SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47487 chr2L 52566 52592 jockey 9 5103 5.0 2.0 3.5 2.0 5131 chr2L 47461 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_9_50001 chr2L_50001 RAL-228 2 chr2L 89716 89742 chr2L 89793 89815 7 75 5.5 3.5 4.5 1.3 99 chr2L 89716 intergenic not near genes chr2L 89766 intergenic not near genes chr2L 89815 intergenic not near genes chr2L_7_85001 chr2L_85001 RAL-228 3 chr2L 179460 179484 chr2L 179543 179567 5 83 1.0 1.0 1.0 2.5 107 chr2L 179460 intron spen + chr2L 179514 intron spen + chr2L 179567 intron spen + chr2L_5_175001 chr2L_175001 RAL-228 4 chr2L 297685 297710 chr2L 297785 297809 8 98 0.0 2.0 1.0 4.0 124 chr2L 297685 intergenic Pi3K21B +,Hop + chr2L 297747 intergenic Pi3K21B +,Hop + chr2L 297809 intergenic Pi3K21B +,Hop + chr2L_8_295001 chr2L_295001 RAL-228 5 chr2L 314136 314151 chr2L 314213 314225 4 76 3.0 2.0 2.5 1.1 89 chr2L 314136 intron Plc21C + chr2L 314180 intron Plc21C + chr2L 314225 intron Plc21C + chr2L_4_310001 chr2L_310001 RAL-228 6 chr2L 323461 323485 chr2L 323533 323551 6 75 1.0 2.5 1.8 2.1 90 chr2L 323461 intron Plc21C + chr2L 323506 intron Plc21C + chr2L 323551 intron Plc21C + chr2L_6_320001 chr2L_320001 RAL-228 7 chr2L 347889 347909 chr2L 355389 355408 blood 7 7500 1.0 3.0 2.0 2.3 7519 chr2L 347889 3` UTR Plc21C + chr2L 351648 intron Plc21C + chr2L 355408 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-228 8 chr2L 597172 597177 chr2L 597292 597315 4 125 11.5 15.5 13.5 0.3 143 chr2L 597172 intergenic not near genes chr2L 597244 intergenic not near genes chr2L 597315 intergenic not near genes chr2L_4_595001 chr2L_595001 RAL-228 9 chr2L 630307 630321 chr2L 630399 630413 5 92 0.0 0.5 0.2 4.2 106 chr2L 630307 intergenic not near genes chr2L 630360 intergenic not near genes chr2L 630413 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-228 10 chr2L 741256 741280 chr2L 744794 744818 5 3538 26.5 7.0 16.8 0.3 3562 chr2L 741256 intron Eaat2 - chr2L 743037 intron Eaat2 - chr2L 744818 intergenic Eaat2 - chr2L_5_740001 chr2L_740001 RAL-228 11 chr2L 877841 877866 chr2L 877922 877941 11 79 4.0 2.5 3.2 2.6 100 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_11_875001 chr2L_875001 RAL-228 12 chr2L 931638 931659 chr2L 931717 931738 5 79 0.5 2.5 1.5 2.0 100 chr2L 931638 intron CG4341 + chr2L 931688 intron CG4341 + chr2L 931738 intron CG4341 + chr2L_5_930001 chr2L_930001 RAL-228 13 chr2L 971922 971931 chr2L 972013 972022 4 90 3.5 4.5 4.0 0.8 100 chr2L 971922 intergenic not near genes chr2L 971972 intergenic not near genes chr2L 972022 intergenic not near genes chr2L_4_970001 chr2L_970001 RAL-228 14 chr2L 1028848 1028873 chr2L 1028946 1028970 4 92 3.0 1.0 2.0 1.3 122 chr2L 1028848 intron IA-2 - chr2L 1028909 intron IA-2 - chr2L 1028970 intron IA-2 - chr2L_4_1025001 chr2L_1025001 RAL-228 15 chr2L 1035559 1035592 chr2L 1035636 1035669 6 77 0.5 4.0 2.2 1.9 110 chr2L 1035559 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_6_1035001 chr2L_1035001 RAL-228 16 chr2L 1126671 1126702 chr2L 1126747 1126778 6 74 2.5 0.5 1.5 2.4 107 chr2L 1126671 intron Pino - chr2L 1126724 intron Pino - chr2L 1126778 intron Pino - chr2L_6_1125001 chr2L_1125001 RAL-228 17 chr2L 1156858 1156871 chr2L 1156963 1156975 5 105 3.0 2.5 2.8 1.3 117 chr2L 1156858 intron capt - chr2L 1156916 intron capt - chr2L 1156975 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-228 18 chr2L 1220129 1220158 chr2L 1227595 1227624 blood 6 7466 2.5 1.0 1.8 2.1 7495 chr2L 1220129 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227624 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-228 19 chr2L 1320281 1320307 chr2L 1320359 1320382 9 76 1.5 3.5 2.5 2.6 101 chr2L 1320281 intergenic not near genes chr2L 1320332 intergenic not near genes chr2L 1320382 intergenic not near genes chr2L_9_1320001 chr2L_1320001 RAL-228 20 chr2L 1570688 1570719 chr2L 1573560 1573589 F-element 7 2870 1.5 1.0 1.2 3.2 2901 chr2L 1570688 intron haf + chr2L 1572138 intron haf + chr2L 1573589 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-228 21 chr2L 1590956 1590991 chr2L 1591031 1591067 9 76 2.0 3.0 2.5 2.6 111 chr2L 1590956 intron haf + chr2L 1591012 intron haf + chr2L 1591067 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-228 22 chr2L 1678997 1679007 chr2L 1686462 1686470 blood 4 7464 0.0 6.5 3.2 1.0 7473 chr2L 1678997 intron chinmo + chr2L 1682734 intron chinmo + chr2L 1686470 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-228 23 chr2L 1711356 1711380 chr2L 1711679 1711704 mdg3 9 323 2.5 1.5 2.0 3.0 348 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711530 3` UTR frtz - chr2L 1711704 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-228 24 chr2L 1995678 1995696 chr2L 1995771 1995772 4 88 3.0 2.0 2.5 1.1 94 chr2L 1995678 intergenic not near genes chr2L 1995725 intergenic not near genes chr2L 1995772 intergenic not near genes chr2L_4_1995001 chr2L_1995001 RAL-228 25 chr2L 2049230 2049238 chr2L 2049314 2049321 4 84 0.0 2.5 1.2 1.8 91 chr2L 2049230 intergenic not near genes chr2L 2049276 intergenic not near genes chr2L 2049321 intergenic not near genes chr2L_4_2045001 chr2L_2045001 RAL-228 26 chr2L 2075513 2075542 chr2L 2075598 2075628 8 86 3.0 2.5 2.8 2.1 115 chr2L 2075513 intron dpr3 - chr2L 2075570 intron dpr3 - chr2L 2075628 intron dpr3 - chr2L_8_2075001 chr2L_2075001 RAL-228 27 chr2L 2100380 2100407 chr2L 2109531 2109558 roo 6 9148 3.5 2.0 2.8 1.6 9178 chr2L 2100380 intron dpr3 - chr2L 2104969 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-228 28 chr2L 2294039 2294070 chr2L 2299244 2299274 copia 4 5205 1.0 3.0 2.0 1.3 5235 chr2L 2294039 intergenic not near genes chr2L 2296656 intergenic not near genes chr2L 2299274 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-228 29 chr2L 2299337 2299364 chr2L 2299414 2299442 6 78 1.0 1.0 1.0 3.0 105 chr2L 2299337 intergenic not near genes chr2L 2299390 intergenic not near genes chr2L 2299442 intergenic not near genes chr2L_6_2295001 chr2L_2295001 RAL-228 30 chr2L 2328093 2328119 chr2L 2328210 2328235 6 117 0.5 1.0 0.8 3.3 142 chr2L 2328093 intron,intron CG9967 -,eys + chr2L 2328164 intron,intron CG9967 -,eys + chr2L 2328235 intron,intron CG9967 -,eys + chr2L_6_2325001 chr2L_2325001 RAL-228 31 chr2L 2331302 2331331 chr2L 2331427 2331456 8 123 1.5 2.0 1.8 2.9 154 chr2L 2331302 intron,intron CG9967 -,eys + chr2L 2331379 intron,intron CG9967 -,eys + chr2L 2331456 intron,intron CG9967 -,eys + chr2L_8_2330001 chr2L_2330001 RAL-228 32 chr2L 2334198 2334217 chr2L 2334343 2334369 4 150 1.5 2.5 2.0 1.3 171 chr2L 2334198 intron,intron CG9967 -,eys + chr2L 2334284 intron,intron CG9967 -,eys + chr2L 2334369 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-228 33 chr2L 2581195 2581211 chr2L 2581433 2581449 5 238 0.0 3.5 1.8 1.8 254 chr2L 2581195 3` UTR Arpc5 + chr2L 2581322 3` UTR,3` UTR Arpc5 +,Drp1 - chr2L 2581449 3` UTR Drp1 - chr2L_5_2580001 chr2L_2580001 RAL-228 34 chr2L 2698865 2698894 chr2L 2698952 2698979 6 86 0.5 1.5 1.0 3.0 114 chr2L 2698865 intron CG31690 + chr2L 2698922 intron CG31690 + chr2L 2698979 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-228 35 chr2L 2807473 2807509 chr2L 2807554 2807590 12 80 2.0 2.5 2.2 3.8 117 chr2L 2807473 intron daw + chr2L 2807532 intron daw + chr2L 2807590 intron daw + chr2L_12_2805001 chr2L_2805001 RAL-228 36 chr2L 2937419 2937449 chr2L 2937496 2937526 4 77 0.0 1.5 0.8 2.2 107 chr2L 2937419 intron lilli + chr2L 2937472 intron lilli + chr2L 2937526 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-228 37 chr2L 3073030 3073059 chr2L 3078233 3078262 copia 8 5203 5.5 2.5 4.0 1.6 5232 chr2L 3073030 intron toc - chr2L 3075646 intron toc - chr2L 3078262 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-228 38 chr2L 3108871 3108887 chr2L 3108947 3108964 4 76 2.0 3.0 2.5 1.1 93 chr2L 3108871 intron toc - chr2L 3108918 intron toc - chr2L 3108964 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-228 39 chr2L 3113413 3113445 chr2L 3113508 3113540 4 95 0.0 1.0 0.5 2.7 127 chr2L 3113413 intron toc - chr2L 3113476 intron toc - chr2L 3113540 intron toc - chr2L_4_3110001 chr2L_3110001 RAL-228 40 chr2L 3192209 3192241 chr2L 3192319 3192352 8 107 0.5 2.5 1.5 3.2 143 chr2L 3192209 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-228 41 chr2L 3447655 3447688 chr2L 3447750 3447783 14 94 2.0 3.5 2.8 3.7 128 chr2L 3447655 intergenic CG2772 + chr2L 3447719 intergenic CG2772 + chr2L 3447783 intergenic CG2772 + chr2L_14_3445001 chr2L_3445001 RAL-228 42 chr2L 3508356 3508370 chr2L 3508434 3508448 4 78 0.0 1.5 0.8 2.2 92 chr2L 3508356 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508448 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-228 43 chr2L 3591837 3591875 chr2L 3591913 3591933 8 66 3.5 2.5 3.0 2.0 96 chr2L 3591837 intergenic not near genes chr2L 3591885 intergenic not near genes chr2L 3591933 intergenic not near genes chr2L_8_3590001 chr2L_3590001 RAL-228 44 chr2L 3632361 3632389 chr2L 3632483 3632512 5 123 1.0 3.5 2.2 1.6 151 chr2L 3632361 intron for - chr2L 3632436 intron for - chr2L 3632512 intron for - chr2L_5_3630001 chr2L_3630001 RAL-228 45 chr2L 3663310 3663334 chr2L 3663389 3663413 5 78 1.5 2.0 1.8 1.8 103 chr2L 3663310 intron CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663413 intron CG34340 + chr2L_5_3660001 chr2L_3660001 RAL-228 46 chr2L 3887305 3887337 chr2L 3887385 3887417 12 75 0.5 2.5 1.5 4.8 112 chr2L 3887305 exon capu - chr2L 3887361 exon capu - chr2L 3887417 exon capu - chr2L_12_3885001 chr2L_3885001 RAL-228 47 chr2L 3891892 3891917 chr2L 3891977 3892001 6 85 1.0 2.5 1.8 2.1 109 chr2L 3891892 intron capu - chr2L 3891946 intron capu - chr2L 3892001 intron capu - chr2L_6_3890001 chr2L_3890001 RAL-228 48 chr2L 3995728 3995755 chr2L 3995810 3995830 8 81 1.5 1.5 1.5 3.2 102 chr2L 3995728 intergenic not near genes chr2L 3995779 intergenic not near genes chr2L 3995830 intergenic not near genes chr2L_8_3995001 chr2L_3995001 RAL-228 49 chr2L 4008680 4008705 chr2L 4008776 4008801 6 96 4.0 3.5 3.8 1.2 121 chr2L 4008680 5` UTR CG43774 + chr2L 4008740 exon CG43774 + chr2L 4008801 exon CG43774 + chr2L_6_4005001 chr2L_4005001 RAL-228 50 chr2L 4150634 4150653 chr2L 4150712 4150733 8 79 0.0 3.0 1.5 3.2 99 chr2L 4150634 exon CG2955 + chr2L 4150684 exon CG2955 + chr2L 4150733 exon CG2955 + chr2L_8_4150001 chr2L_4150001 RAL-228 51 chr2L 4160502 4160536 chr2L 4160912 4160947 5 411 2.5 3.5 3.0 1.2 445 chr2L 4160502 intergenic not near genes chr2L 4160724 intergenic not near genes chr2L 4160947 intergenic not near genes chr2L_5_4160001 chr2L_4160001 RAL-228 52 chr2L 4240980 4241008 chr2L 4241162 4241190 6 182 0.5 1.5 1.0 3.0 210 chr2L 4240980 intergenic CR44058 +,CR45720 - chr2L 4241085 5` UTR CR44058 + chr2L 4241190 5` UTR CR44058 + chr2L_6_4240001 chr2L_4240001 RAL-228 53 chr2L 4351481 4351496 chr2L 4351557 4351561 4 73 2.0 2.5 2.2 1.2 80 chr2L 4351481 intergenic CR44700 + chr2L 4351521 intergenic CR44700 + chr2L 4351561 intergenic CR44700 + chr2L_4_4350001 chr2L_4350001 RAL-228 54 chr2L 4601703 4601734 chr2L 4609144 4609175 mdg1 15 7441 1.5 2.0 1.8 5.4 7472 chr2L 4601703 intron dp - chr2L 4605439 intron dp - chr2L 4609175 intron dp - chr2L_15_4605001 chr2L_4605001 RAL-228 55 chr2L 4681288 4681321 chr2L 4681552 4681585 8 264 1.5 2.5 2.0 2.7 297 chr2L 4681288 intergenic not near genes chr2L 4681436 intergenic not near genes chr2L 4681585 intergenic not near genes chr2L_8_4680001 chr2L_4680001 RAL-228 56 chr2L 4814520 4814546 chr2L 4814663 4814688 6 143 0.5 2.5 1.5 2.4 168 chr2L 4814520 intron CG15629 + chr2L 4814604 intron CG15629 + chr2L 4814688 intron CG15629 + chr2L_6_4810001 chr2L_4810001 RAL-228 57 chr2L 4862288 4862302 chr2L 4862364 4862378 4 76 3.5 5.5 4.5 0.7 90 chr2L 4862288 intron pog + chr2L 4862333 intron pog + chr2L 4862378 intron pog + chr2L_4_4860001 chr2L_4860001 RAL-228 58 chr2L 5455681 5455713 chr2L 5455760 5455792 9 77 3.0 2.0 2.5 2.6 111 chr2L 5455681 intergenic not near genes chr2L 5455736 intergenic not near genes chr2L 5455792 intergenic not near genes chr2L_9_5455001 chr2L_5455001 RAL-228 59 chr2L 5475160 5475164 chr2L 5475265 5475268 4 105 1.5 1.0 1.2 1.8 108 chr2L 5475160 intergenic not near genes chr2L 5475214 intergenic not near genes chr2L 5475268 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-228 60 chr2L 5635941 5635970 chr2L 5636018 5636046 9 77 4.0 0.5 2.2 2.8 105 chr2L 5635941 intron CG31646 - chr2L 5635994 intron CG31646 - chr2L 5636046 intron CG31646 - chr2L_9_5635001 chr2L_5635001 RAL-228 61 chr2L 5993346 5993356 chr2L 5993437 5993447 7 91 4.0 5.5 4.8 1.2 101 chr2L 5993346 intron lid - chr2L 5993396 intron lid - chr2L 5993447 intron lid - chr2L_7_5990001 chr2L_5990001 RAL-228 62 chr2L 6070901 6070925 chr2L 6070990 6071013 8 86 0.0 2.0 1.0 4.0 112 chr2L 6070901 intergenic Kr-h2 +,CG9154 - chr2L 6070957 intergenic Kr-h2 +,CG9154 - chr2L 6071013 5` UTR Kr-h2 + chr2L_8_6070001 chr2L_6070001 RAL-228 63 chr2L 6172898 6172915 chr2L 6173159 6173175 4 259 2.0 2.0 2.0 1.3 277 chr2L 6172898 intergenic not near genes chr2L 6173036 intergenic not near genes chr2L 6173175 intergenic not near genes chr2L_4_6170001 chr2L_6170001 RAL-228 64 chr2L 6185440 6185467 chr2L 6185518 6185545 4 74 4.5 1.5 3.0 1.0 105 chr2L 6185440 intron CG34380 + chr2L 6185492 intron CG34380 + chr2L 6185545 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-228 65 chr2L 6209616 6209631 chr2L 6209692 6209707 4 76 1.5 1.5 1.5 1.6 91 chr2L 6209616 3` UTR CG34380 + chr2L 6209662 3` UTR CG34380 + chr2L 6209707 3` UTR CG34380 + chr2L_4_6205001 chr2L_6205001 RAL-228 66 chr2L 6343667 6343667 chr2L 6343982 6343986 4 316 15.0 16.5 15.8 0.2 319 chr2L 6343667 intron Cpr + chr2L 6343826 intron Cpr + chr2L 6343986 intron Cpr + chr2L_4_6340001 chr2L_6340001 RAL-228 67 chr2L 6367632 6367655 chr2L 6367745 6367768 4 113 0.5 2.0 1.2 1.8 136 chr2L 6367632 intergenic CG9505 + chr2L 6367700 intergenic CG9505 + chr2L 6367768 intergenic CG9505 + chr2L_4_6365001 chr2L_6365001 RAL-228 68 chr2L 6426853 6426888 chr2L 6445113 6445148 roo 7 18260 0.5 3.0 1.8 2.5 18295 chr2L 6426853 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-228 69 chr2L 6544377 6544390 chr2L 6544469 6544482 5 92 1.0 1.0 1.0 2.5 105 chr2L 6544377 intron eya - chr2L 6544430 intron eya - chr2L 6544482 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-228 70 chr2L 6626895 6626918 chr2L 6626980 6627002 7 85 6.0 2.5 4.2 1.3 107 chr2L 6626895 intron Oatp26F - chr2L 6626948 intron Oatp26F - chr2L 6627002 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-228 71 chr2L 7358305 7358322 chr2L 7358384 7358401 4 77 0.5 2.0 1.2 1.8 96 chr2L 7358305 intergenic not near genes chr2L 7358353 intergenic not near genes chr2L 7358401 intergenic not near genes chr2L_4_7355001 chr2L_7355001 RAL-228 72 chr2L 7432238 7432255 chr2L 7432320 7432336 5 82 0.5 2.0 1.2 2.3 98 chr2L 7432238 intron CG5958 - chr2L 7432287 intron CG5958 - chr2L 7432336 intron CG5958 - chr2L_5_7430001 chr2L_7430001 RAL-228 73 chr2L 7493673 7493703 chr2L 7493884 7493914 7 210 3.5 2.0 2.8 1.8 241 chr2L 7493673 intron Ziz - chr2L 7493794 intron Ziz - chr2L 7493914 intron Ziz - chr2L_7_7490001 chr2L_7490001 RAL-228 74 chr2L 7691807 7691830 chr2L 7691890 7691913 8 83 5.5 2.5 4.0 1.6 106 chr2L 7691807 exon CG7025 - chr2L 7691860 intron CG7025 - chr2L 7691913 exon CG7025 - chr2L_8_7690001 chr2L_7690001 RAL-228 75 chr2L 7766628 7766647 chr2L 7766704 7766718 5 72 5.5 0.0 2.8 1.3 90 chr2L 7766628 intergenic not near genes chr2L 7766673 intergenic not near genes chr2L 7766718 intergenic not near genes chr2L_5_7765001 chr2L_7765001 RAL-228 76 chr2L 7922747 7922767 chr2L 7922828 7922848 4 81 3.5 2.5 3.0 1.0 101 chr2L 7922747 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922848 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-228 77 chr2L 7959047 7959061 chr2L 7960458 7960472 pogo 4 1411 2.5 0.0 1.2 1.8 1425 chr2L 7959047 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960472 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-228 78 chr2L 8089686 8089714 chr2L 8105694 8105722 9 16008 7.0 9.0 8.0 1.0 16036 chr2L 8089686 exon Bsg + chr2L 8097704 intron Bsg + chr2L 8105722 exon Bsg + chr2L_9_8095001 chr2L_8095001 RAL-228 79 chr2L 8105775 8105788 chr2L 8106858 8106871 4 1083 12.0 17.0 14.5 0.3 1096 chr2L 8105775 exon Bsg + chr2L 8106323 intron Bsg + chr2L 8106871 exon Bsg + chr2L_4_8105001 chr2L_8105001 RAL-228 80 chr2L 8106949 8107149 chr2L 8107067 8107266 19 116 17.0 14.0 15.5 1.2 317 chr2L 8106949 exon Bsg + chr2L 8107108 exon Bsg + chr2L 8107266 exon Bsg + chr2L_19_8105001 chr2L_8105001 RAL-228 81 chr2L 8107389 8107420 chr2L 8107751 8107781 9 357 17.5 10.5 14.0 0.6 392 chr2L 8107389 exon Bsg + chr2L 8107585 intron Bsg + chr2L 8107781 exon Bsg + chr2L_9_8105001 chr2L_8105001 RAL-228 82 chr2L 8244733 8244748 chr2L 8244855 8244870 8 122 1.0 1.5 1.2 3.6 137 chr2L 8244733 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244870 intron CG8086 - chr2L_8_8240001 chr2L_8240001 RAL-228 83 chr2L 8288679 8288704 chr2L 8288775 8288800 5 96 0.5 4.0 2.2 1.6 121 chr2L 8288679 intron Btk29A - chr2L 8288740 intron Btk29A - chr2L 8288800 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-228 84 chr2L 8417949 8417974 chr2L 8418042 8418067 8 93 2.0 1.5 1.8 2.9 118 chr2L 8417949 intron Akap200 + chr2L 8418008 intron Akap200 + chr2L 8418067 intron Akap200 + chr2L_8_8415001 chr2L_8415001 RAL-228 85 chr2L 8666534 8666556 chr2L 8666617 8666639 8 81 2.5 0.5 1.5 3.2 105 chr2L 8666534 3` UTR Sema-1a + chr2L 8666586 3` UTR Sema-1a + chr2L 8666639 3` UTR Sema-1a + chr2L_8_8665001 chr2L_8665001 RAL-228 86 chr2L 8676185 8676216 chr2L 8676382 8676413 8 196 5.0 5.5 5.2 1.3 228 chr2L 8676185 exon Glt + chr2L 8676299 exon Glt + chr2L 8676413 exon Glt + chr2L_8_8675001 chr2L_8675001 RAL-228 87 chr2L 8719205 8719232 chr2L 8719281 8719308 10 76 1.5 1.0 1.2 4.5 103 chr2L 8719205 intron raw - chr2L 8719256 intron raw - chr2L 8719308 intron raw - chr2L_10_8715001 chr2L_8715001 RAL-228 88 chr2L 8723116 8723146 chr2L 8731493 8731523 Tirant 6 8377 1.0 1.0 1.0 3.0 8407 chr2L 8723116 intron raw - chr2L 8727320 intron raw - chr2L 8731523 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-228 89 chr2L 8784711 8784721 chr2L 8784822 8784831 4 111 1.5 0.5 1.0 2.0 120 chr2L 8784711 intergenic not near genes chr2L 8784771 intergenic not near genes chr2L 8784831 intergenic not near genes chr2L_4_8780001 chr2L_8780001 RAL-228 90 chr2L 8815402 8815423 chr2L 8815760 8815789 4 364 3.0 2.0 2.5 1.1 387 chr2L 8815402 intergenic not near genes chr2L 8815596 intergenic not near genes chr2L 8815789 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-228 91 chr2L 9080712 9080729 chr2L 9080810 9080826 5 97 1.5 5.0 3.2 1.2 114 chr2L 9080712 intergenic not near genes chr2L 9080769 intergenic not near genes chr2L 9080826 intergenic not near genes chr2L_5_9080001 chr2L_9080001 RAL-228 92 chr2L 9084336 9084340 chr2L 16217660 16217660 17 7133322 14.0 15.0 14.5 1.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-228 93 chr2L 9270738 9270763 chr2L 9270833 9270845 5 91 4.0 2.0 3.0 1.2 107 chr2L 9270738 intron Ggamma30A + chr2L 9270792 intron Ggamma30A + chr2L 9270845 intron Ggamma30A + chr2L_5_9270001 chr2L_9270001 RAL-228 94 chr2L 9274199 9274223 chr2L 9274281 9274304 6 76 2.5 2.5 2.5 1.7 105 chr2L 9274199 intron Ggamma30A + chr2L 9274252 intron Ggamma30A + chr2L 9274304 intron Ggamma30A + chr2L_6_9270001 chr2L_9270001 RAL-228 95 chr2L 9297377 9297400 chr2L 9297454 9297477 10 77 1.5 1.5 1.5 4.0 100 chr2L 9297377 3` UTR Ggamma30A + chr2L 9297427 3` UTR Ggamma30A + chr2L 9297477 3` UTR Ggamma30A + chr2L_10_9295001 chr2L_9295001 RAL-228 96 chr2L 9410572 9410579 chr2L 9410628 9410656 5 73 0.0 1.0 0.5 3.3 84 chr2L 9410572 intron Shawl - chr2L 9410614 intron Shawl - chr2L 9410656 intron Shawl - chr2L_5_9410001 chr2L_9410001 RAL-228 97 chr2L 9456937 9456962 chr2L 9457018 9457043 8 80 0.0 3.5 1.8 2.9 106 chr2L 9456937 intron numb + chr2L 9456990 intron numb + chr2L 9457043 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-228 98 chr2L 9490535 9490552 chr2L 9490607 9490632 4 78 0.0 4.0 2.0 1.3 97 chr2L 9490535 intergenic not near genes chr2L 9490584 intergenic not near genes chr2L 9490632 intergenic not near genes chr2L_4_9490001 chr2L_9490001 RAL-228 99 chr2L 9509323 9509342 chr2L 9509400 9509424 4 81 0.5 0.0 0.2 3.3 101 chr2L 9509323 intron CG33298 + chr2L 9509374 intron CG33298 + chr2L 9509424 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-228 100 chr2L 9767917 9767939 chr2L 9767990 9768018 9 78 0.0 4.5 2.2 2.8 101 chr2L 9767917 intron,exon ppk18 -,CG4017 + chr2L 9767968 intron,exon ppk18 -,CG4017 + chr2L 9768018 intron,exon ppk18 -,CG4017 + chr2L_9_9765001 chr2L_9765001 RAL-228 101 chr2L 9892509 9892524 chr2L 9892585 9892600 5 76 2.0 1.0 1.5 2.0 91 chr2L 9892509 intron mtDNA-helicase - chr2L 9892554 intron mtDNA-helicase - chr2L 9892600 intron mtDNA-helicase - chr2L_5_9890001 chr2L_9890001 RAL-228 102 chr2L 9973726 9973759 chr2L 9980845 9980878 HMS-Beagle 10 7118 2.5 1.5 2.0 3.3 7152 chr2L 9973726 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-228 103 chr2L 10051729 10051750 chr2L 10051814 10051835 9 83 5.5 4.5 5.0 1.5 106 chr2L 10051729 5` UTR CR44874 + chr2L 10051782 5` UTR CR44874 + chr2L 10051835 5` UTR CR44874 + chr2L_9_10050001 chr2L_10050001 RAL-228 104 chr2L 10156322 10156350 chr2L 10163792 10163820 blood 9 7470 1.0 1.0 1.0 4.5 7498 chr2L 10156322 intron,3` UTR CG44153 -,CG4839 + chr2L 10160071 intron CG44153 - chr2L 10163820 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-228 105 chr2L 10474386 10474400 chr2L 10474467 10474481 4 81 3.5 0.5 2.0 1.3 95 chr2L 10474386 intergenic RluA-1 - chr2L 10474434 intergenic RluA-1 - chr2L 10474481 intergenic RluA-1 - chr2L_4_10470001 chr2L_10470001 RAL-228 106 chr2L 10479038 10479058 chr2L 10479197 10479218 4 160 3.5 2.5 3.0 1.0 180 chr2L 10479038 intron RluA-2 + chr2L 10479128 intron RluA-2 + chr2L 10479218 intron RluA-2 + chr2L_4_10475001 chr2L_10475001 RAL-228 107 chr2L 10586507 10586538 chr2L 10586589 10586620 5 81 2.5 1.5 2.0 1.7 113 chr2L 10586507 intron Trim9 + chr2L 10586564 intron Trim9 + chr2L 10586620 intron Trim9 + chr2L_5_10585001 chr2L_10585001 RAL-228 108 chr2L 10609456 10609473 chr2L 10609646 10609658 4 188 1.5 3.5 2.5 1.1 202 chr2L 10609456 intron Trim9 + chr2L 10609557 intron Trim9 + chr2L 10609658 intron Trim9 + chr2L_4_10605001 chr2L_10605001 RAL-228 109 chr2L 10640644 10640665 chr2L 10640733 10640753 12 89 5.5 1.0 3.2 2.9 109 chr2L 10640644 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640753 exon CG31872 + chr2L_12_10640001 chr2L_10640001 RAL-228 110 chr2L 10705464 10705477 chr2L 10705537 10705560 6 81 4.5 2.5 3.5 1.3 96 chr2L 10705464 exon Lip2 - chr2L 10705512 intron Lip2 - chr2L 10705560 intron Lip2 - chr2L_6_10705001 chr2L_10705001 RAL-228 111 chr2L 10850150 10850164 chr2L 10850245 10850259 7 94 6.0 2.5 4.2 1.3 109 chr2L 10850150 5` UTR,5` UTR porin -,CG43129 + chr2L 10850204 5` UTR,5` UTR porin -,CG43129 + chr2L 10850259 5` UTR,5` UTR porin -,CG43129 + chr2L_7_10850001 chr2L_10850001 RAL-228 112 chr2L 10862857 10862867 chr2L 10864471 10864481 Rt1c 5 1614 3.0 6.0 4.5 0.9 1624 chr2L 10862857 3` UTR CR43807 - chr2L 10863669 intron CR43807 - chr2L 10864481 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-228 113 chr2L 10862868 10862876 chr2L 10864462 10864490 Rt1c 5 1609 2.5 4.0 3.2 1.2 1622 chr2L 10862868 3` UTR CR43807 - chr2L 10863679 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_5_10860001 chr2L_10860001 RAL-228 114 chr2L 10912987 10913000 chr2L 10913065 10913079 4 79 6.0 5.0 5.5 0.6 92 chr2L 10912987 intergenic not near genes chr2L 10913033 intergenic not near genes chr2L 10913079 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-228 115 chr2L 10946949 10946976 chr2L 10956164 10956191 roo 7 9214 1.5 3.0 2.2 2.2 9242 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-228 116 chr2L 10956486 10956511 chr2L 10956560 10956593 12 81 0.5 0.0 0.2 10.0 107 chr2L 10956486 intron dpr2 - chr2L 10956540 intron dpr2 - chr2L 10956593 intron dpr2 - chr2L_12_10955001 chr2L_10955001 RAL-228 117 chr2L 11224070 11224087 chr2L 11224177 11224197 6 110 2.5 0.5 1.5 2.4 127 chr2L 11224070 intron ab + chr2L 11224134 intron ab + chr2L 11224197 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-228 118 chr2L 11249311 11249339 chr2L 11249606 11249631 9 295 1.5 6.0 3.8 1.9 320 chr2L 11249311 intron ab + chr2L 11249471 intron ab + chr2L 11249631 intron ab + chr2L_9_11245001 chr2L_11245001 RAL-228 119 chr2L 11380611 11380643 chr2L 11380688 11380720 6 76 0.5 1.0 0.8 3.3 109 chr2L 11380611 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380720 intergenic not near genes chr2L_6_11380001 chr2L_11380001 RAL-228 120 chr2L 11418661 11418686 chr2L 11418740 11418765 4 79 1.5 2.5 2.0 1.3 104 chr2L 11418661 intergenic not near genes chr2L 11418713 intergenic not near genes chr2L 11418765 intergenic not near genes chr2L_4_11415001 chr2L_11415001 RAL-228 121 chr2L 11451412 11451448 chr2L 11451501 11451537 6 86 2.0 1.5 1.8 2.1 125 chr2L 11451412 intergenic not near genes chr2L 11451474 intergenic not near genes chr2L 11451537 intergenic not near genes chr2L_6_11450001 chr2L_11450001 RAL-228 122 chr2L 11458946 11458976 chr2L 11459062 11459092 7 116 0.5 0.5 0.5 4.7 146 chr2L 11458946 intergenic not near genes chr2L 11459019 intergenic not near genes chr2L 11459092 intergenic not near genes chr2L_7_11455001 chr2L_11455001 RAL-228 123 chr2L 11517626 11517656 chr2L 11517708 11517735 6 82 2.0 3.5 2.8 1.6 109 chr2L 11517626 exon CG4970 + chr2L 11517680 exon CG4970 + chr2L 11517735 exon CG4970 + chr2L_6_11515001 chr2L_11515001 RAL-228 124 chr2L 11563649 11563666 chr2L 11568853 11568870 copia 4 5204 1.0 1.0 1.0 2.0 5221 chr2L 11563649 intergenic not near genes chr2L 11566260 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-228 125 chr2L 11614071 11614085 chr2L 11615550 11615563 hopper2 4 1481 0.5 1.0 0.8 2.2 1492 chr2L 11614071 intron kek2 + chr2L 11614817 intron kek2 + chr2L 11615563 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-228 126 chr2L 11713506 11713525 chr2L 11720974 11720993 blood 4 7468 3.0 0.5 1.8 1.4 7487 chr2L 11713506 intergenic not near genes chr2L 11717250 intergenic not near genes chr2L 11720993 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-228 127 chr2L 11770610 11770631 chr2L 11770697 11770718 5 87 2.0 3.0 2.5 1.4 108 chr2L 11770610 intergenic not near genes chr2L 11770664 intergenic not near genes chr2L 11770718 intergenic not near genes chr2L_5_11770001 chr2L_11770001 RAL-228 128 chr2L 12145955 12145971 chr2L 12146038 12146054 7 83 2.0 1.0 1.5 2.8 99 chr2L 12145955 intron CG31760 + chr2L 12146004 intron CG31760 + chr2L 12146054 intron CG31760 + chr2L_7_12145001 chr2L_12145001 RAL-228 129 chr2L 12234037 12234066 chr2L 12234132 12234160 6 95 2.5 0.5 1.5 2.4 123 chr2L 12234037 intron aret + chr2L 12234098 intron aret + chr2L 12234160 intron aret + chr2L_6_12230001 chr2L_12230001 RAL-228 130 chr2L 12272169 12272195 chr2L 12272245 12272271 4 76 1.0 0.0 0.5 2.7 102 chr2L 12272169 intron aret + chr2L 12272220 intron aret + chr2L 12272271 intron aret + chr2L_4_12270001 chr2L_12270001 RAL-228 131 chr2L 12387925 12387939 chr2L 12388028 12388036 4 100 5.0 3.5 4.2 0.8 111 chr2L 12387925 intron bru-2 + chr2L 12387980 intron bru-2 + chr2L 12388036 intron bru-2 + chr2L_4_12385001 chr2L_12385001 RAL-228 132 chr2L 12420977 12420983 chr2L 12421308 12421313 4 330 0.5 0.0 0.2 3.3 336 chr2L 12420977 intron vir-1 - chr2L 12421145 intron vir-1 - chr2L 12421313 intron vir-1 - chr2L_4_12420001 chr2L_12420001 RAL-228 133 chr2L 12479895 12479921 chr2L 12479987 12480014 6 93 0.0 0.0 0.0 6.0 119 chr2L 12479895 intron bun - chr2L 12479954 intron bun - chr2L 12480014 intron bun - chr2L_6_12475001 chr2L_12475001 RAL-228 134 chr2L 12521272 12521274 chr2L 12521486 12521489 5 215 3.0 5.5 4.2 1.0 217 chr2L 12521272 intron bun - chr2L 12521380 intron bun - chr2L 12521489 intron bun - chr2L_5_12520001 chr2L_12520001 RAL-228 135 chr2L 12529242 12529440 chr2L 12529375 12529516 7 100 0.0 0.0 0.0 7.0 274 chr2L 12529242 intron bun - chr2L 12529379 intron bun - chr2L 12529516 intron bun - chr2L_7_12525001 chr2L_12525001 RAL-228 136 chr2L 12647715 12647725 chr2L 12647796 12647804 7 81 1.5 3.5 2.5 2.0 89 chr2L 12647715 intergenic not near genes chr2L 12647760 intergenic not near genes chr2L 12647804 intergenic not near genes chr2L_7_12645001 chr2L_12645001 RAL-228 137 chr2L 12682873 12682906 chr2L 12682952 12682977 15 77 3.5 3.0 3.2 3.6 104 chr2L 12682873 intron pdm2 + chr2L 12682925 intron pdm2 + chr2L 12682977 intron pdm2 + chr2L_15_12680001 chr2L_12680001 RAL-228 138 chr2L 12739173 12739201 chr2L 12743954 12743982 Doc 7 4781 1.5 1.5 1.5 2.8 4809 chr2L 12739173 exon MRP + chr2L 12741578 intron MRP + chr2L 12743982 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-228 139 chr2L 12759206 12759239 chr2L 12759301 12759334 12 95 1.0 3.5 2.2 3.8 128 chr2L 12759206 intergenic not near genes chr2L 12759270 intergenic not near genes chr2L 12759334 intergenic not near genes chr2L_12_12755001 chr2L_12755001 RAL-228 140 chr2L 12861700 12861728 chr2L 12863163 12863195 hobo 8 1462 0.5 3.5 2.0 2.7 1495 chr2L 12861700 intergenic not near genes chr2L 12862448 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-228 141 chr2L 12905476 12905487 chr2L 12905560 12905571 5 84 1.0 0.5 0.8 2.8 95 chr2L 12905476 intergenic not near genes chr2L 12905524 intergenic not near genes chr2L 12905571 intergenic not near genes chr2L_5_12905001 chr2L_12905001 RAL-228 142 chr2L 12933857 12933865 chr2L 12941324 12941332 blood 5 7466 6.0 3.5 4.8 0.9 7475 chr2L 12933857 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941332 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-228 143 chr2L 12933868 12933881 chr2L 12941319 12941348 blood 5 7464 4.0 3.5 3.8 1.0 7480 chr2L 12933868 intergenic not near genes chr2L 12937608 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-228 144 chr2L 13266379 13266396 chr2L 13266467 13266484 6 86 0.5 1.0 0.8 3.3 105 chr2L 13266379 intron CG44085 + chr2L 13266432 intron CG44085 + chr2L 13266484 intron CG44085 + chr2L_6_13265001 chr2L_13265001 RAL-228 145 chr2L 13346037 13346073 chr2L 13346120 13346157 5 83 1.5 2.0 1.8 1.8 120 chr2L 13346037 intergenic not near genes chr2L 13346097 intergenic not near genes chr2L 13346157 intergenic not near genes chr2L_5_13345001 chr2L_13345001 RAL-228 146 chr2L 13405649 13405679 chr2L 13410445 13410476 Doc 15 4797 4.0 1.0 2.5 4.3 4827 chr2L 13405649 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_15_13405001 chr2L_13405001 RAL-228 147 chr2L 13481451 13481464 chr2L 13482058 13482071 jockey 5 607 3.5 5.0 4.2 1.0 620 chr2L 13481451 intron CG42784 + chr2L 13481761 intron CG42784 + chr2L 13482071 intron CG42784 + chr2L_5_13480001 chr2L_13480001 RAL-228 148 chr2L 13567466 13567495 chr2L 13567544 13567573 7 78 0.5 0.5 0.5 4.7 107 chr2L 13567466 intron kuz + chr2L 13567520 intron kuz + chr2L 13567573 intron kuz + chr2L_7_13565001 chr2L_13565001 RAL-228 149 chr2L 13693015 13693032 chr2L 13693091 13693108 6 74 1.5 2.0 1.8 2.1 93 chr2L 13693015 intron CG31814 - chr2L 13693062 intron CG31814 - chr2L 13693108 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-228 150 chr2L 13941795 13941821 chr2L 13941871 13941898 6 77 1.0 1.5 1.2 2.7 103 chr2L 13941795 intron Ance-3 + chr2L 13941846 intron Ance-3 + chr2L 13941898 intron Ance-3 + chr2L_6_13940001 chr2L_13940001 RAL-228 151 chr2L 14010406 14010426 chr2L 14010482 14010502 6 76 0.5 1.0 0.8 3.3 96 chr2L 14010406 intergenic not near genes chr2L 14010454 intergenic not near genes chr2L 14010502 intergenic not near genes chr2L_6_14010001 chr2L_14010001 RAL-228 152 chr2L 14056806 14056826 chr2L 14056892 14056911 6 85 2.0 1.5 1.8 2.1 105 chr2L 14056806 intron nAChRalpha5 + chr2L 14056858 intron nAChRalpha5 + chr2L 14056911 intron nAChRalpha5 + chr2L_6_14055001 chr2L_14055001 RAL-228 153 chr2L 14588390 14588412 chr2L 14588544 14588566 5 154 2.0 3.0 2.5 1.4 176 chr2L 14588390 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588566 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-228 154 chr2L 14590194 14590215 chr2L 14590274 14590294 5 78 2.5 0.5 1.5 2.0 100 chr2L 14590194 intergenic not near genes chr2L 14590244 intergenic not near genes chr2L 14590294 intergenic not near genes chr2L_5_14590001 chr2L_14590001 RAL-228 155 chr2L 14601990 14601999 chr2L 14602074 14602083 4 84 1.5 1.0 1.2 1.8 93 chr2L 14601990 exon osp - chr2L 14602036 intron osp - chr2L 14602083 intron osp - chr2L_4_14600001 chr2L_14600001 RAL-228 156 chr2L 14698575 14698589 chr2L 14698869 14698897 4 302 1.5 4.0 2.8 1.1 322 chr2L 14698575 intergenic not near genes chr2L 14698736 intergenic not near genes chr2L 14698897 intergenic not near genes chr2L_4_14695001 chr2L_14695001 RAL-228 157 chr2L 14803881 14803912 chr2L 14809084 14809115 copia 7 5203 4.0 1.5 2.8 1.8 5234 chr2L 14803881 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-228 158 chr2L 14840980 14841007 chr2L 14841066 14841094 6 87 1.5 0.5 1.0 3.0 114 chr2L 14840980 3` UTR CR43805 - chr2L 14841037 3` UTR CR43805 - chr2L 14841094 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-228 159 chr2L 15026020 15026049 chr2L 15026101 15026130 12 80 1.0 1.5 1.2 5.5 110 chr2L 15026020 exon GABA-B-R1 + chr2L 15026075 intron GABA-B-R1 + chr2L 15026130 intron GABA-B-R1 + chr2L_12_15025001 chr2L_15025001 RAL-228 160 chr2L 15031552 15031579 chr2L 15031792 15031819 8 240 1.5 0.0 0.8 4.4 267 chr2L 15031552 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031686 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031819 intron GABA-B-R1 + chr2L_8_15030001 chr2L_15030001 RAL-228 161 chr2L 15175266 15175284 chr2L 15175376 15175394 4 110 0.5 2.5 1.5 1.6 128 chr2L 15175266 intron CG4168 - chr2L 15175330 intron CG4168 - chr2L 15175394 intron CG4168 - chr2L_4_15175001 chr2L_15175001 RAL-228 162 chr2L 15369518 15369550 chr2L 15369670 15369702 8 151 1.5 0.0 0.8 4.4 184 chr2L 15369518 intergenic not near genes chr2L 15369610 intergenic not near genes chr2L 15369702 intergenic not near genes chr2L_8_15365001 chr2L_15365001 RAL-228 163 chr2L 15426590 15426603 chr2L 15426666 15426679 4 76 1.5 3.5 2.5 1.1 89 chr2L 15426590 intergenic not near genes chr2L 15426634 intergenic not near genes chr2L 15426679 intergenic not near genes chr2L_4_15425001 chr2L_15425001 RAL-228 164 chr2L 15514319 15514327 chr2L 15514403 15514411 4 84 3.5 6.0 4.8 0.7 92 chr2L 15514319 intergenic not near genes chr2L 15514365 intergenic not near genes chr2L 15514411 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-228 165 chr2L 15823367 15823380 chr2L 15823442 15823456 4 76 1.0 1.0 1.0 2.0 89 chr2L 15823367 intergenic CR44601 - chr2L 15823412 intergenic CR44601 - chr2L 15823456 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-228 166 chr2L 15956025 15956051 chr2L 15957492 15957518 hobo 6 1467 1.5 2.0 1.8 2.1 1493 chr2L 15956025 intron beat-Ib - chr2L 15956772 intron beat-Ib - chr2L 15957518 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-228 167 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 19.0 15.0 17.0 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-228 168 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133321 14.0 15.0 14.5 0.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-228 169 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 19.0 15.0 17.0 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-228 170 chr2L 16280262 16280287 chr2L 16281433 16281458 1360 7 1170 4.0 2.0 3.0 1.8 1196 chr2L 16280262 intron crp - chr2L 16280860 intron crp - chr2L 16281458 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-228 171 chr2L 16335317 16335335 chr2L 16335673 16335692 6 357 1.5 0.0 0.8 3.3 375 chr2L 16335317 exon CG31817 - chr2L 16335504 exon CG31817 - chr2L 16335692 exon CG31817 - chr2L_6_16335001 chr2L_16335001 RAL-228 172 chr2L 16434110 16434131 chr2L 16434192 16434213 4 82 0.5 0.5 0.5 2.7 103 chr2L 16434110 intron CG5888 - chr2L 16434162 intron CG5888 - chr2L 16434213 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-228 173 chr2L 16721032 16721060 chr2L 16721106 16721137 9 76 0.5 3.5 2.0 3.0 105 chr2L 16721032 intron Cyt-c-p + chr2L 16721084 intron Cyt-c-p + chr2L 16721137 intron Cyt-c-p + chr2L_9_16720001 chr2L_16720001 RAL-228 174 chr2L 16939998 16940011 chr2L 16940070 16940089 7 75 0.5 2.0 1.2 3.2 91 chr2L 16939998 intergenic not near genes chr2L 16940044 intergenic not near genes chr2L 16940089 intergenic not near genes chr2L_7_16940001 chr2L_16940001 RAL-228 175 chr2L 17000126 17000147 chr2L 17000247 17000269 5 122 1.5 2.5 2.0 1.7 143 chr2L 17000126 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000269 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-228 176 chr2L 17273191 17273224 chr2L 17277973 17278007 F-element 5 4783 1.5 1.5 1.5 2.0 4816 chr2L 17273191 intergenic not near genes chr2L 17275599 intergenic not near genes chr2L 17278007 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-228 177 chr2L 17287054 17287071 chr2L 17287164 17287170 7 108 3.5 2.5 3.0 1.8 116 chr2L 17287054 exon CG15140 + chr2L 17287112 exon CG15140 + chr2L 17287170 exon CG15140 + chr2L_7_17285001 chr2L_17285001 RAL-228 178 chr2L 17432027 17432042 chr2L 17432134 17432149 1360 5 107 0.0 0.0 0.0 5.0 122 chr2L 17432027 intron Dif - chr2L 17432088 intron Dif - chr2L 17432149 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-228 179 chr2L 17466426 17466456 chr2L 17466519 17466549 9 93 0.0 1.0 0.5 6.0 123 chr2L 17466426 intron BicD - chr2L 17466488 intron BicD - chr2L 17466549 intron BicD - chr2L_9_17465001 chr2L_17465001 RAL-228 180 chr2L 17500828 17500848 chr2L 17500910 17500930 6 82 4.0 2.5 3.2 1.4 102 chr2L 17500828 5` UTR CG6412 - chr2L 17500879 5` UTR CG6412 - chr2L 17500930 5` UTR CG6412 - chr2L_6_17500001 chr2L_17500001 RAL-228 181 chr2L 17673873 17673897 chr2L 17674021 17674045 6 148 2.0 2.5 2.2 1.9 172 chr2L 17673873 intron CadN - chr2L 17673959 intron CadN - chr2L 17674045 intron CadN - chr2L_6_17670001 chr2L_17670001 RAL-228 182 chr2L 17819924 17819950 chr2L 17825127 17825153 copia 4 5203 0.0 3.0 1.5 1.6 5229 chr2L 17819924 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825153 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-228 183 chr2L 17880008 17880025 chr2L 17880095 17880112 5 87 2.0 1.0 1.5 2.0 104 chr2L 17880008 intergenic not near genes chr2L 17880060 intergenic not near genes chr2L 17880112 intergenic not near genes chr2L_5_17880001 chr2L_17880001 RAL-228 184 chr2L 17944417 17944451 chr2L 17944580 17944614 8 162 3.0 2.0 2.5 2.3 197 chr2L 17944417 intergenic not near genes chr2L 17944516 intergenic not near genes chr2L 17944614 intergenic not near genes chr2L_8_17940001 chr2L_17940001 RAL-228 185 chr2L 17951955 17951979 chr2L 17953420 17953446 hobo 6 1466 0.0 1.5 0.8 3.3 1491 chr2L 17951955 intergenic CR44398 -,CR44397 - chr2L 17952700 intergenic not near genes chr2L 17953446 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-228 186 chr2L 18051876 18051905 chr2L 18061023 18061052 roo 5 9146 1.0 2.0 1.5 2.0 9176 chr2L 18051876 intron rdo + chr2L 18056464 intron rdo + chr2L 18061052 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-228 187 chr2L 18143467 18143499 chr2L 18143548 18143563 7 76 2.5 2.5 2.5 2.0 96 chr2L 18143467 intron Socs36E - chr2L 18143515 intron Socs36E - chr2L 18143563 intron Socs36E - chr2L_7_18140001 chr2L_18140001 RAL-228 188 chr2L 18171218 18171250 chr2L 18171392 18171411 7 172 5.0 3.0 4.0 1.4 193 chr2L 18171218 intron CG42750 - chr2L 18171314 intron CG42750 - chr2L 18171411 intron CG42750 - chr2L_7_18170001 chr2L_18170001 RAL-228 189 chr2L 18170759 18170785 chr2L 18171924 18171956 7 1167 16.0 19.0 17.5 0.4 1197 chr2L 18170759 intron CG42750 - chr2L 18171358 intron CG42750 - chr2L 18171956 intron CG42750 - chr2L_7_18170001 chr2L_18170001 RAL-228 190 chr2L 18199047 18199067 chr2L 18199128 18199148 6 81 0.5 1.5 1.0 3.0 101 chr2L 18199047 intron CG42750 - chr2L 18199098 intron CG42750 - chr2L 18199148 intron CG42750 - chr2L_6_18195001 chr2L_18195001 RAL-228 191 chr2L 18345763 18345784 chr2L 18345852 18345870 8 86 4.0 2.0 3.0 2.0 107 chr2L 18345763 intron Fas3 + chr2L 18345816 intron Fas3 + chr2L 18345870 intron Fas3 + chr2L_8_18345001 chr2L_18345001 RAL-228 192 chr2L 18541734 18541757 chr2L 18541810 18541833 4 75 2.0 1.0 1.5 1.6 99 chr2L 18541734 intron Pde11 - chr2L 18541784 intron Pde11 - chr2L 18541833 intron Pde11 - chr2L_4_18540001 chr2L_18540001 RAL-228 193 chr2L 18561557 18561577 chr2L 18561658 18561678 5 101 2.0 0.0 1.0 2.5 121 chr2L 18561557 intron Pde11 - chr2L 18561618 intron Pde11 - chr2L 18561678 intron Pde11 - chr2L_5_18560001 chr2L_18560001 RAL-228 194 chr2L 18581139 18581165 chr2L 18581221 18581247 6 82 2.5 1.0 1.8 2.1 108 chr2L 18581139 intron Pde11 - chr2L 18581193 intron Pde11 - chr2L 18581247 intron Pde11 - chr2L_6_18580001 chr2L_18580001 RAL-228 195 chr2L 18629371 18629403 chr2L 18629456 18629487 7 81 0.0 2.5 1.2 3.2 116 chr2L 18629371 intron MESR3 + chr2L 18629429 intron MESR3 + chr2L 18629487 intron MESR3 + chr2L_7_18625001 chr2L_18625001 RAL-228 196 chr2L 18816740 18816775 chr2L 18816872 18816907 12 132 3.5 2.5 3.0 3.0 167 chr2L 18816740 intergenic not near genes chr2L 18816824 intergenic not near genes chr2L 18816907 intergenic not near genes chr2L_12_18815001 chr2L_18815001 RAL-228 197 chr2L 18898401 18898419 chr2L 18898483 18898501 4 82 3.5 0.5 2.0 1.3 100 chr2L 18898401 intergenic not near genes chr2L 18898451 intergenic not near genes chr2L 18898501 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-228 198 chr2L 18981760 18981782 chr2L 18981837 18981853 5 76 2.5 3.0 2.8 1.3 93 chr2L 18981760 intron Swip-1 - chr2L 18981806 intron Swip-1 - chr2L 18981853 intron Swip-1 - chr2L_5_18980001 chr2L_18980001 RAL-228 199 chr2L 18984249 18984282 chr2L 18984326 18984358 7 75 1.5 2.5 2.0 2.3 109 chr2L 18984249 intron Swip-1 - chr2L 18984304 intron Swip-1 - chr2L 18984358 intron Swip-1 - chr2L_7_18980001 chr2L_18980001 RAL-228 200 chr2L 19102520 19102542 chr2L 19102595 19102617 6 76 1.0 2.5 1.8 2.1 97 chr2L 19102520 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102568 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102617 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L_6_19100001 chr2L_19100001 RAL-228 201 chr2L 19121055 19121072 chr2L 19121132 19121149 4 78 0.5 0.5 0.5 2.7 94 chr2L 19121055 intergenic l(2)37Cc - chr2L 19121102 intergenic l(2)37Cc - chr2L 19121149 intergenic l(2)37Cc - chr2L_4_19120001 chr2L_19120001 RAL-228 202 chr2L 19270919 19270926 chr2L 19271009 19271016 4 90 0.0 3.5 1.8 1.4 97 chr2L 19270919 intron CR44190 - chr2L 19270968 intron CR44190 - chr2L 19271016 intron CR44190 - chr2L_4_19270001 chr2L_19270001 RAL-228 203 chr2L 19345016 19345047 chr2L 19357225 19357256 blood 7 12207 2.0 1.0 1.5 2.8 12240 chr2L 19345016 intron dnt - chr2L 19351136 intron dnt - chr2L 19357256 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-228 204 chr2L 19357546 19357568 chr2L 19357635 19357658 8 88 2.5 2.0 2.2 2.5 112 chr2L 19357546 intron dnt - chr2L 19357602 intron dnt - chr2L 19357658 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-228 205 chr2L 19361876 19361907 chr2L 19361963 19361994 13 87 2.5 4.0 3.2 3.1 118 chr2L 19361876 intron dnt - chr2L 19361935 intron dnt - chr2L 19361994 intron dnt - chr2L_13_19360001 chr2L_19360001 RAL-228 206 chr2L 19406224 19406232 chr2L 19406319 19406326 4 95 1.0 0.0 0.5 2.7 102 chr2L 19406224 intron Pax - chr2L 19406275 intron Pax - chr2L 19406326 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-228 207 chr2L 19407717 19407737 chr2L 19407914 19407934 9 197 4.0 2.0 3.0 2.2 217 chr2L 19407717 intron Pax - chr2L 19407826 intron Pax - chr2L 19407934 intron Pax - chr2L_9_19405001 chr2L_19405001 RAL-228 208 chr2L 19441070 19441088 chr2L 19441147 19441165 7 77 3.5 2.0 2.8 1.8 95 chr2L 19441070 intron CG10237 - chr2L 19441118 intron CG10237 - chr2L 19441165 5` UTR CG10237 - chr2L_7_19440001 chr2L_19440001 RAL-228 209 chr2L 19620092 19620126 chr2L 19621081 19621115 jockey 9 988 6.5 1.5 4.0 1.8 1023 chr2L 19620092 intron Lar + chr2L 19620604 intron Lar + chr2L 19621115 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-228 210 chr2L 19638535 19638568 chr2L 19638623 19638654 10 88 2.5 1.0 1.8 3.6 119 chr2L 19638535 intron Lar + chr2L 19638594 intron Lar + chr2L 19638654 intron Lar + chr2L_10_19635001 chr2L_19635001 RAL-228 211 chr2L 19652579 19652604 chr2L 19674015 19674040 opus 5 21436 2.0 0.5 1.2 2.3 21461 chr2L 19652579 intron Lar + chr2L 19663310 intron Lar + chr2L 19674040 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-228 212 chr2L 19737353 19737387 chr2L 19740822 19740856 1360 11 3466 2.5 5.5 4.0 2.2 3503 chr2L 19737353 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_11_19735001 chr2L_19735001 RAL-228 213 chr2L 19762813 19762838 chr2L 19763055 19763080 pogo 4 242 3.5 1.0 2.2 1.2 267 chr2L 19762813 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763080 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-228 214 chr2L 19774042 19774054 chr2L 19774122 19774134 4 80 2.5 2.0 2.2 1.2 92 chr2L 19774042 intergenic not near genes chr2L 19774088 intergenic not near genes chr2L 19774134 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-228 215 chr2L 19837275 19837309 chr2L 19837355 19837389 5 80 2.5 4.0 3.2 1.2 114 chr2L 19837275 intron sick + chr2L 19837332 intron sick + chr2L 19837389 intron sick + chr2L_5_19835001 chr2L_19835001 RAL-228 216 chr2L 19901401 19901427 chr2L 19901593 19901619 4 191 0.0 1.5 0.8 2.2 218 chr2L 19901401 intron sick + chr2L 19901510 intron sick + chr2L 19901619 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-228 217 chr2L 19911289 19911325 chr2L 19911377 19911413 11 88 2.0 1.0 1.5 4.4 124 chr2L 19911289 intron,3` UTR sick +,CR43097 - chr2L 19911351 intron,3` UTR sick +,CR43097 - chr2L 19911413 intron,3` UTR sick +,CR43097 - chr2L_11_19910001 chr2L_19910001 RAL-228 218 chr2L 20041432 20041462 chr2L 20041515 20041547 9 83 1.5 4.0 2.8 2.4 115 chr2L 20041432 intron sNPF + chr2L 20041490 intron sNPF + chr2L 20041547 intron sNPF + chr2L_9_20040001 chr2L_20040001 RAL-228 219 chr2L 20098722 20098745 chr2L 20099006 20099029 4 284 0.0 2.5 1.2 1.8 307 chr2L 20098722 intron Kua + chr2L 20098876 intron Kua + chr2L 20099029 intron Kua + chr2L_4_20095001 chr2L_20095001 RAL-228 220 chr2L 20226266 20226288 chr2L 20226348 20226369 8 82 1.0 3.0 2.0 2.7 103 chr2L 20226266 intergenic not near genes chr2L 20226318 intergenic not near genes chr2L 20226369 intergenic not near genes chr2L_8_20225001 chr2L_20225001 RAL-228 221 chr2L 20296508 20296536 chr2L 20296587 20296617 6 77 1.5 1.5 1.5 2.4 109 chr2L 20296508 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296617 intergenic CR43414 - chr2L_6_20295001 chr2L_20295001 RAL-228 222 chr2L 20303171 20303189 chr2L 20310638 20310656 blood 4 7468 1.0 1.5 1.2 1.8 7485 chr2L 20303171 intergenic not near genes chr2L 20306914 intergenic not near genes chr2L 20310656 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-228 223 chr2L 20310880 20310919 chr2L 20310958 20310996 4 77 0.0 2.5 1.2 1.8 116 chr2L 20310880 intergenic spir + chr2L 20310938 intergenic spir + chr2L 20310996 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-228 224 chr2L 20312735 20312755 chr2L 20313035 20313042 5 297 2.0 1.0 1.5 2.0 307 chr2L 20312735 intron spir + chr2L 20312888 intron spir + chr2L 20313042 intron spir + chr2L_5_20310001 chr2L_20310001 RAL-228 225 chr2L 20315702 20315736 chr2L 20315795 20315829 8 92 1.0 2.0 1.5 3.2 127 chr2L 20315702 intron spir + chr2L 20315766 intron spir + chr2L 20315829 intron spir + chr2L_8_20315001 chr2L_20315001 RAL-228 226 chr2L 20338714 20338741 chr2L 20338790 20338821 15 79 3.0 2.5 2.8 3.9 107 chr2L 20338714 intron spir + chr2L 20338768 intron spir + chr2L 20338821 intron spir + chr2L_15_20335001 chr2L_20335001 RAL-228 227 chr2L 20376184 20376217 chr2L 20377473 20377507 14 1289 26.5 23.0 24.8 0.5 1323 chr2L 20376184 intergenic not near genes chr2L 20376846 intergenic CG16798 - chr2L 20377507 exon CG16798 - chr2L_14_20375001 chr2L_20375001 RAL-228 228 chr2L 20395497 20395523 chr2L 20395677 20395703 7 180 1.0 0.5 0.8 3.9 206 chr2L 20395497 intron CG10947 - chr2L 20395600 intron CG10947 - chr2L 20395703 intron CG10947 - chr2L_7_20395001 chr2L_20395001 RAL-228 229 chr2L 20498029 20498055 chr2L 20498125 20498151 6 96 2.0 2.5 2.2 1.9 122 chr2L 20498029 intergenic not near genes chr2L 20498090 intergenic not near genes chr2L 20498151 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-228 230 chr2L 20502970 20502982 chr2L 20508372 20508393 5 5404 20.5 3.0 11.8 0.4 5423 chr2L 20502970 intergenic not near genes chr2L 20505682 intergenic not near genes chr2L 20508393 intergenic not near genes chr2L_5_20505001 chr2L_20505001 RAL-228 231 chr2L 20549132 20549155 chr2L 20549213 20549237 7 82 1.5 1.0 1.2 3.2 105 chr2L 20549132 intergenic not near genes chr2L 20549184 intergenic not near genes chr2L 20549237 intergenic not near genes chr2L_7_20545001 chr2L_20545001 RAL-228 232 chr2L 20553187 20553207 chr2L 20553263 20553283 4 76 1.0 1.5 1.2 1.8 96 chr2L 20553187 intergenic not near genes chr2L 20553235 intergenic not near genes chr2L 20553283 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-228 233 chr2L 20568664 20568686 chr2L 20569054 20569076 X-element 7 390 1.0 2.5 1.8 2.5 412 chr2L 20568664 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569076 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-228 234 chr2L 20576217 20576237 chr2L 20583685 20583706 blood 7 7469 3.0 1.0 2.0 2.3 7489 chr2L 20576217 intergenic CR45347 + chr2L 20579962 intergenic not near genes chr2L 20583706 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-228 235 chr2L 20821508 20821522 chr2L 20821656 20821670 9 148 2.0 4.5 3.2 2.1 162 chr2L 20821508 intergenic not near genes chr2L 20821589 intergenic not near genes chr2L 20821670 intergenic not near genes chr2L_9_20820001 chr2L_20820001 RAL-228 236 chr2L 20835806 20835833 chr2L 20836523 20836530 Quasimodo 4 710 0.0 1.0 0.5 2.7 724 chr2L 20835806 5` UTR Oseg5 - chr2L 20836168 intergenic Oseg5 -,Spn38F - chr2L 20836530 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-228 237 chr2L 20901470 20901485 chr2L 20902633 20902638 1360 5 1161 0.0 1.5 0.8 2.8 1168 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902054 intron,intron CG43739 -,sky - chr2L 20902638 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-228 238 chr2L 20976651 20976679 chr2L 20981466 20981494 X-element 4 4815 0.0 2.0 1.0 2.0 4843 chr2L 20976651 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981494 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-228 239 chr2L 21020274 21020297 chr2L 21023951 21023971 NOF 6 3676 3.5 4.0 3.8 1.2 3697 chr2L 21020274 intron CG42238 - chr2L 21022122 intron CG42238 - chr2L 21023971 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-228 240 chr2L 21041136 21041163 chr2L 21049396 21049424 Tirant 6 8260 0.5 2.0 1.2 2.7 8288 chr2L 21041136 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049424 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-228 241 chr2L 21286604 21286634 chr2L 21286682 21286712 5 78 1.5 0.0 0.8 2.8 108 chr2L 21286604 exon Mio - chr2L 21286658 intron Mio - chr2L 21286712 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-228 242 chr2L 21711994 21712014 chr2L 21712071 21712093 7 78 0.5 1.5 1.0 3.5 99 chr2L 21711994 intron CG31619 + chr2L 21712044 intron CG31619 + chr2L 21712093 intron CG31619 + chr2L_7_21710001 chr2L_21710001 RAL-228 243 chr2L 21771238 21771251 chr2L 21771345 21771358 6 107 4.0 2.5 3.2 1.4 120 chr2L 21771238 intron CG31612 - chr2L 21771298 intron CG31612 - chr2L 21771358 intron CG31612 - chr2L_6_21770001 chr2L_21770001 RAL-228 244 chr2L 21859316 21859349 chr2L 21859396 21859429 11 78 3.0 4.0 3.5 2.4 113 chr2L 21859316 intron CR44917 + chr2L 21859372 intron CR44917 + chr2L 21859429 intron CR44917 + chr2L_11_21855001 chr2L_21855001 RAL-228 245 chr2L 21981682 21981715 chr2L 21990847 21990880 roo 6 9165 3.5 4.0 3.8 1.2 9198 chr2L 21981682 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-228 246 chr2L 22239432 22239461 chr2L 22239506 22239541 4 79 5.0 1.5 3.2 1.0 109 chr2L 22239432 3` UTR CR43765 - chr2L 22239486 3` UTR CR43765 - chr2L 22239541 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-228 247 chr2L 22258620 22258642 chr2L 22260744 22260766 G6 4 2124 2.0 0.5 1.2 1.8 2146 chr2L 22258620 intergenic Tif-IA + chr2L 22259693 intergenic not near genes chr2L 22260766 intergenic not near genes chr2L_4_22255001 chr2L_22255001 RAL-228 248 chr2L 22312735 22312763 chr2L 22313916 22313944 4 1181 4.0 9.5 6.8 0.5 1209 chr2L 22312735 intron CG17018 + chr2L 22313340 intron CG17018 + chr2L 22313944 intron CG17018 + chr2L_4_22310001 chr2L_22310001 RAL-228 249 chr2L 22314051 22314074 chr2L 22363439 22363462 1360 6 49388 6.0 2.5 4.2 1.2 49411 chr2L 22314051 intron CG17018 + chr2L 22338756 intron CG17018 + chr2L 22363462 5` UTR CG17018 + chr2L_6_22335001 chr2L_22335001 RAL-228 250 chr2L 22364240 22364272 chr2L 22365191 22365223 8 949 9.0 11.5 10.2 0.7 983 chr2L 22364240 exon CG17018 + chr2L 22364732 intron CG17018 + chr2L 22365223 exon CG17018 + chr2L_8_22360001 chr2L_22360001 RAL-228 251 chr2L 22365278 22365303 chr2L 22365383 22365404 7 104 9.0 6.0 7.5 0.8 126 chr2L 22365278 exon CG17018 + chr2L 22365341 intron CG17018 + chr2L 22365404 exon CG17018 + chr2L_7_22365001 chr2L_22365001 RAL-228 252 chr2L 22367119 22367157 chr2L 22367234 22367272 13 114 8.5 6.5 7.5 1.5 153 chr2L 22367119 exon CG17018 + chr2L 22367196 intron CG17018 + chr2L 22367272 exon CG17018 + chr2L_13_22365001 chr2L_22365001 RAL-228 253 chr2L 22367447 22367477 chr2L 22367568 22367598 8 121 4.5 7.5 6.0 1.1 151 chr2L 22367447 exon CG17018 + chr2L 22367522 intron CG17018 + chr2L 22367598 exon CG17018 + chr2L_8_22365001 chr2L_22365001 RAL-228 254 chr2L 22548925 22548943 chr2L 22550150 22550168 1360 5 1225 0.5 4.5 2.5 1.4 1243 chr2L 22548925 intergenic CG17490 + chr2L 22549546 intergenic not near genes chr2L 22550168 intergenic CG17493 + chr2L_5_22545001 chr2L_22545001 RAL-228 255 chr2L 22679801 22679823 chr2L 22684573 22684595 F-element 4 4772 1.0 4.0 2.5 1.1 4794 chr2L 22679801 intron CG40006 - chr2L 22682198 intron CG40006 - chr2L 22684595 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-228 256 chr2R 529332 529344 chr2R 537957 537969 Max-element 4 8625 0.0 1.5 0.8 2.2 8637 chr2R 529332 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537969 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-228 257 chr2R 1684832 1684848 chr2R 1684937 1684953 4 105 0.0 1.0 0.5 2.7 121 chr2R 1684832 intron CG41520 + chr2R 1684892 intron CG41520 + chr2R 1684953 intron CG41520 + chr2R_4_1680001 chr2R_1680001 RAL-228 258 chr2R 3291934 3292103 chr2R 3915102 3915264 5 623164 5.0 9.5 7.2 0.6 623330 chr2R 3291934 intergenic not near genes chr2R 3603599 intergenic not near genes chr2R 3915264 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-228 259 chr2R 3293745 3293759 chr2R 3293823 3293837 4 78 2.0 0.0 1.0 2.0 92 chr2R 3293745 intergenic not near genes chr2R 3293791 intergenic not near genes chr2R 3293837 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-228 260 chr2R 4580199 4580229 chr2R 4580825 4580856 6 626 2.0 2.5 2.2 1.9 657 chr2R 4580199 intergenic not near genes chr2R 4580528 intergenic not near genes chr2R 4580856 intergenic not near genes chr2R_6_4580001 chr2R_4580001 RAL-228 261 chr2R 4604548 4604571 chr2R 4604627 4604650 7 79 2.5 0.0 1.2 3.2 102 chr2R 4604548 intron p120ctn + chr2R 4604599 intron p120ctn + chr2R 4604650 intron p120ctn + chr2R_7_4600001 chr2R_4600001 RAL-228 262 chr2R 4656778 4656807 chr2R 4656985 4657017 11 209 26.5 18.5 22.5 0.5 239 chr2R 4656778 intergenic not near genes chr2R 4656898 intergenic not near genes chr2R 4657017 intergenic not near genes chr2R_11_4655001 chr2R_4655001 RAL-228 263 chr2R 5075226 5075248 chr2R 5075349 5075374 6 127 3.0 0.0 1.5 2.4 148 chr2R 5075226 intergenic not near genes chr2R 5075300 intergenic not near genes chr2R 5075374 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-228 264 chr2R 5075351 5075370 chr2R 5075767 5075786 5 415 0.0 4.0 2.0 1.7 435 chr2R 5075351 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075786 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-228 265 chr2R 5080795 5080815 chr2R 5080886 5080906 6 91 1.0 2.0 1.5 2.4 111 chr2R 5080795 intergenic not near genes chr2R 5080850 intergenic not near genes chr2R 5080906 intergenic not near genes chr2R_6_5080001 chr2R_5080001 RAL-228 266 chr2R 5237351 5237373 chr2R 5237433 5237455 6 82 1.5 0.0 0.8 3.3 104 chr2R 5237351 intron Nipped-A - chr2R 5237403 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_6_5235001 chr2R_5235001 RAL-228 267 chr2R 5509521 5509541 chr2R 5509617 5509637 5 96 0.0 1.5 0.8 2.8 116 chr2R 5509521 intron CG30438 + chr2R 5509579 intron CG30438 + chr2R 5509637 intron CG30438 + chr2R_5_5505001 chr2R_5505001 RAL-228 268 chr2R 5861289 5861317 chr2R 5861410 5861438 9 118 1.5 4.0 2.8 2.4 149 chr2R 5861289 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861438 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-228 269 chr2R 5869275 5869300 chr2R 5874351 5874376 flea 8 5076 2.5 1.5 2.0 2.7 5101 chr2R 5869275 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874376 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-228 270 chr2R 6096720 6096746 chr2R 6101910 6101944 BS 8 5196 7.5 3.0 5.2 1.3 5224 chr2R 6096720 intron EcR - chr2R 6099332 intron EcR - chr2R 6101944 intron EcR - chr2R_8_6095001 chr2R_6095001 RAL-228 271 chr2R 6129337 6129357 chr2R 6129415 6129435 4 78 0.5 2.0 1.2 1.8 98 chr2R 6129337 intron EcR - chr2R 6129386 intron EcR - chr2R 6129435 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-228 272 chr2R 6494526 6494555 chr2R 6499288 6499317 F-element 4 4762 1.0 0.5 0.8 2.2 4791 chr2R 6494526 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499317 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-228 273 chr2R 6539821 6539854 chr2R 6539944 6539969 4 119 0.5 0.0 0.2 3.3 148 chr2R 6539821 intron jing + chr2R 6539895 intron jing + chr2R 6539969 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-228 274 chr2R 6550925 6550948 chr2R 6551000 6551024 4 76 1.0 1.0 1.0 2.0 99 chr2R 6550925 intron jing + chr2R 6550974 intron jing + chr2R 6551024 intron jing + chr2R_4_6550001 chr2R_6550001 RAL-228 275 chr2R 7025899 7025928 chr2R 7025988 7026017 6 88 1.0 3.0 2.0 2.0 118 chr2R 7025899 intron Tsp42Ef + chr2R 7025958 intron Tsp42Ef + chr2R 7026017 intron Tsp42Ef + chr2R_6_7025001 chr2R_7025001 RAL-228 276 chr2R 7029711 7029730 chr2R 7029802 7029821 6 91 1.0 2.0 1.5 2.4 110 chr2R 7029711 intron Tsp42Eg + chr2R 7029766 intron Tsp42Eg + chr2R 7029821 intron Tsp42Eg + chr2R_6_7025001 chr2R_7025001 RAL-228 277 chr2R 7164275 7164287 chr2R 7164466 7164478 4 191 0.5 8.0 4.2 0.8 203 chr2R 7164275 intron pk + chr2R 7164376 intron pk + chr2R 7164478 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-228 278 chr2R 7235822 7235846 chr2R 7240914 7240938 jockey 5 5088 2.0 4.0 3.0 1.2 5116 chr2R 7235822 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240938 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-228 279 chr2R 7243075 7243094 chr2R 7243177 7243196 4 102 0.0 0.0 0.0 4.0 121 chr2R 7243075 3` UTR Ady43A - chr2R 7243136 3` UTR Ady43A - chr2R 7243196 3` UTR Ady43A - chr2R_4_7240001 chr2R_7240001 RAL-228 280 chr2R 7488913 7488947 chr2R 7489005 7489040 6 93 2.0 2.0 2.0 2.0 127 chr2R 7488913 intron wech - chr2R 7488976 intron wech - chr2R 7489040 intron wech - chr2R_6_7485001 chr2R_7485001 RAL-228 281 chr2R 7554107 7554122 chr2R 7554194 7554209 4 87 3.0 1.0 2.0 1.3 102 chr2R 7554107 intron Corin + chr2R 7554158 intron Corin + chr2R 7554209 intron Corin + chr2R_4_7550001 chr2R_7550001 RAL-228 282 chr2R 7604762 7604775 chr2R 7604884 7604904 8 124 1.5 0.5 1.0 4.0 142 chr2R 7604762 intron CG1358 - chr2R 7604833 intron CG1358 - chr2R 7604904 intron CG1358 - chr2R_8_7600001 chr2R_7600001 RAL-228 283 chr2R 7608409 7608422 chr2R 7613610 7613625 I-element 5 5202 2.5 0.0 1.2 2.3 5216 chr2R 7608409 intron CG1358 - chr2R 7611017 intron CG1358 - chr2R 7613625 intron CG1358 - chr2R_5_7610001 chr2R_7610001 RAL-228 284 chr2R 7623808 7623836 chr2R 7624651 7624657 4 827 17.5 10.0 13.8 0.3 849 chr2R 7623808 intron CG43340 + chr2R 7624232 intron CG43340 + chr2R 7624657 intron CG43340 + chr2R_4_7620001 chr2R_7620001 RAL-228 285 chr2R 7743484 7743504 chr2R 7743564 7743585 5 81 1.5 2.0 1.8 1.8 101 chr2R 7743484 intron,intron CG30497 -,CG45093 - chr2R 7743534 intron,intron CG30497 -,CG45093 - chr2R 7743585 intron,intron CG30497 -,CG45093 - chr2R_5_7740001 chr2R_7740001 RAL-228 286 chr2R 7760289 7760302 chr2R 7760425 7760439 4 137 1.0 4.5 2.8 1.1 150 chr2R 7760289 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760439 intron,intron CG30497 -,CG45093 - chr2R_4_7760001 chr2R_7760001 RAL-228 287 chr2R 7760304 7760306 chr2R 7760421 7760423 6 124 0.5 4.5 2.5 1.7 119 chr2R 7760304 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760423 intron,intron CG30497 -,CG45093 - chr2R_6_7760001 chr2R_7760001 RAL-228 288 chr2R 7869196 7869216 chr2R 7873981 7874001 Doc 7 4786 2.5 3.0 2.8 1.8 4805 chr2R 7869196 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874001 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-228 289 chr2R 7916439 7916454 chr2R 7916524 7916539 8 85 1.5 4.0 2.8 2.1 100 chr2R 7916439 5` UTR CG12159 - chr2R 7916489 intergenic CG12159 -,Cul1 + chr2R 7916539 intergenic CG12159 -,Cul1 + chr2R_8_7915001 chr2R_7915001 RAL-228 290 chr2R 7956087 7956106 chr2R 7956162 7956182 4 75 0.5 1.0 0.8 2.2 95 chr2R 7956087 intergenic CG2906 +,CG14764 - chr2R 7956134 intergenic CG2906 +,CG14764 - chr2R 7956182 5` UTR CG2906 + chr2R_4_7955001 chr2R_7955001 RAL-228 291 chr2R 8015650 8015684 chr2R 8017673 8017707 10 2021 1.0 5.0 3.0 2.5 2057 chr2R 8015650 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-228 292 chr2R 8067064 8067098 chr2R 8067148 8067182 8 84 0.0 4.0 2.0 2.7 118 chr2R 8067064 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067182 exon CG17977 - chr2R_8_8065001 chr2R_8065001 RAL-228 293 chr2R 8089254 8089285 chr2R 8089339 8089370 4 86 1.0 0.0 0.5 2.7 116 chr2R 8089254 3` UTR sut2 + chr2R 8089312 intergenic sut2 +,sut3 + chr2R 8089370 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-228 294 chr2R 8249564 8249597 chr2R 8249646 8249679 4 82 1.5 0.0 0.8 2.2 115 chr2R 8249564 5` UTR CG44439 - chr2R 8249622 intergenic CG44439 - chr2R 8249679 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-228 295 chr2R 8330863 8330889 chr2R 8331349 8331375 roo 5 486 3.5 0.5 2.0 1.7 512 chr2R 8330863 intron pdm3 + chr2R 8331119 intron pdm3 + chr2R 8331375 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-228 296 chr2R 8368188 8368218 chr2R 8368268 8368298 4 80 4.0 0.5 2.2 1.2 110 chr2R 8368188 intron pdm3 + chr2R 8368243 intron pdm3 + chr2R 8368298 intron pdm3 + chr2R_4_8365001 chr2R_8365001 RAL-228 297 chr2R 8398209 8398233 chr2R 8402990 8403014 Doc 10 4778 4.5 1.5 3.0 2.5 4805 chr2R 8398209 intron CG2121 - chr2R 8400612 intron CG2121 - chr2R 8403014 intron CG2121 - chr2R_10_8400001 chr2R_8400001 RAL-228 298 chr2R 8508780 8508794 chr2R 8508840 8508855 5 70 0.5 2.5 1.5 2.0 75 chr2R 8508780 intron mtt - chr2R 8508818 intron mtt - chr2R 8508855 intron mtt - chr2R_5_8505001 chr2R_8505001 RAL-228 299 chr2R 8530211 8530228 chr2R 8530325 8530343 5 115 4.0 2.5 3.2 1.2 132 chr2R 8530211 intron mtt - chr2R 8530277 intron mtt - chr2R 8530343 intron mtt - chr2R_5_8530001 chr2R_8530001 RAL-228 300 chr2R 8722762 8722782 chr2R 8723003 8723023 pogo 5 241 4.0 3.5 3.8 1.0 261 chr2R 8722762 intron CG14767 - chr2R 8722892 intron CG14767 - chr2R 8723023 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-228 301 chr2R 8777930 8777942 chr2R 8784134 8784146 diver 5 6204 0.5 1.5 1.0 2.5 6216 chr2R 8777930 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784146 intergenic not near genes chr2R_5_8780001 chr2R_8780001 RAL-228 302 chr2R 9230226 9230238 chr2R 9230306 9230317 6 78 3.0 5.5 4.2 1.2 91 chr2R 9230226 intron hig - chr2R 9230272 intron hig - chr2R 9230317 exon hig - chr2R_6_9230001 chr2R_9230001 RAL-228 303 chr2R 9368125 9368147 chr2R 9368201 9368219 6 72 5.5 1.0 3.2 1.4 94 chr2R 9368125 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368219 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-228 304 chr2R 9510670 9510693 chr2R 9510786 9510808 7 116 0.5 2.0 1.2 3.2 138 chr2R 9510670 intron brp + chr2R 9510739 intron brp + chr2R 9510808 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-228 305 chr2R 9558400 9558410 chr2R 9561359 9561374 4 2961 17.0 14.0 15.5 0.2 2974 chr2R 9558400 intergenic not near genes chr2R 9559887 3` UTR,exon CR45281 -,Or45b + chr2R 9561374 3` UTR CR45281 - chr2R_4_9555001 chr2R_9555001 RAL-228 306 chr2R 9859200 9859229 chr2R 9861550 9861579 8 2350 10.0 7.5 8.8 0.8 2379 chr2R 9859200 intron CG1516 - chr2R 9860390 intron CG1516 - chr2R 9861579 intergenic CR44293 +,CG1516 - chr2R_8_9860001 chr2R_9860001 RAL-228 307 chr2R 10001521 10001547 chr2R 10001603 10001630 9 82 1.5 1.5 1.5 3.6 109 chr2R 10001521 intron Pka-R2 - chr2R 10001576 intron Pka-R2 - chr2R 10001630 intron Pka-R2 - chr2R_9_10000001 chr2R_10000001 RAL-228 308 chr2R 10005866 10005883 chr2R 10007012 10007039 1360 6 1158 2.5 3.5 3.0 1.5 1173 chr2R 10005866 intron Pka-R2 - chr2R 10006452 intron Pka-R2 - chr2R 10007039 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-228 309 chr2R 10147640 10147661 chr2R 10147723 10147744 4 83 4.5 0.5 2.5 1.1 104 chr2R 10147640 intron KCNQ - chr2R 10147692 intron KCNQ - chr2R 10147744 intron KCNQ - chr2R_4_10145001 chr2R_10145001 RAL-228 310 chr2R 10352674 10352691 chr2R 10352751 10352768 4 77 2.5 0.0 1.2 1.8 94 chr2R 10352674 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352721 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352768 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-228 311 chr2R 10385819 10385838 chr2R 10385933 10385952 4 114 1.5 3.5 2.5 1.1 133 chr2R 10385819 intron CG42732 - chr2R 10385886 intron CG42732 - chr2R 10385952 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-228 312 chr2R 10400399 10400428 chr2R 10400479 10400507 12 80 1.5 6.5 4.0 2.4 108 chr2R 10400399 intron CG42732 - chr2R 10400453 intron CG42732 - chr2R 10400507 intron CG42732 - chr2R_12_10400001 chr2R_10400001 RAL-228 313 chr2R 10445323 10445355 chr2R 10445409 10445422 10 74 0.5 2.5 1.5 4.0 99 chr2R 10445323 intron Galphao + chr2R 10445372 intron Galphao + chr2R 10445422 intron Galphao + chr2R_10_10445001 chr2R_10445001 RAL-228 314 chr2R 10477172 10477186 chr2R 10477512 10477526 4 340 1.5 0.5 1.0 2.0 354 chr2R 10477172 intron whd - chr2R 10477349 intron whd - chr2R 10477526 intron whd - chr2R_4_10475001 chr2R_10475001 RAL-228 315 chr2R 10585575 10585581 chr2R 10594150 10594162 Tirant 5 8581 2.5 1.0 1.8 1.8 8587 chr2R 10585575 intron psq + chr2R 10589868 intron psq + chr2R 10594162 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-228 316 chr2R 10827339 10827362 chr2R 10827420 10827449 7 85 1.5 3.0 2.2 2.2 110 chr2R 10827339 exon CG12325 + chr2R 10827394 3` UTR CG12325 + chr2R 10827449 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_7_10825001 chr2R_10825001 RAL-228 317 chr2R 10834237 10834246 chr2R 10834709 10834733 4 476 9.0 18.0 13.5 0.3 496 chr2R 10834237 intron CG12344 - chr2R 10834485 intron CG12344 - chr2R 10834733 intron CG12344 - chr2R_4_10830001 chr2R_10830001 RAL-228 318 chr2R 10948024 10948060 chr2R 10955575 10955610 17.6 7 7548 1.0 1.5 1.2 3.2 7586 chr2R 10948024 intergenic not near genes chr2R 10951817 intergenic not near genes chr2R 10955610 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-228 319 chr2R 11032648 11032666 chr2R 11032742 11032760 5 94 1.5 3.5 2.5 1.4 112 chr2R 11032648 intron luna - chr2R 11032704 intron luna - chr2R 11032760 intron luna - chr2R_5_11030001 chr2R_11030001 RAL-228 320 chr2R 11039724 11039759 chr2R 11039809 11039822 7 81 3.0 0.5 1.8 2.5 98 chr2R 11039724 intron luna - chr2R 11039773 intron luna - chr2R 11039822 intron luna - chr2R_7_11035001 chr2R_11035001 RAL-228 321 chr2R 11292967 11292991 chr2R 11293046 11293070 7 79 5.5 0.0 2.8 1.8 103 chr2R 11292967 exon,3` UTR dare -,CG30033 + chr2R 11293018 5` UTR,3` UTR dare -,CG30033 + chr2R 11293070 5` UTR,3` UTR dare -,CG30033 + chr2R_7_11290001 chr2R_11290001 RAL-228 322 chr2R 11415524 11415542 chr2R 11418673 11418690 opus 4 3148 2.0 2.5 2.2 1.2 3166 chr2R 11415524 intron Drip - chr2R 11417107 intron Drip - chr2R 11418690 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-228 323 chr2R 11472648 11472676 chr2R 11473845 11473869 pogo 8 1196 3.0 2.5 2.8 2.1 1221 chr2R 11472648 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473869 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-228 324 chr2R 11605294 11605302 chr2R 11605462 11605470 5 168 4.5 4.0 4.2 1.0 176 chr2R 11605294 intron tou - chr2R 11605382 intron tou - chr2R 11605470 intron tou - chr2R_5_11605001 chr2R_11605001 RAL-228 325 chr2R 11614623 11614640 chr2R 11614711 11614728 4 88 0.5 1.0 0.8 2.2 105 chr2R 11614623 intron tou - chr2R 11614676 intron tou - chr2R 11614728 intron tou - chr2R_4_11610001 chr2R_11610001 RAL-228 326 chr2R 11775941 11775952 chr2R 11776024 11776034 4 83 2.0 1.5 1.8 1.4 93 chr2R 11775941 intron ths + chr2R 11775988 intron ths + chr2R 11776034 intron ths + chr2R_4_11775001 chr2R_11775001 RAL-228 327 chr2R 11802570 11802598 chr2R 11802646 11802674 10 75 0.5 1.0 0.8 5.6 104 chr2R 11802570 intron ths + chr2R 11802622 intron ths + chr2R 11802674 intron ths + chr2R_10_11800001 chr2R_11800001 RAL-228 328 chr2R 12073399 12073416 chr2R 12073487 12073506 7 90 1.5 1.0 1.2 3.2 107 chr2R 12073399 intron CG8888 - chr2R 12073452 intron CG8888 - chr2R 12073506 intron CG8888 - chr2R_7_12070001 chr2R_12070001 RAL-228 329 chr2R 12120412 12120437 chr2R 12120491 12120519 12 79 4.0 5.5 4.8 2.1 107 chr2R 12120412 intergenic not near genes chr2R 12120466 intergenic not near genes chr2R 12120519 intergenic not near genes chr2R_12_12120001 chr2R_12120001 RAL-228 330 chr2R 12187471 12187508 chr2R 12190087 12190124 45 2618 118.5 65.0 91.8 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_45_12185001 chr2R_12185001 RAL-228 331 chr2R 12217575 12217598 chr2R 12217656 12217679 5 81 2.0 2.0 2.0 1.7 104 chr2R 12217575 intergenic not near genes chr2R 12217627 intergenic not near genes chr2R 12217679 intergenic not near genes chr2R_5_12215001 chr2R_12215001 RAL-228 332 chr2R 12363399 12363412 chr2R 12363829 12363844 4 431 2.5 4.0 3.2 1.0 445 chr2R 12363399 intergenic CG30043 + chr2R 12363622 intergenic CG30043 + chr2R 12363844 intergenic not near genes chr2R_4_12360001 chr2R_12360001 RAL-228 333 chr2R 12481147 12481170 chr2R 12482942 12482957 roo 8 1792 1.0 4.0 2.5 2.3 1810 chr2R 12481147 exon Dh44-R2 + chr2R 12482052 intron Dh44-R2 + chr2R 12482957 intron Dh44-R2 + chr2R_8_12480001 chr2R_12480001 RAL-228 334 chr2R 12501699 12501725 chr2R 12503849 12503887 Rt1c 4 2156 2.5 4.0 3.2 1.0 2188 chr2R 12501699 intron fdl - chr2R 12502793 intron fdl - chr2R 12503887 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-228 335 chr2R 12702315 12702338 chr2R 12702396 12702419 4 81 0.5 0.5 0.5 2.7 104 chr2R 12702315 intergenic not near genes chr2R 12702367 intergenic not near genes chr2R 12702419 intergenic not near genes chr2R_4_12700001 chr2R_12700001 RAL-228 336 chr2R 12726323 12726353 chr2R 12726415 12726445 7 92 4.0 1.5 2.8 1.8 122 chr2R 12726323 intron CG42663 + chr2R 12726384 intron CG42663 + chr2R 12726445 intron CG42663 + chr2R_7_12725001 chr2R_12725001 RAL-228 337 chr2R 12789300 12789327 chr2R 12797658 12797690 roo 4 8358 0.0 2.0 1.0 2.0 8390 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793495 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-228 338 chr2R 12808316 12808343 chr2R 12808411 12808437 7 93 2.5 1.5 2.0 2.3 121 chr2R 12808316 intergenic not near genes chr2R 12808376 intergenic not near genes chr2R 12808437 intergenic not near genes chr2R_7_12805001 chr2R_12805001 RAL-228 339 chr2R 12819457 12819478 chr2R 12824526 12824546 jockey 4 5069 1.5 6.0 3.8 0.8 5089 chr2R 12819457 intergenic not near genes chr2R 12822002 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-228 340 chr2R 12879234 12879255 chr2R 12879313 12879334 6 79 2.5 2.5 2.5 1.7 100 chr2R 12879234 intron,intron Aats-asp +,Nmda1 - chr2R 12879284 intron,intron Aats-asp +,Nmda1 - chr2R 12879334 intron,intron Aats-asp +,Nmda1 - chr2R_6_12875001 chr2R_12875001 RAL-228 341 chr2R 13136842 13136850 chr2R 13141640 13141648 Doc 4 4797 3.5 3.5 3.5 0.9 4806 chr2R 13136842 exon Cap-G + chr2R 13139245 intron Cap-G + chr2R 13141648 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-228 342 chr2R 13136851 13136870 chr2R 13141637 13141668 Doc 7 4796 2.0 3.5 2.8 1.8 4817 chr2R 13136851 exon Cap-G + chr2R 13139260 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-228 343 chr2R 13223330 13223366 chr2R 13223410 13223445 10 78 1.0 1.0 1.0 5.0 115 chr2R 13223330 intron Dp + chr2R 13223388 intron Dp + chr2R 13223445 intron Dp + chr2R_10_13220001 chr2R_13220001 RAL-228 344 chr2R 13305499 13305509 chr2R 13305581 13305591 4 82 4.5 3.0 3.8 0.8 92 chr2R 13305499 intergenic not near genes chr2R 13305545 intergenic not near genes chr2R 13305591 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-228 345 chr2R 13438865 13438891 chr2R 13440183 13440209 12 1318 8.5 21.0 14.8 0.8 1344 chr2R 13438865 5` UTR CG42321 - chr2R 13439537 3` UTR cnn - chr2R 13440209 exon cnn - chr2R_12_13435001 chr2R_13435001 RAL-228 346 chr2R 13464483 13464500 chr2R 13464614 13464631 4 131 3.5 2.5 3.0 1.0 148 chr2R 13464483 intron arr - chr2R 13464557 intron arr - chr2R 13464631 intron arr - chr2R_4_13460001 chr2R_13460001 RAL-228 347 chr2R 13694628 13694641 chr2R 13694705 13694718 4 76 2.5 1.0 1.8 1.4 90 chr2R 13694628 intron fas + chr2R 13694673 intron fas + chr2R 13694718 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-228 348 chr2R 13768987 13769010 chr2R 13769086 13769109 6 99 0.5 3.0 1.8 2.1 122 chr2R 13768987 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-228 349 chr2R 13793148 13793161 chr2R 13793223 13793237 5 76 5.5 1.0 3.2 1.2 89 chr2R 13793148 intergenic not near genes chr2R 13793192 intergenic not near genes chr2R 13793237 intergenic not near genes chr2R_5_13790001 chr2R_13790001 RAL-228 350 chr2R 13805375 13805406 chr2R 13807781 13807811 6 2405 6.5 17.0 11.8 0.5 2436 chr2R 13805375 intergenic Cpr50Cb +,stj + chr2R 13806593 5` UTR stj + chr2R 13807811 exon stj + chr2R_6_13805001 chr2R_13805001 RAL-228 351 chr2R 13922633 13922650 chr2R 13922709 13922726 4 76 2.5 2.5 2.5 1.1 93 chr2R 13922633 intron shot - chr2R 13922680 intron shot - chr2R 13922726 intron shot - chr2R_4_13920001 chr2R_13920001 RAL-228 352 chr2R 14294836 14294860 chr2R 14294916 14294940 12 80 2.0 3.0 2.5 3.4 104 chr2R 14294836 intron Ih + chr2R 14294888 intron Ih + chr2R 14294940 intron Ih + chr2R_12_14290001 chr2R_14290001 RAL-228 353 chr2R 14375470 14375506 chr2R 14375553 14375589 7 80 1.0 3.0 2.0 2.3 119 chr2R 14375470 intergenic Obp50e -,CG30075 + chr2R 14375530 intergenic Obp50e -,CG30075 + chr2R 14375589 intergenic Obp50e -,CG30075 + chr2R_7_14375001 chr2R_14375001 RAL-228 354 chr2R 14393866 14393899 chr2R 14393950 14393984 8 82 2.5 1.5 2.0 2.7 118 chr2R 14393866 intergenic not near genes chr2R 14393925 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_8_14390001 chr2R_14390001 RAL-228 355 chr2R 14467316 14467324 chr2R 14476465 14476482 roo 5 9156 1.0 4.0 2.5 1.4 9166 chr2R 14467316 intergenic not near genes chr2R 14471899 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-228 356 chr2R 14536220 14536235 chr2R 14536335 14536349 4 115 0.0 2.5 1.2 1.8 129 chr2R 14536220 intron ttv + chr2R 14536284 intron ttv + chr2R 14536349 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-228 357 chr2R 14556171 14556190 chr2R 14556245 14556269 7 78 1.5 0.5 1.0 3.5 98 chr2R 14556171 intron ttv + chr2R 14556220 intron ttv + chr2R 14556269 intron ttv + chr2R_7_14555001 chr2R_14555001 RAL-228 358 chr2R 14565560 14565574 chr2R 14565637 14565651 5 77 2.0 1.0 1.5 2.0 91 chr2R 14565560 intron ttv + chr2R 14565606 intron ttv + chr2R 14565651 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-228 359 chr2R 14816104 14816138 chr2R 14816200 14816210 7 91 2.0 3.5 2.8 1.8 106 chr2R 14816104 intergenic not near genes chr2R 14816157 intergenic not near genes chr2R 14816210 intergenic not near genes chr2R_7_14815001 chr2R_14815001 RAL-228 360 chr2R 14911703 14911720 chr2R 14911826 14911843 5 123 3.5 2.0 2.8 1.3 140 chr2R 14911703 intron CG10249 - chr2R 14911773 intron CG10249 - chr2R 14911843 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-228 361 chr2R 14922157 14922161 chr2R 14922220 14922237 4 73 6.0 2.0 4.0 0.8 80 chr2R 14922157 intron CG10249 - chr2R 14922197 intron CG10249 - chr2R 14922237 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-228 362 chr2R 14979779 14979791 chr2R 14979854 14979867 5 76 2.0 1.0 1.5 2.0 88 chr2R 14979779 3` UTR ckn + chr2R 14979823 3` UTR ckn + chr2R 14979867 3` UTR ckn + chr2R_5_14975001 chr2R_14975001 RAL-228 363 chr2R 15084978 15085001 chr2R 15092027 15092050 297 4 7049 4.0 0.0 2.0 1.3 7072 chr2R 15084978 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-228 364 chr2R 15105193 15105201 chr2R 15105284 15105293 7 92 4.0 4.5 4.2 1.3 100 chr2R 15105193 intergenic not near genes chr2R 15105243 intergenic not near genes chr2R 15105293 intergenic not near genes chr2R_7_15105001 chr2R_15105001 RAL-228 365 chr2R 15119326 15119351 chr2R 15127806 15127832 Tirant 6 8480 2.5 3.5 3.0 1.5 8506 chr2R 15119326 intron chn + chr2R 15123579 intron chn + chr2R 15127832 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-228 366 chr2R 15133487 15133513 chr2R 15133566 15133589 5 78 2.0 2.0 2.0 1.7 102 chr2R 15133487 intron chn + chr2R 15133538 intron chn + chr2R 15133589 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-228 367 chr2R 15137973 15137986 chr2R 15138053 15138066 5 80 2.5 0.0 1.2 2.3 93 chr2R 15137973 intron chn + chr2R 15138020 intron chn + chr2R 15138066 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-228 368 chr2R 15375354 15375361 chr2R 15376171 15376178 4 817 0.0 2.5 1.2 1.8 824 chr2R 15375354 intergenic not near genes chr2R 15375766 intergenic not near genes chr2R 15376178 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-228 369 chr2R 15697894 15697914 chr2R 15697975 15697992 4 80 1.5 0.0 0.8 2.2 98 chr2R 15697894 exon CG33462 + chr2R 15697943 3` UTR CG33462 + chr2R 15697992 3` UTR CG33462 + chr2R_4_15695001 chr2R_15695001 RAL-228 370 chr2R 15787761 15787791 chr2R 15787837 15787858 5 74 3.5 2.5 3.0 1.2 97 chr2R 15787761 intron Zasp52 - chr2R 15787810 intron Zasp52 - chr2R 15787858 intron Zasp52 - chr2R_5_15785001 chr2R_15785001 RAL-228 371 chr2R 15833522 15833554 chr2R 15833608 15833627 7 84 3.5 3.0 3.2 1.7 105 chr2R 15833522 intron,intron tun +,Poxn - chr2R 15833574 intron,intron tun +,Poxn - chr2R 15833627 intron,intron tun +,Poxn - chr2R_7_15830001 chr2R_15830001 RAL-228 372 chr2R 16245417 16245429 chr2R 16245511 16245523 5 94 0.0 0.0 0.0 5.0 106 chr2R 16245417 intron CngA - chr2R 16245470 intron CngA - chr2R 16245523 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-228 373 chr2R 16289608 16289624 chr2R 16289702 16289718 4 94 1.5 0.5 1.0 2.0 110 chr2R 16289608 intron,exon CR43730 -,JhI-26 + chr2R 16289663 intron,intron CR43730 -,JhI-26 + chr2R 16289718 intron,intron CR43730 -,JhI-26 + chr2R_4_16285001 chr2R_16285001 RAL-228 374 chr2R 16380125 16380149 chr2R 16380223 16380247 7 98 3.0 0.5 1.8 2.5 122 chr2R 16380125 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380186 3` UTR CR45317 - chr2R 16380247 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_7_16380001 chr2R_16380001 RAL-228 375 chr2R 16484023 16484035 chr2R 16484106 16484118 7 83 4.0 2.0 3.0 1.8 95 chr2R 16484023 intergenic not near genes chr2R 16484070 intergenic not near genes chr2R 16484118 intergenic not near genes chr2R_7_16480001 chr2R_16480001 RAL-228 376 chr2R 16511803 16511832 chr2R 16511965 16511992 6 160 1.0 0.0 0.5 4.0 189 chr2R 16511803 intron Sema-2a + chr2R 16511898 intron Sema-2a + chr2R 16511992 intron Sema-2a + chr2R_6_16510001 chr2R_16510001 RAL-228 377 chr2R 17120282 17120299 chr2R 17120380 17120396 7 97 7.0 2.0 4.5 1.3 114 chr2R 17120282 5` UTR Amy-p - chr2R 17120339 intergenic Amy-p - chr2R 17120396 intergenic Amy-p - chr2R_7_17120001 chr2R_17120001 RAL-228 378 chr2R 17236507 17236530 chr2R 17241711 17241734 copia 5 5204 1.0 2.0 1.5 2.0 5227 chr2R 17236507 intron mbl + chr2R 17239120 intron mbl + chr2R 17241734 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-228 379 chr2R 17784026 17784053 chr2R 17784267 17784294 pogo 11 240 4.5 4.0 4.2 2.1 268 chr2R 17784026 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784294 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-228 380 chr2R 17966153 17966171 chr2R 17966234 17966237 4 76 0.0 3.0 1.5 1.6 84 chr2R 17966153 intergenic not near genes chr2R 17966195 intergenic not near genes chr2R 17966237 intergenic not near genes chr2R_4_17965001 chr2R_17965001 RAL-228 381 chr2R 17970253 17970257 chr2R 17970382 17970386 4 129 8.0 6.5 7.2 0.5 133 chr2R 17970253 intergenic not near genes chr2R 17970320 intergenic not near genes chr2R 17970386 intergenic not near genes chr2R_4_17970001 chr2R_17970001 RAL-228 382 chr2R 18393707 18393719 chr2R 18394285 18394299 6 580 6.5 5.0 5.8 0.9 592 chr2R 18393707 5` UTR Idgf5 + chr2R 18394003 exon Idgf5 + chr2R 18394299 exon Idgf5 + chr2R_6_18390001 chr2R_18390001 RAL-228 383 chr2R 18575802 18575830 chr2R 18581989 18582014 3S18 8 6186 0.5 3.0 1.8 2.9 6212 chr2R 18575802 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582014 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 RAL-228 384 chr2R 18590873 18590896 chr2R 18600024 18600048 roo 4 9151 1.5 1.5 1.5 1.6 9175 chr2R 18590873 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600048 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-228 385 chr2R 18604416 18604447 chr2R 18604502 18604533 8 85 2.0 2.0 2.0 2.7 117 chr2R 18604416 intron GEFmeso - chr2R 18604474 intron GEFmeso - chr2R 18604533 intron GEFmeso - chr2R_8_18600001 chr2R_18600001 RAL-228 386 chr2R 18871646 18871676 chr2R 18871731 18871761 5 85 4.0 0.0 2.0 1.7 115 chr2R 18871646 intergenic not near genes chr2R 18871704 intergenic not near genes chr2R 18871761 intergenic not near genes chr2R_5_18870001 chr2R_18870001 RAL-228 387 chr2R 18924003 18924040 chr2R 18924112 18924128 17 102 3.0 3.5 3.2 4.0 125 chr2R 18924003 intron sano + chr2R 18924066 intron sano + chr2R 18924128 intron sano + chr2R_17_18920001 chr2R_18920001 RAL-228 388 chr2R 18953159 18953164 chr2R 18953244 18953251 5 86 6.5 2.0 4.2 1.0 92 chr2R 18953159 intron sano + chr2R 18953205 intron sano + chr2R 18953251 intron sano + chr2R_5_18950001 chr2R_18950001 RAL-228 389 chr2R 18955122 18955158 chr2R 18955213 18955250 15 87 3.5 3.0 3.2 3.6 128 chr2R 18955122 5` UTR sano + chr2R 18955186 5` UTR sano + chr2R 18955250 5` UTR sano + chr2R_15_18955001 chr2R_18955001 RAL-228 390 chr2R 19012938 19012969 chr2R 19013031 19013063 10 94 0.5 1.0 0.8 5.6 125 chr2R 19012938 intergenic not near genes chr2R 19013000 intergenic not near genes chr2R 19013063 intergenic not near genes chr2R_10_19010001 chr2R_19010001 RAL-228 391 chr2R 19149173 19149204 chr2R 19149281 19149312 7 108 0.0 1.5 0.8 3.9 139 chr2R 19149173 intron ena + chr2R 19149242 intron ena + chr2R 19149312 intron ena + chr2R_7_19145001 chr2R_19145001 RAL-228 392 chr2R 19183352 19183372 chr2R 19183427 19183448 11 75 2.5 3.0 2.8 2.9 96 chr2R 19183352 intron hppy + chr2R 19183400 intron hppy + chr2R 19183448 intron hppy + chr2R_11_19180001 chr2R_19180001 RAL-228 393 chr2R 19234842 19234863 chr2R 19234924 19234945 6 82 3.5 1.5 2.5 1.7 103 chr2R 19234842 intron cora + chr2R 19234894 intron cora + chr2R 19234945 intron cora + chr2R_6_19230001 chr2R_19230001 RAL-228 394 chr2R 19776603 19776621 chr2R 19779924 19779943 jockey 5 3322 0.0 2.5 1.2 2.3 3340 chr2R 19776603 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779943 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-228 395 chr2R 19957438 19957463 chr2R 19962631 19962665 copia 5 5195 1.0 1.0 1.0 2.5 5227 chr2R 19957438 intergenic CG44623 + chr2R 19960052 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-228 396 chr2R 20008182 20008209 chr2R 20008271 20008298 8 89 1.5 2.0 1.8 2.9 116 chr2R 20008182 intergenic not near genes chr2R 20008240 intergenic not near genes chr2R 20008298 intergenic not near genes chr2R_8_20005001 chr2R_20005001 RAL-228 397 chr2R 20016034 20016069 chr2R 20016119 20016154 6 85 0.5 2.5 1.5 2.4 120 chr2R 20016034 intergenic CR44630 - chr2R 20016094 intergenic CR44630 - chr2R 20016154 intergenic CR44630 - chr2R_6_20015001 chr2R_20015001 RAL-228 398 chr2R 20069235 20069255 chr2R 20071874 20071893 opus 4 2639 2.0 1.5 1.8 1.4 2658 chr2R 20069235 intergenic not near genes chr2R 20070564 intergenic not near genes chr2R 20071893 intergenic not near genes chr2R_4_20070001 chr2R_20070001 RAL-228 399 chr2R 20320716 20320738 chr2R 20320792 20320814 10 76 3.0 6.0 4.5 1.8 98 chr2R 20320716 intron CG8920 + chr2R 20320765 intron CG8920 + chr2R 20320814 intron CG8920 + chr2R_10_20320001 chr2R_20320001 RAL-228 400 chr2R 20419388 20419408 chr2R 20419476 20419501 7 92 2.0 5.5 3.8 1.5 113 chr2R 20419388 intergenic not near genes chr2R 20419444 intergenic not near genes chr2R 20419501 intergenic not near genes chr2R_7_20415001 chr2R_20415001 RAL-228 401 chr2R 20441049 20441072 chr2R 20441137 20441159 5 88 1.0 4.0 2.5 1.4 110 chr2R 20441049 intron CG12484 + chr2R 20441104 intron CG12484 + chr2R 20441159 intron CG12484 + chr2R_5_20440001 chr2R_20440001 RAL-228 402 chr2R 20497848 20497879 chr2R 20497999 20498025 12 150 1.5 2.0 1.8 4.3 177 chr2R 20497848 intergenic not near genes chr2R 20497936 intergenic not near genes chr2R 20498025 intergenic not near genes chr2R_12_20495001 chr2R_20495001 RAL-228 403 chr2R 20523038 20523071 chr2R 20523149 20523181 14 109 1.5 4.5 3.0 3.5 143 chr2R 20523038 intergenic not near genes chr2R 20523110 intergenic not near genes chr2R 20523181 intergenic not near genes chr2R_14_20520001 chr2R_20520001 RAL-228 404 chr2R 20601728 20601754 chr2R 20601808 20601839 7 84 0.0 0.5 0.2 5.8 111 chr2R 20601728 intron bl + chr2R 20601784 intron bl + chr2R 20601839 intron bl + chr2R_7_20600001 chr2R_20600001 RAL-228 405 chr2R 20604196 20604202 chr2R 20604280 20604286 4 84 8.5 3.0 5.8 0.6 90 chr2R 20604196 intron bl + chr2R 20604241 intron bl + chr2R 20604286 intron bl + chr2R_4_20600001 chr2R_20600001 RAL-228 406 chr2R 20690759 20690787 chr2R 20690833 20690863 12 73 2.5 3.0 2.8 3.2 104 chr2R 20690759 intergenic not near genes chr2R 20690811 intergenic not near genes chr2R 20690863 intergenic not near genes chr2R_12_20690001 chr2R_20690001 RAL-228 407 chr2R 20825626 20825648 chr2R 20825720 20825743 7 94 2.0 3.0 2.5 2.0 117 chr2R 20825626 intron insc - chr2R 20825684 intron insc - chr2R 20825743 intron insc - chr2R_7_20825001 chr2R_20825001 RAL-228 408 chr2R 20834807 20834824 chr2R 20834921 20834939 10 115 2.0 1.0 1.5 4.0 132 chr2R 20834807 intron,intron insc -,sktl - chr2R 20834873 intron,intron insc -,sktl - chr2R 20834939 intron,intron insc -,sktl - chr2R_10_20830001 chr2R_20830001 RAL-228 409 chr2R 20962905 20962931 chr2R 20963003 20963029 8 98 2.0 2.5 2.2 2.5 124 chr2R 20962905 intergenic not near genes chr2R 20962967 intergenic not near genes chr2R 20963029 intergenic not near genes chr2R_8_20960001 chr2R_20960001 RAL-228 410 chr2R 21188217 21188235 chr2R 21188297 21188315 5 80 3.0 0.5 1.8 1.8 98 chr2R 21188217 exon tud + chr2R 21188266 intron tud + chr2R 21188315 intron tud + chr2R_5_21185001 chr2R_21185001 RAL-228 411 chr2R 21390970 21390977 chr2R 21391041 21391070 5 87 5.5 4.5 5.0 0.8 100 chr2R 21390970 exon Acox57D-d + chr2R 21391020 exon Acox57D-d + chr2R 21391070 intron Acox57D-d + chr2R_5_21390001 chr2R_21390001 RAL-228 412 chr2R 21493402 21493434 chr2R 21493490 21493523 11 84 3.0 4.5 3.8 2.3 121 chr2R 21493402 intron Fkbp14 - chr2R 21493462 intron Fkbp14 - chr2R 21493523 intron Fkbp14 - chr2R_11_21490001 chr2R_21490001 RAL-228 413 chr2R 21546786 21546821 chr2R 21546867 21546900 13 74 2.5 2.0 2.2 4.1 114 chr2R 21546786 intron Egfr + chr2R 21546843 intron Egfr + chr2R 21546900 intron Egfr + chr2R_13_21545001 chr2R_21545001 RAL-228 414 chr2R 21585228 21585238 chr2R 21585307 21585316 4 78 1.5 1.5 1.5 1.6 88 chr2R 21585228 3` UTR CG30222 + chr2R 21585272 3` UTR CG30222 + chr2R 21585316 3` UTR CG30222 + chr2R_4_21585001 chr2R_21585001 RAL-228 415 chr2R 21700168 21700182 chr2R 21700254 21700267 4 85 3.5 2.5 3.0 1.0 99 chr2R 21700168 intron HmgZ - chr2R 21700218 intron HmgZ - chr2R 21700267 intron HmgZ - chr2R_4_21700001 chr2R_21700001 RAL-228 416 chr2R 21809526 21809558 chr2R 21817766 21817797 roo 6 8240 0.5 1.5 1.0 3.0 8271 chr2R 21809526 intergenic not near genes chr2R 21813662 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_6_21810001 chr2R_21810001 RAL-228 417 chr2R 21876158 21876192 chr2R 21876276 21876310 9 115 0.5 3.5 2.0 3.0 152 chr2R 21876158 intron Fili + chr2R 21876234 intron Fili + chr2R 21876310 intron Fili + chr2R_9_21875001 chr2R_21875001 RAL-228 418 chr2R 21878801 21878822 chr2R 21878907 21878929 4 106 0.5 2.0 1.2 1.8 128 chr2R 21878801 intron Fili + chr2R 21878865 intron Fili + chr2R 21878929 intron Fili + chr2R_4_21875001 chr2R_21875001 RAL-228 419 chr2R 21906277 21906290 chr2R 21906378 21906391 4 101 0.5 1.0 0.8 2.2 114 chr2R 21906277 intron Fili + chr2R 21906334 intron Fili + chr2R 21906391 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-228 420 chr2R 21956296 21956327 chr2R 21956375 21956406 7 79 1.5 1.5 1.5 2.8 110 chr2R 21956296 intergenic not near genes chr2R 21956351 intergenic not near genes chr2R 21956406 intergenic not near genes chr2R_7_21955001 chr2R_21955001 RAL-228 421 chr2R 22072692 22072712 chr2R 22072777 22072797 13 85 1.5 4.0 2.8 3.4 105 chr2R 22072692 intron CG11474 - chr2R 22072744 intron CG11474 - chr2R 22072797 exon CG11474 - chr2R_13_22070001 chr2R_22070001 RAL-228 422 chr2R 22177434 22177466 chr2R 22179605 22179637 13 2171 18.0 31.0 24.5 0.5 2203 chr2R 22177434 3` UTR CG11170 - chr2R 22178536 intron CG11170 - chr2R 22179637 intron CG11170 - chr2R_13_22175001 chr2R_22175001 RAL-228 423 chr2R 22189447 22189468 chr2R 22189574 22189595 6 127 3.0 0.5 1.8 2.1 148 chr2R 22189447 3` UTR Vps35 + chr2R 22189521 3` UTR Vps35 + chr2R 22189595 3` UTR Vps35 + chr2R_6_22185001 chr2R_22185001 RAL-228 424 chr2R 22248849 22248874 chr2R 22248920 22248930 6 72 1.5 1.5 1.5 2.4 81 chr2R 22248849 intron dve + chr2R 22248890 intron dve + chr2R 22248930 intron dve + chr2R_6_22245001 chr2R_22245001 RAL-228 425 chr2R 22349690 22349727 chr2R 22351474 22351500 jockey 7 1782 2.0 1.5 1.8 2.5 1810 chr2R 22349690 intron Liprin-gamma - chr2R 22350595 intron Liprin-gamma - chr2R 22351500 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-228 426 chr2R 22499853 22499885 chr2R 22499929 22499961 9 75 0.0 5.5 2.8 2.4 108 chr2R 22499853 intron px - chr2R 22499907 intron px - chr2R 22499961 intron px - chr2R_9_22495001 chr2R_22495001 RAL-228 427 chr2R 22575661 22575694 chr2R 22575740 22575773 9 77 0.0 3.5 1.8 3.2 112 chr2R 22575661 intron dnr1 - chr2R 22575717 intron dnr1 - chr2R 22575773 intron dnr1 - chr2R_9_22575001 chr2R_22575001 RAL-228 428 chr2R 22588148 22588157 chr2R 22588243 22588251 4 94 5.5 8.5 7.0 0.5 103 chr2R 22588148 intron dnr1 - chr2R 22588200 intron dnr1 - chr2R 22588251 intron dnr1 - chr2R_4_22585001 chr2R_22585001 RAL-228 429 chr2R 22756558 22756577 chr2R 22756635 22756654 9 77 3.5 2.0 2.8 2.4 96 chr2R 22756558 intron,intron CG42260 -,CR30267 + chr2R 22756606 intron,intron CG42260 -,CR30267 + chr2R 22756654 intron,intron CG42260 -,CR30267 + chr2R_9_22755001 chr2R_22755001 RAL-228 430 chr2R 22907401 22907436 chr2R 22907493 22907529 13 91 3.0 1.0 2.0 4.3 128 chr2R 22907401 intron nahoda + chr2R 22907465 intron nahoda + chr2R 22907529 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-228 431 chr2R 22945052 22945078 chr2R 22945166 22945192 10 114 1.5 0.0 0.8 5.6 140 chr2R 22945052 exon CG42694 + chr2R 22945122 3` UTR CG42694 + chr2R 22945192 intergenic CG42694 + chr2R_10_22945001 chr2R_22945001 RAL-228 432 chr2R 23045147 23045175 chr2R 23045246 23045271 13 97 2.0 0.5 1.2 5.9 124 chr2R 23045147 intron twi + chr2R 23045209 intron twi + chr2R 23045271 intron twi + chr2R_13_23045001 chr2R_23045001 RAL-228 433 chr2R 23175041 23175063 chr2R 23175118 23175139 11 74 3.0 3.0 3.0 2.8 98 chr2R 23175041 intron CG34371 - chr2R 23175090 intron CG34371 - chr2R 23175139 intron CG34371 - chr2R_11_23175001 chr2R_23175001 RAL-228 434 chr2R 23186105 23186117 chr2R 23186250 23186262 5 145 0.0 1.0 0.5 3.3 157 chr2R 23186105 intron CG34371 - chr2R 23186184 intron CG34371 - chr2R 23186262 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-228 435 chr2R 23186580 23186599 chr2R 23186658 23186677 7 78 2.0 4.5 3.2 1.7 97 chr2R 23186580 intron CG34371 - chr2R 23186628 intron CG34371 - chr2R 23186677 intron CG34371 - chr2R_7_23185001 chr2R_23185001 RAL-228 436 chr2R 23275650 23275684 chr2R 23275742 23275776 5 92 1.0 1.5 1.2 2.3 126 chr2R 23275650 intergenic ord - chr2R 23275713 intergenic ord - chr2R 23275776 intergenic ord - chr2R_5_23275001 chr2R_23275001 RAL-228 437 chr2R 23356274 23356307 chr2R 23356361 23356389 11 88 2.5 2.0 2.2 3.4 115 chr2R 23356274 3` UTR Rpi + chr2R 23356332 3` UTR Rpi + chr2R 23356389 3` UTR,3` UTR Rpi +,CG3500 - chr2R_11_23355001 chr2R_23355001 RAL-228 438 chr2R 23421084 23421119 chr2R 23421163 23421194 7 78 0.5 1.0 0.8 3.9 110 chr2R 23421084 intergenic CG9815 - chr2R 23421139 intergenic CG9815 - chr2R 23421194 intergenic CG9815 - chr2R_7_23420001 chr2R_23420001 RAL-228 439 chr2R 23529574 23529606 chr2R 23537149 23537181 412 4 7562 5.0 2.5 3.8 0.8 7607 chr2R 23529574 intron bw - chr2R 23533378 intron bw - chr2R 23537181 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-228 440 chr2R 23865827 23865855 chr2R 23865909 23865937 6 82 3.5 0.0 1.8 2.1 110 chr2R 23865827 intron CG5569 + chr2R 23865882 intron CG5569 + chr2R 23865937 intron CG5569 + chr2R_6_23865001 chr2R_23865001 RAL-228 441 chr2R 24031380 24031409 chr2R 24031464 24031493 10 84 1.5 1.0 1.2 4.5 113 chr2R 24031380 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_10_24030001 chr2R_24030001 RAL-228 442 chr2R 24147067 24147088 chr2R 24154644 24154666 412 5 7577 3.0 3.5 3.2 1.2 7599 chr2R 24147067 intron Dat + chr2R 24150866 intron Dat + chr2R 24154666 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-228 443 chr2R 24177234 24177265 chr2R 24184719 24184750 412 5 7485 2.0 1.0 1.5 2.0 7516 chr2R 24177234 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184750 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-228 444 chr2R 24287133 24287162 chr2R 24287210 24287239 4 77 1.5 1.0 1.2 1.8 106 chr2R 24287133 intron nvy + chr2R 24287186 intron nvy + chr2R 24287239 intron nvy + chr2R_4_24285001 chr2R_24285001 RAL-228 445 chr2R 24303889 24303918 chr2R 24303973 24304001 6 84 2.5 0.5 1.5 2.4 112 chr2R 24303889 intergenic not near genes chr2R 24303945 intergenic not near genes chr2R 24304001 intergenic not near genes chr2R_6_24300001 chr2R_24300001 RAL-228 446 chr2R 24351416 24351439 chr2R 24351497 24351520 5 81 2.0 0.5 1.2 2.3 104 chr2R 24351416 intron bs + chr2R 24351468 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_5_24350001 chr2R_24350001 RAL-228 447 chr2R 24353430 24353462 chr2R 24361792 24361824 roo 7 8362 1.0 2.0 1.5 2.8 8394 chr2R 24353430 intron,intron bs +,CR44811 - chr2R 24357627 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-228 448 chr2R 24383825 24383857 chr2R 24383906 24383938 5 81 0.5 1.0 0.8 2.8 113 chr2R 24383825 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_5_24380001 chr2R_24380001 RAL-228 449 chr2R 24414766 24414790 chr2R 24421626 24421650 7 6860 25.0 23.0 24.0 0.3 6884 chr2R 24414766 3` UTR,5` UTR CG45068 +,CG45069 + chr2R 24418208 intron prom - chr2R 24421650 intron prom - chr2R_7_24415001 chr2R_24415001 RAL-228 450 chr2R 24458374 24458403 chr2R 24458520 24458548 6 146 1.0 2.0 1.5 2.4 174 chr2R 24458374 intron CG13579 + chr2R 24458461 intron CG13579 + chr2R 24458548 intron CG13579 + chr2R_6_24455001 chr2R_24455001 RAL-228 451 chr2R 24590113 24590138 chr2R 24590204 24590230 8 89 2.5 5.0 3.8 1.7 117 chr2R 24590113 intron pio + chr2R 24590172 intron pio + chr2R 24590230 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-228 452 chr2R 24633995 24634012 chr2R 24634075 24634082 5 77 4.0 3.0 3.5 1.1 87 chr2R 24633995 intron CG13594 - chr2R 24634038 intron CG13594 - chr2R 24634082 intron CG13594 - chr2R_5_24630001 chr2R_24630001 RAL-228 453 chr2R 24682082 24682105 chr2R 24682170 24682194 5 89 1.0 1.0 1.0 2.5 112 chr2R 24682082 intron Mmp1 - chr2R 24682138 intron Mmp1 - chr2R 24682194 intron Mmp1 - chr2R_5_24680001 chr2R_24680001 RAL-228 454 chr2R 24727887 24727917 chr2R 24735395 24735425 mdg1 15 7507 2.0 4.0 3.0 3.8 7538 chr2R 24727887 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_15_24730001 chr2R_24730001 RAL-228 455 chr2R 24763609 24763643 chr2R 24765585 24765619 G2 15 1976 3.0 4.5 3.8 3.1 2010 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_15_24760001 chr2R_24760001 RAL-228 456 chr2R 24768004 24768023 chr2R 24768080 24768108 4 79 2.0 0.5 1.2 1.8 104 chr2R 24768004 5` UTR GstE12 - chr2R 24768056 5` UTR GstE12 - chr2R 24768108 5` UTR GstE12 - chr2R_4_24765001 chr2R_24765001 RAL-228 457 chr2R 24848657 24848688 chr2R 24848741 24848772 7 84 0.5 1.0 0.8 3.9 115 chr2R 24848657 intergenic CG3650 + chr2R 24848714 intergenic CG3650 + chr2R 24848772 intergenic CG3650 + chr2R_7_24845001 chr2R_24845001 RAL-228 458 chr2R 25101279 25101308 chr2R 25101381 25101410 10 102 1.0 3.0 2.0 3.3 131 chr2R 25101279 intron lov - chr2R 25101344 intron lov - chr2R 25101410 intron lov - chr2R_10_25100001 chr2R_25100001 RAL-228 459 chr2R 25102521 25102551 chr2R 25102690 25102720 6 168 1.0 2.0 1.5 2.4 199 chr2R 25102521 intron lov - chr2R 25102620 intron lov - chr2R 25102720 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-228 460 chr2R 25104777 25104807 chr2R 25104902 25104932 7 125 1.0 1.5 1.2 3.2 155 chr2R 25104777 intron lov - chr2R 25104854 intron lov - chr2R 25104932 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-228 461 chr2R 25175385 25175418 chr2R 25175468 25175501 5 83 1.0 3.5 2.2 1.6 116 chr2R 25175385 3` UTR Peb - chr2R 25175443 3` UTR Peb - chr2R 25175501 exon Peb - chr2R_5_25175001 chr2R_25175001 RAL-228 462 chr3L 27178 27188 chr3L 27337 27345 4 158 2.0 0.5 1.2 1.8 167 chr3L 27178 intergenic not near genes chr3L 27262 intergenic not near genes chr3L 27345 intergenic not near genes chr3L_4_25001 chr3L_25001 RAL-228 463 chr3L 110210 110229 chr3L 119377 119394 roo 5 9167 0.0 1.5 0.8 2.8 9184 chr3L 110210 intergenic not near genes chr3L 114802 intergenic not near genes chr3L 119394 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-228 464 chr3L 349448 349474 chr3L 349525 349551 8 77 3.0 2.0 2.5 2.3 103 chr3L 349448 intron Ptpmeg + chr3L 349500 intron Ptpmeg + chr3L 349551 intron Ptpmeg + chr3L_8_345001 chr3L_345001 RAL-228 465 chr3L 402689 402718 chr3L 409741 409771 297 13 7052 5.5 4.0 4.8 2.2 7082 chr3L 402689 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_13_405001 chr3L_405001 RAL-228 466 chr3L 540727 540747 chr3L 540821 540841 6 94 5.5 5.5 5.5 0.9 114 chr3L 540727 intergenic klar -,CG17180 + chr3L 540784 intergenic CG17180 +,klar - chr3L 540841 intergenic CG17180 +,klar - chr3L_6_540001 chr3L_540001 RAL-228 467 chr3L 563970 563999 chr3L 564148 564178 7 178 0.5 1.5 1.0 3.5 208 chr3L 563970 intron hipk + chr3L 564074 intron hipk + chr3L 564178 intron hipk + chr3L_7_560001 chr3L_560001 RAL-228 468 chr3L 642480 642495 chr3L 642571 642586 6 91 1.0 2.0 1.5 2.4 106 chr3L 642480 5` UTR CR43334 + chr3L 642533 5` UTR CR43334 + chr3L 642586 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-228 469 chr3L 643996 644027 chr3L 644073 644103 5 77 1.5 3.5 2.5 1.4 107 chr3L 643996 intergenic CR43334 + chr3L 644050 intergenic CR43334 + chr3L 644103 intergenic CR43334 + chr3L_5_640001 chr3L_640001 RAL-228 470 chr3L 651386 651412 chr3L 651474 651500 4 87 4.0 1.5 2.8 1.1 114 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651443 intergenic CG3402 -,Gale + chr3L 651500 intergenic CG3402 -,Gale + chr3L_4_650001 chr3L_650001 RAL-228 471 chr3L 705914 705922 chr3L 706010 706018 4 96 1.5 1.0 1.2 1.8 104 chr3L 705914 intergenic CG13895 -,CR44514 + chr3L 705966 3` UTR CG13895 - chr3L 706018 3` UTR CG13895 - chr3L_4_705001 chr3L_705001 RAL-228 472 chr3L 789914 789944 chr3L 790399 790423 roo 5 483 0.5 0.5 0.5 3.3 509 chr3L 789914 intergenic not near genes chr3L 790168 intergenic not near genes chr3L 790423 intergenic not near genes chr3L_5_790001 chr3L_790001 RAL-228 473 chr3L 857999 858032 chr3L 866479 866512 Tirant 8 8479 1.5 1.5 1.5 3.2 8513 chr3L 857999 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_8_860001 chr3L_860001 RAL-228 474 chr3L 875657 875693 chr3L 875744 875780 7 85 2.5 1.5 2.0 2.3 123 chr3L 875657 intron CG32479 + chr3L 875718 intron CG32479 + chr3L 875780 intron CG32479 + chr3L_7_875001 chr3L_875001 RAL-228 475 chr3L 925184 925207 chr3L 932610 932633 mdg1 6 7426 1.0 2.0 1.5 2.4 7449 chr3L 925184 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932633 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-228 476 chr3L 933912 933936 chr3L 934015 934039 5 103 1.5 0.5 1.0 2.5 127 chr3L 933912 intron Glut1 + chr3L 933976 intron Glut1 + chr3L 934039 intron Glut1 + chr3L_5_930001 chr3L_930001 RAL-228 477 chr3L 939776 939799 chr3L 940897 940920 jockey 8 1121 3.0 4.0 3.5 1.8 1144 chr3L 939776 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-228 478 chr3L 958313 958345 chr3L 958397 958429 10 84 1.5 1.0 1.2 4.5 116 chr3L 958313 intron Glut1 + chr3L 958371 intron Glut1 + chr3L 958429 intron Glut1 + chr3L_10_955001 chr3L_955001 RAL-228 479 chr3L 1000268 1000300 chr3L 1000350 1000383 11 82 1.5 2.5 2.0 3.7 115 chr3L 1000268 intron trio - chr3L 1000326 intron trio - chr3L 1000383 intron trio - chr3L_11_1000001 chr3L_1000001 RAL-228 480 chr3L 1015038 1015050 chr3L 1015138 1015161 7 109 2.0 3.0 2.5 2.0 123 chr3L 1015038 intron trio - chr3L 1015100 intron trio - chr3L 1015161 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-228 481 chr3L 1095029 1095051 chr3L 1095108 1095115 4 76 0.5 1.0 0.8 2.2 86 chr3L 1095029 intron bab1 - chr3L 1095072 intron bab1 - chr3L 1095115 intron bab1 - chr3L_4_1095001 chr3L_1095001 RAL-228 482 chr3L 1109632 1109667 chr3L 1109720 1109754 10 87 0.5 2.5 1.5 4.0 122 chr3L 1109632 intergenic not near genes chr3L 1109693 intergenic not near genes chr3L 1109754 intergenic not near genes chr3L_10_1105001 chr3L_1105001 RAL-228 483 chr3L 1219609 1219624 chr3L 1227342 1227357 412 6 7732 2.5 8.0 5.2 1.0 7748 chr3L 1219609 intron mwh + chr3L 1223483 intron mwh + chr3L 1227357 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-228 484 chr3L 1290025 1290052 chr3L 1290131 1290158 7 106 0.5 1.5 1.0 3.5 133 chr3L 1290025 exon CG32333 + chr3L 1290092 intron CG32333 + chr3L 1290158 intron CG32333 + chr3L_7_1290001 chr3L_1290001 RAL-228 485 chr3L 1415773 1415807 chr3L 1415855 1415866 10 79 3.0 3.5 3.2 2.4 93 chr3L 1415773 intron Ptp61F - chr3L 1415820 intron Ptp61F - chr3L 1415866 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-228 486 chr3L 1505998 1506019 chr3L 1513595 1513616 17.6 4 7597 3.0 3.5 3.2 1.0 7618 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509807 intron,intron Psa +,cue - chr3L 1513616 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-228 487 chr3L 1848642 1848668 chr3L 1848720 1848746 4 78 1.5 2.0 1.8 1.4 104 chr3L 1848642 intergenic not near genes chr3L 1848694 intergenic not near genes chr3L 1848746 intergenic not near genes chr3L_4_1845001 chr3L_1845001 RAL-228 488 chr3L 2007015 2007046 chr3L 2007380 2007412 5 366 1.0 3.0 2.0 1.7 397 chr3L 2007015 intergenic not near genes chr3L 2007214 intergenic not near genes chr3L 2007412 intergenic not near genes chr3L_5_2005001 chr3L_2005001 RAL-228 489 chr3L 2139211 2139228 chr3L 2139292 2139309 4 80 2.5 1.0 1.8 1.4 98 chr3L 2139211 intron zormin - chr3L 2139260 intron zormin - chr3L 2139309 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-228 490 chr3L 2198593 2198620 chr3L 2198737 2198764 6 144 1.0 1.5 1.2 2.7 171 chr3L 2198593 intergenic not near genes chr3L 2198678 intergenic not near genes chr3L 2198764 intergenic not near genes chr3L_6_2195001 chr3L_2195001 RAL-228 491 chr3L 2302573 2302592 chr3L 2302660 2302679 5 87 2.0 2.5 2.2 1.6 106 chr3L 2302573 intergenic not near genes chr3L 2302626 intergenic not near genes chr3L 2302679 intergenic not near genes chr3L_5_2300001 chr3L_2300001 RAL-228 492 chr3L 2308002 2308024 chr3L 2308108 2308130 6 106 4.0 3.0 3.5 1.3 128 chr3L 2308002 intergenic not near genes chr3L 2308066 intergenic not near genes chr3L 2308130 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-228 493 chr3L 2366093 2366116 chr3L 2366178 2366199 7 84 2.0 1.0 1.5 2.8 106 chr3L 2366093 intergenic not near genes chr3L 2366146 intergenic not near genes chr3L 2366199 intergenic not near genes chr3L_7_2365001 chr3L_2365001 RAL-228 494 chr3L 2479005 2479033 chr3L 2479102 2479130 5 97 3.0 2.5 2.8 1.3 125 chr3L 2479005 intron CG45186 + chr3L 2479068 intron CG45186 + chr3L 2479130 intron CG45186 + chr3L_5_2475001 chr3L_2475001 RAL-228 495 chr3L 2533655 2533674 chr3L 2533737 2533756 5 82 3.0 3.0 3.0 1.2 101 chr3L 2533655 intron Spn - chr3L 2533706 intron Spn - chr3L 2533756 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-228 496 chr3L 2795727 2795749 chr3L 2795850 2795872 5 123 2.0 1.5 1.8 1.8 145 chr3L 2795727 intron CG43444 - chr3L 2795800 intron CG43444 - chr3L 2795872 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-228 497 chr3L 2810600 2810619 chr3L 2810692 2810709 4 92 1.0 1.0 1.0 2.0 109 chr3L 2810600 intron CG43444 - chr3L 2810654 intron CG43444 - chr3L 2810709 intron CG43444 - chr3L_4_2810001 chr3L_2810001 RAL-228 498 chr3L 2854482 2854503 chr3L 2854556 2854578 9 76 2.5 3.5 3.0 2.2 96 chr3L 2854482 intron CG43444 - chr3L 2854530 intron CG43444 - chr3L 2854578 intron CG43444 - chr3L_9_2850001 chr3L_2850001 RAL-228 499 chr3L 2927840 2927870 chr3L 2936117 2936147 Tirant 6 8277 0.0 0.5 0.2 5.0 8307 chr3L 2927840 intron Shab + chr3L 2931994 intron Shab + chr3L 2936147 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-228 500 chr3L 2989553 2989579 chr3L 2989642 2989668 4 88 2.0 0.0 1.0 2.0 115 chr3L 2989553 intergenic not near genes chr3L 2989610 intergenic not near genes chr3L 2989668 intergenic not near genes chr3L_4_2985001 chr3L_2985001 RAL-228 501 chr3L 3061285 3061298 chr3L 3069868 3069881 Tirant 5 8582 5.5 2.5 4.0 1.0 8596 chr3L 3061285 intron CG32486 - chr3L 3065583 intron CG32486 - chr3L 3069881 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-228 502 chr3L 3128198 3128203 chr3L 3128284 3128289 4 85 4.5 1.5 3.0 1.0 91 chr3L 3128198 intergenic prominin-like - chr3L 3128244 intergenic not near genes chr3L 3128289 intergenic not near genes chr3L_4_3125001 chr3L_3125001 RAL-228 503 chr3L 3259626 3259831 chr3L 3259720 3259930 8 96 0.0 1.0 0.5 5.3 304 chr3L 3259626 intron ckd + chr3L 3259778 intron ckd + chr3L 3259930 intron ckd + chr3L_8_3255001 chr3L_3255001 RAL-228 504 chr3L 3281444 3281476 chr3L 3281936 3281972 Doc 10 493 1.0 2.0 1.5 4.0 528 chr3L 3281444 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281972 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-228 505 chr3L 3475080 3475106 chr3L 3475523 3475550 jockey 8 444 2.5 2.0 2.2 2.5 470 chr3L 3475080 intron CG42324 + chr3L 3475315 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-228 506 chr3L 3565942 3565963 chr3L 3566017 3566037 7 75 1.5 1.5 1.5 2.8 95 chr3L 3565942 intron Eip63E + chr3L 3565990 intron Eip63E + chr3L 3566037 intron Eip63E + chr3L_7_3565001 chr3L_3565001 RAL-228 507 chr3L 3601299 3601332 chr3L 3606610 3606643 copia 9 5311 4.0 2.0 3.0 2.2 5344 chr3L 3601299 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_9_3600001 chr3L_3600001 RAL-228 508 chr3L 3665578 3665605 chr3L 3665655 3665682 4 77 1.0 2.0 1.5 1.6 104 chr3L 3665578 intergenic not near genes chr3L 3665630 intergenic not near genes chr3L 3665682 intergenic not near genes chr3L_4_3665001 chr3L_3665001 RAL-228 509 chr3L 3695495 3695513 chr3L 3695573 3695590 5 78 3.0 0.0 1.5 2.0 95 chr3L 3695495 intergenic not near genes chr3L 3695542 intergenic not near genes chr3L 3695590 intergenic not near genes chr3L_5_3695001 chr3L_3695001 RAL-228 510 chr3L 3709460 3709467 chr3L 3709541 3709549 4 82 0.5 1.0 0.8 2.2 89 chr3L 3709460 intergenic CR45675 + chr3L 3709504 intergenic not near genes chr3L 3709549 intergenic not near genes chr3L_4_3705001 chr3L_3705001 RAL-228 511 chr3L 3773275 3773284 chr3L 3773366 3773376 5 91 4.5 6.5 5.5 0.8 101 chr3L 3773275 intron CG32264 - chr3L 3773326 intron CG32264 - chr3L 3773376 intron CG32264 - chr3L_5_3770001 chr3L_3770001 RAL-228 512 chr3L 3815052 3815082 chr3L 3815133 3815163 8 81 1.5 2.0 1.8 2.9 111 chr3L 3815052 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815163 intron,intron Scsalpha +,CR43932 - chr3L_8_3815001 chr3L_3815001 RAL-228 513 chr3L 4009815 4009840 chr3L 4009914 4009943 10 100 1.0 3.0 2.0 3.3 128 chr3L 4009815 intergenic not near genes chr3L 4009879 intergenic not near genes chr3L 4009943 intergenic not near genes chr3L_10_4005001 chr3L_4005001 RAL-228 514 chr3L 4145907 4145941 chr3L 4145991 4146024 6 84 1.0 0.0 0.5 4.0 117 chr3L 4145907 3` UTR CG32260 + chr3L 4145966 3` UTR CG32260 + chr3L 4146024 intergenic CG32260 + chr3L_6_4145001 chr3L_4145001 RAL-228 515 chr3L 4195135 4195170 chr3L 4195239 4195274 7 103 3.5 3.0 3.2 1.7 139 chr3L 4195135 exon CG43367 + chr3L 4195204 intron CG43367 + chr3L 4195274 intron CG43367 + chr3L_7_4195001 chr3L_4195001 RAL-228 516 chr3L 4232295 4232317 chr3L 4232375 4232381 11 77 2.0 3.5 2.8 2.9 86 chr3L 4232295 intron ImpL2 - chr3L 4232338 intron ImpL2 - chr3L 4232381 intron ImpL2 - chr3L_11_4230001 chr3L_4230001 RAL-228 517 chr3L 4232319 4232327 chr3L 4232370 4232406 5 71 0.0 2.5 1.2 2.3 87 chr3L 4232319 intron ImpL2 - chr3L 4232362 intron ImpL2 - chr3L 4232406 intron ImpL2 - chr3L_5_4230001 chr3L_4230001 RAL-228 518 chr3L 4423475 4423508 chr3L 4423569 4423602 10 93 0.5 1.5 1.0 5.0 127 chr3L 4423475 intron CG15020 + chr3L 4423538 intron CG15020 + chr3L 4423602 intron CG15020 + chr3L_10_4420001 chr3L_4420001 RAL-228 519 chr3L 4597213 4597247 chr3L 4597295 4597328 13 81 1.0 2.5 1.8 4.6 115 chr3L 4597213 intron Src64B - chr3L 4597270 intron Src64B - chr3L 4597328 intron Src64B - chr3L_13_4595001 chr3L_4595001 RAL-228 520 chr3L 4654190 4654223 chr3L 4654272 4654305 12 82 4.5 2.0 3.2 2.9 115 chr3L 4654190 intron axo - chr3L 4654248 intron axo - chr3L 4654305 intron axo - chr3L_12_4650001 chr3L_4650001 RAL-228 521 chr3L 4703553 4703574 chr3L 4704047 4704068 5 494 0.5 0.5 0.5 3.3 515 chr3L 4703553 intron,intron RhoGEF64C +,CR43879 + chr3L 4703810 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4704068 intron RhoGEF64C + chr3L_5_4700001 chr3L_4700001 RAL-228 522 chr3L 4710029 4710060 chr3L 4710306 4710337 4 278 2.0 1.0 1.5 1.6 308 chr3L 4710029 intron RhoGEF64C + chr3L 4710183 intron RhoGEF64C + chr3L 4710337 intron RhoGEF64C + chr3L_4_4710001 chr3L_4710001 RAL-228 523 chr3L 4748703 4748731 chr3L 4748794 4748822 4 91 3.0 1.0 2.0 1.3 119 chr3L 4748703 intron RhoGEF64C + chr3L 4748762 intron RhoGEF64C + chr3L 4748822 intron RhoGEF64C + chr3L_4_4745001 chr3L_4745001 RAL-228 524 chr3L 4952547 4952571 chr3L 4952625 4952628 6 74 4.5 2.0 3.2 1.4 81 chr3L 4952547 intron Con - chr3L 4952588 intron Con - chr3L 4952628 intron Con - chr3L_6_4950001 chr3L_4950001 RAL-228 525 chr3L 5034156 5034187 chr3L 5043308 5043315 roo 4 9146 1.5 1.0 1.2 1.8 9159 chr3L 5034156 intron Con - chr3L 5038736 intron Con - chr3L 5043315 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-228 526 chr3L 5161954 5161985 chr3L 5162044 5162074 6 90 1.0 2.0 1.5 2.4 120 chr3L 5161954 intron shep - chr3L 5162014 intron shep - chr3L 5162074 intron shep - chr3L_6_5160001 chr3L_5160001 RAL-228 527 chr3L 5177661 5177673 chr3L 5177758 5177770 4 97 3.0 0.5 1.8 1.4 109 chr3L 5177661 intron shep - chr3L 5177716 intron shep - chr3L 5177770 intron shep - chr3L_4_5175001 chr3L_5175001 RAL-228 528 chr3L 5223421 5223450 chr3L 5223499 5223531 4 74 0.5 1.5 1.0 2.0 110 chr3L 5223421 intron shep - chr3L 5223476 intron shep - chr3L 5223531 intron shep - chr3L_4_5220001 chr3L_5220001 RAL-228 529 chr3L 5250076 5250108 chr3L 5250154 5250186 6 78 0.0 1.0 0.5 4.0 110 chr3L 5250076 intron shep - chr3L 5250131 intron shep - chr3L 5250186 intron shep - chr3L_6_5250001 chr3L_5250001 RAL-228 530 chr3L 5297573 5297601 chr3L 5297688 5297717 12 114 0.0 3.0 1.5 4.8 144 chr3L 5297573 intergenic not near genes chr3L 5297645 intergenic not near genes chr3L 5297717 intergenic not near genes chr3L_12_5295001 chr3L_5295001 RAL-228 531 chr3L 5433828 5433844 chr3L 5434019 5434032 5 189 20.0 20.0 20.0 0.2 204 chr3L 5433828 exon CG34391 + chr3L 5433930 intron CG34391 + chr3L 5434032 intron CG34391 + chr3L_5_5430001 chr3L_5430001 RAL-228 532 chr3L 5701573 5701598 chr3L 5701654 5701679 7 81 2.0 2.5 2.2 2.2 106 chr3L 5701573 intron sif + chr3L 5701626 intron sif + chr3L 5701679 intron sif + chr3L_7_5700001 chr3L_5700001 RAL-228 533 chr3L 5809966 5809989 chr3L 5810029 5810065 11 74 3.0 1.5 2.2 3.4 99 chr3L 5809966 intron S6k - chr3L 5810016 intron S6k - chr3L 5810065 intron S6k - chr3L_11_5810001 chr3L_5810001 RAL-228 534 chr3L 5908078 5908099 chr3L 5908158 5908179 4 80 1.5 0.0 0.8 2.2 101 chr3L 5908078 intron CG13288 + chr3L 5908128 intron CG13288 + chr3L 5908179 intron CG13288 + chr3L_4_5905001 chr3L_5905001 RAL-228 535 chr3L 5910035 5910056 chr3L 5910276 5910297 pogo 5 241 0.5 1.5 1.0 2.5 262 chr3L 5910035 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910297 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-228 536 chr3L 5926317 5926351 chr3L 5926507 5926530 BS 10 188 2.0 4.5 3.2 2.4 213 chr3L 5926317 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926530 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-228 537 chr3L 6022249 6022267 chr3L 6022333 6022350 8 82 2.5 1.0 1.8 2.9 101 chr3L 6022249 intron PVRAP + chr3L 6022300 intron PVRAP + chr3L 6022350 intron PVRAP + chr3L_8_6020001 chr3L_6020001 RAL-228 538 chr3L 6040276 6040298 chr3L 6040356 6040374 4 79 1.0 0.0 0.5 2.7 98 chr3L 6040276 intergenic Jon65Aiv + chr3L 6040325 intergenic Jon65Aiv + chr3L 6040374 intergenic Jon65Aiv + chr3L_4_6040001 chr3L_6040001 RAL-228 539 chr3L 6040376 6040393 chr3L 6042732 6042749 Doc 4 2356 1.0 4.0 2.5 1.1 2373 chr3L 6040376 intergenic Jon65Aiv + chr3L 6041562 intergenic not near genes chr3L 6042749 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-228 540 chr3L 6052653 6052664 chr3L 6052738 6052748 5 85 9.0 11.5 10.2 0.4 95 chr3L 6052653 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052748 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-228 541 chr3L 6220916 6220941 chr3L 6230067 6230093 roo 6 9152 2.5 5.0 3.8 1.2 9177 chr3L 6220916 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230093 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-228 542 chr3L 6318007 6318028 chr3L 6318091 6318111 8 83 0.5 2.5 1.5 3.2 104 chr3L 6318007 intergenic not near genes chr3L 6318059 intergenic not near genes chr3L 6318111 intergenic not near genes chr3L_8_6315001 chr3L_6315001 RAL-228 543 chr3L 6325394 6325422 chr3L 6325536 6325563 4 142 0.5 0.5 0.5 2.7 169 chr3L 6325394 intergenic Or65b + chr3L 6325478 intergenic Or65b + chr3L 6325563 intergenic Or65b + chr3L_4_6325001 chr3L_6325001 RAL-228 544 chr3L 6463225 6463243 chr3L 6463387 6463406 4 162 2.5 1.5 2.0 1.3 181 chr3L 6463225 intron CG42747 + chr3L 6463316 intron CG42747 + chr3L 6463406 intron CG42747 + chr3L_4_6460001 chr3L_6460001 RAL-228 545 chr3L 7175037 7175054 chr3L 7175267 7175284 4 230 2.0 2.0 2.0 1.3 247 chr3L 7175037 intron Dscam2 - chr3L 7175160 intron Dscam2 - chr3L 7175284 intron Dscam2 - chr3L_4_7175001 chr3L_7175001 RAL-228 546 chr3L 7185729 7185755 chr3L 7185909 7185935 4 180 2.0 0.5 1.2 1.8 206 chr3L 7185729 intron Dscam2 - chr3L 7185832 intron Dscam2 - chr3L 7185935 intron Dscam2 - chr3L_4_7185001 chr3L_7185001 RAL-228 547 chr3L 7224564 7224590 chr3L 7224641 7224667 7 77 2.5 2.5 2.5 2.0 103 chr3L 7224564 intergenic not near genes chr3L 7224616 intergenic not near genes chr3L 7224667 intergenic not near genes chr3L_7_7220001 chr3L_7220001 RAL-228 548 chr3L 7244940 7244965 chr3L 7245026 7245054 11 90 1.5 1.0 1.2 5.0 114 chr3L 7244940 exon mei-P22 + chr3L 7244997 exon mei-P22 + chr3L 7245054 exon mei-P22 + chr3L_11_7240001 chr3L_7240001 RAL-228 549 chr3L 7271353 7271383 chr3L 7271440 7271469 7 86 2.5 1.0 1.8 2.5 116 chr3L 7271353 intron unc-13-4A - chr3L 7271411 intron unc-13-4A - chr3L 7271469 intron unc-13-4A - chr3L_7_7270001 chr3L_7270001 RAL-228 550 chr3L 7285449 7285478 chr3L 7285527 7285556 8 76 1.0 2.5 1.8 2.9 107 chr3L 7285449 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285556 intron unc-13-4A - chr3L_8_7285001 chr3L_7285001 RAL-228 551 chr3L 7358297 7358326 chr3L 7359581 7359610 12 1283 20.0 28.0 24.0 0.5 1313 chr3L 7358297 exon pst - chr3L 7358954 exon pst - chr3L 7359610 intron pst - chr3L_12_7355001 chr3L_7355001 RAL-228 552 chr3L 7355716 7355750 chr3L 7363623 7363657 31 7909 44.5 54.0 49.2 0.6 7941 chr3L 7355716 exon CTCF - chr3L 7359686 exon pst - chr3L 7363657 exon Sec63 + chr3L_31_7355001 chr3L_7355001 RAL-228 553 chr3L 7460377 7460399 chr3L 7460461 7460483 5 84 0.0 1.5 0.8 2.8 106 chr3L 7460377 intergenic not near genes chr3L 7460430 intergenic not near genes chr3L 7460483 intergenic not near genes chr3L_5_7460001 chr3L_7460001 RAL-228 554 chr3L 7464856 7464888 chr3L 7464933 7464965 7 76 0.5 1.0 0.8 3.9 109 chr3L 7464856 intergenic not near genes chr3L 7464910 intergenic not near genes chr3L 7464965 intergenic not near genes chr3L_7_7460001 chr3L_7460001 RAL-228 555 chr3L 7505786 7505791 chr3L 7505874 7505880 5 88 16.5 18.5 17.5 0.3 94 chr3L 7505786 exon CG7548 - chr3L 7505833 exon CG7548 - chr3L 7505880 exon CG7548 - chr3L_5_7505001 chr3L_7505001 RAL-228 556 chr3L 7576218 7576244 chr3L 7576305 7576332 8 84 2.0 3.5 2.8 2.1 114 chr3L 7576218 intergenic not near genes chr3L 7576275 intergenic not near genes chr3L 7576332 intergenic not near genes chr3L_8_7575001 chr3L_7575001 RAL-228 557 chr3L 7581636 7581655 chr3L 7581720 7581738 5 83 1.5 5.0 3.2 1.2 102 chr3L 7581636 intergenic not near genes chr3L 7581687 intergenic not near genes chr3L 7581738 intergenic not near genes chr3L_5_7580001 chr3L_7580001 RAL-228 558 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028208 5.0 14.0 9.5 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-228 559 chr3L 7793713 7793740 chr3L 7800765 7800792 297 4 7052 0.0 1.0 0.5 2.7 7079 chr3L 7793713 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800792 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-228 560 chr3L 8080011 8080023 chr3L 8080095 8080106 4 84 2.0 0.5 1.2 1.8 95 chr3L 8080011 intron Ect4 + chr3L 8080058 intron Ect4 + chr3L 8080106 intron Ect4 + chr3L_4_8080001 chr3L_8080001 RAL-228 561 chr3L 8273062 8273089 chr3L 8273161 8273188 7 99 0.5 2.5 1.5 2.8 126 chr3L 8273062 intron Dscam4 + chr3L 8273125 intron Dscam4 + chr3L 8273188 exon Dscam4 + chr3L_7_8270001 chr3L_8270001 RAL-228 562 chr3L 8371742 8371758 chr3L 8371828 8371844 6 86 0.0 1.0 0.5 4.0 102 chr3L 8371742 intergenic not near genes chr3L 8371793 intergenic not near genes chr3L 8371844 intergenic not near genes chr3L_6_8370001 chr3L_8370001 RAL-228 563 chr3L 8395835 8395866 chr3L 8395928 8395928 10 88 2.0 3.5 2.8 2.6 93 chr3L 8395835 intergenic CG7120 + chr3L 8395882 intergenic CG7120 + chr3L 8395928 intergenic CG7120 + chr3L_10_8395001 chr3L_8395001 RAL-228 564 chr3L 8481778 8481803 chr3L 8490936 8490962 roo 4 9157 1.0 4.0 2.5 1.1 9184 chr3L 8481778 intron CG43163 - chr3L 8486370 intron CG43163 - chr3L 8490962 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-228 565 chr3L 8498304 8498319 chr3L 8505771 8505786 blood 4 7467 0.0 1.5 0.8 2.2 7482 chr3L 8498304 intron CG43163 - chr3L 8502045 intron CG43163 - chr3L 8505786 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-228 566 chr3L 8579937 8579962 chr3L 8580287 8580312 4 350 0.0 1.0 0.5 2.7 375 chr3L 8579937 intron CG43078 + chr3L 8580124 intron CG43078 + chr3L 8580312 intron CG43078 + chr3L_4_8580001 chr3L_8580001 RAL-228 567 chr3L 8784263 8784293 chr3L 8784370 8784401 8 103 2.0 2.0 2.0 2.7 138 chr3L 8784263 intron Fhos + chr3L 8784332 intron Fhos + chr3L 8784401 intron Fhos + chr3L_8_8780001 chr3L_8780001 RAL-228 568 chr3L 8832404 8832434 chr3L 8832494 8832527 10 93 3.5 4.5 4.0 2.0 123 chr3L 8832404 intron dally + chr3L 8832466 intron dally + chr3L 8832527 intron dally + chr3L_10_8830001 chr3L_8830001 RAL-228 569 chr3L 9003951 9003978 chr3L 9004036 9004063 6 84 2.0 3.5 2.8 1.6 112 chr3L 9003951 intergenic not near genes chr3L 9004007 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-228 570 chr3L 9013689 9013692 chr3L 18417066 18417066 11 9403375 18.5 15.0 16.8 0.6 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_11_13715001 chr3L_13715001 RAL-228 571 chr3L 9129324 9129343 chr3L 9129400 9129418 7 76 0.5 3.5 2.0 2.3 94 chr3L 9129324 intron bol - chr3L 9129371 intron bol - chr3L 9129418 intron bol - chr3L_7_9125001 chr3L_9125001 RAL-228 572 chr3L 9219244 9219267 chr3L 9219916 9219936 jockey 5 671 4.5 3.0 3.8 1.0 692 chr3L 9219244 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219936 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-228 573 chr3L 9256653 9256665 chr3L 9256741 9256754 4 89 2.0 3.0 2.5 1.1 101 chr3L 9256653 intron GluRIB + chr3L 9256704 intron GluRIB + chr3L 9256754 intron GluRIB + chr3L_4_9255001 chr3L_9255001 RAL-228 574 chr3L 9270628 9270649 chr3L 9278382 9278400 roo 11 7754 2.5 5.0 3.8 2.3 7772 chr3L 9270628 intron GluRIB + chr3L 9274514 intron GluRIB + chr3L 9278400 exon GluRIB + chr3L_11_9270001 chr3L_9270001 RAL-228 575 chr3L 9443515 9443538 chr3L 9445306 9445329 S-element 5 1791 2.5 5.0 3.8 1.0 1814 chr3L 9443515 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445329 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-228 576 chr3L 9510943 9510958 chr3L 9511022 9511037 4 79 0.0 4.5 2.2 1.2 94 chr3L 9510943 intron RpS9 - chr3L 9510990 intron RpS9 - chr3L 9511037 intron RpS9 - chr3L_4_9510001 chr3L_9510001 RAL-228 577 chr3L 9533756 9533783 chr3L 9541314 9541317 412 4 7553 3.0 3.5 3.2 1.0 7561 chr3L 9533756 intergenic not near genes chr3L 9537536 intergenic not near genes chr3L 9541317 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-228 578 chr3L 9575910 9575943 chr3L 9580988 9581021 jockey 8 5077 3.0 3.0 3.0 2.0 5111 chr3L 9575910 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581021 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-228 579 chr3L 9637856 9637887 chr3L 9637938 9637969 4 82 1.0 1.5 1.2 1.8 113 chr3L 9637856 intron fry - chr3L 9637912 intron fry - chr3L 9637969 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-228 580 chr3L 9917870 9917888 chr3L 9918053 9918071 4 183 1.5 3.0 2.2 1.2 201 chr3L 9917870 intron CG34356 + chr3L 9917970 intron CG34356 + chr3L 9918071 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-228 581 chr3L 9918880 9918910 chr3L 9918975 9919005 10 94 2.5 3.0 2.8 2.6 125 chr3L 9918880 intron CG34356 + chr3L 9918942 intron CG34356 + chr3L 9919005 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-228 582 chr3L 9925741 9925769 chr3L 9925985 9926013 17 243 1.5 1.0 1.2 7.7 272 chr3L 9925741 intron CG34356 + chr3L 9925877 intron CG34356 + chr3L 9926013 intron CG34356 + chr3L_17_9925001 chr3L_9925001 RAL-228 583 chr3L 10002511 10002544 chr3L 10003454 10003485 8 944 1.0 1.5 1.2 3.6 974 chr3L 10002511 intron dpr6 + chr3L 10002998 intron dpr6 + chr3L 10003485 intron dpr6 + chr3L_8_10000001 chr3L_10000001 RAL-228 584 chr3L 10046725 10046762 chr3L 10046807 10046844 8 80 2.5 2.0 2.2 2.5 119 chr3L 10046725 intron dpr6 + chr3L 10046784 intron dpr6 + chr3L 10046844 intron dpr6 + chr3L_8_10045001 chr3L_10045001 RAL-228 585 chr3L 10161429 10161453 chr3L 10161508 10161531 5 79 0.0 1.5 0.8 2.8 102 chr3L 10161429 intron dpr10 - chr3L 10161480 intron dpr10 - chr3L 10161531 intron dpr10 - chr3L_5_10160001 chr3L_10160001 RAL-228 586 chr3L 10219779 10219809 chr3L 10220290 10220321 7 512 3.5 3.0 3.2 1.7 542 chr3L 10219779 exon CG32055 - chr3L 10220050 exon CG32055 - chr3L 10220321 intergenic CG32055 -,scramb1 - chr3L_7_10220001 chr3L_10220001 RAL-228 587 chr3L 10308758 10308775 chr3L 10308835 10308848 5 76 2.5 3.0 2.8 1.3 90 chr3L 10308758 intergenic not near genes chr3L 10308803 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-228 588 chr3L 10417583 10417602 chr3L 10417660 10417678 9 77 1.5 3.5 2.5 2.6 95 chr3L 10417583 intergenic not near genes chr3L 10417630 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-228 589 chr3L 10469932 10469965 chr3L 10470008 10470041 5 76 0.5 1.0 0.8 2.8 109 chr3L 10469932 intergenic not near genes chr3L 10469986 intergenic not near genes chr3L 10470041 intergenic not near genes chr3L_5_10465001 chr3L_10465001 RAL-228 590 chr3L 10509490 10509510 chr3L 10509619 10509639 4 129 2.0 1.0 1.5 1.6 149 chr3L 10509490 intron A2bp1 + chr3L 10509564 intron A2bp1 + chr3L 10509639 intron A2bp1 + chr3L_4_10505001 chr3L_10505001 RAL-228 591 chr3L 10745542 10745561 chr3L 10745622 10745641 4 80 0.5 1.5 1.0 2.0 99 chr3L 10745542 intergenic not near genes chr3L 10745592 intergenic not near genes chr3L 10745641 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-228 592 chr3L 10778822 10778834 chr3L 10778898 10778908 4 75 0.0 4.0 2.0 1.3 86 chr3L 10778822 intergenic not near genes chr3L 10778865 intergenic not near genes chr3L 10778908 intergenic not near genes chr3L_4_10775001 chr3L_10775001 RAL-228 593 chr3L 10820435 10820440 chr3L 10820510 10820515 4 76 0.0 0.0 0.0 4.0 80 chr3L 10820435 intergenic not near genes chr3L 10820475 intergenic not near genes chr3L 10820515 intergenic not near genes chr3L_4_10820001 chr3L_10820001 RAL-228 594 chr3L 11087071 11087090 chr3L 11088860 11088879 S-element 4 1789 1.0 3.0 2.0 1.3 1808 chr3L 11087071 intron JIL-1 - chr3L 11087975 intron JIL-1 - chr3L 11088879 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-228 595 chr3L 11157746 11157768 chr3L 11157865 11157887 5 118 0.0 3.0 1.5 2.0 141 chr3L 11157746 intron CG32082 + chr3L 11157816 intron CG32082 + chr3L 11157887 intron CG32082 + chr3L_5_11155001 chr3L_11155001 RAL-228 596 chr3L 11245088 11245119 chr3L 11245180 11245209 7 92 2.5 2.0 2.2 2.2 121 chr3L 11245088 intergenic not near genes chr3L 11245148 intergenic not near genes chr3L 11245209 intergenic not near genes chr3L_7_11245001 chr3L_11245001 RAL-228 597 chr3L 11301686 11301713 chr3L 11301809 11301835 5 123 1.0 3.5 2.2 1.6 149 chr3L 11301686 intergenic not near genes chr3L 11301760 intergenic not near genes chr3L 11301835 intergenic not near genes chr3L_5_11300001 chr3L_11300001 RAL-228 598 chr3L 11358757 11358774 chr3L 11358832 11358857 7 81 0.5 4.0 2.2 2.2 100 chr3L 11358757 intergenic not near genes chr3L 11358807 intergenic not near genes chr3L 11358857 intergenic not near genes chr3L_7_11355001 chr3L_11355001 RAL-228 599 chr3L 11564791 11564801 chr3L 11572414 11572419 412 4 7622 2.5 6.5 4.5 0.7 7628 chr3L 11564791 exon CG33267 + chr3L 11568605 intron CG33267 + chr3L 11572419 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-228 600 chr3L 11588735 11588758 chr3L 11588891 11588914 8 156 0.5 1.0 0.8 4.4 179 chr3L 11588735 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_8_11585001 chr3L_11585001 RAL-228 601 chr3L 11744019 11744041 chr3L 11744126 11744148 7 108 3.5 0.0 1.8 2.5 129 chr3L 11744019 exon CG6024 - chr3L 11744084 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-228 602 chr3L 11864563 11864573 chr3L 11865858 11865868 pogo 5 1294 2.0 1.0 1.5 2.0 1305 chr3L 11864563 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865868 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-228 603 chr3L 12013915 12013938 chr3L 12014006 12014029 8 91 1.0 2.5 1.8 2.9 114 chr3L 12013915 intron rols - chr3L 12013972 intron rols - chr3L 12014029 intron rols - chr3L_8_12010001 chr3L_12010001 RAL-228 604 chr3L 12089082 12089096 chr3L 12089162 12089176 5 80 1.5 0.5 1.0 2.5 94 chr3L 12089082 3` UTR CG17154 + chr3L 12089129 3` UTR CG17154 + chr3L 12089176 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-228 605 chr3L 12219569 12219593 chr3L 12219651 12219674 4 81 4.5 6.5 5.5 0.6 105 chr3L 12219569 intron app - chr3L 12219622 intron app - chr3L 12219674 intron app - chr3L_4_12215001 chr3L_12215001 RAL-228 606 chr3L 12300847 12300857 chr3L 12300986 12300996 4 138 1.0 1.0 1.0 2.0 149 chr3L 12300847 intergenic CR44550 + chr3L 12300922 intergenic CR44550 + chr3L 12300996 5` UTR CR44550 + chr3L_4_12300001 chr3L_12300001 RAL-228 607 chr3L 12312487 12312503 chr3L 12312562 12312576 6 77 4.5 5.5 5.0 1.0 89 chr3L 12312487 intergenic not near genes chr3L 12312532 intergenic not near genes chr3L 12312576 intergenic not near genes chr3L_6_12310001 chr3L_12310001 RAL-228 608 chr3L 12327140 12327160 chr3L 12327253 12327273 8 112 2.0 3.0 2.5 2.3 133 chr3L 12327140 intergenic not near genes chr3L 12327206 intergenic not near genes chr3L 12327273 intergenic not near genes chr3L_8_12325001 chr3L_12325001 RAL-228 609 chr3L 12353925 12353951 chr3L 12354013 12354040 7 86 1.0 2.0 1.5 2.8 115 chr3L 12353925 intergenic not near genes chr3L 12353982 intergenic not near genes chr3L 12354040 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-228 610 chr3L 12364271 12364278 chr3L 12366802 12366804 5 2530 0.0 0.0 0.0 5.0 2533 chr3L 12364271 intergenic not near genes chr3L 12365538 intergenic not near genes chr3L 12366804 intergenic not near genes chr3L_5_12365001 chr3L_12365001 RAL-228 611 chr3L 12371091 12371105 chr3L 12371190 12371204 4 99 4.0 0.0 2.0 1.3 113 chr3L 12371091 intron Ncc69 - chr3L 12371148 intron Ncc69 - chr3L 12371204 intron Ncc69 - chr3L_4_12370001 chr3L_12370001 RAL-228 612 chr3L 12668067 12668077 chr3L 12668152 12668162 4 85 0.0 3.5 1.8 1.4 95 chr3L 12668067 intergenic not near genes chr3L 12668114 intergenic not near genes chr3L 12668162 intergenic not near genes chr3L_4_12665001 chr3L_12665001 RAL-228 613 chr3L 12801987 12802011 chr3L 12802063 12802086 4 74 3.0 1.0 2.0 1.3 99 chr3L 12801987 intron Atg1 - chr3L 12802036 intron Atg1 - chr3L 12802086 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-228 614 chr3L 12874936 12874955 chr3L 12877228 12877247 jockey 4 2292 1.0 2.5 1.8 1.4 2311 chr3L 12874936 intergenic not near genes chr3L 12876092 intergenic not near genes chr3L 12877247 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-228 615 chr3L 12894809 12894818 chr3L 12894887 12894896 6 78 3.0 6.0 4.5 1.1 87 chr3L 12894809 intergenic CG14118 + chr3L 12894852 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-228 616 chr3L 12919274 12919302 chr3L 12924747 12924775 Rt1c 6 5472 1.5 2.5 2.0 2.0 5501 chr3L 12919274 intergenic not near genes chr3L 12922024 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-228 617 chr3L 12955146 12955163 chr3L 12955222 12955239 4 76 0.5 2.0 1.2 1.8 93 chr3L 12955146 intergenic CG10752 - chr3L 12955192 intergenic not near genes chr3L 12955239 intergenic not near genes chr3L_4_12955001 chr3L_12955001 RAL-228 618 chr3L 12957794 12957812 chr3L 12962276 12962294 copia 5 4482 2.5 3.5 3.0 1.2 4500 chr3L 12957794 intergenic not near genes chr3L 12960044 intergenic not near genes chr3L 12962294 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-228 619 chr3L 13007695 13007726 chr3L 13007773 13007805 8 78 1.5 0.5 1.0 4.0 110 chr3L 13007695 exon CG11263 + chr3L 13007750 3` UTR CG11263 + chr3L 13007805 3` UTR CG11263 + chr3L_8_13005001 chr3L_13005001 RAL-228 620 chr3L 13074038 13074070 chr3L 13074171 13074172 4 125 3.0 3.0 3.0 1.0 134 chr3L 13074038 intergenic not near genes chr3L 13074105 intergenic not near genes chr3L 13074172 intergenic not near genes chr3L_4_13070001 chr3L_13070001 RAL-228 621 chr3L 13207132 13207150 chr3L 13207209 13207226 4 77 2.0 3.5 2.8 1.1 94 chr3L 13207132 intergenic not near genes chr3L 13207179 intergenic not near genes chr3L 13207226 intergenic not near genes chr3L_4_13205001 chr3L_13205001 RAL-228 622 chr3L 13223275 13223289 chr3L 13223376 13223384 5 100 5.0 2.5 3.8 1.0 109 chr3L 13223275 intergenic not near genes chr3L 13223330 intergenic not near genes chr3L 13223384 intergenic not near genes chr3L_5_13220001 chr3L_13220001 RAL-228 623 chr3L 13245111 13245117 chr3L 13245243 13245249 5 132 2.5 1.5 2.0 1.7 138 chr3L 13245111 intron caps + chr3L 13245180 intron caps + chr3L 13245249 intron caps + chr3L_5_13245001 chr3L_13245001 RAL-228 624 chr3L 13267289 13267303 chr3L 13267402 13267416 4 113 1.0 1.5 1.2 1.8 127 chr3L 13267289 intron caps + chr3L 13267352 intron caps + chr3L 13267416 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-228 625 chr3L 13525158 13525186 chr3L 13532954 13532981 roo 8 7796 2.0 4.0 3.0 2.0 7823 chr3L 13525158 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-228 626 chr3L 13747538 13747550 chr3L 13747621 13747640 4 88 3.0 2.5 2.8 1.1 102 chr3L 13747538 intron bru-3 - chr3L 13747589 intron bru-3 - chr3L 13747640 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-228 627 chr3L 13804550 13804575 chr3L 13822836 13822861 roo 6 18286 1.5 2.5 2.0 2.0 18311 chr3L 13804550 intergenic not near genes chr3L 13813706 intergenic not near genes chr3L 13822861 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-228 628 chr3L 13841520 13841548 chr3L 13841601 13841632 10 84 2.0 1.5 1.8 3.6 112 chr3L 13841520 exon CG8757 - chr3L 13841576 intron CG8757 - chr3L 13841632 exon CG8757 - chr3L_10_13840001 chr3L_13840001 RAL-228 629 chr3L 13895160 13895176 chr3L 13895237 13895254 5 77 0.0 0.0 0.0 5.0 94 chr3L 13895160 intron dysc - chr3L 13895207 intron dysc - chr3L 13895254 intron dysc - chr3L_5_13895001 chr3L_13895001 RAL-228 630 chr3L 14169004 14169039 chr3L 14169163 14169198 12 158 1.0 3.0 2.0 4.0 194 chr3L 14169004 intergenic not near genes chr3L 14169101 intergenic not near genes chr3L 14169198 intergenic not near genes chr3L_12_14165001 chr3L_14165001 RAL-228 631 chr3L 14245571 14245586 chr3L 14245665 14245680 1360 4 92 5.0 0.5 2.8 1.1 109 chr3L 14245571 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245680 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-228 632 chr3L 14266052 14266082 chr3L 14266136 14266168 6 85 2.5 2.0 2.2 1.9 116 chr3L 14266052 intergenic not near genes chr3L 14266110 intergenic not near genes chr3L 14266168 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-228 633 chr3L 14267371 14267398 chr3L 14271811 14271838 F-element 5 4440 1.0 0.5 0.8 2.8 4467 chr3L 14267371 intergenic not near genes chr3L 14269604 intergenic not near genes chr3L 14271838 intergenic not near genes chr3L_5_14265001 chr3L_14265001 RAL-228 634 chr3L 14282592 14282600 chr3L 14282672 14282680 4 79 4.0 4.5 4.2 0.8 88 chr3L 14282592 intron fz + chr3L 14282636 intron fz + chr3L 14282680 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-228 635 chr3L 14295985 14296014 chr3L 14296471 14296500 roo 6 485 3.5 2.5 3.0 1.5 515 chr3L 14295985 intron fz + chr3L 14296242 intron fz + chr3L 14296500 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-228 636 chr3L 14312030 14312059 chr3L 14316832 14316832 X-element 5 4801 3.5 1.5 2.5 1.4 4802 chr3L 14312030 exon fz + chr3L 14314431 intron fz + chr3L 14316832 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-228 637 chr3L 14422104 14422132 chr3L 14422196 14422224 8 92 3.0 1.0 2.0 2.7 120 chr3L 14422104 intron bbg - chr3L 14422164 intron bbg - chr3L 14422224 intron bbg - chr3L_8_14420001 chr3L_14420001 RAL-228 638 chr3L 14462639 14462666 chr3L 14462764 14462791 6 125 0.5 2.0 1.2 2.7 152 chr3L 14462639 intron bbg - chr3L 14462715 intron bbg - chr3L 14462791 intron bbg - chr3L_6_14460001 chr3L_14460001 RAL-228 639 chr3L 14473724 14473752 chr3L 14473812 14473839 7 87 1.5 1.5 1.5 2.8 115 chr3L 14473724 intron bbg - chr3L 14473782 intron bbg - chr3L 14473839 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-228 640 chr3L 14721182 14721209 chr3L 14723025 14723051 Rt1c 6 1841 2.5 2.5 2.5 1.7 1869 chr3L 14721182 intron ome + chr3L 14722116 intron ome + chr3L 14723051 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-228 641 chr3L 15085057 15085080 chr3L 15086223 15086234 1360 5 1163 1.0 3.5 2.2 1.6 1177 chr3L 15085057 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086234 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-228 642 chr3L 15192766 15192797 chr3L 15192856 15192887 8 88 1.5 1.5 1.5 3.2 121 chr3L 15192766 intergenic not near genes chr3L 15192826 intergenic not near genes chr3L 15192887 intergenic not near genes chr3L_8_15190001 chr3L_15190001 RAL-228 643 chr3L 15231388 15231423 chr3L 15231481 15231495 8 90 1.0 0.0 0.5 5.3 107 chr3L 15231388 intergenic not near genes chr3L 15231442 intergenic not near genes chr3L 15231495 intergenic not near genes chr3L_8_15230001 chr3L_15230001 RAL-228 644 chr3L 15284568 15284592 chr3L 15284647 15284671 10 78 3.5 1.5 2.5 2.9 103 chr3L 15284568 intergenic not near genes chr3L 15284620 intergenic not near genes chr3L 15284671 intergenic not near genes chr3L_10_15280001 chr3L_15280001 RAL-228 645 chr3L 15347411 15347442 chr3L 15347487 15347518 5 76 1.5 1.0 1.2 2.3 107 chr3L 15347411 intergenic not near genes chr3L 15347464 intergenic not near genes chr3L 15347518 intergenic not near genes chr3L_5_15345001 chr3L_15345001 RAL-228 646 chr3L 15643592 15643620 chr3L 15643879 15643907 6 287 2.0 1.5 1.8 2.1 315 chr3L 15643592 intron comm3 - chr3L 15643750 intron comm3 - chr3L 15643907 intron comm3 - chr3L_6_15640001 chr3L_15640001 RAL-228 647 chr3L 15676115 15676132 chr3L 15676195 15676210 5 80 0.5 1.5 1.0 2.5 95 chr3L 15676115 intergenic not near genes chr3L 15676162 intergenic not near genes chr3L 15676210 intergenic not near genes chr3L_5_15675001 chr3L_15675001 RAL-228 648 chr3L 15679173 15679197 chr3L 15679504 15679529 4 332 3.5 0.5 2.0 1.3 356 chr3L 15679173 intergenic not near genes chr3L 15679351 intergenic CG7304 + chr3L 15679529 intergenic CG7304 + chr3L_4_15675001 chr3L_15675001 RAL-228 649 chr3L 15715064 15715074 chr3L 15715148 15715156 4 82 2.0 8.0 5.0 0.7 92 chr3L 15715064 intergenic not near genes chr3L 15715110 intergenic not near genes chr3L 15715156 intergenic not near genes chr3L_4_15715001 chr3L_15715001 RAL-228 650 chr3L 15883193 15883222 chr3L 15883484 15883513 4 292 1.0 0.5 0.8 2.2 320 chr3L 15883193 intron pHCl - chr3L 15883353 intron pHCl - chr3L 15883513 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-228 651 chr3L 15899234 15899259 chr3L 15899793 15899826 jockey 4 556 2.5 1.5 2.0 1.3 592 chr3L 15899234 intergenic pHCl - chr3L 15899530 intergenic not near genes chr3L 15899826 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-228 652 chr3L 15948743 15948776 chr3L 15948826 15948857 5 81 1.5 0.5 1.0 2.5 114 chr3L 15948743 intron Pka-C3 - chr3L 15948800 intron Pka-C3 - chr3L 15948857 intron Pka-C3 - chr3L_5_15945001 chr3L_15945001 RAL-228 653 chr3L 16194337 16194357 chr3L 16194427 16194447 8 88 1.5 5.0 3.2 1.9 110 chr3L 16194337 intergenic not near genes chr3L 16194392 intergenic not near genes chr3L 16194447 intergenic not near genes chr3L_8_16190001 chr3L_16190001 RAL-228 654 chr3L 16194359 16194365 chr3L 16194426 16194438 4 80 1.0 5.0 3.0 1.0 79 chr3L 16194359 intergenic not near genes chr3L 16194398 intergenic not near genes chr3L 16194438 intergenic not near genes chr3L_4_16190001 chr3L_16190001 RAL-228 655 chr3L 16301268 16301295 chr3L 16301356 16301375 6 86 1.5 4.0 2.8 1.6 107 chr3L 16301268 intergenic CG4982 + chr3L 16301322 intergenic CG4982 + chr3L 16301375 intergenic CG4982 + chr3L_6_16300001 chr3L_16300001 RAL-228 656 chr3L 16340267 16340290 chr3L 16340390 16340414 5 123 4.0 2.0 3.0 1.2 147 chr3L 16340267 intron CG4998 + chr3L 16340340 intron CG4998 + chr3L 16340414 intron CG4998 + chr3L_5_16340001 chr3L_16340001 RAL-228 657 chr3L 16432961 16432984 chr3L 16434355 16434378 4 1394 3.0 1.0 2.0 1.3 1417 chr3L 16432961 intron,intron CG33158 +,dsx-c73A - chr3L 16433670 intron,intron CG33158 +,dsx-c73A - chr3L 16434378 intron,intron CG33158 +,dsx-c73A - chr3L_4_16430001 chr3L_16430001 RAL-228 658 chr3L 16437070 16437099 chr3L 16437149 16437185 4 82 2.0 0.0 1.0 2.0 115 chr3L 16437070 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437185 intron,intron CG33158 +,dsx-c73A - chr3L_4_16435001 chr3L_16435001 RAL-228 659 chr3L 16443860 16443877 chr3L 16446200 16446216 Doc 6 2339 1.5 5.0 3.2 1.4 2356 chr3L 16443860 intron,intron CG33158 +,dsx-c73A - chr3L 16445038 intron,intron CG33158 +,dsx-c73A - chr3L 16446216 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-228 660 chr3L 16457530 16457558 chr3L 16457625 16457653 5 95 0.0 1.5 0.8 2.8 123 chr3L 16457530 intron CG33158 + chr3L 16457592 intron CG33158 + chr3L 16457653 intron CG33158 + chr3L_5_16455001 chr3L_16455001 RAL-228 661 chr3L 16493974 16494011 chr3L 16494491 16494528 jockey 13 515 1.5 4.5 3.0 3.2 554 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494251 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494528 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_13_16490001 chr3L_16490001 RAL-228 662 chr3L 16503557 16503578 chr3L 16503795 16503818 9 240 3.5 0.5 2.0 3.0 261 chr3L 16503557 intron CG43373 - chr3L 16503688 intron CG43373 - chr3L 16503818 intron CG43373 - chr3L_9_16500001 chr3L_16500001 RAL-228 663 chr3L 16506667 16506695 chr3L 16506859 16506888 5 193 0.5 1.5 1.0 2.5 221 chr3L 16506667 intron CG43373 - chr3L 16506778 intron CG43373 - chr3L 16506888 intron CG43373 - chr3L_5_16505001 chr3L_16505001 RAL-228 664 chr3L 16514578 16514600 chr3L 16514675 16514697 4 97 0.0 0.5 0.2 3.3 119 chr3L 16514578 intron CG43373 - chr3L 16514638 intron CG43373 - chr3L 16514697 intron CG43373 - chr3L_4_16510001 chr3L_16510001 RAL-228 665 chr3L 16610686 16610718 chr3L 16610771 16610803 5 85 0.0 0.0 0.0 5.0 117 chr3L 16610686 3` UTR Su(P) - chr3L 16610744 exon Su(P) - chr3L 16610803 exon Su(P) - chr3L_5_16610001 chr3L_16610001 RAL-228 666 chr3L 16749212 16749235 chr3L 16749284 16749311 4 74 2.5 1.0 1.8 1.4 99 chr3L 16749212 intergenic not near genes chr3L 16749262 intergenic not near genes chr3L 16749311 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-228 667 chr3L 16817879 16817907 chr3L 16818019 16818046 8 140 3.5 2.5 3.0 2.0 167 chr3L 16817879 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818046 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-228 668 chr3L 16861043 16861049 chr3L 16861145 16861151 4 102 1.0 5.0 3.0 1.0 108 chr3L 16861043 intron,intron Rh4 -,CG13029 + chr3L 16861097 intron,intron Rh4 -,CG13029 + chr3L 16861151 intron,intron Rh4 -,CG13029 + chr3L_4_16860001 chr3L_16860001 RAL-228 669 chr3L 16945726 16945758 chr3L 16954879 16954911 roo 12 9150 4.0 5.0 4.5 2.2 9185 chr3L 16945726 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954911 5` UTR Nc73EF + chr3L_12_16950001 chr3L_16950001 RAL-228 670 chr3L 17050016 17050038 chr3L 17050107 17050128 7 91 1.0 2.5 1.8 2.5 112 chr3L 17050016 intron rogdi + chr3L 17050072 intron rogdi + chr3L 17050128 intron rogdi + chr3L_7_17050001 chr3L_17050001 RAL-228 671 chr3L 17117104 17117128 chr3L 17117189 17117213 7 84 2.5 2.0 2.2 2.2 109 chr3L 17117104 intron Rbp6 - chr3L 17117158 intron Rbp6 - chr3L 17117213 intron Rbp6 - chr3L_7_17115001 chr3L_17115001 RAL-228 672 chr3L 17260496 17260522 chr3L 17260683 17260707 6 184 1.0 1.0 1.0 3.0 211 chr3L 17260496 intron CR43870 + chr3L 17260602 intron CR43870 + chr3L 17260707 intron CR43870 + chr3L_6_17260001 chr3L_17260001 RAL-228 673 chr3L 17510745 17510764 chr3L 17510829 17510848 5 84 3.0 6.5 4.8 0.9 103 chr3L 17510745 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-228 674 chr3L 17516978 17517009 chr3L 17524536 17524566 412 5 7557 0.5 1.0 0.8 2.8 7588 chr3L 17516978 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524566 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-228 675 chr3L 17580603 17580608 chr3L 17580779 17580784 4 176 1.0 0.0 0.5 2.7 181 chr3L 17580603 intron Eip74EF - chr3L 17580694 intron Eip74EF - chr3L 17580784 intron Eip74EF - chr3L_4_17580001 chr3L_17580001 RAL-228 676 chr3L 18000680 18000708 chr3L 18000757 18000784 6 77 0.5 4.5 2.5 1.7 104 chr3L 18000680 intron Eip75B - chr3L 18000732 intron Eip75B - chr3L 18000784 intron Eip75B - chr3L_6_18000001 chr3L_18000001 RAL-228 677 chr3L 18150417 18150433 chr3L 18150519 18150535 5 102 0.0 0.0 0.0 5.0 118 chr3L 18150417 intron CG7330 + chr3L 18150476 intron CG7330 + chr3L 18150535 intron CG7330 + chr3L_5_18150001 chr3L_18150001 RAL-228 678 chr3L 9013689 9013695 chr3L 18417066 18417066 4 9403376 20.0 15.0 17.5 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-228 679 chr3L 18464493 18464514 chr3L 18464573 18464599 7 84 1.0 3.0 2.0 2.3 106 chr3L 18464493 intergenic not near genes chr3L 18464546 intergenic not near genes chr3L 18464599 intergenic not near genes chr3L_7_18460001 chr3L_18460001 RAL-228 680 chr3L 18506136 18506151 chr3L 18509599 18509614 F-element 4 3463 2.0 0.0 1.0 2.0 3478 chr3L 18506136 intergenic not near genes chr3L 18507875 intergenic not near genes chr3L 18509614 intergenic not near genes chr3L_4_18505001 chr3L_18505001 RAL-228 681 chr3L 18546705 18546737 chr3L 18546799 18546831 8 94 3.5 2.0 2.8 2.1 126 chr3L 18546705 intergenic not near genes chr3L 18546768 intergenic not near genes chr3L 18546831 intergenic not near genes chr3L_8_18545001 chr3L_18545001 RAL-228 682 chr3L 18582236 18582246 chr3L 18582321 18582331 5 85 2.5 3.0 2.8 1.3 95 chr3L 18582236 intergenic not near genes chr3L 18582284 intergenic not near genes chr3L 18582331 intergenic not near genes chr3L_5_18580001 chr3L_18580001 RAL-228 683 chr3L 18696077 18696101 chr3L 18696193 18696220 8 117 4.5 2.0 3.2 1.9 143 chr3L 18696077 intergenic Dic4 -,CG6893 + chr3L 18696148 intergenic Dic4 -,CG6893 + chr3L 18696220 intergenic Dic4 - chr3L_8_18695001 chr3L_18695001 RAL-228 684 chr3L 18721778 18721783 chr3L 18721869 18721874 4 91 4.0 0.5 2.2 1.2 96 chr3L 18721778 intergenic CG12477 - chr3L 18721826 intergenic CG12477 - chr3L 18721874 intergenic CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-228 685 chr3L 18733574 18733607 chr3L 18733694 18733727 11 119 3.0 4.5 3.8 2.3 153 chr3L 18733574 intergenic not near genes chr3L 18733650 intergenic not near genes chr3L 18733727 intergenic not near genes chr3L_11_18730001 chr3L_18730001 RAL-228 686 chr3L 18772430 18772437 chr3L 18781111 18781118 roo 4 8681 3.5 2.5 3.0 1.0 8688 chr3L 18772430 intron ftz-f1 - chr3L 18776774 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-228 687 chr3L 18929956 18929988 chr3L 18930040 18930072 5 84 2.0 0.5 1.2 2.3 116 chr3L 18929956 intron CG32204 - chr3L 18930014 intron CG32204 - chr3L 18930072 exon CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-228 688 chr3L 18969552 18969568 chr3L 18969628 18969644 4 76 1.5 0.5 1.0 2.0 92 chr3L 18969552 intergenic not near genes chr3L 18969598 intergenic not near genes chr3L 18969644 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-228 689 chr3L 18981179 18981211 chr3L 18981311 18981343 4 132 0.5 3.0 1.8 1.4 164 chr3L 18981179 intergenic not near genes chr3L 18981261 intergenic not near genes chr3L 18981343 intergenic not near genes chr3L_4_18980001 chr3L_18980001 RAL-228 690 chr3L 19015182 19015213 chr3L 19015266 19015293 4 82 0.0 0.0 0.0 4.0 111 chr3L 19015182 intron nkd - chr3L 19015238 intron nkd - chr3L 19015293 intron nkd - chr3L_4_19015001 chr3L_19015001 RAL-228 691 chr3L 19082037 19082063 chr3L 19082139 19082159 11 101 2.5 2.0 2.2 3.4 122 chr3L 19082037 intron Mkp3 - chr3L 19082098 intron Mkp3 - chr3L 19082159 intron Mkp3 - chr3L_11_19080001 chr3L_19080001 RAL-228 692 chr3L 19117040 19117066 chr3L 19124487 19124513 mdg1 8 7446 3.0 1.0 2.0 2.7 7473 chr3L 19117040 intron CG14082 - chr3L 19120776 intron CG14082 - chr3L 19124513 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-228 693 chr3L 19158729 19158752 chr3L 19158813 19158836 4 84 2.0 1.0 1.5 1.6 107 chr3L 19158729 intron fz2 - chr3L 19158782 intron fz2 - chr3L 19158836 intron fz2 - chr3L_4_19155001 chr3L_19155001 RAL-228 694 chr3L 19182387 19182413 chr3L 19182467 19182494 6 81 0.5 0.5 0.5 4.0 107 chr3L 19182387 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182494 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-228 695 chr3L 19269824 19269830 chr3L 19270025 19270033 6 203 0.0 3.5 1.8 2.1 209 chr3L 19269824 intron,exon CG14085 +,CG14088 - chr3L 19269928 intron,exon CG14085 +,CG14088 - chr3L 19270033 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-228 696 chr3L 19282267 19282296 chr3L 19282363 19282391 6 96 1.5 3.0 2.2 1.9 124 chr3L 19282267 3` UTR Gbs-76A - chr3L 19282329 3` UTR Gbs-76A - chr3L 19282391 3` UTR Gbs-76A - chr3L_6_19280001 chr3L_19280001 RAL-228 697 chr3L 19417804 19417834 chr3L 19417881 19417911 5 79 2.5 1.0 1.8 1.8 107 chr3L 19417804 intergenic not near genes chr3L 19417858 intergenic not near genes chr3L 19417911 intergenic not near genes chr3L_5_19415001 chr3L_19415001 RAL-228 698 chr3L 19426747 19426780 chr3L 19426825 19426858 11 75 4.5 5.0 4.8 1.9 111 chr3L 19426747 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426858 intergenic not near genes chr3L_11_19425001 chr3L_19425001 RAL-228 699 chr3L 19430400 19430427 chr3L 19430478 19430504 6 78 1.0 1.0 1.0 3.0 104 chr3L 19430400 intergenic not near genes chr3L 19430452 intergenic not near genes chr3L 19430504 intergenic not near genes chr3L_6_19430001 chr3L_19430001 RAL-228 700 chr3L 19848504 19848535 chr3L 19857694 19857725 roo 5 9189 0.5 2.5 1.5 2.0 9221 chr3L 19848504 intron Papss + chr3L 19853114 intron Papss + chr3L 19857725 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-228 701 chr3L 20148284 20148307 chr3L 20148374 20148397 6 90 3.0 2.0 2.5 1.7 113 chr3L 20148284 intergenic not near genes chr3L 20148340 intergenic not near genes chr3L 20148397 intergenic not near genes chr3L_6_20145001 chr3L_20145001 RAL-228 702 chr3L 20257342 20257354 chr3L 20258461 20258474 pogo 5 1120 0.0 2.5 1.2 2.3 1132 chr3L 20257342 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258474 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-228 703 chr3L 20710763 20710791 chr3L 20710840 20710868 4 77 0.0 2.0 1.0 2.0 105 chr3L 20710763 intergenic not near genes chr3L 20710816 intergenic not near genes chr3L 20710868 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-228 704 chr3L 20752621 20752641 chr3L 20755533 20755553 4 2912 0.0 0.0 0.0 4.0 2932 chr3L 20752621 intergenic not near genes chr3L 20754087 intergenic not near genes chr3L 20755553 exon CG33912 - chr3L_4_20750001 chr3L_20750001 RAL-228 705 chr3L 20917092 20917119 chr3L 20917168 20917196 6 77 2.5 0.5 1.5 2.4 104 chr3L 20917092 intergenic not near genes chr3L 20917144 intergenic not near genes chr3L 20917196 intergenic not near genes chr3L_6_20915001 chr3L_20915001 RAL-228 706 chr3L 21010378 21010388 chr3L 21010484 21010495 4 106 4.0 0.0 2.0 1.3 117 chr3L 21010378 intron skd - chr3L 21010436 intron skd - chr3L 21010495 intron skd - chr3L_4_21010001 chr3L_21010001 RAL-228 707 chr3L 21014922 21014948 chr3L 21023398 21023429 Tirant 9 8479 2.0 2.0 2.0 3.0 8507 chr3L 21014922 intron skd - chr3L 21019176 intron skd - chr3L 21023429 intron skd - chr3L_9_21015001 chr3L_21015001 RAL-228 708 chr3L 21095427 21095465 chr3L 21097058 21097096 5 1632 4.0 15.0 9.5 0.5 1669 chr3L 21095427 intron ko - chr3L 21096262 intron ko - chr3L 21097096 intron ko - chr3L_5_21095001 chr3L_21095001 RAL-228 709 chr3L 21158598 21158628 chr3L 21158674 21158704 10 74 1.5 1.5 1.5 4.0 106 chr3L 21158598 intron Ac78C - chr3L 21158651 intron Ac78C - chr3L 21158704 intron Ac78C - chr3L_10_21155001 chr3L_21155001 RAL-228 710 chr3L 21186049 21186086 chr3L 21186125 21186147 5 73 1.0 3.5 2.2 1.6 98 chr3L 21186049 intron CG42337 - chr3L 21186098 intron CG42337 - chr3L 21186147 intron CG42337 - chr3L_5_21185001 chr3L_21185001 RAL-228 711 chr3L 21243755 21243768 chr3L 21251309 21251331 412 6 7560 2.5 2.5 2.5 1.7 7576 chr3L 21243755 intron Eip78C + chr3L 21247543 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-228 712 chr3L 21301731 21301763 chr3L 21301817 21301849 10 86 3.0 1.0 2.0 3.3 118 chr3L 21301731 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301849 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_10_21300001 chr3L_21300001 RAL-228 713 chr3L 21395147 21395166 chr3L 21395234 21395254 6 88 0.5 2.5 1.5 2.4 107 chr3L 21395147 intron rgn + chr3L 21395200 intron rgn + chr3L 21395254 intron rgn + chr3L_6_21395001 chr3L_21395001 RAL-228 714 chr3L 21498846 21498858 chr3L 21500478 21500494 1360 4 1635 1.0 4.5 2.8 1.1 1648 chr3L 21498846 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500494 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-228 715 chr3L 21699257 21699289 chr3L 21699538 21699570 8 281 0.5 0.5 0.5 5.3 313 chr3L 21699257 intron CG32447 - chr3L 21699414 intron CG32447 - chr3L 21699570 intron CG32447 - chr3L_8_21695001 chr3L_21695001 RAL-228 716 chr3L 22137527 22137555 chr3L 22137604 22137632 5 77 2.5 2.0 2.2 1.6 105 chr3L 22137527 intron olf413 + chr3L 22137580 intron olf413 + chr3L 22137632 intron olf413 + chr3L_5_22135001 chr3L_22135001 RAL-228 717 chr3L 22223440 22223467 chr3L 22223600 22223628 5 161 2.0 3.0 2.5 1.4 188 chr3L 22223440 intron olf413 + chr3L 22223534 intron olf413 + chr3L 22223628 intron olf413 + chr3L_5_22220001 chr3L_22220001 RAL-228 718 chr3L 22355602 22355619 chr3L 22355683 22355700 5 81 5.0 2.5 3.8 1.0 98 chr3L 22355602 intron Ten-m - chr3L 22355651 intron Ten-m - chr3L 22355700 intron Ten-m - chr3L_5_22355001 chr3L_22355001 RAL-228 719 chr3L 22399303 22399328 chr3L 22399448 22399473 10 145 2.0 3.5 2.8 2.6 170 chr3L 22399303 intron Ten-m - chr3L 22399388 intron Ten-m - chr3L 22399473 intron Ten-m - chr3L_10_22395001 chr3L_22395001 RAL-228 720 chr3L 22413877 22413902 chr3L 22413961 22413986 10 83 3.5 5.0 4.2 1.9 109 chr3L 22413877 intergenic not near genes chr3L 22413932 intergenic not near genes chr3L 22413986 intergenic not near genes chr3L_10_22410001 chr3L_22410001 RAL-228 721 chr3L 22447942 22447968 chr3L 22448073 22448102 7 133 3.0 6.0 4.5 1.3 160 chr3L 22447942 intergenic not near genes chr3L 22448022 intergenic not near genes chr3L 22448102 intergenic not near genes chr3L_7_22445001 chr3L_22445001 RAL-228 722 chr3L 22498106 22498141 chr3L 22498231 22498262 13 123 1.5 1.5 1.5 5.2 156 chr3L 22498106 intergenic CR45431 + chr3L 22498184 intergenic CR45431 + chr3L 22498262 intergenic CR45431 + chr3L_13_22495001 chr3L_22495001 RAL-228 723 chr3L 22522706 22522726 chr3L 22522782 22522803 9 77 0.5 3.0 1.8 3.2 97 chr3L 22522706 intergenic not near genes chr3L 22522754 intergenic not near genes chr3L 22522803 intergenic not near genes chr3L_9_22520001 chr3L_22520001 RAL-228 724 chr3L 22577623 22577649 chr3L 22582411 22582427 Doc 10 4784 1.5 3.5 2.5 2.9 4804 chr3L 22577623 intergenic not near genes chr3L 22580025 intergenic not near genes chr3L 22582427 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-228 725 chr3L 22617192 22617222 chr3L 22624644 22624674 blood 4 7452 3.5 1.5 2.5 1.1 7482 chr3L 22617192 intron CG14459 - chr3L 22620933 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-228 726 chr3L 22737812 22737839 chr3L 22737892 22737920 10 80 3.5 1.5 2.5 2.9 108 chr3L 22737812 intron CG11241 - chr3L 22737866 intron CG11241 - chr3L 22737920 intron CG11241 - chr3L_10_22735001 chr3L_22735001 RAL-228 727 chr3L 22761403 22761413 chr3L 22766837 22766847 Ivk 4 5434 2.0 2.0 2.0 1.3 5444 chr3L 22761403 intron SPoCk + chr3L 22764125 intron SPoCk + chr3L 22766847 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-228 728 chr3L 22838586 22838621 chr3L 22838666 22838700 6 79 2.0 0.5 1.2 2.7 114 chr3L 22838586 intergenic CG11226 + chr3L 22838643 intergenic CG11226 + chr3L 22838700 intergenic not near genes chr3L_6_22835001 chr3L_22835001 RAL-228 729 chr3L 22865982 22866004 chr3L 22867115 22867137 Doc 4 1133 3.0 1.5 2.2 1.2 1155 chr3L 22865982 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867137 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-228 730 chr3L 22897200 22897224 chr3L 22897283 22897307 6 82 2.5 2.5 2.5 1.7 107 chr3L 22897200 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897307 intergenic not near genes chr3L_6_22895001 chr3L_22895001 RAL-228 731 chr3L 19220633 19220638 chr3L 22908066 22908066 8 3687431 10.0 8.0 9.0 0.8 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-228 732 chr3L 19220633 19220637 chr3L 22908067 22908067 7 3687433 9.5 8.0 8.8 0.7 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-228 733 chr3L 23092999 23093025 chr3L 23093084 23093107 5 83 20.0 15.5 17.8 0.3 108 chr3L 23092999 intergenic RpL10 - chr3L 23093053 intergenic RpL10 - chr3L 23093107 intergenic RpL10 - chr3L_5_23090001 chr3L_23090001 RAL-228 734 chr3L 23875535 23875551 chr3L 23875615 23875632 4 80 4.0 2.0 3.0 1.0 97 chr3L 23875535 intron CG40470 - chr3L 23875584 intron CG40470 - chr3L 23875632 intron CG40470 - chr3L_4_23875001 chr3L_23875001 RAL-228 735 chr3L 24168801 24168819 chr3L 24176115 24176147 ZAM 6 7324 4.5 6.0 5.2 1.0 7346 chr3L 24168801 intron Snap25 + chr3L 24172474 intron Snap25 + chr3L 24176147 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-228 736 chr3L 25008044 25008061 chr3L 25008125 25008143 4 82 3.0 1.0 2.0 1.3 99 chr3L 25008044 intergenic not near genes chr3L 25008094 intergenic not near genes chr3L 25008143 intergenic not near genes chr3L_4_25005001 chr3L_25005001 RAL-228 737 chr3L 26345015 26345043 chr3L 26345293 26345321 8 276 13.5 18.5 16.0 0.5 306 chr3L 26345015 intergenic not near genes chr3L 26345168 intergenic not near genes chr3L 26345321 intergenic not near genes chr3L_8_26345001 chr3L_26345001 RAL-228 738 chr3L 27390694 27390712 chr3L 27390768 27390791 5 77 26.5 25.5 26.0 0.2 97 chr3L 27390694 intron Dbp80 + chr3L 27390742 intron Dbp80 + chr3L 27390791 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-228 739 chr3R 1830810 1830835 chr3R 1830890 1830915 4 79 0.5 0.0 0.2 3.3 105 chr3R 1830810 intergenic not near genes chr3R 1830862 intergenic not near genes chr3R 1830915 intergenic not near genes chr3R_4_1830001 chr3R_1830001 RAL-228 740 chr3R 2534136 2534165 chr3R 2541704 2541720 7 7561 13.0 13.5 13.2 0.5 7584 chr3R 2534136 intergenic not near genes chr3R 2537928 intergenic not near genes chr3R 2541720 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-228 741 chr3R 4190667 4190681 chr3R 4190837 4190851 4 170 1.0 3.0 2.0 1.3 184 chr3R 4190667 intergenic Dsk - chr3R 4190759 intergenic Dsk - chr3R 4190851 intergenic not near genes chr3R_4_4190001 chr3R_4190001 RAL-228 742 chr3R 4206070 4206103 chr3R 4211645 4211678 mdg3 4 5575 1.0 0.5 0.8 2.2 5608 chr3R 4206070 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211678 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-228 743 chr3R 4291722 4291747 chr3R 4291800 4291814 9 73 3.0 2.5 2.8 2.4 92 chr3R 4291722 intron cpx + chr3R 4291768 intron cpx + chr3R 4291814 intron cpx + chr3R_9_4290001 chr3R_4290001 RAL-228 744 chr3R 4366760 4366783 chr3R 4375143 4375166 roo 5 8383 1.0 0.0 0.5 3.3 8406 chr3R 4366760 3` UTR CG1090 + chr3R 4370963 intergenic not near genes chr3R 4375166 5` UTR CR44922 + chr3R_5_4370001 chr3R_4370001 RAL-228 745 chr3R 4408408 4408441 chr3R 4412712 4412745 Juan 4 4304 1.0 0.5 0.8 2.2 4337 chr3R 4408408 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412745 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-228 746 chr3R 4463397 4463411 chr3R 4463473 4463482 4 75 2.0 1.0 1.5 1.6 85 chr3R 4463397 intergenic not near genes chr3R 4463440 intergenic not near genes chr3R 4463482 intergenic not near genes chr3R_4_4460001 chr3R_4460001 RAL-228 747 chr3R 4609553 4609579 chr3R 4610714 4610743 1360 9 1163 0.5 3.0 1.8 3.2 1190 chr3R 4609553 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610743 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-228 748 chr3R 4753239 4753268 chr3R 4757542 4757571 F-element 6 4303 6.0 2.5 4.2 1.2 4332 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755405 intron,intron atms +,CG44098 - chr3R 4757571 intron,exon atms +,CG44098 - chr3R_6_4755001 chr3R_4755001 RAL-228 749 chr3R 4769163 4769185 chr3R 4769241 4769263 5 78 2.0 1.0 1.5 2.0 100 chr3R 4769163 intron,intron atms +,CG44098 - chr3R 4769213 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-228 750 chr3R 4784515 4784548 chr3R 4791388 4791421 12 6875 21.5 31.0 26.2 0.4 6906 chr3R 4784515 exon CG17387 - chr3R 4787968 exon ctrip - chr3R 4791421 exon ctrip - chr3R_12_4785001 chr3R_4785001 RAL-228 751 chr3R 4887487 4887511 chr3R 4894863 4894888 rover 9 7376 0.5 4.0 2.2 2.8 7401 chr3R 4887487 intergenic not near genes chr3R 4891188 intergenic not near genes chr3R 4894888 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-228 752 chr3R 4966008 4966034 chr3R 4966100 4966119 6 90 0.5 2.5 1.5 2.4 111 chr3R 4966008 intron CG1124 + chr3R 4966064 intron CG1124 + chr3R 4966119 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-228 753 chr3R 5067984 5068005 chr3R 5073501 5073522 mdg3 5 5517 2.0 2.0 2.0 1.7 5538 chr3R 5067984 intergenic not near genes chr3R 5070753 intergenic not near genes chr3R 5073522 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-228 754 chr3R 5191364 5191395 chr3R 5191640 5191671 8 276 20.0 16.0 18.0 0.4 307 chr3R 5191364 intron cno - chr3R 5191518 intron cno - chr3R 5191671 intron cno - chr3R_8_5190001 chr3R_5190001 RAL-228 755 chr3R 5278091 5278123 chr3R 5278172 5278204 13 81 3.0 2.5 2.8 3.4 113 chr3R 5278091 intron mtd - chr3R 5278148 intron mtd - chr3R 5278204 intron mtd - chr3R_13_5275001 chr3R_5275001 RAL-228 756 chr3R 5282985 5282992 chr3R 5283068 5283074 4 82 8.5 5.0 6.8 0.5 89 chr3R 5282985 intron mtd - chr3R 5283030 intron mtd - chr3R 5283074 intron mtd - chr3R_4_5280001 chr3R_5280001 RAL-228 757 chr3R 5338400 5338425 chr3R 5343577 5343588 Rt1c 7 5175 2.5 8.0 5.2 1.1 5188 chr3R 5338400 intron mtd - chr3R 5340994 intron mtd - chr3R 5343588 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-228 758 chr3R 5365338 5365346 chr3R 5367006 5367014 NOF 4 1668 4.0 3.5 3.8 0.8 1676 chr3R 5365338 intron Cerk - chr3R 5366176 intron Cerk - chr3R 5367014 intron Cerk - chr3R_4_5365001 chr3R_5365001 RAL-228 759 chr3R 5367148 5367178 chr3R 5367272 5367276 8 119 1.0 1.5 1.2 3.6 128 chr3R 5367148 intron Cerk - chr3R 5367212 intron Cerk - chr3R 5367276 intron Cerk - chr3R_8_5365001 chr3R_5365001 RAL-228 760 chr3R 5746013 5746046 chr3R 5746254 5746287 pogo 6 241 2.0 0.5 1.2 2.7 274 chr3R 5746013 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-228 761 chr3R 5822378 5822411 chr3R 5823545 5823575 1360 5 1166 2.5 2.0 2.2 1.6 1197 chr3R 5822378 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823575 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-228 762 chr3R 5840826 5840849 chr3R 5840912 5840938 13 88 6.0 2.5 4.2 2.5 112 chr3R 5840826 intergenic CG1213 + chr3R 5840882 intergenic CG1213 + chr3R 5840938 intergenic CG1213 + chr3R_13_5840001 chr3R_5840001 RAL-228 763 chr3R 5927563 5927579 chr3R 5927801 5927819 pogo 6 240 4.0 2.0 3.0 1.5 256 chr3R 5927563 intron CG34113 - chr3R 5927691 intron CG34113 - chr3R 5927819 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-228 764 chr3R 6015969 6015994 chr3R 6024450 6024475 Tirant 8 8478 2.0 4.0 3.0 2.0 8506 chr3R 6015969 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024475 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-228 765 chr3R 6043644 6043673 chr3R 6043866 6043895 5 222 2.0 2.5 2.2 1.6 251 chr3R 6043644 intergenic not near genes chr3R 6043770 intergenic not near genes chr3R 6043895 intergenic not near genes chr3R_5_6040001 chr3R_6040001 RAL-228 766 chr3R 6158510 6158530 chr3R 6167092 6167112 Tirant 6 8582 3.5 0.5 2.0 2.0 8602 chr3R 6158510 intergenic not near genes chr3R 6162811 intergenic not near genes chr3R 6167112 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-228 767 chr3R 6428812 6428844 chr3R 6428914 6428946 5 102 0.0 1.5 0.8 2.8 134 chr3R 6428812 intron gpp + chr3R 6428879 intron gpp + chr3R 6428946 intron gpp + chr3R_5_6425001 chr3R_6425001 RAL-228 768 chr3R 6543835 6543865 chr3R 6543912 6543941 9 76 2.0 4.5 3.2 2.1 106 chr3R 6543835 intron dpr11 - chr3R 6543888 intron dpr11 - chr3R 6543941 intron dpr11 - chr3R_9_6540001 chr3R_6540001 RAL-228 769 chr3R 6684691 6684713 chr3R 6684781 6684783 5 85 6.0 3.5 4.8 0.9 92 chr3R 6684691 exon Edg84A + chr3R 6684737 exon Edg84A + chr3R 6684783 exon Edg84A + chr3R_5_6680001 chr3R_6680001 RAL-228 770 chr3R 6737504 6737531 chr3R 6739291 6739318 Doc 7 1786 2.0 1.0 1.5 2.8 1814 chr3R 6737504 intron pb - chr3R 6738411 intron pb - chr3R 6739318 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-228 771 chr3R 6862226 6862252 chr3R 6862313 6862337 7 87 1.5 0.0 0.8 3.9 111 chr3R 6862226 intergenic not near genes chr3R 6862282 intergenic not near genes chr3R 6862337 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-228 772 chr3R 6866377 6866400 chr3R 6866686 6866709 4 309 1.0 3.0 2.0 1.3 332 chr3R 6866377 intergenic ftz + chr3R 6866543 intergenic ftz + chr3R 6866709 intergenic ftz + chr3R_4_6865001 chr3R_6865001 RAL-228 773 chr3R 6891266 6891353 chr3R 6891342 6891551 4 166 1.5 1.5 1.5 1.6 285 chr3R 6891266 intergenic not near genes chr3R 6891408 intergenic not near genes chr3R 6891551 intergenic not near genes chr3R_4_6890001 chr3R_6890001 RAL-228 774 chr3R 7103290 7103317 chr3R 7103360 7103377 11 72 2.5 0.5 1.5 4.4 87 chr3R 7103290 intron Alh - chr3R 7103334 intron Alh - chr3R 7103377 intron Alh - chr3R_11_7100001 chr3R_7100001 RAL-228 775 chr3R 7210609 7210617 chr3R 7210695 7210703 5 86 0.0 1.5 0.8 2.8 94 chr3R 7210609 intergenic not near genes chr3R 7210656 intergenic not near genes chr3R 7210703 intergenic not near genes chr3R_5_7210001 chr3R_7210001 RAL-228 776 chr3R 7511776 7511795 chr3R 7511856 7511876 6 81 1.0 3.0 2.0 2.0 100 chr3R 7511776 intron alpha-Est8 - chr3R 7511826 intron alpha-Est8 - chr3R 7511876 intron alpha-Est8 - chr3R_6_7510001 chr3R_7510001 RAL-228 777 chr3R 7621549 7621563 chr3R 7621639 7621652 4 90 0.0 3.5 1.8 1.4 103 chr3R 7621549 intron CG34127 - chr3R 7621600 intron CG34127 - chr3R 7621652 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-228 778 chr3R 7665934 7665950 chr3R 7666016 7666038 7 86 0.0 2.5 1.2 3.2 104 chr3R 7665934 intron Nlg1 + chr3R 7665986 intron Nlg1 + chr3R 7666038 intron Nlg1 + chr3R_7_7665001 chr3R_7665001 RAL-228 779 chr3R 7884665 7884701 chr3R 7884743 7884776 6 78 2.5 1.0 1.8 2.1 111 chr3R 7884665 intron CG17816 - chr3R 7884720 intron CG17816 - chr3R 7884776 intron CG17816 - chr3R_6_7880001 chr3R_7880001 RAL-228 780 chr3R 8075205 8075224 chr3R 8075322 8075342 4 118 5.5 1.5 3.5 0.9 137 chr3R 8075205 intron mAChR-B + chr3R 8075274 intron mAChR-B + chr3R 8075342 intron mAChR-B + chr3R_4_8075001 chr3R_8075001 RAL-228 781 chr3R 8101768 8101792 chr3R 8104847 8104876 G2 6 3083 2.5 0.0 1.2 2.7 3108 chr3R 8101768 exon CG7900 + chr3R 8103322 intron CG7900 + chr3R 8104876 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-228 782 chr3R 8107400 8107412 chr3R 8107534 8107546 4 134 2.5 2.5 2.5 1.1 146 chr3R 8107400 intron puc + chr3R 8107473 intron puc + chr3R 8107546 intron puc + chr3R_4_8105001 chr3R_8105001 RAL-228 783 chr3R 8182659 8182682 chr3R 8182749 8182776 4 93 1.5 3.5 2.5 1.1 117 chr3R 8182659 intergenic not near genes chr3R 8182718 intergenic not near genes chr3R 8182776 intergenic not near genes chr3R_4_8180001 chr3R_8180001 RAL-228 784 chr3R 8207558 8207587 chr3R 8208403 8208430 F-element 4 844 1.0 3.0 2.0 1.3 872 chr3R 8207558 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-228 785 chr3R 8339246 8339246 chr3R 21907534 21907535 12 13568289 6.0 12.5 9.2 1.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_12_15120001 chr3R_15120001 RAL-228 786 chr3R 8339247 8339247 chr3R 21907535 21907536 8 13568288 6.0 13.0 9.5 0.8 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-228 787 chr3R 8403011 8403036 chr3R 8412177 8412198 roo 11 9165 4.0 4.5 4.2 2.1 9187 chr3R 8403011 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412198 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-228 788 chr3R 8426191 8426225 chr3R 8426276 8426289 9 80 3.0 2.0 2.5 2.6 98 chr3R 8426191 intron CG45263 - chr3R 8426240 intron CG45263 - chr3R 8426289 intron CG45263 - chr3R_9_8425001 chr3R_8425001 RAL-228 789 chr3R 8570479 8570507 chr3R 8575115 8575143 HMS-Beagle 13 4635 2.0 1.5 1.8 4.6 4664 chr3R 8570479 intergenic not near genes chr3R 8572811 intergenic not near genes chr3R 8575143 intergenic not near genes chr3R_13_8570001 chr3R_8570001 RAL-228 790 chr3R 8576167 8576189 chr3R 8576338 8576360 4 171 0.5 1.0 0.8 2.2 193 chr3R 8576167 intergenic not near genes chr3R 8576264 intergenic not near genes chr3R 8576360 intergenic not near genes chr3R_4_8575001 chr3R_8575001 RAL-228 791 chr3R 8601768 8601796 chr3R 8610920 8610949 roo 7 9149 3.0 2.0 2.5 2.0 9181 chr3R 8601768 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610949 intron 5-HT2B + chr3R_7_8605001 chr3R_8605001 RAL-228 792 chr3R 8631511 8631538 chr3R 8631615 8631641 9 104 2.0 2.5 2.2 2.8 130 chr3R 8631511 intergenic not near genes chr3R 8631576 intergenic not near genes chr3R 8631641 intergenic not near genes chr3R_9_8630001 chr3R_8630001 RAL-228 793 chr3R 8707359 8707384 chr3R 8709800 8709825 jockey 4 2440 3.5 2.5 3.0 1.0 2466 chr3R 8707359 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709825 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-228 794 chr3R 8798657 8798686 chr3R 8798740 8798765 7 80 1.5 1.5 1.5 2.8 108 chr3R 8798657 intron,intron Pif1A -,Pif1B - chr3R 8798711 intron,intron Pif1A -,Pif1B - chr3R 8798765 intron,intron Pif1A -,Pif1B - chr3R_7_8795001 chr3R_8795001 RAL-228 795 chr3R 8843514 8843534 chr3R 8843726 8843746 5 212 1.5 3.0 2.2 1.6 232 chr3R 8843514 intron pyd - chr3R 8843630 intron pyd - chr3R 8843746 intron pyd - chr3R_5_8840001 chr3R_8840001 RAL-228 796 chr3R 8976759 8976786 chr3R 8976843 8976870 4 84 0.5 1.5 1.0 2.0 111 chr3R 8976759 intergenic not near genes chr3R 8976814 intergenic not near genes chr3R 8976870 intergenic not near genes chr3R_4_8975001 chr3R_8975001 RAL-228 797 chr3R 9204250 9204280 chr3R 9204336 9204367 8 84 3.5 3.5 3.5 1.8 117 chr3R 9204250 intron pum - chr3R 9204308 intron pum - chr3R 9204367 intron pum - chr3R_8_9200001 chr3R_9200001 RAL-228 798 chr3R 9278781 9278809 chr3R 9284041 9284066 Rt1a 5 5259 1.0 3.5 2.2 1.6 5285 chr3R 9278781 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284066 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-228 799 chr3R 9319572 9319594 chr3R 9320007 9320029 jockey 5 435 2.0 1.0 1.5 2.0 457 chr3R 9319572 intron CG8861 - chr3R 9319800 intron CG8861 - chr3R 9320029 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-228 800 chr3R 9601461 9601483 chr3R 9601579 9601601 4 118 3.0 2.0 2.5 1.1 140 chr3R 9601461 intron CG8312 + chr3R 9601531 intron CG8312 + chr3R 9601601 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-228 801 chr3R 9620956 9620956 chr3R 21907535 21907536 6 12286580 10.0 13.0 11.5 0.5 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-228 802 chr3R 9628200 9628234 chr3R 9628407 9628439 9 202 1.5 2.5 2.0 3.0 239 chr3R 9628200 exon CG8319 + chr3R 9628320 exon CG8319 + chr3R 9628439 exon CG8319 + chr3R_9_9625001 chr3R_9625001 RAL-228 803 chr3R 9878022 9878027 chr3R 9878110 9878115 4 88 1.5 2.0 1.8 1.4 93 chr3R 9878022 intron,intron Glut4EF +,CR45029 - chr3R 9878068 intron,intron Glut4EF +,CR45029 - chr3R 9878115 intron,intron Glut4EF +,CR45029 - chr3R_4_9875001 chr3R_9875001 RAL-228 804 chr3R 10231800 10231811 chr3R 10237377 10237388 mdg3 4 5577 0.0 4.0 2.0 1.3 5588 chr3R 10231800 intron CG42795 + chr3R 10234594 intron CG42795 + chr3R 10237388 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-228 805 chr3R 10430673 10430708 chr3R 10430762 10430797 11 89 2.5 2.5 2.5 3.1 124 chr3R 10430673 intergenic not near genes chr3R 10430735 intergenic not near genes chr3R 10430797 intergenic not near genes chr3R_11_10430001 chr3R_10430001 RAL-228 806 chr3R 10492764 10492790 chr3R 10492852 10492855 6 84 0.5 2.0 1.2 2.7 91 chr3R 10492764 intergenic not near genes chr3R 10492810 intergenic not near genes chr3R 10492855 intergenic not near genes chr3R_6_10490001 chr3R_10490001 RAL-228 807 chr3R 10531869 10531895 chr3R 10531949 10531976 6 81 3.5 1.0 2.2 1.9 107 chr3R 10531869 intron hth - chr3R 10531922 intron hth - chr3R 10531976 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-228 808 chr3R 10641591 10641624 chr3R 10641671 10641704 5 79 1.5 1.5 1.5 2.0 113 chr3R 10641591 5` UTR CR44018 + chr3R 10641648 5` UTR CR44018 + chr3R 10641704 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-228 809 chr3R 10716427 10716463 chr3R 10716575 10716611 4 148 0.0 1.0 0.5 2.7 184 chr3R 10716427 intergenic not near genes chr3R 10716519 intergenic not near genes chr3R 10716611 intergenic not near genes chr3R_4_10715001 chr3R_10715001 RAL-228 810 chr3R 10723507 10723528 chr3R 10723591 10723612 6 84 3.0 3.0 3.0 1.5 105 chr3R 10723507 intergenic not near genes chr3R 10723560 intergenic not near genes chr3R 10723612 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-228 811 chr3R 10745428 10745451 chr3R 10745514 10745538 6 87 2.0 2.5 2.2 1.9 110 chr3R 10745428 intron TkR86C - chr3R 10745483 intron TkR86C - chr3R 10745538 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-228 812 chr3R 11025189 11025214 chr3R 11025342 11025361 7 152 1.0 2.0 1.5 2.8 172 chr3R 11025189 intron CG34114 + chr3R 11025275 intron CG34114 + chr3R 11025361 intron CG34114 + chr3R_7_11025001 chr3R_11025001 RAL-228 813 chr3R 11085461 11085492 chr3R 11085538 11085569 6 77 0.0 0.0 0.0 6.0 108 chr3R 11085461 3` UTR CR44940 - chr3R 11085515 intergenic CR44940 - chr3R 11085569 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-228 814 chr3R 11455231 11455268 chr3R 11455316 11455317 14 79 2.0 0.5 1.2 6.4 86 chr3R 11455231 intron,intron CG17230 +,PGRP-LB - chr3R 11455274 intron,intron CG17230 +,PGRP-LB - chr3R 11455317 intron,intron CG17230 +,PGRP-LB - chr3R_14_11455001 chr3R_11455001 RAL-228 815 chr3R 11518816 11518839 chr3R 11518907 11518930 9 91 2.0 3.5 2.8 2.4 114 chr3R 11518816 intergenic not near genes chr3R 11518873 intergenic not near genes chr3R 11518930 intergenic not near genes chr3R_9_11515001 chr3R_11515001 RAL-228 816 chr3R 11619010 11619043 chr3R 11619087 11619117 8 75 1.5 2.5 2.0 2.7 107 chr3R 11619010 intron Jupiter - chr3R 11619064 intron Jupiter - chr3R 11619117 intron Jupiter - chr3R_8_11615001 chr3R_11615001 RAL-228 817 chr3R 11670991 11671017 chr3R 11671069 11671095 6 78 1.0 1.0 1.0 3.0 104 chr3R 11670991 intron CG42327 + chr3R 11671043 intron CG42327 + chr3R 11671095 intron CG42327 + chr3R_6_11670001 chr3R_11670001 RAL-228 818 chr3R 11689726 11689751 chr3R 11689808 11689833 5 82 1.0 5.0 3.0 1.2 107 chr3R 11689726 exon CG6908 - chr3R 11689780 exon CG6908 - chr3R 11689833 exon CG6908 - chr3R_5_11685001 chr3R_11685001 RAL-228 819 chr3R 11710209 11710236 chr3R 11710286 11710314 15 78 3.0 4.0 3.5 3.3 105 chr3R 11710209 intergenic not near genes chr3R 11710262 intergenic not near genes chr3R 11710314 intergenic not near genes chr3R_15_11710001 chr3R_11710001 RAL-228 820 chr3R 11719227 11719252 chr3R 11719306 11719332 5 80 1.5 2.0 1.8 1.8 105 chr3R 11719227 intergenic not near genes chr3R 11719280 intergenic not near genes chr3R 11719332 intergenic not near genes chr3R_5_11715001 chr3R_11715001 RAL-228 821 chr3R 11720393 11720412 chr3R 11720476 11720495 4 83 0.0 0.0 0.0 4.0 102 chr3R 11720393 intergenic not near genes chr3R 11720444 intergenic not near genes chr3R 11720495 intergenic not near genes chr3R_4_11720001 chr3R_11720001 RAL-228 822 chr3R 11734166 11734188 chr3R 11734279 11734306 6 116 1.0 0.5 0.8 3.3 140 chr3R 11734166 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734306 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-228 823 chr3R 11841062 11841092 chr3R 11846253 11846283 BS 12 5191 4.5 1.5 3.0 3.0 5221 chr3R 11841062 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846283 intron CG6959 - chr3R_12_11840001 chr3R_11840001 RAL-228 824 chr3R 11853454 11853465 chr3R 11853601 11853612 4 147 1.0 2.5 1.8 1.4 158 chr3R 11853454 intron CG6959 - chr3R 11853533 intron CG6959 - chr3R 11853612 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-228 825 chr3R 11853772 11853793 chr3R 11853877 11853898 5 105 2.5 2.5 2.5 1.4 126 chr3R 11853772 intron CG6959 - chr3R 11853835 intron CG6959 - chr3R 11853898 intron CG6959 - chr3R_5_11850001 chr3R_11850001 RAL-228 826 chr3R 11916436 11916462 chr3R 11916503 11916541 6 77 1.0 1.5 1.2 2.7 105 chr3R 11916436 intron Cad87A - chr3R 11916488 intron Cad87A - chr3R 11916541 intron Cad87A - chr3R_6_11915001 chr3R_11915001 RAL-228 827 chr3R 12022884 12022914 chr3R 12025061 12025091 pogo 7 2177 2.0 1.5 1.8 2.5 2207 chr3R 12022884 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025091 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-228 828 chr3R 12080865 12080891 chr3R 12080942 12080969 4 77 2.0 1.5 1.8 1.4 104 chr3R 12080865 intron CG14741 - chr3R 12080917 intron CG14741 - chr3R 12080969 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-228 829 chr3R 12214359 12214372 chr3R 12214432 12214463 6 87 3.0 1.5 2.2 1.9 104 chr3R 12214359 3` UTR CG4848 - chr3R 12214411 3` UTR CG4848 - chr3R 12214463 3` UTR CG4848 - chr3R_6_12210001 chr3R_12210001 RAL-228 830 chr3R 12299810 12299832 chr3R 12299903 12299925 7 92 4.0 2.5 3.2 1.7 115 chr3R 12299810 intron svp + chr3R 12299868 intron svp + chr3R 12299925 intron svp + chr3R_7_12295001 chr3R_12295001 RAL-228 831 chr3R 12314224 12314261 chr3R 12314337 12314353 8 107 3.0 2.0 2.5 2.3 129 chr3R 12314224 intergenic not near genes chr3R 12314288 intergenic not near genes chr3R 12314353 intergenic not near genes chr3R_8_12310001 chr3R_12310001 RAL-228 832 chr3R 12436458 12436473 chr3R 12436544 12436560 6 86 7.0 4.0 5.5 0.9 102 chr3R 12436458 exon Desat2 + chr3R 12436509 exon Desat2 + chr3R 12436560 exon Desat2 + chr3R_6_12435001 chr3R_12435001 RAL-228 833 chr3R 12520691 12520720 chr3R 12520778 12520801 10 86 3.5 3.0 3.2 2.4 110 chr3R 12520691 intron Octbeta3R - chr3R 12520746 intron Octbeta3R - chr3R 12520801 intron Octbeta3R - chr3R_10_12520001 chr3R_12520001 RAL-228 834 chr3R 12522352 12522383 chr3R 12522438 12522469 10 83 6.0 3.0 4.5 1.8 117 chr3R 12522352 5` UTR Octbeta3R - chr3R 12522410 5` UTR Octbeta3R - chr3R 12522469 5` UTR Octbeta3R - chr3R_10_12520001 chr3R_12520001 RAL-228 835 chr3R 12602395 12602418 chr3R 12602473 12602496 8 78 4.5 3.0 3.8 1.7 101 chr3R 12602395 intergenic not near genes chr3R 12602446 intergenic not near genes chr3R 12602496 intergenic not near genes chr3R_8_12600001 chr3R_12600001 RAL-228 836 chr3R 12628619 12628631 chr3R 12628698 12628714 6 81 7.5 4.5 6.0 0.9 95 chr3R 12628619 intron Snx3 + chr3R 12628666 intron Snx3 + chr3R 12628714 intron Snx3 + chr3R_6_12625001 chr3R_12625001 RAL-228 837 chr3R 12685419 12685446 chr3R 12685593 12685596 6 170 1.0 2.0 1.5 2.4 177 chr3R 12685419 intron kar - chr3R 12685508 intron kar - chr3R 12685596 intron kar - chr3R_6_12685001 chr3R_12685001 RAL-228 838 chr3R 12733483 12733504 chr3R 12733560 12733581 4 76 2.5 5.5 4.0 0.8 98 chr3R 12733483 intergenic not near genes chr3R 12733532 intergenic not near genes chr3R 12733581 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-228 839 chr3R 12920151 12920185 chr3R 12925354 12925388 copia 4 5203 2.0 3.0 2.5 1.1 5237 chr3R 12920151 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925388 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-228 840 chr3R 13114398 13114422 chr3R 13114492 13114511 7 87 5.0 1.5 3.2 1.7 113 chr3R 13114398 intron timeout + chr3R 13114454 intron timeout + chr3R 13114511 intron timeout + chr3R_7_13110001 chr3R_13110001 RAL-228 841 chr3R 13143042 13143065 chr3R 13148618 13148639 mdg3 6 5574 2.5 3.5 3.0 1.5 5597 chr3R 13143042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148639 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-228 842 chr3R 13171905 13171928 chr3R 13172815 13172838 4 911 19.5 5.0 12.2 0.3 933 chr3R 13171905 intergenic not near genes chr3R 13172372 intergenic not near genes chr3R 13172838 intergenic not near genes chr3R_4_13170001 chr3R_13170001 RAL-228 843 chr3R 13173449 13173475 chr3R 13173531 13173557 6 82 0.5 2.5 1.5 2.4 108 chr3R 13173449 intergenic not near genes chr3R 13173503 intergenic not near genes chr3R 13173557 intergenic not near genes chr3R_6_13170001 chr3R_13170001 RAL-228 844 chr3R 13195950 13195979 chr3R 13196045 13196074 7 95 2.5 1.5 2.0 2.3 124 chr3R 13195950 intergenic not near genes chr3R 13196012 intergenic not near genes chr3R 13196074 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-228 845 chr3R 13274220 13274247 chr3R 13274297 13274326 5 76 2.5 3.0 2.8 1.3 106 chr3R 13274220 intergenic not near genes chr3R 13274273 intergenic not near genes chr3R 13274326 intergenic not near genes chr3R_5_13270001 chr3R_13270001 RAL-228 846 chr3R 13306122 13306144 chr3R 13306509 13306530 6 387 0.5 0.5 0.5 4.0 408 chr3R 13306122 intron CG32473 + chr3R 13306326 intron CG32473 + chr3R 13306530 intron CG32473 + chr3R_6_13305001 chr3R_13305001 RAL-228 847 chr3R 13470843 13470870 chr3R 13471172 13471199 9 329 2.0 0.5 1.2 4.1 356 chr3R 13470843 intergenic not near genes chr3R 13471021 intergenic not near genes chr3R 13471199 intergenic not near genes chr3R_9_13470001 chr3R_13470001 RAL-228 848 chr3R 13693028 13693028 chr3R 21907534 21907536 11 8214507 10.5 12.5 11.5 0.9 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_11_17800001 chr3R_17800001 RAL-228 849 chr3R 13782072 13782085 chr3R 13782153 13782166 4 81 1.5 1.5 1.5 1.6 94 chr3R 13782072 3` UTR CG9286 + chr3R 13782119 intergenic CG9286 +,Dip-B + chr3R 13782166 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-228 850 chr3R 13863678 13863690 chr3R 13863766 13863776 5 88 3.0 2.0 2.5 1.4 98 chr3R 13863678 intergenic not near genes chr3R 13863727 intergenic not near genes chr3R 13863776 intergenic not near genes chr3R_5_13860001 chr3R_13860001 RAL-228 851 chr3R 13988269 13988294 chr3R 13988355 13988379 6 85 3.0 1.0 2.0 2.0 110 chr3R 13988269 intron rdx - chr3R 13988324 intron rdx - chr3R 13988379 intron rdx - chr3R_6_13985001 chr3R_13985001 RAL-228 852 chr3R 14083419 14083436 chr3R 14083519 14083536 4 100 2.5 0.0 1.2 1.8 117 chr3R 14083419 intron foxo + chr3R 14083478 intron foxo + chr3R 14083536 intron foxo + chr3R_4_14080001 chr3R_14080001 RAL-228 853 chr3R 14117443 14117468 chr3R 14117516 14117544 4 75 0.5 1.0 0.8 2.2 101 chr3R 14117443 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117544 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-228 854 chr3R 14258196 14258212 chr3R 14258276 14258291 6 80 0.0 4.5 2.2 1.9 95 chr3R 14258196 intron Aats-met - chr3R 14258244 intron Aats-met - chr3R 14258291 intron Aats-met - chr3R_6_14255001 chr3R_14255001 RAL-228 855 chr3R 14458893 14458910 chr3R 14458974 14458991 8 80 0.0 1.5 0.8 4.4 98 chr3R 14458893 intron cv-c - chr3R 14458942 intron cv-c - chr3R 14458991 intron cv-c - chr3R_8_14455001 chr3R_14455001 RAL-228 856 chr3R 14520454 14520473 chr3R 14520549 14520573 6 99 0.0 2.5 1.2 2.7 119 chr3R 14520454 intron Pde6 - chr3R 14520514 intron Pde6 - chr3R 14520573 intron Pde6 - chr3R_6_14520001 chr3R_14520001 RAL-228 857 chr3R 14527373 14527380 chr3R 14527470 14527477 4 97 7.0 1.5 4.2 0.8 104 chr3R 14527373 intron Pde6 - chr3R 14527425 intron Pde6 - chr3R 14527477 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-228 858 chr3R 14560662 14560687 chr3R 14560857 14560882 4 195 0.0 1.0 0.5 2.7 220 chr3R 14560662 intergenic CG14850 + chr3R 14560772 intergenic CG14850 + chr3R 14560882 intergenic CG14850 + chr3R_4_14560001 chr3R_14560001 RAL-228 859 chr3R 14577957 14577989 chr3R 14578073 14578105 5 116 0.5 1.5 1.0 2.5 148 chr3R 14577957 intron stumps + chr3R 14578031 intron stumps + chr3R 14578105 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-228 860 chr3R 14579358 14579379 chr3R 14579447 14579468 6 88 3.5 1.0 2.2 1.9 110 chr3R 14579358 intron stumps + chr3R 14579413 intron stumps + chr3R 14579468 intron stumps + chr3R_6_14575001 chr3R_14575001 RAL-228 861 chr3R 14617031 14617040 chr3R 14617107 14617116 4 76 1.5 0.5 1.0 2.0 85 chr3R 14617031 intron CG14853 + chr3R 14617074 intron CG14853 + chr3R 14617116 intron CG14853 + chr3R_4_14615001 chr3R_14615001 RAL-228 862 chr3R 14662317 14662340 chr3R 14662398 14662421 7 81 1.5 4.0 2.8 1.8 104 chr3R 14662317 intron Rad17 - chr3R 14662369 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_7_14660001 chr3R_14660001 RAL-228 863 chr3R 14709329 14709344 chr3R 14709400 14709427 5 80 2.5 2.0 2.2 1.6 98 chr3R 14709329 intron kibra - chr3R 14709378 intron kibra - chr3R 14709427 intron kibra - chr3R_5_14705001 chr3R_14705001 RAL-228 864 chr3R 14847476 14847492 chr3R 14847700 14847729 6 229 0.5 2.5 1.5 2.4 253 chr3R 14847476 intron btsz - chr3R 14847602 intron btsz - chr3R 14847729 intron btsz - chr3R_6_14845001 chr3R_14845001 RAL-228 865 chr3R 14874122 14874147 chr3R 14874209 14874234 6 87 2.0 6.0 4.0 1.2 112 chr3R 14874122 intron btsz - chr3R 14874178 intron btsz - chr3R 14874234 intron btsz - chr3R_6_14870001 chr3R_14870001 RAL-228 866 chr3R 15006862 15006880 chr3R 15007241 15007259 7 379 6.0 3.0 4.5 1.3 397 chr3R 15006862 intergenic not near genes chr3R 15007060 intergenic not near genes chr3R 15007259 intergenic not near genes chr3R_7_15005001 chr3R_15005001 RAL-228 867 chr3R 15006885 15006892 chr3R 15007240 15007271 5 374 3.5 3.0 3.2 1.2 386 chr3R 15006885 intergenic not near genes chr3R 15007078 intergenic not near genes chr3R 15007271 intergenic not near genes chr3R_5_15005001 chr3R_15005001 RAL-228 868 chr3R 15037004 15037038 chr3R 15037085 15037121 6 83 2.0 1.5 1.8 2.1 117 chr3R 15037004 intergenic RpL10Aa + chr3R 15037062 intergenic RpL10Aa + chr3R 15037121 intergenic RpL10Aa + chr3R_6_15035001 chr3R_15035001 RAL-228 869 chr3R 15041434 15041447 chr3R 15045201 15045215 Doc 4 3768 0.0 0.0 0.0 4.0 3781 chr3R 15041434 intergenic not near genes chr3R 15043324 intergenic not near genes chr3R 15045215 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-228 870 chr3R 15049466 15049488 chr3R 15049592 15049614 7 124 1.5 6.0 3.8 1.5 148 chr3R 15049466 intergenic not near genes chr3R 15049540 intergenic not near genes chr3R 15049614 intergenic not near genes chr3R_7_15045001 chr3R_15045001 RAL-228 871 chr3R 15071186 15071215 chr3R 15071311 15071340 7 125 2.0 2.5 2.2 2.2 154 chr3R 15071186 intron dpr9 - chr3R 15071263 intron dpr9 - chr3R 15071340 intron dpr9 - chr3R_7_15070001 chr3R_15070001 RAL-228 872 chr3R 15079827 15079834 chr3R 15080068 15080074 pogo 4 241 0.5 0.0 0.2 3.3 247 chr3R 15079827 3` UTR CG6966 - chr3R 15079950 3` UTR CG6966 - chr3R 15080074 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-228 873 chr3R 15132067 15132078 chr3R 15135125 15135138 Juan 5 3060 2.0 2.0 2.0 1.7 3071 chr3R 15132067 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135138 3` UTR CG6912 - chr3R_5_15130001 chr3R_15130001 RAL-228 874 chr3R 15156611 15156635 chr3R 15156692 15156716 5 81 2.0 0.0 1.0 2.5 105 chr3R 15156611 intron Gyc88E + chr3R 15156664 intron Gyc88E + chr3R 15156716 intron Gyc88E + chr3R_5_15155001 chr3R_15155001 RAL-228 875 chr3R 15167812 15167835 chr3R 15167969 15167991 6 157 2.5 3.0 2.8 1.6 179 chr3R 15167812 intron Gyc88E + chr3R 15167902 intron Gyc88E + chr3R 15167991 intron Gyc88E + chr3R_6_15165001 chr3R_15165001 RAL-228 876 chr3R 15286987 15286988 chr3R 21907534 21907536 6 6620548 12.5 12.5 12.5 0.4 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-228 877 chr3R 15601164 15601194 chr3R 15608686 15608716 412 5 7522 5.5 2.0 3.8 1.0 7552 chr3R 15601164 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-228 878 chr3R 15691183 15691314 chr3R 15691286 15691401 4 91 0.0 0.0 0.0 4.0 218 chr3R 15691183 intergenic not near genes chr3R 15691292 intergenic not near genes chr3R 15691401 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-228 879 chr3R 15813327 15813357 chr3R 15813412 15813442 8 85 1.5 0.5 1.0 4.0 115 chr3R 15813327 intron alpha-Man-IIb + chr3R 15813384 intron alpha-Man-IIb + chr3R 15813442 intron alpha-Man-IIb + chr3R_8_15810001 chr3R_15810001 RAL-228 880 chr3R 15990420 15990452 chr3R 15990497 15990529 7 76 4.5 4.5 4.5 1.3 109 chr3R 15990420 intron,intron srp +,CR44133 + chr3R 15990474 intron,intron srp +,CR44133 + chr3R 15990529 intron,intron srp +,CR44133 + chr3R_7_15990001 chr3R_15990001 RAL-228 881 chr3R 16073446 16073464 chr3R 16073550 16073568 4 104 4.0 1.0 2.5 1.1 122 chr3R 16073446 intron Mhcl - chr3R 16073507 intron Mhcl - chr3R 16073568 intron Mhcl - chr3R_4_16070001 chr3R_16070001 RAL-228 882 chr3R 16190918 16190927 chr3R 16192839 16192848 4 1921 5.0 3.0 4.0 0.8 1930 chr3R 16190918 intron sra + chr3R 16191883 intron sra + chr3R 16192848 intron sra + chr3R_4_16190001 chr3R_16190001 RAL-228 883 chr3R 16472584 16472600 chr3R 16472652 16472666 4 72 4.5 3.0 3.8 0.8 82 chr3R 16472584 intergenic Gyc-89Da + chr3R 16472625 5` UTR Gyc-89Da + chr3R 16472666 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-228 884 chr3R 16537511 16537542 chr3R 16537597 16537627 5 86 0.5 1.0 0.8 2.8 116 chr3R 16537511 intron CG42342 + chr3R 16537569 intron CG42342 + chr3R 16537627 intron CG42342 + chr3R_5_16535001 chr3R_16535001 RAL-228 885 chr3R 16756320 16756352 chr3R 16762511 16762543 diver 8 6191 2.5 2.0 2.2 2.5 6223 chr3R 16756320 intron bxd - chr3R 16759432 intron bxd - chr3R 16762543 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-228 886 chr3R 16774195 16774229 chr3R 16774301 16774333 10 105 0.5 1.0 0.8 5.6 138 chr3R 16774195 intergenic not near genes chr3R 16774264 intergenic not near genes chr3R 16774333 intergenic not near genes chr3R_10_16770001 chr3R_16770001 RAL-228 887 chr3R 17234086 17234109 chr3R 17234167 17234189 4 80 2.0 2.0 2.0 1.3 103 chr3R 17234086 intron beat-IIb - chr3R 17234138 intron beat-IIb - chr3R 17234189 intron beat-IIb - chr3R_4_17230001 chr3R_17230001 RAL-228 888 chr3R 17290443 17290462 chr3R 17290529 17290548 5 86 1.5 2.5 2.0 1.7 105 chr3R 17290443 intergenic not near genes chr3R 17290496 intergenic not near genes chr3R 17290548 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-228 889 chr3R 17346247 17346247 chr3R 21907534 21907535 4 4561288 11.0 12.5 11.8 0.3 4561288 chr3R 17346247 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907535 intergenic CG6678 + chr3R_4_19625001 chr3R_19625001 RAL-228 890 chr3R 17461204 17461210 chr3R 17461286 17461292 4 82 3.5 0.0 1.8 1.4 88 chr3R 17461204 intergenic not near genes chr3R 17461248 intergenic not near genes chr3R 17461292 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-228 891 chr3R 17467504 17467517 chr3R 17467589 17467602 6 83 4.0 4.5 4.2 1.2 98 chr3R 17467504 intergenic not near genes chr3R 17467553 intergenic not near genes chr3R 17467602 intergenic not near genes chr3R_6_17465001 chr3R_17465001 RAL-228 892 chr3R 17521582 17521588 chr3R 17521715 17521748 8 154 1.0 3.5 2.2 2.5 166 chr3R 17521582 intergenic not near genes chr3R 17521665 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_8_17520001 chr3R_17520001 RAL-228 893 chr3R 17554352 17554386 chr3R 17554629 17554663 11 277 2.5 5.0 3.8 2.3 311 chr3R 17554352 intergenic not near genes chr3R 17554508 intergenic not near genes chr3R 17554663 intergenic not near genes chr3R_11_17550001 chr3R_17550001 RAL-228 894 chr3R 17655864 17655880 chr3R 17655950 17655966 4 86 3.5 2.5 3.0 1.0 102 chr3R 17655864 intron CG14322 + chr3R 17655915 intron CG14322 + chr3R 17655966 intron CG14322 + chr3R_4_17655001 chr3R_17655001 RAL-228 895 chr3R 17775562 17775594 chr3R 17775690 17775701 5 124 2.0 1.0 1.5 2.0 139 chr3R 17775562 intron CG43102 - chr3R 17775632 intron CG43102 - chr3R 17775701 intron CG43102 - chr3R_5_17775001 chr3R_17775001 RAL-228 896 chr3R 17830119 17830147 chr3R 17830207 17830235 9 87 2.0 4.5 3.2 2.1 116 chr3R 17830119 intron tinc + chr3R 17830177 intron tinc + chr3R 17830235 intron tinc + chr3R_9_17830001 chr3R_17830001 RAL-228 897 chr3R 17845204 17845212 chr3R 17845273 17845289 6 72 2.0 5.0 3.5 1.3 85 chr3R 17845204 intron tinc + chr3R 17845246 intron tinc + chr3R 17845289 intron tinc + chr3R_6_17845001 chr3R_17845001 RAL-228 898 chr3R 17854770 17854785 chr3R 17854847 17854863 6 78 2.0 1.0 1.5 2.4 93 chr3R 17854770 intron tinc + chr3R 17854816 intron tinc + chr3R 17854863 intron tinc + chr3R_6_17850001 chr3R_17850001 RAL-228 899 chr3R 17925853 17925886 chr3R 17927320 17927353 hobo 9 1465 1.0 5.0 3.0 2.2 1500 chr3R 17925853 intron cpo + chr3R 17926603 intron cpo + chr3R 17927353 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-228 900 chr3R 17964227 17964258 chr3R 17964333 17964350 6 104 3.0 1.5 2.2 1.9 123 chr3R 17964227 intron cpo + chr3R 17964288 intron cpo + chr3R 17964350 intron cpo + chr3R_6_17960001 chr3R_17960001 RAL-228 901 chr3R 18006450 18006459 chr3R 18006532 18006546 4 86 2.0 3.0 2.5 1.1 96 chr3R 18006450 intron cpo + chr3R 18006498 intron cpo + chr3R 18006546 intron cpo + chr3R_4_18005001 chr3R_18005001 RAL-228 902 chr3R 18061581 18061608 chr3R 18063149 18063176 F-element 4 1568 1.0 0.0 0.5 2.7 1595 chr3R 18061581 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063176 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-228 903 chr3R 18126209 18126230 chr3R 18126288 18126309 5 79 2.5 2.5 2.5 1.4 100 chr3R 18126209 intron sr + chr3R 18126259 intron sr + chr3R 18126309 intron sr + chr3R_5_18125001 chr3R_18125001 RAL-228 904 chr3R 18250795 18250804 chr3R 18250872 18250881 4 77 1.0 3.5 2.2 1.2 86 chr3R 18250795 intergenic 14-3-3epsilon +,CG18598 + chr3R 18250838 intergenic CG18598 +,14-3-3epsilon + chr3R 18250881 intergenic CG18598 +,14-3-3epsilon + chr3R_4_18250001 chr3R_18250001 RAL-228 905 chr3R 18299267 18299268 chr3R 18302641 18302661 6 3375 11.5 23.0 17.2 0.3 3394 chr3R 18299267 5` UTR Dlc90F + chr3R 18300964 exon CG18600 - chr3R 18302661 exon CG7126 - chr3R_6_18300001 chr3R_18300001 RAL-228 906 chr3R 18501592 18501622 chr3R 18501673 18501703 5 81 0.5 2.0 1.2 2.3 111 chr3R 18501592 intron fru - chr3R 18501648 intron fru - chr3R 18501703 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-228 907 chr3R 18575574 18575605 chr3R 18575656 18575689 14 80 3.5 2.5 3.0 3.5 115 chr3R 18575574 intron,intron CG7694 +,fray + chr3R 18575632 intron,intron CG7694 +,fray + chr3R 18575689 intron,intron CG7694 +,fray + chr3R_14_18575001 chr3R_18575001 RAL-228 908 chr3R 18606510 18606532 chr3R 18610742 18610762 F-element 6 4232 2.0 0.0 1.0 3.0 4252 chr3R 18606510 intron,intron qin +,CG14304 - chr3R 18608636 intron,intron qin +,CG14304 - chr3R 18610762 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-228 909 chr3R 18612878 18612898 chr3R 18613358 18613378 4 480 0.0 0.5 0.2 3.3 500 chr3R 18612878 intron,intron qin +,CG14304 - chr3R 18613128 intron,intron qin +,CG14304 - chr3R 18613378 intron,intron qin +,CG14304 - chr3R_4_18610001 chr3R_18610001 RAL-228 910 chr3R 18618272 18618290 chr3R 18618357 18618375 4 85 0.5 0.5 0.5 2.7 103 chr3R 18618272 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618375 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-228 911 chr3R 18781691 18781721 chr3R 18781767 18781797 5 73 3.5 1.0 2.2 1.6 106 chr3R 18781691 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781797 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-228 912 chr3R 18791499 18791520 chr3R 18791578 18791581 7 76 2.5 3.0 2.8 1.8 82 chr3R 18791499 intron CG7720 - chr3R 18791540 intron CG7720 - chr3R 18791581 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-228 913 chr3R 18808482 18808506 chr3R 18808550 18808582 6 71 0.5 1.5 1.0 3.0 100 chr3R 18808482 intron CG18208 - chr3R 18808532 intron CG18208 - chr3R 18808582 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-228 914 chr3R 18812075 18812101 chr3R 18812152 18812179 5 78 1.0 3.5 2.2 1.6 104 chr3R 18812075 intron CG18208 - chr3R 18812127 intron CG18208 - chr3R 18812179 intron CG18208 - chr3R_5_18810001 chr3R_18810001 RAL-228 915 chr3R 18836834 18836864 chr3R 18836944 18836974 8 110 0.5 1.0 0.8 4.4 140 chr3R 18836834 intron CG18208 - chr3R 18836904 intron CG18208 - chr3R 18836974 intron CG18208 - chr3R_8_18835001 chr3R_18835001 RAL-228 916 chr3R 18860129 18860159 chr3R 18860214 18860239 7 81 1.0 0.5 0.8 3.9 110 chr3R 18860129 intergenic not near genes chr3R 18860184 intergenic not near genes chr3R 18860239 intergenic not near genes chr3R_7_18860001 chr3R_18860001 RAL-228 917 chr3R 18888835 18888863 chr3R 18889169 18889198 11 334 1.0 5.0 3.0 2.8 363 chr3R 18888835 intergenic not near genes chr3R 18889016 intergenic not near genes chr3R 18889198 intergenic not near genes chr3R_11_18885001 chr3R_18885001 RAL-228 918 chr3R 18891264 18891289 chr3R 18891389 18891415 10 125 4.0 2.0 3.0 2.5 151 chr3R 18891264 intergenic not near genes chr3R 18891340 intergenic not near genes chr3R 18891415 intergenic not near genes chr3R_10_18890001 chr3R_18890001 RAL-228 919 chr3R 18932562 18932585 chr3R 18932737 18932759 13 175 3.0 3.5 3.2 3.1 197 chr3R 18932562 intron CG42613 + chr3R 18932660 intron CG42613 + chr3R 18932759 intron CG42613 + chr3R_13_18930001 chr3R_18930001 RAL-228 920 chr3R 19246665 19246682 chr3R 19246751 19246768 4 86 0.0 2.0 1.0 2.0 103 chr3R 19246665 intergenic CG5217 - chr3R 19246716 intergenic CG5217 - chr3R 19246768 intergenic CG5217 - chr3R_4_19245001 chr3R_19245001 RAL-228 921 chr3R 19352506 19352539 chr3R 19352591 19352624 6 81 4.0 0.5 2.2 1.9 118 chr3R 19352506 intergenic not near genes chr3R 19352565 intergenic not near genes chr3R 19352624 intergenic not near genes chr3R_6_19350001 chr3R_19350001 RAL-228 922 chr3R 19563717 19563741 chr3R 19563794 19563819 4 78 2.5 0.0 1.2 1.8 102 chr3R 19563717 intron Dys + chr3R 19563768 intron Dys + chr3R 19563819 intron Dys + chr3R_4_19560001 chr3R_19560001 RAL-228 923 chr3R 19914011 19914037 chr3R 19914104 19914130 7 93 2.5 0.5 1.5 2.8 119 chr3R 19914011 3` UTR RhoGAP92B + chr3R 19914070 3` UTR RhoGAP92B + chr3R 19914130 3` UTR RhoGAP92B + chr3R_7_19910001 chr3R_19910001 RAL-228 924 chr3R 19989846 19989878 chr3R 19989924 19989958 6 79 4.0 0.5 2.2 1.9 112 chr3R 19989846 intron Hs6st - chr3R 19989902 intron Hs6st - chr3R 19989958 intron Hs6st - chr3R_6_19985001 chr3R_19985001 RAL-228 925 chr3R 20266520 20266526 chr3R 20272991 20272997 Burdock 4 6471 0.5 0.5 0.5 2.7 6477 chr3R 20266520 intron cic + chr3R 20269758 intron cic + chr3R 20272997 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-228 926 chr3R 20506592 20506606 chr3R 20507395 20507409 BS 4 803 1.5 2.5 2.0 1.3 817 chr3R 20506592 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507409 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-228 927 chr3R 20516540 20516557 chr3R 20516896 20516913 4 356 1.5 3.0 2.2 1.2 373 chr3R 20516540 intergenic not near genes chr3R 20516726 intergenic not near genes chr3R 20516913 intergenic not near genes chr3R_4_20515001 chr3R_20515001 RAL-228 928 chr3R 20664228 20664256 chr3R 20664365 20664394 7 137 4.0 4.0 4.0 1.4 166 chr3R 20664228 intergenic not near genes chr3R 20664311 intergenic not near genes chr3R 20664394 intergenic not near genes chr3R_7_20660001 chr3R_20660001 RAL-228 929 chr3R 20675760 20675783 chr3R 20675864 20675887 6 104 2.0 2.0 2.0 2.0 127 chr3R 20675760 intergenic CG4000 - chr3R 20675824 intergenic CG4000 - chr3R 20675887 intergenic CG4000 - chr3R_6_20675001 chr3R_20675001 RAL-228 930 chr3R 20682555 20682591 chr3R 20682808 20682841 8 253 0.5 2.0 1.2 3.6 286 chr3R 20682555 intergenic not near genes chr3R 20682698 intergenic not near genes chr3R 20682841 intergenic not near genes chr3R_8_20680001 chr3R_20680001 RAL-228 931 chr3R 20777644 20777651 chr3R 20777719 20777734 4 81 4.0 1.5 2.8 1.1 90 chr3R 20777644 intron Syp + chr3R 20777689 intron Syp + chr3R 20777734 intron Syp + chr3R_4_20775001 chr3R_20775001 RAL-228 932 chr3R 20870254 20870283 chr3R 20870339 20870368 9 85 1.5 6.0 3.8 1.9 114 chr3R 20870254 intergenic not near genes chr3R 20870311 intergenic not near genes chr3R 20870368 intergenic not near genes chr3R_9_20870001 chr3R_20870001 RAL-228 933 chr3R 21141672 21141698 chr3R 21150153 21150179 Tirant 6 8481 0.5 4.5 2.5 1.7 8507 chr3R 21141672 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150179 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-228 934 chr3R 21163259 21163273 chr3R 21163337 21163351 5 78 0.0 5.5 2.8 1.3 92 chr3R 21163259 intron SNF4Agamma + chr3R 21163305 intron SNF4Agamma + chr3R 21163351 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-228 935 chr3R 21285644 21285674 chr3R 21285867 21285898 8 223 3.0 0.5 1.8 2.9 254 chr3R 21285644 intron SIFaR - chr3R 21285771 intron SIFaR - chr3R 21285898 intron SIFaR - chr3R_8_21285001 chr3R_21285001 RAL-228 936 chr3R 21322979 21322997 chr3R 21323058 21323069 5 78 2.0 0.0 1.0 2.5 90 chr3R 21322979 intron CG16791 - chr3R 21323024 intron CG16791 - chr3R 21323069 intron CG16791 - chr3R_5_21320001 chr3R_21320001 RAL-228 937 chr3R 21385697 21385954 chr3R 21385776 21386031 8 78 0.5 0.0 0.2 6.7 334 chr3R 21385697 intergenic not near genes chr3R 21385864 intergenic not near genes chr3R 21386031 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-228 938 chr3R 21509007 21509036 chr3R 21509086 21509115 9 79 0.5 2.0 1.2 4.1 108 chr3R 21509007 intron C15 + chr3R 21509061 intron C15 + chr3R 21509115 intron C15 + chr3R_9_21505001 chr3R_21505001 RAL-228 939 chr3R 21761129 21761152 chr3R 21768520 21768541 mdg1 9 7389 2.0 3.0 2.5 2.6 7412 chr3R 21761129 exon CG42335 + chr3R 21764835 intron CG42335 + chr3R 21768541 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-228 940 chr3R 8339246 8339247 chr3R 21907534 21907534 11 13568288 6.0 12.5 9.2 1.1 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-228 941 chr3R 17389054 17389054 chr3R 21907534 21907534 7 4518480 9.5 12.5 11.0 0.6 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_7_19645001 chr3R_19645001 RAL-228 942 chr3R 21907534 21907534 chr3R 28831801 28831802 17 6924268 20.0 10.0 15.0 1.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-228 943 chr3R 8339246 8339247 chr3R 21907535 21907535 6 13568288 6.0 13.0 9.5 0.6 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-228 944 chr3R 9620956 9620956 chr3R 21907535 21907535 6 12286579 10.0 13.0 11.5 0.5 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-228 945 chr3R 19457915 19457915 chr3R 21907535 21907535 4 2449620 1.5 13.0 7.2 0.5 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-228 946 chr3R 21907535 21907535 chr3R 28831799 28831802 42 6924266 20.5 11.0 15.8 2.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_42_25365001 chr3R_25365001 RAL-228 947 chr3R 9620956 9620957 chr3R 21907536 21907536 6 12286580 10.0 14.0 12.0 0.5 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-228 948 chr3R 21907536 21907536 chr3R 28831801 28831803 44 6924266 20.0 10.0 15.0 2.8 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_44_25365001 chr3R_25365001 RAL-228 949 chr3R 21907536 21907536 chr3R 29013339 29013340 5 7105804 20.0 17.0 18.5 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-228 950 chr3R 21985230 21985240 chr3R 21985335 21985345 4 105 1.0 1.5 1.2 1.8 115 chr3R 21985230 intron Eip93F + chr3R 21985288 intron Eip93F + chr3R 21985345 intron Eip93F + chr3R_4_21985001 chr3R_21985001 RAL-228 951 chr3R 22421672 22421699 chr3R 22421754 22421782 6 83 2.0 1.0 1.5 2.4 110 chr3R 22421672 intron mats + chr3R 22421727 intron mats + chr3R 22421782 intron mats + chr3R_6_22420001 chr3R_22420001 RAL-228 952 chr3R 22450546 22450579 chr3R 22453186 22453219 NOF 5 2639 1.0 3.5 2.2 1.6 2673 chr3R 22450546 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-228 953 chr3R 22520777 22520791 chr3R 22520864 22520878 5 87 0.5 1.0 0.8 2.8 101 chr3R 22520777 intron CG5346 - chr3R 22520828 intron CG5346 - chr3R 22520878 intron CG5346 - chr3R_5_22520001 chr3R_22520001 RAL-228 954 chr3R 22632108 22632129 chr3R 22632191 22632212 4 82 1.0 0.0 0.5 2.7 104 chr3R 22632108 intron loco - chr3R 22632160 intron loco - chr3R 22632212 intron loco - chr3R_4_22630001 chr3R_22630001 RAL-228 955 chr3R 22769092 22769118 chr3R 22769169 22769195 8 76 2.0 3.0 2.5 2.3 103 chr3R 22769092 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769195 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-228 956 chr3R 22880601 22880611 chr3R 22880678 22880688 5 77 2.5 8.5 5.5 0.8 87 chr3R 22880601 intergenic not near genes chr3R 22880644 intergenic not near genes chr3R 22880688 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-228 957 chr3R 23064176 23064195 chr3R 23064281 23064292 14 107 5.0 6.0 5.5 2.2 116 chr3R 23064176 exon CG17111 - chr3R 23064234 intron CG17111 - chr3R 23064292 exon CG17111 - chr3R_14_23060001 chr3R_23060001 RAL-228 958 chr3R 23114167 23114189 chr3R 23114245 23114265 7 78 4.0 0.5 2.2 2.2 98 chr3R 23114167 3` UTR Rassf - chr3R 23114216 3` UTR Rassf - chr3R 23114265 3` UTR Rassf - chr3R_7_23110001 chr3R_23110001 RAL-228 959 chr3R 23328726 23328729 chr3R 23328793 23328829 5 82 0.5 1.0 0.8 2.8 103 chr3R 23328726 intron pnt - chr3R 23328778 intron pnt - chr3R 23328829 intron pnt - chr3R_5_23325001 chr3R_23325001 RAL-228 960 chr3R 23548070 23548101 chr3R 23548372 23548398 8 303 1.0 2.0 1.5 3.2 328 chr3R 23548070 intergenic not near genes chr3R 23548234 intergenic not near genes chr3R 23548398 intergenic not near genes chr3R_8_23545001 chr3R_23545001 RAL-228 961 chr3R 23558404 23558427 chr3R 23560185 23560208 Bari1 7 1781 0.0 2.0 1.0 3.5 1804 chr3R 23558404 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-228 962 chr3R 23684714 23684726 chr3R 23685184 23685193 roo 7 471 2.5 5.5 4.0 1.4 479 chr3R 23684714 intron CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685193 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-228 963 chr3R 23865029 23865052 chr3R 23865118 23865141 5 89 3.5 0.0 1.8 1.8 112 chr3R 23865029 intron Pli - chr3R 23865085 intron Pli - chr3R 23865141 intron Pli - chr3R_5_23865001 chr3R_23865001 RAL-228 964 chr3R 23944910 23944934 chr3R 23944995 23945018 7 85 1.0 3.5 2.2 2.2 108 chr3R 23944910 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945018 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-228 965 chr3R 24072083 24072104 chr3R 24072521 24072538 jockey 8 437 5.0 0.0 2.5 2.3 455 chr3R 24072083 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072538 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-228 966 chr3R 24207216 24207246 chr3R 24212292 24212322 flea 7 5075 3.0 2.5 2.8 1.8 5106 chr3R 24207216 intron twin - chr3R 24209769 intron twin - chr3R 24212322 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-228 967 chr3R 21907534 21907536 chr3R 24389465 24389465 10 2481930 20.0 6.0 13.0 0.7 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_10_23145001 chr3R_23145001 RAL-228 968 chr3R 24426302 24426311 chr3R 24426556 24426568 4 256 1.5 4.0 2.8 1.1 266 chr3R 24426302 intron nAChRalpha1 - chr3R 24426435 intron nAChRalpha1 - chr3R 24426568 intron nAChRalpha1 - chr3R_4_24425001 chr3R_24425001 RAL-228 969 chr3R 24441386 24441414 chr3R 24441476 24441504 7 90 4.5 2.5 3.5 1.6 118 chr3R 24441386 intron nAChRalpha1 - chr3R 24441445 intron nAChRalpha1 - chr3R 24441504 intron nAChRalpha1 - chr3R_7_24440001 chr3R_24440001 RAL-228 970 chr3R 24493282 24493292 chr3R 24493511 24493521 BS 4 229 3.0 3.5 3.2 1.0 239 chr3R 24493282 intergenic not near genes chr3R 24493402 intergenic not near genes chr3R 24493521 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-228 971 chr3R 24667613 24667624 chr3R 24667690 24667701 4 77 1.0 0.0 0.5 2.7 88 chr3R 24667613 intron slo + chr3R 24667657 intron slo + chr3R 24667701 intron slo + chr3R_4_24665001 chr3R_24665001 RAL-228 972 chr3R 24730099 24730117 chr3R 24732477 24732495 Doc 5 2378 2.5 0.0 1.2 2.3 2396 chr3R 24730099 intron tok + chr3R 24731297 intron tok + chr3R 24732495 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-228 973 chr3R 24927127 24927145 chr3R 24931918 24931936 Doc 6 4790 1.0 2.5 1.8 2.1 4809 chr3R 24927127 intergenic Trf4-2 + chr3R 24929532 intergenic not near genes chr3R 24931936 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-228 974 chr3R 25006316 25006349 chr3R 25006698 25006731 11 382 3.5 2.5 3.0 2.8 415 chr3R 25006316 intron tnc + chr3R 25006524 intron tnc + chr3R 25006731 intron tnc + chr3R_11_25005001 chr3R_25005001 RAL-228 975 chr3R 25027539 25027562 chr3R 25027752 25027773 8 213 1.5 1.5 1.5 3.2 234 chr3R 25027539 intron Hr96 + chr3R 25027656 intron Hr96 + chr3R 25027773 intron Hr96 + chr3R_8_25025001 chr3R_25025001 RAL-228 976 chr3R 25082253 25082270 chr3R 25082330 25082347 4 77 0.5 4.0 2.2 1.2 94 chr3R 25082253 intergenic fd96Ca + chr3R 25082300 intergenic fd96Ca + chr3R 25082347 intergenic fd96Ca + chr3R_4_25080001 chr3R_25080001 RAL-228 977 chr3R 25368484 25368504 chr3R 25368601 25368621 5 117 1.5 0.0 0.8 2.8 137 chr3R 25368484 intron Fur1 - chr3R 25368552 intron Fur1 - chr3R 25368621 intron Fur1 - chr3R_5_25365001 chr3R_25365001 RAL-228 978 chr3R 25374851 25374868 chr3R 25374929 25374946 5 78 0.0 1.0 0.5 3.3 95 chr3R 25374851 intron Fur1 - chr3R 25374898 intron Fur1 - chr3R 25374946 intron Fur1 - chr3R_5_25370001 chr3R_25370001 RAL-228 979 chr3R 25499892 25499920 chr3R 25499970 25499998 7 78 2.0 1.0 1.5 2.8 106 chr3R 25499892 intergenic not near genes chr3R 25499945 intergenic not near genes chr3R 25499998 intergenic not near genes chr3R_7_25495001 chr3R_25495001 RAL-228 980 chr3R 25547499 25547525 chr3R 25547675 25547701 6 176 15.5 13.5 14.5 0.4 202 chr3R 25547499 intron msi + chr3R 25547600 intron msi + chr3R 25547701 intron msi + chr3R_6_25545001 chr3R_25545001 RAL-228 981 chr3R 25587366 25587396 chr3R 25587467 25587497 6 101 1.5 1.0 1.2 2.7 131 chr3R 25587366 intron msi + chr3R 25587432 intron msi + chr3R 25587497 intron msi + chr3R_6_25585001 chr3R_25585001 RAL-228 982 chr3R 25612581 25612596 chr3R 25612678 25612694 7 96 1.5 4.0 2.8 1.8 113 chr3R 25612581 intron Npl4 - chr3R 25612638 intron Npl4 - chr3R 25612694 intron Npl4 - chr3R_7_25610001 chr3R_25610001 RAL-228 983 chr3R 25618004 25618022 chr3R 25618121 25618139 5 117 3.5 1.0 2.2 1.6 135 chr3R 25618004 intron Npl4 - chr3R 25618072 intron Npl4 - chr3R 25618139 intron Npl4 - chr3R_5_25615001 chr3R_25615001 RAL-228 984 chr3R 25669065 25669091 chr3R 25669159 25669185 4 90 0.0 3.5 1.8 1.4 120 chr3R 25669065 intron Lgr3 + chr3R 25669125 intron Lgr3 + chr3R 25669185 intron Lgr3 + chr3R_4_25665001 chr3R_25665001 RAL-228 985 chr3R 25832690 25832723 chr3R 25841872 25841905 roo 10 9181 2.0 2.5 2.2 3.1 9215 chr3R 25832690 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_10_25835001 chr3R_25835001 RAL-228 986 chr3R 26060413 26060433 chr3R 26060499 26060519 6 83 2.5 2.5 2.5 1.7 106 chr3R 26060413 intron CG14544 + chr3R 26060466 intron CG14544 + chr3R 26060519 intron CG14544 + chr3R_6_26060001 chr3R_26060001 RAL-228 987 chr3R 26093844 26093875 chr3R 26093922 26093925 9 75 0.5 2.0 1.2 4.1 81 chr3R 26093844 intron dys - chr3R 26093884 intron dys - chr3R 26093925 intron dys - chr3R_9_26090001 chr3R_26090001 RAL-228 988 chr3R 26121960 26121971 chr3R 26122056 26122068 4 96 0.0 2.0 1.0 2.0 108 chr3R 26121960 intron CG31324 + chr3R 26122014 intron CG31324 + chr3R 26122068 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-228 989 chr3R 26122463 26122480 chr3R 26122539 26122556 5 75 2.5 1.5 2.0 1.7 93 chr3R 26122463 intron CG31324 + chr3R 26122510 intron CG31324 + chr3R 26122556 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-228 990 chr3R 26126269 26126287 chr3R 26126374 26126392 10 104 2.0 0.0 1.0 5.0 123 chr3R 26126269 intron CG31324 + chr3R 26126330 intron CG31324 + chr3R 26126392 intron CG31324 + chr3R_10_26125001 chr3R_26125001 RAL-228 991 chr3R 26202816 26202845 chr3R 26202902 26202930 12 86 1.5 5.5 3.5 2.7 114 chr3R 26202816 intron CR44320 + chr3R 26202873 intron CR44320 + chr3R 26202930 intron CR44320 + chr3R_12_26200001 chr3R_26200001 RAL-228 992 chr3R 26235501 26235522 chr3R 26235569 26235604 11 80 2.0 3.5 2.8 2.9 103 chr3R 26235501 5` UTR CR42745 + chr3R 26235552 5` UTR CR42745 + chr3R 26235604 5` UTR CR42745 + chr3R_11_26235001 chr3R_26235001 RAL-228 993 chr3R 26265815 26265847 chr3R 26265903 26265935 9 88 1.5 4.0 2.8 2.4 120 chr3R 26265815 intron CG6154 + chr3R 26265875 intron CG6154 + chr3R 26265935 intron CG6154 + chr3R_9_26265001 chr3R_26265001 RAL-228 994 chr3R 26294725 26294745 chr3R 26294803 26294823 4 78 1.5 2.0 1.8 1.4 98 chr3R 26294725 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294823 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-228 995 chr3R 26297702 26297735 chr3R 26297789 26297823 12 85 3.0 4.5 3.8 2.5 121 chr3R 26297702 intergenic not near genes chr3R 26297762 intergenic not near genes chr3R 26297823 intergenic not near genes chr3R_12_26295001 chr3R_26295001 RAL-228 996 chr3R 26376324 26376357 chr3R 26385484 26385517 roo 4 9158 1.5 0.0 0.8 2.2 9193 chr3R 26376324 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-228 997 chr3R 26405207 26405237 chr3R 26405285 26405312 5 77 0.5 1.0 0.8 2.8 105 chr3R 26405207 intergenic not near genes chr3R 26405260 intergenic not near genes chr3R 26405312 intergenic not near genes chr3R_5_26405001 chr3R_26405001 RAL-228 998 chr3R 26434103 26434112 chr3R 26434184 26434188 5 79 2.0 4.5 3.2 1.2 85 chr3R 26434103 intergenic not near genes chr3R 26434146 intergenic not near genes chr3R 26434188 intergenic not near genes chr3R_5_26430001 chr3R_26430001 RAL-228 999 chr3R 26542056 26542078 chr3R 26542146 26542155 7 89 2.0 2.5 2.2 2.2 99 chr3R 26542056 intron scrib + chr3R 26542106 intron scrib + chr3R 26542155 intron scrib + chr3R_7_26540001 chr3R_26540001 RAL-228 1000 chr3R 26558346 26558354 chr3R 26565651 26565666 Stalker4 5 7311 2.5 4.0 3.2 1.2 7320 chr3R 26558346 intron scrib + chr3R 26562006 intron scrib + chr3R 26565666 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-228 1001 chr3R 26963827 26963861 chr3R 26963978 26964012 6 151 1.5 2.0 1.8 2.1 185 chr3R 26963827 intron Tsp97E - chr3R 26963920 intron Tsp97E - chr3R 26964012 intron Tsp97E - chr3R_6_26960001 chr3R_26960001 RAL-228 1002 chr3R 27028722 27028753 chr3R 27028801 27028832 5 79 0.0 1.0 0.5 3.3 110 chr3R 27028722 intron RYa-R + chr3R 27028777 intron RYa-R + chr3R 27028832 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-228 1003 chr3R 27077114 27077130 chr3R 27077178 27077210 8 76 3.0 3.0 3.0 2.0 96 chr3R 27077114 intron CG14257 + chr3R 27077162 intron CG14257 + chr3R 27077210 intron CG14257 + chr3R_8_27075001 chr3R_27075001 RAL-228 1004 chr3R 27140520 27140547 chr3R 27148130 27148156 412 11 7610 3.0 1.0 2.0 3.7 7636 chr3R 27140520 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-228 1005 chr3R 27315993 27316010 chr3R 27316069 27316086 5 76 3.0 1.5 2.2 1.6 93 chr3R 27315993 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316086 exon CG3339 - chr3R_5_27315001 chr3R_27315001 RAL-228 1006 chr3R 27448877 27449171 chr3R 27448953 27449250 8 77 4.0 2.0 3.0 2.0 373 chr3R 27448877 intergenic not near genes chr3R 27449064 intergenic not near genes chr3R 27449250 intergenic not near genes chr3R_8_27445001 chr3R_27445001 RAL-228 1007 chr3R 27449183 27449198 chr3R 27449262 27449277 4 79 3.0 5.5 4.2 0.8 94 chr3R 27449183 intergenic not near genes chr3R 27449230 intergenic not near genes chr3R 27449277 intergenic not near genes chr3R_4_27445001 chr3R_27445001 RAL-228 1008 chr3R 27578481 27578515 chr3R 27578571 27578605 12 87 3.0 3.5 3.2 2.9 124 chr3R 27578481 intron wdb - chr3R 27578543 intron wdb - chr3R 27578605 intron wdb - chr3R_12_27575001 chr3R_27575001 RAL-228 1009 chr3R 27648599 27648870 chr3R 27648671 27648946 18 74 1.5 0.0 0.8 10.0 347 chr3R 27648599 intron tau - chr3R 27648772 intron tau - chr3R 27648946 intron tau - chr3R_18_27645001 chr3R_27645001 RAL-228 1010 chr3R 27789083 27789114 chr3R 27789160 27789174 7 74 1.0 2.5 1.8 2.5 91 chr3R 27789083 exon CG34353 - chr3R 27789128 intron CG34353 - chr3R 27789174 intron CG34353 - chr3R_7_27785001 chr3R_27785001 RAL-228 1011 chr3R 27851099 27851119 chr3R 27851222 27851242 9 123 1.5 1.5 1.5 3.6 143 chr3R 27851099 intron CG34353 - chr3R 27851170 intron CG34353 - chr3R 27851242 intron CG34353 - chr3R_9_27850001 chr3R_27850001 RAL-228 1012 chr3R 28068496 28068525 chr3R 28073938 28073967 I-element 9 5442 1.0 2.0 1.5 3.6 5471 chr3R 28068496 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073967 intron CG34362 + chr3R_9_28070001 chr3R_28070001 RAL-228 1013 chr3R 28393698 28393727 chr3R 28393798 28393827 6 99 1.0 0.5 0.8 3.3 129 chr3R 28393698 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393827 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-228 1014 chr3R 28441982 28442011 chr3R 28442077 28442106 8 90 7.5 7.5 7.5 0.9 124 chr3R 28441982 intron beat-VI + chr3R 28442044 intron beat-VI + chr3R 28442106 intron beat-VI + chr3R_8_28440001 chr3R_28440001 RAL-228 1015 chr3R 28478419 28478443 chr3R 28478496 28478524 4 80 2.5 1.0 1.8 1.4 105 chr3R 28478419 intergenic not near genes chr3R 28478472 intergenic not near genes chr3R 28478524 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-228 1016 chr3R 28479146 28479165 chr3R 28479229 28479243 4 82 1.0 3.0 2.0 1.3 97 chr3R 28479146 intergenic not near genes chr3R 28479194 intergenic not near genes chr3R 28479243 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-228 1017 chr3R 28484353 28484375 chr3R 28486270 28486292 26 1918 15.0 39.0 27.0 0.9 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_26_28485001 chr3R_28485001 RAL-228 1018 chr3R 28554697 28554728 chr3R 28554788 28554814 8 90 1.0 3.0 2.0 2.7 117 chr3R 28554697 intergenic not near genes chr3R 28554756 intergenic not near genes chr3R 28554814 intergenic not near genes chr3R_8_28550001 chr3R_28550001 RAL-228 1019 chr3R 28792875 28792898 chr3R 28797966 28797993 jockey 5 5094 1.5 3.0 2.2 1.6 5118 chr3R 28792875 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797993 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-228 1020 chr3R 21907534 21907536 chr3R 28831799 28831802 39 6924266 20.0 11.0 15.5 2.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-228 1021 chr3R 28967785 28967819 chr3R 28967866 28967900 8 80 5.5 1.0 3.2 1.9 115 chr3R 28967785 intron CG14521 - chr3R 28967842 intron CG14521 - chr3R 28967900 intron CG14521 - chr3R_8_28965001 chr3R_28965001 RAL-228 1022 chr3R 29009964 29009984 chr3R 29010070 29010089 6 106 0.0 3.0 1.5 2.4 125 chr3R 29009964 intron wat - chr3R 29010026 intron wat - chr3R 29010089 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-228 1023 chr3R 29054030 29054052 chr3R 29054105 29054128 4 76 1.0 3.0 2.0 1.3 98 chr3R 29054030 intergenic CG11842 +,CG11843 + chr3R 29054079 intergenic CG11842 +,CG11843 + chr3R 29054128 intergenic CG11842 +,CG11843 + chr3R_4_29050001 chr3R_29050001 RAL-228 1024 chr3R 29168594 29168618 chr3R 29168686 29168709 4 92 1.0 0.5 0.8 2.2 115 chr3R 29168594 intron CG11898 + chr3R 29168652 intron CG11898 + chr3R 29168709 intron CG11898 + chr3R_4_29165001 chr3R_29165001 RAL-228 1025 chr3R 29213059 29213091 chr3R 29213142 29213174 9 83 2.0 2.0 2.0 3.0 115 chr3R 29213059 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_9_29210001 chr3R_29210001 RAL-228 1026 chr3R 29237276 29237285 chr3R 29239297 29239306 5 2021 17.5 3.0 10.2 0.4 2030 chr3R 29237276 exon CG11951 - chr3R 29238291 intron CG11951 - chr3R 29239306 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-228 1027 chr3R 29406630 29406643 chr3R 29407906 29407928 jockey 5 1282 4.0 3.5 3.8 1.0 1298 chr3R 29406630 intron Ptp99A + chr3R 29407279 intron Ptp99A + chr3R 29407928 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-228 1028 chr3R 29447818 29447848 chr3R 29447925 29447955 4 107 0.5 0.5 0.5 2.7 137 chr3R 29447818 intron Ptp99A + chr3R 29447886 intron Ptp99A + chr3R 29447955 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-228 1029 chr3R 29472014 29472034 chr3R 29472106 29472113 13 91 2.5 4.0 3.2 3.1 99 chr3R 29472014 intron Ptp99A + chr3R 29472064 intron Ptp99A + chr3R 29472113 intron Ptp99A + chr3R_13_29470001 chr3R_29470001 RAL-228 1030 chr3R 29539489 29539506 chr3R 29539566 29539584 7 77 0.5 1.5 1.0 3.5 95 chr3R 29539489 intergenic not near genes chr3R 29539536 intergenic not near genes chr3R 29539584 intergenic not near genes chr3R_7_29535001 chr3R_29535001 RAL-228 1031 chr3R 29655658 29655674 chr3R 29655737 29655753 4 79 1.0 1.5 1.2 1.8 95 chr3R 29655658 intron Dop1R2 - chr3R 29655706 intron Dop1R2 - chr3R 29655753 intron Dop1R2 - chr3R_4_29655001 chr3R_29655001 RAL-228 1032 chr3R 29866290 29866312 chr3R 29866372 29866393 4 82 5.5 4.5 5.0 0.7 103 chr3R 29866290 intron Zip99C - chr3R 29866342 intron Zip99C - chr3R 29866393 intron Zip99C - chr3R_4_29865001 chr3R_29865001 RAL-228 1033 chr3R 29882017 29882052 chr3R 29891174 29891209 roo 6 9157 2.0 0.5 1.2 2.7 9192 chr3R 29882017 intron CG31038 + chr3R 29886613 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-228 1034 chr3R 29966064 29966074 chr3R 29966141 29966151 5 75 2.5 4.5 3.5 1.1 87 chr3R 29966064 intron TkR99D - chr3R 29966108 intron TkR99D - chr3R 29966151 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-228 1035 chr3R 30084861 30084874 chr3R 30086328 30086341 hobo 6 1467 3.0 3.5 3.2 1.4 1480 chr3R 30084861 intron sima + chr3R 30085601 intron sima + chr3R 30086341 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-228 1036 chr3R 30118218 30118242 chr3R 30118441 30118462 5 222 2.0 5.5 3.8 1.0 244 chr3R 30118218 intron sima + chr3R 30118340 intron sima + chr3R 30118462 intron sima + chr3R_5_30115001 chr3R_30115001 RAL-228 1037 chr3R 30260373 30260397 chr3R 30260449 30260473 4 76 0.5 1.5 1.0 2.0 100 chr3R 30260373 intergenic not near genes chr3R 30260423 intergenic not near genes chr3R 30260473 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-228 1038 chr3R 30300733 30300740 chr3R 30300812 30300821 4 80 5.0 8.0 6.5 0.5 88 chr3R 30300733 intron hdc + chr3R 30300777 intron hdc + chr3R 30300821 intron hdc + chr3R_4_30300001 chr3R_30300001 RAL-228 1039 chr3R 30339557 30339580 chr3R 30339865 30339889 10 309 2.5 2.0 2.2 3.1 332 chr3R 30339557 intron hdc + chr3R 30339723 intron hdc + chr3R 30339889 intron hdc + chr3R_10_30335001 chr3R_30335001 RAL-228 1040 chr3R 30456389 30456425 chr3R 30456469 30456505 6 79 0.0 1.5 0.8 3.3 116 chr3R 30456389 intergenic CG2224 - chr3R 30456447 3` UTR CG2224 - chr3R 30456505 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-228 1041 chr3R 30480484 30480493 chr3R 30482952 30482960 jockey 6 2468 5.0 4.0 4.5 1.1 2476 chr3R 30480484 intron PH4alphaEFB + chr3R 30481722 intron PH4alphaEFB + chr3R 30482960 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-228 1042 chr3R 30480496 30480508 chr3R 30482941 30482976 jockey 6 2464 3.5 2.0 2.8 1.6 2480 chr3R 30480496 intron PH4alphaEFB + chr3R 30481736 intron PH4alphaEFB + chr3R 30482976 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-228 1043 chr3R 30535154 30535181 chr3R 30535283 30535314 7 131 2.5 1.5 2.0 2.3 160 chr3R 30535154 intron tmod + chr3R 30535234 intron tmod + chr3R 30535314 intron tmod + chr3R_7_30535001 chr3R_30535001 RAL-228 1044 chr3R 30617193 30617206 chr3R 30617251 30617283 4 66 2.0 6.0 4.0 0.8 90 chr3R 30617193 intergenic not near genes chr3R 30617238 intergenic not near genes chr3R 30617283 intergenic not near genes chr3R_4_30615001 chr3R_30615001 RAL-228 1045 chr3R 30627605 30627618 chr3R 30627684 30627698 7 79 5.0 0.5 2.8 1.8 93 chr3R 30627605 exon CG2267 - chr3R 30627652 exon CG2267 - chr3R 30627698 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-228 1046 chr3R 30627623 30627638 chr3R 30627682 30627718 6 76 2.5 0.5 1.5 2.4 95 chr3R 30627623 exon CG2267 - chr3R 30627670 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_6_30625001 chr3R_30625001 RAL-228 1047 chr3R 30641705 30641716 chr3R 30641776 30641792 5 76 2.0 1.5 1.8 1.8 87 chr3R 30641705 intergenic not near genes chr3R 30641748 intergenic not near genes chr3R 30641792 intergenic not near genes chr3R_5_30640001 chr3R_30640001 RAL-228 1048 chr3R 30679536 30679551 chr3R 30687005 30687020 blood 5 7469 2.5 5.5 4.0 1.0 7484 chr3R 30679536 intergenic not near genes chr3R 30683278 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-228 1049 chr3R 30690166 30690189 chr3R 30690249 30690273 9 83 2.5 0.5 1.5 3.6 107 chr3R 30690166 intergenic Spn100A + chr3R 30690220 intergenic Spn100A + chr3R 30690273 intergenic Spn100A + chr3R_9_30690001 chr3R_30690001 RAL-228 1050 chr3R 30818814 30818845 chr3R 30820378 30820410 1360 6 1565 0.0 1.5 0.8 3.3 1596 chr3R 30818814 intron cindr + chr3R 30819612 intron cindr + chr3R 30820410 intron cindr + chr3R_6_30815001 chr3R_30815001 RAL-228 1051 chr3R 30900531 30900556 chr3R 30900611 30900636 6 80 2.0 2.0 2.0 2.0 105 chr3R 30900531 3` UTR Cyp4c3 + chr3R 30900584 3` UTR Cyp4c3 + chr3R 30900636 3` UTR Cyp4c3 + chr3R_6_30900001 chr3R_30900001 RAL-228 1052 chr3R 31031600 31031617 chr3R 31031728 31031743 5 128 2.5 1.5 2.0 1.7 143 chr3R 31031600 intergenic not near genes chr3R 31031672 intergenic not near genes chr3R 31031743 intergenic not near genes chr3R_5_31030001 chr3R_31030001 RAL-228 1053 chr3R 31279377 31279404 chr3R 31285567 31285595 diver 10 6190 1.5 0.5 1.0 5.0 6218 chr3R 31279377 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285595 intergenic not near genes chr3R_10_31280001 chr3R_31280001 RAL-228 1054 chr3R 31370698 31370736 chr3R 31370793 31370831 6 93 1.0 1.5 1.2 2.7 133 chr3R 31370698 3` UTR CG34347 + chr3R 31370764 3` UTR CG34347 + chr3R 31370831 3` UTR CG34347 + chr3R_6_31370001 chr3R_31370001 RAL-228 1055 chr3R 31413089 31413118 chr3R 31418289 31418318 copia 10 5200 2.0 0.0 1.0 5.0 5229 chr3R 31413089 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_10_31415001 chr3R_31415001 RAL-228 1056 chr3R 31426888 31426901 chr3R 31426980 31426993 4 92 2.0 1.0 1.5 1.6 105 chr3R 31426888 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31426993 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-228 1057 chr3R 31430719 31430746 chr3R 31430807 31430834 5 87 0.5 1.5 1.0 2.5 115 chr3R 31430719 intron Gprk2 + chr3R 31430776 intron Gprk2 + chr3R 31430834 intron Gprk2 + chr3R_5_31430001 chr3R_31430001 RAL-228 1058 chr3R 31435362 31435388 chr3R 31435514 31435540 6 152 1.5 0.5 1.0 3.0 178 chr3R 31435362 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435540 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-228 1059 chr3R 31435553 31435580 chr3R 31435815 31435841 8 262 1.0 0.5 0.8 4.4 288 chr3R 31435553 intron Gprk2 + chr3R 31435697 intron Gprk2 + chr3R 31435841 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-228 1060 chr3R 31530824 31530847 chr3R 31531151 31531172 8 327 2.0 4.0 3.0 2.0 348 chr3R 31530824 intergenic not near genes chr3R 31530998 intergenic not near genes chr3R 31531172 intergenic not near genes chr3R_8_31530001 chr3R_31530001 RAL-228 1061 chr3R 31538490 31538517 chr3R 31538568 31538595 4 78 1.5 0.0 0.8 2.2 105 chr3R 31538490 intergenic not near genes chr3R 31538542 intergenic not near genes chr3R 31538595 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-228 1062 chr3R 31630060 31630086 chr3R 31630165 31630191 6 105 0.5 2.0 1.2 2.7 131 chr3R 31630060 intron kek6 + chr3R 31630126 intron kek6 + chr3R 31630191 intron kek6 + chr3R_6_31630001 chr3R_31630001 RAL-228 1063 chr3R 31691538 31691556 chr3R 31696304 31696322 Doc 4 4764 3.5 7.0 5.2 0.6 4784 chr3R 31691538 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696322 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-228 1064 chr3R 31768866 31768890 chr3R 31769147 31769172 10 282 29.0 21.0 25.0 0.4 306 chr3R 31768866 5` UTR pncr017:3R + chr3R 31769019 5` UTR pncr017:3R + chr3R 31769172 5` UTR pncr017:3R + chr3R_10_31765001 chr3R_31765001 RAL-228 1065 chr3R 31858195 31858203 chr3R 31858295 31858306 4 102 0.0 4.0 2.0 1.3 111 chr3R 31858195 intron heph - chr3R 31858250 intron heph - chr3R 31858306 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-228 1066 chr3R 31943334 31943357 chr3R 31943411 31943434 4 77 1.5 0.0 0.8 2.2 100 chr3R 31943334 intron heph - chr3R 31943384 intron heph - chr3R 31943434 intron heph - chr3R_4_31940001 chr3R_31940001 RAL-228 1067 chr4 671611 671628 chr4 680194 680211 Tirant 7 8583 2.5 2.5 2.5 2.0 8600 chr4 671611 intron CG11360 + chr4 675911 intron CG11360 + chr4 680211 intron CG11360 + chr4_7_675001 chr4_675001 RAL-228 1068 chr4 959623 959657 chr4 959802 959836 7 179 1.0 1.0 1.0 3.5 213 chr4 959623 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959836 5` UTR CR44030 + chr4_7_955001 chr4_955001 RAL-228 1069 chrX 201044 201060 chrX 201114 201138 6 75 1.0 1.0 1.0 3.0 94 chrX 201044 intergenic not near genes chrX 201091 intergenic not near genes chrX 201138 intergenic not near genes chrX_6_200001 chrX_200001 RAL-228 1070 chrX 440999 441022 chrX 441077 441100 4 78 2.0 2.5 2.2 1.2 101 chrX 440999 intron CG32816 - chrX 441050 intron CG32816 - chrX 441100 intron CG32816 - chrX_4_440001 chrX_440001 RAL-228 1071 chrX 443508 443525 chrX 443590 443599 4 80 2.5 3.5 3.0 1.0 91 chrX 443508 intron CG32816 - chrX 443554 intron CG32816 - chrX 443599 intron CG32816 - chrX_4_440001 chrX_440001 RAL-228 1072 chrX 494601 494634 chrX 494687 494726 5 91 1.5 0.0 0.8 2.8 125 chrX 494601 intergenic CG17778 + chrX 494664 5` UTR CG17778 + chrX 494726 intron CG17778 + chrX_5_490001 chrX_490001 RAL-228 1073 chrX 547631 547658 chrX 547874 547902 4 244 2.0 1.5 1.8 1.4 271 chrX 547631 intron Appl + chrX 547766 intron Appl + chrX 547902 intron Appl + chrX_4_545001 chrX_545001 RAL-228 1074 chrX 551427 551453 chrX 558983 559009 412 8 7558 3.5 1.5 2.5 2.3 7582 chrX 551427 intron Appl + chrX 555218 intron Appl + chrX 559009 intron Appl + chrX_8_555001 chrX_555001 RAL-228 1075 chrX 680843 680869 chrX 680926 680952 8 82 2.5 3.5 3.0 2.0 109 chrX 680843 intergenic not near genes chrX 680898 intergenic not near genes chrX 680952 intergenic not near genes chrX_8_680001 chrX_680001 RAL-228 1076 chrX 706803 706815 chrX 707167 707179 6 363 0.0 3.0 1.5 2.4 376 chrX 706803 intron sdk + chrX 706991 intron sdk + chrX 707179 intron sdk + chrX_6_705001 chrX_705001 RAL-228 1077 chrX 778134 778160 chrX 778219 778250 10 90 3.0 1.5 2.2 3.1 116 chrX 778134 intron fz3 + chrX 778192 intron fz3 + chrX 778250 intron fz3 + chrX_10_775001 chrX_775001 RAL-228 1078 chrX 906701 906732 chrX 908490 908518 S-element 13 1789 1.0 3.0 2.0 4.3 1817 chrX 906701 intron CG43867 - chrX 907610 intron CG43867 - chrX 908518 intron CG43867 - chrX_13_905001 chrX_905001 RAL-228 1079 chrX 1023649 1023671 chrX 1023771 1023794 8 123 1.5 2.0 1.8 2.9 145 chrX 1023649 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1023722 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1023794 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX_8_1020001 chrX_1020001 RAL-228 1080 chrX 1627981 1628007 chrX 1635448 1635465 gtwin 9 7466 0.5 1.5 1.0 4.5 7484 chrX 1627981 intron,intron Mur2B -,br + chrX 1631723 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_9_1630001 chrX_1630001 RAL-228 1081 chrX 1903349 1903375 chrX 1903431 1903457 8 81 1.0 1.0 1.0 4.0 108 chrX 1903349 5` UTR CR43864 + chrX 1903403 5` UTR CR43864 + chrX 1903457 5` UTR CR43864 + chrX_8_1900001 chrX_1900001 RAL-228 1082 chrX 1954887 1954910 chrX 1962827 1962848 Stalker2 4 7938 2.0 1.5 1.8 1.4 7961 chrX 1954887 intron Hr4 + chrX 1958868 intron Hr4 + chrX 1962848 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-228 1083 chrX 2270457 2270487 chrX 2270546 2270553 6 81 1.5 1.5 1.5 2.4 96 chrX 2270457 intron,5` UTR CG2924 -,CR45480 + chrX 2270505 intron,5` UTR CG2924 -,CR45480 + chrX 2270553 intron CG2924 - chrX_6_2270001 chrX_2270001 RAL-228 1084 chrX 2399835 2399861 chrX 2408188 2408192 roo 6 8348 3.5 0.0 1.8 2.1 8357 chrX 2399835 intergenic not near genes chrX 2404014 intergenic not near genes chrX 2408192 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-228 1085 chrX 2578822 2578840 chrX 2578914 2578932 4 92 1.5 2.5 2.0 1.3 110 chrX 2578822 intergenic Pdfr +,Vha36-3 - chrX 2578877 intergenic Vha36-3 -,Pdfr + chrX 2578932 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-228 1086 chrX 2803494 2803529 chrX 2803637 2803671 4 143 1.0 0.0 0.5 2.7 177 chrX 2803494 intron kirre + chrX 2803582 intron kirre + chrX 2803671 intron kirre + chrX_4_2800001 chrX_2800001 RAL-228 1087 chrX 2844896 2844910 chrX 2852306 2852320 mdg1 5 7410 4.0 0.5 2.2 1.6 7424 chrX 2844896 intron kirre + chrX 2848608 intron kirre + chrX 2852320 intron kirre + chrX_5_2845001 chrX_2845001 RAL-228 1088 chrX 2888115 2888145 chrX 2888193 2888223 8 78 3.5 2.0 2.8 2.1 108 chrX 2888115 intron kirre + chrX 2888169 intron kirre + chrX 2888223 intron kirre + chrX_8_2885001 chrX_2885001 RAL-228 1089 chrX 3203463 3203489 chrX 3203662 3203688 6 199 1.0 2.0 1.5 2.4 225 chrX 3203463 intron dnc + chrX 3203576 intron dnc + chrX 3203688 intron dnc + chrX_6_3200001 chrX_3200001 RAL-228 1090 chrX 3351803 3351814 chrX 3351889 3351900 4 86 2.0 3.0 2.5 1.1 97 chrX 3351803 intergenic not near genes chrX 3351852 intergenic not near genes chrX 3351900 intergenic not near genes chrX_4_3350001 chrX_3350001 RAL-228 1091 chrX 3535411 3535428 chrX 3535502 3535519 4 91 1.0 2.0 1.5 1.6 108 chrX 3535411 intron CG32791 - chrX 3535465 intron CG32791 - chrX 3535519 intron CG32791 - chrX_4_3535001 chrX_3535001 RAL-228 1092 chrX 3597550 3597578 chrX 3619718 3619746 roo 12 22167 2.0 2.5 2.2 3.8 22196 chrX 3597550 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619746 intron AstA-R1 + chrX_12_3605001 chrX_3605001 RAL-228 1093 chrX 3620467 3620494 chrX 3620565 3620590 5 98 0.5 0.5 0.5 3.3 123 chrX 3620467 intron AstA-R1 + chrX 3620528 intron AstA-R1 + chrX 3620590 intron AstA-R1 + chrX_5_3620001 chrX_3620001 RAL-228 1094 chrX 3703716 3703726 chrX 3703804 3703814 4 88 1.5 2.0 1.8 1.4 98 chrX 3703716 intergenic CR45102 + chrX 3703765 intergenic CR45102 + chrX 3703814 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-228 1095 chrX 3881277 3881304 chrX 3881416 3881443 6 139 2.5 1.5 2.0 2.0 166 chrX 3881277 intron VhaAC39-1 + chrX 3881360 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-228 1096 chrX 3915532 3915553 chrX 3915619 3915640 4 87 1.0 0.5 0.8 2.2 108 chrX 3915532 intron CG42541 - chrX 3915586 intron CG42541 - chrX 3915640 intron CG42541 - chrX_4_3915001 chrX_3915001 RAL-228 1097 chrX 3922130 3922160 chrX 3922405 3922434 5 275 0.0 5.0 2.5 1.4 304 chrX 3922130 intron CG42541 - chrX 3922282 intron CG42541 - chrX 3922434 intron CG42541 - chrX_5_3920001 chrX_3920001 RAL-228 1098 chrX 3986862 3986882 chrX 3994494 3994515 412 7 7633 2.5 1.0 1.8 2.5 7653 chrX 3986862 intergenic not near genes chrX 3990688 intergenic not near genes chrX 3994515 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-228 1099 chrX 4029529 4029549 chrX 4029719 4029739 4 190 3.5 0.0 1.8 1.4 210 chrX 4029529 intergenic not near genes chrX 4029634 intergenic not near genes chrX 4029739 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-228 1100 chrX 4240467 4240486 chrX 4240816 4240835 5 349 3.0 2.5 2.8 1.3 368 chrX 4240467 intergenic not near genes chrX 4240651 intergenic not near genes chrX 4240835 intergenic not near genes chrX_5_4240001 chrX_4240001 RAL-228 1101 chrX 4324392 4324408 chrX 4324469 4324485 4 77 0.0 0.5 0.2 3.3 93 chrX 4324392 intron norpA + chrX 4324438 intron norpA + chrX 4324485 intron norpA + chrX_4_4320001 chrX_4320001 RAL-228 1102 chrX 4613543 4613575 chrX 4613633 4613665 11 90 1.5 4.5 3.0 2.8 122 chrX 4613543 intergenic not near genes chrX 4613604 intergenic not near genes chrX 4613665 intergenic not near genes chrX_11_4610001 chrX_4610001 RAL-228 1103 chrX 4700394 4700426 chrX 4700737 4700769 jockey 8 342 1.0 0.5 0.8 4.4 375 chrX 4700394 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_8_4700001 chrX_4700001 RAL-228 1104 chrX 4731813 4731831 chrX 4736906 4736924 jockey 8 5093 3.5 2.5 3.0 2.0 5111 chrX 4731813 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736924 intergenic not near genes chrX_8_4730001 chrX_4730001 RAL-228 1105 chrX 4827967 4827999 chrX 4835337 4835370 Stalker4 7 7357 3.5 2.0 2.8 1.8 7403 chrX 4827967 intergenic not near genes chrX 4831668 intergenic not near genes chrX 4835370 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-228 1106 chrX 4885772 4885807 chrX 4885865 4885900 6 92 2.0 2.5 2.2 1.9 128 chrX 4885772 intron CG42594 + chrX 4885836 intron CG42594 + chrX 4885900 intron CG42594 + chrX_6_4885001 chrX_4885001 RAL-228 1107 chrX 4893364 4893388 chrX 4893632 4893657 5 269 1.5 1.0 1.2 2.3 293 chrX 4893364 intron CG42594 + chrX 4893510 intron CG42594 + chrX 4893657 intron CG42594 + chrX_5_4890001 chrX_4890001 RAL-228 1108 chrX 5204457 5204473 chrX 5204660 5204676 5 203 4.0 0.5 2.2 1.6 219 chrX 5204457 intron,intron CG15465 +,rg + chrX 5204566 intron,intron CG15465 +,rg + chrX 5204676 intron,intron CG15465 +,rg + chrX_5_5200001 chrX_5200001 RAL-228 1109 chrX 5223703 5223727 chrX 5223779 5223805 4 78 1.0 1.0 1.0 2.0 102 chrX 5223703 intron,intron CG15465 +,rg + chrX 5223754 intron,intron CG15465 +,rg + chrX 5223805 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-228 1110 chrX 5473594 5473616 chrX 5473670 5473677 5 72 1.5 0.5 1.0 2.5 83 chrX 5473594 intron SPR + chrX 5473636 intron SPR + chrX 5473677 intron SPR + chrX_5_5470001 chrX_5470001 RAL-228 1111 chrX 5798864 5798887 chrX 5799025 5799049 4 162 0.5 4.0 2.2 1.2 185 chrX 5798864 intergenic not near genes chrX 5798956 intergenic not near genes chrX 5799049 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-228 1112 chrX 6118696 6118722 chrX 6118778 6118804 5 82 1.5 3.0 2.2 1.6 108 chrX 6118696 intron Ca-alpha1T - chrX 6118750 intron Ca-alpha1T - chrX 6118804 intron Ca-alpha1T - chrX_5_6115001 chrX_6115001 RAL-228 1113 chrX 6171585 6171605 chrX 6179018 6179038 Quasimodo 5 7433 1.0 0.0 0.5 3.3 7453 chrX 6171585 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179038 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-228 1114 chrX 6203753 6203769 chrX 6203835 6203851 5 81 3.0 0.5 1.8 1.8 98 chrX 6203753 intergenic not near genes chrX 6203802 intergenic not near genes chrX 6203851 intergenic not near genes chrX_5_6200001 chrX_6200001 RAL-228 1115 chrX 6335218 6335244 chrX 6337727 6337754 Tirant 5 2510 0.5 1.5 1.0 2.5 2536 chrX 6335218 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-228 1116 chrX 6392874 6392897 chrX 6397633 6397662 Doc 8 4764 3.5 1.0 2.2 2.5 4788 chrX 6392874 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397662 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-228 1117 chrX 6562818 6562850 chrX 6571299 6571332 Tirant 18 8481 3.0 3.5 3.2 4.3 8514 chrX 6562818 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571332 intron CG34417 + chrX_18_6565001 chrX_6565001 RAL-228 1118 chrX 6903257 6903282 chrX 6903335 6903360 9 78 0.5 0.5 0.5 6.0 103 chrX 6903257 intergenic not near genes chrX 6903308 intergenic not near genes chrX 6903360 intergenic not near genes chrX_9_6900001 chrX_6900001 RAL-228 1119 chrX 6941577 6941605 chrX 6941654 6941680 7 76 1.5 0.5 1.0 3.5 103 chrX 6941577 intron CG14431 + chrX 6941628 intron CG14431 + chrX 6941680 intron CG14431 + chrX_7_6940001 chrX_6940001 RAL-228 1120 chrX 7023603 7023634 chrX 7030991 7031016 Tabor 10 7389 2.5 3.0 2.8 2.6 7413 chrX 7023603 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031016 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-228 1121 chrX 7270083 7270112 chrX 7270170 7270200 12 84 1.5 1.5 1.5 4.8 117 chrX 7270083 intron CR44357 - chrX 7270142 intron CR44357 - chrX 7270200 intron CR44357 - chrX_12_7270001 chrX_7270001 RAL-228 1122 chrX 7702909 7702936 chrX 7703341 7703345 jockey 7 434 1.5 2.5 2.0 2.3 436 chrX 7702909 intron CHES-1-like - chrX 7703127 intron CHES-1-like - chrX 7703345 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-228 1123 chrX 8075148 8075171 chrX 8075257 8075280 6 108 3.5 4.5 4.0 1.2 132 chrX 8075148 exon Upf2 - chrX 8075214 5` UTR Upf2 - chrX 8075280 5` UTR Upf2 - chrX_6_8075001 chrX_8075001 RAL-228 1124 chrX 8085572 8085589 chrX 8085658 8085675 6 86 2.0 1.5 1.8 2.1 103 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085624 intron,5` UTR CG2256 -,CR45535 + chrX 8085675 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-228 1125 chrX 8364848 8364880 chrX 8365245 8365294 BS 4 401 0.5 0.0 0.2 3.3 446 chrX 8364848 intron nAChRalpha3 - chrX 8365071 intron nAChRalpha3 - chrX 8365294 intron nAChRalpha3 - chrX_4_8365001 chrX_8365001 RAL-228 1126 chrX 8629687 8629713 chrX 8629904 8629931 9 216 3.5 7.0 5.2 1.5 244 chrX 8629687 intergenic oc - chrX 8629809 intergenic oc - chrX 8629931 intergenic oc - chrX_9_8625001 chrX_8625001 RAL-228 1127 chrX 8730456 8730464 chrX 8730532 8730540 5 76 0.0 2.5 1.2 2.3 84 chrX 8730456 intergenic not near genes chrX 8730498 intergenic not near genes chrX 8730540 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-228 1128 chrX 8922326 8922363 chrX 8922760 8922796 jockey 13 433 2.0 1.5 1.8 4.6 470 chrX 8922326 intron rdgA + chrX 8922561 intron rdgA + chrX 8922796 intron rdgA + chrX_13_8920001 chrX_8920001 RAL-228 1129 chrX 8948769 8948791 chrX 8956279 8956301 roo 4 7510 0.0 1.5 0.8 2.2 7532 chrX 8948769 intron rdgA + chrX 8952535 intron rdgA + chrX 8956301 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-228 1130 chrX 9218079 9218089 chrX 9218170 9218180 4 91 1.5 0.5 1.0 2.0 101 chrX 9218079 3` UTR t - chrX 9218130 3` UTR t - chrX 9218180 3` UTR t - chrX_4_9215001 chrX_9215001 RAL-228 1131 chrX 9337954 9337973 chrX 9338046 9338057 4 89 0.5 2.0 1.2 1.8 103 chrX 9337954 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338057 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-228 1132 chrX 9429455 9429481 chrX 9430058 9430085 6 604 2.0 1.0 1.5 2.4 630 chrX 9429455 intron mgl - chrX 9429770 intron mgl - chrX 9430085 intron mgl - chrX_6_9425001 chrX_9425001 RAL-228 1133 chrX 9508142 9508155 chrX 9509660 9509673 jockey 4 1518 1.5 3.0 2.2 1.2 1531 chrX 9508142 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509673 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-228 1134 chrX 9575797 9575822 chrX 9576114 9576140 mdg3 6 322 2.5 2.0 2.2 1.9 343 chrX 9575797 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576140 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-228 1135 chrX 9709673 9709706 chrX 9709760 9709793 7 87 1.5 1.0 1.2 3.2 120 chrX 9709673 intergenic not near genes chrX 9709733 intergenic not near genes chrX 9709793 intergenic not near genes chrX_7_9705001 chrX_9705001 RAL-228 1136 chrX 9845361 9845361 chrX 14544906 14544908 4 4699546 7.5 15.0 11.2 0.3 4699547 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544908 intergenic not near genes chrX_4_12195001 chrX_12195001 RAL-228 1137 chrX 10218305 10218318 chrX 10218869 10218882 5 564 1.5 0.0 0.8 2.8 577 chrX 10218305 exon,5` UTR CG15308 -,CR45629 + chrX 10218594 intron,intron CG15308 -,CR45629 + chrX 10218882 intron,5` UTR CG15308 -,CR45629 + chrX_5_10215001 chrX_10215001 RAL-228 1138 chrX 10343471 10343488 chrX 10343663 10343680 4 192 1.0 0.5 0.8 2.2 209 chrX 10343471 intron CG43740 + chrX 10343576 intron CG43740 + chrX 10343680 intron CG43740 + chrX_4_10340001 chrX_10340001 RAL-228 1139 chrX 10367192 10367205 chrX 10367301 10367314 4 109 3.5 4.0 3.8 0.8 122 chrX 10367192 exon CG32679 - chrX 10367253 intron CG32679 - chrX 10367314 intron CG32679 - chrX_4_10365001 chrX_10365001 RAL-228 1140 chrX 10550853 10550874 chrX 10552320 10552341 hobo 10 1467 4.5 1.5 3.0 2.5 1488 chrX 10550853 intron spri - chrX 10551597 intron spri - chrX 10552341 intron spri - chrX_10_10550001 chrX_10550001 RAL-228 1141 chrX 10686050 10686077 chrX 10691185 10691214 roo 9 5136 1.0 1.0 1.0 4.5 5164 chrX 10686050 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691214 intron X11Lbeta + chrX_9_10685001 chrX_10685001 RAL-228 1142 chrX 10772676 10772692 chrX 10772759 10772775 Tirant 4 83 1.5 0.0 0.8 2.2 99 chrX 10772676 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772775 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-228 1143 chrX 10925499 10925523 chrX 10925578 10925602 4 79 1.0 0.5 0.8 2.2 103 chrX 10925499 exon v + chrX 10925550 3` UTR v + chrX 10925602 3` UTR v + chrX_4_10925001 chrX_10925001 RAL-228 1144 chrX 11062457 11062477 chrX 11062552 11062572 5 95 0.5 3.5 2.0 1.7 115 chrX 11062457 exon CG1537 - chrX 11062514 intron CG1537 - chrX 11062572 intron CG1537 - chrX_5_11060001 chrX_11060001 RAL-228 1145 chrX 11069172 11069188 chrX 11069315 11069331 6 143 0.5 0.0 0.2 5.0 159 chrX 11069172 intergenic not near genes chrX 11069252 intergenic not near genes chrX 11069331 intergenic not near genes chrX_6_11065001 chrX_11065001 RAL-228 1146 chrX 11268564 11268594 chrX 11270057 11270087 hopper2 5 1493 3.0 2.0 2.5 1.4 1523 chrX 11268564 intron CG44422 - chrX 11269326 intron CG44422 - chrX 11270087 intron CG44422 - chrX_5_11265001 chrX_11265001 RAL-228 1147 chrX 11312057 11312089 chrX 11319410 11319434 Stalker2 5 7351 1.0 0.5 0.8 2.8 7377 chrX 11312057 intergenic not near genes chrX 11315746 intergenic not near genes chrX 11319434 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-228 1148 chrX 12153357 12153381 chrX 12153522 12153546 6 165 2.0 0.5 1.2 2.7 189 chrX 12153357 intron Ten-a + chrX 12153452 intron Ten-a + chrX 12153546 intron Ten-a + chrX_6_12150001 chrX_12150001 RAL-228 1149 chrX 12168144 12168156 chrX 12173586 12173598 I-element 6 5442 4.5 3.0 3.8 1.2 5454 chrX 12168144 intron Ten-a + chrX 12170871 intron Ten-a + chrX 12173598 intron Ten-a + chrX_6_12170001 chrX_12170001 RAL-228 1150 chrX 12176739 12176763 chrX 12176815 12176839 6 76 2.0 3.5 2.8 1.6 100 chrX 12176739 intron,3` UTR Ten-a +,CG1924 - chrX 12176789 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_6_12175001 chrX_12175001 RAL-228 1151 chrX 12375491 12375503 chrX 12375589 12375601 5 98 4.5 4.5 4.5 0.9 110 chrX 12375491 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375601 exon Ir11a - chrX_5_12375001 chrX_12375001 RAL-228 1152 chrX 12392799 12392827 chrX 12392880 12392908 9 81 2.5 2.5 2.5 2.6 109 chrX 12392799 intergenic not near genes chrX 12392854 intergenic not near genes chrX 12392908 intergenic not near genes chrX_9_12390001 chrX_12390001 RAL-228 1153 chrX 12567694 12567712 chrX 12567771 12567806 4 90 0.5 1.5 1.0 2.0 112 chrX 12567694 intron CG43921 - chrX 12567750 intron CG43921 - chrX 12567806 intron CG43921 - chrX_4_12565001 chrX_12565001 RAL-228 1154 chrX 13236891 13236901 chrX 13236975 13236985 5 85 0.0 1.0 0.5 3.3 94 chrX 13236891 intron mew - chrX 13236938 intron mew - chrX 13236985 intron mew - chrX_5_13235001 chrX_13235001 RAL-228 1155 chrX 13374841 13374866 chrX 13374921 13374946 6 78 2.0 0.0 1.0 3.0 105 chrX 13374841 intron CG1640 + chrX 13374894 intron CG1640 + chrX 13374946 intron CG1640 + chrX_6_13370001 chrX_13370001 RAL-228 1156 chrX 13429484 13429495 chrX 13430633 13430643 jockey 4 1148 2.5 2.5 2.5 1.1 1159 chrX 13429484 intergenic not near genes chrX 13430064 intergenic not near genes chrX 13430643 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-228 1157 chrX 13875958 13875989 chrX 13876042 13876073 6 84 0.0 0.5 0.2 5.0 115 chrX 13875958 intron mamo - chrX 13876016 intron mamo - chrX 13876073 intron mamo - chrX_6_13875001 chrX_13875001 RAL-228 1158 chrX 13943277 13943303 chrX 13943368 13943394 7 90 0.0 4.0 2.0 2.3 117 chrX 13943277 intron mamo - chrX 13943336 intron mamo - chrX 13943394 intron mamo - chrX_7_13940001 chrX_13940001 RAL-228 1159 chrX 13975879 13975898 chrX 13975956 13975974 5 77 0.0 2.5 1.2 2.3 95 chrX 13975879 intron mamo - chrX 13975926 intron mamo - chrX 13975974 intron mamo - chrX_5_13975001 chrX_13975001 RAL-228 1160 chrX 14105023 14105051 chrX 14114174 14114194 roo 12 9149 2.5 2.5 2.5 3.4 9171 chrX 14105023 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114194 5` UTR CR44657 + chrX_12_14105001 chrX_14105001 RAL-228 1161 chrX 14416304 14416313 chrX 14421072 14421081 F-element 4 4768 0.0 0.0 0.0 4.0 4777 chrX 14416304 intron dpr8 + chrX 14418692 intron dpr8 + chrX 14421081 intron dpr8 + chrX_4_14415001 chrX_14415001 RAL-228 1162 chrX 14484973 14484992 chrX 14485062 14485081 4 89 0.0 5.0 2.5 1.1 108 chrX 14484973 intergenic not near genes chrX 14485027 intergenic not near genes chrX 14485081 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-228 1163 chrX 14636460 14636487 chrX 14641901 14641927 I-element 5 5440 1.5 1.5 1.5 2.0 5467 chrX 14636460 intron NetA - chrX 14639194 intron NetA - chrX 14641927 intron NetA - chrX_5_14635001 chrX_14635001 RAL-228 1164 chrX 14714046 14714065 chrX 14714128 14714147 4 82 0.0 1.5 0.8 2.2 101 chrX 14714046 intron NetB - chrX 14714096 intron NetB - chrX 14714147 intron NetB - chrX_4_14710001 chrX_14710001 RAL-228 1165 chrX 14813735 14813767 chrX 14813813 14813845 8 78 3.0 1.5 2.2 2.5 110 chrX 14813735 intron rut - chrX 14813790 intron rut - chrX 14813845 intron rut - chrX_8_14810001 chrX_14810001 RAL-228 1166 chrX 14883336 14883350 chrX 14883422 14883436 6 86 3.0 1.5 2.2 1.9 100 chrX 14883336 intron Flo2 + chrX 14883386 intron Flo2 + chrX 14883436 intron Flo2 + chrX_6_14880001 chrX_14880001 RAL-228 1167 chrX 14883352 14883355 chrX 14883420 14883441 5 82 2.5 1.5 2.0 1.7 89 chrX 14883352 intron Flo2 + chrX 14883396 intron Flo2 + chrX 14883441 intron Flo2 + chrX_5_14880001 chrX_14880001 RAL-228 1168 chrX 14967511 14967541 chrX 14967753 14967782 7 239 1.0 1.5 1.2 3.2 271 chrX 14967511 intron eag + chrX 14967646 intron eag + chrX 14967782 intron eag + chrX_7_14965001 chrX_14965001 RAL-228 1169 chrX 15273712 15273732 chrX 15274879 15274898 1360 5 1163 7.0 6.0 6.5 0.7 1186 chrX 15273712 intergenic not near genes chrX 15274305 intergenic not near genes chrX 15274898 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-228 1170 chrX 15277642 15277658 chrX 15277727 15277743 4 85 1.5 2.0 1.8 1.4 101 chrX 15277642 intergenic not near genes chrX 15277692 intergenic not near genes chrX 15277743 intergenic not near genes chrX_4_15275001 chrX_15275001 RAL-228 1171 chrX 15413055 15413082 chrX 15417357 15417383 Juan 5 4302 3.5 2.5 3.0 1.2 4328 chrX 15413055 intron Cngl - chrX 15415219 intron Cngl - chrX 15417383 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-228 1172 chrX 15435690 15435699 chrX 15436123 15436132 rover 4 433 0.0 4.5 2.2 1.2 442 chrX 15435690 intron Cngl - chrX 15435911 intron Cngl - chrX 15436132 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-228 1173 chrX 16072399 16072420 chrX 16072891 16072912 6 493 2.5 2.5 2.5 1.7 513 chrX 16072399 intron Nipsnap - chrX 16072656 intron Nipsnap - chrX 16072912 intron Nipsnap - chrX_6_16070001 chrX_16070001 RAL-228 1174 chrX 16156138 16156158 chrX 16156209 16156212 6 71 2.0 5.0 3.5 1.3 74 chrX 16156138 intergenic not near genes chrX 16156175 intergenic not near genes chrX 16156212 intergenic not near genes chrX_6_16155001 chrX_16155001 RAL-228 1175 chrX 16340665 16340695 chrX 16349822 16349852 roo 4 9157 0.0 0.0 0.0 4.0 9187 chrX 16340665 intergenic Dsp1 + chrX 16345258 intergenic not near genes chrX 16349852 intergenic sl + chrX_4_16345001 chrX_16345001 RAL-228 1176 chrX 16492646 16492676 chrX 16498223 16498253 mdg3 7 5577 2.5 0.0 1.2 3.2 5607 chrX 16492646 intron para - chrX 16495450 intron para - chrX 16498253 intron para - chrX_7_16495001 chrX_16495001 RAL-228 1177 chrX 16689622 16689654 chrX 16689708 16689740 7 84 3.5 3.0 3.2 1.7 118 chrX 16689622 intron Sep4 - chrX 16689681 intron Sep4 - chrX 16689740 intron Sep4 - chrX_7_16685001 chrX_16685001 RAL-228 1178 chrX 16785289 16785303 chrX 16785393 16785406 4 104 0.0 3.5 1.8 1.4 117 chrX 16785289 3` UTR CG9609 - chrX 16785348 3` UTR CG9609 - chrX 16785406 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-228 1179 chrX 16936002 16936028 chrX 16936419 16936446 jockey 6 418 0.0 0.5 0.2 5.0 444 chrX 16936002 intron CG4928 + chrX 16936224 intron CG4928 + chrX 16936446 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-228 1180 chrX 17011967 17011995 chrX 17012050 17012055 7 80 1.0 2.5 1.8 2.5 88 chrX 17011967 intron CG45002 - chrX 17012011 intron CG45002 - chrX 17012055 intron CG45002 - chrX_7_17010001 chrX_17010001 RAL-228 1181 chrX 17352590 17352605 chrX 17352693 17352708 4 103 0.0 1.5 0.8 2.2 118 chrX 17352590 intergenic not near genes chrX 17352649 intergenic not near genes chrX 17352708 intergenic not near genes chrX_4_17350001 chrX_17350001 RAL-228 1182 chrX 17680888 17680921 chrX 17680965 17680998 9 77 0.5 2.0 1.2 4.1 110 chrX 17680888 intron chas - chrX 17680943 intron chas - chrX 17680998 intron chas - chrX_9_17680001 chrX_17680001 RAL-228 1183 chrX 18194078 18194101 chrX 18194607 18194636 BS 7 534 1.5 0.0 0.8 3.9 558 chrX 18194078 intron Frq2 + chrX 18194357 intron Frq2 + chrX 18194636 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-228 1184 chrX 18558787 18558806 chrX 18558869 18558888 7 82 0.0 2.5 1.2 3.2 101 chrX 18558787 intron Bx + chrX 18558838 intron Bx + chrX 18558888 intron Bx + chrX_7_18555001 chrX_18555001 RAL-228 1185 chrX 18645020 18645047 chrX 18645118 18645143 5 98 3.0 1.0 2.0 1.7 123 chrX 18645020 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645143 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-228 1186 chrX 18736477 18736486 chrX 18736660 18736674 4 188 5.0 1.5 3.2 1.0 197 chrX 18736477 intergenic not near genes chrX 18736576 intergenic not near genes chrX 18736674 intergenic not near genes chrX_4_18735001 chrX_18735001 RAL-228 1187 chrX 18817930 18817952 chrX 18818018 18818024 6 85 1.5 3.5 2.5 1.7 94 chrX 18817930 intron CG42450 + chrX 18817977 intron CG42450 + chrX 18818024 intron CG42450 + chrX_6_18815001 chrX_18815001 RAL-228 1188 chrX 18896529 18896543 chrX 18896640 18896654 4 111 1.0 1.0 1.0 2.0 125 chrX 18896529 3` UTR CG7349 + chrX 18896592 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-228 1189 chrX 19019130 19019149 chrX 19019277 19019296 6 147 3.0 0.0 1.5 2.4 166 chrX 19019130 intron CG43759 + chrX 19019213 intron CG43759 + chrX 19019296 intron CG43759 + chrX_6_19015001 chrX_19015001 RAL-228 1190 chrX 19136563 19136583 chrX 19143482 19143502 412 4 6919 1.0 2.5 1.8 1.4 6939 chrX 19136563 intergenic not near genes chrX 19140032 intergenic not near genes chrX 19143502 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-228 1191 chrX 19170587 19170600 chrX 19170707 19170720 4 120 5.5 2.5 4.0 0.8 133 chrX 19170587 5` UTR Inx5 - chrX 19170654 5` UTR Inx5 - chrX 19170720 5` UTR Inx5 - chrX_4_19170001 chrX_19170001 RAL-228 1192 chrX 19176209 19176221 chrX 19176293 19176305 4 84 4.5 1.5 3.0 1.0 96 chrX 19176209 3` UTR CG7556 - chrX 19176257 3` UTR CG7556 - chrX 19176305 3` UTR CG7556 - chrX_4_19175001 chrX_19175001 RAL-228 1193 chrX 13057298 13057300 chrX 19242812 19242814 8 6185514 3.0 1.0 2.0 2.7 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_8_16150001 chrX_16150001 RAL-228 1194 chrX 19404628 19404646 chrX 19404726 19404744 5 98 0.5 1.0 0.8 2.8 116 chrX 19404628 intron kek5 + chrX 19404686 intron kek5 + chrX 19404744 intron kek5 + chrX_5_19400001 chrX_19400001 RAL-228 1195 chrX 19472150 19472157 chrX 19472719 19472727 jockey 4 570 1.0 3.0 2.0 1.3 577 chrX 19472150 intergenic kek5 + chrX 19472438 intergenic not near genes chrX 19472727 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-228 1196 chrX 19594838 19594869 chrX 19594915 19594945 6 75 5.0 4.0 4.5 1.1 107 chrX 19594838 exon CG14205 + chrX 19594892 exon CG14205 + chrX 19594945 exon CG14205 + chrX_6_19590001 chrX_19590001 RAL-228 1197 chrX 19710074 19710094 chrX 19711859 19711880 S-element 5 1786 3.0 3.5 3.2 1.2 1806 chrX 19710074 intron meso18E - chrX 19710977 intron meso18E - chrX 19711880 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-228 1198 chrX 19744651 19744662 chrX 19744754 19744787 5 114 16.0 14.5 15.2 0.3 136 chrX 19744651 5` UTR,exon CG33932 +,Rpp20 + chrX 19744719 intron,intron CG33932 +,Rpp20 + chrX 19744787 5` UTR,exon CG33932 +,Rpp20 + chrX_5_19740001 chrX_19740001 RAL-228 1199 chrX 19769510 19769532 chrX 19769587 19769608 4 77 1.5 0.0 0.8 2.2 98 chrX 19769510 intron vfl - chrX 19769559 intron vfl - chrX 19769608 intron vfl - chrX_4_19765001 chrX_19765001 RAL-228 1200 chrX 19881467 19881485 chrX 19881545 19881566 6 80 1.0 1.0 1.0 3.0 99 chrX 19881467 intron Hers + chrX 19881516 intron Hers + chrX 19881566 intron Hers + chrX_6_19880001 chrX_19880001 RAL-228 1201 chrX 19981998 19982021 chrX 19982086 19982089 6 82 1.5 2.5 2.0 2.0 91 chrX 19981998 intergenic not near genes chrX 19982044 intergenic not near genes chrX 19982089 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-228 1202 chrX 19992419 19992428 chrX 19992492 19992504 6 76 5.5 6.5 6.0 0.9 85 chrX 19992419 intergenic not near genes chrX 19992462 intergenic not near genes chrX 19992504 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-228 1203 chrX 20052796 20052808 chrX 20052871 20052890 8 80 2.0 0.0 1.0 4.0 94 chrX 20052796 intron Dop2R - chrX 20052843 intron Dop2R - chrX 20052890 intron Dop2R - chrX_8_20050001 chrX_20050001 RAL-228 1204 chrX 20069263 20069297 chrX 20069396 20069426 8 132 1.5 1.0 1.2 3.6 163 chrX 20069263 intergenic not near genes chrX 20069344 intergenic not near genes chrX 20069426 intergenic not near genes chrX_8_20065001 chrX_20065001 RAL-228 1205 chrX 20126880 20126909 chrX 20127345 20127374 6 465 1.5 0.5 1.0 3.0 494 chrX 20126880 intergenic not near genes chrX 20127127 intergenic not near genes chrX 20127374 intergenic not near genes chrX_6_20125001 chrX_20125001 RAL-228 1206 chrX 20257752 20257769 chrX 20257838 20257855 4 86 3.5 0.5 2.0 1.3 103 chrX 20257752 intergenic not near genes chrX 20257804 intergenic not near genes chrX 20257855 intergenic not near genes chrX_4_20255001 chrX_20255001 RAL-228 1207 chrX 20369325 20369341 chrX 20369409 20369425 4 84 0.5 2.0 1.2 1.8 100 chrX 20369325 intergenic not near genes chrX 20369375 intergenic not near genes chrX 20369425 intergenic not near genes chrX_4_20365001 chrX_20365001 RAL-228 1208 chrX 20377326 20377341 chrX 20378791 20378808 hobo 4 1466 4.0 4.0 4.0 0.8 1482 chrX 20377326 intergenic not near genes chrX 20378067 intergenic not near genes chrX 20378808 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-228 1209 chrX 20499157 20499183 chrX 20499240 20499266 10 82 2.5 2.0 2.2 3.1 109 chrX 20499157 intron RhoGAP19D - chrX 20499212 intron RhoGAP19D - chrX 20499266 intron RhoGAP19D - chrX_10_20495001 chrX_20495001 RAL-228 1210 chrX 20575161 20575172 chrX 20575239 20575250 5 78 1.0 0.5 0.8 2.8 89 chrX 20575161 intergenic CG42580 + chrX 20575206 intergenic not near genes chrX 20575250 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-228 1211 chrX 20940719 20940755 chrX 20942188 20942208 hobo 9 1465 1.0 2.0 1.5 3.6 1489 chrX 20940719 intergenic not near genes chrX 20941464 intergenic not near genes chrX 20942208 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-228 1212 chrX 21042568 21042588 chrX 21045353 21045373 7 2785 18.5 22.0 20.2 0.3 2805 chrX 21042568 exon Mgstl + chrX 21043970 exon,3` UTR Mgstl +,CR44431 - chrX 21045373 intron Cbs + chrX_7_21040001 chrX_21040001 RAL-228 1213 chrX 21086134 21086159 chrX 21087163 21087188 jockey 5 1028 1.5 1.0 1.2 2.3 1054 chrX 21086134 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087188 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-228 1214 chrX 21264730 21264762 chrX 21264805 21264838 6 76 2.0 0.5 1.2 2.7 108 chrX 21264730 intron CG32521 - chrX 21264784 intron CG32521 - chrX 21264838 intron CG32521 - chrX_6_21260001 chrX_21260001 RAL-228 1215 chrX 21275177 21275193 chrX 21275255 21275271 4 78 0.0 1.0 0.5 2.7 94 chrX 21275177 intron CG32521 - chrX 21275224 intron CG32521 - chrX 21275271 intron CG32521 - chrX_4_21275001 chrX_21275001 RAL-228 1216 chrX 21500562 21500589 chrX 21500763 21500790 5 201 0.0 3.0 1.5 2.0 228 chrX 21500562 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500790 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-228 1217 chrX 21517006 21517019 chrX 21517085 21517098 6 79 2.5 5.0 3.8 1.2 92 chrX 21517006 intron CR45082 - chrX 21517052 intron CR45082 - chrX 21517098 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-228 1218 chrX 22520486 22520506 chrX 22520603 22520623 4 117 0.5 3.5 2.0 1.3 137 chrX 22520486 intron CG17600 + chrX 22520554 intron CG17600 + chrX 22520623 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-228 1219 chrX 22870877 22870901 chrX 22870967 22870992 6 90 0.5 2.0 1.2 2.7 115 chrX 22870877 intron,3` UTR CG42346 +,CR43656 - chrX 22870934 intron,3` UTR CG42346 +,CR43656 - chrX 22870992 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-228 1220 chrX 22895724 22895754 chrX 22895842 22895872 9 118 2.0 1.5 1.8 3.2 148 chrX 22895724 intergenic not near genes chrX 22895798 intergenic not near genes chrX 22895872 intergenic not near genes chrX_9_22895001 chrX_22895001 RAL-228 1221 chrX 22996323 22996338 chrX 23003555 23003570 roo 5 7232 0.5 0.5 0.5 3.3 7247 chrX 22996323 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003570 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 RAL-228 1222 chrY 975792 975826 chrY 975872 975933 12 82 120.5 121.0 120.8 0.1 141 chrY 975792 intergenic not near genes chrY 975862 intergenic not near genes chrY 975933 intergenic not near genes chrY_12_975001 chrY_975001 RAL-228