SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47472 chr2L 52563 52576 jockey 4 5105 5.0 2.5 3.8 0.8 5118 chr2L 47458 intron Cda5 - chr2L 50017 intron Cda5 - chr2L 52576 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-233 2 chr2L 73789 73814 chr2L 73898 73923 6 109 4.0 4.5 4.2 1.2 134 chr2L 73789 3` UTR,intron CR44987 -,galectin + chr2L 73856 intron galectin + chr2L 73923 intron galectin + chr2L_6_70001 chr2L_70001 RAL-233 3 chr2L 347890 347912 chr2L 355390 355412 blood 5 7496 2.5 1.0 1.8 1.8 7522 chr2L 347890 3` UTR Plc21C + chr2L 351651 intron Plc21C + chr2L 355412 3` UTR Plc21C + chr2L_5_350001 chr2L_350001 RAL-233 4 chr2L 630322 630334 chr2L 630412 630424 5 91 1.5 3.5 2.5 1.4 102 chr2L 630322 intergenic not near genes chr2L 630373 intergenic not near genes chr2L 630424 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-233 5 chr2L 686917 686939 chr2L 695957 695978 roo 5 9038 2.0 1.0 1.5 2.0 9061 chr2L 686917 intron ds - chr2L 691448 intron ds - chr2L 695978 intron ds - chr2L_5_690001 chr2L_690001 RAL-233 6 chr2L 748947 748975 chr2L 749023 749049 6 72 5.0 5.0 5.0 1.0 102 chr2L 748947 intergenic not near genes chr2L 748998 intergenic not near genes chr2L 749049 intergenic not near genes chr2L_6_745001 chr2L_745001 RAL-233 7 chr2L 781062 781098 chr2L 781139 781185 6 80 3.0 0.0 1.5 2.4 123 chr2L 781062 5` UTR Gr21a + chr2L 781124 5` UTR Gr21a + chr2L 781185 5` UTR Gr21a + chr2L_6_780001 chr2L_780001 RAL-233 8 chr2L 976889 976908 chr2L 984524 984544 roo 6 7635 2.5 0.0 1.2 2.7 7655 chr2L 976889 intergenic not near genes chr2L 980716 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-233 9 chr2L 1220129 1220158 chr2L 1227595 1227624 blood 11 7465 2.0 0.0 1.0 5.5 7495 chr2L 1220129 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227624 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-233 10 chr2L 1261236 1261254 chr2L 1261315 1261318 4 76 0.0 2.0 1.0 2.0 82 chr2L 1261236 intron robo3 + chr2L 1261277 intron robo3 + chr2L 1261318 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-233 11 chr2L 1300735 1300767 chr2L 1300825 1300857 5 90 1.0 0.0 0.5 3.3 122 chr2L 1300735 intergenic not near genes chr2L 1300796 intergenic not near genes chr2L 1300857 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-233 12 chr2L 1379014 1379042 chr2L 1379111 1379138 6 97 2.5 1.0 1.8 2.1 124 chr2L 1379014 intergenic not near genes chr2L 1379076 intergenic not near genes chr2L 1379138 intergenic not near genes chr2L_6_1375001 chr2L_1375001 RAL-233 13 chr2L 1410711 1410735 chr2L 1410795 1410823 8 86 2.0 4.0 3.0 2.0 112 chr2L 1410711 intron lea - chr2L 1410767 intron lea - chr2L 1410823 intron lea - chr2L_8_1410001 chr2L_1410001 RAL-233 14 chr2L 1556989 1557022 chr2L 1557082 1557115 7 93 2.0 1.0 1.5 2.8 126 chr2L 1556989 intron haf + chr2L 1557052 intron haf + chr2L 1557115 intron haf + chr2L_7_1555001 chr2L_1555001 RAL-233 15 chr2L 1570684 1570713 chr2L 1573556 1573585 F-element 6 2872 1.5 0.5 1.0 3.0 2901 chr2L 1570684 intron haf + chr2L 1572134 intron haf + chr2L 1573585 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-233 16 chr2L 1635416 1635432 chr2L 1635552 1635568 4 136 0.0 3.5 1.8 1.4 152 chr2L 1635416 intergenic not near genes chr2L 1635492 intergenic not near genes chr2L 1635568 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-233 17 chr2L 1711355 1711387 chr2L 1711679 1711711 mdg3 7 322 2.5 3.5 3.0 1.8 356 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-233 18 chr2L 1838580 1838589 chr2L 1838683 1838694 4 104 3.0 0.5 1.8 1.4 114 chr2L 1838580 intron wry + chr2L 1838637 intron wry + chr2L 1838694 intron wry + chr2L_4_1835001 chr2L_1835001 RAL-233 19 chr2L 1849343 1849356 chr2L 1849433 1849447 5 91 1.0 0.0 0.5 3.3 104 chr2L 1849343 intron wry + chr2L 1849395 intron wry + chr2L 1849447 intron wry + chr2L_5_1845001 chr2L_1845001 RAL-233 20 chr2L 1925492 1925500 chr2L 1925569 1925576 4 77 2.0 2.0 2.0 1.3 84 chr2L 1925492 intron CG7337 + chr2L 1925534 intron CG7337 + chr2L 1925576 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-233 21 chr2L 1948623 1948630 chr2L 1948730 1948737 4 107 0.0 0.0 0.0 4.0 114 chr2L 1948623 intergenic not near genes chr2L 1948680 intergenic not near genes chr2L 1948737 intergenic not near genes chr2L_4_1945001 chr2L_1945001 RAL-233 22 chr2L 1958754 1958768 chr2L 1958831 1958845 7 76 4.5 4.0 4.2 1.3 91 chr2L 1958754 intron erm - chr2L 1958800 intron erm - chr2L 1958845 intron erm - chr2L_7_1955001 chr2L_1955001 RAL-233 23 chr2L 1958770 1958783 chr2L 1958827 1958855 4 71 1.5 2.5 2.0 1.3 85 chr2L 1958770 intron erm - chr2L 1958812 intron erm - chr2L 1958855 intron erm - chr2L_4_1955001 chr2L_1955001 RAL-233 24 chr2L 2100389 2100406 chr2L 2109539 2109543 roo 7 9147 1.5 2.5 2.0 2.3 9154 chr2L 2100389 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109543 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-233 25 chr2L 2112119 2112131 chr2L 2119776 2119793 opus 5 7660 2.0 4.0 3.0 1.2 7674 chr2L 2112119 intergenic not near genes chr2L 2115956 intergenic not near genes chr2L 2119793 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-233 26 chr2L 2205023 2205043 chr2L 2205395 2205415 11 372 3.5 1.5 2.5 3.1 392 chr2L 2205023 exon CG31668 - chr2L 2205219 intron CG31668 - chr2L 2205415 exon CG31668 - chr2L_11_2205001 chr2L_2205001 RAL-233 27 chr2L 2207668 2207696 chr2L 2207749 2207777 10 78 3.0 0.5 1.8 3.6 109 chr2L 2207668 exon CG33124 - chr2L 2207722 exon CG33124 - chr2L 2207777 exon CG33124 - chr2L_10_2205001 chr2L_2205001 RAL-233 28 chr2L 2261078 2261105 chr2L 2261294 2261323 5 217 2.0 2.0 2.0 1.7 245 chr2L 2261078 intergenic not near genes chr2L 2261200 intergenic not near genes chr2L 2261323 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-233 29 chr2L 2311071 2311091 chr2L 2311167 2311187 6 96 1.5 0.0 0.8 3.3 116 chr2L 2311071 intron CG9967 - chr2L 2311129 intron CG9967 - chr2L 2311187 intron CG9967 - chr2L_6_2310001 chr2L_2310001 RAL-233 30 chr2L 2330873 2330890 chr2L 2330962 2330979 6 88 0.5 2.5 1.5 2.4 106 chr2L 2330873 intron,intron CG9967 -,eys + chr2L 2330926 intron,intron CG9967 -,eys + chr2L 2330979 intron,intron CG9967 -,eys + chr2L_6_2330001 chr2L_2330001 RAL-233 31 chr2L 2552751 2552771 chr2L 2552831 2552851 11 80 0.5 1.5 1.0 5.5 100 chr2L 2552751 exon CG3515 - chr2L 2552801 5` UTR CG3515 - chr2L 2552851 intergenic CG3515 - chr2L_11_2550001 chr2L_2550001 RAL-233 32 chr2L 2639151 2639170 chr2L 2639227 2639246 4 76 1.5 1.0 1.2 1.8 95 chr2L 2639151 intergenic not near genes chr2L 2639198 intergenic not near genes chr2L 2639246 intergenic not near genes chr2L_4_2635001 chr2L_2635001 RAL-233 33 chr2L 2645582 2645599 chr2L 2645691 2645726 4 122 2.5 3.0 2.8 1.1 144 chr2L 2645582 intergenic CR43852 + chr2L 2645654 intergenic CR43852 + chr2L 2645726 intergenic CR43852 + chr2L_4_2645001 chr2L_2645001 RAL-233 34 chr2L 2667635 2667658 chr2L 2667703 2667737 4 76 1.0 1.5 1.2 1.8 102 chr2L 2667635 intergenic not near genes chr2L 2667686 intergenic not near genes chr2L 2667737 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-233 35 chr2L 2734191 2734218 chr2L 2734261 2734290 4 74 0.0 1.0 0.5 2.7 99 chr2L 2734191 intron CG31689 + chr2L 2734240 intron CG31689 + chr2L 2734290 intron CG31689 + chr2L_4_2730001 chr2L_2730001 RAL-233 36 chr2L 2782834 2782852 chr2L 2782911 2782927 8 74 4.0 0.5 2.2 2.5 93 chr2L 2782834 3` UTR Syt1 - chr2L 2782880 intron Syt1 - chr2L 2782927 intron Syt1 - chr2L_8_2780001 chr2L_2780001 RAL-233 37 chr2L 2975640 2975671 chr2L 2978945 2978979 19 3309 31.5 42.0 36.8 0.5 3339 chr2L 2975640 exon CG9641 - chr2L 2977310 exon CG3165 + chr2L 2978979 exon CG9643 - chr2L_19_2975001 chr2L_2975001 RAL-233 38 chr2L 3001604 3001632 chr2L 3001684 3001700 6 79 0.5 1.5 1.0 3.0 96 chr2L 3001604 intron CG17265 + chr2L 3001652 intron CG17265 + chr2L 3001700 intron CG17265 + chr2L_6_3000001 chr2L_3000001 RAL-233 39 chr2L 3007736 3007751 chr2L 3008065 3008077 5 328 2.0 1.5 1.8 1.8 341 chr2L 3007736 intron CG17265 + chr2L 3007906 intron CG17265 + chr2L 3008077 intron CG17265 + chr2L_5_3005001 chr2L_3005001 RAL-233 40 chr2L 3073011 3073032 chr2L 3078234 3078255 copia 7 5223 0.0 1.5 0.8 3.9 5244 chr2L 3073011 intron toc - chr2L 3075633 intron toc - chr2L 3078255 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-233 41 chr2L 3108873 3108899 chr2L 3108950 3108974 10 75 2.0 2.5 2.2 3.1 101 chr2L 3108873 intron toc - chr2L 3108924 intron toc - chr2L 3108974 intron toc - chr2L_10_3105001 chr2L_3105001 RAL-233 42 chr2L 3171183 3171213 chr2L 3171487 3171517 4 304 1.5 0.0 0.8 2.2 334 chr2L 3171183 intergenic CG44002 - chr2L 3171350 intergenic CG44002 - chr2L 3171517 intergenic CG44002 - chr2L_4_3170001 chr2L_3170001 RAL-233 43 chr2L 3192217 3192227 chr2L 3192326 3192338 4 110 2.5 6.5 4.5 0.7 121 chr2L 3192217 exon CG34393 - chr2L 3192278 intron CG34393 - chr2L 3192338 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-233 44 chr2L 3251500 3251526 chr2L 3259065 3259091 springer 8 7565 1.5 0.5 1.0 4.0 7591 chr2L 3251500 intergenic not near genes chr2L 3255296 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-233 45 chr2L 3271165 3271177 chr2L 3271273 3271299 5 116 0.0 3.0 1.5 2.0 134 chr2L 3271165 exon CG3347 + chr2L 3271232 exon CG3347 + chr2L 3271299 exon CG3347 + chr2L_5_3270001 chr2L_3270001 RAL-233 46 chr2L 3291236 3291263 chr2L 3291316 3291343 5 80 2.0 1.5 1.8 1.8 107 chr2L 3291236 intergenic CG9664 - chr2L 3291290 3` UTR CG9664 - chr2L 3291343 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-233 47 chr2L 3393528 3393818 chr2L 3393605 3393897 13 78 3.0 1.5 2.2 4.1 369 chr2L 3393528 intergenic not near genes chr2L 3393712 intergenic not near genes chr2L 3393897 intergenic not near genes chr2L_13_3390001 chr2L_3390001 RAL-233 48 chr2L 3398591 3398619 chr2L 3398671 3398700 4 78 1.0 1.5 1.2 1.8 109 chr2L 3398591 3` UTR CG34175 + chr2L 3398646 3` UTR CG34175 + chr2L 3398700 intergenic CG34175 + chr2L_4_3395001 chr2L_3395001 RAL-233 49 chr2L 3649790 3649820 chr2L 3654993 3655023 copia 7 5203 0.5 2.5 1.5 2.8 5233 chr2L 3649790 intron for - chr2L 3652406 intron for - chr2L 3655023 intron for - chr2L_7_3650001 chr2L_3650001 RAL-233 50 chr2L 3798062 3798082 chr2L 3803203 3803224 5 5141 32.0 11.5 21.8 0.2 5162 chr2L 3798062 exon CG3921 + chr2L 3800643 exon CG3921 + chr2L 3803224 intergenic Reph +,CG3921 + chr2L_5_3800001 chr2L_3800001 RAL-233 51 chr2L 3897998 3898270 chr2L 3898185 3898354 4 162 4.5 5.5 5.0 0.7 356 chr2L 3897998 intron capu - chr2L 3898176 intron capu - chr2L 3898354 intron capu - chr2L_4_3895001 chr2L_3895001 RAL-233 52 chr2L 3985968 3986000 chr2L 3986046 3986078 6 78 0.5 0.0 0.2 5.0 110 chr2L 3985968 intron fred - chr2L 3986023 intron fred - chr2L 3986078 intron fred - chr2L_6_3985001 chr2L_3985001 RAL-233 53 chr2L 4060165 4060200 chr2L 4060241 4060273 4 75 0.0 0.0 0.0 4.0 108 chr2L 4060165 intron ed + chr2L 4060219 intron ed + chr2L 4060273 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-233 54 chr2L 4166391 4166410 chr2L 4166470 4166493 5 82 2.0 2.5 2.2 1.6 102 chr2L 4166391 intergenic Or24a - chr2L 4166442 intergenic Or24a - chr2L 4166493 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-233 55 chr2L 4229615 4229640 chr2L 4229718 4229730 4 97 0.0 4.5 2.2 1.2 115 chr2L 4229615 intergenic CR44608 + chr2L 4229672 intergenic CR44608 + chr2L 4229730 intergenic CR44608 + chr2L_4_4225001 chr2L_4225001 RAL-233 56 chr2L 4317880 4317910 chr2L 4317958 4317988 8 75 1.5 5.0 3.2 1.9 108 chr2L 4317880 intron tutl + chr2L 4317934 intron tutl + chr2L 4317988 intron tutl + chr2L_8_4315001 chr2L_4315001 RAL-233 57 chr2L 4340713 4340743 chr2L 4340799 4340826 7 85 2.0 3.5 2.8 1.8 113 chr2L 4340713 intron Atet + chr2L 4340770 intron Atet + chr2L 4340826 intron Atet + chr2L_7_4340001 chr2L_4340001 RAL-233 58 chr2L 4439004 4439010 chr2L 4439088 4439096 4 84 3.5 4.0 3.8 0.8 92 chr2L 4439004 intron CG15431 - chr2L 4439050 intron CG15431 - chr2L 4439096 intron CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-233 59 chr2L 4439011 4439036 chr2L 4439087 4439121 5 84 2.0 4.0 3.0 1.2 110 chr2L 4439011 intron CG15431 - chr2L 4439066 intron CG15431 - chr2L 4439121 5` UTR CG15431 - chr2L_5_4435001 chr2L_4435001 RAL-233 60 chr2L 4562892 4562899 chr2L 4562984 4562991 4 92 1.0 0.0 0.5 2.7 99 chr2L 4562892 intron dp - chr2L 4562942 intron dp - chr2L 4562991 intron dp - chr2L_4_4560001 chr2L_4560001 RAL-233 61 chr2L 4601702 4601736 chr2L 4609143 4609177 mdg1 9 7441 3.0 3.0 3.0 2.2 7475 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-233 62 chr2L 4777667 4777694 chr2L 4778027 4778054 7 360 1.5 2.0 1.8 2.5 387 chr2L 4777667 intron CG15630 - chr2L 4777860 intron CG15630 - chr2L 4778054 intron CG15630 - chr2L_7_4775001 chr2L_4775001 RAL-233 63 chr2L 4855304 4855330 chr2L 4855382 4855414 7 83 0.5 1.5 1.0 3.5 110 chr2L 4855304 intron pog + chr2L 4855359 intron pog + chr2L 4855414 intron pog + chr2L_7_4855001 chr2L_4855001 RAL-233 64 chr2L 4869951 4869978 chr2L 4870037 4870064 9 86 2.0 1.5 1.8 3.2 113 chr2L 4869951 intron pog + chr2L 4870008 intron pog + chr2L 4870064 intron pog + chr2L_9_4870001 chr2L_4870001 RAL-233 65 chr2L 5500058 5500078 chr2L 5500144 5500164 6 86 2.0 4.0 3.0 1.5 106 chr2L 5500058 intergenic not near genes chr2L 5500111 intergenic not near genes chr2L 5500164 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-233 66 chr2L 5633519 5633547 chr2L 5633603 5633628 8 83 0.0 1.5 0.8 4.4 109 chr2L 5633519 intron CG31646 - chr2L 5633574 intron CG31646 - chr2L 5633628 intron CG31646 - chr2L_8_5630001 chr2L_5630001 RAL-233 67 chr2L 5774590 5774606 chr2L 5774804 5774820 7 213 2.5 0.5 1.5 2.8 230 chr2L 5774590 intron CG9171 - chr2L 5774705 intron CG9171 - chr2L 5774820 intron CG9171 - chr2L_7_5770001 chr2L_5770001 RAL-233 68 chr2L 5784949 5784974 chr2L 5785032 5785056 8 83 1.5 0.0 0.8 4.4 107 chr2L 5784949 intron CG9171 - chr2L 5785002 intron CG9171 - chr2L 5785056 intron CG9171 - chr2L_8_5785001 chr2L_5785001 RAL-233 69 chr2L 5827433 5827450 chr2L 5827528 5827548 6 97 0.5 2.0 1.2 2.7 115 chr2L 5827433 intron TrissinR + chr2L 5827490 intron TrissinR + chr2L 5827548 intron TrissinR + chr2L_6_5825001 chr2L_5825001 RAL-233 70 chr2L 5827714 5827735 chr2L 5836722 5836743 roo 7 9007 2.5 4.5 3.5 1.6 9029 chr2L 5827714 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836743 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-233 71 chr2L 5839091 5839117 chr2L 5839171 5839197 7 78 5.5 2.5 4.0 1.4 106 chr2L 5839091 intron TrissinR + chr2L 5839144 intron TrissinR + chr2L 5839197 intron TrissinR + chr2L_7_5835001 chr2L_5835001 RAL-233 72 chr2L 5897597 5897625 chr2L 5897675 5897706 14 80 3.0 3.5 3.2 3.3 109 chr2L 5897597 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897706 intergenic not near genes chr2L_14_5895001 chr2L_5895001 RAL-233 73 chr2L 5989032 5989063 chr2L 5989108 5989138 6 76 1.5 0.0 0.8 3.3 106 chr2L 5989032 intergenic ifc +,lid - chr2L 5989085 intergenic ifc +,lid - chr2L 5989138 intergenic lid -,ifc + chr2L_6_5985001 chr2L_5985001 RAL-233 74 chr2L 5993338 5993355 chr2L 5993427 5993447 10 91 2.0 3.0 2.5 2.9 109 chr2L 5993338 exon lid - chr2L 5993392 intron lid - chr2L 5993447 intron lid - chr2L_10_5990001 chr2L_5990001 RAL-233 75 chr2L 6070896 6070927 chr2L 6070985 6071016 11 85 0.0 1.0 0.5 7.3 120 chr2L 6070896 intergenic Kr-h2 +,CG9154 - chr2L 6070956 intergenic Kr-h2 +,CG9154 - chr2L 6071016 5` UTR Kr-h2 + chr2L_11_6070001 chr2L_6070001 RAL-233 76 chr2L 6261966 6262001 chr2L 6262042 6262077 4 76 1.0 1.5 1.2 1.8 111 chr2L 6261966 intron Ddr + chr2L 6262022 intron Ddr + chr2L 6262077 intron Ddr + chr2L_4_6260001 chr2L_6260001 RAL-233 77 chr2L 6286392 6286423 chr2L 6286486 6286517 8 91 2.5 1.0 1.8 2.9 125 chr2L 6286392 intron Ddr + chr2L 6286454 intron Ddr + chr2L 6286517 intron Ddr + chr2L_8_6285001 chr2L_6285001 RAL-233 78 chr2L 6371684 6371708 chr2L 6371758 6371786 8 77 2.5 0.5 1.5 3.2 102 chr2L 6371684 intergenic not near genes chr2L 6371735 intergenic not near genes chr2L 6371786 intergenic not near genes chr2L_8_6370001 chr2L_6370001 RAL-233 79 chr2L 6398703 6398720 chr2L 6398784 6398801 4 81 2.0 1.0 1.5 1.6 98 chr2L 6398703 intron CG42368 - chr2L 6398752 intron CG42368 - chr2L 6398801 intron CG42368 - chr2L_4_6395001 chr2L_6395001 RAL-233 80 chr2L 6426858 6426887 chr2L 6445118 6445147 roo 8 18260 3.5 5.0 4.2 1.5 18289 chr2L 6426858 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-233 81 chr2L 6544376 6544394 chr2L 6544468 6544485 4 92 2.5 1.0 1.8 1.4 109 chr2L 6544376 intron eya - chr2L 6544430 intron eya - chr2L 6544485 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-233 82 chr2L 6550427 6550453 chr2L 6550509 6550535 6 81 3.5 2.0 2.8 1.6 108 chr2L 6550427 intergenic not near genes chr2L 6550481 intergenic not near genes chr2L 6550535 intergenic not near genes chr2L_6_6550001 chr2L_6550001 RAL-233 83 chr2L 6655529 6655546 chr2L 6655891 6655904 5 360 1.0 4.5 2.8 1.3 375 chr2L 6655529 exon CG31633 - chr2L 6655716 exon CG31633 - chr2L 6655904 exon CG31633 - chr2L_5_6655001 chr2L_6655001 RAL-233 84 chr2L 6876790 6876810 chr2L 6882979 6883001 diver 6 6190 3.0 3.0 3.0 1.5 6211 chr2L 6876790 intron Nlg2 + chr2L 6879896 intron Nlg2 + chr2L 6883001 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-233 85 chr2L 6883744 6883777 chr2L 6883830 6883862 10 83 1.0 2.0 1.5 4.0 118 chr2L 6883744 intron Nlg2 + chr2L 6883803 intron Nlg2 + chr2L 6883862 intron Nlg2 + chr2L_10_6880001 chr2L_6880001 RAL-233 86 chr2L 7107573 7107597 chr2L 7107662 7107687 11 89 0.5 0.5 0.5 7.3 114 chr2L 7107573 intron Pvf3 - chr2L 7107630 intron Pvf3 - chr2L 7107687 intron Pvf3 - chr2L_11_7105001 chr2L_7105001 RAL-233 87 chr2L 7152197 7152206 chr2L 7152279 7152288 7 82 2.0 3.5 2.8 1.8 91 chr2L 7152197 intron Pvf3 - chr2L 7152242 intron Pvf3 - chr2L 7152288 intron Pvf3 - chr2L_7_7150001 chr2L_7150001 RAL-233 88 chr2L 7343324 7343354 chr2L 7350440 7350470 roo 9 7115 1.5 3.0 2.2 2.8 7146 chr2L 7343324 intron Wnt6 + chr2L 7346897 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-233 89 chr2L 7570965 7570991 chr2L 7571042 7571072 8 80 1.5 1.5 1.5 3.2 107 chr2L 7570965 intron RapGAP1 - chr2L 7571018 intron RapGAP1 - chr2L 7571072 intron RapGAP1 - chr2L_8_7570001 chr2L_7570001 RAL-233 90 chr2L 7766635 7766656 chr2L 7766711 7766716 4 70 1.5 0.0 0.8 2.2 81 chr2L 7766635 intergenic not near genes chr2L 7766676 intergenic not near genes chr2L 7766716 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-233 91 chr2L 7922747 7922768 chr2L 7922826 7922849 6 80 1.0 2.0 1.5 2.4 102 chr2L 7922747 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922849 intron Snoo - chr2L_6_7920001 chr2L_7920001 RAL-233 92 chr2L 7977089 7977108 chr2L 7984065 7984084 297 6 6976 0.5 2.5 1.5 2.4 6995 chr2L 7977089 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984084 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-233 93 chr2L 8238421 8238436 chr2L 8238492 8238503 5 74 4.0 1.5 2.8 1.3 82 chr2L 8238421 intron Pvr - chr2L 8238462 intron Pvr - chr2L 8238503 intron Pvr - chr2L_5_8235001 chr2L_8235001 RAL-233 94 chr2L 8270006 8270022 chr2L 8270087 8270103 5 81 1.0 2.5 1.8 1.8 97 chr2L 8270006 intron Btk29A - chr2L 8270054 intron Btk29A - chr2L 8270103 intron Btk29A - chr2L_5_8270001 chr2L_8270001 RAL-233 95 chr2L 8271620 8271764 chr2L 8271696 8271865 4 88 0.0 0.0 0.0 4.0 245 chr2L 8271620 intron Btk29A - chr2L 8271742 intron Btk29A - chr2L 8271865 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-233 96 chr2L 8588915 8588927 chr2L 8589006 8589017 4 91 0.5 2.5 1.5 1.6 102 chr2L 8588915 intron Sema-1a + chr2L 8588966 intron Sema-1a + chr2L 8589017 intron Sema-1a + chr2L_4_8585001 chr2L_8585001 RAL-233 97 chr2L 8719209 8719232 chr2L 8719285 8719308 4 72 1.0 1.0 1.0 2.0 99 chr2L 8719209 intron raw - chr2L 8719258 intron raw - chr2L 8719308 intron raw - chr2L_4_8715001 chr2L_8715001 RAL-233 98 chr2L 8723119 8723145 chr2L 8731496 8731522 Tirant 5 8374 2.5 3.5 3.0 1.2 8403 chr2L 8723119 intron raw - chr2L 8727320 intron raw - chr2L 8731522 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-233 99 chr2L 8939666 8939699 chr2L 8939746 8939779 5 80 1.5 1.5 1.5 2.0 113 chr2L 8939666 3` UTR Tsp29Fb + chr2L 8939722 3` UTR Tsp29Fb + chr2L 8939779 intergenic CG9510 -,Tsp29Fb + chr2L_5_8935001 chr2L_8935001 RAL-233 100 chr2L 9000277 9000306 chr2L 9007787 9007816 roo 10 7510 2.5 1.5 2.0 3.3 7539 chr2L 9000277 intergenic Try29F + chr2L 9004046 intergenic not near genes chr2L 9007816 intergenic not near genes chr2L_10_9000001 chr2L_9000001 RAL-233 101 chr2L 9040030 9040041 chr2L 9040117 9040128 4 87 2.5 0.0 1.2 1.8 98 chr2L 9040030 intergenic not near genes chr2L 9040079 intergenic not near genes chr2L 9040128 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-233 102 chr2L 9040895 9040912 chr2L 9040971 9040988 6 76 4.5 3.5 4.0 1.2 93 chr2L 9040895 intergenic not near genes chr2L 9040942 intergenic not near genes chr2L 9040988 intergenic not near genes chr2L_6_9040001 chr2L_9040001 RAL-233 103 chr2L 9084339 9084340 chr2L 16217660 16217660 5 7133321 11.5 8.5 10.0 0.5 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-233 104 chr2L 9174303 9174326 chr2L 9174639 9174663 6 337 1.0 2.0 1.5 2.4 360 chr2L 9174303 intron tai + chr2L 9174483 intron tai + chr2L 9174663 intron tai + chr2L_6_9170001 chr2L_9170001 RAL-233 105 chr2L 9217974 9218000 chr2L 9222760 9222787 Doc 4 4786 1.0 2.0 1.5 1.6 4813 chr2L 9217974 intron tai + chr2L 9220380 intron tai + chr2L 9222787 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-233 106 chr2L 9259215 9259247 chr2L 9259308 9259336 5 89 0.0 2.5 1.2 2.3 121 chr2L 9259215 intron Ggamma30A + chr2L 9259276 intron Ggamma30A + chr2L 9259336 intron Ggamma30A + chr2L_5_9255001 chr2L_9255001 RAL-233 107 chr2L 9297383 9297405 chr2L 9297460 9297482 7 77 1.5 2.0 1.8 2.5 99 chr2L 9297383 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-233 108 chr2L 9303362 9303494 chr2L 9303465 9303569 7 87 0.0 0.0 0.0 7.0 207 chr2L 9303362 intergenic not near genes chr2L 9303466 intergenic not near genes chr2L 9303569 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-233 109 chr2L 9393499 9393526 chr2L 9396465 9396493 jockey 11 2967 1.5 2.0 1.8 3.9 2994 chr2L 9393499 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396493 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-233 110 chr2L 9618898 9618915 chr2L 9618970 9618992 4 76 1.5 1.5 1.5 1.6 94 chr2L 9618898 intron GlcAT-S + chr2L 9618945 intron GlcAT-S + chr2L 9618992 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-233 111 chr2L 9633710 9633744 chr2L 9633795 9633829 10 80 3.0 2.5 2.8 2.6 119 chr2L 9633710 intergenic Apoltp + chr2L 9633770 intergenic Apoltp + chr2L 9633829 intergenic Apoltp + chr2L_10_9630001 chr2L_9630001 RAL-233 112 chr2L 9973727 9973758 chr2L 9980845 9980877 HMS-Beagle 19 7118 2.0 6.0 4.0 3.8 7150 chr2L 9973727 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_19_9975001 chr2L_9975001 RAL-233 113 chr2L 10023071 10023097 chr2L 10023156 10023175 12 81 0.5 3.0 1.8 4.3 104 chr2L 10023071 intergenic not near genes chr2L 10023123 intergenic not near genes chr2L 10023175 intergenic not near genes chr2L_12_10020001 chr2L_10020001 RAL-233 114 chr2L 10045419 10045431 chr2L 10045497 10045511 9 79 0.5 6.0 3.2 2.1 92 chr2L 10045419 intergenic not near genes chr2L 10045465 intergenic not near genes chr2L 10045511 intergenic not near genes chr2L_9_10045001 chr2L_10045001 RAL-233 115 chr2L 10105308 10105315 chr2L 10105363 10105389 5 66 1.5 2.0 1.8 1.8 81 chr2L 10105308 intron,intron CG44153 -,CG34109 + chr2L 10105348 intron,intron CG44153 -,CG34109 + chr2L 10105389 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-233 116 chr2L 10133048 10133079 chr2L 10133128 10133160 8 79 3.0 2.5 2.8 2.1 112 chr2L 10133048 intron CG44153 - chr2L 10133104 intron CG44153 - chr2L 10133160 intron CG44153 - chr2L_8_10130001 chr2L_10130001 RAL-233 117 chr2L 10156328 10156350 chr2L 10163797 10163820 blood 5 7467 2.0 3.5 2.8 1.3 7492 chr2L 10156328 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163820 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-233 118 chr2L 10572703 10572733 chr2L 10572784 10572814 7 81 1.0 1.0 1.0 3.5 111 chr2L 10572703 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572814 intron Trim9 + chr2L_7_10570001 chr2L_10570001 RAL-233 119 chr2L 10580797 10580822 chr2L 10580878 10580903 7 81 2.0 2.0 2.0 2.3 106 chr2L 10580797 intron Trim9 + chr2L 10580850 intron Trim9 + chr2L 10580903 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-233 120 chr2L 10705460 10705481 chr2L 10705538 10705563 10 78 2.5 2.0 2.2 3.1 103 chr2L 10705460 exon Lip2 - chr2L 10705512 intron Lip2 - chr2L 10705563 intron Lip2 - chr2L_10_10705001 chr2L_10705001 RAL-233 121 chr2L 10727289 10727304 chr2L 10727400 10727415 5 111 0.0 0.0 0.0 5.0 126 chr2L 10727289 intron CG6431 + chr2L 10727352 intron CG6431 + chr2L 10727415 intron CG6431 + chr2L_5_10725001 chr2L_10725001 RAL-233 122 chr2L 10810947 10810963 chr2L 10811027 10811043 4 80 1.0 0.5 0.8 2.2 96 chr2L 10810947 intron Nos - chr2L 10810995 intron Nos - chr2L 10811043 intron Nos - chr2L_4_10810001 chr2L_10810001 RAL-233 123 chr2L 10862849 10862858 chr2L 10864459 10864472 Rt1c 4 1613 4.5 5.5 5.0 0.7 1623 chr2L 10862849 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864472 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-233 124 chr2L 10862859 10862873 chr2L 10864453 10864463 Rt1c 7 1606 3.5 5.0 4.2 1.3 1604 chr2L 10862859 3` UTR CR43807 - chr2L 10863661 intron CR43807 - chr2L 10864463 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-233 125 chr2L 10939775 10939794 chr2L 10939855 10939874 4 80 0.5 2.5 1.5 1.6 99 chr2L 10939775 intron dpr2 - chr2L 10939824 intron dpr2 - chr2L 10939874 intron dpr2 - chr2L_4_10935001 chr2L_10935001 RAL-233 126 chr2L 10946953 10946964 chr2L 10956168 10956179 roo 9 9213 5.5 5.5 5.5 1.4 9226 chr2L 10946953 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956179 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-233 127 chr2L 11174644 11174660 chr2L 11174720 11174737 5 76 0.0 4.5 2.2 1.6 93 chr2L 11174644 intron Ca-beta - chr2L 11174690 intron Ca-beta - chr2L 11174737 intron Ca-beta - chr2L_5_11170001 chr2L_11170001 RAL-233 128 chr2L 11248575 11248585 chr2L 11248654 11248668 5 82 7.5 3.0 5.2 0.8 93 chr2L 11248575 intron ab + chr2L 11248622 intron ab + chr2L 11248668 intron ab + chr2L_5_11245001 chr2L_11245001 RAL-233 129 chr2L 11298822 11298852 chr2L 11298899 11298929 5 77 1.0 0.5 0.8 2.8 107 chr2L 11298822 intergenic not near genes chr2L 11298876 intergenic not near genes chr2L 11298929 intergenic not near genes chr2L_5_11295001 chr2L_11295001 RAL-233 130 chr2L 11330207 11330233 chr2L 11330303 11330329 4 96 0.5 0.0 0.2 3.3 122 chr2L 11330207 intergenic not near genes chr2L 11330268 intergenic not near genes chr2L 11330329 intergenic not near genes chr2L_4_11330001 chr2L_11330001 RAL-233 131 chr2L 11689935 11689961 chr2L 11690140 11690167 6 205 2.5 5.5 4.0 1.2 232 chr2L 11689935 intergenic not near genes chr2L 11690051 intergenic not near genes chr2L 11690167 intergenic not near genes chr2L_6_11690001 chr2L_11690001 RAL-233 132 chr2L 11713516 11713533 chr2L 11720984 11721001 blood 6 7468 2.0 1.5 1.8 2.1 7485 chr2L 11713516 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721001 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-233 133 chr2L 11752867 11752889 chr2L 11753157 11753164 4 285 1.5 0.5 1.0 2.0 297 chr2L 11752867 intergenic CG42470 - chr2L 11753016 3` UTR CG42470 - chr2L 11753164 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-233 134 chr2L 11821462 11821488 chr2L 11821562 11821588 6 100 1.5 3.0 2.2 1.9 126 chr2L 11821462 intron Pde1c - chr2L 11821525 intron Pde1c - chr2L 11821588 intron Pde1c - chr2L_6_11820001 chr2L_11820001 RAL-233 135 chr2L 11892542 11892815 chr2L 11892636 11892906 4 92 2.0 2.5 2.2 1.2 364 chr2L 11892542 intron Pde1c - chr2L 11892724 intron Pde1c - chr2L 11892906 intron Pde1c - chr2L_4_11890001 chr2L_11890001 RAL-233 136 chr2L 11925595 11925613 chr2L 11925681 11925702 7 88 3.5 4.0 3.8 1.5 107 chr2L 11925595 5` UTR Pde1c - chr2L 11925648 5` UTR Pde1c - chr2L 11925702 5` UTR Pde1c - chr2L_7_11925001 chr2L_11925001 RAL-233 137 chr2L 12237012 12237036 chr2L 12237096 12237120 5 83 1.5 3.0 2.2 1.6 108 chr2L 12237012 intron aret + chr2L 12237066 intron aret + chr2L 12237120 intron aret + chr2L_5_12235001 chr2L_12235001 RAL-233 138 chr2L 12299617 12299633 chr2L 12299694 12299710 5 77 3.5 0.0 1.8 1.8 93 chr2L 12299617 intron aret + chr2L 12299664 intron aret + chr2L 12299710 intron aret + chr2L_5_12295001 chr2L_12295001 RAL-233 139 chr2L 12470759 12470765 chr2L 12470836 12470841 4 77 0.5 0.5 0.5 2.7 82 chr2L 12470759 intron bun - chr2L 12470800 intron bun - chr2L 12470841 intron bun - chr2L_4_12470001 chr2L_12470001 RAL-233 140 chr2L 12731055 12731090 chr2L 12735822 12735857 F-element 4 4767 0.5 1.0 0.8 2.2 4802 chr2L 12731055 intron MRP + chr2L 12733456 intron MRP + chr2L 12735857 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-233 141 chr2L 12754937 12754951 chr2L 12755014 12755028 5 77 3.5 0.0 1.8 1.8 91 chr2L 12754937 intergenic not near genes chr2L 12754982 intergenic not near genes chr2L 12755028 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-233 142 chr2L 12791602 12791623 chr2L 12795277 12795295 F-element 5 3674 3.5 1.0 2.2 1.6 3693 chr2L 12791602 intergenic not near genes chr2L 12793448 intergenic not near genes chr2L 12795295 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-233 143 chr2L 12796893 12796918 chr2L 12796972 12796997 5 79 1.5 4.0 2.8 1.3 104 chr2L 12796893 intergenic not near genes chr2L 12796945 intergenic not near genes chr2L 12796997 intergenic not near genes chr2L_5_12795001 chr2L_12795001 RAL-233 144 chr2L 12812539 12812551 chr2L 12813164 12813176 4 625 1.5 2.5 2.0 1.3 637 chr2L 12812539 intergenic not near genes chr2L 12812858 intergenic not near genes chr2L 12813176 intergenic not near genes chr2L_4_12810001 chr2L_12810001 RAL-233 145 chr2L 12861698 12861731 chr2L 12863165 12863179 hobo 10 1462 3.5 2.0 2.8 2.6 1481 chr2L 12861698 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-233 146 chr2L 12895485 12895506 chr2L 12895745 12895766 6 258 0.5 1.0 0.8 3.3 281 chr2L 12895485 intergenic not near genes chr2L 12895626 intergenic not near genes chr2L 12895766 intergenic not near genes chr2L_6_12895001 chr2L_12895001 RAL-233 147 chr2L 12896815 12896824 chr2L 12896904 12896913 4 89 3.5 3.0 3.2 1.0 98 chr2L 12896815 intergenic not near genes chr2L 12896864 intergenic not near genes chr2L 12896913 intergenic not near genes chr2L_4_12895001 chr2L_12895001 RAL-233 148 chr2L 12933848 12933878 chr2L 12941315 12941336 blood 10 7464 3.5 2.5 3.0 2.5 7488 chr2L 12933848 intergenic not near genes chr2L 12937592 intergenic not near genes chr2L 12941336 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-233 149 chr2L 12989048 12989075 chr2L 12989135 12989163 11 83 1.0 2.5 1.8 3.9 115 chr2L 12989048 intergenic not near genes chr2L 12989106 intergenic not near genes chr2L 12989163 intergenic not near genes chr2L_11_12985001 chr2L_12985001 RAL-233 150 chr2L 13069332 13069362 chr2L 13069417 13069447 9 85 1.0 2.0 1.5 3.6 115 chr2L 13069332 intergenic not near genes chr2L 13069390 intergenic not near genes chr2L 13069447 intergenic not near genes chr2L_9_13065001 chr2L_13065001 RAL-233 151 chr2L 13144028 13144059 chr2L 13144112 13144142 6 83 1.5 4.0 2.8 1.6 114 chr2L 13144028 intergenic CG16978 - chr2L 13144085 intergenic CG16978 - chr2L 13144142 intergenic not near genes chr2L_6_13140001 chr2L_13140001 RAL-233 152 chr2L 13147746 13147764 chr2L 13147822 13147840 4 76 2.5 0.0 1.2 1.8 94 chr2L 13147746 intergenic not near genes chr2L 13147793 intergenic not near genes chr2L 13147840 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-233 153 chr2L 13231884 13231913 chr2L 13231995 13232024 6 111 1.5 2.0 1.8 2.1 140 chr2L 13231884 intergenic Prosalpha6T + chr2L 13231954 intergenic Prosalpha6T + chr2L 13232024 intergenic Prosalpha6T + chr2L_6_13230001 chr2L_13230001 RAL-233 154 chr2L 13245403 13245425 chr2L 13245496 13245518 5 93 1.0 3.0 2.0 1.7 115 chr2L 13245403 intergenic snRNA:U5:34A + chr2L 13245460 intergenic snRNA:U5:34A + chr2L 13245518 intergenic not near genes chr2L_5_13245001 chr2L_13245001 RAL-233 155 chr2L 13405649 13405665 chr2L 13410446 13410460 Doc 4 4796 4.5 4.0 4.2 0.8 4811 chr2L 13405649 exon CG7110 + chr2L 13408054 intron CG7110 + chr2L 13410460 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-233 156 chr2L 13417427 13417453 chr2L 13417513 13417541 7 88 2.0 1.5 1.8 2.5 114 chr2L 13417427 intron,intron CG42784 +,CG43850 + chr2L 13417484 intron,intron CG42784 +,CG43850 + chr2L 13417541 intron,intron CG42784 +,CG43850 + chr2L_7_13415001 chr2L_13415001 RAL-233 157 chr2L 13481463 13481473 chr2L 13482069 13482080 jockey 5 607 4.0 6.0 5.0 0.8 617 chr2L 13481463 intron CG42784 + chr2L 13481772 intron CG42784 + chr2L 13482080 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-233 158 chr2L 13622153 13622164 chr2L 13622252 13622263 5 99 0.0 0.5 0.2 4.2 110 chr2L 13622153 intron kuz + chr2L 13622208 intron kuz + chr2L 13622263 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-233 159 chr2L 13853099 13853118 chr2L 13862249 13862268 roo 4 9150 4.0 0.0 2.0 1.3 9169 chr2L 13853099 intron CenG1A + chr2L 13857684 intron CenG1A + chr2L 13862268 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-233 160 chr2L 13966097 13966114 chr2L 13966246 13966263 6 149 0.5 2.5 1.5 2.4 166 chr2L 13966097 intron NimB2 - chr2L 13966180 intron NimB2 - chr2L 13966263 intron NimB2 - chr2L_6_13965001 chr2L_13965001 RAL-233 161 chr2L 14180065 14180094 chr2L 14180141 14180170 9 75 1.5 1.0 1.2 4.1 105 chr2L 14180065 intron CG43333 - chr2L 14180118 intron CG43333 - chr2L 14180170 intron CG43333 - chr2L_9_14180001 chr2L_14180001 RAL-233 162 chr2L 14333607 14333634 chr2L 14335221 14335248 11 1616 24.0 26.0 25.0 0.4 1641 chr2L 14333607 exon ms(2)34Fe + chr2L 14334428 exon CG33090 + chr2L 14335248 intron CG33090 + chr2L_11_14330001 chr2L_14330001 RAL-233 163 chr2L 14549151 14549174 chr2L 14549227 14549250 5 76 1.5 1.5 1.5 2.0 99 chr2L 14549151 intergenic CG4218 - chr2L 14549200 intergenic CG4218 - chr2L 14549250 intergenic CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-233 164 chr2L 14601979 14602002 chr2L 14602063 14602085 8 84 2.0 1.5 1.8 2.9 106 chr2L 14601979 exon osp - chr2L 14602032 intron osp - chr2L 14602085 intron osp - chr2L_8_14600001 chr2L_14600001 RAL-233 165 chr2L 14716603 14716631 chr2L 14716681 14716683 7 72 0.0 0.5 0.2 5.8 80 chr2L 14716603 intergenic not near genes chr2L 14716643 intergenic not near genes chr2L 14716683 intergenic not near genes chr2L_7_14715001 chr2L_14715001 RAL-233 166 chr2L 14758805 14758827 chr2L 14758885 14758907 5 80 0.5 2.0 1.2 2.3 102 chr2L 14758805 intergenic not near genes chr2L 14758856 intergenic not near genes chr2L 14758907 intergenic not near genes chr2L_5_14755001 chr2L_14755001 RAL-233 167 chr2L 14803883 14803908 chr2L 14809086 14809111 copia 9 5202 3.0 3.0 3.0 2.2 5228 chr2L 14803883 intergenic not near genes chr2L 14806497 intergenic not near genes chr2L 14809111 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-233 168 chr2L 14889966 14889988 chr2L 14890390 14890413 jockey 4 425 2.0 1.5 1.8 1.4 447 chr2L 14889966 intergenic not near genes chr2L 14890190 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-233 169 chr2L 15003553 15003566 chr2L 15003636 15003650 4 84 2.0 5.5 3.8 0.8 97 chr2L 15003553 intergenic not near genes chr2L 15003602 intergenic not near genes chr2L 15003650 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-233 170 chr2L 15077908 15078100 chr2L 15077996 15078188 6 88 0.5 1.5 1.0 3.0 280 chr2L 15077908 intron CG15270 + chr2L 15078048 intron CG15270 + chr2L 15078188 intron CG15270 + chr2L_6_15075001 chr2L_15075001 RAL-233 171 chr2L 15079080 15079108 chr2L 15079183 15079207 7 103 4.5 3.0 3.8 1.5 127 chr2L 15079080 intron CG15270 + chr2L 15079144 intron CG15270 + chr2L 15079207 intron CG15270 + chr2L_7_15075001 chr2L_15075001 RAL-233 172 chr2L 15284660 15284681 chr2L 15285298 15285319 4 637 1.0 3.5 2.2 1.2 659 chr2L 15284660 intergenic CG15263 + chr2L 15284990 intergenic CG15263 + chr2L 15285319 exon CG15263 + chr2L_4_15280001 chr2L_15280001 RAL-233 173 chr2L 15470515 15470537 chr2L 15470613 15470635 7 98 1.5 1.0 1.2 3.2 120 chr2L 15470515 intergenic not near genes chr2L 15470575 intergenic not near genes chr2L 15470635 intergenic not near genes chr2L_7_15470001 chr2L_15470001 RAL-233 174 chr2L 15956040 15956057 chr2L 15957507 15957523 hobo 4 1466 2.5 0.0 1.2 1.8 1483 chr2L 15956040 intron beat-Ib - chr2L 15956782 intron beat-Ib - chr2L 15957523 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-233 175 chr2L 15988041 15988073 chr2L 15988129 15988161 4 88 0.5 1.5 1.0 2.0 120 chr2L 15988041 intergenic not near genes chr2L 15988101 intergenic not near genes chr2L 15988161 intergenic not near genes chr2L_4_15985001 chr2L_15985001 RAL-233 176 chr2L 6933403 6933408 chr2L 16062289 16062295 5 9128887 8.0 3.5 5.8 0.7 9128892 chr2L 6933403 intron CG18304 - chr2L 11497849 exon CG6488 - chr2L 16062295 intron beat-Ia + chr2L_5_11495001 chr2L_11495001 RAL-233 177 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 12 145889 9.5 8.5 9.0 1.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-233 178 chr2L 16210500 16210518 chr2L 16210579 16210597 6 79 0.0 2.5 1.2 2.7 97 chr2L 16210500 intergenic not near genes chr2L 16210548 intergenic not near genes chr2L 16210597 intergenic not near genes chr2L_6_16210001 chr2L_16210001 RAL-233 179 chr2L 9084338 9084340 chr2L 16217660 16217660 6 7133320 11.5 8.5 10.0 0.5 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-233 180 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 9.5 8.5 9.0 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-233 181 chr2L 16254894 16254919 chr2L 16255164 16255188 6 270 0.0 1.5 0.8 3.3 294 chr2L 16254894 intron PRL-1 - chr2L 16255041 intron PRL-1 - chr2L 16255188 intron PRL-1 - chr2L_6_16255001 chr2L_16255001 RAL-233 182 chr2L 16280256 16280285 chr2L 16281426 16281456 1360 13 1168 2.0 3.5 2.8 3.4 1200 chr2L 16280256 intron crp - chr2L 16280856 intron crp - chr2L 16281456 intron crp - chr2L_13_16280001 chr2L_16280001 RAL-233 183 chr2L 16726776 16726803 chr2L 16726987 16727015 6 212 1.5 3.0 2.2 1.9 239 chr2L 16726776 intron VhaSFD - chr2L 16726896 intron VhaSFD - chr2L 16727015 exon VhaSFD - chr2L_6_16725001 chr2L_16725001 RAL-233 184 chr2L 16927764 16927798 chr2L 16927842 16927878 8 80 5.0 2.5 3.8 1.7 114 chr2L 16927764 intergenic not near genes chr2L 16927821 intergenic not near genes chr2L 16927878 intergenic not near genes chr2L_8_16925001 chr2L_16925001 RAL-233 185 chr2L 17000120 17000151 chr2L 17000241 17000273 7 121 1.0 2.0 1.5 2.8 153 chr2L 17000120 intergenic not near genes chr2L 17000196 intergenic not near genes chr2L 17000273 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-233 186 chr2L 17157851 17157882 chr2L 17157932 17157964 5 82 2.5 0.0 1.2 2.3 113 chr2L 17157851 intron,intron CG34106 +,beat-IIIa + chr2L 17157908 intron,intron CG34106 +,beat-IIIa + chr2L 17157964 intron,intron CG34106 +,beat-IIIa + chr2L_5_17155001 chr2L_17155001 RAL-233 187 chr2L 17159869 17159878 chr2L 17159952 17159959 4 82 1.0 4.0 2.5 1.1 90 chr2L 17159869 intron,intron CG34106 +,beat-IIIa + chr2L 17159914 intron,intron CG34106 +,beat-IIIa + chr2L 17159959 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-233 188 chr2L 17163606 17163630 chr2L 17163695 17163719 4 89 1.5 1.0 1.2 1.8 113 chr2L 17163606 intron,intron CG34106 +,beat-IIIa + chr2L 17163662 intron,intron CG34106 +,beat-IIIa + chr2L 17163719 intron,intron CG34106 +,beat-IIIa + chr2L_4_17160001 chr2L_17160001 RAL-233 189 chr2L 17206172 17206208 chr2L 17206258 17206293 4 86 2.0 0.5 1.2 1.8 121 chr2L 17206172 intron beat-IIIc - chr2L 17206232 intron beat-IIIc - chr2L 17206293 intron beat-IIIc - chr2L_4_17205001 chr2L_17205001 RAL-233 190 chr2L 17239045 17239059 chr2L 17239129 17239143 6 84 0.5 2.0 1.2 2.7 98 chr2L 17239045 intron beat-IIIc - chr2L 17239094 intron beat-IIIc - chr2L 17239143 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-233 191 chr2L 17264745 17264764 chr2L 17264825 17264844 4 80 2.0 0.5 1.2 1.8 99 chr2L 17264745 intergenic not near genes chr2L 17264794 intergenic not near genes chr2L 17264844 intergenic not near genes chr2L_4_17260001 chr2L_17260001 RAL-233 192 chr2L 17303457 17303469 chr2L 17303619 17303639 4 163 3.5 1.5 2.5 1.1 182 chr2L 17303457 intergenic not near genes chr2L 17303548 intergenic not near genes chr2L 17303639 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-233 193 chr2L 17707534 17707543 chr2L 17707598 17707629 4 80 0.5 1.5 1.0 2.0 95 chr2L 17707534 intron CadN - chr2L 17707582 intron CadN - chr2L 17707629 intron CadN - chr2L_4_17705001 chr2L_17705001 RAL-233 194 chr2L 17730973 17731004 chr2L 17731120 17731136 7 145 0.5 2.0 1.2 3.2 163 chr2L 17730973 intron CadN - chr2L 17731054 intron CadN - chr2L 17731136 intron CadN - chr2L_7_17730001 chr2L_17730001 RAL-233 195 chr2L 17951948 17951974 chr2L 17953414 17953441 hobo 5 1467 1.0 1.5 1.2 2.3 1493 chr2L 17951948 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953441 intergenic not near genes chr2L_5_17950001 chr2L_17950001 RAL-233 196 chr2L 18046549 18046576 chr2L 18046813 18046840 10 264 15.5 21.0 18.2 0.5 291 chr2L 18046549 intron rdo + chr2L 18046694 intron rdo + chr2L 18046840 intron rdo + chr2L_10_18045001 chr2L_18045001 RAL-233 197 chr2L 18103052 18103070 chr2L 18103128 18103151 4 76 2.5 4.5 3.5 0.9 99 chr2L 18103052 intergenic not near genes chr2L 18103102 intergenic not near genes chr2L 18103151 intergenic not near genes chr2L_4_18100001 chr2L_18100001 RAL-233 198 chr2L 18220585 18220616 chr2L 18220763 18220795 4 175 1.0 2.0 1.5 1.6 210 chr2L 18220585 intron CG42750 - chr2L 18220690 intron CG42750 - chr2L 18220795 intron CG42750 - chr2L_4_18220001 chr2L_18220001 RAL-233 199 chr2L 18231138 18231159 chr2L 18231223 18231244 7 85 0.0 0.5 0.2 5.8 106 chr2L 18231138 intron CG42750 - chr2L 18231191 intron CG42750 - chr2L 18231244 intron CG42750 - chr2L_7_18230001 chr2L_18230001 RAL-233 200 chr2L 18561567 18561579 chr2L 18561668 18561680 4 100 2.0 0.5 1.2 1.8 113 chr2L 18561567 intron Pde11 - chr2L 18561624 intron Pde11 - chr2L 18561680 intron Pde11 - chr2L_4_18560001 chr2L_18560001 RAL-233 201 chr2L 18574174 18574207 chr2L 18574290 18574323 7 116 3.0 2.5 2.8 1.8 149 chr2L 18574174 intron Pde11 - chr2L 18574248 intron Pde11 - chr2L 18574323 intron Pde11 - chr2L_7_18570001 chr2L_18570001 RAL-233 202 chr2L 18898396 18898423 chr2L 18898478 18898504 5 82 3.0 2.0 2.5 1.4 108 chr2L 18898396 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898504 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-233 203 chr2L 19070274 19070295 chr2L 19070366 19070388 8 89 1.5 3.0 2.2 2.5 114 chr2L 19070274 intergenic CG10702 - chr2L 19070331 intergenic CG10702 - chr2L 19070388 intergenic not near genes chr2L_8_19070001 chr2L_19070001 RAL-233 204 chr2L 19147369 19147403 chr2L 19154404 19154437 297 8 7035 1.0 2.0 1.5 3.2 7068 chr2L 19147369 intron brat + chr2L 19150903 intron brat + chr2L 19154437 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-233 205 chr2L 19163240 19163268 chr2L 19163328 19163346 9 86 0.5 3.5 2.0 3.0 106 chr2L 19163240 intron brat + chr2L 19163293 intron brat + chr2L 19163346 intron brat + chr2L_9_19160001 chr2L_19160001 RAL-233 206 chr2L 19228456 19228489 chr2L 19229321 19229353 5 864 0.5 0.0 0.2 4.2 897 chr2L 19228456 intergenic not near genes chr2L 19228904 intergenic not near genes chr2L 19229353 intergenic not near genes chr2L_5_19225001 chr2L_19225001 RAL-233 207 chr2L 19246838 19246849 chr2L 19246918 19246929 4 79 1.0 2.0 1.5 1.6 91 chr2L 19246838 intergenic not near genes chr2L 19246884 intergenic not near genes chr2L 19246929 intergenic not near genes chr2L_4_19245001 chr2L_19245001 RAL-233 208 chr2L 19364091 19364106 chr2L 19364157 19364186 4 76 1.0 0.5 0.8 2.2 95 chr2L 19364091 intergenic CG13086 + chr2L 19364138 intergenic CG13086 + chr2L 19364186 intergenic CG13086 + chr2L_4_19360001 chr2L_19360001 RAL-233 209 chr2L 19378342 19378363 chr2L 19378425 19378446 7 83 2.5 2.0 2.2 2.2 104 chr2L 19378342 intergenic not near genes chr2L 19378394 intergenic not near genes chr2L 19378446 intergenic not near genes chr2L_7_19375001 chr2L_19375001 RAL-233 210 chr2L 19380510 19380524 chr2L 19380589 19380604 6 80 0.5 0.0 0.2 5.0 94 chr2L 19380510 intergenic CG17350 + chr2L 19380557 intergenic CG17350 + chr2L 19380604 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-233 211 chr2L 19407728 19407740 chr2L 19407925 19407936 4 196 2.0 4.5 3.2 1.0 208 chr2L 19407728 intron Pax - chr2L 19407832 intron Pax - chr2L 19407936 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-233 212 chr2L 19544602 19544629 chr2L 19544664 19544666 9 62 5.0 3.5 4.2 1.7 64 chr2L 19544602 exon ref(2)P + chr2L 19544634 exon ref(2)P + chr2L 19544666 exon ref(2)P + chr2L_9_19540001 chr2L_19540001 RAL-233 213 chr2L 19562531 19562541 chr2L 19562610 19562621 5 79 7.5 4.5 6.0 0.7 90 chr2L 19562531 exon Tep5 + chr2L 19562576 intron Tep5 + chr2L 19562621 intron Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-233 214 chr2L 19562544 19562557 chr2L 19562608 19562637 5 77 4.5 3.5 4.0 1.0 93 chr2L 19562544 intron Tep5 + chr2L 19562590 intron Tep5 + chr2L 19562637 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-233 215 chr2L 19601583 19601598 chr2L 19601660 19601675 4 77 1.0 1.5 1.2 1.8 92 chr2L 19601583 intron,intron Lar +,CR44978 - chr2L 19601629 intron,intron Lar +,CR44978 - chr2L 19601675 intron,intron Lar +,CR44978 - chr2L_4_19600001 chr2L_19600001 RAL-233 216 chr2L 19617633 19617660 chr2L 19618078 19618102 10 442 2.0 1.5 1.8 3.6 469 chr2L 19617633 intron Lar + chr2L 19617868 intron Lar + chr2L 19618102 intron Lar + chr2L_10_19615001 chr2L_19615001 RAL-233 217 chr2L 19620098 19620132 chr2L 19621086 19621117 jockey 11 987 5.0 2.0 3.5 2.4 1019 chr2L 19620098 intron Lar + chr2L 19620608 intron Lar + chr2L 19621117 intron Lar + chr2L_11_19620001 chr2L_19620001 RAL-233 218 chr2L 19623582 19623609 chr2L 19623677 19623704 5 95 1.0 2.0 1.5 2.0 122 chr2L 19623582 intron Lar + chr2L 19623643 intron Lar + chr2L 19623704 intron Lar + chr2L_5_19620001 chr2L_19620001 RAL-233 219 chr2L 19703538 19703566 chr2L 19712674 19712702 roo 6 9135 2.0 1.5 1.8 2.1 9164 chr2L 19703538 intron Lar + chr2L 19708120 intron Lar + chr2L 19712702 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-233 220 chr2L 19712686 19712719 chr2L 19712770 19712798 10 78 1.0 2.5 1.8 3.6 112 chr2L 19712686 intron Lar + chr2L 19712742 intron Lar + chr2L 19712798 intron Lar + chr2L_10_19710001 chr2L_19710001 RAL-233 221 chr2L 19737357 19737389 chr2L 19740825 19740843 1360 11 3465 3.0 3.0 3.0 2.8 3486 chr2L 19737357 intergenic Nf-YB + chr2L 19739100 intergenic not near genes chr2L 19740843 intergenic not near genes chr2L_11_19735001 chr2L_19735001 RAL-233 222 chr2L 19762821 19762839 chr2L 19763063 19763081 pogo 4 242 2.5 1.0 1.8 1.4 260 chr2L 19762821 intron fbp - chr2L 19762951 intron fbp - chr2L 19763081 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-233 223 chr2L 19901013 19901038 chr2L 19901092 19901112 4 77 1.5 3.0 2.2 1.2 99 chr2L 19901013 intron sick + chr2L 19901062 intron sick + chr2L 19901112 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-233 224 chr2L 19901487 19901520 chr2L 19901590 19901623 6 103 0.5 1.0 0.8 3.3 136 chr2L 19901487 intron sick + chr2L 19901555 intron sick + chr2L 19901623 intron sick + chr2L_6_19900001 chr2L_19900001 RAL-233 225 chr2L 19948865 19948896 chr2L 19948944 19948976 10 80 1.5 3.0 2.2 3.1 111 chr2L 19948865 intron sick + chr2L 19948920 intron sick + chr2L 19948976 intron sick + chr2L_10_19945001 chr2L_19945001 RAL-233 226 chr2L 20041434 20041460 chr2L 20041519 20041545 12 85 1.5 5.5 3.5 2.7 111 chr2L 20041434 intron sNPF + chr2L 20041490 intron sNPF + chr2L 20041545 intron sNPF + chr2L_12_20040001 chr2L_20040001 RAL-233 227 chr2L 20296509 20296539 chr2L 20296590 20296620 10 81 1.0 2.5 1.8 3.6 111 chr2L 20296509 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-233 228 chr2L 20395482 20395508 chr2L 20395560 20395566 10 76 2.0 3.0 2.5 2.9 84 chr2L 20395482 intron CG10947 - chr2L 20395524 intron CG10947 - chr2L 20395566 intron CG10947 - chr2L_10_20395001 chr2L_20395001 RAL-233 229 chr2L 20568663 20568680 chr2L 20569053 20569070 X-element 4 390 1.0 0.5 0.8 2.2 407 chr2L 20568663 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-233 230 chr2L 20576219 20576236 chr2L 20583687 20583704 blood 4 7467 4.0 1.0 2.5 1.1 7485 chr2L 20576219 intergenic CR45347 + chr2L 20579962 intergenic not near genes chr2L 20583704 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-233 231 chr2L 20623922 20623945 chr2L 20623997 20624024 4 78 0.5 3.5 2.0 1.3 102 chr2L 20623922 intron CR44909 - chr2L 20623973 intron CR44909 - chr2L 20624024 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-233 232 chr2L 20639515 20639530 chr2L 20639782 20639806 INE-1 6 274 0.5 3.0 1.8 2.1 291 chr2L 20639515 intergenic not near genes chr2L 20639660 intergenic CG31680 + chr2L 20639806 intergenic CG31680 + chr2L_6_20635001 chr2L_20635001 RAL-233 233 chr2L 20819112 20819132 chr2L 20819196 20819215 4 83 2.0 0.5 1.2 1.8 103 chr2L 20819112 intergenic not near genes chr2L 20819164 intergenic not near genes chr2L 20819215 intergenic not near genes chr2L_4_20815001 chr2L_20815001 RAL-233 234 chr2L 20821509 20821522 chr2L 20821657 20821670 5 148 3.0 6.0 4.5 0.9 161 chr2L 20821509 intergenic not near genes chr2L 20821590 intergenic not near genes chr2L 20821670 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-233 235 chr2L 20840033 20840042 chr2L 20840245 20840252 4 211 2.0 2.5 2.2 1.2 219 chr2L 20840033 intergenic not near genes chr2L 20840142 intergenic not near genes chr2L 20840252 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-233 236 chr2L 20840044 20840054 chr2L 20840241 20840266 4 208 2.0 2.5 2.2 1.2 222 chr2L 20840044 intergenic not near genes chr2L 20840155 intergenic not near genes chr2L 20840266 intergenic CG31676 + chr2L_4_20840001 chr2L_20840001 RAL-233 237 chr2L 20976644 20976675 chr2L 20981459 20981490 X-element 4 4814 0.5 0.5 0.5 2.7 4846 chr2L 20976644 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981490 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-233 238 chr2L 20991036 20991068 chr2L 20991114 20991145 4 78 1.0 1.0 1.0 2.0 109 chr2L 20991036 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991145 intron CG42238 - chr2L_4_20990001 chr2L_20990001 RAL-233 239 chr2L 21020274 21020305 chr2L 21023950 21023982 NOF 7 3676 0.5 1.0 0.8 3.9 3708 chr2L 21020274 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023982 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-233 240 chr2L 21041141 21041165 chr2L 21049399 21049419 Tirant 9 8260 1.0 2.0 1.5 3.6 8278 chr2L 21041141 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049419 intron CG42238 - chr2L_9_21045001 chr2L_21045001 RAL-233 241 chr2L 21234429 21234452 chr2L 21234577 21234601 7 149 2.5 2.0 2.2 2.2 172 chr2L 21234429 intron CG31626 - chr2L 21234515 intron CG31626 - chr2L 21234601 intron CG31626 - chr2L_7_21230001 chr2L_21230001 RAL-233 242 chr2L 21286604 21286635 chr2L 21286682 21286712 7 78 1.0 0.5 0.8 3.9 108 chr2L 21286604 exon Mio - chr2L 21286658 intron Mio - chr2L 21286712 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-233 243 chr2L 21819336 21819359 chr2L 21819422 21819447 6 87 2.5 2.5 2.5 1.7 111 chr2L 21819336 intergenic CR44786 + chr2L 21819392 intergenic CR44786 + chr2L 21819447 intergenic CR44786 + chr2L_6_21815001 chr2L_21815001 RAL-233 244 chr2L 21953793 21953813 chr2L 21954694 21954714 6 901 15.5 22.5 19.0 0.3 921 chr2L 21953793 intergenic not near genes chr2L 21954254 intergenic not near genes chr2L 21954714 intergenic not near genes chr2L_6_21950001 chr2L_21950001 RAL-233 245 chr2L 21981695 21981704 chr2L 21990846 21990869 roo 4 9160 3.0 6.5 4.8 0.7 9174 chr2L 21981695 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990869 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-233 246 chr2L 22215916 22215924 chr2L 22216002 22216010 6 86 3.5 1.0 2.2 1.9 94 chr2L 22215916 intergenic not near genes chr2L 22215963 intergenic not near genes chr2L 22216010 intergenic not near genes chr2L_6_22215001 chr2L_22215001 RAL-233 247 chr2R 1082370 1082385 chr2R 1087130 1087161 Doc 5 4767 2.0 2.5 2.2 1.6 4791 chr2R 1082370 intron rl + chr2R 1084766 intron rl + chr2R 1087161 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-233 248 chr2R 1513962 1513970 chr2R 1514105 1514123 4 150 42.0 39.5 40.8 0.1 161 chr2R 1513962 3` UTR Maf1 - chr2R 1514042 3` UTR Maf1 - chr2R 1514123 3` UTR Maf1 - chr2R_4_1510001 chr2R_1510001 RAL-233 249 chr2R 3291929 3291957 chr2R 3915098 3915126 4 623169 9.5 11.0 10.2 0.4 623197 chr2R 3291929 intergenic not near genes chr2R 3603528 intergenic not near genes chr2R 3915126 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-233 250 chr2R 4604567 4604581 chr2R 4604646 4604660 4 78 1.0 3.5 2.2 1.2 93 chr2R 4604567 intron p120ctn + chr2R 4604614 intron p120ctn + chr2R 4604660 intron p120ctn + chr2R_4_4600001 chr2R_4600001 RAL-233 251 chr2R 4624644 4624668 chr2R 4626549 4626573 Bica 5 1905 1.5 2.5 2.0 1.7 1929 chr2R 4624644 intergenic not near genes chr2R 4625608 intergenic not near genes chr2R 4626573 intergenic not near genes chr2R_5_4625001 chr2R_4625001 RAL-233 252 chr2R 4634158 4634176 chr2R 4634237 4634255 4 78 0.5 3.0 1.8 1.4 97 chr2R 4634158 intergenic not near genes chr2R 4634206 intergenic not near genes chr2R 4634255 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-233 253 chr2R 5008994 5009024 chr2R 5009302 5009312 12 300 2.0 2.5 2.2 3.8 318 chr2R 5008994 intron Ir41a + chr2R 5009153 intron Ir41a + chr2R 5009312 intron Ir41a + chr2R_12_5005001 chr2R_5005001 RAL-233 254 chr2R 5188718 5188734 chr2R 5189400 5189405 gypsy8 6 685 1.0 2.5 1.8 2.1 687 chr2R 5188718 intron Nipped-A - chr2R 5189062 intron Nipped-A - chr2R 5189405 intron Nipped-A - chr2R_6_5185001 chr2R_5185001 RAL-233 255 chr2R 5209791 5209809 chr2R 5210324 5210342 5 530 1.0 1.0 1.0 2.5 551 chr2R 5209791 intron Nipped-A - chr2R 5210066 intron Nipped-A - chr2R 5210342 intron Nipped-A - chr2R_5_5210001 chr2R_5210001 RAL-233 256 chr2R 5267603 5267628 chr2R 5267690 5267715 8 86 2.5 0.5 1.5 3.2 112 chr2R 5267603 intron d4 + chr2R 5267659 intron d4 + chr2R 5267715 intron d4 + chr2R_8_5265001 chr2R_5265001 RAL-233 257 chr2R 5472377 5472390 chr2R 5472470 5472481 4 92 0.0 4.5 2.2 1.2 104 chr2R 5472377 intron CG30440 - chr2R 5472429 intron CG30440 - chr2R 5472481 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-233 258 chr2R 5491665 5491698 chr2R 5491758 5491791 10 91 1.5 2.0 1.8 3.6 126 chr2R 5491665 intron CG30440 - chr2R 5491728 intron CG30440 - chr2R 5491791 intron CG30440 - chr2R_10_5490001 chr2R_5490001 RAL-233 259 chr2R 5664280 5664307 chr2R 5664360 5664387 11 80 2.0 3.0 2.5 3.1 107 chr2R 5664280 5` UTR CR45472 + chr2R 5664334 intron CR45472 + chr2R 5664387 intron CR45472 + chr2R_11_5660001 chr2R_5660001 RAL-233 260 chr2R 5772527 5772745 chr2R 5772603 5772858 6 92 0.0 1.0 0.5 4.0 331 chr2R 5772527 3` UTR Gp210 + chr2R 5772692 3` UTR Gp210 + chr2R 5772858 3` UTR Gp210 + chr2R_6_5770001 chr2R_5770001 RAL-233 261 chr2R 5868062 5868095 chr2R 5868182 5868215 12 116 3.5 2.5 3.0 3.0 153 chr2R 5868062 intergenic not near genes chr2R 5868138 intergenic not near genes chr2R 5868215 intergenic not near genes chr2R_12_5865001 chr2R_5865001 RAL-233 262 chr2R 6168201 6168220 chr2R 6168283 6168302 4 82 0.5 1.0 0.8 2.2 101 chr2R 6168201 intron EcR - chr2R 6168252 intron EcR - chr2R 6168302 intron EcR - chr2R_4_6165001 chr2R_6165001 RAL-233 263 chr2R 6538378 6538410 chr2R 6538456 6538488 5 78 1.5 0.5 1.0 2.5 110 chr2R 6538378 intron jing + chr2R 6538433 intron jing + chr2R 6538488 intron jing + chr2R_5_6535001 chr2R_6535001 RAL-233 264 chr2R 6822404 6822431 chr2R 6822480 6822482 9 70 6.5 4.0 5.2 1.5 78 chr2R 6822404 3` UTR CR44442 - chr2R 6822443 3` UTR CR44442 - chr2R 6822482 3` UTR CR44442 - chr2R_9_6820001 chr2R_6820001 RAL-233 265 chr2R 6869703 6869724 chr2R 6869870 6869887 4 165 1.0 1.0 1.0 2.0 184 chr2R 6869703 intron coro - chr2R 6869795 intron coro - chr2R 6869887 intron coro - chr2R_4_6865001 chr2R_6865001 RAL-233 266 chr2R 6964298 6964310 chr2R 6964375 6964387 4 77 0.0 1.5 0.8 2.2 89 chr2R 6964298 intron,intron mim -,CheB42c - chr2R 6964342 intron,intron mim -,CheB42c - chr2R 6964387 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-233 267 chr2R 7139947 7139955 chr2R 7141433 7141447 hopper2 4 1488 0.5 10.0 5.2 0.6 1500 chr2R 7139947 intergenic not near genes chr2R 7140697 intergenic not near genes chr2R 7141447 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-233 268 chr2R 7235831 7235841 chr2R 7240909 7240933 jockey 5 5088 4.5 3.5 4.0 1.0 5102 chr2R 7235831 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240933 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-233 269 chr2R 7272269 7272282 chr2R 7272351 7272364 4 80 0.0 2.0 1.0 2.0 95 chr2R 7272269 intergenic Br140 - chr2R 7272316 3` UTR Br140 - chr2R 7272364 3` UTR Br140 - chr2R_4_7270001 chr2R_7270001 RAL-233 270 chr2R 7551685 7551719 chr2R 7551776 7551809 4 87 0.5 2.0 1.2 1.8 124 chr2R 7551685 intron Corin + chr2R 7551747 intron Corin + chr2R 7551809 intron Corin + chr2R_4_7550001 chr2R_7550001 RAL-233 271 chr2R 7608411 7608436 chr2R 7613614 7613637 I-element 11 5202 2.5 2.5 2.5 3.1 5226 chr2R 7608411 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_11_7610001 chr2R_7610001 RAL-233 272 chr2R 7697145 7697152 chr2R 7697269 7697285 4 128 3.0 2.0 2.5 1.1 140 chr2R 7697145 intron CG1399 - chr2R 7697215 intron CG1399 - chr2R 7697285 intron CG1399 - chr2R_4_7695001 chr2R_7695001 RAL-233 273 chr2R 7714081 7714116 chr2R 7714157 7714192 4 76 0.5 0.0 0.2 3.3 111 chr2R 7714081 exon CG1942 + chr2R 7714136 3` UTR CG1942 + chr2R 7714192 intergenic CG1942 + chr2R_4_7710001 chr2R_7710001 RAL-233 274 chr2R 7742780 7742788 chr2R 7742855 7742871 4 81 3.5 4.5 4.0 0.8 91 chr2R 7742780 intron,intron CG30497 -,CG45093 - chr2R 7742826 intron,intron CG30497 -,CG45093 - chr2R 7742871 intron,intron CG30497 -,CG45093 - chr2R_4_7740001 chr2R_7740001 RAL-233 275 chr2R 7743481 7743502 chr2R 7743562 7743583 5 81 1.5 1.0 1.2 2.3 102 chr2R 7743481 intron,intron CG30497 -,CG45093 - chr2R 7743532 intron,intron CG30497 -,CG45093 - chr2R 7743583 intron,intron CG30497 -,CG45093 - chr2R_5_7740001 chr2R_7740001 RAL-233 276 chr2R 7790121 7790142 chr2R 7790412 7790432 5 290 2.0 3.5 2.8 1.3 311 chr2R 7790121 intergenic CG12825 +,CG12824 + chr2R 7790276 intergenic CG12824 +,CG12825 + chr2R 7790432 exon CG12824 + chr2R_5_7790001 chr2R_7790001 RAL-233 277 chr2R 7812247 7812265 chr2R 7812323 7812341 4 76 0.5 3.0 1.8 1.4 94 chr2R 7812247 intergenic CG1550 -,CG1882 + chr2R 7812294 intergenic CG1882 +,CG1550 - chr2R 7812341 intergenic CG1882 +,CG1550 - chr2R_4_7810001 chr2R_7810001 RAL-233 278 chr2R 7815673 7815697 chr2R 7822142 7822163 Burdock 7 6468 3.0 2.5 2.8 1.8 6490 chr2R 7815673 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822163 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-233 279 chr2R 7869189 7869216 chr2R 7873975 7874002 Doc 7 4785 2.5 4.0 3.2 1.7 4813 chr2R 7869189 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874002 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-233 280 chr2R 8157901 8157911 chr2R 8157989 8157999 5 88 3.0 2.0 2.5 1.4 98 chr2R 8157901 5` UTR CR44068 + chr2R 8157950 5` UTR CR44068 + chr2R 8157999 5` UTR CR44068 + chr2R_5_8155001 chr2R_8155001 RAL-233 281 chr2R 8330871 8330893 chr2R 8331348 8331379 roo 5 484 2.5 3.0 2.8 1.3 508 chr2R 8330871 intron pdm3 + chr2R 8331125 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-233 282 chr2R 8408839 8408861 chr2R 8408967 8408989 4 128 3.5 2.5 3.0 1.0 150 chr2R 8408839 intron CG2121 - chr2R 8408914 intron CG2121 - chr2R 8408989 intron CG2121 - chr2R_4_8405001 chr2R_8405001 RAL-233 283 chr2R 8414290 8414316 chr2R 8414371 8414399 10 80 4.0 3.0 3.5 2.2 109 chr2R 8414290 intergenic not near genes chr2R 8414344 intergenic not near genes chr2R 8414399 intergenic not near genes chr2R_10_8410001 chr2R_8410001 RAL-233 284 chr2R 8535786 8535803 chr2R 8535890 8535908 4 105 0.5 2.0 1.2 1.8 122 chr2R 8535786 intergenic not near genes chr2R 8535847 intergenic not near genes chr2R 8535908 intergenic not near genes chr2R_4_8535001 chr2R_8535001 RAL-233 285 chr2R 8566030 8566067 chr2R 8566982 8567013 1360 4 945 2.0 0.0 1.0 2.0 983 chr2R 8566030 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567013 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-233 286 chr2R 8615773 8615805 chr2R 8615885 8615918 9 111 1.5 1.0 1.2 4.1 145 chr2R 8615773 intron Cirl + chr2R 8615846 intron Cirl + chr2R 8615918 5` UTR Cirl + chr2R_9_8615001 chr2R_8615001 RAL-233 287 chr2R 8691124 8691147 chr2R 8691593 8691606 5 467 2.0 2.5 2.2 1.6 482 chr2R 8691124 intergenic Jon44E + chr2R 8691365 intergenic Jon44E + chr2R 8691606 exon Jon44E + chr2R_5_8690001 chr2R_8690001 RAL-233 288 chr2R 8722778 8722790 chr2R 8723003 8723031 pogo 5 238 3.5 2.5 3.0 1.2 253 chr2R 8722778 intron CG14767 - chr2R 8722904 intron CG14767 - chr2R 8723031 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-233 289 chr2R 8761230 8761255 chr2R 8761324 8761349 4 94 1.0 0.5 0.8 2.2 119 chr2R 8761230 intergenic not near genes chr2R 8761290 intergenic not near genes chr2R 8761349 intergenic not near genes chr2R_4_8760001 chr2R_8760001 RAL-233 290 chr2R 9052709 9052729 chr2R 9052787 9052810 4 80 0.0 3.5 1.8 1.4 101 chr2R 9052709 intron CG13743 - chr2R 9052760 intron CG13743 - chr2R 9052810 intron CG13743 - chr2R_4_9050001 chr2R_9050001 RAL-233 291 chr2R 9053374 9053383 chr2R 9053546 9053555 4 172 0.5 0.0 0.2 3.3 181 chr2R 9053374 intron CG13743 - chr2R 9053464 intron CG13743 - chr2R 9053555 intron CG13743 - chr2R_4_9050001 chr2R_9050001 RAL-233 292 chr2R 9223740 9223766 chr2R 9223822 9223852 8 83 3.0 1.5 2.2 2.5 112 chr2R 9223740 intergenic not near genes chr2R 9223796 intergenic not near genes chr2R 9223852 intergenic not near genes chr2R_8_9220001 chr2R_9220001 RAL-233 293 chr2R 9276427 9276436 chr2R 9276533 9276557 5 118 3.0 4.5 3.8 1.0 130 chr2R 9276427 intron Pkn - chr2R 9276492 intron Pkn - chr2R 9276557 intron Pkn - chr2R_5_9275001 chr2R_9275001 RAL-233 294 chr2R 9368128 9368153 chr2R 9368204 9368224 7 73 3.0 0.5 1.8 2.5 96 chr2R 9368128 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368224 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-233 295 chr2R 9407825 9407860 chr2R 9407917 9407953 12 92 3.0 2.5 2.8 3.2 128 chr2R 9407825 intron wun - chr2R 9407889 intron wun - chr2R 9407953 intron wun - chr2R_12_9405001 chr2R_9405001 RAL-233 296 chr2R 9510667 9510689 chr2R 9510782 9510805 8 116 1.0 1.5 1.2 3.6 138 chr2R 9510667 intron brp + chr2R 9510736 intron brp + chr2R 9510805 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-233 297 chr2R 9538714 9538733 chr2R 9538798 9538817 4 84 1.0 2.0 1.5 1.6 103 chr2R 9538714 3` UTR brp + chr2R 9538766 3` UTR brp + chr2R 9538817 3` UTR brp + chr2R_4_9535001 chr2R_9535001 RAL-233 298 chr2R 9699412 9699437 chr2R 9699497 9699520 5 79 6.5 0.5 3.5 1.1 108 chr2R 9699412 intergenic not near genes chr2R 9699466 intergenic not near genes chr2R 9699520 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-233 299 chr2R 9871038 9871071 chr2R 9871524 9871554 roo 4 481 1.0 2.0 1.5 1.6 516 chr2R 9871038 intron cbx - chr2R 9871296 intron cbx - chr2R 9871554 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-233 300 chr2R 9945437 9945470 chr2R 9945630 9945665 BS 6 191 2.0 2.0 2.0 2.0 228 chr2R 9945437 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-233 301 chr2R 10005856 10005872 chr2R 10007017 10007037 1360 8 1163 5.0 3.0 4.0 1.6 1181 chr2R 10005856 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007037 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-233 302 chr2R 10197384 10197418 chr2R 10197469 10197504 6 82 0.5 1.0 0.8 3.3 120 chr2R 10197384 3` UTR CG34221 - chr2R 10197444 3` UTR CG34221 - chr2R 10197504 3` UTR CG34221 - chr2R_6_10195001 chr2R_10195001 RAL-233 303 chr2R 10352676 10352702 chr2R 10352753 10352779 5 77 1.0 0.5 0.8 2.8 103 chr2R 10352676 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352779 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-233 304 chr2R 10429029 10429045 chr2R 10429103 10429119 5 75 1.0 2.0 1.5 2.0 90 chr2R 10429029 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429119 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-233 305 chr2R 10454096 10454119 chr2R 10454173 10454196 5 77 5.0 0.5 2.8 1.3 100 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454146 intron,intron Galphao +,Cyp49a1 - chr2R 10454196 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-233 306 chr2R 10477038 10477062 chr2R 10477144 10477169 6 107 3.5 3.0 3.2 1.4 131 chr2R 10477038 intron whd - chr2R 10477104 intron whd - chr2R 10477169 intron whd - chr2R_6_10475001 chr2R_10475001 RAL-233 307 chr2R 10525280 10525304 chr2R 10525367 10525390 4 79 1.5 3.0 2.2 1.2 110 chr2R 10525280 intron lola - chr2R 10525335 intron lola - chr2R 10525390 intron lola - chr2R_4_10525001 chr2R_10525001 RAL-233 308 chr2R 10948025 10948062 chr2R 10955576 10955605 17.6 15 7546 1.5 1.5 1.5 6.0 7580 chr2R 10948025 intergenic not near genes chr2R 10951815 intergenic not near genes chr2R 10955605 intergenic not near genes chr2R_15_10950001 chr2R_10950001 RAL-233 309 chr2R 11207816 11207838 chr2R 11208009 11208031 BS 5 193 3.0 0.5 1.8 1.8 215 chr2R 11207816 intron shn + chr2R 11207924 intron shn + chr2R 11208031 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-233 310 chr2R 11277793 11277818 chr2R 11277880 11277884 6 81 1.0 1.5 1.2 2.7 91 chr2R 11277793 intergenic Cpr47Eg - chr2R 11277838 intergenic Cpr47Eg - chr2R 11277884 intergenic Cpr47Eg - chr2R_6_11275001 chr2R_11275001 RAL-233 311 chr2R 11292967 11292995 chr2R 11293046 11293074 11 76 2.5 0.0 1.2 5.0 107 chr2R 11292967 exon,3` UTR dare -,CG30033 + chr2R 11293020 5` UTR,3` UTR dare -,CG30033 + chr2R 11293074 5` UTR,3` UTR dare -,CG30033 + chr2R_11_11290001 chr2R_11290001 RAL-233 312 chr2R 11472654 11472658 chr2R 11473851 11473855 pogo 4 1197 4.0 1.0 2.5 1.1 1201 chr2R 11472654 intergenic not near genes chr2R 11473254 intergenic not near genes chr2R 11473855 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-233 313 chr2R 11472663 11472680 chr2R 11473849 11473877 pogo 7 1195 0.0 1.0 0.5 4.7 1214 chr2R 11472663 intergenic not near genes chr2R 11473270 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-233 314 chr2R 11487401 11487421 chr2R 11487482 11487501 7 80 2.5 1.5 2.0 2.3 100 chr2R 11487401 intron inv + chr2R 11487451 intron inv + chr2R 11487501 intron inv + chr2R_7_11485001 chr2R_11485001 RAL-233 315 chr2R 8518785 8518788 chr2R 12066179 12066185 6 3547394 4.5 7.5 6.0 0.9 3547400 chr2R 8518785 intron mtt - chr2R 10292485 intron CAP + chr2R 12066185 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-233 316 chr2R 8518773 8518791 chr2R 12066186 12066195 4 3547402 4.5 7.0 5.8 0.6 3547422 chr2R 8518773 intron mtt - chr2R 10292484 intron CAP + chr2R 12066195 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-233 317 chr2R 12146470 12146503 chr2R 12147590 12147605 15 1116 19.0 23.5 21.2 0.7 1135 chr2R 12146470 intron,3` UTR Hen1 +,CG8878 - chr2R 12147038 intron,exon Hen1 +,CG8878 - chr2R 12147605 intron,exon Hen1 +,CG8878 - chr2R_15_12145001 chr2R_12145001 RAL-233 318 chr2R 12145924 12145946 chr2R 12148619 12148639 4 2698 25.0 28.0 26.5 0.1 2715 chr2R 12145924 exon Hen1 + chr2R 12147282 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-233 319 chr2R 12187471 12187507 chr2R 12190093 12190123 30 2623 91.0 43.0 67.0 0.4 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_30_12185001 chr2R_12185001 RAL-233 320 chr2R 12217587 12217596 chr2R 12217664 12217677 4 80 2.5 1.0 1.8 1.4 90 chr2R 12217587 intergenic not near genes chr2R 12217632 intergenic not near genes chr2R 12217677 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-233 321 chr2R 12301876 12301903 chr2R 12301953 12301980 8 76 2.0 3.5 2.8 2.1 104 chr2R 12301876 intron CG8850 - chr2R 12301928 intron CG8850 - chr2R 12301980 intron CG8850 - chr2R_8_12300001 chr2R_12300001 RAL-233 322 chr2R 12501696 12501722 chr2R 12503857 12503884 Rt1c 5 2160 4.5 4.5 4.5 0.9 2188 chr2R 12501696 intron fdl - chr2R 12502790 intron fdl - chr2R 12503884 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-233 323 chr2R 12610722 12610741 chr2R 12610817 12610836 6 95 3.0 1.0 2.0 2.0 114 chr2R 12610722 intron Amph + chr2R 12610779 intron Amph + chr2R 12610836 intron Amph + chr2R_6_12610001 chr2R_12610001 RAL-233 324 chr2R 12665404 12665426 chr2R 12665480 12665509 7 82 2.5 1.5 2.0 2.3 105 chr2R 12665404 intron nemy - chr2R 12665456 intron nemy - chr2R 12665509 intron nemy - chr2R_7_12665001 chr2R_12665001 RAL-233 325 chr2R 13136842 13136868 chr2R 13141638 13141666 Doc 11 4796 4.5 3.5 4.0 2.2 4824 chr2R 13136842 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_11_13135001 chr2R_13135001 RAL-233 326 chr2R 13574398 13574425 chr2R 13574479 13574506 4 80 3.0 1.5 2.2 1.2 108 chr2R 13574398 intergenic CG42808 - chr2R 13574452 intergenic CG42808 -,CR44365 + chr2R 13574506 intergenic CG42808 -,CR44365 + chr2R_4_13570001 chr2R_13570001 RAL-233 327 chr2R 13580511 13580524 chr2R 13580843 13580874 jockey 7 341 0.5 2.0 1.2 3.2 363 chr2R 13580511 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580874 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-233 328 chr2R 13663608 13663619 chr2R 13663686 13663696 5 78 2.5 4.0 3.2 1.2 88 chr2R 13663608 intron fas + chr2R 13663652 intron fas + chr2R 13663696 intron fas + chr2R_5_13660001 chr2R_13660001 RAL-233 329 chr2R 13663624 13663639 chr2R 13663683 13663713 9 74 1.5 3.5 2.5 2.6 89 chr2R 13663624 intron fas + chr2R 13663668 intron fas + chr2R 13663713 intron fas + chr2R_9_13660001 chr2R_13660001 RAL-233 330 chr2R 13692320 13692347 chr2R 13692404 13692431 6 84 1.5 1.5 1.5 2.4 111 chr2R 13692320 intron,intron fas +,CG6220 - chr2R 13692376 intron,intron fas +,CG6220 - chr2R 13692431 intron,intron fas +,CG6220 - chr2R_6_13690001 chr2R_13690001 RAL-233 331 chr2R 13854012 13854013 chr2R 13855612 13855640 4 1616 20.5 36.5 28.5 0.1 1628 chr2R 13854012 intron CG6543 - chr2R 13854826 exon,5` UTR CG6553 -,CR44367 + chr2R 13855640 exon,5` UTR CG6553 -,CR44367 + chr2R_4_13850001 chr2R_13850001 RAL-233 332 chr2R 14055315 14055340 chr2R 14055445 14055465 5 123 3.0 2.5 2.8 1.3 150 chr2R 14055315 intron mam + chr2R 14055390 intron mam + chr2R 14055465 intron mam + chr2R_5_14055001 chr2R_14055001 RAL-233 333 chr2R 14266760 14266786 chr2R 14266836 14266860 9 74 1.5 0.0 0.8 5.0 100 chr2R 14266760 intron CG8547 - chr2R 14266810 intron CG8547 - chr2R 14266860 intron CG8547 - chr2R_9_14265001 chr2R_14265001 RAL-233 334 chr2R 14393875 14393893 chr2R 14393960 14393978 6 84 1.0 4.0 2.5 1.7 103 chr2R 14393875 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14393978 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-233 335 chr2R 14394239 14394247 chr2R 14399028 14399035 Doc 4 4789 1.0 0.5 0.8 2.2 4796 chr2R 14394239 intergenic not near genes chr2R 14396637 intergenic not near genes chr2R 14399035 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-233 336 chr2R 14467312 14467323 chr2R 14476470 14476481 roo 6 9156 3.0 2.5 2.8 1.6 9169 chr2R 14467312 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476481 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-233 337 chr2R 14497390 14497416 chr2R 14498556 14498582 1360 5 1166 0.0 0.5 0.2 4.2 1192 chr2R 14497390 3` UTR Cpsf160 - chr2R 14497986 intron Cpsf160 - chr2R 14498582 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-233 338 chr2R 14530771 14530779 chr2R 14530849 14530856 4 78 3.0 4.5 3.8 0.8 85 chr2R 14530771 intron ttv + chr2R 14530814 intron ttv + chr2R 14530856 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-233 339 chr2R 14538962 14538990 chr2R 14539038 14539065 6 73 2.5 4.0 3.2 1.4 103 chr2R 14538962 intron ttv + chr2R 14539014 intron ttv + chr2R 14539065 intron ttv + chr2R_6_14535001 chr2R_14535001 RAL-233 340 chr2R 14556169 14556192 chr2R 14556248 14556271 9 78 1.5 1.5 1.5 3.6 102 chr2R 14556169 intron ttv + chr2R 14556220 intron ttv + chr2R 14556271 intron ttv + chr2R_9_14555001 chr2R_14555001 RAL-233 341 chr2R 14566446 14566471 chr2R 14566532 14566558 7 87 3.0 1.5 2.2 2.2 112 chr2R 14566446 intron ttv + chr2R 14566502 intron ttv + chr2R 14566558 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-233 342 chr2R 14653882 14653916 chr2R 14653967 14653992 8 83 1.5 1.5 1.5 3.2 110 chr2R 14653882 intergenic not near genes chr2R 14653937 intergenic not near genes chr2R 14653992 intergenic not near genes chr2R_8_14650001 chr2R_14650001 RAL-233 343 chr2R 14922151 14922164 chr2R 14922227 14922240 5 76 1.5 2.5 2.0 1.7 89 chr2R 14922151 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922240 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-233 344 chr2R 14954746 14954782 chr2R 14954822 14954858 5 76 0.5 1.5 1.0 2.5 112 chr2R 14954746 intron aPKC - chr2R 14954802 intron aPKC - chr2R 14954858 intron aPKC - chr2R_5_14950001 chr2R_14950001 RAL-233 345 chr2R 14979762 14979789 chr2R 14979838 14979865 7 76 2.5 1.0 1.8 2.5 103 chr2R 14979762 3` UTR ckn + chr2R 14979814 3` UTR ckn + chr2R 14979865 3` UTR ckn + chr2R_7_14975001 chr2R_14975001 RAL-233 346 chr2R 15004729 15004761 chr2R 15005056 15005090 jockey 6 329 2.0 1.5 1.8 2.1 361 chr2R 15004729 intergenic not near genes chr2R 15004910 intergenic not near genes chr2R 15005090 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-233 347 chr2R 15015456 15015489 chr2R 15022879 15022913 mdg1 9 7424 1.0 3.0 2.0 3.0 7457 chr2R 15015456 intron hbs + chr2R 15019184 intron hbs + chr2R 15022913 intron hbs + chr2R_9_15015001 chr2R_15015001 RAL-233 348 chr2R 15065626 15065647 chr2R 15065692 15065725 7 72 1.5 1.0 1.2 3.2 99 chr2R 15065626 intergenic not near genes chr2R 15065676 intergenic not near genes chr2R 15065725 intergenic not near genes chr2R_7_15065001 chr2R_15065001 RAL-233 349 chr2R 15119318 15119349 chr2R 15127799 15127830 Tirant 7 8478 2.0 2.5 2.2 2.2 8512 chr2R 15119318 intron chn + chr2R 15123574 intron chn + chr2R 15127830 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-233 350 chr2R 15753816 15753841 chr2R 15753905 15753930 6 89 3.5 1.5 2.5 1.7 114 chr2R 15753816 intron CG30089 + chr2R 15753873 intron CG30089 + chr2R 15753930 intron CG30089 + chr2R_6_15750001 chr2R_15750001 RAL-233 351 chr2R 15833520 15833554 chr2R 15833607 15833636 9 85 4.0 1.5 2.8 2.4 116 chr2R 15833520 intron,intron tun +,Poxn - chr2R 15833578 intron,intron tun +,Poxn - chr2R 15833636 intron,intron tun +,Poxn - chr2R_9_15830001 chr2R_15830001 RAL-233 352 chr2R 16466909 16466932 chr2R 16467259 16467280 5 350 2.5 1.0 1.8 1.8 371 chr2R 16466909 exon CheB53a + chr2R 16467094 exon CheB53a + chr2R 16467280 exon CheB53a + chr2R_5_16465001 chr2R_16465001 RAL-233 353 chr2R 16547017 16547023 chr2R 16547084 16547103 4 76 0.0 0.0 0.0 4.0 86 chr2R 16547017 intergenic not near genes chr2R 16547060 intergenic not near genes chr2R 16547103 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-233 354 chr2R 16617066 16617088 chr2R 16617145 16617167 4 79 1.5 1.0 1.2 1.8 101 chr2R 16617066 intron CG5065 + chr2R 16617116 intron CG5065 + chr2R 16617167 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-233 355 chr2R 16705233 16705258 chr2R 16705361 16705386 4 128 3.5 2.5 3.0 1.0 153 chr2R 16705233 intron CG30463 - chr2R 16705310 intron CG30463 - chr2R 16705386 intron CG30463 - chr2R_4_16705001 chr2R_16705001 RAL-233 356 chr2R 16808029 16808055 chr2R 16808133 16808159 8 104 0.5 1.0 0.8 4.4 130 chr2R 16808029 intergenic not near genes chr2R 16808094 intergenic not near genes chr2R 16808159 intergenic not near genes chr2R_8_16805001 chr2R_16805001 RAL-233 357 chr2R 17236507 17236539 chr2R 17241711 17241743 copia 5 5204 0.0 1.5 0.8 2.8 5236 chr2R 17236507 intron mbl + chr2R 17239125 intron mbl + chr2R 17241743 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-233 358 chr2R 17250904 17250936 chr2R 17250985 17251016 14 78 1.5 3.0 2.2 4.4 112 chr2R 17250904 intron mbl + chr2R 17250960 intron mbl + chr2R 17251016 intron mbl + chr2R_14_17250001 chr2R_17250001 RAL-233 359 chr2R 17381588 17381612 chr2R 17381676 17381696 5 87 1.0 1.0 1.0 2.5 108 chr2R 17381588 intergenic not near genes chr2R 17381642 intergenic not near genes chr2R 17381696 intergenic not near genes chr2R_5_17380001 chr2R_17380001 RAL-233 360 chr2R 17547573 17547599 chr2R 17547653 17547679 9 80 1.0 2.5 1.8 3.2 106 chr2R 17547573 intergenic RpL18A -,MESR4 + chr2R 17547626 intergenic MESR4 +,RpL18A - chr2R 17547679 intergenic MESR4 +,RpL18A - chr2R_9_17545001 chr2R_17545001 RAL-233 361 chr2R 17764429 17764454 chr2R 17764532 17764557 7 102 0.5 2.0 1.2 3.2 128 chr2R 17764429 3` UTR CG5009 + chr2R 17764493 3` UTR CG5009 + chr2R 17764557 intergenic CG5009 +,OstDelta - chr2R_7_17760001 chr2R_17760001 RAL-233 362 chr2R 17784025 17784053 chr2R 17784266 17784294 pogo 4 241 2.0 7.0 4.5 0.7 269 chr2R 17784025 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784294 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-233 363 chr2R 17885116 17885131 chr2R 17885211 17885226 4 94 0.5 1.5 1.0 2.0 110 chr2R 17885116 intron Elk + chr2R 17885171 intron Elk + chr2R 17885226 intron Elk + chr2R_4_17885001 chr2R_17885001 RAL-233 364 chr2R 17918173 17918187 chr2R 17918237 17918264 4 73 2.0 1.0 1.5 1.6 91 chr2R 17918173 intron Elk + chr2R 17918218 intron Elk + chr2R 17918264 intron Elk + chr2R_4_17915001 chr2R_17915001 RAL-233 365 chr2R 18127375 18127393 chr2R 18127493 18127511 5 119 1.5 2.5 2.0 1.7 136 chr2R 18127375 intron Spn55B + chr2R 18127443 intron Spn55B + chr2R 18127511 intron Spn55B + chr2R_5_18125001 chr2R_18125001 RAL-233 366 chr2R 18308282 18308309 chr2R 18308388 18308410 6 105 4.0 1.5 2.8 1.6 128 chr2R 18308282 intron sbb - chr2R 18308346 intron sbb - chr2R 18308410 intron sbb - chr2R_6_18305001 chr2R_18305001 RAL-233 367 chr2R 18322199 18322211 chr2R 18322283 18322295 4 84 6.0 1.5 3.8 0.8 96 chr2R 18322199 intron sbb - chr2R 18322247 intron sbb - chr2R 18322295 intron sbb - chr2R_4_18320001 chr2R_18320001 RAL-233 368 chr2R 18358387 18358416 chr2R 18372599 18372628 roo 4 14212 0.5 0.0 0.2 3.3 14241 chr2R 18358387 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372628 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-233 369 chr2R 18408289 18408303 chr2R 18408410 18408424 4 121 6.5 3.0 4.8 0.7 135 chr2R 18408289 exon GstE8 + chr2R 18408356 exon GstE8 + chr2R 18408424 exon GstE8 + chr2R_4_18405001 chr2R_18405001 RAL-233 370 chr2R 18519963 18519974 chr2R 18520025 18520048 6 71 1.0 4.5 2.8 1.6 85 chr2R 18519963 intron CG43066 + chr2R 18520006 intron CG43066 + chr2R 18520048 intron CG43066 + chr2R_6_18520001 chr2R_18520001 RAL-233 371 chr2R 18543075 18543110 chr2R 18543152 18543164 12 72 2.0 5.5 3.8 2.5 89 chr2R 18543075 intron Rgk2 + chr2R 18543120 intron Rgk2 + chr2R 18543164 intron Rgk2 + chr2R_12_18540001 chr2R_18540001 RAL-233 372 chr2R 18575803 18575825 chr2R 18581989 18582013 3S18 6 6184 0.0 2.5 1.2 2.7 6210 chr2R 18575803 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582013 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-233 373 chr2R 18590875 18590901 chr2R 18600027 18600052 roo 7 9148 1.0 4.0 2.5 2.0 9177 chr2R 18590875 intron GEFmeso - chr2R 18595464 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-233 374 chr2R 18692907 18692917 chr2R 18692993 18693003 4 86 4.0 2.0 3.0 1.0 96 chr2R 18692907 intron Sik3 + chr2R 18692955 intron Sik3 + chr2R 18693003 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-233 375 chr2R 18819057 18819069 chr2R 18819134 18819146 4 77 0.0 0.5 0.2 3.3 89 chr2R 18819057 intergenic Phb2 + chr2R 18819102 intergenic Phb2 + chr2R 18819146 intergenic Phb2 + chr2R_4_18815001 chr2R_18815001 RAL-233 376 chr2R 18855203 18855209 chr2R 18855280 18855286 4 78 5.0 4.0 4.5 0.7 83 chr2R 18855203 intergenic Jheh1 - chr2R 18855244 intergenic Jheh1 - chr2R 18855286 intergenic Jheh1 -,Jheh2 - chr2R_4_18855001 chr2R_18855001 RAL-233 377 chr2R 18855212 18855216 chr2R 18855266 18855295 5 69 2.5 1.5 2.0 1.7 83 chr2R 18855212 intergenic Jheh1 - chr2R 18855254 intergenic Jheh1 - chr2R 18855295 intergenic Jheh1 -,Jheh2 - chr2R_5_18855001 chr2R_18855001 RAL-233 378 chr2R 18880366 18880381 chr2R 18880448 18880464 5 83 0.0 2.5 1.2 2.3 98 chr2R 18880366 intron sano + chr2R 18880415 intron sano + chr2R 18880464 intron sano + chr2R_5_18880001 chr2R_18880001 RAL-233 379 chr2R 18926523 18926529 chr2R 18926610 18926616 4 86 1.5 3.5 2.5 1.1 93 chr2R 18926523 intron sano + chr2R 18926570 intron sano + chr2R 18926616 intron sano + chr2R_4_18925001 chr2R_18925001 RAL-233 380 chr2R 19014620 19014639 chr2R 19014700 19014718 6 79 0.0 3.0 1.5 2.4 98 chr2R 19014620 intergenic not near genes chr2R 19014669 intergenic not near genes chr2R 19014718 intergenic not near genes chr2R_6_19010001 chr2R_19010001 RAL-233 381 chr2R 19205342 19205361 chr2R 19205669 19205678 5 326 2.0 0.0 1.0 2.5 336 chr2R 19205342 intron hppy + chr2R 19205510 intron hppy + chr2R 19205678 intron hppy + chr2R_5_19205001 chr2R_19205001 RAL-233 382 chr2R 19221417 19221429 chr2R 19221570 19221582 5 153 4.5 4.0 4.2 1.0 165 chr2R 19221417 intron hppy + chr2R 19221500 intron hppy + chr2R 19221582 intron hppy + chr2R_5_19220001 chr2R_19220001 RAL-233 383 chr2R 19300963 19300995 chr2R 19301046 19301078 5 83 1.0 1.0 1.0 2.5 115 chr2R 19300963 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301078 intron Tab2 + chr2R_5_19300001 chr2R_19300001 RAL-233 384 chr2R 19327487 19327503 chr2R 19327765 19327784 4 280 2.5 3.5 3.0 1.0 297 chr2R 19327487 intron Rgk1 - chr2R 19327636 intron Rgk1 - chr2R 19327784 intron Rgk1 - chr2R_4_19325001 chr2R_19325001 RAL-233 385 chr2R 19388010 19388039 chr2R 19388107 19388139 11 99 2.0 1.5 1.8 3.9 129 chr2R 19388010 exon CG10081 + chr2R 19388074 exon CG10081 + chr2R 19388139 intron CG10081 + chr2R_11_19385001 chr2R_19385001 RAL-233 386 chr2R 19501482 19501520 chr2R 19501607 19501642 11 124 2.5 2.5 2.5 3.1 160 chr2R 19501482 intergenic CG16926 - chr2R 19501562 intergenic CG16926 - chr2R 19501642 intergenic CG16926 - chr2R_11_19500001 chr2R_19500001 RAL-233 387 chr2R 19582946 19582960 chr2R 19583228 19583251 5 289 1.5 2.0 1.8 1.8 305 chr2R 19582946 intron sm - chr2R 19583098 intron sm - chr2R 19583251 intron sm - chr2R_5_19580001 chr2R_19580001 RAL-233 388 chr2R 19776601 19776630 chr2R 19779923 19779953 jockey 6 3323 2.5 2.0 2.2 1.9 3352 chr2R 19776601 intergenic not near genes chr2R 19778277 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-233 389 chr2R 19897095 19897107 chr2R 19897181 19897183 4 81 4.0 7.0 5.5 0.6 88 chr2R 19897095 intergenic CR44572 - chr2R 19897139 intergenic CR44572 - chr2R 19897183 intergenic CR44572 - chr2R_4_19895001 chr2R_19895001 RAL-233 390 chr2R 19897110 19897120 chr2R 19897179 19897206 4 82 3.0 6.5 4.8 0.7 96 chr2R 19897110 intergenic CR44572 - chr2R 19897158 intergenic CR44572 - chr2R 19897206 intergenic CR44572 - chr2R_4_19895001 chr2R_19895001 RAL-233 391 chr2R 19957436 19957458 chr2R 19962630 19962660 copia 10 5198 1.0 2.0 1.5 4.0 5224 chr2R 19957436 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_10_19960001 chr2R_19960001 RAL-233 392 chr2R 20031914 20031939 chr2R 20032010 20032035 5 96 2.5 3.5 3.0 1.2 121 chr2R 20031914 intergenic not near genes chr2R 20031974 intergenic not near genes chr2R 20032035 intergenic not near genes chr2R_5_20030001 chr2R_20030001 RAL-233 393 chr2R 20449241 20449253 chr2R 20449316 20449329 8 76 5.0 2.5 3.8 1.7 88 chr2R 20449241 intron CG12484 + chr2R 20449285 intron CG12484 + chr2R 20449329 intron CG12484 + chr2R_8_20445001 chr2R_20445001 RAL-233 394 chr2R 20523053 20523069 chr2R 20523160 20523160 4 105 1.0 5.5 3.2 1.0 107 chr2R 20523053 intergenic not near genes chr2R 20523106 intergenic not near genes chr2R 20523160 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-233 395 chr2R 20739442 20739473 chr2R 20744210 20744240 F-element 5 4767 3.5 4.5 4.0 1.0 4798 chr2R 20739442 intron dpr + chr2R 20741841 intron dpr + chr2R 20744240 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-233 396 chr2R 20862336 20862345 chr2R 20862430 20862439 6 94 3.0 5.0 4.0 1.2 103 chr2R 20862336 intergenic not near genes chr2R 20862388 intergenic not near genes chr2R 20862439 intergenic not near genes chr2R_6_20860001 chr2R_20860001 RAL-233 397 chr2R 20962913 20962936 chr2R 20963011 20963033 6 98 0.5 2.0 1.2 2.7 120 chr2R 20962913 intergenic not near genes chr2R 20962973 intergenic not near genes chr2R 20963033 intergenic not near genes chr2R_6_20960001 chr2R_20960001 RAL-233 398 chr2R 21075681 21075708 chr2R 21075768 21075787 8 86 2.5 1.5 2.0 2.7 106 chr2R 21075681 intron Treh + chr2R 21075734 intron Treh + chr2R 21075787 intron Treh + chr2R_8_21075001 chr2R_21075001 RAL-233 399 chr2R 21136897 21136916 chr2R 21136981 21137000 6 84 1.0 1.5 1.2 2.7 103 chr2R 21136897 intron Magi - chr2R 21136948 intron Magi - chr2R 21137000 intron Magi - chr2R_6_21135001 chr2R_21135001 RAL-233 400 chr2R 21371467 21371485 chr2R 21371573 21371589 5 106 1.0 1.0 1.0 2.5 122 chr2R 21371467 intron cv-2 - chr2R 21371528 intron cv-2 - chr2R 21371589 intron cv-2 - chr2R_5_21370001 chr2R_21370001 RAL-233 401 chr2R 21402128 21402145 chr2R 21402264 21402281 6 136 3.5 2.0 2.8 1.6 153 chr2R 21402128 intron Sdc - chr2R 21402204 intron Sdc - chr2R 21402281 intron Sdc - chr2R_6_21400001 chr2R_21400001 RAL-233 402 chr2R 21505775 21505792 chr2R 21505856 21505873 4 81 0.5 3.0 1.8 1.4 98 chr2R 21505775 intron MESK2 + chr2R 21505824 intron MESK2 + chr2R 21505873 intron MESK2 + chr2R_4_21505001 chr2R_21505001 RAL-233 403 chr2R 21534109 21534137 chr2R 21534196 21534224 4 87 3.0 2.5 2.8 1.1 115 chr2R 21534109 intron Egfr + chr2R 21534166 intron Egfr + chr2R 21534224 intron Egfr + chr2R_4_21530001 chr2R_21530001 RAL-233 404 chr2R 21546785 21546821 chr2R 21546866 21546866 6 68 3.0 4.5 3.8 1.2 81 chr2R 21546785 intron Egfr + chr2R 21546826 intron Egfr + chr2R 21546866 intron Egfr + chr2R_6_21545001 chr2R_21545001 RAL-233 405 chr2R 21700155 21700171 chr2R 21700241 21700255 5 84 3.5 6.0 4.8 0.9 100 chr2R 21700155 intron HmgZ - chr2R 21700205 intron HmgZ - chr2R 21700255 intron HmgZ - chr2R_5_21700001 chr2R_21700001 RAL-233 406 chr2R 21738275 21738306 chr2R 21747435 21747466 roo 4 9158 1.5 2.0 1.8 1.4 9191 chr2R 21738275 intergenic not near genes chr2R 21742870 intergenic not near genes chr2R 21747466 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-233 407 chr2R 21769162 21769189 chr2R 21769377 21769400 4 214 0.0 1.5 0.8 2.2 238 chr2R 21769162 exon CG30395 + chr2R 21769281 intron CG30395 + chr2R 21769400 exon CG30395 + chr2R_4_21765001 chr2R_21765001 RAL-233 408 chr2R 21789602 21789630 chr2R 21789713 21789741 6 111 1.5 2.5 2.0 2.0 139 chr2R 21789602 intergenic lox2 - chr2R 21789672 3` UTR lox2 - chr2R 21789741 3` UTR lox2 - chr2R_6_21785001 chr2R_21785001 RAL-233 409 chr2R 21919880 21919904 chr2R 21919961 21919992 11 87 1.5 0.5 1.0 5.5 112 chr2R 21919880 intron Fili + chr2R 21919936 intron Fili + chr2R 21919992 intron Fili + chr2R_11_21915001 chr2R_21915001 RAL-233 410 chr2R 21932254 21932282 chr2R 21932332 21932360 9 76 2.0 3.0 2.5 2.6 106 chr2R 21932254 intron Fili + chr2R 21932307 intron Fili + chr2R 21932360 intron Fili + chr2R_9_21930001 chr2R_21930001 RAL-233 411 chr2R 22003087 22003108 chr2R 22003173 22003194 5 86 3.0 0.5 1.8 1.8 107 chr2R 22003087 intron CG34370 - chr2R 22003140 intron CG34370 - chr2R 22003194 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-233 412 chr2R 22014209 22014231 chr2R 22014275 22014307 6 73 4.5 3.5 4.0 1.2 98 chr2R 22014209 intron CG34370 - chr2R 22014258 intron CG34370 - chr2R 22014307 intron CG34370 - chr2R_6_22010001 chr2R_22010001 RAL-233 413 chr2R 22095966 22095993 chr2R 22096049 22096076 4 82 2.0 2.0 2.0 1.3 110 chr2R 22095966 intron CG11073 - chr2R 22096021 intron CG11073 - chr2R 22096076 intron CG11073 - chr2R_4_22095001 chr2R_22095001 RAL-233 414 chr2R 22102121 22102136 chr2R 22102209 22102220 6 87 3.5 1.0 2.2 1.9 99 chr2R 22102121 intergenic not near genes chr2R 22102170 intergenic not near genes chr2R 22102220 intergenic not near genes chr2R_6_22100001 chr2R_22100001 RAL-233 415 chr2R 22349690 22349722 chr2R 22351474 22351506 jockey 9 1783 2.5 1.5 2.0 3.0 1816 chr2R 22349690 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351506 intron Liprin-gamma - chr2R_9_22350001 chr2R_22350001 RAL-233 416 chr2R 22360383 22360393 chr2R 22360816 22360826 jockey 5 432 2.0 1.0 1.5 2.0 443 chr2R 22360383 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360826 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-233 417 chr2R 22476928 22476944 chr2R 22483083 22483104 12 6150 25.0 8.5 16.8 0.7 6176 chr2R 22476928 exon CG45063 - chr2R 22480016 exon CG4752 + chr2R 22483104 intergenic CG4752 +,CG4554 + chr2R_12_22480001 chr2R_22480001 RAL-233 418 chr2R 22505973 22505984 chr2R 22506071 22506082 5 98 3.5 0.0 1.8 1.8 109 chr2R 22505973 intron px - chr2R 22506028 intron px - chr2R 22506082 intron px - chr2R_5_22505001 chr2R_22505001 RAL-233 419 chr2R 22509501 22509510 chr2R 22509582 22509609 4 92 3.5 0.5 2.0 1.3 108 chr2R 22509501 intron px - chr2R 22509555 intron px - chr2R 22509609 intron px - chr2R_4_22505001 chr2R_22505001 RAL-233 420 chr2R 22517742 22517774 chr2R 22518092 22518125 11 350 5.0 3.5 4.2 2.1 383 chr2R 22517742 intron px - chr2R 22517934 intron px - chr2R 22518125 intron px - chr2R_11_22515001 chr2R_22515001 RAL-233 421 chr2R 22525756 22525782 chr2R 22529311 22529337 jockey 7 3555 2.0 0.5 1.2 3.2 3581 chr2R 22525756 intron px - chr2R 22527546 intron px - chr2R 22529337 intron px - chr2R_7_22525001 chr2R_22525001 RAL-233 422 chr2R 22577105 22577123 chr2R 22577171 22577204 4 76 1.5 0.5 1.0 2.0 99 chr2R 22577105 intron dnr1 - chr2R 22577154 intron dnr1 - chr2R 22577204 intron dnr1 - chr2R_4_22575001 chr2R_22575001 RAL-233 423 chr2R 22757220 22757245 chr2R 22757492 22757519 6 272 0.5 1.5 1.0 3.0 299 chr2R 22757220 intron,intron CG42260 -,CR30267 + chr2R 22757370 intron,intron CG42260 -,CR30267 + chr2R 22757519 intron,intron CG42260 -,CR30267 + chr2R_6_22755001 chr2R_22755001 RAL-233 424 chr2R 22774961 22774994 chr2R 22775380 22775413 jockey 9 419 2.5 2.0 2.2 2.8 452 chr2R 22774961 intron CG42260 - chr2R 22775187 intron CG42260 - chr2R 22775413 intron CG42260 - chr2R_9_22775001 chr2R_22775001 RAL-233 425 chr2R 22925347 22925373 chr2R 22925443 22925468 6 96 3.0 1.0 2.0 2.0 121 chr2R 22925347 5` UTR CG42678 + chr2R 22925408 5` UTR CG42678 + chr2R 22925468 5` UTR CG42678 + chr2R_6_22925001 chr2R_22925001 RAL-233 426 chr2R 23131352 23131365 chr2R 23131449 23131466 6 100 2.0 0.0 1.0 3.0 114 chr2R 23131352 intergenic not near genes chr2R 23131409 intergenic not near genes chr2R 23131466 intergenic not near genes chr2R_6_23130001 chr2R_23130001 RAL-233 427 chr2R 23236971 23236988 chr2R 23237062 23237080 4 92 0.0 1.0 0.5 2.7 109 chr2R 23236971 intergenic not near genes chr2R 23237026 intergenic not near genes chr2R 23237080 intergenic not near genes chr2R_4_23235001 chr2R_23235001 RAL-233 428 chr2R 23351923 23351946 chr2R 23352009 23352032 9 85 1.0 1.0 1.0 4.5 109 chr2R 23351923 exon CG34210 + chr2R 23351978 3` UTR CG34210 + chr2R 23352032 3` UTR CG34210 + chr2R_9_23350001 chr2R_23350001 RAL-233 429 chr2R 23529582 23529598 chr2R 23537158 23537167 412 4 7573 4.0 10.0 7.0 0.5 7585 chr2R 23529582 intron bw - chr2R 23533374 intron bw - chr2R 23537167 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-233 430 chr2R 23529600 23529607 chr2R 23537153 23537161 412 4 7559 3.0 7.5 5.2 0.6 7561 chr2R 23529600 exon bw - chr2R 23533380 intron bw - chr2R 23537161 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-233 431 chr2R 23607039 23607184 chr2R 23607120 23607277 8 85 2.5 0.5 1.5 3.2 238 chr2R 23607039 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607277 intron CG17664 - chr2R_8_23605001 chr2R_23605001 RAL-233 432 chr2R 23914314 23914329 chr2R 23921922 23921953 412 11 7615 3.5 5.0 4.2 2.1 7639 chr2R 23914314 exon kcc + chr2R 23918134 intron kcc + chr2R 23921953 intron kcc + chr2R_11_23915001 chr2R_23915001 RAL-233 433 chr2R 24031379 24031408 chr2R 24031463 24031492 11 83 0.5 1.0 0.8 6.1 113 chr2R 24031379 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031492 intergenic Chi -,CG30172 - chr2R_11_24030001 chr2R_24030001 RAL-233 434 chr2R 24147068 24147090 chr2R 24154646 24154668 412 4 7578 4.5 3.5 4.0 0.8 7600 chr2R 24147068 intron Dat + chr2R 24150868 intron Dat + chr2R 24154668 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-233 435 chr2R 24177234 24177257 chr2R 24184719 24184742 412 4 7485 2.0 0.5 1.2 1.8 7508 chr2R 24177234 3` UTR Nop60B + chr2R 24180988 intron Nop60B + chr2R 24184742 3` UTR Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-233 436 chr2R 24228395 24228425 chr2R 24228475 24228484 4 69 2.0 1.0 1.5 1.6 89 chr2R 24228395 intron CG30419 - chr2R 24228440 intron CG30419 - chr2R 24228484 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-233 437 chr2R 24320188 24320205 chr2R 24320265 24320281 6 76 1.0 5.0 3.0 1.5 93 chr2R 24320188 intergenic not near genes chr2R 24320234 intergenic not near genes chr2R 24320281 intergenic not near genes chr2R_6_24320001 chr2R_24320001 RAL-233 438 chr2R 24353438 24353461 chr2R 24361799 24361822 roo 6 8362 0.0 5.5 2.8 1.6 8384 chr2R 24353438 intron,intron bs +,CR44811 - chr2R 24357630 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-233 439 chr2R 24590110 24590146 chr2R 24590202 24590231 11 90 1.5 4.0 2.8 2.9 121 chr2R 24590110 intron pio + chr2R 24590170 intron pio + chr2R 24590231 intron pio + chr2R_11_24590001 chr2R_24590001 RAL-233 440 chr2R 24591523 24591545 chr2R 24591599 24591621 5 76 2.0 2.5 2.2 1.6 98 chr2R 24591523 intron pio + chr2R 24591572 intron pio + chr2R 24591621 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-233 441 chr2R 24647598 24647607 chr2R 24655155 24655164 412 5 7557 6.0 3.5 4.8 0.9 7566 chr2R 24647598 intergenic not near genes chr2R 24651381 intergenic not near genes chr2R 24655164 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-233 442 chr2R 24708685 24708721 chr2R 24708854 24708877 10 167 2.5 1.0 1.8 3.6 192 chr2R 24708685 intron Mid1 - chr2R 24708781 intron Mid1 - chr2R 24708877 intron Mid1 - chr2R_10_24705001 chr2R_24705001 RAL-233 443 chr2R 24727884 24727918 chr2R 24735392 24735426 mdg1 12 7507 2.5 5.0 3.8 2.5 7542 chr2R 24727884 intron Mid1 - chr2R 24731655 intron Mid1 - chr2R 24735426 intron Mid1 - chr2R_12_24730001 chr2R_24730001 RAL-233 444 chr2R 24763609 24763640 chr2R 24765584 24765614 G2 14 1971 8.5 5.5 7.0 1.8 2005 chr2R 24763609 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765614 exon CG3894 + chr2R_14_24760001 chr2R_24760001 RAL-233 445 chr2R 24859843 24859863 chr2R 24859928 24859949 5 84 3.5 2.0 2.8 1.3 106 chr2R 24859843 5` UTR CR44829 + chr2R 24859896 5` UTR CR44829 + chr2R 24859949 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-233 446 chr2R 24884059 24884077 chr2R 24884141 24884159 4 82 2.0 1.0 1.5 1.6 100 chr2R 24884059 intron NKAIN + chr2R 24884109 intron NKAIN + chr2R 24884159 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-233 447 chr2R 25014550 25014571 chr2R 25014626 25014646 10 74 1.5 1.0 1.2 4.5 96 chr2R 25014550 intron uzip + chr2R 25014598 intron uzip + chr2R 25014646 intron uzip + chr2R_10_25010001 chr2R_25010001 RAL-233 448 chr2R 25018351 25018375 chr2R 25018442 25018476 10 98 2.5 0.5 1.5 4.0 125 chr2R 25018351 intron uzip + chr2R 25018414 intron uzip + chr2R 25018476 intron uzip + chr2R_10_25015001 chr2R_25015001 RAL-233 449 chr2R 25022659 25022672 chr2R 25022743 25022756 4 84 0.0 1.5 0.8 2.2 97 chr2R 25022659 intron uzip + chr2R 25022708 intron uzip + chr2R 25022756 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-233 450 chr2R 25024044 25024060 chr2R 25024376 25024381 4 327 2.5 6.0 4.2 0.8 337 chr2R 25024044 intron uzip + chr2R 25024212 intron uzip + chr2R 25024381 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-233 451 chr2R 25081612 25081639 chr2R 25082704 25082734 5 1092 3.0 3.5 3.2 1.2 1122 chr2R 25081612 intron gol - chr2R 25082173 intron gol - chr2R 25082734 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-233 452 chr2R 25101274 25101307 chr2R 25101376 25101409 10 101 0.5 0.0 0.2 8.3 135 chr2R 25101274 intron lov - chr2R 25101342 intron lov - chr2R 25101409 intron lov - chr2R_10_25100001 chr2R_25100001 RAL-233 453 chr2R 25253459 25253478 chr2R 25253535 25253554 4 76 0.0 2.5 1.2 1.8 95 chr2R 25253459 intron,intron CG9380 -,CG30428 + chr2R 25253506 intron,intron CG9380 -,CG30428 + chr2R 25253554 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-233 454 chr3L 30861 30874 chr3L 30989 31003 4 128 2.0 2.0 2.0 1.3 142 chr3L 30861 intergenic not near genes chr3L 30932 intergenic not near genes chr3L 31003 intergenic not near genes chr3L_4_30001 chr3L_30001 RAL-233 455 chr3L 69007 69011 chr3L 69077 69098 4 83 1.0 2.0 1.5 1.6 91 chr3L 69007 intergenic Lsp1gamma +,CR44510 + chr3L 69052 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-233 456 chr3L 71935 71942 chr3L 72018 72024 4 83 3.0 2.0 2.5 1.1 89 chr3L 71935 intergenic CR43988 - chr3L 71980 intergenic CR43988 - chr3L 72024 intergenic CR43988 - chr3L_4_70001 chr3L_70001 RAL-233 457 chr3L 110217 110241 chr3L 119384 119408 roo 4 9167 0.0 2.0 1.0 2.0 9191 chr3L 110217 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119408 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-233 458 chr3L 365524 365541 chr3L 365610 365625 4 86 1.0 0.0 0.5 2.7 101 chr3L 365524 3` UTR CG1233 + chr3L 365574 3` UTR CG1233 + chr3L 365625 3` UTR CG1233 + chr3L_4_365001 chr3L_365001 RAL-233 459 chr3L 402690 402718 chr3L 409741 409771 297 9 7050 2.5 5.0 3.8 1.9 7081 chr3L 402690 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-233 460 chr3L 421048 421084 chr3L 421143 421180 8 95 1.5 2.5 2.0 2.7 132 chr3L 421048 intergenic not near genes chr3L 421114 intergenic not near genes chr3L 421180 intergenic not near genes chr3L_8_420001 chr3L_420001 RAL-233 461 chr3L 759834 759852 chr3L 760008 760030 5 177 2.5 3.0 2.8 1.3 196 chr3L 759834 intergenic not near genes chr3L 759932 intergenic not near genes chr3L 760030 intergenic not near genes chr3L_5_755001 chr3L_755001 RAL-233 462 chr3L 858014 858032 chr3L 866478 866506 Tirant 4 8469 4.0 4.0 4.0 0.8 8492 chr3L 858014 intergenic not near genes chr3L 862260 intergenic not near genes chr3L 866506 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-233 463 chr3L 875658 875691 chr3L 875745 875776 11 84 3.5 4.5 4.0 2.2 118 chr3L 875658 intron CG32479 + chr3L 875717 intron CG32479 + chr3L 875776 intron CG32479 + chr3L_11_875001 chr3L_875001 RAL-233 464 chr3L 925180 925202 chr3L 932606 932628 mdg1 6 7425 2.0 2.0 2.0 2.0 7448 chr3L 925180 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932628 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-233 465 chr3L 933911 933942 chr3L 934014 934044 7 103 1.5 2.0 1.8 2.5 133 chr3L 933911 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934044 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-233 466 chr3L 939777 939793 chr3L 940897 940914 jockey 7 1121 3.0 2.0 2.5 2.0 1137 chr3L 939777 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940914 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-233 467 chr3L 1031576 1031611 chr3L 1031652 1031656 8 70 2.5 5.0 3.8 1.7 80 chr3L 1031576 intron trio - chr3L 1031616 intron trio - chr3L 1031656 intron trio - chr3L_8_1030001 chr3L_1030001 RAL-233 468 chr3L 1047369 1047385 chr3L 1055166 1055166 412 4 7797 0.0 1.0 0.5 2.7 7797 chr3L 1047369 intron bab1 - chr3L 1051268 intron bab1 - chr3L 1055166 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-233 469 chr3L 1109645 1109663 chr3L 1109724 1109751 5 82 1.5 0.5 1.0 2.5 106 chr3L 1109645 intergenic not near genes chr3L 1109698 intergenic not near genes chr3L 1109751 intergenic not near genes chr3L_5_1105001 chr3L_1105001 RAL-233 470 chr3L 1219597 1219625 chr3L 1227328 1227357 412 12 7732 3.5 4.0 3.8 2.5 7760 chr3L 1219597 intron mwh + chr3L 1223477 intron mwh + chr3L 1227357 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-233 471 chr3L 1257632 1257651 chr3L 1257712 1257731 5 79 0.0 0.0 0.0 5.0 99 chr3L 1257632 intron CG9134 + chr3L 1257682 intron CG9134 + chr3L 1257731 intron CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-233 472 chr3L 1347157 1347193 chr3L 1347242 1347268 8 83 5.0 4.0 4.5 1.5 111 chr3L 1347157 intron Ptp61F - chr3L 1347212 intron Ptp61F - chr3L 1347268 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-233 473 chr3L 1415774 1415804 chr3L 1415855 1415886 8 81 2.0 3.5 2.8 2.1 112 chr3L 1415774 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415886 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-233 474 chr3L 1548099 1548119 chr3L 1548182 1548209 4 88 1.0 3.0 2.0 1.3 110 chr3L 1548099 intron Cct1 + chr3L 1548154 intron Cct1 + chr3L 1548209 intron Cct1 + chr3L_4_1545001 chr3L_1545001 RAL-233 475 chr3L 1688246 1688263 chr3L 1688375 1688386 4 128 1.0 0.5 0.8 2.2 140 chr3L 1688246 intron CG7991 + chr3L 1688316 intron CG7991 + chr3L 1688386 intron CG7991 + chr3L_4_1685001 chr3L_1685001 RAL-233 476 chr3L 1754693 1754717 chr3L 1754812 1754836 6 119 4.0 3.5 3.8 1.2 143 chr3L 1754693 intron Cht2 - chr3L 1754764 intron Cht2 - chr3L 1754836 intron Cht2 - chr3L_6_1750001 chr3L_1750001 RAL-233 477 chr3L 1882597 1882622 chr3L 1884179 1884203 8 1581 22.5 18.5 20.5 0.4 1606 chr3L 1882597 intron CG13937 - chr3L 1883400 intergenic CG13937 -,Aprt - chr3L 1884203 exon Aprt - chr3L_8_1880001 chr3L_1880001 RAL-233 478 chr3L 1978704 1978722 chr3L 1978926 1978945 5 222 16.5 25.0 20.8 0.2 241 chr3L 1978704 intergenic not near genes chr3L 1978824 intergenic not near genes chr3L 1978945 intergenic not near genes chr3L_5_1975001 chr3L_1975001 RAL-233 479 chr3L 2168775 2168799 chr3L 2168866 2168890 7 91 2.5 1.5 2.0 2.3 115 chr3L 2168775 exon CG15879 - chr3L 2168832 intron CG15879 - chr3L 2168890 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-233 480 chr3L 2282990 2283014 chr3L 2283066 2283090 5 75 2.0 0.5 1.2 2.3 100 chr3L 2282990 5` UTR MsR2 + chr3L 2283040 5` UTR MsR2 + chr3L 2283090 5` UTR MsR2 + chr3L_5_2280001 chr3L_2280001 RAL-233 481 chr3L 2308002 2308031 chr3L 2308108 2308137 7 106 1.5 0.0 0.8 3.9 135 chr3L 2308002 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308137 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-233 482 chr3L 2321163 2321182 chr3L 2321234 2321237 4 70 4.5 1.0 2.8 1.1 74 chr3L 2321163 intergenic not near genes chr3L 2321200 intergenic not near genes chr3L 2321237 intergenic not near genes chr3L_4_2320001 chr3L_2320001 RAL-233 483 chr3L 2447513 2447537 chr3L 2456662 2456693 roo 6 9153 1.0 1.5 1.2 2.7 9180 chr3L 2447513 intron CG45186 + chr3L 2452103 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-233 484 chr3L 2479014 2479033 chr3L 2479110 2479129 7 96 1.5 4.5 3.0 1.8 115 chr3L 2479014 intron CG45186 + chr3L 2479072 intron CG45186 + chr3L 2479129 intron CG45186 + chr3L_7_2475001 chr3L_2475001 RAL-233 485 chr3L 2533669 2533675 chr3L 2533736 2533741 5 72 3.0 6.0 4.5 0.9 72 chr3L 2533669 intron Spn - chr3L 2533705 intron Spn - chr3L 2533741 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-233 486 chr3L 2579830 2579854 chr3L 2580004 2580027 4 174 2.0 0.0 1.0 2.0 197 chr3L 2579830 intron msn - chr3L 2579928 intron msn - chr3L 2580027 intron msn - chr3L_4_2575001 chr3L_2575001 RAL-233 487 chr3L 2621833 2621865 chr3L 2626113 2626145 13 4283 26.0 20.0 23.0 0.5 4312 chr3L 2621833 intron Pxn - chr3L 2623989 intron Pxn - chr3L 2626145 intron Pxn - chr3L_13_2620001 chr3L_2620001 RAL-233 488 chr3L 2631058 2631090 chr3L 2631168 2631199 13 109 1.5 2.5 2.0 4.3 141 chr3L 2631058 intergenic CR45660 - chr3L 2631128 intergenic CR45660 - chr3L 2631199 intergenic not near genes chr3L_13_2630001 chr3L_2630001 RAL-233 489 chr3L 2719536 2719553 chr3L 2719638 2719655 4 102 1.0 2.0 1.5 1.6 119 chr3L 2719536 3` UTR Mrtf - chr3L 2719596 3` UTR Mrtf - chr3L 2719655 3` UTR Mrtf - chr3L_4_2715001 chr3L_2715001 RAL-233 490 chr3L 2812335 2812365 chr3L 2812417 2812447 7 81 3.5 0.0 1.8 2.5 112 chr3L 2812335 intron CG43444 - chr3L 2812391 intron CG43444 - chr3L 2812447 intron CG43444 - chr3L_7_2810001 chr3L_2810001 RAL-233 491 chr3L 2854482 2854502 chr3L 2854556 2854568 5 73 0.5 4.0 2.2 1.6 86 chr3L 2854482 intron CG43444 - chr3L 2854525 intron CG43444 - chr3L 2854568 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-233 492 chr3L 2927842 2927870 chr3L 2936118 2936147 Tirant 4 8276 1.0 0.0 0.5 2.7 8305 chr3L 2927842 intron Shab + chr3L 2931994 intron Shab + chr3L 2936147 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-233 493 chr3L 3281455 3281465 chr3L 3281934 3281961 Doc 11 493 2.5 2.5 2.5 3.1 506 chr3L 3281455 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281961 intron CG12017 + chr3L_11_3280001 chr3L_3280001 RAL-233 494 chr3L 3388603 3388617 chr3L 3388678 3388690 9 87 2.0 3.0 2.5 2.6 87 chr3L 3388603 intergenic not near genes chr3L 3388646 intergenic not near genes chr3L 3388690 intergenic not near genes chr3L_9_3385001 chr3L_3385001 RAL-233 495 chr3L 3475077 3475112 chr3L 3475521 3475556 jockey 12 443 1.5 1.5 1.5 4.8 479 chr3L 3475077 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_12_3475001 chr3L_3475001 RAL-233 496 chr3L 3502604 3502624 chr3L 3502691 3502710 4 87 1.0 2.0 1.5 1.6 106 chr3L 3502604 intron CG42324 + chr3L 3502657 intron CG42324 + chr3L 3502710 intron CG42324 + chr3L_4_3500001 chr3L_3500001 RAL-233 497 chr3L 3601299 3601330 chr3L 3606610 3606640 copia 8 5311 2.5 1.5 2.0 2.7 5341 chr3L 3601299 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-233 498 chr3L 3619397 3619433 chr3L 3619491 3619527 4 94 0.5 0.5 0.5 2.7 130 chr3L 3619397 intergenic not near genes chr3L 3619462 intergenic not near genes chr3L 3619527 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-233 499 chr3L 4195137 4195172 chr3L 4195241 4195273 6 101 6.0 3.0 4.5 1.1 136 chr3L 4195137 exon CG43367 + chr3L 4195205 intron CG43367 + chr3L 4195273 intron CG43367 + chr3L_6_4195001 chr3L_4195001 RAL-233 500 chr3L 4277741 4277751 chr3L 4277934 4277944 4 193 2.0 4.5 3.2 1.0 203 chr3L 4277741 3` UTR CG1273 + chr3L 4277842 intergenic CG1273 +,CG1311 + chr3L 4277944 intergenic CG1311 +,CG1273 + chr3L_4_4275001 chr3L_4275001 RAL-233 501 chr3L 4446212 4446243 chr3L 4446298 4446329 4 86 1.5 2.0 1.8 1.4 117 chr3L 4446212 3` UTR CR45739 - chr3L 4446270 3` UTR CR45739 - chr3L 4446329 3` UTR CR45739 - chr3L_4_4445001 chr3L_4445001 RAL-233 502 chr3L 4837888 4837925 chr3L 4837966 4838001 5 78 1.0 0.5 0.8 2.8 113 chr3L 4837888 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4838001 3` UTR CG13707 - chr3L_5_4835001 chr3L_4835001 RAL-233 503 chr3L 4840405 4840418 chr3L 4840513 4840517 4 106 1.0 2.0 1.5 1.6 112 chr3L 4840405 intergenic CG13707 - chr3L 4840461 intergenic CG13707 - chr3L 4840517 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-233 504 chr3L 4858315 4858337 chr3L 4858393 4858427 10 84 5.0 3.5 4.2 1.9 112 chr3L 4858315 intergenic not near genes chr3L 4858371 intergenic not near genes chr3L 4858427 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-233 505 chr3L 5104488 5104503 chr3L 5124622 5124637 4 20134 0.0 1.0 0.5 2.7 20149 chr3L 5104488 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124637 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-233 506 chr3L 5190185 5190210 chr3L 5190309 5190334 5 123 3.0 0.0 1.5 2.0 149 chr3L 5190185 intron shep - chr3L 5190260 intron shep - chr3L 5190334 intron shep - chr3L_5_5190001 chr3L_5190001 RAL-233 507 chr3L 5265226 5265254 chr3L 5265418 5265443 15 186 4.5 3.5 4.0 3.0 217 chr3L 5265226 intron shep - chr3L 5265334 intron shep - chr3L 5265443 intron shep - chr3L_15_5265001 chr3L_5265001 RAL-233 508 chr3L 5482942 5483086 chr3L 5483151 5483205 8 141 0.5 1.0 0.8 4.4 263 chr3L 5482942 exon CG4835 + chr3L 5483074 exon CG4835 + chr3L 5483205 exon CG4835 + chr3L_8_5480001 chr3L_5480001 RAL-233 509 chr3L 5498404 5498432 chr3L 5498481 5498509 5 75 2.0 2.5 2.2 1.6 105 chr3L 5498404 exon blanks - chr3L 5498456 exon blanks - chr3L 5498509 exon blanks - chr3L_5_5495001 chr3L_5495001 RAL-233 510 chr3L 5517343 5517372 chr3L 5517452 5517479 4 108 1.5 0.0 0.8 2.2 136 chr3L 5517343 intron Lkr - chr3L 5517411 intron Lkr - chr3L 5517479 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-233 511 chr3L 6001684 6001717 chr3L 6004384 6004417 jockey 5 2700 2.5 0.5 1.5 2.0 2733 chr3L 6001684 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-233 512 chr3L 6040373 6040390 chr3L 6042728 6042746 Doc 5 2356 1.0 1.5 1.2 2.3 2373 chr3L 6040373 intergenic Jon65Aiv + chr3L 6041560 intergenic not near genes chr3L 6042746 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-233 513 chr3L 6052533 6052668 chr3L 6052637 6052735 10 90 6.5 8.0 7.2 1.2 202 chr3L 6052533 exon Jon65Aii + chr3L 6052634 exon Jon65Aii + chr3L 6052735 exon Jon65Aii + chr3L_10_6050001 chr3L_6050001 RAL-233 514 chr3L 6159880 6159895 chr3L 6159970 6159985 4 90 0.5 1.5 1.0 2.0 105 chr3L 6159880 intergenic not near genes chr3L 6159932 intergenic not near genes chr3L 6159985 intergenic not near genes chr3L_4_6155001 chr3L_6155001 RAL-233 515 chr3L 6220914 6220948 chr3L 6230066 6230100 roo 5 9152 3.0 3.0 3.0 1.2 9186 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225507 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-233 516 chr3L 6284949 6284979 chr3L 6285043 6285073 5 94 0.5 1.0 0.8 2.8 124 chr3L 6284949 intergenic not near genes chr3L 6285011 intergenic not near genes chr3L 6285073 intergenic not near genes chr3L_5_6285001 chr3L_6285001 RAL-233 517 chr3L 6294820 6294833 chr3L 6295381 6295414 7 576 1.0 2.5 1.8 2.5 594 chr3L 6294820 intergenic not near genes chr3L 6295117 intergenic not near genes chr3L 6295414 intergenic not near genes chr3L_7_6295001 chr3L_6295001 RAL-233 518 chr3L 6399979 6399991 chr3L 6402531 6402543 5 2552 9.5 11.0 10.2 0.4 2564 chr3L 6399979 intergenic not near genes chr3L 6401261 intron CG42747 + chr3L 6402543 intron CG42747 + chr3L_5_6400001 chr3L_6400001 RAL-233 519 chr3L 6668965 6668992 chr3L 6669046 6669069 5 80 1.0 0.0 0.5 3.3 104 chr3L 6668965 intergenic not near genes chr3L 6669017 intergenic not near genes chr3L 6669069 intergenic not near genes chr3L_5_6665001 chr3L_6665001 RAL-233 520 chr3L 6798655 6798669 chr3L 6798929 6798943 4 274 4.0 2.0 3.0 1.0 288 chr3L 6798655 intergenic not near genes chr3L 6798799 intergenic not near genes chr3L 6798943 intergenic not near genes chr3L_4_6795001 chr3L_6795001 RAL-233 521 chr3L 6855932 6855955 chr3L 6860716 6860739 Doc 5 4783 2.5 4.0 3.2 1.2 4807 chr3L 6855932 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860739 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-233 522 chr3L 6934347 6934362 chr3L 6934458 6934473 5 111 0.5 1.5 1.0 2.5 126 chr3L 6934347 exon CG14820 + chr3L 6934410 intron CG14820 + chr3L 6934473 intron CG14820 + chr3L_5_6930001 chr3L_6930001 RAL-233 523 chr3L 7033176 7033199 chr3L 7033256 7033278 11 79 1.5 6.0 3.8 2.3 102 chr3L 7033176 intron Mp + chr3L 7033227 intron Mp + chr3L 7033278 intron Mp + chr3L_11_7030001 chr3L_7030001 RAL-233 524 chr3L 7079607 7079634 chr3L 7079681 7079711 4 75 2.5 0.0 1.2 1.8 104 chr3L 7079607 intergenic not near genes chr3L 7079659 intergenic not near genes chr3L 7079711 intergenic not near genes chr3L_4_7075001 chr3L_7075001 RAL-233 525 chr3L 7355677 7355679 chr3L 7362668 7362695 7 7002 32.5 26.0 29.2 0.2 7018 chr3L 7355677 exon CTCF - chr3L 7359186 exon pst - chr3L 7362695 exon Sec63 + chr3L_7_7355001 chr3L_7355001 RAL-233 526 chr3L 7460379 7460405 chr3L 7460463 7460489 4 84 0.0 2.5 1.2 1.8 110 chr3L 7460379 intergenic not near genes chr3L 7460434 intergenic not near genes chr3L 7460489 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-233 527 chr3L 7464866 7464890 chr3L 7464943 7464967 8 76 0.5 3.5 2.0 2.7 101 chr3L 7464866 intergenic not near genes chr3L 7464916 intergenic not near genes chr3L 7464967 intergenic not near genes chr3L_8_7460001 chr3L_7460001 RAL-233 528 chr3L 7572280 7572313 chr3L 7572367 7572400 12 87 2.0 1.5 1.8 4.3 120 chr3L 7572280 intergenic not near genes chr3L 7572340 intergenic not near genes chr3L 7572400 intergenic not near genes chr3L_12_7570001 chr3L_7570001 RAL-233 529 chr3L 7793716 7793745 chr3L 7800767 7800797 297 6 7051 1.0 1.0 1.0 3.0 7081 chr3L 7793716 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-233 530 chr3L 7835271 7835295 chr3L 7835357 7835358 5 81 2.5 5.5 4.0 1.0 87 chr3L 7835271 intron Pdp1 - chr3L 7835314 intron Pdp1 - chr3L 7835358 intron Pdp1 - chr3L_5_7835001 chr3L_7835001 RAL-233 531 chr3L 7835296 7835306 chr3L 7835352 7835378 7 73 1.5 4.0 2.8 1.8 82 chr3L 7835296 intron Pdp1 - chr3L 7835337 intron Pdp1 - chr3L 7835378 intron Pdp1 - chr3L_7_7835001 chr3L_7835001 RAL-233 532 chr3L 7886525 7886547 chr3L 7889043 7889065 Stalker4 7 2518 2.0 0.0 1.0 3.5 2540 chr3L 7886525 intron CG32365 + chr3L 7887795 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-233 533 chr3L 8057193 8057219 chr3L 8057280 8057288 5 84 1.5 1.5 1.5 2.0 95 chr3L 8057193 intron bip1 - chr3L 8057240 intron bip1 - chr3L 8057288 intron bip1 - chr3L_5_8055001 chr3L_8055001 RAL-233 534 chr3L 8060043 8060055 chr3L 8060136 8060148 5 95 2.5 0.5 1.5 2.0 105 chr3L 8060043 intergenic not near genes chr3L 8060096 intergenic not near genes chr3L 8060148 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-233 535 chr3L 8214735 8214753 chr3L 8214821 8214839 5 85 2.0 1.5 1.8 1.8 104 chr3L 8214735 intergenic not near genes chr3L 8214787 intergenic CG8012 + chr3L 8214839 intergenic CG8012 + chr3L_5_8210001 chr3L_8210001 RAL-233 536 chr3L 8243816 8243847 chr3L 8243899 8243930 9 81 0.5 1.0 0.8 5.0 114 chr3L 8243816 intron Dscam4 + chr3L 8243873 intron Dscam4 + chr3L 8243930 intron Dscam4 + chr3L_9_8240001 chr3L_8240001 RAL-233 537 chr3L 8498295 8498311 chr3L 8505762 8505778 blood 4 7467 1.0 1.5 1.2 1.8 7483 chr3L 8498295 intron CG43163 - chr3L 8502036 intron CG43163 - chr3L 8505778 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-233 538 chr3L 8540718 8540740 chr3L 8540795 8540817 6 77 0.0 2.5 1.2 2.7 99 chr3L 8540718 intergenic not near genes chr3L 8540768 intergenic not near genes chr3L 8540817 intergenic not near genes chr3L_6_8540001 chr3L_8540001 RAL-233 539 chr3L 8704103 8704124 chr3L 8704194 8704215 4 90 21.5 15.5 18.5 0.2 112 chr3L 8704103 intergenic not near genes chr3L 8704159 intergenic not near genes chr3L 8704215 intergenic not near genes chr3L_4_8700001 chr3L_8700001 RAL-233 540 chr3L 8743226 8743242 chr3L 8743311 8743314 4 80 6.5 4.0 5.2 0.6 88 chr3L 8743226 intron Prm - chr3L 8743270 intron Prm - chr3L 8743314 intron Prm - chr3L_4_8740001 chr3L_8740001 RAL-233 541 chr3L 8784276 8784293 chr3L 8784377 8784400 7 101 2.5 3.0 2.8 1.8 124 chr3L 8784276 intron Fhos + chr3L 8784338 intron Fhos + chr3L 8784400 intron Fhos + chr3L_7_8780001 chr3L_8780001 RAL-233 542 chr3L 8832400 8832428 chr3L 8832493 8832521 16 92 3.0 2.5 2.8 4.2 121 chr3L 8832400 intron dally + chr3L 8832460 intron dally + chr3L 8832521 intron dally + chr3L_16_8830001 chr3L_8830001 RAL-233 543 chr3L 9003947 9003977 chr3L 9004032 9004062 7 85 2.0 2.0 2.0 2.3 115 chr3L 9003947 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004062 intergenic not near genes chr3L_7_9000001 chr3L_9000001 RAL-233 544 chr3L 9008644 9008675 chr3L 9008727 9008757 11 82 0.5 4.0 2.2 3.4 113 chr3L 9008644 3` UTR CG5194 - chr3L 9008700 3` UTR CG5194 - chr3L 9008757 exon CG5194 - chr3L_11_9005001 chr3L_9005001 RAL-233 545 chr3L 9010657 9010684 chr3L 9010731 9010760 8 75 4.0 4.5 4.2 1.5 103 chr3L 9010657 intergenic not near genes chr3L 9010708 intergenic not near genes chr3L 9010760 intergenic not near genes chr3L_8_9010001 chr3L_9010001 RAL-233 546 chr3L 9013691 9013692 chr3L 18417066 18417066 4 9403374 8.5 14.5 11.5 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-233 547 chr3L 9076933 9076949 chr3L 9084493 9084509 412 5 7560 2.5 4.0 3.2 1.2 7576 chr3L 9076933 exon Tequila + chr3L 9080721 intron Tequila + chr3L 9084509 exon Tequila + chr3L_5_9080001 chr3L_9080001 RAL-233 548 chr3L 9256650 9256663 chr3L 9256739 9256752 4 89 3.5 2.0 2.8 1.1 102 chr3L 9256650 intron GluRIB + chr3L 9256701 intron GluRIB + chr3L 9256752 intron GluRIB + chr3L_4_9255001 chr3L_9255001 RAL-233 549 chr3L 9348468 9348484 chr3L 9348970 9348986 4 502 2.0 0.0 1.0 2.0 518 chr3L 9348468 intergenic PGRP-LC + chr3L 9348727 intergenic PGRP-LC + chr3L 9348986 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-233 550 chr3L 9516576 9516594 chr3L 9516656 9516675 5 80 2.5 3.5 3.0 1.2 99 chr3L 9516576 intron CG33700 - chr3L 9516626 intron CG33700 - chr3L 9516675 intron CG33700 - chr3L_5_9515001 chr3L_9515001 RAL-233 551 chr3L 9689515 9689528 chr3L 9689592 9689605 8 79 3.5 2.0 2.8 2.1 90 chr3L 9689515 intron CG6767 - chr3L 9689560 intron CG6767 - chr3L 9689605 intron CG6767 - chr3L_8_9685001 chr3L_9685001 RAL-233 552 chr3L 9809728 9809744 chr3L 9809804 9809821 6 77 5.5 3.0 4.2 1.2 93 chr3L 9809728 intergenic not near genes chr3L 9809774 intergenic not near genes chr3L 9809821 intergenic not near genes chr3L_6_9805001 chr3L_9805001 RAL-233 553 chr3L 9918793 9918819 chr3L 9919005 9919029 4 211 2.0 2.0 2.0 1.3 236 chr3L 9918793 intron CG34356 + chr3L 9918911 intron CG34356 + chr3L 9919029 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-233 554 chr3L 10052899 10052923 chr3L 10052999 10053026 5 102 4.0 4.5 4.2 1.0 127 chr3L 10052899 intron dpr6 + chr3L 10052962 intron dpr6 + chr3L 10053026 intron dpr6 + chr3L_5_10050001 chr3L_10050001 RAL-233 555 chr3L 10175869 10175897 chr3L 10176096 10176124 8 225 1.0 2.0 1.5 3.2 255 chr3L 10175869 intron dpr10 - chr3L 10175996 intron dpr10 - chr3L 10176124 intron dpr10 - chr3L_8_10175001 chr3L_10175001 RAL-233 556 chr3L 10219240 10219248 chr3L 10219337 10219345 5 97 3.0 1.0 2.0 1.7 105 chr3L 10219240 exon CG32055 - chr3L 10219292 exon CG32055 - chr3L 10219345 exon CG32055 - chr3L_5_10215001 chr3L_10215001 RAL-233 557 chr3L 10308764 10308774 chr3L 10308841 10308843 4 75 1.5 3.0 2.2 1.2 79 chr3L 10308764 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308843 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-233 558 chr3L 10417569 10417605 chr3L 10417646 10417682 13 75 4.5 5.0 4.8 2.2 113 chr3L 10417569 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417682 intergenic not near genes chr3L_13_10415001 chr3L_10415001 RAL-233 559 chr3L 10469934 10469965 chr3L 10470010 10470041 5 76 0.5 2.5 1.5 2.0 107 chr3L 10469934 intergenic not near genes chr3L 10469988 intergenic not near genes chr3L 10470041 intergenic not near genes chr3L_5_10465001 chr3L_10465001 RAL-233 560 chr3L 10602650 10602678 chr3L 10602735 10602762 4 85 2.5 2.5 2.5 1.1 112 chr3L 10602650 intergenic not near genes chr3L 10602706 intergenic not near genes chr3L 10602762 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-233 561 chr3L 10762838 10762845 chr3L 10762917 10762922 4 80 5.5 3.5 4.5 0.7 84 chr3L 10762838 intergenic not near genes chr3L 10762880 intergenic not near genes chr3L 10762922 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-233 562 chr3L 10762850 10762858 chr3L 10762913 10762936 4 77 3.0 3.5 3.2 1.0 86 chr3L 10762850 intergenic not near genes chr3L 10762893 intergenic not near genes chr3L 10762936 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-233 563 chr3L 11087058 11087086 chr3L 11088846 11088874 S-element 8 1788 2.0 1.5 1.8 2.9 1816 chr3L 11087058 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-233 564 chr3L 11105306 11105327 chr3L 11107017 11107031 X-element 5 1710 1.5 4.5 3.0 1.2 1725 chr3L 11105306 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107031 exon CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-233 565 chr3L 11245088 11245104 chr3L 11245180 11245196 5 92 3.5 2.0 2.8 1.3 108 chr3L 11245088 intergenic not near genes chr3L 11245142 intergenic not near genes chr3L 11245196 intergenic not near genes chr3L_5_11245001 chr3L_11245001 RAL-233 566 chr3L 11474626 11474658 chr3L 11474715 11474747 5 88 1.0 0.0 0.5 3.3 121 chr3L 11474626 intergenic Vha16-2 + chr3L 11474686 intergenic Vha16-2 + chr3L 11474747 intergenic Vha16-2 + chr3L_5_11470001 chr3L_11470001 RAL-233 567 chr3L 11678098 11678113 chr3L 11678185 11678200 4 87 0.0 0.0 0.0 4.0 102 chr3L 11678098 intron CG32085 - chr3L 11678149 intron CG32085 - chr3L 11678200 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-233 568 chr3L 11744018 11744041 chr3L 11744123 11744149 6 107 3.0 0.0 1.5 2.4 131 chr3L 11744018 exon CG6024 - chr3L 11744084 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-233 569 chr3L 11868161 11868198 chr3L 11868236 11868274 11 75 3.5 0.0 1.8 3.9 113 chr3L 11868161 intron CG44837 - chr3L 11868218 intron CG44837 - chr3L 11868274 intron CG44837 - chr3L_11_11865001 chr3L_11865001 RAL-233 570 chr3L 11984568 11984593 chr3L 11984659 11984674 8 85 2.5 0.0 1.2 3.6 106 chr3L 11984568 intergenic CG6938 + chr3L 11984621 intergenic CG6938 + chr3L 11984674 intergenic CG6938 + chr3L_8_11980001 chr3L_11980001 RAL-233 571 chr3L 12046080 12046100 chr3L 12046158 12046173 7 77 3.0 0.5 1.8 2.5 93 chr3L 12046080 intron rols - chr3L 12046126 intron rols - chr3L 12046173 intron rols - chr3L_7_12045001 chr3L_12045001 RAL-233 572 chr3L 12304092 12304115 chr3L 12304168 12304191 7 75 3.5 4.5 4.0 1.4 99 chr3L 12304092 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304191 intergenic not near genes chr3L_7_12300001 chr3L_12300001 RAL-233 573 chr3L 12341480 12341514 chr3L 12341667 12341702 9 187 1.5 2.0 1.8 3.2 222 chr3L 12341480 intron CrzR - chr3L 12341591 intron CrzR - chr3L 12341702 intron CrzR - chr3L_9_12340001 chr3L_12340001 RAL-233 574 chr3L 12369538 12369555 chr3L 12369628 12369645 6 90 0.5 1.0 0.8 3.3 107 chr3L 12369538 intron Ncc69 - chr3L 12369592 intron Ncc69 - chr3L 12369645 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-233 575 chr3L 12802001 12802013 chr3L 12802059 12802086 4 68 1.0 2.0 1.5 1.6 85 chr3L 12802001 intron Atg1 - chr3L 12802044 intron Atg1 - chr3L 12802086 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-233 576 chr3L 12815054 12815083 chr3L 12815173 12815202 4 119 2.0 0.0 1.0 2.0 148 chr3L 12815054 intron CG42588 + chr3L 12815128 intron CG42588 + chr3L 12815202 intron CG42588 + chr3L_4_12815001 chr3L_12815001 RAL-233 577 chr3L 12874926 12874939 chr3L 12877218 12877231 jockey 5 2292 2.0 0.0 1.0 2.5 2305 chr3L 12874926 intergenic not near genes chr3L 12876078 intergenic not near genes chr3L 12877231 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-233 578 chr3L 12894806 12894818 chr3L 12894884 12894896 4 76 5.5 5.5 5.5 0.6 90 chr3L 12894806 intergenic CG14118 + chr3L 12894851 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-233 579 chr3L 12919278 12919296 chr3L 12924762 12924764 Rt1c 4 5480 2.0 0.0 1.0 2.0 5486 chr3L 12919278 intergenic not near genes chr3L 12922021 intergenic not near genes chr3L 12924764 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-233 580 chr3L 12929731 12929742 chr3L 12930046 12930058 5 316 0.0 2.0 1.0 2.5 327 chr3L 12929731 intergenic not near genes chr3L 12929894 intergenic not near genes chr3L 12930058 intergenic not near genes chr3L_5_12925001 chr3L_12925001 RAL-233 581 chr3L 12957797 12957817 chr3L 12962279 12962299 copia 4 4482 0.5 5.0 2.8 1.1 4502 chr3L 12957797 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-233 582 chr3L 12967146 12967163 chr3L 12967230 12967246 4 84 2.0 3.0 2.5 1.1 100 chr3L 12967146 exon Or69a - chr3L 12967196 exon Or69a - chr3L 12967246 exon Or69a - chr3L_4_12965001 chr3L_12965001 RAL-233 583 chr3L 12980520 12980553 chr3L 12980608 12980640 8 85 1.5 0.0 0.8 4.4 120 chr3L 12980520 intergenic not near genes chr3L 12980580 intergenic not near genes chr3L 12980640 intergenic not near genes chr3L_8_12980001 chr3L_12980001 RAL-233 584 chr3L 13001635 13001657 chr3L 13003638 13003657 6 2002 12.5 20.0 16.2 0.3 2022 chr3L 13001635 intergenic not near genes chr3L 13002646 intergenic not near genes chr3L 13003657 intergenic not near genes chr3L_6_13000001 chr3L_13000001 RAL-233 585 chr3L 13007695 13007727 chr3L 13007773 13007806 7 76 0.5 2.0 1.2 3.2 111 chr3L 13007695 exon CG11263 + chr3L 13007750 3` UTR CG11263 + chr3L 13007806 3` UTR CG11263 + chr3L_7_13005001 chr3L_13005001 RAL-233 586 chr3L 13280295 13280324 chr3L 13280399 13280428 4 104 2.0 0.5 1.2 1.8 133 chr3L 13280295 intergenic not near genes chr3L 13280362 intergenic not near genes chr3L 13280428 intergenic not near genes chr3L_4_13280001 chr3L_13280001 RAL-233 587 chr3L 13338300 13338307 chr3L 13338434 13338441 4 134 3.5 2.5 3.0 1.0 141 chr3L 13338300 intergenic not near genes chr3L 13338370 intergenic not near genes chr3L 13338441 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-233 588 chr3L 13386349 13386382 chr3L 13386447 13386463 10 92 1.5 1.5 1.5 4.0 114 chr3L 13386349 3` UTR CG10171 - chr3L 13386406 3` UTR CG10171 - chr3L 13386463 3` UTR CG10171 - chr3L_10_13385001 chr3L_13385001 RAL-233 589 chr3L 13457919 13457941 chr3L 13458240 13458262 5 321 1.5 1.5 1.5 2.0 343 chr3L 13457919 intron CG10738 + chr3L 13458090 intron CG10738 + chr3L 13458262 intron CG10738 + chr3L_5_13455001 chr3L_13455001 RAL-233 590 chr3L 13525157 13525186 chr3L 13532952 13532982 roo 8 7795 3.0 3.0 3.0 2.0 7825 chr3L 13525157 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532982 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-233 591 chr3L 13651534 13651545 chr3L 13652001 13652020 7 468 9.0 4.5 6.8 0.9 486 chr3L 13651534 intron bru-3 - chr3L 13651777 intron bru-3 - chr3L 13652020 intron bru-3 - chr3L_7_13650001 chr3L_13650001 RAL-233 592 chr3L 14245565 14245578 chr3L 14245659 14245672 1360 4 91 4.5 1.0 2.8 1.1 107 chr3L 14245565 3` UTR CR44561 - chr3L 14245618 3` UTR CR44561 - chr3L 14245672 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-233 593 chr3L 14295999 14296014 chr3L 14296468 14296499 roo 6 482 2.5 2.5 2.5 1.7 500 chr3L 14295999 intron fz + chr3L 14296249 intron fz + chr3L 14296499 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-233 594 chr3L 14312027 14312036 chr3L 14316841 14316849 X-element 4 4814 5.5 3.0 4.2 0.8 4822 chr3L 14312027 exon fz + chr3L 14314438 intron fz + chr3L 14316849 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-233 595 chr3L 14483982 14483991 chr3L 14484056 14484076 6 79 5.5 3.0 4.2 1.2 94 chr3L 14483982 intron bbg - chr3L 14484029 intron bbg - chr3L 14484076 intron bbg - chr3L_6_14480001 chr3L_14480001 RAL-233 596 chr3L 14584159 14584164 chr3L 14584246 14584248 4 86 1.5 1.0 1.2 1.8 89 chr3L 14584159 intron HGTX - chr3L 14584204 intron HGTX - chr3L 14584248 intron HGTX - chr3L_4_14580001 chr3L_14580001 RAL-233 597 chr3L 14596538 14596561 chr3L 14596615 14596638 4 77 2.0 1.5 1.8 1.4 100 chr3L 14596538 intron HGTX - chr3L 14596588 intron HGTX - chr3L 14596638 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-233 598 chr3L 14721182 14721204 chr3L 14723025 14723047 Rt1c 4 1841 2.5 3.5 3.0 1.0 1865 chr3L 14721182 intron ome + chr3L 14722114 intron ome + chr3L 14723047 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-233 599 chr3L 15641783 15641808 chr3L 15641868 15641892 4 84 0.0 0.0 0.0 4.0 109 chr3L 15641783 intron comm3 - chr3L 15641838 intron comm3 - chr3L 15641892 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-233 600 chr3L 15655037 15655054 chr3L 15655108 15655131 4 76 5.5 3.5 4.5 0.7 94 chr3L 15655037 exon Eig71Ee - chr3L 15655084 exon Eig71Ee - chr3L 15655131 exon Eig71Ee - chr3L_4_15655001 chr3L_15655001 RAL-233 601 chr3L 15679171 15679203 chr3L 15679503 15679535 4 331 2.5 0.0 1.2 1.8 364 chr3L 15679171 intergenic not near genes chr3L 15679353 intergenic CG7304 + chr3L 15679535 intergenic CG7304 + chr3L_4_15675001 chr3L_15675001 RAL-233 602 chr3L 15738302 15738330 chr3L 15738405 15738433 5 102 0.5 1.0 0.8 2.8 131 chr3L 15738302 intergenic not near genes chr3L 15738368 intergenic not near genes chr3L 15738433 intergenic not near genes chr3L_5_15735001 chr3L_15735001 RAL-233 603 chr3L 15756878 15756910 chr3L 15756961 15756976 6 79 3.5 0.5 2.0 2.0 98 chr3L 15756878 intergenic not near genes chr3L 15756927 intergenic not near genes chr3L 15756976 intergenic not near genes chr3L_6_15755001 chr3L_15755001 RAL-233 604 chr3L 15784570 15784584 chr3L 15784667 15784681 4 97 1.0 0.5 0.8 2.2 111 chr3L 15784570 intergenic not near genes chr3L 15784626 intergenic not near genes chr3L 15784681 intergenic not near genes chr3L_4_15780001 chr3L_15780001 RAL-233 605 chr3L 15883190 15883207 chr3L 15883483 15883484 4 289 1.5 1.5 1.5 1.6 294 chr3L 15883190 intron pHCl - chr3L 15883337 intron pHCl - chr3L 15883484 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-233 606 chr3L 15920771 15920801 chr3L 15920868 15920898 8 96 1.0 1.0 1.0 4.0 127 chr3L 15920771 intron sff - chr3L 15920834 intron sff - chr3L 15920898 intron sff - chr3L_8_15920001 chr3L_15920001 RAL-233 607 chr3L 15948743 15948755 chr3L 15948826 15948838 4 82 5.0 1.0 3.0 1.0 95 chr3L 15948743 intron Pka-C3 - chr3L 15948790 intron Pka-C3 - chr3L 15948838 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-233 608 chr3L 16037394 16037417 chr3L 16037471 16037494 6 77 0.0 1.0 0.5 4.0 100 chr3L 16037394 intergenic CG5895 + chr3L 16037444 intergenic CG5895 + chr3L 16037494 intergenic CG5895 + chr3L_6_16035001 chr3L_16035001 RAL-233 609 chr3L 16162601 16162618 chr3L 16162680 16162702 4 83 1.0 0.0 0.5 2.7 101 chr3L 16162601 intron CG5151 - chr3L 16162652 intron CG5151 - chr3L 16162702 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-233 610 chr3L 16162793 16162814 chr3L 16163099 16163119 4 306 0.5 1.5 1.0 2.0 326 chr3L 16162793 intron CG5151 - chr3L 16162956 intron CG5151 - chr3L 16163119 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-233 611 chr3L 16325574 16325601 chr3L 16325666 16325682 18 89 4.5 6.0 5.2 2.9 108 chr3L 16325574 exon CG13040 - chr3L 16325628 exon CG13040 - chr3L 16325682 exon CG13040 - chr3L_18_16325001 chr3L_16325001 RAL-233 612 chr3L 16360888 16360916 chr3L 16360966 16360994 12 76 1.5 2.0 1.8 4.3 106 chr3L 16360888 intron CG45057 - chr3L 16360941 intron CG45057 - chr3L 16360994 intron CG45057 - chr3L_12_16360001 chr3L_16360001 RAL-233 613 chr3L 16493994 16494009 chr3L 16494511 16494520 jockey 6 516 4.5 2.0 3.2 1.4 526 chr3L 16493994 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494257 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494520 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_6_16490001 chr3L_16490001 RAL-233 614 chr3L 16651008 16651032 chr3L 16651084 16651110 8 76 0.5 4.5 2.5 2.3 102 chr3L 16651008 intron Baldspot - chr3L 16651059 intron Baldspot - chr3L 16651110 intron Baldspot - chr3L_8_16650001 chr3L_16650001 RAL-233 615 chr3L 16700011 16700038 chr3L 16700106 16700122 8 90 3.0 1.5 2.2 2.5 111 chr3L 16700011 intron,intron Lasp -,CG43954 - chr3L 16700066 intron,intron Lasp -,CG43954 - chr3L 16700122 intron,intron Lasp -,CG43954 - chr3L_8_16700001 chr3L_16700001 RAL-233 616 chr3L 16760863 16760880 chr3L 16761000 16761018 7 136 0.0 1.5 0.8 3.9 155 chr3L 16760863 intergenic not near genes chr3L 16760940 intergenic not near genes chr3L 16761018 intergenic not near genes chr3L_7_16760001 chr3L_16760001 RAL-233 617 chr3L 16817874 16817896 chr3L 16818014 16818018 8 137 4.5 1.5 3.0 2.0 144 chr3L 16817874 intron,intron nudC +,CG13024 - chr3L 16817946 intron,intron nudC +,CG13024 - chr3L 16818018 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-233 618 chr3L 16945747 16945760 chr3L 16954882 16954913 roo 9 9146 6.0 4.5 5.2 1.5 9166 chr3L 16945747 exon Obp73a + chr3L 16950330 intergenic not near genes chr3L 16954913 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-233 619 chr3L 17120656 17120682 chr3L 17120730 17120758 4 75 1.0 0.5 0.8 2.2 102 chr3L 17120656 intron Rbp6 - chr3L 17120707 intron Rbp6 - chr3L 17120758 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-233 620 chr3L 17178306 17178333 chr3L 17178430 17178452 6 123 0.5 1.0 0.8 3.3 146 chr3L 17178306 intron Rbp6 - chr3L 17178379 intron Rbp6 - chr3L 17178452 intron Rbp6 - chr3L_6_17175001 chr3L_17175001 RAL-233 621 chr3L 17191183 17191195 chr3L 17191359 17191383 4 186 3.5 1.5 2.5 1.1 200 chr3L 17191183 intron Rbp6 - chr3L 17191283 intron Rbp6 - chr3L 17191383 intron Rbp6 - chr3L_4_17190001 chr3L_17190001 RAL-233 622 chr3L 17309071 17309106 chr3L 17309154 17309166 8 77 5.5 2.5 4.0 1.6 95 chr3L 17309071 intergenic not near genes chr3L 17309118 intergenic not near genes chr3L 17309166 intergenic not near genes chr3L_8_17305001 chr3L_17305001 RAL-233 623 chr3L 17636107 17636132 chr3L 17636255 17636280 9 147 1.0 2.5 1.8 3.2 173 chr3L 17636107 intron CG7497 + chr3L 17636194 intron CG7497 + chr3L 17636280 intron CG7497 + chr3L_9_17635001 chr3L_17635001 RAL-233 624 chr3L 17769079 17769107 chr3L 17769195 17769222 4 116 5.5 2.0 3.8 0.8 143 chr3L 17769079 intergenic not near genes chr3L 17769150 intergenic not near genes chr3L 17769222 intergenic not near genes chr3L_4_17765001 chr3L_17765001 RAL-233 625 chr3L 17978330 17978354 chr3L 17978417 17978441 8 86 1.5 2.0 1.8 2.9 111 chr3L 17978330 intron Eip75B - chr3L 17978386 intron Eip75B - chr3L 17978441 intron Eip75B - chr3L_8_17975001 chr3L_17975001 RAL-233 626 chr3L 18092782 18092804 chr3L 18092897 18092919 5 115 0.5 0.0 0.2 4.2 137 chr3L 18092782 intron CG13698 - chr3L 18092850 intron CG13698 - chr3L 18092919 intron CG13698 - chr3L_5_18090001 chr3L_18090001 RAL-233 627 chr3L 18106266 18106285 chr3L 18106384 18106404 4 118 0.0 0.0 0.0 4.0 138 chr3L 18106266 intergenic CG13698 -,mRpS26 + chr3L 18106335 intergenic CG13698 -,mRpS26 + chr3L 18106404 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-233 628 chr3L 18248955 18248987 chr3L 18249053 18249085 4 98 0.5 3.0 1.8 1.4 130 chr3L 18248955 intergenic not near genes chr3L 18249020 intergenic not near genes chr3L 18249085 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-233 629 chr3L 18306892 18306918 chr3L 18306969 18306995 6 77 1.5 3.5 2.5 1.7 103 chr3L 18306892 intergenic not near genes chr3L 18306944 intergenic not near genes chr3L 18306995 intergenic not near genes chr3L_6_18305001 chr3L_18305001 RAL-233 630 chr3L 18337184 18337197 chr3L 18337259 18337279 4 80 2.0 3.0 2.5 1.1 95 chr3L 18337184 intergenic not near genes chr3L 18337232 intergenic not near genes chr3L 18337279 intergenic not near genes chr3L_4_18335001 chr3L_18335001 RAL-233 631 chr3L 9013689 9013693 chr3L 18417066 18417070 11 9403375 8.5 14.5 11.5 0.9 9403381 chr3L 9013689 intron Doc2 - chr3L 13715380 intron bru-3 - chr3L 18417070 intergenic not near genes chr3L_11_13715001 chr3L_13715001 RAL-233 632 chr3L 18649649 18649659 chr3L 18650010 18650022 4 362 0.5 0.5 0.5 2.7 373 chr3L 18649649 intron MYPT-75D + chr3L 18649836 intron MYPT-75D + chr3L 18650022 intron MYPT-75D + chr3L_4_18645001 chr3L_18645001 RAL-233 633 chr3L 18679670 18679703 chr3L 18679776 18679809 6 102 2.0 0.0 1.0 3.0 139 chr3L 18679670 intergenic not near genes chr3L 18679740 intergenic not near genes chr3L 18679809 intergenic not near genes chr3L_6_18675001 chr3L_18675001 RAL-233 634 chr3L 18941177 18941189 chr3L 18941288 18941299 4 111 3.0 2.0 2.5 1.1 122 chr3L 18941177 intron CG32204 - chr3L 18941238 intron CG32204 - chr3L 18941299 intron CG32204 - chr3L_4_18940001 chr3L_18940001 RAL-233 635 chr3L 19008858 19008871 chr3L 19009184 19009209 jockey 5 335 0.0 4.0 2.0 1.7 351 chr3L 19008858 intron nkd - chr3L 19009034 intron nkd - chr3L 19009209 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-233 636 chr3L 19082035 19082070 chr3L 19082137 19082172 8 100 1.0 1.5 1.2 3.6 137 chr3L 19082035 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082172 intron Mkp3 - chr3L_8_19080001 chr3L_19080001 RAL-233 637 chr3L 19117053 19117076 chr3L 19124488 19124523 mdg1 12 7445 3.0 2.5 2.8 3.2 7470 chr3L 19117053 intron CG14082 - chr3L 19120788 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_12_19120001 chr3L_19120001 RAL-233 638 chr3L 19138561 19138583 chr3L 19138640 19138645 7 76 2.0 5.5 3.8 1.5 84 chr3L 19138561 intron CG14082 - chr3L 19138603 intron CG14082 - chr3L 19138645 intron CG14082 - chr3L_7_19135001 chr3L_19135001 RAL-233 639 chr3L 19182390 19182420 chr3L 19182466 19182500 4 80 0.0 0.5 0.2 3.3 110 chr3L 19182390 intron fz2 - chr3L 19182445 intron fz2 - chr3L 19182500 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-233 640 chr3L 19202472 19202490 chr3L 19202790 19202794 5 313 1.5 3.0 2.2 1.6 322 chr3L 19202472 intron fz2 - chr3L 19202633 intron fz2 - chr3L 19202794 intron fz2 - chr3L_5_19200001 chr3L_19200001 RAL-233 641 chr3L 19269827 19269848 chr3L 19270024 19270040 6 198 3.5 1.0 2.2 1.9 213 chr3L 19269827 intron,exon CG14085 +,CG14088 - chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270040 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-233 642 chr3L 19295812 19295830 chr3L 19295938 19295956 6 126 1.0 0.0 0.5 4.0 144 chr3L 19295812 intron fal + chr3L 19295884 intron fal + chr3L 19295956 intron fal + chr3L_6_19295001 chr3L_19295001 RAL-233 643 chr3L 19458281 19458317 chr3L 19458389 19458425 6 106 0.0 3.0 1.5 2.4 144 chr3L 19458281 intergenic not near genes chr3L 19458353 intergenic not near genes chr3L 19458425 intergenic not near genes chr3L_6_19455001 chr3L_19455001 RAL-233 644 chr3L 19582154 19582187 chr3L 19582406 19582428 14 252 1.5 2.5 2.0 4.7 274 chr3L 19582154 intron Shal - chr3L 19582291 intron Shal - chr3L 19582428 intron Shal - chr3L_14_19580001 chr3L_19580001 RAL-233 645 chr3L 19699782 19699801 chr3L 19699859 19699878 4 77 0.5 1.0 0.8 2.2 96 chr3L 19699782 intergenic not near genes chr3L 19699830 intergenic not near genes chr3L 19699878 intergenic not near genes chr3L_4_19695001 chr3L_19695001 RAL-233 646 chr3L 19846613 19846631 chr3L 19846704 19846729 5 97 1.0 1.0 1.0 2.5 116 chr3L 19846613 intron Papss + chr3L 19846671 intron Papss + chr3L 19846729 intron Papss + chr3L_5_19845001 chr3L_19845001 RAL-233 647 chr3L 19960846 19960864 chr3L 19961511 19961529 7 665 0.0 2.5 1.2 3.2 683 chr3L 19960846 intron Ac76E + chr3L 19961188 intron Ac76E + chr3L 19961529 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-233 648 chr3L 20073889 20073919 chr3L 20073974 20074003 6 85 1.0 2.5 1.8 2.1 114 chr3L 20073889 intron sNPF-R - chr3L 20073946 intron sNPF-R - chr3L 20074003 intron sNPF-R - chr3L_6_20070001 chr3L_20070001 RAL-233 649 chr3L 20143084 20143118 chr3L 20143164 20143191 4 78 1.0 0.5 0.8 2.2 107 chr3L 20143084 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143191 intergenic not near genes chr3L_4_20140001 chr3L_20140001 RAL-233 650 chr3L 20257347 20257358 chr3L 20258465 20258478 pogo 4 1120 0.5 4.0 2.2 1.2 1131 chr3L 20257347 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258478 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-233 651 chr3L 20283682 20283705 chr3L 20283766 20283789 6 84 1.0 1.5 1.2 2.7 107 chr3L 20283682 intron gogo - chr3L 20283736 intron gogo - chr3L 20283789 intron gogo - chr3L_6_20280001 chr3L_20280001 RAL-233 652 chr3L 20345604 20345638 chr3L 20345685 20345719 7 80 1.0 0.0 0.5 4.7 115 chr3L 20345604 intergenic Rbbp5 - chr3L 20345662 intergenic Rbbp5 - chr3L 20345719 intergenic Rbbp5 - chr3L_7_20345001 chr3L_20345001 RAL-233 653 chr3L 20476756 20476782 chr3L 20484354 20484380 springer 5 7599 1.0 0.5 0.8 2.8 7624 chr3L 20476756 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484380 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-233 654 chr3L 20567612 20567623 chr3L 20567675 20567698 4 73 5.0 1.5 3.2 1.0 86 chr3L 20567612 intergenic not near genes chr3L 20567655 intergenic not near genes chr3L 20567698 intergenic not near genes chr3L_4_20565001 chr3L_20565001 RAL-233 655 chr3L 20849270 20849291 chr3L 20849349 20849370 4 79 1.0 0.5 0.8 2.2 100 chr3L 20849270 intron CG32432 - chr3L 20849320 intron CG32432 - chr3L 20849370 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-233 656 chr3L 21014918 21014933 chr3L 21023399 21023414 Tirant 4 8480 3.5 5.0 4.2 0.8 8496 chr3L 21014918 intron skd - chr3L 21019166 intron skd - chr3L 21023414 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-233 657 chr3L 21014937 21014948 chr3L 21023396 21023429 Tirant 7 8473 1.0 4.5 2.8 1.8 8492 chr3L 21014937 intron skd - chr3L 21019183 intron skd - chr3L 21023429 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-233 658 chr3L 21150934 21150949 chr3L 21151070 21151085 5 136 1.5 2.0 1.8 1.8 151 chr3L 21150934 intron Ac78C - chr3L 21151010 intron Ac78C - chr3L 21151085 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-233 659 chr3L 21151869 21151892 chr3L 21156953 21156975 flea 7 5082 1.0 1.5 1.2 3.2 5106 chr3L 21151869 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156975 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-233 660 chr3L 21160965 21160993 chr3L 21161061 21161089 8 96 4.0 2.0 3.0 2.0 124 chr3L 21160965 5` UTR Ac78C - chr3L 21161027 intron Ac78C - chr3L 21161089 intron Ac78C - chr3L_8_21160001 chr3L_21160001 RAL-233 661 chr3L 21170063 21170086 chr3L 21170284 21170312 4 222 2.0 5.0 3.5 0.9 249 chr3L 21170063 intron Ac78C - chr3L 21170188 intron Ac78C - chr3L 21170312 intron Ac78C - chr3L_4_21170001 chr3L_21170001 RAL-233 662 chr3L 21243748 21243764 chr3L 21251310 21251325 412 6 7562 4.0 2.0 3.0 1.5 7577 chr3L 21243748 intron Eip78C + chr3L 21247536 intron Eip78C + chr3L 21251325 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-233 663 chr3L 21415138 21415162 chr3L 21415221 21415245 8 83 1.0 2.5 1.8 2.9 107 chr3L 21415138 intron rgn + chr3L 21415192 intron rgn + chr3L 21415245 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-233 664 chr3L 21498834 21498868 chr3L 21500470 21500477 1360 6 1629 2.0 1.0 1.5 2.4 1643 chr3L 21498834 intron Glg1 - chr3L 21499656 intron Glg1 - chr3L 21500477 intron Glg1 - chr3L_6_21495001 chr3L_21495001 RAL-233 665 chr3L 21749317 21749351 chr3L 21754473 21754511 Doc 6 5159 2.0 0.0 1.0 3.0 5194 chr3L 21749317 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754511 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-233 666 chr3L 21849507 21849522 chr3L 21849589 21849601 8 81 1.5 1.5 1.5 3.2 94 chr3L 21849507 intron mub + chr3L 21849554 intron mub + chr3L 21849601 intron mub + chr3L_8_21845001 chr3L_21845001 RAL-233 667 chr3L 21901025 21901045 chr3L 21901118 21901138 5 92 3.5 3.5 3.5 1.1 113 chr3L 21901025 intron mub + chr3L 21901082 intron mub + chr3L 21901138 intron mub + chr3L_5_21900001 chr3L_21900001 RAL-233 668 chr3L 22016383 22016397 chr3L 22016481 22016493 4 99 0.0 0.0 0.0 4.0 110 chr3L 22016383 intergenic not near genes chr3L 22016438 intergenic not near genes chr3L 22016493 intergenic not near genes chr3L_4_22015001 chr3L_22015001 RAL-233 669 chr3L 22033692 22033710 chr3L 22033770 22033787 5 78 0.5 1.0 0.8 2.8 95 chr3L 22033692 intergenic not near genes chr3L 22033740 intergenic not near genes chr3L 22033787 intergenic not near genes chr3L_5_22030001 chr3L_22030001 RAL-233 670 chr3L 22046181 22046201 chr3L 22046284 22046304 8 103 2.5 1.0 1.8 2.9 123 chr3L 22046181 intron Oct-TyrR + chr3L 22046242 intron Oct-TyrR + chr3L 22046304 intron Oct-TyrR + chr3L_8_22045001 chr3L_22045001 RAL-233 671 chr3L 22099673 22099708 chr3L 22105859 22105894 3S18 9 6186 1.0 1.5 1.2 4.1 6221 chr3L 22099673 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105894 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-233 672 chr3L 22124951 22124978 chr3L 22125107 22125134 7 156 2.5 2.5 2.5 2.0 183 chr3L 22124951 intergenic not near genes chr3L 22125042 intergenic not near genes chr3L 22125134 intergenic not near genes chr3L_7_22125001 chr3L_22125001 RAL-233 673 chr3L 22130501 22130523 chr3L 22130647 22130669 4 146 0.0 2.0 1.0 2.0 168 chr3L 22130501 intergenic not near genes chr3L 22130585 intergenic not near genes chr3L 22130669 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-233 674 chr3L 22361944 22361967 chr3L 22362021 22362044 4 76 6.0 1.0 3.5 0.9 100 chr3L 22361944 intron Ten-m - chr3L 22361994 intron Ten-m - chr3L 22362044 intron Ten-m - chr3L_4_22360001 chr3L_22360001 RAL-233 675 chr3L 22395606 22395621 chr3L 22395678 22395704 7 80 3.0 2.0 2.5 2.0 98 chr3L 22395606 intron Ten-m - chr3L 22395655 intron Ten-m - chr3L 22395704 intron Ten-m - chr3L_7_22395001 chr3L_22395001 RAL-233 676 chr3L 22522700 22522728 chr3L 22522777 22522805 5 77 1.5 1.0 1.2 2.3 105 chr3L 22522700 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522805 intergenic not near genes chr3L_5_22520001 chr3L_22520001 RAL-233 677 chr3L 22577622 22577651 chr3L 22582408 22582439 Doc 13 4785 0.5 5.5 3.0 3.2 4817 chr3L 22577622 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582439 3` UTR CG14459 - chr3L_13_22580001 chr3L_22580001 RAL-233 678 chr3L 22853474 22853721 chr3L 22853561 22853807 9 85 1.0 3.5 2.2 2.8 333 chr3L 22853474 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853640 5` UTR CR43426 + chr3L 22853807 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-233 679 chr3L 22865984 22866004 chr3L 22867117 22867137 Doc 5 1133 1.5 0.0 0.8 2.8 1153 chr3L 22865984 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867137 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-233 680 chr3L 23008196 23008222 chr3L 23008272 23008298 5 76 1.5 0.5 1.0 2.5 102 chr3L 23008196 intron nrm + chr3L 23008247 intron nrm + chr3L 23008298 intron nrm + chr3L_5_23005001 chr3L_23005001 RAL-233 681 chr3L 23042224 23042253 chr3L 23048977 23049006 gypsy6 13 6750 4.5 0.0 2.2 4.1 6782 chr3L 23042224 intergenic not near genes chr3L 23045615 intergenic not near genes chr3L 23049006 intergenic not near genes chr3L_13_23045001 chr3L_23045001 RAL-233 682 chr3L 23182260 23182295 chr3L 23182374 23182405 6 110 2.0 3.0 2.5 1.7 145 chr3L 23182260 intron CG34031 + chr3L 23182332 intron CG34031 + chr3L 23182405 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-233 683 chr3L 23402293 23402322 chr3L 23402370 23402393 7 80 0.0 1.5 0.8 3.9 100 chr3L 23402293 intergenic not near genes chr3L 23402343 intergenic not near genes chr3L 23402393 intergenic not near genes chr3L_7_23400001 chr3L_23400001 RAL-233 684 chr3L 23875537 23875556 chr3L 23875609 23875630 5 77 0.5 0.5 0.5 3.3 93 chr3L 23875537 intron CG40470 - chr3L 23875584 intron CG40470 - chr3L 23875630 intron CG40470 - chr3L_5_23875001 chr3L_23875001 RAL-233 685 chr3L 24168788 24168818 chr3L 24176115 24176142 ZAM 9 7322 4.5 3.0 3.8 1.9 7354 chr3L 24168788 intron Snap25 + chr3L 24172465 intron Snap25 + chr3L 24176142 intron Snap25 + chr3L_9_24170001 chr3L_24170001 RAL-233 686 chr3L 25354047 25354071 chr3L 25354226 25354253 4 180 1.5 0.5 1.0 2.0 206 chr3L 25354047 intergenic not near genes chr3L 25354150 intergenic not near genes chr3L 25354253 intergenic not near genes chr3L_4_25350001 chr3L_25350001 RAL-233 687 chr3R 2534158 2534166 chr3R 2541726 2541735 5 7568 11.0 8.5 9.8 0.5 7577 chr3R 2534158 intergenic not near genes chr3R 2537946 intergenic not near genes chr3R 2541735 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-233 688 chr3R 4063820 4063836 chr3R 4069091 4069102 6 5276 5.5 4.5 5.0 1.0 5282 chr3R 4063820 intergenic not near genes chr3R 4066461 intergenic not near genes chr3R 4069102 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-233 689 chr3R 4609546 4609581 chr3R 4610710 4610745 1360 7 1164 1.0 2.0 1.5 2.8 1199 chr3R 4609546 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-233 690 chr3R 4753259 4753271 chr3R 4757540 4757561 F-element 5 4296 2.5 5.5 4.0 1.0 4302 chr3R 4753259 intron,intron atms +,CG44098 - chr3R 4755410 intron,intron atms +,CG44098 - chr3R 4757561 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-233 691 chr3R 4769165 4769188 chr3R 4769243 4769266 8 78 1.0 1.5 1.2 3.6 101 chr3R 4769165 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-233 692 chr3R 4861569 4861587 chr3R 4861650 4861668 8 81 6.5 5.0 5.8 1.2 99 chr3R 4861569 intron opa + chr3R 4861618 intron opa + chr3R 4861668 intron opa + chr3R_8_4860001 chr3R_4860001 RAL-233 693 chr3R 4887495 4887512 chr3R 4894854 4894884 rover 4 7371 0.0 6.0 3.0 1.0 7389 chr3R 4887495 intergenic not near genes chr3R 4891190 intergenic not near genes chr3R 4894884 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-233 694 chr3R 4966019 4966034 chr3R 4966110 4966125 5 92 1.5 2.5 2.0 1.7 106 chr3R 4966019 intron CG1124 + chr3R 4966072 intron CG1124 + chr3R 4966125 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-233 695 chr3R 4984905 4984914 chr3R 4985004 4985018 4 102 3.5 3.0 3.2 1.0 113 chr3R 4984905 3` UTR CR43424 - chr3R 4984962 3` UTR CR43424 - chr3R 4985018 3` UTR CR43424 - chr3R_4_4980001 chr3R_4980001 RAL-233 696 chr3R 5039054 5039069 chr3R 5039152 5039167 9 98 5.5 3.5 4.5 1.6 113 chr3R 5039054 intergenic not near genes chr3R 5039110 intergenic not near genes chr3R 5039167 intergenic not near genes chr3R_9_5035001 chr3R_5035001 RAL-233 697 chr3R 5081126 5081135 chr3R 5081233 5081242 4 107 1.0 1.5 1.2 1.8 116 chr3R 5081126 3` UTR corto - chr3R 5081184 3` UTR corto - chr3R 5081242 3` UTR corto - chr3R_4_5080001 chr3R_5080001 RAL-233 698 chr3R 5338415 5338428 chr3R 5343583 5343605 Rt1c 7 5170 3.5 11.0 7.2 0.9 5190 chr3R 5338415 intron mtd - chr3R 5341010 intron mtd - chr3R 5343605 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-233 699 chr3R 5746018 5746046 chr3R 5746259 5746287 pogo 7 241 0.5 2.5 1.5 2.8 269 chr3R 5746018 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-233 700 chr3R 5772393 5772405 chr3R 5772551 5772563 4 158 0.5 1.5 1.0 2.0 170 chr3R 5772393 intron CG2082 - chr3R 5772478 intron CG2082 - chr3R 5772563 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-233 701 chr3R 5822400 5822409 chr3R 5823567 5823576 1360 4 1166 1.0 6.0 3.5 0.9 1176 chr3R 5822400 3` UTR CG2023 - chr3R 5822988 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-233 702 chr3R 5895962 5895974 chr3R 5896176 5896183 4 213 2.0 1.5 1.8 1.4 221 chr3R 5895962 intron CG34113 - chr3R 5896072 intron CG34113 - chr3R 5896183 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-233 703 chr3R 5927561 5927579 chr3R 5927801 5927819 pogo 4 240 0.0 0.5 0.2 3.3 258 chr3R 5927561 intron CG34113 - chr3R 5927690 intron CG34113 - chr3R 5927819 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-233 704 chr3R 6006335 6006355 chr3R 6006420 6006440 5 84 2.0 1.5 1.8 1.8 105 chr3R 6006335 intron Rm62 - chr3R 6006388 intron Rm62 - chr3R 6006440 intron Rm62 - chr3R_5_6005001 chr3R_6005001 RAL-233 705 chr3R 6015961 6015992 chr3R 6024442 6024473 Tirant 9 8481 2.5 3.5 3.0 2.2 8512 chr3R 6015961 intergenic not near genes chr3R 6020217 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-233 706 chr3R 6048444 6048476 chr3R 6048527 6048559 4 82 3.0 2.5 2.8 1.1 115 chr3R 6048444 intergenic not near genes chr3R 6048502 intergenic not near genes chr3R 6048559 intergenic not near genes chr3R_4_6045001 chr3R_6045001 RAL-233 707 chr3R 6158511 6158537 chr3R 6167094 6167120 Tirant 9 8581 2.5 4.0 3.2 2.1 8609 chr3R 6158511 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-233 708 chr3R 6610046 6610076 chr3R 6610198 6610228 8 152 2.0 1.5 1.8 2.9 182 chr3R 6610046 intergenic not near genes chr3R 6610137 intergenic not near genes chr3R 6610228 intergenic not near genes chr3R_8_6610001 chr3R_6610001 RAL-233 709 chr3R 6639909 6639934 chr3R 6639987 6640009 4 77 2.0 0.0 1.0 2.0 100 chr3R 6639909 intergenic not near genes chr3R 6639959 intergenic not near genes chr3R 6640009 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-233 710 chr3R 6655771 6655794 chr3R 6656043 6656066 6 271 2.0 1.5 1.8 2.1 295 chr3R 6655771 exon Taf1 + chr3R 6655918 3` UTR Taf1 + chr3R 6656066 intergenic Taf1 +,CG1307 - chr3R_6_6655001 chr3R_6655001 RAL-233 711 chr3R 6670568 6670595 chr3R 6670677 6670704 6 109 0.0 1.5 0.8 3.3 136 chr3R 6670568 intron lab - chr3R 6670636 intron lab - chr3R 6670704 intron lab - chr3R_6_6670001 chr3R_6670001 RAL-233 712 chr3R 6737501 6737516 chr3R 6739288 6739303 Doc 4 1787 5.0 6.0 5.5 0.6 1802 chr3R 6737501 intron pb - chr3R 6738402 intron pb - chr3R 6739303 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-233 713 chr3R 6737518 6737531 chr3R 6739285 6739314 Doc 5 1782 4.0 5.5 4.8 0.9 1796 chr3R 6737518 intron pb - chr3R 6738416 intron pb - chr3R 6739314 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-233 714 chr3R 6914743 6914767 chr3R 6914839 6914865 11 98 2.0 5.5 3.8 2.3 122 chr3R 6914743 intron Antp - chr3R 6914804 intron Antp - chr3R 6914865 intron Antp - chr3R_11_6910001 chr3R_6910001 RAL-233 715 chr3R 7092783 7092816 chr3R 7093345 7093380 10 564 0.5 1.5 1.0 5.0 597 chr3R 7092783 3` UTR CR43685 - chr3R 7093082 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_10_7090001 chr3R_7090001 RAL-233 716 chr3R 7103297 7103319 chr3R 7103364 7103388 4 72 2.5 2.5 2.5 1.1 91 chr3R 7103297 intron Alh - chr3R 7103342 intron Alh - chr3R 7103388 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-233 717 chr3R 7621528 7621562 chr3R 7621619 7621650 5 89 0.0 1.5 0.8 2.8 122 chr3R 7621528 intron CG34127 - chr3R 7621589 intron CG34127 - chr3R 7621650 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-233 718 chr3R 7655175 7655202 chr3R 7655318 7655345 11 142 3.0 1.5 2.2 3.4 170 chr3R 7655175 intergenic not near genes chr3R 7655260 intergenic not near genes chr3R 7655345 intergenic not near genes chr3R_11_7655001 chr3R_7655001 RAL-233 719 chr3R 7724457 7724471 chr3R 7724546 7724561 4 87 2.0 5.5 3.8 0.8 104 chr3R 7724457 3` UTR CG2616 + chr3R 7724509 3` UTR CG2616 + chr3R 7724561 3` UTR CG2616 + chr3R_4_7720001 chr3R_7720001 RAL-233 720 chr3R 7729470 7729499 chr3R 7737405 7737437 Stalker2 6 7934 1.0 2.0 1.5 2.4 7967 chr3R 7729470 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-233 721 chr3R 7744938 7744965 chr3R 7745202 7745205 5 258 0.5 4.0 2.2 1.6 267 chr3R 7744938 intergenic not near genes chr3R 7745072 intergenic not near genes chr3R 7745205 intergenic not near genes chr3R_5_7745001 chr3R_7745001 RAL-233 722 chr3R 7830301 7830330 chr3R 7830452 7830478 5 150 2.0 1.5 1.8 1.8 177 chr3R 7830301 intron CG34384 + chr3R 7830390 intron CG34384 + chr3R 7830478 intron CG34384 + chr3R_5_7830001 chr3R_7830001 RAL-233 723 chr3R 8094408 8094429 chr3R 8099713 8099734 Transpac 5 5305 3.0 0.0 1.5 2.0 5326 chr3R 8094408 intron CG7900 + chr3R 8097071 intron CG7900 + chr3R 8099734 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-233 724 chr3R 8315000 8315017 chr3R 8315077 8315092 7 77 2.0 3.0 2.5 2.0 92 chr3R 8315000 3` UTR Coq2 - chr3R 8315046 3` UTR Coq2 - chr3R 8315092 3` UTR Coq2 - chr3R_7_8315001 chr3R_8315001 RAL-233 725 chr3R 8339247 8339247 chr3R 21907534 21907536 6 13568288 14.0 15.5 14.8 0.4 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-233 726 chr3R 8360633 8360637 chr3R 8365182 8365189 4 4550 9.5 17.5 13.5 0.3 4556 chr3R 8360633 exon CG9684 - chr3R 8362911 exon CG7963 + chr3R 8365189 exon CG45263 - chr3R_4_8360001 chr3R_8360001 RAL-233 727 chr3R 8403005 8403038 chr3R 8412171 8412203 roo 11 9161 2.5 3.0 2.8 2.9 9198 chr3R 8403005 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-233 728 chr3R 8424719 8424748 chr3R 8424855 8424882 9 136 1.5 3.5 2.5 2.6 163 chr3R 8424719 intron CG45263 - chr3R 8424800 intron CG45263 - chr3R 8424882 intron CG45263 - chr3R_9_8420001 chr3R_8420001 RAL-233 729 chr3R 8439534 8439537 chr3R 8439587 8439613 4 62 2.0 1.0 1.5 1.6 79 chr3R 8439534 intron CG45263 - chr3R 8439574 intron CG45263 - chr3R 8439613 intron CG45263 - chr3R_4_8435001 chr3R_8435001 RAL-233 730 chr3R 8478803 8478836 chr3R 8478885 8478918 10 82 3.0 1.0 2.0 3.3 115 chr3R 8478803 intergenic not near genes chr3R 8478860 intergenic not near genes chr3R 8478918 intergenic not near genes chr3R_10_8475001 chr3R_8475001 RAL-233 731 chr3R 8570476 8570506 chr3R 8575112 8575138 HMS-Beagle 8 4635 4.0 2.0 3.0 2.0 4662 chr3R 8570476 intergenic not near genes chr3R 8572807 intergenic not near genes chr3R 8575138 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-233 732 chr3R 8601778 8601799 chr3R 8610927 8610928 roo 7 9149 5.0 3.5 4.2 1.3 9150 chr3R 8601778 intron 5-HT2B + chr3R 8606353 intron 5-HT2B + chr3R 8610928 intron 5-HT2B + chr3R_7_8605001 chr3R_8605001 RAL-233 733 chr3R 8707362 8707381 chr3R 8709803 8709822 jockey 4 2441 2.5 4.0 3.2 1.0 2460 chr3R 8707362 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709822 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-233 734 chr3R 8917893 8917910 chr3R 8917973 8917990 5 80 2.0 4.0 3.0 1.2 97 chr3R 8917893 intron pyd - chr3R 8917942 intron pyd - chr3R 8917990 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-233 735 chr3R 9101837 9101866 chr3R 9101935 9101964 6 98 1.5 2.0 1.8 2.1 127 chr3R 9101837 intron pum - chr3R 9101900 intron pum - chr3R 9101964 intron pum - chr3R_6_9100001 chr3R_9100001 RAL-233 736 chr3R 9201593 9201624 chr3R 9201672 9201703 4 75 3.0 1.0 2.0 1.3 110 chr3R 9201593 intron pum - chr3R 9201648 intron pum - chr3R 9201703 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-233 737 chr3R 9278779 9278801 chr3R 9284039 9284060 Rt1a 5 5260 2.5 1.5 2.0 1.7 5281 chr3R 9278779 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284060 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-233 738 chr3R 9319581 9319603 chr3R 9320016 9320038 jockey 5 434 1.0 2.0 1.5 2.0 457 chr3R 9319581 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-233 739 chr3R 9620956 9620956 chr3R 21907534 21907536 6 12286579 6.5 15.5 11.0 0.5 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-233 740 chr3R 9899021 9899045 chr3R 9899119 9899124 5 94 0.5 2.0 1.2 2.3 103 chr3R 9899021 intron Glut4EF + chr3R 9899072 intron Glut4EF + chr3R 9899124 intron Glut4EF + chr3R_5_9895001 chr3R_9895001 RAL-233 741 chr3R 9996306 9996326 chr3R 9996644 9996663 5 337 4.0 2.0 3.0 1.2 357 chr3R 9996306 exon Gr85a - chr3R 9996484 exon Gr85a - chr3R 9996663 exon Gr85a - chr3R_5_9995001 chr3R_9995001 RAL-233 742 chr3R 10174126 10174141 chr3R 10174208 10174223 4 81 5.0 1.0 3.0 1.0 97 chr3R 10174126 intron CG12814 - chr3R 10174174 intron CG12814 - chr3R 10174223 intron CG12814 - chr3R_4_10170001 chr3R_10170001 RAL-233 743 chr3R 10563465 10563487 chr3R 10563563 10563577 5 95 2.5 6.5 4.5 0.9 112 chr3R 10563465 intron hth - chr3R 10563521 intron hth - chr3R 10563577 intron hth - chr3R_5_10560001 chr3R_10560001 RAL-233 744 chr3R 10708202 10708224 chr3R 10708304 10708336 8 108 3.0 1.5 2.2 2.5 134 chr3R 10708202 exon CG31278 - chr3R 10708269 5` UTR CG31278 - chr3R 10708336 5` UTR CG31278 - chr3R_8_10705001 chr3R_10705001 RAL-233 745 chr3R 10727650 10727677 chr3R 10727730 10727757 11 78 3.0 3.5 3.2 2.6 107 chr3R 10727650 intergenic not near genes chr3R 10727704 intergenic not near genes chr3R 10727757 intergenic not near genes chr3R_11_10725001 chr3R_10725001 RAL-233 746 chr3R 10878139 10878173 chr3R 10878378 10878412 14 238 3.5 2.0 2.8 3.7 273 chr3R 10878139 3` UTR Sodh-2 + chr3R 10878276 3` UTR CG14695 - chr3R 10878412 exon CG14695 - chr3R_14_10875001 chr3R_10875001 RAL-233 747 chr3R 10919687 10919715 chr3R 10919765 10919793 8 77 1.0 1.5 1.2 3.6 106 chr3R 10919687 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_8_10915001 chr3R_10915001 RAL-233 748 chr3R 10924756 10924772 chr3R 10924847 10924862 4 90 2.0 1.5 1.8 1.4 106 chr3R 10924756 intergenic not near genes chr3R 10924809 intergenic not near genes chr3R 10924862 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-233 749 chr3R 11151672 11151677 chr3R 11156565 11156575 4 4894 14.0 1.5 7.8 0.5 4903 chr3R 11151672 3` UTR Ugt86Di - chr3R 11154124 intergenic Ugt86Di - chr3R 11156575 intergenic Ugt86Dc + chr3R_4_11150001 chr3R_11150001 RAL-233 750 chr3R 11307212 11307221 chr3R 11307280 11307305 4 80 2.0 3.0 2.5 1.1 93 chr3R 11307212 intergenic not near genes chr3R 11307258 intergenic not near genes chr3R 11307305 intergenic not near genes chr3R_4_11305001 chr3R_11305001 RAL-233 751 chr3R 11533941 11533966 chr3R 11534025 11534050 4 84 0.0 1.5 0.8 2.2 109 chr3R 11533941 3` UTR dpr4 - chr3R 11533996 3` UTR dpr4 - chr3R 11534050 3` UTR dpr4 - chr3R_4_11530001 chr3R_11530001 RAL-233 752 chr3R 11734161 11734186 chr3R 11734279 11734300 11 116 3.5 3.0 3.2 2.6 139 chr3R 11734161 intergenic not near genes chr3R 11734230 intergenic not near genes chr3R 11734300 intergenic not near genes chr3R_11_11730001 chr3R_11730001 RAL-233 753 chr3R 11841060 11841094 chr3R 11846251 11846285 BS 8 5188 6.0 2.0 4.0 1.6 5225 chr3R 11841060 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846285 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-233 754 chr3R 11916428 11916456 chr3R 11916507 11916534 5 78 0.5 1.0 0.8 2.8 106 chr3R 11916428 intron Cad87A - chr3R 11916481 intron Cad87A - chr3R 11916534 intron Cad87A - chr3R_5_11915001 chr3R_11915001 RAL-233 755 chr3R 12045176 12045191 chr3R 12045252 12045267 4 76 3.0 1.0 2.0 1.3 91 chr3R 12045176 intergenic not near genes chr3R 12045222 intergenic not near genes chr3R 12045267 intergenic not near genes chr3R_4_12045001 chr3R_12045001 RAL-233 756 chr3R 12081995 12082029 chr3R 12082071 12082105 7 75 2.5 0.5 1.5 2.8 110 chr3R 12081995 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082105 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-233 757 chr3R 12175229 12175262 chr3R 12175309 12175343 6 79 3.5 0.0 1.8 2.1 114 chr3R 12175229 intergenic not near genes chr3R 12175286 intergenic not near genes chr3R 12175343 intergenic not near genes chr3R_6_12175001 chr3R_12175001 RAL-233 758 chr3R 12183187 12183205 chr3R 12183273 12183291 5 86 0.5 3.5 2.0 1.7 104 chr3R 12183187 intergenic not near genes chr3R 12183239 intergenic not near genes chr3R 12183291 intergenic not near genes chr3R_5_12180001 chr3R_12180001 RAL-233 759 chr3R 12267856 12267883 chr3R 12267936 12267963 4 78 1.5 0.5 1.0 2.0 107 chr3R 12267856 intron svp + chr3R 12267910 intron svp + chr3R 12267963 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-233 760 chr3R 12274046 12274078 chr3R 12274131 12274152 5 76 2.5 1.5 2.0 1.7 106 chr3R 12274046 intron svp + chr3R 12274099 intron svp + chr3R 12274152 intron svp + chr3R_5_12270001 chr3R_12270001 RAL-233 761 chr3R 12314230 12314239 chr3R 12314344 12314353 5 113 4.0 1.0 2.5 1.4 123 chr3R 12314230 intergenic not near genes chr3R 12314292 intergenic not near genes chr3R 12314353 intergenic not near genes chr3R_5_12310001 chr3R_12310001 RAL-233 762 chr3R 12314248 12314255 chr3R 12314341 12314341 5 98 3.0 1.0 2.0 1.7 93 chr3R 12314248 intergenic not near genes chr3R 12314294 intergenic not near genes chr3R 12314341 intergenic not near genes chr3R_5_12310001 chr3R_12310001 RAL-233 763 chr3R 12374313 12374324 chr3R 12374555 12374566 4 240 4.0 4.0 4.0 0.8 253 chr3R 12374313 exon GstD4 + chr3R 12374440 exon GstD4 + chr3R 12374566 exon GstD4 + chr3R_4_12370001 chr3R_12370001 RAL-233 764 chr3R 12685429 12685451 chr3R 12685603 12685624 7 173 3.5 1.0 2.2 2.2 195 chr3R 12685429 intron kar - chr3R 12685526 intron kar - chr3R 12685624 intron kar - chr3R_7_12685001 chr3R_12685001 RAL-233 765 chr3R 12758132 12758161 chr3R 12758213 12758241 4 80 0.5 0.5 0.5 2.7 109 chr3R 12758132 intron beat-Vc - chr3R 12758186 intron beat-Vc - chr3R 12758241 intron beat-Vc - chr3R_4_12755001 chr3R_12755001 RAL-233 766 chr3R 12876960 12876983 chr3R 12877035 12877066 4 81 1.5 3.5 2.5 1.1 106 chr3R 12876960 intergenic not near genes chr3R 12877013 intergenic not near genes chr3R 12877066 intergenic not near genes chr3R_4_12875001 chr3R_12875001 RAL-233 767 chr3R 12920167 12920182 chr3R 12925356 12925385 copia 6 5200 2.5 1.0 1.8 2.1 5218 chr3R 12920167 intron beat-Vb + chr3R 12922776 intron beat-Vb + chr3R 12925385 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-233 768 chr3R 12947531 12947565 chr3R 12947611 12947645 9 80 0.5 0.5 0.5 6.0 114 chr3R 12947531 intergenic not near genes chr3R 12947588 intergenic not near genes chr3R 12947645 intergenic not near genes chr3R_9_12945001 chr3R_12945001 RAL-233 769 chr3R 12952282 12952314 chr3R 12952404 12952438 12 123 4.5 4.5 4.5 2.2 156 chr3R 12952282 intron grsm - chr3R 12952360 intron grsm - chr3R 12952438 intron grsm - chr3R_12_12950001 chr3R_12950001 RAL-233 770 chr3R 12972558 12972582 chr3R 12972697 12972721 6 139 1.0 0.5 0.8 3.3 163 chr3R 12972558 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-233 771 chr3R 13018157 13018175 chr3R 13018236 13018253 4 78 3.0 2.0 2.5 1.1 96 chr3R 13018157 intron CtBP + chr3R 13018205 intron CtBP + chr3R 13018253 intron CtBP + chr3R_4_13015001 chr3R_13015001 RAL-233 772 chr3R 13067844 13067857 chr3R 13067924 13067929 4 78 4.0 2.5 3.2 1.0 85 chr3R 13067844 intron sim + chr3R 13067886 intron sim + chr3R 13067929 intron sim + chr3R_4_13065001 chr3R_13065001 RAL-233 773 chr3R 13151390 13151393 chr3R 13151491 13151515 4 113 0.0 1.5 0.8 2.2 125 chr3R 13151390 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151452 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151515 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13150001 chr3R_13150001 RAL-233 774 chr3R 13391631 13391669 chr3R 13391708 13391747 4 78 1.5 1.0 1.2 1.8 116 chr3R 13391631 intron CCHa2 - chr3R 13391689 intron CCHa2 - chr3R 13391747 intron CCHa2 - chr3R_4_13390001 chr3R_13390001 RAL-233 775 chr3R 13394669 13394708 chr3R 13395018 13395056 9 346 0.5 4.0 2.2 2.8 387 chr3R 13394669 intron CCHa2 - chr3R 13394862 intron CCHa2 - chr3R 13395056 intron CCHa2 - chr3R_9_13390001 chr3R_13390001 RAL-233 776 chr3R 13525202 13525209 chr3R 13525290 13525298 4 95 3.5 3.0 3.2 1.0 96 chr3R 13525202 intergenic not near genes chr3R 13525250 intergenic not near genes chr3R 13525298 intergenic not near genes chr3R_4_13525001 chr3R_13525001 RAL-233 777 chr3R 13693028 13693028 chr3R 21907534 21907536 9 8214507 6.0 15.5 10.8 0.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-233 778 chr3R 13729114 13729132 chr3R 13729189 13729208 7 75 2.5 5.5 4.0 1.4 94 chr3R 13729114 intron CG34383 + chr3R 13729161 intron CG34383 + chr3R 13729208 intron CG34383 + chr3R_7_13725001 chr3R_13725001 RAL-233 779 chr3R 13863678 13863702 chr3R 13863766 13863789 10 86 2.5 2.0 2.2 3.1 111 chr3R 13863678 intergenic not near genes chr3R 13863734 intergenic not near genes chr3R 13863789 intergenic not near genes chr3R_10_13860001 chr3R_13860001 RAL-233 780 chr3R 14179081 14179104 chr3R 14179157 14179179 9 74 7.5 4.5 6.0 1.3 98 chr3R 14179081 intron Dop1R1 - chr3R 14179130 intron Dop1R1 - chr3R 14179179 intron Dop1R1 - chr3R_9_14175001 chr3R_14175001 RAL-233 781 chr3R 14194426 14194441 chr3R 14203575 14203590 roo 4 9149 9.0 1.0 5.0 0.7 9164 chr3R 14194426 intron Dop1R1 - chr3R 14199008 intron Dop1R1 - chr3R 14203590 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-233 782 chr3R 14246410 14246417 chr3R 14247887 14247913 jockey 5 1490 5.0 5.0 5.0 0.8 1503 chr3R 14246410 intergenic not near genes chr3R 14247162 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-233 783 chr3R 14253703 14253732 chr3R 14253782 14253811 6 78 0.0 1.0 0.5 4.0 108 chr3R 14253703 intron Aats-met - chr3R 14253757 intron Aats-met - chr3R 14253811 intron Aats-met - chr3R_6_14250001 chr3R_14250001 RAL-233 784 chr3R 14535590 14535618 chr3R 14535667 14535693 5 74 3.5 4.0 3.8 1.0 103 chr3R 14535590 intron Pde6 - chr3R 14535642 intron Pde6 - chr3R 14535693 intron Pde6 - chr3R_5_14535001 chr3R_14535001 RAL-233 785 chr3R 14624711 14624743 chr3R 14624874 14624906 5 163 1.5 0.5 1.0 2.5 195 chr3R 14624711 intron put - chr3R 14624808 intron put - chr3R 14624906 intron put - chr3R_5_14620001 chr3R_14620001 RAL-233 786 chr3R 14832257 14832280 chr3R 14832414 14832416 4 152 1.0 3.5 2.2 1.2 159 chr3R 14832257 intron btsz - chr3R 14832336 intron btsz - chr3R 14832416 intron btsz - chr3R_4_14830001 chr3R_14830001 RAL-233 787 chr3R 14833593 14833603 chr3R 14833694 14833704 5 100 3.0 2.5 2.8 1.3 111 chr3R 14833593 intron btsz - chr3R 14833648 intron btsz - chr3R 14833704 intron btsz - chr3R_5_14830001 chr3R_14830001 RAL-233 788 chr3R 14988493 14988529 chr3R 14988598 14988599 4 96 1.5 1.0 1.2 1.8 106 chr3R 14988493 intergenic not near genes chr3R 14988546 intergenic not near genes chr3R 14988599 intergenic not near genes chr3R_4_14985001 chr3R_14985001 RAL-233 789 chr3R 15004197 15004226 chr3R 15004283 15004294 4 82 1.5 2.0 1.8 1.4 97 chr3R 15004197 intergenic CR45599 - chr3R 15004246 intergenic CR45599 - chr3R 15004294 3` UTR CR45599 - chr3R_4_15000001 chr3R_15000001 RAL-233 790 chr3R 15162559 15162579 chr3R 15167326 15167346 F-element 5 4767 1.0 1.5 1.2 2.3 4787 chr3R 15162559 intron Gyc88E + chr3R 15164952 intron Gyc88E + chr3R 15167346 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-233 791 chr3R 15286987 15286987 chr3R 21907535 21907536 4 6620549 13.0 16.0 14.5 0.3 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-233 792 chr3R 15416254 15416284 chr3R 15416331 15416364 6 79 2.5 2.5 2.5 1.7 110 chr3R 15416254 3` UTR Atx2 + chr3R 15416309 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-233 793 chr3R 15601165 15601187 chr3R 15608687 15608708 412 6 7522 4.5 2.5 3.5 1.3 7543 chr3R 15601165 intergenic not near genes chr3R 15604936 intergenic not near genes chr3R 15608708 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-233 794 chr3R 15618735 15618763 chr3R 15626209 15626237 blood 5 7474 1.0 2.5 1.8 1.8 7502 chr3R 15618735 intergenic not near genes chr3R 15622486 intergenic not near genes chr3R 15626237 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-233 795 chr3R 15646789 15646797 chr3R 15646872 15646880 4 83 1.0 1.0 1.0 2.0 91 chr3R 15646789 intergenic not near genes chr3R 15646834 intergenic not near genes chr3R 15646880 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-233 796 chr3R 15691189 15691328 chr3R 15691293 15691412 5 93 0.0 0.0 0.0 5.0 223 chr3R 15691189 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691412 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-233 797 chr3R 15790150 15790266 chr3R 15790258 15790383 5 112 2.0 1.5 1.8 1.8 233 chr3R 15790150 exon c(3)G - chr3R 15790266 exon c(3)G - chr3R 15790383 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-233 798 chr3R 15790391 15790404 chr3R 15790595 15790604 4 204 5.5 10.0 7.8 0.5 213 chr3R 15790391 exon c(3)G - chr3R 15790498 exon c(3)G - chr3R 15790604 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-233 799 chr3R 15790849 15790872 chr3R 15790965 15790988 5 116 4.5 6.0 5.2 0.8 139 chr3R 15790849 exon c(3)G - chr3R 15790918 intron c(3)G - chr3R 15790988 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-233 800 chr3R 15891665 15891687 chr3R 15892057 15892079 4 392 0.0 2.5 1.2 1.8 414 chr3R 15891665 intron CG14877 - chr3R 15891872 intron CG14877 - chr3R 15892079 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-233 801 chr3R 16021219 16021229 chr3R 16021283 16021308 4 73 2.0 4.5 3.2 1.0 89 chr3R 16021219 intergenic not near genes chr3R 16021264 intergenic not near genes chr3R 16021308 intergenic not near genes chr3R_4_16020001 chr3R_16020001 RAL-233 802 chr3R 16023861 16023891 chr3R 16023938 16023968 4 76 0.0 1.0 0.5 2.7 107 chr3R 16023861 intergenic not near genes chr3R 16023914 intergenic not near genes chr3R 16023968 intergenic not near genes chr3R_4_16020001 chr3R_16020001 RAL-233 803 chr3R 16246524 16246543 chr3R 16246600 16246618 4 76 0.5 0.0 0.2 3.3 94 chr3R 16246524 intron tara + chr3R 16246571 intron tara + chr3R 16246618 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-233 804 chr3R 16472585 16472594 chr3R 16472660 16472667 4 74 8.0 9.0 8.5 0.4 82 chr3R 16472585 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472667 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-233 805 chr3R 16582907 16582917 chr3R 16582986 16582995 4 78 5.5 6.0 5.8 0.6 88 chr3R 16582907 intron Scp2 - chr3R 16582951 intron Scp2 - chr3R 16582995 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-233 806 chr3R 16594757 16594779 chr3R 16594835 16594841 7 76 4.5 1.5 3.0 1.8 84 chr3R 16594757 5` UTR CG14892 + chr3R 16594799 5` UTR CG14892 + chr3R 16594841 5` UTR CG14892 + chr3R_7_16590001 chr3R_16590001 RAL-233 807 chr3R 16756317 16756342 chr3R 16762508 16762532 diver 8 6191 2.0 1.5 1.8 2.9 6215 chr3R 16756317 intron bxd - chr3R 16759424 intron bxd - chr3R 16762532 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-233 808 chr3R 16774204 16774231 chr3R 16774310 16774326 5 103 0.5 3.0 1.8 1.8 122 chr3R 16774204 intergenic not near genes chr3R 16774265 intergenic not near genes chr3R 16774326 intergenic not near genes chr3R_5_16770001 chr3R_16770001 RAL-233 809 chr3R 16849715 16849743 chr3R 16849818 16849846 9 101 1.5 1.5 1.5 3.6 131 chr3R 16849715 intron iab-8 - chr3R 16849780 intron iab-8 - chr3R 16849846 intron iab-8 - chr3R_9_16845001 chr3R_16845001 RAL-233 810 chr3R 17194412 17194423 chr3R 17194491 17194501 6 79 3.0 1.0 2.0 2.0 89 chr3R 17194412 intron Mur89F - chr3R 17194456 intron Mur89F - chr3R 17194501 intron Mur89F - chr3R_6_17190001 chr3R_17190001 RAL-233 811 chr3R 17294678 17294699 chr3R 17295106 17295127 BS 4 427 1.0 3.5 2.2 1.2 449 chr3R 17294678 intergenic not near genes chr3R 17294902 intergenic not near genes chr3R 17295127 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-233 812 chr3R 17346693 17346714 chr3R 17348256 17348277 F-element 4 1563 0.5 1.5 1.0 2.0 1584 chr3R 17346693 intron beat-IIa - chr3R 17347485 intron beat-IIa - chr3R 17348277 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-233 813 chr3R 17467504 17467521 chr3R 17467589 17467606 4 85 3.0 6.5 4.8 0.7 102 chr3R 17467504 intergenic not near genes chr3R 17467555 intergenic not near genes chr3R 17467606 intergenic not near genes chr3R_4_17465001 chr3R_17465001 RAL-233 814 chr3R 17591286 17591325 chr3R 17591722 17591750 F-element 5 430 2.0 0.5 1.2 2.3 464 chr3R 17591286 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591750 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-233 815 chr3R 17925858 17925886 chr3R 17927318 17927353 hobo 11 1463 2.5 6.5 4.5 2.0 1495 chr3R 17925858 intron cpo + chr3R 17926606 intron cpo + chr3R 17927353 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-233 816 chr3R 18041759 18041768 chr3R 18041836 18041845 4 77 0.0 0.0 0.0 4.0 86 chr3R 18041759 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041845 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-233 817 chr3R 18226540 18226570 chr3R 18226623 18226656 12 79 6.0 2.0 4.0 2.4 116 chr3R 18226540 exon Mdh2 + chr3R 18226598 intron Mdh2 + chr3R 18226656 intron Mdh2 + chr3R_12_18225001 chr3R_18225001 RAL-233 818 chr3R 18622780 18622800 chr3R 18622855 18622857 5 72 3.0 0.5 1.8 1.8 77 chr3R 18622780 intron qin + chr3R 18622818 intron qin + chr3R 18622857 intron qin + chr3R_5_18620001 chr3R_18620001 RAL-233 819 chr3R 18670391 18670407 chr3R 18670483 18670500 4 93 1.0 1.5 1.2 1.8 109 chr3R 18670391 intron CG7702 + chr3R 18670446 intron CG7702 + chr3R 18670500 intron CG7702 + chr3R_4_18670001 chr3R_18670001 RAL-233 820 chr3R 18766782 18766802 chr3R 18766859 18766880 9 76 0.5 3.5 2.0 3.0 98 chr3R 18766782 intron CG7720 - chr3R 18766831 intron CG7720 - chr3R 18766880 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-233 821 chr3R 18781710 18781727 chr3R 18781769 18781801 4 70 2.0 2.0 2.0 1.3 91 chr3R 18781710 intron CG7720 - chr3R 18781756 intron CG7720 - chr3R 18781801 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-233 822 chr3R 18791496 18791519 chr3R 18791575 18791598 7 78 1.5 1.5 1.5 2.8 102 chr3R 18791496 intron CG7720 - chr3R 18791547 intron CG7720 - chr3R 18791598 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-233 823 chr3R 19079576 19079603 chr3R 19079655 19079673 4 75 3.0 2.5 2.8 1.1 97 chr3R 19079576 intron cdi - chr3R 19079624 intron cdi - chr3R 19079673 intron cdi - chr3R_4_19075001 chr3R_19075001 RAL-233 824 chr3R 19109224 19109245 chr3R 19109334 19109356 6 111 1.5 3.0 2.2 1.9 132 chr3R 19109224 intron CG6040 + chr3R 19109290 intron CG6040 + chr3R 19109356 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-233 825 chr3R 19193010 19193014 chr3R 19197304 19197318 F-element 4 4302 1.5 3.5 2.5 1.1 4308 chr3R 19193010 intron CG31475 + chr3R 19195164 intron CG31475 + chr3R 19197318 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-233 826 chr3R 19340400 19340424 chr3R 19340477 19340501 5 77 1.5 0.5 1.0 2.5 101 chr3R 19340400 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340501 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-233 827 chr3R 19702327 19702347 chr3R 19702406 19702429 5 81 3.5 1.5 2.5 1.4 102 chr3R 19702327 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702429 intergenic not near genes chr3R_5_19700001 chr3R_19700001 RAL-233 828 chr3R 19716216 19716248 chr3R 19716293 19716325 5 77 0.5 0.0 0.2 4.2 109 chr3R 19716216 intergenic CG34286 - chr3R 19716270 intergenic CG34286 - chr3R 19716325 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-233 829 chr3R 19859972 19859995 chr3R 19860053 19860076 6 80 2.0 0.5 1.2 2.7 104 chr3R 19859972 intron Ire1 - chr3R 19860024 intron Ire1 - chr3R 19860076 intron Ire1 - chr3R_6_19860001 chr3R_19860001 RAL-233 830 chr3R 19908274 19908299 chr3R 19908357 19908383 4 84 0.0 2.5 1.2 1.8 109 chr3R 19908274 intron RhoGAP92B + chr3R 19908328 intron RhoGAP92B + chr3R 19908383 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-233 831 chr3R 19953948 19953979 chr3R 19954025 19954055 13 75 2.5 1.5 2.0 4.3 107 chr3R 19953948 intron Hs6st - chr3R 19954002 intron Hs6st - chr3R 19954055 intron Hs6st - chr3R_13_19950001 chr3R_19950001 RAL-233 832 chr3R 20008824 20008848 chr3R 20008903 20008916 4 77 1.0 0.5 0.8 2.2 92 chr3R 20008824 intergenic MED25 +,Hs6st - chr3R 20008870 intergenic MED25 +,Hs6st - chr3R 20008916 intergenic MED25 +,Hs6st - chr3R_4_20005001 chr3R_20005001 RAL-233 833 chr3R 20060650 20060657 chr3R 20060714 20060740 5 78 3.5 1.5 2.5 1.4 90 chr3R 20060650 intergenic not near genes chr3R 20060695 intergenic not near genes chr3R 20060740 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-233 834 chr3R 20077052 20077068 chr3R 20077138 20077154 5 86 2.0 1.5 1.8 1.8 102 chr3R 20077052 intergenic not near genes chr3R 20077103 intergenic not near genes chr3R 20077154 intergenic not near genes chr3R_5_20075001 chr3R_20075001 RAL-233 835 chr3R 20106480 20106490 chr3R 20107060 20107070 4 580 0.5 1.5 1.0 2.0 590 chr3R 20106480 intergenic CG31206 - chr3R 20106775 intergenic CG31206 - chr3R 20107070 3` UTR CG31206 - chr3R_4_20105001 chr3R_20105001 RAL-233 836 chr3R 20154054 20154072 chr3R 20154169 20154188 4 116 3.0 1.0 2.0 1.3 134 chr3R 20154054 intergenic not near genes chr3R 20154121 intergenic not near genes chr3R 20154188 intergenic not near genes chr3R_4_20150001 chr3R_20150001 RAL-233 837 chr3R 20156707 20156721 chr3R 20165862 20165891 roo 6 9165 1.5 1.5 1.5 2.4 9184 chr3R 20156707 intergenic not near genes chr3R 20161299 intergenic not near genes chr3R 20165891 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-233 838 chr3R 20191902 20191915 chr3R 20191980 20191986 7 77 5.0 2.0 3.5 1.6 84 chr3R 20191902 intergenic not near genes chr3R 20191944 intergenic not near genes chr3R 20191986 intergenic not near genes chr3R_7_20190001 chr3R_20190001 RAL-233 839 chr3R 20282278 20282297 chr3R 20282354 20282373 4 76 0.0 2.0 1.0 2.0 95 chr3R 20282278 intron cic + chr3R 20282326 intron cic + chr3R 20282373 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-233 840 chr3R 20286150 20286184 chr3R 20286257 20286291 12 106 0.5 0.0 0.2 10.0 141 chr3R 20286150 intron cic + chr3R 20286220 intron cic + chr3R 20286291 intron cic + chr3R_12_20285001 chr3R_20285001 RAL-233 841 chr3R 20312857 20312878 chr3R 20312943 20312964 4 86 2.0 1.0 1.5 1.6 107 chr3R 20312857 intron CG42668 + chr3R 20312910 intron CG42668 + chr3R 20312964 intron CG42668 + chr3R_4_20310001 chr3R_20310001 RAL-233 842 chr3R 20748117 20748136 chr3R 20748197 20748216 4 80 0.0 2.0 1.0 2.0 99 chr3R 20748117 intron CG42322 + chr3R 20748166 intron CG42322 + chr3R 20748216 intron,3` UTR CG42322 +,Prosalpha4T1 - chr3R_4_20745001 chr3R_20745001 RAL-233 843 chr3R 20787450 20787458 chr3R 20787540 20787549 5 91 2.5 2.5 2.5 1.4 99 chr3R 20787450 intron Syp + chr3R 20787500 intron Syp + chr3R 20787549 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-233 844 chr3R 20870251 20870284 chr3R 20870336 20870367 13 84 2.0 1.5 1.8 4.6 116 chr3R 20870251 intergenic not near genes chr3R 20870309 intergenic not near genes chr3R 20870367 intergenic not near genes chr3R_13_20870001 chr3R_20870001 RAL-233 845 chr3R 20901663 20901683 chr3R 20901766 20901776 6 101 1.0 1.5 1.2 2.7 113 chr3R 20901663 intergenic CG5621 + chr3R 20901720 intergenic CG5621 + chr3R 20901776 intergenic CG5621 + chr3R_6_20900001 chr3R_20900001 RAL-233 846 chr3R 20942809 20942843 chr3R 20942885 20942914 11 75 0.0 0.5 0.2 9.2 105 chr3R 20942809 intron CG31191 - chr3R 20942862 intron CG31191 - chr3R 20942914 intron CG31191 - chr3R_11_20940001 chr3R_20940001 RAL-233 847 chr3R 20989426 20989450 chr3R 20989515 20989539 6 87 3.0 4.5 3.8 1.2 113 chr3R 20989426 intron Calx + chr3R 20989482 intron Calx + chr3R 20989539 intron Calx + chr3R_6_20985001 chr3R_20985001 RAL-233 848 chr3R 20994950 20994984 chr3R 20995036 20995043 11 75 1.0 4.0 2.5 3.1 93 chr3R 20994950 intron Calx + chr3R 20994996 intron Calx + chr3R 20995043 intron Calx + chr3R_11_20995001 chr3R_20995001 RAL-233 849 chr3R 21007611 21007641 chr3R 21007691 21007721 8 80 2.0 2.0 2.0 2.7 110 chr3R 21007611 intron Calx + chr3R 21007666 intron Calx + chr3R 21007721 intron Calx + chr3R_8_21005001 chr3R_21005001 RAL-233 850 chr3R 21014013 21014045 chr3R 21014091 21014123 8 78 0.5 2.5 1.5 3.2 110 chr3R 21014013 3` UTR Calx + chr3R 21014068 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_8_21010001 chr3R_21010001 RAL-233 851 chr3R 21048378 21048408 chr3R 21051420 21051449 5 3041 24.0 7.5 15.8 0.3 3071 chr3R 21048378 exon CG7079 - chr3R 21049914 intergenic CG17279 - chr3R 21051449 3` UTR Mvl - chr3R_5_21045001 chr3R_21045001 RAL-233 852 chr3R 21141672 21141705 chr3R 21150153 21150171 Tirant 5 8470 2.5 3.5 3.0 1.2 8499 chr3R 21141672 intron SNF4Agamma + chr3R 21145922 intron SNF4Agamma + chr3R 21150171 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-233 853 chr3R 21240447 21240476 chr3R 21240539 21240568 7 91 0.0 2.5 1.2 3.2 121 chr3R 21240447 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240568 intergenic not near genes chr3R_7_21240001 chr3R_21240001 RAL-233 854 chr3R 21472019 21472031 chr3R 21472099 21472112 5 81 2.5 1.5 2.0 1.7 93 chr3R 21472019 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-233 855 chr3R 21662186 21662212 chr3R 21662318 21662344 6 132 3.0 2.0 2.5 1.7 158 chr3R 21662186 exon CG6353 - chr3R 21662265 intron CG6353 - chr3R 21662344 intron CG6353 - chr3R_6_21660001 chr3R_21660001 RAL-233 856 chr3R 21761119 21761149 chr3R 21768510 21768526 mdg1 7 7386 1.0 1.5 1.2 3.2 7407 chr3R 21761119 exon CG42335 + chr3R 21764822 intron CG42335 + chr3R 21768526 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-233 857 chr3R 8339246 8339247 chr3R 21907534 21907534 5 13568288 14.0 15.5 14.8 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-233 858 chr3R 21907534 21907534 chr3R 28831799 28831802 20 6924268 18.5 15.0 16.8 1.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-233 859 chr3R 9620956 9620956 chr3R 21907535 21907535 4 12286579 6.5 16.0 11.2 0.3 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-233 860 chr3R 21907535 21907535 chr3R 28831801 28831804 27 6924266 18.5 14.5 16.5 1.5 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-233 861 chr3R 21907536 21907536 chr3R 28831801 28831803 32 6924266 19.0 14.5 16.8 1.8 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_32_25365001 chr3R_25365001 RAL-233 862 chr3R 22234684 22234712 chr3R 22236003 22236031 pogo 6 1318 3.0 2.0 2.5 1.7 1347 chr3R 22234684 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236031 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-233 863 chr3R 22272349 22272369 chr3R 22272431 22272451 4 82 2.5 1.5 2.0 1.3 102 chr3R 22272349 intron SKIP + chr3R 22272400 intron SKIP + chr3R 22272451 intron SKIP + chr3R_4_22270001 chr3R_22270001 RAL-233 864 chr3R 22450547 22450579 chr3R 22453187 22453188 NOF 11 2637 0.5 2.5 1.5 4.4 2641 chr3R 22450547 intron CG34376 + chr3R 22451868 intron CG34376 + chr3R 22453188 intron CG34376 + chr3R_11_22450001 chr3R_22450001 RAL-233 865 chr3R 22533837 22533866 chr3R 22533914 22533946 5 78 1.0 1.0 1.0 2.5 109 chr3R 22533837 intron CG5326 - chr3R 22533892 intron CG5326 - chr3R 22533946 intron CG5326 - chr3R_5_22530001 chr3R_22530001 RAL-233 866 chr3R 22538455 22538468 chr3R 22538536 22538549 4 83 1.5 4.0 2.8 1.1 94 chr3R 22538455 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538549 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-233 867 chr3R 22673709 22673730 chr3R 22673804 22673825 4 95 1.0 0.5 0.8 2.2 116 chr3R 22673709 intron wake + chr3R 22673767 intron wake + chr3R 22673825 intron wake + chr3R_4_22670001 chr3R_22670001 RAL-233 868 chr3R 22867456 22867462 chr3R 22867574 22867591 5 128 3.5 4.0 3.8 1.0 135 chr3R 22867456 intergenic not near genes chr3R 22867524 intergenic not near genes chr3R 22867591 intergenic not near genes chr3R_5_22865001 chr3R_22865001 RAL-233 869 chr3R 22919160 22919176 chr3R 22919257 22919271 8 96 3.0 6.0 4.5 1.5 111 chr3R 22919160 intron klg + chr3R 22919216 intron klg + chr3R 22919271 intron klg + chr3R_8_22915001 chr3R_22915001 RAL-233 870 chr3R 22927877 22927904 chr3R 22927972 22927999 11 91 3.0 5.0 4.0 2.2 122 chr3R 22927877 intron klg + chr3R 22927938 intron klg + chr3R 22927999 intron klg + chr3R_11_22925001 chr3R_22925001 RAL-233 871 chr3R 22944358 22944394 chr3R 22944464 22944472 11 96 0.5 3.0 1.8 3.9 114 chr3R 22944358 intron klg + chr3R 22944415 intron klg + chr3R 22944472 intron klg + chr3R_11_22940001 chr3R_22940001 RAL-233 872 chr3R 23064172 23064205 chr3R 23064281 23064314 16 106 4.0 5.0 4.5 2.9 142 chr3R 23064172 exon CG17111 - chr3R 23064243 intron CG17111 - chr3R 23064314 exon CG17111 - chr3R_16_23060001 chr3R_23060001 RAL-233 873 chr3R 23073654 23073689 chr3R 23073743 23073778 9 87 2.5 1.0 1.8 3.2 124 chr3R 23073654 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-233 874 chr3R 23145168 23145194 chr3R 23145245 23145271 4 76 4.5 1.0 2.8 1.1 103 chr3R 23145168 intergenic not near genes chr3R 23145220 intergenic not near genes chr3R 23145271 intergenic not near genes chr3R_4_23145001 chr3R_23145001 RAL-233 875 chr3R 23305254 23305266 chr3R 23305595 23305614 4 346 1.5 1.0 1.2 1.8 360 chr3R 23305254 intron pnt - chr3R 23305434 intron pnt - chr3R 23305614 intron pnt - chr3R_4_23305001 chr3R_23305001 RAL-233 876 chr3R 23335434 23335449 chr3R 23335512 23335527 4 78 1.5 2.0 1.8 1.4 93 chr3R 23335434 intron pnt - chr3R 23335480 intron pnt - chr3R 23335527 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-233 877 chr3R 23360204 23360214 chr3R 23360280 23360290 4 76 0.0 4.5 2.2 1.2 86 chr3R 23360204 3` UTR RpS3 + chr3R 23360247 intergenic RpS3 + chr3R 23360290 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-233 878 chr3R 23421976 23422010 chr3R 23422061 23422089 6 83 1.0 3.0 2.0 2.0 113 chr3R 23421976 intron CG4374 - chr3R 23422032 intron CG4374 - chr3R 23422089 intron CG4374 - chr3R_6_23420001 chr3R_23420001 RAL-233 879 chr3R 23543307 23543333 chr3R 23543383 23543404 4 75 1.5 0.0 0.8 2.2 97 chr3R 23543307 intergenic not near genes chr3R 23543356 intergenic not near genes chr3R 23543404 intergenic not near genes chr3R_4_23540001 chr3R_23540001 RAL-233 880 chr3R 23549155 23549182 chr3R 23549259 23549287 9 103 2.5 3.0 2.8 2.4 132 chr3R 23549155 intergenic not near genes chr3R 23549221 intergenic not near genes chr3R 23549287 intergenic not near genes chr3R_9_23545001 chr3R_23545001 RAL-233 881 chr3R 23558404 23558423 chr3R 23560185 23560204 Bari1 5 1781 2.0 2.5 2.2 1.6 1800 chr3R 23558404 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560204 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-233 882 chr3R 23582798 23582827 chr3R 23582883 23582911 6 85 2.0 0.5 1.2 2.7 113 chr3R 23582798 intergenic not near genes chr3R 23582854 intergenic not near genes chr3R 23582911 intergenic not near genes chr3R_6_23580001 chr3R_23580001 RAL-233 883 chr3R 23684713 23684726 chr3R 23685184 23685211 roo 6 475 3.0 9.5 6.2 0.8 498 chr3R 23684713 intron CG18754 + chr3R 23684962 intron CG18754 + chr3R 23685211 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-233 884 chr3R 23808482 23808502 chr3R 23808600 23808627 10 119 2.0 2.0 2.0 3.3 145 chr3R 23808482 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808554 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808627 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_10_23805001 chr3R_23805001 RAL-233 885 chr3R 23944911 23944935 chr3R 23944996 23945020 11 85 1.5 3.0 2.2 3.4 109 chr3R 23944911 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_11_23940001 chr3R_23940001 RAL-233 886 chr3R 24025575 24025604 chr3R 24025654 24025664 6 68 2.5 2.5 2.5 1.7 89 chr3R 24025575 intron KrT95D - chr3R 24025620 intron KrT95D - chr3R 24025664 intron KrT95D - chr3R_6_24025001 chr3R_24025001 RAL-233 887 chr3R 24072084 24072111 chr3R 24072522 24072542 jockey 10 436 5.5 3.5 4.5 1.8 458 chr3R 24072084 intron 4EHP - chr3R 24072313 intron 4EHP - chr3R 24072542 intron 4EHP - chr3R_10_24070001 chr3R_24070001 RAL-233 888 chr3R 24076917 24076943 chr3R 24078384 24078410 hobo 4 1467 3.0 1.0 2.0 1.3 1493 chr3R 24076917 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078410 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-233 889 chr3R 24236464 24236495 chr3R 24236540 24236571 12 75 6.0 0.0 3.0 3.0 107 chr3R 24236464 exon mask + chr3R 24236518 intron mask + chr3R 24236571 intron mask + chr3R_12_24235001 chr3R_24235001 RAL-233 890 chr3R 24327555 24327586 chr3R 24329006 24329036 12 1453 37.0 33.5 35.2 0.3 1481 chr3R 24327555 exon BRWD3 + chr3R 24328296 3` UTR BRWD3 + chr3R 24329036 exon CG5728 - chr3R_12_24325001 chr3R_24325001 RAL-233 891 chr3R 21907534 21907535 chr3R 24389465 24389465 5 2481931 18.5 7.0 12.8 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-233 892 chr3R 24426291 24426305 chr3R 24426548 24426562 5 256 0.0 2.0 1.0 2.5 271 chr3R 24426291 intron nAChRalpha1 - chr3R 24426426 intron nAChRalpha1 - chr3R 24426562 intron nAChRalpha1 - chr3R_5_24425001 chr3R_24425001 RAL-233 893 chr3R 24441623 24441646 chr3R 24441904 24441923 6 280 1.5 1.5 1.5 2.4 300 chr3R 24441623 intron nAChRalpha1 - chr3R 24441773 intron nAChRalpha1 - chr3R 24441923 intron nAChRalpha1 - chr3R_6_24440001 chr3R_24440001 RAL-233 894 chr3R 24448436 24448453 chr3R 24448532 24448543 4 95 5.0 2.0 3.5 0.9 107 chr3R 24448436 intron nAChRalpha1 - chr3R 24448490 intron nAChRalpha1 - chr3R 24448543 intron nAChRalpha1 - chr3R_4_24445001 chr3R_24445001 RAL-233 895 chr3R 24614880 24614910 chr3R 24614960 24614990 8 80 1.5 0.5 1.0 4.0 110 chr3R 24614880 intron mld + chr3R 24614935 intron mld + chr3R 24614990 intron mld + chr3R_8_24610001 chr3R_24610001 RAL-233 896 chr3R 24624376 24624392 chr3R 24624465 24624481 4 89 1.5 1.0 1.2 1.8 105 chr3R 24624376 intron Syx18 - chr3R 24624428 intron Syx18 - chr3R 24624481 exon Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-233 897 chr3R 24842101 24842132 chr3R 24842187 24842217 9 86 1.5 2.0 1.8 3.2 116 chr3R 24842101 5` UTR Esp + chr3R 24842159 5` UTR Esp + chr3R 24842217 5` UTR Esp + chr3R_9_24840001 chr3R_24840001 RAL-233 898 chr3R 24927137 24927154 chr3R 24931928 24931945 Doc 7 4790 2.5 2.5 2.5 2.0 4808 chr3R 24927137 intergenic Trf4-2 + chr3R 24929541 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_7_24925001 chr3R_24925001 RAL-233 899 chr3R 24974917 24974935 chr3R 24974996 24975014 7 78 2.0 3.0 2.5 2.0 97 chr3R 24974917 intergenic not near genes chr3R 24974966 intergenic not near genes chr3R 24975014 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-233 900 chr3R 25004901 25004921 chr3R 25004984 25005004 6 83 0.0 4.0 2.0 2.0 103 chr3R 25004901 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-233 901 chr3R 25436494 25436515 chr3R 25436588 25436590 4 84 0.0 2.0 1.0 2.0 96 chr3R 25436494 intron Fur1 - chr3R 25436542 intron Fur1 - chr3R 25436590 intron Fur1 - chr3R_4_25435001 chr3R_25435001 RAL-233 902 chr3R 25464491 25464524 chr3R 25464808 25464839 5 317 2.0 2.0 2.0 1.7 348 chr3R 25464491 intron Fur1 - chr3R 25464665 intron Fur1 - chr3R 25464839 intron Fur1 - chr3R_5_25460001 chr3R_25460001 RAL-233 903 chr3R 25689130 25689151 chr3R 25689238 25689251 6 106 2.5 4.0 3.2 1.4 121 chr3R 25689130 intergenic not near genes chr3R 25689190 intergenic not near genes chr3R 25689251 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-233 904 chr3R 25782913 25782933 chr3R 25782981 25783010 9 75 1.5 3.5 2.5 2.6 97 chr3R 25782913 intergenic not near genes chr3R 25782962 intergenic not near genes chr3R 25783010 intergenic not near genes chr3R_9_25780001 chr3R_25780001 RAL-233 905 chr3R 25797923 25797941 chr3R 25799679 25799697 6 1756 8.0 9.0 8.5 0.6 1774 chr3R 25797923 intergenic CR43847 - chr3R 25798810 intergenic not near genes chr3R 25799697 intergenic not near genes chr3R_6_25795001 chr3R_25795001 RAL-233 906 chr3R 25797126 25797144 chr3R 25799842 25799861 4 2719 15.5 18.5 17.0 0.2 2735 chr3R 25797126 intron CR43847 - chr3R 25798494 intergenic not near genes chr3R 25799861 intergenic not near genes chr3R_4_25795001 chr3R_25795001 RAL-233 907 chr3R 25814048 25814072 chr3R 25814130 25814150 4 81 1.5 3.0 2.2 1.2 102 chr3R 25814048 intergenic not near genes chr3R 25814099 intergenic not near genes chr3R 25814150 intergenic not near genes chr3R_4_25810001 chr3R_25810001 RAL-233 908 chr3R 25832693 25832719 chr3R 25841874 25841901 roo 12 9181 3.0 7.0 5.0 2.0 9208 chr3R 25832693 exon alpha4GT2 + chr3R 25837297 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-233 909 chr3R 25905906 25905929 chr3R 25906101 25906123 4 194 2.0 3.0 2.5 1.1 217 chr3R 25905906 intron CR43259 - chr3R 25906014 intron CR43259 - chr3R 25906123 3` UTR CR43259 - chr3R_4_25905001 chr3R_25905001 RAL-233 910 chr3R 26060404 26060434 chr3R 26060490 26060520 5 86 3.5 2.5 3.0 1.2 116 chr3R 26060404 intron CG14544 + chr3R 26060462 intron CG14544 + chr3R 26060520 intron CG14544 + chr3R_5_26060001 chr3R_26060001 RAL-233 911 chr3R 26108829 26108858 chr3R 26117411 26117418 Tirant 4 8574 2.0 0.0 1.0 2.0 8589 chr3R 26108829 5` UTR CG31324 + chr3R 26113124 intron CG31324 + chr3R 26117418 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-233 912 chr3R 26334571 26334598 chr3R 26334696 26334718 12 124 2.5 2.0 2.2 3.8 147 chr3R 26334571 intron CG33970 + chr3R 26334644 intron CG33970 + chr3R 26334718 intron CG33970 + chr3R_12_26330001 chr3R_26330001 RAL-233 913 chr3R 26376337 26376348 chr3R 26385497 26385508 roo 5 9160 3.0 3.0 3.0 1.2 9171 chr3R 26376337 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385508 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-233 914 chr3R 26456662 26456675 chr3R 26456719 26456753 4 67 1.5 2.0 1.8 1.4 91 chr3R 26456662 intergenic CG14237 + chr3R 26456708 intergenic CG14237 + chr3R 26456753 intergenic CG14237 + chr3R_4_26455001 chr3R_26455001 RAL-233 915 chr3R 26558346 26558360 chr3R 26565658 26565672 Stalker4 4 7311 2.0 4.5 3.2 1.0 7326 chr3R 26558346 intron scrib + chr3R 26562009 intron scrib + chr3R 26565672 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-233 916 chr3R 26575018 26575038 chr3R 26575084 26575117 5 76 2.0 0.5 1.2 2.3 99 chr3R 26575018 exon scrib + chr3R 26575068 intron scrib + chr3R 26575117 intron scrib + chr3R_5_26575001 chr3R_26575001 RAL-233 917 chr3R 26642750 26642759 chr3R 26643144 26643153 jockey 4 394 1.0 1.5 1.2 1.8 403 chr3R 26642750 intergenic not near genes chr3R 26642952 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-233 918 chr3R 26660646 26660678 chr3R 26660730 26660762 11 81 3.0 9.0 6.0 1.6 116 chr3R 26660646 intron beat-VII - chr3R 26660704 intron beat-VII - chr3R 26660762 intron beat-VII - chr3R_11_26660001 chr3R_26660001 RAL-233 919 chr3R 26703276 26703285 chr3R 26703373 26703382 5 97 4.0 0.0 2.0 1.7 106 chr3R 26703276 intron amon - chr3R 26703329 intron amon - chr3R 26703382 intron amon - chr3R_5_26700001 chr3R_26700001 RAL-233 920 chr3R 26740310 26740319 chr3R 26740385 26740394 5 75 0.0 1.5 0.8 2.8 84 chr3R 26740310 intergenic not near genes chr3R 26740352 intergenic not near genes chr3R 26740394 intergenic not near genes chr3R_5_26740001 chr3R_26740001 RAL-233 921 chr3R 26770241 26770248 chr3R 26770318 26770325 4 77 1.0 0.5 0.8 2.2 84 chr3R 26770241 intergenic CR45563 + chr3R 26770283 intergenic CR45563 + chr3R 26770325 intergenic CR45563 + chr3R_4_26770001 chr3R_26770001 RAL-233 922 chr3R 26804807 26804834 chr3R 26805038 26805065 5 223 2.0 2.5 2.2 1.6 258 chr3R 26804807 intron Tl + chr3R 26804936 intron Tl + chr3R 26805065 intron Tl + chr3R_5_26800001 chr3R_26800001 RAL-233 923 chr3R 26960731 26960765 chr3R 26960820 26960854 12 88 3.5 1.0 2.2 3.8 123 chr3R 26960731 intergenic Tsp97E - chr3R 26960792 intergenic Tsp97E - chr3R 26960854 intergenic Tsp97E - chr3R_12_26960001 chr3R_26960001 RAL-233 924 chr3R 27140530 27140548 chr3R 27148140 27148157 412 7 7609 2.0 6.0 4.0 1.4 7627 chr3R 27140530 intron CG6051 - chr3R 27144344 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_7_27140001 chr3R_27140001 RAL-233 925 chr3R 27323259 27323281 chr3R 27324001 27324023 4 742 2.0 1.5 1.8 1.4 764 chr3R 27323259 intergenic not near genes chr3R 27323641 intergenic not near genes chr3R 27324023 intergenic not near genes chr3R_4_27320001 chr3R_27320001 RAL-233 926 chr3R 27513434 27513438 chr3R 27513513 27513518 4 79 1.5 0.5 1.0 2.0 84 chr3R 27513434 intergenic not near genes chr3R 27513476 intergenic not near genes chr3R 27513518 intergenic not near genes chr3R_4_27510001 chr3R_27510001 RAL-233 927 chr3R 27595052 27595080 chr3R 27595135 27595163 9 82 0.5 2.0 1.2 4.1 111 chr3R 27595052 intron CG5639 - chr3R 27595108 intron CG5639 - chr3R 27595163 intron CG5639 - chr3R_9_27595001 chr3R_27595001 RAL-233 928 chr3R 27779273 27779287 chr3R 27779351 27779367 6 78 4.0 10.0 7.0 0.8 94 chr3R 27779273 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779367 intron CG34353 - chr3R_6_27775001 chr3R_27775001 RAL-233 929 chr3R 27813820 27813839 chr3R 27813924 27813943 4 104 4.5 0.0 2.2 1.2 123 chr3R 27813820 intron CG34353 - chr3R 27813882 intron CG34353 - chr3R 27813943 intron CG34353 - chr3R_4_27810001 chr3R_27810001 RAL-233 930 chr3R 27856767 27856780 chr3R 27858250 27858263 hopper2 4 1483 2.0 1.5 1.8 1.4 1496 chr3R 27856767 intron CG34353 - chr3R 27857515 intron CG34353 - chr3R 27858263 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-233 931 chr3R 28054450 28054471 chr3R 28054518 28054547 6 73 3.0 1.0 2.0 2.0 97 chr3R 28054450 intron CG34362 + chr3R 28054498 intron CG34362 + chr3R 28054547 intron CG34362 + chr3R_6_28050001 chr3R_28050001 RAL-233 932 chr3R 28068495 28068520 chr3R 28073933 28073962 I-element 5 5440 1.0 1.5 1.2 2.3 5467 chr3R 28068495 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073962 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-233 933 chr3R 28103329 28103336 chr3R 28103422 28103422 4 90 4.5 4.5 4.5 0.7 93 chr3R 28103329 intergenic not near genes chr3R 28103376 intergenic not near genes chr3R 28103422 intergenic not near genes chr3R_4_28100001 chr3R_28100001 RAL-233 934 chr3R 28103339 28103356 chr3R 28103415 28103449 9 88 3.0 3.0 3.0 2.2 110 chr3R 28103339 intergenic not near genes chr3R 28103394 intergenic not near genes chr3R 28103449 intergenic not near genes chr3R_9_28100001 chr3R_28100001 RAL-233 935 chr3R 28118862 28118882 chr3R 28118943 28118963 7 80 2.5 4.5 3.5 1.6 101 chr3R 28118862 intergenic not near genes chr3R 28118912 intergenic not near genes chr3R 28118963 intergenic not near genes chr3R_7_28115001 chr3R_28115001 RAL-233 936 chr3R 28172969 28172994 chr3R 28173119 28173151 6 150 0.5 0.5 0.5 4.0 182 chr3R 28172969 intron CG34354 + chr3R 28173060 intron CG34354 + chr3R 28173151 intron CG34354 + chr3R_6_28170001 chr3R_28170001 RAL-233 937 chr3R 28253344 28253370 chr3R 28255854 28255880 jockey 4 2510 2.0 4.0 3.0 1.0 2536 chr3R 28253344 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255880 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-233 938 chr3R 28283000 28283015 chr3R 28283629 28283644 4 629 0.0 6.0 3.0 1.0 644 chr3R 28283000 exon CG34436 + chr3R 28283322 exon CG34436 + chr3R 28283644 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-233 939 chr3R 28393710 28393725 chr3R 28393810 28393825 5 100 1.0 0.5 0.8 2.8 115 chr3R 28393710 intergenic not near genes chr3R 28393768 intergenic not near genes chr3R 28393825 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-233 940 chr3R 28445615 28445640 chr3R 28445695 28445729 7 83 1.0 3.0 2.0 2.3 114 chr3R 28445615 intron beat-VI + chr3R 28445672 intron beat-VI + chr3R 28445729 intron beat-VI + chr3R_7_28445001 chr3R_28445001 RAL-233 941 chr3R 28455028 28455056 chr3R 28455292 28455314 11 263 3.0 1.0 2.0 3.7 286 chr3R 28455028 intron beat-VI + chr3R 28455171 intron beat-VI + chr3R 28455314 intron beat-VI + chr3R_11_28455001 chr3R_28455001 RAL-233 942 chr3R 28484353 28484374 chr3R 28486271 28486292 35 1918 20.5 50.5 35.5 1.0 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_35_28485001 chr3R_28485001 RAL-233 943 chr3R 28594102 28594127 chr3R 28594181 28594206 4 79 2.0 2.0 2.0 1.3 104 chr3R 28594102 5` UTR CR43440 + chr3R 28594154 5` UTR CR43440 + chr3R 28594206 5` UTR CR43440 + chr3R_4_28590001 chr3R_28590001 RAL-233 944 chr3R 28633192 28633221 chr3R 28633272 28633301 10 80 2.0 3.0 2.5 2.9 109 chr3R 28633192 intron CG10011 - chr3R 28633246 intron CG10011 - chr3R 28633301 intron CG10011 - chr3R_10_28630001 chr3R_28630001 RAL-233 945 chr3R 28688200 28688224 chr3R 28688345 28688374 6 151 1.5 3.0 2.2 1.9 174 chr3R 28688200 intron CG9990 + chr3R 28688287 intron CG9990 + chr3R 28688374 intron CG9990 + chr3R_6_28685001 chr3R_28685001 RAL-233 946 chr3R 28702929 28702964 chr3R 28703013 28703048 11 83 2.0 5.0 3.5 2.4 119 chr3R 28702929 intron htt + chr3R 28702988 intron htt + chr3R 28703048 intron htt + chr3R_11_28700001 chr3R_28700001 RAL-233 947 chr3R 28732725 28732739 chr3R 28732826 28732840 4 101 2.5 3.5 3.0 1.0 115 chr3R 28732725 intron htt + chr3R 28732782 intron htt + chr3R 28732840 intron htt + chr3R_4_28730001 chr3R_28730001 RAL-233 948 chr3R 28742500 28742515 chr3R 28742576 28742591 5 76 0.5 1.5 1.0 2.5 91 chr3R 28742500 intron AstA-R2 - chr3R 28742546 intron AstA-R2 - chr3R 28742591 intron AstA-R2 - chr3R_5_28740001 chr3R_28740001 RAL-233 949 chr3R 28792894 28792901 chr3R 28797988 28797996 jockey 4 5095 1.0 2.5 1.8 1.4 5102 chr3R 28792894 intergenic not near genes chr3R 28795445 intergenic not near genes chr3R 28797996 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-233 950 chr3R 28823128 28823142 chr3R 28823186 28823219 6 73 4.0 5.5 4.8 1.0 91 chr3R 28823128 exon CG1647 + chr3R 28823174 exon CG1647 + chr3R 28823219 exon CG1647 + chr3R_6_28820001 chr3R_28820001 RAL-233 951 chr3R 21907534 21907536 chr3R 28831799 28831801 26 6924266 19.0 15.0 17.0 1.4 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-233 952 chr3R 21907534 21907534 chr3R 28831802 28831804 26 6924267 18.5 15.0 16.8 1.5 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-233 953 chr3R 28999002 28999016 chr3R 28999087 28999106 4 90 1.5 0.0 0.8 2.2 104 chr3R 28999002 intron wat - chr3R 28999054 intron wat - chr3R 28999106 intron wat - chr3R_4_28995001 chr3R_28995001 RAL-233 954 chr3R 29152534 29152566 chr3R 29152634 29152658 4 92 6.0 4.5 5.2 0.6 124 chr3R 29152534 exon Slbp - chr3R 29152596 exon Slbp - chr3R 29152658 exon Slbp - chr3R_4_29150001 chr3R_29150001 RAL-233 955 chr3R 29237246 29237283 chr3R 29239266 29239304 8 2020 6.5 6.5 6.5 1.1 2058 chr3R 29237246 exon CG11951 - chr3R 29238275 intron CG11951 - chr3R 29239304 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-233 956 chr3R 29239224 29239248 chr3R 29245515 29245539 9 6291 6.5 19.5 13.0 0.6 6315 chr3R 29239224 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_9_29240001 chr3R_29240001 RAL-233 957 chr3R 29319828 29319858 chr3R 29320147 29320165 jockey 5 316 1.5 1.0 1.2 2.3 337 chr3R 29319828 intergenic Cnx99A - chr3R 29319996 intergenic Cnx99A - chr3R 29320165 intergenic not near genes chr3R_5_29315001 chr3R_29315001 RAL-233 958 chr3R 29389485 29389514 chr3R 29389561 29389593 7 73 2.5 2.5 2.5 2.0 108 chr3R 29389485 intron Ptp99A + chr3R 29389539 intron Ptp99A + chr3R 29389593 intron Ptp99A + chr3R_7_29385001 chr3R_29385001 RAL-233 959 chr3R 29406630 29406649 chr3R 29407899 29407929 jockey 6 1278 2.0 4.0 3.0 1.5 1299 chr3R 29406630 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-233 960 chr3R 29447823 29447850 chr3R 29447926 29447957 7 105 2.5 0.5 1.5 2.8 134 chr3R 29447823 intron Ptp99A + chr3R 29447890 intron Ptp99A + chr3R 29447957 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-233 961 chr3R 29472008 29472036 chr3R 29472101 29472103 5 88 1.5 1.0 1.2 2.3 95 chr3R 29472008 intron Ptp99A + chr3R 29472056 intron Ptp99A + chr3R 29472103 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-233 962 chr3R 29526234 29526262 chr3R 29526320 29526349 5 87 1.5 1.5 1.5 2.0 115 chr3R 29526234 intergenic not near genes chr3R 29526292 intergenic not near genes chr3R 29526349 intergenic not near genes chr3R_5_29525001 chr3R_29525001 RAL-233 963 chr3R 29538064 29538179 chr3R 29538139 29538231 6 74 0.0 0.0 0.0 6.0 167 chr3R 29538064 intergenic not near genes chr3R 29538148 intergenic not near genes chr3R 29538231 intergenic not near genes chr3R_6_29535001 chr3R_29535001 RAL-233 964 chr3R 29550261 29550289 chr3R 29550342 29550343 6 75 1.0 3.0 2.0 2.0 82 chr3R 29550261 intergenic not near genes chr3R 29550302 intergenic not near genes chr3R 29550343 intergenic not near genes chr3R_6_29550001 chr3R_29550001 RAL-233 965 chr3R 29586058 29586081 chr3R 29586257 29586264 6 196 2.5 1.0 1.8 2.1 206 chr3R 29586058 intergenic not near genes chr3R 29586161 intergenic not near genes chr3R 29586264 intergenic not near genes chr3R_6_29585001 chr3R_29585001 RAL-233 966 chr3R 29757231 29757263 chr3R 29757311 29757343 8 79 1.0 0.0 0.5 5.3 112 chr3R 29757231 intron CR44953 - chr3R 29757287 intron CR44953 - chr3R 29757343 intron CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-233 967 chr3R 29758942 29758971 chr3R 29759018 29759049 8 76 2.5 1.5 2.0 2.7 107 chr3R 29758942 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-233 968 chr3R 29854835 29854860 chr3R 29854915 29854939 6 79 1.5 4.0 2.8 1.6 104 chr3R 29854835 3` UTR dgt1 - chr3R 29854887 exon dgt1 - chr3R 29854939 exon dgt1 - chr3R_6_29850001 chr3R_29850001 RAL-233 969 chr3R 29882024 29882052 chr3R 29891181 29891209 roo 4 9156 1.0 0.5 0.8 2.2 9185 chr3R 29882024 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-233 970 chr3R 29963479 29963508 chr3R 29963581 29963597 5 99 0.5 3.0 1.8 1.8 118 chr3R 29963479 intron TkR99D - chr3R 29963538 intron TkR99D - chr3R 29963597 intron TkR99D - chr3R_5_29960001 chr3R_29960001 RAL-233 971 chr3R 30268245 30268448 chr3R 30268324 30268526 14 77 3.0 2.0 2.5 4.0 281 chr3R 30268245 intergenic not near genes chr3R 30268386 intergenic not near genes chr3R 30268526 intergenic not near genes chr3R_14_30265001 chr3R_30265001 RAL-233 972 chr3R 30354733 30354757 chr3R 30354818 30354841 6 84 3.0 1.5 2.2 1.9 108 chr3R 30354733 intron hdc + chr3R 30354787 intron hdc + chr3R 30354841 intron hdc + chr3R_6_30350001 chr3R_30350001 RAL-233 973 chr3R 30396217 30396244 chr3R 30404483 30404510 roo 5 8264 1.0 1.5 1.2 2.3 8293 chr3R 30396217 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-233 974 chr3R 30452157 30452184 chr3R 30452274 30452304 9 114 3.5 2.5 3.0 2.2 147 chr3R 30452157 intron aralar1 - chr3R 30452230 intron aralar1 - chr3R 30452304 intron aralar1 - chr3R_9_30450001 chr3R_30450001 RAL-233 975 chr3R 30480483 30480506 chr3R 30482950 30482974 jockey 5 2466 3.0 3.0 3.0 1.2 2491 chr3R 30480483 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482974 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-233 976 chr3R 30627603 30627637 chr3R 30627683 30627717 15 77 0.5 2.5 1.5 6.0 114 chr3R 30627603 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627717 exon CG2267 - chr3R_15_30625001 chr3R_30625001 RAL-233 977 chr3R 30679524 30679552 chr3R 30686993 30686995 blood 7 7465 2.0 3.5 2.8 1.8 7471 chr3R 30679524 intergenic not near genes chr3R 30683260 intergenic not near genes chr3R 30686995 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-233 978 chr3R 30854644 30854651 chr3R 30854716 30854735 5 82 2.0 2.5 2.2 1.6 91 chr3R 30854644 intergenic tll + chr3R 30854690 intergenic tll + chr3R 30854735 intergenic tll + chr3R_5_30850001 chr3R_30850001 RAL-233 979 chr3R 30931558 30931574 chr3R 30931639 30931651 4 79 2.0 0.0 1.0 2.0 93 chr3R 30931558 intergenic not near genes chr3R 30931604 intergenic not near genes chr3R 30931651 intergenic not near genes chr3R_4_30930001 chr3R_30930001 RAL-233 980 chr3R 31087670 31087697 chr3R 31087856 31087885 5 187 2.0 0.5 1.2 2.3 215 chr3R 31087670 intergenic not near genes chr3R 31087778 intergenic not near genes chr3R 31087885 intergenic not near genes chr3R_5_31085001 chr3R_31085001 RAL-233 981 chr3R 31279372 31279409 chr3R 31285563 31285600 diver 7 6188 1.5 1.5 1.5 2.8 6228 chr3R 31279372 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285600 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-233 982 chr3R 31413091 31413121 chr3R 31418291 31418321 copia 11 5199 3.5 0.5 2.0 3.7 5230 chr3R 31413091 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-233 983 chr3R 31426884 31426910 chr3R 31426976 31427002 6 92 1.0 1.5 1.2 2.7 118 chr3R 31426884 intron Gprk2 + chr3R 31426943 intron Gprk2 + chr3R 31427002 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-233 984 chr3R 31442269 31442297 chr3R 31442354 31442382 5 84 2.0 2.5 2.2 1.6 113 chr3R 31442269 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442382 intron Gprk2 + chr3R_5_31440001 chr3R_31440001 RAL-233 985 chr3R 31539345 31539357 chr3R 31539430 31539442 4 84 1.0 2.0 1.5 1.6 97 chr3R 31539345 intergenic not near genes chr3R 31539394 intergenic not near genes chr3R 31539442 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-233 986 chr3R 31691541 31691562 chr3R 31696307 31696328 Doc 8 4764 5.0 7.5 6.2 1.1 4787 chr3R 31691541 intergenic not near genes chr3R 31693934 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-233 987 chr3R 31911875 31911903 chr3R 31912115 31912142 7 239 0.5 2.5 1.5 2.8 267 chr3R 31911875 intron heph - chr3R 31912008 intron heph - chr3R 31912142 intron heph - chr3R_7_31910001 chr3R_31910001 RAL-233 988 chr3R 31946023 31946051 chr3R 31946112 31946136 8 86 1.5 1.5 1.5 3.2 113 chr3R 31946023 intron heph - chr3R 31946080 intron heph - chr3R 31946136 intron heph - chr3R_8_31945001 chr3R_31945001 RAL-233 989 chr3R 31975038 31975057 chr3R 31975129 31975147 4 91 3.0 1.5 2.2 1.2 109 chr3R 31975038 intron heph - chr3R 31975092 intron heph - chr3R 31975147 intron heph - chr3R_4_31975001 chr3R_31975001 RAL-233 990 chr3R 31997993 31998020 chr3R 32005463 32005479 blood 7 7468 2.5 2.5 2.5 2.0 7486 chr3R 31997993 intron heph - chr3R 32001736 intron heph - chr3R 32005479 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-233 991 chr4 671604 671626 chr4 680187 680209 Tirant 4 8582 2.0 2.5 2.2 1.2 8605 chr4 671604 intron CG11360 + chr4 675906 intron CG11360 + chr4 680209 intron CG11360 + chr4_4_675001 chr4_675001 RAL-233 992 chrX 367047 367070 chrX 367144 367167 6 97 0.0 1.0 0.5 4.0 120 chrX 367047 intron,5` UTR CG32816 -,yar + chrX 367107 intron CG32816 - chrX 367167 intron CG32816 - chrX_6_365001 chrX_365001 RAL-233 993 chrX 440995 441022 chrX 441073 441099 12 77 1.5 1.5 1.5 4.8 104 chrX 440995 intron CG32816 - chrX 441047 intron CG32816 - chrX 441099 intron CG32816 - chrX_12_440001 chrX_440001 RAL-233 994 chrX 443493 443524 chrX 443575 443604 7 81 2.0 1.5 1.8 2.5 111 chrX 443493 intron CG32816 - chrX 443548 intron CG32816 - chrX 443604 intron CG32816 - chrX_7_440001 chrX_440001 RAL-233 995 chrX 450374 450393 chrX 450452 450471 6 78 1.0 0.5 0.8 3.3 97 chrX 450374 intron CG32816 - chrX 450422 intron CG32816 - chrX 450471 intron CG32816 - chrX_6_450001 chrX_450001 RAL-233 996 chrX 551427 551448 chrX 558989 559009 412 5 7561 4.5 2.0 3.2 1.2 7582 chrX 551427 intron Appl + chrX 555218 intron Appl + chrX 559009 intron Appl + chrX_5_555001 chrX_555001 RAL-233 997 chrX 569355 569376 chrX 569457 569491 9 112 2.0 3.5 2.8 2.4 136 chrX 569355 intron Appl + chrX 569423 intron Appl + chrX 569491 intron Appl + chrX_9_565001 chrX_565001 RAL-233 998 chrX 611144 611165 chrX 611234 611248 5 88 1.5 4.0 2.8 1.3 104 chrX 611144 intron CG13366 - chrX 611196 intron CG13366 - chrX 611248 intron CG13366 - chrX_5_610001 chrX_610001 RAL-233 999 chrX 695292 695318 chrX 695369 695370 6 67 4.0 1.5 2.8 1.6 78 chrX 695292 intron sdk + chrX 695331 intron sdk + chrX 695370 intron sdk + chrX_6_695001 chrX_695001 RAL-233 1000 chrX 706807 706826 chrX 707171 707190 7 364 0.0 3.5 1.8 2.5 383 chrX 706807 intron sdk + chrX 706998 intron sdk + chrX 707190 intron sdk + chrX_7_705001 chrX_705001 RAL-233 1001 chrX 778127 778160 chrX 778216 778248 7 90 1.5 1.0 1.2 3.2 121 chrX 778127 intron fz3 + chrX 778188 intron fz3 + chrX 778248 intron fz3 + chrX_7_775001 chrX_775001 RAL-233 1002 chrX 806786 806815 chrX 806882 806891 6 92 3.0 3.0 3.0 1.5 105 chrX 806786 intron Sec22 + chrX 806838 intron Sec22 + chrX 806891 intron Sec22 + chrX_6_805001 chrX_805001 RAL-233 1003 chrX 918396 918406 chrX 918463 918490 7 77 4.0 6.0 5.0 1.2 94 chrX 918396 intron CG43867 - chrX 918443 intron CG43867 - chrX 918490 intron CG43867 - chrX_7_915001 chrX_915001 RAL-233 1004 chrX 1308117 1308151 chrX 1308201 1308235 7 84 1.5 2.0 1.8 2.5 118 chrX 1308117 intron DAAM - chrX 1308176 intron DAAM - chrX 1308235 intron DAAM - chrX_7_1305001 chrX_1305001 RAL-233 1005 chrX 1494727 1494752 chrX 1494852 1494877 6 124 3.5 4.0 3.8 1.2 150 chrX 1494727 intron,intron inc +,Nmdar2 - chrX 1494802 intron,intron inc +,Nmdar2 - chrX 1494877 intron,intron inc +,Nmdar2 - chrX_6_1490001 chrX_1490001 RAL-233 1006 chrX 1518040 1518063 chrX 1523442 1523465 jockey 7 5400 3.0 2.0 2.5 2.0 5425 chrX 1518040 intergenic inc + chrX 1520752 intergenic not near genes chrX 1523465 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-233 1007 chrX 1622944 1622956 chrX 1624136 1624157 4 1198 8.5 11.5 10.0 0.4 1213 chrX 1622944 intron,intron Mur2B -,br + chrX 1623550 intron,intron Mur2B -,br + chrX 1624157 intron,5` UTR Mur2B -,br + chrX_4_1620001 chrX_1620001 RAL-233 1008 chrX 1624666 1624685 chrX 1635830 1635850 gtwin 10 11168 21.0 19.5 20.2 0.5 11184 chrX 1624666 intron,exon Mur2B -,br + chrX 1630258 intron,intron Mur2B -,br + chrX 1635850 intron,exon Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-233 1009 chrX 1627977 1628003 chrX 1635445 1635470 gtwin 8 7468 1.5 7.0 4.2 1.5 7493 chrX 1627977 intron,intron Mur2B -,br + chrX 1631724 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_8_1630001 chrX_1630001 RAL-233 1010 chrX 1635972 1636000 chrX 1636095 1636125 6 124 16.5 17.5 17.0 0.3 153 chrX 1635972 intron,exon Mur2B -,br + chrX 1636048 intron,intron Mur2B -,br + chrX 1636125 intron,exon Mur2B -,br + chrX_6_1635001 chrX_1635001 RAL-233 1011 chrX 1636862 1637104 chrX 1637001 1637298 18 172 25.5 19.0 22.2 0.8 436 chrX 1636862 intron,exon Mur2B -,br + chrX 1637080 intron,exon Mur2B -,br + chrX 1637298 intron,exon Mur2B -,br + chrX_18_1635001 chrX_1635001 RAL-233 1012 chrX 1637284 1637310 chrX 1643069 1643095 7 5777 11.0 22.0 16.5 0.4 5811 chrX 1637284 intron,exon Mur2B -,br + chrX 1640190 intron,intron Mur2B -,br + chrX 1643095 intron,exon Mur2B -,br + chrX_7_1640001 chrX_1640001 RAL-233 1013 chrX 2385737 2385759 chrX 2385816 2385838 4 79 2.5 1.5 2.0 1.3 101 chrX 2385737 intron PsGEF - chrX 2385788 intron PsGEF - chrX 2385838 intron PsGEF - chrX_4_2385001 chrX_2385001 RAL-233 1014 chrX 2399837 2399863 chrX 2408190 2408214 roo 12 8347 3.0 1.5 2.2 3.8 8377 chrX 2399837 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408214 intergenic not near genes chrX_12_2400001 chrX_2400001 RAL-233 1015 chrX 2578820 2578843 chrX 2578923 2578947 6 102 2.5 1.0 1.8 2.1 127 chrX 2578820 intergenic Pdfr +,Vha36-3 - chrX 2578884 intergenic Vha36-3 -,Pdfr + chrX 2578947 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-233 1016 chrX 2888113 2888147 chrX 2888191 2888225 10 78 2.5 3.0 2.8 2.6 112 chrX 2888113 intron kirre + chrX 2888169 intron kirre + chrX 2888225 intron kirre + chrX_10_2885001 chrX_2885001 RAL-233 1017 chrX 2932232 2932242 chrX 2932314 2932325 5 83 5.0 2.0 3.5 1.1 93 chrX 2932232 intron,exon kirre +,CG32793 + chrX 2932278 intron,exon kirre +,CG32793 + chrX 2932325 intron,exon kirre +,CG32793 + chrX_5_2930001 chrX_2930001 RAL-233 1018 chrX 3136888 3136902 chrX 3137363 3137377 5 476 20.0 6.0 13.0 0.4 489 chrX 3136888 intron N + chrX 3137132 intron N + chrX 3137377 intron N + chrX_5_3135001 chrX_3135001 RAL-233 1019 chrX 3203465 3203490 chrX 3203664 3203689 6 199 1.5 1.5 1.5 2.4 224 chrX 3203465 intron dnc + chrX 3203577 intron dnc + chrX 3203689 intron dnc + chrX_6_3200001 chrX_3200001 RAL-233 1020 chrX 3293196 3293224 chrX 3293362 3293382 5 164 1.0 2.0 1.5 2.0 186 chrX 3293196 intron dnc + chrX 3293289 intron dnc + chrX 3293382 intron dnc + chrX_5_3290001 chrX_3290001 RAL-233 1021 chrX 3408989 3409018 chrX 3409065 3409095 7 75 0.0 2.0 1.0 3.5 106 chrX 3408989 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409095 intron,intron CR44999 +,CG12535 - chrX_7_3405001 chrX_3405001 RAL-233 1022 chrX 3415041 3415051 chrX 3421219 3421236 3S18 4 6183 0.5 0.5 0.5 2.7 6195 chrX 3415041 intron,intron CR44999 +,CG12535 - chrX 3418138 intron,intron CR44999 +,CG12535 - chrX 3421236 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-233 1023 chrX 3543777 3543792 chrX 3543841 3543866 6 76 1.0 0.5 0.8 3.3 89 chrX 3543777 intron CG32791 - chrX 3543822 intron CG32791 - chrX 3543866 intron CG32791 - chrX_6_3540001 chrX_3540001 RAL-233 1024 chrX 3597565 3597583 chrX 3619721 3619751 roo 7 22166 1.5 2.5 2.0 2.3 22186 chrX 3597565 intron AstA-R1 + chrX 3608658 intron AstA-R1 + chrX 3619751 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-233 1025 chrX 3630545 3630574 chrX 3630619 3630650 4 74 1.5 1.5 1.5 1.6 105 chrX 3630545 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630650 intron AstA-R1 + chrX_4_3630001 chrX_3630001 RAL-233 1026 chrX 3657413 3657437 chrX 3657493 3657517 7 80 1.0 1.0 1.0 3.5 104 chrX 3657413 intron AstA-R1 + chrX 3657465 intron AstA-R1 + chrX 3657517 intron AstA-R1 + chrX_7_3655001 chrX_3655001 RAL-233 1027 chrX 3866120 3866129 chrX 3866197 3866207 5 76 0.0 1.0 0.5 3.3 87 chrX 3866120 intron yin - chrX 3866164 intron yin - chrX 3866207 intron yin - chrX_5_3865001 chrX_3865001 RAL-233 1028 chrX 3881270 3881304 chrX 3881409 3881442 8 139 3.0 1.5 2.2 2.5 172 chrX 3881270 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-233 1029 chrX 3986863 3986895 chrX 3994496 3994528 412 5 7633 2.0 0.5 1.2 2.3 7665 chrX 3986863 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994528 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-233 1030 chrX 4157908 4157921 chrX 4164961 4164974 297 4 7053 1.0 1.5 1.2 1.8 7066 chrX 4157908 intron Fas2 - chrX 4161441 intron Fas2 - chrX 4164974 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-233 1031 chrX 4700407 4700428 chrX 4700750 4700769 jockey 5 343 1.0 0.5 0.8 2.8 362 chrX 4700407 3` UTR ctp + chrX 4700588 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-233 1032 chrX 4744803 4744816 chrX 4744888 4744889 4 82 2.0 1.0 1.5 1.6 86 chrX 4744803 intergenic not near genes chrX 4744846 intergenic not near genes chrX 4744889 intergenic not near genes chrX_4_4740001 chrX_4740001 RAL-233 1033 chrX 4827998 4828002 chrX 4835347 4835355 Stalker4 5 7360 2.5 3.5 3.0 1.2 7357 chrX 4827998 intergenic not near genes chrX 4831676 intergenic not near genes chrX 4835355 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-233 1034 chrX 5134795 5134828 chrX 5134896 5134929 9 101 1.5 1.0 1.2 4.1 134 chrX 5134795 intron,intron CG15465 +,rg + chrX 5134862 intron,intron CG15465 +,rg + chrX 5134929 intron,intron CG15465 +,rg + chrX_9_5130001 chrX_5130001 RAL-233 1035 chrX 5431793 5431800 chrX 5431874 5431882 4 82 13.0 4.5 8.8 0.4 89 chrX 5431793 exon CG15784 + chrX 5431838 exon CG15784 + chrX 5431882 exon CG15784 + chrX_4_5430001 chrX_5430001 RAL-233 1036 chrX 5501501 5501511 chrX 5501591 5501601 4 89 0.5 0.0 0.2 3.3 100 chrX 5501501 5` UTR CG4151 + chrX 5501551 5` UTR CG4151 + chrX 5501601 5` UTR CG4151 + chrX_4_5500001 chrX_5500001 RAL-233 1037 chrX 5798865 5798885 chrX 5799027 5799045 8 161 0.5 1.5 1.0 4.0 180 chrX 5798865 intergenic not near genes chrX 5798955 intergenic not near genes chrX 5799045 intergenic not near genes chrX_8_5795001 chrX_5795001 RAL-233 1038 chrX 5966811 5966829 chrX 5966880 5966911 4 75 2.5 1.5 2.0 1.3 100 chrX 5966811 intron Grip + chrX 5966861 intron Grip + chrX 5966911 intron Grip + chrX_4_5965001 chrX_5965001 RAL-233 1039 chrX 6215346 6215372 chrX 6215429 6215454 5 83 1.5 2.0 1.8 1.8 108 chrX 6215346 intergenic not near genes chrX 6215400 intergenic not near genes chrX 6215454 intergenic not near genes chrX_5_6215001 chrX_6215001 RAL-233 1040 chrX 6312190 6312211 chrX 6312273 6312288 4 82 1.0 0.0 0.5 2.7 98 chrX 6312190 intron CG15894 + chrX 6312239 intron CG15894 + chrX 6312288 intron CG15894 + chrX_4_6310001 chrX_6310001 RAL-233 1041 chrX 6315173 6315189 chrX 6315303 6315319 7 129 2.0 1.0 1.5 2.8 146 chrX 6315173 intron CG15894 + chrX 6315246 intron CG15894 + chrX 6315319 intron CG15894 + chrX_7_6315001 chrX_6315001 RAL-233 1042 chrX 6335227 6335242 chrX 6337737 6337751 Tirant 4 2510 0.0 5.0 2.5 1.1 2524 chrX 6335227 intergenic not near genes chrX 6336489 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-233 1043 chrX 6562821 6562830 chrX 6571301 6571303 Tirant 5 8479 8.5 6.5 7.5 0.6 8482 chrX 6562821 intron CG34417 + chrX 6567062 intron CG34417 + chrX 6571303 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-233 1044 chrX 6562840 6562851 chrX 6571299 6571330 Tirant 9 8477 5.0 6.5 5.8 1.3 8490 chrX 6562840 intron CG34417 + chrX 6567085 intron CG34417 + chrX 6571330 intron CG34417 + chrX_9_6565001 chrX_6565001 RAL-233 1045 chrX 6897696 6897705 chrX 6897806 6897815 5 110 0.5 2.5 1.5 2.0 119 chrX 6897696 intergenic not near genes chrX 6897756 intergenic not near genes chrX 6897815 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-233 1046 chrX 7125249 7125265 chrX 7134405 7134424 roo 4 9158 1.5 1.5 1.5 1.6 9175 chrX 7125249 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134424 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-233 1047 chrX 7702904 7702930 chrX 7703343 7703369 jockey 5 438 1.5 0.5 1.0 2.5 465 chrX 7702904 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-233 1048 chrX 7737172 7737187 chrX 7737254 7737266 4 81 0.0 2.5 1.2 1.8 94 chrX 7737172 intron Tom40 + chrX 7737219 intron Tom40 + chrX 7737266 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-233 1049 chrX 7832432 7832451 chrX 7832521 7832540 4 89 0.0 2.0 1.0 2.0 108 chrX 7832432 intron CG1402 + chrX 7832486 intron CG1402 + chrX 7832540 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-233 1050 chrX 8585387 8585427 chrX 8585515 8585555 14 126 0.5 2.5 1.5 5.6 168 chrX 8585387 intron CG12065 + chrX 8585471 intron CG12065 + chrX 8585555 intron CG12065 + chrX_14_8585001 chrX_8585001 RAL-233 1051 chrX 8835087 8835106 chrX 8835179 8835198 4 91 1.0 1.0 1.0 2.0 111 chrX 8835087 intergenic CR45537 + chrX 8835142 intergenic CR45537 + chrX 8835198 intergenic CR45537 + chrX_4_8835001 chrX_8835001 RAL-233 1052 chrX 8894101 8894111 chrX 8894202 8894211 4 100 0.5 0.5 0.5 2.7 110 chrX 8894101 intron Moe - chrX 8894156 intron Moe - chrX 8894211 intron Moe - chrX_4_8890001 chrX_8890001 RAL-233 1053 chrX 8922329 8922343 chrX 8922759 8922777 jockey 5 433 3.5 1.0 2.2 1.6 448 chrX 8922329 intron rdgA + chrX 8922553 intron rdgA + chrX 8922777 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-233 1054 chrX 8948774 8948783 chrX 8956284 8956293 roo 4 7510 1.0 0.5 0.8 2.2 7519 chrX 8948774 intron rdgA + chrX 8952534 intron rdgA + chrX 8956293 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-233 1055 chrX 9337940 9337973 chrX 9338032 9338063 9 92 0.5 1.5 1.0 4.5 123 chrX 9337940 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338063 exon CG34449 - chrX_9_9335001 chrX_9335001 RAL-233 1056 chrX 9439646 9439651 chrX 9439871 9439876 4 225 2.0 1.5 1.8 1.4 230 chrX 9439646 intron mgl - chrX 9439761 intron mgl - chrX 9439876 intron mgl - chrX_4_9435001 chrX_9435001 RAL-233 1057 chrX 9575798 9575821 chrX 9576114 9576143 mdg3 11 321 4.0 1.5 2.8 2.9 345 chrX 9575798 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576143 intron,5` UTR CG32699 -,CG42395 - chrX_11_9575001 chrX_9575001 RAL-233 1058 chrX 10138218 10138240 chrX 10145722 10145744 412 6 7504 1.5 2.0 1.8 2.1 7526 chrX 10138218 intron,intron RhoU +,CR44894 - chrX 10141981 intron,intron RhoU +,CR44894 - chrX 10145744 intron,intron RhoU +,CR44894 - chrX_6_10140001 chrX_10140001 RAL-233 1059 chrX 10550338 10550365 chrX 10550412 10550443 9 77 0.0 1.0 0.5 6.0 105 chrX 10550338 intron spri - chrX 10550390 intron spri - chrX 10550443 intron spri - chrX_9_10550001 chrX_10550001 RAL-233 1060 chrX 10550851 10550887 chrX 10552317 10552354 hobo 9 1464 2.0 1.5 1.8 3.2 1503 chrX 10550851 intron spri - chrX 10551602 intron spri - chrX 10552354 intron spri - chrX_9_10550001 chrX_10550001 RAL-233 1061 chrX 11214992 11215011 chrX 11215355 11215374 5 363 1.0 3.5 2.2 1.6 382 chrX 11214992 intergenic not near genes chrX 11215183 intergenic not near genes chrX 11215374 intergenic not near genes chrX_5_11215001 chrX_11215001 RAL-233 1062 chrX 11268582 11268595 chrX 11270057 11270084 hopper2 6 1489 1.5 4.0 2.8 1.6 1502 chrX 11268582 intron CG44422 - chrX 11269333 intron CG44422 - chrX 11270084 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-233 1063 chrX 11279156 11279173 chrX 11279239 11279258 4 84 1.5 1.0 1.2 1.8 102 chrX 11279156 intron CG44422 - chrX 11279207 intron CG44422 - chrX 11279258 intron CG44422 - chrX_4_11275001 chrX_11275001 RAL-233 1064 chrX 11378909 11378939 chrX 11379158 11379188 6 246 1.5 1.5 1.5 2.4 279 chrX 11378909 intron dlg1 + chrX 11379048 intron dlg1 + chrX 11379188 intron dlg1 + chrX_6_11375001 chrX_11375001 RAL-233 1065 chrX 11379766 11379779 chrX 11379911 11379924 4 145 1.0 1.5 1.2 1.8 158 chrX 11379766 intron dlg1 + chrX 11379845 intron dlg1 + chrX 11379924 intron dlg1 + chrX_4_11375001 chrX_11375001 RAL-233 1066 chrX 11764800 11764810 chrX 11765071 11765081 4 271 0.5 1.0 0.8 2.2 281 chrX 11764800 intron m + chrX 11764940 intron m + chrX 11765081 intron m + chrX_4_11760001 chrX_11760001 RAL-233 1067 chrX 11834919 11834948 chrX 11838937 11838942 4 4003 23.5 9.5 16.5 0.2 4023 chrX 11834919 exon rudhira + chrX 11836930 3` UTR rudhira + chrX 11838942 intergenic not near genes chrX_4_11835001 chrX_11835001 RAL-233 1068 chrX 11922380 11922383 chrX 11922513 11922516 5 133 1.5 2.5 2.0 1.7 136 chrX 11922380 intron Sclp - chrX 11922448 intron Sclp - chrX 11922516 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-233 1069 chrX 13442141 13442171 chrX 13442232 13442234 6 86 0.5 1.5 1.0 3.0 93 chrX 13442141 intergenic not near genes chrX 13442188 intergenic not near genes chrX 13442234 intergenic not near genes chrX_6_13440001 chrX_13440001 RAL-233 1070 chrX 13843369 13843403 chrX 13843443 13843480 5 76 1.5 0.0 0.8 2.8 111 chrX 13843369 intron AMPdeam - chrX 13843424 intron AMPdeam - chrX 13843480 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-233 1071 chrX 13943287 13943299 chrX 13943378 13943390 8 91 0.0 4.5 2.2 2.5 103 chrX 13943287 intron mamo - chrX 13943338 intron mamo - chrX 13943390 intron mamo - chrX_8_13940001 chrX_13940001 RAL-233 1072 chrX 14105025 14105052 chrX 14114171 14114199 roo 7 9147 3.5 3.0 3.2 1.7 9174 chrX 14105025 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114199 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-233 1073 chrX 14628186 14628210 chrX 14628277 14628290 5 88 0.5 2.0 1.2 2.3 104 chrX 14628186 intron NetA - chrX 14628238 intron NetA - chrX 14628290 intron NetA - chrX_5_14625001 chrX_14625001 RAL-233 1074 chrX 14636477 14636490 chrX 14641898 14641915 I-element 4 5432 1.5 1.0 1.2 1.8 5438 chrX 14636477 intron NetA - chrX 14639196 intron NetA - chrX 14641915 intron NetA - chrX_4_14635001 chrX_14635001 RAL-233 1075 chrX 14674728 14674742 chrX 14674804 14674817 4 76 1.0 2.5 1.8 1.4 89 chrX 14674728 intergenic not near genes chrX 14674772 intergenic not near genes chrX 14674817 intergenic not near genes chrX_4_14670001 chrX_14670001 RAL-233 1076 chrX 14704149 14704173 chrX 14704322 14704346 4 172 0.0 1.5 0.8 2.2 197 chrX 14704149 intron NetB - chrX 14704248 intron NetB - chrX 14704346 intron NetB - chrX_4_14700001 chrX_14700001 RAL-233 1077 chrX 14737417 14737442 chrX 14737674 14737695 6 256 1.5 3.0 2.2 1.9 278 chrX 14737417 intron NetB - chrX 14737556 intron NetB - chrX 14737695 intron NetB - chrX_6_14735001 chrX_14735001 RAL-233 1078 chrX 14767961 14767975 chrX 14768041 14768055 4 80 1.0 0.0 0.5 2.7 94 chrX 14767961 intergenic not near genes chrX 14768008 intergenic not near genes chrX 14768055 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-233 1079 chrX 14818770 14818794 chrX 14823971 14823987 copia 4 5200 0.5 1.0 0.8 2.2 5217 chrX 14818770 intron rut - chrX 14821378 intron rut - chrX 14823987 intron rut - chrX_4_14820001 chrX_14820001 RAL-233 1080 chrX 15248264 15248296 chrX 15248340 15248372 7 75 0.5 1.0 0.8 3.9 108 chrX 15248264 intergenic not near genes chrX 15248318 intergenic not near genes chrX 15248372 intergenic not near genes chrX_7_15245001 chrX_15245001 RAL-233 1081 chrX 15273708 15273721 chrX 15274870 15274879 1360 4 1163 7.0 5.5 6.2 0.6 1171 chrX 15273708 intergenic not near genes chrX 15274294 intergenic not near genes chrX 15274879 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-233 1082 chrX 15277635 15277669 chrX 15277720 15277754 7 84 0.5 0.0 0.2 5.8 119 chrX 15277635 intergenic not near genes chrX 15277694 intergenic not near genes chrX 15277754 intergenic not near genes chrX_7_15275001 chrX_15275001 RAL-233 1083 chrX 15336896 15336904 chrX 15341124 15341136 7 4228 28.0 26.5 27.2 0.2 4240 chrX 15336896 exon HDAC6 + chrX 15339016 intron HDAC6 + chrX 15341136 exon CG9123 - chrX_7_15335001 chrX_15335001 RAL-233 1084 chrX 15413061 15413088 chrX 15417352 15417390 Juan 6 4294 3.0 0.0 1.5 2.4 4329 chrX 15413061 intron Cngl - chrX 15415226 intron Cngl - chrX 15417390 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-233 1085 chrX 15444845 15444863 chrX 15445042 15445064 11 196 35.5 31.5 33.5 0.3 219 chrX 15444845 intergenic not near genes chrX 15444954 intergenic not near genes chrX 15445064 intergenic not near genes chrX_11_15440001 chrX_15440001 RAL-233 1086 chrX 15678046 15678068 chrX 15678123 15678145 12 76 3.0 2.0 2.5 3.4 99 chrX 15678046 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_12_15675001 chrX_15675001 RAL-233 1087 chrX 15940823 15940846 chrX 15940907 15940930 4 84 1.0 0.0 0.5 2.7 107 chrX 15940823 intergenic CG8924 +,Stim - chrX 15940876 intergenic CG8924 +,Stim - chrX 15940930 intergenic CG8924 +,Stim - chrX_4_15940001 chrX_15940001 RAL-233 1088 chrX 16329434 16329443 chrX 16329517 16329525 5 83 0.0 5.0 2.5 1.4 91 chrX 16329434 intron CG9919 - chrX 16329480 intron CG9919 - chrX 16329525 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-233 1089 chrX 16529427 16529441 chrX 16529538 16529552 6 111 0.0 2.0 1.0 3.0 125 chrX 16529427 intron para - chrX 16529490 intron para - chrX 16529552 intron para - chrX_6_16525001 chrX_16525001 RAL-233 1090 chrX 16936014 16936041 chrX 16936432 16936435 jockey 4 412 0.5 0.5 0.5 2.7 421 chrX 16936014 intron CG4928 + chrX 16936224 intron CG4928 + chrX 16936435 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-233 1091 chrX 17054173 17054200 chrX 17054380 17054407 4 207 0.5 0.5 0.5 2.7 234 chrX 17054173 intron CG45002 - chrX 17054290 intron CG45002 - chrX 17054407 intron CG45002 - chrX_4_17050001 chrX_17050001 RAL-233 1092 chrX 17122646 17122671 chrX 17122736 17122762 8 90 1.5 2.0 1.8 2.9 116 chrX 17122646 intron CG5004 + chrX 17122704 intron CG5004 + chrX 17122762 intron CG5004 + chrX_8_17120001 chrX_17120001 RAL-233 1093 chrX 17476475 17476489 chrX 17476535 17476566 8 63 0.0 2.0 1.0 4.0 91 chrX 17476475 intron CG43658 - chrX 17476520 intron CG43658 - chrX 17476566 intron CG43658 - chrX_8_17475001 chrX_17475001 RAL-233 1094 chrX 17556944 17556976 chrX 17557443 17557443 mdg1 6 489 2.0 3.5 2.8 1.6 499 chrX 17556944 intron CG43658 - chrX 17557194 intron CG43658 - chrX 17557443 intron CG43658 - chrX_6_17555001 chrX_17555001 RAL-233 1095 chrX 17613728 17613748 chrX 17613853 17613873 4 124 1.0 2.0 1.5 1.6 145 chrX 17613728 intergenic not near genes chrX 17613800 intergenic not near genes chrX 17613873 intergenic not near genes chrX_4_17610001 chrX_17610001 RAL-233 1096 chrX 17837381 17837387 chrX 17837437 17837446 5 62 4.0 4.0 4.0 1.0 65 chrX 17837381 intron CG6398 + chrX 17837414 intron CG6398 + chrX 17837446 intron CG6398 + chrX_5_17835001 chrX_17835001 RAL-233 1097 chrX 17958710 17958725 chrX 17959458 17959473 4 748 13.5 3.0 8.2 0.4 763 chrX 17958710 intron Sh - chrX 17959092 intron Sh - chrX 17959473 intron Sh - chrX_4_17955001 chrX_17955001 RAL-233 1098 chrX 18453497 18453502 chrX 18453568 18453593 5 74 4.0 3.0 3.5 1.1 96 chrX 18453497 intron CG32547 - chrX 18453545 intron CG32547 - chrX 18453593 intron CG32547 - chrX_5_18450001 chrX_18450001 RAL-233 1099 chrX 18486115 18486142 chrX 18486204 18486229 8 88 3.0 2.0 2.5 2.3 114 chrX 18486115 exon psh - chrX 18486172 intron psh - chrX 18486229 intron psh - chrX_8_18485001 chrX_18485001 RAL-233 1100 chrX 18558786 18558804 chrX 18558867 18558886 8 82 0.0 1.5 0.8 4.4 100 chrX 18558786 intron Bx + chrX 18558836 intron Bx + chrX 18558886 intron Bx + chrX_8_18555001 chrX_18555001 RAL-233 1101 chrX 18645013 18645042 chrX 18645111 18645139 7 97 0.0 1.0 0.5 4.7 126 chrX 18645013 intron Rip11 - chrX 18645076 intron Rip11 - chrX 18645139 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-233 1102 chrX 18947501 18947534 chrX 18947594 18947627 7 93 4.0 0.5 2.2 2.2 126 chrX 18947501 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947627 intron CG43759 + chrX_7_18945001 chrX_18945001 RAL-233 1103 chrX 19037971 19038001 chrX 19038100 19038128 4 128 2.0 2.0 2.0 1.3 157 chrX 19037971 intergenic not near genes chrX 19038050 intergenic not near genes chrX 19038128 intergenic not near genes chrX_4_19035001 chrX_19035001 RAL-233 1104 chrX 19048223 19048250 chrX 19048313 19048340 9 90 2.0 1.0 1.5 3.6 117 chrX 19048223 intergenic not near genes chrX 19048282 intergenic not near genes chrX 19048340 intergenic not near genes chrX_9_19045001 chrX_19045001 RAL-233 1105 chrX 19080329 19080355 chrX 19080435 19080461 6 105 0.5 0.5 0.5 4.0 132 chrX 19080329 intergenic not near genes chrX 19080395 intergenic not near genes chrX 19080461 intergenic not near genes chrX_6_19080001 chrX_19080001 RAL-233 1106 chrX 19084104 19084121 chrX 19084224 19084239 4 119 0.0 0.0 0.0 4.0 135 chrX 19084104 intergenic CR45503 + chrX 19084172 intergenic CR45503 + chrX 19084239 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-233 1107 chrX 19125693 19125705 chrX 19125821 19125831 6 128 1.5 1.5 1.5 2.4 138 chrX 19125693 intron tgy - chrX 19125762 intron tgy - chrX 19125831 intron tgy - chrX_6_19125001 chrX_19125001 RAL-233 1108 chrX 19170597 19170602 chrX 19170670 19170678 4 76 7.0 6.0 6.5 0.5 81 chrX 19170597 5` UTR Inx5 - chrX 19170638 5` UTR Inx5 - chrX 19170678 5` UTR Inx5 - chrX_4_19170001 chrX_19170001 RAL-233 1109 chrX 19176212 19176233 chrX 19176295 19176317 8 83 4.0 2.5 3.2 1.9 105 chrX 19176212 3` UTR CG7556 - chrX 19176264 3` UTR CG7556 - chrX 19176317 3` UTR CG7556 - chrX_8_19175001 chrX_19175001 RAL-233 1110 chrX 19294209 19294239 chrX 19294454 19294485 10 246 2.0 2.5 2.2 3.1 276 chrX 19294209 intron CG8034 - chrX 19294347 intron CG8034 - chrX 19294485 intron CG8034 - chrX_10_19290001 chrX_19290001 RAL-233 1111 chrX 19377880 19377906 chrX 19378042 19378063 7 162 4.0 3.0 3.5 1.6 183 chrX 19377880 intron kek5 + chrX 19377972 intron kek5 + chrX 19378063 intron kek5 + chrX_7_19375001 chrX_19375001 RAL-233 1112 chrX 19421598 19421627 chrX 19421695 19421724 6 97 3.0 0.5 1.8 2.1 126 chrX 19421598 intron kek5 + chrX 19421661 intron kek5 + chrX 19421724 intron kek5 + chrX_6_19420001 chrX_19420001 RAL-233 1113 chrX 19528435 19528466 chrX 19528523 19528546 8 86 4.0 4.0 4.0 1.6 111 chrX 19528435 intron CoRest + chrX 19528490 intron CoRest + chrX 19528546 intron CoRest + chrX_8_19525001 chrX_19525001 RAL-233 1114 chrX 19710075 19710103 chrX 19711861 19711884 S-element 8 1785 1.5 5.0 3.2 1.9 1809 chrX 19710075 intron meso18E - chrX 19710980 intron meso18E - chrX 19711884 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-233 1115 chrX 19992426 19992433 chrX 19992491 19992509 4 73 3.0 6.0 4.5 0.7 83 chrX 19992426 intergenic not near genes chrX 19992468 intergenic not near genes chrX 19992509 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-233 1116 chrX 20105202 20105231 chrX 20105306 20105334 7 104 22.5 28.5 25.5 0.3 132 chrX 20105202 intergenic not near genes chrX 20105268 intergenic not near genes chrX 20105334 intergenic not near genes chrX_7_20105001 chrX_20105001 RAL-233 1117 chrX 20129056 20129086 chrX 20129336 20129363 4 278 1.5 0.5 1.0 2.0 307 chrX 20129056 intergenic not near genes chrX 20129210 intergenic not near genes chrX 20129363 intergenic not near genes chrX_4_20125001 chrX_20125001 RAL-233 1118 chrX 20144293 20144315 chrX 20144373 20144386 4 78 0.0 0.5 0.2 3.3 93 chrX 20144293 intergenic not near genes chrX 20144340 intergenic not near genes chrX 20144386 intergenic not near genes chrX_4_20140001 chrX_20140001 RAL-233 1119 chrX 20144844 20144872 chrX 20145014 20145042 5 170 1.0 2.5 1.8 1.8 198 chrX 20144844 intergenic not near genes chrX 20144943 intergenic not near genes chrX 20145042 intergenic not near genes chrX_5_20140001 chrX_20140001 RAL-233 1120 chrX 20374108 20374124 chrX 20374182 20374200 4 76 0.5 3.0 1.8 1.4 92 chrX 20374108 intergenic not near genes chrX 20374154 intergenic not near genes chrX 20374200 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-233 1121 chrX 20377325 20377348 chrX 20378792 20378815 hobo 6 1465 5.0 3.0 4.0 1.2 1490 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-233 1122 chrX 20499162 20499186 chrX 20499245 20499269 4 83 0.5 3.0 1.8 1.4 107 chrX 20499162 intron RhoGAP19D - chrX 20499216 intron RhoGAP19D - chrX 20499269 intron RhoGAP19D - chrX_4_20495001 chrX_20495001 RAL-233 1123 chrX 20594326 20594332 chrX 20594388 20594418 4 71 0.0 1.0 0.5 2.7 92 chrX 20594326 intron RunxA - chrX 20594372 intron RunxA - chrX 20594418 intron RunxA - chrX_4_20590001 chrX_20590001 RAL-233 1124 chrX 20836738 20836756 chrX 20844340 20844358 roo 4 7602 0.0 1.5 0.8 2.2 7620 chrX 20836738 intron shakB - chrX 20840548 intron shakB - chrX 20844358 intron shakB - chrX_4_20840001 chrX_20840001 RAL-233 1125 chrX 20940723 20940752 chrX 20942192 20942221 hobo 8 1468 2.5 0.5 1.5 3.2 1498 chrX 20940723 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942221 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-233 1126 chrX 21042558 21042584 chrX 21045344 21045371 8 2786 15.5 18.0 16.8 0.4 2813 chrX 21042558 exon Mgstl + chrX 21043964 exon,3` UTR Mgstl +,CR44431 - chrX 21045371 intron Cbs + chrX_8_21040001 chrX_21040001 RAL-233 1127 chrX 21086139 21086158 chrX 21087164 21087187 jockey 4 1028 3.0 1.5 2.2 1.2 1048 chrX 21086139 intergenic not near genes chrX 21086663 intergenic not near genes chrX 21087187 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-233 1128 chrX 21088041 21088060 chrX 21088173 21088186 4 130 1.0 1.5 1.2 1.8 145 chrX 21088041 intergenic not near genes chrX 21088114 intergenic not near genes chrX 21088186 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-233 1129 chrX 21500566 21500589 chrX 21500767 21500790 4 198 0.0 3.0 1.5 1.6 224 chrX 21500566 intron CR45082 - chrX 21500678 intron CR45082 - chrX 21500790 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-233 1130 chrX 22798772 22798794 chrX 22798889 22798910 5 117 0.5 0.5 0.5 3.3 138 chrX 22798772 intergenic not near genes chrX 22798841 intergenic not near genes chrX 22798910 intergenic not near genes chrX_5_22795001 chrX_22795001 RAL-233 1131 chrX 22992405 22992419 chrX 22992532 22992550 4 129 1.0 1.0 1.0 2.0 145 chrX 22992405 intron,intron stnA -,stnB - chrX 22992478 intron,intron stnA -,stnB - chrX 22992550 intron,intron stnA -,stnB - chrX_4_22990001 chrX_22990001 RAL-233 1132 chrY 975806 975824 chrY 975877 975927 5 85 99.5 113.5 106.5 0.0 121 chrY 975806 intergenic not near genes chrY 975866 intergenic not near genes chrY 975927 intergenic not near genes chrY_5_975001 chrY_975001 RAL-233