SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
3	chr2L	47423	47473	chr2L	52578	52628	jockey	35	5155	18.0	11.5	14.8	2.2	5205	chr2L	47423	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52628	intron	Cda5 -	chr2L_35_50001	chr2L_50001	RAL-223
10	chr2L	347841	347918	chr2L	355391	355468	blood	24	7550	7.0	6.5	6.8	3.1	7627	chr2L	347841	3` UTR	Plc21C +	chr2L	351654	intron	Plc21C +	chr2L	355468	3` UTR	Plc21C +	chr2L_24_350001	chr2L_350001	RAL-223
14	chr2L	686915	686940	chr2L	696005	696030	roo	10	9090	6.5	15.5	11.0	0.8	9115	chr2L	686915	intron	ds -	chr2L	691472	intron	ds -	chr2L	696030	intron	ds -	chr2L_10_690001	chr2L_690001	RAL-223
17	chr2L	770419	770485	chr2L	772250	772316	Bari1	26	1828	13.0	9.5	11.2	2.1	1897	chr2L	770419	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772316	intergenic	CR44614 +	chr2L_26_770001	chr2L_770001	RAL-223
30	chr2L	976833	976911	chr2L	984519	984597	roo	25	7686	6.5	7.5	7.0	3.1	7764	chr2L	976833	intergenic	not near genes	chr2L	980715	intergenic	not near genes	chr2L	984597	intergenic	not near genes	chr2L_25_980001	chr2L_980001	RAL-223
31	chr2L	996684	996709	chr2L	1005829	1005854	roo	10	9145	3.5	4.0	3.8	2.1	9170	chr2L	996684	intergenic	not near genes	chr2L	1001269	intergenic	not near genes	chr2L	1005854	intergenic	not near genes	chr2L_10_1000001	chr2L_1000001	RAL-223
42	chr2L	1220089	1220151	chr2L	1227605	1227667	blood	25	7516	9.5	8.5	9.0	2.5	7578	chr2L	1220089	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227667	intron	CG42329 +	chr2L_25_1220001	chr2L_1220001	RAL-223
52	chr2L	1570649	1570662	chr2L	1573571	1573584	F-element	7	2922	15.5	11.0	13.2	0.5	2935	chr2L	1570649	intron	haf +	chr2L	1572116	intron	haf +	chr2L	1573584	intron	haf +	chr2L_7_1570001	chr2L_1570001	RAL-223
53	chr2L	1570663	1570714	chr2L	1573570	1573636	F-element	21	2921	9.0	10.5	9.8	1.9	2973	chr2L	1570663	intron	haf +	chr2L	1572150	intron	haf +	chr2L	1573636	intron	haf +	chr2L_21_1570001	chr2L_1570001	RAL-223
57	chr2L	1678916	1679002	chr2L	1686448	1686517	blood	13	7530	0.0	7.0	3.5	2.9	7601	chr2L	1678916	intron	chinmo +	chr2L	1682716	intron	chinmo +	chr2L	1686517	intron	chinmo +	chr2L_13_1680001	chr2L_1680001	RAL-223
58	chr2L	1711314	1711318	chr2L	1711688	1711692	mdg3	6	374	22.0	12.0	17.0	0.3	378	chr2L	1711314	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711503	3` UTR	frtz -	chr2L	1711692	3` UTR	frtz -	chr2L_6_1710001	chr2L_1710001	RAL-223
59	chr2L	1711322	1711381	chr2L	1711684	1711755	mdg3	30	372	12.0	10.0	11.0	2.5	433	chr2L	1711322	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711538	3` UTR	frtz -	chr2L	1711755	exon	frtz -	chr2L_30_1710001	chr2L_1710001	RAL-223
71	chr2L	2100376	2100388	chr2L	2109577	2109589	roo	4	9200	10.5	10.5	10.5	0.3	9213	chr2L	2100376	intron	dpr3 -	chr2L	2104982	intron	dpr3 -	chr2L	2109589	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-223
72	chr2L	2112076	2112139	chr2L	2119778	2119831	opus	20	7702	4.0	7.5	5.8	2.9	7755	chr2L	2112076	intergenic	not near genes	chr2L	2115954	intergenic	not near genes	chr2L	2119831	intergenic	not near genes	chr2L_20_2115001	chr2L_2115001	RAL-223
75	chr2L	2294007	2294031	chr2L	2299262	2299280	copia	5	5249	13.0	12.0	12.5	0.4	5273	chr2L	2294007	intergenic	not near genes	chr2L	2296644	intergenic	not near genes	chr2L	2299280	intergenic	not near genes	chr2L_5_2295001	chr2L_2295001	RAL-223
76	chr2L	2294057	2294070	chr2L	2299253	2299325	copia	5	5243	7.5	9.5	8.5	0.5	5268	chr2L	2294057	intergenic	not near genes	chr2L	2296691	intergenic	not near genes	chr2L	2299325	intergenic	not near genes	chr2L_5_2295001	chr2L_2295001	RAL-223
91	chr2L	2565504	2565562	chr2L	2571627	2571685	297	25	6123	5.0	7.5	6.2	3.5	6181	chr2L	2565504	exon	Cyp309a2 -	chr2L	2568594	intron	Cyp309a2 -	chr2L	2571685	exon	Cyp309a2 -	chr2L_25_2565001	chr2L_2565001	RAL-223
93	chr2L	2661180	2661230	chr2L	2663041	2663073	I-element	19	1872	5.5	5.0	5.2	3.1	1893	chr2L	2661180	intergenic	not near genes	chr2L	2662126	intergenic	not near genes	chr2L	2663073	intergenic	not near genes	chr2L_19_2660001	chr2L_2660001	RAL-223
98	chr2L	2772580	2772588	chr2L	2779214	2779224	297	5	6634	15.0	14.5	14.8	0.3	6644	chr2L	2772580	3` UTR	Syt1 -	chr2L	2775902	intron	Syt1 -	chr2L	2779224	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RAL-223
99	chr2L	2772589	2772619	chr2L	2779211	2779253	297	13	6633	8.5	14.5	11.5	1.0	6664	chr2L	2772589	3` UTR	Syt1 -	chr2L	2775921	intron	Syt1 -	chr2L	2779253	3` UTR	Syt1 -	chr2L_13_2775001	chr2L_2775001	RAL-223
108	chr2L	2933252	2933324	chr2L	2935478	2935548	pogo	26	2227	3.5	14.0	8.8	2.7	2296	chr2L	2933252	intron	lilli +	chr2L	2934400	intron	lilli +	chr2L	2935548	intron	lilli +	chr2L_26_2930001	chr2L_2930001	RAL-223
111	chr2L	3072988	3073054	chr2L	3078241	3078307	copia	38	5253	12.0	16.0	14.0	2.5	5319	chr2L	3072988	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078307	intron	toc -	chr2L_38_3075001	chr2L_3075001	RAL-223
116	chr2L	3202697	3202769	chr2L	3210176	3210221	mdg1	16	7477	6.5	0.0	3.2	3.8	7524	chr2L	3202697	intergenic	not near genes	chr2L	3206459	intergenic	not near genes	chr2L	3210221	intergenic	CR45336 +	chr2L_16_3205001	chr2L_3205001	RAL-223
117	chr2L	3251465	3251515	chr2L	3259080	3259130	springer	16	7614	4.0	10.5	7.2	2.0	7665	chr2L	3251465	intergenic	not near genes	chr2L	3255298	intergenic	not near genes	chr2L	3259130	intergenic	not near genes	chr2L_16_3255001	chr2L_3255001	RAL-223
122	chr2L	3388556	3388623	chr2L	3388847	3388914	pogo	19	291	4.0	9.0	6.5	2.5	358	chr2L	3388556	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388914	intergenic	CG42460 -,CR44791 +	chr2L_19_3385001	chr2L_3385001	RAL-223
133	chr2L	3649748	3649807	chr2L	3655000	3655059	copia	28	5252	4.5	11.5	8.0	3.1	5311	chr2L	3649748	intron	for -	chr2L	3652404	intron	for -	chr2L	3655059	intron	for -	chr2L_28_3650001	chr2L_3650001	RAL-223
149	chr2L	4066001	4066053	chr2L	4068876	4068928	Juan	21	2875	7.0	12.5	9.8	1.9	2927	chr2L	4066001	intron	ed +	chr2L	4067464	intron	ed +	chr2L	4068928	intron	ed +	chr2L_21_4065001	chr2L_4065001	RAL-223
164	chr2L	4601663	4601727	chr2L	4609154	4609218	mdg1	23	7491	10.0	9.0	9.5	2.2	7555	chr2L	4601663	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609218	intron	dp -	chr2L_23_4605001	chr2L_4605001	RAL-223
165	chr2L	4661794	4661846	chr2L	4669424	4669476	opus	21	7630	8.0	12.5	10.2	1.9	7682	chr2L	4661794	intergenic	not near genes	chr2L	4665635	intergenic	not near genes	chr2L	4669476	intergenic	not near genes	chr2L_21_4665001	chr2L_4665001	RAL-223
176	chr2L	4918117	4918197	chr2L	4923240	4923358	jockey	12	5152	4.5	0.5	2.5	3.4	5241	chr2L	4918117	intron	hoe1 -	chr2L	4920738	intron	hoe1 -	chr2L	4923358	intron	hoe1 -	chr2L_12_4920001	chr2L_4920001	RAL-223
178	chr2L	4953479	4953484	chr2L	4953770	4953775	pogo	4	291	16.0	0.0	8.0	0.4	296	chr2L	4953479	intergenic	Jon25Bii -	chr2L	4953627	intergenic	Jon25Bii -	chr2L	4953775	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-223
184	chr2L	5342760	5342796	chr2L	5345155	5345191	Doc	17	2395	0.0	0.5	0.2	14.2	2431	chr2L	5342760	intergenic	not near genes	chr2L	5343976	intergenic	not near genes	chr2L	5345191	intergenic	not near genes	chr2L_17_5340001	chr2L_5340001	RAL-223
198	chr2L	5827670	5827736	chr2L	5836728	5836794	roo	24	9056	9.5	4.0	6.8	3.1	9124	chr2L	5827670	intron	TrissinR +	chr2L	5832232	intron	TrissinR +	chr2L	5836794	intron	TrissinR +	chr2L_24_5830001	chr2L_5830001	RAL-223
221	chr2L	6363111	6363179	chr2L	6366083	6366151	Burdock	26	2972	7.5	6.0	6.8	3.3	3040	chr2L	6363111	intergenic	not near genes	chr2L	6364631	intergenic	not near genes	chr2L	6366151	intergenic	not near genes	chr2L_26_6360001	chr2L_6360001	RAL-223
222	chr2L	6426810	6426885	chr2L	6445120	6445190	roo	36	18309	9.0	5.5	7.2	4.4	18380	chr2L	6426810	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445190	exon	CG9527 -	chr2L_36_6435001	chr2L_6435001	RAL-223
238	chr2L	6876733	6876772	chr2L	6882974	6883013	diver	12	6238	18.5	12.0	15.2	0.7	6280	chr2L	6876733	intron	Nlg2 +	chr2L	6879873	intron	Nlg2 +	chr2L	6883013	intron	Nlg2 +	chr2L_12_6875001	chr2L_6875001	RAL-223
239	chr2L	6876773	6876797	chr2L	6882967	6882972	diver	7	6211	11.0	10.5	10.8	0.6	6199	chr2L	6876773	intron	Nlg2 +	chr2L	6879872	intron	Nlg2 +	chr2L	6882972	intron	Nlg2 +	chr2L_7_6875001	chr2L_6875001	RAL-223
240	chr2L	6991387	6991436	chr2L	6998556	6998605	HMS-Beagle	16	7168	11.5	2.0	6.8	2.1	7218	chr2L	6991387	intron	uif -	chr2L	6994996	intron	uif -	chr2L	6998605	intron	uif -	chr2L_16_6990001	chr2L_6990001	RAL-223
253	chr2L	7343285	7343338	chr2L	7350451	7350498	roo	28	7164	10.0	9.0	9.5	2.7	7213	chr2L	7343285	intron	Wnt6 +	chr2L	7346892	intron	Wnt6 +	chr2L	7350498	intron	Wnt6 +	chr2L_28_7345001	chr2L_7345001	RAL-223
257	chr2L	7548073	7548087	chr2L	7550564	7550578	Burdock	5	2491	10.5	13.5	12.0	0.4	2505	chr2L	7548073	intron	RapGAP1 -	chr2L	7549326	intron	RapGAP1 -	chr2L	7550578	intron	RapGAP1 -	chr2L_5_7545001	chr2L_7545001	RAL-223
259	chr2L	7579190	7579232	chr2L	7579448	7579490	BS	15	258	4.5	6.5	5.5	2.3	300	chr2L	7579190	intergenic	RapGAP1 -	chr2L	7579340	intergenic	RapGAP1 -	chr2L	7579490	intergenic	not near genes	chr2L_15_7575001	chr2L_7575001	RAL-223
268	chr2L	7959000	7959058	chr2L	7960461	7960519	pogo	32	1461	11.0	11.5	11.2	2.6	1519	chr2L	7959000	intron	Snoo -	chr2L	7959760	intron	Snoo -	chr2L	7960519	intron	Snoo -	chr2L_32_7955001	chr2L_7955001	RAL-223
269	chr2L	7977049	7977111	chr2L	7984075	7984137	297	28	7025	9.0	9.0	9.0	2.8	7088	chr2L	7977049	intron	Snoo -	chr2L	7980593	intron	Snoo -	chr2L	7984137	5` UTR,5` UTR	Snoo -,CG7231 +	chr2L_28_7980001	chr2L_7980001	RAL-223
272	chr2L	8013577	8013584	chr2L	8018831	8018838	copia	5	5254	29.5	0.0	14.8	0.3	5261	chr2L	8013577	intron	Tg +	chr2L	8016208	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_5_8015001	chr2L_8015001	RAL-223
273	chr2L	8013619	8013645	chr2L	8023604	8023630	copia	12	9985	15.5	11.5	13.5	0.8	10011	chr2L	8013619	intron	Tg +	chr2L	8018624	intron	Tg +	chr2L	8023630	intron	Tg +	chr2L_12_8015001	chr2L_8015001	RAL-223
274	chr2L	8018817	8018831	chr2L	8023651	8023665	Doc	5	4834	0.0	23.5	11.8	0.4	4848	chr2L	8018817	intron	Tg +	chr2L	8021241	intron	Tg +	chr2L	8023665	intron	Tg +	chr2L_5_8020001	chr2L_8020001	RAL-223
288	chr2L	8452379	8452447	chr2L	8461600	8461668	roo	26	9220	7.5	10.0	8.8	2.7	9289	chr2L	8452379	intron	fu12 -	chr2L	8457024	intron	fu12 -	chr2L	8461668	intron	fu12 -	chr2L_26_8455001	chr2L_8455001	RAL-223
292	chr2L	8594424	8594486	chr2L	8601528	8601590	297	19	7102	8.5	6.5	7.5	2.2	7166	chr2L	8594424	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598007	intron	Sema-1a +	chr2L	8601590	intron	Sema-1a +	chr2L_19_8595001	chr2L_8595001	RAL-223
297	chr2L	8723074	8723132	chr2L	8731501	8731559	Tirant	18	8427	12.0	7.5	9.8	1.7	8485	chr2L	8723074	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731559	intron	raw -	chr2L_18_8725001	chr2L_8725001	RAL-223
307	chr2L	9000238	9000296	chr2L	9007798	9007856	roo	26	7560	12.5	6.0	9.2	2.5	7618	chr2L	9000238	intergenic	Try29F +	chr2L	9004047	intergenic	not near genes	chr2L	9007856	intergenic	not near genes	chr2L_26_9000001	chr2L_9000001	RAL-223
311	chr2L	9217942	9218004	chr2L	9222779	9222848	Doc	18	4842	2.0	3.0	2.5	5.1	4906	chr2L	9217942	intron	tai +	chr2L	9220395	intron	tai +	chr2L	9222848	intron	tai +	chr2L_18_9220001	chr2L_9220001	RAL-223
329	chr2L	9393445	9393521	chr2L	9396463	9396538	jockey	18	3017	8.5	5.5	7.0	2.2	3093	chr2L	9393445	intron	Shawl -	chr2L	9394992	intron	Shawl -	chr2L	9396538	intron	Shawl -	chr2L_18_9390001	chr2L_9390001	RAL-223
344	chr2L	9973684	9973691	chr2L	9980851	9980860	HMS-Beagle	5	7168	19.5	11.0	15.2	0.3	7176	chr2L	9973684	intergenic	not near genes	chr2L	9977272	intergenic	not near genes	chr2L	9980860	intergenic	not near genes	chr2L_5_9975001	chr2L_9975001	RAL-223
345	chr2L	9973694	9973710	chr2L	9980863	9980879	HMS-Beagle	6	7168	17.5	13.0	15.2	0.4	7185	chr2L	9973694	intergenic	not near genes	chr2L	9977286	intergenic	not near genes	chr2L	9980879	intergenic	not near genes	chr2L_6_9975001	chr2L_9975001	RAL-223
346	chr2L	9973711	9973728	chr2L	9980855	9980892	HMS-Beagle	8	7165	13.5	12.0	12.8	0.6	7181	chr2L	9973711	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980892	intergenic	not near genes	chr2L_8_9975001	chr2L_9975001	RAL-223
347	chr2L	9973729	9973756	chr2L	9980847	9980925	HMS-Beagle	14	7165	8.5	10.0	9.2	1.4	7196	chr2L	9973729	intergenic	not near genes	chr2L	9977327	intergenic	not near genes	chr2L	9980925	intergenic	not near genes	chr2L_14_9975001	chr2L_9975001	RAL-223
352	chr2L	10138141	10138182	chr2L	10143435	10143476	Rt1c	19	5293	11.5	16.0	13.8	1.3	5335	chr2L	10138141	intron	CG44153 -	chr2L	10140808	intron	CG44153 -	chr2L	10143476	intron	CG44153 -	chr2L_19_10140001	chr2L_10140001	RAL-223
353	chr2L	10156277	10156348	chr2L	10163797	10163868	blood	39	7518	8.5	9.5	9.0	3.9	7591	chr2L	10156277	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163868	intron	CG44153 -	chr2L_39_10160001	chr2L_10160001	RAL-223
371	chr2L	10592797	10592860	chr2L	10600509	10600574	opus	22	7712	9.0	5.5	7.2	2.7	7777	chr2L	10592797	intron	Trim9 +	chr2L	10596686	intron	Trim9 +	chr2L	10600574	intron	Trim9 +	chr2L_22_10595001	chr2L_10595001	RAL-223
381	chr2L	10862804	10862864	chr2L	10864454	10864518	Rt1c	11	1660	7.5	7.5	7.5	1.3	1714	chr2L	10862804	3` UTR	CR43807 -	chr2L	10863661	intron	CR43807 -	chr2L	10864518	3` UTR	CR43807 -	chr2L_11_10860001	chr2L_10860001	RAL-223
383	chr2L	10876525	10876569	chr2L	10883631	10883675	297	13	7106	8.0	13.0	10.5	1.1	7150	chr2L	10876525	intergenic	not near genes	chr2L	10880100	intergenic	not near genes	chr2L	10883675	intergenic	not near genes	chr2L_13_10880001	chr2L_10880001	RAL-223
386	chr2L	10946910	10946934	chr2L	10956175	10956199	roo	9	9265	16.0	15.0	15.5	0.5	9289	chr2L	10946910	intron	dpr2 -	chr2L	10951554	intron	dpr2 -	chr2L	10956199	intron	dpr2 -	chr2L_9_10950001	chr2L_10950001	RAL-223
387	chr2L	10946936	10946972	chr2L	10956165	10956232	roo	16	9261	9.0	11.5	10.2	1.4	9296	chr2L	10946936	intron	dpr2 -	chr2L	10951584	intron	dpr2 -	chr2L	10956232	intron	dpr2 -	chr2L_16_10950001	chr2L_10950001	RAL-223
397	chr2L	11315219	11315272	chr2L	11317673	11317726	G2	19	2452	8.5	9.0	8.8	1.9	2507	chr2L	11315219	intergenic	not near genes	chr2L	11316472	intergenic	not near genes	chr2L	11317726	intergenic	not near genes	chr2L_19_11315001	chr2L_11315001	RAL-223
408	chr2L	11540546	11540601	chr2L	11547998	11548053	Tabor	9	7452	6.5	7.0	6.8	1.2	7507	chr2L	11540546	intergenic	not near genes	chr2L	11544300	intergenic	not near genes	chr2L	11548053	intergenic	not near genes	chr2L_9_11540001	chr2L_11540001	RAL-223
411	chr2L	11563596	11563654	chr2L	11568850	11568907	copia	20	5254	5.0	8.5	6.8	2.6	5311	chr2L	11563596	intergenic	not near genes	chr2L	11566252	intergenic	not near genes	chr2L	11568907	intergenic	not near genes	chr2L_20_11565001	chr2L_11565001	RAL-223
413	chr2L	11614028	11614062	chr2L	11615573	11615607	hopper2	10	1544	12.0	14.5	13.2	0.7	1579	chr2L	11614028	intron	kek2 +	chr2L	11614818	intron	kek2 +	chr2L	11615607	intron	kek2 +	chr2L_10_11610001	chr2L_11610001	RAL-223
414	chr2L	11614068	11614085	chr2L	11615555	11615572	hopper2	7	1526	7.0	10.5	8.8	0.7	1504	chr2L	11614068	intron	kek2 +	chr2L	11614820	intron	kek2 +	chr2L	11615572	intron	kek2 +	chr2L_7_11610001	chr2L_11610001	RAL-223
417	chr2L	11713464	11713531	chr2L	11720982	11721049	blood	28	7518	4.5	10.5	7.5	3.3	7585	chr2L	11713464	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721049	intergenic	CR44143 +	chr2L_28_11715001	chr2L_11715001	RAL-223
430	chr2L	12067296	12067347	chr2L	12074398	12074449	297	23	7102	10.5	10.5	10.5	2.0	7153	chr2L	12067296	intergenic	not near genes	chr2L	12070872	intergenic	not near genes	chr2L	12074449	intergenic	not near genes	chr2L_23_12070001	chr2L_12070001	RAL-223
459	chr2L	12558271	12558344	chr2L	12565450	12565523	HMS-Beagle	30	7178	6.0	5.0	5.5	4.6	7252	chr2L	12558271	intergenic	not near genes	chr2L	12561897	intergenic	not near genes	chr2L	12565523	intergenic	not near genes	chr2L_30_12560001	chr2L_12560001	RAL-223
466	chr2L	12731016	12731086	chr2L	12735833	12735903	F-element	27	4817	8.0	9.5	8.8	2.8	4887	chr2L	12731016	intron	MRP +	chr2L	12733460	intron	MRP +	chr2L	12735903	intron	MRP +	chr2L_27_12730001	chr2L_12730001	RAL-223
468	chr2L	12739129	12739197	chr2L	12743960	12744028	Doc	27	4830	8.5	9.0	8.8	2.8	4899	chr2L	12739129	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12744028	exon	MRP +	chr2L_27_12740001	chr2L_12740001	RAL-223
470	chr2L	12763782	12763869	chr2L	12764043	12764131	BS	15	262	0.0	0.0	0.0	15.0	349	chr2L	12763782	intergenic	not near genes	chr2L	12763956	intergenic	not near genes	chr2L	12764131	intergenic	not near genes	chr2L_15_12760001	chr2L_12760001	RAL-223
471	chr2L	12781759	12781811	chr2L	12789252	12789304	Quasimodo	24	7493	15.0	8.5	11.8	1.9	7545	chr2L	12781759	intergenic	not near genes	chr2L	12785532	intergenic	not near genes	chr2L	12789304	intergenic	not near genes	chr2L_24_12785001	chr2L_12785001	RAL-223
472	chr2L	12791568	12791624	chr2L	12795293	12795349	F-element	17	3725	5.5	12.5	9.0	1.7	3781	chr2L	12791568	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795349	intergenic	not near genes	chr2L_17_12790001	chr2L_12790001	RAL-223
480	chr2L	12861656	12861698	chr2L	12863173	12863215	hobo	16	1516	15.0	7.0	11.0	1.3	1559	chr2L	12861656	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863215	intergenic	not near genes	chr2L_16_12860001	chr2L_12860001	RAL-223
481	chr2L	12861704	12861730	chr2L	12863171	12863233	hobo	9	1500	5.5	7.0	6.2	1.2	1529	chr2L	12861704	intergenic	not near genes	chr2L	12862468	intergenic	not near genes	chr2L	12863233	intergenic	not near genes	chr2L_9_12860001	chr2L_12860001	RAL-223
484	chr2L	12894006	12894051	chr2L	12895488	12895568	hobo	19	1514	7.0	8.5	7.8	2.2	1562	chr2L	12894006	intergenic	not near genes	chr2L	12894787	intergenic	not near genes	chr2L	12895568	intergenic	not near genes	chr2L_19_12890001	chr2L_12890001	RAL-223
486	chr2L	12933805	12933878	chr2L	12941322	12941395	blood	42	7516	13.0	10.0	11.5	3.4	7590	chr2L	12933805	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941395	intergenic	not near genes	chr2L_42_12935001	chr2L_12935001	RAL-223
495	chr2L	13036199	13036265	chr2L	13036490	13036557	X-element	29	292	10.5	10.0	10.2	2.6	358	chr2L	13036199	intron	CG9932 -	chr2L	13036378	intron	CG9932 -	chr2L	13036557	intron	CG9932 -	chr2L_29_13035001	chr2L_13035001	RAL-223
506	chr2L	13405605	13405670	chr2L	13410452	13410517	Doc	30	4847	8.0	15.0	11.5	2.4	4912	chr2L	13405605	exon	CG7110 +	chr2L	13408061	intron	CG7110 +	chr2L	13410517	exon	CG7110 +	chr2L_30_13405001	chr2L_13405001	RAL-223
509	chr2L	13449425	13449486	chr2L	13456911	13456972	Quasimodo	22	7486	7.5	12.0	9.8	2.0	7547	chr2L	13449425	intron,intron	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456972	intron	CG42784 +	chr2L_22_13450001	chr2L_13450001	RAL-223
510	chr2L	13481413	13481464	chr2L	13482070	13482121	jockey	23	655	14.5	10.5	12.5	1.7	708	chr2L	13481413	intron	CG42784 +	chr2L	13481767	intron	CG42784 +	chr2L	13482121	intron	CG42784 +	chr2L_23_13480001	chr2L_13480001	RAL-223
511	chr2L	13560363	13560421	chr2L	13565234	13565292	F-element	13	4871	9.0	8.5	8.8	1.3	4929	chr2L	13560363	intron	kuz +	chr2L	13562828	intron	kuz +	chr2L	13565292	intron	kuz +	chr2L_13_13560001	chr2L_13560001	RAL-223
517	chr2L	13761769	13761820	chr2L	13762930	13762981	Doc	14	1161	8.0	8.0	8.0	1.6	1212	chr2L	13761769	intron	TM9SF4 +	chr2L	13762375	intron	TM9SF4 +	chr2L	13762981	intron	TM9SF4 +	chr2L_14_13760001	chr2L_13760001	RAL-223
519	chr2L	13853045	13853096	chr2L	13862245	13862296	roo	19	9200	13.5	10.5	12.0	1.5	9251	chr2L	13853045	intron	CenG1A +	chr2L	13857670	intron	CenG1A +	chr2L	13862296	intron	CenG1A +	chr2L_19_13855001	chr2L_13855001	RAL-223
538	chr2L	14618870	14618888	chr2L	14619301	14619319	jockey	6	431	7.5	9.0	8.2	0.7	449	chr2L	14618870	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619094	intron	osp -	chr2L	14619319	intron	osp -	chr2L_6_14615001	chr2L_14615001	RAL-223
539	chr2L	14642530	14642600	chr2L	14651743	14651793	roo	24	9212	11.0	9.5	10.2	2.1	9263	chr2L	14642530	intron	osp -	chr2L	14647162	intron	osp -	chr2L	14651793	intron	osp -	chr2L_24_14645001	chr2L_14645001	RAL-223
546	chr2L	14803833	14803912	chr2L	14809086	14809125	copia	25	5251	7.0	8.0	7.5	2.9	5292	chr2L	14803833	intergenic	not near genes	chr2L	14806479	intergenic	not near genes	chr2L	14809125	intergenic	not near genes	chr2L_25_14805001	chr2L_14805001	RAL-223
551	chr2L	14889905	14889977	chr2L	14890380	14890452	jockey	21	475	9.0	5.5	7.2	2.6	547	chr2L	14889905	intergenic	not near genes	chr2L	14890178	intergenic	not near genes	chr2L	14890452	intergenic	not near genes	chr2L_21_14890001	chr2L_14890001	RAL-223
555	chr2L	14984332	14984392	chr2L	14991984	14992044	opus	23	7651	13.0	8.5	10.8	1.9	7712	chr2L	14984332	intron	mol -	chr2L	14988188	intron	mol -	chr2L	14992044	intron	mol -	chr2L_23_14985001	chr2L_14985001	RAL-223
570	chr2L	15446005	15446062	chr2L	15453524	15453581	blood	15	7519	8.5	0.0	4.2	2.9	7576	chr2L	15446005	intergenic	not near genes	chr2L	15449793	intergenic	not near genes	chr2L	15453581	intergenic	not near genes	chr2L_15_15445001	chr2L_15445001	RAL-223
575	chr2L	15586365	15586430	chr2L	15593467	15593532	297	24	7102	13.0	9.5	11.2	2.0	7167	chr2L	15586365	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593532	intergenic	not near genes	chr2L_24_15585001	chr2L_15585001	RAL-223
582	chr2L	15826846	15826890	chr2L	15829290	15829334	Tabor	17	2444	6.0	9.5	7.8	1.9	2488	chr2L	15826846	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829334	intergenic	not near genes	chr2L_17_15825001	chr2L_15825001	RAL-223
584	chr2L	15955980	15956050	chr2L	15957497	15957567	hobo	21	1514	8.5	7.5	8.0	2.3	1587	chr2L	15955980	intron	beat-Ib -	chr2L	15956774	intron	beat-Ib -	chr2L	15957567	intron	beat-Ib -	chr2L_21_15955001	chr2L_15955001	RAL-223
589	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	33.5	37.0	35.2	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-223
592	chr2L	16141121	16141127	chr2L	16146378	16146384	copia	4	5257	21.0	6.5	13.8	0.3	5263	chr2L	16141121	intergenic	not near genes	chr2L	16143752	intergenic	not near genes	chr2L	16146384	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-223
593	chr2L	16141133	16141187	chr2L	16146377	16146444	copia	27	5256	8.0	6.5	7.2	3.3	5311	chr2L	16141133	intergenic	not near genes	chr2L	16143788	intergenic	not near genes	chr2L	16146444	intergenic	not near genes	chr2L_27_16140001	chr2L_16140001	RAL-223
594	chr2L	16153692	16153742	chr2L	16160810	16160860	297	9	7118	11.5	4.5	8.0	1.0	7168	chr2L	16153692	intergenic	not near genes	chr2L	16157276	intergenic	not near genes	chr2L	16160860	intergenic	not near genes	chr2L_9_16155001	chr2L_16155001	RAL-223
598	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	12	145889	33.5	37.0	35.2	0.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_12_16140001	chr2L_16140001	RAL-223
602	chr2L	16280236	16280281	chr2L	16281457	16281502	1360	21	1219	8.5	12.5	10.5	1.8	1266	chr2L	16280236	intron	crp -	chr2L	16280869	intron	crp -	chr2L	16281502	intron	crp -	chr2L_21_16280001	chr2L_16280001	RAL-223
611	chr2L	16511920	16511985	chr2L	16519084	16519149	HMS-Beagle	25	7163	10.0	9.0	9.5	2.4	7229	chr2L	16511920	intron	CG5953 -	chr2L	16515534	intron	CG5953 -	chr2L	16519149	intron	CG5953 -	chr2L_25_16515001	chr2L_16515001	RAL-223
619	chr2L	16852735	16852806	chr2L	16859926	16859998	Doc4-element	13	7192	0.0	8.5	4.2	2.5	7263	chr2L	16852735	intergenic	CG31810 -	chr2L	16856366	intron	CG31809 -	chr2L	16859998	intergenic	CG6012 -	chr2L_13_16855001	chr2L_16855001	RAL-223
621	chr2L	16958062	16958125	chr2L	16962900	16962963	Doc	27	4838	6.5	9.0	7.8	3.1	4901	chr2L	16958062	intergenic	not near genes	chr2L	16960512	intergenic	not near genes	chr2L	16962963	intergenic	not near genes	chr2L_27_16960001	chr2L_16960001	RAL-223
633	chr2L	17167521	17167584	chr2L	17167812	17167874	pogo	18	291	7.5	8.0	7.8	2.0	353	chr2L	17167521	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167874	intron,intron	CG34106 +,beat-IIIa +	chr2L_18_17165001	chr2L_17165001	RAL-223
636	chr2L	17199119	17199177	chr2L	17200636	17200694	hobo	21	1517	13.5	2.5	8.0	2.3	1575	chr2L	17199119	intron	beat-IIIc -	chr2L	17199906	intron	beat-IIIc -	chr2L	17200694	intron	beat-IIIc -	chr2L_21_17195001	chr2L_17195001	RAL-223
639	chr2L	17273148	17273219	chr2L	17277981	17278052	F-element	31	4832	10.0	8.5	9.2	3.0	4904	chr2L	17273148	intergenic	not near genes	chr2L	17275600	intergenic	not near genes	chr2L	17278052	intergenic	not near genes	chr2L_31_17275001	chr2L_17275001	RAL-223
642	chr2L	17335488	17335499	chr2L	17336719	17336730	1360	7	1231	9.5	8.5	9.0	0.7	1242	chr2L	17335488	intergenic	not near genes	chr2L	17336109	intergenic	not near genes	chr2L	17336730	intergenic	not near genes	chr2L_7_17335001	chr2L_17335001	RAL-223
648	chr2L	17432008	17432039	chr2L	17432165	17432196	1360	4	157	0.0	13.0	6.5	0.5	188	chr2L	17432008	intron	Dif -	chr2L	17432102	intron	Dif -	chr2L	17432196	intron	Dif -	chr2L_4_17430001	chr2L_17430001	RAL-223
654	chr2L	17687468	17687517	chr2L	17692263	17692312	F-element	21	4795	9.5	5.0	7.2	2.6	4844	chr2L	17687468	intron	CadN -	chr2L	17689890	intron	CadN -	chr2L	17692312	intron	CadN -	chr2L_21_17685001	chr2L_17685001	RAL-223
656	chr2L	17727822	17727867	chr2L	17729335	17729384	hobo	13	1516	8.5	11.0	9.8	1.2	1562	chr2L	17727822	intron	CadN -	chr2L	17728603	intron	CadN -	chr2L	17729384	intron	CadN -	chr2L_13_17725001	chr2L_17725001	RAL-223
657	chr2L	17819870	17819944	chr2L	17825123	17825196	copia	18	5253	6.0	6.5	6.2	2.5	5326	chr2L	17819870	intron	CadN2 -	chr2L	17822533	intron	CadN2 -	chr2L	17825196	intron	CadN2 -	chr2L_18_17820001	chr2L_17820001	RAL-223
660	chr2L	17911915	17911985	chr2L	17914143	17914213	pogo	22	2227	3.5	9.5	6.5	2.9	2298	chr2L	17911915	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914213	intergenic	CG43271 -	chr2L_22_17910001	chr2L_17910001	RAL-223
661	chr2L	17951906	17951962	chr2L	17953423	17953479	hobo	36	1517	12.0	14.5	13.2	2.5	1573	chr2L	17951906	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953479	intergenic	not near genes	chr2L_36_17950001	chr2L_17950001	RAL-223
665	chr2L	18051831	18051899	chr2L	18061028	18061096	roo	19	9196	8.5	9.5	9.0	1.9	9265	chr2L	18051831	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061096	intron	rdo +	chr2L_19_18055001	chr2L_18055001	RAL-223
676	chr2L	18407991	18408039	chr2L	18412825	18412873	Doc	25	4834	11.5	9.5	10.5	2.2	4882	chr2L	18407991	intergenic	not near genes	chr2L	18410432	intergenic	not near genes	chr2L	18412873	intergenic	not near genes	chr2L_25_18410001	chr2L_18410001	RAL-223
706	chr2L	19147324	19147392	chr2L	19154409	19154477	297	31	7084	11.0	9.0	10.0	2.8	7153	chr2L	19147324	intron	brat +	chr2L	19150900	intron	brat +	chr2L	19154477	intron	brat +	chr2L_31_19150001	chr2L_19150001	RAL-223
710	chr2L	19344974	19344989	chr2L	19357233	19357248	blood	9	12259	22.5	12.5	17.5	0.5	12274	chr2L	19344974	intron	dnt -	chr2L	19351111	intron	dnt -	chr2L	19357248	intron	dnt -	chr2L_9_19350001	chr2L_19350001	RAL-223
711	chr2L	19344991	19345035	chr2L	19357230	19357294	blood	23	12255	11.0	12.5	11.8	1.8	12303	chr2L	19344991	intron	dnt -	chr2L	19351142	intron	dnt -	chr2L	19357294	intron	dnt -	chr2L_23_19350001	chr2L_19350001	RAL-223
732	chr2L	19652525	19652592	chr2L	19674011	19674078	opus	24	21486	8.5	6.0	7.2	2.9	21553	chr2L	19652525	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674078	intron	Lar +	chr2L_24_19660001	chr2L_19660001	RAL-223
733	chr2L	19703499	19703555	chr2L	19712685	19712741	roo	20	9186	10.0	9.0	9.5	1.9	9242	chr2L	19703499	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712741	intron	Lar +	chr2L_20_19705001	chr2L_19705001	RAL-223
735	chr2L	19762771	19762833	chr2L	19763053	19763125	pogo	30	289	8.5	7.0	7.8	3.4	354	chr2L	19762771	exon	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763125	intron	fbp -	chr2L_30_19760001	chr2L_19760001	RAL-223
750	chr2L	20005832	20005896	chr2L	20010958	20011022	flea	28	5125	8.5	11.5	10.0	2.5	5190	chr2L	20005832	intron	CG43861 -	chr2L	20008427	intron	CG43861 -	chr2L	20011022	intron	CG43861 -	chr2L_28_20005001	chr2L_20005001	RAL-223
764	chr2L	20272083	20272134	chr2L	20282829	20282895	copia	34	10761	12.5	10.5	11.5	2.7	10812	chr2L	20272083	intergenic	not near genes	chr2L	20277489	intergenic	not near genes	chr2L	20282895	intergenic	not near genes	chr2L_34_20275001	chr2L_20275001	RAL-223
766	chr2L	20303164	20303174	chr2L	20310682	20310692	blood	4	7518	0.5	15.0	7.8	0.5	7528	chr2L	20303164	intergenic	not near genes	chr2L	20306928	intergenic	not near genes	chr2L	20310692	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-223
771	chr2L	20372171	20372223	chr2L	20372471	20372502	pogo	13	298	7.5	7.0	7.2	1.6	331	chr2L	20372171	intergenic	Ugt37a1 -	chr2L	20372336	intergenic	Ugt37a1 -	chr2L	20372502	exon	Ugt37a1 -	chr2L_13_20370001	chr2L_20370001	RAL-223
774	chr2L	20568611	20568683	chr2L	20569051	20569123	X-element	19	438	5.5	4.5	5.0	3.2	512	chr2L	20568611	intron	CR45347 +	chr2L	20568867	intron	CR45347 +	chr2L	20569123	intron	CR45347 +	chr2L_19_20565001	chr2L_20565001	RAL-223
775	chr2L	20576177	20576242	chr2L	20583695	20583760	blood	29	7517	7.5	8.5	8.0	3.2	7583	chr2L	20576177	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583760	3` UTR	CR44909 -	chr2L_29_20575001	chr2L_20575001	RAL-223
790	chr2L	20835768	20835834	chr2L	20836535	20836601	Quasimodo	26	767	9.0	9.5	9.2	2.5	833	chr2L	20835768	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836601	intergenic	Spn38F -	chr2L_26_20835001	chr2L_20835001	RAL-223
791	chr2L	20891484	20891546	chr2L	20896635	20896691	jockey	27	5150	6.5	9.5	8.0	3.0	5207	chr2L	20891484	intron,intron	CG43739 -,sky -	chr2L	20894088	intron,intron	CG43739 -,sky -	chr2L	20896691	intron,intron	CG43739 -,sky -	chr2L_27_20890001	chr2L_20890001	RAL-223
794	chr2L	20976607	20976672	chr2L	20981472	20981516	X-element	29	4864	10.0	11.0	10.5	2.5	4909	chr2L	20976607	intron	CG42238 -	chr2L	20979062	intron	CG42238 -	chr2L	20981516	intron	CG42238 -	chr2L_29_20975001	chr2L_20975001	RAL-223
797	chr2L	21020242	21020299	chr2L	21023969	21024000	NOF	24	3725	5.5	7.5	6.5	3.2	3758	chr2L	21020242	intron	CG42238 -	chr2L	21022121	intron	CG42238 -	chr2L	21024000	intron	CG42238 -	chr2L_24_21020001	chr2L_21020001	RAL-223
798	chr2L	21041091	21041157	chr2L	21049402	21049468	Tirant	39	8309	9.0	11.0	10.0	3.5	8377	chr2L	21041091	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049468	intron	CG42238 -	chr2L_39_21045001	chr2L_21045001	RAL-223
802	chr2L	21347508	21347569	chr2L	21355030	21355091	blood	26	7522	12.0	6.0	9.0	2.6	7583	chr2L	21347508	intron	Tsp39D +	chr2L	21351300	intron	Tsp39D +	chr2L	21355091	intron	Tsp39D +	chr2L_26_21350001	chr2L_21350001	RAL-223
806	chr2L	21596984	21597057	chr2L	21604778	21604851	roo	11	7794	7.0	5.5	6.2	1.5	7867	chr2L	21596984	intergenic	not near genes	chr2L	21600918	intergenic	not near genes	chr2L	21604851	intergenic	not near genes	chr2L_11_21600001	chr2L_21600001	RAL-223
807	chr2L	21653152	21653208	chr2L	21656506	21656562	invader4	27	3354	9.0	10.0	9.5	2.6	3410	chr2L	21653152	intergenic	not near genes	chr2L	21654857	intergenic	not near genes	chr2L	21656562	intergenic	not near genes	chr2L_27_21650001	chr2L_21650001	RAL-223
810	chr2L	21691792	21691827	chr2L	21698312	21698349	Burdock	10	6520	14.0	0.5	7.2	1.2	6557	chr2L	21691792	intron	CG31619 +	chr2L	21695070	intron	CG31619 +	chr2L	21698349	intron	CG31619 +	chr2L_10_21695001	chr2L_21695001	RAL-223
818	chr2L	21981642	21981703	chr2L	21990857	21990918	roo	27	9215	8.5	7.5	8.0	3.0	9276	chr2L	21981642	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990918	exon	CG2528 -	chr2L_27_21985001	chr2L_21985001	RAL-223
820	chr2L	22037334	22037401	chr2L	22037676	22037753	INE-1	19	351	6.0	3.0	4.5	3.5	419	chr2L	22037334	intergenic	not near genes	chr2L	22037544	intergenic	CG41434 +	chr2L	22037753	intergenic	CG41434 +	chr2L_19_22035001	chr2L_22035001	RAL-223
828	chr2L	22258572	22258608	chr2L	22260746	22260782	G6	11	2173	19.5	10.0	14.8	0.7	2210	chr2L	22258572	intergenic	Tif-IA +	chr2L	22259677	intergenic	not near genes	chr2L	22260782	intergenic	not near genes	chr2L_11_22255001	chr2L_22255001	RAL-223
829	chr2L	22258613	22258641	chr2L	22260787	22260815	G6	11	2174	9.5	15.0	12.2	0.8	2202	chr2L	22258613	intergenic	Tif-IA +	chr2L	22259714	intergenic	not near genes	chr2L	22260815	intergenic	not near genes	chr2L_11_22255001	chr2L_22255001	RAL-223
832	chr2L	22314850	22314897	chr2L	22318237	22318284	frogger	13	3387	44.0	57.5	50.8	0.3	3434	chr2L	22314850	intron	CG17018 +	chr2L	22316567	intron	CG17018 +	chr2L	22318284	intron	CG17018 +	chr2L_13_22315001	chr2L_22315001	RAL-223
833	chr2L	22515095	22515157	chr2L	22522595	22522657	HMS-Beagle2	19	7499	8.0	7.0	7.5	2.2	7562	chr2L	22515095	intergenic	not near genes	chr2L	22518876	intergenic	not near genes	chr2L	22522657	intergenic	not near genes	chr2L_19_22515001	chr2L_22515001	RAL-223
834	chr2L	22548891	22548935	chr2L	22550139	22550208	1360	12	1263	0.5	6.5	3.5	2.7	1317	chr2L	22548891	intergenic	CG17490 +	chr2L	22549550	intergenic	not near genes	chr2L	22550208	intergenic	CG17493 +	chr2L_12_22545001	chr2L_22545001	RAL-223
838	chr2L	22581929	22582000	chr2L	22583768	22583840	S-element	21	1839	10.5	4.5	7.5	2.5	1911	chr2L	22581929	intron	CG17494 +	chr2L	22582884	intron	CG17494 +	chr2L	22583840	intron	CG17494 +	chr2L_21_22580001	chr2L_22580001	RAL-223
840	chr2L	22719393	22719461	chr2L	22727566	22727634	gypsy2	24	8173	5.5	6.5	6.0	3.4	8241	chr2L	22719393	intron	CG40006 -	chr2L	22723514	intron	CG40006 -	chr2L	22727634	intron	CG40006 -	chr2L_24_22720001	chr2L_22720001	RAL-223
841	chr2L	22776379	22776440	chr2L	22778218	22778278	S-element	11	1839	4.5	6.0	5.2	1.8	1899	chr2L	22776379	intergenic	not near genes	chr2L	22777328	intergenic	not near genes	chr2L	22778278	intergenic	not near genes	chr2L_11_22775001	chr2L_22775001	RAL-223
844	chr2R	469922	469972	chr2R	473213	473263	F-element	6	3290	5.0	6.0	5.5	0.9	3341	chr2R	469922	intergenic	not near genes	chr2R	471592	intergenic	not near genes	chr2R	473263	intergenic	not near genes	chr2R_6_470001	chr2R_470001	RAL-223
845	chr2R	529319	529337	chr2R	537994	538012	Max-element	4	8675	8.0	9.0	8.5	0.4	8693	chr2R	529319	intron	CG40378 +	chr2R	533666	intron	CG40378 +	chr2R	538012	intron	CG40378 +	chr2R_4_530001	chr2R_530001	RAL-223
847	chr2R	552749	552779	chr2R	553974	554009	1360	12	1254	4.0	4.0	4.0	2.4	1260	chr2R	552749	intron	CG40378 +	chr2R	553379	intron	CG40378 +	chr2R	554009	intron	CG40378 +	chr2R_12_550001	chr2R_550001	RAL-223
852	chr2R	1516559	1516602	chr2R	1521337	1521380	1731	22	4778	19.5	18.5	19.0	1.1	4821	chr2R	1516559	exon	Maf1 -	chr2R	1518970	intron	Maf1 -	chr2R	1521380	5` UTR	Maf1 -	chr2R_22_1515001	chr2R_1515001	RAL-223
857	chr2R	2110461	2110502	chr2R	2118069	2118110	17.6	13	7608	15.0	5.0	10.0	1.2	7649	chr2R	2110461	intron	CG17684 -	chr2R	2114286	intron	CG17684 -	chr2R	2118110	intron	CG17684 -	chr2R_13_2110001	chr2R_2110001	RAL-223
858	chr2R	2498945	2499018	chr2R	2508142	2508166	roo	25	9194	5.0	2.5	3.8	5.2	9221	chr2R	2498945	intron	MFS17 -	chr2R	2503556	intron	MFS17 -	chr2R	2508166	intron	MFS17 -	chr2R_25_2500001	chr2R_2500001	RAL-223
860	chr2R	2590046	2590053	chr2R	2590856	2590864	copia	4	811	31.0	36.5	33.8	0.1	818	chr2R	2590046	intergenic	not near genes	chr2R	2590455	intergenic	not near genes	chr2R	2590864	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	RAL-223
861	chr2R	2591488	2591505	chr2R	2594214	2594231	roo	12	2724	51.5	30.0	40.8	0.3	2743	chr2R	2591488	intergenic	not near genes	chr2R	2592860	intergenic	not near genes	chr2R	2594231	intergenic	not near genes	chr2R_12_2590001	chr2R_2590001	RAL-223
862	chr2R	2875365	2875391	chr2R	2878930	2878956	HMS-Beagle	8	3565	33.0	13.5	23.2	0.3	3591	chr2R	2875365	intergenic	not near genes	chr2R	2877160	intergenic	not near genes	chr2R	2878956	intergenic	not near genes	chr2R_8_2875001	chr2R_2875001	RAL-223
865	chr2R	3144055	3144101	chr2R	3393383	3393429	Doc	11	249327	35.0	7.5	21.2	0.5	249374	chr2R	3144055	intron	CG42596 +	chr2R	3268742	intergenic	not near genes	chr2R	3393429	intergenic	not near genes	chr2R_11_3265001	chr2R_3265001	RAL-223
869	chr2R	3532573	3532616	chr2R	3536066	3536109	Doc	7	3493	4.0	5.5	4.8	1.2	3536	chr2R	3532573	intergenic	not near genes	chr2R	3534341	intergenic	not near genes	chr2R	3536109	intergenic	not near genes	chr2R_7_3530001	chr2R_3530001	RAL-223
876	chr2R	4622914	4622977	chr2R	4624123	4624186	1360	27	1208	9.5	8.0	8.8	2.8	1272	chr2R	4622914	intergenic	CR44101 -	chr2R	4623550	intergenic	not near genes	chr2R	4624186	intergenic	not near genes	chr2R_27_4620001	chr2R_4620001	RAL-223
885	chr2R	5417953	5418021	chr2R	5420630	5420703	Burdock	32	2681	6.5	10.0	8.2	3.5	2750	chr2R	5417953	intron	laccase2 +	chr2R	5419328	intron	laccase2 +	chr2R	5420703	intron	laccase2 +	chr2R_32_5415001	chr2R_5415001	RAL-223
891	chr2R	5543198	5543212	chr2R	5547320	5547346	invader1	5	4132	0.0	7.0	3.5	1.1	4148	chr2R	5543198	intron	CG30438 +	chr2R	5545272	intron	CG30438 +	chr2R	5547346	intron	CG30438 +	chr2R_5_5545001	chr2R_5545001	RAL-223
905	chr2R	5869233	5869299	chr2R	5874359	5874425	flea	36	5126	11.0	5.0	8.0	4.0	5192	chr2R	5869233	intergenic	not near genes	chr2R	5871829	intergenic	not near genes	chr2R	5874425	intergenic	not near genes	chr2R_36_5870001	chr2R_5870001	RAL-223
909	chr2R	5902120	5902185	chr2R	5909729	5909794	17.6	13	7609	7.5	8.0	7.8	1.5	7674	chr2R	5902120	5` UTR	CG43366 +	chr2R	5905957	intron	CG43366 +	chr2R	5909794	intron	CG43366 +	chr2R_13_5905001	chr2R_5905001	RAL-223
916	chr2R	6096684	6096749	chr2R	6101921	6101994	BS	33	5243	12.0	9.0	10.5	2.9	5310	chr2R	6096684	intron	EcR -	chr2R	6099339	intron	EcR -	chr2R	6101994	intron	EcR -	chr2R_33_6095001	chr2R_6095001	RAL-223
923	chr2R	6494485	6494548	chr2R	6499297	6499360	F-element	16	4812	4.5	3.0	3.8	3.3	4875	chr2R	6494485	intergenic	not near genes	chr2R	6496922	intergenic	not near genes	chr2R	6499360	intergenic	not near genes	chr2R_16_6495001	chr2R_6495001	RAL-223
927	chr2R	6579736	6579797	chr2R	6584872	6584933	flea	20	5136	5.5	10.5	8.0	2.2	5197	chr2R	6579736	intron	jing +	chr2R	6582334	intron	jing +	chr2R	6584933	intron	jing +	chr2R_20_6580001	chr2R_6580001	RAL-223
940	chr2R	6952117	6952182	chr2R	6959748	6959812	opus	20	7630	11.0	5.0	8.0	2.2	7695	chr2R	6952117	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955964	intron,intron	mim -,CheB42c -	chr2R	6959812	intron,intron	mim -,CheB42c -	chr2R_20_6955001	chr2R_6955001	RAL-223
943	chr2R	7196532	7196585	chr2R	7201357	7201410	F-element	17	4825	14.5	12.0	13.2	1.2	4878	chr2R	7196532	intron	pk +	chr2R	7198971	intron	pk +	chr2R	7201410	intron	pk +	chr2R_17_7195001	chr2R_7195001	RAL-223
944	chr2R	7209844	7209874	chr2R	7217654	7217685	roo	12	7811	7.0	13.5	10.2	1.1	7841	chr2R	7209844	intron	pk +	chr2R	7213764	intron	pk +	chr2R	7217685	intron	pk +	chr2R_12_7210001	chr2R_7210001	RAL-223
945	chr2R	7235777	7235839	chr2R	7240913	7240974	jockey	41	5138	17.5	9.5	13.5	2.8	5197	chr2R	7235777	intergenic	not near genes	chr2R	7238376	intergenic	not near genes	chr2R	7240974	intergenic	not near genes	chr2R_41_7235001	chr2R_7235001	RAL-223
949	chr2R	7262148	7262209	chr2R	7269259	7269318	297	19	7107	8.0	10.0	9.0	1.9	7170	chr2R	7262148	intergenic	not near genes	chr2R	7265733	intergenic	not near genes	chr2R	7269318	intergenic	not near genes	chr2R_19_7265001	chr2R_7265001	RAL-223
956	chr2R	7434856	7434907	chr2R	7439207	7439258	Juan	11	4351	9.5	11.0	10.2	1.0	4402	chr2R	7434856	3` UTR	so +	chr2R	7437057	intergenic	not near genes	chr2R	7439258	intergenic	not near genes	chr2R_11_7435001	chr2R_7435001	RAL-223
958	chr2R	7608360	7608425	chr2R	7613613	7613676	I-element	11	5252	5.5	0.0	2.8	2.9	5316	chr2R	7608360	intron	CG1358 -	chr2R	7611018	intron	CG1358 -	chr2R	7613676	intron	CG1358 -	chr2R_11_7610001	chr2R_7610001	RAL-223
965	chr2R	7815628	7815695	chr2R	7822147	7822214	Burdock	27	6518	6.0	12.5	9.2	2.6	6586	chr2R	7815628	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822214	3` UTR	cathD -	chr2R_27_7815001	chr2R_7815001	RAL-223
968	chr2R	7862187	7862250	chr2R	7867346	7867413	flea	24	5163	5.0	5.5	5.2	3.9	5226	chr2R	7862187	intron	Dgk -	chr2R	7864800	intron	Dgk -	chr2R	7867413	intron	Dgk -	chr2R_24_7860001	chr2R_7860001	RAL-223
969	chr2R	7869150	7869198	chr2R	7873985	7874034	Doc	17	4835	12.5	11.0	11.8	1.3	4884	chr2R	7869150	intron	Dgk -	chr2R	7871592	intron	Dgk -	chr2R	7874034	intron	Dgk -	chr2R_17_7870001	chr2R_7870001	RAL-223
980	chr2R	8160884	8160941	chr2R	8161024	8161081	1360	28	138	7.0	11.5	9.2	2.7	197	chr2R	8160884	exon	CG8708 -	chr2R	8160982	intron	CG8708 -	chr2R	8161081	intron	CG8708 -	chr2R_28_8160001	chr2R_8160001	RAL-223
987	chr2R	8330816	8330889	chr2R	8331352	8331425	roo	35	535	9.5	14.0	11.8	2.7	609	chr2R	8330816	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331425	intron	pdm3 +	chr2R_35_8330001	chr2R_8330001	RAL-223
989	chr2R	8398168	8398234	chr2R	8402999	8403053	Doc	21	4829	8.0	7.0	7.5	2.5	4885	chr2R	8398168	intron	CG2121 -	chr2R	8400610	intron	CG2121 -	chr2R	8403053	intron	CG2121 -	chr2R_21_8400001	chr2R_8400001	RAL-223
990	chr2R	8416267	8416284	chr2R	8417141	8417158	I-element	11	874	21.5	11.5	16.5	0.6	891	chr2R	8416267	intergenic	not near genes	chr2R	8416712	intergenic	CG43296 -	chr2R	8417158	intergenic	CG43296 -	chr2R_11_8415001	chr2R_8415001	RAL-223
991	chr2R	8490560	8490581	chr2R	8492337	8492358	Rt1c	8	1776	14.0	15.5	14.8	0.5	1798	chr2R	8490560	intron	mtt -	chr2R	8491459	intron	mtt -	chr2R	8492358	intron	mtt -	chr2R_8_8490001	chr2R_8490001	RAL-223
997	chr2R	8722732	8722789	chr2R	8723010	8723080	pogo	24	289	6.5	8.5	7.5	2.8	348	chr2R	8722732	intron	CG14767 -	chr2R	8722906	intron	CG14767 -	chr2R	8723080	intron	CG14767 -	chr2R_24_8720001	chr2R_8720001	RAL-223
999	chr2R	8777861	8777935	chr2R	8784102	8784130	diver	24	6239	6.5	8.5	7.5	2.8	6269	chr2R	8777861	intergenic	not near genes	chr2R	8780996	intergenic	not near genes	chr2R	8784130	intergenic	not near genes	chr2R_24_8780001	chr2R_8780001	RAL-223
1007	chr2R	9151274	9151331	chr2R	9157770	9157851	Burdock	22	6518	9.0	8.5	8.8	2.2	6577	chr2R	9151274	exon	CG30345 +	chr2R	9154562	intergenic	not near genes	chr2R	9157851	intergenic	CG8008 -	chr2R_22_9150001	chr2R_9150001	RAL-223
1009	chr2R	9212654	9212717	chr2R	9213190	9213227	roo	25	534	12.5	1.5	7.0	3.1	573	chr2R	9212654	intergenic	CR45309 +	chr2R	9212940	intergenic	CR45309 +	chr2R	9213227	5` UTR	CR45309 +	chr2R_25_9210001	chr2R_9210001	RAL-223
1018	chr2R	9480041	9480073	chr2R	9490622	9490654	roo	11	10581	11.0	6.0	8.5	1.2	10613	chr2R	9480041	intergenic	not near genes	chr2R	9485348	intergenic	not near genes	chr2R	9490654	intergenic	not near genes	chr2R_11_9485001	chr2R_9485001	RAL-223
1028	chr2R	9726571	9726634	chr2R	9734172	9734235	17.6	18	7600	9.5	8.5	9.0	1.8	7664	chr2R	9726571	intron	sqa -	chr2R	9730403	intron	sqa -	chr2R	9734235	intron	sqa -	chr2R_18_9730001	chr2R_9730001	RAL-223
1036	chr2R	9945396	9945464	chr2R	9945642	9945710	BS	24	246	7.5	14.0	10.8	2.0	314	chr2R	9945396	intron	Mef2 -	chr2R	9945553	intron	Mef2 -	chr2R	9945710	intron	Mef2 -	chr2R_24_9945001	chr2R_9945001	RAL-223
1041	chr2R	10005808	10005879	chr2R	10007023	10007094	1360	24	1212	4.0	11.0	7.5	2.8	1286	chr2R	10005808	intron	Pka-R2 -	chr2R	10006451	intron	Pka-R2 -	chr2R	10007094	intron	Pka-R2 -	chr2R_24_10005001	chr2R_10005001	RAL-223
1052	chr2R	10176836	10176904	chr2R	10186053	10186121	roo	24	9217	9.5	8.0	8.8	2.4	9285	chr2R	10176836	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186121	intron	KCNQ -	chr2R_24_10180001	chr2R_10180001	RAL-223
1077	chr2R	10585513	10585583	chr2R	10594146	10594190	Tirant	6	8624	7.0	7.5	7.2	0.7	8677	chr2R	10585513	intron	psq +	chr2R	10589852	intron	psq +	chr2R	10594190	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-223
1083	chr2R	10948014	10948054	chr2R	10955589	10955655	17.6	16	7599	0.0	9.5	4.8	2.8	7641	chr2R	10948014	intergenic	not near genes	chr2R	10951834	intergenic	not near genes	chr2R	10955655	intergenic	not near genes	chr2R_16_10950001	chr2R_10950001	RAL-223
1085	chr2R	10979616	10979683	chr2R	10980137	10980201	297	15	517	5.0	10.5	7.8	1.7	585	chr2R	10979616	intergenic	not near genes	chr2R	10979908	intergenic	not near genes	chr2R	10980201	intergenic	not near genes	chr2R_15_10975001	chr2R_10975001	RAL-223
1086	chr2R	11009787	11009841	chr2R	11019011	11019065	roo	25	9223	10.0	10.0	10.0	2.3	9278	chr2R	11009787	intron	luna -	chr2R	11014426	intron	luna -	chr2R	11019065	intron	luna -	chr2R_25_11010001	chr2R_11010001	RAL-223
1087	chr2R	11019835	11019894	chr2R	11024951	11025010	jockey	19	5114	7.5	5.5	6.5	2.5	5175	chr2R	11019835	intron	luna -	chr2R	11022422	intron	luna -	chr2R	11025010	intron	luna -	chr2R_19_11020001	chr2R_11020001	RAL-223
1088	chr2R	11019896	11019903	chr2R	11024950	11025019	jockey	9	5109	6.0	5.5	5.8	1.3	5123	chr2R	11019896	intron	luna -	chr2R	11022458	intron	luna -	chr2R	11025019	intron	luna -	chr2R_9_11020001	chr2R_11020001	RAL-223
1098	chr2R	11207788	11207823	chr2R	11208031	11208066	BS	21	242	20.0	15.0	17.5	1.1	278	chr2R	11207788	intron	shn +	chr2R	11207927	intron	shn +	chr2R	11208066	intron	shn +	chr2R_21_11205001	chr2R_11205001	RAL-223
1099	chr2R	11207824	11207839	chr2R	11208024	11208082	BS	5	234	16.0	13.5	14.8	0.3	258	chr2R	11207824	intron	shn +	chr2R	11207953	intron	shn +	chr2R	11208082	intron	shn +	chr2R_5_11205001	chr2R_11205001	RAL-223
1105	chr2R	11297579	11297641	chr2R	11301950	11302011	flea	33	4370	11.0	10.0	10.5	2.9	4432	chr2R	11297579	intergenic	CG42336 -	chr2R	11299795	intergenic	not near genes	chr2R	11302011	5` UTR	CG7741 +	chr2R_33_11295001	chr2R_11295001	RAL-223
1109	chr2R	11415478	11415546	chr2R	11418671	11418745	opus	33	3197	9.5	7.5	8.5	3.5	3267	chr2R	11415478	intron	Drip -	chr2R	11417112	intron	Drip -	chr2R	11418745	intron	Drip -	chr2R_33_11415001	chr2R_11415001	RAL-223
1112	chr2R	11472603	11472675	chr2R	11473850	11473922	pogo	31	1247	7.0	7.0	7.0	3.9	1319	chr2R	11472603	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473922	intergenic	not near genes	chr2R_31_11470001	chr2R_11470001	RAL-223
1147	chr2R	12481139	12481162	chr2R	12482940	12482990	roo	12	1833	5.5	10.5	8.0	1.3	1851	chr2R	12481139	exon	Dh44-R2 +	chr2R	12482064	intron	Dh44-R2 +	chr2R	12482990	intron	Dh44-R2 +	chr2R_12_12480001	chr2R_12480001	RAL-223
1148	chr2R	12501664	12501717	chr2R	12503863	12503922	Rt1c	30	2207	10.5	9.0	9.8	2.8	2258	chr2R	12501664	intron	fdl -	chr2R	12502793	intron	fdl -	chr2R	12503922	intron	fdl -	chr2R_30_12500001	chr2R_12500001	RAL-223
1152	chr2R	12707469	12707541	chr2R	12715885	12715957	roo	18	8415	6.0	3.5	4.8	3.1	8488	chr2R	12707469	intron	CG42663 +	chr2R	12711713	intron	CG42663 +	chr2R	12715957	intron	CG42663 +	chr2R_18_12710001	chr2R_12710001	RAL-223
1154	chr2R	12789250	12789322	chr2R	12797663	12797735	roo	28	8408	9.0	5.5	7.2	3.4	8485	chr2R	12789250	intron,3` UTR	sca +,CR45137 -	chr2R	12793492	intron,intron	sca +,CR45137 -	chr2R	12797735	intron,3` UTR	sca +,CR45137 -	chr2R_28_12790001	chr2R_12790001	RAL-223
1156	chr2R	12819414	12819470	chr2R	12824525	12824546	jockey	24	5110	8.5	4.0	6.2	3.3	5132	chr2R	12819414	intergenic	not near genes	chr2R	12821980	intergenic	not near genes	chr2R	12824546	intergenic	not near genes	chr2R_24_12820001	chr2R_12820001	RAL-223
1163	chr2R	13136799	13136819	chr2R	13141647	13141667	Doc	8	4848	19.5	11.5	15.5	0.5	4868	chr2R	13136799	exon	Cap-G +	chr2R	13139233	intron	Cap-G +	chr2R	13141667	intron	Cap-G +	chr2R_8_13135001	chr2R_13135001	RAL-223
1164	chr2R	13136822	13136846	chr2R	13141640	13141694	Doc	9	4843	14.5	10.0	12.2	0.7	4872	chr2R	13136822	exon	Cap-G +	chr2R	13139258	intron	Cap-G +	chr2R	13141694	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	RAL-223
1181	chr2R	13580455	13580521	chr2R	13580855	13580893	jockey	21	398	11.0	5.5	8.2	2.3	438	chr2R	13580455	3` UTR	CG6191 -	chr2R	13580674	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580893	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_21_13580001	chr2R_13580001	RAL-223
1188	chr2R	13728086	13728156	chr2R	13735793	13735863	opus	20	7704	10.0	9.5	9.8	1.9	7777	chr2R	13728086	intron	fas +	chr2R	13731974	intron	fas +	chr2R	13735863	intron	fas +	chr2R_20_13730001	chr2R_13730001	RAL-223
1193	chr2R	13905565	13905629	chr2R	13907597	13907639	Rt1a	19	2028	8.0	10.0	9.0	1.9	2074	chr2R	13905565	intron	shot -	chr2R	13906602	intron	shot -	chr2R	13907639	intron	shot -	chr2R_19_13905001	chr2R_13905001	RAL-223
1207	chr2R	14394189	14394258	chr2R	14399028	14399097	Doc	6	4839	13.0	5.5	9.2	0.6	4908	chr2R	14394189	intergenic	not near genes	chr2R	14396643	intergenic	not near genes	chr2R	14399097	intergenic	not near genes	chr2R_6_14395001	chr2R_14395001	RAL-223
1209	chr2R	14467252	14467317	chr2R	14476443	14476518	roo	22	9200	2.0	7.5	4.8	3.8	9266	chr2R	14467252	intergenic	not near genes	chr2R	14471885	intergenic	not near genes	chr2R	14476518	5` UTR	CR44462 +	chr2R_22_14470001	chr2R_14470001	RAL-223
1210	chr2R	14497363	14497422	chr2R	14498590	14498649	1360	32	1227	5.5	11.0	8.2	3.5	1286	chr2R	14497363	3` UTR	Cpsf160 -	chr2R	14498006	intron	Cpsf160 -	chr2R	14498649	3` UTR	Cpsf160 -	chr2R_32_14495001	chr2R_14495001	RAL-223
1224	chr2R	14889170	14889242	chr2R	14897828	14897892	Max-element	20	8653	8.0	0.0	4.0	4.0	8722	chr2R	14889170	intergenic	Cyp6a8 -	chr2R	14893531	intergenic	not near genes	chr2R	14897892	intergenic	not near genes	chr2R_20_14890001	chr2R_14890001	RAL-223
1234	chr2R	15004682	15004750	chr2R	15005061	15005129	jockey	28	379	9.0	5.5	7.2	3.4	447	chr2R	15004682	intergenic	not near genes	chr2R	15004906	intergenic	not near genes	chr2R	15005129	intergenic	not near genes	chr2R_28_15000001	chr2R_15000001	RAL-223
1235	chr2R	15015415	15015484	chr2R	15022889	15022958	mdg1	37	7474	9.0	0.5	4.8	6.4	7543	chr2R	15015415	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022958	intron	hbs +	chr2R_37_15015001	chr2R_15015001	RAL-223
1238	chr2R	15084933	15085002	chr2R	15092032	15092100	297	16	7098	7.5	6.0	6.8	2.1	7167	chr2R	15084933	intergenic	not near genes	chr2R	15088516	intergenic	not near genes	chr2R	15092100	5` UTR	CR44457 +	chr2R_16_15085001	chr2R_15085001	RAL-223
1239	chr2R	15119272	15119344	chr2R	15127803	15127875	Tirant	20	8530	6.5	7.5	7.0	2.5	8603	chr2R	15119272	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127875	intron	chn +	chr2R_20_15120001	chr2R_15120001	RAL-223
1246	chr2R	15340647	15340664	chr2R	15349280	15349297	Tirant	6	8633	22.0	8.5	15.2	0.4	8650	chr2R	15340647	intron	unc-5 +	chr2R	15344972	intron	unc-5 +	chr2R	15349297	intron	unc-5 +	chr2R_6_15340001	chr2R_15340001	RAL-223
1276	chr2R	16539589	16539613	chr2R	16544845	16544869	copia	11	5256	12.5	0.0	6.2	1.5	5280	chr2R	16539589	intergenic	not near genes	chr2R	16542229	intergenic	not near genes	chr2R	16544869	intergenic	not near genes	chr2R_11_16540001	chr2R_16540001	RAL-223
1293	chr2R	17147196	17147256	chr2R	17152277	17152337	jockey	19	5080	10.5	7.0	8.8	1.9	5141	chr2R	17147196	intergenic	not near genes	chr2R	17149766	intergenic	not near genes	chr2R	17152337	intergenic	not near genes	chr2R_19_17145001	chr2R_17145001	RAL-223
1297	chr2R	17236462	17236530	chr2R	17241716	17241784	copia	23	5253	9.5	8.0	8.8	2.3	5322	chr2R	17236462	intron	mbl +	chr2R	17239123	intron	mbl +	chr2R	17241784	intron	mbl +	chr2R_23_17235001	chr2R_17235001	RAL-223
1308	chr2R	17485872	17485950	chr2R	17490692	17490768	F-element	26	4818	10.0	8.5	9.2	2.5	4896	chr2R	17485872	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488320	intron	NT5E-2 +	chr2R	17490768	intron	NT5E-2 +	chr2R_26_17485001	chr2R_17485001	RAL-223
1312	chr2R	17782317	17782387	chr2R	17783570	17783640	pogo	14	1253	7.0	0.0	3.5	3.1	1323	chr2R	17782317	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783640	intergenic	mir-31a -	chr2R_14_17780001	chr2R_17780001	RAL-223
1313	chr2R	17783978	17784053	chr2R	17784269	17784344	pogo	29	290	5.5	9.0	7.2	3.5	366	chr2R	17783978	intergenic	mir-31a -	chr2R	17784161	intergenic	mir-31a -	chr2R	17784344	intergenic	mir-31a -	chr2R_29_17780001	chr2R_17780001	RAL-223
1314	chr2R	17798375	17798407	chr2R	17798902	17798936	297	5	527	5.5	9.5	7.5	0.6	561	chr2R	17798375	intron	Dhit +	chr2R	17798656	intron	Dhit +	chr2R	17798936	intron	Dhit +	chr2R_5_17795001	chr2R_17795001	RAL-223
1327	chr2R	18045628	18045689	chr2R	18046030	18046091	jockey	24	402	11.5	10.5	11.0	2.0	463	chr2R	18045628	intergenic	not near genes	chr2R	18045860	intergenic	not near genes	chr2R	18046091	intergenic	CG5767 -	chr2R_24_18045001	chr2R_18045001	RAL-223
1328	chr2R	18111649	18111702	chr2R	18115567	18115620	F-element	15	3918	12.5	9.0	10.8	1.3	3971	chr2R	18111649	intergenic	not near genes	chr2R	18113634	intergenic	not near genes	chr2R	18115620	intergenic	not near genes	chr2R_15_18110001	chr2R_18110001	RAL-223
1333	chr2R	18358345	18358423	chr2R	18372607	18372635	roo	22	14259	6.5	5.5	6.0	3.1	14290	chr2R	18358345	intergenic	not near genes	chr2R	18365490	intergenic	not near genes	chr2R	18372635	intergenic	not near genes	chr2R_22_18365001	chr2R_18365001	RAL-223
1338	chr2R	18487788	18487827	chr2R	18495289	18495328	blood	15	7499	10.0	5.5	7.8	1.7	7540	chr2R	18487788	intron	CG30116 -	chr2R	18491558	intron	CG30116 -	chr2R	18495328	intron	CG30116 -	chr2R_15_18490001	chr2R_18490001	RAL-223
1340	chr2R	18575748	18575755	chr2R	18581986	18581993	3S18	6	6238	20.5	8.5	14.5	0.4	6245	chr2R	18575748	intron	GEFmeso -	chr2R	18578870	intron	GEFmeso -	chr2R	18581993	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	RAL-223
1341	chr2R	18575757	18575823	chr2R	18581984	18582061	3S18	20	6233	9.0	7.5	8.2	2.2	6304	chr2R	18575757	intron	GEFmeso -	chr2R	18578909	intron	GEFmeso -	chr2R	18582061	intron	GEFmeso -	chr2R_20_18575001	chr2R_18575001	RAL-223
1343	chr2R	18590819	18590891	chr2R	18600021	18600093	roo	32	9201	7.5	7.5	7.5	3.8	9274	chr2R	18590819	intron	GEFmeso -	chr2R	18595456	intron	GEFmeso -	chr2R	18600093	intron	GEFmeso -	chr2R_32_18595001	chr2R_18595001	RAL-223
1366	chr2R	19715805	19715854	chr2R	19723324	19723373	blood	19	7519	13.0	8.0	10.5	1.7	7568	chr2R	19715805	intergenic	not near genes	chr2R	19719589	intergenic	not near genes	chr2R	19723373	intergenic	not near genes	chr2R_19_19715001	chr2R_19715001	RAL-223
1368	chr2R	19776578	19776586	chr2R	19779951	19779959	jockey	5	3373	13.0	15.5	14.2	0.3	3381	chr2R	19776578	intergenic	not near genes	chr2R	19778268	intergenic	not near genes	chr2R	19779959	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	RAL-223
1369	chr2R	19776591	19776614	chr2R	19779923	19779987	jockey	18	3367	9.5	11.5	10.5	1.6	3396	chr2R	19776591	intergenic	not near genes	chr2R	19778289	intergenic	not near genes	chr2R	19779987	intergenic	not near genes	chr2R_18_19775001	chr2R_19775001	RAL-223
1374	chr2R	19914806	19914877	chr2R	19922268	19922339	mdg1	12	7462	4.5	6.0	5.2	1.9	7533	chr2R	19914806	intergenic	not near genes	chr2R	19918572	intergenic	not near genes	chr2R	19922339	intergenic	not near genes	chr2R_12_19915001	chr2R_19915001	RAL-223
1377	chr2R	19957383	19957459	chr2R	19962635	19962711	copia	15	5249	5.0	8.5	6.8	1.9	5328	chr2R	19957383	intergenic	CG44623 +	chr2R	19960047	intergenic	not near genes	chr2R	19962711	intergenic	not near genes	chr2R_15_19960001	chr2R_19960001	RAL-223
1378	chr2R	20069201	20069270	chr2R	20071881	20071936	opus	35	2679	9.5	13.5	11.5	2.8	2735	chr2R	20069201	intergenic	not near genes	chr2R	20070568	intergenic	not near genes	chr2R	20071936	intergenic	not near genes	chr2R_35_20070001	chr2R_20070001	RAL-223
1380	chr2R	20087982	20088027	chr2R	20088140	20088185	1360	9	158	5.0	0.0	2.5	2.6	203	chr2R	20087982	intergenic	not near genes	chr2R	20088084	intergenic	not near genes	chr2R	20088185	intergenic	not near genes	chr2R_9_20085001	chr2R_20085001	RAL-223
1385	chr2R	20368468	20368496	chr2R	20377681	20377709	roo	13	9213	14.5	10.0	12.2	1.0	9241	chr2R	20368468	intergenic	not near genes	chr2R	20373088	intergenic	not near genes	chr2R	20377709	intergenic	not near genes	chr2R_13_20370001	chr2R_20370001	RAL-223
1401	chr2R	20739390	20739469	chr2R	20744208	20744287	F-element	34	4816	9.5	8.0	8.8	3.5	4897	chr2R	20739390	intron	dpr +	chr2R	20741838	intron	dpr +	chr2R	20744287	intron	dpr +	chr2R_34_20740001	chr2R_20740001	RAL-223
1402	chr2R	20783264	20783320	chr2R	20788086	20788142	F-element	25	4822	8.5	7.0	7.8	2.8	4878	chr2R	20783264	intergenic	not near genes	chr2R	20785703	intergenic	not near genes	chr2R	20788142	intergenic	CG43666 -	chr2R_25_20785001	chr2R_20785001	RAL-223
1414	chr2R	21151108	21151146	chr2R	21153797	21153856	opus	5	2706	0.5	7.5	4.0	1.0	2748	chr2R	21151108	intron	CG30389 -	chr2R	21152482	intron	CG30389 -	chr2R	21153856	intron	CG30389 -	chr2R_5_21150001	chr2R_21150001	RAL-223
1436	chr2R	21738233	21738303	chr2R	21747443	21747513	roo	18	9205	6.5	7.5	7.0	2.2	9280	chr2R	21738233	intergenic	not near genes	chr2R	21742873	intergenic	not near genes	chr2R	21747513	intergenic	not near genes	chr2R_18_21740001	chr2R_21740001	RAL-223
1437	chr2R	21753041	21753058	chr2R	21753576	21753593	roo	7	534	18.0	12.0	15.0	0.4	552	chr2R	21753041	intergenic	not near genes	chr2R	21753317	intergenic	not near genes	chr2R	21753593	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-223
1438	chr2R	21753061	21753110	chr2R	21753596	21753645	roo	26	535	7.5	16.0	11.8	2.0	584	chr2R	21753061	intergenic	not near genes	chr2R	21753353	intergenic	not near genes	chr2R	21753645	intergenic	not near genes	chr2R_26_21750001	chr2R_21750001	RAL-223
1441	chr2R	21809473	21809507	chr2R	21817763	21817797	roo	13	8289	9.5	9.0	9.2	1.3	8324	chr2R	21809473	intergenic	not near genes	chr2R	21813635	intergenic	not near genes	chr2R	21817797	intergenic	not near genes	chr2R_13_21810001	chr2R_21810001	RAL-223
1456	chr2R	22349650	22349720	chr2R	22351484	22351554	jockey	22	1833	6.5	12.5	9.5	2.1	1904	chr2R	22349650	intron	Liprin-gamma -	chr2R	22350602	intron	Liprin-gamma -	chr2R	22351554	intron	Liprin-gamma -	chr2R_22_22350001	chr2R_22350001	RAL-223
1458	chr2R	22360336	22360345	chr2R	22360819	22360828	jockey	4	483	14.0	8.0	11.0	0.3	492	chr2R	22360336	intron	Liprin-gamma -	chr2R	22360582	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-223
1462	chr2R	22465275	22465345	chr2R	22465518	22465593	BS	20	242	10.0	4.0	7.0	2.5	318	chr2R	22465275	intron	CG10384 +	chr2R	22465434	intron	CG10384 +	chr2R	22465593	intron	CG10384 +	chr2R_20_22465001	chr2R_22465001	RAL-223
1467	chr2R	22580418	22580445	chr2R	22586612	22586644	diver	13	6199	0.0	8.0	4.0	2.6	6226	chr2R	22580418	intron	dnr1 -	chr2R	22583531	intron	dnr1 -	chr2R	22586644	intron	dnr1 -	chr2R_13_22580001	chr2R_22580001	RAL-223
1471	chr2R	22774911	22774986	chr2R	22775380	22775455	jockey	37	469	9.5	8.0	8.8	3.8	544	chr2R	22774911	intron	CG42260 -	chr2R	22775183	intron	CG42260 -	chr2R	22775455	intron	CG42260 -	chr2R_37_22775001	chr2R_22775001	RAL-223
1474	chr2R	22842986	22843045	chr2R	22844998	22845057	flea	20	2010	11.0	11.5	11.2	1.6	2071	chr2R	22842986	intergenic	CG9826 +	chr2R	22844022	intergenic	not near genes	chr2R	22845057	intergenic	not near genes	chr2R_20_22840001	chr2R_22840001	RAL-223
1480	chr2R	22958765	22958804	chr2R	22963896	22963945	flea	13	5134	10.5	14.0	12.2	1.0	5180	chr2R	22958765	intergenic	not near genes	chr2R	22961355	intergenic	not near genes	chr2R	22963945	intergenic	not near genes	chr2R_13_22960001	chr2R_22960001	RAL-223
1495	chr2R	23402586	23402611	chr2R	23407683	23407708	flea	12	5097	6.0	9.5	7.8	1.4	5122	chr2R	23402586	intergenic	CG3520 -	chr2R	23405147	intergenic	not near genes	chr2R	23407708	intergenic	not near genes	chr2R_12_23405001	chr2R_23405001	RAL-223
1504	chr2R	23529530	23529590	chr2R	23537156	23537216	412	25	7622	11.0	11.0	11.0	2.1	7686	chr2R	23529530	exon	bw -	chr2R	23533373	intron	bw -	chr2R	23537216	exon	bw -	chr2R_25_23530001	chr2R_23530001	RAL-223
1513	chr2R	23914264	23914324	chr2R	23921938	23921998	412	29	7673	8.0	10.0	9.0	2.9	7734	chr2R	23914264	exon	kcc +	chr2R	23918131	intron	kcc +	chr2R	23921998	exon	kcc +	chr2R_29_23915001	chr2R_23915001	RAL-223
1520	chr2R	24147035	24147096	chr2R	24154648	24154724	412	24	7626	4.5	10.5	7.5	2.8	7689	chr2R	24147035	intron	Dat +	chr2R	24150880	intron	Dat +	chr2R	24154724	intron	Dat +	chr2R_24_24150001	chr2R_24150001	RAL-223
1521	chr2R	24177188	24177261	chr2R	24184723	24184796	412	34	7532	12.5	15.0	13.8	2.3	7608	chr2R	24177188	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184796	intron	Nop60B +	chr2R_34_24180001	chr2R_24180001	RAL-223
1525	chr2R	24272799	24272806	chr2R	24272907	24272934	roo	5	119	11.0	20.5	15.8	0.3	135	chr2R	24272799	intergenic	not near genes	chr2R	24272866	intergenic	not near genes	chr2R	24272934	intergenic	not near genes	chr2R_5_24270001	chr2R_24270001	RAL-223
1529	chr2R	24353384	24353415	chr2R	24361796	24361827	roo	15	8412	16.0	13.5	14.8	0.9	8443	chr2R	24353384	intron,intron	bs +,CR44811 -	chr2R	24357606	intron,intron	bs +,CR44811 -	chr2R	24361827	intron,intron	bs +,CR44811 -	chr2R_15_24355001	chr2R_24355001	RAL-223
1539	chr2R	24647546	24647615	chr2R	24655153	24655222	412	25	7605	10.5	9.5	10.0	2.3	7676	chr2R	24647546	intergenic	not near genes	chr2R	24651384	intergenic	not near genes	chr2R	24655222	intergenic	not near genes	chr2R_25_24650001	chr2R_24650001	RAL-223
1541	chr2R	24727839	24727844	chr2R	24735397	24735402	mdg1	5	7558	14.5	9.0	11.8	0.4	7563	chr2R	24727839	intron	Mid1 -	chr2R	24731620	intron	Mid1 -	chr2R	24735402	intron	Mid1 -	chr2R_5_24730001	chr2R_24730001	RAL-223
1542	chr2R	24727845	24727917	chr2R	24735393	24735419	mdg1	28	7551	4.5	8.5	6.5	3.7	7574	chr2R	24727845	intron	Mid1 -	chr2R	24731632	intron	Mid1 -	chr2R	24735419	intron	Mid1 -	chr2R_28_24730001	chr2R_24730001	RAL-223
1543	chr2R	24763569	24763595	chr2R	24765594	24765604	G2	7	2021	16.0	7.0	11.5	0.6	2035	chr2R	24763569	exon	CG3894 +	chr2R	24764586	intron	CG3894 +	chr2R	24765604	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	RAL-223
1544	chr2R	24763597	24763631	chr2R	24765588	24765647	G2	10	2021	7.5	7.0	7.2	1.2	2050	chr2R	24763597	exon	CG3894 +	chr2R	24764622	intron	CG3894 +	chr2R	24765647	exon	CG3894 +	chr2R_10_24760001	chr2R_24760001	RAL-223
1562	chr2R	25141611	25141677	chr2R	25159351	25159417	roo	29	17739	9.5	11.0	10.2	2.6	17806	chr2R	25141611	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159417	intergenic	not near genes	chr2R_29_25150001	chr2R_25150001	RAL-223
1569	chr3L	110166	110238	chr3L	119383	119455	roo	22	9217	6.0	10.5	8.2	2.4	9289	chr3L	110166	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119455	intergenic	not near genes	chr3L_22_110001	chr3L_110001	RAL-223
1575	chr3L	402654	402710	chr3L	409751	409813	297	30	7103	7.5	13.5	10.5	2.6	7159	chr3L	402654	intergenic	not near genes	chr3L	406234	intergenic	not near genes	chr3L	409813	intergenic	not near genes	chr3L_30_405001	chr3L_405001	RAL-223
1585	chr3L	660107	660146	chr3L	660249	660284	roo	12	140	9.0	15.0	12.0	0.9	177	chr3L	660107	intergenic	not near genes	chr3L	660196	intergenic	not near genes	chr3L	660284	intergenic	not near genes	chr3L_12_660001	chr3L_660001	RAL-223
1591	chr3L	789871	789931	chr3L	790399	790459	roo	15	528	0.0	0.0	0.0	15.0	588	chr3L	789871	intergenic	not near genes	chr3L	790165	intergenic	not near genes	chr3L	790459	intergenic	not near genes	chr3L_15_790001	chr3L_790001	RAL-223
1593	chr3L	857958	858026	chr3L	866488	866525	Tirant	30	8524	9.5	6.5	8.0	3.3	8567	chr3L	857958	intergenic	not near genes	chr3L	862242	intergenic	not near genes	chr3L	866525	5` UTR	CG12502 +	chr3L_30_860001	chr3L_860001	RAL-223
1594	chr3L	925130	925201	chr3L	932606	932677	mdg1	36	7476	6.5	8.0	7.2	4.4	7547	chr3L	925130	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932677	intron	Glut1 +	chr3L_36_925001	chr3L_925001	RAL-223
1596	chr3L	939730	939769	chr3L	940901	940940	jockey	16	1171	10.0	9.0	9.5	1.5	1210	chr3L	939730	intron	Glut1 +	chr3L	940335	intron	Glut1 +	chr3L	940940	intron	Glut1 +	chr3L_16_940001	chr3L_940001	RAL-223
1597	chr3L	939770	939795	chr3L	940897	940966	jockey	11	1167	8.0	8.5	8.2	1.2	1196	chr3L	939770	intron	Glut1 +	chr3L	940368	intron	Glut1 +	chr3L	940966	intron	Glut1 +	chr3L_11_940001	chr3L_940001	RAL-223
1605	chr3L	1047315	1047379	chr3L	1055177	1055211	412	20	7858	9.0	8.5	8.8	2.0	7896	chr3L	1047315	intron	bab1 -	chr3L	1051263	intron	bab1 -	chr3L	1055211	intron	bab1 -	chr3L_20_1050001	chr3L_1050001	RAL-223
1607	chr3L	1154088	1154153	chr3L	1163288	1163353	roo	30	9199	11.0	10.5	10.8	2.5	9265	chr3L	1154088	intron	bab2 -	chr3L	1158720	intron	bab2 -	chr3L	1163353	intron	bab2 -	chr3L_30_1155001	chr3L_1155001	RAL-223
1611	chr3L	1219555	1219614	chr3L	1227338	1227397	412	37	7782	10.5	17.5	14.0	2.5	7842	chr3L	1219555	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227397	intron	mwh +	chr3L_37_1220001	chr3L_1220001	RAL-223
1626	chr3L	1424762	1424769	chr3L	1430064	1430071	Rt1a	4	5302	0.0	17.0	8.5	0.4	5309	chr3L	1424762	intron	Ptp61F -	chr3L	1427416	intron	Ptp61F -	chr3L	1430071	intron	Ptp61F -	chr3L_4_1425001	chr3L_1425001	RAL-223
1628	chr3L	1485687	1485733	chr3L	1486908	1486954	1360	20	1220	11.5	12.0	11.8	1.6	1267	chr3L	1485687	intron	stet -	chr3L	1486320	intron	stet -	chr3L	1486954	intron	stet -	chr3L_20_1485001	chr3L_1485001	RAL-223
1631	chr3L	1505959	1506021	chr3L	1513606	1513668	17.6	25	7647	9.5	8.5	9.0	2.5	7709	chr3L	1505959	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513668	intron,intron	Psa +,cue -	chr3L_25_1505001	chr3L_1505001	RAL-223
1639	chr3L	1740815	1740877	chr3L	1741103	1741170	pogo	26	291	14.0	12.5	13.2	1.8	355	chr3L	1740815	intron	Gk +	chr3L	1740992	intron	Gk +	chr3L	1741170	intron	Gk +	chr3L_26_1740001	chr3L_1740001	RAL-223
1658	chr3L	2447458	2447526	chr3L	2456664	2456732	roo	40	9204	11.0	12.5	11.8	3.1	9274	chr3L	2447458	intron	CG45186 +	chr3L	2452095	intron	CG45186 +	chr3L	2456732	intron	CG45186 +	chr3L_40_2450001	chr3L_2450001	RAL-223
1671	chr3L	2751413	2751458	chr3L	2755758	2755803	F-element	24	4345	7.0	17.5	12.2	1.8	4390	chr3L	2751413	intron	Mrtf -	chr3L	2753608	intron	Mrtf -	chr3L	2755803	intron	Mrtf -	chr3L_24_2750001	chr3L_2750001	RAL-223
1677	chr3L	2927795	2927860	chr3L	2936122	2936187	Tirant	23	8326	7.5	7.5	7.5	2.7	8392	chr3L	2927795	intron	Shab +	chr3L	2931991	intron	Shab +	chr3L	2936187	intron	Shab +	chr3L_23_2930001	chr3L_2930001	RAL-223
1679	chr3L	2966673	2966724	chr3L	2974150	2974204	mdg1	12	7479	13.5	2.0	7.8	1.4	7531	chr3L	2966673	intergenic	not near genes	chr3L	2970438	intergenic	not near genes	chr3L	2974204	intergenic	not near genes	chr3L_12_2970001	chr3L_2970001	RAL-223
1681	chr3L	3040281	3040351	chr3L	3042120	3042190	S-element	30	1838	13.0	8.5	10.8	2.5	1909	chr3L	3040281	3` UTR	CG2162 +	chr3L	3041236	intergenic	not near genes	chr3L	3042190	intergenic	Jafrac2 +	chr3L_30_3040001	chr3L_3040001	RAL-223
1683	chr3L	3051701	3051756	chr3L	3051993	3052051	pogo	16	292	9.5	8.5	9.0	1.6	350	chr3L	3051701	3` UTR	CG32485 +	chr3L	3051876	intergenic	CG32485 +	chr3L	3052051	intergenic	CG32485 +,CG1271 +	chr3L_16_3050001	chr3L_3050001	RAL-223
1684	chr3L	3061248	3061311	chr3L	3069870	3069926	Tirant	18	8622	7.0	5.0	6.0	2.6	8678	chr3L	3061248	intron	CG32486 -	chr3L	3065587	intron	CG32486 -	chr3L	3069926	intron	CG32486 -	chr3L_18_3065001	chr3L_3065001	RAL-223
1688	chr3L	3281404	3281465	chr3L	3281945	3281999	Doc	30	538	14.5	11.0	12.8	2.2	595	chr3L	3281404	intron	CG12017 +	chr3L	3281702	intron	CG12017 +	chr3L	3281999	intron	CG12017 +	chr3L_30_3280001	chr3L_3280001	RAL-223
1696	chr3L	3475027	3475055	chr3L	3475521	3475550	jockey	9	495	13.5	6.5	10.0	0.8	523	chr3L	3475027	intron	CG42324 +	chr3L	3475288	intron	CG42324 +	chr3L	3475550	intron	CG42324 +	chr3L_9_3475001	chr3L_3475001	RAL-223
1701	chr3L	3601268	3601325	chr3L	3606629	3606686	copia	22	5361	7.0	9.0	8.0	2.4	5418	chr3L	3601268	intron	Eip63E +	chr3L	3603977	intron	Eip63E +	chr3L	3606686	intron	Eip63E +	chr3L_22_3600001	chr3L_3600001	RAL-223
1714	chr3L	3833696	3833764	chr3L	3833987	3834055	pogo	27	290	9.5	7.0	8.2	2.9	359	chr3L	3833696	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834055	intron	enc +	chr3L_27_3830001	chr3L_3830001	RAL-223
1724	chr3L	4328696	4328758	chr3L	4336239	4336306	412	25	7547	1.5	11.0	6.2	3.5	7610	chr3L	4328696	intron	Cip4 -	chr3L	4332501	intron	Cip4 -	chr3L	4336306	exon	Cip4 -	chr3L_25_4330001	chr3L_4330001	RAL-223
1745	chr3L	4901089	4901147	chr3L	4907329	4907387	diver	26	6240	12.0	12.0	12.0	2.0	6298	chr3L	4901089	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907387	intergenic	not near genes	chr3L_26_4900001	chr3L_4900001	RAL-223
1750	chr3L	5034118	5034177	chr3L	5043320	5043379	roo	27	9202	12.0	10.5	11.2	2.2	9261	chr3L	5034118	intron	Con -	chr3L	5038748	intron	Con -	chr3L	5043379	intron	Con -	chr3L_27_5035001	chr3L_5035001	RAL-223
1751	chr3L	5045411	5045478	chr3L	5050242	5050309	Doc	17	4831	8.5	8.0	8.2	1.8	4898	chr3L	5045411	5` UTR	Con -	chr3L	5047860	intron	Con -	chr3L	5050309	intron	Con -	chr3L_17_5045001	chr3L_5045001	RAL-223
1770	chr3L	5537675	5537747	chr3L	5538067	5538139	jockey	23	389	5.5	7.5	6.5	3.1	464	chr3L	5537675	intergenic	not near genes	chr3L	5537907	intergenic	not near genes	chr3L	5538139	intergenic	CG10625 -	chr3L_23_5535001	chr3L_5535001	RAL-223
1777	chr3L	5909981	5910058	chr3L	5910272	5910349	pogo	10	289	5.5	0.0	2.8	2.6	368	chr3L	5909981	intron	CG13288 +	chr3L	5910165	intron	CG13288 +	chr3L	5910349	intron	CG13288 +	chr3L_10_5910001	chr3L_5910001	RAL-223
1779	chr3L	5926318	5926347	chr3L	5926504	5926589	BS	8	235	9.0	6.5	7.8	0.9	271	chr3L	5926318	intron	Vap-33B +	chr3L	5926454	intron	Vap-33B +	chr3L	5926589	intron	Vap-33B +	chr3L_8_5925001	chr3L_5925001	RAL-223
1784	chr3L	6001641	6001708	chr3L	6004391	6004458	jockey	20	2749	8.5	0.5	4.5	3.6	2817	chr3L	6001641	intron	PVRAP +	chr3L	6003050	intron	PVRAP +	chr3L	6004458	intron	PVRAP +	chr3L_20_6000001	chr3L_6000001	RAL-223
1785	chr3L	6040316	6040379	chr3L	6042722	6042785	Doc	26	2406	13.0	7.5	10.2	2.3	2469	chr3L	6040316	intergenic	Jon65Aiv +	chr3L	6041550	intergenic	not near genes	chr3L	6042785	intergenic	not near genes	chr3L_26_6040001	chr3L_6040001	RAL-223
1795	chr3L	6220876	6220940	chr3L	6230078	6230142	roo	31	9201	7.5	16.0	11.8	2.4	9266	chr3L	6220876	5` UTR	pncr008:3L +	chr3L	6225509	intergenic	not near genes	chr3L	6230142	intergenic	not near genes	chr3L_31_6225001	chr3L_6225001	RAL-223
1799	chr3L	6334964	6335037	chr3L	6335484	6335539	297	32	520	6.5	9.5	8.0	3.6	575	chr3L	6334964	intron	CG13300 -	chr3L	6335252	intron	CG13300 -	chr3L	6335539	intron	CG13300 -	chr3L_32_6335001	chr3L_6335001	RAL-223
1802	chr3L	6405619	6405680	chr3L	6432133	6432194	roo	24	26514	10.0	6.5	8.2	2.6	26575	chr3L	6405619	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432194	intron	CG42747 +	chr3L_24_6415001	chr3L_6415001	RAL-223
1805	chr3L	6620563	6620600	chr3L	6621053	6621090	Rt1c	20	490	11.5	17.5	14.5	1.3	527	chr3L	6620563	intergenic	not near genes	chr3L	6620826	intergenic	not near genes	chr3L	6621090	intergenic	not near genes	chr3L_20_6620001	chr3L_6620001	RAL-223
1810	chr3L	6781078	6781149	chr3L	6783141	6783212	Doc	24	2063	7.5	8.5	8.0	2.7	2134	chr3L	6781078	intergenic	not near genes	chr3L	6782145	intergenic	not near genes	chr3L	6783212	intergenic	not near genes	chr3L_24_6780001	chr3L_6780001	RAL-223
1812	chr3L	6855881	6855948	chr3L	6860715	6860717	Doc	30	4829	6.5	6.5	6.5	4.0	4836	chr3L	6855881	intergenic	not near genes	chr3L	6858299	intergenic	not near genes	chr3L	6860717	intergenic	not near genes	chr3L_30_6855001	chr3L_6855001	RAL-223
1815	chr3L	6887476	6887542	chr3L	6895018	6895084	roo	28	7542	7.5	7.0	7.2	3.4	7608	chr3L	6887476	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895084	intergenic	not near genes	chr3L_28_6890001	chr3L_6890001	RAL-223
1820	chr3L	6994885	6994914	chr3L	6995496	6995525	BS	7	611	6.0	5.5	5.8	1.0	640	chr3L	6994885	intergenic	bin +	chr3L	6995205	intergenic	not near genes	chr3L	6995525	intergenic	not near genes	chr3L_7_6995001	chr3L_6995001	RAL-223
1832	chr3L	7377272	7377338	chr3L	7380427	7380493	297	32	3155	7.5	13.5	10.5	2.8	3221	chr3L	7377272	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380493	intron	SMSr -	chr3L_32_7375001	chr3L_7375001	RAL-223
1839	chr3L	7498728	7498775	chr3L	7503555	7503602	F-element	13	4827	8.0	7.5	7.8	1.5	4874	chr3L	7498728	5` UTR	CG8539 -	chr3L	7501165	intergenic	not near genes	chr3L	7503602	intergenic	not near genes	chr3L_13_7500001	chr3L_7500001	RAL-223
1845	chr3L	7793669	7793733	chr3L	7800771	7800835	297	24	7102	8.0	10.5	9.2	2.4	7166	chr3L	7793669	intron	CG32369 -	chr3L	7797252	intron	CG32369 -	chr3L	7800835	intron	CG32369 -	chr3L_24_7795001	chr3L_7795001	RAL-223
1851	chr3L	7886518	7886537	chr3L	7889087	7889106	Stalker4	11	2569	0.0	15.5	7.8	1.2	2588	chr3L	7886518	intron	CG32365 +	chr3L	7887812	intron	CG32365 +	chr3L	7889106	intron	CG32365 +	chr3L_11_7885001	chr3L_7885001	RAL-223
1852	chr3L	7916785	7916851	chr3L	7926006	7926072	roo	24	9221	9.0	7.5	8.2	2.6	9287	chr3L	7916785	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926072	3` UTR	syd -	chr3L_24_7920001	chr3L_7920001	RAL-223
1854	chr3L	7985335	7985385	chr3L	7987707	7987763	NOF	26	2376	12.5	10.5	11.5	2.1	2428	chr3L	7985335	intron	nmo +	chr3L	7986549	intron	nmo +	chr3L	7987763	intron	nmo +	chr3L_26_7985001	chr3L_7985001	RAL-223
1861	chr3L	8233544	8233583	chr3L	8238856	8238895	Rt1a	14	5310	8.0	12.0	10.0	1.3	5351	chr3L	8233544	intron	CG7213 -	chr3L	8236220	intron	CG7213 -	chr3L	8238895	intron,intron	CG7213 -,Dscam4 +	chr3L_14_8235001	chr3L_8235001	RAL-223
1873	chr3L	8481761	8481804	chr3L	8490965	8491013	roo	18	9206	8.0	11.5	9.8	1.7	9252	chr3L	8481761	intron	CG43163 -	chr3L	8486387	intron	CG43163 -	chr3L	8491013	intron	CG43163 -	chr3L_18_8485001	chr3L_8485001	RAL-223
1874	chr3L	8498248	8498315	chr3L	8505762	8505832	blood	18	7516	0.5	5.0	2.8	4.7	7584	chr3L	8498248	intron	CG43163 -	chr3L	8502040	intron	CG43163 -	chr3L	8505832	intron	CG43163 -	chr3L_18_8500001	chr3L_8500001	RAL-223
1883	chr3L	8791248	8791302	chr3L	8796695	8796771	I-element	11	5467	7.5	0.0	3.8	2.3	5523	chr3L	8791248	exon	Fhos +	chr3L	8794010	intron	Fhos +	chr3L	8796771	intron	Fhos +	chr3L_11_8790001	chr3L_8790001	RAL-223
1900	chr3L	9076884	9076948	chr3L	9084494	9084558	412	24	7610	7.5	8.0	7.8	2.7	7674	chr3L	9076884	exon	Tequila +	chr3L	9080721	intron	Tequila +	chr3L	9084558	exon	Tequila +	chr3L_24_9080001	chr3L_9080001	RAL-223
1902	chr3L	9130512	9130580	chr3L	9134323	9134391	412	21	3811	7.0	4.0	5.5	3.2	3879	chr3L	9130512	intergenic	bol -	chr3L	9132452	intergenic	not near genes	chr3L	9134391	intergenic	Dhpr +	chr3L_21_9130001	chr3L_9130001	RAL-223
1903	chr3L	9164654	9164683	chr3L	9166171	9166200	hobo	10	1517	21.5	0.5	11.0	0.8	1546	chr3L	9164654	intron	Rdl -	chr3L	9165427	intron	Rdl -	chr3L	9166200	intron	Rdl -	chr3L_10_9165001	chr3L_9165001	RAL-223
1905	chr3L	9219202	9219266	chr3L	9219924	9219972	jockey	16	721	9.5	11.5	10.5	1.4	770	chr3L	9219202	intergenic	not near genes	chr3L	9219587	intergenic	not near genes	chr3L	9219972	intergenic	not near genes	chr3L_16_9215001	chr3L_9215001	RAL-223
1909	chr3L	9270578	9270639	chr3L	9278383	9278441	roo	26	7799	8.5	8.0	8.2	2.8	7863	chr3L	9270578	intron	GluRIB +	chr3L	9274510	intron	GluRIB +	chr3L	9278441	exon	GluRIB +	chr3L_26_9270001	chr3L_9270001	RAL-223
1917	chr3L	9443491	9443537	chr3L	9445332	9445342	S-element	18	1839	10.5	18.5	14.5	1.2	1851	chr3L	9443491	intron	CG33926 +	chr3L	9444416	intron	CG33926 +	chr3L	9445342	intron	CG33926 +	chr3L_18_9440001	chr3L_9440001	RAL-223
1921	chr3L	9501655	9501725	chr3L	9502191	9502261	roo	28	536	7.0	7.5	7.2	3.4	606	chr3L	9501655	intron	path -	chr3L	9501958	intron	path -	chr3L	9502261	intron	path -	chr3L_28_9500001	chr3L_9500001	RAL-223
1926	chr3L	9533717	9533774	chr3L	9541327	9541369	412	14	7602	6.0	8.5	7.2	1.7	7652	chr3L	9533717	intergenic	not near genes	chr3L	9537543	intergenic	not near genes	chr3L	9541369	intergenic	not near genes	chr3L_14_9535001	chr3L_9535001	RAL-223
1927	chr3L	9571868	9571926	chr3L	9572266	9572324	jockey	24	397	11.0	6.0	8.5	2.5	456	chr3L	9571868	intron	CG42673 +	chr3L	9572096	intron	CG42673 +	chr3L	9572324	intron	CG42673 +	chr3L_24_9570001	chr3L_9570001	RAL-223
1928	chr3L	9575863	9575938	chr3L	9580991	9581067	jockey	22	5126	9.0	6.0	7.5	2.6	5204	chr3L	9575863	intron	CG42673 +	chr3L	9578465	intron	CG42673 +	chr3L	9581067	intron	CG42673 +	chr3L_22_9575001	chr3L_9575001	RAL-223
1934	chr3L	9929640	9929691	chr3L	9938444	9938520	roo	19	8828	8.5	7.0	7.8	2.2	8880	chr3L	9929640	intron	CG34356 +	chr3L	9934080	intron	CG34356 +	chr3L	9938520	intron	CG34356 +	chr3L_19_9930001	chr3L_9930001	RAL-223
1944	chr3L	10060078	10060107	chr3L	10067707	10067736	17.6	9	7629	13.5	15.0	14.2	0.6	7658	chr3L	10060078	intron	dpr6 +	chr3L	10063907	intron	dpr6 +	chr3L	10067736	intron	dpr6 +	chr3L_9_10060001	chr3L_10060001	RAL-223
1962	chr3L	10414897	10414966	chr3L	10417317	10417388	Doc	17	2421	4.0	6.5	5.2	2.7	2491	chr3L	10414897	intergenic	CG12362 +	chr3L	10416142	intergenic	not near genes	chr3L	10417388	intergenic	not near genes	chr3L_17_10415001	chr3L_10415001	RAL-223
1991	chr3L	11087008	11087089	chr3L	11088846	11088921	S-element	22	1838	7.0	7.0	7.0	2.8	1913	chr3L	11087008	intron	JIL-1 -	chr3L	11087964	intron	JIL-1 -	chr3L	11088921	intron	JIL-1 -	chr3L_22_11085001	chr3L_11085001	RAL-223
1995	chr3L	11105247	11105321	chr3L	11107007	11107015	X-element	27	1757	5.5	6.5	6.0	3.9	1768	chr3L	11105247	intergenic	not near genes	chr3L	11106131	intergenic	not near genes	chr3L	11107015	3` UTR	CG32073 -	chr3L_27_11105001	chr3L_11105001	RAL-223
2003	chr3L	11264419	11264483	chr3L	11271421	11271485	17.6	25	7001	10.0	10.0	10.0	2.3	7066	chr3L	11264419	intergenic	not near genes	chr3L	11267952	intergenic	not near genes	chr3L	11271485	intergenic	not near genes	chr3L_25_11265001	chr3L_11265001	RAL-223
2006	chr3L	11329639	11329713	chr3L	11332894	11332953	jockey	30	3252	10.0	6.0	8.0	3.3	3314	chr3L	11329639	intergenic	not near genes	chr3L	11331296	intergenic	not near genes	chr3L	11332953	intergenic	not near genes	chr3L_30_11330001	chr3L_11330001	RAL-223
2024	chr3L	11723039	11723104	chr3L	11727884	11727949	Doc	20	4845	9.0	9.0	9.0	2.0	4910	chr3L	11723039	3` UTR	Bmcp +	chr3L	11725494	intron	Bmcp +	chr3L	11727949	3` UTR	Bmcp +	chr3L_20_11725001	chr3L_11725001	RAL-223
2032	chr3L	11864505	11864574	chr3L	11865850	11865919	pogo	28	1344	10.0	10.0	10.0	2.5	1414	chr3L	11864505	intron	CG44837 -	chr3L	11865212	intron	CG44837 -	chr3L	11865919	intron	CG44837 -	chr3L_28_11865001	chr3L_11865001	RAL-223
2078	chr3L	12874889	12874949	chr3L	12877231	12877291	jockey	22	2342	7.5	10.5	9.0	2.2	2402	chr3L	12874889	intergenic	not near genes	chr3L	12876090	intergenic	not near genes	chr3L	12877291	intergenic	not near genes	chr3L_22_12875001	chr3L_12875001	RAL-223
2081	chr3L	12919234	12919255	chr3L	12924757	12924778	Rt1c	6	5522	23.5	7.5	15.5	0.4	5544	chr3L	12919234	intergenic	not near genes	chr3L	12922006	intergenic	not near genes	chr3L	12924778	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-223
2082	chr3L	12919256	12919305	chr3L	12924750	12924832	Rt1c	5	5505	10.0	7.5	8.8	0.5	5576	chr3L	12919256	intergenic	not near genes	chr3L	12922044	intergenic	not near genes	chr3L	12924832	intergenic	not near genes	chr3L_5_12920001	chr3L_12920001	RAL-223
2084	chr3L	12957742	12957818	chr3L	12962274	12962283	copia	32	4529	9.5	9.0	9.2	3.1	4541	chr3L	12957742	intergenic	not near genes	chr3L	12960012	intergenic	not near genes	chr3L	12962283	intergenic	not near genes	chr3L_32_12960001	chr3L_12960001	RAL-223
2104	chr3L	13525113	13525181	chr3L	13532959	13533027	roo	28	7845	11.5	5.5	8.5	2.9	7914	chr3L	13525113	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13533027	intergenic	not near genes	chr3L_28_13525001	chr3L_13525001	RAL-223
2105	chr3L	13574578	13574620	chr3L	13580138	13580181	Rt1c	7	5560	7.0	9.5	8.2	0.8	5603	chr3L	13574578	intron	bru-3 -	chr3L	13577380	intron	bru-3 -	chr3L	13580181	intron	bru-3 -	chr3L_7_13575001	chr3L_13575001	RAL-223
2114	chr3L	13804504	13804565	chr3L	13822840	13822901	roo	18	18336	4.0	7.0	5.5	2.8	18397	chr3L	13804504	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822901	intergenic	not near genes	chr3L_18_13810001	chr3L_13810001	RAL-223
2132	chr3L	14245530	14245594	chr3L	14245674	14245738	1360	22	143	8.5	11.0	9.8	2.0	208	chr3L	14245530	3` UTR	CR44561 -	chr3L	14245634	3` UTR	CR44561 -	chr3L	14245738	intergenic	CR44561 -,CR44560 +	chr3L_22_14245001	chr3L_14245001	RAL-223
2133	chr3L	14267360	14267406	chr3L	14271822	14271868	F-element	15	4462	7.5	0.0	3.8	3.1	4508	chr3L	14267360	intergenic	not near genes	chr3L	14269614	intergenic	not near genes	chr3L	14271868	intergenic	not near genes	chr3L_15_14265001	chr3L_14265001	RAL-223
2135	chr3L	14295933	14296003	chr3L	14296469	14296539	roo	23	534	5.5	8.0	6.8	2.9	606	chr3L	14295933	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296539	intron	fz +	chr3L_23_14295001	chr3L_14295001	RAL-223
2136	chr3L	14312015	14312042	chr3L	14316842	14316906	X-element	9	4854	5.5	7.0	6.2	1.2	4891	chr3L	14312015	exon	fz +	chr3L	14314460	intron	fz +	chr3L	14316906	intron	fz +	chr3L_9_14310001	chr3L_14310001	RAL-223
2146	chr3L	14468406	14468455	chr3L	14473662	14473711	copia	16	5256	7.0	4.0	5.5	2.5	5305	chr3L	14468406	intron	bbg -	chr3L	14471058	intron	bbg -	chr3L	14473711	intron	bbg -	chr3L_16_14470001	chr3L_14470001	RAL-223
2157	chr3L	14721139	14721209	chr3L	14723032	14723044	Rt1c	16	1886	6.5	6.5	6.5	2.1	1905	chr3L	14721139	intron	ome +	chr3L	14722092	intron	ome +	chr3L	14723044	intron	ome +	chr3L_16_14720001	chr3L_14720001	RAL-223
2158	chr3L	14725552	14725631	chr3L	14728605	14728683	Doc	15	3053	1.5	5.0	3.2	3.6	3131	chr3L	14725552	intron	ome +	chr3L	14727118	intron	ome +	chr3L	14728683	intron	ome +	chr3L_15_14725001	chr3L_14725001	RAL-223
2159	chr3L	14825115	14825152	chr3L	14832892	14832919	Stalker2	17	7776	2.5	17.5	10.0	1.5	7804	chr3L	14825115	intron	CG17839 +	chr3L	14829017	intron	CG17839 +	chr3L	14832919	intron	CG17839 +	chr3L_17_14825001	chr3L_14825001	RAL-223
2168	chr3L	14970720	14970765	chr3L	14971080	14971125	F-element	11	360	6.5	8.0	7.2	1.3	405	chr3L	14970720	intergenic	Tom +	chr3L	14970922	intergenic	not near genes	chr3L	14971125	intergenic	not near genes	chr3L_11_14970001	chr3L_14970001	RAL-223
2170	chr3L	15085003	15085074	chr3L	15086219	15086290	1360	24	1216	7.0	7.5	7.2	2.9	1287	chr3L	15085003	intron	cp309 -	chr3L	15085646	intron	cp309 -	chr3L	15086290	intron	cp309 -	chr3L_24_15085001	chr3L_15085001	RAL-223
2181	chr3L	15295727	15295791	chr3L	15298620	15298684	gypsy5	32	2893	9.0	8.5	8.8	3.3	2957	chr3L	15295727	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298684	intergenic	Best4 +	chr3L_32_15295001	chr3L_15295001	RAL-223
2183	chr3L	15423718	15423782	chr3L	15426612	15426676	opus	21	2893	7.5	6.0	6.8	2.7	2958	chr3L	15423718	intergenic	not near genes	chr3L	15425197	intergenic	not near genes	chr3L	15426676	intergenic	not near genes	chr3L_21_15425001	chr3L_15425001	RAL-223
2205	chr3L	15899204	15899240	chr3L	15899801	15899857	jockey	12	613	8.5	6.5	7.5	1.4	653	chr3L	15899204	intergenic	pHCl -	chr3L	15899530	intergenic	not near genes	chr3L	15899857	intergenic	sff -	chr3L_12_15895001	chr3L_15895001	RAL-223
2206	chr3L	15929155	15929220	chr3L	15938348	15938417	roo	8	9194	0.0	11.0	5.5	1.2	9262	chr3L	15929155	intron	Pka-C3 -	chr3L	15933786	intron	Pka-C3 -	chr3L	15938417	intron	Pka-C3 -	chr3L_8_15930001	chr3L_15930001	RAL-223
2210	chr3L	16184070	16184133	chr3L	16188939	16189002	X-element	29	4869	6.5	11.0	8.8	3.0	4932	chr3L	16184070	intergenic	not near genes	chr3L	16186536	intergenic	not near genes	chr3L	16189002	intergenic	not near genes	chr3L_29_16185001	chr3L_16185001	RAL-223
2216	chr3L	16493937	16493999	chr3L	16494504	16494565	jockey	28	566	10.5	17.0	13.8	1.9	628	chr3L	16493937	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494251	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494565	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_28_16490001	chr3L_16490001	RAL-223
2225	chr3L	16616464	16616534	chr3L	16621842	16621912	297	43	5378	10.0	15.0	12.5	3.2	5448	chr3L	16616464	3` UTR	Abl -	chr3L	16619188	3` UTR	Abl -	chr3L	16621912	3` UTR	Abl -	chr3L_43_16615001	chr3L_16615001	RAL-223
2230	chr3L	16683981	16684036	chr3L	16689252	16689307	copia	13	5270	5.5	11.5	8.5	1.4	5326	chr3L	16683981	intron,intron	Lasp -,CG43954 -	chr3L	16686644	intron,intron	Lasp -,CG43954 -	chr3L	16689307	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_13_16685001	chr3L_16685001	RAL-223
2240	chr3L	16945683	16945752	chr3L	16954886	16954955	roo	30	9201	8.0	9.0	8.5	3.2	9272	chr3L	16945683	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954955	5` UTR	Nc73EF +	chr3L_30_16950001	chr3L_16950001	RAL-223
2243	chr3L	17034887	17034961	chr3L	17035120	17035199	G2	22	237	4.5	6.0	5.2	3.5	312	chr3L	17034887	intergenic	not near genes	chr3L	17035043	intergenic	not near genes	chr3L	17035199	intergenic	beg +	chr3L_22_17035001	chr3L_17035001	RAL-223
2244	chr3L	17084962	17085020	chr3L	17094161	17094219	roo	25	9199	9.0	11.0	10.0	2.3	9257	chr3L	17084962	intron	Rbp6 -	chr3L	17089590	intron	Rbp6 -	chr3L	17094219	intron	Rbp6 -	chr3L_25_17085001	chr3L_17085001	RAL-223
2257	chr3L	17516946	17517004	chr3L	17524549	17524612	412	33	7607	9.0	9.5	9.2	3.2	7666	chr3L	17516946	intron	CG7564 +	chr3L	17520779	intron	CG7564 +	chr3L	17524612	3` UTR	CG7564 +	chr3L_33_17520001	chr3L_17520001	RAL-223
2260	chr3L	17730807	17730871	chr3L	17738187	17738251	mdg1	19	7379	7.0	10.0	8.5	2.0	7444	chr3L	17730807	intron	Ccn +	chr3L	17734529	intron	Ccn +	chr3L	17738251	intron	Ccn +	chr3L_19_17730001	chr3L_17730001	RAL-223
2264	chr3L	17799767	17799836	chr3L	17801604	17801673	S-element	22	1837	4.0	8.0	6.0	3.1	1906	chr3L	17799767	intron	NUCB1 -	chr3L	17800720	intron	NUCB1 -	chr3L	17801673	intron	NUCB1 -	chr3L_22_17800001	chr3L_17800001	RAL-223
2268	chr3L	17918338	17918395	chr3L	17921191	17921248	opus	11	2853	5.0	6.5	5.8	1.6	2910	chr3L	17918338	intergenic	not near genes	chr3L	17919793	intergenic	not near genes	chr3L	17921248	intergenic	not near genes	chr3L_11_17915001	chr3L_17915001	RAL-223
2272	chr3L	18047656	18047736	chr3L	18056763	18056843	roo	17	9107	2.5	6.5	4.5	3.1	9187	chr3L	18047656	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056843	intron	Eip75B -	chr3L_17_18050001	chr3L_18050001	RAL-223
2299	chr3L	18506095	18506154	chr3L	18509608	18509667	F-element	27	3513	7.5	12.5	10.0	2.5	3572	chr3L	18506095	intergenic	not near genes	chr3L	18507881	intergenic	not near genes	chr3L	18509667	intergenic	not near genes	chr3L_27_18505001	chr3L_18505001	RAL-223
2300	chr3L	18528583	18528652	chr3L	18537794	18537863	roo	29	9211	11.0	5.5	8.2	3.2	9280	chr3L	18528583	intergenic	not near genes	chr3L	18533223	intergenic	not near genes	chr3L	18537863	intergenic	not near genes	chr3L_29_18530001	chr3L_18530001	RAL-223
2305	chr3L	18593904	18593981	chr3L	18595934	18596014	Doc	20	2031	3.5	4.5	4.0	4.0	2110	chr3L	18593904	intergenic	term -	chr3L	18594959	intergenic	not near genes	chr3L	18596014	intergenic	CR45389 +	chr3L_20_18590001	chr3L_18590001	RAL-223
2313	chr3L	18710742	18710789	chr3L	18718742	18718789	Stalker2	10	8000	7.5	2.0	4.8	1.7	8047	chr3L	18710742	intergenic	not near genes	chr3L	18714766	intergenic	not near genes	chr3L	18718789	intergenic	not near genes	chr3L_10_18710001	chr3L_18710001	RAL-223
2318	chr3L	18772366	18772432	chr3L	18781097	18781163	roo	22	8731	5.5	9.0	7.2	2.7	8797	chr3L	18772366	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781163	intron	ftz-f1 -	chr3L_22_18775001	chr3L_18775001	RAL-223
2333	chr3L	18994339	18994341	chr3L	23730762	23730764	G2	4	4736423	18.5	45.0	31.8	0.1	4736425	chr3L	18994339	intron	CG18135 -	chr3L	21362552	intergenic	not near genes	chr3L	23730764	intergenic	not near genes	chr3L_4_21360001	chr3L_21360001	RAL-223
2334	chr3L	19008795	19008860	chr3L	19009186	19009248	jockey	17	379	8.5	9.0	8.8	1.7	453	chr3L	19008795	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009248	intron	nkd -	chr3L_17_19005001	chr3L_19005001	RAL-223
2339	chr3L	19117006	19117020	chr3L	19124503	19124517	mdg1	12	7497	19.5	7.5	13.5	0.8	7511	chr3L	19117006	intron	CG14082 -	chr3L	19120762	intron	CG14082 -	chr3L	19124517	intron	CG14082 -	chr3L_12_19120001	chr3L_19120001	RAL-223
2340	chr3L	19117023	19117074	chr3L	19124502	19124571	mdg1	19	7495	9.0	7.5	8.2	2.1	7548	chr3L	19117023	intron	CG14082 -	chr3L	19120797	intron	CG14082 -	chr3L	19124571	intron	CG14082 -	chr3L_19_19120001	chr3L_19120001	RAL-223
2345	chr3L	19208012	19208086	chr3L	19209436	19209510	Doc	22	1424	4.0	6.0	5.0	3.7	1498	chr3L	19208012	intron	fz2 -	chr3L	19208761	intron	fz2 -	chr3L	19209510	intron	fz2 -	chr3L_22_19205001	chr3L_19205001	RAL-223
2358	chr3L	19398892	19398929	chr3L	19403657	19403696	F-element	13	4765	7.0	9.0	8.0	1.4	4804	chr3L	19398892	intron	CG32206 -	chr3L	19401294	intron	CG32206 -	chr3L	19403696	intron	CG32206 -	chr3L_13_19400001	chr3L_19400001	RAL-223
2367	chr3L	19820248	19820319	chr3L	19827847	19827918	412	40	7599	6.5	5.5	6.0	5.7	7670	chr3L	19820248	intron	Deaf1 +	chr3L	19824083	intron	Deaf1 +	chr3L	19827918	intron	Deaf1 +	chr3L_40_19820001	chr3L_19820001	RAL-223
2368	chr3L	19848466	19848521	chr3L	19857706	19857761	roo	33	9239	11.5	11.5	11.5	2.6	9295	chr3L	19848466	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857761	intron	Papss +	chr3L_33_19850001	chr3L_19850001	RAL-223
2369	chr3L	19861780	19861829	chr3L	19863618	19863667	S-element	15	1838	14.5	9.0	11.8	1.2	1887	chr3L	19861780	5` UTR	CR45433 +	chr3L	19862724	intergenic	not near genes	chr3L	19863667	intergenic	not near genes	chr3L_15_19860001	chr3L_19860001	RAL-223
2376	chr3L	20113612	20113683	chr3L	20122919	20122990	roo	21	9307	11.0	7.5	9.2	2.1	9378	chr3L	20113612	intergenic	not near genes	chr3L	20118301	intergenic	not near genes	chr3L	20122990	intergenic	not near genes	chr3L_21_20115001	chr3L_20115001	RAL-223
2380	chr3L	20212562	20212586	chr3L	20218189	20218213	mdg3	10	5627	16.0	9.0	12.5	0.7	5651	chr3L	20212562	intergenic	CG7017 -	chr3L	20215388	intergenic	not near genes	chr3L	20218213	intergenic	CG6933 -	chr3L_10_20215001	chr3L_20215001	RAL-223
2382	chr3L	20257287	20257353	chr3L	20258457	20258518	pogo	29	1170	10.0	4.5	7.2	3.5	1231	chr3L	20257287	intron	rdgC +	chr3L	20257902	intron	rdgC +	chr3L	20258518	intron	rdgC +	chr3L_29_20255001	chr3L_20255001	RAL-223
2384	chr3L	20321112	20321120	chr3L	20342868	20342876	17.6	6	21757	13.5	60.0	36.8	0.2	21764	chr3L	20321112	exon	Spn77Bb +	chr3L	20331994	intergenic	not near genes	chr3L	20342876	exon	Spn77Bc +	chr3L_6_20330001	chr3L_20330001	RAL-223
2388	chr3L	20476724	20476779	chr3L	20484373	20484428	springer	25	7649	9.0	19.0	14.0	1.7	7704	chr3L	20476724	3` UTR	isoQC +	chr3L	20480576	intergenic	not near genes	chr3L	20484428	3` UTR	ZnT77C -	chr3L_25_20480001	chr3L_20480001	RAL-223
2391	chr3L	20590022	20590056	chr3L	20590606	20590645	412	17	588	13.0	6.0	9.5	1.6	623	chr3L	20590022	intergenic	not near genes	chr3L	20590334	intergenic	not near genes	chr3L	20590645	intergenic	not near genes	chr3L_17_20590001	chr3L_20590001	RAL-223
2392	chr3L	20590058	20590090	chr3L	20590601	20590679	412	9	582	8.0	5.5	6.8	1.2	621	chr3L	20590058	intergenic	not near genes	chr3L	20590368	intergenic	not near genes	chr3L	20590679	intergenic	not near genes	chr3L_9_20590001	chr3L_20590001	RAL-223
2400	chr3L	21014894	21014942	chr3L	21023399	21023462	Tirant	19	8523	6.5	8.5	7.5	2.2	8568	chr3L	21014894	intron	skd -	chr3L	21019178	intron	skd -	chr3L	21023462	intron	skd -	chr3L_19_21015001	chr3L_21015001	RAL-223
2403	chr3L	21151826	21151880	chr3L	21156960	21157014	flea	18	5134	15.5	10.0	12.8	1.3	5188	chr3L	21151826	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21157014	intron	Ac78C -	chr3L_18_21150001	chr3L_21150001	RAL-223
2406	chr3L	21243736	21243764	chr3L	21251311	21251326	412	5	7573	5.5	11.5	8.5	0.5	7590	chr3L	21243736	intron	Eip78C +	chr3L	21247531	intron	Eip78C +	chr3L	21251326	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	RAL-223
2408	chr3L	21306106	21306171	chr3L	21315315	21315380	roo	18	9208	6.5	7.0	6.8	2.3	9274	chr3L	21306106	3` UTR	CG7632 +	chr3L	21310743	intron	Pc -	chr3L	21315380	3` UTR	Pc -	chr3L_18_21310001	chr3L_21310001	RAL-223
2412	chr3L	21498826	21498861	chr3L	21500512	21500547	1360	13	1685	5.5	19.5	12.5	1.0	1721	chr3L	21498826	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499686	intron	Glg1 -	chr3L	21500547	intron	Glg1 -	chr3L_13_21495001	chr3L_21495001	RAL-223
2415	chr3L	21749276	21749333	chr3L	21754481	21754543	Doc	19	5208	8.5	8.0	8.2	2.1	5267	chr3L	21749276	intron	Syn1 -	chr3L	21751910	intron	Syn1 -	chr3L	21754543	intron	Syn1 -	chr3L_19_21750001	chr3L_21750001	RAL-223
2429	chr3L	22099632	22099694	chr3L	22105868	22105930	3S18	21	6236	8.5	10.0	9.2	2.1	6298	chr3L	22099632	intergenic	not near genes	chr3L	22102781	intergenic	not near genes	chr3L	22105930	intergenic	not near genes	chr3L_21_22100001	chr3L_22100001	RAL-223
2444	chr3L	22555723	22555792	chr3L	22563243	22563312	blood	32	7519	6.5	5.0	5.8	4.7	7589	chr3L	22555723	intergenic	not near genes	chr3L	22559518	intergenic	not near genes	chr3L	22563312	intergenic	not near genes	chr3L_32_22555001	chr3L_22555001	RAL-223
2445	chr3L	22577584	22577630	chr3L	22582422	22582468	Doc	14	4837	7.5	11.5	9.5	1.3	4884	chr3L	22577584	intergenic	not near genes	chr3L	22580026	intergenic	not near genes	chr3L	22582468	3` UTR	CG14459 -	chr3L_14_22580001	chr3L_22580001	RAL-223
2446	chr3L	22577632	22577645	chr3L	22582408	22582458	Doc	6	4819	5.5	8.5	7.0	0.8	4826	chr3L	22577632	intergenic	not near genes	chr3L	22580045	intergenic	not near genes	chr3L	22582458	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-223
2447	chr3L	22617144	22617218	chr3L	22624646	22624720	blood	39	7502	8.0	5.5	6.8	5.0	7576	chr3L	22617144	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624720	intron	CG14459 -	chr3L_39_22620001	chr3L_22620001	RAL-223
2451	chr3L	22761345	22761403	chr3L	22766824	22766887	Ivk	22	5484	11.0	11.0	11.0	1.8	5542	chr3L	22761345	intron	SPoCk +	chr3L	22764116	intron	SPoCk +	chr3L	22766887	intron	SPoCk +	chr3L_22_22760001	chr3L_22760001	RAL-223
2455	chr3L	22865944	22866009	chr3L	22867127	22867192	Doc	34	1182	9.5	11.0	10.2	3.0	1248	chr3L	22865944	exon	CG33170 +	chr3L	22866568	intron	CG33170 +	chr3L	22867192	intron	CG33170 +	chr3L_34_22865001	chr3L_22865001	RAL-223
2469	chr3L	22989822	22989887	chr3L	22996846	22996905	297	24	7024	11.0	8.5	9.8	2.2	7083	chr3L	22989822	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996905	intergenic	not near genes	chr3L_24_22990001	chr3L_22990001	RAL-223
2470	chr3L	23042176	23042249	chr3L	23048979	23049052	gypsy6	27	6802	9.5	9.5	9.5	2.6	6876	chr3L	23042176	intergenic	not near genes	chr3L	23045614	intergenic	not near genes	chr3L	23049052	intergenic	not near genes	chr3L_27_23045001	chr3L_23045001	RAL-223
2472	chr3L	23165871	23165904	chr3L	23173367	23173400	Quasimodo	10	7494	15.5	10.5	13.0	0.7	7529	chr3L	23165871	intergenic	not near genes	chr3L	23169636	intergenic	not near genes	chr3L	23173400	intergenic	not near genes	chr3L_10_23165001	chr3L_23165001	RAL-223
2475	chr3L	23288225	23288254	chr3L	23288954	23288983	INE-1	12	729	18.5	12.0	15.2	0.7	758	chr3L	23288225	intergenic	not near genes	chr3L	23288604	intergenic	not near genes	chr3L	23288983	intergenic	not near genes	chr3L_12_23285001	chr3L_23285001	RAL-223
2476	chr3L	23288259	23288298	chr3L	23288988	23289027	INE-1	18	728	7.0	25.5	16.2	1.0	768	chr3L	23288259	intergenic	not near genes	chr3L	23288643	intergenic	not near genes	chr3L	23289027	intergenic	not near genes	chr3L_18_23285001	chr3L_23285001	RAL-223
2478	chr3L	23459760	23459762	chr3L	26026743	26026751	Cr1a	4	2566986	19.0	25.5	22.2	0.2	2566991	chr3L	23459760	intergenic	not near genes	chr3L	24743256	intron	scro +	chr3L	26026751	intergenic	not near genes	chr3L_4_24740001	chr3L_24740001	RAL-223
2483	chr3L	24012378	24012429	chr3L	24020769	24020820	roo	16	8391	8.0	9.5	8.8	1.6	8442	chr3L	24012378	intergenic	not near genes	chr3L	24016599	intergenic	not near genes	chr3L	24020820	intergenic	not near genes	chr3L_16_24015001	chr3L_24015001	RAL-223
2484	chr3L	24168759	24168806	chr3L	24176121	24176184	ZAM	12	7369	10.0	6.0	8.0	1.3	7425	chr3L	24168759	intron	Snap25 +	chr3L	24172472	intron	Snap25 +	chr3L	24176184	intron	Snap25 +	chr3L_12_24170001	chr3L_24170001	RAL-223
2486	chr3L	24791854	24791886	chr3L	24796683	24796715	Doc	7	4829	9.0	3.5	6.2	1.0	4861	chr3L	24791854	intergenic	not near genes	chr3L	24794284	intergenic	not near genes	chr3L	24796715	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	RAL-223
2490	chr3L	25190037	25190094	chr3L	25191237	25191294	1360	4	1200	30.5	35.0	32.8	0.1	1257	chr3L	25190037	intergenic	not near genes	chr3L	25190666	intergenic	not near genes	chr3L	25191294	intergenic	not near genes	chr3L_4_25190001	chr3L_25190001	RAL-223
2495	chr3L	23611203	23611210	chr3L	27363457	27363464	Gypsy12A_LTR	4	3752254	21.5	36.5	29.0	0.1	3752261	chr3L	23611203	intron	AGO3 +	chr3L	25487334	intron	CG41343 -	chr3L	27363464	intron	Dbp80 +	chr3L_4_25485001	chr3L_25485001	RAL-223
2498	chr3R	1867057	1867063	chr3R	1954889	1954890	Doc3-element	4	87831	22.0	3.5	12.8	0.3	87833	chr3R	1867057	intron	CG42623 +	chr3R	1910974	intron	CG42623 +	chr3R	1954890	intergenic	not near genes	chr3R_4_1910001	chr3R_1910001	RAL-223
2500	chr3R	2446807	2446823	chr3R	2449006	2449022	1360	7	2200	91.0	81.0	86.0	0.1	2215	chr3R	2446807	intergenic	not near genes	chr3R	2447914	intergenic	not near genes	chr3R	2449022	intergenic	not near genes	chr3R_7_2445001	chr3R_2445001	RAL-223
2501	chr3R	2446803	2446851	chr3R	2449024	2449050	1360	5	2203	86.5	77.0	81.8	0.1	2247	chr3R	2446803	intergenic	not near genes	chr3R	2447926	intergenic	not near genes	chr3R	2449050	intergenic	not near genes	chr3R_5_2445001	chr3R_2445001	RAL-223
2505	chr3R	4104997	4105055	chr3R	4110251	4110309	copia	11	5254	6.0	8.5	7.2	1.3	5312	chr3R	4104997	intergenic	not near genes	chr3R	4107653	intergenic	not near genes	chr3R	4110309	intergenic	not near genes	chr3R_11_4105001	chr3R_4105001	RAL-223
2508	chr3R	4206026	4206041	chr3R	4211651	4211666	mdg3	8	5625	21.0	6.5	13.8	0.5	5640	chr3R	4206026	intron	CG14636 -	chr3R	4208846	intron	CG14636 -	chr3R	4211666	intron	CG14636 -	chr3R_8_4205001	chr3R_4205001	RAL-223
2509	chr3R	4206056	4206094	chr3R	4211681	4211718	mdg3	12	5625	10.0	10.5	10.2	1.1	5662	chr3R	4206056	intron	CG14636 -	chr3R	4208887	intron	CG14636 -	chr3R	4211718	intron	CG14636 -	chr3R_12_4205001	chr3R_4205001	RAL-223
2510	chr3R	4366717	4366780	chr3R	4375150	4375213	roo	25	8433	11.5	7.5	9.5	2.4	8496	chr3R	4366717	3` UTR	CG1090 +	chr3R	4370965	intergenic	not near genes	chr3R	4375213	5` UTR	CR44922 +	chr3R_25_4370001	chr3R_4370001	RAL-223
2511	chr3R	4408371	4408434	chr3R	4412725	4412774	Juan	18	4353	10.5	11.0	10.8	1.5	4403	chr3R	4408371	intron	CG32944 -	chr3R	4410572	intron	CG32944 -	chr3R	4412774	intron	CG32944 -	chr3R_18_4410001	chr3R_4410001	RAL-223
2512	chr3R	4609509	4609571	chr3R	4610723	4610785	1360	24	1214	14.5	10.5	12.5	1.8	1276	chr3R	4609509	intergenic	not near genes	chr3R	4610147	intergenic	not near genes	chr3R	4610785	intergenic	not near genes	chr3R_24_4610001	chr3R_4610001	RAL-223
2514	chr3R	4683133	4683208	chr3R	4684942	4685017	S-element	28	1806	7.5	5.5	6.5	3.7	1884	chr3R	4683133	intron	CG43427 +	chr3R	4684075	intron	CG43427 +	chr3R	4685017	intron	CG43427 +	chr3R_28_4680001	chr3R_4680001	RAL-223
2515	chr3R	4753203	4753229	chr3R	4757556	4757582	F-element	10	4353	20.0	8.0	14.0	0.7	4379	chr3R	4753203	intron,intron	atms +,CG44098 -	chr3R	4755392	intron,intron	atms +,CG44098 -	chr3R	4757582	intron,exon	atms +,CG44098 -	chr3R_10_4755001	chr3R_4755001	RAL-223
2516	chr3R	4753231	4753260	chr3R	4757554	4757602	F-element	15	4350	13.0	7.5	10.2	1.3	4371	chr3R	4753231	intron,intron	atms +,CG44098 -	chr3R	4755416	intron,intron	atms +,CG44098 -	chr3R	4757602	intron,exon	atms +,CG44098 -	chr3R_15_4755001	chr3R_4755001	RAL-223
2520	chr3R	4887445	4887503	chr3R	4894872	4894919	rover	16	7426	6.5	14.0	10.2	1.4	7474	chr3R	4887445	intergenic	not near genes	chr3R	4891182	intergenic	not near genes	chr3R	4894919	intergenic	not near genes	chr3R_16_4890001	chr3R_4890001	RAL-223
2525	chr3R	5045802	5045871	chr3R	5052954	5053023	HMS-Beagle	22	7152	9.5	5.0	7.2	2.7	7221	chr3R	5045802	3` UTR	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5053023	intergenic	CR45588 -	chr3R_22_5045001	chr3R_5045001	RAL-223
2526	chr3R	5067939	5067954	chr3R	5073506	5073521	mdg3	5	5567	25.0	10.0	17.5	0.3	5582	chr3R	5067939	intergenic	not near genes	chr3R	5070730	intergenic	not near genes	chr3R	5073521	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	RAL-223
2527	chr3R	5067956	5068006	chr3R	5073497	5073573	mdg3	16	5562	13.0	8.5	10.8	1.4	5617	chr3R	5067956	intergenic	not near genes	chr3R	5070764	intergenic	not near genes	chr3R	5073573	intergenic	not near genes	chr3R_16_5070001	chr3R_5070001	RAL-223
2532	chr3R	5338353	5338419	chr3R	5343580	5343605	Rt1c	22	5225	8.5	8.0	8.2	2.4	5252	chr3R	5338353	intron	mtd -	chr3R	5340979	intron	mtd -	chr3R	5343605	intron	mtd -	chr3R_22_5340001	chr3R_5340001	RAL-223
2533	chr3R	5365291	5365345	chr3R	5367009	5367063	NOF	29	1718	17.0	11.0	14.0	1.9	1772	chr3R	5365291	intron	Cerk -	chr3R	5366177	intron	Cerk -	chr3R	5367063	intron	Cerk -	chr3R_29_5365001	chr3R_5365001	RAL-223
2538	chr3R	5445919	5445987	chr3R	5452429	5452497	Burdock	37	6510	7.5	8.5	8.0	4.1	6578	chr3R	5445919	intron	CG14669 +	chr3R	5449208	intron	CG14669 +	chr3R	5452497	intron	CG14669 +	chr3R_37_5445001	chr3R_5445001	RAL-223
2540	chr3R	5745970	5746035	chr3R	5746261	5746326	pogo	27	290	11.5	9.0	10.2	2.4	356	chr3R	5745970	3` UTR	Madm +	chr3R	5746148	3` UTR	Madm +	chr3R	5746326	3` UTR	Madm +	chr3R_27_5745001	chr3R_5745001	RAL-223
2541	chr3R	5746975	5747035	chr3R	5753216	5753276	diver	24	6241	10.0	7.5	8.8	2.4	6301	chr3R	5746975	intergenic	Madm +	chr3R	5750126	intergenic	not near genes	chr3R	5753276	intergenic	CG2091 -	chr3R_24_5750001	chr3R_5750001	RAL-223
2543	chr3R	5809067	5809137	chr3R	5809358	5809428	pogo	29	291	6.0	9.5	7.8	3.3	361	chr3R	5809067	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809428	3` UTR	CG11000 +	chr3R_29_5805001	chr3R_5805001	RAL-223
2544	chr3R	5822343	5822405	chr3R	5823560	5823622	1360	25	1217	7.0	11.5	9.2	2.5	1279	chr3R	5822343	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823622	3` UTR	CG2023 -	chr3R_25_5820001	chr3R_5820001	RAL-223
2547	chr3R	5927525	5927581	chr3R	5927813	5927851	pogo	35	286	11.0	12.5	11.8	2.7	326	chr3R	5927525	intron	CG34113 -	chr3R	5927688	intron	CG34113 -	chr3R	5927851	intron	CG34113 -	chr3R_35_5925001	chr3R_5925001	RAL-223
2552	chr3R	6015926	6015984	chr3R	6024450	6024515	Tirant	17	8525	7.5	8.0	7.8	1.9	8589	chr3R	6015926	intergenic	not near genes	chr3R	6020220	intergenic	not near genes	chr3R	6024515	intergenic	not near genes	chr3R_17_6020001	chr3R_6020001	RAL-223
2556	chr3R	6158463	6158536	chr3R	6167096	6167169	Tirant	30	8629	12.5	10.0	11.2	2.5	8706	chr3R	6158463	intergenic	not near genes	chr3R	6162816	intergenic	not near genes	chr3R	6167169	intergenic	CG1077 +	chr3R_30_6160001	chr3R_6160001	RAL-223
2558	chr3R	6175129	6175200	chr3R	6182451	6182457	HMS-Beagle2	29	7318	9.0	9.0	9.0	2.9	7328	chr3R	6175129	intergenic	Osi1 +	chr3R	6178793	intron	CR45194 +	chr3R	6182457	intergenic	CR45194 +	chr3R_29_6175001	chr3R_6175001	RAL-223
2563	chr3R	6509995	6510049	chr3R	6515116	6515180	jockey	18	5130	11.0	9.5	10.2	1.6	5185	chr3R	6509995	intergenic	not near genes	chr3R	6512588	intergenic	not near genes	chr3R	6515180	intergenic	not near genes	chr3R_18_6510001	chr3R_6510001	RAL-223
2568	chr3R	6737453	6737466	chr3R	6739290	6739303	Doc	7	1837	13.5	9.5	11.5	0.6	1850	chr3R	6737453	intron	pb -	chr3R	6738378	intron	pb -	chr3R	6739303	intron	pb -	chr3R_7_6735001	chr3R_6735001	RAL-223
2569	chr3R	6737476	6737524	chr3R	6739288	6739361	Doc	21	1833	8.0	9.5	8.8	2.1	1885	chr3R	6737476	intron	pb -	chr3R	6738418	intron	pb -	chr3R	6739361	intron	pb -	chr3R_21_6735001	chr3R_6735001	RAL-223
2597	chr3R	7694536	7694607	chr3R	7713647	7713718	invader3	27	19111	5.5	8.0	6.8	3.5	19182	chr3R	7694536	3` UTR	Nlg1 +	chr3R	7704127	intergenic	not near genes	chr3R	7713718	intergenic	not near genes	chr3R_27_7700001	chr3R_7700001	RAL-223
2598	chr3R	7729424	7729488	chr3R	7737412	7737476	Stalker2	30	7988	5.5	10.5	8.0	3.3	8052	chr3R	7729424	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737476	intergenic	not near genes	chr3R_30_7730001	chr3R_7730001	RAL-223
2601	chr3R	7973284	7973333	chr3R	7974396	7974445	1360	19	1112	8.5	12.5	10.5	1.7	1161	chr3R	7973284	intergenic	not near genes	chr3R	7973864	intergenic	not near genes	chr3R	7974445	3` UTR	CD98hc -	chr3R_19_7970001	chr3R_7970001	RAL-223
2607	chr3R	8090515	8090564	chr3R	8094042	8094066	297	23	3523	6.5	12.0	9.2	2.3	3551	chr3R	8090515	intergenic	CR44330 +	chr3R	8092290	intergenic	not near genes	chr3R	8094066	intergenic	CG7900 +	chr3R_23_8090001	chr3R_8090001	RAL-223
2608	chr3R	8094367	8094432	chr3R	8099722	8099787	Transpac	27	5355	8.0	11.5	9.8	2.5	5420	chr3R	8094367	intron	CG7900 +	chr3R	8097077	intron	CG7900 +	chr3R	8099787	intron	CG7900 +	chr3R_27_8095001	chr3R_8095001	RAL-223
2609	chr3R	8207515	8207577	chr3R	8208410	8208472	F-element	29	893	6.5	10.0	8.2	3.2	957	chr3R	8207515	intergenic	not near genes	chr3R	8207994	intergenic	not near genes	chr3R	8208472	intergenic	not near genes	chr3R_29_8205001	chr3R_8205001	RAL-223
2612	chr3R	8402958	8403032	chr3R	8412174	8412248	roo	23	9214	12.5	3.5	8.0	2.6	9290	chr3R	8402958	intron	CG45263 -	chr3R	8407603	intron	CG45263 -	chr3R	8412248	intron	CG45263 -	chr3R_23_8405001	chr3R_8405001	RAL-223
2615	chr3R	8570438	8570441	chr3R	8575124	8575127	HMS-Beagle	4	4686	21.5	17.0	19.2	0.2	4689	chr3R	8570438	intergenic	not near genes	chr3R	8572782	intergenic	not near genes	chr3R	8575127	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	RAL-223
2616	chr3R	8570443	8570500	chr3R	8575122	8575186	HMS-Beagle	25	4685	10.5	16.5	13.5	1.7	4743	chr3R	8570443	intergenic	not near genes	chr3R	8572814	intergenic	not near genes	chr3R	8575186	intergenic	not near genes	chr3R_25_8570001	chr3R_8570001	RAL-223
2617	chr3R	8601725	8601791	chr3R	8610928	8610982	roo	26	9201	6.0	11.5	8.8	2.7	9257	chr3R	8601725	intron	5-HT2B +	chr3R	8606354	intron	5-HT2B +	chr3R	8610982	intron	5-HT2B +	chr3R_26_8605001	chr3R_8605001	RAL-223
2623	chr3R	8707311	8707377	chr3R	8709802	8709868	jockey	29	2491	10.0	8.5	9.2	2.8	2557	chr3R	8707311	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709868	intergenic	not near genes	chr3R_29_8705001	chr3R_8705001	RAL-223
2626	chr3R	8868755	8868787	chr3R	8872649	8872681	297	7	3894	15.0	8.0	11.5	0.6	3926	chr3R	8868755	intron	pyd -	chr3R	8870718	intron	pyd -	chr3R	8872681	intron	pyd -	chr3R_7_8870001	chr3R_8870001	RAL-223
2630	chr3R	8894828	8894890	chr3R	8896034	8896096	1360	12	1204	7.0	9.5	8.2	1.3	1268	chr3R	8894828	intron	pyd -	chr3R	8895462	intron	pyd -	chr3R	8896096	intron	pyd -	chr3R_12_8895001	chr3R_8895001	RAL-223
2631	chr3R	8898175	8898211	chr3R	8913803	8913839	297	14	15628	9.5	7.0	8.2	1.5	15664	chr3R	8898175	intron	pyd -	chr3R	8906007	intron	pyd -	chr3R	8913839	intron	pyd -	chr3R_14_8905001	chr3R_8905001	RAL-223
2647	chr3R	10196907	10196928	chr3R	10202944	10202965	297	11	6037	18.0	5.0	11.5	0.9	6058	chr3R	10196907	exon	Syn +	chr3R	10199936	intron	Syn +	chr3R	10202965	intron	Syn +	chr3R_11_10195001	chr3R_10195001	RAL-223
2649	chr3R	10231739	10231808	chr3R	10237366	10237435	mdg3	37	5627	7.5	7.5	7.5	4.4	5696	chr3R	10231739	intron	CG42795 +	chr3R	10234587	intron	CG42795 +	chr3R	10237435	intron	CG42795 +	chr3R_37_10230001	chr3R_10230001	RAL-223
2650	chr3R	10255336	10255377	chr3R	10260826	10260867	I-element	12	5489	12.5	9.0	10.8	1.0	5531	chr3R	10255336	intergenic	Sirt6 -,CG3999 +	chr3R	10258102	intron	Sirt6 -	chr3R	10260867	exon	Sirt6 -	chr3R_12_10255001	chr3R_10255001	RAL-223
2661	chr3R	10804138	10804189	chr3R	10811720	10811771	17.6	18	7582	7.0	12.5	9.8	1.7	7633	chr3R	10804138	intergenic	CG14692 -	chr3R	10807954	intergenic	not near genes	chr3R	10811771	3` UTR	CG14693 -	chr3R_18_10805001	chr3R_10805001	RAL-223
2665	chr3R	10957815	10957884	chr3R	10963252	10963323	Rt1c	21	5434	6.0	2.5	4.2	4.0	5508	chr3R	10957815	intergenic	not near genes	chr3R	10960569	intergenic	not near genes	chr3R	10963323	intergenic	not near genes	chr3R_21_10960001	chr3R_10960001	RAL-223
2676	chr3R	11247195	11247226	chr3R	11247326	11247357	INE-1	12	131	17.5	3.5	10.5	1.0	162	chr3R	11247195	intergenic	CG5214 +,CR43283 -	chr3R	11247276	intergenic	CR43283 -,CG5214 +	chr3R	11247357	intergenic	CR43283 -,CG5214 +	chr3R_12_11245001	chr3R_11245001	RAL-223
2680	chr3R	11379197	11379211	chr3R	11388402	11388416	roo	8	9205	8.0	10.0	9.0	0.8	9219	chr3R	11379197	intron	pros +	chr3R	11383806	intron	pros +	chr3R	11388416	intron	pros +	chr3R_8_11380001	chr3R_11380001	RAL-223
2681	chr3R	11379216	11379228	chr3R	11388393	11388433	roo	5	9198	8.0	6.0	7.0	0.6	9217	chr3R	11379216	intron	pros +	chr3R	11383824	intron	pros +	chr3R	11388433	intron	pros +	chr3R_5_11380001	chr3R_11380001	RAL-223
2698	chr3R	11841016	11841045	chr3R	11846257	11846286	BS	9	5239	16.5	11.5	14.0	0.6	5270	chr3R	11841016	intron	CG6959 -	chr3R	11843651	intron	CG6959 -	chr3R	11846286	intron	CG6959 -	chr3R_9_11840001	chr3R_11840001	RAL-223
2699	chr3R	11841050	11841088	chr3R	11846252	11846329	BS	18	5235	6.0	11.0	8.5	1.9	5279	chr3R	11841050	intron	CG6959 -	chr3R	11843690	intron	CG6959 -	chr3R	11846329	intron	CG6959 -	chr3R_18_11840001	chr3R_11840001	RAL-223
2703	chr3R	11957814	11957881	chr3R	11958146	11958213	S-element	16	332	4.5	2.0	3.2	3.8	399	chr3R	11957814	intergenic	not near genes	chr3R	11958014	intergenic	not near genes	chr3R	11958213	intergenic	not near genes	chr3R_16_11955001	chr3R_11955001	RAL-223
2704	chr3R	12022838	12022909	chr3R	12025065	12025136	pogo	33	2227	3.0	12.0	7.5	3.9	2298	chr3R	12022838	intergenic	not near genes	chr3R	12023987	intergenic	not near genes	chr3R	12025136	intergenic	not near genes	chr3R_33_12020001	chr3R_12020001	RAL-223
2726	chr3R	12864521	12864576	chr3R	12865056	12865111	roo	12	535	6.5	5.5	6.0	1.7	590	chr3R	12864521	intergenic	not near genes	chr3R	12864816	intergenic	not near genes	chr3R	12865111	intergenic	not near genes	chr3R_12_12860001	chr3R_12860001	RAL-223
2731	chr3R	12920124	12920138	chr3R	12925377	12925391	copia	11	5251	18.0	9.0	13.5	0.8	5267	chr3R	12920124	intron	beat-Vb +	chr3R	12922758	intron	beat-Vb +	chr3R	12925391	intron	beat-Vb +	chr3R_11_12920001	chr3R_12920001	RAL-223
2732	chr3R	12920140	12920176	chr3R	12925374	12925429	copia	14	5244	8.0	8.0	8.0	1.6	5289	chr3R	12920140	intron	beat-Vb +	chr3R	12922784	intron	beat-Vb +	chr3R	12925429	intron	beat-Vb +	chr3R_14_12920001	chr3R_12920001	RAL-223
2742	chr3R	13135789	13135841	chr3R	13138004	13138056	pogo	11	2215	7.0	7.5	7.2	1.3	2267	chr3R	13135789	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136922	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138056	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_11_13135001	chr3R_13135001	RAL-223
2744	chr3R	13142989	13143064	chr3R	13148615	13148645	mdg3	32	5624	5.0	6.5	5.8	4.7	5656	chr3R	13142989	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145817	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148645	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_32_13145001	chr3R_13145001	RAL-223
2746	chr3R	13314054	13314118	chr3R	13318890	13318956	Doc	18	4836	4.0	12.0	8.0	2.0	4902	chr3R	13314054	intergenic	not near genes	chr3R	13316505	intergenic	not near genes	chr3R	13318956	intergenic	CG45080 -	chr3R_18_13315001	chr3R_13315001	RAL-223
2751	chr3R	13517182	13517258	chr3R	13520049	13520124	jockey	11	2865	6.0	0.0	3.0	2.8	2942	chr3R	13517182	intergenic	not near genes	chr3R	13518653	intergenic	not near genes	chr3R	13520124	intergenic	not near genes	chr3R_11_13515001	chr3R_13515001	RAL-223
2774	chr3R	14180767	14180830	chr3R	14185582	14185645	F-element	19	4815	13.5	9.5	11.5	1.5	4878	chr3R	14180767	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185645	intron	Dop1R1 -	chr3R_19_14180001	chr3R_14180001	RAL-223
2775	chr3R	14194386	14194454	chr3R	14203583	14203653	roo	26	9198	7.0	9.0	8.0	2.9	9267	chr3R	14194386	intron	Dop1R1 -	chr3R	14199020	intron	Dop1R1 -	chr3R	14203653	intron	Dop1R1 -	chr3R_26_14195001	chr3R_14195001	RAL-223
2776	chr3R	14236893	14236928	chr3R	14244437	14244472	Idefix	5	7544	9.5	7.5	8.5	0.5	7579	chr3R	14236893	exon	CG43291 -	chr3R	14240682	intron	CG43291 -	chr3R	14244472	intron	CG43291 -	chr3R_5_14240001	chr3R_14240001	RAL-223
2777	chr3R	14246360	14246418	chr3R	14247886	14247964	jockey	17	1543	13.5	5.5	9.5	1.6	1604	chr3R	14246360	intergenic	not near genes	chr3R	14247162	intergenic	not near genes	chr3R	14247964	intergenic	not near genes	chr3R_17_14245001	chr3R_14245001	RAL-223
2804	chr3R	15041402	15041449	chr3R	15045220	15045264	Doc	21	3818	2.5	14.5	8.5	2.2	3862	chr3R	15041402	intergenic	not near genes	chr3R	15043333	intergenic	not near genes	chr3R	15045264	intergenic	not near genes	chr3R_21_15040001	chr3R_15040001	RAL-223
2806	chr3R	15059239	15059247	chr3R	15059500	15059508	BS	7	261	0.5	4.5	2.5	2.0	269	chr3R	15059239	intron	dpr9 -	chr3R	15059374	intron	dpr9 -	chr3R	15059508	intron	dpr9 -	chr3R_7_15055001	chr3R_15055001	RAL-223
2808	chr3R	15079756	15079838	chr3R	15080047	15080122	pogo	25	288	9.5	0.0	4.8	4.3	366	chr3R	15079756	3` UTR	CG6966 -	chr3R	15079939	3` UTR	CG6966 -	chr3R	15080122	3` UTR	CG6966 -	chr3R_25_15075001	chr3R_15075001	RAL-223
2812	chr3R	15102469	15102530	chr3R	15109775	15109834	412	12	7306	6.0	8.0	7.0	1.5	7365	chr3R	15102469	intron	CG42788 -	chr3R	15106152	intron	CG42788 -	chr3R	15109834	intron	CG42788 -	chr3R_12_15105001	chr3R_15105001	RAL-223
2815	chr3R	15132025	15132065	chr3R	15135135	15135175	Juan	14	3110	11.5	13.5	12.5	1.0	3150	chr3R	15132025	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135175	3` UTR	CG6912 -	chr3R_14_15130001	chr3R_15130001	RAL-223
2821	chr3R	15162500	15162558	chr3R	15167318	15167376	F-element	14	4818	10.5	7.0	8.8	1.4	4876	chr3R	15162500	intron	Gyc88E +	chr3R	15164938	intron	Gyc88E +	chr3R	15167376	intron	Gyc88E +	chr3R_14_15160001	chr3R_15160001	RAL-223
2828	chr3R	15601125	15601189	chr3R	15608697	15608761	412	20	7571	11.0	10.5	10.8	1.7	7636	chr3R	15601125	intergenic	not near genes	chr3R	15604943	intergenic	not near genes	chr3R	15608761	intergenic	not near genes	chr3R_20_15600001	chr3R_15600001	RAL-223
2829	chr3R	15618684	15618756	chr3R	15626208	15626280	blood	31	7523	4.0	10.0	7.0	3.9	7596	chr3R	15618684	intergenic	not near genes	chr3R	15622482	intergenic	not near genes	chr3R	15626280	intergenic	not near genes	chr3R_31_15620001	chr3R_15620001	RAL-223
2832	chr3R	15735193	15735237	chr3R	15739963	15740007	F-element	12	4770	3.0	6.5	4.8	2.1	4814	chr3R	15735193	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15740007	intergenic	not near genes	chr3R_12_15735001	chr3R_15735001	RAL-223
2840	chr3R	16189363	16189428	chr3R	16189816	16189881	invader4	31	453	12.0	6.0	9.0	3.1	518	chr3R	16189363	intron	sra +	chr3R	16189622	intron	sra +	chr3R	16189881	intron	sra +	chr3R_31_16185001	chr3R_16185001	RAL-223
2857	chr3R	16756280	16756320	chr3R	16762521	16762558	diver	14	6240	12.0	8.5	10.2	1.2	6278	chr3R	16756280	intron	bxd -	chr3R	16759419	intron	bxd -	chr3R	16762558	intron	bxd -	chr3R_14_16755001	chr3R_16755001	RAL-223
2858	chr3R	16756324	16756346	chr3R	16762509	16762587	diver	4	6223	7.5	6.0	6.8	0.5	6263	chr3R	16756324	intron	bxd -	chr3R	16759456	intron	bxd -	chr3R	16762587	intron	bxd -	chr3R_4_16755001	chr3R_16755001	RAL-223
2871	chr3R	17294632	17294705	chr3R	17295099	17295188	BS	8	480	3.5	0.0	1.8	2.9	556	chr3R	17294632	intergenic	not near genes	chr3R	17294910	intergenic	not near genes	chr3R	17295188	intergenic	not near genes	chr3R_8_17290001	chr3R_17290001	RAL-223
2872	chr3R	17346650	17346709	chr3R	17348263	17348322	F-element	22	1612	7.5	13.0	10.2	2.0	1672	chr3R	17346650	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348322	intron	beat-IIa -	chr3R_22_17345001	chr3R_17345001	RAL-223
2884	chr3R	17509210	17509246	chr3R	17516808	17516844	412	13	7598	4.5	16.0	10.2	1.2	7634	chr3R	17509210	intergenic	not near genes	chr3R	17513027	intergenic	not near genes	chr3R	17516844	intergenic	not near genes	chr3R_13_17510001	chr3R_17510001	RAL-223
2889	chr3R	17591249	17591317	chr3R	17591735	17591793	F-element	19	485	7.5	10.0	8.8	1.9	544	chr3R	17591249	intergenic	not near genes	chr3R	17591521	intergenic	not near genes	chr3R	17591793	intergenic	not near genes	chr3R_19_17590001	chr3R_17590001	RAL-223
2890	chr3R	17638270	17638338	chr3R	17638806	17638874	roo	23	536	9.0	8.5	8.8	2.3	604	chr3R	17638270	intron	CG43175 +	chr3R	17638572	intron	CG43175 +	chr3R	17638874	intron,intron	CG43175 +,CR45222 +	chr3R_23_17635001	chr3R_17635001	RAL-223
2892	chr3R	17657634	17657661	chr3R	17657822	17657862	INE-1	7	199	0.0	15.0	7.5	0.8	228	chr3R	17657634	intron	CG14322 +	chr3R	17657748	intron	CG14322 +	chr3R	17657862	intron	CG14322 +	chr3R_7_17655001	chr3R_17655001	RAL-223
2908	chr3R	17925811	17925851	chr3R	17927328	17927358	hobo	12	1515	14.5	9.5	12.0	0.9	1547	chr3R	17925811	intron	cpo +	chr3R	17926584	intron	cpo +	chr3R	17927358	intron	cpo +	chr3R_12_17925001	chr3R_17925001	RAL-223
2913	chr3R	18032734	18032806	chr3R	18040456	18040529	opus	12	7723	1.5	6.5	4.0	2.4	7795	chr3R	18032734	intergenic	not near genes	chr3R	18036632	intergenic	not near genes	chr3R	18040529	intergenic	not near genes	chr3R_12_18035001	chr3R_18035001	RAL-223
2915	chr3R	18061570	18061587	chr3R	18063194	18063211	F-element	6	1624	0.0	4.0	2.0	2.0	1641	chr3R	18061570	intergenic	not near genes	chr3R	18062390	intergenic	not near genes	chr3R	18063211	intergenic	not near genes	chr3R_6_18060001	chr3R_18060001	RAL-223
2932	chr3R	18606462	18606525	chr3R	18610744	18610807	F-element	27	4281	7.0	11.0	9.0	2.7	4345	chr3R	18606462	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610807	intron,intron	qin +,CG14304 -	chr3R_27_18605001	chr3R_18605001	RAL-223
2955	chr3R	19193002	19193003	chr3R	19197299	19197357	F-element	7	4326	0.0	7.5	3.8	1.5	4355	chr3R	19193002	intron	CG31475 +	chr3R	19195180	intron	CG31475 +	chr3R	19197357	intron	CG31475 +	chr3R_7_19195001	chr3R_19195001	RAL-223
2974	chr3R	20109490	20109561	chr3R	20114744	20114817	copia	21	5255	5.5	8.0	6.8	2.7	5327	chr3R	20109490	intergenic	not near genes	chr3R	20112154	intergenic	not near genes	chr3R	20114817	intergenic	CG10887 +	chr3R_21_20110001	chr3R_20110001	RAL-223
2975	chr3R	20156650	20156715	chr3R	20165870	20165935	roo	35	9219	11.0	8.5	9.8	3.2	9285	chr3R	20156650	intergenic	not near genes	chr3R	20161292	intergenic	not near genes	chr3R	20165935	intergenic	not near genes	chr3R_35_20160001	chr3R_20160001	RAL-223
2980	chr3R	20245231	20245292	chr3R	20248893	20248953	F-element	7	3661	7.5	0.0	3.8	1.5	3722	chr3R	20245231	3` UTR	Nlg4 +	chr3R	20247092	intergenic	not near genes	chr3R	20248953	intergenic	not near genes	chr3R_7_20245001	chr3R_20245001	RAL-223
2983	chr3R	20266478	20266538	chr3R	20272999	20273059	Burdock	26	6520	12.0	9.0	10.5	2.3	6581	chr3R	20266478	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273059	intron	cic +	chr3R_26_20265001	chr3R_20265001	RAL-223
2986	chr3R	20330962	20331025	chr3R	20331498	20331561	roo	17	536	9.0	8.0	8.5	1.8	599	chr3R	20330962	intergenic	Sirt2 +	chr3R	20331262	intergenic	Sirt2 +	chr3R	20331561	intergenic	not near genes	chr3R_17_20330001	chr3R_20330001	RAL-223
2992	chr3R	20512943	20512991	chr3R	20515705	20515743	opus	11	2761	8.5	0.0	4.2	2.1	2800	chr3R	20512943	intergenic	CG4288 -	chr3R	20514343	intergenic	not near genes	chr3R	20515743	intergenic	not near genes	chr3R_11_20510001	chr3R_20510001	RAL-223
3002	chr3R	20854426	20854509	chr3R	20859271	20859348	Doc	23	4843	5.5	7.0	6.2	3.2	4922	chr3R	20854426	intron	Ir93a -	chr3R	20856887	intron	Ir93a -	chr3R	20859348	exon	Ir93a -	chr3R_23_20855001	chr3R_20855001	RAL-223
3006	chr3R	21141632	21141705	chr3R	21150163	21150229	Tirant	15	8528	6.0	6.5	6.2	2.1	8597	chr3R	21141632	intron	SNF4Agamma +	chr3R	21145930	intron	SNF4Agamma +	chr3R	21150229	intron	SNF4Agamma +	chr3R_15_21145001	chr3R_21145001	RAL-223
3028	chr3R	21761078	21761155	chr3R	21768520	21768603	mdg1	27	7440	5.5	5.5	5.5	4.2	7525	chr3R	21761078	exon	CG42335 +	chr3R	21764840	intron	CG42335 +	chr3R	21768603	exon	CG42335 +	chr3R_27_21760001	chr3R_21760001	RAL-223
3040	chr3R	22239453	22239525	chr3R	22248563	22248623	roo	18	9097	5.0	2.5	3.8	3.8	9170	chr3R	22239453	intron	SKIP +	chr3R	22244038	intron	SKIP +	chr3R	22248623	intron	SKIP +	chr3R_18_22240001	chr3R_22240001	RAL-223
3046	chr3R	22450501	22450569	chr3R	22453191	22453259	NOF	28	2690	6.5	15.0	10.8	2.4	2758	chr3R	22450501	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453259	intron	CG34376 +	chr3R_28_22450001	chr3R_22450001	RAL-223
3055	chr3R	22881190	22881230	chr3R	22884945	22884985	Doc	11	3755	5.5	12.0	8.8	1.1	3795	chr3R	22881190	intergenic	not near genes	chr3R	22883088	intergenic	not near genes	chr3R	22884985	intergenic	not near genes	chr3R_11_22880001	chr3R_22880001	RAL-223
3076	chr3R	23515525	23515531	chr3R	23516735	23516742	1360	5	1211	9.5	0.5	5.0	0.8	1217	chr3R	23515525	intron	Irk2 -	chr3R	23516134	intron	Irk2 -	chr3R	23516742	intron	Irk2 -	chr3R_5_23515001	chr3R_23515001	RAL-223
3078	chr3R	23558353	23558429	chr3R	23560184	23560260	Bari1	29	1831	5.5	7.0	6.2	4.0	1907	chr3R	23558353	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560260	intron	beat-IV +	chr3R_29_23555001	chr3R_23555001	RAL-223
3084	chr3R	23684653	23684719	chr3R	23685189	23685255	roo	18	532	5.5	11.5	8.5	1.9	602	chr3R	23684653	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685255	exon	CG18754 +	chr3R_18_23680001	chr3R_23680001	RAL-223
3086	chr3R	23835362	23835428	chr3R	23844562	23844628	roo	30	9200	10.0	1.0	5.5	4.6	9266	chr3R	23835362	intron	CG34355 +	chr3R	23839995	intron	CG34355 +	chr3R	23844628	intron	CG34355 +	chr3R_30_23835001	chr3R_23835001	RAL-223
3087	chr3R	23851042	23851080	chr3R	23858759	23858797	opus	8	7717	8.5	12.5	10.5	0.7	7755	chr3R	23851042	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858797	intergenic	not near genes	chr3R_8_23850001	chr3R_23850001	RAL-223
3095	chr3R	24072057	24072095	chr3R	24072545	24072583	jockey	21	486	13.0	13.0	13.0	1.5	526	chr3R	24072057	intron	4EHP -	chr3R	24072320	intron	4EHP -	chr3R	24072583	intron	4EHP -	chr3R_21_24070001	chr3R_24070001	RAL-223
3096	chr3R	24076881	24076942	chr3R	24078398	24078424	hobo	28	1514	6.5	11.5	9.0	2.8	1543	chr3R	24076881	intron	4EHP -	chr3R	24077652	intron	4EHP -	chr3R	24078424	intron	4EHP -	chr3R_28_24075001	chr3R_24075001	RAL-223
3098	chr3R	24207193	24207208	chr3R	24212312	24212334	flea	12	5124	14.5	14.5	14.5	0.8	5141	chr3R	24207193	intron	twin -	chr3R	24209764	intron	twin -	chr3R	24212334	intron	twin -	chr3R_12_24205001	chr3R_24205001	RAL-223
3099	chr3R	24207209	24207241	chr3R	24212310	24212367	flea	10	5122	10.0	14.0	12.0	0.8	5158	chr3R	24207209	intron	twin -	chr3R	24209788	intron	twin -	chr3R	24212367	intron	twin -	chr3R_10_24205001	chr3R_24205001	RAL-223
3111	chr3R	24493250	24493304	chr3R	24493528	24493582	BS	22	278	8.0	14.5	11.2	1.8	332	chr3R	24493250	intergenic	not near genes	chr3R	24493416	intergenic	not near genes	chr3R	24493582	intergenic	not near genes	chr3R_22_24490001	chr3R_24490001	RAL-223
3114	chr3R	24594632	24594665	chr3R	24594922	24594955	pogo	15	290	6.5	16.0	11.2	1.2	323	chr3R	24594632	intron	mld +	chr3R	24594794	intron	mld +	chr3R	24594955	intron	mld +	chr3R_15_24590001	chr3R_24590001	RAL-223
3119	chr3R	24730051	24730120	chr3R	24732479	24732555	Doc	13	2429	8.0	6.0	7.0	1.6	2504	chr3R	24730051	intron	tok +	chr3R	24731303	intron	tok +	chr3R	24732555	intron	tok +	chr3R_13_24730001	chr3R_24730001	RAL-223
3125	chr3R	24927084	24927146	chr3R	24931925	24931984	Doc	22	4841	8.5	10.5	9.5	2.1	4900	chr3R	24927084	3` UTR	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931984	intergenic	CG11771 +	chr3R_22_24925001	chr3R_24925001	RAL-223
3153	chr3R	25725784	25725854	chr3R	25734994	25735063	roo	24	9209	6.0	9.5	7.8	2.7	9279	chr3R	25725784	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735063	intron	LpR2 -	chr3R_24_25730001	chr3R_25730001	RAL-223
3156	chr3R	25832660	25832715	chr3R	25841892	25841947	roo	19	9231	5.0	13.5	9.2	1.9	9287	chr3R	25832660	exon	alpha4GT2 +	chr3R	25837304	intron	alpha4GT2 +	chr3R	25841947	exon	alpha4GT2 +	chr3R_19_25835001	chr3R_25835001	RAL-223
3162	chr3R	26108781	26108793	chr3R	26117414	26117426	Tirant	5	8633	20.5	0.0	10.2	0.4	8645	chr3R	26108781	5` UTR	CG31324 +	chr3R	26113104	intron	CG31324 +	chr3R	26117426	intron	CG31324 +	chr3R_5_26110001	chr3R_26110001	RAL-223
3166	chr3R	26215755	26215789	chr3R	26221746	26221794	297	8	6004	7.0	9.0	8.0	0.9	6039	chr3R	26215755	intergenic	not near genes	chr3R	26218774	intergenic	not near genes	chr3R	26221794	intergenic	not near genes	chr3R_8_26215001	chr3R_26215001	RAL-223
3173	chr3R	26376278	26376353	chr3R	26385488	26385563	roo	27	9209	7.5	10.0	8.8	2.8	9285	chr3R	26376278	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385563	intergenic	not near genes	chr3R_27_26380001	chr3R_26380001	RAL-223
3178	chr3R	26510474	26510535	chr3R	26519579	26519608	roo	25	9104	3.5	8.0	5.8	3.7	9134	chr3R	26510474	intron	plum -	chr3R	26515041	intron	plum -	chr3R	26519608	intron,5` UTR	plum -,CR45226 +	chr3R_25_26515001	chr3R_26515001	RAL-223
3180	chr3R	26558284	26558346	chr3R	26565646	26565707	Stalker4	27	7357	10.0	10.5	10.2	2.4	7423	chr3R	26558284	intron	scrib +	chr3R	26561996	intron	scrib +	chr3R	26565707	intron	scrib +	chr3R_27_26560001	chr3R_26560001	RAL-223
3184	chr3R	26642701	26642751	chr3R	26643145	26643193	jockey	27	443	13.5	11.5	12.5	2.0	492	chr3R	26642701	intergenic	not near genes	chr3R	26642947	intergenic	not near genes	chr3R	26643193	intergenic	not near genes	chr3R_27_26640001	chr3R_26640001	RAL-223
3186	chr3R	26810505	26810574	chr3R	26811040	26811109	roo	23	535	9.0	8.5	8.8	2.3	604	chr3R	26810505	intron	Tl +	chr3R	26810807	intron	Tl +	chr3R	26811109	intron	Tl +	chr3R_23_26810001	chr3R_26810001	RAL-223
3189	chr3R	27007360	27007429	chr3R	27016545	27016614	roo	28	9183	6.0	11.0	8.5	2.9	9254	chr3R	27007360	intron	RYa-R +	chr3R	27011987	intron	RYa-R +	chr3R	27016614	intron	RYa-R +	chr3R_28_27010001	chr3R_27010001	RAL-223
3198	chr3R	27140466	27140538	chr3R	27148126	27148184	412	31	7659	9.5	12.0	10.8	2.6	7718	chr3R	27140466	intron	CG6051 -	chr3R	27144325	intron	CG6051 -	chr3R	27148184	intron	CG6051 -	chr3R_31_27140001	chr3R_27140001	RAL-223
3205	chr3R	27342752	27342821	chr3R	27351383	27351452	Tirant	36	8631	8.0	10.0	9.0	3.6	8700	chr3R	27342752	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351452	intron	CG42534 +	chr3R_36_27345001	chr3R_27345001	RAL-223
3211	chr3R	27521105	27521189	chr3R	27530364	27530452	roo	11	9260	4.0	0.5	2.2	3.4	9347	chr3R	27521105	intron	CG12885 +	chr3R	27525778	intron	CG12885 +	chr3R	27530452	intron	CG12885 +	chr3R_11_27525001	chr3R_27525001	RAL-223
3218	chr3R	27725549	27725596	chr3R	27731042	27731089	I-element	11	5492	8.5	12.0	10.2	1.0	5540	chr3R	27725549	intergenic	not near genes	chr3R	27728319	intergenic	not near genes	chr3R	27731089	intergenic	not near genes	chr3R_11_27725001	chr3R_27725001	RAL-223
3221	chr3R	27791604	27791648	chr3R	27794794	27794837	Rt1c	15	3198	11.0	10.5	10.8	1.3	3233	chr3R	27791604	intron	CG34353 -	chr3R	27793220	intron	CG34353 -	chr3R	27794837	intron	CG34353 -	chr3R_15_27790001	chr3R_27790001	RAL-223
3225	chr3R	27856721	27856785	chr3R	27858254	27858313	hopper2	27	1533	10.5	12.5	11.5	2.2	1592	chr3R	27856721	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858313	intron	CG34353 -	chr3R_27_27855001	chr3R_27855001	RAL-223
3226	chr3R	27862915	27862975	chr3R	27868270	27868330	Transpac	21	5354	12.0	12.5	12.2	1.6	5415	chr3R	27862915	intron	CG34353 -	chr3R	27865622	intron	CG34353 -	chr3R	27868330	intron	CG34353 -	chr3R_21_27865001	chr3R_27865001	RAL-223
3227	chr3R	27875658	27875724	chr3R	27882763	27882829	297	21	7105	8.0	10.5	9.2	2.1	7171	chr3R	27875658	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882829	intron	CG34353 -	chr3R_21_27875001	chr3R_27875001	RAL-223
3232	chr3R	28068474	28068480	chr3R	28073966	28073972	I-element	4	5492	0.0	15.0	7.5	0.5	5498	chr3R	28068474	intron	CG34362 +	chr3R	28071223	intron	CG34362 +	chr3R	28073972	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-223
3233	chr3R	28068484	28068516	chr3R	28073951	28074008	I-element	11	5489	0.0	12.5	6.2	1.5	5524	chr3R	28068484	intron	CG34362 +	chr3R	28071246	intron	CG34362 +	chr3R	28074008	intron	CG34362 +	chr3R_11_28070001	chr3R_28070001	RAL-223
3239	chr3R	28173631	28173685	chr3R	28181111	28181165	mdg1	19	7480	7.0	8.0	7.5	2.2	7534	chr3R	28173631	intron	CG34354 +	chr3R	28177398	intron	CG34354 +	chr3R	28181165	intron	CG34354 +	chr3R_19_28175001	chr3R_28175001	RAL-223
3240	chr3R	28253299	28253359	chr3R	28255859	28255919	jockey	18	2558	10.5	9.5	10.0	1.6	2620	chr3R	28253299	intergenic	not near genes	chr3R	28254609	intergenic	not near genes	chr3R	28255919	intergenic	not near genes	chr3R_18_28250001	chr3R_28250001	RAL-223
3242	chr3R	28302067	28302122	chr3R	28302556	28302611	jockey	28	489	9.0	7.5	8.2	3.0	544	chr3R	28302067	intergenic	not near genes	chr3R	28302339	intergenic	not near genes	chr3R	28302611	intergenic	not near genes	chr3R_28_28300001	chr3R_28300001	RAL-223
3262	chr3R	28758244	28758255	chr3R	28763911	28763922	roo	8	5667	15.5	0.0	7.8	0.9	5678	chr3R	28758244	intergenic	aqrs -	chr3R	28761083	intergenic	not near genes	chr3R	28763922	intergenic	not near genes	chr3R_8_28760001	chr3R_28760001	RAL-223
3263	chr3R	28758272	28758319	chr3R	28771329	28771376	Stalker4	15	13057	3.5	7.0	5.2	2.4	13104	chr3R	28758272	intergenic	aqrs -	chr3R	28764824	intergenic	not near genes	chr3R	28771376	intergenic	not near genes	chr3R_15_28760001	chr3R_28760001	RAL-223
3265	chr3R	28792830	28792861	chr3R	28797975	28798006	jockey	14	5144	18.0	7.5	12.8	1.0	5176	chr3R	28792830	intergenic	not near genes	chr3R	28795418	intergenic	not near genes	chr3R	28798006	intergenic	not near genes	chr3R_14_28795001	chr3R_28795001	RAL-223
3266	chr3R	28792862	28792897	chr3R	28797973	28798040	jockey	14	5138	9.5	7.5	8.5	1.5	5178	chr3R	28792862	intergenic	not near genes	chr3R	28795451	intergenic	not near genes	chr3R	28798040	intergenic	not near genes	chr3R_14_28795001	chr3R_28795001	RAL-223
3280	chr3R	29079352	29079407	chr3R	29080774	29080837	NOF	14	1426	10.0	0.0	5.0	2.3	1485	chr3R	29079352	intron	CG11873 +	chr3R	29080094	intron	CG11873 +	chr3R	29080837	intron	CG11873 +	chr3R_14_29080001	chr3R_29080001	RAL-223
3289	chr3R	29319776	29319848	chr3R	29320145	29320217	jockey	14	369	7.5	12.0	9.8	1.3	441	chr3R	29319776	intergenic	Cnx99A -	chr3R	29319996	intergenic	Cnx99A -	chr3R	29320217	intergenic	not near genes	chr3R_14_29315001	chr3R_29315001	RAL-223
3294	chr3R	29406566	29406630	chr3R	29407902	29407962	jockey	17	1336	9.0	9.5	9.2	1.7	1396	chr3R	29406566	intron	Ptp99A +	chr3R	29407264	intron	Ptp99A +	chr3R	29407962	intron	Ptp99A +	chr3R_17_29405001	chr3R_29405001	RAL-223
3311	chr3R	29738223	29738293	chr3R	29739740	29739810	hobo	22	1516	8.0	10.0	9.0	2.2	1587	chr3R	29738223	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739810	5` UTR	CG1969 +	chr3R_22_29735001	chr3R_29735001	RAL-223
3313	chr3R	29760322	29760381	chr3R	29761573	29761632	pogo	20	1250	8.5	0.0	4.2	3.8	1310	chr3R	29760322	intergenic	not near genes	chr3R	29760977	intergenic	not near genes	chr3R	29761632	intergenic	not near genes	chr3R_20_29760001	chr3R_29760001	RAL-223
3315	chr3R	29881972	29882019	chr3R	29891179	29891226	roo	16	9206	16.0	9.5	12.8	1.2	9254	chr3R	29881972	intron	CG31038 +	chr3R	29886599	intron	CG31038 +	chr3R	29891226	intron	CG31038 +	chr3R_16_29885001	chr3R_29885001	RAL-223
3316	chr3R	29882022	29882044	chr3R	29891178	29891251	roo	14	9203	10.0	9.0	9.5	1.3	9229	chr3R	29882022	intron	CG31038 +	chr3R	29886636	intron	CG31038 +	chr3R	29891251	intron	CG31038 +	chr3R_14_29885001	chr3R_29885001	RAL-223
3326	chr3R	30084806	30084839	chr3R	30086325	30086356	hobo	9	1519	4.5	12.5	8.5	0.9	1550	chr3R	30084806	intron	sima +	chr3R	30085581	intron	sima +	chr3R	30086356	intron	sima +	chr3R_9_30085001	chr3R_30085001	RAL-223
3327	chr3R	30084850	30084861	chr3R	30086359	30086378	hobo	5	1515	0.0	17.5	8.8	0.5	1528	chr3R	30084850	intron	sima +	chr3R	30085614	intron	sima +	chr3R	30086378	intron	sima +	chr3R_5_30085001	chr3R_30085001	RAL-223
3328	chr3R	30084864	30084878	chr3R	30086334	30086374	hobo	9	1508	0.0	14.5	7.2	1.1	1510	chr3R	30084864	intron	sima +	chr3R	30085619	intron	sima +	chr3R	30086374	intron	sima +	chr3R_9_30085001	chr3R_30085001	RAL-223
3334	chr3R	30238730	30238789	chr3R	30239943	30240003	1360	24	1213	10.5	8.0	9.2	2.4	1273	chr3R	30238730	intergenic	not near genes	chr3R	30239366	intergenic	not near genes	chr3R	30240003	intergenic	not near genes	chr3R_24_30235001	chr3R_30235001	RAL-223
3338	chr3R	30317327	30317359	chr3R	30324969	30325001	roo	14	7641	0.0	0.5	0.2	11.7	7674	chr3R	30317327	intron	hdc +	chr3R	30321164	intron	hdc +	chr3R	30325001	intron	hdc +	chr3R_14_30320001	chr3R_30320001	RAL-223
3341	chr3R	30375499	30375569	chr3R	30383172	30383232	412	14	7672	7.0	11.0	9.0	1.4	7733	chr3R	30375499	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383232	intergenic	not near genes	chr3R_14_30375001	chr3R_30375001	RAL-223
3342	chr3R	30396177	30396237	chr3R	30404493	30404549	roo	33	8316	9.5	14.5	12.0	2.5	8372	chr3R	30396177	intergenic	not near genes	chr3R	30400363	intergenic	not near genes	chr3R	30404549	5` UTR	CR45570 +	chr3R_33_30400001	chr3R_30400001	RAL-223
3349	chr3R	30480425	30480503	chr3R	30482943	30483021	jockey	25	2515	9.5	0.0	4.8	4.3	2596	chr3R	30480425	intron	PH4alphaEFB +	chr3R	30481723	intron	PH4alphaEFB +	chr3R	30483021	intron	PH4alphaEFB +	chr3R_25_30480001	chr3R_30480001	RAL-223
3360	chr3R	30679473	30679546	chr3R	30686992	30687065	blood	26	7519	7.0	7.5	7.2	3.2	7592	chr3R	30679473	intergenic	not near genes	chr3R	30683269	intergenic	not near genes	chr3R	30687065	intergenic	not near genes	chr3R_26_30680001	chr3R_30680001	RAL-223
3363	chr3R	30818775	30818838	chr3R	30820390	30820445	1360	28	1613	11.0	14.5	12.8	2.0	1670	chr3R	30818775	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820445	intron	cindr +	chr3R_28_30815001	chr3R_30815001	RAL-223
3377	chr3R	31074183	31074261	chr3R	31081831	31081916	springer	23	7653	6.5	2.5	4.5	4.2	7733	chr3R	31074183	intron	Sox100B +	chr3R	31078050	intron	Sox100B +	chr3R	31081916	exon	Sox100B +	chr3R_23_31075001	chr3R_31075001	RAL-223
3386	chr3R	31279333	31279397	chr3R	31285574	31285637	diver	35	6240	10.5	11.0	10.8	3.0	6304	chr3R	31279333	intergenic	not near genes	chr3R	31282485	intergenic	not near genes	chr3R	31285637	intergenic	not near genes	chr3R_35_31280001	chr3R_31280001	RAL-223
3387	chr3R	31413046	31413072	chr3R	31418296	31418315	copia	11	5249	13.5	6.0	9.8	1.0	5269	chr3R	31413046	intron	Gprk2 +	chr3R	31415680	intron	Gprk2 +	chr3R	31418315	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-223
3388	chr3R	31413083	31413123	chr3R	31418292	31418373	copia	16	5247	7.0	5.5	6.2	2.2	5290	chr3R	31413083	intron	Gprk2 +	chr3R	31415728	intron	Gprk2 +	chr3R	31418373	intron	Gprk2 +	chr3R_16_31415001	chr3R_31415001	RAL-223
3400	chr3R	31691487	31691551	chr3R	31696303	31696367	Doc	29	4816	9.5	11.5	10.5	2.5	4880	chr3R	31691487	intergenic	not near genes	chr3R	31693927	intergenic	not near genes	chr3R	31696367	intergenic	not near genes	chr3R_29_31690001	chr3R_31690001	RAL-223
3412	chr3R	31997944	31998014	chr3R	32005464	32005534	blood	23	7519	8.5	7.0	7.8	2.6	7590	chr3R	31997944	intron	heph -	chr3R	32001739	intron	heph -	chr3R	32005534	intron	heph -	chr3R_23_32000001	chr3R_32000001	RAL-223
3417	chr4	76453	76504	chr4	81946	81997	I-element	16	5493	10.0	7.0	8.5	1.7	5544	chr4	76453	intron	pan +	chr4	79225	intron	pan +	chr4	81997	intron	pan +	chr4_16_75001	chr4_75001	RAL-223
3418	chr4	319954	320016	chr4	328180	328242	Stalker2	19	8226	6.5	9.0	7.8	2.2	8288	chr4	319954	3` UTR	CG32850 +	chr4	324098	intron	CG32850 +	chr4	328242	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_19_320001	chr4_320001	RAL-223
3420	chr4	671566	671623	chr4	680199	680255	Tirant	21	8633	9.0	6.5	7.8	2.4	8689	chr4	671566	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680255	intron	CG11360 +	chr4_21_675001	chr4_675001	RAL-223
3428	chrX	295809	295877	chrX	303479	303547	412	24	7670	8.0	8.5	8.2	2.6	7738	chrX	295809	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303547	intron	CG3777 +	chrX_24_295001	chrX_295001	RAL-223
3429	chrX	318431	318491	chrX	323567	323612	flea	21	5135	10.5	11.0	10.8	1.8	5181	chrX	318431	intron,intron	CG3777 +,CG32816 -	chrX	321022	intron,intron	CG3777 +,CG32816 -	chrX	323612	intron,intron	CG3777 +,CG32816 -	chrX_21_320001	chrX_320001	RAL-223
3430	chrX	428383	428443	chrX	434618	434678	3S18	19	6235	13.0	11.5	12.2	1.4	6295	chrX	428383	intron	CG32816 -	chrX	431530	intron	CG32816 -	chrX	434678	intron	CG32816 -	chrX_19_430001	chrX_430001	RAL-223
3431	chrX	551382	551400	chrX	558994	559012	412	4	7612	15.5	7.5	11.5	0.3	7630	chrX	551382	intron	Appl +	chrX	555197	intron	Appl +	chrX	559012	intron	Appl +	chrX_4_555001	chrX_555001	RAL-223
3432	chrX	551405	551453	chrX	558992	559064	412	13	7610	3.5	7.0	5.2	2.1	7659	chrX	551405	intron	Appl +	chrX	555234	intron	Appl +	chrX	559064	intron	Appl +	chrX_13_555001	chrX_555001	RAL-223
3437	chrX	812227	812300	chrX	817908	817925	297	23	5678	7.5	7.5	7.5	2.7	5698	chrX	812227	intron	CG43867 -	chrX	815076	intron	CG43867 -	chrX	817925	intron	CG43867 -	chrX_23_815001	chrX_815001	RAL-223
3438	chrX	827565	827623	chrX	835402	835465	roo	32	7841	7.5	11.5	9.5	3.0	7900	chrX	827565	intron	CG43867 -	chrX	831515	intron	CG43867 -	chrX	835465	intron	CG43867 -	chrX_32_830001	chrX_830001	RAL-223
3439	chrX	906657	906732	chrX	908496	908571	S-element	30	1838	10.5	5.0	7.8	3.4	1914	chrX	906657	intron	CG43867 -	chrX	907614	intron	CG43867 -	chrX	908571	intron	CG43867 -	chrX_30_905001	chrX_905001	RAL-223
3440	chrX	1033312	1033324	chrX	1040995	1041007	412	6	7681	18.0	8.5	13.2	0.4	7695	chrX	1033312	intron	su(w[a]) +	chrX	1037160	intron	su(w[a]) +	chrX	1041007	intron	su(w[a]) +	chrX_6_1035001	chrX_1035001	RAL-223
3441	chrX	1063714	1063747	chrX	1072557	1072590	roo	17	8843	17.0	8.5	12.8	1.2	8876	chrX	1063714	intron	CR44779 +	chrX	1068152	intron	CR44779 +	chrX	1072590	intron	CR44779 +	chrX_17_1065001	chrX_1065001	RAL-223
3445	chrX	1357734	1357791	chrX	1367954	1368011	Doc	26	10220	8.0	6.0	7.0	3.2	10277	chrX	1357734	intergenic	png -	chrX	1362872	intergenic	not near genes	chrX	1368011	intergenic	not near genes	chrX_26_1360001	chrX_1360001	RAL-223
3447	chrX	1517995	1518067	chrX	1523447	1523519	jockey	24	5451	10.5	7.5	9.0	2.4	5524	chrX	1517995	intergenic	inc +	chrX	1520757	intergenic	not near genes	chrX	1523519	intergenic	not near genes	chrX_24_1520001	chrX_1520001	RAL-223
3449	chrX	1930494	1930570	chrX	1938115	1938191	opus	21	7620	6.5	9.0	7.8	2.4	7697	chrX	1930494	3` UTR	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938191	3` UTR	CG3857 -	chrX_21_1930001	chrX_1930001	RAL-223
3450	chrX	1954841	1954917	chrX	1962830	1962901	Stalker2	26	7983	2.5	3.0	2.8	6.8	8060	chrX	1954841	intron	Hr4 +	chrX	1958871	intron	Hr4 +	chrX	1962901	intron	Hr4 +	chrX_26_1955001	chrX_1955001	RAL-223
3453	chrX	2308795	2308817	chrX	2317428	2317450	Tirant	5	8632	7.5	16.0	11.8	0.4	8655	chrX	2308795	intron	phl +	chrX	2313122	intron	phl +	chrX	2317450	intron	phl +	chrX_5_2310001	chrX_2310001	RAL-223
3456	chrX	2399796	2399871	chrX	2408188	2408248	roo	22	8391	8.5	0.0	4.2	4.2	8452	chrX	2399796	intergenic	not near genes	chrX	2404022	intergenic	not near genes	chrX	2408248	intergenic	not near genes	chrX_22_2400001	chrX_2400001	RAL-223
3460	chrX	2610342	2610407	chrX	2617509	2617574	HMS-Beagle	18	7167	9.0	7.0	8.0	2.0	7232	chrX	2610342	intergenic	CG8636 -	chrX	2613958	intergenic	not near genes	chrX	2617574	intergenic	Tsp3A -	chrX_18_2610001	chrX_2610001	RAL-223
3461	chrX	2664345	2664406	chrX	2665541	2665602	1360	19	1196	10.5	7.0	8.8	1.9	1257	chrX	2664345	intron	sgg +	chrX	2664974	intron	sgg +	chrX	2665602	intron	sgg +	chrX_19_2660001	chrX_2660001	RAL-223
3463	chrX	2823754	2823775	chrX	2832352	2832362	roo	10	8595	9.5	12.0	10.8	0.8	8608	chrX	2823754	intron	kirre +	chrX	2828058	intron	kirre +	chrX	2832362	intron	kirre +	chrX_10_2825001	chrX_2825001	RAL-223
3464	chrX	2844860	2844927	chrX	2852320	2852387	mdg1	23	7460	8.0	6.5	7.2	2.8	7527	chrX	2844860	intron	kirre +	chrX	2848624	intron	kirre +	chrX	2852387	intron	kirre +	chrX_23_2845001	chrX_2845001	RAL-223
3468	chrX	3057978	3058036	chrX	3058269	3058327	pogo	23	291	8.5	7.0	7.8	2.6	349	chrX	3057978	intron	kirre +	chrX	3058152	intron	kirre +	chrX	3058327	intron	kirre +	chrX_23_3055001	chrX_3055001	RAL-223
3469	chrX	3075582	3075588	chrX	3080943	3080949	Transpac	4	5361	16.5	0.0	8.2	0.4	5367	chrX	3075582	intron	kirre +	chrX	3078266	intron	kirre +	chrX	3080949	intron	kirre +	chrX_4_3075001	chrX_3075001	RAL-223
3474	chrX	3218491	3218499	chrX	3227690	3227698	roo	6	9199	1.0	18.0	9.5	0.6	9207	chrX	3218491	intron	dnc +	chrX	3223094	intron	dnc +	chrX	3227698	intron	dnc +	chrX_6_3220001	chrX_3220001	RAL-223
3482	chrX	3414969	3414992	chrX	3421204	3421227	3S18	6	6235	16.5	7.5	12.0	0.5	6258	chrX	3414969	intron,intron	CR44999 +,CG12535 -	chrX	3418098	intron,intron	CR44999 +,CG12535 -	chrX	3421227	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-223
3483	chrX	3414996	3415023	chrX	3421201	3421258	3S18	11	6232	10.0	7.0	8.5	1.2	6262	chrX	3414996	intron,intron	CR44999 +,CG12535 -	chrX	3418127	intron,intron	CR44999 +,CG12535 -	chrX	3421258	intron,intron	CR44999 +,CG12535 -	chrX_11_3415001	chrX_3415001	RAL-223
3485	chrX	3493044	3493116	chrX	3502253	3502322	roo	15	9207	5.5	2.0	3.8	3.1	9278	chrX	3493044	intron,exon	CR44999 +,Gas8 -	chrX	3497683	intron,intron	CR44999 +,Gas8 -	chrX	3502322	intron,intron	CR44999 +,Gas8 -	chrX_15_3495001	chrX_3495001	RAL-223
3490	chrX	3597510	3597574	chrX	3619728	3619792	roo	22	22217	11.0	6.0	8.5	2.3	22282	chrX	3597510	intron	AstA-R1 +	chrX	3608651	intron	AstA-R1 +	chrX	3619792	intron	AstA-R1 +	chrX_22_3605001	chrX_3605001	RAL-223
3496	chrX	3726723	3726724	chrX	3730170	3730171	NOF	4	3447	0.5	0.0	0.2	3.3	3448	chrX	3726723	intron	tlk +	chrX	3728447	intron	tlk +	chrX	3730171	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-223
3497	chrX	3726725	3726752	chrX	3730169	3730199	NOF	10	3446	0.5	0.0	0.2	8.3	3474	chrX	3726725	intron	tlk +	chrX	3728462	intron	tlk +	chrX	3730199	intron	tlk +	chrX_10_3725001	chrX_3725001	RAL-223
3501	chrX	3842302	3842352	chrX	3842570	3842620	pogo	22	267	4.5	3.5	4.0	4.4	318	chrX	3842302	intron	ec +	chrX	3842461	intron	ec +	chrX	3842620	intron	ec +	chrX_22_3840001	chrX_3840001	RAL-223
3508	chrX	3986832	3986886	chrX	3994515	3994543	412	19	7681	8.5	8.5	8.5	2.0	7711	chrX	3986832	intergenic	not near genes	chrX	3990688	intergenic	not near genes	chrX	3994543	intergenic	not near genes	chrX_19_3990001	chrX_3990001	RAL-223
3514	chrX	4157848	4157915	chrX	4164951	4165018	297	25	7103	7.5	8.5	8.0	2.8	7170	chrX	4157848	intron	Fas2 -	chrX	4161433	intron	Fas2 -	chrX	4165018	intron	Fas2 -	chrX_25_4160001	chrX_4160001	RAL-223
3526	chrX	4700343	4700418	chrX	4700739	4700811	jockey	22	393	7.5	9.5	8.5	2.3	468	chrX	4700343	3` UTR	ctp +	chrX	4700577	3` UTR	ctp +	chrX	4700811	3` UTR	ctp +	chrX_22_4700001	chrX_4700001	RAL-223
3528	chrX	4763208	4763275	chrX	4763746	4763813	Stalker4	25	538	6.0	6.0	6.0	3.6	605	chrX	4763208	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763813	intergenic	not near genes	chrX_25_4760001	chrX_4760001	RAL-223
3529	chrX	4792339	4792402	chrX	4792822	4792840	jockey	24	480	6.5	5.5	6.0	3.4	501	chrX	4792339	intergenic	not near genes	chrX	4792590	intergenic	not near genes	chrX	4792840	intergenic	not near genes	chrX_24_4790001	chrX_4790001	RAL-223
3530	chrX	4827931	4827999	chrX	4835347	4835364	Stalker4	28	7414	6.5	7.5	7.0	3.5	7433	chrX	4827931	intergenic	not near genes	chrX	4831648	intergenic	not near genes	chrX	4835364	intergenic	not near genes	chrX_28_4830001	chrX_4830001	RAL-223
3537	chrX	4989998	4990069	chrX	4997262	4997333	roo	23	7263	5.0	8.0	6.5	3.1	7335	chrX	4989998	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997333	intron	CR44833 -	chrX_23_4990001	chrX_4990001	RAL-223
3540	chrX	5096245	5096300	chrX	5103845	5103915	springer	17	7614	4.5	5.0	4.8	2.9	7670	chrX	5096245	intron,intron	CG15465 +,rg +	chrX	5100080	intron,intron	CG15465 +,rg +	chrX	5103915	intron,intron	CG15465 +,rg +	chrX_17_5100001	chrX_5100001	RAL-223
3545	chrX	5338665	5338719	chrX	5339968	5339976	jockey	13	1299	8.0	4.5	6.2	1.8	1311	chrX	5338665	intergenic	not near genes	chrX	5339320	intergenic	not near genes	chrX	5339976	intergenic	SK +	chrX_13_5335001	chrX_5335001	RAL-223
3549	chrX	5389785	5389788	chrX	5392947	5392950	297	5	3162	5.0	18.0	11.5	0.4	3165	chrX	5389785	intron	SK +	chrX	5391368	intron	SK +	chrX	5392950	intron	SK +	chrX_5_5390001	chrX_5390001	RAL-223
3552	chrX	5524795	5524852	chrX	5528704	5528724	412	11	3906	13.5	0.0	6.8	1.4	3929	chrX	5524795	intergenic	snoRNA:Psi28S-3342 -	chrX	5526760	intergenic	not near genes	chrX	5528724	intergenic	Vsx2 -	chrX_11_5525001	chrX_5525001	RAL-223
3555	chrX	5727373	5727416	chrX	5732162	5732197	Doc	19	4788	10.5	8.5	9.5	1.8	4824	chrX	5727373	intron	CG32758 -	chrX	5729785	intron	CG32758 -	chrX	5732197	intron	CG32758 -	chrX_19_5725001	chrX_5725001	RAL-223
3556	chrX	5883764	5883835	chrX	5884055	5884126	pogo	20	291	4.0	8.0	6.0	2.9	362	chrX	5883764	intron	CR45668 -	chrX	5883945	intron	CR45668 -	chrX	5884126	intron	CR45668 -	chrX_20_5880001	chrX_5880001	RAL-223
3557	chrX	5884124	5884186	chrX	5884415	5884477	pogo	21	289	12.0	11.0	11.5	1.7	353	chrX	5884124	intron	CR45668 -	chrX	5884300	intron	CR45668 -	chrX	5884477	intron	CR45668 -	chrX_21_5880001	chrX_5880001	RAL-223
3563	chrX	6171545	6171605	chrX	6179028	6179088	Quasimodo	11	7482	7.0	5.5	6.2	1.5	7543	chrX	6171545	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179088	intron	Ca-alpha1T -	chrX_11_6175001	chrX_6175001	RAL-223
3569	chrX	6335213	6335238	chrX	6337773	6337777	Tirant	10	2558	0.0	14.0	7.0	1.2	2564	chrX	6335213	intergenic	not near genes	chrX	6336495	intergenic	not near genes	chrX	6337777	5` UTR	CG3842 +	chrX_10_6335001	chrX_6335001	RAL-223
3570	chrX	6335239	6335241	chrX	6337748	6337800	Tirant	4	2547	0.0	9.5	4.8	0.7	2561	chrX	6335239	intergenic	not near genes	chrX	6336520	intergenic	not near genes	chrX	6337800	5` UTR	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-223
3574	chrX	6392842	6392902	chrX	6397641	6397713	Doc	17	4814	3.0	5.5	4.2	3.3	4871	chrX	6392842	intergenic	not near genes	chrX	6395278	intergenic	not near genes	chrX	6397713	intergenic	not near genes	chrX_17_6395001	chrX_6395001	RAL-223
3575	chrX	6445263	6445329	chrX	6451071	6451137	297	8	5808	6.5	7.5	7.0	1.0	5874	chrX	6445263	intron	CG42340 -	chrX	6448200	intron	CG42340 -	chrX	6451137	intron	CG42340 -	chrX_8_6445001	chrX_6445001	RAL-223
3577	chrX	6562781	6562842	chrX	6571305	6571374	Tirant	22	8529	4.0	8.5	6.2	3.1	8593	chrX	6562781	intron	CG34417 +	chrX	6567078	intron	CG34417 +	chrX	6571374	intron	CG34417 +	chrX_22_6565001	chrX_6565001	RAL-223
3578	chrX	6605452	6605497	chrX	6608524	6608569	Burdock	10	3072	4.5	12.5	8.5	1.1	3117	chrX	6605452	intron	pigs +	chrX	6607010	intron	pigs +	chrX	6608569	intron	pigs +	chrX_10_6605001	chrX_6605001	RAL-223
3592	chrX	7023561	7023625	chrX	7031001	7031065	Tabor	25	7439	9.0	7.0	8.0	2.8	7504	chrX	7023561	intron	CG12541 -	chrX	7027313	intron	CG12541 -	chrX	7031065	intron	CG12541 -	chrX_25_7025001	chrX_7025001	RAL-223
3595	chrX	7125220	7125267	chrX	7134414	7134476	roo	14	9208	0.0	8.5	4.2	2.7	9256	chrX	7125220	intergenic	not near genes	chrX	7129848	intergenic	not near genes	chrX	7134476	intergenic	not near genes	chrX_14_7125001	chrX_7125001	RAL-223
3600	chrX	7702868	7702923	chrX	7703357	7703412	jockey	27	489	8.0	9.5	8.8	2.8	544	chrX	7702868	intron	CHES-1-like -	chrX	7703140	intron	CHES-1-like -	chrX	7703412	intron	CHES-1-like -	chrX_27_7700001	chrX_7700001	RAL-223
3607	chrX	8031376	8031451	chrX	8035730	8035810	Juan	24	4358	5.0	7.5	6.2	3.3	4434	chrX	8031376	intergenic	not near genes	chrX	8033593	intergenic	not near genes	chrX	8035810	3` UTR	CG2233 -	chrX_24_8030001	chrX_8030001	RAL-223
3614	chrX	8364804	8364874	chrX	8365241	8365321	BS	11	446	5.5	6.0	5.8	1.6	517	chrX	8364804	intron	nAChRalpha3 -	chrX	8365062	intron	nAChRalpha3 -	chrX	8365321	intron	nAChRalpha3 -	chrX_11_8365001	chrX_8365001	RAL-223
3635	chrX	8922283	8922357	chrX	8922767	8922834	jockey	27	483	8.0	8.0	8.0	3.0	551	chrX	8922283	intron	rdgA +	chrX	8922558	intron	rdgA +	chrX	8922834	intron	rdgA +	chrX_27_8920001	chrX_8920001	RAL-223
3636	chrX	8948713	8948789	chrX	8956273	8956349	roo	35	7560	4.0	11.0	7.5	4.1	7636	chrX	8948713	intron	rdgA +	chrX	8952531	intron	rdgA +	chrX	8956349	intron	rdgA +	chrX_35_8950001	chrX_8950001	RAL-223
3648	chrX	9508095	9508131	chrX	9509663	9509699	jockey	15	1568	11.0	7.5	9.2	1.5	1604	chrX	9508095	intron	CG32700 -	chrX	9508897	intron	CG32700 -	chrX	9509699	intron	CG32700 -	chrX_15_9505001	chrX_9505001	RAL-223
3649	chrX	9508135	9508157	chrX	9509653	9509725	jockey	10	1563	9.5	7.0	8.2	1.1	1590	chrX	9508135	intron	CG32700 -	chrX	9508930	intron	CG32700 -	chrX	9509725	intron	CG32700 -	chrX_10_9505001	chrX_9505001	RAL-223
3651	chrX	9575746	9575815	chrX	9576119	9576189	mdg3	26	372	7.0	6.0	6.5	3.5	443	chrX	9575746	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576189	intron,5` UTR	CG32699 -,CG42395 -	chrX_26_9575001	chrX_9575001	RAL-223
3664	chrX	10138193	10138243	chrX	10145747	10145797	412	14	7554	7.5	7.0	7.2	1.7	7604	chrX	10138193	intron,intron	RhoU +,CR44894 -	chrX	10141995	intron,intron	RhoU +,CR44894 -	chrX	10145797	intron,intron	RhoU +,CR44894 -	chrX_14_10140001	chrX_10140001	RAL-223
3672	chrX	10348755	10348814	chrX	10356370	10356429	springer	13	7615	8.5	4.5	6.5	1.7	7674	chrX	10348755	intergenic	snoRNA:U3:9B +	chrX	10352592	intergenic	not near genes	chrX	10356429	intergenic	l(1)G0289 -	chrX_13_10350001	chrX_10350001	RAL-223
3675	chrX	10525025	10525047	chrX	10532144	10532166	297	9	7119	13.0	4.0	8.5	0.9	7141	chrX	10525025	intron	spri -	chrX	10528596	intron	spri -	chrX	10532166	intron	spri -	chrX_9_10525001	chrX_10525001	RAL-223
3677	chrX	10550815	10550882	chrX	10552332	10552389	hobo	23	1516	7.0	11.0	9.0	2.3	1574	chrX	10550815	intron	spri -	chrX	10551602	intron	spri -	chrX	10552389	intron	spri -	chrX_23_10550001	chrX_10550001	RAL-223
3678	chrX	10686006	10686074	chrX	10691193	10691240	roo	19	5186	10.5	1.0	5.8	2.8	5234	chrX	10686006	intron	X11Lbeta +	chrX	10688623	intron	X11Lbeta +	chrX	10691240	intron	X11Lbeta +	chrX_19_10685001	chrX_10685001	RAL-223
3681	chrX	10772644	10772695	chrX	10772766	10772828	Tirant	19	130	6.5	9.5	8.0	2.1	184	chrX	10772644	intron	CG15211 +	chrX	10772736	intron	CG15211 +	chrX	10772828	intron	CG15211 +	chrX_19_10770001	chrX_10770001	RAL-223
3686	chrX	11095958	11096020	chrX	11103110	11103172	HMS-Beagle	19	7152	7.5	9.5	8.5	2.0	7214	chrX	11095958	intergenic	not near genes	chrX	11099565	intergenic	not near genes	chrX	11103172	intron	CG42249 +	chrX_19_11095001	chrX_11095001	RAL-223
3687	chrX	11184207	11184272	chrX	11189333	11189398	flea	19	5126	8.0	5.5	6.8	2.4	5191	chrX	11184207	intergenic	not near genes	chrX	11186802	intergenic	not near genes	chrX	11189398	intergenic	not near genes	chrX_19_11185001	chrX_11185001	RAL-223
3691	chrX	11312016	11312081	chrX	11319419	11319463	Stalker2	24	7400	8.0	7.0	7.5	2.8	7447	chrX	11312016	intergenic	not near genes	chrX	11315740	intergenic	not near genes	chrX	11319463	intergenic	not near genes	chrX_24_11315001	chrX_11315001	RAL-223
3694	chrX	11535002	11535046	chrX	11541516	11541566	Burdock	15	6520	11.0	8.0	9.5	1.4	6564	chrX	11535002	intron	Drak +	chrX	11538284	intron	Drak +	chrX	11541566	intron	Drak +	chrX_15_11535001	chrX_11535001	RAL-223
3696	chrX	11633370	11633441	chrX	11640474	11640545	297	24	7104	6.5	4.0	5.2	3.9	7175	chrX	11633370	intron	Ptp10D +	chrX	11636958	intron	Ptp10D +	chrX	11640545	intron	Ptp10D +	chrX_24_11635001	chrX_11635001	RAL-223
3697	chrX	11645070	11645130	chrX	11648290	11648350	NOF	10	3220	6.0	4.5	5.2	1.6	3280	chrX	11645070	intron	Ptp10D +	chrX	11646710	intron	Ptp10D +	chrX	11648350	intron	Ptp10D +	chrX_10_11645001	chrX_11645001	RAL-223
3705	chrX	12168097	12168135	chrX	12173589	12173622	I-element	9	5491	8.5	2.0	5.2	1.5	5525	chrX	12168097	intron	Ten-a +	chrX	12170860	intron	Ten-a +	chrX	12173622	intron	Ten-a +	chrX_9_12170001	chrX_12170001	RAL-223
3713	chrX	12381808	12381854	chrX	12385771	12385817	flea	11	3963	4.0	8.0	6.0	1.6	4009	chrX	12381808	intergenic	not near genes	chrX	12383812	intergenic	not near genes	chrX	12385817	intergenic	not near genes	chrX_11_12380001	chrX_12380001	RAL-223
3724	chrX	12930546	12930599	chrX	12937712	12937765	HMS-Beagle	19	7166	6.5	10.5	8.5	2.0	7219	chrX	12930546	intron	fne +	chrX	12934156	intron	fne +	chrX	12937765	intron	fne +	chrX_19_12930001	chrX_12930001	RAL-223
3737	chrX	13401438	13401447	chrX	13401840	13401849	jockey	4	402	6.5	6.0	6.2	0.6	411	chrX	13401438	intergenic	CG1673 +,CG12725 -	chrX	13401644	intergenic	CG12725 -,CG1673 +	chrX	13401849	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	RAL-223
3738	chrX	13401451	13401464	chrX	13401836	13401866	jockey	4	398	6.5	4.5	5.5	0.6	415	chrX	13401451	intergenic	CG1673 +,CG12725 -	chrX	13401658	intergenic	CG12725 -,CG1673 +	chrX	13401866	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	RAL-223
3739	chrX	13429426	13429481	chrX	13430625	13430680	jockey	19	1199	11.5	13.0	12.2	1.4	1254	chrX	13429426	intergenic	not near genes	chrX	13430053	intergenic	not near genes	chrX	13430680	intergenic	not near genes	chrX_19_13430001	chrX_13430001	RAL-223
3740	chrX	13463601	13463670	chrX	13469228	13469296	mdg3	34	5627	6.0	4.0	5.0	5.7	5695	chrX	13463601	intron	Neto +	chrX	13466448	intron	Neto +	chrX	13469296	intron	Neto +	chrX_34_13465001	chrX_13465001	RAL-223
3749	chrX	13937930	13938008	chrX	13941251	13941329	I-element	18	3321	4.5	5.0	4.8	3.1	3399	chrX	13937930	intron	mamo -	chrX	13939630	intron	mamo -	chrX	13941329	intron	mamo -	chrX_18_13935001	chrX_13935001	RAL-223
3752	chrX	14030707	14030776	chrX	14035343	14035413	copia	7	4636	4.5	5.5	5.0	1.2	4706	chrX	14030707	intergenic	not near genes	chrX	14033060	intergenic	not near genes	chrX	14035413	intergenic	not near genes	chrX_7_14030001	chrX_14030001	RAL-223
3753	chrX	14104986	14105043	chrX	14114171	14114234	roo	10	9198	8.5	7.0	7.8	1.1	9248	chrX	14104986	intergenic	not near genes	chrX	14109610	intergenic	not near genes	chrX	14114234	5` UTR	CR44657 +	chrX_10_14105001	chrX_14105001	RAL-223
3755	chrX	14157543	14157618	chrX	14163250	14163325	297	11	5703	6.5	4.5	5.5	1.7	5782	chrX	14157543	intergenic	not near genes	chrX	14160434	intergenic	not near genes	chrX	14163325	intergenic	not near genes	chrX_11_14160001	chrX_14160001	RAL-223
3765	chrX	14416271	14416314	chrX	14421089	14421132	F-element	8	4818	7.0	8.0	7.5	0.9	4861	chrX	14416271	intron	dpr8 +	chrX	14418702	intron	dpr8 +	chrX	14421132	intron	dpr8 +	chrX_8_14415001	chrX_14415001	RAL-223
3768	chrX	14636419	14636475	chrX	14641910	14641966	I-element	25	5490	12.5	11.0	11.8	2.0	5547	chrX	14636419	intron	NetA -	chrX	14639192	intron	NetA -	chrX	14641966	intron	NetA -	chrX_25_14635001	chrX_14635001	RAL-223
3771	chrX	14777995	14778048	chrX	14782842	14782894	Doc	19	4847	12.5	7.5	10.0	1.7	4899	chrX	14777995	intergenic	CG5347 +	chrX	14780444	intergenic	not near genes	chrX	14782894	intergenic	Ag5r2 -	chrX_19_14780001	chrX_14780001	RAL-223
3772	chrX	14818729	14818792	chrX	14823968	14824042	copia	24	5250	6.5	8.5	7.5	2.8	5313	chrX	14818729	intron	rut -	chrX	14821386	intron	rut -	chrX	14824042	intron	rut -	chrX_24_14820001	chrX_14820001	RAL-223
3773	chrX	14936818	14936881	chrX	14946125	14946188	roo	24	9307	9.5	14.5	12.0	1.8	9370	chrX	14936818	intron	pdgy -	chrX	14941503	intron	pdgy -	chrX	14946188	intron	pdgy -	chrX_24_14940001	chrX_14940001	RAL-223
3779	chrX	15034061	15034077	chrX	15041644	15041660	rover	5	7583	10.5	14.0	12.2	0.4	7599	chrX	15034061	intron,3` UTR	hiw -,be +	chrX	15037860	intron,intron	hiw -,be +	chrX	15041660	intron,3` UTR	hiw -,be +	chrX_5_15035001	chrX_15035001	RAL-223
3788	chrX	15273665	15273724	chrX	15274882	15274924	1360	23	1211	10.5	6.0	8.2	2.5	1259	chrX	15273665	intergenic	not near genes	chrX	15274294	intergenic	not near genes	chrX	15274924	intergenic	not near genes	chrX_23_15270001	chrX_15270001	RAL-223
3790	chrX	15326688	15326715	chrX	15326936	15326963	I-element	4	248	0.0	6.0	3.0	1.0	275	chrX	15326688	3` UTR	Top1 +	chrX	15326826	3` UTR	Top1 +	chrX	15326963	3` UTR	Top1 +	chrX_4_15325001	chrX_15325001	RAL-223
3792	chrX	15413009	15413078	chrX	15417361	15417430	Juan	22	4350	7.0	4.5	5.8	3.2	4421	chrX	15413009	intron	Cngl -	chrX	15415220	intron	Cngl -	chrX	15417430	intron	Cngl -	chrX_22_15415001	chrX_15415001	RAL-223
3793	chrX	15435690	15435693	chrX	15436164	15436176	rover	4	480	0.0	15.0	7.5	0.5	486	chrX	15435690	intron	Cngl -	chrX	15435933	intron	Cngl -	chrX	15436176	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-223
3805	chrX	16222743	16222798	chrX	16231143	16231198	roo	15	8400	1.0	6.5	3.8	3.1	8455	chrX	16222743	intergenic	not near genes	chrX	16226970	intergenic	not near genes	chrX	16231198	intergenic	not near genes	chrX_15_16225001	chrX_16225001	RAL-223
3808	chrX	16340629	16340680	chrX	16349836	16349887	roo	18	9207	10.0	5.5	7.8	2.0	9258	chrX	16340629	intergenic	Dsp1 +	chrX	16345258	intergenic	not near genes	chrX	16349887	intergenic	sl +	chrX_18_16345001	chrX_16345001	RAL-223
3811	chrX	16492595	16492666	chrX	16498222	16498293	mdg3	23	5626	7.5	3.5	5.5	3.5	5698	chrX	16492595	intron	para -	chrX	16495444	intron	para -	chrX	16498293	exon	para -	chrX_23_16495001	chrX_16495001	RAL-223
3825	chrX	16935952	16936023	chrX	16936420	16936491	jockey	5	468	2.5	4.5	3.5	1.1	539	chrX	16935952	intron	CG4928 +	chrX	16936222	intron	CG4928 +	chrX	16936491	intron	CG4928 +	chrX_5_16935001	chrX_16935001	RAL-223
3829	chrX	17057921	17057963	chrX	17058212	17058254	pogo	9	291	4.0	9.5	6.8	1.2	333	chrX	17057921	intron	CG45002 -	chrX	17058088	intron	CG45002 -	chrX	17058254	intron	CG45002 -	chrX_9_17055001	chrX_17055001	RAL-223
3848	chrX	17431314	17431338	chrX	17431705	17431729	jockey	9	390	13.5	7.5	10.5	0.8	415	chrX	17431314	intron	CG12994 -	chrX	17431522	intron	CG12994 -	chrX	17431729	intron	CG12994 -	chrX_9_17430001	chrX_17430001	RAL-223
3859	chrX	17792924	17792982	chrX	17796270	17796313	flea	18	3345	6.0	8.5	7.2	2.2	3389	chrX	17792924	intron	OdsH +	chrX	17794618	intron	OdsH +	chrX	17796313	intron	OdsH +	chrX_18_17790001	chrX_17790001	RAL-223
3866	chrX	18194025	18194091	chrX	18194610	18194676	BS	23	585	6.5	5.5	6.0	3.3	651	chrX	18194025	intron	Frq2 +	chrX	18194350	intron	Frq2 +	chrX	18194676	intron	Frq2 +	chrX_23_18190001	chrX_18190001	RAL-223
3871	chrX	18429451	18429519	chrX	18434812	18434880	Transpac	16	5360	4.5	9.0	6.8	2.1	5429	chrX	18429451	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434880	intergenic	not near genes	chrX_16_18430001	chrX_18430001	RAL-223
3876	chrX	18555336	18555354	chrX	18556907	18556925	transib2	9	1571	8.5	6.0	7.2	1.1	1589	chrX	18555336	intron	Bx +	chrX	18556130	intron	Bx +	chrX	18556925	intron	Bx +	chrX_9_18555001	chrX_18555001	RAL-223
3877	chrX	18555357	18555403	chrX	18556903	18556975	transib2	15	1565	7.0	5.0	6.0	2.1	1618	chrX	18555357	intron	Bx +	chrX	18556166	intron	Bx +	chrX	18556975	intron	Bx +	chrX_15_18555001	chrX_18555001	RAL-223
3880	chrX	18754285	18754343	chrX	18758002	18758060	297	17	3717	8.5	8.0	8.2	1.8	3775	chrX	18754285	intergenic	not near genes	chrX	18756172	intergenic	not near genes	chrX	18758060	intergenic	not near genes	chrX_17_18755001	chrX_18755001	RAL-223
3883	chrX	18957024	18957044	chrX	18965730	18965750	roo	5	8706	5.5	0.5	3.0	1.2	8726	chrX	18957024	intron	CG43759 +	chrX	18961387	intron	CG43759 +	chrX	18965750	intron	CG43759 +	chrX_5_18960001	chrX_18960001	RAL-223
3885	chrX	19060366	19060427	chrX	19065200	19065261	Doc	21	4834	9.0	9.0	9.0	2.1	4895	chrX	19060366	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065261	intron	CG14190 +	chrX_21_19060001	chrX_19060001	RAL-223
3892	chrX	19136515	19136567	chrX	19143485	19143537	412	15	6969	4.5	10.5	7.5	1.8	7022	chrX	19136515	intergenic	not near genes	chrX	19140026	intergenic	not near genes	chrX	19143537	3` UTR	RhoGAP18B -	chrX_15_19140001	chrX_19140001	RAL-223
3899	chrX	19356950	19357022	chrX	19358441	19358531	NOF	20	1502	4.5	0.0	2.2	6.2	1581	chrX	19356950	intron	kek5 +	chrX	19357740	intron	kek5 +	chrX	19358531	intron	kek5 +	chrX_20_19355001	chrX_19355001	RAL-223
3900	chrX	19380112	19380176	chrX	19380403	19380467	pogo	19	291	9.5	7.5	8.5	2.0	355	chrX	19380112	intron	kek5 +	chrX	19380290	intron	kek5 +	chrX	19380467	intron	kek5 +	chrX_19_19380001	chrX_19380001	RAL-223
3902	chrX	19437233	19437280	chrX	19444802	19444849	Idefix	4	7566	6.0	3.5	4.8	0.7	7616	chrX	19437233	intron	kek5 +	chrX	19441041	intron	kek5 +	chrX	19444849	intron	kek5 +	chrX_4_19440001	chrX_19440001	RAL-223
3905	chrX	19472041	19472148	chrX	19472690	19472768	jockey	30	623	0.0	10.0	5.0	5.0	727	chrX	19472041	intergenic	kek5 +	chrX	19472404	intergenic	kek5 +	chrX	19472768	intergenic	not near genes	chrX_30_19470001	chrX_19470001	RAL-223
3915	chrX	19710024	19710093	chrX	19711860	19711929	S-element	26	1836	6.5	8.0	7.2	3.2	1905	chrX	19710024	intron	meso18E -	chrX	19710976	intron	meso18E -	chrX	19711929	intron	meso18E -	chrX_26_19710001	chrX_19710001	RAL-223
3920	chrX	19797305	19797339	chrX	19804668	19804702	Stalker4	9	7363	7.0	7.0	7.0	1.1	7397	chrX	19797305	intergenic	not near genes	chrX	19801004	intergenic	not near genes	chrX	19804702	intergenic	not near genes	chrX_9_19800001	chrX_19800001	RAL-223
3933	chrX	20144444	20144453	chrX	21085289	21085298	INE-1	6	940845	6.0	27.5	16.8	0.3	940854	chrX	20144444	intergenic	not near genes	chrX	20614871	intron	RunxA -	chrX	21085298	intergenic	not near genes	chrX_6_20610001	chrX_20610001	RAL-223
3940	chrX	20377277	20377342	chrX	20378794	20378829	hobo	8	1512	6.0	8.0	7.0	1.0	1552	chrX	20377277	intergenic	not near genes	chrX	20378053	intergenic	not near genes	chrX	20378829	intergenic	not near genes	chrX_8_20375001	chrX_20375001	RAL-223
3963	chrX	20836678	20836756	chrX	20844326	20844392	roo	7	7649	4.0	0.0	2.0	2.3	7714	chrX	20836678	intron	shakB -	chrX	20840535	intron	shakB -	chrX	20844392	intron	shakB -	chrX_7_20840001	chrX_20840001	RAL-223
3965	chrX	20940677	20940689	chrX	20942196	20942208	hobo	7	1519	14.5	4.5	9.5	0.7	1531	chrX	20940677	intergenic	not near genes	chrX	20941442	intergenic	not near genes	chrX	20942208	intergenic	not near genes	chrX_7_20940001	chrX_20940001	RAL-223
3966	chrX	20940695	20940728	chrX	20942194	20942234	hobo	13	1516	7.5	4.0	5.8	1.9	1539	chrX	20940695	intergenic	not near genes	chrX	20941464	intergenic	not near genes	chrX	20942234	intergenic	not near genes	chrX_13_20940001	chrX_20940001	RAL-223
3967	chrX	20956951	20957008	chrX	20962443	20962500	I-element	11	5492	1.0	3.0	2.0	3.7	5549	chrX	20956951	intergenic	not near genes	chrX	20959726	intergenic	not near genes	chrX	20962500	intergenic	Ser6 -	chrX_11_20955001	chrX_20955001	RAL-223
3973	chrX	21061810	21061891	chrX	21062349	21062425	roo	16	536	3.5	3.5	3.5	3.6	615	chrX	21061810	intron	bves +	chrX	21062118	intron	bves +	chrX	21062425	intron,3` UTR	bves +,CG32512 -	chrX_16_21060001	chrX_21060001	RAL-223
3979	chrX	21086083	21086158	chrX	21087159	21087209	jockey	8	1054	3.0	1.0	2.0	2.7	1126	chrX	21086083	intergenic	not near genes	chrX	21086646	intergenic	not near genes	chrX	21087209	intergenic	not near genes	chrX_8_21085001	chrX_21085001	RAL-223
3990	chrX	21429822	21429834	chrX	21429962	21429974	INE-1	6	140	0.5	12.0	6.2	0.8	152	chrX	21429822	intron	CG42343 -	chrX	21429898	intron	CG42343 -	chrX	21429974	intron	CG42343 -	chrX_6_21425001	chrX_21425001	RAL-223
3994	chrX	21458652	21458715	chrX	21464138	21464201	Ivk	22	5486	7.5	8.0	7.8	2.5	5549	chrX	21458652	intergenic	not near genes	chrX	21461426	intergenic	not near genes	chrX	21464201	intergenic	not near genes	chrX_22_21460001	chrX_21460001	RAL-223
3998	chrX	21595533	21595558	chrX	21598656	21598676	micropia	10	3122	7.5	9.5	8.5	1.1	3143	chrX	21595533	intergenic	not near genes	chrX	21597104	intergenic	not near genes	chrX	21598676	intergenic	not near genes	chrX_10_21595001	chrX_21595001	RAL-223
4001	chrX	22522585	22522646	chrX	22525454	22525516	NOF	23	2870	10.5	9.5	10.0	2.1	2931	chrX	22522585	intron	CG17600 +	chrX	22524050	intron	CG17600 +	chrX	22525516	intron	CG17600 +	chrX_23_22520001	chrX_22520001	RAL-223
4003	chrX	22620452	22620512	chrX	22626770	22626829	297	15	6317	5.5	7.0	6.2	2.1	6377	chrX	22620452	intron	Cda4 -	chrX	22623640	intron	Cda4 -	chrX	22626829	intron	Cda4 -	chrX_15_22620001	chrX_22620001	RAL-223
4007	chrX	22771462	22771525	chrX	22774803	22774866	297	17	3340	8.0	6.5	7.2	2.1	3404	chrX	22771462	intron	CR44997 +	chrX	22773164	intron	CR44997 +	chrX	22774866	intron	CR44997 +	chrX_17_22770001	chrX_22770001	RAL-223
4010	chrX	22811961	22812005	chrX	22816783	22816827	F-element	13	4822	11.0	5.5	8.2	1.4	4866	chrX	22811961	intergenic	CG12446 -	chrX	22814394	intergenic	not near genes	chrX	22816827	intergenic	not near genes	chrX_13_22810001	chrX_22810001	RAL-223
4014	chrX	22967343	22967382	chrX	23154544	23154583	diver	7	187199	16.5	29.0	22.8	0.3	187240	chrX	22967343	intergenic	not near genes	chrX	23060963	intergenic	not near genes	chrX	23154583	intergenic	not near genes	chrX_7_23060001	chrX_23060001	RAL-223
4015	chrX	22987075	22987124	chrX	22989784	22989833	Burdock	12	2708	6.5	10.0	8.2	1.3	2758	chrX	22987075	intron,intron	stnA -,stnB -	chrX	22988454	intron,intron	stnA -,stnB -	chrX	22989833	intron,intron	stnA -,stnB -	chrX_12_22985001	chrX_22985001	RAL-223
4016	chrX	22996267	22996332	chrX	23003551	23003613	roo	24	7282	5.5	9.0	7.2	2.9	7346	chrX	22996267	intron,intron	stnA -,stnB -	chrX	22999940	intron,intron	stnA -,stnB -	chrX	23003613	intron,intron	stnA -,stnB -	chrX_24_22995001	chrX_22995001	RAL-223