SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47449	47475	chr2L	52574	52600	jockey	8	5125	7.5	8.0	7.8	0.9	5151	chr2L	47449	intron	Cda5 -	chr2L	50024	intron	Cda5 -	chr2L	52600	intron	Cda5 -	chr2L_8_50001	chr2L_50001	RAL-235
2	chr2L	47477	47490	chr2L	52567	52604	jockey	6	5110	4.5	6.0	5.2	1.0	5127	chr2L	47477	intron	Cda5 -	chr2L	50040	intron	Cda5 -	chr2L	52604	intron	Cda5 -	chr2L_6_50001	chr2L_50001	RAL-235
4	chr2L	347867	347919	chr2L	355384	355393	blood	17	7508	4.5	3.5	4.0	3.4	7526	chr2L	347867	3` UTR	Plc21C +	chr2L	351630	intron	Plc21C +	chr2L	355393	3` UTR	Plc21C +	chr2L_17_350001	chr2L_350001	RAL-235
10	chr2L	686922	686946	chr2L	695957	695968	roo	10	9049	1.5	4.5	3.0	2.5	9046	chr2L	686922	intron	ds -	chr2L	691445	intron	ds -	chr2L	695968	intron	ds -	chr2L_10_690001	chr2L_690001	RAL-235
12	chr2L	770451	770483	chr2L	772245	772276	Bari1	11	1792	1.5	3.5	2.5	3.1	1825	chr2L	770451	intergenic	not near genes	chr2L	771364	intergenic	not near genes	chr2L	772276	intergenic	CR44614 +	chr2L_11_770001	chr2L_770001	RAL-235
16	chr2L	976864	976913	chr2L	984515	984546	roo	11	7650	6.0	5.5	5.8	1.6	7682	chr2L	976864	intergenic	not near genes	chr2L	980705	intergenic	not near genes	chr2L	984546	intergenic	not near genes	chr2L_11_980001	chr2L_980001	RAL-235
23	chr2L	1220115	1220160	chr2L	1227601	1227646	blood	8	7481	4.0	7.5	5.8	1.2	7531	chr2L	1220115	intron	CG42329 +	chr2L	1223880	intron	CG42329 +	chr2L	1227646	intron	CG42329 +	chr2L_8_1220001	chr2L_1220001	RAL-235
26	chr2L	1570673	1570699	chr2L	1573565	1573583	F-element	4	2888	7.5	2.0	4.8	0.7	2910	chr2L	1570673	intron	haf +	chr2L	1572128	intron	haf +	chr2L	1573583	intron	haf +	chr2L_4_1570001	chr2L_1570001	RAL-235
32	chr2L	1678962	1678997	chr2L	1686441	1686477	blood	9	7483	3.5	9.0	6.2	1.2	7515	chr2L	1678962	intron	chinmo +	chr2L	1682720	intron	chinmo +	chr2L	1686477	intron	chinmo +	chr2L_9_1680001	chr2L_1680001	RAL-235
33	chr2L	1711346	1711381	chr2L	1711680	1711722	mdg3	5	335	3.0	2.5	2.8	1.3	376	chr2L	1711346	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711534	3` UTR	frtz -	chr2L	1711722	3` UTR	frtz -	chr2L_5_1710001	chr2L_1710001	RAL-235
41	chr2L	2100386	2100402	chr2L	2109531	2109552	roo	4	9154	9.0	2.0	5.5	0.6	9166	chr2L	2100386	intron	dpr3 -	chr2L	2104969	intron	dpr3 -	chr2L	2109552	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-235
55	chr2L	2772605	2772613	chr2L	2779198	2779215	297	4	6596	4.5	8.5	6.5	0.5	6610	chr2L	2772605	3` UTR	Syt1 -	chr2L	2775910	intron	Syt1 -	chr2L	2779215	3` UTR	Syt1 -	chr2L_4_2775001	chr2L_2775001	RAL-235
63	chr2L	2933296	2933332	chr2L	2935493	2935529	pogo	8	2195	5.5	6.0	5.8	1.2	2233	chr2L	2933296	intron	lilli +	chr2L	2934412	intron	lilli +	chr2L	2935529	intron	lilli +	chr2L_8_2930001	chr2L_2930001	RAL-235
65	chr2L	3073012	3073036	chr2L	3078235	3078259	copia	11	5222	8.0	4.5	6.2	1.5	5247	chr2L	3073012	intron	toc -	chr2L	3075636	intron	toc -	chr2L	3078259	intron	toc -	chr2L_11_3075001	chr2L_3075001	RAL-235
66	chr2L	3073044	3073065	chr2L	3078232	3078240	copia	7	5205	2.0	4.5	3.2	1.7	5196	chr2L	3073044	intron	toc -	chr2L	3075642	intron	toc -	chr2L	3078240	intron	toc -	chr2L_7_3075001	chr2L_3075001	RAL-235
72	chr2L	3202718	3202767	chr2L	3210167	3210216	mdg1	19	7448	4.0	0.5	2.2	5.9	7498	chr2L	3202718	intergenic	not near genes	chr2L	3206467	intergenic	not near genes	chr2L	3210216	intergenic	CR45336 +	chr2L_19_3205001	chr2L_3205001	RAL-235
73	chr2L	3251475	3251525	chr2L	3259060	3259109	springer	16	7583	2.0	5.5	3.8	3.3	7634	chr2L	3251475	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259109	intergenic	not near genes	chr2L_16_3255001	chr2L_3255001	RAL-235
76	chr2L	3388586	3388625	chr2L	3388843	3388881	pogo	14	254	2.5	4.0	3.2	3.3	295	chr2L	3388586	intergenic	CG42460 -	chr2L	3388734	intergenic	CG42460 -	chr2L	3388881	intergenic	CG42460 -,CR44791 +	chr2L_14_3385001	chr2L_3385001	RAL-235
95	chr2L	4601704	4601734	chr2L	4609150	4609194	mdg1	16	7458	2.0	3.5	2.8	4.2	7490	chr2L	4601704	intron	dp -	chr2L	4605449	intron	dp -	chr2L	4609194	intron	dp -	chr2L_16_4605001	chr2L_4605001	RAL-235
96	chr2L	4661825	4661858	chr2L	4669425	4669431	opus	9	7597	1.5	7.5	4.5	1.6	7606	chr2L	4661825	intergenic	not near genes	chr2L	4665628	intergenic	not near genes	chr2L	4669431	intergenic	not near genes	chr2L_9_4665001	chr2L_4665001	RAL-235
105	chr2L	4918151	4918198	chr2L	4923244	4923257	jockey	15	5090	5.5	7.0	6.2	2.1	5106	chr2L	4918151	intron	hoe1 -	chr2L	4920704	intron	hoe1 -	chr2L	4923257	intron	hoe1 -	chr2L_15_4920001	chr2L_4920001	RAL-235
110	chr2L	5342752	5342772	chr2L	5345152	5345172	Doc	7	2400	6.0	7.5	6.8	0.9	2420	chr2L	5342752	intergenic	not near genes	chr2L	5343962	intergenic	not near genes	chr2L	5345172	intergenic	not near genes	chr2L_7_5340001	chr2L_5340001	RAL-235
131	chr2L	6363129	6363179	chr2L	6366071	6366100	Burdock	17	2933	3.5	2.0	2.8	4.5	2971	chr2L	6363129	intergenic	not near genes	chr2L	6364614	intergenic	not near genes	chr2L	6366100	intergenic	not near genes	chr2L_17_6360001	chr2L_6360001	RAL-235
132	chr2L	6426841	6426885	chr2L	6445119	6445165	roo	20	18277	4.0	3.5	3.8	4.2	18324	chr2L	6426841	3` UTR	CG9527 -	chr2L	6436003	intron	CG9527 -	chr2L	6445165	exon	CG9527 -	chr2L_20_6435001	chr2L_6435001	RAL-235
140	chr2L	6876756	6876809	chr2L	6882967	6883006	diver	5	6188	3.5	5.5	4.5	0.9	6250	chr2L	6876756	intron	Nlg2 +	chr2L	6879881	intron	Nlg2 +	chr2L	6883006	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-235
165	chr2L	7959030	7959059	chr2L	7960453	7960490	pogo	13	1425	4.5	5.5	5.0	2.2	1460	chr2L	7959030	intron	Snoo -	chr2L	7959760	intron	Snoo -	chr2L	7960490	intron	Snoo -	chr2L_13_7955001	chr2L_7955001	RAL-235
168	chr2L	8013602	8013623	chr2L	8018820	8018836	copia	8	5218	7.5	0.0	3.8	1.7	5234	chr2L	8013602	intron	Tg +	chr2L	8016219	intron	Tg +	chr2L	8018836	intron	Tg +	chr2L_8_8015001	chr2L_8015001	RAL-235
169	chr2L	8018815	8018826	chr2L	8023619	8023630	Doc	7	4803	0.0	8.0	4.0	1.4	4815	chr2L	8018815	intron	Tg +	chr2L	8021222	intron	Tg +	chr2L	8023630	intron	Tg +	chr2L_7_8020001	chr2L_8020001	RAL-235
177	chr2L	8452404	8452450	chr2L	8461595	8461641	roo	16	9188	7.0	6.0	6.5	2.1	9237	chr2L	8452404	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461641	intron	fu12 -	chr2L_16_8455001	chr2L_8455001	RAL-235
179	chr2L	8594446	8594495	chr2L	8601520	8601569	297	10	7072	4.0	2.0	3.0	2.5	7123	chr2L	8594446	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601569	intron	Sema-1a +	chr2L_10_8595001	chr2L_8595001	RAL-235
181	chr2L	8723099	8723143	chr2L	8731496	8731540	Tirant	15	8394	2.0	3.0	2.5	4.3	8441	chr2L	8723099	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731540	intron	raw -	chr2L_15_8725001	chr2L_8725001	RAL-235
187	chr2L	9000259	9000309	chr2L	9007789	9007839	roo	16	7527	7.0	2.0	4.5	2.9	7580	chr2L	9000259	intergenic	Try29F +	chr2L	9004049	intergenic	not near genes	chr2L	9007839	intergenic	not near genes	chr2L_16_9000001	chr2L_9000001	RAL-235
197	chr2L	9217957	9218003	chr2L	9222764	9222785	Doc	16	4799	4.5	9.0	6.8	2.1	4828	chr2L	9217957	intron	tai +	chr2L	9220371	intron	tai +	chr2L	9222785	intron	tai +	chr2L_16_9220001	chr2L_9220001	RAL-235
209	chr2L	9973714	9973759	chr2L	9980846	9980897	HMS-Beagle	12	7131	3.5	3.0	3.2	2.9	7183	chr2L	9973714	intergenic	not near genes	chr2L	9977306	intergenic	not near genes	chr2L	9980897	intergenic	not near genes	chr2L_12_9975001	chr2L_9975001	RAL-235
213	chr2L	10156300	10156339	chr2L	10163790	10163824	blood	7	7478	8.0	1.5	4.8	1.2	7524	chr2L	10156300	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160062	intron	CG44153 -	chr2L	10163824	intron	CG44153 -	chr2L_7_10160001	chr2L_10160001	RAL-235
230	chr2L	10592825	10592874	chr2L	10600506	10600546	opus	15	7675	2.0	6.0	4.0	3.0	7721	chr2L	10592825	intron	Trim9 +	chr2L	10596686	intron	Trim9 +	chr2L	10600546	intron	Trim9 +	chr2L_15_10595001	chr2L_10595001	RAL-235
240	chr2L	10862858	10862868	chr2L	10864464	10864481	Rt1c	4	1620	1.5	4.5	3.0	1.0	1623	chr2L	10862858	3` UTR	CR43807 -	chr2L	10863670	intron	CR43807 -	chr2L	10864481	3` UTR	CR43807 -	chr2L_4_10860001	chr2L_10860001	RAL-235
244	chr2L	10946943	10946970	chr2L	10956168	10956204	roo	8	9226	2.0	6.5	4.2	1.5	9261	chr2L	10946943	intron	dpr2 -	chr2L	10951574	intron	dpr2 -	chr2L	10956204	intron	dpr2 -	chr2L_8_10950001	chr2L_10950001	RAL-235
261	chr2L	11540560	11540568	chr2L	11547985	11547985	Tabor	4	7423	12.5	9.5	11.0	0.3	7425	chr2L	11540560	intergenic	not near genes	chr2L	11544272	intergenic	not near genes	chr2L	11547985	intergenic	not near genes	chr2L_4_11540001	chr2L_11540001	RAL-235
262	chr2L	11540569	11540615	chr2L	11547983	11548027	Tabor	6	7418	8.0	9.0	8.5	0.6	7458	chr2L	11540569	intergenic	not near genes	chr2L	11544298	intergenic	not near genes	chr2L	11548027	intergenic	not near genes	chr2L_6_11540001	chr2L_11540001	RAL-235
263	chr2L	11563623	11563664	chr2L	11568847	11568888	copia	8	5222	3.0	4.5	3.8	1.7	5265	chr2L	11563623	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568888	intergenic	not near genes	chr2L_8_11565001	chr2L_11565001	RAL-235
269	chr2L	11713497	11713531	chr2L	11720976	11721017	blood	5	7478	4.5	3.5	4.0	1.0	7520	chr2L	11713497	intergenic	not near genes	chr2L	11717257	intergenic	not near genes	chr2L	11721017	intergenic	CR44143 +	chr2L_5_11715001	chr2L_11715001	RAL-235
280	chr2L	12067312	12067335	chr2L	12074384	12074407	297	7	7070	9.0	3.0	6.0	1.0	7095	chr2L	12067312	intergenic	not near genes	chr2L	12070860	intergenic	not near genes	chr2L	12074407	intergenic	not near genes	chr2L_7_12070001	chr2L_12070001	RAL-235
295	chr2L	12558303	12558346	chr2L	12565452	12565495	HMS-Beagle	5	7147	4.0	2.5	3.2	1.2	7192	chr2L	12558303	intergenic	not near genes	chr2L	12561899	intergenic	not near genes	chr2L	12565495	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	RAL-235
299	chr2L	12731038	12731087	chr2L	12735825	12735871	F-element	11	4785	4.5	3.0	3.8	2.3	4833	chr2L	12731038	intron	MRP +	chr2L	12733454	intron	MRP +	chr2L	12735871	intron	MRP +	chr2L_11_12730001	chr2L_12730001	RAL-235
300	chr2L	12739162	12739195	chr2L	12743963	12743980	Doc	4	4797	3.0	1.5	2.2	1.2	4818	chr2L	12739162	exon	MRP +	chr2L	12741571	intron	MRP +	chr2L	12743980	exon	MRP +	chr2L_4_12740001	chr2L_12740001	RAL-235
303	chr2L	12763812	12763871	chr2L	12764042	12764054	BS	8	214	0.0	0.0	0.0	8.0	242	chr2L	12763812	intergenic	not near genes	chr2L	12763933	intergenic	not near genes	chr2L	12764054	intergenic	not near genes	chr2L_8_12760001	chr2L_12760001	RAL-235
305	chr2L	12781787	12781812	chr2L	12789250	12789270	Quasimodo	5	7462	5.0	7.5	6.2	0.7	7483	chr2L	12781787	intergenic	not near genes	chr2L	12785528	intergenic	not near genes	chr2L	12789270	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-235
306	chr2L	12791596	12791618	chr2L	12795280	12795313	F-element	4	3690	5.5	6.0	5.8	0.6	3717	chr2L	12791596	intergenic	not near genes	chr2L	12793454	intergenic	not near genes	chr2L	12795313	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-235
307	chr2L	12791619	12791632	chr2L	12795279	12795326	F-element	11	3675	3.5	5.5	4.5	2.0	3707	chr2L	12791619	intergenic	not near genes	chr2L	12793472	intergenic	not near genes	chr2L	12795326	intergenic	not near genes	chr2L_11_12790001	chr2L_12790001	RAL-235
309	chr2L	12894018	12894051	chr2L	12895488	12895501	hobo	4	1460	4.5	6.0	5.2	0.6	1483	chr2L	12894018	intergenic	not near genes	chr2L	12894760	intergenic	not near genes	chr2L	12895501	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	RAL-235
311	chr2L	12933830	12933868	chr2L	12941317	12941331	blood	13	7477	6.0	1.5	3.8	2.7	7501	chr2L	12933830	intergenic	not near genes	chr2L	12937580	intergenic	not near genes	chr2L	12941331	intergenic	not near genes	chr2L_13_12935001	chr2L_12935001	RAL-235
312	chr2L	12933871	12933874	chr2L	12941315	12941315	blood	4	7465	3.5	1.0	2.2	1.2	7444	chr2L	12933871	intergenic	not near genes	chr2L	12937593	intergenic	not near genes	chr2L	12941315	intergenic	not near genes	chr2L_4_12935001	chr2L_12935001	RAL-235
316	chr2L	13036224	13036271	chr2L	13036486	13036527	X-element	19	257	7.0	10.0	8.5	2.0	303	chr2L	13036224	intron	CG9932 -	chr2L	13036376	intron	CG9932 -	chr2L	13036527	intron	CG9932 -	chr2L_19_13035001	chr2L_13035001	RAL-235
322	chr2L	13405630	13405678	chr2L	13410447	13410495	Doc	12	4813	0.5	3.0	1.8	4.3	4865	chr2L	13405630	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410495	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	RAL-235
323	chr2L	13481449	13481472	chr2L	13482075	13482080	jockey	4	621	6.5	3.5	5.0	0.7	631	chr2L	13481449	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482080	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-235
326	chr2L	13560383	13560421	chr2L	13565224	13565262	F-element	14	4840	12.0	2.5	7.2	1.7	4879	chr2L	13560383	intron	kuz +	chr2L	13562822	intron	kuz +	chr2L	13565262	intron	kuz +	chr2L_14_13560001	chr2L_13560001	RAL-235
336	chr2L	13761814	13761833	chr2L	13762911	13762916	Doc	6	1105	4.0	3.0	3.5	1.3	1102	chr2L	13761814	intron	TM9SF4 +	chr2L	13762365	intron	TM9SF4 +	chr2L	13762916	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-235
340	chr2L	13853085	13853089	chr2L	13862254	13862259	roo	4	9170	7.0	0.5	3.8	0.8	9174	chr2L	13853085	intron	CenG1A +	chr2L	13857672	intron	CenG1A +	chr2L	13862259	intron	CenG1A +	chr2L_4_13855001	chr2L_13855001	RAL-235
341	chr2L	13853092	13853116	chr2L	13862251	13862278	roo	7	9164	5.0	0.5	2.8	1.8	9186	chr2L	13853092	intron	CenG1A +	chr2L	13857685	intron	CenG1A +	chr2L	13862278	intron	CenG1A +	chr2L_7_13855001	chr2L_13855001	RAL-235
352	chr2L	14642558	14642593	chr2L	14651740	14651776	roo	8	9183	4.5	4.5	4.5	1.5	9218	chr2L	14642558	intron	osp -	chr2L	14647167	intron	osp -	chr2L	14651776	intron	osp -	chr2L_8_14645001	chr2L_14645001	RAL-235
356	chr2L	14803860	14803909	chr2L	14809083	14809122	copia	14	5216	8.0	4.0	6.0	2.0	5262	chr2L	14803860	intergenic	not near genes	chr2L	14806491	intergenic	not near genes	chr2L	14809122	intergenic	not near genes	chr2L_14_14805001	chr2L_14805001	RAL-235
359	chr2L	14889949	14889977	chr2L	14890394	14890422	jockey	8	444	4.0	6.0	5.0	1.3	473	chr2L	14889949	intergenic	not near genes	chr2L	14890186	intergenic	not near genes	chr2L	14890422	intergenic	not near genes	chr2L_8_14890001	chr2L_14890001	RAL-235
363	chr2L	14984379	14984396	chr2L	14991991	14992015	opus	5	7616	2.0	4.0	3.0	1.2	7636	chr2L	14984379	intron	mol -	chr2L	14988197	intron	mol -	chr2L	14992015	intron	mol -	chr2L_5_14985001	chr2L_14985001	RAL-235
376	chr2L	15446043	15446077	chr2L	15453519	15453566	blood	11	7478	4.5	2.5	3.5	2.4	7523	chr2L	15446043	intergenic	not near genes	chr2L	15449804	intergenic	not near genes	chr2L	15453566	intergenic	not near genes	chr2L_11_15445001	chr2L_15445001	RAL-235
380	chr2L	15586389	15586429	chr2L	15593461	15593499	297	8	7069	8.5	0.0	4.2	1.5	7110	chr2L	15586389	intergenic	not near genes	chr2L	15589944	intergenic	not near genes	chr2L	15593499	intergenic	not near genes	chr2L_8_15585001	chr2L_15585001	RAL-235
388	chr2L	15826879	15826885	chr2L	15829292	15829299	Tabor	4	2414	6.5	9.5	8.0	0.4	2420	chr2L	15826879	intergenic	not near genes	chr2L	15828089	intergenic	not near genes	chr2L	15829299	intergenic	not near genes	chr2L_4_15825001	chr2L_15825001	RAL-235
393	chr2L	15956021	15956052	chr2L	15957488	15957538	hobo	10	1483	4.5	4.0	4.2	1.9	1517	chr2L	15956021	intron	beat-Ib -	chr2L	15956780	intron	beat-Ib -	chr2L	15957538	intron	beat-Ib -	chr2L_10_15955001	chr2L_15955001	RAL-235
398	chr2L	16141155	16141193	chr2L	16146370	16146420	copia	13	5223	2.5	1.0	1.8	4.6	5265	chr2L	16141155	intergenic	not near genes	chr2L	16143788	intergenic	not near genes	chr2L	16146420	intergenic	not near genes	chr2L_13_16140001	chr2L_16140001	RAL-235
399	chr2L	16153723	16153748	chr2L	16160811	16160836	297	9	7086	5.0	4.0	4.5	1.6	7113	chr2L	16153723	intergenic	not near genes	chr2L	16157280	intergenic	not near genes	chr2L	16160836	intergenic	not near genes	chr2L_9_16155001	chr2L_16155001	RAL-235
407	chr2L	16511968	16511993	chr2L	16519115	16519140	HMS-Beagle	4	7147	8.5	7.5	8.0	0.4	7172	chr2L	16511968	intron	CG5953 -	chr2L	16515554	intron	CG5953 -	chr2L	16519140	intron	CG5953 -	chr2L_4_16515001	chr2L_16515001	RAL-235
416	chr2L	16958088	16958117	chr2L	16962896	16962925	Doc	13	4807	8.5	6.0	7.2	1.6	4837	chr2L	16958088	intergenic	not near genes	chr2L	16960506	intergenic	not near genes	chr2L	16962925	intergenic	not near genes	chr2L_13_16960001	chr2L_16960001	RAL-235
417	chr2L	16958119	16958136	chr2L	16962889	16962929	Doc	5	4797	5.0	5.0	5.0	0.8	4810	chr2L	16958119	intergenic	not near genes	chr2L	16960524	intergenic	not near genes	chr2L	16962929	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-235
420	chr2L	17167555	17167591	chr2L	17167806	17167852	pogo	6	248	3.5	3.0	3.2	1.4	297	chr2L	17167555	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167704	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167852	intron,intron	CG34106 +,beat-IIIa +	chr2L_6_17165001	chr2L_17165001	RAL-235
422	chr2L	17199155	17199191	chr2L	17200630	17200652	hobo	10	1478	4.5	3.5	4.0	2.0	1497	chr2L	17199155	intron	beat-IIIc -	chr2L	17199904	intron	beat-IIIc -	chr2L	17200652	intron	beat-IIIc -	chr2L_10_17195001	chr2L_17195001	RAL-235
426	chr2L	17273177	17273212	chr2L	17277976	17278015	F-element	6	4796	2.5	4.5	3.5	1.3	4838	chr2L	17273177	intergenic	not near genes	chr2L	17275596	intergenic	not near genes	chr2L	17278015	intergenic	not near genes	chr2L_6_17275001	chr2L_17275001	RAL-235
427	chr2L	17335499	17335524	chr2L	17336714	17336739	1360	14	1214	2.0	2.5	2.2	4.4	1240	chr2L	17335499	intergenic	not near genes	chr2L	17336119	intergenic	not near genes	chr2L	17336739	intergenic	not near genes	chr2L_14_17335001	chr2L_17335001	RAL-235
435	chr2L	17687502	17687522	chr2L	17692267	17692277	F-element	5	4763	2.0	2.0	2.0	1.7	4775	chr2L	17687502	intron	CadN -	chr2L	17689890	intron	CadN -	chr2L	17692277	intron	CadN -	chr2L_5_17685001	chr2L_17685001	RAL-235
437	chr2L	17727851	17727879	chr2L	17729338	17729340	hobo	4	1480	1.0	8.5	4.8	0.7	1489	chr2L	17727851	intron	CadN -	chr2L	17728596	intron	CadN -	chr2L	17729340	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-235
441	chr2L	17819899	17819939	chr2L	17825123	17825146	copia	10	5221	4.5	2.0	3.2	2.4	5247	chr2L	17819899	intron	CadN2 -	chr2L	17822522	intron	CadN2 -	chr2L	17825146	intron	CadN2 -	chr2L_10_17820001	chr2L_17820001	RAL-235
444	chr2L	17911940	17911987	chr2L	17914138	17914185	pogo	5	2194	5.0	6.5	5.8	0.7	2245	chr2L	17911940	intergenic	not near genes	chr2L	17913062	intergenic	not near genes	chr2L	17914185	intergenic	CG43271 -	chr2L_5_17910001	chr2L_17910001	RAL-235
446	chr2L	17951939	17951979	chr2L	17953425	17953451	hobo	11	1483	5.0	5.5	5.2	1.8	1512	chr2L	17951939	intergenic	CR44398 -,CR44397 -	chr2L	17952695	intergenic	not near genes	chr2L	17953451	intergenic	not near genes	chr2L_11_17950001	chr2L_17950001	RAL-235
447	chr2L	18051872	18051900	chr2L	18061023	18061036	roo	7	9160	6.5	4.5	5.5	1.1	9164	chr2L	18051872	intron	rdo +	chr2L	18056454	intron	rdo +	chr2L	18061036	intron	rdo +	chr2L_7_18055001	chr2L_18055001	RAL-235
455	chr2L	18408009	18408032	chr2L	18412813	18412823	Doc	6	4802	6.0	0.0	3.0	1.5	4814	chr2L	18408009	intergenic	not near genes	chr2L	18410416	intergenic	not near genes	chr2L	18412823	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	RAL-235
467	chr2L	19147355	19147403	chr2L	19154404	19154433	297	17	7045	3.5	3.0	3.2	4.0	7078	chr2L	19147355	intron	brat +	chr2L	19150894	intron	brat +	chr2L	19154433	intron	brat +	chr2L_17_19150001	chr2L_19150001	RAL-235
474	chr2L	19345002	19345050	chr2L	19357231	19357254	blood	11	12225	1.5	4.5	3.0	2.8	12252	chr2L	19345002	intron	dnt -	chr2L	19351128	intron	dnt -	chr2L	19357254	intron	dnt -	chr2L_11_19350001	chr2L_19350001	RAL-235
486	chr2L	19620081	19620132	chr2L	19621081	19621141	jockey	9	995	3.5	3.0	3.2	2.1	1060	chr2L	19620081	intron	Lar +	chr2L	19620611	intron	Lar +	chr2L	19621141	intron	Lar +	chr2L_9_19620001	chr2L_19620001	RAL-235
487	chr2L	19652552	19652604	chr2L	19674006	19674022	opus	19	21449	5.5	8.0	6.8	2.4	21470	chr2L	19652552	intron	Lar +	chr2L	19663287	intron	Lar +	chr2L	19674022	intron	Lar +	chr2L_19_19660001	chr2L_19660001	RAL-235
489	chr2L	19703540	19703568	chr2L	19712683	19712712	roo	10	9149	4.5	2.5	3.5	2.2	9172	chr2L	19703540	intron	Lar +	chr2L	19708126	intron	Lar +	chr2L	19712712	intron	Lar +	chr2L_10_19705001	chr2L_19705001	RAL-235
491	chr2L	19737362	19737380	chr2L	19740823	19740845	1360	6	3469	4.0	4.5	4.2	1.2	3483	chr2L	19737362	intergenic	Nf-YB +	chr2L	19739104	intergenic	not near genes	chr2L	19740845	intergenic	not near genes	chr2L_6_19735001	chr2L_19735001	RAL-235
492	chr2L	19762801	19762839	chr2L	19763055	19763095	pogo	15	257	2.5	6.5	4.5	2.7	294	chr2L	19762801	5` UTR	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763095	intron	fbp -	chr2L_15_19760001	chr2L_19760001	RAL-235
503	chr2L	20005880	20005905	chr2L	20010954	20011001	flea	10	5090	5.0	6.0	5.5	1.5	5121	chr2L	20005880	intron	CG43861 -	chr2L	20008440	intron	CG43861 -	chr2L	20011001	intron	CG43861 -	chr2L_10_20005001	chr2L_20005001	RAL-235
512	chr2L	20272106	20272121	chr2L	20282827	20282846	copia	4	10727	10.0	6.5	8.2	0.4	10740	chr2L	20272106	intergenic	not near genes	chr2L	20277476	intergenic	not near genes	chr2L	20282846	intergenic	not near genes	chr2L_4_20275001	chr2L_20275001	RAL-235
513	chr2L	20272122	20272135	chr2L	20282823	20282866	copia	9	10723	7.5	5.5	6.5	1.2	10744	chr2L	20272122	intergenic	not near genes	chr2L	20277494	intergenic	not near genes	chr2L	20282866	intergenic	not near genes	chr2L_9_20275001	chr2L_20275001	RAL-235
516	chr2L	20303171	20303191	chr2L	20310650	20310678	blood	7	7484	0.0	6.5	3.2	1.7	7507	chr2L	20303171	intergenic	not near genes	chr2L	20306924	intergenic	not near genes	chr2L	20310678	intergenic	not near genes	chr2L_7_20305001	chr2L_20305001	RAL-235
522	chr2L	20372200	20372260	chr2L	20372470	20372481	pogo	7	260	1.5	5.5	3.5	1.6	281	chr2L	20372200	intergenic	Ugt37a1 -	chr2L	20372340	intergenic	Ugt37a1 -	chr2L	20372481	exon	Ugt37a1 -	chr2L_7_20370001	chr2L_20370001	RAL-235
533	chr2L	20568649	20568680	chr2L	20569053	20569089	X-element	9	408	5.0	3.5	4.2	1.7	440	chr2L	20568649	intron	CR45347 +	chr2L	20568869	intron	CR45347 +	chr2L	20569089	intron	CR45347 +	chr2L_9_20565001	chr2L_20565001	RAL-235
534	chr2L	20576203	20576229	chr2L	20583687	20583717	blood	5	7487	7.5	4.5	6.0	0.7	7514	chr2L	20576203	intergenic	CR45347 +	chr2L	20579960	intergenic	not near genes	chr2L	20583717	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-235
537	chr2L	20639482	20639531	chr2L	20639777	20639821	INE-1	11	291	2.0	3.0	2.5	3.1	339	chr2L	20639482	intergenic	not near genes	chr2L	20639652	intergenic	CG31680 +	chr2L	20639821	intergenic	CG31680 +	chr2L_11_20635001	chr2L_20635001	RAL-235
541	chr2L	20835794	20835840	chr2L	20836531	20836566	Quasimodo	23	734	5.0	5.0	5.0	3.8	772	chr2L	20835794	5` UTR	Oseg5 -	chr2L	20836180	intergenic	Oseg5 -,Spn38F -	chr2L	20836566	intergenic	Spn38F -	chr2L_23_20835001	chr2L_20835001	RAL-235
542	chr2L	20891514	20891533	chr2L	20896635	20896654	jockey	4	5119	4.0	3.5	3.8	0.8	5140	chr2L	20891514	intron,intron	CG43739 -,sky -	chr2L	20894084	intron,intron	CG43739 -,sky -	chr2L	20896654	intron,intron	CG43739 -,sky -	chr2L_4_20890001	chr2L_20890001	RAL-235
543	chr2L	20901438	20901483	chr2L	20902617	20902652	1360	4	1167	2.0	1.5	1.8	1.4	1214	chr2L	20901438	intron,intron	CG43739 -,sky -	chr2L	20902045	intron,intron	CG43739 -,sky -	chr2L	20902652	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-235
548	chr2L	20976633	20976671	chr2L	20981468	20981490	X-element	8	4832	4.0	4.0	4.0	1.6	4857	chr2L	20976633	intron	CG42238 -	chr2L	20979062	intron	CG42238 -	chr2L	20981490	intron	CG42238 -	chr2L_8_20975001	chr2L_20975001	RAL-235
549	chr2L	21020287	21020306	chr2L	21023948	21023998	NOF	4	3684	4.0	2.5	3.2	1.0	3711	chr2L	21020287	intron	CG42238 -	chr2L	21022142	intron	CG42238 -	chr2L	21023998	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-235
550	chr2L	21041127	21041165	chr2L	21049403	21049430	Tirant	13	8272	5.0	7.0	6.0	1.9	8303	chr2L	21041127	intron	CG42238 -	chr2L	21045278	intron	CG42238 -	chr2L	21049430	intron	CG42238 -	chr2L_13_21045001	chr2L_21045001	RAL-235
556	chr2L	21347533	21347583	chr2L	21355024	21355064	blood	16	7488	3.5	4.0	3.8	3.3	7531	chr2L	21347533	intron	Tsp39D +	chr2L	21351298	intron	Tsp39D +	chr2L	21355064	intron	Tsp39D +	chr2L_16_21350001	chr2L_21350001	RAL-235
558	chr2L	21597025	21597056	chr2L	21604773	21604814	roo	9	7760	3.0	2.5	2.8	2.4	7789	chr2L	21597025	intergenic	not near genes	chr2L	21600920	intergenic	not near genes	chr2L	21604814	intergenic	not near genes	chr2L_9_21600001	chr2L_21600001	RAL-235
563	chr2L	21981667	21981714	chr2L	21990852	21990887	roo	10	9173	4.0	8.5	6.2	1.4	9220	chr2L	21981667	exon	CG2528 -	chr2L	21986277	intron	CG2528 -	chr2L	21990887	exon	CG2528 -	chr2L_10_21985001	chr2L_21985001	RAL-235
568	chr2L	22548927	22548937	chr2L	22550156	22550180	1360	5	1240	1.0	9.0	5.0	0.8	1253	chr2L	22548927	intergenic	CG17490 +	chr2L	22549554	intergenic	not near genes	chr2L	22550180	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	RAL-235
569	chr2L	22581955	22581983	chr2L	22583764	22583784	S-element	5	1807	6.5	3.5	5.0	0.8	1829	chr2L	22581955	intron	CG17494 +	chr2L	22582870	intron	CG17494 +	chr2L	22583784	intron	CG17494 +	chr2L_5_22580001	chr2L_22580001	RAL-235
570	chr2L	22581989	22582002	chr2L	22583759	22583811	S-element	8	1799	3.5	3.0	3.2	1.9	1822	chr2L	22581989	intron	CG17494 +	chr2L	22582900	intron	CG17494 +	chr2L	22583811	intron	CG17494 +	chr2L_8_22580001	chr2L_22580001	RAL-235
572	chr2L	22679807	22679814	chr2L	22684583	22684606	F-element	4	4786	12.5	11.0	11.8	0.3	4799	chr2L	22679807	intron	CG40006 -	chr2L	22682206	intron	CG40006 -	chr2L	22684606	intron	CG40006 -	chr2L_4_22680001	chr2L_22680001	RAL-235
573	chr2L	22679816	22679831	chr2L	22684572	22684620	F-element	6	4783	6.0	9.5	7.8	0.7	4804	chr2L	22679816	intron	CG40006 -	chr2L	22682218	intron	CG40006 -	chr2L	22684620	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	RAL-235
575	chr2L	22776405	22776449	chr2L	22778214	22778258	S-element	18	1808	6.5	5.5	6.0	2.6	1853	chr2L	22776405	intergenic	not near genes	chr2L	22777332	intergenic	not near genes	chr2L	22778258	intergenic	not near genes	chr2L_18_22775001	chr2L_22775001	RAL-235
578	chr2R	1516586	1516600	chr2R	1521334	1521341	1731	6	4747	15.0	9.5	12.2	0.5	4755	chr2R	1516586	exon	Maf1 -	chr2R	1518964	intron	Maf1 -	chr2R	1521341	5` UTR	Maf1 -	chr2R_6_1515001	chr2R_1515001	RAL-235
581	chr2R	2498983	2499014	chr2R	2508131	2508180	roo	7	9161	6.5	4.0	5.2	1.1	9197	chr2R	2498983	intron	MFS17 -	chr2R	2503582	intron	MFS17 -	chr2R	2508180	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	RAL-235
587	chr2R	3532624	3532642	chr2R	3536087	3536105	Doc	6	3463	5.0	7.5	6.2	0.8	3481	chr2R	3532624	intergenic	not near genes	chr2R	3534364	intergenic	not near genes	chr2R	3536105	intergenic	not near genes	chr2R_6_3530001	chr2R_3530001	RAL-235
590	chr2R	4622963	4622986	chr2R	4624112	4624133	1360	7	1151	1.5	6.0	3.8	1.5	1170	chr2R	4622963	intergenic	CR44101 -	chr2R	4623548	intergenic	not near genes	chr2R	4624133	intergenic	not near genes	chr2R_7_4620001	chr2R_4620001	RAL-235
591	chr2R	4624624	4624665	chr2R	4626549	4626590	Bica	12	1924	5.5	5.0	5.2	1.9	1966	chr2R	4624624	intergenic	not near genes	chr2R	4625607	intergenic	not near genes	chr2R	4626590	intergenic	not near genes	chr2R_12_4625001	chr2R_4625001	RAL-235
594	chr2R	4838852	4838903	chr2R	4840395	4840446	transib2	14	1539	5.0	4.0	4.5	2.5	1594	chr2R	4838852	intergenic	not near genes	chr2R	4839649	intergenic	not near genes	chr2R	4840446	intergenic	not near genes	chr2R_14_4835001	chr2R_4835001	RAL-235
595	chr2R	4870725	4870738	chr2R	4871256	4871268	R1A1-element	6	530	4.0	3.5	3.8	1.2	543	chr2R	4870725	intergenic	not near genes	chr2R	4870996	intergenic	not near genes	chr2R	4871268	intergenic	not near genes	chr2R_6_4870001	chr2R_4870001	RAL-235
604	chr2R	5417980	5418022	chr2R	5420632	5420659	Burdock	13	2648	7.0	7.5	7.2	1.6	2679	chr2R	5417980	intron	laccase2 +	chr2R	5419320	intron	laccase2 +	chr2R	5420659	intron	laccase2 +	chr2R_13_5415001	chr2R_5415001	RAL-235
611	chr2R	5543211	5543223	chr2R	5547307	5547326	invader1	6	4101	0.0	9.5	4.8	1.0	4115	chr2R	5543211	intron	CG30438 +	chr2R	5545268	intron	CG30438 +	chr2R	5547326	intron	CG30438 +	chr2R_6_5545001	chr2R_5545001	RAL-235
618	chr2R	5869257	5869306	chr2R	5874353	5874392	flea	13	5091	6.5	4.5	5.5	2.0	5135	chr2R	5869257	intergenic	not near genes	chr2R	5871824	intergenic	not near genes	chr2R	5874392	intergenic	not near genes	chr2R_13_5870001	chr2R_5870001	RAL-235
619	chr2R	5902147	5902179	chr2R	5909726	5909728	17.6	6	7568	4.0	3.0	3.5	1.3	7581	chr2R	5902147	intron	CG43366 +	chr2R	5905938	intron	CG43366 +	chr2R	5909728	intron	CG43366 +	chr2R_6_5905001	chr2R_5905001	RAL-235
631	chr2R	6494533	6494549	chr2R	6499291	6499330	F-element	6	4773	0.5	2.5	1.5	2.4	4797	chr2R	6494533	intergenic	not near genes	chr2R	6496932	intergenic	not near genes	chr2R	6499330	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-235
632	chr2R	6579758	6579789	chr2R	6584864	6584893	flea	11	5103	12.5	8.5	10.5	1.0	5135	chr2R	6579758	intron	jing +	chr2R	6582326	intron	jing +	chr2R	6584893	intron	jing +	chr2R_11_6580001	chr2R_6580001	RAL-235
634	chr2R	6952152	6952185	chr2R	6959746	6959783	opus	16	7598	2.0	5.5	3.8	3.3	7631	chr2R	6952152	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955968	intron,intron	mim -,CheB42c -	chr2R	6959783	intron,intron	mim -,CheB42c -	chr2R_16_6955001	chr2R_6955001	RAL-235
640	chr2R	7196549	7196597	chr2R	7201344	7201387	F-element	19	4791	5.5	0.5	3.0	4.8	4838	chr2R	7196549	intron	pk +	chr2R	7198968	intron	pk +	chr2R	7201387	intron	pk +	chr2R_19_7195001	chr2R_7195001	RAL-235
643	chr2R	7434887	7434910	chr2R	7439195	7439231	Juan	6	4316	7.0	6.0	6.5	0.8	4344	chr2R	7434887	intergenic	so +	chr2R	7437059	intergenic	not near genes	chr2R	7439231	intergenic	not near genes	chr2R_6_7435001	chr2R_7435001	RAL-235
645	chr2R	7608395	7608430	chr2R	7613616	7613633	I-element	8	5219	1.0	1.0	1.0	4.0	5238	chr2R	7608395	intron	CG1358 -	chr2R	7611014	intron	CG1358 -	chr2R	7613633	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	RAL-235
648	chr2R	7815652	7815695	chr2R	7822141	7822148	Burdock	11	6479	4.5	3.5	4.0	2.2	6496	chr2R	7815652	intergenic	CG1882 +	chr2R	7818900	intergenic	not near genes	chr2R	7822148	3` UTR	cathD -	chr2R_11_7815001	chr2R_7815001	RAL-235
649	chr2R	7869179	7869198	chr2R	7873984	7874003	Doc	5	4800	9.0	4.5	6.8	0.6	4824	chr2R	7869179	intron	Dgk -	chr2R	7871591	intron	Dgk -	chr2R	7874003	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-235
650	chr2R	7869199	7869215	chr2R	7873978	7874017	Doc	9	4792	6.0	3.5	4.8	1.6	4818	chr2R	7869199	intron	Dgk -	chr2R	7871608	intron	Dgk -	chr2R	7874017	intron	Dgk -	chr2R_9_7870001	chr2R_7870001	RAL-235
663	chr2R	8160917	8160952	chr2R	8161027	8161040	1360	15	104	3.5	6.0	4.8	2.6	123	chr2R	8160917	exon	CG8708 -	chr2R	8160978	intron	CG8708 -	chr2R	8161040	intron	CG8708 -	chr2R_15_8160001	chr2R_8160001	RAL-235
669	chr2R	8330855	8330892	chr2R	8331350	8331387	roo	13	498	4.0	7.5	5.8	1.9	532	chr2R	8330855	intron	pdm3 +	chr2R	8331121	intron	pdm3 +	chr2R	8331387	intron	pdm3 +	chr2R_13_8330001	chr2R_8330001	RAL-235
676	chr2R	8566047	8566061	chr2R	8567008	8567025	1360	9	964	4.5	6.0	5.2	1.5	978	chr2R	8566047	5` UTR	Cyp6a14 -	chr2R	8566536	5` UTR	Cyp6a14 -	chr2R	8567025	5` UTR	Cyp6a14 -	chr2R_9_8565001	chr2R_8565001	RAL-235
678	chr2R	8722756	8722793	chr2R	8723003	8723046	pogo	7	246	3.5	4.5	4.0	1.4	290	chr2R	8722756	intron	CG14767 -	chr2R	8722901	intron	CG14767 -	chr2R	8723046	intron	CG14767 -	chr2R_7_8720001	chr2R_8720001	RAL-235
684	chr2R	9151283	9151324	chr2R	9157773	9157814	Burdock	11	6485	7.0	3.0	5.0	1.8	6531	chr2R	9151283	exon	CG30345 +	chr2R	9154548	intergenic	not near genes	chr2R	9157814	intergenic	CG8008 -	chr2R_11_9150001	chr2R_9150001	RAL-235
685	chr2R	9212677	9212725	chr2R	9213182	9213182	roo	7	492	3.0	5.5	4.2	1.3	505	chr2R	9212677	intergenic	CR45309 +	chr2R	9212930	intergenic	CR45309 +	chr2R	9213182	5` UTR	CR45309 +	chr2R_7_9210001	chr2R_9210001	RAL-235
689	chr2R	9480078	9480105	chr2R	9490611	9490656	roo	19	10547	6.5	7.5	7.0	2.4	10578	chr2R	9480078	intergenic	not near genes	chr2R	9485367	intergenic	not near genes	chr2R	9490656	intergenic	not near genes	chr2R_19_9485001	chr2R_9485001	RAL-235
692	chr2R	9726603	9726643	chr2R	9734168	9734214	17.6	11	7569	4.0	6.5	5.2	1.8	7611	chr2R	9726603	intron	sqa -	chr2R	9730408	intron	sqa -	chr2R	9734214	intron	sqa -	chr2R_11_9730001	chr2R_9730001	RAL-235
693	chr2R	9871022	9871068	chr2R	9871528	9871551	roo	8	499	6.5	3.0	4.8	1.4	529	chr2R	9871022	intron	cbx -	chr2R	9871286	intron	cbx -	chr2R	9871551	intron,5` UTR	cbx -,CG18446 +	chr2R_8_9870001	chr2R_9870001	RAL-235
694	chr2R	9945455	9945467	chr2R	9945627	9945678	BS	6	204	2.0	4.5	3.2	1.4	223	chr2R	9945455	intron	Mef2 -	chr2R	9945566	intron	Mef2 -	chr2R	9945678	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	RAL-235
698	chr2R	10005857	10005880	chr2R	10007018	10007054	1360	4	1168	3.5	1.5	2.5	1.1	1197	chr2R	10005857	intron	Pka-R2 -	chr2R	10006456	intron	Pka-R2 -	chr2R	10007054	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-235
706	chr2R	10176885	10176912	chr2R	10186072	10186081	roo	9	9184	3.0	7.5	5.2	1.5	9196	chr2R	10176885	intron	KCNQ -	chr2R	10181483	intron	KCNQ -	chr2R	10186081	intron	KCNQ -	chr2R_9_10180001	chr2R_10180001	RAL-235
718	chr2R	10585583	10585590	chr2R	10594165	10594168	Tirant	4	8588	0.0	4.0	2.0	1.3	8585	chr2R	10585583	intron	psq +	chr2R	10589876	intron	psq +	chr2R	10594168	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-235
719	chr2R	10622336	10622368	chr2R	10637120	10637146	mdg1	7	14781	8.0	3.5	5.8	1.0	14810	chr2R	10622336	intron	CG11883 +	chr2R	10629741	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_7_10625001	chr2R_10625001	RAL-235
727	chr2R	10948039	10948056	chr2R	10955590	10955594	17.6	5	7552	1.5	3.5	2.5	1.4	7555	chr2R	10948039	intergenic	not near genes	chr2R	10951816	intergenic	not near genes	chr2R	10955594	intergenic	not near genes	chr2R_5_10950001	chr2R_10950001	RAL-235
729	chr2R	10979659	10979680	chr2R	10980127	10980168	297	4	480	0.5	3.0	1.8	1.4	509	chr2R	10979659	intergenic	not near genes	chr2R	10979914	intergenic	not near genes	chr2R	10980168	intergenic	not near genes	chr2R_4_10975001	chr2R_10975001	RAL-235
731	chr2R	11009807	11009842	chr2R	11018996	11019025	roo	5	9181	4.5	3.0	3.8	1.0	9218	chr2R	11009807	intron	luna -	chr2R	11014416	intron	luna -	chr2R	11019025	intron	luna -	chr2R_5_11010001	chr2R_11010001	RAL-235
732	chr2R	11019871	11019908	chr2R	11024950	11024976	jockey	5	5076	1.0	2.0	1.5	2.0	5105	chr2R	11019871	intron	luna -	chr2R	11022424	intron	luna -	chr2R	11024976	intron	luna -	chr2R_5_11020001	chr2R_11020001	RAL-235
740	chr2R	11207800	11207845	chr2R	11208009	11208043	BS	9	203	6.5	11.0	8.8	0.9	243	chr2R	11207800	intron	shn +	chr2R	11207922	intron	shn +	chr2R	11208043	intron	shn +	chr2R_9_11205001	chr2R_11205001	RAL-235
743	chr2R	11415503	11415551	chr2R	11418672	11418719	opus	12	3160	2.5	10.0	6.2	1.7	3216	chr2R	11415503	intron	Drip -	chr2R	11417111	intron	Drip -	chr2R	11418719	intron	Drip -	chr2R_12_11415001	chr2R_11415001	RAL-235
744	chr2R	11472638	11472648	chr2R	11473855	11473860	pogo	5	1216	9.0	6.5	7.8	0.6	1222	chr2R	11472638	intergenic	not near genes	chr2R	11473249	intergenic	not near genes	chr2R	11473860	intergenic	not near genes	chr2R_5_11470001	chr2R_11470001	RAL-235
745	chr2R	11472657	11472678	chr2R	11473848	11473860	pogo	7	1203	3.5	5.5	4.5	1.3	1203	chr2R	11472657	intergenic	not near genes	chr2R	11473258	intergenic	not near genes	chr2R	11473860	intergenic	not near genes	chr2R_7_11470001	chr2R_11470001	RAL-235
762	chr2R	12501674	12501727	chr2R	12503850	12503891	Rt1c	4	2168	1.0	2.5	1.8	1.4	2217	chr2R	12501674	intron	fdl -	chr2R	12502782	intron	fdl -	chr2R	12503891	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-235
767	chr2R	12707521	12707549	chr2R	12715902	12715929	roo	13	8384	3.0	5.0	4.0	2.6	8408	chr2R	12707521	intron	CG42663 +	chr2R	12711725	intron	CG42663 +	chr2R	12715929	intron	CG42663 +	chr2R_13_12710001	chr2R_12710001	RAL-235
769	chr2R	12819451	12819468	chr2R	12824534	12824537	jockey	4	5077	2.5	5.5	4.0	0.8	5086	chr2R	12819451	intergenic	not near genes	chr2R	12821994	intergenic	not near genes	chr2R	12824537	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-235
774	chr2R	13136831	13136863	chr2R	13141649	13141675	Doc	4	4816	2.5	1.5	2.0	1.3	4844	chr2R	13136831	exon	Cap-G +	chr2R	13139253	intron	Cap-G +	chr2R	13141675	intron	Cap-G +	chr2R_4_13135001	chr2R_13135001	RAL-235
789	chr2R	13580483	13580533	chr2R	13580848	13580873	jockey	15	360	2.5	1.5	2.0	5.0	390	chr2R	13580483	3` UTR	CG6191 -	chr2R	13580678	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580873	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_15_13580001	chr2R_13580001	RAL-235
795	chr2R	13728119	13728166	chr2R	13735791	13735843	opus	6	7676	2.5	0.0	1.2	2.7	7724	chr2R	13728119	intron	fas +	chr2R	13731981	intron	fas +	chr2R	13735843	intron	fas +	chr2R_6_13730001	chr2R_13730001	RAL-235
801	chr2R	13905584	13905625	chr2R	13907586	13907617	Rt1a	6	1998	6.0	1.5	3.8	1.2	2033	chr2R	13905584	intron	shot -	chr2R	13906600	intron	shot -	chr2R	13907617	intron	shot -	chr2R_6_13905001	chr2R_13905001	RAL-235
812	chr2R	14394211	14394253	chr2R	14399020	14399027	Doc	8	4803	5.5	7.0	6.2	1.1	4816	chr2R	14394211	intergenic	not near genes	chr2R	14396619	intergenic	not near genes	chr2R	14399027	intergenic	not near genes	chr2R_8_14395001	chr2R_14395001	RAL-235
813	chr2R	14467289	14467326	chr2R	14476446	14476497	roo	12	9159	4.0	2.5	3.2	2.9	9208	chr2R	14467289	intergenic	not near genes	chr2R	14471893	intergenic	not near genes	chr2R	14476497	5` UTR	CR44462 +	chr2R_12_14470001	chr2R_14470001	RAL-235
814	chr2R	14497379	14497420	chr2R	14498552	14498590	1360	12	1176	3.5	2.5	3.0	3.0	1211	chr2R	14497379	3` UTR	Cpsf160 -	chr2R	14497984	intron	Cpsf160 -	chr2R	14498590	3` UTR	Cpsf160 -	chr2R_12_14495001	chr2R_14495001	RAL-235
822	chr2R	14889195	14889225	chr2R	14897823	14897841	Max-element	10	8627	8.5	0.0	4.2	1.9	8646	chr2R	14889195	intergenic	Cyp6a8 -	chr2R	14893518	intergenic	not near genes	chr2R	14897841	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	RAL-235
829	chr2R	15004715	15004750	chr2R	15005059	15005099	jockey	12	348	4.0	7.0	5.5	1.8	384	chr2R	15004715	intergenic	not near genes	chr2R	15004907	intergenic	not near genes	chr2R	15005099	intergenic	not near genes	chr2R_12_15000001	chr2R_15000001	RAL-235
830	chr2R	15015443	15015489	chr2R	15022882	15022920	mdg1	12	7436	2.0	1.5	1.8	4.3	7477	chr2R	15015443	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022920	intron	hbs +	chr2R_12_15015001	chr2R_15015001	RAL-235
832	chr2R	15084960	15085004	chr2R	15092029	15092073	297	13	7063	3.0	4.0	3.5	2.9	7113	chr2R	15084960	intergenic	not near genes	chr2R	15088516	intergenic	not near genes	chr2R	15092073	5` UTR	CR44457 +	chr2R_13_15085001	chr2R_15085001	RAL-235
833	chr2R	15119299	15119347	chr2R	15127798	15127848	Tirant	10	8488	3.0	2.5	2.8	2.6	8549	chr2R	15119299	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127848	intron	chn +	chr2R_10_15120001	chr2R_15120001	RAL-235
860	chr2R	16539622	16539629	chr2R	16544851	16544858	copia	4	5229	12.0	5.5	8.8	0.4	5236	chr2R	16539622	intergenic	not near genes	chr2R	16542240	intergenic	not near genes	chr2R	16544858	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	RAL-235
861	chr2R	16539632	16539643	chr2R	16544850	16544872	copia	4	5226	11.0	5.5	8.2	0.4	5240	chr2R	16539632	intergenic	not near genes	chr2R	16542252	intergenic	not near genes	chr2R	16544872	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	RAL-235
862	chr2R	16539646	16539670	chr2R	16544845	16544899	copia	9	5221	6.0	4.5	5.2	1.5	5253	chr2R	16539646	intergenic	not near genes	chr2R	16542272	intergenic	not near genes	chr2R	16544899	intergenic	not near genes	chr2R_9_16540001	chr2R_16540001	RAL-235
877	chr2R	17176371	17176386	chr2R	17182550	17182590	diver	8	6205	1.0	7.0	4.0	1.6	6219	chr2R	17176371	intergenic	not near genes	chr2R	17179480	intergenic	not near genes	chr2R	17182590	intergenic	not near genes	chr2R_8_17175001	chr2R_17175001	RAL-235
879	chr2R	17236509	17236540	chr2R	17241710	17241755	copia	8	5210	3.0	2.0	2.5	2.3	5246	chr2R	17236509	intron	mbl +	chr2R	17239132	intron	mbl +	chr2R	17241755	intron	mbl +	chr2R_8_17235001	chr2R_17235001	RAL-235
884	chr2R	17485899	17485950	chr2R	17490689	17490736	F-element	10	4788	5.0	5.0	5.0	1.7	4837	chr2R	17485899	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488318	intron	NT5E-2 +	chr2R	17490736	intron	NT5E-2 +	chr2R_10_17485001	chr2R_17485001	RAL-235
890	chr2R	17782346	17782394	chr2R	17783567	17783617	pogo	10	1221	3.5	5.5	4.5	1.8	1271	chr2R	17782346	intergenic	CG33981 -,fab1 -	chr2R	17782982	intergenic	not near genes	chr2R	17783617	intergenic	mir-31a -	chr2R_10_17780001	chr2R_17780001	RAL-235
891	chr2R	17784017	17784052	chr2R	17784275	17784308	pogo	6	256	0.5	1.0	0.8	3.3	291	chr2R	17784017	intergenic	mir-31a -	chr2R	17784162	intergenic	mir-31a -	chr2R	17784308	intergenic	mir-31a -	chr2R_6_17780001	chr2R_17780001	RAL-235
901	chr2R	18045653	18045701	chr2R	18046025	18046073	jockey	13	369	3.5	4.0	3.8	2.7	420	chr2R	18045653	intergenic	not near genes	chr2R	18045863	intergenic	not near genes	chr2R	18046073	intergenic	CG5767 -	chr2R_13_18045001	chr2R_18045001	RAL-235
902	chr2R	18111669	18111711	chr2R	18115557	18115599	F-element	12	3886	6.0	4.0	5.0	2.0	3930	chr2R	18111669	intergenic	not near genes	chr2R	18113634	intergenic	not near genes	chr2R	18115599	intergenic	not near genes	chr2R_12_18110001	chr2R_18110001	RAL-235
905	chr2R	18358380	18358402	chr2R	18372607	18372634	roo	9	14229	5.0	4.0	4.5	1.6	14254	chr2R	18358380	intergenic	not near genes	chr2R	18365507	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_9_18365001	chr2R_18365001	RAL-235
906	chr2R	18358403	18358412	chr2R	18372597	18372631	roo	7	14219	4.0	3.0	3.5	1.6	14228	chr2R	18358403	intergenic	not near genes	chr2R	18365517	intergenic	not near genes	chr2R	18372631	intergenic	not near genes	chr2R_7_18365001	chr2R_18365001	RAL-235
911	chr2R	18487826	18487854	chr2R	18495296	18495344	blood	7	7474	0.0	5.5	2.8	1.8	7518	chr2R	18487826	intron	CG30116 -	chr2R	18491585	intron	CG30116 -	chr2R	18495344	intron	CG30116 -	chr2R_7_18490001	chr2R_18490001	RAL-235
914	chr2R	18575810	18575826	chr2R	18581984	18582034	3S18	9	6193	3.0	2.5	2.8	2.4	6224	chr2R	18575810	intron	GEFmeso -	chr2R	18578922	intron	GEFmeso -	chr2R	18582034	intron	GEFmeso -	chr2R_9_18575001	chr2R_18575001	RAL-235
915	chr2R	18590860	18590879	chr2R	18600023	18600051	roo	5	9168	5.5	2.5	4.0	1.0	9191	chr2R	18590860	intron	GEFmeso -	chr2R	18595456	intron	GEFmeso -	chr2R	18600051	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-235
936	chr2R	19715839	19715857	chr2R	19723328	19723345	blood	6	7488	9.0	6.5	7.8	0.7	7506	chr2R	19715839	intergenic	not near genes	chr2R	19719592	intergenic	not near genes	chr2R	19723345	intergenic	not near genes	chr2R_6_19715001	chr2R_19715001	RAL-235
937	chr2R	19776593	19776620	chr2R	19779936	19779958	jockey	6	3341	3.5	6.0	4.8	1.0	3365	chr2R	19776593	intergenic	not near genes	chr2R	19778276	intergenic	not near genes	chr2R	19779958	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-235
940	chr2R	19914831	19914870	chr2R	19922263	19922302	mdg1	15	7426	6.0	3.0	4.5	2.7	7471	chr2R	19914831	intergenic	not near genes	chr2R	19918566	intergenic	not near genes	chr2R	19922302	intergenic	not near genes	chr2R_15_19915001	chr2R_19915001	RAL-235
943	chr2R	19957425	19957457	chr2R	19962632	19962647	copia	6	5209	4.0	1.5	2.8	1.6	5222	chr2R	19957425	intergenic	CG44623 +	chr2R	19960036	intergenic	not near genes	chr2R	19962647	intergenic	not near genes	chr2R_6_19960001	chr2R_19960001	RAL-235
946	chr2R	20069229	20069261	chr2R	20071879	20071881	opus	11	2644	5.5	4.0	4.8	1.9	2652	chr2R	20069229	intergenic	not near genes	chr2R	20070555	intergenic	not near genes	chr2R	20071881	intergenic	not near genes	chr2R_11_20070001	chr2R_20070001	RAL-235
947	chr2R	20069266	20069276	chr2R	20071876	20071926	opus	5	2631	4.0	3.0	3.5	1.1	2660	chr2R	20069266	intergenic	not near genes	chr2R	20070596	intergenic	not near genes	chr2R	20071926	intergenic	not near genes	chr2R_5_20070001	chr2R_20070001	RAL-235
959	chr2R	20783295	20783332	chr2R	20788087	20788100	F-element	6	4787	3.5	6.0	4.8	1.0	4805	chr2R	20783295	intergenic	not near genes	chr2R	20785698	intergenic	not near genes	chr2R	20788100	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-235
977	chr2R	21753065	21753117	chr2R	21753567	21753622	roo	17	501	3.5	3.0	3.2	4.0	557	chr2R	21753065	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753622	intergenic	not near genes	chr2R_17_21750001	chr2R_21750001	RAL-235
993	chr2R	22349684	22349714	chr2R	22351486	22351518	jockey	4	1800	4.5	6.5	5.5	0.6	1834	chr2R	22349684	intron	Liprin-gamma -	chr2R	22350601	intron	Liprin-gamma -	chr2R	22351518	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-235
994	chr2R	22360371	22360374	chr2R	22360824	22360827	jockey	4	453	7.5	3.0	5.2	0.6	456	chr2R	22360371	intron	Liprin-gamma -	chr2R	22360599	intron	Liprin-gamma -	chr2R	22360827	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-235
999	chr2R	22525729	22525786	chr2R	22529304	22529306	jockey	9	3568	4.5	2.0	3.2	2.1	3577	chr2R	22525729	intron	px -	chr2R	22527518	intron	px -	chr2R	22529306	intron	px -	chr2R_9_22525001	chr2R_22525001	RAL-235
1000	chr2R	22580418	22580443	chr2R	22586582	22586605	diver	4	6164	6.5	4.5	5.5	0.6	6187	chr2R	22580418	intron	dnr1 -	chr2R	22583512	intron	dnr1 -	chr2R	22586605	intron	dnr1 -	chr2R_4_22580001	chr2R_22580001	RAL-235
1005	chr2R	22774948	22774996	chr2R	22775386	22775435	jockey	10	436	3.5	6.0	4.8	1.7	487	chr2R	22774948	intron	CG42260 -	chr2R	22775192	intron	CG42260 -	chr2R	22775435	intron	CG42260 -	chr2R_10_22775001	chr2R_22775001	RAL-235
1020	chr2R	23402590	23402642	chr2R	23407686	23407727	flea	14	5092	4.5	9.0	6.8	1.8	5137	chr2R	23402590	intergenic	CG3520 -	chr2R	23405158	intergenic	not near genes	chr2R	23407727	intergenic	not near genes	chr2R_14_23405001	chr2R_23405001	RAL-235
1032	chr2R	24177215	24177266	chr2R	24184720	24184760	412	14	7502	5.0	4.5	4.8	2.4	7545	chr2R	24177215	3` UTR	Nop60B +	chr2R	24180988	intron	Nop60B +	chr2R	24184760	3` UTR	Nop60B +	chr2R_14_24180001	chr2R_24180001	RAL-235
1035	chr2R	24353407	24353460	chr2R	24361789	24361822	roo	19	8376	7.5	2.5	5.0	3.2	8415	chr2R	24353407	intron,intron	bs +,CR44811 -	chr2R	24357614	intron,intron	bs +,CR44811 -	chr2R	24361822	intron,intron	bs +,CR44811 -	chr2R_19_24355001	chr2R_24355001	RAL-235
1040	chr2R	24647553	24647610	chr2R	24655144	24655171	412	4	7581	0.0	2.0	1.0	2.0	7618	chr2R	24647553	intergenic	not near genes	chr2R	24651362	intergenic	not near genes	chr2R	24655171	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	RAL-235
1041	chr2R	24727889	24727917	chr2R	24735398	24735437	mdg1	5	7510	0.5	2.5	1.5	2.0	7548	chr2R	24727889	intron	Mid1 -	chr2R	24731663	intron	Mid1 -	chr2R	24735437	intron	Mid1 -	chr2R_5_24730001	chr2R_24730001	RAL-235
1056	chr2R	25141639	25141681	chr2R	25159339	25159391	roo	15	17706	2.5	5.5	4.0	3.0	17752	chr2R	25141639	intergenic	not near genes	chr2R	25150515	intergenic	not near genes	chr2R	25159391	intergenic	not near genes	chr2R_15_25150001	chr2R_25150001	RAL-235
1062	chr3L	110192	110242	chr3L	119379	119429	roo	10	9183	5.0	3.5	4.2	1.9	9237	chr3L	110192	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119429	intergenic	not near genes	chr3L_10_110001	chr3L_110001	RAL-235
1068	chr3L	402667	402717	chr3L	409740	409789	297	8	7065	2.5	4.0	3.2	1.9	7122	chr3L	402667	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409789	intergenic	not near genes	chr3L_8_405001	chr3L_405001	RAL-235
1078	chr3L	789904	789910	chr3L	790409	790415	roo	6	505	10.0	2.0	6.0	0.9	511	chr3L	789904	intergenic	not near genes	chr3L	790160	intergenic	not near genes	chr3L	790415	intergenic	not near genes	chr3L_6_790001	chr3L_790001	RAL-235
1079	chr3L	789911	789947	chr3L	790406	790413	roo	11	494	5.5	2.0	3.8	2.3	502	chr3L	789911	intergenic	not near genes	chr3L	790162	intergenic	not near genes	chr3L	790413	intergenic	not near genes	chr3L_11_790001	chr3L_790001	RAL-235
1082	chr3L	925180	925208	chr3L	932602	932631	mdg1	9	7440	1.0	3.0	2.0	3.0	7451	chr3L	925180	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932631	intron	Glut1 +	chr3L_9_925001	chr3L_925001	RAL-235
1084	chr3L	939754	939795	chr3L	940892	940927	jockey	12	1137	2.5	6.0	4.2	2.3	1173	chr3L	939754	intron	Glut1 +	chr3L	940340	intron	Glut1 +	chr3L	940927	intron	Glut1 +	chr3L_12_940001	chr3L_940001	RAL-235
1090	chr3L	1154133	1154162	chr3L	1163287	1163331	roo	7	9157	3.5	3.0	3.2	1.7	9198	chr3L	1154133	intron	bab2 -	chr3L	1158732	intron	bab2 -	chr3L	1163331	intron	bab2 -	chr3L_7_1155001	chr3L_1155001	RAL-235
1094	chr3L	1219584	1219625	chr3L	1227332	1227372	412	6	7746	1.5	0.5	1.0	3.0	7788	chr3L	1219584	intron	mwh +	chr3L	1223478	intron	mwh +	chr3L	1227372	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-235
1098	chr3L	1505976	1506031	chr3L	1513593	1513648	17.6	15	7617	9.0	4.0	6.5	2.0	7672	chr3L	1505976	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513648	intron,intron	Psa +,cue -	chr3L_15_1505001	chr3L_1505001	RAL-235
1105	chr3L	2108234	2108278	chr3L	2113453	2113502	copia	5	5222	1.0	6.0	3.5	1.1	5268	chr3L	2108234	intron	sls -	chr3L	2110868	intron	sls -	chr3L	2113502	intron	sls -	chr3L_5_2110001	chr3L_2110001	RAL-235
1114	chr3L	2447505	2447532	chr3L	2456669	2456703	roo	6	9165	3.5	4.0	3.8	1.2	9198	chr3L	2447505	intron	CG45186 +	chr3L	2452104	intron	CG45186 +	chr3L	2456703	intron	CG45186 +	chr3L_6_2450001	chr3L_2450001	RAL-235
1129	chr3L	2751440	2751454	chr3L	2755755	2755769	F-element	6	4313	14.5	8.0	11.2	0.5	4329	chr3L	2751440	intron	Mrtf -	chr3L	2753604	intron	Mrtf -	chr3L	2755769	intron	Mrtf -	chr3L_6_2750001	chr3L_2750001	RAL-235
1132	chr3L	2927831	2927869	chr3L	2936115	2936160	Tirant	8	8288	1.0	3.5	2.2	2.5	8329	chr3L	2927831	intron	Shab +	chr3L	2931996	intron	Shab +	chr3L	2936160	intron	Shab +	chr3L_8_2930001	chr3L_2930001	RAL-235
1138	chr3L	3040308	3040332	chr3L	3042115	3042129	S-element	4	1805	4.5	1.0	2.8	1.1	1821	chr3L	3040308	3` UTR	CG2162 +	chr3L	3041218	intergenic	not near genes	chr3L	3042129	intergenic	Jafrac2 +	chr3L_4_3040001	chr3L_3040001	RAL-235
1140	chr3L	3051731	3051750	chr3L	3051985	3052012	pogo	12	259	9.0	3.5	6.2	1.7	281	chr3L	3051731	3` UTR	CG32485 +	chr3L	3051872	intergenic	CG32485 +	chr3L	3052012	intergenic	CG32485 +	chr3L_12_3050001	chr3L_3050001	RAL-235
1145	chr3L	3281454	3281470	chr3L	3281947	3281986	Doc	6	502	2.0	5.0	3.5	1.3	532	chr3L	3281454	intron	CG12017 +	chr3L	3281720	intron	CG12017 +	chr3L	3281986	intron	CG12017 +	chr3L_6_3280001	chr3L_3280001	RAL-235
1148	chr3L	3475077	3475110	chr3L	3475522	3475559	jockey	6	454	1.0	4.0	2.5	1.7	482	chr3L	3475077	intron	CG42324 +	chr3L	3475318	intron	CG42324 +	chr3L	3475559	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-235
1157	chr3L	3833722	3833759	chr3L	3833983	3833985	pogo	11	256	1.5	2.5	2.0	3.7	263	chr3L	3833722	intron	enc +	chr3L	3833854	intron	enc +	chr3L	3833985	intron	enc +	chr3L_11_3830001	chr3L_3830001	RAL-235
1168	chr3L	4328737	4328754	chr3L	4336252	4336271	412	4	7516	4.0	2.0	3.0	1.0	7534	chr3L	4328737	intron	Cip4 -	chr3L	4332504	intron	Cip4 -	chr3L	4336271	exon	Cip4 -	chr3L_4_4330001	chr3L_4330001	RAL-235
1169	chr3L	4328756	4328764	chr3L	4336249	4336273	412	6	7502	2.5	2.5	2.5	1.7	7517	chr3L	4328756	intron	Cip4 -	chr3L	4332514	intron	Cip4 -	chr3L	4336273	exon	Cip4 -	chr3L_6_4330001	chr3L_4330001	RAL-235
1182	chr3L	4901111	4901150	chr3L	4907321	4907359	diver	10	6205	5.5	4.0	4.8	1.7	6248	chr3L	4901111	intergenic	CG13704 +	chr3L	4904235	intergenic	not near genes	chr3L	4907359	intergenic	not near genes	chr3L_10_4900001	chr3L_4900001	RAL-235
1184	chr3L	5034155	5034182	chr3L	5043313	5043347	roo	4	9165	3.5	0.5	2.0	1.3	9192	chr3L	5034155	intron	Con -	chr3L	5038751	intron	Con -	chr3L	5043347	intron	Con -	chr3L_4_5035001	chr3L_5035001	RAL-235
1185	chr3L	5045439	5045480	chr3L	5050240	5050280	Doc	18	4798	5.0	5.0	5.0	3.0	4841	chr3L	5045439	intron	Con -	chr3L	5047860	intron	Con -	chr3L	5050280	intron	Con -	chr3L_18_5045001	chr3L_5045001	RAL-235
1200	chr3L	5537725	5537756	chr3L	5538060	5538096	jockey	14	355	1.5	6.0	3.8	2.9	371	chr3L	5537725	intergenic	not near genes	chr3L	5537910	intergenic	CG10625 -	chr3L	5538096	intergenic	CG10625 -	chr3L_14_5535001	chr3L_5535001	RAL-235
1203	chr3L	5910012	5910063	chr3L	5910273	5910324	pogo	19	259	7.5	3.5	5.5	2.9	312	chr3L	5910012	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910324	intron	CG13288 +	chr3L_19_5910001	chr3L_5910001	RAL-235
1205	chr3L	6001668	6001717	chr3L	6004388	6004437	jockey	14	2718	4.5	2.5	3.5	3.1	2769	chr3L	6001668	intron	PVRAP +	chr3L	6003052	intron	PVRAP +	chr3L	6004437	intron	PVRAP +	chr3L_14_6000001	chr3L_6000001	RAL-235
1206	chr3L	6040351	6040352	chr3L	6042725	6042728	Doc	4	2376	11.0	5.5	8.2	0.4	2377	chr3L	6040351	intergenic	Jon65Aiv +	chr3L	6041540	intergenic	not near genes	chr3L	6042728	intergenic	not near genes	chr3L_4_6040001	chr3L_6040001	RAL-235
1207	chr3L	6040354	6040388	chr3L	6042722	6042759	Doc	13	2373	4.0	5.0	4.5	2.4	2405	chr3L	6040354	intergenic	Jon65Aiv +	chr3L	6041556	intergenic	not near genes	chr3L	6042759	intergenic	not near genes	chr3L_13_6040001	chr3L_6040001	RAL-235
1212	chr3L	6220902	6220944	chr3L	6230069	6230116	roo	15	9167	4.5	4.5	4.5	2.7	9214	chr3L	6220902	5` UTR	pncr008:3L +	chr3L	6225509	intergenic	not near genes	chr3L	6230116	intergenic	not near genes	chr3L_15_6225001	chr3L_6225001	RAL-235
1218	chr3L	6335007	6335036	chr3L	6335481	6335497	297	10	482	2.0	4.5	3.2	2.4	490	chr3L	6335007	intron	CG13300 -	chr3L	6335252	intron	CG13300 -	chr3L	6335497	intron	CG13300 -	chr3L_10_6335001	chr3L_6335001	RAL-235
1219	chr3L	6405643	6405685	chr3L	6432127	6432169	roo	16	26481	6.0	7.5	6.8	2.1	26526	chr3L	6405643	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432169	intron	CG42747 +	chr3L_16_6415001	chr3L_6415001	RAL-235
1223	chr3L	6781112	6781150	chr3L	6783137	6783177	Doc	10	2031	7.5	0.0	3.8	2.1	2065	chr3L	6781112	intergenic	not near genes	chr3L	6782144	intergenic	not near genes	chr3L	6783177	intergenic	not near genes	chr3L_10_6780001	chr3L_6780001	RAL-235
1225	chr3L	6855914	6855936	chr3L	6860703	6860732	Doc	6	4796	3.0	1.0	2.0	2.0	4818	chr3L	6855914	intergenic	not near genes	chr3L	6858323	intergenic	not near genes	chr3L	6860732	intergenic	not near genes	chr3L_6_6855001	chr3L_6855001	RAL-235
1228	chr3L	6887498	6887545	chr3L	6895008	6895053	roo	15	7507	5.5	7.0	6.2	2.1	7555	chr3L	6887498	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895053	intergenic	not near genes	chr3L_15_6890001	chr3L_6890001	RAL-235
1229	chr3L	6994872	6994917	chr3L	6995501	6995548	BS	8	629	1.5	2.5	2.0	2.7	676	chr3L	6994872	intergenic	bin +	chr3L	6995210	intergenic	not near genes	chr3L	6995548	intergenic	not near genes	chr3L_8_6995001	chr3L_6995001	RAL-235
1250	chr3L	7377296	7377348	chr3L	7380421	7380469	297	13	3121	3.0	3.0	3.0	3.2	3173	chr3L	7377296	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380469	intron	SMSr -	chr3L_13_7375001	chr3L_7375001	RAL-235
1255	chr3L	7498743	7498781	chr3L	7503540	7503568	F-element	15	4795	6.5	6.5	6.5	2.0	4825	chr3L	7498743	5` UTR	CG8539 -	chr3L	7501156	intergenic	not near genes	chr3L	7503568	intergenic	not near genes	chr3L_15_7500001	chr3L_7500001	RAL-235
1262	chr3L	7793692	7793742	chr3L	7800764	7800802	297	13	7066	3.0	6.0	4.5	2.4	7110	chr3L	7793692	intron	CG32369 -	chr3L	7797247	intron	CG32369 -	chr3L	7800802	intron	CG32369 -	chr3L_13_7795001	chr3L_7795001	RAL-235
1264	chr3L	7886501	7886547	chr3L	7889033	7889064	Stalker4	13	2534	2.0	3.5	2.8	3.4	2563	chr3L	7886501	intron	CG32365 +	chr3L	7887782	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_13_7885001	chr3L_7885001	RAL-235
1265	chr3L	7916819	7916853	chr3L	7926010	7926044	roo	11	9190	4.5	11.0	7.8	1.2	9225	chr3L	7916819	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926044	3` UTR	syd -	chr3L_11_7920001	chr3L_7920001	RAL-235
1266	chr3L	7985349	7985373	chr3L	7987697	7987721	NOF	8	2348	7.0	3.5	5.2	1.3	2372	chr3L	7985349	intron	nmo +	chr3L	7986535	intron	nmo +	chr3L	7987721	intron	nmo +	chr3L_8_7985001	chr3L_7985001	RAL-235
1267	chr3L	7985374	7985391	chr3L	7987696	7987734	NOF	5	2340	5.0	3.5	4.2	1.0	2360	chr3L	7985374	intron	nmo +	chr3L	7986554	intron	nmo +	chr3L	7987734	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-235
1268	chr3L	8019730	8019735	chr3L	8024115	8024172	NOF	5	4409	1.0	1.0	1.0	2.5	4442	chr3L	8019730	intron	nmo +	chr3L	8021951	intron	nmo +	chr3L	8024172	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RAL-235
1275	chr3L	8498284	8498324	chr3L	8505770	8505811	blood	9	7484	7.5	4.0	5.8	1.3	7527	chr3L	8498284	intron	CG43163 -	chr3L	8502048	intron	CG43163 -	chr3L	8505811	intron	CG43163 -	chr3L_9_8500001	chr3L_8500001	RAL-235
1279	chr3L	8791267	8791298	chr3L	8796702	8796703	I-element	5	5423	4.0	0.0	2.0	1.7	5436	chr3L	8791267	exon	Fhos +	chr3L	8793985	intron	Fhos +	chr3L	8796703	intron	Fhos +	chr3L_5_8790001	chr3L_8790001	RAL-235
1286	chr3L	9076906	9076946	chr3L	9084486	9084514	412	6	7573	4.0	3.0	3.5	1.3	7608	chr3L	9076906	exon	Tequila +	chr3L	9080710	intron	Tequila +	chr3L	9084514	exon	Tequila +	chr3L_6_9080001	chr3L_9080001	RAL-235
1290	chr3L	9164695	9164705	chr3L	9166163	9166179	hobo	5	1474	6.5	0.0	3.2	1.2	1484	chr3L	9164695	intron	Rdl -	chr3L	9165437	intron	Rdl -	chr3L	9166179	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-235
1291	chr3L	9164710	9164720	chr3L	9166162	9166201	hobo	5	1474	4.5	0.0	2.2	1.6	1491	chr3L	9164710	intron	Rdl -	chr3L	9165456	intron	Rdl -	chr3L	9166201	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-235
1292	chr3L	9219246	9219265	chr3L	9219920	9219957	jockey	5	683	4.5	4.5	4.5	0.9	711	chr3L	9219246	intergenic	not near genes	chr3L	9219602	intergenic	not near genes	chr3L	9219957	intergenic	not near genes	chr3L_5_9215001	chr3L_9215001	RAL-235
1301	chr3L	9501687	9501728	chr3L	9502193	9502199	roo	13	501	2.0	3.0	2.5	3.7	512	chr3L	9501687	intron	path -	chr3L	9501943	intron	path -	chr3L	9502199	intron	path -	chr3L_13_9500001	chr3L_9500001	RAL-235
1307	chr3L	9571884	9571932	chr3L	9572252	9572292	jockey	16	366	5.0	2.0	3.5	3.6	408	chr3L	9571884	intron	CG42673 +	chr3L	9572088	intron	CG42673 +	chr3L	9572292	intron	CG42673 +	chr3L_16_9570001	chr3L_9570001	RAL-235
1309	chr3L	9575903	9575943	chr3L	9580991	9581013	jockey	8	5080	4.5	7.5	6.0	1.1	5110	chr3L	9575903	intron	CG42673 +	chr3L	9578458	intron	CG42673 +	chr3L	9581013	intron	CG42673 +	chr3L_8_9575001	chr3L_9575001	RAL-235
1321	chr3L	9929651	9929697	chr3L	9938451	9938482	roo	5	8794	2.0	4.5	3.2	1.2	8831	chr3L	9929651	intron	CG34356 +	chr3L	9934066	intron	CG34356 +	chr3L	9938482	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	RAL-235
1335	chr3L	10414939	10414971	chr3L	10417318	10417356	Doc	11	2386	1.0	4.0	2.5	3.1	2417	chr3L	10414939	intergenic	CG12362 +	chr3L	10416148	intergenic	not near genes	chr3L	10417356	intergenic	not near genes	chr3L_11_10415001	chr3L_10415001	RAL-235
1353	chr3L	11087059	11087085	chr3L	11088860	11088877	S-element	5	1800	4.0	3.5	3.8	1.0	1818	chr3L	11087059	intron	JIL-1 -	chr3L	11087968	intron	JIL-1 -	chr3L	11088877	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	RAL-235
1360	chr3L	11264455	11264476	chr3L	11271424	11271448	17.6	5	6967	2.0	2.0	2.0	1.7	6993	chr3L	11264455	intergenic	not near genes	chr3L	11267952	intergenic	not near genes	chr3L	11271448	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RAL-235
1362	chr3L	11329673	11329716	chr3L	11332892	11332926	jockey	7	3214	5.5	3.5	4.5	1.3	3253	chr3L	11329673	intergenic	not near genes	chr3L	11331300	intergenic	not near genes	chr3L	11332926	intergenic	not near genes	chr3L_7_11330001	chr3L_11330001	RAL-235
1370	chr3L	11723070	11723110	chr3L	11727884	11727924	Doc	16	4810	5.5	7.0	6.2	2.2	4854	chr3L	11723070	3` UTR	Bmcp +	chr3L	11725497	intron	Bmcp +	chr3L	11727924	3` UTR	Bmcp +	chr3L_16_11725001	chr3L_11725001	RAL-235
1380	chr3L	11864552	11864585	chr3L	11865847	11865900	pogo	12	1306	3.0	6.5	4.8	2.1	1348	chr3L	11864552	intron	CG44837 -	chr3L	11865226	intron	CG44837 -	chr3L	11865900	intron	CG44837 -	chr3L_12_11865001	chr3L_11865001	RAL-235
1413	chr3L	12874934	12874962	chr3L	12877226	12877274	jockey	9	2307	1.5	4.5	3.0	2.2	2340	chr3L	12874934	intergenic	not near genes	chr3L	12876104	intergenic	not near genes	chr3L	12877274	intergenic	not near genes	chr3L_9_12875001	chr3L_12875001	RAL-235
1415	chr3L	12919280	12919299	chr3L	12924748	12924767	Rt1c	4	5474	4.5	0.0	2.2	1.2	5487	chr3L	12919280	intergenic	not near genes	chr3L	12922024	intergenic	not near genes	chr3L	12924767	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-235
1416	chr3L	12919304	12919312	chr3L	12924739	12924740	Rt1c	4	5444	2.5	0.0	1.2	1.8	5436	chr3L	12919304	intergenic	not near genes	chr3L	12922022	intergenic	not near genes	chr3L	12924740	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-235
1417	chr3L	12957774	12957815	chr3L	12962275	12962317	copia	15	4497	7.0	6.5	6.8	1.9	4543	chr3L	12957774	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962317	intergenic	not near genes	chr3L_15_12960001	chr3L_12960001	RAL-235
1423	chr3L	13200600	13200612	chr3L	13200702	13200714	INE-1	5	102	5.5	17.0	11.2	0.4	114	chr3L	13200600	intergenic	not near genes	chr3L	13200657	intergenic	not near genes	chr3L	13200714	intergenic	not near genes	chr3L_5_13200001	chr3L_13200001	RAL-235
1430	chr3L	13525144	13525185	chr3L	13532950	13532954	roo	11	7807	6.5	4.5	5.5	1.7	7810	chr3L	13525144	intergenic	not near genes	chr3L	13529049	intergenic	not near genes	chr3L	13532954	intergenic	not near genes	chr3L_11_13525001	chr3L_13525001	RAL-235
1438	chr3L	13804543	13804576	chr3L	13822849	13822867	roo	10	18301	4.0	9.0	6.5	1.3	18324	chr3L	13804543	intergenic	not near genes	chr3L	13813705	intergenic	not near genes	chr3L	13822867	intergenic	not near genes	chr3L_10_13810001	chr3L_13810001	RAL-235
1450	chr3L	14245560	14245581	chr3L	14245668	14245694	1360	6	112	3.5	5.5	4.5	1.1	134	chr3L	14245560	3` UTR	CR44561 -	chr3L	14245627	3` UTR	CR44561 -	chr3L	14245694	intergenic	CR44561 -,CR44560 +	chr3L_6_14245001	chr3L_14245001	RAL-235
1451	chr3L	14245587	14245594	chr3L	14245659	14245681	1360	5	96	3.5	5.5	4.5	0.9	94	chr3L	14245587	3` UTR	CR44561 -	chr3L	14245634	3` UTR	CR44561 -	chr3L	14245681	3` UTR	CR44561 -	chr3L_5_14245001	chr3L_14245001	RAL-235
1452	chr3L	14295970	14295999	chr3L	14296476	14296503	roo	5	503	2.5	9.0	5.8	0.7	533	chr3L	14295970	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296503	intron	fz +	chr3L_5_14295001	chr3L_14295001	RAL-235
1453	chr3L	14296001	14296014	chr3L	14296474	14296495	roo	4	485	1.5	9.0	5.2	0.6	494	chr3L	14296001	intron	fz +	chr3L	14296248	intron	fz +	chr3L	14296495	intron	fz +	chr3L_4_14295001	chr3L_14295001	RAL-235
1458	chr3L	14468430	14468477	chr3L	14473656	14473692	copia	20	5224	4.0	6.0	5.0	3.3	5262	chr3L	14468430	intron	bbg -	chr3L	14471061	intron	bbg -	chr3L	14473692	intron	bbg -	chr3L_20_14470001	chr3L_14470001	RAL-235
1467	chr3L	14725591	14725615	chr3L	14728605	14728614	Doc	4	3010	0.0	9.0	4.5	0.7	3023	chr3L	14725591	intron	ome +	chr3L	14727102	intron	ome +	chr3L	14728614	intron	ome +	chr3L_4_14725001	chr3L_14725001	RAL-235
1476	chr3L	15085028	15085084	chr3L	15086214	15086254	1360	11	1177	2.0	5.5	3.8	2.3	1226	chr3L	15085028	intron	cp309 -	chr3L	15085641	intron	cp309 -	chr3L	15086254	intron	cp309 -	chr3L_11_15085001	chr3L_15085001	RAL-235
1481	chr3L	15295752	15295800	chr3L	15298615	15298663	gypsy5	17	2862	6.5	5.5	6.0	2.4	2911	chr3L	15295752	intergenic	not near genes	chr3L	15297208	intergenic	not near genes	chr3L	15298663	intergenic	Best4 +	chr3L_17_15295001	chr3L_15295001	RAL-235
1488	chr3L	15423743	15423783	chr3L	15426607	15426647	opus	14	2864	4.0	5.0	4.5	2.5	2904	chr3L	15423743	intergenic	not near genes	chr3L	15425195	intergenic	not near genes	chr3L	15426647	intergenic	not near genes	chr3L_14_15425001	chr3L_15425001	RAL-235
1494	chr3L	15554903	15554931	chr3L	15556710	15556738	S-element	10	1805	10.5	9.5	10.0	0.9	1835	chr3L	15554903	intron	AGO2 +	chr3L	15555820	intron	AGO2 +	chr3L	15556738	intron	AGO2 +	chr3L_10_15555001	chr3L_15555001	RAL-235
1495	chr3L	15554935	15554951	chr3L	15556707	15556757	S-element	8	1798	6.0	9.0	7.5	0.9	1822	chr3L	15554935	intron	AGO2 +	chr3L	15555846	intron	AGO2 +	chr3L	15556757	intron	AGO2 +	chr3L_8_15555001	chr3L_15555001	RAL-235
1507	chr3L	15929186	15929224	chr3L	15938353	15938386	roo	17	9166	8.0	7.0	7.5	2.0	9200	chr3L	15929186	intron	Pka-C3 -	chr3L	15933786	intron	Pka-C3 -	chr3L	15938386	intron	Pka-C3 -	chr3L_17_15930001	chr3L_15930001	RAL-235
1512	chr3L	16184094	16184137	chr3L	16188933	16188964	X-element	16	4835	7.0	5.5	6.2	2.2	4870	chr3L	16184094	intergenic	not near genes	chr3L	16186529	intergenic	not near genes	chr3L	16188964	intergenic	not near genes	chr3L_16_16185001	chr3L_16185001	RAL-235
1521	chr3L	16493962	16494012	chr3L	16494497	16494526	jockey	16	526	5.0	6.5	5.8	2.4	564	chr3L	16493962	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494244	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494526	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_16_16490001	chr3L_16490001	RAL-235
1530	chr3L	16616491	16616535	chr3L	16621839	16621882	297	12	5339	5.0	2.0	3.5	2.7	5391	chr3L	16616491	3` UTR	Abl -	chr3L	16619186	3` UTR	Abl -	chr3L	16621882	3` UTR	Abl -	chr3L_12_16615001	chr3L_16615001	RAL-235
1532	chr3L	16684008	16684043	chr3L	16689249	16689284	copia	10	5240	5.5	3.0	4.2	1.9	5276	chr3L	16684008	intron,intron	Lasp -,CG43954 -	chr3L	16686646	intron,intron	Lasp -,CG43954 -	chr3L	16689284	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_10_16685001	chr3L_16685001	RAL-235
1547	chr3L	16945720	16945760	chr3L	16954883	16954888	roo	13	9152	1.5	1.5	1.5	5.2	9168	chr3L	16945720	exon	Obp73a +	chr3L	16950304	intergenic	not near genes	chr3L	16954888	5` UTR	Nc73EF +	chr3L_13_16950001	chr3L_16950001	RAL-235
1550	chr3L	17034918	17034970	chr3L	17035126	17035127	G2	14	204	1.0	4.5	2.8	3.7	209	chr3L	17034918	intergenic	not near genes	chr3L	17035022	intergenic	not near genes	chr3L	17035127	intergenic	not near genes	chr3L_14_17035001	chr3L_17035001	RAL-235
1551	chr3L	17084984	17085029	chr3L	17094153	17094198	roo	16	9168	8.5	7.0	7.8	1.8	9214	chr3L	17084984	intron	Rbp6 -	chr3L	17089591	intron	Rbp6 -	chr3L	17094198	intron	Rbp6 -	chr3L_16_17085001	chr3L_17085001	RAL-235
1555	chr3L	17516974	17517007	chr3L	17524536	17524539	412	5	7559	3.0	2.0	2.5	1.4	7565	chr3L	17516974	intron	CG7564 +	chr3L	17520756	intron	CG7564 +	chr3L	17524539	3` UTR	CG7564 +	chr3L_5_17520001	chr3L_17520001	RAL-235
1561	chr3L	17730834	17730881	chr3L	17738182	17738217	mdg1	15	7345	3.0	3.5	3.2	3.6	7383	chr3L	17730834	intron	Ccn +	chr3L	17734526	intron	Ccn +	chr3L	17738217	intron	Ccn +	chr3L_15_17730001	chr3L_17730001	RAL-235
1563	chr3L	17799799	17799841	chr3L	17801596	17801636	S-element	13	1798	7.0	5.0	6.0	1.9	1837	chr3L	17799799	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801636	intron	NUCB1 -	chr3L_13_17800001	chr3L_17800001	RAL-235
1568	chr3L	17918365	17918403	chr3L	17921173	17921190	opus	7	2815	3.0	2.0	2.5	2.0	2825	chr3L	17918365	intergenic	not near genes	chr3L	17919778	intergenic	not near genes	chr3L	17921190	intergenic	not near genes	chr3L_7_17915001	chr3L_17915001	RAL-235
1571	chr3L	18047702	18047735	chr3L	18056774	18056812	roo	10	9074	5.0	7.0	6.0	1.4	9110	chr3L	18047702	intron	Eip75B -	chr3L	18052257	intron	Eip75B -	chr3L	18056812	intron	Eip75B -	chr3L_10_18050001	chr3L_18050001	RAL-235
1593	chr3L	18506125	18506143	chr3L	18509608	18509623	F-element	5	3482	8.0	9.5	8.8	0.5	3498	chr3L	18506125	intergenic	not near genes	chr3L	18507874	intergenic	not near genes	chr3L	18509623	intergenic	not near genes	chr3L_5_18505001	chr3L_18505001	RAL-235
1594	chr3L	18506151	18506161	chr3L	18509599	18509608	F-element	6	3462	6.0	6.5	6.2	0.8	3457	chr3L	18506151	intergenic	not near genes	chr3L	18507880	intergenic	not near genes	chr3L	18509608	intergenic	not near genes	chr3L_6_18505001	chr3L_18505001	RAL-235
1595	chr3L	18528615	18528652	chr3L	18537790	18537833	roo	12	9179	5.0	6.5	5.8	1.8	9218	chr3L	18528615	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537833	intergenic	not near genes	chr3L_12_18530001	chr3L_18530001	RAL-235
1599	chr3L	18593931	18593977	chr3L	18595931	18595961	Doc	17	1994	4.5	0.5	2.5	4.9	2030	chr3L	18593931	intergenic	term -	chr3L	18594946	intergenic	not near genes	chr3L	18595961	intergenic	CR45389 +	chr3L_17_18590001	chr3L_18590001	RAL-235
1602	chr3L	18710772	18710791	chr3L	18718742	18718761	Stalker2	6	7968	6.5	1.0	3.8	1.2	7989	chr3L	18710772	intergenic	not near genes	chr3L	18714766	intergenic	not near genes	chr3L	18718761	intergenic	not near genes	chr3L_6_18710001	chr3L_18710001	RAL-235
1607	chr3L	18772397	18772428	chr3L	18781088	18781129	roo	15	8697	6.5	1.5	4.0	3.0	8732	chr3L	18772397	intron	ftz-f1 -	chr3L	18776763	intron	ftz-f1 -	chr3L	18781129	intron	ftz-f1 -	chr3L_15_18775001	chr3L_18775001	RAL-235
1620	chr3L	19117032	19117070	chr3L	19124488	19124537	mdg1	9	7459	6.0	4.0	5.0	1.5	7505	chr3L	19117032	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124537	intron	CG14082 -	chr3L_9_19120001	chr3L_19120001	RAL-235
1624	chr3L	19208051	19208090	chr3L	19209435	19209459	Doc	6	1383	4.0	4.5	4.2	1.2	1408	chr3L	19208051	intron	fz2 -	chr3L	19208755	intron	fz2 -	chr3L	19209459	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-235
1637	chr3L	19820283	19820319	chr3L	19827852	19827888	412	15	7567	2.5	4.5	3.5	3.3	7605	chr3L	19820283	intron	Deaf1 +	chr3L	19824086	intron	Deaf1 +	chr3L	19827888	intron	Deaf1 +	chr3L_15_19820001	chr3L_19820001	RAL-235
1638	chr3L	19848484	19848531	chr3L	19857694	19857741	roo	10	9201	8.5	4.0	6.2	1.4	9257	chr3L	19848484	intron	Papss +	chr3L	19853112	intron	Papss +	chr3L	19857741	intron	Papss +	chr3L_10_19850001	chr3L_19850001	RAL-235
1639	chr3L	19861828	19861851	chr3L	19863608	19863659	S-element	6	1803	1.5	4.5	3.0	1.5	1831	chr3L	19861828	5` UTR	CR45433 +	chr3L	19862744	intergenic	not near genes	chr3L	19863659	intergenic	not near genes	chr3L_6_19860001	chr3L_19860001	RAL-235
1643	chr3L	20113640	20113690	chr3L	20122917	20122967	roo	17	9276	8.0	3.0	5.5	2.6	9327	chr3L	20113640	intergenic	not near genes	chr3L	20118304	intergenic	not near genes	chr3L	20122967	intergenic	not near genes	chr3L_17_20115001	chr3L_20115001	RAL-235
1649	chr3L	20257329	20257354	chr3L	20258459	20258491	pogo	10	1134	6.5	9.0	7.8	1.1	1162	chr3L	20257329	intron	rdgC +	chr3L	20257910	intron	rdgC +	chr3L	20258491	intron	rdgC +	chr3L_10_20255001	chr3L_20255001	RAL-235
1650	chr3L	20257357	20257363	chr3L	20258458	20258490	pogo	4	1123	4.0	9.0	6.5	0.5	1133	chr3L	20257357	intron	rdgC +	chr3L	20257924	intron	rdgC +	chr3L	20258490	intron	rdgC +	chr3L_4_20255001	chr3L_20255001	RAL-235
1655	chr3L	20476732	20476781	chr3L	20484351	20484380	springer	16	7614	6.0	4.0	5.0	2.7	7648	chr3L	20476732	3` UTR	isoQC +	chr3L	20480556	intergenic	not near genes	chr3L	20484380	3` UTR	ZnT77C -	chr3L_16_20480001	chr3L_20480001	RAL-235
1666	chr3L	21014902	21014946	chr3L	21023403	21023407	Tirant	7	8486	2.5	2.0	2.2	2.2	8505	chr3L	21014902	intron	skd -	chr3L	21019154	intron	skd -	chr3L	21023407	intron	skd -	chr3L_7_21015001	chr3L_21015001	RAL-235
1669	chr3L	21151853	21151877	chr3L	21156951	21156981	flea	12	5101	6.5	5.5	6.0	1.7	5128	chr3L	21151853	intron	Ac78C -	chr3L	21154417	intron	Ac78C -	chr3L	21156981	intron	Ac78C -	chr3L_12_21150001	chr3L_21150001	RAL-235
1670	chr3L	21151881	21151894	chr3L	21156949	21156996	flea	8	5094	3.5	5.5	4.5	1.5	5115	chr3L	21151881	intron	Ac78C -	chr3L	21154438	intron	Ac78C -	chr3L	21156996	intron	Ac78C -	chr3L_8_21150001	chr3L_21150001	RAL-235
1672	chr3L	21306133	21306179	chr3L	21315312	21315326	roo	16	9169	5.5	3.5	4.5	2.9	9193	chr3L	21306133	3` UTR	CG7632 +	chr3L	21310730	intron	Pc -	chr3L	21315326	3` UTR	Pc -	chr3L_16_21310001	chr3L_21310001	RAL-235
1673	chr3L	21372698	21372726	chr3L	21379226	21379254	McClintock	5	6525	11.5	1.5	6.5	0.7	6556	chr3L	21372698	intergenic	not near genes	chr3L	21375976	intergenic	not near genes	chr3L	21379254	intergenic	not near genes	chr3L_5_21375001	chr3L_21375001	RAL-235
1674	chr3L	21372727	21372750	chr3L	21379245	21379278	McClintock	10	6525	5.0	7.0	6.0	1.4	6551	chr3L	21372727	intergenic	not near genes	chr3L	21376002	intergenic	not near genes	chr3L	21379278	intergenic	not near genes	chr3L_10_21375001	chr3L_21375001	RAL-235
1678	chr3L	21498847	21498862	chr3L	21500477	21500503	1360	4	1642	5.5	4.0	4.8	0.7	1656	chr3L	21498847	intron	Glg1 -	chr3L	21499675	intron	Glg1 -	chr3L	21500503	intron	Glg1 -	chr3L_4_21495001	chr3L_21495001	RAL-235
1680	chr3L	21749330	21749351	chr3L	21754479	21754499	Doc	8	5156	2.0	1.5	1.8	2.9	5169	chr3L	21749330	intron	Syn1 -	chr3L	21751914	intron	Syn1 -	chr3L	21754499	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-235
1684	chr3L	21868332	21868378	chr3L	21868676	21868692	INE-1	10	338	2.5	4.5	3.5	2.2	360	chr3L	21868332	intron	mub +	chr3L	21868512	intron	mub +	chr3L	21868692	intron	mub +	chr3L_10_21865001	chr3L_21865001	RAL-235
1689	chr3L	22099655	22099707	chr3L	22105861	22105867	3S18	17	6199	6.5	6.0	6.2	2.4	6212	chr3L	22099655	intergenic	not near genes	chr3L	22102761	intergenic	not near genes	chr3L	22105867	intergenic	not near genes	chr3L_17_22100001	chr3L_22100001	RAL-235
1694	chr3L	22555770	22555799	chr3L	22563239	22563278	blood	7	7480	2.0	1.5	1.8	2.5	7508	chr3L	22555770	intergenic	not near genes	chr3L	22559524	intergenic	not near genes	chr3L	22563278	intergenic	not near genes	chr3L_7_22555001	chr3L_22555001	RAL-235
1696	chr3L	22617182	22617222	chr3L	22624643	22624675	blood	21	7464	2.5	4.5	3.5	4.7	7493	chr3L	22617182	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624675	intron	CG14459 -	chr3L_21_22620001	chr3L_22620001	RAL-235
1701	chr3L	22761376	22761408	chr3L	22766820	22766862	Ivk	9	5446	7.5	2.0	4.8	1.6	5486	chr3L	22761376	intron	SPoCk +	chr3L	22764119	intron	SPoCk +	chr3L	22766862	intron	SPoCk +	chr3L_9_22760001	chr3L_22760001	RAL-235
1703	chr3L	22865973	22866008	chr3L	22867121	22867161	Doc	13	1152	9.5	8.5	9.0	1.3	1188	chr3L	22865973	intron	CG33170 +	chr3L	22866567	intron	CG33170 +	chr3L	22867161	intron	CG33170 +	chr3L_13_22865001	chr3L_22865001	RAL-235
1707	chr3L	22902393	22902398	chr3L	22909824	22909869	Cr1a	9	7438	12.0	21.5	16.8	0.5	7476	chr3L	22902393	exon	BoYb +	chr3L	22906131	intergenic	not near genes	chr3L	22909869	intergenic	CR45661 +	chr3L_9_22905001	chr3L_22905001	RAL-235
1709	chr3L	22989845	22989849	chr3L	22996839	22996842	297	4	6993	9.5	7.0	8.2	0.4	6997	chr3L	22989845	intergenic	not near genes	chr3L	22993344	intergenic	not near genes	chr3L	22996842	intergenic	not near genes	chr3L_4_22990001	chr3L_22990001	RAL-235
1710	chr3L	22989855	22989887	chr3L	22996838	22996867	297	7	6990	4.0	7.0	5.5	1.1	7012	chr3L	22989855	intergenic	not near genes	chr3L	22993361	intergenic	not near genes	chr3L	22996867	intergenic	not near genes	chr3L_7_22990001	chr3L_22990001	RAL-235
1716	chr3L	24012397	24012406	chr3L	24020755	24020767	roo	4	8360	4.0	6.0	5.0	0.7	8370	chr3L	24012397	intergenic	not near genes	chr3L	24016582	intergenic	not near genes	chr3L	24020767	intergenic	not near genes	chr3L_4_24015001	chr3L_24015001	RAL-235
1717	chr3L	24012408	24012438	chr3L	24020746	24020799	roo	7	8349	1.5	6.0	3.8	1.5	8391	chr3L	24012408	intergenic	not near genes	chr3L	24016604	intergenic	not near genes	chr3L	24020799	intergenic	not near genes	chr3L_7_24015001	chr3L_24015001	RAL-235
1727	chr3R	4206068	4206082	chr3R	4211653	4211672	mdg3	4	5590	13.5	5.5	9.5	0.4	5604	chr3R	4206068	intron	CG14636 -	chr3R	4208870	intron	CG14636 -	chr3R	4211672	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	RAL-235
1728	chr3R	4206085	4206089	chr3R	4211650	4211684	mdg3	6	5582	11.5	4.5	8.0	0.7	5599	chr3R	4206085	intron	CG14636 -	chr3R	4208884	intron	CG14636 -	chr3R	4211684	intron	CG14636 -	chr3R_6_4205001	chr3R_4205001	RAL-235
1729	chr3R	4206091	4206104	chr3R	4211649	4211698	mdg3	8	5581	7.0	4.5	5.8	1.2	5607	chr3R	4206091	intron	CG14636 -	chr3R	4208894	intron	CG14636 -	chr3R	4211698	intron	CG14636 -	chr3R_8_4205001	chr3R_4205001	RAL-235
1730	chr3R	4366748	4366785	chr3R	4375151	4375188	roo	6	8398	6.0	8.0	7.0	0.8	8440	chr3R	4366748	3` UTR	CG1090 +	chr3R	4370968	intergenic	not near genes	chr3R	4375188	5` UTR	CR44922 +	chr3R_6_4370001	chr3R_4370001	RAL-235
1731	chr3R	4408397	4408413	chr3R	4412721	4412722	Juan	7	4319	12.0	10.0	11.0	0.6	4325	chr3R	4408397	intron	CG32944 -	chr3R	4410560	intron	CG32944 -	chr3R	4412722	intron	CG32944 -	chr3R_7_4410001	chr3R_4410001	RAL-235
1732	chr3R	4609540	4609552	chr3R	4610714	4610736	1360	5	1179	11.5	6.5	9.0	0.5	1196	chr3R	4609540	intergenic	not near genes	chr3R	4610138	intergenic	not near genes	chr3R	4610736	intergenic	not near genes	chr3R_5_4610001	chr3R_4610001	RAL-235
1733	chr3R	4609557	4609579	chr3R	4610713	4610760	1360	9	1176	3.5	6.5	5.0	1.5	1203	chr3R	4609557	intergenic	not near genes	chr3R	4610158	intergenic	not near genes	chr3R	4610760	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-235
1737	chr3R	4753252	4753262	chr3R	4757543	4757561	F-element	6	4308	5.0	5.0	5.0	1.0	4309	chr3R	4753252	intron,intron	atms +,CG44098 -	chr3R	4755406	intron,intron	atms +,CG44098 -	chr3R	4757561	intron,exon	atms +,CG44098 -	chr3R_6_4755001	chr3R_4755001	RAL-235
1746	chr3R	5045829	5045875	chr3R	5052946	5052997	HMS-Beagle	23	7121	7.0	3.5	5.2	3.7	7168	chr3R	5045829	3` UTR	CR43635 -	chr3R	5049413	intergenic	not near genes	chr3R	5052997	intergenic	CR45588 -	chr3R_23_5045001	chr3R_5045001	RAL-235
1747	chr3R	5067969	5068009	chr3R	5073505	5073545	mdg3	18	5533	8.5	0.0	4.2	3.5	5576	chr3R	5067969	intergenic	not near genes	chr3R	5070757	intergenic	not near genes	chr3R	5073545	intergenic	not near genes	chr3R_18_5070001	chr3R_5070001	RAL-235
1753	chr3R	5445964	5445992	chr3R	5452423	5452462	Burdock	4	6472	4.5	4.5	4.5	0.7	6498	chr3R	5445964	intron	CG14669 +	chr3R	5449213	intron	CG14669 +	chr3R	5452462	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	RAL-235
1757	chr3R	5746012	5746045	chr3R	5746256	5746306	pogo	13	255	4.0	5.0	4.5	2.4	294	chr3R	5746012	3` UTR	Madm +	chr3R	5746159	3` UTR	Madm +	chr3R	5746306	3` UTR	Madm +	chr3R_13_5745001	chr3R_5745001	RAL-235
1758	chr3R	5747022	5747040	chr3R	5753208	5753246	diver	10	6204	7.5	4.5	6.0	1.4	6224	chr3R	5747022	intergenic	Madm +	chr3R	5750134	intergenic	not near genes	chr3R	5753246	intergenic	CG2091 -	chr3R_10_5750001	chr3R_5750001	RAL-235
1760	chr3R	5809108	5809145	chr3R	5809354	5809386	pogo	13	256	4.5	6.0	5.2	2.1	278	chr3R	5809108	3` UTR	CG11000 +	chr3R	5809247	3` UTR	CG11000 +	chr3R	5809386	3` UTR	CG11000 +	chr3R_13_5805001	chr3R_5805001	RAL-235
1761	chr3R	5822367	5822384	chr3R	5823554	5823571	1360	8	1185	6.5	6.5	6.5	1.1	1204	chr3R	5822367	3` UTR	CG2023 -	chr3R	5822969	3` UTR	CG2023 -	chr3R	5823571	3` UTR	CG2023 -	chr3R_8_5820001	chr3R_5820001	RAL-235
1762	chr3R	5822385	5822409	chr3R	5823552	5823576	1360	13	1176	4.5	6.0	5.2	2.1	1191	chr3R	5822385	3` UTR	CG2023 -	chr3R	5822980	3` UTR	CG2023 -	chr3R	5823576	3` UTR	CG2023 -	chr3R_13_5820001	chr3R_5820001	RAL-235
1765	chr3R	5927543	5927589	chr3R	5927801	5927845	pogo	11	253	2.0	6.0	4.0	2.2	302	chr3R	5927543	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927845	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	RAL-235
1772	chr3R	6015949	6015993	chr3R	6024450	6024452	Tirant	6	8490	1.5	1.0	1.2	2.7	8503	chr3R	6015949	intergenic	not near genes	chr3R	6020200	intergenic	not near genes	chr3R	6024452	intergenic	not near genes	chr3R_6_6020001	chr3R_6020001	RAL-235
1775	chr3R	6175151	6175205	chr3R	6182443	6182497	HMS-Beagle2	21	7289	4.5	6.5	5.5	3.2	7346	chr3R	6175151	intergenic	Osi1 +	chr3R	6178824	intron	CR45194 +	chr3R	6182497	intergenic	CR45194 +	chr3R_21_6175001	chr3R_6175001	RAL-235
1781	chr3R	6510020	6510040	chr3R	6515111	6515130	jockey	8	5096	9.0	6.5	7.8	0.9	5110	chr3R	6510020	intergenic	not near genes	chr3R	6512575	intergenic	not near genes	chr3R	6515130	intergenic	not near genes	chr3R_8_6510001	chr3R_6510001	RAL-235
1782	chr3R	6510041	6510055	chr3R	6515104	6515130	jockey	4	5085	5.5	4.5	5.0	0.7	5089	chr3R	6510041	intergenic	not near genes	chr3R	6512586	intergenic	not near genes	chr3R	6515130	intergenic	not near genes	chr3R_4_6510001	chr3R_6510001	RAL-235
1783	chr3R	6737488	6737527	chr3R	6739284	6739334	Doc	7	1803	1.0	1.0	1.0	3.5	1846	chr3R	6737488	intron	pb -	chr3R	6738411	intron	pb -	chr3R	6739334	intron	pb -	chr3R_7_6735001	chr3R_6735001	RAL-235
1806	chr3R	7729457	7729498	chr3R	7737404	7737441	Stalker2	21	7953	3.5	5.5	4.5	3.8	7984	chr3R	7729457	intergenic	not near genes	chr3R	7733449	intergenic	not near genes	chr3R	7737441	intergenic	not near genes	chr3R_21_7730001	chr3R_7730001	RAL-235
1813	chr3R	7973327	7973349	chr3R	7974378	7974431	1360	12	1080	2.5	3.0	2.8	3.2	1104	chr3R	7973327	intergenic	not near genes	chr3R	7973879	intergenic	not near genes	chr3R	7974431	3` UTR	CD98hc -	chr3R_12_7970001	chr3R_7970001	RAL-235
1814	chr3R	8090565	8090571	chr3R	8094043	8094052	297	5	3486	4.5	9.0	6.8	0.6	3487	chr3R	8090565	intergenic	CR44330 +	chr3R	8092308	intergenic	not near genes	chr3R	8094052	intergenic	CG7900 +	chr3R_5_8090001	chr3R_8090001	RAL-235
1815	chr3R	8094386	8094434	chr3R	8099711	8099759	Transpac	16	5323	3.0	4.5	3.8	3.3	5373	chr3R	8094386	intron	CG7900 +	chr3R	8097072	intron	CG7900 +	chr3R	8099759	intron	CG7900 +	chr3R_16_8095001	chr3R_8095001	RAL-235
1819	chr3R	8403005	8403026	chr3R	8412180	8412202	roo	4	9180	4.5	3.5	4.0	0.8	9197	chr3R	8403005	intron	CG45263 -	chr3R	8407604	intron	CG45263 -	chr3R	8412202	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-235
1820	chr3R	8403029	8403037	chr3R	8412178	8412198	roo	5	9160	4.0	3.0	3.5	1.1	9169	chr3R	8403029	intron	CG45263 -	chr3R	8407614	intron	CG45263 -	chr3R	8412198	intron	CG45263 -	chr3R_5_8405001	chr3R_8405001	RAL-235
1823	chr3R	8570477	8570508	chr3R	8575114	8575162	HMS-Beagle	6	4650	4.5	4.5	4.5	1.1	4685	chr3R	8570477	intergenic	not near genes	chr3R	8572820	intergenic	not near genes	chr3R	8575162	intergenic	not near genes	chr3R_6_8570001	chr3R_8570001	RAL-235
1824	chr3R	8601769	8601797	chr3R	8610924	8610970	roo	8	9170	4.5	3.5	4.0	1.6	9201	chr3R	8601769	intron	5-HT2B +	chr3R	8606370	intron	5-HT2B +	chr3R	8610970	intron	5-HT2B +	chr3R_8_8605001	chr3R_8605001	RAL-235
1826	chr3R	8707367	8707388	chr3R	8709828	8709829	jockey	4	2453	1.5	9.0	5.2	0.6	2462	chr3R	8707367	intergenic	not near genes	chr3R	8708598	intergenic	not near genes	chr3R	8709829	intergenic	not near genes	chr3R_4_8705001	chr3R_8705001	RAL-235
1844	chr3R	9278785	9278807	chr3R	9284039	9284075	Rt1a	7	5271	2.5	3.5	3.0	1.8	5290	chr3R	9278785	intergenic	not near genes	chr3R	9281430	intergenic	not near genes	chr3R	9284075	intergenic	not near genes	chr3R_7_9280001	chr3R_9280001	RAL-235
1847	chr3R	9319556	9319602	chr3R	9320011	9320057	jockey	14	454	7.0	4.5	5.8	2.1	501	chr3R	9319556	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320057	intron	CG8861 -	chr3R_14_9315001	chr3R_9315001	RAL-235
1848	chr3R	9361804	9361846	chr3R	9362065	9362093	pogo	15	256	3.0	5.0	4.0	3.0	289	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361948	3` UTR	CG45050 +	chr3R	9362093	3` UTR	CG45050 +	chr3R_15_9360001	chr3R_9360001	RAL-235
1862	chr3R	10231762	10231814	chr3R	10237359	10237382	mdg3	15	5591	3.5	6.0	4.8	2.6	5620	chr3R	10231762	intron	CG42795 +	chr3R	10234572	intron	CG42795 +	chr3R	10237382	intron	CG42795 +	chr3R_15_10230001	chr3R_10230001	RAL-235
1863	chr3R	10255359	10255384	chr3R	10260819	10260839	I-element	8	5459	10.0	5.0	7.5	0.9	5480	chr3R	10255359	3` UTR	Sirt6 -	chr3R	10258099	intron	Sirt6 -	chr3R	10260839	exon	Sirt6 -	chr3R_8_10255001	chr3R_10255001	RAL-235
1873	chr3R	10804152	10804208	chr3R	10811703	10811760	17.6	11	7550	2.5	3.0	2.8	2.9	7608	chr3R	10804152	intergenic	CG14692 -	chr3R	10807956	intergenic	not near genes	chr3R	10811760	3` UTR	CG14693 -	chr3R_11_10805001	chr3R_10805001	RAL-235
1889	chr3R	11379221	11379248	chr3R	11388390	11388423	roo	9	9169	8.0	3.5	5.8	1.3	9202	chr3R	11379221	intron	pros +	chr3R	11383822	intron	pros +	chr3R	11388423	intron	pros +	chr3R_9_11380001	chr3R_11380001	RAL-235
1899	chr3R	11841049	11841100	chr3R	11846252	11846267	BS	13	5200	2.5	8.0	5.2	2.1	5218	chr3R	11841049	intron	CG6959 -	chr3R	11843658	intron	CG6959 -	chr3R	11846267	intron	CG6959 -	chr3R_13_11840001	chr3R_11840001	RAL-235
1900	chr3R	11957836	11957875	chr3R	11958139	11958163	S-element	9	296	4.5	0.0	2.2	2.8	327	chr3R	11957836	intergenic	not near genes	chr3R	11958000	intergenic	not near genes	chr3R	11958163	intergenic	not near genes	chr3R_9_11955001	chr3R_11955001	RAL-235
1902	chr3R	12022875	12022916	chr3R	12025067	12025102	pogo	9	2192	5.5	4.0	4.8	1.6	2227	chr3R	12022875	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025102	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	RAL-235
1911	chr3R	12780292	12780300	chr3R	12780418	12780432	BS	5	127	4.0	0.0	2.0	1.7	140	chr3R	12780292	intron	beat-Vc -	chr3R	12780362	intron	beat-Vc -	chr3R	12780432	intron	beat-Vc -	chr3R_5_12780001	chr3R_12780001	RAL-235
1915	chr3R	12920159	12920176	chr3R	12925372	12925399	copia	4	5213	3.0	4.5	3.8	0.8	5240	chr3R	12920159	intron	beat-Vb +	chr3R	12922779	intron	beat-Vb +	chr3R	12925399	intron	beat-Vb +	chr3R_4_12920001	chr3R_12920001	RAL-235
1921	chr3R	13135819	13135832	chr3R	13138004	13138017	pogo	5	2182	6.0	3.0	4.5	0.9	2198	chr3R	13135819	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136918	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138017	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13135001	chr3R_13135001	RAL-235
1922	chr3R	13143041	13143065	chr3R	13148625	13148661	mdg3	9	5582	3.0	5.0	4.0	1.8	5620	chr3R	13143041	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145851	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148661	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13145001	chr3R_13145001	RAL-235
1929	chr3R	13517224	13517236	chr3R	13520053	13520065	jockey	6	2832	3.5	3.5	3.5	1.3	2841	chr3R	13517224	intergenic	not near genes	chr3R	13518644	intergenic	not near genes	chr3R	13520065	intergenic	not near genes	chr3R_6_13515001	chr3R_13515001	RAL-235
1941	chr3R	14021627	14021661	chr3R	14023472	14023506	S-element	15	1842	5.5	3.5	4.5	2.7	1879	chr3R	14021627	intron	rdx -	chr3R	14022566	intron	rdx -	chr3R	14023506	intron	rdx -	chr3R_15_14020001	chr3R_14020001	RAL-235
1948	chr3R	14180806	14180836	chr3R	14185576	14185620	F-element	11	4779	6.5	8.0	7.2	1.3	4814	chr3R	14180806	intron	Dop1R1 -	chr3R	14183213	intron	Dop1R1 -	chr3R	14185620	intron	Dop1R1 -	chr3R_11_14180001	chr3R_14180001	RAL-235
1949	chr3R	14194433	14194461	chr3R	14203578	14203627	roo	11	9157	5.5	6.5	6.0	1.6	9194	chr3R	14194433	intron	Dop1R1 -	chr3R	14199030	intron	Dop1R1 -	chr3R	14203627	intron	Dop1R1 -	chr3R_11_14195001	chr3R_14195001	RAL-235
1965	chr3R	15041403	15041418	chr3R	15045207	15045222	Doc	4	3802	0.0	4.0	2.0	1.3	3819	chr3R	15041403	intergenic	not near genes	chr3R	15043312	intergenic	not near genes	chr3R	15045222	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	RAL-235
1967	chr3R	15079786	15079830	chr3R	15080047	15080091	pogo	17	257	3.0	1.5	2.2	5.3	305	chr3R	15079786	3` UTR	CG6966 -	chr3R	15079938	3` UTR	CG6966 -	chr3R	15080091	3` UTR	CG6966 -	chr3R_17_15075001	chr3R_15075001	RAL-235
1969	chr3R	15102479	15102529	chr3R	15109756	15109786	412	19	7274	6.0	4.0	5.0	3.2	7307	chr3R	15102479	intron	CG42788 -	chr3R	15106132	intron	CG42788 -	chr3R	15109786	intron	CG42788 -	chr3R_19_15105001	chr3R_15105001	RAL-235
1971	chr3R	15132041	15132048	chr3R	15135121	15135128	Juan	6	3080	10.5	6.0	8.2	0.7	3087	chr3R	15132041	intergenic	CG42788 -	chr3R	15133584	intergenic	not near genes	chr3R	15135128	intergenic	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-235
1972	chr3R	15162523	15162548	chr3R	15167311	15167336	F-element	8	4788	9.0	2.5	5.8	1.2	4813	chr3R	15162523	intron	Gyc88E +	chr3R	15164930	intron	Gyc88E +	chr3R	15167336	intron	Gyc88E +	chr3R_8_15160001	chr3R_15160001	RAL-235
1976	chr3R	15601153	15601192	chr3R	15608690	15608733	412	9	7536	4.5	5.5	5.0	1.5	7580	chr3R	15601153	intergenic	not near genes	chr3R	15604943	intergenic	not near genes	chr3R	15608733	intergenic	not near genes	chr3R_9_15600001	chr3R_15600001	RAL-235
1982	chr3R	15735224	15735236	chr3R	15739963	15739976	F-element	5	4740	4.0	4.5	4.2	1.0	4752	chr3R	15735224	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739976	intergenic	not near genes	chr3R_5_15735001	chr3R_15735001	RAL-235
1985	chr3R	16189390	16189435	chr3R	16189811	16189811	invader4	13	415	5.0	7.0	6.0	1.9	421	chr3R	16189390	intron	sra +	chr3R	16189600	intron	sra +	chr3R	16189811	intron	sra +	chr3R_13_16185001	chr3R_16185001	RAL-235
1992	chr3R	16756310	16756352	chr3R	16762511	16762532	diver	4	6199	4.5	1.5	3.0	1.0	6222	chr3R	16756310	intron	bxd -	chr3R	16759421	intron	bxd -	chr3R	16762532	intron	bxd -	chr3R_4_16755001	chr3R_16755001	RAL-235
2001	chr3R	17294653	17294703	chr3R	17295101	17295152	BS	4	446	1.5	0.0	0.8	2.2	499	chr3R	17294653	intergenic	not near genes	chr3R	17294902	intergenic	not near genes	chr3R	17295152	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-235
2002	chr3R	17346678	17346706	chr3R	17348259	17348289	F-element	11	1581	5.5	6.5	6.0	1.6	1611	chr3R	17346678	intron	beat-IIa -	chr3R	17347484	intron	beat-IIa -	chr3R	17348289	intron	beat-IIa -	chr3R_11_17345001	chr3R_17345001	RAL-235
2003	chr3R	17346709	17346718	chr3R	17348257	17348275	F-element	6	1573	4.0	6.5	5.2	1.0	1566	chr3R	17346709	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348275	intron	beat-IIa -	chr3R_6_17345001	chr3R_17345001	RAL-235
2024	chr3R	17925852	17925885	chr3R	17927317	17927339	hobo	6	1468	2.5	3.0	2.8	1.6	1487	chr3R	17925852	intron	cpo +	chr3R	17926596	intron	cpo +	chr3R	17927339	intron	cpo +	chr3R_6_17925001	chr3R_17925001	RAL-235
2033	chr3R	18331761	18331784	chr3R	18333275	18333277	hopper2	5	1508	11.5	3.5	7.5	0.6	1516	chr3R	18331761	3` UTR	CG15803 -	chr3R	18332519	intron	CG15803 -	chr3R	18333277	3` UTR	CG15803 -	chr3R_5_18330001	chr3R_18330001	RAL-235
2039	chr3R	18606482	18606532	chr3R	18610735	18610784	F-element	15	4250	4.0	8.5	6.2	2.1	4302	chr3R	18606482	intron,intron	qin +,CG14304 -	chr3R	18608633	intron,intron	qin +,CG14304 -	chr3R	18610784	intron,intron	qin +,CG14304 -	chr3R_15_18605001	chr3R_18605001	RAL-235
2080	chr3R	20109547	20109562	chr3R	20114753	20114783	copia	6	5221	3.0	4.5	3.8	1.2	5236	chr3R	20109547	intergenic	not near genes	chr3R	20112165	intergenic	not near genes	chr3R	20114783	intergenic	CG10887 +	chr3R_6_20110001	chr3R_20110001	RAL-235
2081	chr3R	20156679	20156706	chr3R	20165869	20165890	roo	11	9187	2.5	6.5	4.5	2.0	9211	chr3R	20156679	intergenic	not near genes	chr3R	20161284	intergenic	not near genes	chr3R	20165890	intergenic	not near genes	chr3R_11_20160001	chr3R_20160001	RAL-235
2082	chr3R	20156709	20156716	chr3R	20165864	20165906	roo	4	9181	2.0	6.5	4.2	0.8	9197	chr3R	20156709	intergenic	not near genes	chr3R	20161308	intergenic	not near genes	chr3R	20165906	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-235
2085	chr3R	20245263	20245305	chr3R	20248893	20248932	F-element	12	3626	7.5	5.5	6.5	1.6	3669	chr3R	20245263	3` UTR	Nlg4 +	chr3R	20247098	intergenic	not near genes	chr3R	20248932	intergenic	not near genes	chr3R_12_20245001	chr3R_20245001	RAL-235
2089	chr3R	20266503	20266546	chr3R	20272994	20273032	Burdock	15	6489	5.5	6.5	6.0	2.1	6529	chr3R	20266503	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273032	intron	cic +	chr3R_15_20265001	chr3R_20265001	RAL-235
2092	chr3R	20330980	20331027	chr3R	20331483	20331533	roo	20	503	3.0	5.5	4.2	3.8	553	chr3R	20330980	intergenic	Sirt2 +	chr3R	20331256	intergenic	Sirt2 +	chr3R	20331533	intergenic	not near genes	chr3R_20_20330001	chr3R_20330001	RAL-235
2096	chr3R	20512994	20513035	chr3R	20515707	20515758	opus	15	2720	5.5	5.0	5.2	2.4	2764	chr3R	20512994	intergenic	not near genes	chr3R	20514376	intergenic	not near genes	chr3R	20515758	intergenic	not near genes	chr3R_15_20510001	chr3R_20510001	RAL-235
2106	chr3R	20854494	20854518	chr3R	20859274	20859293	Doc	6	4775	7.5	4.0	5.8	0.9	4799	chr3R	20854494	intron	Ir93a -	chr3R	20856894	intron	Ir93a -	chr3R	20859293	exon	Ir93a -	chr3R_6_20855001	chr3R_20855001	RAL-235
2133	chr3R	22239475	22239522	chr3R	22248555	22248555	roo	8	9069	6.5	0.0	3.2	1.9	9080	chr3R	22239475	intron	SKIP +	chr3R	22244015	intron	SKIP +	chr3R	22248555	intron	SKIP +	chr3R_8_22240001	chr3R_22240001	RAL-235
2136	chr3R	22450533	22450575	chr3R	22453193	22453235	NOF	5	2652	4.5	6.0	5.2	0.8	2702	chr3R	22450533	intron	CG34376 +	chr3R	22451884	intron	CG34376 +	chr3R	22453235	intron	CG34376 +	chr3R_5_22450001	chr3R_22450001	RAL-235
2155	chr3R	23558380	23558427	chr3R	23560181	23560214	Bari1	10	1799	2.0	3.0	2.5	2.9	1834	chr3R	23558380	intron	beat-IV +	chr3R	23559297	intron	beat-IV +	chr3R	23560214	intron	beat-IV +	chr3R_10_23555001	chr3R_23555001	RAL-235
2159	chr3R	23851067	23851089	chr3R	23858754	23858756	opus	12	7685	4.5	11.5	8.0	1.3	7689	chr3R	23851067	3` UTR	CG34355 +	chr3R	23854912	intergenic	not near genes	chr3R	23858756	intergenic	not near genes	chr3R_12_23850001	chr3R_23850001	RAL-235
2165	chr3R	24072075	24072091	chr3R	24072527	24072536	jockey	4	450	6.5	6.5	6.5	0.5	461	chr3R	24072075	intron	4EHP -	chr3R	24072306	intron	4EHP -	chr3R	24072536	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-235
2166	chr3R	24072093	24072119	chr3R	24072525	24072559	jockey	4	434	2.0	6.5	4.2	0.8	466	chr3R	24072093	intron	4EHP -	chr3R	24072326	intron	4EHP -	chr3R	24072559	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-235
2167	chr3R	24076912	24076934	chr3R	24078383	24078416	hobo	4	1476	4.5	3.0	3.8	0.8	1504	chr3R	24076912	intron	4EHP -	chr3R	24077664	intron	4EHP -	chr3R	24078416	intron	4EHP -	chr3R_4_24075001	chr3R_24075001	RAL-235
2169	chr3R	24207213	24207245	chr3R	24212294	24212323	flea	13	5087	4.0	7.5	5.8	1.9	5110	chr3R	24207213	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212323	intron	twin -	chr3R_13_24205001	chr3R_24205001	RAL-235
2171	chr3R	24493266	24493287	chr3R	24493505	24493521	BS	9	242	9.0	6.5	7.8	1.0	255	chr3R	24493266	intergenic	not near genes	chr3R	24493394	intergenic	not near genes	chr3R	24493521	intergenic	not near genes	chr3R_9_24490001	chr3R_24490001	RAL-235
2172	chr3R	24493288	24493305	chr3R	24493502	24493553	BS	5	238	5.5	6.5	6.0	0.7	265	chr3R	24493288	intergenic	not near genes	chr3R	24493420	intergenic	not near genes	chr3R	24493553	intergenic	not near genes	chr3R_5_24490001	chr3R_24490001	RAL-235
2180	chr3R	24927112	24927148	chr3R	24931923	24931954	Doc	11	4808	9.0	4.0	6.5	1.5	4842	chr3R	24927112	intergenic	Trf4-2 +	chr3R	24929533	intergenic	not near genes	chr3R	24931954	intergenic	CG11771 +	chr3R_11_24925001	chr3R_24925001	RAL-235
2193	chr3R	25725812	25725836	chr3R	25734990	25735016	roo	7	9178	5.0	5.5	5.2	1.1	9204	chr3R	25725812	intron	LpR2 -	chr3R	25730414	intron	LpR2 -	chr3R	25735016	intron	LpR2 -	chr3R_7_25730001	chr3R_25730001	RAL-235
2208	chr3R	26376309	26376358	chr3R	26385488	26385496	roo	10	9170	2.0	1.0	1.5	4.0	9187	chr3R	26376309	intergenic	not near genes	chr3R	26380902	intergenic	not near genes	chr3R	26385496	intergenic	not near genes	chr3R_10_26380001	chr3R_26380001	RAL-235
2210	chr3R	26510486	26510535	chr3R	26519567	26519581	roo	17	9077	5.5	7.5	6.5	2.3	9095	chr3R	26510486	intron	plum -	chr3R	26515034	intron	plum -	chr3R	26519581	intron,5` UTR	plum -,CR45226 +	chr3R_17_26515001	chr3R_26515001	RAL-235
2212	chr3R	26558308	26558361	chr3R	26565638	26565675	Stalker4	6	7314	1.0	2.0	1.5	2.4	7367	chr3R	26558308	intron	scrib +	chr3R	26561992	intron	scrib +	chr3R	26565675	intron	scrib +	chr3R_6_26560001	chr3R_26560001	RAL-235
2213	chr3R	26642709	26642759	chr3R	26643122	26643166	jockey	10	409	3.5	6.5	5.0	1.7	457	chr3R	26642709	intergenic	not near genes	chr3R	26642938	intergenic	not near genes	chr3R	26643166	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	RAL-235
2216	chr3R	26810555	26810586	chr3R	26811040	26811082	roo	9	498	3.0	6.5	4.8	1.6	527	chr3R	26810555	intron	Tl +	chr3R	26810818	intron	Tl +	chr3R	26811082	intron	Tl +	chr3R_9_26810001	chr3R_26810001	RAL-235
2217	chr3R	27007408	27007432	chr3R	27016548	27016552	roo	8	9141	5.5	5.0	5.2	1.3	9144	chr3R	27007408	intron	RYa-R +	chr3R	27011980	intron	RYa-R +	chr3R	27016552	intron	RYa-R +	chr3R_8_27010001	chr3R_27010001	RAL-235
2223	chr3R	27140499	27140544	chr3R	27148123	27148174	412	22	7622	2.5	4.5	3.5	4.9	7675	chr3R	27140499	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148174	intron	CG6051 -	chr3R_22_27140001	chr3R_27140001	RAL-235
2226	chr3R	27342773	27342822	chr3R	27351374	27351423	Tirant	12	8600	2.0	8.5	5.2	1.9	8650	chr3R	27342773	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351423	intron	CG42534 +	chr3R_12_27345001	chr3R_27345001	RAL-235
2229	chr3R	27521137	27521185	chr3R	27530366	27530414	roo	19	9228	4.0	7.0	5.5	2.9	9277	chr3R	27521137	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530414	intron	CG12885 +	chr3R_19_27525001	chr3R_27525001	RAL-235
2233	chr3R	27725552	27725595	chr3R	27731014	27731047	I-element	18	5458	2.0	1.0	1.5	7.2	5495	chr3R	27725552	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731047	intergenic	not near genes	chr3R_18_27725001	chr3R_27725001	RAL-235
2235	chr3R	27856745	27856791	chr3R	27858242	27858280	hopper2	9	1501	1.5	4.0	2.8	2.4	1535	chr3R	27856745	intron	CG34353 -	chr3R	27857512	intron	CG34353 -	chr3R	27858280	intron	CG34353 -	chr3R_9_27855001	chr3R_27855001	RAL-235
2236	chr3R	27862947	27862986	chr3R	27868260	27868261	Transpac	12	5308	1.5	4.5	3.0	3.0	5314	chr3R	27862947	intron	CG34353 -	chr3R	27865604	intron	CG34353 -	chr3R	27868261	intron	CG34353 -	chr3R_12_27865001	chr3R_27865001	RAL-235
2237	chr3R	27875682	27875727	chr3R	27882755	27882800	297	11	7074	6.5	7.5	7.0	1.4	7118	chr3R	27875682	intron	CG34353 -	chr3R	27879241	intron	CG34353 -	chr3R	27882800	intron	CG34353 -	chr3R_11_27875001	chr3R_27875001	RAL-235
2239	chr3R	28068476	28068527	chr3R	28073938	28073949	I-element	10	5454	5.0	3.5	4.2	1.9	5473	chr3R	28068476	intron	CG34362 +	chr3R	28071212	intron	CG34362 +	chr3R	28073949	intron	CG34362 +	chr3R_10_28070001	chr3R_28070001	RAL-235
2240	chr3R	28173660	28173702	chr3R	28181110	28181151	mdg1	19	7445	3.5	3.5	3.5	4.2	7491	chr3R	28173660	intron	CG34354 +	chr3R	28177406	intron	CG34354 +	chr3R	28181151	intron	CG34354 +	chr3R_19_28175001	chr3R_28175001	RAL-235
2241	chr3R	28253327	28253362	chr3R	28255855	28255875	jockey	6	2522	1.5	6.5	4.0	1.2	2548	chr3R	28253327	intergenic	not near genes	chr3R	28254601	intergenic	not near genes	chr3R	28255875	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-235
2243	chr3R	28302086	28302132	chr3R	28302544	28302574	jockey	16	456	3.5	3.5	3.5	3.6	488	chr3R	28302086	intergenic	not near genes	chr3R	28302330	intergenic	not near genes	chr3R	28302574	intergenic	not near genes	chr3R_16_28300001	chr3R_28300001	RAL-235
2260	chr3R	28758264	28758281	chr3R	28763901	28763918	roo	6	5637	11.5	0.5	6.0	0.9	5654	chr3R	28758264	intergenic	aqrs -	chr3R	28761091	intergenic	not near genes	chr3R	28763918	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	RAL-235
2261	chr3R	28758302	28758315	chr3R	28771329	28771337	Stalker4	4	13026	4.5	2.5	3.5	0.9	13035	chr3R	28758302	intergenic	aqrs -	chr3R	28764820	intergenic	not near genes	chr3R	28771337	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-235
2262	chr3R	28763901	28763915	chr3R	28771363	28771366	Stalker4	4	7459	0.0	8.5	4.2	0.8	7465	chr3R	28763901	intergenic	not near genes	chr3R	28767634	intergenic	not near genes	chr3R	28771366	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	RAL-235
2269	chr3R	29079389	29079398	chr3R	29080777	29080780	NOF	4	1387	9.0	0.0	4.5	0.7	1391	chr3R	29079389	intron	CG11873 +	chr3R	29080084	intron	CG11873 +	chr3R	29080780	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-235
2275	chr3R	29319817	29319825	chr3R	29320156	29320164	jockey	5	339	1.0	5.0	3.0	1.2	347	chr3R	29319817	intergenic	Cnx99A -	chr3R	29319990	intergenic	Cnx99A -	chr3R	29320164	intergenic	not near genes	chr3R_5_29315001	chr3R_29315001	RAL-235
2276	chr3R	29319826	29319858	chr3R	29320152	29320161	jockey	8	331	0.5	4.0	2.2	2.5	335	chr3R	29319826	intergenic	Cnx99A -	chr3R	29319994	intergenic	Cnx99A -	chr3R	29320161	intergenic	not near genes	chr3R_8_29315001	chr3R_29315001	RAL-235
2292	chr3R	29738249	29738284	chr3R	29739736	29739771	hobo	11	1484	5.0	6.5	5.8	1.6	1522	chr3R	29738249	intergenic	CG1969 +,CG7598 +	chr3R	29739010	intron	CG1969 +	chr3R	29739771	5` UTR	CG1969 +	chr3R_11_29735001	chr3R_29735001	RAL-235
2295	chr3R	29760341	29760390	chr3R	29761562	29761611	pogo	15	1217	8.5	4.5	6.5	2.0	1270	chr3R	29760341	intergenic	not near genes	chr3R	29760976	intergenic	not near genes	chr3R	29761611	intergenic	not near genes	chr3R_15_29760001	chr3R_29760001	RAL-235
2298	chr3R	29882004	29882017	chr3R	29891181	29891194	roo	6	9176	9.0	3.0	6.0	0.9	9190	chr3R	29882004	intron	CG31038 +	chr3R	29886599	intron	CG31038 +	chr3R	29891194	intron	CG31038 +	chr3R_6_29885001	chr3R_29885001	RAL-235
2299	chr3R	29882020	29882053	chr3R	29891180	29891224	roo	8	9169	6.0	3.0	4.5	1.5	9204	chr3R	29882020	intron	CG31038 +	chr3R	29886622	intron	CG31038 +	chr3R	29891224	intron	CG31038 +	chr3R_8_29885001	chr3R_29885001	RAL-235
2302	chr3R	30084840	30084862	chr3R	30086327	30086349	hobo	8	1486	5.5	4.0	4.8	1.4	1509	chr3R	30084840	intron	sima +	chr3R	30085594	intron	sima +	chr3R	30086349	intron	sima +	chr3R_8_30085001	chr3R_30085001	RAL-235
2306	chr3R	30238747	30238783	chr3R	30239942	30239957	1360	7	1189	3.0	5.5	4.2	1.3	1210	chr3R	30238747	intergenic	not near genes	chr3R	30239352	intergenic	not near genes	chr3R	30239957	intergenic	not near genes	chr3R_7_30235001	chr3R_30235001	RAL-235
2308	chr3R	30317310	30317359	chr3R	30324919	30324971	roo	4	7609	0.0	1.5	0.8	2.2	7661	chr3R	30317310	intron	hdc +	chr3R	30321140	intron	hdc +	chr3R	30324971	intron	hdc +	chr3R_4_30320001	chr3R_30320001	RAL-235
2310	chr3R	30375531	30375566	chr3R	30383174	30383199	412	4	7640	3.5	3.0	3.2	1.0	7668	chr3R	30375531	intergenic	not near genes	chr3R	30379365	intergenic	not near genes	chr3R	30383199	intergenic	not near genes	chr3R_4_30375001	chr3R_30375001	RAL-235
2311	chr3R	30396223	30396242	chr3R	30404483	30404523	roo	9	8278	7.0	5.0	6.0	1.3	8300	chr3R	30396223	intergenic	not near genes	chr3R	30400373	intergenic	not near genes	chr3R	30404523	5` UTR	CR45570 +	chr3R_9_30400001	chr3R_30400001	RAL-235
2314	chr3R	30480455	30480505	chr3R	30482943	30482993	jockey	5	2487	2.0	5.0	3.5	1.1	2538	chr3R	30480455	intron	PH4alphaEFB +	chr3R	30481724	intron	PH4alphaEFB +	chr3R	30482993	intron	PH4alphaEFB +	chr3R_5_30480001	chr3R_30480001	RAL-235
2320	chr3R	30679501	30679551	chr3R	30686989	30687030	blood	11	7485	1.0	4.5	2.8	2.9	7529	chr3R	30679501	intergenic	not near genes	chr3R	30683266	intergenic	not near genes	chr3R	30687030	intergenic	not near genes	chr3R_11_30680001	chr3R_30680001	RAL-235
2323	chr3R	30818797	30818844	chr3R	30820382	30820411	1360	8	1580	4.0	5.5	4.8	1.4	1614	chr3R	30818797	intron	cindr +	chr3R	30819604	intron	cindr +	chr3R	30820411	intron	cindr +	chr3R_8_30815001	chr3R_30815001	RAL-235
2328	chr3R	31074215	31074249	chr3R	31081833	31081867	springer	7	7614	5.0	1.0	3.0	1.8	7652	chr3R	31074215	intron	Sox100B +	chr3R	31078041	intron	Sox100B +	chr3R	31081867	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	RAL-235
2333	chr3R	31279365	31279394	chr3R	31285576	31285594	diver	4	6206	8.0	3.0	5.5	0.6	6229	chr3R	31279365	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_4_31280001	chr3R_31280001	RAL-235
2336	chr3R	31413076	31413118	chr3R	31418294	31418310	copia	8	5203	1.5	4.0	2.8	2.1	5234	chr3R	31413076	intron	Gprk2 +	chr3R	31415693	intron	Gprk2 +	chr3R	31418310	intron	Gprk2 +	chr3R_8_31415001	chr3R_31415001	RAL-235
2346	chr3R	31691527	31691563	chr3R	31696298	31696344	Doc	12	4781	2.0	4.5	3.2	2.9	4817	chr3R	31691527	intergenic	not near genes	chr3R	31693936	intergenic	not near genes	chr3R	31696344	intergenic	not near genes	chr3R_12_31690001	chr3R_31690001	RAL-235
2354	chr3R	31997980	31998025	chr3R	32005470	32005513	blood	11	7487	1.5	2.0	1.8	3.9	7533	chr3R	31997980	intron	heph -	chr3R	32001746	intron	heph -	chr3R	32005513	intron	heph -	chr3R_11_32000001	chr3R_32000001	RAL-235
2357	chr4	76488	76517	chr4	81951	81969	I-element	9	5456	2.5	4.5	3.5	2.0	5481	chr4	76488	intron	pan +	chr4	79228	intron	pan +	chr4	81969	intron	pan +	chr4_9_75001	chr4_75001	RAL-235
2358	chr4	319971	320020	chr4	328167	328216	Stalker2	11	8188	4.5	6.5	5.5	1.7	8245	chr4	319971	3` UTR	CG32850 +	chr4	324094	intron	CG32850 +	chr4	328216	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_11_320001	chr4_320001	RAL-235
2359	chr4	671587	671636	chr4	680190	680209	Tirant	11	8594	2.5	5.0	3.8	2.3	8622	chr4	671587	intron	CG11360 +	chr4	675898	intron	CG11360 +	chr4	680209	intron	CG11360 +	chr4_11_675001	chr4_675001	RAL-235
2361	chrX	295856	295880	chrX	303485	303519	412	8	7632	2.5	4.5	3.5	1.8	7663	chrX	295856	intron	CG3777 +	chrX	299688	intron	CG3777 +	chrX	303519	intron	CG3777 +	chrX_8_295001	chrX_295001	RAL-235
2362	chrX	318458	318500	chrX	323559	323574	flea	13	5097	6.0	5.0	5.5	2.0	5116	chrX	318458	intron,intron	CG3777 +,CG32816 -	chrX	321016	intron,intron	CG3777 +,CG32816 -	chrX	323574	intron,intron	CG3777 +,CG32816 -	chrX_13_320001	chrX_320001	RAL-235
2363	chrX	428422	428452	chrX	434614	434653	3S18	7	6202	4.5	4.5	4.5	1.3	6231	chrX	428422	intron	CG32816 -	chrX	431538	intron	CG32816 -	chrX	434653	intron	CG32816 -	chrX_7_430001	chrX_430001	RAL-235
2372	chrX	827588	827628	chrX	835393	835455	roo	4	7809	2.5	0.0	1.2	1.8	7867	chrX	827588	intron	CG43867 -	chrX	831522	intron	CG43867 -	chrX	835455	intron	CG43867 -	chrX_4_830001	chrX_830001	RAL-235
2373	chrX	906698	906732	chrX	908507	908523	S-element	8	1804	2.0	4.0	3.0	2.0	1825	chrX	906698	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908523	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-235
2376	chrX	1357760	1357796	chrX	1367949	1367984	Doc	6	10185	5.0	2.0	3.5	1.3	10224	chrX	1357760	intergenic	png -	chrX	1362872	intergenic	not near genes	chrX	1367984	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-235
2377	chrX	1518022	1518066	chrX	1523444	1523488	jockey	7	5419	0.5	3.0	1.8	2.5	5466	chrX	1518022	intergenic	inc +	chrX	1520755	intergenic	not near genes	chrX	1523488	intergenic	not near genes	chrX_7_1520001	chrX_1520001	RAL-235
2378	chrX	1930532	1930568	chrX	1938109	1938156	opus	9	7583	2.5	3.0	2.8	2.4	7624	chrX	1930532	intergenic	CG11596 +	chrX	1934344	intergenic	not near genes	chrX	1938156	3` UTR	CG3857 -	chrX_9_1930001	chrX_1930001	RAL-235
2380	chrX	2399829	2399862	chrX	2408202	2408215	roo	4	8360	2.0	2.5	2.2	1.2	8386	chrX	2399829	intergenic	not near genes	chrX	2404022	intergenic	not near genes	chrX	2408215	intergenic	not near genes	chrX_4_2400001	chrX_2400001	RAL-235
2387	chrX	2844887	2844931	chrX	2852311	2852361	mdg1	6	7424	4.0	2.5	3.2	1.4	7474	chrX	2844887	intron	kirre +	chrX	2848624	intron	kirre +	chrX	2852361	intron	kirre +	chrX_6_2845001	chrX_2845001	RAL-235
2390	chrX	3058028	3058048	chrX	3058283	3058307	pogo	5	259	4.5	4.0	4.2	1.0	279	chrX	3058028	intron	kirre +	chrX	3058168	intron	kirre +	chrX	3058307	intron	kirre +	chrX_5_3055001	chrX_3055001	RAL-235
2395	chrX	3415011	3415045	chrX	3421208	3421235	3S18	6	6198	2.5	1.5	2.0	2.0	6224	chrX	3415011	intron,intron	CR44999 +,CG12535 -	chrX	3418123	intron,intron	CR44999 +,CG12535 -	chrX	3421235	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-235
2396	chrX	3493073	3493109	chrX	3502252	3502284	roo	4	9178	2.5	0.5	1.5	1.6	9211	chrX	3493073	intron,intron	CR44999 +,Gas8 -	chrX	3497678	intron,intron	CR44999 +,Gas8 -	chrX	3502284	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-235
2399	chrX	3597532	3597568	chrX	3619720	3619746	roo	6	22185	5.5	1.5	3.5	1.3	22214	chrX	3597532	intron	AstA-R1 +	chrX	3608639	intron	AstA-R1 +	chrX	3619746	intron	AstA-R1 +	chrX_6_3605001	chrX_3605001	RAL-235
2402	chrX	3726755	3726793	chrX	3730170	3730205	NOF	5	3415	3.0	1.5	2.2	1.6	3450	chrX	3726755	intron	tlk +	chrX	3728480	intron	tlk +	chrX	3730205	intron	tlk +	chrX_5_3725001	chrX_3725001	RAL-235
2403	chrX	3752386	3752404	chrX	3764750	3764753	17.6	9	12362	11.0	9.0	10.0	0.8	12367	chrX	3752386	intron	tlk +	chrX	3758570	intron	tlk +	chrX	3764753	intron	tlk +	chrX_9_3755001	chrX_3755001	RAL-235
2404	chrX	3842336	3842351	chrX	3842574	3842579	pogo	6	235	2.5	2.5	2.5	1.7	243	chrX	3842336	intron	ec +	chrX	3842458	intron	ec +	chrX	3842579	intron	ec +	chrX_6_3840001	chrX_3840001	RAL-235
2405	chrX	3986848	3986880	chrX	3994501	3994530	412	10	7651	3.0	3.5	3.2	2.4	7682	chrX	3986848	intergenic	not near genes	chrX	3990689	intergenic	not near genes	chrX	3994530	intergenic	not near genes	chrX_10_3990001	chrX_3990001	RAL-235
2410	chrX	4157900	4157917	chrX	4164966	4164984	297	7	7071	3.5	3.0	3.2	1.7	7084	chrX	4157900	intron	Fas2 -	chrX	4161442	intron	Fas2 -	chrX	4164984	intron	Fas2 -	chrX_7_4160001	chrX_4160001	RAL-235
2417	chrX	4700405	4700427	chrX	4700736	4700785	jockey	5	354	2.0	4.5	3.2	1.2	380	chrX	4700405	3` UTR	ctp +	chrX	4700595	3` UTR	ctp +	chrX	4700785	3` UTR	ctp +	chrX_5_4700001	chrX_4700001	RAL-235
2418	chrX	4763232	4763280	chrX	4763738	4763787	Stalker4	10	502	0.0	2.5	1.2	4.5	555	chrX	4763232	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763787	intergenic	not near genes	chrX_10_4760001	chrX_4760001	RAL-235
2419	chrX	4792373	4792406	chrX	4792823	4792829	jockey	5	441	4.5	3.0	3.8	1.0	456	chrX	4792373	intergenic	not near genes	chrX	4792601	intergenic	not near genes	chrX	4792829	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-235
2421	chrX	4990027	4990039	chrX	4997261	4997273	roo	5	7233	6.0	4.5	5.2	0.8	7246	chrX	4990027	intron	CR44833 -	chrX	4993650	intron	CR44833 -	chrX	4997273	intron	CR44833 -	chrX_5_4990001	chrX_4990001	RAL-235
2422	chrX	4990043	4990067	chrX	4997256	4997301	roo	7	7231	3.0	4.5	3.8	1.5	7258	chrX	4990043	intron	CR44833 -	chrX	4993672	intron	CR44833 -	chrX	4997301	intron	CR44833 -	chrX_7_4990001	chrX_4990001	RAL-235
2423	chrX	5096259	5096303	chrX	5103844	5103885	springer	6	7584	0.5	1.5	1.0	3.0	7626	chrX	5096259	intron,intron	CG15465 +,rg +	chrX	5100072	intron,intron	CG15465 +,rg +	chrX	5103885	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RAL-235
2431	chrX	5524823	5524855	chrX	5528702	5528731	412	7	3874	3.0	0.0	1.5	2.8	3908	chrX	5524823	intergenic	snoRNA:Psi28S-3342 -	chrX	5526777	intergenic	not near genes	chrX	5528731	intergenic	Vsx2 -	chrX_7_5525001	chrX_5525001	RAL-235
2432	chrX	5883792	5883841	chrX	5884053	5884091	pogo	10	258	1.5	1.5	1.5	4.0	299	chrX	5883792	intron	CR45668 -	chrX	5883942	intron	CR45668 -	chrX	5884091	intron	CR45668 -	chrX_10_5880001	chrX_5880001	RAL-235
2433	chrX	5884149	5884185	chrX	5884409	5884446	pogo	7	257	3.0	4.0	3.5	1.6	297	chrX	5884149	intron	CR45668 -	chrX	5884298	intron	CR45668 -	chrX	5884446	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-235
2437	chrX	6171566	6171589	chrX	6179019	6179021	Quasimodo	6	7448	7.5	3.0	5.2	1.0	7455	chrX	6171566	intron	Ca-alpha1T -	chrX	6175294	intron	Ca-alpha1T -	chrX	6179021	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-235
2438	chrX	6171596	6171613	chrX	6179014	6179066	Quasimodo	9	7443	4.5	2.0	3.2	2.1	7470	chrX	6171596	intron	Ca-alpha1T -	chrX	6175331	intron	Ca-alpha1T -	chrX	6179066	intron	Ca-alpha1T -	chrX_9_6175001	chrX_6175001	RAL-235
2441	chrX	6335222	6335243	chrX	6337730	6337773	Tirant	5	2522	0.0	4.5	2.2	1.6	2551	chrX	6335222	intergenic	not near genes	chrX	6336498	intergenic	not near genes	chrX	6337773	5` UTR	CG3842 +	chrX_5_6335001	chrX_6335001	RAL-235
2444	chrX	6562802	6562848	chrX	6571304	6571321	Tirant	11	8490	3.5	6.0	4.8	1.9	8519	chrX	6562802	intron	CG34417 +	chrX	6567062	intron	CG34417 +	chrX	6571321	intron	CG34417 +	chrX_11_6565001	chrX_6565001	RAL-235
2445	chrX	6605463	6605468	chrX	6608505	6608508	Burdock	5	3041	4.0	4.5	4.2	1.0	3045	chrX	6605463	intron	pigs +	chrX	6606986	intron	pigs +	chrX	6608508	intron	pigs +	chrX_5_6605001	chrX_6605001	RAL-235
2446	chrX	6605470	6605500	chrX	6608501	6608536	Burdock	9	3039	3.5	4.5	4.0	1.8	3066	chrX	6605470	intron	pigs +	chrX	6607003	intron	pigs +	chrX	6608536	intron	pigs +	chrX_9_6605001	chrX_6605001	RAL-235
2451	chrX	7023602	7023625	chrX	7030994	7031035	Tabor	8	7396	10.5	5.0	7.8	0.9	7433	chrX	7023602	intron	CG12541 -	chrX	7027318	intron	CG12541 -	chrX	7031035	intron	CG12541 -	chrX_8_7025001	chrX_7025001	RAL-235
2452	chrX	7125226	7125272	chrX	7134405	7134451	roo	6	9179	0.5	3.5	2.0	2.0	9225	chrX	7125226	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134451	intergenic	not near genes	chrX_6_7125001	chrX_7125001	RAL-235
2457	chrX	7702891	7702910	chrX	7703350	7703369	jockey	5	457	4.0	11.0	7.5	0.6	478	chrX	7702891	intron	CHES-1-like -	chrX	7703130	intron	CHES-1-like -	chrX	7703369	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-235
2458	chrX	7702914	7702930	chrX	7703342	7703389	jockey	7	450	1.5	7.5	4.5	1.3	475	chrX	7702914	intron	CHES-1-like -	chrX	7703152	intron	CHES-1-like -	chrX	7703389	intron	CHES-1-like -	chrX_7_7700001	chrX_7700001	RAL-235
2460	chrX	8031407	8031452	chrX	8035736	8035768	Juan	4	4326	4.0	2.0	3.0	1.0	4361	chrX	8031407	intergenic	not near genes	chrX	8033588	intergenic	not near genes	chrX	8035768	3` UTR	CG2233 -	chrX_4_8030001	chrX_8030001	RAL-235
2463	chrX	8364836	8364872	chrX	8365249	8365277	BS	12	414	4.0	3.0	3.5	2.7	441	chrX	8364836	intron	nAChRalpha3 -	chrX	8365056	intron	nAChRalpha3 -	chrX	8365277	intron	nAChRalpha3 -	chrX_12_8365001	chrX_8365001	RAL-235
2470	chrX	8922335	8922360	chrX	8922759	8922810	jockey	14	420	1.5	3.0	2.2	4.4	475	chrX	8922335	intron	rdgA +	chrX	8922572	intron	rdgA +	chrX	8922810	intron	rdgA +	chrX_14_8920001	chrX_8920001	RAL-235
2471	chrX	8948743	8948781	chrX	8956271	8956311	roo	11	7527	2.5	2.5	2.5	3.1	7568	chrX	8948743	intron	rdgA +	chrX	8952527	intron	rdgA +	chrX	8956311	intron	rdgA +	chrX_11_8950001	chrX_8950001	RAL-235
2476	chrX	9508122	9508147	chrX	9509660	9509685	jockey	4	1536	8.5	1.5	5.0	0.7	1563	chrX	9508122	intron	CG32700 -	chrX	9508904	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-235
2478	chrX	9575795	9575808	chrX	9576120	9576142	mdg3	5	334	3.0	2.5	2.8	1.3	347	chrX	9575795	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576142	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-235
2479	chrX	9575809	9575822	chrX	9576115	9576164	mdg3	6	316	2.0	2.5	2.2	1.9	355	chrX	9575809	intron,exon	CG32699 -,CG42395 -	chrX	9575986	intron,intron	CG32699 -,CG42395 -	chrX	9576164	intron,5` UTR	CG32699 -,CG42395 -	chrX_6_9575001	chrX_9575001	RAL-235
2486	chrX	10138212	10138247	chrX	10145736	10145771	412	11	7521	5.5	6.5	6.0	1.6	7559	chrX	10138212	intron,intron	RhoU +,CR44894 -	chrX	10141992	intron,intron	RhoU +,CR44894 -	chrX	10145771	intron,intron	RhoU +,CR44894 -	chrX_11_10140001	chrX_10140001	RAL-235
2488	chrX	10267298	10267316	chrX	10276468	10276486	roo	8	9168	1.0	2.5	1.8	2.9	9188	chrX	10267298	3` UTR	alpha-Man-I -	chrX	10271892	intron	alpha-Man-I -	chrX	10276486	3` UTR	alpha-Man-I -	chrX_8_10270001	chrX_10270001	RAL-235
2490	chrX	10348816	10348826	chrX	10356395	10356410	springer	6	7584	3.0	7.0	5.0	1.0	7594	chrX	10348816	intergenic	snoRNA:U3:9B +	chrX	10352613	intergenic	not near genes	chrX	10356410	intergenic	l(1)G0289 -	chrX_6_10350001	chrX_10350001	RAL-235
2494	chrX	10525047	10525076	chrX	10532130	10532167	297	6	7088	5.5	2.0	3.8	1.2	7120	chrX	10525047	intron	spri -	chrX	10528607	intron	spri -	chrX	10532167	intron	spri -	chrX_6_10525001	chrX_10525001	RAL-235
2497	chrX	10550837	10550874	chrX	10552324	10552341	hobo	5	1482	4.0	0.5	2.2	1.6	1504	chrX	10550837	intron	spri -	chrX	10551589	intron	spri -	chrX	10552341	intron	spri -	chrX_5_10550001	chrX_10550001	RAL-235
2499	chrX	10686030	10686077	chrX	10691187	10691229	roo	15	5154	5.5	2.0	3.8	3.1	5199	chrX	10686030	intron	X11Lbeta +	chrX	10688630	intron	X11Lbeta +	chrX	10691229	intron	X11Lbeta +	chrX_15_10685001	chrX_10685001	RAL-235
2503	chrX	11095981	11096027	chrX	11103103	11103134	HMS-Beagle	17	7118	2.5	4.0	3.2	4.0	7153	chrX	11095981	intergenic	not near genes	chrX	11099558	intergenic	not near genes	chrX	11103134	intron	CG42249 +	chrX_17_11095001	chrX_11095001	RAL-235
2506	chrX	11184254	11184274	chrX	11189341	11189370	flea	5	5091	2.5	2.0	2.2	1.6	5116	chrX	11184254	intergenic	not near genes	chrX	11186812	intergenic	not near genes	chrX	11189370	intergenic	not near genes	chrX_5_11185001	chrX_11185001	RAL-235
2508	chrX	11312043	11312081	chrX	11319416	11319445	Stalker2	4	7366	6.5	2.5	4.5	0.7	7402	chrX	11312043	intergenic	not near genes	chrX	11315744	intergenic	not near genes	chrX	11319445	intergenic	not near genes	chrX_4_11315001	chrX_11315001	RAL-235
2509	chrX	11633395	11633445	chrX	11640469	11640518	297	12	7074	5.5	5.5	5.5	1.8	7123	chrX	11633395	intron	Ptp10D +	chrX	11636956	intron	Ptp10D +	chrX	11640518	intron	Ptp10D +	chrX_12_11635001	chrX_11635001	RAL-235
2510	chrX	11645095	11645133	chrX	11648283	11648323	NOF	5	3189	3.0	4.5	3.8	1.0	3228	chrX	11645095	intron	Ptp10D +	chrX	11646709	intron	Ptp10D +	chrX	11648323	intron	Ptp10D +	chrX_5_11645001	chrX_11645001	RAL-235
2530	chrX	13401470	13401513	chrX	13401842	13401885	jockey	6	372	4.0	5.0	4.5	1.1	415	chrX	13401470	intergenic	CG1673 +,CG12725 -	chrX	13401678	intergenic	CG12725 -,CG1673 +	chrX	13401885	3` UTR	CG12725 -	chrX_6_13400001	chrX_13400001	RAL-235
2531	chrX	13429478	13429487	chrX	13430632	13430646	jockey	4	1162	0.0	9.5	4.8	0.7	1168	chrX	13429478	intergenic	not near genes	chrX	13430062	intergenic	not near genes	chrX	13430646	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-235
2533	chrX	13463629	13463676	chrX	13469226	13469273	mdg3	14	5591	5.0	5.0	5.0	2.3	5644	chrX	13463629	intron	Neto +	chrX	13466451	intron	Neto +	chrX	13469273	intron	Neto +	chrX_14_13465001	chrX_13465001	RAL-235
2538	chrX	13937965	13938002	chrX	13941256	13941291	I-element	5	3283	5.5	0.5	3.0	1.2	3326	chrX	13937965	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941291	intron	mamo -	chrX_5_13935001	chrX_13935001	RAL-235
2540	chrX	14105007	14105049	chrX	14114178	14114179	roo	10	9154	3.0	2.5	2.8	2.6	9172	chrX	14105007	intergenic	not near genes	chrX	14109593	intergenic	not near genes	chrX	14114179	5` UTR	CR44657 +	chrX_10_14105001	chrX_14105001	RAL-235
2542	chrX	14157576	14157595	chrX	14163253	14163271	297	5	5675	7.0	4.5	5.8	0.7	5695	chrX	14157576	intergenic	not near genes	chrX	14160424	intergenic	not near genes	chrX	14163271	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-235
2547	chrX	14416293	14416308	chrX	14421080	14421090	F-element	4	4786	5.5	3.0	4.2	0.8	4797	chrX	14416293	intron	dpr8 +	chrX	14418692	intron	dpr8 +	chrX	14421090	intron	dpr8 +	chrX_4_14415001	chrX_14415001	RAL-235
2548	chrX	14416311	14416333	chrX	14421073	14421120	F-element	5	4780	3.0	2.0	2.5	1.4	4809	chrX	14416311	intron	dpr8 +	chrX	14418716	intron	dpr8 +	chrX	14421120	intron	dpr8 +	chrX_5_14415001	chrX_14415001	RAL-235
2551	chrX	14636475	14636493	chrX	14641934	14641944	I-element	4	5455	3.0	5.5	4.2	0.8	5469	chrX	14636475	intron	NetA -	chrX	14639210	intron	NetA -	chrX	14641944	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-235
2553	chrX	14778015	14778049	chrX	14782832	14782865	Doc	9	4817	3.0	6.5	4.8	1.6	4850	chrX	14778015	intergenic	CG5347 +	chrX	14780440	intergenic	not near genes	chrX	14782865	intergenic	Ag5r2 -	chrX_9_14780001	chrX_14780001	RAL-235
2555	chrX	14818764	14818798	chrX	14823977	14824001	copia	5	5206	1.0	2.5	1.8	1.8	5237	chrX	14818764	intron	rut -	chrX	14821382	intron	rut -	chrX	14824001	intron	rut -	chrX_5_14820001	chrX_14820001	RAL-235
2559	chrX	14936842	14936893	chrX	14946119	14946163	roo	11	9275	3.5	3.5	3.5	2.4	9321	chrX	14936842	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946163	intron	pdgy -	chrX_11_14940001	chrX_14940001	RAL-235
2564	chrX	15413031	15413084	chrX	15417353	15417391	Juan	6	4315	2.5	2.5	2.5	1.7	4360	chrX	15413031	intron	Cngl -	chrX	15415211	intron	Cngl -	chrX	15417391	intron	Cngl -	chrX_6_15415001	chrX_15415001	RAL-235
2572	chrX	16222764	16222771	chrX	16231133	16231141	roo	4	8370	9.0	3.0	6.0	0.6	8377	chrX	16222764	intergenic	not near genes	chrX	16226952	intergenic	not near genes	chrX	16231141	intergenic	not near genes	chrX_4_16225001	chrX_16225001	RAL-235
2573	chrX	16222773	16222809	chrX	16231131	16231179	roo	8	8364	4.5	2.5	3.5	1.8	8406	chrX	16222773	intergenic	not near genes	chrX	16226976	intergenic	not near genes	chrX	16231179	intergenic	not near genes	chrX_8_16225001	chrX_16225001	RAL-235
2575	chrX	16340648	16340697	chrX	16349823	16349874	roo	5	9175	0.0	3.5	1.8	1.8	9226	chrX	16340648	intergenic	Dsp1 +	chrX	16345261	intergenic	not near genes	chrX	16349874	intergenic	sl +	chrX_5_16345001	chrX_16345001	RAL-235
2576	chrX	16492627	16492669	chrX	16498223	16498242	mdg3	18	5595	6.0	4.5	5.2	2.9	5615	chrX	16492627	intron	para -	chrX	16495434	intron	para -	chrX	16498242	intron	para -	chrX_18_16495001	chrX_16495001	RAL-235
2584	chrX	17057933	17057963	chrX	17058189	17058224	pogo	5	260	2.0	4.0	3.0	1.2	291	chrX	17057933	intron	CG45002 -	chrX	17058078	intron	CG45002 -	chrX	17058224	intron	CG45002 -	chrX_5_17055001	chrX_17055001	RAL-235
2585	chrX	17195201	17195237	chrX	17200295	17200324	flea	8	5094	4.5	2.5	3.5	1.8	5123	chrX	17195201	3` UTR	baz +	chrX	17197762	3` UTR	baz +	chrX	17200324	3` UTR	baz +	chrX_8_17195001	chrX_17195001	RAL-235
2601	chrX	18194051	18194104	chrX	18194606	18194634	BS	7	550	4.5	2.0	3.2	1.7	583	chrX	18194051	intron	Frq2 +	chrX	18194342	intron	Frq2 +	chrX	18194634	intron	Frq2 +	chrX_7_18190001	chrX_18190001	RAL-235
2602	chrX	18429478	18429487	chrX	18434806	18434816	Transpac	5	5329	1.5	3.0	2.2	1.6	5338	chrX	18429478	intergenic	not near genes	chrX	18432147	intergenic	not near genes	chrX	18434816	intergenic	not near genes	chrX_5_18430001	chrX_18430001	RAL-235
2603	chrX	18429489	18429524	chrX	18434805	18434855	Transpac	10	5328	2.5	3.0	2.8	2.6	5366	chrX	18429489	intergenic	not near genes	chrX	18432172	intergenic	not near genes	chrX	18434855	intergenic	not near genes	chrX_10_18430001	chrX_18430001	RAL-235
2613	chrX	18957059	18957098	chrX	18965742	18965774	roo	7	8674	5.0	2.5	3.8	1.5	8715	chrX	18957059	intron	CG43759 +	chrX	18961416	intron	CG43759 +	chrX	18965774	intron	CG43759 +	chrX_7_18960001	chrX_18960001	RAL-235
2616	chrX	19060391	19060434	chrX	19065195	19065238	Doc	15	4802	2.5	1.0	1.8	5.4	4847	chrX	19060391	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065238	intron	CG14190 +	chrX_15_19060001	chrX_19060001	RAL-235
2622	chrX	19136537	19136584	chrX	19143477	19143490	412	7	6926	2.5	0.5	1.5	2.8	6953	chrX	19136537	intergenic	not near genes	chrX	19140014	intergenic	not near genes	chrX	19143490	3` UTR	RhoGAP18B -	chrX_7_19140001	chrX_19140001	RAL-235
2624	chrX	19356974	19357020	chrX	19358429	19358497	NOF	11	1459	3.5	0.5	2.0	3.7	1523	chrX	19356974	intron	kek5 +	chrX	19357736	intron	kek5 +	chrX	19358497	intron	kek5 +	chrX_11_19355001	chrX_19355001	RAL-235
2625	chrX	19380155	19380168	chrX	19380401	19380429	pogo	5	253	5.5	4.5	5.0	0.8	274	chrX	19380155	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380429	intron	kek5 +	chrX_5_19380001	chrX_19380001	RAL-235
2626	chrX	19472123	19472153	chrX	19472703	19472726	jockey	5	578	2.0	2.0	2.0	1.7	603	chrX	19472123	intergenic	kek5 +	chrX	19472424	intergenic	not near genes	chrX	19472726	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RAL-235
2660	chrX	20836704	20836756	chrX	20844326	20844378	roo	5	7621	4.0	2.5	3.2	1.2	7674	chrX	20836704	intron	shakB -	chrX	20840541	intron	shakB -	chrX	20844378	intron	shakB -	chrX_5_20840001	chrX_20840001	RAL-235
2663	chrX	20940699	20940742	chrX	20942188	20942226	hobo	9	1483	3.0	1.5	2.2	2.8	1527	chrX	20940699	intergenic	not near genes	chrX	20941462	intergenic	not near genes	chrX	20942226	intergenic	not near genes	chrX_9_20940001	chrX_20940001	RAL-235
2665	chrX	20956974	20957014	chrX	20962436	20962476	I-element	6	5459	5.0	5.0	5.0	1.0	5502	chrX	20956974	intergenic	not near genes	chrX	20959725	intergenic	not near genes	chrX	20962476	intergenic	Ser6 -	chrX_6_20955001	chrX_20955001	RAL-235
2668	chrX	21086125	21086159	chrX	21087161	21087208	jockey	11	1043	3.0	2.5	2.8	2.9	1083	chrX	21086125	intergenic	not near genes	chrX	21086666	intergenic	not near genes	chrX	21087208	intergenic	not near genes	chrX_11_21085001	chrX_21085001	RAL-235
2678	chrX	21458692	21458731	chrX	21464133	21464178	Ivk	8	5444	0.0	2.5	1.2	3.6	5486	chrX	21458692	intergenic	not near genes	chrX	21461435	intergenic	not near genes	chrX	21464178	intergenic	not near genes	chrX_8_21460001	chrX_21460001	RAL-235
2689	chrX	22697491	22697521	chrX	22701798	22701833	Juan	7	4310	5.0	5.0	5.0	1.2	4342	chrX	22697491	intron	CR44997 +	chrX	22699662	intron	CR44997 +	chrX	22701833	intron	CR44997 +	chrX_7_22695001	chrX_22695001	RAL-235
2691	chrX	22771486	22771533	chrX	22774797	22774829	297	10	3306	2.5	1.0	1.8	3.6	3343	chrX	22771486	intron	CR44997 +	chrX	22773158	intron	CR44997 +	chrX	22774829	intron	CR44997 +	chrX_10_22770001	chrX_22770001	RAL-235
2693	chrX	22811982	22812003	chrX	22816775	22816795	F-element	5	4789	7.5	3.5	5.5	0.8	4813	chrX	22811982	intergenic	CG12446 -	chrX	22814388	intergenic	not near genes	chrX	22816795	intergenic	not near genes	chrX_5_22810001	chrX_22810001	RAL-235
2695	chrX	22967370	22967503	chrX	23154541	23154690	diver	5	187168	4.5	15.0	9.8	0.5	187320	chrX	22967370	intergenic	not near genes	chrX	23061030	intergenic	not near genes	chrX	23154690	intergenic	not near genes	chrX_5_23060001	chrX_23060001	RAL-235
2696	chrX	22987093	22987132	chrX	22989771	22989811	Burdock	11	2675	3.0	2.5	2.8	2.9	2718	chrX	22987093	intron,intron	stnA -,stnB -	chrX	22988452	intron,intron	stnA -,stnB -	chrX	22989811	intron,intron	stnA -,stnB -	chrX_11_22985001	chrX_22985001	RAL-235
2697	chrX	22996302	22996341	chrX	23003546	23003593	roo	17	7249	2.5	3.5	3.0	4.2	7291	chrX	22996302	intron,intron	stnA -,stnB -	chrX	22999948	intron,intron	stnA -,stnB -	chrX	23003593	intron,intron	stnA -,stnB -	chrX_17_22995001	chrX_22995001	RAL-235
2698	chrX	23036370	23036411	chrX	23037786	23037827	pogo	6	1419	1.5	2.5	2.0	2.0	1457	chrX	23036370	intron	CG12061 +	chrX	23037098	intron	CG12061 +	chrX	23037827	intron	CG12061 +	chrX_6_23035001	chrX_23035001	RAL-235