SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47473 47489 chr2L 52561 52593 jockey 6 5102 5.0 2.5 3.8 1.2 5120 chr2L 47473 intron Cda5 - chr2L 50033 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-229_75b 2 chr2L 263301 263329 chr2L 263445 263475 8 145 0.5 2.0 1.2 3.6 174 chr2L 263301 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263475 intron,3` UTR CG3645 -,CG17075 - chr2L_8_260001 chr2L_260001 RAL-229_75b 3 chr2L 263064 263077 chr2L 267687 267699 4 4622 12.5 16.5 14.5 0.3 4635 chr2L 263064 intron,3` UTR CG3645 -,CG17075 - chr2L 265382 intron,exon CG3645 -,CG17075 - chr2L 267699 intron CG3645 - chr2L_4_265001 chr2L_265001 RAL-229_75b 4 chr2L 395741 395778 chr2L 395823 395847 8 74 2.5 3.5 3.0 2.0 106 chr2L 395741 intergenic CR43718 + chr2L 395794 intergenic CR43718 + chr2L 395847 intergenic CR43718 + chr2L_8_395001 chr2L_395001 RAL-229_75b 5 chr2L 666290 666309 chr2L 666366 666385 4 76 1.0 0.0 0.5 2.7 95 chr2L 666290 intron ds - chr2L 666338 intron ds - chr2L 666385 intron ds - chr2L_4_665001 chr2L_665001 RAL-229_75b 6 chr2L 736886 736900 chr2L 736989 737005 4 104 2.0 2.0 2.0 1.3 119 chr2L 736886 intergenic Eaat2 - chr2L 736946 intergenic Eaat2 - chr2L 737005 intergenic Eaat2 - chr2L_4_735001 chr2L_735001 RAL-229_75b 7 chr2L 764566 764578 chr2L 764655 764678 4 97 1.5 1.5 1.5 1.6 112 chr2L 764566 intergenic not near genes chr2L 764622 intergenic not near genes chr2L 764678 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-229_75b 8 chr2L 770467 770494 chr2L 772247 772269 Bari1 5 1777 2.0 1.5 1.8 1.8 1802 chr2L 770467 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772269 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-229_75b 9 chr2L 795260 795287 chr2L 795370 795393 5 109 3.5 0.5 2.0 1.7 133 chr2L 795260 intergenic not near genes chr2L 795326 intergenic not near genes chr2L 795393 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-229_75b 10 chr2L 877840 877863 chr2L 877921 877944 8 80 2.5 0.5 1.5 3.2 104 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-229_75b 11 chr2L 931645 931667 chr2L 931720 931746 6 77 1.0 5.5 3.2 1.4 101 chr2L 931645 intron CG4341 + chr2L 931696 intron CG4341 + chr2L 931746 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-229_75b 12 chr2L 976888 976908 chr2L 984524 984544 roo 8 7634 2.5 0.5 1.5 3.2 7656 chr2L 976888 intergenic not near genes chr2L 980716 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-229_75b 13 chr2L 1005913 1005936 chr2L 1005997 1006021 6 84 2.0 3.0 2.5 1.7 108 chr2L 1005913 intergenic not near genes chr2L 1005967 intergenic not near genes chr2L 1006021 intergenic not near genes chr2L_6_1005001 chr2L_1005001 RAL-229_75b 14 chr2L 1058659 1058686 chr2L 1058735 1058761 10 73 4.0 4.5 4.2 1.9 102 chr2L 1058659 intron S - chr2L 1058710 intron S - chr2L 1058761 intron S - chr2L_10_1055001 chr2L_1055001 RAL-229_75b 15 chr2L 1066098 1066125 chr2L 1066178 1066201 5 79 1.0 2.0 1.5 2.0 103 chr2L 1066098 intron S - chr2L 1066150 intron S - chr2L 1066201 intron S - chr2L_5_1065001 chr2L_1065001 RAL-229_75b 16 chr2L 1142316 1142321 chr2L 1142533 1142538 4 216 1.5 1.5 1.5 1.6 222 chr2L 1142316 intergenic not near genes chr2L 1142427 intergenic CR45717 + chr2L 1142538 intergenic CR45717 + chr2L_4_1140001 chr2L_1140001 RAL-229_75b 17 chr2L 1220131 1220155 chr2L 1227597 1227620 blood 7 7465 2.0 1.5 1.8 2.5 7489 chr2L 1220131 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227620 intron CG42329 + chr2L_7_1220001 chr2L_1220001 RAL-229_75b 18 chr2L 1244411 1244424 chr2L 1244488 1244500 5 77 1.5 3.0 2.2 1.6 89 chr2L 1244411 intergenic not near genes chr2L 1244456 intergenic not near genes chr2L 1244500 intergenic not near genes chr2L_5_1240001 chr2L_1240001 RAL-229_75b 19 chr2L 1287287 1287309 chr2L 1287363 1287385 4 75 4.5 1.5 3.0 1.0 98 chr2L 1287287 intron robo3 + chr2L 1287336 intron robo3 + chr2L 1287385 intron robo3 + chr2L_4_1285001 chr2L_1285001 RAL-229_75b 20 chr2L 1503424 1503456 chr2L 1503502 1503534 10 78 1.5 1.0 1.2 4.5 110 chr2L 1503424 intron CR44064 + chr2L 1503479 intron CR44064 + chr2L 1503534 intron CR44064 + chr2L_10_1500001 chr2L_1500001 RAL-229_75b 21 chr2L 1570692 1570717 chr2L 1573556 1573589 F-element 4 2870 3.5 3.0 3.2 1.0 2897 chr2L 1570692 intron haf + chr2L 1572140 intron haf + chr2L 1573589 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-229_75b 22 chr2L 1590968 1590991 chr2L 1591044 1591067 7 75 1.0 2.0 1.5 2.8 99 chr2L 1590968 intron haf + chr2L 1591018 intron haf + chr2L 1591067 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-229_75b 23 chr2L 1594432 1594459 chr2L 1594598 1594622 9 163 1.5 2.5 2.0 3.0 190 chr2L 1594432 intron haf + chr2L 1594527 intron haf + chr2L 1594622 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-229_75b 24 chr2L 1635398 1635429 chr2L 1635534 1635565 6 136 0.5 2.0 1.2 2.7 167 chr2L 1635398 intergenic not near genes chr2L 1635482 intergenic not near genes chr2L 1635565 intergenic not near genes chr2L_6_1635001 chr2L_1635001 RAL-229_75b 25 chr2L 1656486 1656515 chr2L 1656599 1656628 9 111 2.5 4.0 3.2 2.1 142 chr2L 1656486 intron chinmo + chr2L 1656557 intron chinmo + chr2L 1656628 intron chinmo + chr2L_9_1655001 chr2L_1655001 RAL-229_75b 26 chr2L 1711355 1711387 chr2L 1711678 1711711 mdg3 7 318 2.0 1.0 1.5 2.8 356 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-229_75b 27 chr2L 1721843 1721853 chr2L 1721912 1721937 6 81 0.5 2.0 1.2 2.7 94 chr2L 1721843 intron Rim2 - chr2L 1721890 intron Rim2 - chr2L 1721937 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-229_75b 28 chr2L 1828414 1828434 chr2L 1828498 1828518 6 84 0.0 2.0 1.0 3.0 104 chr2L 1828414 intergenic not near genes chr2L 1828466 intergenic not near genes chr2L 1828518 intergenic not near genes chr2L_6_1825001 chr2L_1825001 RAL-229_75b 29 chr2L 1883419 1883443 chr2L 1884001 1884023 5 580 0.5 1.0 0.8 2.8 604 chr2L 1883419 intron CG15358 - chr2L 1883721 intron CG15358 - chr2L 1884023 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-229_75b 30 chr2L 1925491 1925500 chr2L 1925566 1925577 5 76 1.5 2.5 2.0 1.7 86 chr2L 1925491 intron CG7337 + chr2L 1925534 intron CG7337 + chr2L 1925577 intron CG7337 + chr2L_5_1925001 chr2L_1925001 RAL-229_75b 31 chr2L 1999023 1999032 chr2L 1999143 1999151 5 120 1.0 0.0 0.5 3.3 128 chr2L 1999023 intron CG33543 - chr2L 1999087 intron CG33543 - chr2L 1999151 intron CG33543 - chr2L_5_1995001 chr2L_1995001 RAL-229_75b 32 chr2L 2100381 2100402 chr2L 2109532 2109553 roo 6 9150 2.5 1.5 2.0 2.0 9172 chr2L 2100381 intron dpr3 - chr2L 2104967 intron dpr3 - chr2L 2109553 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-229_75b 33 chr2L 2179558 2179583 chr2L 2179789 2179813 10 231 1.5 0.5 1.0 5.0 255 chr2L 2179558 intergenic not near genes chr2L 2179686 intergenic not near genes chr2L 2179813 intergenic not near genes chr2L_10_2175001 chr2L_2175001 RAL-229_75b 34 chr2L 2611505 2611515 chr2L 2611615 2611625 6 110 2.5 2.0 2.2 1.9 120 chr2L 2611505 intergenic CG15395 + chr2L 2611565 intergenic CG15395 + chr2L 2611625 intergenic CG15395 + chr2L_6_2610001 chr2L_2610001 RAL-229_75b 35 chr2L 2698878 2698890 chr2L 2698963 2698977 5 86 0.0 3.5 1.8 1.8 99 chr2L 2698878 intron CG31690 + chr2L 2698928 intron CG31690 + chr2L 2698977 intron CG31690 + chr2L_5_2695001 chr2L_2695001 RAL-229_75b 36 chr2L 2808898 2808904 chr2L 2808990 2808996 5 92 1.5 2.0 1.8 1.8 98 chr2L 2808898 intron daw + chr2L 2808947 intron daw + chr2L 2808996 5` UTR daw + chr2L_5_2805001 chr2L_2805001 RAL-229_75b 37 chr2L 2826537 2826572 chr2L 2826629 2826648 4 84 0.0 2.5 1.2 1.8 111 chr2L 2826537 intron Duox - chr2L 2826592 intron Duox - chr2L 2826648 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-229_75b 38 chr2L 3073031 3073065 chr2L 3078234 3078268 copia 8 5202 1.5 2.5 2.0 2.7 5237 chr2L 3073031 intron toc - chr2L 3075650 intron toc - chr2L 3078268 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-229_75b 39 chr2L 3108868 3108894 chr2L 3108945 3108971 10 76 1.5 0.0 0.8 5.6 103 chr2L 3108868 intron toc - chr2L 3108920 intron toc - chr2L 3108971 intron toc - chr2L_10_3105001 chr2L_3105001 RAL-229_75b 40 chr2L 3192227 3192232 chr2L 3192321 3192343 4 102 1.0 1.5 1.2 1.8 116 chr2L 3192227 intron CG34393 - chr2L 3192285 intron CG34393 - chr2L 3192343 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-229_75b 41 chr2L 3228218 3228240 chr2L 3228296 3228318 6 78 1.5 3.0 2.2 1.9 100 chr2L 3228218 intergenic not near genes chr2L 3228268 intergenic not near genes chr2L 3228318 intergenic not near genes chr2L_6_3225001 chr2L_3225001 RAL-229_75b 42 chr2L 3236713 3236745 chr2L 3236798 3236828 8 83 1.0 3.0 2.0 2.7 115 chr2L 3236713 intergenic not near genes chr2L 3236770 intergenic not near genes chr2L 3236828 intergenic not near genes chr2L_8_3235001 chr2L_3235001 RAL-229_75b 43 chr2L 3445305 3445323 chr2L 3445828 3445846 4 522 1.5 2.0 1.8 1.4 541 chr2L 3445305 intergenic not near genes chr2L 3445576 intergenic CG2772 + chr2L 3445846 intergenic CG2772 + chr2L_4_3445001 chr2L_3445001 RAL-229_75b 44 chr2L 3523033 3523046 chr2L 3523146 3523157 6 113 0.0 1.0 0.5 4.0 124 chr2L 3523033 exon Sr-CIV - chr2L 3523095 intron Sr-CIV - chr2L 3523157 exon Sr-CIV - chr2L_6_3520001 chr2L_3520001 RAL-229_75b 45 chr2L 3582895 3582909 chr2L 3582971 3582986 4 76 1.0 3.0 2.0 1.3 91 chr2L 3582895 intergenic not near genes chr2L 3582940 intergenic not near genes chr2L 3582986 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-229_75b 46 chr2L 3634109 3634124 chr2L 3634191 3634206 6 80 3.0 2.5 2.8 1.6 97 chr2L 3634109 intron for - chr2L 3634158 intron for - chr2L 3634206 intron for - chr2L_6_3630001 chr2L_3630001 RAL-229_75b 47 chr2L 3785473 3785499 chr2L 3785549 3785575 5 73 2.0 2.5 2.2 1.6 102 chr2L 3785473 exon CG31960 + chr2L 3785524 3` UTR CG31960 + chr2L 3785575 3` UTR CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-229_75b 48 chr2L 3819031 3819057 chr2L 3819112 3819139 6 82 1.0 0.5 0.8 3.3 108 chr2L 3819031 intergenic CR44077 + chr2L 3819085 intergenic not near genes chr2L 3819139 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-229_75b 49 chr2L 3880476 3880509 chr2L 3880975 3881007 6 498 1.0 1.5 1.2 2.7 531 chr2L 3880476 intron capu - chr2L 3880742 intron capu - chr2L 3881007 intron capu - chr2L_6_3880001 chr2L_3880001 RAL-229_75b 50 chr2L 3908414 3908426 chr2L 3908656 3908685 6 250 0.0 4.0 2.0 2.0 271 chr2L 3908414 intron fred - chr2L 3908550 intron fred - chr2L 3908685 intron fred - chr2L_6_3905001 chr2L_3905001 RAL-229_75b 51 chr2L 3943799 3943825 chr2L 3943884 3943916 4 88 1.5 2.0 1.8 1.4 117 chr2L 3943799 intron fred - chr2L 3943858 intron fred - chr2L 3943916 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-229_75b 52 chr2L 4001664 4001682 chr2L 4001760 4001780 4 96 0.5 2.5 1.5 1.6 116 chr2L 4001664 intergenic CR45344 + chr2L 4001722 intergenic CR45344 + chr2L 4001780 intergenic CR45344 + chr2L_4_4000001 chr2L_4000001 RAL-229_75b 53 chr2L 4082809 4082839 chr2L 4082892 4082922 5 83 1.5 0.0 0.8 2.8 113 chr2L 4082809 intron ed + chr2L 4082866 intron ed + chr2L 4082922 intron ed + chr2L_5_4080001 chr2L_4080001 RAL-229_75b 54 chr2L 4150623 4150649 chr2L 4150703 4150704 7 75 0.5 3.0 1.8 2.5 81 chr2L 4150623 exon CG2955 + chr2L 4150664 exon CG2955 + chr2L 4150704 exon CG2955 + chr2L_7_4150001 chr2L_4150001 RAL-229_75b 55 chr2L 4351479 4351499 chr2L 4351555 4351563 6 74 1.0 1.5 1.2 2.7 84 chr2L 4351479 intergenic CR44700 + chr2L 4351521 intergenic CR44700 + chr2L 4351563 intergenic CR44700 + chr2L_6_4350001 chr2L_4350001 RAL-229_75b 56 chr2L 4601702 4601737 chr2L 4609143 4609178 mdg1 12 7441 2.5 3.5 3.0 3.0 7476 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-229_75b 57 chr2L 4656547 4656573 chr2L 4656623 4656651 6 76 2.0 1.0 1.5 2.4 104 chr2L 4656547 intergenic not near genes chr2L 4656599 intergenic not near genes chr2L 4656651 intergenic not near genes chr2L_6_4655001 chr2L_4655001 RAL-229_75b 58 chr2L 4701841 4701864 chr2L 4701981 4702001 7 138 0.5 2.0 1.2 3.2 160 chr2L 4701841 intron CG34351 + chr2L 4701921 intron CG34351 + chr2L 4702001 intron CG34351 + chr2L_7_4700001 chr2L_4700001 RAL-229_75b 59 chr2L 4841086 4841097 chr2L 4841162 4841173 5 76 3.5 5.5 4.5 0.9 87 chr2L 4841086 intron CG12194 + chr2L 4841130 intron CG12194 + chr2L 4841173 exon CG12194 + chr2L_5_4840001 chr2L_4840001 RAL-229_75b 60 chr2L 4858464 4858482 chr2L 4858552 4858570 5 88 3.0 0.0 1.5 2.0 106 chr2L 4858464 intron pog + chr2L 4858517 intron pog + chr2L 4858570 intron pog + chr2L_5_4855001 chr2L_4855001 RAL-229_75b 61 chr2L 4862288 4862296 chr2L 4862364 4862372 4 76 7.0 6.0 6.5 0.5 84 chr2L 4862288 intron pog + chr2L 4862330 intron pog + chr2L 4862372 intron pog + chr2L_4_4860001 chr2L_4860001 RAL-229_75b 62 chr2L 5061426 5061439 chr2L 5061507 5061520 4 80 5.0 4.0 4.5 0.7 94 chr2L 5061426 intron qtc + chr2L 5061473 intron qtc + chr2L 5061520 intron qtc + chr2L_4_5060001 chr2L_5060001 RAL-229_75b 63 chr2L 5088084 5088095 chr2L 5092531 5092541 4 4446 6.0 3.0 4.5 0.7 4457 chr2L 5088084 intron pgant5 - chr2L 5090312 intron pgant5 - chr2L 5092541 intron pgant5 - chr2L_4_5090001 chr2L_5090001 RAL-229_75b 64 chr2L 5276726 5276733 chr2L 5276806 5276816 4 83 0.0 1.0 0.5 2.7 90 chr2L 5276726 exon Bsg25D - chr2L 5276771 intron Bsg25D - chr2L 5276816 intron Bsg25D - chr2L_4_5275001 chr2L_5275001 RAL-229_75b 65 chr2L 5416650 5416670 chr2L 5416731 5416751 4 81 0.5 2.0 1.2 1.8 101 chr2L 5416650 intergenic H15 + chr2L 5416700 intergenic H15 + chr2L 5416751 intergenic H15 + chr2L_4_5415001 chr2L_5415001 RAL-229_75b 66 chr2L 5448009 5448023 chr2L 5448093 5448107 5 84 0.0 1.0 0.5 3.3 98 chr2L 5448009 intergenic not near genes chr2L 5448058 intergenic not near genes chr2L 5448107 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-229_75b 67 chr2L 5468695 5468727 chr2L 5468777 5468800 7 79 1.5 1.5 1.5 2.8 105 chr2L 5468695 intergenic not near genes chr2L 5468748 intergenic not near genes chr2L 5468800 intergenic not near genes chr2L_7_5465001 chr2L_5465001 RAL-229_75b 68 chr2L 5805206 5805238 chr2L 5805306 5805328 13 100 0.5 0.5 0.5 8.7 122 chr2L 5805206 intergenic CG11034 + chr2L 5805267 intergenic CG11034 + chr2L 5805328 intergenic CG11034 + chr2L_13_5805001 chr2L_5805001 RAL-229_75b 69 chr2L 5827712 5827738 chr2L 5836720 5836741 roo 5 9007 2.0 4.0 3.0 1.2 9029 chr2L 5827712 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836741 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-229_75b 70 chr2L 5870480 5870506 chr2L 5870549 5870582 9 74 0.0 1.0 0.5 6.0 102 chr2L 5870480 intron rau - chr2L 5870531 intron rau - chr2L 5870582 intron rau - chr2L_9_5870001 chr2L_5870001 RAL-229_75b 71 chr2L 5993330 5993362 chr2L 5993421 5993453 11 89 1.5 3.0 2.2 3.4 123 chr2L 5993330 exon lid - chr2L 5993392 intron lid - chr2L 5993453 intron lid - chr2L_11_5990001 chr2L_5990001 RAL-229_75b 72 chr2L 6050449 6050465 chr2L 6050553 6050568 4 104 4.0 1.5 2.8 1.1 119 chr2L 6050449 intergenic CG12393 +,CG9135 + chr2L 6050508 intergenic CG12393 +,CG9135 + chr2L 6050568 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-229_75b 73 chr2L 6185441 6185471 chr2L 6185519 6185548 6 70 2.0 3.0 2.5 1.7 107 chr2L 6185441 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185548 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-229_75b 74 chr2L 6283952 6283968 chr2L 6284063 6284079 4 111 1.0 0.5 0.8 2.2 127 chr2L 6283952 intron Ddr + chr2L 6284016 intron Ddr + chr2L 6284079 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-229_75b 75 chr2L 6285898 6285932 chr2L 6286064 6286097 10 162 2.5 2.0 2.2 3.1 199 chr2L 6285898 intron Ddr + chr2L 6285998 intron Ddr + chr2L 6286097 intron Ddr + chr2L_10_6285001 chr2L_6285001 RAL-229_75b 76 chr2L 6308333 6308345 chr2L 6308416 6308428 4 83 2.0 4.5 3.2 1.0 95 chr2L 6308333 intron Ddr + chr2L 6308380 intron,3` UTR Ddr +,CG43922 - chr2L 6308428 intron,3` UTR Ddr +,CG43922 - chr2L_4_6305001 chr2L_6305001 RAL-229_75b 77 chr2L 6426855 6426884 chr2L 6445115 6445125 roo 6 18256 2.0 3.5 2.8 1.6 18270 chr2L 6426855 3` UTR CG9527 - chr2L 6435990 intron CG9527 - chr2L 6445125 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-229_75b 78 chr2L 6544375 6544394 chr2L 6544466 6544486 7 92 3.5 4.0 3.8 1.5 111 chr2L 6544375 intron eya - chr2L 6544430 intron eya - chr2L 6544486 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-229_75b 79 chr2L 6590094 6590123 chr2L 6590172 6590201 6 77 1.5 3.5 2.5 1.7 107 chr2L 6590094 intron CG11319 - chr2L 6590148 intron CG11319 - chr2L 6590201 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-229_75b 80 chr2L 6598117 6598147 chr2L 6599074 6599104 5 957 3.0 3.0 3.0 1.2 987 chr2L 6598117 intron CG11319 - chr2L 6598610 intron CG11319 - chr2L 6599104 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-229_75b 81 chr2L 6604257 6604275 chr2L 6604769 6604786 5 509 3.5 3.5 3.5 1.1 529 chr2L 6604257 intergenic not near genes chr2L 6604522 intergenic not near genes chr2L 6604786 intergenic not near genes chr2L_5_6600001 chr2L_6600001 RAL-229_75b 82 chr2L 6640907 6640929 chr2L 6641002 6641022 6 94 3.0 1.5 2.2 1.9 115 chr2L 6640907 exon CG31635 - chr2L 6640964 intron CG31635 - chr2L 6641022 intron CG31635 - chr2L_6_6640001 chr2L_6640001 RAL-229_75b 83 chr2L 6746096 6746117 chr2L 6746172 6746193 4 76 4.0 4.0 4.0 0.8 97 chr2L 6746096 intron CG11221 + chr2L 6746144 intron CG11221 + chr2L 6746193 intron CG11221 + chr2L_4_6745001 chr2L_6745001 RAL-229_75b 84 chr2L 7025929 7025932 chr2L 7026012 7026017 4 84 0.0 1.0 0.5 2.7 88 chr2L 7025929 intron CG31908 - chr2L 7025973 intron CG31908 - chr2L 7026017 intron CG31908 - chr2L_4_7025001 chr2L_7025001 RAL-229_75b 85 chr2L 7030079 7030108 chr2L 7030160 7030189 5 80 0.0 1.0 0.5 3.3 110 chr2L 7030079 intergenic Rab30 - chr2L 7030134 intergenic Rab30 - chr2L 7030189 intergenic Rab30 - chr2L_5_7030001 chr2L_7030001 RAL-229_75b 86 chr2L 7089880 7089906 chr2L 7089989 7090019 7 111 0.5 0.5 0.5 4.7 139 chr2L 7089880 intergenic not near genes chr2L 7089950 intergenic not near genes chr2L 7090019 intergenic not near genes chr2L_7_7085001 chr2L_7085001 RAL-229_75b 87 chr2L 7244723 7244755 chr2L 7244848 7244877 5 124 0.5 1.5 1.0 2.5 154 chr2L 7244723 intron Ndae1 - chr2L 7244800 intron Ndae1 - chr2L 7244877 intron Ndae1 - chr2L_5_7240001 chr2L_7240001 RAL-229_75b 88 chr2L 7319276 7319285 chr2L 7319354 7319374 6 86 2.5 1.0 1.8 2.1 98 chr2L 7319276 intergenic not near genes chr2L 7319325 intergenic not near genes chr2L 7319374 intergenic not near genes chr2L_6_7315001 chr2L_7315001 RAL-229_75b 89 chr2L 7343323 7343359 chr2L 7350439 7350464 roo 6 7112 2.0 2.5 2.2 1.9 7141 chr2L 7343323 intron Wnt6 + chr2L 7346894 intron Wnt6 + chr2L 7350464 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-229_75b 90 chr2L 7493669 7493702 chr2L 7493880 7493913 9 210 2.0 0.5 1.2 4.1 244 chr2L 7493669 intron Ziz - chr2L 7493791 intron Ziz - chr2L 7493913 intron Ziz - chr2L_9_7490001 chr2L_7490001 RAL-229_75b 91 chr2L 7516338 7516359 chr2L 7516453 7516472 4 114 1.5 0.5 1.0 2.0 134 chr2L 7516338 intron RapGAP1 - chr2L 7516405 intron RapGAP1 - chr2L 7516472 intron RapGAP1 - chr2L_4_7515001 chr2L_7515001 RAL-229_75b 92 chr2L 7749193 7749213 chr2L 7749409 7749429 4 215 3.0 0.5 1.8 1.4 236 chr2L 7749193 intergenic not near genes chr2L 7749311 intergenic not near genes chr2L 7749429 intergenic not near genes chr2L_4_7745001 chr2L_7745001 RAL-229_75b 93 chr2L 7861308 7861333 chr2L 7861412 7861437 5 104 1.0 0.0 0.5 3.3 129 chr2L 7861308 intergenic TwdlE - chr2L 7861372 intergenic not near genes chr2L 7861437 intergenic not near genes chr2L_5_7860001 chr2L_7860001 RAL-229_75b 94 chr2L 7922745 7922768 chr2L 7922826 7922849 9 79 1.0 2.5 1.8 3.2 104 chr2L 7922745 intron Snoo - chr2L 7922797 intron Snoo - chr2L 7922849 intron Snoo - chr2L_9_7920001 chr2L_7920001 RAL-229_75b 95 chr2L 7959042 7959068 chr2L 7960452 7960479 pogo 9 1411 3.0 0.0 1.5 3.6 1437 chr2L 7959042 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960479 intron Snoo - chr2L_9_7955001 chr2L_7955001 RAL-229_75b 96 chr2L 8013614 8013632 chr2L 8018818 8018834 copia 4 5204 3.5 0.0 1.8 1.4 5220 chr2L 8013614 intron Tg + chr2L 8016224 intron Tg + chr2L 8018834 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-229_75b 97 chr2L 8164594 8164614 chr2L 8164676 8164693 11 80 2.5 4.5 3.5 2.4 99 chr2L 8164594 intron Piezo + chr2L 8164644 intron Piezo + chr2L 8164693 intron Piezo + chr2L_11_8160001 chr2L_8160001 RAL-229_75b 98 chr2L 8184928 8184940 chr2L 8185019 8185031 4 91 3.0 2.5 2.8 1.1 103 chr2L 8184928 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185031 intron Piezo + chr2L_4_8180001 chr2L_8180001 RAL-229_75b 99 chr2L 8184941 8184950 chr2L 8185016 8185040 4 87 2.5 1.5 2.0 1.3 99 chr2L 8184941 intron Piezo + chr2L 8184990 intron Piezo + chr2L 8185040 intron Piezo + chr2L_4_8180001 chr2L_8180001 RAL-229_75b 100 chr2L 8277859 8277869 chr2L 8277936 8277947 4 79 0.0 0.0 0.0 4.0 88 chr2L 8277859 intron Btk29A - chr2L 8277903 intron Btk29A - chr2L 8277947 intron Btk29A - chr2L_4_8275001 chr2L_8275001 RAL-229_75b 101 chr2L 8287320 8287345 chr2L 8287550 8287564 7 227 1.0 1.5 1.2 3.2 244 chr2L 8287320 intron Btk29A - chr2L 8287442 intron Btk29A - chr2L 8287564 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-229_75b 102 chr2L 8510136 8510162 chr2L 8510225 8510239 6 82 2.0 0.5 1.2 2.7 103 chr2L 8510136 exon CG13096 - chr2L 8510188 intron CG13096 - chr2L 8510239 intron CG13096 - chr2L_6_8510001 chr2L_8510001 RAL-229_75b 103 chr2L 8701554 8701570 chr2L 8701630 8701647 4 76 1.0 2.0 1.5 1.6 93 chr2L 8701554 intron Hnf4 - chr2L 8701600 intron Hnf4 - chr2L 8701647 intron Hnf4 - chr2L_4_8700001 chr2L_8700001 RAL-229_75b 104 chr2L 8723113 8723139 chr2L 8731490 8731516 Tirant 6 8375 3.0 1.5 2.2 1.9 8403 chr2L 8723113 intron raw - chr2L 8727314 intron raw - chr2L 8731516 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-229_75b 105 chr2L 8789309 8789331 chr2L 8789384 8789407 9 74 2.0 1.0 1.5 3.6 98 chr2L 8789309 intergenic not near genes chr2L 8789358 intergenic not near genes chr2L 8789407 intergenic not near genes chr2L_9_8785001 chr2L_8785001 RAL-229_75b 106 chr2L 8976223 8976249 chr2L 8976315 8976332 5 88 1.0 1.0 1.0 2.5 109 chr2L 8976223 intergenic not near genes chr2L 8976278 intergenic not near genes chr2L 8976332 intergenic not near genes chr2L_5_8975001 chr2L_8975001 RAL-229_75b 107 chr2L 9025821 9025853 chr2L 9025905 9025936 10 79 3.5 2.5 3.0 2.5 115 chr2L 9025821 intron,3` UTR CG9582 -,CR44352 - chr2L 9025878 intron,3` UTR CG9582 -,CR44352 - chr2L 9025936 intron,3` UTR CG9582 -,CR44352 - chr2L_10_9025001 chr2L_9025001 RAL-229_75b 108 chr2L 9297378 9297404 chr2L 9297455 9297478 10 76 2.5 4.0 3.2 2.4 100 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297478 3` UTR Ggamma30A + chr2L_10_9295001 chr2L_9295001 RAL-229_75b 109 chr2L 9303410 9303490 chr2L 9303495 9303567 4 78 0.0 0.0 0.0 4.0 157 chr2L 9303410 intergenic not near genes chr2L 9303488 intergenic not near genes chr2L 9303567 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-229_75b 110 chr2L 9391687 9391703 chr2L 9391758 9391790 4 83 1.5 3.0 2.2 1.2 103 chr2L 9391687 intron Shawl - chr2L 9391738 intron Shawl - chr2L 9391790 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-229_75b 111 chr2L 9393505 9393529 chr2L 9396472 9396496 jockey 8 2967 0.5 5.5 3.0 2.0 2991 chr2L 9393505 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396496 intron Shawl - chr2L_8_9395001 chr2L_9395001 RAL-229_75b 112 chr2L 9454978 9455003 chr2L 9455080 9455104 5 102 2.5 2.0 2.2 1.6 126 chr2L 9454978 intron numb + chr2L 9455041 intron numb + chr2L 9455104 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-229_75b 113 chr2L 9457068 9457104 chr2L 9457145 9457177 5 71 2.0 3.0 2.5 1.4 109 chr2L 9457068 intron numb + chr2L 9457122 intron numb + chr2L 9457177 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-229_75b 114 chr2L 9873764 9873790 chr2L 9873859 9873886 7 95 0.5 4.5 2.5 2.0 122 chr2L 9873764 intron nAChRalpha6 - chr2L 9873825 intron nAChRalpha6 - chr2L 9873886 intron nAChRalpha6 - chr2L_7_9870001 chr2L_9870001 RAL-229_75b 115 chr2L 9973726 9973740 chr2L 9980844 9980859 HMS-Beagle 4 7118 3.5 2.0 2.8 1.1 7133 chr2L 9973726 intergenic not near genes chr2L 9977292 intergenic not near genes chr2L 9980859 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-229_75b 116 chr2L 10095631 10095660 chr2L 10095711 10095737 8 80 0.0 1.0 0.5 5.3 106 chr2L 10095631 intron CG44153 - chr2L 10095684 intron CG44153 - chr2L 10095737 intron CG44153 - chr2L_8_10095001 chr2L_10095001 RAL-229_75b 117 chr2L 10149619 10149633 chr2L 10149698 10149712 5 77 0.0 1.0 0.5 3.3 93 chr2L 10149619 intron,intron CG44153 -,CG4839 + chr2L 10149666 intron,intron CG44153 -,CG4839 + chr2L 10149712 intron,intron CG44153 -,CG4839 + chr2L_5_10145001 chr2L_10145001 RAL-229_75b 118 chr2L 10153204 10153237 chr2L 10153283 10153316 6 75 1.0 0.5 0.8 3.3 112 chr2L 10153204 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_6_10150001 chr2L_10150001 RAL-229_75b 119 chr2L 10156331 10156349 chr2L 10163790 10163819 blood 4 7467 4.5 1.5 3.0 1.0 7488 chr2L 10156331 intron,3` UTR CG44153 -,CG4839 + chr2L 10160075 intron CG44153 - chr2L 10163819 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-229_75b 120 chr2L 10258950 10258980 chr2L 10259023 10259055 12 74 2.0 3.0 2.5 3.4 105 chr2L 10258950 intron Pten - chr2L 10259002 intron Pten - chr2L 10259055 exon Pten - chr2L_12_10255001 chr2L_10255001 RAL-229_75b 121 chr2L 10490278 10490304 chr2L 10490360 10490385 6 78 1.5 1.0 1.2 2.7 107 chr2L 10490278 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490385 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_6_10490001 chr2L_10490001 RAL-229_75b 122 chr2L 10572702 10572730 chr2L 10572783 10572811 4 81 6.0 1.0 3.5 0.9 109 chr2L 10572702 intron Trim9 + chr2L 10572756 intron Trim9 + chr2L 10572811 intron Trim9 + chr2L_4_10570001 chr2L_10570001 RAL-229_75b 123 chr2L 10580684 10580714 chr2L 10580760 10580788 5 76 1.5 1.0 1.2 2.3 104 chr2L 10580684 intron Trim9 + chr2L 10580736 intron Trim9 + chr2L 10580788 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-229_75b 124 chr2L 10826172 10826201 chr2L 10826268 10826297 6 96 1.5 2.5 2.0 2.0 125 chr2L 10826172 intron Nos - chr2L 10826234 intron Nos - chr2L 10826297 intron Nos - chr2L_6_10825001 chr2L_10825001 RAL-229_75b 125 chr2L 10862857 10862875 chr2L 10864452 10864453 Rt1c 7 1605 1.0 1.5 1.2 3.2 1596 chr2L 10862857 3` UTR CR43807 - chr2L 10863655 intron CR43807 - chr2L 10864453 intron CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-229_75b 126 chr2L 10946949 10946972 chr2L 10956163 10956187 roo 5 9210 1.5 4.0 2.8 1.3 9238 chr2L 10946949 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956187 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-229_75b 127 chr2L 10956218 10956241 chr2L 10956311 10956333 4 89 1.5 2.0 1.8 1.4 115 chr2L 10956218 intron dpr2 - chr2L 10956276 intron dpr2 - chr2L 10956333 intron dpr2 - chr2L_4_10955001 chr2L_10955001 RAL-229_75b 128 chr2L 11169488 11169498 chr2L 11169623 11169633 4 135 2.5 3.5 3.0 1.0 145 chr2L 11169488 intron Ca-beta - chr2L 11169560 intron Ca-beta - chr2L 11169633 intron Ca-beta - chr2L_4_11165001 chr2L_11165001 RAL-229_75b 129 chr2L 11418661 11418687 chr2L 11418740 11418766 5 76 1.5 5.0 3.2 1.2 105 chr2L 11418661 intergenic not near genes chr2L 11418714 intergenic not near genes chr2L 11418766 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-229_75b 130 chr2L 11441210 11441216 chr2L 11441381 11441387 4 171 18.5 12.0 15.2 0.2 177 chr2L 11441210 intron salm - chr2L 11441298 intron salm - chr2L 11441387 intron salm - chr2L_4_11440001 chr2L_11440001 RAL-229_75b 131 chr2L 11458948 11458957 chr2L 11459064 11459069 4 115 6.5 1.0 3.8 0.8 121 chr2L 11458948 intergenic not near genes chr2L 11459008 intergenic not near genes chr2L 11459069 intergenic not near genes chr2L_4_11455001 chr2L_11455001 RAL-229_75b 132 chr2L 11458960 11458977 chr2L 11459062 11459093 4 112 3.0 1.0 2.0 1.3 133 chr2L 11458960 intergenic not near genes chr2L 11459026 intergenic not near genes chr2L 11459093 intergenic not near genes chr2L_4_11455001 chr2L_11455001 RAL-229_75b 133 chr2L 11477672 11477689 chr2L 11478073 11478093 5 401 2.0 2.0 2.0 1.7 421 chr2L 11477672 intergenic not near genes chr2L 11477882 intergenic not near genes chr2L 11478093 intergenic not near genes chr2L_5_11475001 chr2L_11475001 RAL-229_75b 134 chr2L 11563641 11563666 chr2L 11568845 11568870 copia 4 5203 3.5 2.5 3.0 1.0 5229 chr2L 11563641 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-229_75b 135 chr2L 11674693 11674723 chr2L 11675046 11675064 4 350 0.5 4.0 2.2 1.2 371 chr2L 11674693 intergenic not near genes chr2L 11674878 intergenic not near genes chr2L 11675064 intergenic not near genes chr2L_4_11670001 chr2L_11670001 RAL-229_75b 136 chr2L 11706659 11706679 chr2L 11706739 11706762 4 82 6.0 4.5 5.2 0.6 103 chr2L 11706659 intergenic not near genes chr2L 11706710 intergenic not near genes chr2L 11706762 intergenic not near genes chr2L_4_11705001 chr2L_11705001 RAL-229_75b 137 chr2L 11883511 11883536 chr2L 11883694 11883713 10 180 2.0 2.0 2.0 3.3 202 chr2L 11883511 intron Pde1c - chr2L 11883612 intron Pde1c - chr2L 11883713 intron Pde1c - chr2L_10_11880001 chr2L_11880001 RAL-229_75b 138 chr2L 11975778 11975810 chr2L 11975872 11975888 10 90 2.5 3.5 3.0 2.5 110 chr2L 11975778 intergenic not near genes chr2L 11975833 intergenic not near genes chr2L 11975888 intergenic not near genes chr2L_10_11975001 chr2L_11975001 RAL-229_75b 139 chr2L 12180838 12180871 chr2L 12180940 12180972 5 100 3.5 1.5 2.5 1.4 134 chr2L 12180838 intron aret + chr2L 12180905 intron aret + chr2L 12180972 intron aret + chr2L_5_12180001 chr2L_12180001 RAL-229_75b 140 chr2L 12188280 12188290 chr2L 12188348 12188365 4 74 0.0 4.0 2.0 1.3 85 chr2L 12188280 intron aret + chr2L 12188322 intron aret + chr2L 12188365 intron aret + chr2L_4_12185001 chr2L_12185001 RAL-229_75b 141 chr2L 12264634 12264661 chr2L 12264725 12264751 5 89 1.0 1.0 1.0 2.5 117 chr2L 12264634 intron aret + chr2L 12264692 intron aret + chr2L 12264751 intron aret + chr2L_5_12260001 chr2L_12260001 RAL-229_75b 142 chr2L 12364675 12364707 chr2L 12364793 12364825 9 117 2.0 2.0 2.0 3.0 150 chr2L 12364675 intron bru-2 + chr2L 12364750 intron bru-2 + chr2L 12364825 intron bru-2 + chr2L_9_12360001 chr2L_12360001 RAL-229_75b 143 chr2L 12487887 12487920 chr2L 12487968 12488001 5 81 2.0 3.5 2.8 1.3 114 chr2L 12487887 intron bun - chr2L 12487944 intron bun - chr2L 12488001 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-229_75b 144 chr2L 12488418 12488441 chr2L 12488504 12488525 5 85 0.5 2.0 1.2 2.3 107 chr2L 12488418 intron bun - chr2L 12488472 intron bun - chr2L 12488525 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-229_75b 145 chr2L 12518534 12518567 chr2L 12518793 12518825 5 255 1.0 1.5 1.2 2.3 291 chr2L 12518534 intron bun - chr2L 12518680 intron bun - chr2L 12518825 intron bun - chr2L_5_12515001 chr2L_12515001 RAL-229_75b 146 chr2L 12558319 12558352 chr2L 12565448 12565480 HMS-Beagle 6 7127 0.5 0.5 0.5 4.0 7161 chr2L 12558319 intergenic not near genes chr2L 12561900 intergenic not near genes chr2L 12565480 intergenic not near genes chr2L_6_12560001 chr2L_12560001 RAL-229_75b 147 chr2L 12739175 12739205 chr2L 12743954 12743985 Doc 6 4780 3.0 2.0 2.5 1.7 4810 chr2L 12739175 exon MRP + chr2L 12741580 intron MRP + chr2L 12743985 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-229_75b 148 chr2L 12791609 12791633 chr2L 12795284 12795308 F-element 4 3674 1.0 2.0 1.5 1.6 3699 chr2L 12791609 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-229_75b 149 chr2L 12861693 12861730 chr2L 12863160 12863192 hobo 9 1465 1.5 2.5 2.0 3.0 1499 chr2L 12861693 intergenic not near genes chr2L 12862442 intergenic not near genes chr2L 12863192 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-229_75b 150 chr2L 12933854 12933882 chr2L 12941321 12941349 blood 5 7467 1.5 4.5 3.0 1.2 7495 chr2L 12933854 intergenic not near genes chr2L 12937602 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-229_75b 151 chr2L 12956023 12956051 chr2L 12956104 12956131 5 78 2.5 2.5 2.5 1.4 108 chr2L 12956023 intergenic not near genes chr2L 12956077 intergenic not near genes chr2L 12956131 intergenic not near genes chr2L_5_12955001 chr2L_12955001 RAL-229_75b 152 chr2L 13045354 13045370 chr2L 13045434 13045447 4 78 1.0 2.0 1.5 1.6 93 chr2L 13045354 intron CG9932 - chr2L 13045400 intron CG9932 - chr2L 13045447 intron CG9932 - chr2L_4_13045001 chr2L_13045001 RAL-229_75b 153 chr2L 13047951 13047977 chr2L 13048076 13048102 5 124 1.0 3.5 2.2 1.6 151 chr2L 13047951 intron CG9932 - chr2L 13048026 intron CG9932 - chr2L 13048102 intron CG9932 - chr2L_5_13045001 chr2L_13045001 RAL-229_75b 154 chr2L 13069275 13069304 chr2L 13069394 13069414 7 117 2.0 2.5 2.2 2.2 139 chr2L 13069275 intergenic not near genes chr2L 13069344 intergenic not near genes chr2L 13069414 intergenic not near genes chr2L_7_13065001 chr2L_13065001 RAL-229_75b 155 chr2L 13077571 13077602 chr2L 13078165 13078196 8 594 1.5 1.0 1.2 3.6 625 chr2L 13077571 intergenic not near genes chr2L 13077884 intergenic not near genes chr2L 13078196 intergenic not near genes chr2L_8_13075001 chr2L_13075001 RAL-229_75b 156 chr2L 13152235 13152257 chr2L 13152311 13152333 11 75 2.0 1.5 1.8 3.9 98 chr2L 13152235 intergenic not near genes chr2L 13152284 intergenic not near genes chr2L 13152333 intergenic not near genes chr2L_11_13150001 chr2L_13150001 RAL-229_75b 157 chr2L 13204319 13204340 chr2L 13204418 13204431 5 96 1.0 1.5 1.2 2.3 112 chr2L 13204319 intron Pect + chr2L 13204375 intron Pect + chr2L 13204431 intron Pect + chr2L_5_13200001 chr2L_13200001 RAL-229_75b 158 chr2L 13231906 13231915 chr2L 13232017 13232022 5 110 3.0 7.0 5.0 0.8 116 chr2L 13231906 intergenic Prosalpha6T + chr2L 13231964 intergenic Prosalpha6T + chr2L 13232022 intergenic Prosalpha6T + chr2L_5_13230001 chr2L_13230001 RAL-229_75b 159 chr2L 13266379 13266411 chr2L 13266467 13266499 10 86 3.0 4.0 3.5 2.2 120 chr2L 13266379 intron CG44085 + chr2L 13266439 intron CG44085 + chr2L 13266499 intron CG44085 + chr2L_10_13265001 chr2L_13265001 RAL-229_75b 160 chr2L 13393675 13393702 chr2L 13393754 13393784 10 81 1.5 0.0 0.8 5.6 109 chr2L 13393675 exon CG7099 + chr2L 13393730 3` UTR,3` UTR CG7099 +,RpL24 - chr2L 13393784 3` UTR,3` UTR CG7099 +,RpL24 - chr2L_10_13390001 chr2L_13390001 RAL-229_75b 161 chr2L 13405646 13405679 chr2L 13410443 13410476 Doc 8 4796 3.0 1.5 2.2 2.5 4830 chr2L 13405646 exon CG7110 + chr2L 13408061 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-229_75b 162 chr2L 13473618 13473629 chr2L 13473695 13473706 5 77 0.0 1.0 0.5 3.3 88 chr2L 13473618 intron CG42784 + chr2L 13473662 intron CG42784 + chr2L 13473706 intron CG42784 + chr2L_5_13470001 chr2L_13470001 RAL-229_75b 163 chr2L 13481451 13481466 chr2L 13482058 13482073 jockey 5 606 3.0 2.0 2.5 1.4 622 chr2L 13481451 intron CG42784 + chr2L 13481762 intron CG42784 + chr2L 13482073 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-229_75b 164 chr2L 13628070 13628103 chr2L 13628152 13628175 14 81 2.0 2.0 2.0 4.7 105 chr2L 13628070 intron kuz + chr2L 13628122 intron kuz + chr2L 13628175 intron kuz + chr2L_14_13625001 chr2L_13625001 RAL-229_75b 165 chr2L 13713136 13713146 chr2L 13713293 13713303 5 157 3.5 3.5 3.5 1.1 167 chr2L 13713136 intron CG31814 - chr2L 13713220 intron CG31814 - chr2L 13713303 intron CG31814 - chr2L_5_13710001 chr2L_13710001 RAL-229_75b 166 chr2L 13752803 13752827 chr2L 13752921 13752945 4 118 1.0 2.0 1.5 1.6 142 chr2L 13752803 intron,intron CR44846 +,TM9SF4 + chr2L 13752874 intron,intron CR44846 +,TM9SF4 + chr2L 13752945 intron,intron CR44846 +,TM9SF4 + chr2L_4_13750001 chr2L_13750001 RAL-229_75b 167 chr2L 13761798 13761823 chr2L 13762909 13762934 Doc 4 1111 3.5 1.0 2.2 1.2 1136 chr2L 13761798 intron TM9SF4 + chr2L 13762366 intron TM9SF4 + chr2L 13762934 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-229_75b 168 chr2L 13800176 13800206 chr2L 13800280 13800310 7 102 1.0 2.5 1.8 2.5 134 chr2L 13800176 intergenic not near genes chr2L 13800243 intergenic not near genes chr2L 13800310 intergenic not near genes chr2L_7_13800001 chr2L_13800001 RAL-229_75b 169 chr2L 13853087 13853118 chr2L 13862233 13862267 roo 6 9149 2.0 3.0 2.5 1.7 9180 chr2L 13853087 intron CenG1A + chr2L 13857677 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-229_75b 170 chr2L 13918815 13918839 chr2L 13918901 13918926 5 86 2.0 1.0 1.5 2.0 111 chr2L 13918815 intron Ance-3 + chr2L 13918870 intron Ance-3 + chr2L 13918926 intron Ance-3 + chr2L_5_13915001 chr2L_13915001 RAL-229_75b 171 chr2L 14112740 14112772 chr2L 14112830 14112863 5 91 0.0 0.5 0.2 4.2 123 chr2L 14112740 intergenic not near genes chr2L 14112802 intergenic not near genes chr2L 14112863 intergenic not near genes chr2L_5_14110001 chr2L_14110001 RAL-229_75b 172 chr2L 14173868 14173886 chr2L 14173953 14173972 4 85 4.0 6.5 5.2 0.6 104 chr2L 14173868 intron CG43333 - chr2L 14173920 intron CG43333 - chr2L 14173972 intron CG43333 - chr2L_4_14170001 chr2L_14170001 RAL-229_75b 173 chr2L 14246294 14246313 chr2L 14246372 14246391 4 78 0.0 3.5 1.8 1.4 97 chr2L 14246294 intergenic not near genes chr2L 14246342 intergenic not near genes chr2L 14246391 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-229_75b 174 chr2L 14557256 14557270 chr2L 14557352 14557364 4 96 2.0 2.0 2.0 1.3 108 chr2L 14557256 intergenic not near genes chr2L 14557310 intergenic not near genes chr2L 14557364 intergenic not near genes chr2L_4_14555001 chr2L_14555001 RAL-229_75b 175 chr2L 14577924 14577955 chr2L 14578196 14578227 8 271 3.0 3.0 3.0 2.0 303 chr2L 14577924 intergenic not near genes chr2L 14578076 intergenic not near genes chr2L 14578227 intergenic not near genes chr2L_8_14575001 chr2L_14575001 RAL-229_75b 176 chr2L 14588385 14588403 chr2L 14588535 14588557 7 151 5.5 0.5 3.0 1.8 172 chr2L 14588385 intergenic CG42680 - chr2L 14588471 intergenic CG42680 - chr2L 14588557 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-229_75b 177 chr2L 14642571 14642603 chr2L 14651734 14651766 roo 11 9163 2.5 2.0 2.2 3.4 9195 chr2L 14642571 intron osp - chr2L 14647168 intron osp - chr2L 14651766 intron osp - chr2L_11_14645001 chr2L_14645001 RAL-229_75b 178 chr2L 14707211 14707240 chr2L 14707330 14707359 12 119 5.0 2.0 3.5 2.7 148 chr2L 14707211 intergenic not near genes chr2L 14707285 intergenic not near genes chr2L 14707359 intergenic not near genes chr2L_12_14705001 chr2L_14705001 RAL-229_75b 179 chr2L 14707589 14707617 chr2L 14708594 14708622 4 1005 0.0 11.0 5.5 0.6 1033 chr2L 14707589 intergenic not near genes chr2L 14708106 intergenic not near genes chr2L 14708622 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-229_75b 180 chr2L 14803882 14803906 chr2L 14809085 14809108 copia 8 5202 3.5 4.5 4.0 1.6 5226 chr2L 14803882 intergenic not near genes chr2L 14806495 intergenic not near genes chr2L 14809108 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-229_75b 181 chr2L 14889952 14889985 chr2L 14890376 14890410 jockey 6 424 3.5 2.0 2.8 1.6 458 chr2L 14889952 intergenic not near genes chr2L 14890181 intergenic not near genes chr2L 14890410 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-229_75b 182 chr2L 14923107 14923135 chr2L 14923187 14923207 4 78 2.0 2.5 2.2 1.2 100 chr2L 14923107 intron CG42313 - chr2L 14923157 intron CG42313 - chr2L 14923207 intron CG42313 - chr2L_4_14920001 chr2L_14920001 RAL-229_75b 183 chr2L 14984375 14984404 chr2L 14991977 14992006 opus 6 7598 3.0 2.0 2.5 1.7 7631 chr2L 14984375 intron mol - chr2L 14988190 intron mol - chr2L 14992006 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-229_75b 184 chr2L 15161254 15161262 chr2L 15161390 15161398 4 136 0.5 1.5 1.0 2.0 144 chr2L 15161254 intergenic CR44770 + chr2L 15161326 intergenic CR44770 + chr2L 15161398 intergenic CR44770 +,CG4168 - chr2L_4_15160001 chr2L_15160001 RAL-229_75b 185 chr2L 15223901 15223911 chr2L 15224003 15224021 5 108 1.5 1.5 1.5 2.0 120 chr2L 15223901 intergenic not near genes chr2L 15223961 intergenic not near genes chr2L 15224021 intergenic not near genes chr2L_5_15220001 chr2L_15220001 RAL-229_75b 186 chr2L 15226371 15226393 chr2L 15226447 15226469 4 75 3.5 1.5 2.5 1.1 98 chr2L 15226371 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226469 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-229_75b 187 chr2L 15627151 15627179 chr2L 15629058 15629080 6 1905 6.5 15.5 11.0 0.5 1929 chr2L 15627151 intergenic not near genes chr2L 15628116 intergenic not near genes chr2L 15629080 exon CG7631 + chr2L_6_15625001 chr2L_15625001 RAL-229_75b 188 chr2L 15626865 15626895 chr2L 15629509 15629538 4 2644 16.0 18.5 17.2 0.2 2673 chr2L 15626865 intergenic not near genes chr2L 15628202 intergenic CG7631 + chr2L 15629538 3` UTR CG7631 + chr2L_4_15625001 chr2L_15625001 RAL-229_75b 189 chr2L 15768674 15768684 chr2L 15769141 15769155 4 468 8.0 11.5 9.8 0.4 481 chr2L 15768674 3` UTR Ku80 - chr2L 15768914 exon Ku80 - chr2L 15769155 exon Ku80 - chr2L_4_15765001 chr2L_15765001 RAL-229_75b 190 chr2L 15823362 15823371 chr2L 15823437 15823442 4 74 1.0 2.0 1.5 1.6 80 chr2L 15823362 intergenic CR44601 - chr2L 15823402 intergenic CR44601 - chr2L 15823442 intergenic CR44601 - chr2L_4_15820001 chr2L_15820001 RAL-229_75b 191 chr2L 15945481 15945510 chr2L 15945622 15945651 5 140 2.5 3.0 2.8 1.3 170 chr2L 15945481 intron beat-Ib - chr2L 15945566 intron beat-Ib - chr2L 15945651 intron beat-Ib - chr2L_5_15945001 chr2L_15945001 RAL-229_75b 192 chr2L 15956029 15956057 chr2L 15957493 15957522 hobo 9 1466 1.5 3.0 2.2 2.8 1493 chr2L 15956029 intron beat-Ib - chr2L 15956776 intron beat-Ib - chr2L 15957522 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-229_75b 193 chr2L 16098922 16098953 chr2L 16099009 16099040 4 88 1.0 1.5 1.2 1.8 118 chr2L 16098922 intergenic not near genes chr2L 16098981 intergenic not near genes chr2L 16099040 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-229_75b 194 chr2L 16141170 16141186 chr2L 16146368 16146393 copia 5 5201 3.5 1.5 2.5 1.4 5223 chr2L 16141170 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146393 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-229_75b 195 chr2L 9084338 9084340 chr2L 16217660 16217660 4 7133321 8.0 16.0 12.0 0.3 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-229_75b 196 chr2L 16280254 16280288 chr2L 16281419 16281453 1360 10 1157 3.0 1.5 2.2 3.1 1199 chr2L 16280254 intron crp - chr2L 16280854 intron crp - chr2L 16281453 intron crp - chr2L_10_16280001 chr2L_16280001 RAL-229_75b 197 chr2L 16391803 16391829 chr2L 16391879 16391905 7 76 1.0 2.0 1.5 2.8 102 chr2L 16391803 intergenic not near genes chr2L 16391854 intergenic not near genes chr2L 16391905 intergenic not near genes chr2L_7_16390001 chr2L_16390001 RAL-229_75b 198 chr2L 16537323 16537344 chr2L 16537398 16537420 4 75 2.0 2.0 2.0 1.3 97 chr2L 16537323 intergenic not near genes chr2L 16537372 intergenic not near genes chr2L 16537420 intergenic not near genes chr2L_4_16535001 chr2L_16535001 RAL-229_75b 199 chr2L 16573633 16573647 chr2L 16573722 16573736 4 89 3.0 0.5 1.8 1.4 103 chr2L 16573633 intron CG42389 + chr2L 16573684 intron CG42389 + chr2L 16573736 intron CG42389 + chr2L_4_16570001 chr2L_16570001 RAL-229_75b 200 chr2L 16621622 16621648 chr2L 16621700 16621726 5 78 3.0 1.5 2.2 1.6 104 chr2L 16621622 intron CG42389 + chr2L 16621674 intron CG42389 + chr2L 16621726 intron CG42389 + chr2L_5_16620001 chr2L_16620001 RAL-229_75b 201 chr2L 16641425 16641438 chr2L 16641511 16641524 6 86 2.5 2.5 2.5 1.7 99 chr2L 16641425 intron CG42389 + chr2L 16641474 intron CG42389 + chr2L 16641524 intron CG42389 + chr2L_6_16640001 chr2L_16640001 RAL-229_75b 202 chr2L 16701453 16701481 chr2L 16701532 16701555 9 78 2.5 2.0 2.2 2.8 102 chr2L 16701453 intergenic not near genes chr2L 16701504 intergenic not near genes chr2L 16701555 intergenic not near genes chr2L_9_16700001 chr2L_16700001 RAL-229_75b 203 chr2L 16703863 16703891 chr2L 16703946 16703962 5 80 0.5 1.5 1.0 2.5 99 chr2L 16703863 intergenic CG31808 - chr2L 16703912 intergenic CG31808 - chr2L 16703962 intergenic CG31808 - chr2L_5_16700001 chr2L_16700001 RAL-229_75b 204 chr2L 16949631 16949647 chr2L 16949707 16949731 4 82 0.0 1.5 0.8 2.2 100 chr2L 16949631 intron CR44393 - chr2L 16949681 intron CR44393 - chr2L 16949731 intron CR44393 - chr2L_4_16945001 chr2L_16945001 RAL-229_75b 205 chr2L 16971471 16971505 chr2L 16971548 16971582 9 77 1.5 1.0 1.2 4.1 111 chr2L 16971471 intergenic not near genes chr2L 16971526 intergenic not near genes chr2L 16971582 intergenic not near genes chr2L_9_16970001 chr2L_16970001 RAL-229_75b 206 chr2L 17033922 17033938 chr2L 17034000 17034021 4 83 1.0 1.5 1.2 1.8 99 chr2L 17033922 intergenic not near genes chr2L 17033972 intergenic not near genes chr2L 17034021 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-229_75b 207 chr2L 17226102 17226130 chr2L 17226180 17226209 5 77 1.5 0.5 1.0 2.5 107 chr2L 17226102 intron beat-IIIc - chr2L 17226156 intron beat-IIIc - chr2L 17226209 intron beat-IIIc - chr2L_5_17225001 chr2L_17225001 RAL-229_75b 208 chr2L 17273203 17273222 chr2L 17277986 17278005 F-element 6 4783 4.0 1.5 2.8 1.6 4802 chr2L 17273203 intergenic not near genes chr2L 17275604 intergenic not near genes chr2L 17278005 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-229_75b 209 chr2L 17300399 17300425 chr2L 17300489 17300515 6 86 0.5 1.5 1.0 3.0 116 chr2L 17300399 intergenic not near genes chr2L 17300457 intergenic not near genes chr2L 17300515 intergenic not near genes chr2L_6_17300001 chr2L_17300001 RAL-229_75b 210 chr2L 17327914 17327928 chr2L 17327999 17328013 5 85 2.0 3.5 2.8 1.3 99 chr2L 17327914 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328013 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-229_75b 211 chr2L 17517857 17517876 chr2L 17517938 17517959 5 82 2.5 1.5 2.0 1.7 102 chr2L 17517857 intron Dhc36C + chr2L 17517908 intron Dhc36C + chr2L 17517959 intron Dhc36C + chr2L_5_17515001 chr2L_17515001 RAL-229_75b 212 chr2L 17741976 17741989 chr2L 17742052 17742064 4 75 1.5 3.5 2.5 1.1 88 chr2L 17741976 intron CadN - chr2L 17742020 intron CadN - chr2L 17742064 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-229_75b 213 chr2L 17747997 17748022 chr2L 17748074 17748099 4 76 1.0 1.0 1.0 2.0 102 chr2L 17747997 intron CadN - chr2L 17748048 intron CadN - chr2L 17748099 intron CadN - chr2L_4_17745001 chr2L_17745001 RAL-229_75b 214 chr2L 17819937 17819955 chr2L 17825126 17825158 copia 4 5200 0.5 1.5 1.0 2.0 5221 chr2L 17819937 intron CadN2 - chr2L 17822548 intron CadN2 - chr2L 17825158 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-229_75b 215 chr2L 17879999 17880022 chr2L 17880084 17880109 5 85 2.0 1.5 1.8 1.8 110 chr2L 17879999 intergenic not near genes chr2L 17880054 intergenic not near genes chr2L 17880109 intergenic not near genes chr2L_5_17880001 chr2L_17880001 RAL-229_75b 216 chr2L 17891476 17891488 chr2L 17891554 17891566 5 77 2.0 3.0 2.5 1.4 90 chr2L 17891476 intergenic not near genes chr2L 17891521 intergenic not near genes chr2L 17891566 intergenic not near genes chr2L_5_17890001 chr2L_17890001 RAL-229_75b 217 chr2L 17951951 17951974 chr2L 17953418 17953441 hobo 5 1467 1.5 0.0 0.8 2.8 1490 chr2L 17951951 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953441 intergenic not near genes chr2L_5_17950001 chr2L_17950001 RAL-229_75b 218 chr2L 18051879 18051904 chr2L 18061025 18061050 roo 5 9146 4.5 2.5 3.5 1.1 9171 chr2L 18051879 intron rdo + chr2L 18056464 intron rdo + chr2L 18061050 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-229_75b 219 chr2L 18111241 18111251 chr2L 18111332 18111342 6 90 4.0 5.0 4.5 1.1 101 chr2L 18111241 intergenic not near genes chr2L 18111292 intergenic not near genes chr2L 18111342 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-229_75b 220 chr2L 18130466 18130493 chr2L 18130556 18130584 8 91 0.0 1.0 0.5 5.3 118 chr2L 18130466 3` UTR kel - chr2L 18130525 3` UTR kel - chr2L 18130584 3` UTR kel - chr2L_8_18130001 chr2L_18130001 RAL-229_75b 221 chr2L 18243379 18243397 chr2L 18243456 18243474 4 76 1.0 3.0 2.0 1.3 95 chr2L 18243379 intron CG42750 - chr2L 18243426 intron CG42750 - chr2L 18243474 intron CG42750 - chr2L_4_18240001 chr2L_18240001 RAL-229_75b 222 chr2L 18306789 18306794 chr2L 18307146 18307151 4 356 1.5 4.5 3.0 1.0 362 chr2L 18306789 intergenic not near genes chr2L 18306970 intergenic not near genes chr2L 18307151 intergenic not near genes chr2L_4_18305001 chr2L_18305001 RAL-229_75b 223 chr2L 18315258 18315278 chr2L 18315333 18315350 9 78 1.5 0.5 1.0 4.5 92 chr2L 18315258 intergenic not near genes chr2L 18315304 intergenic not near genes chr2L 18315350 intergenic not near genes chr2L_9_18315001 chr2L_18315001 RAL-229_75b 224 chr2L 18406418 18406428 chr2L 18406488 18406521 4 83 1.5 3.0 2.2 1.2 103 chr2L 18406418 intergenic not near genes chr2L 18406470 intergenic not near genes chr2L 18406521 intergenic not near genes chr2L_4_18405001 chr2L_18405001 RAL-229_75b 225 chr2L 18419147 18419158 chr2L 18419243 18419263 4 103 2.5 1.5 2.0 1.3 116 chr2L 18419147 intergenic not near genes chr2L 18419205 intergenic not near genes chr2L 18419263 intergenic not near genes chr2L_4_18415001 chr2L_18415001 RAL-229_75b 226 chr2L 18552063 18552088 chr2L 18552158 18552183 4 94 1.0 1.5 1.2 1.8 120 chr2L 18552063 intron Pde11 - chr2L 18552123 intron Pde11 - chr2L 18552183 intron Pde11 - chr2L_4_18550001 chr2L_18550001 RAL-229_75b 227 chr2L 18898397 18898426 chr2L 18898479 18898508 6 82 2.0 1.5 1.8 2.1 111 chr2L 18898397 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_6_18895001 chr2L_18895001 RAL-229_75b 228 chr2L 19147371 19147403 chr2L 19154404 19154438 297 4 7034 3.0 1.0 2.0 1.3 7067 chr2L 19147371 intron brat + chr2L 19150904 intron brat + chr2L 19154438 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-229_75b 229 chr2L 19189976 19189985 chr2L 19190128 19190139 6 154 1.0 4.0 2.5 1.7 163 chr2L 19189976 intergenic pigeon +,drl + chr2L 19190058 intergenic pigeon +,drl + chr2L 19190139 intergenic pigeon +,drl + chr2L_6_19190001 chr2L_19190001 RAL-229_75b 230 chr2L 19191789 19191813 chr2L 19191897 19191922 4 109 0.0 1.0 0.5 2.7 133 chr2L 19191789 intron drl + chr2L 19191856 intron drl + chr2L 19191922 intron drl + chr2L_4_19190001 chr2L_19190001 RAL-229_75b 231 chr2L 19232593 19232599 chr2L 19232810 19232818 4 218 5.0 1.5 3.2 1.0 225 chr2L 19232593 intergenic not near genes chr2L 19232706 intergenic not near genes chr2L 19232818 intergenic not near genes chr2L_4_19230001 chr2L_19230001 RAL-229_75b 232 chr2L 19246826 19246849 chr2L 19246907 19246926 6 79 3.0 1.5 2.2 1.9 100 chr2L 19246826 intergenic not near genes chr2L 19246876 intergenic not near genes chr2L 19246926 intergenic not near genes chr2L_6_19245001 chr2L_19245001 RAL-229_75b 233 chr2L 19345013 19345048 chr2L 19357221 19357257 blood 7 12207 2.0 1.0 1.5 2.8 12244 chr2L 19345013 intron dnt - chr2L 19351135 intron dnt - chr2L 19357257 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-229_75b 234 chr2L 19372984 19373003 chr2L 19373266 19373278 4 285 1.0 4.5 2.8 1.1 294 chr2L 19372984 intergenic CG17349 + chr2L 19373131 intergenic CG17349 + chr2L 19373278 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-229_75b 235 chr2L 19441066 19441073 chr2L 19441143 19441150 6 76 5.5 5.0 5.2 1.0 84 chr2L 19441066 intron CG10237 - chr2L 19441108 intron CG10237 - chr2L 19441150 intron CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-229_75b 236 chr2L 19441079 19441089 chr2L 19441142 19441166 6 74 3.0 4.0 3.5 1.3 87 chr2L 19441079 intron CG10237 - chr2L 19441122 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-229_75b 237 chr2L 19458385 19458409 chr2L 19458487 19458507 7 99 2.0 1.0 1.5 2.8 122 chr2L 19458385 intergenic not near genes chr2L 19458446 intergenic not near genes chr2L 19458507 intergenic not near genes chr2L_7_19455001 chr2L_19455001 RAL-229_75b 238 chr2L 19487216 19487235 chr2L 19487302 19487322 7 86 3.5 2.5 3.0 1.8 106 chr2L 19487216 intergenic CG13083 + chr2L 19487269 intergenic CG13083 + chr2L 19487322 intergenic CG13083 + chr2L_7_19485001 chr2L_19485001 RAL-229_75b 239 chr2L 19544602 19544621 chr2L 19544678 19544698 5 75 3.5 5.0 4.2 1.0 96 chr2L 19544602 exon ref(2)P + chr2L 19544650 exon ref(2)P + chr2L 19544698 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-229_75b 240 chr2L 19620103 19620122 chr2L 19621080 19621089 jockey 6 983 2.0 3.0 2.5 1.7 986 chr2L 19620103 intron Lar + chr2L 19620596 intron Lar + chr2L 19621089 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-229_75b 241 chr2L 19652573 19652604 chr2L 19674009 19674040 opus 7 21436 1.5 1.0 1.2 3.2 21467 chr2L 19652573 intron Lar + chr2L 19663306 intron Lar + chr2L 19674040 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-229_75b 242 chr2L 19737362 19737380 chr2L 19740831 19740848 1360 5 3468 2.0 1.0 1.5 2.0 3486 chr2L 19737362 intergenic Nf-YB + chr2L 19739105 intergenic not near genes chr2L 19740848 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-229_75b 243 chr2L 19963494 19963507 chr2L 19963573 19963576 4 76 0.0 3.0 1.5 1.6 82 chr2L 19963494 exon CG16772 + chr2L 19963535 exon CG16772 + chr2L 19963576 exon CG16772 + chr2L_4_19960001 chr2L_19960001 RAL-229_75b 244 chr2L 20085467 20085493 chr2L 20085559 20085585 7 92 2.5 3.0 2.8 1.8 118 chr2L 20085467 intron neb + chr2L 20085526 intron neb + chr2L 20085585 intron neb + chr2L_7_20085001 chr2L_20085001 RAL-229_75b 245 chr2L 20272113 20272128 chr2L 20282824 20282839 copia 6 10711 6.0 1.5 3.8 1.2 10726 chr2L 20272113 intergenic not near genes chr2L 20277476 intergenic not near genes chr2L 20282839 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-229_75b 246 chr2L 20294310 20294322 chr2L 20294399 20294411 5 89 0.5 3.0 1.8 1.8 101 chr2L 20294310 intergenic CG12617 + chr2L 20294360 intergenic CG12617 + chr2L 20294411 intergenic CG12617 + chr2L_5_20290001 chr2L_20290001 RAL-229_75b 247 chr2L 20310886 20310921 chr2L 20310965 20311000 5 75 2.0 5.0 3.5 1.1 114 chr2L 20310886 intergenic spir + chr2L 20310943 intergenic spir + chr2L 20311000 intergenic spir + chr2L_5_20310001 chr2L_20310001 RAL-229_75b 248 chr2L 20396805 20396828 chr2L 20396881 20396904 6 74 2.0 2.0 2.0 2.0 99 chr2L 20396805 intron CG10947 - chr2L 20396854 intron CG10947 - chr2L 20396904 intron CG10947 - chr2L_6_20395001 chr2L_20395001 RAL-229_75b 249 chr2L 20498691 20498706 chr2L 20498790 20498805 7 99 1.5 2.5 2.0 2.3 114 chr2L 20498691 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-229_75b 250 chr2L 20568666 20568687 chr2L 20569052 20569077 X-element 4 389 1.5 3.0 2.2 1.2 411 chr2L 20568666 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569077 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-229_75b 251 chr2L 20576221 20576247 chr2L 20583688 20583715 blood 10 7464 2.5 2.0 2.2 3.1 7494 chr2L 20576221 intergenic not near genes chr2L 20579968 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_10_20575001 chr2L_20575001 RAL-229_75b 252 chr2L 20818513 20818527 chr2L 20818593 20818608 5 80 3.5 2.5 3.0 1.2 95 chr2L 20818513 exon CheB38a - chr2L 20818560 intergenic CheB38a - chr2L 20818608 intergenic CheB38a - chr2L_5_20815001 chr2L_20815001 RAL-229_75b 253 chr2L 20835816 20835836 chr2L 20836530 20836552 Quasimodo 4 716 0.5 2.0 1.2 1.8 736 chr2L 20835816 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836552 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-229_75b 254 chr2L 20911034 20911055 chr2L 20911110 20911130 7 75 2.5 4.0 3.2 1.7 96 chr2L 20911034 intron,intron CG43739 -,sky - chr2L 20911082 intron,intron CG43739 -,sky - chr2L 20911130 intron,intron CG43739 -,sky - chr2L_7_20910001 chr2L_20910001 RAL-229_75b 255 chr2L 20946946 20946962 chr2L 20947033 20947048 4 86 2.0 2.0 2.0 1.3 102 chr2L 20946946 intergenic CR44606 - chr2L 20946997 intergenic CR44606 - chr2L 20947048 intergenic CR44606 - chr2L_4_20945001 chr2L_20945001 RAL-229_75b 256 chr2L 20976643 20976680 chr2L 20981458 20981489 X-element 9 4814 2.0 2.5 2.2 2.8 4846 chr2L 20976643 intron CG42238 - chr2L 20979066 intron CG42238 - chr2L 20981489 intron CG42238 - chr2L_9_20975001 chr2L_20975001 RAL-229_75b 257 chr2L 20984741 20984772 chr2L 20984829 20984846 7 88 0.5 0.5 0.5 4.7 105 chr2L 20984741 intron CG42238 - chr2L 20984794 intron CG42238 - chr2L 20984846 intron CG42238 - chr2L_7_20980001 chr2L_20980001 RAL-229_75b 258 chr2L 20991035 20991066 chr2L 20991113 20991144 9 77 2.5 2.5 2.5 2.6 109 chr2L 20991035 intron CG42238 - chr2L 20991090 intron CG42238 - chr2L 20991144 intron CG42238 - chr2L_9_20990001 chr2L_20990001 RAL-229_75b 259 chr2L 21020271 21020307 chr2L 21023948 21023984 NOF 10 3675 3.0 1.5 2.2 3.1 3713 chr2L 21020271 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_10_21020001 chr2L_21020001 RAL-229_75b 260 chr2L 21041134 21041168 chr2L 21049395 21049429 Tirant 6 8259 1.5 1.0 1.2 2.7 8295 chr2L 21041134 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-229_75b 261 chr2L 21088935 21088950 chr2L 21089015 21089033 4 82 0.5 1.5 1.0 2.0 98 chr2L 21088935 intergenic ppk13 -,CG9259 + chr2L 21088984 intergenic ppk13 -,CG9259 + chr2L 21089033 intergenic ppk13 -,CG9259 + chr2L_4_21085001 chr2L_21085001 RAL-229_75b 262 chr2L 21755492 21755523 chr2L 21755616 21755647 6 124 0.5 3.0 1.8 2.1 155 chr2L 21755492 intron step - chr2L 21755570 intron step - chr2L 21755647 intron step - chr2L_6_21755001 chr2L_21755001 RAL-229_75b 263 chr2L 21814882 21814914 chr2L 21814980 21815009 12 95 0.5 4.5 2.5 3.4 127 chr2L 21814882 intergenic not near genes chr2L 21814946 intergenic not near genes chr2L 21815009 intergenic not near genes chr2L_12_21810001 chr2L_21810001 RAL-229_75b 264 chr2L 21819330 21819349 chr2L 21819418 21819437 5 87 3.5 2.0 2.8 1.3 107 chr2L 21819330 intergenic CR44786 + chr2L 21819384 intergenic CR44786 + chr2L 21819437 intergenic CR44786 + chr2L_5_21815001 chr2L_21815001 RAL-229_75b 265 chr2L 21836407 21836423 chr2L 21836490 21836513 5 88 1.5 2.5 2.0 1.7 106 chr2L 21836407 3` UTR tsh + chr2L 21836460 3` UTR tsh + chr2L 21836513 3` UTR tsh + chr2L_5_21835001 chr2L_21835001 RAL-229_75b 266 chr2L 21966995 21967031 chr2L 21967122 21967158 7 127 0.5 2.5 1.5 2.8 163 chr2L 21966995 intergenic not near genes chr2L 21967076 intergenic not near genes chr2L 21967158 intergenic not near genes chr2L_7_21965001 chr2L_21965001 RAL-229_75b 267 chr2L 21981686 21981712 chr2L 21990848 21990876 roo 12 9164 1.0 4.5 2.8 3.2 9190 chr2L 21981686 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_12_21985001 chr2L_21985001 RAL-229_75b 268 chr2L 22025827 22025851 chr2L 22025907 22025929 4 78 0.5 1.0 0.8 2.2 102 chr2L 22025827 intergenic tio + chr2L 22025878 intergenic tio + chr2L 22025929 intergenic tio + chr2L_4_22025001 chr2L_22025001 RAL-229_75b 269 chr2L 22983942 22983972 chr2L 22984018 22984048 6 76 1.5 1.0 1.2 2.7 106 chr2L 22983942 intron cta + chr2L 22983995 intron cta + chr2L 22984048 intron cta + chr2L_6_22980001 chr2L_22980001 RAL-229_75b 270 chr2R 2498982 2499014 chr2R 2508129 2508159 roo 6 9142 5.0 2.0 3.5 1.3 9177 chr2R 2498982 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508159 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-229_75b 271 chr2R 3291934 3292101 chr2R 3915103 3915262 4 623165 8.0 11.0 9.5 0.4 623328 chr2R 3291934 intergenic not near genes chr2R 3603598 intergenic not near genes chr2R 3915262 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-229_75b 272 chr2R 4186923 4186945 chr2R 4187271 4187293 4 348 1.0 0.5 0.8 2.2 370 chr2R 4186923 3` UTR CG40127 - chr2R 4187108 3` UTR CG40127 - chr2R 4187293 3` UTR CG40127 - chr2R_4_4185001 chr2R_4185001 RAL-229_75b 273 chr2R 4622953 4622984 chr2R 4624111 4624138 1360 5 1155 3.0 2.0 2.5 1.4 1185 chr2R 4622953 intergenic CR44101 - chr2R 4623546 intergenic not near genes chr2R 4624138 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-229_75b 274 chr2R 4624643 4624669 chr2R 4626548 4626566 Bica 6 1903 3.5 2.5 3.0 1.5 1923 chr2R 4624643 intergenic not near genes chr2R 4625604 intergenic not near genes chr2R 4626566 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-229_75b 275 chr2R 5019277 5019298 chr2R 5019363 5019384 6 86 2.5 2.0 2.2 1.9 107 chr2R 5019277 intron Ir41a + chr2R 5019330 intron Ir41a + chr2R 5019384 intron Ir41a + chr2R_6_5015001 chr2R_5015001 RAL-229_75b 276 chr2R 5080793 5080819 chr2R 5080884 5080910 10 90 0.5 2.0 1.2 4.5 117 chr2R 5080793 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080910 intergenic not near genes chr2R_10_5080001 chr2R_5080001 RAL-229_75b 277 chr2R 5209783 5209811 chr2R 5210313 5210333 6 531 2.0 0.0 1.0 3.0 550 chr2R 5209783 intron Nipped-A - chr2R 5210058 intron Nipped-A - chr2R 5210333 intron Nipped-A - chr2R_6_5210001 chr2R_5210001 RAL-229_75b 278 chr2R 5267603 5267627 chr2R 5267690 5267712 7 81 3.0 3.0 3.0 1.8 109 chr2R 5267603 intron d4 + chr2R 5267658 intron d4 + chr2R 5267712 intron d4 + chr2R_7_5265001 chr2R_5265001 RAL-229_75b 279 chr2R 5472382 5472389 chr2R 5472462 5472483 5 91 0.0 2.5 1.2 2.3 101 chr2R 5472382 intron CG30440 - chr2R 5472432 intron CG30440 - chr2R 5472483 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-229_75b 280 chr2R 5491661 5491698 chr2R 5491754 5491791 10 92 1.0 1.5 1.2 4.5 130 chr2R 5491661 intron CG30440 - chr2R 5491726 intron CG30440 - chr2R 5491791 intron CG30440 - chr2R_10_5490001 chr2R_5490001 RAL-229_75b 281 chr2R 5790475 5790497 chr2R 5790560 5790582 4 84 0.5 0.0 0.2 3.3 107 chr2R 5790475 intergenic not near genes chr2R 5790528 intergenic not near genes chr2R 5790582 intergenic not near genes chr2R_4_5790001 chr2R_5790001 RAL-229_75b 282 chr2R 5869280 5869299 chr2R 5874355 5874375 flea 9 5075 6.0 5.5 5.8 1.3 5095 chr2R 5869280 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874375 intergenic not near genes chr2R_9_5870001 chr2R_5870001 RAL-229_75b 283 chr2R 6088369 6088383 chr2R 6088462 6088476 5 93 0.0 1.5 0.8 2.8 107 chr2R 6088369 intergenic not near genes chr2R 6088422 intergenic not near genes chr2R 6088476 intergenic not near genes chr2R_5_6085001 chr2R_6085001 RAL-229_75b 284 chr2R 6530548 6530555 chr2R 6530680 6530685 4 132 4.0 0.0 2.0 1.3 137 chr2R 6530548 intron jing + chr2R 6530616 intron jing + chr2R 6530685 intron jing + chr2R_4_6530001 chr2R_6530001 RAL-229_75b 285 chr2R 6538380 6538406 chr2R 6538458 6538484 8 78 3.5 4.0 3.8 1.7 104 chr2R 6538380 intron jing + chr2R 6538432 intron jing + chr2R 6538484 intron jing + chr2R_8_6535001 chr2R_6535001 RAL-229_75b 286 chr2R 6633203 6633232 chr2R 6633278 6633308 5 76 1.5 1.5 1.5 2.0 105 chr2R 6633203 intergenic Vha16-1 -,Trap1 - chr2R 6633256 intergenic Vha16-1 -,Trap1 - chr2R 6633308 intergenic Vha16-1 -,Trap1 - chr2R_5_6630001 chr2R_6630001 RAL-229_75b 287 chr2R 7235837 7235853 chr2R 7240910 7240928 jockey 4 5083 1.5 2.0 1.8 1.4 5091 chr2R 7235837 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240928 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-229_75b 288 chr2R 7417909 7418151 chr2R 7417994 7418230 6 82 2.0 2.5 2.2 1.9 321 chr2R 7417909 intergenic not near genes chr2R 7418070 intergenic not near genes chr2R 7418230 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-229_75b 289 chr2R 7434892 7434915 chr2R 7439193 7439216 Juan 6 4301 1.0 3.5 2.2 1.9 4324 chr2R 7434892 intergenic so + chr2R 7437054 intergenic not near genes chr2R 7439216 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-229_75b 290 chr2R 7459287 7459302 chr2R 7459374 7459390 4 88 3.5 0.0 1.8 1.4 103 chr2R 7459287 intergenic CG11141 -,Inos - chr2R 7459338 intergenic CG11141 -,Inos - chr2R 7459390 intergenic CG11141 - chr2R_4_7455001 chr2R_7455001 RAL-229_75b 291 chr2R 7608416 7608436 chr2R 7613611 7613639 I-element 4 5201 1.0 2.5 1.8 1.4 5223 chr2R 7608416 intron CG1358 - chr2R 7611028 intron CG1358 - chr2R 7613639 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-229_75b 292 chr2R 7616297 7616308 chr2R 7616387 7616398 5 90 3.0 0.0 1.5 2.0 101 chr2R 7616297 intron CG1358 - chr2R 7616348 intron CG1358 - chr2R 7616398 intron CG1358 - chr2R_5_7615001 chr2R_7615001 RAL-229_75b 293 chr2R 7642868 7642880 chr2R 7642948 7642960 7 79 4.5 2.5 3.5 1.6 92 chr2R 7642868 intron CG43340 + chr2R 7642914 intron CG43340 + chr2R 7642960 intron CG43340 + chr2R_7_7640001 chr2R_7640001 RAL-229_75b 294 chr2R 7815674 7815698 chr2R 7822143 7822167 Burdock 6 6467 2.0 4.0 3.0 1.5 6493 chr2R 7815674 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822167 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-229_75b 295 chr2R 7942933 7942945 chr2R 7943190 7943202 4 254 1.0 2.5 1.8 1.4 269 chr2R 7942933 intron CG14764 - chr2R 7943068 intron CG14764 - chr2R 7943202 intron CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-229_75b 296 chr2R 8015656 8015680 chr2R 8017673 8017703 4 2022 0.5 2.5 1.5 1.6 2047 chr2R 8015656 intergenic mir-4981 + chr2R 8016680 intergenic not near genes chr2R 8017703 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-229_75b 297 chr2R 8089255 8089285 chr2R 8089341 8089371 5 83 1.0 0.0 0.5 3.3 116 chr2R 8089255 3` UTR sut2 + chr2R 8089313 intergenic sut2 +,sut3 + chr2R 8089371 intergenic sut2 +,sut3 + chr2R_5_8085001 chr2R_8085001 RAL-229_75b 298 chr2R 8185638 8185670 chr2R 8185723 8185756 6 88 3.0 3.5 3.2 1.4 118 chr2R 8185638 intron LRP1 + chr2R 8185697 intron LRP1 + chr2R 8185756 intron LRP1 + chr2R_6_8185001 chr2R_8185001 RAL-229_75b 299 chr2R 8244446 8244465 chr2R 8244558 8244583 7 117 3.0 1.0 2.0 2.3 137 chr2R 8244446 intergenic not near genes chr2R 8244514 intergenic not near genes chr2R 8244583 intergenic not near genes chr2R_7_8240001 chr2R_8240001 RAL-229_75b 300 chr2R 8249560 8249588 chr2R 8249642 8249670 8 82 3.5 1.0 2.2 2.5 110 chr2R 8249560 5` UTR CG44439 - chr2R 8249615 intergenic CG44439 - chr2R 8249670 intergenic CG44439 - chr2R_8_8245001 chr2R_8245001 RAL-229_75b 301 chr2R 8411391 8411419 chr2R 8412713 8412745 6 1324 10.5 12.5 11.5 0.5 1354 chr2R 8411391 intron CG2121 - chr2R 8412068 intergenic CG2121 - chr2R 8412745 intergenic not near genes chr2R_6_8410001 chr2R_8410001 RAL-229_75b 302 chr2R 8411134 8411164 chr2R 8413304 8413334 6 2173 15.0 14.5 14.8 0.4 2200 chr2R 8411134 intron CG2121 - chr2R 8412234 intergenic CG2121 - chr2R 8413334 intergenic not near genes chr2R_6_8410001 chr2R_8410001 RAL-229_75b 303 chr2R 8566032 8566059 chr2R 8566984 8567011 1360 8 952 3.0 2.0 2.5 2.3 979 chr2R 8566032 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567011 5` UTR Cyp6a14 - chr2R_8_8565001 chr2R_8565001 RAL-229_75b 304 chr2R 8589772 8589795 chr2R 8589880 8589893 6 110 3.0 5.0 4.0 1.2 121 chr2R 8589772 intergenic not near genes chr2R 8589832 intergenic not near genes chr2R 8589893 intergenic not near genes chr2R_6_8585001 chr2R_8585001 RAL-229_75b 305 chr2R 8656472 8656501 chr2R 8656589 8656619 10 116 2.0 1.5 1.8 3.6 147 chr2R 8656472 intron ptc + chr2R 8656546 intron ptc + chr2R 8656619 intron ptc + chr2R_10_8655001 chr2R_8655001 RAL-229_75b 306 chr2R 8666720 8666743 chr2R 8670367 8670391 7 3648 17.5 22.0 19.8 0.3 3671 chr2R 8666720 intron Acsl + chr2R 8668556 intron Acsl + chr2R 8670391 intron Acsl + chr2R_7_8665001 chr2R_8665001 RAL-229_75b 307 chr2R 8714711 8714720 chr2R 8714777 8714798 4 78 0.0 1.5 0.8 2.2 87 chr2R 8714711 3` UTR PGRP-SC1b + chr2R 8714754 3` UTR PGRP-SC1b + chr2R 8714798 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-229_75b 308 chr2R 8759772 8759790 chr2R 8759838 8759869 5 70 0.0 0.5 0.2 4.2 97 chr2R 8759772 intergenic CG8740 + chr2R 8759820 intergenic CG8740 + chr2R 8759869 intergenic CG8740 + chr2R_5_8755001 chr2R_8755001 RAL-229_75b 309 chr2R 8833428 8833451 chr2R 8833509 8833531 10 81 2.5 1.5 2.0 3.3 103 chr2R 8833428 intron sns + chr2R 8833480 intron sns + chr2R 8833531 intron sns + chr2R_10_8830001 chr2R_8830001 RAL-229_75b 310 chr2R 8850636 8850658 chr2R 8850991 8851013 4 355 2.0 2.0 2.0 1.3 377 chr2R 8850636 intron sns + chr2R 8850824 intron sns + chr2R 8851013 intron sns + chr2R_4_8850001 chr2R_8850001 RAL-229_75b 311 chr2R 9065920 9065947 chr2R 9066002 9066027 6 82 3.0 3.5 3.2 1.4 107 chr2R 9065920 intron ana + chr2R 9065974 intron ana + chr2R 9066027 intron ana + chr2R_6_9065001 chr2R_9065001 RAL-229_75b 312 chr2R 9151302 9151332 chr2R 9157772 9157802 Burdock 7 6470 2.0 0.5 1.2 3.2 6500 chr2R 9151302 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157802 intergenic CG8008 - chr2R_7_9150001 chr2R_9150001 RAL-229_75b 313 chr2R 9212696 9212721 chr2R 9213182 9213182 roo 7 480 1.0 3.0 2.0 2.3 486 chr2R 9212696 intergenic CR45309 + chr2R 9212939 intergenic CR45309 + chr2R 9213182 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-229_75b 314 chr2R 9368129 9368151 chr2R 9368203 9368227 7 75 2.5 0.0 1.2 3.2 98 chr2R 9368129 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368227 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-229_75b 315 chr2R 9561837 9561843 chr2R 9561924 9561931 4 88 0.5 4.0 2.2 1.2 94 chr2R 9561837 3` UTR,intron CR45281 -,CG1809 + chr2R 9561884 3` UTR,intron CR45281 -,CG1809 + chr2R 9561931 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-229_75b 316 chr2R 9672317 9672344 chr2R 9672402 9672429 6 85 2.0 1.0 1.5 2.4 112 chr2R 9672317 intron Mmp2 - chr2R 9672373 intron Mmp2 - chr2R 9672429 intron Mmp2 - chr2R_6_9670001 chr2R_9670001 RAL-229_75b 317 chr2R 9859195 9859221 chr2R 9861545 9861579 6 2353 11.0 7.5 9.2 0.6 2384 chr2R 9859195 intron CG1516 - chr2R 9860387 intron CG1516 - chr2R 9861579 intergenic CR44293 +,CG1516 - chr2R_6_9860001 chr2R_9860001 RAL-229_75b 318 chr2R 9871048 9871073 chr2R 9871534 9871542 roo 4 482 0.0 2.0 1.0 2.0 494 chr2R 9871048 intron cbx - chr2R 9871295 intron cbx - chr2R 9871542 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-229_75b 319 chr2R 10005855 10005881 chr2R 10007018 10007046 1360 5 1164 3.5 1.5 2.5 1.4 1191 chr2R 10005855 intron Pka-R2 - chr2R 10006450 intron Pka-R2 - chr2R 10007046 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-229_75b 320 chr2R 10132201 10132215 chr2R 10132281 10132294 5 80 1.0 4.5 2.8 1.3 93 chr2R 10132201 intron gem + chr2R 10132248 intron gem + chr2R 10132294 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-229_75b 321 chr2R 10147647 10147658 chr2R 10147724 10147741 4 82 1.5 1.0 1.2 1.8 94 chr2R 10147647 exon KCNQ - chr2R 10147694 intron KCNQ - chr2R 10147741 intron KCNQ - chr2R_4_10145001 chr2R_10145001 RAL-229_75b 322 chr2R 10171123 10171142 chr2R 10171207 10171226 8 82 1.0 4.5 2.8 2.1 103 chr2R 10171123 intron KCNQ - chr2R 10171174 intron KCNQ - chr2R 10171226 intron KCNQ - chr2R_8_10170001 chr2R_10170001 RAL-229_75b 323 chr2R 10190442 10190467 chr2R 10190525 10190536 7 81 1.0 1.5 1.2 3.2 94 chr2R 10190442 intron KCNQ - chr2R 10190489 intron KCNQ - chr2R 10190536 intron KCNQ - chr2R_7_10190001 chr2R_10190001 RAL-229_75b 324 chr2R 10203648 10203660 chr2R 10203726 10203745 5 84 2.5 0.0 1.2 2.3 97 chr2R 10203648 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203745 intergenic not near genes chr2R_5_10200001 chr2R_10200001 RAL-229_75b 325 chr2R 10216195 10216218 chr2R 10216273 10216296 7 76 1.0 3.0 2.0 2.3 101 chr2R 10216195 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216296 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-229_75b 326 chr2R 10318515 10318530 chr2R 10318601 10318616 4 86 2.0 1.5 1.8 1.4 101 chr2R 10318515 intron Ndg + chr2R 10318566 intron Ndg + chr2R 10318616 intron Ndg + chr2R_4_10315001 chr2R_10315001 RAL-229_75b 327 chr2R 10319718 10319742 chr2R 10319807 10319834 5 91 2.5 2.0 2.2 1.6 116 chr2R 10319718 intron Ndg + chr2R 10319776 intron Ndg + chr2R 10319834 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-229_75b 328 chr2R 10352680 10352700 chr2R 10352757 10352777 6 77 0.5 2.0 1.2 2.7 97 chr2R 10352680 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352777 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_6_10350001 chr2R_10350001 RAL-229_75b 329 chr2R 10411817 10411833 chr2R 10411899 10411915 5 82 1.0 2.5 1.8 1.8 98 chr2R 10411817 intron CG42732 - chr2R 10411866 intron CG42732 - chr2R 10411915 intron CG42732 - chr2R_5_10410001 chr2R_10410001 RAL-229_75b 330 chr2R 10419648 10419657 chr2R 10425322 10425333 4 5675 0.5 14.5 7.5 0.5 5685 chr2R 10419648 exon Prx2540-2 + chr2R 10422490 intron,exon CG11825 -,CG33474 + chr2R 10425333 exon Prx2540-1 + chr2R_4_10420001 chr2R_10420001 RAL-229_75b 331 chr2R 10469026 10469054 chr2R 10469152 10469180 13 125 1.5 5.0 3.2 3.1 154 chr2R 10469026 intron CG11777 + chr2R 10469103 intron CG11777 + chr2R 10469180 intron CG11777 + chr2R_13_10465001 chr2R_10465001 RAL-229_75b 332 chr2R 10658059 10658088 chr2R 10658151 10658180 6 92 0.5 2.0 1.2 2.7 121 chr2R 10658059 intergenic not near genes chr2R 10658120 intergenic not near genes chr2R 10658180 intergenic not near genes chr2R_6_10655001 chr2R_10655001 RAL-229_75b 333 chr2R 10658935 10658952 chr2R 10659020 10659032 5 81 2.5 0.5 1.5 2.0 97 chr2R 10658935 intergenic not near genes chr2R 10658984 intergenic not near genes chr2R 10659032 intergenic not near genes chr2R_5_10655001 chr2R_10655001 RAL-229_75b 334 chr2R 10758803 10758827 chr2R 10758894 10758926 5 91 1.5 3.0 2.2 1.6 123 chr2R 10758803 intron CG33144 - chr2R 10758864 intron CG33144 - chr2R 10758926 intron CG33144 - chr2R_5_10755001 chr2R_10755001 RAL-229_75b 335 chr2R 10761559 10761579 chr2R 10761713 10761732 6 153 2.0 1.0 1.5 2.4 173 chr2R 10761559 intron,5` UTR CG33144 -,CR43605 + chr2R 10761646 intron,5` UTR CG33144 -,CR43605 + chr2R 10761732 intron CG33144 - chr2R_6_10760001 chr2R_10760001 RAL-229_75b 336 chr2R 10790144 10790177 chr2R 10790231 10790263 12 85 0.5 1.5 1.0 6.0 119 chr2R 10790144 intron CG33144 - chr2R 10790204 intron CG33144 - chr2R 10790263 intron CG33144 - chr2R_12_10790001 chr2R_10790001 RAL-229_75b 337 chr2R 11009819 11009845 chr2R 11018993 11019012 roo 6 9173 1.0 3.5 2.2 1.9 9193 chr2R 11009819 intron luna - chr2R 11014416 intron luna - chr2R 11019012 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-229_75b 338 chr2R 11019878 11019908 chr2R 11024944 11024966 jockey 7 5061 1.0 2.5 1.8 2.5 5088 chr2R 11019878 intron luna - chr2R 11022422 intron luna - chr2R 11024966 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-229_75b 339 chr2R 11068490 11068520 chr2R 11068658 11068688 7 167 1.0 4.0 2.5 2.0 198 chr2R 11068490 intron luna - chr2R 11068589 intron luna - chr2R 11068688 intron luna - chr2R_7_11065001 chr2R_11065001 RAL-229_75b 340 chr2R 11179269 11179288 chr2R 11179355 11179374 5 85 2.0 3.5 2.8 1.3 105 chr2R 11179269 intron shn + chr2R 11179322 intron shn + chr2R 11179374 intron shn + chr2R_5_11175001 chr2R_11175001 RAL-229_75b 341 chr2R 11207813 11207847 chr2R 11208006 11208024 BS 13 191 5.5 3.5 4.5 2.4 211 chr2R 11207813 intron shn + chr2R 11207918 intron shn + chr2R 11208024 intron shn + chr2R_13_11205001 chr2R_11205001 RAL-229_75b 342 chr2R 11415520 11415541 chr2R 11418669 11418684 opus 5 3147 2.5 6.0 4.2 1.0 3164 chr2R 11415520 intron Drip - chr2R 11417102 intron Drip - chr2R 11418684 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-229_75b 343 chr2R 11472648 11472678 chr2R 11473845 11473875 pogo 6 1197 0.5 4.0 2.2 1.9 1227 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-229_75b 344 chr2R 11494610 11494631 chr2R 11494699 11494720 7 88 2.5 5.0 3.8 1.5 110 chr2R 11494610 intron inv + chr2R 11494665 intron inv + chr2R 11494720 intron inv + chr2R_7_11490001 chr2R_11490001 RAL-229_75b 345 chr2R 11516576 11516604 chr2R 11516712 11516736 6 134 2.0 1.5 1.8 2.1 160 chr2R 11516576 intergenic not near genes chr2R 11516656 intergenic not near genes chr2R 11516736 intergenic not near genes chr2R_6_11515001 chr2R_11515001 RAL-229_75b 346 chr2R 11665821 11665844 chr2R 11665900 11665932 5 81 0.5 2.0 1.2 2.3 111 chr2R 11665821 intron,intron Roc2 -,Tret1-1 + chr2R 11665876 intron,intron Roc2 -,Tret1-1 + chr2R 11665932 intron,intron Roc2 -,Tret1-1 + chr2R_5_11665001 chr2R_11665001 RAL-229_75b 347 chr2R 11675608 11675633 chr2R 11675690 11675715 9 81 2.5 4.0 3.2 2.1 107 chr2R 11675608 intron Roc2 - chr2R 11675662 intron Roc2 - chr2R 11675715 intron Roc2 - chr2R_9_11675001 chr2R_11675001 RAL-229_75b 348 chr2R 11817962 11817981 chr2R 11818060 11818079 5 97 0.5 2.0 1.2 2.3 117 chr2R 11817962 intergenic not near genes chr2R 11818020 intergenic not near genes chr2R 11818079 intergenic not near genes chr2R_5_11815001 chr2R_11815001 RAL-229_75b 349 chr2R 11822981 11823001 chr2R 11823058 11823077 4 76 0.5 3.5 2.0 1.3 96 chr2R 11822981 intergenic not near genes chr2R 11823029 intergenic not near genes chr2R 11823077 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-229_75b 350 chr2R 12187472 12187508 chr2R 12190098 12190124 14 2623 55.5 36.0 45.8 0.3 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_14_12185001 chr2R_12185001 RAL-229_75b 351 chr2R 12385349 12385378 chr2R 12385430 12385459 10 81 0.0 0.5 0.2 8.3 110 chr2R 12385349 intergenic not near genes chr2R 12385404 intergenic not near genes chr2R 12385459 intergenic not near genes chr2R_10_12385001 chr2R_12385001 RAL-229_75b 352 chr2R 12393376 12393396 chr2R 12395385 12395406 6 2010 18.0 20.0 19.0 0.3 2030 chr2R 12393376 intergenic Or49a + chr2R 12394391 exon Or49a + chr2R 12395406 5` UTR CG30048 + chr2R_6_12390001 chr2R_12390001 RAL-229_75b 353 chr2R 12481151 12481169 chr2R 12482941 12482972 roo 4 1791 1.5 2.5 2.0 1.3 1821 chr2R 12481151 exon Dh44-R2 + chr2R 12482062 intron Dh44-R2 + chr2R 12482972 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-229_75b 354 chr2R 12602818 12602837 chr2R 12602902 12602921 5 84 0.0 2.5 1.2 2.3 103 chr2R 12602818 intron Amph + chr2R 12602870 intron Amph + chr2R 12602921 intron Amph + chr2R_5_12600001 chr2R_12600001 RAL-229_75b 355 chr2R 12772781 12772797 chr2R 12772868 12772879 4 86 0.5 1.0 0.8 2.2 98 chr2R 12772781 intergenic not near genes chr2R 12772830 intergenic not near genes chr2R 12772879 intergenic not near genes chr2R_4_12770001 chr2R_12770001 RAL-229_75b 356 chr2R 12808329 12808347 chr2R 12808412 12808442 4 92 1.5 1.5 1.5 1.6 113 chr2R 12808329 intergenic not near genes chr2R 12808386 intergenic not near genes chr2R 12808442 intergenic not near genes chr2R_4_12805001 chr2R_12805001 RAL-229_75b 357 chr2R 12897464 12897481 chr2R 12897554 12897572 5 91 1.0 0.0 0.5 3.3 108 chr2R 12897464 intron vg + chr2R 12897518 intron vg + chr2R 12897572 intron vg + chr2R_5_12895001 chr2R_12895001 RAL-229_75b 358 chr2R 12960556 12960568 chr2R 12960755 12960767 4 199 1.0 2.0 1.5 1.6 211 chr2R 12960556 intergenic not near genes chr2R 12960662 intergenic not near genes chr2R 12960767 intergenic not near genes chr2R_4_12960001 chr2R_12960001 RAL-229_75b 359 chr2R 13372194 13372217 chr2R 13372273 13372296 8 78 1.5 4.5 3.0 2.0 102 chr2R 13372194 intergenic not near genes chr2R 13372245 intergenic not near genes chr2R 13372296 intergenic not near genes chr2R_8_13370001 chr2R_13370001 RAL-229_75b 360 chr2R 13464482 13464499 chr2R 13464604 13464630 5 127 3.0 1.0 2.0 1.7 148 chr2R 13464482 intron arr - chr2R 13464556 intron arr - chr2R 13464630 intron arr - chr2R_5_13460001 chr2R_13460001 RAL-229_75b 361 chr2R 13540415 13540421 chr2R 13540660 13540671 5 248 0.0 4.5 2.2 1.6 256 chr2R 13540415 intron CG6145 - chr2R 13540543 intron CG6145 - chr2R 13540671 intron CG6145 - chr2R_5_13540001 chr2R_13540001 RAL-229_75b 362 chr2R 13566264 13566291 chr2R 13566344 13566371 4 80 1.5 0.5 1.0 2.0 107 chr2R 13566264 intergenic not near genes chr2R 13566318 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-229_75b 363 chr2R 13888761 13888785 chr2R 13888838 13888862 4 77 2.0 0.0 1.0 2.0 101 chr2R 13888761 intron shot - chr2R 13888812 intron shot - chr2R 13888862 intron shot - chr2R_4_13885001 chr2R_13885001 RAL-229_75b 364 chr2R 14266764 14266793 chr2R 14266839 14266869 10 74 1.0 6.0 3.5 2.2 105 chr2R 14266764 intron CG8547 - chr2R 14266816 intron CG8547 - chr2R 14266869 intron CG8547 - chr2R_10_14265001 chr2R_14265001 RAL-229_75b 365 chr2R 14393868 14393896 chr2R 14393953 14393981 6 83 3.5 2.0 2.8 1.6 113 chr2R 14393868 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393981 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-229_75b 366 chr2R 14497388 14497405 chr2R 14498554 14498571 1360 4 1166 1.0 2.0 1.5 1.6 1183 chr2R 14497388 3` UTR Cpsf160 - chr2R 14497980 intron Cpsf160 - chr2R 14498571 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-229_75b 367 chr2R 14530748 14530771 chr2R 14530825 14530853 5 80 1.0 0.5 0.8 2.8 105 chr2R 14530748 intron ttv + chr2R 14530800 intron ttv + chr2R 14530853 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-229_75b 368 chr2R 14565565 14565589 chr2R 14565642 14565665 11 75 4.0 3.5 3.8 2.3 100 chr2R 14565565 intron ttv + chr2R 14565615 intron ttv + chr2R 14565665 intron ttv + chr2R_11_14565001 chr2R_14565001 RAL-229_75b 369 chr2R 14634285 14634301 chr2R 14634372 14634389 5 86 3.0 3.0 3.0 1.2 104 chr2R 14634285 intergenic not near genes chr2R 14634337 intergenic not near genes chr2R 14634389 intergenic not near genes chr2R_5_14630001 chr2R_14630001 RAL-229_75b 370 chr2R 14707142 14707152 chr2R 14707785 14707795 4 643 0.5 1.0 0.8 2.2 653 chr2R 14707142 intron mspo - chr2R 14707468 intron mspo - chr2R 14707795 intron mspo - chr2R_4_14705001 chr2R_14705001 RAL-229_75b 371 chr2R 14790624 14790654 chr2R 14790777 14790797 4 150 3.0 2.0 2.5 1.1 173 chr2R 14790624 intron kn - chr2R 14790710 intron kn - chr2R 14790797 intron kn - chr2R_4_14790001 chr2R_14790001 RAL-229_75b 372 chr2R 14917847 14917880 chr2R 14917932 14917960 7 82 1.5 1.0 1.2 3.2 113 chr2R 14917847 intron CG10249 - chr2R 14917904 intron CG10249 - chr2R 14917960 intron CG10249 - chr2R_7_14915001 chr2R_14915001 RAL-229_75b 373 chr2R 14922141 14922174 chr2R 14922217 14922247 8 74 2.5 4.0 3.2 1.9 106 chr2R 14922141 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922247 intron CG10249 - chr2R_8_14920001 chr2R_14920001 RAL-229_75b 374 chr2R 15015456 15015488 chr2R 15022880 15022912 mdg1 7 7421 2.0 1.5 1.8 2.5 7456 chr2R 15015456 intron hbs + chr2R 15019184 intron hbs + chr2R 15022912 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-229_75b 375 chr2R 15027493 15027518 chr2R 15027575 15027602 4 82 1.5 1.5 1.5 1.6 109 chr2R 15027493 intron hbs + chr2R 15027548 intron hbs + chr2R 15027602 intron hbs + chr2R_4_15025001 chr2R_15025001 RAL-229_75b 376 chr2R 15051083 15051102 chr2R 15051165 15051183 6 79 4.5 1.5 3.0 1.5 100 chr2R 15051083 intergenic not near genes chr2R 15051133 intergenic not near genes chr2R 15051183 intergenic not near genes chr2R_6_15050001 chr2R_15050001 RAL-229_75b 377 chr2R 15065622 15065644 chr2R 15065699 15065722 4 74 0.0 0.5 0.2 3.3 100 chr2R 15065622 intergenic not near genes chr2R 15065672 intergenic not near genes chr2R 15065722 intergenic not near genes chr2R_4_15065001 chr2R_15065001 RAL-229_75b 378 chr2R 15186178 15186212 chr2R 15186262 15186292 8 82 1.0 1.0 1.0 4.0 114 chr2R 15186178 intron igl + chr2R 15186235 intron igl + chr2R 15186292 intron igl + chr2R_8_15185001 chr2R_15185001 RAL-229_75b 379 chr2R 15294686 15294700 chr2R 15294768 15294775 5 79 4.0 4.5 4.2 1.0 89 chr2R 15294686 intron,3` UTR Trpm -,CR44241 - chr2R 15294730 intron,3` UTR Trpm -,CR44241 - chr2R 15294775 intron,3` UTR Trpm -,CR44241 - chr2R_5_15290001 chr2R_15290001 RAL-229_75b 380 chr2R 15630354 15630385 chr2R 15630441 15630471 6 84 2.0 1.5 1.8 2.1 117 chr2R 15630354 intron CG42524 + chr2R 15630412 intron CG42524 + chr2R 15630471 intron CG42524 + chr2R_6_15630001 chr2R_15630001 RAL-229_75b 381 chr2R 15833527 15833545 chr2R 15833613 15833624 5 84 1.0 2.5 1.8 1.8 97 chr2R 15833527 intron,intron tun +,Poxn - chr2R 15833576 intron,intron tun +,Poxn - chr2R 15833624 intron,intron tun +,Poxn - chr2R_5_15830001 chr2R_15830001 RAL-229_75b 382 chr2R 16406726 16406744 chr2R 16406804 16406821 5 78 2.0 1.0 1.5 2.0 95 chr2R 16406726 intron Sema-2b + chr2R 16406774 intron Sema-2b + chr2R 16406821 intron Sema-2b + chr2R_5_16405001 chr2R_16405001 RAL-229_75b 383 chr2R 16496332 16496343 chr2R 16496405 16496424 6 80 4.0 0.0 2.0 2.0 92 chr2R 16496332 intergenic not near genes chr2R 16496378 intergenic not near genes chr2R 16496424 intergenic CG7813 - chr2R_6_16495001 chr2R_16495001 RAL-229_75b 384 chr2R 16571871 16571903 chr2R 16571966 16571997 4 95 1.5 2.0 1.8 1.4 126 chr2R 16571871 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16571997 intergenic CG4927 + chr2R_4_16570001 chr2R_16570001 RAL-229_75b 385 chr2R 16617063 16617080 chr2R 16617142 16617159 7 79 1.5 2.5 2.0 2.3 96 chr2R 16617063 intron CG5065 + chr2R 16617111 intron CG5065 + chr2R 16617159 intron CG5065 + chr2R_7_16615001 chr2R_16615001 RAL-229_75b 386 chr2R 16910237 16910241 chr2R 16910332 16910340 4 98 2.5 1.5 2.0 1.3 103 chr2R 16910237 intergenic not near genes chr2R 16910288 intergenic not near genes chr2R 16910340 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-229_75b 387 chr2R 17147240 17147265 chr2R 17152271 17152296 jockey 7 5031 2.5 5.5 4.0 1.4 5056 chr2R 17147240 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152296 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-229_75b 388 chr2R 17188732 17188743 chr2R 17188820 17188830 4 88 0.0 0.0 0.0 4.0 98 chr2R 17188732 intergenic CR44389 - chr2R 17188781 intergenic CR44389 - chr2R 17188830 3` UTR CR44389 - chr2R_4_17185001 chr2R_17185001 RAL-229_75b 389 chr2R 17224973 17224993 chr2R 17225051 17225071 5 77 0.0 1.5 0.8 2.8 98 chr2R 17224973 intron mbl + chr2R 17225022 intron mbl + chr2R 17225071 intron mbl + chr2R_5_17225001 chr2R_17225001 RAL-229_75b 390 chr2R 17236508 17236542 chr2R 17241712 17241735 copia 11 5202 2.0 0.0 1.0 5.5 5227 chr2R 17236508 intron mbl + chr2R 17239122 intron mbl + chr2R 17241735 intron mbl + chr2R_11_17235001 chr2R_17235001 RAL-229_75b 391 chr2R 17312306 17312316 chr2R 17312394 17312404 5 88 1.5 2.0 1.8 1.8 98 chr2R 17312306 intron mbl + chr2R 17312355 intron mbl + chr2R 17312404 intron mbl + chr2R_5_17310001 chr2R_17310001 RAL-229_75b 392 chr2R 17312317 17312336 chr2R 17312391 17312421 8 84 1.5 2.0 1.8 2.9 104 chr2R 17312317 intron mbl + chr2R 17312369 intron mbl + chr2R 17312421 intron mbl + chr2R_8_17310001 chr2R_17310001 RAL-229_75b 393 chr2R 17409701 17409705 chr2R 17409762 17409779 4 73 0.0 2.5 1.2 1.8 78 chr2R 17409701 intron CG30101 - chr2R 17409740 intron CG30101 - chr2R 17409779 exon CG30101 - chr2R_4_17405001 chr2R_17405001 RAL-229_75b 394 chr2R 17459007 17459039 chr2R 17459091 17459124 6 85 0.5 2.5 1.5 2.4 117 chr2R 17459007 intron CG14478 + chr2R 17459066 intron CG14478 + chr2R 17459124 intron CG14478 + chr2R_6_17455001 chr2R_17455001 RAL-229_75b 395 chr2R 17655210 17655216 chr2R 17655287 17655293 4 77 3.0 2.5 2.8 1.1 83 chr2R 17655210 intron CCHa1-R - chr2R 17655252 intron CCHa1-R - chr2R 17655293 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-229_75b 396 chr2R 17835033 17835050 chr2R 17835127 17835141 5 92 1.5 1.5 1.5 2.0 108 chr2R 17835033 intron grh + chr2R 17835087 intron grh + chr2R 17835141 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-229_75b 397 chr2R 17852922 17852956 chr2R 17853013 17853047 6 90 3.5 1.0 2.2 1.9 125 chr2R 17852922 intron olf186-F + chr2R 17852984 intron olf186-F + chr2R 17853047 intron olf186-F + chr2R_6_17850001 chr2R_17850001 RAL-229_75b 398 chr2R 17968602 17968627 chr2R 17968706 17968731 5 104 3.5 5.0 4.2 1.0 129 chr2R 17968602 intergenic not near genes chr2R 17968666 intergenic not near genes chr2R 17968731 intergenic not near genes chr2R_5_17965001 chr2R_17965001 RAL-229_75b 399 chr2R 18075972 18076002 chr2R 18076063 18076083 5 91 3.0 5.0 4.0 1.0 111 chr2R 18075972 intron CG34386 + chr2R 18076028 intron CG34386 + chr2R 18076083 intron CG34386 + chr2R_5_18075001 chr2R_18075001 RAL-229_75b 400 chr2R 18308286 18308307 chr2R 18308392 18308413 9 104 3.0 2.5 2.8 2.4 127 chr2R 18308286 intron sbb - chr2R 18308350 intron sbb - chr2R 18308413 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-229_75b 401 chr2R 18479057 18479083 chr2R 18479135 18479162 6 78 4.0 1.5 2.8 1.6 105 chr2R 18479057 intron CG30116 - chr2R 18479110 intron CG30116 - chr2R 18479162 intron CG30116 - chr2R_6_18475001 chr2R_18475001 RAL-229_75b 402 chr2R 18483037 18483056 chr2R 18483273 18483292 5 238 2.5 4.5 3.5 1.1 255 chr2R 18483037 intron CG30116 - chr2R 18483164 intron CG30116 - chr2R 18483292 intron CG30116 - chr2R_5_18480001 chr2R_18480001 RAL-229_75b 403 chr2R 18528198 18528215 chr2R 18528278 18528297 7 83 1.0 2.5 1.8 2.5 99 chr2R 18528198 intron CG10924 + chr2R 18528248 intron CG10924 + chr2R 18528297 intron CG10924 + chr2R_7_18525001 chr2R_18525001 RAL-229_75b 404 chr2R 18575811 18575823 chr2R 18581990 18582011 3S18 5 6184 2.0 5.0 3.5 1.1 6200 chr2R 18575811 intron GEFmeso - chr2R 18578911 intron GEFmeso - chr2R 18582011 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-229_75b 405 chr2R 18590866 18590901 chr2R 18600018 18600036 roo 7 9148 2.0 4.0 3.0 1.8 9170 chr2R 18590866 intron GEFmeso - chr2R 18595451 intron GEFmeso - chr2R 18600036 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-229_75b 406 chr2R 18686908 18686936 chr2R 18687174 18687201 4 266 0.0 1.5 0.8 2.2 293 chr2R 18686908 intergenic CG44433 -,CG42855 + chr2R 18687054 intergenic CG44433 -,CG42855 + chr2R 18687201 intergenic CG42855 +,CG44433 - chr2R_4_18685001 chr2R_18685001 RAL-229_75b 407 chr2R 18725651 18725674 chr2R 18725744 18725767 5 93 1.0 1.5 1.2 2.3 116 chr2R 18725651 intron Hs3st-A + chr2R 18725709 intron Hs3st-A + chr2R 18725767 intron Hs3st-A + chr2R_5_18725001 chr2R_18725001 RAL-229_75b 408 chr2R 18777828 18777847 chr2R 18778154 18778173 6 326 0.5 2.0 1.2 2.7 345 chr2R 18777828 intergenic not near genes chr2R 18778000 intergenic not near genes chr2R 18778173 intergenic not near genes chr2R_6_18775001 chr2R_18775001 RAL-229_75b 409 chr2R 18785928 18785946 chr2R 18786001 18786025 5 78 2.5 4.5 3.5 1.1 97 chr2R 18785928 intron CG15080 + chr2R 18785976 intron CG15080 + chr2R 18786025 intron CG15080 + chr2R_5_18785001 chr2R_18785001 RAL-229_75b 410 chr2R 18924276 18924301 chr2R 18924353 18924381 4 79 1.5 3.0 2.2 1.2 105 chr2R 18924276 intron sano + chr2R 18924328 intron sano + chr2R 18924381 intron sano + chr2R_4_18920001 chr2R_18920001 RAL-229_75b 411 chr2R 18964920 18964950 chr2R 18964996 18965026 7 76 2.0 1.5 1.8 2.5 106 chr2R 18964920 intergenic not near genes chr2R 18964973 intergenic not near genes chr2R 18965026 intergenic not near genes chr2R_7_18960001 chr2R_18960001 RAL-229_75b 412 chr2R 19203319 19203332 chr2R 19203735 19203751 4 419 15.0 13.0 14.0 0.3 432 chr2R 19203319 intron hppy + chr2R 19203535 intron hppy + chr2R 19203751 intron hppy + chr2R_4_19200001 chr2R_19200001 RAL-229_75b 413 chr2R 19254648 19254669 chr2R 19254773 19254776 6 122 2.0 3.0 2.5 1.7 128 chr2R 19254648 intergenic not near genes chr2R 19254712 intergenic not near genes chr2R 19254776 intergenic not near genes chr2R_6_19250001 chr2R_19250001 RAL-229_75b 414 chr2R 19539751 19539758 chr2R 19539866 19539873 4 115 3.0 2.0 2.5 1.1 122 chr2R 19539751 intron sm - chr2R 19539812 intron sm - chr2R 19539873 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-229_75b 415 chr2R 19715852 19715853 chr2R 19723327 19723340 blood 4 7484 5.0 4.0 4.5 0.7 7488 chr2R 19715852 intergenic not near genes chr2R 19719596 intergenic not near genes chr2R 19723340 intergenic not near genes chr2R_4_19715001 chr2R_19715001 RAL-229_75b 416 chr2R 19776593 19776630 chr2R 19779916 19779953 jockey 6 3323 3.0 2.5 2.8 1.6 3360 chr2R 19776593 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-229_75b 417 chr2R 19845086 19845111 chr2R 19845167 19845192 6 81 3.0 4.5 3.8 1.2 106 chr2R 19845086 intergenic not near genes chr2R 19845139 intergenic not near genes chr2R 19845192 intergenic not near genes chr2R_6_19845001 chr2R_19845001 RAL-229_75b 418 chr2R 19914847 19914862 chr2R 19922259 19922274 mdg1 6 7412 3.0 0.5 1.8 2.1 7427 chr2R 19914847 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922274 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-229_75b 419 chr2R 20031910 20031938 chr2R 20032006 20032034 10 96 3.5 4.0 3.8 2.1 124 chr2R 20031910 intergenic not near genes chr2R 20031972 intergenic not near genes chr2R 20032034 intergenic not near genes chr2R_10_20030001 chr2R_20030001 RAL-229_75b 420 chr2R 20192998 20193034 chr2R 20193074 20193110 11 75 3.0 4.0 3.5 2.4 112 chr2R 20192998 intergenic not near genes chr2R 20193054 intergenic not near genes chr2R 20193110 intergenic not near genes chr2R_11_20190001 chr2R_20190001 RAL-229_75b 421 chr2R 20511881 20511896 chr2R 20512585 20512607 7 710 1.0 6.0 3.5 1.6 726 chr2R 20511881 intergenic CR44649 +,CR44648 + chr2R 20512244 intergenic CR44649 +,CG13426 - chr2R 20512607 intergenic CG13426 - chr2R_7_20510001 chr2R_20510001 RAL-229_75b 422 chr2R 20592583 20592601 chr2R 20592664 20592681 4 78 4.0 1.0 2.5 1.1 98 chr2R 20592583 intron bl + chr2R 20592632 intron bl + chr2R 20592681 intron bl + chr2R_4_20590001 chr2R_20590001 RAL-229_75b 423 chr2R 20869413 20869445 chr2R 20869501 20869511 5 84 2.5 2.0 2.2 1.6 98 chr2R 20869413 intergenic IM4 - chr2R 20869462 intergenic IM4 - chr2R 20869511 intergenic IM4 - chr2R_5_20865001 chr2R_20865001 RAL-229_75b 424 chr2R 21461459 21461483 chr2R 21461565 21461589 6 106 2.5 0.0 1.2 2.7 130 chr2R 21461459 intron Sdc - chr2R 21461524 intron Sdc - chr2R 21461589 intron Sdc - chr2R_6_21460001 chr2R_21460001 RAL-229_75b 425 chr2R 21540691 21540697 chr2R 21540909 21540914 4 218 1.5 1.0 1.2 1.8 223 chr2R 21540691 intron Egfr + chr2R 21540802 intron Egfr + chr2R 21540914 intron Egfr + chr2R_4_21540001 chr2R_21540001 RAL-229_75b 426 chr2R 21612354 21612379 chr2R 21612442 21612466 4 88 1.5 1.0 1.2 1.8 112 chr2R 21612354 intron CG15673 - chr2R 21612410 intron CG15673 - chr2R 21612466 intron CG15673 - chr2R_4_21610001 chr2R_21610001 RAL-229_75b 427 chr2R 21660878 21660910 chr2R 21660971 21661003 4 92 2.5 2.0 2.2 1.2 125 chr2R 21660878 intergenic pirk - chr2R 21660940 intergenic pirk - chr2R 21661003 3` UTR pirk - chr2R_4_21660001 chr2R_21660001 RAL-229_75b 428 chr2R 21753087 21753116 chr2R 21753572 21753601 roo 6 485 4.0 2.5 3.2 1.4 514 chr2R 21753087 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-229_75b 429 chr2R 21809528 21809556 chr2R 21817762 21817793 roo 5 8238 1.0 2.5 1.8 1.8 8265 chr2R 21809528 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817793 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-229_75b 430 chr2R 21857353 21857372 chr2R 21857444 21857463 6 90 2.5 4.5 3.5 1.3 110 chr2R 21857353 intergenic not near genes chr2R 21857408 intergenic not near genes chr2R 21857463 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-229_75b 431 chr2R 21985544 21985561 chr2R 21985625 21985642 6 81 2.0 1.5 1.8 2.1 98 chr2R 21985544 intergenic CG30401 - chr2R 21985593 intergenic CG30401 - chr2R 21985642 3` UTR CG30401 - chr2R_6_21985001 chr2R_21985001 RAL-229_75b 432 chr2R 22014215 22014229 chr2R 22014291 22014301 5 73 2.5 3.0 2.8 1.3 86 chr2R 22014215 intron CG34370 - chr2R 22014258 intron CG34370 - chr2R 22014301 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-229_75b 433 chr2R 2146570 2146570 chr2R 22037689 22037706 4 19891123 4.5 7.5 6.0 0.6 19891136 chr2R 2146570 intron CG17684 - chr2R 12092138 3` UTR jeb - chr2R 22037706 5` UTR CG34370 - chr2R_4_12090001 chr2R_12090001 RAL-229_75b 434 chr2R 22072682 22072714 chr2R 22072767 22072799 8 84 1.5 4.5 3.0 2.0 117 chr2R 22072682 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072799 exon CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-229_75b 435 chr2R 22349696 22349726 chr2R 22351478 22351493 jockey 5 1780 1.5 2.0 1.8 1.8 1797 chr2R 22349696 intron Liprin-gamma - chr2R 22350594 intron Liprin-gamma - chr2R 22351493 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-229_75b 436 chr2R 22362663 22362682 chr2R 22362742 22362751 4 76 3.5 1.5 2.5 1.1 88 chr2R 22362663 intron Liprin-gamma - chr2R 22362707 intron Liprin-gamma - chr2R 22362751 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-229_75b 437 chr2R 22460380 22460404 chr2R 22460459 22460483 4 79 4.0 2.0 3.0 1.0 103 chr2R 22460380 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460483 intron CG10384 + chr2R_4_22460001 chr2R_22460001 RAL-229_75b 438 chr2R 22499853 22499888 chr2R 22499929 22499955 9 73 0.0 1.5 0.8 5.0 102 chr2R 22499853 intron px - chr2R 22499904 intron px - chr2R 22499955 intron px - chr2R_9_22495001 chr2R_22495001 RAL-229_75b 439 chr2R 22834254 22834546 chr2R 22836314 22836589 4 2049 9.0 4.0 6.5 0.5 2335 chr2R 22834254 exon CG30265 + chr2R 22835422 exon CG12490 + chr2R 22836589 3` UTR CG12490 + chr2R_4_22835001 chr2R_22835001 RAL-229_75b 440 chr2R 22843023 22843048 chr2R 22844985 22845010 flea 6 1960 5.0 6.0 5.5 0.9 1987 chr2R 22843023 intergenic CG9826 + chr2R 22844016 intergenic not near genes chr2R 22845010 intergenic not near genes chr2R_6_22840001 chr2R_22840001 RAL-229_75b 441 chr2R 22942627 22942640 chr2R 22942738 22942752 5 112 4.0 1.0 2.5 1.4 125 chr2R 22942627 5` UTR CG42694 + chr2R 22942690 5` UTR CG42694 + chr2R 22942752 5` UTR CG42694 + chr2R_5_22940001 chr2R_22940001 RAL-229_75b 442 chr2R 22968149 22968169 chr2R 22968228 22968238 4 78 1.5 2.0 1.8 1.4 89 chr2R 22968149 intergenic not near genes chr2R 22968194 intergenic not near genes chr2R 22968238 intergenic not near genes chr2R_4_22965001 chr2R_22965001 RAL-229_75b 443 chr2R 22991638 22991653 chr2R 22991729 22991744 4 91 2.5 4.0 3.2 1.0 106 chr2R 22991638 intron twi + chr2R 22991691 intron twi + chr2R 22991744 intron twi + chr2R_4_22990001 chr2R_22990001 RAL-229_75b 444 chr2R 23061776 23061786 chr2R 23061869 23061880 5 94 1.5 4.0 2.8 1.3 104 chr2R 23061776 3` UTR l(2)06496 - chr2R 23061828 3` UTR l(2)06496 - chr2R 23061880 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-229_75b 445 chr2R 23175037 23175066 chr2R 23175114 23175141 6 74 1.5 3.0 2.2 1.9 104 chr2R 23175037 intron CG34371 - chr2R 23175089 intron CG34371 - chr2R 23175141 intron CG34371 - chr2R_6_23175001 chr2R_23175001 RAL-229_75b 446 chr2R 23229953 23229977 chr2R 23230027 23230052 6 76 0.5 4.0 2.2 1.9 99 chr2R 23229953 intergenic not near genes chr2R 23230002 intergenic not near genes chr2R 23230052 intergenic not near genes chr2R_6_23230001 chr2R_23230001 RAL-229_75b 447 chr2R 23384153 23384170 chr2R 23384379 23384396 6 227 2.5 2.0 2.2 1.9 243 chr2R 23384153 5` UTR CR44784 + chr2R 23384274 exon CG30414 - chr2R 23384396 exon CG30414 - chr2R_6_23380001 chr2R_23380001 RAL-229_75b 448 chr2R 23422654 23422670 chr2R 23422734 23422748 6 78 3.5 2.5 3.0 1.5 94 chr2R 23422654 intron CG9815 - chr2R 23422701 intron CG9815 - chr2R 23422748 intron CG9815 - chr2R_6_23420001 chr2R_23420001 RAL-229_75b 449 chr2R 23521416 23521432 chr2R 23521501 23521528 4 91 3.0 2.5 2.8 1.1 112 chr2R 23521416 intron RabX1 - chr2R 23521472 intron RabX1 - chr2R 23521528 intron RabX1 - chr2R_4_23520001 chr2R_23520001 RAL-229_75b 450 chr2R 23607038 23607192 chr2R 23607119 23607285 9 85 1.5 1.5 1.5 3.6 247 chr2R 23607038 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607285 intron CG17664 - chr2R_9_23605001 chr2R_23605001 RAL-229_75b 451 chr2R 23776167 23776174 chr2R 23776231 23776250 4 73 1.5 3.0 2.2 1.2 83 chr2R 23776167 intron CG9850 - chr2R 23776208 intron CG9850 - chr2R 23776250 intron CG9850 - chr2R_4_23775001 chr2R_23775001 RAL-229_75b 452 chr2R 23914298 23914332 chr2R 23921922 23921952 412 6 7618 1.0 2.0 1.5 2.4 7654 chr2R 23914298 exon kcc + chr2R 23918125 intron kcc + chr2R 23921952 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-229_75b 453 chr2R 23986519 23986549 chr2R 23986599 23986629 5 80 2.0 1.5 1.8 1.8 110 chr2R 23986519 intron Phm - chr2R 23986574 intron Phm - chr2R 23986629 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-229_75b 454 chr2R 23993918 23993940 chr2R 23993998 23994020 5 79 1.5 2.5 2.0 1.7 102 chr2R 23993918 intron CG3860 - chr2R 23993969 intron CG3860 - chr2R 23994020 intron CG3860 - chr2R_5_23990001 chr2R_23990001 RAL-229_75b 455 chr2R 24031390 24031414 chr2R 24031468 24031486 6 79 0.0 2.5 1.2 2.7 96 chr2R 24031390 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031486 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-229_75b 456 chr2R 24177245 24177266 chr2R 24184730 24184748 412 5 7484 2.0 4.5 3.2 1.2 7503 chr2R 24177245 3` UTR Nop60B + chr2R 24180996 intron Nop60B + chr2R 24184748 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-229_75b 457 chr2R 24351412 24351429 chr2R 24351493 24351494 4 77 3.5 0.5 2.0 1.3 82 chr2R 24351412 intron bs + chr2R 24351453 intron bs + chr2R 24351494 intron,3` UTR bs +,CR44811 - chr2R_4_24350001 chr2R_24350001 RAL-229_75b 458 chr2R 24383825 24383858 chr2R 24383906 24383933 9 76 1.0 2.0 1.5 3.6 108 chr2R 24383825 intron mAChR-A - chr2R 24383879 intron mAChR-A - chr2R 24383933 exon mAChR-A - chr2R_9_24380001 chr2R_24380001 RAL-229_75b 459 chr2R 24498471 24498484 chr2R 24498666 24498668 5 192 1.5 1.5 1.5 2.0 197 chr2R 24498471 5` UTR Yu + chr2R 24498570 5` UTR Yu + chr2R 24498668 5` UTR Yu + chr2R_5_24495001 chr2R_24495001 RAL-229_75b 460 chr2R 24548928 24548943 chr2R 24549005 24549016 6 80 2.0 1.0 1.5 2.4 88 chr2R 24548928 intron,intron CG4622 -,ITP + chr2R 24548972 intron,intron CG4622 -,ITP + chr2R 24549016 intron,intron CG4622 -,ITP + chr2R_6_24545001 chr2R_24545001 RAL-229_75b 461 chr2R 24662479 24662500 chr2R 24662559 24662579 4 80 4.0 3.0 3.5 0.9 100 chr2R 24662479 intergenic CG3663 +,Cpr60D - chr2R 24662529 intergenic CG3663 +,Cpr60D - chr2R 24662579 intergenic Cpr60D -,CG3663 + chr2R_4_24660001 chr2R_24660001 RAL-229_75b 462 chr2R 24719800 24719819 chr2R 24719911 24719913 7 106 3.5 4.0 3.8 1.5 113 chr2R 24719800 intron Mid1 - chr2R 24719856 intron Mid1 - chr2R 24719913 intron Mid1 - chr2R_7_24715001 chr2R_24715001 RAL-229_75b 463 chr2R 24727886 24727918 chr2R 24735394 24735398 mdg1 5 7499 0.5 2.5 1.5 2.0 7512 chr2R 24727886 intron Mid1 - chr2R 24731642 intron Mid1 - chr2R 24735398 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-229_75b 464 chr2R 24794365 24794371 chr2R 24794442 24794452 4 78 3.5 2.0 2.8 1.1 87 chr2R 24794365 intron CR43257 + chr2R 24794408 intron CR43257 + chr2R 24794452 intron CR43257 + chr2R_4_24790001 chr2R_24790001 RAL-229_75b 465 chr2R 24823809 24823833 chr2R 24823915 24823939 6 103 1.0 2.5 1.8 2.1 130 chr2R 24823809 intron Dll + chr2R 24823874 intron Dll + chr2R 24823939 intron Dll + chr2R_6_24820001 chr2R_24820001 RAL-229_75b 466 chr2R 24883880 24883911 chr2R 24883963 24883994 8 81 2.5 2.0 2.2 2.5 114 chr2R 24883880 intron NKAIN + chr2R 24883937 intron NKAIN + chr2R 24883994 intron NKAIN + chr2R_8_24880001 chr2R_24880001 RAL-229_75b 467 chr2R 24943973 24943994 chr2R 24945697 24945720 7 1723 1.5 4.5 3.0 1.8 1747 chr2R 24943973 intron CG15861 - chr2R 24944846 5` UTR CG15861 - chr2R 24945720 5` UTR CG3770 + chr2R_7_24940001 chr2R_24940001 RAL-229_75b 468 chr2R 25004895 25004921 chr2R 25004973 25004999 12 77 1.0 0.5 0.8 6.7 104 chr2R 25004895 intron zip - chr2R 25004947 intron zip - chr2R 25004999 intron zip - chr2R_12_25000001 chr2R_25000001 RAL-229_75b 469 chr2R 25014545 25014575 chr2R 25014621 25014629 5 72 2.0 1.5 1.8 1.8 84 chr2R 25014545 intron uzip + chr2R 25014587 intron uzip + chr2R 25014629 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-229_75b 470 chr2R 25078983 25079022 chr2R 25079111 25079150 8 127 2.0 1.0 1.5 3.2 167 chr2R 25078983 intron gol - chr2R 25079066 intron gol - chr2R 25079150 intron gol - chr2R_8_25075001 chr2R_25075001 RAL-229_75b 471 chr2R 25124467 25124476 chr2R 25124556 25124567 4 90 1.0 1.0 1.0 2.0 100 chr2R 25124467 intron lov - chr2R 25124517 intron lov - chr2R 25124567 intron lov - chr2R_4_25120001 chr2R_25120001 RAL-229_75b 472 chr2R 25135273 25135287 chr2R 25135355 25135372 4 84 5.0 1.5 3.2 1.0 99 chr2R 25135273 intron lov - chr2R 25135322 intron lov - chr2R 25135372 intron lov - chr2R_4_25135001 chr2R_25135001 RAL-229_75b 473 chr3L 68996 69011 chr3L 69083 69098 5 84 1.0 3.5 2.2 1.6 102 chr3L 68996 intergenic Lsp1gamma +,CR44510 + chr3L 69047 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-229_75b 474 chr3L 93804 93813 chr3L 93877 93894 5 76 2.0 3.0 2.5 1.4 90 chr3L 93804 intergenic not near genes chr3L 93849 intergenic not near genes chr3L 93894 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-229_75b 475 chr3L 110216 110241 chr3L 119383 119408 roo 4 9167 2.5 2.0 2.2 1.2 9192 chr3L 110216 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119408 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-229_75b 476 chr3L 141325 141329 chr3L 141425 141435 4 104 1.5 0.5 1.0 2.0 110 chr3L 141325 intron Pdk1 + chr3L 141380 intron Pdk1 + chr3L 141435 intron Pdk1 + chr3L_4_140001 chr3L_140001 RAL-229_75b 477 chr3L 165679 165708 chr3L 165817 165846 7 137 0.5 2.0 1.2 3.2 167 chr3L 165679 intron p130CAS + chr3L 165762 intron p130CAS + chr3L 165846 intron p130CAS + chr3L_7_165001 chr3L_165001 RAL-229_75b 478 chr3L 338807 338833 chr3L 338901 338903 6 90 3.5 2.5 3.0 1.5 96 chr3L 338807 intron,intron Ptpmeg +,mthl10 - chr3L 338855 intron,intron Ptpmeg +,mthl10 - chr3L 338903 intron,intron Ptpmeg +,mthl10 - chr3L_6_335001 chr3L_335001 RAL-229_75b 479 chr3L 421048 421082 chr3L 421143 421177 9 91 1.5 0.5 1.0 4.5 129 chr3L 421048 intergenic not near genes chr3L 421112 intergenic not near genes chr3L 421177 intergenic not near genes chr3L_9_420001 chr3L_420001 RAL-229_75b 480 chr3L 642472 642498 chr3L 642562 642589 4 90 2.0 1.5 1.8 1.4 117 chr3L 642472 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642589 5` UTR CR43334 + chr3L_4_640001 chr3L_640001 RAL-229_75b 481 chr3L 665822 665835 chr3L 666088 666102 5 266 0.5 3.5 2.0 1.7 280 chr3L 665822 intergenic not near genes chr3L 665962 intergenic not near genes chr3L 666102 intergenic not near genes chr3L_5_665001 chr3L_665001 RAL-229_75b 482 chr3L 732844 732846 chr3L 733044 733059 4 211 1.5 3.5 2.5 1.1 215 chr3L 732844 intergenic not near genes chr3L 732952 intergenic not near genes chr3L 733059 intergenic not near genes chr3L_4_730001 chr3L_730001 RAL-229_75b 483 chr3L 789923 789944 chr3L 790407 790428 roo 4 484 2.0 3.5 2.8 1.1 505 chr3L 789923 intergenic not near genes chr3L 790176 intergenic not near genes chr3L 790428 intergenic not near genes chr3L_4_790001 chr3L_790001 RAL-229_75b 484 chr3L 858002 858026 chr3L 866483 866502 Tirant 4 8479 3.0 1.5 2.2 1.2 8500 chr3L 858002 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866502 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-229_75b 485 chr3L 925198 925205 chr3L 932604 932631 mdg1 4 7421 0.5 0.0 0.2 3.3 7433 chr3L 925198 intron Glut1 + chr3L 928914 intron Glut1 + chr3L 932631 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-229_75b 486 chr3L 939779 939800 chr3L 940900 940921 jockey 8 1121 5.0 5.0 5.0 1.3 1142 chr3L 939779 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-229_75b 487 chr3L 958316 958348 chr3L 958397 958431 5 83 4.5 2.0 3.2 1.2 115 chr3L 958316 intron Glut1 + chr3L 958374 intron Glut1 + chr3L 958431 intron Glut1 + chr3L_5_955001 chr3L_955001 RAL-229_75b 488 chr3L 1003065 1003081 chr3L 1003134 1003158 6 75 2.0 2.5 2.2 1.9 93 chr3L 1003065 intron trio - chr3L 1003112 intron trio - chr3L 1003158 intron trio - chr3L_6_1000001 chr3L_1000001 RAL-229_75b 489 chr3L 1040559 1040566 chr3L 1040640 1040650 4 81 4.5 2.5 3.5 0.9 91 chr3L 1040559 intron bab1 - chr3L 1040604 intron bab1 - chr3L 1040650 intron bab1 - chr3L_4_1040001 chr3L_1040001 RAL-229_75b 490 chr3L 1154130 1154163 chr3L 1163280 1163313 roo 6 9145 3.0 3.0 3.0 1.5 9183 chr3L 1154130 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163313 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-229_75b 491 chr3L 1219596 1219611 chr3L 1227329 1227344 412 5 7733 2.5 1.0 1.8 1.8 7748 chr3L 1219596 intron mwh + chr3L 1223470 intron mwh + chr3L 1227344 intron mwh + chr3L_5_1220001 chr3L_1220001 RAL-229_75b 492 chr3L 1268154 1268175 chr3L 1268341 1268357 7 186 3.0 0.0 1.5 2.8 203 chr3L 1268154 intron CG9134 + chr3L 1268256 intron CG9134 + chr3L 1268357 intron CG9134 + chr3L_7_1265001 chr3L_1265001 RAL-229_75b 493 chr3L 1454250 1454268 chr3L 1454327 1454345 6 77 2.0 6.0 4.0 1.2 95 chr3L 1454250 intron Ptp61F - chr3L 1454298 intron Ptp61F - chr3L 1454345 intron Ptp61F - chr3L_6_1450001 chr3L_1450001 RAL-229_75b 494 chr3L 1506008 1506015 chr3L 1513599 1513612 17.6 6 7595 5.0 1.0 3.0 1.5 7604 chr3L 1506008 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513612 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-229_75b 495 chr3L 1675515 1675545 chr3L 1675592 1675622 8 76 1.5 5.5 3.5 1.8 107 chr3L 1675515 intron CG7991 + chr3L 1675568 intron CG7991 + chr3L 1675622 intron CG7991 + chr3L_8_1675001 chr3L_1675001 RAL-229_75b 496 chr3L 1728517 1728537 chr3L 1728601 1728622 5 85 2.5 2.0 2.2 1.6 105 chr3L 1728517 intron drpr - chr3L 1728570 intron drpr - chr3L 1728622 intron drpr - chr3L_5_1725001 chr3L_1725001 RAL-229_75b 497 chr3L 1848642 1848670 chr3L 1848720 1848747 6 78 2.5 1.0 1.8 2.1 105 chr3L 1848642 intergenic not near genes chr3L 1848694 intergenic not near genes chr3L 1848747 intergenic not near genes chr3L_6_1845001 chr3L_1845001 RAL-229_75b 498 chr3L 1885158 1885184 chr3L 1885237 1885264 6 80 0.5 1.5 1.0 3.0 106 chr3L 1885158 intergenic Aprt -,Tmhs + chr3L 1885211 intergenic Aprt -,Tmhs + chr3L 1885264 intergenic Aprt -,Tmhs + chr3L_6_1885001 chr3L_1885001 RAL-229_75b 499 chr3L 1988838 1988873 chr3L 1989017 1989052 5 175 2.5 2.5 2.5 1.4 214 chr3L 1988838 intergenic not near genes chr3L 1988945 intergenic not near genes chr3L 1989052 intergenic not near genes chr3L_5_1985001 chr3L_1985001 RAL-229_75b 500 chr3L 2308011 2308019 chr3L 2308117 2308125 4 106 4.5 7.0 5.8 0.6 114 chr3L 2308011 intergenic not near genes chr3L 2308068 intergenic not near genes chr3L 2308125 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-229_75b 501 chr3L 2308021 2308036 chr3L 2308112 2308142 6 103 2.0 5.5 3.8 1.2 121 chr3L 2308021 intergenic not near genes chr3L 2308082 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-229_75b 502 chr3L 2316466 2316495 chr3L 2316879 2316905 6 412 0.0 1.0 0.5 4.0 439 chr3L 2316466 intergenic not near genes chr3L 2316686 intergenic CR45427 - chr3L 2316905 intergenic CR45427 - chr3L_6_2315001 chr3L_2315001 RAL-229_75b 503 chr3L 2317570 2317585 chr3L 2319384 2319399 4 1812 2.0 4.5 3.2 1.0 1829 chr3L 2317570 3` UTR CR45427 - chr3L 2318484 intergenic not near genes chr3L 2319399 3` UTR CR45426 - chr3L_4_2315001 chr3L_2315001 RAL-229_75b 504 chr3L 2411557 2411587 chr3L 2411639 2411669 5 81 1.5 1.5 1.5 2.0 112 chr3L 2411557 intron CG45186 + chr3L 2411613 intron CG45186 + chr3L 2411669 intron CG45186 + chr3L_5_2410001 chr3L_2410001 RAL-229_75b 505 chr3L 2444269 2444271 chr3L 2444354 2444362 4 88 4.0 2.0 3.0 1.0 93 chr3L 2444269 intron CG45186 + chr3L 2444316 intron CG45186 + chr3L 2444362 intron CG45186 + chr3L_4_2440001 chr3L_2440001 RAL-229_75b 506 chr3L 2447503 2447536 chr3L 2456659 2456692 roo 6 9152 1.5 2.0 1.8 2.1 9189 chr3L 2447503 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-229_75b 507 chr3L 2493725 2493845 chr3L 2493803 2493923 12 77 1.5 1.5 1.5 4.8 198 chr3L 2493725 intron CG45186 + chr3L 2493824 intron CG45186 + chr3L 2493923 intron CG45186 + chr3L_12_2490001 chr3L_2490001 RAL-229_75b 508 chr3L 2502081 2502091 chr3L 2502158 2502169 4 78 1.0 3.0 2.0 1.3 88 chr3L 2502081 intron CG16758 - chr3L 2502125 intron CG16758 - chr3L 2502169 intron CG16758 - chr3L_4_2500001 chr3L_2500001 RAL-229_75b 509 chr3L 2533647 2533674 chr3L 2533729 2533755 4 80 3.0 0.5 1.8 1.4 108 chr3L 2533647 intron Spn - chr3L 2533701 intron Spn - chr3L 2533755 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-229_75b 510 chr3L 2927841 2927870 chr3L 2936118 2936147 Tirant 8 8275 1.5 0.5 1.0 4.0 8306 chr3L 2927841 intron Shab + chr3L 2931994 intron Shab + chr3L 2936147 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-229_75b 511 chr3L 3027604 3027613 chr3L 3028605 3028613 5 1001 5.5 3.0 4.2 1.0 1009 chr3L 3027604 intergenic not near genes chr3L 3028108 intergenic not near genes chr3L 3028613 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-229_75b 512 chr3L 3178738 3178749 chr3L 3178819 3178830 7 81 4.0 0.5 2.2 2.2 92 chr3L 3178738 intergenic CG14964 -,Girdin + chr3L 3178784 intergenic Girdin +,CG14964 - chr3L 3178830 intergenic Girdin +,CG14964 - chr3L_7_3175001 chr3L_3175001 RAL-229_75b 513 chr3L 3259821 3259832 chr3L 3259921 3259931 5 100 0.0 3.0 1.5 2.0 110 chr3L 3259821 intron ckd + chr3L 3259876 intron ckd + chr3L 3259931 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-229_75b 514 chr3L 3281461 3281479 chr3L 3281934 3281975 Doc 7 492 2.0 5.0 3.5 1.6 514 chr3L 3281461 intron CG12017 + chr3L 3281718 intron CG12017 + chr3L 3281975 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-229_75b 515 chr3L 3310292 3310326 chr3L 3310371 3310405 7 74 2.5 2.0 2.2 2.2 113 chr3L 3310292 intron ZnT63C + chr3L 3310348 intron ZnT63C + chr3L 3310405 intron ZnT63C + chr3L_7_3310001 chr3L_3310001 RAL-229_75b 516 chr3L 3475075 3475113 chr3L 3475519 3475556 jockey 8 444 0.5 2.5 1.5 3.2 481 chr3L 3475075 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-229_75b 517 chr3L 3577737 3577765 chr3L 3577815 3577843 5 78 2.0 2.0 2.0 1.7 106 chr3L 3577737 intron Eip63E + chr3L 3577790 intron Eip63E + chr3L 3577843 intron Eip63E + chr3L_5_3575001 chr3L_3575001 RAL-229_75b 518 chr3L 3601304 3601307 chr3L 3606613 3606618 copia 4 5309 6.5 2.0 4.2 0.8 5314 chr3L 3601304 intron Eip63E + chr3L 3603961 intron Eip63E + chr3L 3606618 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-229_75b 519 chr3L 3601313 3601332 chr3L 3606609 3606616 copia 6 5302 2.0 2.0 2.0 2.0 5303 chr3L 3601313 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606616 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-229_75b 520 chr3L 3665930 3665942 chr3L 3666006 3666032 5 87 2.5 2.5 2.5 1.4 102 chr3L 3665930 intergenic not near genes chr3L 3665981 intergenic not near genes chr3L 3666032 intergenic not near genes chr3L_5_3665001 chr3L_3665001 RAL-229_75b 521 chr3L 3798053 3798074 chr3L 3798134 3798153 6 80 1.0 3.0 2.0 2.0 100 chr3L 3798053 intron CG32264 - chr3L 3798103 intron CG32264 - chr3L 3798153 intron CG32264 - chr3L_6_3795001 chr3L_3795001 RAL-229_75b 522 chr3L 3815051 3815065 chr3L 3815132 3815146 6 81 5.5 2.0 3.8 1.2 95 chr3L 3815051 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815098 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815146 intron,intron Scsalpha +,CR43932 - chr3L_6_3815001 chr3L_3815001 RAL-229_75b 523 chr3L 3833738 3833769 chr3L 3833979 3834010 pogo 4 241 1.5 1.0 1.2 1.8 272 chr3L 3833738 intron enc + chr3L 3833874 intron enc + chr3L 3834010 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-229_75b 524 chr3L 4120075 4120086 chr3L 4120141 4120167 6 78 1.0 2.5 1.8 2.1 92 chr3L 4120075 intron Chd64 - chr3L 4120121 intron Chd64 - chr3L 4120167 intron Chd64 - chr3L_6_4120001 chr3L_4120001 RAL-229_75b 525 chr3L 4328742 4328765 chr3L 4336240 4336263 412 6 7498 3.0 2.5 2.8 1.6 7521 chr3L 4328742 intron Cip4 - chr3L 4332502 intron Cip4 - chr3L 4336263 intron Cip4 - chr3L_6_4330001 chr3L_4330001 RAL-229_75b 526 chr3L 4347841 4347852 chr3L 4347918 4347937 4 83 4.0 4.5 4.2 0.8 96 chr3L 4347841 intron Cip4 - chr3L 4347889 intron Cip4 - chr3L 4347937 intron Cip4 - chr3L_4_4345001 chr3L_4345001 RAL-229_75b 527 chr3L 4657969 4658000 chr3L 4658431 4658461 6 460 2.5 2.0 2.2 1.9 492 chr3L 4657969 intron axo - chr3L 4658215 intron axo - chr3L 4658461 intron axo - chr3L_6_4655001 chr3L_4655001 RAL-229_75b 528 chr3L 4748710 4748723 chr3L 4748801 4748814 5 91 2.0 2.0 2.0 1.7 104 chr3L 4748710 intron RhoGEF64C + chr3L 4748762 intron RhoGEF64C + chr3L 4748814 intron RhoGEF64C + chr3L_5_4745001 chr3L_4745001 RAL-229_75b 529 chr3L 4858326 4858336 chr3L 4858394 4858405 5 73 1.5 2.5 2.0 1.7 79 chr3L 4858326 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858405 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-229_75b 530 chr3L 5104500 5104512 chr3L 5124634 5124646 5 20133 1.0 2.5 1.8 1.8 20146 chr3L 5104500 intergenic not near genes chr3L 5114573 intergenic not near genes chr3L 5124646 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-229_75b 531 chr3L 5164646 5164670 chr3L 5164722 5164746 5 75 0.5 3.0 1.8 1.8 100 chr3L 5164646 intron shep - chr3L 5164696 intron shep - chr3L 5164746 intron shep - chr3L_5_5160001 chr3L_5160001 RAL-229_75b 532 chr3L 5388205 5388229 chr3L 5388524 5388552 4 322 4.0 5.0 4.5 0.7 347 chr3L 5388205 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388552 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-229_75b 533 chr3L 5516409 5516435 chr3L 5516504 5516521 5 93 3.0 2.0 2.5 1.4 112 chr3L 5516409 intron Lkr - chr3L 5516465 intron Lkr - chr3L 5516521 intron Lkr - chr3L_5_5515001 chr3L_5515001 RAL-229_75b 534 chr3L 5683268 5683291 chr3L 5683355 5683378 8 85 1.5 3.5 2.5 2.3 110 chr3L 5683268 intron sif + chr3L 5683323 intron sif + chr3L 5683378 intron sif + chr3L_8_5680001 chr3L_5680001 RAL-229_75b 535 chr3L 5848067 5848095 chr3L 5848181 5848209 5 113 0.5 3.0 1.8 1.8 142 chr3L 5848067 intergenic not near genes chr3L 5848138 intergenic not near genes chr3L 5848209 intergenic not near genes chr3L_5_5845001 chr3L_5845001 RAL-229_75b 536 chr3L 5926317 5926347 chr3L 5926507 5926537 BS 7 187 2.0 1.5 1.8 2.5 220 chr3L 5926317 intron Vap-33B + chr3L 5926427 intron Vap-33B + chr3L 5926537 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-229_75b 537 chr3L 6001684 6001711 chr3L 6004381 6004411 jockey 5 2697 3.0 0.5 1.8 1.8 2727 chr3L 6001684 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004411 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-229_75b 538 chr3L 6220925 6220945 chr3L 6230067 6230097 roo 7 9149 1.5 3.0 2.2 2.2 9172 chr3L 6220925 5` UTR pncr008:3L + chr3L 6225511 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-229_75b 539 chr3L 6358637 6358646 chr3L 6358713 6358723 6 77 3.0 5.5 4.2 1.2 86 chr3L 6358637 intergenic not near genes chr3L 6358680 intergenic not near genes chr3L 6358723 intergenic not near genes chr3L_6_6355001 chr3L_6355001 RAL-229_75b 540 chr3L 6442158 6442179 chr3L 6442373 6442393 5 215 14.5 25.0 19.8 0.2 235 chr3L 6442158 intron CG42747 + chr3L 6442276 intron CG42747 + chr3L 6442393 intron CG42747 + chr3L_5_6440001 chr3L_6440001 RAL-229_75b 541 chr3L 6577333 6577348 chr3L 6577570 6577596 5 245 0.5 1.5 1.0 2.5 263 chr3L 6577333 intron,intron CG18769 +,jv - chr3L 6577464 intron,intron CG18769 +,jv - chr3L 6577596 intron,intron CG18769 +,jv - chr3L_5_6575001 chr3L_6575001 RAL-229_75b 542 chr3L 6652078 6652108 chr3L 6652156 6652183 14 75 3.5 0.5 2.0 4.7 105 chr3L 6652078 intergenic not near genes chr3L 6652130 intergenic not near genes chr3L 6652183 intergenic not near genes chr3L_14_6650001 chr3L_6650001 RAL-229_75b 543 chr3L 6729295 6729320 chr3L 6729377 6729402 4 82 2.5 2.0 2.2 1.2 107 chr3L 6729295 3` UTR dikar - chr3L 6729348 3` UTR dikar - chr3L 6729402 3` UTR dikar - chr3L_4_6725001 chr3L_6725001 RAL-229_75b 544 chr3L 6816352 6816373 chr3L 6816451 6816472 5 99 1.5 0.0 0.8 2.8 120 chr3L 6816352 intergenic not near genes chr3L 6816412 intergenic not near genes chr3L 6816472 intergenic not near genes chr3L_5_6815001 chr3L_6815001 RAL-229_75b 545 chr3L 6855934 6855953 chr3L 6860718 6860736 Doc 5 4782 1.5 2.5 2.0 1.7 4802 chr3L 6855934 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860736 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-229_75b 546 chr3L 6887522 6887551 chr3L 6895011 6895043 roo 4 7491 2.5 1.0 1.8 1.4 7521 chr3L 6887522 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-229_75b 547 chr3L 6934348 6934363 chr3L 6934448 6934474 4 108 1.0 2.5 1.8 1.4 126 chr3L 6934348 exon CG14820 + chr3L 6934411 intron CG14820 + chr3L 6934474 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-229_75b 548 chr3L 7112589 7112620 chr3L 7112676 7112707 5 86 2.0 2.5 2.2 1.6 118 chr3L 7112589 intron form3 + chr3L 7112648 intron form3 + chr3L 7112707 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-229_75b 549 chr3L 7129418 7129444 chr3L 7129661 7129686 5 243 1.5 0.5 1.0 2.5 268 chr3L 7129418 3` UTR CG15829 + chr3L 7129552 3` UTR CG15829 + chr3L 7129686 intergenic CG15829 + chr3L_5_7125001 chr3L_7125001 RAL-229_75b 550 chr3L 7462960 7462990 chr3L 7463037 7463062 8 77 0.0 0.0 0.0 8.0 102 chr3L 7462960 intergenic not near genes chr3L 7463011 intergenic not near genes chr3L 7463062 intergenic not near genes chr3L_8_7460001 chr3L_7460001 RAL-229_75b 551 chr3L 7464867 7464880 chr3L 7464944 7464944 4 70 1.5 0.5 1.0 2.0 77 chr3L 7464867 intergenic not near genes chr3L 7464906 intergenic not near genes chr3L 7464944 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-229_75b 552 chr3L 7480052 7480073 chr3L 7480141 7480162 7 89 0.5 2.5 1.5 2.8 110 chr3L 7480052 intergenic not near genes chr3L 7480107 intergenic not near genes chr3L 7480162 intergenic not near genes chr3L_7_7480001 chr3L_7480001 RAL-229_75b 553 chr3L 7572054 7572085 chr3L 7572146 7572176 5 92 1.0 0.5 0.8 2.8 122 chr3L 7572054 intergenic not near genes chr3L 7572115 intergenic not near genes chr3L 7572176 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-229_75b 554 chr3L 7591152 7591167 chr3L 7591243 7591256 4 89 1.5 1.5 1.5 1.6 104 chr3L 7591152 intergenic CG7716 - chr3L 7591204 intergenic CG7716 - chr3L 7591256 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-229_75b 555 chr3L 7744709 7744737 chr3L 7744800 7744805 4 86 2.5 1.0 1.8 1.4 96 chr3L 7744709 intron CG32373 + chr3L 7744757 intron CG32373 + chr3L 7744805 intron CG32373 + chr3L_4_7740001 chr3L_7740001 RAL-229_75b 556 chr3L 7749470 7749471 chr3L 11777678 11777678 8 4028208 6.5 15.5 11.0 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_9760001 chr3L_9760001 RAL-229_75b 557 chr3L 7793716 7793744 chr3L 7800766 7800793 297 7 7050 0.0 2.0 1.0 3.5 7077 chr3L 7793716 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-229_75b 558 chr3L 7886514 7886544 chr3L 7889031 7889061 Stalker4 6 2514 0.5 2.5 1.5 2.4 2547 chr3L 7886514 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889061 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-229_75b 559 chr3L 7985375 7985400 chr3L 7987697 7987720 NOF 5 2323 1.0 3.5 2.2 1.6 2345 chr3L 7985375 intron nmo + chr3L 7986548 intron nmo + chr3L 7987720 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-229_75b 560 chr3L 8452368 8452385 chr3L 8452444 8452461 4 76 2.0 2.5 2.2 1.2 93 chr3L 8452368 intron Gug + chr3L 8452414 intron Gug + chr3L 8452461 intron Gug + chr3L_4_8450001 chr3L_8450001 RAL-229_75b 561 chr3L 8551744 8551771 chr3L 8551827 8551854 5 83 3.0 3.5 3.2 1.2 110 chr3L 8551744 intron rhea + chr3L 8551799 intron rhea + chr3L 8551854 intron rhea + chr3L_5_8550001 chr3L_8550001 RAL-229_75b 562 chr3L 8643577 8643606 chr3L 8643653 8643682 7 76 0.0 1.0 0.5 4.7 105 chr3L 8643577 3` UTR Cpr66D + chr3L 8643630 intergenic Cpr66D + chr3L 8643682 intergenic Cpr66D + chr3L_7_8640001 chr3L_8640001 RAL-229_75b 563 chr3L 8826781 8826804 chr3L 8826899 8826922 6 118 1.5 0.0 0.8 3.3 141 chr3L 8826781 intergenic not near genes chr3L 8826852 intergenic not near genes chr3L 8826922 intergenic not near genes chr3L_6_8825001 chr3L_8825001 RAL-229_75b 564 chr3L 8834135 8834140 chr3L 8834217 8834237 4 96 1.0 1.5 1.2 1.8 102 chr3L 8834135 intron dally + chr3L 8834186 intron dally + chr3L 8834237 intron dally + chr3L_4_8830001 chr3L_8830001 RAL-229_75b 565 chr3L 9061131 9061159 chr3L 9061239 9061263 4 106 1.5 2.0 1.8 1.4 132 chr3L 9061131 intron Argk - chr3L 9061197 intron Argk - chr3L 9061263 intron Argk - chr3L_4_9060001 chr3L_9060001 RAL-229_75b 566 chr3L 9076933 9076955 chr3L 9084493 9084515 412 8 7559 5.0 5.5 5.2 1.3 7582 chr3L 9076933 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084515 exon Tequila + chr3L_8_9080001 chr3L_9080001 RAL-229_75b 567 chr3L 9130574 9130582 chr3L 9134319 9134343 412 4 3756 1.5 4.0 2.8 1.1 3769 chr3L 9130574 intergenic bol - chr3L 9132458 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-229_75b 568 chr3L 9164701 9164728 chr3L 9166164 9166195 hobo 4 1466 0.5 1.0 0.8 2.2 1494 chr3L 9164701 intron Rdl - chr3L 9165448 intron Rdl - chr3L 9166195 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-229_75b 569 chr3L 9219242 9219272 chr3L 9219914 9219944 jockey 7 666 3.5 2.5 3.0 1.8 702 chr3L 9219242 intergenic not near genes chr3L 9219593 intergenic not near genes chr3L 9219944 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-229_75b 570 chr3L 9443513 9443535 chr3L 9445304 9445326 S-element 7 1790 2.0 0.0 1.0 3.5 1813 chr3L 9443513 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445326 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-229_75b 571 chr3L 9501722 9501733 chr3L 9502208 9502219 roo 4 486 1.0 2.5 1.8 1.4 497 chr3L 9501722 intron path - chr3L 9501970 intron path - chr3L 9502219 intron path - chr3L_4_9500001 chr3L_9500001 RAL-229_75b 572 chr3L 9575908 9575938 chr3L 9580986 9581016 jockey 5 5076 4.0 1.5 2.8 1.3 5108 chr3L 9575908 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-229_75b 573 chr3L 9918794 9918822 chr3L 9919004 9919030 10 210 4.0 6.0 5.0 1.7 236 chr3L 9918794 intron CG34356 + chr3L 9918912 intron CG34356 + chr3L 9919030 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-229_75b 574 chr3L 10052897 10052922 chr3L 10052997 10053010 4 97 4.5 2.5 3.5 0.9 113 chr3L 10052897 intron dpr6 + chr3L 10052954 intron dpr6 + chr3L 10053010 intron dpr6 + chr3L_4_10050001 chr3L_10050001 RAL-229_75b 575 chr3L 10219779 10219805 chr3L 10220291 10220317 6 511 5.0 3.5 4.2 1.2 538 chr3L 10219779 exon CG32055 - chr3L 10220048 exon CG32055 - chr3L 10220317 intergenic CG32055 -,scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-229_75b 576 chr3L 10308746 10308771 chr3L 10308822 10308847 7 74 1.5 2.0 1.8 2.5 101 chr3L 10308746 intergenic not near genes chr3L 10308796 intergenic not near genes chr3L 10308847 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-229_75b 577 chr3L 10310356 10310378 chr3L 10310452 10310474 4 95 0.5 2.0 1.2 1.8 118 chr3L 10310356 intergenic not near genes chr3L 10310415 intergenic not near genes chr3L 10310474 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-229_75b 578 chr3L 10314127 10314157 chr3L 10314213 10314242 6 84 1.0 2.5 1.8 2.1 115 chr3L 10314127 intergenic not near genes chr3L 10314184 intergenic not near genes chr3L 10314242 intergenic not near genes chr3L_6_10310001 chr3L_10310001 RAL-229_75b 579 chr3L 10333018 10333041 chr3L 10333158 10333181 5 139 3.0 0.5 1.8 1.8 163 chr3L 10333018 intergenic not near genes chr3L 10333100 intergenic not near genes chr3L 10333181 intergenic not near genes chr3L_5_10330001 chr3L_10330001 RAL-229_75b 580 chr3L 10414945 10414975 chr3L 10417315 10417347 Doc 4 2371 0.5 2.0 1.2 1.8 2402 chr3L 10414945 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-229_75b 581 chr3L 10417574 10417598 chr3L 10417644 10417675 6 74 5.0 2.0 3.5 1.3 101 chr3L 10417574 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417675 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-229_75b 582 chr3L 10584279 10584301 chr3L 10584366 10584383 4 86 0.5 1.5 1.0 2.0 104 chr3L 10584279 intron A2bp1 + chr3L 10584331 intron A2bp1 + chr3L 10584383 intron A2bp1 + chr3L_4_10580001 chr3L_10580001 RAL-229_75b 583 chr3L 10621855 10621874 chr3L 10621941 10621961 4 86 2.0 2.0 2.0 1.3 106 chr3L 10621855 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621961 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-229_75b 584 chr3L 10658107 10658208 chr3L 10658184 10658314 6 115 0.0 0.0 0.0 6.0 207 chr3L 10658107 intron CG32066 - chr3L 10658210 intron CG32066 - chr3L 10658314 intron CG32066 - chr3L_6_10655001 chr3L_10655001 RAL-229_75b 585 chr3L 10868804 10868817 chr3L 10868886 10868895 4 81 0.0 3.0 1.5 1.6 91 chr3L 10868804 intron tna + chr3L 10868850 intron tna + chr3L 10868895 intron tna + chr3L_4_10865001 chr3L_10865001 RAL-229_75b 586 chr3L 10926285 10926319 chr3L 10926369 10926403 7 83 1.0 1.0 1.0 3.5 118 chr3L 10926285 intergenic not near genes chr3L 10926344 intergenic not near genes chr3L 10926403 intergenic not near genes chr3L_7_10925001 chr3L_10925001 RAL-229_75b 587 chr3L 10957015 10957020 chr3L 10957090 10957096 4 76 1.5 2.5 2.0 1.3 81 chr3L 10957015 intergenic not near genes chr3L 10957056 intergenic not near genes chr3L 10957096 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-229_75b 588 chr3L 11127945 11127958 chr3L 11128035 11128061 4 100 1.0 2.0 1.5 1.6 116 chr3L 11127945 intron CG42575 + chr3L 11128003 intron CG42575 + chr3L 11128061 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-229_75b 589 chr3L 11224549 11224567 chr3L 11224671 11224688 4 122 0.0 0.0 0.0 4.0 139 chr3L 11224549 intron CG42671 + chr3L 11224618 intron CG42671 + chr3L 11224688 intron CG42671 + chr3L_4_11220001 chr3L_11220001 RAL-229_75b 590 chr3L 11306021 11306026 chr3L 11306130 11306137 4 115 0.5 4.5 2.5 1.1 116 chr3L 11306021 intergenic not near genes chr3L 11306079 intergenic not near genes chr3L 11306137 intergenic not near genes chr3L_4_11305001 chr3L_11305001 RAL-229_75b 591 chr3L 11528230 11528249 chr3L 11528311 11528330 4 81 2.5 1.5 2.0 1.3 100 chr3L 11528230 intron Mob2 - chr3L 11528280 intron Mob2 - chr3L 11528330 intron Mob2 - chr3L_4_11525001 chr3L_11525001 RAL-229_75b 592 chr3L 11546282 11546313 chr3L 11546389 11546421 8 108 3.0 0.0 1.5 3.2 139 chr3L 11546282 intron Mob2 - chr3L 11546352 intron Mob2 - chr3L 11546421 intron Mob2 - chr3L_8_11545001 chr3L_11545001 RAL-229_75b 593 chr3L 11588732 11588757 chr3L 11588888 11588913 7 156 1.0 3.5 2.2 2.2 181 chr3L 11588732 intergenic not near genes chr3L 11588822 intergenic not near genes chr3L 11588913 intergenic not near genes chr3L_7_11585001 chr3L_11585001 RAL-229_75b 594 chr3L 11670410 11670439 chr3L 11670589 11670612 8 178 2.0 3.0 2.5 2.3 202 chr3L 11670410 intron CG32085 - chr3L 11670511 intron CG32085 - chr3L 11670612 intron CG32085 - chr3L_8_11670001 chr3L_11670001 RAL-229_75b 595 chr3L 11676804 11676830 chr3L 11676879 11676912 6 80 1.0 1.5 1.2 2.7 108 chr3L 11676804 intron CG32085 - chr3L 11676858 intron CG32085 - chr3L 11676912 intron CG32085 - chr3L_6_11675001 chr3L_11675001 RAL-229_75b 596 chr3L 11744023 11744035 chr3L 11744130 11744141 4 107 1.5 0.0 0.8 2.2 118 chr3L 11744023 exon CG6024 - chr3L 11744082 intron CG6024 - chr3L 11744141 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-229_75b 597 chr3L 7749469 7749471 chr3L 11777678 11777678 4 4028208 6.5 15.5 11.0 0.3 4028209 chr3L 7749469 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-229_75b 598 chr3L 11846405 11846418 chr3L 11846513 11846526 4 107 0.0 3.0 1.5 1.6 121 chr3L 11846405 intergenic not near genes chr3L 11846466 intergenic not near genes chr3L 11846526 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-229_75b 599 chr3L 11850142 11850165 chr3L 11850237 11850260 6 95 1.5 0.0 0.8 3.3 118 chr3L 11850142 intergenic not near genes chr3L 11850201 intergenic CG44837 - chr3L 11850260 intergenic CG44837 - chr3L_6_11850001 chr3L_11850001 RAL-229_75b 600 chr3L 11864557 11864572 chr3L 11865852 11865860 pogo 5 1293 1.5 3.0 2.2 1.6 1303 chr3L 11864557 intron CG44837 - chr3L 11865208 intron CG44837 - chr3L 11865860 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-229_75b 601 chr3L 11910755 11910784 chr3L 11910836 11910865 9 80 1.0 0.5 0.8 5.0 110 chr3L 11910755 intron CG44837 - chr3L 11910810 intron CG44837 - chr3L 11910865 intron CG44837 - chr3L_9_11910001 chr3L_11910001 RAL-229_75b 602 chr3L 12013912 12013938 chr3L 12014003 12014021 6 89 3.5 1.5 2.5 1.7 109 chr3L 12013912 intron rols - chr3L 12013966 intron rols - chr3L 12014021 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-229_75b 603 chr3L 12174338 12174358 chr3L 12174699 12174722 6 363 1.5 2.5 2.0 2.0 384 chr3L 12174338 intron Rh7 - chr3L 12174530 intron Rh7 - chr3L 12174722 intron Rh7 - chr3L_6_12170001 chr3L_12170001 RAL-229_75b 604 chr3L 12197399 12197420 chr3L 12197479 12197500 6 78 0.5 4.5 2.5 1.7 101 chr3L 12197399 intergenic CG11529 + chr3L 12197450 intergenic CG11529 + chr3L 12197500 intergenic CG11529 + chr3L_6_12195001 chr3L_12195001 RAL-229_75b 605 chr3L 12304093 12304116 chr3L 12304167 12304179 8 72 2.0 2.0 2.0 2.7 86 chr3L 12304093 intergenic not near genes chr3L 12304136 intergenic not near genes chr3L 12304179 intergenic not near genes chr3L_8_12300001 chr3L_12300001 RAL-229_75b 606 chr3L 12788429 12788435 chr3L 12788548 12788555 4 120 2.0 1.0 1.5 1.6 126 chr3L 12788429 intron Atg1 - chr3L 12788492 intron Atg1 - chr3L 12788555 exon Atg1 - chr3L_4_12785001 chr3L_12785001 RAL-229_75b 607 chr3L 12801981 12802007 chr3L 12802057 12802081 6 74 1.5 1.5 1.5 2.4 100 chr3L 12801981 intron Atg1 - chr3L 12802031 intron Atg1 - chr3L 12802081 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-229_75b 608 chr3L 12874925 12874960 chr3L 12877216 12877252 jockey 9 2290 1.0 1.0 1.0 4.5 2327 chr3L 12874925 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877252 intergenic not near genes chr3L_9_12875001 chr3L_12875001 RAL-229_75b 609 chr3L 12894798 12894820 chr3L 12894876 12894897 7 76 5.0 3.5 4.2 1.3 99 chr3L 12894798 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894897 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-229_75b 610 chr3L 12919283 12919306 chr3L 12924756 12924778 Rt1c 6 5470 3.5 0.5 2.0 2.0 5495 chr3L 12919283 intergenic not near genes chr3L 12922030 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-229_75b 611 chr3L 12966984 12967001 chr3L 12967614 12967631 5 630 1.5 4.0 2.8 1.3 647 chr3L 12966984 exon Or69a - chr3L 12967308 exon Or69a - chr3L 12967631 exon Or69a - chr3L_5_12965001 chr3L_12965001 RAL-229_75b 612 chr3L 13194067 13194100 chr3L 13194146 13194179 10 75 2.0 1.0 1.5 4.0 112 chr3L 13194067 intergenic not near genes chr3L 13194123 intergenic not near genes chr3L 13194179 intergenic not near genes chr3L_10_13190001 chr3L_13190001 RAL-229_75b 613 chr3L 13206238 13206264 chr3L 13206319 13206346 4 80 1.5 5.0 3.2 1.0 108 chr3L 13206238 intergenic not near genes chr3L 13206292 intergenic not near genes chr3L 13206346 intergenic not near genes chr3L_4_13205001 chr3L_13205001 RAL-229_75b 614 chr3L 13243217 13243248 chr3L 13243329 13243360 10 111 3.5 1.0 2.2 3.1 143 chr3L 13243217 intron caps + chr3L 13243288 intron caps + chr3L 13243360 intron caps + chr3L_10_13240001 chr3L_13240001 RAL-229_75b 615 chr3L 13372951 13372969 chr3L 13373039 13373050 5 86 2.5 3.5 3.0 1.2 99 chr3L 13372951 intergenic not near genes chr3L 13373000 intergenic not near genes chr3L 13373050 intergenic not near genes chr3L_5_13370001 chr3L_13370001 RAL-229_75b 616 chr3L 13400531 13400536 chr3L 13400606 13400612 4 76 1.5 0.5 1.0 2.0 81 chr3L 13400531 intron sens - chr3L 13400572 intron sens - chr3L 13400612 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-229_75b 617 chr3L 13535766 13535938 chr3L 13535851 13536007 6 75 0.5 0.5 0.5 4.0 241 chr3L 13535766 intergenic not near genes chr3L 13535886 intergenic not near genes chr3L 13536007 intergenic not near genes chr3L_6_13535001 chr3L_13535001 RAL-229_75b 618 chr3L 13617538 13617556 chr3L 13617616 13617634 5 78 2.0 0.5 1.2 2.3 96 chr3L 13617538 intron bru-3 - chr3L 13617586 intron bru-3 - chr3L 13617634 intron bru-3 - chr3L_5_13615001 chr3L_13615001 RAL-229_75b 619 chr3L 14185166 14185186 chr3L 14185241 14185255 4 74 2.0 3.0 2.5 1.1 89 chr3L 14185166 intergenic not near genes chr3L 14185210 intergenic not near genes chr3L 14185255 intergenic not near genes chr3L_4_14185001 chr3L_14185001 RAL-229_75b 620 chr3L 14245573 14245594 chr3L 14245660 14245683 1360 4 90 2.5 1.0 1.8 1.4 110 chr3L 14245573 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-229_75b 621 chr3L 14267366 14267398 chr3L 14271806 14271815 F-element 4 4431 1.5 0.5 1.0 2.0 4449 chr3L 14267366 intergenic not near genes chr3L 14269590 intergenic not near genes chr3L 14271815 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-229_75b 622 chr3L 14383725 14383754 chr3L 14389639 14389668 5 5914 15.0 16.0 15.5 0.3 5943 chr3L 14383725 intergenic CG43120 + chr3L 14386696 intergenic not near genes chr3L 14389668 intergenic not near genes chr3L_5_14385001 chr3L_14385001 RAL-229_75b 623 chr3L 14468449 14468470 chr3L 14473655 14473676 copia 5 5206 4.0 0.5 2.2 1.6 5227 chr3L 14468449 intron bbg - chr3L 14471062 intron bbg - chr3L 14473676 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-229_75b 624 chr3L 14504901 14504924 chr3L 14505117 14505135 7 215 1.0 1.5 1.2 3.2 234 chr3L 14504901 intron bbg - chr3L 14505018 intron bbg - chr3L 14505135 intron bbg - chr3L_7_14505001 chr3L_14505001 RAL-229_75b 625 chr3L 14541728 14541749 chr3L 14541818 14541839 5 90 0.5 1.0 0.8 2.8 111 chr3L 14541728 3` UTR CG9238 - chr3L 14541784 3` UTR CG9238 - chr3L 14541839 3` UTR CG9238 - chr3L_5_14540001 chr3L_14540001 RAL-229_75b 626 chr3L 14652647 14652667 chr3L 14652726 14652746 4 79 2.0 4.0 3.0 1.0 99 chr3L 14652647 intron dlp + chr3L 14652696 intron dlp + chr3L 14652746 intron dlp + chr3L_4_14650001 chr3L_14650001 RAL-229_75b 627 chr3L 14721182 14721209 chr3L 14723023 14723052 Rt1c 5 1840 2.5 0.5 1.5 2.0 1870 chr3L 14721182 intron ome + chr3L 14722117 intron ome + chr3L 14723052 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-229_75b 628 chr3L 14725604 14725628 chr3L 14728587 14728621 Doc 4 2990 1.5 1.5 1.5 1.6 3017 chr3L 14725604 intron ome + chr3L 14727112 intron ome + chr3L 14728621 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-229_75b 629 chr3L 14741146 14741163 chr3L 14741224 14741238 7 77 1.5 2.5 2.0 2.3 92 chr3L 14741146 intron ome + chr3L 14741192 intron ome + chr3L 14741238 intron ome + chr3L_7_14740001 chr3L_14740001 RAL-229_75b 630 chr3L 14855581 14855613 chr3L 14855669 14855701 10 88 3.5 3.0 3.2 2.4 120 chr3L 14855581 intron CG17839 + chr3L 14855641 intron CG17839 + chr3L 14855701 intron CG17839 + chr3L_10_14855001 chr3L_14855001 RAL-229_75b 631 chr3L 14922105 14922124 chr3L 14922211 14922225 5 103 2.5 0.0 1.2 2.3 120 chr3L 14922105 intron DCX-EMAP + chr3L 14922165 intron DCX-EMAP + chr3L 14922225 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-229_75b 632 chr3L 14993279 14993291 chr3L 14993353 14993363 6 75 1.5 2.5 2.0 2.0 84 chr3L 14993279 intron Zip71B + chr3L 14993321 intron Zip71B + chr3L 14993363 intron Zip71B + chr3L_6_14990001 chr3L_14990001 RAL-229_75b 633 chr3L 14993293 14993298 chr3L 14993351 14993376 5 69 0.5 2.0 1.2 2.3 83 chr3L 14993293 intron Zip71B + chr3L 14993334 intron Zip71B + chr3L 14993376 intron Zip71B + chr3L_5_14990001 chr3L_14990001 RAL-229_75b 634 chr3L 15035549 15035577 chr3L 15036479 15036507 7 930 2.0 3.0 2.5 2.0 958 chr3L 15035549 intron Sytbeta - chr3L 15036028 intron Sytbeta - chr3L 15036507 intron Sytbeta - chr3L_7_15035001 chr3L_15035001 RAL-229_75b 635 chr3L 15836047 15836068 chr3L 15836184 15836205 10 137 29.5 28.5 29.0 0.3 158 chr3L 15836047 3` UTR CG15715 - chr3L 15836126 3` UTR CG15715 - chr3L 15836205 exon CG15715 - chr3L_10_15835001 chr3L_15835001 RAL-229_75b 636 chr3L 16184107 16184118 chr3L 16188925 16188925 X-element 4 4815 2.5 3.0 2.8 1.1 4818 chr3L 16184107 intergenic not near genes chr3L 16186516 intergenic not near genes chr3L 16188925 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-229_75b 637 chr3L 16198387 16198414 chr3L 16198471 16198498 4 82 0.5 1.5 1.0 2.0 111 chr3L 16198387 intron CG33687 + chr3L 16198442 exon CG33687 + chr3L 16198498 exon CG33687 + chr3L_4_16195001 chr3L_16195001 RAL-229_75b 638 chr3L 16450024 16450048 chr3L 16450109 16450133 4 85 1.0 0.0 0.5 2.7 109 chr3L 16450024 intron,intron CG33158 +,dsx-c73A - chr3L 16450078 intron,intron CG33158 +,dsx-c73A - chr3L 16450133 intron,intron CG33158 +,dsx-c73A - chr3L_4_16450001 chr3L_16450001 RAL-229_75b 639 chr3L 16457530 16457557 chr3L 16457625 16457652 5 95 0.0 2.5 1.2 2.3 122 chr3L 16457530 intron CG33158 + chr3L 16457591 intron CG33158 + chr3L 16457652 intron CG33158 + chr3L_5_16455001 chr3L_16455001 RAL-229_75b 640 chr3L 16493974 16494012 chr3L 16494491 16494529 jockey 7 516 3.5 0.5 2.0 2.3 555 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-229_75b 641 chr3L 16533564 16533586 chr3L 16533675 16533695 5 111 1.5 1.5 1.5 2.0 131 chr3L 16533564 intron CG43373 - chr3L 16533630 intron CG43373 - chr3L 16533695 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-229_75b 642 chr3L 16560328 16560332 chr3L 16560389 16560417 4 76 0.0 0.5 0.2 3.3 89 chr3L 16560328 intergenic not near genes chr3L 16560372 intergenic not near genes chr3L 16560417 intergenic not near genes chr3L_4_16560001 chr3L_16560001 RAL-229_75b 643 chr3L 16652684 16652707 chr3L 16652763 16652786 4 79 1.5 0.0 0.8 2.2 102 chr3L 16652684 intron Baldspot - chr3L 16652735 intron Baldspot - chr3L 16652786 intron Baldspot - chr3L_4_16650001 chr3L_16650001 RAL-229_75b 644 chr3L 16698254 16698275 chr3L 16703905 16703924 4 5649 1.5 2.0 1.8 1.4 5670 chr3L 16698254 intron,intron Lasp -,CG43954 - chr3L 16701089 intron,intron Lasp -,CG43954 - chr3L 16703924 intron,intron Lasp -,CG43954 - chr3L_4_16700001 chr3L_16700001 RAL-229_75b 645 chr3L 16704156 16704172 chr3L 16704245 16704261 4 89 0.5 5.0 2.8 1.1 105 chr3L 16704156 intron,intron Lasp -,CG43954 - chr3L 16704208 intron,intron Lasp -,CG43954 - chr3L 16704261 intron,intron Lasp -,CG43954 - chr3L_4_16700001 chr3L_16700001 RAL-229_75b 646 chr3L 16771531 16771548 chr3L 16771613 16771630 6 82 2.5 2.0 2.2 1.9 99 chr3L 16771531 intron Nrt + chr3L 16771580 intron Nrt + chr3L 16771630 intron Nrt + chr3L_6_16770001 chr3L_16770001 RAL-229_75b 647 chr3L 16772502 16772512 chr3L 16772591 16772602 4 90 3.5 2.5 3.0 1.0 100 chr3L 16772502 intron Nrt + chr3L 16772552 intron Nrt + chr3L 16772602 intron Nrt + chr3L_4_16770001 chr3L_16770001 RAL-229_75b 648 chr3L 16804187 16804211 chr3L 16807504 16807528 4 3316 13.5 15.5 14.5 0.3 3341 chr3L 16804187 intron CG9674 - chr3L 16805858 intron,intron CG9674 -,nudC + chr3L 16807528 intron,intron CG9674 -,nudC + chr3L_4_16805001 chr3L_16805001 RAL-229_75b 649 chr3L 16818748 16818774 chr3L 16818824 16818839 9 74 0.5 1.5 1.0 4.5 91 chr3L 16818748 intron,intron nudC +,CG13024 - chr3L 16818794 intron,intron nudC +,CG13024 - chr3L 16818839 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-229_75b 650 chr3L 16869577 16869601 chr3L 16869660 16869684 9 82 2.0 1.5 1.8 3.2 107 chr3L 16869577 intron Lmpt + chr3L 16869630 intron Lmpt + chr3L 16869684 intron Lmpt + chr3L_9_16865001 chr3L_16865001 RAL-229_75b 651 chr3L 16945734 16945758 chr3L 16954879 16954901 roo 11 9144 3.5 0.5 2.0 3.7 9167 chr3L 16945734 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954901 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-229_75b 652 chr3L 17085006 17085034 chr3L 17094154 17094183 roo 4 9149 4.0 1.5 2.8 1.1 9177 chr3L 17085006 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-229_75b 653 chr3L 17272250 17272262 chr3L 17272383 17272390 5 132 0.5 4.0 2.2 1.6 140 chr3L 17272250 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272390 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-229_75b 654 chr3L 17495232 17495255 chr3L 17495345 17495370 4 113 2.0 1.5 1.8 1.4 138 chr3L 17495232 intron,exon Oatp74D +,edin + chr3L 17495301 intron Oatp74D + chr3L 17495370 intron Oatp74D + chr3L_4_17495001 chr3L_17495001 RAL-229_75b 655 chr3L 17510744 17510764 chr3L 17510828 17510848 6 83 0.5 1.5 1.0 3.0 104 chr3L 17510744 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-229_75b 656 chr3L 17535814 17535843 chr3L 17535928 17535952 8 110 1.0 1.0 1.0 4.0 138 chr3L 17535814 intron Nedd4 + chr3L 17535883 intron Nedd4 + chr3L 17535952 intron Nedd4 + chr3L_8_17535001 chr3L_17535001 RAL-229_75b 657 chr3L 17789843 17789874 chr3L 17789919 17789950 7 76 0.5 2.5 1.5 2.8 107 chr3L 17789843 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789950 intergenic not near genes chr3L_7_17785001 chr3L_17785001 RAL-229_75b 658 chr3L 17837627 17837653 chr3L 17837713 17837740 6 87 1.5 4.0 2.8 1.6 113 chr3L 17837627 exon Grd + chr3L 17837684 intron Grd + chr3L 17837740 intron Grd + chr3L_6_17835001 chr3L_17835001 RAL-229_75b 659 chr3L 18034699 18034709 chr3L 18034779 18034792 4 82 5.0 9.0 7.0 0.5 93 chr3L 18034699 intron Eip75B - chr3L 18034746 intron Eip75B - chr3L 18034792 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-229_75b 660 chr3L 18221099 18221124 chr3L 18221179 18221199 5 78 0.0 0.0 0.0 5.0 100 chr3L 18221099 intergenic not near genes chr3L 18221149 intergenic not near genes chr3L 18221199 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-229_75b 661 chr3L 18223177 18223186 chr3L 18223260 18223269 5 83 2.5 0.0 1.2 2.3 92 chr3L 18223177 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223269 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-229_75b 662 chr3L 18408732 18408761 chr3L 18408818 18408847 5 86 1.0 0.5 0.8 2.8 115 chr3L 18408732 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408847 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-229_75b 663 chr3L 9013689 9013695 chr3L 18417066 18417066 6 9403375 14.0 12.0 13.0 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-229_75b 664 chr3L 18456273 18456292 chr3L 18456361 18456361 4 83 3.5 1.0 2.2 1.2 88 chr3L 18456273 intergenic CR44670 - chr3L 18456317 intergenic CR44670 - chr3L 18456361 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-229_75b 665 chr3L 18546703 18546737 chr3L 18546796 18546831 6 94 0.5 1.5 1.0 3.0 128 chr3L 18546703 intergenic not near genes chr3L 18546767 intergenic not near genes chr3L 18546831 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-229_75b 666 chr3L 18638587 18638609 chr3L 18638680 18638703 6 94 0.0 1.0 0.5 4.0 116 chr3L 18638587 intron MYPT-75D + chr3L 18638645 intron MYPT-75D + chr3L 18638703 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-229_75b 667 chr3L 18680460 18680492 chr3L 18680569 18680601 5 103 3.5 0.5 2.0 1.7 141 chr3L 18680460 exon CG34254 + chr3L 18680530 intron CG34254 + chr3L 18680601 exon CG34254 + chr3L_5_18680001 chr3L_18680001 RAL-229_75b 668 chr3L 18721773 18721804 chr3L 18721864 18721892 6 90 1.0 1.0 1.0 3.0 119 chr3L 18721773 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721892 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 RAL-229_75b 669 chr3L 18738665 18738698 chr3L 18738751 18738785 5 87 1.0 0.5 0.8 2.8 120 chr3L 18738665 intergenic not near genes chr3L 18738725 intergenic not near genes chr3L 18738785 intergenic not near genes chr3L_5_18735001 chr3L_18735001 RAL-229_75b 670 chr3L 18772406 18772439 chr3L 18781087 18781104 roo 11 8679 2.0 3.5 2.8 2.9 8698 chr3L 18772406 intron ftz-f1 - chr3L 18776755 intron ftz-f1 - chr3L 18781104 intron ftz-f1 - chr3L_11_18775001 chr3L_18775001 RAL-229_75b 671 chr3L 18969554 18969572 chr3L 18969630 18969648 6 75 2.5 1.0 1.8 2.1 94 chr3L 18969554 intergenic not near genes chr3L 18969601 intergenic not near genes chr3L 18969648 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-229_75b 672 chr3L 19008846 19008872 chr3L 19009184 19009209 jockey 8 337 3.0 3.5 3.2 1.9 363 chr3L 19008846 intron nkd - chr3L 19009028 intron nkd - chr3L 19009209 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-229_75b 673 chr3L 19082039 19082062 chr3L 19082140 19082164 5 101 0.5 1.5 1.0 2.5 125 chr3L 19082039 intron Mkp3 - chr3L 19082102 intron Mkp3 - chr3L 19082164 intron Mkp3 - chr3L_5_19080001 chr3L_19080001 RAL-229_75b 674 chr3L 19115645 19115672 chr3L 19115823 19115846 BS 5 174 6.0 3.0 4.5 0.9 201 chr3L 19115645 intron CG14082 - chr3L 19115746 intron CG14082 - chr3L 19115846 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-229_75b 675 chr3L 19117043 19117067 chr3L 19124489 19124513 mdg1 5 7446 3.0 3.0 3.0 1.2 7470 chr3L 19117043 intron CG14082 - chr3L 19120778 intron CG14082 - chr3L 19124513 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-229_75b 676 chr3L 19138569 19138586 chr3L 19138649 19138660 6 79 2.5 3.0 2.8 1.6 91 chr3L 19138569 intron CG14082 - chr3L 19138614 intron CG14082 - chr3L 19138660 intron CG14082 - chr3L_6_19135001 chr3L_19135001 RAL-229_75b 677 chr3L 19244119 19244127 chr3L 19244196 19244203 5 76 2.5 2.0 2.2 1.6 84 chr3L 19244119 intergenic not near genes chr3L 19244161 intergenic not near genes chr3L 19244203 intergenic not near genes chr3L_5_19240001 chr3L_19240001 RAL-229_75b 678 chr3L 19390724 19390735 chr3L 19390822 19390833 4 97 3.0 4.0 3.5 0.9 109 chr3L 19390724 intron CG32206 - chr3L 19390778 intron CG32206 - chr3L 19390833 intron CG32206 - chr3L_4_19390001 chr3L_19390001 RAL-229_75b 679 chr3L 19426749 19426772 chr3L 19426826 19426831 4 72 3.0 2.5 2.8 1.1 82 chr3L 19426749 intergenic not near genes chr3L 19426790 intergenic not near genes chr3L 19426831 intergenic not near genes chr3L_4_19425001 chr3L_19425001 RAL-229_75b 680 chr3L 19430414 19430432 chr3L 19430492 19430510 6 78 0.0 3.0 1.5 2.4 96 chr3L 19430414 intergenic not near genes chr3L 19430462 intergenic not near genes chr3L 19430510 intergenic not near genes chr3L_6_19430001 chr3L_19430001 RAL-229_75b 681 chr3L 19488476 19488494 chr3L 19488558 19488575 4 82 4.0 0.5 2.2 1.2 99 chr3L 19488476 intergenic pncr009:3L -,CG32212 + chr3L 19488526 intergenic pncr009:3L -,CG32212 + chr3L 19488575 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-229_75b 682 chr3L 19644948 19644971 chr3L 19645054 19645078 5 105 1.0 1.5 1.2 2.3 130 chr3L 19644948 intergenic not near genes chr3L 19645013 intergenic not near genes chr3L 19645078 intergenic not near genes chr3L_5_19645001 chr3L_19645001 RAL-229_75b 683 chr3L 19676087 19676101 chr3L 19676164 19676168 4 76 2.5 0.0 1.2 1.8 81 chr3L 19676087 intergenic not near genes chr3L 19676128 intergenic not near genes chr3L 19676168 intergenic not near genes chr3L_4_19675001 chr3L_19675001 RAL-229_75b 684 chr3L 19848511 19848534 chr3L 19857692 19857724 roo 5 9187 3.0 1.5 2.2 1.6 9213 chr3L 19848511 intron Papss + chr3L 19853118 intron Papss + chr3L 19857724 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-229_75b 685 chr3L 19861820 19861847 chr3L 19863608 19863633 S-element 6 1787 3.0 2.5 2.8 1.6 1813 chr3L 19861820 5` UTR CR45433 + chr3L 19862726 intergenic not near genes chr3L 19863633 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-229_75b 686 chr3L 20057560 20057587 chr3L 20057673 20057698 4 112 1.5 2.5 2.0 1.3 138 chr3L 20057560 intergenic not near genes chr3L 20057629 intergenic not near genes chr3L 20057698 intergenic not near genes chr3L_4_20055001 chr3L_20055001 RAL-229_75b 687 chr3L 20081752 20081769 chr3L 20081835 20081852 7 82 1.5 2.0 1.8 2.5 100 chr3L 20081752 intron sNPF-R - chr3L 20081802 intron sNPF-R - chr3L 20081852 intron sNPF-R - chr3L_7_20080001 chr3L_20080001 RAL-229_75b 688 chr3L 20113474 20113507 chr3L 20113569 20113602 4 93 0.5 2.0 1.2 1.8 128 chr3L 20113474 intergenic not near genes chr3L 20113538 intergenic not near genes chr3L 20113602 intergenic not near genes chr3L_4_20110001 chr3L_20110001 RAL-229_75b 689 chr3L 20423015 20423039 chr3L 20423227 20423240 5 212 2.0 1.5 1.8 1.8 225 chr3L 20423015 exon zye + chr3L 20423128 exon zye + chr3L 20423240 exon zye + chr3L_5_20420001 chr3L_20420001 RAL-229_75b 690 chr3L 20444820 20444853 chr3L 20444943 20444976 9 121 2.5 1.5 2.0 3.0 156 chr3L 20444820 intron CG5910 + chr3L 20444898 intron CG5910 + chr3L 20444976 intron CG5910 + chr3L_9_20440001 chr3L_20440001 RAL-229_75b 691 chr3L 20590065 20590094 chr3L 20590604 20590632 412 5 533 1.5 2.0 1.8 1.8 567 chr3L 20590065 intergenic not near genes chr3L 20590348 intergenic not near genes chr3L 20590632 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-229_75b 692 chr3L 20679318 20679326 chr3L 20679399 20679407 4 80 0.5 4.0 2.2 1.2 89 chr3L 20679318 intergenic not near genes chr3L 20679362 intergenic not near genes chr3L 20679407 intergenic not near genes chr3L_4_20675001 chr3L_20675001 RAL-229_75b 693 chr3L 20710763 20710792 chr3L 20710840 20710869 4 76 0.5 2.0 1.2 1.8 106 chr3L 20710763 intergenic not near genes chr3L 20710816 intergenic not near genes chr3L 20710869 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-229_75b 694 chr3L 20939318 20939337 chr3L 20939396 20939406 7 78 2.0 1.5 1.8 2.5 88 chr3L 20939318 intron fng - chr3L 20939362 intron fng - chr3L 20939406 intron fng - chr3L_7_20935001 chr3L_20935001 RAL-229_75b 695 chr3L 21014934 21014947 chr3L 21023400 21023408 Tirant 4 8470 1.0 2.5 1.8 1.4 8474 chr3L 21014934 intron skd - chr3L 21019171 intron skd - chr3L 21023408 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-229_75b 696 chr3L 21130572 21130598 chr3L 21130765 21130792 6 191 2.0 4.0 3.0 1.5 220 chr3L 21130572 intron ko - chr3L 21130682 intron ko - chr3L 21130792 intron ko - chr3L_6_21130001 chr3L_21130001 RAL-229_75b 697 chr3L 21151864 21151892 chr3L 21156948 21156976 flea 5 5083 1.5 1.5 1.5 2.0 5112 chr3L 21151864 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156976 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-229_75b 698 chr3L 21243747 21243775 chr3L 21251310 21251324 412 4 7557 1.5 4.0 2.8 1.1 7577 chr3L 21243747 intron Eip78C + chr3L 21247536 intron Eip78C + chr3L 21251324 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-229_75b 699 chr3L 21306158 21306170 chr3L 21315316 21315329 roo 4 9159 0.5 3.5 2.0 1.3 9171 chr3L 21306158 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310744 intron Pc - chr3L 21315329 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-229_75b 700 chr3L 21415142 21415165 chr3L 21415225 21415244 7 82 0.5 4.0 2.2 2.2 102 chr3L 21415142 intron rgn + chr3L 21415193 intron rgn + chr3L 21415244 intron rgn + chr3L_7_21415001 chr3L_21415001 RAL-229_75b 701 chr3L 21498833 21498860 chr3L 21500469 21500496 1360 8 1636 2.5 1.5 2.0 2.7 1663 chr3L 21498833 intron Glg1 - chr3L 21499664 intron Glg1 - chr3L 21500496 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-229_75b 702 chr3L 21836738 21836759 chr3L 21836821 21836835 5 82 0.0 1.5 0.8 2.8 97 chr3L 21836738 3` UTR P5CDh1 - chr3L 21836786 3` UTR P5CDh1 - chr3L 21836835 3` UTR P5CDh1 - chr3L_5_21835001 chr3L_21835001 RAL-229_75b 703 chr3L 21849503 21849527 chr3L 21849582 21849609 4 81 2.5 1.5 2.0 1.3 106 chr3L 21849503 intron mub + chr3L 21849556 intron mub + chr3L 21849609 intron mub + chr3L_4_21845001 chr3L_21845001 RAL-229_75b 704 chr3L 21852264 21852281 chr3L 21852350 21852374 4 91 3.5 0.5 2.0 1.3 110 chr3L 21852264 intron mub + chr3L 21852319 intron mub + chr3L 21852374 intron mub + chr3L_4_21850001 chr3L_21850001 RAL-229_75b 705 chr3L 21901035 21901045 chr3L 21901128 21901138 5 92 2.0 5.0 3.5 1.1 103 chr3L 21901035 intron mub + chr3L 21901086 intron mub + chr3L 21901138 intron mub + chr3L_5_21900001 chr3L_21900001 RAL-229_75b 706 chr3L 21952454 21952478 chr3L 21953197 21953221 transib1 5 742 2.0 1.5 1.8 1.8 767 chr3L 21952454 intergenic not near genes chr3L 21952838 intergenic not near genes chr3L 21953221 intergenic not near genes chr3L_5_21950001 chr3L_21950001 RAL-229_75b 707 chr3L 22016371 22016396 chr3L 22016487 22016511 7 113 3.5 0.5 2.0 2.3 140 chr3L 22016371 intergenic not near genes chr3L 22016441 intergenic not near genes chr3L 22016511 intergenic not near genes chr3L_7_22015001 chr3L_22015001 RAL-229_75b 708 chr3L 22020521 22020538 chr3L 22020621 22020638 4 97 1.5 6.5 4.0 0.8 117 chr3L 22020521 intergenic not near genes chr3L 22020580 intergenic not near genes chr3L 22020638 intergenic not near genes chr3L_4_22020001 chr3L_22020001 RAL-229_75b 709 chr3L 22033697 22033718 chr3L 22033775 22033795 4 78 0.5 1.5 1.0 2.0 98 chr3L 22033697 intergenic not near genes chr3L 22033746 intergenic not near genes chr3L 22033795 intergenic not near genes chr3L_4_22030001 chr3L_22030001 RAL-229_75b 710 chr3L 22046183 22046213 chr3L 22046286 22046301 6 100 1.0 1.0 1.0 3.0 118 chr3L 22046183 intron Oct-TyrR + chr3L 22046242 intron Oct-TyrR + chr3L 22046301 intron Oct-TyrR + chr3L_6_22045001 chr3L_22045001 RAL-229_75b 711 chr3L 22099674 22099705 chr3L 22105860 22105891 3S18 8 6186 2.0 0.0 1.0 4.0 6217 chr3L 22099674 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105891 intergenic not near genes chr3L_8_22100001 chr3L_22100001 RAL-229_75b 712 chr3L 22124946 22124978 chr3L 22125102 22125134 12 155 3.5 2.0 2.8 3.2 188 chr3L 22124946 intergenic not near genes chr3L 22125040 intergenic not near genes chr3L 22125134 intergenic not near genes chr3L_12_22125001 chr3L_22125001 RAL-229_75b 713 chr3L 22170024 22170059 chr3L 22170150 22170154 4 112 1.0 1.0 1.0 2.0 130 chr3L 22170024 intron olf413 + chr3L 22170089 intron olf413 + chr3L 22170154 intron olf413 + chr3L_4_22170001 chr3L_22170001 RAL-229_75b 714 chr3L 22361949 22361965 chr3L 22362023 22362042 5 76 6.5 4.0 5.2 0.8 93 chr3L 22361949 intron Ten-m - chr3L 22361996 intron Ten-m - chr3L 22362042 intron Ten-m - chr3L_5_22360001 chr3L_22360001 RAL-229_75b 715 chr3L 22577630 22577637 chr3L 22582417 22582425 Doc 5 4788 5.0 3.5 4.2 1.0 4795 chr3L 22577630 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582425 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-229_75b 716 chr3L 22617189 22617219 chr3L 22624641 22624671 blood 6 7449 0.5 2.0 1.2 2.7 7482 chr3L 22617189 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624671 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-229_75b 717 chr3L 22797329 22797361 chr3L 22797422 22797454 11 92 2.0 1.5 1.8 3.9 125 chr3L 22797329 3` UTR jim - chr3L 22797392 3` UTR jim - chr3L 22797454 3` UTR jim - chr3L_11_22795001 chr3L_22795001 RAL-229_75b 718 chr3L 22853463 22853720 chr3L 22853549 22853806 16 86 1.5 1.5 1.5 6.4 343 chr3L 22853463 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853806 5` UTR CR43426 + chr3L_16_22850001 chr3L_22850001 RAL-229_75b 719 chr3L 22865981 22865997 chr3L 22867114 22867124 Doc 6 1132 5.0 1.5 3.2 1.4 1143 chr3L 22865981 intron CG33170 + chr3L 22866552 intron CG33170 + chr3L 22867124 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-229_75b 720 chr3L 23008200 23008233 chr3L 23008276 23008304 7 75 1.5 1.0 1.2 3.2 104 chr3L 23008200 intron nrm + chr3L 23008252 intron nrm + chr3L 23008304 intron nrm + chr3L_7_23005001 chr3L_23005001 RAL-229_75b 721 chr3L 23042233 23042256 chr3L 23048982 23049005 gypsy6 9 6751 3.5 2.0 2.8 2.4 6772 chr3L 23042233 intergenic not near genes chr3L 23045619 intergenic not near genes chr3L 23049005 intergenic not near genes chr3L_9_23045001 chr3L_23045001 RAL-229_75b 722 chr3L 23062894 23062898 chr3L 25074004 25074005 Tirant 4 2011109 7.5 7.0 7.2 0.5 2011111 chr3L 23062894 intergenic not near genes chr3L 24068450 intergenic not near genes chr3L 25074005 intergenic not near genes chr3L_4_24065001 chr3L_24065001 RAL-229_75b 723 chr3L 23875527 23875554 chr3L 23875607 23875633 5 80 2.5 3.0 2.8 1.3 106 chr3L 23875527 intron CG40470 - chr3L 23875580 intron CG40470 - chr3L 23875633 intron CG40470 - chr3L_5_23875001 chr3L_23875001 RAL-229_75b 724 chr3L 25354048 25354076 chr3L 25354228 25354258 8 181 0.5 2.5 1.5 3.2 210 chr3L 25354048 intergenic not near genes chr3L 25354153 intergenic not near genes chr3L 25354258 intergenic not near genes chr3L_8_25350001 chr3L_25350001 RAL-229_75b 725 chr3L 27390688 27390710 chr3L 27390767 27390788 4 78 15.5 17.0 16.2 0.2 100 chr3L 27390688 intron Dbp80 + chr3L 27390738 intron Dbp80 + chr3L 27390788 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-229_75b 726 chr3R 2556893 2556910 chr3R 2557626 2557643 4 733 10.0 5.0 7.5 0.5 750 chr3R 2556893 intron CG41056 - chr3R 2557268 intron CG41056 - chr3R 2557643 intron CG41056 - chr3R_4_2555001 chr3R_2555001 RAL-229_75b 727 chr3R 4063818 4063831 chr3R 4069098 4069110 5 5279 3.0 10.0 6.5 0.7 5292 chr3R 4063818 intergenic not near genes chr3R 4066464 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-229_75b 728 chr3R 4408410 4408431 chr3R 4412714 4412732 Juan 7 4303 4.0 2.0 3.0 1.8 4322 chr3R 4408410 intron CG32944 - chr3R 4410571 intron CG32944 - chr3R 4412732 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-229_75b 729 chr3R 4609547 4609578 chr3R 4610710 4610742 1360 10 1163 1.5 4.0 2.8 2.6 1195 chr3R 4609547 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610742 intergenic not near genes chr3R_10_4610001 chr3R_4610001 RAL-229_75b 730 chr3R 4680718 4680728 chr3R 4680797 4680806 4 79 2.5 1.5 2.0 1.3 88 chr3R 4680718 intron CG43427 + chr3R 4680762 intron CG43427 + chr3R 4680806 5` UTR CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-229_75b 731 chr3R 4769166 4769186 chr3R 4769239 4769263 6 76 1.5 1.5 1.5 2.4 97 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-229_75b 732 chr3R 4861569 4861594 chr3R 4861650 4861656 5 76 1.5 4.5 3.0 1.2 87 chr3R 4861569 intron opa + chr3R 4861612 intron opa + chr3R 4861656 intron opa + chr3R_5_4860001 chr3R_4860001 RAL-229_75b 733 chr3R 4922346 4922360 chr3R 4922423 4922439 6 78 2.0 1.0 1.5 2.4 93 chr3R 4922346 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922439 intron Cdep + chr3R_6_4920001 chr3R_4920001 RAL-229_75b 734 chr3R 5045848 5045875 chr3R 5052949 5052977 HMS-Beagle 5 7102 2.5 2.5 2.5 1.4 7129 chr3R 5045848 intron CR43635 - chr3R 5049412 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-229_75b 735 chr3R 5081121 5081134 chr3R 5081228 5081240 5 106 0.5 7.0 3.8 1.0 119 chr3R 5081121 3` UTR corto - chr3R 5081180 3` UTR corto - chr3R 5081240 3` UTR corto - chr3R_5_5080001 chr3R_5080001 RAL-229_75b 736 chr3R 5158146 5158176 chr3R 5158239 5158269 7 92 1.0 2.0 1.5 2.8 123 chr3R 5158146 intron dpr16 + chr3R 5158208 intron dpr16 + chr3R 5158269 intron dpr16 + chr3R_7_5155001 chr3R_5155001 RAL-229_75b 737 chr3R 5191365 5191394 chr3R 5191641 5191673 8 282 12.5 16.0 14.2 0.5 308 chr3R 5191365 intron cno - chr3R 5191519 intron cno - chr3R 5191673 intron cno - chr3R_8_5190001 chr3R_5190001 RAL-229_75b 738 chr3R 5338400 5338422 chr3R 5343577 5343599 Rt1c 7 5177 1.5 4.0 2.8 1.8 5199 chr3R 5338400 intron mtd - chr3R 5341000 intron mtd - chr3R 5343599 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-229_75b 739 chr3R 5445962 5445989 chr3R 5452420 5452449 Burdock 8 6459 2.0 0.5 1.2 3.6 6487 chr3R 5445962 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452449 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-229_75b 740 chr3R 5506859 5506866 chr3R 5506971 5506998 4 127 3.5 0.5 2.0 1.3 139 chr3R 5506859 intergenic not near genes chr3R 5506928 intergenic not near genes chr3R 5506998 intergenic not near genes chr3R_4_5505001 chr3R_5505001 RAL-229_75b 741 chr3R 5712088 5712113 chr3R 5712169 5712201 8 86 1.5 2.0 1.8 2.9 113 chr3R 5712088 3` UTR plx + chr3R 5712144 3` UTR plx + chr3R 5712201 3` UTR plx + chr3R_8_5710001 chr3R_5710001 RAL-229_75b 742 chr3R 5772383 5772409 chr3R 5772541 5772567 6 157 3.0 1.5 2.2 1.9 184 chr3R 5772383 intron CG2082 - chr3R 5772475 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-229_75b 743 chr3R 5809120 5809134 chr3R 5809355 5809375 pogo 5 237 2.0 2.5 2.2 1.6 255 chr3R 5809120 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809375 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-229_75b 744 chr3R 5822383 5822407 chr3R 5823548 5823574 1360 6 1166 5.0 2.5 3.8 1.2 1191 chr3R 5822383 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823574 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-229_75b 745 chr3R 5927565 5927590 chr3R 5927805 5927808 pogo 8 237 2.5 3.0 2.8 2.1 243 chr3R 5927565 intron CG34113 - chr3R 5927686 intron CG34113 - chr3R 5927808 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-229_75b 746 chr3R 6006329 6006358 chr3R 6006414 6006443 12 85 1.0 2.0 1.5 4.8 114 chr3R 6006329 intron Rm62 - chr3R 6006386 intron Rm62 - chr3R 6006443 intron Rm62 - chr3R_12_6005001 chr3R_6005001 RAL-229_75b 747 chr3R 6015960 6015990 chr3R 6024441 6024471 Tirant 6 8480 1.5 1.5 1.5 2.4 8511 chr3R 6015960 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024471 intergenic not near genes chr3R_6_6020001 chr3R_6020001 RAL-229_75b 748 chr3R 6043640 6043669 chr3R 6043862 6043891 7 221 1.5 2.0 1.8 2.5 251 chr3R 6043640 intergenic not near genes chr3R 6043766 intergenic not near genes chr3R 6043891 intergenic not near genes chr3R_7_6040001 chr3R_6040001 RAL-229_75b 749 chr3R 6048445 6048477 chr3R 6048528 6048560 9 81 2.5 2.0 2.2 2.8 115 chr3R 6048445 intergenic not near genes chr3R 6048502 intergenic not near genes chr3R 6048560 intergenic not near genes chr3R_9_6045001 chr3R_6045001 RAL-229_75b 750 chr3R 6158507 6158542 chr3R 6167090 6167113 Tirant 6 8579 2.5 2.0 2.2 1.9 8606 chr3R 6158507 intergenic not near genes chr3R 6162810 intergenic not near genes chr3R 6167113 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-229_75b 751 chr3R 6191174 6191188 chr3R 6191254 6191268 4 80 5.5 1.5 3.5 0.9 94 chr3R 6191174 intron NPFR + chr3R 6191221 intron NPFR + chr3R 6191268 intron NPFR + chr3R_4_6190001 chr3R_6190001 RAL-229_75b 752 chr3R 6206286 6206316 chr3R 6206503 6206530 BS 4 216 1.0 2.5 1.8 1.4 244 chr3R 6206286 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206530 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-229_75b 753 chr3R 6496662 6496686 chr3R 6496749 6496753 6 84 0.5 0.5 0.5 4.0 91 chr3R 6496662 intergenic not near genes chr3R 6496708 intergenic not near genes chr3R 6496753 intergenic not near genes chr3R_6_6495001 chr3R_6495001 RAL-229_75b 754 chr3R 6510027 6510055 chr3R 6515108 6515122 jockey 4 5074 1.5 1.0 1.2 1.8 5095 chr3R 6510027 intergenic not near genes chr3R 6512574 intergenic not near genes chr3R 6515122 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-229_75b 755 chr3R 6610044 6610060 chr3R 6610195 6610212 6 151 3.0 2.0 2.5 1.7 168 chr3R 6610044 intergenic not near genes chr3R 6610128 intergenic not near genes chr3R 6610212 intergenic not near genes chr3R_6_6610001 chr3R_6610001 RAL-229_75b 756 chr3R 6621878 6621889 chr3R 6621970 6621981 4 92 4.5 1.0 2.8 1.1 103 chr3R 6621878 intergenic not near genes chr3R 6621930 intergenic not near genes chr3R 6621981 intergenic not near genes chr3R_4_6620001 chr3R_6620001 RAL-229_75b 757 chr3R 6639909 6639932 chr3R 6639987 6640010 7 78 4.0 0.0 2.0 2.3 101 chr3R 6639909 intergenic not near genes chr3R 6639960 intergenic not near genes chr3R 6640010 intergenic not near genes chr3R_7_6635001 chr3R_6635001 RAL-229_75b 758 chr3R 6655766 6655796 chr3R 6656038 6656064 6 271 1.5 1.5 1.5 2.4 298 chr3R 6655766 exon Taf1 + chr3R 6655915 3` UTR Taf1 + chr3R 6656064 intergenic Taf1 +,CG1307 - chr3R_6_6655001 chr3R_6655001 RAL-229_75b 759 chr3R 6663606 6663627 chr3R 6663686 6663706 6 78 3.0 3.0 3.0 1.5 100 chr3R 6663606 intron lab - chr3R 6663656 intron lab - chr3R 6663706 intron lab - chr3R_6_6660001 chr3R_6660001 RAL-229_75b 760 chr3R 6670573 6670603 chr3R 6670682 6670712 7 108 0.0 2.5 1.2 3.2 139 chr3R 6670573 intron lab - chr3R 6670642 intron lab - chr3R 6670712 intron lab - chr3R_7_6670001 chr3R_6670001 RAL-229_75b 761 chr3R 6737516 6737531 chr3R 6739286 6739303 Doc 5 1780 1.0 2.5 1.8 1.8 1787 chr3R 6737516 intron pb - chr3R 6738410 intron pb - chr3R 6739303 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-229_75b 762 chr3R 6958925 6958946 chr3R 6959136 6959157 7 211 4.0 3.0 3.5 1.6 232 chr3R 6958925 intron Antp - chr3R 6959041 intron Antp - chr3R 6959157 intron Antp - chr3R_7_6955001 chr3R_6955001 RAL-229_75b 763 chr3R 7092788 7092794 chr3R 7093352 7093358 4 564 4.5 2.0 3.2 1.0 570 chr3R 7092788 3` UTR CR43685 - chr3R 7093073 intron CR43685 - chr3R 7093358 3` UTR CR43685 - chr3R_4_7090001 chr3R_7090001 RAL-229_75b 764 chr3R 7092795 7092815 chr3R 7093345 7093379 11 562 1.0 1.5 1.2 5.0 584 chr3R 7092795 3` UTR CR43685 - chr3R 7093087 intron CR43685 - chr3R 7093379 3` UTR CR43685 - chr3R_11_7090001 chr3R_7090001 RAL-229_75b 765 chr3R 7103288 7103315 chr3R 7103364 7103391 12 75 3.5 2.5 3.0 3.0 103 chr3R 7103288 intron Alh - chr3R 7103340 intron Alh - chr3R 7103391 intron Alh - chr3R_12_7100001 chr3R_7100001 RAL-229_75b 766 chr3R 7729476 7729499 chr3R 7737414 7737420 Stalker2 4 7930 2.0 3.0 2.5 1.1 7944 chr3R 7729476 intergenic not near genes chr3R 7733448 intergenic not near genes chr3R 7737420 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-229_75b 767 chr3R 7809928 7809949 chr3R 7810007 7810028 8 79 0.0 4.0 2.0 2.7 100 chr3R 7809928 5` UTR CG2993 - chr3R 7809978 5` UTR CG2993 - chr3R 7810028 intergenic CG2993 - chr3R_8_7805001 chr3R_7805001 RAL-229_75b 768 chr3R 7973315 7973339 chr3R 7974377 7974400 1360 5 1062 0.5 0.0 0.2 4.2 1085 chr3R 7973315 intergenic not near genes chr3R 7973858 intergenic not near genes chr3R 7974400 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-229_75b 769 chr3R 8013890 8013910 chr3R 8022855 8022874 5 8964 9.0 14.5 11.8 0.4 8984 chr3R 8013890 exon Pbp95 + chr3R 8018382 exon CG2747 - chr3R 8022874 exon CG2747 - chr3R_5_8015001 chr3R_8015001 RAL-229_75b 770 chr3R 8049051 8049059 chr3R 8049624 8049633 5 574 7.0 2.5 4.8 0.9 582 chr3R 8049051 intron CG43060 + chr3R 8049342 intron,intron CG43060 +,CG43618 + chr3R 8049633 intron CG43060 + chr3R_5_8045001 chr3R_8045001 RAL-229_75b 771 chr3R 8090273 8090303 chr3R 8090450 8090470 8 176 0.5 1.5 1.0 4.0 197 chr3R 8090273 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090470 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 RAL-229_75b 772 chr3R 8101764 8101790 chr3R 8104847 8104857 G2 5 3080 1.5 0.5 1.0 2.5 3093 chr3R 8101764 exon CG7900 + chr3R 8103310 intron CG7900 + chr3R 8104857 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-229_75b 773 chr3R 8339246 8339247 chr3R 21907535 21907536 8 13568289 9.0 10.5 9.8 0.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-229_75b 774 chr3R 8375130 8375163 chr3R 8375214 8375247 16 80 2.5 4.0 3.2 3.8 117 chr3R 8375130 intron CG45263 - chr3R 8375188 intron CG45263 - chr3R 8375247 intron CG45263 - chr3R_16_8375001 chr3R_8375001 RAL-229_75b 775 chr3R 8403007 8403034 chr3R 8412173 8412200 roo 6 9166 3.0 2.5 2.8 1.6 9193 chr3R 8403007 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412200 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-229_75b 776 chr3R 8493631 8493662 chr3R 8493709 8493740 4 78 2.5 0.5 1.5 1.6 109 chr3R 8493631 intergenic not near genes chr3R 8493686 intergenic not near genes chr3R 8493740 intergenic not near genes chr3R_4_8490001 chr3R_8490001 RAL-229_75b 777 chr3R 8552382 8552402 chr3R 8552459 8552473 5 77 1.5 3.0 2.2 1.6 91 chr3R 8552382 intergenic Or85d + chr3R 8552428 intergenic Or85d + chr3R 8552473 intergenic Or85d + chr3R_5_8550001 chr3R_8550001 RAL-229_75b 778 chr3R 8570479 8570508 chr3R 8575112 8575139 HMS-Beagle 8 4632 4.0 1.5 2.8 2.1 4660 chr3R 8570479 intergenic not near genes chr3R 8572809 intergenic not near genes chr3R 8575139 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-229_75b 779 chr3R 8707363 8707381 chr3R 8709804 8709822 jockey 5 2441 2.5 1.0 1.8 1.8 2459 chr3R 8707363 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709822 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-229_75b 780 chr3R 9095700 9095720 chr3R 9096020 9096039 4 320 2.5 1.0 1.8 1.4 339 chr3R 9095700 intron pum - chr3R 9095870 intron pum - chr3R 9096039 intron pum - chr3R_4_9095001 chr3R_9095001 RAL-229_75b 781 chr3R 9132441 9132468 chr3R 9132545 9132572 6 102 3.5 0.5 2.0 2.0 131 chr3R 9132441 intron pum - chr3R 9132506 intron pum - chr3R 9132572 intron pum - chr3R_6_9130001 chr3R_9130001 RAL-229_75b 782 chr3R 9141163 9141175 chr3R 9141248 9141261 5 86 4.5 3.0 3.8 1.0 98 chr3R 9141163 intron pum - chr3R 9141212 intron pum - chr3R 9141261 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-229_75b 783 chr3R 9198729 9198760 chr3R 9199168 9199204 10 443 1.5 0.5 1.0 5.0 475 chr3R 9198729 intron pum - chr3R 9198966 intron pum - chr3R 9199204 intron pum - chr3R_10_9195001 chr3R_9195001 RAL-229_75b 784 chr3R 9211458 9211493 chr3R 9211653 9211680 8 193 3.5 2.0 2.8 2.1 222 chr3R 9211458 intron pum - chr3R 9211569 intron pum - chr3R 9211680 intron pum - chr3R_8_9210001 chr3R_9210001 RAL-229_75b 785 chr3R 9278792 9278817 chr3R 9284052 9284058 Rt1a 4 5254 1.0 6.0 3.5 0.9 5266 chr3R 9278792 intergenic not near genes chr3R 9281425 intergenic not near genes chr3R 9284058 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-229_75b 786 chr3R 9319579 9319598 chr3R 9320007 9320033 jockey 5 432 2.5 1.5 2.0 1.7 454 chr3R 9319579 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320033 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-229_75b 787 chr3R 9382827 9382849 chr3R 9382952 9382966 5 123 0.5 2.0 1.2 2.3 139 chr3R 9382827 intron FER - chr3R 9382896 intron FER - chr3R 9382966 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-229_75b 788 chr3R 9699984 9700003 chr3R 9700073 9700092 1360 6 89 2.0 2.5 2.2 1.9 108 chr3R 9699984 intron Unc-115a - chr3R 9700038 intron Unc-115a - chr3R 9700092 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 RAL-229_75b 789 chr3R 9836877 9836901 chr3R 9836965 9836974 7 83 1.0 4.0 2.5 2.0 97 chr3R 9836877 intron Teh1 - chr3R 9836926 intron Teh1 - chr3R 9836974 intron Teh1 - chr3R_7_9835001 chr3R_9835001 RAL-229_75b 790 chr3R 10073778 10073800 chr3R 10073887 10073909 4 109 1.0 5.5 3.2 1.0 131 chr3R 10073778 intergenic nerfin-2 +,CG5361 - chr3R 10073844 3` UTR CG5361 - chr3R 10073909 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-229_75b 791 chr3R 10275556 10275583 chr3R 10275632 10275660 4 77 1.5 2.0 1.8 1.4 104 chr3R 10275556 intron CG43143 + chr3R 10275608 intron CG43143 + chr3R 10275660 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-229_75b 792 chr3R 10299155 10299181 chr3R 10299255 10299278 7 99 2.5 2.5 2.5 2.0 123 chr3R 10299155 intron CG43143 + chr3R 10299216 intron CG43143 + chr3R 10299278 intron CG43143 + chr3R_7_10295001 chr3R_10295001 RAL-229_75b 793 chr3R 10361415 10361440 chr3R 10361509 10361534 4 94 1.5 0.0 0.8 2.2 119 chr3R 10361415 3` UTR jumu + chr3R 10361474 3` UTR jumu + chr3R 10361534 3` UTR jumu + chr3R_4_10360001 chr3R_10360001 RAL-229_75b 794 chr3R 10531880 10531899 chr3R 10531961 10531979 7 81 3.5 3.0 3.2 1.7 99 chr3R 10531880 intron hth - chr3R 10531930 intron hth - chr3R 10531979 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-229_75b 795 chr3R 10641597 10641625 chr3R 10641677 10641702 5 79 2.0 1.0 1.5 2.0 105 chr3R 10641597 5` UTR CR44018 + chr3R 10641650 5` UTR CR44018 + chr3R 10641702 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-229_75b 796 chr3R 10723764 10723787 chr3R 10723856 10723872 8 90 2.0 1.0 1.5 3.2 108 chr3R 10723764 intergenic not near genes chr3R 10723818 intergenic not near genes chr3R 10723872 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-229_75b 797 chr3R 10727655 10727679 chr3R 10727735 10727748 5 77 2.5 2.5 2.5 1.4 93 chr3R 10727655 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727748 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-229_75b 798 chr3R 10886882 10886903 chr3R 10886962 10886983 4 80 0.0 3.5 1.8 1.4 101 chr3R 10886882 intron Leash + chr3R 10886932 intron Leash + chr3R 10886983 intron Leash + chr3R_4_10885001 chr3R_10885001 RAL-229_75b 799 chr3R 10924743 10924773 chr3R 10924834 10924851 11 89 2.0 1.0 1.5 4.4 108 chr3R 10924743 intergenic not near genes chr3R 10924797 intergenic not near genes chr3R 10924851 intergenic not near genes chr3R_11_10920001 chr3R_10920001 RAL-229_75b 800 chr3R 11016952 11016983 chr3R 11017045 11017076 11 90 1.5 1.5 1.5 4.4 124 chr3R 11016952 intron CG34114 + chr3R 11017014 intron CG34114 + chr3R 11017076 intron CG34114 + chr3R_11_11015001 chr3R_11015001 RAL-229_75b 801 chr3R 11085461 11085483 chr3R 11085538 11085560 5 74 0.5 1.5 1.0 2.5 99 chr3R 11085461 3` UTR CR44940 - chr3R 11085510 intergenic CR44940 - chr3R 11085560 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-229_75b 802 chr3R 11085780 11085799 chr3R 11086075 11086094 4 294 0.5 2.0 1.2 1.8 314 chr3R 11085780 intergenic CR44940 - chr3R 11085937 intergenic CR44940 - chr3R 11086094 intergenic not near genes chr3R_4_11085001 chr3R_11085001 RAL-229_75b 803 chr3R 11192285 11192315 chr3R 11192932 11192960 6 646 2.0 1.0 1.5 2.4 675 chr3R 11192285 intergenic not near genes chr3R 11192622 intergenic not near genes chr3R 11192960 intergenic not near genes chr3R_6_11190001 chr3R_11190001 RAL-229_75b 804 chr3R 11313240 11313258 chr3R 11313329 11313336 5 86 2.0 4.0 3.0 1.2 96 chr3R 11313240 intergenic not near genes chr3R 11313288 intergenic not near genes chr3R 11313336 intergenic not near genes chr3R_5_11310001 chr3R_11310001 RAL-229_75b 805 chr3R 11379241 11379266 chr3R 11388396 11388421 roo 5 9154 2.5 1.5 2.0 1.7 9180 chr3R 11379241 intron pros + chr3R 11383831 intron pros + chr3R 11388421 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-229_75b 806 chr3R 11452083 11452105 chr3R 11452166 11452192 7 84 1.5 2.5 2.0 2.3 109 chr3R 11452083 intron CG17230 + chr3R 11452138 intron CG17230 + chr3R 11452192 intron CG17230 + chr3R_7_11450001 chr3R_11450001 RAL-229_75b 807 chr3R 11455590 11455608 chr3R 11455716 11455734 4 126 0.5 1.5 1.0 2.0 144 chr3R 11455590 intron,intron CG17230 +,PGRP-LB - chr3R 11455662 intron,intron CG17230 +,PGRP-LB - chr3R 11455734 intron,intron CG17230 +,PGRP-LB - chr3R_4_11455001 chr3R_11455001 RAL-229_75b 808 chr3R 11664794 11664821 chr3R 11664886 11664913 7 91 1.0 2.5 1.8 2.5 119 chr3R 11664794 intron CG42327 + chr3R 11664854 intron CG42327 + chr3R 11664913 intron CG42327 + chr3R_7_11660001 chr3R_11660001 RAL-229_75b 809 chr3R 11708640 11708653 chr3R 11708848 11708856 4 207 4.0 1.0 2.5 1.1 216 chr3R 11708640 intergenic not near genes chr3R 11708748 intergenic not near genes chr3R 11708856 intergenic not near genes chr3R_4_11705001 chr3R_11705001 RAL-229_75b 810 chr3R 11728184 11728206 chr3R 11728264 11728287 4 80 0.0 2.0 1.0 2.0 103 chr3R 11728184 intron CG12594 + chr3R 11728236 intron CG12594 + chr3R 11728287 intron CG12594 + chr3R_4_11725001 chr3R_11725001 RAL-229_75b 811 chr3R 11811095 11811125 chr3R 11811184 11811218 11 94 1.0 5.5 3.2 2.6 123 chr3R 11811095 5` UTR ClC-a - chr3R 11811156 intron ClC-a - chr3R 11811218 intron ClC-a - chr3R_11_11810001 chr3R_11810001 RAL-229_75b 812 chr3R 11841071 11841095 chr3R 11846254 11846286 BS 4 5187 0.0 2.0 1.0 2.0 5215 chr3R 11841071 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-229_75b 813 chr3R 11945387 11945401 chr3R 11945481 11945498 6 93 2.5 0.5 1.5 2.4 111 chr3R 11945387 intron Cad87A - chr3R 11945442 intron Cad87A - chr3R 11945498 intron Cad87A - chr3R_6_11945001 chr3R_11945001 RAL-229_75b 814 chr3R 11994993 11995021 chr3R 11995073 11995101 6 73 0.5 2.0 1.2 2.7 108 chr3R 11994993 exon Tk - chr3R 11995047 exon Tk - chr3R 11995101 exon Tk - chr3R_6_11995001 chr3R_11995001 RAL-229_75b 815 chr3R 12081999 12082021 chr3R 12082073 12082096 6 75 2.5 2.0 2.2 1.9 97 chr3R 12081999 intron CG14741 - chr3R 12082048 intron CG14741 - chr3R 12082096 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-229_75b 816 chr3R 12183185 12183203 chr3R 12183270 12183289 4 86 3.0 3.5 3.2 1.0 104 chr3R 12183185 intergenic not near genes chr3R 12183237 intergenic not near genes chr3R 12183289 intergenic not near genes chr3R_4_12180001 chr3R_12180001 RAL-229_75b 817 chr3R 12733474 12733494 chr3R 12733551 12733571 4 77 5.5 0.5 3.0 1.0 97 chr3R 12733474 intergenic not near genes chr3R 12733522 intergenic not near genes chr3R 12733571 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-229_75b 818 chr3R 12739044 12739066 chr3R 12739117 12739142 6 75 1.0 1.5 1.2 2.7 98 chr3R 12739044 intergenic not near genes chr3R 12739093 intergenic not near genes chr3R 12739142 intergenic CG5724 + chr3R_6_12735001 chr3R_12735001 RAL-229_75b 819 chr3R 12819043 12819052 chr3R 12819125 12819135 5 82 2.5 2.5 2.5 1.4 92 chr3R 12819043 intergenic not near genes chr3R 12819089 intergenic not near genes chr3R 12819135 intergenic not near genes chr3R_5_12815001 chr3R_12815001 RAL-229_75b 820 chr3R 12866493 12866516 chr3R 12866644 12866665 9 151 1.0 2.0 1.5 3.6 172 chr3R 12866493 intergenic not near genes chr3R 12866579 intergenic not near genes chr3R 12866665 intergenic not near genes chr3R_9_12865001 chr3R_12865001 RAL-229_75b 821 chr3R 12920169 12920185 chr3R 12925370 12925386 copia 5 5201 1.5 5.0 3.2 1.2 5217 chr3R 12920169 intron beat-Vb + chr3R 12922778 intron beat-Vb + chr3R 12925386 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-229_75b 822 chr3R 13067007 13067130 chr3R 13067094 13067206 5 80 0.0 0.0 0.0 5.0 199 chr3R 13067007 intron sim + chr3R 13067106 intron sim + chr3R 13067206 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-229_75b 823 chr3R 13104419 13104419 chr3R 21907535 21907536 4 8803116 10.5 10.5 10.5 0.3 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-229_75b 824 chr3R 13120782 13120798 chr3R 13120850 13120856 4 70 2.0 3.5 2.8 1.1 74 chr3R 13120782 intron timeout + chr3R 13120819 intron timeout + chr3R 13120856 intron timeout + chr3R_4_13120001 chr3R_13120001 RAL-229_75b 825 chr3R 13143061 13143064 chr3R 13148616 13148640 mdg3 5 5568 4.0 6.5 5.2 0.8 5579 chr3R 13143061 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145850 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148640 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-229_75b 826 chr3R 13195962 13195982 chr3R 13196057 13196077 4 95 3.5 2.0 2.8 1.1 115 chr3R 13195962 intergenic not near genes chr3R 13196020 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-229_75b 827 chr3R 13391639 13391664 chr3R 13391713 13391720 8 73 3.0 1.5 2.2 2.5 81 chr3R 13391639 intron CCHa2 - chr3R 13391680 intron CCHa2 - chr3R 13391720 intron CCHa2 - chr3R_8_13390001 chr3R_13390001 RAL-229_75b 828 chr3R 13571531 13571562 chr3R 13571608 13571639 6 77 1.5 0.5 1.0 3.0 108 chr3R 13571531 intergenic not near genes chr3R 13571585 intergenic not near genes chr3R 13571639 intergenic not near genes chr3R_6_13570001 chr3R_13570001 RAL-229_75b 829 chr3R 13603058 13603075 chr3R 13603149 13603166 4 91 3.5 2.0 2.8 1.1 108 chr3R 13603058 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-229_75b 830 chr3R 13672943 13672974 chr3R 13673021 13673045 5 76 3.0 1.5 2.2 1.6 102 chr3R 13672943 intron Task6 - chr3R 13672994 intron Task6 - chr3R 13673045 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-229_75b 831 chr3R 13693028 13693028 chr3R 21907534 21907536 5 8214507 9.0 10.5 9.8 0.5 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-229_75b 832 chr3R 13766027 13766046 chr3R 13766319 13766339 4 292 1.0 3.5 2.2 1.2 312 chr3R 13766027 intron CG9312 + chr3R 13766183 exon CG9312 + chr3R 13766339 exon CG9312 + chr3R_4_13765001 chr3R_13765001 RAL-229_75b 833 chr3R 13921055 13921076 chr3R 13921131 13921140 4 72 1.0 2.5 1.8 1.4 85 chr3R 13921055 intergenic not near genes chr3R 13921098 intergenic not near genes chr3R 13921140 intergenic not near genes chr3R_4_13920001 chr3R_13920001 RAL-229_75b 834 chr3R 13958558 13958582 chr3R 13958653 13958678 6 94 2.5 1.0 1.8 2.1 120 chr3R 13958558 intergenic Ipp + chr3R 13958618 intergenic Ipp + chr3R 13958678 intergenic Ipp + chr3R_6_13955001 chr3R_13955001 RAL-229_75b 835 chr3R 14021648 14021665 chr3R 14023465 14023482 S-element 4 1817 4.0 1.0 2.5 1.1 1834 chr3R 14021648 intron rdx - chr3R 14022565 intron rdx - chr3R 14023482 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-229_75b 836 chr3R 14180813 14180820 chr3R 14185578 14185585 F-element 5 4765 2.0 0.5 1.2 2.3 4772 chr3R 14180813 intron Dop1R1 - chr3R 14183199 intron Dop1R1 - chr3R 14185585 intron Dop1R1 - chr3R_5_14180001 chr3R_14180001 RAL-229_75b 837 chr3R 14245608 14245642 chr3R 14245739 14245773 11 131 3.0 3.0 3.0 2.8 165 chr3R 14245608 intergenic CG9616 - chr3R 14245690 intergenic CG9616 - chr3R 14245773 intergenic CG9616 - chr3R_11_14245001 chr3R_14245001 RAL-229_75b 838 chr3R 14499882 14499904 chr3R 14499962 14499984 5 76 0.5 2.0 1.2 2.3 102 chr3R 14499882 intron CR44177 + chr3R 14499933 intron CR44177 + chr3R 14499984 intron CR44177 + chr3R_5_14495001 chr3R_14495001 RAL-229_75b 839 chr3R 14560670 14560691 chr3R 14560857 14560886 5 193 1.0 1.0 1.0 2.5 216 chr3R 14560670 intergenic CG14850 + chr3R 14560778 intergenic CG14850 + chr3R 14560886 intergenic CG14850 + chr3R_5_14560001 chr3R_14560001 RAL-229_75b 840 chr3R 14577965 14577980 chr3R 14578081 14578096 4 116 1.5 2.0 1.8 1.4 131 chr3R 14577965 intron stumps + chr3R 14578030 intron stumps + chr3R 14578096 intron stumps + chr3R_4_14575001 chr3R_14575001 RAL-229_75b 841 chr3R 14704392 14704417 chr3R 14704467 14704494 10 76 2.0 2.0 2.0 3.3 102 chr3R 14704392 intron kibra - chr3R 14704443 intron kibra - chr3R 14704494 intron kibra - chr3R_10_14700001 chr3R_14700001 RAL-229_75b 842 chr3R 14859074 14859106 chr3R 14859217 14859246 9 141 4.0 1.0 2.5 2.6 172 chr3R 14859074 intron btsz - chr3R 14859160 intron btsz - chr3R 14859246 intron btsz - chr3R_9_14855001 chr3R_14855001 RAL-229_75b 843 chr3R 14898480 14898505 chr3R 14898600 14898625 4 120 0.5 1.5 1.0 2.0 145 chr3R 14898480 intergenic Nup93-2 -,CG3817 + chr3R 14898552 intergenic Nup93-2 -,CG3817 + chr3R 14898625 intergenic CG3817 +,Nup93-2 - chr3R_4_14895001 chr3R_14895001 RAL-229_75b 844 chr3R 15127780 15127806 chr3R 15127859 15127886 6 80 0.5 0.5 0.5 4.0 106 chr3R 15127780 intron CG42788 - chr3R 15127833 intron CG42788 - chr3R 15127886 intron CG42788 - chr3R_6_15125001 chr3R_15125001 RAL-229_75b 845 chr3R 15132060 15132091 chr3R 15135120 15135156 Juan 4 3063 2.5 0.0 1.2 1.8 3096 chr3R 15132060 intergenic CG42788 - chr3R 15133608 intergenic not near genes chr3R 15135156 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-229_75b 846 chr3R 15151967 15151999 chr3R 15152061 15152092 8 92 0.5 0.5 0.5 5.3 125 chr3R 15151967 5` UTR Gyc88E + chr3R 15152030 5` UTR Gyc88E + chr3R 15152092 5` UTR Gyc88E + chr3R_8_15150001 chr3R_15150001 RAL-229_75b 847 chr3R 15155515 15155540 chr3R 15155602 15155627 7 87 2.0 2.5 2.2 2.2 112 chr3R 15155515 intron Gyc88E + chr3R 15155571 intron Gyc88E + chr3R 15155627 intron Gyc88E + chr3R_7_15155001 chr3R_15155001 RAL-229_75b 848 chr3R 15156615 15156628 chr3R 15156692 15156707 4 80 2.0 0.5 1.2 1.8 92 chr3R 15156615 intron Gyc88E + chr3R 15156661 intron Gyc88E + chr3R 15156707 intron Gyc88E + chr3R_4_15155001 chr3R_15155001 RAL-229_75b 849 chr3R 15416249 15416284 chr3R 15416327 15416364 8 76 0.5 2.5 1.5 3.2 115 chr3R 15416249 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_8_15415001 chr3R_15415001 RAL-229_75b 850 chr3R 15572116 15572144 chr3R 15572209 15572234 4 92 0.0 2.5 1.2 1.8 118 chr3R 15572116 intergenic not near genes chr3R 15572175 intergenic not near genes chr3R 15572234 intergenic not near genes chr3R_4_15570001 chr3R_15570001 RAL-229_75b 851 chr3R 15580347 15580374 chr3R 15580424 15580451 9 77 3.0 2.5 2.8 2.4 104 chr3R 15580347 intergenic not near genes chr3R 15580399 intergenic not near genes chr3R 15580451 intergenic not near genes chr3R_9_15580001 chr3R_15580001 RAL-229_75b 852 chr3R 15601170 15601176 chr3R 15608692 15608698 412 4 7522 4.5 5.0 4.8 0.7 7528 chr3R 15601170 intergenic not near genes chr3R 15604934 intergenic not near genes chr3R 15608698 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-229_75b 853 chr3R 15601178 15601195 chr3R 15608685 15608717 412 9 7518 2.0 3.5 2.8 2.4 7539 chr3R 15601178 intergenic not near genes chr3R 15604948 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-229_75b 854 chr3R 15644101 15644136 chr3R 15644190 15644224 4 89 2.0 0.5 1.2 1.8 123 chr3R 15644101 intergenic not near genes chr3R 15644162 intergenic not near genes chr3R 15644224 intergenic not near genes chr3R_4_15640001 chr3R_15640001 RAL-229_75b 855 chr3R 15691183 15691331 chr3R 15691288 15691418 6 88 0.0 0.5 0.2 5.0 235 chr3R 15691183 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691418 intergenic not near genes chr3R_6_15690001 chr3R_15690001 RAL-229_75b 856 chr3R 15709645 15709661 chr3R 15709768 15709790 4 126 2.0 1.0 1.5 1.6 145 chr3R 15709645 intergenic not near genes chr3R 15709718 intergenic not near genes chr3R 15709790 intergenic not near genes chr3R_4_15705001 chr3R_15705001 RAL-229_75b 857 chr3R 15790050 15790284 chr3R 15790146 15790402 26 108 6.0 12.0 9.0 2.6 352 chr3R 15790050 exon c(3)G - chr3R 15790226 intron c(3)G - chr3R 15790402 exon c(3)G - chr3R_26_15790001 chr3R_15790001 RAL-229_75b 858 chr3R 15790380 15790398 chr3R 15790585 15790604 9 205 7.0 14.5 10.8 0.8 224 chr3R 15790380 exon c(3)G - chr3R 15790492 exon c(3)G - chr3R 15790604 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-229_75b 859 chr3R 15790399 15790404 chr3R 15790582 15790610 5 201 8.0 14.5 11.2 0.4 211 chr3R 15790399 exon c(3)G - chr3R 15790504 exon c(3)G - chr3R 15790610 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-229_75b 860 chr3R 15790837 15790871 chr3R 15790953 15790985 20 114 18.0 17.5 17.8 1.1 148 chr3R 15790837 exon c(3)G - chr3R 15790911 intron c(3)G - chr3R 15790985 exon c(3)G - chr3R_20_15790001 chr3R_15790001 RAL-229_75b 861 chr3R 15808077 15808099 chr3R 15808164 15808194 4 90 0.5 2.5 1.5 1.6 117 chr3R 15808077 intron alpha-Man-IIb + chr3R 15808136 intron alpha-Man-IIb + chr3R 15808194 intron alpha-Man-IIb + chr3R_4_15805001 chr3R_15805001 RAL-229_75b 862 chr3R 16048853 16048873 chr3R 16048940 16048963 4 89 4.0 1.5 2.8 1.1 110 chr3R 16048853 intron ird5 - chr3R 16048908 intron ird5 - chr3R 16048963 intron ird5 - chr3R_4_16045001 chr3R_16045001 RAL-229_75b 863 chr3R 16756317 16756350 chr3R 16762508 16762520 diver 11 6188 3.0 1.5 2.2 3.4 6203 chr3R 16756317 intron bxd - chr3R 16759418 intron bxd - chr3R 16762520 intron bxd - chr3R_11_16755001 chr3R_16755001 RAL-229_75b 864 chr3R 16879658 16879682 chr3R 16879743 16879762 7 81 3.5 1.5 2.5 2.0 104 chr3R 16879658 intron iab-8 - chr3R 16879710 intron iab-8 - chr3R 16879762 intron iab-8 - chr3R_7_16875001 chr3R_16875001 RAL-229_75b 865 chr3R 17067510 17067535 chr3R 17067593 17067618 6 80 2.5 1.0 1.8 2.1 108 chr3R 17067510 intron Dad + chr3R 17067564 intron Dad + chr3R 17067618 intron Dad + chr3R_6_17065001 chr3R_17065001 RAL-229_75b 866 chr3R 17194409 17194429 chr3R 17194488 17194505 5 78 3.5 2.5 3.0 1.2 96 chr3R 17194409 intron Mur89F - chr3R 17194457 intron Mur89F - chr3R 17194505 intron Mur89F - chr3R_5_17190001 chr3R_17190001 RAL-229_75b 867 chr3R 17268681 17268703 chr3R 17268803 17268825 4 122 1.0 2.0 1.5 1.6 144 chr3R 17268681 intergenic not near genes chr3R 17268753 intergenic not near genes chr3R 17268825 intergenic not near genes chr3R_4_17265001 chr3R_17265001 RAL-229_75b 868 chr3R 17273971 17274002 chr3R 17274078 17274107 8 107 3.5 0.5 2.0 2.7 136 chr3R 17273971 intergenic not near genes chr3R 17274039 intergenic not near genes chr3R 17274107 intergenic not near genes chr3R_8_17270001 chr3R_17270001 RAL-229_75b 869 chr3R 17554356 17554376 chr3R 17554633 17554634 5 273 5.0 1.5 3.2 1.2 278 chr3R 17554356 intergenic not near genes chr3R 17554495 intergenic not near genes chr3R 17554634 intergenic not near genes chr3R_5_17550001 chr3R_17550001 RAL-229_75b 870 chr3R 17586714 17586730 chr3R 17586819 17586835 7 104 2.5 0.5 1.5 2.8 121 chr3R 17586714 intergenic not near genes chr3R 17586774 intergenic not near genes chr3R 17586835 intergenic not near genes chr3R_7_17585001 chr3R_17585001 RAL-229_75b 871 chr3R 17845207 17845208 chr3R 17845277 17845281 5 72 5.5 6.0 5.8 0.7 74 chr3R 17845207 intron tinc + chr3R 17845244 intron tinc + chr3R 17845281 intron tinc + chr3R_5_17845001 chr3R_17845001 RAL-229_75b 872 chr3R 17925855 17925886 chr3R 17927322 17927351 hobo 4 1466 4.5 5.5 5.0 0.7 1496 chr3R 17925855 intron cpo + chr3R 17926603 intron cpo + chr3R 17927351 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-229_75b 873 chr3R 18191402 18191422 chr3R 18191478 18191490 4 76 2.5 4.0 3.2 1.0 88 chr3R 18191402 exon CG14313 - chr3R 18191446 exon CG14313 - chr3R 18191490 intron CG14313 - chr3R_4_18190001 chr3R_18190001 RAL-229_75b 874 chr3R 18215653 18215659 chr3R 18295878 18295884 4 80224 0.0 7.0 3.5 0.9 80231 chr3R 18215653 intergenic CG14314 + chr3R 18255768 5` UTR,exon Tgs1 +,moi + chr3R 18295884 intron l(3)05822 - chr3R_4_18255001 chr3R_18255001 RAL-229_75b 875 chr3R 18600380 18600399 chr3R 18600567 18600582 6 184 17.5 12.5 15.0 0.4 202 chr3R 18600380 intron,intron qin +,CG14304 - chr3R 18600481 intron,intron qin +,CG14304 - chr3R 18600582 intron,intron qin +,CG14304 - chr3R_6_18600001 chr3R_18600001 RAL-229_75b 876 chr3R 18606511 18606532 chr3R 18610736 18610764 F-element 4 4228 2.0 3.0 2.5 1.1 4253 chr3R 18606511 intron,intron qin +,CG14304 - chr3R 18608638 intron,intron qin +,CG14304 - chr3R 18610764 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-229_75b 877 chr3R 18766779 18766809 chr3R 18766855 18766877 9 73 3.0 1.5 2.2 2.8 98 chr3R 18766779 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766877 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-229_75b 878 chr3R 18812093 18812109 chr3R 18812160 18812187 9 77 3.0 4.0 3.5 2.0 94 chr3R 18812093 intron CG18208 - chr3R 18812140 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-229_75b 879 chr3R 18836848 18836865 chr3R 18836949 18836954 6 105 2.5 5.5 4.0 1.2 106 chr3R 18836848 intron CG18208 - chr3R 18836901 intron CG18208 - chr3R 18836954 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-229_75b 880 chr3R 19078121 19078125 chr3R 19078213 19078215 4 92 2.5 3.5 3.0 1.0 94 chr3R 19078121 intron cdi - chr3R 19078168 intron cdi - chr3R 19078215 intron cdi - chr3R_4_19075001 chr3R_19075001 RAL-229_75b 881 chr3R 19140267 19140299 chr3R 19140714 19140732 4 443 1.5 2.0 1.8 1.4 465 chr3R 19140267 3` UTR Ppcs - chr3R 19140500 3` UTR Ppcs - chr3R 19140732 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-229_75b 882 chr3R 19150761 19150780 chr3R 19150859 19150874 6 97 4.0 3.0 3.5 1.3 113 chr3R 19150761 intron CG5835 - chr3R 19150818 intron CG5835 - chr3R 19150874 intron CG5835 - chr3R_6_19150001 chr3R_19150001 RAL-229_75b 883 chr3R 19418422 19418440 chr3R 19418500 19418527 4 85 0.5 0.5 0.5 2.7 105 chr3R 19418422 intron CG31221 + chr3R 19418474 intron CG31221 + chr3R 19418527 intron CG31221 + chr3R_4_19415001 chr3R_19415001 RAL-229_75b 884 chr3R 19505937 19505966 chr3R 19506033 19506059 9 95 3.0 2.5 2.8 2.4 122 chr3R 19505937 intron Dys + chr3R 19505998 intron Dys + chr3R 19506059 intron Dys + chr3R_9_19505001 chr3R_19505001 RAL-229_75b 885 chr3R 19681601 19681631 chr3R 19681692 19681722 9 91 2.0 3.0 2.5 2.6 121 chr3R 19681601 intron Naam + chr3R 19681662 intron Naam + chr3R 19681722 intron Naam + chr3R_9_19680001 chr3R_19680001 RAL-229_75b 886 chr3R 19800697 19800701 chr3R 19800761 19800764 4 70 2.0 3.5 2.8 1.1 67 chr3R 19800697 intron bnl - chr3R 19800730 intron bnl - chr3R 19800764 intron bnl - chr3R_4_19800001 chr3R_19800001 RAL-229_75b 887 chr3R 19846960 19846967 chr3R 19847120 19847127 6 160 2.5 1.0 1.8 2.1 167 chr3R 19846960 intergenic CG4662 + chr3R 19847044 intergenic CG4662 + chr3R 19847127 intergenic CG4662 + chr3R_6_19845001 chr3R_19845001 RAL-229_75b 888 chr3R 19953444 19953467 chr3R 19953522 19953545 4 79 6.0 4.0 5.0 0.7 101 chr3R 19953444 intron Hs6st - chr3R 19953494 intron Hs6st - chr3R 19953545 intron Hs6st - chr3R_4_19950001 chr3R_19950001 RAL-229_75b 889 chr3R 20154070 20154085 chr3R 20154187 20154201 8 114 1.0 4.5 2.8 2.1 131 chr3R 20154070 intergenic not near genes chr3R 20154136 intergenic not near genes chr3R 20154201 intergenic not near genes chr3R_8_20150001 chr3R_20150001 RAL-229_75b 890 chr3R 20259792 20259811 chr3R 20259871 20259894 5 82 0.5 3.0 1.8 1.8 102 chr3R 20259792 intron cic + chr3R 20259843 intron cic + chr3R 20259894 intron cic + chr3R_5_20255001 chr3R_20255001 RAL-229_75b 891 chr3R 20266522 20266540 chr3R 20272993 20273010 Burdock 5 6471 2.0 2.0 2.0 1.7 6488 chr3R 20266522 intron cic + chr3R 20269766 intron cic + chr3R 20273010 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-229_75b 892 chr3R 20281482 20281521 chr3R 20281575 20281609 5 91 0.0 2.0 1.0 2.5 127 chr3R 20281482 intron cic + chr3R 20281546 intron cic + chr3R 20281609 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-229_75b 893 chr3R 20286162 20286177 chr3R 20286269 20286284 6 107 1.0 0.5 0.8 3.3 122 chr3R 20286162 intron cic + chr3R 20286223 intron cic + chr3R 20286284 intron cic + chr3R_6_20285001 chr3R_20285001 RAL-229_75b 894 chr3R 20388009 20388037 chr3R 20388091 20388091 5 73 1.0 2.5 1.8 1.8 82 chr3R 20388009 intron Gfrl - chr3R 20388050 intron Gfrl - chr3R 20388091 intron Gfrl - chr3R_5_20385001 chr3R_20385001 RAL-229_75b 895 chr3R 20573306 20573317 chr3R 20573507 20573517 5 199 1.5 0.0 0.8 2.8 211 chr3R 20573306 intergenic CG5191 + chr3R 20573412 intergenic CG5191 + chr3R 20573517 intergenic not near genes chr3R_5_20570001 chr3R_20570001 RAL-229_75b 896 chr3R 20698005 20698036 chr3R 20698099 20698130 6 92 1.0 1.5 1.2 2.7 125 chr3R 20698005 intron Oamb - chr3R 20698068 intron Oamb - chr3R 20698130 intron Oamb - chr3R_6_20695001 chr3R_20695001 RAL-229_75b 897 chr3R 20703480 20703515 chr3R 20703874 20703906 7 391 0.0 2.0 1.0 3.5 426 chr3R 20703480 intron Oamb - chr3R 20703693 intron Oamb - chr3R 20703906 intron Oamb - chr3R_7_20700001 chr3R_20700001 RAL-229_75b 898 chr3R 21015269 21015282 chr3R 21015356 21015369 4 87 0.5 4.5 2.5 1.1 100 chr3R 21015269 3` UTR Calx + chr3R 21015319 3` UTR Calx + chr3R 21015369 3` UTR Calx + chr3R_4_21015001 chr3R_21015001 RAL-229_75b 899 chr3R 21163256 21163279 chr3R 21163332 21163357 7 77 1.0 2.0 1.5 2.8 101 chr3R 21163256 intron SNF4Agamma + chr3R 21163306 intron SNF4Agamma + chr3R 21163357 intron SNF4Agamma + chr3R_7_21160001 chr3R_21160001 RAL-229_75b 900 chr3R 21189331 21189355 chr3R 21189436 21189440 4 100 2.0 0.0 1.0 2.0 109 chr3R 21189331 intron SNF4Agamma + chr3R 21189386 intron SNF4Agamma + chr3R 21189440 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-229_75b 901 chr3R 21318349 21318379 chr3R 21318433 21318459 6 83 0.0 0.5 0.2 5.0 110 chr3R 21318349 3` UTR CG16791 - chr3R 21318404 3` UTR CG16791 - chr3R 21318459 3` UTR CG16791 - chr3R_6_21315001 chr3R_21315001 RAL-229_75b 902 chr3R 21385692 21385960 chr3R 21385774 21386015 8 71 1.0 0.0 0.5 5.3 323 chr3R 21385692 intergenic not near genes chr3R 21385854 intergenic not near genes chr3R 21386015 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-229_75b 903 chr3R 21506871 21506910 chr3R 21506957 21506990 4 84 0.0 1.0 0.5 2.7 119 chr3R 21506871 intron C15 + chr3R 21506930 intron C15 + chr3R 21506990 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-229_75b 904 chr3R 21586418 21586444 chr3R 21586502 21586528 6 84 1.0 2.5 1.8 2.1 110 chr3R 21586418 intron InR - chr3R 21586473 intron InR - chr3R 21586528 intron InR - chr3R_6_21585001 chr3R_21585001 RAL-229_75b 905 chr3R 21600251 21600260 chr3R 21600329 21600335 4 77 0.0 3.0 1.5 1.6 84 chr3R 21600251 intron InR - chr3R 21600293 intron InR - chr3R 21600335 intron InR - chr3R_4_21600001 chr3R_21600001 RAL-229_75b 906 chr3R 21609003 21609036 chr3R 21611637 21611667 NOF 6 2628 2.0 1.5 1.8 2.1 2664 chr3R 21609003 intron InR - chr3R 21610335 intron InR - chr3R 21611667 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-229_75b 907 chr3R 21761120 21761149 chr3R 21768512 21768529 mdg1 5 7387 2.5 3.0 2.8 1.3 7409 chr3R 21761120 exon CG42335 + chr3R 21764824 intron CG42335 + chr3R 21768529 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-229_75b 908 chr3R 21794454 21794489 chr3R 21794544 21794575 9 89 0.5 2.5 1.5 3.6 121 chr3R 21794454 intron CASK - chr3R 21794514 intron CASK - chr3R 21794575 intron CASK - chr3R_9_21790001 chr3R_21790001 RAL-229_75b 909 chr3R 21907534 21907534 chr3R 28831801 28831802 16 6924268 12.5 11.5 12.0 1.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-229_75b 910 chr3R 17389054 17389054 chr3R 21907535 21907535 4 4518481 4.5 10.5 7.5 0.5 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-229_75b 911 chr3R 20177845 20177845 chr3R 21907535 21907535 6 1729690 5.0 10.5 7.8 0.7 1729690 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_6_21040001 chr3R_21040001 RAL-229_75b 912 chr3R 21907535 21907535 chr3R 28831801 28831803 35 6924267 12.0 11.5 11.8 2.7 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-229_75b 913 chr3R 21907536 21907536 chr3R 28831801 28831802 25 6924266 12.0 11.5 11.8 2.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-229_75b 914 chr3R 21939702 21939716 chr3R 21939810 21939824 4 108 4.0 4.0 4.0 0.8 122 chr3R 21939702 intergenic not near genes chr3R 21939763 intergenic not near genes chr3R 21939824 intergenic not near genes chr3R_4_21935001 chr3R_21935001 RAL-229_75b 915 chr3R 21996844 21996855 chr3R 21997262 21997286 5 428 1.5 1.0 1.2 2.3 442 chr3R 21996844 intron Eip93F + chr3R 21997065 intron Eip93F + chr3R 21997286 intron Eip93F + chr3R_5_21995001 chr3R_21995001 RAL-229_75b 916 chr3R 22040139 22040161 chr3R 22040316 22040336 6 176 1.5 1.0 1.2 2.7 197 chr3R 22040139 intergenic not near genes chr3R 22040238 intergenic not near genes chr3R 22040336 intergenic not near genes chr3R_6_22040001 chr3R_22040001 RAL-229_75b 917 chr3R 22234684 22234713 chr3R 22236003 22236032 pogo 6 1319 0.0 2.0 1.0 3.0 1348 chr3R 22234684 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236032 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-229_75b 918 chr3R 22346187 22346197 chr3R 22346265 22346283 5 84 4.5 0.0 2.2 1.6 96 chr3R 22346187 intergenic not near genes chr3R 22346235 intergenic not near genes chr3R 22346283 intergenic not near genes chr3R_5_22345001 chr3R_22345001 RAL-229_75b 919 chr3R 22350639 22350646 chr3R 22352452 22352471 4 1821 2.5 3.0 2.8 1.1 1832 chr3R 22350639 intergenic not near genes chr3R 22351555 intergenic rdhB + chr3R 22352471 intron rdhB + chr3R_4_22350001 chr3R_22350001 RAL-229_75b 920 chr3R 22450551 22450574 chr3R 22453191 22453214 NOF 6 2636 3.0 2.5 2.8 1.6 2663 chr3R 22450551 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_6_22450001 chr3R_22450001 RAL-229_75b 921 chr3R 22506256 22506279 chr3R 22506393 22506416 7 135 1.5 3.5 2.5 2.0 160 chr3R 22506256 intron Octbeta1R + chr3R 22506336 intron Octbeta1R + chr3R 22506416 intron Octbeta1R + chr3R_7_22505001 chr3R_22505001 RAL-229_75b 922 chr3R 22518437 22518452 chr3R 22518504 22518529 6 80 2.5 2.5 2.5 1.7 92 chr3R 22518437 3` UTR Octbeta1R + chr3R 22518483 3` UTR Octbeta1R + chr3R 22518529 3` UTR Octbeta1R + chr3R_6_22515001 chr3R_22515001 RAL-229_75b 923 chr3R 22684208 22684229 chr3R 22684284 22684305 5 76 3.5 2.5 3.0 1.2 97 chr3R 22684208 intergenic not near genes chr3R 22684256 intergenic not near genes chr3R 22684305 intergenic not near genes chr3R_5_22680001 chr3R_22680001 RAL-229_75b 924 chr3R 22794520 22794551 chr3R 22794595 22794625 4 73 1.0 0.0 0.5 2.7 105 chr3R 22794520 intergenic CG7029 + chr3R 22794572 intergenic not near genes chr3R 22794625 intergenic not near genes chr3R_4_22790001 chr3R_22790001 RAL-229_75b 925 chr3R 22797770 22797921 chr3R 22797855 22798017 10 88 0.0 0.0 0.0 10.0 247 chr3R 22797770 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798017 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-229_75b 926 chr3R 22803442 22803469 chr3R 22803632 22803659 6 191 1.5 3.0 2.2 1.9 217 chr3R 22803442 intergenic not near genes chr3R 22803550 intergenic not near genes chr3R 22803659 intergenic not near genes chr3R_6_22800001 chr3R_22800001 RAL-229_75b 927 chr3R 22808101 22808125 chr3R 22808184 22808202 7 82 0.0 2.0 1.0 3.5 101 chr3R 22808101 intergenic not near genes chr3R 22808152 intergenic not near genes chr3R 22808202 intergenic not near genes chr3R_7_22805001 chr3R_22805001 RAL-229_75b 928 chr3R 22887186 22887206 chr3R 22887252 22887285 4 74 1.0 2.0 1.5 1.6 99 chr3R 22887186 intergenic not near genes chr3R 22887236 intergenic not near genes chr3R 22887285 intergenic not near genes chr3R_4_22885001 chr3R_22885001 RAL-229_75b 929 chr3R 23064186 23064202 chr3R 23064295 23064311 4 108 2.0 2.5 2.2 1.2 125 chr3R 23064186 exon CG17111 - chr3R 23064248 intron CG17111 - chr3R 23064311 exon CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-229_75b 930 chr3R 23064873 23064896 chr3R 23064963 23064986 5 90 0.0 1.0 0.5 3.3 113 chr3R 23064873 intron CG17111 - chr3R 23064930 intron CG17111 - chr3R 23064986 intron CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-229_75b 931 chr3R 23073652 23073687 chr3R 23073741 23073775 6 85 1.5 1.5 1.5 2.4 123 chr3R 23073652 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073775 intron CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-229_75b 932 chr3R 23090403 23090437 chr3R 23090486 23090519 9 83 0.0 1.5 0.8 5.0 116 chr3R 23090403 intron CG13830 - chr3R 23090461 intron CG13830 - chr3R 23090519 intron CG13830 - chr3R_9_23090001 chr3R_23090001 RAL-229_75b 933 chr3R 23528260 23528277 chr3R 23528345 23528366 5 86 2.0 1.5 1.8 1.8 106 chr3R 23528260 intron CG10175 - chr3R 23528313 intron CG10175 - chr3R 23528366 intron CG10175 - chr3R_5_23525001 chr3R_23525001 RAL-229_75b 934 chr3R 23558404 23558415 chr3R 23560185 23560195 Bari1 5 1781 2.0 2.0 2.0 1.7 1791 chr3R 23558404 intron beat-IV + chr3R 23559300 intron beat-IV + chr3R 23560195 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-229_75b 935 chr3R 23684696 23684730 chr3R 23685182 23685208 roo 11 478 0.0 3.5 1.8 3.9 512 chr3R 23684696 exon CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685208 exon CG18754 + chr3R_11_23680001 chr3R_23680001 RAL-229_75b 936 chr3R 23826259 23826272 chr3R 23827848 23827861 4 1586 4.5 6.0 5.2 0.6 1602 chr3R 23826259 intron CG34355 + chr3R 23827060 intron CG34355 + chr3R 23827861 intron CG34355 + chr3R_4_23825001 chr3R_23825001 RAL-229_75b 937 chr3R 23830295 23830314 chr3R 23830372 23830394 7 79 2.5 2.0 2.2 2.2 99 chr3R 23830295 exon CG34355 + chr3R 23830344 intron CG34355 + chr3R 23830394 intron CG34355 + chr3R_7_23830001 chr3R_23830001 RAL-229_75b 938 chr3R 23871260 23871275 chr3R 23871412 23871427 6 152 2.0 1.0 1.5 2.4 167 chr3R 23871260 intron Pli - chr3R 23871344 intron Pli - chr3R 23871427 intron Pli - chr3R_6_23870001 chr3R_23870001 RAL-229_75b 939 chr3R 23949050 23949069 chr3R 23949127 23949146 5 77 1.0 3.5 2.2 1.6 96 chr3R 23949050 intergenic not near genes chr3R 23949098 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_5_23945001 chr3R_23945001 RAL-229_75b 940 chr3R 24076912 24076939 chr3R 24078378 24078406 hobo 4 1467 6.0 0.5 3.2 1.0 1494 chr3R 24076912 intron 4EHP - chr3R 24077659 intron 4EHP - chr3R 24078406 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-229_75b 941 chr3R 24199739 24199768 chr3R 24199819 24199848 4 80 1.0 1.5 1.2 1.8 109 chr3R 24199739 intron twin - chr3R 24199794 intron twin - chr3R 24199848 intron twin - chr3R_4_24195001 chr3R_24195001 RAL-229_75b 942 chr3R 24207219 24207247 chr3R 24212289 24212322 flea 4 5072 3.0 2.5 2.8 1.1 5103 chr3R 24207219 intron twin - chr3R 24209770 intron twin - chr3R 24212322 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-229_75b 943 chr3R 24236464 24236497 chr3R 24236541 24236570 6 76 3.0 1.5 2.2 1.9 106 chr3R 24236464 exon mask + chr3R 24236517 intron mask + chr3R 24236570 intron mask + chr3R_6_24235001 chr3R_24235001 RAL-229_75b 944 chr3R 24288250 24288284 chr3R 24288423 24288458 7 168 1.5 2.5 2.0 2.3 208 chr3R 24288250 3` UTR CG6356 + chr3R 24288354 3` UTR CG6356 + chr3R 24288458 3` UTR CG6356 + chr3R_7_24285001 chr3R_24285001 RAL-229_75b 945 chr3R 24493276 24493311 chr3R 24493505 24493513 BS 7 217 0.5 4.0 2.2 2.2 237 chr3R 24493276 intergenic not near genes chr3R 24493394 intergenic not near genes chr3R 24493513 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-229_75b 946 chr3R 24670065 24670191 chr3R 24670174 24670276 5 100 0.0 0.0 0.0 5.0 211 chr3R 24670065 intron slo + chr3R 24670170 intron slo + chr3R 24670276 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-229_75b 947 chr3R 24730108 24730117 chr3R 24732468 24732494 Doc 6 2372 2.0 0.5 1.2 2.7 2386 chr3R 24730108 intron tok + chr3R 24731301 intron tok + chr3R 24732494 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-229_75b 948 chr3R 24832185 24832195 chr3R 24832278 24832300 4 98 0.5 2.5 1.5 1.6 115 chr3R 24832185 intergenic not near genes chr3R 24832242 intergenic not near genes chr3R 24832300 intergenic not near genes chr3R_4_24830001 chr3R_24830001 RAL-229_75b 949 chr3R 24927129 24927155 chr3R 24931920 24931946 Doc 8 4790 0.5 1.0 0.8 4.4 4817 chr3R 24927129 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 RAL-229_75b 950 chr3R 24974915 24974931 chr3R 24974994 24975010 5 78 1.5 5.0 3.2 1.2 95 chr3R 24974915 intergenic not near genes chr3R 24974962 intergenic not near genes chr3R 24975010 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-229_75b 951 chr3R 24982475 24982506 chr3R 24982984 24983015 7 508 4.0 1.5 2.8 1.8 540 chr3R 24982475 intergenic not near genes chr3R 24982745 intergenic not near genes chr3R 24983015 intergenic not near genes chr3R_7_24980001 chr3R_24980001 RAL-229_75b 952 chr3R 25004900 25004918 chr3R 25004983 25005001 4 82 0.0 1.0 0.5 2.7 101 chr3R 25004900 intron tnc + chr3R 25004950 intron tnc + chr3R 25005001 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-229_75b 953 chr3R 25018262 25018292 chr3R 25018333 25018351 7 73 2.0 2.0 2.0 2.3 89 chr3R 25018262 exon tnc + chr3R 25018306 exon tnc + chr3R 25018351 exon tnc + chr3R_7_25015001 chr3R_25015001 RAL-229_75b 954 chr3R 25027538 25027567 chr3R 25027751 25027761 7 210 3.0 1.0 2.0 2.3 223 chr3R 25027538 intron Hr96 + chr3R 25027650 intron Hr96 + chr3R 25027761 intron Hr96 + chr3R_7_25025001 chr3R_25025001 RAL-229_75b 955 chr3R 25188213 25188236 chr3R 25188290 25188312 6 75 3.0 1.0 2.0 2.0 99 chr3R 25188213 intron,intron lobo -,dan + chr3R 25188262 intron,intron lobo -,dan + chr3R 25188312 intron,intron lobo -,dan + chr3R_6_25185001 chr3R_25185001 RAL-229_75b 956 chr3R 25296178 25296192 chr3R 25296247 25296271 11 78 2.0 1.5 1.8 3.9 93 chr3R 25296178 3` UTR CG31097 - chr3R 25296224 3` UTR CG31097 - chr3R 25296271 3` UTR CG31097 - chr3R_11_25295001 chr3R_25295001 RAL-229_75b 957 chr3R 25368474 25368485 chr3R 25368592 25368602 4 118 1.5 0.0 0.8 2.2 128 chr3R 25368474 intron Fur1 - chr3R 25368538 intron Fur1 - chr3R 25368602 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-229_75b 958 chr3R 25377404 25377431 chr3R 25377491 25377519 8 86 3.0 0.0 1.5 3.2 115 chr3R 25377404 intron Fur1 - chr3R 25377462 intron Fur1 - chr3R 25377519 intron Fur1 - chr3R_8_25375001 chr3R_25375001 RAL-229_75b 959 chr3R 25499894 25499916 chr3R 25499972 25499994 5 78 2.0 2.0 2.0 1.7 100 chr3R 25499894 intergenic not near genes chr3R 25499944 intergenic not near genes chr3R 25499994 intergenic not near genes chr3R_5_25495001 chr3R_25495001 RAL-229_75b 960 chr3R 25703843 25703874 chr3R 25703923 25703953 7 81 1.5 1.5 1.5 2.8 110 chr3R 25703843 intron LpR2 - chr3R 25703898 intron LpR2 - chr3R 25703953 intron LpR2 - chr3R_7_25700001 chr3R_25700001 RAL-229_75b 961 chr3R 25765881 25765888 chr3R 25765960 25765967 4 78 6.0 3.0 4.5 0.7 86 chr3R 25765881 intergenic not near genes chr3R 25765924 intergenic not near genes chr3R 25765967 intergenic not near genes chr3R_4_25765001 chr3R_25765001 RAL-229_75b 962 chr3R 25832688 25832723 chr3R 25841870 25841905 roo 5 9180 2.0 0.5 1.2 2.3 9217 chr3R 25832688 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-229_75b 963 chr3R 25983694 25983717 chr3R 25983792 25983815 9 95 4.5 1.5 3.0 2.2 121 chr3R 25983694 exon Nf1 + chr3R 25983754 intron Nf1 + chr3R 25983815 intron Nf1 + chr3R_9_25980001 chr3R_25980001 RAL-229_75b 964 chr3R 26010193 26010204 chr3R 26010270 26010276 5 74 4.0 6.0 5.0 0.8 83 chr3R 26010193 intergenic not near genes chr3R 26010234 intergenic not near genes chr3R 26010276 intergenic not near genes chr3R_5_26010001 chr3R_26010001 RAL-229_75b 965 chr3R 26144708 26144716 chr3R 26144768 26144794 4 73 1.5 1.5 1.5 1.6 86 chr3R 26144708 intergenic not near genes chr3R 26144751 intergenic not near genes chr3R 26144794 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-229_75b 966 chr3R 26214332 26214355 chr3R 26214412 26214432 9 80 2.5 1.5 2.0 3.0 100 chr3R 26214332 intergenic not near genes chr3R 26214382 intergenic not near genes chr3R 26214432 intergenic not near genes chr3R_9_26210001 chr3R_26210001 RAL-229_75b 967 chr3R 26294715 26294749 chr3R 26294793 26294823 8 75 1.0 3.5 2.2 2.5 108 chr3R 26294715 intergenic not near genes chr3R 26294769 intergenic not near genes chr3R 26294823 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-229_75b 968 chr3R 26376329 26376352 chr3R 26385489 26385510 roo 6 9159 1.0 0.0 0.5 4.0 9181 chr3R 26376329 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-229_75b 969 chr3R 26394551 26394568 chr3R 26394699 26394700 4 142 0.5 4.0 2.2 1.2 149 chr3R 26394551 intergenic not near genes chr3R 26394626 intergenic not near genes chr3R 26394700 intergenic not near genes chr3R_4_26390001 chr3R_26390001 RAL-229_75b 970 chr3R 26409921 26409926 chr3R 26410007 26410010 4 86 3.5 0.5 2.0 1.3 89 chr3R 26409921 intergenic not near genes chr3R 26409966 intergenic not near genes chr3R 26410010 intergenic not near genes chr3R_4_26405001 chr3R_26405001 RAL-229_75b 971 chr3R 26456656 26456673 chr3R 26456732 26456751 4 73 1.5 3.5 2.5 1.1 95 chr3R 26456656 intergenic CG14237 + chr3R 26456704 intergenic CG14237 + chr3R 26456751 intergenic CG14237 + chr3R_4_26455001 chr3R_26455001 RAL-229_75b 972 chr3R 26642733 26642760 chr3R 26643126 26643154 jockey 4 393 0.5 4.0 2.2 1.2 421 chr3R 26642733 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-229_75b 973 chr3R 26651527 26651542 chr3R 26651612 26651618 5 83 2.0 2.5 2.2 1.6 91 chr3R 26651527 intron beat-VII - chr3R 26651572 intron beat-VII - chr3R 26651618 intron beat-VII - chr3R_5_26650001 chr3R_26650001 RAL-229_75b 974 chr3R 26703270 26703287 chr3R 26703367 26703380 5 96 3.0 0.0 1.5 2.0 110 chr3R 26703270 intron amon - chr3R 26703325 intron amon - chr3R 26703380 intron amon - chr3R_5_26700001 chr3R_26700001 RAL-229_75b 975 chr3R 26844715 26844738 chr3R 26844794 26844817 9 79 3.5 1.5 2.5 2.6 102 chr3R 26844715 intron Lerp - chr3R 26844766 intron Lerp - chr3R 26844817 intron Lerp - chr3R_9_26840001 chr3R_26840001 RAL-229_75b 976 chr3R 26845572 26845605 chr3R 26845650 26845680 10 79 1.0 3.5 2.2 3.1 108 chr3R 26845572 intron Lerp - chr3R 26845626 intron Lerp - chr3R 26845680 intron Lerp - chr3R_10_26845001 chr3R_26845001 RAL-229_75b 977 chr3R 27028735 27028749 chr3R 27028806 27028828 4 77 2.5 3.0 2.8 1.1 93 chr3R 27028735 intron RYa-R + chr3R 27028782 intron RYa-R + chr3R 27028828 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-229_75b 978 chr3R 27030222 27030246 chr3R 27030351 27030373 7 127 2.0 0.0 1.0 3.5 151 chr3R 27030222 intron RYa-R + chr3R 27030298 intron RYa-R + chr3R 27030373 intron RYa-R + chr3R_7_27030001 chr3R_27030001 RAL-229_75b 979 chr3R 27140514 27140546 chr3R 27148123 27148147 412 11 7607 3.5 4.0 3.8 2.3 7633 chr3R 27140514 intron CG6051 - chr3R 27144330 intron CG6051 - chr3R 27148147 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-229_75b 980 chr3R 27200157 27200193 chr3R 27200243 27200278 10 85 0.5 2.5 1.5 4.0 121 chr3R 27200157 intergenic not near genes chr3R 27200218 intergenic not near genes chr3R 27200278 intergenic not near genes chr3R_10_27200001 chr3R_27200001 RAL-229_75b 981 chr3R 27309656 27309684 chr3R 27309885 27309912 8 229 1.5 2.0 1.8 2.9 256 chr3R 27309656 intron CG3339 - chr3R 27309784 intron CG3339 - chr3R 27309912 intron CG3339 - chr3R_8_27305001 chr3R_27305001 RAL-229_75b 982 chr3R 27335947 27335962 chr3R 27336028 27336043 6 81 0.5 1.0 0.8 3.3 96 chr3R 27335947 intergenic not near genes chr3R 27335995 intergenic not near genes chr3R 27336043 intergenic not near genes chr3R_6_27335001 chr3R_27335001 RAL-229_75b 983 chr3R 27342791 27342823 chr3R 27351372 27351400 Tirant 11 8579 1.0 0.0 0.5 7.3 8609 chr3R 27342791 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-229_75b 984 chr3R 27492378 27492410 chr3R 27492465 27492497 5 87 0.5 0.5 0.5 3.3 119 chr3R 27492378 intergenic not near genes chr3R 27492438 intergenic not near genes chr3R 27492497 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-229_75b 985 chr3R 27644249 27644279 chr3R 27644341 27644371 9 92 2.0 2.0 2.0 3.0 122 chr3R 27644249 intron tau - chr3R 27644310 intron tau - chr3R 27644371 intron tau - chr3R_9_27640001 chr3R_27640001 RAL-229_75b 986 chr3R 27648604 27648865 chr3R 27648676 27648941 7 77 1.5 0.0 0.8 3.9 337 chr3R 27648604 intron tau - chr3R 27648772 intron tau - chr3R 27648941 intron tau - chr3R_7_27645001 chr3R_27645001 RAL-229_75b 987 chr3R 27799947 27799959 chr3R 27800029 27800041 4 82 0.5 3.0 1.8 1.4 94 chr3R 27799947 intron CG34353 - chr3R 27799994 intron CG34353 - chr3R 27800041 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-229_75b 988 chr3R 27812452 27812457 chr3R 27812526 27812534 5 76 1.0 5.5 3.2 1.2 82 chr3R 27812452 intron CG34353 - chr3R 27812493 intron CG34353 - chr3R 27812534 intron CG34353 - chr3R_5_27810001 chr3R_27810001 RAL-229_75b 989 chr3R 27856760 27856789 chr3R 27858243 27858271 hopper2 6 1482 2.5 1.5 2.0 2.0 1511 chr3R 27856760 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-229_75b 990 chr3R 27875711 27875732 chr3R 27882754 27882769 297 6 7049 1.5 2.5 2.0 2.0 7058 chr3R 27875711 intron CG34353 - chr3R 27879240 intron CG34353 - chr3R 27882769 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-229_75b 991 chr3R 27891463 27891472 chr3R 27891545 27891552 6 86 2.5 3.0 2.8 1.6 89 chr3R 27891463 intron CG34353 - chr3R 27891508 intron CG34353 - chr3R 27891552 intron CG34353 - chr3R_6_27890001 chr3R_27890001 RAL-229_75b 992 chr3R 28068501 28068520 chr3R 28073939 28073962 I-element 4 5437 2.5 1.0 1.8 1.4 5461 chr3R 28068501 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073962 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-229_75b 993 chr3R 28253344 28253371 chr3R 28255853 28255881 jockey 7 2509 2.0 5.5 3.8 1.5 2537 chr3R 28253344 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-229_75b 994 chr3R 28302104 28302134 chr3R 28302543 28302571 jockey 8 438 1.5 2.0 1.8 2.9 467 chr3R 28302104 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302571 intergenic not near genes chr3R_8_28300001 chr3R_28300001 RAL-229_75b 995 chr3R 28406582 28406595 chr3R 28406859 28406860 4 273 2.0 2.0 2.0 1.3 278 chr3R 28406582 intergenic not near genes chr3R 28406721 intergenic not near genes chr3R 28406860 intergenic not near genes chr3R_4_28405001 chr3R_28405001 RAL-229_75b 996 chr3R 28484353 28484368 chr3R 28486270 28486292 31 1918 30.5 52.0 41.2 0.7 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_31_28485001 chr3R_28485001 RAL-229_75b 997 chr3R 28658100 28658123 chr3R 28658180 28658185 5 76 2.0 2.5 2.2 1.6 85 chr3R 28658100 intergenic not near genes chr3R 28658142 intergenic not near genes chr3R 28658185 intergenic not near genes chr3R_5_28655001 chr3R_28655001 RAL-229_75b 998 chr3R 21907534 21907536 chr3R 28831799 28831804 61 6924266 12.0 11.5 11.8 4.8 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_61_25365001 chr3R_25365001 RAL-229_75b 999 chr3R 28989907 28989933 chr3R 28990078 28990105 4 173 0.5 1.0 0.8 2.2 198 chr3R 28989907 intergenic not near genes chr3R 28990006 intergenic not near genes chr3R 28990105 intergenic not near genes chr3R_4_28990001 chr3R_28990001 RAL-229_75b 1000 chr3R 29009956 29009983 chr3R 29010062 29010089 5 104 2.0 2.5 2.2 1.6 133 chr3R 29009956 intron wat - chr3R 29010022 intron wat - chr3R 29010089 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-229_75b 1001 chr3R 29032751 29032765 chr3R 29032825 29032842 5 76 4.5 1.0 2.8 1.3 91 chr3R 29032751 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032796 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032842 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-229_75b 1002 chr3R 29032766 29032777 chr3R 29032821 29032838 4 66 3.0 1.0 2.0 1.3 72 chr3R 29032766 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032802 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032838 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-229_75b 1003 chr3R 29190658 29190687 chr3R 29190734 29190763 5 76 2.5 1.0 1.8 1.8 105 chr3R 29190658 intron CG14509 - chr3R 29190710 intron CG14509 - chr3R 29190763 intron CG14509 - chr3R_5_29190001 chr3R_29190001 RAL-229_75b 1004 chr3R 29213062 29213089 chr3R 29213144 29213172 6 82 1.0 3.0 2.0 2.0 110 chr3R 29213062 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213172 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-229_75b 1005 chr3R 29238780 29238788 chr3R 29238893 29238902 4 114 3.5 3.0 3.2 1.0 122 chr3R 29238780 intergenic CG31427 -,CG11951 - chr3R 29238841 3` UTR CG31427 - chr3R 29238902 3` UTR CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-229_75b 1006 chr3R 29332288 29332305 chr3R 29332362 29332382 8 76 2.5 0.0 1.2 3.6 94 chr3R 29332288 intergenic not near genes chr3R 29332335 intergenic not near genes chr3R 29332382 intergenic not near genes chr3R_8_29330001 chr3R_29330001 RAL-229_75b 1007 chr3R 29406611 29406648 chr3R 29407897 29407906 jockey 4 1279 1.0 1.5 1.2 1.8 1295 chr3R 29406611 intron Ptp99A + chr3R 29407258 intron Ptp99A + chr3R 29407906 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-229_75b 1008 chr3R 29498653 29498681 chr3R 29498723 29498757 6 74 3.0 0.5 1.8 2.1 104 chr3R 29498653 exon CG2010 + chr3R 29498705 3` UTR CG2010 + chr3R 29498757 3` UTR CG2010 + chr3R_6_29495001 chr3R_29495001 RAL-229_75b 1009 chr3R 29505911 29505926 chr3R 29505988 29506002 6 76 1.5 2.5 2.0 2.0 91 chr3R 29505911 intergenic not near genes chr3R 29505956 intergenic not near genes chr3R 29506002 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-229_75b 1010 chr3R 29546756 29546782 chr3R 29546829 29546840 7 69 2.0 0.5 1.2 3.2 84 chr3R 29546756 intergenic not near genes chr3R 29546798 intergenic not near genes chr3R 29546840 intergenic not near genes chr3R_7_29545001 chr3R_29545001 RAL-229_75b 1011 chr3R 29627576 29627594 chr3R 29627652 29627685 5 82 0.5 2.5 1.5 2.0 109 chr3R 29627576 intergenic not near genes chr3R 29627630 intergenic not near genes chr3R 29627685 intergenic not near genes chr3R_5_29625001 chr3R_29625001 RAL-229_75b 1012 chr3R 29716993 29717026 chr3R 29717069 29717100 9 74 3.0 1.5 2.2 2.8 107 chr3R 29716993 intergenic Obp99b - chr3R 29717046 intergenic Obp99b - chr3R 29717100 intergenic Obp99b - chr3R_9_29715001 chr3R_29715001 RAL-229_75b 1013 chr3R 29717915 29717928 chr3R 29718050 29718050 4 132 2.5 0.5 1.5 1.6 135 chr3R 29717915 intergenic not near genes chr3R 29717982 intergenic not near genes chr3R 29718050 intergenic not near genes chr3R_4_29715001 chr3R_29715001 RAL-229_75b 1014 chr3R 29738272 29738287 chr3R 29739738 29739754 hobo 6 1466 2.0 2.5 2.2 1.9 1482 chr3R 29738272 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739754 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-229_75b 1015 chr3R 29854827 29854855 chr3R 29854907 29854935 7 78 2.0 1.5 1.8 2.5 108 chr3R 29854827 3` UTR dgt1 - chr3R 29854881 exon dgt1 - chr3R 29854935 exon dgt1 - chr3R_7_29850001 chr3R_29850001 RAL-229_75b 1016 chr3R 29882018 29882047 chr3R 29891175 29891204 roo 11 9155 1.5 2.5 2.0 3.7 9186 chr3R 29882018 intron CG31038 + chr3R 29886611 intron CG31038 + chr3R 29891204 intron CG31038 + chr3R_11_29885001 chr3R_29885001 RAL-229_75b 1017 chr3R 29923621 29923639 chr3R 29925468 29925486 5 1847 5.5 15.5 10.5 0.4 1865 chr3R 29923621 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924554 exon Jon99Cii - chr3R 29925486 exon Jon99Ci - chr3R_5_29920001 chr3R_29920001 RAL-229_75b 1018 chr3R 29950579 29950597 chr3R 29950655 29950674 4 76 2.0 1.5 1.8 1.4 95 chr3R 29950579 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950674 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-229_75b 1019 chr3R 29963491 29963512 chr3R 29963578 29963614 4 98 2.0 3.0 2.5 1.1 123 chr3R 29963491 intron TkR99D - chr3R 29963552 intron TkR99D - chr3R 29963614 intron TkR99D - chr3R_4_29960001 chr3R_29960001 RAL-229_75b 1020 chr3R 30075573 30075589 chr3R 30075662 30075678 4 88 0.5 4.5 2.5 1.1 105 chr3R 30075573 intron sima + chr3R 30075626 intron sima + chr3R 30075678 intron sima + chr3R_4_30075001 chr3R_30075001 RAL-229_75b 1021 chr3R 30084857 30084885 chr3R 30086323 30086340 hobo 8 1465 4.0 3.0 3.5 1.8 1483 chr3R 30084857 intron sima + chr3R 30085598 intron sima + chr3R 30086340 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-229_75b 1022 chr3R 30170764 30170792 chr3R 30170851 30170879 8 86 1.0 4.5 2.8 2.1 115 chr3R 30170764 intron CG31028 - chr3R 30170822 intron CG31028 - chr3R 30170879 intron CG31028 - chr3R_8_30170001 chr3R_30170001 RAL-229_75b 1023 chr3R 30181109 30181135 chr3R 30181182 30181199 5 73 0.5 2.5 1.5 2.0 90 chr3R 30181109 3` UTR Bet5 + chr3R 30181154 3` UTR Bet5 + chr3R 30181199 3` UTR Bet5 + chr3R_5_30180001 chr3R_30180001 RAL-229_75b 1024 chr3R 30317326 30317358 chr3R 30324917 30324950 roo 4 7589 0.0 2.5 1.2 1.8 7624 chr3R 30317326 intron hdc + chr3R 30321138 intron hdc + chr3R 30324950 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-229_75b 1025 chr3R 30396225 30396247 chr3R 30404491 30404512 roo 6 8264 2.5 1.0 1.8 2.1 8287 chr3R 30396225 intergenic not near genes chr3R 30400368 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-229_75b 1026 chr3R 30438434 30438462 chr3R 30438511 30438537 7 76 2.0 0.0 1.0 3.5 103 chr3R 30438434 intron CG15537 - chr3R 30438486 intron CG15537 - chr3R 30438537 intron CG15537 - chr3R_7_30435001 chr3R_30435001 RAL-229_75b 1027 chr3R 30451903 30451933 chr3R 30452091 30452121 5 188 0.0 1.0 0.5 3.3 218 chr3R 30451903 intron aralar1 - chr3R 30452012 intron aralar1 - chr3R 30452121 intron aralar1 - chr3R_5_30450001 chr3R_30450001 RAL-229_75b 1028 chr3R 30466707 30466728 chr3R 30466787 30466805 9 79 4.0 6.5 5.2 1.5 98 chr3R 30466707 intron PH4alphaEFB + chr3R 30466756 intron PH4alphaEFB + chr3R 30466805 intron PH4alphaEFB + chr3R_9_30465001 chr3R_30465001 RAL-229_75b 1029 chr3R 30480481 30480511 chr3R 30482942 30482979 jockey 8 2467 3.5 2.5 3.0 2.0 2498 chr3R 30480481 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-229_75b 1030 chr3R 30485038 30485068 chr3R 30485114 30485144 7 76 0.5 1.5 1.0 3.5 106 chr3R 30485038 intron PH4alphaEFB + chr3R 30485091 intron PH4alphaEFB + chr3R 30485144 intron PH4alphaEFB + chr3R_7_30485001 chr3R_30485001 RAL-229_75b 1031 chr3R 30627622 30627637 chr3R 30627683 30627715 8 76 2.0 2.5 2.2 2.5 93 chr3R 30627622 exon CG2267 - chr3R 30627668 exon CG2267 - chr3R 30627715 exon CG2267 - chr3R_8_30625001 chr3R_30625001 RAL-229_75b 1032 chr3R 30656893 30656897 chr3R 30656969 30656972 4 76 0.0 2.5 1.2 1.8 79 chr3R 30656893 intergenic not near genes chr3R 30656932 intergenic not near genes chr3R 30656972 intergenic not near genes chr3R_4_30655001 chr3R_30655001 RAL-229_75b 1033 chr3R 30798330 30798339 chr3R 30798396 30798421 6 78 1.5 3.5 2.5 1.7 91 chr3R 30798330 intron wts - chr3R 30798376 intron wts - chr3R 30798421 intron wts - chr3R_6_30795001 chr3R_30795001 RAL-229_75b 1034 chr3R 30859411 30859427 chr3R 30859489 30859503 5 78 2.5 0.5 1.5 2.0 92 chr3R 30859411 intergenic not near genes chr3R 30859457 intergenic not near genes chr3R 30859503 intergenic not near genes chr3R_5_30855001 chr3R_30855001 RAL-229_75b 1035 chr3R 30948078 30948097 chr3R 30948269 30948287 6 189 0.5 2.0 1.2 2.7 209 chr3R 30948078 intergenic not near genes chr3R 30948182 intergenic not near genes chr3R 30948287 intergenic not near genes chr3R_6_30945001 chr3R_30945001 RAL-229_75b 1036 chr3R 30994121 30994153 chr3R 30994231 30994263 8 107 1.5 0.5 1.0 4.0 142 chr3R 30994121 intron 5-HT7 - chr3R 30994192 intron 5-HT7 - chr3R 30994263 intron 5-HT7 - chr3R_8_30990001 chr3R_30990001 RAL-229_75b 1037 chr3R 31150261 31150288 chr3R 31150341 31150367 5 80 1.5 2.5 2.0 1.7 106 chr3R 31150261 intron Gycbeta100B + chr3R 31150314 intron Gycbeta100B + chr3R 31150367 intron Gycbeta100B + chr3R_5_31150001 chr3R_31150001 RAL-229_75b 1038 chr3R 31150289 31150295 chr3R 31150339 31150355 5 60 1.0 2.0 1.5 2.0 66 chr3R 31150289 intron Gycbeta100B + chr3R 31150322 intron Gycbeta100B + chr3R 31150355 intron Gycbeta100B + chr3R_5_31150001 chr3R_31150001 RAL-229_75b 1039 chr3R 31279386 31279408 chr3R 31285573 31285574 diver 7 6186 1.5 3.5 2.5 2.0 6188 chr3R 31279386 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285574 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-229_75b 1040 chr3R 31413102 31413122 chr3R 31418300 31418321 copia 5 5199 1.0 3.0 2.0 1.7 5219 chr3R 31413102 intron Gprk2 + chr3R 31415712 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-229_75b 1041 chr3R 31426885 31426908 chr3R 31426977 31426991 9 90 3.0 2.0 2.5 2.6 106 chr3R 31426885 intron Gprk2 + chr3R 31426938 intron Gprk2 + chr3R 31426991 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-229_75b 1042 chr3R 31442270 31442292 chr3R 31442354 31442376 10 83 4.0 1.0 2.5 2.9 106 chr3R 31442270 intron Gprk2 + chr3R 31442323 intron Gprk2 + chr3R 31442376 intron Gprk2 + chr3R_10_31440001 chr3R_31440001 RAL-229_75b 1043 chr3R 31538495 31538513 chr3R 31538573 31538591 4 78 2.0 1.0 1.5 1.6 96 chr3R 31538495 intergenic not near genes chr3R 31538543 intergenic not near genes chr3R 31538591 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-229_75b 1044 chr3R 31608849 31608880 chr3R 31608946 31608977 9 97 2.5 2.0 2.2 2.8 128 chr3R 31608849 intron CycG - chr3R 31608913 intron CycG - chr3R 31608977 intron CycG - chr3R_9_31605001 chr3R_31605001 RAL-229_75b 1045 chr3R 31670614 31670628 chr3R 31670708 31670721 4 93 1.5 2.0 1.8 1.4 107 chr3R 31670614 intron CG1815 + chr3R 31670668 intron CG1815 + chr3R 31670721 intron CG1815 + chr3R_4_31670001 chr3R_31670001 RAL-229_75b 1046 chr3R 31691532 31691563 chr3R 31696297 31696324 Doc 11 4760 1.0 3.0 2.0 3.7 4792 chr3R 31691532 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696324 intergenic not near genes chr3R_11_31690001 chr3R_31690001 RAL-229_75b 1047 chr3R 31831540 31831566 chr3R 31831619 31831628 11 76 4.5 5.5 5.0 1.8 88 chr3R 31831540 intron RhoGAP100F + chr3R 31831584 intron RhoGAP100F + chr3R 31831628 intron RhoGAP100F + chr3R_11_31830001 chr3R_31830001 RAL-229_75b 1048 chr3R 31949506 31949535 chr3R 31949592 31949621 6 83 1.0 1.5 1.2 2.7 115 chr3R 31949506 intron heph - chr3R 31949564 intron heph - chr3R 31949621 intron heph - chr3R_6_31945001 chr3R_31945001 RAL-229_75b 1049 chr3R 32022329 32022351 chr3R 32022429 32022453 8 98 2.0 2.0 2.0 2.7 124 chr3R 32022329 5` UTR CR45557 + chr3R 32022391 5` UTR CR45557 + chr3R 32022453 5` UTR CR45557 + chr3R_8_32020001 chr3R_32020001 RAL-229_75b 1050 chr4 654370 654398 chr4 654452 654481 4 82 1.0 0.5 0.8 2.2 111 chr4 654370 intron gw - chr4 654426 intron gw - chr4 654481 intron gw - chr4_4_650001 chr4_650001 RAL-229_75b 1051 chr4 671607 671632 chr4 680189 680214 Tirant 4 8582 2.0 3.0 2.5 1.1 8607 chr4 671607 intron CG11360 + chr4 675910 intron CG11360 + chr4 680214 intron CG11360 + chr4_4_675001 chr4_675001 RAL-229_75b 1052 chr4 896784 896817 chr4 896861 896886 6 72 1.0 0.5 0.8 3.3 102 chr4 896784 intron unc-13 - chr4 896835 intron unc-13 - chr4 896886 intron unc-13 - chr4_6_895001 chr4_895001 RAL-229_75b 1053 chrX 295861 295872 chrX 303480 303492 412 4 7619 3.5 3.0 3.2 1.0 7631 chrX 295861 intron CG3777 + chrX 299676 intron CG3777 + chrX 303492 intron CG3777 + chrX_4_295001 chrX_295001 RAL-229_75b 1054 chrX 367036 367068 chrX 367133 367164 5 97 1.0 0.0 0.5 3.3 128 chrX 367036 intron,5` UTR CG32816 -,yar + chrX 367100 intron CG32816 - chrX 367164 intron CG32816 - chrX_5_365001 chrX_365001 RAL-229_75b 1055 chrX 428419 428452 chrX 434603 434637 3S18 8 6184 2.0 0.0 1.0 4.0 6218 chrX 428419 intron CG32816 - chrX 431528 intron CG32816 - chrX 434637 intron CG32816 - chrX_8_430001 chrX_430001 RAL-229_75b 1056 chrX 440998 441024 chrX 441076 441098 6 76 0.5 2.5 1.5 2.4 100 chrX 440998 intron CG32816 - chrX 441048 intron CG32816 - chrX 441098 intron CG32816 - chrX_6_440001 chrX_440001 RAL-229_75b 1057 chrX 450365 450387 chrX 450443 450453 4 75 1.0 0.5 0.8 2.2 88 chrX 450365 intron CG32816 - chrX 450409 intron CG32816 - chrX 450453 intron CG32816 - chrX_4_450001 chrX_450001 RAL-229_75b 1058 chrX 670262 670292 chrX 670342 670372 5 78 1.0 1.0 1.0 2.5 110 chrX 670262 intergenic not near genes chrX 670317 intergenic not near genes chrX 670372 intergenic not near genes chrX_5_670001 chrX_670001 RAL-229_75b 1059 chrX 680841 680865 chrX 680924 680935 6 79 1.0 0.5 0.8 3.3 94 chrX 680841 intergenic not near genes chrX 680888 intergenic not near genes chrX 680935 intergenic not near genes chrX_6_680001 chrX_680001 RAL-229_75b 1060 chrX 695295 695319 chrX 695372 695389 4 71 3.0 3.0 3.0 1.0 94 chrX 695295 intron sdk + chrX 695342 intron sdk + chrX 695389 intron sdk + chrX_4_695001 chrX_695001 RAL-229_75b 1061 chrX 706807 706826 chrX 707168 707178 6 361 0.0 3.0 1.5 2.4 371 chrX 706807 intron sdk + chrX 706992 intron sdk + chrX 707178 intron sdk + chrX_6_705001 chrX_705001 RAL-229_75b 1062 chrX 715300 715317 chrX 715365 715375 4 62 3.0 2.5 2.8 1.1 75 chrX 715300 intron sdk + chrX 715338 intron sdk + chrX 715375 intron sdk + chrX_4_715001 chrX_715001 RAL-229_75b 1063 chrX 778126 778150 chrX 778215 778236 5 89 4.0 0.0 2.0 1.7 110 chrX 778126 intron fz3 + chrX 778181 intron fz3 + chrX 778236 intron fz3 + chrX_5_775001 chrX_775001 RAL-229_75b 1064 chrX 806782 806802 chrX 806878 806896 5 93 3.0 2.5 2.8 1.3 114 chrX 806782 intron Sec22 + chrX 806839 intron Sec22 + chrX 806896 intron Sec22 + chrX_5_805001 chrX_805001 RAL-229_75b 1065 chrX 906701 906710 chrX 908490 908499 S-element 4 1789 3.0 2.0 2.5 1.1 1798 chrX 906701 intron CG43867 - chrX 907600 intron CG43867 - chrX 908499 intron CG43867 - chrX_4_905001 chrX_905001 RAL-229_75b 1066 chrX 1357788 1357797 chrX 1367958 1367966 Doc 5 10170 1.5 1.5 1.5 2.0 10178 chrX 1357788 intergenic png - chrX 1362877 intergenic not near genes chrX 1367966 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-229_75b 1067 chrX 1750627 1750643 chrX 1750724 1750739 6 96 2.0 2.5 2.2 1.9 112 chrX 1750627 intron Scgdelta - chrX 1750683 intron Scgdelta - chrX 1750739 intron Scgdelta - chrX_6_1750001 chrX_1750001 RAL-229_75b 1068 chrX 1987496 1987498 chrX 1987599 1987601 4 104 3.0 2.5 2.8 1.1 105 chrX 1987496 intron Hr4 + chrX 1987548 intron Hr4 + chrX 1987601 intron Hr4 + chrX_4_1985001 chrX_1985001 RAL-229_75b 1069 chrX 2506955 2506964 chrX 2507039 2507058 4 90 1.0 1.0 1.0 2.0 103 chrX 2506955 intron trol - chrX 2507006 intron trol - chrX 2507058 intron trol - chrX_4_2505001 chrX_2505001 RAL-229_75b 1070 chrX 2578828 2578845 chrX 2578899 2578937 7 86 1.0 2.0 1.5 2.8 109 chrX 2578828 intergenic Pdfr +,Vha36-3 - chrX 2578882 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-229_75b 1071 chrX 2664383 2664417 chrX 2665529 2665563 1360 7 1144 1.0 1.0 1.0 3.5 1180 chrX 2664383 intron sgg + chrX 2664973 intron sgg + chrX 2665563 intron sgg + chrX_7_2660001 chrX_2660001 RAL-229_75b 1072 chrX 2950026 2950061 chrX 2950356 2950380 5 318 0.5 2.5 1.5 2.0 354 chrX 2950026 intron kirre + chrX 2950203 intron kirre + chrX 2950380 intron kirre + chrX_5_2950001 chrX_2950001 RAL-229_75b 1073 chrX 3075642 3075660 chrX 3080944 3080966 Transpac 4 5304 1.5 0.5 1.0 2.0 5324 chrX 3075642 intron kirre + chrX 3078304 intron kirre + chrX 3080966 intron kirre + chrX_4_3075001 chrX_3075001 RAL-229_75b 1074 chrX 3306061 3306345 chrX 3306170 3306427 7 106 2.5 2.5 2.5 2.0 366 chrX 3306061 intron dnc + chrX 3306244 intron dnc + chrX 3306427 intron dnc + chrX_7_3305001 chrX_3305001 RAL-229_75b 1075 chrX 3408987 3409016 chrX 3409064 3409076 9 75 0.0 1.5 0.8 5.0 89 chrX 3408987 intron,intron CR44999 +,CG12535 - chrX 3409032 intron,intron CR44999 +,CG12535 - chrX 3409076 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-229_75b 1076 chrX 3535410 3535421 chrX 3535499 3535512 4 90 2.5 1.5 2.0 1.3 102 chrX 3535410 intron CG32791 - chrX 3535461 intron CG32791 - chrX 3535512 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-229_75b 1077 chrX 3597555 3597581 chrX 3619723 3619749 roo 6 22167 2.5 3.5 3.0 1.5 22194 chrX 3597555 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-229_75b 1078 chrX 3726776 3726795 chrX 3730172 3730192 NOF 4 3396 1.0 0.0 0.5 2.7 3416 chrX 3726776 intron tlk + chrX 3728484 intron tlk + chrX 3730192 intron tlk + chrX_4_3725001 chrX_3725001 RAL-229_75b 1079 chrX 4047468 4047503 chrX 4047581 4047612 8 112 1.5 0.5 1.0 4.0 144 chrX 4047468 intergenic CR45482 - chrX 4047540 intergenic CR45482 - chrX 4047612 3` UTR CR45482 - chrX_8_4045001 chrX_4045001 RAL-229_75b 1080 chrX 4048500 4048523 chrX 4048575 4048599 4 71 0.5 1.0 0.8 2.2 99 chrX 4048500 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048599 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-229_75b 1081 chrX 4132664 4132698 chrX 4132832 4132852 5 165 0.5 0.5 0.5 3.3 188 chrX 4132664 3` UTR GlcAT-I + chrX 4132758 3` UTR GlcAT-I + chrX 4132852 intergenic GlcAT-I +,Fas2 - chrX_5_4130001 chrX_4130001 RAL-229_75b 1082 chrX 4515841 4515859 chrX 4515919 4515936 7 78 0.0 2.5 1.2 3.2 95 chrX 4515841 intron CR32773 - chrX 4515888 intron CR32773 - chrX 4515936 intron CR32773 - chrX_7_4515001 chrX_4515001 RAL-229_75b 1083 chrX 4827990 4828002 chrX 4835338 4835341 Stalker4 4 7347 1.0 3.5 2.2 1.2 7351 chrX 4827990 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835341 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-229_75b 1084 chrX 5272818 5272848 chrX 5272905 5272935 7 86 0.5 2.0 1.2 3.2 117 chrX 5272818 intergenic not near genes chrX 5272876 intergenic not near genes chrX 5272935 intergenic not near genes chrX_7_5270001 chrX_5270001 RAL-229_75b 1085 chrX 5444539 5444569 chrX 5445075 5445104 6 536 2.5 3.0 2.8 1.6 565 chrX 5444539 intergenic not near genes chrX 5444822 intergenic not near genes chrX 5445104 intergenic not near genes chrX_6_5440001 chrX_5440001 RAL-229_75b 1086 chrX 5473586 5473617 chrX 5473662 5473693 6 74 0.0 1.5 0.8 3.3 107 chrX 5473586 intron SPR + chrX 5473640 intron SPR + chrX 5473693 intron SPR + chrX_6_5470001 chrX_5470001 RAL-229_75b 1087 chrX 6306560 6306579 chrX 6306636 6306656 5 76 1.5 3.0 2.2 1.6 96 chrX 6306560 3` UTR CG3823 + chrX 6306608 3` UTR CG3823 + chrX 6306656 3` UTR CG3823 + chrX_5_6305001 chrX_6305001 RAL-229_75b 1088 chrX 6392871 6392904 chrX 6397636 6397637 Doc 7 4759 2.5 2.5 2.5 2.0 4766 chrX 6392871 intergenic not near genes chrX 6395254 intergenic not near genes chrX 6397637 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-229_75b 1089 chrX 6562830 6562837 chrX 6571312 6571317 Tirant 5 8481 3.5 1.0 2.2 1.6 8487 chrX 6562830 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571317 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-229_75b 1090 chrX 6618463 6618475 chrX 6618541 6618553 5 78 3.5 4.0 3.8 1.0 90 chrX 6618463 intron pigs + chrX 6618508 intron pigs + chrX 6618553 intron pigs + chrX_5_6615001 chrX_6615001 RAL-229_75b 1091 chrX 6737524 6737552 chrX 6737604 6737633 4 79 2.0 2.0 2.0 1.3 109 chrX 6737524 intron CG3168 - chrX 6737578 intron CG3168 - chrX 6737633 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-229_75b 1092 chrX 6897576 6897705 chrX 6897654 6897810 5 89 2.0 2.5 2.2 1.6 234 chrX 6897576 intergenic not near genes chrX 6897693 intergenic not near genes chrX 6897810 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-229_75b 1093 chrX 6989502 6989528 chrX 6989589 6989595 7 84 2.0 3.0 2.5 2.0 93 chrX 6989502 intron ogre - chrX 6989548 intron ogre - chrX 6989595 intron ogre - chrX_7_6985001 chrX_6985001 RAL-229_75b 1094 chrX 7023599 7023623 chrX 7030989 7031013 Tabor 5 7390 3.5 2.5 3.0 1.2 7414 chrX 7023599 intron CG12541 - chrX 7027306 intron CG12541 - chrX 7031013 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-229_75b 1095 chrX 7125253 7125272 chrX 7134411 7134429 roo 5 9158 0.0 2.0 1.0 2.5 9176 chrX 7125253 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134429 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-229_75b 1096 chrX 7255235 7255257 chrX 7255340 7255362 5 104 1.5 2.0 1.8 1.8 127 chrX 7255235 intron CR44357 - chrX 7255298 intron CR44357 - chrX 7255362 intron CR44357 - chrX_5_7255001 chrX_7255001 RAL-229_75b 1097 chrX 7702906 7702932 chrX 7703342 7703371 jockey 7 438 1.5 5.0 3.2 1.7 465 chrX 7702906 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703371 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-229_75b 1098 chrX 7749481 7749500 chrX 7749613 7749629 4 131 2.5 2.0 2.2 1.2 148 chrX 7749481 intergenic not near genes chrX 7749555 intergenic not near genes chrX 7749629 intergenic not near genes chrX_4_7745001 chrX_7745001 RAL-229_75b 1099 chrX 7845726 7845756 chrX 7847217 7847247 hopper2 6 1491 3.0 3.0 3.0 1.5 1521 chrX 7845726 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847247 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-229_75b 1100 chrX 8085573 8085602 chrX 8085659 8085688 5 86 1.0 0.5 0.8 2.8 115 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085688 intron,5` UTR CG2256 -,CR45535 + chrX_5_8085001 chrX_8085001 RAL-229_75b 1101 chrX 8275326 8275346 chrX 8275411 8275433 5 86 0.0 6.0 3.0 1.2 107 chrX 8275326 exon CG1636 + chrX 8275380 3` UTR CG1636 + chrX 8275433 3` UTR CG1636 + chrX_5_8275001 chrX_8275001 RAL-229_75b 1102 chrX 8877785 8877802 chrX 8877909 8877926 5 124 1.5 0.5 1.0 2.5 141 chrX 8877785 intron Moe - chrX 8877856 intron Moe - chrX 8877926 intron Moe - chrX_5_8875001 chrX_8875001 RAL-229_75b 1103 chrX 8922351 8922359 chrX 8922785 8922793 jockey 6 434 1.0 4.0 2.5 1.7 442 chrX 8922351 intron rdgA + chrX 8922572 intron rdgA + chrX 8922793 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-229_75b 1104 chrX 8971885 8971915 chrX 8971964 8971994 6 78 0.5 2.0 1.2 2.7 109 chrX 8971885 intron rdgA + chrX 8971940 intron rdgA + chrX 8971994 intron rdgA + chrX_6_8970001 chrX_8970001 RAL-229_75b 1105 chrX 9229905 9229940 chrX 9229985 9230017 9 79 0.5 1.0 0.8 5.0 112 chrX 9229905 intron CG12121 - chrX 9229961 intron CG12121 - chrX 9230017 intron CG12121 - chrX_9_9225001 chrX_9225001 RAL-229_75b 1106 chrX 9508138 9508168 chrX 9509656 9509677 jockey 6 1516 0.5 1.0 0.8 3.3 1539 chrX 9508138 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509677 intron CG32700 - chrX_6_9505001 chrX_9505001 RAL-229_75b 1107 chrX 9537115 9537129 chrX 9537370 9537386 5 257 3.0 5.0 4.0 1.0 271 chrX 9537115 intron CG32700 - chrX 9537250 intron CG32700 - chrX 9537386 intron CG32700 - chrX_5_9535001 chrX_9535001 RAL-229_75b 1108 chrX 9543397 9543424 chrX 9543476 9543503 5 78 1.5 1.5 1.5 2.0 106 chrX 9543397 intron CG32700 - chrX 9543450 intron CG32700 - chrX 9543503 intron CG32700 - chrX_5_9540001 chrX_9540001 RAL-229_75b 1109 chrX 9599177 9599202 chrX 9599253 9599280 5 77 2.0 3.0 2.5 1.4 103 chrX 9599177 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599280 intergenic not near genes chrX_5_9595001 chrX_9595001 RAL-229_75b 1110 chrX 9707454 9707473 chrX 9707536 9707554 5 76 0.5 1.0 0.8 2.8 100 chrX 9707454 intergenic not near genes chrX 9707504 intergenic not near genes chrX 9707554 intergenic not near genes chrX_5_9705001 chrX_9705001 RAL-229_75b 1111 chrX 8382093 8382094 chrX 9845361 9845361 4 1463267 10.5 11.0 10.8 0.3 1463268 chrX 8382093 intergenic not near genes chrX 9113727 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-229_75b 1112 chrX 10138223 10138244 chrX 10145727 10145748 412 5 7503 1.5 1.5 1.5 2.0 7525 chrX 10138223 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145748 intron,intron RhoU +,CR44894 - chrX_5_10140001 chrX_10140001 RAL-229_75b 1113 chrX 10401399 10401430 chrX 10401478 10401510 6 80 0.0 3.0 1.5 2.4 111 chrX 10401399 intron flw + chrX 10401454 intron flw + chrX 10401510 intron flw + chrX_6_10400001 chrX_10400001 RAL-229_75b 1114 chrX 10550857 10550878 chrX 10552323 10552345 hobo 4 1467 3.5 1.0 2.2 1.2 1488 chrX 10550857 intron spri - chrX 10551601 intron spri - chrX 10552345 intron spri - chrX_4_10550001 chrX_10550001 RAL-229_75b 1115 chrX 10694152 10694178 chrX 10694230 10694258 9 78 4.5 4.0 4.2 1.7 106 chrX 10694152 intron X11Lbeta + chrX 10694205 intron X11Lbeta + chrX 10694258 intron X11Lbeta + chrX_9_10690001 chrX_10690001 RAL-229_75b 1116 chrX 10811865 10811897 chrX 10811957 10811989 8 91 1.0 1.5 1.2 3.6 124 chrX 10811865 intron Imp - chrX 10811927 intron Imp - chrX 10811989 intron Imp - chrX_8_10810001 chrX_10810001 RAL-229_75b 1117 chrX 10939413 10939432 chrX 10939516 10939537 5 105 3.0 1.5 2.2 1.6 124 chrX 10939413 intron Myo10A + chrX 10939475 intron Myo10A + chrX 10939537 intron Myo10A + chrX_5_10935001 chrX_10935001 RAL-229_75b 1118 chrX 11051331 11051479 chrX 11051420 11051545 11 84 2.0 1.0 1.5 4.4 214 chrX 11051331 intergenic not near genes chrX 11051438 intergenic not near genes chrX 11051545 intergenic not near genes chrX_11_11050001 chrX_11050001 RAL-229_75b 1119 chrX 11055838 11055858 chrX 11056469 11056489 5 629 2.5 1.0 1.8 1.8 651 chrX 11055838 intergenic not near genes chrX 11056164 intergenic not near genes chrX 11056489 intergenic not near genes chrX_5_11055001 chrX_11055001 RAL-229_75b 1120 chrX 11096000 11096027 chrX 11103102 11103129 HMS-Beagle 4 7097 2.0 2.0 2.0 1.3 7129 chrX 11096000 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103129 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-229_75b 1121 chrX 11166762 11166789 chrX 11166843 11166868 4 77 0.5 2.5 1.5 1.6 106 chrX 11166762 intergenic not near genes chrX 11166815 intergenic not near genes chrX 11166868 intergenic not near genes chrX_4_11165001 chrX_11165001 RAL-229_75b 1122 chrX 11312065 11312083 chrX 11319417 11319436 Stalker2 4 7349 0.5 0.5 0.5 2.7 7371 chrX 11312065 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319436 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-229_75b 1123 chrX 11571457 11571482 chrX 11571694 11571719 pogo 4 237 2.5 5.0 3.8 0.8 262 chrX 11571457 3` UTR Kmn1 - chrX 11571588 3` UTR Kmn1 - chrX 11571719 3` UTR Kmn1 - chrX_4_11570001 chrX_11570001 RAL-229_75b 1124 chrX 11633416 11633447 chrX 11640470 11640501 297 5 7052 1.5 1.5 1.5 2.0 7085 chrX 11633416 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640501 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-229_75b 1125 chrX 12038087 12038116 chrX 12038281 12038310 9 193 3.0 0.5 1.8 3.2 223 chrX 12038087 intergenic not near genes chrX 12038198 intergenic not near genes chrX 12038310 intergenic not near genes chrX_9_12035001 chrX_12035001 RAL-229_75b 1126 chrX 12043838 12043865 chrX 12043924 12043954 5 88 0.5 0.0 0.2 4.2 116 chrX 12043838 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043896 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043954 5` UTR,5` UTR CR43960 +,Ten-a + chrX_5_12040001 chrX_12040001 RAL-229_75b 1127 chrX 12094039 12094065 chrX 12094126 12094145 6 88 2.0 1.0 1.5 2.4 106 chrX 12094039 intron,intron CR43960 +,Ten-a + chrX 12094092 intron,intron CR43960 +,Ten-a + chrX 12094145 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-229_75b 1128 chrX 12176741 12176768 chrX 12176815 12176844 11 75 0.5 5.0 2.8 2.9 103 chrX 12176741 intron,3` UTR Ten-a +,CG1924 - chrX 12176792 intron,3` UTR Ten-a +,CG1924 - chrX 12176844 intron,3` UTR Ten-a +,CG1924 - chrX_11_12175001 chrX_12175001 RAL-229_75b 1129 chrX 12350773 12350805 chrX 12350854 12350886 8 80 2.5 0.0 1.2 3.6 113 chrX 12350773 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350886 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-229_75b 1130 chrX 12679970 12679995 chrX 12680069 12680093 5 99 1.5 2.0 1.8 1.8 123 chrX 12679970 3` UTR Tis11 + chrX 12680032 3` UTR Tis11 + chrX 12680093 3` UTR Tis11 + chrX_5_12680001 chrX_12680001 RAL-229_75b 1131 chrX 13027770 13027784 chrX 13027920 13027923 4 147 2.0 5.0 3.5 0.9 153 chrX 13027770 intron rad + chrX 13027846 intron rad + chrX 13027923 intron rad + chrX_4_13025001 chrX_13025001 RAL-229_75b 1132 chrX 13088086 13088102 chrX 13088606 13088622 4 520 0.0 0.0 0.0 4.0 536 chrX 13088086 intron hep - chrX 13088354 intron hep - chrX 13088622 intron hep - chrX_4_13085001 chrX_13085001 RAL-229_75b 1133 chrX 13172354 13172375 chrX 13172430 13172451 6 76 2.0 1.5 1.8 2.1 97 chrX 13172354 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172451 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-229_75b 1134 chrX 14131491 14131516 chrX 14131572 14131597 4 75 0.5 1.5 1.0 2.0 106 chrX 14131491 intergenic not near genes chrX 14131544 intergenic not near genes chrX 14131597 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-229_75b 1135 chrX 14209469 14209488 chrX 14209559 14209578 5 91 0.0 1.0 0.5 3.3 109 chrX 14209469 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209524 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209578 intron,intron l(1)G0007 +,l(1)G0469 - chrX_5_14205001 chrX_14205001 RAL-229_75b 1136 chrX 14487820 14487850 chrX 14487915 14487945 4 93 1.5 0.0 0.8 2.2 125 chrX 14487820 intergenic not near genes chrX 14487882 intergenic not near genes chrX 14487945 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-229_75b 1137 chrX 14636463 14636491 chrX 14641904 14641929 I-element 6 5440 1.5 2.5 2.0 2.0 5466 chrX 14636463 intron NetA - chrX 14639196 intron NetA - chrX 14641929 intron NetA - chrX_6_14635001 chrX_14635001 RAL-229_75b 1138 chrX 14767960 14767977 chrX 14768040 14768057 5 80 2.5 0.0 1.2 2.3 97 chrX 14767960 intergenic not near genes chrX 14768008 intergenic not near genes chrX 14768057 intergenic not near genes chrX_5_14765001 chrX_14765001 RAL-229_75b 1139 chrX 14774985 14775005 chrX 14775060 14775082 4 76 2.0 1.0 1.5 1.6 97 chrX 14774985 intergenic CG5334 + chrX 14775034 intergenic CG5334 + chrX 14775082 intergenic CG5334 + chrX_4_14775001 chrX_14775001 RAL-229_75b 1140 chrX 14778034 14778057 chrX 14782831 14782854 Doc 5 4797 1.5 1.0 1.2 2.3 4820 chrX 14778034 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782854 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-229_75b 1141 chrX 14813736 14813762 chrX 14813814 14813839 7 77 1.0 0.0 0.5 4.7 103 chrX 14813736 intron rut - chrX 14813788 intron rut - chrX 14813839 intron rut - chrX_7_14810001 chrX_14810001 RAL-229_75b 1142 chrX 14861924 14861944 chrX 14862138 14862159 4 214 6.0 15.0 10.5 0.3 235 chrX 14861924 intron Flo2 + chrX 14862042 intron Flo2 + chrX 14862159 intron Flo2 + chrX_4_14860001 chrX_14860001 RAL-229_75b 1143 chrX 14952449 14952464 chrX 14952605 14952632 6 161 1.5 0.5 1.0 3.0 183 chrX 14952449 intron,3` UTR pdgy -,CR44831 - chrX 14952540 intron,3` UTR pdgy -,CR44831 - chrX 14952632 intron,3` UTR pdgy -,CR44831 - chrX_6_14950001 chrX_14950001 RAL-229_75b 1144 chrX 15248261 15248295 chrX 15248337 15248339 6 68 1.0 0.0 0.5 4.0 78 chrX 15248261 intergenic not near genes chrX 15248300 intergenic not near genes chrX 15248339 intergenic not near genes chrX_6_15245001 chrX_15245001 RAL-229_75b 1145 chrX 15413061 15413079 chrX 15417359 15417380 Juan 4 4300 3.5 2.5 3.0 1.0 4319 chrX 15413061 intron Cngl - chrX 15415220 intron Cngl - chrX 15417380 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-229_75b 1146 chrX 15678055 15678063 chrX 15678129 15678139 6 76 0.5 4.0 2.2 1.9 84 chrX 15678055 intergenic CG12708 + chrX 15678097 intergenic CG12708 + chrX 15678139 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-229_75b 1147 chrX 16570871 16570900 chrX 16570951 16570980 4 76 1.5 1.5 1.5 1.6 109 chrX 16570871 intron CanA-14F - chrX 16570926 intron CanA-14F - chrX 16570980 intron CanA-14F - chrX_4_16570001 chrX_16570001 RAL-229_75b 1148 chrX 17061569 17061600 chrX 17061692 17061723 7 122 2.5 1.0 1.8 2.5 154 chrX 17061569 intron CG45002 - chrX 17061646 intron CG45002 - chrX 17061723 intron CG45002 - chrX_7_17060001 chrX_17060001 RAL-229_75b 1149 chrX 17282883 17282897 chrX 17282958 17282975 6 76 1.5 0.0 0.8 3.3 92 chrX 17282883 intron CG5445 + chrX 17282929 5` UTR CG5445 + chrX 17282975 5` UTR CG5445 + chrX_6_17280001 chrX_17280001 RAL-229_75b 1150 chrX 17352597 17352622 chrX 17352700 17352718 7 99 0.0 1.0 0.5 4.7 121 chrX 17352597 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352718 intergenic not near genes chrX_7_17350001 chrX_17350001 RAL-229_75b 1151 chrX 18749870 18749894 chrX 18749954 18749978 4 84 1.5 1.5 1.5 1.6 108 chrX 18749870 intergenic not near genes chrX 18749924 intergenic not near genes chrX 18749978 intergenic not near genes chrX_4_18745001 chrX_18745001 RAL-229_75b 1152 chrX 18910953 18910984 chrX 18911040 18911051 8 82 2.0 3.5 2.8 2.1 98 chrX 18910953 3` UTR CG7378 + chrX 18911002 3` UTR CG7378 + chrX 18911051 3` UTR CG7378 + chrX_8_18910001 chrX_18910001 RAL-229_75b 1153 chrX 19099658 19099686 chrX 19099740 19099769 4 82 1.0 2.0 1.5 1.6 111 chrX 19099658 intergenic not near genes chrX 19099714 intergenic not near genes chrX 19099769 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-229_75b 1154 chrX 19106829 19106845 chrX 19106904 19106908 4 71 2.0 0.5 1.2 1.8 79 chrX 19106829 intergenic not near genes chrX 19106868 intergenic not near genes chrX 19106908 intergenic not near genes chrX_4_19105001 chrX_19105001 RAL-229_75b 1155 chrX 19125693 19125719 chrX 19125822 19125846 4 128 2.5 3.0 2.8 1.1 153 chrX 19125693 intron tgy - chrX 19125770 intron tgy - chrX 19125846 intron tgy - chrX_4_19125001 chrX_19125001 RAL-229_75b 1156 chrX 13057298 13057299 chrX 19242813 19242813 6 6185514 4.5 5.0 4.8 1.0 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-229_75b 1157 chrX 19281001 19281029 chrX 19281129 19281158 5 128 0.0 1.0 0.5 3.3 157 chrX 19281001 intergenic CG8034 - chrX 19281080 intergenic CG8034 - chrX 19281158 intergenic CG8034 - chrX_5_19280001 chrX_19280001 RAL-229_75b 1158 chrX 19380166 19380188 chrX 19380402 19380429 pogo 5 240 1.0 0.5 0.8 2.8 263 chrX 19380166 intron kek5 + chrX 19380298 intron kek5 + chrX 19380429 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-229_75b 1159 chrX 19384829 19384852 chrX 19384913 19384936 4 84 1.5 1.5 1.5 1.6 107 chrX 19384829 intron kek5 + chrX 19384882 intron kek5 + chrX 19384936 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-229_75b 1160 chrX 19472126 19472152 chrX 19472693 19472713 jockey 4 564 5.5 1.5 3.5 0.9 587 chrX 19472126 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472713 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-229_75b 1161 chrX 19500559 19500747 chrX 19500636 19500833 7 82 0.5 1.0 0.8 3.9 274 chrX 19500559 intron,intron CG14200 +,Pfrx + chrX 19500696 intron,intron CG14200 +,Pfrx + chrX 19500833 intron,intron CG14200 +,Pfrx + chrX_7_19500001 chrX_19500001 RAL-229_75b 1162 chrX 19710080 19710103 chrX 19711866 19711874 S-element 4 1782 0.0 2.5 1.2 1.8 1794 chrX 19710080 intron meso18E - chrX 19710977 intron meso18E - chrX 19711874 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-229_75b 1163 chrX 19881468 19881483 chrX 19881548 19881563 5 80 2.0 0.5 1.2 2.3 95 chrX 19881468 intron Hers + chrX 19881516 intron Hers + chrX 19881563 intron Hers + chrX_5_19880001 chrX_19880001 RAL-229_75b 1164 chrX 20041531 20041555 chrX 20041611 20041635 5 79 1.5 0.5 1.0 2.5 104 chrX 20041531 intron Dop2R - chrX 20041583 intron Dop2R - chrX 20041635 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-229_75b 1165 chrX 20065818 20065832 chrX 20065888 20065911 4 76 1.0 1.5 1.2 1.8 93 chrX 20065818 intergenic not near genes chrX 20065864 intergenic not near genes chrX 20065911 intergenic not near genes chrX_4_20065001 chrX_20065001 RAL-229_75b 1166 chrX 20374108 20374128 chrX 20374178 20374203 4 72 1.0 4.0 2.5 1.1 95 chrX 20374108 intergenic not near genes chrX 20374156 intergenic not near genes chrX 20374203 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-229_75b 1167 chrX 20377327 20377348 chrX 20378794 20378815 hobo 6 1466 4.0 2.5 3.2 1.4 1488 chrX 20377327 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-229_75b 1168 chrX 20836731 20836752 chrX 20844330 20844353 roo 6 7600 1.0 1.5 1.2 2.7 7622 chrX 20836731 intron shakB - chrX 20840542 intron shakB - chrX 20844353 intron shakB - chrX_6_20840001 chrX_20840001 RAL-229_75b 1169 chrX 21086136 21086161 chrX 21087165 21087186 jockey 4 1024 1.5 3.5 2.5 1.1 1050 chrX 21086136 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087186 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-229_75b 1170 chrX 21474411 21474434 chrX 21474777 21474779 1731 7 362 2.0 3.5 2.8 1.8 368 chrX 21474411 intergenic not near genes chrX 21474595 intergenic not near genes chrX 21474779 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-229_75b 1171 chrX 21500563 21500589 chrX 21500762 21500790 5 197 0.0 0.0 0.0 5.0 227 chrX 21500563 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500790 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-229_75b 1172 chrX 21565428 21565444 chrX 21565506 21565522 4 74 1.0 2.0 1.5 1.6 94 chrX 21565428 intergenic not near genes chrX 21565475 intergenic not near genes chrX 21565522 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-229_75b 1173 chrX 22665802 22665825 chrX 22665881 22665904 6 79 1.5 0.5 1.0 3.0 102 chrX 22665802 intron CR44997 + chrX 22665853 intron CR44997 + chrX 22665904 intron CR44997 + chrX_6_22665001 chrX_22665001 RAL-229_75b 1174 chrX 22824229 22824427 chrX 22824355 22824560 5 127 0.0 1.0 0.5 3.3 331 chrX 22824229 intergenic fog - chrX 22824394 3` UTR fog - chrX 22824560 3` UTR fog - chrX_5_22820001 chrX_22820001 RAL-229_75b 1175 chrX 22992393 22992420 chrX 22992524 22992551 5 129 1.5 1.0 1.2 2.3 158 chrX 22992393 intron,intron stnA -,stnB - chrX 22992472 intron,intron stnA -,stnB - chrX 22992551 intron,intron stnA -,stnB - chrX_5_22990001 chrX_22990001 RAL-229_75b 1176 chrX 22996318 22996331 chrX 23003550 23003563 roo 4 7232 1.5 1.5 1.5 1.6 7245 chrX 22996318 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003563 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-229_75b