SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47449 47475 chr2L 52574 52600 jockey 8 5125 7.5 8.0 7.8 0.9 5151 chr2L 47449 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52600 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-235 2 chr2L 47477 47490 chr2L 52567 52604 jockey 6 5110 4.5 6.0 5.2 1.0 5127 chr2L 47477 intron Cda5 - chr2L 50040 intron Cda5 - chr2L 52604 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-235 3 chr2L 325114 325139 chr2L 325208 325231 4 95 3.0 5.5 4.2 0.8 117 chr2L 325114 intron Plc21C + chr2L 325172 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-235 4 chr2L 347867 347919 chr2L 355384 355393 blood 17 7508 4.5 3.5 4.0 3.4 7526 chr2L 347867 3` UTR Plc21C + chr2L 351630 intron Plc21C + chr2L 355393 3` UTR Plc21C + chr2L_17_350001 chr2L_350001 RAL-235 5 chr2L 371423 371456 chr2L 371522 371552 5 95 3.0 6.0 4.5 0.9 129 chr2L 371423 intergenic not near genes chr2L 371488 intergenic not near genes chr2L 371552 intergenic not near genes chr2L_5_370001 chr2L_370001 RAL-235 6 chr2L 407930 407973 chr2L 408031 408074 22 99 6.5 4.5 5.5 3.4 144 chr2L 407930 3` UTR RpI135 + chr2L 408002 intergenic AP-2alpha -,RpI135 + chr2L 408074 3` UTR AP-2alpha - chr2L_22_405001 chr2L_405001 RAL-235 7 chr2L 436854 436906 chr2L 436951 437003 19 95 4.0 2.5 3.2 4.5 149 chr2L 436854 intron ex + chr2L 436928 intron ex + chr2L 437003 intron ex + chr2L_19_435001 chr2L_435001 RAL-235 8 chr2L 467340 467361 chr2L 467458 467480 6 115 10.0 15.5 12.8 0.4 140 chr2L 467340 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467480 intron CG4297 - chr2L_6_465001 chr2L_465001 RAL-235 9 chr2L 666263 666305 chr2L 666357 666401 6 95 2.5 0.5 1.5 2.4 138 chr2L 666263 intron ds - chr2L 666332 intron ds - chr2L 666401 intron ds - chr2L_6_665001 chr2L_665001 RAL-235 10 chr2L 686922 686946 chr2L 695957 695968 roo 10 9049 1.5 4.5 3.0 2.5 9046 chr2L 686922 intron ds - chr2L 691445 intron ds - chr2L 695968 intron ds - chr2L_10_690001 chr2L_690001 RAL-235 11 chr2L 736865 736903 chr2L 736990 737028 11 123 6.0 6.5 6.2 1.5 163 chr2L 736865 intergenic Eaat2 - chr2L 736946 intergenic Eaat2 - chr2L 737028 intergenic Eaat2 - chr2L_11_735001 chr2L_735001 RAL-235 12 chr2L 770451 770483 chr2L 772245 772276 Bari1 11 1792 1.5 3.5 2.5 3.1 1825 chr2L 770451 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772276 intergenic CR44614 + chr2L_11_770001 chr2L_770001 RAL-235 13 chr2L 795281 795293 chr2L 795370 795387 5 121 0.0 0.5 0.2 4.2 106 chr2L 795281 intergenic not near genes chr2L 795334 intergenic not near genes chr2L 795387 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-235 14 chr2L 849465 849485 chr2L 849563 849585 7 99 2.5 7.0 4.8 1.2 120 chr2L 849465 intron drongo - chr2L 849525 intron drongo - chr2L 849585 intron drongo - chr2L_7_845001 chr2L_845001 RAL-235 15 chr2L 877831 877867 chr2L 877921 877968 11 96 3.0 3.5 3.2 2.6 137 chr2L 877831 3` UTR,exon CG15824 -,ninaA + chr2L 877900 3` UTR,intron CG15824 -,ninaA + chr2L 877968 3` UTR,intron CG15824 -,ninaA + chr2L_11_875001 chr2L_875001 RAL-235 16 chr2L 976864 976913 chr2L 984515 984546 roo 11 7650 6.0 5.5 5.8 1.6 7682 chr2L 976864 intergenic not near genes chr2L 980705 intergenic not near genes chr2L 984546 intergenic not near genes chr2L_11_980001 chr2L_980001 RAL-235 17 chr2L 1035542 1035585 chr2L 1035639 1035642 11 90 5.5 1.5 3.5 2.4 100 chr2L 1035542 intron IA-2 - chr2L 1035592 intron IA-2 - chr2L 1035642 intron IA-2 - chr2L_11_1035001 chr2L_1035001 RAL-235 18 chr2L 1042598 1042613 chr2L 1042695 1042709 4 96 3.5 0.0 1.8 1.4 111 chr2L 1042598 intron IA-2 - chr2L 1042654 intron IA-2 - chr2L 1042709 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-235 19 chr2L 1066086 1066127 chr2L 1066174 1066200 10 88 4.0 3.5 3.8 2.1 114 chr2L 1066086 intron S - chr2L 1066143 intron S - chr2L 1066200 intron S - chr2L_10_1065001 chr2L_1065001 RAL-235 20 chr2L 1083678 1083720 chr2L 1083774 1083816 15 93 3.5 3.5 3.5 3.3 138 chr2L 1083678 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083747 3` UTR,3` UTR Atg4a +,CG4629 - chr2L 1083816 3` UTR,3` UTR Atg4a +,CG4629 - chr2L_15_1080001 chr2L_1080001 RAL-235 21 chr2L 1137636 1137669 chr2L 1137836 1137869 17 199 8.5 3.0 5.8 2.5 233 chr2L 1137636 intron CG4577 + chr2L 1137752 intron CG4577 + chr2L 1137869 intron CG4577 + chr2L_17_1135001 chr2L_1135001 RAL-235 22 chr2L 1156864 1156892 chr2L 1156964 1157017 5 113 3.0 2.5 2.8 1.3 153 chr2L 1156864 intron capt - chr2L 1156940 intron capt - chr2L 1157017 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-235 23 chr2L 1220115 1220160 chr2L 1227601 1227646 blood 8 7481 4.0 7.5 5.8 1.2 7531 chr2L 1220115 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227646 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-235 24 chr2L 1450680 1450728 chr2L 1450784 1450833 9 100 1.5 2.5 2.0 3.0 153 chr2L 1450680 intergenic not near genes chr2L 1450756 intergenic not near genes chr2L 1450833 intergenic not near genes chr2L_9_1450001 chr2L_1450001 RAL-235 25 chr2L 1503409 1503459 chr2L 1503502 1503557 20 95 3.0 3.0 3.0 5.0 148 chr2L 1503409 intron CR44064 + chr2L 1503483 intron CR44064 + chr2L 1503557 intron CR44064 + chr2L_20_1500001 chr2L_1500001 RAL-235 26 chr2L 1570673 1570699 chr2L 1573565 1573583 F-element 4 2888 7.5 2.0 4.8 0.7 2910 chr2L 1570673 intron haf + chr2L 1572128 intron haf + chr2L 1573583 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-235 27 chr2L 1635393 1635407 chr2L 1635542 1635563 4 154 4.0 6.5 5.2 0.6 170 chr2L 1635393 intergenic not near genes chr2L 1635478 intergenic not near genes chr2L 1635563 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-235 28 chr2L 1635409 1635429 chr2L 1635537 1635560 7 145 3.0 5.5 4.2 1.3 151 chr2L 1635409 intergenic not near genes chr2L 1635484 intergenic not near genes chr2L 1635560 intergenic not near genes chr2L_7_1635001 chr2L_1635001 RAL-235 29 chr2L 1644101 1644117 chr2L 1644343 1644360 7 243 7.0 3.5 5.2 1.1 259 chr2L 1644101 intergenic not near genes chr2L 1644230 intergenic not near genes chr2L 1644360 intergenic not near genes chr2L_7_1640001 chr2L_1640001 RAL-235 30 chr2L 1644118 1644140 chr2L 1644341 1644382 6 240 3.0 3.5 3.2 1.4 264 chr2L 1644118 intergenic not near genes chr2L 1644250 intergenic not near genes chr2L 1644382 intergenic not near genes chr2L_6_1640001 chr2L_1640001 RAL-235 31 chr2L 1662002 1662025 chr2L 1662107 1662123 7 103 3.0 0.0 1.5 2.8 121 chr2L 1662002 intron chinmo + chr2L 1662062 intron chinmo + chr2L 1662123 intron chinmo + chr2L_7_1660001 chr2L_1660001 RAL-235 32 chr2L 1678962 1678997 chr2L 1686441 1686477 blood 9 7483 3.5 9.0 6.2 1.2 7515 chr2L 1678962 intron chinmo + chr2L 1682720 intron chinmo + chr2L 1686477 intron chinmo + chr2L_9_1680001 chr2L_1680001 RAL-235 33 chr2L 1711346 1711381 chr2L 1711680 1711722 mdg3 5 335 3.0 2.5 2.8 1.3 376 chr2L 1711346 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711722 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-235 34 chr2L 1883410 1883444 chr2L 1884012 1884029 6 595 2.0 2.0 2.0 2.0 619 chr2L 1883410 intron CG15358 - chr2L 1883720 intron CG15358 - chr2L 1884029 exon CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-235 35 chr2L 1907617 1907620 chr2L 1907696 1907718 4 91 0.0 6.5 3.2 1.0 101 chr2L 1907617 intron CG7337 + chr2L 1907668 intron CG7337 + chr2L 1907718 intron CG7337 + chr2L_4_1905001 chr2L_1905001 RAL-235 36 chr2L 1925468 1925501 chr2L 1925565 1925598 7 97 5.5 4.0 4.8 1.2 130 chr2L 1925468 intron CG7337 + chr2L 1925533 intron CG7337 + chr2L 1925598 intron CG7337 + chr2L_7_1925001 chr2L_1925001 RAL-235 37 chr2L 1930595 1930617 chr2L 1930688 1930705 8 93 2.5 3.0 2.8 2.1 110 chr2L 1930595 intron CG7337 + chr2L 1930650 intron CG7337 + chr2L 1930705 intron CG7337 + chr2L_8_1930001 chr2L_1930001 RAL-235 38 chr2L 1950345 1950394 chr2L 1950449 1950462 4 91 4.0 1.5 2.8 1.1 117 chr2L 1950345 3` UTR erm - chr2L 1950404 3` UTR erm - chr2L 1950462 3` UTR erm - chr2L_4_1950001 chr2L_1950001 RAL-235 39 chr2L 2009636 2009680 chr2L 2009745 2009776 12 104 3.5 2.5 3.0 3.0 140 chr2L 2009636 intergenic CG4238 + chr2L 2009706 intergenic CG4238 + chr2L 2009776 intergenic CG4238 + chr2L_12_2005001 chr2L_2005001 RAL-235 40 chr2L 2061373 2061411 chr2L 2061456 2061497 11 92 2.0 2.0 2.0 3.7 124 chr2L 2061373 intron dpr3 - chr2L 2061435 intron dpr3 - chr2L 2061497 intron dpr3 - chr2L_11_2060001 chr2L_2060001 RAL-235 41 chr2L 2100386 2100402 chr2L 2109531 2109552 roo 4 9154 9.0 2.0 5.5 0.6 9166 chr2L 2100386 intron dpr3 - chr2L 2104969 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-235 42 chr2L 2130809 2130828 chr2L 2137383 2137409 5 6579 16.0 39.5 27.8 0.2 6600 chr2L 2130809 intergenic GlyP + chr2L 2134109 intron GlyP + chr2L 2137409 3` UTR tho2 - chr2L_5_2130001 chr2L_2130001 RAL-235 43 chr2L 2198228 2198273 chr2L 2198351 2198387 8 117 1.5 5.0 3.2 1.9 159 chr2L 2198228 intergenic CG34172 - chr2L 2198308 intergenic CG34172 - chr2L 2198387 intergenic CG34172 - chr2L_8_2195001 chr2L_2195001 RAL-235 44 chr2L 2250708 2250724 chr2L 2250819 2250840 8 111 3.0 1.5 2.2 2.5 132 chr2L 2250708 exon Ser12 - chr2L 2250774 exon Ser12 - chr2L 2250840 exon Ser12 - chr2L_8_2250001 chr2L_2250001 RAL-235 45 chr2L 2293276 2293291 chr2L 2293374 2293376 6 102 3.5 3.0 3.2 1.4 100 chr2L 2293276 intergenic not near genes chr2L 2293326 intergenic not near genes chr2L 2293376 intergenic not near genes chr2L_6_2290001 chr2L_2290001 RAL-235 46 chr2L 2317102 2317130 chr2L 2317293 2317321 4 190 25.5 18.0 21.8 0.2 219 chr2L 2317102 intron,intron CG9967 -,eys + chr2L 2317212 intron,intron CG9967 -,eys + chr2L 2317321 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-235 47 chr2L 2372344 2372400 chr2L 2372450 2372500 5 102 0.0 1.5 0.8 2.8 156 chr2L 2372344 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372500 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-235 48 chr2L 2472555 2472578 chr2L 2472753 2472771 9 196 4.0 2.0 3.0 2.2 216 chr2L 2472555 3` UTR CR45286 - chr2L 2472663 3` UTR CR45286 - chr2L 2472771 3` UTR CR45286 - chr2L_9_2470001 chr2L_2470001 RAL-235 49 chr2L 2472581 2472604 chr2L 2472752 2472782 7 183 1.5 1.5 1.5 2.8 201 chr2L 2472581 3` UTR CR45286 - chr2L 2472682 3` UTR CR45286 - chr2L 2472782 3` UTR CR45286 - chr2L_7_2470001 chr2L_2470001 RAL-235 50 chr2L 2504216 2504234 chr2L 2504307 2504332 9 95 4.5 2.5 3.5 2.0 116 chr2L 2504216 intergenic not near genes chr2L 2504274 intergenic not near genes chr2L 2504332 intergenic not near genes chr2L_9_2500001 chr2L_2500001 RAL-235 51 chr2L 2543476 2543509 chr2L 2543593 2543627 6 119 5.5 1.5 3.5 1.3 151 chr2L 2543476 intergenic not near genes chr2L 2543552 intergenic not near genes chr2L 2543627 intergenic not near genes chr2L_6_2540001 chr2L_2540001 RAL-235 52 chr2L 2557816 2557844 chr2L 2557921 2557949 13 102 1.0 4.0 2.5 3.7 133 chr2L 2557816 intergenic not near genes chr2L 2557882 intergenic not near genes chr2L 2557949 intergenic not near genes chr2L_13_2555001 chr2L_2555001 RAL-235 53 chr2L 2587811 2587845 chr2L 2587898 2587923 11 85 1.0 4.0 2.5 3.1 112 chr2L 2587811 intergenic not near genes chr2L 2587867 intergenic not near genes chr2L 2587923 intergenic not near genes chr2L_11_2585001 chr2L_2585001 RAL-235 54 chr2L 2618016 2618048 chr2L 2618115 2618124 10 94 4.0 0.0 2.0 3.3 108 chr2L 2618016 intergenic not near genes chr2L 2618070 intergenic not near genes chr2L 2618124 intergenic not near genes chr2L_10_2615001 chr2L_2615001 RAL-235 55 chr2L 2772605 2772613 chr2L 2779198 2779215 297 4 6596 4.5 8.5 6.5 0.5 6610 chr2L 2772605 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779215 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-235 56 chr2L 2782892 2782931 chr2L 2782990 2783026 4 94 2.5 0.0 1.2 1.8 134 chr2L 2782892 intron Syt1 - chr2L 2782959 intron Syt1 - chr2L 2783026 intron Syt1 - chr2L_4_2780001 chr2L_2780001 RAL-235 57 chr2L 2826526 2826574 chr2L 2826638 2826643 4 98 0.0 7.0 3.5 0.9 117 chr2L 2826526 intron Duox - chr2L 2826584 intron Duox - chr2L 2826643 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-235 58 chr2L 2863406 2863688 chr2L 2863497 2863789 12 97 8.5 4.0 6.2 1.7 383 chr2L 2863406 intron CG2991 + chr2L 2863598 intron CG2991 + chr2L 2863789 intron CG2991 + chr2L_12_2860001 chr2L_2860001 RAL-235 59 chr2L 2863698 2863720 chr2L 2863799 2863816 7 98 5.0 10.5 7.8 0.8 118 chr2L 2863698 intron CG2991 + chr2L 2863757 intron CG2991 + chr2L 2863816 intron CG2991 + chr2L_7_2860001 chr2L_2860001 RAL-235 60 chr2L 2895688 2895709 chr2L 2895772 2895815 8 99 5.5 0.0 2.8 2.1 127 chr2L 2895688 intron lilli + chr2L 2895752 intron lilli + chr2L 2895815 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-235 61 chr2L 2927955 2927969 chr2L 2928042 2928072 5 98 1.5 4.5 3.0 1.2 117 chr2L 2927955 intron lilli + chr2L 2928014 intron lilli + chr2L 2928072 intron lilli + chr2L_5_2925001 chr2L_2925001 RAL-235 62 chr2L 2932434 2932471 chr2L 2932904 2932942 15 472 5.0 2.5 3.8 3.1 508 chr2L 2932434 intron lilli + chr2L 2932688 intron lilli + chr2L 2932942 intron lilli + chr2L_15_2930001 chr2L_2930001 RAL-235 63 chr2L 2933296 2933332 chr2L 2935493 2935529 pogo 8 2195 5.5 6.0 5.8 1.2 2233 chr2L 2933296 intron lilli + chr2L 2934412 intron lilli + chr2L 2935529 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-235 64 chr2L 2937401 2937447 chr2L 2937498 2937544 19 94 6.0 3.5 4.8 3.3 143 chr2L 2937401 intron lilli + chr2L 2937472 intron lilli + chr2L 2937544 intron lilli + chr2L_19_2935001 chr2L_2935001 RAL-235 65 chr2L 3073012 3073036 chr2L 3078235 3078259 copia 11 5222 8.0 4.5 6.2 1.5 5247 chr2L 3073012 intron toc - chr2L 3075636 intron toc - chr2L 3078259 intron toc - chr2L_11_3075001 chr2L_3075001 RAL-235 66 chr2L 3073044 3073065 chr2L 3078232 3078240 copia 7 5205 2.0 4.5 3.2 1.7 5196 chr2L 3073044 intron toc - chr2L 3075642 intron toc - chr2L 3078240 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-235 67 chr2L 3092548 3092602 chr2L 3092653 3092702 20 101 3.0 4.0 3.5 4.4 154 chr2L 3092548 intron toc - chr2L 3092625 intron toc - chr2L 3092702 intron toc - chr2L_20_3090001 chr2L_3090001 RAL-235 68 chr2L 3108854 3108894 chr2L 3108946 3108991 5 93 4.0 3.0 3.5 1.1 137 chr2L 3108854 exon toc - chr2L 3108922 intron toc - chr2L 3108991 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-235 69 chr2L 3121968 3121986 chr2L 3122073 3122078 8 103 5.0 3.0 4.0 1.6 110 chr2L 3121968 intron toc - chr2L 3122023 intron toc - chr2L 3122078 intron toc - chr2L_8_3120001 chr2L_3120001 RAL-235 70 chr2L 3192202 3192211 chr2L 3192324 3192341 7 127 6.0 7.5 6.8 0.9 139 chr2L 3192202 exon CG34393 - chr2L 3192272 intron CG34393 - chr2L 3192341 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-235 71 chr2L 3192214 3192233 chr2L 3192323 3192354 7 122 2.5 7.0 4.8 1.2 140 chr2L 3192214 exon CG34393 - chr2L 3192284 intron CG34393 - chr2L 3192354 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-235 72 chr2L 3202718 3202767 chr2L 3210167 3210216 mdg1 19 7448 4.0 0.5 2.2 5.9 7498 chr2L 3202718 intergenic not near genes chr2L 3206467 intergenic not near genes chr2L 3210216 intergenic CR45336 + chr2L_19_3205001 chr2L_3205001 RAL-235 73 chr2L 3251475 3251525 chr2L 3259060 3259109 springer 16 7583 2.0 5.5 3.8 3.3 7634 chr2L 3251475 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259109 intergenic not near genes chr2L_16_3255001 chr2L_3255001 RAL-235 74 chr2L 3291233 3291268 chr2L 3291318 3291344 10 89 5.5 3.5 4.5 1.8 111 chr2L 3291233 intergenic CG9664 - chr2L 3291288 3` UTR CG9664 - chr2L 3291344 3` UTR CG9664 - chr2L_10_3290001 chr2L_3290001 RAL-235 75 chr2L 3323236 3323283 chr2L 3323363 3323389 6 117 3.5 4.0 3.8 1.2 153 chr2L 3323236 intergenic CG8837 + chr2L 3323312 intergenic CG8837 + chr2L 3323389 intergenic CG8837 + chr2L_6_3320001 chr2L_3320001 RAL-235 76 chr2L 3388586 3388625 chr2L 3388843 3388881 pogo 14 254 2.5 4.0 3.2 3.3 295 chr2L 3388586 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388881 intergenic CG42460 -,CR44791 + chr2L_14_3385001 chr2L_3385001 RAL-235 77 chr2L 3508334 3508370 chr2L 3508432 3508467 18 95 4.0 6.0 5.0 3.0 133 chr2L 3508334 intergenic tim -,CR45299 + chr2L 3508400 intergenic CR45299 +,tim - chr2L 3508467 intergenic CR45299 +,tim - chr2L_18_3505001 chr2L_3505001 RAL-235 78 chr2L 3575549 3575571 chr2L 3575645 3575647 7 88 5.5 4.0 4.8 1.2 98 chr2L 3575549 5` UTR CR43822 + chr2L 3575598 5` UTR CR43822 + chr2L 3575647 5` UTR CR43822 + chr2L_7_3575001 chr2L_3575001 RAL-235 79 chr2L 3575572 3575592 chr2L 3575644 3575689 8 76 3.5 4.0 3.8 1.7 117 chr2L 3575572 5` UTR CR43822 + chr2L 3575630 5` UTR CR43822 + chr2L 3575689 5` UTR CR43822 + chr2L_8_3575001 chr2L_3575001 RAL-235 80 chr2L 3601065 3601115 chr2L 3601170 3601215 8 101 3.5 0.0 1.8 2.9 150 chr2L 3601065 intergenic not near genes chr2L 3601140 intergenic not near genes chr2L 3601215 intergenic not near genes chr2L_8_3600001 chr2L_3600001 RAL-235 81 chr2L 3632248 3632274 chr2L 3632344 3632363 4 90 0.5 1.5 1.0 2.0 115 chr2L 3632248 intron for - chr2L 3632306 intron for - chr2L 3632363 intron for - chr2L_4_3630001 chr2L_3630001 RAL-235 82 chr2L 3663302 3663340 chr2L 3663386 3663433 20 95 4.0 4.5 4.2 3.8 131 chr2L 3663302 5` UTR CG34340 + chr2L 3663368 intron CG34340 + chr2L 3663433 intron CG34340 + chr2L_20_3660001 chr2L_3660001 RAL-235 83 chr2L 3696107 3696114 chr2L 3696189 3696206 4 91 4.5 5.5 5.0 0.7 99 chr2L 3696107 intergenic CG16712 - chr2L 3696156 intergenic CG16712 - chr2L 3696206 intergenic CG16712 - chr2L_4_3695001 chr2L_3695001 RAL-235 84 chr2L 3712600 3712608 chr2L 3714506 3714541 4 1916 17.5 21.5 19.5 0.2 1941 chr2L 3712600 exon CG31955 - chr2L 3713570 5` UTR CG2818 + chr2L 3714541 intron CG2818 + chr2L_4_3710001 chr2L_3710001 RAL-235 85 chr2L 3784700 3784989 chr2L 3785631 3785672 4 807 8.0 6.0 7.0 0.5 972 chr2L 3784700 intergenic CG31960 + chr2L 3785186 exon CG31960 + chr2L 3785672 intergenic CG31960 +,CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-235 86 chr2L 3785680 3785687 chr2L 3785786 3785792 4 106 0.0 3.0 1.5 1.6 112 chr2L 3785680 intergenic CG31958 +,CG31960 + chr2L 3785736 intergenic CG31958 +,CG31960 + chr2L 3785792 5` UTR CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-235 87 chr2L 3844327 3844345 chr2L 3844459 3844471 8 130 6.0 5.0 5.5 1.2 144 chr2L 3844327 intergenic not near genes chr2L 3844399 intergenic not near genes chr2L 3844471 intergenic not near genes chr2L_8_3840001 chr2L_3840001 RAL-235 88 chr2L 3906043 3906055 chr2L 3906188 3906216 5 157 5.0 4.0 4.5 0.9 173 chr2L 3906043 intron fred - chr2L 3906130 intron fred - chr2L 3906216 intron fred - chr2L_5_3905001 chr2L_3905001 RAL-235 89 chr2L 3906060 3906069 chr2L 3906185 3906195 4 128 1.5 3.5 2.5 1.1 135 chr2L 3906060 intron fred - chr2L 3906128 intron fred - chr2L 3906195 intron fred - chr2L_4_3905001 chr2L_3905001 RAL-235 90 chr2L 3911646 3911661 chr2L 3911739 3911746 4 92 9.5 1.5 5.5 0.6 100 chr2L 3911646 intron fred - chr2L 3911696 intron fred - chr2L 3911746 intron fred - chr2L_4_3910001 chr2L_3910001 RAL-235 91 chr2L 3936642 3936655 chr2L 3936742 3936752 5 99 2.0 4.5 3.2 1.2 110 chr2L 3936642 intron fred - chr2L 3936697 intron fred - chr2L 3936752 intron fred - chr2L_5_3935001 chr2L_3935001 RAL-235 92 chr2L 4037781 4037807 chr2L 4037888 4037888 6 101 3.0 5.0 4.0 1.2 107 chr2L 4037781 intron ed + chr2L 4037834 intron ed + chr2L 4037888 intron ed + chr2L_6_4035001 chr2L_4035001 RAL-235 93 chr2L 4074172 4074210 chr2L 4074285 4074323 10 110 3.5 7.0 5.2 1.6 151 chr2L 4074172 intron ed + chr2L 4074248 intron ed + chr2L 4074323 intron,3` UTR ed +,CR44984 - chr2L_10_4070001 chr2L_4070001 RAL-235 94 chr2L 4309448 4309483 chr2L 4309543 4309561 8 94 4.0 3.5 3.8 1.7 113 chr2L 4309448 intron tutl + chr2L 4309504 intron tutl + chr2L 4309561 intron tutl + chr2L_8_4305001 chr2L_4305001 RAL-235 95 chr2L 4601704 4601734 chr2L 4609150 4609194 mdg1 16 7458 2.0 3.5 2.8 4.2 7490 chr2L 4601704 intron dp - chr2L 4605449 intron dp - chr2L 4609194 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-235 96 chr2L 4661825 4661858 chr2L 4669425 4669431 opus 9 7597 1.5 7.5 4.5 1.6 7606 chr2L 4661825 intergenic not near genes chr2L 4665628 intergenic not near genes chr2L 4669431 intergenic not near genes chr2L_9_4665001 chr2L_4665001 RAL-235 97 chr2L 4671210 4671263 chr2L 4671519 4671534 10 292 6.5 5.0 5.8 1.5 324 chr2L 4671210 intergenic not near genes chr2L 4671372 intergenic not near genes chr2L 4671534 intergenic not near genes chr2L_10_4670001 chr2L_4670001 RAL-235 98 chr2L 4756929 4756959 chr2L 4757036 4757040 8 101 2.0 8.0 5.0 1.3 111 chr2L 4756929 intron CG15630 - chr2L 4756984 intron CG15630 - chr2L 4757040 intron CG15630 - chr2L_8_4755001 chr2L_4755001 RAL-235 99 chr2L 4819475 4819513 chr2L 4819618 4819656 7 140 4.0 6.0 5.0 1.2 181 chr2L 4819475 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819656 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-235 100 chr2L 4830570 4830608 chr2L 4830661 4830690 9 85 2.5 2.5 2.5 2.6 120 chr2L 4830570 exon CG2976 - chr2L 4830630 5` UTR CG2976 - chr2L 4830690 5` UTR CG2976 - chr2L_9_4830001 chr2L_4830001 RAL-235 101 chr2L 4858455 4858483 chr2L 4858555 4858591 7 106 7.0 0.5 3.8 1.5 136 chr2L 4858455 intron pog + chr2L 4858523 intron pog + chr2L 4858591 intron pog + chr2L_7_4855001 chr2L_4855001 RAL-235 102 chr2L 4861208 4861254 chr2L 4861314 4861357 12 104 1.5 1.0 1.2 5.5 149 chr2L 4861208 intron pog + chr2L 4861282 intron pog + chr2L 4861357 intron pog + chr2L_12_4860001 chr2L_4860001 RAL-235 103 chr2L 4869469 4869492 chr2L 4869548 4869586 4 90 3.0 3.5 3.2 1.0 117 chr2L 4869469 intron pog + chr2L 4869528 intron pog + chr2L 4869586 intron pog + chr2L_4_4865001 chr2L_4865001 RAL-235 104 chr2L 4896435 4896476 chr2L 4896540 4896588 13 105 4.0 4.5 4.2 2.5 153 chr2L 4896435 intron CG3036 + chr2L 4896512 intron CG3036 + chr2L 4896588 intron CG3036 + chr2L_13_4895001 chr2L_4895001 RAL-235 105 chr2L 4918151 4918198 chr2L 4923244 4923257 jockey 15 5090 5.5 7.0 6.2 2.1 5106 chr2L 4918151 intron hoe1 - chr2L 4920704 intron hoe1 - chr2L 4923257 intron hoe1 - chr2L_15_4920001 chr2L_4920001 RAL-235 106 chr2L 5025113 5025165 chr2L 5025209 5025261 9 95 4.5 0.0 2.2 2.8 148 chr2L 5025113 intron vkg - chr2L 5025187 intron vkg - chr2L 5025261 intron vkg - chr2L_9_5025001 chr2L_5025001 RAL-235 107 chr2L 5085027 5085069 chr2L 5085139 5085167 4 108 0.0 2.5 1.2 1.8 140 chr2L 5085027 intron pgant5 - chr2L 5085097 intron pgant5 - chr2L 5085167 intron pgant5 - chr2L_4_5085001 chr2L_5085001 RAL-235 108 chr2L 5110986 5111023 chr2L 5111084 5111084 5 80 6.5 1.0 3.8 1.0 98 chr2L 5110986 intron Msp300 + chr2L 5111035 intron Msp300 + chr2L 5111084 intron Msp300 + chr2L_5_5110001 chr2L_5110001 RAL-235 109 chr2L 5120955 5121001 chr2L 5121069 5121088 14 106 5.0 5.0 5.0 2.3 133 chr2L 5120955 intron Msp300 + chr2L 5121022 intron Msp300 + chr2L 5121088 intron Msp300 + chr2L_14_5120001 chr2L_5120001 RAL-235 110 chr2L 5342752 5342772 chr2L 5345152 5345172 Doc 7 2400 6.0 7.5 6.8 0.9 2420 chr2L 5342752 intergenic not near genes chr2L 5343962 intergenic not near genes chr2L 5345172 intergenic not near genes chr2L_7_5340001 chr2L_5340001 RAL-235 111 chr2L 5500050 5500078 chr2L 5500141 5500169 5 96 3.0 2.5 2.8 1.3 119 chr2L 5500050 intergenic not near genes chr2L 5500110 intergenic not near genes chr2L 5500169 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-235 112 chr2L 5500818 5500839 chr2L 5500919 5500936 10 98 4.0 1.5 2.8 2.6 118 chr2L 5500818 intergenic not near genes chr2L 5500877 intergenic not near genes chr2L 5500936 intergenic not near genes chr2L_10_5500001 chr2L_5500001 RAL-235 113 chr2L 5508532 5508561 chr2L 5508613 5508652 12 94 3.0 6.5 4.8 2.1 120 chr2L 5508532 intergenic not near genes chr2L 5508592 intergenic not near genes chr2L 5508652 intergenic not near genes chr2L_12_5505001 chr2L_5505001 RAL-235 114 chr2L 5592391 5592397 chr2L 5592491 5592497 6 100 0.5 6.5 3.5 1.3 106 chr2L 5592391 intergenic not near genes chr2L 5592444 intergenic not near genes chr2L 5592497 intergenic not near genes chr2L_6_5590001 chr2L_5590001 RAL-235 115 chr2L 5657437 5657448 chr2L 5657575 5657592 5 144 3.5 1.0 2.2 1.6 155 chr2L 5657437 intron CG31646 - chr2L 5657514 intron CG31646 - chr2L 5657592 intron CG31646 - chr2L_5_5655001 chr2L_5655001 RAL-235 116 chr2L 5672151 5672196 chr2L 5672252 5672297 9 98 4.0 7.5 5.8 1.3 146 chr2L 5672151 intergenic not near genes chr2L 5672224 intergenic not near genes chr2L 5672297 intergenic not near genes chr2L_9_5670001 chr2L_5670001 RAL-235 117 chr2L 5695842 5695891 chr2L 5695954 5695992 13 110 6.5 7.0 6.8 1.7 150 chr2L 5695842 intergenic not near genes chr2L 5695917 intergenic not near genes chr2L 5695992 intergenic not near genes chr2L_13_5695001 chr2L_5695001 RAL-235 118 chr2L 5745263 5745314 chr2L 5745361 5745412 11 94 4.5 6.0 5.2 1.8 149 chr2L 5745263 intron CG11030 + chr2L 5745338 intron CG11030 + chr2L 5745412 intron CG11030 + chr2L_11_5745001 chr2L_5745001 RAL-235 119 chr2L 5806034 5806074 chr2L 5806134 5806169 16 99 2.5 9.0 5.8 2.4 135 chr2L 5806034 intron CG11034 + chr2L 5806102 intron CG11034 + chr2L 5806169 intron CG11034 + chr2L_16_5805001 chr2L_5805001 RAL-235 120 chr2L 5814682 5814714 chr2L 5814785 5814817 8 102 5.0 4.0 4.5 1.5 135 chr2L 5814682 intergenic not near genes chr2L 5814750 intergenic not near genes chr2L 5814817 intergenic not near genes chr2L_8_5810001 chr2L_5810001 RAL-235 121 chr2L 5870456 5870507 chr2L 5870548 5870603 12 89 4.0 4.5 4.2 2.3 147 chr2L 5870456 intron rau - chr2L 5870530 intron rau - chr2L 5870603 intron rau - chr2L_12_5870001 chr2L_5870001 RAL-235 122 chr2L 5904445 5904474 chr2L 5904545 5904574 9 100 2.0 0.0 1.0 4.5 129 chr2L 5904445 exon CG9021 - chr2L 5904510 intron CG9021 - chr2L 5904574 intron CG9021 - chr2L_9_5900001 chr2L_5900001 RAL-235 123 chr2L 5926251 5926451 chr2L 5926351 5926559 8 128 0.0 0.0 0.0 8.0 308 chr2L 5926251 intron dsf + chr2L 5926405 intron dsf + chr2L 5926559 intron dsf + chr2L_8_5925001 chr2L_5925001 RAL-235 124 chr2L 5935984 5936025 chr2L 5936092 5936120 6 104 0.5 0.0 0.2 5.0 136 chr2L 5935984 intron dsf + chr2L 5936052 intron dsf + chr2L 5936120 intron dsf + chr2L_6_5935001 chr2L_5935001 RAL-235 125 chr2L 5942043 5942047 chr2L 5942131 5942154 5 95 6.0 5.0 5.5 0.8 111 chr2L 5942043 5` UTR CR45289 + chr2L 5942098 5` UTR CR45289 + chr2L 5942154 5` UTR CR45289 + chr2L_5_5940001 chr2L_5940001 RAL-235 126 chr2L 6025540 6025581 chr2L 6025640 6025688 14 97 8.5 7.0 7.8 1.6 148 chr2L 6025540 intergenic CG9109 - chr2L 6025614 intergenic CG9109 - chr2L 6025688 intergenic CG9109 - chr2L_14_6025001 chr2L_6025001 RAL-235 127 chr2L 6029272 6029289 chr2L 6029378 6029396 7 105 4.0 6.5 5.2 1.1 124 chr2L 6029272 intron CG9109 - chr2L 6029334 intron CG9109 - chr2L 6029396 intron CG9109 - chr2L_7_6025001 chr2L_6025001 RAL-235 128 chr2L 6111235 6111266 chr2L 6111434 6111472 7 201 5.5 0.5 3.0 1.8 237 chr2L 6111235 intron stai + chr2L 6111354 intron stai + chr2L 6111472 intron stai + chr2L_7_6110001 chr2L_6110001 RAL-235 129 chr2L 6136535 6136579 chr2L 6136652 6136695 5 111 2.5 3.0 2.8 1.3 160 chr2L 6136535 intergenic not near genes chr2L 6136615 intergenic not near genes chr2L 6136695 intergenic not near genes chr2L_5_6135001 chr2L_6135001 RAL-235 130 chr2L 6283925 6283939 chr2L 6284055 6284067 4 129 3.0 2.0 2.5 1.1 142 chr2L 6283925 intron Ddr + chr2L 6283996 intron Ddr + chr2L 6284067 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-235 131 chr2L 6363129 6363179 chr2L 6366071 6366100 Burdock 17 2933 3.5 2.0 2.8 4.5 2971 chr2L 6363129 intergenic not near genes chr2L 6364614 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_17_6360001 chr2L_6360001 RAL-235 132 chr2L 6426841 6426885 chr2L 6445119 6445165 roo 20 18277 4.0 3.5 3.8 4.2 18324 chr2L 6426841 3` UTR CG9527 - chr2L 6436003 intron CG9527 - chr2L 6445165 exon CG9527 - chr2L_20_6435001 chr2L_6435001 RAL-235 133 chr2L 6544355 6544389 chr2L 6544462 6544501 17 107 8.0 3.0 5.5 2.6 146 chr2L 6544355 intron eya - chr2L 6544428 intron eya - chr2L 6544501 intron eya - chr2L_17_6540001 chr2L_6540001 RAL-235 134 chr2L 6564826 6564863 chr2L 6564939 6564950 9 107 4.0 1.0 2.5 2.6 124 chr2L 6564826 3` UTR CG13766 - chr2L 6564888 3` UTR CG13766 - chr2L 6564950 3` UTR CG13766 - chr2L_9_6560001 chr2L_6560001 RAL-235 135 chr2L 6598097 6598151 chr2L 6599074 6599128 15 966 3.5 4.5 4.0 3.0 1031 chr2L 6598097 intron CG11319 - chr2L 6598612 intron CG11319 - chr2L 6599128 intron CG11319 - chr2L_15_6595001 chr2L_6595001 RAL-235 136 chr2L 6724533 6724543 chr2L 6724622 6724646 8 101 1.0 3.0 2.0 2.7 113 chr2L 6724533 intron Liprin-alpha + chr2L 6724590 intron Liprin-alpha + chr2L 6724646 intron Liprin-alpha + chr2L_8_6720001 chr2L_6720001 RAL-235 137 chr2L 6724545 6724557 chr2L 6724615 6724660 5 88 0.5 2.5 1.5 2.0 115 chr2L 6724545 intron Liprin-alpha + chr2L 6724602 intron Liprin-alpha + chr2L 6724660 intron Liprin-alpha + chr2L_5_6720001 chr2L_6720001 RAL-235 138 chr2L 6744552 6744596 chr2L 6744653 6744678 8 99 3.0 6.0 4.5 1.5 126 chr2L 6744552 intron CG11221 + chr2L 6744615 intron CG11221 + chr2L 6744678 intron,3` UTR CG11221 +,CG31910 - chr2L_8_6740001 chr2L_6740001 RAL-235 139 chr2L 6804258 6804299 chr2L 6804356 6804397 10 97 1.0 3.5 2.2 3.1 139 chr2L 6804258 3` UTR CG11236 + chr2L 6804328 3` UTR,3` UTR CG11236 +,CG17375 - chr2L 6804397 3` UTR CG17375 - chr2L_10_6800001 chr2L_6800001 RAL-235 140 chr2L 6876756 6876809 chr2L 6882967 6883006 diver 5 6188 3.5 5.5 4.5 0.9 6250 chr2L 6876756 intron Nlg2 + chr2L 6879881 intron Nlg2 + chr2L 6883006 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-235 141 chr2L 6891428 6891442 chr2L 6891543 6891560 6 116 7.0 4.0 5.5 0.9 132 chr2L 6891428 intron Nlg2 + chr2L 6891494 intron Nlg2 + chr2L 6891560 intron Nlg2 + chr2L_6_6890001 chr2L_6890001 RAL-235 142 chr2L 6891444 6891468 chr2L 6891542 6891581 6 111 2.0 4.0 3.0 1.5 137 chr2L 6891444 intron Nlg2 + chr2L 6891512 intron Nlg2 + chr2L 6891581 intron Nlg2 + chr2L_6_6890001 chr2L_6890001 RAL-235 143 chr2L 6969266 6969302 chr2L 6969358 6969401 11 89 3.5 5.0 4.2 2.1 135 chr2L 6969266 3` UTR snRNP-U1-70K - chr2L 6969334 3` UTR snRNP-U1-70K - chr2L 6969401 3` UTR snRNP-U1-70K - chr2L_11_6965001 chr2L_6965001 RAL-235 144 chr2L 7005210 7005254 chr2L 7005326 7005354 10 110 3.0 7.0 5.0 1.7 144 chr2L 7005210 intron uif - chr2L 7005282 intron uif - chr2L 7005354 intron uif - chr2L_10_7005001 chr2L_7005001 RAL-235 145 chr2L 7096137 7096174 chr2L 7096284 7096321 7 146 6.0 2.0 4.0 1.4 184 chr2L 7096137 intergenic not near genes chr2L 7096229 intergenic not near genes chr2L 7096321 intergenic not near genes chr2L_7_7095001 chr2L_7095001 RAL-235 146 chr2L 7126839 7126877 chr2L 7126938 7126976 12 97 4.0 0.0 2.0 4.0 137 chr2L 7126839 intron Pvf3 - chr2L 7126908 intron Pvf3 - chr2L 7126976 intron Pvf3 - chr2L_12_7125001 chr2L_7125001 RAL-235 147 chr2L 7140859 7140877 chr2L 7141312 7141356 4 468 4.0 7.0 5.5 0.6 497 chr2L 7140859 intron Pvf3 - chr2L 7141108 intron Pvf3 - chr2L 7141356 intron Pvf3 - chr2L_4_7140001 chr2L_7140001 RAL-235 148 chr2L 7151828 7151852 chr2L 7152141 7152167 8 313 4.0 6.0 5.0 1.3 339 chr2L 7151828 intron Pvf3 - chr2L 7151998 intron Pvf3 - chr2L 7152167 intron Pvf3 - chr2L_8_7150001 chr2L_7150001 RAL-235 149 chr2L 7254522 7254544 chr2L 7254614 7254642 11 97 0.0 4.5 2.2 3.4 120 chr2L 7254522 intergenic not near genes chr2L 7254582 intergenic not near genes chr2L 7254642 intergenic not near genes chr2L_11_7250001 chr2L_7250001 RAL-235 150 chr2L 7325904 7325950 chr2L 7326006 7326024 5 93 2.0 2.0 2.0 1.7 120 chr2L 7325904 intergenic not near genes chr2L 7325964 intergenic not near genes chr2L 7326024 intergenic not near genes chr2L_5_7325001 chr2L_7325001 RAL-235 151 chr2L 7326467 7326489 chr2L 7326605 7326612 4 132 3.0 2.5 2.8 1.1 145 chr2L 7326467 intergenic not near genes chr2L 7326540 intergenic not near genes chr2L 7326612 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-235 152 chr2L 7330250 7330289 chr2L 7330349 7330382 12 97 3.0 2.5 2.8 3.2 132 chr2L 7330250 intergenic not near genes chr2L 7330316 intergenic not near genes chr2L 7330382 intergenic not near genes chr2L_12_7330001 chr2L_7330001 RAL-235 153 chr2L 7335185 7335231 chr2L 7335302 7335320 12 112 4.5 4.0 4.2 2.3 135 chr2L 7335185 intron Wnt6 + chr2L 7335252 intron Wnt6 + chr2L 7335320 intron Wnt6 + chr2L_12_7335001 chr2L_7335001 RAL-235 154 chr2L 7489593 7489598 chr2L 7489717 7489724 5 125 4.0 0.0 2.0 1.7 131 chr2L 7489593 intron Ziz - chr2L 7489658 intron Ziz - chr2L 7489724 intron Ziz - chr2L_5_7485001 chr2L_7485001 RAL-235 155 chr2L 7519152 7519187 chr2L 7521458 7521493 12 2293 27.5 25.5 26.5 0.4 2341 chr2L 7519152 intron RapGAP1 - chr2L 7520322 intron RapGAP1 - chr2L 7521493 intron RapGAP1 - chr2L_12_7520001 chr2L_7520001 RAL-235 156 chr2L 7555710 7555762 chr2L 7555814 7555856 16 95 4.0 7.0 5.5 2.5 146 chr2L 7555710 intron RapGAP1 - chr2L 7555783 intron RapGAP1 - chr2L 7555856 intron RapGAP1 - chr2L_16_7555001 chr2L_7555001 RAL-235 157 chr2L 7564558 7564600 chr2L 7564731 7564781 8 180 2.5 3.0 2.8 2.1 223 chr2L 7564558 intron RapGAP1 - chr2L 7564670 intron RapGAP1 - chr2L 7564781 intron RapGAP1 - chr2L_8_7560001 chr2L_7560001 RAL-235 158 chr2L 7628957 7629006 chr2L 7629076 7629127 17 120 4.0 4.5 4.2 3.3 170 chr2L 7628957 intergenic not near genes chr2L 7629042 intergenic not near genes chr2L 7629127 intergenic not near genes chr2L_17_7625001 chr2L_7625001 RAL-235 159 chr2L 7664031 7664041 chr2L 7664148 7664158 4 117 10.0 4.5 7.2 0.5 127 chr2L 7664031 intron Slob - chr2L 7664094 intron Slob - chr2L 7664158 intron Slob - chr2L_4_7660001 chr2L_7660001 RAL-235 160 chr2L 7704522 7704564 chr2L 7704618 7704660 13 92 3.0 5.5 4.2 2.5 138 chr2L 7704522 intron Tep3 + chr2L 7704591 intron Tep3 + chr2L 7704660 intron Tep3 + chr2L_13_7700001 chr2L_7700001 RAL-235 161 chr2L 7861290 7861300 chr2L 7861413 7861419 5 122 8.5 5.5 7.0 0.6 129 chr2L 7861290 intergenic TwdlE - chr2L 7861354 intergenic not near genes chr2L 7861419 intergenic not near genes chr2L_5_7860001 chr2L_7860001 RAL-235 162 chr2L 7861302 7861335 chr2L 7861410 7861459 12 117 5.5 4.5 5.0 2.0 157 chr2L 7861302 intergenic TwdlE - chr2L 7861380 intergenic not near genes chr2L 7861459 intergenic not near genes chr2L_12_7860001 chr2L_7860001 RAL-235 163 chr2L 7867551 7867561 chr2L 7867665 7867675 6 113 11.0 7.0 9.0 0.6 124 chr2L 7867551 intron Proc - chr2L 7867613 intron Proc - chr2L 7867675 intron Proc - chr2L_6_7865001 chr2L_7865001 RAL-235 164 chr2L 7867565 7867599 chr2L 7867659 7867713 7 107 5.5 4.0 4.8 1.2 148 chr2L 7867565 intron Proc - chr2L 7867639 intron Proc - chr2L 7867713 intron Proc - chr2L_7_7865001 chr2L_7865001 RAL-235 165 chr2L 7959030 7959059 chr2L 7960453 7960490 pogo 13 1425 4.5 5.5 5.0 2.2 1460 chr2L 7959030 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960490 intron Snoo - chr2L_13_7955001 chr2L_7955001 RAL-235 166 chr2L 8002575 8002588 chr2L 8002720 8002729 4 144 5.5 0.0 2.8 1.1 154 chr2L 8002575 intron Wwox - chr2L 8002652 intron Wwox - chr2L 8002729 intron Wwox - chr2L_4_8000001 chr2L_8000001 RAL-235 167 chr2L 8003034 8003117 chr2L 8003168 8003223 5 117 0.0 3.0 1.5 2.0 189 chr2L 8003034 intron Wwox - chr2L 8003128 intron Wwox - chr2L 8003223 intron Wwox - chr2L_5_8000001 chr2L_8000001 RAL-235 168 chr2L 8013602 8013623 chr2L 8018820 8018836 copia 8 5218 7.5 0.0 3.8 1.7 5234 chr2L 8013602 intron Tg + chr2L 8016219 intron Tg + chr2L 8018836 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-235 169 chr2L 8018815 8018826 chr2L 8023619 8023630 Doc 7 4803 0.0 8.0 4.0 1.4 4815 chr2L 8018815 intron Tg + chr2L 8021222 intron Tg + chr2L 8023630 intron Tg + chr2L_7_8020001 chr2L_8020001 RAL-235 170 chr2L 8044080 8044129 chr2L 8044174 8044196 14 90 3.0 2.5 2.8 3.7 116 chr2L 8044080 intron CG7466 + chr2L 8044138 intron CG7466 + chr2L 8044196 intron CG7466 + chr2L_14_8040001 chr2L_8040001 RAL-235 171 chr2L 8108905 8108934 chr2L 8109009 8109050 14 115 4.5 3.5 4.0 2.8 145 chr2L 8108905 3` UTR Bsg + chr2L 8108978 3` UTR Bsg + chr2L 8109050 3` UTR Bsg + chr2L_14_8105001 chr2L_8105001 RAL-235 172 chr2L 8165100 8165121 chr2L 8165203 8165224 5 103 0.5 8.0 4.2 1.0 124 chr2L 8165100 intron Piezo + chr2L 8165162 intron Piezo + chr2L 8165224 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-235 173 chr2L 8165123 8165139 chr2L 8165201 8165229 9 93 0.5 7.0 3.8 1.9 106 chr2L 8165123 intron Piezo + chr2L 8165176 intron Piezo + chr2L 8165229 intron Piezo + chr2L_9_8165001 chr2L_8165001 RAL-235 174 chr2L 8167131 8167164 chr2L 8167242 8167247 4 96 5.5 2.0 3.8 0.8 116 chr2L 8167131 intron Piezo + chr2L 8167189 intron Piezo + chr2L 8167247 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-235 175 chr2L 8244737 8244749 chr2L 8244859 8244888 5 131 0.5 4.5 2.5 1.4 151 chr2L 8244737 intron CG8086 - chr2L 8244812 intron CG8086 - chr2L 8244888 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-235 176 chr2L 8336931 8336941 chr2L 8337021 8337035 4 95 0.0 4.5 2.2 1.2 104 chr2L 8336931 intergenic not near genes chr2L 8336983 intergenic not near genes chr2L 8337035 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-235 177 chr2L 8452404 8452450 chr2L 8461595 8461641 roo 16 9188 7.0 6.0 6.5 2.1 9237 chr2L 8452404 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461641 intron fu12 - chr2L_16_8455001 chr2L_8455001 RAL-235 178 chr2L 8461820 8461879 chr2L 8461921 8461969 13 94 4.0 4.5 4.2 2.5 149 chr2L 8461820 intron fu12 - chr2L 8461894 intron fu12 - chr2L 8461969 intron fu12 - chr2L_13_8460001 chr2L_8460001 RAL-235 179 chr2L 8594446 8594495 chr2L 8601520 8601569 297 10 7072 4.0 2.0 3.0 2.5 7123 chr2L 8594446 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601569 intron Sema-1a + chr2L_10_8595001 chr2L_8595001 RAL-235 180 chr2L 8604965 8604996 chr2L 8605068 8605098 8 107 5.0 4.0 4.5 1.5 133 chr2L 8604965 intron Sema-1a + chr2L 8605032 intron Sema-1a + chr2L 8605098 intron Sema-1a + chr2L_8_8605001 chr2L_8605001 RAL-235 181 chr2L 8723099 8723143 chr2L 8731496 8731540 Tirant 15 8394 2.0 3.0 2.5 4.3 8441 chr2L 8723099 intron raw - chr2L 8727320 intron raw - chr2L 8731540 intron raw - chr2L_15_8725001 chr2L_8725001 RAL-235 182 chr2L 8799791 8799832 chr2L 8799917 8799948 5 118 4.5 3.5 4.0 1.0 157 chr2L 8799791 intergenic not near genes chr2L 8799870 intergenic not near genes chr2L 8799948 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-235 183 chr2L 8803161 8803202 chr2L 8803270 8803311 8 100 1.5 3.5 2.5 2.3 150 chr2L 8803161 intergenic not near genes chr2L 8803236 intergenic not near genes chr2L 8803311 intergenic not near genes chr2L_8_8800001 chr2L_8800001 RAL-235 184 chr2L 8820918 8820954 chr2L 8821017 8821052 15 97 5.0 4.5 4.8 2.6 134 chr2L 8820918 intergenic not near genes chr2L 8820985 intergenic not near genes chr2L 8821052 intergenic not near genes chr2L_15_8820001 chr2L_8820001 RAL-235 185 chr2L 8976202 8976251 chr2L 8976314 8976341 5 94 0.0 0.5 0.2 4.2 139 chr2L 8976202 intergenic not near genes chr2L 8976272 intergenic not near genes chr2L 8976341 intergenic not near genes chr2L_5_8975001 chr2L_8975001 RAL-235 186 chr2L 8980447 8980463 chr2L 8980553 8980554 6 105 9.0 0.0 4.5 1.1 107 chr2L 8980447 intron CG13101 - chr2L 8980500 intron CG13101 - chr2L 8980554 intron CG13101 - chr2L_6_8980001 chr2L_8980001 RAL-235 187 chr2L 9000259 9000309 chr2L 9007789 9007839 roo 16 7527 7.0 2.0 4.5 2.9 7580 chr2L 9000259 intergenic Try29F + chr2L 9004049 intergenic not near genes chr2L 9007839 intergenic not near genes chr2L_16_9000001 chr2L_9000001 RAL-235 188 chr2L 9007794 9007824 chr2L 9007893 9007901 9 95 2.0 0.0 1.0 4.5 107 chr2L 9007794 intergenic not near genes chr2L 9007848 intergenic not near genes chr2L 9007901 intergenic not near genes chr2L_9_9005001 chr2L_9005001 RAL-235 189 chr2L 9023135 9023187 chr2L 9023252 9023304 8 101 5.0 3.0 4.0 1.6 169 chr2L 9023135 intergenic not near genes chr2L 9023220 intergenic not near genes chr2L 9023304 intergenic not near genes chr2L_8_9020001 chr2L_9020001 RAL-235 190 chr2L 9027965 9027982 chr2L 9028069 9028085 8 104 3.5 0.0 1.8 2.9 120 chr2L 9027965 intron,intron CG9582 -,CR44352 - chr2L 9028025 intron,intron CG9582 -,CR44352 - chr2L 9028085 intron,intron CG9582 -,CR44352 - chr2L_8_9025001 chr2L_9025001 RAL-235 191 chr2L 9040030 9040061 chr2L 9040122 9040168 11 104 3.0 4.5 3.8 2.3 138 chr2L 9040030 intergenic not near genes chr2L 9040099 intergenic not near genes chr2L 9040168 intergenic not near genes chr2L_11_9040001 chr2L_9040001 RAL-235 192 chr2L 9053390 9053429 chr2L 9053644 9053673 11 249 2.0 0.0 1.0 5.5 283 chr2L 9053390 exon CG31708 - chr2L 9053532 intron CG31708 - chr2L 9053673 intron CG31708 - chr2L_11_9050001 chr2L_9050001 RAL-235 193 chr2L 9113783 9113809 chr2L 9113913 9113939 13 129 5.5 1.0 3.2 3.1 156 chr2L 9113783 intergenic Or30a + chr2L 9113861 intergenic not near genes chr2L 9113939 intergenic not near genes chr2L_13_9110001 chr2L_9110001 RAL-235 194 chr2L 9122165 9122209 chr2L 9122327 9122371 8 160 3.0 4.5 3.8 1.7 206 chr2L 9122165 intergenic CR44616 - chr2L 9122268 intergenic CR44616 - chr2L 9122371 intergenic CR44616 - chr2L_8_9120001 chr2L_9120001 RAL-235 195 chr2L 9152145 9152177 chr2L 9152231 9152267 5 84 0.5 3.0 1.8 1.8 122 chr2L 9152145 intron CG32982 + chr2L 9152206 intron CG32982 + chr2L 9152267 intron CG32982 + chr2L_5_9150001 chr2L_9150001 RAL-235 196 chr2L 9154002 9154052 chr2L 9154100 9154151 12 96 0.5 2.5 1.5 4.8 149 chr2L 9154002 intron CG32982 + chr2L 9154076 intron CG32982 + chr2L 9154151 intron CG32982 + chr2L_12_9150001 chr2L_9150001 RAL-235 197 chr2L 9217957 9218003 chr2L 9222764 9222785 Doc 16 4799 4.5 9.0 6.8 2.1 4828 chr2L 9217957 intron tai + chr2L 9220371 intron tai + chr2L 9222785 intron tai + chr2L_16_9220001 chr2L_9220001 RAL-235 198 chr2L 9225855 9225878 chr2L 9225941 9225988 7 106 3.0 6.0 4.5 1.3 133 chr2L 9225855 intron tai + chr2L 9225922 intron tai + chr2L 9225988 intron tai + chr2L_7_9225001 chr2L_9225001 RAL-235 199 chr2L 9380226 9380248 chr2L 9380341 9380363 5 115 2.0 2.5 2.2 1.6 137 chr2L 9380226 exon Shawl - chr2L 9380294 intron Shawl - chr2L 9380363 intron Shawl - chr2L_5_9380001 chr2L_9380001 RAL-235 200 chr2L 9407888 9407902 chr2L 9407990 9408003 7 101 3.5 6.5 5.0 1.2 115 chr2L 9407888 intron Shawl - chr2L 9407946 intron Shawl - chr2L 9408003 intron Shawl - chr2L_7_9405001 chr2L_9405001 RAL-235 201 chr2L 9448897 9448920 chr2L 9448994 9449022 8 101 0.0 2.0 1.0 4.0 125 chr2L 9448897 intron numb + chr2L 9448960 intron numb + chr2L 9449022 intron numb + chr2L_8_9445001 chr2L_9445001 RAL-235 202 chr2L 9454958 9455004 chr2L 9455080 9455116 18 115 3.5 2.5 3.0 4.5 158 chr2L 9454958 intron numb + chr2L 9455037 intron numb + chr2L 9455116 intron numb + chr2L_18_9455001 chr2L_9455001 RAL-235 203 chr2L 9464839 9464966 chr2L 9464936 9465072 8 97 0.5 0.5 0.5 5.3 233 chr2L 9464839 intergenic not near genes chr2L 9464956 intergenic not near genes chr2L 9465072 intergenic not near genes chr2L_8_9460001 chr2L_9460001 RAL-235 204 chr2L 9505166 9505201 chr2L 9505608 9505608 7 440 5.5 1.5 3.5 1.6 442 chr2L 9505166 intron CG33298 + chr2L 9505387 intron CG33298 + chr2L 9505608 intron CG33298 + chr2L_7_9505001 chr2L_9505001 RAL-235 205 chr2L 9530769 9530801 chr2L 9530859 9530904 6 87 2.0 4.0 3.0 1.5 135 chr2L 9530769 intron Oatp30B + chr2L 9530836 intron Oatp30B + chr2L 9530904 intron Oatp30B + chr2L_6_9530001 chr2L_9530001 RAL-235 206 chr2L 9719763 9719780 chr2L 9719861 9719882 4 102 0.0 3.0 1.5 1.6 119 chr2L 9719763 intron Nckx30C - chr2L 9719822 intron Nckx30C - chr2L 9719882 intron Nckx30C - chr2L_4_9715001 chr2L_9715001 RAL-235 207 chr2L 9730976 9731005 chr2L 9731059 9731108 12 98 5.5 5.0 5.2 1.9 132 chr2L 9730976 intron Nckx30C - chr2L 9731042 intron Nckx30C - chr2L 9731108 intron Nckx30C - chr2L_12_9730001 chr2L_9730001 RAL-235 208 chr2L 9837438 9837445 chr2L 9837510 9837543 4 92 2.0 4.0 3.0 1.0 105 chr2L 9837438 intron nAChRalpha6 - chr2L 9837490 intron nAChRalpha6 - chr2L 9837543 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-235 209 chr2L 9973714 9973759 chr2L 9980846 9980897 HMS-Beagle 12 7131 3.5 3.0 3.2 2.9 7183 chr2L 9973714 intergenic not near genes chr2L 9977306 intergenic not near genes chr2L 9980897 intergenic not near genes chr2L_12_9975001 chr2L_9975001 RAL-235 210 chr2L 9982205 9982232 chr2L 9982310 9982354 8 118 0.0 6.5 3.2 1.9 149 chr2L 9982205 intergenic not near genes chr2L 9982280 intergenic not near genes chr2L 9982354 intergenic not near genes chr2L_8_9980001 chr2L_9980001 RAL-235 211 chr2L 9986344 9986384 chr2L 9986445 9986458 7 95 1.5 2.0 1.8 2.5 114 chr2L 9986344 intron bib + chr2L 9986401 intron bib + chr2L 9986458 intron bib + chr2L_7_9985001 chr2L_9985001 RAL-235 212 chr2L 10051710 10051742 chr2L 10051809 10051830 4 92 3.5 2.5 3.0 1.0 120 chr2L 10051710 5` UTR CR44874 + chr2L 10051770 5` UTR CR44874 + chr2L 10051830 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-235 213 chr2L 10156300 10156339 chr2L 10163790 10163824 blood 7 7478 8.0 1.5 4.8 1.2 7524 chr2L 10156300 intron,3` UTR CG44153 -,CG4839 + chr2L 10160062 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-235 214 chr2L 10191924 10191933 chr2L 10192016 10192024 4 94 4.0 8.0 6.0 0.6 100 chr2L 10191924 intron Sur - chr2L 10191974 intron Sur - chr2L 10192024 intron Sur - chr2L_4_10190001 chr2L_10190001 RAL-235 215 chr2L 10209828 10209860 chr2L 10209925 10209938 9 93 4.0 0.0 2.0 3.0 110 chr2L 10209828 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209883 3` UTR CG5727 - chr2L 10209938 3` UTR CG5727 - chr2L_9_10205001 chr2L_10205001 RAL-235 216 chr2L 10247272 10247325 chr2L 10247385 10247436 20 111 3.0 4.5 3.8 4.2 164 chr2L 10247272 intergenic chico -,bsk - chr2L 10247354 intergenic bsk -,chico - chr2L 10247436 intergenic bsk -,chico - chr2L_20_10245001 chr2L_10245001 RAL-235 217 chr2L 10276185 10276221 chr2L 10276283 10276319 9 96 2.5 6.0 4.2 1.7 134 chr2L 10276185 intron Utx - chr2L 10276252 intron Utx - chr2L 10276319 intron Utx - chr2L_9_10275001 chr2L_10275001 RAL-235 218 chr2L 10277996 10278044 chr2L 10278096 10278124 19 93 6.5 5.0 5.8 2.8 128 chr2L 10277996 intron Utx - chr2L 10278060 intron Utx - chr2L 10278124 intron Utx - chr2L_19_10275001 chr2L_10275001 RAL-235 219 chr2L 10294159 10294196 chr2L 10294255 10294280 7 92 1.5 2.5 2.0 2.3 121 chr2L 10294159 intron Hand - chr2L 10294220 intron Hand - chr2L 10294280 intron Hand - chr2L_7_10290001 chr2L_10290001 RAL-235 220 chr2L 10294657 10294683 chr2L 10294762 10294789 6 106 1.5 1.5 1.5 2.4 132 chr2L 10294657 intron Hand - chr2L 10294723 intron Hand - chr2L 10294789 intron Hand - chr2L_6_10290001 chr2L_10290001 RAL-235 221 chr2L 10458210 10458215 chr2L 10458311 10458331 4 112 0.0 4.5 2.2 1.2 121 chr2L 10458210 intron LM408 + chr2L 10458270 intron LM408 + chr2L 10458331 intron LM408 + chr2L_4_10455001 chr2L_10455001 RAL-235 222 chr2L 10474365 10474403 chr2L 10474465 10474473 9 90 7.0 3.0 5.0 1.5 108 chr2L 10474365 intergenic RluA-1 - chr2L 10474419 intergenic RluA-1 - chr2L 10474473 intergenic RluA-1 - chr2L_9_10470001 chr2L_10470001 RAL-235 223 chr2L 10506013 10506043 chr2L 10506088 10506094 9 80 2.0 2.5 2.2 2.8 81 chr2L 10506013 exon Myo31DF - chr2L 10506054 5` UTR Myo31DF - chr2L 10506094 5` UTR Myo31DF - chr2L_9_10505001 chr2L_10505001 RAL-235 224 chr2L 10515345 10515388 chr2L 10515453 10515456 26 108 5.0 2.0 3.5 5.8 111 chr2L 10515345 intron,intron CG45083 -,Fatp - chr2L 10515400 intron,intron CG45083 -,Fatp - chr2L 10515456 intron,intron CG45083 -,Fatp - chr2L_26_10515001 chr2L_10515001 RAL-235 225 chr2L 10516931 10516966 chr2L 10517038 10517080 13 109 5.0 2.0 3.5 2.9 149 chr2L 10516931 intron,intron CG45083 -,Fatp - chr2L 10517006 3` UTR,5` UTR CG45083 -,Fatp - chr2L 10517080 exon,5` UTR CG45083 -,Fatp - chr2L_13_10515001 chr2L_10515001 RAL-235 226 chr2L 10531607 10531611 chr2L 10531719 10531723 4 112 0.0 10.5 5.2 0.6 116 chr2L 10531607 3` UTR Lip4 + chr2L 10531665 3` UTR Lip4 + chr2L 10531723 3` UTR Lip4 + chr2L_4_10530001 chr2L_10530001 RAL-235 227 chr2L 10531613 10531626 chr2L 10531715 10531732 7 109 0.0 10.5 5.2 1.1 119 chr2L 10531613 3` UTR Lip4 + chr2L 10531672 3` UTR Lip4 + chr2L 10531732 3` UTR Lip4 + chr2L_7_10530001 chr2L_10530001 RAL-235 228 chr2L 10563891 10563907 chr2L 10564004 10564014 5 111 5.0 1.5 3.2 1.2 123 chr2L 10563891 intron Trim9 + chr2L 10563952 intron Trim9 + chr2L 10564014 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-235 229 chr2L 10580773 10580824 chr2L 10580871 10580879 7 91 1.5 2.5 2.0 2.3 106 chr2L 10580773 intron Trim9 + chr2L 10580826 intron Trim9 + chr2L 10580879 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-235 230 chr2L 10592825 10592874 chr2L 10600506 10600546 opus 15 7675 2.0 6.0 4.0 3.0 7721 chr2L 10592825 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600546 intron Trim9 + chr2L_15_10595001 chr2L_10595001 RAL-235 231 chr2L 10604175 10604218 chr2L 10604279 10604314 9 99 5.5 0.0 2.8 2.4 139 chr2L 10604175 intron Trim9 + chr2L 10604244 intron Trim9 + chr2L 10604314 intron Trim9 + chr2L_9_10600001 chr2L_10600001 RAL-235 232 chr2L 10612798 10612829 chr2L 10612895 10612909 5 88 7.5 3.5 5.5 0.8 111 chr2L 10612798 intron Trim9 + chr2L 10612854 intron Trim9 + chr2L 10612909 intron Trim9 + chr2L_5_10610001 chr2L_10610001 RAL-235 233 chr2L 10688533 10688574 chr2L 10688619 10688670 11 94 3.5 3.0 3.2 2.6 137 chr2L 10688533 intergenic CG7294 - chr2L 10688602 intergenic CG7294 - chr2L 10688670 intergenic CG7294 - chr2L_11_10685001 chr2L_10685001 RAL-235 234 chr2L 10721275 10721310 chr2L 10721374 10721379 12 94 2.5 4.5 3.5 2.7 104 chr2L 10721275 intergenic not near genes chr2L 10721327 intergenic not near genes chr2L 10721379 intergenic not near genes chr2L_12_10720001 chr2L_10720001 RAL-235 235 chr2L 10721883 10721901 chr2L 10721948 10721996 5 90 0.5 3.5 2.0 1.7 113 chr2L 10721883 intergenic not near genes chr2L 10721940 intergenic not near genes chr2L 10721996 intergenic not near genes chr2L_5_10720001 chr2L_10720001 RAL-235 236 chr2L 10762394 10762421 chr2L 10762491 10762518 8 93 3.0 2.5 2.8 2.1 124 chr2L 10762394 intron CG6495 + chr2L 10762456 intron CG6495 + chr2L 10762518 intron CG6495 + chr2L_8_10760001 chr2L_10760001 RAL-235 237 chr2L 10777208 10777241 chr2L 10777339 10777369 8 128 9.0 0.5 4.8 1.4 161 chr2L 10777208 intron CG31869 - chr2L 10777288 intron CG31869 - chr2L 10777369 intron CG31869 - chr2L_8_10775001 chr2L_10775001 RAL-235 238 chr2L 10787999 10788030 chr2L 10788091 10788126 6 95 0.0 7.5 3.8 1.2 127 chr2L 10787999 intron CG31869 - chr2L 10788062 intron CG31869 - chr2L 10788126 intron CG31869 - chr2L_6_10785001 chr2L_10785001 RAL-235 239 chr2L 10789674 10789722 chr2L 10789799 10789845 12 120 4.0 3.5 3.8 2.5 171 chr2L 10789674 intron CG31869 - chr2L 10789760 intron CG31869 - chr2L 10789845 intron CG31869 - chr2L_12_10785001 chr2L_10785001 RAL-235 240 chr2L 10862858 10862868 chr2L 10864464 10864481 Rt1c 4 1620 1.5 4.5 3.0 1.0 1623 chr2L 10862858 3` UTR CR43807 - chr2L 10863670 intron CR43807 - chr2L 10864481 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-235 241 chr2L 10873037 10873065 chr2L 10873137 10873153 10 97 6.0 3.5 4.8 1.7 116 chr2L 10873037 intergenic not near genes chr2L 10873095 intergenic not near genes chr2L 10873153 intergenic not near genes chr2L_10_10870001 chr2L_10870001 RAL-235 242 chr2L 10873067 10873083 chr2L 10873127 10873176 6 80 5.0 3.5 4.2 1.2 109 chr2L 10873067 intergenic not near genes chr2L 10873122 intergenic not near genes chr2L 10873176 intergenic not near genes chr2L_6_10870001 chr2L_10870001 RAL-235 243 chr2L 10912983 10913002 chr2L 10913082 10913095 5 97 5.0 8.5 6.8 0.6 112 chr2L 10912983 intergenic not near genes chr2L 10913039 intergenic not near genes chr2L 10913095 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-235 244 chr2L 10946943 10946970 chr2L 10956168 10956204 roo 8 9226 2.0 6.5 4.2 1.5 9261 chr2L 10946943 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956204 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-235 245 chr2L 10986989 10987028 chr2L 10988300 10988309 4 1295 11.0 23.5 17.2 0.2 1320 chr2L 10986989 intron piwi - chr2L 10987649 intergenic CG12253 +,piwi - chr2L 10988309 exon CG12253 + chr2L_4_10985001 chr2L_10985001 RAL-235 246 chr2L 11055029 11055074 chr2L 11055134 11055179 6 105 6.5 1.0 3.8 1.2 150 chr2L 11055029 intron Samuel - chr2L 11055104 intron Samuel - chr2L 11055179 intron Samuel - chr2L_6_11055001 chr2L_11055001 RAL-235 247 chr2L 11224041 11224091 chr2L 11224172 11224222 22 130 6.0 1.0 3.5 4.9 181 chr2L 11224041 intron ab + chr2L 11224132 intron ab + chr2L 11224222 intron ab + chr2L_22_11220001 chr2L_11220001 RAL-235 248 chr2L 11292355 11292404 chr2L 11292457 11292501 19 96 3.0 5.0 4.0 3.8 146 chr2L 11292355 intergenic not near genes chr2L 11292428 intergenic not near genes chr2L 11292501 intergenic not near genes chr2L_19_11290001 chr2L_11290001 RAL-235 249 chr2L 11298802 11298851 chr2L 11298899 11298948 13 95 2.0 1.5 1.8 4.6 146 chr2L 11298802 intergenic not near genes chr2L 11298875 intergenic not near genes chr2L 11298948 intergenic not near genes chr2L_13_11295001 chr2L_11295001 RAL-235 250 chr2L 11312315 11312355 chr2L 11312418 11312456 7 97 9.0 2.5 5.8 1.0 141 chr2L 11312315 intergenic not near genes chr2L 11312386 intergenic not near genes chr2L 11312456 intergenic not near genes chr2L_7_11310001 chr2L_11310001 RAL-235 251 chr2L 11313093 11313136 chr2L 11313187 11313215 5 84 3.0 0.5 1.8 1.8 122 chr2L 11313093 intergenic not near genes chr2L 11313154 intergenic not near genes chr2L 11313215 intergenic not near genes chr2L_5_11310001 chr2L_11310001 RAL-235 252 chr2L 11357960 11358009 chr2L 11358058 11358107 16 97 4.5 4.5 4.5 2.9 147 chr2L 11357960 intergenic not near genes chr2L 11358034 intergenic not near genes chr2L 11358107 intergenic not near genes chr2L_16_11355001 chr2L_11355001 RAL-235 253 chr2L 11379930 11379981 chr2L 11380032 11380078 5 98 3.5 0.0 1.8 1.8 148 chr2L 11379930 intergenic not near genes chr2L 11380004 intergenic not near genes chr2L 11380078 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-235 254 chr2L 11380606 11380632 chr2L 11380686 11380694 5 87 1.0 2.0 1.5 2.0 88 chr2L 11380606 intergenic not near genes chr2L 11380650 intergenic not near genes chr2L 11380694 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-235 255 chr2L 11413288 11413321 chr2L 11413428 11413448 13 139 4.5 6.5 5.5 2.0 160 chr2L 11413288 intergenic not near genes chr2L 11413368 intergenic not near genes chr2L 11413448 intergenic not near genes chr2L_13_11410001 chr2L_11410001 RAL-235 256 chr2L 11418645 11418687 chr2L 11418734 11418770 12 90 1.5 3.0 2.2 3.8 125 chr2L 11418645 intergenic not near genes chr2L 11418708 intergenic not near genes chr2L 11418770 intergenic not near genes chr2L_12_11415001 chr2L_11415001 RAL-235 257 chr2L 11443178 11443197 chr2L 11443273 11443310 6 106 4.5 3.0 3.8 1.2 132 chr2L 11443178 intron salm - chr2L 11443244 intron salm - chr2L 11443310 intron salm - chr2L_6_11440001 chr2L_11440001 RAL-235 258 chr2L 11485662 11485710 chr2L 11485758 11485806 20 93 2.0 2.0 2.0 6.7 144 chr2L 11485662 exon,5` UTR CG43355 +,sala + chr2L 11485734 3` UTR,5` UTR CG43355 +,sala + chr2L 11485806 intron,intron CG43355 +,sala + chr2L_20_11485001 chr2L_11485001 RAL-235 259 chr2L 11496632 11496648 chr2L 11496714 11496746 9 93 4.5 2.5 3.5 2.0 114 chr2L 11496632 intergenic CG6488 - chr2L 11496689 intergenic CG6488 - chr2L 11496746 intergenic CG6488 - chr2L_9_11495001 chr2L_11495001 RAL-235 260 chr2L 11538823 11538855 chr2L 11538907 11538928 15 86 5.0 2.0 3.5 3.3 105 chr2L 11538823 intergenic not near genes chr2L 11538876 intergenic not near genes chr2L 11538928 intergenic not near genes chr2L_15_11535001 chr2L_11535001 RAL-235 261 chr2L 11540560 11540568 chr2L 11547985 11547985 Tabor 4 7423 12.5 9.5 11.0 0.3 7425 chr2L 11540560 intergenic not near genes chr2L 11544272 intergenic not near genes chr2L 11547985 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-235 262 chr2L 11540569 11540615 chr2L 11547983 11548027 Tabor 6 7418 8.0 9.0 8.5 0.6 7458 chr2L 11540569 intergenic not near genes chr2L 11544298 intergenic not near genes chr2L 11548027 intergenic not near genes chr2L_6_11540001 chr2L_11540001 RAL-235 263 chr2L 11563623 11563664 chr2L 11568847 11568888 copia 8 5222 3.0 4.5 3.8 1.7 5265 chr2L 11563623 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568888 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-235 264 chr2L 11609524 11609577 chr2L 11609620 11609673 16 93 2.5 6.0 4.2 3.1 149 chr2L 11609524 intron kek2 + chr2L 11609598 intron kek2 + chr2L 11609673 intron kek2 + chr2L_16_11605001 chr2L_11605001 RAL-235 265 chr2L 11612222 11612256 chr2L 11612317 11612362 9 99 6.5 4.0 5.2 1.5 140 chr2L 11612222 intron kek2 + chr2L 11612292 intron kek2 + chr2L 11612362 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-235 266 chr2L 11612645 11612671 chr2L 11612753 11612764 7 104 6.0 5.0 5.5 1.1 119 chr2L 11612645 intron kek2 + chr2L 11612704 intron kek2 + chr2L 11612764 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-235 267 chr2L 11612676 11612693 chr2L 11612750 11612790 11 91 4.5 4.5 4.5 2.0 114 chr2L 11612676 intron kek2 + chr2L 11612733 intron kek2 + chr2L 11612790 intron kek2 + chr2L_11_11610001 chr2L_11610001 RAL-235 268 chr2L 11672119 11672166 chr2L 11672246 11672257 7 121 4.0 3.5 3.8 1.5 138 chr2L 11672119 intergenic not near genes chr2L 11672188 intergenic not near genes chr2L 11672257 intergenic not near genes chr2L_7_11670001 chr2L_11670001 RAL-235 269 chr2L 11713497 11713531 chr2L 11720976 11721017 blood 5 7478 4.5 3.5 4.0 1.0 7520 chr2L 11713497 intergenic not near genes chr2L 11717257 intergenic not near genes chr2L 11721017 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-235 270 chr2L 11820427 11820459 chr2L 11820511 11820560 15 96 2.0 5.5 3.8 3.1 133 chr2L 11820427 intron Pde1c - chr2L 11820494 intron Pde1c - chr2L 11820560 intron Pde1c - chr2L_15_11820001 chr2L_11820001 RAL-235 271 chr2L 11825692 11825709 chr2L 11825785 11825797 4 94 5.0 0.0 2.5 1.1 105 chr2L 11825692 intron Pde1c - chr2L 11825744 intron Pde1c - chr2L 11825797 intron Pde1c - chr2L_4_11825001 chr2L_11825001 RAL-235 272 chr2L 11854663 11854705 chr2L 11854836 11854856 5 175 1.0 3.0 2.0 1.7 193 chr2L 11854663 intron Pde1c - chr2L 11854760 intron Pde1c - chr2L 11854856 intron Pde1c - chr2L_5_11850001 chr2L_11850001 RAL-235 273 chr2L 11862338 11862391 chr2L 11862451 11862504 11 110 2.5 5.0 3.8 2.3 166 chr2L 11862338 intron Pde1c - chr2L 11862421 intron Pde1c - chr2L 11862504 intron Pde1c - chr2L_11_11860001 chr2L_11860001 RAL-235 274 chr2L 11886434 11886449 chr2L 11886553 11886568 7 118 12.5 2.5 7.5 0.8 134 chr2L 11886434 intron Pde1c - chr2L 11886501 intron Pde1c - chr2L 11886568 intron Pde1c - chr2L_7_11885001 chr2L_11885001 RAL-235 275 chr2L 11889403 11889420 chr2L 11889766 11889783 6 363 10.0 2.0 6.0 0.9 380 chr2L 11889403 intron Pde1c - chr2L 11889593 intron Pde1c - chr2L 11889783 intron Pde1c - chr2L_6_11885001 chr2L_11885001 RAL-235 276 chr2L 11889423 11889450 chr2L 11889763 11889800 11 357 5.0 2.0 3.5 2.4 377 chr2L 11889423 intron Pde1c - chr2L 11889612 intron Pde1c - chr2L 11889800 intron Pde1c - chr2L_11_11885001 chr2L_11885001 RAL-235 277 chr2L 11892527 11892556 chr2L 11892636 11892665 10 106 4.0 4.0 4.0 2.0 138 chr2L 11892527 intron Pde1c - chr2L 11892596 intron Pde1c - chr2L 11892665 intron Pde1c - chr2L_10_11890001 chr2L_11890001 RAL-235 278 chr2L 11895250 11895287 chr2L 11895679 11895710 6 419 4.0 2.5 3.2 1.4 460 chr2L 11895250 intron Pde1c - chr2L 11895480 intron Pde1c - chr2L 11895710 intron Pde1c - chr2L_6_11895001 chr2L_11895001 RAL-235 279 chr2L 11957621 11957664 chr2L 11957729 11957732 5 90 1.5 2.5 2.0 1.7 111 chr2L 11957621 3` UTR CR43314 - chr2L 11957676 3` UTR CR43314 - chr2L 11957732 3` UTR CR43314 - chr2L_5_11955001 chr2L_11955001 RAL-235 280 chr2L 12067312 12067335 chr2L 12074384 12074407 297 7 7070 9.0 3.0 6.0 1.0 7095 chr2L 12067312 intergenic not near genes chr2L 12070860 intergenic not near genes chr2L 12074407 intergenic not near genes chr2L_7_12070001 chr2L_12070001 RAL-235 281 chr2L 12131448 12131496 chr2L 12131564 12131602 18 115 7.5 5.5 6.5 2.4 154 chr2L 12131448 intron rho-6 - chr2L 12131525 intron rho-6 - chr2L 12131602 intron rho-6 - chr2L_18_12130001 chr2L_12130001 RAL-235 282 chr2L 12132702 12132746 chr2L 12132808 12132852 17 104 0.0 5.5 2.8 4.5 150 chr2L 12132702 intron rho-6 - chr2L 12132777 intron rho-6 - chr2L 12132852 intron rho-6 - chr2L_17_12130001 chr2L_12130001 RAL-235 283 chr2L 12169544 12169576 chr2L 12169634 12169676 14 98 8.5 0.5 4.5 2.5 132 chr2L 12169544 3` UTR CG31760 + chr2L 12169610 3` UTR CG31760 + chr2L 12169676 3` UTR CG31760 + chr2L_14_12165001 chr2L_12165001 RAL-235 284 chr2L 12180865 12180874 chr2L 12180940 12180966 4 93 2.0 1.5 1.8 1.4 101 chr2L 12180865 intron aret + chr2L 12180916 intron aret + chr2L 12180966 intron aret + chr2L_4_12180001 chr2L_12180001 RAL-235 285 chr2L 12272178 12272195 chr2L 12272259 12272284 8 91 3.0 12.0 7.5 0.9 106 chr2L 12272178 intron aret + chr2L 12272231 intron aret + chr2L 12272284 intron aret + chr2L_8_12270001 chr2L_12270001 RAL-235 286 chr2L 12283563 12283591 chr2L 12283642 12283677 4 75 2.0 0.0 1.0 2.0 114 chr2L 12283563 intron aret + chr2L 12283620 intron aret + chr2L 12283677 intron aret + chr2L_4_12280001 chr2L_12280001 RAL-235 287 chr2L 12317623 12317664 chr2L 12317716 12317719 5 78 1.0 4.5 2.8 1.3 96 chr2L 12317623 intergenic CR45283 - chr2L 12317671 intergenic CR45283 - chr2L 12317719 intergenic CR45283 - chr2L_5_12315001 chr2L_12315001 RAL-235 288 chr2L 12366841 12366890 chr2L 12366947 12366996 12 104 7.5 3.5 5.5 1.8 155 chr2L 12366841 intron bru-2 + chr2L 12366918 intron bru-2 + chr2L 12366996 intron bru-2 + chr2L_12_12365001 chr2L_12365001 RAL-235 289 chr2L 12387275 12387306 chr2L 12387557 12387562 10 282 5.0 9.0 7.0 1.2 287 chr2L 12387275 intron bru-2 + chr2L 12387418 intron bru-2 + chr2L 12387562 intron bru-2 + chr2L_10_12385001 chr2L_12385001 RAL-235 290 chr2L 12468343 12468379 chr2L 12468439 12468477 12 95 3.5 8.5 6.0 1.7 134 chr2L 12468343 intron bun - chr2L 12468410 intron bun - chr2L 12468477 intron bun - chr2L_12_12465001 chr2L_12465001 RAL-235 291 chr2L 12487868 12487917 chr2L 12487969 12488011 16 93 5.0 4.5 4.8 2.8 143 chr2L 12487868 intron bun - chr2L 12487940 intron bun - chr2L 12488011 intron bun - chr2L_16_12485001 chr2L_12485001 RAL-235 292 chr2L 12529223 12529245 chr2L 12529394 12529416 12 169 9.5 6.5 8.0 1.3 193 chr2L 12529223 intron bun - chr2L 12529320 intron bun - chr2L 12529416 intron bun - chr2L_12_12525001 chr2L_12525001 RAL-235 293 chr2L 12529251 12529262 chr2L 12529391 12529420 5 163 6.0 6.0 6.0 0.7 169 chr2L 12529251 intron bun - chr2L 12529336 intron bun - chr2L 12529420 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-235 294 chr2L 12547486 12547490 chr2L 12547574 12547588 4 92 0.0 0.0 0.0 4.0 102 chr2L 12547486 intergenic not near genes chr2L 12547537 intergenic not near genes chr2L 12547588 intergenic not near genes chr2L_4_12545001 chr2L_12545001 RAL-235 295 chr2L 12558303 12558346 chr2L 12565452 12565495 HMS-Beagle 5 7147 4.0 2.5 3.2 1.2 7192 chr2L 12558303 intergenic not near genes chr2L 12561899 intergenic not near genes chr2L 12565495 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-235 296 chr2L 12638758 12638805 chr2L 12638880 12638928 18 122 6.0 3.0 4.5 3.3 170 chr2L 12638758 intron Ref2 - chr2L 12638843 intron Ref2 - chr2L 12638928 intron Ref2 - chr2L_18_12635001 chr2L_12635001 RAL-235 297 chr2L 12682865 12682883 chr2L 12682957 12682982 5 95 10.5 5.5 8.0 0.6 117 chr2L 12682865 intron pdm2 + chr2L 12682924 intron pdm2 + chr2L 12682982 intron pdm2 + chr2L_5_12680001 chr2L_12680001 RAL-235 298 chr2L 12682887 12682904 chr2L 12682955 12682992 9 85 6.5 5.5 6.0 1.3 105 chr2L 12682887 intron pdm2 + chr2L 12682940 intron pdm2 + chr2L 12682992 intron pdm2 + chr2L_9_12680001 chr2L_12680001 RAL-235 299 chr2L 12731038 12731087 chr2L 12735825 12735871 F-element 11 4785 4.5 3.0 3.8 2.3 4833 chr2L 12731038 intron MRP + chr2L 12733454 intron MRP + chr2L 12735871 intron MRP + chr2L_11_12730001 chr2L_12730001 RAL-235 300 chr2L 12739162 12739195 chr2L 12743963 12743980 Doc 4 4797 3.0 1.5 2.2 1.2 4818 chr2L 12739162 exon MRP + chr2L 12741571 intron MRP + chr2L 12743980 exon MRP + chr2L_4_12740001 chr2L_12740001 RAL-235 301 chr2L 12752598 12752623 chr2L 12752915 12752940 6 315 3.0 4.5 3.8 1.2 342 chr2L 12752598 intergenic not near genes chr2L 12752769 intergenic not near genes chr2L 12752940 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-235 302 chr2L 12752628 12752640 chr2L 12752909 12752940 5 306 2.5 3.5 3.0 1.2 312 chr2L 12752628 intergenic not near genes chr2L 12752784 intergenic not near genes chr2L 12752940 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-235 303 chr2L 12763812 12763871 chr2L 12764042 12764054 BS 8 214 0.0 0.0 0.0 8.0 242 chr2L 12763812 intergenic not near genes chr2L 12763933 intergenic not near genes chr2L 12764054 intergenic not near genes chr2L_8_12760001 chr2L_12760001 RAL-235 304 chr2L 12766740 12766778 chr2L 12766838 12766869 11 94 2.0 5.0 3.5 2.4 129 chr2L 12766740 intergenic not near genes chr2L 12766804 intergenic not near genes chr2L 12766869 intergenic not near genes chr2L_11_12765001 chr2L_12765001 RAL-235 305 chr2L 12781787 12781812 chr2L 12789250 12789270 Quasimodo 5 7462 5.0 7.5 6.2 0.7 7483 chr2L 12781787 intergenic not near genes chr2L 12785528 intergenic not near genes chr2L 12789270 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-235 306 chr2L 12791596 12791618 chr2L 12795280 12795313 F-element 4 3690 5.5 6.0 5.8 0.6 3717 chr2L 12791596 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795313 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-235 307 chr2L 12791619 12791632 chr2L 12795279 12795326 F-element 11 3675 3.5 5.5 4.5 2.0 3707 chr2L 12791619 intergenic not near genes chr2L 12793472 intergenic not near genes chr2L 12795326 intergenic not near genes chr2L_11_12790001 chr2L_12790001 RAL-235 308 chr2L 12861566 12861584 chr2L 12861655 12861688 7 100 4.5 4.0 4.2 1.3 122 chr2L 12861566 intergenic not near genes chr2L 12861627 intergenic not near genes chr2L 12861688 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-235 309 chr2L 12894018 12894051 chr2L 12895488 12895501 hobo 4 1460 4.5 6.0 5.2 0.6 1483 chr2L 12894018 intergenic not near genes chr2L 12894760 intergenic not near genes chr2L 12895501 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-235 310 chr2L 12905471 12905493 chr2L 12905575 12905597 7 103 6.0 5.0 5.5 1.1 126 chr2L 12905471 intergenic not near genes chr2L 12905534 intergenic not near genes chr2L 12905597 intergenic not near genes chr2L_7_12905001 chr2L_12905001 RAL-235 311 chr2L 12933830 12933868 chr2L 12941317 12941331 blood 13 7477 6.0 1.5 3.8 2.7 7501 chr2L 12933830 intergenic not near genes chr2L 12937580 intergenic not near genes chr2L 12941331 intergenic not near genes chr2L_13_12935001 chr2L_12935001 RAL-235 312 chr2L 12933871 12933874 chr2L 12941315 12941315 blood 4 7465 3.5 1.0 2.2 1.2 7444 chr2L 12933871 intergenic not near genes chr2L 12937593 intergenic not near genes chr2L 12941315 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-235 313 chr2L 12981270 12981319 chr2L 12981375 12981424 17 104 5.5 5.0 5.2 2.7 154 chr2L 12981270 3` UTR Vha68-3 + chr2L 12981347 intergenic Vha68-3 + chr2L 12981424 intergenic Vha68-3 + chr2L_17_12980001 chr2L_12980001 RAL-235 314 chr2L 12989052 12989077 chr2L 12989139 12989178 7 92 3.5 4.0 3.8 1.5 126 chr2L 12989052 intergenic not near genes chr2L 12989115 intergenic not near genes chr2L 12989178 intergenic not near genes chr2L_7_12985001 chr2L_12985001 RAL-235 315 chr2L 12990487 12990535 chr2L 12990588 12990637 11 97 1.5 5.5 3.5 2.4 150 chr2L 12990487 intergenic not near genes chr2L 12990562 intergenic not near genes chr2L 12990637 intergenic not near genes chr2L_11_12990001 chr2L_12990001 RAL-235 316 chr2L 13036224 13036271 chr2L 13036486 13036527 X-element 19 257 7.0 10.0 8.5 2.0 303 chr2L 13036224 intron CG9932 - chr2L 13036376 intron CG9932 - chr2L 13036527 intron CG9932 - chr2L_19_13035001 chr2L_13035001 RAL-235 317 chr2L 13093834 13093860 chr2L 13093932 13093937 5 91 3.5 4.5 4.0 1.0 103 chr2L 13093834 intergenic not near genes chr2L 13093886 intergenic not near genes chr2L 13093937 intergenic not near genes chr2L_5_13090001 chr2L_13090001 RAL-235 318 chr2L 13122383 13122410 chr2L 13122511 13122516 4 119 8.5 2.5 5.5 0.6 133 chr2L 13122383 intergenic not near genes chr2L 13122450 intergenic not near genes chr2L 13122516 intergenic not near genes chr2L_4_13120001 chr2L_13120001 RAL-235 319 chr2L 13152211 13152245 chr2L 13152309 13152343 10 96 6.0 1.0 3.5 2.2 132 chr2L 13152211 intergenic not near genes chr2L 13152277 intergenic not near genes chr2L 13152343 intergenic not near genes chr2L_10_13150001 chr2L_13150001 RAL-235 320 chr2L 13154095 13154109 chr2L 13154193 13154205 6 98 10.0 0.0 5.0 1.0 110 chr2L 13154095 intergenic not near genes chr2L 13154150 intergenic not near genes chr2L 13154205 intergenic not near genes chr2L_6_13150001 chr2L_13150001 RAL-235 321 chr2L 13231863 13231906 chr2L 13231994 13232037 10 129 7.0 5.0 6.0 1.4 174 chr2L 13231863 intergenic Prosalpha6T + chr2L 13231950 intergenic Prosalpha6T + chr2L 13232037 intergenic Prosalpha6T + chr2L_10_13230001 chr2L_13230001 RAL-235 322 chr2L 13405630 13405678 chr2L 13410447 13410495 Doc 12 4813 0.5 3.0 1.8 4.3 4865 chr2L 13405630 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-235 323 chr2L 13481449 13481472 chr2L 13482075 13482080 jockey 4 621 6.5 3.5 5.0 0.7 631 chr2L 13481449 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482080 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-235 324 chr2L 13496685 13496732 chr2L 13496798 13496809 4 101 2.5 2.0 2.2 1.2 124 chr2L 13496685 exon CG42784 + chr2L 13496747 intron CG42784 + chr2L 13496809 intron CG42784 + chr2L_4_13495001 chr2L_13495001 RAL-235 325 chr2L 13540480 13540517 chr2L 13540594 13540615 7 108 5.5 4.0 4.8 1.2 135 chr2L 13540480 intron B4 - chr2L 13540548 intron B4 - chr2L 13540615 intron B4 - chr2L_7_13540001 chr2L_13540001 RAL-235 326 chr2L 13560383 13560421 chr2L 13565224 13565262 F-element 14 4840 12.0 2.5 7.2 1.7 4879 chr2L 13560383 intron kuz + chr2L 13562822 intron kuz + chr2L 13565262 intron kuz + chr2L_14_13560001 chr2L_13560001 RAL-235 327 chr2L 13598995 13599019 chr2L 13599118 13599134 6 122 6.5 6.5 6.5 0.8 139 chr2L 13598995 intron kuz + chr2L 13599064 intron kuz + chr2L 13599134 intron kuz + chr2L_6_13595001 chr2L_13595001 RAL-235 328 chr2L 13604091 13604103 chr2L 13604251 13604268 7 167 14.0 2.0 8.0 0.8 177 chr2L 13604091 intron kuz + chr2L 13604180 intron kuz + chr2L 13604268 intron kuz + chr2L_7_13600001 chr2L_13600001 RAL-235 329 chr2L 13616474 13616499 chr2L 13616885 13616910 8 417 2.5 4.0 3.2 1.9 436 chr2L 13616474 intron kuz + chr2L 13616692 intron kuz + chr2L 13616910 intron kuz + chr2L_8_13615001 chr2L_13615001 RAL-235 330 chr2L 13616500 13616503 chr2L 13616879 13616924 4 408 1.5 4.0 2.8 1.1 424 chr2L 13616500 intron kuz + chr2L 13616712 intron kuz + chr2L 13616924 intron kuz + chr2L_4_13615001 chr2L_13615001 RAL-235 331 chr2L 13622115 13622131 chr2L 13622234 13622248 5 117 9.0 0.5 4.8 0.9 133 chr2L 13622115 intron kuz + chr2L 13622182 intron kuz + chr2L 13622248 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-235 332 chr2L 13622135 13622164 chr2L 13622233 13622248 10 102 2.5 0.5 1.5 4.0 113 chr2L 13622135 intron kuz + chr2L 13622192 intron kuz + chr2L 13622248 intron kuz + chr2L_10_13620001 chr2L_13620001 RAL-235 333 chr2L 13665097 13665100 chr2L 13665208 13665216 4 113 0.0 0.0 0.0 4.0 119 chr2L 13665097 intergenic CG18507 + chr2L 13665156 intergenic CG18507 + chr2L 13665216 intergenic CG18507 + chr2L_4_13665001 chr2L_13665001 RAL-235 334 chr2L 13692146 13692182 chr2L 13692242 13692277 11 94 3.5 6.5 5.0 1.8 131 chr2L 13692146 intron CG31814 - chr2L 13692212 intron CG31814 - chr2L 13692277 intron CG31814 - chr2L_11_13690001 chr2L_13690001 RAL-235 335 chr2L 13749198 13749209 chr2L 13749296 13749311 9 102 0.5 0.0 0.2 7.5 113 chr2L 13749198 intron,intron CR44846 +,TM9SF4 + chr2L 13749254 intron,intron CR44846 +,TM9SF4 + chr2L 13749311 intron,intron CR44846 +,TM9SF4 + chr2L_9_13745001 chr2L_13745001 RAL-235 336 chr2L 13761814 13761833 chr2L 13762911 13762916 Doc 6 1105 4.0 3.0 3.5 1.3 1102 chr2L 13761814 intron TM9SF4 + chr2L 13762365 intron TM9SF4 + chr2L 13762916 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-235 337 chr2L 13800157 13800207 chr2L 13800281 13800331 14 123 3.0 5.0 4.0 2.8 174 chr2L 13800157 intergenic Sec71 + chr2L 13800244 intergenic not near genes chr2L 13800331 intergenic not near genes chr2L_14_13800001 chr2L_13800001 RAL-235 338 chr2L 13841829 13841871 chr2L 13841956 13841997 14 124 4.0 0.5 2.2 4.4 168 chr2L 13841829 intron CenG1A + chr2L 13841913 intron CenG1A + chr2L 13841997 intron CenG1A + chr2L_14_13840001 chr2L_13840001 RAL-235 339 chr2L 13851661 13851708 chr2L 13851787 13851813 16 124 3.0 3.5 3.2 3.8 152 chr2L 13851661 intron CenG1A + chr2L 13851737 intron CenG1A + chr2L 13851813 intron CenG1A + chr2L_16_13850001 chr2L_13850001 RAL-235 340 chr2L 13853085 13853089 chr2L 13862254 13862259 roo 4 9170 7.0 0.5 3.8 0.8 9174 chr2L 13853085 intron CenG1A + chr2L 13857672 intron CenG1A + chr2L 13862259 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-235 341 chr2L 13853092 13853116 chr2L 13862251 13862278 roo 7 9164 5.0 0.5 2.8 1.8 9186 chr2L 13853092 intron CenG1A + chr2L 13857685 intron CenG1A + chr2L 13862278 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-235 342 chr2L 14102839 14102855 chr2L 14102929 14102956 6 99 0.0 0.0 0.0 6.0 117 chr2L 14102839 intergenic not near genes chr2L 14102898 intergenic not near genes chr2L 14102956 intergenic not near genes chr2L_6_14100001 chr2L_14100001 RAL-235 343 chr2L 14180042 14180091 chr2L 14180138 14180184 20 94 4.0 4.0 4.0 4.0 142 chr2L 14180042 intron CG43333 - chr2L 14180113 intron CG43333 - chr2L 14180184 intron CG43333 - chr2L_20_14180001 chr2L_14180001 RAL-235 344 chr2L 14253903 14253948 chr2L 14254006 14254021 13 94 2.0 2.0 2.0 4.3 118 chr2L 14253903 intergenic not near genes chr2L 14253962 intergenic not near genes chr2L 14254021 intergenic not near genes chr2L_13_14250001 chr2L_14250001 RAL-235 345 chr2L 14333907 14333929 chr2L 14334008 14334049 7 116 4.5 3.0 3.8 1.5 142 chr2L 14333907 intergenic ms(2)34Fe +,CG33090 + chr2L 14333978 intergenic ms(2)34Fe +,CG33090 + chr2L 14334049 intergenic CG33090 +,ms(2)34Fe + chr2L_7_14330001 chr2L_14330001 RAL-235 346 chr2L 14378637 14378673 chr2L 14378730 14378766 15 95 6.0 0.0 3.0 3.8 129 chr2L 14378637 3` UTR ppk - chr2L 14378702 3` UTR ppk - chr2L 14378766 3` UTR ppk - chr2L_15_14375001 chr2L_14375001 RAL-235 347 chr2L 14441538 14441557 chr2L 14441647 14441660 6 100 5.5 9.5 7.5 0.7 122 chr2L 14441538 intergenic not near genes chr2L 14441599 intergenic not near genes chr2L 14441660 intergenic not near genes chr2L_6_14440001 chr2L_14440001 RAL-235 348 chr2L 14441563 14441578 chr2L 14441638 14441680 6 91 2.5 6.5 4.5 1.1 117 chr2L 14441563 intergenic not near genes chr2L 14441622 intergenic not near genes chr2L 14441680 intergenic not near genes chr2L_6_14440001 chr2L_14440001 RAL-235 349 chr2L 14588368 14588417 chr2L 14588542 14588591 14 168 7.0 2.5 4.8 2.4 223 chr2L 14588368 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588591 intergenic CG42680 - chr2L_14_14585001 chr2L_14585001 RAL-235 350 chr2L 14601966 14601973 chr2L 14602064 14602077 7 101 10.5 6.5 8.5 0.7 111 chr2L 14601966 exon osp - chr2L 14602022 intron osp - chr2L 14602077 intron osp - chr2L_7_14600001 chr2L_14600001 RAL-235 351 chr2L 14601976 14602001 chr2L 14602063 14602105 9 99 3.5 6.0 4.8 1.6 129 chr2L 14601976 exon osp - chr2L 14602040 intron osp - chr2L 14602105 intron osp - chr2L_9_14600001 chr2L_14600001 RAL-235 352 chr2L 14642558 14642593 chr2L 14651740 14651776 roo 8 9183 4.5 4.5 4.5 1.5 9218 chr2L 14642558 intron osp - chr2L 14647167 intron osp - chr2L 14651776 intron osp - chr2L_8_14645001 chr2L_14645001 RAL-235 353 chr2L 14765232 14765242 chr2L 14765331 14765343 4 98 9.5 2.5 6.0 0.6 111 chr2L 14765232 intergenic not near genes chr2L 14765288 intergenic not near genes chr2L 14765343 intergenic not near genes chr2L_4_14765001 chr2L_14765001 RAL-235 354 chr2L 14765248 14765271 chr2L 14765323 14765362 5 84 2.0 2.5 2.2 1.6 114 chr2L 14765248 intergenic not near genes chr2L 14765305 intergenic not near genes chr2L 14765362 intergenic not near genes chr2L_5_14765001 chr2L_14765001 RAL-235 355 chr2L 14778819 14778840 chr2L 14779095 14779128 4 288 5.0 2.5 3.8 0.8 309 chr2L 14778819 intergenic not near genes chr2L 14778974 intergenic not near genes chr2L 14779128 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-235 356 chr2L 14803860 14803909 chr2L 14809083 14809122 copia 14 5216 8.0 4.0 6.0 2.0 5262 chr2L 14803860 intergenic not near genes chr2L 14806491 intergenic not near genes chr2L 14809122 intergenic not near genes chr2L_14_14805001 chr2L_14805001 RAL-235 357 chr2L 14840983 14841005 chr2L 14841068 14841087 5 97 3.5 3.5 3.5 1.1 104 chr2L 14840983 3` UTR CR43805 - chr2L 14841035 3` UTR CR43805 - chr2L 14841087 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-235 358 chr2L 14887680 14887703 chr2L 14887778 14887796 6 97 5.5 5.0 5.2 1.0 116 chr2L 14887680 intergenic not near genes chr2L 14887738 intergenic not near genes chr2L 14887796 intergenic not near genes chr2L_6_14885001 chr2L_14885001 RAL-235 359 chr2L 14889949 14889977 chr2L 14890394 14890422 jockey 8 444 4.0 6.0 5.0 1.3 473 chr2L 14889949 intergenic not near genes chr2L 14890186 intergenic not near genes chr2L 14890422 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-235 360 chr2L 14933372 14933399 chr2L 14933468 14933497 7 95 1.0 4.5 2.8 1.8 125 chr2L 14933372 intron CG42313 - chr2L 14933434 intron CG42313 - chr2L 14933497 intron CG42313 - chr2L_7_14930001 chr2L_14930001 RAL-235 361 chr2L 14979498 14979541 chr2L 14979598 14979645 8 102 2.0 1.5 1.8 2.9 147 chr2L 14979498 intron mol - chr2L 14979572 intron mol - chr2L 14979645 intron mol - chr2L_8_14975001 chr2L_14975001 RAL-235 362 chr2L 14982120 14982286 chr2L 14982246 14982392 25 108 0.0 0.0 0.0 25.0 272 chr2L 14982120 intron mol - chr2L 14982256 intron mol - chr2L 14982392 intron mol - chr2L_25_14980001 chr2L_14980001 RAL-235 363 chr2L 14984379 14984396 chr2L 14991991 14992015 opus 5 7616 2.0 4.0 3.0 1.2 7636 chr2L 14984379 intron mol - chr2L 14988197 intron mol - chr2L 14992015 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-235 364 chr2L 14992040 14992088 chr2L 14992149 14992199 11 108 3.0 3.0 3.0 2.8 159 chr2L 14992040 intron mol - chr2L 14992120 intron mol - chr2L 14992199 intron mol - chr2L_11_14990001 chr2L_14990001 RAL-235 365 chr2L 15014606 15014621 chr2L 15014703 15014710 6 95 1.0 7.5 4.2 1.2 104 chr2L 15014606 intergenic not near genes chr2L 15014658 intergenic not near genes chr2L 15014710 intergenic not near genes chr2L_6_15010001 chr2L_15010001 RAL-235 366 chr2L 15044700 15044740 chr2L 15044790 15044825 12 90 5.0 0.0 2.5 3.4 125 chr2L 15044700 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044825 intergenic ck - chr2L_12_15040001 chr2L_15040001 RAL-235 367 chr2L 15078049 15078094 chr2L 15078157 15078172 11 103 5.0 8.0 6.5 1.5 123 chr2L 15078049 intron CG15270 + chr2L 15078110 intron CG15270 + chr2L 15078172 intron CG15270 + chr2L_11_15075001 chr2L_15075001 RAL-235 368 chr2L 15122759 15122806 chr2L 15122859 15122906 10 96 3.5 5.0 4.2 1.9 147 chr2L 15122759 intergenic not near genes chr2L 15122832 intergenic not near genes chr2L 15122906 intergenic not near genes chr2L_10_15120001 chr2L_15120001 RAL-235 369 chr2L 15138967 15139004 chr2L 15139075 15139112 4 108 1.5 0.0 0.8 2.2 145 chr2L 15138967 intergenic not near genes chr2L 15139040 intergenic not near genes chr2L 15139112 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-235 370 chr2L 15163922 15163931 chr2L 15164019 15164028 4 96 3.0 6.0 4.5 0.7 106 chr2L 15163922 intron CG4168 - chr2L 15163975 intron CG4168 - chr2L 15164028 intron CG4168 - chr2L_4_15160001 chr2L_15160001 RAL-235 371 chr2L 15240203 15240247 chr2L 15240334 15240378 9 130 6.0 4.5 5.2 1.5 175 chr2L 15240203 intron ZnT35C - chr2L 15240290 intron ZnT35C - chr2L 15240378 intron ZnT35C - chr2L_9_15240001 chr2L_15240001 RAL-235 372 chr2L 15309435 15309480 chr2L 15309622 15309662 19 184 4.0 1.5 2.8 5.0 227 chr2L 15309435 intergenic not near genes chr2L 15309548 intergenic not near genes chr2L 15309662 intergenic not near genes chr2L_19_15305001 chr2L_15305001 RAL-235 373 chr2L 15343519 15343541 chr2L 15343624 15343646 11 104 3.5 0.5 2.0 3.7 127 chr2L 15343519 intergenic not near genes chr2L 15343582 intergenic not near genes chr2L 15343646 intergenic not near genes chr2L_11_15340001 chr2L_15340001 RAL-235 374 chr2L 15352952 15353000 chr2L 15353048 15353093 15 93 4.5 4.0 4.2 2.9 141 chr2L 15352952 intergenic not near genes chr2L 15353022 intergenic not near genes chr2L 15353093 intergenic not near genes chr2L_15_15350001 chr2L_15350001 RAL-235 375 chr2L 15375796 15375843 chr2L 15375928 15375975 11 130 2.5 4.0 3.2 2.6 179 chr2L 15375796 intergenic not near genes chr2L 15375886 intergenic not near genes chr2L 15375975 intergenic not near genes chr2L_11_15375001 chr2L_15375001 RAL-235 376 chr2L 15446043 15446077 chr2L 15453519 15453566 blood 11 7478 4.5 2.5 3.5 2.4 7523 chr2L 15446043 intergenic not near genes chr2L 15449804 intergenic not near genes chr2L 15453566 intergenic not near genes chr2L_11_15445001 chr2L_15445001 RAL-235 377 chr2L 15510917 15510966 chr2L 15511029 15511080 12 112 4.0 7.5 5.8 1.8 163 chr2L 15510917 intergenic not near genes chr2L 15510998 intergenic not near genes chr2L 15511080 intergenic not near genes chr2L_12_15510001 chr2L_15510001 RAL-235 378 chr2L 15514309 15514332 chr2L 15514413 15514436 4 102 7.5 8.0 7.8 0.5 127 chr2L 15514309 intergenic not near genes chr2L 15514372 intergenic not near genes chr2L 15514436 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-235 379 chr2L 15535872 15535918 chr2L 15535974 15536025 16 101 1.5 4.5 3.0 4.0 153 chr2L 15535872 intergenic not near genes chr2L 15535948 intergenic not near genes chr2L 15536025 intergenic not near genes chr2L_16_15535001 chr2L_15535001 RAL-235 380 chr2L 15586389 15586429 chr2L 15593461 15593499 297 8 7069 8.5 0.0 4.2 1.5 7110 chr2L 15586389 intergenic not near genes chr2L 15589944 intergenic not near genes chr2L 15593499 intergenic not near genes chr2L_8_15585001 chr2L_15585001 RAL-235 381 chr2L 15598773 15598795 chr2L 15598872 15598894 4 99 3.5 0.5 2.0 1.3 121 chr2L 15598773 intergenic not near genes chr2L 15598834 intergenic not near genes chr2L 15598894 intergenic not near genes chr2L_4_15595001 chr2L_15595001 RAL-235 382 chr2L 15751446 15751474 chr2L 15751543 15751567 7 96 0.5 2.5 1.5 2.8 121 chr2L 15751446 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751506 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751567 3` UTR snRNA:U5:35D - chr2L_7_15750001 chr2L_15750001 RAL-235 383 chr2L 15755714 15755741 chr2L 15755805 15755837 13 93 6.0 3.0 4.5 2.4 123 chr2L 15755714 3` UTR l(2)35Df + chr2L 15755776 3` UTR l(2)35Df + chr2L 15755837 3` UTR l(2)35Df + chr2L_13_15755001 chr2L_15755001 RAL-235 384 chr2L 15790174 15790218 chr2L 15790263 15790308 11 94 8.5 5.0 6.8 1.4 134 chr2L 15790174 intergenic CG18109 + chr2L 15790241 intergenic CG18109 + chr2L 15790308 intergenic CG18109 + chr2L_11_15790001 chr2L_15790001 RAL-235 385 chr2L 15810344 15810391 chr2L 15810513 15810560 14 164 3.5 3.0 3.2 3.3 216 chr2L 15810344 intergenic CR44602 -,CG42876 - chr2L 15810452 intergenic CG42876 -,CR44602 - chr2L 15810560 intergenic CG42876 -,CR44602 - chr2L_14_15810001 chr2L_15810001 RAL-235 386 chr2L 15819315 15819340 chr2L 15819390 15819436 4 88 3.0 0.5 1.8 1.4 121 chr2L 15819315 intergenic not near genes chr2L 15819376 intergenic not near genes chr2L 15819436 intergenic not near genes chr2L_4_15815001 chr2L_15815001 RAL-235 387 chr2L 15821058 15821081 chr2L 15821155 15821201 12 116 0.0 3.0 1.5 4.8 143 chr2L 15821058 intergenic not near genes chr2L 15821130 intergenic not near genes chr2L 15821201 intergenic not near genes chr2L_12_15820001 chr2L_15820001 RAL-235 388 chr2L 15826879 15826885 chr2L 15829292 15829299 Tabor 4 2414 6.5 9.5 8.0 0.4 2420 chr2L 15826879 intergenic not near genes chr2L 15828089 intergenic not near genes chr2L 15829299 intergenic not near genes chr2L_4_15825001 chr2L_15825001 RAL-235 389 chr2L 15887700 15887744 chr2L 15887851 15887897 15 148 3.0 3.5 3.2 3.6 197 chr2L 15887700 intergenic not near genes chr2L 15887798 intergenic not near genes chr2L 15887897 intergenic not near genes chr2L_15_15885001 chr2L_15885001 RAL-235 390 chr2L 15906190 15906214 chr2L 15906270 15906314 11 102 2.5 4.0 3.2 2.6 124 chr2L 15906190 intron beat-Ib - chr2L 15906252 intron beat-Ib - chr2L 15906314 intron beat-Ib - chr2L_11_15905001 chr2L_15905001 RAL-235 391 chr2L 15935170 15935215 chr2L 15935278 15935325 9 108 3.5 3.5 3.5 2.0 155 chr2L 15935170 intron beat-Ib - chr2L 15935248 intron beat-Ib - chr2L 15935325 intron beat-Ib - chr2L_9_15935001 chr2L_15935001 RAL-235 392 chr2L 15950364 15950411 chr2L 15950462 15950509 12 94 4.0 0.5 2.2 3.8 145 chr2L 15950364 intron beat-Ib - chr2L 15950436 intron beat-Ib - chr2L 15950509 intron beat-Ib - chr2L_12_15950001 chr2L_15950001 RAL-235 393 chr2L 15956021 15956052 chr2L 15957488 15957538 hobo 10 1483 4.5 4.0 4.2 1.9 1517 chr2L 15956021 intron beat-Ib - chr2L 15956780 intron beat-Ib - chr2L 15957538 intron beat-Ib - chr2L_10_15955001 chr2L_15955001 RAL-235 394 chr2L 15991064 15991100 chr2L 15991166 15991179 12 103 4.0 8.5 6.2 1.7 115 chr2L 15991064 intergenic not near genes chr2L 15991122 intergenic not near genes chr2L 15991179 intergenic not near genes chr2L_12_15990001 chr2L_15990001 RAL-235 395 chr2L 16045427 16045468 chr2L 16045597 16045621 12 166 5.5 0.0 2.8 3.2 194 chr2L 16045427 intron,intron BicC +,CG45084 + chr2L 16045524 intron,intron BicC +,CG45084 + chr2L 16045621 intron,intron BicC +,CG45084 + chr2L_12_16045001 chr2L_16045001 RAL-235 396 chr2L 16056146 16056155 chr2L 16056234 16056251 4 89 3.5 2.0 2.8 1.1 105 chr2L 16056146 intron beat-Ia + chr2L 16056198 intron beat-Ia + chr2L 16056251 5` UTR beat-Ia + chr2L_4_16055001 chr2L_16055001 RAL-235 397 chr2L 16098900 16098941 chr2L 16099008 16099044 10 105 3.5 6.0 4.8 1.7 144 chr2L 16098900 intergenic not near genes chr2L 16098972 intergenic not near genes chr2L 16099044 intergenic not near genes chr2L_10_16095001 chr2L_16095001 RAL-235 398 chr2L 16141155 16141193 chr2L 16146370 16146420 copia 13 5223 2.5 1.0 1.8 4.6 5265 chr2L 16141155 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146420 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-235 399 chr2L 16153723 16153748 chr2L 16160811 16160836 297 9 7086 5.0 4.0 4.5 1.6 7113 chr2L 16153723 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160836 intergenic not near genes chr2L_9_16155001 chr2L_16155001 RAL-235 400 chr2L 16161577 16161610 chr2L 16161741 16161756 8 165 2.5 1.0 1.8 2.9 179 chr2L 16161577 intergenic not near genes chr2L 16161666 intergenic not near genes chr2L 16161756 intergenic not near genes chr2L_8_16160001 chr2L_16160001 RAL-235 401 chr2L 16226169 16226213 chr2L 16226276 16226320 15 103 5.5 6.0 5.8 2.2 151 chr2L 16226169 intergenic not near genes chr2L 16226244 intergenic not near genes chr2L 16226320 intergenic not near genes chr2L_15_16225001 chr2L_16225001 RAL-235 402 chr2L 16254872 16254912 chr2L 16255151 16255181 7 278 5.0 10.0 7.5 0.8 309 chr2L 16254872 intron PRL-1 - chr2L 16255026 intron PRL-1 - chr2L 16255181 intron PRL-1 - chr2L_7_16255001 chr2L_16255001 RAL-235 403 chr2L 16354760 16354781 chr2L 16354867 16354872 8 105 6.5 3.0 4.8 1.4 112 chr2L 16354760 intergenic CaBP1 -,CG4455 + chr2L 16354816 intergenic CaBP1 -,CG4455 + chr2L 16354872 intergenic CaBP1 -,CG4455 + chr2L_8_16350001 chr2L_16350001 RAL-235 404 chr2L 16358594 16358632 chr2L 16358693 16358732 4 100 0.0 4.0 2.0 1.3 138 chr2L 16358594 intergenic not near genes chr2L 16358663 intergenic not near genes chr2L 16358732 intergenic not near genes chr2L_4_16355001 chr2L_16355001 RAL-235 405 chr2L 16363923 16363973 chr2L 16364189 16364223 18 263 1.5 4.0 2.8 4.7 300 chr2L 16363923 intergenic not near genes chr2L 16364073 intergenic not near genes chr2L 16364223 intergenic not near genes chr2L_18_16360001 chr2L_16360001 RAL-235 406 chr2L 16507952 16507967 chr2L 16508060 16508073 4 108 0.0 9.0 4.5 0.7 121 chr2L 16507952 intergenic CG5953 -,Tpr2 + chr2L 16508012 intergenic CG5953 -,Tpr2 + chr2L 16508073 intergenic CG5953 -,Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-235 407 chr2L 16511968 16511993 chr2L 16519115 16519140 HMS-Beagle 4 7147 8.5 7.5 8.0 0.4 7172 chr2L 16511968 intron CG5953 - chr2L 16515554 intron CG5953 - chr2L 16519140 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-235 408 chr2L 16544117 16544136 chr2L 16544210 16544230 5 92 3.0 9.5 6.2 0.7 113 chr2L 16544117 intergenic not near genes chr2L 16544174 intergenic not near genes chr2L 16544230 intergenic not near genes chr2L_5_16540001 chr2L_16540001 RAL-235 409 chr2L 16544140 16544153 chr2L 16544206 16544252 7 90 3.5 9.0 6.2 1.0 112 chr2L 16544140 intergenic not near genes chr2L 16544196 intergenic not near genes chr2L 16544252 intergenic not near genes chr2L_7_16540001 chr2L_16540001 RAL-235 410 chr2L 16619942 16619995 chr2L 16620041 16620069 24 96 7.0 8.5 7.8 2.7 127 chr2L 16619942 intron CG42389 + chr2L 16620006 intron CG42389 + chr2L 16620069 intron CG42389 + chr2L_24_16620001 chr2L_16620001 RAL-235 411 chr2L 16654681 16654733 chr2L 16654794 16654834 18 106 2.5 2.0 2.2 5.6 153 chr2L 16654681 intron CG42389 + chr2L 16654758 intron CG42389 + chr2L 16654834 intron CG42389 + chr2L_18_16650001 chr2L_16650001 RAL-235 412 chr2L 16670412 16670448 chr2L 16670498 16670542 15 92 4.0 7.0 5.5 2.3 130 chr2L 16670412 intron Trpgamma - chr2L 16670477 intron Trpgamma - chr2L 16670542 intron Trpgamma - chr2L_15_16670001 chr2L_16670001 RAL-235 413 chr2L 16799475 16799502 chr2L 16799637 16799664 11 159 0.0 2.0 1.0 5.5 189 chr2L 16799475 intron Ugt36Bc + chr2L 16799570 intron Ugt36Bc + chr2L 16799664 intron Ugt36Bc + chr2L_11_16795001 chr2L_16795001 RAL-235 414 chr2L 16861075 16861095 chr2L 16861260 16861269 9 184 9.0 3.5 6.2 1.2 194 chr2L 16861075 intron CG6012 - chr2L 16861172 exon CG6012 - chr2L 16861269 exon CG6012 - chr2L_9_16860001 chr2L_16860001 RAL-235 415 chr2L 16861102 16861116 chr2L 16861255 16861272 4 161 6.5 2.5 4.5 0.7 170 chr2L 16861102 intron CG6012 - chr2L 16861187 exon CG6012 - chr2L 16861272 exon CG6012 - chr2L_4_16860001 chr2L_16860001 RAL-235 416 chr2L 16958088 16958117 chr2L 16962896 16962925 Doc 13 4807 8.5 6.0 7.2 1.6 4837 chr2L 16958088 intergenic not near genes chr2L 16960506 intergenic not near genes chr2L 16962925 intergenic not near genes chr2L_13_16960001 chr2L_16960001 RAL-235 417 chr2L 16958119 16958136 chr2L 16962889 16962929 Doc 5 4797 5.0 5.0 5.0 0.8 4810 chr2L 16958119 intergenic not near genes chr2L 16960524 intergenic not near genes chr2L 16962929 intergenic not near genes chr2L_5_16960001 chr2L_16960001 RAL-235 418 chr2L 17000106 17000151 chr2L 17000242 17000292 11 138 2.0 2.5 2.2 3.4 186 chr2L 17000106 intergenic not near genes chr2L 17000199 intergenic not near genes chr2L 17000292 intergenic not near genes chr2L_11_17000001 chr2L_17000001 RAL-235 419 chr2L 17158719 17158758 chr2L 17158841 17158880 12 119 0.5 4.5 2.5 3.4 161 chr2L 17158719 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158800 intron,intron CG34106 +,beat-IIIa + chr2L 17158880 intron,intron CG34106 +,beat-IIIa + chr2L_12_17155001 chr2L_17155001 RAL-235 420 chr2L 17167555 17167591 chr2L 17167806 17167852 pogo 6 248 3.5 3.0 3.2 1.4 297 chr2L 17167555 intron,intron CG34106 +,beat-IIIa + chr2L 17167704 intron,intron CG34106 +,beat-IIIa + chr2L 17167852 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-235 421 chr2L 17168173 17168225 chr2L 17168971 17169022 17 794 2.5 2.0 2.2 5.3 849 chr2L 17168173 intron,intron CG34106 +,beat-IIIa + chr2L 17168598 intron,intron CG34106 +,beat-IIIa + chr2L 17169022 intron,intron CG34106 +,beat-IIIa + chr2L_17_17165001 chr2L_17165001 RAL-235 422 chr2L 17199155 17199191 chr2L 17200630 17200652 hobo 10 1478 4.5 3.5 4.0 2.0 1497 chr2L 17199155 intron beat-IIIc - chr2L 17199904 intron beat-IIIc - chr2L 17200652 intron beat-IIIc - chr2L_10_17195001 chr2L_17195001 RAL-235 423 chr2L 17216675 17216722 chr2L 17216901 17216919 4 217 1.5 2.0 1.8 1.4 244 chr2L 17216675 intron beat-IIIc - chr2L 17216797 intron beat-IIIc - chr2L 17216919 intron beat-IIIc - chr2L_4_17215001 chr2L_17215001 RAL-235 424 chr2L 17261185 17261242 chr2L 17261296 17261347 4 102 0.0 4.5 2.2 1.2 162 chr2L 17261185 intergenic beat-IIIc - chr2L 17261266 intergenic not near genes chr2L 17261347 intergenic not near genes chr2L_4_17260001 chr2L_17260001 RAL-235 425 chr2L 17264727 17264772 chr2L 17264825 17264863 16 98 4.5 9.0 6.8 2.1 136 chr2L 17264727 intergenic not near genes chr2L 17264795 intergenic not near genes chr2L 17264863 intergenic not near genes chr2L_16_17260001 chr2L_17260001 RAL-235 426 chr2L 17273177 17273212 chr2L 17277976 17278015 F-element 6 4796 2.5 4.5 3.5 1.3 4838 chr2L 17273177 intergenic not near genes chr2L 17275596 intergenic not near genes chr2L 17278015 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-235 427 chr2L 17335499 17335524 chr2L 17336714 17336739 1360 14 1214 2.0 2.5 2.2 4.4 1240 chr2L 17335499 intergenic not near genes chr2L 17336119 intergenic not near genes chr2L 17336739 intergenic not near genes chr2L_14_17335001 chr2L_17335001 RAL-235 428 chr2L 17420892 17420904 chr2L 17420984 17421004 5 98 0.0 5.5 2.8 1.3 112 chr2L 17420892 intron Dif - chr2L 17420948 intron Dif - chr2L 17421004 intron Dif - chr2L_5_17420001 chr2L_17420001 RAL-235 429 chr2L 17424686 17424739 chr2L 17424818 17424860 15 126 4.0 1.0 2.5 4.3 174 chr2L 17424686 intron Dif - chr2L 17424773 intron Dif - chr2L 17424860 intron Dif - chr2L_15_17420001 chr2L_17420001 RAL-235 430 chr2L 17432622 17432667 chr2L 17432709 17432764 15 88 3.5 6.0 4.8 2.6 142 chr2L 17432622 intron Dif - chr2L 17432693 intron Dif - chr2L 17432764 intron Dif - chr2L_15_17430001 chr2L_17430001 RAL-235 431 chr2L 17577720 17577737 chr2L 17577809 17577822 5 90 10.0 7.0 8.5 0.5 102 chr2L 17577720 intergenic not near genes chr2L 17577771 intergenic not near genes chr2L 17577822 intergenic not near genes chr2L_5_17575001 chr2L_17575001 RAL-235 432 chr2L 17623354 17623368 chr2L 17623455 17623469 7 100 8.0 6.0 7.0 0.9 115 chr2L 17623354 intergenic not near genes chr2L 17623412 intergenic not near genes chr2L 17623469 intergenic not near genes chr2L_7_17620001 chr2L_17620001 RAL-235 433 chr2L 17623369 17623397 chr2L 17623454 17623498 13 98 5.0 5.5 5.2 2.1 129 chr2L 17623369 intergenic not near genes chr2L 17623434 intergenic not near genes chr2L 17623498 intergenic not near genes chr2L_13_17620001 chr2L_17620001 RAL-235 434 chr2L 17637157 17637196 chr2L 17637262 17637301 7 103 3.0 6.0 4.5 1.3 144 chr2L 17637157 intergenic not near genes chr2L 17637229 intergenic not near genes chr2L 17637301 intergenic not near genes chr2L_7_17635001 chr2L_17635001 RAL-235 435 chr2L 17687502 17687522 chr2L 17692267 17692277 F-element 5 4763 2.0 2.0 2.0 1.7 4775 chr2L 17687502 intron CadN - chr2L 17689890 intron CadN - chr2L 17692277 intron CadN - chr2L_5_17685001 chr2L_17685001 RAL-235 436 chr2L 17723769 17723802 chr2L 17723882 17723915 12 112 4.0 2.5 3.2 2.9 146 chr2L 17723769 intron CadN - chr2L 17723842 intron CadN - chr2L 17723915 intron CadN - chr2L_12_17720001 chr2L_17720001 RAL-235 437 chr2L 17727851 17727879 chr2L 17729338 17729340 hobo 4 1480 1.0 8.5 4.8 0.7 1489 chr2L 17727851 intron CadN - chr2L 17728596 intron CadN - chr2L 17729340 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-235 438 chr2L 17740263 17740283 chr2L 17740417 17740450 4 159 4.5 4.0 4.2 0.8 187 chr2L 17740263 intron CadN - chr2L 17740356 intron CadN - chr2L 17740450 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-235 439 chr2L 17748025 17748029 chr2L 17748075 17748119 4 68 2.0 2.0 2.0 1.3 94 chr2L 17748025 intron CadN - chr2L 17748072 intron CadN - chr2L 17748119 intron CadN - chr2L_4_17745001 chr2L_17745001 RAL-235 440 chr2L 17796010 17796043 chr2L 17796111 17796144 8 99 3.5 5.0 4.2 1.5 134 chr2L 17796010 intron CadN2 - chr2L 17796077 intron CadN2 - chr2L 17796144 intron CadN2 - chr2L_8_17795001 chr2L_17795001 RAL-235 441 chr2L 17819899 17819939 chr2L 17825123 17825146 copia 10 5221 4.5 2.0 3.2 2.4 5247 chr2L 17819899 intron CadN2 - chr2L 17822522 intron CadN2 - chr2L 17825146 intron CadN2 - chr2L_10_17820001 chr2L_17820001 RAL-235 442 chr2L 17863594 17863641 chr2L 17863695 17863702 11 90 5.0 6.0 5.5 1.7 108 chr2L 17863594 intron CadN2 - chr2L 17863648 intron CadN2 - chr2L 17863702 intron CadN2 - chr2L_11_17860001 chr2L_17860001 RAL-235 443 chr2L 17879987 17880031 chr2L 17880084 17880138 10 101 2.5 2.5 2.5 2.9 151 chr2L 17879987 intergenic not near genes chr2L 17880062 intergenic not near genes chr2L 17880138 intergenic not near genes chr2L_10_17880001 chr2L_17880001 RAL-235 444 chr2L 17911940 17911987 chr2L 17914138 17914185 pogo 5 2194 5.0 6.5 5.8 0.7 2245 chr2L 17911940 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914185 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-235 445 chr2L 17944112 17944140 chr2L 17944210 17944237 6 94 7.5 1.5 4.5 1.1 125 chr2L 17944112 intergenic not near genes chr2L 17944174 intergenic not near genes chr2L 17944237 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-235 446 chr2L 17951939 17951979 chr2L 17953425 17953451 hobo 11 1483 5.0 5.5 5.2 1.8 1512 chr2L 17951939 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953451 intergenic not near genes chr2L_11_17950001 chr2L_17950001 RAL-235 447 chr2L 18051872 18051900 chr2L 18061023 18061036 roo 7 9160 6.5 4.5 5.5 1.1 9164 chr2L 18051872 intron rdo + chr2L 18056454 intron rdo + chr2L 18061036 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-235 448 chr2L 18110083 18110100 chr2L 18110189 18110220 6 115 3.5 2.5 3.0 1.5 137 chr2L 18110083 intergenic not near genes chr2L 18110152 intergenic not near genes chr2L 18110220 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-235 449 chr2L 18111227 18111274 chr2L 18111334 18111349 7 98 3.0 5.5 4.2 1.3 122 chr2L 18111227 intergenic not near genes chr2L 18111288 intergenic not near genes chr2L 18111349 intergenic not near genes chr2L_7_18110001 chr2L_18110001 RAL-235 450 chr2L 18227041 18227058 chr2L 18227141 18227173 6 111 5.5 5.0 5.2 1.0 132 chr2L 18227041 intron CG42750 - chr2L 18227107 intron CG42750 - chr2L 18227173 intron CG42750 - chr2L_6_18225001 chr2L_18225001 RAL-235 451 chr2L 18233329 18233369 chr2L 18233442 18233482 13 113 4.5 3.0 3.8 2.7 153 chr2L 18233329 intron CG42750 - chr2L 18233406 intron CG42750 - chr2L 18233482 intron CG42750 - chr2L_13_18230001 chr2L_18230001 RAL-235 452 chr2L 18326898 18326951 chr2L 18327028 18327080 12 120 6.0 3.0 4.5 2.2 182 chr2L 18326898 intron Fas3 + chr2L 18326989 intron Fas3 + chr2L 18327080 intron Fas3 + chr2L_12_18325001 chr2L_18325001 RAL-235 453 chr2L 18364243 18364283 chr2L 18364363 18364403 10 119 4.5 2.5 3.5 2.2 160 chr2L 18364243 intron Fas3 + chr2L 18364323 intron Fas3 + chr2L 18364403 intron Fas3 + chr2L_10_18360001 chr2L_18360001 RAL-235 454 chr2L 18373076 18373104 chr2L 18373224 18373260 11 150 7.0 2.0 4.5 2.0 184 chr2L 18373076 intron Fas3 + chr2L 18373168 intron Fas3 + chr2L 18373260 intron Fas3 + chr2L_11_18370001 chr2L_18370001 RAL-235 455 chr2L 18408009 18408032 chr2L 18412813 18412823 Doc 6 4802 6.0 0.0 3.0 1.5 4814 chr2L 18408009 intergenic not near genes chr2L 18410416 intergenic not near genes chr2L 18412823 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-235 456 chr2L 18436658 18436678 chr2L 18436794 18436808 5 136 7.0 6.0 6.5 0.7 150 chr2L 18436658 intergenic not near genes chr2L 18436733 intergenic not near genes chr2L 18436808 intergenic not near genes chr2L_5_18435001 chr2L_18435001 RAL-235 457 chr2L 18546220 18546252 chr2L 18546315 18546356 6 101 3.0 1.0 2.0 2.0 136 chr2L 18546220 intron Pde11 - chr2L 18546288 intron Pde11 - chr2L 18546356 intron Pde11 - chr2L_6_18545001 chr2L_18545001 RAL-235 458 chr2L 18589526 18589566 chr2L 18594025 18594076 6 4509 36.5 5.5 21.0 0.3 4550 chr2L 18589526 intron Pde11 - chr2L 18591801 exon CG15160 + chr2L 18594076 exon CG15160 + chr2L_6_18590001 chr2L_18590001 RAL-235 459 chr2L 18741381 18741408 chr2L 18741474 18741526 4 107 1.0 1.5 1.2 1.8 145 chr2L 18741381 intergenic not near genes chr2L 18741454 intergenic not near genes chr2L 18741526 intergenic not near genes chr2L_4_18740001 chr2L_18740001 RAL-235 460 chr2L 18811394 18811431 chr2L 18811490 18811533 6 101 8.0 0.0 4.0 1.2 139 chr2L 18811394 intergenic CG10570 -,CG42502 - chr2L 18811464 intergenic CG10570 -,CG42502 - chr2L 18811533 intergenic not near genes chr2L_6_18810001 chr2L_18810001 RAL-235 461 chr2L 18812552 18812569 chr2L 18812823 18812852 5 280 5.0 4.5 4.8 0.9 300 chr2L 18812552 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-235 462 chr2L 18812579 18812590 chr2L 18812819 18812873 7 269 4.0 3.0 3.5 1.6 294 chr2L 18812579 intergenic CG17325 +,CG42305 + chr2L 18812726 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812873 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_7_18810001 chr2L_18810001 RAL-235 463 chr2L 18834094 18834124 chr2L 18834250 18834280 6 154 6.0 9.5 7.8 0.7 186 chr2L 18834094 3` UTR CG10600 - chr2L 18834187 3` UTR CG10600 - chr2L 18834280 3` UTR CG10600 - chr2L_6_18830001 chr2L_18830001 RAL-235 464 chr2L 18883859 18883882 chr2L 18883935 18883984 7 91 3.5 5.0 4.2 1.3 125 chr2L 18883859 intergenic not near genes chr2L 18883922 intergenic not near genes chr2L 18883984 intergenic not near genes chr2L_7_18880001 chr2L_18880001 RAL-235 465 chr2L 18898381 18898417 chr2L 18898483 18898517 9 98 3.0 0.5 1.8 3.2 136 chr2L 18898381 intergenic not near genes chr2L 18898449 intergenic not near genes chr2L 18898517 intergenic not near genes chr2L_9_18895001 chr2L_18895001 RAL-235 466 chr2L 18902610 18902653 chr2L 18902911 18902954 18 299 2.5 4.5 3.5 4.0 344 chr2L 18902610 intergenic not near genes chr2L 18902782 intergenic not near genes chr2L 18902954 intergenic not near genes chr2L_18_18900001 chr2L_18900001 RAL-235 467 chr2L 19147355 19147403 chr2L 19154404 19154433 297 17 7045 3.5 3.0 3.2 4.0 7078 chr2L 19147355 intron brat + chr2L 19150894 intron brat + chr2L 19154433 intron brat + chr2L_17_19150001 chr2L_19150001 RAL-235 468 chr2L 19163357 19163397 chr2L 19163458 19163493 9 98 4.0 6.5 5.2 1.5 136 chr2L 19163357 intron brat + chr2L 19163425 intron brat + chr2L 19163493 intron brat + chr2L_9_19160001 chr2L_19160001 RAL-235 469 chr2L 19189700 19189749 chr2L 19189798 19189847 14 95 6.5 3.5 5.0 2.3 147 chr2L 19189700 3` UTR pigeon + chr2L 19189774 3` UTR pigeon + chr2L 19189847 3` UTR pigeon + chr2L_14_19185001 chr2L_19185001 RAL-235 470 chr2L 19189949 19190004 chr2L 19190123 19190177 15 171 3.5 2.5 3.0 3.8 228 chr2L 19189949 intergenic pigeon +,drl + chr2L 19190063 intergenic pigeon +,drl + chr2L 19190177 intergenic drl +,pigeon + chr2L_15_19190001 chr2L_19190001 RAL-235 471 chr2L 19199665 19199702 chr2L 19199744 19199794 6 89 2.0 3.0 2.5 1.7 129 chr2L 19199665 intron drl + chr2L 19199730 intron drl + chr2L 19199794 intron drl + chr2L_6_19195001 chr2L_19195001 RAL-235 472 chr2L 19209599 19209640 chr2L 19209704 19209734 8 101 5.0 4.5 4.8 1.4 135 chr2L 19209599 intergenic not near genes chr2L 19209666 intergenic not near genes chr2L 19209734 intergenic not near genes chr2L_8_19205001 chr2L_19205001 RAL-235 473 chr2L 19241036 19241089 chr2L 19241135 19241182 16 93 1.0 6.0 3.5 3.6 146 chr2L 19241036 intergenic not near genes chr2L 19241109 intergenic not near genes chr2L 19241182 intergenic not near genes chr2L_16_19240001 chr2L_19240001 RAL-235 474 chr2L 19345002 19345050 chr2L 19357231 19357254 blood 11 12225 1.5 4.5 3.0 2.8 12252 chr2L 19345002 intron dnt - chr2L 19351128 intron dnt - chr2L 19357254 intron dnt - chr2L_11_19350001 chr2L_19350001 RAL-235 475 chr2L 19357530 19357568 chr2L 19357635 19357678 9 104 6.5 8.5 7.5 1.1 148 chr2L 19357530 intron dnt - chr2L 19357604 intron dnt - chr2L 19357678 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-235 476 chr2L 19378329 19378374 chr2L 19378429 19378477 14 96 5.0 6.0 5.5 2.2 148 chr2L 19378329 intergenic not near genes chr2L 19378403 intergenic not near genes chr2L 19378477 intergenic not near genes chr2L_14_19375001 chr2L_19375001 RAL-235 477 chr2L 19380498 19380528 chr2L 19380591 19380628 10 94 1.5 2.0 1.8 3.6 130 chr2L 19380498 intergenic CG17350 + chr2L 19380563 intergenic CG17350 + chr2L 19380628 intergenic CG17350 + chr2L_10_19380001 chr2L_19380001 RAL-235 478 chr2L 19405597 19405639 chr2L 19405707 19405728 14 106 4.0 1.5 2.8 3.7 131 chr2L 19405597 intron Pax - chr2L 19405662 intron Pax - chr2L 19405728 intron Pax - chr2L_14_19405001 chr2L_19405001 RAL-235 479 chr2L 19444552 19444581 chr2L 19444641 19444645 8 82 1.5 4.5 3.0 2.0 93 chr2L 19444552 intron,exon RanGAP +,Hs2st - chr2L 19444598 intron,exon RanGAP +,Hs2st - chr2L 19444645 intron,5` UTR RanGAP +,Hs2st - chr2L_8_19440001 chr2L_19440001 RAL-235 480 chr2L 19558505 19558537 chr2L 19558629 19558661 11 119 4.0 5.5 4.8 1.9 156 chr2L 19558505 intron Tep5 + chr2L 19558583 intron Tep5 + chr2L 19558661 intron Tep5 + chr2L_11_19555001 chr2L_19555001 RAL-235 481 chr2L 19559993 19560039 chr2L 19560262 19560311 11 269 4.5 2.0 3.2 2.6 318 chr2L 19559993 exon Tep5 + chr2L 19560152 exon Tep5 + chr2L 19560311 intron Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-235 482 chr2L 19560819 19560859 chr2L 19560919 19560943 9 96 3.0 0.0 1.5 3.6 124 chr2L 19560819 exon Tep5 + chr2L 19560881 intron Tep5 + chr2L 19560943 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-235 483 chr2L 19561341 19561364 chr2L 19561487 19561520 9 155 3.5 5.5 4.5 1.6 179 chr2L 19561341 exon Tep5 + chr2L 19561430 exon Tep5 + chr2L 19561520 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-235 484 chr2L 19562037 19562081 chr2L 19562142 19562185 11 102 5.0 4.0 4.5 2.0 148 chr2L 19562037 exon Tep5 + chr2L 19562111 intron Tep5 + chr2L 19562185 exon Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-235 485 chr2L 19601558 19601598 chr2L 19601655 19601693 14 90 1.5 4.5 3.0 3.5 135 chr2L 19601558 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601693 intron,intron Lar +,CR44978 - chr2L_14_19600001 chr2L_19600001 RAL-235 486 chr2L 19620081 19620132 chr2L 19621081 19621141 jockey 9 995 3.5 3.0 3.2 2.1 1060 chr2L 19620081 intron Lar + chr2L 19620611 intron Lar + chr2L 19621141 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-235 487 chr2L 19652552 19652604 chr2L 19674006 19674022 opus 19 21449 5.5 8.0 6.8 2.4 21470 chr2L 19652552 intron Lar + chr2L 19663287 intron Lar + chr2L 19674022 intron Lar + chr2L_19_19660001 chr2L_19660001 RAL-235 488 chr2L 19697118 19697166 chr2L 19697231 19697274 7 107 2.0 2.5 2.2 2.2 156 chr2L 19697118 intron Lar + chr2L 19697196 intron Lar + chr2L 19697274 intron Lar + chr2L_7_19695001 chr2L_19695001 RAL-235 489 chr2L 19703540 19703568 chr2L 19712683 19712712 roo 10 9149 4.5 2.5 3.5 2.2 9172 chr2L 19703540 intron Lar + chr2L 19708126 intron Lar + chr2L 19712712 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-235 490 chr2L 19712691 19712720 chr2L 19712773 19712773 6 80 2.0 4.0 3.0 1.5 82 chr2L 19712691 intron Lar + chr2L 19712732 intron Lar + chr2L 19712773 intron Lar + chr2L_6_19710001 chr2L_19710001 RAL-235 491 chr2L 19737362 19737380 chr2L 19740823 19740845 1360 6 3469 4.0 4.5 4.2 1.2 3483 chr2L 19737362 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740845 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-235 492 chr2L 19762801 19762839 chr2L 19763055 19763095 pogo 15 257 2.5 6.5 4.5 2.7 294 chr2L 19762801 5` UTR fbp - chr2L 19762948 intron fbp - chr2L 19763095 intron fbp - chr2L_15_19760001 chr2L_19760001 RAL-235 493 chr2L 19773148 19773187 chr2L 19773254 19773294 14 101 6.0 2.5 4.2 2.7 146 chr2L 19773148 intergenic not near genes chr2L 19773221 intergenic not near genes chr2L 19773294 intergenic not near genes chr2L_14_19770001 chr2L_19770001 RAL-235 494 chr2L 19776640 19776660 chr2L 19776740 19776760 5 97 8.5 4.0 6.2 0.7 120 chr2L 19776640 3` UTR CdGAPr - chr2L 19776700 3` UTR CdGAPr - chr2L 19776760 3` UTR CdGAPr - chr2L_5_19775001 chr2L_19775001 RAL-235 495 chr2L 19824416 19824428 chr2L 19824512 19824531 4 101 3.0 4.5 3.8 0.8 115 chr2L 19824416 intron sick + chr2L 19824474 intron sick + chr2L 19824531 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-235 496 chr2L 19837274 19837296 chr2L 19837374 19837395 5 99 4.0 3.5 3.8 1.0 121 chr2L 19837274 intron sick + chr2L 19837334 intron sick + chr2L 19837395 intron sick + chr2L_5_19835001 chr2L_19835001 RAL-235 497 chr2L 19911286 19911305 chr2L 19911381 19911413 7 99 5.0 4.0 4.5 1.3 127 chr2L 19911286 intron,3` UTR sick +,CR43097 - chr2L 19911350 intron,3` UTR sick +,CR43097 - chr2L 19911413 intron,3` UTR sick +,CR43097 - chr2L_7_19910001 chr2L_19910001 RAL-235 498 chr2L 19911307 19911322 chr2L 19911379 19911430 6 92 3.0 3.0 3.0 1.5 123 chr2L 19911307 intron,3` UTR sick +,CR43097 - chr2L 19911368 intron,3` UTR sick +,CR43097 - chr2L 19911430 intron,3` UTR sick +,CR43097 - chr2L_6_19910001 chr2L_19910001 RAL-235 499 chr2L 19912744 19912772 chr2L 19912877 19912910 6 136 0.0 4.5 2.2 1.9 166 chr2L 19912744 intron sick + chr2L 19912827 intron sick + chr2L 19912910 intron sick + chr2L_6_19910001 chr2L_19910001 RAL-235 500 chr2L 19953927 19953980 chr2L 19954027 19954081 15 98 3.0 3.0 3.0 3.8 154 chr2L 19953927 intron sick + chr2L 19954004 intron sick + chr2L 19954081 intron sick + chr2L_15_19950001 chr2L_19950001 RAL-235 501 chr2L 19964828 19964850 chr2L 19964921 19964937 6 94 8.0 5.0 6.5 0.8 109 chr2L 19964828 intron CG10680 + chr2L 19964882 exon CG10680 + chr2L 19964937 exon CG10680 + chr2L_6_19960001 chr2L_19960001 RAL-235 502 chr2L 19964853 19964859 chr2L 19964918 19964962 4 91 5.0 4.5 4.8 0.7 109 chr2L 19964853 exon CG10680 + chr2L 19964908 exon CG10680 + chr2L 19964962 exon CG10680 + chr2L_4_19960001 chr2L_19960001 RAL-235 503 chr2L 20005880 20005905 chr2L 20010954 20011001 flea 10 5090 5.0 6.0 5.5 1.5 5121 chr2L 20005880 intron CG43861 - chr2L 20008440 intron CG43861 - chr2L 20011001 intron CG43861 - chr2L_10_20005001 chr2L_20005001 RAL-235 504 chr2L 20022072 20022103 chr2L 20022202 20022236 17 131 8.5 5.5 7.0 2.1 164 chr2L 20022072 intergenic not near genes chr2L 20022154 intergenic not near genes chr2L 20022236 intergenic not near genes chr2L_17_20020001 chr2L_20020001 RAL-235 505 chr2L 20026593 20026626 chr2L 20026695 20026728 9 95 3.5 4.0 3.8 1.9 135 chr2L 20026593 intergenic not near genes chr2L 20026660 intergenic not near genes chr2L 20026728 intergenic not near genes chr2L_9_20025001 chr2L_20025001 RAL-235 506 chr2L 20041414 20041461 chr2L 20041519 20041564 10 96 4.0 5.0 4.5 1.8 150 chr2L 20041414 intron sNPF + chr2L 20041489 intron sNPF + chr2L 20041564 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-235 507 chr2L 20079496 20079547 chr2L 20079637 20079688 18 137 4.5 1.0 2.8 4.7 192 chr2L 20079496 intron,intron neb +,fok - chr2L 20079592 intron,intron neb +,fok - chr2L 20079688 intron,intron neb +,fok - chr2L_18_20075001 chr2L_20075001 RAL-235 508 chr2L 20098696 20098747 chr2L 20098999 20099050 14 302 2.5 1.0 1.8 5.0 354 chr2L 20098696 intron Kua + chr2L 20098873 intron Kua + chr2L 20099050 intron Kua + chr2L_14_20095001 chr2L_20095001 RAL-235 509 chr2L 20122624 20122650 chr2L 20122728 20122761 9 108 8.5 7.0 7.8 1.0 137 chr2L 20122624 intergenic not near genes chr2L 20122692 intergenic not near genes chr2L 20122761 intergenic not near genes chr2L_9_20120001 chr2L_20120001 RAL-235 510 chr2L 20226246 20226288 chr2L 20226348 20226386 8 92 1.5 8.0 4.8 1.4 140 chr2L 20226246 intergenic not near genes chr2L 20226316 intergenic not near genes chr2L 20226386 intergenic not near genes chr2L_8_20225001 chr2L_20225001 RAL-235 511 chr2L 20236497 20236542 chr2L 20236590 20236637 11 93 2.5 6.0 4.2 2.1 140 chr2L 20236497 intergenic not near genes chr2L 20236567 intergenic not near genes chr2L 20236637 intergenic not near genes chr2L_11_20235001 chr2L_20235001 RAL-235 512 chr2L 20272106 20272121 chr2L 20282827 20282846 copia 4 10727 10.0 6.5 8.2 0.4 10740 chr2L 20272106 intergenic not near genes chr2L 20277476 intergenic not near genes chr2L 20282846 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-235 513 chr2L 20272122 20272135 chr2L 20282823 20282866 copia 9 10723 7.5 5.5 6.5 1.2 10744 chr2L 20272122 intergenic not near genes chr2L 20277494 intergenic not near genes chr2L 20282866 intergenic not near genes chr2L_9_20275001 chr2L_20275001 RAL-235 514 chr2L 20294289 20294333 chr2L 20294390 20294442 11 106 1.5 4.0 2.8 2.9 153 chr2L 20294289 intergenic CG12617 + chr2L 20294366 intergenic CG12617 + chr2L 20294442 intergenic CG12617 + chr2L_11_20290001 chr2L_20290001 RAL-235 515 chr2L 20296491 20296539 chr2L 20296590 20296640 10 100 2.5 0.5 1.5 4.0 149 chr2L 20296491 intergenic CR43414 - chr2L 20296566 intergenic CR43414 - chr2L 20296640 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-235 516 chr2L 20303171 20303191 chr2L 20310650 20310678 blood 7 7484 0.0 6.5 3.2 1.7 7507 chr2L 20303171 intergenic not near genes chr2L 20306924 intergenic not near genes chr2L 20310678 intergenic not near genes chr2L_7_20305001 chr2L_20305001 RAL-235 517 chr2L 20310876 20310916 chr2L 20310959 20311015 10 94 0.5 5.5 3.0 2.5 139 chr2L 20310876 intergenic spir + chr2L 20310946 intergenic spir + chr2L 20311015 intergenic spir + chr2L_10_20310001 chr2L_20310001 RAL-235 518 chr2L 20312710 20312751 chr2L 20313030 20313065 7 315 3.0 2.5 2.8 1.8 355 chr2L 20312710 intron spir + chr2L 20312888 intron spir + chr2L 20313065 intron spir + chr2L_7_20310001 chr2L_20310001 RAL-235 519 chr2L 20315686 20315735 chr2L 20315794 20315846 12 104 2.5 3.0 2.8 3.2 160 chr2L 20315686 intron spir + chr2L 20315766 intron spir + chr2L 20315846 intron spir + chr2L_12_20315001 chr2L_20315001 RAL-235 520 chr2L 20338700 20338738 chr2L 20338794 20338823 5 91 1.0 4.5 2.8 1.3 123 chr2L 20338700 intron spir + chr2L 20338762 intron spir + chr2L 20338823 intron spir + chr2L_5_20335001 chr2L_20335001 RAL-235 521 chr2L 20370091 20370130 chr2L 20370274 20370298 6 184 5.0 6.0 5.5 0.9 207 chr2L 20370091 intergenic not near genes chr2L 20370194 intergenic not near genes chr2L 20370298 intergenic not near genes chr2L_6_20370001 chr2L_20370001 RAL-235 522 chr2L 20372200 20372260 chr2L 20372470 20372481 pogo 7 260 1.5 5.5 3.5 1.6 281 chr2L 20372200 intergenic Ugt37a1 - chr2L 20372340 intergenic Ugt37a1 - chr2L 20372481 exon Ugt37a1 - chr2L_7_20370001 chr2L_20370001 RAL-235 523 chr2L 20376187 20376237 chr2L 20377470 20377505 6 1276 24.0 7.5 15.8 0.4 1318 chr2L 20376187 intergenic not near genes chr2L 20376846 intergenic CG16798 - chr2L 20377505 exon CG16798 - chr2L_6_20375001 chr2L_20375001 RAL-235 524 chr2L 20379080 20379093 chr2L 20379188 20379201 6 108 3.0 3.0 3.0 1.5 121 chr2L 20379080 intron CG16798 - chr2L 20379140 intron CG16798 - chr2L 20379201 intron CG16798 - chr2L_6_20375001 chr2L_20375001 RAL-235 525 chr2L 20383257 20383299 chr2L 20383360 20383362 4 88 7.0 2.5 4.8 0.7 105 chr2L 20383257 intergenic not near genes chr2L 20383310 intergenic not near genes chr2L 20383362 intergenic not near genes chr2L_4_20380001 chr2L_20380001 RAL-235 526 chr2L 20395473 20395521 chr2L 20395673 20395721 12 198 5.5 4.0 4.8 2.1 248 chr2L 20395473 intron CG10947 - chr2L 20395597 intron CG10947 - chr2L 20395721 intron CG10947 - chr2L_12_20395001 chr2L_20395001 RAL-235 527 chr2L 20498010 20498055 chr2L 20498118 20498136 21 111 4.5 4.5 4.5 3.8 126 chr2L 20498010 intergenic not near genes chr2L 20498073 intergenic not near genes chr2L 20498136 intergenic not near genes chr2L_21_20495001 chr2L_20495001 RAL-235 528 chr2L 20498669 20498697 chr2L 20498788 20498794 10 116 7.5 5.5 6.5 1.3 125 chr2L 20498669 intergenic not near genes chr2L 20498732 intergenic not near genes chr2L 20498794 intergenic not near genes chr2L_10_20495001 chr2L_20495001 RAL-235 529 chr2L 20502966 20502975 chr2L 20508352 20508366 4 5386 6.5 31.0 18.8 0.2 5400 chr2L 20502966 intergenic not near genes chr2L 20505666 intergenic not near genes chr2L 20508366 intergenic not near genes chr2L_4_20505001 chr2L_20505001 RAL-235 530 chr2L 20524168 20524207 chr2L 20524270 20524294 4 84 7.5 0.0 3.8 0.8 126 chr2L 20524168 intergenic not near genes chr2L 20524231 intergenic not near genes chr2L 20524294 intergenic not near genes chr2L_4_20520001 chr2L_20520001 RAL-235 531 chr2L 20549116 20549155 chr2L 20549218 20549257 20 99 3.5 1.0 2.2 6.2 141 chr2L 20549116 intergenic not near genes chr2L 20549186 intergenic not near genes chr2L 20549257 intergenic not near genes chr2L_20_20545001 chr2L_20545001 RAL-235 532 chr2L 20553171 20553217 chr2L 20553260 20553313 14 89 4.0 7.0 5.5 2.2 142 chr2L 20553171 intergenic not near genes chr2L 20553242 intergenic not near genes chr2L 20553313 intergenic not near genes chr2L_14_20550001 chr2L_20550001 RAL-235 533 chr2L 20568649 20568680 chr2L 20569053 20569089 X-element 9 408 5.0 3.5 4.2 1.7 440 chr2L 20568649 intron CR45347 + chr2L 20568869 intron CR45347 + chr2L 20569089 intron CR45347 + chr2L_9_20565001 chr2L_20565001 RAL-235 534 chr2L 20576203 20576229 chr2L 20583687 20583717 blood 5 7487 7.5 4.5 6.0 0.7 7514 chr2L 20576203 intergenic CR45347 + chr2L 20579960 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-235 535 chr2L 20601771 20601816 chr2L 20601869 20601914 10 96 3.0 3.0 3.0 2.5 143 chr2L 20601771 intron CR44909 - chr2L 20601842 intron CR44909 - chr2L 20601914 intron CR44909 - chr2L_10_20600001 chr2L_20600001 RAL-235 536 chr2L 20602719 20602749 chr2L 20602806 20602857 9 102 0.5 3.5 2.0 3.0 138 chr2L 20602719 intron CR44909 - chr2L 20602788 intron CR44909 - chr2L 20602857 intron CR44909 - chr2L_9_20600001 chr2L_20600001 RAL-235 537 chr2L 20639482 20639531 chr2L 20639777 20639821 INE-1 11 291 2.0 3.0 2.5 3.1 339 chr2L 20639482 intergenic not near genes chr2L 20639652 intergenic CG31680 + chr2L 20639821 intergenic CG31680 + chr2L_11_20635001 chr2L_20635001 RAL-235 538 chr2L 20643322 20643333 chr2L 20643474 20643485 4 150 6.5 5.0 5.8 0.6 163 chr2L 20643322 intergenic phr6-4 -,CG17470 - chr2L 20643404 3` UTR phr6-4 - chr2L 20643485 3` UTR phr6-4 - chr2L_4_20640001 chr2L_20640001 RAL-235 539 chr2L 20674813 20674858 chr2L 20674918 20674951 10 98 5.0 0.0 2.5 2.9 138 chr2L 20674813 intron CG31678 - chr2L 20674882 intron CG31678 - chr2L 20674951 intron CG31678 - chr2L_10_20670001 chr2L_20670001 RAL-235 540 chr2L 20818514 20818537 chr2L 20818591 20818639 6 86 5.0 5.0 5.0 1.0 125 chr2L 20818514 exon CheB38a - chr2L 20818576 intergenic CheB38a - chr2L 20818639 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-235 541 chr2L 20835794 20835840 chr2L 20836531 20836566 Quasimodo 23 734 5.0 5.0 5.0 3.8 772 chr2L 20835794 5` UTR Oseg5 - chr2L 20836180 intergenic Oseg5 -,Spn38F - chr2L 20836566 intergenic Spn38F - chr2L_23_20835001 chr2L_20835001 RAL-235 542 chr2L 20891514 20891533 chr2L 20896635 20896654 jockey 4 5119 4.0 3.5 3.8 0.8 5140 chr2L 20891514 intron,intron CG43739 -,sky - chr2L 20894084 intron,intron CG43739 -,sky - chr2L 20896654 intron,intron CG43739 -,sky - chr2L_4_20890001 chr2L_20890001 RAL-235 543 chr2L 20901438 20901483 chr2L 20902617 20902652 1360 4 1167 2.0 1.5 1.8 1.4 1214 chr2L 20901438 intron,intron CG43739 -,sky - chr2L 20902045 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-235 544 chr2L 20946927 20946944 chr2L 20947034 20947045 5 104 11.0 6.5 8.8 0.5 118 chr2L 20946927 intergenic CR44606 - chr2L 20946986 intergenic CR44606 - chr2L 20947045 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-235 545 chr2L 20946945 20946958 chr2L 20947031 20947064 6 100 10.0 5.5 7.8 0.7 119 chr2L 20946945 intergenic CR44606 - chr2L 20947004 intergenic CR44606 - chr2L 20947064 intergenic CR44606 - chr2L_6_20945001 chr2L_20945001 RAL-235 546 chr2L 20958024 20958053 chr2L 20958345 20958374 11 319 9.5 4.5 7.0 1.4 350 chr2L 20958024 intergenic not near genes chr2L 20958199 intergenic not near genes chr2L 20958374 intergenic not near genes chr2L_11_20955001 chr2L_20955001 RAL-235 547 chr2L 20958890 20958929 chr2L 20958987 20959019 10 98 4.5 6.0 5.2 1.6 129 chr2L 20958890 intergenic not near genes chr2L 20958954 intergenic not near genes chr2L 20959019 intergenic not near genes chr2L_10_20955001 chr2L_20955001 RAL-235 548 chr2L 20976633 20976671 chr2L 20981468 20981490 X-element 8 4832 4.0 4.0 4.0 1.6 4857 chr2L 20976633 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981490 intron CG42238 - chr2L_8_20975001 chr2L_20975001 RAL-235 549 chr2L 21020287 21020306 chr2L 21023948 21023998 NOF 4 3684 4.0 2.5 3.2 1.0 3711 chr2L 21020287 intron CG42238 - chr2L 21022142 intron CG42238 - chr2L 21023998 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-235 550 chr2L 21041127 21041165 chr2L 21049403 21049430 Tirant 13 8272 5.0 7.0 6.0 1.9 8303 chr2L 21041127 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049430 intron CG42238 - chr2L_13_21045001 chr2L_21045001 RAL-235 551 chr2L 21110635 21110687 chr2L 21110735 21110777 9 103 3.0 4.5 3.8 1.9 142 chr2L 21110635 intron Nhe2 + chr2L 21110706 intron Nhe2 + chr2L 21110777 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-235 552 chr2L 21118229 21118273 chr2L 21118415 21118464 14 188 3.0 7.0 5.0 2.3 235 chr2L 21118229 intron Nhe2 + chr2L 21118346 intron Nhe2 + chr2L 21118464 intron Nhe2 + chr2L_14_21115001 chr2L_21115001 RAL-235 553 chr2L 21199210 21199252 chr2L 21199302 21199348 10 93 2.5 3.0 2.8 2.6 138 chr2L 21199210 intergenic CG31624 -,Ret - chr2L 21199279 3` UTR CG31624 - chr2L 21199348 3` UTR CG31624 - chr2L_10_21195001 chr2L_21195001 RAL-235 554 chr2L 21218967 21219010 chr2L 21219256 21219304 10 290 4.0 3.5 3.8 2.1 337 chr2L 21218967 intron Atg18b - chr2L 21219136 intron Atg18b - chr2L 21219304 intron Atg18b - chr2L_10_21215001 chr2L_21215001 RAL-235 555 chr2L 21246518 21246541 chr2L 21246604 21246629 10 101 3.0 1.0 2.0 3.3 111 chr2L 21246518 intron Hr39 + chr2L 21246574 intron Hr39 + chr2L 21246629 intron Hr39 + chr2L_10_21245001 chr2L_21245001 RAL-235 556 chr2L 21347533 21347583 chr2L 21355024 21355064 blood 16 7488 3.5 4.0 3.8 3.3 7531 chr2L 21347533 intron Tsp39D + chr2L 21351298 intron Tsp39D + chr2L 21355064 intron Tsp39D + chr2L_16_21350001 chr2L_21350001 RAL-235 557 chr2L 21355591 21355636 chr2L 21355755 21355801 21 162 4.0 3.5 3.8 4.4 210 chr2L 21355591 exon Tsp39D + chr2L 21355696 intron Tsp39D + chr2L 21355801 intron Tsp39D + chr2L_21_21355001 chr2L_21355001 RAL-235 558 chr2L 21597025 21597056 chr2L 21604773 21604814 roo 9 7760 3.0 2.5 2.8 2.4 7789 chr2L 21597025 intergenic not near genes chr2L 21600920 intergenic not near genes chr2L 21604814 intergenic not near genes chr2L_9_21600001 chr2L_21600001 RAL-235 559 chr2L 21740068 21740097 chr2L 21740186 21740215 7 118 3.0 4.5 3.8 1.5 147 chr2L 21740068 3` UTR step - chr2L 21740142 3` UTR step - chr2L 21740215 3` UTR step - chr2L_7_21740001 chr2L_21740001 RAL-235 560 chr2L 21748597 21748643 chr2L 21749894 21749943 15 1302 32.0 37.0 34.5 0.4 1346 chr2L 21748597 intron step - chr2L 21749270 intron step - chr2L 21749943 intron step - chr2L_15_21745001 chr2L_21745001 RAL-235 561 chr2L 21855458 21855513 chr2L 21855564 21855620 14 101 3.0 2.5 2.8 3.7 162 chr2L 21855458 intron CR44917 + chr2L 21855539 intron CR44917 + chr2L 21855620 intron CR44917 + chr2L_14_21855001 chr2L_21855001 RAL-235 562 chr2L 21976183 21976223 chr2L 21976353 21976365 7 169 4.0 3.0 3.5 1.6 182 chr2L 21976183 intergenic not near genes chr2L 21976274 intergenic not near genes chr2L 21976365 intergenic not near genes chr2L_7_21975001 chr2L_21975001 RAL-235 563 chr2L 21981667 21981714 chr2L 21990852 21990887 roo 10 9173 4.0 8.5 6.2 1.4 9220 chr2L 21981667 exon CG2528 - chr2L 21986277 intron CG2528 - chr2L 21990887 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-235 564 chr2L 21994612 21994634 chr2L 21994707 21994730 7 95 6.0 5.0 5.5 1.1 118 chr2L 21994612 intergenic not near genes chr2L 21994671 intergenic not near genes chr2L 21994730 intergenic not near genes chr2L_7_21990001 chr2L_21990001 RAL-235 565 chr2L 21994638 21994651 chr2L 21994699 21994744 6 88 5.5 5.0 5.2 1.0 106 chr2L 21994638 intergenic not near genes chr2L 21994691 intergenic not near genes chr2L 21994744 intergenic not near genes chr2L_6_21990001 chr2L_21990001 RAL-235 566 chr2L 22058488 22058538 chr2L 22058604 22058654 18 112 7.0 7.0 7.0 2.2 166 chr2L 22058488 intergenic not near genes chr2L 22058571 intergenic not near genes chr2L 22058654 intergenic not near genes chr2L_18_22055001 chr2L_22055001 RAL-235 567 chr2L 22107355 22107395 chr2L 22107502 22107509 7 140 8.5 2.5 5.5 1.1 154 chr2L 22107355 intergenic CG10834 - chr2L 22107432 intergenic CG10834 - chr2L 22107509 intergenic CG10834 - chr2L_7_22105001 chr2L_22105001 RAL-235 568 chr2L 22548927 22548937 chr2L 22550156 22550180 1360 5 1240 1.0 9.0 5.0 0.8 1253 chr2L 22548927 intergenic CG17490 + chr2L 22549554 intergenic not near genes chr2L 22550180 intergenic CG17493 + chr2L_5_22545001 chr2L_22545001 RAL-235 569 chr2L 22581955 22581983 chr2L 22583764 22583784 S-element 5 1807 6.5 3.5 5.0 0.8 1829 chr2L 22581955 intron CG17494 + chr2L 22582870 intron CG17494 + chr2L 22583784 intron CG17494 + chr2L_5_22580001 chr2L_22580001 RAL-235 570 chr2L 22581989 22582002 chr2L 22583759 22583811 S-element 8 1799 3.5 3.0 3.2 1.9 1822 chr2L 22581989 intron CG17494 + chr2L 22582900 intron CG17494 + chr2L 22583811 intron CG17494 + chr2L_8_22580001 chr2L_22580001 RAL-235 571 chr2L 22674054 22674077 chr2L 22674144 22674174 9 95 4.5 2.0 3.2 2.1 120 chr2L 22674054 intron CG40006 - chr2L 22674114 intron CG40006 - chr2L 22674174 intron CG40006 - chr2L_9_22670001 chr2L_22670001 RAL-235 572 chr2L 22679807 22679814 chr2L 22684583 22684606 F-element 4 4786 12.5 11.0 11.8 0.3 4799 chr2L 22679807 intron CG40006 - chr2L 22682206 intron CG40006 - chr2L 22684606 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-235 573 chr2L 22679816 22679831 chr2L 22684572 22684620 F-element 6 4783 6.0 9.5 7.8 0.7 4804 chr2L 22679816 intron CG40006 - chr2L 22682218 intron CG40006 - chr2L 22684620 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-235 574 chr2L 22750700 22750741 chr2L 22750810 22750851 10 109 6.0 3.5 4.8 1.7 151 chr2L 22750700 intron CG40006 - chr2L 22750776 intron CG40006 - chr2L 22750851 intron CG40006 - chr2L_10_22750001 chr2L_22750001 RAL-235 575 chr2L 22776405 22776449 chr2L 22778214 22778258 S-element 18 1808 6.5 5.5 6.0 2.6 1853 chr2L 22776405 intergenic not near genes chr2L 22777332 intergenic not near genes chr2L 22778258 intergenic not near genes chr2L_18_22775001 chr2L_22775001 RAL-235 576 chr2L 22968552 22968580 chr2L 22968658 22968659 5 103 1.0 6.0 3.5 1.1 107 chr2L 22968552 intergenic not near genes chr2L 22968606 intergenic not near genes chr2L 22968659 intergenic not near genes chr2L_5_22965001 chr2L_22965001 RAL-235 577 chr2R 1365849 1365894 chr2R 1365976 1366026 20 127 4.5 4.5 4.5 3.6 177 chr2R 1365849 intron l(2)41Ab + chr2R 1365938 intron l(2)41Ab + chr2R 1366026 intron l(2)41Ab + chr2R_20_1365001 chr2R_1365001 RAL-235 578 chr2R 1516586 1516600 chr2R 1521334 1521341 1731 6 4747 15.0 9.5 12.2 0.5 4755 chr2R 1516586 exon Maf1 - chr2R 1518964 intron Maf1 - chr2R 1521341 5` UTR Maf1 - chr2R_6_1515001 chr2R_1515001 RAL-235 579 chr2R 1755929 1755974 chr2R 1756063 1756108 6 134 2.5 3.0 2.8 1.6 179 chr2R 1755929 intron CG41520 + chr2R 1756018 intron CG41520 + chr2R 1756108 intron CG41520 + chr2R_6_1755001 chr2R_1755001 RAL-235 580 chr2R 2015122 2015162 chr2R 2015209 2015259 9 90 5.0 4.5 4.8 1.6 137 chr2R 2015122 intron CG17684 - chr2R 2015190 intron CG17684 - chr2R 2015259 intron CG17684 - chr2R_9_2015001 chr2R_2015001 RAL-235 581 chr2R 2498983 2499014 chr2R 2508131 2508180 roo 7 9161 6.5 4.0 5.2 1.1 9197 chr2R 2498983 intron MFS17 - chr2R 2503582 intron MFS17 - chr2R 2508180 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-235 582 chr2R 2508287 2508335 chr2R 2508445 2508489 16 155 2.0 3.5 2.8 4.2 202 chr2R 2508287 intron MFS17 - chr2R 2508388 intron MFS17 - chr2R 2508489 intron MFS17 - chr2R_16_2505001 chr2R_2505001 RAL-235 583 chr2R 2529272 2529323 chr2R 2529368 2529415 17 93 5.0 2.5 3.8 3.5 143 chr2R 2529272 intron MFS17 - chr2R 2529344 intron MFS17 - chr2R 2529415 intron MFS17 - chr2R_17_2525001 chr2R_2525001 RAL-235 584 chr2R 3291924 3292101 chr2R 3915101 3915282 4 623182 7.5 21.0 14.2 0.3 623358 chr2R 3291924 intergenic not near genes chr2R 3603603 intergenic not near genes chr2R 3915282 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-235 585 chr2R 3293734 3293762 chr2R 3293832 3293850 5 91 5.5 1.0 3.2 1.2 116 chr2R 3293734 intergenic not near genes chr2R 3293792 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-235 586 chr2R 3515263 3515303 chr2R 3515371 3515411 9 106 21.0 20.0 20.5 0.4 148 chr2R 3515263 intergenic not near genes chr2R 3515337 intergenic not near genes chr2R 3515411 intergenic not near genes chr2R_9_3515001 chr2R_3515001 RAL-235 587 chr2R 3532624 3532642 chr2R 3536087 3536105 Doc 6 3463 5.0 7.5 6.2 0.8 3481 chr2R 3532624 intergenic not near genes chr2R 3534364 intergenic not near genes chr2R 3536105 intergenic not near genes chr2R_6_3530001 chr2R_3530001 RAL-235 588 chr2R 4312945 4312986 chr2R 4313039 4313090 20 100 7.0 4.5 5.8 2.9 145 chr2R 4312945 intergenic not near genes chr2R 4313018 intergenic not near genes chr2R 4313090 intergenic not near genes chr2R_20_4310001 chr2R_4310001 RAL-235 589 chr2R 4621296 4621345 chr2R 4621856 4621905 12 555 3.0 3.0 3.0 3.0 609 chr2R 4621296 3` UTR CR44101 - chr2R 4621600 3` UTR CR44101 - chr2R 4621905 3` UTR CR44101 - chr2R_12_4620001 chr2R_4620001 RAL-235 590 chr2R 4622963 4622986 chr2R 4624112 4624133 1360 7 1151 1.5 6.0 3.8 1.5 1170 chr2R 4622963 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624133 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-235 591 chr2R 4624624 4624665 chr2R 4626549 4626590 Bica 12 1924 5.5 5.0 5.2 1.9 1966 chr2R 4624624 intergenic not near genes chr2R 4625607 intergenic not near genes chr2R 4626590 intergenic not near genes chr2R_12_4625001 chr2R_4625001 RAL-235 592 chr2R 4783399 4783452 chr2R 4783497 4783541 11 89 3.5 5.0 4.2 2.1 142 chr2R 4783399 intergenic not near genes chr2R 4783470 intergenic not near genes chr2R 4783541 intergenic not near genes chr2R_11_4780001 chr2R_4780001 RAL-235 593 chr2R 4821196 4821247 chr2R 4821302 4821347 14 101 4.0 4.0 4.0 2.8 151 chr2R 4821196 intron CG17528 - chr2R 4821272 intron CG17528 - chr2R 4821347 intron CG17528 - chr2R_14_4820001 chr2R_4820001 RAL-235 594 chr2R 4838852 4838903 chr2R 4840395 4840446 transib2 14 1539 5.0 4.0 4.5 2.5 1594 chr2R 4838852 intergenic not near genes chr2R 4839649 intergenic not near genes chr2R 4840446 intergenic not near genes chr2R_14_4835001 chr2R_4835001 RAL-235 595 chr2R 4870725 4870738 chr2R 4871256 4871268 R1A1-element 6 530 4.0 3.5 3.8 1.2 543 chr2R 4870725 intergenic not near genes chr2R 4870996 intergenic not near genes chr2R 4871268 intergenic not near genes chr2R_6_4870001 chr2R_4870001 RAL-235 596 chr2R 5019262 5019307 chr2R 5019367 5019413 9 106 5.5 7.5 6.5 1.2 151 chr2R 5019262 intron Ir41a + chr2R 5019338 intron Ir41a + chr2R 5019413 intron Ir41a + chr2R_9_5015001 chr2R_5015001 RAL-235 597 chr2R 5029031 5029064 chr2R 5029122 5029166 10 91 3.0 6.0 4.5 1.8 135 chr2R 5029031 intergenic not near genes chr2R 5029098 intergenic not near genes chr2R 5029166 intergenic not near genes chr2R_10_5025001 chr2R_5025001 RAL-235 598 chr2R 5078660 5078703 chr2R 5078790 5078826 11 128 6.0 1.5 3.8 2.3 166 chr2R 5078660 intergenic not near genes chr2R 5078743 intergenic not near genes chr2R 5078826 intergenic not near genes chr2R_11_5075001 chr2R_5075001 RAL-235 599 chr2R 5080775 5080819 chr2R 5080881 5080924 10 99 2.0 6.5 4.2 1.9 149 chr2R 5080775 intergenic not near genes chr2R 5080850 intergenic not near genes chr2R 5080924 intergenic not near genes chr2R_10_5080001 chr2R_5080001 RAL-235 600 chr2R 5125242 5125266 chr2R 5125564 5125604 6 327 5.0 3.5 4.2 1.2 362 chr2R 5125242 intron gus - chr2R 5125423 intron gus - chr2R 5125604 intron gus - chr2R_6_5125001 chr2R_5125001 RAL-235 601 chr2R 5140009 5140049 chr2R 5140138 5140173 8 132 2.0 4.5 3.2 1.9 164 chr2R 5140009 intergenic not near genes chr2R 5140091 intergenic not near genes chr2R 5140173 intergenic not near genes chr2R_8_5140001 chr2R_5140001 RAL-235 602 chr2R 5237336 5237372 chr2R 5237437 5237437 7 95 5.5 0.5 3.0 1.8 101 chr2R 5237336 intron Nipped-A - chr2R 5237386 intron Nipped-A - chr2R 5237437 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-235 603 chr2R 5301833 5301864 chr2R 5301931 5301963 6 98 45.5 30.5 38.0 0.2 130 chr2R 5301833 intergenic not near genes chr2R 5301898 intergenic not near genes chr2R 5301963 intergenic not near genes chr2R_6_5300001 chr2R_5300001 RAL-235 604 chr2R 5417980 5418022 chr2R 5420632 5420659 Burdock 13 2648 7.0 7.5 7.2 1.6 2679 chr2R 5417980 intron laccase2 + chr2R 5419320 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_13_5415001 chr2R_5415001 RAL-235 605 chr2R 5473365 5473388 chr2R 5473462 5473487 6 104 2.0 2.0 2.0 2.0 122 chr2R 5473365 intron CG30440 - chr2R 5473426 intron CG30440 - chr2R 5473487 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-235 606 chr2R 5475433 5475478 chr2R 5475717 5475762 18 280 5.0 6.5 5.8 2.6 329 chr2R 5475433 intron CG30440 - chr2R 5475598 intron CG30440 - chr2R 5475762 intron CG30440 - chr2R_18_5475001 chr2R_5475001 RAL-235 607 chr2R 5476337 5476384 chr2R 5476901 5476928 6 557 5.0 3.5 4.2 1.2 591 chr2R 5476337 intron CG30440 - chr2R 5476632 intron CG30440 - chr2R 5476928 intron CG30440 - chr2R_6_5475001 chr2R_5475001 RAL-235 608 chr2R 5485017 5485061 chr2R 5485207 5485251 13 187 2.0 3.0 2.5 3.7 234 chr2R 5485017 intron CG30440 - chr2R 5485134 intron CG30440 - chr2R 5485251 intron CG30440 - chr2R_13_5485001 chr2R_5485001 RAL-235 609 chr2R 5491644 5491692 chr2R 5491757 5491785 11 106 3.5 3.0 3.2 2.6 141 chr2R 5491644 intron CG30440 - chr2R 5491714 intron CG30440 - chr2R 5491785 intron CG30440 - chr2R_11_5490001 chr2R_5490001 RAL-235 610 chr2R 5541664 5541706 chr2R 5541765 5541807 13 101 5.0 7.0 6.0 1.9 143 chr2R 5541664 intron CG30438 + chr2R 5541736 intron CG30438 + chr2R 5541807 intron CG30438 + chr2R_13_5540001 chr2R_5540001 RAL-235 611 chr2R 5543211 5543223 chr2R 5547307 5547326 invader1 6 4101 0.0 9.5 4.8 1.0 4115 chr2R 5543211 intron CG30438 + chr2R 5545268 intron CG30438 + chr2R 5547326 intron CG30438 + chr2R_6_5545001 chr2R_5545001 RAL-235 612 chr2R 5653341 5653388 chr2R 5653460 5653507 14 119 6.5 3.5 5.0 2.3 166 chr2R 5653341 intergenic CG1344 + chr2R 5653424 intergenic CG1344 + chr2R 5653507 intergenic CG1344 + chr2R_14_5650001 chr2R_5650001 RAL-235 613 chr2R 5664267 5664315 chr2R 5664362 5664392 17 91 2.0 4.5 3.2 4.0 125 chr2R 5664267 5` UTR CR45472 + chr2R 5664330 intron CR45472 + chr2R 5664392 intron CR45472 + chr2R_17_5660001 chr2R_5660001 RAL-235 614 chr2R 5701471 5701517 chr2R 5701673 5701719 12 199 6.0 2.5 4.2 2.3 248 chr2R 5701471 intergenic not near genes chr2R 5701595 intergenic not near genes chr2R 5701719 intergenic vlc + chr2R_12_5700001 chr2R_5700001 RAL-235 615 chr2R 5750433 5750450 chr2R 5750543 5750550 10 108 11.0 4.5 7.8 1.1 117 chr2R 5750433 intergenic not near genes chr2R 5750492 intergenic not near genes chr2R 5750550 intergenic not near genes chr2R_10_5750001 chr2R_5750001 RAL-235 616 chr2R 5772522 5772529 chr2R 5772628 5772643 5 112 7.0 3.0 5.0 0.8 121 chr2R 5772522 3` UTR Gp210 + chr2R 5772582 3` UTR Gp210 + chr2R 5772643 3` UTR Gp210 + chr2R_5_5770001 chr2R_5770001 RAL-235 617 chr2R 5814048 5814074 chr2R 5814114 5814171 10 89 1.5 1.5 1.5 4.0 123 chr2R 5814048 intron dpr12 + chr2R 5814110 intron dpr12 + chr2R 5814171 intron dpr12 + chr2R_10_5810001 chr2R_5810001 RAL-235 618 chr2R 5869257 5869306 chr2R 5874353 5874392 flea 13 5091 6.5 4.5 5.5 2.0 5135 chr2R 5869257 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874392 intergenic not near genes chr2R_13_5870001 chr2R_5870001 RAL-235 619 chr2R 5902147 5902179 chr2R 5909726 5909728 17.6 6 7568 4.0 3.0 3.5 1.3 7581 chr2R 5902147 intron CG43366 + chr2R 5905938 intron CG43366 + chr2R 5909728 intron CG43366 + chr2R_6_5905001 chr2R_5905001 RAL-235 620 chr2R 5953069 5953083 chr2R 5953167 5953171 5 95 10.5 0.0 5.2 0.8 102 chr2R 5953069 intergenic not near genes chr2R 5953120 intergenic not near genes chr2R 5953171 intergenic not near genes chr2R_5_5950001 chr2R_5950001 RAL-235 621 chr2R 5991941 5991964 chr2R 5992037 5992072 14 105 3.0 8.5 5.8 2.1 131 chr2R 5991941 intron Src42A + chr2R 5992006 intron Src42A + chr2R 5992072 intron Src42A + chr2R_14_5990001 chr2R_5990001 RAL-235 622 chr2R 6025043 6025189 chr2R 6025131 6025414 10 200 0.5 1.0 0.8 5.6 371 chr2R 6025043 intergenic not near genes chr2R 6025228 intergenic not near genes chr2R 6025414 intergenic not near genes chr2R_10_6025001 chr2R_6025001 RAL-235 623 chr2R 6033429 6033466 chr2R 6033534 6033563 6 98 4.0 6.0 5.0 1.0 134 chr2R 6033429 intron SCAP - chr2R 6033496 intron SCAP - chr2R 6033563 intron SCAP - chr2R_6_6030001 chr2R_6030001 RAL-235 624 chr2R 6037439 6037480 chr2R 6037540 6037548 15 99 1.0 3.5 2.2 4.7 109 chr2R 6037439 intron CG14591 - chr2R 6037494 intron CG14591 - chr2R 6037548 intron CG14591 - chr2R_15_6035001 chr2R_6035001 RAL-235 625 chr2R 6088360 6088389 chr2R 6088463 6088475 7 100 1.5 4.5 3.0 1.8 115 chr2R 6088360 intergenic not near genes chr2R 6088418 intergenic not near genes chr2R 6088475 intergenic not near genes chr2R_7_6085001 chr2R_6085001 RAL-235 626 chr2R 6129334 6129358 chr2R 6129408 6129456 9 83 3.0 3.5 3.2 2.1 122 chr2R 6129334 intron EcR - chr2R 6129395 intron EcR - chr2R 6129456 intron EcR - chr2R_9_6125001 chr2R_6125001 RAL-235 627 chr2R 6168181 6168224 chr2R 6168281 6168321 7 98 4.0 2.0 3.0 1.8 140 chr2R 6168181 intron EcR - chr2R 6168251 intron EcR - chr2R 6168321 intron EcR - chr2R_7_6165001 chr2R_6165001 RAL-235 628 chr2R 6178107 6178130 chr2R 6178248 6178271 4 143 6.0 7.5 6.8 0.5 164 chr2R 6178107 intergenic not near genes chr2R 6178189 intergenic not near genes chr2R 6178271 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-235 629 chr2R 6194671 6194698 chr2R 6194769 6194796 7 100 8.0 2.5 5.2 1.1 125 chr2R 6194671 intron Ptr - chr2R 6194734 intron Ptr - chr2R 6194796 intron Ptr - chr2R_7_6190001 chr2R_6190001 RAL-235 630 chr2R 6236708 6236733 chr2R 6236835 6236859 10 125 0.5 4.5 2.5 2.9 151 chr2R 6236708 intron bin3 + chr2R 6236784 intron bin3 + chr2R 6236859 intron bin3 + chr2R_10_6235001 chr2R_6235001 RAL-235 631 chr2R 6494533 6494549 chr2R 6499291 6499330 F-element 6 4773 0.5 2.5 1.5 2.4 4797 chr2R 6494533 intergenic not near genes chr2R 6496932 intergenic not near genes chr2R 6499330 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-235 632 chr2R 6579758 6579789 chr2R 6584864 6584893 flea 11 5103 12.5 8.5 10.5 1.0 5135 chr2R 6579758 intron jing + chr2R 6582326 intron jing + chr2R 6584893 intron jing + chr2R_11_6580001 chr2R_6580001 RAL-235 633 chr2R 6712586 6712598 chr2R 6712687 6712705 5 106 8.0 6.5 7.2 0.6 119 chr2R 6712586 intron,intron CG3409 -,CG45092 - chr2R 6712646 intron,intron CG3409 -,CG45092 - chr2R 6712705 intron,intron CG3409 -,CG45092 - chr2R_5_6710001 chr2R_6710001 RAL-235 634 chr2R 6952152 6952185 chr2R 6959746 6959783 opus 16 7598 2.0 5.5 3.8 3.3 7631 chr2R 6952152 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959783 intron,intron mim -,CheB42c - chr2R_16_6955001 chr2R_6955001 RAL-235 635 chr2R 7025894 7025923 chr2R 7026003 7026032 10 102 4.5 5.5 5.0 1.7 138 chr2R 7025894 intron Tsp42Ef + chr2R 7025963 intron Tsp42Ef + chr2R 7026032 intron Tsp42Ef + chr2R_10_7025001 chr2R_7025001 RAL-235 636 chr2R 7025924 7025928 chr2R 7025993 7026033 4 96 3.0 4.5 3.8 0.8 109 chr2R 7025924 intron Tsp42Ef + chr2R 7025978 intron Tsp42Ef + chr2R 7026033 intron Tsp42Ef + chr2R_4_7025001 chr2R_7025001 RAL-235 637 chr2R 7029700 7029726 chr2R 7029806 7029826 11 103 3.5 4.0 3.8 2.3 126 chr2R 7029700 intron Tsp42Eg + chr2R 7029763 intron Tsp42Eg + chr2R 7029826 intron Tsp42Eg + chr2R_11_7025001 chr2R_7025001 RAL-235 638 chr2R 7076372 7076415 chr2R 7076470 7076519 16 100 8.0 3.0 5.5 2.5 147 chr2R 7076372 intergenic not near genes chr2R 7076446 intergenic not near genes chr2R 7076519 intergenic not near genes chr2R_16_7075001 chr2R_7075001 RAL-235 639 chr2R 7180986 7181021 chr2R 7181082 7181117 9 90 5.5 6.0 5.8 1.3 131 chr2R 7180986 intron pk + chr2R 7181052 intron pk + chr2R 7181117 intron pk + chr2R_9_7180001 chr2R_7180001 RAL-235 640 chr2R 7196549 7196597 chr2R 7201344 7201387 F-element 19 4791 5.5 0.5 3.0 4.8 4838 chr2R 7196549 intron pk + chr2R 7198968 intron pk + chr2R 7201387 intron pk + chr2R_19_7195001 chr2R_7195001 RAL-235 641 chr2R 7328131 7328153 chr2R 7328247 7328278 9 120 5.5 6.0 5.8 1.3 147 chr2R 7328131 intron,intron Dscam1 -,CR45129 + chr2R 7328204 intron,intron Dscam1 -,CR45129 + chr2R 7328278 intron,intron Dscam1 -,CR45129 + chr2R_9_7325001 chr2R_7325001 RAL-235 642 chr2R 7353387 7353415 chr2R 7353508 7353541 4 123 2.0 5.5 3.8 0.8 154 chr2R 7353387 intron Dscam1 - chr2R 7353464 intron Dscam1 - chr2R 7353541 intron Dscam1 - chr2R_4_7350001 chr2R_7350001 RAL-235 643 chr2R 7434887 7434910 chr2R 7439195 7439231 Juan 6 4316 7.0 6.0 6.5 0.8 4344 chr2R 7434887 intergenic so + chr2R 7437059 intergenic not near genes chr2R 7439231 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-235 644 chr2R 7532124 7532151 chr2R 7532338 7532369 4 210 2.5 2.5 2.5 1.1 245 chr2R 7532124 intron Drat - chr2R 7532246 intron Drat - chr2R 7532369 intron Drat - chr2R_4_7530001 chr2R_7530001 RAL-235 645 chr2R 7608395 7608430 chr2R 7613616 7613633 I-element 8 5219 1.0 1.0 1.0 4.0 5238 chr2R 7608395 intron CG1358 - chr2R 7611014 intron CG1358 - chr2R 7613633 intron CG1358 - chr2R_8_7610001 chr2R_7610001 RAL-235 646 chr2R 7642849 7642890 chr2R 7642949 7642990 13 98 4.0 2.5 3.2 3.1 141 chr2R 7642849 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642990 intron CG43340 + chr2R_13_7640001 chr2R_7640001 RAL-235 647 chr2R 7769719 7769770 chr2R 7769816 7769862 22 93 2.5 3.5 3.0 5.5 143 chr2R 7769719 intron,intron CG30497 -,CG45093 - chr2R 7769790 intron,intron CG30497 -,CG45093 - chr2R 7769862 intron,intron CG30497 -,CG45093 - chr2R_22_7765001 chr2R_7765001 RAL-235 648 chr2R 7815652 7815695 chr2R 7822141 7822148 Burdock 11 6479 4.5 3.5 4.0 2.2 6496 chr2R 7815652 intergenic CG1882 + chr2R 7818900 intergenic not near genes chr2R 7822148 3` UTR cathD - chr2R_11_7815001 chr2R_7815001 RAL-235 649 chr2R 7869179 7869198 chr2R 7873984 7874003 Doc 5 4800 9.0 4.5 6.8 0.6 4824 chr2R 7869179 intron Dgk - chr2R 7871591 intron Dgk - chr2R 7874003 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-235 650 chr2R 7869199 7869215 chr2R 7873978 7874017 Doc 9 4792 6.0 3.5 4.8 1.6 4818 chr2R 7869199 intron Dgk - chr2R 7871608 intron Dgk - chr2R 7874017 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-235 651 chr2R 7916412 7916455 chr2R 7916516 7916549 9 95 4.0 3.0 3.5 2.0 137 chr2R 7916412 5` UTR CG12159 - chr2R 7916480 intergenic CG12159 -,Cul1 + chr2R 7916549 intergenic CG12159 -,Cul1 + chr2R_9_7915001 chr2R_7915001 RAL-235 652 chr2R 7922480 7922520 chr2R 7922592 7922638 10 112 2.5 4.0 3.2 2.4 158 chr2R 7922480 exon Or43b - chr2R 7922559 5` UTR Or43b - chr2R 7922638 intergenic Or43b -,Kdm4A - chr2R_10_7920001 chr2R_7920001 RAL-235 653 chr2R 7942915 7942956 chr2R 7943192 7943203 11 271 2.0 7.5 4.8 1.9 288 chr2R 7942915 intron CG14764 - chr2R 7943059 intron CG14764 - chr2R 7943203 intron CG14764 - chr2R_11_7940001 chr2R_7940001 RAL-235 654 chr2R 7956422 7956453 chr2R 7956521 7956551 7 97 3.0 2.0 2.5 2.0 129 chr2R 7956422 intron CG2906 + chr2R 7956486 intron CG2906 + chr2R 7956551 intron CG2906 + chr2R_7_7955001 chr2R_7955001 RAL-235 655 chr2R 7997430 7997454 chr2R 7997547 7997579 13 124 1.0 6.0 3.5 2.9 149 chr2R 7997430 intron Hey - chr2R 7997504 intron Hey - chr2R 7997579 intron Hey - chr2R_13_7995001 chr2R_7995001 RAL-235 656 chr2R 8015660 8015684 chr2R 8017687 8017706 6 2034 2.5 4.0 3.2 1.4 2046 chr2R 8015660 intergenic mir-4981 + chr2R 8016683 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_6_8015001 chr2R_8015001 RAL-235 657 chr2R 8067043 8067096 chr2R 8067147 8067185 16 100 3.0 7.0 5.0 2.7 142 chr2R 8067043 intron CG17977 - chr2R 8067114 intron CG17977 - chr2R 8067185 exon CG17977 - chr2R_16_8065001 chr2R_8065001 RAL-235 658 chr2R 8076667 8076710 chr2R 8076757 8076810 19 96 7.5 6.0 6.8 2.4 143 chr2R 8076667 intron lig + chr2R 8076738 intron lig + chr2R 8076810 intron lig + chr2R_19_8075001 chr2R_8075001 RAL-235 659 chr2R 8114026 8114061 chr2R 8114123 8114170 10 105 0.0 4.5 2.2 3.1 144 chr2R 8114026 intergenic Asap - chr2R 8114098 intergenic Asap - chr2R 8114170 intergenic Asap - chr2R_10_8110001 chr2R_8110001 RAL-235 660 chr2R 8151588 8151638 chr2R 8151687 8151738 23 90 3.0 2.5 2.8 6.1 150 chr2R 8151588 intron,intron Lpin -,kermit - chr2R 8151663 intron,intron Lpin -,kermit - chr2R 8151738 intron,intron Lpin -,kermit - chr2R_23_8150001 chr2R_8150001 RAL-235 661 chr2R 8153789 8153818 chr2R 8154135 8154162 9 347 3.0 2.0 2.5 2.6 373 chr2R 8153789 intron,intron Lpin -,kermit - chr2R 8153976 intron,intron Lpin -,kermit - chr2R 8154162 intron,intron Lpin -,kermit - chr2R_9_8150001 chr2R_8150001 RAL-235 662 chr2R 8155564 8155609 chr2R 8155670 8155711 10 104 4.0 3.0 3.5 2.2 147 chr2R 8155564 intron,intron Lpin -,kermit - chr2R 8155638 intron,intron Lpin -,kermit - chr2R 8155711 intron,intron Lpin -,kermit - chr2R_10_8155001 chr2R_8155001 RAL-235 663 chr2R 8160917 8160952 chr2R 8161027 8161040 1360 15 104 3.5 6.0 4.8 2.6 123 chr2R 8160917 exon CG8708 - chr2R 8160978 intron CG8708 - chr2R 8161040 intron CG8708 - chr2R_15_8160001 chr2R_8160001 RAL-235 664 chr2R 8166546 8166572 chr2R 8168736 8168756 4 2186 21.5 12.5 17.0 0.2 2210 chr2R 8166546 exon Rs1 + chr2R 8167651 exon Rs1 + chr2R 8168756 exon Gasz + chr2R_4_8165001 chr2R_8165001 RAL-235 665 chr2R 8203738 8203776 chr2R 8203850 8203888 10 110 2.0 1.0 1.5 4.0 150 chr2R 8203738 intron LRP1 + chr2R 8203813 intron LRP1 + chr2R 8203888 intron LRP1 + chr2R_10_8200001 chr2R_8200001 RAL-235 666 chr2R 8236016 8236062 chr2R 8236117 8236159 7 100 3.5 2.5 3.0 1.8 143 chr2R 8236016 intergenic not near genes chr2R 8236088 intergenic not near genes chr2R 8236159 intergenic not near genes chr2R_7_8235001 chr2R_8235001 RAL-235 667 chr2R 8329440 8329462 chr2R 8329544 8329560 5 101 6.5 7.0 6.8 0.6 120 chr2R 8329440 intron pdm3 + chr2R 8329500 intron pdm3 + chr2R 8329560 intron pdm3 + chr2R_5_8325001 chr2R_8325001 RAL-235 668 chr2R 8329465 8329480 chr2R 8329542 8329579 8 88 4.5 6.5 5.5 1.2 114 chr2R 8329465 intron pdm3 + chr2R 8329522 intron pdm3 + chr2R 8329579 intron pdm3 + chr2R_8_8325001 chr2R_8325001 RAL-235 669 chr2R 8330855 8330892 chr2R 8331350 8331387 roo 13 498 4.0 7.5 5.8 1.9 532 chr2R 8330855 intron pdm3 + chr2R 8331121 intron pdm3 + chr2R 8331387 intron pdm3 + chr2R_13_8330001 chr2R_8330001 RAL-235 670 chr2R 8338623 8338668 chr2R 8338725 8338762 7 97 0.0 2.0 1.0 3.5 139 chr2R 8338623 intron pdm3 + chr2R 8338692 intron pdm3 + chr2R 8338762 intron pdm3 + chr2R_7_8335001 chr2R_8335001 RAL-235 671 chr2R 8452015 8452063 chr2R 8452118 8452147 19 97 2.5 3.0 2.8 5.0 132 chr2R 8452015 intergenic Mal-A1 - chr2R 8452081 intergenic Mal-A1 - chr2R 8452147 intergenic Mal-A1 - chr2R_19_8450001 chr2R_8450001 RAL-235 672 chr2R 8489706 8489757 chr2R 8489805 8489856 8 87 3.5 6.5 5.0 1.3 150 chr2R 8489706 intron mtt - chr2R 8489781 intron mtt - chr2R 8489856 intron mtt - chr2R_8_8485001 chr2R_8485001 RAL-235 673 chr2R 8518772 8518800 chr2R 12066250 12066278 4 3547480 19.0 0.0 9.5 0.4 3547506 chr2R 8518772 intron mtt - chr2R 10292525 intron CAP + chr2R 12066278 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-235 674 chr2R 8525086 8525105 chr2R 8525183 8525202 4 96 0.0 5.0 2.5 1.1 116 chr2R 8525086 intron mtt - chr2R 8525144 intron mtt - chr2R 8525202 intron mtt - chr2R_4_8525001 chr2R_8525001 RAL-235 675 chr2R 8554104 8554136 chr2R 8554207 8554234 5 98 2.0 7.0 4.5 0.9 130 chr2R 8554104 intergenic not near genes chr2R 8554169 intergenic not near genes chr2R 8554234 intergenic not near genes chr2R_5_8550001 chr2R_8550001 RAL-235 676 chr2R 8566047 8566061 chr2R 8567008 8567025 1360 9 964 4.5 6.0 5.2 1.5 978 chr2R 8566047 5` UTR Cyp6a14 - chr2R 8566536 5` UTR Cyp6a14 - chr2R 8567025 5` UTR Cyp6a14 - chr2R_9_8565001 chr2R_8565001 RAL-235 677 chr2R 8612562 8612604 chr2R 8612659 8612701 11 96 6.0 6.0 6.0 1.6 139 chr2R 8612562 intron CG8642 - chr2R 8612632 intron CG8642 - chr2R 8612701 intron CG8642 - chr2R_11_8610001 chr2R_8610001 RAL-235 678 chr2R 8722756 8722793 chr2R 8723003 8723046 pogo 7 246 3.5 4.5 4.0 1.4 290 chr2R 8722756 intron CG14767 - chr2R 8722901 intron CG14767 - chr2R 8723046 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-235 679 chr2R 8774878 8774909 chr2R 8774977 8774977 7 93 5.5 5.5 5.5 1.1 99 chr2R 8774878 intergenic not near genes chr2R 8774928 intergenic not near genes chr2R 8774977 intergenic not near genes chr2R_7_8770001 chr2R_8770001 RAL-235 680 chr2R 8907222 8907258 chr2R 8907491 8907512 16 268 4.0 3.5 3.8 3.3 290 chr2R 8907222 intergenic CG8258 -,CG30349 + chr2R 8907367 intergenic CG30349 +,CG8258 - chr2R 8907512 intergenic CG30349 + chr2R_16_8905001 chr2R_8905001 RAL-235 681 chr2R 9030012 9030048 chr2R 9030706 9030742 9 692 3.0 1.5 2.2 2.8 730 chr2R 9030012 intron CG8170 - chr2R 9030377 intron CG8170 - chr2R 9030742 intron CG8170 - chr2R_9_9030001 chr2R_9030001 RAL-235 682 chr2R 9076128 9076161 chr2R 9076214 9076257 12 93 4.0 2.5 3.2 2.9 129 chr2R 9076128 intron ana + chr2R 9076192 intron ana + chr2R 9076257 intron ana + chr2R_12_9075001 chr2R_9075001 RAL-235 683 chr2R 9078465 9078512 chr2R 9078558 9078604 10 94 3.0 3.5 3.2 2.4 139 chr2R 9078465 intergenic CG8083 + chr2R 9078534 intergenic CG8083 + chr2R 9078604 intergenic CG8083 + chr2R_10_9075001 chr2R_9075001 RAL-235 684 chr2R 9151283 9151324 chr2R 9157773 9157814 Burdock 11 6485 7.0 3.0 5.0 1.8 6531 chr2R 9151283 exon CG30345 + chr2R 9154548 intergenic not near genes chr2R 9157814 intergenic CG8008 - chr2R_11_9150001 chr2R_9150001 RAL-235 685 chr2R 9212677 9212725 chr2R 9213182 9213182 roo 7 492 3.0 5.5 4.2 1.3 505 chr2R 9212677 intergenic CR45309 + chr2R 9212930 intergenic CR45309 + chr2R 9213182 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-235 686 chr2R 9267958 9268007 chr2R 9268064 9268113 10 104 3.5 3.5 3.5 2.2 155 chr2R 9267958 exon Pkn - chr2R 9268036 intron Pkn - chr2R 9268113 intron Pkn - chr2R_10_9265001 chr2R_9265001 RAL-235 687 chr2R 9271024 9271040 chr2R 9271121 9271137 4 96 6.5 4.0 5.2 0.6 113 chr2R 9271024 intron Pkn - chr2R 9271080 intron Pkn - chr2R 9271137 intron Pkn - chr2R_4_9270001 chr2R_9270001 RAL-235 688 chr2R 9368133 9368151 chr2R 9368201 9368238 5 83 1.5 1.0 1.2 2.3 105 chr2R 9368133 intron CG13954 - chr2R 9368186 intron CG13954 - chr2R 9368238 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-235 689 chr2R 9480078 9480105 chr2R 9490611 9490656 roo 19 10547 6.5 7.5 7.0 2.4 10578 chr2R 9480078 intergenic not near genes chr2R 9485367 intergenic not near genes chr2R 9490656 intergenic not near genes chr2R_19_9485001 chr2R_9485001 RAL-235 690 chr2R 9561806 9561849 chr2R 9561913 9561957 11 105 0.5 0.5 0.5 7.3 151 chr2R 9561806 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561957 3` UTR,intron CR45281 -,CG1809 + chr2R_11_9560001 chr2R_9560001 RAL-235 691 chr2R 9651029 9651067 chr2R 9651113 9651162 13 88 3.5 2.5 3.0 3.2 133 chr2R 9651029 intron Mmp2 - chr2R 9651096 intron Mmp2 - chr2R 9651162 intron Mmp2 - chr2R_13_9650001 chr2R_9650001 RAL-235 692 chr2R 9726603 9726643 chr2R 9734168 9734214 17.6 11 7569 4.0 6.5 5.2 1.8 7611 chr2R 9726603 intron sqa - chr2R 9730408 intron sqa - chr2R 9734214 intron sqa - chr2R_11_9730001 chr2R_9730001 RAL-235 693 chr2R 9871022 9871068 chr2R 9871528 9871551 roo 8 499 6.5 3.0 4.8 1.4 529 chr2R 9871022 intron cbx - chr2R 9871286 intron cbx - chr2R 9871551 intron,5` UTR cbx -,CG18446 + chr2R_8_9870001 chr2R_9870001 RAL-235 694 chr2R 9945455 9945467 chr2R 9945627 9945678 BS 6 204 2.0 4.5 3.2 1.4 223 chr2R 9945455 intron Mef2 - chr2R 9945566 intron Mef2 - chr2R 9945678 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-235 695 chr2R 9946804 9946851 chr2R 9946909 9946956 9 99 4.0 1.5 2.8 2.4 152 chr2R 9946804 intron Mef2 - chr2R 9946880 intron Mef2 - chr2R 9946956 intron Mef2 - chr2R_9_9945001 chr2R_9945001 RAL-235 696 chr2R 9998051 9998087 chr2R 9998165 9998201 4 110 5.0 3.0 4.0 0.8 150 chr2R 9998051 intron Pka-R2 - chr2R 9998126 intron Pka-R2 - chr2R 9998201 intron Pka-R2 - chr2R_4_9995001 chr2R_9995001 RAL-235 697 chr2R 10005538 10005585 chr2R 10005655 10005697 15 114 6.0 3.5 4.8 2.6 159 chr2R 10005538 intron Pka-R2 - chr2R 10005618 intron Pka-R2 - chr2R 10005697 intron Pka-R2 - chr2R_15_10005001 chr2R_10005001 RAL-235 698 chr2R 10005857 10005880 chr2R 10007018 10007054 1360 4 1168 3.5 1.5 2.5 1.1 1197 chr2R 10005857 intron Pka-R2 - chr2R 10006456 intron Pka-R2 - chr2R 10007054 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-235 699 chr2R 10047823 10047836 chr2R 10047910 10047934 5 98 7.5 9.0 8.2 0.5 111 chr2R 10047823 intron oys - chr2R 10047878 intron oys - chr2R 10047934 intron oys - chr2R_5_10045001 chr2R_10045001 RAL-235 700 chr2R 10059263 10059292 chr2R 10059672 10059683 4 400 4.5 4.0 4.2 0.8 420 chr2R 10059263 intron magu + chr2R 10059473 intron magu + chr2R 10059683 intron magu + chr2R_4_10055001 chr2R_10055001 RAL-235 701 chr2R 10086900 10086934 chr2R 10087017 10087049 8 113 2.0 6.5 4.2 1.5 149 chr2R 10086900 intron,exon CG2269 +,sut4 - chr2R 10086974 intron,5` UTR CG2269 +,sut4 - chr2R 10087049 intron,5` UTR CG2269 +,sut4 - chr2R_8_10085001 chr2R_10085001 RAL-235 702 chr2R 10107167 10107202 chr2R 10107274 10107309 18 103 4.5 4.0 4.2 3.5 142 chr2R 10107167 intron 14-3-3zeta + chr2R 10107238 intron 14-3-3zeta + chr2R 10107309 intron 14-3-3zeta + chr2R_18_10105001 chr2R_10105001 RAL-235 703 chr2R 10122721 10122749 chr2R 10122950 10122979 9 227 8.5 3.5 6.0 1.3 258 chr2R 10122721 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122979 intergenic Ccs - chr2R_9_10120001 chr2R_10120001 RAL-235 704 chr2R 10132169 10132209 chr2R 10132269 10132309 10 100 3.5 3.0 3.2 2.4 140 chr2R 10132169 intron gem + chr2R 10132239 intron gem + chr2R 10132309 exon gem + chr2R_10_10130001 chr2R_10130001 RAL-235 705 chr2R 10172626 10172656 chr2R 10172748 10172753 12 118 4.0 0.0 2.0 4.0 127 chr2R 10172626 intron KCNQ - chr2R 10172690 intron KCNQ - chr2R 10172753 intron KCNQ - chr2R_12_10170001 chr2R_10170001 RAL-235 706 chr2R 10176885 10176912 chr2R 10186072 10186081 roo 9 9184 3.0 7.5 5.2 1.5 9196 chr2R 10176885 intron KCNQ - chr2R 10181483 intron KCNQ - chr2R 10186081 intron KCNQ - chr2R_9_10180001 chr2R_10180001 RAL-235 707 chr2R 10186330 10186355 chr2R 10186412 10186457 5 91 1.0 2.5 1.8 1.8 127 chr2R 10186330 intron KCNQ - chr2R 10186394 intron KCNQ - chr2R 10186457 intron KCNQ - chr2R_5_10185001 chr2R_10185001 RAL-235 708 chr2R 10189191 10189232 chr2R 10189283 10189330 16 94 6.0 6.0 6.0 2.3 139 chr2R 10189191 intron KCNQ - chr2R 10189260 intron KCNQ - chr2R 10189330 intron KCNQ - chr2R_16_10185001 chr2R_10185001 RAL-235 709 chr2R 10234965 10234992 chr2R 10235074 10235080 5 105 2.5 0.0 1.2 2.3 115 chr2R 10234965 intron Hr46 - chr2R 10235022 intron Hr46 - chr2R 10235080 intron Hr46 - chr2R_5_10235001 chr2R_10235001 RAL-235 710 chr2R 10313302 10313345 chr2R 10313410 10313448 14 103 2.5 8.5 5.5 2.2 146 chr2R 10313302 intergenic not near genes chr2R 10313375 intergenic not near genes chr2R 10313448 intergenic Ndg + chr2R_14_10310001 chr2R_10310001 RAL-235 711 chr2R 10319722 10319740 chr2R 10319834 10319852 4 111 4.5 3.0 3.8 0.8 130 chr2R 10319722 intron Ndg + chr2R 10319787 intron Ndg + chr2R 10319852 intron,3` UTR Ndg +,CG34222 - chr2R_4_10315001 chr2R_10315001 RAL-235 712 chr2R 10322066 10322077 chr2R 10322168 10322172 5 100 3.0 3.0 3.0 1.2 106 chr2R 10322066 3` UTR Ndg + chr2R 10322119 intergenic Ndg + chr2R 10322172 intergenic Ndg + chr2R_5_10320001 chr2R_10320001 RAL-235 713 chr2R 10352672 10352682 chr2R 10352764 10352773 4 93 4.5 4.0 4.2 0.8 101 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352722 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352773 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-235 714 chr2R 10417415 10417442 chr2R 10417533 10417558 8 112 35.5 32.0 33.8 0.2 143 chr2R 10417415 intergenic CG42732 - chr2R 10417486 intergenic CG42732 - chr2R 10417558 intergenic not near genes chr2R_8_10415001 chr2R_10415001 RAL-235 715 chr2R 10551043 10551178 chr2R 10551149 10551317 5 126 0.0 0.5 0.2 4.2 274 chr2R 10551043 intergenic not near genes chr2R 10551180 intergenic not near genes chr2R 10551317 intergenic not near genes chr2R_5_10550001 chr2R_10550001 RAL-235 716 chr2R 10563902 10563925 chr2R 10564116 10564139 8 212 0.0 3.0 1.5 3.2 237 chr2R 10563902 intron psq + chr2R 10564020 intron psq + chr2R 10564139 intron psq + chr2R_8_10560001 chr2R_10560001 RAL-235 717 chr2R 10574625 10574638 chr2R 10574727 10574740 6 100 5.0 10.5 7.8 0.7 115 chr2R 10574625 intron psq + chr2R 10574682 intron psq + chr2R 10574740 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-235 718 chr2R 10585583 10585590 chr2R 10594165 10594168 Tirant 4 8588 0.0 4.0 2.0 1.3 8585 chr2R 10585583 intron psq + chr2R 10589876 intron psq + chr2R 10594168 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-235 719 chr2R 10622336 10622368 chr2R 10637120 10637146 mdg1 7 14781 8.0 3.5 5.8 1.0 14810 chr2R 10622336 intron CG11883 + chr2R 10629741 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_7_10625001 chr2R_10625001 RAL-235 720 chr2R 10644038 10644091 chr2R 10644136 10644189 21 96 4.0 1.0 2.5 6.0 151 chr2R 10644038 intron Git - chr2R 10644114 intron Git - chr2R 10644189 intron Git - chr2R_21_10640001 chr2R_10640001 RAL-235 721 chr2R 10823561 10823590 chr2R 10828582 10828612 11 5010 30.0 41.0 35.5 0.3 5051 chr2R 10823561 5` UTR CG12325 + chr2R 10826086 exon CG12325 + chr2R 10828612 3` UTR CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-235 722 chr2R 10832667 10832696 chr2R 10832747 10832770 5 81 6.0 0.0 3.0 1.2 103 chr2R 10832667 intron CG12344 - chr2R 10832718 intron CG12344 - chr2R 10832770 intron CG12344 - chr2R_5_10830001 chr2R_10830001 RAL-235 723 chr2R 10848312 10848320 chr2R 10848433 10848441 4 121 0.0 2.5 1.2 1.8 129 chr2R 10848312 intron CG30015 - chr2R 10848376 intron CG30015 - chr2R 10848441 intron CG30015 - chr2R_4_10845001 chr2R_10845001 RAL-235 724 chr2R 10873328 10873340 chr2R 10873435 10873439 4 105 12.5 3.5 8.0 0.4 111 chr2R 10873328 intron CG30015 - chr2R 10873384 intron CG30015 - chr2R 10873439 intron CG30015 - chr2R_4_10870001 chr2R_10870001 RAL-235 725 chr2R 10873341 10873377 chr2R 10873434 10873484 12 103 5.5 3.5 4.5 2.2 143 chr2R 10873341 intron CG30015 - chr2R 10873412 intron CG30015 - chr2R 10873484 intron CG30015 - chr2R_12_10870001 chr2R_10870001 RAL-235 726 chr2R 10947077 10947126 chr2R 10947184 10947223 4 104 4.0 0.0 2.0 1.3 146 chr2R 10947077 5` UTR CR45228 + chr2R 10947150 intergenic CR45228 + chr2R 10947223 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-235 727 chr2R 10948039 10948056 chr2R 10955590 10955594 17.6 5 7552 1.5 3.5 2.5 1.4 7555 chr2R 10948039 intergenic not near genes chr2R 10951816 intergenic not near genes chr2R 10955594 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-235 728 chr2R 10959070 10959107 chr2R 10959169 10959206 12 95 4.5 2.5 3.5 2.7 136 chr2R 10959070 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959206 intergenic not near genes chr2R_12_10955001 chr2R_10955001 RAL-235 729 chr2R 10979659 10979680 chr2R 10980127 10980168 297 4 480 0.5 3.0 1.8 1.4 509 chr2R 10979659 intergenic not near genes chr2R 10979914 intergenic not near genes chr2R 10980168 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-235 730 chr2R 10992926 10992975 chr2R 10993032 10993073 11 100 4.5 3.5 4.0 2.2 147 chr2R 10992926 intron luna - chr2R 10993000 intron luna - chr2R 10993073 intron luna - chr2R_11_10990001 chr2R_10990001 RAL-235 731 chr2R 11009807 11009842 chr2R 11018996 11019025 roo 5 9181 4.5 3.0 3.8 1.0 9218 chr2R 11009807 intron luna - chr2R 11014416 intron luna - chr2R 11019025 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-235 732 chr2R 11019871 11019908 chr2R 11024950 11024976 jockey 5 5076 1.0 2.0 1.5 2.0 5105 chr2R 11019871 intron luna - chr2R 11022424 intron luna - chr2R 11024976 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-235 733 chr2R 11050490 11050527 chr2R 11050571 11050623 10 88 2.0 4.0 3.0 2.5 133 chr2R 11050490 intron luna - chr2R 11050556 intron luna - chr2R 11050623 intron luna - chr2R_10_11050001 chr2R_11050001 RAL-235 734 chr2R 11064695 11064702 chr2R 11064798 11064805 6 102 9.0 5.0 7.0 0.8 110 chr2R 11064695 intron luna - chr2R 11064750 intron luna - chr2R 11064805 intron luna - chr2R_6_11060001 chr2R_11060001 RAL-235 735 chr2R 11064707 11064723 chr2R 11064795 11064826 6 100 8.0 5.0 6.5 0.8 119 chr2R 11064707 intron luna - chr2R 11064766 intron luna - chr2R 11064826 intron luna - chr2R_6_11060001 chr2R_11060001 RAL-235 736 chr2R 11071539 11071591 chr2R 11071663 11071701 16 119 1.5 0.5 1.0 8.0 162 chr2R 11071539 intron luna - chr2R 11071620 intron luna - chr2R 11071701 intron luna - chr2R_16_11070001 chr2R_11070001 RAL-235 737 chr2R 11118168 11118181 chr2R 11118255 11118278 6 95 0.0 4.5 2.2 1.9 110 chr2R 11118168 3` UTR Cyp12d1-p - chr2R 11118223 3` UTR Cyp12d1-p - chr2R 11118278 3` UTR Cyp12d1-p - chr2R_6_11115001 chr2R_11115001 RAL-235 738 chr2R 11158847 11158894 chr2R 11159036 11159083 11 189 4.0 3.5 3.8 2.3 236 chr2R 11158847 intron CG13229 - chr2R 11158965 intron CG13229 - chr2R 11159083 intron CG13229 - chr2R_11_11155001 chr2R_11155001 RAL-235 739 chr2R 11179264 11179282 chr2R 11179365 11179388 7 103 0.0 6.0 3.0 1.8 124 chr2R 11179264 intron shn + chr2R 11179326 intron shn + chr2R 11179388 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-235 740 chr2R 11207800 11207845 chr2R 11208009 11208043 BS 9 203 6.5 11.0 8.8 0.9 243 chr2R 11207800 intron shn + chr2R 11207922 intron shn + chr2R 11208043 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-235 741 chr2R 11276787 11276818 chr2R 11276975 11276985 6 180 3.5 2.5 3.0 1.5 198 chr2R 11276787 intergenic not near genes chr2R 11276886 intergenic not near genes chr2R 11276985 intergenic not near genes chr2R_6_11275001 chr2R_11275001 RAL-235 742 chr2R 11368029 11368056 chr2R 11368104 11368152 5 92 5.0 4.0 4.5 0.9 123 chr2R 11368029 intron CG13204 + chr2R 11368090 intron CG13204 + chr2R 11368152 intron CG13204 + chr2R_5_11365001 chr2R_11365001 RAL-235 743 chr2R 11415503 11415551 chr2R 11418672 11418719 opus 12 3160 2.5 10.0 6.2 1.7 3216 chr2R 11415503 intron Drip - chr2R 11417111 intron Drip - chr2R 11418719 intron Drip - chr2R_12_11415001 chr2R_11415001 RAL-235 744 chr2R 11472638 11472648 chr2R 11473855 11473860 pogo 5 1216 9.0 6.5 7.8 0.6 1222 chr2R 11472638 intergenic not near genes chr2R 11473249 intergenic not near genes chr2R 11473860 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-235 745 chr2R 11472657 11472678 chr2R 11473848 11473860 pogo 7 1203 3.5 5.5 4.5 1.3 1203 chr2R 11472657 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473860 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-235 746 chr2R 11480780 11480833 chr2R 11480892 11480911 7 105 0.0 2.0 1.0 3.5 131 chr2R 11480780 intron inv + chr2R 11480846 intron inv + chr2R 11480911 intron inv + chr2R_7_11480001 chr2R_11480001 RAL-235 747 chr2R 11494576 11494628 chr2R 11494685 11494704 10 100 4.5 2.0 3.2 2.4 128 chr2R 11494576 intron inv + chr2R 11494640 intron inv + chr2R 11494704 intron inv + chr2R_10_11490001 chr2R_11490001 RAL-235 748 chr2R 11568684 11568731 chr2R 11568814 11568855 5 128 2.0 5.5 3.8 1.0 171 chr2R 11568684 intergenic not near genes chr2R 11568770 intergenic not near genes chr2R 11568855 intergenic not near genes chr2R_5_11565001 chr2R_11565001 RAL-235 749 chr2R 11631377 11631410 chr2R 11631477 11631509 13 99 0.5 5.5 3.0 3.2 132 chr2R 11631377 intron CG9005 - chr2R 11631443 intron CG9005 - chr2R 11631509 intron CG9005 - chr2R_13_11630001 chr2R_11630001 RAL-235 750 chr2R 11677866 11677896 chr2R 11677956 11677978 5 92 5.0 5.5 5.2 0.8 112 chr2R 11677866 intron,exon Roc2 -,Tret1-2 + chr2R 11677922 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677978 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-235 751 chr2R 12103283 12103296 chr2R 12103533 12103549 4 257 2.0 2.0 2.0 1.3 266 chr2R 12103283 intron jeb - chr2R 12103416 intron jeb - chr2R 12103549 intron jeb - chr2R_4_12100001 chr2R_12100001 RAL-235 752 chr2R 12185983 12186037 chr2R 12186098 12186130 49 108 16.0 23.0 19.5 2.4 147 chr2R 12185983 intron Cyp6g1 + chr2R 12186056 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_49_12185001 chr2R_12185001 RAL-235 753 chr2R 12185222 12185237 chr2R 12188127 12188142 9 2905 41.0 141.5 91.2 0.1 2920 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186682 exon Cyp6g1 + chr2R 12188142 3` UTR Cyp6g1 + chr2R_9_12185001 chr2R_12185001 RAL-235 754 chr2R 12187471 12187493 chr2R 12190086 12190124 22 2614 57.5 48.5 53.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_22_12185001 chr2R_12185001 RAL-235 755 chr2R 12217566 12217600 chr2R 12217661 12217678 13 95 3.0 3.5 3.2 3.1 112 chr2R 12217566 intergenic not near genes chr2R 12217622 intergenic not near genes chr2R 12217678 intergenic not near genes chr2R_13_12215001 chr2R_12215001 RAL-235 756 chr2R 12228359 12228405 chr2R 12228491 12228514 12 135 1.0 1.5 1.2 5.5 155 chr2R 12228359 intron CG8854 - chr2R 12228436 intron CG8854 - chr2R 12228514 intron CG8854 - chr2R_12_12225001 chr2R_12225001 RAL-235 757 chr2R 12232639 12232652 chr2R 12232727 12232738 5 90 5.5 0.0 2.8 1.3 99 chr2R 12232639 intergenic not near genes chr2R 12232688 intergenic not near genes chr2R 12232738 intergenic not near genes chr2R_5_12230001 chr2R_12230001 RAL-235 758 chr2R 12284294 12284324 chr2R 12284398 12284428 4 97 0.0 5.5 2.8 1.1 134 chr2R 12284294 intron CG42700 + chr2R 12284361 intron CG42700 + chr2R 12284428 intron CG42700 + chr2R_4_12280001 chr2R_12280001 RAL-235 759 chr2R 12320706 12320716 chr2R 12320986 12320996 5 280 3.5 3.5 3.5 1.1 290 chr2R 12320706 3` UTR CR44316 - chr2R 12320851 intron CR44316 - chr2R 12320996 intergenic CR44316 -,CG13163 + chr2R_5_12320001 chr2R_12320001 RAL-235 760 chr2R 12334867 12334881 chr2R 12334965 12334979 5 96 7.5 1.5 4.5 0.9 112 chr2R 12334867 intergenic CG8490 + chr2R 12334923 intergenic CG8490 + chr2R 12334979 intergenic CG8490 + chr2R_5_12330001 chr2R_12330001 RAL-235 761 chr2R 12363365 12363414 chr2R 12363817 12363855 13 447 6.5 3.5 5.0 2.2 490 chr2R 12363365 intergenic CG30043 + chr2R 12363610 intergenic CG30043 + chr2R 12363855 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-235 762 chr2R 12501674 12501727 chr2R 12503850 12503891 Rt1c 4 2168 1.0 2.5 1.8 1.4 2217 chr2R 12501674 intron fdl - chr2R 12502782 intron fdl - chr2R 12503891 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-235 763 chr2R 12565545 12565590 chr2R 12565943 12565959 7 385 0.0 3.5 1.8 2.5 414 chr2R 12565545 intergenic not near genes chr2R 12565752 intergenic Cyp301a1 + chr2R 12565959 intergenic Cyp301a1 + chr2R_7_12565001 chr2R_12565001 RAL-235 764 chr2R 12625511 12625537 chr2R 12625595 12625632 12 92 3.0 0.5 1.8 4.3 121 chr2R 12625511 intergenic CG30054 +,CG17760 + chr2R 12625572 intergenic CG30054 +,CG17760 + chr2R 12625632 intergenic CG17760 +,CG30054 + chr2R_12_12625001 chr2R_12625001 RAL-235 765 chr2R 12670366 12670368 chr2R 12670493 12670495 4 127 7.5 0.0 3.8 0.8 129 chr2R 12670366 intergenic CG42708 -,nemy - chr2R 12670430 intergenic CG42708 -,nemy - chr2R 12670495 3` UTR CG42708 - chr2R_4_12670001 chr2R_12670001 RAL-235 766 chr2R 12670375 12670396 chr2R 12670486 12670507 10 121 4.5 0.0 2.2 3.1 132 chr2R 12670375 intergenic CG42708 -,nemy - chr2R 12670441 intergenic CG42708 -,nemy - chr2R 12670507 3` UTR CG42708 - chr2R_10_12670001 chr2R_12670001 RAL-235 767 chr2R 12707521 12707549 chr2R 12715902 12715929 roo 13 8384 3.0 5.0 4.0 2.6 8408 chr2R 12707521 intron CG42663 + chr2R 12711725 intron CG42663 + chr2R 12715929 intron CG42663 + chr2R_13_12710001 chr2R_12710001 RAL-235 768 chr2R 12728820 12728857 chr2R 12728978 12729025 6 160 0.0 0.0 0.0 6.0 205 chr2R 12728820 intron CG42663 + chr2R 12728922 intron CG42663 + chr2R 12729025 intron CG42663 + chr2R_6_12725001 chr2R_12725001 RAL-235 769 chr2R 12819451 12819468 chr2R 12824534 12824537 jockey 4 5077 2.5 5.5 4.0 0.8 5086 chr2R 12819451 intergenic not near genes chr2R 12821994 intergenic not near genes chr2R 12824537 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-235 770 chr2R 12897470 12897480 chr2R 12897567 12897591 6 105 2.0 0.0 1.0 3.0 121 chr2R 12897470 intron vg + chr2R 12897530 intron vg + chr2R 12897591 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-235 771 chr2R 12952836 12952841 chr2R 12952929 12952945 7 102 0.0 2.0 1.0 3.5 109 chr2R 12952836 intergenic CG13321 + chr2R 12952890 intergenic CG13321 + chr2R 12952945 intergenic CG13321 + chr2R_7_12950001 chr2R_12950001 RAL-235 772 chr2R 13027689 13027742 chr2R 13027788 13027840 8 93 4.0 0.0 2.0 2.7 151 chr2R 13027689 intergenic not near genes chr2R 13027764 intergenic not near genes chr2R 13027840 intergenic not near genes chr2R_8_13025001 chr2R_13025001 RAL-235 773 chr2R 13043033 13043063 chr2R 13043133 13043162 8 99 0.0 4.5 2.2 2.5 129 chr2R 13043033 intergenic not near genes chr2R 13043098 intergenic not near genes chr2R 13043162 intergenic not near genes chr2R_8_13040001 chr2R_13040001 RAL-235 774 chr2R 13136831 13136863 chr2R 13141649 13141675 Doc 4 4816 2.5 1.5 2.0 1.3 4844 chr2R 13136831 exon Cap-G + chr2R 13139253 intron Cap-G + chr2R 13141675 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-235 775 chr2R 13162762 13162781 chr2R 13162862 13162875 6 98 9.0 0.0 4.5 1.1 113 chr2R 13162762 3` UTR Nrk + chr2R 13162818 3` UTR Nrk + chr2R 13162875 3` UTR Nrk + chr2R_6_13160001 chr2R_13160001 RAL-235 776 chr2R 13170697 13170750 chr2R 13170806 13170854 12 107 4.0 5.5 4.8 2.1 157 chr2R 13170697 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170776 intergenic CR45142 -,Spt-I + chr2R 13170854 intergenic CR45142 -,Spt-I + chr2R_12_13170001 chr2R_13170001 RAL-235 777 chr2R 13175167 13175192 chr2R 13175283 13175316 10 117 25.5 35.0 30.2 0.3 149 chr2R 13175167 intergenic CG33137 +,AGBE + chr2R 13175242 intergenic CG33137 +,AGBE + chr2R 13175316 intergenic CG33137 + chr2R_10_13175001 chr2R_13175001 RAL-235 778 chr2R 13309649 13309680 chr2R 13309787 13309809 6 136 2.5 4.0 3.2 1.4 160 chr2R 13309649 intergenic not near genes chr2R 13309729 intergenic not near genes chr2R 13309809 intergenic not near genes chr2R_6_13305001 chr2R_13305001 RAL-235 779 chr2R 13364700 13364730 chr2R 13364795 13364836 13 102 2.5 2.5 2.5 3.7 136 chr2R 13364700 intergenic not near genes chr2R 13364768 intergenic not near genes chr2R 13364836 intergenic not near genes chr2R_13_13360001 chr2R_13360001 RAL-235 780 chr2R 13368739 13368789 chr2R 13368870 13368910 7 129 1.5 0.0 0.8 3.9 171 chr2R 13368739 intergenic not near genes chr2R 13368824 intergenic not near genes chr2R 13368910 intergenic not near genes chr2R_7_13365001 chr2R_13365001 RAL-235 781 chr2R 13369632 13369760 chr2R 13369748 13369856 6 102 0.0 0.0 0.0 6.0 224 chr2R 13369632 intergenic not near genes chr2R 13369744 intergenic not near genes chr2R 13369856 intergenic not near genes chr2R_6_13365001 chr2R_13365001 RAL-235 782 chr2R 13431478 13431517 chr2R 13431567 13431616 18 96 8.0 2.5 5.2 2.9 138 chr2R 13431478 intron CG42321 - chr2R 13431547 intron CG42321 - chr2R 13431616 intron CG42321 - chr2R_18_13430001 chr2R_13430001 RAL-235 783 chr2R 13438862 13438863 chr2R 13440172 13440191 8 1307 17.0 31.5 24.2 0.3 1329 chr2R 13438862 5` UTR CG42321 - chr2R 13439526 3` UTR cnn - chr2R 13440191 exon cnn - chr2R_8_13435001 chr2R_13435001 RAL-235 784 chr2R 13464455 13464493 chr2R 13464606 13464644 14 145 5.0 7.5 6.2 1.9 189 chr2R 13464455 intron arr - chr2R 13464550 intron arr - chr2R 13464644 intron arr - chr2R_14_13460001 chr2R_13460001 RAL-235 785 chr2R 13532502 13532527 chr2R 13532638 13532663 10 136 5.5 5.5 5.5 1.5 161 chr2R 13532502 intron Vmat - chr2R 13532582 intron Vmat - chr2R 13532663 intron Vmat - chr2R_10_13530001 chr2R_13530001 RAL-235 786 chr2R 13540182 13540199 chr2R 13540284 13540301 5 100 4.0 0.0 2.0 1.7 119 chr2R 13540182 intron CG6145 - chr2R 13540242 intron CG6145 - chr2R 13540301 intron CG6145 - chr2R_5_13540001 chr2R_13540001 RAL-235 787 chr2R 13554757 13554772 chr2R 13554854 13554877 5 103 0.0 11.0 5.5 0.8 120 chr2R 13554757 intron Roe1 + chr2R 13554817 intron Roe1 + chr2R 13554877 intron Roe1 + chr2R_5_13550001 chr2R_13550001 RAL-235 788 chr2R 13574395 13574426 chr2R 13574495 13574525 8 99 2.0 7.5 4.8 1.4 130 chr2R 13574395 intergenic CG42808 - chr2R 13574460 intergenic CG42808 -,CR44365 + chr2R 13574525 intergenic CG42808 -,CR44365 + chr2R_8_13570001 chr2R_13570001 RAL-235 789 chr2R 13580483 13580533 chr2R 13580848 13580873 jockey 15 360 2.5 1.5 2.0 5.0 390 chr2R 13580483 3` UTR CG6191 - chr2R 13580678 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580873 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_15_13580001 chr2R_13580001 RAL-235 790 chr2R 13631071 13631090 chr2R 13631168 13631212 4 111 3.0 1.0 2.0 1.3 141 chr2R 13631071 intron fas + chr2R 13631142 intron fas + chr2R 13631212 intron fas + chr2R_4_13630001 chr2R_13630001 RAL-235 791 chr2R 13652689 13652737 chr2R 13652788 13652833 9 93 4.5 3.0 3.8 1.9 144 chr2R 13652689 intron fas + chr2R 13652761 intron fas + chr2R 13652833 intron fas + chr2R_9_13650001 chr2R_13650001 RAL-235 792 chr2R 13700520 13700535 chr2R 13700590 13700632 4 88 1.5 6.0 3.8 0.8 112 chr2R 13700520 intron fas + chr2R 13700576 intron fas + chr2R 13700632 intron fas + chr2R_4_13700001 chr2R_13700001 RAL-235 793 chr2R 13702143 13702168 chr2R 13702242 13702257 4 93 9.0 3.5 6.2 0.6 114 chr2R 13702143 intron fas + chr2R 13702200 intron fas + chr2R 13702257 intron fas + chr2R_4_13700001 chr2R_13700001 RAL-235 794 chr2R 13715365 13715405 chr2R 13715660 13715692 16 289 3.5 5.5 4.5 2.9 327 chr2R 13715365 intron fas + chr2R 13715528 intron fas + chr2R 13715692 intron fas + chr2R_16_13715001 chr2R_13715001 RAL-235 795 chr2R 13728119 13728166 chr2R 13735791 13735843 opus 6 7676 2.5 0.0 1.2 2.7 7724 chr2R 13728119 intron fas + chr2R 13731981 intron fas + chr2R 13735843 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-235 796 chr2R 13741341 13741360 chr2R 13741433 13741454 5 95 5.5 6.5 6.0 0.7 113 chr2R 13741341 intron fas + chr2R 13741398 intron fas + chr2R 13741454 intron fas + chr2R_5_13740001 chr2R_13740001 RAL-235 797 chr2R 13768996 13769010 chr2R 13769079 13769129 4 97 2.0 4.5 3.2 1.0 133 chr2R 13768996 intergenic not near genes chr2R 13769062 intergenic not near genes chr2R 13769129 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-235 798 chr2R 13823015 13823064 chr2R 13823109 13823155 17 97 6.0 6.5 6.2 2.4 140 chr2R 13823015 intron fl(2)d - chr2R 13823085 intron fl(2)d - chr2R 13823155 intron fl(2)d - chr2R_17_13820001 chr2R_13820001 RAL-235 799 chr2R 13888743 13888768 chr2R 13888839 13888857 4 94 6.5 0.0 3.2 1.0 114 chr2R 13888743 intron shot - chr2R 13888800 intron shot - chr2R 13888857 intron shot - chr2R_4_13885001 chr2R_13885001 RAL-235 800 chr2R 13888771 13888790 chr2R 13888838 13888843 5 78 4.0 0.5 2.2 1.6 72 chr2R 13888771 intron shot - chr2R 13888807 intron shot - chr2R 13888843 intron shot - chr2R_5_13885001 chr2R_13885001 RAL-235 801 chr2R 13905584 13905625 chr2R 13907586 13907617 Rt1a 6 1998 6.0 1.5 3.8 1.2 2033 chr2R 13905584 intron shot - chr2R 13906600 intron shot - chr2R 13907617 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-235 802 chr2R 13965728 13965775 chr2R 13966166 13966214 4 438 3.0 3.5 3.2 1.0 486 chr2R 13965728 intron Cp1 + chr2R 13965971 intron Cp1 + chr2R 13966214 intron Cp1 + chr2R_4_13965001 chr2R_13965001 RAL-235 803 chr2R 14014950 14014998 chr2R 14015764 14015781 11 809 4.5 3.0 3.8 2.3 831 chr2R 14014950 intron mam + chr2R 14015366 intron mam + chr2R 14015781 intron mam + chr2R_11_14015001 chr2R_14015001 RAL-235 804 chr2R 14141935 14141953 chr2R 14142060 14142078 11 124 11.5 10.5 11.0 0.9 143 chr2R 14141935 intergenic not near genes chr2R 14142006 intergenic not near genes chr2R 14142078 intergenic not near genes chr2R_11_14140001 chr2R_14140001 RAL-235 805 chr2R 14142433 14142474 chr2R 14142538 14142584 10 105 4.0 5.0 4.5 1.8 151 chr2R 14142433 intergenic not near genes chr2R 14142508 intergenic not near genes chr2R 14142584 intergenic not near genes chr2R_10_14140001 chr2R_14140001 RAL-235 806 chr2R 14277567 14277573 chr2R 14277667 14277675 6 100 12.0 6.0 9.0 0.6 108 chr2R 14277567 5` UTR Ih + chr2R 14277621 5` UTR Ih + chr2R 14277675 5` UTR Ih + chr2R_6_14275001 chr2R_14275001 RAL-235 807 chr2R 14277578 14277610 chr2R 14277659 14277712 12 97 6.0 5.0 5.5 1.8 134 chr2R 14277578 5` UTR Ih + chr2R 14277645 5` UTR Ih + chr2R 14277712 5` UTR Ih + chr2R_12_14275001 chr2R_14275001 RAL-235 808 chr2R 14283446 14283481 chr2R 14283543 14283569 7 93 2.5 7.0 4.8 1.2 123 chr2R 14283446 intron Ih + chr2R 14283508 intron Ih + chr2R 14283569 intron Ih + chr2R_7_14280001 chr2R_14280001 RAL-235 809 chr2R 14357538 14357545 chr2R 14357648 14357655 6 110 14.5 8.5 11.5 0.5 117 chr2R 14357538 intergenic CG8617 -,Arc1 - chr2R 14357596 intergenic CG8617 -,Arc1 - chr2R 14357655 intergenic Arc1 -,CG8617 - chr2R_6_14355001 chr2R_14355001 RAL-235 810 chr2R 14357546 14357576 chr2R 14357646 14357686 7 106 10.5 7.0 8.8 0.7 140 chr2R 14357546 intergenic CG8617 -,Arc1 - chr2R 14357616 intergenic Arc1 -,CG8617 - chr2R 14357686 intergenic Arc1 -,CG8617 - chr2R_7_14355001 chr2R_14355001 RAL-235 811 chr2R 14393860 14393897 chr2R 14393949 14393954 4 82 5.0 0.5 2.8 1.1 94 chr2R 14393860 intergenic not near genes chr2R 14393907 intergenic not near genes chr2R 14393954 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-235 812 chr2R 14394211 14394253 chr2R 14399020 14399027 Doc 8 4803 5.5 7.0 6.2 1.1 4816 chr2R 14394211 intergenic not near genes chr2R 14396619 intergenic not near genes chr2R 14399027 intergenic not near genes chr2R_8_14395001 chr2R_14395001 RAL-235 813 chr2R 14467289 14467326 chr2R 14476446 14476497 roo 12 9159 4.0 2.5 3.2 2.9 9208 chr2R 14467289 intergenic not near genes chr2R 14471893 intergenic not near genes chr2R 14476497 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-235 814 chr2R 14497379 14497420 chr2R 14498552 14498590 1360 12 1176 3.5 2.5 3.0 3.0 1211 chr2R 14497379 3` UTR Cpsf160 - chr2R 14497984 intron Cpsf160 - chr2R 14498590 3` UTR Cpsf160 - chr2R_12_14495001 chr2R_14495001 RAL-235 815 chr2R 14514471 14514492 chr2R 14514578 14514595 8 109 7.0 5.0 6.0 1.1 124 chr2R 14514471 intron,intron Cpr51A -,CG30197 + chr2R 14514533 intron,intron Cpr51A -,CG30197 + chr2R 14514595 intron,intron Cpr51A -,CG30197 + chr2R_8_14510001 chr2R_14510001 RAL-235 816 chr2R 14530352 14530367 chr2R 14530461 14530476 5 109 7.5 3.0 5.2 0.8 124 chr2R 14530352 intron ttv + chr2R 14530414 intron ttv + chr2R 14530476 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-235 817 chr2R 14643902 14643948 chr2R 14644039 14644078 14 139 2.5 4.0 3.2 3.3 176 chr2R 14643902 intergenic not near genes chr2R 14643990 intergenic not near genes chr2R 14644078 intergenic not near genes chr2R_14_14640001 chr2R_14640001 RAL-235 818 chr2R 14653888 14653920 chr2R 14654003 14654032 10 110 3.5 4.0 3.8 2.1 144 chr2R 14653888 intergenic not near genes chr2R 14653960 intergenic not near genes chr2R 14654032 intergenic not near genes chr2R_10_14650001 chr2R_14650001 RAL-235 819 chr2R 14728201 14728243 chr2R 14728304 14728346 11 98 6.0 8.0 7.0 1.4 145 chr2R 14728201 intergenic not near genes chr2R 14728274 intergenic not near genes chr2R 14728346 intergenic not near genes chr2R_11_14725001 chr2R_14725001 RAL-235 820 chr2R 14780437 14780443 chr2R 14780580 14780599 4 152 6.5 4.5 5.5 0.6 162 chr2R 14780437 intron kn - chr2R 14780518 intron kn - chr2R 14780599 intron kn - chr2R_4_14780001 chr2R_14780001 RAL-235 821 chr2R 14796320 14796359 chr2R 14796437 14796476 10 116 5.0 6.5 5.8 1.5 156 chr2R 14796320 intron kn - chr2R 14796398 intron kn - chr2R 14796476 intron kn - chr2R_10_14795001 chr2R_14795001 RAL-235 822 chr2R 14889195 14889225 chr2R 14897823 14897841 Max-element 10 8627 8.5 0.0 4.2 1.9 8646 chr2R 14889195 intergenic Cyp6a8 - chr2R 14893518 intergenic not near genes chr2R 14897841 intergenic not near genes chr2R_10_14890001 chr2R_14890001 RAL-235 823 chr2R 14911680 14911728 chr2R 14911823 14911871 15 142 3.0 3.0 3.0 3.8 191 chr2R 14911680 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911871 intron CG10249 - chr2R_15_14910001 chr2R_14910001 RAL-235 824 chr2R 14917247 14917259 chr2R 14917334 14917364 6 102 3.0 2.0 2.5 1.7 117 chr2R 14917247 intron CG10249 - chr2R 14917306 intron CG10249 - chr2R 14917364 intron CG10249 - chr2R_6_14915001 chr2R_14915001 RAL-235 825 chr2R 14922122 14922173 chr2R 14922218 14922250 21 90 3.5 1.5 2.5 6.0 128 chr2R 14922122 intron CG10249 - chr2R 14922186 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_21_14920001 chr2R_14920001 RAL-235 826 chr2R 14955647 14955675 chr2R 14955756 14955784 11 108 11.0 0.5 5.8 1.6 137 chr2R 14955647 intron aPKC - chr2R 14955716 intron aPKC - chr2R 14955784 intron aPKC - chr2R_11_14955001 chr2R_14955001 RAL-235 827 chr2R 14957646 14957674 chr2R 14957761 14957784 8 114 6.5 1.5 4.0 1.6 138 chr2R 14957646 intron aPKC - chr2R 14957715 intron aPKC - chr2R 14957784 intron aPKC - chr2R_8_14955001 chr2R_14955001 RAL-235 828 chr2R 14998497 14998512 chr2R 14998657 14998671 5 160 5.5 6.5 6.0 0.7 174 chr2R 14998497 intergenic not near genes chr2R 14998584 intergenic not near genes chr2R 14998671 intergenic not near genes chr2R_5_14995001 chr2R_14995001 RAL-235 829 chr2R 15004715 15004750 chr2R 15005059 15005099 jockey 12 348 4.0 7.0 5.5 1.8 384 chr2R 15004715 intergenic not near genes chr2R 15004907 intergenic not near genes chr2R 15005099 intergenic not near genes chr2R_12_15000001 chr2R_15000001 RAL-235 830 chr2R 15015443 15015489 chr2R 15022882 15022920 mdg1 12 7436 2.0 1.5 1.8 4.3 7477 chr2R 15015443 intron hbs + chr2R 15019182 intron hbs + chr2R 15022920 intron hbs + chr2R_12_15015001 chr2R_15015001 RAL-235 831 chr2R 15051069 15051093 chr2R 15051166 15051166 10 96 7.0 1.5 4.2 1.9 97 chr2R 15051069 intergenic not near genes chr2R 15051118 intergenic not near genes chr2R 15051166 intergenic not near genes chr2R_10_15050001 chr2R_15050001 RAL-235 832 chr2R 15084960 15085004 chr2R 15092029 15092073 297 13 7063 3.0 4.0 3.5 2.9 7113 chr2R 15084960 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092073 5` UTR CR44457 + chr2R_13_15085001 chr2R_15085001 RAL-235 833 chr2R 15119299 15119347 chr2R 15127798 15127848 Tirant 10 8488 3.0 2.5 2.8 2.6 8549 chr2R 15119299 intron chn + chr2R 15123574 intron chn + chr2R 15127848 intron chn + chr2R_10_15120001 chr2R_15120001 RAL-235 834 chr2R 15137947 15137999 chr2R 15138047 15138101 7 98 4.5 1.0 2.8 1.8 154 chr2R 15137947 intron chn + chr2R 15138024 intron chn + chr2R 15138101 5` UTR chn + chr2R_7_15135001 chr2R_15135001 RAL-235 835 chr2R 15230354 15230368 chr2R 15230671 15230675 5 310 32.5 0.0 16.2 0.3 321 chr2R 15230354 intron,5` UTR Fs -,CR44370 + chr2R 15230514 intron,5` UTR Fs -,CR44370 + chr2R 15230675 intron,5` UTR Fs -,CR44370 + chr2R_5_15230001 chr2R_15230001 RAL-235 836 chr2R 15250258 15250305 chr2R 15250363 15250399 6 92 0.0 7.0 3.5 1.3 141 chr2R 15250258 intron scb + chr2R 15250328 intron scb + chr2R 15250399 intron scb + chr2R_6_15250001 chr2R_15250001 RAL-235 837 chr2R 15259045 15259092 chr2R 15259148 15259190 22 102 5.5 5.5 5.5 3.4 145 chr2R 15259045 intron ItgalphaPS4 + chr2R 15259118 intron ItgalphaPS4 + chr2R 15259190 intron ItgalphaPS4 + chr2R_22_15255001 chr2R_15255001 RAL-235 838 chr2R 15296160 15296165 chr2R 15296248 15296262 4 98 6.5 5.5 6.0 0.6 102 chr2R 15296160 intron Trpm - chr2R 15296211 intron Trpm - chr2R 15296262 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-235 839 chr2R 15336266 15336307 chr2R 15336364 15336387 6 84 2.5 5.5 4.0 1.2 121 chr2R 15336266 intron Hr51 + chr2R 15336326 intron Hr51 + chr2R 15336387 intron Hr51 + chr2R_6_15335001 chr2R_15335001 RAL-235 840 chr2R 15395842 15395857 chr2R 15395967 15395982 5 124 10.5 4.5 7.5 0.6 140 chr2R 15395842 intergenic not near genes chr2R 15395912 intergenic not near genes chr2R 15395982 intergenic not near genes chr2R_5_15395001 chr2R_15395001 RAL-235 841 chr2R 15395863 15395880 chr2R 15395961 15396005 6 116 8.0 4.0 6.0 0.9 142 chr2R 15395863 intergenic not near genes chr2R 15395934 intergenic not near genes chr2R 15396005 intergenic not near genes chr2R_6_15395001 chr2R_15395001 RAL-235 842 chr2R 15472029 15472062 chr2R 15472133 15472165 4 104 0.0 5.5 2.8 1.1 136 chr2R 15472029 intergenic CG43729 +,CG8180 - chr2R 15472097 intergenic CG8180 -,CG43729 + chr2R 15472165 intergenic CG8180 -,CG43729 + chr2R_4_15470001 chr2R_15470001 RAL-235 843 chr2R 15501876 15501912 chr2R 15502158 15502188 9 279 1.0 5.0 3.0 2.2 312 chr2R 15501876 exon Ir52b + chr2R 15502032 exon Ir52b + chr2R 15502188 exon Ir52b + chr2R_9_15500001 chr2R_15500001 RAL-235 844 chr2R 15506436 15506489 chr2R 15506742 15506774 11 296 4.0 2.0 3.0 2.8 338 chr2R 15506436 intergenic Ir52d +,Ir52c + chr2R 15506605 exon Ir52d + chr2R 15506774 exon Ir52d + chr2R_11_15505001 chr2R_15505001 RAL-235 845 chr2R 15534664 15534697 chr2R 15534763 15534786 16 96 5.0 3.5 4.2 3.1 122 chr2R 15534664 intron CG30471 + chr2R 15534725 intron CG30471 + chr2R 15534786 intron CG30471 + chr2R_16_15530001 chr2R_15530001 RAL-235 846 chr2R 15606118 15606129 chr2R 15606211 15606226 4 95 7.5 2.0 4.8 0.7 108 chr2R 15606118 intergenic not near genes chr2R 15606172 intergenic not near genes chr2R 15606226 intergenic not near genes chr2R_4_15605001 chr2R_15605001 RAL-235 847 chr2R 15685352 15685395 chr2R 15685473 15685486 10 115 3.5 2.5 3.0 2.5 134 chr2R 15685352 intron,exon Ranbp11 +,CG30082 - chr2R 15685419 intron,intron Ranbp11 +,CG30082 - chr2R 15685486 intron,intron Ranbp11 +,CG30082 - chr2R_10_15685001 chr2R_15685001 RAL-235 848 chr2R 15702943 15702973 chr2R 15703040 15703067 5 96 3.0 5.5 4.2 1.0 124 chr2R 15702943 intergenic not near genes chr2R 15703005 intergenic not near genes chr2R 15703067 intergenic not near genes chr2R_5_15700001 chr2R_15700001 RAL-235 849 chr2R 15721433 15721478 chr2R 15721532 15721577 5 95 2.5 1.0 1.8 1.8 144 chr2R 15721433 intergenic not near genes chr2R 15721505 intergenic not near genes chr2R 15721577 intergenic not near genes chr2R_5_15720001 chr2R_15720001 RAL-235 850 chr2R 15833507 15833546 chr2R 15833613 15833636 4 100 2.5 2.0 2.2 1.2 129 chr2R 15833507 intron,intron tun +,Poxn - chr2R 15833572 intron,intron tun +,Poxn - chr2R 15833636 intron,intron tun +,Poxn - chr2R_4_15830001 chr2R_15830001 RAL-235 851 chr2R 15891803 15891833 chr2R 15891894 15891929 9 95 3.5 7.5 5.5 1.4 126 chr2R 15891803 intron sli - chr2R 15891866 intron sli - chr2R 15891929 intron sli - chr2R_9_15890001 chr2R_15890001 RAL-235 852 chr2R 16040754 16040800 chr2R 16040856 16040900 7 99 4.0 1.5 2.8 1.8 146 chr2R 16040754 intron SP2353 + chr2R 16040827 intron SP2353 + chr2R 16040900 exon SP2353 + chr2R_7_16040001 chr2R_16040001 RAL-235 853 chr2R 16106633 16106676 chr2R 16106857 16106895 8 227 15.0 16.5 15.8 0.5 262 chr2R 16106633 3` UTR Rho1 + chr2R 16106764 3` UTR Rho1 + chr2R 16106895 3` UTR Rho1 + chr2R_8_16105001 chr2R_16105001 RAL-235 854 chr2R 16136624 16136648 chr2R 16136721 16136739 6 96 3.0 4.0 3.5 1.3 115 chr2R 16136624 intron spin + chr2R 16136682 intron spin + chr2R 16136739 intron spin + chr2R_6_16135001 chr2R_16135001 RAL-235 855 chr2R 16245611 16245661 chr2R 16245719 16245749 18 103 4.5 3.0 3.8 3.8 138 chr2R 16245611 intron CngA - chr2R 16245680 intron CngA - chr2R 16245749 intron CngA - chr2R_18_16245001 chr2R_16245001 RAL-235 856 chr2R 16480728 16480779 chr2R 16480824 16480875 10 92 5.0 4.5 4.8 1.7 147 chr2R 16480728 intergenic not near genes chr2R 16480802 intergenic not near genes chr2R 16480875 intergenic not near genes chr2R_10_16480001 chr2R_16480001 RAL-235 857 chr2R 16489251 16489264 chr2R 16489355 16489368 7 104 10.0 5.0 7.5 0.8 117 chr2R 16489251 intergenic CG33459 + chr2R 16489310 intergenic CG33459 + chr2R 16489368 intergenic CG33459 + chr2R_7_16485001 chr2R_16485001 RAL-235 858 chr2R 16489265 16489295 chr2R 16489353 16489394 10 97 3.5 5.0 4.2 1.9 129 chr2R 16489265 intergenic CG33459 + chr2R 16489330 intergenic CG33459 + chr2R 16489394 intergenic CG33459 + chr2R_10_16485001 chr2R_16485001 RAL-235 859 chr2R 16518036 16518059 chr2R 16518126 16518155 4 94 6.0 5.0 5.5 0.6 119 chr2R 16518036 intron Sema-2a + chr2R 16518096 intron Sema-2a + chr2R 16518155 intron Sema-2a + chr2R_4_16515001 chr2R_16515001 RAL-235 860 chr2R 16539622 16539629 chr2R 16544851 16544858 copia 4 5229 12.0 5.5 8.8 0.4 5236 chr2R 16539622 intergenic not near genes chr2R 16542240 intergenic not near genes chr2R 16544858 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-235 861 chr2R 16539632 16539643 chr2R 16544850 16544872 copia 4 5226 11.0 5.5 8.2 0.4 5240 chr2R 16539632 intergenic not near genes chr2R 16542252 intergenic not near genes chr2R 16544872 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-235 862 chr2R 16539646 16539670 chr2R 16544845 16544899 copia 9 5221 6.0 4.5 5.2 1.5 5253 chr2R 16539646 intergenic not near genes chr2R 16542272 intergenic not near genes chr2R 16544899 intergenic not near genes chr2R_9_16540001 chr2R_16540001 RAL-235 863 chr2R 16546989 16547024 chr2R 16547083 16547104 4 88 0.0 1.0 0.5 2.7 115 chr2R 16546989 intergenic not near genes chr2R 16547046 intergenic not near genes chr2R 16547104 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-235 864 chr2R 16571859 16571906 chr2R 16571969 16572021 22 114 2.5 5.0 3.8 4.6 162 chr2R 16571859 intergenic CG4927 + chr2R 16571940 intergenic CG4927 + chr2R 16572021 intergenic CG4927 + chr2R_22_16570001 chr2R_16570001 RAL-235 865 chr2R 16617061 16617086 chr2R 16617149 16617178 5 93 3.0 5.0 4.0 1.0 117 chr2R 16617061 intron CG5065 + chr2R 16617120 intron CG5065 + chr2R 16617178 intron CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-235 866 chr2R 16705215 16705259 chr2R 16705363 16705407 22 142 3.5 6.0 4.8 3.8 192 chr2R 16705215 intron CG30463 - chr2R 16705311 intron CG30463 - chr2R 16705407 intron CG30463 - chr2R_22_16705001 chr2R_16705001 RAL-235 867 chr2R 16713057 16713066 chr2R 16713160 16713169 4 103 0.0 2.0 1.0 2.0 112 chr2R 16713057 intron CG30463 - chr2R 16713113 intron CG30463 - chr2R 16713169 intron CG30463 - chr2R_4_16710001 chr2R_16710001 RAL-235 868 chr2R 16775643 16775674 chr2R 16775930 16775945 13 281 5.0 10.0 7.5 1.5 302 chr2R 16775643 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775945 intergenic Arp53D + chr2R_13_16775001 chr2R_16775001 RAL-235 869 chr2R 16779517 16779523 chr2R 16779701 16779707 6 184 0.0 5.0 2.5 1.7 190 chr2R 16779517 intergenic resilin + chr2R 16779612 intergenic resilin + chr2R 16779707 intergenic resilin + chr2R_6_16775001 chr2R_16775001 RAL-235 870 chr2R 16779526 16779534 chr2R 16779687 16779718 8 176 0.0 4.5 2.2 2.5 192 chr2R 16779526 intergenic resilin + chr2R 16779622 intergenic resilin + chr2R 16779718 intergenic resilin + chr2R_8_16775001 chr2R_16775001 RAL-235 871 chr2R 16787456 16787494 chr2R 16787556 16787591 11 99 5.0 2.0 3.5 2.4 135 chr2R 16787456 intron CG5522 + chr2R 16787524 intron CG5522 + chr2R 16787591 intron CG5522 + chr2R_11_16785001 chr2R_16785001 RAL-235 872 chr2R 16893765 16893805 chr2R 16893858 16893908 8 100 2.0 2.5 2.2 2.5 143 chr2R 16893765 intron CG8910 - chr2R 16893836 intron CG8910 - chr2R 16893908 intron CG8910 - chr2R_8_16890001 chr2R_16890001 RAL-235 873 chr2R 16986222 16986270 chr2R 16986341 16986389 5 119 2.0 9.0 5.5 0.8 167 chr2R 16986222 intron Cbp53E + chr2R 16986306 intron Cbp53E + chr2R 16986389 intron Cbp53E + chr2R_5_16985001 chr2R_16985001 RAL-235 874 chr2R 17132841 17132855 chr2R 17132961 17132975 4 120 6.5 0.0 3.2 1.0 134 chr2R 17132841 intergenic not near genes chr2R 17132908 intergenic not near genes chr2R 17132975 intergenic Acp54A1 + chr2R_4_17130001 chr2R_17130001 RAL-235 875 chr2R 17132955 17132998 chr2R 17133539 17133584 11 584 0.0 3.5 1.8 3.9 629 chr2R 17132955 intergenic Acp54A1 + chr2R 17133270 intergenic Acp54A1 + chr2R 17133584 exon Acp54A1 + chr2R_11_17130001 chr2R_17130001 RAL-235 876 chr2R 17161159 17161200 chr2R 17161254 17161292 8 101 3.0 2.5 2.8 2.1 133 chr2R 17161159 intergenic CG30457 - chr2R 17161226 intergenic CG30457 - chr2R 17161292 intergenic CG30457 - chr2R_8_17160001 chr2R_17160001 RAL-235 877 chr2R 17176371 17176386 chr2R 17182550 17182590 diver 8 6205 1.0 7.0 4.0 1.6 6219 chr2R 17176371 intergenic not near genes chr2R 17179480 intergenic not near genes chr2R 17182590 intergenic not near genes chr2R_8_17175001 chr2R_17175001 RAL-235 878 chr2R 17202929 17202956 chr2R 17203036 17203063 7 103 2.5 3.5 3.0 1.8 134 chr2R 17202929 intergenic not near genes chr2R 17202996 intergenic not near genes chr2R 17203063 intergenic not near genes chr2R_7_17200001 chr2R_17200001 RAL-235 879 chr2R 17236509 17236540 chr2R 17241710 17241755 copia 8 5210 3.0 2.0 2.5 2.3 5246 chr2R 17236509 intron mbl + chr2R 17239132 intron mbl + chr2R 17241755 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-235 880 chr2R 17247958 17248007 chr2R 17248095 17248130 12 131 3.0 4.0 3.5 2.7 172 chr2R 17247958 intron mbl + chr2R 17248044 intron mbl + chr2R 17248130 intron mbl + chr2R_12_17245001 chr2R_17245001 RAL-235 881 chr2R 17259115 17259158 chr2R 17259251 17259294 9 129 3.5 1.0 2.2 2.8 179 chr2R 17259115 intron mbl + chr2R 17259204 intron mbl + chr2R 17259294 intron mbl + chr2R_9_17255001 chr2R_17255001 RAL-235 882 chr2R 17261502 17261514 chr2R 17261594 17261615 6 103 2.0 9.5 5.8 0.9 113 chr2R 17261502 intron mbl + chr2R 17261558 intron mbl + chr2R 17261615 intron mbl + chr2R_6_17260001 chr2R_17260001 RAL-235 883 chr2R 17389643 17389688 chr2R 17389764 17389807 13 115 6.0 6.0 6.0 1.9 164 chr2R 17389643 intergenic not near genes chr2R 17389725 intergenic not near genes chr2R 17389807 intergenic not near genes chr2R_13_17385001 chr2R_17385001 RAL-235 884 chr2R 17485899 17485950 chr2R 17490689 17490736 F-element 10 4788 5.0 5.0 5.0 1.7 4837 chr2R 17485899 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488318 intron NT5E-2 + chr2R 17490736 intron NT5E-2 + chr2R_10_17485001 chr2R_17485001 RAL-235 885 chr2R 17598930 17598965 chr2R 17599031 17599071 9 104 2.5 2.0 2.2 2.8 141 chr2R 17598930 intron,3` UTR lack +,CG43920 - chr2R 17599000 intron,3` UTR lack +,CG43920 - chr2R 17599071 intron,3` UTR lack +,CG43920 - chr2R_9_17595001 chr2R_17595001 RAL-235 886 chr2R 17629588 17629630 chr2R 17629687 17629721 17 95 3.0 5.0 4.0 3.4 133 chr2R 17629588 intron,intron CG10936 -,rhi - chr2R 17629654 intron,intron CG10936 -,rhi - chr2R 17629721 intron,intron CG10936 -,rhi - chr2R_17_17625001 chr2R_17625001 RAL-235 887 chr2R 17637820 17637855 chr2R 17637910 17637938 14 94 1.0 2.0 1.5 5.6 118 chr2R 17637820 intron CG10936 - chr2R 17637879 intron CG10936 - chr2R 17637938 intron CG10936 - chr2R_14_17635001 chr2R_17635001 RAL-235 888 chr2R 17709961 17710118 chr2R 17710072 17710198 12 99 0.5 0.5 0.5 8.0 237 chr2R 17709961 intron CG6424 - chr2R 17710080 intron CG6424 - chr2R 17710198 intron CG6424 - chr2R_12_17710001 chr2R_17710001 RAL-235 889 chr2R 17724835 17724874 chr2R 17724930 17724963 4 82 1.0 3.5 2.2 1.2 128 chr2R 17724835 exon CG10933 + chr2R 17724899 3` UTR CG10933 + chr2R 17724963 3` UTR CG10933 + chr2R_4_17720001 chr2R_17720001 RAL-235 890 chr2R 17782346 17782394 chr2R 17783567 17783617 pogo 10 1221 3.5 5.5 4.5 1.8 1271 chr2R 17782346 intergenic CG33981 -,fab1 - chr2R 17782982 intergenic not near genes chr2R 17783617 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-235 891 chr2R 17784017 17784052 chr2R 17784275 17784308 pogo 6 256 0.5 1.0 0.8 3.3 291 chr2R 17784017 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784308 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-235 892 chr2R 17785095 17785103 chr2R 17785185 17785185 5 96 2.0 4.5 3.2 1.2 90 chr2R 17785095 intergenic not near genes chr2R 17785140 intergenic not near genes chr2R 17785185 intergenic not near genes chr2R_5_17785001 chr2R_17785001 RAL-235 893 chr2R 17885095 17885113 chr2R 17885210 17885228 7 114 9.5 4.0 6.8 0.9 133 chr2R 17885095 intron Elk + chr2R 17885162 intron Elk + chr2R 17885228 intron Elk + chr2R_7_17885001 chr2R_17885001 RAL-235 894 chr2R 17885119 17885142 chr2R 17885209 17885254 5 103 5.0 4.0 4.5 0.9 135 chr2R 17885119 intron Elk + chr2R 17885186 intron Elk + chr2R 17885254 intron Elk + chr2R_5_17885001 chr2R_17885001 RAL-235 895 chr2R 17918145 17918194 chr2R 17918238 17918266 12 82 2.0 2.0 2.0 4.0 121 chr2R 17918145 intron Elk + chr2R 17918206 intron Elk + chr2R 17918266 intron Elk + chr2R_12_17915001 chr2R_17915001 RAL-235 896 chr2R 17997140 17997194 chr2R 17997239 17997287 10 93 4.5 5.5 5.0 1.7 147 chr2R 17997140 intron dpr13 - chr2R 17997214 intron dpr13 - chr2R 17997287 intron dpr13 - chr2R_10_17995001 chr2R_17995001 RAL-235 897 chr2R 17998014 17998049 chr2R 17998102 17998150 8 96 3.0 2.5 2.8 2.1 136 chr2R 17998014 intron dpr13 - chr2R 17998082 intron dpr13 - chr2R 17998150 intron dpr13 - chr2R_8_17995001 chr2R_17995001 RAL-235 898 chr2R 18035415 18035427 chr2R 18035490 18035500 4 81 2.5 2.5 2.5 1.1 85 chr2R 18035415 intergenic not near genes chr2R 18035458 intergenic not near genes chr2R 18035500 intergenic not near genes chr2R_4_18035001 chr2R_18035001 RAL-235 899 chr2R 18042819 18042999 chr2R 18042943 18043111 6 120 0.0 0.0 0.0 6.0 292 chr2R 18042819 3` UTR CG5773 - chr2R 18042965 3` UTR CG5773 - chr2R 18043111 3` UTR CG5773 - chr2R_6_18040001 chr2R_18040001 RAL-235 900 chr2R 18045275 18045327 chr2R 18045383 18045419 22 104 5.0 5.0 5.0 3.7 144 chr2R 18045275 intergenic CG5770 - chr2R 18045347 intergenic CG5770 - chr2R 18045419 intergenic CG5770 - chr2R_22_18045001 chr2R_18045001 RAL-235 901 chr2R 18045653 18045701 chr2R 18046025 18046073 jockey 13 369 3.5 4.0 3.8 2.7 420 chr2R 18045653 intergenic not near genes chr2R 18045863 intergenic not near genes chr2R 18046073 intergenic CG5767 - chr2R_13_18045001 chr2R_18045001 RAL-235 902 chr2R 18111669 18111711 chr2R 18115557 18115599 F-element 12 3886 6.0 4.0 5.0 2.0 3930 chr2R 18111669 intergenic not near genes chr2R 18113634 intergenic not near genes chr2R 18115599 intergenic not near genes chr2R_12_18110001 chr2R_18110001 RAL-235 903 chr2R 18171476 18171518 chr2R 18171635 18171662 9 157 6.5 5.5 6.0 1.3 186 chr2R 18171476 intron Dgp-1 - chr2R 18171569 intron Dgp-1 - chr2R 18171662 intron Dgp-1 - chr2R_9_18170001 chr2R_18170001 RAL-235 904 chr2R 18193250 18193280 chr2R 18196364 18196394 7 3115 12.0 16.5 14.2 0.5 3144 chr2R 18193250 intergenic CG33958 - chr2R 18194822 intergenic not near genes chr2R 18196394 intergenic not near genes chr2R_7_18190001 chr2R_18190001 RAL-235 905 chr2R 18358380 18358402 chr2R 18372607 18372634 roo 9 14229 5.0 4.0 4.5 1.6 14254 chr2R 18358380 intergenic not near genes chr2R 18365507 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_9_18365001 chr2R_18365001 RAL-235 906 chr2R 18358403 18358412 chr2R 18372597 18372631 roo 7 14219 4.0 3.0 3.5 1.6 14228 chr2R 18358403 intergenic not near genes chr2R 18365517 intergenic not near genes chr2R 18372631 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-235 907 chr2R 18405768 18405770 chr2R 18405834 18405870 4 92 8.5 0.0 4.2 0.8 102 chr2R 18405768 intergenic GstE6 +,GstE5 + chr2R 18405819 intergenic GstE6 +,GstE5 + chr2R 18405870 intergenic GstE6 + chr2R_4_18405001 chr2R_18405001 RAL-235 908 chr2R 18405772 18405786 chr2R 18405833 18405885 7 94 5.0 0.0 2.5 2.0 113 chr2R 18405772 intergenic GstE6 +,GstE5 + chr2R 18405828 intergenic GstE6 +,GstE5 + chr2R 18405885 intergenic GstE6 + chr2R_7_18405001 chr2R_18405001 RAL-235 909 chr2R 18408283 18408304 chr2R 18408415 18408433 5 131 4.0 5.5 4.8 0.9 150 chr2R 18408283 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408433 exon GstE8 + chr2R_5_18405001 chr2R_18405001 RAL-235 910 chr2R 18480440 18480484 chr2R 18480567 18480611 4 118 0.0 0.0 0.0 4.0 171 chr2R 18480440 intron CG30116 - chr2R 18480526 intron CG30116 - chr2R 18480611 intron CG30116 - chr2R_4_18480001 chr2R_18480001 RAL-235 911 chr2R 18487826 18487854 chr2R 18495296 18495344 blood 7 7474 0.0 5.5 2.8 1.8 7518 chr2R 18487826 intron CG30116 - chr2R 18491585 intron CG30116 - chr2R 18495344 intron CG30116 - chr2R_7_18490001 chr2R_18490001 RAL-235 912 chr2R 18511566 18511616 chr2R 18511673 18511722 9 102 6.5 3.5 5.0 1.5 156 chr2R 18511566 intergenic not near genes chr2R 18511644 intergenic not near genes chr2R 18511722 intergenic not near genes chr2R_9_18510001 chr2R_18510001 RAL-235 913 chr2R 18513421 18513470 chr2R 18513909 18513958 17 486 3.0 1.0 2.0 5.7 537 chr2R 18513421 intergenic not near genes chr2R 18513690 intergenic not near genes chr2R 18513958 intergenic not near genes chr2R_17_18510001 chr2R_18510001 RAL-235 914 chr2R 18575810 18575826 chr2R 18581984 18582034 3S18 9 6193 3.0 2.5 2.8 2.4 6224 chr2R 18575810 intron GEFmeso - chr2R 18578922 intron GEFmeso - chr2R 18582034 intron GEFmeso - chr2R_9_18575001 chr2R_18575001 RAL-235 915 chr2R 18590860 18590879 chr2R 18600023 18600051 roo 5 9168 5.5 2.5 4.0 1.0 9191 chr2R 18590860 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600051 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-235 916 chr2R 18600550 18600571 chr2R 18600619 18600645 8 78 2.0 0.5 1.2 3.6 95 chr2R 18600550 intron GEFmeso - chr2R 18600598 intron GEFmeso - chr2R 18600645 intron GEFmeso - chr2R_8_18600001 chr2R_18600001 RAL-235 917 chr2R 18604413 18604455 chr2R 18604505 18604546 10 83 2.0 4.5 3.2 2.4 133 chr2R 18604413 intron GEFmeso - chr2R 18604480 intron GEFmeso - chr2R 18604546 intron GEFmeso - chr2R_10_18600001 chr2R_18600001 RAL-235 918 chr2R 18692880 18692905 chr2R 18692987 18693006 4 102 4.5 4.5 4.5 0.7 126 chr2R 18692880 intron Sik3 + chr2R 18692943 intron Sik3 + chr2R 18693006 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-235 919 chr2R 18713220 18713266 chr2R 18713313 18713348 18 92 3.0 3.5 3.2 4.3 128 chr2R 18713220 intergenic not near genes chr2R 18713284 intergenic not near genes chr2R 18713348 intergenic not near genes chr2R_18_18710001 chr2R_18710001 RAL-235 920 chr2R 18785899 18785945 chr2R 18785994 18786031 7 95 2.5 1.5 2.0 2.3 132 chr2R 18785899 intron CG15080 + chr2R 18785965 intron CG15080 + chr2R 18786031 intron CG15080 + chr2R_7_18785001 chr2R_18785001 RAL-235 921 chr2R 18808064 18808075 chr2R 18808152 18808184 7 105 0.5 0.0 0.2 5.8 120 chr2R 18808064 intergenic CG15096 - chr2R 18808124 intergenic CG15096 - chr2R 18808184 intergenic CG15096 - chr2R_7_18805001 chr2R_18805001 RAL-235 922 chr2R 18819022 18819065 chr2R 18819120 18819162 4 97 0.5 0.5 0.5 2.7 140 chr2R 18819022 intergenic Phb2 + chr2R 18819092 intergenic Phb2 + chr2R 18819162 intergenic Phb2 + chr2R_4_18815001 chr2R_18815001 RAL-235 923 chr2R 18862294 18862401 chr2R 18862401 18862475 7 113 0.0 0.0 0.0 7.0 181 chr2R 18862294 intergenic Jheh3 - chr2R 18862384 intergenic Jheh3 -,CG43069 + chr2R 18862475 intergenic CG43069 +,Jheh3 - chr2R_7_18860001 chr2R_18860001 RAL-235 924 chr2R 18930431 18930481 chr2R 18930544 18930594 15 108 5.0 5.5 5.2 2.4 163 chr2R 18930431 intron sano + chr2R 18930512 intron sano + chr2R 18930594 intron sano + chr2R_15_18930001 chr2R_18930001 RAL-235 925 chr2R 18931174 18931214 chr2R 18931286 18931326 12 109 6.0 5.5 5.8 1.8 152 chr2R 18931174 intron sano + chr2R 18931250 intron sano + chr2R 18931326 intron sano + chr2R_12_18930001 chr2R_18930001 RAL-235 926 chr2R 18953149 18953192 chr2R 18953247 18953299 19 103 2.0 2.5 2.2 5.9 150 chr2R 18953149 intron sano + chr2R 18953224 intron sano + chr2R 18953299 intron sano + chr2R_19_18950001 chr2R_18950001 RAL-235 927 chr2R 18989001 18989047 chr2R 18989099 18989139 23 95 2.0 4.0 3.0 5.8 138 chr2R 18989001 intron tn + chr2R 18989070 intron tn + chr2R 18989139 intron tn + chr2R_23_18985001 chr2R_18985001 RAL-235 928 chr2R 19050711 19050726 chr2R 19050819 19050832 4 106 1.5 8.5 5.0 0.7 121 chr2R 19050711 intergenic not near genes chr2R 19050772 intergenic not near genes chr2R 19050832 intergenic not near genes chr2R_4_19050001 chr2R_19050001 RAL-235 929 chr2R 19300941 19300995 chr2R 19301043 19301072 16 99 2.5 3.5 3.0 4.0 131 chr2R 19300941 intron Tab2 + chr2R 19301006 intron Tab2 + chr2R 19301072 intron Tab2 + chr2R_16_19300001 chr2R_19300001 RAL-235 930 chr2R 19384940 19384952 chr2R 19385046 19385049 4 105 7.5 0.0 3.8 0.8 109 chr2R 19384940 3` UTR CG10073 + chr2R 19384994 intergenic CG10073 + chr2R 19385049 intergenic CG10073 + chr2R_4_19380001 chr2R_19380001 RAL-235 931 chr2R 19385099 19385145 chr2R 19385656 19385706 9 560 1.0 9.5 5.2 1.5 607 chr2R 19385099 intergenic CG10073 + chr2R 19385402 intergenic CG10073 + chr2R 19385706 intergenic CG10081 + chr2R_9_19385001 chr2R_19385001 RAL-235 932 chr2R 19537127 19537141 chr2R 19537235 19537250 4 108 4.5 1.0 2.8 1.1 123 chr2R 19537127 intron sm - chr2R 19537188 intron sm - chr2R 19537250 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-235 933 chr2R 19537149 19537171 chr2R 19537230 19537257 5 96 2.0 1.0 1.5 2.0 108 chr2R 19537149 intron sm - chr2R 19537203 intron sm - chr2R 19537257 intron sm - chr2R_5_19535001 chr2R_19535001 RAL-235 934 chr2R 19701503 19701544 chr2R 19701606 19701648 18 100 1.5 4.0 2.8 4.7 145 chr2R 19701503 intergenic Obp56c - chr2R 19701576 intergenic Obp56c - chr2R 19701648 intergenic not near genes chr2R_18_19700001 chr2R_19700001 RAL-235 935 chr2R 19714724 19714738 chr2R 19714790 19714834 4 88 0.5 3.5 2.0 1.3 110 chr2R 19714724 3` UTR CG8517 + chr2R 19714779 3` UTR CG8517 + chr2R 19714834 3` UTR CG8517 + chr2R_4_19710001 chr2R_19710001 RAL-235 936 chr2R 19715839 19715857 chr2R 19723328 19723345 blood 6 7488 9.0 6.5 7.8 0.7 7506 chr2R 19715839 intergenic not near genes chr2R 19719592 intergenic not near genes chr2R 19723345 intergenic not near genes chr2R_6_19715001 chr2R_19715001 RAL-235 937 chr2R 19776593 19776620 chr2R 19779936 19779958 jockey 6 3341 3.5 6.0 4.8 1.0 3365 chr2R 19776593 intergenic not near genes chr2R 19778276 intergenic not near genes chr2R 19779958 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-235 938 chr2R 19794860 19794884 chr2R 19794983 19794984 4 115 2.0 1.0 1.5 1.6 124 chr2R 19794860 intergenic not near genes chr2R 19794922 intergenic not near genes chr2R 19794984 intergenic not near genes chr2R_4_19790001 chr2R_19790001 RAL-235 939 chr2R 19794898 19794901 chr2R 19794970 19795017 4 98 1.5 1.0 1.2 1.8 119 chr2R 19794898 intergenic not near genes chr2R 19794958 intergenic not near genes chr2R 19795017 intergenic not near genes chr2R_4_19790001 chr2R_19790001 RAL-235 940 chr2R 19914831 19914870 chr2R 19922263 19922302 mdg1 15 7426 6.0 3.0 4.5 2.7 7471 chr2R 19914831 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922302 intergenic not near genes chr2R_15_19915001 chr2R_19915001 RAL-235 941 chr2R 19926005 19926038 chr2R 19926108 19926141 12 100 6.0 7.5 6.8 1.5 136 chr2R 19926005 intergenic CR44626 - chr2R 19926073 intergenic CR44626 - chr2R 19926141 intergenic CR44626 - chr2R_12_19925001 chr2R_19925001 RAL-235 942 chr2R 19943254 19943282 chr2R 19943384 19943407 10 128 3.5 2.0 2.8 2.6 153 chr2R 19943254 intergenic not near genes chr2R 19943330 intergenic not near genes chr2R 19943407 intergenic not near genes chr2R_10_19940001 chr2R_19940001 RAL-235 943 chr2R 19957425 19957457 chr2R 19962632 19962647 copia 6 5209 4.0 1.5 2.8 1.6 5222 chr2R 19957425 intergenic CG44623 + chr2R 19960036 intergenic not near genes chr2R 19962647 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-235 944 chr2R 20029417 20029461 chr2R 20029513 20029520 16 90 4.5 1.0 2.8 4.2 103 chr2R 20029417 intergenic not near genes chr2R 20029468 intergenic not near genes chr2R 20029520 intergenic not near genes chr2R_16_20025001 chr2R_20025001 RAL-235 945 chr2R 20031894 20031939 chr2R 20032010 20032055 9 113 3.5 5.5 4.5 1.6 161 chr2R 20031894 intergenic not near genes chr2R 20031974 intergenic not near genes chr2R 20032055 intergenic not near genes chr2R_9_20030001 chr2R_20030001 RAL-235 946 chr2R 20069229 20069261 chr2R 20071879 20071881 opus 11 2644 5.5 4.0 4.8 1.9 2652 chr2R 20069229 intergenic not near genes chr2R 20070555 intergenic not near genes chr2R 20071881 intergenic not near genes chr2R_11_20070001 chr2R_20070001 RAL-235 947 chr2R 20069266 20069276 chr2R 20071876 20071926 opus 5 2631 4.0 3.0 3.5 1.1 2660 chr2R 20069266 intergenic not near genes chr2R 20070596 intergenic not near genes chr2R 20071926 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-235 948 chr2R 20079400 20079452 chr2R 20079825 20079878 19 424 3.0 4.5 3.8 4.0 478 chr2R 20079400 intergenic not near genes chr2R 20079639 intergenic not near genes chr2R 20079878 intergenic not near genes chr2R_19_20075001 chr2R_20075001 RAL-235 949 chr2R 20080602 20080617 chr2R 20080699 20080713 4 96 0.0 11.0 5.5 0.6 111 chr2R 20080602 intergenic not near genes chr2R 20080658 intergenic not near genes chr2R 20080713 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-235 950 chr2R 20118875 20118890 chr2R 20118971 20118993 4 101 1.0 4.0 2.5 1.1 118 chr2R 20118875 intergenic not near genes chr2R 20118934 intergenic not near genes chr2R 20118993 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-235 951 chr2R 20199199 20199247 chr2R 20199296 20199312 9 92 2.0 3.0 2.5 2.6 113 chr2R 20199199 intergenic not near genes chr2R 20199256 intergenic not near genes chr2R 20199312 intergenic not near genes chr2R_9_20195001 chr2R_20195001 RAL-235 952 chr2R 20223948 20223983 chr2R 20224043 20224088 5 101 5.5 4.5 5.0 0.8 140 chr2R 20223948 intergenic not near genes chr2R 20224018 intergenic not near genes chr2R 20224088 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-235 953 chr2R 20379137 20379148 chr2R 20379240 20379251 4 103 7.0 0.0 3.5 0.9 114 chr2R 20379137 intergenic not near genes chr2R 20379194 intergenic not near genes chr2R 20379251 intergenic not near genes chr2R_4_20375001 chr2R_20375001 RAL-235 954 chr2R 20434098 20434102 chr2R 20434183 20434208 4 96 0.0 2.5 1.2 1.8 110 chr2R 20434098 intron CG12484 + chr2R 20434153 intron CG12484 + chr2R 20434208 intron CG12484 + chr2R_4_20430001 chr2R_20430001 RAL-235 955 chr2R 20449226 20449254 chr2R 20449316 20449347 7 90 2.5 5.5 4.0 1.4 121 chr2R 20449226 intron CG12484 + chr2R 20449286 intron CG12484 + chr2R 20449347 intron CG12484 + chr2R_7_20445001 chr2R_20445001 RAL-235 956 chr2R 20511870 20511896 chr2R 20512586 20512608 10 720 2.0 4.0 3.0 2.5 738 chr2R 20511870 intergenic CR44649 +,CR44648 + chr2R 20512239 intergenic CR44649 +,CG13426 - chr2R 20512608 intergenic CG13426 - chr2R_10_20510001 chr2R_20510001 RAL-235 957 chr2R 20725030 20725078 chr2R 20725172 20725220 12 134 3.0 1.0 2.0 4.0 190 chr2R 20725030 intron dpr + chr2R 20725125 intron dpr + chr2R 20725220 intron dpr + chr2R_12_20725001 chr2R_20725001 RAL-235 958 chr2R 20776514 20776562 chr2R 20776612 20776659 4 96 4.0 0.0 2.0 1.3 145 chr2R 20776514 intergenic CG43709 -,CG43710 - chr2R 20776586 intergenic CG43710 -,CG43709 - chr2R 20776659 intergenic CG43710 -,CG43709 - chr2R_4_20775001 chr2R_20775001 RAL-235 959 chr2R 20783295 20783332 chr2R 20788087 20788100 F-element 6 4787 3.5 6.0 4.8 1.0 4805 chr2R 20783295 intergenic not near genes chr2R 20785698 intergenic not near genes chr2R 20788100 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-235 960 chr2R 20810240 20810271 chr2R 20810387 20810416 6 146 1.5 2.5 2.0 2.0 176 chr2R 20810240 intergenic not near genes chr2R 20810328 intergenic not near genes chr2R 20810416 intergenic not near genes chr2R_6_20810001 chr2R_20810001 RAL-235 961 chr2R 20838058 20838078 chr2R 20838139 20838179 10 99 0.0 3.5 1.8 3.6 121 chr2R 20838058 intron CR44667 + chr2R 20838118 intron CR44667 + chr2R 20838179 intron CR44667 + chr2R_10_20835001 chr2R_20835001 RAL-235 962 chr2R 20962887 20962935 chr2R 20963005 20963022 11 115 4.0 2.0 3.0 2.8 135 chr2R 20962887 intergenic not near genes chr2R 20962954 intergenic not near genes chr2R 20963022 intergenic not near genes chr2R_11_20960001 chr2R_20960001 RAL-235 963 chr2R 20967021 20967060 chr2R 20967107 20967146 8 91 3.5 0.0 1.8 2.9 125 chr2R 20967021 intergenic not near genes chr2R 20967084 intergenic not near genes chr2R 20967146 intergenic not near genes chr2R_8_20965001 chr2R_20965001 RAL-235 964 chr2R 21079957 21079973 chr2R 21080060 21080076 7 103 14.5 7.0 10.8 0.6 119 chr2R 21079957 intron Treh + chr2R 21080016 intron Treh + chr2R 21080076 intron Treh + chr2R_7_21080001 chr2R_21080001 RAL-235 965 chr2R 21079974 21079982 chr2R 21080057 21080085 6 99 11.0 6.0 8.5 0.6 111 chr2R 21079974 intron Treh + chr2R 21080030 intron Treh + chr2R 21080085 intron Treh + chr2R_6_21080001 chr2R_21080001 RAL-235 966 chr2R 21103529 21103552 chr2R 21103629 21103652 6 97 4.0 1.0 2.5 1.7 123 chr2R 21103529 intron ktub + chr2R 21103590 intron ktub + chr2R 21103652 intron ktub + chr2R_6_21100001 chr2R_21100001 RAL-235 967 chr2R 21136886 21136917 chr2R 21136981 21137021 11 98 3.5 8.5 6.0 1.6 135 chr2R 21136886 intron Magi - chr2R 21136954 intron Magi - chr2R 21137021 intron Magi - chr2R_11_21135001 chr2R_21135001 RAL-235 968 chr2R 21241752 21241800 chr2R 21242616 21242654 15 860 5.5 2.0 3.8 3.1 902 chr2R 21241752 intron ASPP - chr2R 21242203 intron ASPP - chr2R 21242654 intron ASPP - chr2R_15_21240001 chr2R_21240001 RAL-235 969 chr2R 21285414 21285436 chr2R 21285511 21285533 5 96 10.0 10.5 10.2 0.4 119 chr2R 21285414 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285474 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285533 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_5_21285001 chr2R_21285001 RAL-235 970 chr2R 21417257 21417276 chr2R 21417378 21417378 6 115 6.5 0.0 3.2 1.4 121 chr2R 21417257 intron Sdc - chr2R 21417318 intron Sdc - chr2R 21417378 intron Sdc - chr2R_6_21415001 chr2R_21415001 RAL-235 971 chr2R 21422912 21422935 chr2R 21423909 21423941 4 998 5.0 3.5 4.2 0.8 1029 chr2R 21422912 intron Sdc - chr2R 21423426 intron Sdc - chr2R 21423941 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-235 972 chr2R 21461451 21461485 chr2R 21461569 21461604 10 120 1.5 0.5 1.0 5.0 153 chr2R 21461451 intron Sdc - chr2R 21461528 intron Sdc - chr2R 21461604 intron Sdc - chr2R_10_21460001 chr2R_21460001 RAL-235 973 chr2R 21476073 21476117 chr2R 21477087 21477131 8 1011 4.0 3.0 3.5 1.8 1058 chr2R 21476073 intron Sdc - chr2R 21476602 intron Sdc - chr2R 21477131 intron Sdc - chr2R_8_21475001 chr2R_21475001 RAL-235 974 chr2R 21540672 21540949 chr2R 21540905 21541042 18 158 1.0 0.5 0.8 10.0 370 chr2R 21540672 intron Egfr + chr2R 21540857 intron Egfr + chr2R 21541042 intron Egfr + chr2R_18_21540001 chr2R_21540001 RAL-235 975 chr2R 21700172 21700184 chr2R 21700243 21700282 4 81 1.0 6.0 3.5 0.9 110 chr2R 21700172 intron HmgZ - chr2R 21700227 intron HmgZ - chr2R 21700282 intron HmgZ - chr2R_4_21700001 chr2R_21700001 RAL-235 976 chr2R 21721560 21721609 chr2R 21721665 21721705 15 102 3.0 2.0 2.5 4.3 145 chr2R 21721560 intron LBR + chr2R 21721632 intron LBR + chr2R 21721705 intron LBR + chr2R_15_21720001 chr2R_21720001 RAL-235 977 chr2R 21753065 21753117 chr2R 21753567 21753622 roo 17 501 3.5 3.0 3.2 4.0 557 chr2R 21753065 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753622 intergenic not near genes chr2R_17_21750001 chr2R_21750001 RAL-235 978 chr2R 21774677 21774720 chr2R 21774771 21774808 8 96 1.0 4.5 2.8 2.1 131 chr2R 21774677 exon CG4021 + chr2R 21774742 3` UTR CG4021 + chr2R 21774808 3` UTR CG4021 + chr2R_8_21770001 chr2R_21770001 RAL-235 979 chr2R 21818867 21818905 chr2R 21818973 21819012 12 101 4.5 3.0 3.8 2.5 145 chr2R 21818867 intergenic not near genes chr2R 21818940 intergenic not near genes chr2R 21819012 intergenic not near genes chr2R_12_21815001 chr2R_21815001 RAL-235 980 chr2R 21870943 21870972 chr2R 21871034 21871049 8 92 1.0 2.0 1.5 3.2 106 chr2R 21870943 intergenic not near genes chr2R 21870996 intergenic not near genes chr2R 21871049 intergenic not near genes chr2R_8_21870001 chr2R_21870001 RAL-235 981 chr2R 21886129 21886159 chr2R 21886217 21886240 4 83 5.5 0.0 2.8 1.1 111 chr2R 21886129 intron Fili + chr2R 21886184 intron Fili + chr2R 21886240 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-235 982 chr2R 21941173 21941191 chr2R 21941341 21941348 4 172 2.0 4.0 3.0 1.0 175 chr2R 21941173 intron Fili + chr2R 21941260 intron Fili + chr2R 21941348 intron Fili + chr2R_4_21940001 chr2R_21940001 RAL-235 983 chr2R 21953353 21953400 chr2R 21953492 21953539 18 136 2.5 2.0 2.2 5.6 186 chr2R 21953353 intergenic CR43405 - chr2R 21953446 intergenic CR43405 - chr2R 21953539 intergenic CR43405 - chr2R_18_21950001 chr2R_21950001 RAL-235 984 chr2R 22003069 22003121 chr2R 22003175 22003214 5 100 1.5 1.5 1.5 2.0 145 chr2R 22003069 intron CG34370 - chr2R 22003142 intron CG34370 - chr2R 22003214 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-235 985 chr2R 22009766 22009804 chr2R 22009857 22009900 9 91 5.0 8.0 6.5 1.2 134 chr2R 22009766 intron CG34370 - chr2R 22009833 intron CG34370 - chr2R 22009900 intron CG34370 - chr2R_9_22005001 chr2R_22005001 RAL-235 986 chr2R 22029506 22029535 chr2R 22029604 22029633 11 98 3.5 0.5 2.0 3.7 127 chr2R 22029506 intron CG34370 - chr2R 22029570 intron CG34370 - chr2R 22029633 intron CG34370 - chr2R_11_22025001 chr2R_22025001 RAL-235 987 chr2R 22037757 22037801 chr2R 22037859 22037898 8 99 2.0 0.0 1.0 4.0 141 chr2R 22037757 intron CG34370 - chr2R 22037828 intron CG34370 - chr2R 22037898 intron CG34370 - chr2R_8_22035001 chr2R_22035001 RAL-235 988 chr2R 22124285 22124338 chr2R 22124394 22124441 24 107 4.0 4.5 4.2 4.6 156 chr2R 22124285 3` UTR mei-S332 + chr2R 22124363 3` UTR mei-S332 + chr2R 22124441 intergenic mei-S332 +,GM130 - chr2R_24_22120001 chr2R_22120001 RAL-235 989 chr2R 22182902 22182933 chr2R 22182999 22183028 9 101 2.5 3.0 2.8 2.4 126 chr2R 22182902 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22182965 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183028 intergenic MED16 +,CG11170 -,CG11275 + chr2R_9_22180001 chr2R_22180001 RAL-235 990 chr2R 22252384 22252427 chr2R 22252487 22252528 12 98 1.5 2.0 1.8 4.3 144 chr2R 22252384 intron dve + chr2R 22252456 intron dve + chr2R 22252528 intron dve + chr2R_12_22250001 chr2R_22250001 RAL-235 991 chr2R 22290060 22290068 chr2R 22290164 22290172 4 104 12.5 7.0 9.8 0.4 112 chr2R 22290060 intergenic not near genes chr2R 22290116 intergenic not near genes chr2R 22290172 intergenic not near genes chr2R_4_22290001 chr2R_22290001 RAL-235 992 chr2R 22290069 22290090 chr2R 22290162 22290187 7 97 10.0 7.0 8.5 0.7 118 chr2R 22290069 intergenic not near genes chr2R 22290128 intergenic not near genes chr2R 22290187 intergenic not near genes chr2R_7_22290001 chr2R_22290001 RAL-235 993 chr2R 22349684 22349714 chr2R 22351486 22351518 jockey 4 1800 4.5 6.5 5.5 0.6 1834 chr2R 22349684 intron Liprin-gamma - chr2R 22350601 intron Liprin-gamma - chr2R 22351518 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-235 994 chr2R 22360371 22360374 chr2R 22360824 22360827 jockey 4 453 7.5 3.0 5.2 0.6 456 chr2R 22360371 intron Liprin-gamma - chr2R 22360599 intron Liprin-gamma - chr2R 22360827 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-235 995 chr2R 22377803 22377812 chr2R 22377894 22377918 4 98 7.5 3.5 5.5 0.6 115 chr2R 22377803 3` UTR Rtf1 + chr2R 22377860 3` UTR Rtf1 + chr2R 22377918 3` UTR Rtf1 + chr2R_4_22375001 chr2R_22375001 RAL-235 996 chr2R 22460374 22460403 chr2R 22460462 22460500 18 95 6.0 3.0 4.5 3.3 126 chr2R 22460374 intron CG10384 + chr2R 22460437 intron CG10384 + chr2R 22460500 intron CG10384 + chr2R_18_22460001 chr2R_22460001 RAL-235 997 chr2R 22503781 22503807 chr2R 22503897 22503923 7 113 2.0 5.0 3.5 1.6 142 chr2R 22503781 intron px - chr2R 22503852 intron px - chr2R 22503923 intron px - chr2R_7_22500001 chr2R_22500001 RAL-235 998 chr2R 22523044 22523072 chr2R 22523136 22523141 6 90 6.5 3.0 4.8 1.0 97 chr2R 22523044 intron px - chr2R 22523092 intron px - chr2R 22523141 intron px - chr2R_6_22520001 chr2R_22520001 RAL-235 999 chr2R 22525729 22525786 chr2R 22529304 22529306 jockey 9 3568 4.5 2.0 3.2 2.1 3577 chr2R 22525729 intron px - chr2R 22527518 intron px - chr2R 22529306 intron px - chr2R_9_22525001 chr2R_22525001 RAL-235 1000 chr2R 22580418 22580443 chr2R 22586582 22586605 diver 4 6164 6.5 4.5 5.5 0.6 6187 chr2R 22580418 intron dnr1 - chr2R 22583512 intron dnr1 - chr2R 22586605 intron dnr1 - chr2R_4_22580001 chr2R_22580001 RAL-235 1001 chr2R 22623444 22623485 chr2R 22623593 22623639 15 151 1.5 5.0 3.2 3.6 195 chr2R 22623444 intron CG33143 + chr2R 22623542 intron CG33143 + chr2R 22623639 intron CG33143 + chr2R_15_22620001 chr2R_22620001 RAL-235 1002 chr2R 22664684 22664710 chr2R 22664761 22664804 6 93 0.5 3.5 2.0 2.0 120 chr2R 22664684 intergenic CG4250 + chr2R 22664744 intergenic CG4250 + chr2R 22664804 intergenic CG4250 + chr2R_6_22660001 chr2R_22660001 RAL-235 1003 chr2R 22666729 22666784 chr2R 22666825 22666878 15 95 1.0 0.0 0.5 10.0 149 chr2R 22666729 5` UTR CR42868 + chr2R 22666804 intergenic CR42868 +,CR45269 -,CG30273 + chr2R 22666878 intergenic CR42868 +,CR45269 -,CG30273 + chr2R_15_22665001 chr2R_22665001 RAL-235 1004 chr2R 22756639 22756651 chr2R 22756736 22756749 4 98 1.5 2.0 1.8 1.4 110 chr2R 22756639 intron,intron CG42260 -,CR30267 + chr2R 22756694 intron,intron CG42260 -,CR30267 + chr2R 22756749 intron,intron CG42260 -,CR30267 + chr2R_4_22755001 chr2R_22755001 RAL-235 1005 chr2R 22774948 22774996 chr2R 22775386 22775435 jockey 10 436 3.5 6.0 4.8 1.7 487 chr2R 22774948 intron CG42260 - chr2R 22775192 intron CG42260 - chr2R 22775435 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-235 1006 chr2R 22785712 22785756 chr2R 22785810 22785854 16 98 3.5 3.5 3.5 3.6 142 chr2R 22785712 intron CG42260 - chr2R 22785783 intron CG42260 - chr2R 22785854 intron CG42260 - chr2R_16_22785001 chr2R_22785001 RAL-235 1007 chr2R 22787581 22787591 chr2R 22787734 22787743 4 152 1.5 4.0 2.8 1.1 162 chr2R 22787581 intron CG42260 - chr2R 22787662 intron CG42260 - chr2R 22787743 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-235 1008 chr2R 22823159 22823190 chr2R 22823280 22823315 10 125 4.0 3.5 3.8 2.1 156 chr2R 22823159 exon CG42284 + chr2R 22823237 intron CG42284 + chr2R 22823315 intron CG42284 + chr2R_10_22820001 chr2R_22820001 RAL-235 1009 chr2R 22951699 22951866 chr2R 22951854 22951970 6 129 0.0 0.0 0.0 6.0 271 chr2R 22951699 3` UTR CR32835 - chr2R 22951834 3` UTR CR32835 - chr2R 22951970 intron CR32835 - chr2R_6_22950001 chr2R_22950001 RAL-235 1010 chr2R 22988302 22988320 chr2R 22988403 22988421 5 99 4.5 3.5 4.0 1.0 119 chr2R 22988302 intron twi + chr2R 22988362 intron twi + chr2R 22988421 intron twi + chr2R_5_22985001 chr2R_22985001 RAL-235 1011 chr2R 23029593 23029642 chr2R 23029690 23029713 5 87 2.0 4.5 3.2 1.2 120 chr2R 23029593 intron,intron twi +,CG42741 - chr2R 23029653 intron,intron twi +,CG42741 - chr2R 23029713 intron,intron twi +,CG42741 - chr2R_5_23025001 chr2R_23025001 RAL-235 1012 chr2R 23045320 23045359 chr2R 23045554 23045580 14 229 2.5 6.5 4.5 2.5 260 chr2R 23045320 intron twi + chr2R 23045450 intron twi + chr2R 23045580 intron twi + chr2R_14_23045001 chr2R_23045001 RAL-235 1013 chr2R 23052636 23052684 chr2R 23052732 23052757 15 92 6.0 2.5 4.2 2.9 121 chr2R 23052636 intergenic not near genes chr2R 23052696 intergenic not near genes chr2R 23052757 intergenic not near genes chr2R_15_23050001 chr2R_23050001 RAL-235 1014 chr2R 23061773 23061791 chr2R 23061866 23061891 9 101 3.0 3.5 3.2 2.1 118 chr2R 23061773 3` UTR l(2)06496 - chr2R 23061832 3` UTR l(2)06496 - chr2R 23061891 3` UTR l(2)06496 - chr2R_9_23060001 chr2R_23060001 RAL-235 1015 chr2R 23157355 23157397 chr2R 23157459 23157467 4 90 2.0 0.0 1.0 2.0 112 chr2R 23157355 intron CG9899 + chr2R 23157411 intron CG9899 + chr2R 23157467 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-235 1016 chr2R 23158344 23158353 chr2R 23158425 23158445 4 86 4.0 5.5 4.8 0.7 101 chr2R 23158344 intron CG9899 + chr2R 23158394 intron CG9899 + chr2R 23158445 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-235 1017 chr2R 23188537 23188587 chr2R 23188635 23188685 16 95 5.5 3.5 4.5 2.9 148 chr2R 23188537 intron CG34371 - chr2R 23188611 intron CG34371 - chr2R 23188685 intron CG34371 - chr2R_16_23185001 chr2R_23185001 RAL-235 1018 chr2R 23202679 23202725 chr2R 23202783 23202821 11 104 3.0 6.0 4.5 2.0 142 chr2R 23202679 intron CG34371 - chr2R 23202750 intron CG34371 - chr2R 23202821 intron CG34371 - chr2R_11_23200001 chr2R_23200001 RAL-235 1019 chr2R 23236796 23236853 chr2R 23236914 23236967 7 108 0.0 0.0 0.0 7.0 171 chr2R 23236796 intergenic not near genes chr2R 23236882 intergenic not near genes chr2R 23236967 intergenic not near genes chr2R_7_23235001 chr2R_23235001 RAL-235 1020 chr2R 23402590 23402642 chr2R 23407686 23407727 flea 14 5092 4.5 9.0 6.8 1.8 5137 chr2R 23402590 intergenic CG3520 - chr2R 23405158 intergenic not near genes chr2R 23407727 intergenic not near genes chr2R_14_23405001 chr2R_23405001 RAL-235 1021 chr2R 23437217 23437242 chr2R 23437306 23437316 5 87 0.5 2.5 1.5 2.0 99 chr2R 23437217 intergenic not near genes chr2R 23437266 intergenic not near genes chr2R 23437316 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-235 1022 chr2R 23563888 23563917 chr2R 23563974 23564017 7 94 6.0 5.5 5.8 1.0 129 chr2R 23563888 3` UTR Pi3K59F + chr2R 23563952 3` UTR Pi3K59F + chr2R 23564017 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_7_23560001 chr2R_23560001 RAL-235 1023 chr2R 23654513 23654517 chr2R 23654578 23654617 4 90 1.5 3.5 2.5 1.1 104 chr2R 23654513 3` UTR retn + chr2R 23654565 3` UTR retn + chr2R 23654617 3` UTR retn + chr2R_4_23650001 chr2R_23650001 RAL-235 1024 chr2R 23679459 23679476 chr2R 23679552 23679557 8 92 5.0 4.5 4.8 1.4 98 chr2R 23679459 3` UTR Pde8 + chr2R 23679508 3` UTR Pde8 + chr2R 23679557 3` UTR Pde8 + chr2R_8_23675001 chr2R_23675001 RAL-235 1025 chr2R 23745394 23745433 chr2R 23745490 23745529 15 94 3.5 7.5 5.5 2.3 135 chr2R 23745394 intron egl - chr2R 23745462 intron egl - chr2R 23745529 intron egl - chr2R_15_23745001 chr2R_23745001 RAL-235 1026 chr2R 23768541 23768567 chr2R 23768638 23768650 7 97 4.0 3.5 3.8 1.5 109 chr2R 23768541 intron CG9850 - chr2R 23768596 intron CG9850 - chr2R 23768650 intron CG9850 - chr2R_7_23765001 chr2R_23765001 RAL-235 1027 chr2R 23771291 23771309 chr2R 23771389 23771407 6 96 3.0 1.0 2.0 2.0 116 chr2R 23771291 intron CG9850 - chr2R 23771349 intron CG9850 - chr2R 23771407 intron CG9850 - chr2R_6_23770001 chr2R_23770001 RAL-235 1028 chr2R 23784451 23784500 chr2R 23784549 23784598 20 93 6.5 3.5 5.0 3.3 147 chr2R 23784451 intron CG9850 - chr2R 23784524 intron CG9850 - chr2R 23784598 intron CG9850 - chr2R_20_23780001 chr2R_23780001 RAL-235 1029 chr2R 23986497 23986547 chr2R 23986597 23986647 9 96 3.0 7.5 5.2 1.5 150 chr2R 23986497 intron Phm - chr2R 23986572 intron Phm - chr2R 23986647 intron,5` UTR Phm -,CG30178 + chr2R_9_23985001 chr2R_23985001 RAL-235 1030 chr2R 24031363 24031409 chr2R 24031465 24031508 17 99 5.0 8.5 6.8 2.2 145 chr2R 24031363 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031508 intergenic Chi -,CG30172 - chr2R_17_24030001 chr2R_24030001 RAL-235 1031 chr2R 24077910 24077959 chr2R 24078006 24078053 12 93 1.5 2.5 2.0 4.0 143 chr2R 24077910 3` UTR Mlp60A + chr2R 24077982 3` UTR Mlp60A + chr2R 24078053 3` UTR Mlp60A + chr2R_12_24075001 chr2R_24075001 RAL-235 1032 chr2R 24177215 24177266 chr2R 24184720 24184760 412 14 7502 5.0 4.5 4.8 2.4 7545 chr2R 24177215 3` UTR Nop60B + chr2R 24180988 intron Nop60B + chr2R 24184760 3` UTR Nop60B + chr2R_14_24180001 chr2R_24180001 RAL-235 1033 chr2R 24278313 24278351 chr2R 24278406 24278418 6 92 0.0 6.5 3.2 1.4 105 chr2R 24278313 intron nvy + chr2R 24278366 intron nvy + chr2R 24278418 intron nvy + chr2R_6_24275001 chr2R_24275001 RAL-235 1034 chr2R 24313367 24313398 chr2R 24313470 24313497 8 101 3.0 3.5 3.2 1.9 130 chr2R 24313367 intergenic betaTub60D + chr2R 24313432 intergenic betaTub60D + chr2R 24313497 intergenic betaTub60D + chr2R_8_24310001 chr2R_24310001 RAL-235 1035 chr2R 24353407 24353460 chr2R 24361789 24361822 roo 19 8376 7.5 2.5 5.0 3.2 8415 chr2R 24353407 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_19_24355001 chr2R_24355001 RAL-235 1036 chr2R 24430920 24430949 chr2R 24431010 24431049 8 100 0.0 6.5 3.2 1.9 129 chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R 24430984 intergenic CG15873 -,Pgam5-2 - chr2R 24431049 intergenic Pgam5-2 -,CG15873 - chr2R_8_24430001 chr2R_24430001 RAL-235 1037 chr2R 24548904 24548929 chr2R 24549008 24549012 5 98 6.0 1.5 3.8 1.0 108 chr2R 24548904 intron,intron CG4622 -,ITP + chr2R 24548958 intron,intron CG4622 -,ITP + chr2R 24549012 intron,intron CG4622 -,ITP + chr2R_5_24545001 chr2R_24545001 RAL-235 1038 chr2R 24548932 24548947 chr2R 24549006 24549050 4 95 4.5 1.0 2.8 1.1 118 chr2R 24548932 intron,intron CG4622 -,ITP + chr2R 24548991 intron,intron CG4622 -,ITP + chr2R 24549050 intron,intron CG4622 -,ITP + chr2R_4_24545001 chr2R_24545001 RAL-235 1039 chr2R 24636886 24636911 chr2R 24636992 24637017 5 105 6.0 0.0 3.0 1.2 131 chr2R 24636886 intron CG13594 - chr2R 24636952 intron CG13594 - chr2R 24637017 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-235 1040 chr2R 24647553 24647610 chr2R 24655144 24655171 412 4 7581 0.0 2.0 1.0 2.0 7618 chr2R 24647553 intergenic not near genes chr2R 24651362 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-235 1041 chr2R 24727889 24727917 chr2R 24735398 24735437 mdg1 5 7510 0.5 2.5 1.5 2.0 7548 chr2R 24727889 intron Mid1 - chr2R 24731663 intron Mid1 - chr2R 24735437 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-235 1042 chr2R 24737134 24737175 chr2R 24737274 24737298 5 126 4.0 2.5 3.2 1.2 164 chr2R 24737134 intergenic Mid1 - chr2R 24737216 intergenic not near genes chr2R 24737298 intergenic not near genes chr2R_5_24735001 chr2R_24735001 RAL-235 1043 chr2R 24859844 24859866 chr2R 24859935 24859966 4 96 1.5 1.0 1.2 1.8 122 chr2R 24859844 5` UTR CR44829 + chr2R 24859905 5` UTR CR44829 + chr2R 24859966 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-235 1044 chr2R 24884033 24884078 chr2R 24884133 24884159 24 98 6.0 5.0 5.5 3.7 126 chr2R 24884033 intron NKAIN + chr2R 24884096 intron NKAIN + chr2R 24884159 intron NKAIN + chr2R_24_24880001 chr2R_24880001 RAL-235 1045 chr2R 25004881 25004906 chr2R 25004979 25004996 4 96 5.0 12.5 8.8 0.4 115 chr2R 25004881 intron zip - chr2R 25004938 intron zip - chr2R 25004996 intron zip - chr2R_4_25000001 chr2R_25000001 RAL-235 1046 chr2R 25004908 25004916 chr2R 25004967 25004987 7 78 4.0 8.5 6.2 1.0 79 chr2R 25004908 intron zip - chr2R 25004948 intron zip - chr2R 25004987 intron zip - chr2R_7_25000001 chr2R_25000001 RAL-235 1047 chr2R 25014544 25014561 chr2R 25014629 25014657 5 90 7.0 6.0 6.5 0.7 113 chr2R 25014544 intron uzip + chr2R 25014600 intron uzip + chr2R 25014657 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-235 1048 chr2R 25018337 25018374 chr2R 25018443 25018474 8 111 2.5 4.5 3.5 1.8 137 chr2R 25018337 intron uzip + chr2R 25018406 intron uzip + chr2R 25018474 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-235 1049 chr2R 25022633 25022669 chr2R 25022724 25022773 14 100 5.0 4.5 4.8 2.4 140 chr2R 25022633 intron uzip + chr2R 25022703 intron uzip + chr2R 25022773 intron uzip + chr2R_14_25020001 chr2R_25020001 RAL-235 1050 chr2R 25061996 25062010 chr2R 25062082 25062109 5 95 1.0 7.0 4.0 1.0 113 chr2R 25061996 5` UTR gsb + chr2R 25062052 5` UTR gsb + chr2R 25062109 5` UTR gsb + chr2R_5_25060001 chr2R_25060001 RAL-235 1051 chr2R 25080298 25080334 chr2R 25080688 25080710 10 387 4.5 5.0 4.8 1.7 412 chr2R 25080298 intron gol - chr2R 25080504 intron gol - chr2R 25080710 intron gol - chr2R_10_25080001 chr2R_25080001 RAL-235 1052 chr2R 25081626 25081636 chr2R 25082712 25082745 5 1099 3.5 7.5 5.5 0.8 1119 chr2R 25081626 intron gol - chr2R 25082186 intron gol - chr2R 25082745 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-235 1053 chr2R 25101265 25101305 chr2R 25101376 25101415 20 114 2.0 2.5 2.2 6.2 150 chr2R 25101265 intron lov - chr2R 25101340 intron lov - chr2R 25101415 intron lov - chr2R_20_25100001 chr2R_25100001 RAL-235 1054 chr2R 25104756 25104807 chr2R 25104901 25104930 11 134 2.0 2.0 2.0 3.7 174 chr2R 25104756 intron lov - chr2R 25104843 intron lov - chr2R 25104930 intron lov - chr2R_11_25100001 chr2R_25100001 RAL-235 1055 chr2R 25122952 25122992 chr2R 25123042 25123087 18 93 6.0 4.5 5.2 2.9 135 chr2R 25122952 intron lov - chr2R 25123020 intron lov - chr2R 25123087 intron lov - chr2R_18_25120001 chr2R_25120001 RAL-235 1056 chr2R 25141639 25141681 chr2R 25159339 25159391 roo 15 17706 2.5 5.5 4.0 3.0 17752 chr2R 25141639 intergenic not near genes chr2R 25150515 intergenic not near genes chr2R 25159391 intergenic not near genes chr2R_15_25150001 chr2R_25150001 RAL-235 1057 chr2R 25180756 25180780 chr2R 25180843 25180877 7 95 6.0 3.0 4.5 1.3 121 chr2R 25180756 intergenic not near genes chr2R 25180816 intergenic not near genes chr2R 25180877 intergenic not near genes chr2R_7_25180001 chr2R_25180001 RAL-235 1058 chr2R 25181095 25181131 chr2R 25181212 25181248 14 114 8.0 8.5 8.2 1.5 153 chr2R 25181095 intergenic not near genes chr2R 25181172 intergenic not near genes chr2R 25181248 intergenic not near genes chr2R_14_25180001 chr2R_25180001 RAL-235 1059 chr2R 25193324 25193361 chr2R 25193486 25193524 4 160 3.5 0.5 2.0 1.3 200 chr2R 25193324 intron CG9380 - chr2R 25193424 intron CG9380 - chr2R 25193524 intron CG9380 - chr2R_4_25190001 chr2R_25190001 RAL-235 1060 chr2R 25236014 25236045 chr2R 25236145 25236176 14 128 3.0 3.5 3.2 3.3 162 chr2R 25236014 intron CG9380 - chr2R 25236095 intron CG9380 - chr2R 25236176 intron CG9380 - chr2R_14_25235001 chr2R_25235001 RAL-235 1061 chr3L 76112 76120 chr3L 76292 76336 4 194 20.5 25.0 22.8 0.2 224 chr3L 76112 intergenic not near genes chr3L 76224 intergenic not near genes chr3L 76336 intergenic not near genes chr3L_4_75001 chr3L_75001 RAL-235 1062 chr3L 110192 110242 chr3L 119379 119429 roo 10 9183 5.0 3.5 4.2 1.9 9237 chr3L 110192 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119429 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-235 1063 chr3L 159289 159337 chr3L 159404 159451 19 108 5.5 5.5 5.5 2.9 162 chr3L 159289 intron p130CAS + chr3L 159370 intron p130CAS + chr3L 159451 intron p130CAS + chr3L_19_155001 chr3L_155001 RAL-235 1064 chr3L 161690 161719 chr3L 162536 162565 7 842 1.5 4.0 2.8 1.8 875 chr3L 161690 intron p130CAS + chr3L 162128 intron p130CAS + chr3L 162565 intron p130CAS + chr3L_7_160001 chr3L_160001 RAL-235 1065 chr3L 375232 375276 chr3L 375336 375380 4 102 0.0 6.0 3.0 1.0 148 chr3L 375232 intron trh - chr3L 375306 intron trh - chr3L 375380 intron trh - chr3L_4_375001 chr3L_375001 RAL-235 1066 chr3L 402380 402391 chr3L 402478 402489 6 97 0.0 4.5 2.2 1.9 109 chr3L 402380 intergenic not near genes chr3L 402434 intergenic not near genes chr3L 402489 intergenic not near genes chr3L_6_400001 chr3L_400001 RAL-235 1067 chr3L 402396 402412 chr3L 402474 402510 7 93 0.0 4.0 2.0 2.3 114 chr3L 402396 intergenic not near genes chr3L 402453 intergenic not near genes chr3L 402510 intergenic not near genes chr3L_7_400001 chr3L_400001 RAL-235 1068 chr3L 402667 402717 chr3L 409740 409789 297 8 7065 2.5 4.0 3.2 1.9 7122 chr3L 402667 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409789 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-235 1069 chr3L 468278 468322 chr3L 468392 468436 6 113 3.0 2.0 2.5 1.7 158 chr3L 468278 intron klar - chr3L 468357 intron klar - chr3L 468436 intron klar - chr3L_6_465001 chr3L_465001 RAL-235 1070 chr3L 470906 470950 chr3L 471153 471170 4 240 0.5 4.0 2.2 1.2 264 chr3L 470906 intron klar - chr3L 471038 intron klar - chr3L 471170 intron klar - chr3L_4_470001 chr3L_470001 RAL-235 1071 chr3L 481164 481167 chr3L 481251 481261 4 92 5.0 6.5 5.8 0.6 97 chr3L 481164 intron klar - chr3L 481212 intron klar - chr3L 481261 intron klar - chr3L_4_480001 chr3L_480001 RAL-235 1072 chr3L 481171 481181 chr3L 481244 481291 6 94 4.5 5.5 5.0 1.0 120 chr3L 481171 intron klar - chr3L 481231 intron klar - chr3L 481291 intron klar - chr3L_6_480001 chr3L_480001 RAL-235 1073 chr3L 514928 514947 chr3L 515030 515049 7 97 9.0 8.0 8.5 0.7 121 chr3L 514928 intron klar - chr3L 514988 intron klar - chr3L 515049 intron klar - chr3L_7_510001 chr3L_510001 RAL-235 1074 chr3L 514948 514963 chr3L 515025 515065 6 93 6.0 7.5 6.8 0.8 117 chr3L 514948 intron klar - chr3L 515006 intron klar - chr3L 515065 intron klar - chr3L_6_515001 chr3L_515001 RAL-235 1075 chr3L 524765 524775 chr3L 524862 524877 10 100 0.5 9.0 4.8 1.7 112 chr3L 524765 intron klar - chr3L 524821 intron klar - chr3L 524877 intron klar - chr3L_10_520001 chr3L_520001 RAL-235 1076 chr3L 559510 559550 chr3L 559919 559935 5 402 2.5 4.5 3.5 1.1 425 chr3L 559510 intron hipk + chr3L 559722 intron hipk + chr3L 559935 intron hipk + chr3L_5_555001 chr3L_555001 RAL-235 1077 chr3L 732814 732846 chr3L 733056 733088 8 231 3.0 4.0 3.5 1.8 274 chr3L 732814 intergenic not near genes chr3L 732951 intergenic not near genes chr3L 733088 intergenic not near genes chr3L_8_730001 chr3L_730001 RAL-235 1078 chr3L 789904 789910 chr3L 790409 790415 roo 6 505 10.0 2.0 6.0 0.9 511 chr3L 789904 intergenic not near genes chr3L 790160 intergenic not near genes chr3L 790415 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-235 1079 chr3L 789911 789947 chr3L 790406 790413 roo 11 494 5.5 2.0 3.8 2.3 502 chr3L 789911 intergenic not near genes chr3L 790162 intergenic not near genes chr3L 790413 intergenic not near genes chr3L_11_790001 chr3L_790001 RAL-235 1080 chr3L 875638 875692 chr3L 875745 875782 12 102 4.0 3.5 3.8 2.5 144 chr3L 875638 intron CG32479 + chr3L 875710 intron CG32479 + chr3L 875782 intron CG32479 + chr3L_12_875001 chr3L_875001 RAL-235 1081 chr3L 899995 900017 chr3L 900093 900121 9 101 0.5 8.5 4.5 1.6 126 chr3L 899995 intergenic not near genes chr3L 900058 intergenic not near genes chr3L 900121 intergenic not near genes chr3L_9_900001 chr3L_900001 RAL-235 1082 chr3L 925180 925208 chr3L 932602 932631 mdg1 9 7440 1.0 3.0 2.0 3.0 7451 chr3L 925180 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932631 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-235 1083 chr3L 933906 933939 chr3L 934014 934060 11 118 4.0 5.5 4.8 1.9 154 chr3L 933906 intron Glut1 + chr3L 933983 intron Glut1 + chr3L 934060 intron Glut1 + chr3L_11_930001 chr3L_930001 RAL-235 1084 chr3L 939754 939795 chr3L 940892 940927 jockey 12 1137 2.5 6.0 4.2 2.3 1173 chr3L 939754 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940927 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-235 1085 chr3L 958293 958347 chr3L 958397 958449 20 95 3.0 4.0 3.5 4.4 156 chr3L 958293 intron Glut1 + chr3L 958371 intron Glut1 + chr3L 958449 intron Glut1 + chr3L_20_955001 chr3L_955001 RAL-235 1086 chr3L 960997 961044 chr3L 961110 961157 10 110 2.0 3.5 2.8 2.6 160 chr3L 960997 intron Glut1 + chr3L 961077 intron Glut1 + chr3L 961157 intron Glut1 + chr3L_10_960001 chr3L_960001 RAL-235 1087 chr3L 1000247 1000300 chr3L 1000350 1000363 11 93 1.5 4.0 2.8 2.9 116 chr3L 1000247 intron trio - chr3L 1000305 intron trio - chr3L 1000363 intron trio - chr3L_11_1000001 chr3L_1000001 RAL-235 1088 chr3L 1109619 1109662 chr3L 1109725 1109770 9 104 6.0 3.5 4.8 1.6 151 chr3L 1109619 intergenic not near genes chr3L 1109694 intergenic not near genes chr3L 1109770 intergenic not near genes chr3L_9_1105001 chr3L_1105001 RAL-235 1089 chr3L 1116669 1116710 chr3L 1116773 1116779 8 100 1.0 2.5 1.8 2.9 110 chr3L 1116669 intergenic not near genes chr3L 1116724 intergenic not near genes chr3L 1116779 intergenic not near genes chr3L_8_1115001 chr3L_1115001 RAL-235 1090 chr3L 1154133 1154162 chr3L 1163287 1163331 roo 7 9157 3.5 3.0 3.2 1.7 9198 chr3L 1154133 intron bab2 - chr3L 1158732 intron bab2 - chr3L 1163331 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-235 1091 chr3L 1194524 1194545 chr3L 1194639 1194660 4 114 2.5 11.5 7.0 0.5 136 chr3L 1194524 intergenic LysX - chr3L 1194592 intergenic LysX - chr3L 1194660 intergenic LysX - chr3L_4_1190001 chr3L_1190001 RAL-235 1092 chr3L 1214195 1214199 chr3L 1214292 1214296 5 96 7.5 0.5 4.0 1.0 101 chr3L 1214195 intron mwh + chr3L 1214246 intron mwh + chr3L 1214296 intron mwh + chr3L_5_1210001 chr3L_1210001 RAL-235 1093 chr3L 1214201 1214214 chr3L 1214289 1214302 7 93 7.5 1.5 4.5 1.3 101 chr3L 1214201 intron mwh + chr3L 1214252 intron mwh + chr3L 1214302 intron mwh + chr3L_7_1210001 chr3L_1210001 RAL-235 1094 chr3L 1219584 1219625 chr3L 1227332 1227372 412 6 7746 1.5 0.5 1.0 3.0 7788 chr3L 1219584 intron mwh + chr3L 1223478 intron mwh + chr3L 1227372 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-235 1095 chr3L 1260133 1260163 chr3L 1260233 1260257 5 88 1.0 4.0 2.5 1.4 124 chr3L 1260133 intron CG9134 + chr3L 1260195 intron CG9134 + chr3L 1260257 intron CG9134 + chr3L_5_1260001 chr3L_1260001 RAL-235 1096 chr3L 1324617 1324657 chr3L 1324705 1324755 9 89 2.0 2.5 2.2 2.8 138 chr3L 1324617 intron Myo61F + chr3L 1324686 intron Myo61F + chr3L 1324755 intron Myo61F + chr3L_9_1320001 chr3L_1320001 RAL-235 1097 chr3L 1374417 1374427 chr3L 1374514 1374524 5 95 13.0 7.5 10.2 0.4 107 chr3L 1374417 intron,intron Ptp61F -,ru + chr3L 1374470 intron,intron Ptp61F -,ru + chr3L 1374524 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-235 1098 chr3L 1505976 1506031 chr3L 1513593 1513648 17.6 15 7617 9.0 4.0 6.5 2.0 7672 chr3L 1505976 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513648 intron,intron Psa +,cue - chr3L_15_1505001 chr3L_1505001 RAL-235 1099 chr3L 1585907 1585938 chr3L 1586008 1586041 14 99 0.5 0.0 0.2 11.7 134 chr3L 1585907 intron CG13917 + chr3L 1585974 intron CG13917 + chr3L 1586041 intron CG13917 + chr3L_14_1585001 chr3L_1585001 RAL-235 1100 chr3L 1639212 1639238 chr3L 1639410 1639439 8 195 1.0 4.0 2.5 2.3 227 chr3L 1639212 5` UTR metl - chr3L 1639326 intergenic metl -,Bgb + chr3L 1639439 intergenic metl -,Bgb + chr3L_8_1635001 chr3L_1635001 RAL-235 1101 chr3L 1848641 1848668 chr3L 1848730 1848766 6 95 3.0 5.0 4.0 1.2 125 chr3L 1848641 intergenic not near genes chr3L 1848704 intergenic not near genes chr3L 1848766 intergenic not near genes chr3L_6_1845001 chr3L_1845001 RAL-235 1102 chr3L 1853026 1853044 chr3L 1853130 1853138 4 100 2.5 5.0 3.8 0.8 112 chr3L 1853026 intron CG13936 - chr3L 1853082 intron CG13936 - chr3L 1853138 intron CG13936 - chr3L_4_1850001 chr3L_1850001 RAL-235 1103 chr3L 2016816 2016865 chr3L 2016922 2016970 15 103 6.5 3.5 5.0 2.5 154 chr3L 2016816 intergenic not near genes chr3L 2016893 intergenic not near genes chr3L 2016970 intergenic not near genes chr3L_15_2015001 chr3L_2015001 RAL-235 1104 chr3L 2108094 2108104 chr3L 2108199 2108209 4 104 0.0 0.5 0.2 3.3 115 chr3L 2108094 intron sls - chr3L 2108152 intron sls - chr3L 2108209 intron sls - chr3L_4_2105001 chr3L_2105001 RAL-235 1105 chr3L 2108234 2108278 chr3L 2113453 2113502 copia 5 5222 1.0 6.0 3.5 1.1 5268 chr3L 2108234 intron sls - chr3L 2110868 intron sls - chr3L 2113502 intron sls - chr3L_5_2110001 chr3L_2110001 RAL-235 1106 chr3L 2146970 2147016 chr3L 2147066 2147078 8 86 3.5 5.5 4.5 1.5 108 chr3L 2146970 intron zormin - chr3L 2147024 intron zormin - chr3L 2147078 intron zormin - chr3L_8_2145001 chr3L_2145001 RAL-235 1107 chr3L 2199797 2199816 chr3L 2199889 2199912 4 94 0.0 6.5 3.2 1.0 115 chr3L 2199797 intergenic not near genes chr3L 2199854 intergenic not near genes chr3L 2199912 intergenic not near genes chr3L_4_2195001 chr3L_2195001 RAL-235 1108 chr3L 2208916 2208950 chr3L 2210972 2211008 6 2060 32.5 5.5 19.0 0.3 2092 chr3L 2208916 intergenic not near genes chr3L 2209962 intergenic not near genes chr3L 2211008 3` UTR CG15878 - chr3L_6_2205001 chr3L_2205001 RAL-235 1109 chr3L 2277955 2278011 chr3L 2278171 2278227 22 210 5.0 3.0 4.0 4.4 272 chr3L 2277955 3` UTR yellow-g2 + chr3L 2278091 intergenic yellow-g2 + chr3L 2278227 intergenic yellow-g2 + chr3L_22_2275001 chr3L_2275001 RAL-235 1110 chr3L 2290266 2290276 chr3L 2290329 2290377 5 83 0.0 2.5 1.2 2.3 111 chr3L 2290266 intron MsR2 + chr3L 2290322 intron MsR2 + chr3L 2290377 intron MsR2 + chr3L_5_2290001 chr3L_2290001 RAL-235 1111 chr3L 2307986 2308035 chr3L 2308112 2308161 14 117 2.0 5.5 3.8 2.9 175 chr3L 2307986 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308161 intergenic not near genes chr3L_14_2305001 chr3L_2305001 RAL-235 1112 chr3L 2317547 2317592 chr3L 2319381 2319426 17 1834 3.5 3.0 3.2 4.0 1879 chr3L 2317547 3` UTR CR45427 - chr3L 2318486 intergenic not near genes chr3L 2319426 3` UTR CR45426 - chr3L_17_2315001 chr3L_2315001 RAL-235 1113 chr3L 2332676 2332719 chr3L 2332849 2332851 8 164 3.5 4.5 4.0 1.6 175 chr3L 2332676 intron MsR1 + chr3L 2332764 intron MsR1 + chr3L 2332851 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-235 1114 chr3L 2447505 2447532 chr3L 2456669 2456703 roo 6 9165 3.5 4.0 3.8 1.2 9198 chr3L 2447505 intron CG45186 + chr3L 2452104 intron CG45186 + chr3L 2456703 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-235 1115 chr3L 2478878 2479037 chr3L 2478962 2479154 15 103 2.5 3.0 2.8 3.9 276 chr3L 2478878 intron CG45186 + chr3L 2479016 intron CG45186 + chr3L 2479154 intron CG45186 + chr3L_15_2475001 chr3L_2475001 RAL-235 1116 chr3L 2479472 2479483 chr3L 2479573 2479586 4 106 0.0 11.0 5.5 0.6 114 chr3L 2479472 intron CG45186 + chr3L 2479529 intron CG45186 + chr3L 2479586 intron CG45186 + chr3L_4_2475001 chr3L_2475001 RAL-235 1117 chr3L 2485567 2485619 chr3L 2485665 2485675 5 81 2.0 0.5 1.2 2.3 108 chr3L 2485567 intron CG45186 + chr3L 2485621 intron CG45186 + chr3L 2485675 intron CG45186 + chr3L_5_2485001 chr3L_2485001 RAL-235 1118 chr3L 2493802 2493849 chr3L 2493900 2493957 9 96 2.5 0.0 1.2 4.1 155 chr3L 2493802 intron CG45186 + chr3L 2493880 intron CG45186 + chr3L 2493957 intron CG45186 + chr3L_9_2490001 chr3L_2490001 RAL-235 1119 chr3L 2498901 2498955 chr3L 2498999 2499053 14 95 4.0 4.0 4.0 2.8 152 chr3L 2498901 3` UTR CG45186 + chr3L 2498977 3` UTR CG45186 + chr3L 2499053 3` UTR CG45186 + chr3L_14_2495001 chr3L_2495001 RAL-235 1120 chr3L 2500751 2500759 chr3L 2500848 2500856 4 97 14.0 6.0 10.0 0.4 105 chr3L 2500751 intron CG16758 - chr3L 2500804 intron CG16758 - chr3L 2500856 intron CG16758 - chr3L_4_2500001 chr3L_2500001 RAL-235 1121 chr3L 2515401 2515416 chr3L 2515503 2515512 4 100 3.5 9.5 6.5 0.5 111 chr3L 2515401 intron Spn - chr3L 2515456 intron Spn - chr3L 2515512 intron Spn - chr3L_4_2515001 chr3L_2515001 RAL-235 1122 chr3L 2533669 2533681 chr3L 2533732 2533753 6 73 2.5 4.5 3.5 1.3 84 chr3L 2533669 intron Spn - chr3L 2533711 intron Spn - chr3L 2533753 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-235 1123 chr3L 2548235 2548285 chr3L 2548344 2548391 10 103 4.0 3.0 3.5 2.2 156 chr3L 2548235 intron Spn - chr3L 2548313 intron Spn - chr3L 2548391 intron Spn - chr3L_10_2545001 chr3L_2545001 RAL-235 1124 chr3L 2554040 2554083 chr3L 2554138 2554164 4 92 2.5 0.0 1.2 1.8 124 chr3L 2554040 intron Spn - chr3L 2554102 5` UTR Spn - chr3L 2554164 5` UTR Spn - chr3L_4_2550001 chr3L_2550001 RAL-235 1125 chr3L 2623395 2623405 chr3L 2623461 2623494 5 93 3.0 2.0 2.5 1.4 99 chr3L 2623395 intron Pxn - chr3L 2623444 intron Pxn - chr3L 2623494 intron Pxn - chr3L_5_2620001 chr3L_2620001 RAL-235 1126 chr3L 2631059 2631092 chr3L 2631176 2631204 9 120 2.0 2.0 2.0 3.0 145 chr3L 2631059 intergenic CR45660 - chr3L 2631132 intergenic CR45660 - chr3L 2631204 intergenic not near genes chr3L_9_2630001 chr3L_2630001 RAL-235 1127 chr3L 2683924 2683967 chr3L 2684020 2684063 14 92 6.5 3.0 4.8 2.4 139 chr3L 2683924 intron Fife - chr3L 2683994 intron Fife - chr3L 2684063 intron Fife - chr3L_14_2680001 chr3L_2680001 RAL-235 1128 chr3L 2719519 2719553 chr3L 2719640 2719672 5 121 6.5 6.0 6.2 0.7 153 chr3L 2719519 3` UTR Mrtf - chr3L 2719596 3` UTR Mrtf - chr3L 2719672 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-235 1129 chr3L 2751440 2751454 chr3L 2755755 2755769 F-element 6 4313 14.5 8.0 11.2 0.5 4329 chr3L 2751440 intron Mrtf - chr3L 2753604 intron Mrtf - chr3L 2755769 intron Mrtf - chr3L_6_2750001 chr3L_2750001 RAL-235 1130 chr3L 2766719 2766765 chr3L 2766833 2766876 14 112 4.0 2.0 3.0 3.5 157 chr3L 2766719 intergenic Mrtf -,Non2 + chr3L 2766798 intergenic Non2 +,Mrtf - chr3L 2766876 intergenic Non2 +,Mrtf - chr3L_14_2765001 chr3L_2765001 RAL-235 1131 chr3L 2795708 2795727 chr3L 2795851 2795870 6 143 7.0 3.5 5.2 1.0 162 chr3L 2795708 intron CG43444 - chr3L 2795789 intron CG43444 - chr3L 2795870 intron CG43444 - chr3L_6_2795001 chr3L_2795001 RAL-235 1132 chr3L 2927831 2927869 chr3L 2936115 2936160 Tirant 8 8288 1.0 3.5 2.2 2.5 8329 chr3L 2927831 intron Shab + chr3L 2931996 intron Shab + chr3L 2936160 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-235 1133 chr3L 2989536 2989584 chr3L 2989645 2989686 21 107 4.0 6.0 5.0 3.5 150 chr3L 2989536 intergenic not near genes chr3L 2989611 intergenic not near genes chr3L 2989686 intergenic not near genes chr3L_21_2985001 chr3L_2985001 RAL-235 1134 chr3L 3028323 3028346 chr3L 3028422 3028426 6 95 5.0 3.5 4.2 1.2 103 chr3L 3028323 intergenic not near genes chr3L 3028374 intergenic not near genes chr3L 3028426 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-235 1135 chr3L 3028994 3029021 chr3L 3029092 3029127 5 104 4.5 0.0 2.2 1.6 133 chr3L 3028994 intergenic not near genes chr3L 3029060 intergenic not near genes chr3L 3029127 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-235 1136 chr3L 3034343 3034350 chr3L 3034442 3034449 4 99 12.0 4.0 8.0 0.4 106 chr3L 3034343 intergenic not near genes chr3L 3034396 intergenic not near genes chr3L 3034449 intergenic not near genes chr3L_4_3030001 chr3L_3030001 RAL-235 1137 chr3L 3034351 3034387 chr3L 3034441 3034479 9 92 6.5 4.0 5.2 1.5 128 chr3L 3034351 intergenic not near genes chr3L 3034415 intergenic not near genes chr3L 3034479 intergenic not near genes chr3L_9_3030001 chr3L_3030001 RAL-235 1138 chr3L 3040308 3040332 chr3L 3042115 3042129 S-element 4 1805 4.5 1.0 2.8 1.1 1821 chr3L 3040308 3` UTR CG2162 + chr3L 3041218 intergenic not near genes chr3L 3042129 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-235 1139 chr3L 3050886 3050926 chr3L 3050985 3051033 6 105 4.0 0.5 2.2 1.9 147 chr3L 3050886 intron CG32485 + chr3L 3050960 intron CG32485 + chr3L 3051033 exon CG32485 + chr3L_6_3050001 chr3L_3050001 RAL-235 1140 chr3L 3051731 3051750 chr3L 3051985 3052012 pogo 12 259 9.0 3.5 6.2 1.7 281 chr3L 3051731 3` UTR CG32485 + chr3L 3051872 intergenic CG32485 + chr3L 3052012 intergenic CG32485 + chr3L_12_3050001 chr3L_3050001 RAL-235 1141 chr3L 3103441 3103469 chr3L 3103532 3103564 7 94 5.0 4.5 4.8 1.2 123 chr3L 3103441 intron Cht7 - chr3L 3103502 intron Cht7 - chr3L 3103564 intron Cht7 - chr3L_7_3100001 chr3L_3100001 RAL-235 1142 chr3L 3252319 3252357 chr3L 3252415 3252453 5 92 8.0 2.0 5.0 0.8 134 chr3L 3252319 5` UTR CR43626 + chr3L 3252386 5` UTR CR43626 + chr3L 3252453 5` UTR CR43626 + chr3L_5_3250001 chr3L_3250001 RAL-235 1143 chr3L 3259606 3259618 chr3L 3259721 3259730 4 114 13.0 6.5 9.8 0.4 124 chr3L 3259606 intron ckd + chr3L 3259668 intron ckd + chr3L 3259730 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-235 1144 chr3L 3259622 3259830 chr3L 3259717 3259950 12 111 1.5 6.5 4.0 2.4 328 chr3L 3259622 intron ckd + chr3L 3259786 intron ckd + chr3L 3259950 intron ckd + chr3L_12_3255001 chr3L_3255001 RAL-235 1145 chr3L 3281454 3281470 chr3L 3281947 3281986 Doc 6 502 2.0 5.0 3.5 1.3 532 chr3L 3281454 intron CG12017 + chr3L 3281720 intron CG12017 + chr3L 3281986 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-235 1146 chr3L 3392977 3393030 chr3L 3393080 3393124 8 94 0.0 2.0 1.0 4.0 147 chr3L 3392977 intergenic not near genes chr3L 3393050 intergenic not near genes chr3L 3393124 intergenic not near genes chr3L_8_3390001 chr3L_3390001 RAL-235 1147 chr3L 3436270 3436315 chr3L 3436369 3436414 14 97 3.5 4.0 3.8 2.9 144 chr3L 3436270 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436414 intron eIF5B - chr3L_14_3435001 chr3L_3435001 RAL-235 1148 chr3L 3475077 3475110 chr3L 3475522 3475559 jockey 6 454 1.0 4.0 2.5 1.7 482 chr3L 3475077 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475559 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-235 1149 chr3L 3494176 3494205 chr3L 3494273 3494302 9 94 2.0 3.0 2.5 2.6 126 chr3L 3494176 intron CG42324 + chr3L 3494239 intron CG42324 + chr3L 3494302 intron CG42324 + chr3L_9_3490001 chr3L_3490001 RAL-235 1150 chr3L 3565924 3565970 chr3L 3566013 3566018 9 83 3.0 2.5 2.8 2.4 94 chr3L 3565924 intron Eip63E + chr3L 3565971 intron Eip63E + chr3L 3566018 intron Eip63E + chr3L_9_3565001 chr3L_3565001 RAL-235 1151 chr3L 3593892 3593896 chr3L 3593984 3594001 4 102 2.0 0.0 1.0 2.0 109 chr3L 3593892 intron,5` UTR Eip63E +,snRNA:U7 + chr3L 3593946 intron Eip63E + chr3L 3594001 intron Eip63E + chr3L_4_3590001 chr3L_3590001 RAL-235 1152 chr3L 3619396 3619432 chr3L 3619493 3619545 8 111 4.5 4.0 4.2 1.5 149 chr3L 3619396 intergenic not near genes chr3L 3619470 intergenic not near genes chr3L 3619545 intergenic not near genes chr3L_8_3615001 chr3L_3615001 RAL-235 1153 chr3L 3766719 3766749 chr3L 3766824 3766854 8 105 1.5 3.0 2.2 2.5 135 chr3L 3766719 intron CG32264 - chr3L 3766786 intron CG32264 - chr3L 3766854 intron CG32264 - chr3L_8_3765001 chr3L_3765001 RAL-235 1154 chr3L 3768941 3768973 chr3L 3769062 3769092 4 117 7.0 2.5 4.8 0.7 151 chr3L 3768941 intron CG32264 - chr3L 3769016 intron CG32264 - chr3L 3769092 exon CG32264 - chr3L_4_3765001 chr3L_3765001 RAL-235 1155 chr3L 3795576 3795621 chr3L 3795673 3795707 17 94 6.5 4.0 5.2 2.7 131 chr3L 3795576 intron CG32264 - chr3L 3795642 intron CG32264 - chr3L 3795707 intron CG32264 - chr3L_17_3795001 chr3L_3795001 RAL-235 1156 chr3L 3797231 3797266 chr3L 3797324 3797369 12 96 1.5 3.0 2.2 3.8 138 chr3L 3797231 intron CG32264 - chr3L 3797300 intron CG32264 - chr3L 3797369 intron CG32264 - chr3L_12_3795001 chr3L_3795001 RAL-235 1157 chr3L 3833722 3833759 chr3L 3833983 3833985 pogo 11 256 1.5 2.5 2.0 3.7 263 chr3L 3833722 intron enc + chr3L 3833854 intron enc + chr3L 3833985 intron enc + chr3L_11_3830001 chr3L_3830001 RAL-235 1158 chr3L 3845548 3845576 chr3L 3845651 3845690 7 112 3.5 2.0 2.8 1.8 142 chr3L 3845548 intergenic not near genes chr3L 3845619 intergenic not near genes chr3L 3845690 intergenic not near genes chr3L_7_3845001 chr3L_3845001 RAL-235 1159 chr3L 3877442 3877465 chr3L 3877585 3877598 4 140 0.0 6.0 3.0 1.0 156 chr3L 3877442 intergenic not near genes chr3L 3877520 intergenic not near genes chr3L 3877598 intergenic not near genes chr3L_4_3875001 chr3L_3875001 RAL-235 1160 chr3L 3888973 3889007 chr3L 3889106 3889134 4 132 2.0 0.5 1.2 1.8 161 chr3L 3888973 intergenic not near genes chr3L 3889054 intergenic not near genes chr3L 3889134 intergenic not near genes chr3L_4_3885001 chr3L_3885001 RAL-235 1161 chr3L 3890950 3890979 chr3L 3891045 3891080 6 99 6.5 0.0 3.2 1.4 130 chr3L 3890950 intergenic not near genes chr3L 3891015 intergenic not near genes chr3L 3891080 intergenic not near genes chr3L_6_3890001 chr3L_3890001 RAL-235 1162 chr3L 3935809 3935848 chr3L 3935907 3935946 19 93 0.5 6.0 3.2 4.5 137 chr3L 3935809 5` UTR Eip63F-2 + chr3L 3935878 5` UTR Eip63F-2 + chr3L 3935946 5` UTR Eip63F-2 + chr3L_19_3935001 chr3L_3935001 RAL-235 1163 chr3L 3947965 3948001 chr3L 3948243 3948265 6 278 2.5 3.5 3.0 1.5 300 chr3L 3947965 exon CG10853 + chr3L 3948115 exon CG10853 + chr3L 3948265 exon CG10853 + chr3L_6_3945001 chr3L_3945001 RAL-235 1164 chr3L 4038020 4038029 chr3L 4038117 4038118 4 97 9.0 5.5 7.2 0.5 98 chr3L 4038020 3` UTR CG11593 - chr3L 4038069 3` UTR CG11593 - chr3L 4038118 3` UTR CG11593 - chr3L_4_4035001 chr3L_4035001 RAL-235 1165 chr3L 4038030 4038067 chr3L 4038114 4038166 15 88 4.5 4.5 4.5 2.7 136 chr3L 4038030 3` UTR CG11593 - chr3L 4038098 3` UTR CG11593 - chr3L 4038166 3` UTR CG11593 - chr3L_15_4035001 chr3L_4035001 RAL-235 1166 chr3L 4170067 4170113 chr3L 4170256 4170302 11 185 1.0 0.5 0.8 6.1 235 chr3L 4170067 intergenic Ero1L + chr3L 4170184 intergenic Ero1L + chr3L 4170302 intergenic Ero1L + chr3L_11_4170001 chr3L_4170001 RAL-235 1167 chr3L 4214518 4214542 chr3L 4214680 4214690 7 159 3.0 6.0 4.5 1.3 172 chr3L 4214518 intron CG43367 + chr3L 4214604 intron CG43367 + chr3L 4214690 intron CG43367 + chr3L_7_4210001 chr3L_4210001 RAL-235 1168 chr3L 4328737 4328754 chr3L 4336252 4336271 412 4 7516 4.0 2.0 3.0 1.0 7534 chr3L 4328737 intron Cip4 - chr3L 4332504 intron Cip4 - chr3L 4336271 exon Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-235 1169 chr3L 4328756 4328764 chr3L 4336249 4336273 412 6 7502 2.5 2.5 2.5 1.7 7517 chr3L 4328756 intron Cip4 - chr3L 4332514 intron Cip4 - chr3L 4336273 exon Cip4 - chr3L_6_4330001 chr3L_4330001 RAL-235 1170 chr3L 4341331 4341335 chr3L 21448026 21448026 6 17106694 17.5 19.0 18.2 0.3 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_6_12890001 chr3L_12890001 RAL-235 1171 chr3L 4346202 4346210 chr3L 4346264 4346308 7 91 7.5 4.0 5.8 1.0 106 chr3L 4346202 intron,5` UTR Cip4 -,CR45156 + chr3L 4346255 intron,5` UTR Cip4 -,CR45156 + chr3L 4346308 intron,intron Cip4 -,CR45156 + chr3L_7_4345001 chr3L_4345001 RAL-235 1172 chr3L 4347816 4347854 chr3L 4347917 4347951 16 100 5.0 4.0 4.5 2.9 135 chr3L 4347816 intron Cip4 - chr3L 4347884 intron Cip4 - chr3L 4347951 intron Cip4 - chr3L_16_4345001 chr3L_4345001 RAL-235 1173 chr3L 4364203 4364234 chr3L 4364312 4364343 7 108 1.5 5.5 3.5 1.6 140 chr3L 4364203 intergenic Cip4 -,mRpS6 + chr3L 4364273 intergenic Cip4 -,mRpS6 + chr3L 4364343 intergenic mRpS6 +,Cip4 - chr3L_7_4360001 chr3L_4360001 RAL-235 1174 chr3L 4441824 4441865 chr3L 4441917 4441927 16 88 5.0 4.5 4.8 2.8 103 chr3L 4441824 intergenic not near genes chr3L 4441876 intergenic not near genes chr3L 4441927 intergenic not near genes chr3L_16_4440001 chr3L_4440001 RAL-235 1175 chr3L 4607251 4607291 chr3L 4607362 4607396 5 108 1.5 3.5 2.5 1.4 145 chr3L 4607251 intron Src64B - chr3L 4607324 intron Src64B - chr3L 4607396 intron Src64B - chr3L_5_4605001 chr3L_4605001 RAL-235 1176 chr3L 4674132 4674185 chr3L 4674238 4674290 13 102 2.5 4.5 3.5 2.9 158 chr3L 4674132 intron axo - chr3L 4674211 intron axo - chr3L 4674290 intron axo - chr3L_13_4670001 chr3L_4670001 RAL-235 1177 chr3L 4702179 4702233 chr3L 4703175 4703224 13 991 1.0 1.0 1.0 6.5 1045 chr3L 4702179 intron RhoGEF64C + chr3L 4702702 intron RhoGEF64C + chr3L 4703224 intron RhoGEF64C + chr3L_13_4700001 chr3L_4700001 RAL-235 1178 chr3L 4784961 4784979 chr3L 4785180 4785208 4 221 1.5 3.5 2.5 1.1 247 chr3L 4784961 intron RhoGEF64C + chr3L 4785084 intron RhoGEF64C + chr3L 4785208 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-235 1179 chr3L 4837883 4837915 chr3L 4837972 4838004 9 95 4.5 6.5 5.5 1.4 121 chr3L 4837883 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4838004 3` UTR CG13707 - chr3L_9_4835001 chr3L_4835001 RAL-235 1180 chr3L 4837916 4837920 chr3L 4837966 4838019 5 84 4.5 3.5 4.0 1.0 103 chr3L 4837916 3` UTR CG13707 - chr3L 4837968 3` UTR CG13707 - chr3L 4838019 3` UTR CG13707 - chr3L_5_4835001 chr3L_4835001 RAL-235 1181 chr3L 4858307 4858330 chr3L 4858394 4858435 7 99 4.0 2.5 3.2 1.7 128 chr3L 4858307 intergenic not near genes chr3L 4858371 intergenic not near genes chr3L 4858435 intergenic not near genes chr3L_7_4855001 chr3L_4855001 RAL-235 1182 chr3L 4901111 4901150 chr3L 4907321 4907359 diver 10 6205 5.5 4.0 4.8 1.7 6248 chr3L 4901111 intergenic CG13704 + chr3L 4904235 intergenic not near genes chr3L 4907359 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-235 1183 chr3L 4907960 4907968 chr3L 4908056 4908062 4 95 5.5 1.0 3.2 1.0 102 chr3L 4907960 intergenic not near genes chr3L 4908011 intergenic not near genes chr3L 4908062 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-235 1184 chr3L 5034155 5034182 chr3L 5043313 5043347 roo 4 9165 3.5 0.5 2.0 1.3 9192 chr3L 5034155 intron Con - chr3L 5038751 intron Con - chr3L 5043347 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-235 1185 chr3L 5045439 5045480 chr3L 5050240 5050280 Doc 18 4798 5.0 5.0 5.0 3.0 4841 chr3L 5045439 intron Con - chr3L 5047860 intron Con - chr3L 5050280 intron Con - chr3L_18_5045001 chr3L_5045001 RAL-235 1186 chr3L 5093072 5093118 chr3L 5093170 5093200 4 94 3.0 1.5 2.2 1.2 128 chr3L 5093072 intergenic not near genes chr3L 5093136 intergenic not near genes chr3L 5093200 intergenic not near genes chr3L_4_5090001 chr3L_5090001 RAL-235 1187 chr3L 5101181 5101221 chr3L 5101280 5101321 9 96 5.5 5.5 5.5 1.4 140 chr3L 5101181 intergenic not near genes chr3L 5101251 intergenic not near genes chr3L 5101321 intergenic not near genes chr3L_9_5100001 chr3L_5100001 RAL-235 1188 chr3L 5104479 5104506 chr3L 5124624 5124660 7 20151 7.0 7.0 7.0 0.9 20181 chr3L 5104479 intergenic not near genes chr3L 5114570 intergenic not near genes chr3L 5124660 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-235 1189 chr3L 5130916 5130959 chr3L 5131036 5131066 12 110 4.0 3.0 3.5 2.7 150 chr3L 5130916 intergenic not near genes chr3L 5130991 intergenic not near genes chr3L 5131066 intergenic CG15212 + chr3L_12_5130001 chr3L_5130001 RAL-235 1190 chr3L 5164622 5164668 chr3L 5164714 5164764 20 93 6.0 7.5 6.8 2.6 142 chr3L 5164622 intron shep - chr3L 5164693 intron shep - chr3L 5164764 intron shep - chr3L_20_5160001 chr3L_5160001 RAL-235 1191 chr3L 5261146 5261163 chr3L 5261245 5261262 7 97 12.0 4.0 8.0 0.8 116 chr3L 5261146 intron shep - chr3L 5261204 intron shep - chr3L 5261262 intron shep - chr3L_7_5260001 chr3L_5260001 RAL-235 1192 chr3L 5348290 5348315 chr3L 5348657 5348682 5 365 2.0 3.0 2.5 1.4 392 chr3L 5348290 intron lama - chr3L 5348486 intron lama - chr3L 5348682 intron lama - chr3L_5_5345001 chr3L_5345001 RAL-235 1193 chr3L 5368829 5368836 chr3L 5368925 5368933 6 97 0.5 7.5 4.0 1.2 104 chr3L 5368829 intergenic not near genes chr3L 5368881 intergenic CR44515 + chr3L 5368933 intergenic CR44515 + chr3L_6_5365001 chr3L_5365001 RAL-235 1194 chr3L 5388212 5388231 chr3L 5388528 5388540 7 322 4.5 3.0 3.8 1.5 328 chr3L 5388212 intergenic not near genes chr3L 5388376 intergenic not near genes chr3L 5388540 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-235 1195 chr3L 5423393 5423397 chr3L 5423506 5423510 4 113 0.0 6.5 3.2 1.0 117 chr3L 5423393 intergenic not near genes chr3L 5423452 intergenic not near genes chr3L 5423510 intergenic not near genes chr3L_4_5420001 chr3L_5420001 RAL-235 1196 chr3L 5428656 5428689 chr3L 5428757 5428785 6 96 2.5 0.0 1.2 2.7 129 chr3L 5428656 intron CG34391 + chr3L 5428720 intron CG34391 + chr3L 5428785 intron CG34391 + chr3L_6_5425001 chr3L_5425001 RAL-235 1197 chr3L 5449520 5449563 chr3L 5449618 5449656 9 93 1.5 3.0 2.2 2.8 136 chr3L 5449520 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449656 intergenic not near genes chr3L_9_5445001 chr3L_5445001 RAL-235 1198 chr3L 5514382 5514415 chr3L 5514835 5514843 5 442 4.5 3.5 4.0 1.0 461 chr3L 5514382 intron Lkr - chr3L 5514612 intron Lkr - chr3L 5514843 intron Lkr - chr3L_5_5510001 chr3L_5510001 RAL-235 1199 chr3L 5520338 5520376 chr3L 5520465 5520486 9 124 2.5 2.5 2.5 2.6 148 chr3L 5520338 intron Lkr - chr3L 5520412 intron Lkr - chr3L 5520486 intron Lkr - chr3L_9_5520001 chr3L_5520001 RAL-235 1200 chr3L 5537725 5537756 chr3L 5538060 5538096 jockey 14 355 1.5 6.0 3.8 2.9 371 chr3L 5537725 intergenic not near genes chr3L 5537910 intergenic CG10625 - chr3L 5538096 intergenic CG10625 - chr3L_14_5535001 chr3L_5535001 RAL-235 1201 chr3L 5750021 5750040 chr3L 5750118 5750137 6 98 8.5 3.0 5.8 0.9 116 chr3L 5750021 intergenic DnaJ-1 -,sif + chr3L 5750079 3` UTR DnaJ-1 - chr3L 5750137 3` UTR DnaJ-1 - chr3L_6_5750001 chr3L_5750001 RAL-235 1202 chr3L 5750041 5750058 chr3L 5750117 5750153 11 85 6.0 3.0 4.5 2.0 112 chr3L 5750041 3` UTR DnaJ-1 - chr3L 5750097 3` UTR DnaJ-1 - chr3L 5750153 3` UTR DnaJ-1 - chr3L_11_5750001 chr3L_5750001 RAL-235 1203 chr3L 5910012 5910063 chr3L 5910273 5910324 pogo 19 259 7.5 3.5 5.5 2.9 312 chr3L 5910012 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910324 intron CG13288 + chr3L_19_5910001 chr3L_5910001 RAL-235 1204 chr3L 5980569 5980612 chr3L 5980676 5980714 9 98 7.0 2.5 4.8 1.6 145 chr3L 5980569 intergenic not near genes chr3L 5980642 intergenic not near genes chr3L 5980714 intergenic not near genes chr3L_9_5980001 chr3L_5980001 RAL-235 1205 chr3L 6001668 6001717 chr3L 6004388 6004437 jockey 14 2718 4.5 2.5 3.5 3.1 2769 chr3L 6001668 intron PVRAP + chr3L 6003052 intron PVRAP + chr3L 6004437 intron PVRAP + chr3L_14_6000001 chr3L_6000001 RAL-235 1206 chr3L 6040351 6040352 chr3L 6042725 6042728 Doc 4 2376 11.0 5.5 8.2 0.4 2377 chr3L 6040351 intergenic Jon65Aiv + chr3L 6041540 intergenic not near genes chr3L 6042728 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-235 1207 chr3L 6040354 6040388 chr3L 6042722 6042759 Doc 13 2373 4.0 5.0 4.5 2.4 2405 chr3L 6040354 intergenic Jon65Aiv + chr3L 6041556 intergenic not near genes chr3L 6042759 intergenic not near genes chr3L_13_6040001 chr3L_6040001 RAL-235 1208 chr3L 6155680 6155712 chr3L 6155786 6155818 9 105 5.5 8.0 6.8 1.2 138 chr3L 6155680 intergenic CR45421 - chr3L 6155749 intergenic not near genes chr3L 6155818 intergenic not near genes chr3L_9_6155001 chr3L_6155001 RAL-235 1209 chr3L 6159860 6159876 chr3L 6159970 6159974 6 108 3.0 9.5 6.2 0.8 114 chr3L 6159860 intergenic not near genes chr3L 6159917 intergenic not near genes chr3L 6159974 intergenic not near genes chr3L_6_6155001 chr3L_6155001 RAL-235 1210 chr3L 6159880 6159895 chr3L 6159964 6160005 8 102 2.0 9.0 5.5 1.2 125 chr3L 6159880 intergenic not near genes chr3L 6159942 intergenic not near genes chr3L 6160005 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-235 1211 chr3L 6167169 6167216 chr3L 6167287 6167332 11 115 6.5 2.5 4.5 2.0 163 chr3L 6167169 3` UTR CG10289 - chr3L 6167250 3` UTR CG10289 - chr3L 6167332 3` UTR CG10289 - chr3L_11_6165001 chr3L_6165001 RAL-235 1212 chr3L 6220902 6220944 chr3L 6230069 6230116 roo 15 9167 4.5 4.5 4.5 2.7 9214 chr3L 6220902 5` UTR pncr008:3L + chr3L 6225509 intergenic not near genes chr3L 6230116 intergenic not near genes chr3L_15_6225001 chr3L_6225001 RAL-235 1213 chr3L 6231147 6231164 chr3L 6231248 6231264 5 101 1.0 5.0 3.0 1.2 117 chr3L 6231147 intergenic not near genes chr3L 6231206 intergenic not near genes chr3L 6231264 intergenic not near genes chr3L_5_6230001 chr3L_6230001 RAL-235 1214 chr3L 6231167 6231352 chr3L 6231238 6231458 11 100 5.5 3.5 4.5 2.0 291 chr3L 6231167 intergenic not near genes chr3L 6231312 intergenic CG13299 - chr3L 6231458 intergenic CG13299 - chr3L_11_6230001 chr3L_6230001 RAL-235 1215 chr3L 6259369 6259391 chr3L 6261194 6261216 9 1824 11.5 19.5 15.5 0.5 1847 chr3L 6259369 3` UTR ImpL3 - chr3L 6260292 exon ImpL3 - chr3L 6261216 intron ImpL3 - chr3L_9_6260001 chr3L_6260001 RAL-235 1216 chr3L 6259250 6259300 chr3L 6261286 6261325 6 2032 22.0 29.5 25.8 0.2 2075 chr3L 6259250 3` UTR ImpL3 - chr3L 6260288 exon ImpL3 - chr3L 6261325 intron ImpL3 - chr3L_6_6260001 chr3L_6260001 RAL-235 1217 chr3L 6278191 6278240 chr3L 6278287 6278336 6 93 2.5 0.0 1.2 2.7 145 chr3L 6278191 intergenic not near genes chr3L 6278264 intergenic not near genes chr3L 6278336 intergenic not near genes chr3L_6_6275001 chr3L_6275001 RAL-235 1218 chr3L 6335007 6335036 chr3L 6335481 6335497 297 10 482 2.0 4.5 3.2 2.4 490 chr3L 6335007 intron CG13300 - chr3L 6335252 intron CG13300 - chr3L 6335497 intron CG13300 - chr3L_10_6335001 chr3L_6335001 RAL-235 1219 chr3L 6405643 6405685 chr3L 6432127 6432169 roo 16 26481 6.0 7.5 6.8 2.1 26526 chr3L 6405643 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432169 intron CG42747 + chr3L_16_6415001 chr3L_6415001 RAL-235 1220 chr3L 6481963 6481978 chr3L 6482062 6482063 7 96 12.5 3.0 7.8 0.8 100 chr3L 6481963 intron CG42747 + chr3L 6482013 intron CG42747 + chr3L 6482063 intron CG42747 + chr3L_7_6480001 chr3L_6480001 RAL-235 1221 chr3L 6512247 6512284 chr3L 6512351 6512390 10 101 3.5 2.5 3.0 2.5 143 chr3L 6512247 intron sfl + chr3L 6512318 intron sfl + chr3L 6512390 intron sfl + chr3L_10_6510001 chr3L_6510001 RAL-235 1222 chr3L 6723685 6723734 chr3L 6723802 6723849 12 114 3.5 7.5 5.5 1.8 164 chr3L 6723685 intergenic not near genes chr3L 6723767 intergenic not near genes chr3L 6723849 intergenic not near genes chr3L_12_6720001 chr3L_6720001 RAL-235 1223 chr3L 6781112 6781150 chr3L 6783137 6783177 Doc 10 2031 7.5 0.0 3.8 2.1 2065 chr3L 6781112 intergenic not near genes chr3L 6782144 intergenic not near genes chr3L 6783177 intergenic not near genes chr3L_10_6780001 chr3L_6780001 RAL-235 1224 chr3L 6820613 6820626 chr3L 6820717 6820730 4 103 12.0 11.0 11.5 0.3 117 chr3L 6820613 intergenic not near genes chr3L 6820672 intergenic not near genes chr3L 6820730 intergenic not near genes chr3L_4_6820001 chr3L_6820001 RAL-235 1225 chr3L 6855914 6855936 chr3L 6860703 6860732 Doc 6 4796 3.0 1.0 2.0 2.0 4818 chr3L 6855914 intergenic not near genes chr3L 6858323 intergenic not near genes chr3L 6860732 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-235 1226 chr3L 6868699 6868743 chr3L 6868797 6868841 11 98 0.0 4.5 2.2 3.4 142 chr3L 6868699 intergenic not near genes chr3L 6868770 intergenic not near genes chr3L 6868841 intergenic not near genes chr3L_11_6865001 chr3L_6865001 RAL-235 1227 chr3L 6875228 6875245 chr3L 6875319 6875337 4 93 1.0 0.0 0.5 2.7 109 chr3L 6875228 intergenic not near genes chr3L 6875282 intergenic not near genes chr3L 6875337 intergenic not near genes chr3L_4_6875001 chr3L_6875001 RAL-235 1228 chr3L 6887498 6887545 chr3L 6895008 6895053 roo 15 7507 5.5 7.0 6.2 2.1 7555 chr3L 6887498 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895053 intergenic not near genes chr3L_15_6890001 chr3L_6890001 RAL-235 1229 chr3L 6994872 6994917 chr3L 6995501 6995548 BS 8 629 1.5 2.5 2.0 2.7 676 chr3L 6994872 intergenic bin + chr3L 6995210 intergenic not near genes chr3L 6995548 intergenic not near genes chr3L_8_6995001 chr3L_6995001 RAL-235 1230 chr3L 7022015 7022051 chr3L 7022232 7022277 10 223 0.0 5.0 2.5 2.9 262 chr3L 7022015 intron Mp + chr3L 7022146 intron Mp + chr3L 7022277 intron Mp + chr3L_10_7020001 chr3L_7020001 RAL-235 1231 chr3L 7033047 7033086 chr3L 7033155 7033176 4 95 1.5 3.0 2.2 1.2 129 chr3L 7033047 intron Mp + chr3L 7033112 intron Mp + chr3L 7033176 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-235 1232 chr3L 7041902 7041921 chr3L 7042000 7042018 5 97 6.0 4.0 5.0 0.8 116 chr3L 7041902 intron Mp + chr3L 7041960 intron Mp + chr3L 7042018 intron Mp + chr3L_5_7040001 chr3L_7040001 RAL-235 1233 chr3L 7061386 7061405 chr3L 7061492 7061511 8 105 4.0 3.0 3.5 1.8 125 chr3L 7061386 intron CG8641 - chr3L 7061448 intron CG8641 - chr3L 7061511 intron CG8641 - chr3L_8_7060001 chr3L_7060001 RAL-235 1234 chr3L 7063148 7063173 chr3L 7063482 7063525 10 343 5.0 6.5 5.8 1.5 377 chr3L 7063148 5` UTR CG8641 - chr3L 7063336 intron CG8641 - chr3L 7063525 intron CG8641 - chr3L_10_7060001 chr3L_7060001 RAL-235 1235 chr3L 7107196 7107224 chr3L 7107296 7107324 4 99 5.0 7.0 6.0 0.6 128 chr3L 7107196 intron form3 + chr3L 7107260 intron form3 + chr3L 7107324 intron form3 + chr3L_4_7105001 chr3L_7105001 RAL-235 1236 chr3L 7112563 7112613 chr3L 7112669 7112717 12 103 6.5 8.0 7.2 1.5 154 chr3L 7112563 intron form3 + chr3L 7112640 intron form3 + chr3L 7112717 intron form3 + chr3L_12_7110001 chr3L_7110001 RAL-235 1237 chr3L 7150020 7150044 chr3L 7150105 7150143 16 95 0.5 7.0 3.8 3.3 123 chr3L 7150020 intron corn - chr3L 7150082 intron corn - chr3L 7150143 intron corn - chr3L_16_7150001 chr3L_7150001 RAL-235 1238 chr3L 7185724 7185753 chr3L 7185924 7185953 6 197 4.5 8.5 6.5 0.8 229 chr3L 7185724 intron Dscam2 - chr3L 7185838 intron Dscam2 - chr3L 7185953 intron Dscam2 - chr3L_6_7185001 chr3L_7185001 RAL-235 1239 chr3L 7187389 7187418 chr3L 7187491 7187520 8 102 0.0 1.0 0.5 5.3 131 chr3L 7187389 intron Dscam2 - chr3L 7187454 intron Dscam2 - chr3L 7187520 intron Dscam2 - chr3L_8_7185001 chr3L_7185001 RAL-235 1240 chr3L 7225078 7225096 chr3L 7225177 7225192 9 97 10.5 4.0 7.2 1.1 114 chr3L 7225078 intergenic not near genes chr3L 7225135 intergenic not near genes chr3L 7225192 intergenic not near genes chr3L_9_7225001 chr3L_7225001 RAL-235 1241 chr3L 7225098 7225127 chr3L 7225176 7225226 11 94 3.0 4.0 3.5 2.4 128 chr3L 7225098 intergenic not near genes chr3L 7225162 intergenic not near genes chr3L 7225226 intergenic not near genes chr3L_11_7225001 chr3L_7225001 RAL-235 1242 chr3L 7232749 7232792 chr3L 7232840 7232856 13 82 3.0 4.0 3.5 2.9 107 chr3L 7232749 intergenic not near genes chr3L 7232802 intergenic not near genes chr3L 7232856 intergenic not near genes chr3L_13_7230001 chr3L_7230001 RAL-235 1243 chr3L 7244945 7244963 chr3L 7245037 7245046 4 88 4.0 1.0 2.5 1.1 101 chr3L 7244945 exon mei-P22 + chr3L 7244996 exon mei-P22 + chr3L 7245046 exon mei-P22 + chr3L_4_7240001 chr3L_7240001 RAL-235 1244 chr3L 7253256 7253300 chr3L 7253489 7253529 10 228 3.5 2.0 2.8 2.6 273 chr3L 7253256 intron CG14830 - chr3L 7253392 intron CG14830 - chr3L 7253529 intron CG14830 - chr3L_10_7250001 chr3L_7250001 RAL-235 1245 chr3L 7264877 7264895 chr3L 7264967 7264998 5 97 0.0 2.0 1.0 2.5 121 chr3L 7264877 intergenic not near genes chr3L 7264938 intergenic not near genes chr3L 7264998 intergenic not near genes chr3L_5_7260001 chr3L_7260001 RAL-235 1246 chr3L 7277091 7277138 chr3L 7277212 7277260 16 117 1.5 4.5 3.0 4.0 169 chr3L 7277091 exon unc-13-4A - chr3L 7277176 intron unc-13-4A - chr3L 7277260 intron unc-13-4A - chr3L_16_7275001 chr3L_7275001 RAL-235 1247 chr3L 7285447 7285477 chr3L 7285528 7285575 9 92 3.5 1.5 2.5 2.6 128 chr3L 7285447 intron unc-13-4A - chr3L 7285511 intron unc-13-4A - chr3L 7285575 intron unc-13-4A - chr3L_9_7285001 chr3L_7285001 RAL-235 1248 chr3L 7371163 7371203 chr3L 7371266 7371307 8 99 2.5 7.0 4.8 1.4 144 chr3L 7371163 intron akirin + chr3L 7371235 intron akirin + chr3L 7371307 intron akirin + chr3L_8_7370001 chr3L_7370001 RAL-235 1249 chr3L 7375908 7375959 chr3L 7376000 7376050 17 91 5.0 5.5 5.2 2.7 142 chr3L 7375908 exon SMSr - chr3L 7375979 intron SMSr - chr3L 7376050 intron SMSr - chr3L_17_7375001 chr3L_7375001 RAL-235 1250 chr3L 7377296 7377348 chr3L 7380421 7380469 297 13 3121 3.0 3.0 3.0 3.2 3173 chr3L 7377296 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380469 intron SMSr - chr3L_13_7375001 chr3L_7375001 RAL-235 1251 chr3L 7450678 7450684 chr3L 7450781 7450785 4 102 5.0 2.0 3.5 0.9 107 chr3L 7450678 intron CG42458 + chr3L 7450732 intron CG42458 + chr3L 7450785 intron CG42458 + chr3L_4_7450001 chr3L_7450001 RAL-235 1252 chr3L 7450689 7450719 chr3L 7450778 7450819 9 96 2.5 1.5 2.0 3.0 130 chr3L 7450689 intron CG42458 + chr3L 7450754 intron CG42458 + chr3L 7450819 intron CG42458 + chr3L_9_7450001 chr3L_7450001 RAL-235 1253 chr3L 7488856 7488861 chr3L 7488957 7488962 4 101 6.0 3.5 4.8 0.7 106 chr3L 7488856 intergenic not near genes chr3L 7488909 intergenic not near genes chr3L 7488962 intergenic not near genes chr3L_4_7485001 chr3L_7485001 RAL-235 1254 chr3L 7488862 7488874 chr3L 7488956 7488974 8 98 4.0 3.5 3.8 1.7 112 chr3L 7488862 intergenic not near genes chr3L 7488918 intergenic not near genes chr3L 7488974 intergenic not near genes chr3L_8_7485001 chr3L_7485001 RAL-235 1255 chr3L 7498743 7498781 chr3L 7503540 7503568 F-element 15 4795 6.5 6.5 6.5 2.0 4825 chr3L 7498743 5` UTR CG8539 - chr3L 7501156 intergenic not near genes chr3L 7503568 intergenic not near genes chr3L_15_7500001 chr3L_7500001 RAL-235 1256 chr3L 7505397 7505433 chr3L 7505493 7505529 5 95 6.5 3.0 4.8 0.9 132 chr3L 7505397 intergenic CG7548 - chr3L 7505463 intergenic CG7548 - chr3L 7505529 intergenic CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-235 1257 chr3L 7524132 7524173 chr3L 7524229 7524275 10 99 7.5 0.0 3.8 2.1 143 chr3L 7524132 intron ltl + chr3L 7524204 intron ltl + chr3L 7524275 intron ltl + chr3L_10_7520001 chr3L_7520001 RAL-235 1258 chr3L 7591143 7591182 chr3L 7591235 7591255 7 92 4.0 2.5 3.2 1.7 112 chr3L 7591143 intergenic CG7716 - chr3L 7591199 intergenic CG7716 - chr3L 7591255 intergenic CG7716 - chr3L_7_7590001 chr3L_7590001 RAL-235 1259 chr3L 7591876 7591928 chr3L 7591973 7591993 11 82 1.0 2.0 1.5 4.4 117 chr3L 7591876 intergenic not near genes chr3L 7591934 intergenic not near genes chr3L 7591993 intergenic not near genes chr3L_11_7590001 chr3L_7590001 RAL-235 1260 chr3L 7650525 7650570 chr3L 7650704 7650749 12 175 1.0 1.0 1.0 6.0 224 chr3L 7650525 intergenic CG32373 + chr3L 7650637 5` UTR CG32373 + chr3L 7650749 5` UTR CG32373 + chr3L_12_7650001 chr3L_7650001 RAL-235 1261 chr3L 7726552 7726594 chr3L 7726873 7726922 15 318 7.5 4.5 6.0 2.1 370 chr3L 7726552 intron CG32373 + chr3L 7726737 intron CG32373 + chr3L 7726922 intron CG32373 + chr3L_15_7725001 chr3L_7725001 RAL-235 1262 chr3L 7793692 7793742 chr3L 7800764 7800802 297 13 7066 3.0 6.0 4.5 2.4 7110 chr3L 7793692 intron CG32369 - chr3L 7797247 intron CG32369 - chr3L 7800802 intron CG32369 - chr3L_13_7795001 chr3L_7795001 RAL-235 1263 chr3L 7876084 7876126 chr3L 7876183 7876225 8 97 0.0 0.5 0.2 6.7 141 chr3L 7876084 intron CG32365 + chr3L 7876154 intron CG32365 + chr3L 7876225 intron CG32365 + chr3L_8_7875001 chr3L_7875001 RAL-235 1264 chr3L 7886501 7886547 chr3L 7889033 7889064 Stalker4 13 2534 2.0 3.5 2.8 3.4 2563 chr3L 7886501 intron CG32365 + chr3L 7887782 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_13_7885001 chr3L_7885001 RAL-235 1265 chr3L 7916819 7916853 chr3L 7926010 7926044 roo 11 9190 4.5 11.0 7.8 1.2 9225 chr3L 7916819 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926044 3` UTR syd - chr3L_11_7920001 chr3L_7920001 RAL-235 1266 chr3L 7985349 7985373 chr3L 7987697 7987721 NOF 8 2348 7.0 3.5 5.2 1.3 2372 chr3L 7985349 intron nmo + chr3L 7986535 intron nmo + chr3L 7987721 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-235 1267 chr3L 7985374 7985391 chr3L 7987696 7987734 NOF 5 2340 5.0 3.5 4.2 1.0 2360 chr3L 7985374 intron nmo + chr3L 7986554 intron nmo + chr3L 7987734 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-235 1268 chr3L 8019730 8019735 chr3L 8024115 8024172 NOF 5 4409 1.0 1.0 1.0 2.5 4442 chr3L 8019730 intron nmo + chr3L 8021951 intron nmo + chr3L 8024172 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-235 1269 chr3L 8064617 8064632 chr3L 8064826 8064868 4 229 2.0 1.5 1.8 1.4 251 chr3L 8064617 intron Ect4 + chr3L 8064742 intron Ect4 + chr3L 8064868 intron Ect4 + chr3L_4_8060001 chr3L_8060001 RAL-235 1270 chr3L 8208109 8208154 chr3L 8208261 8208269 11 137 4.5 4.0 4.2 2.1 160 chr3L 8208109 intergenic not near genes chr3L 8208189 intergenic not near genes chr3L 8208269 intergenic not near genes chr3L_11_8205001 chr3L_8205001 RAL-235 1271 chr3L 8214734 8214741 chr3L 8214821 8214846 4 101 3.0 5.0 4.0 0.8 112 chr3L 8214734 intergenic not near genes chr3L 8214790 intergenic CG8012 + chr3L 8214846 intergenic CG8012 + chr3L_4_8210001 chr3L_8210001 RAL-235 1272 chr3L 8273049 8273084 chr3L 8273152 8273190 6 112 3.0 1.0 2.0 2.0 141 chr3L 8273049 intron Dscam4 + chr3L 8273120 intron Dscam4 + chr3L 8273190 exon Dscam4 + chr3L_6_8270001 chr3L_8270001 RAL-235 1273 chr3L 8295775 8295823 chr3L 8295950 8296001 12 173 4.0 6.0 5.0 2.0 226 chr3L 8295775 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8296001 intergenic not near genes chr3L_12_8295001 chr3L_8295001 RAL-235 1274 chr3L 8392737 8392788 chr3L 8392844 8392887 10 104 4.5 2.0 3.2 2.4 150 chr3L 8392737 intergenic Jon66Cii -,Jon66Ci + chr3L 8392812 intergenic Jon66Cii -,Jon66Ci + chr3L 8392887 exon Jon66Cii - chr3L_10_8390001 chr3L_8390001 RAL-235 1275 chr3L 8498284 8498324 chr3L 8505770 8505811 blood 9 7484 7.5 4.0 5.8 1.3 7527 chr3L 8498284 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505811 intron CG43163 - chr3L_9_8500001 chr3L_8500001 RAL-235 1276 chr3L 8577294 8577310 chr3L 8577407 8577435 11 120 7.0 6.5 6.8 1.4 141 chr3L 8577294 5` UTR CG43078 + chr3L 8577364 5` UTR CG43078 + chr3L 8577435 5` UTR CG43078 + chr3L_11_8575001 chr3L_8575001 RAL-235 1277 chr3L 8577313 8577321 chr3L 8577403 8577445 5 107 4.5 6.5 5.5 0.8 132 chr3L 8577313 5` UTR CG43078 + chr3L 8577379 5` UTR CG43078 + chr3L 8577445 5` UTR CG43078 + chr3L_5_8575001 chr3L_8575001 RAL-235 1278 chr3L 8692977 8693022 chr3L 8693098 8693147 32 119 4.0 6.5 5.2 5.2 170 chr3L 8692977 5` UTR CR44526 + chr3L 8693062 5` UTR CR44526 + chr3L 8693147 5` UTR CR44526 + chr3L_32_8690001 chr3L_8690001 RAL-235 1279 chr3L 8791267 8791298 chr3L 8796702 8796703 I-element 5 5423 4.0 0.0 2.0 1.7 5436 chr3L 8791267 exon Fhos + chr3L 8793985 intron Fhos + chr3L 8796703 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-235 1280 chr3L 8851910 8851946 chr3L 8852008 8852019 6 94 3.0 4.0 3.5 1.3 109 chr3L 8851910 intron dally + chr3L 8851964 intron dally + chr3L 8852019 intron dally + chr3L_6_8850001 chr3L_8850001 RAL-235 1281 chr3L 8861515 8861554 chr3L 8861626 8861664 7 110 2.5 4.0 3.2 1.7 149 chr3L 8861515 intron dally + chr3L 8861590 intron dally + chr3L 8861664 intron dally + chr3L_7_8860001 chr3L_8860001 RAL-235 1282 chr3L 8884386 8884421 chr3L 8884605 8884636 8 210 5.0 0.5 2.8 2.1 250 chr3L 8884386 intron dally + chr3L 8884511 intron dally + chr3L 8884636 intron dally + chr3L_8_8880001 chr3L_8880001 RAL-235 1283 chr3L 9003951 9003965 chr3L 9004036 9004070 5 99 3.5 3.5 3.5 1.1 119 chr3L 9003951 intergenic not near genes chr3L 9004010 intergenic not near genes chr3L 9004070 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-235 1284 chr3L 9003966 9003973 chr3L 9004033 9004078 6 97 3.5 3.5 3.5 1.3 112 chr3L 9003966 intergenic not near genes chr3L 9004022 intergenic not near genes chr3L 9004078 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-235 1285 chr3L 9061118 9061164 chr3L 9061244 9061278 9 114 1.5 3.5 2.5 2.6 160 chr3L 9061118 intron Argk - chr3L 9061198 intron Argk - chr3L 9061278 intron Argk - chr3L_9_9060001 chr3L_9060001 RAL-235 1286 chr3L 9076906 9076946 chr3L 9084486 9084514 412 6 7573 4.0 3.0 3.5 1.3 7608 chr3L 9076906 exon Tequila + chr3L 9080710 intron Tequila + chr3L 9084514 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-235 1287 chr3L 9086901 9086931 chr3L 9087004 9087018 10 98 5.5 8.0 6.8 1.3 117 chr3L 9086901 exon Tequila + chr3L 9086960 exon Tequila + chr3L 9087018 exon Tequila + chr3L_10_9085001 chr3L_9085001 RAL-235 1288 chr3L 9125778 9125783 chr3L 9125875 9125880 4 97 2.5 2.0 2.2 1.2 102 chr3L 9125778 intron bol - chr3L 9125829 intron bol - chr3L 9125880 intron bol - chr3L_4_9125001 chr3L_9125001 RAL-235 1289 chr3L 9143335 9143366 chr3L 9143437 9143468 4 102 1.5 1.0 1.2 1.8 133 chr3L 9143335 intron nwk + chr3L 9143402 intron nwk + chr3L 9143468 intron nwk + chr3L_4_9140001 chr3L_9140001 RAL-235 1290 chr3L 9164695 9164705 chr3L 9166163 9166179 hobo 5 1474 6.5 0.0 3.2 1.2 1484 chr3L 9164695 intron Rdl - chr3L 9165437 intron Rdl - chr3L 9166179 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-235 1291 chr3L 9164710 9164720 chr3L 9166162 9166201 hobo 5 1474 4.5 0.0 2.2 1.6 1491 chr3L 9164710 intron Rdl - chr3L 9165456 intron Rdl - chr3L 9166201 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-235 1292 chr3L 9219246 9219265 chr3L 9219920 9219957 jockey 5 683 4.5 4.5 4.5 0.9 711 chr3L 9219246 intergenic not near genes chr3L 9219602 intergenic not near genes chr3L 9219957 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-235 1293 chr3L 9234523 9234558 chr3L 9234745 9234784 9 226 3.5 4.0 3.8 1.9 261 chr3L 9234523 intergenic not near genes chr3L 9234654 intergenic CG4483 - chr3L 9234784 intergenic CG4483 - chr3L_9_9230001 chr3L_9230001 RAL-235 1294 chr3L 9312718 9312729 chr3L 9312808 9312808 5 93 5.0 5.5 5.2 0.8 90 chr3L 9312718 intergenic not near genes chr3L 9312763 intergenic not near genes chr3L 9312808 intergenic not near genes chr3L_5_9310001 chr3L_9310001 RAL-235 1295 chr3L 9344199 9344222 chr3L 9344278 9344320 9 90 0.0 7.5 3.8 1.9 121 chr3L 9344199 intron PGRP-LC + chr3L 9344260 intron PGRP-LC + chr3L 9344320 intron PGRP-LC + chr3L_9_9340001 chr3L_9340001 RAL-235 1296 chr3L 9347372 9347415 chr3L 9347469 9347512 24 96 3.0 3.0 3.0 6.0 140 chr3L 9347372 intron PGRP-LC + chr3L 9347442 intron PGRP-LC + chr3L 9347512 intron PGRP-LC + chr3L_24_9345001 chr3L_9345001 RAL-235 1297 chr3L 9348449 9348487 chr3L 9348971 9349009 9 519 2.5 0.0 1.2 4.1 560 chr3L 9348449 intergenic PGRP-LC + chr3L 9348729 intergenic PGRP-LC + chr3L 9349009 intergenic not near genes chr3L_9_9345001 chr3L_9345001 RAL-235 1298 chr3L 9359573 9359584 chr3L 9359684 9359694 5 109 15.5 8.5 12.0 0.4 121 chr3L 9359573 3` UTR CG32039 + chr3L 9359634 3` UTR CG32039 + chr3L 9359694 3` UTR CG32039 + chr3L_5_9355001 chr3L_9355001 RAL-235 1299 chr3L 9359586 9359623 chr3L 9359682 9359734 18 106 6.5 7.5 7.0 2.2 148 chr3L 9359586 3` UTR CG32039 + chr3L 9359660 3` UTR CG32039 + chr3L 9359734 3` UTR CG32039 + chr3L_18_9355001 chr3L_9355001 RAL-235 1300 chr3L 9419646 9419666 chr3L 9419719 9419733 4 77 3.5 2.5 3.0 1.0 87 chr3L 9419646 intron CG3967 - chr3L 9419690 intron CG3967 - chr3L 9419733 intron CG3967 - chr3L_4_9415001 chr3L_9415001 RAL-235 1301 chr3L 9501687 9501728 chr3L 9502193 9502199 roo 13 501 2.0 3.0 2.5 3.7 512 chr3L 9501687 intron path - chr3L 9501943 intron path - chr3L 9502199 intron path - chr3L_13_9500001 chr3L_9500001 RAL-235 1302 chr3L 9502595 9502643 chr3L 9502695 9502743 11 98 1.5 2.0 1.8 3.9 148 chr3L 9502595 intron path - chr3L 9502669 intron path - chr3L 9502743 intron path - chr3L_11_9500001 chr3L_9500001 RAL-235 1303 chr3L 9503456 9503463 chr3L 9503565 9503572 4 108 5.5 14.5 10.0 0.4 116 chr3L 9503456 intron path - chr3L 9503514 intron path - chr3L 9503572 intron path - chr3L_4_9500001 chr3L_9500001 RAL-235 1304 chr3L 9510906 9510944 chr3L 9511018 9511042 4 108 0.0 2.5 1.2 1.8 136 chr3L 9510906 intron RpS9 - chr3L 9510974 intron RpS9 - chr3L 9511042 intron RpS9 - chr3L_4_9510001 chr3L_9510001 RAL-235 1305 chr3L 9516556 9516596 chr3L 9516657 9516697 12 99 5.5 7.0 6.2 1.7 141 chr3L 9516556 intron CG33700 - chr3L 9516626 intron CG33700 - chr3L 9516697 intron CG33700 - chr3L_12_9515001 chr3L_9515001 RAL-235 1306 chr3L 9541833 9541869 chr3L 9541941 9541977 9 99 2.5 4.5 3.5 2.0 144 chr3L 9541833 intergenic Ir67a - chr3L 9541905 intergenic Ir67a - chr3L 9541977 intergenic Ir67a - chr3L_9_9540001 chr3L_9540001 RAL-235 1307 chr3L 9571884 9571932 chr3L 9572252 9572292 jockey 16 366 5.0 2.0 3.5 3.6 408 chr3L 9571884 intron CG42673 + chr3L 9572088 intron CG42673 + chr3L 9572292 intron CG42673 + chr3L_16_9570001 chr3L_9570001 RAL-235 1308 chr3L 9572282 9572329 chr3L 9572375 9572428 7 90 2.5 4.5 3.5 1.6 146 chr3L 9572282 intron CG42673 + chr3L 9572355 intron CG42673 + chr3L 9572428 intron CG42673 + chr3L_7_9570001 chr3L_9570001 RAL-235 1309 chr3L 9575903 9575943 chr3L 9580991 9581013 jockey 8 5080 4.5 7.5 6.0 1.1 5110 chr3L 9575903 intron CG42673 + chr3L 9578458 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-235 1310 chr3L 9637833 9637866 chr3L 9637935 9637968 13 102 4.5 1.5 3.0 3.2 135 chr3L 9637833 exon fry - chr3L 9637900 intron fry - chr3L 9637968 intron fry - chr3L_13_9635001 chr3L_9635001 RAL-235 1311 chr3L 9639033 9639059 chr3L 9639137 9639163 6 105 0.0 9.5 4.8 1.0 130 chr3L 9639033 intron fry - chr3L 9639098 intron fry - chr3L 9639163 intron fry - chr3L_6_9635001 chr3L_9635001 RAL-235 1312 chr3L 9646788 9646841 chr3L 9646906 9646958 21 114 3.5 1.0 2.2 6.6 170 chr3L 9646788 intron,intron fry -,CG33696 + chr3L 9646873 intron,intron fry -,CG33696 + chr3L 9646958 intron,intron fry -,CG33696 + chr3L_21_9645001 chr3L_9645001 RAL-235 1313 chr3L 9653875 9653904 chr3L 9655172 9655200 9 1293 8.5 5.0 6.8 1.2 1325 chr3L 9653875 intron,intron fry -,CG33696 + chr3L 9654538 intron,intron fry -,CG33696 + chr3L 9655200 intron,intron fry -,CG33696 + chr3L_9_9650001 chr3L_9650001 RAL-235 1314 chr3L 9684183 9684219 chr3L 9684298 9684338 11 114 7.0 0.5 3.8 2.3 155 chr3L 9684183 3` UTR CG6767 - chr3L 9684260 3` UTR CG6767 - chr3L 9684338 3` UTR CG6767 - chr3L_11_9680001 chr3L_9680001 RAL-235 1315 chr3L 9715576 9715625 chr3L 9715672 9715715 8 94 5.0 1.5 3.2 1.9 139 chr3L 9715576 intron vsg + chr3L 9715646 intron vsg + chr3L 9715715 intron vsg + chr3L_8_9715001 chr3L_9715001 RAL-235 1316 chr3L 9775102 9775141 chr3L 9775194 9775222 11 93 2.5 3.0 2.8 2.9 120 chr3L 9775102 intron CG8177 + chr3L 9775162 intron CG8177 + chr3L 9775222 intron CG8177 + chr3L_11_9775001 chr3L_9775001 RAL-235 1317 chr3L 9817633 9817660 chr3L 9817733 9817760 6 100 1.5 5.5 3.5 1.3 127 chr3L 9817633 intron CG43897 + chr3L 9817696 intron CG43897 + chr3L 9817760 intron CG43897 + chr3L_6_9815001 chr3L_9815001 RAL-235 1318 chr3L 9831709 9831737 chr3L 9831810 9831838 4 94 0.0 11.5 5.8 0.6 129 chr3L 9831709 intron CG43897 + chr3L 9831774 intron CG43897 + chr3L 9831838 intron CG43897 + chr3L_4_9830001 chr3L_9830001 RAL-235 1319 chr3L 9853224 9853271 chr3L 9853328 9853365 9 96 5.0 4.5 4.8 1.6 141 chr3L 9853224 intron RasGAP1 - chr3L 9853294 intron RasGAP1 - chr3L 9853365 intron RasGAP1 - chr3L_9_9850001 chr3L_9850001 RAL-235 1320 chr3L 9929128 9929176 chr3L 9929326 9929388 4 200 4.0 0.0 2.0 1.3 260 chr3L 9929128 intron CG34356 + chr3L 9929258 intron CG34356 + chr3L 9929388 intron CG34356 + chr3L_4_9925001 chr3L_9925001 RAL-235 1321 chr3L 9929651 9929697 chr3L 9938451 9938482 roo 5 8794 2.0 4.5 3.2 1.2 8831 chr3L 9929651 intron CG34356 + chr3L 9934066 intron CG34356 + chr3L 9938482 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-235 1322 chr3L 9941947 9941963 chr3L 9942043 9942058 4 94 5.5 6.0 5.8 0.6 111 chr3L 9941947 intron CG34356 + chr3L 9942002 intron CG34356 + chr3L 9942058 intron CG34356 + chr3L_4_9940001 chr3L_9940001 RAL-235 1323 chr3L 9980258 9980294 chr3L 9980348 9980380 14 92 2.0 4.0 3.0 3.5 122 chr3L 9980258 intron dpr6 + chr3L 9980319 intron dpr6 + chr3L 9980380 intron dpr6 + chr3L_14_9980001 chr3L_9980001 RAL-235 1324 chr3L 10002925 10002942 chr3L 10003034 10003057 4 108 5.0 0.5 2.8 1.1 132 chr3L 10002925 intron dpr6 + chr3L 10002991 intron dpr6 + chr3L 10003057 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-235 1325 chr3L 10032551 10032561 chr3L 10032654 10032663 5 105 0.0 6.5 3.2 1.2 112 chr3L 10032551 intron dpr6 + chr3L 10032607 intron dpr6 + chr3L 10032663 intron dpr6 + chr3L_5_10030001 chr3L_10030001 RAL-235 1326 chr3L 10115892 10115901 chr3L 10116025 10116030 5 133 6.0 1.0 3.5 1.1 138 chr3L 10115892 intron dpr6 + chr3L 10115961 intron dpr6 + chr3L 10116030 intron dpr6 + chr3L_5_10115001 chr3L_10115001 RAL-235 1327 chr3L 10115904 10115935 chr3L 10116022 10116045 6 124 3.0 1.0 2.0 2.0 141 chr3L 10115904 intron dpr6 + chr3L 10115974 intron dpr6 + chr3L 10116045 intron dpr6 + chr3L_6_10115001 chr3L_10115001 RAL-235 1328 chr3L 10272491 10272531 chr3L 10272612 10272658 12 118 3.5 5.0 4.2 2.3 167 chr3L 10272491 intergenic not near genes chr3L 10272574 intergenic not near genes chr3L 10272658 intergenic not near genes chr3L_12_10270001 chr3L_10270001 RAL-235 1329 chr3L 10298662 10298695 chr3L 10298759 10298801 14 103 0.5 1.5 1.0 7.0 139 chr3L 10298662 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298801 intergenic not near genes chr3L_14_10295001 chr3L_10295001 RAL-235 1330 chr3L 10308745 10308773 chr3L 10308833 10308866 6 94 1.0 3.5 2.2 1.9 121 chr3L 10308745 intergenic not near genes chr3L 10308806 intergenic not near genes chr3L 10308866 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-235 1331 chr3L 10326262 10326301 chr3L 10326362 10326401 11 99 0.0 5.5 2.8 2.9 139 chr3L 10326262 intergenic CR45244 + chr3L 10326332 intergenic CR45244 + chr3L 10326401 intergenic CR45244 + chr3L_11_10325001 chr3L_10325001 RAL-235 1332 chr3L 10366283 10366312 chr3L 10366414 10366445 7 130 8.5 7.5 8.0 0.8 162 chr3L 10366283 5` UTR CR44327 + chr3L 10366364 5` UTR CR44327 + chr3L 10366445 5` UTR CR44327 + chr3L_7_10365001 chr3L_10365001 RAL-235 1333 chr3L 10381314 10381324 chr3L 10381412 10381413 4 94 2.5 0.0 1.2 1.8 99 chr3L 10381314 intergenic not near genes chr3L 10381364 intergenic not near genes chr3L 10381413 intergenic not near genes chr3L_4_10380001 chr3L_10380001 RAL-235 1334 chr3L 10386383 10386418 chr3L 10386475 10386515 10 95 4.0 7.0 5.5 1.5 132 chr3L 10386383 intergenic CR45245 + chr3L 10386449 5` UTR CR45245 + chr3L 10386515 5` UTR CR45245 + chr3L_10_10385001 chr3L_10385001 RAL-235 1335 chr3L 10414939 10414971 chr3L 10417318 10417356 Doc 11 2386 1.0 4.0 2.5 3.1 2417 chr3L 10414939 intergenic CG12362 + chr3L 10416148 intergenic not near genes chr3L 10417356 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-235 1336 chr3L 10417563 10417603 chr3L 10417643 10417673 6 75 5.0 4.0 4.5 1.1 110 chr3L 10417563 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417673 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-235 1337 chr3L 10450677 10450715 chr3L 10450777 10450805 14 97 0.0 7.5 3.8 2.9 128 chr3L 10450677 intergenic not near genes chr3L 10450741 intergenic not near genes chr3L 10450805 intergenic not near genes chr3L_14_10450001 chr3L_10450001 RAL-235 1338 chr3L 10538678 10538725 chr3L 10538770 10538824 9 91 3.0 4.5 3.8 1.9 146 chr3L 10538678 intron A2bp1 + chr3L 10538751 intron A2bp1 + chr3L 10538824 intron A2bp1 + chr3L_9_10535001 chr3L_10535001 RAL-235 1339 chr3L 10584260 10584302 chr3L 10584367 10584409 14 105 5.5 6.0 5.8 2.1 149 chr3L 10584260 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584409 intron A2bp1 + chr3L_14_10580001 chr3L_10580001 RAL-235 1340 chr3L 10603695 10603723 chr3L 10603905 10603933 11 206 1.0 1.0 1.0 5.5 238 chr3L 10603695 intergenic not near genes chr3L 10603814 intergenic not near genes chr3L 10603933 intergenic not near genes chr3L_11_10600001 chr3L_10600001 RAL-235 1341 chr3L 10614789 10614797 chr3L 10614877 10614896 4 94 0.0 5.0 2.5 1.1 107 chr3L 10614789 intergenic not near genes chr3L 10614842 intergenic not near genes chr3L 10614896 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-235 1342 chr3L 10658060 10658105 chr3L 10658157 10658202 14 95 0.5 7.0 3.8 2.9 142 chr3L 10658060 intron CG32066 - chr3L 10658131 intron CG32066 - chr3L 10658202 intron CG32066 - chr3L_14_10655001 chr3L_10655001 RAL-235 1343 chr3L 10658951 10658997 chr3L 10659251 10659288 7 295 5.5 0.0 2.8 1.8 337 chr3L 10658951 intron CG32066 - chr3L 10659120 intron CG32066 - chr3L 10659288 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-235 1344 chr3L 10729783 10729827 chr3L 10729881 10729890 15 95 7.5 0.0 3.8 3.1 107 chr3L 10729783 intergenic not near genes chr3L 10729836 intergenic not near genes chr3L 10729890 intergenic not near genes chr3L_15_10725001 chr3L_10725001 RAL-235 1345 chr3L 10735818 10735833 chr3L 10735927 10735942 7 109 0.0 9.5 4.8 1.2 124 chr3L 10735818 intergenic not near genes chr3L 10735880 intergenic not near genes chr3L 10735942 intergenic not near genes chr3L_7_10735001 chr3L_10735001 RAL-235 1346 chr3L 10745520 10745565 chr3L 10745620 10745665 18 96 5.5 1.5 3.5 4.0 145 chr3L 10745520 intergenic not near genes chr3L 10745592 intergenic not near genes chr3L 10745665 intergenic not near genes chr3L_18_10745001 chr3L_10745001 RAL-235 1347 chr3L 10753198 10753208 chr3L 10753422 10753437 7 231 5.0 3.5 4.2 1.3 239 chr3L 10753198 intergenic not near genes chr3L 10753318 intergenic not near genes chr3L 10753437 intergenic not near genes chr3L_7_10750001 chr3L_10750001 RAL-235 1348 chr3L 10770738 10770750 chr3L 10770834 10770846 6 93 0.0 3.5 1.8 2.1 108 chr3L 10770738 intergenic not near genes chr3L 10770792 intergenic not near genes chr3L 10770846 intergenic not near genes chr3L_6_10770001 chr3L_10770001 RAL-235 1349 chr3L 10868789 10868823 chr3L 10868886 10868920 6 94 0.0 2.5 1.2 2.7 131 chr3L 10868789 intron tna + chr3L 10868854 intron tna + chr3L 10868920 intron tna + chr3L_6_10865001 chr3L_10865001 RAL-235 1350 chr3L 10887365 10887380 chr3L 10887450 10887479 5 95 0.0 4.5 2.2 1.6 114 chr3L 10887365 intergenic not near genes chr3L 10887422 intergenic not near genes chr3L 10887479 intergenic not near genes chr3L_5_10885001 chr3L_10885001 RAL-235 1351 chr3L 11018556 11018578 chr3L 11018662 11018684 7 106 0.0 7.0 3.5 1.6 128 chr3L 11018556 intergenic not near genes chr3L 11018620 intergenic not near genes chr3L 11018684 intergenic not near genes chr3L_7_11015001 chr3L_11015001 RAL-235 1352 chr3L 11053644 11053680 chr3L 11053749 11053779 7 102 0.0 4.0 2.0 2.3 135 chr3L 11053644 intergenic CG7888 + chr3L 11053712 intergenic CG7888 + chr3L 11053779 intergenic CG7888 + chr3L_7_11050001 chr3L_11050001 RAL-235 1353 chr3L 11087059 11087085 chr3L 11088860 11088877 S-element 5 1800 4.0 3.5 3.8 1.0 1818 chr3L 11087059 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-235 1354 chr3L 11127906 11127959 chr3L 11128029 11128069 17 119 2.5 4.5 3.5 3.8 163 chr3L 11127906 intron CG42575 + chr3L 11127988 intron CG42575 + chr3L 11128069 intron CG42575 + chr3L_17_11125001 chr3L_11125001 RAL-235 1355 chr3L 11135508 11135802 chr3L 11135758 11135907 19 169 0.5 0.0 0.2 15.8 399 chr3L 11135508 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135907 intergenic CG32082 +,CG14143 + chr3L_19_11135001 chr3L_11135001 RAL-235 1356 chr3L 11157717 11157764 chr3L 11157855 11157901 10 134 4.0 4.5 4.2 1.9 184 chr3L 11157717 intron CG32082 + chr3L 11157809 intron CG32082 + chr3L 11157901 intron CG32082 + chr3L_10_11155001 chr3L_11155001 RAL-235 1357 chr3L 11187707 11187739 chr3L 11187798 11187840 16 100 0.5 3.0 1.8 5.7 133 chr3L 11187707 intron GlcAT-P - chr3L 11187774 intron GlcAT-P - chr3L 11187840 intron GlcAT-P - chr3L_16_11185001 chr3L_11185001 RAL-235 1358 chr3L 11232770 11232821 chr3L 11232875 11232926 10 108 34.0 34.0 34.0 0.3 156 chr3L 11232770 intergenic Ir68a - chr3L 11232848 intergenic Ir68a - chr3L 11232926 intergenic Ir68a - chr3L_10_11230001 chr3L_11230001 RAL-235 1359 chr3L 11241776 11241792 chr3L 11241873 11241894 8 98 0.5 7.0 3.8 1.7 118 chr3L 11241776 intergenic not near genes chr3L 11241835 intergenic not near genes chr3L 11241894 intergenic not near genes chr3L_8_11240001 chr3L_11240001 RAL-235 1360 chr3L 11264455 11264476 chr3L 11271424 11271448 17.6 5 6967 2.0 2.0 2.0 1.7 6993 chr3L 11264455 intergenic not near genes chr3L 11267952 intergenic not near genes chr3L 11271448 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-235 1361 chr3L 11304823 11304838 chr3L 11304935 11304947 5 113 0.0 0.0 0.0 5.0 124 chr3L 11304823 intergenic not near genes chr3L 11304885 intergenic not near genes chr3L 11304947 intergenic not near genes chr3L_5_11300001 chr3L_11300001 RAL-235 1362 chr3L 11329673 11329716 chr3L 11332892 11332926 jockey 7 3214 5.5 3.5 4.5 1.3 3253 chr3L 11329673 intergenic not near genes chr3L 11331300 intergenic not near genes chr3L 11332926 intergenic not near genes chr3L_7_11330001 chr3L_11330001 RAL-235 1363 chr3L 11471562 11471611 chr3L 11471659 11471709 21 96 4.5 3.0 3.8 4.4 147 chr3L 11471562 intergenic not near genes chr3L 11471636 intergenic not near genes chr3L 11471709 intergenic not near genes chr3L_21_11470001 chr3L_11470001 RAL-235 1364 chr3L 11474616 11474642 chr3L 11474725 11474736 7 106 2.5 1.0 1.8 2.5 120 chr3L 11474616 intergenic Vha16-2 + chr3L 11474676 intergenic Vha16-2 + chr3L 11474736 intergenic Vha16-2 + chr3L_7_11470001 chr3L_11470001 RAL-235 1365 chr3L 11474647 11474654 chr3L 11474716 11474747 4 88 1.5 1.0 1.2 1.8 100 chr3L 11474647 intergenic Vha16-2 + chr3L 11474697 intergenic Vha16-2 + chr3L 11474747 intergenic Vha16-2 + chr3L_4_11470001 chr3L_11470001 RAL-235 1366 chr3L 11579565 11579584 chr3L 11579666 11579708 6 117 3.0 2.5 2.8 1.6 143 chr3L 11579565 intergenic CG43390 - chr3L 11579636 intergenic CG43390 - chr3L 11579708 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-235 1367 chr3L 11659412 11659454 chr3L 11659757 11659789 4 340 5.0 6.0 5.5 0.6 377 chr3L 11659412 intron CG32085 - chr3L 11659600 intron CG32085 - chr3L 11659789 intron CG32085 - chr3L_4_11655001 chr3L_11655001 RAL-235 1368 chr3L 11673954 11673979 chr3L 11674050 11674074 9 95 6.0 0.0 3.0 2.2 120 chr3L 11673954 intron CG32085 - chr3L 11674014 intron CG32085 - chr3L 11674074 intron CG32085 - chr3L_9_11670001 chr3L_11670001 RAL-235 1369 chr3L 11678074 11678125 chr3L 11678181 11678232 15 106 2.0 3.5 2.8 3.9 158 chr3L 11678074 intron CG32085 - chr3L 11678153 intron CG32085 - chr3L 11678232 intron CG32085 - chr3L_15_11675001 chr3L_11675001 RAL-235 1370 chr3L 11723070 11723110 chr3L 11727884 11727924 Doc 16 4810 5.5 7.0 6.2 2.2 4854 chr3L 11723070 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727924 3` UTR Bmcp + chr3L_16_11725001 chr3L_11725001 RAL-235 1371 chr3L 11729657 11729700 chr3L 11729753 11729787 13 91 5.5 2.5 4.0 2.6 130 chr3L 11729657 exon CG32088 + chr3L 11729722 intron CG32088 + chr3L 11729787 exon CG32088 + chr3L_13_11725001 chr3L_11725001 RAL-235 1372 chr3L 11744009 11744020 chr3L 11744132 11744148 7 126 3.5 3.5 3.5 1.6 139 chr3L 11744009 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-235 1373 chr3L 11756014 11756064 chr3L 11756115 11756165 4 98 1.5 0.0 0.8 2.2 151 chr3L 11756014 intron CG6024 - chr3L 11756090 intron CG6024 - chr3L 11756165 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-235 1374 chr3L 11770974 11771015 chr3L 11771080 11771116 16 99 5.5 5.5 5.5 2.5 142 chr3L 11770974 exon Muc68D - chr3L 11771045 exon Muc68D - chr3L 11771116 exon Muc68D - chr3L_16_11770001 chr3L_11770001 RAL-235 1375 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028207 15.0 8.5 11.8 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-235 1376 chr3L 11810536 11810555 chr3L 11810634 11810653 5 97 0.0 3.5 1.8 1.8 117 chr3L 11810536 intron CG42255 - chr3L 11810594 intron CG42255 - chr3L 11810653 exon CG42255 - chr3L_5_11810001 chr3L_11810001 RAL-235 1377 chr3L 11811443 11811487 chr3L 11811535 11811584 14 94 4.0 6.0 5.0 2.3 141 chr3L 11811443 intron CG42255 - chr3L 11811514 intron CG42255 - chr3L 11811584 exon CG42255 - chr3L_14_11810001 chr3L_11810001 RAL-235 1378 chr3L 11816795 11816815 chr3L 11816915 11816936 7 120 6.0 12.0 9.0 0.7 141 chr3L 11816795 3` UTR CG5946 - chr3L 11816866 3` UTR CG5946 - chr3L 11816936 3` UTR CG5946 - chr3L_7_11815001 chr3L_11815001 RAL-235 1379 chr3L 11849312 11849354 chr3L 11849432 11849456 15 118 3.0 6.5 4.8 2.6 144 chr3L 11849312 intergenic not near genes chr3L 11849384 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_15_11845001 chr3L_11845001 RAL-235 1380 chr3L 11864552 11864585 chr3L 11865847 11865900 pogo 12 1306 3.0 6.5 4.8 2.1 1348 chr3L 11864552 intron CG44837 - chr3L 11865226 intron CG44837 - chr3L 11865900 intron CG44837 - chr3L_12_11865001 chr3L_11865001 RAL-235 1381 chr3L 11887238 11887288 chr3L 11887355 11887414 8 118 2.5 0.0 1.2 3.6 176 chr3L 11887238 intron CG44837 - chr3L 11887326 intron,3` UTR CG44837 -,CG5897 - chr3L 11887414 intron,3` UTR CG44837 -,CG5897 - chr3L_8_11885001 chr3L_11885001 RAL-235 1382 chr3L 12013903 12013933 chr3L 12014004 12014036 7 105 3.5 4.0 3.8 1.5 133 chr3L 12013903 intron rols - chr3L 12013970 intron rols - chr3L 12014036 intron rols - chr3L_7_12010001 chr3L_12010001 RAL-235 1383 chr3L 12034866 12034920 chr3L 12034963 12035017 18 94 3.0 5.5 4.2 3.5 151 chr3L 12034866 intron rols - chr3L 12034942 intron rols - chr3L 12035017 intron rols - chr3L_18_12030001 chr3L_12030001 RAL-235 1384 chr3L 12052691 12052738 chr3L 12052792 12052847 11 106 5.5 4.0 4.8 1.9 156 chr3L 12052691 intron rols - chr3L 12052769 intron rols - chr3L 12052847 intron rols - chr3L_11_12050001 chr3L_12050001 RAL-235 1385 chr3L 12067074 12067081 chr3L 12067173 12067180 5 99 0.0 0.0 0.0 5.0 106 chr3L 12067074 intergenic Sema-5c - chr3L 12067127 intergenic Sema-5c - chr3L 12067180 intergenic Sema-5c - chr3L_5_12065001 chr3L_12065001 RAL-235 1386 chr3L 12089061 12089112 chr3L 12089161 12089212 22 99 3.0 3.0 3.0 5.5 151 chr3L 12089061 exon CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089212 3` UTR CG17154 + chr3L_22_12085001 chr3L_12085001 RAL-235 1387 chr3L 12170775 12170790 chr3L 12170877 12170891 6 101 4.5 4.5 4.5 1.1 116 chr3L 12170775 intron Rh7 - chr3L 12170833 intron Rh7 - chr3L 12170891 intron Rh7 - chr3L_6_12170001 chr3L_12170001 RAL-235 1388 chr3L 12170791 12170824 chr3L 12170875 12170911 10 91 0.5 4.0 2.2 3.1 120 chr3L 12170791 intron Rh7 - chr3L 12170851 intron Rh7 - chr3L 12170911 intron Rh7 - chr3L_10_12170001 chr3L_12170001 RAL-235 1389 chr3L 12204370 12204418 chr3L 12204481 12204529 11 100 4.5 5.0 4.8 1.9 159 chr3L 12204370 3` UTR CG5626 - chr3L 12204450 intron CG5626 - chr3L 12204529 intron CG5626 - chr3L_11_12200001 chr3L_12200001 RAL-235 1390 chr3L 12225170 12225216 chr3L 12225287 12225332 6 115 1.0 0.0 0.5 4.0 162 chr3L 12225170 intron app - chr3L 12225251 intron app - chr3L 12225332 intron app - chr3L_6_12225001 chr3L_12225001 RAL-235 1391 chr3L 12304100 12304118 chr3L 12304171 12304186 6 74 4.5 3.5 4.0 1.2 86 chr3L 12304100 intergenic not near genes chr3L 12304143 intergenic not near genes chr3L 12304186 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-235 1392 chr3L 12312497 12312509 chr3L 12312570 12312606 6 85 3.0 6.0 4.5 1.1 109 chr3L 12312497 intergenic not near genes chr3L 12312552 intergenic not near genes chr3L 12312606 intergenic not near genes chr3L_6_12310001 chr3L_12310001 RAL-235 1393 chr3L 12353922 12353947 chr3L 12354031 12354056 5 102 0.5 2.0 1.2 2.3 134 chr3L 12353922 intergenic not near genes chr3L 12353989 intergenic not near genes chr3L 12354056 intergenic not near genes chr3L_5_12350001 chr3L_12350001 RAL-235 1394 chr3L 12369516 12369566 chr3L 12369626 12369676 23 108 6.0 2.5 4.2 4.4 160 chr3L 12369516 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369676 intron Ncc69 - chr3L_23_12365001 chr3L_12365001 RAL-235 1395 chr3L 12381523 12381547 chr3L 12381621 12381644 8 98 0.0 0.5 0.2 6.7 121 chr3L 12381523 intron Ncc69 - chr3L 12381584 intron Ncc69 - chr3L 12381644 intron Ncc69 - chr3L_8_12380001 chr3L_12380001 RAL-235 1396 chr3L 12388067 12388101 chr3L 12388156 12388160 22 96 4.0 6.5 5.2 3.5 93 chr3L 12388067 intron Ncc69 - chr3L 12388114 intron Ncc69 - chr3L 12388160 intron Ncc69 - chr3L_22_12385001 chr3L_12385001 RAL-235 1397 chr3L 12409810 12409816 chr3L 12409904 12409920 5 100 5.5 4.0 4.8 0.9 110 chr3L 12409810 intron CG32103 - chr3L 12409865 intron CG32103 - chr3L 12409920 intron CG32103 - chr3L_5_12405001 chr3L_12405001 RAL-235 1398 chr3L 12409817 12409839 chr3L 12409901 12409939 4 95 4.0 3.5 3.8 0.8 122 chr3L 12409817 intron CG32103 - chr3L 12409878 intron CG32103 - chr3L 12409939 intron CG32103 - chr3L_4_12405001 chr3L_12405001 RAL-235 1399 chr3L 12458483 12458508 chr3L 12458596 12458622 6 114 4.0 6.5 5.2 1.0 139 chr3L 12458483 intergenic not near genes chr3L 12458552 intergenic not near genes chr3L 12458622 intergenic not near genes chr3L_6_12455001 chr3L_12455001 RAL-235 1400 chr3L 12460317 12460344 chr3L 12460406 12460441 9 94 0.0 5.0 2.5 2.6 124 chr3L 12460317 intergenic not near genes chr3L 12460379 intergenic not near genes chr3L 12460441 intergenic not near genes chr3L_9_12460001 chr3L_12460001 RAL-235 1401 chr3L 12476275 12476319 chr3L 12476365 12476415 14 95 4.5 5.5 5.0 2.3 140 chr3L 12476275 intron CG10663 - chr3L 12476345 intron CG10663 - chr3L 12476415 intron CG10663 - chr3L_14_12475001 chr3L_12475001 RAL-235 1402 chr3L 12541512 12541525 chr3L 12541612 12541624 4 102 0.0 0.0 0.0 4.0 112 chr3L 12541512 intron sowah - chr3L 12541568 intron sowah - chr3L 12541624 intron sowah - chr3L_4_12540001 chr3L_12540001 RAL-235 1403 chr3L 12555616 12555653 chr3L 12555714 12555766 13 107 8.0 3.0 5.5 2.0 150 chr3L 12555616 intron sowah - chr3L 12555691 intron sowah - chr3L 12555766 intron sowah - chr3L_13_12555001 chr3L_12555001 RAL-235 1404 chr3L 12605710 12605742 chr3L 12605807 12605842 7 99 5.0 1.5 3.2 1.7 132 chr3L 12605710 intergenic not near genes chr3L 12605776 intergenic not near genes chr3L 12605842 intergenic not near genes chr3L_7_12605001 chr3L_12605001 RAL-235 1405 chr3L 12610975 12611028 chr3L 12611241 12611289 19 264 2.0 5.0 3.5 4.2 314 chr3L 12610975 intron caup + chr3L 12611132 intron caup + chr3L 12611289 intron caup + chr3L_19_12610001 chr3L_12610001 RAL-235 1406 chr3L 12626135 12626164 chr3L 12626264 12626282 16 126 2.5 3.5 3.0 4.0 147 chr3L 12626135 intergenic not near genes chr3L 12626208 intergenic not near genes chr3L 12626282 intergenic not near genes chr3L_16_12625001 chr3L_12625001 RAL-235 1407 chr3L 12666906 12666948 chr3L 12667037 12667080 11 129 8.5 0.0 4.2 2.1 174 chr3L 12666906 intergenic not near genes chr3L 12666993 intergenic not near genes chr3L 12667080 intergenic not near genes chr3L_11_12665001 chr3L_12665001 RAL-235 1408 chr3L 12691390 12691410 chr3L 12691604 12691627 6 216 1.5 7.5 4.5 1.1 237 chr3L 12691390 intergenic not near genes chr3L 12691508 intergenic not near genes chr3L 12691627 intergenic not near genes chr3L_6_12690001 chr3L_12690001 RAL-235 1409 chr3L 12720307 12720356 chr3L 12720412 12720450 26 100 3.5 3.5 3.5 5.8 143 chr3L 12720307 intergenic not near genes chr3L 12720378 intergenic not near genes chr3L 12720450 intergenic not near genes chr3L_26_12720001 chr3L_12720001 RAL-235 1410 chr3L 12801995 12802009 chr3L 12802089 12802105 5 92 1.0 9.5 5.2 0.8 110 chr3L 12801995 intron Atg1 - chr3L 12802050 intron Atg1 - chr3L 12802105 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-235 1411 chr3L 12857986 12858000 chr3L 12858101 12858104 5 113 1.0 4.5 2.8 1.3 118 chr3L 12857986 3` UTR CG32107 - chr3L 12858045 3` UTR CG32107 - chr3L 12858104 3` UTR CG32107 - chr3L_5_12855001 chr3L_12855001 RAL-235 1412 chr3L 12868029 12868034 chr3L 12868131 12868131 4 100 8.5 4.5 6.5 0.5 102 chr3L 12868029 intergenic not near genes chr3L 12868080 intergenic not near genes chr3L 12868131 intergenic not near genes chr3L_4_12865001 chr3L_12865001 RAL-235 1413 chr3L 12874934 12874962 chr3L 12877226 12877274 jockey 9 2307 1.5 4.5 3.0 2.2 2340 chr3L 12874934 intergenic not near genes chr3L 12876104 intergenic not near genes chr3L 12877274 intergenic not near genes chr3L_9_12875001 chr3L_12875001 RAL-235 1414 chr3L 12894792 12894812 chr3L 12894884 12894910 4 95 7.5 5.5 6.5 0.5 118 chr3L 12894792 intergenic CG14118 + chr3L 12894851 intergenic CG14118 + chr3L 12894910 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-235 1415 chr3L 12919280 12919299 chr3L 12924748 12924767 Rt1c 4 5474 4.5 0.0 2.2 1.2 5487 chr3L 12919280 intergenic not near genes chr3L 12922024 intergenic not near genes chr3L 12924767 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-235 1416 chr3L 12919304 12919312 chr3L 12924739 12924740 Rt1c 4 5444 2.5 0.0 1.2 1.8 5436 chr3L 12919304 intergenic not near genes chr3L 12922022 intergenic not near genes chr3L 12924740 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-235 1417 chr3L 12957774 12957815 chr3L 12962275 12962317 copia 15 4497 7.0 6.5 6.8 1.9 4543 chr3L 12957774 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962317 intergenic not near genes chr3L_15_12960001 chr3L_12960001 RAL-235 1418 chr3L 13085054 13085084 chr3L 13085134 13085183 8 94 2.0 6.0 4.0 1.6 129 chr3L 13085054 intergenic not near genes chr3L 13085118 intergenic not near genes chr3L 13085183 intergenic not near genes chr3L_8_13085001 chr3L_13085001 RAL-235 1419 chr3L 13128037 13128083 chr3L 13128226 13128226 9 182 2.5 3.0 2.8 2.4 189 chr3L 13128037 intergenic not near genes chr3L 13128132 intergenic not near genes chr3L 13128226 intergenic not near genes chr3L_9_13125001 chr3L_13125001 RAL-235 1420 chr3L 13142131 13142174 chr3L 13142262 13142307 14 132 5.0 5.5 5.2 2.3 176 chr3L 13142131 intergenic not near genes chr3L 13142219 intergenic not near genes chr3L 13142307 intergenic not near genes chr3L_14_13140001 chr3L_13140001 RAL-235 1421 chr3L 13174248 13174271 chr3L 13174360 13174383 5 112 1.5 6.0 3.8 1.0 135 chr3L 13174248 intergenic snky + chr3L 13174316 intergenic snky + chr3L 13174383 intergenic snky + chr3L_5_13170001 chr3L_13170001 RAL-235 1422 chr3L 13182432 13182466 chr3L 13182530 13182564 4 94 6.0 0.5 3.2 1.0 132 chr3L 13182432 intergenic not near genes chr3L 13182498 intergenic not near genes chr3L 13182564 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-235 1423 chr3L 13200600 13200612 chr3L 13200702 13200714 INE-1 5 102 5.5 17.0 11.2 0.4 114 chr3L 13200600 intergenic not near genes chr3L 13200657 intergenic not near genes chr3L 13200714 intergenic not near genes chr3L_5_13200001 chr3L_13200001 RAL-235 1424 chr3L 13294382 13294408 chr3L 13294734 13294735 6 346 4.5 3.0 3.8 1.2 353 chr3L 13294382 intergenic not near genes chr3L 13294558 intergenic not near genes chr3L 13294735 intergenic not near genes chr3L_6_13290001 chr3L_13290001 RAL-235 1425 chr3L 13296500 13296542 chr3L 13296611 13296653 20 109 7.0 6.5 6.8 2.6 153 chr3L 13296500 intergenic Sfp70A4 - chr3L 13296576 3` UTR Sfp70A4 - chr3L 13296653 3` UTR Sfp70A4 - chr3L_20_13295001 chr3L_13295001 RAL-235 1426 chr3L 13301250 13301260 chr3L 13301339 13301351 7 93 0.0 0.5 0.2 5.8 101 chr3L 13301250 intergenic SP + chr3L 13301300 intergenic SP + chr3L 13301351 intergenic SP + chr3L_7_13300001 chr3L_13300001 RAL-235 1427 chr3L 13400522 13400528 chr3L 13400618 13400624 4 96 1.5 6.5 4.0 0.8 102 chr3L 13400522 intron sens - chr3L 13400573 intron sens - chr3L 13400624 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-235 1428 chr3L 13400532 13400543 chr3L 13400613 13400636 5 92 1.5 6.0 3.8 1.0 104 chr3L 13400532 intron sens - chr3L 13400584 intron sens - chr3L 13400636 intron sens - chr3L_5_13400001 chr3L_13400001 RAL-235 1429 chr3L 13402300 13402314 chr3L 13402376 13402415 6 94 0.5 1.0 0.8 3.3 115 chr3L 13402300 intergenic not near genes chr3L 13402358 intergenic not near genes chr3L 13402415 intergenic not near genes chr3L_6_13400001 chr3L_13400001 RAL-235 1430 chr3L 13525144 13525185 chr3L 13532950 13532954 roo 11 7807 6.5 4.5 5.5 1.7 7810 chr3L 13525144 intergenic not near genes chr3L 13529049 intergenic not near genes chr3L 13532954 intergenic not near genes chr3L_11_13525001 chr3L_13525001 RAL-235 1431 chr3L 13646638 13646676 chr3L 13646734 13646772 4 90 4.0 1.5 2.8 1.1 134 chr3L 13646638 intron bru-3 - chr3L 13646705 intron bru-3 - chr3L 13646772 intron bru-3 - chr3L_4_13645001 chr3L_13645001 RAL-235 1432 chr3L 13669890 13669924 chr3L 13669988 13670032 17 104 8.5 4.5 6.5 2.3 142 chr3L 13669890 intron bru-3 - chr3L 13669961 intron bru-3 - chr3L 13670032 intron bru-3 - chr3L_17_13665001 chr3L_13665001 RAL-235 1433 chr3L 13677509 13677561 chr3L 13677606 13677655 15 94 4.0 6.5 5.2 2.4 146 chr3L 13677509 intron bru-3 - chr3L 13677582 intron bru-3 - chr3L 13677655 intron bru-3 - chr3L_15_13675001 chr3L_13675001 RAL-235 1434 chr3L 13740014 13740050 chr3L 13740124 13740153 7 108 5.5 4.0 4.8 1.2 139 chr3L 13740014 intron bru-3 - chr3L 13740084 intron bru-3 - chr3L 13740153 intron bru-3 - chr3L_7_13740001 chr3L_13740001 RAL-235 1435 chr3L 13759018 13759046 chr3L 13759147 13759167 4 122 4.5 2.5 3.5 0.9 149 chr3L 13759018 intron bru-3 - chr3L 13759092 intron bru-3 - chr3L 13759167 intron bru-3 - chr3L_4_13755001 chr3L_13755001 RAL-235 1436 chr3L 13766889 13766918 chr3L 13767007 13767026 5 116 4.5 4.0 4.2 1.0 137 chr3L 13766889 intron bru-3 - chr3L 13766958 intron bru-3 - chr3L 13767026 intron bru-3 - chr3L_5_13765001 chr3L_13765001 RAL-235 1437 chr3L 13800051 13800082 chr3L 13800373 13800404 5 322 3.5 6.0 4.8 0.9 353 chr3L 13800051 intron bru-3 - chr3L 13800228 intron bru-3 - chr3L 13800404 intron bru-3 - chr3L_5_13800001 chr3L_13800001 RAL-235 1438 chr3L 13804543 13804576 chr3L 13822849 13822867 roo 10 18301 4.0 9.0 6.5 1.3 18324 chr3L 13804543 intergenic not near genes chr3L 13813705 intergenic not near genes chr3L 13822867 intergenic not near genes chr3L_10_13810001 chr3L_13810001 RAL-235 1439 chr3L 13884360 13884384 chr3L 13884471 13884495 8 110 5.5 6.5 6.0 1.1 135 chr3L 13884360 intron dysc - chr3L 13884428 intron dysc - chr3L 13884495 intron dysc - chr3L_8_13880001 chr3L_13880001 RAL-235 1440 chr3L 13901553 13901576 chr3L 13901648 13901673 4 96 8.0 1.5 4.8 0.7 120 chr3L 13901553 intron dysc - chr3L 13901613 intron dysc - chr3L 13901673 intron dysc - chr3L_4_13900001 chr3L_13900001 RAL-235 1441 chr3L 13901579 13901601 chr3L 13901646 13901678 7 87 3.5 1.5 2.5 2.0 99 chr3L 13901579 intron dysc - chr3L 13901628 intron dysc - chr3L 13901678 intron dysc - chr3L_7_13900001 chr3L_13900001 RAL-235 1442 chr3L 13920399 13920427 chr3L 13920499 13920505 12 97 6.5 4.0 5.2 1.9 106 chr3L 13920399 intron Rgl - chr3L 13920452 intron Rgl - chr3L 13920505 intron Rgl - chr3L_12_13920001 chr3L_13920001 RAL-235 1443 chr3L 13921361 13921408 chr3L 13921462 13921509 8 95 5.5 8.0 6.8 1.0 148 chr3L 13921361 intron Rgl - chr3L 13921435 intron Rgl - chr3L 13921509 intron Rgl - chr3L_8_13920001 chr3L_13920001 RAL-235 1444 chr3L 13994000 13994004 chr3L 13994094 13994099 5 98 6.0 4.0 5.0 0.8 99 chr3L 13994000 intergenic 26-29-p + chr3L 13994050 intergenic 26-29-p + chr3L 13994099 intergenic 26-29-p + chr3L_5_13990001 chr3L_13990001 RAL-235 1445 chr3L 14061646 14061687 chr3L 14061755 14061793 5 104 3.5 1.0 2.2 1.6 147 chr3L 14061646 intron CG32138 + chr3L 14061720 intron CG32138 + chr3L 14061793 intron CG32138 + chr3L_5_14060001 chr3L_14060001 RAL-235 1446 chr3L 14076057 14076107 chr3L 14076155 14076206 11 96 0.0 5.0 2.5 3.1 149 chr3L 14076057 3` UTR,intron Pex1 +,btl + chr3L 14076132 intron btl + chr3L 14076206 intron btl + chr3L_11_14075001 chr3L_14075001 RAL-235 1447 chr3L 14092729 14092751 chr3L 14092822 14092829 7 96 8.5 1.0 4.8 1.2 100 chr3L 14092729 intergenic not near genes chr3L 14092779 intergenic not near genes chr3L 14092829 intergenic not near genes chr3L_7_14090001 chr3L_14090001 RAL-235 1448 chr3L 14135992 14136033 chr3L 14136092 14136112 5 96 4.0 2.5 3.2 1.2 120 chr3L 14135992 intergenic not near genes chr3L 14136052 intergenic not near genes chr3L 14136112 intergenic not near genes chr3L_5_14135001 chr3L_14135001 RAL-235 1449 chr3L 14194702 14194741 chr3L 14194798 14194837 12 91 5.5 4.0 4.8 2.1 135 chr3L 14194702 intron nuf + chr3L 14194770 intron nuf + chr3L 14194837 intron nuf + chr3L_12_14190001 chr3L_14190001 RAL-235 1450 chr3L 14245560 14245581 chr3L 14245668 14245694 1360 6 112 3.5 5.5 4.5 1.1 134 chr3L 14245560 3` UTR CR44561 - chr3L 14245627 3` UTR CR44561 - chr3L 14245694 intergenic CR44561 -,CR44560 + chr3L_6_14245001 chr3L_14245001 RAL-235 1451 chr3L 14245587 14245594 chr3L 14245659 14245681 1360 5 96 3.5 5.5 4.5 0.9 94 chr3L 14245587 3` UTR CR44561 - chr3L 14245634 3` UTR CR44561 - chr3L 14245681 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-235 1452 chr3L 14295970 14295999 chr3L 14296476 14296503 roo 5 503 2.5 9.0 5.8 0.7 533 chr3L 14295970 intron fz + chr3L 14296236 intron fz + chr3L 14296503 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-235 1453 chr3L 14296001 14296014 chr3L 14296474 14296495 roo 4 485 1.5 9.0 5.2 0.6 494 chr3L 14296001 intron fz + chr3L 14296248 intron fz + chr3L 14296495 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-235 1454 chr3L 14326955 14326993 chr3L 14327100 14327138 8 153 3.0 3.0 3.0 2.0 183 chr3L 14326955 intron fz + chr3L 14327046 intron fz + chr3L 14327138 intron fz + chr3L_8_14325001 chr3L_14325001 RAL-235 1455 chr3L 14356514 14356553 chr3L 14356606 14356642 5 91 4.5 4.5 4.5 0.9 128 chr3L 14356514 intron fz + chr3L 14356578 intron fz + chr3L 14356642 intron fz + chr3L_5_14355001 chr3L_14355001 RAL-235 1456 chr3L 14439216 14439247 chr3L 14439383 14439428 6 175 2.5 5.0 3.8 1.2 212 chr3L 14439216 intron bbg - chr3L 14439322 intron bbg - chr3L 14439428 intron bbg - chr3L_6_14435001 chr3L_14435001 RAL-235 1457 chr3L 14462877 14462911 chr3L 14462985 14463018 15 107 0.0 4.0 2.0 5.0 141 chr3L 14462877 intron bbg - chr3L 14462948 intron bbg - chr3L 14463018 intron bbg - chr3L_15_14460001 chr3L_14460001 RAL-235 1458 chr3L 14468430 14468477 chr3L 14473656 14473692 copia 20 5224 4.0 6.0 5.0 3.3 5262 chr3L 14468430 intron bbg - chr3L 14471061 intron bbg - chr3L 14473692 intron bbg - chr3L_20_14470001 chr3L_14470001 RAL-235 1459 chr3L 14522088 14522130 chr3L 14522207 14522249 10 117 2.5 6.5 4.5 1.8 161 chr3L 14522088 intron bbg - chr3L 14522168 intron bbg - chr3L 14522249 intron bbg - chr3L_10_14520001 chr3L_14520001 RAL-235 1460 chr3L 14531470 14531525 chr3L 14531627 14531665 14 148 4.0 4.0 4.0 2.8 195 chr3L 14531470 intron bbg - chr3L 14531568 intron bbg - chr3L 14531665 intron bbg - chr3L_14_14530001 chr3L_14530001 RAL-235 1461 chr3L 14553315 14553349 chr3L 14553827 14553861 13 510 2.0 4.0 3.0 3.2 546 chr3L 14553315 intergenic not near genes chr3L 14553588 intergenic not near genes chr3L 14553861 intergenic not near genes chr3L_13_14550001 chr3L_14550001 RAL-235 1462 chr3L 14596126 14596139 chr3L 14596226 14596239 5 99 0.5 1.0 0.8 2.8 113 chr3L 14596126 intron HGTX - chr3L 14596182 intron HGTX - chr3L 14596239 intron HGTX - chr3L_5_14595001 chr3L_14595001 RAL-235 1463 chr3L 14603002 14603076 chr3L 14603130 14603173 5 100 0.0 0.0 0.0 5.0 171 chr3L 14603002 intergenic not near genes chr3L 14603088 intergenic not near genes chr3L 14603173 intergenic not near genes chr3L_5_14600001 chr3L_14600001 RAL-235 1464 chr3L 14608061 14608105 chr3L 14608153 14608168 8 91 5.0 4.0 4.5 1.5 107 chr3L 14608061 intergenic not near genes chr3L 14608114 intergenic not near genes chr3L 14608168 intergenic not near genes chr3L_8_14605001 chr3L_14605001 RAL-235 1465 chr3L 14702007 14702020 chr3L 14702097 14702119 4 94 0.0 4.0 2.0 1.3 112 chr3L 14702007 intron ome + chr3L 14702063 intron ome + chr3L 14702119 intron ome + chr3L_4_14700001 chr3L_14700001 RAL-235 1466 chr3L 14724811 14724831 chr3L 14724914 14724935 5 102 0.0 8.5 4.2 1.0 124 chr3L 14724811 intron ome + chr3L 14724873 intron ome + chr3L 14724935 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-235 1467 chr3L 14725591 14725615 chr3L 14728605 14728614 Doc 4 3010 0.0 9.0 4.5 0.7 3023 chr3L 14725591 intron ome + chr3L 14727102 intron ome + chr3L 14728614 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-235 1468 chr3L 14729494 14729526 chr3L 14729627 14729659 13 130 6.5 0.5 3.5 2.9 165 chr3L 14729494 intron ome + chr3L 14729576 intron ome + chr3L 14729659 intron ome + chr3L_13_14725001 chr3L_14725001 RAL-235 1469 chr3L 14731318 14731344 chr3L 14731734 14731782 8 432 3.5 4.5 4.0 1.6 464 chr3L 14731318 intron ome + chr3L 14731550 intron ome + chr3L 14731782 intron ome + chr3L_8_14730001 chr3L_14730001 RAL-235 1470 chr3L 14738935 14738948 chr3L 14739038 14739048 7 101 0.0 8.5 4.2 1.3 113 chr3L 14738935 intron ome + chr3L 14738992 intron ome + chr3L 14739048 intron ome + chr3L_7_14735001 chr3L_14735001 RAL-235 1471 chr3L 14738949 14738963 chr3L 14739037 14739066 6 100 0.0 8.0 4.0 1.2 117 chr3L 14738949 intron ome + chr3L 14739008 intron ome + chr3L 14739066 intron ome + chr3L_6_14735001 chr3L_14735001 RAL-235 1472 chr3L 14809167 14809218 chr3L 14809268 14809319 20 98 3.0 4.0 3.5 4.4 152 chr3L 14809167 intron CG17839 + chr3L 14809243 intron CG17839 + chr3L 14809319 intron CG17839 + chr3L_20_14805001 chr3L_14805001 RAL-235 1473 chr3L 14912165 14912212 chr3L 14912267 14912314 16 100 4.5 3.5 4.0 3.2 149 chr3L 14912165 intron DCX-EMAP + chr3L 14912240 intron DCX-EMAP + chr3L 14912314 intron DCX-EMAP + chr3L_16_14910001 chr3L_14910001 RAL-235 1474 chr3L 15048113 15048163 chr3L 15048457 15048507 13 348 44.5 28.0 36.2 0.3 394 chr3L 15048113 intron Sytbeta - chr3L 15048310 intron Sytbeta - chr3L 15048507 intron Sytbeta - chr3L_13_15045001 chr3L_15045001 RAL-235 1475 chr3L 15053428 15053433 chr3L 15053787 15053792 5 359 1.5 14.5 8.0 0.6 364 chr3L 15053428 intron Sytbeta - chr3L 15053610 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053792 intron,3` UTR Sytbeta -,CG18649 - chr3L_5_15050001 chr3L_15050001 RAL-235 1476 chr3L 15085028 15085084 chr3L 15086214 15086254 1360 11 1177 2.0 5.5 3.8 2.3 1226 chr3L 15085028 intron cp309 - chr3L 15085641 intron cp309 - chr3L 15086254 intron cp309 - chr3L_11_15085001 chr3L_15085001 RAL-235 1477 chr3L 15219723 15219770 chr3L 15219825 15219872 8 101 5.5 4.5 5.0 1.3 149 chr3L 15219723 intergenic not near genes chr3L 15219798 intergenic not near genes chr3L 15219872 intergenic not near genes chr3L_8_15215001 chr3L_15215001 RAL-235 1478 chr3L 15227895 15227912 chr3L 15227992 15227992 5 94 0.0 11.0 5.5 0.8 97 chr3L 15227895 intergenic not near genes chr3L 15227944 intergenic not near genes chr3L 15227992 intergenic not near genes chr3L_5_15225001 chr3L_15225001 RAL-235 1479 chr3L 15232509 15232519 chr3L 15232595 15232620 6 98 7.5 5.5 6.5 0.8 111 chr3L 15232509 intergenic not near genes chr3L 15232564 intergenic not near genes chr3L 15232620 intergenic not near genes chr3L_6_15230001 chr3L_15230001 RAL-235 1480 chr3L 15257412 15257434 chr3L 15257645 15257662 5 232 1.5 2.0 1.8 1.8 250 chr3L 15257412 intergenic not near genes chr3L 15257537 intergenic not near genes chr3L 15257662 intergenic not near genes chr3L_5_15255001 chr3L_15255001 RAL-235 1481 chr3L 15295752 15295800 chr3L 15298615 15298663 gypsy5 17 2862 6.5 5.5 6.0 2.4 2911 chr3L 15295752 intergenic not near genes chr3L 15297208 intergenic not near genes chr3L 15298663 intergenic Best4 + chr3L_17_15295001 chr3L_15295001 RAL-235 1482 chr3L 15327198 15327249 chr3L 15327294 15327318 11 88 4.5 5.0 4.8 1.9 120 chr3L 15327198 intergenic not near genes chr3L 15327258 intergenic not near genes chr3L 15327318 intergenic not near genes chr3L_11_15325001 chr3L_15325001 RAL-235 1483 chr3L 15333121 15333169 chr3L 15333221 15333271 15 95 1.0 1.0 1.0 7.5 150 chr3L 15333121 intergenic CR43247 + chr3L 15333196 intergenic CR43247 + chr3L 15333271 intergenic CR43247 + chr3L_15_15330001 chr3L_15330001 RAL-235 1484 chr3L 15348115 15348137 chr3L 15348283 15348315 5 170 1.5 9.0 5.2 0.8 200 chr3L 15348115 intergenic not near genes chr3L 15348215 intergenic not near genes chr3L 15348315 intergenic not near genes chr3L_5_15345001 chr3L_15345001 RAL-235 1485 chr3L 15348139 15348142 chr3L 15348281 15348304 4 157 1.0 9.0 5.0 0.7 165 chr3L 15348139 intergenic not near genes chr3L 15348222 intergenic not near genes chr3L 15348304 intergenic not near genes chr3L_4_15345001 chr3L_15345001 RAL-235 1486 chr3L 15384944 15384989 chr3L 15385092 15385131 7 139 3.5 4.5 4.0 1.4 187 chr3L 15384944 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385131 intergenic not near genes chr3L_7_15385001 chr3L_15385001 RAL-235 1487 chr3L 15406004 15406052 chr3L 15406106 15406134 8 97 2.0 4.5 3.2 1.9 130 chr3L 15406004 intergenic not near genes chr3L 15406069 intergenic not near genes chr3L 15406134 intergenic not near genes chr3L_8_15405001 chr3L_15405001 RAL-235 1488 chr3L 15423743 15423783 chr3L 15426607 15426647 opus 14 2864 4.0 5.0 4.5 2.5 2904 chr3L 15423743 intergenic not near genes chr3L 15425195 intergenic not near genes chr3L 15426647 intergenic not near genes chr3L_14_15425001 chr3L_15425001 RAL-235 1489 chr3L 15466023 15466028 chr3L 15466125 15466128 4 102 8.5 0.0 4.2 0.8 105 chr3L 15466023 intergenic not near genes chr3L 15466076 intergenic not near genes chr3L 15466128 intergenic not near genes chr3L_4_15465001 chr3L_15465001 RAL-235 1490 chr3L 15466030 15466131 chr3L 15466120 15466237 8 102 0.0 0.0 0.0 8.0 207 chr3L 15466030 intergenic not near genes chr3L 15466134 intergenic not near genes chr3L 15466237 intergenic not near genes chr3L_8_15465001 chr3L_15465001 RAL-235 1491 chr3L 15466501 15466553 chr3L 15466605 15466623 6 96 0.5 2.5 1.5 2.4 122 chr3L 15466501 intergenic not near genes chr3L 15466562 intergenic not near genes chr3L 15466623 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-235 1492 chr3L 15472649 15472674 chr3L 15472720 15472724 6 77 12.5 13.0 12.8 0.4 75 chr3L 15472649 exon CG7804 - chr3L 15472686 exon CG7804 - chr3L 15472724 exon CG7804 - chr3L_6_15470001 chr3L_15470001 RAL-235 1493 chr3L 15541600 15541652 chr3L 15541711 15541763 14 108 2.5 1.5 2.0 4.7 163 chr3L 15541600 intron CrebA + chr3L 15541682 intron CrebA + chr3L 15541763 intron CrebA + chr3L_14_15540001 chr3L_15540001 RAL-235 1494 chr3L 15554903 15554931 chr3L 15556710 15556738 S-element 10 1805 10.5 9.5 10.0 0.9 1835 chr3L 15554903 intron AGO2 + chr3L 15555820 intron AGO2 + chr3L 15556738 intron AGO2 + chr3L_10_15555001 chr3L_15555001 RAL-235 1495 chr3L 15554935 15554951 chr3L 15556707 15556757 S-element 8 1798 6.0 9.0 7.5 0.9 1822 chr3L 15554935 intron AGO2 + chr3L 15555846 intron AGO2 + chr3L 15556757 intron AGO2 + chr3L_8_15555001 chr3L_15555001 RAL-235 1496 chr3L 15638007 15638037 chr3L 15638164 15638176 8 152 4.5 2.0 3.2 1.9 169 chr3L 15638007 intron comm3 - chr3L 15638092 intron comm3 - chr3L 15638176 intron comm3 - chr3L_8_15635001 chr3L_15635001 RAL-235 1497 chr3L 15679375 15679416 chr3L 15679546 15679586 16 176 4.0 5.5 4.8 2.8 211 chr3L 15679375 intergenic CG7304 + chr3L 15679480 intergenic CG7304 + chr3L 15679586 intergenic CG7304 + chr3L_16_15675001 chr3L_15675001 RAL-235 1498 chr3L 15691396 15691447 chr3L 15691498 15691526 13 97 0.5 5.0 2.8 3.4 130 chr3L 15691396 intron CG34451 - chr3L 15691461 intron CG34451 - chr3L 15691526 intron CG34451 - chr3L_13_15690001 chr3L_15690001 RAL-235 1499 chr3L 15756852 15756870 chr3L 15756962 15756962 4 106 4.0 1.0 2.5 1.1 110 chr3L 15756852 intergenic not near genes chr3L 15756907 intergenic not near genes chr3L 15756962 intergenic not near genes chr3L_4_15755001 chr3L_15755001 RAL-235 1500 chr3L 15760702 15760714 chr3L 15760775 15760808 4 92 1.0 2.5 1.8 1.4 106 chr3L 15760702 intergenic not near genes chr3L 15760755 intergenic not near genes chr3L 15760808 intergenic not near genes chr3L_4_15760001 chr3L_15760001 RAL-235 1501 chr3L 15778498 15778549 chr3L 15778669 15778720 12 167 6.0 4.0 5.0 2.0 222 chr3L 15778498 intergenic not near genes chr3L 15778609 intergenic not near genes chr3L 15778720 intergenic not near genes chr3L_12_15775001 chr3L_15775001 RAL-235 1502 chr3L 15781669 15781682 chr3L 15781838 15781845 4 168 0.0 0.0 0.0 4.0 176 chr3L 15781669 intergenic not near genes chr3L 15781757 intergenic not near genes chr3L 15781845 intergenic not near genes chr3L_4_15780001 chr3L_15780001 RAL-235 1503 chr3L 15784548 15784578 chr3L 15784663 15784682 5 113 5.5 0.5 3.0 1.2 134 chr3L 15784548 intergenic not near genes chr3L 15784615 intergenic not near genes chr3L 15784682 intergenic not near genes chr3L_5_15780001 chr3L_15780001 RAL-235 1504 chr3L 15871573 15871617 chr3L 15871677 15871715 11 101 4.0 0.0 2.0 3.7 142 chr3L 15871573 intron pHCl - chr3L 15871644 intron pHCl - chr3L 15871715 intron pHCl - chr3L_11_15870001 chr3L_15870001 RAL-235 1505 chr3L 15883188 15883224 chr3L 15883501 15883536 9 310 5.0 4.0 4.5 1.6 348 chr3L 15883188 intron pHCl - chr3L 15883362 intron pHCl - chr3L 15883536 intron pHCl - chr3L_9_15880001 chr3L_15880001 RAL-235 1506 chr3L 15916830 15916859 chr3L 15916927 15916948 11 92 4.0 1.5 2.8 2.9 118 chr3L 15916830 intron sff - chr3L 15916889 intron sff - chr3L 15916948 intron sff - chr3L_11_15915001 chr3L_15915001 RAL-235 1507 chr3L 15929186 15929224 chr3L 15938353 15938386 roo 17 9166 8.0 7.0 7.5 2.0 9200 chr3L 15929186 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938386 intron Pka-C3 - chr3L_17_15930001 chr3L_15930001 RAL-235 1508 chr3L 15946485 15946492 chr3L 15946590 15946598 4 105 8.5 0.0 4.2 0.8 113 chr3L 15946485 intron Pka-C3 - chr3L 15946542 intron Pka-C3 - chr3L 15946598 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-235 1509 chr3L 15958903 15958927 chr3L 15958974 15958974 6 62 5.0 2.5 3.8 1.2 71 chr3L 15958903 5` UTR CG17032 + chr3L 15958938 5` UTR CG17032 + chr3L 15958974 5` UTR CG17032 + chr3L_6_15955001 chr3L_15955001 RAL-235 1510 chr3L 16158808 16158814 chr3L 16158913 16158919 4 104 0.5 9.5 5.0 0.7 111 chr3L 16158808 intron CG5151 - chr3L 16158864 intron CG5151 - chr3L 16158919 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-235 1511 chr3L 16158815 16158837 chr3L 16158900 16158941 7 97 0.5 5.5 3.0 1.8 126 chr3L 16158815 intron CG5151 - chr3L 16158878 intron CG5151 - chr3L 16158941 intron CG5151 - chr3L_7_16155001 chr3L_16155001 RAL-235 1512 chr3L 16184094 16184137 chr3L 16188933 16188964 X-element 16 4835 7.0 5.5 6.2 2.2 4870 chr3L 16184094 intergenic not near genes chr3L 16186529 intergenic not near genes chr3L 16188964 intergenic not near genes chr3L_16_16185001 chr3L_16185001 RAL-235 1513 chr3L 16198371 16198414 chr3L 16198473 16198501 6 98 4.5 5.5 5.0 1.0 130 chr3L 16198371 intron CG33687 + chr3L 16198436 exon CG33687 + chr3L 16198501 exon CG33687 + chr3L_6_16195001 chr3L_16195001 RAL-235 1514 chr3L 16212805 16212844 chr3L 16212916 16212945 21 106 9.0 1.5 5.2 3.4 140 chr3L 16212805 intergenic CG13073 - chr3L 16212875 intergenic CG13073 - chr3L 16212945 intergenic CG13073 - chr3L_21_16210001 chr3L_16210001 RAL-235 1515 chr3L 16236328 16236368 chr3L 16236463 16236485 9 131 3.0 4.0 3.5 2.0 157 chr3L 16236328 3` UTR l(3)72Dp + chr3L 16236406 3` UTR l(3)72Dp + chr3L 16236485 3` UTR l(3)72Dp + chr3L_9_16235001 chr3L_16235001 RAL-235 1516 chr3L 16427079 16427122 chr3L 16427181 16427193 12 93 5.0 4.0 4.5 2.2 114 chr3L 16427079 intron,intron CG33158 +,dsx-c73A - chr3L 16427136 intron,intron CG33158 +,dsx-c73A - chr3L 16427193 intron,intron CG33158 +,dsx-c73A - chr3L_12_16425001 chr3L_16425001 RAL-235 1517 chr3L 16437050 16437097 chr3L 16437149 16437203 9 102 5.5 0.5 3.0 2.2 153 chr3L 16437050 intron,intron CG33158 +,dsx-c73A - chr3L 16437126 intron,intron CG33158 +,dsx-c73A - chr3L 16437203 intron,intron CG33158 +,dsx-c73A - chr3L_9_16435001 chr3L_16435001 RAL-235 1518 chr3L 16450006 16450053 chr3L 16450105 16450158 15 103 1.0 2.0 1.5 6.0 152 chr3L 16450006 intron,intron CG33158 +,dsx-c73A - chr3L 16450082 intron,intron CG33158 +,dsx-c73A - chr3L 16450158 intron,exon CG33158 +,dsx-c73A - chr3L_15_16450001 chr3L_16450001 RAL-235 1519 chr3L 16457538 16457558 chr3L 16457652 16457673 5 114 3.5 8.5 6.0 0.7 135 chr3L 16457538 intron CG33158 + chr3L 16457606 intron CG33158 + chr3L 16457673 intron CG33158 + chr3L_5_16455001 chr3L_16455001 RAL-235 1520 chr3L 16462715 16462763 chr3L 16462829 16462877 9 110 1.0 3.5 2.2 2.8 162 chr3L 16462715 intron CG33158 + chr3L 16462796 intron CG33158 + chr3L 16462877 intron CG33158 + chr3L_9_16460001 chr3L_16460001 RAL-235 1521 chr3L 16493962 16494012 chr3L 16494497 16494526 jockey 16 526 5.0 6.5 5.8 2.4 564 chr3L 16493962 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494526 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_16_16490001 chr3L_16490001 RAL-235 1522 chr3L 16506645 16506696 chr3L 16506858 16506909 17 208 2.0 7.5 4.8 2.9 264 chr3L 16506645 intron CG43373 - chr3L 16506777 intron CG43373 - chr3L 16506909 intron CG43373 - chr3L_17_16505001 chr3L_16505001 RAL-235 1523 chr3L 16533575 16533583 chr3L 16533694 16533714 5 127 5.5 4.5 5.0 0.8 139 chr3L 16533575 intron CG43373 - chr3L 16533644 intron CG43373 - chr3L 16533714 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-235 1524 chr3L 16537830 16537880 chr3L 16537937 16537977 16 104 0.5 6.0 3.2 3.8 147 chr3L 16537830 intron CG43373 - chr3L 16537904 intron CG43373 - chr3L 16537977 intron CG43373 - chr3L_16_16535001 chr3L_16535001 RAL-235 1525 chr3L 16540032 16540088 chr3L 16540140 16540171 19 103 5.0 1.5 3.2 4.5 139 chr3L 16540032 intron CG43373 - chr3L 16540102 intron CG43373 - chr3L 16540171 intron CG43373 - chr3L_19_16540001 chr3L_16540001 RAL-235 1526 chr3L 16560325 16560329 chr3L 16560414 16560426 4 98 4.0 6.5 5.2 0.6 101 chr3L 16560325 intergenic not near genes chr3L 16560376 intergenic not near genes chr3L 16560426 intergenic not near genes chr3L_4_16560001 chr3L_16560001 RAL-235 1527 chr3L 16561095 16561141 chr3L 16561193 16561204 16 82 2.5 2.0 2.2 5.0 109 chr3L 16561095 intergenic not near genes chr3L 16561150 intergenic not near genes chr3L 16561204 intergenic not near genes chr3L_16_16560001 chr3L_16560001 RAL-235 1528 chr3L 16563217 16563250 chr3L 16563318 16563337 10 98 4.5 0.0 2.2 3.1 120 chr3L 16563217 intergenic Mipp1 - chr3L 16563277 intergenic Mipp1 - chr3L 16563337 intergenic Mipp1 - chr3L_10_16560001 chr3L_16560001 RAL-235 1529 chr3L 16587243 16587263 chr3L 16587410 16587430 6 164 6.0 9.0 7.5 0.7 187 chr3L 16587243 5` UTR CG32163 + chr3L 16587336 intron CG32163 + chr3L 16587430 intron CG32163 + chr3L_6_16585001 chr3L_16585001 RAL-235 1530 chr3L 16616491 16616535 chr3L 16621839 16621882 297 12 5339 5.0 2.0 3.5 2.7 5391 chr3L 16616491 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621882 3` UTR Abl - chr3L_12_16615001 chr3L_16615001 RAL-235 1531 chr3L 16632222 16632258 chr3L 16632416 16632434 7 190 2.5 1.0 1.8 2.5 212 chr3L 16632222 intron Abl - chr3L 16632328 intron Abl - chr3L 16632434 intron Abl - chr3L_7_16630001 chr3L_16630001 RAL-235 1532 chr3L 16684008 16684043 chr3L 16689249 16689284 copia 10 5240 5.5 3.0 4.2 1.9 5276 chr3L 16684008 intron,intron Lasp -,CG43954 - chr3L 16686646 intron,intron Lasp -,CG43954 - chr3L 16689284 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_10_16685001 chr3L_16685001 RAL-235 1533 chr3L 16714828 16714872 chr3L 16714932 16714976 11 102 3.5 5.5 4.5 2.0 148 chr3L 16714828 intron Dab + chr3L 16714902 intron Dab + chr3L 16714976 intron Dab + chr3L_11_16710001 chr3L_16710001 RAL-235 1534 chr3L 16735875 16735882 chr3L 16735982 16736005 6 119 2.5 7.5 5.0 1.0 130 chr3L 16735875 intron CG9701 + chr3L 16735940 intron CG9701 + chr3L 16736005 intron CG9701 + chr3L_6_16735001 chr3L_16735001 RAL-235 1535 chr3L 16757627 16757665 chr3L 16757731 16757769 14 105 6.0 3.0 4.5 2.5 142 chr3L 16757627 intergenic not near genes chr3L 16757698 intergenic not near genes chr3L 16757769 intergenic not near genes chr3L_14_16755001 chr3L_16755001 RAL-235 1536 chr3L 16770457 16770481 chr3L 16770557 16770565 5 100 2.0 5.0 3.5 1.1 108 chr3L 16770457 intron Nrt + chr3L 16770511 intron Nrt + chr3L 16770565 intron Nrt + chr3L_5_16770001 chr3L_16770001 RAL-235 1537 chr3L 16805006 16805044 chr3L 16805141 16805179 11 134 4.5 5.5 5.0 1.8 173 chr3L 16805006 intron,5` UTR CG9674 -,nudC + chr3L 16805092 intron,5` UTR CG9674 -,nudC + chr3L 16805179 intron,5` UTR CG9674 -,nudC + chr3L_11_16805001 chr3L_16805001 RAL-235 1538 chr3L 16808023 16808048 chr3L 16808117 16808144 8 94 7.0 0.5 3.8 1.7 121 chr3L 16808023 intron nudC + chr3L 16808084 intron nudC + chr3L 16808144 intron nudC + chr3L_8_16805001 chr3L_16805001 RAL-235 1539 chr3L 16815831 16815887 chr3L 16815937 16815990 6 102 0.0 6.0 3.0 1.5 159 chr3L 16815831 intron,intron nudC +,CG13024 - chr3L 16815910 intron,intron nudC +,CG13024 - chr3L 16815990 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-235 1540 chr3L 16818754 16818779 chr3L 16818826 16818875 9 87 6.5 5.5 6.0 1.3 121 chr3L 16818754 intron,intron nudC +,CG13024 - chr3L 16818814 intron,intron nudC +,CG13024 - chr3L 16818875 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-235 1541 chr3L 16845010 16845043 chr3L 16845143 16845176 9 132 2.0 6.5 4.2 1.7 166 chr3L 16845010 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845093 intergenic CG9669 -,CG9715 + chr3L 16845176 intergenic CG9669 -,CG9715 + chr3L_9_16845001 chr3L_16845001 RAL-235 1542 chr3L 16861009 16861053 chr3L 16861131 16861175 15 121 6.5 5.0 5.8 2.2 166 chr3L 16861009 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861175 intron,exon Rh4 -,CG13029 + chr3L_15_16860001 chr3L_16860001 RAL-235 1543 chr3L 16866189 16866224 chr3L 16866300 16866325 9 108 7.0 1.0 4.0 1.8 136 chr3L 16866189 intron Lmpt + chr3L 16866257 intron Lmpt + chr3L 16866325 intron Lmpt + chr3L_9_16865001 chr3L_16865001 RAL-235 1544 chr3L 16867550 16867561 chr3L 16867627 16867656 5 90 4.5 6.5 5.5 0.8 106 chr3L 16867550 intron Lmpt + chr3L 16867603 intron Lmpt + chr3L 16867656 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-235 1545 chr3L 16873320 16873358 chr3L 16873445 16873483 7 123 11.5 3.0 7.2 0.9 163 chr3L 16873320 intron Lmpt + chr3L 16873402 intron Lmpt + chr3L 16873483 intron Lmpt + chr3L_7_16870001 chr3L_16870001 RAL-235 1546 chr3L 16913705 16913737 chr3L 16913909 16913949 14 207 2.5 6.0 4.2 2.7 244 chr3L 16913705 intron Lmpt + chr3L 16913827 intron Lmpt + chr3L 16913949 intron Lmpt + chr3L_14_16910001 chr3L_16910001 RAL-235 1547 chr3L 16945720 16945760 chr3L 16954883 16954888 roo 13 9152 1.5 1.5 1.5 5.2 9168 chr3L 16945720 exon Obp73a + chr3L 16950304 intergenic not near genes chr3L 16954888 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-235 1548 chr3L 17026781 17026824 chr3L 17026882 17026924 12 95 6.5 4.0 5.2 1.9 143 chr3L 17026781 exon Fit2 + chr3L 17026852 3` UTR Fit2 + chr3L 17026924 3` UTR Fit2 + chr3L_12_17025001 chr3L_17025001 RAL-235 1549 chr3L 17027166 17027188 chr3L 17027268 17027300 7 110 1.0 6.0 3.5 1.6 134 chr3L 17027166 intergenic Fit2 +,CG7730 + chr3L 17027233 intergenic Fit2 +,CG7730 + chr3L 17027300 intergenic Fit2 +,CG7730 + chr3L_7_17025001 chr3L_17025001 RAL-235 1550 chr3L 17034918 17034970 chr3L 17035126 17035127 G2 14 204 1.0 4.5 2.8 3.7 209 chr3L 17034918 intergenic not near genes chr3L 17035022 intergenic not near genes chr3L 17035127 intergenic not near genes chr3L_14_17035001 chr3L_17035001 RAL-235 1551 chr3L 17084984 17085029 chr3L 17094153 17094198 roo 16 9168 8.5 7.0 7.8 1.8 9214 chr3L 17084984 intron Rbp6 - chr3L 17089591 intron Rbp6 - chr3L 17094198 intron Rbp6 - chr3L_16_17085001 chr3L_17085001 RAL-235 1552 chr3L 17206596 17206640 chr3L 17206716 17206734 6 113 6.0 0.0 3.0 1.5 138 chr3L 17206596 intron Rbp6 - chr3L 17206665 intron Rbp6 - chr3L 17206734 intron Rbp6 - chr3L_6_17205001 chr3L_17205001 RAL-235 1553 chr3L 17408895 17408928 chr3L 17408991 17409024 14 96 6.0 5.5 5.8 2.1 129 chr3L 17408895 intron blot - chr3L 17408960 intron blot - chr3L 17409024 intron blot - chr3L_14_17405001 chr3L_17405001 RAL-235 1554 chr3L 17492461 17492507 chr3L 17492790 17492801 13 321 4.5 1.5 3.0 3.2 340 chr3L 17492461 intron Oatp74D + chr3L 17492631 intron Oatp74D + chr3L 17492801 intron Oatp74D + chr3L_13_17490001 chr3L_17490001 RAL-235 1555 chr3L 17516974 17517007 chr3L 17524536 17524539 412 5 7559 3.0 2.0 2.5 1.4 7565 chr3L 17516974 intron CG7564 + chr3L 17520756 intron CG7564 + chr3L 17524539 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-235 1556 chr3L 17585331 17585337 chr3L 17585636 17585669 10 312 21.0 47.5 34.2 0.3 338 chr3L 17585331 intron Eip74EF - chr3L 17585500 intron Eip74EF - chr3L 17585669 intron Eip74EF - chr3L_10_17585001 chr3L_17585001 RAL-235 1557 chr3L 17592767 17592817 chr3L 17592878 17592927 23 107 3.0 5.5 4.2 4.4 160 chr3L 17592767 intron Eip74EF - chr3L 17592847 intron Eip74EF - chr3L 17592927 intron Eip74EF - chr3L_23_17590001 chr3L_17590001 RAL-235 1558 chr3L 17612195 17612227 chr3L 17612300 17612328 6 97 4.5 3.0 3.8 1.2 133 chr3L 17612195 intron Eip74EF - chr3L 17612262 intron Eip74EF - chr3L 17612328 intron Eip74EF - chr3L_6_17610001 chr3L_17610001 RAL-235 1559 chr3L 17612228 17612246 chr3L 17612298 17612346 6 89 2.5 3.0 2.8 1.6 118 chr3L 17612228 intron Eip74EF - chr3L 17612287 intron Eip74EF - chr3L 17612346 intron Eip74EF - chr3L_6_17610001 chr3L_17610001 RAL-235 1560 chr3L 17646020 17646063 chr3L 17646177 17646213 10 156 35.5 35.5 35.5 0.3 193 chr3L 17646020 exon CG43085 - chr3L 17646116 exon CG43085 - chr3L 17646213 exon CG43085 - chr3L_10_17645001 chr3L_17645001 RAL-235 1561 chr3L 17730834 17730881 chr3L 17738182 17738217 mdg1 15 7345 3.0 3.5 3.2 3.6 7383 chr3L 17730834 intron Ccn + chr3L 17734526 intron Ccn + chr3L 17738217 intron Ccn + chr3L_15_17730001 chr3L_17730001 RAL-235 1562 chr3L 17790612 17790636 chr3L 17790887 17790921 5 281 0.5 7.0 3.8 1.0 309 chr3L 17790612 intergenic CG42815 - chr3L 17790766 intergenic CG42815 - chr3L 17790921 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-235 1563 chr3L 17799799 17799841 chr3L 17801596 17801636 S-element 13 1798 7.0 5.0 6.0 1.9 1837 chr3L 17799799 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801636 intron NUCB1 - chr3L_13_17800001 chr3L_17800001 RAL-235 1564 chr3L 17834308 17834357 chr3L 17834491 17834541 9 184 0.5 3.5 2.0 3.0 233 chr3L 17834308 intron Grd + chr3L 17834424 intron Grd + chr3L 17834541 intron Grd + chr3L_9_17830001 chr3L_17830001 RAL-235 1565 chr3L 17837615 17837654 chr3L 17837716 17837744 11 102 1.5 4.0 2.8 2.9 129 chr3L 17837615 exon Grd + chr3L 17837680 intron Grd + chr3L 17837744 exon Grd + chr3L_11_17835001 chr3L_17835001 RAL-235 1566 chr3L 17884675 17884709 chr3L 17884795 17884828 12 119 5.5 5.0 5.2 1.9 153 chr3L 17884675 intergenic CG5506 - chr3L 17884752 intergenic CG5506 - chr3L 17884828 intergenic CG5506 - chr3L_12_17880001 chr3L_17880001 RAL-235 1567 chr3L 17887862 17887871 chr3L 17887967 17887976 4 105 4.5 7.0 5.8 0.6 114 chr3L 17887862 intron CG7402 + chr3L 17887919 intron CG7402 + chr3L 17887976 intron CG7402 + chr3L_4_17885001 chr3L_17885001 RAL-235 1568 chr3L 17918365 17918403 chr3L 17921173 17921190 opus 7 2815 3.0 2.0 2.5 2.0 2825 chr3L 17918365 intergenic not near genes chr3L 17919778 intergenic not near genes chr3L 17921190 intergenic not near genes chr3L_7_17915001 chr3L_17915001 RAL-235 1569 chr3L 18015899 18015932 chr3L 18016011 18016041 10 116 3.5 5.0 4.2 1.9 142 chr3L 18015899 intron Eip75B - chr3L 18015970 intron Eip75B - chr3L 18016041 intron Eip75B - chr3L_10_18015001 chr3L_18015001 RAL-235 1570 chr3L 18029944 18029987 chr3L 18030038 18030063 16 93 4.5 0.0 2.2 5.0 119 chr3L 18029944 intron Eip75B - chr3L 18030004 intron Eip75B - chr3L 18030063 intron Eip75B - chr3L_16_18030001 chr3L_18030001 RAL-235 1571 chr3L 18047702 18047735 chr3L 18056774 18056812 roo 10 9074 5.0 7.0 6.0 1.4 9110 chr3L 18047702 intron Eip75B - chr3L 18052257 intron Eip75B - chr3L 18056812 intron Eip75B - chr3L_10_18050001 chr3L_18050001 RAL-235 1572 chr3L 18106250 18106277 chr3L 18106370 18106405 7 127 1.0 0.0 0.5 4.7 155 chr3L 18106250 intergenic CG13698 -,mRpS26 + chr3L 18106328 intergenic CG13698 -,mRpS26 + chr3L 18106405 intergenic mRpS26 +,CG13698 - chr3L_7_18105001 chr3L_18105001 RAL-235 1573 chr3L 18119616 18119676 chr3L 18119743 18119794 10 121 0.0 2.0 1.0 5.0 178 chr3L 18119616 intron CG7341 + chr3L 18119705 intron CG7341 + chr3L 18119794 5` UTR CG7341 + chr3L_10_18115001 chr3L_18115001 RAL-235 1574 chr3L 18124404 18124430 chr3L 18124508 18124534 8 104 2.5 5.0 3.8 1.7 130 chr3L 18124404 intergenic not near genes chr3L 18124469 intergenic not near genes chr3L 18124534 intergenic not near genes chr3L_8_18120001 chr3L_18120001 RAL-235 1575 chr3L 18124724 18124754 chr3L 18124837 18124875 7 128 6.0 3.0 4.5 1.3 151 chr3L 18124724 intergenic not near genes chr3L 18124800 intergenic not near genes chr3L 18124875 intergenic not near genes chr3L_7_18120001 chr3L_18120001 RAL-235 1576 chr3L 18133016 18133047 chr3L 18133111 18133157 15 107 4.0 0.5 2.2 4.7 141 chr3L 18133016 intergenic Cyp312a1 - chr3L 18133086 intergenic Cyp312a1 - chr3L 18133157 intergenic Cyp312a1 - chr3L_15_18130001 chr3L_18130001 RAL-235 1577 chr3L 18135739 18135755 chr3L 18135839 18135855 6 100 0.5 0.0 0.2 5.0 116 chr3L 18135739 intergenic CR44669 - chr3L 18135797 3` UTR CR44669 - chr3L 18135855 3` UTR CR44669 - chr3L_6_18135001 chr3L_18135001 RAL-235 1578 chr3L 18150296 18150341 chr3L 18150413 18150458 21 115 6.5 6.0 6.2 2.9 162 chr3L 18150296 intron CG7330 + chr3L 18150377 intron CG7330 + chr3L 18150458 intron CG7330 + chr3L_21_18150001 chr3L_18150001 RAL-235 1579 chr3L 18163960 18164239 chr3L 18164182 18164416 18 206 0.0 0.0 0.0 18.0 456 chr3L 18163960 intergenic not near genes chr3L 18164188 intergenic not near genes chr3L 18164416 intergenic not near genes chr3L_18_18160001 chr3L_18160001 RAL-235 1580 chr3L 18198930 18198931 chr3L 24821493 24821494 11 6622563 0.0 11.0 5.5 1.7 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_11_21510001 chr3L_21510001 RAL-235 1581 chr3L 18207894 18207905 chr3L 18207999 18208010 4 105 3.0 0.0 1.5 1.6 116 chr3L 18207894 intergenic not near genes chr3L 18207952 intergenic not near genes chr3L 18208010 intergenic not near genes chr3L_4_18205001 chr3L_18205001 RAL-235 1582 chr3L 18224190 18224203 chr3L 18224297 18224298 7 103 8.0 3.5 5.8 1.0 108 chr3L 18224190 intergenic not near genes chr3L 18224244 intergenic not near genes chr3L 18224298 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-235 1583 chr3L 18224206 18224238 chr3L 18224296 18224308 7 95 1.5 3.0 2.2 2.2 102 chr3L 18224206 intergenic not near genes chr3L 18224257 intergenic not near genes chr3L 18224308 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-235 1584 chr3L 18226660 18226665 chr3L 18226766 18226776 5 110 1.5 9.0 5.2 0.8 116 chr3L 18226660 intergenic not near genes chr3L 18226718 intergenic not near genes chr3L 18226776 intergenic not near genes chr3L_5_18225001 chr3L_18225001 RAL-235 1585 chr3L 18248938 18248984 chr3L 18249056 18249101 13 114 3.5 3.5 3.5 2.9 163 chr3L 18248938 intergenic not near genes chr3L 18249020 intergenic not near genes chr3L 18249101 intergenic not near genes chr3L_13_18245001 chr3L_18245001 RAL-235 1586 chr3L 18255324 18255376 chr3L 18255542 18255596 9 218 4.5 4.0 4.2 1.7 272 chr3L 18255324 intergenic not near genes chr3L 18255460 intergenic not near genes chr3L 18255596 intergenic not near genes chr3L_9_18255001 chr3L_18255001 RAL-235 1587 chr3L 18262452 18262465 chr3L 18262555 18262561 5 101 10.0 6.5 8.2 0.5 109 chr3L 18262452 intergenic not near genes chr3L 18262506 intergenic not near genes chr3L 18262561 intergenic not near genes chr3L_5_18260001 chr3L_18260001 RAL-235 1588 chr3L 18262470 18262488 chr3L 18262553 18262590 10 100 6.0 6.5 6.2 1.4 120 chr3L 18262470 intergenic not near genes chr3L 18262530 intergenic not near genes chr3L 18262590 intergenic not near genes chr3L_10_18260001 chr3L_18260001 RAL-235 1589 chr3L 18436043 18436092 chr3L 18436161 18436209 14 116 4.5 6.0 5.2 2.3 166 chr3L 18436043 intergenic not near genes chr3L 18436126 intergenic not near genes chr3L 18436209 intergenic not near genes chr3L_14_18435001 chr3L_18435001 RAL-235 1590 chr3L 18448603 18448620 chr3L 18448715 18448732 6 112 10.5 5.0 7.8 0.7 129 chr3L 18448603 intergenic not near genes chr3L 18448668 intergenic not near genes chr3L 18448732 intergenic not near genes chr3L_6_18445001 chr3L_18445001 RAL-235 1591 chr3L 18450569 18450610 chr3L 18450656 18450708 5 93 1.0 2.0 1.5 2.0 139 chr3L 18450569 intergenic not near genes chr3L 18450638 intergenic not near genes chr3L 18450708 intergenic not near genes chr3L_5_18450001 chr3L_18450001 RAL-235 1592 chr3L 18456260 18456297 chr3L 18456361 18456405 11 104 6.0 2.0 4.0 2.2 145 chr3L 18456260 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456405 3` UTR CR44670 - chr3L_11_18455001 chr3L_18455001 RAL-235 1593 chr3L 18506125 18506143 chr3L 18509608 18509623 F-element 5 3482 8.0 9.5 8.8 0.5 3498 chr3L 18506125 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509623 intergenic not near genes chr3L_5_18505001 chr3L_18505001 RAL-235 1594 chr3L 18506151 18506161 chr3L 18509599 18509608 F-element 6 3462 6.0 6.5 6.2 0.8 3457 chr3L 18506151 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509608 intergenic not near genes chr3L_6_18505001 chr3L_18505001 RAL-235 1595 chr3L 18528615 18528652 chr3L 18537790 18537833 roo 12 9179 5.0 6.5 5.8 1.8 9218 chr3L 18528615 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537833 intergenic not near genes chr3L_12_18530001 chr3L_18530001 RAL-235 1596 chr3L 18546705 18546736 chr3L 18546799 18546830 7 102 1.0 4.5 2.8 1.8 125 chr3L 18546705 intergenic not near genes chr3L 18546768 intergenic not near genes chr3L 18546830 intergenic not near genes chr3L_7_18545001 chr3L_18545001 RAL-235 1597 chr3L 18582224 18582249 chr3L 18582304 18582354 14 97 2.0 3.0 2.5 4.0 130 chr3L 18582224 intergenic not near genes chr3L 18582289 intergenic not near genes chr3L 18582354 intergenic not near genes chr3L_14_18580001 chr3L_18580001 RAL-235 1598 chr3L 18586562 18586590 chr3L 18586674 18586694 7 112 2.5 2.0 2.2 2.2 132 chr3L 18586562 intergenic not near genes chr3L 18586628 intergenic not near genes chr3L 18586694 intergenic not near genes chr3L_7_18585001 chr3L_18585001 RAL-235 1599 chr3L 18593931 18593977 chr3L 18595931 18595961 Doc 17 1994 4.5 0.5 2.5 4.9 2030 chr3L 18593931 intergenic term - chr3L 18594946 intergenic not near genes chr3L 18595961 intergenic CR45389 + chr3L_17_18590001 chr3L_18590001 RAL-235 1600 chr3L 18638562 18638609 chr3L 18638675 18638723 13 111 3.5 2.0 2.8 3.4 161 chr3L 18638562 intron MYPT-75D + chr3L 18638642 intron MYPT-75D + chr3L 18638723 intron MYPT-75D + chr3L_13_18635001 chr3L_18635001 RAL-235 1601 chr3L 18656177 18656217 chr3L 18656282 18656295 4 96 4.0 7.0 5.5 0.6 118 chr3L 18656177 intron MYPT-75D + chr3L 18656236 intron MYPT-75D + chr3L 18656295 intron MYPT-75D + chr3L_4_18655001 chr3L_18655001 RAL-235 1602 chr3L 18710772 18710791 chr3L 18718742 18718761 Stalker2 6 7968 6.5 1.0 3.8 1.2 7989 chr3L 18710772 intergenic not near genes chr3L 18714766 intergenic not near genes chr3L 18718761 intergenic not near genes chr3L_6_18710001 chr3L_18710001 RAL-235 1603 chr3L 18721785 18721806 chr3L 18721875 18721912 6 103 3.0 3.5 3.2 1.4 127 chr3L 18721785 intergenic CG12477 - chr3L 18721848 intergenic CG12477 - chr3L 18721912 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 RAL-235 1604 chr3L 18730382 18730403 chr3L 18730557 18730597 7 194 1.5 4.5 3.0 1.8 215 chr3L 18730382 intergenic not near genes chr3L 18730490 intergenic not near genes chr3L 18730597 intergenic not near genes chr3L_7_18730001 chr3L_18730001 RAL-235 1605 chr3L 18738659 18738697 chr3L 18738758 18738805 14 103 3.0 4.0 3.5 3.1 146 chr3L 18738659 intergenic not near genes chr3L 18738732 intergenic not near genes chr3L 18738805 intergenic not near genes chr3L_14_18735001 chr3L_18735001 RAL-235 1606 chr3L 18753530 18753564 chr3L 18753630 18753666 14 100 2.5 6.5 4.5 2.5 136 chr3L 18753530 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753666 intron ftz-f1 - chr3L_14_18750001 chr3L_18750001 RAL-235 1607 chr3L 18772397 18772428 chr3L 18781088 18781129 roo 15 8697 6.5 1.5 4.0 3.0 8732 chr3L 18772397 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781129 intron ftz-f1 - chr3L_15_18775001 chr3L_18775001 RAL-235 1608 chr3L 18784385 18784406 chr3L 18784494 18784515 13 109 5.0 12.0 8.5 1.4 130 chr3L 18784385 intron ftz-f1 - chr3L 18784450 intron ftz-f1 - chr3L 18784515 intron ftz-f1 - chr3L_13_18780001 chr3L_18780001 RAL-235 1609 chr3L 18810127 18810167 chr3L 18810224 18810269 11 101 6.0 2.0 4.0 2.2 142 chr3L 18810127 intron CG14073 - chr3L 18810198 intron CG14073 - chr3L 18810269 intron CG14073 - chr3L_11_18810001 chr3L_18810001 RAL-235 1610 chr3L 18853986 18854015 chr3L 18854107 18854136 11 120 7.0 3.5 5.2 1.8 150 chr3L 18853986 intergenic CR45387 + chr3L 18854061 intergenic CR45387 + chr3L 18854136 intergenic CR45387 + chr3L_11_18850001 chr3L_18850001 RAL-235 1611 chr3L 18924471 18924507 chr3L 18924567 18924593 9 91 2.5 7.5 5.0 1.5 122 chr3L 18924471 intron CG32204 - chr3L 18924532 intron CG32204 - chr3L 18924593 intron CG32204 - chr3L_9_18920001 chr3L_18920001 RAL-235 1612 chr3L 18929972 18929989 chr3L 18930040 18930043 4 82 4.0 3.0 3.5 0.9 71 chr3L 18929972 intron CG32204 - chr3L 18930008 intron CG32204 - chr3L 18930043 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-235 1613 chr3L 18933083 18933127 chr3L 18933177 18933232 6 103 4.0 4.0 4.0 1.2 149 chr3L 18933083 intron CG32204 - chr3L 18933158 intron CG32204 - chr3L 18933232 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-235 1614 chr3L 18959984 18960030 chr3L 18960085 18960131 10 100 5.0 9.0 7.0 1.2 147 chr3L 18959984 intergenic not near genes chr3L 18960058 intergenic not near genes chr3L 18960131 intergenic not near genes chr3L_10_18960001 chr3L_18960001 RAL-235 1615 chr3L 18969584 18969626 chr3L 18969690 18969739 10 109 4.0 4.5 4.2 1.9 155 chr3L 18969584 intergenic not near genes chr3L 18969662 intergenic not near genes chr3L 18969739 intergenic not near genes chr3L_10_18965001 chr3L_18965001 RAL-235 1616 chr3L 18977997 18978043 chr3L 18978098 18978144 12 97 6.0 3.5 4.8 2.1 147 chr3L 18977997 intergenic not near genes chr3L 18978070 intergenic not near genes chr3L 18978144 intergenic not near genes chr3L_12_18975001 chr3L_18975001 RAL-235 1617 chr3L 19082025 19082065 chr3L 19082146 19082177 5 119 2.0 3.0 2.5 1.4 152 chr3L 19082025 intron Mkp3 - chr3L 19082101 intron Mkp3 - chr3L 19082177 intron Mkp3 - chr3L_5_19080001 chr3L_19080001 RAL-235 1618 chr3L 19101699 19101737 chr3L 19102091 19102110 8 389 0.5 5.5 3.0 2.0 411 chr3L 19101699 intergenic not near genes chr3L 19101904 intergenic not near genes chr3L 19102110 intergenic not near genes chr3L_8_19100001 chr3L_19100001 RAL-235 1619 chr3L 19111360 19111370 chr3L 19111467 19111467 5 104 3.0 5.5 4.2 1.0 107 chr3L 19111360 intron CG14082 - chr3L 19111414 intron CG14082 - chr3L 19111467 intron CG14082 - chr3L_5_19110001 chr3L_19110001 RAL-235 1620 chr3L 19117032 19117070 chr3L 19124488 19124537 mdg1 9 7459 6.0 4.0 5.0 1.5 7505 chr3L 19117032 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124537 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-235 1621 chr3L 19127350 19127396 chr3L 19127446 19127492 13 84 3.0 3.0 3.0 3.2 142 chr3L 19127350 intron CG14082 - chr3L 19127421 intron CG14082 - chr3L 19127492 intron CG14082 - chr3L_13_19125001 chr3L_19125001 RAL-235 1622 chr3L 19127721 19127765 chr3L 19127828 19127872 10 104 1.5 6.0 3.8 2.1 151 chr3L 19127721 intron CG14082 - chr3L 19127796 intron CG14082 - chr3L 19127872 intron CG14082 - chr3L_10_19125001 chr3L_19125001 RAL-235 1623 chr3L 19182367 19182417 chr3L 19182468 19182499 14 96 5.0 2.0 3.5 3.1 132 chr3L 19182367 intron fz2 - chr3L 19182433 intron fz2 - chr3L 19182499 intron fz2 - chr3L_14_19180001 chr3L_19180001 RAL-235 1624 chr3L 19208051 19208090 chr3L 19209435 19209459 Doc 6 1383 4.0 4.5 4.2 1.2 1408 chr3L 19208051 intron fz2 - chr3L 19208755 intron fz2 - chr3L 19209459 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-235 1625 chr3L 19218641 19218663 chr3L 19219391 19219397 6 745 8.0 2.5 5.2 1.0 756 chr3L 19218641 intron fz2 - chr3L 19219019 intron fz2 - chr3L 19219397 intron fz2 - chr3L_6_19215001 chr3L_19215001 RAL-235 1626 chr3L 19265251 19265286 chr3L 19268495 19268530 8 3245 24.0 25.5 24.8 0.3 3279 chr3L 19265251 3` UTR,exon CG42374 +,CG9666 + chr3L 19266890 exon CG9629 - chr3L 19268530 intron CG9629 - chr3L_8_19265001 chr3L_19265001 RAL-235 1627 chr3L 19336040 19336072 chr3L 19336135 19336149 5 94 1.5 1.5 1.5 2.0 109 chr3L 19336040 intron pip - chr3L 19336094 intron pip - chr3L 19336149 intron pip - chr3L_5_19335001 chr3L_19335001 RAL-235 1628 chr3L 19365921 19365930 chr3L 19366038 19366042 4 115 0.0 9.5 4.8 0.7 121 chr3L 19365921 intron CG32206 - chr3L 19365982 intron CG32206 - chr3L 19366042 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-235 1629 chr3L 19404957 19404996 chr3L 19405051 19405092 13 93 4.0 3.5 3.8 2.7 135 chr3L 19404957 intron CG32206 - chr3L 19405024 intron CG32206 - chr3L 19405092 intron CG32206 - chr3L_13_19405001 chr3L_19405001 RAL-235 1630 chr3L 19443155 19443173 chr3L 19443237 19443276 6 94 2.5 3.5 3.0 1.5 121 chr3L 19443155 intron CG33062 - chr3L 19443216 intron CG33062 - chr3L 19443276 intron CG33062 - chr3L_6_19440001 chr3L_19440001 RAL-235 1631 chr3L 19460397 19460438 chr3L 19460500 19460539 9 98 7.0 3.5 5.2 1.5 142 chr3L 19460397 intergenic not near genes chr3L 19460468 intergenic not near genes chr3L 19460539 intergenic not near genes chr3L_9_19460001 chr3L_19460001 RAL-235 1632 chr3L 19462006 19462050 chr3L 19462141 19462185 11 131 2.5 4.5 3.5 2.4 179 chr3L 19462006 intergenic not near genes chr3L 19462096 intergenic not near genes chr3L 19462185 intergenic not near genes chr3L_11_19460001 chr3L_19460001 RAL-235 1633 chr3L 19544233 19544269 chr3L 19544335 19544360 19 101 5.5 5.0 5.2 3.1 127 chr3L 19544233 intergenic CG9279 -,l(3)76BDr - chr3L 19544296 intergenic l(3)76BDr -,CG9279 - chr3L 19544360 3` UTR l(3)76BDr - chr3L_19_19540001 chr3L_19540001 RAL-235 1634 chr3L 19642133 19642184 chr3L 19642273 19642324 12 136 4.5 2.5 3.5 2.7 191 chr3L 19642133 intron CG8786 - chr3L 19642228 intron CG8786 - chr3L 19642324 intron CG8786 - chr3L_12_19640001 chr3L_19640001 RAL-235 1635 chr3L 19676064 19676097 chr3L 19676163 19676182 8 92 4.0 0.5 2.2 2.5 118 chr3L 19676064 intergenic not near genes chr3L 19676123 intergenic not near genes chr3L 19676182 intergenic not near genes chr3L_8_19675001 chr3L_19675001 RAL-235 1636 chr3L 19695437 19695458 chr3L 19695514 19695557 4 92 0.5 2.5 1.5 1.6 120 chr3L 19695437 intergenic verm - chr3L 19695497 intergenic verm - chr3L 19695557 intergenic verm - chr3L_4_19695001 chr3L_19695001 RAL-235 1637 chr3L 19820283 19820319 chr3L 19827852 19827888 412 15 7567 2.5 4.5 3.5 3.3 7605 chr3L 19820283 intron Deaf1 + chr3L 19824086 intron Deaf1 + chr3L 19827888 intron Deaf1 + chr3L_15_19820001 chr3L_19820001 RAL-235 1638 chr3L 19848484 19848531 chr3L 19857694 19857741 roo 10 9201 8.5 4.0 6.2 1.4 9257 chr3L 19848484 intron Papss + chr3L 19853112 intron Papss + chr3L 19857741 intron Papss + chr3L_10_19850001 chr3L_19850001 RAL-235 1639 chr3L 19861828 19861851 chr3L 19863608 19863659 S-element 6 1803 1.5 4.5 3.0 1.5 1831 chr3L 19861828 5` UTR CR45433 + chr3L 19862744 intergenic not near genes chr3L 19863659 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-235 1640 chr3L 19933525 19933560 chr3L 19934361 19934402 12 836 7.5 2.5 5.0 2.0 877 chr3L 19933525 intergenic CR45678 + chr3L 19933964 5` UTR CR45678 + chr3L 19934402 intergenic CR45678 + chr3L_12_19930001 chr3L_19930001 RAL-235 1641 chr3L 19981190 19981236 chr3L 19981285 19981336 18 99 5.0 6.0 5.5 2.8 146 chr3L 19981190 intergenic CG17732 + chr3L 19981263 intergenic CG17732 + chr3L 19981336 intergenic CG17732 + chr3L_18_19980001 chr3L_19980001 RAL-235 1642 chr3L 20042567 20042610 chr3L 20042667 20042710 8 100 5.0 6.0 5.5 1.2 143 chr3L 20042567 intergenic not near genes chr3L 20042638 intergenic not near genes chr3L 20042710 intergenic not near genes chr3L_8_20040001 chr3L_20040001 RAL-235 1643 chr3L 20113640 20113690 chr3L 20122917 20122967 roo 17 9276 8.0 3.0 5.5 2.6 9327 chr3L 20113640 intergenic not near genes chr3L 20118304 intergenic not near genes chr3L 20122967 intergenic not near genes chr3L_17_20115001 chr3L_20115001 RAL-235 1644 chr3L 20143071 20143113 chr3L 20143164 20143174 14 94 4.0 5.0 4.5 2.5 103 chr3L 20143071 intergenic not near genes chr3L 20143122 intergenic not near genes chr3L 20143174 intergenic not near genes chr3L_14_20140001 chr3L_20140001 RAL-235 1645 chr3L 20148263 20148307 chr3L 20148373 20148399 11 106 3.5 2.0 2.8 2.9 136 chr3L 20148263 intergenic not near genes chr3L 20148331 intergenic not near genes chr3L 20148399 intergenic not near genes chr3L_11_20145001 chr3L_20145001 RAL-235 1646 chr3L 20156165 20156183 chr3L 20156288 20156325 4 137 2.5 0.5 1.5 1.6 160 chr3L 20156165 intron CG42674 - chr3L 20156245 intron CG42674 - chr3L 20156325 intron CG42674 - chr3L_4_20155001 chr3L_20155001 RAL-235 1647 chr3L 20249618 20249666 chr3L 20249714 20249753 12 95 4.5 5.5 5.0 2.0 135 chr3L 20249618 intron rdgC + chr3L 20249686 intron rdgC + chr3L 20249753 intron rdgC + chr3L_12_20245001 chr3L_20245001 RAL-235 1648 chr3L 20251138 20251171 chr3L 20251226 20251277 12 101 4.5 5.5 5.0 2.0 139 chr3L 20251138 intron rdgC + chr3L 20251208 intron rdgC + chr3L 20251277 intron rdgC + chr3L_12_20250001 chr3L_20250001 RAL-235 1649 chr3L 20257329 20257354 chr3L 20258459 20258491 pogo 10 1134 6.5 9.0 7.8 1.1 1162 chr3L 20257329 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258491 intron rdgC + chr3L_10_20255001 chr3L_20255001 RAL-235 1650 chr3L 20257357 20257363 chr3L 20258458 20258490 pogo 4 1123 4.0 9.0 6.5 0.5 1133 chr3L 20257357 intron rdgC + chr3L 20257924 intron rdgC + chr3L 20258490 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-235 1651 chr3L 20386918 20386969 chr3L 20387040 20387089 12 113 3.5 5.5 4.5 2.2 171 chr3L 20386918 intron fbl + chr3L 20387004 intron fbl + chr3L 20387089 intron fbl + chr3L_12_20385001 chr3L_20385001 RAL-235 1652 chr3L 20402177 20402227 chr3L 20402275 20402323 20 100 1.5 5.5 3.5 4.4 146 chr3L 20402177 intergenic not near genes chr3L 20402250 intergenic not near genes chr3L 20402323 intergenic not near genes chr3L_20_20400001 chr3L_20400001 RAL-235 1653 chr3L 20403558 20403606 chr3L 20403673 20403721 19 112 4.0 4.0 4.0 3.8 163 chr3L 20403558 intergenic not near genes chr3L 20403640 intergenic not near genes chr3L 20403721 intergenic not near genes chr3L_19_20400001 chr3L_20400001 RAL-235 1654 chr3L 20431574 20431624 chr3L 20431742 20431791 11 167 0.5 0.5 0.5 7.3 217 chr3L 20431574 exon Las - chr3L 20431682 intron Las - chr3L 20431791 intron Las - chr3L_11_20430001 chr3L_20430001 RAL-235 1655 chr3L 20476732 20476781 chr3L 20484351 20484380 springer 16 7614 6.0 4.0 5.0 2.7 7648 chr3L 20476732 3` UTR isoQC + chr3L 20480556 intergenic not near genes chr3L 20484380 3` UTR ZnT77C - chr3L_16_20480001 chr3L_20480001 RAL-235 1656 chr3L 20525230 20525230 chr3L 24821494 24821494 4 4296264 12.5 11.0 11.8 0.3 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_4_22670001 chr3L_22670001 RAL-235 1657 chr3L 20536291 20536342 chr3L 20536392 20536423 14 98 5.0 4.0 4.5 2.5 132 chr3L 20536291 intron Rcd2 - chr3L 20536357 intron Rcd2 - chr3L 20536423 intron Rcd2 - chr3L_14_20535001 chr3L_20535001 RAL-235 1658 chr3L 20616685 20616726 chr3L 20616777 20616814 8 91 4.5 2.0 3.2 1.9 129 chr3L 20616685 intron knrl - chr3L 20616750 intron knrl - chr3L 20616814 intron knrl - chr3L_8_20615001 chr3L_20615001 RAL-235 1659 chr3L 20710738 20710792 chr3L 20710835 20710889 17 92 2.5 1.0 1.8 6.1 151 chr3L 20710738 intergenic not near genes chr3L 20710814 intergenic not near genes chr3L 20710889 intergenic not near genes chr3L_17_20710001 chr3L_20710001 RAL-235 1660 chr3L 20752613 20752646 chr3L 20755532 20755573 13 2929 0.5 2.5 1.5 5.2 2960 chr3L 20752613 intergenic not near genes chr3L 20754093 intergenic not near genes chr3L 20755573 exon CG33912 - chr3L_13_20750001 chr3L_20750001 RAL-235 1661 chr3L 20849252 20849300 chr3L 20849350 20849399 21 95 4.0 4.0 4.0 4.2 147 chr3L 20849252 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849399 intron CG32432 - chr3L_21_20845001 chr3L_20845001 RAL-235 1662 chr3L 20858060 20858101 chr3L 20858169 20858200 19 115 6.0 3.5 4.8 3.3 140 chr3L 20858060 intron CG32432 - chr3L 20858130 intron CG32432 - chr3L 20858200 intron CG32432 - chr3L_19_20855001 chr3L_20855001 RAL-235 1663 chr3L 20913739 20913780 chr3L 20913831 20913877 11 90 1.0 3.5 2.2 3.4 138 chr3L 20913739 intergenic CR43930 - chr3L 20913808 intergenic CR43930 - chr3L 20913877 intergenic CR43930 - chr3L_11_20910001 chr3L_20910001 RAL-235 1664 chr3L 20921316 20921367 chr3L 20921845 20921854 9 507 5.5 2.5 4.0 1.8 538 chr3L 20921316 3` UTR CR43929 - chr3L 20921585 3` UTR CR43929 - chr3L 20921854 intergenic CR43929 - chr3L_9_20920001 chr3L_20920001 RAL-235 1665 chr3L 20931800 20931814 chr3L 20931907 20931921 6 105 3.5 1.5 2.5 1.7 121 chr3L 20931800 intron fng - chr3L 20931860 intron fng - chr3L 20931921 intron fng - chr3L_6_20930001 chr3L_20930001 RAL-235 1666 chr3L 21014902 21014946 chr3L 21023403 21023407 Tirant 7 8486 2.5 2.0 2.2 2.2 8505 chr3L 21014902 intron skd - chr3L 21019154 intron skd - chr3L 21023407 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-235 1667 chr3L 21079794 21079812 chr3L 21079958 21079962 6 158 1.0 2.0 1.5 2.4 168 chr3L 21079794 intron ko - chr3L 21079878 intron ko - chr3L 21079962 intron ko - chr3L_6_21075001 chr3L_21075001 RAL-235 1668 chr3L 21093765 21093800 chr3L 21093898 21093922 5 130 1.5 4.5 3.0 1.2 157 chr3L 21093765 intron ko - chr3L 21093844 intron ko - chr3L 21093922 intron ko - chr3L_5_21090001 chr3L_21090001 RAL-235 1669 chr3L 21151853 21151877 chr3L 21156951 21156981 flea 12 5101 6.5 5.5 6.0 1.7 5128 chr3L 21151853 intron Ac78C - chr3L 21154417 intron Ac78C - chr3L 21156981 intron Ac78C - chr3L_12_21150001 chr3L_21150001 RAL-235 1670 chr3L 21151881 21151894 chr3L 21156949 21156996 flea 8 5094 3.5 5.5 4.5 1.5 5115 chr3L 21151881 intron Ac78C - chr3L 21154438 intron Ac78C - chr3L 21156996 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-235 1671 chr3L 21232795 21232837 chr3L 21232943 21232953 10 141 5.0 3.0 4.0 2.0 158 chr3L 21232795 intron Eip78C + chr3L 21232874 intron Eip78C + chr3L 21232953 intron Eip78C + chr3L_10_21230001 chr3L_21230001 RAL-235 1672 chr3L 21306133 21306179 chr3L 21315312 21315326 roo 16 9169 5.5 3.5 4.5 2.9 9193 chr3L 21306133 3` UTR CG7632 + chr3L 21310730 intron Pc - chr3L 21315326 3` UTR Pc - chr3L_16_21310001 chr3L_21310001 RAL-235 1673 chr3L 21372698 21372726 chr3L 21379226 21379254 McClintock 5 6525 11.5 1.5 6.5 0.7 6556 chr3L 21372698 intergenic not near genes chr3L 21375976 intergenic not near genes chr3L 21379254 intergenic not near genes chr3L_5_21375001 chr3L_21375001 RAL-235 1674 chr3L 21372727 21372750 chr3L 21379245 21379278 McClintock 10 6525 5.0 7.0 6.0 1.4 6551 chr3L 21372727 intergenic not near genes chr3L 21376002 intergenic not near genes chr3L 21379278 intergenic not near genes chr3L_10_21375001 chr3L_21375001 RAL-235 1675 chr3L 21415877 21415890 chr3L 21415994 21416007 6 117 7.0 4.5 5.8 0.9 130 chr3L 21415877 intron rgn + chr3L 21415942 intron rgn + chr3L 21416007 intron rgn + chr3L_6_21415001 chr3L_21415001 RAL-235 1676 chr3L 21415891 21415917 chr3L 21415993 21416021 11 106 2.5 4.0 3.2 2.6 130 chr3L 21415891 intron rgn + chr3L 21415956 intron rgn + chr3L 21416021 intron rgn + chr3L_11_21415001 chr3L_21415001 RAL-235 1677 chr3L 4341332 4341335 chr3L 21448027 21448027 4 17106694 17.5 19.0 18.2 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-235 1678 chr3L 21498847 21498862 chr3L 21500477 21500503 1360 4 1642 5.5 4.0 4.8 0.7 1656 chr3L 21498847 intron Glg1 - chr3L 21499675 intron Glg1 - chr3L 21500503 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-235 1679 chr3L 21625092 21625111 chr3L 21625197 21625222 7 105 4.0 10.0 7.0 0.9 130 chr3L 21625092 intron CG7166 - chr3L 21625157 intron CG7166 - chr3L 21625222 intron CG7166 - chr3L_7_21625001 chr3L_21625001 RAL-235 1680 chr3L 21749330 21749351 chr3L 21754479 21754499 Doc 8 5156 2.0 1.5 1.8 2.9 5169 chr3L 21749330 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754499 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-235 1681 chr3L 21769037 21769087 chr3L 21769140 21769194 16 103 2.5 6.5 4.5 2.9 157 chr3L 21769037 intron,intron Syn1 -,CG42689 + chr3L 21769116 intron,intron Syn1 -,CG42689 + chr3L 21769194 intron,intron Syn1 -,CG42689 + chr3L_16_21765001 chr3L_21765001 RAL-235 1682 chr3L 21798752 21798792 chr3L 21798856 21798881 10 104 4.5 6.5 5.5 1.5 129 chr3L 21798752 intergenic not near genes chr3L 21798816 intergenic not near genes chr3L 21798881 intergenic not near genes chr3L_10_21795001 chr3L_21795001 RAL-235 1683 chr3L 21836726 21836763 chr3L 21836813 21836823 13 98 3.0 4.5 3.8 2.7 97 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836774 3` UTR P5CDh1 - chr3L 21836823 3` UTR P5CDh1 - chr3L_13_21835001 chr3L_21835001 RAL-235 1684 chr3L 21868332 21868378 chr3L 21868676 21868692 INE-1 10 338 2.5 4.5 3.5 2.2 360 chr3L 21868332 intron mub + chr3L 21868512 intron mub + chr3L 21868692 intron mub + chr3L_10_21865001 chr3L_21865001 RAL-235 1685 chr3L 21883795 21883843 chr3L 21883895 21883936 19 97 5.0 3.0 4.0 3.8 141 chr3L 21883795 intron mub + chr3L 21883866 intron mub + chr3L 21883936 intron mub + chr3L_19_21880001 chr3L_21880001 RAL-235 1686 chr3L 21905343 21905362 chr3L 21905410 21905452 8 83 4.0 1.5 2.8 2.1 109 chr3L 21905343 intron mub + chr3L 21905398 intron mub + chr3L 21905452 intron mub + chr3L_8_21905001 chr3L_21905001 RAL-235 1687 chr3L 22092807 22092810 chr3L 22092928 22092931 4 121 4.0 2.5 3.2 1.0 124 chr3L 22092807 intergenic not near genes chr3L 22092869 intergenic not near genes chr3L 22092931 intergenic not near genes chr3L_4_22090001 chr3L_22090001 RAL-235 1688 chr3L 22092812 22092826 chr3L 22092927 22092937 8 118 1.0 2.5 1.8 2.9 125 chr3L 22092812 intergenic not near genes chr3L 22092874 intergenic not near genes chr3L 22092937 intergenic not near genes chr3L_8_22090001 chr3L_22090001 RAL-235 1689 chr3L 22099655 22099707 chr3L 22105861 22105867 3S18 17 6199 6.5 6.0 6.2 2.4 6212 chr3L 22099655 intergenic not near genes chr3L 22102761 intergenic not near genes chr3L 22105867 intergenic not near genes chr3L_17_22100001 chr3L_22100001 RAL-235 1690 chr3L 22169463 22169485 chr3L 22169556 22169583 10 108 1.5 4.0 2.8 2.6 120 chr3L 22169463 intron olf413 + chr3L 22169523 intron olf413 + chr3L 22169583 intron olf413 + chr3L_10_22165001 chr3L_22165001 RAL-235 1691 chr3L 22204990 22205018 chr3L 22205086 22205120 8 98 5.5 4.0 4.8 1.4 130 chr3L 22204990 intron olf413 + chr3L 22205055 intron olf413 + chr3L 22205120 intron olf413 + chr3L_8_22205001 chr3L_22205001 RAL-235 1692 chr3L 22435569 22435610 chr3L 22435664 22435677 9 85 4.0 3.0 3.5 2.0 108 chr3L 22435569 intergenic not near genes chr3L 22435623 intergenic not near genes chr3L 22435677 intergenic not near genes chr3L_9_22435001 chr3L_22435001 RAL-235 1693 chr3L 22522684 22522728 chr3L 22522774 22522825 21 93 5.0 1.5 3.2 5.0 141 chr3L 22522684 intergenic not near genes chr3L 22522754 intergenic not near genes chr3L 22522825 intergenic not near genes chr3L_21_22520001 chr3L_22520001 RAL-235 1694 chr3L 22555770 22555799 chr3L 22563239 22563278 blood 7 7480 2.0 1.5 1.8 2.5 7508 chr3L 22555770 intergenic not near genes chr3L 22559524 intergenic not near genes chr3L 22563278 intergenic not near genes chr3L_7_22555001 chr3L_22555001 RAL-235 1695 chr3L 22570426 22570458 chr3L 22570568 22570622 9 154 5.0 6.0 5.5 1.4 196 chr3L 22570426 intergenic not near genes chr3L 22570524 intergenic not near genes chr3L 22570622 intergenic not near genes chr3L_9_22570001 chr3L_22570001 RAL-235 1696 chr3L 22617182 22617222 chr3L 22624643 22624675 blood 21 7464 2.5 4.5 3.5 4.7 7493 chr3L 22617182 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624675 intron CG14459 - chr3L_21_22620001 chr3L_22620001 RAL-235 1697 chr3L 22651730 22651769 chr3L 22651821 22651875 10 96 4.0 5.5 4.8 1.7 145 chr3L 22651730 intergenic CG33772 - chr3L 22651802 intergenic CG33772 - chr3L 22651875 exon CG33772 - chr3L_10_22650001 chr3L_22650001 RAL-235 1698 chr3L 22678089 22678102 chr3L 22678171 22678214 5 97 3.0 5.5 4.2 1.0 125 chr3L 22678089 intron CG14457 + chr3L 22678152 intron CG14457 + chr3L 22678214 intron CG14457 + chr3L_5_22675001 chr3L_22675001 RAL-235 1699 chr3L 22734294 22734339 chr3L 22734395 22734411 8 98 5.5 5.0 5.2 1.3 117 chr3L 22734294 intron CG11241 - chr3L 22734352 intron CG11241 - chr3L 22734411 intron CG11241 - chr3L_8_22730001 chr3L_22730001 RAL-235 1700 chr3L 22757719 22757736 chr3L 22757791 22757815 9 84 3.5 6.0 4.8 1.6 96 chr3L 22757719 intron SPoCk + chr3L 22757767 intron SPoCk + chr3L 22757815 intron SPoCk + chr3L_9_22755001 chr3L_22755001 RAL-235 1701 chr3L 22761376 22761408 chr3L 22766820 22766862 Ivk 9 5446 7.5 2.0 4.8 1.6 5486 chr3L 22761376 intron SPoCk + chr3L 22764119 intron SPoCk + chr3L 22766862 intron SPoCk + chr3L_9_22760001 chr3L_22760001 RAL-235 1702 chr3L 22853452 22853720 chr3L 22853549 22853824 29 101 1.0 5.5 3.2 6.9 372 chr3L 22853452 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853638 5` UTR CR43426 + chr3L 22853824 5` UTR CR43426 + chr3L_29_22850001 chr3L_22850001 RAL-235 1703 chr3L 22865973 22866008 chr3L 22867121 22867161 Doc 13 1152 9.5 8.5 9.0 1.3 1188 chr3L 22865973 intron CG33170 + chr3L 22866567 intron CG33170 + chr3L 22867161 intron CG33170 + chr3L_13_22865001 chr3L_22865001 RAL-235 1704 chr3L 22886503 22886546 chr3L 22886695 22886714 4 178 0.5 0.5 0.5 2.7 211 chr3L 22886503 intron slif + chr3L 22886608 intron slif + chr3L 22886714 intron slif + chr3L_4_22885001 chr3L_22885001 RAL-235 1705 chr3L 22908066 22908066 chr3L 24821494 24821494 7 1913428 45.5 11.0 28.2 0.2 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_7_23860001 chr3L_23860001 RAL-235 1706 chr3L 22908067 22908067 chr3L 24821492 24821494 9 1913427 45.5 11.0 28.2 0.3 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_9_23860001 chr3L_23860001 RAL-235 1707 chr3L 22902393 22902398 chr3L 22909824 22909869 Cr1a 9 7438 12.0 21.5 16.8 0.5 7476 chr3L 22902393 exon BoYb + chr3L 22906131 intergenic not near genes chr3L 22909869 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-235 1708 chr3L 22924954 22924973 chr3L 22925030 22925065 5 84 2.0 0.5 1.2 2.3 111 chr3L 22924954 intergenic not near genes chr3L 22925010 intergenic not near genes chr3L 22925065 intergenic not near genes chr3L_5_22925001 chr3L_22925001 RAL-235 1709 chr3L 22989845 22989849 chr3L 22996839 22996842 297 4 6993 9.5 7.0 8.2 0.4 6997 chr3L 22989845 intergenic not near genes chr3L 22993344 intergenic not near genes chr3L 22996842 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-235 1710 chr3L 22989855 22989887 chr3L 22996838 22996867 297 7 6990 4.0 7.0 5.5 1.1 7012 chr3L 22989855 intergenic not near genes chr3L 22993361 intergenic not near genes chr3L 22996867 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-235 1711 chr3L 23207939 23207978 chr3L 23208058 23208097 12 114 4.0 2.0 3.0 3.0 158 chr3L 23207939 intron nAChRalpha4 + chr3L 23208018 intron nAChRalpha4 + chr3L 23208097 intron nAChRalpha4 + chr3L_12_23205001 chr3L_23205001 RAL-235 1712 chr3L 23468012 23468020 chr3L 23468159 23468172 4 150 26.0 28.5 27.2 0.1 160 chr3L 23468012 intergenic not near genes chr3L 23468092 intergenic not near genes chr3L 23468172 intergenic not near genes chr3L_4_23465001 chr3L_23465001 RAL-235 1713 chr3L 23554844 23554866 chr3L 23555163 23555179 5 314 2.5 4.0 3.2 1.2 335 chr3L 23554844 intron AGO3 + chr3L 23555012 intron AGO3 + chr3L 23555179 intron AGO3 + chr3L_5_23555001 chr3L_23555001 RAL-235 1714 chr3L 23875506 23875537 chr3L 23875607 23875635 5 97 6.0 5.0 5.5 0.8 129 chr3L 23875506 intron CG40470 - chr3L 23875570 intron CG40470 - chr3L 23875635 intron CG40470 - chr3L_5_23875001 chr3L_23875001 RAL-235 1715 chr3L 23940596 23940650 chr3L 23940701 23940754 13 92 1.0 3.0 2.0 4.3 158 chr3L 23940596 intron CG40470 - chr3L 23940675 intron CG40470 - chr3L 23940754 intron CG40470 - chr3L_13_23940001 chr3L_23940001 RAL-235 1716 chr3L 24012397 24012406 chr3L 24020755 24020767 roo 4 8360 4.0 6.0 5.0 0.7 8370 chr3L 24012397 intergenic not near genes chr3L 24016582 intergenic not near genes chr3L 24020767 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-235 1717 chr3L 24012408 24012438 chr3L 24020746 24020799 roo 7 8349 1.5 6.0 3.8 1.5 8391 chr3L 24012408 intergenic not near genes chr3L 24016604 intergenic not near genes chr3L 24020799 intergenic not near genes chr3L_7_24015001 chr3L_24015001 RAL-235 1718 chr3L 25354043 25354068 chr3L 25354226 25354250 7 189 1.5 4.5 3.0 1.8 207 chr3L 25354043 intergenic not near genes chr3L 25354146 intergenic not near genes chr3L 25354250 intergenic not near genes chr3L_7_25350001 chr3L_25350001 RAL-235 1719 chr3L 26695955 26695969 chr3L 26697280 26697285 4 1315 11.5 15.0 13.2 0.3 1330 chr3L 26695955 intergenic not near genes chr3L 26696620 intergenic not near genes chr3L 26697285 intergenic not near genes chr3L_4_26695001 chr3L_26695001 RAL-235 1720 chr3L 27390696 27390712 chr3L 27390768 27390780 4 81 25.5 27.5 26.5 0.1 84 chr3L 27390696 intron Dbp80 + chr3L 27390738 intron Dbp80 + chr3L 27390780 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-235 1721 chr3R 2534144 2534162 chr3R 2541701 2541743 4 7568 3.5 13.5 8.5 0.4 7599 chr3R 2534144 intergenic not near genes chr3R 2537944 intergenic not near genes chr3R 2541743 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-235 1722 chr3R 2998464 2998487 chr3R 2998560 2998561 6 89 3.0 3.5 3.2 1.4 97 chr3R 2998464 intron CG42618 - chr3R 2998512 intron CG42618 - chr3R 2998561 intron CG42618 - chr3R_6_2995001 chr3R_2995001 RAL-235 1723 chr3R 3178696 3178711 chr3R 3595185 3595210 7 416489 7.5 20.0 13.8 0.5 416514 chr3R 3178696 intron CG42617 - chr3R 3386953 intergenic not near genes chr3R 3595210 intergenic not near genes chr3R_7_3385001 chr3R_3385001 RAL-235 1724 chr3R 3916189 3916217 chr3R 3916316 3916334 5 125 20.0 13.0 16.5 0.3 145 chr3R 3916189 intergenic not near genes chr3R 3916262 intergenic not near genes chr3R 3916334 intergenic not near genes chr3R_5_3915001 chr3R_3915001 RAL-235 1725 chr3R 4063808 4063817 chr3R 4069095 4069102 5 5286 12.0 7.0 9.5 0.5 5294 chr3R 4063808 intergenic not near genes chr3R 4066455 intergenic not near genes chr3R 4069102 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-235 1726 chr3R 4132885 4132930 chr3R 4133059 4133104 11 173 1.0 3.5 2.2 3.4 219 chr3R 4132885 5` UTR Gfat1 + chr3R 4132994 intron Gfat1 + chr3R 4133104 intron Gfat1 + chr3R_11_4130001 chr3R_4130001 RAL-235 1727 chr3R 4206068 4206082 chr3R 4211653 4211672 mdg3 4 5590 13.5 5.5 9.5 0.4 5604 chr3R 4206068 intron CG14636 - chr3R 4208870 intron CG14636 - chr3R 4211672 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-235 1728 chr3R 4206085 4206089 chr3R 4211650 4211684 mdg3 6 5582 11.5 4.5 8.0 0.7 5599 chr3R 4206085 intron CG14636 - chr3R 4208884 intron CG14636 - chr3R 4211684 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-235 1729 chr3R 4206091 4206104 chr3R 4211649 4211698 mdg3 8 5581 7.0 4.5 5.8 1.2 5607 chr3R 4206091 intron CG14636 - chr3R 4208894 intron CG14636 - chr3R 4211698 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-235 1730 chr3R 4366748 4366785 chr3R 4375151 4375188 roo 6 8398 6.0 8.0 7.0 0.8 8440 chr3R 4366748 3` UTR CG1090 + chr3R 4370968 intergenic not near genes chr3R 4375188 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-235 1731 chr3R 4408397 4408413 chr3R 4412721 4412722 Juan 7 4319 12.0 10.0 11.0 0.6 4325 chr3R 4408397 intron CG32944 - chr3R 4410560 intron CG32944 - chr3R 4412722 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-235 1732 chr3R 4609540 4609552 chr3R 4610714 4610736 1360 5 1179 11.5 6.5 9.0 0.5 1196 chr3R 4609540 intergenic not near genes chr3R 4610138 intergenic not near genes chr3R 4610736 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-235 1733 chr3R 4609557 4609579 chr3R 4610713 4610760 1360 9 1176 3.5 6.5 5.0 1.5 1203 chr3R 4609557 intergenic not near genes chr3R 4610158 intergenic not near genes chr3R 4610760 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-235 1734 chr3R 4680690 4680720 chr3R 4680789 4680813 11 96 6.0 2.0 4.0 2.2 123 chr3R 4680690 intron CG43427 + chr3R 4680752 intron CG43427 + chr3R 4680813 5` UTR CG43427 + chr3R_11_4680001 chr3R_4680001 RAL-235 1735 chr3R 4733657 4733688 chr3R 4733801 4733829 11 143 10.0 6.0 8.0 1.2 172 chr3R 4733657 intergenic not near genes chr3R 4733743 intergenic not near genes chr3R 4733829 intergenic not near genes chr3R_11_4730001 chr3R_4730001 RAL-235 1736 chr3R 4733690 4733707 chr3R 4733799 4733845 10 135 5.0 5.5 5.2 1.6 155 chr3R 4733690 intergenic not near genes chr3R 4733768 intergenic not near genes chr3R 4733845 intergenic not near genes chr3R_10_4730001 chr3R_4730001 RAL-235 1737 chr3R 4753252 4753262 chr3R 4757543 4757561 F-element 6 4308 5.0 5.0 5.0 1.0 4309 chr3R 4753252 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757561 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-235 1738 chr3R 4769153 4769187 chr3R 4769249 4769282 8 95 2.5 7.5 5.0 1.3 129 chr3R 4769153 intron,intron atms +,CG44098 - chr3R 4769218 intron,intron atms +,CG44098 - chr3R 4769282 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-235 1739 chr3R 4796108 4796149 chr3R 4796234 4796284 12 137 4.0 4.0 4.0 2.4 176 chr3R 4796108 intron ctrip - chr3R 4796196 intron ctrip - chr3R 4796284 intron ctrip - chr3R_12_4795001 chr3R_4795001 RAL-235 1740 chr3R 4861558 4861583 chr3R 4861648 4861651 4 80 3.0 3.0 3.0 1.0 93 chr3R 4861558 intron opa + chr3R 4861604 intron opa + chr3R 4861651 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-235 1741 chr3R 4922328 4922363 chr3R 4922421 4922449 13 94 3.0 1.5 2.2 4.1 121 chr3R 4922328 intron Cdep + chr3R 4922388 intron Cdep + chr3R 4922449 intron Cdep + chr3R_13_4920001 chr3R_4920001 RAL-235 1742 chr3R 4943595 4943618 chr3R 4943719 4943737 11 120 15.0 4.0 9.5 1.0 142 chr3R 4943595 intron Cdep + chr3R 4943666 intron Cdep + chr3R 4943737 intron Cdep + chr3R_11_4940001 chr3R_4940001 RAL-235 1743 chr3R 4948373 4948391 chr3R 4949008 4949023 11 640 28.0 14.0 21.0 0.5 650 chr3R 4948373 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948698 intergenic UbcD6 - chr3R 4949023 3` UTR UbcD6 - chr3R_11_4945001 chr3R_4945001 RAL-235 1744 chr3R 4979984 4980016 chr3R 4980072 4980112 7 90 1.5 2.5 2.0 2.3 128 chr3R 4979984 intergenic not near genes chr3R 4980048 intergenic not near genes chr3R 4980112 intergenic not near genes chr3R_7_4980001 chr3R_4980001 RAL-235 1745 chr3R 5029564 5029596 chr3R 5029975 5029992 8 401 4.5 2.0 3.2 1.9 428 chr3R 5029564 intergenic not near genes chr3R 5029778 intergenic not near genes chr3R 5029992 intergenic not near genes chr3R_8_5025001 chr3R_5025001 RAL-235 1746 chr3R 5045829 5045875 chr3R 5052946 5052997 HMS-Beagle 23 7121 7.0 3.5 5.2 3.7 7168 chr3R 5045829 3` UTR CR43635 - chr3R 5049413 intergenic not near genes chr3R 5052997 intergenic CR45588 - chr3R_23_5045001 chr3R_5045001 RAL-235 1747 chr3R 5067969 5068009 chr3R 5073505 5073545 mdg3 18 5533 8.5 0.0 4.2 3.5 5576 chr3R 5067969 intergenic not near genes chr3R 5070757 intergenic not near genes chr3R 5073545 intergenic not near genes chr3R_18_5070001 chr3R_5070001 RAL-235 1748 chr3R 5162920 5162965 chr3R 5163087 5163136 17 168 7.5 3.5 5.5 2.6 216 chr3R 5162920 intron dpr16 + chr3R 5163028 intron dpr16 + chr3R 5163136 intron dpr16 + chr3R_17_5160001 chr3R_5160001 RAL-235 1749 chr3R 5208433 5208460 chr3R 5213074 5213105 7 4634 23.0 30.0 26.5 0.3 4672 chr3R 5208433 intron cno - chr3R 5210769 intron cno - chr3R 5213105 intron cno - chr3R_7_5210001 chr3R_5210001 RAL-235 1750 chr3R 5278072 5278111 chr3R 5278173 5278212 13 97 5.5 4.0 4.8 2.2 140 chr3R 5278072 intron mtd - chr3R 5278142 intron mtd - chr3R 5278212 intron mtd - chr3R_13_5275001 chr3R_5275001 RAL-235 1751 chr3R 5278112 5278120 chr3R 5278169 5278190 6 87 4.0 4.0 4.0 1.2 78 chr3R 5278112 intron mtd - chr3R 5278151 intron mtd - chr3R 5278190 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-235 1752 chr3R 5385951 5386001 chr3R 5386142 5386192 13 187 1.5 3.5 2.5 3.7 241 chr3R 5385951 intron kkv - chr3R 5386072 intron kkv - chr3R 5386192 intron kkv - chr3R_13_5385001 chr3R_5385001 RAL-235 1753 chr3R 5445964 5445992 chr3R 5452423 5452462 Burdock 4 6472 4.5 4.5 4.5 0.7 6498 chr3R 5445964 intron CG14669 + chr3R 5449213 intron CG14669 + chr3R 5452462 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-235 1754 chr3R 5627136 5627179 chr3R 5627565 5627579 10 426 4.0 3.0 3.5 2.2 443 chr3R 5627136 intergenic not near genes chr3R 5627358 intergenic CG31551 + chr3R 5627579 intergenic CG31551 + chr3R_10_5625001 chr3R_5625001 RAL-235 1755 chr3R 5696134 5696144 chr3R 5696248 5696260 5 115 2.5 6.0 4.2 1.0 126 chr3R 5696134 intron plx + chr3R 5696197 intron plx + chr3R 5696260 intron plx + chr3R_5_5695001 chr3R_5695001 RAL-235 1756 chr3R 5726069 5726123 chr3R 5726251 5726274 18 176 5.0 3.0 4.0 3.6 205 chr3R 5726069 intergenic not near genes chr3R 5726172 intergenic not near genes chr3R 5726274 intergenic not near genes chr3R_18_5725001 chr3R_5725001 RAL-235 1757 chr3R 5746012 5746045 chr3R 5746256 5746306 pogo 13 255 4.0 5.0 4.5 2.4 294 chr3R 5746012 3` UTR Madm + chr3R 5746159 3` UTR Madm + chr3R 5746306 3` UTR Madm + chr3R_13_5745001 chr3R_5745001 RAL-235 1758 chr3R 5747022 5747040 chr3R 5753208 5753246 diver 10 6204 7.5 4.5 6.0 1.4 6224 chr3R 5747022 intergenic Madm + chr3R 5750134 intergenic not near genes chr3R 5753246 intergenic CG2091 - chr3R_10_5750001 chr3R_5750001 RAL-235 1759 chr3R 5772357 5772409 chr3R 5772535 5772587 20 177 4.0 3.5 3.8 4.2 230 chr3R 5772357 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772587 intron CG2082 - chr3R_20_5770001 chr3R_5770001 RAL-235 1760 chr3R 5809108 5809145 chr3R 5809354 5809386 pogo 13 256 4.5 6.0 5.2 2.1 278 chr3R 5809108 3` UTR CG11000 + chr3R 5809247 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_13_5805001 chr3R_5805001 RAL-235 1761 chr3R 5822367 5822384 chr3R 5823554 5823571 1360 8 1185 6.5 6.5 6.5 1.1 1204 chr3R 5822367 3` UTR CG2023 - chr3R 5822969 3` UTR CG2023 - chr3R 5823571 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-235 1762 chr3R 5822385 5822409 chr3R 5823552 5823576 1360 13 1176 4.5 6.0 5.2 2.1 1191 chr3R 5822385 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_13_5820001 chr3R_5820001 RAL-235 1763 chr3R 5860581 5860582 chr3R 5860679 5860705 4 116 5.0 11.5 8.2 0.4 124 chr3R 5860581 intron CG2017 - chr3R 5860643 intron CG2017 - chr3R 5860705 intron CG2017 - chr3R_4_5860001 chr3R_5860001 RAL-235 1764 chr3R 5896985 5896994 chr3R 5897333 5897372 4 365 5.0 7.0 6.0 0.6 387 chr3R 5896985 intron CG34113 - chr3R 5897178 intron CG34113 - chr3R 5897372 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-235 1765 chr3R 5927543 5927589 chr3R 5927801 5927845 pogo 11 253 2.0 6.0 4.0 2.2 302 chr3R 5927543 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927845 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-235 1766 chr3R 5931849 5931871 chr3R 5931930 5931960 5 85 3.5 5.0 4.2 1.0 111 chr3R 5931849 intron CG34113 - chr3R 5931904 intron CG34113 - chr3R 5931960 intron CG34113 - chr3R_5_5930001 chr3R_5930001 RAL-235 1767 chr3R 5943383 5943415 chr3R 5943482 5943514 8 92 3.0 3.5 3.2 1.9 131 chr3R 5943383 intron CG34113 - chr3R 5943448 intron CG34113 - chr3R 5943514 intron CG34113 - chr3R_8_5940001 chr3R_5940001 RAL-235 1768 chr3R 5988905 5988933 chr3R 5989108 5989153 4 211 0.5 3.0 1.8 1.4 248 chr3R 5988905 intergenic CR44927 + chr3R 5989029 intergenic CR44927 + chr3R 5989153 intergenic CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-235 1769 chr3R 5991478 5991483 chr3R 5991562 5991586 4 94 1.0 3.0 2.0 1.3 108 chr3R 5991478 intergenic not near genes chr3R 5991532 intergenic not near genes chr3R 5991586 intergenic not near genes chr3R_4_5990001 chr3R_5990001 RAL-235 1770 chr3R 5999471 5999496 chr3R 5999557 5999576 8 96 4.5 5.0 4.8 1.4 105 chr3R 5999471 intergenic not near genes chr3R 5999524 intergenic not near genes chr3R 5999576 intergenic not near genes chr3R_8_5995001 chr3R_5995001 RAL-235 1771 chr3R 6015569 6015579 chr3R 6015666 6015676 4 96 1.0 13.5 7.2 0.5 107 chr3R 6015569 intergenic not near genes chr3R 6015622 intergenic not near genes chr3R 6015676 intergenic not near genes chr3R_4_6015001 chr3R_6015001 RAL-235 1772 chr3R 6015949 6015993 chr3R 6024450 6024452 Tirant 6 8490 1.5 1.0 1.2 2.7 8503 chr3R 6015949 intergenic not near genes chr3R 6020200 intergenic not near genes chr3R 6024452 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-235 1773 chr3R 6048434 6048474 chr3R 6048526 6048577 14 95 4.0 3.0 3.5 3.1 143 chr3R 6048434 intergenic not near genes chr3R 6048506 intergenic not near genes chr3R 6048577 intergenic not near genes chr3R_14_6045001 chr3R_6045001 RAL-235 1774 chr3R 6154117 6154148 chr3R 6154271 6154315 11 150 2.0 2.0 2.0 3.7 198 chr3R 6154117 intron CG31559 - chr3R 6154216 intron CG31559 - chr3R 6154315 intron CG31559 - chr3R_11_6150001 chr3R_6150001 RAL-235 1775 chr3R 6175151 6175205 chr3R 6182443 6182497 HMS-Beagle2 21 7289 4.5 6.5 5.5 3.2 7346 chr3R 6175151 intergenic Osi1 + chr3R 6178824 intron CR45194 + chr3R 6182497 intergenic CR45194 + chr3R_21_6175001 chr3R_6175001 RAL-235 1776 chr3R 6183471 6183508 chr3R 6183596 6183618 5 104 1.5 2.0 1.8 1.8 147 chr3R 6183471 intergenic not near genes chr3R 6183544 intergenic not near genes chr3R 6183618 intergenic not near genes chr3R_5_6180001 chr3R_6180001 RAL-235 1777 chr3R 6217004 6217033 chr3R 6217244 6217294 10 249 3.5 8.0 5.8 1.5 290 chr3R 6217004 intron Osi3 + chr3R 6217149 intron Osi3 + chr3R 6217294 intron Osi3 + chr3R_10_6215001 chr3R_6215001 RAL-235 1778 chr3R 6428789 6428844 chr3R 6428911 6428946 16 117 4.0 3.5 3.8 3.3 157 chr3R 6428789 intron gpp + chr3R 6428868 intron gpp + chr3R 6428946 intron gpp + chr3R_16_6425001 chr3R_6425001 RAL-235 1779 chr3R 6474795 6474840 chr3R 6474892 6474927 11 94 4.5 1.5 3.0 2.8 132 chr3R 6474795 intergenic not near genes chr3R 6474861 intergenic not near genes chr3R 6474927 intergenic not near genes chr3R_11_6470001 chr3R_6470001 RAL-235 1780 chr3R 6496448 6496492 chr3R 6496552 6496596 10 101 5.0 4.0 4.5 1.8 148 chr3R 6496448 intergenic not near genes chr3R 6496522 intergenic not near genes chr3R 6496596 intergenic not near genes chr3R_10_6495001 chr3R_6495001 RAL-235 1781 chr3R 6510020 6510040 chr3R 6515111 6515130 jockey 8 5096 9.0 6.5 7.8 0.9 5110 chr3R 6510020 intergenic not near genes chr3R 6512575 intergenic not near genes chr3R 6515130 intergenic not near genes chr3R_8_6510001 chr3R_6510001 RAL-235 1782 chr3R 6510041 6510055 chr3R 6515104 6515130 jockey 4 5085 5.5 4.5 5.0 0.7 5089 chr3R 6510041 intergenic not near genes chr3R 6512586 intergenic not near genes chr3R 6515130 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-235 1783 chr3R 6737488 6737527 chr3R 6739284 6739334 Doc 7 1803 1.0 1.0 1.0 3.5 1846 chr3R 6737488 intron pb - chr3R 6738411 intron pb - chr3R 6739334 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-235 1784 chr3R 6780429 6780481 chr3R 6780532 6780582 13 101 4.0 5.5 4.8 2.2 153 chr3R 6780429 intergenic not near genes chr3R 6780506 intergenic not near genes chr3R 6780582 intergenic not near genes chr3R_13_6780001 chr3R_6780001 RAL-235 1785 chr3R 6782444 6782469 chr3R 6782514 6782568 7 87 3.5 7.5 5.5 1.1 124 chr3R 6782444 intergenic not near genes chr3R 6782506 intergenic not near genes chr3R 6782568 intergenic not near genes chr3R_7_6780001 chr3R_6780001 RAL-235 1786 chr3R 6807247 6807296 chr3R 6807349 6807398 12 102 4.0 4.5 4.2 2.3 151 chr3R 6807247 intergenic not near genes chr3R 6807322 intergenic not near genes chr3R 6807398 intergenic not near genes chr3R_12_6805001 chr3R_6805001 RAL-235 1787 chr3R 6828005 6828031 chr3R 6828101 6828127 6 94 9.5 3.0 6.2 0.8 122 chr3R 6828005 intron Scr - chr3R 6828066 intron Scr - chr3R 6828127 intron Scr - chr3R_6_6825001 chr3R_6825001 RAL-235 1788 chr3R 6856369 6856400 chr3R 6856500 6856537 10 135 2.5 4.5 3.5 2.2 168 chr3R 6856369 intergenic not near genes chr3R 6856453 intergenic not near genes chr3R 6856537 intergenic not near genes chr3R_10_6855001 chr3R_6855001 RAL-235 1789 chr3R 6862200 6862253 chr3R 6862307 6862352 15 103 2.5 3.5 3.0 3.8 152 chr3R 6862200 intergenic not near genes chr3R 6862276 intergenic not near genes chr3R 6862352 intergenic not near genes chr3R_15_6860001 chr3R_6860001 RAL-235 1790 chr3R 6961181 6961201 chr3R 6961275 6961300 6 98 3.5 6.5 5.0 1.0 119 chr3R 6961181 intron Antp - chr3R 6961240 intron Antp - chr3R 6961300 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-235 1791 chr3R 7030682 7030700 chr3R 7030778 7030796 10 95 12.0 6.5 9.2 1.0 114 chr3R 7030682 intergenic not near genes chr3R 7030739 intergenic not near genes chr3R 7030796 intergenic not near genes chr3R_10_7030001 chr3R_7030001 RAL-235 1792 chr3R 7030701 7030730 chr3R 7030777 7030824 12 91 3.5 6.5 5.0 2.0 123 chr3R 7030701 intergenic not near genes chr3R 7030762 intergenic not near genes chr3R 7030824 intergenic not near genes chr3R_12_7030001 chr3R_7030001 RAL-235 1793 chr3R 7103288 7103317 chr3R 7103361 7103384 9 79 4.0 3.0 3.5 2.0 96 chr3R 7103288 intron Alh - chr3R 7103336 intron Alh - chr3R 7103384 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-235 1794 chr3R 7126484 7126531 chr3R 7126599 7126646 21 111 5.5 7.5 6.5 2.8 162 chr3R 7126484 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126565 3` UTR CG10068 - chr3R 7126646 3` UTR CG10068 - chr3R_21_7125001 chr3R_7125001 RAL-235 1795 chr3R 7173662 7173708 chr3R 7173762 7173808 16 98 5.0 6.5 5.8 2.4 146 chr3R 7173662 intron sas + chr3R 7173735 intron sas + chr3R 7173808 intron sas + chr3R_16_7170001 chr3R_7170001 RAL-235 1796 chr3R 7372991 7373023 chr3R 7373084 7373114 4 86 3.5 3.5 3.5 0.9 123 chr3R 7372991 intergenic not near genes chr3R 7373052 intergenic not near genes chr3R 7373114 intergenic not near genes chr3R_4_7370001 chr3R_7370001 RAL-235 1797 chr3R 7385580 7385609 chr3R 7385657 7385698 8 73 1.5 3.0 2.2 2.5 118 chr3R 7385580 intergenic not near genes chr3R 7385639 intergenic not near genes chr3R 7385698 intergenic not near genes chr3R_8_7385001 chr3R_7385001 RAL-235 1798 chr3R 7447979 7448012 chr3R 7448077 7448100 13 95 6.0 11.0 8.5 1.4 121 chr3R 7447979 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448100 intergenic not near genes chr3R_13_7445001 chr3R_7445001 RAL-235 1799 chr3R 7511766 7511791 chr3R 7511867 7511891 8 100 7.0 9.0 8.0 0.9 125 chr3R 7511766 intron alpha-Est8 - chr3R 7511828 intron alpha-Est8 - chr3R 7511891 intron alpha-Est8 - chr3R_8_7510001 chr3R_7510001 RAL-235 1800 chr3R 7552947 7552984 chr3R 7553055 7553077 7 105 5.0 6.0 5.5 1.1 130 chr3R 7552947 intergenic not near genes chr3R 7553012 intergenic not near genes chr3R 7553077 intergenic not near genes chr3R_7_7550001 chr3R_7550001 RAL-235 1801 chr3R 7589808 7589828 chr3R 7589944 7589951 4 135 3.5 11.5 7.5 0.5 143 chr3R 7589808 intron CG34127 - chr3R 7589880 intron CG34127 - chr3R 7589951 intron CG34127 - chr3R_4_7585001 chr3R_7585001 RAL-235 1802 chr3R 7625297 7625318 chr3R 7625750 7625786 9 465 4.0 3.5 3.8 1.9 489 chr3R 7625297 intron CG34127 - chr3R 7625542 intron CG34127 - chr3R 7625786 intron CG34127 - chr3R_9_7625001 chr3R_7625001 RAL-235 1803 chr3R 7654990 7655039 chr3R 7655092 7655104 9 87 2.0 4.0 3.0 2.2 114 chr3R 7654990 intergenic not near genes chr3R 7655047 intergenic not near genes chr3R 7655104 intergenic not near genes chr3R_9_7655001 chr3R_7655001 RAL-235 1804 chr3R 7677896 7677945 chr3R 7678028 7678070 12 123 3.0 1.5 2.2 3.8 174 chr3R 7677896 intron Nlg1 + chr3R 7677983 intron Nlg1 + chr3R 7678070 intron Nlg1 + chr3R_12_7675001 chr3R_7675001 RAL-235 1805 chr3R 7726158 7726174 chr3R 7726240 7726249 7 91 3.0 2.5 2.8 1.8 91 chr3R 7726158 intergenic not near genes chr3R 7726204 intergenic not near genes chr3R 7726249 intergenic not near genes chr3R_7_7725001 chr3R_7725001 RAL-235 1806 chr3R 7729457 7729498 chr3R 7737404 7737441 Stalker2 21 7953 3.5 5.5 4.5 3.8 7984 chr3R 7729457 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737441 intergenic not near genes chr3R_21_7730001 chr3R_7730001 RAL-235 1807 chr3R 7770361 7770373 chr3R 7770537 7770550 7 178 8.0 6.5 7.2 0.9 189 chr3R 7770361 intergenic CG11286 - chr3R 7770456 intergenic CG11286 - chr3R 7770550 intergenic CG11286 - chr3R_7_7770001 chr3R_7770001 RAL-235 1808 chr3R 7770375 7770389 chr3R 7770536 7770567 4 174 5.0 6.0 5.5 0.6 192 chr3R 7770375 intergenic CG11286 - chr3R 7770471 intergenic CG11286 - chr3R 7770567 intergenic CG11286 - chr3R_4_7770001 chr3R_7770001 RAL-235 1809 chr3R 7793323 7793375 chr3R 7793419 7793443 10 84 1.5 1.0 1.2 4.5 120 chr3R 7793323 3` UTR CG10086 + chr3R 7793383 3` UTR CG10086 + chr3R 7793443 3` UTR CG10086 + chr3R_10_7790001 chr3R_7790001 RAL-235 1810 chr3R 7823926 7823968 chr3R 7824021 7824073 16 102 2.0 2.0 2.0 5.3 147 chr3R 7823926 intron CG34384 + chr3R 7824000 intron CG34384 + chr3R 7824073 intron CG34384 + chr3R_16_7820001 chr3R_7820001 RAL-235 1811 chr3R 7773344 7773344 chr3R 7890533 7890535 4 117190 20.0 7.5 13.8 0.3 117191 chr3R 7773344 intergenic not near genes chr3R 7831940 intron CG34384 + chr3R 7890535 intron mRpS9 - chr3R_4_7830001 chr3R_7830001 RAL-235 1812 chr3R 7965302 7965324 chr3R 7965409 7965427 7 104 8.5 8.5 8.5 0.7 125 chr3R 7965302 intron dsx - chr3R 7965364 intron dsx - chr3R 7965427 intron dsx - chr3R_7_7965001 chr3R_7965001 RAL-235 1813 chr3R 7973327 7973349 chr3R 7974378 7974431 1360 12 1080 2.5 3.0 2.8 3.2 1104 chr3R 7973327 intergenic not near genes chr3R 7973879 intergenic not near genes chr3R 7974431 3` UTR CD98hc - chr3R_12_7970001 chr3R_7970001 RAL-235 1814 chr3R 8090565 8090571 chr3R 8094043 8094052 297 5 3486 4.5 9.0 6.8 0.6 3487 chr3R 8090565 intergenic CR44330 + chr3R 8092308 intergenic not near genes chr3R 8094052 intergenic CG7900 + chr3R_5_8090001 chr3R_8090001 RAL-235 1815 chr3R 8094386 8094434 chr3R 8099711 8099759 Transpac 16 5323 3.0 4.5 3.8 3.3 5373 chr3R 8094386 intron CG7900 + chr3R 8097072 intron CG7900 + chr3R 8099759 intron CG7900 + chr3R_16_8095001 chr3R_8095001 RAL-235 1816 chr3R 8247885 8247918 chr3R 8247981 8248019 11 99 6.5 6.0 6.2 1.5 134 chr3R 8247885 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8247952 intron,intron CG18749 +,CG33722 + chr3R 8248019 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_11_8245001 chr3R_8245001 RAL-235 1817 chr3R 8253793 8253831 chr3R 8254053 8254102 16 270 4.0 5.5 4.8 2.8 309 chr3R 8253793 intron mtg + chr3R 8253948 intron mtg + chr3R 8254102 intron mtg + chr3R_16_8250001 chr3R_8250001 RAL-235 1818 chr3R 8283867 8283916 chr3R 8283971 8284013 12 99 5.0 2.5 3.8 2.5 146 chr3R 8283867 intergenic not near genes chr3R 8283940 intergenic not near genes chr3R 8284013 intergenic not near genes chr3R_12_8280001 chr3R_8280001 RAL-235 1819 chr3R 8403005 8403026 chr3R 8412180 8412202 roo 4 9180 4.5 3.5 4.0 0.8 9197 chr3R 8403005 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412202 intron CG45263 - chr3R_4_8405001 chr3R_8405001 RAL-235 1820 chr3R 8403029 8403037 chr3R 8412178 8412198 roo 5 9160 4.0 3.0 3.5 1.1 9169 chr3R 8403029 intron CG45263 - chr3R 8407614 intron CG45263 - chr3R 8412198 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-235 1821 chr3R 8478171 8478211 chr3R 8478416 8478463 7 244 1.5 2.0 1.8 2.5 292 chr3R 8478171 intergenic not near genes chr3R 8478317 intergenic not near genes chr3R 8478463 intergenic not near genes chr3R_7_8475001 chr3R_8475001 RAL-235 1822 chr3R 8541322 8541367 chr3R 8541421 8541463 7 95 2.0 1.5 1.8 2.5 141 chr3R 8541322 intergenic not near genes chr3R 8541392 intergenic not near genes chr3R 8541463 intergenic not near genes chr3R_7_8540001 chr3R_8540001 RAL-235 1823 chr3R 8570477 8570508 chr3R 8575114 8575162 HMS-Beagle 6 4650 4.5 4.5 4.5 1.1 4685 chr3R 8570477 intergenic not near genes chr3R 8572820 intergenic not near genes chr3R 8575162 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-235 1824 chr3R 8601769 8601797 chr3R 8610924 8610970 roo 8 9170 4.5 3.5 4.0 1.6 9201 chr3R 8601769 intron 5-HT2B + chr3R 8606370 intron 5-HT2B + chr3R 8610970 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-235 1825 chr3R 8636920 8636963 chr3R 8637236 8637286 14 316 2.0 3.5 2.8 3.7 366 chr3R 8636920 intergenic not near genes chr3R 8637103 intergenic not near genes chr3R 8637286 intergenic not near genes chr3R_14_8635001 chr3R_8635001 RAL-235 1826 chr3R 8707367 8707388 chr3R 8709828 8709829 jockey 4 2453 1.5 9.0 5.2 0.6 2462 chr3R 8707367 intergenic not near genes chr3R 8708598 intergenic not near genes chr3R 8709829 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-235 1827 chr3R 8740233 8740268 chr3R 8740340 8740377 4 107 3.0 1.0 2.0 1.3 144 chr3R 8740233 intron CG9801 - chr3R 8740305 intron CG9801 - chr3R 8740377 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-235 1828 chr3R 8745733 8745775 chr3R 8745859 8745906 18 128 5.5 2.0 3.8 3.8 173 chr3R 8745733 intron CG9801 - chr3R 8745820 intron CG9801 - chr3R 8745906 intron CG9801 - chr3R_18_8745001 chr3R_8745001 RAL-235 1829 chr3R 8756271 8756319 chr3R 8756367 8756415 20 91 4.5 4.0 4.2 3.8 144 chr3R 8756271 intron,intron CG11768 -,CG34135 - chr3R 8756343 intron,intron CG11768 -,CG34135 - chr3R 8756415 intron,intron CG11768 -,CG34135 - chr3R_20_8755001 chr3R_8755001 RAL-235 1830 chr3R 8843952 8843994 chr3R 8844539 8844585 15 583 18.0 20.0 19.0 0.8 633 chr3R 8843952 intron pyd - chr3R 8844268 intron pyd - chr3R 8844585 intron pyd - chr3R_15_8840001 chr3R_8840001 RAL-235 1831 chr3R 8843833 8843859 chr3R 8844960 8844986 5 1123 27.0 38.5 32.8 0.1 1153 chr3R 8843833 intron pyd - chr3R 8844410 intron pyd - chr3R 8844986 intron pyd - chr3R_5_8840001 chr3R_8840001 RAL-235 1832 chr3R 8875561 8875571 chr3R 8875615 8875668 4 67 2.0 5.5 3.8 0.8 107 chr3R 8875561 intron pyd - chr3R 8875614 intron pyd - chr3R 8875668 intron pyd - chr3R_4_8875001 chr3R_8875001 RAL-235 1833 chr3R 8917877 8917911 chr3R 8917970 8918001 12 98 2.5 5.5 4.0 2.4 124 chr3R 8917877 intron pyd - chr3R 8917939 intron pyd - chr3R 8918001 intron pyd - chr3R_12_8915001 chr3R_8915001 RAL-235 1834 chr3R 9036703 9036747 chr3R 9036819 9036863 15 113 2.5 4.5 3.5 3.3 160 chr3R 9036703 intron neur - chr3R 9036783 intron neur - chr3R 9036863 intron neur - chr3R_15_9035001 chr3R_9035001 RAL-235 1835 chr3R 9066183 9066194 chr3R 9066278 9066280 4 93 10.0 7.0 8.5 0.4 97 chr3R 9066183 exon Ada + chr3R 9066232 exon Ada + chr3R 9066280 3` UTR Ada + chr3R_4_9065001 chr3R_9065001 RAL-235 1836 chr3R 9066195 9066214 chr3R 9066269 9066304 11 90 6.0 5.0 5.5 1.7 109 chr3R 9066195 exon Ada + chr3R 9066250 exon Ada + chr3R 9066304 intergenic Ada +,pum - chr3R_11_9065001 chr3R_9065001 RAL-235 1837 chr3R 9066757 9066797 chr3R 9066862 9066896 14 101 4.0 4.0 4.0 2.8 139 chr3R 9066757 3` UTR pum - chr3R 9066826 3` UTR pum - chr3R 9066896 3` UTR pum - chr3R_14_9065001 chr3R_9065001 RAL-235 1838 chr3R 9082038 9082071 chr3R 9082146 9082185 5 110 3.0 4.0 3.5 1.1 147 chr3R 9082038 intron pum - chr3R 9082112 intron pum - chr3R 9082185 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-235 1839 chr3R 9085066 9085082 chr3R 9085393 9085424 6 334 2.0 6.0 4.0 1.2 358 chr3R 9085066 intron pum - chr3R 9085245 intron pum - chr3R 9085424 intron pum - chr3R_6_9085001 chr3R_9085001 RAL-235 1840 chr3R 9102280 9102307 chr3R 9102368 9102404 7 93 4.5 2.0 3.2 1.7 124 chr3R 9102280 intron pum - chr3R 9102342 intron pum - chr3R 9102404 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-235 1841 chr3R 9108848 9108876 chr3R 9108942 9108958 13 92 7.0 4.0 5.5 2.0 110 chr3R 9108848 intron pum - chr3R 9108903 intron pum - chr3R 9108958 intron pum - chr3R_13_9105001 chr3R_9105001 RAL-235 1842 chr3R 9146765 9146801 chr3R 9146853 9146895 11 94 3.0 2.5 2.8 2.9 130 chr3R 9146765 intron pum - chr3R 9146830 intron pum - chr3R 9146895 intron pum - chr3R_11_9145001 chr3R_9145001 RAL-235 1843 chr3R 9227928 9227961 chr3R 9228052 9228080 16 125 4.0 5.5 4.8 2.8 152 chr3R 9227928 intron pum - chr3R 9228004 intron pum - chr3R 9228080 intron pum - chr3R_16_9225001 chr3R_9225001 RAL-235 1844 chr3R 9278785 9278807 chr3R 9284039 9284075 Rt1a 7 5271 2.5 3.5 3.0 1.8 5290 chr3R 9278785 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284075 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-235 1845 chr3R 9294999 9295048 chr3R 9295097 9295146 21 97 3.5 6.0 4.8 3.6 147 chr3R 9294999 3` UTR CG8861 - chr3R 9295072 3` UTR CG8861 - chr3R 9295146 3` UTR CG8861 - chr3R_21_9295001 chr3R_9295001 RAL-235 1846 chr3R 9303103 9303148 chr3R 9303199 9303229 4 92 3.5 3.5 3.5 0.9 126 chr3R 9303103 intron CG8861 - chr3R 9303166 intron CG8861 - chr3R 9303229 intron CG8861 - chr3R_4_9300001 chr3R_9300001 RAL-235 1847 chr3R 9319556 9319602 chr3R 9320011 9320057 jockey 14 454 7.0 4.5 5.8 2.1 501 chr3R 9319556 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320057 intron CG8861 - chr3R_14_9315001 chr3R_9315001 RAL-235 1848 chr3R 9361804 9361846 chr3R 9362065 9362093 pogo 15 256 3.0 5.0 4.0 3.0 289 chr3R 9361804 3` UTR CG45050 + chr3R 9361948 3` UTR CG45050 + chr3R 9362093 3` UTR CG45050 + chr3R_15_9360001 chr3R_9360001 RAL-235 1849 chr3R 9382809 9382843 chr3R 9382949 9382988 10 143 5.0 7.5 6.2 1.4 179 chr3R 9382809 intron FER - chr3R 9382898 intron FER - chr3R 9382988 intron FER - chr3R_10_9380001 chr3R_9380001 RAL-235 1850 chr3R 9645256 9645281 chr3R 9645323 9645326 5 57 7.0 4.0 5.5 0.8 70 chr3R 9645256 intron,3` UTR Dh44 +,Fst - chr3R 9645291 intron,exon Dh44 +,Fst - chr3R 9645326 intron,exon Dh44 +,Fst - chr3R_5_9645001 chr3R_9645001 RAL-235 1851 chr3R 9651250 9651288 chr3R 9651348 9651385 10 86 4.5 3.5 4.0 2.0 135 chr3R 9651250 3` UTR CG9492 - chr3R 9651318 3` UTR CG9492 - chr3R 9651385 3` UTR CG9492 - chr3R_10_9650001 chr3R_9650001 RAL-235 1852 chr3R 9668659 9668700 chr3R 9668757 9668798 15 97 4.0 4.0 4.0 3.0 139 chr3R 9668659 intron CG9492 - chr3R 9668728 intron CG9492 - chr3R 9668798 intron CG9492 - chr3R_15_9665001 chr3R_9665001 RAL-235 1853 chr3R 9702243 9702288 chr3R 9702338 9702384 15 94 4.0 2.0 3.0 3.8 141 chr3R 9702243 intron Unc-115a - chr3R 9702314 intron Unc-115a - chr3R 9702384 intron Unc-115a - chr3R_15_9700001 chr3R_9700001 RAL-235 1854 chr3R 9830768 9830794 chr3R 9830958 9830988 7 196 7.0 4.0 5.5 1.1 220 chr3R 9830768 intron Teh1 - chr3R 9830878 intron Teh1 - chr3R 9830988 intron Teh1 - chr3R_7_9830001 chr3R_9830001 RAL-235 1855 chr3R 9858665 9858683 chr3R 9858783 9858801 12 118 5.5 4.5 5.0 2.0 136 chr3R 9858665 intron Teh1 - chr3R 9858733 intron Teh1 - chr3R 9858801 intron Teh1 - chr3R_12_9855001 chr3R_9855001 RAL-235 1856 chr3R 9898802 9898814 chr3R 9898885 9898926 4 97 2.0 4.5 3.2 1.0 124 chr3R 9898802 intron Glut4EF + chr3R 9898864 intron Glut4EF + chr3R 9898926 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-235 1857 chr3R 9914969 9914988 chr3R 9915083 9915088 4 110 7.0 0.5 3.8 0.8 119 chr3R 9914969 intron Glut4EF + chr3R 9915028 intron Glut4EF + chr3R 9915088 intron Glut4EF + chr3R_4_9915001 chr3R_9915001 RAL-235 1858 chr3R 10073768 10073795 chr3R 10073896 10073924 12 128 5.0 6.0 5.5 1.8 156 chr3R 10073768 intergenic nerfin-2 +,CG5361 - chr3R 10073846 3` UTR CG5361 - chr3R 10073924 exon CG5361 - chr3R_12_10070001 chr3R_10070001 RAL-235 1859 chr3R 10133480 10133524 chr3R 10133578 10133610 8 94 2.0 0.5 1.2 3.6 130 chr3R 10133480 intron tws - chr3R 10133545 intron tws - chr3R 10133610 intron tws - chr3R_8_10130001 chr3R_10130001 RAL-235 1860 chr3R 10150987 10151030 chr3R 10151076 10151095 8 88 3.5 5.0 4.2 1.5 108 chr3R 10150987 intron Invadolysin + chr3R 10151041 intron Invadolysin + chr3R 10151095 intron Invadolysin + chr3R_8_10150001 chr3R_10150001 RAL-235 1861 chr3R 10192273 10192296 chr3R 10192479 10192495 7 203 5.5 4.0 4.8 1.2 222 chr3R 10192273 intron Syn + chr3R 10192384 intron Syn + chr3R 10192495 intron Syn + chr3R_7_10190001 chr3R_10190001 RAL-235 1862 chr3R 10231762 10231814 chr3R 10237359 10237382 mdg3 15 5591 3.5 6.0 4.8 2.6 5620 chr3R 10231762 intron CG42795 + chr3R 10234572 intron CG42795 + chr3R 10237382 intron CG42795 + chr3R_15_10230001 chr3R_10230001 RAL-235 1863 chr3R 10255359 10255384 chr3R 10260819 10260839 I-element 8 5459 10.0 5.0 7.5 0.9 5480 chr3R 10255359 3` UTR Sirt6 - chr3R 10258099 intron Sirt6 - chr3R 10260839 exon Sirt6 - chr3R_8_10255001 chr3R_10255001 RAL-235 1864 chr3R 10531858 10531886 chr3R 10531954 10531976 7 99 9.5 0.5 5.0 1.2 118 chr3R 10531858 intron hth - chr3R 10531917 intron hth - chr3R 10531976 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-235 1865 chr3R 10535316 10535343 chr3R 10535429 10535456 9 112 1.0 0.0 0.5 6.0 140 chr3R 10535316 intron hth - chr3R 10535386 intron hth - chr3R 10535456 intron hth - chr3R_9_10535001 chr3R_10535001 RAL-235 1866 chr3R 10593427 10593455 chr3R 10593522 10593551 9 95 2.5 2.5 2.5 2.6 124 chr3R 10593427 intron hth - chr3R 10593489 intron hth - chr3R 10593551 exon hth - chr3R_9_10590001 chr3R_10590001 RAL-235 1867 chr3R 10641576 10641613 chr3R 10641673 10641708 6 94 4.0 2.5 3.2 1.4 132 chr3R 10641576 5` UTR CR44018 + chr3R 10641642 5` UTR CR44018 + chr3R 10641708 5` UTR CR44018 + chr3R_6_10640001 chr3R_10640001 RAL-235 1868 chr3R 10646108 10646136 chr3R 10646256 10646297 8 162 4.0 4.0 4.0 1.6 189 chr3R 10646108 intergenic CR44018 + chr3R 10646202 intergenic CR44018 + chr3R 10646297 intergenic not near genes chr3R_8_10645001 chr3R_10645001 RAL-235 1869 chr3R 10723742 10723793 chr3R 10723854 10723885 16 104 5.0 0.0 2.5 4.6 143 chr3R 10723742 intergenic not near genes chr3R 10723814 intergenic not near genes chr3R 10723885 intergenic not near genes chr3R_16_10720001 chr3R_10720001 RAL-235 1870 chr3R 10727642 10727678 chr3R 10727742 10727775 8 95 2.0 6.5 4.2 1.5 133 chr3R 10727642 intergenic not near genes chr3R 10727708 intergenic not near genes chr3R 10727775 intergenic not near genes chr3R_8_10725001 chr3R_10725001 RAL-235 1871 chr3R 10732318 10732341 chr3R 10733210 10733233 8 890 4.0 5.5 4.8 1.4 915 chr3R 10732318 intergenic not near genes chr3R 10732776 intergenic not near genes chr3R 10733233 intergenic not near genes chr3R_8_10730001 chr3R_10730001 RAL-235 1872 chr3R 10745423 10745454 chr3R 10745514 10745546 5 94 2.5 4.5 3.5 1.1 123 chr3R 10745423 intron TkR86C - chr3R 10745484 intron TkR86C - chr3R 10745546 intron TkR86C - chr3R_5_10745001 chr3R_10745001 RAL-235 1873 chr3R 10804152 10804208 chr3R 10811703 10811760 17.6 11 7550 2.5 3.0 2.8 2.9 7608 chr3R 10804152 intergenic CG14692 - chr3R 10807956 intergenic not near genes chr3R 10811760 3` UTR CG14693 - chr3R_11_10805001 chr3R_10805001 RAL-235 1874 chr3R 10870845 10870897 chr3R 10870946 10870998 17 94 5.0 3.0 4.0 3.4 153 chr3R 10870845 intergenic Fdh -,Tsp86D + chr3R 10870922 3` UTR Fdh - chr3R 10870998 exon Fdh - chr3R_17_10870001 chr3R_10870001 RAL-235 1875 chr3R 10910981 10911024 chr3R 10911121 10911164 7 131 4.0 6.0 5.0 1.2 183 chr3R 10910981 intergenic not near genes chr3R 10911072 intergenic not near genes chr3R 10911164 intergenic not near genes chr3R_7_10910001 chr3R_10910001 RAL-235 1876 chr3R 10920030 10920068 chr3R 10920127 10920166 9 96 2.5 2.0 2.2 2.8 136 chr3R 10920030 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920166 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-235 1877 chr3R 10933825 10933861 chr3R 10933927 10933964 11 97 3.0 2.5 2.8 2.9 139 chr3R 10933825 intergenic not near genes chr3R 10933894 intergenic not near genes chr3R 10933964 intergenic not near genes chr3R_11_10930001 chr3R_10930001 RAL-235 1878 chr3R 10935732 10935778 chr3R 10935829 10935875 19 93 5.5 4.5 5.0 3.2 143 chr3R 10935732 intergenic not near genes chr3R 10935804 intergenic not near genes chr3R 10935875 intergenic not near genes chr3R_19_10935001 chr3R_10935001 RAL-235 1879 chr3R 10974100 10974140 chr3R 10974206 10974252 12 109 2.0 3.0 2.5 3.4 152 chr3R 10974100 intron CG34114 + chr3R 10974176 intron CG34114 + chr3R 10974252 intron CG34114 + chr3R_12_10970001 chr3R_10970001 RAL-235 1880 chr3R 10994267 10994299 chr3R 10994366 10994398 5 99 7.0 3.5 5.2 0.8 131 chr3R 10994267 intron CG34114 + chr3R 10994332 intron CG34114 + chr3R 10994398 intron CG34114 + chr3R_5_10990001 chr3R_10990001 RAL-235 1881 chr3R 11004022 11004056 chr3R 26312888 26312888 4 15308850 6.0 16.0 11.0 0.3 15308866 chr3R 11004022 intron CG34114 + chr3R 18658455 intron CG31224 - chr3R 26312888 intergenic not near genes chr3R_4_18655001 chr3R_18655001 RAL-235 1882 chr3R 11087427 11087461 chr3R 11087523 11087557 5 94 3.5 5.5 4.5 0.9 130 chr3R 11087427 intergenic not near genes chr3R 11087492 intergenic not near genes chr3R 11087557 intergenic not near genes chr3R_5_11085001 chr3R_11085001 RAL-235 1883 chr3R 11099638 11099689 chr3R 11099790 11099830 8 148 3.5 2.5 3.0 2.0 192 chr3R 11099638 intergenic not near genes chr3R 11099734 intergenic not near genes chr3R 11099830 intergenic not near genes chr3R_8_11095001 chr3R_11095001 RAL-235 1884 chr3R 11102311 11102355 chr3R 11102411 11102419 4 86 3.0 2.5 2.8 1.1 108 chr3R 11102311 intergenic not near genes chr3R 11102365 intergenic not near genes chr3R 11102419 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-235 1885 chr3R 11103149 11103172 chr3R 11103251 11103269 8 101 0.0 0.0 0.0 8.0 120 chr3R 11103149 intergenic not near genes chr3R 11103209 intergenic not near genes chr3R 11103269 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-235 1886 chr3R 11151119 11151150 chr3R 11151315 11151346 4 195 4.0 4.0 4.0 0.8 227 chr3R 11151119 3` UTR Ugt86Di - chr3R 11151232 3` UTR Ugt86Di - chr3R 11151346 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-235 1887 chr3R 11197964 11198018 chr3R 11198083 11198127 11 112 5.0 2.5 3.8 2.3 163 chr3R 11197964 intron cu + chr3R 11198046 intron cu + chr3R 11198127 intron cu + chr3R_11_11195001 chr3R_11195001 RAL-235 1888 chr3R 11263379 11263418 chr3R 11263483 11263522 6 102 4.0 3.5 3.8 1.2 143 chr3R 11263379 intergenic not near genes chr3R 11263450 intergenic not near genes chr3R 11263522 intergenic not near genes chr3R_6_11260001 chr3R_11260001 RAL-235 1889 chr3R 11379221 11379248 chr3R 11388390 11388423 roo 9 9169 8.0 3.5 5.8 1.3 9202 chr3R 11379221 intron pros + chr3R 11383822 intron pros + chr3R 11388423 intron pros + chr3R_9_11380001 chr3R_11380001 RAL-235 1890 chr3R 11485536 11485582 chr3R 11485642 11485679 4 103 3.0 2.0 2.5 1.1 143 chr3R 11485536 intergenic not near genes chr3R 11485608 intergenic not near genes chr3R 11485679 intergenic not near genes chr3R_4_11485001 chr3R_11485001 RAL-235 1891 chr3R 11494377 11494397 chr3R 11494444 11494494 6 88 1.0 4.0 2.5 1.7 117 chr3R 11494377 intergenic not near genes chr3R 11494436 intergenic not near genes chr3R 11494494 intergenic not near genes chr3R_6_11490001 chr3R_11490001 RAL-235 1892 chr3R 11549800 11549820 chr3R 11549897 11549918 10 98 7.5 6.5 7.0 1.2 118 chr3R 11549800 intergenic not near genes chr3R 11549859 intergenic not near genes chr3R 11549918 intergenic not near genes chr3R_10_11545001 chr3R_11545001 RAL-235 1893 chr3R 11664771 11664815 chr3R 11664883 11664927 19 106 3.5 4.0 3.8 4.0 156 chr3R 11664771 intron CG42327 + chr3R 11664849 intron CG42327 + chr3R 11664927 intron CG42327 + chr3R_19_11660001 chr3R_11660001 RAL-235 1894 chr3R 11694712 11694750 chr3R 11694820 11694863 11 108 5.0 3.5 4.2 2.1 151 chr3R 11694712 intergenic Fer3 - chr3R 11694788 intergenic Fer3 - chr3R 11694863 intergenic not near genes chr3R_11_11690001 chr3R_11690001 RAL-235 1895 chr3R 11708618 11708645 chr3R 11708846 11708873 8 225 4.5 1.5 3.0 2.0 255 chr3R 11708618 intergenic not near genes chr3R 11708746 intergenic not near genes chr3R 11708873 intergenic not near genes chr3R_8_11705001 chr3R_11705001 RAL-235 1896 chr3R 11708649 11708662 chr3R 11708841 11708878 4 216 2.0 1.0 1.5 1.6 229 chr3R 11708649 intergenic not near genes chr3R 11708764 intergenic not near genes chr3R 11708878 intergenic not near genes chr3R_4_11705001 chr3R_11705001 RAL-235 1897 chr3R 11713478 11713518 chr3R 11713572 11713617 11 95 3.0 2.0 2.5 3.1 139 chr3R 11713478 intergenic not near genes chr3R 11713548 intergenic not near genes chr3R 11713617 intergenic not near genes chr3R_11_11710001 chr3R_11710001 RAL-235 1898 chr3R 11811072 11811125 chr3R 11811188 11811200 10 108 3.5 6.0 4.8 1.7 128 chr3R 11811072 5` UTR ClC-a - chr3R 11811136 intron ClC-a - chr3R 11811200 intron ClC-a - chr3R_10_11810001 chr3R_11810001 RAL-235 1899 chr3R 11841049 11841100 chr3R 11846252 11846267 BS 13 5200 2.5 8.0 5.2 2.1 5218 chr3R 11841049 intron CG6959 - chr3R 11843658 intron CG6959 - chr3R 11846267 intron CG6959 - chr3R_13_11840001 chr3R_11840001 RAL-235 1900 chr3R 11957836 11957875 chr3R 11958139 11958163 S-element 9 296 4.5 0.0 2.2 2.8 327 chr3R 11957836 intergenic not near genes chr3R 11958000 intergenic not near genes chr3R 11958163 intergenic not near genes chr3R_9_11955001 chr3R_11955001 RAL-235 1901 chr3R 11998946 11998962 chr3R 11999081 11999085 8 132 4.5 7.0 5.8 1.2 139 chr3R 11998946 intron Tk - chr3R 11999016 intron Tk - chr3R 11999085 intron Tk - chr3R_8_11995001 chr3R_11995001 RAL-235 1902 chr3R 12022875 12022916 chr3R 12025067 12025102 pogo 9 2192 5.5 4.0 4.8 1.6 2227 chr3R 12022875 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025102 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-235 1903 chr3R 12045158 12045202 chr3R 12045251 12045298 12 93 2.0 6.0 4.0 2.4 140 chr3R 12045158 intergenic not near genes chr3R 12045228 intergenic not near genes chr3R 12045298 intergenic not near genes chr3R_12_12045001 chr3R_12045001 RAL-235 1904 chr3R 12081988 12082025 chr3R 12082084 12082120 9 95 3.5 2.5 3.0 2.2 132 chr3R 12081988 intron CG14741 - chr3R 12082054 intron CG14741 - chr3R 12082120 intron CG14741 - chr3R_9_12080001 chr3R_12080001 RAL-235 1905 chr3R 12102861 12102885 chr3R 12102982 12102985 4 112 3.0 2.5 2.8 1.1 124 chr3R 12102861 intron dpr17 + chr3R 12102923 intron dpr17 + chr3R 12102985 intron dpr17 + chr3R_4_12100001 chr3R_12100001 RAL-235 1906 chr3R 12113996 12114049 chr3R 12114100 12114149 8 100 4.5 5.0 4.8 1.4 153 chr3R 12113996 intergenic not near genes chr3R 12114072 intergenic not near genes chr3R 12114149 intergenic not near genes chr3R_8_12110001 chr3R_12110001 RAL-235 1907 chr3R 12267845 12267877 chr3R 12267939 12267977 6 97 5.0 5.0 5.0 1.0 132 chr3R 12267845 intron svp + chr3R 12267911 intron svp + chr3R 12267977 intron svp + chr3R_6_12265001 chr3R_12265001 RAL-235 1908 chr3R 12383851 12383856 chr3R 12383969 12383975 5 119 1.0 8.0 4.5 0.9 124 chr3R 12383851 intron GstD11 + chr3R 12383913 intron GstD11 + chr3R 12383975 intron GstD11 + chr3R_5_12380001 chr3R_12380001 RAL-235 1909 chr3R 12599373 12599406 chr3R 12599456 12599479 4 83 2.0 4.0 3.0 1.0 106 chr3R 12599373 intergenic not near genes chr3R 12599426 intergenic not near genes chr3R 12599479 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-235 1910 chr3R 12733479 12733503 chr3R 12733559 12733567 5 83 4.0 3.0 3.5 1.1 88 chr3R 12733479 intergenic not near genes chr3R 12733523 intergenic not near genes chr3R 12733567 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-235 1911 chr3R 12780292 12780300 chr3R 12780418 12780432 BS 5 127 4.0 0.0 2.0 1.7 140 chr3R 12780292 intron beat-Vc - chr3R 12780362 intron beat-Vc - chr3R 12780432 intron beat-Vc - chr3R_5_12780001 chr3R_12780001 RAL-235 1912 chr3R 12787920 12787956 chr3R 12788023 12788054 13 100 6.0 3.5 4.8 2.2 134 chr3R 12787920 intergenic not near genes chr3R 12787987 intergenic not near genes chr3R 12788054 intergenic not near genes chr3R_13_12785001 chr3R_12785001 RAL-235 1913 chr3R 12876933 12876981 chr3R 12877035 12877073 11 100 5.0 3.5 4.2 2.1 140 chr3R 12876933 intergenic not near genes chr3R 12877003 intergenic not near genes chr3R 12877073 intergenic not near genes chr3R_11_12875001 chr3R_12875001 RAL-235 1914 chr3R 12894585 12894609 chr3R 12894715 12894727 4 125 0.5 0.0 0.2 3.3 142 chr3R 12894585 intergenic not near genes chr3R 12894656 intergenic not near genes chr3R 12894727 intergenic not near genes chr3R_4_12890001 chr3R_12890001 RAL-235 1915 chr3R 12920159 12920176 chr3R 12925372 12925399 copia 4 5213 3.0 4.5 3.8 0.8 5240 chr3R 12920159 intron beat-Vb + chr3R 12922779 intron beat-Vb + chr3R 12925399 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-235 1916 chr3R 13059944 13059972 chr3R 13060159 13060172 4 211 2.5 4.0 3.2 1.0 228 chr3R 13059944 intron sim + chr3R 13060058 intron sim + chr3R 13060172 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-235 1917 chr3R 13061858 13061899 chr3R 13061973 13062014 12 113 4.0 1.5 2.8 3.2 156 chr3R 13061858 intron sim + chr3R 13061936 intron sim + chr3R 13062014 intron sim + chr3R_12_13060001 chr3R_13060001 RAL-235 1918 chr3R 13066984 13067134 chr3R 13067091 13067230 15 100 0.0 0.0 0.0 15.0 246 chr3R 13066984 intron sim + chr3R 13067107 intron sim + chr3R 13067230 intron sim + chr3R_15_13065001 chr3R_13065001 RAL-235 1919 chr3R 13075360 13075387 chr3R 13075444 13075488 11 99 4.0 5.0 4.5 2.0 128 chr3R 13075360 intron sim + chr3R 13075424 intron sim + chr3R 13075488 intron sim + chr3R_11_13075001 chr3R_13075001 RAL-235 1920 chr3R 13114380 13114425 chr3R 13114492 13114539 7 110 2.0 4.0 3.0 1.8 159 chr3R 13114380 intron timeout + chr3R 13114460 intron timeout + chr3R 13114539 intron timeout + chr3R_7_13110001 chr3R_13110001 RAL-235 1921 chr3R 13135819 13135832 chr3R 13138004 13138017 pogo 5 2182 6.0 3.0 4.5 0.9 2198 chr3R 13135819 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136918 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138017 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-235 1922 chr3R 13143041 13143065 chr3R 13148625 13148661 mdg3 9 5582 3.0 5.0 4.0 1.8 5620 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145851 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148661 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13145001 chr3R_13145001 RAL-235 1923 chr3R 13171907 13171936 chr3R 13172803 13172843 19 898 32.5 40.0 36.2 0.5 936 chr3R 13171907 intergenic not near genes chr3R 13172375 intergenic not near genes chr3R 13172843 intergenic not near genes chr3R_19_13170001 chr3R_13170001 RAL-235 1924 chr3R 13173435 13173476 chr3R 13173525 13173550 8 88 2.5 0.5 1.5 3.2 115 chr3R 13173435 intergenic not near genes chr3R 13173492 intergenic not near genes chr3R 13173550 intergenic not near genes chr3R_8_13170001 chr3R_13170001 RAL-235 1925 chr3R 13195944 13195982 chr3R 13196046 13196062 8 102 1.5 0.5 1.0 4.0 118 chr3R 13195944 intergenic not near genes chr3R 13196003 intergenic not near genes chr3R 13196062 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-235 1926 chr3R 13338862 13338910 chr3R 13339238 13339286 9 374 0.5 3.5 2.0 3.0 424 chr3R 13338862 intron PK2-R1 + chr3R 13339074 intron PK2-R1 + chr3R 13339286 intron PK2-R1 + chr3R_9_13335001 chr3R_13335001 RAL-235 1927 chr3R 13359549 13359564 chr3R 13359655 13359673 5 107 4.0 4.0 4.0 1.0 124 chr3R 13359549 intergenic not near genes chr3R 13359611 intergenic not near genes chr3R 13359673 intergenic not near genes chr3R_5_13355001 chr3R_13355001 RAL-235 1928 chr3R 13514013 13514025 chr3R 13514114 13514126 4 101 11.0 3.5 7.2 0.5 113 chr3R 13514013 intergenic not near genes chr3R 13514070 intergenic not near genes chr3R 13514126 intergenic not near genes chr3R_4_13510001 chr3R_13510001 RAL-235 1929 chr3R 13517224 13517236 chr3R 13520053 13520065 jockey 6 2832 3.5 3.5 3.5 1.3 2841 chr3R 13517224 intergenic not near genes chr3R 13518644 intergenic not near genes chr3R 13520065 intergenic not near genes chr3R_6_13515001 chr3R_13515001 RAL-235 1930 chr3R 13526671 13526705 chr3R 13526770 13526793 18 96 5.0 4.5 4.8 3.1 122 chr3R 13526671 intergenic not near genes chr3R 13526732 intergenic not near genes chr3R 13526793 intergenic not near genes chr3R_18_13525001 chr3R_13525001 RAL-235 1931 chr3R 13552878 13552904 chr3R 13552979 13553006 4 94 1.0 4.0 2.5 1.1 128 chr3R 13552878 intergenic not near genes chr3R 13552942 intergenic not near genes chr3R 13553006 intergenic not near genes chr3R_4_13550001 chr3R_13550001 RAL-235 1932 chr3R 13554138 13554171 chr3R 13554227 13554233 4 86 3.5 3.0 3.2 1.0 95 chr3R 13554138 intergenic not near genes chr3R 13554186 intergenic not near genes chr3R 13554233 intergenic not near genes chr3R_4_13550001 chr3R_13550001 RAL-235 1933 chr3R 13555665 13555695 chr3R 13555763 13555783 10 96 4.5 0.0 2.2 3.1 118 chr3R 13555665 intergenic not near genes chr3R 13555724 intergenic not near genes chr3R 13555783 intergenic not near genes chr3R_10_13555001 chr3R_13555001 RAL-235 1934 chr3R 13602180 13602192 chr3R 13602277 13602289 4 97 5.5 2.0 3.8 0.8 109 chr3R 13602180 intergenic not near genes chr3R 13602234 intergenic not near genes chr3R 13602289 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-235 1935 chr3R 13603034 13603074 chr3R 13603145 13603182 10 108 2.0 3.5 2.8 2.6 148 chr3R 13603034 intergenic not near genes chr3R 13603108 intergenic not near genes chr3R 13603182 intergenic not near genes chr3R_10_13600001 chr3R_13600001 RAL-235 1936 chr3R 13606696 13606734 chr3R 13606850 13606900 15 165 1.0 5.0 3.0 3.8 204 chr3R 13606696 intergenic CG9759 - chr3R 13606798 intergenic CG9759 - chr3R 13606900 intergenic CG9759 - chr3R_15_13605001 chr3R_13605001 RAL-235 1937 chr3R 13625673 13625720 chr3R 13625774 13625819 9 99 4.0 2.5 3.2 2.1 146 chr3R 13625673 intergenic not near genes chr3R 13625746 intergenic not near genes chr3R 13625819 intergenic not near genes chr3R_9_13625001 chr3R_13625001 RAL-235 1938 chr3R 13659716 13659836 chr3R 13659830 13659945 4 107 0.0 0.0 0.0 4.0 229 chr3R 13659716 intron Hrb87F - chr3R 13659830 intron Hrb87F - chr3R 13659945 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-235 1939 chr3R 13850295 13850339 chr3R 13850409 13850447 8 107 0.0 3.0 1.5 3.2 152 chr3R 13850295 intergenic not near genes chr3R 13850371 intergenic not near genes chr3R 13850447 intergenic not near genes chr3R_8_13850001 chr3R_13850001 RAL-235 1940 chr3R 13863680 13863706 chr3R 13863768 13863791 6 97 5.0 3.0 4.0 1.2 111 chr3R 13863680 intergenic not near genes chr3R 13863736 intergenic not near genes chr3R 13863791 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-235 1941 chr3R 14021627 14021661 chr3R 14023472 14023506 S-element 15 1842 5.5 3.5 4.5 2.7 1879 chr3R 14021627 intron rdx - chr3R 14022566 intron rdx - chr3R 14023506 intron rdx - chr3R_15_14020001 chr3R_14020001 RAL-235 1942 chr3R 14058103 14058147 chr3R 14058243 14058279 18 139 3.0 4.0 3.5 4.0 176 chr3R 14058103 5` UTR foxo + chr3R 14058191 intron foxo + chr3R 14058279 intron foxo + chr3R_18_14055001 chr3R_14055001 RAL-235 1943 chr3R 14067127 14067149 chr3R 14067225 14067241 9 96 5.0 2.0 3.5 2.0 114 chr3R 14067127 exon foxo + chr3R 14067184 intron foxo + chr3R 14067241 intron foxo + chr3R_9_14065001 chr3R_14065001 RAL-235 1944 chr3R 14083393 14083433 chr3R 14083514 14083526 8 118 7.0 0.5 3.8 1.7 133 chr3R 14083393 intron foxo + chr3R 14083460 intron foxo + chr3R 14083526 intron foxo + chr3R_8_14080001 chr3R_14080001 RAL-235 1945 chr3R 14117422 14117467 chr3R 14117513 14117563 26 94 5.5 8.5 7.0 3.2 141 chr3R 14117422 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117563 intron Kif19A - chr3R_26_14115001 chr3R_14115001 RAL-235 1946 chr3R 14167763 14167797 chr3R 14167854 14167888 6 85 2.0 2.0 2.0 2.0 125 chr3R 14167763 3` UTR Dop1R1 - chr3R 14167826 3` UTR Dop1R1 - chr3R 14167888 3` UTR Dop1R1 - chr3R_6_14165001 chr3R_14165001 RAL-235 1947 chr3R 14170138 14170176 chr3R 14170248 14170286 11 108 4.0 4.0 4.0 2.2 148 chr3R 14170138 3` UTR Dop1R1 - chr3R 14170212 3` UTR Dop1R1 - chr3R 14170286 3` UTR Dop1R1 - chr3R_11_14170001 chr3R_14170001 RAL-235 1948 chr3R 14180806 14180836 chr3R 14185576 14185620 F-element 11 4779 6.5 8.0 7.2 1.3 4814 chr3R 14180806 intron Dop1R1 - chr3R 14183213 intron Dop1R1 - chr3R 14185620 intron Dop1R1 - chr3R_11_14180001 chr3R_14180001 RAL-235 1949 chr3R 14194433 14194461 chr3R 14203578 14203627 roo 11 9157 5.5 6.5 6.0 1.6 9194 chr3R 14194433 intron Dop1R1 - chr3R 14199030 intron Dop1R1 - chr3R 14203627 intron Dop1R1 - chr3R_11_14195001 chr3R_14195001 RAL-235 1950 chr3R 14327670 14327723 chr3R 14327772 14327821 24 98 3.5 2.5 3.0 6.0 151 chr3R 14327670 3` UTR CG3321 + chr3R 14327746 intergenic CG3321 +,spn-B + chr3R 14327821 intergenic CG3321 +,spn-B + chr3R_24_14325001 chr3R_14325001 RAL-235 1951 chr3R 14466980 14467010 chr3R 14467067 14467087 7 87 3.5 2.0 2.8 1.8 107 chr3R 14466980 intron cv-c - chr3R 14467034 intron cv-c - chr3R 14467087 intron cv-c - chr3R_7_14465001 chr3R_14465001 RAL-235 1952 chr3R 14546051 14546059 chr3R 14546148 14546156 7 97 6.0 5.5 5.8 1.0 105 chr3R 14546051 intron Pde6 - chr3R 14546104 intron Pde6 - chr3R 14546156 intron Pde6 - chr3R_7_14545001 chr3R_14545001 RAL-235 1953 chr3R 14546061 14546072 chr3R 14546146 14546168 5 88 4.0 5.0 4.5 0.9 107 chr3R 14546061 intron Pde6 - chr3R 14546114 intron Pde6 - chr3R 14546168 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-235 1954 chr3R 14547563 14547590 chr3R 14547853 14547886 13 293 0.5 4.5 2.5 3.7 323 chr3R 14547563 intron Pde6 - chr3R 14547724 intron Pde6 - chr3R 14547886 intron Pde6 - chr3R_13_14545001 chr3R_14545001 RAL-235 1955 chr3R 14608453 14608476 chr3R 14608562 14608587 7 111 1.5 4.0 2.8 1.8 134 chr3R 14608453 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608587 intergenic not near genes chr3R_7_14605001 chr3R_14605001 RAL-235 1956 chr3R 14773468 14773494 chr3R 14773564 14773572 9 93 6.0 2.5 4.2 1.7 104 chr3R 14773468 intron jvl + chr3R 14773520 intron jvl + chr3R 14773572 intron jvl + chr3R_9_14770001 chr3R_14770001 RAL-235 1957 chr3R 14787126 14787132 chr3R 14787547 14787561 4 428 6.0 4.0 5.0 0.7 435 chr3R 14787126 intron jvl + chr3R 14787344 intron jvl + chr3R 14787561 intron jvl + chr3R_4_14785001 chr3R_14785001 RAL-235 1958 chr3R 14787135 14787139 chr3R 14787546 14787569 6 425 5.5 4.0 4.8 1.0 434 chr3R 14787135 intron jvl + chr3R 14787352 intron jvl + chr3R 14787569 intron jvl + chr3R_6_14785001 chr3R_14785001 RAL-235 1959 chr3R 14821595 14821647 chr3R 14821764 14821816 20 167 3.0 5.5 4.2 3.8 221 chr3R 14821595 intron btsz - chr3R 14821706 intron btsz - chr3R 14821816 intron btsz - chr3R_20_14820001 chr3R_14820001 RAL-235 1960 chr3R 14879032 14879073 chr3R 14879129 14879177 8 98 1.5 1.5 1.5 3.2 145 chr3R 14879032 intergenic CG3631 + chr3R 14879104 intergenic CG3631 + chr3R 14879177 intergenic CG3631 + chr3R_8_14875001 chr3R_14875001 RAL-235 1961 chr3R 14882804 14882838 chr3R 14882888 14882900 10 91 3.0 3.5 3.2 2.4 96 chr3R 14882804 exon Rrp6 - chr3R 14882852 intron Rrp6 - chr3R 14882900 exon Rrp6 - chr3R_10_14880001 chr3R_14880001 RAL-235 1962 chr3R 15026312 15026339 chr3R 15026418 15026435 5 104 2.5 4.5 3.5 1.1 123 chr3R 15026312 intergenic not near genes chr3R 15026374 intergenic not near genes chr3R 15026435 intergenic not near genes chr3R_5_15025001 chr3R_15025001 RAL-235 1963 chr3R 15036263 15036273 chr3R 15036443 15036453 4 180 12.5 4.0 8.2 0.4 190 chr3R 15036263 intergenic not near genes chr3R 15036358 intergenic not near genes chr3R 15036453 intergenic not near genes chr3R_4_15035001 chr3R_15035001 RAL-235 1964 chr3R 15036276 15036309 chr3R 15036441 15036469 9 167 4.5 3.5 4.0 1.8 193 chr3R 15036276 intergenic not near genes chr3R 15036372 intergenic not near genes chr3R 15036469 intergenic not near genes chr3R_9_15035001 chr3R_15035001 RAL-235 1965 chr3R 15041403 15041418 chr3R 15045207 15045222 Doc 4 3802 0.0 4.0 2.0 1.3 3819 chr3R 15041403 intergenic not near genes chr3R 15043312 intergenic not near genes chr3R 15045222 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-235 1966 chr3R 15048198 15048215 chr3R 15048286 15048323 10 101 2.5 7.5 5.0 1.7 125 chr3R 15048198 intergenic not near genes chr3R 15048260 intergenic not near genes chr3R 15048323 intergenic not near genes chr3R_10_15045001 chr3R_15045001 RAL-235 1967 chr3R 15079786 15079830 chr3R 15080047 15080091 pogo 17 257 3.0 1.5 2.2 5.3 305 chr3R 15079786 3` UTR CG6966 - chr3R 15079938 3` UTR CG6966 - chr3R 15080091 3` UTR CG6966 - chr3R_17_15075001 chr3R_15075001 RAL-235 1968 chr3R 15084133 15084147 chr3R 15084285 15084299 6 149 5.0 2.5 3.8 1.2 166 chr3R 15084133 intron CG6966 - chr3R 15084216 intron CG6966 - chr3R 15084299 intron CG6966 - chr3R_6_15080001 chr3R_15080001 RAL-235 1969 chr3R 15102479 15102529 chr3R 15109756 15109786 412 19 7274 6.0 4.0 5.0 3.2 7307 chr3R 15102479 intron CG42788 - chr3R 15106132 intron CG42788 - chr3R 15109786 intron CG42788 - chr3R_19_15105001 chr3R_15105001 RAL-235 1970 chr3R 15127762 15127810 chr3R 15127862 15127910 25 97 3.0 4.0 3.5 5.6 148 chr3R 15127762 intron CG42788 - chr3R 15127836 intron CG42788 - chr3R 15127910 intron CG42788 - chr3R_25_15125001 chr3R_15125001 RAL-235 1971 chr3R 15132041 15132048 chr3R 15135121 15135128 Juan 6 3080 10.5 6.0 8.2 0.7 3087 chr3R 15132041 intergenic CG42788 - chr3R 15133584 intergenic not near genes chr3R 15135128 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-235 1972 chr3R 15162523 15162548 chr3R 15167311 15167336 F-element 8 4788 9.0 2.5 5.8 1.2 4813 chr3R 15162523 intron Gyc88E + chr3R 15164930 intron Gyc88E + chr3R 15167336 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-235 1973 chr3R 15286250 15286297 chr3R 15286347 15286388 10 92 2.0 9.5 5.8 1.5 138 chr3R 15286250 intron Tm1 + chr3R 15286319 intron Tm1 + chr3R 15286388 intron Tm1 + chr3R_10_15285001 chr3R_15285001 RAL-235 1974 chr3R 15406131 15406170 chr3R 15406230 15406271 12 99 5.0 1.0 3.0 3.0 140 chr3R 15406131 intron CG6125 - chr3R 15406201 intron CG6125 - chr3R 15406271 intron CG6125 - chr3R_12_15405001 chr3R_15405001 RAL-235 1975 chr3R 15594655 15594673 chr3R 15594758 15594763 8 99 0.0 8.0 4.0 1.6 108 chr3R 15594655 intergenic not near genes chr3R 15594709 intergenic not near genes chr3R 15594763 intergenic not near genes chr3R_8_15590001 chr3R_15590001 RAL-235 1976 chr3R 15601153 15601192 chr3R 15608690 15608733 412 9 7536 4.5 5.5 5.0 1.5 7580 chr3R 15601153 intergenic not near genes chr3R 15604943 intergenic not near genes chr3R 15608733 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-235 1977 chr3R 15635190 15635203 chr3R 15635330 15635344 5 141 5.0 6.5 5.8 0.7 154 chr3R 15635190 intergenic CG43335 + chr3R 15635267 intergenic CG43335 + chr3R 15635344 intergenic CG43335 + chr3R_5_15635001 chr3R_15635001 RAL-235 1978 chr3R 15646771 15646800 chr3R 15646874 15646899 11 102 3.5 8.5 6.0 1.6 128 chr3R 15646771 intergenic not near genes chr3R 15646835 intergenic not near genes chr3R 15646899 intergenic not near genes chr3R_11_15645001 chr3R_15645001 RAL-235 1979 chr3R 15692505 15692550 chr3R 15692596 15692635 18 94 5.5 5.5 5.5 2.8 130 chr3R 15692505 intergenic not near genes chr3R 15692570 intergenic not near genes chr3R 15692635 intergenic CG31446 + chr3R_18_15690001 chr3R_15690001 RAL-235 1980 chr3R 15722660 15722700 chr3R 15722756 15722801 10 100 3.5 3.0 3.2 2.4 141 chr3R 15722660 intergenic not near genes chr3R 15722730 intergenic not near genes chr3R 15722801 intergenic not near genes chr3R_10_15720001 chr3R_15720001 RAL-235 1981 chr3R 15734175 15734195 chr3R 15734260 15734266 7 99 5.0 6.0 5.5 1.1 91 chr3R 15734175 intergenic not near genes chr3R 15734220 intergenic not near genes chr3R 15734266 intergenic not near genes chr3R_7_15730001 chr3R_15730001 RAL-235 1982 chr3R 15735224 15735236 chr3R 15739963 15739976 F-element 5 4740 4.0 4.5 4.2 1.0 4752 chr3R 15735224 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739976 intergenic not near genes chr3R_5_15735001 chr3R_15735001 RAL-235 1983 chr3R 16013110 16013159 chr3R 16013218 16013257 9 105 6.0 3.5 4.8 1.6 147 chr3R 16013110 intron GATAe + chr3R 16013184 intron GATAe + chr3R 16013257 intron GATAe + chr3R_9_16010001 chr3R_16010001 RAL-235 1984 chr3R 16033391 16033442 chr3R 16033492 16033543 23 100 4.5 4.5 4.5 4.2 152 chr3R 16033391 intron pnr + chr3R 16033467 intron pnr + chr3R 16033543 intron pnr + chr3R_23_16030001 chr3R_16030001 RAL-235 1985 chr3R 16189390 16189435 chr3R 16189811 16189811 invader4 13 415 5.0 7.0 6.0 1.9 421 chr3R 16189390 intron sra + chr3R 16189600 intron sra + chr3R 16189811 intron sra + chr3R_13_16185001 chr3R_16185001 RAL-235 1986 chr3R 16210821 16210845 chr3R 16210927 16210951 8 103 6.0 4.5 5.2 1.3 130 chr3R 16210821 intergenic not near genes chr3R 16210886 intergenic not near genes chr3R 16210951 intergenic not near genes chr3R_8_16210001 chr3R_16210001 RAL-235 1987 chr3R 16252201 16252253 chr3R 16252305 16252330 15 92 4.0 2.0 3.0 3.8 129 chr3R 16252201 intron tara + chr3R 16252266 intron tara + chr3R 16252330 intron tara + chr3R_15_16250001 chr3R_16250001 RAL-235 1988 chr3R 16253517 16253568 chr3R 16253623 16253672 4 105 0.0 4.5 2.2 1.2 155 chr3R 16253517 intron tara + chr3R 16253594 intron tara + chr3R 16253672 intron tara + chr3R_4_16250001 chr3R_16250001 RAL-235 1989 chr3R 16374278 16374325 chr3R 16374411 16374462 9 132 6.0 3.0 4.5 1.6 184 chr3R 16374278 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374462 3` UTR ss - chr3R_9_16370001 chr3R_16370001 RAL-235 1990 chr3R 16404636 16404682 chr3R 16404842 16404878 8 204 5.0 6.0 5.5 1.2 242 chr3R 16404636 intergenic not near genes chr3R 16404757 intergenic not near genes chr3R 16404878 intergenic not near genes chr3R_8_16400001 chr3R_16400001 RAL-235 1991 chr3R 16472574 16472592 chr3R 16472657 16472661 5 80 9.5 6.0 7.8 0.6 87 chr3R 16472574 intergenic Gyc-89Da + chr3R 16472618 5` UTR Gyc-89Da + chr3R 16472661 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-235 1992 chr3R 16756310 16756352 chr3R 16762511 16762532 diver 4 6199 4.5 1.5 3.0 1.0 6222 chr3R 16756310 intron bxd - chr3R 16759421 intron bxd - chr3R 16762532 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-235 1993 chr3R 16849707 16849744 chr3R 16849823 16849852 5 109 0.0 2.5 1.2 2.3 145 chr3R 16849707 intron iab-8 - chr3R 16849780 intron iab-8 - chr3R 16849852 intron iab-8 - chr3R_5_16845001 chr3R_16845001 RAL-235 1994 chr3R 16921822 16921850 chr3R 16921911 16921954 12 101 1.0 4.5 2.8 3.2 132 chr3R 16921822 intron iab-8 - chr3R 16921888 intron iab-8 - chr3R 16921954 intron iab-8 - chr3R_12_16920001 chr3R_16920001 RAL-235 1995 chr3R 17129160 17129176 chr3R 17129262 17129278 6 102 3.5 0.0 1.8 2.1 118 chr3R 17129160 intergenic CG31265 +,CG17475 - chr3R 17129219 intergenic CG31265 +,CG17475 - chr3R 17129278 intergenic CG17475 -,CG31265 + chr3R_6_17125001 chr3R_17125001 RAL-235 1996 chr3R 17184717 17184753 chr3R 17184813 17184849 18 93 4.5 4.5 4.5 3.3 132 chr3R 17184717 intron Mur89F - chr3R 17184783 intron Mur89F - chr3R 17184849 intron Mur89F - chr3R_18_17180001 chr3R_17180001 RAL-235 1997 chr3R 17209697 17209736 chr3R 17209792 17209803 6 93 6.0 7.0 6.5 0.8 106 chr3R 17209697 intergenic not near genes chr3R 17209750 intergenic not near genes chr3R 17209803 intergenic not near genes chr3R_6_17205001 chr3R_17205001 RAL-235 1998 chr3R 17214003 17214052 chr3R 17214098 17214125 13 88 0.5 2.0 1.2 5.9 122 chr3R 17214003 intergenic not near genes chr3R 17214064 intergenic not near genes chr3R 17214125 intergenic not near genes chr3R_13_17210001 chr3R_17210001 RAL-235 1999 chr3R 17272855 17272867 chr3R 17272985 17272998 6 143 5.0 2.5 3.8 1.2 143 chr3R 17272855 intergenic not near genes chr3R 17272926 intergenic not near genes chr3R 17272998 intergenic not near genes chr3R_6_17270001 chr3R_17270001 RAL-235 2000 chr3R 17290423 17290455 chr3R 17290529 17290561 9 103 3.5 4.0 3.8 1.9 138 chr3R 17290423 intergenic not near genes chr3R 17290492 intergenic not near genes chr3R 17290561 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-235 2001 chr3R 17294653 17294703 chr3R 17295101 17295152 BS 4 446 1.5 0.0 0.8 2.2 499 chr3R 17294653 intergenic not near genes chr3R 17294902 intergenic not near genes chr3R 17295152 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-235 2002 chr3R 17346678 17346706 chr3R 17348259 17348289 F-element 11 1581 5.5 6.5 6.0 1.6 1611 chr3R 17346678 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348289 intron beat-IIa - chr3R_11_17345001 chr3R_17345001 RAL-235 2003 chr3R 17346709 17346718 chr3R 17348257 17348275 F-element 6 1573 4.0 6.5 5.2 1.0 1566 chr3R 17346709 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348275 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-235 2004 chr3R 17419383 17419388 chr3R 17419487 17419492 4 104 1.0 0.0 0.5 2.7 109 chr3R 17419383 intergenic CG42834 + chr3R 17419438 intergenic CG42834 + chr3R 17419492 intergenic CG42834 + chr3R_4_17415001 chr3R_17415001 RAL-235 2005 chr3R 17439435 17439466 chr3R 17439770 17439801 8 332 2.5 0.0 1.2 3.6 366 chr3R 17439435 intron,intron CG5873 +,CG14331 - chr3R 17439618 intron,intron CG5873 +,CG14331 - chr3R 17439801 intron,intron CG5873 +,CG14331 - chr3R_8_17435001 chr3R_17435001 RAL-235 2006 chr3R 17461178 17461229 chr3R 17461280 17461321 15 99 1.5 4.0 2.8 3.9 143 chr3R 17461178 intergenic not near genes chr3R 17461250 intergenic not near genes chr3R 17461321 intergenic not near genes chr3R_15_17460001 chr3R_17460001 RAL-235 2007 chr3R 17463139 17463178 chr3R 17463238 17463283 6 98 2.0 8.0 5.0 1.0 144 chr3R 17463139 intergenic not near genes chr3R 17463211 intergenic not near genes chr3R 17463283 intergenic not near genes chr3R_6_17460001 chr3R_17460001 RAL-235 2008 chr3R 17497927 17497993 chr3R 17498053 17498098 8 117 0.0 5.0 2.5 2.3 171 chr3R 17497927 intron Dscam3 - chr3R 17498012 intron Dscam3 - chr3R 17498098 intron Dscam3 - chr3R_8_17495001 chr3R_17495001 RAL-235 2009 chr3R 17498725 17498731 chr3R 17498850 17498856 4 124 3.5 8.5 6.0 0.6 131 chr3R 17498725 intron Dscam3 - chr3R 17498790 intron Dscam3 - chr3R 17498856 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-235 2010 chr3R 17506368 17506393 chr3R 17506466 17506491 15 97 3.0 3.0 3.0 3.8 123 chr3R 17506368 intergenic not near genes chr3R 17506430 intergenic not near genes chr3R 17506491 intergenic not near genes chr3R_15_17505001 chr3R_17505001 RAL-235 2011 chr3R 17521576 17521585 chr3R 17521723 17521760 4 164 1.5 4.0 2.8 1.1 184 chr3R 17521576 intergenic not near genes chr3R 17521668 intergenic not near genes chr3R 17521760 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-235 2012 chr3R 17522199 17522226 chr3R 17522306 17522317 9 105 8.0 0.5 4.2 1.7 118 chr3R 17522199 intergenic not near genes chr3R 17522258 intergenic not near genes chr3R 17522317 intergenic not near genes chr3R_9_17520001 chr3R_17520001 RAL-235 2013 chr3R 17565590 17565625 chr3R 17565699 17565713 5 95 1.5 5.0 3.2 1.2 123 chr3R 17565590 intron Hmx + chr3R 17565652 intron Hmx + chr3R 17565713 intron Hmx + chr3R_5_17565001 chr3R_17565001 RAL-235 2014 chr3R 17624953 17624967 chr3R 17625049 17625063 8 95 6.0 4.0 5.0 1.3 110 chr3R 17624953 intergenic AttD + chr3R 17625008 intergenic AttD + chr3R 17625063 intergenic AttD + chr3R_8_17625001 chr3R_17625001 RAL-235 2015 chr3R 17647223 17647270 chr3R 17647340 17647387 9 111 2.0 4.0 3.0 2.2 164 chr3R 17647223 intergenic CG14322 + chr3R 17647305 intergenic CG14322 + chr3R 17647387 intergenic CG14322 + chr3R_9_17645001 chr3R_17645001 RAL-235 2016 chr3R 17663371 17663388 chr3R 17663457 17663494 6 91 2.5 7.5 5.0 1.0 123 chr3R 17663371 exon CG14322 + chr3R 17663432 exon CG14322 + chr3R 17663494 exon CG14322 + chr3R_6_17660001 chr3R_17660001 RAL-235 2017 chr3R 17663389 17663398 chr3R 17663454 17663504 5 87 1.5 7.0 4.2 1.0 115 chr3R 17663389 exon CG14322 + chr3R 17663446 exon CG14322 + chr3R 17663504 exon CG14322 + chr3R_5_17660001 chr3R_17660001 RAL-235 2018 chr3R 17702543 17702582 chr3R 17702677 17702708 9 131 2.5 5.5 4.0 1.8 165 chr3R 17702543 intron osa - chr3R 17702626 intron osa - chr3R 17702708 intron osa - chr3R_9_17700001 chr3R_17700001 RAL-235 2019 chr3R 17714167 17714212 chr3R 17714343 17714388 13 175 3.0 2.0 2.5 3.7 221 chr3R 17714167 intron osa - chr3R 17714278 intron osa - chr3R 17714388 intron osa - chr3R_13_17710001 chr3R_17710001 RAL-235 2020 chr3R 17725052 17725074 chr3R 17725166 17725188 5 114 3.0 0.0 1.5 2.0 136 chr3R 17725052 intergenic Atg8b - chr3R 17725120 intergenic Atg8b - chr3R 17725188 intergenic Atg8b - chr3R_5_17725001 chr3R_17725001 RAL-235 2021 chr3R 17811189 17811208 chr3R 17811289 17811292 4 96 1.0 0.0 0.5 2.7 103 chr3R 17811189 intergenic CG18012 -,tinc + chr3R 17811240 intergenic CG18012 -,tinc + chr3R 17811292 intergenic CG18012 -,tinc + chr3R_4_17810001 chr3R_17810001 RAL-235 2022 chr3R 17823179 17823233 chr3R 17823276 17823295 26 92 4.5 5.0 4.8 4.5 116 chr3R 17823179 intron tinc + chr3R 17823237 intron tinc + chr3R 17823295 intron tinc + chr3R_26_17820001 chr3R_17820001 RAL-235 2023 chr3R 17899069 17899094 chr3R 17899167 17899182 9 97 10.0 5.0 7.5 1.1 113 chr3R 17899069 intron Rim - chr3R 17899126 intron Rim - chr3R 17899182 intron Rim - chr3R_9_17895001 chr3R_17895001 RAL-235 2024 chr3R 17925852 17925885 chr3R 17927317 17927339 hobo 6 1468 2.5 3.0 2.8 1.6 1487 chr3R 17925852 intron cpo + chr3R 17926596 intron cpo + chr3R 17927339 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-235 2025 chr3R 17989330 17989367 chr3R 17989426 17989463 12 95 1.0 6.5 3.8 2.5 133 chr3R 17989330 intron cpo + chr3R 17989396 intron cpo + chr3R 17989463 intron cpo + chr3R_12_17985001 chr3R_17985001 RAL-235 2026 chr3R 18041739 18041771 chr3R 18041830 18041838 10 89 0.0 0.0 0.0 10.0 99 chr3R 18041739 intergenic not near genes chr3R 18041788 intergenic not near genes chr3R 18041838 intergenic not near genes chr3R_10_18040001 chr3R_18040001 RAL-235 2027 chr3R 18061434 18061460 chr3R 18061535 18061572 10 107 3.5 0.5 2.0 3.3 138 chr3R 18061434 intergenic not near genes chr3R 18061503 intergenic not near genes chr3R 18061572 intergenic not near genes chr3R_10_18060001 chr3R_18060001 RAL-235 2028 chr3R 18142509 18142526 chr3R 18142622 18142638 10 110 8.0 3.0 5.5 1.5 129 chr3R 18142509 intergenic not near genes chr3R 18142574 intergenic not near genes chr3R 18142638 intergenic not near genes chr3R_10_18140001 chr3R_18140001 RAL-235 2029 chr3R 18142533 18142556 chr3R 18142620 18142668 7 106 3.0 3.0 3.0 1.8 135 chr3R 18142533 intergenic not near genes chr3R 18142600 intergenic not near genes chr3R 18142668 intergenic not near genes chr3R_7_18140001 chr3R_18140001 RAL-235 2030 chr3R 18143475 18143489 chr3R 18143581 18143590 4 104 6.0 4.0 5.0 0.7 115 chr3R 18143475 intergenic not near genes chr3R 18143532 intergenic not near genes chr3R 18143590 intergenic not near genes chr3R_4_18140001 chr3R_18140001 RAL-235 2031 chr3R 18157617 18157623 chr3R 18157724 18157751 4 122 0.0 6.5 3.2 1.0 134 chr3R 18157617 intergenic CR45103 + chr3R 18157684 intergenic CR45103 + chr3R 18157751 5` UTR CR45103 + chr3R_4_18155001 chr3R_18155001 RAL-235 2032 chr3R 18321939 18321959 chr3R 18322080 18322119 10 155 2.5 4.0 3.2 2.4 180 chr3R 18321939 intron CG31235 - chr3R 18322029 intron CG31235 - chr3R 18322119 intron CG31235 - chr3R_10_18320001 chr3R_18320001 RAL-235 2033 chr3R 18331761 18331784 chr3R 18333275 18333277 hopper2 5 1508 11.5 3.5 7.5 0.6 1516 chr3R 18331761 3` UTR CG15803 - chr3R 18332519 intron CG15803 - chr3R 18333277 3` UTR CG15803 - chr3R_5_18330001 chr3R_18330001 RAL-235 2034 chr3R 18379625 18379656 chr3R 18379939 18379982 11 324 2.0 3.5 2.8 2.9 357 chr3R 18379625 intron CG7675 - chr3R 18379804 intron CG7675 - chr3R 18379982 intron CG7675 - chr3R_11_18375001 chr3R_18375001 RAL-235 2035 chr3R 18464327 18464339 chr3R 18464477 18464493 4 153 0.0 6.5 3.2 1.0 166 chr3R 18464327 intron fru - chr3R 18464410 intron fru - chr3R 18464493 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-235 2036 chr3R 18472269 18472292 chr3R 18472390 18472413 5 119 5.0 4.0 4.5 0.9 144 chr3R 18472269 intron fru - chr3R 18472341 intron fru - chr3R 18472413 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-235 2037 chr3R 18473226 18473251 chr3R 18473333 18473342 5 103 0.0 0.0 0.0 5.0 116 chr3R 18473226 intron fru - chr3R 18473284 intron fru - chr3R 18473342 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-235 2038 chr3R 18500719 18500739 chr3R 18500859 18500880 9 139 1.0 6.0 3.5 2.0 161 chr3R 18500719 intron fru - chr3R 18500800 intron fru - chr3R 18500880 intron fru - chr3R_9_18500001 chr3R_18500001 RAL-235 2039 chr3R 18606482 18606532 chr3R 18610735 18610784 F-element 15 4250 4.0 8.5 6.2 2.1 4302 chr3R 18606482 intron,intron qin +,CG14304 - chr3R 18608633 intron,intron qin +,CG14304 - chr3R 18610784 intron,intron qin +,CG14304 - chr3R_15_18605001 chr3R_18605001 RAL-235 2040 chr3R 18617691 18617743 chr3R 18617791 18617843 18 100 1.5 4.5 3.0 4.5 152 chr3R 18617691 intron,intron qin +,CG14304 - chr3R 18617767 intron,intron qin +,CG14304 - chr3R 18617843 intron,intron qin +,CG14304 - chr3R_18_18615001 chr3R_18615001 RAL-235 2041 chr3R 18670367 18670405 chr3R 18670473 18670518 19 105 3.5 5.0 4.2 3.7 151 chr3R 18670367 intron CG7702 + chr3R 18670442 intron CG7702 + chr3R 18670518 intron CG7702 + chr3R_19_18670001 chr3R_18670001 RAL-235 2042 chr3R 18721036 18721057 chr3R 18721193 18721212 6 157 7.5 2.0 4.8 1.0 176 chr3R 18721036 intron Cha + chr3R 18721124 intron Cha + chr3R 18721212 intron Cha + chr3R_6_18720001 chr3R_18720001 RAL-235 2043 chr3R 18781689 18781708 chr3R 18781785 18781804 4 93 8.0 6.0 7.0 0.5 115 chr3R 18781689 intron CG7720 - chr3R 18781746 intron CG7720 - chr3R 18781804 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-235 2044 chr3R 18785871 18785903 chr3R 18785948 18785967 18 84 3.5 6.0 4.8 3.1 96 chr3R 18785871 intron CG7720 - chr3R 18785919 intron CG7720 - chr3R 18785967 intron CG7720 - chr3R_18_18785001 chr3R_18785001 RAL-235 2045 chr3R 18792788 18792832 chr3R 18792891 18792930 4 100 4.0 0.0 2.0 1.3 142 chr3R 18792788 intron CG7720 - chr3R 18792859 intron CG7720 - chr3R 18792930 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-235 2046 chr3R 18807324 18807329 chr3R 18807419 18807425 4 95 6.0 0.0 3.0 1.0 101 chr3R 18807324 intron CG18208 - chr3R 18807374 intron CG18208 - chr3R 18807425 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-235 2047 chr3R 18808465 18808504 chr3R 18808552 18808573 4 78 1.5 1.0 1.2 1.8 108 chr3R 18808465 intron CG18208 - chr3R 18808519 intron CG18208 - chr3R 18808573 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-235 2048 chr3R 18812062 18812108 chr3R 18812154 18812203 13 94 3.0 4.0 3.5 2.9 141 chr3R 18812062 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812203 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-235 2049 chr3R 18842885 18842904 chr3R 18842993 18843012 6 108 5.5 5.5 5.5 0.9 127 chr3R 18842885 intron CG18208 - chr3R 18842948 intron CG18208 - chr3R 18843012 intron CG18208 - chr3R_6_18840001 chr3R_18840001 RAL-235 2050 chr3R 18842907 18842932 chr3R 18842992 18843040 7 104 4.5 5.5 5.0 1.2 133 chr3R 18842907 intron CG18208 - chr3R 18842974 intron CG18208 - chr3R 18843040 intron CG18208 - chr3R_7_18840001 chr3R_18840001 RAL-235 2051 chr3R 18862575 18862607 chr3R 18862680 18862712 9 105 0.5 2.0 1.2 4.1 137 chr3R 18862575 intergenic not near genes chr3R 18862644 intergenic not near genes chr3R 18862712 intergenic not near genes chr3R_9_18860001 chr3R_18860001 RAL-235 2052 chr3R 18888835 18888857 chr3R 18889169 18889212 4 344 8.0 6.5 7.2 0.5 377 chr3R 18888835 intergenic not near genes chr3R 18889024 intergenic not near genes chr3R 18889212 intergenic not near genes chr3R_4_18885001 chr3R_18885001 RAL-235 2053 chr3R 18891242 18891285 chr3R 18891388 18891431 10 143 3.5 4.0 3.8 2.1 189 chr3R 18891242 intergenic not near genes chr3R 18891336 intergenic not near genes chr3R 18891431 intergenic not near genes chr3R_10_18890001 chr3R_18890001 RAL-235 2054 chr3R 18932547 18932580 chr3R 18932737 18932747 5 184 1.5 2.0 1.8 1.8 200 chr3R 18932547 intron CG42613 + chr3R 18932647 intron CG42613 + chr3R 18932747 intron CG42613 + chr3R_5_18930001 chr3R_18930001 RAL-235 2055 chr3R 19117044 19117059 chr3R 19117208 19117213 6 161 11.5 0.0 5.8 0.9 169 chr3R 19117044 intron CG6040 + chr3R 19117128 intron CG6040 + chr3R 19117213 intron CG6040 + chr3R_6_19115001 chr3R_19115001 RAL-235 2056 chr3R 19276910 19276942 chr3R 19277010 19277042 11 99 7.0 4.5 5.8 1.6 132 chr3R 19276910 intergenic not near genes chr3R 19276976 intergenic not near genes chr3R 19277042 intergenic not near genes chr3R_11_19275001 chr3R_19275001 RAL-235 2057 chr3R 19340376 19340420 chr3R 19340472 19340512 15 94 3.5 5.5 4.5 2.7 136 chr3R 19340376 intergenic not near genes chr3R 19340444 intergenic not near genes chr3R 19340512 intergenic not near genes chr3R_15_19340001 chr3R_19340001 RAL-235 2058 chr3R 19344659 19344699 chr3R 19344801 19344854 18 152 6.5 9.5 8.0 2.0 195 chr3R 19344659 intergenic not near genes chr3R 19344756 intergenic not near genes chr3R 19344854 intergenic not near genes chr3R_18_19340001 chr3R_19340001 RAL-235 2059 chr3R 19431093 19431127 chr3R 19431348 19431380 13 254 4.5 6.5 5.5 2.0 287 chr3R 19431093 intron CG31221 + chr3R 19431236 intron CG31221 + chr3R 19431380 intron CG31221 + chr3R_13_19430001 chr3R_19430001 RAL-235 2060 chr3R 19431495 19431498 chr3R 19431599 19431602 4 104 2.5 11.0 6.8 0.5 107 chr3R 19431495 intron CG31221 + chr3R 19431548 intron CG31221 + chr3R 19431602 intron CG31221 + chr3R_4_19430001 chr3R_19430001 RAL-235 2061 chr3R 19430634 19430674 chr3R 19434908 19434935 11 4257 18.5 31.0 24.8 0.4 4301 chr3R 19430634 intron CG31221 + chr3R 19432784 intron CG31221 + chr3R 19434935 intron CG31221 + chr3R_11_19430001 chr3R_19430001 RAL-235 2062 chr3R 19440219 19440222 chr3R 19440319 19440322 4 100 3.5 2.5 3.0 1.0 103 chr3R 19440219 intron CG31221 + chr3R 19440270 intron CG31221 + chr3R 19440322 intron CG31221 + chr3R_4_19440001 chr3R_19440001 RAL-235 2063 chr3R 19474191 19474225 chr3R 19474289 19474333 11 101 8.0 0.0 4.0 2.2 142 chr3R 19474191 intron Dys + chr3R 19474262 intron Dys + chr3R 19474333 intron Dys + chr3R_11_19470001 chr3R_19470001 RAL-235 2064 chr3R 19494399 19494414 chr3R 19494499 19494508 6 98 4.0 9.0 6.5 0.8 109 chr3R 19494399 intron Dys + chr3R 19494454 intron Dys + chr3R 19494508 intron Dys + chr3R_6_19490001 chr3R_19490001 RAL-235 2065 chr3R 19602754 19602780 chr3R 19602837 19602878 12 94 8.5 5.5 7.0 1.5 124 chr3R 19602754 intergenic CG7333 + chr3R 19602816 intergenic CG7333 + chr3R 19602878 intergenic CG7333 +,CG7342 + chr3R_12_19600001 chr3R_19600001 RAL-235 2066 chr3R 19627288 19627314 chr3R 19627391 19627417 5 97 6.5 2.0 4.2 1.0 129 chr3R 19627288 intron CG6231 - chr3R 19627352 intron CG6231 - chr3R 19627417 intron CG6231 - chr3R_5_19625001 chr3R_19625001 RAL-235 2067 chr3R 19627320 19627336 chr3R 19627388 19627439 4 91 2.5 2.0 2.2 1.2 119 chr3R 19627320 intron CG6231 - chr3R 19627380 intron CG6231 - chr3R 19627439 intron CG6231 - chr3R_4_19625001 chr3R_19625001 RAL-235 2068 chr3R 19693804 19693823 chr3R 19693908 19693931 4 107 5.0 5.5 5.2 0.6 127 chr3R 19693804 intron Naam + chr3R 19693868 intron Naam + chr3R 19693931 intron Naam + chr3R_4_19690001 chr3R_19690001 RAL-235 2069 chr3R 19716208 19716241 chr3R 19716291 19716318 8 92 2.5 0.0 1.2 3.6 110 chr3R 19716208 intergenic CG34286 - chr3R 19716263 intergenic CG34286 - chr3R 19716318 intergenic CG34286 - chr3R_8_19715001 chr3R_19715001 RAL-235 2070 chr3R 19800208 19800250 chr3R 19800349 19800385 11 138 5.0 1.5 3.2 2.6 177 chr3R 19800208 intron bnl - chr3R 19800296 intron bnl - chr3R 19800385 intron bnl - chr3R_11_19800001 chr3R_19800001 RAL-235 2071 chr3R 19825029 19825043 chr3R 19825119 19825139 6 95 6.5 3.5 5.0 1.0 110 chr3R 19825029 intron bnl - chr3R 19825084 intron bnl - chr3R 19825139 intron bnl - chr3R_6_19825001 chr3R_19825001 RAL-235 2072 chr3R 19827506 19827557 chr3R 19827612 19827663 8 104 3.0 3.0 3.0 2.0 157 chr3R 19827506 intron bnl - chr3R 19827584 intron bnl - chr3R 19827663 exon bnl - chr3R_8_19825001 chr3R_19825001 RAL-235 2073 chr3R 19830872 19830877 chr3R 19830969 19830974 4 97 0.0 3.5 1.8 1.4 102 chr3R 19830872 intron bnl - chr3R 19830923 intron bnl - chr3R 19830974 intron bnl - chr3R_4_19830001 chr3R_19830001 RAL-235 2074 chr3R 19908283 19908301 chr3R 19908367 19908405 7 98 0.0 2.5 1.2 3.2 122 chr3R 19908283 intron RhoGAP92B + chr3R 19908344 intron RhoGAP92B + chr3R 19908405 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_7_19905001 chr3R_19905001 RAL-235 2075 chr3R 19912192 19912234 chr3R 19912289 19912318 14 93 6.5 3.0 4.8 2.4 126 chr3R 19912192 intron RhoGAP92B + chr3R 19912255 intron RhoGAP92B + chr3R 19912318 exon RhoGAP92B + chr3R_14_19910001 chr3R_19910001 RAL-235 2076 chr3R 19945956 19946003 chr3R 19946079 19946114 9 118 6.0 5.0 5.5 1.4 158 chr3R 19945956 intron Hs6st - chr3R 19946035 intron Hs6st - chr3R 19946114 intron Hs6st - chr3R_9_19945001 chr3R_19945001 RAL-235 2077 chr3R 19987170 19987217 chr3R 19987271 19987297 9 97 2.5 5.5 4.0 1.8 127 chr3R 19987170 intron Hs6st - chr3R 19987234 intron Hs6st - chr3R 19987297 intron Hs6st - chr3R_9_19985001 chr3R_19985001 RAL-235 2078 chr3R 19999956 19999986 chr3R 20000132 20000172 8 184 7.0 2.5 4.8 1.4 216 chr3R 19999956 intron Hs6st - chr3R 20000064 intron Hs6st - chr3R 20000172 intron Hs6st - chr3R_8_20000001 chr3R_20000001 RAL-235 2079 chr3R 20060618 20060654 chr3R 20060721 20060742 7 96 6.5 7.0 6.8 0.9 124 chr3R 20060618 intergenic not near genes chr3R 20060680 intergenic not near genes chr3R 20060742 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-235 2080 chr3R 20109547 20109562 chr3R 20114753 20114783 copia 6 5221 3.0 4.5 3.8 1.2 5236 chr3R 20109547 intergenic not near genes chr3R 20112165 intergenic not near genes chr3R 20114783 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-235 2081 chr3R 20156679 20156706 chr3R 20165869 20165890 roo 11 9187 2.5 6.5 4.5 2.0 9211 chr3R 20156679 intergenic not near genes chr3R 20161284 intergenic not near genes chr3R 20165890 intergenic not near genes chr3R_11_20160001 chr3R_20160001 RAL-235 2082 chr3R 20156709 20156716 chr3R 20165864 20165906 roo 4 9181 2.0 6.5 4.2 0.8 9197 chr3R 20156709 intergenic not near genes chr3R 20161308 intergenic not near genes chr3R 20165906 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-235 2083 chr3R 20205549 20205592 chr3R 20205685 20205733 15 140 3.0 7.0 5.0 2.5 184 chr3R 20205549 intron Nlg4 + chr3R 20205641 intron Nlg4 + chr3R 20205733 intron Nlg4 + chr3R_15_20205001 chr3R_20205001 RAL-235 2084 chr3R 20205923 20205931 chr3R 20206018 20206035 6 100 0.0 1.5 0.8 3.3 112 chr3R 20205923 intron Nlg4 + chr3R 20205979 intron Nlg4 + chr3R 20206035 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-235 2085 chr3R 20245263 20245305 chr3R 20248893 20248932 F-element 12 3626 7.5 5.5 6.5 1.6 3669 chr3R 20245263 3` UTR Nlg4 + chr3R 20247098 intergenic not near genes chr3R 20248932 intergenic not near genes chr3R_12_20245001 chr3R_20245001 RAL-235 2086 chr3R 20252229 20252249 chr3R 20252310 20252347 13 93 0.0 0.0 0.0 13.0 118 chr3R 20252229 intergenic not near genes chr3R 20252288 intergenic cic + chr3R 20252347 intergenic cic + chr3R_13_20250001 chr3R_20250001 RAL-235 2087 chr3R 20256844 20256845 chr3R 20256935 20256943 5 97 0.0 12.0 6.0 0.7 99 chr3R 20256844 intron cic + chr3R 20256894 intron cic + chr3R 20256943 intron cic + chr3R_5_20255001 chr3R_20255001 RAL-235 2088 chr3R 20256849 20256865 chr3R 20256932 20256963 9 94 0.0 11.5 5.8 1.3 114 chr3R 20256849 intron cic + chr3R 20256906 intron cic + chr3R 20256963 intron cic + chr3R_9_20255001 chr3R_20255001 RAL-235 2089 chr3R 20266503 20266546 chr3R 20272994 20273032 Burdock 15 6489 5.5 6.5 6.0 2.1 6529 chr3R 20266503 intron cic + chr3R 20269768 intron cic + chr3R 20273032 intron cic + chr3R_15_20265001 chr3R_20265001 RAL-235 2090 chr3R 20282260 20282301 chr3R 20282355 20282397 16 92 1.0 4.5 2.8 4.2 137 chr3R 20282260 intron cic + chr3R 20282328 intron cic + chr3R 20282397 intron cic + chr3R_16_20280001 chr3R_20280001 RAL-235 2091 chr3R 20312858 20312876 chr3R 20312944 20312982 8 104 5.0 5.5 5.2 1.3 124 chr3R 20312858 intron CG42668 + chr3R 20312920 intron CG42668 + chr3R 20312982 intron CG42668 + chr3R_8_20310001 chr3R_20310001 RAL-235 2092 chr3R 20330980 20331027 chr3R 20331483 20331533 roo 20 503 3.0 5.5 4.2 3.8 553 chr3R 20330980 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331533 intergenic not near genes chr3R_20_20330001 chr3R_20330001 RAL-235 2093 chr3R 20410867 20410892 chr3R 20410953 20410989 12 101 3.0 3.0 3.0 3.0 122 chr3R 20410867 intron Gfrl - chr3R 20410928 intron Gfrl - chr3R 20410989 intron Gfrl - chr3R_12_20410001 chr3R_20410001 RAL-235 2094 chr3R 20411200 20411242 chr3R 20411435 20411465 19 228 2.5 3.5 3.0 4.8 265 chr3R 20411200 exon Gfrl - chr3R 20411332 intron Gfrl - chr3R 20411465 intron Gfrl - chr3R_19_20410001 chr3R_20410001 RAL-235 2095 chr3R 20433090 20433135 chr3R 20433199 20433245 12 108 4.5 9.5 7.0 1.5 155 chr3R 20433090 intron Gfrl - chr3R 20433168 intron Gfrl - chr3R 20433245 intron Gfrl - chr3R_12_20430001 chr3R_20430001 RAL-235 2096 chr3R 20512994 20513035 chr3R 20515707 20515758 opus 15 2720 5.5 5.0 5.2 2.4 2764 chr3R 20512994 intergenic not near genes chr3R 20514376 intergenic not near genes chr3R 20515758 intergenic not near genes chr3R_15_20510001 chr3R_20510001 RAL-235 2097 chr3R 20594463 20594513 chr3R 20594573 20594620 18 109 5.5 0.5 3.0 4.5 157 chr3R 20594463 intron bon + chr3R 20594542 intron bon + chr3R 20594620 intron bon + chr3R_18_20590001 chr3R_20590001 RAL-235 2098 chr3R 20703468 20703515 chr3R 20703876 20703929 16 408 3.0 5.0 4.0 3.2 461 chr3R 20703468 intron Oamb - chr3R 20703698 intron Oamb - chr3R 20703929 intron Oamb - chr3R_16_20700001 chr3R_20700001 RAL-235 2099 chr3R 20707732 20707770 chr3R 20707959 20707988 17 233 1.5 3.5 2.5 4.9 256 chr3R 20707732 intron Oamb - chr3R 20707860 intron Oamb - chr3R 20707988 intron Oamb - chr3R_17_20705001 chr3R_20705001 RAL-235 2100 chr3R 20730910 20731061 chr3R 20731030 20731169 13 111 0.5 0.5 0.5 8.7 259 chr3R 20730910 intergenic not near genes chr3R 20731040 intergenic not near genes chr3R 20731169 intergenic CG31205 + chr3R_13_20730001 chr3R_20730001 RAL-235 2101 chr3R 20771707 20771716 chr3R 20771799 20771806 4 93 0.0 7.0 3.5 0.9 99 chr3R 20771707 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771806 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-235 2102 chr3R 20787430 20787448 chr3R 20787541 20787553 6 109 4.5 7.0 5.8 0.9 123 chr3R 20787430 intron Syp + chr3R 20787492 intron Syp + chr3R 20787553 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-235 2103 chr3R 20787452 20787455 chr3R 20787529 20787565 5 97 4.5 5.0 4.8 0.9 113 chr3R 20787452 intron Syp + chr3R 20787508 intron Syp + chr3R 20787565 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-235 2104 chr3R 20841553 20841600 chr3R 20841734 20841783 13 174 2.0 5.5 3.8 2.7 230 chr3R 20841553 intergenic not near genes chr3R 20841668 intergenic CG15695 + chr3R 20841783 intergenic CG15695 + chr3R_13_20840001 chr3R_20840001 RAL-235 2105 chr3R 20850086 20850108 chr3R 20850182 20850182 9 95 0.0 4.0 2.0 3.0 96 chr3R 20850086 intergenic RpS30 + chr3R 20850134 intergenic RpS30 + chr3R 20850182 intergenic RpS30 + chr3R_9_20850001 chr3R_20850001 RAL-235 2106 chr3R 20854494 20854518 chr3R 20859274 20859293 Doc 6 4775 7.5 4.0 5.8 0.9 4799 chr3R 20854494 intron Ir93a - chr3R 20856894 intron Ir93a - chr3R 20859293 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-235 2107 chr3R 20870235 20870252 chr3R 20870340 20870357 7 104 4.5 2.5 3.5 1.6 122 chr3R 20870235 intergenic not near genes chr3R 20870296 intergenic not near genes chr3R 20870357 intergenic not near genes chr3R_7_20870001 chr3R_20870001 RAL-235 2108 chr3R 20870259 20870284 chr3R 20870335 20870389 8 98 3.0 2.0 2.5 2.3 130 chr3R 20870259 intergenic not near genes chr3R 20870324 intergenic not near genes chr3R 20870389 intergenic not near genes chr3R_8_20870001 chr3R_20870001 RAL-235 2109 chr3R 20966135 20966157 chr3R 20966238 20966251 9 102 0.5 10.0 5.2 1.5 116 chr3R 20966135 intron Atpalpha + chr3R 20966193 intron Atpalpha + chr3R 20966251 intron Atpalpha + chr3R_9_20965001 chr3R_20965001 RAL-235 2110 chr3R 21020378 21020433 chr3R 21020474 21020524 14 93 6.5 9.0 7.8 1.6 146 chr3R 21020378 3` UTR Rlip + chr3R 21020451 3` UTR Rlip + chr3R 21020524 3` UTR Rlip + chr3R_14_21020001 chr3R_21020001 RAL-235 2111 chr3R 21108018 21108066 chr3R 21108299 21108340 12 273 0.0 0.5 0.2 10.0 322 chr3R 21108018 intergenic Sec15 -,rtet + chr3R 21108179 intergenic Sec15 -,rtet + chr3R 21108340 intergenic rtet +,Sec15 - chr3R_12_21105001 chr3R_21105001 RAL-235 2112 chr3R 21132613 21132647 chr3R 21132716 21132749 6 100 4.0 0.0 2.0 2.0 136 chr3R 21132613 3` UTR Ice2 + chr3R 21132681 3` UTR Ice2 + chr3R 21132749 3` UTR CG7009 - chr3R_6_21130001 chr3R_21130001 RAL-235 2113 chr3R 21154530 21154585 chr3R 21154755 21154820 13 230 4.0 0.0 2.0 4.3 290 chr3R 21154530 intron SNF4Agamma + chr3R 21154675 intron SNF4Agamma + chr3R 21154820 intron SNF4Agamma + chr3R_13_21150001 chr3R_21150001 RAL-235 2114 chr3R 21163252 21163272 chr3R 21163340 21163370 5 94 0.0 5.5 2.8 1.3 118 chr3R 21163252 intron SNF4Agamma + chr3R 21163311 intron SNF4Agamma + chr3R 21163370 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-235 2115 chr3R 21214725 21214744 chr3R 21214917 21214936 7 190 4.5 1.0 2.8 1.8 211 chr3R 21214725 intergenic CG5862 + chr3R 21214830 intergenic CG5862 + chr3R 21214936 intergenic CG5862 + chr3R_7_21210001 chr3R_21210001 RAL-235 2116 chr3R 21236454 21236502 chr3R 21236551 21236592 16 92 3.5 7.0 5.2 2.6 138 chr3R 21236454 intron e - chr3R 21236523 intron e - chr3R 21236592 intron e - chr3R_16_21235001 chr3R_21235001 RAL-235 2117 chr3R 21240441 21240478 chr3R 21240538 21240590 9 107 2.5 2.5 2.5 2.6 149 chr3R 21240441 intergenic not near genes chr3R 21240516 intergenic not near genes chr3R 21240590 intergenic not near genes chr3R_9_21240001 chr3R_21240001 RAL-235 2118 chr3R 21383266 21383301 chr3R 21383361 21383401 12 93 0.0 1.5 0.8 6.7 135 chr3R 21383266 intergenic not near genes chr3R 21383334 intergenic not near genes chr3R 21383401 intergenic not near genes chr3R_12_21380001 chr3R_21380001 RAL-235 2119 chr3R 21387799 21387808 chr3R 21387950 21387984 4 165 3.0 6.0 4.5 0.7 185 chr3R 21387799 intergenic not near genes chr3R 21387892 intergenic not near genes chr3R 21387984 intergenic not near genes chr3R_4_21385001 chr3R_21385001 RAL-235 2120 chr3R 21464388 21464429 chr3R 21464488 21464533 9 104 2.5 2.0 2.2 2.8 145 chr3R 21464388 intergenic not near genes chr3R 21464460 intergenic not near genes chr3R 21464533 intergenic not near genes chr3R_9_21460001 chr3R_21460001 RAL-235 2121 chr3R 21506853 21506911 chr3R 21506959 21507011 20 104 0.0 6.0 3.0 5.0 158 chr3R 21506853 intron C15 + chr3R 21506932 intron C15 + chr3R 21507011 intron C15 + chr3R_20_21505001 chr3R_21505001 RAL-235 2122 chr3R 21519967 21520126 chr3R 21520088 21520235 28 117 1.5 1.0 1.2 12.7 268 chr3R 21519967 intergenic not near genes chr3R 21520101 intergenic not near genes chr3R 21520235 intergenic not near genes chr3R_28_21520001 chr3R_21520001 RAL-235 2123 chr3R 21554818 21554856 chr3R 21554931 21554969 7 113 4.0 5.0 4.5 1.3 151 chr3R 21554818 intron slou - chr3R 21554894 intron slou - chr3R 21554969 intron slou - chr3R_7_21550001 chr3R_21550001 RAL-235 2124 chr3R 21569819 21569869 chr3R 21569920 21569970 11 95 1.0 4.5 2.8 2.9 151 chr3R 21569819 intergenic InR - chr3R 21569894 intergenic InR - chr3R 21569970 intergenic InR - chr3R_11_21565001 chr3R_21565001 RAL-235 2125 chr3R 21613281 21613317 chr3R 21613389 21613408 4 99 2.0 2.0 2.0 1.3 127 chr3R 21613281 intron InR - chr3R 21613344 intron InR - chr3R 21613408 intron InR - chr3R_4_21610001 chr3R_21610001 RAL-235 2126 chr3R 21725674 21725686 chr3R 21725830 21725842 5 156 0.0 1.5 0.8 2.8 168 chr3R 21725674 intergenic not near genes chr3R 21725758 intergenic not near genes chr3R 21725842 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-235 2127 chr3R 21883951 21883990 chr3R 21884049 21884080 6 94 1.0 5.5 3.2 1.4 129 chr3R 21883951 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884016 intron,3` UTR CR45046 -,fit - chr3R 21884080 3` UTR,exon CR45046 -,fit - chr3R_6_21880001 chr3R_21880001 RAL-235 2128 chr3R 21903614 21903635 chr3R 21903731 21903752 6 114 0.0 2.5 1.2 2.7 138 chr3R 21903614 intron CG6678 + chr3R 21903683 intron CG6678 + chr3R 21903752 intron CG6678 + chr3R_6_21900001 chr3R_21900001 RAL-235 2129 chr3R 21907534 21907534 chr3R 28831801 28831802 5 6924267 20.0 7.5 13.8 0.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-235 2130 chr3R 21907535 21907535 chr3R 28831801 28831802 4 6924266 19.0 7.5 13.2 0.3 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-235 2131 chr3R 21907536 21907536 chr3R 28831801 28831802 15 6924265 18.5 7.5 13.0 1.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-235 2132 chr3R 22055565 22055588 chr3R 22055754 22055780 5 194 3.0 1.5 2.2 1.6 215 chr3R 22055565 intron how + chr3R 22055672 intron how + chr3R 22055780 intron how + chr3R_5_22055001 chr3R_22055001 RAL-235 2133 chr3R 22239475 22239522 chr3R 22248555 22248555 roo 8 9069 6.5 0.0 3.2 1.9 9080 chr3R 22239475 intron SKIP + chr3R 22244015 intron SKIP + chr3R 22248555 intron SKIP + chr3R_8_22240001 chr3R_22240001 RAL-235 2134 chr3R 22346183 22346212 chr3R 22346266 22346316 4 97 3.5 3.0 3.2 1.0 133 chr3R 22346183 intergenic not near genes chr3R 22346250 intergenic not near genes chr3R 22346316 intergenic not near genes chr3R_4_22345001 chr3R_22345001 RAL-235 2135 chr3R 22434865 22434920 chr3R 22434996 22435037 4 122 2.0 1.0 1.5 1.6 172 chr3R 22434865 intron CG13847 - chr3R 22434951 intron CG13847 - chr3R 22435037 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-235 2136 chr3R 22450533 22450575 chr3R 22453193 22453235 NOF 5 2652 4.5 6.0 5.2 0.8 2702 chr3R 22450533 intron CG34376 + chr3R 22451884 intron CG34376 + chr3R 22453235 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-235 2137 chr3R 22493868 22493879 chr3R 22493921 22493973 6 69 5.0 4.5 4.8 1.0 105 chr3R 22493868 intergenic CG7046 + chr3R 22493920 intergenic CG7046 + chr3R 22493973 intergenic CG7046 + chr3R_6_22490001 chr3R_22490001 RAL-235 2138 chr3R 22538425 22538472 chr3R 22538530 22538576 8 99 3.5 5.0 4.2 1.5 151 chr3R 22538425 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538576 intron CG5326 - chr3R_8_22535001 chr3R_22535001 RAL-235 2139 chr3R 22769089 22769125 chr3R 22769166 22769221 15 86 4.0 4.5 4.2 2.9 132 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769155 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769221 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_15_22765001 chr3R_22765001 RAL-235 2140 chr3R 22797762 22797938 chr3R 22797843 22798044 13 108 0.0 0.0 0.0 13.0 282 chr3R 22797762 intergenic not near genes chr3R 22797903 intergenic not near genes chr3R 22798044 intergenic not near genes chr3R_13_22795001 chr3R_22795001 RAL-235 2141 chr3R 22803433 22803468 chr3R 22803639 22803644 12 201 2.5 6.0 4.2 2.3 211 chr3R 22803433 intergenic not near genes chr3R 22803538 intergenic not near genes chr3R 22803644 intergenic not near genes chr3R_12_22800001 chr3R_22800001 RAL-235 2142 chr3R 22827405 22827439 chr3R 22827495 22827535 11 92 4.0 4.0 4.0 2.2 130 chr3R 22827405 intergenic CR44350 - chr3R 22827470 intergenic CR44350 - chr3R 22827535 intergenic CR44350 - chr3R_11_22825001 chr3R_22825001 RAL-235 2143 chr3R 22840818 22840851 chr3R 22841277 22841308 12 468 1.0 4.0 2.5 3.4 490 chr3R 22840818 intergenic not near genes chr3R 22841063 intergenic not near genes chr3R 22841308 intergenic not near genes chr3R_12_22840001 chr3R_22840001 RAL-235 2144 chr3R 22853280 22853296 chr3R 22853369 22853377 7 90 7.5 7.0 7.2 0.9 97 chr3R 22853280 intergenic not near genes chr3R 22853328 intergenic not near genes chr3R 22853377 intergenic not near genes chr3R_7_22850001 chr3R_22850001 RAL-235 2145 chr3R 22863909 22863929 chr3R 22864006 22864010 4 89 2.0 3.0 2.5 1.1 101 chr3R 22863909 intergenic not near genes chr3R 22863960 intergenic not near genes chr3R 22864010 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-235 2146 chr3R 22889000 22889044 chr3R 22889089 22889119 9 89 3.0 2.5 2.8 2.4 119 chr3R 22889000 intergenic not near genes chr3R 22889060 intergenic not near genes chr3R 22889119 intergenic not near genes chr3R_9_22885001 chr3R_22885001 RAL-235 2147 chr3R 23073663 23073676 chr3R 23073745 23073784 4 98 2.5 2.5 2.5 1.1 121 chr3R 23073663 intron CG13830 - chr3R 23073724 intron CG13830 - chr3R 23073784 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-235 2148 chr3R 23181085 23181104 chr3R 23181184 23181208 4 103 0.0 10.0 5.0 0.7 123 chr3R 23181085 intron Irk1 + chr3R 23181146 intron Irk1 + chr3R 23181208 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-235 2149 chr3R 23182473 23182653 chr3R 23182610 23182757 17 129 0.0 0.0 0.0 17.0 284 chr3R 23182473 intron Irk1 + chr3R 23182615 intron Irk1 + chr3R 23182757 intron Irk1 + chr3R_17_23180001 chr3R_23180001 RAL-235 2150 chr3R 23225037 23225047 chr3R 23225133 23225143 6 95 5.0 0.0 2.5 1.7 106 chr3R 23225037 intron cnc - chr3R 23225090 intron cnc - chr3R 23225143 intron cnc - chr3R_6_23225001 chr3R_23225001 RAL-235 2151 chr3R 23245973 23246022 chr3R 23246075 23246087 7 86 1.0 1.0 1.0 3.5 114 chr3R 23245973 intron CG4467 - chr3R 23246030 intron CG4467 - chr3R 23246087 intron CG4467 - chr3R_7_23245001 chr3R_23245001 RAL-235 2152 chr3R 23305269 23305272 chr3R 23305591 23305607 4 334 1.5 3.0 2.2 1.2 338 chr3R 23305269 intron pnt - chr3R 23305438 intron pnt - chr3R 23305607 intron pnt - chr3R_4_23305001 chr3R_23305001 RAL-235 2153 chr3R 23415275 23415314 chr3R 23415367 23415401 13 93 3.0 3.0 3.0 3.2 126 chr3R 23415275 intron CG4374 - chr3R 23415338 intron CG4374 - chr3R 23415401 intron CG4374 - chr3R_13_23415001 chr3R_23415001 RAL-235 2154 chr3R 23453665 23453708 chr3R 23453764 23453799 13 97 4.5 6.0 5.2 2.1 134 chr3R 23453665 intron CG4374 - chr3R 23453732 intron CG4374 - chr3R 23453799 intron CG4374 - chr3R_13_23450001 chr3R_23450001 RAL-235 2155 chr3R 23558380 23558427 chr3R 23560181 23560214 Bari1 10 1799 2.0 3.0 2.5 2.9 1834 chr3R 23558380 intron beat-IV + chr3R 23559297 intron beat-IV + chr3R 23560214 intron beat-IV + chr3R_10_23555001 chr3R_23555001 RAL-235 2156 chr3R 23564428 23564444 chr3R 23564592 23564608 9 163 8.5 4.0 6.2 1.2 180 chr3R 23564428 intron beat-IV + chr3R 23564518 intron beat-IV + chr3R 23564608 intron beat-IV + chr3R_9_23560001 chr3R_23560001 RAL-235 2157 chr3R 23564445 23564473 chr3R 23564584 23564637 13 155 4.0 3.0 3.5 2.9 192 chr3R 23564445 intron beat-IV + chr3R 23564541 intron beat-IV + chr3R 23564637 intron beat-IV + chr3R_13_23560001 chr3R_23560001 RAL-235 2158 chr3R 23733125 23733158 chr3R 23733260 23733285 7 132 6.5 5.0 5.8 1.0 160 chr3R 23733125 intron Rpn9 - chr3R 23733205 intron Rpn9 - chr3R 23733285 5` UTR Rpn9 - chr3R_7_23730001 chr3R_23730001 RAL-235 2159 chr3R 23851067 23851089 chr3R 23858754 23858756 opus 12 7685 4.5 11.5 8.0 1.3 7689 chr3R 23851067 3` UTR CG34355 + chr3R 23854912 intergenic not near genes chr3R 23858756 intergenic not near genes chr3R_12_23850001 chr3R_23850001 RAL-235 2160 chr3R 23880855 23880897 chr3R 23880945 23880985 6 92 40.0 39.5 39.8 0.1 130 chr3R 23880855 intron Pli - chr3R 23880920 intron Pli - chr3R 23880985 intron Pli - chr3R_6_23880001 chr3R_23880001 RAL-235 2161 chr3R 23888066 23888114 chr3R 23888172 23888217 24 104 4.0 6.0 5.0 4.0 151 chr3R 23888066 intron Pli - chr3R 23888142 intron Pli - chr3R 23888217 intron Pli - chr3R_24_23885001 chr3R_23885001 RAL-235 2162 chr3R 23944897 23944931 chr3R 23944996 23945026 9 100 4.5 2.5 3.5 2.0 129 chr3R 23944897 intron CG12268 - chr3R 23944962 intron CG12268 - chr3R 23945026 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-235 2163 chr3R 24011652 24011678 chr3R 24011752 24011781 6 102 0.5 7.0 3.8 1.2 129 chr3R 24011652 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011781 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-235 2164 chr3R 24042007 24042027 chr3R 24042111 24042160 11 121 0.5 7.0 3.8 2.3 153 chr3R 24042007 3` UTR spas + chr3R 24042084 3` UTR spas + chr3R 24042160 3` UTR spas + chr3R_11_24040001 chr3R_24040001 RAL-235 2165 chr3R 24072075 24072091 chr3R 24072527 24072536 jockey 4 450 6.5 6.5 6.5 0.5 461 chr3R 24072075 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072536 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-235 2166 chr3R 24072093 24072119 chr3R 24072525 24072559 jockey 4 434 2.0 6.5 4.2 0.8 466 chr3R 24072093 intron 4EHP - chr3R 24072326 intron 4EHP - chr3R 24072559 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-235 2167 chr3R 24076912 24076934 chr3R 24078383 24078416 hobo 4 1476 4.5 3.0 3.8 0.8 1504 chr3R 24076912 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078416 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-235 2168 chr3R 24144556 24144597 chr3R 24144712 24144760 14 152 4.0 6.5 5.2 2.3 204 chr3R 24144556 intron Kal1 + chr3R 24144658 intron Kal1 + chr3R 24144760 intron Kal1 + chr3R_14_24140001 chr3R_24140001 RAL-235 2169 chr3R 24207213 24207245 chr3R 24212294 24212323 flea 13 5087 4.0 7.5 5.8 1.9 5110 chr3R 24207213 intron twin - chr3R 24209768 intron twin - chr3R 24212323 intron twin - chr3R_13_24205001 chr3R_24205001 RAL-235 2170 chr3R 24431584 24431625 chr3R 24431678 24431724 12 96 5.0 0.0 2.5 3.4 140 chr3R 24431584 intron nAChRalpha1 - chr3R 24431654 intron nAChRalpha1 - chr3R 24431724 intron nAChRalpha1 - chr3R_12_24430001 chr3R_24430001 RAL-235 2171 chr3R 24493266 24493287 chr3R 24493505 24493521 BS 9 242 9.0 6.5 7.8 1.0 255 chr3R 24493266 intergenic not near genes chr3R 24493394 intergenic not near genes chr3R 24493521 intergenic not near genes chr3R_9_24490001 chr3R_24490001 RAL-235 2172 chr3R 24493288 24493305 chr3R 24493502 24493553 BS 5 238 5.5 6.5 6.0 0.7 265 chr3R 24493288 intergenic not near genes chr3R 24493420 intergenic not near genes chr3R 24493553 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-235 2173 chr3R 24495297 24495319 chr3R 24495376 24495418 10 89 2.5 3.0 2.8 2.6 121 chr3R 24495297 intergenic not near genes chr3R 24495358 intergenic not near genes chr3R 24495418 intergenic not near genes chr3R_10_24495001 chr3R_24495001 RAL-235 2174 chr3R 24667594 24667633 chr3R 24667691 24667720 10 94 4.0 0.0 2.0 3.3 126 chr3R 24667594 intron slo + chr3R 24667657 intron slo + chr3R 24667720 intron slo + chr3R_10_24665001 chr3R_24665001 RAL-235 2175 chr3R 24787535 24787549 chr3R 24787626 24787640 7 93 9.5 2.0 5.8 1.0 105 chr3R 24787535 intergenic CG5805 - chr3R 24787588 intergenic CG5805 -,Ets96B + chr3R 24787640 intergenic CG5805 -,Ets96B + chr3R_7_24785001 chr3R_24785001 RAL-235 2176 chr3R 24790691 24790714 chr3R 24790777 24790816 8 95 2.5 1.5 2.0 2.7 125 chr3R 24790691 intron Ets96B + chr3R 24790754 intron Ets96B + chr3R 24790816 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-235 2177 chr3R 24842093 24842135 chr3R 24842194 24842241 11 104 2.0 4.5 3.2 2.6 148 chr3R 24842093 5` UTR Esp + chr3R 24842167 5` UTR Esp + chr3R 24842241 5` UTR Esp + chr3R_11_24840001 chr3R_24840001 RAL-235 2178 chr3R 24854875 24854914 chr3R 24854971 24855016 9 99 2.0 4.0 3.0 2.2 141 chr3R 24854875 3` UTR HdacX - chr3R 24854946 3` UTR HdacX - chr3R 24855016 3` UTR HdacX - chr3R_9_24850001 chr3R_24850001 RAL-235 2179 chr3R 24912459 24912513 chr3R 24912561 24912615 13 98 2.5 4.0 3.2 3.1 156 chr3R 24912459 intergenic not near genes chr3R 24912537 intergenic CR44267 + chr3R 24912615 intergenic CR44267 + chr3R_13_24910001 chr3R_24910001 RAL-235 2180 chr3R 24927112 24927148 chr3R 24931923 24931954 Doc 11 4808 9.0 4.0 6.5 1.5 4842 chr3R 24927112 intergenic Trf4-2 + chr3R 24929533 intergenic not near genes chr3R 24931954 intergenic CG11771 + chr3R_11_24925001 chr3R_24925001 RAL-235 2181 chr3R 24974903 24974935 chr3R 24974997 24975024 17 93 1.5 7.5 4.5 3.1 121 chr3R 24974903 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975024 intergenic not near genes chr3R_17_24970001 chr3R_24970001 RAL-235 2182 chr3R 25072739 25072784 chr3R 25072851 25072896 20 110 6.5 4.0 5.2 3.2 157 chr3R 25072739 3` UTR CG9996 - chr3R 25072818 3` UTR CG9996 - chr3R 25072896 exon CG9996 - chr3R_20_25070001 chr3R_25070001 RAL-235 2183 chr3R 25136386 25136430 chr3R 25136486 25136503 17 97 2.5 7.0 4.8 2.9 117 chr3R 25136386 3` UTR Bili + chr3R 25136444 3` UTR Bili + chr3R 25136503 3` UTR Bili + chr3R_17_25135001 chr3R_25135001 RAL-235 2184 chr3R 25166344 25166393 chr3R 25166440 25166489 14 95 4.0 5.5 4.8 2.4 145 chr3R 25166344 intergenic not near genes chr3R 25166416 intergenic not near genes chr3R 25166489 intergenic not near genes chr3R_14_25165001 chr3R_25165001 RAL-235 2185 chr3R 25235812 25235846 chr3R 25235897 25235946 13 97 2.5 4.0 3.2 3.1 134 chr3R 25235812 intergenic CG10420 - chr3R 25235879 intergenic CG10420 - chr3R 25235946 intergenic CG10420 - chr3R_13_25235001 chr3R_25235001 RAL-235 2186 chr3R 25269220 25269258 chr3R 25269301 25269335 12 84 3.5 2.5 3.0 3.0 115 chr3R 25269220 intron CR45214 - chr3R 25269278 intron CR45214 - chr3R 25269335 intron CR45214 - chr3R_12_25265001 chr3R_25265001 RAL-235 2187 chr3R 25368457 25368493 chr3R 25368595 25368624 15 134 4.0 0.0 2.0 5.0 167 chr3R 25368457 intron Fur1 - chr3R 25368540 intron Fur1 - chr3R 25368624 intron Fur1 - chr3R_15_25365001 chr3R_25365001 RAL-235 2188 chr3R 25447092 25447137 chr3R 25447188 25447234 19 94 2.5 8.5 5.5 2.9 142 chr3R 25447092 intron Fur1 - chr3R 25447163 intron Fur1 - chr3R 25447234 intron Fur1 - chr3R_19_25445001 chr3R_25445001 RAL-235 2189 chr3R 25528026 25528043 chr3R 25528141 25528160 4 116 8.0 6.5 7.2 0.5 134 chr3R 25528026 intron msi + chr3R 25528093 intron msi + chr3R 25528160 intron msi + chr3R_4_25525001 chr3R_25525001 RAL-235 2190 chr3R 7773344 7773344 chr3R 25538124 25538124 8 17764780 20.0 16.5 18.2 0.4 17764780 chr3R 7773344 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538124 intron msi + chr3R_8_16655001 chr3R_16655001 RAL-235 2191 chr3R 25671233 25671267 chr3R 25671336 25671387 4 115 4.5 2.5 3.5 0.9 154 chr3R 25671233 intron Lgr3 + chr3R 25671310 intron Lgr3 + chr3R 25671387 intron Lgr3 + chr3R_4_25670001 chr3R_25670001 RAL-235 2192 chr3R 25689116 25689163 chr3R 25689236 25689281 14 117 2.0 4.0 3.0 3.5 165 chr3R 25689116 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689281 intergenic not near genes chr3R_14_25685001 chr3R_25685001 RAL-235 2193 chr3R 25725812 25725836 chr3R 25734990 25735016 roo 7 9178 5.0 5.5 5.2 1.1 9204 chr3R 25725812 intron LpR2 - chr3R 25730414 intron LpR2 - chr3R 25735016 intron LpR2 - chr3R_7_25730001 chr3R_25730001 RAL-235 2194 chr3R 25843621 25843661 chr3R 25843770 25843786 10 142 5.0 7.5 6.2 1.4 165 chr3R 25843621 intergenic CR45653 + chr3R 25843704 intergenic CR45653 + chr3R 25843786 intergenic CR45653 + chr3R_10_25840001 chr3R_25840001 RAL-235 2195 chr3R 25847712 25847723 chr3R 25847854 25847894 6 160 4.0 1.5 2.8 1.6 182 chr3R 25847712 intergenic CR45656 -,CR45657 + chr3R 25847803 intergenic CR45656 -,CR45657 + chr3R 25847894 intergenic CR45657 +,CR45656 - chr3R_6_25845001 chr3R_25845001 RAL-235 2196 chr3R 25936398 25936445 chr3R 25936512 25936528 11 110 2.0 5.0 3.5 2.4 130 chr3R 25936398 intron CCAP-R - chr3R 25936463 intron CCAP-R - chr3R 25936528 intron CCAP-R - chr3R_11_25935001 chr3R_25935001 RAL-235 2197 chr3R 26013850 26013865 chr3R 26013935 26013965 7 96 6.5 5.5 6.0 1.0 115 chr3R 26013850 intergenic not near genes chr3R 26013908 intergenic not near genes chr3R 26013965 intergenic not near genes chr3R_7_26010001 chr3R_26010001 RAL-235 2198 chr3R 26140504 26140541 chr3R 26140626 26140674 11 126 4.5 5.5 5.0 1.8 170 chr3R 26140504 intergenic not near genes chr3R 26140589 intergenic not near genes chr3R 26140674 intergenic not near genes chr3R_11_26140001 chr3R_26140001 RAL-235 2199 chr3R 26144429 26144482 chr3R 26144527 26144551 18 92 4.0 1.5 2.8 4.7 122 chr3R 26144429 intergenic not near genes chr3R 26144490 intergenic not near genes chr3R 26144551 intergenic not near genes chr3R_18_26140001 chr3R_26140001 RAL-235 2200 chr3R 26166155 26166199 chr3R 26166260 26166305 13 100 6.0 1.0 3.5 2.9 150 chr3R 26166155 intergenic not near genes chr3R 26166230 intergenic not near genes chr3R 26166305 intergenic not near genes chr3R_13_26165001 chr3R_26165001 RAL-235 2201 chr3R 26235516 26235521 chr3R 26235568 26235619 5 81 0.5 3.5 2.0 1.7 103 chr3R 26235516 5` UTR CR42745 + chr3R 26235568 5` UTR CR42745 + chr3R 26235619 intron CR42745 + chr3R_5_26235001 chr3R_26235001 RAL-235 2202 chr3R 26292103 26292136 chr3R 26292193 26292236 10 93 3.0 5.5 4.2 1.9 133 chr3R 26292103 intergenic not near genes chr3R 26292170 intergenic not near genes chr3R 26292236 intergenic not near genes chr3R_10_26290001 chr3R_26290001 RAL-235 2203 chr3R 26301812 26301824 chr3R 26301913 26301925 4 99 13.5 3.0 8.2 0.4 113 chr3R 26301812 intergenic not near genes chr3R 26301868 intergenic not near genes chr3R 26301925 intergenic not near genes chr3R_4_26300001 chr3R_26300001 RAL-235 2204 chr3R 26301830 26301859 chr3R 26301912 26301959 15 93 5.5 3.0 4.2 2.9 129 chr3R 26301830 intergenic not near genes chr3R 26301894 intergenic not near genes chr3R 26301959 intergenic not near genes chr3R_15_26300001 chr3R_26300001 RAL-235 2205 chr3R 26302103 26302145 chr3R 26302330 26302372 13 222 4.0 5.0 4.5 2.4 269 chr3R 26302103 intergenic not near genes chr3R 26302238 intergenic not near genes chr3R 26302372 intergenic not near genes chr3R_13_26300001 chr3R_26300001 RAL-235 2206 chr3R 26365090 26365141 chr3R 26365195 26365245 15 102 3.5 3.5 3.5 3.3 155 chr3R 26365090 intergenic not near genes chr3R 26365168 intergenic not near genes chr3R 26365245 intergenic not near genes chr3R_15_26365001 chr3R_26365001 RAL-235 2207 chr3R 26370321 26370352 chr3R 26370426 26370457 9 105 0.0 6.0 3.0 2.2 136 chr3R 26370321 intergenic not near genes chr3R 26370389 intergenic not near genes chr3R 26370457 intergenic not near genes chr3R_9_26370001 chr3R_26370001 RAL-235 2208 chr3R 26376309 26376358 chr3R 26385488 26385496 roo 10 9170 2.0 1.0 1.5 4.0 9187 chr3R 26376309 intergenic not near genes chr3R 26380902 intergenic not near genes chr3R 26385496 intergenic not near genes chr3R_10_26380001 chr3R_26380001 RAL-235 2209 chr3R 26502939 26502986 chr3R 26503283 26503322 6 336 6.0 1.5 3.8 1.2 383 chr3R 26502939 intron plum - chr3R 26503130 intron plum - chr3R 26503322 intron plum - chr3R_6_26500001 chr3R_26500001 RAL-235 2210 chr3R 26510486 26510535 chr3R 26519567 26519581 roo 17 9077 5.5 7.5 6.5 2.3 9095 chr3R 26510486 intron plum - chr3R 26515034 intron plum - chr3R 26519581 intron,5` UTR plum -,CR45226 + chr3R_17_26515001 chr3R_26515001 RAL-235 2211 chr3R 26540987 26541032 chr3R 26541087 26541121 10 93 2.0 7.5 4.8 1.7 134 chr3R 26540987 intron scrib + chr3R 26541054 intron scrib + chr3R 26541121 intron scrib + chr3R_10_26540001 chr3R_26540001 RAL-235 2212 chr3R 26558308 26558361 chr3R 26565638 26565675 Stalker4 6 7314 1.0 2.0 1.5 2.4 7367 chr3R 26558308 intron scrib + chr3R 26561992 intron scrib + chr3R 26565675 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-235 2213 chr3R 26642709 26642759 chr3R 26643122 26643166 jockey 10 409 3.5 6.5 5.0 1.7 457 chr3R 26642709 intergenic not near genes chr3R 26642938 intergenic not near genes chr3R 26643166 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-235 2214 chr3R 26770221 26770268 chr3R 26770318 26770347 19 93 4.5 3.5 4.0 3.8 126 chr3R 26770221 intergenic CR45563 + chr3R 26770284 intergenic CR45563 + chr3R 26770347 intergenic not near genes chr3R_19_26770001 chr3R_26770001 RAL-235 2215 chr3R 26789589 26789604 chr3R 26789682 26789703 11 97 0.0 0.0 0.0 11.0 114 chr3R 26789589 intergenic not near genes chr3R 26789646 intergenic not near genes chr3R 26789703 intergenic not near genes chr3R_11_26785001 chr3R_26785001 RAL-235 2216 chr3R 26810555 26810586 chr3R 26811040 26811082 roo 9 498 3.0 6.5 4.8 1.6 527 chr3R 26810555 intron Tl + chr3R 26810818 intron Tl + chr3R 26811082 intron Tl + chr3R_9_26810001 chr3R_26810001 RAL-235 2217 chr3R 27007408 27007432 chr3R 27016548 27016552 roo 8 9141 5.5 5.0 5.2 1.3 9144 chr3R 27007408 intron RYa-R + chr3R 27011980 intron RYa-R + chr3R 27016552 intron RYa-R + chr3R_8_27010001 chr3R_27010001 RAL-235 2218 chr3R 27027665 27027720 chr3R 27027769 27027815 10 97 2.0 2.5 2.2 3.1 150 chr3R 27027665 intron RYa-R + chr3R 27027740 intron RYa-R + chr3R 27027815 intron RYa-R + chr3R_10_27025001 chr3R_27025001 RAL-235 2219 chr3R 27028705 27028755 chr3R 27028804 27028854 25 98 7.5 0.5 4.0 5.0 149 chr3R 27028705 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028854 intron RYa-R + chr3R_25_27025001 chr3R_27025001 RAL-235 2220 chr3R 27043300 27043340 chr3R 27043410 27043438 8 105 6.5 6.0 6.2 1.1 138 chr3R 27043300 intron RYa-R + chr3R 27043369 intron RYa-R + chr3R 27043438 intron RYa-R + chr3R_8_27040001 chr3R_27040001 RAL-235 2221 chr3R 27077104 27077128 chr3R 27077178 27077228 7 79 6.5 5.5 6.0 1.0 124 chr3R 27077104 intron CG14257 + chr3R 27077166 intron CG14257 + chr3R 27077228 intron CG14257 + chr3R_7_27075001 chr3R_27075001 RAL-235 2222 chr3R 27133501 27133540 chr3R 27133638 27133670 10 134 4.5 2.0 3.2 2.4 169 chr3R 27133501 intron CG6051 - chr3R 27133586 intron CG6051 - chr3R 27133670 intron CG6051 - chr3R_10_27130001 chr3R_27130001 RAL-235 2223 chr3R 27140499 27140544 chr3R 27148123 27148174 412 22 7622 2.5 4.5 3.5 4.9 7675 chr3R 27140499 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148174 intron CG6051 - chr3R_22_27140001 chr3R_27140001 RAL-235 2224 chr3R 27315973 27316013 chr3R 27316069 27316087 8 88 3.5 1.5 2.5 2.3 114 chr3R 27315973 intron CG3339 - chr3R 27316030 intron CG3339 - chr3R 27316087 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-235 2225 chr3R 27329464 27329501 chr3R 27329552 27329598 15 91 6.5 9.5 8.0 1.7 134 chr3R 27329464 intergenic CG3330 - chr3R 27329531 intergenic CG3330 - chr3R 27329598 intergenic CG3330 - chr3R_15_27325001 chr3R_27325001 RAL-235 2226 chr3R 27342773 27342822 chr3R 27351374 27351423 Tirant 12 8600 2.0 8.5 5.2 1.9 8650 chr3R 27342773 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351423 intron CG42534 + chr3R_12_27345001 chr3R_27345001 RAL-235 2227 chr3R 27452569 27452608 chr3R 27452769 27452798 17 197 5.0 4.5 4.8 2.9 229 chr3R 27452569 intergenic not near genes chr3R 27452684 intergenic not near genes chr3R 27452798 intergenic not near genes chr3R_17_27450001 chr3R_27450001 RAL-235 2228 chr3R 27496571 27496604 chr3R 27496696 27496729 9 122 5.0 3.0 4.0 1.8 158 chr3R 27496571 intergenic not near genes chr3R 27496650 intergenic not near genes chr3R 27496729 intergenic not near genes chr3R_9_27495001 chr3R_27495001 RAL-235 2229 chr3R 27521137 27521185 chr3R 27530366 27530414 roo 19 9228 4.0 7.0 5.5 2.9 9277 chr3R 27521137 intron CG12885 + chr3R 27525776 intron CG12885 + chr3R 27530414 intron CG12885 + chr3R_19_27525001 chr3R_27525001 RAL-235 2230 chr3R 27627079 27627096 chr3R 27627190 27627218 5 113 4.5 1.5 3.0 1.2 139 chr3R 27627079 intron Tusp + chr3R 27627148 intron Tusp + chr3R 27627218 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-235 2231 chr3R 27627100 27627116 chr3R 27627187 27627238 5 101 3.0 1.5 2.2 1.6 138 chr3R 27627100 intron Tusp + chr3R 27627169 intron Tusp + chr3R 27627238 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-235 2232 chr3R 27706766 27706795 chr3R 27706863 27706872 11 90 5.0 5.0 5.0 1.8 106 chr3R 27706766 intergenic CG12428 -,CG12877 + chr3R 27706819 intergenic CG12428 -,CG12877 + chr3R 27706872 intergenic CG12428 -,CG12877 + chr3R_11_27705001 chr3R_27705001 RAL-235 2233 chr3R 27725552 27725595 chr3R 27731014 27731047 I-element 18 5458 2.0 1.0 1.5 7.2 5495 chr3R 27725552 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731047 intergenic not near genes chr3R_18_27725001 chr3R_27725001 RAL-235 2234 chr3R 27735214 27735260 chr3R 27735796 27735836 11 578 2.5 6.0 4.2 2.1 622 chr3R 27735214 intergenic not near genes chr3R 27735525 intergenic not near genes chr3R 27735836 intergenic not near genes chr3R_11_27735001 chr3R_27735001 RAL-235 2235 chr3R 27856745 27856791 chr3R 27858242 27858280 hopper2 9 1501 1.5 4.0 2.8 2.4 1535 chr3R 27856745 intron CG34353 - chr3R 27857512 intron CG34353 - chr3R 27858280 intron CG34353 - chr3R_9_27855001 chr3R_27855001 RAL-235 2236 chr3R 27862947 27862986 chr3R 27868260 27868261 Transpac 12 5308 1.5 4.5 3.0 3.0 5314 chr3R 27862947 intron CG34353 - chr3R 27865604 intron CG34353 - chr3R 27868261 intron CG34353 - chr3R_12_27865001 chr3R_27865001 RAL-235 2237 chr3R 27875682 27875727 chr3R 27882755 27882800 297 11 7074 6.5 7.5 7.0 1.4 7118 chr3R 27875682 intron CG34353 - chr3R 27879241 intron CG34353 - chr3R 27882800 intron CG34353 - chr3R_11_27875001 chr3R_27875001 RAL-235 2238 chr3R 28043836 28043882 chr3R 28043969 28044015 9 132 1.0 3.0 2.0 3.0 179 chr3R 28043836 intron CG34362 + chr3R 28043926 intron CG34362 + chr3R 28044015 intron CG34362 + chr3R_9_28040001 chr3R_28040001 RAL-235 2239 chr3R 28068476 28068527 chr3R 28073938 28073949 I-element 10 5454 5.0 3.5 4.2 1.9 5473 chr3R 28068476 intron CG34362 + chr3R 28071212 intron CG34362 + chr3R 28073949 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-235 2240 chr3R 28173660 28173702 chr3R 28181110 28181151 mdg1 19 7445 3.5 3.5 3.5 4.2 7491 chr3R 28173660 intron CG34354 + chr3R 28177406 intron CG34354 + chr3R 28181151 intron CG34354 + chr3R_19_28175001 chr3R_28175001 RAL-235 2241 chr3R 28253327 28253362 chr3R 28255855 28255875 jockey 6 2522 1.5 6.5 4.0 1.2 2548 chr3R 28253327 intergenic not near genes chr3R 28254601 intergenic not near genes chr3R 28255875 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-235 2242 chr3R 28282972 28283006 chr3R 28283621 28283655 12 647 6.5 7.5 7.0 1.5 683 chr3R 28282972 exon CG34436 + chr3R 28283314 exon CG34436 + chr3R 28283655 intergenic CG34437 +,CG34436 + chr3R_12_28280001 chr3R_28280001 RAL-235 2243 chr3R 28302086 28302132 chr3R 28302544 28302574 jockey 16 456 3.5 3.5 3.5 3.6 488 chr3R 28302086 intergenic not near genes chr3R 28302330 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_16_28300001 chr3R_28300001 RAL-235 2244 chr3R 28331501 28331529 chr3R 28331585 28331612 12 95 5.0 5.5 5.2 1.9 111 chr3R 28331501 intron larp - chr3R 28331556 intron larp - chr3R 28331612 intron larp - chr3R_12_28330001 chr3R_28330001 RAL-235 2245 chr3R 28341042 28341064 chr3R 28341114 28341146 8 89 3.5 3.5 3.5 1.8 104 chr3R 28341042 intron Moca-cyp + chr3R 28341094 intron Moca-cyp + chr3R 28341146 intron Moca-cyp + chr3R_8_28340001 chr3R_28340001 RAL-235 2246 chr3R 28352491 28352536 chr3R 28352851 28352896 14 354 3.5 1.5 2.5 4.0 405 chr3R 28352491 exon Or98b + chr3R 28352694 exon Or98b + chr3R 28352896 exon Or98b + chr3R_14_28350001 chr3R_28350001 RAL-235 2247 chr3R 28387457 28387509 chr3R 28387585 28387637 10 127 4.5 1.5 3.0 2.5 180 chr3R 28387457 intergenic not near genes chr3R 28387547 intergenic not near genes chr3R 28387637 intergenic not near genes chr3R_10_28385001 chr3R_28385001 RAL-235 2248 chr3R 28390121 28390144 chr3R 28390196 28390242 6 78 1.0 0.5 0.8 3.3 121 chr3R 28390121 intergenic not near genes chr3R 28390182 intergenic not near genes chr3R 28390242 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-235 2249 chr3R 28421647 28421668 chr3R 28421750 28421769 5 99 4.0 1.0 2.5 1.4 122 chr3R 28421647 intron beat-VI + chr3R 28421708 intron beat-VI + chr3R 28421769 intron beat-VI + chr3R_5_28420001 chr3R_28420001 RAL-235 2250 chr3R 28431378 28431432 chr3R 28432818 28432869 5 1442 29.5 20.5 25.0 0.2 1491 chr3R 28431378 intron beat-VI + chr3R 28432124 intron beat-VI + chr3R 28432869 intron beat-VI + chr3R_5_28430001 chr3R_28430001 RAL-235 2251 chr3R 28478429 28478450 chr3R 28478497 28478516 5 78 1.0 2.0 1.5 2.0 87 chr3R 28478429 intergenic not near genes chr3R 28478472 intergenic not near genes chr3R 28478516 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-235 2252 chr3R 28479144 28479165 chr3R 28479240 28479268 6 97 4.0 4.5 4.2 1.2 124 chr3R 28479144 intergenic not near genes chr3R 28479206 intergenic not near genes chr3R 28479268 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-235 2253 chr3R 28484353 28484376 chr3R 28486250 28486292 93 1904 130.5 177.0 153.8 0.6 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_93_28485001 chr3R_28485001 RAL-235 2254 chr3R 28575892 28575909 chr3R 28576033 28576050 6 141 0.0 7.0 3.5 1.3 158 chr3R 28575892 intergenic not near genes chr3R 28575971 intergenic not near genes chr3R 28576050 intergenic not near genes chr3R_6_28575001 chr3R_28575001 RAL-235 2255 chr3R 28633174 28633184 chr3R 28633274 28633284 4 100 13.5 6.5 10.0 0.4 110 chr3R 28633174 intron CG10011 - chr3R 28633229 intron CG10011 - chr3R 28633284 intron CG10011 - chr3R_4_28630001 chr3R_28630001 RAL-235 2256 chr3R 28633186 28633222 chr3R 28633270 28633322 21 95 7.0 3.5 5.2 3.4 136 chr3R 28633186 intron CG10011 - chr3R 28633254 intron CG10011 - chr3R 28633322 intron CG10011 - chr3R_21_28630001 chr3R_28630001 RAL-235 2257 chr3R 28711720 28711772 chr3R 28711827 28711880 16 103 2.0 2.5 2.2 5.0 160 chr3R 28711720 intron htt + chr3R 28711800 intron htt + chr3R 28711880 intron htt + chr3R_16_28710001 chr3R_28710001 RAL-235 2258 chr3R 28712860 28712914 chr3R 28712968 28713027 10 108 2.0 0.0 1.0 5.0 167 chr3R 28712860 intron htt + chr3R 28712944 intron htt + chr3R 28713027 intron htt + chr3R_10_28710001 chr3R_28710001 RAL-235 2259 chr3R 28742475 28742500 chr3R 28742561 28742596 9 88 4.0 3.5 3.8 1.9 121 chr3R 28742475 intron AstA-R2 - chr3R 28742536 intron AstA-R2 - chr3R 28742596 intron AstA-R2 - chr3R_9_28740001 chr3R_28740001 RAL-235 2260 chr3R 28758264 28758281 chr3R 28763901 28763918 roo 6 5637 11.5 0.5 6.0 0.9 5654 chr3R 28758264 intergenic aqrs - chr3R 28761091 intergenic not near genes chr3R 28763918 intergenic not near genes chr3R_6_28760001 chr3R_28760001 RAL-235 2261 chr3R 28758302 28758315 chr3R 28771329 28771337 Stalker4 4 13026 4.5 2.5 3.5 0.9 13035 chr3R 28758302 intergenic aqrs - chr3R 28764820 intergenic not near genes chr3R 28771337 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-235 2262 chr3R 28763901 28763915 chr3R 28771363 28771366 Stalker4 4 7459 0.0 8.5 4.2 0.8 7465 chr3R 28763901 intergenic not near genes chr3R 28767634 intergenic not near genes chr3R 28771366 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-235 2263 chr3R 28775014 28775045 chr3R 28775167 28775204 7 149 3.5 7.0 5.2 1.1 190 chr3R 28775014 intergenic not near genes chr3R 28775109 intergenic not near genes chr3R 28775204 intergenic not near genes chr3R_7_28775001 chr3R_28775001 RAL-235 2264 chr3R 21907534 21907535 chr3R 28831801 28831802 23 6924266 19.0 7.5 13.2 1.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_23_25365001 chr3R_25365001 RAL-235 2265 chr3R 28985048 28985087 chr3R 28985170 28985210 6 116 1.0 2.5 1.8 2.1 162 chr3R 28985048 intergenic not near genes chr3R 28985129 intergenic not near genes chr3R 28985210 intergenic not near genes chr3R_6_28985001 chr3R_28985001 RAL-235 2266 chr3R 21907534 21907535 chr3R 29013339 29013339 4 7105804 19.0 11.0 15.0 0.2 7105805 chr3R 21907534 intergenic CG6678 + chr3R 25460436 intron Fur1 - chr3R 29013339 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-235 2267 chr3R 29034449 29034493 chr3R 29034552 29034580 10 93 3.5 5.5 4.5 1.8 131 chr3R 29034449 intergenic Cpsf100 +,CR45044 +,beta4GalNAcTB - chr3R 29034514 intergenic Cpsf100 +,CR45044 + chr3R 29034580 5` UTR Cpsf100 + chr3R_10_29030001 chr3R_29030001 RAL-235 2268 chr3R 29070037 29070080 chr3R 29070138 29070181 17 98 5.5 5.0 5.2 2.7 144 chr3R 29070037 intron CG11873 + chr3R 29070109 intron CG11873 + chr3R 29070181 intron CG11873 + chr3R_17_29070001 chr3R_29070001 RAL-235 2269 chr3R 29079389 29079398 chr3R 29080777 29080780 NOF 4 1387 9.0 0.0 4.5 0.7 1391 chr3R 29079389 intron CG11873 + chr3R 29080084 intron CG11873 + chr3R 29080780 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-235 2270 chr3R 29180061 29180092 chr3R 29180154 29180167 6 94 2.0 3.5 2.8 1.6 106 chr3R 29180061 intron CG14509 - chr3R 29180114 intron CG14509 - chr3R 29180167 intron CG14509 - chr3R_6_29180001 chr3R_29180001 RAL-235 2271 chr3R 29183105 29183129 chr3R 29183189 29183227 5 93 5.0 3.5 4.2 1.0 122 chr3R 29183105 intron CG14509 - chr3R 29183166 intron CG14509 - chr3R 29183227 intron CG14509 - chr3R_5_29180001 chr3R_29180001 RAL-235 2272 chr3R 29213041 29213085 chr3R 29213144 29213187 19 101 6.5 5.0 5.8 2.8 146 chr3R 29213041 intergenic not near genes chr3R 29213114 intergenic not near genes chr3R 29213187 intergenic not near genes chr3R_19_29210001 chr3R_29210001 RAL-235 2273 chr3R 29237266 29237284 chr3R 29239270 29239295 7 2005 12.0 3.5 7.8 0.8 2029 chr3R 29237266 exon CG11951 - chr3R 29238280 intron CG11951 - chr3R 29239295 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-235 2274 chr3R 29264190 29264209 chr3R 29264310 29264326 7 120 0.0 5.5 2.8 1.8 136 chr3R 29264190 intergenic not near genes chr3R 29264258 intergenic not near genes chr3R 29264326 intergenic not near genes chr3R_7_29260001 chr3R_29260001 RAL-235 2275 chr3R 29319817 29319825 chr3R 29320156 29320164 jockey 5 339 1.0 5.0 3.0 1.2 347 chr3R 29319817 intergenic Cnx99A - chr3R 29319990 intergenic Cnx99A - chr3R 29320164 intergenic not near genes chr3R_5_29315001 chr3R_29315001 RAL-235 2276 chr3R 29319826 29319858 chr3R 29320152 29320161 jockey 8 331 0.5 4.0 2.2 2.5 335 chr3R 29319826 intergenic Cnx99A - chr3R 29319994 intergenic Cnx99A - chr3R 29320161 intergenic not near genes chr3R_8_29315001 chr3R_29315001 RAL-235 2277 chr3R 29335374 29335414 chr3R 29335530 29335575 6 157 3.0 6.5 4.8 1.0 201 chr3R 29335374 intergenic not near genes chr3R 29335474 intergenic not near genes chr3R 29335575 intergenic not near genes chr3R_6_29335001 chr3R_29335001 RAL-235 2278 chr3R 29356056 29356068 chr3R 29356157 29356164 4 99 3.5 9.0 6.2 0.6 108 chr3R 29356056 intergenic CR45547 - chr3R 29356110 intergenic CR45547 - chr3R 29356164 3` UTR CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-235 2279 chr3R 29365396 29365406 chr3R 29365478 29365498 5 91 4.0 5.5 4.8 0.9 102 chr3R 29365396 intergenic not near genes chr3R 29365447 intergenic not near genes chr3R 29365498 intergenic not near genes chr3R_5_29365001 chr3R_29365001 RAL-235 2280 chr3R 29432759 29432793 chr3R 29432855 29432882 5 90 3.0 1.0 2.0 1.7 123 chr3R 29432759 intron Ptp99A + chr3R 29432820 intron Ptp99A + chr3R 29432882 intron Ptp99A + chr3R_5_29430001 chr3R_29430001 RAL-235 2281 chr3R 29434353 29434402 chr3R 29434456 29434494 7 97 2.5 1.0 1.8 2.5 141 chr3R 29434353 intron Ptp99A + chr3R 29434424 intron Ptp99A + chr3R 29434494 intron Ptp99A + chr3R_7_29430001 chr3R_29430001 RAL-235 2282 chr3R 29447804 29447841 chr3R 29447930 29447966 6 118 2.5 4.5 3.5 1.3 162 chr3R 29447804 intron Ptp99A + chr3R 29447885 intron Ptp99A + chr3R 29447966 intron Ptp99A + chr3R_6_29445001 chr3R_29445001 RAL-235 2283 chr3R 29449354 29449387 chr3R 29449433 29449482 12 89 4.0 1.5 2.8 3.2 128 chr3R 29449354 intron Ptp99A + chr3R 29449418 intron Ptp99A + chr3R 29449482 intron Ptp99A + chr3R_12_29445001 chr3R_29445001 RAL-235 2284 chr3R 29474424 29474462 chr3R 29474524 29474569 9 106 4.5 11.5 8.0 1.0 145 chr3R 29474424 intron Ptp99A + chr3R 29474496 intron Ptp99A + chr3R 29474569 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 RAL-235 2285 chr3R 29539411 29539452 chr3R 29539507 29539522 9 91 2.5 0.0 1.2 4.1 111 chr3R 29539411 intergenic not near genes chr3R 29539466 intergenic not near genes chr3R 29539522 intergenic not near genes chr3R_9_29535001 chr3R_29535001 RAL-235 2286 chr3R 29581533 29581566 chr3R 29581634 29581639 6 96 1.0 0.0 0.5 4.0 106 chr3R 29581533 intergenic not near genes chr3R 29581586 intergenic not near genes chr3R 29581639 intergenic not near genes chr3R_6_29580001 chr3R_29580001 RAL-235 2287 chr3R 29606929 29606952 chr3R 29607027 29607050 4 97 8.0 6.0 7.0 0.5 121 chr3R 29606929 intron alph + chr3R 29606990 intron alph + chr3R 29607050 intron alph + chr3R_4_29605001 chr3R_29605001 RAL-235 2288 chr3R 29606953 29606965 chr3R 29607022 29607063 5 87 5.5 5.0 5.2 0.8 110 chr3R 29606953 intron alph + chr3R 29607008 intron alph + chr3R 29607063 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-235 2289 chr3R 29642511 29642535 chr3R 29642608 29642632 6 95 1.5 9.0 5.2 1.0 121 chr3R 29642511 intron Dop1R2 - chr3R 29642572 intron Dop1R2 - chr3R 29642632 intron Dop1R2 - chr3R_6_29640001 chr3R_29640001 RAL-235 2290 chr3R 29645807 29645857 chr3R 29645907 29645921 9 94 1.5 2.5 2.0 3.0 114 chr3R 29645807 intron Dop1R2 - chr3R 29645864 intron Dop1R2 - chr3R 29645921 intron Dop1R2 - chr3R_9_29645001 chr3R_29645001 RAL-235 2291 chr3R 29719382 29719430 chr3R 29719488 29719536 19 104 5.0 6.5 5.8 2.8 154 chr3R 29719382 intron CG15506 + chr3R 29719459 intron CG15506 + chr3R 29719536 intron CG15506 + chr3R_19_29715001 chr3R_29715001 RAL-235 2292 chr3R 29738249 29738284 chr3R 29739736 29739771 hobo 11 1484 5.0 6.5 5.8 1.6 1522 chr3R 29738249 intergenic CG1969 +,CG7598 + chr3R 29739010 intron CG1969 + chr3R 29739771 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-235 2293 chr3R 29754948 29754990 chr3R 29755046 29755087 7 93 0.5 2.5 1.5 2.8 139 chr3R 29754948 intergenic CR44953 -,yata + chr3R 29755018 intergenic CR44953 -,yata + chr3R 29755087 intergenic CR44953 - chr3R_7_29755001 chr3R_29755001 RAL-235 2294 chr3R 29758926 29758970 chr3R 29759014 29759068 19 87 3.0 6.5 4.8 3.3 142 chr3R 29758926 3` UTR CR44953 - chr3R 29758997 3` UTR CR44953 - chr3R 29759068 intergenic CR44953 - chr3R_19_29755001 chr3R_29755001 RAL-235 2295 chr3R 29760341 29760390 chr3R 29761562 29761611 pogo 15 1217 8.5 4.5 6.5 2.0 1270 chr3R 29760341 intergenic not near genes chr3R 29760976 intergenic not near genes chr3R 29761611 intergenic not near genes chr3R_15_29760001 chr3R_29760001 RAL-235 2296 chr3R 29773867 29773901 chr3R 29773978 29774012 6 104 4.5 0.0 2.2 1.9 145 chr3R 29773867 intron kay + chr3R 29773940 intron kay + chr3R 29774012 intron kay + chr3R_6_29770001 chr3R_29770001 RAL-235 2297 chr3R 29880998 29881038 chr3R 29881104 29881144 10 102 3.5 4.5 4.0 2.0 146 chr3R 29880998 intron CG31038 + chr3R 29881071 intron CG31038 + chr3R 29881144 intron CG31038 + chr3R_10_29880001 chr3R_29880001 RAL-235 2298 chr3R 29882004 29882017 chr3R 29891181 29891194 roo 6 9176 9.0 3.0 6.0 0.9 9190 chr3R 29882004 intron CG31038 + chr3R 29886599 intron CG31038 + chr3R 29891194 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-235 2299 chr3R 29882020 29882053 chr3R 29891180 29891224 roo 8 9169 6.0 3.0 4.5 1.5 9204 chr3R 29882020 intron CG31038 + chr3R 29886622 intron CG31038 + chr3R 29891224 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-235 2300 chr3R 29950572 29950595 chr3R 29950654 29950692 6 92 2.0 3.0 2.5 1.7 120 chr3R 29950572 intergenic TkR99D - chr3R 29950632 intergenic TkR99D - chr3R 29950692 intergenic TkR99D - chr3R_6_29950001 chr3R_29950001 RAL-235 2301 chr3R 30028211 30028235 chr3R 30028326 30028350 10 112 8.5 6.0 7.2 1.2 139 chr3R 30028211 intron Axn + chr3R 30028280 intron Axn + chr3R 30028350 intron Axn + chr3R_10_30025001 chr3R_30025001 RAL-235 2302 chr3R 30084840 30084862 chr3R 30086327 30086349 hobo 8 1486 5.5 4.0 4.8 1.4 1509 chr3R 30084840 intron sima + chr3R 30085594 intron sima + chr3R 30086349 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-235 2303 chr3R 30115223 30115262 chr3R 30115346 30115383 7 120 1.0 1.5 1.2 3.2 160 chr3R 30115223 intron sima + chr3R 30115303 intron sima + chr3R 30115383 intron sima + chr3R_7_30115001 chr3R_30115001 RAL-235 2304 chr3R 30170656 30170661 chr3R 30170782 30170787 4 125 8.5 4.5 6.5 0.5 131 chr3R 30170656 exon CG31028 - chr3R 30170722 intron CG31028 - chr3R 30170787 intron CG31028 - chr3R_4_30170001 chr3R_30170001 RAL-235 2305 chr3R 30170663 30170678 chr3R 30170781 30170802 4 122 6.0 4.0 5.0 0.7 139 chr3R 30170663 exon CG31028 - chr3R 30170732 intron CG31028 - chr3R 30170802 intron CG31028 - chr3R_4_30170001 chr3R_30170001 RAL-235 2306 chr3R 30238747 30238783 chr3R 30239942 30239957 1360 7 1189 3.0 5.5 4.2 1.3 1210 chr3R 30238747 intergenic not near genes chr3R 30239352 intergenic not near genes chr3R 30239957 intergenic not near genes chr3R_7_30235001 chr3R_30235001 RAL-235 2307 chr3R 30268403 30268434 chr3R 30268494 30268529 6 91 2.0 3.0 2.5 1.7 126 chr3R 30268403 intergenic not near genes chr3R 30268466 intergenic not near genes chr3R 30268529 intergenic not near genes chr3R_6_30265001 chr3R_30265001 RAL-235 2308 chr3R 30317310 30317359 chr3R 30324919 30324971 roo 4 7609 0.0 1.5 0.8 2.2 7661 chr3R 30317310 intron hdc + chr3R 30321140 intron hdc + chr3R 30324971 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-235 2309 chr3R 30330501 30330519 chr3R 30330571 30330594 8 86 5.5 4.0 4.8 1.4 93 chr3R 30330501 intron hdc + chr3R 30330548 intron hdc + chr3R 30330594 intron hdc + chr3R_8_30330001 chr3R_30330001 RAL-235 2310 chr3R 30375531 30375566 chr3R 30383174 30383199 412 4 7640 3.5 3.0 3.2 1.0 7668 chr3R 30375531 intergenic not near genes chr3R 30379365 intergenic not near genes chr3R 30383199 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-235 2311 chr3R 30396223 30396242 chr3R 30404483 30404523 roo 9 8278 7.0 5.0 6.0 1.3 8300 chr3R 30396223 intergenic not near genes chr3R 30400373 intergenic not near genes chr3R 30404523 5` UTR CR45570 + chr3R_9_30400001 chr3R_30400001 RAL-235 2312 chr3R 30456370 30456419 chr3R 30456469 30456519 13 96 3.0 4.5 3.8 2.7 149 chr3R 30456370 intergenic CG2224 - chr3R 30456444 3` UTR CG2224 - chr3R 30456519 3` UTR CG2224 - chr3R_13_30455001 chr3R_30455001 RAL-235 2313 chr3R 30457998 30458047 chr3R 30458093 30458095 16 92 6.0 3.5 4.8 2.8 97 chr3R 30457998 intron CG2224 - chr3R 30458046 intron CG2224 - chr3R 30458095 intron CG2224 - chr3R_16_30455001 chr3R_30455001 RAL-235 2314 chr3R 30480455 30480505 chr3R 30482943 30482993 jockey 5 2487 2.0 5.0 3.5 1.1 2538 chr3R 30480455 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482993 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-235 2315 chr3R 30498403 30498424 chr3R 30498607 30498644 6 216 0.0 5.5 2.8 1.6 241 chr3R 30498403 intron PH4alphaNE1 - chr3R 30498524 intron PH4alphaNE1 - chr3R 30498644 intron PH4alphaNE1 - chr3R_6_30495001 chr3R_30495001 RAL-235 2316 chr3R 30539788 30539838 chr3R 30539883 30539909 7 88 2.5 0.5 1.5 2.8 121 chr3R 30539788 intron tmod + chr3R 30539848 intron tmod + chr3R 30539909 intron tmod + chr3R_7_30535001 chr3R_30535001 RAL-235 2317 chr3R 30566761 30566770 chr3R 30566850 30566869 6 101 3.5 6.5 5.0 1.0 108 chr3R 30566761 intron tmod + chr3R 30566815 intron tmod + chr3R 30566869 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-235 2318 chr3R 30627588 30627617 chr3R 30627688 30627716 5 95 6.0 5.5 5.8 0.7 128 chr3R 30627588 3` UTR CG2267 - chr3R 30627652 exon CG2267 - chr3R 30627716 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-235 2319 chr3R 30627623 30627634 chr3R 30627683 30627686 4 58 4.0 5.5 4.8 0.7 63 chr3R 30627623 exon CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627686 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-235 2320 chr3R 30679501 30679551 chr3R 30686989 30687030 blood 11 7485 1.0 4.5 2.8 2.9 7529 chr3R 30679501 intergenic not near genes chr3R 30683266 intergenic not near genes chr3R 30687030 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-235 2321 chr3R 30690148 30690187 chr3R 30690251 30690291 7 100 3.5 3.5 3.5 1.6 143 chr3R 30690148 intergenic Spn100A + chr3R 30690220 intergenic Spn100A + chr3R 30690291 intergenic Spn100A + chr3R_7_30690001 chr3R_30690001 RAL-235 2322 chr3R 30700850 30700875 chr3R 30700990 30701018 5 142 2.5 1.5 2.0 1.7 168 chr3R 30700850 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701018 intergenic not near genes chr3R_5_30700001 chr3R_30700001 RAL-235 2323 chr3R 30818797 30818844 chr3R 30820382 30820411 1360 8 1580 4.0 5.5 4.8 1.4 1614 chr3R 30818797 intron cindr + chr3R 30819604 intron cindr + chr3R 30820411 intron cindr + chr3R_8_30815001 chr3R_30815001 RAL-235 2324 chr3R 30859392 30859426 chr3R 30859486 30859524 16 96 5.5 5.0 5.2 2.6 132 chr3R 30859392 intergenic not near genes chr3R 30859458 intergenic not near genes chr3R 30859524 intergenic not near genes chr3R_16_30855001 chr3R_30855001 RAL-235 2325 chr3R 31027032 31027048 chr3R 31027124 31027164 5 113 5.0 2.5 3.8 1.0 132 chr3R 31027032 intergenic not near genes chr3R 31027098 intergenic not near genes chr3R 31027164 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-235 2326 chr3R 31069637 31069661 chr3R 31069749 31069776 6 110 4.0 4.5 4.2 1.2 139 chr3R 31069637 intron Sox100B + chr3R 31069706 intron Sox100B + chr3R 31069776 intron Sox100B + chr3R_6_31065001 chr3R_31065001 RAL-235 2327 chr3R 31069662 31069675 chr3R 31069742 31069767 6 98 2.5 3.5 3.0 1.5 105 chr3R 31069662 intron Sox100B + chr3R 31069714 intron Sox100B + chr3R 31069767 intron Sox100B + chr3R_6_31065001 chr3R_31065001 RAL-235 2328 chr3R 31074215 31074249 chr3R 31081833 31081867 springer 7 7614 5.0 1.0 3.0 1.8 7652 chr3R 31074215 intron Sox100B + chr3R 31078041 intron Sox100B + chr3R 31081867 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-235 2329 chr3R 31084894 31084930 chr3R 31084990 31085026 11 93 2.5 4.5 3.5 2.4 132 chr3R 31084894 intergenic not near genes chr3R 31084960 intergenic not near genes chr3R 31085026 intergenic not near genes chr3R_11_31080001 chr3R_31080001 RAL-235 2330 chr3R 31102061 31102076 chr3R 31102137 31102143 9 83 0.0 3.0 1.5 3.6 82 chr3R 31102061 intergenic not near genes chr3R 31102102 intergenic not near genes chr3R 31102143 intergenic not near genes chr3R_9_31100001 chr3R_31100001 RAL-235 2331 chr3R 31137147 31137185 chr3R 31137238 31137285 10 89 1.5 3.0 2.2 3.1 138 chr3R 31137147 intron Gycbeta100B + chr3R 31137216 intron Gycbeta100B + chr3R 31137285 intron Gycbeta100B + chr3R_10_31135001 chr3R_31135001 RAL-235 2332 chr3R 31161411 31161439 chr3R 31161935 31161965 7 526 3.0 4.5 3.8 1.5 554 chr3R 31161411 intron,intron Gycbeta100B +,stops - chr3R 31161688 intron,intron Gycbeta100B +,stops - chr3R 31161965 intron,intron Gycbeta100B +,stops - chr3R_7_31160001 chr3R_31160001 RAL-235 2333 chr3R 31279365 31279394 chr3R 31285576 31285594 diver 4 6206 8.0 3.0 5.5 0.6 6229 chr3R 31279365 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-235 2334 chr3R 31320151 31320195 chr3R 31320262 31320301 11 106 3.0 3.0 3.0 2.8 150 chr3R 31320151 intron CG34347 + chr3R 31320226 intron CG34347 + chr3R 31320301 intron CG34347 + chr3R_11_31320001 chr3R_31320001 RAL-235 2335 chr3R 31342859 31342912 chr3R 31342992 31343040 21 121 4.0 3.0 3.5 4.7 181 chr3R 31342859 intron CG34347 + chr3R 31342950 intron CG34347 + chr3R 31343040 intron CG34347 + chr3R_21_31340001 chr3R_31340001 RAL-235 2336 chr3R 31413076 31413118 chr3R 31418294 31418310 copia 8 5203 1.5 4.0 2.8 2.1 5234 chr3R 31413076 intron Gprk2 + chr3R 31415693 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-235 2337 chr3R 31426880 31426902 chr3R 31426983 31427014 11 104 3.0 8.5 5.8 1.6 134 chr3R 31426880 intron Gprk2 + chr3R 31426947 intron Gprk2 + chr3R 31427014 intron Gprk2 + chr3R_11_31425001 chr3R_31425001 RAL-235 2338 chr3R 31435341 31435391 chr3R 31435513 31435563 19 166 4.0 5.0 4.5 3.5 222 chr3R 31435341 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435563 intron Gprk2 + chr3R_19_31435001 chr3R_31435001 RAL-235 2339 chr3R 31442249 31442296 chr3R 31442354 31442362 13 98 2.0 3.5 2.8 3.4 113 chr3R 31442249 intron Gprk2 + chr3R 31442306 intron Gprk2 + chr3R 31442362 intron Gprk2 + chr3R_13_31440001 chr3R_31440001 RAL-235 2340 chr3R 31446067 31446099 chr3R 31446176 31446212 6 110 2.5 4.0 3.2 1.4 145 chr3R 31446067 intron Gprk2 + chr3R 31446140 intron Gprk2 + chr3R 31446212 intron Gprk2 + chr3R_6_31445001 chr3R_31445001 RAL-235 2341 chr3R 31539325 31539357 chr3R 31539426 31539457 7 101 1.5 6.5 4.0 1.4 132 chr3R 31539325 intergenic not near genes chr3R 31539391 intergenic not near genes chr3R 31539457 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-235 2342 chr3R 31539851 31539880 chr3R 31539955 31539985 9 101 2.5 6.0 4.2 1.7 134 chr3R 31539851 intergenic not near genes chr3R 31539918 intergenic not near genes chr3R 31539985 intergenic not near genes chr3R_9_31535001 chr3R_31535001 RAL-235 2343 chr3R 31610100 31610148 chr3R 31610201 31610252 17 104 4.0 2.5 3.2 4.0 152 chr3R 31610100 intron CycG - chr3R 31610176 intron CycG - chr3R 31610252 intron CycG - chr3R_17_31610001 chr3R_31610001 RAL-235 2344 chr3R 31670594 31670604 chr3R 31670702 31670718 6 113 6.5 2.5 4.5 1.1 124 chr3R 31670594 intron CG1815 + chr3R 31670656 intron CG1815 + chr3R 31670718 intron CG1815 + chr3R_6_31670001 chr3R_31670001 RAL-235 2345 chr3R 31670605 31670635 chr3R 31670697 31670749 10 110 3.5 2.5 3.0 2.5 144 chr3R 31670605 intron CG1815 + chr3R 31670677 intron CG1815 + chr3R 31670749 intron CG1815 + chr3R_10_31670001 chr3R_31670001 RAL-235 2346 chr3R 31691527 31691563 chr3R 31696298 31696344 Doc 12 4781 2.0 4.5 3.2 2.9 4817 chr3R 31691527 intergenic not near genes chr3R 31693936 intergenic not near genes chr3R 31696344 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-235 2347 chr3R 31831545 31831569 chr3R 31831620 31831650 8 88 3.0 7.5 5.2 1.3 105 chr3R 31831545 intron RhoGAP100F + chr3R 31831598 intron RhoGAP100F + chr3R 31831650 intron RhoGAP100F + chr3R_8_31830001 chr3R_31830001 RAL-235 2348 chr3R 31870634 31870683 chr3R 31870745 31870775 11 105 0.5 1.0 0.8 6.1 141 chr3R 31870634 intron heph - chr3R 31870704 intron heph - chr3R 31870775 intron heph - chr3R_11_31870001 chr3R_31870001 RAL-235 2349 chr3R 31924554 31924603 chr3R 31924653 31924704 6 100 0.0 5.5 2.8 1.6 150 chr3R 31924554 intron heph - chr3R 31924629 intron heph - chr3R 31924704 intron heph - chr3R_6_31920001 chr3R_31920001 RAL-235 2350 chr3R 31925704 31925724 chr3R 31925765 31925819 4 80 2.5 2.0 2.2 1.2 115 chr3R 31925704 intron heph - chr3R 31925762 intron heph - chr3R 31925819 intron heph - chr3R_4_31925001 chr3R_31925001 RAL-235 2351 chr3R 31931175 31931214 chr3R 31931278 31931317 16 100 5.5 5.5 5.5 2.5 142 chr3R 31931175 intron heph - chr3R 31931246 intron heph - chr3R 31931317 intron heph - chr3R_16_31930001 chr3R_31930001 RAL-235 2352 chr3R 31949483 31949537 chr3R 31949587 31949643 7 96 1.0 3.0 2.0 2.3 160 chr3R 31949483 intron heph - chr3R 31949563 intron heph - chr3R 31949643 intron heph - chr3R_7_31945001 chr3R_31945001 RAL-235 2353 chr3R 31991086 31991137 chr3R 31991185 31991236 18 98 4.0 4.0 4.0 3.6 150 chr3R 31991086 intron heph - chr3R 31991161 intron heph - chr3R 31991236 intron heph - chr3R_18_31990001 chr3R_31990001 RAL-235 2354 chr3R 31997980 31998025 chr3R 32005470 32005513 blood 11 7487 1.5 2.0 1.8 3.9 7533 chr3R 31997980 intron heph - chr3R 32001746 intron heph - chr3R 32005513 intron heph - chr3R_11_32000001 chr3R_32000001 RAL-235 2355 chr3R 32022320 32022351 chr3R 32022424 32022471 8 113 4.5 4.5 4.5 1.5 151 chr3R 32022320 5` UTR CR45557 + chr3R 32022396 5` UTR CR45557 + chr3R 32022471 5` UTR CR45557 + chr3R_8_32020001 chr3R_32020001 RAL-235 2356 chr3R 32045555 32045596 chr3R 32045656 32045697 8 96 2.0 2.0 2.0 2.7 142 chr3R 32045555 3` UTR krz - chr3R 32045626 3` UTR krz - chr3R 32045697 3` UTR krz - chr3R_8_32045001 chr3R_32045001 RAL-235 2357 chr4 76488 76517 chr4 81951 81969 I-element 9 5456 2.5 4.5 3.5 2.0 5481 chr4 76488 intron pan + chr4 79228 intron pan + chr4 81969 intron pan + chr4_9_75001 chr4_75001 RAL-235 2358 chr4 319971 320020 chr4 328167 328216 Stalker2 11 8188 4.5 6.5 5.5 1.7 8245 chr4 319971 3` UTR CG32850 + chr4 324094 intron CG32850 + chr4 328216 3` UTR,3` UTR CG32850 +,PMCA - chr4_11_320001 chr4_320001 RAL-235 2359 chr4 671587 671636 chr4 680190 680209 Tirant 11 8594 2.5 5.0 3.8 2.3 8622 chr4 671587 intron CG11360 + chr4 675898 intron CG11360 + chr4 680209 intron CG11360 + chr4_11_675001 chr4_675001 RAL-235 2360 chr4 959616 959648 chr4 959808 959847 6 197 2.5 3.0 2.8 1.6 231 chr4 959616 intergenic CR44030 +,CR45201 - chr4 959732 5` UTR CR44030 + chr4 959847 5` UTR CR44030 + chr4_6_955001 chr4_955001 RAL-235 2361 chrX 295856 295880 chrX 303485 303519 412 8 7632 2.5 4.5 3.5 1.8 7663 chrX 295856 intron CG3777 + chrX 299688 intron CG3777 + chrX 303519 intron CG3777 + chrX_8_295001 chrX_295001 RAL-235 2362 chrX 318458 318500 chrX 323559 323574 flea 13 5097 6.0 5.0 5.5 2.0 5116 chrX 318458 intron,intron CG3777 +,CG32816 - chrX 321016 intron,intron CG3777 +,CG32816 - chrX 323574 intron,intron CG3777 +,CG32816 - chrX_13_320001 chrX_320001 RAL-235 2363 chrX 428422 428452 chrX 434614 434653 3S18 7 6202 4.5 4.5 4.5 1.3 6231 chrX 428422 intron CG32816 - chrX 431538 intron CG32816 - chrX 434653 intron CG32816 - chrX_7_430001 chrX_430001 RAL-235 2364 chrX 449875 449919 chrX 449991 450015 10 113 5.5 2.5 4.0 2.0 140 chrX 449875 intron CG32816 - chrX 449945 intron CG32816 - chrX 450015 intron CG32816 - chrX_10_445001 chrX_445001 RAL-235 2365 chrX 450350 450394 chrX 450444 450492 6 96 1.5 3.5 2.5 1.7 142 chrX 450350 intron CG32816 - chrX 450421 intron CG32816 - chrX 450492 intron CG32816 - chrX_6_450001 chrX_450001 RAL-235 2366 chrX 611123 611160 chrX 611228 611260 12 99 5.5 4.0 4.8 2.1 137 chrX 611123 intron CG13366 - chrX 611192 intron CG13366 - chrX 611260 intron CG13366 - chrX_12_610001 chrX_610001 RAL-235 2367 chrX 667629 667684 chrX 667733 667785 16 103 2.5 1.5 2.0 5.3 156 chrX 667629 intergenic not near genes chrX 667707 intergenic not near genes chrX 667785 intergenic not near genes chrX_16_665001 chrX_665001 RAL-235 2368 chrX 695299 695321 chrX 695374 695405 5 85 2.5 2.0 2.2 1.6 106 chrX 695299 intron sdk + chrX 695352 intron sdk + chrX 695405 intron sdk + chrX_5_695001 chrX_695001 RAL-235 2369 chrX 706773 706829 chrX 707165 707213 8 384 0.0 2.5 1.2 3.6 440 chrX 706773 intron sdk + chrX 706993 intron sdk + chrX 707213 intron sdk + chrX_8_705001 chrX_705001 RAL-235 2370 chrX 778113 778159 chrX 778218 778269 10 104 0.5 0.0 0.2 8.3 156 chrX 778113 intron fz3 + chrX 778191 intron fz3 + chrX 778269 intron fz3 + chrX_10_775001 chrX_775001 RAL-235 2371 chrX 780590 780599 chrX 780671 780689 5 91 6.0 0.5 3.2 1.2 99 chrX 780590 intron fz3 + chrX 780640 intron fz3 + chrX 780689 intron fz3 + chrX_5_780001 chrX_780001 RAL-235 2372 chrX 827588 827628 chrX 835393 835455 roo 4 7809 2.5 0.0 1.2 1.8 7867 chrX 827588 intron CG43867 - chrX 831522 intron CG43867 - chrX 835455 intron CG43867 - chrX_4_830001 chrX_830001 RAL-235 2373 chrX 906698 906732 chrX 908507 908523 S-element 8 1804 2.0 4.0 3.0 2.0 1825 chrX 906698 intron CG43867 - chrX 907610 intron CG43867 - chrX 908523 intron CG43867 - chrX_8_905001 chrX_905001 RAL-235 2374 chrX 1053120 1053120 chrX 16983076 16983076 4 15929956 9.5 9.5 9.5 0.4 15929956 chrX 1053120 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-235 2375 chrX 1253715 1253762 chrX 1253817 1253861 6 97 1.5 3.0 2.2 1.9 146 chrX 1253715 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253861 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-235 2376 chrX 1357760 1357796 chrX 1367949 1367984 Doc 6 10185 5.0 2.0 3.5 1.3 10224 chrX 1357760 intergenic png - chrX 1362872 intergenic not near genes chrX 1367984 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-235 2377 chrX 1518022 1518066 chrX 1523444 1523488 jockey 7 5419 0.5 3.0 1.8 2.5 5466 chrX 1518022 intergenic inc + chrX 1520755 intergenic not near genes chrX 1523488 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-235 2378 chrX 1930532 1930568 chrX 1938109 1938156 opus 9 7583 2.5 3.0 2.8 2.4 7624 chrX 1930532 intergenic CG11596 + chrX 1934344 intergenic not near genes chrX 1938156 3` UTR CG3857 - chrX_9_1930001 chrX_1930001 RAL-235 2379 chrX 1968283 1968374 chrX 1968477 1968525 7 181 30.0 25.5 27.8 0.2 242 chrX 1968283 intron Hr4 + chrX 1968404 intron Hr4 + chrX 1968525 intron Hr4 + chrX_7_1965001 chrX_1965001 RAL-235 2380 chrX 2399829 2399862 chrX 2408202 2408215 roo 4 8360 2.0 2.5 2.2 1.2 8386 chrX 2399829 intergenic not near genes chrX 2404022 intergenic not near genes chrX 2408215 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-235 2381 chrX 2496148 2496172 chrX 2496321 2496352 6 171 3.5 5.5 4.5 1.1 204 chrX 2496148 intron trol - chrX 2496250 intron trol - chrX 2496352 intron trol - chrX_6_2495001 chrX_2495001 RAL-235 2382 chrX 2496175 2496186 chrX 2496320 2496354 4 165 1.5 5.5 3.5 0.9 179 chrX 2496175 intron trol - chrX 2496264 intron trol - chrX 2496354 intron trol - chrX_4_2495001 chrX_2495001 RAL-235 2383 chrX 2539254 2539262 chrX 2539495 2539503 4 241 7.0 2.0 4.5 0.7 249 chrX 2539254 intron trol - chrX 2539378 intron trol - chrX 2539503 intron trol - chrX_4_2535001 chrX_2535001 RAL-235 2384 chrX 2539269 2539283 chrX 2539479 2539507 4 221 4.5 1.0 2.8 1.1 238 chrX 2539269 intron trol - chrX 2539388 intron trol - chrX 2539507 intron trol - chrX_4_2535001 chrX_2535001 RAL-235 2385 chrX 2591215 2591260 chrX 2591696 2591706 6 470 3.5 1.5 2.5 1.7 491 chrX 2591215 intron egh + chrX 2591460 intron egh + chrX 2591706 intron egh + chrX_6_2590001 chrX_2590001 RAL-235 2386 chrX 2756959 2756991 chrX 2757070 2757099 10 110 2.5 1.5 2.0 3.3 140 chrX 2756959 intron kirre + chrX 2757029 intron kirre + chrX 2757099 intron kirre + chrX_10_2755001 chrX_2755001 RAL-235 2387 chrX 2844887 2844931 chrX 2852311 2852361 mdg1 6 7424 4.0 2.5 3.2 1.4 7474 chrX 2844887 intron kirre + chrX 2848624 intron kirre + chrX 2852361 intron kirre + chrX_6_2845001 chrX_2845001 RAL-235 2388 chrX 2877025 2877074 chrX 2877147 2877191 13 116 2.5 2.0 2.2 4.1 166 chrX 2877025 intron kirre + chrX 2877108 intron kirre + chrX 2877191 intron kirre + chrX_13_2875001 chrX_2875001 RAL-235 2389 chrX 2888111 2888141 chrX 2888196 2888223 5 90 3.0 3.0 3.0 1.2 112 chrX 2888111 intron kirre + chrX 2888167 intron kirre + chrX 2888223 intron kirre + chrX_5_2885001 chrX_2885001 RAL-235 2390 chrX 3058028 3058048 chrX 3058283 3058307 pogo 5 259 4.5 4.0 4.2 1.0 279 chrX 3058028 intron kirre + chrX 3058168 intron kirre + chrX 3058307 intron kirre + chrX_5_3055001 chrX_3055001 RAL-235 2391 chrX 3208123 3208180 chrX 3208226 3208240 14 95 2.0 2.5 2.2 4.4 117 chrX 3208123 intron dnc + chrX 3208182 intron dnc + chrX 3208240 intron dnc + chrX_14_3205001 chrX_3205001 RAL-235 2392 chrX 3243616 3243657 chrX 3243726 3243767 14 108 4.5 5.5 5.0 2.3 151 chrX 3243616 intron dnc + chrX 3243692 intron dnc + chrX 3243767 intron dnc + chrX_14_3240001 chrX_3240001 RAL-235 2393 chrX 3306326 3306374 chrX 3306428 3306476 6 98 7.0 2.0 4.5 1.1 150 chrX 3306326 intron dnc + chrX 3306401 intron dnc + chrX 3306476 intron dnc + chrX_6_3305001 chrX_3305001 RAL-235 2394 chrX 3408975 3409015 chrX 3409072 3409112 14 93 0.5 2.0 1.2 6.4 137 chrX 3408975 intron,intron CR44999 +,CG12535 - chrX 3409044 intron,intron CR44999 +,CG12535 - chrX 3409112 intron,intron CR44999 +,CG12535 - chrX_14_3405001 chrX_3405001 RAL-235 2395 chrX 3415011 3415045 chrX 3421208 3421235 3S18 6 6198 2.5 1.5 2.0 2.0 6224 chrX 3415011 intron,intron CR44999 +,CG12535 - chrX 3418123 intron,intron CR44999 +,CG12535 - chrX 3421235 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-235 2396 chrX 3493073 3493109 chrX 3502252 3502284 roo 4 9178 2.5 0.5 1.5 1.6 9211 chrX 3493073 intron,intron CR44999 +,Gas8 - chrX 3497678 intron,intron CR44999 +,Gas8 - chrX 3502284 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-235 2397 chrX 3535389 3535431 chrX 3535502 3535528 6 101 1.0 4.0 2.5 1.7 139 chrX 3535389 intron CG32791 - chrX 3535458 intron CG32791 - chrX 3535528 intron CG32791 - chrX_6_3535001 chrX_3535001 RAL-235 2398 chrX 3597092 3597124 chrX 3597200 3597232 6 105 3.5 5.0 4.2 1.2 140 chrX 3597092 intron AstA-R1 + chrX 3597162 intron AstA-R1 + chrX 3597232 intron AstA-R1 + chrX_6_3595001 chrX_3595001 RAL-235 2399 chrX 3597532 3597568 chrX 3619720 3619746 roo 6 22185 5.5 1.5 3.5 1.3 22214 chrX 3597532 intron AstA-R1 + chrX 3608639 intron AstA-R1 + chrX 3619746 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-235 2400 chrX 3626132 3626144 chrX 3626233 3626249 5 103 0.0 0.0 0.0 5.0 117 chrX 3626132 intron AstA-R1 + chrX 3626190 intron AstA-R1 + chrX 3626249 intron AstA-R1 + chrX_5_3625001 chrX_3625001 RAL-235 2401 chrX 3713091 3713136 chrX 3713211 3713265 9 126 2.0 3.5 2.8 2.4 174 chrX 3713091 intron Rala - chrX 3713178 intron Rala - chrX 3713265 intron Rala - chrX_9_3710001 chrX_3710001 RAL-235 2402 chrX 3726755 3726793 chrX 3730170 3730205 NOF 5 3415 3.0 1.5 2.2 1.6 3450 chrX 3726755 intron tlk + chrX 3728480 intron tlk + chrX 3730205 intron tlk + chrX_5_3725001 chrX_3725001 RAL-235 2403 chrX 3752386 3752404 chrX 3764750 3764753 17.6 9 12362 11.0 9.0 10.0 0.8 12367 chrX 3752386 intron tlk + chrX 3758570 intron tlk + chrX 3764753 intron tlk + chrX_9_3755001 chrX_3755001 RAL-235 2404 chrX 3842336 3842351 chrX 3842574 3842579 pogo 6 235 2.5 2.5 2.5 1.7 243 chrX 3842336 intron ec + chrX 3842458 intron ec + chrX 3842579 intron ec + chrX_6_3840001 chrX_3840001 RAL-235 2405 chrX 3986848 3986880 chrX 3994501 3994530 412 10 7651 3.0 3.5 3.2 2.4 7682 chrX 3986848 intergenic not near genes chrX 3990689 intergenic not near genes chrX 3994530 intergenic not near genes chrX_10_3990001 chrX_3990001 RAL-235 2406 chrX 4047459 4047498 chrX 4047592 4047621 9 128 2.5 2.0 2.2 2.8 162 chrX 4047459 intergenic CR45482 - chrX 4047540 intergenic CR45482 - chrX 4047621 3` UTR CR45482 - chrX_9_4045001 chrX_4045001 RAL-235 2407 chrX 4048482 4048526 chrX 4048578 4048622 9 95 3.0 4.5 3.8 1.9 140 chrX 4048482 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048622 3` UTR CR45482 - chrX_9_4045001 chrX_4045001 RAL-235 2408 chrX 4101886 4101895 chrX 4101986 4101990 5 98 1.0 2.5 1.8 1.8 104 chrX 4101886 exon CG15375 + chrX 4101938 exon CG15375 + chrX 4101990 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-235 2409 chrX 4132674 4132688 chrX 4132846 4132862 4 179 4.5 6.5 5.5 0.6 188 chrX 4132674 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132862 intergenic Fas2 -,GlcAT-I + chrX_4_4130001 chrX_4130001 RAL-235 2410 chrX 4157900 4157917 chrX 4164966 4164984 297 7 7071 3.5 3.0 3.2 1.7 7084 chrX 4157900 intron Fas2 - chrX 4161442 intron Fas2 - chrX 4164984 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-235 2411 chrX 4252928 4252952 chrX 4253036 4253060 5 104 4.5 3.5 4.0 1.0 132 chrX 4252928 intergenic CG15576 - chrX 4252994 intergenic CG15576 - chrX 4253060 intergenic CG15576 - chrX_5_4250001 chrX_4250001 RAL-235 2412 chrX 4252966 4252974 chrX 4253035 4253067 4 87 2.5 3.5 3.0 1.0 101 chrX 4252966 intergenic CG15576 - chrX 4253016 intergenic CG15576 - chrX 4253067 intergenic CG15576 - chrX_4_4250001 chrX_4250001 RAL-235 2413 chrX 4361411 4361450 chrX 4361508 4361547 7 95 6.0 3.0 4.5 1.3 136 chrX 4361411 intron norpA + chrX 4361479 intron norpA + chrX 4361547 intron norpA + chrX_7_4360001 chrX_4360001 RAL-235 2414 chrX 4382365 4382383 chrX 4382465 4382483 5 98 1.5 1.0 1.2 2.3 118 chrX 4382365 3` UTR CG12688 + chrX 4382424 3` UTR CG12688 + chrX 4382483 intergenic CG12688 + chrX_5_4380001 chrX_4380001 RAL-235 2415 chrX 4589605 4589629 chrX 4589751 4589764 7 142 5.5 1.5 3.5 1.6 159 chrX 4589605 intron CR32773 - chrX 4589684 intron CR32773 - chrX 4589764 intron CR32773 - chrX_7_4585001 chrX_4585001 RAL-235 2416 chrX 4660799 4660838 chrX 4660918 4660936 5 115 4.0 0.0 2.0 1.7 137 chrX 4660799 intron CG3009 - chrX 4660868 intron CG3009 - chrX 4660936 intron CG3009 - chrX_5_4660001 chrX_4660001 RAL-235 2417 chrX 4700405 4700427 chrX 4700736 4700785 jockey 5 354 2.0 4.5 3.2 1.2 380 chrX 4700405 3` UTR ctp + chrX 4700595 3` UTR ctp + chrX 4700785 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-235 2418 chrX 4763232 4763280 chrX 4763738 4763787 Stalker4 10 502 0.0 2.5 1.2 4.5 555 chrX 4763232 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763787 intergenic not near genes chrX_10_4760001 chrX_4760001 RAL-235 2419 chrX 4792373 4792406 chrX 4792823 4792829 jockey 5 441 4.5 3.0 3.8 1.0 456 chrX 4792373 intergenic not near genes chrX 4792601 intergenic not near genes chrX 4792829 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-235 2420 chrX 4931327 4931381 chrX 4931441 4931479 12 106 55.5 58.0 56.8 0.2 152 chrX 4931327 intron CG44774 - chrX 4931403 intron CG44774 - chrX 4931479 intron CG44774 - chrX_12_4930001 chrX_4930001 RAL-235 2421 chrX 4990027 4990039 chrX 4997261 4997273 roo 5 7233 6.0 4.5 5.2 0.8 7246 chrX 4990027 intron CR44833 - chrX 4993650 intron CR44833 - chrX 4997273 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-235 2422 chrX 4990043 4990067 chrX 4997256 4997301 roo 7 7231 3.0 4.5 3.8 1.5 7258 chrX 4990043 intron CR44833 - chrX 4993672 intron CR44833 - chrX 4997301 intron CR44833 - chrX_7_4990001 chrX_4990001 RAL-235 2423 chrX 5096259 5096303 chrX 5103844 5103885 springer 6 7584 0.5 1.5 1.0 3.0 7626 chrX 5096259 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103885 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-235 2424 chrX 5329438 5329473 chrX 5329555 5329562 6 108 3.5 0.0 1.8 2.1 124 chrX 5329438 intergenic CG3309 -,XRCC1 + chrX 5329500 intergenic CG3309 -,XRCC1 + chrX 5329562 intergenic CG3309 -,XRCC1 + chrX_6_5325001 chrX_5325001 RAL-235 2425 chrX 5345398 5345421 chrX 5345529 5345552 5 131 2.0 5.5 3.8 1.0 154 chrX 5345398 intron SK + chrX 5345475 intron SK + chrX 5345552 intron SK + chrX_5_5345001 chrX_5345001 RAL-235 2426 chrX 5349269 5349309 chrX 5349356 5349402 8 90 4.5 3.5 4.0 1.6 133 chrX 5349269 intron SK + chrX 5349336 intron SK + chrX 5349402 intron SK + chrX_8_5345001 chrX_5345001 RAL-235 2427 chrX 5363626 5363660 chrX 5363726 5363752 11 99 3.0 4.0 3.5 2.4 126 chrX 5363626 intron SK + chrX 5363689 intron SK + chrX 5363752 intron SK + chrX_11_5360001 chrX_5360001 RAL-235 2428 chrX 5366289 5366337 chrX 5366437 5366460 9 142 1.5 4.0 2.8 2.4 171 chrX 5366289 intron SK + chrX 5366374 intron SK + chrX 5366460 intron SK + chrX_9_5365001 chrX_5365001 RAL-235 2429 chrX 5473573 5473585 chrX 5473669 5473681 4 95 3.5 4.0 3.8 0.8 108 chrX 5473573 intron SPR + chrX 5473627 intron SPR + chrX 5473681 intron SPR + chrX_4_5470001 chrX_5470001 RAL-235 2430 chrX 5511910 5511922 chrX 5512490 5512525 4 590 0.0 4.5 2.2 1.2 615 chrX 5511910 intergenic not near genes chrX 5512218 intergenic not near genes chrX 5512525 intergenic not near genes chrX_4_5510001 chrX_5510001 RAL-235 2431 chrX 5524823 5524855 chrX 5528702 5528731 412 7 3874 3.0 0.0 1.5 2.8 3908 chrX 5524823 intergenic snoRNA:Psi28S-3342 - chrX 5526777 intergenic not near genes chrX 5528731 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-235 2432 chrX 5883792 5883841 chrX 5884053 5884091 pogo 10 258 1.5 1.5 1.5 4.0 299 chrX 5883792 intron CR45668 - chrX 5883942 intron CR45668 - chrX 5884091 intron CR45668 - chrX_10_5880001 chrX_5880001 RAL-235 2433 chrX 5884149 5884185 chrX 5884409 5884446 pogo 7 257 3.0 4.0 3.5 1.6 297 chrX 5884149 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884446 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-235 2434 chrX 5995357 5995399 chrX 5995447 5995498 9 96 1.0 3.0 2.0 3.0 141 chrX 5995357 intergenic not near genes chrX 5995428 intergenic not near genes chrX 5995498 intergenic not near genes chrX_9_5995001 chrX_5995001 RAL-235 2435 chrX 6003274 6003312 chrX 6003375 6003413 13 98 0.5 1.0 0.8 7.2 139 chrX 6003274 intron CR44498 + chrX 6003344 intron CR44498 + chrX 6003413 intron CR44498 + chrX_13_6000001 chrX_6000001 RAL-235 2436 chrX 6118678 6118731 chrX 6118779 6118833 11 94 3.5 3.0 3.2 2.6 155 chrX 6118678 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118833 intron Ca-alpha1T - chrX_11_6115001 chrX_6115001 RAL-235 2437 chrX 6171566 6171589 chrX 6179019 6179021 Quasimodo 6 7448 7.5 3.0 5.2 1.0 7455 chrX 6171566 intron Ca-alpha1T - chrX 6175294 intron Ca-alpha1T - chrX 6179021 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-235 2438 chrX 6171596 6171613 chrX 6179014 6179066 Quasimodo 9 7443 4.5 2.0 3.2 2.1 7470 chrX 6171596 intron Ca-alpha1T - chrX 6175331 intron Ca-alpha1T - chrX 6179066 intron Ca-alpha1T - chrX_9_6175001 chrX_6175001 RAL-235 2439 chrX 6215249 6215525 chrX 6215352 6215626 7 99 3.0 11.0 7.0 0.9 377 chrX 6215249 intergenic not near genes chrX 6215438 intergenic not near genes chrX 6215626 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-235 2440 chrX 6334269 6334317 chrX 6334365 6334382 10 89 3.0 3.5 3.2 2.4 113 chrX 6334269 intergenic not near genes chrX 6334326 intergenic not near genes chrX 6334382 intergenic not near genes chrX_10_6330001 chrX_6330001 RAL-235 2441 chrX 6335222 6335243 chrX 6337730 6337773 Tirant 5 2522 0.0 4.5 2.2 1.6 2551 chrX 6335222 intergenic not near genes chrX 6336498 intergenic not near genes chrX 6337773 5` UTR CG3842 + chrX_5_6335001 chrX_6335001 RAL-235 2442 chrX 6388656 6388691 chrX 6388741 6388787 11 93 4.5 3.5 4.0 2.2 131 chrX 6388656 intergenic not near genes chrX 6388722 intergenic not near genes chrX 6388787 intergenic not near genes chrX_11_6385001 chrX_6385001 RAL-235 2443 chrX 6458885 6458930 chrX 6459011 6459055 15 116 4.5 3.0 3.8 3.1 170 chrX 6458885 intron CG42340 - chrX 6458970 intron CG42340 - chrX 6459055 intron CG42340 - chrX_15_6455001 chrX_6455001 RAL-235 2444 chrX 6562802 6562848 chrX 6571304 6571321 Tirant 11 8490 3.5 6.0 4.8 1.9 8519 chrX 6562802 intron CG34417 + chrX 6567062 intron CG34417 + chrX 6571321 intron CG34417 + chrX_11_6565001 chrX_6565001 RAL-235 2445 chrX 6605463 6605468 chrX 6608505 6608508 Burdock 5 3041 4.0 4.5 4.2 1.0 3045 chrX 6605463 intron pigs + chrX 6606986 intron pigs + chrX 6608508 intron pigs + chrX_5_6605001 chrX_6605001 RAL-235 2446 chrX 6605470 6605500 chrX 6608501 6608536 Burdock 9 3039 3.5 4.5 4.0 1.8 3066 chrX 6605470 intron pigs + chrX 6607003 intron pigs + chrX 6608536 intron pigs + chrX_9_6605001 chrX_6605001 RAL-235 2447 chrX 6618444 6618461 chrX 6618542 6618559 4 94 11.5 9.0 10.2 0.4 115 chrX 6618444 intron pigs + chrX 6618502 intron pigs + chrX 6618559 intron pigs + chrX_4_6615001 chrX_6615001 RAL-235 2448 chrX 6897592 6897703 chrX 6897684 6897826 5 116 0.5 1.0 0.8 2.8 234 chrX 6897592 intergenic not near genes chrX 6897709 intergenic not near genes chrX 6897826 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-235 2449 chrX 6901361 6901382 chrX 6901455 6901477 4 92 5.0 0.0 2.5 1.1 116 chrX 6901361 intergenic not near genes chrX 6901419 intergenic not near genes chrX 6901477 intergenic not near genes chrX_4_6900001 chrX_6900001 RAL-235 2450 chrX 6989491 6989530 chrX 6989598 6989637 5 107 3.5 6.5 5.0 0.8 146 chrX 6989491 intron ogre - chrX 6989564 intron ogre - chrX 6989637 intron ogre - chrX_5_6985001 chrX_6985001 RAL-235 2451 chrX 7023602 7023625 chrX 7030994 7031035 Tabor 8 7396 10.5 5.0 7.8 0.9 7433 chrX 7023602 intron CG12541 - chrX 7027318 intron CG12541 - chrX 7031035 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-235 2452 chrX 7125226 7125272 chrX 7134405 7134451 roo 6 9179 0.5 3.5 2.0 2.0 9225 chrX 7125226 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134451 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-235 2453 chrX 7217939 7217963 chrX 7218050 7218068 13 107 0.0 7.0 3.5 2.9 129 chrX 7217939 intron,intron CG9650 +,CR44357 - chrX 7218004 intron,intron CG9650 +,CR44357 - chrX 7218068 intron,intron CG9650 +,CR44357 - chrX_13_7215001 chrX_7215001 RAL-235 2454 chrX 7217966 7217970 chrX 7218046 7218059 4 95 0.0 5.5 2.8 1.1 93 chrX 7217966 intron,intron CG9650 +,CR44357 - chrX 7218012 intron,intron CG9650 +,CR44357 - chrX 7218059 intron,intron CG9650 +,CR44357 - chrX_4_7215001 chrX_7215001 RAL-235 2455 chrX 7347513 7347561 chrX 7347932 7347980 11 418 2.0 4.0 3.0 2.8 467 chrX 7347513 intron,intron CR44357 -,CG1677 - chrX 7347746 intron,intron CR44357 -,CG1677 - chrX 7347980 intron,intron CR44357 -,CG1677 - chrX_11_7345001 chrX_7345001 RAL-235 2456 chrX 6897324 6897345 chrX 7441661 7441738 4 544366 0.0 7.0 3.5 0.9 544414 chrX 6897324 intergenic not near genes chrX 7169531 intron,intron CG9650 +,CR44357 - chrX 7441738 intergenic not near genes chrX_4_7165001 chrX_7165001 RAL-235 2457 chrX 7702891 7702910 chrX 7703350 7703369 jockey 5 457 4.0 11.0 7.5 0.6 478 chrX 7702891 intron CHES-1-like - chrX 7703130 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-235 2458 chrX 7702914 7702930 chrX 7703342 7703389 jockey 7 450 1.5 7.5 4.5 1.3 475 chrX 7702914 intron CHES-1-like - chrX 7703152 intron CHES-1-like - chrX 7703389 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-235 2459 chrX 7832416 7832462 chrX 7832525 7832557 14 103 1.5 4.5 3.0 3.5 141 chrX 7832416 intron CG1402 + chrX 7832486 intron CG1402 + chrX 7832557 intron CG1402 + chrX_14_7830001 chrX_7830001 RAL-235 2460 chrX 8031407 8031452 chrX 8035736 8035768 Juan 4 4326 4.0 2.0 3.0 1.0 4361 chrX 8031407 intergenic not near genes chrX 8033588 intergenic not near genes chrX 8035768 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 RAL-235 2461 chrX 8085553 8085603 chrX 8085659 8085708 16 101 5.0 3.0 4.0 3.2 155 chrX 8085553 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085708 intron,5` UTR CG2256 -,CR45535 + chrX_16_8085001 chrX_8085001 RAL-235 2462 chrX 8092267 8092318 chrX 8092372 8092422 12 101 3.5 4.0 3.8 2.5 155 chrX 8092267 intron Ubc-E2H - chrX 8092344 intron Ubc-E2H - chrX 8092422 intron Ubc-E2H - chrX_12_8090001 chrX_8090001 RAL-235 2463 chrX 8364836 8364872 chrX 8365249 8365277 BS 12 414 4.0 3.0 3.5 2.7 441 chrX 8364836 intron nAChRalpha3 - chrX 8365056 intron nAChRalpha3 - chrX 8365277 intron nAChRalpha3 - chrX_12_8365001 chrX_8365001 RAL-235 2464 chrX 8421468 8421492 chrX 8421570 8421597 5 109 3.0 9.0 6.0 0.7 129 chrX 8421468 intron Trf2 + chrX 8421532 intron Trf2 + chrX 8421597 intron Trf2 + chrX_5_8420001 chrX_8420001 RAL-235 2465 chrX 8509104 8509148 chrX 8509201 8509245 4 97 0.5 4.5 2.5 1.1 141 chrX 8509104 intron CG33181 + chrX 8509174 intron CG33181 + chrX 8509245 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-235 2466 chrX 8536746 8536774 chrX 8536836 8536868 10 94 4.5 5.5 5.0 1.7 122 chrX 8536746 intron Nrg + chrX 8536807 intron Nrg + chrX 8536868 intron Nrg + chrX_10_8535001 chrX_8535001 RAL-235 2467 chrX 8743248 8743262 chrX 8743346 8743360 6 96 0.5 1.5 1.0 3.0 112 chrX 8743248 intergenic not near genes chrX 8743304 intergenic not near genes chrX 8743360 intergenic not near genes chrX_6_8740001 chrX_8740001 RAL-235 2468 chrX 8852230 8852260 chrX 8852332 8852352 6 98 3.0 0.0 1.5 2.4 122 chrX 8852230 intron CG12075 + chrX 8852291 intron CG12075 + chrX 8852352 intron CG12075 + chrX_6_8850001 chrX_8850001 RAL-235 2469 chrX 8894978 8895001 chrX 8895084 8895092 7 103 5.5 1.5 3.5 1.6 114 chrX 8894978 intron Moe - chrX 8895035 intron Moe - chrX 8895092 intron Moe - chrX_7_8895001 chrX_8895001 RAL-235 2470 chrX 8922335 8922360 chrX 8922759 8922810 jockey 14 420 1.5 3.0 2.2 4.4 475 chrX 8922335 intron rdgA + chrX 8922572 intron rdgA + chrX 8922810 intron rdgA + chrX_14_8920001 chrX_8920001 RAL-235 2471 chrX 8948743 8948781 chrX 8956271 8956311 roo 11 7527 2.5 2.5 2.5 3.1 7568 chrX 8948743 intron rdgA + chrX 8952527 intron rdgA + chrX 8956311 intron rdgA + chrX_11_8950001 chrX_8950001 RAL-235 2472 chrX 9152056 9152109 chrX 9152159 9152212 11 97 2.5 1.0 1.8 3.9 156 chrX 9152056 intergenic dalao +,His3.3B - chrX 9152134 intergenic dalao +,His3.3B - chrX 9152212 intergenic dalao +,His3.3B - chrX_11_9150001 chrX_9150001 RAL-235 2473 chrX 9273002 9273044 chrX 9273099 9273145 15 96 3.5 2.5 3.0 3.8 143 chrX 9273002 intergenic Cfp1 -,CG16892 + chrX 9273074 intergenic Cfp1 -,CG16892 + chrX 9273145 intergenic Cfp1 -,CG16892 + chrX_15_9270001 chrX_9270001 RAL-235 2474 chrX 9337928 9337968 chrX 9338033 9338079 7 102 5.0 2.0 3.5 1.6 151 chrX 9337928 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338079 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-235 2475 chrX 9387751 9387772 chrX 9387851 9387874 5 100 1.5 6.5 4.0 1.0 123 chrX 9387751 intron mgl - chrX 9387812 intron mgl - chrX 9387874 intron mgl - chrX_5_9385001 chrX_9385001 RAL-235 2476 chrX 9508122 9508147 chrX 9509660 9509685 jockey 4 1536 8.5 1.5 5.0 0.7 1563 chrX 9508122 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509685 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-235 2477 chrX 9543380 9543424 chrX 9543479 9543519 10 96 3.5 1.5 2.5 2.9 139 chrX 9543380 intron CG32700 - chrX 9543450 intron CG32700 - chrX 9543519 intron CG32700 - chrX_10_9540001 chrX_9540001 RAL-235 2478 chrX 9575795 9575808 chrX 9576120 9576142 mdg3 5 334 3.0 2.5 2.8 1.3 347 chrX 9575795 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576142 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-235 2479 chrX 9575809 9575822 chrX 9576115 9576164 mdg3 6 316 2.0 2.5 2.2 1.9 355 chrX 9575809 intron,exon CG32699 -,CG42395 - chrX 9575986 intron,intron CG32699 -,CG42395 - chrX 9576164 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-235 2480 chrX 9656879 9656927 chrX 9656994 9657012 10 102 3.0 4.5 3.8 2.1 133 chrX 9656879 intron l(1)G0232 - chrX 9656946 intron l(1)G0232 - chrX 9657012 intron l(1)G0232 - chrX_10_9655001 chrX_9655001 RAL-235 2481 chrX 9758039 9758079 chrX 9758138 9758184 4 101 2.0 0.0 1.0 2.0 145 chrX 9758039 intergenic not near genes chrX 9758112 intergenic not near genes chrX 9758184 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-235 2482 chrX 9791860 9791886 chrX 9791964 9791987 6 108 2.5 2.0 2.2 1.9 127 chrX 9791860 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9791987 intron CG32698 + chrX_6_9790001 chrX_9790001 RAL-235 2483 chrX 9923378 9923389 chrX 9923486 9923500 5 110 6.0 1.0 3.5 1.1 122 chrX 9923378 intergenic not near genes chrX 9923439 intergenic not near genes chrX 9923500 intergenic not near genes chrX_5_9920001 chrX_9920001 RAL-235 2484 chrX 10133988 10134019 chrX 10134094 10134125 5 101 3.0 1.5 2.2 1.6 137 chrX 10133988 exon,intron RhoU +,CR44894 - chrX 10134056 exon,intron RhoU +,CR44894 - chrX 10134125 intron,intron RhoU +,CR44894 - chrX_5_10130001 chrX_10130001 RAL-235 2485 chrX 10134022 10134036 chrX 10134091 10134142 5 92 2.0 1.5 1.8 1.8 120 chrX 10134022 exon,intron RhoU +,CR44894 - chrX 10134082 exon,intron RhoU +,CR44894 - chrX 10134142 intron,intron RhoU +,CR44894 - chrX_5_10130001 chrX_10130001 RAL-235 2486 chrX 10138212 10138247 chrX 10145736 10145771 412 11 7521 5.5 6.5 6.0 1.6 7559 chrX 10138212 intron,intron RhoU +,CR44894 - chrX 10141992 intron,intron RhoU +,CR44894 - chrX 10145771 intron,intron RhoU +,CR44894 - chrX_11_10140001 chrX_10140001 RAL-235 2487 chrX 10151907 10151937 chrX 10152004 10152029 4 93 2.0 7.0 4.5 0.7 122 chrX 10151907 intron CR44894 - chrX 10151968 intron CR44894 - chrX 10152029 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-235 2488 chrX 10267298 10267316 chrX 10276468 10276486 roo 8 9168 1.0 2.5 1.8 2.9 9188 chrX 10267298 3` UTR alpha-Man-I - chrX 10271892 intron alpha-Man-I - chrX 10276486 3` UTR alpha-Man-I - chrX_8_10270001 chrX_10270001 RAL-235 2489 chrX 10317536 10317579 chrX 10317634 10317662 14 96 1.0 3.5 2.2 4.4 126 chrX 10317536 intron alpha-Man-I - chrX 10317599 intron alpha-Man-I - chrX 10317662 intron alpha-Man-I - chrX_14_10315001 chrX_10315001 RAL-235 2490 chrX 10348816 10348826 chrX 10356395 10356410 springer 6 7584 3.0 7.0 5.0 1.0 7594 chrX 10348816 intergenic snoRNA:U3:9B + chrX 10352613 intergenic not near genes chrX 10356410 intergenic l(1)G0289 - chrX_6_10350001 chrX_10350001 RAL-235 2491 chrX 10435943 10435983 chrX 10436048 10436088 7 104 5.0 0.5 2.8 1.8 145 chrX 10435943 intron CG32683 - chrX 10436016 intron CG32683 - chrX 10436088 intron CG32683 - chrX_7_10435001 chrX_10435001 RAL-235 2492 chrX 10446673 10446712 chrX 10446769 10446798 7 97 1.5 3.5 2.5 2.0 125 chrX 10446673 intron CG32683 - chrX 10446736 intron CG32683 - chrX 10446798 intron CG32683 - chrX_7_10445001 chrX_10445001 RAL-235 2493 chrX 10453049 10453099 chrX 10453260 10453295 7 206 2.0 7.5 4.8 1.2 246 chrX 10453049 intron CG32683 - chrX 10453172 intron CG32683 - chrX 10453295 intron CG32683 - chrX_7_10450001 chrX_10450001 RAL-235 2494 chrX 10525047 10525076 chrX 10532130 10532167 297 6 7088 5.5 2.0 3.8 1.2 7120 chrX 10525047 intron spri - chrX 10528607 intron spri - chrX 10532167 intron spri - chrX_6_10525001 chrX_10525001 RAL-235 2495 chrX 10550314 10550345 chrX 10550412 10550443 10 97 8.0 5.5 6.8 1.3 129 chrX 10550314 intron spri - chrX 10550378 intron spri - chrX 10550443 intron spri - chrX_10_10550001 chrX_10550001 RAL-235 2496 chrX 10550347 10550360 chrX 10550410 10550458 5 90 5.5 5.5 5.5 0.8 111 chrX 10550347 intron spri - chrX 10550402 intron spri - chrX 10550458 intron spri - chrX_5_10550001 chrX_10550001 RAL-235 2497 chrX 10550837 10550874 chrX 10552324 10552341 hobo 5 1482 4.0 0.5 2.2 1.6 1504 chrX 10550837 intron spri - chrX 10551589 intron spri - chrX 10552341 intron spri - chrX_5_10550001 chrX_10550001 RAL-235 2498 chrX 10651610 10651827 chrX 10651746 10651960 22 132 2.0 4.5 3.2 5.2 350 chrX 10651610 intron X11Lbeta + chrX 10651785 intron X11Lbeta + chrX 10651960 intron X11Lbeta + chrX_22_10650001 chrX_10650001 RAL-235 2499 chrX 10686030 10686077 chrX 10691187 10691229 roo 15 5154 5.5 2.0 3.8 3.1 5199 chrX 10686030 intron X11Lbeta + chrX 10688630 intron X11Lbeta + chrX 10691229 intron X11Lbeta + chrX_15_10685001 chrX_10685001 RAL-235 2500 chrX 10773229 10773258 chrX 10773328 10773362 7 101 0.0 2.0 1.0 3.5 133 chrX 10773229 intron CG15211 + chrX 10773296 intron CG15211 + chrX 10773362 intron CG15211 + chrX_7_10770001 chrX_10770001 RAL-235 2501 chrX 10803033 10803049 chrX 10803128 10803148 5 100 4.0 5.0 4.5 0.9 115 chrX 10803033 intron Imp - chrX 10803090 intron Imp - chrX 10803148 intron Imp - chrX_5_10800001 chrX_10800001 RAL-235 2502 chrX 10933909 10933944 chrX 10934007 10934052 7 105 0.0 1.0 0.5 4.7 143 chrX 10933909 intron Myo10A + chrX 10933980 intron Myo10A + chrX 10934052 intron Myo10A + chrX_7_10930001 chrX_10930001 RAL-235 2503 chrX 11095981 11096027 chrX 11103103 11103134 HMS-Beagle 17 7118 2.5 4.0 3.2 4.0 7153 chrX 11095981 intergenic not near genes chrX 11099558 intergenic not near genes chrX 11103134 intron CG42249 + chrX_17_11095001 chrX_11095001 RAL-235 2504 chrX 11109417 11109417 chrX 12946233 12946235 19 1836817 15.5 17.0 16.2 1.1 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_19_12025001 chrX_12025001 RAL-235 2505 chrX 11166743 11166781 chrX 11166842 11166882 7 98 1.0 6.0 3.5 1.6 139 chrX 11166743 intergenic not near genes chrX 11166812 intergenic not near genes chrX 11166882 intergenic not near genes chrX_7_11165001 chrX_11165001 RAL-235 2506 chrX 11184254 11184274 chrX 11189341 11189370 flea 5 5091 2.5 2.0 2.2 1.6 5116 chrX 11184254 intergenic not near genes chrX 11186812 intergenic not near genes chrX 11189370 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-235 2507 chrX 11254147 11254202 chrX 11254278 11254308 9 126 3.5 1.0 2.2 2.8 161 chrX 11254147 intron CG44422 - chrX 11254228 intron CG44422 - chrX 11254308 intron CG44422 - chrX_9_11250001 chrX_11250001 RAL-235 2508 chrX 11312043 11312081 chrX 11319416 11319445 Stalker2 4 7366 6.5 2.5 4.5 0.7 7402 chrX 11312043 intergenic not near genes chrX 11315744 intergenic not near genes chrX 11319445 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-235 2509 chrX 11633395 11633445 chrX 11640469 11640518 297 12 7074 5.5 5.5 5.5 1.8 7123 chrX 11633395 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640518 intron Ptp10D + chrX_12_11635001 chrX_11635001 RAL-235 2510 chrX 11645095 11645133 chrX 11648283 11648323 NOF 5 3189 3.0 4.5 3.8 1.0 3228 chrX 11645095 intron Ptp10D + chrX 11646709 intron Ptp10D + chrX 11648323 intron Ptp10D + chrX_5_11645001 chrX_11645001 RAL-235 2511 chrX 11651177 11651216 chrX 11651287 11651312 7 103 5.0 2.0 3.5 1.6 135 chrX 11651177 intron Ptp10D + chrX 11651244 intron Ptp10D + chrX 11651312 intron Ptp10D + chrX_7_11650001 chrX_11650001 RAL-235 2512 chrX 11684874 11684898 chrX 11685020 11685044 8 143 1.5 0.0 0.8 4.4 170 chrX 11684874 intron bif + chrX 11684959 intron bif + chrX 11685044 intron bif + chrX_8_11680001 chrX_11680001 RAL-235 2513 chrX 11719875 11719892 chrX 11719975 11719987 4 99 5.5 5.0 5.2 0.6 112 chrX 11719875 3` UTR prtp + chrX 11719931 intergenic prtp +,Tango10 + chrX 11719987 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-235 2514 chrX 11799011 11799037 chrX 11799103 11799107 7 96 1.5 3.0 2.2 2.2 96 chrX 11799011 intron CkIIbeta + chrX 11799059 intron CkIIbeta + chrX 11799107 intron CkIIbeta + chrX_7_11795001 chrX_11795001 RAL-235 2515 chrX 11804653 11804672 chrX 11804777 11804796 11 121 5.5 0.5 3.0 2.8 143 chrX 11804653 intron Hsc70-3 - chrX 11804724 intron Hsc70-3 - chrX 11804796 intron Hsc70-3 - chrX_11_11800001 chrX_11800001 RAL-235 2516 chrX 11922352 11922383 chrX 11922505 11922533 12 152 3.0 4.5 3.8 2.5 181 chrX 11922352 exon Sclp - chrX 11922442 intron Sclp - chrX 11922533 intron Sclp - chrX_12_11920001 chrX_11920001 RAL-235 2517 chrX 12094013 12094059 chrX 12094125 12094149 5 100 1.0 2.0 1.5 2.0 136 chrX 12094013 intron,intron CR43960 +,Ten-a + chrX 12094081 intron,intron CR43960 +,Ten-a + chrX 12094149 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-235 2518 chrX 12136446 12136498 chrX 12136546 12136566 5 90 0.0 0.5 0.2 4.2 120 chrX 12136446 intron Ten-a + chrX 12136506 intron Ten-a + chrX 12136566 intron Ten-a + chrX_5_12135001 chrX_12135001 RAL-235 2519 chrX 12176731 12176764 chrX 12176822 12176859 11 93 1.5 6.0 3.8 2.3 128 chrX 12176731 intron,3` UTR Ten-a +,CG1924 - chrX 12176795 intron,3` UTR Ten-a +,CG1924 - chrX 12176859 intron,3` UTR Ten-a +,CG1924 - chrX_11_12175001 chrX_12175001 RAL-235 2520 chrX 12487145 12487167 chrX 12487217 12487254 8 88 1.0 4.0 2.5 2.3 109 chrX 12487145 intron Cpr11A + chrX 12487200 intron Cpr11A + chrX 12487254 intron Cpr11A + chrX_8_12485001 chrX_12485001 RAL-235 2521 chrX 12528846 12528869 chrX 12528942 12528965 8 94 5.0 0.5 2.8 2.1 119 chrX 12528846 intron CG43921 - chrX 12528906 intron CG43921 - chrX 12528965 intron CG43921 - chrX_8_12525001 chrX_12525001 RAL-235 2522 chrX 12917883 12917917 chrX 12917979 12918026 14 104 3.5 2.5 3.0 3.5 143 chrX 12917883 intron fne + chrX 12917954 intron fne + chrX 12918026 intron fne + chrX_14_12915001 chrX_12915001 RAL-235 2523 chrX 8810799 8810799 chrX 12946234 12946234 4 4135435 12.0 17.0 14.5 0.3 4135435 chrX 8810799 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946234 3` UTR fne + chrX_4_10875001 chrX_10875001 RAL-235 2524 chrX 12987868 12987922 chrX 12987975 12988019 8 104 2.5 3.0 2.8 2.1 151 chrX 12987868 intergenic not near genes chrX 12987944 intergenic not near genes chrX 12988019 intergenic not near genes chrX_8_12985001 chrX_12985001 RAL-235 2525 chrX 13006553 13006594 chrX 13006665 13006699 5 109 4.5 1.5 3.0 1.2 146 chrX 13006553 intron rad + chrX 13006626 intron rad + chrX 13006699 intron rad + chrX_5_13005001 chrX_13005001 RAL-235 2526 chrX 13146577 13146630 chrX 13146685 13146738 20 105 2.5 4.5 3.5 4.4 161 chrX 13146577 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146738 intron CG32645 + chrX_20_13145001 chrX_13145001 RAL-235 2527 chrX 13172351 13172376 chrX 13172433 13172466 6 89 1.5 5.5 3.5 1.3 115 chrX 13172351 exon CG34411 - chrX 13172408 intron CG34411 - chrX 13172466 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-235 2528 chrX 13269194 13269230 chrX 13269282 13269310 7 92 0.0 0.0 0.0 7.0 116 chrX 13269194 intron HDAC4 - chrX 13269252 intron HDAC4 - chrX 13269310 intron HDAC4 - chrX_7_13265001 chrX_13265001 RAL-235 2529 chrX 13374822 13374868 chrX 13374917 13374968 14 97 4.0 3.0 3.5 3.1 146 chrX 13374822 intron CG1640 + chrX 13374895 intron CG1640 + chrX 13374968 intron CG1640 + chrX_14_13370001 chrX_13370001 RAL-235 2530 chrX 13401470 13401513 chrX 13401842 13401885 jockey 6 372 4.0 5.0 4.5 1.1 415 chrX 13401470 intergenic CG1673 +,CG12725 - chrX 13401678 intergenic CG12725 -,CG1673 + chrX 13401885 3` UTR CG12725 - chrX_6_13400001 chrX_13400001 RAL-235 2531 chrX 13429478 13429487 chrX 13430632 13430646 jockey 4 1162 0.0 9.5 4.8 0.7 1168 chrX 13429478 intergenic not near genes chrX 13430062 intergenic not near genes chrX 13430646 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-235 2532 chrX 13442128 13442171 chrX 13442232 13442282 12 106 2.5 2.0 2.2 3.8 154 chrX 13442128 intergenic not near genes chrX 13442205 intergenic not near genes chrX 13442282 intergenic not near genes chrX_12_13440001 chrX_13440001 RAL-235 2533 chrX 13463629 13463676 chrX 13469226 13469273 mdg3 14 5591 5.0 5.0 5.0 2.3 5644 chrX 13463629 intron Neto + chrX 13466451 intron Neto + chrX 13469273 intron Neto + chrX_14_13465001 chrX_13465001 RAL-235 2534 chrX 13532441 13532487 chrX 13533001 13533051 8 561 1.0 3.5 2.2 2.5 610 chrX 13532441 intergenic not near genes chrX 13532746 intergenic not near genes chrX 13533051 intergenic not near genes chrX_8_13530001 chrX_13530001 RAL-235 2535 chrX 13546976 13546993 chrX 13547090 13547102 5 112 3.0 5.5 4.2 1.0 126 chrX 13546976 intergenic not near genes chrX 13547039 intergenic not near genes chrX 13547102 intergenic not near genes chrX_5_13545001 chrX_13545001 RAL-235 2536 chrX 13546994 13547018 chrX 13547086 13547132 7 108 1.5 5.0 3.2 1.7 138 chrX 13546994 intergenic not near genes chrX 13547063 intergenic not near genes chrX 13547132 intergenic not near genes chrX_7_13545001 chrX_13545001 RAL-235 2537 chrX 13875964 13875980 chrX 13876054 13876080 5 99 1.5 1.0 1.2 2.3 116 chrX 13875964 intron mamo - chrX 13876022 intron mamo - chrX 13876080 intron mamo - chrX_5_13875001 chrX_13875001 RAL-235 2538 chrX 13937965 13938002 chrX 13941256 13941291 I-element 5 3283 5.5 0.5 3.0 1.2 3326 chrX 13937965 intron mamo - chrX 13939628 intron mamo - chrX 13941291 intron mamo - chrX_5_13935001 chrX_13935001 RAL-235 2539 chrX 13057304 13057304 chrX 13966949 13966949 5 909645 13.0 8.0 10.5 0.4 909645 chrX 13057304 intron rad + chrX 13512126 intron Neto + chrX 13966949 intron mamo - chrX_5_13510001 chrX_13510001 RAL-235 2540 chrX 14105007 14105049 chrX 14114178 14114179 roo 10 9154 3.0 2.5 2.8 2.6 9172 chrX 14105007 intergenic not near genes chrX 14109593 intergenic not near genes chrX 14114179 5` UTR CR44657 + chrX_10_14105001 chrX_14105001 RAL-235 2541 chrX 14142876 14142904 chrX 14142968 14142996 6 95 2.5 1.5 2.0 2.0 120 chrX 14142876 intergenic not near genes chrX 14142936 intergenic not near genes chrX 14142996 intergenic not near genes chrX_6_14140001 chrX_14140001 RAL-235 2542 chrX 14157576 14157595 chrX 14163253 14163271 297 5 5675 7.0 4.5 5.8 0.7 5695 chrX 14157576 intergenic not near genes chrX 14160424 intergenic not near genes chrX 14163271 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-235 2543 chrX 14167391 14167438 chrX 14167506 14167544 17 114 2.0 4.5 3.2 4.0 153 chrX 14167391 intergenic not near genes chrX 14167468 intergenic not near genes chrX 14167544 intergenic not near genes chrX_17_14165001 chrX_14165001 RAL-235 2544 chrX 14209451 14209489 chrX 14209557 14209584 9 105 4.0 2.5 3.2 2.1 133 chrX 14209451 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209518 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209584 intron,intron l(1)G0007 +,l(1)G0469 - chrX_9_14205001 chrX_14205001 RAL-235 2545 chrX 14381394 14381411 chrX 14381568 14381581 4 173 5.5 0.0 2.8 1.1 187 chrX 14381394 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381488 intron dpr8 + chrX 14381581 intron dpr8 + chrX_4_14380001 chrX_14380001 RAL-235 2546 chrX 14404996 14405004 chrX 14405094 14405101 4 98 6.0 4.5 5.2 0.6 105 chrX 14404996 intron dpr8 + chrX 14405048 intron dpr8 + chrX 14405101 intron dpr8 + chrX_4_14405001 chrX_14405001 RAL-235 2547 chrX 14416293 14416308 chrX 14421080 14421090 F-element 4 4786 5.5 3.0 4.2 0.8 4797 chrX 14416293 intron dpr8 + chrX 14418692 intron dpr8 + chrX 14421090 intron dpr8 + chrX_4_14415001 chrX_14415001 RAL-235 2548 chrX 14416311 14416333 chrX 14421073 14421120 F-element 5 4780 3.0 2.0 2.5 1.4 4809 chrX 14416311 intron dpr8 + chrX 14418716 intron dpr8 + chrX 14421120 intron dpr8 + chrX_5_14415001 chrX_14415001 RAL-235 2549 chrX 14484948 14484985 chrX 14485057 14485078 4 105 0.0 2.0 1.0 2.0 130 chrX 14484948 intergenic not near genes chrX 14485013 intergenic not near genes chrX 14485078 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-235 2550 chrX 14500486 14500529 chrX 14500607 14500644 10 120 4.5 3.0 3.8 2.1 158 chrX 14500486 intergenic not near genes chrX 14500565 intergenic not near genes chrX 14500644 intergenic not near genes chrX_10_14500001 chrX_14500001 RAL-235 2551 chrX 14636475 14636493 chrX 14641934 14641944 I-element 4 5455 3.0 5.5 4.2 0.8 5469 chrX 14636475 intron NetA - chrX 14639210 intron NetA - chrX 14641944 intron NetA - chrX_4_14635001 chrX_14635001 RAL-235 2552 chrX 14767936 14767976 chrX 14768036 14768075 12 99 3.5 0.0 1.8 4.3 139 chrX 14767936 intergenic not near genes chrX 14768006 intergenic not near genes chrX 14768075 intergenic not near genes chrX_12_14765001 chrX_14765001 RAL-235 2553 chrX 14778015 14778049 chrX 14782832 14782865 Doc 9 4817 3.0 6.5 4.8 1.6 4850 chrX 14778015 intergenic CG5347 + chrX 14780440 intergenic not near genes chrX 14782865 intergenic Ag5r2 - chrX_9_14780001 chrX_14780001 RAL-235 2554 chrX 14813717 14813767 chrX 14813815 14813854 10 92 3.5 2.5 3.0 2.5 137 chrX 14813717 intron rut - chrX 14813786 intron rut - chrX 14813854 intron rut - chrX_10_14810001 chrX_14810001 RAL-235 2555 chrX 14818764 14818798 chrX 14823977 14824001 copia 5 5206 1.0 2.5 1.8 1.8 5237 chrX 14818764 intron rut - chrX 14821382 intron rut - chrX 14824001 intron rut - chrX_5_14820001 chrX_14820001 RAL-235 2556 chrX 14861924 14861960 chrX 14862118 14862154 8 201 21.0 18.0 19.5 0.4 230 chrX 14861924 intron Flo2 + chrX 14862039 intron Flo2 + chrX 14862154 intron Flo2 + chrX_8_14860001 chrX_14860001 RAL-235 2557 chrX 14883582 14883620 chrX 14883672 14883710 7 88 2.0 0.0 1.0 3.5 128 chrX 14883582 intron Flo2 + chrX 14883646 intron Flo2 + chrX 14883710 intron Flo2 + chrX_7_14880001 chrX_14880001 RAL-235 2558 chrX 14897820 14897842 chrX 14897924 14897946 6 104 1.0 11.0 6.0 0.9 126 chrX 14897820 intron Flo2 + chrX 14897883 intron Flo2 + chrX 14897946 intron Flo2 + chrX_6_14895001 chrX_14895001 RAL-235 2559 chrX 14936842 14936893 chrX 14946119 14946163 roo 11 9275 3.5 3.5 3.5 2.4 9321 chrX 14936842 intron pdgy - chrX 14941502 intron pdgy - chrX 14946163 intron pdgy - chrX_11_14940001 chrX_14940001 RAL-235 2560 chrX 14968056 14968089 chrX 14968155 14968188 5 96 0.5 6.0 3.2 1.2 132 chrX 14968056 intron eag + chrX 14968122 intron eag + chrX 14968188 intron eag + chrX_5_14965001 chrX_14965001 RAL-235 2561 chrX 14981686 14981737 chrX 14981785 14981835 9 97 2.5 0.0 1.2 4.1 149 chrX 14981686 intron eag + chrX 14981760 intron eag + chrX 14981835 intron eag + chrX_9_14980001 chrX_14980001 RAL-235 2562 chrX 15127217 15127239 chrX 15127329 15127350 10 111 7.5 7.0 7.2 1.2 133 chrX 15127217 intron drd + chrX 15127284 intron drd + chrX 15127350 intron drd + chrX_10_15125001 chrX_15125001 RAL-235 2563 chrX 15318571 15318586 chrX 15318667 15318682 5 94 2.5 9.0 5.8 0.7 111 chrX 15318571 3` UTR gce + chrX 15318626 3` UTR gce + chrX 15318682 3` UTR gce + chrX_5_15315001 chrX_15315001 RAL-235 2564 chrX 15413031 15413084 chrX 15417353 15417391 Juan 6 4315 2.5 2.5 2.5 1.7 4360 chrX 15413031 intron Cngl - chrX 15415211 intron Cngl - chrX 15417391 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-235 2565 chrX 15426168 15426198 chrX 15426284 15426314 8 115 2.0 2.5 2.2 2.5 146 chrX 15426168 intron Cngl - chrX 15426241 intron Cngl - chrX 15426314 intron Cngl - chrX_8_15425001 chrX_15425001 RAL-235 2566 chrX 15678024 15678068 chrX 15678121 15678136 7 86 2.0 8.0 5.0 1.2 112 chrX 15678024 intergenic CG12708 + chrX 15678080 intergenic CG12708 + chrX 15678136 intergenic CG12708 + chrX_7_15675001 chrX_15675001 RAL-235 2567 chrX 15681388 15681425 chrX 15681490 15681506 5 91 3.5 3.5 3.5 1.1 118 chrX 15681388 intergenic not near genes chrX 15681447 intergenic not near genes chrX 15681506 intergenic not near genes chrX_5_15680001 chrX_15680001 RAL-235 2568 chrX 15898421 15898458 chrX 15898594 15898606 8 170 4.0 4.5 4.2 1.5 185 chrX 15898421 intron shi + chrX 15898514 intron shi + chrX 15898606 intron shi + chrX_8_15895001 chrX_15895001 RAL-235 2569 chrX 16072394 16072413 chrX 16072899 16072904 7 506 3.0 1.5 2.2 2.2 510 chrX 16072394 intron Nipsnap - chrX 16072649 intron Nipsnap - chrX 16072904 intron Nipsnap - chrX_7_16070001 chrX_16070001 RAL-235 2570 chrX 16100537 16100590 chrX 16100636 16100687 4 98 4.5 2.5 3.5 0.9 150 chrX 16100537 intron,intron CG42353 -,CG42354 - chrX 16100612 intron,intron CG42353 -,CG42354 - chrX 16100687 intron,intron CG42353 -,CG42354 - chrX_4_16100001 chrX_16100001 RAL-235 2571 chrX 16172895 16172911 chrX 16173022 16173039 4 128 4.0 4.0 4.0 0.8 144 chrX 16172895 intergenic not near genes chrX 16172967 intergenic not near genes chrX 16173039 intergenic not near genes chrX_4_16170001 chrX_16170001 RAL-235 2572 chrX 16222764 16222771 chrX 16231133 16231141 roo 4 8370 9.0 3.0 6.0 0.6 8377 chrX 16222764 intergenic not near genes chrX 16226952 intergenic not near genes chrX 16231141 intergenic not near genes chrX_4_16225001 chrX_16225001 RAL-235 2573 chrX 16222773 16222809 chrX 16231131 16231179 roo 8 8364 4.5 2.5 3.5 1.8 8406 chrX 16222773 intergenic not near genes chrX 16226976 intergenic not near genes chrX 16231179 intergenic not near genes chrX_8_16225001 chrX_16225001 RAL-235 2574 chrX 16295511 16295532 chrX 16295615 16295635 6 103 8.5 0.0 4.2 1.2 124 chrX 16295511 intron CG9911 - chrX 16295573 intron CG9911 - chrX 16295635 intron CG9911 - chrX_6_16295001 chrX_16295001 RAL-235 2575 chrX 16340648 16340697 chrX 16349823 16349874 roo 5 9175 0.0 3.5 1.8 1.8 9226 chrX 16340648 intergenic Dsp1 + chrX 16345261 intergenic not near genes chrX 16349874 intergenic sl + chrX_5_16345001 chrX_16345001 RAL-235 2576 chrX 16492627 16492669 chrX 16498223 16498242 mdg3 18 5595 6.0 4.5 5.2 2.9 5615 chrX 16492627 intron para - chrX 16495434 intron para - chrX 16498242 intron para - chrX_18_16495001 chrX_16495001 RAL-235 2577 chrX 16821216 16821263 chrX 16821316 16821363 8 98 2.0 4.5 3.2 1.9 147 chrX 16821216 intron CG4829 + chrX 16821290 intron CG4829 + chrX 16821363 intron CG4829 + chrX_8_16820001 chrX_16820001 RAL-235 2578 chrX 16870068 16870097 chrX 16870161 16870200 5 101 3.0 3.0 3.0 1.2 132 chrX 16870068 intron CG13003 - chrX 16870134 intron CG13003 - chrX 16870200 intron CG13003 - chrX_5_16870001 chrX_16870001 RAL-235 2579 chrX 16880150 16880165 chrX 16880254 16880276 9 109 1.0 4.0 2.5 2.6 126 chrX 16880150 intergenic not near genes chrX 16880213 intergenic not near genes chrX 16880276 intergenic not near genes chrX_9_16880001 chrX_16880001 RAL-235 2580 chrX 16898081 16898113 chrX 16898181 16898196 5 90 3.5 1.5 2.5 1.4 115 chrX 16898081 intergenic not near genes chrX 16898138 intergenic not near genes chrX 16898196 intergenic not near genes chrX_5_16895001 chrX_16895001 RAL-235 2581 chrX 16906631 16906678 chrX 16906738 16906785 7 102 4.0 2.0 3.0 1.8 154 chrX 16906631 intron CR44754 - chrX 16906708 intron CR44754 - chrX 16906785 intron CR44754 - chrX_7_16905001 chrX_16905001 RAL-235 2582 chrX 1053117 1053123 chrX 16983076 16983076 6 15929956 10.0 9.5 9.8 0.6 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-235 2583 chrX 17011971 17011985 chrX 17012074 17012088 4 102 3.5 8.5 6.0 0.6 117 chrX 17011971 intron CG45002 - chrX 17012030 intron CG45002 - chrX 17012088 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-235 2584 chrX 17057933 17057963 chrX 17058189 17058224 pogo 5 260 2.0 4.0 3.0 1.2 291 chrX 17057933 intron CG45002 - chrX 17058078 intron CG45002 - chrX 17058224 intron CG45002 - chrX_5_17055001 chrX_17055001 RAL-235 2585 chrX 17195201 17195237 chrX 17200295 17200324 flea 8 5094 4.5 2.5 3.5 1.8 5123 chrX 17195201 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200324 3` UTR baz + chrX_8_17195001 chrX_17195001 RAL-235 2586 chrX 17205829 17205859 chrX 17205939 17205964 10 108 3.5 2.0 2.8 2.6 135 chrX 17205829 intergenic not near genes chrX 17205896 intergenic not near genes chrX 17205964 intergenic CG32564 + chrX_10_17205001 chrX_17205001 RAL-235 2587 chrX 17221811 17221856 chrX 17221917 17221962 13 102 2.5 4.5 3.5 2.9 151 chrX 17221811 intron CG5172 + chrX 17221886 intron CG5172 + chrX 17221962 intron CG5172 + chrX_13_17220001 chrX_17220001 RAL-235 2588 chrX 17303600 17303605 chrX 17303695 17303701 4 96 7.0 10.5 8.8 0.4 101 chrX 17303600 intron CG5445 + chrX 17303650 intron CG5445 + chrX 17303701 intron CG5445 + chrX_4_17300001 chrX_17300001 RAL-235 2589 chrX 17316146 17316383 chrX 17316264 17316487 13 105 5.5 3.0 4.2 2.5 341 chrX 17316146 intron B-H2 + chrX 17316316 intron B-H2 + chrX 17316487 intron B-H2 + chrX_13_17315001 chrX_17315001 RAL-235 2590 chrX 17352576 17352613 chrX 17352690 17352701 6 110 0.0 3.5 1.8 2.1 125 chrX 17352576 intergenic not near genes chrX 17352638 intergenic not near genes chrX 17352701 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-235 2591 chrX 17389621 17389663 chrX 17389729 17389767 10 104 1.0 1.0 1.0 5.0 146 chrX 17389621 intergenic not near genes chrX 17389694 intergenic not near genes chrX 17389767 intergenic not near genes chrX_10_17385001 chrX_17385001 RAL-235 2592 chrX 17427030 17427074 chrX 17427137 17427181 15 104 2.0 6.0 4.0 3.0 151 chrX 17427030 intron,intron CG12994 -,CG5613 + chrX 17427106 intron,intron CG12994 -,CG5613 + chrX 17427181 intron,intron CG12994 -,CG5613 + chrX_15_17425001 chrX_17425001 RAL-235 2593 chrX 17502358 17502367 chrX 17502453 17502461 4 94 2.5 6.0 4.2 0.8 103 chrX 17502358 intron CG43658 - chrX 17502410 intron CG43658 - chrX 17502461 intron CG43658 - chrX_4_17500001 chrX_17500001 RAL-235 2594 chrX 17586413 17586461 chrX 17586537 17586579 16 122 4.0 5.0 4.5 2.9 166 chrX 17586413 intron CG12991 + chrX 17586496 intron CG12991 + chrX 17586579 intron CG12991 + chrX_16_17585001 chrX_17585001 RAL-235 2595 chrX 17680889 17680912 chrX 17680966 17680981 5 77 3.5 2.0 2.8 1.3 92 chrX 17680889 intron chas - chrX 17680935 intron chas - chrX 17680981 intron chas - chrX_5_17680001 chrX_17680001 RAL-235 2596 chrX 17711352 17711373 chrX 17711458 17711479 6 106 5.5 3.5 4.5 1.1 127 chrX 17711352 intron CG42684 + chrX 17711416 intron CG42684 + chrX 17711479 intron CG42684 + chrX_6_17710001 chrX_17710001 RAL-235 2597 chrX 17830691 17830727 chrX 17830792 17830815 4 99 2.0 1.0 1.5 1.6 124 chrX 17830691 intron CR44691 - chrX 17830753 intron CR44691 - chrX 17830815 3` UTR CR44691 - chrX_4_17830001 chrX_17830001 RAL-235 2598 chrX 17965694 17965736 chrX 17965791 17965833 12 94 1.0 0.5 0.8 6.7 139 chrX 17965694 intron Sh - chrX 17965764 intron Sh - chrX 17965833 intron Sh - chrX_12_17965001 chrX_17965001 RAL-235 2599 chrX 18020820 18020844 chrX 18020911 18020951 9 101 1.0 3.5 2.2 2.8 131 chrX 18020820 intron Sh - chrX 18020886 intron Sh - chrX 18020951 intron Sh - chrX_9_18020001 chrX_18020001 RAL-235 2600 chrX 18126579 18126835 chrX 18126722 18126932 27 123 3.0 5.5 4.2 5.2 353 chrX 18126579 intron CG32553 - chrX 18126756 intron CG32553 - chrX 18126932 intron CG32553 - chrX_27_18125001 chrX_18125001 RAL-235 2601 chrX 18194051 18194104 chrX 18194606 18194634 BS 7 550 4.5 2.0 3.2 1.7 583 chrX 18194051 intron Frq2 + chrX 18194342 intron Frq2 + chrX 18194634 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-235 2602 chrX 18429478 18429487 chrX 18434806 18434816 Transpac 5 5329 1.5 3.0 2.2 1.6 5338 chrX 18429478 intergenic not near genes chrX 18432147 intergenic not near genes chrX 18434816 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-235 2603 chrX 18429489 18429524 chrX 18434805 18434855 Transpac 10 5328 2.5 3.0 2.8 2.6 5366 chrX 18429489 intergenic not near genes chrX 18432172 intergenic not near genes chrX 18434855 intergenic not near genes chrX_10_18430001 chrX_18430001 RAL-235 2604 chrX 18474851 18474885 chrX 18474928 18474967 6 80 3.0 2.5 2.8 1.6 116 chrX 18474851 intron CG32547 - chrX 18474909 intron CG32547 - chrX 18474967 intron CG32547 - chrX_6_18470001 chrX_18470001 RAL-235 2605 chrX 18486108 18486140 chrX 18486197 18486215 10 93 1.0 5.0 3.0 2.5 107 chrX 18486108 exon psh - chrX 18486162 intron psh - chrX 18486215 intron psh - chrX_10_18485001 chrX_18485001 RAL-235 2606 chrX 18529379 18529398 chrX 18529475 18529488 7 94 2.0 6.0 4.0 1.4 109 chrX 18529379 intron,3` UTR Bx +,CG15047 + chrX 18529434 intron,3` UTR Bx +,CG15047 + chrX 18529488 intron,3` UTR Bx +,CG15047 + chrX_7_18525001 chrX_18525001 RAL-235 2607 chrX 18558774 18558805 chrX 18558860 18558887 10 95 0.5 2.0 1.2 4.5 113 chrX 18558774 intron Bx + chrX 18558830 intron Bx + chrX 18558887 intron Bx + chrX_10_18555001 chrX_18555001 RAL-235 2608 chrX 12946235 12946235 chrX 18572525 18572526 5 5626290 17.5 14.5 16.0 0.3 5626291 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_5_15755001 chrX_15755001 RAL-235 2609 chrX 18576080 18576101 chrX 18576178 18576194 7 97 0.0 2.0 1.0 3.5 114 chrX 18576080 intergenic not near genes chrX 18576137 intergenic not near genes chrX 18576194 intergenic not near genes chrX_7_18575001 chrX_18575001 RAL-235 2610 chrX 18645005 18645044 chrX 18645110 18645162 7 110 2.0 2.0 2.0 2.3 157 chrX 18645005 intron Rip11 - chrX 18645084 intron Rip11 - chrX 18645162 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-235 2611 chrX 18774427 18774470 chrX 18774532 18774551 4 99 2.5 0.5 1.5 1.6 124 chrX 18774427 intergenic CCKLR-17D3 - chrX 18774489 intergenic CCKLR-17D3 - chrX 18774551 intergenic not near genes chrX_4_18770001 chrX_18770001 RAL-235 2612 chrX 18896501 18896532 chrX 18896629 18896641 9 128 6.0 2.5 4.2 1.7 140 chrX 18896501 3` UTR CG7349 + chrX 18896571 3` UTR CG7349 + chrX 18896641 intergenic CG7349 + chrX_9_18895001 chrX_18895001 RAL-235 2613 chrX 18957059 18957098 chrX 18965742 18965774 roo 7 8674 5.0 2.5 3.8 1.5 8715 chrX 18957059 intron CG43759 + chrX 18961416 intron CG43759 + chrX 18965774 intron CG43759 + chrX_7_18960001 chrX_18960001 RAL-235 2614 chrX 19019942 19019970 chrX 19020090 19020117 4 146 1.0 1.5 1.2 1.8 175 chrX 19019942 intron CG43759 + chrX 19020030 intron CG43759 + chrX 19020117 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-235 2615 chrX 19020480 19020622 chrX 19020600 19020720 16 108 0.5 0.0 0.2 13.3 240 chrX 19020480 intron CG43759 + chrX 19020600 intron CG43759 + chrX 19020720 intron CG43759 + chrX_16_19020001 chrX_19020001 RAL-235 2616 chrX 19060391 19060434 chrX 19065195 19065238 Doc 15 4802 2.5 1.0 1.8 5.4 4847 chrX 19060391 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065238 intron CG14190 + chrX_15_19060001 chrX_19060001 RAL-235 2617 chrX 19073666 19073698 chrX 19073773 19073804 6 107 5.0 3.0 4.0 1.2 138 chrX 19073666 intergenic not near genes chrX 19073735 intergenic not near genes chrX 19073804 intergenic not near genes chrX_6_19070001 chrX_19070001 RAL-235 2618 chrX 19080309 19080346 chrX 19080435 19080472 9 124 6.5 4.0 5.2 1.5 163 chrX 19080309 intergenic not near genes chrX 19080390 intergenic not near genes chrX 19080472 intergenic not near genes chrX_9_19080001 chrX_19080001 RAL-235 2619 chrX 19098735 19098760 chrX 19098849 19098874 8 114 0.0 2.5 1.2 3.6 139 chrX 19098735 intergenic not near genes chrX 19098804 intergenic not near genes chrX 19098874 intergenic not near genes chrX_8_19095001 chrX_19095001 RAL-235 2620 chrX 19124428 19124441 chrX 19124529 19124549 4 104 4.0 3.0 3.5 0.9 121 chrX 19124428 intergenic CG15882 - chrX 19124488 intergenic CG15882 - chrX 19124549 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-235 2621 chrX 19125672 19125713 chrX 19125821 19125857 10 145 3.5 2.5 3.0 2.5 185 chrX 19125672 intron tgy - chrX 19125764 intron tgy - chrX 19125857 intron tgy - chrX_10_19125001 chrX_19125001 RAL-235 2622 chrX 19136537 19136584 chrX 19143477 19143490 412 7 6926 2.5 0.5 1.5 2.8 6953 chrX 19136537 intergenic not near genes chrX 19140014 intergenic not near genes chrX 19143490 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-235 2623 chrX 19187504 19187541 chrX 19187595 19187627 8 95 2.0 1.5 1.8 2.9 123 chrX 19187504 intergenic CG33253 + chrX 19187566 intergenic CG33253 +,Mec2 + chrX 19187627 intergenic CG33253 +,Mec2 + chrX_8_19185001 chrX_19185001 RAL-235 2624 chrX 19356974 19357020 chrX 19358429 19358497 NOF 11 1459 3.5 0.5 2.0 3.7 1523 chrX 19356974 intron kek5 + chrX 19357736 intron kek5 + chrX 19358497 intron kek5 + chrX_11_19355001 chrX_19355001 RAL-235 2625 chrX 19380155 19380168 chrX 19380401 19380429 pogo 5 253 5.5 4.5 5.0 0.8 274 chrX 19380155 intron kek5 + chrX 19380292 intron kek5 + chrX 19380429 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-235 2626 chrX 19472123 19472153 chrX 19472703 19472726 jockey 5 578 2.0 2.0 2.0 1.7 603 chrX 19472123 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472726 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-235 2627 chrX 19500543 19500743 chrX 19500639 19500840 29 96 2.0 3.5 2.8 7.6 297 chrX 19500543 intron,intron CG14200 +,Pfrx + chrX 19500692 intron,intron CG14200 +,Pfrx + chrX 19500840 intron,intron CG14200 +,Pfrx + chrX_29_19500001 chrX_19500001 RAL-235 2628 chrX 19541409 19541446 chrX 19541509 19541546 13 97 5.0 2.0 3.5 2.9 137 chrX 19541409 intron CG32532 - chrX 19541478 intron CG32532 - chrX 19541546 intron CG32532 - chrX_13_19540001 chrX_19540001 RAL-235 2629 chrX 19542115 19542163 chrX 19542233 19542281 5 118 1.5 4.5 3.0 1.2 166 chrX 19542115 intron CG32532 - chrX 19542198 intron CG32532 - chrX 19542281 intron CG32532 - chrX_5_19540001 chrX_19540001 RAL-235 2630 chrX 19553485 19553500 chrX 19553581 19553586 6 93 1.0 13.0 7.0 0.8 101 chrX 19553485 intergenic not near genes chrX 19553536 intergenic not near genes chrX 19553586 intergenic not near genes chrX_6_19550001 chrX_19550001 RAL-235 2631 chrX 19576538 19576590 chrX 19576635 19576657 6 86 1.5 1.5 1.5 2.4 119 chrX 19576538 intron Tao - chrX 19576598 intron Tao - chrX 19576657 intron Tao - chrX_6_19575001 chrX_19575001 RAL-235 2632 chrX 19593948 19593963 chrX 19594043 19594068 6 99 4.5 3.0 3.8 1.2 120 chrX 19593948 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594068 intron CG14205 + chrX_6_19590001 chrX_19590001 RAL-235 2633 chrX 19595712 19595734 chrX 19595821 19595843 9 108 3.5 5.0 4.2 1.7 131 chrX 19595712 intergenic CG14205 + chrX 19595778 intergenic CG14205 + chrX 19595843 intergenic CG14205 + chrX_9_19595001 chrX_19595001 RAL-235 2634 chrX 19881437 19881485 chrX 19881538 19881586 11 98 3.5 5.5 4.5 2.0 149 chrX 19881437 intron Hers + chrX 19881512 intron Hers + chrX 19881586 intron Hers + chrX_11_19880001 chrX_19880001 RAL-235 2635 chrX 19983516 19983536 chrX 19983689 19983703 4 170 0.0 0.5 0.2 3.3 187 chrX 19983516 intergenic not near genes chrX 19983610 intergenic not near genes chrX 19983703 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-235 2636 chrX 20041532 20041561 chrX 20041612 20041649 11 93 2.5 3.5 3.0 2.8 117 chrX 20041532 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041649 intron Dop2R - chrX_11_20040001 chrX_20040001 RAL-235 2637 chrX 20133154 20133178 chrX 20133271 20133310 7 123 1.5 1.0 1.2 3.2 156 chrX 20133154 intergenic CG15322 + chrX 20133232 intergenic CG15322 + chrX 20133310 intergenic CG15322 + chrX_7_20130001 chrX_20130001 RAL-235 2638 chrX 20144301 20144310 chrX 20144379 20144410 5 94 0.0 3.5 1.8 1.8 109 chrX 20144301 intergenic not near genes chrX 20144356 intergenic not near genes chrX 20144410 intergenic not near genes chrX_5_20140001 chrX_20140001 RAL-235 2639 chrX 20144825 20144876 chrX 20145014 20145066 11 184 1.5 2.0 1.8 3.9 241 chrX 20144825 intergenic not near genes chrX 20144946 intergenic not near genes chrX 20145066 intergenic not near genes chrX_11_20140001 chrX_20140001 RAL-235 2640 chrX 20271511 20271522 chrX 20271617 20271624 5 107 4.5 0.0 2.2 1.6 113 chrX 20271511 intergenic not near genes chrX 20271568 intergenic not near genes chrX 20271624 intergenic not near genes chrX_5_20270001 chrX_20270001 RAL-235 2641 chrX 20279734 20279771 chrX 20279835 20279872 12 101 1.5 4.0 2.8 3.2 138 chrX 20279734 intergenic not near genes chrX 20279803 intergenic not near genes chrX 20279872 intergenic not near genes chrX_12_20275001 chrX_20275001 RAL-235 2642 chrX 20312881 20312907 chrX 20312965 20313005 13 92 4.0 2.5 3.2 3.1 124 chrX 20312881 intron CG1504 - chrX 20312943 intron CG1504 - chrX 20313005 intron CG1504 - chrX_13_20310001 chrX_20310001 RAL-235 2643 chrX 20369302 20369343 chrX 20369406 20369447 12 102 2.0 3.0 2.5 3.4 145 chrX 20369302 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369447 intergenic not near genes chrX_12_20365001 chrX_20365001 RAL-235 2644 chrX 20383773 20383809 chrX 20383892 20383915 10 118 4.0 0.0 2.0 3.3 142 chrX 20383773 intergenic not near genes chrX 20383844 intergenic not near genes chrX 20383915 intergenic not near genes chrX_10_20380001 chrX_20380001 RAL-235 2645 chrX 20384239 20384256 chrX 20384342 20384348 5 96 6.0 1.5 3.8 1.0 109 chrX 20384239 intergenic not near genes chrX 20384294 intergenic not near genes chrX 20384348 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-235 2646 chrX 20384264 20384288 chrX 20384337 20384391 7 95 2.0 1.5 1.8 2.5 127 chrX 20384264 intergenic not near genes chrX 20384328 intergenic not near genes chrX 20384391 intergenic not near genes chrX_7_20380001 chrX_20380001 RAL-235 2647 chrX 20443167 20443202 chrX 20443263 20443298 8 96 2.5 3.5 3.0 2.0 131 chrX 20443167 exon CG1695 + chrX 20443232 intron CG1695 + chrX 20443298 intron CG1695 + chrX_8_20440001 chrX_20440001 RAL-235 2648 chrX 20468003 20468029 chrX 20468106 20468133 5 105 0.0 0.0 0.0 5.0 130 chrX 20468003 intron GstT3 + chrX 20468068 intron GstT3 + chrX 20468133 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-235 2649 chrX 20476942 20476975 chrX 20477052 20477085 6 106 4.5 1.5 3.0 1.5 143 chrX 20476942 intron RhoGAP19D - chrX 20477014 intron RhoGAP19D - chrX 20477085 intron RhoGAP19D - chrX_6_20475001 chrX_20475001 RAL-235 2650 chrX 20484380 20484406 chrX 20484505 20484531 5 125 3.0 7.5 5.2 0.8 151 chrX 20484380 intron RhoGAP19D - chrX 20484456 intron RhoGAP19D - chrX 20484531 intron RhoGAP19D - chrX_5_20480001 chrX_20480001 RAL-235 2651 chrX 20528588 20528631 chrX 20528950 20528999 16 365 3.5 5.0 4.2 3.1 411 chrX 20528588 intergenic not near genes chrX 20528794 intergenic not near genes chrX 20528999 intergenic not near genes chrX_16_20525001 chrX_20525001 RAL-235 2652 chrX 20531746 20531793 chrX 20531865 20531911 13 117 0.0 6.5 3.2 3.1 165 chrX 20531746 intergenic not near genes chrX 20531828 intergenic not near genes chrX 20531911 intergenic not near genes chrX_13_20530001 chrX_20530001 RAL-235 2653 chrX 20541328 20541336 chrX 20541459 20541479 4 138 0.5 0.5 0.5 2.7 151 chrX 20541328 intron RunxB + chrX 20541404 intron RunxB + chrX 20541479 intron RunxB + chrX_4_20540001 chrX_20540001 RAL-235 2654 chrX 20583720 20583757 chrX 20583897 20583958 10 188 0.5 0.0 0.2 8.3 238 chrX 20583720 intergenic not near genes chrX 20583839 intergenic not near genes chrX 20583958 intergenic not near genes chrX_10_20580001 chrX_20580001 RAL-235 2655 chrX 20635414 20635446 chrX 20635600 20635632 6 182 0.5 3.0 1.8 2.1 218 chrX 20635414 intergenic not near genes chrX 20635523 intergenic not near genes chrX 20635632 intergenic not near genes chrX_6_20635001 chrX_20635001 RAL-235 2656 chrX 20662300 20662330 chrX 20662403 20662411 7 98 6.5 0.0 3.2 1.7 111 chrX 20662300 intron CG1835 + chrX 20662356 intron CG1835 + chrX 20662411 intron CG1835 + chrX_7_20660001 chrX_20660001 RAL-235 2657 chrX 20703911 20703956 chrX 20704007 20704051 11 91 3.5 3.0 3.2 2.6 140 chrX 20703911 intergenic not near genes chrX 20703981 intergenic not near genes chrX 20704051 intergenic not near genes chrX_11_20700001 chrX_20700001 RAL-235 2658 chrX 20710414 20710433 chrX 20710495 20710528 5 93 3.5 1.0 2.2 1.6 114 chrX 20710414 intergenic not near genes chrX 20710471 intergenic not near genes chrX 20710528 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-235 2659 chrX 20780223 20780231 chrX 20780454 20780476 4 240 2.5 4.5 3.5 0.9 253 chrX 20780223 intron,3` UTR shakB -,CG32507 - chrX 20780350 intron,3` UTR shakB -,CG32507 - chrX 20780476 intron,3` UTR shakB -,CG32507 - chrX_4_20780001 chrX_20780001 RAL-235 2660 chrX 20836704 20836756 chrX 20844326 20844378 roo 5 7621 4.0 2.5 3.2 1.2 7674 chrX 20836704 intron shakB - chrX 20840541 intron shakB - chrX 20844378 intron shakB - chrX_5_20840001 chrX_20840001 RAL-235 2661 chrX 20915037 20915043 chrX 20915228 20915234 5 191 10.0 4.0 7.0 0.6 197 chrX 20915037 intron shakB - chrX 20915136 intron shakB - chrX 20915234 intron shakB - chrX_5_20915001 chrX_20915001 RAL-235 2662 chrX 20915045 20915056 chrX 20915225 20915247 4 186 8.0 4.0 6.0 0.6 202 chrX 20915045 intron shakB - chrX 20915146 intron shakB - chrX 20915247 intron shakB - chrX_4_20915001 chrX_20915001 RAL-235 2663 chrX 20940699 20940742 chrX 20942188 20942226 hobo 9 1483 3.0 1.5 2.2 2.8 1527 chrX 20940699 intergenic not near genes chrX 20941462 intergenic not near genes chrX 20942226 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-235 2664 chrX 20947829 20947871 chrX 20947938 20947976 6 100 3.0 2.5 2.8 1.6 147 chrX 20947829 intergenic not near genes chrX 20947902 intergenic not near genes chrX 20947976 intergenic not near genes chrX_6_20945001 chrX_20945001 RAL-235 2665 chrX 20956974 20957014 chrX 20962436 20962476 I-element 6 5459 5.0 5.0 5.0 1.0 5502 chrX 20956974 intergenic not near genes chrX 20959725 intergenic not near genes chrX 20962476 intergenic Ser6 - chrX_6_20955001 chrX_20955001 RAL-235 2666 chrX 21028679 21028732 chrX 21028885 21028938 17 200 4.0 1.0 2.5 4.9 259 chrX 21028679 3` UTR CG1529 - chrX 21028808 3` UTR CG1529 - chrX 21028938 3` UTR CG1529 - chrX_17_21025001 chrX_21025001 RAL-235 2667 chrX 21042555 21042575 chrX 21045320 21045370 13 2770 17.5 20.0 18.8 0.7 2815 chrX 21042555 exon Mgstl + chrX 21043962 exon,3` UTR Mgstl +,CR44431 - chrX 21045370 intron Cbs + chrX_13_21040001 chrX_21040001 RAL-235 2668 chrX 21086125 21086159 chrX 21087161 21087208 jockey 11 1043 3.0 2.5 2.8 2.9 1083 chrX 21086125 intergenic not near genes chrX 21086666 intergenic not near genes chrX 21087208 intergenic not near genes chrX_11_21085001 chrX_21085001 RAL-235 2669 chrX 21088022 21088074 chrX 21088172 21088216 14 148 1.0 4.0 2.5 4.0 194 chrX 21088022 intergenic not near genes chrX 21088119 intergenic not near genes chrX 21088216 intergenic not near genes chrX_14_21085001 chrX_21085001 RAL-235 2670 chrX 21197110 21197133 chrX 21197209 21197232 10 96 2.0 3.0 2.5 2.9 122 chrX 21197110 intergenic not near genes chrX 21197171 intergenic not near genes chrX 21197232 intergenic not near genes chrX_10_21195001 chrX_21195001 RAL-235 2671 chrX 21268052 21268087 chrX 21268152 21268188 6 100 2.0 1.5 1.8 2.1 136 chrX 21268052 intron CG32521 - chrX 21268120 intron CG32521 - chrX 21268188 intron CG32521 - chrX_6_21265001 chrX_21265001 RAL-235 2672 chrX 21328109 21328148 chrX 21328233 21328279 8 128 4.5 3.0 3.8 1.7 170 chrX 21328109 3` UTR CG1486 + chrX 21328194 intergenic CG1486 +,tty - chrX 21328279 intergenic CG1486 +,tty - chrX_8_21325001 chrX_21325001 RAL-235 2673 chrX 21358057 21358094 chrX 21358156 21358194 7 97 2.0 4.5 3.2 1.7 137 chrX 21358057 intergenic sol +,Sep1 + chrX 21358126 intergenic Sep1 +,sol + chrX 21358194 intergenic Sep1 +,sol + chrX_7_21355001 chrX_21355001 RAL-235 2674 chrX 21388357 21388402 chrX 21388534 21388563 7 173 4.0 1.5 2.8 1.8 206 chrX 21388357 intergenic Hlc - chrX 21388460 intergenic not near genes chrX 21388563 intergenic mst + chrX_7_21385001 chrX_21385001 RAL-235 2675 chrX 21410462 21410484 chrX 21410565 21410574 4 100 3.0 0.0 1.5 1.6 112 chrX 21410462 3` UTR CR45003 - chrX 21410518 3` UTR CR45003 - chrX 21410574 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-235 2676 chrX 21419708 21419724 chrX 21419806 21419829 4 105 1.5 4.0 2.8 1.1 121 chrX 21419708 intergenic not near genes chrX 21419768 intergenic not near genes chrX 21419829 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-235 2677 chrX 21428331 21428371 chrX 21428532 21428575 5 197 1.0 3.0 2.0 1.7 244 chrX 21428331 intron CG42343 - chrX 21428453 intron CG42343 - chrX 21428575 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-235 2678 chrX 21458692 21458731 chrX 21464133 21464178 Ivk 8 5444 0.0 2.5 1.2 3.6 5486 chrX 21458692 intergenic not near genes chrX 21461435 intergenic not near genes chrX 21464178 intergenic not near genes chrX_8_21460001 chrX_21460001 RAL-235 2679 chrX 21500549 21500589 chrX 21500770 21500783 7 213 0.0 2.0 1.0 3.5 234 chrX 21500549 intron CR45082 - chrX 21500666 intron CR45082 - chrX 21500783 intron CR45082 - chrX_7_21500001 chrX_21500001 RAL-235 2680 chrX 21516992 21517017 chrX 21517075 21517116 4 88 3.5 5.5 4.5 0.7 124 chrX 21516992 intron CR45082 - chrX 21517054 intron CR45082 - chrX 21517116 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-235 2681 chrX 21565419 21565438 chrX 21565495 21565536 5 90 4.0 3.0 3.5 1.1 117 chrX 21565419 intergenic not near genes chrX 21565478 intergenic not near genes chrX 21565536 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-235 2682 chrX 21581539 21581574 chrX 21581640 21581675 7 97 1.5 0.0 0.8 3.9 136 chrX 21581539 intergenic not near genes chrX 21581607 intergenic not near genes chrX 21581675 intergenic not near genes chrX_7_21580001 chrX_21580001 RAL-235 2683 chrX 21624899 21624939 chrX 21625000 21625048 16 103 7.0 2.5 4.8 2.8 149 chrX 21624899 3` UTR DIP1 - chrX 21624974 3` UTR DIP1 - chrX 21625048 3` UTR DIP1 - chrX_16_21620001 chrX_21620001 RAL-235 2684 chrX 21668246 21668288 chrX 21668350 21668382 14 101 30.0 24.5 27.2 0.5 136 chrX 21668246 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668382 intergenic not near genes chrX_14_21665001 chrX_21665001 RAL-235 2685 chrX 22448252 22448294 chrX 22448408 22448453 9 158 2.0 3.0 2.5 2.6 201 chrX 22448252 intron CG14615 - chrX 22448352 intron CG14615 - chrX 22448453 intron CG14615 - chrX_9_22445001 chrX_22445001 RAL-235 2686 chrX 22478883 22478896 chrX 22479036 22479042 4 151 0.5 8.5 4.5 0.7 159 chrX 22478883 intron CG12576 - chrX 22478962 intron CG12576 - chrX 22479042 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-235 2687 chrX 22646511 22646539 chrX 22646632 22646649 5 116 5.5 0.0 2.8 1.3 138 chrX 22646511 intergenic not near genes chrX 22646580 intergenic not near genes chrX 22646649 intergenic not near genes chrX_5_22645001 chrX_22645001 RAL-235 2688 chrX 22677292 22677315 chrX 22677521 22677534 5 225 3.5 4.0 3.8 1.0 242 chrX 22677292 intron CR44997 + chrX 22677413 intron CR44997 + chrX 22677534 intron CR44997 + chrX_5_22675001 chrX_22675001 RAL-235 2689 chrX 22697491 22697521 chrX 22701798 22701833 Juan 7 4310 5.0 5.0 5.0 1.2 4342 chrX 22697491 intron CR44997 + chrX 22699662 intron CR44997 + chrX 22701833 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-235 2690 chrX 22764356 22764396 chrX 22764472 22764512 7 113 2.5 4.5 3.5 1.6 156 chrX 22764356 intron CR44997 + chrX 22764434 intron CR44997 + chrX 22764512 intron CR44997 + chrX_7_22760001 chrX_22760001 RAL-235 2691 chrX 22771486 22771533 chrX 22774797 22774829 297 10 3306 2.5 1.0 1.8 3.6 3343 chrX 22771486 intron CR44997 + chrX 22773158 intron CR44997 + chrX 22774829 intron CR44997 + chrX_10_22770001 chrX_22770001 RAL-235 2692 chrX 22798775 22798797 chrX 22798908 22798929 4 130 3.0 7.5 5.2 0.6 154 chrX 22798775 intergenic not near genes chrX 22798852 intergenic not near genes chrX 22798929 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-235 2693 chrX 22811982 22812003 chrX 22816775 22816795 F-element 5 4789 7.5 3.5 5.5 0.8 4813 chrX 22811982 intergenic CG12446 - chrX 22814388 intergenic not near genes chrX 22816795 intergenic not near genes chrX_5_22810001 chrX_22810001 RAL-235 2694 chrX 22824234 22824438 chrX 22824369 22824591 13 144 5.0 5.0 5.0 2.2 357 chrX 22824234 intergenic fog - chrX 22824412 3` UTR fog - chrX 22824591 3` UTR fog - chrX_13_22820001 chrX_22820001 RAL-235 2695 chrX 22967370 22967503 chrX 23154541 23154690 diver 5 187168 4.5 15.0 9.8 0.5 187320 chrX 22967370 intergenic not near genes chrX 23061030 intergenic not near genes chrX 23154690 intergenic not near genes chrX_5_23060001 chrX_23060001 RAL-235 2696 chrX 22987093 22987132 chrX 22989771 22989811 Burdock 11 2675 3.0 2.5 2.8 2.9 2718 chrX 22987093 intron,intron stnA -,stnB - chrX 22988452 intron,intron stnA -,stnB - chrX 22989811 intron,intron stnA -,stnB - chrX_11_22985001 chrX_22985001 RAL-235 2697 chrX 22996302 22996341 chrX 23003546 23003593 roo 17 7249 2.5 3.5 3.0 4.2 7291 chrX 22996302 intron,intron stnA -,stnB - chrX 22999948 intron,intron stnA -,stnB - chrX 23003593 intron,intron stnA -,stnB - chrX_17_22995001 chrX_22995001 RAL-235 2698 chrX 23036370 23036411 chrX 23037786 23037827 pogo 6 1419 1.5 2.5 2.0 2.0 1457 chrX 23036370 intron CG12061 + chrX 23037098 intron CG12061 + chrX 23037827 intron CG12061 + chrX_6_23035001 chrX_23035001 RAL-235 2699 chrY 104701 104713 chrY 104826 104836 4 124 1.0 3.5 2.2 1.2 135 chrY 104701 intron kl-5 - chrY 104768 intron kl-5 - chrY 104836 intron kl-5 - chrY_4_100001 chrY_100001 RAL-235 2700 chrY 380966 380977 chrY 381053 381079 7 92 3.0 2.5 2.8 1.8 113 chrY 380966 intergenic not near genes chrY 381022 intergenic not near genes chrY 381079 intergenic not near genes chrY_7_380001 chrY_380001 RAL-235 2701 chrY 864701 864742 chrY 864798 864838 8 95 44.5 47.5 46.0 0.2 137 chrY 864701 intergenic not near genes chrY 864770 intergenic not near genes chrY 864838 intergenic not near genes chrY_8_860001 chrY_860001 RAL-235 2702 chrY 975595 975813 chrY 975710 975923 5 151 87.5 101.5 94.5 0.1 328 chrY 975595 intergenic not near genes chrY 975759 intergenic not near genes chrY 975923 intergenic not near genes chrY_5_975001 chrY_975001 RAL-235