SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47472 47485 chr2L 52577 52590 jockey 5 5104 4.5 6.0 5.2 0.8 5118 chr2L 47472 intron Cda5 - chr2L 50031 intron Cda5 - chr2L 52590 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-227 2 chr2L 89717 89738 chr2L 89792 89812 9 76 3.5 2.5 3.0 2.2 95 chr2L 89717 intergenic not near genes chr2L 89764 intergenic not near genes chr2L 89812 intergenic not near genes chr2L_9_85001 chr2L_85001 RAL-227 3 chr2L 347888 347915 chr2L 355388 355415 blood 7 7500 1.0 2.0 1.5 2.8 7527 chr2L 347888 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355415 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-227 4 chr2L 467357 467367 chr2L 467456 467466 6 99 4.5 3.0 3.8 1.2 109 chr2L 467357 intron CG4297 - chr2L 467412 intron CG4297 - chr2L 467466 intron CG4297 - chr2L_6_465001 chr2L_465001 RAL-227 5 chr2L 565900 565914 chr2L 570318 570347 9 4420 14.0 16.5 15.2 0.6 4447 chr2L 565900 exon CG2794 + chr2L 568124 intergenic Nle -,CG2807 + chr2L 570347 exon CG2807 + chr2L_9_565001 chr2L_565001 RAL-227 6 chr2L 597169 597172 chr2L 597288 597315 7 123 19.0 18.5 18.8 0.4 146 chr2L 597169 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597315 intergenic not near genes chr2L_7_595001 chr2L_595001 RAL-227 7 chr2L 666279 666302 chr2L 666355 666378 7 76 0.0 0.0 0.0 7.0 99 chr2L 666279 intron ds - chr2L 666328 intron ds - chr2L 666378 intron ds - chr2L_7_665001 chr2L_665001 RAL-227 8 chr2L 668431 668462 chr2L 668511 668542 12 80 3.5 2.5 3.0 3.0 111 chr2L 668431 intron ds - chr2L 668486 intron ds - chr2L 668542 intron ds - chr2L_12_665001 chr2L_665001 RAL-227 9 chr2L 686922 686948 chr2L 695962 695985 roo 5 9039 1.0 4.0 2.5 1.4 9063 chr2L 686922 intron ds - chr2L 691454 intron ds - chr2L 695985 intron ds - chr2L_5_690001 chr2L_690001 RAL-227 10 chr2L 736882 736901 chr2L 736987 737006 6 105 1.0 1.0 1.0 3.0 124 chr2L 736882 intergenic Eaat2 - chr2L 736944 intergenic Eaat2 - chr2L 737006 intergenic Eaat2 - chr2L_6_735001 chr2L_735001 RAL-227 11 chr2L 741560 741577 chr2L 741637 741654 8 76 2.0 4.5 3.2 1.9 94 chr2L 741560 intron Eaat2 - chr2L 741607 intron Eaat2 - chr2L 741654 intron Eaat2 - chr2L_8_740001 chr2L_740001 RAL-227 12 chr2L 764553 764570 chr2L 764653 764670 6 100 3.0 2.0 2.5 1.7 117 chr2L 764553 intergenic not near genes chr2L 764612 intergenic not near genes chr2L 764670 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-227 13 chr2L 795268 795288 chr2L 795377 795397 5 108 3.5 0.0 1.8 1.8 129 chr2L 795268 intergenic not near genes chr2L 795332 intergenic not near genes chr2L 795397 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-227 14 chr2L 877847 877862 chr2L 877928 877942 4 80 3.0 3.0 3.0 1.0 95 chr2L 877847 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-227 15 chr2L 922474 922492 chr2L 922554 922572 5 80 2.0 2.0 2.0 1.7 98 chr2L 922474 intergenic CG4341 + chr2L 922523 intergenic CG4341 + chr2L 922572 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-227 16 chr2L 936583 936587 chr2L 936670 936677 5 89 0.0 0.5 0.2 4.2 94 chr2L 936583 intron CG4341 + chr2L 936630 intron CG4341 + chr2L 936677 intron CG4341 + chr2L_5_935001 chr2L_935001 RAL-227 17 chr2L 976894 976905 chr2L 984526 984541 roo 7 7635 3.0 0.5 1.8 2.5 7647 chr2L 976894 intergenic not near genes chr2L 980718 intergenic not near genes chr2L 984541 intergenic not near genes chr2L_7_980001 chr2L_980001 RAL-227 18 chr2L 1035568 1035589 chr2L 1035645 1035666 5 77 2.5 2.5 2.5 1.4 98 chr2L 1035568 intron IA-2 - chr2L 1035617 intron IA-2 - chr2L 1035666 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-227 19 chr2L 1121133 1121167 chr2L 1121219 1121249 10 81 0.0 4.0 2.0 3.3 116 chr2L 1121133 intron Pino - chr2L 1121191 intron Pino - chr2L 1121249 intron Pino - chr2L_10_1120001 chr2L_1120001 RAL-227 20 chr2L 1164245 1164283 chr2L 1164331 1164369 9 86 1.5 2.0 1.8 3.2 124 chr2L 1164245 intergenic IntS14 +,CG5080 - chr2L 1164307 intergenic IntS14 +,CG5080 - chr2L 1164369 intergenic IntS14 +,CG5080 - chr2L_9_1160001 chr2L_1160001 RAL-227 21 chr2L 1178677 1178707 chr2L 1178761 1178791 9 83 0.5 3.0 1.8 3.2 114 chr2L 1178677 intron CG4896 + chr2L 1178734 intron CG4896 + chr2L 1178791 intron CG4896 + chr2L_9_1175001 chr2L_1175001 RAL-227 22 chr2L 1220135 1220151 chr2L 1227601 1227616 blood 6 7466 3.5 1.5 2.5 1.7 7481 chr2L 1220135 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227616 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-227 23 chr2L 1301752 1301779 chr2L 1302291 1302318 gypsy 6 539 2.5 1.0 1.8 2.1 566 chr2L 1301752 intergenic not near genes chr2L 1302035 intergenic not near genes chr2L 1302318 intergenic not near genes chr2L_6_1300001 chr2L_1300001 RAL-227 24 chr2L 1399170 1399200 chr2L 1399292 1399322 8 121 0.0 2.0 1.0 4.0 152 chr2L 1399170 intron lea - chr2L 1399246 intron lea - chr2L 1399322 intron lea - chr2L_8_1395001 chr2L_1395001 RAL-227 25 chr2L 1570688 1570719 chr2L 1573560 1573591 F-element 6 2872 2.0 2.0 2.0 2.0 2903 chr2L 1570688 intron haf + chr2L 1572140 intron haf + chr2L 1573591 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-227 26 chr2L 1584156 1584175 chr2L 1584395 1584414 7 240 7.5 5.0 6.2 1.0 258 chr2L 1584156 intron haf + chr2L 1584285 intron haf + chr2L 1584414 intron haf + chr2L_7_1580001 chr2L_1580001 RAL-227 27 chr2L 1584132 1584140 chr2L 1584330 1584343 8 199 7.5 8.5 8.0 0.9 211 chr2L 1584132 intron haf + chr2L 1584238 intron haf + chr2L 1584343 intron haf + chr2L_8_1580001 chr2L_1580001 RAL-227 28 chr2L 1590966 1590973 chr2L 1591034 1591049 4 74 6.5 1.5 4.0 0.8 83 chr2L 1590966 intron haf + chr2L 1591008 intron haf + chr2L 1591049 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-227 29 chr2L 1597860 1597888 chr2L 1597935 1597964 6 74 2.5 2.5 2.5 1.7 104 chr2L 1597860 intron,intron haf +,CG31935 - chr2L 1597912 intron,intron haf +,CG31935 - chr2L 1597964 intron,intron haf +,CG31935 - chr2L_6_1595001 chr2L_1595001 RAL-227 30 chr2L 1678977 1679008 chr2L 1686442 1686473 blood 7 7465 0.5 2.5 1.5 2.8 7496 chr2L 1678977 intron chinmo + chr2L 1682725 intron chinmo + chr2L 1686473 intron chinmo + chr2L_7_1680001 chr2L_1680001 RAL-227 31 chr2L 1785673 1785694 chr2L 1785764 1785784 7 89 3.5 3.5 3.5 1.6 111 chr2L 1785673 intergenic Gr22e + chr2L 1785728 intergenic Gr22e + chr2L 1785784 intergenic Gr22e + chr2L_7_1785001 chr2L_1785001 RAL-227 32 chr2L 1849331 1849351 chr2L 1849422 1849442 6 91 0.5 0.0 0.2 5.0 111 chr2L 1849331 intron wry + chr2L 1849386 intron wry + chr2L 1849442 intron wry + chr2L_6_1845001 chr2L_1845001 RAL-227 33 chr2L 1901497 1901527 chr2L 1901572 1901604 7 74 1.5 2.5 2.0 2.3 107 chr2L 1901497 intron CG7337 + chr2L 1901550 intron CG7337 + chr2L 1901604 intron CG7337 + chr2L_7_1900001 chr2L_1900001 RAL-227 34 chr2L 1905091 1905110 chr2L 1905194 1905212 4 103 1.0 1.5 1.2 1.8 121 chr2L 1905091 intron CG7337 + chr2L 1905152 intron CG7337 + chr2L 1905212 intron CG7337 + chr2L_4_1905001 chr2L_1905001 RAL-227 35 chr2L 2100379 2100408 chr2L 2109530 2109559 roo 10 9151 1.5 1.5 1.5 4.0 9180 chr2L 2100379 intron dpr3 - chr2L 2104969 intron dpr3 - chr2L 2109559 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-227 36 chr2L 2112119 2112137 chr2L 2119773 2119796 opus 4 7655 1.0 1.5 1.2 1.8 7677 chr2L 2112119 intergenic not near genes chr2L 2115958 intergenic not near genes chr2L 2119796 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-227 37 chr2L 2134197 2134225 chr2L 2134324 2134353 7 128 1.0 2.5 1.8 2.5 156 chr2L 2134197 intron GlyP + chr2L 2134275 intron GlyP + chr2L 2134353 intron GlyP + chr2L_7_2130001 chr2L_2130001 RAL-227 38 chr2L 2260811 2260836 chr2L 2260897 2260922 5 86 2.5 4.5 3.5 1.1 111 chr2L 2260811 intergenic not near genes chr2L 2260866 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-227 39 chr2L 2303507 2303535 chr2L 2303590 2303614 7 82 1.0 1.5 1.2 3.2 107 chr2L 2303507 intergenic not near genes chr2L 2303560 intergenic not near genes chr2L 2303614 intergenic not near genes chr2L_7_2300001 chr2L_2300001 RAL-227 40 chr2L 2317599 2317623 chr2L 2317672 2317681 4 70 10.5 6.0 8.2 0.4 82 chr2L 2317599 intron,intron CG9967 -,eys + chr2L 2317640 intron,intron CG9967 -,eys + chr2L 2317681 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-227 41 chr2L 2334035 2334064 chr2L 2335094 2335123 6 1059 1.0 2.5 1.8 2.1 1088 chr2L 2334035 intron,intron CG9967 -,eys + chr2L 2334579 intron,intron CG9967 -,eys + chr2L 2335123 intron,intron CG9967 -,eys + chr2L_6_2330001 chr2L_2330001 RAL-227 42 chr2L 2372364 2372403 chr2L 2372450 2372483 5 85 0.0 0.5 0.2 4.2 119 chr2L 2372364 intergenic CG3609 - chr2L 2372424 intergenic CG3609 - chr2L 2372483 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-227 43 chr2L 2618035 2618070 chr2L 2618114 2618149 12 78 1.5 2.5 2.0 4.0 114 chr2L 2618035 intergenic not near genes chr2L 2618092 intergenic not near genes chr2L 2618149 intergenic not near genes chr2L_12_2615001 chr2L_2615001 RAL-227 44 chr2L 2620629 2620651 chr2L 2620733 2620755 5 104 0.0 2.5 1.2 2.3 126 chr2L 2620629 3` UTR CG43403 + chr2L 2620692 3` UTR CG43403 + chr2L 2620755 3` UTR CG43403 + chr2L_5_2620001 chr2L_2620001 RAL-227 45 chr2L 2661213 2661233 chr2L 2663034 2663071 I-element 6 1830 1.5 0.5 1.0 3.0 1858 chr2L 2661213 intergenic not near genes chr2L 2662142 intergenic not near genes chr2L 2663071 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-227 46 chr2L 2698876 2698893 chr2L 2698963 2698977 6 86 0.5 2.0 1.2 2.7 101 chr2L 2698876 intron CG31690 + chr2L 2698926 intron CG31690 + chr2L 2698977 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-227 47 chr2L 2713511 2713547 chr2L 2713610 2713646 13 96 2.5 2.5 2.5 3.7 135 chr2L 2713511 intron CG31690 + chr2L 2713578 intron CG31690 + chr2L 2713646 intron CG31690 + chr2L_13_2710001 chr2L_2710001 RAL-227 48 chr2L 2895687 2895718 chr2L 2895772 2895795 6 84 1.5 3.0 2.2 1.9 108 chr2L 2895687 intron lilli + chr2L 2895741 intron lilli + chr2L 2895795 intron lilli + chr2L_6_2895001 chr2L_2895001 RAL-227 49 chr2L 2937418 2937449 chr2L 2937495 2937526 8 77 1.5 0.5 1.0 4.0 108 chr2L 2937418 intron lilli + chr2L 2937472 intron lilli + chr2L 2937526 intron lilli + chr2L_8_2935001 chr2L_2935001 RAL-227 50 chr2L 3073033 3073061 chr2L 3078234 3078264 copia 10 5203 1.0 2.0 1.5 4.0 5231 chr2L 3073033 intron toc - chr2L 3075648 intron toc - chr2L 3078264 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-227 51 chr2L 3108866 3108889 chr2L 3108942 3108966 7 77 3.0 0.0 1.5 2.8 100 chr2L 3108866 intron toc - chr2L 3108916 intron toc - chr2L 3108966 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-227 52 chr2L 3291252 3291270 chr2L 3291332 3291350 7 79 2.5 4.0 3.2 1.7 98 chr2L 3291252 3` UTR CG9664 - chr2L 3291301 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-227 53 chr2L 3388624 3388631 chr2L 3388865 3388870 pogo 4 240 2.0 3.0 2.5 1.1 246 chr2L 3388624 intergenic CG42460 - chr2L 3388747 intergenic CG42460 - chr2L 3388870 intergenic CG42460 -,CR44791 + chr2L_4_3385001 chr2L_3385001 RAL-227 54 chr2L 3393057 3393088 chr2L 3393146 3393177 7 87 4.0 2.5 3.2 1.7 120 chr2L 3393057 intergenic not near genes chr2L 3393117 intergenic not near genes chr2L 3393177 intergenic not near genes chr2L_7_3390001 chr2L_3390001 RAL-227 55 chr2L 3395031 3395048 chr2L 3395113 3395130 4 82 2.5 4.5 3.5 0.9 99 chr2L 3395031 intergenic not near genes chr2L 3395080 intergenic not near genes chr2L 3395130 intergenic not near genes chr2L_4_3395001 chr2L_3395001 RAL-227 56 chr2L 3663305 3663342 chr2L 3663384 3663421 11 79 3.5 3.5 3.5 2.4 116 chr2L 3663305 5` UTR CG34340 + chr2L 3663363 intron CG34340 + chr2L 3663421 intron CG34340 + chr2L_11_3660001 chr2L_3660001 RAL-227 57 chr2L 3707561 3707589 chr2L 3707645 3707673 8 84 1.5 2.5 2.0 2.7 112 chr2L 3707561 exon cutlet - chr2L 3707617 intron cutlet - chr2L 3707673 intron cutlet - chr2L_8_3705001 chr2L_3705001 RAL-227 58 chr2L 3785473 3785498 chr2L 3785549 3785574 10 76 13.0 10.5 11.8 0.8 101 chr2L 3785473 exon CG31960 + chr2L 3785524 3` UTR CG31960 + chr2L 3785574 3` UTR CG31960 + chr2L_10_3785001 chr2L_3785001 RAL-227 59 chr2L 3891896 3891927 chr2L 3891981 3892009 7 84 0.5 1.0 0.8 3.9 113 chr2L 3891896 intron capu - chr2L 3891952 intron capu - chr2L 3892009 intron capu - chr2L_7_3890001 chr2L_3890001 RAL-227 60 chr2L 4089748 4089755 chr2L 4089836 4089844 5 88 4.5 1.0 2.8 1.3 96 chr2L 4089748 intron ed + chr2L 4089796 intron ed + chr2L 4089844 intron ed + chr2L_5_4085001 chr2L_4085001 RAL-227 61 chr2L 4103908 4103933 chr2L 4103991 4104016 7 83 1.0 1.0 1.0 3.5 108 chr2L 4103908 intron ed + chr2L 4103962 intron ed + chr2L 4104016 intron ed + chr2L_7_4100001 chr2L_4100001 RAL-227 62 chr2L 4181298 4181303 chr2L 4183929 4183935 Burdock 4 2632 0.5 5.0 2.8 1.1 2637 chr2L 4181298 intergenic not near genes chr2L 4182616 intergenic not near genes chr2L 4183935 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-227 63 chr2L 4351472 4351493 chr2L 4351548 4351569 6 76 3.0 0.0 1.5 2.4 97 chr2L 4351472 intergenic CR44700 + chr2L 4351520 intergenic CR44700 + chr2L 4351569 intergenic CR44700 + chr2L_6_4350001 chr2L_4350001 RAL-227 64 chr2L 4389506 4389533 chr2L 4389607 4389634 6 100 2.0 2.0 2.0 2.0 128 chr2L 4389506 intron Tps1 + chr2L 4389570 intron Tps1 + chr2L 4389634 intron Tps1 + chr2L_6_4385001 chr2L_4385001 RAL-227 65 chr2L 4601702 4601731 chr2L 4609143 4609172 mdg1 7 7440 2.5 1.5 2.0 2.3 7470 chr2L 4601702 intron dp - chr2L 4605437 intron dp - chr2L 4609172 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-227 66 chr2L 4748692 4748725 chr2L 4748771 4748804 9 79 1.0 1.5 1.2 4.1 112 chr2L 4748692 intron CG15630 - chr2L 4748748 intron CG15630 - chr2L 4748804 intron CG15630 - chr2L_9_4745001 chr2L_4745001 RAL-227 67 chr2L 4819494 4819515 chr2L 4819617 4819638 10 122 2.0 2.5 2.2 3.1 144 chr2L 4819494 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819638 intergenic not near genes chr2L_10_4815001 chr2L_4815001 RAL-227 68 chr2L 4862276 4862304 chr2L 4862352 4862380 6 76 2.0 2.5 2.2 1.9 104 chr2L 4862276 intron pog + chr2L 4862328 intron pog + chr2L 4862380 intron pog + chr2L_6_4860001 chr2L_4860001 RAL-227 69 chr2L 5064675 5064687 chr2L 5064941 5064953 5 266 5.0 0.0 2.5 1.4 278 chr2L 5064675 intron qtc + chr2L 5064814 intron qtc + chr2L 5064953 intron qtc + chr2L_5_5060001 chr2L_5060001 RAL-227 70 chr2L 5342791 5342803 chr2L 5345171 5345180 Doc 4 2379 4.5 7.0 5.8 0.6 2389 chr2L 5342791 intergenic not near genes chr2L 5343986 intergenic not near genes chr2L 5345180 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-227 71 chr2L 5349396 5349422 chr2L 5349473 5349496 6 76 1.0 2.5 1.8 2.1 100 chr2L 5349396 intron nompC + chr2L 5349446 intron nompC + chr2L 5349496 intron nompC + chr2L_6_5345001 chr2L_5345001 RAL-227 72 chr2L 5445510 5445530 chr2L 5445598 5445618 5 88 1.5 2.0 1.8 1.8 108 chr2L 5445510 intergenic not near genes chr2L 5445564 intergenic not near genes chr2L 5445618 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-227 73 chr2L 5672170 5672199 chr2L 5672251 5672280 6 80 1.5 1.0 1.2 2.7 110 chr2L 5672170 intergenic not near genes chr2L 5672225 intergenic not near genes chr2L 5672280 intergenic not near genes chr2L_6_5670001 chr2L_5670001 RAL-227 74 chr2L 5688668 5688690 chr2L 5688749 5688771 5 81 1.0 2.0 1.5 2.0 103 chr2L 5688668 intergenic not near genes chr2L 5688720 intergenic not near genes chr2L 5688771 intergenic not near genes chr2L_5_5685001 chr2L_5685001 RAL-227 75 chr2L 5720261 5720294 chr2L 5720348 5720381 6 87 2.0 3.0 2.5 1.7 120 chr2L 5720261 intron CG11149 - chr2L 5720321 intron CG11149 - chr2L 5720381 intron CG11149 - chr2L_6_5720001 chr2L_5720001 RAL-227 76 chr2L 5827716 5827741 chr2L 5836724 5836749 roo 9 9008 3.5 2.5 3.0 2.2 9033 chr2L 5827716 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-227 77 chr2L 5926267 5926454 chr2L 5926347 5926542 4 86 0.0 0.0 0.0 4.0 275 chr2L 5926267 intron dsf + chr2L 5926404 intron dsf + chr2L 5926542 intron dsf + chr2L_4_5925001 chr2L_5925001 RAL-227 78 chr2L 6021622 6021641 chr2L 6021700 6021702 9 74 2.0 0.0 1.0 4.5 80 chr2L 6021622 exon CG13996 + chr2L 6021662 exon CG13996 + chr2L 6021702 3` UTR CG13996 + chr2L_9_6020001 chr2L_6020001 RAL-227 79 chr2L 6025554 6025580 chr2L 6025641 6025667 6 86 4.0 2.5 3.2 1.4 113 chr2L 6025554 intergenic CG9109 - chr2L 6025610 intergenic CG9109 - chr2L 6025667 intergenic CG9109 - chr2L_6_6025001 chr2L_6025001 RAL-227 80 chr2L 6111245 6111263 chr2L 6111431 6111449 5 186 2.5 0.5 1.5 2.0 204 chr2L 6111245 intron stai + chr2L 6111347 intron stai + chr2L 6111449 intron stai + chr2L_5_6110001 chr2L_6110001 RAL-227 81 chr2L 6185038 6185061 chr2L 6185112 6185141 4 74 1.0 1.0 1.0 2.0 103 chr2L 6185038 intron CG34380 + chr2L 6185090 intron CG34380 + chr2L 6185141 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-227 82 chr2L 6185449 6185470 chr2L 6185527 6185546 4 76 1.0 2.5 1.8 1.4 97 chr2L 6185449 intron CG34380 + chr2L 6185498 intron CG34380 + chr2L 6185546 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-227 83 chr2L 6192191 6192202 chr2L 6192657 6192668 5 466 3.5 1.5 2.5 1.4 477 chr2L 6192191 intron CG34380 + chr2L 6192430 intron CG34380 + chr2L 6192668 intron CG34380 + chr2L_5_6190001 chr2L_6190001 RAL-227 84 chr2L 6300561 6300591 chr2L 6300645 6300677 8 82 2.5 3.0 2.8 2.1 116 chr2L 6300561 intron Ddr + chr2L 6300619 intron Ddr + chr2L 6300677 intron Ddr + chr2L_8_6300001 chr2L_6300001 RAL-227 85 chr2L 6318738 6318762 chr2L 6318892 6318914 11 154 4.5 0.0 2.2 3.4 176 chr2L 6318738 intron Ddr + chr2L 6318826 intron Ddr + chr2L 6318914 intron Ddr + chr2L_11_6315001 chr2L_6315001 RAL-227 86 chr2L 6363167 6363183 chr2L 6366089 6366100 Burdock 5 2921 0.5 4.0 2.2 1.6 2933 chr2L 6363167 intergenic not near genes chr2L 6364634 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-227 87 chr2L 6426854 6426886 chr2L 6445114 6445146 roo 7 18259 0.0 2.0 1.0 3.5 18292 chr2L 6426854 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-227 88 chr2L 6544371 6544393 chr2L 6544462 6544475 5 90 3.0 1.5 2.2 1.6 104 chr2L 6544371 intron eya - chr2L 6544423 intron eya - chr2L 6544475 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-227 89 chr2L 6564843 6564879 chr2L 6564936 6564972 5 93 1.5 1.0 1.2 2.3 129 chr2L 6564843 3` UTR CG13766 - chr2L 6564908 3` UTR CG13766 - chr2L 6564972 3` UTR CG13766 - chr2L_5_6560001 chr2L_6560001 RAL-227 90 chr2L 6598120 6598147 chr2L 6599077 6599104 5 955 0.5 1.5 1.0 2.5 984 chr2L 6598120 intron CG11319 - chr2L 6598612 intron CG11319 - chr2L 6599104 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-227 91 chr2L 6771987 6772017 chr2L 6772071 6772101 5 81 2.5 3.0 2.8 1.3 114 chr2L 6771987 intron CG11321 - chr2L 6772044 intron CG11321 - chr2L 6772101 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-227 92 chr2L 6850394 6850428 chr2L 6850500 6850534 6 106 1.0 1.5 1.2 2.7 140 chr2L 6850394 intergenic not near genes chr2L 6850464 intergenic not near genes chr2L 6850534 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-227 93 chr2L 6872630 6872648 chr2L 6872711 6872731 5 82 1.0 4.5 2.8 1.3 101 chr2L 6872630 intergenic CR44914 +,CR44915 - chr2L 6872680 intergenic CR44914 +,CR44915 - chr2L 6872731 5` UTR CR44914 + chr2L_5_6870001 chr2L_6870001 RAL-227 94 chr2L 6876782 6876810 chr2L 6882972 6882999 diver 4 6181 2.5 2.5 2.5 1.1 6217 chr2L 6876782 intron Nlg2 + chr2L 6879890 intron Nlg2 + chr2L 6882999 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-227 95 chr2L 7005246 7005254 chr2L 7005338 7005350 4 95 1.5 0.5 1.0 2.0 104 chr2L 7005246 intron uif - chr2L 7005298 intron uif - chr2L 7005350 intron uif - chr2L_4_7005001 chr2L_7005001 RAL-227 96 chr2L 7042073 7042088 chr2L 7042162 7042174 4 88 1.5 1.5 1.5 1.6 101 chr2L 7042073 intron milt + chr2L 7042124 intron milt + chr2L 7042174 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-227 97 chr2L 7077355 7077380 chr2L 7077431 7077457 6 77 3.5 0.5 2.0 2.0 102 chr2L 7077355 intron Pvf2 - chr2L 7077406 intron Pvf2 - chr2L 7077457 intron Pvf2 - chr2L_6_7075001 chr2L_7075001 RAL-227 98 chr2L 7111775 7111783 chr2L 7111860 7111868 4 85 1.5 0.0 0.8 2.2 93 chr2L 7111775 intron Pvf3 - chr2L 7111822 intron Pvf3 - chr2L 7111868 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-227 99 chr2L 7165785 7165796 chr2L 7165866 7165877 5 80 1.5 1.5 1.5 2.0 92 chr2L 7165785 intergenic not near genes chr2L 7165831 intergenic not near genes chr2L 7165877 intergenic not near genes chr2L_5_7165001 chr2L_7165001 RAL-227 100 chr2L 7218400 7218415 chr2L 7218478 7218493 6 78 0.5 2.0 1.2 2.7 93 chr2L 7218400 intron CG13784 - chr2L 7218446 intron CG13784 - chr2L 7218493 intron CG13784 - chr2L_6_7215001 chr2L_7215001 RAL-227 101 chr2L 7301298 7301325 chr2L 7301381 7301408 6 83 1.5 1.5 1.5 2.4 110 chr2L 7301298 intergenic not near genes chr2L 7301353 intergenic not near genes chr2L 7301408 intergenic not near genes chr2L_6_7300001 chr2L_7300001 RAL-227 102 chr2L 7325173 7325200 chr2L 7325279 7325306 6 105 3.5 2.0 2.8 1.6 133 chr2L 7325173 intergenic not near genes chr2L 7325240 intergenic not near genes chr2L 7325306 intergenic not near genes chr2L_6_7325001 chr2L_7325001 RAL-227 103 chr2L 7363524 7363554 chr2L 7363602 7363632 5 78 2.5 2.0 2.2 1.6 108 chr2L 7363524 5` UTR Wnt10 + chr2L 7363578 5` UTR Wnt10 + chr2L 7363632 5` UTR Wnt10 + chr2L_5_7360001 chr2L_7360001 RAL-227 104 chr2L 7513775 7513798 chr2L 7513852 7513875 9 77 0.5 3.0 1.8 3.2 100 chr2L 7513775 intron RapGAP1 - chr2L 7513825 intron RapGAP1 - chr2L 7513875 intron RapGAP1 - chr2L_9_7510001 chr2L_7510001 RAL-227 105 chr2L 7579897 7579913 chr2L 7579978 7579995 4 82 1.5 4.5 3.0 1.0 98 chr2L 7579897 intergenic not near genes chr2L 7579946 intergenic not near genes chr2L 7579995 intergenic not near genes chr2L_4_7575001 chr2L_7575001 RAL-227 106 chr2L 7867564 7867598 chr2L 7867658 7867692 5 94 1.5 0.5 1.0 2.5 128 chr2L 7867564 intron Proc - chr2L 7867628 intron Proc - chr2L 7867692 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-227 107 chr2L 7922752 7922762 chr2L 7922833 7922843 5 81 5.0 2.5 3.8 1.0 91 chr2L 7922752 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922843 intron Snoo - chr2L_5_7920001 chr2L_7920001 RAL-227 108 chr2L 7959041 7959071 chr2L 7960452 7960467 pogo 6 1405 3.5 0.0 1.8 2.1 1426 chr2L 7959041 intron Snoo - chr2L 7959754 intron Snoo - chr2L 7960467 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-227 109 chr2L 7987780 7987813 chr2L 7987862 7987895 10 79 1.5 4.5 3.0 2.5 115 chr2L 7987780 3` UTR pes - chr2L 7987838 3` UTR pes - chr2L 7987895 exon pes - chr2L_10_7985001 chr2L_7985001 RAL-227 110 chr2L 8013616 8013641 chr2L 8018820 8018829 copia 4 5198 3.5 0.0 1.8 1.4 5213 chr2L 8013616 intron Tg + chr2L 8016222 intron Tg + chr2L 8018829 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-227 111 chr2L 8044097 8044129 chr2L 8044176 8044208 8 79 0.5 1.5 1.0 4.0 111 chr2L 8044097 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-227 112 chr2L 8167149 8167177 chr2L 8167240 8167268 10 90 2.0 3.5 2.8 2.6 119 chr2L 8167149 intron Piezo + chr2L 8167208 intron Piezo + chr2L 8167268 intron Piezo + chr2L_10_8165001 chr2L_8165001 RAL-227 113 chr2L 8184918 8184951 chr2L 8185009 8185042 6 91 1.0 2.0 1.5 2.4 124 chr2L 8184918 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185042 intron Piezo + chr2L_6_8180001 chr2L_8180001 RAL-227 114 chr2L 8285415 8285447 chr2L 8285506 8285537 4 91 2.0 3.5 2.8 1.1 122 chr2L 8285415 intron Btk29A - chr2L 8285476 intron Btk29A - chr2L 8285537 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-227 115 chr2L 8286294 8286326 chr2L 8286380 8286413 4 83 2.0 2.0 2.0 1.3 119 chr2L 8286294 intron Btk29A - chr2L 8286354 intron Btk29A - chr2L 8286413 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-227 116 chr2L 8345098 8345125 chr2L 8345180 8345207 5 82 2.0 4.5 3.2 1.2 109 chr2L 8345098 intergenic CR45371 - chr2L 8345152 intergenic CR45371 - chr2L 8345207 intergenic CR45371 - chr2L_5_8345001 chr2L_8345001 RAL-227 117 chr2L 8452419 8452449 chr2L 8461590 8461620 roo 6 9169 1.5 0.5 1.0 3.0 9201 chr2L 8452419 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461620 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-227 118 chr2L 8508988 8509002 chr2L 8509090 8509104 5 102 0.0 1.0 0.5 3.3 116 chr2L 8508988 intergenic CG13096 - chr2L 8509046 intergenic CG13096 - chr2L 8509104 3` UTR CG13096 - chr2L_5_8505001 chr2L_8505001 RAL-227 119 chr2L 8594463 8594490 chr2L 8601517 8601544 297 8 7054 3.5 2.0 2.8 2.1 7081 chr2L 8594463 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598004 intron Sema-1a + chr2L 8601544 intron Sema-1a + chr2L_8_8595001 chr2L_8595001 RAL-227 120 chr2L 8723113 8723148 chr2L 8731490 8731524 Tirant 8 8377 1.5 2.5 2.0 2.7 8411 chr2L 8723113 intron raw - chr2L 8727318 intron raw - chr2L 8731524 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-227 121 chr2L 8786560 8786572 chr2L 8786647 8786659 6 87 0.0 3.5 1.8 2.1 99 chr2L 8786560 intergenic not near genes chr2L 8786610 intergenic not near genes chr2L 8786659 intergenic not near genes chr2L_6_8785001 chr2L_8785001 RAL-227 122 chr2L 8788759 8788788 chr2L 8788847 8788879 7 90 1.0 1.5 1.2 3.2 120 chr2L 8788759 intergenic not near genes chr2L 8788819 intergenic not near genes chr2L 8788879 intergenic not near genes chr2L_7_8785001 chr2L_8785001 RAL-227 123 chr2L 8869469 8869475 chr2L 8869554 8869560 4 85 2.5 1.5 2.0 1.3 91 chr2L 8869469 intergenic not near genes chr2L 8869514 intergenic not near genes chr2L 8869560 intergenic not near genes chr2L_4_8865001 chr2L_8865001 RAL-227 124 chr2L 8993213 8993244 chr2L 8993314 8993346 7 101 18.0 21.5 19.8 0.3 133 chr2L 8993213 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993346 3` UTR CG9555 + chr2L_7_8990001 chr2L_8990001 RAL-227 125 chr2L 9000279 9000311 chr2L 9007789 9007820 roo 9 7509 2.5 2.0 2.2 2.8 7541 chr2L 9000279 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007820 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-227 126 chr2L 9040031 9040051 chr2L 9040118 9040138 7 87 2.5 1.0 1.8 2.5 107 chr2L 9040031 intergenic not near genes chr2L 9040084 intergenic not near genes chr2L 9040138 intergenic not near genes chr2L_7_9040001 chr2L_9040001 RAL-227 127 chr2L 9073269 9073299 chr2L 9073354 9073378 8 84 0.5 3.0 1.8 2.9 109 chr2L 9073269 intergenic not near genes chr2L 9073324 intergenic not near genes chr2L 9073378 intergenic not near genes chr2L_8_9070001 chr2L_9070001 RAL-227 128 chr2L 9084336 9084340 chr2L 16217660 16217660 10 7133321 7.5 7.5 7.5 1.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-227 129 chr2L 9118625 9118643 chr2L 9118775 9118791 5 150 3.0 2.5 2.8 1.3 166 chr2L 9118625 intergenic not near genes chr2L 9118708 intergenic not near genes chr2L 9118791 intergenic not near genes chr2L_5_9115001 chr2L_9115001 RAL-227 130 chr2L 9123400 9123406 chr2L 9123482 9123489 4 83 0.0 0.0 0.0 4.0 89 chr2L 9123400 intergenic not near genes chr2L 9123444 intergenic not near genes chr2L 9123489 intergenic not near genes chr2L_4_9120001 chr2L_9120001 RAL-227 131 chr2L 9202062 9202089 chr2L 9202137 9202165 11 73 1.5 4.0 2.8 2.9 103 chr2L 9202062 intron tai + chr2L 9202114 intron tai + chr2L 9202165 intron tai + chr2L_11_9200001 chr2L_9200001 RAL-227 132 chr2L 9217970 9218002 chr2L 9222756 9222789 Doc 5 4787 1.5 1.5 1.5 2.0 4819 chr2L 9217970 intron tai + chr2L 9220380 intron tai + chr2L 9222789 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-227 133 chr2L 9251146 9251174 chr2L 9251243 9251271 7 97 1.5 2.0 1.8 2.5 125 chr2L 9251146 intergenic aust -,borr - chr2L 9251208 intergenic aust -,borr - chr2L 9251271 intergenic borr -,aust - chr2L_7_9250001 chr2L_9250001 RAL-227 134 chr2L 9278892 9278916 chr2L 9278982 9279006 4 90 1.5 0.0 0.8 2.2 114 chr2L 9278892 intron Ggamma30A + chr2L 9278949 intron Ggamma30A + chr2L 9279006 intron Ggamma30A + chr2L_4_9275001 chr2L_9275001 RAL-227 135 chr2L 9283221 9283431 chr2L 9283319 9283513 10 84 0.0 0.0 0.0 10.0 292 chr2L 9283221 intron Ggamma30A + chr2L 9283367 intron Ggamma30A + chr2L 9283513 intron Ggamma30A + chr2L_10_9280001 chr2L_9280001 RAL-227 136 chr2L 9303473 9303493 chr2L 9303550 9303568 4 76 0.0 5.0 2.5 1.1 95 chr2L 9303473 intergenic not near genes chr2L 9303520 intergenic not near genes chr2L 9303568 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-227 137 chr2L 9317428 9317561 chr2L 9317546 9317838 4 237 0.0 0.0 0.0 4.0 410 chr2L 9317428 intergenic not near genes chr2L 9317633 intergenic not near genes chr2L 9317838 intergenic not near genes chr2L_4_9315001 chr2L_9315001 RAL-227 138 chr2L 9380293 9380322 chr2L 9380381 9380410 6 88 3.0 2.0 2.5 1.7 117 chr2L 9380293 intron Shawl - chr2L 9380352 intron Shawl - chr2L 9380410 intron Shawl - chr2L_6_9380001 chr2L_9380001 RAL-227 139 chr2L 9393504 9393528 chr2L 9396471 9396492 jockey 9 2966 2.5 4.5 3.5 2.0 2988 chr2L 9393504 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396492 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-227 140 chr2L 9441325 9441356 chr2L 9441429 9441460 13 103 0.5 0.5 0.5 8.7 135 chr2L 9441325 intron numb + chr2L 9441392 intron numb + chr2L 9441460 intron numb + chr2L_13_9440001 chr2L_9440001 RAL-227 141 chr2L 9498350 9498387 chr2L 9498430 9498467 8 80 1.5 2.0 1.8 2.9 117 chr2L 9498350 intron CG33298 + chr2L 9498408 intron CG33298 + chr2L 9498467 intron CG33298 + chr2L_8_9495001 chr2L_9495001 RAL-227 142 chr2L 9618159 9618178 chr2L 9618683 9618691 5 522 1.0 2.5 1.8 1.8 532 chr2L 9618159 intron GlcAT-S + chr2L 9618425 intron GlcAT-S + chr2L 9618691 intron GlcAT-S + chr2L_5_9615001 chr2L_9615001 RAL-227 143 chr2L 9665610 9665640 chr2L 9665741 9665771 5 131 0.5 0.5 0.5 3.3 161 chr2L 9665610 intergenic not near genes chr2L 9665690 intergenic not near genes chr2L 9665771 intergenic not near genes chr2L_5_9665001 chr2L_9665001 RAL-227 144 chr2L 9677773 9677806 chr2L 9678406 9678439 5 633 1.0 1.5 1.2 2.3 666 chr2L 9677773 intergenic not near genes chr2L 9678106 intergenic not near genes chr2L 9678439 intergenic not near genes chr2L_5_9675001 chr2L_9675001 RAL-227 145 chr2L 9973727 9973750 chr2L 9980846 9980868 HMS-Beagle 7 7118 1.0 2.5 1.8 2.5 7141 chr2L 9973727 intergenic not near genes chr2L 9977298 intergenic not near genes chr2L 9980868 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-227 146 chr2L 9986352 9986382 chr2L 9986446 9986456 8 92 2.0 2.5 2.2 2.5 104 chr2L 9986352 intron bib + chr2L 9986404 intron bib + chr2L 9986456 intron bib + chr2L_8_9985001 chr2L_9985001 RAL-227 147 chr2L 9997594 9997610 chr2L 9997718 9997735 6 124 5.0 1.5 3.2 1.4 141 chr2L 9997594 intron,exon CG31875 -,SoYb - chr2L 9997664 intron,exon CG31875 -,SoYb - chr2L 9997735 intron,exon CG31875 -,SoYb - chr2L_6_9995001 chr2L_9995001 RAL-227 148 chr2L 10130152 10130165 chr2L 10130233 10130246 4 81 2.0 0.0 1.0 2.0 94 chr2L 10130152 intron CG44153 - chr2L 10130199 intron CG44153 - chr2L 10130246 intron CG44153 - chr2L_4_10130001 chr2L_10130001 RAL-227 149 chr2L 10156327 10156354 chr2L 10163790 10163824 blood 9 7468 1.0 1.5 1.2 4.1 7497 chr2L 10156327 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-227 150 chr2L 10177898 10177930 chr2L 10177978 10178010 5 80 1.5 0.0 0.8 2.8 112 chr2L 10177898 intron CG44153 - chr2L 10177954 intron CG44153 - chr2L 10178010 intron CG44153 - chr2L_5_10175001 chr2L_10175001 RAL-227 151 chr2L 10209849 10209859 chr2L 10209926 10209936 4 77 2.0 0.0 1.0 2.0 87 chr2L 10209849 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209892 3` UTR CG5727 - chr2L 10209936 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-227 152 chr2L 10278017 10278042 chr2L 10278096 10278122 4 80 1.0 2.5 1.8 1.4 105 chr2L 10278017 intron Utx - chr2L 10278070 intron Utx - chr2L 10278122 intron Utx - chr2L_4_10275001 chr2L_10275001 RAL-227 153 chr2L 10474386 10474403 chr2L 10474467 10474484 5 81 4.0 0.5 2.2 1.6 98 chr2L 10474386 intergenic RluA-1 - chr2L 10474435 intergenic RluA-1 - chr2L 10474484 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-227 154 chr2L 10592845 10592872 chr2L 10600507 10600534 opus 5 7662 1.0 1.5 1.2 2.3 7689 chr2L 10592845 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600534 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-227 155 chr2L 10640638 10640669 chr2L 10640727 10640758 13 89 2.0 1.0 1.5 5.2 120 chr2L 10640638 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640758 exon CG31872 + chr2L_13_10640001 chr2L_10640001 RAL-227 156 chr2L 10685599 10685620 chr2L 10685680 10685682 5 78 1.0 1.0 1.0 2.5 83 chr2L 10685599 intergenic not near genes chr2L 10685640 intergenic CG7296 - chr2L 10685682 intergenic CG7296 - chr2L_5_10685001 chr2L_10685001 RAL-227 157 chr2L 10721289 10721311 chr2L 10721368 10721389 5 76 2.5 1.5 2.0 1.7 100 chr2L 10721289 intergenic not near genes chr2L 10721339 intergenic not near genes chr2L 10721389 intergenic not near genes chr2L_5_10720001 chr2L_10720001 RAL-227 158 chr2L 10862855 10862876 chr2L 10864468 10864490 Rt1c 8 1613 2.5 6.5 4.5 1.5 1635 chr2L 10862855 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-227 159 chr2L 10916527 10916552 chr2L 10916655 10916680 12 126 2.0 1.5 1.8 4.3 153 chr2L 10916527 intergenic dpr2 - chr2L 10916604 intergenic dpr2 - chr2L 10916680 intergenic dpr2 - chr2L_12_10915001 chr2L_10915001 RAL-227 160 chr2L 10919797 10919828 chr2L 10919886 10919917 8 87 2.0 1.5 1.8 2.9 120 chr2L 10919797 intron dpr2 - chr2L 10919857 intron dpr2 - chr2L 10919917 intron dpr2 - chr2L_8_10915001 chr2L_10915001 RAL-227 161 chr2L 10946959 10946977 chr2L 10956172 10956190 roo 4 9213 1.5 6.0 3.8 0.8 9231 chr2L 10946959 intron dpr2 - chr2L 10951574 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-227 162 chr2L 11224056 11224084 chr2L 11224167 11224194 8 110 1.5 0.5 1.0 4.0 138 chr2L 11224056 intron ab + chr2L 11224125 intron ab + chr2L 11224194 intron ab + chr2L_8_11220001 chr2L_11220001 RAL-227 163 chr2L 11292395 11292406 chr2L 11292477 11292488 5 82 0.5 3.0 1.8 1.8 93 chr2L 11292395 intergenic not near genes chr2L 11292442 intergenic not near genes chr2L 11292488 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-227 164 chr2L 11303059 11303089 chr2L 11303140 11303170 8 81 3.0 1.0 2.0 2.7 111 chr2L 11303059 intergenic not near genes chr2L 11303114 intergenic not near genes chr2L 11303170 intergenic not near genes chr2L_8_11300001 chr2L_11300001 RAL-227 165 chr2L 11335702 11335731 chr2L 11335780 11335809 10 78 1.0 1.0 1.0 5.0 107 chr2L 11335702 intergenic not near genes chr2L 11335756 intergenic not near genes chr2L 11335809 intergenic not near genes chr2L_10_11335001 chr2L_11335001 RAL-227 166 chr2L 11380623 11380634 chr2L 11380699 11380711 4 77 1.5 1.0 1.2 1.8 88 chr2L 11380623 intergenic not near genes chr2L 11380667 intergenic not near genes chr2L 11380711 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-227 167 chr2L 11418654 11418688 chr2L 11418733 11418767 9 79 1.5 1.5 1.5 3.6 113 chr2L 11418654 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_9_11415001 chr2L_11415001 RAL-227 168 chr2L 11458947 11458969 chr2L 11459063 11459085 5 116 3.5 1.5 2.5 1.4 138 chr2L 11458947 intergenic not near genes chr2L 11459016 intergenic not near genes chr2L 11459085 intergenic not near genes chr2L_5_11455001 chr2L_11455001 RAL-227 169 chr2L 11496639 11496654 chr2L 11496717 11496732 4 78 0.5 1.5 1.0 2.0 93 chr2L 11496639 intergenic CG6488 - chr2L 11496686 intergenic CG6488 - chr2L 11496732 intergenic CG6488 - chr2L_4_11495001 chr2L_11495001 RAL-227 170 chr2L 11537124 11537136 chr2L 11537388 11537400 4 264 2.0 1.5 1.8 1.4 276 chr2L 11537124 intergenic CG43438 + chr2L 11537262 intergenic CG43438 + chr2L 11537400 intergenic not near genes chr2L_4_11535001 chr2L_11535001 RAL-227 171 chr2L 11540585 11540616 chr2L 11547987 11548017 Tabor 5 7402 2.0 2.0 2.0 1.7 7432 chr2L 11540585 intergenic not near genes chr2L 11544301 intergenic not near genes chr2L 11548017 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-227 172 chr2L 11563634 11563664 chr2L 11568838 11568868 copia 4 5204 3.0 2.0 2.5 1.1 5234 chr2L 11563634 intergenic not near genes chr2L 11566251 intergenic not near genes chr2L 11568868 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-227 173 chr2L 11610541 11610554 chr2L 11610620 11610633 6 79 4.5 2.0 3.2 1.4 92 chr2L 11610541 intron,3` UTR kek2 +,spag4 - chr2L 11610587 intron,3` UTR kek2 +,spag4 - chr2L 11610633 intron,3` UTR kek2 +,spag4 - chr2L_6_11610001 chr2L_11610001 RAL-227 174 chr2L 11657975 11657997 chr2L 11658059 11658079 7 84 2.0 1.5 1.8 2.5 104 chr2L 11657975 3` UTR CG43167 + chr2L 11658027 intergenic CG43167 + chr2L 11658079 intergenic CG43167 + chr2L_7_11655001 chr2L_11655001 RAL-227 175 chr2L 11672138 11672162 chr2L 11672245 11672269 6 107 1.0 0.5 0.8 3.3 131 chr2L 11672138 intergenic not near genes chr2L 11672204 intergenic not near genes chr2L 11672269 intergenic not near genes chr2L_6_11670001 chr2L_11670001 RAL-227 176 chr2L 11713518 11713534 chr2L 11720986 11721002 blood 11 7467 0.5 3.5 2.0 3.7 7484 chr2L 11713518 intergenic not near genes chr2L 11717260 intergenic not near genes chr2L 11721002 intergenic CR44143 + chr2L_11_11715001 chr2L_11715001 RAL-227 177 chr2L 11770598 11770629 chr2L 11770685 11770716 9 87 2.0 3.5 2.8 2.4 118 chr2L 11770598 intergenic not near genes chr2L 11770657 intergenic not near genes chr2L 11770716 intergenic not near genes chr2L_9_11770001 chr2L_11770001 RAL-227 178 chr2L 11819733 11819752 chr2L 11819974 11819993 5 241 2.5 1.0 1.8 1.8 260 chr2L 11819733 intron Pde1c - chr2L 11819863 intron Pde1c - chr2L 11819993 intron Pde1c - chr2L_5_11815001 chr2L_11815001 RAL-227 179 chr2L 12031399 12031413 chr2L 12031479 12031494 4 81 2.0 3.0 2.5 1.1 95 chr2L 12031399 intron dmGlut + chr2L 12031446 intron dmGlut + chr2L 12031494 intron dmGlut + chr2L_4_12030001 chr2L_12030001 RAL-227 180 chr2L 12123256 12123269 chr2L 12123341 12123354 8 85 2.0 3.5 2.8 2.1 98 chr2L 12123256 intron CG17211 + chr2L 12123305 intron CG17211 + chr2L 12123354 intron CG17211 + chr2L_8_12120001 chr2L_12120001 RAL-227 181 chr2L 12244900 12244917 chr2L 12244986 12245005 8 88 3.5 0.0 1.8 2.9 105 chr2L 12244900 intron aret + chr2L 12244952 intron aret + chr2L 12245005 intron aret + chr2L_8_12240001 chr2L_12240001 RAL-227 182 chr2L 12254031 12254050 chr2L 12254123 12254142 7 92 1.5 0.0 0.8 3.9 111 chr2L 12254031 intron aret + chr2L 12254086 intron aret + chr2L 12254142 intron aret + chr2L_7_12250001 chr2L_12250001 RAL-227 183 chr2L 12305410 12305435 chr2L 12305498 12305523 6 88 2.5 3.5 3.0 1.5 113 chr2L 12305410 intron aret + chr2L 12305466 intron aret + chr2L 12305523 intron aret + chr2L_6_12305001 chr2L_12305001 RAL-227 184 chr2L 12445277 12445305 chr2L 12445357 12445363 5 74 0.5 2.0 1.2 2.3 86 chr2L 12445277 intron Oatp33Ea - chr2L 12445320 intron Oatp33Ea - chr2L 12445363 intron Oatp33Ea - chr2L_5_12445001 chr2L_12445001 RAL-227 185 chr2L 12455941 12455969 chr2L 12456021 12456045 7 79 1.5 2.5 2.0 2.3 104 chr2L 12455941 3` UTR bun - chr2L 12455993 3` UTR bun - chr2L 12456045 3` UTR bun - chr2L_7_12455001 chr2L_12455001 RAL-227 186 chr2L 12463898 12463913 chr2L 12463984 12464005 4 90 1.5 3.0 2.2 1.2 107 chr2L 12463898 intron bun - chr2L 12463952 intron bun - chr2L 12464005 intron bun - chr2L_4_12460001 chr2L_12460001 RAL-227 187 chr2L 12529232 12529260 chr2L 12529384 12529412 11 152 0.5 1.5 1.0 5.5 180 chr2L 12529232 intron bun - chr2L 12529322 intron bun - chr2L 12529412 intron bun - chr2L_11_12525001 chr2L_12525001 RAL-227 188 chr2L 12558328 12558349 chr2L 12565457 12565478 HMS-Beagle 5 7129 1.5 3.5 2.5 1.4 7150 chr2L 12558328 intergenic not near genes chr2L 12561903 intergenic not near genes chr2L 12565478 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-227 189 chr2L 12728924 12728934 chr2L 12729162 12729174 pogo 4 238 3.0 1.0 2.0 1.3 250 chr2L 12728924 intron MRP + chr2L 12729049 intron MRP + chr2L 12729174 intron MRP + chr2L_4_12725001 chr2L_12725001 RAL-227 190 chr2L 12739176 12739195 chr2L 12743957 12743976 Doc 5 4781 3.5 3.0 3.2 1.2 4800 chr2L 12739176 exon MRP + chr2L 12741576 intron MRP + chr2L 12743976 intron MRP + chr2L_5_12740001 chr2L_12740001 RAL-227 191 chr2L 12751310 12751337 chr2L 12751393 12751420 11 83 2.0 2.5 2.2 3.4 110 chr2L 12751310 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_11_12750001 chr2L_12750001 RAL-227 192 chr2L 12763163 12763190 chr2L 12763254 12763281 5 90 4.5 1.0 2.8 1.3 118 chr2L 12763163 intergenic not near genes chr2L 12763222 intergenic not near genes chr2L 12763281 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-227 193 chr2L 12763866 12763873 chr2L 12764066 12764073 BS 5 200 0.0 1.5 0.8 2.8 207 chr2L 12763866 intergenic not near genes chr2L 12763970 intergenic not near genes chr2L 12764073 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-227 194 chr2L 12791605 12791636 chr2L 12795280 12795311 F-element 5 3674 1.0 2.0 1.5 2.0 3706 chr2L 12791605 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795311 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-227 195 chr2L 12855302 12855328 chr2L 12855387 12855413 5 85 0.0 1.0 0.5 3.3 111 chr2L 12855302 intergenic not near genes chr2L 12855358 intergenic not near genes chr2L 12855413 intergenic not near genes chr2L_5_12855001 chr2L_12855001 RAL-227 196 chr2L 12861696 12861731 chr2L 12863163 12863197 hobo 13 1463 0.0 0.5 0.2 10.8 1501 chr2L 12861696 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863197 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-227 197 chr2L 12870273 12870305 chr2L 12870575 12870607 8 300 1.5 1.5 1.5 3.2 334 chr2L 12870273 intergenic not near genes chr2L 12870440 intergenic not near genes chr2L 12870607 intergenic not near genes chr2L_8_12870001 chr2L_12870001 RAL-227 198 chr2L 12933853 12933880 chr2L 12941318 12941342 blood 8 7464 1.5 0.0 0.8 4.4 7489 chr2L 12933853 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941342 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-227 199 chr2L 13036250 13036275 chr2L 13036492 13036517 X-element 6 242 2.0 3.0 2.5 1.7 267 chr2L 13036250 intron CG9932 - chr2L 13036384 intron CG9932 - chr2L 13036517 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-227 200 chr2L 13241959 13241972 chr2L 13244343 13244356 BS 4 2384 1.5 1.0 1.2 1.8 2397 chr2L 13241959 5` UTR CR45330 + chr2L 13243158 intron CR45330 + chr2L 13244356 5` UTR CR45330 + chr2L_4_13240001 chr2L_13240001 RAL-227 201 chr2L 13266389 13266411 chr2L 13266477 13266499 9 88 1.0 4.0 2.5 2.6 110 chr2L 13266389 intron CG44085 + chr2L 13266444 intron CG44085 + chr2L 13266499 intron CG44085 + chr2L_9_13265001 chr2L_13265001 RAL-227 202 chr2L 13449465 13449496 chr2L 13456898 13456932 Quasimodo 4 7435 0.5 1.5 1.0 2.0 7467 chr2L 13449465 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456932 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-227 203 chr2L 13573447 13573475 chr2L 13573538 13573565 8 90 3.5 3.5 3.5 1.8 118 chr2L 13573447 intron kuz + chr2L 13573506 intron kuz + chr2L 13573565 intron kuz + chr2L_8_13570001 chr2L_13570001 RAL-227 204 chr2L 13761804 13761835 chr2L 13762915 13762942 Doc 6 1108 3.5 2.0 2.8 1.6 1138 chr2L 13761804 intron TM9SF4 + chr2L 13762373 intron TM9SF4 + chr2L 13762942 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-227 205 chr2L 13851736 13851745 chr2L 13851841 13851849 4 104 3.0 1.5 2.2 1.2 113 chr2L 13851736 intron CenG1A + chr2L 13851792 intron CenG1A + chr2L 13851849 intron CenG1A + chr2L_4_13850001 chr2L_13850001 RAL-227 206 chr2L 13853090 13853115 chr2L 13862240 13862265 roo 8 9149 1.0 3.5 2.2 2.5 9175 chr2L 13853090 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862265 intron CenG1A + chr2L_8_13855001 chr2L_13855001 RAL-227 207 chr2L 13913591 13913603 chr2L 13913703 13913715 4 112 3.5 3.5 3.5 0.9 124 chr2L 13913591 intergenic not near genes chr2L 13913653 intergenic not near genes chr2L 13913715 intergenic not near genes chr2L_4_13910001 chr2L_13910001 RAL-227 208 chr2L 13988287 13988389 chr2L 13988374 13988470 6 83 0.0 0.0 0.0 6.0 183 chr2L 13988287 intron rk - chr2L 13988378 intron rk - chr2L 13988470 intron rk - chr2L_6_13985001 chr2L_13985001 RAL-227 209 chr2L 14009735 14009760 chr2L 14009812 14009820 6 74 3.0 4.0 3.5 1.3 85 chr2L 14009735 intergenic not near genes chr2L 14009778 intergenic not near genes chr2L 14009820 intergenic not near genes chr2L_6_14005001 chr2L_14005001 RAL-227 210 chr2L 14222309 14222325 chr2L 14222396 14222412 5 87 2.0 1.0 1.5 2.0 103 chr2L 14222309 intron Dyrk2 - chr2L 14222360 intron Dyrk2 - chr2L 14222412 intron Dyrk2 - chr2L_5_14220001 chr2L_14220001 RAL-227 211 chr2L 14525569 14525598 chr2L 14525651 14525680 4 82 1.0 1.5 1.2 1.8 111 chr2L 14525569 exon CG33648 + chr2L 14525624 exon CG33648 + chr2L 14525680 intergenic CG33648 + chr2L_4_14525001 chr2L_14525001 RAL-227 212 chr2L 14549161 14549176 chr2L 14549237 14549252 5 76 1.0 3.0 2.0 1.7 91 chr2L 14549161 intergenic CG4218 - chr2L 14549206 intergenic CG4218 - chr2L 14549252 intergenic CG4218 - chr2L_5_14545001 chr2L_14545001 RAL-227 213 chr2L 14588382 14588415 chr2L 14588536 14588569 8 154 1.5 1.5 1.5 3.2 187 chr2L 14588382 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588569 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-227 214 chr2L 14601975 14602000 chr2L 14602059 14602084 4 84 1.5 0.5 1.0 2.0 109 chr2L 14601975 exon osp - chr2L 14602030 intron osp - chr2L 14602084 intron osp - chr2L_4_14600001 chr2L_14600001 RAL-227 215 chr2L 14707217 14707238 chr2L 14707336 14707357 7 118 1.0 1.0 1.0 3.5 140 chr2L 14707217 intergenic not near genes chr2L 14707287 intergenic not near genes chr2L 14707357 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-227 216 chr2L 14715534 14715564 chr2L 14715625 14715655 6 91 1.5 2.0 1.8 2.1 121 chr2L 14715534 intergenic not near genes chr2L 14715594 intergenic not near genes chr2L 14715655 intergenic not near genes chr2L_6_14715001 chr2L_14715001 RAL-227 217 chr2L 14724493 14724518 chr2L 14724572 14724597 4 79 1.5 1.0 1.2 1.8 104 chr2L 14724493 intergenic CG42685 - chr2L 14724545 intergenic CG42685 - chr2L 14724597 intergenic CG42685 - chr2L_4_14720001 chr2L_14720001 RAL-227 218 chr2L 14803886 14803900 chr2L 14809089 14809103 copia 5 5203 2.5 3.5 3.0 1.2 5217 chr2L 14803886 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809103 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-227 219 chr2L 14889952 14889977 chr2L 14890377 14890400 jockey 5 425 3.0 1.0 2.0 1.7 448 chr2L 14889952 intergenic not near genes chr2L 14890176 intergenic not near genes chr2L 14890400 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-227 220 chr2L 14950454 14950474 chr2L 14950929 14950930 7 472 2.5 3.0 2.8 1.8 476 chr2L 14950454 intron CG42313 - chr2L 14950692 intron CG42313 - chr2L 14950930 intron CG42313 - chr2L_7_14950001 chr2L_14950001 RAL-227 221 chr2L 14984384 14984405 chr2L 14991986 14992003 opus 4 7596 2.0 2.5 2.2 1.2 7619 chr2L 14984384 intron mol - chr2L 14988194 intron mol - chr2L 14992003 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-227 222 chr2L 15003545 15003566 chr2L 15003628 15003650 4 84 1.5 1.5 1.5 1.6 105 chr2L 15003545 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003650 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-227 223 chr2L 15044709 15044739 chr2L 15044785 15044815 4 75 2.0 1.0 1.5 1.6 106 chr2L 15044709 intergenic ck - chr2L 15044762 intergenic ck - chr2L 15044815 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-227 224 chr2L 15053124 15053135 chr2L 15053201 15053212 5 77 0.0 2.5 1.2 2.3 88 chr2L 15053124 intron ck - chr2L 15053168 intron ck - chr2L 15053212 intron ck - chr2L_5_15050001 chr2L_15050001 RAL-227 225 chr2L 15057847 15057870 chr2L 15061365 15061388 5 3516 14.0 7.0 10.5 0.4 3541 chr2L 15057847 5` UTR ck - chr2L 15059618 exon TfIIS - chr2L 15061388 intergenic vas + chr2L_5_15055001 chr2L_15055001 RAL-227 226 chr2L 15127768 15127800 chr2L 15127854 15127886 4 86 2.0 2.5 2.2 1.2 118 chr2L 15127768 intergenic not near genes chr2L 15127827 intergenic not near genes chr2L 15127886 intergenic not near genes chr2L_4_15125001 chr2L_15125001 RAL-227 227 chr2L 15252985 15253001 chr2L 15253064 15253079 8 78 2.5 1.0 1.8 2.9 94 chr2L 15252985 intron dao + chr2L 15253032 intron dao + chr2L 15253079 intron dao + chr2L_8_15250001 chr2L_15250001 RAL-227 228 chr2L 15343538 15343563 chr2L 15343623 15343648 7 85 0.5 0.0 0.2 5.8 110 chr2L 15343538 intergenic not near genes chr2L 15343593 intergenic not near genes chr2L 15343648 intergenic not near genes chr2L_7_15340001 chr2L_15340001 RAL-227 229 chr2L 15375829 15375844 chr2L 15375938 15375956 4 111 1.0 2.0 1.5 1.6 127 chr2L 15375829 intergenic not near genes chr2L 15375892 intergenic not near genes chr2L 15375956 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-227 230 chr2L 15415477 15415513 chr2L 15415568 15415604 10 91 2.5 1.0 1.8 3.6 127 chr2L 15415477 intergenic not near genes chr2L 15415540 intergenic not near genes chr2L 15415604 intergenic not near genes chr2L_10_15415001 chr2L_15415001 RAL-227 231 chr2L 15482582 15482604 chr2L 15482718 15482739 9 135 2.0 2.5 2.2 2.8 157 chr2L 15482582 intergenic not near genes chr2L 15482660 intergenic not near genes chr2L 15482739 intergenic not near genes chr2L_9_15480001 chr2L_15480001 RAL-227 232 chr2L 15586408 15586439 chr2L 15593460 15593491 297 5 7052 1.5 2.0 1.8 1.8 7083 chr2L 15586408 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-227 233 chr2L 15601333 15601353 chr2L 15601410 15601430 5 77 5.0 1.0 3.0 1.2 97 chr2L 15601333 intergenic not near genes chr2L 15601382 intergenic not near genes chr2L 15601430 intergenic not near genes chr2L_5_15600001 chr2L_15600001 RAL-227 234 chr2L 15881917 15881935 chr2L 15882261 15882279 4 344 6.5 5.0 5.8 0.6 362 chr2L 15881917 intergenic not near genes chr2L 15882098 intergenic not near genes chr2L 15882279 intergenic not near genes chr2L_4_15880001 chr2L_15880001 RAL-227 235 chr2L 15915652 15915678 chr2L 15915730 15915737 7 75 4.0 3.0 3.5 1.6 85 chr2L 15915652 intron beat-Ib - chr2L 15915694 intron beat-Ib - chr2L 15915737 intron beat-Ib - chr2L_7_15915001 chr2L_15915001 RAL-227 236 chr2L 15919053 15919080 chr2L 15919147 15919170 4 93 0.5 2.0 1.2 1.8 117 chr2L 15919053 intron beat-Ib - chr2L 15919112 intron beat-Ib - chr2L 15919170 intron beat-Ib - chr2L_4_15915001 chr2L_15915001 RAL-227 237 chr2L 15956024 15956051 chr2L 15957490 15957518 hobo 10 1467 3.5 3.0 3.2 2.4 1494 chr2L 15956024 intron beat-Ib - chr2L 15956771 intron beat-Ib - chr2L 15957518 intron beat-Ib - chr2L_10_15955001 chr2L_15955001 RAL-227 238 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 12.0 7.5 9.8 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-227 239 chr2L 16141148 16141191 chr2L 16146369 16146398 copia 4 5210 0.0 2.5 1.2 1.8 5250 chr2L 16141148 intergenic not near genes chr2L 16143773 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-227 240 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405058 6.5 9.5 8.0 0.7 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-227 241 chr2L 16694145 16694164 chr2L 16694230 16694241 4 84 1.5 4.0 2.8 1.1 96 chr2L 16694145 intron grp + chr2L 16694193 intron grp + chr2L 16694241 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-227 242 chr2L 16695258 16695292 chr2L 16695342 16695376 6 84 0.5 0.5 0.5 4.0 118 chr2L 16695258 intron grp + chr2L 16695317 intron grp + chr2L 16695376 intron grp + chr2L_6_16695001 chr2L_16695001 RAL-227 243 chr2L 16864375 16864397 chr2L 16864473 16864496 6 98 3.0 2.0 2.5 1.7 121 chr2L 16864375 intergenic not near genes chr2L 16864436 intergenic not near genes chr2L 16864496 intergenic not near genes chr2L_6_16860001 chr2L_16860001 RAL-227 244 chr2L 16927274 16927289 chr2L 16927355 16927370 6 81 1.0 2.0 1.5 2.4 96 chr2L 16927274 intergenic not near genes chr2L 16927322 intergenic not near genes chr2L 16927370 intergenic not near genes chr2L_6_16925001 chr2L_16925001 RAL-227 245 chr2L 16940073 16940094 chr2L 16940163 16940184 7 87 2.5 3.5 3.0 1.8 111 chr2L 16940073 intergenic not near genes chr2L 16940128 intergenic not near genes chr2L 16940184 intergenic not near genes chr2L_7_16940001 chr2L_16940001 RAL-227 246 chr2L 16940099 16940108 chr2L 16940162 16940181 4 79 1.0 3.0 2.0 1.3 82 chr2L 16940099 intergenic not near genes chr2L 16940140 intergenic not near genes chr2L 16940181 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-227 247 chr2L 16958114 16958136 chr2L 16962902 16962924 Doc 7 4788 1.5 2.0 1.8 2.5 4810 chr2L 16958114 intergenic not near genes chr2L 16960519 intergenic not near genes chr2L 16962924 intergenic not near genes chr2L_7_16960001 chr2L_16960001 RAL-227 248 chr2L 17005416 17005435 chr2L 17005510 17005529 4 92 1.0 2.5 1.8 1.4 113 chr2L 17005416 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005529 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-227 249 chr2L 17167573 17167596 chr2L 17167814 17167837 pogo 5 241 1.0 3.0 2.0 1.7 264 chr2L 17167573 intron,intron CG34106 +,beat-IIIa + chr2L 17167705 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-227 250 chr2L 17240572 17240591 chr2L 17240659 17240677 4 87 1.0 2.0 1.5 1.6 105 chr2L 17240572 intron beat-IIIc - chr2L 17240624 intron beat-IIIc - chr2L 17240677 intron beat-IIIc - chr2L_4_17240001 chr2L_17240001 RAL-227 251 chr2L 17273198 17273219 chr2L 17277978 17278002 F-element 4 4782 2.0 2.0 2.0 1.3 4804 chr2L 17273198 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278002 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-227 252 chr2L 17432021 17432047 chr2L 17432128 17432154 1360 5 107 0.0 2.0 1.0 2.5 133 chr2L 17432021 intron Dif - chr2L 17432088 intron Dif - chr2L 17432154 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-227 253 chr2L 17675941 17675966 chr2L 17676020 17676045 5 79 0.0 0.5 0.2 4.2 104 chr2L 17675941 intron CadN - chr2L 17675993 intron CadN - chr2L 17676045 intron CadN - chr2L_5_17675001 chr2L_17675001 RAL-227 254 chr2L 17703651 17703685 chr2L 17703737 17703776 8 89 1.0 0.5 0.8 4.4 125 chr2L 17703651 intron CadN - chr2L 17703714 intron CadN - chr2L 17703776 intron CadN - chr2L_8_17700001 chr2L_17700001 RAL-227 255 chr2L 17751053 17751073 chr2L 17751197 17751217 6 142 2.5 4.0 3.2 1.4 164 chr2L 17751053 intron CadN - chr2L 17751135 intron CadN - chr2L 17751217 intron CadN - chr2L_6_17750001 chr2L_17750001 RAL-227 256 chr2L 17951957 17951975 chr2L 17953424 17953442 hobo 5 1467 1.0 3.0 2.0 1.7 1485 chr2L 17951957 intergenic CR44398 -,CR44397 - chr2L 17952700 intergenic not near genes chr2L 17953442 intergenic not near genes chr2L_5_17950001 chr2L_17950001 RAL-227 257 chr2L 18051878 18051908 chr2L 18061025 18061055 roo 4 9145 4.0 1.5 2.8 1.1 9177 chr2L 18051878 intron rdo + chr2L 18056466 intron rdo + chr2L 18061055 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-227 258 chr2L 18079816 18079848 chr2L 18079902 18079934 6 86 1.5 3.0 2.2 1.9 118 chr2L 18079816 intron Arr1 + chr2L 18079875 intron Arr1 + chr2L 18079934 intron Arr1 + chr2L_6_18075001 chr2L_18075001 RAL-227 259 chr2L 18111248 18111264 chr2L 18111339 18111354 7 91 0.5 2.0 1.2 3.2 106 chr2L 18111248 intergenic not near genes chr2L 18111301 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_7_18110001 chr2L_18110001 RAL-227 260 chr2L 18231136 18231168 chr2L 18231221 18231247 9 84 3.0 2.5 2.8 2.4 111 chr2L 18231136 intron CG42750 - chr2L 18231192 intron CG42750 - chr2L 18231247 intron CG42750 - chr2L_9_18230001 chr2L_18230001 RAL-227 261 chr2L 18274042 18274075 chr2L 18274128 18274161 11 86 1.5 2.5 2.0 3.7 119 chr2L 18274042 intron CG42750 - chr2L 18274102 intron CG42750 - chr2L 18274161 intron CG42750 - chr2L_11_18270001 chr2L_18270001 RAL-227 262 chr2L 18291529 18291552 chr2L 18291627 18291650 6 98 0.5 1.0 0.8 3.3 121 chr2L 18291529 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291590 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291650 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_6_18290001 chr2L_18290001 RAL-227 263 chr2L 18464787 18464806 chr2L 18464870 18464889 5 83 5.0 2.0 3.5 1.1 102 chr2L 18464787 intron let-7-C + chr2L 18464838 intron let-7-C + chr2L 18464889 intron let-7-C + chr2L_5_18460001 chr2L_18460001 RAL-227 264 chr2L 18876873 18876884 chr2L 18876946 18876962 4 77 2.5 3.0 2.8 1.1 89 chr2L 18876873 intron tup - chr2L 18876918 intron tup - chr2L 18876962 intron tup - chr2L_4_18875001 chr2L_18875001 RAL-227 265 chr2L 18902628 18902657 chr2L 18902909 18902938 8 281 1.5 2.0 1.8 2.9 310 chr2L 18902628 intergenic not near genes chr2L 18902783 intergenic not near genes chr2L 18902938 intergenic not near genes chr2L_8_18900001 chr2L_18900001 RAL-227 266 chr2L 18925235 18925258 chr2L 18925330 18925353 7 92 1.5 3.5 2.5 2.0 118 chr2L 18925235 intron ssp3 - chr2L 18925294 intron ssp3 - chr2L 18925353 intron ssp3 - chr2L_7_18925001 chr2L_18925001 RAL-227 267 chr2L 19121040 19121070 chr2L 19121118 19121145 5 75 3.5 0.5 2.0 1.7 105 chr2L 19121040 intergenic l(2)37Cc - chr2L 19121092 intergenic l(2)37Cc - chr2L 19121145 intergenic l(2)37Cc - chr2L_5_19120001 chr2L_19120001 RAL-227 268 chr2L 19189980 19190005 chr2L 19190134 19190158 4 154 1.5 4.0 2.8 1.1 178 chr2L 19189980 intergenic pigeon +,drl + chr2L 19190069 intergenic pigeon +,drl + chr2L 19190158 intergenic drl +,pigeon + chr2L_4_19190001 chr2L_19190001 RAL-227 269 chr2L 19199668 19199695 chr2L 19199744 19199772 9 74 3.0 3.5 3.2 2.1 104 chr2L 19199668 intron drl + chr2L 19199720 intron drl + chr2L 19199772 intron drl + chr2L_9_19195001 chr2L_19195001 RAL-227 270 chr2L 19209614 19209634 chr2L 19209699 19209719 5 85 2.5 2.0 2.2 1.6 105 chr2L 19209614 intergenic not near genes chr2L 19209666 intergenic not near genes chr2L 19209719 intergenic not near genes chr2L_5_19205001 chr2L_19205001 RAL-227 271 chr2L 19305622 19305628 chr2L 19305728 19305734 4 106 2.0 1.5 1.8 1.4 112 chr2L 19305622 intergenic not near genes chr2L 19305678 intergenic not near genes chr2L 19305734 intergenic not near genes chr2L_4_19305001 chr2L_19305001 RAL-227 272 chr2L 19309625 19309645 chr2L 19309705 19309725 7 80 3.0 2.5 2.8 1.8 100 chr2L 19309625 intergenic not near genes chr2L 19309675 intergenic not near genes chr2L 19309725 intergenic not near genes chr2L_7_19305001 chr2L_19305001 RAL-227 273 chr2L 19316204 19316226 chr2L 19316280 19316299 5 76 2.0 0.0 1.0 2.5 95 chr2L 19316204 intergenic not near genes chr2L 19316252 intergenic not near genes chr2L 19316299 intergenic not near genes chr2L_5_19315001 chr2L_19315001 RAL-227 274 chr2L 19345014 19345043 chr2L 19357222 19357252 blood 8 12208 4.5 1.0 2.8 2.1 12238 chr2L 19345014 intron dnt - chr2L 19351133 intron dnt - chr2L 19357252 intron dnt - chr2L_8_19350001 chr2L_19350001 RAL-227 275 chr2L 19357552 19357567 chr2L 19357639 19357657 6 89 3.0 4.0 3.5 1.3 105 chr2L 19357552 intron dnt - chr2L 19357604 intron dnt - chr2L 19357657 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-227 276 chr2L 19360588 19360605 chr2L 19360724 19360742 4 136 5.0 3.5 4.2 0.8 154 chr2L 19360588 intron dnt - chr2L 19360665 intron dnt - chr2L 19360742 intron dnt - chr2L_4_19360001 chr2L_19360001 RAL-227 277 chr2L 19380507 19380529 chr2L 19380586 19380609 6 80 4.5 1.5 3.0 1.5 102 chr2L 19380507 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380609 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-227 278 chr2L 19383996 19384015 chr2L 19384096 19384116 6 99 2.0 2.0 2.0 2.0 120 chr2L 19383996 exon fon - chr2L 19384056 exon fon - chr2L 19384116 exon fon - chr2L_6_19380001 chr2L_19380001 RAL-227 279 chr2L 19543132 19543159 chr2L 19543216 19543243 7 84 1.5 3.0 2.2 2.2 111 chr2L 19543132 intron ref(2)P + chr2L 19543188 intron ref(2)P + chr2L 19543243 intron ref(2)P + chr2L_7_19540001 chr2L_19540001 RAL-227 280 chr2L 19559183 19559212 chr2L 19559269 19559300 12 88 2.5 3.5 3.0 3.0 117 chr2L 19559183 exon Tep5 + chr2L 19559242 exon Tep5 + chr2L 19559300 exon Tep5 + chr2L_12_19555001 chr2L_19555001 RAL-227 281 chr2L 19562542 19562562 chr2L 19562618 19562640 8 79 3.0 4.0 3.5 1.8 98 chr2L 19562542 intron Tep5 + chr2L 19562591 intron Tep5 + chr2L 19562640 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-227 282 chr2L 19620096 19620132 chr2L 19621085 19621119 jockey 12 988 0.5 2.5 1.5 4.8 1023 chr2L 19620096 intron Lar + chr2L 19620608 intron Lar + chr2L 19621119 intron Lar + chr2L_12_19620001 chr2L_19620001 RAL-227 283 chr2L 19652569 19652595 chr2L 19674005 19674031 opus 6 21436 0.5 1.0 0.8 3.3 21462 chr2L 19652569 intron Lar + chr2L 19663300 intron Lar + chr2L 19674031 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-227 284 chr2L 19703537 19703567 chr2L 19712673 19712703 roo 8 9136 3.5 3.0 3.2 1.9 9166 chr2L 19703537 intron Lar + chr2L 19708120 intron Lar + chr2L 19712703 intron Lar + chr2L_8_19705001 chr2L_19705001 RAL-227 285 chr2L 19737369 19737389 chr2L 19740836 19740858 1360 8 3466 0.5 7.5 4.0 1.6 3489 chr2L 19737369 intergenic Nf-YB + chr2L 19739114 intergenic not near genes chr2L 19740858 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-227 286 chr2L 19837277 19837297 chr2L 19837357 19837377 10 80 2.0 1.0 1.5 4.0 100 chr2L 19837277 intron sick + chr2L 19837327 intron sick + chr2L 19837377 intron sick + chr2L_10_19835001 chr2L_19835001 RAL-227 287 chr2L 19911299 19911318 chr2L 19911378 19911406 11 85 1.0 1.0 1.0 5.5 107 chr2L 19911299 intron,3` UTR sick +,CR43097 - chr2L 19911352 intron,3` UTR sick +,CR43097 - chr2L 19911406 intron,3` UTR sick +,CR43097 - chr2L_11_19910001 chr2L_19910001 RAL-227 288 chr2L 19964845 19964866 chr2L 19964918 19964951 8 83 3.5 1.5 2.5 2.3 106 chr2L 19964845 exon CG10680 + chr2L 19964898 exon CG10680 + chr2L 19964951 exon CG10680 + chr2L_8_19960001 chr2L_19960001 RAL-227 289 chr2L 19980703 19980718 chr2L 19980772 19980799 6 79 2.0 1.0 1.5 2.4 96 chr2L 19980703 intron CG43861 - chr2L 19980751 intron CG43861 - chr2L 19980799 intron CG43861 - chr2L_6_19980001 chr2L_19980001 RAL-227 290 chr2L 20005873 20005885 chr2L 20010949 20010955 flea 5 5075 4.0 2.0 3.0 1.2 5082 chr2L 20005873 intron CG43861 - chr2L 20008414 intron CG43861 - chr2L 20010955 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-227 291 chr2L 20272115 20272145 chr2L 20282822 20282856 copia 5 10710 2.5 4.0 3.2 1.2 10741 chr2L 20272115 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282856 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-227 292 chr2L 20296506 20296540 chr2L 20296587 20296620 10 81 0.5 0.5 0.5 6.7 114 chr2L 20296506 intergenic CR43414 - chr2L 20296563 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-227 293 chr2L 20532049 20532052 chr2L 20532131 20532134 4 84 0.5 5.0 2.8 1.1 85 chr2L 20532049 intergenic CG44270 + chr2L 20532092 intergenic CG44270 + chr2L 20532134 intergenic CG44270 + chr2L_4_20530001 chr2L_20530001 RAL-227 294 chr2L 20576237 20576248 chr2L 20583706 20583708 blood 4 7467 4.5 4.5 4.5 0.7 7471 chr2L 20576237 intergenic not near genes chr2L 20579972 intergenic not near genes chr2L 20583708 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-227 295 chr2L 20611235 20611267 chr2L 20611322 20611350 5 87 0.0 1.0 0.5 3.3 115 chr2L 20611235 intron CR44909 - chr2L 20611292 intron CR44909 - chr2L 20611350 intron CR44909 - chr2L_5_20610001 chr2L_20610001 RAL-227 296 chr2L 20639510 20639532 chr2L 20639786 20639808 INE-1 7 276 1.0 3.0 2.0 2.3 298 chr2L 20639510 intergenic not near genes chr2L 20639659 intergenic CG31680 + chr2L 20639808 intergenic CG31680 + chr2L_7_20635001 chr2L_20635001 RAL-227 297 chr2L 20818510 20818521 chr2L 20818591 20818602 6 81 3.0 2.0 2.5 1.7 92 chr2L 20818510 exon CheB38a - chr2L 20818556 intergenic CheB38a - chr2L 20818602 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-227 298 chr2L 20835814 20835839 chr2L 20836531 20836555 Quasimodo 4 717 1.5 2.0 1.8 1.4 741 chr2L 20835814 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836555 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-227 299 chr2L 20976641 20976679 chr2L 20981456 20981494 X-element 8 4815 1.0 1.0 1.0 4.0 4853 chr2L 20976641 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981494 intron CG42238 - chr2L_8_20975001 chr2L_20975001 RAL-227 300 chr2L 21001098 21001131 chr2L 21001177 21001210 6 79 1.0 4.0 2.5 1.7 112 chr2L 21001098 intron CG42238 - chr2L 21001154 intron CG42238 - chr2L 21001210 intron CG42238 - chr2L_6_21000001 chr2L_21000001 RAL-227 301 chr2L 21020276 21020308 chr2L 21023953 21023985 NOF 9 3677 1.5 1.5 1.5 3.6 3709 chr2L 21020276 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-227 302 chr2L 21041146 21041165 chr2L 21049400 21049415 Tirant 5 8257 2.0 3.0 2.5 1.4 8269 chr2L 21041146 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049415 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-227 303 chr2L 21088922 21088948 chr2L 21089003 21089031 7 80 1.5 2.0 1.8 2.5 109 chr2L 21088922 intergenic ppk13 -,CG9259 + chr2L 21088976 intergenic ppk13 -,CG9259 + chr2L 21089031 intergenic ppk13 -,CG9259 + chr2L_7_21085001 chr2L_21085001 RAL-227 304 chr2L 21286604 21286631 chr2L 21286682 21286709 8 76 1.5 1.5 1.5 3.2 105 chr2L 21286604 exon Mio - chr2L 21286656 intron Mio - chr2L 21286709 intron Mio - chr2L_8_21285001 chr2L_21285001 RAL-227 305 chr2L 21347548 21347573 chr2L 21355020 21355045 blood 4 7472 1.0 2.5 1.8 1.4 7497 chr2L 21347548 intron Tsp39D + chr2L 21351296 intron Tsp39D + chr2L 21355045 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 RAL-227 306 chr2L 21597034 21597055 chr2L 21604778 21604799 roo 6 7744 2.0 0.0 1.0 3.0 7765 chr2L 21597034 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604799 intergenic not near genes chr2L_6_21600001 chr2L_21600001 RAL-227 307 chr2L 21691837 21691853 chr2L 21698307 21698323 Burdock 4 6470 1.0 0.0 0.5 2.7 6486 chr2L 21691837 intron CG31619 + chr2L 21695080 intron CG31619 + chr2L 21698323 intron CG31619 + chr2L_4_21695001 chr2L_21695001 RAL-227 308 chr2L 21771232 21771258 chr2L 21771339 21771365 8 107 1.5 3.5 2.5 2.3 133 chr2L 21771232 intron CG31612 - chr2L 21771298 intron CG31612 - chr2L 21771365 intron CG31612 - chr2L_8_21770001 chr2L_21770001 RAL-227 309 chr2L 21806245 21806260 chr2L 21806348 21806363 5 103 1.0 1.0 1.0 2.5 118 chr2L 21806245 intergenic not near genes chr2L 21806304 intergenic not near genes chr2L 21806363 intergenic not near genes chr2L_5_21805001 chr2L_21805001 RAL-227 310 chr2L 21809013 21809043 chr2L 21809219 21809249 6 205 4.5 0.5 2.5 1.7 236 chr2L 21809013 intergenic not near genes chr2L 21809131 intergenic not near genes chr2L 21809249 intergenic not near genes chr2L_6_21805001 chr2L_21805001 RAL-227 311 chr2L 21855476 21855510 chr2L 21855562 21855597 5 86 0.5 1.5 1.0 2.5 121 chr2L 21855476 intron CR44917 + chr2L 21855536 intron CR44917 + chr2L 21855597 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-227 312 chr2L 21859317 21859340 chr2L 21859397 21859403 9 76 1.5 1.5 1.5 3.6 86 chr2L 21859317 intron CR44917 + chr2L 21859360 intron CR44917 + chr2L 21859403 intron CR44917 + chr2L_9_21855001 chr2L_21855001 RAL-227 313 chr2L 21903298 21903329 chr2L 21903423 21903455 6 126 3.5 1.5 2.5 1.7 157 chr2L 21903298 exon CG1421 + chr2L 21903376 exon CG1421 + chr2L 21903455 exon CG1421 + chr2L_6_21900001 chr2L_21900001 RAL-227 314 chr2L 21981683 21981714 chr2L 21990848 21990879 roo 8 9164 3.5 3.5 3.5 1.8 9196 chr2L 21981683 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-227 315 chr2L 22001646 22001675 chr2L 22001722 22001751 9 76 1.0 4.0 2.5 2.6 105 chr2L 22001646 intergenic not near genes chr2L 22001698 intergenic not near genes chr2L 22001751 intergenic not near genes chr2L_9_22000001 chr2L_22000001 RAL-227 316 chr2L 22025832 22025853 chr2L 22025907 22025932 4 78 0.0 1.5 0.8 2.2 100 chr2L 22025832 intergenic tio + chr2L 22025882 intergenic tio + chr2L 22025932 intergenic tio + chr2L_4_22025001 chr2L_22025001 RAL-227 317 chr2L 22179552 22179574 chr2L 22179629 22179650 11 75 3.0 5.0 4.0 2.2 98 chr2L 22179552 intron CG3635 + chr2L 22179601 intron CG3635 + chr2L 22179650 intron CG3635 + chr2L_11_22175001 chr2L_22175001 RAL-227 318 chr2L 22192025 22192055 chr2L 22192113 22192141 5 87 3.5 1.0 2.2 1.6 116 chr2L 22192025 intron Ir40a - chr2L 22192083 intron Ir40a - chr2L 22192141 intron Ir40a - chr2L_5_22190001 chr2L_22190001 RAL-227 319 chr2L 22239426 22239446 chr2L 22239506 22239526 7 81 1.5 2.0 1.8 2.5 100 chr2L 22239426 3` UTR CR43765 - chr2L 22239476 3` UTR CR43765 - chr2L 22239526 3` UTR CR43765 - chr2L_7_22235001 chr2L_22235001 RAL-227 320 chr2L 22258621 22258644 chr2L 22260745 22260768 G6 5 2124 2.0 0.5 1.2 2.3 2147 chr2L 22258621 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260768 intergenic not near genes chr2L_5_22255001 chr2L_22255001 RAL-227 321 chr2L 22490515 22490523 chr2L 22497636 22497638 springer 4 7123 9.0 9.5 9.2 0.4 7123 chr2L 22490515 intergenic not near genes chr2L 22494076 intergenic not near genes chr2L 22497638 intergenic not near genes chr2L_4_22490001 chr2L_22490001 RAL-227 322 chr2L 22548921 22548945 chr2L 22550144 22550170 1360 11 1225 0.0 1.5 0.8 6.1 1249 chr2L 22548921 intergenic CG17490 + chr2L 22549546 intergenic not near genes chr2L 22550170 intergenic CG17493 + chr2L_11_22545001 chr2L_22545001 RAL-227 323 chr2L 22706814 22706839 chr2L 22706917 22706942 6 103 1.5 3.5 2.5 1.7 128 chr2L 22706814 intron CG40006 - chr2L 22706878 intron CG40006 - chr2L 22706942 intron CG40006 - chr2L_6_22705001 chr2L_22705001 RAL-227 324 chr2L 23181402 23181427 chr2L 23181507 23181536 9 107 1.5 2.0 1.8 3.2 134 chr2L 23181402 intergenic not near genes chr2L 23181469 intergenic not near genes chr2L 23181536 intergenic not near genes chr2L_9_23180001 chr2L_23180001 RAL-227 325 chr2R 529322 529354 chr2R 537947 537978 Max-element 4 8624 2.5 1.0 1.8 1.4 8656 chr2R 529322 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537978 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-227 326 chr2R 1340074 1340082 chr2R 1340155 1340171 4 87 5.5 8.0 6.8 0.5 97 chr2R 1340074 intergenic not near genes chr2R 1340122 intergenic not near genes chr2R 1340171 intergenic not near genes chr2R_4_1340001 chr2R_1340001 RAL-227 327 chr2R 3293750 3293771 chr2R 3293827 3293848 6 78 1.0 2.0 1.5 2.4 98 chr2R 3293750 intergenic not near genes chr2R 3293799 intergenic not near genes chr2R 3293848 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-227 328 chr2R 4580590 4580607 chr2R 4580796 4580813 4 206 2.0 2.0 2.0 1.3 223 chr2R 4580590 intergenic not near genes chr2R 4580702 intergenic not near genes chr2R 4580813 intergenic not near genes chr2R_4_4580001 chr2R_4580001 RAL-227 329 chr2R 4957021 4957044 chr2R 4957124 4957146 6 102 1.5 3.5 2.5 1.7 125 chr2R 4957021 intron Ir41a + chr2R 4957084 intron Ir41a + chr2R 4957146 intron Ir41a + chr2R_6_4955001 chr2R_4955001 RAL-227 330 chr2R 5008875 5008893 chr2R 5009942 5009962 6 1069 0.0 1.0 0.5 4.0 1087 chr2R 5008875 intron Ir41a + chr2R 5009418 intron Ir41a + chr2R 5009962 intron Ir41a + chr2R_6_5005001 chr2R_5005001 RAL-227 331 chr2R 5028512 5028530 chr2R 5028705 5028715 7 192 8.0 0.0 4.0 1.4 203 chr2R 5028512 intergenic not near genes chr2R 5028614 intergenic not near genes chr2R 5028715 intergenic not near genes chr2R_7_5025001 chr2R_5025001 RAL-227 332 chr2R 5125253 5125269 chr2R 5125571 5125587 5 318 0.0 2.5 1.2 2.3 334 chr2R 5125253 intron gus - chr2R 5125420 intron gus - chr2R 5125587 intron gus - chr2R_5_5125001 chr2R_5125001 RAL-227 333 chr2R 5237367 5237373 chr2R 5237449 5237455 4 82 0.5 0.0 0.2 3.3 88 chr2R 5237367 intron Nipped-A - chr2R 5237411 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-227 334 chr2R 5256757 5256789 chr2R 5256845 5256876 16 87 3.5 5.5 4.5 2.9 119 chr2R 5256757 intergenic not near genes chr2R 5256816 intergenic not near genes chr2R 5256876 intergenic not near genes chr2R_16_5255001 chr2R_5255001 RAL-227 335 chr2R 5258561 5258569 chr2R 5262244 5262252 S-element 4 3683 6.0 13.5 9.8 0.4 3691 chr2R 5258561 intergenic d4 + chr2R 5260406 intron d4 + chr2R 5262252 intron d4 + chr2R_4_5260001 chr2R_5260001 RAL-227 336 chr2R 5421529 5421562 chr2R 5421614 5421644 10 84 24.5 22.0 23.2 0.4 115 chr2R 5421529 intron laccase2 + chr2R 5421586 intron laccase2 + chr2R 5421644 intron laccase2 + chr2R_10_5420001 chr2R_5420001 RAL-227 337 chr2R 5491664 5491697 chr2R 5491757 5491788 12 93 2.5 4.5 3.5 2.7 124 chr2R 5491664 intron CG30440 - chr2R 5491726 intron CG30440 - chr2R 5491788 intron CG30440 - chr2R_12_5490001 chr2R_5490001 RAL-227 338 chr2R 5581406 5581425 chr2R 5627615 5627634 5 46209 1.0 11.5 6.2 0.7 46228 chr2R 5581406 intergenic not near genes chr2R 5604520 intron Fis1 - chr2R 5627634 intergenic not near genes chr2R_5_5600001 chr2R_5600001 RAL-227 339 chr2R 5653360 5653384 chr2R 5653459 5653483 4 99 1.5 2.0 1.8 1.4 123 chr2R 5653360 intergenic CG1344 + chr2R 5653422 intergenic CG1344 + chr2R 5653483 intergenic CG1344 + chr2R_4_5650001 chr2R_5650001 RAL-227 340 chr2R 5664281 5664312 chr2R 5664361 5664392 11 79 1.5 1.0 1.2 5.0 111 chr2R 5664281 5` UTR CR45472 + chr2R 5664336 intron CR45472 + chr2R 5664392 intron CR45472 + chr2R_11_5660001 chr2R_5660001 RAL-227 341 chr2R 5696851 5696863 chr2R 5696933 5696945 5 82 2.0 2.5 2.2 1.6 94 chr2R 5696851 intergenic not near genes chr2R 5696898 intergenic not near genes chr2R 5696945 intergenic not near genes chr2R_5_5695001 chr2R_5695001 RAL-227 342 chr2R 5790464 5790497 chr2R 5790549 5790582 12 85 0.5 2.0 1.2 5.5 118 chr2R 5790464 intergenic not near genes chr2R 5790523 intergenic not near genes chr2R 5790582 intergenic not near genes chr2R_12_5790001 chr2R_5790001 RAL-227 343 chr2R 5869287 5869296 chr2R 5874363 5874372 flea 6 5076 5.0 4.5 4.8 1.0 5085 chr2R 5869287 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874372 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-227 344 chr2R 5876870 5876904 chr2R 5876972 5877006 11 102 2.5 1.5 2.0 3.7 136 chr2R 5876870 intergenic not near genes chr2R 5876938 intergenic not near genes chr2R 5877006 intergenic not near genes chr2R_11_5875001 chr2R_5875001 RAL-227 345 chr2R 5878928 5878958 chr2R 5879007 5879038 7 80 0.0 0.0 0.0 7.0 110 chr2R 5878928 intergenic CG44438 - chr2R 5878983 intergenic CG44438 - chr2R 5879038 intergenic CG44438 - chr2R_7_5875001 chr2R_5875001 RAL-227 346 chr2R 6065754 6065783 chr2R 6065861 6065895 5 110 1.5 0.5 1.0 2.5 141 chr2R 6065754 intron CCHa2-R + chr2R 6065824 intron CCHa2-R + chr2R 6065895 exon CCHa2-R + chr2R_5_6065001 chr2R_6065001 RAL-227 347 chr2R 6088378 6088389 chr2R 6088471 6088482 5 93 0.0 1.5 0.8 2.8 104 chr2R 6088378 intergenic not near genes chr2R 6088430 intergenic not near genes chr2R 6088482 intergenic not near genes chr2R_5_6085001 chr2R_6085001 RAL-227 348 chr2R 6096727 6096737 chr2R 6101921 6101931 BS 4 5194 3.5 3.5 3.5 0.9 5204 chr2R 6096727 intron EcR - chr2R 6099329 intron EcR - chr2R 6101931 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-227 349 chr2R 6096739 6096751 chr2R 6101916 6101949 BS 5 5194 2.5 3.0 2.8 1.3 5210 chr2R 6096739 intron EcR - chr2R 6099344 intron EcR - chr2R 6101949 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-227 350 chr2R 6175599 6175623 chr2R 6175686 6175711 6 88 1.0 1.5 1.2 2.7 112 chr2R 6175599 3` UTR Cyp6w1 + chr2R 6175655 3` UTR Cyp6w1 + chr2R 6175711 3` UTR Cyp6w1 + chr2R_6_6175001 chr2R_6175001 RAL-227 351 chr2R 6178130 6178145 chr2R 6178254 6178271 4 126 0.5 3.5 2.0 1.3 141 chr2R 6178130 intergenic not near genes chr2R 6178200 intergenic not near genes chr2R 6178271 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-227 352 chr2R 6178678 6178702 chr2R 6178765 6178789 8 87 3.0 1.5 2.2 2.5 111 chr2R 6178678 intergenic not near genes chr2R 6178734 intergenic not near genes chr2R 6178789 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-227 353 chr2R 6500955 6500986 chr2R 6501049 6501081 12 94 6.0 3.5 4.8 2.1 126 chr2R 6500955 intergenic not near genes chr2R 6501018 intergenic not near genes chr2R 6501081 intergenic not near genes chr2R_12_6500001 chr2R_6500001 RAL-227 354 chr2R 6530772 6530788 chr2R 6530852 6530868 7 80 0.0 1.0 0.5 4.7 96 chr2R 6530772 intron jing + chr2R 6530820 intron jing + chr2R 6530868 intron jing + chr2R_7_6530001 chr2R_6530001 RAL-227 355 chr2R 6555639 6555658 chr2R 6555716 6555735 5 77 1.0 5.0 3.0 1.2 96 chr2R 6555639 intron jing + chr2R 6555687 intron jing + chr2R 6555735 intron jing + chr2R_5_6555001 chr2R_6555001 RAL-227 356 chr2R 6579772 6579800 chr2R 6584857 6584886 flea 5 5086 2.0 1.0 1.5 2.0 5114 chr2R 6579772 intron jing + chr2R 6582329 intron jing + chr2R 6584886 intron jing + chr2R_5_6580001 chr2R_6580001 RAL-227 357 chr2R 6623584 6623610 chr2R 6623673 6623699 6 89 3.0 3.0 3.0 1.5 115 chr2R 6623584 intergenic CG33919 - chr2R 6623642 intergenic CG33919 - chr2R 6623699 intergenic CG33919 - chr2R_6_6620001 chr2R_6620001 RAL-227 358 chr2R 6691132 6691146 chr2R 6691211 6691225 5 79 2.5 1.5 2.0 1.7 93 chr2R 6691132 intron CG9422 + chr2R 6691178 intron CG9422 + chr2R 6691225 intron CG9422 + chr2R_5_6690001 chr2R_6690001 RAL-227 359 chr2R 6696607 6696642 chr2R 6696689 6696710 7 80 4.0 2.5 3.2 1.7 103 chr2R 6696607 5` UTR Mob4 - chr2R 6696658 5` UTR Mob4 - chr2R 6696710 intergenic Rab2 +,Mob4 - chr2R_7_6695001 chr2R_6695001 RAL-227 360 chr2R 6757375 6757403 chr2R 6757550 6757572 6 173 1.5 1.5 1.5 2.4 197 chr2R 6757375 intergenic CG3420 -,CG9436 - chr2R 6757474 intergenic CG9436 -,CG3420 - chr2R 6757572 intergenic CG9436 -,CG3420 - chr2R_6_6755001 chr2R_6755001 RAL-227 361 chr2R 6869703 6869732 chr2R 6869870 6869899 10 164 3.5 1.5 2.5 2.9 196 chr2R 6869703 intron coro - chr2R 6869801 intron coro - chr2R 6869899 intron coro - chr2R_10_6865001 chr2R_6865001 RAL-227 362 chr2R 6952171 6952185 chr2R 6959751 6959765 opus 6 7580 2.5 4.0 3.2 1.4 7594 chr2R 6952171 intron,intron mim -,CheB42c - chr2R 6955968 intron,intron mim -,CheB42c - chr2R 6959765 intron,intron mim -,CheB42c - chr2R_6_6955001 chr2R_6955001 RAL-227 363 chr2R 6964284 6964311 chr2R 6964361 6964388 4 74 0.0 2.5 1.2 1.8 104 chr2R 6964284 intron,intron mim -,CheB42c - chr2R 6964336 intron,intron mim -,CheB42c - chr2R 6964388 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-227 364 chr2R 7025906 7025924 chr2R 7025995 7026013 10 88 3.5 3.5 3.5 2.2 107 chr2R 7025906 intron Tsp42Ef + chr2R 7025960 intron Tsp42Ef + chr2R 7026013 intron Tsp42Ef + chr2R_10_7025001 chr2R_7025001 RAL-227 365 chr2R 7025925 7025928 chr2R 7025990 7026017 6 84 3.0 3.0 3.0 1.5 92 chr2R 7025925 intron Tsp42Ef + chr2R 7025971 intron Tsp42Ef + chr2R 7026017 intron Tsp42Ef + chr2R_6_7025001 chr2R_7025001 RAL-227 366 chr2R 7160570 7160582 chr2R 7160648 7160660 6 77 2.5 0.0 1.2 2.7 90 chr2R 7160570 intron pk + chr2R 7160615 intron pk + chr2R 7160660 intron pk + chr2R_6_7160001 chr2R_7160001 RAL-227 367 chr2R 7164271 7164288 chr2R 7164462 7164479 5 191 1.5 6.5 4.0 1.0 208 chr2R 7164271 intron pk + chr2R 7164375 intron pk + chr2R 7164479 intron pk + chr2R_5_7160001 chr2R_7160001 RAL-227 368 chr2R 7196566 7196598 chr2R 7201341 7201373 F-element 5 4775 2.0 1.5 1.8 1.8 4807 chr2R 7196566 intron pk + chr2R 7198970 intron pk + chr2R 7201373 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-227 369 chr2R 7310765 7310795 chr2R 7310847 7310876 8 80 2.5 1.5 2.0 2.7 111 chr2R 7310765 intergenic not near genes chr2R 7310820 intergenic not near genes chr2R 7310876 intergenic not near genes chr2R_8_7310001 chr2R_7310001 RAL-227 370 chr2R 7608416 7608432 chr2R 7613619 7613635 I-element 4 5202 4.0 2.5 3.2 1.0 5219 chr2R 7608416 intron CG1358 - chr2R 7611026 intron CG1358 - chr2R 7613635 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-227 371 chr2R 7629297 7629312 chr2R 7629416 7629430 4 118 2.0 0.5 1.2 1.8 133 chr2R 7629297 intron CG43340 + chr2R 7629364 intron CG43340 + chr2R 7629430 intron CG43340 + chr2R_4_7625001 chr2R_7625001 RAL-227 372 chr2R 7642870 7642891 chr2R 7642950 7642971 7 80 1.5 2.5 2.0 2.3 101 chr2R 7642870 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642971 intron CG43340 + chr2R_7_7640001 chr2R_7640001 RAL-227 373 chr2R 7692017 7692032 chr2R 7692098 7692113 5 81 2.5 2.0 2.2 1.6 96 chr2R 7692017 intron CG1399 - chr2R 7692065 intron CG1399 - chr2R 7692113 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-227 374 chr2R 7714081 7714117 chr2R 7714157 7714193 6 76 1.5 0.0 0.8 3.3 112 chr2R 7714081 exon CG1942 + chr2R 7714137 3` UTR CG1942 + chr2R 7714193 intergenic CG1942 + chr2R_6_7710001 chr2R_7710001 RAL-227 375 chr2R 7815670 7815699 chr2R 7822139 7822168 Burdock 8 6469 3.5 1.0 2.2 2.5 6498 chr2R 7815670 intergenic CG1882 + chr2R 7818919 intergenic not near genes chr2R 7822168 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-227 376 chr2R 7851269 7851291 chr2R 7851355 7851377 8 85 2.5 0.5 1.5 3.2 108 chr2R 7851269 intron Dgk - chr2R 7851323 intron Dgk - chr2R 7851377 intron Dgk - chr2R_8_7850001 chr2R_7850001 RAL-227 377 chr2R 7869197 7869216 chr2R 7873983 7874002 Doc 7 4786 3.0 5.0 4.0 1.4 4805 chr2R 7869197 intron Dgk - chr2R 7871600 intron Dgk - chr2R 7874002 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-227 378 chr2R 8003083 8003092 chr2R 8003180 8003186 4 96 1.0 1.0 1.0 2.0 103 chr2R 8003083 intergenic not near genes chr2R 8003134 intergenic not near genes chr2R 8003186 intergenic not near genes chr2R_4_8000001 chr2R_8000001 RAL-227 379 chr2R 8067065 8067097 chr2R 8067149 8067181 6 84 1.0 1.5 1.2 2.7 116 chr2R 8067065 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067181 exon CG17977 - chr2R_6_8065001 chr2R_8065001 RAL-227 380 chr2R 8076682 8076691 chr2R 8076762 8076770 6 80 6.0 2.5 4.2 1.2 88 chr2R 8076682 intron lig + chr2R 8076726 intron lig + chr2R 8076770 intron lig + chr2R_6_8075001 chr2R_8075001 RAL-227 381 chr2R 8089254 8089288 chr2R 8089340 8089374 11 86 1.5 1.0 1.2 5.0 120 chr2R 8089254 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089374 intergenic sut2 +,sut3 + chr2R_11_8085001 chr2R_8085001 RAL-227 382 chr2R 8114030 8114050 chr2R 8114119 8114139 5 89 0.0 0.5 0.2 4.2 109 chr2R 8114030 intergenic Asap - chr2R 8114084 intergenic Asap - chr2R 8114139 intergenic Asap - chr2R_5_8110001 chr2R_8110001 RAL-227 383 chr2R 8157902 8157911 chr2R 8157990 8157999 6 88 2.5 2.5 2.5 1.7 97 chr2R 8157902 5` UTR CR44068 + chr2R 8157950 5` UTR CR44068 + chr2R 8157999 5` UTR CR44068 + chr2R_6_8155001 chr2R_8155001 RAL-227 384 chr2R 8330862 8330891 chr2R 8331348 8331377 roo 6 486 7.0 0.5 3.8 1.2 515 chr2R 8330862 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-227 385 chr2R 8350118 8350135 chr2R 8350195 8350212 7 77 1.0 2.0 1.5 2.8 94 chr2R 8350118 intron pdm3 + chr2R 8350165 intron pdm3 + chr2R 8350212 intron pdm3 + chr2R_7_8350001 chr2R_8350001 RAL-227 386 chr2R 8508770 8508795 chr2R 8508853 8508878 4 83 0.5 4.0 2.2 1.2 108 chr2R 8508770 intron mtt - chr2R 8508824 intron mtt - chr2R 8508878 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-227 387 chr2R 8602106 8602135 chr2R 8602610 8602640 7 505 2.5 1.5 2.0 2.3 534 chr2R 8602106 intron rgr + chr2R 8602373 intron rgr + chr2R 8602640 intron rgr + chr2R_7_8600001 chr2R_8600001 RAL-227 388 chr2R 8635925 8635927 chr2R 8636003 8636005 5 78 0.0 5.0 2.5 1.4 80 chr2R 8635925 intergenic not near genes chr2R 8635965 intergenic not near genes chr2R 8636005 intergenic not near genes chr2R_5_8635001 chr2R_8635001 RAL-227 389 chr2R 8644170 8644191 chr2R 8644268 8644284 5 96 3.5 0.5 2.0 1.7 114 chr2R 8644170 intergenic not near genes chr2R 8644227 intergenic not near genes chr2R 8644284 intergenic not near genes chr2R_5_8640001 chr2R_8640001 RAL-227 390 chr2R 8714707 8714721 chr2R 8714794 8714808 5 86 0.0 3.5 1.8 1.8 101 chr2R 8714707 3` UTR PGRP-SC1b + chr2R 8714758 3` UTR PGRP-SC1b + chr2R 8714808 3` UTR PGRP-SC1b + chr2R_5_8710001 chr2R_8710001 RAL-227 391 chr2R 8833436 8833453 chr2R 8833518 8833535 6 81 2.0 2.0 2.0 2.0 99 chr2R 8833436 intron sns + chr2R 8833486 intron sns + chr2R 8833535 intron sns + chr2R_6_8830001 chr2R_8830001 RAL-227 392 chr2R 9055796 9055822 chr2R 9055874 9055902 6 78 2.5 2.0 2.2 1.9 106 chr2R 9055796 intron CG13743 - chr2R 9055849 intron CG13743 - chr2R 9055902 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-227 393 chr2R 9065932 9065950 chr2R 9066014 9066032 5 78 1.0 2.5 1.8 1.8 100 chr2R 9065932 intron ana + chr2R 9065982 intron ana + chr2R 9066032 intron ana + chr2R_5_9065001 chr2R_9065001 RAL-227 394 chr2R 9212691 9212711 chr2R 9213177 9213197 roo 4 486 4.0 3.0 3.5 0.9 506 chr2R 9212691 intergenic CR45309 + chr2R 9212944 intergenic CR45309 + chr2R 9213197 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-227 395 chr2R 9323497 9323515 chr2R 9326092 9326127 9 2601 12.5 17.5 15.0 0.6 2630 chr2R 9323497 intron,intron CG13739 -,CG13954 - chr2R 9324812 intron,intron CG13739 -,CG13954 - chr2R 9326127 intron,intron CG13739 -,CG13954 - chr2R_9_9320001 chr2R_9320001 RAL-227 396 chr2R 9352253 9352258 chr2R 9361403 9361408 roo 4 9150 2.0 4.5 3.2 1.0 9155 chr2R 9352253 intron CG13954 - chr2R 9356830 intron CG13954 - chr2R 9361408 intron CG13954 - chr2R_4_9355001 chr2R_9355001 RAL-227 397 chr2R 9368126 9368155 chr2R 9368202 9368231 9 74 1.0 0.0 0.5 6.0 105 chr2R 9368126 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368231 intron CG13954 - chr2R_9_9365001 chr2R_9365001 RAL-227 398 chr2R 9388658 9388686 chr2R 9388745 9388773 5 87 1.0 2.5 1.8 1.8 115 chr2R 9388658 5` UTR CG13954 - chr2R 9388716 5` UTR CG13954 - chr2R 9388773 5` UTR CG13954 - chr2R_5_9385001 chr2R_9385001 RAL-227 399 chr2R 9407831 9407860 chr2R 9407917 9407953 9 91 3.5 4.0 3.8 1.9 122 chr2R 9407831 intron wun - chr2R 9407892 intron wun - chr2R 9407953 intron wun - chr2R_9_9405001 chr2R_9405001 RAL-227 400 chr2R 9650948 9650964 chr2R 9651031 9651056 7 90 2.0 3.0 2.5 2.0 108 chr2R 9650948 intron Mmp2 - chr2R 9651002 intron Mmp2 - chr2R 9651056 intron Mmp2 - chr2R_7_9650001 chr2R_9650001 RAL-227 401 chr2R 9697252 9697270 chr2R 9697341 9697358 4 89 0.5 6.0 3.2 1.0 106 chr2R 9697252 intergenic not near genes chr2R 9697305 intergenic not near genes chr2R 9697358 intergenic not near genes chr2R_4_9695001 chr2R_9695001 RAL-227 402 chr2R 9726618 9726640 chr2R 9734169 9734191 17.6 5 7551 3.0 3.5 3.2 1.2 7573 chr2R 9726618 intron sqa - chr2R 9730404 intron sqa - chr2R 9734191 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-227 403 chr2R 9782445 9782473 chr2R 9782534 9782562 7 89 2.5 1.5 2.0 2.3 117 chr2R 9782445 intron CG1688 - chr2R 9782504 intron CG1688 - chr2R 9782562 intron CG1688 - chr2R_7_9780001 chr2R_9780001 RAL-227 404 chr2R 9830285 9830298 chr2R 9830365 9830380 6 79 1.0 5.5 3.2 1.4 95 chr2R 9830285 intron hebe - chr2R 9830332 intron hebe - chr2R 9830380 intron hebe - chr2R_6_9830001 chr2R_9830001 RAL-227 405 chr2R 9945445 9945469 chr2R 9945626 9945665 BS 4 192 3.5 3.0 3.2 1.0 220 chr2R 9945445 intron Mef2 - chr2R 9945555 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-227 406 chr2R 10005846 10005876 chr2R 10007011 10007041 1360 8 1162 2.5 2.0 2.2 2.5 1195 chr2R 10005846 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007041 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-227 407 chr2R 10107185 10107212 chr2R 10107272 10107299 5 87 1.5 1.5 1.5 2.0 114 chr2R 10107185 intron 14-3-3zeta + chr2R 10107242 intron 14-3-3zeta + chr2R 10107299 intron 14-3-3zeta + chr2R_5_10105001 chr2R_10105001 RAL-227 408 chr2R 10176884 10176909 chr2R 10186050 10186076 roo 5 9167 3.0 1.0 2.0 1.7 9192 chr2R 10176884 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186076 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-227 409 chr2R 10197387 10197418 chr2R 10197472 10197504 5 85 0.5 0.5 0.5 3.3 117 chr2R 10197387 3` UTR CG34221 - chr2R 10197446 3` UTR CG34221 - chr2R 10197504 3` UTR CG34221 - chr2R_5_10195001 chr2R_10195001 RAL-227 410 chr2R 10203647 10203660 chr2R 10203732 10203745 5 84 2.5 0.0 1.2 2.3 98 chr2R 10203647 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203745 intergenic not near genes chr2R_5_10200001 chr2R_10200001 RAL-227 411 chr2R 10313317 10313351 chr2R 10313405 10313439 9 88 1.5 2.5 2.0 3.0 122 chr2R 10313317 intergenic not near genes chr2R 10313378 intergenic not near genes chr2R 10313439 intergenic Ndg + chr2R_9_10310001 chr2R_10310001 RAL-227 412 chr2R 10318527 10318542 chr2R 10318613 10318628 5 84 1.0 3.0 2.0 1.7 101 chr2R 10318527 intron Ndg + chr2R 10318578 intron Ndg + chr2R 10318628 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-227 413 chr2R 10352678 10352698 chr2R 10352755 10352775 5 75 2.5 1.5 2.0 1.7 97 chr2R 10352678 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352775 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-227 414 chr2R 10429019 10429040 chr2R 10429096 10429116 10 76 5.0 1.5 3.2 2.4 97 chr2R 10429019 intergenic not near genes chr2R 10429068 intergenic not near genes chr2R 10429116 intergenic not near genes chr2R_10_10425001 chr2R_10425001 RAL-227 415 chr2R 10454109 10454127 chr2R 10454186 10454204 5 76 3.0 3.5 3.2 1.2 95 chr2R 10454109 intron,intron Galphao +,Cyp49a1 - chr2R 10454156 intron,intron Galphao +,Cyp49a1 - chr2R 10454204 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-227 416 chr2R 10469026 10469056 chr2R 10469152 10469182 17 124 2.5 4.5 3.5 3.8 156 chr2R 10469026 intron CG11777 + chr2R 10469104 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_17_10465001 chr2R_10465001 RAL-227 417 chr2R 10551146 10551153 chr2R 10551266 10551273 4 120 0.0 0.0 0.0 4.0 127 chr2R 10551146 intergenic not near genes chr2R 10551210 intergenic not near genes chr2R 10551273 intergenic not near genes chr2R_4_10550001 chr2R_10550001 RAL-227 418 chr2R 10790145 10790177 chr2R 10790233 10790265 4 88 1.5 2.0 1.8 1.4 120 chr2R 10790145 intron CG33144 - chr2R 10790205 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_4_10790001 chr2R_10790001 RAL-227 419 chr2R 10796014 10796034 chr2R 10796096 10796116 8 82 2.5 1.5 2.0 2.7 102 chr2R 10796014 intron CG33144 - chr2R 10796065 intron CG33144 - chr2R 10796116 intron CG33144 - chr2R_8_10795001 chr2R_10795001 RAL-227 420 chr2R 10948026 10948047 chr2R 10955576 10955597 17.6 8 7550 1.0 4.5 2.8 2.1 7571 chr2R 10948026 intergenic not near genes chr2R 10951812 intergenic not near genes chr2R 10955597 intergenic not near genes chr2R_8_10950001 chr2R_10950001 RAL-227 421 chr2R 10979667 10979687 chr2R 10980139 10980158 297 4 472 0.0 2.5 1.2 1.8 491 chr2R 10979667 intergenic not near genes chr2R 10979912 intergenic not near genes chr2R 10980158 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-227 422 chr2R 11009813 11009847 chr2R 11018987 11019021 roo 9 9174 2.5 0.5 1.5 3.6 9208 chr2R 11009813 intron luna - chr2R 11014417 intron luna - chr2R 11019021 intron luna - chr2R_9_11010001 chr2R_11010001 RAL-227 423 chr2R 11019878 11019904 chr2R 11024940 11024968 jockey 4 5064 1.5 2.0 1.8 1.4 5090 chr2R 11019878 intron luna - chr2R 11022423 intron luna - chr2R 11024968 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-227 424 chr2R 11168065 11168096 chr2R 11168146 11168177 11 80 2.5 0.5 1.5 4.4 112 chr2R 11168065 intron,intron CG13229 -,shn + chr2R 11168121 intron,intron CG13229 -,shn + chr2R 11168177 intron,intron CG13229 -,shn + chr2R_11_11165001 chr2R_11165001 RAL-227 425 chr2R 11256284 11256310 chr2R 11256474 11256500 6 190 2.5 2.0 2.2 1.9 216 chr2R 11256284 intergenic CG13223 +,Cpr47Eb + chr2R 11256392 intergenic CG13223 +,Cpr47Eb + chr2R 11256500 intergenic CG13223 + chr2R_6_11255001 chr2R_11255001 RAL-227 426 chr2R 11292968 11292990 chr2R 11293047 11293067 7 78 1.5 0.0 0.8 3.9 99 chr2R 11292968 exon,3` UTR dare -,CG30033 + chr2R 11293018 5` UTR,3` UTR dare -,CG30033 + chr2R 11293067 5` UTR,3` UTR dare -,CG30033 + chr2R_7_11290001 chr2R_11290001 RAL-227 427 chr2R 11297631 11297641 chr2R 11301952 11301961 flea 5 4321 5.0 5.0 5.0 0.8 4330 chr2R 11297631 intergenic CG42336 - chr2R 11299796 intergenic not near genes chr2R 11301961 5` UTR CG7741 + chr2R_5_11295001 chr2R_11295001 RAL-227 428 chr2R 11344148 11344159 chr2R 11344244 11344255 4 96 0.0 5.5 2.8 1.1 107 chr2R 11344148 intergenic alphaTry - chr2R 11344202 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-227 429 chr2R 11471123 11471151 chr2R 11471211 11471235 7 84 4.0 2.5 3.2 1.7 112 chr2R 11471123 intergenic not near genes chr2R 11471179 intergenic not near genes chr2R 11471235 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-227 430 chr2R 11472648 11472680 chr2R 11473845 11473875 pogo 10 1196 2.0 2.5 2.2 3.1 1227 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-227 431 chr2R 11516579 11516607 chr2R 11516715 11516743 7 133 1.0 1.0 1.0 3.5 164 chr2R 11516579 intergenic not near genes chr2R 11516661 intergenic not near genes chr2R 11516743 intergenic not near genes chr2R_7_11515001 chr2R_11515001 RAL-227 432 chr2R 11605294 11605302 chr2R 11605462 11605470 4 168 2.0 3.0 2.5 1.1 176 chr2R 11605294 intron tou - chr2R 11605382 intron tou - chr2R 11605470 intron tou - chr2R_4_11605001 chr2R_11605001 RAL-227 433 chr2R 11614622 11614782 chr2R 11614710 11614870 5 88 5.0 1.5 3.2 1.2 248 chr2R 11614622 intron tou - chr2R 11614746 intron tou - chr2R 11614870 intron tou - chr2R_5_11610001 chr2R_11610001 RAL-227 434 chr2R 11796955 11796973 chr2R 11797033 11797051 5 78 3.5 2.5 3.0 1.2 96 chr2R 11796955 intron ths + chr2R 11797003 intron ths + chr2R 11797051 intron ths + chr2R_5_11795001 chr2R_11795001 RAL-227 435 chr2R 12061058 12061080 chr2R 12061138 12061160 5 77 3.0 0.5 1.8 1.8 102 chr2R 12061058 intron Drep-3 + chr2R 12061109 intron Drep-3 + chr2R 12061160 intron Drep-3 + chr2R_5_12060001 chr2R_12060001 RAL-227 436 chr2R 12073147 12073410 chr2R 12073209 12073500 6 85 6.5 3.0 4.8 1.0 353 chr2R 12073147 intron CG8888 - chr2R 12073324 intron CG8888 - chr2R 12073500 intron CG8888 - chr2R_6_12070001 chr2R_12070001 RAL-227 437 chr2R 12073420 12073429 chr2R 12073510 12073519 6 90 1.5 3.5 2.5 1.7 99 chr2R 12073420 intron CG8888 - chr2R 12073470 intron CG8888 - chr2R 12073519 intron CG8888 - chr2R_6_12070001 chr2R_12070001 RAL-227 438 chr2R 12082760 12082792 chr2R 12082841 12082873 7 81 1.0 0.0 0.5 4.7 113 chr2R 12082760 intergenic not near genes chr2R 12082816 intergenic not near genes chr2R 12082873 intergenic not near genes chr2R_7_12080001 chr2R_12080001 RAL-227 439 chr2R 12104684 12104703 chr2R 12104764 12104782 6 79 6.0 2.0 4.0 1.2 98 chr2R 12104684 intron jeb - chr2R 12104733 intron jeb - chr2R 12104782 intron jeb - chr2R_6_12100001 chr2R_12100001 RAL-227 440 chr2R 12145914 12145946 chr2R 12148609 12148639 7 2695 22.0 19.5 20.8 0.3 2725 chr2R 12145914 exon Hen1 + chr2R 12147276 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_7_12145001 chr2R_12145001 RAL-227 441 chr2R 12186012 12186033 chr2R 12186107 12186128 8 95 3.5 3.0 3.2 1.9 116 chr2R 12186012 intron Cyp6g1 + chr2R 12186070 intron Cyp6g1 + chr2R 12186128 intron Cyp6g1 + chr2R_8_12185001 chr2R_12185001 RAL-227 442 chr2R 12187471 12187508 chr2R 12190087 12190124 24 2619 62.5 41.5 52.0 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_24_12185001 chr2R_12185001 RAL-227 443 chr2R 12217575 12217581 chr2R 12217656 12217662 4 81 4.5 4.0 4.2 0.8 87 chr2R 12217575 intergenic not near genes chr2R 12217618 intergenic not near genes chr2R 12217662 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-227 444 chr2R 12363379 12363417 chr2R 12363811 12363849 12 432 1.0 1.5 1.2 5.5 470 chr2R 12363379 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_12_12360001 chr2R_12360001 RAL-227 445 chr2R 12501710 12501719 chr2R 12503856 12503881 Rt1c 4 2158 2.0 4.0 3.0 1.0 2171 chr2R 12501710 intron fdl - chr2R 12502796 intron fdl - chr2R 12503881 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-227 446 chr2R 12610723 12610742 chr2R 12610818 12610837 7 95 4.0 2.0 3.0 1.8 114 chr2R 12610723 intron Amph + chr2R 12610780 intron Amph + chr2R 12610837 intron Amph + chr2R_7_12610001 chr2R_12610001 RAL-227 447 chr2R 12789300 12789323 chr2R 12797663 12797685 roo 4 8360 1.0 1.0 1.0 2.0 8385 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-227 448 chr2R 12819463 12819476 chr2R 12824532 12824545 jockey 4 5067 1.0 2.0 1.5 1.6 5082 chr2R 12819463 intergenic not near genes chr2R 12822004 intergenic not near genes chr2R 12824545 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-227 449 chr2R 12897471 12897485 chr2R 12897556 12897576 5 90 1.5 1.0 1.2 2.3 105 chr2R 12897471 intron vg + chr2R 12897524 intron vg + chr2R 12897576 intron vg + chr2R_5_12895001 chr2R_12895001 RAL-227 450 chr2R 13078760 13078783 chr2R 13078857 13078880 5 97 1.5 2.0 1.8 1.8 120 chr2R 13078760 intron Drl-2 - chr2R 13078820 intron Drl-2 - chr2R 13078880 intron Drl-2 - chr2R_5_13075001 chr2R_13075001 RAL-227 451 chr2R 13136851 13136870 chr2R 13141647 13141662 Doc 6 4796 4.0 3.5 3.8 1.2 4811 chr2R 13136851 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-227 452 chr2R 13432940 13432966 chr2R 13433016 13433023 9 74 0.5 2.0 1.2 4.1 83 chr2R 13432940 intron CG42321 - chr2R 13432982 intron CG42321 - chr2R 13433023 intron CG42321 - chr2R_9_13430001 chr2R_13430001 RAL-227 453 chr2R 13438864 13438887 chr2R 13440182 13440205 7 1318 12.0 22.0 17.0 0.4 1341 chr2R 13438864 5` UTR CG42321 - chr2R 13439534 3` UTR cnn - chr2R 13440205 exon cnn - chr2R_7_13435001 chr2R_13435001 RAL-227 454 chr2R 13580498 13580533 chr2R 13580848 13580878 jockey 6 349 0.0 2.5 1.2 2.7 380 chr2R 13580498 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580878 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-227 455 chr2R 13728150 13728167 chr2R 13735807 13735824 opus 4 7657 1.0 3.0 2.0 1.3 7674 chr2R 13728150 intron fas + chr2R 13731987 intron fas + chr2R 13735824 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-227 456 chr2R 13768984 13769010 chr2R 13769081 13769109 4 98 1.5 3.5 2.5 1.1 125 chr2R 13768984 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-227 457 chr2R 13905605 13905627 chr2R 13907587 13907599 Rt1a 10 1981 4.5 5.0 4.8 1.7 1994 chr2R 13905605 intron shot - chr2R 13906602 intron shot - chr2R 13907599 intron shot - chr2R_10_13905001 chr2R_13905001 RAL-227 458 chr2R 13925868 13925881 chr2R 13926022 13926035 4 154 3.0 2.0 2.5 1.1 167 chr2R 13925868 intron shot - chr2R 13925952 intron shot - chr2R 13926035 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-227 459 chr2R 14071728 14071759 chr2R 14072079 14072097 6 348 1.0 3.0 2.0 2.0 369 chr2R 14071728 intron Prosap - chr2R 14071912 intron Prosap - chr2R 14072097 intron Prosap - chr2R_6_14070001 chr2R_14070001 RAL-227 460 chr2R 14142446 14142475 chr2R 14142536 14142565 6 90 3.5 1.0 2.2 1.9 119 chr2R 14142446 intergenic not near genes chr2R 14142506 intergenic not near genes chr2R 14142565 intergenic not near genes chr2R_6_14140001 chr2R_14140001 RAL-227 461 chr2R 14294833 14294854 chr2R 14294913 14294934 6 80 2.0 2.0 2.0 2.0 101 chr2R 14294833 intron Ih + chr2R 14294884 intron Ih + chr2R 14294934 intron Ih + chr2R_6_14290001 chr2R_14290001 RAL-227 462 chr2R 14365298 14365332 chr2R 14365378 14365412 10 77 2.0 2.5 2.2 3.1 114 chr2R 14365298 exon Tfb1 + chr2R 14365355 3` UTR Tfb1 + chr2R 14365412 3` UTR Tfb1 + chr2R_10_14365001 chr2R_14365001 RAL-227 463 chr2R 14467316 14467323 chr2R 14476474 14476480 roo 5 9158 1.5 2.5 2.0 1.7 9164 chr2R 14467316 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476480 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-227 464 chr2R 14718113 14718146 chr2R 14718199 14718230 10 83 1.5 1.0 1.2 4.5 117 chr2R 14718113 intergenic not near genes chr2R 14718172 intergenic not near genes chr2R 14718230 intergenic not near genes chr2R_10_14715001 chr2R_14715001 RAL-227 465 chr2R 14850055 14850087 chr2R 14850161 14850193 8 104 15.5 18.0 16.8 0.4 138 chr2R 14850055 exon SMC2 - chr2R 14850124 intron SMC2 - chr2R 14850193 exon SMC2 - chr2R_8_14850001 chr2R_14850001 RAL-227 466 chr2R 14855030 14855060 chr2R 14855122 14855152 10 90 8.0 0.5 4.2 1.9 122 chr2R 14855030 5` UTR Ciao1 - chr2R 14855091 intergenic Ciao1 -,HPS1 + chr2R 14855152 intergenic Ciao1 -,HPS1 + chr2R_10_14855001 chr2R_14855001 RAL-227 467 chr2R 14889211 14889235 chr2R 14897819 14897843 Max-element 4 8608 1.5 0.0 0.8 2.2 8632 chr2R 14889211 intergenic Cyp6a8 - chr2R 14893527 intergenic not near genes chr2R 14897843 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-227 468 chr2R 14911701 14911723 chr2R 14911823 14911846 6 123 2.5 1.0 1.8 2.1 145 chr2R 14911701 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911846 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-227 469 chr2R 15004728 15004761 chr2R 15005055 15005090 jockey 10 327 1.5 3.0 2.2 3.1 362 chr2R 15004728 intergenic not near genes chr2R 15004909 intergenic not near genes chr2R 15005090 intergenic not near genes chr2R_10_15000001 chr2R_15000001 RAL-227 470 chr2R 15119322 15119350 chr2R 15127798 15127831 Tirant 5 8480 2.5 1.5 2.0 1.7 8509 chr2R 15119322 intron chn + chr2R 15123576 intron chn + chr2R 15127831 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-227 471 chr2R 15330204 15330236 chr2R 15330338 15330370 5 134 1.0 2.5 1.8 1.8 166 chr2R 15330204 intergenic CR44371 - chr2R 15330287 intergenic CR44371 - chr2R 15330370 intergenic CR44371 - chr2R_5_15330001 chr2R_15330001 RAL-227 472 chr2R 15534677 15534696 chr2R 15534756 15534775 6 79 2.5 2.5 2.5 1.7 98 chr2R 15534677 intron CG30471 + chr2R 15534726 intron CG30471 + chr2R 15534775 intron CG30471 + chr2R_6_15530001 chr2R_15530001 RAL-227 473 chr2R 15700259 15700273 chr2R 15700352 15700368 4 94 1.5 4.5 3.0 1.0 109 chr2R 15700259 intron,5` UTR CG30080 -,CG42662 - chr2R 15700314 intron,5` UTR CG30080 -,CG42662 - chr2R 15700368 intron,5` UTR CG30080 -,CG42662 - chr2R_4_15700001 chr2R_15700001 RAL-227 474 chr2R 15720771 15720798 chr2R 15720867 15720894 4 96 0.0 3.5 1.8 1.4 123 chr2R 15720771 intergenic not near genes chr2R 15720832 intergenic not near genes chr2R 15720894 intergenic not near genes chr2R_4_15720001 chr2R_15720001 RAL-227 475 chr2R 15786517 15786538 chr2R 15786675 15786696 9 158 2.0 4.0 3.0 2.2 179 chr2R 15786517 intron Zasp52 - chr2R 15786606 intron Zasp52 - chr2R 15786696 intron Zasp52 - chr2R_9_15785001 chr2R_15785001 RAL-227 476 chr2R 16059677 16059682 chr2R 16060101 16060105 4 424 1.5 9.0 5.2 0.6 428 chr2R 16059677 3` UTR CG8405 + chr2R 16059891 3` UTR CG8405 + chr2R 16060105 3` UTR CG8405 + chr2R_4_16055001 chr2R_16055001 RAL-227 477 chr2R 16245415 16245431 chr2R 16245509 16245525 5 93 0.0 1.0 0.5 3.3 110 chr2R 16245415 intron CngA - chr2R 16245470 intron CngA - chr2R 16245525 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-227 478 chr2R 16322310 16322340 chr2R 16322386 16322416 4 76 1.0 2.0 1.5 1.6 106 chr2R 16322310 5` UTR CG4282 + chr2R 16322363 intron CG4282 + chr2R 16322416 intron CG4282 + chr2R_4_16320001 chr2R_16320001 RAL-227 479 chr2R 16521493 16521518 chr2R 16521575 16521600 7 82 0.5 2.0 1.2 3.2 107 chr2R 16521493 intron Sema-2a + chr2R 16521546 intron Sema-2a + chr2R 16521600 intron Sema-2a + chr2R_7_16520001 chr2R_16520001 RAL-227 480 chr2R 16539651 16539664 chr2R 16544860 16544873 copia 4 5209 4.0 3.5 3.8 0.8 5222 chr2R 16539651 intergenic not near genes chr2R 16542262 intergenic not near genes chr2R 16544873 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-227 481 chr2R 16617059 16617090 chr2R 16617138 16617169 4 79 1.0 2.5 1.8 1.4 110 chr2R 16617059 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-227 482 chr2R 16775663 16775673 chr2R 16775930 16775940 4 267 3.0 3.0 3.0 1.0 277 chr2R 16775663 3` UTR Arp53D + chr2R 16775802 intergenic Arp53D + chr2R 16775940 intergenic Arp53D + chr2R_4_16775001 chr2R_16775001 RAL-227 483 chr2R 16918238 16918266 chr2R 16918315 16918343 6 77 2.0 1.0 1.5 2.4 105 chr2R 16918238 intergenic not near genes chr2R 16918290 intergenic not near genes chr2R 16918343 intergenic not near genes chr2R_6_16915001 chr2R_16915001 RAL-227 484 chr2R 17147247 17147269 chr2R 17152278 17152300 jockey 9 5031 1.5 3.5 2.5 2.6 5053 chr2R 17147247 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152300 intergenic not near genes chr2R_9_17145001 chr2R_17145001 RAL-227 485 chr2R 17161172 17161201 chr2R 17161257 17161262 5 80 2.0 4.0 3.0 1.2 90 chr2R 17161172 intergenic CG30457 - chr2R 17161217 intergenic CG30457 - chr2R 17161262 intergenic CG30457 - chr2R_5_17160001 chr2R_17160001 RAL-227 486 chr2R 17236506 17236539 chr2R 17241710 17241743 copia 9 5204 1.0 4.0 2.5 2.6 5237 chr2R 17236506 intron mbl + chr2R 17239124 intron mbl + chr2R 17241743 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-227 487 chr2R 17395281 17395318 chr2R 17395359 17395406 7 87 1.5 0.0 0.8 3.9 125 chr2R 17395281 intron Sip1 + chr2R 17395344 intron Sip1 + chr2R 17395406 intron Sip1 + chr2R_7_17395001 chr2R_17395001 RAL-227 488 chr2R 17459005 17459035 chr2R 17459090 17459120 7 85 2.5 1.5 2.0 2.3 115 chr2R 17459005 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459120 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-227 489 chr2R 17784030 17784054 chr2R 17784266 17784269 pogo 4 232 0.5 1.0 0.8 2.2 239 chr2R 17784030 intergenic mir-31a - chr2R 17784150 intergenic mir-31a - chr2R 17784269 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-227 490 chr2R 17860195 17860206 chr2R 17860277 17860287 4 82 0.0 0.5 0.2 3.3 92 chr2R 17860195 3` UTR olf186-F + chr2R 17860241 3` UTR olf186-F + chr2R 17860287 3` UTR olf186-F + chr2R_4_17860001 chr2R_17860001 RAL-227 491 chr2R 18124341 18124375 chr2R 18124418 18124452 10 77 2.0 0.5 1.2 4.5 111 chr2R 18124341 intron stau - chr2R 18124396 intron stau - chr2R 18124452 intron stau - chr2R_10_18120001 chr2R_18120001 RAL-227 492 chr2R 18255204 18255242 chr2R 18255284 18255322 15 75 3.0 3.0 3.0 3.8 118 chr2R 18255204 intergenic not near genes chr2R 18255263 intergenic not near genes chr2R 18255322 intergenic not near genes chr2R_15_18255001 chr2R_18255001 RAL-227 493 chr2R 18289442 18289452 chr2R 18289544 18289554 4 102 0.0 1.0 0.5 2.7 112 chr2R 18289442 intron,intron sbb -,CG14502 + chr2R 18289498 intron,intron sbb -,CG14502 + chr2R 18289554 exon,intron sbb -,CG14502 + chr2R_4_18285001 chr2R_18285001 RAL-227 494 chr2R 18308284 18308314 chr2R 18308388 18308420 9 105 3.5 2.0 2.8 2.4 136 chr2R 18308284 intron sbb - chr2R 18308352 intron sbb - chr2R 18308420 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-227 495 chr2R 18358394 18358421 chr2R 18372606 18372630 roo 9 14211 2.5 1.0 1.8 3.2 14236 chr2R 18358394 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372630 intergenic not near genes chr2R_9_18365001 chr2R_18365001 RAL-227 496 chr2R 18392036 18392064 chr2R 18392152 18392180 6 116 0.0 2.5 1.2 2.7 144 chr2R 18392036 intergenic not near genes chr2R 18392108 intergenic not near genes chr2R 18392180 intergenic not near genes chr2R_6_18390001 chr2R_18390001 RAL-227 497 chr2R 18405759 18405776 chr2R 18405837 18405857 5 80 1.0 3.0 2.0 1.7 98 chr2R 18405759 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405857 intergenic GstE6 + chr2R_5_18405001 chr2R_18405001 RAL-227 498 chr2R 18575795 18575822 chr2R 18581983 18582010 3S18 9 6185 3.0 3.5 3.2 2.1 6215 chr2R 18575795 intron GEFmeso - chr2R 18578902 intron GEFmeso - chr2R 18582010 intron GEFmeso - chr2R_9_18575001 chr2R_18575001 RAL-227 499 chr2R 18590887 18590901 chr2R 18600039 18600053 roo 6 9150 1.5 5.0 3.2 1.4 9166 chr2R 18590887 intron GEFmeso - chr2R 18595470 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-227 500 chr2R 18711425 18711447 chr2R 18711502 18711521 6 76 1.5 2.0 1.8 2.1 96 chr2R 18711425 5` UTR pncr016:2R + chr2R 18711473 5` UTR pncr016:2R + chr2R 18711521 intron pncr016:2R + chr2R_6_18710001 chr2R_18710001 RAL-227 501 chr2R 18738217 18738237 chr2R 18738293 18738313 5 76 1.5 1.5 1.5 2.0 96 chr2R 18738217 intron Hs3st-A + chr2R 18738265 intron Hs3st-A + chr2R 18738313 intron Hs3st-A + chr2R_5_18735001 chr2R_18735001 RAL-227 502 chr2R 18785916 18785944 chr2R 18785995 18786023 8 79 1.5 3.5 2.5 2.3 107 chr2R 18785916 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786023 intron CG15080 + chr2R_8_18785001 chr2R_18785001 RAL-227 503 chr2R 19010752 19010774 chr2R 19010860 19010887 5 106 2.0 3.0 2.5 1.4 135 chr2R 19010752 intergenic not near genes chr2R 19010820 intergenic not near genes chr2R 19010887 intergenic not near genes chr2R_5_19010001 chr2R_19010001 RAL-227 504 chr2R 19012942 19012970 chr2R 19013035 19013064 7 91 1.5 3.0 2.2 2.2 122 chr2R 19012942 intergenic not near genes chr2R 19013003 intergenic not near genes chr2R 19013064 intergenic not near genes chr2R_7_19010001 chr2R_19010001 RAL-227 505 chr2R 19076388 19076411 chr2R 19076493 19076519 4 102 1.0 1.5 1.2 1.8 131 chr2R 19076388 intron 5-HT1A + chr2R 19076454 intron 5-HT1A + chr2R 19076519 intron 5-HT1A + chr2R_4_19075001 chr2R_19075001 RAL-227 506 chr2R 19169540 19169567 chr2R 19169730 19169757 7 186 1.5 3.5 2.5 2.0 217 chr2R 19169540 intron CG10737 + chr2R 19169648 intron CG10737 + chr2R 19169757 intron CG10737 + chr2R_7_19165001 chr2R_19165001 RAL-227 507 chr2R 19300962 19300995 chr2R 19301045 19301078 11 83 1.5 4.0 2.8 2.9 116 chr2R 19300962 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301078 intron Tab2 + chr2R_11_19300001 chr2R_19300001 RAL-227 508 chr2R 19359052 19359069 chr2R 19359135 19359151 5 83 0.5 2.0 1.2 2.3 99 chr2R 19359052 intron CG11961 + chr2R 19359102 intron CG11961 + chr2R 19359151 intron CG11961 + chr2R_5_19355001 chr2R_19355001 RAL-227 509 chr2R 19774022 19774044 chr2R 19774128 19774156 4 110 2.0 1.5 1.8 1.4 134 chr2R 19774022 intergenic not near genes chr2R 19774089 intergenic not near genes chr2R 19774156 intergenic not near genes chr2R_4_19770001 chr2R_19770001 RAL-227 510 chr2R 19776597 19776626 chr2R 19779915 19779949 jockey 5 3322 3.0 4.0 3.5 1.1 3352 chr2R 19776597 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-227 511 chr2R 19909476 19909506 chr2R 19909554 19909585 7 79 3.5 1.5 2.5 2.0 109 chr2R 19909476 intergenic CR44573 - chr2R 19909530 intergenic CR44573 - chr2R 19909585 intergenic CR44573 - chr2R_7_19905001 chr2R_19905001 RAL-227 512 chr2R 19943272 19943290 chr2R 19943382 19943400 8 110 3.0 2.5 2.8 2.1 128 chr2R 19943272 intergenic not near genes chr2R 19943336 intergenic not near genes chr2R 19943400 intergenic not near genes chr2R_8_19940001 chr2R_19940001 RAL-227 513 chr2R 19957431 19957463 chr2R 19962633 19962659 copia 5 5201 2.5 1.5 2.0 1.7 5228 chr2R 19957431 intergenic CG44623 + chr2R 19960045 intergenic not near genes chr2R 19962659 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-227 514 chr2R 20018562 20018587 chr2R 20018745 20018773 15 185 2.0 2.0 2.0 5.0 211 chr2R 20018562 intergenic not near genes chr2R 20018668 intergenic not near genes chr2R 20018773 intergenic not near genes chr2R_15_20015001 chr2R_20015001 RAL-227 515 chr2R 20125736 20125743 chr2R 20125812 20125816 5 75 0.5 3.0 1.8 1.8 80 chr2R 20125736 intergenic not near genes chr2R 20125776 intergenic not near genes chr2R 20125816 intergenic not near genes chr2R_5_20125001 chr2R_20125001 RAL-227 516 chr2R 20338758 20338783 chr2R 20338838 20338863 5 80 0.0 0.0 0.0 5.0 105 chr2R 20338758 intergenic not near genes chr2R 20338810 intergenic not near genes chr2R 20338863 intergenic not near genes chr2R_5_20335001 chr2R_20335001 RAL-227 517 chr2R 20382335 20382345 chr2R 20382420 20382429 7 83 4.5 1.0 2.8 1.8 94 chr2R 20382335 intergenic not near genes chr2R 20382382 intergenic not near genes chr2R 20382429 intergenic not near genes chr2R_7_20380001 chr2R_20380001 RAL-227 518 chr2R 20395022 20395055 chr2R 20395194 20395231 4 170 3.0 0.0 1.5 1.6 209 chr2R 20395022 intergenic not near genes chr2R 20395126 intergenic not near genes chr2R 20395231 intergenic not near genes chr2R_4_20395001 chr2R_20395001 RAL-227 519 chr2R 20600417 20600453 chr2R 20600509 20600544 9 90 2.5 1.5 2.0 3.0 127 chr2R 20600417 intron bl + chr2R 20600480 intron bl + chr2R 20600544 intron bl + chr2R_9_20600001 chr2R_20600001 RAL-227 520 chr2R 20630370 20630389 chr2R 20630508 20630527 7 137 4.5 3.5 4.0 1.4 157 chr2R 20630370 intron Rcd6 - chr2R 20630448 intron Rcd6 - chr2R 20630527 intron Rcd6 - chr2R_7_20630001 chr2R_20630001 RAL-227 521 chr2R 20702672 20702695 chr2R 20702748 20702766 5 75 5.0 2.0 3.5 1.1 94 chr2R 20702672 intron dpr + chr2R 20702719 intron dpr + chr2R 20702766 intron dpr + chr2R_5_20700001 chr2R_20700001 RAL-227 522 chr2R 20783312 20783332 chr2R 20788084 20788104 F-element 4 4772 1.5 2.5 2.0 1.3 4792 chr2R 20783312 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788104 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-227 523 chr2R 20962905 20962937 chr2R 20963003 20963035 7 97 1.0 2.0 1.5 2.8 130 chr2R 20962905 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963035 intergenic not near genes chr2R_7_20960001 chr2R_20960001 RAL-227 524 chr2R 20967033 20967055 chr2R 20967110 20967132 4 77 4.0 0.0 2.0 1.3 99 chr2R 20967033 intergenic not near genes chr2R 20967082 intergenic not near genes chr2R 20967132 intergenic not near genes chr2R_4_20965001 chr2R_20965001 RAL-227 525 chr2R 21110799 21110823 chr2R 21110881 21110916 12 92 3.0 2.0 2.5 3.4 117 chr2R 21110799 intron ktub + chr2R 21110858 intron ktub + chr2R 21110916 intron ktub + chr2R_12_21110001 chr2R_21110001 RAL-227 526 chr2R 21141118 21141143 chr2R 21141214 21141239 7 96 0.0 2.5 1.2 3.2 121 chr2R 21141118 intron Magi - chr2R 21141178 intron Magi - chr2R 21141239 intron Magi - chr2R_7_21140001 chr2R_21140001 RAL-227 527 chr2R 21200007 21200036 chr2R 21200089 21200118 11 82 2.5 0.5 1.5 4.4 111 chr2R 21200007 intergenic CG44245 +,Glycogenin + chr2R 21200062 intergenic CG44245 +,Glycogenin + chr2R 21200118 intergenic CG44245 +,Glycogenin + chr2R_11_21200001 chr2R_21200001 RAL-227 528 chr2R 21660885 21660908 chr2R 21660978 21661001 8 93 1.5 2.5 2.0 2.7 116 chr2R 21660885 intergenic pirk - chr2R 21660943 intergenic pirk - chr2R 21661001 3` UTR pirk - chr2R_8_21660001 chr2R_21660001 RAL-227 529 chr2R 21753082 21753114 chr2R 21753567 21753599 roo 7 485 3.5 1.5 2.5 2.0 517 chr2R 21753082 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753599 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-227 530 chr2R 21906271 21906302 chr2R 21906372 21906403 5 100 2.0 4.5 3.2 1.2 132 chr2R 21906271 intron Fili + chr2R 21906337 intron Fili + chr2R 21906403 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-227 531 chr2R 21946768 21946802 chr2R 21946864 21946898 12 96 1.0 0.0 0.5 8.0 130 chr2R 21946768 intergenic not near genes chr2R 21946833 intergenic not near genes chr2R 21946898 intergenic not near genes chr2R_12_21945001 chr2R_21945001 RAL-227 532 chr2R 22003087 22003116 chr2R 22003173 22003202 7 86 4.0 0.0 2.0 2.3 115 chr2R 22003087 intron CG34370 - chr2R 22003144 intron CG34370 - chr2R 22003202 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-227 533 chr2R 22009785 22009805 chr2R 22009861 22009880 5 76 1.0 2.0 1.5 2.0 95 chr2R 22009785 intron CG34370 - chr2R 22009832 intron CG34370 - chr2R 22009880 intron CG34370 - chr2R_5_22005001 chr2R_22005001 RAL-227 534 chr2R 22012992 22013009 chr2R 22013085 22013102 5 93 1.5 1.0 1.2 2.3 110 chr2R 22012992 intron CG34370 - chr2R 22013047 intron CG34370 - chr2R 22013102 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-227 535 chr2R 22029479 22029499 chr2R 22029617 22029637 5 138 0.0 1.5 0.8 2.8 158 chr2R 22029479 intron CG34370 - chr2R 22029558 intron CG34370 - chr2R 22029637 intron CG34370 - chr2R_5_22025001 chr2R_22025001 RAL-227 536 chr2R 22185674 22185699 chr2R 22185773 22185797 8 98 0.0 0.0 0.0 8.0 123 chr2R 22185674 3` UTR MED16 + chr2R 22185736 3` UTR MED16 + chr2R 22185797 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-227 537 chr2R 22208672 22208695 chr2R 22208823 22208846 5 149 2.5 4.5 3.5 1.1 174 chr2R 22208672 3` UTR CG3264 - chr2R 22208759 3` UTR CG3264 - chr2R 22208846 3` UTR CG3264 - chr2R_5_22205001 chr2R_22205001 RAL-227 538 chr2R 22252399 22252429 chr2R 22252482 22252512 8 82 2.0 1.5 1.8 2.9 113 chr2R 22252399 intron dve + chr2R 22252456 intron dve + chr2R 22252512 intron dve + chr2R_8_22250001 chr2R_22250001 RAL-227 539 chr2R 22290084 22290105 chr2R 22290168 22290189 5 84 2.5 3.0 2.8 1.3 105 chr2R 22290084 intergenic not near genes chr2R 22290136 intergenic not near genes chr2R 22290189 intergenic not near genes chr2R_5_22290001 chr2R_22290001 RAL-227 540 chr2R 22349696 22349722 chr2R 22351472 22351500 jockey 4 1780 2.5 1.5 2.0 1.3 1804 chr2R 22349696 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351500 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-227 541 chr2R 22380372 22380391 chr2R 22380463 22380482 5 91 1.0 0.5 0.8 2.8 110 chr2R 22380372 intron wrapper + chr2R 22380427 intron wrapper + chr2R 22380482 intron wrapper + chr2R_5_22380001 chr2R_22380001 RAL-227 542 chr2R 22460388 22460406 chr2R 22460467 22460485 5 79 1.0 4.0 2.5 1.4 97 chr2R 22460388 intron CG10384 + chr2R 22460436 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_5_22460001 chr2R_22460001 RAL-227 543 chr2R 22499861 22499881 chr2R 22499937 22499957 5 76 0.0 3.5 1.8 1.8 96 chr2R 22499861 intron px - chr2R 22499909 intron px - chr2R 22499957 intron px - chr2R_5_22495001 chr2R_22495001 RAL-227 544 chr2R 22575660 22575687 chr2R 22575738 22575766 10 78 1.5 2.5 2.0 3.3 106 chr2R 22575660 intron dnr1 - chr2R 22575713 intron dnr1 - chr2R 22575766 intron dnr1 - chr2R_10_22575001 chr2R_22575001 RAL-227 545 chr2R 22679752 22679785 chr2R 22679827 22679846 5 68 1.0 0.5 0.8 2.8 94 chr2R 22679752 intergenic not near genes chr2R 22679799 intergenic not near genes chr2R 22679846 intergenic not near genes chr2R_5_22675001 chr2R_22675001 RAL-227 546 chr2R 22774962 22774995 chr2R 22775379 22775414 jockey 8 417 2.5 1.0 1.8 2.9 452 chr2R 22774962 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775414 intron CG42260 - chr2R_8_22775001 chr2R_22775001 RAL-227 547 chr2R 22781967 22781981 chr2R 22782153 22782168 4 187 2.5 2.5 2.5 1.1 201 chr2R 22781967 intron CG42260 - chr2R 22782068 intron CG42260 - chr2R 22782168 intron CG42260 - chr2R_4_22780001 chr2R_22780001 RAL-227 548 chr2R 22785737 22785755 chr2R 22785815 22785833 5 78 1.0 1.0 1.0 2.5 96 chr2R 22785737 intron CG42260 - chr2R 22785785 intron CG42260 - chr2R 22785833 intron CG42260 - chr2R_5_22785001 chr2R_22785001 RAL-227 549 chr2R 22843020 22843046 chr2R 22844982 22845008 flea 5 1962 1.0 2.5 1.8 1.8 1988 chr2R 22843020 intergenic CG9826 + chr2R 22844014 intergenic not near genes chr2R 22845008 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-227 550 chr2R 22868266 22868287 chr2R 22868376 22868398 7 112 0.5 5.5 3.0 1.8 132 chr2R 22868266 5` UTR fd59A + chr2R 22868332 5` UTR fd59A + chr2R 22868398 5` UTR fd59A + chr2R_7_22865001 chr2R_22865001 RAL-227 551 chr2R 22887308 22887313 chr2R 22887535 22887540 4 227 6.5 5.5 6.0 0.6 232 chr2R 22887308 intron asrij + chr2R 22887424 exon asrij + chr2R 22887540 3` UTR asrij + chr2R_4_22885001 chr2R_22885001 RAL-227 552 chr2R 22941819 22941839 chr2R 22941898 22941918 6 78 0.0 1.0 0.5 4.0 99 chr2R 22941819 intergenic CG42694 + chr2R 22941868 intergenic CG42694 + chr2R 22941918 5` UTR CG42694 + chr2R_6_22940001 chr2R_22940001 RAL-227 553 chr2R 22968140 22968161 chr2R 22968229 22968250 4 89 1.0 1.5 1.2 1.8 110 chr2R 22968140 intergenic not near genes chr2R 22968195 intergenic not near genes chr2R 22968250 intergenic not near genes chr2R_4_22965001 chr2R_22965001 RAL-227 554 chr2R 23053995 23054029 chr2R 23054073 23054107 10 77 1.0 2.0 1.5 4.0 112 chr2R 23053995 intergenic not near genes chr2R 23054051 intergenic not near genes chr2R 23054107 intergenic not near genes chr2R_10_23050001 chr2R_23050001 RAL-227 555 chr2R 23188562 23188577 chr2R 23188640 23188655 4 78 1.5 1.5 1.5 1.6 93 chr2R 23188562 intron CG34371 - chr2R 23188608 intron CG34371 - chr2R 23188655 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-227 556 chr2R 23225708 23225719 chr2R 23226346 23226362 7 642 2.0 3.0 2.5 2.0 654 chr2R 23225708 intergenic not near genes chr2R 23226035 intergenic not near genes chr2R 23226362 intergenic not near genes chr2R_7_23225001 chr2R_23225001 RAL-227 557 chr2R 23265907 23265940 chr2R 23266355 23266357 7 440 1.5 1.0 1.2 3.2 450 chr2R 23265907 intergenic CG12782 - chr2R 23266132 intergenic not near genes chr2R 23266357 intergenic not near genes chr2R_7_23265001 chr2R_23265001 RAL-227 558 chr2R 23437230 23437247 chr2R 23437307 23437317 7 73 0.5 5.5 3.0 1.8 87 chr2R 23437230 intergenic not near genes chr2R 23437274 intergenic not near genes chr2R 23437317 intergenic not near genes chr2R_7_23435001 chr2R_23435001 RAL-227 559 chr2R 23452655 23452679 chr2R 23453654 23453678 6 999 0.5 1.5 1.0 3.0 1023 chr2R 23452655 intron CG43795 + chr2R 23453166 intron CG43795 + chr2R 23453678 intron CG43795 + chr2R_6_23450001 chr2R_23450001 RAL-227 560 chr2R 23454632 23454651 chr2R 23454768 23454787 8 135 3.0 3.0 3.0 2.0 155 chr2R 23454632 intron CG43795 + chr2R 23454710 intron CG43795 + chr2R 23454787 intron CG43795 + chr2R_8_23450001 chr2R_23450001 RAL-227 561 chr2R 23784474 23784505 chr2R 23784552 23784583 5 78 1.5 2.5 2.0 1.7 109 chr2R 23784474 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784583 intron CG9850 - chr2R_5_23780001 chr2R_23780001 RAL-227 562 chr2R 23914322 23914331 chr2R 23921936 23921955 412 5 7619 2.5 3.5 3.0 1.2 7633 chr2R 23914322 exon kcc + chr2R 23918138 intron kcc + chr2R 23921955 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-227 563 chr2R 23986527 23986547 chr2R 23986602 23986627 5 79 1.5 5.0 3.2 1.2 100 chr2R 23986527 intron Phm - chr2R 23986577 intron Phm - chr2R 23986627 intron,5` UTR Phm -,CG30178 + chr2R_5_23985001 chr2R_23985001 RAL-227 564 chr2R 23994694 23994720 chr2R 23994771 23994797 11 73 2.5 3.5 3.0 2.8 103 chr2R 23994694 5` UTR CG3860 - chr2R 23994746 intron CG3860 - chr2R 23994797 intron CG3860 - chr2R_11_23990001 chr2R_23990001 RAL-227 565 chr2R 24031388 24031410 chr2R 24031471 24031494 9 84 0.5 3.0 1.8 3.2 106 chr2R 24031388 5` UTR CG30172 - chr2R 24031441 intergenic CG30172 -,Chi - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-227 566 chr2R 24045226 24045258 chr2R 24045310 24045328 8 82 4.5 1.5 3.0 2.0 102 chr2R 24045226 intron tsr - chr2R 24045277 intron tsr - chr2R 24045328 intron tsr - chr2R_8_24045001 chr2R_24045001 RAL-227 567 chr2R 24060523 24060729 chr2R 24060676 24060843 8 125 10.5 11.5 11.0 0.7 320 chr2R 24060523 5` UTR RpL12 + chr2R 24060683 exon RpL12 + chr2R 24060843 exon RpL12 + chr2R_8_24060001 chr2R_24060001 RAL-227 568 chr2R 24060942 24060969 chr2R 24061151 24061169 6 207 7.0 13.5 10.2 0.5 227 chr2R 24060942 exon RpL12 + chr2R 24061056 intron RpL12 + chr2R 24061169 exon RpL12 + chr2R_6_24060001 chr2R_24060001 RAL-227 569 chr2R 24177246 24177268 chr2R 24184731 24184753 412 6 7484 2.5 5.0 3.8 1.2 7507 chr2R 24177246 3` UTR Nop60B + chr2R 24181000 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_6_24180001 chr2R_24180001 RAL-227 570 chr2R 24278322 24278361 chr2R 24278404 24278419 15 78 1.0 2.0 1.5 6.0 97 chr2R 24278322 intron nvy + chr2R 24278370 intron nvy + chr2R 24278419 intron nvy + chr2R_15_24275001 chr2R_24275001 RAL-227 571 chr2R 24353427 24353460 chr2R 24361789 24361822 roo 9 8360 3.0 2.0 2.5 2.6 8395 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-227 572 chr2R 24483643 24483670 chr2R 24483722 24483749 10 78 2.5 2.5 2.5 2.9 106 chr2R 24483643 intron CG13579 + chr2R 24483696 intron CG13579 + chr2R 24483749 intron CG13579 + chr2R_10_24480001 chr2R_24480001 RAL-227 573 chr2R 24647589 24647610 chr2R 24655144 24655159 412 6 7552 2.0 4.5 3.2 1.4 7570 chr2R 24647589 intergenic not near genes chr2R 24651374 intergenic not near genes chr2R 24655159 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-227 574 chr2R 24727883 24727914 chr2R 24735390 24735421 mdg1 10 7507 0.5 1.5 1.0 5.0 7538 chr2R 24727883 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735421 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-227 575 chr2R 24763620 24763640 chr2R 24765596 24765597 G2 4 1968 3.0 1.5 2.2 1.2 1977 chr2R 24763620 exon CG3894 + chr2R 24764608 intron CG3894 + chr2R 24765597 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-227 576 chr2R 24798401 24798431 chr2R 24798734 24798764 10 332 1.0 1.5 1.2 4.5 363 chr2R 24798401 intron CG12849 + chr2R 24798582 exon CG12849 + chr2R 24798764 intergenic CG3611 +,CG12849 + chr2R_10_24795001 chr2R_24795001 RAL-227 577 chr2R 24859846 24859864 chr2R 24859932 24859949 4 85 2.5 2.5 2.5 1.1 103 chr2R 24859846 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859949 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-227 578 chr2R 24884051 24884074 chr2R 24884133 24884156 5 82 1.5 1.0 1.2 2.3 105 chr2R 24884051 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884156 intron NKAIN + chr2R_5_24880001 chr2R_24880001 RAL-227 579 chr2R 25014543 25014576 chr2R 25014619 25014652 10 75 1.5 2.5 2.0 3.3 109 chr2R 25014543 intron uzip + chr2R 25014598 intron uzip + chr2R 25014652 intron uzip + chr2R_10_25010001 chr2R_25010001 RAL-227 580 chr2R 25018345 25018376 chr2R 25018442 25018477 5 100 2.0 3.5 2.8 1.3 132 chr2R 25018345 intron uzip + chr2R 25018411 intron uzip + chr2R 25018477 intron uzip + chr2R_5_25015001 chr2R_25015001 RAL-227 581 chr2R 25022640 25022672 chr2R 25022724 25022756 10 84 0.5 1.0 0.8 5.6 116 chr2R 25022640 intron uzip + chr2R 25022698 intron uzip + chr2R 25022756 intron uzip + chr2R_10_25020001 chr2R_25020001 RAL-227 582 chr2R 25076641 25076665 chr2R 25076736 25076760 7 94 2.0 2.0 2.0 2.3 119 chr2R 25076641 intron gol - chr2R 25076700 intron gol - chr2R 25076760 intron gol - chr2R_7_25075001 chr2R_25075001 RAL-227 583 chr2R 25081608 25081637 chr2R 25082703 25082733 9 1094 2.5 3.0 2.8 2.4 1125 chr2R 25081608 intron gol - chr2R 25082170 intron gol - chr2R 25082733 intron gol - chr2R_9_25080001 chr2R_25080001 RAL-227 584 chr3L 68984 69013 chr3L 69068 69100 10 87 1.0 0.5 0.8 5.6 116 chr3L 68984 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69100 intergenic CR44510 +,Lsp1gamma + chr3L_10_65001 chr3L_65001 RAL-227 585 chr3L 110211 110242 chr3L 119378 119409 roo 6 9167 1.0 5.0 3.0 1.5 9198 chr3L 110211 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_6_110001 chr3L_110001 RAL-227 586 chr3L 339442 339470 chr3L 339525 339553 8 82 0.5 2.0 1.2 3.6 111 chr3L 339442 intron,intron Ptpmeg +,mthl10 - chr3L 339498 intron,intron Ptpmeg +,mthl10 - chr3L 339553 intron,intron Ptpmeg +,mthl10 - chr3L_8_335001 chr3L_335001 RAL-227 587 chr3L 390955 390979 chr3L 391061 391083 11 105 2.0 2.5 2.2 3.4 128 chr3L 390955 intron trh - chr3L 391019 intron trh - chr3L 391083 intron trh - chr3L_11_390001 chr3L_390001 RAL-227 588 chr3L 402381 402407 chr3L 402459 402485 6 78 0.0 2.0 1.0 3.0 104 chr3L 402381 intergenic not near genes chr3L 402433 intergenic not near genes chr3L 402485 intergenic not near genes chr3L_6_400001 chr3L_400001 RAL-227 589 chr3L 402689 402703 chr3L 409742 409753 297 4 7052 6.5 3.5 5.0 0.7 7064 chr3L 402689 intergenic not near genes chr3L 406221 intergenic not near genes chr3L 409753 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-227 590 chr3L 470921 470951 chr3L 471148 471178 8 225 1.5 2.5 2.0 2.7 257 chr3L 470921 intron klar - chr3L 471050 intron klar - chr3L 471178 intron klar - chr3L_8_470001 chr3L_470001 RAL-227 591 chr3L 659433 659443 chr3L 659510 659520 5 77 0.0 1.5 0.8 2.8 87 chr3L 659433 intergenic not near genes chr3L 659476 intergenic not near genes chr3L 659520 intergenic not near genes chr3L_5_655001 chr3L_655001 RAL-227 592 chr3L 705898 705935 chr3L 705994 706031 13 96 2.0 4.0 3.0 3.2 133 chr3L 705898 intergenic CG13895 -,CR44514 + chr3L 705964 3` UTR CG13895 - chr3L 706031 3` UTR CG13895 - chr3L_13_705001 chr3L_705001 RAL-227 593 chr3L 770051 770080 chr3L 770130 770159 4 79 2.0 2.0 2.0 1.3 108 chr3L 770051 intergenic not near genes chr3L 770105 intergenic not near genes chr3L 770159 intergenic not near genes chr3L_4_770001 chr3L_770001 RAL-227 594 chr3L 789913 789943 chr3L 790398 790427 roo 8 484 2.5 3.0 2.8 2.1 514 chr3L 789913 intergenic not near genes chr3L 790170 intergenic not near genes chr3L 790427 intergenic not near genes chr3L_8_790001 chr3L_790001 RAL-227 595 chr3L 925177 925209 chr3L 932603 932635 mdg1 8 7426 2.5 3.5 3.0 2.0 7458 chr3L 925177 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-227 596 chr3L 939778 939800 chr3L 940899 940921 jockey 9 1121 1.5 5.5 3.5 2.0 1143 chr3L 939778 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-227 597 chr3L 1010997 1011014 chr3L 1011078 1011095 5 81 4.0 5.5 4.8 0.9 98 chr3L 1010997 intron trio - chr3L 1011046 intron trio - chr3L 1011095 intron trio - chr3L_5_1010001 chr3L_1010001 RAL-227 598 chr3L 1040550 1040575 chr3L 1040634 1040659 6 84 2.0 0.5 1.2 2.7 109 chr3L 1040550 intron bab1 - chr3L 1040604 intron bab1 - chr3L 1040659 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-227 599 chr3L 1047350 1047381 chr3L 1055162 1055189 412 5 7806 0.5 2.5 1.5 2.0 7839 chr3L 1047350 intron bab1 - chr3L 1051270 intron bab1 - chr3L 1055189 intron bab1 - chr3L_5_1050001 chr3L_1050001 RAL-227 600 chr3L 1219595 1219625 chr3L 1227328 1227358 412 8 7732 0.5 2.5 1.5 3.2 7763 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227358 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-227 601 chr3L 1268154 1268172 chr3L 1268341 1268359 5 186 3.5 0.0 1.8 1.8 205 chr3L 1268154 intron CG9134 + chr3L 1268256 intron CG9134 + chr3L 1268359 intron CG9134 + chr3L_5_1265001 chr3L_1265001 RAL-227 602 chr3L 1347158 1347190 chr3L 1347243 1347275 7 85 0.5 2.0 1.2 3.2 117 chr3L 1347158 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347275 intron Ptp61F - chr3L_7_1345001 chr3L_1345001 RAL-227 603 chr3L 1396739 1396758 chr3L 1396823 1396842 5 84 4.0 5.5 4.8 0.9 103 chr3L 1396739 intron Ptp61F - chr3L 1396790 intron Ptp61F - chr3L 1396842 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-227 604 chr3L 1481007 1481028 chr3L 1481071 1481096 5 74 2.0 1.0 1.5 2.0 89 chr3L 1481007 intron stet - chr3L 1481052 intron stet - chr3L 1481096 intron stet - chr3L_5_1480001 chr3L_1480001 RAL-227 605 chr3L 1506001 1506033 chr3L 1513595 1513630 17.6 10 7596 2.5 3.5 3.0 2.5 7629 chr3L 1506001 intron,intron Psa +,cue - chr3L 1509816 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_10_1505001 chr3L_1505001 RAL-227 606 chr3L 1693526 1693534 chr3L 1693615 1693623 4 89 0.0 1.5 0.8 2.2 97 chr3L 1693526 intron CG7991 + chr3L 1693574 intron CG7991 + chr3L 1693623 intron CG7991 + chr3L_4_1690001 chr3L_1690001 RAL-227 607 chr3L 1726610 1726647 chr3L 1726690 1726727 6 79 2.5 2.5 2.5 1.7 117 chr3L 1726610 intron drpr - chr3L 1726668 intron drpr - chr3L 1726727 intron drpr - chr3L_6_1725001 chr3L_1725001 RAL-227 608 chr3L 1740864 1740884 chr3L 1741109 1741129 pogo 5 244 0.5 4.5 2.5 1.4 265 chr3L 1740864 intron Gk + chr3L 1740996 intron Gk + chr3L 1741129 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-227 609 chr3L 2108257 2108275 chr3L 2113459 2113476 copia 4 5203 0.0 2.0 1.0 2.0 5219 chr3L 2108257 intron sls - chr3L 2110866 intron sls - chr3L 2113476 intron sls - chr3L_4_2110001 chr3L_2110001 RAL-227 610 chr3L 2168787 2168808 chr3L 2168877 2168899 6 90 4.0 4.0 4.0 1.2 112 chr3L 2168787 intron CG15879 - chr3L 2168843 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-227 611 chr3L 2308009 2308035 chr3L 2308113 2308124 4 101 2.0 3.0 2.5 1.1 115 chr3L 2308009 intergenic not near genes chr3L 2308066 intergenic not near genes chr3L 2308124 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-227 612 chr3L 2331590 2331613 chr3L 2331663 2331690 5 75 1.0 1.5 1.2 2.3 100 chr3L 2331590 intron MsR1 + chr3L 2331640 intron MsR1 + chr3L 2331690 intron MsR1 + chr3L_5_2330001 chr3L_2330001 RAL-227 613 chr3L 2340105 2340135 chr3L 2340192 2340192 4 80 3.0 2.5 2.8 1.1 87 chr3L 2340105 intron MsR1 + chr3L 2340148 intron MsR1 + chr3L 2340192 intron MsR1 + chr3L_4_2340001 chr3L_2340001 RAL-227 614 chr3L 2447506 2447537 chr3L 2456662 2456692 roo 6 9154 1.5 2.0 1.8 2.1 9186 chr3L 2447506 intron CG45186 + chr3L 2452099 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-227 615 chr3L 2515420 2515428 chr3L 2515502 2515510 4 82 0.5 4.5 2.5 1.1 90 chr3L 2515420 intron Spn - chr3L 2515465 intron Spn - chr3L 2515510 intron Spn - chr3L_4_2515001 chr3L_2515001 RAL-227 616 chr3L 2561526 2561555 chr3L 2561603 2561631 6 77 0.5 4.0 2.2 1.9 105 chr3L 2561526 intron msn - chr3L 2561578 intron msn - chr3L 2561631 intron msn - chr3L_6_2560001 chr3L_2560001 RAL-227 617 chr3L 2644548 2644575 chr3L 2644626 2644653 6 78 1.5 3.0 2.2 1.9 105 chr3L 2644548 intergenic not near genes chr3L 2644600 intergenic not near genes chr3L 2644653 intergenic not near genes chr3L_6_2640001 chr3L_2640001 RAL-227 618 chr3L 2676230 2676239 chr3L 2676316 2676319 4 84 2.0 1.0 1.5 1.6 89 chr3L 2676230 intron Fife - chr3L 2676274 intron Fife - chr3L 2676319 intron Fife - chr3L_4_2675001 chr3L_2675001 RAL-227 619 chr3L 2683954 2683979 chr3L 2684030 2684055 4 75 3.5 2.0 2.8 1.1 101 chr3L 2683954 intron Fife - chr3L 2684004 intron Fife - chr3L 2684055 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-227 620 chr3L 2740230 2740251 chr3L 2740338 2740360 7 109 3.5 0.5 2.0 2.3 130 chr3L 2740230 intron Mrtf - chr3L 2740295 intron Mrtf - chr3L 2740360 intron Mrtf - chr3L_7_2740001 chr3L_2740001 RAL-227 621 chr3L 2812353 2812366 chr3L 2812435 2812448 5 82 1.5 2.0 1.8 1.8 95 chr3L 2812353 intron CG43444 - chr3L 2812400 intron CG43444 - chr3L 2812448 intron CG43444 - chr3L_5_2810001 chr3L_2810001 RAL-227 622 chr3L 2826555 2826587 chr3L 2826652 2826684 5 97 0.5 1.0 0.8 2.8 129 chr3L 2826555 intron CG43444 - chr3L 2826620 intron CG43444 - chr3L 2826684 intron CG43444 - chr3L_5_2825001 chr3L_2825001 RAL-227 623 chr3L 2899578 2899603 chr3L 2899691 2899714 7 113 4.5 2.0 3.2 1.7 136 chr3L 2899578 intron Shab + chr3L 2899646 intron Shab + chr3L 2899714 intron Shab + chr3L_7_2895001 chr3L_2895001 RAL-227 624 chr3L 2906211 2906242 chr3L 2906296 2906327 5 85 1.5 0.0 0.8 2.8 116 chr3L 2906211 intron Shab + chr3L 2906269 intron Shab + chr3L 2906327 intron Shab + chr3L_5_2905001 chr3L_2905001 RAL-227 625 chr3L 2987731 2987743 chr3L 2987993 2988005 5 262 3.5 3.5 3.5 1.1 274 chr3L 2987731 intergenic not near genes chr3L 2987868 intergenic not near genes chr3L 2988005 intergenic not near genes chr3L_5_2985001 chr3L_2985001 RAL-227 626 chr3L 3269119 3269124 chr3L 3269209 3269215 4 91 0.0 1.5 0.8 2.2 96 chr3L 3269119 intergenic CG34265 + chr3L 3269167 intergenic CG34265 + chr3L 3269215 intergenic CG34265 + chr3L_4_3265001 chr3L_3265001 RAL-227 627 chr3L 3281439 3281472 chr3L 3281933 3281968 Doc 10 494 3.5 2.5 3.0 2.5 529 chr3L 3281439 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281968 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-227 628 chr3L 3317538 3317565 chr3L 3317617 3317644 6 79 1.5 1.0 1.2 2.7 106 chr3L 3317538 intergenic Drsl5 +,PIG-C - chr3L 3317591 intergenic PIG-C -,Drsl5 + chr3L 3317644 intergenic PIG-C -,Drsl5 + chr3L_6_3315001 chr3L_3315001 RAL-227 629 chr3L 3487063 3487091 chr3L 3487141 3487168 9 78 1.5 4.0 2.8 2.4 105 chr3L 3487063 intron CG42324 + chr3L 3487116 intron CG42324 + chr3L 3487168 intron CG42324 + chr3L_9_3485001 chr3L_3485001 RAL-227 630 chr3L 3565938 3565971 chr3L 3566014 3566047 9 76 2.5 0.5 1.5 3.6 109 chr3L 3565938 intron Eip63E + chr3L 3565992 intron Eip63E + chr3L 3566047 intron Eip63E + chr3L_9_3565001 chr3L_3565001 RAL-227 631 chr3L 3566401 3566424 chr3L 3566484 3566507 6 83 1.0 2.0 1.5 2.4 106 chr3L 3566401 intron Eip63E + chr3L 3566454 intron Eip63E + chr3L 3566507 intron Eip63E + chr3L_6_3565001 chr3L_3565001 RAL-227 632 chr3L 3601303 3601329 chr3L 3606614 3606638 copia 7 5310 4.0 1.5 2.8 1.8 5335 chr3L 3601303 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606638 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-227 633 chr3L 3627242 3627259 chr3L 3627347 3627364 6 105 0.5 1.5 1.0 3.0 122 chr3L 3627242 intron dar1 + chr3L 3627303 intron dar1 + chr3L 3627364 intron dar1 + chr3L_6_3625001 chr3L_3625001 RAL-227 634 chr3L 3640749 3640776 chr3L 3640864 3640892 8 113 2.5 1.5 2.0 2.7 143 chr3L 3640749 intron dar1 + chr3L 3640820 intron dar1 + chr3L 3640892 intron dar1 + chr3L_8_3640001 chr3L_3640001 RAL-227 635 chr3L 3795594 3795623 chr3L 3795671 3795700 7 74 1.5 1.0 1.2 3.2 106 chr3L 3795594 intron CG32264 - chr3L 3795647 intron CG32264 - chr3L 3795700 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-227 636 chr3L 3833747 3833766 chr3L 3833988 3834007 pogo 4 241 2.0 1.0 1.5 1.6 260 chr3L 3833747 intron enc + chr3L 3833877 intron enc + chr3L 3834007 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-227 637 chr3L 4015732 4015766 chr3L 4015815 4015849 6 83 1.5 1.5 1.5 2.4 117 chr3L 4015732 intergenic not near genes chr3L 4015790 intergenic not near genes chr3L 4015849 intergenic not near genes chr3L_6_4015001 chr3L_4015001 RAL-227 638 chr3L 4337581 4337593 chr3L 4337685 4337689 4 103 4.0 4.0 4.0 0.8 108 chr3L 4337581 intron Cip4 - chr3L 4337635 intron Cip4 - chr3L 4337689 intron Cip4 - chr3L_4_4335001 chr3L_4335001 RAL-227 639 chr3L 4341330 4341332 chr3L 21448026 21448027 5 17106695 8.0 9.0 8.5 0.5 17106697 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-227 640 chr3L 4446222 4446244 chr3L 4446308 4446330 4 86 2.5 5.5 4.0 0.8 108 chr3L 4446222 3` UTR CR45739 - chr3L 4446276 3` UTR CR45739 - chr3L 4446330 3` UTR CR45739 - chr3L_4_4445001 chr3L_4445001 RAL-227 641 chr3L 4519419 4519449 chr3L 4519496 4519526 12 77 6.0 1.5 3.8 2.5 107 chr3L 4519419 intron Tie - chr3L 4519472 intron Tie - chr3L 4519526 intron Tie - chr3L_12_4515001 chr3L_4515001 RAL-227 642 chr3L 4607279 4607292 chr3L 4607370 4607383 6 90 0.0 3.0 1.5 2.4 104 chr3L 4607279 intron Src64B - chr3L 4607331 intron Src64B - chr3L 4607383 intron Src64B - chr3L_6_4605001 chr3L_4605001 RAL-227 643 chr3L 4676037 4676052 chr3L 4676118 4676133 4 81 0.5 0.0 0.2 3.3 96 chr3L 4676037 intron axo - chr3L 4676085 intron axo - chr3L 4676133 intron axo - chr3L_4_4675001 chr3L_4675001 RAL-227 644 chr3L 4748702 4748731 chr3L 4748793 4748822 6 90 0.5 2.0 1.2 2.7 120 chr3L 4748702 intron RhoGEF64C + chr3L 4748762 intron RhoGEF64C + chr3L 4748822 intron RhoGEF64C + chr3L_6_4745001 chr3L_4745001 RAL-227 645 chr3L 4784959 4784980 chr3L 4785168 4785188 4 208 1.0 0.0 0.5 2.7 229 chr3L 4784959 intron RhoGEF64C + chr3L 4785074 intron RhoGEF64C + chr3L 4785188 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-227 646 chr3L 4901130 4901153 chr3L 4907320 4907343 diver 5 6190 3.5 1.0 2.2 1.6 6213 chr3L 4901130 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-227 647 chr3L 4990746 4990778 chr3L 4990860 4990881 10 112 2.5 1.5 2.0 3.3 135 chr3L 4990746 intron Con - chr3L 4990814 intron Con - chr3L 4990881 intron Con - chr3L_10_4990001 chr3L_4990001 RAL-227 648 chr3L 5104495 5104505 chr3L 5124629 5124639 4 20134 2.0 0.0 1.0 2.0 20144 chr3L 5104495 intergenic not near genes chr3L 5114567 intergenic not near genes chr3L 5124639 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-227 649 chr3L 5493194 5493223 chr3L 5493340 5493369 8 144 1.5 0.5 1.0 4.0 175 chr3L 5493194 intergenic CR44520 - chr3L 5493282 intergenic CR44520 - chr3L 5493369 intergenic CR44520 - chr3L_8_5490001 chr3L_5490001 RAL-227 650 chr3L 5498420 5498431 chr3L 5498497 5498508 4 77 1.0 6.5 3.8 0.8 88 chr3L 5498420 exon blanks - chr3L 5498464 exon blanks - chr3L 5498508 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-227 651 chr3L 5727188 5727192 chr3L 5727648 5727665 4 467 0.5 1.5 1.0 2.0 477 chr3L 5727188 intron sif + chr3L 5727426 intron sif + chr3L 5727665 intron sif + chr3L_4_5725001 chr3L_5725001 RAL-227 652 chr3L 5747460 5747471 chr3L 5747545 5747556 4 85 0.5 0.5 0.5 2.7 96 chr3L 5747460 3` UTR sif + chr3L 5747508 3` UTR sif + chr3L 5747556 3` UTR sif + chr3L_4_5745001 chr3L_5745001 RAL-227 653 chr3L 5910035 5910062 chr3L 5910276 5910303 pogo 10 241 2.5 1.5 2.0 3.3 268 chr3L 5910035 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910303 intron CG13288 + chr3L_10_5910001 chr3L_5910001 RAL-227 654 chr3L 5926319 5926348 chr3L 5926509 5926531 BS 4 188 1.5 2.0 1.8 1.4 212 chr3L 5926319 intron Vap-33B + chr3L 5926425 intron Vap-33B + chr3L 5926531 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-227 655 chr3L 6001687 6001715 chr3L 6004387 6004415 jockey 7 2698 3.0 0.5 1.8 2.5 2728 chr3L 6001687 intron PVRAP + chr3L 6003051 intron PVRAP + chr3L 6004415 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-227 656 chr3L 6040368 6040388 chr3L 6042724 6042744 Doc 5 2356 2.5 2.5 2.5 1.4 2376 chr3L 6040368 intergenic Jon65Aiv + chr3L 6041556 intergenic not near genes chr3L 6042744 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-227 657 chr3L 6052664 6052666 chr3L 6052749 6052751 4 85 3.0 4.5 3.8 0.8 87 chr3L 6052664 exon Jon65Aii + chr3L 6052708 intron Jon65Aii + chr3L 6052751 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-227 658 chr3L 6103007 6103012 chr3L 6103111 6103116 5 104 1.0 8.5 4.8 0.9 109 chr3L 6103007 intron Ets65A + chr3L 6103062 intron Ets65A + chr3L 6103116 intron Ets65A + chr3L_5_6100001 chr3L_6100001 RAL-227 659 chr3L 6162354 6162375 chr3L 6162435 6162446 5 76 1.5 1.5 1.5 2.0 92 chr3L 6162354 intergenic CR45744 - chr3L 6162400 intergenic CR45744 - chr3L 6162446 intergenic CR45744 - chr3L_5_6160001 chr3L_6160001 RAL-227 660 chr3L 6220914 6220942 chr3L 6230066 6230094 roo 9 9152 3.0 4.5 3.8 1.9 9180 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230094 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-227 661 chr3L 6233323 6233338 chr3L 6233444 6233459 4 120 1.0 4.5 2.8 1.1 136 chr3L 6233323 5` UTR BG642312 - chr3L 6233391 intergenic BG642312 -,CG42714 - chr3L 6233459 intergenic CG42714 -,BG642312 - chr3L_4_6230001 chr3L_6230001 RAL-227 662 chr3L 6266389 6266400 chr3L 6266459 6266474 4 72 2.0 1.5 1.8 1.4 85 chr3L 6266389 intergenic not near genes chr3L 6266432 intergenic not near genes chr3L 6266474 intergenic not near genes chr3L_4_6265001 chr3L_6265001 RAL-227 663 chr3L 6267617 6267637 chr3L 6267700 6267721 6 84 1.5 4.5 3.0 1.5 104 chr3L 6267617 intergenic not near genes chr3L 6267669 intergenic not near genes chr3L 6267721 intergenic not near genes chr3L_6_6265001 chr3L_6265001 RAL-227 664 chr3L 6335008 6335038 chr3L 6335479 6335509 297 5 471 1.5 2.5 2.0 1.7 501 chr3L 6335008 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335509 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-227 665 chr3L 6353385 6353407 chr3L 6353465 6353484 5 73 1.0 3.0 2.0 1.7 99 chr3L 6353385 intergenic not near genes chr3L 6353434 intergenic not near genes chr3L 6353484 intergenic not near genes chr3L_5_6350001 chr3L_6350001 RAL-227 666 chr3L 6405656 6405681 chr3L 6432120 6432145 roo 5 26464 2.5 2.0 2.2 1.6 26489 chr3L 6405656 intron CG42747 + chr3L 6418900 intron CG42747 + chr3L 6432145 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-227 667 chr3L 6781133 6781139 chr3L 6783145 6783152 Doc 5 2013 3.0 0.0 1.5 2.0 2019 chr3L 6781133 intergenic not near genes chr3L 6782142 intergenic not near genes chr3L 6783152 intergenic not near genes chr3L_5_6780001 chr3L_6780001 RAL-227 668 chr3L 6855934 6855947 chr3L 6860718 6860731 Doc 4 4784 2.0 0.5 1.2 1.8 4797 chr3L 6855934 intergenic not near genes chr3L 6858332 intergenic not near genes chr3L 6860731 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-227 669 chr3L 6994894 6994915 chr3L 6995505 6995525 BS 4 611 0.0 3.0 1.5 1.6 631 chr3L 6994894 intergenic bin + chr3L 6995210 intergenic not near genes chr3L 6995525 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-227 670 chr3L 7033071 7033084 chr3L 7033151 7033182 5 90 3.0 3.5 3.2 1.2 111 chr3L 7033071 intron Mp + chr3L 7033126 intron Mp + chr3L 7033182 intron Mp + chr3L_5_7030001 chr3L_7030001 RAL-227 671 chr3L 7079603 7079639 chr3L 7079680 7079716 9 77 1.5 0.5 1.0 4.5 113 chr3L 7079603 intergenic not near genes chr3L 7079660 intergenic not near genes chr3L 7079716 intergenic not near genes chr3L_9_7075001 chr3L_7075001 RAL-227 672 chr3L 7285454 7285472 chr3L 7285530 7285550 4 77 1.0 1.0 1.0 2.0 96 chr3L 7285454 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285550 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-227 673 chr3L 7308196 7308220 chr3L 7308272 7308296 6 76 0.5 5.5 3.0 1.5 100 chr3L 7308196 intron unc-13-4A - chr3L 7308246 intron unc-13-4A - chr3L 7308296 intron unc-13-4A - chr3L_6_7305001 chr3L_7305001 RAL-227 674 chr3L 7318185 7318207 chr3L 7318280 7318302 5 95 4.5 2.5 3.5 1.1 117 chr3L 7318185 intergenic not near genes chr3L 7318244 intergenic not near genes chr3L 7318302 intergenic not near genes chr3L_5_7315001 chr3L_7315001 RAL-227 675 chr3L 7581621 7581656 chr3L 7581705 7581727 6 81 1.5 1.0 1.2 2.7 106 chr3L 7581621 intergenic not near genes chr3L 7581674 intergenic not near genes chr3L 7581727 intergenic not near genes chr3L_6_7580001 chr3L_7580001 RAL-227 676 chr3L 7591145 7591181 chr3L 7591236 7591248 7 84 0.5 4.0 2.2 2.2 103 chr3L 7591145 intergenic CG7716 - chr3L 7591196 intergenic CG7716 - chr3L 7591248 intergenic CG7716 - chr3L_7_7590001 chr3L_7590001 RAL-227 677 chr3L 7745212 7745236 chr3L 7745466 7745491 6 254 1.5 3.5 2.5 1.7 279 chr3L 7745212 intron CG32373 + chr3L 7745352 intron CG32373 + chr3L 7745491 intron CG32373 + chr3L_6_7745001 chr3L_7745001 RAL-227 678 chr3L 7749120 7749138 chr3L 7749248 7749266 5 128 1.5 0.5 1.0 2.5 146 chr3L 7749120 intron,3` UTR CG32373 +,CG13685 + chr3L 7749193 intron,3` UTR CG32373 +,CG13685 + chr3L 7749266 intron,3` UTR CG32373 +,CG13685 + chr3L_5_7745001 chr3L_7745001 RAL-227 679 chr3L 7760087 7760112 chr3L 7760163 7760188 4 76 0.5 1.5 1.0 2.0 101 chr3L 7760087 intergenic Hn + chr3L 7760138 intergenic Hn + chr3L 7760188 intergenic Hn + chr3L_4_7760001 chr3L_7760001 RAL-227 680 chr3L 7793711 7793744 chr3L 7800763 7800796 297 9 7052 1.0 2.0 1.5 3.6 7085 chr3L 7793711 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-227 681 chr3L 7882157 7882196 chr3L 7882248 7882286 6 91 1.5 0.5 1.0 3.0 129 chr3L 7882157 intron CG32365 + chr3L 7882222 intron CG32365 + chr3L 7882286 intron CG32365 + chr3L_6_7880001 chr3L_7880001 RAL-227 682 chr3L 7886518 7886545 chr3L 7889035 7889063 Stalker4 7 2518 0.5 1.0 0.8 3.9 2545 chr3L 7886518 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_7_7885001 chr3L_7885001 RAL-227 683 chr3L 7985362 7985395 chr3L 7987689 7987723 NOF 7 2328 2.5 1.5 2.0 2.3 2361 chr3L 7985362 intron nmo + chr3L 7986542 intron nmo + chr3L 7987723 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-227 684 chr3L 8062858 8062961 chr3L 8062937 8063097 6 116 2.0 1.5 1.8 2.1 239 chr3L 8062858 intergenic not near genes chr3L 8062978 intergenic not near genes chr3L 8063097 intergenic not near genes chr3L_6_8060001 chr3L_8060001 RAL-227 685 chr3L 8263770 8263790 chr3L 8263854 8263876 7 85 1.0 5.0 3.0 1.8 106 chr3L 8263770 intron Dscam4 + chr3L 8263823 intron Dscam4 + chr3L 8263876 intron Dscam4 + chr3L_7_8260001 chr3L_8260001 RAL-227 686 chr3L 8295790 8295817 chr3L 8295947 8295975 12 158 2.5 4.0 3.2 2.9 185 chr3L 8295790 intergenic CG7201 - chr3L 8295882 intergenic not near genes chr3L 8295975 intergenic not near genes chr3L_12_8295001 chr3L_8295001 RAL-227 687 chr3L 8498299 8498329 chr3L 8505765 8505796 blood 7 7466 0.0 1.0 0.5 4.7 7497 chr3L 8498299 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505796 intron CG43163 - chr3L_7_8500001 chr3L_8500001 RAL-227 688 chr3L 8540712 8540741 chr3L 8540789 8540817 5 77 3.0 1.5 2.2 1.6 105 chr3L 8540712 intergenic not near genes chr3L 8540764 intergenic not near genes chr3L 8540817 intergenic not near genes chr3L_5_8540001 chr3L_8540001 RAL-227 689 chr3L 8609080 8609104 chr3L 8609161 8609185 7 80 2.0 1.5 1.8 2.5 105 chr3L 8609080 intron CG6282 + chr3L 8609132 intron CG6282 + chr3L 8609185 intron CG6282 + chr3L_7_8605001 chr3L_8605001 RAL-227 690 chr3L 8619509 8619541 chr3L 8619598 8619630 7 89 0.0 2.0 1.0 3.5 121 chr3L 8619509 intergenic S-Lap1 +,S-Lap2 + chr3L 8619570 intergenic S-Lap1 +,S-Lap2 + chr3L 8619630 intergenic S-Lap1 +,S-Lap2 + chr3L_7_8615001 chr3L_8615001 RAL-227 691 chr3L 8791270 8791293 chr3L 8796690 8796713 I-element 5 5420 6.0 1.5 3.8 1.0 5443 chr3L 8791270 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796713 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-227 692 chr3L 8832409 8832428 chr3L 8832502 8832521 7 94 4.5 1.0 2.8 1.8 112 chr3L 8832409 intron dally + chr3L 8832465 intron dally + chr3L 8832521 intron dally + chr3L_7_8830001 chr3L_8830001 RAL-227 693 chr3L 8950557 8950581 chr3L 8950637 8950675 9 92 2.5 1.0 1.8 3.2 118 chr3L 8950557 intron,intron CG43783 -,orb2 - chr3L 8950616 intron,intron CG43783 -,orb2 - chr3L 8950675 intron,intron CG43783 -,orb2 - chr3L_9_8950001 chr3L_8950001 RAL-227 694 chr3L 9003964 9003978 chr3L 9004049 9004063 4 85 0.0 3.0 1.5 1.6 99 chr3L 9003964 intergenic not near genes chr3L 9004014 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-227 695 chr3L 9030431 9030452 chr3L 9030509 9030531 5 79 1.0 0.0 0.5 3.3 100 chr3L 9030431 intergenic not near genes chr3L 9030481 intergenic not near genes chr3L 9030531 intergenic not near genes chr3L_5_9030001 chr3L_9030001 RAL-227 696 chr3L 9076928 9076948 chr3L 9084487 9084508 412 9 7560 4.0 3.5 3.8 1.9 7580 chr3L 9076928 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084508 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-227 697 chr3L 9130565 9130581 chr3L 9134322 9134342 412 6 3758 1.0 2.0 1.5 2.4 3777 chr3L 9130565 intergenic bol - chr3L 9132454 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-227 698 chr3L 9164695 9164731 chr3L 9166162 9166198 hobo 7 1467 0.5 0.5 0.5 4.7 1503 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166198 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-227 699 chr3L 9183634 9183644 chr3L 9183710 9183712 4 76 1.0 1.5 1.2 1.8 78 chr3L 9183634 intergenic not near genes chr3L 9183673 intergenic not near genes chr3L 9183712 intergenic not near genes chr3L_4_9180001 chr3L_9180001 RAL-227 700 chr3L 9219244 9219267 chr3L 9219916 9219939 jockey 9 672 2.5 3.5 3.0 2.2 695 chr3L 9219244 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219939 intergenic not near genes chr3L_9_9215001 chr3L_9215001 RAL-227 701 chr3L 9270615 9270639 chr3L 9278370 9278394 roo 5 7755 2.0 0.0 1.0 2.5 7779 chr3L 9270615 intron GluRIB + chr3L 9274504 intron GluRIB + chr3L 9278394 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-227 702 chr3L 9307796 9307796 chr3L 22908066 22908067 4 13600270 11.5 10.5 11.0 0.3 13600271 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_4_16105001 chr3L_16105001 RAL-227 703 chr3L 9443508 9443537 chr3L 9445299 9445328 S-element 4 1791 3.5 0.0 1.8 1.4 1820 chr3L 9443508 intron CG33926 + chr3L 9444418 intron CG33926 + chr3L 9445328 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-227 704 chr3L 9571902 9571925 chr3L 9572250 9572273 jockey 5 348 3.5 3.0 3.2 1.2 371 chr3L 9571902 intron CG42673 + chr3L 9572088 intron CG42673 + chr3L 9572273 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-227 705 chr3L 9575907 9575938 chr3L 9580985 9581016 jockey 11 5078 4.5 2.5 3.5 2.4 5109 chr3L 9575907 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_11_9575001 chr3L_9575001 RAL-227 706 chr3L 9637852 9637882 chr3L 9637934 9637964 9 82 2.5 1.0 1.8 3.2 112 chr3L 9637852 intron fry - chr3L 9637908 intron fry - chr3L 9637964 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-227 707 chr3L 9732425 9732441 chr3L 9732503 9732519 7 78 2.5 3.0 2.8 1.8 94 chr3L 9732425 exon CG6749 - chr3L 9732472 intron CG6749 - chr3L 9732519 intron CG6749 - chr3L_7_9730001 chr3L_9730001 RAL-227 708 chr3L 9848514 9848545 chr3L 9848590 9848621 8 75 3.0 0.0 1.5 3.2 107 chr3L 9848514 intron RasGAP1 - chr3L 9848568 intron RasGAP1 - chr3L 9848621 intron RasGAP1 - chr3L_8_9845001 chr3L_9845001 RAL-227 709 chr3L 9918888 9918914 chr3L 9918980 9919009 5 94 1.5 4.0 2.8 1.3 121 chr3L 9918888 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919009 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-227 710 chr3L 9929678 9929695 chr3L 9938453 9938476 roo 5 8780 1.5 2.5 2.0 1.7 8798 chr3L 9929678 intron CG34356 + chr3L 9934077 intron CG34356 + chr3L 9938476 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-227 711 chr3L 9946520 9946545 chr3L 9946709 9946734 6 189 2.0 1.5 1.8 2.1 214 chr3L 9946520 intron CG34356 + chr3L 9946627 intron CG34356 + chr3L 9946734 intron CG34356 + chr3L_6_9945001 chr3L_9945001 RAL-227 712 chr3L 10077760 10077769 chr3L 10077840 10077848 4 80 0.5 0.0 0.2 3.3 88 chr3L 10077760 intron dpr6 + chr3L 10077804 intron dpr6 + chr3L 10077848 intron dpr6 + chr3L_4_10075001 chr3L_10075001 RAL-227 713 chr3L 10165663 10165672 chr3L 10165738 10165747 4 75 3.5 0.0 1.8 1.4 84 chr3L 10165663 intron dpr10 - chr3L 10165705 intron dpr10 - chr3L 10165747 intron dpr10 - chr3L_4_10165001 chr3L_10165001 RAL-227 714 chr3L 10214729 10214825 chr3L 10214816 10214927 7 97 0.0 0.0 0.0 7.0 198 chr3L 10214729 intergenic not near genes chr3L 10214828 intergenic not near genes chr3L 10214927 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-227 715 chr3L 10219431 10219457 chr3L 10219521 10219547 9 89 2.5 1.0 1.8 3.2 116 chr3L 10219431 exon CG32055 - chr3L 10219489 exon CG32055 - chr3L 10219547 intron CG32055 - chr3L_9_10215001 chr3L_10215001 RAL-227 716 chr3L 10308746 10308772 chr3L 10308819 10308848 10 76 0.5 1.5 1.0 5.0 102 chr3L 10308746 intergenic not near genes chr3L 10308797 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_10_10305001 chr3L_10305001 RAL-227 717 chr3L 10386391 10386417 chr3L 10386468 10386493 5 75 0.0 1.5 0.8 2.8 102 chr3L 10386391 intergenic CR45245 + chr3L 10386442 intergenic CR45245 + chr3L 10386493 5` UTR CR45245 + chr3L_5_10385001 chr3L_10385001 RAL-227 718 chr3L 10414949 10414966 chr3L 10417319 10417338 Doc 7 2371 2.5 1.5 2.0 2.3 2389 chr3L 10414949 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417338 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-227 719 chr3L 10417569 10417600 chr3L 10417646 10417677 6 77 3.0 2.5 2.8 1.6 108 chr3L 10417569 intergenic not near genes chr3L 10417623 intergenic not near genes chr3L 10417677 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-227 720 chr3L 10498929 10498945 chr3L 10499028 10499044 6 97 2.0 2.5 2.2 1.9 115 chr3L 10498929 intron A2bp1 + chr3L 10498986 intron A2bp1 + chr3L 10499044 intron A2bp1 + chr3L_6_10495001 chr3L_10495001 RAL-227 721 chr3L 10510255 10510282 chr3L 10510467 10510494 6 210 3.0 3.0 3.0 1.5 239 chr3L 10510255 intron A2bp1 + chr3L 10510374 intron A2bp1 + chr3L 10510494 intron A2bp1 + chr3L_6_10510001 chr3L_10510001 RAL-227 722 chr3L 10526639 10526652 chr3L 10526719 10526730 4 80 2.0 2.0 2.0 1.3 91 chr3L 10526639 intron A2bp1 + chr3L 10526684 intron A2bp1 + chr3L 10526730 intron A2bp1 + chr3L_4_10525001 chr3L_10525001 RAL-227 723 chr3L 10601209 10601224 chr3L 10601301 10601317 5 92 2.0 0.5 1.2 2.3 108 chr3L 10601209 intergenic not near genes chr3L 10601263 intergenic not near genes chr3L 10601317 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-227 724 chr3L 10658179 10658209 chr3L 10658306 10658336 7 127 0.5 1.0 0.8 3.9 157 chr3L 10658179 intron CG32066 - chr3L 10658258 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-227 725 chr3L 11000058 11000091 chr3L 11000139 11000170 9 77 2.0 0.5 1.2 4.1 112 chr3L 11000058 intron klu - chr3L 11000114 intron klu - chr3L 11000170 intron klu - chr3L_9_11000001 chr3L_11000001 RAL-227 726 chr3L 11103837 11103871 chr3L 11104628 11104662 8 791 0.0 2.5 1.2 3.6 825 chr3L 11103837 exon CG32071 - chr3L 11104250 intergenic CG32071 - chr3L 11104662 intergenic not near genes chr3L_8_11100001 chr3L_11100001 RAL-227 727 chr3L 11135528 11135798 chr3L 11135758 11135883 8 121 1.0 1.0 1.0 4.0 355 chr3L 11135528 intergenic CG14143 + chr3L 11135706 intergenic CG14143 +,CG32082 + chr3L 11135883 intergenic CG32082 +,CG14143 + chr3L_8_11135001 chr3L_11135001 RAL-227 728 chr3L 11290625 11290656 chr3L 11290948 11290979 6 322 1.5 1.5 1.5 2.4 354 chr3L 11290625 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11290979 intron CG6175 - chr3L_6_11290001 chr3L_11290001 RAL-227 729 chr3L 11329709 11329725 chr3L 11332914 11332930 jockey 4 3204 3.5 3.0 3.2 1.0 3221 chr3L 11329709 intergenic not near genes chr3L 11331320 intergenic not near genes chr3L 11332930 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-227 730 chr3L 11404828 11404835 chr3L 11404943 11404950 5 115 2.5 1.5 2.0 1.7 122 chr3L 11404828 intergenic not near genes chr3L 11404889 intergenic not near genes chr3L 11404950 intergenic not near genes chr3L_5_11400001 chr3L_11400001 RAL-227 731 chr3L 11587940 11587945 chr3L 11588016 11588020 5 76 2.5 4.0 3.2 1.2 80 chr3L 11587940 intergenic rt - chr3L 11587980 intergenic rt - chr3L 11588020 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-227 732 chr3L 11588732 11588759 chr3L 11588888 11588915 5 154 0.0 5.5 2.8 1.3 183 chr3L 11588732 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588915 intergenic not near genes chr3L_5_11585001 chr3L_11585001 RAL-227 733 chr3L 11642832 11642851 chr3L 11642909 11642928 5 77 1.5 4.0 2.8 1.3 96 chr3L 11642832 3` UTR CG32091 + chr3L 11642880 3` UTR CG32091 + chr3L 11642928 3` UTR CG6071 - chr3L_5_11640001 chr3L_11640001 RAL-227 734 chr3L 11723093 11723121 chr3L 11727882 11727916 Doc 4 4794 2.0 2.0 2.0 1.3 4823 chr3L 11723093 3` UTR Bmcp + chr3L 11725504 intron Bmcp + chr3L 11727916 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-227 735 chr3L 11744015 11744032 chr3L 11744123 11744140 5 108 4.0 0.0 2.0 1.7 125 chr3L 11744015 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744140 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-227 736 chr3L 11750606 11750619 chr3L 11750740 11750765 5 141 0.5 1.0 0.8 2.8 159 chr3L 11750606 intron CG6024 - chr3L 11750686 intron CG6024 - chr3L 11750765 intron CG6024 - chr3L_5_11750001 chr3L_11750001 RAL-227 737 chr3L 11770992 11771017 chr3L 11771078 11771103 7 86 3.5 2.5 3.0 1.8 111 chr3L 11770992 exon Muc68D - chr3L 11771048 exon Muc68D - chr3L 11771103 exon Muc68D - chr3L_7_11770001 chr3L_11770001 RAL-227 738 chr3L 11811456 11811489 chr3L 11811534 11811567 14 77 3.0 3.0 3.0 3.5 111 chr3L 11811456 intron CG42255 - chr3L 11811512 intron CG42255 - chr3L 11811567 exon CG42255 - chr3L_14_11810001 chr3L_11810001 RAL-227 739 chr3L 11864555 11864569 chr3L 11865850 11865864 pogo 4 1294 5.0 2.5 3.8 0.8 1309 chr3L 11864555 intron CG44837 - chr3L 11865210 intron CG44837 - chr3L 11865864 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-227 740 chr3L 11945179 11945215 chr3L 11945259 11945294 8 80 1.0 0.5 0.8 4.4 115 chr3L 11945179 intergenic CG5883 - chr3L 11945236 intergenic CG5883 - chr3L 11945294 intergenic CG5883 - chr3L_8_11945001 chr3L_11945001 RAL-227 741 chr3L 12235846 12235881 chr3L 12235936 12235971 7 89 0.5 1.0 0.8 3.9 125 chr3L 12235846 intron app - chr3L 12235908 intron app - chr3L 12235971 intron app - chr3L_7_12235001 chr3L_12235001 RAL-227 742 chr3L 12353921 12353951 chr3L 12354009 12354040 4 84 1.0 3.5 2.2 1.2 119 chr3L 12353921 intergenic not near genes chr3L 12353980 intergenic not near genes chr3L 12354040 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-227 743 chr3L 12565418 12565444 chr3L 12565498 12565523 8 80 2.0 1.5 1.8 2.9 105 chr3L 12565418 intron sowah - chr3L 12565470 intron sowah - chr3L 12565523 intron sowah - chr3L_8_12565001 chr3L_12565001 RAL-227 744 chr3L 12712065 12712089 chr3L 12712464 12712489 6 399 16.5 19.5 18.0 0.3 424 chr3L 12712065 intergenic not near genes chr3L 12712277 intergenic not near genes chr3L 12712489 intergenic not near genes chr3L_6_12710001 chr3L_12710001 RAL-227 745 chr3L 12788423 12788441 chr3L 12788542 12788561 8 120 1.0 2.5 1.8 2.9 138 chr3L 12788423 intron Atg1 - chr3L 12788492 intron Atg1 - chr3L 12788561 exon Atg1 - chr3L_8_12785001 chr3L_12785001 RAL-227 746 chr3L 12802435 12802461 chr3L 12802521 12802547 6 84 2.0 0.0 1.0 3.0 112 chr3L 12802435 intron Atg1 - chr3L 12802491 intron Atg1 - chr3L 12802547 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-227 747 chr3L 12874925 12874962 chr3L 12877217 12877254 jockey 12 2292 2.0 2.5 2.2 3.8 2329 chr3L 12874925 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_12_12875001 chr3L_12875001 RAL-227 748 chr3L 12919276 12919297 chr3L 12924749 12924768 Rt1c 7 5472 3.5 0.5 2.0 2.3 5492 chr3L 12919276 intergenic not near genes chr3L 12922022 intergenic not near genes chr3L 12924768 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-227 749 chr3L 12919300 12919312 chr3L 12924748 12924778 Rt1c 8 5466 1.5 0.5 1.0 4.0 5478 chr3L 12919300 intergenic not near genes chr3L 12922039 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-227 750 chr3L 12957787 12957814 chr3L 12962269 12962296 copia 6 4482 2.0 3.5 2.8 1.6 4509 chr3L 12957787 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962296 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-227 751 chr3L 12978757 12978782 chr3L 12978835 12978861 5 79 3.0 0.0 1.5 2.0 104 chr3L 12978757 intergenic not near genes chr3L 12978809 intergenic not near genes chr3L 12978861 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-227 752 chr3L 13074038 13074071 chr3L 13074174 13074207 7 134 1.5 2.5 2.0 2.3 169 chr3L 13074038 intergenic not near genes chr3L 13074122 intergenic not near genes chr3L 13074207 intergenic not near genes chr3L_7_13070001 chr3L_13070001 RAL-227 753 chr3L 13144119 13144145 chr3L 13144196 13144222 4 77 2.5 1.5 2.0 1.3 103 chr3L 13144119 intergenic not near genes chr3L 13144170 intergenic not near genes chr3L 13144222 intergenic not near genes chr3L_4_13140001 chr3L_13140001 RAL-227 754 chr3L 13267286 13267297 chr3L 13267399 13267410 6 113 1.5 2.0 1.8 2.1 124 chr3L 13267286 intron caps + chr3L 13267348 intron caps + chr3L 13267410 intron caps + chr3L_6_13265001 chr3L_13265001 RAL-227 755 chr3L 13296523 13296538 chr3L 13296612 13296629 9 90 2.5 3.5 3.0 2.2 106 chr3L 13296523 intergenic Sfp70A4 -,CR45253 + chr3L 13296576 3` UTR Sfp70A4 - chr3L 13296629 3` UTR Sfp70A4 - chr3L_9_13295001 chr3L_13295001 RAL-227 756 chr3L 13369375 13369396 chr3L 13369455 13369475 6 80 2.0 7.0 4.5 1.1 100 chr3L 13369375 intergenic not near genes chr3L 13369425 intergenic not near genes chr3L 13369475 intergenic not near genes chr3L_6_13365001 chr3L_13365001 RAL-227 757 chr3L 13432297 13432310 chr3L 13432396 13432409 9 99 3.5 3.0 3.2 2.1 112 chr3L 13432297 intron CG10713 - chr3L 13432353 intron CG10713 - chr3L 13432409 intron CG10713 - chr3L_9_13430001 chr3L_13430001 RAL-227 758 chr3L 13525157 13525184 chr3L 13532953 13532980 roo 5 7796 2.5 4.0 3.2 1.2 7823 chr3L 13525157 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532980 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-227 759 chr3L 13774644 13774669 chr3L 13774730 13774751 8 85 0.5 3.5 2.0 2.7 107 chr3L 13774644 intron bru-3 - chr3L 13774698 intron bru-3 - chr3L 13774751 intron bru-3 - chr3L_8_13770001 chr3L_13770001 RAL-227 760 chr3L 13804555 13804573 chr3L 13822841 13822859 roo 6 18286 1.0 4.5 2.8 1.6 18304 chr3L 13804555 intergenic not near genes chr3L 13813707 intergenic not near genes chr3L 13822859 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-227 761 chr3L 13871737 13871758 chr3L 13871815 13871836 4 78 2.5 3.0 2.8 1.1 99 chr3L 13871737 3` UTR dysc - chr3L 13871786 3` UTR dysc - chr3L 13871836 3` UTR dysc - chr3L_4_13870001 chr3L_13870001 RAL-227 762 chr3L 14099438 14099448 chr3L 14099528 14099538 5 90 0.5 2.5 1.5 2.0 100 chr3L 14099438 intergenic not near genes chr3L 14099488 intergenic not near genes chr3L 14099538 intergenic not near genes chr3L_5_14095001 chr3L_14095001 RAL-227 763 chr3L 14185155 14185185 chr3L 14185231 14185261 5 76 2.0 1.5 1.8 1.8 106 chr3L 14185155 intergenic not near genes chr3L 14185208 intergenic not near genes chr3L 14185261 intergenic not near genes chr3L_5_14185001 chr3L_14185001 RAL-227 764 chr3L 14194728 14194742 chr3L 14194804 14194818 4 76 0.5 0.0 0.2 3.3 90 chr3L 14194728 intron nuf + chr3L 14194773 intron nuf + chr3L 14194818 intron nuf + chr3L_4_14190001 chr3L_14190001 RAL-227 765 chr3L 14282586 14282600 chr3L 14282666 14282680 4 79 3.5 4.5 4.0 0.8 94 chr3L 14282586 intron fz + chr3L 14282633 intron fz + chr3L 14282680 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-227 766 chr3L 14295986 14296014 chr3L 14296472 14296500 roo 8 485 1.5 2.5 2.0 2.7 514 chr3L 14295986 intron fz + chr3L 14296243 intron fz + chr3L 14296500 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-227 767 chr3L 14399185 14399196 chr3L 14399274 14399279 6 88 3.0 0.0 1.5 2.4 94 chr3L 14399185 intergenic not near genes chr3L 14399232 intergenic not near genes chr3L 14399279 intergenic not near genes chr3L_6_14395001 chr3L_14395001 RAL-227 768 chr3L 14443623 14443655 chr3L 14443812 14443844 8 188 3.0 0.5 1.8 2.9 221 chr3L 14443623 intron bbg - chr3L 14443734 intron bbg - chr3L 14443844 intron bbg - chr3L_8_14440001 chr3L_14440001 RAL-227 769 chr3L 14445728 14445748 chr3L 14445905 14445928 5 178 2.0 2.0 2.0 1.7 200 chr3L 14445728 intron bbg - chr3L 14445828 intron bbg - chr3L 14445928 intron bbg - chr3L_5_14445001 chr3L_14445001 RAL-227 770 chr3L 14462887 14462905 chr3L 14462975 14462993 5 88 0.0 0.5 0.2 4.2 106 chr3L 14462887 intron bbg - chr3L 14462940 intron bbg - chr3L 14462993 intron bbg - chr3L_5_14460001 chr3L_14460001 RAL-227 771 chr3L 14468461 14468473 chr3L 14473667 14473679 copia 4 5206 1.5 1.0 1.2 1.8 5218 chr3L 14468461 intron bbg - chr3L 14471070 intron bbg - chr3L 14473679 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-227 772 chr3L 14486018 14486043 chr3L 14486099 14486124 9 80 1.5 1.0 1.2 4.1 106 chr3L 14486018 intron bbg - chr3L 14486071 intron bbg - chr3L 14486124 intron bbg - chr3L_9_14485001 chr3L_14485001 RAL-227 773 chr3L 14555603 14555617 chr3L 14555726 14555733 4 121 5.0 2.5 3.8 0.8 130 chr3L 14555603 intergenic not near genes chr3L 14555668 intergenic not near genes chr3L 14555733 intergenic not near genes chr3L_4_14555001 chr3L_14555001 RAL-227 774 chr3L 14693302 14693325 chr3L 14693581 14693607 6 277 0.0 3.5 1.8 2.1 305 chr3L 14693302 intron ome + chr3L 14693454 intron ome + chr3L 14693607 intron ome + chr3L_6_14690001 chr3L_14690001 RAL-227 775 chr3L 15053430 15053449 chr3L 15053769 15053787 5 339 0.5 1.5 1.0 2.5 357 chr3L 15053430 intron Sytbeta - chr3L 15053608 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053787 intron,3` UTR Sytbeta -,CG18649 - chr3L_5_15050001 chr3L_15050001 RAL-227 776 chr3L 15085053 15085084 chr3L 15086219 15086249 1360 8 1166 0.5 0.0 0.2 6.7 1196 chr3L 15085053 intron cp309 - chr3L 15085651 intron cp309 - chr3L 15086249 intron cp309 - chr3L_8_15085001 chr3L_15085001 RAL-227 777 chr3L 15358369 15358395 chr3L 15358500 15358526 4 131 1.0 2.5 1.8 1.4 157 chr3L 15358369 intergenic not near genes chr3L 15358448 intergenic not near genes chr3L 15358526 intergenic not near genes chr3L_4_15355001 chr3L_15355001 RAL-227 778 chr3L 15384959 15384990 chr3L 15385085 15385118 4 127 2.5 1.5 2.0 1.3 159 chr3L 15384959 intergenic not near genes chr3L 15385038 intergenic not near genes chr3L 15385118 intergenic not near genes chr3L_4_15385001 chr3L_15385001 RAL-227 779 chr3L 15418041 15418071 chr3L 15418125 15418155 8 84 2.0 4.5 3.2 1.9 114 chr3L 15418041 intergenic not near genes chr3L 15418098 intergenic not near genes chr3L 15418155 intergenic not near genes chr3L_8_15415001 chr3L_15415001 RAL-227 780 chr3L 15423759 15423777 chr3L 15426603 15426621 opus 4 2844 2.0 1.5 1.8 1.4 2862 chr3L 15423759 intergenic not near genes chr3L 15425190 intergenic not near genes chr3L 15426621 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-227 781 chr3L 15444658 15444672 chr3L 15444752 15444765 6 93 5.0 2.5 3.8 1.2 107 chr3L 15444658 intergenic not near genes chr3L 15444712 intergenic not near genes chr3L 15444765 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-227 782 chr3L 15444673 15444681 chr3L 15444750 15444775 4 84 4.0 2.5 3.2 1.0 102 chr3L 15444673 intergenic not near genes chr3L 15444724 intergenic not near genes chr3L 15444775 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-227 783 chr3L 15466037 15466130 chr3L 15466119 15466226 5 85 0.0 0.0 0.0 5.0 189 chr3L 15466037 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466226 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-227 784 chr3L 15478133 15478160 chr3L 15478303 15478330 4 170 1.5 4.0 2.8 1.1 197 chr3L 15478133 intergenic not near genes chr3L 15478232 intergenic not near genes chr3L 15478330 intergenic not near genes chr3L_4_15475001 chr3L_15475001 RAL-227 785 chr3L 15483294 15483326 chr3L 15483423 15483455 7 127 2.0 3.5 2.8 1.8 161 chr3L 15483294 intergenic not near genes chr3L 15483374 intergenic not near genes chr3L 15483455 intergenic not near genes chr3L_7_15480001 chr3L_15480001 RAL-227 786 chr3L 15732128 15732137 chr3L 15732209 15732218 4 81 4.5 0.0 2.2 1.2 90 chr3L 15732128 intergenic not near genes chr3L 15732173 intergenic not near genes chr3L 15732218 intergenic not near genes chr3L_4_15730001 chr3L_15730001 RAL-227 787 chr3L 15756880 15756911 chr3L 15756962 15756994 6 82 2.5 0.0 1.2 2.7 114 chr3L 15756880 intergenic not near genes chr3L 15756937 intergenic not near genes chr3L 15756994 intergenic not near genes chr3L_6_15755001 chr3L_15755001 RAL-227 788 chr3L 15912559 15912572 chr3L 15912637 15912650 4 78 1.5 4.5 3.0 1.0 91 chr3L 15912559 intron sff - chr3L 15912604 intron sff - chr3L 15912650 intron sff - chr3L_4_15910001 chr3L_15910001 RAL-227 789 chr3L 15981673 15981682 chr3L 15981759 15981768 4 86 3.0 0.5 1.8 1.4 95 chr3L 15981673 intron,3` UTR brm -,CG17027 + chr3L 15981720 intron,3` UTR brm -,CG17027 + chr3L 15981768 intron,3` UTR brm -,CG17027 + chr3L_4_15980001 chr3L_15980001 RAL-227 790 chr3L 16027248 16027276 chr3L 16027336 16027363 11 88 1.5 1.0 1.2 5.0 115 chr3L 16027248 intron Notum + chr3L 16027306 intron Notum + chr3L 16027363 intron Notum + chr3L_11_16025001 chr3L_16025001 RAL-227 791 chr3L 16162600 16162626 chr3L 16162684 16162710 6 84 1.0 0.5 0.8 3.3 110 chr3L 16162600 intron CG5151 - chr3L 16162655 intron CG5151 - chr3L 16162710 intron CG5151 - chr3L_6_16160001 chr3L_16160001 RAL-227 792 chr3L 16194336 16194365 chr3L 16194421 16194451 6 86 2.0 2.0 2.0 2.0 115 chr3L 16194336 intergenic not near genes chr3L 16194394 intergenic not near genes chr3L 16194451 intergenic not near genes chr3L_6_16190001 chr3L_16190001 RAL-227 793 chr3L 16253055 16253075 chr3L 16253137 16253157 4 82 1.0 3.0 2.0 1.3 102 chr3L 16253055 intergenic not near genes chr3L 16253106 intergenic not near genes chr3L 16253157 intergenic not near genes chr3L_4_16250001 chr3L_16250001 RAL-227 794 chr3L 16340263 16340288 chr3L 16340387 16340412 9 124 4.5 1.5 3.0 2.2 149 chr3L 16340263 intron CG4998 + chr3L 16340338 intron CG4998 + chr3L 16340412 intron CG4998 + chr3L_9_16340001 chr3L_16340001 RAL-227 795 chr3L 16443851 16443871 chr3L 16446191 16446211 Doc 4 2340 1.0 2.5 1.8 1.4 2360 chr3L 16443851 intron,intron CG33158 +,dsx-c73A - chr3L 16445031 intron,intron CG33158 +,dsx-c73A - chr3L 16446211 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-227 796 chr3L 16457906 16457926 chr3L 16457982 16458001 4 76 3.0 1.5 2.2 1.2 95 chr3L 16457906 intron CG33158 + chr3L 16457954 intron CG33158 + chr3L 16458001 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-227 797 chr3L 16493977 16494008 chr3L 16494494 16494510 jockey 8 514 2.5 2.0 2.2 2.5 533 chr3L 16493977 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494510 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 RAL-227 798 chr3L 16537867 16537878 chr3L 16537954 16537965 5 86 1.0 2.0 1.5 2.0 98 chr3L 16537867 intron CG43373 - chr3L 16537916 intron CG43373 - chr3L 16537965 intron CG43373 - chr3L_5_16535001 chr3L_16535001 RAL-227 799 chr3L 16616513 16616542 chr3L 16621840 16621870 297 6 5328 1.5 3.0 2.2 1.9 5357 chr3L 16616513 3` UTR Abl - chr3L 16619192 3` UTR Abl - chr3L 16621870 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-227 800 chr3L 16648531 16648560 chr3L 16648613 16648640 4 82 1.5 1.5 1.5 1.6 109 chr3L 16648531 3` UTR Baldspot - chr3L 16648586 3` UTR Baldspot - chr3L 16648640 3` UTR Baldspot - chr3L_4_16645001 chr3L_16645001 RAL-227 801 chr3L 16681961 16681981 chr3L 16682928 16682948 5 967 14.5 21.5 18.0 0.3 987 chr3L 16681961 intron,intron Lasp -,CG43954 - chr3L 16682454 intron,intron Lasp -,CG43954 - chr3L 16682948 intron,intron Lasp -,CG43954 - chr3L_5_16680001 chr3L_16680001 RAL-227 802 chr3L 16759024 16759055 chr3L 16759102 16759133 7 77 1.5 0.0 0.8 3.9 109 chr3L 16759024 intergenic not near genes chr3L 16759078 intergenic not near genes chr3L 16759133 intergenic not near genes chr3L_7_16755001 chr3L_16755001 RAL-227 803 chr3L 16786978 16787000 chr3L 16787054 16787076 5 75 0.0 2.0 1.0 2.5 98 chr3L 16786978 intergenic Int6 - chr3L 16787027 intergenic Int6 - chr3L 16787076 intergenic Int6 -,CG9674 - chr3L_5_16785001 chr3L_16785001 RAL-227 804 chr3L 16817876 16817894 chr3L 16818016 16818034 6 140 2.0 3.5 2.8 1.6 158 chr3L 16817876 intron,intron nudC +,CG13024 - chr3L 16817955 intron,intron nudC +,CG13024 - chr3L 16818034 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-227 805 chr3L 16830783 16830792 chr3L 16830860 16830875 6 79 1.0 1.5 1.2 2.7 92 chr3L 16830783 intergenic not near genes chr3L 16830829 intergenic not near genes chr3L 16830875 intergenic not near genes chr3L_6_16830001 chr3L_16830001 RAL-227 806 chr3L 16861038 16861048 chr3L 16861140 16861146 4 101 3.0 1.5 2.2 1.2 108 chr3L 16861038 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861146 intron,intron Rh4 -,CG13029 + chr3L_4_16860001 chr3L_16860001 RAL-227 807 chr3L 16945725 16945757 chr3L 16954878 16954910 roo 10 9153 2.5 0.5 1.5 4.0 9185 chr3L 16945725 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954910 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-227 808 chr3L 17085002 17085029 chr3L 17094151 17094178 roo 9 9148 2.5 3.0 2.8 2.4 9176 chr3L 17085002 intron Rbp6 - chr3L 17089590 intron Rbp6 - chr3L 17094178 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 RAL-227 809 chr3L 17149167 17149176 chr3L 17149248 17149257 4 81 4.0 0.0 2.0 1.3 90 chr3L 17149167 intron Rbp6 - chr3L 17149212 intron Rbp6 - chr3L 17149257 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-227 810 chr3L 17195504 17195534 chr3L 17195845 17195867 13 340 1.5 1.0 1.2 5.9 363 chr3L 17195504 intron Rbp6 - chr3L 17195686 intron Rbp6 - chr3L 17195867 intron Rbp6 - chr3L_13_17195001 chr3L_17195001 RAL-227 811 chr3L 17295216 17295248 chr3L 17295292 17295324 9 75 3.0 3.0 3.0 2.2 108 chr3L 17295216 intergenic not near genes chr3L 17295270 intergenic not near genes chr3L 17295324 intergenic not near genes chr3L_9_17295001 chr3L_17295001 RAL-227 812 chr3L 17386803 17386828 chr3L 17386880 17386905 7 75 2.5 2.5 2.5 2.0 102 chr3L 17386803 intron CG13731 - chr3L 17386854 intron CG13731 - chr3L 17386905 intron CG13731 - chr3L_7_17385001 chr3L_17385001 RAL-227 813 chr3L 17510754 17510765 chr3L 17510838 17510849 5 83 3.0 3.5 3.2 1.2 95 chr3L 17510754 exon Oatp74D + chr3L 17510802 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-227 814 chr3L 17516983 17517009 chr3L 17524541 17524565 412 6 7558 2.0 3.0 2.5 1.7 7582 chr3L 17516983 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524565 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-227 815 chr3L 17580585 17580609 chr3L 17580761 17580785 7 176 3.0 0.0 1.5 2.8 200 chr3L 17580585 intron Eip74EF - chr3L 17580685 intron Eip74EF - chr3L 17580785 intron Eip74EF - chr3L_7_17580001 chr3L_17580001 RAL-227 816 chr3L 17586967 17587000 chr3L 17587101 17587134 5 134 2.0 1.5 1.8 1.8 167 chr3L 17586967 intron Eip74EF - chr3L 17587050 intron Eip74EF - chr3L 17587134 intron Eip74EF - chr3L_5_17585001 chr3L_17585001 RAL-227 817 chr3L 17646017 17646048 chr3L 17646182 17646213 10 166 20.5 19.5 20.0 0.5 196 chr3L 17646017 exon CG43085 - chr3L 17646115 exon CG43085 - chr3L 17646213 exon CG43085 - chr3L_10_17645001 chr3L_17645001 RAL-227 818 chr3L 17797688 17797712 chr3L 17797768 17797792 4 80 1.5 2.5 2.0 1.3 104 chr3L 17797688 intergenic NUCB1 -,CG42816 - chr3L 17797740 3` UTR NUCB1 - chr3L 17797792 3` UTR NUCB1 - chr3L_4_17795001 chr3L_17795001 RAL-227 819 chr3L 17799810 17799839 chr3L 17801597 17801626 S-element 5 1787 0.5 1.5 1.0 2.5 1816 chr3L 17799810 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801626 intron NUCB1 - chr3L_5_17800001 chr3L_17800001 RAL-227 820 chr3L 17836216 17836237 chr3L 17836293 17836314 6 77 2.0 4.5 3.2 1.4 98 chr3L 17836216 intron Grd + chr3L 17836265 intron Grd + chr3L 17836314 intron Grd + chr3L_6_17835001 chr3L_17835001 RAL-227 821 chr3L 18000672 18000707 chr3L 18000749 18000784 13 77 0.0 1.5 0.8 7.2 112 chr3L 18000672 intron Eip75B - chr3L 18000728 intron Eip75B - chr3L 18000784 intron Eip75B - chr3L_13_18000001 chr3L_18000001 RAL-227 822 chr3L 18047709 18047731 chr3L 18056766 18056788 roo 4 9057 1.5 2.5 2.0 1.3 9079 chr3L 18047709 intron Eip75B - chr3L 18052248 intron Eip75B - chr3L 18056788 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-227 823 chr3L 18118217 18118238 chr3L 18118295 18118316 5 78 2.0 2.0 2.0 1.7 99 chr3L 18118217 3` UTR,intron CG32195 +,CG7341 + chr3L 18118266 3` UTR,intron CG32195 +,CG7341 + chr3L 18118316 3` UTR,intron CG32195 +,CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-227 824 chr3L 18133023 18133046 chr3L 18133113 18133125 4 87 0.5 0.5 0.5 2.7 102 chr3L 18133023 intergenic Cyp312a1 - chr3L 18133074 intergenic Cyp312a1 - chr3L 18133125 intergenic Cyp312a1 - chr3L_4_18130001 chr3L_18130001 RAL-227 825 chr3L 18138161 18138183 chr3L 18138245 18138267 6 84 4.0 1.5 2.8 1.6 106 chr3L 18138161 intergenic not near genes chr3L 18138214 intergenic not near genes chr3L 18138267 intergenic not near genes chr3L_6_18135001 chr3L_18135001 RAL-227 826 chr3L 18150413 18150433 chr3L 18150515 18150533 4 102 0.5 0.0 0.2 3.3 120 chr3L 18150413 intron CG7330 + chr3L 18150473 intron CG7330 + chr3L 18150533 intron CG7330 + chr3L_4_18150001 chr3L_18150001 RAL-227 827 chr3L 18172693 18172704 chr3L 18172768 18172780 5 76 3.5 1.0 2.2 1.6 87 chr3L 18172693 intron W - chr3L 18172736 intron W - chr3L 18172780 intron W - chr3L_5_18170001 chr3L_18170001 RAL-227 828 chr3L 18198930 18198931 chr3L 24821492 24821494 5 6622563 0.0 4.0 2.0 1.7 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-227 829 chr3L 18318737 18318771 chr3L 18318822 18318856 4 85 1.0 0.0 0.5 2.7 119 chr3L 18318737 intergenic not near genes chr3L 18318796 intergenic not near genes chr3L 18318856 intergenic not near genes chr3L_4_18315001 chr3L_18315001 RAL-227 830 chr3L 18324810 18324843 chr3L 18324899 18324933 4 90 1.5 0.5 1.0 2.0 123 chr3L 18324810 intergenic not near genes chr3L 18324872 intergenic not near genes chr3L 18324933 intergenic not near genes chr3L_4_18320001 chr3L_18320001 RAL-227 831 chr3L 18343660 18343680 chr3L 18343938 18343958 5 277 1.5 3.5 2.5 1.4 298 chr3L 18343660 intergenic not near genes chr3L 18343809 intergenic not near genes chr3L 18343958 intergenic not near genes chr3L_5_18340001 chr3L_18340001 RAL-227 832 chr3L 18408743 18408759 chr3L 18408829 18408844 5 86 1.5 0.5 1.0 2.5 101 chr3L 18408743 intergenic not near genes chr3L 18408794 intergenic not near genes chr3L 18408844 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-227 833 chr3L 18436063 18436080 chr3L 18436161 18436178 6 98 3.5 1.5 2.5 1.7 115 chr3L 18436063 intergenic not near genes chr3L 18436120 intergenic not near genes chr3L 18436178 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-227 834 chr3L 18528628 18528657 chr3L 18537789 18537818 roo 6 9161 0.5 1.5 1.0 3.0 9190 chr3L 18528628 intergenic not near genes chr3L 18533223 intergenic not near genes chr3L 18537818 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-227 835 chr3L 18538640 18538659 chr3L 18539133 18539150 7 493 1.0 4.0 2.5 2.0 510 chr3L 18538640 intergenic not near genes chr3L 18538895 intergenic not near genes chr3L 18539150 intergenic not near genes chr3L_7_18535001 chr3L_18535001 RAL-227 836 chr3L 18593947 18593977 chr3L 18595927 18595957 Doc 4 1980 0.5 0.0 0.2 3.3 2010 chr3L 18593947 intergenic term - chr3L 18594952 intergenic not near genes chr3L 18595957 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 RAL-227 837 chr3L 18606747 18606780 chr3L 18606945 18606976 11 196 2.5 0.5 1.5 4.4 229 chr3L 18606747 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606862 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606976 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_11_18605001 chr3L_18605001 RAL-227 838 chr3L 18638576 18638606 chr3L 18638670 18638700 9 94 1.0 1.5 1.2 4.1 124 chr3L 18638576 intron MYPT-75D + chr3L 18638638 intron MYPT-75D + chr3L 18638700 intron MYPT-75D + chr3L_9_18635001 chr3L_18635001 RAL-227 839 chr3L 18772423 18772435 chr3L 18781090 18781115 roo 5 8678 1.0 1.5 1.2 2.3 8692 chr3L 18772423 intron ftz-f1 - chr3L 18776769 intron ftz-f1 - chr3L 18781115 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-227 840 chr3L 18832614 18832638 chr3L 18832692 18832716 4 78 0.5 3.5 2.0 1.3 102 chr3L 18832614 intron Indy - chr3L 18832665 intron Indy - chr3L 18832716 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-227 841 chr3L 18833777 18833805 chr3L 18834941 18834969 1360 4 1164 3.0 2.0 2.5 1.1 1192 chr3L 18833777 intron Indy - chr3L 18834373 intron Indy - chr3L 18834969 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-227 842 chr3L 18839749 18839765 chr3L 18839828 18839848 5 82 2.0 3.0 2.5 1.4 99 chr3L 18839749 intron Indy - chr3L 18839798 intron Indy - chr3L 18839848 intron Indy - chr3L_5_18835001 chr3L_18835001 RAL-227 843 chr3L 18888257 18888289 chr3L 18888342 18888374 6 85 1.5 1.0 1.2 2.7 117 chr3L 18888257 intron CG3961 - chr3L 18888316 intron CG3961 - chr3L 18888374 intron CG3961 - chr3L_6_18885001 chr3L_18885001 RAL-227 844 chr3L 18933629 18933660 chr3L 18933722 18933753 4 94 1.5 1.5 1.5 1.6 124 chr3L 18933629 intron CG32204 - chr3L 18933691 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-227 845 chr3L 18951023 18951048 chr3L 18951100 18951124 6 76 1.0 3.0 2.0 2.0 101 chr3L 18951023 intron CG6836 + chr3L 18951074 intron CG6836 + chr3L 18951124 intron CG6836 + chr3L_6_18950001 chr3L_18950001 RAL-227 846 chr3L 19082036 19082069 chr3L 19082138 19082171 7 102 1.5 1.5 1.5 2.8 135 chr3L 19082036 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082171 intron Mkp3 - chr3L_7_19080001 chr3L_19080001 RAL-227 847 chr3L 19098347 19098376 chr3L 19098425 19098454 10 77 2.5 4.0 3.2 2.4 107 chr3L 19098347 exon CG14079 + chr3L 19098400 exon CG14079 + chr3L 19098454 exon CG14079 + chr3L_10_19095001 chr3L_19095001 RAL-227 848 chr3L 19117051 19117073 chr3L 19124487 19124520 mdg1 11 7444 5.0 2.5 3.8 2.3 7469 chr3L 19117051 intron CG14082 - chr3L 19120786 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-227 849 chr3L 19182384 19182410 chr3L 19182465 19182491 5 79 1.5 0.0 0.8 2.8 107 chr3L 19182384 intron fz2 - chr3L 19182438 intron fz2 - chr3L 19182491 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-227 850 chr3L 19208058 19208092 chr3L 19209431 19209437 Doc 8 1370 4.5 1.5 3.0 2.0 1379 chr3L 19208058 intron fz2 - chr3L 19208748 intron fz2 - chr3L 19209437 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-227 851 chr3L 19282271 19282297 chr3L 19282367 19282393 9 96 2.0 4.0 3.0 2.2 122 chr3L 19282271 3` UTR Gbs-76A - chr3L 19282332 3` UTR Gbs-76A - chr3L 19282393 3` UTR Gbs-76A - chr3L_9_19280001 chr3L_19280001 RAL-227 852 chr3L 19382445 19382467 chr3L 19382827 19382849 7 382 3.5 0.0 1.8 2.5 404 chr3L 19382445 intron CG32206 - chr3L 19382647 intron CG32206 - chr3L 19382849 intron CG32206 - chr3L_7_19380001 chr3L_19380001 RAL-227 853 chr3L 19426752 19426776 chr3L 19426829 19426854 6 75 2.5 2.5 2.5 1.7 102 chr3L 19426752 intergenic not near genes chr3L 19426803 intergenic not near genes chr3L 19426854 intergenic not near genes chr3L_6_19425001 chr3L_19425001 RAL-227 854 chr3L 19527927 19527953 chr3L 19528006 19528032 6 79 4.5 1.5 3.0 1.5 105 chr3L 19527927 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528032 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-227 855 chr3L 19933541 19933562 chr3L 19934363 19934378 5 820 2.0 0.5 1.2 2.3 837 chr3L 19933541 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934378 intergenic CR45678 + chr3L_5_19930001 chr3L_19930001 RAL-227 856 chr3L 19981204 19981223 chr3L 19981284 19981303 5 79 0.0 0.5 0.2 4.2 99 chr3L 19981204 intergenic CG17732 + chr3L 19981254 intergenic CG17732 + chr3L 19981303 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-227 857 chr3L 20113478 20113506 chr3L 20113573 20113600 4 94 4.5 1.5 3.0 1.0 122 chr3L 20113478 intergenic not near genes chr3L 20113539 intergenic not near genes chr3L 20113600 intergenic not near genes chr3L_4_20110001 chr3L_20110001 RAL-227 858 chr3L 20113657 20113681 chr3L 20122914 20122938 roo 8 9257 3.5 1.0 2.2 2.5 9281 chr3L 20113657 intergenic not near genes chr3L 20118298 intergenic not near genes chr3L 20122938 intergenic not near genes chr3L_8_20115001 chr3L_20115001 RAL-227 859 chr3L 20143081 20143113 chr3L 20143161 20143193 8 79 2.0 2.5 2.2 2.5 112 chr3L 20143081 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143193 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-227 860 chr3L 20257354 20257362 chr3L 20258461 20258483 pogo 6 1116 2.0 2.5 2.2 1.9 1129 chr3L 20257354 intron rdgC + chr3L 20257918 intron rdgC + chr3L 20258483 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-227 861 chr3L 20315659 20315681 chr3L 20315739 20315761 5 80 2.0 2.5 2.2 1.6 102 chr3L 20315659 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315710 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315761 3` UTR,intron alphaSnap +,CR43875 - chr3L_5_20315001 chr3L_20315001 RAL-227 862 chr3L 20423013 20423036 chr3L 20423228 20423251 10 214 6.5 2.5 4.5 1.8 238 chr3L 20423013 exon zye + chr3L 20423132 exon zye + chr3L 20423251 exon zye + chr3L_10_20420001 chr3L_20420001 RAL-227 863 chr3L 20476762 20476785 chr3L 20484361 20484384 springer 4 7599 1.5 1.0 1.2 1.8 7622 chr3L 20476762 3` UTR isoQC + chr3L 20480573 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-227 864 chr3L 20536312 20536343 chr3L 20536393 20536424 5 81 1.5 2.0 1.8 1.8 112 chr3L 20536312 intron Rcd2 - chr3L 20536368 intron Rcd2 - chr3L 20536424 intron Rcd2 - chr3L_5_20535001 chr3L_20535001 RAL-227 865 chr3L 20593813 20593837 chr3L 20593893 20593917 8 74 1.5 2.0 1.8 2.9 104 chr3L 20593813 intergenic not near genes chr3L 20593865 intergenic not near genes chr3L 20593917 intergenic not near genes chr3L_8_20590001 chr3L_20590001 RAL-227 866 chr3L 20710758 20710781 chr3L 20710835 20710857 7 77 2.5 1.0 1.8 2.5 99 chr3L 20710758 intergenic not near genes chr3L 20710808 intergenic not near genes chr3L 20710857 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-227 867 chr3L 20849284 20849301 chr3L 20849363 20849380 5 79 2.0 5.0 3.5 1.1 96 chr3L 20849284 intron CG32432 - chr3L 20849332 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-227 868 chr3L 20849720 20849747 chr3L 20850069 20850096 7 348 0.0 2.0 1.0 3.5 376 chr3L 20849720 intron CG32432 - chr3L 20849908 intron CG32432 - chr3L 20850096 intron CG32432 - chr3L_7_20845001 chr3L_20845001 RAL-227 869 chr3L 20964613 20964649 chr3L 20964690 20964725 14 77 2.0 3.5 2.8 3.7 112 chr3L 20964613 3` UTR CG12983 - chr3L 20964669 3` UTR CG12983 - chr3L 20964725 3` UTR CG12983 - chr3L_14_20960001 chr3L_20960001 RAL-227 870 chr3L 20977411 20977448 chr3L 20977537 20977573 4 126 3.0 0.5 1.8 1.4 162 chr3L 20977411 intergenic not near genes chr3L 20977492 intergenic not near genes chr3L 20977573 intergenic not near genes chr3L_4_20975001 chr3L_20975001 RAL-227 871 chr3L 21116593 21116614 chr3L 21116867 21116888 6 274 3.0 3.5 3.2 1.4 295 chr3L 21116593 intron ko - chr3L 21116740 intron ko - chr3L 21116888 intron ko - chr3L_6_21115001 chr3L_21115001 RAL-227 872 chr3L 21151862 21151891 chr3L 21156946 21156975 flea 7 5084 5.5 2.5 4.0 1.4 5113 chr3L 21151862 intron Ac78C - chr3L 21154418 intron Ac78C - chr3L 21156975 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-227 873 chr3L 21172838 21172871 chr3L 21172938 21172974 6 102 0.5 2.0 1.2 2.7 136 chr3L 21172838 intergenic chb +,asparagine-synthetase + chr3L 21172906 5` UTR chb + chr3L 21172974 5` UTR chb + chr3L_6_21170001 chr3L_21170001 RAL-227 874 chr3L 21361742 21361746 chr3L 21362688 21362700 G2 5 952 3.5 2.0 2.8 1.3 958 chr3L 21361742 intergenic not near genes chr3L 21362221 intergenic not near genes chr3L 21362700 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-227 875 chr3L 21406993 21407026 chr3L 21407072 21407105 8 79 3.5 2.5 3.0 2.0 112 chr3L 21406993 intron rgn + chr3L 21407049 intron rgn + chr3L 21407105 intron rgn + chr3L_8_21405001 chr3L_21405001 RAL-227 876 chr3L 21412760 21412782 chr3L 21412838 21412842 7 75 0.0 3.0 1.5 2.8 82 chr3L 21412760 intron rgn + chr3L 21412801 intron rgn + chr3L 21412842 intron rgn + chr3L_7_21410001 chr3L_21410001 RAL-227 877 chr3L 21498835 21498870 chr3L 21500471 21500505 1360 4 1636 1.5 3.0 2.2 1.2 1670 chr3L 21498835 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-227 878 chr3L 21649783 21649796 chr3L 21650002 21650020 6 223 0.5 2.5 1.5 2.4 237 chr3L 21649783 intron CG43980 + chr3L 21649902 intron CG43980 + chr3L 21650020 intron CG43980 + chr3L_6_21645001 chr3L_21645001 RAL-227 879 chr3L 21749318 21749337 chr3L 21754477 21754494 Doc 4 5158 4.0 2.5 3.2 1.0 5176 chr3L 21749318 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754494 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-227 880 chr3L 22099687 22099699 chr3L 22105873 22105885 3S18 5 6186 6.5 3.0 4.8 0.9 6198 chr3L 22099687 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105885 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-227 881 chr3L 22114781 22114806 chr3L 22114859 22114884 5 76 0.5 1.5 1.0 2.5 103 chr3L 22114781 intergenic not near genes chr3L 22114832 intergenic not near genes chr3L 22114884 intergenic not near genes chr3L_5_22110001 chr3L_22110001 RAL-227 882 chr3L 22137522 22137542 chr3L 22137599 22137619 6 77 1.0 2.5 1.8 2.1 97 chr3L 22137522 intron olf413 + chr3L 22137570 intron olf413 + chr3L 22137619 intron olf413 + chr3L_6_22135001 chr3L_22135001 RAL-227 883 chr3L 22223439 22223467 chr3L 22223599 22223628 7 157 1.5 0.0 0.8 3.9 189 chr3L 22223439 intron olf413 + chr3L 22223534 intron olf413 + chr3L 22223628 intron olf413 + chr3L_7_22220001 chr3L_22220001 RAL-227 884 chr3L 22338576 22338587 chr3L 22339198 22339209 4 622 3.5 4.0 3.8 0.8 633 chr3L 22338576 intron Ten-m - chr3L 22338892 intron Ten-m - chr3L 22339209 intron Ten-m - chr3L_4_22335001 chr3L_22335001 RAL-227 885 chr3L 22338589 22338610 chr3L 22339197 22339231 8 616 1.5 3.5 2.5 2.3 642 chr3L 22338589 intron Ten-m - chr3L 22338910 intron Ten-m - chr3L 22339231 intron Ten-m - chr3L_8_22335001 chr3L_22335001 RAL-227 886 chr3L 22361939 22361969 chr3L 22362016 22362046 4 74 1.5 1.5 1.5 1.6 107 chr3L 22361939 intron Ten-m - chr3L 22361992 intron Ten-m - chr3L 22362046 intron Ten-m - chr3L_4_22360001 chr3L_22360001 RAL-227 887 chr3L 22395594 22395624 chr3L 22395677 22395707 5 82 1.5 1.5 1.5 2.0 113 chr3L 22395594 intron Ten-m - chr3L 22395650 intron Ten-m - chr3L 22395707 intron Ten-m - chr3L_5_22395001 chr3L_22395001 RAL-227 888 chr3L 22507124 22507152 chr3L 22507211 22507239 6 84 2.5 3.5 3.0 1.5 115 chr3L 22507124 intergenic not near genes chr3L 22507182 intergenic not near genes chr3L 22507239 intergenic not near genes chr3L_6_22505001 chr3L_22505001 RAL-227 889 chr3L 22555770 22555802 chr3L 22563240 22563256 blood 12 7464 2.0 0.5 1.2 5.5 7486 chr3L 22555770 intergenic not near genes chr3L 22559513 intergenic not near genes chr3L 22563256 intergenic not near genes chr3L_12_22555001 chr3L_22555001 RAL-227 890 chr3L 22570425 22570441 chr3L 22570569 22570585 6 144 1.5 2.0 1.8 2.1 160 chr3L 22570425 intergenic not near genes chr3L 22570505 intergenic not near genes chr3L 22570585 intergenic not near genes chr3L_6_22570001 chr3L_22570001 RAL-227 891 chr3L 22577617 22577648 chr3L 22582405 22582431 Doc 7 4783 3.0 0.0 1.5 2.8 4814 chr3L 22577617 intergenic not near genes chr3L 22580024 intergenic not near genes chr3L 22582431 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-227 892 chr3L 22617189 22617221 chr3L 22624641 22624673 blood 9 7451 3.5 2.5 3.0 2.2 7484 chr3L 22617189 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-227 893 chr3L 22630740 22630763 chr3L 22630819 22630842 6 77 2.0 1.0 1.5 2.4 102 chr3L 22630740 intron CG14459 - chr3L 22630791 intron CG14459 - chr3L 22630842 intron CG14459 - chr3L_6_22630001 chr3L_22630001 RAL-227 894 chr3L 22652322 22652352 chr3L 22652458 22652490 10 137 1.0 0.5 0.8 5.6 168 chr3L 22652322 exon CG33772 - chr3L 22652406 intron CG33772 - chr3L 22652490 exon CG33772 - chr3L_10_22650001 chr3L_22650001 RAL-227 895 chr3L 22732465 22732490 chr3L 22732545 22732571 8 80 1.0 1.5 1.2 3.6 106 chr3L 22732465 intron CG11367 + chr3L 22732518 intron CG11367 + chr3L 22732571 intron CG11367 + chr3L_8_22730001 chr3L_22730001 RAL-227 896 chr3L 22756401 22756432 chr3L 22756478 22756509 9 76 3.5 4.0 3.8 1.9 108 chr3L 22756401 intron SPoCk + chr3L 22756455 intron SPoCk + chr3L 22756509 intron SPoCk + chr3L_9_22755001 chr3L_22755001 RAL-227 897 chr3L 22760432 22760461 chr3L 22760517 22760546 4 85 1.0 3.5 2.2 1.2 114 chr3L 22760432 intron SPoCk + chr3L 22760489 intron SPoCk + chr3L 22760546 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-227 898 chr3L 22761387 22761408 chr3L 22766821 22766834 Ivk 4 5432 1.5 4.0 2.8 1.1 5447 chr3L 22761387 intron SPoCk + chr3L 22764110 intron SPoCk + chr3L 22766834 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-227 899 chr3L 22853464 22853722 chr3L 22853551 22853808 15 86 1.5 2.5 2.0 5.0 344 chr3L 22853464 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853808 5` UTR CR43426 + chr3L_15_22850001 chr3L_22850001 RAL-227 900 chr3L 22897199 22897225 chr3L 22897278 22897298 11 82 2.5 1.5 2.0 3.7 99 chr3L 22897199 intergenic not near genes chr3L 22897248 intergenic not near genes chr3L 22897298 intergenic not near genes chr3L_11_22895001 chr3L_22895001 RAL-227 901 chr3L 20525230 20525230 chr3L 22908067 22908067 4 2382837 5.5 11.0 8.2 0.4 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-227 902 chr3L 22974367 22974395 chr3L 22974446 22974471 5 78 3.0 1.0 2.0 1.7 104 chr3L 22974367 intergenic not near genes chr3L 22974419 intergenic not near genes chr3L 22974471 intergenic not near genes chr3L_5_22970001 chr3L_22970001 RAL-227 903 chr3L 22989860 22989895 chr3L 22996834 22996869 297 5 6971 1.5 1.5 1.5 2.0 7009 chr3L 22989860 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996869 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-227 904 chr3L 23004916 23004938 chr3L 23005228 23005263 7 319 1.0 2.0 1.5 2.8 347 chr3L 23004916 intron nrm + chr3L 23005090 intron nrm + chr3L 23005263 intron nrm + chr3L_7_23005001 chr3L_23005001 RAL-227 905 chr3L 23096075 23096098 chr3L 23096158 23096181 4 83 3.5 2.5 3.0 1.0 106 chr3L 23096075 intergenic not near genes chr3L 23096128 intergenic not near genes chr3L 23096181 intergenic not near genes chr3L_4_23095001 chr3L_23095001 RAL-227 906 chr3L 23213286 23213304 chr3L 23213653 23213670 7 367 3.0 2.0 2.5 2.0 384 chr3L 23213286 intron nAChRalpha4 + chr3L 23213478 intron nAChRalpha4 + chr3L 23213670 intron nAChRalpha4 + chr3L_7_23210001 chr3L_23210001 RAL-227 907 chr3L 24021277 24021307 chr3L 24022434 24022441 1360 4 1149 3.0 1.5 2.2 1.2 1164 chr3L 24021277 intergenic not near genes chr3L 24021859 intergenic not near genes chr3L 24022441 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-227 908 chr3L 24040669 24040697 chr3L 24040802 24040830 5 133 1.0 3.5 2.2 1.6 161 chr3L 24040669 intergenic not near genes chr3L 24040750 intergenic not near genes chr3L 24040830 intergenic not near genes chr3L_5_24040001 chr3L_24040001 RAL-227 909 chr3L 24282155 24282168 chr3L 24282239 24282252 4 84 2.5 2.0 2.2 1.2 97 chr3L 24282155 intron Snap25 + chr3L 24282204 intron Snap25 + chr3L 24282252 intron Snap25 + chr3L_4_24280001 chr3L_24280001 RAL-227 910 chr3L 24324293 24324317 chr3L 24324388 24324412 5 95 1.0 1.5 1.2 2.3 119 chr3L 24324293 intergenic not near genes chr3L 24324352 intergenic not near genes chr3L 24324412 intergenic nvd + chr3L_5_24320001 chr3L_24320001 RAL-227 911 chr3L 24791895 24791912 chr3L 24796674 24796691 Doc 4 4779 2.5 1.0 1.8 1.4 4796 chr3L 24791895 intergenic not near genes chr3L 24794293 intergenic not near genes chr3L 24796691 intergenic not near genes chr3L_4_24790001 chr3L_24790001 RAL-227 912 chr3L 25464028 25464098 chr3L 25464108 25464196 10 93 2.5 1.5 2.0 3.3 168 chr3L 25464028 intergenic not near genes chr3L 25464112 intergenic not near genes chr3L 25464196 intergenic not near genes chr3L_10_25460001 chr3L_25460001 RAL-227 913 chr3L 25513580 25513602 chr3L 25513659 25513681 6 79 1.5 0.5 1.0 3.0 101 chr3L 25513580 intron CG41343 - chr3L 25513630 intron CG41343 - chr3L 25513681 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-227 914 chr3L 25627820 25627836 chr3L 25627905 25627922 6 86 3.5 3.5 3.5 1.3 102 chr3L 25627820 intron CG41343 - chr3L 25627871 intron CG41343 - chr3L 25627922 intron CG41343 - chr3L_6_25625001 chr3L_25625001 RAL-227 915 chr3L 25842485 25842499 chr3L 25842571 25842585 5 86 0.5 3.5 2.0 1.7 100 chr3L 25842485 intron CG40178 - chr3L 25842535 intron CG40178 - chr3L 25842585 intron CG40178 - chr3L_5_25840001 chr3L_25840001 RAL-227 916 chr3L 27167955 27167980 chr3L 27168075 27168075 8 117 4.5 3.5 4.0 1.6 120 chr3L 27167955 intergenic not near genes chr3L 27168015 intergenic not near genes chr3L 27168075 intergenic not near genes chr3L_8_27165001 chr3L_27165001 RAL-227 917 chr3R 1443435 1443460 chr3R 1443511 1443528 5 74 1.5 2.0 1.8 1.8 93 chr3R 1443435 intron CG40155 + chr3R 1443482 intron CG40155 + chr3R 1443528 intron CG40155 + chr3R_5_1440001 chr3R_1440001 RAL-227 918 chr3R 3877470 3877500 chr3R 3877611 3877641 9 140 1.5 4.0 2.8 2.4 171 chr3R 3877470 intergenic not near genes chr3R 3877556 intergenic not near genes chr3R 3877641 intergenic not near genes chr3R_9_3875001 chr3R_3875001 RAL-227 919 chr3R 4206074 4206100 chr3R 4211649 4211675 mdg3 5 5575 1.5 2.0 1.8 1.8 5601 chr3R 4206074 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211675 intron CG14636 - chr3R_5_4205001 chr3R_4205001 RAL-227 920 chr3R 4366761 4366791 chr3R 4375144 4375174 roo 6 8383 1.5 5.0 3.2 1.4 8413 chr3R 4366761 3` UTR CG1090 + chr3R 4370968 intergenic not near genes chr3R 4375174 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-227 921 chr3R 4408416 4408442 chr3R 4412719 4412746 Juan 5 4303 3.5 3.5 3.5 1.1 4330 chr3R 4408416 intron CG32944 - chr3R 4410581 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-227 922 chr3R 4599303 4599330 chr3R 4599387 4599414 4 84 0.5 0.5 0.5 2.7 111 chr3R 4599303 intron CR44317 - chr3R 4599358 intron CR44317 - chr3R 4599414 intron CR44317 - chr3R_4_4595001 chr3R_4595001 RAL-227 923 chr3R 4657289 4657319 chr3R 4657378 4657408 6 89 0.5 1.0 0.8 3.3 119 chr3R 4657289 intron spartin + chr3R 4657348 intron spartin + chr3R 4657408 intron spartin + chr3R_6_4655001 chr3R_4655001 RAL-227 924 chr3R 4665211 4665245 chr3R 4665386 4665420 10 174 1.0 1.5 1.2 4.5 209 chr3R 4665211 intron CG43427 + chr3R 4665316 intron CG43427 + chr3R 4665420 intron CG43427 + chr3R_10_4665001 chr3R_4665001 RAL-227 925 chr3R 4753242 4753257 chr3R 4757545 4757560 F-element 5 4302 6.5 3.0 4.8 0.9 4318 chr3R 4753242 intron,intron atms +,CG44098 - chr3R 4755401 intron,intron atms +,CG44098 - chr3R 4757560 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-227 926 chr3R 4759731 4759744 chr3R 4761228 4761241 hopper2 7 1497 1.0 3.0 2.0 2.3 1510 chr3R 4759731 intron,intron atms +,CG44098 - chr3R 4760486 intron,intron atms +,CG44098 - chr3R 4761241 intron,intron atms +,CG44098 - chr3R_7_4760001 chr3R_4760001 RAL-227 927 chr3R 4769165 4769186 chr3R 4769242 4769264 7 77 2.0 2.5 2.2 2.2 99 chr3R 4769165 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769264 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-227 928 chr3R 4887481 4887511 chr3R 4894858 4894888 rover 5 7377 2.0 1.5 1.8 1.8 7407 chr3R 4887481 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894888 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-227 929 chr3R 4904877 4904888 chr3R 18214683 18214694 6 13309806 9.5 6.0 7.8 0.7 13309817 chr3R 4904877 intergenic not near genes chr3R 11559786 3` UTR CG10898 + chr3R 18214694 3` UTR CG7985 + chr3R_6_11555001 chr3R_11555001 RAL-227 930 chr3R 4966007 4966028 chr3R 4966099 4966120 5 92 2.0 2.0 2.0 1.7 113 chr3R 4966007 intron CG1124 + chr3R 4966064 intron CG1124 + chr3R 4966120 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-227 931 chr3R 4984902 4984916 chr3R 4985006 4985020 5 104 1.5 4.0 2.8 1.3 118 chr3R 4984902 3` UTR CR43424 - chr3R 4984961 3` UTR CR43424 - chr3R 4985020 3` UTR CR43424 - chr3R_5_4980001 chr3R_4980001 RAL-227 932 chr3R 5027384 5027414 chr3R 5495968 5495999 13 468584 3.0 13.0 8.0 1.4 468615 chr3R 5027384 intergenic not near genes chr3R 5261692 intron,intron Hph +,Tim17a2 - chr3R 5495999 intron CG31547 - chr3R_13_5260001 chr3R_5260001 RAL-227 933 chr3R 5067979 5068012 chr3R 5073496 5073527 mdg3 6 5516 1.0 1.5 1.2 2.7 5548 chr3R 5067979 intergenic not near genes chr3R 5070753 intergenic not near genes chr3R 5073527 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-227 934 chr3R 5338396 5338429 chr3R 5343573 5343592 Rt1c 9 5175 2.5 4.0 3.2 2.1 5196 chr3R 5338396 intron mtd - chr3R 5340994 intron mtd - chr3R 5343592 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-227 935 chr3R 5445959 5445990 chr3R 5452419 5452450 Burdock 8 6459 1.5 1.0 1.2 3.6 6491 chr3R 5445959 intron CG14669 + chr3R 5449204 intron CG14669 + chr3R 5452450 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-227 936 chr3R 5726093 5726111 chr3R 5726255 5726273 4 160 1.5 1.5 1.5 1.6 180 chr3R 5726093 intergenic not near genes chr3R 5726183 intergenic not near genes chr3R 5726273 intergenic not near genes chr3R_4_5725001 chr3R_5725001 RAL-227 937 chr3R 5746015 5746042 chr3R 5746256 5746283 pogo 9 241 2.5 2.0 2.2 2.8 268 chr3R 5746015 3` UTR Madm + chr3R 5746149 3` UTR Madm + chr3R 5746283 3` UTR Madm + chr3R_9_5745001 chr3R_5745001 RAL-227 938 chr3R 5747028 5747045 chr3R 5753219 5753236 diver 5 6191 1.5 0.5 1.0 2.5 6208 chr3R 5747028 intergenic Madm + chr3R 5750132 intergenic not near genes chr3R 5753236 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-227 939 chr3R 5783974 5783985 chr3R 5784083 5784094 5 109 3.0 3.5 3.2 1.2 120 chr3R 5783974 intron kat-60L1 + chr3R 5784034 intron kat-60L1 + chr3R 5784094 intron kat-60L1 + chr3R_5_5780001 chr3R_5780001 RAL-227 940 chr3R 5822379 5822401 chr3R 5823546 5823560 1360 5 1165 4.5 2.0 3.2 1.2 1181 chr3R 5822379 3` UTR CG2023 - chr3R 5822970 3` UTR CG2023 - chr3R 5823560 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-227 941 chr3R 5872988 5872992 chr3R 5873206 5873209 4 218 0.5 4.5 2.5 1.1 221 chr3R 5872988 intron CG34113 - chr3R 5873098 intron CG34113 - chr3R 5873209 intron CG34113 - chr3R_4_5870001 chr3R_5870001 RAL-227 942 chr3R 5927563 5927584 chr3R 5927803 5927824 pogo 4 240 3.0 2.0 2.5 1.1 261 chr3R 5927563 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927824 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-227 943 chr3R 5954323 5954354 chr3R 5954399 5954430 5 76 0.5 2.0 1.2 2.3 107 chr3R 5954323 intron CG34113 - chr3R 5954376 intron CG34113 - chr3R 5954430 intron CG34113 - chr3R_5_5950001 chr3R_5950001 RAL-227 944 chr3R 5989335 5989358 chr3R 5989418 5989438 5 82 0.5 2.5 1.5 2.0 103 chr3R 5989335 5` UTR CR44927 + chr3R 5989386 5` UTR CR44927 + chr3R 5989438 5` UTR CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-227 945 chr3R 6015966 6015990 chr3R 6024444 6024471 Tirant 4 8480 1.0 2.5 1.8 1.4 8505 chr3R 6015966 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024471 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-227 946 chr3R 6158515 6158535 chr3R 6167096 6167118 Tirant 6 8582 2.5 3.0 2.8 1.6 8603 chr3R 6158515 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167118 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-227 947 chr3R 6428808 6428841 chr3R 6428910 6428943 6 102 1.0 1.0 1.0 3.0 135 chr3R 6428808 intron gpp + chr3R 6428876 intron gpp + chr3R 6428943 intron gpp + chr3R_6_6425001 chr3R_6425001 RAL-227 948 chr3R 6461603 6461611 chr3R 6461683 6461690 4 80 1.0 3.5 2.2 1.2 87 chr3R 6461603 intergenic not near genes chr3R 6461646 intergenic not near genes chr3R 6461690 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-227 949 chr3R 6479935 6479969 chr3R 6480011 6480043 7 76 1.0 1.5 1.2 3.2 108 chr3R 6479935 intron CG15186 + chr3R 6479989 intron CG15186 + chr3R 6480043 intron CG15186 + chr3R_7_6475001 chr3R_6475001 RAL-227 950 chr3R 6523328 6523346 chr3R 6523704 6523722 4 376 4.0 2.0 3.0 1.0 394 chr3R 6523328 intergenic not near genes chr3R 6523525 intergenic not near genes chr3R 6523722 intergenic not near genes chr3R_4_6520001 chr3R_6520001 RAL-227 951 chr3R 6639917 6639934 chr3R 6639995 6640011 7 77 3.5 0.0 1.8 2.5 94 chr3R 6639917 intergenic not near genes chr3R 6639964 intergenic not near genes chr3R 6640011 intergenic not near genes chr3R_7_6635001 chr3R_6635001 RAL-227 952 chr3R 6689340 6689369 chr3R 6689422 6689439 8 80 3.0 0.5 1.8 2.9 99 chr3R 6689340 intergenic Ccp84Af - chr3R 6689390 intergenic Ccp84Af - chr3R 6689439 intergenic Ccp84Af - chr3R_8_6685001 chr3R_6685001 RAL-227 953 chr3R 6693654 6693673 chr3R 6693741 6693760 4 87 2.0 1.5 1.8 1.4 106 chr3R 6693654 intergenic Ccp84Ad + chr3R 6693707 intergenic Ccp84Ad + chr3R 6693760 intergenic Ccp84Ad + chr3R_4_6690001 chr3R_6690001 RAL-227 954 chr3R 6705685 6705710 chr3R 6705909 6705934 4 224 1.0 1.0 1.0 2.0 249 chr3R 6705685 intergenic not near genes chr3R 6705810 intergenic not near genes chr3R 6705934 intergenic not near genes chr3R_4_6705001 chr3R_6705001 RAL-227 955 chr3R 6759597 6759628 chr3R 6759673 6759704 7 76 1.5 2.0 1.8 2.5 107 chr3R 6759597 intergenic bcd - chr3R 6759650 intergenic bcd - chr3R 6759704 intergenic bcd - chr3R_7_6755001 chr3R_6755001 RAL-227 956 chr3R 6862226 6862248 chr3R 6862313 6862335 6 86 1.0 1.0 1.0 3.0 109 chr3R 6862226 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862335 intergenic not near genes chr3R_6_6860001 chr3R_6860001 RAL-227 957 chr3R 6912105 6912130 chr3R 6912216 6912241 10 111 1.5 1.0 1.2 4.5 136 chr3R 6912105 intron Antp - chr3R 6912173 intron Antp - chr3R 6912241 intron Antp - chr3R_10_6910001 chr3R_6910001 RAL-227 958 chr3R 6961182 6961199 chr3R 6961258 6961278 4 78 4.5 3.5 4.0 0.8 96 chr3R 6961182 intron Antp - chr3R 6961230 intron Antp - chr3R 6961278 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-227 959 chr3R 7026856 7026886 chr3R 7026942 7026963 6 83 3.0 0.5 1.8 2.1 107 chr3R 7026856 intergenic not near genes chr3R 7026910 intergenic not near genes chr3R 7026963 intergenic not near genes chr3R_6_7025001 chr3R_7025001 RAL-227 960 chr3R 7092783 7092816 chr3R 7093347 7093377 13 564 1.0 4.5 2.8 3.4 594 chr3R 7092783 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093377 3` UTR CR43685 - chr3R_13_7090001 chr3R_7090001 RAL-227 961 chr3R 7103284 7103312 chr3R 7103360 7103376 9 74 4.0 3.0 3.5 2.0 92 chr3R 7103284 intron Alh - chr3R 7103330 intron Alh - chr3R 7103376 intron Alh - chr3R_9_7100001 chr3R_7100001 RAL-227 962 chr3R 7385585 7385616 chr3R 7385661 7385692 8 68 1.0 0.5 0.8 4.4 107 chr3R 7385585 intergenic not near genes chr3R 7385638 intergenic not near genes chr3R 7385692 intergenic not near genes chr3R_8_7385001 chr3R_7385001 RAL-227 963 chr3R 7552967 7552993 chr3R 7553055 7553081 5 88 3.5 3.0 3.2 1.2 114 chr3R 7552967 intergenic not near genes chr3R 7553024 intergenic not near genes chr3R 7553081 intergenic not near genes chr3R_5_7550001 chr3R_7550001 RAL-227 964 chr3R 7677914 7677933 chr3R 7678027 7678046 5 111 1.0 2.0 1.5 2.0 132 chr3R 7677914 intron Nlg1 + chr3R 7677980 intron Nlg1 + chr3R 7678046 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-227 965 chr3R 7694582 7694610 chr3R 7713643 7713671 invader3 8 19061 1.0 2.5 1.8 2.9 19089 chr3R 7694582 3` UTR Nlg1 + chr3R 7704126 intergenic not near genes chr3R 7713671 intergenic not near genes chr3R_8_7700001 chr3R_7700001 RAL-227 966 chr3R 7729469 7729499 chr3R 7737407 7737435 Stalker2 12 7938 2.0 2.0 2.0 4.0 7966 chr3R 7729469 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737435 intergenic not near genes chr3R_12_7730001 chr3R_7730001 RAL-227 967 chr3R 7772281 7772299 chr3R 7772529 7772547 9 248 1.5 2.0 1.8 3.2 266 chr3R 7772281 intergenic not near genes chr3R 7772414 intergenic not near genes chr3R 7772547 intergenic not near genes chr3R_9_7770001 chr3R_7770001 RAL-227 968 chr3R 7956634 7956653 chr3R 7956727 7956746 6 93 2.0 3.0 2.5 1.7 112 chr3R 7956634 intron dsx - chr3R 7956690 intron dsx - chr3R 7956746 intron dsx - chr3R_6_7955001 chr3R_7955001 RAL-227 969 chr3R 7993204 7993223 chr3R 7993302 7993321 4 98 0.5 0.0 0.2 3.3 117 chr3R 7993204 intron CG2781 - chr3R 7993262 intron CG2781 - chr3R 7993321 intron CG2781 - chr3R_4_7990001 chr3R_7990001 RAL-227 970 chr3R 8094411 8094438 chr3R 8099713 8099743 Transpac 6 5304 1.5 0.5 1.0 3.0 5332 chr3R 8094411 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099743 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-227 971 chr3R 8101765 8101787 chr3R 8104849 8104871 G2 4 3079 0.5 1.0 0.8 2.2 3106 chr3R 8101765 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104871 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-227 972 chr3R 8144766 8144795 chr3R 8144850 8144865 4 80 2.5 0.0 1.2 1.8 99 chr3R 8144766 intergenic not near genes chr3R 8144816 intergenic not near genes chr3R 8144865 intergenic not near genes chr3R_4_8140001 chr3R_8140001 RAL-227 973 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568288 12.0 12.5 12.2 0.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-227 974 chr3R 8403016 8403035 chr3R 8412181 8412201 roo 11 9164 2.5 1.5 2.0 3.7 9185 chr3R 8403016 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412201 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-227 975 chr3R 8472516 8472537 chr3R 8472604 8472627 4 90 2.0 1.5 1.8 1.4 111 chr3R 8472516 intron CG45263 - chr3R 8472572 intron CG45263 - chr3R 8472627 intron CG45263 - chr3R_4_8470001 chr3R_8470001 RAL-227 976 chr3R 8475092 8475112 chr3R 8475172 8475192 8 80 4.0 2.5 3.2 1.9 100 chr3R 8475092 intron CG45263 - chr3R 8475142 intron CG45263 - chr3R 8475192 intron CG45263 - chr3R_8_8475001 chr3R_8475001 RAL-227 977 chr3R 8539203 8539222 chr3R 8539299 8539318 4 96 0.5 0.0 0.2 3.3 115 chr3R 8539203 intergenic not near genes chr3R 8539260 intergenic not near genes chr3R 8539318 intergenic not near genes chr3R_4_8535001 chr3R_8535001 RAL-227 978 chr3R 8570477 8570510 chr3R 8575113 8575136 HMS-Beagle 8 4632 3.0 3.0 3.0 2.0 4659 chr3R 8570477 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575136 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-227 979 chr3R 8601767 8601800 chr3R 8610920 8610953 roo 6 9152 2.5 1.5 2.0 2.0 9186 chr3R 8601767 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610953 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-227 980 chr3R 8690269 8690303 chr3R 8690355 8690387 10 83 0.5 2.0 1.2 4.5 118 chr3R 8690269 intergenic not near genes chr3R 8690328 intergenic not near genes chr3R 8690387 intergenic not near genes chr3R_10_8690001 chr3R_8690001 RAL-227 981 chr3R 8707364 8707386 chr3R 8709805 8709827 jockey 7 2440 3.5 4.5 4.0 1.4 2463 chr3R 8707364 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-227 982 chr3R 8740260 8740275 chr3R 8740348 8740363 8 88 1.0 4.0 2.5 2.3 103 chr3R 8740260 intron CG9801 - chr3R 8740312 intron CG9801 - chr3R 8740363 intron CG9801 - chr3R_8_8740001 chr3R_8740001 RAL-227 983 chr3R 8745760 8745771 chr3R 8745871 8745882 5 111 0.5 3.5 2.0 1.7 122 chr3R 8745760 intron CG9801 - chr3R 8745821 intron CG9801 - chr3R 8745882 intron CG9801 - chr3R_5_8745001 chr3R_8745001 RAL-227 984 chr3R 8756292 8756318 chr3R 8756367 8756393 4 75 2.0 1.5 1.8 1.4 101 chr3R 8756292 intron,intron CG11768 -,CG34135 - chr3R 8756342 intron,intron CG11768 -,CG34135 - chr3R 8756393 intron,intron CG11768 -,CG34135 - chr3R_4_8755001 chr3R_8755001 RAL-227 985 chr3R 8917896 8917911 chr3R 8917976 8917991 4 80 1.0 2.5 1.8 1.4 95 chr3R 8917896 intron pyd - chr3R 8917944 intron pyd - chr3R 8917991 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-227 986 chr3R 9036378 9036405 chr3R 9036456 9036483 4 78 3.0 2.0 2.5 1.1 105 chr3R 9036378 intron neur - chr3R 9036430 intron neur - chr3R 9036483 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-227 987 chr3R 9083144 9083170 chr3R 9083228 9083255 9 83 0.5 4.0 2.2 2.8 111 chr3R 9083144 intron pum - chr3R 9083200 intron pum - chr3R 9083255 intron pum - chr3R_9_9080001 chr3R_9080001 RAL-227 988 chr3R 9101837 9101870 chr3R 9101935 9101967 5 97 2.0 1.5 1.8 1.8 130 chr3R 9101837 intron pum - chr3R 9101902 intron pum - chr3R 9101967 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-227 989 chr3R 9141139 9141172 chr3R 9141223 9141256 8 83 2.5 4.0 3.2 1.9 117 chr3R 9141139 intron pum - chr3R 9141198 intron pum - chr3R 9141256 intron pum - chr3R_8_9140001 chr3R_9140001 RAL-227 990 chr3R 9251431 9251463 chr3R 9251511 9251543 4 80 1.0 2.0 1.5 1.6 112 chr3R 9251431 3` UTR CG8420 + chr3R 9251487 intergenic CG8420 +,St2 + chr3R 9251543 intergenic CG8420 +,St2 + chr3R_4_9250001 chr3R_9250001 RAL-227 991 chr3R 9304532 9304541 chr3R 9311819 9311825 Stalker4 4 7286 6.5 3.0 4.8 0.7 7293 chr3R 9304532 intron CG8861 - chr3R 9308178 intron CG8861 - chr3R 9311825 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-227 992 chr3R 9319580 9319599 chr3R 9320015 9320034 jockey 8 434 1.0 2.0 1.5 3.2 454 chr3R 9319580 intron CG8861 - chr3R 9319807 intron CG8861 - chr3R 9320034 intron CG8861 - chr3R_8_9315001 chr3R_9315001 RAL-227 993 chr3R 9382826 9382832 chr3R 9382951 9382957 5 124 4.5 2.5 3.5 1.1 131 chr3R 9382826 intron FER - chr3R 9382892 intron FER - chr3R 9382957 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-227 994 chr3R 9599812 9599841 chr3R 9599985 9600015 7 170 2.5 1.0 1.8 2.5 203 chr3R 9599812 intron CG8312 + chr3R 9599914 intron CG8312 + chr3R 9600015 intron CG8312 + chr3R_7_9595001 chr3R_9595001 RAL-227 995 chr3R 9608655 9608687 chr3R 9608921 9608953 5 266 1.5 2.0 1.8 1.8 298 chr3R 9608655 intron CG8312 + chr3R 9608804 intron CG8312 + chr3R 9608953 intron CG8312 + chr3R_5_9605001 chr3R_9605001 RAL-227 996 chr3R 9699973 9699995 chr3R 9700062 9700084 1360 5 89 2.5 2.0 2.2 1.6 111 chr3R 9699973 intron Unc-115a - chr3R 9700028 intron Unc-115a - chr3R 9700084 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-227 997 chr3R 9836873 9836896 chr3R 9836961 9836981 6 88 2.0 2.5 2.2 1.9 108 chr3R 9836873 intron Teh1 - chr3R 9836927 intron Teh1 - chr3R 9836981 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-227 998 chr3R 9898787 9898817 chr3R 9898879 9898907 7 90 1.5 2.0 1.8 2.5 120 chr3R 9898787 intron Glut4EF + chr3R 9898847 intron Glut4EF + chr3R 9898907 intron Glut4EF + chr3R_7_9895001 chr3R_9895001 RAL-227 999 chr3R 10306951 10306986 chr3R 10312210 10312245 11 5259 16.5 11.0 13.8 0.7 5294 chr3R 10306951 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312245 3` UTR Bruce - chr3R_11_10305001 chr3R_10305001 RAL-227 1000 chr3R 10417483 10417496 chr3R 10417818 10417825 5 334 4.5 1.0 2.8 1.3 342 chr3R 10417483 intergenic not near genes chr3R 10417654 intergenic not near genes chr3R 10417825 intergenic not near genes chr3R_5_10415001 chr3R_10415001 RAL-227 1001 chr3R 10599159 10599183 chr3R 10599241 10599265 8 82 1.0 2.0 1.5 3.2 106 chr3R 10599159 intron hth - chr3R 10599212 intron hth - chr3R 10599265 intron hth - chr3R_8_10595001 chr3R_10595001 RAL-227 1002 chr3R 10641608 10641625 chr3R 10641687 10641693 5 77 1.0 6.5 3.8 1.0 85 chr3R 10641608 5` UTR CR44018 + chr3R 10641650 5` UTR CR44018 + chr3R 10641693 5` UTR CR44018 + chr3R_5_10640001 chr3R_10640001 RAL-227 1003 chr3R 10723762 10723783 chr3R 10723854 10723875 6 92 4.0 0.0 2.0 2.0 113 chr3R 10723762 intergenic not near genes chr3R 10723818 intergenic not near genes chr3R 10723875 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-227 1004 chr3R 10727642 10727675 chr3R 10727721 10727744 10 78 1.0 2.0 1.5 4.0 102 chr3R 10727642 intergenic not near genes chr3R 10727693 intergenic not near genes chr3R 10727744 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-227 1005 chr3R 10804178 10804194 chr3R 10811710 10811726 17.6 4 7532 4.0 1.5 2.8 1.1 7548 chr3R 10804178 intergenic CG14692 - chr3R 10807952 intergenic not near genes chr3R 10811726 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-227 1006 chr3R 10868595 10868619 chr3R 10868673 10868679 6 74 1.5 2.0 1.8 2.1 84 chr3R 10868595 5` UTR SelR - chr3R 10868637 5` UTR SelR - chr3R 10868679 intergenic Tsp86D +,SelR - chr3R_6_10865001 chr3R_10865001 RAL-227 1007 chr3R 10904912 10904928 chr3R 10905116 10905132 8 204 2.5 0.5 1.5 3.2 220 chr3R 10904912 intergenic not near genes chr3R 10905022 intergenic not near genes chr3R 10905132 intergenic not near genes chr3R_8_10905001 chr3R_10905001 RAL-227 1008 chr3R 10906835 10906857 chr3R 10906911 10906932 5 75 0.5 2.5 1.5 2.0 97 chr3R 10906835 intergenic not near genes chr3R 10906884 intergenic not near genes chr3R 10906932 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-227 1009 chr3R 10919687 10919715 chr3R 10919765 10919790 5 77 1.5 2.5 2.0 1.7 103 chr3R 10919687 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919790 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-227 1010 chr3R 10920049 10920078 chr3R 10920127 10920156 5 78 1.5 3.0 2.2 1.6 107 chr3R 10920049 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-227 1011 chr3R 10957864 10957881 chr3R 10963253 10963254 Rt1c 4 5384 2.5 2.5 2.5 1.1 5390 chr3R 10957864 intergenic not near genes chr3R 10960559 intergenic not near genes chr3R 10963254 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-227 1012 chr3R 11085474 11085485 chr3R 11085551 11085560 4 76 0.5 0.5 0.5 2.7 86 chr3R 11085474 3` UTR CR44940 - chr3R 11085517 intergenic CR44940 - chr3R 11085560 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-227 1013 chr3R 11088671 11088692 chr3R 11088762 11088781 5 91 2.5 1.5 2.0 1.7 110 chr3R 11088671 exon CG43449 + chr3R 11088726 3` UTR CG43449 + chr3R 11088781 3` UTR CG43449 + chr3R_5_11085001 chr3R_11085001 RAL-227 1014 chr3R 11090841 11090878 chr3R 11090929 11090965 11 87 1.5 3.0 2.2 3.4 124 chr3R 11090841 intergenic not near genes chr3R 11090903 intergenic not near genes chr3R 11090965 intergenic not near genes chr3R_11_11090001 chr3R_11090001 RAL-227 1015 chr3R 11102322 11102352 chr3R 11102403 11102433 4 80 3.5 0.5 2.0 1.3 111 chr3R 11102322 intergenic not near genes chr3R 11102378 intergenic not near genes chr3R 11102433 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-227 1016 chr3R 11157073 11157103 chr3R 11157164 11157189 9 90 3.0 0.5 1.8 3.2 116 chr3R 11157073 intergenic Ugt86Da + chr3R 11157131 5` UTR Ugt86Da + chr3R 11157189 5` UTR Ugt86Da + chr3R_9_11155001 chr3R_11155001 RAL-227 1017 chr3R 11294477 11294497 chr3R 11294786 11294808 4 310 1.5 2.5 2.0 1.3 331 chr3R 11294477 intron CR31386 - chr3R 11294642 intron CR31386 - chr3R 11294808 intron CR31386 - chr3R_4_11290001 chr3R_11290001 RAL-227 1018 chr3R 11307200 11307222 chr3R 11307286 11307309 6 86 2.0 3.0 2.5 1.7 109 chr3R 11307200 intergenic not near genes chr3R 11307254 intergenic not near genes chr3R 11307309 intergenic not near genes chr3R_6_11305001 chr3R_11305001 RAL-227 1019 chr3R 11379236 11379264 chr3R 11388391 11388419 roo 8 9155 3.0 2.5 2.8 2.1 9183 chr3R 11379236 intron pros + chr3R 11383828 intron pros + chr3R 11388419 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-227 1020 chr3R 11476952 11476963 chr3R 11477054 11477065 5 102 2.5 2.5 2.5 1.4 113 chr3R 11476952 intergenic not near genes chr3R 11477008 intergenic not near genes chr3R 11477065 intergenic not near genes chr3R_5_11475001 chr3R_11475001 RAL-227 1021 chr3R 11518817 11518846 chr3R 11518908 11518911 10 88 3.5 4.0 3.8 2.1 94 chr3R 11518817 intergenic not near genes chr3R 11518864 intergenic not near genes chr3R 11518911 intergenic not near genes chr3R_10_11515001 chr3R_11515001 RAL-227 1022 chr3R 11558343 11558374 chr3R 11560679 11560710 10 2334 15.5 10.5 13.0 0.7 2367 chr3R 11558343 5` UTR CG10898 + chr3R 11559526 exon CG10898 + chr3R 11560710 3` UTR,exon fabp -,sea - chr3R_10_11555001 chr3R_11555001 RAL-227 1023 chr3R 11557362 11557383 chr3R 11561985 11562006 5 4623 12.0 24.5 18.2 0.3 4644 chr3R 11557362 intergenic CG10898 + chr3R 11559684 3` UTR CG10898 + chr3R 11562006 intron,intron fabp -,sea - chr3R_5_11555001 chr3R_11555001 RAL-227 1024 chr3R 11571818 11571846 chr3R 11571914 11571942 5 96 0.5 0.0 0.2 4.2 124 chr3R 11571818 intron Mrp4 + chr3R 11571880 intron Mrp4 + chr3R 11571942 intron Mrp4 + chr3R_5_11570001 chr3R_11570001 RAL-227 1025 chr3R 11589762 11589792 chr3R 11589860 11589895 6 100 1.5 3.0 2.2 1.9 133 chr3R 11589762 exon CG6791 - chr3R 11589828 5` UTR CG6791 - chr3R 11589895 5` UTR CG6791 - chr3R_6_11585001 chr3R_11585001 RAL-227 1026 chr3R 11664791 11664815 chr3R 11664883 11664906 4 92 1.0 2.0 1.5 1.6 115 chr3R 11664791 intron CG42327 + chr3R 11664848 intron CG42327 + chr3R 11664906 intron CG42327 + chr3R_4_11660001 chr3R_11660001 RAL-227 1027 chr3R 11734164 11734183 chr3R 11734282 11734302 8 118 1.0 0.5 0.8 4.4 138 chr3R 11734164 intergenic not near genes chr3R 11734233 intergenic not near genes chr3R 11734302 intergenic not near genes chr3R_8_11730001 chr3R_11730001 RAL-227 1028 chr3R 11763934 11763944 chr3R 11764014 11764023 4 80 3.0 4.5 3.8 0.8 89 chr3R 11763934 5` UTR Lk6 - chr3R 11763978 5` UTR Lk6 - chr3R 11764023 5` UTR Lk6 - chr3R_4_11760001 chr3R_11760001 RAL-227 1029 chr3R 11830351 11830354 chr3R 11830435 11830438 4 84 1.0 3.0 2.0 1.3 87 chr3R 11830351 intron CG6959 - chr3R 11830394 intron CG6959 - chr3R 11830438 intron CG6959 - chr3R_4_11830001 chr3R_11830001 RAL-227 1030 chr3R 11841059 11841094 chr3R 11846250 11846285 BS 8 5190 2.0 4.0 3.0 2.0 5226 chr3R 11841059 intron CG6959 - chr3R 11843672 intron CG6959 - chr3R 11846285 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-227 1031 chr3R 11853463 11853473 chr3R 11853610 11853620 4 147 0.0 5.0 2.5 1.1 157 chr3R 11853463 intron CG6959 - chr3R 11853542 intron CG6959 - chr3R 11853620 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-227 1032 chr3R 11853767 11853802 chr3R 11853872 11853901 9 104 2.0 1.0 1.5 3.6 134 chr3R 11853767 intron CG6959 - chr3R 11853834 intron CG6959 - chr3R 11853901 intron CG6959 - chr3R_9_11850001 chr3R_11850001 RAL-227 1033 chr3R 12080875 12080892 chr3R 12080948 12080970 4 76 4.0 2.0 3.0 1.0 95 chr3R 12080875 intron CG14741 - chr3R 12080922 intron CG14741 - chr3R 12080970 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-227 1034 chr3R 12214351 12214366 chr3R 12214436 12214455 6 88 6.0 2.5 4.2 1.2 104 chr3R 12214351 3` UTR CG4848 - chr3R 12214403 3` UTR CG4848 - chr3R 12214455 3` UTR CG4848 - chr3R_6_12210001 chr3R_12210001 RAL-227 1035 chr3R 12247148 12247173 chr3R 12247233 12247258 6 85 2.0 2.5 2.2 1.9 110 chr3R 12247148 intergenic not near genes chr3R 12247203 intergenic not near genes chr3R 12247258 intergenic not near genes chr3R_6_12245001 chr3R_12245001 RAL-227 1036 chr3R 12299813 12299835 chr3R 12299906 12299928 6 90 2.0 5.0 3.5 1.3 115 chr3R 12299813 intron svp + chr3R 12299870 intron svp + chr3R 12299928 intron svp + chr3R_6_12295001 chr3R_12295001 RAL-227 1037 chr3R 12314226 12314254 chr3R 12314340 12314368 10 114 1.0 1.5 1.2 4.5 142 chr3R 12314226 intergenic not near genes chr3R 12314297 intergenic not near genes chr3R 12314368 intergenic not near genes chr3R_10_12310001 chr3R_12310001 RAL-227 1038 chr3R 12328161 12328190 chr3R 12328272 12328294 4 107 4.0 0.0 2.0 1.3 133 chr3R 12328161 intergenic CR45584 + chr3R 12328228 intergenic CR45584 + chr3R 12328294 intergenic CR45584 + chr3R_4_12325001 chr3R_12325001 RAL-227 1039 chr3R 12392891 12392900 chr3R 12392991 12392999 4 100 3.0 2.5 2.8 1.1 108 chr3R 12392891 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392945 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392999 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-227 1040 chr3R 12436454 12436484 chr3R 12436541 12436562 7 86 1.5 0.5 1.0 3.5 108 chr3R 12436454 exon Desat2 + chr3R 12436508 exon Desat2 + chr3R 12436562 exon Desat2 + chr3R_7_12435001 chr3R_12435001 RAL-227 1041 chr3R 12520692 12520707 chr3R 12520780 12520795 8 87 4.0 3.5 3.8 1.7 103 chr3R 12520692 intron Octbeta3R - chr3R 12520744 intron Octbeta3R - chr3R 12520795 intron Octbeta3R - chr3R_8_12520001 chr3R_12520001 RAL-227 1042 chr3R 12685431 12685450 chr3R 12685600 12685622 5 168 1.5 2.5 2.0 1.7 191 chr3R 12685431 intron kar - chr3R 12685526 intron kar - chr3R 12685622 intron kar - chr3R_5_12685001 chr3R_12685001 RAL-227 1043 chr3R 12733490 12733501 chr3R 12733567 12733578 4 76 3.0 6.5 4.8 0.7 88 chr3R 12733490 intergenic not near genes chr3R 12733534 intergenic not near genes chr3R 12733578 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-227 1044 chr3R 12766416 12766440 chr3R 12766499 12766523 7 81 1.5 2.0 1.8 2.5 107 chr3R 12766416 intron beat-Vc - chr3R 12766470 intron beat-Vc - chr3R 12766523 intron beat-Vc - chr3R_7_12765001 chr3R_12765001 RAL-227 1045 chr3R 12819030 12819050 chr3R 12819113 12819133 5 83 1.0 1.5 1.2 2.3 103 chr3R 12819030 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819133 intergenic not near genes chr3R_5_12815001 chr3R_12815001 RAL-227 1046 chr3R 12866492 12866512 chr3R 12866643 12866663 4 151 1.0 1.0 1.0 2.0 171 chr3R 12866492 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866663 intergenic not near genes chr3R_4_12865001 chr3R_12865001 RAL-227 1047 chr3R 12920164 12920185 chr3R 12925367 12925386 copia 6 5203 1.0 3.5 2.2 1.9 5222 chr3R 12920164 intron beat-Vb + chr3R 12922775 intron beat-Vb + chr3R 12925386 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-227 1048 chr3R 12972557 12972582 chr3R 12972696 12972721 5 139 2.5 1.0 1.8 1.8 164 chr3R 12972557 intron CG7381 - chr3R 12972639 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_5_12970001 chr3R_12970001 RAL-227 1049 chr3R 13067846 13067863 chr3R 13067926 13067943 4 80 3.5 3.0 3.2 1.0 97 chr3R 13067846 intron sim + chr3R 13067894 intron sim + chr3R 13067943 intron sim + chr3R_4_13065001 chr3R_13065001 RAL-227 1050 chr3R 13075367 13075381 chr3R 13075448 13075462 6 81 1.5 0.5 1.0 3.0 95 chr3R 13075367 intron sim + chr3R 13075414 intron sim + chr3R 13075462 intron sim + chr3R_6_13075001 chr3R_13075001 RAL-227 1051 chr3R 13435387 13435414 chr3R 13435562 13435587 9 175 2.0 2.5 2.2 2.8 200 chr3R 13435387 intergenic yrt - chr3R 13435487 intergenic not near genes chr3R 13435587 intergenic not near genes chr3R_9_13435001 chr3R_13435001 RAL-227 1052 chr3R 13603062 13603344 chr3R 13603153 13603435 4 91 3.5 2.0 2.8 1.1 373 chr3R 13603062 intergenic not near genes chr3R 13603248 intergenic not near genes chr3R 13603435 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-227 1053 chr3R 13604063 13604091 chr3R 13604297 13604326 4 234 0.5 1.0 0.8 2.2 263 chr3R 13604063 intergenic not near genes chr3R 13604194 intergenic not near genes chr3R 13604326 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-227 1054 chr3R 13606704 13606723 chr3R 13606851 13606870 4 147 3.0 0.5 1.8 1.4 166 chr3R 13606704 intergenic CG9759 - chr3R 13606787 intergenic CG9759 - chr3R 13606870 intergenic CG9759 - chr3R_4_13605001 chr3R_13605001 RAL-227 1055 chr3R 13625697 13625720 chr3R 13625778 13625801 5 81 0.5 1.0 0.8 2.8 104 chr3R 13625697 intergenic not near genes chr3R 13625749 intergenic not near genes chr3R 13625801 intergenic not near genes chr3R_5_13625001 chr3R_13625001 RAL-227 1056 chr3R 13691362 13691383 chr3R 13691438 13691459 5 76 2.5 5.0 3.8 1.0 97 chr3R 13691362 intron flfl + chr3R 13691410 intron flfl + chr3R 13691459 intron flfl + chr3R_5_13690001 chr3R_13690001 RAL-227 1057 chr3R 13782055 13782089 chr3R 13782134 13782170 6 80 1.5 1.5 1.5 2.4 115 chr3R 13782055 exon CG9286 + chr3R 13782112 intergenic CG9286 +,Dip-B + chr3R 13782170 intergenic CG9286 +,Dip-B + chr3R_6_13780001 chr3R_13780001 RAL-227 1058 chr3R 13863679 13863716 chr3R 13863766 13863803 8 88 3.0 3.0 3.0 2.0 124 chr3R 13863679 intergenic not near genes chr3R 13863741 intergenic not near genes chr3R 13863803 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-227 1059 chr3R 13946524 13946546 chr3R 13946625 13946647 8 98 2.5 3.0 2.8 2.1 123 chr3R 13946524 intergenic not near genes chr3R 13946586 intergenic not near genes chr3R 13946647 intergenic not near genes chr3R_8_13945001 chr3R_13945001 RAL-227 1060 chr3R 14021658 14021670 chr3R 14023475 14023487 S-element 4 1817 2.5 2.5 2.5 1.1 1829 chr3R 14021658 intron rdx - chr3R 14022572 intron rdx - chr3R 14023487 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-227 1061 chr3R 14058125 14058150 chr3R 14058245 14058270 6 120 0.0 0.5 0.2 5.0 145 chr3R 14058125 intron foxo + chr3R 14058198 intron foxo + chr3R 14058270 intron foxo + chr3R_6_14055001 chr3R_14055001 RAL-227 1062 chr3R 14062166 14062197 chr3R 14062241 14062266 8 75 1.5 3.5 2.5 2.3 100 chr3R 14062166 intron foxo + chr3R 14062216 intron foxo + chr3R 14062266 intron foxo + chr3R_8_14060001 chr3R_14060001 RAL-227 1063 chr3R 14067141 14067151 chr3R 14067220 14067230 4 79 2.0 0.5 1.2 1.8 89 chr3R 14067141 exon foxo + chr3R 14067186 intron foxo + chr3R 14067230 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-227 1064 chr3R 14194429 14194456 chr3R 14203578 14203605 roo 7 9149 5.5 5.5 5.5 1.1 9176 chr3R 14194429 intron Dop1R1 - chr3R 14199017 intron Dop1R1 - chr3R 14203605 intron Dop1R1 - chr3R_7_14195001 chr3R_14195001 RAL-227 1065 chr3R 14246397 14246418 chr3R 14247891 14247913 jockey 4 1495 2.0 2.5 2.2 1.2 1516 chr3R 14246397 intergenic not near genes chr3R 14247155 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-227 1066 chr3R 14363725 14363754 chr3R 14363807 14363836 9 82 0.5 2.0 1.2 4.1 111 chr3R 14363725 intron NK7.1 - chr3R 14363780 intron NK7.1 - chr3R 14363836 intron NK7.1 - chr3R_9_14360001 chr3R_14360001 RAL-227 1067 chr3R 14454346 14454355 chr3R 14454477 14454486 5 131 1.0 4.5 2.8 1.3 140 chr3R 14454346 intron cv-c - chr3R 14454416 intron cv-c - chr3R 14454486 intron cv-c - chr3R_5_14450001 chr3R_14450001 RAL-227 1068 chr3R 14527406 14527414 chr3R 14527483 14527490 4 76 1.0 3.0 2.0 1.3 84 chr3R 14527406 intron Pde6 - chr3R 14527448 intron Pde6 - chr3R 14527490 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-227 1069 chr3R 14577957 14577982 chr3R 14578073 14578098 5 116 2.0 1.0 1.5 2.0 141 chr3R 14577957 intron stumps + chr3R 14578028 intron stumps + chr3R 14578098 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-227 1070 chr3R 14579351 14579374 chr3R 14579435 14579463 5 88 3.5 3.0 3.2 1.2 112 chr3R 14579351 intron stumps + chr3R 14579407 intron stumps + chr3R 14579463 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-227 1071 chr3R 14662322 14662333 chr3R 14662403 14662414 6 81 5.0 3.0 4.0 1.2 92 chr3R 14662322 intron Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662414 exon Rad17 - chr3R_6_14660001 chr3R_14660001 RAL-227 1072 chr3R 14704383 14704418 chr3R 14704460 14704494 10 77 1.0 2.5 1.8 3.6 111 chr3R 14704383 intron kibra - chr3R 14704438 intron kibra - chr3R 14704494 intron kibra - chr3R_10_14700001 chr3R_14700001 RAL-227 1073 chr3R 14775999 14776033 chr3R 14776090 14776124 12 90 1.5 2.0 1.8 4.3 125 chr3R 14775999 intron jvl + chr3R 14776062 intron jvl + chr3R 14776124 intron jvl + chr3R_12_14775001 chr3R_14775001 RAL-227 1074 chr3R 14779070 14779096 chr3R 14779150 14779176 6 80 2.0 3.0 2.5 1.7 106 chr3R 14779070 intron jvl + chr3R 14779123 intron jvl + chr3R 14779176 intron jvl + chr3R_6_14775001 chr3R_14775001 RAL-227 1075 chr3R 14876350 14876385 chr3R 14876713 14876748 9 363 1.0 0.5 0.8 5.0 398 chr3R 14876350 intergenic not near genes chr3R 14876549 intergenic not near genes chr3R 14876748 intergenic not near genes chr3R_9_14875001 chr3R_14875001 RAL-227 1076 chr3R 14951770 14951779 chr3R 14952374 14952383 4 604 0.5 0.0 0.2 3.3 613 chr3R 14951770 intergenic not near genes chr3R 14952076 intergenic not near genes chr3R 14952383 intergenic not near genes chr3R_4_14950001 chr3R_14950001 RAL-227 1077 chr3R 14980025 14980049 chr3R 14980130 14980156 4 106 2.0 3.5 2.8 1.1 131 chr3R 14980025 intergenic not near genes chr3R 14980090 intergenic not near genes chr3R 14980156 intergenic not near genes chr3R_4_14980001 chr3R_14980001 RAL-227 1078 chr3R 15026339 15026342 chr3R 15026425 15026428 4 86 2.0 2.0 2.0 1.3 89 chr3R 15026339 intergenic not near genes chr3R 15026384 intergenic not near genes chr3R 15026428 intergenic not near genes chr3R_4_15025001 chr3R_15025001 RAL-227 1079 chr3R 15045517 15045551 chr3R 15045702 15045736 12 184 2.5 0.5 1.5 4.8 219 chr3R 15045517 intergenic not near genes chr3R 15045626 intergenic not near genes chr3R 15045736 intergenic not near genes chr3R_12_15045001 chr3R_15045001 RAL-227 1080 chr3R 15058232 15058248 chr3R 15058305 15058329 5 82 0.5 1.5 1.0 2.5 97 chr3R 15058232 intron dpr9 - chr3R 15058280 intron dpr9 - chr3R 15058329 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-227 1081 chr3R 15079810 15079830 chr3R 15080051 15080071 pogo 4 241 3.0 0.5 1.8 1.4 261 chr3R 15079810 3` UTR CG6966 - chr3R 15079940 3` UTR CG6966 - chr3R 15080071 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-227 1082 chr3R 15087751 15087760 chr3R 15087835 15087844 6 84 3.5 0.0 1.8 2.1 93 chr3R 15087751 intron CG6966 - chr3R 15087798 intron CG6966 - chr3R 15087844 intron CG6966 - chr3R_6_15085001 chr3R_15085001 RAL-227 1083 chr3R 15114914 15114944 chr3R 15114991 15115021 6 77 3.5 0.5 2.0 2.0 107 chr3R 15114914 intron CG42788 - chr3R 15114968 intron CG42788 - chr3R 15115021 intron CG42788 - chr3R_6_15110001 chr3R_15110001 RAL-227 1084 chr3R 15143925 15143954 chr3R 15144108 15144137 8 183 1.0 3.0 2.0 2.7 212 chr3R 15143925 intron GlyS - chr3R 15144031 intron GlyS - chr3R 15144137 intron GlyS - chr3R_8_15140001 chr3R_15140001 RAL-227 1085 chr3R 15416248 15416284 chr3R 15416328 15416364 6 80 1.5 2.0 1.8 2.1 116 chr3R 15416248 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-227 1086 chr3R 15571258 15571498 chr3R 15571351 15571588 12 95 1.5 2.5 2.0 4.0 330 chr3R 15571258 intergenic not near genes chr3R 15571423 intergenic not near genes chr3R 15571588 intergenic not near genes chr3R_12_15570001 chr3R_15570001 RAL-227 1087 chr3R 15601193 15601196 chr3R 15608714 15608718 412 5 7522 1.0 4.5 2.8 1.3 7525 chr3R 15601193 intergenic not near genes chr3R 15604956 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-227 1088 chr3R 15691188 15691321 chr3R 15691293 15691407 4 91 0.0 0.0 0.0 4.0 219 chr3R 15691188 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691407 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-227 1089 chr3R 15778556 15778589 chr3R 15778633 15778666 4 75 1.0 1.5 1.2 1.8 110 chr3R 15778556 intergenic not near genes chr3R 15778611 intergenic not near genes chr3R 15778666 intergenic not near genes chr3R_4_15775001 chr3R_15775001 RAL-227 1090 chr3R 15871405 15871439 chr3R 15871504 15871537 10 97 2.0 1.0 1.5 4.0 132 chr3R 15871405 intron CG31183 - chr3R 15871471 intron CG31183 - chr3R 15871537 intron CG31183 - chr3R_10_15870001 chr3R_15870001 RAL-227 1091 chr3R 16472582 16472597 chr3R 16472657 16472673 8 75 5.0 3.5 4.2 1.5 91 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472673 5` UTR Gyc-89Da + chr3R_8_16470001 chr3R_16470001 RAL-227 1092 chr3R 16756321 16756354 chr3R 16762512 16762527 diver 11 6189 0.0 1.0 0.5 7.3 6206 chr3R 16756321 intron bxd - chr3R 16759424 intron bxd - chr3R 16762527 intron bxd - chr3R_11_16755001 chr3R_16755001 RAL-227 1093 chr3R 16762774 16762791 chr3R 16763037 16763054 4 263 1.0 2.0 1.5 1.6 280 chr3R 16762774 intron bxd - chr3R 16762914 intron bxd - chr3R 16763054 intron bxd - chr3R_4_16760001 chr3R_16760001 RAL-227 1094 chr3R 16860344 16860365 chr3R 16860422 16860443 7 77 0.0 0.5 0.2 5.8 99 chr3R 16860344 intron iab-8 - chr3R 16860394 intron iab-8 - chr3R 16860443 intron iab-8 - chr3R_7_16860001 chr3R_16860001 RAL-227 1095 chr3R 17184737 17184745 chr3R 17184813 17184821 4 76 1.5 0.5 1.0 2.0 84 chr3R 17184737 intron Mur89F - chr3R 17184779 intron Mur89F - chr3R 17184821 intron Mur89F - chr3R_4_17180001 chr3R_17180001 RAL-227 1096 chr3R 17214025 17214056 chr3R 17214101 17214132 4 76 1.0 1.0 1.0 2.0 107 chr3R 17214025 intergenic not near genes chr3R 17214078 intergenic not near genes chr3R 17214132 intergenic not near genes chr3R_4_17210001 chr3R_17210001 RAL-227 1097 chr3R 17294679 17294695 chr3R 17295107 17295123 BS 6 428 3.0 4.5 3.8 1.2 444 chr3R 17294679 intergenic not near genes chr3R 17294901 intergenic not near genes chr3R 17295123 intergenic not near genes chr3R_6_17290001 chr3R_17290001 RAL-227 1098 chr3R 17312823 17312842 chr3R 17312901 17312927 7 84 1.5 1.5 1.5 2.8 104 chr3R 17312823 intergenic not near genes chr3R 17312875 intergenic not near genes chr3R 17312927 intergenic not near genes chr3R_7_17310001 chr3R_17310001 RAL-227 1099 chr3R 17342890 17342916 chr3R 17342974 17343000 5 84 1.5 1.5 1.5 2.0 110 chr3R 17342890 intron beat-IIa - chr3R 17342945 intron beat-IIa - chr3R 17343000 intron beat-IIa - chr3R_5_17340001 chr3R_17340001 RAL-227 1100 chr3R 17346700 17346711 chr3R 17348263 17348274 F-element 4 1563 4.0 3.0 3.5 0.9 1574 chr3R 17346700 intron beat-IIa - chr3R 17347487 intron beat-IIa - chr3R 17348274 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-227 1101 chr3R 17355493 17355519 chr3R 17355571 17355591 5 77 2.5 1.5 2.0 1.7 98 chr3R 17355493 intron beat-IIa - chr3R 17355542 intron beat-IIa - chr3R 17355591 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-227 1102 chr3R 17382709 17382739 chr3R 17382786 17382815 7 77 1.5 2.0 1.8 2.5 106 chr3R 17382709 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R 17382762 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R 17382815 intron,intron Brf -,lute + chr3R_7_17380001 chr3R_17380001 RAL-227 1103 chr3R 17407003 17407022 chr3R 17407105 17407124 5 102 0.0 2.0 1.0 2.5 121 chr3R 17407003 intron CG42798 + chr3R 17407064 5` UTR CG42798 + chr3R 17407124 exon CG42798 + chr3R_5_17405001 chr3R_17405001 RAL-227 1104 chr3R 17638316 17638349 chr3R 17638802 17638835 roo 9 486 0.5 3.5 2.0 3.0 519 chr3R 17638316 intron CG43175 + chr3R 17638576 intron CG43175 + chr3R 17638835 intron,intron CG43175 +,CR45222 + chr3R_9_17635001 chr3R_17635001 RAL-227 1105 chr3R 17759235 17759252 chr3R 17759492 17759509 4 256 2.5 3.0 2.8 1.1 274 chr3R 17759235 intron TyrR - chr3R 17759372 intron TyrR - chr3R 17759509 intron TyrR - chr3R_4_17755001 chr3R_17755001 RAL-227 1106 chr3R 17823218 17823234 chr3R 17823303 17823319 5 85 2.0 2.0 2.0 1.7 101 chr3R 17823218 intron tinc + chr3R 17823268 intron tinc + chr3R 17823319 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-227 1107 chr3R 17925853 17925877 chr3R 17927320 17927343 hobo 7 1466 1.5 5.5 3.5 1.6 1490 chr3R 17925853 intron cpo + chr3R 17926598 intron cpo + chr3R 17927343 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-227 1108 chr3R 18025337 18025365 chr3R 18025414 18025446 6 80 1.0 1.0 1.0 3.0 109 chr3R 18025337 3` UTR CG7794 + chr3R 18025392 intergenic CG7794 + chr3R 18025446 intergenic CG7794 + chr3R_6_18025001 chr3R_18025001 RAL-227 1109 chr3R 18052289 18052311 chr3R 18052398 18052420 5 109 1.0 2.0 1.5 2.0 131 chr3R 18052289 intron htl - chr3R 18052354 intron htl - chr3R 18052420 intron htl - chr3R_5_18050001 chr3R_18050001 RAL-227 1110 chr3R 18060319 18060350 chr3R 18060413 18060444 5 94 1.5 1.0 1.2 2.3 125 chr3R 18060319 intergenic not near genes chr3R 18060382 intergenic not near genes chr3R 18060444 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-227 1111 chr3R 18068001 18068016 chr3R 18068083 18068097 5 82 0.0 1.5 0.8 2.8 96 chr3R 18068001 intergenic not near genes chr3R 18068049 intergenic not near genes chr3R 18068097 intergenic not near genes chr3R_5_18065001 chr3R_18065001 RAL-227 1112 chr3R 18120895 18120916 chr3R 18120971 18120992 4 76 1.0 0.0 0.5 2.7 97 chr3R 18120895 intron sr + chr3R 18120944 intron sr + chr3R 18120992 intron sr + chr3R_4_18120001 chr3R_18120001 RAL-227 1113 chr3R 18237563 18237597 chr3R 18237654 18237688 5 91 1.5 0.5 1.0 2.5 125 chr3R 18237563 intron repo + chr3R 18237626 intron repo + chr3R 18237688 intron repo + chr3R_5_18235001 chr3R_18235001 RAL-227 1114 chr3R 18268996 18269016 chr3R 18269131 18269151 4 135 2.0 3.5 2.8 1.1 155 chr3R 18268996 intron CG18599 + chr3R 18269074 intron CG18599 + chr3R 18269151 intron CG18599 + chr3R_4_18265001 chr3R_18265001 RAL-227 1115 chr3R 18342019 18342042 chr3R 18342097 18342120 8 76 1.0 2.5 1.8 2.9 101 chr3R 18342019 intron CG15803 - chr3R 18342070 intron CG15803 - chr3R 18342120 intron CG15803 - chr3R_8_18340001 chr3R_18340001 RAL-227 1116 chr3R 18358383 18358413 chr3R 18358461 18358490 5 78 1.5 2.5 2.0 1.7 107 chr3R 18358383 intron CG15803 - chr3R 18358436 intron CG15803 - chr3R 18358490 intron CG15803 - chr3R_5_18355001 chr3R_18355001 RAL-227 1117 chr3R 18559507 18559518 chr3R 18559654 18559666 4 148 0.0 1.0 0.5 2.7 159 chr3R 18559507 intergenic CG7691 + chr3R 18559586 intergenic CG7691 + chr3R 18559666 intergenic CG7691 + chr3R_4_18555001 chr3R_18555001 RAL-227 1118 chr3R 18664104 18664117 chr3R 18664181 18664194 8 77 0.0 3.0 1.5 3.2 90 chr3R 18664104 intron Gos28 + chr3R 18664149 intron Gos28 + chr3R 18664194 intron Gos28 + chr3R_8_18660001 chr3R_18660001 RAL-227 1119 chr3R 18781694 18781722 chr3R 18781770 18781796 5 75 0.5 0.0 0.2 4.2 102 chr3R 18781694 intron CG7720 - chr3R 18781745 intron CG7720 - chr3R 18781796 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-227 1120 chr3R 18785865 18785901 chr3R 18785942 18785977 6 73 3.0 0.5 1.8 2.1 112 chr3R 18785865 intron CG7720 - chr3R 18785921 intron CG7720 - chr3R 18785977 intron CG7720 - chr3R_6_18785001 chr3R_18785001 RAL-227 1121 chr3R 18791499 18791508 chr3R 18791575 18791581 4 76 0.5 0.5 0.5 2.7 82 chr3R 18791499 intron CG7720 - chr3R 18791540 intron CG7720 - chr3R 18791581 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-227 1122 chr3R 18812074 18812109 chr3R 18812152 18812187 10 78 3.0 3.0 3.0 2.5 113 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-227 1123 chr3R 18839824 18839833 chr3R 18839908 18839917 4 84 3.0 4.0 3.5 0.9 93 chr3R 18839824 intron CG18208 - chr3R 18839870 intron CG18208 - chr3R 18839917 intron CG18208 - chr3R_4_18835001 chr3R_18835001 RAL-227 1124 chr3R 18988531 18988560 chr3R 18988790 18988812 6 258 1.5 3.0 2.2 1.9 281 chr3R 18988531 intron gukh + chr3R 18988672 intron gukh + chr3R 18988812 intron gukh + chr3R_6_18985001 chr3R_18985001 RAL-227 1125 chr3R 18991399 18991413 chr3R 18991473 18991490 5 76 3.0 4.0 3.5 1.1 91 chr3R 18991399 intron gukh + chr3R 18991444 intron gukh + chr3R 18991490 intron gukh + chr3R_5_18990001 chr3R_18990001 RAL-227 1126 chr3R 19117063 19117081 chr3R 19117207 19117216 6 142 4.5 0.0 2.2 1.9 153 chr3R 19117063 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117216 intron CG6040 + chr3R_6_19115001 chr3R_19115001 RAL-227 1127 chr3R 19136409 19136414 chr3R 19139797 19139802 Bari1 4 3387 28.0 15.5 21.8 0.2 3393 chr3R 19136409 exon Cyp12a4 + chr3R 19138106 intergenic not near genes chr3R 19139802 3` UTR Ppcs - chr3R_4_19135001 chr3R_19135001 RAL-227 1128 chr3R 19274320 19274341 chr3R 19274409 19274414 6 84 3.5 0.5 2.0 2.0 94 chr3R 19274320 intergenic not near genes chr3R 19274367 intergenic not near genes chr3R 19274414 intergenic not near genes chr3R_6_19270001 chr3R_19270001 RAL-227 1129 chr3R 19340408 19340416 chr3R 19340476 19340493 4 74 3.0 4.5 3.8 0.8 85 chr3R 19340408 intergenic not near genes chr3R 19340450 intergenic not near genes chr3R 19340493 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-227 1130 chr3R 19344673 19344693 chr3R 19344800 19344828 5 133 2.0 1.0 1.5 2.0 155 chr3R 19344673 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344828 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-227 1131 chr3R 19509004 19509032 chr3R 19509090 19509114 5 85 1.5 1.5 1.5 2.0 110 chr3R 19509004 intron Dys + chr3R 19509059 intron Dys + chr3R 19509114 intron Dys + chr3R_5_19505001 chr3R_19505001 RAL-227 1132 chr3R 19561824 19561856 chr3R 19561900 19561926 9 71 1.0 1.5 1.2 4.1 102 chr3R 19561824 intron Dys + chr3R 19561875 intron Dys + chr3R 19561926 intron Dys + chr3R_9_19560001 chr3R_19560001 RAL-227 1133 chr3R 19575862 19575872 chr3R 19575967 19575977 6 106 0.0 1.0 0.5 4.0 115 chr3R 19575862 intron Dys + chr3R 19575920 intron Dys + chr3R 19575977 intron Dys + chr3R_6_19575001 chr3R_19575001 RAL-227 1134 chr3R 19716224 19716248 chr3R 19716301 19716325 6 77 0.0 0.0 0.0 6.0 101 chr3R 19716224 intergenic CG34286 - chr3R 19716274 intergenic CG34286 - chr3R 19716325 intergenic CG34286 - chr3R_6_19715001 chr3R_19715001 RAL-227 1135 chr3R 19783008 19783040 chr3R 19783121 19783157 5 115 1.0 1.5 1.2 2.3 149 chr3R 19783008 exon CG11407 + chr3R 19783082 3` UTR CG11407 + chr3R 19783157 intergenic CG11407 +,CG11453 + chr3R_5_19780001 chr3R_19780001 RAL-227 1136 chr3R 19859964 19859978 chr3R 19860043 19860054 6 80 4.5 2.0 3.2 1.4 90 chr3R 19859964 intron Ire1 - chr3R 19860009 intron Ire1 - chr3R 19860054 intron Ire1 - chr3R_6_19860001 chr3R_19860001 RAL-227 1137 chr3R 19943888 19943897 chr3R 19943968 19943977 5 80 4.5 0.0 2.2 1.6 89 chr3R 19943888 intron Hs6st - chr3R 19943932 intron Hs6st - chr3R 19943977 intron Hs6st - chr3R_5_19940001 chr3R_19940001 RAL-227 1138 chr3R 19955074 19955106 chr3R 19956029 19956053 5 951 2.0 1.0 1.5 2.0 979 chr3R 19955074 intron Hs6st - chr3R 19955564 intron Hs6st - chr3R 19956053 intron Hs6st - chr3R_5_19955001 chr3R_19955001 RAL-227 1139 chr3R 20008841 20008856 chr3R 20008922 20008937 4 81 2.5 5.0 3.8 0.8 96 chr3R 20008841 intergenic MED25 +,Hs6st - chr3R 20008889 intergenic MED25 +,Hs6st - chr3R 20008937 intergenic MED25 +,Hs6st - chr3R_4_20005001 chr3R_20005001 RAL-227 1140 chr3R 20060631 20060656 chr3R 20060714 20060739 7 83 3.0 2.5 2.8 1.8 108 chr3R 20060631 intergenic not near genes chr3R 20060685 intergenic not near genes chr3R 20060739 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-227 1141 chr3R 20109555 20109569 chr3R 20114761 20114775 copia 5 5206 1.0 1.5 1.2 2.3 5220 chr3R 20109555 intergenic not near genes chr3R 20112165 intergenic not near genes chr3R 20114775 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-227 1142 chr3R 20156696 20156718 chr3R 20165866 20165888 roo 5 9169 3.0 2.5 2.8 1.3 9192 chr3R 20156696 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165888 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-227 1143 chr3R 20205564 20205596 chr3R 20205686 20205718 5 122 0.0 1.5 0.8 2.8 154 chr3R 20205564 intron Nlg4 + chr3R 20205641 intron Nlg4 + chr3R 20205718 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-227 1144 chr3R 20245279 20245306 chr3R 20248887 20248915 F-element 4 3608 1.0 1.0 1.0 2.0 3636 chr3R 20245279 3` UTR Nlg4 + chr3R 20247097 intergenic not near genes chr3R 20248915 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-227 1145 chr3R 20266517 20266545 chr3R 20272987 20273016 Burdock 9 6471 1.5 4.0 2.8 2.4 6499 chr3R 20266517 intron cic + chr3R 20269766 intron cic + chr3R 20273016 intron cic + chr3R_9_20265001 chr3R_20265001 RAL-227 1146 chr3R 20331005 20331020 chr3R 20331491 20331506 roo 4 486 5.0 2.0 3.5 0.9 501 chr3R 20331005 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331506 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-227 1147 chr3R 20332136 20332164 chr3R 20332404 20332432 5 268 2.5 2.5 2.5 1.4 296 chr3R 20332136 intergenic not near genes chr3R 20332284 intergenic not near genes chr3R 20332432 intergenic not near genes chr3R_5_20330001 chr3R_20330001 RAL-227 1148 chr3R 20406489 20406519 chr3R 20406588 20406618 7 99 1.5 0.0 0.8 3.9 129 chr3R 20406489 intron Gfrl - chr3R 20406554 intron Gfrl - chr3R 20406618 intron,3` UTR Gfrl -,CG4335 - chr3R_7_20405001 chr3R_20405001 RAL-227 1149 chr3R 20506585 20506616 chr3R 20507388 20507419 BS 5 803 2.5 0.5 1.5 2.0 834 chr3R 20506585 intergenic Or92a + chr3R 20507002 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_5_20505001 chr3R_20505001 RAL-227 1150 chr3R 20513002 20513033 chr3R 20515705 20515736 opus 6 2703 2.5 1.0 1.8 2.1 2734 chr3R 20513002 intergenic not near genes chr3R 20514369 intergenic not near genes chr3R 20515736 intergenic not near genes chr3R_6_20510001 chr3R_20510001 RAL-227 1151 chr3R 20516551 20516565 chr3R 20516907 20516915 5 354 2.0 2.5 2.2 1.6 364 chr3R 20516551 intergenic not near genes chr3R 20516733 intergenic not near genes chr3R 20516915 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-227 1152 chr3R 20522102 20522138 chr3R 20522207 20522243 9 105 1.0 1.5 1.2 4.1 141 chr3R 20522102 intergenic not near genes chr3R 20522172 intergenic not near genes chr3R 20522243 intergenic not near genes chr3R_9_20520001 chr3R_20520001 RAL-227 1153 chr3R 20594483 20594511 chr3R 20594573 20594601 7 90 1.5 0.0 0.8 3.9 118 chr3R 20594483 intron bon + chr3R 20594542 intron bon + chr3R 20594601 intron bon + chr3R_7_20590001 chr3R_20590001 RAL-227 1154 chr3R 20686962 20686989 chr3R 20687397 20687424 8 432 2.0 2.0 2.0 2.7 462 chr3R 20686962 intergenic not near genes chr3R 20687193 intergenic not near genes chr3R 20687424 intergenic not near genes chr3R_8_20685001 chr3R_20685001 RAL-227 1155 chr3R 20725659 20725675 chr3R 20725951 20725967 7 292 2.0 1.0 1.5 2.8 308 chr3R 20725659 intergenic not near genes chr3R 20725813 intergenic not near genes chr3R 20725967 intergenic not near genes chr3R_7_20725001 chr3R_20725001 RAL-227 1156 chr3R 20771703 20771719 chr3R 20771784 20771800 4 81 0.0 3.0 1.5 1.6 97 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771800 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-227 1157 chr3R 20870251 20870281 chr3R 20870336 20870366 9 85 1.5 2.5 2.0 3.0 115 chr3R 20870251 intergenic not near genes chr3R 20870308 intergenic not near genes chr3R 20870366 intergenic not near genes chr3R_9_20870001 chr3R_20870001 RAL-227 1158 chr3R 21014026 21014043 chr3R 21014104 21014121 6 78 2.5 1.5 2.0 2.0 95 chr3R 21014026 3` UTR Calx + chr3R 21014074 3` UTR Calx + chr3R 21014121 3` UTR Calx + chr3R_6_21010001 chr3R_21010001 RAL-227 1159 chr3R 21020403 21020430 chr3R 21020479 21020506 5 76 0.5 1.5 1.0 2.5 103 chr3R 21020403 3` UTR Rlip + chr3R 21020454 3` UTR Rlip + chr3R 21020506 3` UTR Rlip + chr3R_5_21020001 chr3R_21020001 RAL-227 1160 chr3R 21108043 21108057 chr3R 21108304 21108318 5 261 2.0 1.5 1.8 1.8 275 chr3R 21108043 intergenic Sec15 -,rtet + chr3R 21108180 intergenic Sec15 -,rtet + chr3R 21108318 intergenic rtet +,Sec15 - chr3R_5_21105001 chr3R_21105001 RAL-227 1161 chr3R 21141676 21141701 chr3R 21150156 21150160 Tirant 6 8473 1.0 3.0 2.0 2.0 8484 chr3R 21141676 intron SNF4Agamma + chr3R 21145918 intron SNF4Agamma + chr3R 21150160 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-227 1162 chr3R 21163249 21163279 chr3R 21163327 21163357 6 77 2.5 0.0 1.2 2.7 108 chr3R 21163249 intron SNF4Agamma + chr3R 21163303 intron SNF4Agamma + chr3R 21163357 intron SNF4Agamma + chr3R_6_21160001 chr3R_21160001 RAL-227 1163 chr3R 21214747 21214766 chr3R 21214919 21214938 5 172 0.0 0.0 0.0 5.0 191 chr3R 21214747 intergenic CG5862 + chr3R 21214842 intergenic CG5862 + chr3R 21214938 intergenic CG5862 + chr3R_5_21210001 chr3R_21210001 RAL-227 1164 chr3R 21240460 21240479 chr3R 21240541 21240571 7 90 1.5 2.5 2.0 2.3 111 chr3R 21240460 intergenic not near genes chr3R 21240516 intergenic not near genes chr3R 21240571 intergenic not near genes chr3R_7_21240001 chr3R_21240001 RAL-227 1165 chr3R 21295321 21295345 chr3R 21295418 21295441 6 97 1.0 1.5 1.2 2.7 120 chr3R 21295321 intergenic not near genes chr3R 21295381 intergenic not near genes chr3R 21295441 intergenic not near genes chr3R_6_21295001 chr3R_21295001 RAL-227 1166 chr3R 21385701 21385960 chr3R 21385782 21386036 6 77 0.0 0.0 0.0 6.0 335 chr3R 21385701 intergenic not near genes chr3R 21385868 intergenic not near genes chr3R 21386036 intergenic not near genes chr3R_6_21385001 chr3R_21385001 RAL-227 1167 chr3R 21494680 21494715 chr3R 21494760 21494795 10 80 1.5 0.0 0.8 5.6 115 chr3R 21494680 intergenic not near genes chr3R 21494738 intergenic not near genes chr3R 21494795 intergenic not near genes chr3R_10_21490001 chr3R_21490001 RAL-227 1168 chr3R 21734865 21734888 chr3R 21734941 21734947 7 73 3.0 0.5 1.8 2.5 82 chr3R 21734865 intergenic not near genes chr3R 21734906 intergenic not near genes chr3R 21734947 intergenic not near genes chr3R_7_21730001 chr3R_21730001 RAL-227 1169 chr3R 21761128 21761140 chr3R 21768517 21768532 mdg1 4 7391 5.5 2.5 4.0 0.8 7404 chr3R 21761128 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768532 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-227 1170 chr3R 21784863 21784880 chr3R 21784961 21784978 9 96 3.5 0.0 1.8 3.2 115 chr3R 21784863 3` UTR,3` UTR CASK -,CRG - chr3R 21784920 3` UTR,3` UTR CASK -,CRG - chr3R 21784978 3` UTR,3` UTR CASK -,CRG - chr3R_9_21780001 chr3R_21780001 RAL-227 1171 chr3R 21850783 21850812 chr3R 21850922 21850951 6 138 9.0 8.0 8.5 0.6 168 chr3R 21850783 3` UTR glec - chr3R 21850867 3` UTR glec - chr3R 21850951 3` UTR glec - chr3R_6_21850001 chr3R_21850001 RAL-227 1172 chr3R 21907534 21907534 chr3R 28831798 28831802 12 6924267 16.0 14.5 15.2 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_12_25365001 chr3R_25365001 RAL-227 1173 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 12.0 13.0 12.5 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-227 1174 chr3R 17122371 17122372 chr3R 21907535 21907535 4 4785164 10.5 13.0 11.8 0.3 4785164 chr3R 17122371 intron cher - chr3R 19514953 intron Dys + chr3R 21907535 intergenic CG6678 + chr3R_4_19510001 chr3R_19510001 RAL-227 1175 chr3R 17389054 17389054 chr3R 21907535 21907535 5 4518481 3.0 13.0 8.0 0.6 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-227 1176 chr3R 21907535 21907535 chr3R 28831801 28831802 29 6924266 15.5 15.0 15.2 1.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-227 1177 chr3R 21907536 21907536 chr3R 28831801 28831802 30 6924266 15.5 15.0 15.2 1.9 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-227 1178 chr3R 21993851 21993882 chr3R 21993987 21994018 9 135 3.0 2.0 2.5 2.6 167 chr3R 21993851 intron Eip93F + chr3R 21993934 intron Eip93F + chr3R 21994018 intron Eip93F + chr3R_9_21990001 chr3R_21990001 RAL-227 1179 chr3R 22428576 22428603 chr3R 22428652 22428679 6 76 3.0 1.5 2.2 1.9 103 chr3R 22428576 intron CG13847 - chr3R 22428628 intron CG13847 - chr3R 22428679 intron CG13847 - chr3R_6_22425001 chr3R_22425001 RAL-227 1180 chr3R 22450541 22450573 chr3R 22453181 22453213 NOF 8 2640 1.0 4.5 2.8 2.1 2672 chr3R 22450541 intron CG34376 + chr3R 22451877 intron CG34376 + chr3R 22453213 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-227 1181 chr3R 22468984 22469014 chr3R 22469163 22469193 10 176 2.5 0.5 1.5 4.0 209 chr3R 22468984 intergenic Nrx-1 + chr3R 22469088 intergenic Nrx-1 + chr3R 22469193 intergenic Nrx-1 + chr3R_10_22465001 chr3R_22465001 RAL-227 1182 chr3R 22538441 22538465 chr3R 22538526 22538550 6 85 3.0 2.5 2.8 1.6 109 chr3R 22538441 intron CG5326 - chr3R 22538496 intron CG5326 - chr3R 22538550 intron CG5326 - chr3R_6_22535001 chr3R_22535001 RAL-227 1183 chr3R 22591669 22591699 chr3R 22591749 22591779 6 80 1.0 3.0 2.0 2.0 110 chr3R 22591669 intron Efa6 + chr3R 22591724 intron Efa6 + chr3R 22591779 intron Efa6 + chr3R_6_22590001 chr3R_22590001 RAL-227 1184 chr3R 22613433 22613454 chr3R 22613566 22613587 8 133 0.0 2.5 1.2 3.6 154 chr3R 22613433 exon CG31156 - chr3R 22613510 5` UTR CG31156 - chr3R 22613587 5` UTR CG31156 - chr3R_8_22610001 chr3R_22610001 RAL-227 1185 chr3R 22769089 22769125 chr3R 22769166 22769202 13 76 3.5 1.5 2.5 3.7 113 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769202 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_13_22765001 chr3R_22765001 RAL-227 1186 chr3R 22840813 22840849 chr3R 22841275 22841310 12 460 3.0 3.0 3.0 3.0 497 chr3R 22840813 intergenic not near genes chr3R 22841062 intergenic not near genes chr3R 22841310 intergenic not near genes chr3R_12_22840001 chr3R_22840001 RAL-227 1187 chr3R 22867437 22867461 chr3R 22867568 22867585 5 129 2.0 3.0 2.5 1.4 148 chr3R 22867437 intergenic not near genes chr3R 22867511 intergenic not near genes chr3R 22867585 intergenic not near genes chr3R_5_22865001 chr3R_22865001 RAL-227 1188 chr3R 22881204 22881220 chr3R 22884910 22884925 Doc 5 3706 1.0 0.5 0.8 2.8 3721 chr3R 22881204 intergenic not near genes chr3R 22883064 intergenic not near genes chr3R 22884925 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-227 1189 chr3R 22889015 22889043 chr3R 22889092 22889120 5 75 3.5 1.0 2.2 1.6 105 chr3R 22889015 intergenic not near genes chr3R 22889068 intergenic not near genes chr3R 22889120 intergenic not near genes chr3R_5_22885001 chr3R_22885001 RAL-227 1190 chr3R 22913926 22913948 chr3R 22914000 22914026 5 78 0.5 0.0 0.2 4.2 100 chr3R 22913926 intron klg + chr3R 22913976 intron klg + chr3R 22914026 intron klg + chr3R_5_22910001 chr3R_22910001 RAL-227 1191 chr3R 22971243 22971266 chr3R 22971337 22971360 7 94 5.5 3.0 4.2 1.3 117 chr3R 22971243 intergenic not near genes chr3R 22971302 intergenic not near genes chr3R 22971360 intergenic not near genes chr3R_7_22970001 chr3R_22970001 RAL-227 1192 chr3R 22974291 22974307 chr3R 22974375 22974390 4 83 0.5 2.0 1.2 1.8 99 chr3R 22974291 intergenic not near genes chr3R 22974340 intergenic not near genes chr3R 22974390 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-227 1193 chr3R 23064177 23064202 chr3R 23064286 23064311 9 108 1.0 2.5 1.8 3.2 134 chr3R 23064177 exon CG17111 - chr3R 23064244 intron CG17111 - chr3R 23064311 exon CG17111 - chr3R_9_23060001 chr3R_23060001 RAL-227 1194 chr3R 23064880 23064900 chr3R 23064971 23064991 4 91 0.0 0.5 0.2 3.3 111 chr3R 23064880 intron CG17111 - chr3R 23064936 intron CG17111 - chr3R 23064991 intron CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-227 1195 chr3R 23079052 23079085 chr3R 23079172 23079205 8 118 1.0 1.0 1.0 4.0 153 chr3R 23079052 intron CG13830 - chr3R 23079128 intron CG13830 - chr3R 23079205 intron CG13830 - chr3R_8_23075001 chr3R_23075001 RAL-227 1196 chr3R 23100154 23100440 chr3R 23100241 23100521 17 84 4.0 0.0 2.0 5.7 367 chr3R 23100154 intron,exon CG13830 -,CG6738 + chr3R 23100338 intron,exon CG13830 -,CG6738 + chr3R 23100521 intron,exon CG13830 -,CG6738 + chr3R_17_23100001 chr3R_23100001 RAL-227 1197 chr3R 23291247 23291282 chr3R 23291333 23291368 12 85 4.0 1.5 2.8 3.2 121 chr3R 23291247 3` UTR pnt - chr3R 23291308 3` UTR pnt - chr3R 23291368 exon pnt - chr3R_12_23290001 chr3R_23290001 RAL-227 1198 chr3R 23363672 23363704 chr3R 23363758 23363788 9 86 2.0 2.0 2.0 3.0 116 chr3R 23363672 intergenic CG4408 - chr3R 23363730 intergenic CG4408 - chr3R 23363788 intergenic CG4408 - chr3R_9_23360001 chr3R_23360001 RAL-227 1199 chr3R 23453679 23453708 chr3R 23453758 23453787 9 79 1.0 1.0 1.0 4.5 108 chr3R 23453679 intron CG4374 - chr3R 23453733 intron CG4374 - chr3R 23453787 intron CG4374 - chr3R_9_23450001 chr3R_23450001 RAL-227 1200 chr3R 23486270 23486292 chr3R 23486423 23486445 11 151 3.0 5.0 4.0 2.2 175 chr3R 23486270 intergenic CR44324 + chr3R 23486358 intergenic CR44324 + chr3R 23486445 intergenic CR44324 + chr3R_11_23485001 chr3R_23485001 RAL-227 1201 chr3R 23558402 23558427 chr3R 23560183 23560208 Bari1 4 1781 0.5 0.0 0.2 3.3 1806 chr3R 23558402 intron beat-IV + chr3R 23559305 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-227 1202 chr3R 23617928 23617953 chr3R 23618065 23618090 5 137 0.0 1.0 0.5 3.3 162 chr3R 23617928 intron CG31145 - chr3R 23618009 intron CG31145 - chr3R 23618090 intron CG31145 - chr3R_5_23615001 chr3R_23615001 RAL-227 1203 chr3R 23626337 23626354 chr3R 23626436 23626453 5 99 1.5 5.0 3.2 1.2 116 chr3R 23626337 intron CG31145 - chr3R 23626395 intron CG31145 - chr3R 23626453 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-227 1204 chr3R 23745220 23745247 chr3R 23745314 23745341 4 94 1.5 1.5 1.5 1.6 121 chr3R 23745220 intron Hmgcr + chr3R 23745280 intron Hmgcr + chr3R 23745341 intron Hmgcr + chr3R_4_23745001 chr3R_23745001 RAL-227 1205 chr3R 23835403 23835430 chr3R 23844553 23844580 roo 6 9150 2.5 1.0 1.8 2.1 9177 chr3R 23835403 intron CG34355 + chr3R 23839992 intron CG34355 + chr3R 23844580 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-227 1206 chr3R 23888095 23888115 chr3R 23888181 23888201 4 86 2.0 4.0 3.0 1.0 106 chr3R 23888095 intron Pli - chr3R 23888148 intron Pli - chr3R 23888201 intron Pli - chr3R_4_23885001 chr3R_23885001 RAL-227 1207 chr3R 23949041 23949074 chr3R 23949118 23949151 13 77 3.0 1.5 2.2 4.1 110 chr3R 23949041 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949151 intergenic not near genes chr3R_13_23945001 chr3R_23945001 RAL-227 1208 chr3R 24015070 24015087 chr3R 24015146 24015159 4 75 2.0 0.0 1.0 2.0 89 chr3R 24015070 intron KrT95D - chr3R 24015114 intron KrT95D - chr3R 24015159 intron KrT95D - chr3R_4_24015001 chr3R_24015001 RAL-227 1209 chr3R 24021640 24021658 chr3R 24021730 24021748 4 90 0.5 1.5 1.0 2.0 108 chr3R 24021640 intron KrT95D - chr3R 24021694 intron KrT95D - chr3R 24021748 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-227 1210 chr3R 24072088 24072105 chr3R 24072526 24072539 jockey 6 437 2.5 0.0 1.2 2.7 451 chr3R 24072088 intron 4EHP - chr3R 24072314 intron 4EHP - chr3R 24072539 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-227 1211 chr3R 24085799 24085816 chr3R 24085877 24085896 4 80 2.0 1.5 1.8 1.4 97 chr3R 24085799 intron 4EHP - chr3R 24085848 intron 4EHP - chr3R 24085896 intron 4EHP - chr3R_4_24085001 chr3R_24085001 RAL-227 1212 chr3R 24199748 24199772 chr3R 24199828 24199852 6 80 2.0 2.5 2.2 1.9 104 chr3R 24199748 intron twin - chr3R 24199800 intron twin - chr3R 24199852 intron twin - chr3R_6_24195001 chr3R_24195001 RAL-227 1213 chr3R 24207214 24207242 chr3R 24212290 24212309 flea 7 5074 6.5 3.0 4.8 1.2 5095 chr3R 24207214 intron twin - chr3R 24209762 intron twin - chr3R 24212309 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-227 1214 chr3R 21907535 21907535 chr3R 24389465 24389465 4 2481930 15.5 3.5 9.5 0.4 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-227 1215 chr3R 24426290 24426310 chr3R 24426545 24426567 7 256 1.0 4.0 2.5 2.0 277 chr3R 24426290 intron nAChRalpha1 - chr3R 24426428 intron nAChRalpha1 - chr3R 24426567 intron nAChRalpha1 - chr3R_7_24425001 chr3R_24425001 RAL-227 1216 chr3R 24433345 24433374 chr3R 24433490 24433519 11 145 1.0 4.0 2.5 3.1 174 chr3R 24433345 intron nAChRalpha1 - chr3R 24433432 intron nAChRalpha1 - chr3R 24433519 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-227 1217 chr3R 24434241 24434272 chr3R 24434318 24434350 4 77 0.5 1.0 0.8 2.2 109 chr3R 24434241 intron nAChRalpha1 - chr3R 24434296 intron nAChRalpha1 - chr3R 24434350 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-227 1218 chr3R 24493062 24493071 chr3R 24493148 24493157 4 86 1.0 1.0 1.0 2.0 95 chr3R 24493062 intergenic not near genes chr3R 24493110 intergenic not near genes chr3R 24493157 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-227 1219 chr3R 24493275 24493309 chr3R 24493504 24493537 BS 5 228 0.5 3.0 1.8 1.8 262 chr3R 24493275 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493537 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-227 1220 chr3R 24527805 24527834 chr3R 24527895 24527925 6 91 0.5 0.5 0.5 4.0 120 chr3R 24527805 intergenic CG6607 +,CG13618 + chr3R 24527865 intergenic CG6607 +,CG13618 + chr3R 24527925 intergenic CG6607 +,CG13618 + chr3R_6_24525001 chr3R_24525001 RAL-227 1221 chr3R 24743055 24743059 chr3R 24743140 24743144 4 85 0.5 3.0 1.8 1.4 89 chr3R 24743055 intron tok + chr3R 24743100 intron tok + chr3R 24743144 intron tok + chr3R_4_24740001 chr3R_24740001 RAL-227 1222 chr3R 24789983 24790012 chr3R 24790127 24790156 7 145 2.0 0.5 1.2 3.2 173 chr3R 24789983 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790156 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-227 1223 chr3R 24842106 24842136 chr3R 24842191 24842219 4 85 1.0 3.0 2.0 1.3 113 chr3R 24842106 5` UTR Esp + chr3R 24842162 5` UTR Esp + chr3R 24842219 5` UTR Esp + chr3R_4_24840001 chr3R_24840001 RAL-227 1224 chr3R 24927144 24927158 chr3R 24931935 24931949 Doc 4 4791 0.0 1.5 0.8 2.2 4805 chr3R 24927144 intergenic Trf4-2 + chr3R 24929546 intergenic not near genes chr3R 24931949 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-227 1225 chr3R 25004900 25004907 chr3R 25004983 25004990 4 83 0.0 1.0 0.5 2.7 90 chr3R 25004900 intron tnc + chr3R 25004945 intron tnc + chr3R 25004990 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-227 1226 chr3R 25053149 25053164 chr3R 25053234 25053249 4 85 0.0 7.0 3.5 0.9 100 chr3R 25053149 intergenic CG11791 +,CG31109 - chr3R 25053199 intergenic CG11791 +,CG31109 - chr3R 25053249 intergenic CG31109 -,CG11791 + chr3R_4_25050001 chr3R_25050001 RAL-227 1227 chr3R 25159507 25159521 chr3R 25159595 25159608 6 87 4.0 0.5 2.2 1.9 101 chr3R 25159507 intergenic not near genes chr3R 25159558 intergenic not near genes chr3R 25159608 intergenic not near genes chr3R_6_25155001 chr3R_25155001 RAL-227 1228 chr3R 25302134 25302162 chr3R 25302350 25302379 6 216 11.0 8.5 9.8 0.6 245 chr3R 25302134 exon CG13659 + chr3R 25302256 exon CG13659 + chr3R 25302379 intergenic CG13659 +,CG31370 + chr3R_6_25300001 chr3R_25300001 RAL-227 1229 chr3R 25422062 25422095 chr3R 25422143 25422176 9 81 0.5 0.0 0.2 7.5 114 chr3R 25422062 intron Fur1 - chr3R 25422119 intron Fur1 - chr3R 25422176 intron Fur1 - chr3R_9_25420001 chr3R_25420001 RAL-227 1230 chr3R 25464499 25464524 chr3R 25464815 25464840 8 316 2.5 0.5 1.5 3.2 341 chr3R 25464499 intron Fur1 - chr3R 25464670 intron Fur1 - chr3R 25464840 intron Fur1 - chr3R_8_25460001 chr3R_25460001 RAL-227 1231 chr3R 25612852 25612864 chr3R 25612951 25612968 8 103 0.0 7.5 3.8 1.7 116 chr3R 25612852 intron Npl4 - chr3R 25612910 intron Npl4 - chr3R 25612968 intron Npl4 - chr3R_8_25610001 chr3R_25610001 RAL-227 1232 chr3R 25832697 25832718 chr3R 25841879 25841896 roo 4 9181 2.0 1.0 1.5 1.6 9199 chr3R 25832697 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841896 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-227 1233 chr3R 25843641 25843668 chr3R 25843771 25843797 5 130 2.5 0.5 1.5 2.0 156 chr3R 25843641 intergenic CR45653 + chr3R 25843719 intergenic CR45653 + chr3R 25843797 intergenic CR45653 + chr3R_5_25840001 chr3R_25840001 RAL-227 1234 chr3R 25861829 25861842 chr3R 25861906 25861919 6 76 2.5 2.0 2.2 1.9 90 chr3R 25861829 intron CG5890 + chr3R 25861874 intron CG5890 + chr3R 25861919 intron CG5890 + chr3R_6_25860001 chr3R_25860001 RAL-227 1235 chr3R 25869212 25869240 chr3R 25869406 25869422 5 192 4.5 1.5 3.0 1.2 210 chr3R 25869212 intron CG5890 + chr3R 25869317 intron CG5890 + chr3R 25869422 intron CG5890 + chr3R_5_25865001 chr3R_25865001 RAL-227 1236 chr3R 25900881 25900913 chr3R 25903599 25903630 12 2718 25.5 21.0 23.2 0.5 2749 chr3R 25900881 exon CG31091 + chr3R 25902256 intergenic CG31091 +,CG31089 + chr3R 25903630 exon,intron CG31089 +,CR43259 - chr3R_12_25900001 chr3R_25900001 RAL-227 1237 chr3R 26060407 26060433 chr3R 26060493 26060519 5 85 2.5 2.0 2.2 1.6 112 chr3R 26060407 intron CG14544 + chr3R 26060463 intron CG14544 + chr3R 26060519 intron CG14544 + chr3R_5_26060001 chr3R_26060001 RAL-227 1238 chr3R 26066360 26066385 chr3R 26066444 26066470 6 82 2.0 5.5 3.8 1.2 110 chr3R 26066360 intergenic not near genes chr3R 26066415 intergenic not near genes chr3R 26066470 intergenic not near genes chr3R_6_26065001 chr3R_26065001 RAL-227 1239 chr3R 26126550 26126570 chr3R 26126636 26126656 4 86 1.5 2.5 2.0 1.3 106 chr3R 26126550 intron CG31324 + chr3R 26126603 intron CG31324 + chr3R 26126656 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-227 1240 chr3R 26138387 26138423 chr3R 26138479 26138486 4 84 1.5 1.0 1.2 1.8 99 chr3R 26138387 intergenic not near genes chr3R 26138436 intergenic not near genes chr3R 26138486 intergenic not near genes chr3R_4_26135001 chr3R_26135001 RAL-227 1241 chr3R 26235490 26235504 chr3R 26235572 26235586 7 82 1.5 2.5 2.0 2.3 96 chr3R 26235490 5` UTR CR42745 + chr3R 26235538 5` UTR CR42745 + chr3R 26235586 5` UTR CR42745 + chr3R_7_26235001 chr3R_26235001 RAL-227 1242 chr3R 26292105 26292140 chr3R 26292185 26292219 10 80 2.0 1.0 1.5 4.0 114 chr3R 26292105 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292219 intergenic not near genes chr3R_10_26290001 chr3R_26290001 RAL-227 1243 chr3R 26365111 26365143 chr3R 26365196 26365227 7 85 0.0 2.5 1.2 3.2 116 chr3R 26365111 intergenic not near genes chr3R 26365169 intergenic not near genes chr3R 26365227 intergenic not near genes chr3R_7_26365001 chr3R_26365001 RAL-227 1244 chr3R 26370335 26370362 chr3R 26370419 26370446 5 84 0.0 0.5 0.2 4.2 111 chr3R 26370335 intergenic not near genes chr3R 26370390 intergenic not near genes chr3R 26370446 intergenic not near genes chr3R_5_26370001 chr3R_26370001 RAL-227 1245 chr3R 26376326 26376353 chr3R 26385482 26385512 roo 7 9158 1.0 0.0 0.5 4.7 9186 chr3R 26376326 intergenic not near genes chr3R 26380919 intergenic not near genes chr3R 26385512 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-227 1246 chr3R 26482357 26482383 chr3R 26482434 26482461 9 76 3.0 1.5 2.2 2.8 104 chr3R 26482357 intron plum - chr3R 26482409 intron plum - chr3R 26482461 intron plum - chr3R_9_26480001 chr3R_26480001 RAL-227 1247 chr3R 26510516 26510532 chr3R 26519577 26519591 roo 4 9060 4.0 3.5 3.8 0.8 9075 chr3R 26510516 intron plum - chr3R 26515054 intron plum - chr3R 26519591 intron,5` UTR plum -,CR45226 + chr3R_4_26515001 chr3R_26515001 RAL-227 1248 chr3R 26541015 26541029 chr3R 26541094 26541106 7 77 0.0 3.0 1.5 2.8 91 chr3R 26541015 intron scrib + chr3R 26541060 intron scrib + chr3R 26541106 intron scrib + chr3R_7_26540001 chr3R_26540001 RAL-227 1249 chr3R 26542049 26542079 chr3R 26542140 26542169 6 90 2.5 2.0 2.2 1.9 120 chr3R 26542049 intron scrib + chr3R 26542109 intron scrib + chr3R 26542169 intron scrib + chr3R_6_26540001 chr3R_26540001 RAL-227 1250 chr3R 26642731 26642754 chr3R 26643124 26643147 jockey 9 393 2.0 4.0 3.0 2.2 416 chr3R 26642731 intergenic not near genes chr3R 26642939 intergenic not near genes chr3R 26643147 intergenic not near genes chr3R_9_26640001 chr3R_26640001 RAL-227 1251 chr3R 26710831 26710856 chr3R 26710915 26710940 8 84 2.0 1.5 1.8 2.9 109 chr3R 26710831 intron amon - chr3R 26710886 intron amon - chr3R 26710940 intron amon - chr3R_8_26710001 chr3R_26710001 RAL-227 1252 chr3R 26770241 26770274 chr3R 26770318 26770351 9 77 3.0 1.0 2.0 3.0 110 chr3R 26770241 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_9_26770001 chr3R_26770001 RAL-227 1253 chr3R 26810551 26810586 chr3R 26811036 26811071 roo 6 485 1.0 3.5 2.2 1.9 520 chr3R 26810551 intron Tl + chr3R 26810811 intron Tl + chr3R 26811071 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-227 1254 chr3R 26825063 26825068 chr3R 26825139 26825144 4 76 4.5 0.0 2.2 1.2 81 chr3R 26825063 intron Tl + chr3R 26825104 intron Tl + chr3R 26825144 intron Tl + chr3R_4_26825001 chr3R_26825001 RAL-227 1255 chr3R 27007411 27007431 chr3R 27016546 27016566 roo 6 9134 1.5 4.5 3.0 1.5 9155 chr3R 27007411 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016566 intron RYa-R + chr3R_6_27010001 chr3R_27010001 RAL-227 1256 chr3R 27028737 27028753 chr3R 27028816 27028832 5 79 0.5 1.5 1.0 2.5 95 chr3R 27028737 intron RYa-R + chr3R 27028784 intron RYa-R + chr3R 27028832 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-227 1257 chr3R 27030316 27030336 chr3R 27030605 27030625 4 289 1.5 1.0 1.2 1.8 309 chr3R 27030316 intron RYa-R + chr3R 27030470 intron RYa-R + chr3R 27030625 intron RYa-R + chr3R_4_27030001 chr3R_27030001 RAL-227 1258 chr3R 27140513 27140542 chr3R 27148123 27148152 412 11 7610 4.0 1.0 2.5 3.1 7639 chr3R 27140513 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148152 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-227 1259 chr3R 27300863 27300876 chr3R 27300955 27300968 4 92 2.0 1.0 1.5 1.6 105 chr3R 27300863 intron CG3339 - chr3R 27300916 intron CG3339 - chr3R 27300968 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-227 1260 chr3R 27329482 27329491 chr3R 27329559 27329567 4 76 3.5 2.5 3.0 1.0 85 chr3R 27329482 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329567 intergenic CG3330 - chr3R_4_27325001 chr3R_27325001 RAL-227 1261 chr3R 27342200 27342229 chr3R 27342321 27342351 6 121 1.5 4.0 2.8 1.6 151 chr3R 27342200 intron CG42534 + chr3R 27342276 intron CG42534 + chr3R 27342351 intron CG42534 + chr3R_6_27340001 chr3R_27340001 RAL-227 1262 chr3R 27342791 27342826 chr3R 27351372 27351406 Tirant 9 8580 1.0 2.5 1.8 3.2 8615 chr3R 27342791 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351406 intron CG42534 + chr3R_9_27345001 chr3R_27345001 RAL-227 1263 chr3R 27492379 27492395 chr3R 27492466 27492482 6 87 3.5 0.0 1.8 2.1 103 chr3R 27492379 intergenic not near genes chr3R 27492430 intergenic not near genes chr3R 27492482 intergenic not near genes chr3R_6_27490001 chr3R_27490001 RAL-227 1264 chr3R 27521159 27521177 chr3R 27530367 27530385 roo 5 9209 3.5 2.0 2.8 1.3 9226 chr3R 27521159 intron CG12885 + chr3R 27525772 intron CG12885 + chr3R 27530385 intron CG12885 + chr3R_5_27525001 chr3R_27525001 RAL-227 1265 chr3R 27721490 27721509 chr3R 27721568 27721587 8 77 3.5 3.5 3.5 1.8 97 chr3R 27721490 intergenic not near genes chr3R 27721538 intergenic not near genes chr3R 27721587 intergenic not near genes chr3R_8_27720001 chr3R_27720001 RAL-227 1266 chr3R 27725562 27725594 chr3R 27731004 27731035 I-element 9 5442 2.0 1.5 1.8 3.2 5473 chr3R 27725562 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731035 intergenic not near genes chr3R_9_27725001 chr3R_27725001 RAL-227 1267 chr3R 27812451 27812461 chr3R 27812505 27812538 4 71 1.0 4.0 2.5 1.1 87 chr3R 27812451 intron CG34353 - chr3R 27812494 intron CG34353 - chr3R 27812538 intron CG34353 - chr3R_4_27810001 chr3R_27810001 RAL-227 1268 chr3R 27856763 27856781 chr3R 27858241 27858264 hopper2 10 1482 4.5 1.0 2.8 2.6 1501 chr3R 27856763 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858264 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-227 1269 chr3R 27871063 27871083 chr3R 27871164 27871184 7 101 1.0 1.5 1.2 3.2 121 chr3R 27871063 intron CG34353 - chr3R 27871124 intron CG34353 - chr3R 27871184 intron CG34353 - chr3R_7_27870001 chr3R_27870001 RAL-227 1270 chr3R 27875701 27875726 chr3R 27882756 27882781 297 4 7055 3.5 2.0 2.8 1.1 7080 chr3R 27875701 intron CG34353 - chr3R 27879241 intron CG34353 - chr3R 27882781 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-227 1271 chr3R 28068491 28068521 chr3R 28073933 28073963 I-element 7 5442 2.0 0.5 1.2 3.2 5472 chr3R 28068491 intron CG34362 + chr3R 28071227 intron CG34362 + chr3R 28073963 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-227 1272 chr3R 28172962 28172980 chr3R 28173119 28173137 5 157 0.5 0.5 0.5 3.3 175 chr3R 28172962 intron CG34354 + chr3R 28173050 intron CG34354 + chr3R 28173137 intron CG34354 + chr3R_5_28170001 chr3R_28170001 RAL-227 1273 chr3R 28173678 28173701 chr3R 28181108 28181131 mdg1 4 7430 1.5 1.5 1.5 1.6 7453 chr3R 28173678 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181131 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-227 1274 chr3R 28253339 28253372 chr3R 28255849 28255858 jockey 14 2508 2.5 2.0 2.2 4.4 2519 chr3R 28253339 intergenic not near genes chr3R 28254598 intergenic not near genes chr3R 28255858 intergenic not near genes chr3R_14_28250001 chr3R_28250001 RAL-227 1275 chr3R 28282985 28283013 chr3R 28283614 28283642 4 629 1.0 2.0 1.5 1.6 657 chr3R 28282985 exon CG34436 + chr3R 28283314 exon CG34436 + chr3R 28283642 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-227 1276 chr3R 28308074 28308080 chr3R 28308150 28308156 4 75 1.0 5.5 3.2 1.0 82 chr3R 28308074 intergenic not near genes chr3R 28308115 intergenic not near genes chr3R 28308156 intergenic not near genes chr3R_4_28305001 chr3R_28305001 RAL-227 1277 chr3R 28352515 28352537 chr3R 28352852 28352875 9 339 2.0 2.0 2.0 3.0 360 chr3R 28352515 exon Or98b + chr3R 28352695 exon Or98b + chr3R 28352875 exon Or98b + chr3R_9_28350001 chr3R_28350001 RAL-227 1278 chr3R 28390113 28390138 chr3R 28390189 28390215 7 75 2.5 1.5 2.0 2.3 102 chr3R 28390113 intergenic not near genes chr3R 28390164 intergenic not near genes chr3R 28390215 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-227 1279 chr3R 28393697 28393730 chr3R 28393797 28393830 11 99 3.0 1.5 2.2 3.4 133 chr3R 28393697 intergenic not near genes chr3R 28393764 intergenic not near genes chr3R 28393830 intergenic not near genes chr3R_11_28390001 chr3R_28390001 RAL-227 1280 chr3R 28546966 28546972 chr3R 28547068 28547078 5 104 3.5 2.0 2.8 1.3 112 chr3R 28546966 intergenic not near genes chr3R 28547022 intergenic not near genes chr3R 28547078 intergenic not near genes chr3R_5_28545001 chr3R_28545001 RAL-227 1281 chr3R 28637819 28637849 chr3R 28640294 28640326 9 2476 17.5 5.5 11.5 0.7 2507 chr3R 28637819 exon CG9988 + chr3R 28639072 intergenic CG9988 + chr3R 28640326 intergenic not near genes chr3R_9_28635001 chr3R_28635001 RAL-227 1282 chr3R 28687089 28687127 chr3R 28687168 28687187 13 77 3.5 2.0 2.8 3.4 98 chr3R 28687089 intron CG9990 + chr3R 28687138 intron CG9990 + chr3R 28687187 intron CG9990 + chr3R_13_28685001 chr3R_28685001 RAL-227 1283 chr3R 28758286 28758305 chr3R 28763902 28763922 roo 7 5617 3.0 0.0 1.5 2.8 5636 chr3R 28758286 intergenic aqrs - chr3R 28761104 intergenic not near genes chr3R 28763922 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-227 1284 chr3R 28792873 28792884 chr3R 28797968 28797979 jockey 4 5095 4.0 3.0 3.5 0.9 5106 chr3R 28792873 intergenic not near genes chr3R 28795426 intergenic not near genes chr3R 28797979 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-227 1285 chr3R 28811568 28811604 chr3R 28811714 28811750 6 146 2.0 0.5 1.2 2.7 182 chr3R 28811568 intergenic wdn - chr3R 28811659 intergenic wdn -,CG1646 + chr3R 28811750 intergenic CG1646 +,wdn - chr3R_6_28810001 chr3R_28810001 RAL-227 1286 chr3R 21907534 21907536 chr3R 28831801 28831802 56 6924266 15.5 15.0 15.2 3.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_56_25365001 chr3R_25365001 RAL-227 1287 chr3R 28853392 28853409 chr3R 28853468 28853485 6 74 2.0 1.0 1.5 2.4 93 chr3R 28853392 intron spg + chr3R 28853438 intron spg + chr3R 28853485 intron spg + chr3R_6_28850001 chr3R_28850001 RAL-227 1288 chr3R 28989010 28989018 chr3R 28989089 28989097 5 79 0.0 0.5 0.2 4.2 87 chr3R 28989010 intergenic not near genes chr3R 28989054 intergenic not near genes chr3R 28989097 intergenic not near genes chr3R_5_28985001 chr3R_28985001 RAL-227 1289 chr3R 28998309 28998339 chr3R 28998558 28998589 7 249 3.0 1.5 2.2 2.2 280 chr3R 28998309 intron wat - chr3R 28998449 intron wat - chr3R 28998589 intron wat - chr3R_7_28995001 chr3R_28995001 RAL-227 1290 chr3R 29009958 29009986 chr3R 29010064 29010092 8 106 0.0 2.5 1.2 3.6 134 chr3R 29009958 intron wat - chr3R 29010025 intron wat - chr3R 29010092 intron wat - chr3R_8_29010001 chr3R_29010001 RAL-227 1291 chr3R 29021447 29021473 chr3R 29021704 29021730 7 257 1.0 1.0 1.0 3.5 283 chr3R 29021447 3` UTR CR44264 - chr3R 29021588 3` UTR CR44264 - chr3R 29021730 3` UTR CR44264 - chr3R_7_29020001 chr3R_29020001 RAL-227 1292 chr3R 29032746 29032777 chr3R 29032823 29032839 5 70 2.5 2.5 2.5 1.4 93 chr3R 29032746 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032792 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032839 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-227 1293 chr3R 29054029 29054052 chr3R 29054104 29054128 7 76 1.0 4.5 2.8 1.8 99 chr3R 29054029 intergenic CG11842 +,CG11843 + chr3R 29054078 intergenic CG11842 +,CG11843 + chr3R 29054128 intergenic CG11842 +,CG11843 + chr3R_7_29050001 chr3R_29050001 RAL-227 1294 chr3R 29094036 29094054 chr3R 29094250 29094268 4 214 1.0 7.5 4.2 0.8 232 chr3R 29094036 intron CG11873 + chr3R 29094152 intron CG11873 + chr3R 29094268 intron CG11873 + chr3R_4_29090001 chr3R_29090001 RAL-227 1295 chr3R 29237251 29237285 chr3R 29239272 29239306 8 2021 11.0 5.5 8.2 0.9 2055 chr3R 29237251 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239306 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-227 1296 chr3R 29240325 29240343 chr3R 29240409 29240427 5 84 1.5 0.0 0.8 2.8 102 chr3R 29240325 5` UTR CG31427 - chr3R 29240376 intergenic CG31427 -,CG31445 - chr3R 29240427 intergenic CG31427 -,CG31445 - chr3R_5_29240001 chr3R_29240001 RAL-227 1297 chr3R 29249623 29249650 chr3R 29249710 29249737 8 87 0.5 3.0 1.8 2.9 114 chr3R 29249623 intron SP1029 - chr3R 29249680 intron SP1029 - chr3R 29249737 intron SP1029 - chr3R_8_29245001 chr3R_29245001 RAL-227 1298 chr3R 29256267 29256299 chr3R 29256344 29256378 4 79 1.0 1.5 1.2 1.8 111 chr3R 29256267 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256378 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-227 1299 chr3R 29319849 29319857 chr3R 29320168 29320176 jockey 4 318 1.5 2.5 2.0 1.3 327 chr3R 29319849 intergenic Cnx99A - chr3R 29320012 intergenic Cnx99A - chr3R 29320176 intergenic not near genes chr3R_4_29320001 chr3R_29320001 RAL-227 1300 chr3R 29351737 29351754 chr3R 29351820 29351839 5 83 3.0 4.5 3.8 1.0 102 chr3R 29351737 intergenic not near genes chr3R 29351788 intergenic not near genes chr3R 29351839 intergenic not near genes chr3R_5_29350001 chr3R_29350001 RAL-227 1301 chr3R 29356066 29356081 chr3R 29356147 29356162 4 81 1.5 5.0 3.2 1.0 96 chr3R 29356066 intergenic CR45547 - chr3R 29356114 intergenic CR45547 - chr3R 29356162 3` UTR CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-227 1302 chr3R 29402980 29403002 chr3R 29403075 29403097 4 95 2.0 0.5 1.2 1.8 117 chr3R 29402980 intron Ptp99A + chr3R 29403038 intron Ptp99A + chr3R 29403097 intron Ptp99A + chr3R_4_29400001 chr3R_29400001 RAL-227 1303 chr3R 29406618 29406649 chr3R 29407904 29407935 jockey 7 1285 0.0 3.5 1.8 2.5 1317 chr3R 29406618 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407935 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-227 1304 chr3R 29430374 29430404 chr3R 29430480 29430509 9 106 3.5 2.0 2.8 2.4 135 chr3R 29430374 intron Ptp99A + chr3R 29430442 intron Ptp99A + chr3R 29430509 intron Ptp99A + chr3R_9_29430001 chr3R_29430001 RAL-227 1305 chr3R 29472013 29472031 chr3R 29472106 29472124 7 92 1.5 2.5 2.0 2.3 111 chr3R 29472013 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472124 intron Ptp99A + chr3R_7_29470001 chr3R_29470001 RAL-227 1306 chr3R 29529155 29529172 chr3R 29529598 29529615 6 443 1.5 3.5 2.5 1.7 460 chr3R 29529155 intergenic not near genes chr3R 29529385 intergenic not near genes chr3R 29529615 intergenic not near genes chr3R_6_29525001 chr3R_29525001 RAL-227 1307 chr3R 29550256 29550270 chr3R 29550337 29550351 4 80 5.5 2.5 4.0 0.8 95 chr3R 29550256 intergenic not near genes chr3R 29550304 intergenic not near genes chr3R 29550351 intergenic not near genes chr3R_4_29550001 chr3R_29550001 RAL-227 1308 chr3R 29590377 29590396 chr3R 29590469 29590489 6 93 0.0 4.5 2.2 1.9 112 chr3R 29590377 intron CG31041 - chr3R 29590433 intron CG31041 - chr3R 29590489 intron CG31041 - chr3R_6_29590001 chr3R_29590001 RAL-227 1309 chr3R 29645831 29645855 chr3R 29645912 29645936 8 79 1.5 4.5 3.0 2.0 105 chr3R 29645831 intron Dop1R2 - chr3R 29645884 intron Dop1R2 - chr3R 29645936 intron Dop1R2 - chr3R_8_29645001 chr3R_29645001 RAL-227 1310 chr3R 29655650 29655680 chr3R 29655729 29655759 4 79 2.0 0.5 1.2 1.8 109 chr3R 29655650 intron Dop1R2 - chr3R 29655704 intron Dop1R2 - chr3R 29655759 intron Dop1R2 - chr3R_4_29655001 chr3R_29655001 RAL-227 1311 chr3R 29738264 29738301 chr3R 29739731 29739768 hobo 7 1466 2.5 1.0 1.8 2.5 1504 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739768 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-227 1312 chr3R 29882018 29882052 chr3R 29891175 29891209 roo 11 9157 0.0 2.0 1.0 5.5 9191 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_11_29885001 chr3R_29885001 RAL-227 1313 chr3R 29950575 29950596 chr3R 29950652 29950673 4 76 2.5 1.5 2.0 1.3 98 chr3R 29950575 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950673 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-227 1314 chr3R 29963485 29963503 chr3R 29963587 29963603 5 102 3.5 1.0 2.2 1.6 118 chr3R 29963485 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963603 intron TkR99D - chr3R_5_29960001 chr3R_29960001 RAL-227 1315 chr3R 15095973 15095978 chr3R 29976111 29976116 4 14880138 7.0 6.0 6.5 0.5 14880143 chr3R 15095973 3` UTR CG42788 - chr3R 22536044 intron CG5326 - chr3R 29976116 intergenic not near genes chr3R_4_22535001 chr3R_22535001 RAL-227 1316 chr3R 30084851 30084886 chr3R 30086318 30086329 hobo 12 1464 3.5 3.0 3.2 2.9 1478 chr3R 30084851 intron sima + chr3R 30085590 intron sima + chr3R 30086329 intron sima + chr3R_12_30085001 chr3R_30085001 RAL-227 1317 chr3R 30252190 30252335 chr3R 30252296 30252518 4 125 12.5 12.0 12.2 0.3 328 chr3R 30252190 exon CG9682 + chr3R 30252354 exon CG9682 + chr3R 30252518 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-227 1318 chr3R 30268245 30268447 chr3R 30268324 30268528 9 78 1.0 1.5 1.2 4.1 283 chr3R 30268245 intergenic not near genes chr3R 30268386 intergenic not near genes chr3R 30268528 intergenic not near genes chr3R_9_30265001 chr3R_30265001 RAL-227 1319 chr3R 30270112 30270142 chr3R 30270202 30270232 9 90 1.5 1.0 1.2 4.1 120 chr3R 30270112 intergenic not near genes chr3R 30270172 intergenic not near genes chr3R 30270232 intergenic not near genes chr3R_9_30270001 chr3R_30270001 RAL-227 1320 chr3R 30317334 30317356 chr3R 30324926 30324947 roo 5 7592 0.0 2.5 1.2 2.3 7613 chr3R 30317334 intron hdc + chr3R 30321140 intron hdc + chr3R 30324947 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-227 1321 chr3R 30375546 30375565 chr3R 30383171 30383190 412 4 7625 1.0 1.5 1.2 1.8 7644 chr3R 30375546 intergenic not near genes chr3R 30379368 intergenic not near genes chr3R 30383190 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-227 1322 chr3R 30387017 30387044 chr3R 30391310 30391337 6 4294 13.0 5.5 9.2 0.6 4320 chr3R 30387017 intron Fer1HCH - chr3R 30389177 intron Fer2LCH + chr3R 30391337 intergenic not near genes chr3R_6_30385001 chr3R_30385001 RAL-227 1323 chr3R 30461497 30461518 chr3R 30461613 30461629 7 116 2.0 1.5 1.8 2.5 132 chr3R 30461497 intron CDase + chr3R 30461563 intron CDase + chr3R 30461629 intron CDase + chr3R_7_30460001 chr3R_30460001 RAL-227 1324 chr3R 30480474 30480511 chr3R 30482942 30482978 jockey 6 2468 2.5 2.5 2.5 1.7 2504 chr3R 30480474 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-227 1325 chr3R 30549009 30549038 chr3R 30549101 30549130 5 92 2.0 1.0 1.5 2.0 121 chr3R 30549009 intron tmod + chr3R 30549070 intron tmod + chr3R 30549130 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-227 1326 chr3R 30568325 30568344 chr3R 30568434 30568453 6 109 3.5 2.0 2.8 1.6 128 chr3R 30568325 intron tmod + chr3R 30568389 intron tmod + chr3R 30568453 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-227 1327 chr3R 30627602 30627638 chr3R 30627682 30627718 12 77 0.5 2.5 1.5 4.8 116 chr3R 30627602 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-227 1328 chr3R 30679533 30679550 chr3R 30687002 30687017 blood 7 7469 0.5 5.5 3.0 1.8 7484 chr3R 30679533 intergenic not near genes chr3R 30683275 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-227 1329 chr3R 30818815 30818839 chr3R 30820380 30820404 1360 6 1565 3.0 1.5 2.2 1.9 1589 chr3R 30818815 intron cindr + chr3R 30819610 intron cindr + chr3R 30820404 intron cindr + chr3R_6_30815001 chr3R_30815001 RAL-227 1330 chr3R 30850241 30850260 chr3R 30850333 30850352 10 92 1.5 2.0 1.8 3.6 111 chr3R 30850241 intergenic not near genes chr3R 30850296 intergenic not near genes chr3R 30850352 intergenic not near genes chr3R_10_30850001 chr3R_30850001 RAL-227 1331 chr3R 30921158 30921175 chr3R 30921251 30921272 6 94 3.0 2.0 2.5 1.7 114 chr3R 30921158 intron Ptx1 + chr3R 30921215 intron Ptx1 + chr3R 30921272 intron Ptx1 + chr3R_6_30920001 chr3R_30920001 RAL-227 1332 chr3R 30982595 30982626 chr3R 30982686 30982718 6 91 1.5 2.0 1.8 2.1 123 chr3R 30982595 intron 5-HT7 - chr3R 30982656 intron 5-HT7 - chr3R 30982718 intron 5-HT7 - chr3R_6_30980001 chr3R_30980001 RAL-227 1333 chr3R 30996648 30996669 chr3R 30996872 30996893 4 224 1.0 5.0 3.0 1.0 245 chr3R 30996648 intron 5-HT7 - chr3R 30996770 intron 5-HT7 - chr3R 30996893 intron 5-HT7 - chr3R_4_30995001 chr3R_30995001 RAL-227 1334 chr3R 31074235 31074255 chr3R 31081833 31081852 springer 4 7598 2.5 3.5 3.0 1.0 7617 chr3R 31074235 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-227 1335 chr3R 31116678 31116704 chr3R 31116759 31116785 4 81 2.0 1.0 1.5 1.6 107 chr3R 31116678 intergenic not near genes chr3R 31116732 intergenic not near genes chr3R 31116785 intergenic not near genes chr3R_4_31115001 chr3R_31115001 RAL-227 1336 chr3R 31164549 31164582 chr3R 31164642 31164660 13 92 1.5 1.5 1.5 5.2 111 chr3R 31164549 intron,intron Gycbeta100B +,stops - chr3R 31164604 intron,intron Gycbeta100B +,stops - chr3R 31164660 intron,intron Gycbeta100B +,stops - chr3R_13_31160001 chr3R_31160001 RAL-227 1337 chr3R 31274365 31274395 chr3R 31274442 31274473 14 76 3.0 3.0 3.0 3.5 108 chr3R 31274365 intergenic not near genes chr3R 31274419 intergenic not near genes chr3R 31274473 intergenic not near genes chr3R_14_31270001 chr3R_31270001 RAL-227 1338 chr3R 31279371 31279406 chr3R 31285562 31285582 diver 6 6183 4.0 1.5 2.8 1.6 6211 chr3R 31279371 intergenic not near genes chr3R 31282476 intergenic not near genes chr3R 31285582 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-227 1339 chr3R 31407272 31407286 chr3R 31407358 31407371 4 86 2.5 2.5 2.5 1.1 99 chr3R 31407272 intron Gprk2 + chr3R 31407322 intron Gprk2 + chr3R 31407371 intron Gprk2 + chr3R_4_31405001 chr3R_31405001 RAL-227 1340 chr3R 31413088 31413123 chr3R 31418288 31418321 copia 4 5200 1.0 0.0 0.5 2.7 5233 chr3R 31413088 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-227 1341 chr3R 31426887 31426914 chr3R 31426979 31427006 7 92 2.0 2.5 2.2 2.2 119 chr3R 31426887 intron Gprk2 + chr3R 31426946 intron Gprk2 + chr3R 31427006 intron Gprk2 + chr3R_7_31425001 chr3R_31425001 RAL-227 1342 chr3R 31435366 31435390 chr3R 31435518 31435542 9 151 2.0 1.5 1.8 3.2 176 chr3R 31435366 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435542 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-227 1343 chr3R 31691543 31691559 chr3R 31696302 31696311 Doc 6 4758 2.5 4.5 3.5 1.3 4768 chr3R 31691543 intergenic not near genes chr3R 31693927 intergenic not near genes chr3R 31696311 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-227 1344 chr3R 31808613 31808637 chr3R 31808689 31808713 8 76 3.0 0.5 1.8 2.9 100 chr3R 31808613 intron CG11576 - chr3R 31808663 intron CG11576 - chr3R 31808713 intron CG11576 - chr3R_8_31805001 chr3R_31805001 RAL-227 1345 chr3R 31879922 31879958 chr3R 31880010 31880043 12 87 2.0 1.5 1.8 4.3 121 chr3R 31879922 intron heph - chr3R 31879982 intron heph - chr3R 31880043 intron heph - chr3R_12_31875001 chr3R_31875001 RAL-227 1346 chr3R 31961340 31961365 chr3R 31961420 31961423 5 76 1.0 3.5 2.2 1.6 83 chr3R 31961340 intron heph - chr3R 31961382 intron heph - chr3R 31961423 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-227 1347 chr3R 31962077 31962096 chr3R 31962383 31962402 7 305 2.0 1.0 1.5 2.8 325 chr3R 31962077 intron heph - chr3R 31962240 intron heph - chr3R 31962402 intron heph - chr3R_7_31960001 chr3R_31960001 RAL-227 1348 chr3R 31991117 31991129 chr3R 31991196 31991208 4 79 1.0 1.0 1.0 2.0 91 chr3R 31991117 intron heph - chr3R 31991162 intron heph - chr3R 31991208 intron heph - chr3R_4_31990001 chr3R_31990001 RAL-227 1349 chr3R 31998000 31998023 chr3R 32005469 32005493 blood 6 7470 2.5 4.0 3.2 1.4 7493 chr3R 31998000 intron heph - chr3R 32001746 intron heph - chr3R 32005493 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-227 1350 chr3R 32022326 32022356 chr3R 32022428 32022443 10 100 2.0 4.5 3.2 2.4 117 chr3R 32022326 5` UTR CR45557 + chr3R 32022384 5` UTR CR45557 + chr3R 32022443 5` UTR CR45557 + chr3R_10_32020001 chr3R_32020001 RAL-227 1351 chr3R 32034154 32034174 chr3R 32034225 32034242 8 73 3.5 1.0 2.2 2.5 88 chr3R 32034154 intergenic not near genes chr3R 32034198 intergenic not near genes chr3R 32034242 intergenic not near genes chr3R_8_32030001 chr3R_32030001 RAL-227 1352 chr3R 32045334 32045357 chr3R 32045409 32045433 4 76 1.0 1.5 1.2 1.8 99 chr3R 32045334 3` UTR krz - chr3R 32045384 3` UTR krz - chr3R 32045433 3` UTR krz - chr3R_4_32045001 chr3R_32045001 RAL-227 1353 chr4 69779 69803 chr4 69866 69890 5 87 2.0 1.0 1.5 2.0 111 chr4 69779 5` UTR pan + chr4 69834 5` UTR pan + chr4 69890 5` UTR pan + chr4_5_65001 chr4_65001 RAL-227 1354 chr4 319997 320020 chr4 328173 328196 Stalker2 4 8176 2.5 3.5 3.0 1.0 8199 chr4 319997 3` UTR CG32850 + chr4 324096 intron CG32850 + chr4 328196 3` UTR,3` UTR CG32850 +,PMCA - chr4_4_320001 chr4_320001 RAL-227 1355 chr4 671605 671636 chr4 680188 680219 Tirant 10 8583 2.5 1.5 2.0 3.3 8614 chr4 671605 intron CG11360 + chr4 675912 intron CG11360 + chr4 680219 intron CG11360 + chr4_10_675001 chr4_675001 RAL-227 1356 chr4 852900 852917 chr4 853264 853281 7 364 1.0 2.0 1.5 2.8 381 chr4 852900 intergenic not near genes chr4 853090 intergenic not near genes chr4 853281 intergenic CG11148 - chr4_7_850001 chr4_850001 RAL-227 1357 chr4 1222377 1222403 chr4 1222610 1222636 11 233 2.0 4.5 3.2 2.6 259 chr4 1222377 exon Mitf + chr4 1222506 exon Mitf + chr4 1222636 exon Mitf + chr4_11_1220001 chr4_1220001 RAL-227 1358 chrX 295857 295878 chrX 303476 303498 412 4 7620 1.5 1.5 1.5 1.6 7641 chrX 295857 intron CG3777 + chrX 299678 intron CG3777 + chrX 303498 intron CG3777 + chrX_4_295001 chrX_295001 RAL-227 1359 chrX 325631 325650 chrX 325716 325730 4 84 2.5 2.0 2.2 1.2 99 chrX 325631 intron,intron CG3777 +,CG32816 - chrX 325680 intron,intron CG3777 +,CG32816 - chrX 325730 intron,intron CG3777 +,CG32816 - chrX_4_325001 chrX_325001 RAL-227 1360 chrX 428416 428452 chrX 434601 434637 3S18 6 6184 3.0 1.5 2.2 1.9 6221 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434637 intron CG32816 - chrX_6_430001 chrX_430001 RAL-227 1361 chrX 440993 441023 chrX 441071 441101 7 78 1.0 1.5 1.2 3.2 108 chrX 440993 intron CG32816 - chrX 441047 intron CG32816 - chrX 441101 intron CG32816 - chrX_7_440001 chrX_440001 RAL-227 1362 chrX 547640 547662 chrX 547884 547906 5 244 3.0 1.5 2.2 1.6 266 chrX 547640 intron Appl + chrX 547773 intron Appl + chrX 547906 intron Appl + chrX_5_545001 chrX_545001 RAL-227 1363 chrX 617984 618005 chrX 618064 618085 6 80 0.5 3.0 1.8 2.1 101 chrX 617984 intron CG13366 - chrX 618034 intron CG13366 - chrX 618085 intron CG13366 - chrX_6_615001 chrX_615001 RAL-227 1364 chrX 667653 667684 chrX 667737 667767 11 83 0.0 1.5 0.8 6.1 114 chrX 667653 intergenic not near genes chrX 667710 intergenic not near genes chrX 667767 intergenic not near genes chrX_11_665001 chrX_665001 RAL-227 1365 chrX 670264 670297 chrX 670344 670375 6 80 0.5 0.0 0.2 5.0 111 chrX 670264 intergenic not near genes chrX 670320 intergenic not near genes chrX 670375 intergenic not near genes chrX_6_670001 chrX_670001 RAL-227 1366 chrX 675528 675564 chrX 675753 675789 14 225 4.5 2.5 3.5 3.1 261 chrX 675528 intergenic not near genes chrX 675658 intergenic not near genes chrX 675789 intergenic not near genes chrX_14_675001 chrX_675001 RAL-227 1367 chrX 680842 680867 chrX 680925 680950 4 83 3.0 3.5 3.2 1.0 108 chrX 680842 intergenic not near genes chrX 680896 intergenic not near genes chrX 680950 intergenic not near genes chrX_4_680001 chrX_680001 RAL-227 1368 chrX 690657 690668 chrX 690989 691000 4 332 1.5 2.0 1.8 1.4 343 chrX 690657 intron sdk + chrX 690828 intron sdk + chrX 691000 intron sdk + chrX_4_690001 chrX_690001 RAL-227 1369 chrX 706817 706825 chrX 707172 707189 4 360 0.0 5.0 2.5 1.1 372 chrX 706817 intron sdk + chrX 707003 intron sdk + chrX 707189 intron sdk + chrX_4_705001 chrX_705001 RAL-227 1370 chrX 718339 718357 chrX 718419 718432 7 78 0.0 2.0 1.0 3.5 93 chrX 718339 intron sdk + chrX 718386 intron sdk + chrX 718432 intron sdk + chrX_7_715001 chrX_715001 RAL-227 1371 chrX 778128 778149 chrX 778218 778239 6 90 2.0 0.0 1.0 3.0 111 chrX 778128 intron fz3 + chrX 778184 intron fz3 + chrX 778239 intron fz3 + chrX_6_775001 chrX_775001 RAL-227 1372 chrX 780595 780603 chrX 780671 780679 5 76 4.0 0.0 2.0 1.7 84 chrX 780595 intron fz3 + chrX 780637 intron fz3 + chrX 780679 intron fz3 + chrX_5_780001 chrX_780001 RAL-227 1373 chrX 802295 802317 chrX 802364 802393 10 74 2.5 3.0 2.8 2.6 98 chrX 802295 exon CG13359 - chrX 802344 exon CG13359 - chrX 802393 exon CG13359 - chrX_10_800001 chrX_800001 RAL-227 1374 chrX 812269 812284 chrX 817897 817910 297 6 5626 0.5 1.0 0.8 3.3 5641 chrX 812269 intron CG43867 - chrX 815090 intron CG43867 - chrX 817910 intron CG43867 - chrX_6_815001 chrX_815001 RAL-227 1375 chrX 827603 827632 chrX 835395 835422 roo 9 7791 4.0 2.0 3.0 2.2 7819 chrX 827603 intron CG43867 - chrX 831512 intron CG43867 - chrX 835422 intron CG43867 - chrX_9_830001 chrX_830001 RAL-227 1376 chrX 868505 868517 chrX 868582 868591 5 76 1.0 2.5 1.8 1.8 86 chrX 868505 intron CG43867 - chrX 868548 intron CG43867 - chrX 868591 intron CG43867 - chrX_5_865001 chrX_865001 RAL-227 1377 chrX 906702 906712 chrX 908491 908501 S-element 5 1789 0.5 8.5 4.5 0.9 1799 chrX 906702 intron CG43867 - chrX 907602 intron CG43867 - chrX 908501 intron CG43867 - chrX_5_905001 chrX_905001 RAL-227 1378 chrX 990219 990243 chrX 990300 990324 7 81 2.5 0.0 1.2 3.2 105 chrX 990219 intergenic CG18823 + chrX 990272 intergenic CG18823 + chrX 990324 intergenic CG18823 + chrX_7_990001 chrX_990001 RAL-227 1379 chrX 1004109 1004127 chrX 1004404 1004422 4 294 1.5 5.0 3.2 1.0 313 chrX 1004109 intergenic not near genes chrX 1004266 intergenic not near genes chrX 1004422 intergenic not near genes chrX_4_1000001 chrX_1000001 RAL-227 1380 chrX 1253731 1253754 chrX 1253812 1253834 4 80 4.5 1.5 3.0 1.0 103 chrX 1253731 intron Atf3 - chrX 1253782 intron Atf3 - chrX 1253834 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-227 1381 chrX 1357785 1357806 chrX 1367954 1367976 Doc 9 10170 0.5 2.0 1.2 4.1 10191 chrX 1357785 intergenic png - chrX 1362880 intergenic not near genes chrX 1367976 intergenic not near genes chrX_9_1360001 chrX_1360001 RAL-227 1382 chrX 1428593 1428626 chrX 1428678 1428709 9 85 1.0 0.5 0.8 5.0 116 chrX 1428593 intron futsch + chrX 1428651 intron futsch + chrX 1428709 intron futsch + chrX_9_1425001 chrX_1425001 RAL-227 1383 chrX 1429617 1429649 chrX 1429695 1429727 6 78 2.5 1.5 2.0 2.0 110 chrX 1429617 intron futsch + chrX 1429672 intron futsch + chrX 1429727 intron futsch + chrX_6_1425001 chrX_1425001 RAL-227 1384 chrX 1518034 1518075 chrX 1523436 1523477 jockey 13 5402 1.5 1.5 1.5 5.2 5443 chrX 1518034 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523477 intergenic not near genes chrX_13_1520001 chrX_1520001 RAL-227 1385 chrX 1627985 1628003 chrX 1635451 1635470 gtwin 5 7467 3.0 4.0 3.5 1.1 7485 chrX 1627985 intron,intron Mur2B -,br + chrX 1631728 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-227 1386 chrX 2053409 2053431 chrX 2053488 2053510 4 79 3.0 3.0 3.0 1.0 101 chrX 2053409 intron CG4313 + chrX 2053460 intron CG4313 + chrX 2053510 intron CG4313 + chrX_4_2050001 chrX_2050001 RAL-227 1387 chrX 2146651 2146684 chrX 2146743 2146777 6 91 4.5 1.5 3.0 1.5 126 chrX 2146651 intron Pgd + chrX 2146714 intron Pgd + chrX 2146777 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-227 1388 chrX 2399838 2399869 chrX 2408191 2408212 roo 5 8346 2.5 0.0 1.2 2.3 8374 chrX 2399838 intergenic not near genes chrX 2404025 intergenic not near genes chrX 2408212 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-227 1389 chrX 2444613 2444644 chrX 2444811 2444840 6 196 8.5 8.0 8.2 0.7 227 chrX 2444613 3` UTR boi - chrX 2444726 3` UTR boi - chrX 2444840 3` UTR boi - chrX_6_2440001 chrX_2440001 RAL-227 1390 chrX 2578827 2578844 chrX 2578919 2578936 8 92 1.0 1.0 1.0 4.0 109 chrX 2578827 intergenic Pdfr +,Vha36-3 - chrX 2578882 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-227 1391 chrX 2870656 2870689 chrX 2870742 2870775 6 86 1.0 0.5 0.8 3.3 119 chrX 2870656 intron kirre + chrX 2870716 intron kirre + chrX 2870775 intron kirre + chrX_6_2870001 chrX_2870001 RAL-227 1392 chrX 3058029 3058050 chrX 3058270 3058291 pogo 4 241 1.0 1.5 1.2 1.8 262 chrX 3058029 intron kirre + chrX 3058160 intron kirre + chrX 3058291 intron kirre + chrX_4_3055001 chrX_3055001 RAL-227 1393 chrX 3271693 3271715 chrX 3271768 3271792 5 76 3.0 1.0 2.0 1.7 99 chrX 3271693 intron dnc + chrX 3271742 intron dnc + chrX 3271792 intron dnc + chrX_5_3270001 chrX_3270001 RAL-227 1394 chrX 3415020 3415051 chrX 3421205 3421236 3S18 9 6185 0.5 3.0 1.8 3.2 6216 chrX 3415020 intron,intron CR44999 +,CG12535 - chrX 3418128 intron,intron CR44999 +,CG12535 - chrX 3421236 intron,intron CR44999 +,CG12535 - chrX_9_3415001 chrX_3415001 RAL-227 1395 chrX 3493093 3493124 chrX 3502252 3502283 roo 7 9158 3.0 2.0 2.5 2.0 9190 chrX 3493093 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502283 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-227 1396 chrX 3597556 3597579 chrX 3619724 3619745 roo 6 22168 1.0 0.0 0.5 4.0 22189 chrX 3597556 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619745 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-227 1397 chrX 3620464 3620493 chrX 3620563 3620592 4 99 1.0 1.0 1.0 2.0 128 chrX 3620464 intron AstA-R1 + chrX 3620528 intron AstA-R1 + chrX 3620592 intron AstA-R1 + chrX_4_3620001 chrX_3620001 RAL-227 1398 chrX 3630552 3630573 chrX 3630628 3630649 7 76 2.5 1.5 2.0 2.3 97 chrX 3630552 intron AstA-R1 + chrX 3630600 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_7_3630001 chrX_3630001 RAL-227 1399 chrX 3657412 3657447 chrX 3657492 3657527 11 79 1.5 1.0 1.2 5.0 115 chrX 3657412 intron AstA-R1 + chrX 3657470 intron AstA-R1 + chrX 3657527 intron AstA-R1 + chrX_11_3655001 chrX_3655001 RAL-227 1400 chrX 3866107 3866137 chrX 3866185 3866215 6 78 1.0 1.0 1.0 3.0 108 chrX 3866107 intron yin - chrX 3866161 intron yin - chrX 3866215 intron yin - chrX_6_3865001 chrX_3865001 RAL-227 1401 chrX 3986870 3986894 chrX 3994503 3994527 412 5 7633 2.5 3.0 2.8 1.3 7657 chrX 3986870 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994527 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-227 1402 chrX 4029533 4029549 chrX 4029723 4029739 7 189 2.5 5.0 3.8 1.5 206 chrX 4029533 intergenic not near genes chrX 4029636 intergenic not near genes chrX 4029739 intergenic not near genes chrX_7_4025001 chrX_4025001 RAL-227 1403 chrX 4048502 4048516 chrX 4048578 4048592 4 76 0.5 1.0 0.8 2.2 90 chrX 4048502 3` UTR CR45482 - chrX 4048547 3` UTR CR45482 - chrX 4048592 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-227 1404 chrX 4132669 4132683 chrX 4132837 4132851 4 168 1.5 0.5 1.0 2.0 182 chrX 4132669 3` UTR GlcAT-I + chrX 4132760 3` UTR GlcAT-I + chrX 4132851 intergenic GlcAT-I +,Fas2 - chrX_4_4130001 chrX_4130001 RAL-227 1405 chrX 4206229 4206242 chrX 4206343 4206356 4 114 1.0 1.0 1.0 2.0 127 chrX 4206229 intergenic Fas2 - chrX 4206292 intergenic Fas2 - chrX 4206356 intergenic Fas2 - chrX_4_4205001 chrX_4205001 RAL-227 1406 chrX 4252946 4252974 chrX 4253034 4253062 5 88 1.0 3.0 2.0 1.7 116 chrX 4252946 intergenic CG15576 - chrX 4253004 intergenic CG15576 - chrX 4253062 intergenic CG15576 - chrX_5_4250001 chrX_4250001 RAL-227 1407 chrX 3765229 3765235 chrX 4343744 4343750 4 578516 3.5 7.0 5.2 0.6 578521 chrX 3765229 intron tlk + chrX 4054490 intergenic not near genes chrX 4343750 intron norpA + chrX_4_4050001 chrX_4050001 RAL-227 1408 chrX 4396973 4397010 chrX 4397058 4397083 8 84 1.5 2.0 1.8 2.9 110 chrX 4396973 intron CR32773 - chrX 4397028 intron CR32773 - chrX 4397083 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-227 1409 chrX 4436461 4436469 chrX 4436537 4436543 4 76 2.5 0.0 1.2 1.8 82 chrX 4436461 intron,intron CR32773 -,bi + chrX 4436502 intron,intron CR32773 -,bi + chrX 4436543 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-227 1410 chrX 4700402 4700425 chrX 4700745 4700768 jockey 4 342 1.5 2.0 1.8 1.4 366 chrX 4700402 3` UTR ctp + chrX 4700585 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-227 1411 chrX 4792381 4792409 chrX 4792814 4792842 jockey 4 433 2.0 1.0 1.5 1.6 461 chrX 4792381 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792842 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-227 1412 chrX 4827968 4828002 chrX 4835338 4835373 Stalker4 9 7367 2.5 0.0 1.2 4.1 7405 chrX 4827968 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835373 intergenic not near genes chrX_9_4830001 chrX_4830001 RAL-227 1413 chrX 4931346 4931378 chrX 4931440 4931472 8 94 22.5 20.5 21.5 0.4 126 chrX 4931346 intron CG44774 - chrX 4931409 intron CG44774 - chrX 4931472 intron CG44774 - chrX_8_4930001 chrX_4930001 RAL-227 1414 chrX 4990045 4990070 chrX 4997259 4997284 roo 7 7214 2.5 2.0 2.2 2.2 7239 chrX 4990045 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997284 intron CR44833 - chrX_7_4990001 chrX_4990001 RAL-227 1415 chrX 5362844 5362852 chrX 5362956 5362964 6 111 0.0 2.0 1.0 3.0 120 chrX 5362844 intron SK + chrX 5362904 intron SK + chrX 5362964 intron SK + chrX_6_5360001 chrX_5360001 RAL-227 1416 chrX 5469614 5469640 chrX 5469783 5469809 5 168 1.5 1.0 1.2 2.3 195 chrX 5469614 intron SPR + chrX 5469712 intron SPR + chrX 5469809 intron SPR + chrX_5_5465001 chrX_5465001 RAL-227 1417 chrX 5524853 5524870 chrX 5528715 5528733 412 4 3863 1.5 0.0 0.8 2.2 3880 chrX 5524853 intergenic snoRNA:Psi28S-3342 - chrX 5526793 intergenic not near genes chrX 5528733 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-227 1418 chrX 5830602 5830619 chrX 5830683 5830701 4 81 1.5 0.0 0.8 2.2 99 chrX 5830602 intron CG15765 + chrX 5830652 intron CG15765 + chrX 5830701 intron CG15765 + chrX_4_5830001 chrX_5830001 RAL-227 1419 chrX 5883817 5883841 chrX 5884058 5884082 pogo 8 241 3.5 2.0 2.8 2.1 265 chrX 5883817 intron CR45668 - chrX 5883950 intron CR45668 - chrX 5884082 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-227 1420 chrX 5884171 5884190 chrX 5884412 5884431 pogo 10 241 4.0 2.5 3.2 2.4 260 chrX 5884171 intron CR45668 - chrX 5884301 intron CR45668 - chrX 5884431 intron CR45668 - chrX_10_5880001 chrX_5880001 RAL-227 1421 chrX 6118697 6118731 chrX 6118779 6118813 9 82 1.5 2.5 2.0 3.0 116 chrX 6118697 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118813 intron Ca-alpha1T - chrX_9_6115001 chrX_6115001 RAL-227 1422 chrX 6168098 6168103 chrX 6168183 6168188 4 85 3.5 0.0 1.8 1.4 90 chrX 6168098 intron Ca-alpha1T - chrX 6168143 intron Ca-alpha1T - chrX 6168188 intron Ca-alpha1T - chrX_4_6165001 chrX_6165001 RAL-227 1423 chrX 6171581 6171604 chrX 6179014 6179027 Quasimodo 4 7430 2.5 1.0 1.8 1.4 7446 chrX 6171581 intron Ca-alpha1T - chrX 6175304 intron Ca-alpha1T - chrX 6179027 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-227 1424 chrX 6198804 6198825 chrX 6198883 6198914 4 86 0.5 2.5 1.5 1.6 110 chrX 6198804 intergenic CG32751 -,CG43090 - chrX 6198859 intergenic CG32751 -,CG43090 - chrX 6198914 intergenic CG32751 -,CG43090 - chrX_4_6195001 chrX_6195001 RAL-227 1425 chrX 6335211 6335242 chrX 6337720 6337752 Tirant 7 2510 1.0 1.5 1.2 3.2 2541 chrX 6335211 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337752 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-227 1426 chrX 6562818 6562841 chrX 6571298 6571322 Tirant 4 8481 3.5 2.0 2.8 1.1 8504 chrX 6562818 intron CG34417 + chrX 6567070 intron CG34417 + chrX 6571322 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-227 1427 chrX 6605482 6605502 chrX 6608504 6608523 Burdock 4 3022 1.0 3.5 2.2 1.2 3041 chrX 6605482 intron pigs + chrX 6607002 intron pigs + chrX 6608523 intron pigs + chrX_4_6605001 chrX_6605001 RAL-227 1428 chrX 6752140 6752157 chrX 6752207 6752238 9 77 2.0 5.0 3.5 2.0 98 chrX 6752140 intron CG14439 + chrX 6752189 intron CG14439 + chrX 6752238 intron CG14439 + chrX_9_6750001 chrX_6750001 RAL-227 1429 chrX 6897583 6897709 chrX 6897661 6897819 7 101 1.0 1.0 1.0 3.5 236 chrX 6897583 intergenic not near genes chrX 6897701 intergenic not near genes chrX 6897819 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-227 1430 chrX 7023599 7023632 chrX 7030989 7031022 Tabor 13 7388 1.5 0.5 1.0 6.5 7423 chrX 7023599 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031022 intron CG12541 - chrX_13_7025001 chrX_7025001 RAL-227 1431 chrX 7125246 7125279 chrX 7134404 7134438 roo 6 9158 0.5 2.5 1.5 2.4 9192 chrX 7125246 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134438 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-227 1432 chrX 7389401 7389404 chrX 7389477 7389480 4 76 5.0 2.0 3.5 0.9 79 chrX 7389401 intron,intron CR44357 -,CG1677 - chrX 7389440 intron,intron CR44357 -,CG1677 - chrX 7389480 intron,intron CR44357 -,CG1677 - chrX_4_7385001 chrX_7385001 RAL-227 1433 chrX 7702919 7702931 chrX 7703358 7703369 jockey 5 438 2.0 4.5 3.2 1.2 450 chrX 7702919 intron CHES-1-like - chrX 7703144 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-227 1434 chrX 7784236 7784244 chrX 7784537 7784539 jockey 6 300 1.5 3.5 2.5 1.7 303 chrX 7784236 intergenic not near genes chrX 7784388 intergenic not near genes chrX 7784539 intergenic not near genes chrX_6_7780001 chrX_7780001 RAL-227 1435 chrX 7845724 7845758 chrX 7847215 7847249 hopper2 4 1491 2.5 1.5 2.0 1.3 1525 chrX 7845724 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847249 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-227 1436 chrX 7960886 7960907 chrX 7960974 7960985 5 87 1.0 3.5 2.2 1.6 99 chrX 7960886 intron,5` UTR sws -,CR45620 + chrX 7960936 intron sws - chrX 7960985 intron sws - chrX_5_7960001 chrX_7960001 RAL-227 1437 chrX 8085574 8085598 chrX 8085660 8085683 7 86 1.5 2.5 2.0 2.3 109 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085628 intron,5` UTR CG2256 -,CR45535 + chrX 8085683 intron,5` UTR CG2256 -,CR45535 + chrX_7_8085001 chrX_8085001 RAL-227 1438 chrX 8092290 8092321 chrX 8092375 8092405 7 84 1.5 1.0 1.2 3.2 115 chrX 8092290 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092405 intron Ubc-E2H - chrX_7_8090001 chrX_8090001 RAL-227 1439 chrX 8708690 8708710 chrX 8708873 8708893 4 183 9.0 5.5 7.2 0.5 203 chrX 8708690 intergenic not near genes chrX 8708792 intergenic not near genes chrX 8708893 intergenic not near genes chrX_4_8705001 chrX_8705001 RAL-227 1440 chrX 8730441 8730468 chrX 8730516 8730544 9 75 1.0 1.0 1.0 4.5 103 chrX 8730441 intergenic not near genes chrX 8730492 intergenic not near genes chrX 8730544 intergenic not near genes chrX_9_8730001 chrX_8730001 RAL-227 1441 chrX 8922335 8922361 chrX 8922762 8922795 jockey 6 431 2.0 4.5 3.2 1.4 460 chrX 8922335 intron rdgA + chrX 8922565 intron rdgA + chrX 8922795 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-227 1442 chrX 8948756 8948788 chrX 8956266 8956298 roo 6 7510 0.5 0.5 0.5 4.0 7542 chrX 8948756 intron rdgA + chrX 8952527 intron rdgA + chrX 8956298 intron rdgA + chrX_6_8950001 chrX_8950001 RAL-227 1443 chrX 9337953 9337973 chrX 9338035 9338064 5 88 0.5 3.0 1.8 1.8 111 chrX 9337953 intron CG34449 - chrX 9338008 intron CG34449 - chrX 9338064 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-227 1444 chrX 9402738 9402769 chrX 9402817 9402847 6 79 2.0 2.0 2.0 2.0 109 chrX 9402738 intron mgl - chrX 9402792 intron mgl - chrX 9402847 intron mgl - chrX_6_9400001 chrX_9400001 RAL-227 1445 chrX 9508143 9508166 chrX 9509661 9509684 jockey 7 1518 2.5 2.0 2.2 2.2 1541 chrX 9508143 intron CG32700 - chrX 9508914 intron CG32700 - chrX 9509684 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-227 1446 chrX 9575794 9575812 chrX 9576118 9576131 mdg3 4 318 1.0 6.0 3.5 0.9 337 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575962 intron,intron CG32699 -,CG42395 - chrX 9576131 intron,exon CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-227 1447 chrX 9577037 9577046 chrX 9577487 9577496 4 450 4.5 0.5 2.5 1.1 459 chrX 9577037 intron CG32699 - chrX 9577266 intron CG32699 - chrX 9577496 intron CG32699 - chrX_4_9575001 chrX_9575001 RAL-227 1448 chrX 9599182 9599201 chrX 9599260 9599278 4 78 3.0 4.0 3.5 0.9 96 chrX 9599182 intergenic not near genes chrX 9599230 intergenic not near genes chrX 9599278 intergenic not near genes chrX_4_9595001 chrX_9595001 RAL-227 1449 chrX 10107315 10107350 chrX 10107391 10107426 4 76 1.0 0.5 0.8 2.2 111 chrX 10107315 intron RhoU + chrX 10107370 intron RhoU + chrX 10107426 intron RhoU + chrX_4_10105001 chrX_10105001 RAL-227 1450 chrX 10154285 10154311 chrX 10154361 10154387 6 76 1.0 1.5 1.2 2.7 102 chrX 10154285 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154387 intron,exon CR44894 -,CG12645 + chrX_6_10150001 chrX_10150001 RAL-227 1451 chrX 10435971 10435990 chrX 10436056 10436075 6 85 0.5 1.0 0.8 3.3 104 chrX 10435971 intron CG32683 - chrX 10436023 intron CG32683 - chrX 10436075 intron CG32683 - chrX_6_10435001 chrX_10435001 RAL-227 1452 chrX 10550344 10550350 chrX 10550422 10550428 4 78 2.5 1.0 1.8 1.4 84 chrX 10550344 intron spri - chrX 10550386 intron spri - chrX 10550428 intron spri - chrX_4_10550001 chrX_10550001 RAL-227 1453 chrX 10550858 10550881 chrX 10552322 10552348 hobo 7 1467 1.0 0.5 0.8 3.9 1490 chrX 10550858 intron spri - chrX 10551603 intron spri - chrX 10552348 intron spri - chrX_7_10550001 chrX_10550001 RAL-227 1454 chrX 10662845 10662866 chrX 10662937 10662948 5 89 1.0 2.0 1.5 2.0 103 chrX 10662845 intron X11Lbeta + chrX 10662896 intron X11Lbeta + chrX 10662948 intron X11Lbeta + chrX_5_10660001 chrX_10660001 RAL-227 1455 chrX 10675233 10675252 chrX 10675293 10675329 6 71 1.0 2.5 1.8 2.1 96 chrX 10675233 intron X11Lbeta + chrX 10675281 intron X11Lbeta + chrX 10675329 intron X11Lbeta + chrX_6_10675001 chrX_10675001 RAL-227 1456 chrX 10686074 10686084 chrX 10691208 10691221 roo 4 5136 3.5 1.5 2.5 1.1 5147 chrX 10686074 intron X11Lbeta + chrX 10688648 intron X11Lbeta + chrX 10691221 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-227 1457 chrX 11034294 11034319 chrX 11034623 11034649 5 329 2.5 0.5 1.5 2.0 355 chrX 11034294 intron CG42339 - chrX 11034472 intron CG42339 - chrX 11034649 intron CG42339 - chrX_5_11030001 chrX_11030001 RAL-227 1458 chrX 11166758 11166789 chrX 11166839 11166869 9 81 1.0 2.0 1.5 3.6 111 chrX 11166758 intergenic not near genes chrX 11166814 intergenic not near genes chrX 11166869 intergenic not near genes chrX_9_11165001 chrX_11165001 RAL-227 1459 chrX 11184252 11184281 chrX 11189328 11189357 flea 5 5076 1.0 0.5 0.8 2.8 5105 chrX 11184252 intergenic not near genes chrX 11186804 intergenic not near genes chrX 11189357 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-227 1460 chrX 11205300 11205318 chrX 11205376 11205394 4 76 3.0 1.5 2.2 1.2 94 chrX 11205300 intergenic not near genes chrX 11205347 intergenic not near genes chrX 11205394 intergenic not near genes chrX_4_11205001 chrX_11205001 RAL-227 1461 chrX 11254168 11254202 chrX 11254279 11254313 8 111 1.5 1.0 1.2 3.6 145 chrX 11254168 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254313 intron CG44422 - chrX_8_11250001 chrX_11250001 RAL-227 1462 chrX 11379767 11379787 chrX 11379911 11379932 5 144 1.5 2.5 2.0 1.7 165 chrX 11379767 intron dlg1 + chrX 11379850 intron dlg1 + chrX 11379932 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-227 1463 chrX 11633415 11633444 chrX 11640469 11640498 297 4 7054 2.5 2.0 2.2 1.2 7083 chrX 11633415 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640498 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-227 1464 chrX 11645112 11645129 chrX 11648282 11648297 NOF 4 3170 3.0 4.0 3.5 0.9 3185 chrX 11645112 intron Ptp10D + chrX 11646704 intron Ptp10D + chrX 11648297 intron Ptp10D + chrX_4_11645001 chrX_11645001 RAL-227 1465 chrX 11684867 11684900 chrX 11684993 11685026 6 126 1.0 1.0 1.0 3.0 159 chrX 11684867 intron bif + chrX 11684946 intron bif + chrX 11685026 intron bif + chrX_6_11680001 chrX_11680001 RAL-227 1466 chrX 11784936 11784951 chrX 11785016 11785031 5 79 3.5 2.0 2.8 1.3 95 chrX 11784936 intergenic not near genes chrX 11784984 intergenic not near genes chrX 11785031 intergenic not near genes chrX_5_11780001 chrX_11780001 RAL-227 1467 chrX 11839048 11839067 chrX 11839284 11839315 5 245 0.0 1.5 0.8 2.8 267 chrX 11839048 intergenic not near genes chrX 11839182 intergenic Cyp28c1 + chrX 11839315 intergenic Cyp28c1 + chrX_5_11835001 chrX_11835001 RAL-227 1468 chrX 12041180 12041198 chrX 12041615 12041635 5 436 3.0 2.0 2.5 1.4 455 chrX 12041180 intergenic not near genes chrX 12041408 intergenic not near genes chrX 12041635 intergenic not near genes chrX_5_12040001 chrX_12040001 RAL-227 1469 chrX 12375490 12375513 chrX 12375588 12375611 7 98 1.0 1.0 1.0 3.5 121 chrX 12375490 intergenic Ir11a - chrX 12375550 intergenic Ir11a - chrX 12375611 exon Ir11a - chrX_7_12375001 chrX_12375001 RAL-227 1470 chrX 13146598 13146624 chrX 13146686 13146712 7 88 1.5 0.5 1.0 3.5 114 chrX 13146598 intron CG32645 + chrX 13146655 intron CG32645 + chrX 13146712 intron CG32645 + chrX_7_13145001 chrX_13145001 RAL-227 1471 chrX 13374841 13374860 chrX 13374918 13374939 6 79 2.0 1.5 1.8 2.1 98 chrX 13374841 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374939 intron CG1640 + chrX_6_13370001 chrX_13370001 RAL-227 1472 chrX 13403023 13403038 chrX 13403150 13403164 X-element 6 126 2.0 1.5 1.8 2.1 141 chrX 13403023 intergenic CG12725 - chrX 13403094 intergenic CG12725 - chrX 13403164 intergenic CG12725 - chrX_6_13400001 chrX_13400001 RAL-227 1473 chrX 13843389 13843409 chrX 13843542 13843560 6 153 2.5 3.5 3.0 1.5 171 chrX 13843389 intron AMPdeam - chrX 13843474 intron AMPdeam - chrX 13843560 intron AMPdeam - chrX_6_13840001 chrX_13840001 RAL-227 1474 chrX 13937980 13937997 chrX 13941251 13941267 I-element 4 3271 1.5 1.0 1.2 1.8 3287 chrX 13937980 intron mamo - chrX 13939624 intron mamo - chrX 13941267 intron mamo - chrX_4_13935001 chrX_13935001 RAL-227 1475 chrX 14411271 14411292 chrX 14411349 14411370 6 78 0.0 4.5 2.2 1.9 99 chrX 14411271 intron dpr8 + chrX 14411320 intron dpr8 + chrX 14411370 intron dpr8 + chrX_6_14410001 chrX_14410001 RAL-227 1476 chrX 14636472 14636493 chrX 14641913 14641934 I-element 4 5441 1.5 2.0 1.8 1.4 5462 chrX 14636472 intron NetA - chrX 14639203 intron NetA - chrX 14641934 intron NetA - chrX_4_14635001 chrX_14635001 RAL-227 1477 chrX 14778039 14778053 chrX 14782836 14782850 Doc 5 4797 3.5 3.5 3.5 1.1 4811 chrX 14778039 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782850 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-227 1478 chrX 14818770 14818796 chrX 14823974 14823996 copia 6 5202 2.5 2.5 2.5 1.7 5226 chrX 14818770 intron rut - chrX 14821383 intron rut - chrX 14823996 intron rut - chrX_6_14820001 chrX_14820001 RAL-227 1479 chrX 14936868 14936893 chrX 14946125 14946149 roo 4 9257 1.0 2.5 1.8 1.4 9281 chrX 14936868 intron pdgy - chrX 14941508 intron pdgy - chrX 14946149 intron pdgy - chrX_4_14940001 chrX_14940001 RAL-227 1480 chrX 15110624 15110652 chrX 15110693 15110732 4 77 1.0 1.5 1.2 1.8 108 chrX 15110624 exon Rab3-GEF + chrX 15110678 intron Rab3-GEF + chrX 15110732 intron Rab3-GEF + chrX_4_15110001 chrX_15110001 RAL-227 1481 chrX 15123297 15123308 chrX 15123423 15123435 6 127 4.0 0.5 2.2 1.9 138 chrX 15123297 intergenic not near genes chrX 15123366 intergenic not near genes chrX 15123435 intergenic not near genes chrX_6_15120001 chrX_15120001 RAL-227 1482 chrX 15413048 15413086 chrX 15417350 15417388 Juan 7 4302 2.0 1.0 1.5 2.8 4340 chrX 15413048 intron Cngl - chrX 15415218 intron Cngl - chrX 15417388 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-227 1483 chrX 15421926 15421952 chrX 15423437 15423463 pogo 4 1511 1.5 2.0 1.8 1.4 1537 chrX 15421926 intron Cngl - chrX 15422694 intron Cngl - chrX 15423463 intron Cngl - chrX_4_15420001 chrX_15420001 RAL-227 1484 chrX 15435689 15435703 chrX 15436122 15436136 rover 4 433 0.0 4.5 2.2 1.2 447 chrX 15435689 intron Cngl - chrX 15435912 intron Cngl - chrX 15436136 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-227 1485 chrX 16295537 16295551 chrX 16295621 16295635 4 84 0.5 0.0 0.2 3.3 98 chrX 16295537 intron CG9911 - chrX 16295586 intron CG9911 - chrX 16295635 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-227 1486 chrX 16476584 16476605 chrX 16476660 16476681 5 75 4.5 1.5 3.0 1.2 97 chrX 16476584 intron para - chrX 16476632 intron para - chrX 16476681 intron para - chrX_5_16475001 chrX_16475001 RAL-227 1487 chrX 16492652 16492679 chrX 16498229 16498256 mdg3 9 5576 3.0 2.5 2.8 2.4 5604 chrX 16492652 intron para - chrX 16495454 intron para - chrX 16498256 intron para - chrX_9_16495001 chrX_16495001 RAL-227 1488 chrX 16623481 16623492 chrX 16623567 16623578 4 86 3.0 0.0 1.5 1.6 97 chrX 16623481 intergenic not near genes chrX 16623530 intergenic Rok - chrX 16623578 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-227 1489 chrX 16689628 16689645 chrX 16689714 16689720 4 81 3.0 1.0 2.0 1.3 92 chrX 16689628 intron Sep4 - chrX 16689674 intron Sep4 - chrX 16689720 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-227 1490 chrX 16815379 16815388 chrX 16815455 16815464 7 76 1.5 2.0 1.8 2.5 85 chrX 16815379 intron CG4829 + chrX 16815422 intron CG4829 + chrX 16815464 intron CG4829 + chrX_7_16815001 chrX_16815001 RAL-227 1491 chrX 16821236 16821265 chrX 16821316 16821345 7 80 1.0 1.0 1.0 3.5 109 chrX 16821236 intron CG4829 + chrX 16821290 intron CG4829 + chrX 16821345 intron CG4829 + chrX_7_16820001 chrX_16820001 RAL-227 1492 chrX 17182263 17182277 chrX 17182342 17182355 6 78 0.5 2.5 1.5 2.4 92 chrX 17182263 intron baz + chrX 17182309 intron baz + chrX 17182355 intron baz + chrX_6_17180001 chrX_17180001 RAL-227 1493 chrX 17229962 17229967 chrX 17230065 17230070 4 103 1.0 3.5 2.2 1.2 108 chrX 17229962 intergenic CG10597 - chrX 17230016 intergenic CG10597 - chrX 17230070 intergenic CG10597 - chrX_4_17230001 chrX_17230001 RAL-227 1494 chrX 17234260 17234275 chrX 17234354 17234367 7 94 1.0 0.0 0.5 4.7 107 chrX 17234260 intron f + chrX 17234314 intron f + chrX 17234367 intron f + chrX_7_17230001 chrX_17230001 RAL-227 1495 chrX 17352592 17352620 chrX 17352694 17352723 8 102 0.0 4.5 2.2 2.5 131 chrX 17352592 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352723 intergenic not near genes chrX_8_17350001 chrX_17350001 RAL-227 1496 chrX 17545003 17545037 chrX 17545085 17545119 7 82 1.5 3.0 2.2 2.2 116 chrX 17545003 intron CG43658 - chrX 17545061 intron CG43658 - chrX 17545119 intron CG43658 - chrX_7_17545001 chrX_17545001 RAL-227 1497 chrX 18429500 18429524 chrX 18434811 18434835 Transpac 6 5311 3.0 1.5 2.2 1.9 5335 chrX 18429500 intergenic not near genes chrX 18432168 intergenic not near genes chrX 18434835 intergenic not near genes chrX_6_18430001 chrX_18430001 RAL-227 1498 chrX 18467227 18467250 chrX 18467391 18467414 8 162 3.0 2.0 2.5 2.3 187 chrX 18467227 intron CG32547 - chrX 18467320 intron CG32547 - chrX 18467414 intron CG32547 - chrX_8_18465001 chrX_18465001 RAL-227 1499 chrX 18486111 18486143 chrX 18486198 18486232 14 88 2.5 4.5 3.5 3.1 121 chrX 18486111 exon psh - chrX 18486172 intron psh - chrX 18486232 intron psh - chrX_14_18485001 chrX_18485001 RAL-227 1500 chrX 18645016 18645040 chrX 18645114 18645138 4 98 3.0 0.5 1.8 1.4 122 chrX 18645016 intron Rip11 - chrX 18645077 intron Rip11 - chrX 18645138 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-227 1501 chrX 18774450 18774468 chrX 18774535 18774553 8 85 2.0 1.0 1.5 3.2 103 chrX 18774450 intergenic CCKLR-17D3 - chrX 18774502 intergenic CCKLR-17D3 - chrX 18774553 intergenic not near genes chrX_8_18770001 chrX_18770001 RAL-227 1502 chrX 18896907 18896942 chrX 18896984 18897011 8 75 1.5 0.5 1.0 4.0 104 chrX 18896907 intergenic CG7349 + chrX 18896959 intergenic CG7349 + chrX 18897011 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-227 1503 chrX 18957070 18957098 chrX 18965733 18965761 roo 4 8663 0.5 0.0 0.2 3.3 8691 chrX 18957070 intron CG43759 + chrX 18961416 intron CG43759 + chrX 18965761 intron CG43759 + chrX_4_18960001 chrX_18960001 RAL-227 1504 chrX 19060407 19060434 chrX 19065191 19065218 Doc 6 4784 1.5 2.0 1.8 2.1 4811 chrX 19060407 intron CG14190 + chrX 19062812 intron CG14190 + chrX 19065218 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-227 1505 chrX 19076385 19076410 chrX 19076534 19076555 7 147 2.5 3.0 2.8 1.8 170 chrX 19076385 intergenic not near genes chrX 19076470 intergenic not near genes chrX 19076555 intergenic not near genes chrX_7_19075001 chrX_19075001 RAL-227 1506 chrX 19099662 19099682 chrX 19099745 19099765 7 82 4.0 0.0 2.0 2.3 103 chrX 19099662 intergenic not near genes chrX 19099714 intergenic not near genes chrX 19099765 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-227 1507 chrX 19131968 19131996 chrX 19132051 19132074 6 82 3.5 2.0 2.8 1.6 106 chrX 19131968 intergenic not near genes chrX 19132021 intergenic not near genes chrX 19132074 intergenic not near genes chrX_6_19130001 chrX_19130001 RAL-227 1508 chrX 19176220 19176233 chrX 19176293 19176316 4 81 2.0 4.0 3.0 1.0 96 chrX 19176220 3` UTR CG7556 - chrX 19176268 3` UTR CG7556 - chrX 19176316 3` UTR CG7556 - chrX_4_19175001 chrX_19175001 RAL-227 1509 chrX 13057298 13057300 chrX 19242812 19242814 19 6185514 4.5 7.0 5.8 2.8 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_19_16150001 chrX_16150001 RAL-227 1510 chrX 19329953 19329984 chrX 19330041 19330072 10 88 1.0 1.5 1.2 4.5 119 chrX 19329953 intron nAChRalpha7 - chrX 19330012 intron nAChRalpha7 - chrX 19330072 intron nAChRalpha7 - chrX_10_19330001 chrX_19330001 RAL-227 1511 chrX 19339756 19339773 chrX 19339832 19339849 4 76 1.0 1.0 1.0 2.0 93 chrX 19339756 intron nAChRalpha7 - chrX 19339802 intron nAChRalpha7 - chrX 19339849 intron nAChRalpha7 - chrX_4_19335001 chrX_19335001 RAL-227 1512 chrX 19472132 19472159 chrX 19472702 19472729 jockey 6 567 2.0 2.0 2.0 2.0 597 chrX 19472132 intergenic kek5 + chrX 19472430 intergenic not near genes chrX 19472729 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-227 1513 chrX 19500571 19500747 chrX 19500648 19500834 7 78 0.5 2.0 1.2 3.2 263 chrX 19500571 intron,intron CG14200 +,Pfrx + chrX 19500702 intron,intron CG14200 +,Pfrx + chrX 19500834 intron,intron CG14200 +,Pfrx + chrX_7_19500001 chrX_19500001 RAL-227 1514 chrX 19576566 19576588 chrX 19576644 19576666 5 78 2.0 6.0 4.0 1.0 100 chrX 19576566 intron Tao - chrX 19576616 intron Tao - chrX 19576666 intron Tao - chrX_5_19575001 chrX_19575001 RAL-227 1515 chrX 19593946 19593973 chrX 19594031 19594058 10 85 4.0 2.5 3.2 2.4 112 chrX 19593946 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594058 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-227 1516 chrX 19662031 19662056 chrX 19662254 19662279 9 223 1.0 2.0 1.5 3.6 248 chrX 19662031 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662279 intron CG14223 - chrX_9_19660001 chrX_19660001 RAL-227 1517 chrX 19710074 19710104 chrX 19711860 19711890 S-element 7 1786 0.5 3.0 1.8 2.5 1816 chrX 19710074 intron meso18E - chrX 19710982 intron meso18E - chrX 19711890 intron meso18E - chrX_7_19710001 chrX_19710001 RAL-227 1518 chrX 19762592 19762617 chrX 19762670 19762697 5 78 1.0 0.5 0.8 2.8 105 chrX 19762592 5` UTR CG12702 - chrX 19762644 5` UTR CG12702 - chrX 19762697 5` UTR CG12702 - chrX_5_19760001 chrX_19760001 RAL-227 1519 chrX 19884096 19884119 chrX 19884171 19884195 4 75 1.0 1.5 1.2 1.8 99 chrX 19884096 intron Hers + chrX 19884146 intron Hers + chrX 19884195 intron Hers + chrX_4_19880001 chrX_19880001 RAL-227 1520 chrX 19992419 19992435 chrX 19992495 19992499 4 73 1.5 4.0 2.8 1.1 80 chrX 19992419 intergenic not near genes chrX 19992459 intergenic not near genes chrX 19992499 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-227 1521 chrX 20041532 20041567 chrX 20041612 20041647 4 80 0.5 1.0 0.8 2.2 115 chrX 20041532 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041647 intron Dop2R - chrX_4_20040001 chrX_20040001 RAL-227 1522 chrX 20052786 20052814 chrX 20052868 20052898 5 83 2.0 0.5 1.2 2.3 112 chrX 20052786 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052898 intron Dop2R - chrX_5_20050001 chrX_20050001 RAL-227 1523 chrX 20065805 20065826 chrX 20065884 20065900 5 77 0.5 0.5 0.5 3.3 95 chrX 20065805 intergenic not near genes chrX 20065852 intergenic not near genes chrX 20065900 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-227 1524 chrX 20384256 20384287 chrX 20384339 20384366 5 82 2.5 1.0 1.8 1.8 110 chrX 20384256 intergenic not near genes chrX 20384311 intergenic not near genes chrX 20384366 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-227 1525 chrX 20528599 20528631 chrX 20528947 20528979 7 348 2.0 2.0 2.0 2.3 380 chrX 20528599 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20528979 intergenic not near genes chrX_7_20525001 chrX_20525001 RAL-227 1526 chrX 20580669 20580690 chrX 20580749 20580768 5 79 1.0 2.0 1.5 2.0 99 chrX 20580669 intergenic not near genes chrX 20580718 intergenic not near genes chrX 20580768 intergenic not near genes chrX_5_20580001 chrX_20580001 RAL-227 1527 chrX 20915045 20915074 chrX 20915216 20915245 6 171 2.0 0.0 1.0 3.0 200 chrX 20915045 intron shakB - chrX 20915145 intron shakB - chrX 20915245 intron shakB - chrX_6_20915001 chrX_20915001 RAL-227 1528 chrX 20940719 20940755 chrX 20942188 20942224 hobo 11 1469 2.0 1.5 1.8 3.9 1505 chrX 20940719 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942224 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-227 1529 chrX 21076344 21076355 chrX 21076409 21076434 4 76 0.0 0.5 0.2 3.3 90 chrX 21076344 intron bves + chrX 21076389 intron bves + chrX 21076434 intron bves + chrX_4_21075001 chrX_21075001 RAL-227 1530 chrX 21086131 21086155 chrX 21087158 21087184 jockey 9 1028 1.0 1.0 1.0 4.5 1053 chrX 21086131 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087184 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-227 1531 chrX 21253290 21253308 chrX 21253366 21253385 5 75 4.0 3.5 3.8 1.0 95 chrX 21253290 intron CG32521 - chrX 21253338 intron CG32521 - chrX 21253385 intron CG32521 - chrX_5_21250001 chrX_21250001 RAL-227 1532 chrX 21328120 21328139 chrX 21328231 21328250 4 111 0.0 1.5 0.8 2.2 130 chrX 21328120 3` UTR CG1486 + chrX 21328185 intergenic CG1486 +,tty - chrX 21328250 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-227 1533 chrX 21334360 21334370 chrX 21334465 21334475 4 105 0.5 1.5 1.0 2.0 115 chrX 21334360 intron tty - chrX 21334418 intron tty - chrX 21334475 intron tty - chrX_4_21330001 chrX_21330001 RAL-227 1534 chrX 21345130 21345147 chrX 21345210 21345228 4 80 2.0 1.5 1.8 1.4 98 chrX 21345130 intergenic fliI +,dod + chrX 21345179 intergenic fliI +,dod + chrX 21345228 intergenic dod +,fliI + chrX_4_21345001 chrX_21345001 RAL-227 1535 chrX 21428350 21428362 chrX 21428539 21428551 4 190 1.0 1.5 1.2 1.8 201 chrX 21428350 intron CG42343 - chrX 21428450 intron CG42343 - chrX 21428551 intron CG42343 - chrX_4_21425001 chrX_21425001 RAL-227 1536 chrX 21516989 21517019 chrX 21517067 21517098 4 78 3.0 1.5 2.2 1.2 109 chrX 21516989 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517098 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-227 1537 chrX 21565413 21565442 chrX 21565491 21565520 5 78 1.0 0.0 0.5 3.3 107 chrX 21565413 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565520 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-227 1538 chrX 21668255 21668286 chrX 21668340 21668371 6 85 1.5 2.0 1.8 2.1 116 chrX 21668255 intergenic not near genes chrX 21668313 intergenic not near genes chrX 21668371 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-227 1539 chrX 22478881 22478892 chrX 22479014 22479025 4 133 0.0 2.5 1.2 1.8 144 chrX 22478881 intron CG12576 - chrX 22478953 intron CG12576 - chrX 22479025 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-227 1540 chrX 22677298 22677328 chrX 22677500 22677537 10 204 1.5 1.5 1.5 4.0 239 chrX 22677298 intron CR44997 + chrX 22677418 intron CR44997 + chrX 22677537 intron CR44997 + chrX_10_22675001 chrX_22675001 RAL-227 1541 chrX 22771506 22771520 chrX 22774797 22774811 297 4 3291 1.5 0.5 1.0 2.0 3305 chrX 22771506 intron CR44997 + chrX 22773158 intron CR44997 + chrX 22774811 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-227 1542 chrX 22796726 22796750 chrX 22796804 22796811 6 76 3.0 1.5 2.2 1.9 85 chrX 22796726 intron CR44997 + chrX 22796768 intron CR44997 + chrX 22796811 intron CR44997 + chrX_6_22795001 chrX_22795001 RAL-227 1543 chrX 22798781 22798799 chrX 22798898 22798909 7 116 1.0 1.5 1.2 3.2 128 chrX 22798781 intergenic not near genes chrX 22798845 intergenic not near genes chrX 22798909 intergenic not near genes chrX_7_22795001 chrX_22795001 RAL-227 1544 chrX 22824232 22824250 chrX 22824358 22824376 4 126 0.0 2.0 1.0 2.0 144 chrX 22824232 intergenic fog - chrX 22824304 intergenic fog - chrX 22824376 3` UTR fog - chrX_4_22820001 chrX_22820001 RAL-227 1545 chrX 22870879 22870899 chrX 22870961 22870983 6 86 1.0 3.5 2.2 1.9 104 chrX 22870879 intron,3` UTR CG42346 +,CR43656 - chrX 22870931 intron,3` UTR CG42346 +,CR43656 - chrX 22870983 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-227