832 intron pros + chr3R 11388419 intron pros + chr3R_9_11380001 chr3R_11380001 RAL-237 612 chr3R 11695743 11695772 chr3R 11695824 11695853 5 80 2.0 2.5 2.2 1.6 110 chr3R 11695743 intergenic not near genes chr3R 11695798 intergenic not near genes chr3R 11695853 intergenic not near genes chr3R_5_11695001 chr3R_11695001 RAL-237 613 chr3R 11710205 11710229 chr3R 11710282 11710307 6 78 1.0 1.0 1.0 3.0 102 chr3R 11710205 intergenic not near genes chr3R 11710256 intergenic not near genes chr3R 11710307 intergenic not near genes chr3R_6_11710001 chr3R_11710001 RAL-237 614 chr3R 11734164 11734187 chr3R 11734281 11734306 6 118 3.5 4.0 3.8 1.2 142 chr3R 11734164 intergenic not near genes chr3R 11734235 intergenic not near genes chr3R 11734306 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-237 615 chr3R 11841060 11841097 chr3R 11846251 11846287 BS 4 5190 2.0 1.5 1.8 1.4 5227 chr3R 11841060 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-237 616 chr3R 12369214 12369237 chr3R 12369336 12369341 4 111 2.5 3.5 3.0 1.0 127 chr3R 12369214 5` UTR GstD1 - chr3R 12369278 intergenic GstD1 - chr3R 12369341 intergenic GstD1 - chr3R_4_12365001 chr3R_12365001 RAL-237 617 chr3R 12546452 12546466 chr3R 12546535 12546549 5 83 2.0 1.5 1.8 1.8 97 chr3R 12546452 intron Octbeta3R - chr3R 12546500 intron Octbeta3R - chr3R 12546549 intron Octbeta3R - chr3R_5_12545001 chr3R_12545001 RAL-237 618 chr3R 12706472 12706495 chr3R 12715784 12715809 9 9313 31.0 13.0 22.0 0.4 9337 chr3R 12706472 exon mus308 - chr3R 12711140 exon mus308 - chr3R 12715809 intron Men - chr3R_9_12710001 chr3R_12710001 RAL-237 619 chr3R 12725947 12725970 chr3R 12726052 12726056 8 101 0.5 3.0 1.8 2.9 109 chr3R 12725947 intergenic not near genes chr3R 12726002 intergenic not near genes chr3R 12726056 intergenic not near genes chr3R_8_12725001 chr3R_12725001 RAL-237 620 chr3R 12733475 12733505 chr3R 12733551 12733582 6 74 2.5 0.0 1.2 2.7 107 chr3R 12733475 intergenic not near genes chr3R 12733528 intergenic not near genes chr3R 12733582 intergenic not near genes chr3R_6_12730001 chr3R_12730001 RAL-237 621 chr3R 13143040 13143055 chr3R 13148616 13148631 mdg3 4 5575 4.0 3.0 3.5 0.9 5591 chr3R 13143040 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148631 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-237 622 chr3R 13517225 13517230 chr3R 13520042 13520047 jockey 4 2817 3.5 0.0 1.8 1.4 2822 chr3R 13517225 intergenic not near genes chr3R 13518636 intergenic not near genes chr3R 13520047 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-237 623 chr3R 13563352 13563361 chr3R 13563429 13563436 4 76 5.0 9.5 7.2 0.5 84 chr3R 13563352 intergenic not near genes chr3R 13563394 intergenic not near genes chr3R 13563436 intergenic not near genes chr3R_4_13560001 chr3R_13560001 RAL-237 624 chr3R 13603055 13603352 chr3R 13603145 13603444 10 91 1.0 0.5 0.8 5.6 389 chr3R 13603055 intergenic not near genes chr3R 13603250 intergenic not near genes chr3R 13603444 intergenic not near genes chr3R_10_13600001 chr3R_13600001 RAL-237 625 chr3R 13603354 13603372 chr3R 13603445 13603464 6 92 0.5 3.0 1.8 2.1 110 chr3R 13603354 intergenic not near genes chr3R 13603409 intergenic not near genes chr3R 13603464 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-237 626 chr3R 13604058 13604088 chr3R 13604293 13604321 8 234 3.0 2.0 2.5 2.3 263 chr3R 13604058 intergenic not near genes chr3R 13604190 intergenic not near genes chr3R 13604321 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-237 627 chr3R 13606704 13606736 chr3R 13606851 13606883 6 147 3.0 1.0 2.0 2.0 179 chr3R 13606704 intergenic CG9759 - chr3R 13606794 intergenic CG9759 - chr3R 13606883 intergenic CG9759 - chr3R_6_13605001 chr3R_13605001 RAL-237 628 chr3R 13693028 13693029 chr3R 21907534 21907536 38 8214507 12.5 14.5 13.5 2.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_38_17800001 chr3R_17800001 RAL-237 629 chr3R 13861550 13861557 chr3R 13861617 13861637 4 74 6.0 5.5 5.8 0.6 87 chr3R 13861550 intergenic not near genes chr3R 13861594 intergenic not near genes chr3R 13861637 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-237 630 chr3R 14067148 14067155 chr3R 14067227 14067234 6 78 3.5 2.0 2.8 1.6 86 chr3R 14067148 exon foxo + chr3R 14067191 intron foxo + chr3R 14067234 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-237 631 chr3R 14173575 14173598 chr3R 14173674 14173697 4 99 1.0 0.5 0.8 2.2 122 chr3R 14173575 3` UTR Dop1R1 - chr3R 14173636 3` UTR Dop1R1 - chr3R 14173697 3` UTR Dop1R1 - chr3R_4_14170001 chr3R_14170001 RAL-237 632 chr3R 14353894 14353917 chr3R 14354196 14354214 4 301 2.5 3.0 2.8 1.1 320 chr3R 14353894 intron NK7.1 - chr3R 14354054 intron NK7.1 - chr3R 14354214 intron NK7.1 - chr3R_4_14350001 chr3R_14350001 RAL-237 633 chr3R 14386224 14386237 chr3R 14386308 14386321 4 84 0.0 0.5 0.2 3.3 97 chr3R 14386224 intergenic not near genes chr3R 14386272 intergenic not near genes chr3R 14386321 intergenic not near genes chr3R_4_14385001 chr3R_14385001 RAL-237 634 chr3R 14458889 14458904 chr3R 14458970 14458985 5 80 1.5 1.5 1.5 2.0 96 chr3R 14458889 intron cv-c - chr3R 14458937 intron cv-c - chr3R 14458985 intron cv-c - chr3R_5_14455001 chr3R_14455001 RAL-237 635 chr3R 14526346 14526362 chr3R 14526526 14526542 4 180 3.5 4.5 4.0 0.8 196 chr3R 14526346 intron Pde6 - chr3R 14526444 intron Pde6 - chr3R 14526542 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-237 636 chr3R 14549039 14549058 chr3R 14549125 14549145 12 87 1.5 1.5 1.5 4.8 106 chr3R 14549039 intron Pde6 - chr3R 14549092 intron Pde6 - chr3R 14549145 intron Pde6 - chr3R_12_14545001 chr3R_14545001 RAL-237 637 chr3R 14560681 14560683 chr3R 14560876 14560878 4 195 0.5 4.5 2.5 1.1 197 chr3R 14560681 intergenic CG14850 + chr3R 14560780 intergenic CG14850 + chr3R 14560878 intergenic CG14850 + chr3R_4_14560001 chr3R_14560001 RAL-237 638 chr3R 14869872 14869895 chr3R 14869962 14869986 4 90 0.5 1.5 1.0 2.0 114 chr3R 14869872 intron btsz - chr3R 14869929 intron btsz - chr3R 14869986 intron btsz - chr3R_4_14865001 chr3R_14865001 RAL-237 639 chr3R 14902163 14902185 chr3R 14902309 14902331 5 146 1.0 0.5 0.8 2.8 168 chr3R 14902163 intergenic VhaPPA1-1 - chr3R 14902247 intergenic VhaPPA1-1 - chr3R 14902331 3` UTR VhaPPA1-1 - chr3R_5_14900001 chr3R_14900001 RAL-237 640 chr3R 15049463 15049477 chr3R 15049589 15049603 5 126 0.0 0.5 0.2 4.2 140 chr3R 15049463 intergenic not near genes chr3R 15049533 intergenic not near genes chr3R 15049603 intergenic not near genes chr3R_5_15045001 chr3R_15045001 RAL-237 641 chr3R 15265406 15265432 chr3R 15265490 15265517 4 85 0.0 1.0 0.5 2.7 111 chr3R 15265406 intergenic Set +,Oscp + chr3R 15265462 intergenic Oscp +,Set + chr3R 15265517 intergenic Oscp +,Set + chr3R_4_15265001 chr3R_15265001 RAL-237 642 chr3R 15286987 15286988 chr3R 21907534 21907536 27 6620548 17.0 14.5 15.8 1.6 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_27_18595001 chr3R_18595001 RAL-237 643 chr3R 15305874 15305880 chr3R 15305947 15305971 5 84 11.0 6.0 8.5 0.5 97 chr3R 15305874 intron Tm1 + chr3R 15305922 intron Tm1 + chr3R 15305971 intron Tm1 + chr3R_5_15305001 chr3R_15305001 RAL-237 644 chr3R 15305889 15305891 chr3R 15305946 15305976 4 81 6.0 6.0 6.0 0.6 87 chr3R 15305889 intron Tm1 + chr3R 15305932 intron Tm1 + chr3R 15305976 intron Tm1 + chr3R_4_15305001 chr3R_15305001 RAL-237 645 chr3R 15416251 15416275 chr3R 15416331 15416355 6 78 5.5 3.5 4.5 1.1 104 chr3R 15416251 3` UTR Atx2 + chr3R 15416303 3` UTR Atx2 + chr3R 15416355 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-237 646 chr3R 15517600 15517633 chr3R 15517683 15517713 5 77 1.5 1.5 1.5 2.0 113 chr3R 15517600 intergenic not near genes chr3R 15517656 intergenic not near genes chr3R 15517713 intergenic not near genes chr3R_5_15515001 chr3R_15515001 RAL-237 647 chr3R 15676555 15676578 chr3R 15676634 15676639 5 75 0.5 0.5 0.5 3.3 84 chr3R 15676555 intron pxb + chr3R 15676597 intron pxb + chr3R 15676639 intron pxb + chr3R_5_15675001 chr3R_15675001 RAL-237 648 chr3R 15691186 15691326 chr3R 15691291 15691413 4 91 0.0 0.0 0.0 4.0 227 chr3R 15691186 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691413 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-237 649 chr3R 15868947 15868961 chr3R 15869027 15869041 6 80 3.5 0.0 1.8 2.1 94 chr3R 15868947 intron CG31183 - chr3R 15868994 intron CG31183 - chr3R 15869041 intron CG31183 - chr3R_6_15865001 chr3R_15865001 RAL-237 650 chr3R 15937422 15937441 chr3R 15937509 15937528 9 83 4.0 1.5 2.8 2.4 106 chr3R 15937422 intron Sap47 + chr3R 15937475 intron Sap47 + chr3R 15937528 intron Sap47 + chr3R_9_15935001 chr3R_15935001 RAL-237 651 chr3R 16048850 16048875 chr3R 16048940 16048963 7 86 6.0 2.0 4.0 1.4 113 chr3R 16048850 intron ird5 - chr3R 16048906 intron ird5 - chr3R 16048963 intron ird5 - chr3R_7_16045001 chr3R_16045001 RAL-237 652 chr3R 16073444 16073471 chr3R 16073548 16073570 5 103 2.0 0.5 1.2 2.3 126 chr3R 16073444 intron Mhcl - chr3R 16073507 intron Mhcl - chr3R 16073570 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-237 653 chr3R 16374305 16374325 chr3R 16374422 16374442 5 117 1.0 3.0 2.0 1.7 137 chr3R 16374305 intergenic ss - chr3R 16374374 intergenic ss - chr3R 16374442 3` UTR ss - chr3R_5_16370001 chr3R_16370001 RAL-237 654 chr3R 16491931 16491963 chr3R 16500667 16500699 14 8737 39.0 32.5 35.8 0.4 8768 chr3R 16491931 exon Cad89D - chr3R 16496315 intergenic not near genes chr3R 16500699 exon decay - chr3R_14_16495001 chr3R_16495001 RAL-237 655 chr3R 16582907 16582915 chr3R 16582986 16582994 4 77 4.0 2.5 3.2 1.0 87 chr3R 16582907 intron Scp2 - chr3R 16582950 intron Scp2 - chr3R 16582994 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-237 656 chr3R 16779439 16779456 chr3R 16779525 16779543 5 85 3.5 3.0 3.2 1.2 104 chr3R 16779439 intergenic not near genes chr3R 16779491 intergenic not near genes chr3R 16779543 intergenic not near genes chr3R_5_16775001 chr3R_16775001 RAL-237 657 chr3R 17066783 17066811 chr3R 17066871 17066880 9 83 2.5 3.0 2.8 2.4 97 chr3R 17066783 intron Dad + chr3R 17066832 intron Dad + chr3R 17066880 intron Dad + chr3R_9_17065001 chr3R_17065001 RAL-237 658 chr3R 17194408 17194432 chr3R 17194487 17194500 7 76 2.0 3.0 2.5 2.0 92 chr3R 17194408 intron Mur89F - chr3R 17194454 intron Mur89F - chr3R 17194500 intron Mur89F - chr3R_7_17190001 chr3R_17190001 RAL-237 659 chr3R 17209703 17209720 chr3R 17209788 17209808 4 87 1.5 5.0 3.2 1.0 105 chr3R 17209703 intergenic not near genes chr3R 17209756 intergenic not near genes chr3R 17209808 intergenic not near genes chr3R_4_17205001 chr3R_17205001 RAL-237 660 chr3R 17268674 17268693 chr3R 17268796 17268815 4 122 0.5 2.5 1.5 1.6 141 chr3R 17268674 intergenic not near genes chr3R 17268744 intergenic not near genes chr3R 17268815 intergenic not near genes chr3R_4_17265001 chr3R_17265001 RAL-237 661 chr3R 17273968 17273991 chr3R 17274075 17274096 4 106 1.0 1.5 1.2 1.8 128 chr3R 17273968 intergenic not near genes chr3R 17274032 intergenic not near genes chr3R 17274096 intergenic not near genes chr3R_4_17270001 chr3R_17270001 RAL-237 662 chr3R 17294673 17294698 chr3R 17295100 17295126 BS 8 428 1.0 3.0 2.0 2.7 453 chr3R 17294673 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295126 intergenic not near genes chr3R_8_17290001 chr3R_17290001 RAL-237 663 chr3R 17521576 17521581 chr3R 17521732 17521738 4 158 1.0 7.5 4.2 0.8 162 chr3R 17521576 intergenic not near genes chr3R 17521657 intergenic not near genes chr3R 17521738 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-237 664 chr3R 17521582 17521588 chr3R 17521726 17521748 4 155 1.0 5.5 3.2 1.0 166 chr3R 17521582 intergenic not near genes chr3R 17521665 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-237 665 chr3R 17531906 17531913 chr3R 17531982 17531990 4 77 1.0 6.0 3.5 0.9 84 chr3R 17531906 intergenic CG5823 - chr3R 17531948 intergenic CG5823 - chr3R 17531990 intergenic CG5823 - chr3R_4_17530001 chr3R_17530001 RAL-237 666 chr3R 17845204 17845214 chr3R 17845281 17845291 5 76 3.5 4.5 4.0 1.0 87 chr3R 17845204 intron tinc + chr3R 17845248 intron tinc + chr3R 17845291 intron tinc + chr3R_5_17845001 chr3R_17845001 RAL-237 667 chr3R 17925858 17925889 chr3R 17927325 17927356 hobo 13 1464 2.0 4.0 3.0 3.2 1498 chr3R 17925858 intron cpo + chr3R 17926607 intron cpo + chr3R 17927356 intron cpo + chr3R_13_17925001 chr3R_17925001 RAL-237 668 chr3R 18064730 18064765 chr3R 18064811 18064845 6 81 0.5 1.0 0.8 3.3 115 chr3R 18064730 intergenic not near genes chr3R 18064788 intergenic not near genes chr3R 18064845 intergenic not near genes chr3R_6_18060001 chr3R_18060001 RAL-237 669 chr3R 18089071 18089105 chr3R 18089156 18089185 7 84 1.0 1.5 1.2 3.2 114 chr3R 18089071 intergenic not near genes chr3R 18089128 intergenic not near genes chr3R 18089185 intergenic not near genes chr3R_7_18085001 chr3R_18085001 RAL-237 670 chr3R 18235214 18235244 chr3R 18235390 18235405 13 171 3.5 3.5 3.5 2.9 191 chr3R 18235214 intergenic not near genes chr3R 18235310 intergenic not near genes chr3R 18235405 intergenic not near genes chr3R_13_18235001 chr3R_18235001 RAL-237 671 chr3R 18703287 18703314 chr3R 18703395 18703422 8 108 1.0 0.0 0.5 5.3 135 chr3R 18703287 intergenic not near genes chr3R 18703354 intergenic not near genes chr3R 18703422 intergenic not near genes chr3R_8_18700001 chr3R_18700001 RAL-237 672 chr3R 18730024 18730035 chr3R 18730100 18730111 5 76 6.0 3.0 4.5 0.9 87 chr3R 18730024 intron Cha + chr3R 18730068 intron Cha + chr3R 18730111 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-237 673 chr3R 18791496 18791522 chr3R 18791575 18791584 4 72 1.5 3.0 2.2 1.2 88 chr3R 18791496 intron CG7720 - chr3R 18791540 intron CG7720 - chr3R 18791584 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-237 674 chr3R 18812078 18812106 chr3R 18812156 18812184 4 78 1.0 2.0 1.5 1.6 106 chr3R 18812078 intron CG18208 - chr3R 18812131 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_4_18810001 chr3R_18810001 RAL-237 675 chr3R 19014090 19014123 chr3R 19014170 19014182 20 77 3.5 8.0 5.8 2.9 92 chr3R 19014090 intron gukh + chr3R 19014136 intron gukh + chr3R 19014182 intron gukh + chr3R_20_19010001 chr3R_19010001 RAL-237 676 chr3R 19054527 19054554 chr3R 19054649 19054664 4 119 0.0 4.0 2.0 1.3 137 chr3R 19054527 intron cdi - chr3R 19054596 intron cdi - chr3R 19054664 intron cdi - chr3R_4_19050001 chr3R_19050001 RAL-237 677 chr3R 19109227 19109248 chr3R 19109338 19109360 7 109 0.5 1.0 0.8 3.9 133 chr3R 19109227 intron CG6040 + chr3R 19109294 intron CG6040 + chr3R 19109360 intron CG6040 + chr3R_7_19105001 chr3R_19105001 RAL-237 678 chr3R 19187018 19187048 chr3R 19187097 19187126 4 78 2.0 0.0 1.0 2.0 108 chr3R 19187018 intron CG31475 + chr3R 19187072 intron CG31475 + chr3R 19187126 intron CG31475 + chr3R_4_19185001 chr3R_19185001 RAL-237 679 chr3R 19570312 19570337 chr3R 19570386 19570413 6 75 1.5 0.5 1.0 3.0 101 chr3R 19570312 intron Dys + chr3R 19570362 intron Dys + chr3R 19570413 intron Dys + chr3R_6_19570001 chr3R_19570001 RAL-237 680 chr3R 19914010 19914040 chr3R 19914103 19914133 9 92 3.0 0.5 1.8 3.2 123 chr3R 19914010 3` UTR RhoGAP92B + chr3R 19914072 3` UTR RhoGAP92B + chr3R 19914133 3` UTR RhoGAP92B + chr3R_9_19910001 chr3R_19910001 RAL-237 681 chr3R 20205410 20205593 chr3R 20205527 20205715 5 118 1.0 1.5 1.2 2.3 305 chr3R 20205410 intron Nlg4 + chr3R 20205562 intron Nlg4 + chr3R 20205715 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-237 682 chr3R 20245279 20245292 chr3R 20248889 20248902 F-element 4 3610 2.0 0.5 1.2 1.8 3623 chr3R 20245279 3` UTR Nlg4 + chr3R 20247090 intergenic not near genes chr3R 20248902 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-237 683 chr3R 20312856 20312885 chr3R 20312942 20312971 4 86 2.0 0.0 1.0 2.0 115 chr3R 20312856 intron CG42668 + chr3R 20312914 intron CG42668 + chr3R 20312971 intron CG42668 + chr3R_4_20310001 chr3R_20310001 RAL-237 684 chr3R 20672028 20672051 chr3R 20672187 20672207 10 158 4.5 8.0 6.2 1.4 179 chr3R 20672028 exon Cpr92F + chr3R 20672118 exon Cpr92F + chr3R 20672207 exon Cpr92F + chr3R_10_20670001 chr3R_20670001 RAL-237 685 chr3R 20686969 20686992 chr3R 20687404 20687425 8 434 2.0 3.5 2.8 2.1 456 chr3R 20686969 intergenic not near genes chr3R 20687197 intergenic not near genes chr3R 20687425 intergenic not near genes chr3R_8_20685001 chr3R_20685001 RAL-237 686 chr3R 20787437 20787453 chr3R 20787528 20787544 6 90 0.5 1.0 0.8 3.3 107 chr3R 20787437 intron Syp + chr3R 20787490 intron Syp + chr3R 20787544 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-237 687 chr3R 20835291 20835308 chr3R 20835427 20835444 6 135 1.5 3.5 2.5 1.7 153 chr3R 20835291 exon Synd + chr3R 20835368 intron Synd + chr3R 20835444 intron Synd + chr3R_6_20835001 chr3R_20835001 RAL-237 688 chr3R 20870262 20870275 chr3R 20870346 20870359 4 84 1.0 2.0 1.5 1.6 97 chr3R 20870262 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870359 intergenic not near genes chr3R_4_20870001 chr3R_20870001 RAL-237 689 chr3R 20932311 20932348 chr3R 20932387 20932422 13 75 2.5 2.0 2.2 4.1 111 chr3R 20932311 intron CG31191 - chr3R 20932366 intron CG31191 - chr3R 20932422 intron CG31191 - chr3R_13_20930001 chr3R_20930001 RAL-237 690 chr3R 21154550 21154585 chr3R 21154755 21154800 17 213 4.0 0.5 2.2 5.3 250 chr3R 21154550 intron SNF4Agamma + chr3R 21154675 intron SNF4Agamma + chr3R 21154800 intron SNF4Agamma + chr3R_17_21150001 chr3R_21150001 RAL-237 691 chr3R 21274382 21274615 chr3R 21274474 21274697 5 91 4.5 2.5 3.5 1.1 315 chr3R 21274382 3` UTR CG3301 - chr3R 21274540 3` UTR CG3301 - chr3R 21274697 intron CG3301 - chr3R_5_21270001 chr3R_21270001 RAL-237 692 chr3R 21322977 21323002 chr3R 21323053 21323078 8 78 2.0 0.0 1.0 4.0 101 chr3R 21322977 intron CG16791 - chr3R 21323028 intron CG16791 - chr3R 21323078 intron CG16791 - chr3R_8_21320001 chr3R_21320001 RAL-237 693 chr3R 21385705 21385962 chr3R 21385787 21386039 5 77 0.0 0.0 0.0 5.0 334 chr3R 21385705 intergenic not near genes chr3R 21385872 intergenic not near genes chr3R 21386039 intergenic not near genes chr3R_5_21385001 chr3R_21385001 RAL-237 694 chr3R 21518254 21518270 chr3R 21518335 21518354 5 82 0.0 2.0 1.0 2.5 100 chr3R 21518254 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518354 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-237 695 chr3R 21609021 21609031 chr3R 21611639 21611665 NOF 4 2630 2.0 2.5 2.2 1.2 2644 chr3R 21609021 intron InR - chr3R 21610343 intron InR - chr3R 21611665 intron InR - chr3R_4_21610001 chr3R_21610001 RAL-237 696 chr3R 21761120 21761146 chr3R 21768511 21768515 mdg1 7 7386 2.5 1.5 2.0 2.3 7395 chr3R 21761120 exon CG42335 + chr3R 21764818 intron CG42335 + chr3R 21768515 intron CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-237 697 chr3R 21784858 21784886 chr3R 21784955 21784984 4 97 1.0 0.0 0.5 2.7 126 chr3R 21784858 3` UTR,3` UTR CASK -,CRG - chr3R 21784921 3` UTR,3` UTR CASK -,CRG - chr3R 21784984 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-237 698 chr3R 21800489 21800518 chr3R 21800574 21800603 5 85 0.5 1.0 0.8 2.8 114 chr3R 21800489 intron CASK - chr3R 21800546 intron CASK - chr3R 21800603 intron CASK - chr3R_5_21800001 chr3R_21800001 RAL-237 699 chr3R 8339246 8339246 chr3R 21907534 21907534 4 13568288 12.0 14.5 13.2 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-237 700 chr3R 13104419 13104420 chr3R 21907534 21907534 5 8803114 20.0 14.5 17.2 0.3 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-237 701 chr3R 13693027 13693028 chr3R 21907534 21907534 5 8214506 12.5 14.5 13.5 0.3 8214507 chr3R 13693027 3` UTR flfl + chr3R 17800280 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-237 702 chr3R 17389054 17389054 chr3R 21907534 21907534 9 4518480 12.5 14.5 13.5 0.6 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_9_19645001 chr3R_19645001 RAL-237 703 chr3R 21907534 21907534 chr3R 26659332 26659337 4 4751800 15.0 14.5 14.8 0.3 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-237 704 chr3R 21907534 21907534 chr3R 28831801 28831805 43 6924268 15.0 19.0 17.0 2.4 6924271 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-237 705 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 12.0 15.0 13.5 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-237 706 chr3R 13104420 13104420 chr3R 21907535 21907535 9 8803115 20.0 15.0 17.5 0.5 8803115 chr3R 13104420 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_9_17505001 chr3R_17505001 RAL-237 707 chr3R 17389054 17389054 chr3R 21907535 21907535 4 4518481 12.5 15.0 13.8 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-237 708 chr3R 19457915 19457915 chr3R 21907535 21907535 4 2449620 2.5 15.0 8.8 0.4 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-237 709 chr3R 20177844 20177845 chr3R 21907535 21907535 9 1729690 2.5 15.0 8.8 0.9 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_9_21040001 chr3R_21040001 RAL-237 710 chr3R 21554043 21554214 chr3R 21907535 21907535 4 353437 22.0 15.0 18.5 0.2 353492 chr3R 21554043 intron slou - chr3R 21730789 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_21730001 chr3R_21730001 RAL-237 711 chr3R 21907535 21907535 chr3R 26659333 26659336 5 4751800 15.5 15.5 15.5 0.3 4751801 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-237 712 chr3R 21907535 21907535 chr3R 28831799 28831804 80 6924266 15.5 20.0 17.8 4.3 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_80_25365001 chr3R_25365001 RAL-237 713 chr3R 13693028 13693028 chr3R 21907536 21907536 4 8214508 12.5 15.0 13.8 0.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-237 714 chr3R 17389054 17389054 chr3R 21907536 21907536 5 4518482 12.5 15.0 13.8 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-237 715 chr3R 21337429 21337429 chr3R 21907536 21907536 4 570107 10.0 15.0 12.5 0.3 570107 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907536 intergenic CG6678 + chr3R_4_21620001 chr3R_21620001 RAL-237 716 chr3R 21907536 21907536 chr3R 26659332 26659337 4 4751798 15.5 14.5 15.0 0.2 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-237 717 chr3R 21907536 21907536 chr3R 27586204 27586204 6 5678668 15.5 4.5 10.0 0.5 5678668 chr3R 21907536 intergenic CG6678 + chr3R 24746870 exon tok + chr3R 27586204 3` UTR raps + chr3R_6_24745001 chr3R_24745001 RAL-237 718 chr3R 21907536 21907536 chr3R 28831797 28831802 68 6924266 15.5 20.0 17.8 3.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-237 719 chr3R 21907536 21907536 chr3R 29013339 29013340 5 7105803 15.5 13.5 14.5 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-237 720 chr3R 22450541 22450573 chr3R 22453181 22453211 NOF 9 2639 2.5 2.5 2.5 2.6 2670 chr3R 22450541 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453211 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-237 721 chr3R 22507809 22507819 chr3R 22507872 22507903 4 79 2.0 0.0 1.0 2.0 94 chr3R 22507809 intron Octbeta1R + chr3R 22507856 intron Octbeta1R + chr3R 22507903 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-237 722 chr3R 22516410 22516424 chr3R 22516486 22516517 16 89 3.5 5.0 4.2 3.1 107 chr3R 22516410 intron Octbeta1R + chr3R 22516464 intron Octbeta1R + chr3R 22516517 intron Octbeta1R + chr3R_16_22515001 chr3R_22515001 RAL-237 723 chr3R 22528287 22528316 chr3R 22528372 22528372 6 78 1.5 2.5 2.0 2.0 85 chr3R 22528287 intron CG5346 - chr3R 22528330 intron CG5346 - chr3R 22528372 intron CG5346 - chr3R_6_22525001 chr3R_22525001 RAL-237 724 chr3R 22632875 22632902 chr3R 22632964 22632992 8 89 0.5 2.5 1.5 3.2 117 chr3R 22632875 intron loco - chr3R 22632934 intron loco - chr3R 22632992 intron loco - chr3R_8_22630001 chr3R_22630001 RAL-237 725 chr3R 22711243 22711247 chr3R 22711312 22711320 5 74 2.5 8.0 5.2 0.8 77 chr3R 22711243 3` UTR wge - chr3R 22711282 3` UTR wge - chr3R 22711320 3` UTR wge - chr3R_5_22710001 chr3R_22710001 RAL-237 726 chr3R 22709925 22709957 chr3R 22712430 22712459 9 2502 19.0 11.5 15.2 0.6 2534 chr3R 22709925 intron CG4907 - chr3R 22711192 3` UTR wge - chr3R 22712459 exon wge - chr3R_9_22710001 chr3R_22710001 RAL-237 727 chr3R 22803441 22803470 chr3R 22803632 22803661 14 190 2.0 1.5 1.8 5.0 220 chr3R 22803441 intergenic not near genes chr3R 22803551 intergenic not near genes chr3R 22803661 intergenic not near genes chr3R_14_22800001 chr3R_22800001 RAL-237 728 chr3R 22842387 22842416 chr3R 22842486 22842515 10 99 4.5 4.0 4.2 1.9 128 chr3R 22842387 intergenic not near genes chr3R 22842451 intergenic not near genes chr3R 22842515 intergenic not near genes chr3R_10_22840001 chr3R_22840001 RAL-237 729 chr3R 22926816 22926827 chr3R 22926904 22926917 4 89 1.5 3.5 2.5 1.1 101 chr3R 22926816 intron klg + chr3R 22926866 intron klg + chr3R 22926917 intron klg + chr3R_4_22925001 chr3R_22925001 RAL-237 730 chr3R 22927874 22927902 chr3R 22927966 22927996 8 92 3.5 5.0 4.2 1.5 122 chr3R 22927874 intron klg + chr3R 22927935 intron klg + chr3R 22927996 intron klg + chr3R_8_22925001 chr3R_22925001 RAL-237 731 chr3R 23064174 23064205 chr3R 23064283 23064314 23 107 3.0 7.0 5.0 3.8 140 chr3R 23064174 exon CG17111 - chr3R 23064244 intron CG17111 - chr3R 23064314 exon CG17111 - chr3R_23_23060001 chr3R_23060001 RAL-237 732 chr3R 23064885 23064889 chr3R 23064976 23064980 5 91 0.0 4.0 2.0 1.7 95 chr3R 23064885 intron CG17111 - chr3R 23064932 intron CG17111 - chr3R 23064980 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-237 733 chr3R 23113453 23113476 chr3R 23113723 23113723 5 264 5.0 3.5 4.2 1.0 270 chr3R 23113453 intergenic not near genes chr3R 23113588 intergenic Rassf - chr3R 23113723 intergenic Rassf - chr3R_5_23110001 chr3R_23110001 RAL-237 734 chr3R 23338901 23338916 chr3R 23338976 23338991 5 75 3.5 2.5 3.0 1.2 90 chr3R 23338901 intron pnt - chr3R 23338946 intron pnt - chr3R 23338991 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-237 735 chr3R 23497966 23497975 chr3R 23498032 23498056 4 79 0.5 0.5 0.5 2.7 90 chr3R 23497966 intergenic not near genes chr3R 23498011 intergenic not near genes chr3R 23498056 intergenic not near genes chr3R_4_23495001 chr3R_23495001 RAL-237 736 chr3R 10451877 10451877 chr3R 23614722 23614722 8 13162845 4.5 2.0 3.2 1.9 13162845 chr3R 10451877 intergenic not near genes chr3R 17033300 3` UTR CG31268 + chr3R 23614722 intron CG31145 - chr3R_8_17030001 chr3R_17030001 RAL-237 737 chr3R 23678418 23678445 chr3R 23678504 23678531 8 86 2.0 1.5 1.8 2.9 113 chr3R 23678418 3` UTR CG13822 + chr3R 23678474 intergenic CG13822 +,CG10157 + chr3R 23678531 intergenic CG13822 +,CG10157 + chr3R_8_23675001 chr3R_23675001 RAL-237 738 chr3R 23684706 23684724 chr3R 23685191 23685209 roo 4 485 3.5 6.0 4.8 0.7 503 chr3R 23684706 intron CG18754 + chr3R 23684958 intron CG18754 + chr3R 23685209 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-237 739 chr3R 23944910 23944931 chr3R 23944995 23945016 11 85 7.5 5.0 6.2 1.5 106 chr3R 23944910 intron CG12268 - chr3R 23944963 intron CG12268 - chr3R 23945016 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-237 740 chr3R 23949042 23949069 chr3R 23949119 23949146 9 77 2.0 2.5 2.2 2.8 104 chr3R 23949042 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_9_23945001 chr3R_23945001 RAL-237 741 chr3R 23967216 23967246 chr3R 23967784 23967814 9 568 1.5 2.5 2.0 3.0 598 chr3R 23967216 intron CG31140 + chr3R 23967515 intron CG31140 + chr3R 23967814 intron CG31140 + chr3R_9_23965001 chr3R_23965001 RAL-237 742 chr3R 24011671 24011680 chr3R 24011754 24011761 4 82 0.0 6.0 3.0 1.0 90 chr3R 24011671 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011761 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-237 743 chr3R 24015066 24015085 chr3R 24015141 24015161 4 74 0.5 0.0 0.2 3.3 95 chr3R 24015066 intron KrT95D - chr3R 24015114 intron KrT95D - chr3R 24015161 intron KrT95D - chr3R_4_24015001 chr3R_24015001 RAL-237 744 chr3R 24041998 24042025 chr3R 24042109 24042137 4 112 1.5 2.5 2.0 1.3 139 chr3R 24041998 3` UTR spas + chr3R 24042068 3` UTR spas + chr3R 24042137 3` UTR spas + chr3R_4_24040001 chr3R_24040001 RAL-237 745 chr3R 24072086 24072116 chr3R 24072522 24072553 jockey 13 436 2.5 4.0 3.2 3.1 467 chr3R 24072086 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072553 intron 4EHP - chr3R_13_24070001 chr3R_24070001 RAL-237 746 chr3R 24199757 24199770 chr3R 24199837 24199850 4 80 1.0 3.5 2.2 1.2 93 chr3R 24199757 intron twin - chr3R 24199804 intron twin - chr3R 24199850 intron twin - chr3R_4_24195001 chr3R_24195001 RAL-237 747 chr3R 24433477 24433488 chr3R 24433555 24433567 4 78 2.5 2.5 2.5 1.1 90 chr3R 24433477 intron nAChRalpha1 - chr3R 24433522 intron nAChRalpha1 - chr3R 24433567 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-237 748 chr3R 24730098 24730113 chr3R 24732476 24732488 Doc 5 2377 6.5 0.5 3.5 1.1 2390 chr3R 24730098 intron tok + chr3R 24731293 intron tok + chr3R 24732488 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-237 749 chr3R 24743048 24743056 chr3R 24743133 24743141 7 83 1.5 5.5 3.5 1.6 93 chr3R 24743048 intron tok + chr3R 24743094 intron tok + chr3R 24743141 intron tok + chr3R_7_24740001 chr3R_24740001 RAL-237 750 chr3R 24789982 24790013 chr3R 24790127 24790158 8 145 1.0 2.5 1.8 2.9 176 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790158 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-237 751 chr3R 24927122 24927150 chr3R 24931913 24931940 Doc 9 4790 4.0 3.0 3.5 2.0 4818 chr3R 24927122 intergenic Trf4-2 + chr3R 24929531 intergenic not near genes chr3R 24931940 intergenic CG11771 + chr3R_9_24925001 chr3R_24925001 RAL-237 752 chr3R 24973963 24973985 chr3R 24974038 24974040 5 71 3.5 2.5 3.0 1.2 77 chr3R 24973963 intergenic not near genes chr3R 24974002 intergenic not near genes chr3R 24974040 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-237 753 chr3R 25008206 25008219 chr3R 25008282 25008294 4 76 6.5 5.0 5.8 0.6 88 chr3R 25008206 intron tnc + chr3R 25008250 intron tnc + chr3R 25008294 intron tnc + chr3R_4_25005001 chr3R_25005001 RAL-237 754 chr3R 25161504 25161528 chr3R 25161607 25161625 5 101 2.5 0.0 1.2 2.3 121 chr3R 25161504 intergenic not near genes chr3R 25161564 intergenic not near genes chr3R 25161625 intergenic not near genes chr3R_5_25160001 chr3R_25160001 RAL-237 755 chr3R 25588071 25588101 chr3R 25588149 25588172 5 76 1.0 0.5 0.8 2.8 101 chr3R 25588071 intron msi + chr3R 25588122 intron msi + chr3R 25588172 intron msi + chr3R_5_25585001 chr3R_25585001 RAL-237 756 chr3R 25738635 25738664 chr3R 25738723 25738750 6 88 0.5 0.0 0.2 5.0 115 chr3R 25738635 intron LpR2 - chr3R 25738692 intron LpR2 - chr3R 25738750 intron LpR2 - chr3R_6_25735001 chr3R_25735001 RAL-237 757 chr3R 25832710 25832724 chr3R 25841872 25841906 roo 7 9175 3.0 7.5 5.2 1.1 9196 chr3R 25832710 exon alpha4GT2 + chr3R 25837308 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_7_25835001 chr3R_25835001 RAL-237 758 chr3R 25936387 25936414 chr3R 25936465 25936492 6 78 3.0 1.5 2.2 1.9 105 chr3R 25936387 intron CCAP-R - chr3R 25936440 intron CCAP-R - chr3R 25936492 intron CCAP-R - chr3R_6_25935001 chr3R_25935001 RAL-237 759 chr3R 26060407 26060430 chr3R 26060493 26060516 13 85 5.0 6.5 5.8 1.9 109 chr3R 26060407 intron CG14544 + chr3R 26060462 intron CG14544 + chr3R 26060516 intron CG14544 + chr3R_13_26060001 chr3R_26060001 RAL-237 760 chr3R 26122463 26122477 chr3R 26122539 26122553 5 74 4.0 2.0 3.0 1.2 90 chr3R 26122463 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122553 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-237 761 chr3R 26376323 26376353 chr3R 26385483 26385513 roo 6 9159 0.5 0.5 0.5 4.0 9190 chr3R 26376323 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385513 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-237 762 chr3R 26558328 26558360 chr3R 26565640 26565660 Stalker4 6 7310 0.5 3.0 1.8 2.1 7332 chr3R 26558328 intron scrib + chr3R 26561994 intron scrib + chr3R 26565660 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-237 763 chr3R 26642749 26642755 chr3R 26643143 26643149 jockey 4 394 1.0 3.5 2.2 1.2 400 chr3R 26642749 intergenic not near genes chr3R 26642949 intergenic not near genes chr3R 26643149 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-237 764 chr3R 21907534 21907536 chr3R 26659332 26659336 11 4751800 15.5 14.5 15.0 0.7 4751802 chr3R 21907534 intergenic CG6678 + chr3R 24283435 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_11_24280001 chr3R_24280001 RAL-237 765 chr3R 26845570 26845604 chr3R 26845650 26845684 20 80 2.0 1.5 1.8 7.1 114 chr3R 26845570 intron Lerp - chr3R 26845627 intron Lerp - chr3R 26845684 intron Lerp - chr3R_20_26845001 chr3R_26845001 RAL-237 766 chr3R 27028731 27028756 chr3R 27028810 27028835 5 79 0.5 1.0 0.8 2.8 104 chr3R 27028731 intron RYa-R + chr3R 27028783 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-237 767 chr3R 27029167 27029201 chr3R 27029245 27029279 5 78 2.5 1.0 1.8 1.8 112 chr3R 27029167 intron RYa-R + chr3R 27029223 intron RYa-R + chr3R 27029279 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-237 768 chr3R 27034773 27034793 chr3R 27034857 27034870 4 82 1.5 0.5 1.0 2.0 97 chr3R 27034773 intron RYa-R + chr3R 27034822 intron RYa-R + chr3R 27034870 intron RYa-R + chr3R_4_27030001 chr3R_27030001 RAL-237 769 chr3R 27140516 27140547 chr3R 27148126 27148151 412 11 7609 1.5 2.0 1.8 3.9 7635 chr3R 27140516 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148151 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-237 770 chr3R 27152376 27152403 chr3R 27152459 27152489 5 85 0.0 1.0 0.5 3.3 113 chr3R 27152376 intron Men-b + chr3R 27152432 intron Men-b + chr3R 27152489 intron Men-b + chr3R_5_27150001 chr3R_27150001 RAL-237 771 chr3R 27227948 27227973 chr3R 27228032 27228059 16 85 4.5 5.5 5.0 2.7 111 chr3R 27227948 intron CG42813 - chr3R 27228004 intron CG42813 - chr3R 27228059 intron CG42813 - chr3R_16_27225001 chr3R_27225001 RAL-237 772 chr3R 27342812 27342825 chr3R 27351392 27351406 Tirant 6 8578 1.5 4.0 2.8 1.6 8594 chr3R 27342812 intron CG42534 + chr3R 27347109 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-237 773 chr3R 27398573 27398602 chr3R 27398649 27398657 4 70 0.0 0.0 0.0 4.0 84 chr3R 27398573 intron side - chr3R 27398615 intron side - chr3R 27398657 intron side - chr3R_4_27395001 chr3R_27395001 RAL-237 774 chr3R 27619713 27619719 chr3R 27619827 27619833 5 114 2.0 4.0 3.0 1.2 120 chr3R 27619713 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619833 intron Tusp + chr3R_5_27615001 chr3R_27615001 RAL-237 775 chr3R 27619726 27619731 chr3R 27619817 27619846 5 108 0.5 3.5 2.0 1.7 120 chr3R 27619726 intron Tusp + chr3R 27619786 intron Tusp + chr3R 27619846 intron Tusp + chr3R_5_27615001 chr3R_27615001 RAL-237 776 chr3R 27679938 27679950 chr3R 27680061 27680073 5 123 10.5 5.5 8.0 0.6 135 chr3R 27679938 exon CG12883 + chr3R 27680006 3` UTR CG12883 + chr3R 27680073 3` UTR CG12883 + chr3R_5_27680001 chr3R_27680001 RAL-237 777 chr3R 27679953 27679970 chr3R 27680059 27680092 8 119 4.5 5.5 5.0 1.3 139 chr3R 27679953 3` UTR CG12883 + chr3R 27680022 3` UTR CG12883 + chr3R 27680092 3` UTR CG12883 + chr3R_8_27680001 chr3R_27680001 RAL-237 778 chr3R 27705358 27705389 chr3R 27705438 27705469 9 79 3.5 4.5 4.0 1.8 111 chr3R 27705358 exon CG12428 - chr3R 27705414 intron CG12428 - chr3R 27705469 exon CG12428 - chr3R_9_27705001 chr3R_27705001 RAL-237 779 chr3R 27725585 27725595 chr3R 27731027 27731037 I-element 6 5442 2.0 3.0 2.5 1.7 5452 chr3R 27725585 intergenic not near genes chr3R 27728311 intergenic not near genes chr3R 27731037 intergenic not near genes chr3R_6_27725001 chr3R_27725001 RAL-237 780 chr3R 27731204 27731230 chr3R 27731284 27731311 12 78 4.5 5.0 4.8 2.1 107 chr3R 27731204 intergenic not near genes chr3R 27731258 intergenic not near genes chr3R 27731311 intergenic not near genes chr3R_12_27730001 chr3R_27730001 RAL-237 781 chr3R 27747991 27748020 chr3R 27748068 27748098 6 78 1.5 1.0 1.2 2.7 107 chr3R 27747991 3` UTR Ets98B + chr3R 27748044 3` UTR Ets98B + chr3R 27748098 3` UTR Ets98B + chr3R_6_27745001 chr3R_27745001 RAL-237 782 chr3R 27779276 27779283 chr3R 27779352 27779360 10 76 9.5 8.5 9.0 1.0 84 chr3R 27779276 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779360 intron CG34353 - chr3R_10_27775001 chr3R_27775001 RAL-237 783 chr3R 27779285 27779290 chr3R 27779348 27779367 5 73 8.0 7.5 7.8 0.6 82 chr3R 27779285 exon CG34353 - chr3R 27779326 intron CG34353 - chr3R 27779367 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-237 784 chr3R 27856761 27856791 chr3R 27858244 27858274 hopper2 5 1483 2.5 1.0 1.8 1.8 1513 chr3R 27856761 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858274 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-237 785 chr3R 27860856 27860882 chr3R 27861264 27861289 8 408 1.0 1.0 1.0 4.0 433 chr3R 27860856 intron CG34353 - chr3R 27861072 intron CG34353 - chr3R 27861289 intron CG34353 - chr3R_8_27860001 chr3R_27860001 RAL-237 786 chr3R 27862953 27862975 chr3R 27868258 27868280 Transpac 4 5305 0.0 1.5 0.8 2.2 5327 chr3R 27862953 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868280 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-237 787 chr3R 27953364 27953391 chr3R 27953495 27953508 13 130 2.0 8.0 5.0 2.2 144 chr3R 27953364 intron CG4951 - chr3R 27953436 intron CG4951 - chr3R 27953508 exon CG4951 - chr3R_13_27950001 chr3R_27950001 RAL-237 788 chr3R 28068496 28068521 chr3R 28073938 28073962 I-element 8 5441 1.0 3.5 2.2 2.5 5466 chr3R 28068496 intron CG34362 + chr3R 28071229 intron CG34362 + chr3R 28073962 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-237 789 chr3R 28103322 28103345 chr3R 28103415 28103438 4 92 3.0 2.0 2.5 1.1 116 chr3R 28103322 intergenic not near genes chr3R 28103380 intergenic not near genes chr3R 28103438 intergenic not near genes chr3R_4_28100001 chr3R_28100001 RAL-237 790 chr3R 28253351 28253368 chr3R 28255861 28255877 jockey 5 2509 2.5 3.0 2.8 1.3 2526 chr3R 28253351 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255877 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-237 791 chr3R 28282986 28283019 chr3R 28283614 28283647 5 629 0.0 1.5 0.8 2.8 661 chr3R 28282986 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283647 intergenic CG34437 +,CG34436 + chr3R_5_28280001 chr3R_28280001 RAL-237 792 chr3R 28352511 28352545 chr3R 28352851 28352885 4 340 1.5 2.0 1.8 1.4 374 chr3R 28352511 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352885 exon Or98b + chr3R_4_28350001 chr3R_28350001 RAL-237 793 chr3R 28484355 28484375 chr3R 28486272 28486292 13 1918 11.0 25.0 18.0 0.7 1937 chr3R 28484355 intergenic CG1894 + chr3R 28485324 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_13_28485001 chr3R_28485001 RAL-237 794 chr3R 28686727 28686746 chr3R 28686809 28686828 4 82 4.0 1.5 2.8 1.1 101 chr3R 28686727 intron CG9990 + chr3R 28686778 intron CG9990 + chr3R 28686828 intron CG9990 + chr3R_4_28685001 chr3R_28685001 RAL-237 795 chr3R 28792874 28792899 chr3R 28797968 28797994 jockey 4 5092 0.5 3.5 2.0 1.3 5120 chr3R 28792874 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-237 796 chr3R 28811571 28811598 chr3R 28811717 28811744 4 146 2.5 1.0 1.8 1.4 173 chr3R 28811571 intergenic wdn - chr3R 28811658 intergenic wdn -,CG1646 + chr3R 28811744 intergenic CG1646 +,wdn - chr3R_4_28810001 chr3R_28810001 RAL-237 797 chr3R 21907534 21907536 chr3R 28831799 28831802 96 6924266 15.5 20.0 17.8 5.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_96_25365001 chr3R_25365001 RAL-237 798 chr3R 21907534 21907536 chr3R 29013340 29013340 16 7105806 15.5 13.0 14.2 1.1 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_16_25460001 chr3R_25460001 RAL-237 799 chr3R 29032745 29032778 chr3R 29032820 29032854 9 71 0.5 0.5 0.5 6.0 109 chr3R 29032745 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032800 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032854 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_9_29030001 chr3R_29030001 RAL-237 800 chr3R 29237253 29237322 chr3R 29239274 29239342 4 2020 3.0 0.0 1.5 1.6 2089 chr3R 29237253 exon CG11951 - chr3R 29238298 intron CG11951 - chr3R 29239342 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-237 801 chr3R 29256265 29256300 chr3R 29256345 29256380 6 78 0.5 4.5 2.5 1.7 115 chr3R 29256265 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256380 intergenic CG45544 + chr3R_6_29255001 chr3R_29255001 RAL-237 802 chr3R 29319835 29319851 chr3R 29320154 29320158 jockey 5 317 0.5 0.5 0.5 3.3 323 chr3R 29319835 intergenic Cnx99A - chr3R 29319996 intergenic Cnx99A - chr3R 29320158 intergenic not near genes chr3R_5_29315001 chr3R_29315001 RAL-237 803 chr3R 29406633 29406652 chr3R 29407900 29407934 jockey 8 1276 3.0 4.0 3.5 1.8 1301 chr3R 29406633 intron Ptp99A + chr3R 29407284 intron Ptp99A + chr3R 29407934 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-237 804 chr3R 29505897 29505906 chr3R 29505974 29505982 4 77 4.5 1.5 3.0 1.0 85 chr3R 29505897 intergenic not near genes chr3R 29505940 intergenic not near genes chr3R 29505982 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-237 805 chr3R 29539434 29539460 chr3R 29539506 29539534 9 75 0.5 0.0 0.2 7.5 100 chr3R 29539434 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539534 intergenic not near genes chr3R_9_29535001 chr3R_29535001 RAL-237 806 chr3R 29624958 29624991 chr3R 29625034 29625065 9 75 4.0 3.5 3.8 1.9 107 chr3R 29624958 intergenic not near genes chr3R 29625012 intergenic not near genes chr3R 29625065 intergenic not near genes chr3R_9_29625001 chr3R_29625001 RAL-237 807 chr3R 29716994 29717028 chr3R 29717070 29717103 13 76 2.0 2.0 2.0 4.3 109 chr3R 29716994 intergenic Obp99b - chr3R 29717048 intergenic Obp99b - chr3R 29717103 intergenic Obp99b - chr3R_13_29715001 chr3R_29715001 RAL-237 808 chr3R 29719403 29719431 chr3R 29719489 29719517 6 86 1.0 1.0 1.0 3.0 114 chr3R 29719403 intron CG15506 + chr3R 29719460 intron CG15506 + chr3R 29719517 intron CG15506 + chr3R_6_29715001 chr3R_29715001 RAL-237 809 chr3R 29738270 29738294 chr3R 29739736 29739761 hobo 10 1467 2.5 2.5 2.5 2.9 1491 chr3R 29738270 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739761 5` UTR CG1969 + chr3R_10_29735001 chr3R_29735001 RAL-237 810 chr3R 29773875 29773906 chr3R 29773966 29773997 12 89 2.0 0.0 1.0 6.0 122 chr3R 29773875 intron kay + chr3R 29773936 intron kay + chr3R 29773997 intron kay + chr3R_12_29770001 chr3R_29770001 RAL-237 811 chr3R 29854826 29854855 chr3R 29854906 29854935 5 79 3.0 2.5 2.8 1.3 109 chr3R 29854826 3` UTR dgt1 - chr3R 29854880 exon dgt1 - chr3R 29854935 exon dgt1 - chr3R_5_29850001 chr3R_29850001 RAL-237 812 chr3R 29882022 29882052 chr3R 29891179 29891209 roo 8 9156 2.0 0.5 1.2 3.6 9187 chr3R 29882022 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-237 813 chr3R 29950584 29950599 chr3R 29950659 29950660 5 72 5.5 2.0 3.8 1.0 76 chr3R 29950584 intergenic TkR99D - chr3R 29950622 intergenic TkR99D - chr3R 29950660 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-237 814 chr3R 30001734 30001737 chr3R 30001810 30001811 4 75 21.0 5.5 13.2 0.3 77 chr3R 30001734 intron Tace + chr3R 30001772 intron Tace + chr3R 30001811 intron Tace + chr3R_4_30000001 chr3R_30000001 RAL-237 815 chr3R 30001748 30001757 chr3R 30001805 30001833 5 68 8.0 4.5 6.2 0.7 85 chr3R 30001748 intron Tace + chr3R 30001790 intron Tace + chr3R 30001833 intron Tace + chr3R_5_30000001 chr3R_30000001 RAL-237 816 chr3R 30203634 30203651 chr3R 30203710 30203712 7 76 1.5 3.5 2.5 2.0 78 chr3R 30203634 intergenic not near genes chr3R 30203673 intergenic not near genes chr3R 30203712 intergenic not near genes chr3R_7_30200001 chr3R_30200001 RAL-237 817 chr3R 30263897 30263924 chr3R 30263972 30264000 7 75 1.0 1.0 1.0 3.5 103 chr3R 30263897 intergenic not near genes chr3R 30263948 intergenic not near genes chr3R 30264000 intergenic not near genes chr3R_7_30260001 chr3R_30260001 RAL-237 818 chr3R 30396220 30396245 chr3R 30404486 30404508 roo 6 8266 2.0 4.0 3.0 1.5 8288 chr3R 30396220 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404508 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-237 819 chr3R 30480477 30480507 chr3R 30482944 30482975 jockey 9 2464 1.5 2.5 2.0 3.0 2498 chr3R 30480477 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-237 820 chr3R 30498411 30498434 chr3R 30498611 30498634 4 199 0.0 4.0 2.0 1.3 223 chr3R 30498411 intron PH4alphaNE1 - chr3R 30498522 intron PH4alphaNE1 - chr3R 30498634 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-237 821 chr3R 30627611 30627633 chr3R 30627689 30627712 7 79 0.0 1.5 0.8 3.9 101 chr3R 30627611 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627712 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-237 822 chr3R 30634201 30634233 chr3R 30634292 30634323 9 90 1.5 2.0 1.8 3.2 122 chr3R 30634201 intergenic not near genes chr3R 30634262 intergenic not near genes chr3R 30634323 intergenic not near genes chr3R_9_30630001 chr3R_30630001 RAL-237 823 chr3R 30679545 30679550 chr3R 30687013 30687019 blood 4 7468 2.5 6.5 4.5 0.7 7474 chr3R 30679545 intergenic not near genes chr3R 30683282 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-237 824 chr3R 30690164 30690181 chr3R 30690247 30690264 6 83 2.0 0.5 1.2 2.7 100 chr3R 30690164 intergenic Spn100A + chr3R 30690214 intergenic Spn100A + chr3R 30690264 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-237 825 chr3R 30791911 30791945 chr3R 30792019 30792051 22 113 6.0 7.5 6.8 2.8 140 chr3R 30791911 exon wts - chr3R 30791981 intron wts - chr3R 30792051 exon wts - chr3R_22_30790001 chr3R_30790001 RAL-237 826 chr3R 30802680 30802691 chr3R 30802758 30802777 5 84 2.5 3.0 2.8 1.3 97 chr3R 30802680 intron wts - chr3R 30802728 intron wts - chr3R 30802777 intron wts - chr3R_5_30800001 chr3R_30800001 RAL-237 827 chr3R 30818819 30818842 chr3R 30820384 30820407 1360 15 1565 1.5 2.5 2.0 5.0 1588 chr3R 30818819 intron cindr + chr3R 30819613 intron cindr + chr3R 30820407 intron cindr + chr3R_15_30815001 chr3R_30815001 RAL-237 828 chr3R 31042117 31042143 chr3R 31042203 31042230 5 87 3.0 4.0 3.5 1.1 113 chr3R 31042117 intron CanA1 + chr3R 31042174 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-237 829 chr3R 31070847 31070880 chr3R 31070926 31070960 4 80 1.5 0.0 0.8 2.2 113 chr3R 31070847 intron Sox100B + chr3R 31070904 intron Sox100B + chr3R 31070960 intron Sox100B + chr3R_4_31070001 chr3R_31070001 RAL-237 830 chr3R 31323620 31323633 chr3R 31323702 31323715 5 82 2.5 2.0 2.2 1.6 95 chr3R 31323620 intron CG34347 + chr3R 31323668 intron CG34347 + chr3R 31323715 intron CG34347 + chr3R_5_31320001 chr3R_31320001 RAL-237 831 chr3R 31435375 31435573 chr3R 31435527 31435826 5 194 3.0 3.0 3.0 1.2 451 chr3R 31435375 intron Gprk2 + chr3R 31435600 intron Gprk2 + chr3R 31435826 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-237 832 chr3R 31450787 31450793 chr3R 31450953 31450960 4 167 15.5 13.5 14.5 0.3 173 chr3R 31450787 intron Gprk2 + chr3R 31450874 intron Gprk2 + chr3R 31450960 intron Gprk2 + chr3R_4_31450001 chr3R_31450001 RAL-237 833 chr3R 31670603 31670636 chr3R 31670697 31670730 7 94 2.0 2.0 2.0 2.3 127 chr3R 31670603 intron CG1815 + chr3R 31670666 intron CG1815 + chr3R 31670730 intron CG1815 + chr3R_7_31670001 chr3R_31670001 RAL-237 834 chr3R 31691540 31691556 chr3R 31696306 31696322 Doc 6 4766 5.5 5.5 5.5 0.9 4782 chr3R 31691540 intergenic not near genes chr3R 31693931 intergenic not near genes chr3R 31696322 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-237 835 chr3R 31691557 31691563 chr3R 31696298 31696329 Doc 5 4751 4.0 4.0 4.0 1.0 4772 chr3R 31691557 intergenic not near genes chr3R 31693943 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-237 836 chr3R 31808617 31808641 chr3R 31808692 31808717 5 76 1.0 0.5 0.8 2.8 100 chr3R 31808617 intron CG11576 - chr3R 31808667 intron CG11576 - chr3R 31808717 intron CG11576 - chr3R_5_31805001 chr3R_31805001 RAL-237 837 chr3R 31841774 31841808 chr3R 31841878 31841912 7 104 1.5 0.5 1.0 3.5 138 chr3R 31841774 3` UTR RhoGAP100F + chr3R 31841843 3` UTR RhoGAP100F + chr3R 31841912 3` UTR RhoGAP100F + chr3R_7_31840001 chr3R_31840001 RAL-237 838 chr3R 31931193 31931208 chr3R 31931276 31931291 7 83 1.5 2.5 2.0 2.3 98 chr3R 31931193 intron heph - chr3R 31931242 intron heph - chr3R 31931291 intron heph - chr3R_7_31930001 chr3R_31930001 RAL-237 839 chr3R 31997995 31998021 chr3R 32005464 32005491 blood 7 7469 0.5 0.5 0.5 4.7 7496 chr3R 31997995 intron heph - chr3R 32001743 intron heph - chr3R 32005491 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-237 840 chrX 178901 178911 chrX 178984 178994 4 82 0.5 1.0 0.8 2.2 93 chrX 178901 intron tyn + chrX 178948 intron tyn + chrX 178994 intron tyn + chrX_4_175001 chrX_175001 RAL-237 841 chrX 569359 569376 chrX 569473 569491 6 114 0.0 3.5 1.8 2.1 132 chrX 569359 intron Appl + chrX 569425 intron Appl + chrX 569491 intron Appl + chrX_6_565001 chrX_565001 RAL-237 842 chrX 611141 611157 chrX 611231 611247 4 90 3.0 3.0 3.0 1.0 106 chrX 611141 intron CG13366 - chrX 611194 intron CG13366 - chrX 611247 intron CG13366 - chrX_4_610001 chrX_610001 RAL-237 843 chrX 670266 670293 chrX 670346 670364 5 78 0.0 1.0 0.5 3.3 98 chrX 670266 intergenic not near genes chrX 670315 intergenic not near genes chrX 670364 intergenic not near genes chrX_5_670001 chrX_670001 RAL-237 844 chrX 680838 680869 chrX 680921 680952 6 80 2.5 3.5 3.0 1.5 114 chrX 680838 intergenic not near genes chrX 680895 intergenic not near genes chrX 680952 intergenic not near genes chrX_6_680001 chrX_680001 RAL-237 845 chrX 695295 695319 chrX 695367 695395 4 75 2.5 1.0 1.8 1.4 100 chrX 695295 intron sdk + chrX 695345 intron sdk + chrX 695395 intron sdk + chrX_4_695001 chrX_695001 RAL-237 846 chrX 706806 706829 chrX 707169 707193 6 363 0.5 2.0 1.2 2.7 387 chrX 706806 intron sdk + chrX 707000 intron sdk + chrX 707193 intron sdk + chrX_6_705001 chrX_705001 RAL-237 847 chrX 778138 778146 chrX 778222 778233 7 88 3.5 1.0 2.2 2.2 95 chrX 778138 intron fz3 + chrX 778186 intron fz3 + chrX 778233 intron fz3 + chrX_7_775001 chrX_775001 RAL-237 848 chrX 780591 780597 chrX 780667 780673 4 75 3.0 0.0 1.5 1.6 82 chrX 780591 intron fz3 + chrX 780632 intron fz3 + chrX 780673 intron fz3 + chrX_4_780001 chrX_780001 RAL-237 849 chrX 802290 802319 chrX 802367 802391 10 76 3.5 3.0 3.2 2.4 101 chrX 802290 exon CG13359 - chrX 802340 exon CG13359 - chrX 802391 exon CG13359 - chrX_10_800001 chrX_800001 RAL-237 850 chrX 806784 806813 chrX 806878 806909 7 92 4.0 2.0 3.0 1.8 125 chrX 806784 intron Sec22 + chrX 806846 intron Sec22 + chrX 806909 intron Sec22 + chrX_7_805001 chrX_805001 RAL-237 851 chrX 868498 868518 chrX 868574 868588 4 74 3.0 5.5 4.2 0.8 90 chrX 868498 intron CG43867 - chrX 868543 intron CG43867 - chrX 868588 intron CG43867 - chrX_4_865001 chrX_865001 RAL-237 852 chrX 911166 911183 chrX 911243 911249 5 76 1.5 0.0 0.8 2.8 83 chrX 911166 intron CG43867 - chrX 911208 intron CG43867 - chrX 911249 intron CG43867 - chrX_5_910001 chrX_910001 RAL-237 853 chrX 1053117 1053120 chrX 16983076 16983077 11 15929958 8.5 5.0 6.8 1.4 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_11_9015001 chrX_9015001 RAL-237 854 chrX 1163307 1163324 chrX 1163385 1163401 5 78 0.5 0.5 0.5 3.3 94 chrX 1163307 intergenic CG34320 - chrX 1163354 intergenic CG34320 - chrX 1163401 intergenic CG34320 - chrX_5_1160001 chrX_1160001 RAL-237 855 chrX 1253731 1253764 chrX 1253812 1253846 8 81 1.5 1.0 1.2 3.6 115 chrX 1253731 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253846 intron Atf3 - chrX_8_1250001 chrX_1250001 RAL-237 856 chrX 1357779 1357808 chrX 1367949 1367978 Doc 10 10170 1.5 5.0 3.2 2.4 10199 chrX 1357779 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_10_1360001 chrX_1360001 RAL-237 857 chrX 1518039 1518077 chrX 1523441 1523452 jockey 5 5397 0.5 2.5 1.5 2.0 5413 chrX 1518039 intergenic inc + chrX 1520746 intergenic not near genes chrX 1523452 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-237 858 chrX 1554515 1554531 chrX 1554671 1554672 5 151 25.0 20.5 22.8 0.2 157 chrX 1554515 exon Mur2B - chrX 1554594 intron Mur2B - chrX 1554672 exon Mur2B - chrX_5_1550001 chrX_1550001 RAL-237 859 chrX 1554533 1554541 chrX 1554668 1554673 7 139 25.5 21.0 23.2 0.3 140 chrX 1554533 exon Mur2B - chrX 1554603 intron Mur2B - chrX 1554673 exon Mur2B - chrX_7_1550001 chrX_1550001 RAL-237 860 chrX 1627985 1628001 chrX 1635448 1635459 gtwin 7 7466 4.0 5.5 4.8 1.2 7474 chrX 1627985 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635459 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-237 861 chrX 1628002 1628007 chrX 1635443 1635452 gtwin 4 7442 2.0 3.5 2.8 1.1 7450 chrX 1628002 intron,intron Mur2B -,br + chrX 1631727 intron,intron Mur2B -,br + chrX 1635452 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-237 862 chrX 1903354 1903375 chrX 1903435 1903456 10 81 3.5 1.0 2.2 3.1 102 chrX 1903354 5` UTR CR43864 + chrX 1903405 5` UTR CR43864 + chrX 1903456 5` UTR CR43864 + chrX_10_1900001 chrX_1900001 RAL-237 863 chrX 1954885 1954918 chrX 1962824 1962852 Stalker2 11 7938 4.0 0.5 2.2 3.4 7967 chrX 1954885 intron Hr4 + chrX 1958868 intron Hr4 + chrX 1962852 intron Hr4 + chrX_11_1955001 chrX_1955001 RAL-237 864 chrX 2023959 2023985 chrX 2024082 2024108 6 123 6.5 6.5 6.5 0.8 149 chrX 2023959 3` UTR,3` UTR east +,Actn - chrX 2024034 3` UTR,3` UTR east +,Actn - chrX 2024108 3` UTR,3` UTR east +,Actn - chrX_6_2020001 chrX_2020001 RAL-237 865 chrX 2020866 2020894 chrX 2025586 2025615 10 4725 47.5 22.5 35.0 0.3 4749 chrX 2020866 exon east + chrX 2023240 3` UTR east + chrX 2025615 exon Actn - chrX_10_2020001 chrX_2020001 RAL-237 866 chrX 2364256 2364280 chrX 2364631 2364655 6 375 1.0 0.5 0.8 3.3 399 chrX 2364256 intron ptr - chrX 2364456 intron ptr - chrX 2364655 intron ptr - chrX_6_2360001 chrX_2360001 RAL-237 867 chrX 2399839 2399868 chrX 2408192 2408198 roo 6 8349 2.5 0.5 1.5 2.4 8359 chrX 2399839 intergenic not near genes chrX 2404018 intergenic not near genes chrX 2408198 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-237 868 chrX 2578817 2578840 chrX 2578921 2578942 5 104 3.5 1.5 2.5 1.4 125 chrX 2578817 intergenic Pdfr +,Vha36-3 - chrX 2578880 intergenic Vha36-3 -,Pdfr + chrX 2578942 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-237 869 chrX 2635382 2635399 chrX 2635491 2635505 6 107 3.5 4.5 4.0 1.2 123 chrX 2635382 intron sgg + chrX 2635444 intron sgg + chrX 2635505 intron sgg + chrX_6_2635001 chrX_2635001 RAL-237 870 chrX 2803494 2803528 chrX 2803637 2803671 9 143 2.5 2.0 2.2 2.8 177 chrX 2803494 intron kirre + chrX 2803582 intron kirre + chrX 2803671 intron kirre + chrX_9_2800001 chrX_2800001 RAL-237 871 chrX 2888114 2888147 chrX 2888189 2888225 9 76 1.0 2.0 1.5 3.6 111 chrX 2888114 intron kirre + chrX 2888170 intron kirre + chrX 2888225 intron kirre + chrX_9_2885001 chrX_2885001 RAL-237 872 chrX 2917096 2917118 chrX 2917176 2917198 6 80 0.5 0.5 0.5 4.0 102 chrX 2917096 intron kirre + chrX 2917147 intron kirre + chrX 2917198 intron kirre + chrX_6_2915001 chrX_2915001 RAL-237 873 chrX 3415021 3415048 chrX 3421205 3421232 3S18 5 6184 0.0 3.0 1.5 2.0 6211 chrX 3415021 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421232 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-237 874 chrX 3726762 3726775 chrX 3730159 3730172 NOF 4 3397 3.5 1.0 2.2 1.2 3410 chrX 3726762 intron tlk + chrX 3728467 intron tlk + chrX 3730172 intron tlk + chrX_4_3725001 chrX_3725001 RAL-237 875 chrX 3881271 3881304 chrX 3881410 3881443 10 139 1.0 2.0 1.5 4.0 172 chrX 3881271 intron VhaAC39-1 + chrX 3881357 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_10_3880001 chrX_3880001 RAL-237 876 chrX 3986882 3986890 chrX 3994515 3994523 412 4 7633 1.5 2.5 2.0 1.3 7641 chrX 3986882 intergenic not near genes chrX 3990702 intergenic not near genes chrX 3994523 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-237 877 chrX 4029526 4029555 chrX 4029716 4029743 6 189 0.0 0.0 0.0 6.0 217 chrX 4029526 intergenic not near genes chrX 4029634 intergenic not near genes chrX 4029743 intergenic not near genes chrX_6_4025001 chrX_4025001 RAL-237 878 chrX 4132671 4132702 chrX 4132839 4132871 5 169 1.5 0.5 1.0 2.5 200 chrX 4132671 3` UTR GlcAT-I + chrX 4132771 3` UTR GlcAT-I + chrX 4132871 intergenic Fas2 -,GlcAT-I + chrX_5_4130001 chrX_4130001 RAL-237 879 chrX 4186821 4186821 chrX 4617441 4617442 4 430621 6.5 19.0 12.8 0.3 430621 chrX 4186821 intron Fas2 - chrX 4402132 intron CR32773 - chrX 4617442 intergenic peb + chrX_4_4400001 chrX_4400001 RAL-237 880 chrX 4361459 4361472 chrX 4361538 4361550 4 79 0.0 2.5 1.2 1.8 91 chrX 4361459 intron norpA + chrX 4361504 intron norpA + chrX 4361550 intron norpA + chrX_4_4360001 chrX_4360001 RAL-237 881 chrX 4396975 4397010 chrX 4397060 4397085 6 82 2.0 4.0 3.0 1.5 110 chrX 4396975 intron CR32773 - chrX 4397030 intron CR32773 - chrX 4397085 intron CR32773 - chrX_6_4395001 chrX_4395001 RAL-237 882 chrX 4515201 4515211 chrX 4515277 4515280 5 75 0.0 1.0 0.5 3.3 79 chrX 4515201 intron CR32773 - chrX 4515240 intron CR32773 - chrX 4515280 intron CR32773 - chrX_5_4515001 chrX_4515001 RAL-237 883 chrX 4700391 4700425 chrX 4700734 4700765 jockey 5 342 1.5 1.0 1.2 2.3 374 chrX 4700391 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700765 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-237 884 chrX 4723576 4723584 chrX 4723656 4723664 8 79 7.5 6.5 7.0 1.0 88 chrX 4723576 intron Proc-R + chrX 4723620 intron Proc-R + chrX 4723664 intron Proc-R + chrX_8_4720001 chrX_4720001 RAL-237 885 chrX 4731816 4731832 chrX 4736909 4736925 jockey 6 5092 4.0 3.0 3.5 1.3 5109 chrX 4731816 intergenic not near genes chrX 4734370 intergenic not near genes chrX 4736925 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-237 886 chrX 4763250 4763281 chrX 4763738 4763769 Stalker4 4 487 0.5 0.0 0.2 3.3 519 chrX 4763250 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763769 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-237 887 chrX 4965579 4965590 chrX 4965659 4965667 4 79 1.0 3.5 2.2 1.2 88 chrX 4965579 intron CR44833 - chrX 4965623 intron CR44833 - chrX 4965667 intron CR44833 - chrX_4_4965001 chrX_4965001 RAL-237 888 chrX 5096285 5096305 chrX 5103849 5103870 springer 4 7565 1.0 1.5 1.2 1.8 7585 chrX 5096285 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-237 889 chrX 5220397 5220415 chrX 5220638 5220656 4 241 0.0 2.5 1.2 1.8 259 chrX 5220397 intron,intron CG15465 +,rg + chrX 5220526 intron,intron CG15465 +,rg + chrX 5220656 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-237 890 chrX 5338712 5338732 chrX 5339965 5339982 jockey 5 1252 1.5 3.5 2.5 1.4 1270 chrX 5338712 intergenic not near genes chrX 5339347 intergenic not near genes chrX 5339982 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-237 891 chrX 5345404 5345422 chrX 5345515 5345533 4 111 1.0 1.5 1.2 1.8 129 chrX 5345404 intron SK + chrX 5345468 intron SK + chrX 5345533 intron SK + chrX_4_5345001 chrX_5345001 RAL-237 892 chrX 5524839 5524866 chrX 5528702 5528729 412 8 3863 1.5 0.0 0.8 4.4 3890 chrX 5524839 intergenic snoRNA:Psi28S-3342 - chrX 5526784 intergenic not near genes chrX 5528729 intergenic Vsx2 - chrX_8_5525001 chrX_5525001 RAL-237 893 chrX 5566777 5566781 chrX 5566858 5566861 4 81 3.0 3.0 3.0 1.0 84 chrX 5566777 intergenic not near genes chrX 5566819 intergenic not near genes chrX 5566861 intergenic not near genes chrX_4_5565001 chrX_5565001 RAL-237 894 chrX 5634567 5634594 chrX 5634650 5634673 17 81 5.0 1.5 3.2 4.0 106 chrX 5634567 intron CG42492 - chrX 5634620 intron CG42492 - chrX 5634673 intron CG42492 - chrX_17_5630001 chrX_5630001 RAL-237 895 chrX 5884170 5884185 chrX 5884409 5884426 pogo 6 239 3.5 0.0 1.8 2.1 256 chrX 5884170 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884426 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-237 896 chrX 6003281 6003307 chrX 6003362 6003386 12 80 0.0 2.5 1.2 5.5 105 chrX 6003281 intron CR44498 + chrX 6003334 intron CR44498 + chrX 6003386 intron CR44498 + chrX_12_6000001 chrX_6000001 RAL-237 897 chrX 6171581 6171614 chrX 6179014 6179047 Quasimodo 7 7432 1.0 2.0 1.5 2.8 7466 chrX 6171581 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179047 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-237 898 chrX 6344466 6344490 chrX 6344551 6344575 5 85 0.5 1.0 0.8 2.8 109 chrX 6344466 intergenic not near genes chrX 6344520 intergenic not near genes chrX 6344575 intergenic not near genes chrX_5_6340001 chrX_6340001 RAL-237 899 chrX 6392871 6392902 chrX 6397635 6397667 Doc 5 4765 0.5 1.0 0.8 2.8 4796 chrX 6392871 intergenic not near genes chrX 6395269 intergenic not near genes chrX 6397667 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-237 900 chrX 6562822 6562849 chrX 6571303 6571331 Tirant 5 8481 0.5 0.5 0.5 3.3 8509 chrX 6562822 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571331 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-237 901 chrX 6897574 6897701 chrX 6897652 6897811 5 91 0.0 0.0 0.0 5.0 237 chrX 6897574 intergenic not near genes chrX 6897692 intergenic not near genes chrX 6897811 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-237 902 chrX 7069805 7069826 chrX 7069884 7069905 7 79 2.5 0.0 1.2 3.2 100 chrX 7069805 5` UTR CG4607 + chrX 7069855 5` UTR CG4607 + chrX 7069905 5` UTR CG4607 + chrX_7_7065001 chrX_7065001 RAL-237 903 chrX 7702912 7702926 chrX 7703350 7703365 jockey 4 439 6.5 2.5 4.5 0.7 453 chrX 7702912 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-237 904 chrX 7718871 7718899 chrX 7718990 7719018 7 119 3.0 3.0 3.0 1.8 147 chrX 7718871 intergenic not near genes chrX 7718944 intergenic not near genes chrX 7719018 intergenic not near genes chrX_7_7715001 chrX_7715001 RAL-237 905 chrX 7737165 7737183 chrX 7737247 7737265 5 81 1.0 2.0 1.5 2.0 100 chrX 7737165 5` UTR Tom40 + chrX 7737215 intron Tom40 + chrX 7737265 intron Tom40 + chrX_5_7735001 chrX_7735001 RAL-237 906 chrX 7960164 7960165 chrX 9845361 9845361 5 1885197 15.0 14.0 14.5 0.3 1885197 chrX 7960164 intron,5` UTR sws -,CR45620 + chrX 8902762 exon Rbm13 + chrX 9845361 intron CG32698 + chrX_5_8900001 chrX_8900001 RAL-237 907 chrX 8085574 8085600 chrX 8085660 8085686 11 86 2.5 2.0 2.2 3.4 112 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085686 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-237 908 chrX 8396581 8396619 chrX 8396666 8396703 5 84 4.0 1.5 2.8 1.3 122 chrX 8396581 intergenic not near genes chrX 8396642 intergenic not near genes chrX 8396703 intergenic CG15345 - chrX_5_8395001 chrX_8395001 RAL-237 909 chrX 8605311 8605345 chrX 8605388 8605421 16 75 2.5 2.5 2.5 4.6 110 chrX 8605311 exon Caf1-180 - chrX 8605366 exon Caf1-180 - chrX 8605421 exon Caf1-180 - chrX_16_8605001 chrX_8605001 RAL-237 910 chrX 8708691 8708713 chrX 8708874 8708896 9 183 13.5 8.5 11.0 0.8 205 chrX 8708691 intergenic not near genes chrX 8708794 intergenic not near genes chrX 8708896 intergenic not near genes chrX_9_8705001 chrX_8705001 RAL-237 911 chrX 8922328 8922363 chrX 8922762 8922796 jockey 6 432 3.5 3.0 3.2 1.4 468 chrX 8922328 intron rdgA + chrX 8922562 intron rdgA + chrX 8922796 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-237 912 chrX 9152078 9152104 chrX 9152161 9152187 9 82 1.5 1.0 1.2 4.1 109 chrX 9152078 intergenic dalao +,His3.3B - chrX 9152132 intergenic dalao +,His3.3B - chrX 9152187 intergenic dalao +,His3.3B - chrX_9_9150001 chrX_9150001 RAL-237 913 chrX 9377838 9377858 chrX 9377917 9377937 4 79 2.0 1.0 1.5 1.6 99 chrX 9377838 intron mgl - chrX 9377888 intron mgl - chrX 9377937 intron mgl - chrX_4_9375001 chrX_9375001 RAL-237 914 chrX 9508152 9508168 chrX 9509669 9509683 jockey 14 1517 1.0 6.5 3.8 2.9 1531 chrX 9508152 intron CG32700 - chrX 9508918 intron CG32700 - chrX 9509683 intron CG32700 - chrX_14_9505001 chrX_9505001 RAL-237 915 chrX 9575806 9575820 chrX 9576127 9576144 mdg3 5 323 1.5 2.0 1.8 1.8 338 chrX 9575806 intron,exon CG32699 -,CG42395 - chrX 9575975 intron,intron CG32699 -,CG42395 - chrX 9576144 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-237 916 chrX 10167877 10167885 chrX 10168621 10168631 4 745 1.0 1.0 1.0 2.0 754 chrX 10167877 intron,intron CR44894 -,CG43902 + chrX 10168254 intron,intron CR44894 -,CG43902 + chrX 10168631 intron,intron CR44894 -,CG43902 + chrX_4_10165001 chrX_10165001 RAL-237 917 chrX 10216850 10216852 chrX 10216930 10216933 4 80 8.0 11.5 9.8 0.4 83 chrX 10216850 3` UTR l(1)G0230 + chrX 10216892 3` UTR l(1)G0230 + chrX 10216933 3` UTR l(1)G0230 + chrX_4_10215001 chrX_10215001 RAL-237 918 chrX 10513536 10513563 chrX 10513984 10514011 5 448 1.0 3.5 2.2 1.6 475 chrX 10513536 intron spri - chrX 10513774 intron spri - chrX 10514011 intron spri - chrX_5_10510001 chrX_10510001 RAL-237 919 chrX 10772683 10772697 chrX 10772765 10772780 Tirant 4 82 3.0 2.0 2.5 1.1 97 chrX 10772683 intron CG15211 + chrX 10772732 intron CG15211 + chrX 10772780 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-237 920 chrX 11062456 11062476 chrX 11062551 11062571 5 95 1.0 2.5 1.8 1.8 115 chrX 11062456 exon CG1537 - chrX 11062514 intron CG1537 - chrX 11062571 intron CG1537 - chrX_5_11060001 chrX_11060001 RAL-237 921 chrX 11209616 11209647 chrX 11209811 11209842 6 191 1.5 1.0 1.2 2.7 226 chrX 11209616 intergenic not near genes chrX 11209729 intergenic not near genes chrX 11209842 intergenic not near genes chrX_6_11205001 chrX_11205001 RAL-237 922 chrX 11571457 11571481 chrX 11571694 11571718 pogo 5 237 3.0 3.0 3.0 1.2 261 chrX 11571457 3` UTR Kmn1 - chrX 11571588 3` UTR Kmn1 - chrX 11571718 3` UTR Kmn1 - chrX_5_11570001 chrX_11570001 RAL-237 923 chrX 11719869 11719900 chrX 11719949 11719979 5 80 0.0 2.0 1.0 2.5 110 chrX 11719869 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11719979 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-237 924 chrX 11839036 11839066 chrX 11839284 11839313 9 246 0.5 2.0 1.2 4.1 277 chrX 11839036 intergenic not near genes chrX 11839174 intergenic Cyp28c1 + chrX 11839313 intergenic Cyp28c1 + chrX_9_11835001 chrX_11835001 RAL-237 925 chrX 12168137 12168164 chrX 12173578 12173606 I-element 4 5442 1.5 3.0 2.2 1.2 5469 chrX 12168137 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173606 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-237 926 chrX 12421236 12421510 chrX 12421321 12421586 4 80 0.5 2.0 1.2 1.8 350 chrX 12421236 intergenic not near genes chrX 12421411 intergenic not near genes chrX 12421586 intergenic not near genes chrX_4_12420001 chrX_12420001 RAL-237 927 chrX 12859055 12859082 chrX 12859133 12859160 4 78 2.0 1.5 1.8 1.4 105 chrX 12859055 intron Pde9 - chrX 12859108 intron Pde9 - chrX 12859160 intron Pde9 - chrX_4_12855001 chrX_12855001 RAL-237 928 chrX 13095790 13095816 chrX 13095903 13095933 13 116 2.5 3.0 2.8 3.4 143 chrX 13095790 3` UTR CG43313 - chrX 13095862 3` UTR CG43313 - chrX 13095933 3` UTR CG43313 - chrX_13_13095001 chrX_13095001 RAL-237 929 chrX 13161691 13161725 chrX 13161767 13161800 9 76 1.5 2.5 2.0 3.0 109 chrX 13161691 3` UTR CG12096 + chrX 13161746 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161800 3` UTR,3` UTR CG12096 +,CG34411 - chrX_9_13160001 chrX_13160001 RAL-237 930 chrX 13553129 13553159 chrX 13553463 13553489 7 333 2.5 1.5 2.0 2.3 360 chrX 13553129 exon CG11816 - chrX 13553309 intron CG11816 - chrX 13553489 exon CG11816 - chrX_7_13550001 chrX_13550001 RAL-237 931 chrX 13555622 13555640 chrX 13555711 13555729 6 90 1.5 1.0 1.2 2.7 107 chrX 13555622 5` UTR CG11816 - chrX 13555676 5` UTR CG11816 - chrX 13555729 5` UTR CG11816 - chrX_6_13555001 chrX_13555001 RAL-237 932 chrX 13937981 13937996 chrX 13941252 13941266 I-element 4 3271 6.5 1.0 3.8 0.8 3285 chrX 13937981 intron mamo - chrX 13939624 intron mamo - chrX 13941266 intron mamo - chrX_4_13935001 chrX_13935001 RAL-237 933 chrX 14105030 14105056 chrX 14114180 14114205 roo 4 9150 2.5 3.5 3.0 1.0 9175 chrX 14105030 intergenic not near genes chrX 14109618 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-237 934 chrX 14185095 14185110 chrX 14185172 14185185 5 75 12.5 16.5 14.5 0.3 90 chrX 14185095 exon CG32603 + chrX 14185140 exon CG32603 + chrX 14185185 exon CG32603 + chrX_5_14185001 chrX_14185001 RAL-237 935 chrX 14185117 14185253 chrX 14185164 14185305 7 57 14.0 12.0 13.0 0.5 188 chrX 14185117 exon CG32603 + chrX 14185211 exon CG32603 + chrX 14185305 exon CG32603 + chrX_7_14185001 chrX_14185001 RAL-237 936 chrX 14209469 14209482 chrX 14209559 14209573 4 91 2.0 2.5 2.2 1.2 104 chrX 14209469 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209521 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209573 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-237 937 chrX 14312779 14312802 chrX 14312860 14312883 5 81 1.0 2.0 1.5 2.0 104 chrX 14312779 intergenic not near genes chrX 14312831 intergenic not near genes chrX 14312883 intergenic not near genes chrX_5_14310001 chrX_14310001 RAL-237 938 chrX 14331759 14331788 chrX 14332093 14332111 8 330 0.5 2.5 1.5 3.2 352 chrX 14331759 intron dpr8 + chrX 14331935 intron dpr8 + chrX 14332111 intron dpr8 + chrX_8_14330001 chrX_14330001 RAL-237 939 chrX 14333294 14333316 chrX 14333376 14333396 4 78 1.5 5.0 3.2 1.0 102 chrX 14333294 intron dpr8 + chrX 14333345 intron dpr8 + chrX 14333396 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-237 940 chrX 14936861 14936890 chrX 14946117 14946146 roo 5 9254 1.5 0.5 1.0 2.5 9285 chrX 14936861 intron pdgy - chrX 14941504 intron pdgy - chrX 14946146 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-237 941 chrX 15413054 15413086 chrX 15417356 15417387 Juan 7 4299 2.0 1.0 1.5 2.8 4333 chrX 15413054 intron Cngl - chrX 15415220 intron Cngl - chrX 15417387 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-237 942 chrX 15678037 15678068 chrX 15678113 15678143 10 76 3.0 3.0 3.0 2.5 106 chrX 15678037 intergenic CG12708 + chrX 15678090 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_10_15675001 chrX_15675001 RAL-237 943 chrX 15681403 15681411 chrX 15681485 15681493 4 81 2.0 1.5 1.8 1.4 90 chrX 15681403 intergenic not near genes chrX 15681448 intergenic not near genes chrX 15681493 intergenic not near genes chrX_4_15680001 chrX_15680001 RAL-237 944 chrX 16329444 16329448 chrX 16329505 16329530 5 78 0.5 6.0 3.2 1.2 86 chrX 16329444 intron CG9919 - chrX 16329487 intron CG9919 - chrX 16329530 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-237 945 chrX 16623482 16623496 chrX 16623567 16623581 4 86 2.5 0.0 1.2 1.8 99 chrX 16623482 intergenic not near genes chrX 16623532 intergenic Rok - chrX 16623581 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-237 946 chrX 16936001 16936035 chrX 16936418 16936453 jockey 9 417 2.5 4.5 3.5 2.0 452 chrX 16936001 intron CG4928 + chrX 16936227 intron CG4928 + chrX 16936453 intron CG4928 + chrX_9_16935001 chrX_16935001 RAL-237 947 chrX 1053118 1053120 chrX 16983076 16983076 5 15929957 8.5 5.0 6.8 0.6 15929958 chrX 1053118 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-237 948 chrX 16983076 16983076 chrX 19404963 19404965 6 2421887 4.0 5.0 4.5 1.1 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_6_18190001 chrX_18190001 RAL-237 949 chrX 17195211 17195226 chrX 17200297 17200312 flea 4 5086 3.0 3.0 3.0 1.0 5101 chrX 17195211 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200312 3` UTR baz + chrX_4_17195001 chrX_17195001 RAL-237 950 chrX 17230489 17230494 chrX 17230568 17230595 5 91 10.0 10.0 10.0 0.5 106 chrX 17230489 exon CG10597 - chrX 17230542 exon CG10597 - chrX 17230595 exon CG10597 - chrX_5_17230001 chrX_17230001 RAL-237 951 chrX 17316372 17316395 chrX 17316456 17316479 4 84 1.0 0.0 0.5 2.7 107 chrX 17316372 intron B-H2 + chrX 17316426 intron B-H2 + chrX 17316479 intron B-H2 + chrX_4_17315001 chrX_17315001 RAL-237 952 chrX 17406671 17406684 chrX 17406945 17406949 7 282 0.5 0.5 0.5 4.7 278 chrX 17406671 intergenic not near genes chrX 17406810 intergenic not near genes chrX 17406949 intergenic not near genes chrX_7_17405001 chrX_17405001 RAL-237 953 chrX 17502352 17502370 chrX 17502431 17502439 5 77 2.0 0.5 1.2 2.3 87 chrX 17502352 intron CG43658 - chrX 17502396 intron CG43658 - chrX 17502439 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-237 954 chrX 17542042 17542074 chrX 17542121 17542149 4 78 1.0 0.0 0.5 2.7 107 chrX 17542042 intron CG43658 - chrX 17542096 intron CG43658 - chrX 17542149 intron CG43658 - chrX_4_17540001 chrX_17540001 RAL-237 955 chrX 17556956 17556975 chrX 17557440 17557457 mdg1 4 488 2.5 6.0 4.2 0.8 501 chrX 17556956 intron CG43658 - chrX 17557206 intron CG43658 - chrX 17557457 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-237 956 chrX 17708849 17708855 chrX 17708928 17708934 4 79 0.0 4.0 2.0 1.3 85 chrX 17708849 intron CG8173 - chrX 17708892 intron CG8173 - chrX 17708934 intron CG8173 - chrX_4_17705001 chrX_17705001 RAL-237 957 chrX 17881481 17881502 chrX 17881680 17881701 6 198 2.5 0.0 1.2 2.7 220 chrX 17881481 intron mnb - chrX 17881591 intron mnb - chrX 17881701 intron mnb - chrX_6_17880001 chrX_17880001 RAL-237 958 chrX 18093658 18093692 chrX 18093865 18093897 10 206 2.0 4.0 3.0 2.5 239 chrX 18093658 5` UTR RhoGAP16F + chrX 18093778 5` UTR RhoGAP16F + chrX 18093897 5` UTR RhoGAP16F + chrX_10_18090001 chrX_18090001 RAL-237 959 chrX 18122824 18122837 chrX 18122900 18122911 5 75 2.5 1.0 1.8 1.8 87 chrX 18122824 5` UTR CR45606 + chrX 18122868 5` UTR CR45606 + chrX 18122911 5` UTR CR45606 + chrX_5_18120001 chrX_18120001 RAL-237 960 chrX 18427389 18427409 chrX 18427800 18427820 4 411 1.0 1.0 1.0 2.0 431 chrX 18427389 intergenic CG42323 + chrX 18427604 intergenic not near genes chrX 18427820 intergenic not near genes chrX_4_18425001 chrX_18425001 RAL-237 961 chrX 18429493 18429526 chrX 18434804 18434837 Transpac 7 5310 1.0 2.5 1.8 2.5 5344 chrX 18429493 intergenic not near genes chrX 18432165 intergenic not near genes chrX 18434837 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-237 962 chrX 18490043 18490055 chrX 18490198 18490208 5 153 4.5 3.5 4.0 1.0 165 chrX 18490043 intergenic CG15046 - chrX 18490126 intergenic not near genes chrX 18490208 intergenic not near genes chrX_5_18490001 chrX_18490001 RAL-237 963 chrX 18912217 18912253 chrX 18912701 18912737 6 484 1.5 1.5 1.5 2.4 520 chrX 18912217 intergenic CR44708 +,CG7378 + chrX 18912477 5` UTR CR44708 + chrX 18912737 5` UTR CR44708 + chrX_6_18910001 chrX_18910001 RAL-237 964 chrX 19020602 19020619 chrX 19020672 19020697 6 76 0.0 2.5 1.2 2.7 95 chrX 19020602 intron CG43759 + chrX 19020650 intron CG43759 + chrX 19020697 intron CG43759 + chrX_6_19020001 chrX_19020001 RAL-237 965 chrX 19125698 19125719 chrX 19125827 19125848 5 129 1.5 1.5 1.5 2.0 150 chrX 19125698 intron tgy - chrX 19125773 intron tgy - chrX 19125848 intron tgy - chrX_5_19125001 chrX_19125001 RAL-237 966 chrX 13057298 13057300 chrX 19242812 19242814 12 6185514 1.0 3.0 2.0 4.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_12_16150001 chrX_16150001 RAL-237 967 chrX 19290379 19290409 chrX 19290470 19290500 5 89 4.5 1.0 2.8 1.3 121 chrX 19290379 intron CG8034 - chrX 19290440 intron CG8034 - chrX 19290500 intron CG8034 - chrX_5_19290001 chrX_19290001 RAL-237 968 chrX 19472140 19472155 chrX 19472707 19472708 jockey 6 566 1.5 3.5 2.5 1.7 568 chrX 19472140 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472708 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-237 969 chrX 19576559 19576592 chrX 19576635 19576670 12 78 2.0 4.0 3.0 3.0 111 chrX 19576559 intron Tao - chrX 19576614 intron Tao - chrX 19576670 intron Tao - chrX_12_19575001 chrX_19575001 RAL-237 970 chrX 19593950 19593975 chrX 19594035 19594060 5 85 1.5 1.0 1.2 2.3 110 chrX 19593950 exon CG14205 + chrX 19594005 intron CG14205 + chrX 19594060 intron CG14205 + chrX_5_19590001 chrX_19590001 RAL-237 971 chrX 19609934 19609962 chrX 19610124 19610151 8 189 2.0 4.0 3.0 2.0 217 chrX 19609934 intron CG14207 + chrX 19610042 intron CG14207 + chrX 19610151 intron CG14207 + chrX_8_19610001 chrX_19610001 RAL-237 972 chrX 19662035 19662057 chrX 19662258 19662279 9 222 2.0 3.5 2.8 2.4 244 chrX 19662035 intron CG14223 - chrX 19662157 intron CG14223 - chrX 19662279 intron CG14223 - chrX_9_19660001 chrX_19660001 RAL-237 973 chrX 19687367 19687392 chrX 19690259 19690282 10 2892 31.5 28.5 30.0 0.3 2915 chrX 19687367 3` UTR Ubqn + chrX 19688824 exon CG14227 - chrX 19690282 3` UTR Mer - chrX_10_19685001 chrX_19685001 RAL-237 974 chrX 19687365 19687402 chrX 19690285 19690291 5 2898 34.0 32.0 33.0 0.1 2926 chrX 19687365 3` UTR Ubqn + chrX 19688828 exon CG14227 - chrX 19690291 3` UTR Mer - chrX_5_19685001 chrX_19685001 RAL-237 975 chrX 20144843 20144867 chrX 20145013 20145036 6 167 2.0 0.5 1.2 2.7 193 chrX 20144843 intergenic not near genes chrX 20144940 intergenic not near genes chrX 20145036 intergenic not near genes chrX_6_20140001 chrX_20140001 RAL-237 976 chrX 20271502 20271522 chrX 20271594 20271614 4 92 2.0 0.0 1.0 2.0 112 chrX 20271502 intergenic not near genes chrX 20271558 intergenic not near genes chrX 20271614 intergenic not near genes chrX_4_20270001 chrX_20270001 RAL-237 977 chrX 20377326 20377351 chrX 20378793 20378818 hobo 13 1465 3.5 9.5 6.5 1.7 1492 chrX 20377326 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378818 intergenic not near genes chrX_13_20375001 chrX_20375001 RAL-237 978 chrX 20443180 20443187 chrX 20443255 20443263 4 76 5.0 1.5 3.2 1.0 83 chrX 20443180 intron CG1695 + chrX 20443222 intron CG1695 + chrX 20443263 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-237 979 chrX 20710410 20710441 chrX 20710487 20710518 4 77 0.0 1.0 0.5 2.7 108 chrX 20710410 intergenic not near genes chrX 20710464 intergenic not near genes chrX 20710518 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-237 980 chrX 20741586 20741611 chrX 20741662 20741687 5 76 1.0 0.0 0.5 3.3 101 chrX 20741586 intergenic not near genes chrX 20741636 intergenic not near genes chrX 20741687 intergenic not near genes chrX_5_20740001 chrX_20740001 RAL-237 981 chrX 20940720 20940751 chrX 20942189 20942220 hobo 6 1468 1.5 3.0 2.2 1.9 1500 chrX 20940720 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942220 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-237 982 chrX 21253282 21253308 chrX 21253359 21253383 9 76 3.0 3.0 3.0 2.2 101 chrX 21253282 intron CG32521 - chrX 21253332 intron CG32521 - chrX 21253383 intron CG32521 - chrX_9_21250001 chrX_21250001 RAL-237 983 chrX 21398889 21398908 chrX 21398964 21398985 4 76 1.0 2.0 1.5 1.6 96 chrX 21398889 intergenic not near genes chrX 21398937 intergenic not near genes chrX 21398985 intergenic not near genes chrX_4_21395001 chrX_21395001 RAL-237 984 chrX 21458694 21458727 chrX 21464130 21464162 Ivk 6 5436 2.0 2.0 2.0 2.0 5468 chrX 21458694 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464162 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-237 985 chrX 21467019 21467042 chrX 21467101 21467126 5 84 1.5 1.5 1.5 2.0 107 chrX 21467019 intergenic CR45507 - chrX 21467072 intergenic CR45507 - chrX 21467126 intergenic CR45507 - chrX_5_21465001 chrX_21465001 RAL-237 986 chrX 21565413 21565445 chrX 21565491 21565523 5 77 0.0 0.5 0.2 4.2 110 chrX 21565413 intergenic not near genes chrX 21565468 intergenic not near genes chrX 21565523 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-237 987 chrX 22259782 22259787 chrX 22382681 22382686 4 122899 65.5 11.0 38.2 0.1 122904 chrX 22259782 intergenic not near genes chrX 22321234 intergenic not near genes chrX 22382686 intergenic not near genes chrX_4_22320001 chrX_22320001 RAL-237 988 chrX 22996316 22996339 chrX 23003550 23003572 roo 5 7234 3.0 3.0 3.0 1.2 7256 chrX 22996316 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 RAL-237 989 chrY 975794 975818 chrY 975874 975960 4 92 44.0 49.5 46.8 0.1 166 chrY 975794 intergenic not near genes chrY 975877 intergenic not near genes chrY 975960 intergenic not near genes chrY_4_975001 chrY_975001 RAL-237