SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 25370 25388 chr2L 25729 25747 14 354 39.0 40.5 39.8 0.3 377 chr2L 25370 intergenic Cda5 -,Ir21a - chr2L 25558 3` UTR Cda5 - chr2L 25747 3` UTR Cda5 - chr2L_14_25001 chr2L_25001 RAL-223 2 chr2L 46311 46374 chr2L 46429 46502 19 127 10.0 9.5 9.8 1.8 191 chr2L 46311 intron Cda5 - chr2L 46406 intron Cda5 - chr2L 46502 intron Cda5 - chr2L_19_45001 chr2L_45001 RAL-223 3 chr2L 47423 47473 chr2L 52578 52628 jockey 35 5155 18.0 11.5 14.8 2.2 5205 chr2L 47423 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52628 intron Cda5 - chr2L_35_50001 chr2L_50001 RAL-223 4 chr2L 171986 172049 chr2L 172146 172209 27 160 6.5 11.5 9.0 2.7 223 chr2L 171986 intron spen + chr2L 172098 intron spen + chr2L 172209 intron spen + chr2L_27_170001 chr2L_170001 RAL-223 5 chr2L 263275 263315 chr2L 263471 263511 24 196 2.5 14.5 8.5 2.5 236 chr2L 263275 intron,3` UTR CG3645 -,CG17075 - chr2L 263393 intron,3` UTR CG3645 -,CG17075 - chr2L 263511 intron,3` UTR CG3645 -,CG17075 - chr2L_24_260001 chr2L_260001 RAL-223 6 chr2L 297636 297715 chr2L 297786 297831 27 148 7.0 5.0 6.0 3.9 195 chr2L 297636 intergenic Hop +,Pi3K21B + chr2L 297734 intergenic Pi3K21B +,Hop + chr2L 297831 intergenic Pi3K21B +,Hop + chr2L_27_295001 chr2L_295001 RAL-223 7 chr2L 314089 314145 chr2L 314216 314271 21 126 10.0 10.5 10.2 1.9 182 chr2L 314089 intron Plc21C + chr2L 314180 intron Plc21C + chr2L 314271 intron Plc21C + chr2L_21_310001 chr2L_310001 RAL-223 8 chr2L 323406 323481 chr2L 323534 323609 35 126 8.5 8.5 8.5 3.7 203 chr2L 323406 intron Plc21C + chr2L 323508 intron Plc21C + chr2L 323609 intron Plc21C + chr2L_35_320001 chr2L_320001 RAL-223 9 chr2L 325104 325148 chr2L 325216 325248 17 121 10.0 9.5 9.8 1.6 144 chr2L 325104 intron Plc21C + chr2L 325176 intron Plc21C + chr2L 325248 intron Plc21C + chr2L_17_325001 chr2L_325001 RAL-223 10 chr2L 347841 347918 chr2L 355391 355468 blood 24 7550 7.0 6.5 6.8 3.1 7627 chr2L 347841 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355468 3` UTR Plc21C + chr2L_24_350001 chr2L_350001 RAL-223 11 chr2L 371392 371453 chr2L 371521 371582 15 129 8.0 9.0 8.5 1.6 190 chr2L 371392 intergenic not near genes chr2L 371487 intergenic not near genes chr2L 371582 intergenic not near genes chr2L_15_370001 chr2L_370001 RAL-223 12 chr2L 407900 407971 chr2L 408031 408102 21 131 6.0 6.5 6.2 2.9 202 chr2L 407900 3` UTR RpI135 + chr2L 408001 intergenic AP-2alpha -,RpI135 + chr2L 408102 3` UTR AP-2alpha - chr2L_21_405001 chr2L_405001 RAL-223 13 chr2L 458850 458915 chr2L 458977 459042 25 127 6.0 9.5 7.8 2.8 192 chr2L 458850 intergenic CG4297 -,CG4133 + chr2L 458946 3` UTR CG4297 - chr2L 459042 3` UTR CG4297 - chr2L_25_455001 chr2L_455001 RAL-223 14 chr2L 686915 686940 chr2L 696005 696030 roo 10 9090 6.5 15.5 11.0 0.8 9115 chr2L 686915 intron ds - chr2L 691472 intron ds - chr2L 696030 intron ds - chr2L_10_690001 chr2L_690001 RAL-223 15 chr2L 746549 746563 chr2L 746665 746689 8 125 13.5 13.5 13.5 0.6 140 chr2L 746549 intergenic not near genes chr2L 746619 intergenic not near genes chr2L 746689 intergenic not near genes chr2L_8_745001 chr2L_745001 RAL-223 16 chr2L 763550 763618 chr2L 763676 763744 26 124 7.0 11.0 9.0 2.6 194 chr2L 763550 intergenic not near genes chr2L 763647 intergenic not near genes chr2L 763744 intergenic not near genes chr2L_26_760001 chr2L_760001 RAL-223 17 chr2L 770419 770485 chr2L 772250 772316 Bari1 26 1828 13.0 9.5 11.2 2.1 1897 chr2L 770419 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772316 intergenic CR44614 + chr2L_26_770001 chr2L_770001 RAL-223 18 chr2L 806726 806739 chr2L 807051 807064 6 323 22.5 12.5 17.5 0.3 338 chr2L 806726 intergenic not near genes chr2L 806895 intergenic not near genes chr2L 807064 intergenic not near genes chr2L_6_805001 chr2L_805001 RAL-223 19 chr2L 806740 806768 chr2L 807043 807080 18 320 14.5 9.5 12.0 1.4 340 chr2L 806740 intergenic not near genes chr2L 806910 intergenic not near genes chr2L 807080 intergenic not near genes chr2L_18_805001 chr2L_805001 RAL-223 20 chr2L 837481 837556 chr2L 837709 837780 33 228 11.0 9.0 10.0 3.0 299 chr2L 837481 intron drongo - chr2L 837630 intron drongo - chr2L 837780 intron drongo - chr2L_33_835001 chr2L_835001 RAL-223 21 chr2L 877799 877872 chr2L 877930 878003 29 130 7.0 8.5 7.8 3.3 204 chr2L 877799 3` UTR,exon CG15824 -,ninaA + chr2L 877901 3` UTR,intron CG15824 -,ninaA + chr2L 878003 3` UTR,exon CG15824 -,ninaA + chr2L_29_875001 chr2L_875001 RAL-223 22 chr2L 890321 890340 chr2L 890452 890471 13 131 8.0 8.0 8.0 1.4 150 chr2L 890321 intergenic not near genes chr2L 890396 intergenic not near genes chr2L 890471 intergenic not near genes chr2L_13_890001 chr2L_890001 RAL-223 23 chr2L 922416 922491 chr2L 922547 922601 27 130 4.5 7.5 6.0 3.9 185 chr2L 922416 intergenic CG4341 + chr2L 922508 intergenic CG4341 + chr2L 922601 intergenic CG4341 + chr2L_27_920001 chr2L_920001 RAL-223 24 chr2L 924542 924625 chr2L 924866 924946 31 321 8.5 1.5 5.0 5.2 404 chr2L 924542 intron CG4341 + chr2L 924744 intron CG4341 + chr2L 924946 intron CG4341 + chr2L_31_920001 chr2L_920001 RAL-223 25 chr2L 931592 931666 chr2L 931718 931795 21 128 6.0 10.5 8.2 2.3 203 chr2L 931592 intron CG4341 + chr2L 931694 intron CG4341 + chr2L 931795 intron CG4341 + chr2L_21_930001 chr2L_930001 RAL-223 26 chr2L 936491 936522 chr2L 936669 936700 10 178 13.0 0.0 6.5 1.3 209 chr2L 936491 intron CG4341 + chr2L 936596 intron CG4341 + chr2L 936700 intron CG4341 + chr2L_10_935001 chr2L_935001 RAL-223 27 chr2L 938410 938455 chr2L 938611 938656 20 201 6.5 17.5 12.0 1.5 246 chr2L 938410 intron CG4341 + chr2L 938533 intron CG4341 + chr2L 938656 intron CG4341 + chr2L_20_935001 chr2L_935001 RAL-223 28 chr2L 964506 964574 chr2L 964640 964708 20 133 10.0 7.0 8.5 2.1 202 chr2L 964506 intergenic not near genes chr2L 964607 intergenic not near genes chr2L 964708 intergenic not near genes chr2L_20_960001 chr2L_960001 RAL-223 29 chr2L 971867 971937 chr2L 972008 972062 29 138 9.5 6.0 7.8 3.3 195 chr2L 971867 intergenic not near genes chr2L 971964 intergenic not near genes chr2L 972062 intergenic not near genes chr2L_29_970001 chr2L_970001 RAL-223 30 chr2L 976833 976911 chr2L 984519 984597 roo 25 7686 6.5 7.5 7.0 3.1 7764 chr2L 976833 intergenic not near genes chr2L 980715 intergenic not near genes chr2L 984597 intergenic not near genes chr2L_25_980001 chr2L_980001 RAL-223 31 chr2L 996684 996709 chr2L 1005829 1005854 roo 10 9145 3.5 4.0 3.8 2.1 9170 chr2L 996684 intergenic not near genes chr2L 1001269 intergenic not near genes chr2L 1005854 intergenic not near genes chr2L_10_1000001 chr2L_1000001 RAL-223 32 chr2L 1022964 1023034 chr2L 1023094 1023164 24 129 6.5 10.5 8.5 2.5 200 chr2L 1022964 intron IA-2 - chr2L 1023064 intron IA-2 - chr2L 1023164 intron IA-2 - chr2L_24_1020001 chr2L_1020001 RAL-223 33 chr2L 1026148 1026179 chr2L 1026274 1026305 14 126 11.0 0.5 5.8 2.1 157 chr2L 1026148 intron,3` UTR IA-2 -,CG4375 - chr2L 1026226 intron,3` UTR IA-2 -,CG4375 - chr2L 1026305 intron,exon IA-2 -,CG4375 - chr2L_14_1025001 chr2L_1025001 RAL-223 34 chr2L 1028797 1028822 chr2L 1028947 1028972 13 146 17.5 4.0 10.8 1.1 175 chr2L 1028797 intron IA-2 - chr2L 1028884 intron IA-2 - chr2L 1028972 intron IA-2 - chr2L_13_1025001 chr2L_1025001 RAL-223 35 chr2L 1028825 1028840 chr2L 1028944 1028970 4 136 13.5 3.0 8.2 0.4 145 chr2L 1028825 intron IA-2 - chr2L 1028898 intron IA-2 - chr2L 1028970 intron IA-2 - chr2L_4_1025001 chr2L_1025001 RAL-223 36 chr2L 1028845 1028871 chr2L 1028940 1029009 8 130 5.0 3.0 4.0 1.6 164 chr2L 1028845 intron IA-2 - chr2L 1028927 intron IA-2 - chr2L 1029009 intron IA-2 - chr2L_8_1025001 chr2L_1025001 RAL-223 37 chr2L 1042575 1042582 chr2L 1042702 1042709 6 127 2.5 0.0 1.2 2.7 134 chr2L 1042575 intron IA-2 - chr2L 1042642 intron IA-2 - chr2L 1042709 intron IA-2 - chr2L_6_1040001 chr2L_1040001 RAL-223 38 chr2L 1122301 1122310 chr2L 1122456 1122468 5 155 25.5 6.5 16.0 0.3 167 chr2L 1122301 intron Pino - chr2L 1122384 intron Pino - chr2L 1122468 intron Pino - chr2L_5_1120001 chr2L_1120001 RAL-223 39 chr2L 1122313 1122370 chr2L 1122454 1122503 19 155 8.0 6.0 7.0 2.4 190 chr2L 1122313 intron Pino - chr2L 1122408 intron Pino - chr2L 1122503 intron Pino - chr2L_19_1120001 chr2L_1120001 RAL-223 40 chr2L 1156818 1156893 chr2L 1156973 1157030 27 153 7.5 4.5 6.0 3.9 212 chr2L 1156818 intron capt - chr2L 1156924 intron capt - chr2L 1157030 intron capt - chr2L_27_1155001 chr2L_1155001 RAL-223 41 chr2L 1199821 1199858 chr2L 1199979 1200016 4 158 2.0 11.5 6.8 0.5 195 chr2L 1199821 3` UTR CG43348 + chr2L 1199918 3` UTR CG43348 + chr2L 1200016 intergenic CG43348 +,CG43349 + chr2L_4_1195001 chr2L_1195001 RAL-223 42 chr2L 1220089 1220151 chr2L 1227605 1227667 blood 25 7516 9.5 8.5 9.0 2.5 7578 chr2L 1220089 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227667 intron CG42329 + chr2L_25_1220001 chr2L_1220001 RAL-223 43 chr2L 1250911 1250958 chr2L 1251041 1251088 17 129 4.5 7.5 6.0 2.4 177 chr2L 1250911 intergenic not near genes chr2L 1251000 intergenic not near genes chr2L 1251088 intergenic not near genes chr2L_17_1250001 chr2L_1250001 RAL-223 44 chr2L 1321980 1322048 chr2L 1322119 1322187 24 139 9.0 7.5 8.2 2.6 207 chr2L 1321980 intergenic not near genes chr2L 1322084 intergenic not near genes chr2L 1322187 intergenic not near genes chr2L_24_1320001 chr2L_1320001 RAL-223 45 chr2L 1327060 1327105 chr2L 1327186 1327229 6 121 4.0 18.5 11.2 0.5 169 chr2L 1327060 intergenic not near genes chr2L 1327144 intergenic not near genes chr2L 1327229 intergenic not near genes chr2L_6_1325001 chr2L_1325001 RAL-223 46 chr2L 1332172 1332229 chr2L 1332289 1332348 21 125 10.0 7.5 8.8 2.1 176 chr2L 1332172 intergenic not near genes chr2L 1332260 intergenic not near genes chr2L 1332348 intergenic not near genes chr2L_21_1330001 chr2L_1330001 RAL-223 47 chr2L 1339342 1339379 chr2L 1339493 1339529 8 151 0.0 9.5 4.8 1.4 187 chr2L 1339342 intergenic not near genes chr2L 1339436 intergenic not near genes chr2L 1339529 intergenic not near genes chr2L_8_1335001 chr2L_1335001 RAL-223 48 chr2L 1390327 1390396 chr2L 1390452 1390526 20 129 6.0 2.5 4.2 3.8 199 chr2L 1390327 intron lea - chr2L 1390426 intron lea - chr2L 1390526 intron lea - chr2L_20_1390001 chr2L_1390001 RAL-223 49 chr2L 1442162 1442224 chr2L 1442298 1442360 12 136 5.0 7.0 6.0 1.7 198 chr2L 1442162 intergenic CG43402 + chr2L 1442261 intergenic CG43402 + chr2L 1442360 intergenic CG43402 + chr2L_12_1440001 chr2L_1440001 RAL-223 50 chr2L 1477131 1477204 chr2L 1477497 1477546 23 364 6.0 11.0 8.5 2.4 415 chr2L 1477131 intergenic not near genes chr2L 1477338 intergenic not near genes chr2L 1477546 intergenic not near genes chr2L_23_1475001 chr2L_1475001 RAL-223 51 chr2L 1557098 1557171 chr2L 1557273 1557346 20 175 3.5 1.5 2.5 5.7 248 chr2L 1557098 intron haf + chr2L 1557222 intron haf + chr2L 1557346 intron haf + chr2L_20_1555001 chr2L_1555001 RAL-223 52 chr2L 1570649 1570662 chr2L 1573571 1573584 F-element 7 2922 15.5 11.0 13.2 0.5 2935 chr2L 1570649 intron haf + chr2L 1572116 intron haf + chr2L 1573584 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-223 53 chr2L 1570663 1570714 chr2L 1573570 1573636 F-element 21 2921 9.0 10.5 9.8 1.9 2973 chr2L 1570663 intron haf + chr2L 1572150 intron haf + chr2L 1573636 intron haf + chr2L_21_1570001 chr2L_1570001 RAL-223 54 chr2L 1591815 1591892 chr2L 1591949 1592025 21 131 5.5 9.5 7.5 2.5 210 chr2L 1591815 intron haf + chr2L 1591920 intron haf + chr2L 1592025 intron haf + chr2L_21_1590001 chr2L_1590001 RAL-223 55 chr2L 1634714 1634763 chr2L 1634856 1634891 21 140 12.0 8.0 10.0 1.9 177 chr2L 1634714 intergenic not near genes chr2L 1634802 intergenic not near genes chr2L 1634891 intergenic not near genes chr2L_21_1630001 chr2L_1630001 RAL-223 56 chr2L 1663852 1663913 chr2L 1664173 1664249 30 336 8.5 7.0 7.8 3.4 397 chr2L 1663852 intron chinmo + chr2L 1664050 intron chinmo + chr2L 1664249 intron chinmo + chr2L_30_1660001 chr2L_1660001 RAL-223 57 chr2L 1678916 1679002 chr2L 1686448 1686517 blood 13 7530 0.0 7.0 3.5 2.9 7601 chr2L 1678916 intron chinmo + chr2L 1682716 intron chinmo + chr2L 1686517 intron chinmo + chr2L_13_1680001 chr2L_1680001 RAL-223 58 chr2L 1711314 1711318 chr2L 1711688 1711692 mdg3 6 374 22.0 12.0 17.0 0.3 378 chr2L 1711314 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711503 3` UTR frtz - chr2L 1711692 3` UTR frtz - chr2L_6_1710001 chr2L_1710001 RAL-223 59 chr2L 1711322 1711381 chr2L 1711684 1711755 mdg3 30 372 12.0 10.0 11.0 2.5 433 chr2L 1711322 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711538 3` UTR frtz - chr2L 1711755 exon frtz - chr2L_30_1710001 chr2L_1710001 RAL-223 60 chr2L 1721781 1721856 chr2L 1721915 1721990 27 128 0.0 8.0 4.0 5.4 209 chr2L 1721781 intron Rim2 - chr2L 1721886 intron Rim2 - chr2L 1721990 intron Rim2 - chr2L_27_1720001 chr2L_1720001 RAL-223 61 chr2L 1744410 1744459 chr2L 1744544 1744594 5 134 1.5 14.0 7.8 0.6 184 chr2L 1744410 intron CG17646 + chr2L 1744502 intron CG17646 + chr2L 1744594 intron CG17646 + chr2L_5_1740001 chr2L_1740001 RAL-223 62 chr2L 1883367 1883445 chr2L 1883999 1884075 15 631 5.0 6.0 5.5 2.3 708 chr2L 1883367 intron CG15358 - chr2L 1883721 intron CG15358 - chr2L 1884075 intergenic CG15358 - chr2L_15_1880001 chr2L_1880001 RAL-223 63 chr2L 1930557 1930629 chr2L 1930685 1930757 27 127 5.5 7.5 6.5 3.6 200 chr2L 1930557 intron CG7337 + chr2L 1930657 intron CG7337 + chr2L 1930757 intron CG7337 + chr2L_27_1930001 chr2L_1930001 RAL-223 64 chr2L 1957908 1957946 chr2L 1958039 1958077 15 130 10.0 16.0 13.0 1.1 169 chr2L 1957908 intron erm - chr2L 1957992 intron erm - chr2L 1958077 intron erm - chr2L_15_1955001 chr2L_1955001 RAL-223 65 chr2L 1962467 1962535 chr2L 1962615 1962683 37 147 7.5 0.0 3.8 7.7 216 chr2L 1962467 intron erm - chr2L 1962575 intron erm - chr2L 1962683 intron erm - chr2L_37_1960001 chr2L_1960001 RAL-223 66 chr2L 2007835 2007852 chr2L 2007993 2008010 10 158 8.5 18.0 13.2 0.7 175 chr2L 2007835 intergenic CR45712 + chr2L 2007922 intergenic CR45712 +,Nplp4 + chr2L 2008010 intergenic CR45712 +,Nplp4 + chr2L_10_2005001 chr2L_2005001 RAL-223 67 chr2L 2007855 2007873 chr2L 2007982 2008031 6 153 6.5 15.5 11.0 0.5 176 chr2L 2007855 intergenic CR45712 + chr2L 2007943 intergenic CR45712 +,Nplp4 + chr2L 2008031 intergenic CR45712 +,Nplp4 + chr2L_6_2005001 chr2L_2005001 RAL-223 68 chr2L 2071788 2071861 chr2L 2072241 2072314 34 451 8.0 8.5 8.2 3.7 526 chr2L 2071788 intron dpr3 - chr2L 2072051 intron dpr3 - chr2L 2072314 intron dpr3 - chr2L_34_2070001 chr2L_2070001 RAL-223 69 chr2L 2093702 2093713 chr2L 2093854 2093865 6 152 18.0 10.5 14.2 0.4 163 chr2L 2093702 intron dpr3 - chr2L 2093784 intron dpr3 - chr2L 2093865 intron dpr3 - chr2L_6_2090001 chr2L_2090001 RAL-223 70 chr2L 2093715 2093755 chr2L 2093852 2093906 15 150 10.0 10.0 10.0 1.4 191 chr2L 2093715 intron dpr3 - chr2L 2093810 intron dpr3 - chr2L 2093906 intron dpr3 - chr2L_15_2090001 chr2L_2090001 RAL-223 71 chr2L 2100376 2100388 chr2L 2109577 2109589 roo 4 9200 10.5 10.5 10.5 0.3 9213 chr2L 2100376 intron dpr3 - chr2L 2104982 intron dpr3 - chr2L 2109589 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-223 72 chr2L 2112076 2112139 chr2L 2119778 2119831 opus 20 7702 4.0 7.5 5.8 2.9 7755 chr2L 2112076 intergenic not near genes chr2L 2115954 intergenic not near genes chr2L 2119831 intergenic not near genes chr2L_20_2115001 chr2L_2115001 RAL-223 73 chr2L 2134144 2134223 chr2L 2134322 2134401 37 177 8.0 7.0 7.5 4.4 257 chr2L 2134144 intron GlyP + chr2L 2134272 intron GlyP + chr2L 2134401 intron GlyP + chr2L_37_2130001 chr2L_2130001 RAL-223 74 chr2L 2260764 2260822 chr2L 2260900 2260958 21 134 10.5 9.0 9.8 1.9 194 chr2L 2260764 intergenic not near genes chr2L 2260861 intergenic not near genes chr2L 2260958 intergenic not near genes chr2L_21_2260001 chr2L_2260001 RAL-223 75 chr2L 2294007 2294031 chr2L 2299262 2299280 copia 5 5249 13.0 12.0 12.5 0.4 5273 chr2L 2294007 intergenic not near genes chr2L 2296644 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-223 76 chr2L 2294057 2294070 chr2L 2299253 2299325 copia 5 5243 7.5 9.5 8.5 0.5 5268 chr2L 2294057 intergenic not near genes chr2L 2296691 intergenic not near genes chr2L 2299325 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-223 77 chr2L 2303467 2303488 chr2L 2303600 2303621 6 133 17.0 7.5 12.2 0.5 154 chr2L 2303467 intergenic not near genes chr2L 2303544 intergenic not near genes chr2L 2303621 intergenic not near genes chr2L_6_2300001 chr2L_2300001 RAL-223 78 chr2L 2303491 2303525 chr2L 2303594 2303615 13 127 8.0 6.5 7.2 1.6 124 chr2L 2303491 intergenic not near genes chr2L 2303553 intergenic not near genes chr2L 2303615 intergenic not near genes chr2L_13_2300001 chr2L_2300001 RAL-223 79 chr2L 2318829 2318841 chr2L 2318956 2318965 6 126 23.5 5.5 14.5 0.4 136 chr2L 2318829 intron,intron CG9967 -,eys + chr2L 2318897 intron,intron CG9967 -,eys + chr2L 2318965 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-223 80 chr2L 2318842 2318905 chr2L 2318951 2319032 30 122 9.0 8.5 8.8 3.1 190 chr2L 2318842 intron,intron CG9967 -,eys + chr2L 2318937 intron,intron CG9967 -,eys + chr2L 2319032 intron,intron CG9967 -,eys + chr2L_30_2315001 chr2L_2315001 RAL-223 81 chr2L 2348061 2348132 chr2L 2348193 2348264 26 129 9.5 10.0 9.8 2.4 203 chr2L 2348061 intron,intron CG9967 -,eys + chr2L 2348162 intron,intron CG9967 -,eys + chr2L 2348264 intron,intron CG9967 -,eys + chr2L_26_2345001 chr2L_2345001 RAL-223 82 chr2L 2372315 2372369 chr2L 2372451 2372505 16 136 7.0 7.5 7.2 2.0 190 chr2L 2372315 intergenic CG3609 - chr2L 2372410 intergenic CG3609 - chr2L 2372505 3` UTR CG3609 - chr2L_16_2370001 chr2L_2370001 RAL-223 83 chr2L 2396252 2396288 chr2L 2396380 2396416 12 128 2.5 5.0 3.8 2.5 164 chr2L 2396252 intron VGlut + chr2L 2396334 intron VGlut + chr2L 2396416 intron VGlut + chr2L_12_2395001 chr2L_2395001 RAL-223 84 chr2L 2399339 2399416 chr2L 2399487 2399564 6 148 0.0 6.0 3.0 1.5 225 chr2L 2399339 intron VGlut + chr2L 2399452 intron VGlut + chr2L 2399564 intron VGlut + chr2L_6_2395001 chr2L_2395001 RAL-223 85 chr2L 2497602 2497616 chr2L 2497728 2497742 6 126 6.0 13.5 9.8 0.6 140 chr2L 2497602 3` UTR oaf + chr2L 2497672 3` UTR oaf + chr2L 2497742 3` UTR oaf + chr2L_6_2495001 chr2L_2495001 RAL-223 86 chr2L 2500334 2500401 chr2L 2500504 2500566 18 168 7.0 7.5 7.2 2.2 232 chr2L 2500334 intergenic not near genes chr2L 2500450 intergenic not near genes chr2L 2500566 intergenic not near genes chr2L_18_2500001 chr2L_2500001 RAL-223 87 chr2L 2513920 2513951 chr2L 2514116 2514147 12 196 14.0 6.0 10.0 1.1 227 chr2L 2513920 intergenic not near genes chr2L 2514034 intergenic not near genes chr2L 2514147 intergenic not near genes chr2L_12_2510001 chr2L_2510001 RAL-223 88 chr2L 2513952 2513996 chr2L 2514112 2514192 21 191 6.5 5.5 6.0 3.0 240 chr2L 2513952 intergenic not near genes chr2L 2514072 intergenic not near genes chr2L 2514192 intergenic not near genes chr2L_21_2510001 chr2L_2510001 RAL-223 89 chr2L 2557144 2557214 chr2L 2557270 2557340 22 125 8.5 9.0 8.8 2.2 196 chr2L 2557144 intergenic not near genes chr2L 2557242 intergenic not near genes chr2L 2557340 intergenic not near genes chr2L_22_2555001 chr2L_2555001 RAL-223 90 chr2L 2563342 2563378 chr2L 2563470 2563506 8 128 14.0 11.5 12.8 0.6 164 chr2L 2563342 exon Cyp309a1 - chr2L 2563424 intron Cyp309a1 - chr2L 2563506 exon Cyp309a1 - chr2L_8_2560001 chr2L_2560001 RAL-223 91 chr2L 2565504 2565562 chr2L 2571627 2571685 297 25 6123 5.0 7.5 6.2 3.5 6181 chr2L 2565504 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571685 exon Cyp309a2 - chr2L_25_2565001 chr2L_2565001 RAL-223 92 chr2L 2617989 2618050 chr2L 2618118 2618178 19 128 7.5 3.0 5.2 3.1 189 chr2L 2617989 intergenic not near genes chr2L 2618084 intergenic not near genes chr2L 2618178 intergenic not near genes chr2L_19_2615001 chr2L_2615001 RAL-223 93 chr2L 2661180 2661230 chr2L 2663041 2663073 I-element 19 1872 5.5 5.0 5.2 3.1 1893 chr2L 2661180 intergenic not near genes chr2L 2662126 intergenic not near genes chr2L 2663073 intergenic not near genes chr2L_19_2660001 chr2L_2660001 RAL-223 94 chr2L 2698806 2698894 chr2L 2698954 2699031 21 138 0.0 8.0 4.0 4.2 225 chr2L 2698806 intron CG31690 + chr2L 2698918 intron CG31690 + chr2L 2699031 intron CG31690 + chr2L_21_2695001 chr2L_2695001 RAL-223 95 chr2L 2713472 2713537 chr2L 2713621 2713686 24 149 10.5 6.0 8.2 2.6 214 chr2L 2713472 intron CG31690 + chr2L 2713579 intron CG31690 + chr2L 2713686 intron CG31690 + chr2L_24_2710001 chr2L_2710001 RAL-223 96 chr2L 2721096 2721129 chr2L 2721246 2721279 12 150 8.0 9.0 8.5 1.3 183 chr2L 2721096 intergenic not near genes chr2L 2721188 intergenic not near genes chr2L 2721279 intergenic not near genes chr2L_12_2720001 chr2L_2720001 RAL-223 97 chr2L 2725124 2725166 chr2L 2725254 2725296 15 130 7.5 11.0 9.2 1.5 172 chr2L 2725124 intergenic not near genes chr2L 2725210 intergenic CG31689 + chr2L 2725296 intergenic CG31689 + chr2L_15_2725001 chr2L_2725001 RAL-223 98 chr2L 2772580 2772588 chr2L 2779214 2779224 297 5 6634 15.0 14.5 14.8 0.3 6644 chr2L 2772580 3` UTR Syt1 - chr2L 2775902 intron Syt1 - chr2L 2779224 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-223 99 chr2L 2772589 2772619 chr2L 2779211 2779253 297 13 6633 8.5 14.5 11.5 1.0 6664 chr2L 2772589 3` UTR Syt1 - chr2L 2775921 intron Syt1 - chr2L 2779253 3` UTR Syt1 - chr2L_13_2775001 chr2L_2775001 RAL-223 100 chr2L 2782868 2782933 chr2L 2782990 2783060 16 126 11.0 1.0 6.0 2.3 192 chr2L 2782868 intron Syt1 - chr2L 2782964 intron Syt1 - chr2L 2783060 3` UTR Syt1 - chr2L_16_2780001 chr2L_2780001 RAL-223 101 chr2L 2800560 2800614 chr2L 2800693 2800752 10 134 7.5 0.0 3.8 2.1 192 chr2L 2800560 intergenic not near genes chr2L 2800656 intergenic not near genes chr2L 2800752 intergenic not near genes chr2L_10_2800001 chr2L_2800001 RAL-223 102 chr2L 2830367 2830406 chr2L 2830547 2830586 20 180 13.0 7.0 10.0 1.8 219 chr2L 2830367 intergenic Duox - chr2L 2830476 intergenic Duox - chr2L 2830586 intergenic Duox - chr2L_20_2830001 chr2L_2830001 RAL-223 103 chr2L 2873431 2873466 chr2L 2873554 2873594 6 127 0.0 10.5 5.2 1.0 163 chr2L 2873431 intron CG31694 - chr2L 2873512 intron CG31694 - chr2L 2873594 intron CG31694 - chr2L_6_2870001 chr2L_2870001 RAL-223 104 chr2L 2874522 2874559 chr2L 2874658 2874695 11 135 7.0 9.0 8.0 1.2 173 chr2L 2874522 intergenic CG31694 -,CG8814 + chr2L 2874608 intergenic CG31694 -,CG8814 + chr2L 2874695 intergenic CG8814 +,CG31694 - chr2L_11_2870001 chr2L_2870001 RAL-223 105 chr2L 2895644 2895648 chr2L 2895780 2895784 4 136 21.0 4.5 12.8 0.3 140 chr2L 2895644 intron lilli + chr2L 2895714 intron lilli + chr2L 2895784 intron lilli + chr2L_4_2895001 chr2L_2895001 RAL-223 106 chr2L 2895652 2895707 chr2L 2895777 2895837 25 135 9.5 4.5 7.0 3.1 185 chr2L 2895652 intron lilli + chr2L 2895744 intron lilli + chr2L 2895837 intron lilli + chr2L_25_2895001 chr2L_2895001 RAL-223 107 chr2L 2927904 2927967 chr2L 2928041 2928104 30 136 5.0 7.0 6.0 4.3 200 chr2L 2927904 intron lilli + chr2L 2928004 intron lilli + chr2L 2928104 intron lilli + chr2L_30_2925001 chr2L_2925001 RAL-223 108 chr2L 2933252 2933324 chr2L 2935478 2935548 pogo 26 2227 3.5 14.0 8.8 2.7 2296 chr2L 2933252 intron lilli + chr2L 2934400 intron lilli + chr2L 2935548 intron lilli + chr2L_26_2930001 chr2L_2930001 RAL-223 109 chr2L 2937364 2937447 chr2L 2937492 2937574 20 127 8.5 9.5 9.0 2.0 210 chr2L 2937364 intron lilli + chr2L 2937469 intron lilli + chr2L 2937574 intron lilli + chr2L_20_2935001 chr2L_2935001 RAL-223 110 chr2L 2964263 2964305 chr2L 2964391 2964433 15 128 11.0 9.5 10.2 1.3 170 chr2L 2964263 3` UTR Rbp9 + chr2L 2964348 3` UTR Rbp9 + chr2L 2964433 3` UTR Rbp9 + chr2L_15_2960001 chr2L_2960001 RAL-223 111 chr2L 3072988 3073054 chr2L 3078241 3078307 copia 38 5253 12.0 16.0 14.0 2.5 5319 chr2L 3072988 intron toc - chr2L 3075648 intron toc - chr2L 3078307 intron toc - chr2L_38_3075001 chr2L_3075001 RAL-223 112 chr2L 3108818 3108894 chr2L 3108945 3109021 34 126 9.5 9.0 9.2 3.3 203 chr2L 3108818 exon toc - chr2L 3108920 intron toc - chr2L 3109021 intron toc - chr2L_34_3105001 chr2L_3105001 RAL-223 113 chr2L 3134241 3134285 chr2L 3134380 3134424 24 139 8.0 16.5 12.2 1.8 183 chr2L 3134241 intron toc - chr2L 3134332 intron toc - chr2L 3134424 intron toc - chr2L_24_3130001 chr2L_3130001 RAL-223 114 chr2L 3185048 3185064 chr2L 3185174 3185190 7 126 9.0 0.0 4.5 1.3 142 chr2L 3185048 exon CG34393 - chr2L 3185119 intron CG34393 - chr2L 3185190 intron CG34393 - chr2L_7_3185001 chr2L_3185001 RAL-223 115 chr2L 3192167 3192233 chr2L 3192323 3192394 36 160 8.5 10.5 9.5 3.4 227 chr2L 3192167 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192394 intron CG34393 - chr2L_36_3190001 chr2L_3190001 RAL-223 116 chr2L 3202697 3202769 chr2L 3210176 3210221 mdg1 16 7477 6.5 0.0 3.2 3.8 7524 chr2L 3202697 intergenic not near genes chr2L 3206459 intergenic not near genes chr2L 3210221 intergenic CR45336 + chr2L_16_3205001 chr2L_3205001 RAL-223 117 chr2L 3251465 3251515 chr2L 3259080 3259130 springer 16 7614 4.0 10.5 7.2 2.0 7665 chr2L 3251465 intergenic not near genes chr2L 3255298 intergenic not near genes chr2L 3259130 intergenic not near genes chr2L_16_3255001 chr2L_3255001 RAL-223 118 chr2L 3272925 3272968 chr2L 3273051 3273127 4 151 6.0 0.0 3.0 1.0 202 chr2L 3272925 intergenic not near genes chr2L 3273026 intergenic not near genes chr2L 3273127 intergenic not near genes chr2L_4_3270001 chr2L_3270001 RAL-223 119 chr2L 3291205 3291267 chr2L 3291335 3291396 30 130 6.0 10.5 8.2 3.3 191 chr2L 3291205 intergenic CG9664 - chr2L 3291300 3` UTR CG9664 - chr2L 3291396 3` UTR CG9664 - chr2L_30_3290001 chr2L_3290001 RAL-223 120 chr2L 3317047 3317116 chr2L 3317182 3317252 22 136 11.0 10.5 10.8 1.9 205 chr2L 3317047 exon,3` UTR CG3277 +,CG3326 - chr2L 3317150 3` UTR,3` UTR CG3277 +,CG3326 - chr2L 3317252 3` UTR,3` UTR CG3277 +,CG3326 - chr2L_22_3315001 chr2L_3315001 RAL-223 121 chr2L 3347372 3347396 chr2L 3347498 3347522 4 125 13.5 13.0 13.2 0.3 150 chr2L 3347372 intron E23 - chr2L 3347447 intron E23 - chr2L 3347522 intron E23 - chr2L_4_3345001 chr2L_3345001 RAL-223 122 chr2L 3388556 3388623 chr2L 3388847 3388914 pogo 19 291 4.0 9.0 6.5 2.5 358 chr2L 3388556 intergenic CG42460 - chr2L 3388735 intergenic CG42460 - chr2L 3388914 intergenic CG42460 -,CR44791 + chr2L_19_3385001 chr2L_3385001 RAL-223 123 chr2L 3401184 3401243 chr2L 3401317 3401376 16 133 10.5 2.5 6.5 2.1 192 chr2L 3401184 intergenic not near genes chr2L 3401280 intergenic not near genes chr2L 3401376 intergenic not near genes chr2L_16_3400001 chr2L_3400001 RAL-223 124 chr2L 3401250 3401261 chr2L 3401374 3401394 5 131 7.5 12.5 10.0 0.5 144 chr2L 3401250 intergenic not near genes chr2L 3401322 intergenic not near genes chr2L 3401394 intergenic not near genes chr2L_5_3400001 chr2L_3400001 RAL-223 125 chr2L 3467440 3467513 chr2L 3467723 3467797 25 284 7.0 12.0 9.5 2.4 357 chr2L 3467440 3` UTR CG3238 - chr2L 3467618 3` UTR CG3238 - chr2L 3467797 3` UTR CG3238 - chr2L_25_3465001 chr2L_3465001 RAL-223 126 chr2L 3477446 3477463 chr2L 3477586 3477603 8 140 0.0 8.5 4.2 1.5 157 chr2L 3477446 5` UTR CR43928 + chr2L 3477524 5` UTR CR43928 + chr2L 3477603 5` UTR CR43928 + chr2L_8_3475001 chr2L_3475001 RAL-223 127 chr2L 3482107 3482170 chr2L 3482247 3482310 26 139 9.0 9.0 9.0 2.6 203 chr2L 3482107 intron CG15414 - chr2L 3482208 intron CG15414 - chr2L 3482310 intron CG15414 - chr2L_26_3480001 chr2L_3480001 RAL-223 128 chr2L 3522982 3523053 chr2L 3523145 3523216 27 162 7.0 9.0 8.0 3.0 234 chr2L 3522982 exon Sr-CIV - chr2L 3523099 intron Sr-CIV - chr2L 3523216 exon Sr-CIV - chr2L_27_3520001 chr2L_3520001 RAL-223 129 chr2L 3535430 3535455 chr2L 3535559 3535585 9 130 13.5 7.5 10.5 0.8 155 chr2L 3535430 intergenic not near genes chr2L 3535508 intergenic not near genes chr2L 3535585 intergenic not near genes chr2L_9_3535001 chr2L_3535001 RAL-223 130 chr2L 3535466 3535498 chr2L 3535596 3535628 6 130 5.0 16.0 10.5 0.5 162 chr2L 3535466 intergenic not near genes chr2L 3535547 intergenic not near genes chr2L 3535628 intergenic not near genes chr2L_6_3535001 chr2L_3535001 RAL-223 131 chr2L 3556887 3556959 chr2L 3557027 3557101 8 134 0.0 6.5 3.2 1.9 214 chr2L 3556887 intergenic not near genes chr2L 3556994 intergenic not near genes chr2L 3557101 intergenic not near genes chr2L_8_3555001 chr2L_3555001 RAL-223 132 chr2L 3643413 3643451 chr2L 3643544 3643582 12 130 8.0 6.5 7.2 1.5 169 chr2L 3643413 intron for - chr2L 3643498 intron for - chr2L 3643582 intron for - chr2L_12_3640001 chr2L_3640001 RAL-223 133 chr2L 3649748 3649807 chr2L 3655000 3655059 copia 28 5252 4.5 11.5 8.0 3.1 5311 chr2L 3649748 intron for - chr2L 3652404 intron for - chr2L 3655059 intron for - chr2L_28_3650001 chr2L_3650001 RAL-223 134 chr2L 3685232 3685235 chr2L 3685364 3685367 4 132 23.5 0.0 11.8 0.3 135 chr2L 3685232 intron CG34340 + chr2L 3685300 intron CG34340 + chr2L 3685367 intron CG34340 + chr2L_4_3685001 chr2L_3685001 RAL-223 135 chr2L 3685978 3686049 chr2L 3686116 3686187 20 138 1.0 5.0 3.0 5.0 209 chr2L 3685978 intron CG34340 + chr2L 3686082 intron CG34340 + chr2L 3686187 intron CG34340 + chr2L_20_3685001 chr2L_3685001 RAL-223 136 chr2L 3784757 3784827 chr2L 3785666 3785736 11 909 36.5 33.0 34.8 0.3 979 chr2L 3784757 intergenic CG31960 + chr2L 3785246 exon CG31960 + chr2L 3785736 intergenic CG31958 +,CG31960 + chr2L_11_3785001 chr2L_3785001 RAL-223 137 chr2L 3784697 3784748 chr2L 3785588 3785634 16 893 38.0 40.0 39.0 0.4 937 chr2L 3784697 intergenic CG31960 + chr2L 3785166 exon CG31960 + chr2L 3785634 intergenic CG31960 +,CG31958 + chr2L_16_3785001 chr2L_3785001 RAL-223 138 chr2L 3784753 3784774 chr2L 3786362 3786381 5 1607 35.5 28.0 31.8 0.2 1628 chr2L 3784753 intergenic CG31960 + chr2L 3785567 3` UTR CG31960 + chr2L 3786381 intergenic CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-223 139 chr2L 3818986 3819027 chr2L 3819118 3819159 15 132 15.5 0.0 7.8 1.7 173 chr2L 3818986 intergenic CR44077 + chr2L 3819072 intergenic not near genes chr2L 3819159 intergenic not near genes chr2L_15_3815001 chr2L_3815001 RAL-223 140 chr2L 3821022 3821080 chr2L 3821148 3821206 8 125 0.0 5.5 2.8 2.1 184 chr2L 3821022 intergenic not near genes chr2L 3821114 intergenic not near genes chr2L 3821206 intergenic not near genes chr2L_8_3820001 chr2L_3820001 RAL-223 141 chr2L 3862378 3862388 chr2L 3862512 3862522 5 134 5.0 0.0 2.5 1.4 144 chr2L 3862378 intergenic CR44078 -,CG3964 + chr2L 3862450 intergenic CG3964 +,CR44078 - chr2L 3862522 intergenic CG3964 +,CR44078 - chr2L_5_3860001 chr2L_3860001 RAL-223 142 chr2L 3915291 3915321 chr2L 3915477 3915507 14 186 5.0 5.5 5.2 2.3 216 chr2L 3915291 intron fred - chr2L 3915399 intron fred - chr2L 3915507 intron fred - chr2L_14_3915001 chr2L_3915001 RAL-223 143 chr2L 3929077 3929126 chr2L 3929212 3929261 20 135 8.5 8.0 8.2 2.2 184 chr2L 3929077 intron fred - chr2L 3929169 intron fred - chr2L 3929261 intron fred - chr2L_20_3925001 chr2L_3925001 RAL-223 144 chr2L 3936615 3936655 chr2L 3936745 3936785 20 128 5.5 12.5 9.0 2.0 170 chr2L 3936615 intron fred - chr2L 3936700 intron fred - chr2L 3936785 intron fred - chr2L_20_3935001 chr2L_3935001 RAL-223 145 chr2L 3938329 3938346 chr2L 3938467 3938484 11 138 4.0 0.0 2.0 3.7 155 chr2L 3938329 intron fred - chr2L 3938406 intron fred - chr2L 3938484 intron fred - chr2L_11_3935001 chr2L_3935001 RAL-223 146 chr2L 3968970 3969035 chr2L 3969945 3970010 28 974 7.5 7.5 7.5 3.3 1040 chr2L 3968970 intron fred - chr2L 3969490 intron fred - chr2L 3970010 intron fred - chr2L_28_3965001 chr2L_3965001 RAL-223 147 chr2L 3993398 3993462 chr2L 3993773 3993837 25 375 8.0 8.0 8.0 2.8 439 chr2L 3993398 intergenic not near genes chr2L 3993618 intergenic not near genes chr2L 3993837 intergenic not near genes chr2L_25_3990001 chr2L_3990001 RAL-223 148 chr2L 4027666 4027697 chr2L 4027792 4027792 14 124 5.5 12.5 9.0 1.4 126 chr2L 4027666 intergenic not near genes chr2L 4027729 intergenic not near genes chr2L 4027792 intergenic not near genes chr2L_14_4025001 chr2L_4025001 RAL-223 149 chr2L 4066001 4066053 chr2L 4068876 4068928 Juan 21 2875 7.0 12.5 9.8 1.9 2927 chr2L 4066001 intron ed + chr2L 4067464 intron ed + chr2L 4068928 intron ed + chr2L_21_4065001 chr2L_4065001 RAL-223 150 chr2L 4147925 4147963 chr2L 4148051 4148089 17 124 4.0 7.0 5.5 2.6 164 chr2L 4147925 intergenic not near genes chr2L 4148007 intergenic not near genes chr2L 4148089 intergenic not near genes chr2L_17_4145001 chr2L_4145001 RAL-223 151 chr2L 4150572 4150652 chr2L 4150702 4150782 17 128 3.0 5.5 4.2 3.3 210 chr2L 4150572 exon CG2955 + chr2L 4150677 exon CG2955 + chr2L 4150782 exon CG2955 + chr2L_17_4150001 chr2L_4150001 RAL-223 152 chr2L 4166333 4166396 chr2L 4166466 4166529 33 133 10.0 11.5 10.8 2.8 196 chr2L 4166333 intergenic Or24a - chr2L 4166431 intergenic Or24a - chr2L 4166529 intergenic Or24a - chr2L_33_4165001 chr2L_4165001 RAL-223 153 chr2L 4195082 4195108 chr2L 4195218 4195244 13 136 3.5 9.0 6.2 1.8 162 chr2L 4195082 exon CG3714 - chr2L 4195163 intron CG3714 - chr2L 4195244 intron CG3714 - chr2L_13_4195001 chr2L_4195001 RAL-223 154 chr2L 4245903 4245978 chr2L 4246127 4246202 26 224 5.0 5.5 5.2 4.2 299 chr2L 4245903 intergenic CR44059 - chr2L 4246052 intergenic CR44059 - chr2L 4246202 intergenic CR44059 - chr2L_26_4245001 chr2L_4245001 RAL-223 155 chr2L 4256530 4256572 chr2L 4256660 4256702 9 130 0.0 8.5 4.2 1.7 172 chr2L 4256530 intergenic CR45295 -,CR45296 -,CR45294 - chr2L 4256616 intergenic CR45295 -,CR45296 - chr2L 4256702 intergenic CR45296 -,CR45295 - chr2L_9_4255001 chr2L_4255001 RAL-223 156 chr2L 4334706 4334767 chr2L 4334835 4334896 18 119 12.0 8.0 10.0 1.6 190 chr2L 4334706 intron Atet + chr2L 4334801 intron Atet + chr2L 4334896 intron Atet + chr2L_18_4330001 chr2L_4330001 RAL-223 157 chr2L 4351423 4351496 chr2L 4351548 4351634 26 131 7.0 1.0 4.0 5.2 211 chr2L 4351423 5` UTR CR44700 + chr2L 4351528 intergenic CR44700 + chr2L 4351634 intergenic CR44700 + chr2L_26_4350001 chr2L_4350001 RAL-223 158 chr2L 4360011 4360015 chr2L 4360137 4360141 4 126 16.5 1.0 8.8 0.4 130 chr2L 4360011 intergenic not near genes chr2L 4360076 intergenic not near genes chr2L 4360141 intergenic not near genes chr2L_4_4360001 chr2L_4360001 RAL-223 159 chr2L 4373665 4373693 chr2L 4373814 4373833 8 147 17.0 0.0 8.5 0.8 168 chr2L 4373665 intron Traf4 + chr2L 4373749 intron Traf4 + chr2L 4373833 intron Traf4 + chr2L_8_4370001 chr2L_4370001 RAL-223 160 chr2L 4388390 4388400 chr2L 4388584 4388594 7 194 20.5 11.0 15.8 0.4 204 chr2L 4388390 5` UTR Tps1 + chr2L 4388492 5` UTR Tps1 + chr2L 4388594 5` UTR Tps1 + chr2L_7_4385001 chr2L_4385001 RAL-223 161 chr2L 4388406 4388458 chr2L 4388580 4388652 26 189 8.0 9.5 8.8 2.7 246 chr2L 4388406 5` UTR Tps1 + chr2L 4388529 5` UTR Tps1 + chr2L 4388652 5` UTR Tps1 + chr2L_26_4385001 chr2L_4385001 RAL-223 162 chr2L 4435036 4435211 chr2L 4435172 4435343 20 133 2.0 2.0 2.0 6.7 307 chr2L 4435036 intron,3` UTR,3` UTR CG15431 -,CG34177 +,CG34178 + chr2L 4435190 intron CG15431 - chr2L 4435343 intron CG15431 - chr2L_20_4435001 chr2L_4435001 RAL-223 163 chr2L 4437167 4437240 chr2L 4437297 4437369 37 129 8.0 7.0 7.5 4.4 202 chr2L 4437167 intron CG15431 - chr2L 4437268 intron CG15431 - chr2L 4437369 intron CG15431 - chr2L_37_4435001 chr2L_4435001 RAL-223 164 chr2L 4601663 4601727 chr2L 4609154 4609218 mdg1 23 7491 10.0 9.0 9.5 2.2 7555 chr2L 4601663 intron dp - chr2L 4605440 intron dp - chr2L 4609218 intron dp - chr2L_23_4605001 chr2L_4605001 RAL-223 165 chr2L 4661794 4661846 chr2L 4669424 4669476 opus 21 7630 8.0 12.5 10.2 1.9 7682 chr2L 4661794 intergenic not near genes chr2L 4665635 intergenic not near genes chr2L 4669476 intergenic not near genes chr2L_21_4665001 chr2L_4665001 RAL-223 166 chr2L 4710296 4710367 chr2L 4710429 4710500 24 132 5.5 6.0 5.8 3.5 204 chr2L 4710296 intron CG34351 + chr2L 4710398 intron CG34351 + chr2L 4710500 intron CG34351 + chr2L_24_4710001 chr2L_4710001 RAL-223 167 chr2L 4752346 4752356 chr2L 4752481 4752491 6 135 26.5 1.0 13.8 0.4 145 chr2L 4752346 intron CG15630 - chr2L 4752418 intron CG15630 - chr2L 4752491 intron CG15630 - chr2L_6_4750001 chr2L_4750001 RAL-223 168 chr2L 4781082 4781159 chr2L 4781242 4781304 17 148 8.0 0.5 4.2 3.3 222 chr2L 4781082 intron CG15630 - chr2L 4781193 intron CG15630 - chr2L 4781304 intron CG15630 - chr2L_17_4780001 chr2L_4780001 RAL-223 169 chr2L 4793286 4793321 chr2L 4793631 4793666 15 344 7.0 12.0 9.5 1.4 380 chr2L 4793286 intron CG15630 - chr2L 4793476 intron CG15630 - chr2L 4793666 exon CG15630 - chr2L_15_4790001 chr2L_4790001 RAL-223 170 chr2L 4862246 4862258 chr2L 4862372 4862384 10 126 25.0 12.5 18.8 0.5 138 chr2L 4862246 intron pog + chr2L 4862315 intron pog + chr2L 4862384 intron pog + chr2L_10_4860001 chr2L_4860001 RAL-223 171 chr2L 4862260 4862307 chr2L 4862367 4862433 26 123 15.5 14.0 14.8 1.6 173 chr2L 4862260 intron pog + chr2L 4862346 intron pog + chr2L 4862433 intron pog + chr2L_26_4860001 chr2L_4860001 RAL-223 172 chr2L 4867740 4867908 chr2L 4867992 4868041 5 151 0.5 0.5 0.5 3.3 301 chr2L 4867740 intron pog + chr2L 4867890 intron pog + chr2L 4868041 intron pog + chr2L_5_4865001 chr2L_4865001 RAL-223 173 chr2L 4879119 4879167 chr2L 4880377 4880444 19 1278 46.5 41.0 43.8 0.4 1325 chr2L 4879119 exon Cf2 - chr2L 4879782 intron Cf2 - chr2L 4880444 exon Cf2 - chr2L_19_4875001 chr2L_4875001 RAL-223 174 chr2L 4880382 4880398 chr2L 4881227 4881243 7 845 36.5 48.0 42.2 0.2 861 chr2L 4880382 exon Cf2 - chr2L 4880812 intron Cf2 - chr2L 4881243 exon Cf2 - chr2L_7_4880001 chr2L_4880001 RAL-223 175 chr2L 4880400 4880452 chr2L 4881225 4881258 19 838 34.5 46.5 40.5 0.5 858 chr2L 4880400 exon Cf2 - chr2L 4880829 intron Cf2 - chr2L 4881258 exon Cf2 - chr2L_19_4880001 chr2L_4880001 RAL-223 176 chr2L 4918117 4918197 chr2L 4923240 4923358 jockey 12 5152 4.5 0.5 2.5 3.4 5241 chr2L 4918117 intron hoe1 - chr2L 4920738 intron hoe1 - chr2L 4923358 intron hoe1 - chr2L_12_4920001 chr2L_4920001 RAL-223 177 chr2L 4925627 4925695 chr2L 4925756 4925824 6 129 4.0 5.5 4.8 1.0 197 chr2L 4925627 intron hoe1 - chr2L 4925726 intron hoe1 - chr2L 4925824 intron hoe1 - chr2L_6_4925001 chr2L_4925001 RAL-223 178 chr2L 4953479 4953484 chr2L 4953770 4953775 pogo 4 291 16.0 0.0 8.0 0.4 296 chr2L 4953479 intergenic Jon25Bii - chr2L 4953627 intergenic Jon25Bii - chr2L 4953775 intergenic not near genes chr2L_4_4950001 chr2L_4950001 RAL-223 179 chr2L 5027918 5027993 chr2L 5028052 5028100 13 131 4.0 6.5 5.2 2.1 182 chr2L 5027918 intron vkg - chr2L 5028009 intron vkg - chr2L 5028100 intron vkg - chr2L_13_5025001 chr2L_5025001 RAL-223 180 chr2L 5092361 5092443 chr2L 5092498 5092580 26 137 8.5 4.0 6.2 3.6 219 chr2L 5092361 intron pgant5 - chr2L 5092470 intron pgant5 - chr2L 5092580 intron pgant5 - chr2L_26_5090001 chr2L_5090001 RAL-223 181 chr2L 5117252 5117325 chr2L 5117384 5117452 29 132 5.0 10.0 7.5 3.4 200 chr2L 5117252 intron Msp300 + chr2L 5117352 intron Msp300 + chr2L 5117452 intron Msp300 + chr2L_29_5115001 chr2L_5115001 RAL-223 182 chr2L 5120927 5120995 chr2L 5121071 5121139 30 143 12.5 4.0 8.2 3.3 212 chr2L 5120927 intron Msp300 + chr2L 5121033 intron Msp300 + chr2L 5121139 intron Msp300 + chr2L_30_5120001 chr2L_5120001 RAL-223 183 chr2L 5245475 5245501 chr2L 5246606 5246632 6 1129 17.5 7.5 12.5 0.4 1157 chr2L 5245475 intron tkv - chr2L 5246054 intron tkv - chr2L 5246632 intron tkv - chr2L_6_5245001 chr2L_5245001 RAL-223 184 chr2L 5342760 5342796 chr2L 5345155 5345191 Doc 17 2395 0.0 0.5 0.2 14.2 2431 chr2L 5342760 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345191 intergenic not near genes chr2L_17_5340001 chr2L_5340001 RAL-223 185 chr2L 5347153 5347212 chr2L 5347282 5347341 23 127 12.0 0.5 6.2 3.2 188 chr2L 5347153 exon nompC + chr2L 5347247 intron nompC + chr2L 5347341 intron nompC + chr2L_23_5345001 chr2L_5345001 RAL-223 186 chr2L 5448014 5448019 chr2L 5448148 5448152 4 134 0.0 16.5 8.2 0.4 138 chr2L 5448014 intergenic not near genes chr2L 5448083 intergenic not near genes chr2L 5448152 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-223 187 chr2L 5500010 5500070 chr2L 5500146 5500196 27 135 0.5 11.0 5.8 4.0 186 chr2L 5500010 intergenic not near genes chr2L 5500103 intergenic not near genes chr2L 5500196 intergenic not near genes chr2L_27_5500001 chr2L_5500001 RAL-223 188 chr2L 5550068 5550137 chr2L 5550196 5550270 6 128 2.0 2.5 2.2 1.9 202 chr2L 5550068 exon CG14014 - chr2L 5550169 exon CG14014 - chr2L 5550270 exon CG14014 - chr2L_6_5550001 chr2L_5550001 RAL-223 189 chr2L 5563636 5563694 chr2L 5563770 5563828 21 134 9.5 8.5 9.0 2.1 192 chr2L 5563636 intergenic GluRIIB + chr2L 5563732 intergenic GluRIIB + chr2L 5563828 intergenic GluRIIB + chr2L_21_5560001 chr2L_5560001 RAL-223 190 chr2L 5646644 5646666 chr2L 5646773 5646796 5 129 15.0 12.0 13.5 0.3 152 chr2L 5646644 intron CG31646 - chr2L 5646720 intron CG31646 - chr2L 5646796 intron CG31646 - chr2L_5_5645001 chr2L_5645001 RAL-223 191 chr2L 5666244 5666324 chr2L 5666382 5666464 11 139 1.5 4.0 2.8 2.9 220 chr2L 5666244 intron Hsp60C + chr2L 5666354 intron Hsp60C + chr2L 5666464 intron Hsp60C + chr2L_11_5665001 chr2L_5665001 RAL-223 192 chr2L 5682246 5682313 chr2L 5682380 5682440 27 129 8.5 6.5 7.5 3.2 194 chr2L 5682246 intergenic not near genes chr2L 5682343 intergenic not near genes chr2L 5682440 intergenic not near genes chr2L_27_5680001 chr2L_5680001 RAL-223 193 chr2L 5686408 5686443 chr2L 5686540 5686575 13 131 12.0 15.0 13.5 0.9 167 chr2L 5686408 intergenic not near genes chr2L 5686492 intergenic not near genes chr2L 5686575 intergenic not near genes chr2L_13_5685001 chr2L_5685001 RAL-223 194 chr2L 5691781 5691841 chr2L 5691933 5691993 14 152 6.5 0.5 3.5 3.1 212 chr2L 5691781 intergenic CR44819 +,CR44820 - chr2L 5691887 intergenic CR44819 +,CR44820 - chr2L 5691993 intergenic CR44819 + chr2L_14_5690001 chr2L_5690001 RAL-223 195 chr2L 5695816 5695881 chr2L 5695953 5696023 26 142 11.5 6.0 8.8 2.7 207 chr2L 5695816 intergenic not near genes chr2L 5695920 intergenic not near genes chr2L 5696023 intergenic not near genes chr2L_26_5695001 chr2L_5695001 RAL-223 196 chr2L 5805795 5805859 chr2L 5806216 5806280 28 421 10.0 11.5 10.8 2.4 485 chr2L 5805795 intron CG11034 + chr2L 5806038 intron CG11034 + chr2L 5806280 intron CG11034 + chr2L_28_5805001 chr2L_5805001 RAL-223 197 chr2L 5825415 5825482 chr2L 5825564 5825630 18 149 6.0 5.5 5.8 2.6 215 chr2L 5825415 intron TrissinR + chr2L 5825522 intron TrissinR + chr2L 5825630 intron TrissinR + chr2L_18_5825001 chr2L_5825001 RAL-223 198 chr2L 5827670 5827736 chr2L 5836728 5836794 roo 24 9056 9.5 4.0 6.8 3.1 9124 chr2L 5827670 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836794 intron TrissinR + chr2L_24_5830001 chr2L_5830001 RAL-223 199 chr2L 5870430 5870500 chr2L 5870557 5870627 31 126 3.0 6.0 4.5 5.6 197 chr2L 5870430 intron rau - chr2L 5870528 intron rau - chr2L 5870627 intron rau - chr2L_31_5870001 chr2L_5870001 RAL-223 200 chr2L 5874492 5874570 chr2L 5874627 5874705 33 134 4.0 6.5 5.2 5.3 213 chr2L 5874492 intron rau - chr2L 5874598 intron rau - chr2L 5874705 intron rau - chr2L_33_5870001 chr2L_5870001 RAL-223 201 chr2L 5887553 5887631 chr2L 5887684 5887742 30 130 6.0 10.0 8.0 3.3 189 chr2L 5887553 3` UTR CR44577 - chr2L 5887648 3` UTR CR44577 - chr2L 5887742 3` UTR CR44577 - chr2L_30_5885001 chr2L_5885001 RAL-223 202 chr2L 5897548 5897619 chr2L 5897681 5897752 39 130 11.0 9.5 10.2 3.5 204 chr2L 5897548 intergenic not near genes chr2L 5897650 intergenic not near genes chr2L 5897752 intergenic not near genes chr2L_39_5895001 chr2L_5895001 RAL-223 203 chr2L 5926273 5926572 chr2L 5926449 5926701 24 155 9.0 0.0 4.5 4.4 428 chr2L 5926273 intron dsf + chr2L 5926487 intron dsf + chr2L 5926701 intron dsf + chr2L_24_5925001 chr2L_5925001 RAL-223 204 chr2L 5926580 5926608 chr2L 5926709 5926737 11 129 9.0 0.0 4.5 2.0 157 chr2L 5926580 intron dsf + chr2L 5926658 intron dsf + chr2L 5926737 intron dsf + chr2L_11_5925001 chr2L_5925001 RAL-223 205 chr2L 5944552 5944589 chr2L 5948944 5948981 10 4394 42.5 52.0 47.2 0.2 4429 chr2L 5944552 intron Gpdh + chr2L 5946766 intron Gpdh + chr2L 5948981 intergenic Gpdh +,CG9044 + chr2L_10_5945001 chr2L_5945001 RAL-223 206 chr2L 5988985 5989045 chr2L 5989111 5989171 24 124 11.0 2.5 6.8 3.1 186 chr2L 5988985 intergenic ifc +,lid - chr2L 5989078 intergenic ifc +,lid - chr2L 5989171 intergenic lid -,ifc + chr2L_24_5985001 chr2L_5985001 RAL-223 207 chr2L 5993281 5993352 chr2L 5993422 5993493 46 141 9.5 12.5 11.0 3.8 212 chr2L 5993281 exon lid - chr2L 5993387 intron lid - chr2L 5993493 exon lid - chr2L_46_5990001 chr2L_5990001 RAL-223 208 chr2L 6002404 6002460 chr2L 6002540 6002596 26 136 7.0 9.5 8.2 2.8 192 chr2L 6002404 3` UTR Tsp26A + chr2L 6002500 3` UTR Tsp26A + chr2L 6002596 3` UTR Tsp26A + chr2L_26_6000001 chr2L_6000001 RAL-223 209 chr2L 6029241 6029288 chr2L 6029378 6029425 25 137 9.5 7.0 8.2 2.7 184 chr2L 6029241 intron CG9109 - chr2L 6029333 intron CG9109 - chr2L 6029425 intron CG9109 - chr2L_25_6025001 chr2L_6025001 RAL-223 210 chr2L 6050394 6050465 chr2L 6050548 6050619 26 154 5.0 3.0 4.0 5.2 225 chr2L 6050394 3` UTR CG12393 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050619 intergenic CG12393 +,CG9135 + chr2L_26_6050001 chr2L_6050001 RAL-223 211 chr2L 6070906 6070909 chr2L 6071045 6071048 4 139 0.0 18.5 9.2 0.4 142 chr2L 6070906 intergenic Kr-h2 +,CG9154 - chr2L 6070977 intergenic Kr-h2 +,CG9154 - chr2L 6071048 5` UTR Kr-h2 + chr2L_4_6070001 chr2L_6070001 RAL-223 212 chr2L 6070910 6070917 chr2L 6071034 6071056 5 136 0.0 16.5 8.2 0.5 146 chr2L 6070910 intergenic Kr-h2 +,CG9154 - chr2L 6070983 intergenic Kr-h2 +,CG9154 - chr2L 6071056 5` UTR Kr-h2 + chr2L_5_6070001 chr2L_6070001 RAL-223 213 chr2L 6117438 6117509 chr2L 6117564 6117625 23 126 9.0 5.0 7.0 2.9 187 chr2L 6117438 intron stai + chr2L 6117532 intron stai + chr2L 6117625 intron stai + chr2L_23_6115001 chr2L_6115001 RAL-223 214 chr2L 6130718 6130775 chr2L 6130853 6130909 11 135 11.0 0.0 5.5 1.7 191 chr2L 6130718 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130814 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130909 intergenic CG9222 +,CG42730 -,tectonic - chr2L_11_6130001 chr2L_6130001 RAL-223 215 chr2L 6136481 6136538 chr2L 6136648 6136705 18 167 10.0 2.5 6.2 2.5 224 chr2L 6136481 intergenic not near genes chr2L 6136593 intergenic not near genes chr2L 6136705 intergenic not near genes chr2L_18_6135001 chr2L_6135001 RAL-223 216 chr2L 6268472 6268546 chr2L 6268608 6268682 16 136 6.0 3.0 4.5 2.9 210 chr2L 6268472 intron Ddr + chr2L 6268577 intron Ddr + chr2L 6268682 intron Ddr + chr2L_16_6265001 chr2L_6265001 RAL-223 217 chr2L 6283903 6283972 chr2L 6284064 6284133 16 161 10.0 0.0 5.0 2.7 230 chr2L 6283903 intron Ddr + chr2L 6284018 intron Ddr + chr2L 6284133 intron Ddr + chr2L_16_6280001 chr2L_6280001 RAL-223 218 chr2L 6312355 6312362 chr2L 6312482 6312489 4 127 0.0 17.0 8.5 0.4 134 chr2L 6312355 intron Ddr + chr2L 6312422 intron Ddr + chr2L 6312489 intron Ddr + chr2L_4_6310001 chr2L_6310001 RAL-223 219 chr2L 6349029 6349074 chr2L 6349157 6349189 25 127 6.0 6.5 6.2 3.5 160 chr2L 6349029 intergenic CG9498 - chr2L 6349109 intergenic CG9498 - chr2L 6349189 intergenic CG9498 - chr2L_25_6345001 chr2L_6345001 RAL-223 220 chr2L 6357755 6357827 chr2L 6357887 6357950 20 125 9.0 6.5 7.8 2.3 195 chr2L 6357755 exon CG9500 - chr2L 6357852 exon CG9500 - chr2L 6357950 exon CG9500 - chr2L_20_6355001 chr2L_6355001 RAL-223 221 chr2L 6363111 6363179 chr2L 6366083 6366151 Burdock 26 2972 7.5 6.0 6.8 3.3 3040 chr2L 6363111 intergenic not near genes chr2L 6364631 intergenic not near genes chr2L 6366151 intergenic not near genes chr2L_26_6360001 chr2L_6360001 RAL-223 222 chr2L 6426810 6426885 chr2L 6445120 6445190 roo 36 18309 9.0 5.5 7.2 4.4 18380 chr2L 6426810 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445190 exon CG9527 - chr2L_36_6435001 chr2L_6435001 RAL-223 223 chr2L 6463523 6463554 chr2L 6463665 6463696 14 140 14.5 12.5 13.5 1.0 173 chr2L 6463523 exon CG16947 - chr2L 6463610 exon CG16947 - chr2L 6463696 exon CG16947 - chr2L_14_6460001 chr2L_6460001 RAL-223 224 chr2L 6463555 6463568 chr2L 6463660 6463694 6 133 11.0 11.0 11.0 0.5 139 chr2L 6463555 exon CG16947 - chr2L 6463624 exon CG16947 - chr2L 6463694 exon CG16947 - chr2L_6_6460001 chr2L_6460001 RAL-223 225 chr2L 6463569 6463578 chr2L 6463645 6463679 5 115 8.0 5.5 6.8 0.6 110 chr2L 6463569 exon CG16947 - chr2L 6463624 exon CG16947 - chr2L 6463679 exon CG16947 - chr2L_5_6460001 chr2L_6460001 RAL-223 226 chr2L 6483576 6483589 chr2L 6483762 6483778 4 190 5.5 0.0 2.8 1.1 202 chr2L 6483576 exon DLP + chr2L 6483677 exon DLP + chr2L 6483778 exon DLP + chr2L_4_6480001 chr2L_6480001 RAL-223 227 chr2L 6483592 6483775 chr2L 6483737 6483904 5 138 0.0 0.0 0.0 5.0 312 chr2L 6483592 exon DLP + chr2L 6483748 exon DLP + chr2L 6483904 exon DLP + chr2L_5_6480001 chr2L_6480001 RAL-223 228 chr2L 6516004 6516071 chr2L 6516136 6516203 30 132 5.0 9.5 7.2 3.7 199 chr2L 6516004 intron CG31637 + chr2L 6516104 intron CG31637 + chr2L 6516203 intron CG31637 + chr2L_30_6515001 chr2L_6515001 RAL-223 229 chr2L 6544323 6544393 chr2L 6544465 6544535 36 142 10.0 13.5 11.8 2.8 212 chr2L 6544323 intron eya - chr2L 6544429 intron eya - chr2L 6544535 intron eya - chr2L_36_6540001 chr2L_6540001 RAL-223 230 chr2L 6590047 6590125 chr2L 6590175 6590228 27 126 5.5 0.5 3.0 6.8 181 chr2L 6590047 intron CG11319 - chr2L 6590138 intron CG11319 - chr2L 6590228 intron CG11319 - chr2L_27_6590001 chr2L_6590001 RAL-223 231 chr2L 6626853 6626910 chr2L 6626980 6627045 34 133 11.5 13.0 12.2 2.6 192 chr2L 6626853 intron Oatp26F - chr2L 6626949 intron Oatp26F - chr2L 6627045 intron Oatp26F - chr2L_34_6625001 chr2L_6625001 RAL-223 232 chr2L 6641465 6641529 chr2L 6643457 6643520 23 1990 68.5 50.0 59.2 0.4 2055 chr2L 6641465 intron CG31635 - chr2L 6642492 intron CG31635 - chr2L 6643520 intron CG31635 - chr2L_23_6640001 chr2L_6640001 RAL-223 233 chr2L 6772547 6772594 chr2L 6772680 6772727 17 131 12.5 15.5 14.0 1.1 180 chr2L 6772547 intron CG11321 - chr2L 6772637 5` UTR CG11321 - chr2L 6772727 5` UTR CG11321 - chr2L_17_6770001 chr2L_6770001 RAL-223 234 chr2L 6799507 6799559 chr2L 6799639 6799697 19 138 11.5 7.5 9.5 1.8 190 chr2L 6799507 5` UTR CR43610 + chr2L 6799602 intergenic CR43610 +,CG17376 - chr2L 6799697 intergenic CR43610 +,CG17376 - chr2L_19_6795001 chr2L_6795001 RAL-223 235 chr2L 6818078 6818135 chr2L 6818217 6818272 15 138 4.5 6.5 5.5 2.3 194 chr2L 6818078 intergenic not near genes chr2L 6818175 intergenic not near genes chr2L 6818272 intergenic not near genes chr2L_15_6815001 chr2L_6815001 RAL-223 236 chr2L 6850347 6850403 chr2L 6850480 6850536 24 133 8.0 7.5 7.8 2.7 189 chr2L 6850347 intergenic not near genes chr2L 6850442 intergenic not near genes chr2L 6850536 intergenic not near genes chr2L_24_6850001 chr2L_6850001 RAL-223 237 chr2L 6867747 6867765 chr2L 6867887 6867905 11 140 14.0 14.0 14.0 0.7 158 chr2L 6867747 intron Nha1 - chr2L 6867826 intron Nha1 - chr2L 6867905 intron Nha1 - chr2L_11_6865001 chr2L_6865001 RAL-223 238 chr2L 6876733 6876772 chr2L 6882974 6883013 diver 12 6238 18.5 12.0 15.2 0.7 6280 chr2L 6876733 intron Nlg2 + chr2L 6879873 intron Nlg2 + chr2L 6883013 intron Nlg2 + chr2L_12_6875001 chr2L_6875001 RAL-223 239 chr2L 6876773 6876797 chr2L 6882967 6882972 diver 7 6211 11.0 10.5 10.8 0.6 6199 chr2L 6876773 intron Nlg2 + chr2L 6879872 intron Nlg2 + chr2L 6882972 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-223 240 chr2L 6991387 6991436 chr2L 6998556 6998605 HMS-Beagle 16 7168 11.5 2.0 6.8 2.1 7218 chr2L 6991387 intron uif - chr2L 6994996 intron uif - chr2L 6998605 intron uif - chr2L_16_6990001 chr2L_6990001 RAL-223 241 chr2L 7030049 7030094 chr2L 7030180 7030225 20 131 9.5 7.5 8.5 2.1 176 chr2L 7030049 intergenic Rab30 - chr2L 7030137 intergenic Rab30 - chr2L 7030225 intergenic Rab30 - chr2L_20_7030001 chr2L_7030001 RAL-223 242 chr2L 7041235 7041287 chr2L 7041374 7041426 26 139 0.5 8.0 4.2 5.0 191 chr2L 7041235 intron milt + chr2L 7041330 intron milt + chr2L 7041426 intron milt + chr2L_26_7040001 chr2L_7040001 RAL-223 243 chr2L 7043501 7043532 chr2L 7043685 7043716 12 184 0.0 12.0 6.0 1.7 215 chr2L 7043501 intron milt + chr2L 7043608 intron milt + chr2L 7043716 intron milt + chr2L_12_7040001 chr2L_7040001 RAL-223 244 chr2L 7081657 7081714 chr2L 7081788 7081845 26 131 11.5 5.5 8.5 2.7 188 chr2L 7081657 intron Pvf2 - chr2L 7081751 intron Pvf2 - chr2L 7081845 intron Pvf2 - chr2L_26_7080001 chr2L_7080001 RAL-223 245 chr2L 7089952 7090022 chr2L 7090079 7090124 27 124 8.0 5.0 6.5 3.6 172 chr2L 7089952 intergenic not near genes chr2L 7090038 intergenic not near genes chr2L 7090124 intergenic not near genes chr2L_27_7090001 chr2L_7090001 RAL-223 246 chr2L 7115378 7115450 chr2L 7115539 7115611 31 161 4.0 8.5 6.2 4.3 233 chr2L 7115378 intron Pvf3 - chr2L 7115494 intron Pvf3 - chr2L 7115611 intron Pvf3 - chr2L_31_7115001 chr2L_7115001 RAL-223 247 chr2L 7125744 7125808 chr2L 7125910 7125974 26 166 10.5 6.0 8.2 2.8 230 chr2L 7125744 intron Pvf3 - chr2L 7125859 intron Pvf3 - chr2L 7125974 intron Pvf3 - chr2L_26_7125001 chr2L_7125001 RAL-223 248 chr2L 7126823 7126847 chr2L 7126952 7126976 12 129 13.0 0.0 6.5 1.6 153 chr2L 7126823 intron Pvf3 - chr2L 7126900 intron Pvf3 - chr2L 7126976 intron Pvf3 - chr2L_12_7125001 chr2L_7125001 RAL-223 249 chr2L 7165744 7165810 chr2L 7165875 7165941 15 130 5.5 6.5 6.0 2.1 197 chr2L 7165744 intergenic not near genes chr2L 7165842 intergenic not near genes chr2L 7165941 intergenic not near genes chr2L_15_7165001 chr2L_7165001 RAL-223 250 chr2L 7179617 7179689 chr2L 7179797 7179869 20 179 10.5 8.5 9.5 1.9 252 chr2L 7179617 intergenic not near genes chr2L 7179743 intergenic not near genes chr2L 7179869 intergenic not near genes chr2L_20_7175001 chr2L_7175001 RAL-223 251 chr2L 7258864 7258915 chr2L 7258988 7259008 12 122 8.5 5.0 6.8 1.5 144 chr2L 7258864 intron Wnt4 - chr2L 7258936 intron Wnt4 - chr2L 7259008 intron Wnt4 - chr2L_12_7255001 chr2L_7255001 RAL-223 252 chr2L 7335160 7335230 chr2L 7335307 7335377 19 147 10.0 5.5 7.8 2.2 217 chr2L 7335160 intron Wnt6 + chr2L 7335268 intron Wnt6 + chr2L 7335377 intron Wnt6 + chr2L_19_7335001 chr2L_7335001 RAL-223 253 chr2L 7343285 7343338 chr2L 7350451 7350498 roo 28 7164 10.0 9.0 9.5 2.7 7213 chr2L 7343285 intron Wnt6 + chr2L 7346892 intron Wnt6 + chr2L 7350498 intron Wnt6 + chr2L_28_7345001 chr2L_7345001 RAL-223 254 chr2L 7370748 7370813 chr2L 7370903 7370968 18 155 5.5 3.5 4.5 3.3 220 chr2L 7370748 intron Wnt10 + chr2L 7370858 intron Wnt10 + chr2L 7370968 intron Wnt10 + chr2L_18_7370001 chr2L_7370001 RAL-223 255 chr2L 7377846 7377902 chr2L 7377993 7378049 13 147 1.0 7.0 4.0 2.6 203 chr2L 7377846 5` UTR ninaC + chr2L 7377948 intron ninaC + chr2L 7378049 intron ninaC + chr2L_13_7375001 chr2L_7375001 RAL-223 256 chr2L 7432774 7432779 chr2L 7432901 7432906 5 127 0.0 5.0 2.5 1.4 132 chr2L 7432774 intron CG5958 - chr2L 7432840 intron CG5958 - chr2L 7432906 intron CG5958 - chr2L_5_7430001 chr2L_7430001 RAL-223 257 chr2L 7548073 7548087 chr2L 7550564 7550578 Burdock 5 2491 10.5 13.5 12.0 0.4 2505 chr2L 7548073 intron RapGAP1 - chr2L 7549326 intron RapGAP1 - chr2L 7550578 intron RapGAP1 - chr2L_5_7545001 chr2L_7545001 RAL-223 258 chr2L 7555197 7555234 chr2L 7555324 7555361 12 127 0.0 7.0 3.5 2.7 164 chr2L 7555197 intron RapGAP1 - chr2L 7555279 intron RapGAP1 - chr2L 7555361 intron RapGAP1 - chr2L_12_7555001 chr2L_7555001 RAL-223 259 chr2L 7579190 7579232 chr2L 7579448 7579490 BS 15 258 4.5 6.5 5.5 2.3 300 chr2L 7579190 intergenic RapGAP1 - chr2L 7579340 intergenic RapGAP1 - chr2L 7579490 intergenic not near genes chr2L_15_7575001 chr2L_7575001 RAL-223 260 chr2L 7585456 7585469 chr2L 7585605 7585618 8 149 9.0 5.5 7.2 1.0 162 chr2L 7585456 intergenic not near genes chr2L 7585537 intergenic not near genes chr2L 7585618 intergenic not near genes chr2L_8_7585001 chr2L_7585001 RAL-223 261 chr2L 7640378 7640419 chr2L 7640514 7640555 22 135 9.5 8.5 9.0 2.2 177 chr2L 7640378 intergenic not near genes chr2L 7640466 intergenic not near genes chr2L 7640555 intergenic not near genes chr2L_22_7640001 chr2L_7640001 RAL-223 262 chr2L 7663998 7664067 chr2L 7664145 7664214 28 147 8.0 0.0 4.0 5.6 216 chr2L 7663998 intron Slob - chr2L 7664106 intron Slob - chr2L 7664214 intron Slob - chr2L_28_7660001 chr2L_7660001 RAL-223 263 chr2L 7727728 7727783 chr2L 7727881 7727936 20 153 11.0 12.5 11.8 1.6 208 chr2L 7727728 exon CG13796 - chr2L 7727832 exon CG13796 - chr2L 7727936 exon CG13796 - chr2L_20_7725001 chr2L_7725001 RAL-223 264 chr2L 7867526 7867590 chr2L 7867670 7867734 29 144 11.0 2.5 6.8 3.7 208 chr2L 7867526 intron Proc - chr2L 7867630 intron Proc - chr2L 7867734 intron Proc - chr2L_29_7865001 chr2L_7865001 RAL-223 265 chr2L 7873070 7873077 chr2L 7873202 7873209 4 131 5.5 6.5 6.0 0.6 139 chr2L 7873070 intergenic spz3 - chr2L 7873140 intergenic spz3 - chr2L 7873209 intergenic spz3 - chr2L_4_7870001 chr2L_7870001 RAL-223 266 chr2L 7887659 7887675 chr2L 7887790 7887807 5 132 1.0 15.0 8.0 0.6 148 chr2L 7887659 intergenic Spn28Da -,CG7102 - chr2L 7887733 3` UTR Spn28Da - chr2L 7887807 exon Spn28Da - chr2L_5_7885001 chr2L_7885001 RAL-223 267 chr2L 7922697 7922766 chr2L 7922828 7922897 35 131 7.5 8.5 8.0 3.9 200 chr2L 7922697 intron Snoo - chr2L 7922797 intron Snoo - chr2L 7922897 intron Snoo - chr2L_35_7920001 chr2L_7920001 RAL-223 268 chr2L 7959000 7959058 chr2L 7960461 7960519 pogo 32 1461 11.0 11.5 11.2 2.6 1519 chr2L 7959000 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960519 intron Snoo - chr2L_32_7955001 chr2L_7955001 RAL-223 269 chr2L 7977049 7977111 chr2L 7984075 7984137 297 28 7025 9.0 9.0 9.0 2.8 7088 chr2L 7977049 intron Snoo - chr2L 7980593 intron Snoo - chr2L 7984137 5` UTR,5` UTR Snoo -,CG7231 + chr2L_28_7980001 chr2L_7980001 RAL-223 270 chr2L 7986881 7986915 chr2L 7987017 7987052 10 137 2.5 8.0 5.2 1.6 171 chr2L 7986881 3` UTR pes - chr2L 7986966 3` UTR pes - chr2L 7987052 3` UTR pes - chr2L_10_7985001 chr2L_7985001 RAL-223 271 chr2L 8002978 8003116 chr2L 8003111 8003252 12 155 0.0 0.0 0.0 12.0 274 chr2L 8002978 intron Wwox - chr2L 8003115 intron Wwox - chr2L 8003252 intron Wwox - chr2L_12_8000001 chr2L_8000001 RAL-223 272 chr2L 8013577 8013584 chr2L 8018831 8018838 copia 5 5254 29.5 0.0 14.8 0.3 5261 chr2L 8013577 intron Tg + chr2L 8016208 intron Tg + chr2L 8018838 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-223 273 chr2L 8013619 8013645 chr2L 8023604 8023630 copia 12 9985 15.5 11.5 13.5 0.8 10011 chr2L 8013619 intron Tg + chr2L 8018624 intron Tg + chr2L 8023630 intron Tg + chr2L_12_8015001 chr2L_8015001 RAL-223 274 chr2L 8018817 8018831 chr2L 8023651 8023665 Doc 5 4834 0.0 23.5 11.8 0.4 4848 chr2L 8018817 intron Tg + chr2L 8021241 intron Tg + chr2L 8023665 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-223 275 chr2L 8032584 8032588 chr2L 8032725 8032729 5 141 16.5 0.0 8.2 0.5 145 chr2L 8032584 intron,exon CG7367 -,Cka + chr2L 8032656 intron,intron CG7367 -,Cka + chr2L 8032729 intron,intron CG7367 -,Cka + chr2L_5_8030001 chr2L_8030001 RAL-223 276 chr2L 8034564 8034580 chr2L 8034709 8034731 8 148 11.0 11.0 11.0 0.7 167 chr2L 8034564 intron,intron CG7367 -,Cka + chr2L 8034648 intron,intron CG7367 -,Cka + chr2L 8034731 intron,intron CG7367 -,Cka + chr2L_8_8030001 chr2L_8030001 RAL-223 277 chr2L 8044053 8044126 chr2L 8044179 8044255 30 129 9.0 11.0 10.0 2.7 202 chr2L 8044053 exon CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044255 intron CG7466 + chr2L_30_8040001 chr2L_8040001 RAL-223 278 chr2L 8084160 8084241 chr2L 8084306 8084382 33 146 8.0 9.0 8.5 3.5 222 chr2L 8084160 intron Bsg + chr2L 8084271 intron Bsg + chr2L 8084382 intron Bsg + chr2L_33_8080001 chr2L_8080001 RAL-223 279 chr2L 8167099 8167172 chr2L 8167240 8167313 28 141 7.5 8.5 8.0 3.1 214 chr2L 8167099 intron Piezo + chr2L 8167206 intron Piezo + chr2L 8167313 intron Piezo + chr2L_28_8165001 chr2L_8165001 RAL-223 280 chr2L 8171274 8171299 chr2L 8171405 8171430 11 131 0.5 16.0 8.2 1.2 156 chr2L 8171274 intron Piezo + chr2L 8171352 intron Piezo + chr2L 8171430 intron Piezo + chr2L_11_8170001 chr2L_8170001 RAL-223 281 chr2L 8185484 8185516 chr2L 8185623 8185655 6 139 0.0 17.0 8.5 0.6 171 chr2L 8185484 intron Piezo + chr2L 8185570 intron Piezo + chr2L 8185655 intron Piezo + chr2L_6_8185001 chr2L_8185001 RAL-223 282 chr2L 8196840 8196916 chr2L 8196975 8197050 22 133 5.5 8.5 7.0 2.8 210 chr2L 8196840 5` UTR,5` UTR CG8475 -,CR44116 + chr2L 8196945 5` UTR CR44116 + chr2L 8197050 intergenic CR44116 +,CG8475 -,CG8460 + chr2L_22_8195001 chr2L_8195001 RAL-223 283 chr2L 8230270 8230342 chr2L 8230404 8230472 21 134 6.0 4.0 5.0 3.5 202 chr2L 8230270 5` UTR Pvr - chr2L 8230371 intron Pvr - chr2L 8230472 intron Pvr - chr2L_21_8230001 chr2L_8230001 RAL-223 284 chr2L 8322911 8322934 chr2L 8323037 8323060 8 126 5.0 12.5 8.8 0.8 149 chr2L 8322911 exon CG7781 - chr2L 8322986 intron CG7781 - chr2L 8323060 intron CG7781 - chr2L_8_8320001 chr2L_8320001 RAL-223 285 chr2L 8336900 8336966 chr2L 8337029 8337060 17 126 4.0 12.0 8.0 1.9 160 chr2L 8336900 intergenic not near genes chr2L 8336980 intergenic not near genes chr2L 8337060 intergenic not near genes chr2L_17_8335001 chr2L_8335001 RAL-223 286 chr2L 8349558 8349630 chr2L 8349713 8349785 14 153 5.5 6.5 6.0 2.0 227 chr2L 8349558 exon CG7778 + chr2L 8349672 intron CG7778 + chr2L 8349785 exon CG7778 + chr2L_14_8345001 chr2L_8345001 RAL-223 287 chr2L 8351540 8351583 chr2L 8351667 8351710 13 127 0.0 10.0 5.0 2.2 170 chr2L 8351540 intergenic CG7778 + chr2L 8351625 intergenic not near genes chr2L 8351710 intergenic Mur29B + chr2L_13_8350001 chr2L_8350001 RAL-223 288 chr2L 8452379 8452447 chr2L 8461600 8461668 roo 26 9220 7.5 10.0 8.8 2.7 9289 chr2L 8452379 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461668 intron fu12 - chr2L_26_8455001 chr2L_8455001 RAL-223 289 chr2L 8461794 8461871 chr2L 8461925 8462002 18 130 5.5 9.0 7.2 2.2 208 chr2L 8461794 intron fu12 - chr2L 8461898 intron fu12 - chr2L 8462002 intron fu12 - chr2L_18_8460001 chr2L_8460001 RAL-223 290 chr2L 8502609 8502686 chr2L 8502743 8502820 32 134 7.0 5.0 6.0 4.6 211 chr2L 8502609 intron Dh31 - chr2L 8502714 intron Dh31 - chr2L 8502820 intron Dh31 - chr2L_32_8500001 chr2L_8500001 RAL-223 291 chr2L 8568786 8568824 chr2L 8569085 8569123 13 299 8.5 13.0 10.8 1.1 337 chr2L 8568786 intron Sema-1a + chr2L 8568954 intron Sema-1a + chr2L 8569123 intron Sema-1a + chr2L_13_8565001 chr2L_8565001 RAL-223 292 chr2L 8594424 8594486 chr2L 8601528 8601590 297 19 7102 8.5 6.5 7.5 2.2 7166 chr2L 8594424 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598007 intron Sema-1a + chr2L 8601590 intron Sema-1a + chr2L_19_8595001 chr2L_8595001 RAL-223 293 chr2L 8604926 8604991 chr2L 8605074 8605139 25 148 8.5 8.5 8.5 2.6 213 chr2L 8604926 intron Sema-1a + chr2L 8605032 intron Sema-1a + chr2L 8605139 intron Sema-1a + chr2L_25_8605001 chr2L_8605001 RAL-223 294 chr2L 8612801 8612862 chr2L 8612939 8612989 15 132 0.0 9.0 4.5 2.7 188 chr2L 8612801 intron Sema-1a + chr2L 8612895 intron Sema-1a + chr2L 8612989 intron Sema-1a + chr2L_15_8610001 chr2L_8610001 RAL-223 295 chr2L 8644224 8644279 chr2L 8644351 8644406 13 127 1.5 8.5 5.0 2.2 182 chr2L 8644224 intron Sema-1a + chr2L 8644315 intron Sema-1a + chr2L 8644406 intron Sema-1a + chr2L_13_8640001 chr2L_8640001 RAL-223 296 chr2L 8687038 8687068 chr2L 8687192 8687222 13 154 10.0 7.0 8.5 1.4 184 chr2L 8687038 3` UTR Trs23 + chr2L 8687130 intergenic Trs23 +,Hnf4 - chr2L 8687222 intergenic Hnf4 -,Trs23 + chr2L_13_8685001 chr2L_8685001 RAL-223 297 chr2L 8723074 8723132 chr2L 8731501 8731559 Tirant 18 8427 12.0 7.5 9.8 1.7 8485 chr2L 8723074 intron raw - chr2L 8727316 intron raw - chr2L 8731559 intron raw - chr2L_18_8725001 chr2L_8725001 RAL-223 298 chr2L 8736218 8736253 chr2L 8736347 8736382 11 130 0.5 7.5 4.0 2.2 164 chr2L 8736218 intron raw - chr2L 8736300 intron raw - chr2L 8736382 intron raw - chr2L_11_8735001 chr2L_8735001 RAL-223 299 chr2L 8791273 8791305 chr2L 8791400 8791432 12 127 9.5 4.5 7.0 1.5 159 chr2L 8791273 intergenic not near genes chr2L 8791352 intergenic not near genes chr2L 8791432 intergenic not near genes chr2L_12_8790001 chr2L_8790001 RAL-223 300 chr2L 8857937 8858001 chr2L 8858064 8858129 20 123 7.5 6.0 6.8 2.6 192 chr2L 8857937 intergenic not near genes chr2L 8858033 intergenic not near genes chr2L 8858129 intergenic not near genes chr2L_20_8855001 chr2L_8855001 RAL-223 301 chr2L 8880337 8880407 chr2L 8880464 8880534 24 127 8.0 9.0 8.5 2.5 197 chr2L 8880337 intergenic not near genes chr2L 8880436 intergenic not near genes chr2L 8880534 intergenic not near genes chr2L_24_8880001 chr2L_8880001 RAL-223 302 chr2L 8891857 8891898 chr2L 8891986 8892028 11 127 6.5 8.5 7.5 1.3 171 chr2L 8891857 3` UTR CG42713 + chr2L 8891942 3` UTR CG42713 + chr2L 8892028 3` UTR CG42713 + chr2L_11_8890001 chr2L_8890001 RAL-223 303 chr2L 8956188 8956243 chr2L 8956315 8956375 11 130 6.0 6.0 6.0 1.6 187 chr2L 8956188 intron CG31886 - chr2L 8956282 intron CG31886 - chr2L 8956375 intron CG31886 - chr2L_11_8955001 chr2L_8955001 RAL-223 304 chr2L 8967422 8967500 chr2L 8967709 8967741 31 285 6.5 6.5 6.5 4.1 319 chr2L 8967422 intergenic CG18088 +,CG32984 + chr2L 8967582 exon CG18088 + chr2L 8967741 exon CG18088 + chr2L_31_8965001 chr2L_8965001 RAL-223 305 chr2L 8976209 8976240 chr2L 8976423 8976480 9 237 0.0 6.0 3.0 2.2 271 chr2L 8976209 intergenic not near genes chr2L 8976344 intergenic not near genes chr2L 8976480 intergenic not near genes chr2L_9_8975001 chr2L_8975001 RAL-223 306 chr2L 8997267 8997338 chr2L 8997581 8997652 23 314 56.0 64.5 60.2 0.4 385 chr2L 8997267 5` UTR alien - chr2L 8997460 intergenic alien -,CG18661 + chr2L 8997652 5` UTR CG18661 + chr2L_23_8995001 chr2L_8995001 RAL-223 307 chr2L 9000238 9000296 chr2L 9007798 9007856 roo 26 7560 12.5 6.0 9.2 2.5 7618 chr2L 9000238 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007856 intergenic not near genes chr2L_26_9000001 chr2L_9000001 RAL-223 308 chr2L 9058808 9058852 chr2L 9058943 9058987 11 135 11.0 2.5 6.8 1.4 179 chr2L 9058808 intron CG31708 - chr2L 9058898 intron CG31708 - chr2L 9058987 intron CG31708 - chr2L_11_9055001 chr2L_9055001 RAL-223 309 chr2L 9064283 9064356 chr2L 9064432 9064505 18 149 6.0 7.0 6.5 2.4 222 chr2L 9064283 intron CG31708 - chr2L 9064394 intron CG31708 - chr2L 9064505 intron CG31708 - chr2L_18_9060001 chr2L_9060001 RAL-223 310 chr2L 9190897 9190960 chr2L 9191036 9191091 8 133 1.5 16.0 8.8 0.8 194 chr2L 9190897 intron tai + chr2L 9190994 intron tai + chr2L 9191091 intron tai + chr2L_8_9190001 chr2L_9190001 RAL-223 311 chr2L 9217942 9218004 chr2L 9222779 9222848 Doc 18 4842 2.0 3.0 2.5 5.1 4906 chr2L 9217942 intron tai + chr2L 9220395 intron tai + chr2L 9222848 intron tai + chr2L_18_9220001 chr2L_9220001 RAL-223 312 chr2L 9225364 9225431 chr2L 9225493 9225556 8 121 5.0 8.5 6.8 1.0 192 chr2L 9225364 intron tai + chr2L 9225460 intron tai + chr2L 9225556 intron tai + chr2L_8_9225001 chr2L_9225001 RAL-223 313 chr2L 9269050 9269118 chr2L 9269256 9269306 29 204 9.5 8.5 9.0 2.9 256 chr2L 9269050 intron Ggamma30A + chr2L 9269178 intron Ggamma30A + chr2L 9269306 intron Ggamma30A + chr2L_29_9265001 chr2L_9265001 RAL-223 314 chr2L 9270699 9270750 chr2L 9270844 9270895 25 144 13.0 11.5 12.2 1.9 196 chr2L 9270699 intron Ggamma30A + chr2L 9270797 intron Ggamma30A + chr2L 9270895 intron Ggamma30A + chr2L_25_9270001 chr2L_9270001 RAL-223 315 chr2L 9270754 9270767 chr2L 9270835 9270882 5 126 7.5 11.5 9.5 0.5 128 chr2L 9270754 intron Ggamma30A + chr2L 9270818 intron Ggamma30A + chr2L 9270882 intron Ggamma30A + chr2L_5_9270001 chr2L_9270001 RAL-223 316 chr2L 9274151 9274216 chr2L 9274283 9274343 27 126 7.5 9.5 8.5 2.8 192 chr2L 9274151 intron Ggamma30A + chr2L 9274247 intron Ggamma30A + chr2L 9274343 intron Ggamma30A + chr2L_27_9270001 chr2L_9270001 RAL-223 317 chr2L 9279945 9280012 chr2L 9280089 9280156 23 141 5.5 6.5 6.0 3.3 211 chr2L 9279945 intron Ggamma30A + chr2L 9280050 intron Ggamma30A + chr2L 9280156 intron Ggamma30A + chr2L_23_9280001 chr2L_9280001 RAL-223 318 chr2L 9283156 9283170 chr2L 9283283 9283297 9 127 13.0 6.0 9.5 0.9 141 chr2L 9283156 intron Ggamma30A + chr2L 9283226 intron Ggamma30A + chr2L 9283297 intron Ggamma30A + chr2L_9_9280001 chr2L_9280001 RAL-223 319 chr2L 9284980 9285046 chr2L 9285106 9285157 32 121 5.0 6.5 5.8 4.7 177 chr2L 9284980 intron Ggamma30A + chr2L 9285068 intron Ggamma30A + chr2L 9285157 intron Ggamma30A + chr2L_32_9285001 chr2L_9285001 RAL-223 320 chr2L 9287281 9287293 chr2L 9287428 9287440 10 147 13.5 7.5 10.5 0.9 159 chr2L 9287281 intron Ggamma30A + chr2L 9287360 intron Ggamma30A + chr2L 9287440 intron Ggamma30A + chr2L_10_9285001 chr2L_9285001 RAL-223 321 chr2L 9287296 9287351 chr2L 9287427 9287498 29 146 6.5 7.5 7.0 3.6 202 chr2L 9287296 intron Ggamma30A + chr2L 9287397 intron Ggamma30A + chr2L 9287498 intron Ggamma30A + chr2L_29_9285001 chr2L_9285001 RAL-223 322 chr2L 9297329 9297400 chr2L 9297456 9297527 33 125 7.0 8.5 7.8 3.7 198 chr2L 9297329 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297527 3` UTR Ggamma30A + chr2L_33_9295001 chr2L_9295001 RAL-223 323 chr2L 9300641 9300707 chr2L 9300787 9300853 20 146 5.5 5.5 5.5 3.1 212 chr2L 9300641 3` UTR Ggamma30A + chr2L 9300747 3` UTR Ggamma30A + chr2L 9300853 3` UTR Ggamma30A + chr2L_20_9300001 chr2L_9300001 RAL-223 324 chr2L 9304300 9304509 chr2L 9304434 9304606 40 130 1.5 0.5 1.0 20.0 306 chr2L 9304300 intergenic CR42844 - chr2L 9304453 3` UTR CR42844 - chr2L 9304606 3` UTR CR42844 - chr2L_40_9300001 chr2L_9300001 RAL-223 325 chr2L 9346697 9346774 chr2L 9346836 9346912 15 138 9.0 0.0 4.5 2.7 215 chr2L 9346697 intergenic not near genes chr2L 9346804 intergenic not near genes chr2L 9346912 intergenic not near genes chr2L_15_9345001 chr2L_9345001 RAL-223 326 chr2L 9364279 9364334 chr2L 9364427 9364476 6 141 0.0 9.5 4.8 1.0 197 chr2L 9364279 intergenic CR43404 + chr2L 9364378 intron CR43404 + chr2L 9364476 5` UTR CR43404 + chr2L_6_9360001 chr2L_9360001 RAL-223 327 chr2L 9380195 9380250 chr2L 9380340 9380395 19 145 5.0 7.5 6.2 2.6 200 chr2L 9380195 exon Shawl - chr2L 9380295 intron Shawl - chr2L 9380395 intron Shawl - chr2L_19_9380001 chr2L_9380001 RAL-223 328 chr2L 9387205 9387272 chr2L 9387353 9387420 11 148 5.5 3.5 4.5 2.0 215 chr2L 9387205 intron Shawl - chr2L 9387312 intron Shawl - chr2L 9387420 intron,5` UTR Shawl -,Aldh + chr2L_11_9385001 chr2L_9385001 RAL-223 329 chr2L 9393445 9393521 chr2L 9396463 9396538 jockey 18 3017 8.5 5.5 7.0 2.2 3093 chr2L 9393445 intron Shawl - chr2L 9394992 intron Shawl - chr2L 9396538 intron Shawl - chr2L_18_9390001 chr2L_9390001 RAL-223 330 chr2L 9407861 9407898 chr2L 9407993 9408030 16 132 11.0 9.0 10.0 1.5 169 chr2L 9407861 intron Shawl - chr2L 9407946 intron Shawl - chr2L 9408030 intron Shawl - chr2L_16_9405001 chr2L_9405001 RAL-223 331 chr2L 9451002 9451063 chr2L 9451155 9451207 14 152 1.5 7.5 4.5 2.5 205 chr2L 9451002 intron numb + chr2L 9451104 intron numb + chr2L 9451207 intron numb + chr2L_14_9450001 chr2L_9450001 RAL-223 332 chr2L 9456881 9456962 chr2L 9457012 9457093 19 130 4.0 4.0 4.0 3.8 212 chr2L 9456881 intron numb + chr2L 9456987 intron numb + chr2L 9457093 intron numb + chr2L_19_9455001 chr2L_9455001 RAL-223 333 chr2L 9506393 9506450 chr2L 9506593 9506650 25 198 7.5 6.0 6.8 3.2 257 chr2L 9506393 intron CG33298 + chr2L 9506522 intron CG33298 + chr2L 9506650 intron CG33298 + chr2L_25_9505001 chr2L_9505001 RAL-223 334 chr2L 9618097 9618170 chr2L 9618670 9618744 30 571 7.0 8.0 7.5 3.5 647 chr2L 9618097 intron GlcAT-S + chr2L 9618420 intron GlcAT-S + chr2L 9618744 intron GlcAT-S + chr2L_30_9615001 chr2L_9615001 RAL-223 335 chr2L 9619608 9619620 chr2L 9619743 9619755 5 135 0.0 0.0 0.0 5.0 147 chr2L 9619608 intron GlcAT-S + chr2L 9619682 intron GlcAT-S + chr2L 9619755 intron GlcAT-S + chr2L_5_9615001 chr2L_9615001 RAL-223 336 chr2L 9719741 9719782 chr2L 9719873 9719914 14 132 0.0 5.5 2.8 3.7 173 chr2L 9719741 intron Nckx30C - chr2L 9719828 intron Nckx30C - chr2L 9719914 intron Nckx30C - chr2L_14_9715001 chr2L_9715001 RAL-223 337 chr2L 9733511 9733584 chr2L 9733653 9733726 25 142 7.0 5.5 6.2 3.5 215 chr2L 9733511 exon Nckx30C - chr2L 9733618 intron Nckx30C - chr2L 9733726 intron Nckx30C - chr2L_25_9730001 chr2L_9730001 RAL-223 338 chr2L 9843217 9843236 chr2L 9843348 9843362 8 130 0.0 12.5 6.2 1.1 145 chr2L 9843217 intron nAChRalpha6 - chr2L 9843290 intron nAChRalpha6 - chr2L 9843362 intron nAChRalpha6 - chr2L_8_9840001 chr2L_9840001 RAL-223 339 chr2L 9844805 9844867 chr2L 9845435 9845492 16 628 5.5 6.5 6.0 2.3 687 chr2L 9844805 intron nAChRalpha6 - chr2L 9845148 intron nAChRalpha6 - chr2L 9845492 intron nAChRalpha6 - chr2L_16_9845001 chr2L_9845001 RAL-223 340 chr2L 9851156 9851226 chr2L 9851634 9851704 29 477 6.0 9.0 7.5 3.4 548 chr2L 9851156 intron nAChRalpha6 - chr2L 9851430 intron nAChRalpha6 - chr2L 9851704 intron nAChRalpha6 - chr2L_29_9850001 chr2L_9850001 RAL-223 341 chr2L 9863366 9863431 chr2L 9863513 9863578 28 146 9.0 10.0 9.5 2.7 212 chr2L 9863366 intron nAChRalpha6 - chr2L 9863472 intron nAChRalpha6 - chr2L 9863578 intron nAChRalpha6 - chr2L_28_9860001 chr2L_9860001 RAL-223 342 chr2L 9871498 9871546 chr2L 9871637 9871685 12 139 7.5 0.0 3.8 2.5 187 chr2L 9871498 intron nAChRalpha6 - chr2L 9871592 intron nAChRalpha6 - chr2L 9871685 intron nAChRalpha6 - chr2L_12_9870001 chr2L_9870001 RAL-223 343 chr2L 9948017 9948028 chr2L 9948147 9948158 9 130 0.0 19.5 9.8 0.8 141 chr2L 9948017 intergenic CG5853 - chr2L 9948088 intergenic CG5853 - chr2L 9948158 intergenic not near genes chr2L_9_9945001 chr2L_9945001 RAL-223 344 chr2L 9973684 9973691 chr2L 9980851 9980860 HMS-Beagle 5 7168 19.5 11.0 15.2 0.3 7176 chr2L 9973684 intergenic not near genes chr2L 9977272 intergenic not near genes chr2L 9980860 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-223 345 chr2L 9973694 9973710 chr2L 9980863 9980879 HMS-Beagle 6 7168 17.5 13.0 15.2 0.4 7185 chr2L 9973694 intergenic not near genes chr2L 9977286 intergenic not near genes chr2L 9980879 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-223 346 chr2L 9973711 9973728 chr2L 9980855 9980892 HMS-Beagle 8 7165 13.5 12.0 12.8 0.6 7181 chr2L 9973711 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980892 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-223 347 chr2L 9973729 9973756 chr2L 9980847 9980925 HMS-Beagle 14 7165 8.5 10.0 9.2 1.4 7196 chr2L 9973729 intergenic not near genes chr2L 9977327 intergenic not near genes chr2L 9980925 intergenic not near genes chr2L_14_9975001 chr2L_9975001 RAL-223 348 chr2L 9986309 9986371 chr2L 9986449 9986516 30 140 10.5 9.0 9.8 2.8 207 chr2L 9986309 intron bib + chr2L 9986412 intron bib + chr2L 9986516 intron bib + chr2L_30_9985001 chr2L_9985001 RAL-223 349 chr2L 10030006 10030036 chr2L 10030201 10030231 8 195 0.0 11.0 5.5 1.2 225 chr2L 10030006 intergenic not near genes chr2L 10030118 intergenic not near genes chr2L 10030231 intergenic not near genes chr2L_8_10030001 chr2L_10030001 RAL-223 350 chr2L 10051674 10051750 chr2L 10051809 10051885 26 128 9.0 6.5 7.8 3.0 211 chr2L 10051674 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051885 5` UTR CR44874 + chr2L_26_10050001 chr2L_10050001 RAL-223 351 chr2L 10110138 10110174 chr2L 10110251 10110303 16 128 7.0 7.0 7.0 2.0 165 chr2L 10110138 intron,intron CG44153 -,CG34109 + chr2L 10110220 intron,intron CG44153 -,CG34109 + chr2L 10110303 intron,intron CG44153 -,CG34109 + chr2L_16_10110001 chr2L_10110001 RAL-223 352 chr2L 10138141 10138182 chr2L 10143435 10143476 Rt1c 19 5293 11.5 16.0 13.8 1.3 5335 chr2L 10138141 intron CG44153 - chr2L 10140808 intron CG44153 - chr2L 10143476 intron CG44153 - chr2L_19_10140001 chr2L_10140001 RAL-223 353 chr2L 10156277 10156348 chr2L 10163797 10163868 blood 39 7518 8.5 9.5 9.0 3.9 7591 chr2L 10156277 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163868 intron CG44153 - chr2L_39_10160001 chr2L_10160001 RAL-223 354 chr2L 10177362 10177396 chr2L 10177492 10177521 17 129 9.0 11.0 10.0 1.5 159 chr2L 10177362 intron CG44153 - chr2L 10177442 intron CG44153 - chr2L 10177521 intron CG44153 - chr2L_17_10175001 chr2L_10175001 RAL-223 355 chr2L 10204464 10204524 chr2L 10204597 10204657 18 133 6.5 7.5 7.0 2.2 193 chr2L 10204464 intergenic CG34159 -,CG5734 - chr2L 10204560 intergenic CG5734 -,CG34159 - chr2L 10204657 intergenic CG5734 -,CG34159 - chr2L_18_10200001 chr2L_10200001 RAL-223 356 chr2L 10209799 10209817 chr2L 10209926 10209944 10 127 16.5 3.0 9.8 0.9 145 chr2L 10209799 intergenic CR44845 +,CG5727 -,CG5731 - chr2L 10209872 3` UTR CG5727 - chr2L 10209944 3` UTR CG5727 - chr2L_10_10205001 chr2L_10205001 RAL-223 357 chr2L 10281643 10281684 chr2L 10281788 10281840 9 147 0.0 8.5 4.2 1.7 197 chr2L 10281643 intergenic CG5604 - chr2L 10281742 intergenic CG5604 - chr2L 10281840 intergenic CG5604 - chr2L_9_10280001 chr2L_10280001 RAL-223 358 chr2L 10294629 10294690 chr2L 10294765 10294826 18 136 10.5 8.0 9.2 1.8 197 chr2L 10294629 exon Hand - chr2L 10294728 intron Hand - chr2L 10294826 intron Hand - chr2L_18_10290001 chr2L_10290001 RAL-223 359 chr2L 10397491 10397562 chr2L 10397621 10397692 31 130 7.0 12.0 9.5 3.0 201 chr2L 10397491 intron Cnot4 + chr2L 10397592 intron Cnot4 + chr2L 10397692 intron Cnot4 + chr2L_31_10395001 chr2L_10395001 RAL-223 360 chr2L 10456615 10456830 chr2L 10456745 10456978 8 134 7.0 8.0 7.5 0.9 363 chr2L 10456615 intron CG5322 - chr2L 10456796 intron CG5322 - chr2L 10456978 intron CG5322 - chr2L_8_10455001 chr2L_10455001 RAL-223 361 chr2L 10458182 10458204 chr2L 10458327 10458350 4 146 0.0 5.5 2.8 1.1 168 chr2L 10458182 intron LM408 + chr2L 10458266 intron LM408 + chr2L 10458350 intron LM408 + chr2L_4_10455001 chr2L_10455001 RAL-223 362 chr2L 10490231 10490304 chr2L 10490363 10490435 24 131 10.0 9.0 9.5 2.3 204 chr2L 10490231 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490333 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490435 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_24_10490001 chr2L_10490001 RAL-223 363 chr2L 10508450 10508459 chr2L 10511427 10511436 8 2977 49.5 68.5 59.0 0.1 2986 chr2L 10508450 exon CG7384 - chr2L 10509943 exon CG7384 - chr2L 10511436 3` UTR,3` UTR CG45083 -,Fatp - chr2L_8_10505001 chr2L_10505001 RAL-223 364 chr2L 10540821 10540880 chr2L 10540949 10541008 24 127 4.5 7.5 6.0 3.4 187 chr2L 10540821 intergenic not near genes chr2L 10540914 intergenic not near genes chr2L 10541008 intergenic not near genes chr2L_24_10540001 chr2L_10540001 RAL-223 365 chr2L 10562274 10562330 chr2L 10562406 10562420 14 128 9.0 3.5 6.2 1.9 146 chr2L 10562274 intron Trim9 + chr2L 10562347 intron Trim9 + chr2L 10562420 intron Trim9 + chr2L_14_10560001 chr2L_10560001 RAL-223 366 chr2L 10563869 10563940 chr2L 10564012 10564083 23 142 10.0 10.5 10.2 2.1 214 chr2L 10563869 intron Trim9 + chr2L 10563976 intron Trim9 + chr2L 10564083 intron Trim9 + chr2L_23_10560001 chr2L_10560001 RAL-223 367 chr2L 10571916 10571964 chr2L 10572096 10572143 16 180 5.0 13.0 9.0 1.6 227 chr2L 10571916 intron Trim9 + chr2L 10572030 intron Trim9 + chr2L 10572143 intron Trim9 + chr2L_16_10570001 chr2L_10570001 RAL-223 368 chr2L 10576218 10576220 chr2L 10576349 10576351 5 131 27.0 11.5 19.2 0.2 133 chr2L 10576218 intron,3` UTR Trim9 +,w-cup - chr2L 10576284 intron,3` UTR Trim9 +,w-cup - chr2L 10576351 intron,3` UTR Trim9 +,w-cup - chr2L_5_10575001 chr2L_10575001 RAL-223 369 chr2L 10576225 10576282 chr2L 10576346 10576413 26 131 11.5 10.5 11.0 2.2 188 chr2L 10576225 intron,3` UTR Trim9 +,w-cup - chr2L 10576319 intron,3` UTR Trim9 +,w-cup - chr2L 10576413 intron,3` UTR Trim9 +,w-cup - chr2L_26_10575001 chr2L_10575001 RAL-223 370 chr2L 10580742 10580822 chr2L 10580873 10580953 27 131 7.5 7.0 7.2 3.3 211 chr2L 10580742 intron Trim9 + chr2L 10580848 intron Trim9 + chr2L 10580953 intron Trim9 + chr2L_27_10580001 chr2L_10580001 RAL-223 371 chr2L 10592797 10592860 chr2L 10600509 10600574 opus 22 7712 9.0 5.5 7.2 2.7 7777 chr2L 10592797 intron Trim9 + chr2L 10596686 intron Trim9 + chr2L 10600574 intron Trim9 + chr2L_22_10595001 chr2L_10595001 RAL-223 372 chr2L 10604166 10604213 chr2L 10604298 10604345 12 128 6.5 2.5 4.5 2.2 179 chr2L 10604166 intron Trim9 + chr2L 10604256 intron Trim9 + chr2L 10604345 intron Trim9 + chr2L_12_10600001 chr2L_10600001 RAL-223 373 chr2L 10635935 10636012 chr2L 10636146 10636219 8 208 8.5 0.0 4.2 1.5 284 chr2L 10635935 intron CG7329 - chr2L 10636077 intron CG7329 - chr2L 10636219 intron CG7329 - chr2L_8_10635001 chr2L_10635001 RAL-223 374 chr2L 10686134 10686146 chr2L 10686269 10686281 4 135 8.0 0.0 4.0 0.8 147 chr2L 10686134 3` UTR CG7296 - chr2L 10686208 3` UTR CG7296 - chr2L 10686281 3` UTR CG7296 - chr2L_4_10685001 chr2L_10685001 RAL-223 375 chr2L 10688498 10688560 chr2L 10688624 10688686 12 126 2.0 4.5 3.2 2.9 188 chr2L 10688498 intergenic CG7294 - chr2L 10688592 intergenic CG7294 - chr2L 10688686 intergenic CG7294 - chr2L_12_10685001 chr2L_10685001 RAL-223 376 chr2L 10764779 10764841 chr2L 10764920 10764982 29 140 10.5 5.5 8.0 3.2 203 chr2L 10764779 exon CG6495 + chr2L 10764880 3` UTR CG6495 + chr2L 10764982 intergenic CG6495 +,UbcD2 - chr2L_29_10760001 chr2L_10760001 RAL-223 377 chr2L 10787933 10788024 chr2L 10788076 10788150 18 138 2.0 12.5 7.2 2.2 217 chr2L 10787933 intron CG31869 - chr2L 10788042 intron CG31869 - chr2L 10788150 intron CG31869 - chr2L_18_10785001 chr2L_10785001 RAL-223 378 chr2L 10836706 10836777 chr2L 10836847 10836906 18 133 0.0 7.5 3.8 3.8 200 chr2L 10836706 intron Nos - chr2L 10836806 intron Nos - chr2L 10836906 intron Nos - chr2L_18_10835001 chr2L_10835001 RAL-223 379 chr2L 10847029 10847090 chr2L 10847158 10847219 27 127 8.0 9.5 8.8 2.8 190 chr2L 10847029 5` UTR Porin2 - chr2L 10847124 intergenic Porin2 -,porin - chr2L 10847219 intergenic Porin2 -,porin - chr2L_27_10845001 chr2L_10845001 RAL-223 380 chr2L 10850914 10850991 chr2L 10851044 10851102 23 130 6.5 4.0 5.2 3.7 188 chr2L 10850914 intron CG43129 + chr2L 10851008 intron CG43129 + chr2L 10851102 intron CG43129 + chr2L_23_10850001 chr2L_10850001 RAL-223 381 chr2L 10862804 10862864 chr2L 10864454 10864518 Rt1c 11 1660 7.5 7.5 7.5 1.3 1714 chr2L 10862804 3` UTR CR43807 - chr2L 10863661 intron CR43807 - chr2L 10864518 3` UTR CR43807 - chr2L_11_10860001 chr2L_10860001 RAL-223 382 chr2L 10873388 10873405 chr2L 10873608 10873625 8 220 6.0 6.0 6.0 1.1 237 chr2L 10873388 intergenic not near genes chr2L 10873506 intergenic not near genes chr2L 10873625 intergenic not near genes chr2L_8_10870001 chr2L_10870001 RAL-223 383 chr2L 10876525 10876569 chr2L 10883631 10883675 297 13 7106 8.0 13.0 10.5 1.1 7150 chr2L 10876525 intergenic not near genes chr2L 10880100 intergenic not near genes chr2L 10883675 intergenic not near genes chr2L_13_10880001 chr2L_10880001 RAL-223 384 chr2L 10905557 10905627 chr2L 10905694 10905764 23 137 5.0 5.5 5.2 3.7 207 chr2L 10905557 intergenic not near genes chr2L 10905660 intergenic not near genes chr2L 10905764 intergenic not near genes chr2L_23_10905001 chr2L_10905001 RAL-223 385 chr2L 10912943 10913001 chr2L 10913074 10913130 21 126 8.5 11.0 9.8 1.9 187 chr2L 10912943 intergenic not near genes chr2L 10913036 intergenic not near genes chr2L 10913130 intergenic not near genes chr2L_21_10910001 chr2L_10910001 RAL-223 386 chr2L 10946910 10946934 chr2L 10956175 10956199 roo 9 9265 16.0 15.0 15.5 0.5 9289 chr2L 10946910 intron dpr2 - chr2L 10951554 intron dpr2 - chr2L 10956199 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-223 387 chr2L 10946936 10946972 chr2L 10956165 10956232 roo 16 9261 9.0 11.5 10.2 1.4 9296 chr2L 10946936 intron dpr2 - chr2L 10951584 intron dpr2 - chr2L 10956232 intron dpr2 - chr2L_16_10950001 chr2L_10950001 RAL-223 388 chr2L 10986994 10987055 chr2L 10988240 10988301 19 1247 15.5 60.5 38.0 0.5 1307 chr2L 10986994 intron piwi - chr2L 10987648 intergenic CG12253 +,piwi - chr2L 10988301 exon CG12253 + chr2L_19_10985001 chr2L_10985001 RAL-223 389 chr2L 11076541 11076584 chr2L 11076668 11076711 15 126 2.0 12.0 7.0 1.9 170 chr2L 11076541 3` UTR AstC - chr2L 11076626 3` UTR AstC - chr2L 11076711 3` UTR AstC - chr2L_15_11075001 chr2L_11075001 RAL-223 390 chr2L 11183747 11183810 chr2L 11183893 11183956 22 146 7.0 10.5 8.8 2.2 209 chr2L 11183747 intron Ca-beta - chr2L 11183852 intron Ca-beta - chr2L 11183956 intron Ca-beta - chr2L_22_11180001 chr2L_11180001 RAL-223 391 chr2L 11193525 11193589 chr2L 11193658 11193733 7 135 0.0 6.0 3.0 1.8 208 chr2L 11193525 intron Ca-beta - chr2L 11193629 intron Ca-beta - chr2L 11193733 intron Ca-beta - chr2L_7_11190001 chr2L_11190001 RAL-223 392 chr2L 11224010 11224085 chr2L 11224170 11224246 30 161 5.0 6.5 5.8 4.4 236 chr2L 11224010 intron ab + chr2L 11224128 intron ab + chr2L 11224246 intron ab + chr2L_30_11220001 chr2L_11220001 RAL-223 393 chr2L 11248521 11248536 chr2L 11248654 11248669 6 132 21.5 8.5 15.0 0.4 148 chr2L 11248521 intron ab + chr2L 11248595 intron ab + chr2L 11248669 intron ab + chr2L_6_11245001 chr2L_11245001 RAL-223 394 chr2L 11248546 11248587 chr2L 11248653 11248720 18 125 10.5 8.0 9.2 1.8 174 chr2L 11248546 intron ab + chr2L 11248633 intron ab + chr2L 11248720 intron ab + chr2L_18_11245001 chr2L_11245001 RAL-223 395 chr2L 11292328 11292404 chr2L 11292459 11292536 23 131 8.0 7.0 7.5 2.7 208 chr2L 11292328 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292536 intergenic not near genes chr2L_23_11290001 chr2L_11290001 RAL-223 396 chr2L 11308959 11309032 chr2L 11309117 11309191 22 156 8.0 4.5 6.2 3.1 232 chr2L 11308959 intergenic not near genes chr2L 11309075 intergenic not near genes chr2L 11309191 intergenic not near genes chr2L_22_11305001 chr2L_11305001 RAL-223 397 chr2L 11315219 11315272 chr2L 11317673 11317726 G2 19 2452 8.5 9.0 8.8 1.9 2507 chr2L 11315219 intergenic not near genes chr2L 11316472 intergenic not near genes chr2L 11317726 intergenic not near genes chr2L_19_11315001 chr2L_11315001 RAL-223 398 chr2L 11356359 11356422 chr2L 11356520 11356583 27 161 9.5 2.0 5.8 4.0 224 chr2L 11356359 intergenic not near genes chr2L 11356471 intergenic not near genes chr2L 11356583 intergenic not near genes chr2L_27_11355001 chr2L_11355001 RAL-223 399 chr2L 11379901 11379951 chr2L 11380033 11380083 7 132 12.0 0.0 6.0 1.0 182 chr2L 11379901 intergenic not near genes chr2L 11379992 intergenic not near genes chr2L 11380083 intergenic not near genes chr2L_7_11375001 chr2L_11375001 RAL-223 400 chr2L 11380588 11380630 chr2L 11380700 11380757 10 120 4.5 11.0 7.8 1.1 169 chr2L 11380588 intergenic not near genes chr2L 11380672 intergenic not near genes chr2L 11380757 intergenic not near genes chr2L_10_11380001 chr2L_11380001 RAL-223 401 chr2L 11395000 11395050 chr2L 11395132 11395182 22 131 3.0 9.5 6.2 3.1 182 chr2L 11395000 intergenic not near genes chr2L 11395091 intergenic not near genes chr2L 11395182 intergenic not near genes chr2L_22_11395001 chr2L_11395001 RAL-223 402 chr2L 11399474 11399531 chr2L 11399604 11399658 16 128 6.0 0.0 3.0 4.0 184 chr2L 11399474 intergenic not near genes chr2L 11399566 intergenic not near genes chr2L 11399658 intergenic not near genes chr2L_16_11395001 chr2L_11395001 RAL-223 403 chr2L 11418614 11418626 chr2L 11418737 11418755 8 128 14.5 6.0 10.2 0.7 141 chr2L 11418614 intergenic not near genes chr2L 11418684 intergenic not near genes chr2L 11418755 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-223 404 chr2L 11418630 11418667 chr2L 11418734 11418796 16 127 11.0 5.5 8.2 1.7 166 chr2L 11418630 intergenic not near genes chr2L 11418713 intergenic not near genes chr2L 11418796 intergenic not near genes chr2L_16_11415001 chr2L_11415001 RAL-223 405 chr2L 11418672 11418686 chr2L 11418801 11418815 6 129 6.5 19.0 12.8 0.4 143 chr2L 11418672 intergenic not near genes chr2L 11418744 intergenic not near genes chr2L 11418815 intergenic not near genes chr2L_6_11415001 chr2L_11415001 RAL-223 406 chr2L 11537183 11537205 chr2L 11537294 11537302 4 112 3.0 11.0 7.0 0.5 119 chr2L 11537183 intergenic CG43438 + chr2L 11537242 intergenic CG43438 + chr2L 11537302 intergenic CG43438 + chr2L_4_11535001 chr2L_11535001 RAL-223 407 chr2L 11537704 11537776 chr2L 11537871 11537943 20 166 9.5 5.0 7.2 2.4 239 chr2L 11537704 intergenic not near genes chr2L 11537824 intergenic not near genes chr2L 11537943 intergenic not near genes chr2L_20_11535001 chr2L_11535001 RAL-223 408 chr2L 11540546 11540601 chr2L 11547998 11548053 Tabor 9 7452 6.5 7.0 6.8 1.2 7507 chr2L 11540546 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548053 intergenic not near genes chr2L_9_11540001 chr2L_11540001 RAL-223 409 chr2L 11550593 11550660 chr2L 11550732 11550799 22 139 6.0 6.5 6.2 3.1 206 chr2L 11550593 intergenic not near genes chr2L 11550696 intergenic not near genes chr2L 11550799 intergenic not near genes chr2L_22_11550001 chr2L_11550001 RAL-223 410 chr2L 11555361 11555430 chr2L 11555531 11555599 26 169 6.5 3.0 4.8 4.5 238 chr2L 11555361 intergenic not near genes chr2L 11555480 intergenic not near genes chr2L 11555599 intergenic not near genes chr2L_26_11555001 chr2L_11555001 RAL-223 411 chr2L 11563596 11563654 chr2L 11568850 11568907 copia 20 5254 5.0 8.5 6.8 2.6 5311 chr2L 11563596 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568907 intergenic not near genes chr2L_20_11565001 chr2L_11565001 RAL-223 412 chr2L 11610497 11610574 chr2L 11610626 11610702 17 128 6.5 5.0 5.8 2.5 205 chr2L 11610497 intron kek2 + chr2L 11610600 intron,3` UTR kek2 +,spag4 - chr2L 11610702 intron,intron kek2 +,spag4 - chr2L_17_11610001 chr2L_11610001 RAL-223 413 chr2L 11614028 11614062 chr2L 11615573 11615607 hopper2 10 1544 12.0 14.5 13.2 0.7 1579 chr2L 11614028 intron kek2 + chr2L 11614818 intron kek2 + chr2L 11615607 intron kek2 + chr2L_10_11610001 chr2L_11610001 RAL-223 414 chr2L 11614068 11614085 chr2L 11615555 11615572 hopper2 7 1526 7.0 10.5 8.8 0.7 1504 chr2L 11614068 intron kek2 + chr2L 11614820 intron kek2 + chr2L 11615572 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-223 415 chr2L 11675515 11675577 chr2L 11675645 11675707 6 130 4.5 0.0 2.2 1.9 192 chr2L 11675515 intergenic not near genes chr2L 11675611 intergenic not near genes chr2L 11675707 intergenic not near genes chr2L_6_11675001 chr2L_11675001 RAL-223 416 chr2L 11708060 11708104 chr2L 11708480 11708525 20 420 4.5 7.5 6.0 2.9 465 chr2L 11708060 intergenic not near genes chr2L 11708292 intergenic not near genes chr2L 11708525 intergenic not near genes chr2L_20_11705001 chr2L_11705001 RAL-223 417 chr2L 11713464 11713531 chr2L 11720982 11721049 blood 28 7518 4.5 10.5 7.5 3.3 7585 chr2L 11713464 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721049 intergenic CR44143 + chr2L_28_11715001 chr2L_11715001 RAL-223 418 chr2L 11750275 11750340 chr2L 11750611 11750676 29 336 4.5 6.0 5.2 4.7 401 chr2L 11750275 intergenic not near genes chr2L 11750476 intergenic not near genes chr2L 11750676 intergenic not near genes chr2L_29_11750001 chr2L_11750001 RAL-223 419 chr2L 11841297 11841365 chr2L 11841444 11841522 22 152 5.5 0.0 2.8 5.8 225 chr2L 11841297 intron Pde1c - chr2L 11841410 intron Pde1c - chr2L 11841522 intron Pde1c - chr2L_22_11840001 chr2L_11840001 RAL-223 420 chr2L 11862316 11862386 chr2L 11862459 11862529 34 143 4.0 6.5 5.2 5.5 213 chr2L 11862316 intron Pde1c - chr2L 11862422 intron Pde1c - chr2L 11862529 intron Pde1c - chr2L_34_11860001 chr2L_11860001 RAL-223 421 chr2L 11866955 11867005 chr2L 11867117 11867167 16 162 12.0 6.5 9.2 1.6 212 chr2L 11866955 intron Pde1c - chr2L 11867061 intron Pde1c - chr2L 11867167 intron Pde1c - chr2L_16_11865001 chr2L_11865001 RAL-223 422 chr2L 11870945 11870978 chr2L 11871073 11871106 8 128 4.0 6.0 5.0 1.3 161 chr2L 11870945 intron Pde1c - chr2L 11871026 intron Pde1c - chr2L 11871106 intron Pde1c - chr2L_8_11870001 chr2L_11870001 RAL-223 423 chr2L 11886406 11886450 chr2L 11886555 11886599 19 149 11.5 5.5 8.5 2.0 193 chr2L 11886406 intron Pde1c - chr2L 11886502 intron Pde1c - chr2L 11886599 intron Pde1c - chr2L_19_11885001 chr2L_11885001 RAL-223 424 chr2L 11889379 11889446 chr2L 11889770 11889839 26 393 6.0 5.5 5.8 3.8 460 chr2L 11889379 intron Pde1c - chr2L 11889609 intron Pde1c - chr2L 11889839 intron Pde1c - chr2L_26_11885001 chr2L_11885001 RAL-223 425 chr2L 11892496 11892561 chr2L 11892635 11892700 24 139 7.0 4.0 5.5 3.7 204 chr2L 11892496 intron Pde1c - chr2L 11892598 intron Pde1c - chr2L 11892700 intron Pde1c - chr2L_24_11890001 chr2L_11890001 RAL-223 426 chr2L 11934863 11934941 chr2L 11935093 11935172 24 230 4.5 5.0 4.8 4.1 309 chr2L 11934863 exon Or33a + chr2L 11935018 exon Or33a + chr2L 11935172 exon Or33a + chr2L_24_11935001 chr2L_11935001 RAL-223 427 chr2L 11951964 11951993 chr2L 11952102 11952131 16 138 5.5 10.5 8.0 1.8 167 chr2L 11951964 intergenic CR43314 - chr2L 11952048 intergenic CR43314 - chr2L 11952131 intergenic CR43314 - chr2L_16_11950001 chr2L_11950001 RAL-223 428 chr2L 11986508 11986556 chr2L 11987005 11987053 5 495 38.5 17.0 27.8 0.2 545 chr2L 11986508 exon CG6686 - chr2L 11986780 exon CG6686 - chr2L 11987053 exon CG6686 - chr2L_5_11985001 chr2L_11985001 RAL-223 429 chr2L 12026725 12026772 chr2L 12026964 12027003 7 233 5.0 0.0 2.5 2.0 278 chr2L 12026725 intergenic not near genes chr2L 12026864 intergenic not near genes chr2L 12027003 intergenic dmGlut + chr2L_7_12025001 chr2L_12025001 RAL-223 430 chr2L 12067296 12067347 chr2L 12074398 12074449 297 23 7102 10.5 10.5 10.5 2.0 7153 chr2L 12067296 intergenic not near genes chr2L 12070872 intergenic not near genes chr2L 12074449 intergenic not near genes chr2L_23_12070001 chr2L_12070001 RAL-223 431 chr2L 12112025 12112046 chr2L 12112186 12112207 6 159 0.0 14.5 7.2 0.7 182 chr2L 12112025 3` UTR Phae2 + chr2L 12112116 3` UTR Phae2 + chr2L 12112207 3` UTR Phae2 + chr2L_6_12110001 chr2L_12110001 RAL-223 432 chr2L 12157561 12157573 chr2L 12157690 12157702 7 129 22.5 6.5 14.5 0.5 141 chr2L 12157561 intron CG31760 + chr2L 12157632 intron CG31760 + chr2L 12157702 intron CG31760 + chr2L_7_12155001 chr2L_12155001 RAL-223 433 chr2L 12157584 12157630 chr2L 12157713 12157747 12 129 9.0 7.5 8.2 1.3 163 chr2L 12157584 intron CG31760 + chr2L 12157666 intron CG31760 + chr2L 12157747 intron CG31760 + chr2L_12_12155001 chr2L_12155001 RAL-223 434 chr2L 12158463 12158541 chr2L 12158705 12158783 28 242 2.0 5.5 3.8 5.8 320 chr2L 12158463 intron CG31760 + chr2L 12158623 intron CG31760 + chr2L 12158783 intron CG31760 + chr2L_28_12155001 chr2L_12155001 RAL-223 435 chr2L 12169503 12169554 chr2L 12169633 12169684 14 130 12.0 0.0 6.0 2.0 181 chr2L 12169503 3` UTR CG31760 + chr2L 12169594 3` UTR CG31760 + chr2L 12169684 3` UTR CG31760 + chr2L_14_12165001 chr2L_12165001 RAL-223 436 chr2L 12171320 12171329 chr2L 12171478 12171487 5 158 0.5 0.0 0.2 4.2 167 chr2L 12171320 3` UTR CG6583 - chr2L 12171404 3` UTR CG6583 - chr2L 12171487 3` UTR CG6583 - chr2L_5_12170001 chr2L_12170001 RAL-223 437 chr2L 12176163 12176244 chr2L 12176294 12176375 25 131 6.0 6.5 6.2 3.5 212 chr2L 12176163 intron,intron aret +,atilla - chr2L 12176269 intron,intron aret +,atilla - chr2L 12176375 intron,intron aret +,atilla - chr2L_25_12175001 chr2L_12175001 RAL-223 438 chr2L 12183894 12183958 chr2L 12184182 12184240 18 286 7.0 7.0 7.0 2.2 346 chr2L 12183894 intron aret + chr2L 12184067 intron aret + chr2L 12184240 intron aret + chr2L_18_12180001 chr2L_12180001 RAL-223 439 chr2L 12205004 12205015 chr2L 12205167 12205178 9 163 0.5 12.5 6.5 1.2 174 chr2L 12205004 intron aret + chr2L 12205091 intron aret + chr2L 12205178 intron aret + chr2L_9_12205001 chr2L_12205001 RAL-223 440 chr2L 12209998 12210045 chr2L 12210136 12210183 14 133 6.0 9.0 7.5 1.6 185 chr2L 12209998 intron,3` UTR aret +,CG31759 + chr2L 12210090 intron aret + chr2L 12210183 intron aret + chr2L_14_12210001 chr2L_12210001 RAL-223 441 chr2L 12214012 12214029 chr2L 12214163 12214179 5 148 16.0 0.0 8.0 0.6 167 chr2L 12214012 intron aret + chr2L 12214096 intron aret + chr2L 12214179 intron aret + chr2L_5_12210001 chr2L_12210001 RAL-223 442 chr2L 12214032 12214094 chr2L 12214161 12214246 14 148 3.0 0.0 1.5 5.6 214 chr2L 12214032 intron aret + chr2L 12214139 intron aret + chr2L 12214246 intron aret + chr2L_14_12210001 chr2L_12210001 RAL-223 443 chr2L 12244859 12244934 chr2L 12244997 12245067 7 136 5.5 0.0 2.8 1.8 208 chr2L 12244859 intron aret + chr2L 12244963 intron aret + chr2L 12245067 intron aret + chr2L_7_12240001 chr2L_12240001 RAL-223 444 chr2L 12253987 12253999 chr2L 12254129 12254141 5 142 13.0 0.0 6.5 0.7 154 chr2L 12253987 intron aret + chr2L 12254064 intron aret + chr2L 12254141 intron aret + chr2L_5_12250001 chr2L_12250001 RAL-223 445 chr2L 12269361 12269397 chr2L 12269489 12269525 12 128 11.0 5.5 8.2 1.3 164 chr2L 12269361 intron aret + chr2L 12269443 intron aret + chr2L 12269525 intron aret + chr2L_12_12265001 chr2L_12265001 RAL-223 446 chr2L 12275146 12275170 chr2L 12275283 12275307 16 137 9.5 6.5 8.0 1.8 161 chr2L 12275146 intron aret + chr2L 12275226 intron aret + chr2L 12275307 intron aret + chr2L_16_12275001 chr2L_12275001 RAL-223 447 chr2L 12286900 12286954 chr2L 12287031 12287085 31 131 8.5 0.0 4.2 6.0 185 chr2L 12286900 intron aret + chr2L 12286992 intron aret + chr2L 12287085 intron aret + chr2L_31_12285001 chr2L_12285001 RAL-223 448 chr2L 12294200 12294276 chr2L 12294332 12294408 30 132 5.5 3.5 4.5 5.5 208 chr2L 12294200 intron aret + chr2L 12294304 intron aret + chr2L 12294408 intron aret + chr2L_30_12290001 chr2L_12290001 RAL-223 449 chr2L 12305363 12305437 chr2L 12305501 12305575 31 137 6.5 6.0 6.2 4.3 212 chr2L 12305363 intron aret + chr2L 12305469 intron aret + chr2L 12305575 intron aret + chr2L_31_12305001 chr2L_12305001 RAL-223 450 chr2L 12398634 12398671 chr2L 12398773 12398810 13 134 10.5 13.5 12.0 1.0 176 chr2L 12398634 exon Pkd2 + chr2L 12398722 exon Pkd2 + chr2L 12398810 exon Pkd2 + chr2L_13_12395001 chr2L_12395001 RAL-223 451 chr2L 12454083 12454150 chr2L 12454213 12454280 26 127 9.0 6.0 7.5 3.1 197 chr2L 12454083 intergenic not near genes chr2L 12454182 intergenic not near genes chr2L 12454280 intergenic not near genes chr2L_26_12450001 chr2L_12450001 RAL-223 452 chr2L 12466206 12466237 chr2L 12466335 12466366 7 129 1.5 10.5 6.0 1.0 160 chr2L 12466206 intron bun - chr2L 12466286 intron bun - chr2L 12466366 intron bun - chr2L_7_12465001 chr2L_12465001 RAL-223 453 chr2L 12474901 12474963 chr2L 12475129 12475191 24 228 13.0 0.0 6.5 3.2 290 chr2L 12474901 intron bun - chr2L 12475046 intron bun - chr2L 12475191 intron bun - chr2L_24_12475001 chr2L_12475001 RAL-223 454 chr2L 12499001 12499016 chr2L 12499128 12499143 8 127 0.0 8.0 4.0 1.6 142 chr2L 12499001 intron bun - chr2L 12499072 intron bun - chr2L 12499143 intron bun - chr2L_8_12495001 chr2L_12495001 RAL-223 455 chr2L 12500580 12500616 chr2L 12500706 12500711 13 122 5.5 7.5 6.5 1.7 131 chr2L 12500580 intron bun - chr2L 12500646 intron bun - chr2L 12500711 intron bun - chr2L_13_12500001 chr2L_12500001 RAL-223 456 chr2L 12510078 12510125 chr2L 12510213 12510260 16 134 17.0 13.0 15.0 1.0 182 chr2L 12510078 intron bun - chr2L 12510169 intron bun - chr2L 12510260 intron bun - chr2L_16_12510001 chr2L_12510001 RAL-223 457 chr2L 12529186 12529250 chr2L 12529388 12529452 28 202 6.5 9.0 7.8 3.2 266 chr2L 12529186 intron bun - chr2L 12529319 intron bun - chr2L 12529452 intron bun - chr2L_28_12525001 chr2L_12525001 RAL-223 458 chr2L 12547416 12547448 chr2L 12547550 12547582 12 134 1.5 0.0 0.8 6.7 166 chr2L 12547416 intergenic not near genes chr2L 12547499 intergenic not near genes chr2L 12547582 intergenic not near genes chr2L_12_12545001 chr2L_12545001 RAL-223 459 chr2L 12558271 12558344 chr2L 12565450 12565523 HMS-Beagle 30 7178 6.0 5.0 5.5 4.6 7252 chr2L 12558271 intergenic not near genes chr2L 12561897 intergenic not near genes chr2L 12565523 intergenic not near genes chr2L_30_12560001 chr2L_12560001 RAL-223 460 chr2L 12576669 12576673 chr2L 12576798 12576802 4 129 10.0 8.0 9.0 0.4 133 chr2L 12576669 intergenic not near genes chr2L 12576736 intergenic not near genes chr2L 12576802 intergenic not near genes chr2L_4_12575001 chr2L_12575001 RAL-223 461 chr2L 12619856 12619906 chr2L 12619979 12620032 21 124 11.0 8.5 9.8 1.9 176 chr2L 12619856 intron,intron nub +,Ref2 - chr2L 12619944 intron,intron nub +,Ref2 - chr2L 12620032 intron,intron nub +,Ref2 - chr2L_21_12615001 chr2L_12615001 RAL-223 462 chr2L 12680883 12680893 chr2L 12680998 12681018 5 124 20.5 6.0 13.2 0.4 135 chr2L 12680883 intron pdm2 + chr2L 12680950 intron pdm2 + chr2L 12681018 intron pdm2 + chr2L_5_12680001 chr2L_12680001 RAL-223 463 chr2L 12680913 12680944 chr2L 12680992 12681074 15 122 12.0 8.0 10.0 1.4 161 chr2L 12680913 intron pdm2 + chr2L 12680994 intron pdm2 + chr2L 12681074 intron pdm2 + chr2L_15_12680001 chr2L_12680001 RAL-223 464 chr2L 12699807 12699870 chr2L 12699927 12699996 7 112 5.5 7.0 6.2 1.0 189 chr2L 12699807 exon CG17036 - chr2L 12699902 exon CG17036 - chr2L 12699996 exon CG17036 - chr2L_7_12695001 chr2L_12695001 RAL-223 465 chr2L 12717345 12717361 chr2L 12717484 12717500 7 139 13.5 17.0 15.2 0.4 155 chr2L 12717345 intron Pih1D1 - chr2L 12717422 intron Pih1D1 - chr2L 12717500 intron Pih1D1 - chr2L_7_12715001 chr2L_12715001 RAL-223 466 chr2L 12731016 12731086 chr2L 12735833 12735903 F-element 27 4817 8.0 9.5 8.8 2.8 4887 chr2L 12731016 intron MRP + chr2L 12733460 intron MRP + chr2L 12735903 intron MRP + chr2L_27_12730001 chr2L_12730001 RAL-223 467 chr2L 12736630 12736690 chr2L 12736756 12736816 23 125 9.0 6.5 7.8 2.6 186 chr2L 12736630 intron MRP + chr2L 12736723 intron MRP + chr2L 12736816 intron MRP + chr2L_23_12735001 chr2L_12735001 RAL-223 468 chr2L 12739129 12739197 chr2L 12743960 12744028 Doc 27 4830 8.5 9.0 8.8 2.8 4899 chr2L 12739129 exon MRP + chr2L 12741578 intron MRP + chr2L 12744028 exon MRP + chr2L_27_12740001 chr2L_12740001 RAL-223 469 chr2L 12751270 12751338 chr2L 12751403 12751471 28 132 7.5 11.0 9.2 2.7 201 chr2L 12751270 intergenic not near genes chr2L 12751370 intergenic not near genes chr2L 12751471 intergenic not near genes chr2L_28_12750001 chr2L_12750001 RAL-223 470 chr2L 12763782 12763869 chr2L 12764043 12764131 BS 15 262 0.0 0.0 0.0 15.0 349 chr2L 12763782 intergenic not near genes chr2L 12763956 intergenic not near genes chr2L 12764131 intergenic not near genes chr2L_15_12760001 chr2L_12760001 RAL-223 471 chr2L 12781759 12781811 chr2L 12789252 12789304 Quasimodo 24 7493 15.0 8.5 11.8 1.9 7545 chr2L 12781759 intergenic not near genes chr2L 12785532 intergenic not near genes chr2L 12789304 intergenic not near genes chr2L_24_12785001 chr2L_12785001 RAL-223 472 chr2L 12791568 12791624 chr2L 12795293 12795349 F-element 17 3725 5.5 12.5 9.0 1.7 3781 chr2L 12791568 intergenic not near genes chr2L 12793458 intergenic not near genes chr2L 12795349 intergenic not near genes chr2L_17_12790001 chr2L_12790001 RAL-223 473 chr2L 12807400 12807454 chr2L 12807529 12807583 20 129 11.5 5.5 8.5 2.1 183 chr2L 12807400 intergenic CR43818 - chr2L 12807492 intergenic CR43818 - chr2L 12807583 intergenic CR43818 - chr2L_20_12805001 chr2L_12805001 RAL-223 474 chr2L 12826550 12826625 chr2L 12826689 12826764 27 139 4.5 6.5 5.5 4.2 214 chr2L 12826550 intergenic not near genes chr2L 12826657 intergenic not near genes chr2L 12826764 intergenic not near genes chr2L_27_12825001 chr2L_12825001 RAL-223 475 chr2L 12835508 12835531 chr2L 12835667 12835690 8 159 18.0 2.0 10.0 0.7 182 chr2L 12835508 intergenic not near genes chr2L 12835599 intergenic not near genes chr2L 12835690 intergenic not near genes chr2L_8_12835001 chr2L_12835001 RAL-223 476 chr2L 12835532 12835569 chr2L 12835666 12835728 7 153 11.0 2.0 6.5 0.9 196 chr2L 12835532 intergenic not near genes chr2L 12835630 intergenic not near genes chr2L 12835728 intergenic not near genes chr2L_7_12835001 chr2L_12835001 RAL-223 477 chr2L 12835573 12835586 chr2L 12835665 12835745 4 142 7.5 2.0 4.8 0.7 172 chr2L 12835573 intergenic not near genes chr2L 12835659 intergenic not near genes chr2L 12835745 intergenic not near genes chr2L_4_12835001 chr2L_12835001 RAL-223 478 chr2L 12848376 12848457 chr2L 12848518 12848595 23 141 5.5 7.5 6.5 3.1 219 chr2L 12848376 intergenic not near genes chr2L 12848486 intergenic not near genes chr2L 12848595 intergenic not near genes chr2L_23_12845001 chr2L_12845001 RAL-223 479 chr2L 12855290 12855321 chr2L 12855425 12855456 13 135 0.0 11.0 5.5 2.0 166 chr2L 12855290 intergenic not near genes chr2L 12855373 intergenic not near genes chr2L 12855456 intergenic not near genes chr2L_13_12855001 chr2L_12855001 RAL-223 480 chr2L 12861656 12861698 chr2L 12863173 12863215 hobo 16 1516 15.0 7.0 11.0 1.3 1559 chr2L 12861656 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863215 intergenic not near genes chr2L_16_12860001 chr2L_12860001 RAL-223 481 chr2L 12861704 12861730 chr2L 12863171 12863233 hobo 9 1500 5.5 7.0 6.2 1.2 1529 chr2L 12861704 intergenic not near genes chr2L 12862468 intergenic not near genes chr2L 12863233 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-223 482 chr2L 12885638 12885696 chr2L 12885772 12885830 10 134 5.5 6.5 6.0 1.4 192 chr2L 12885638 intergenic not near genes chr2L 12885734 intergenic not near genes chr2L 12885830 intergenic not near genes chr2L_10_12885001 chr2L_12885001 RAL-223 483 chr2L 12888554 12888631 chr2L 12888802 12888878 23 246 8.0 5.0 6.5 3.1 324 chr2L 12888554 intergenic not near genes chr2L 12888716 intergenic not near genes chr2L 12888878 intergenic not near genes chr2L_23_12885001 chr2L_12885001 RAL-223 484 chr2L 12894006 12894051 chr2L 12895488 12895568 hobo 19 1514 7.0 8.5 7.8 2.2 1562 chr2L 12894006 intergenic not near genes chr2L 12894787 intergenic not near genes chr2L 12895568 intergenic not near genes chr2L_19_12890001 chr2L_12890001 RAL-223 485 chr2L 12905425 12905491 chr2L 12905559 12905625 20 134 8.5 9.5 9.0 2.0 200 chr2L 12905425 intergenic not near genes chr2L 12905525 intergenic not near genes chr2L 12905625 intergenic not near genes chr2L_20_12905001 chr2L_12905001 RAL-223 486 chr2L 12933805 12933878 chr2L 12941322 12941395 blood 42 7516 13.0 10.0 11.5 3.4 7590 chr2L 12933805 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941395 intergenic not near genes chr2L_42_12935001 chr2L_12935001 RAL-223 487 chr2L 12949208 12949275 chr2L 12949351 12949417 28 138 13.0 8.5 10.8 2.4 209 chr2L 12949208 intergenic not near genes chr2L 12949312 intergenic not near genes chr2L 12949417 intergenic not near genes chr2L_28_12945001 chr2L_12945001 RAL-223 488 chr2L 12955829 12955864 chr2L 12956079 12956114 10 249 18.0 3.0 10.5 0.9 285 chr2L 12955829 intergenic not near genes chr2L 12955972 intergenic not near genes chr2L 12956114 intergenic not near genes chr2L_10_12955001 chr2L_12955001 RAL-223 489 chr2L 12955867 12955903 chr2L 12956076 12956153 12 244 7.0 2.5 4.8 2.1 286 chr2L 12955867 intergenic not near genes chr2L 12956010 intergenic not near genes chr2L 12956153 intergenic not near genes chr2L_12_12955001 chr2L_12955001 RAL-223 490 chr2L 12965139 12965195 chr2L 12965269 12965325 18 129 11.0 9.5 10.2 1.6 186 chr2L 12965139 intergenic not near genes chr2L 12965232 intergenic not near genes chr2L 12965325 intergenic not near genes chr2L_18_12965001 chr2L_12965001 RAL-223 491 chr2L 12965196 12965216 chr2L 12965267 12965315 8 119 10.5 9.0 9.8 0.7 119 chr2L 12965196 intergenic not near genes chr2L 12965256 intergenic not near genes chr2L 12965315 intergenic not near genes chr2L_8_12965001 chr2L_12965001 RAL-223 492 chr2L 12989010 12989040 chr2L 12989148 12989167 13 136 11.0 12.5 11.8 1.0 157 chr2L 12989010 intergenic not near genes chr2L 12989088 intergenic not near genes chr2L 12989167 intergenic not near genes chr2L_13_12985001 chr2L_12985001 RAL-223 493 chr2L 12989041 12989077 chr2L 12989145 12989215 9 127 8.5 12.0 10.2 0.8 174 chr2L 12989041 intergenic not near genes chr2L 12989128 intergenic not near genes chr2L 12989215 intergenic not near genes chr2L_9_12985001 chr2L_12985001 RAL-223 494 chr2L 13033315 13033391 chr2L 13034289 13034365 14 974 6.5 8.0 7.2 1.7 1050 chr2L 13033315 intron CG9932 - chr2L 13033840 intron CG9932 - chr2L 13034365 intron CG9932 - chr2L_14_13030001 chr2L_13030001 RAL-223 495 chr2L 13036199 13036265 chr2L 13036490 13036557 X-element 29 292 10.5 10.0 10.2 2.6 358 chr2L 13036199 intron CG9932 - chr2L 13036378 intron CG9932 - chr2L 13036557 intron CG9932 - chr2L_29_13035001 chr2L_13035001 RAL-223 496 chr2L 13093970 13094016 chr2L 13094139 13094175 19 167 15.5 7.5 11.5 1.5 205 chr2L 13093970 intergenic not near genes chr2L 13094072 intergenic not near genes chr2L 13094175 intergenic not near genes chr2L_19_13090001 chr2L_13090001 RAL-223 497 chr2L 13139227 13139263 chr2L 13139356 13139392 11 129 0.0 9.0 4.5 2.0 165 chr2L 13139227 intergenic not near genes chr2L 13139310 intergenic not near genes chr2L 13139392 intergenic not near genes chr2L_11_13135001 chr2L_13135001 RAL-223 498 chr2L 13144637 13144717 chr2L 13144767 13144847 27 129 9.5 9.5 9.5 2.6 210 chr2L 13144637 intergenic not near genes chr2L 13144742 intergenic not near genes chr2L 13144847 intergenic not near genes chr2L_27_13140001 chr2L_13140001 RAL-223 499 chr2L 13147724 13147765 chr2L 13147863 13147904 12 139 8.0 4.5 6.2 1.7 180 chr2L 13147724 intergenic not near genes chr2L 13147814 intergenic not near genes chr2L 13147904 intergenic not near genes chr2L_12_13145001 chr2L_13145001 RAL-223 500 chr2L 13204270 13204338 chr2L 13204413 13204487 13 145 8.0 11.0 9.5 1.2 217 chr2L 13204270 exon Pect + chr2L 13204378 intron Pect + chr2L 13204487 intron Pect + chr2L_13_13200001 chr2L_13200001 RAL-223 501 chr2L 13215343 13215410 chr2L 13215668 13215735 18 325 9.5 9.5 9.5 1.7 392 chr2L 13215343 5` UTR kek4 - chr2L 13215539 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215735 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_18_13215001 chr2L_13215001 RAL-223 502 chr2L 13255262 13255296 chr2L 13255455 13255489 11 193 0.0 14.0 7.0 1.4 227 chr2L 13255262 intron CG31728 + chr2L 13255376 intron CG31728 + chr2L 13255489 exon CG31728 + chr2L_11_13255001 chr2L_13255001 RAL-223 503 chr2L 13323182 13323249 chr2L 13323426 13323493 18 244 5.5 8.0 6.8 2.3 311 chr2L 13323182 intron CG43778 - chr2L 13323338 intron CG43778 - chr2L 13323493 intron CG43778 - chr2L_18_13320001 chr2L_13320001 RAL-223 504 chr2L 13351771 13351843 chr2L 13351907 13351979 26 136 7.0 6.5 6.8 3.3 208 chr2L 13351771 exon CG9395 - chr2L 13351875 intron CG9395 - chr2L 13351979 exon CG9395 - chr2L_26_13350001 chr2L_13350001 RAL-223 505 chr2L 13398675 13398743 chr2L 13398805 13398873 21 129 3.5 5.5 4.5 3.8 198 chr2L 13398675 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398774 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398873 3` UTR CR44600 - chr2L_21_13395001 chr2L_13395001 RAL-223 506 chr2L 13405605 13405670 chr2L 13410452 13410517 Doc 30 4847 8.0 15.0 11.5 2.4 4912 chr2L 13405605 exon CG7110 + chr2L 13408061 intron CG7110 + chr2L 13410517 exon CG7110 + chr2L_30_13405001 chr2L_13405001 RAL-223 507 chr2L 13422404 13422489 chr2L 13422554 13422618 6 139 0.0 11.0 5.5 0.9 214 chr2L 13422404 intron CG42784 + chr2L 13422511 intron CG42784 + chr2L 13422618 intron CG42784 + chr2L_6_13420001 chr2L_13420001 RAL-223 508 chr2L 13437299 13437370 chr2L 13437430 13437504 8 133 7.0 0.0 3.5 1.8 205 chr2L 13437299 intron,intron CG42784 +,Tehao + chr2L 13437402 intron,intron CG42784 +,Tehao + chr2L 13437504 intron,intron CG42784 +,Tehao + chr2L_8_13435001 chr2L_13435001 RAL-223 509 chr2L 13449425 13449486 chr2L 13456911 13456972 Quasimodo 22 7486 7.5 12.0 9.8 2.0 7547 chr2L 13449425 intron,intron CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456972 intron CG42784 + chr2L_22_13450001 chr2L_13450001 RAL-223 510 chr2L 13481413 13481464 chr2L 13482070 13482121 jockey 23 655 14.5 10.5 12.5 1.7 708 chr2L 13481413 intron CG42784 + chr2L 13481767 intron CG42784 + chr2L 13482121 intron CG42784 + chr2L_23_13480001 chr2L_13480001 RAL-223 511 chr2L 13560363 13560421 chr2L 13565234 13565292 F-element 13 4871 9.0 8.5 8.8 1.3 4929 chr2L 13560363 intron kuz + chr2L 13562828 intron kuz + chr2L 13565292 intron kuz + chr2L_13_13560001 chr2L_13560001 RAL-223 512 chr2L 13577363 13577380 chr2L 13577491 13577508 10 126 10.5 18.5 14.5 0.6 145 chr2L 13577363 intron kuz + chr2L 13577436 intron kuz + chr2L 13577508 intron kuz + chr2L_10_13575001 chr2L_13575001 RAL-223 513 chr2L 13699510 13699585 chr2L 13699637 13699705 19 126 2.5 6.0 4.2 3.7 195 chr2L 13699510 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699705 intron CG31814 - chr2L_19_13695001 chr2L_13695001 RAL-223 514 chr2L 13719588 13719662 chr2L 13719825 13719897 22 233 8.5 6.0 7.2 2.7 309 chr2L 13719588 intergenic not near genes chr2L 13719742 intergenic not near genes chr2L 13719897 intergenic not near genes chr2L_22_13715001 chr2L_13715001 RAL-223 515 chr2L 13720189 13720211 chr2L 13720327 13720349 12 138 18.5 0.0 9.2 1.2 160 chr2L 13720189 intergenic not near genes chr2L 13720269 intergenic not near genes chr2L 13720349 intergenic not near genes chr2L_12_13720001 chr2L_13720001 RAL-223 516 chr2L 13749162 13749191 chr2L 13749295 13749324 4 133 0.0 3.0 1.5 1.6 162 chr2L 13749162 intron,intron CR44846 +,TM9SF4 + chr2L 13749243 intron,intron CR44846 +,TM9SF4 + chr2L 13749324 intron,intron CR44846 +,TM9SF4 + chr2L_4_13745001 chr2L_13745001 RAL-223 517 chr2L 13761769 13761820 chr2L 13762930 13762981 Doc 14 1161 8.0 8.0 8.0 1.6 1212 chr2L 13761769 intron TM9SF4 + chr2L 13762375 intron TM9SF4 + chr2L 13762981 intron TM9SF4 + chr2L_14_13760001 chr2L_13760001 RAL-223 518 chr2L 13842528 13842587 chr2L 13842655 13842714 23 127 8.0 6.0 7.0 2.9 186 chr2L 13842528 intron CenG1A + chr2L 13842621 intron CenG1A + chr2L 13842714 intron CenG1A + chr2L_23_13840001 chr2L_13840001 RAL-223 519 chr2L 13853045 13853096 chr2L 13862245 13862296 roo 19 9200 13.5 10.5 12.0 1.5 9251 chr2L 13853045 intron CenG1A + chr2L 13857670 intron CenG1A + chr2L 13862296 intron CenG1A + chr2L_19_13855001 chr2L_13855001 RAL-223 520 chr2L 13913547 13913604 chr2L 13913710 13913767 17 163 8.0 14.5 11.2 1.4 220 chr2L 13913547 intergenic not near genes chr2L 13913657 intergenic not near genes chr2L 13913767 intergenic not near genes chr2L_17_13910001 chr2L_13910001 RAL-223 521 chr2L 13981481 13981539 chr2L 13981622 13981680 26 139 9.0 11.5 10.2 2.3 199 chr2L 13981481 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981680 exon NimC2 + chr2L_26_13980001 chr2L_13980001 RAL-223 522 chr2L 13987164 13987236 chr2L 13987295 13987367 34 131 6.5 5.0 5.8 5.0 203 chr2L 13987164 intron rk - chr2L 13987266 intron rk - chr2L 13987367 intron rk - chr2L_34_13985001 chr2L_13985001 RAL-223 523 chr2L 13993899 13993965 chr2L 13994023 13994093 12 128 0.0 7.0 3.5 2.7 194 chr2L 13993899 intron rk - chr2L 13993996 intron rk - chr2L 13994093 intron rk - chr2L_12_13990001 chr2L_13990001 RAL-223 524 chr2L 14026709 14026753 chr2L 14026845 14026889 21 136 8.5 9.5 9.0 2.1 180 chr2L 14026709 intergenic CG4500 + chr2L 14026799 intergenic CG4500 + chr2L 14026889 intergenic CG4500 + chr2L_21_14025001 chr2L_14025001 RAL-223 525 chr2L 14056759 14056834 chr2L 14056895 14056970 27 135 4.0 6.0 5.0 4.5 211 chr2L 14056759 intron nAChRalpha5 + chr2L 14056864 intron nAChRalpha5 + chr2L 14056970 intron nAChRalpha5 + chr2L_27_14055001 chr2L_14055001 RAL-223 526 chr2L 14074013 14074075 chr2L 14074174 14074237 30 160 9.5 10.5 10.0 2.7 224 chr2L 14074013 intron nAChRalpha5 + chr2L 14074125 intron nAChRalpha5 + chr2L 14074237 intron nAChRalpha5 + chr2L_30_14070001 chr2L_14070001 RAL-223 527 chr2L 14107265 14107318 chr2L 14107394 14107447 25 129 14.0 14.0 14.0 1.7 182 chr2L 14107265 exon CG16879 + chr2L 14107356 exon CG16879 + chr2L 14107447 3` UTR CG16879 + chr2L_25_14105001 chr2L_14105001 RAL-223 528 chr2L 14246232 14246314 chr2L 14246359 14246450 17 131 3.0 1.5 2.2 5.3 218 chr2L 14246232 intergenic not near genes chr2L 14246341 intergenic not near genes chr2L 14246450 intergenic not near genes chr2L_17_14245001 chr2L_14245001 RAL-223 529 chr2L 14271004 14271066 chr2L 14271131 14271193 35 127 10.0 8.5 9.2 3.4 189 chr2L 14271004 intron wb + chr2L 14271098 intron wb + chr2L 14271193 intron wb + chr2L_35_14270001 chr2L_14270001 RAL-223 530 chr2L 14301712 14301728 chr2L 14301846 14301862 9 134 18.0 0.5 9.2 0.9 150 chr2L 14301712 intron wb + chr2L 14301787 intron wb + chr2L 14301862 intron wb + chr2L_9_14300001 chr2L_14300001 RAL-223 531 chr2L 14448141 14448201 chr2L 14448283 14448295 24 139 9.5 6.0 7.8 2.7 154 chr2L 14448141 intergenic CR45726 - chr2L 14448218 intergenic CR45726 - chr2L 14448295 intergenic CR45726 - chr2L_24_14445001 chr2L_14445001 RAL-223 532 chr2L 14532154 14532223 chr2L 14532284 14532348 36 128 8.5 13.0 10.8 3.1 194 chr2L 14532154 intergenic CR44852 - chr2L 14532251 intergenic CR44852 - chr2L 14532348 intergenic CR44852 - chr2L_36_14530001 chr2L_14530001 RAL-223 533 chr2L 14537608 14537687 chr2L 14537750 14537829 30 142 2.5 5.0 3.8 6.2 221 chr2L 14537608 intergenic not near genes chr2L 14537718 intergenic not near genes chr2L 14537829 intergenic not near genes chr2L_30_14535001 chr2L_14535001 RAL-223 534 chr2L 14555105 14555156 chr2L 14555234 14555285 19 129 8.0 13.0 10.5 1.7 180 chr2L 14555105 intergenic not near genes chr2L 14555195 intergenic not near genes chr2L 14555285 intergenic not near genes chr2L_19_14555001 chr2L_14555001 RAL-223 535 chr2L 14588340 14588417 chr2L 14588544 14588621 39 202 0.5 7.5 4.0 7.8 281 chr2L 14588340 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588621 intergenic CG42680 - chr2L_39_14585001 chr2L_14585001 RAL-223 536 chr2L 14588650 14588670 chr2L 14588991 14589011 11 341 4.0 5.0 4.5 2.0 361 chr2L 14588650 intergenic CG42680 - chr2L 14588830 intergenic not near genes chr2L 14589011 intergenic not near genes chr2L_11_14585001 chr2L_14585001 RAL-223 537 chr2L 14601929 14601998 chr2L 14602063 14602132 28 133 10.0 9.5 9.8 2.6 203 chr2L 14601929 exon osp - chr2L 14602030 intron osp - chr2L 14602132 exon osp - chr2L_28_14600001 chr2L_14600001 RAL-223 538 chr2L 14618870 14618888 chr2L 14619301 14619319 jockey 6 431 7.5 9.0 8.2 0.7 449 chr2L 14618870 intron,3` UTR,3` UTR osp -,Adh +,Adhr + chr2L 14619094 intron osp - chr2L 14619319 intron osp - chr2L_6_14615001 chr2L_14615001 RAL-223 539 chr2L 14642530 14642600 chr2L 14651743 14651793 roo 24 9212 11.0 9.5 10.2 2.1 9263 chr2L 14642530 intron osp - chr2L 14647162 intron osp - chr2L 14651793 intron osp - chr2L_24_14645001 chr2L_14645001 RAL-223 540 chr2L 14694208 14694283 chr2L 14694382 14694457 27 174 6.5 4.5 5.5 4.2 249 chr2L 14694208 intergenic not near genes chr2L 14694332 intergenic not near genes chr2L 14694457 intergenic not near genes chr2L_27_14690001 chr2L_14690001 RAL-223 541 chr2L 14707163 14707236 chr2L 14707332 14707400 27 169 7.0 0.0 3.5 6.0 237 chr2L 14707163 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707400 intergenic not near genes chr2L_27_14705001 chr2L_14705001 RAL-223 542 chr2L 14716553 14716633 chr2L 14716681 14716762 25 127 6.0 4.0 5.0 4.2 209 chr2L 14716553 intergenic not near genes chr2L 14716658 intergenic not near genes chr2L 14716762 intergenic not near genes chr2L_25_14715001 chr2L_14715001 RAL-223 543 chr2L 14761861 14761915 chr2L 14762010 14762064 17 149 6.5 5.0 5.8 2.5 203 chr2L 14761861 3` UTR CG4691 + chr2L 14761962 intergenic CR44858 +,CG4691 + chr2L 14762064 5` UTR CR44858 + chr2L_17_14760001 chr2L_14760001 RAL-223 544 chr2L 14768932 14768955 chr2L 14769060 14769083 13 128 0.0 17.0 8.5 1.4 151 chr2L 14768932 intergenic not near genes chr2L 14769008 intergenic not near genes chr2L 14769083 intergenic not near genes chr2L_13_14765001 chr2L_14765001 RAL-223 545 chr2L 14794241 14794302 chr2L 14794505 14794566 15 264 6.5 6.5 6.5 2.0 325 chr2L 14794241 intergenic CG18420 - chr2L 14794404 intergenic CG18420 - chr2L 14794566 3` UTR CG18420 - chr2L_15_14790001 chr2L_14790001 RAL-223 546 chr2L 14803833 14803912 chr2L 14809086 14809125 copia 25 5251 7.0 8.0 7.5 2.9 5292 chr2L 14803833 intergenic not near genes chr2L 14806479 intergenic not near genes chr2L 14809125 intergenic not near genes chr2L_25_14805001 chr2L_14805001 RAL-223 547 chr2L 14833743 14833821 chr2L 14833897 14833975 21 154 2.0 7.5 4.8 3.6 232 chr2L 14833743 intergenic not near genes chr2L 14833859 intergenic not near genes chr2L 14833975 intergenic not near genes chr2L_21_14830001 chr2L_14830001 RAL-223 548 chr2L 14840926 14841003 chr2L 14841064 14841140 23 137 7.0 7.5 7.2 2.8 214 chr2L 14840926 3` UTR CR43805 - chr2L 14841033 3` UTR CR43805 - chr2L 14841140 3` UTR CR43805 - chr2L_23_14840001 chr2L_14840001 RAL-223 549 chr2L 14858517 14858579 chr2L 14858648 14858710 13 131 5.0 2.5 3.8 2.7 193 chr2L 14858517 intergenic not near genes chr2L 14858614 intergenic not near genes chr2L 14858710 intergenic not near genes chr2L_13_14855001 chr2L_14855001 RAL-223 550 chr2L 14884625 14884678 chr2L 14884752 14884805 19 127 7.0 3.0 5.0 3.2 180 chr2L 14884625 intergenic CR45302 + chr2L 14884715 intergenic CR45302 + chr2L 14884805 intergenic CR45302 + chr2L_19_14880001 chr2L_14880001 RAL-223 551 chr2L 14889905 14889977 chr2L 14890380 14890452 jockey 21 475 9.0 5.5 7.2 2.6 547 chr2L 14889905 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890452 intergenic not near genes chr2L_21_14890001 chr2L_14890001 RAL-223 552 chr2L 14939603 14939671 chr2L 14939780 14939841 23 177 7.0 8.0 7.5 2.7 238 chr2L 14939603 intron CG42313 - chr2L 14939722 intron CG42313 - chr2L 14939841 intron CG42313 - chr2L_23_14935001 chr2L_14935001 RAL-223 553 chr2L 14945386 14945440 chr2L 14945532 14945544 20 144 7.0 0.0 3.5 4.4 158 chr2L 14945386 intron CG42313 - chr2L 14945465 intron CG42313 - chr2L 14945544 intron CG42313 - chr2L_20_14945001 chr2L_14945001 RAL-223 554 chr2L 14975538 14975564 chr2L 14975676 14975702 11 138 4.5 8.0 6.2 1.5 164 chr2L 14975538 intergenic mol - chr2L 14975620 intergenic mol - chr2L 14975702 intergenic mol - chr2L_11_14975001 chr2L_14975001 RAL-223 555 chr2L 14984332 14984392 chr2L 14991984 14992044 opus 23 7651 13.0 8.5 10.8 1.9 7712 chr2L 14984332 intron mol - chr2L 14988188 intron mol - chr2L 14992044 intron mol - chr2L_23_14985001 chr2L_14985001 RAL-223 556 chr2L 15013113 15013176 chr2L 15013267 15013335 18 155 5.0 4.0 4.5 3.3 222 chr2L 15013113 intergenic CR43856 - chr2L 15013224 intergenic not near genes chr2L 15013335 intergenic not near genes chr2L_18_15010001 chr2L_15010001 RAL-223 557 chr2L 15014601 15014626 chr2L 15014715 15014755 4 125 0.0 5.5 2.8 1.1 154 chr2L 15014601 intergenic not near genes chr2L 15014678 intergenic not near genes chr2L 15014755 intergenic not near genes chr2L_4_15010001 chr2L_15010001 RAL-223 558 chr2L 15078030 15078095 chr2L 15078168 15078204 25 136 3.5 10.5 7.0 3.1 174 chr2L 15078030 intron CG15270 + chr2L 15078117 intron CG15270 + chr2L 15078204 intron CG15270 + chr2L_25_15075001 chr2L_15075001 RAL-223 559 chr2L 15098493 15098542 chr2L 15098623 15098672 24 130 7.0 1.0 4.0 4.8 179 chr2L 15098493 intergenic not near genes chr2L 15098582 intergenic not near genes chr2L 15098672 intergenic not near genes chr2L_24_15095001 chr2L_15095001 RAL-223 560 chr2L 15099901 15099938 chr2L 15100038 15100086 5 144 6.5 0.0 3.2 1.2 185 chr2L 15099901 intergenic not near genes chr2L 15099994 intergenic not near genes chr2L 15100086 intergenic not near genes chr2L_5_15095001 chr2L_15095001 RAL-223 561 chr2L 15138724 15138763 chr2L 15138857 15138896 11 130 6.5 5.5 6.0 1.6 172 chr2L 15138724 intergenic not near genes chr2L 15138810 intergenic not near genes chr2L 15138896 intergenic not near genes chr2L_11_15135001 chr2L_15135001 RAL-223 562 chr2L 15163914 15163933 chr2L 15164041 15164046 6 125 5.5 10.0 7.8 0.7 132 chr2L 15163914 intron CG4168 - chr2L 15163980 intron CG4168 - chr2L 15164046 intron CG4168 - chr2L_6_15160001 chr2L_15160001 RAL-223 563 chr2L 15171036 15171103 chr2L 15171237 15171271 18 202 0.5 6.0 3.2 4.3 235 chr2L 15171036 intron CG4168 - chr2L 15171154 intron CG4168 - chr2L 15171271 intron CG4168 - chr2L_18_15170001 chr2L_15170001 RAL-223 564 chr2L 15226331 15226396 chr2L 15226457 15226522 23 125 10.5 3.5 7.0 2.9 191 chr2L 15226331 intergenic not near genes chr2L 15226426 intergenic not near genes chr2L 15226522 intergenic not near genes chr2L_23_15225001 chr2L_15225001 RAL-223 565 chr2L 15313702 15313768 chr2L 15313873 15313939 23 167 8.0 11.0 9.5 2.2 237 chr2L 15313702 intergenic not near genes chr2L 15313820 intergenic not near genes chr2L 15313939 intergenic not near genes chr2L_23_15310001 chr2L_15310001 RAL-223 566 chr2L 15354715 15354751 chr2L 15354852 15354888 13 137 6.5 7.5 7.0 1.6 173 chr2L 15354715 intergenic not near genes chr2L 15354802 intergenic not near genes chr2L 15354888 intergenic not near genes chr2L_13_15350001 chr2L_15350001 RAL-223 567 chr2L 15409257 15409321 chr2L 15409385 15409449 21 127 8.0 13.0 10.5 1.8 192 chr2L 15409257 intergenic not near genes chr2L 15409353 intergenic not near genes chr2L 15409449 intergenic not near genes chr2L_21_15405001 chr2L_15405001 RAL-223 568 chr2L 15411330 15411372 chr2L 15411461 15411503 15 131 11.0 4.5 7.8 1.7 173 chr2L 15411330 intergenic not near genes chr2L 15411416 intergenic not near genes chr2L 15411503 intergenic not near genes chr2L_15_15410001 chr2L_15410001 RAL-223 569 chr2L 15427235 15427291 chr2L 15427471 15427527 19 236 10.0 0.0 5.0 3.2 292 chr2L 15427235 intergenic not near genes chr2L 15427381 intergenic not near genes chr2L 15427527 intergenic not near genes chr2L_19_15425001 chr2L_15425001 RAL-223 570 chr2L 15446005 15446062 chr2L 15453524 15453581 blood 15 7519 8.5 0.0 4.2 2.9 7576 chr2L 15446005 intergenic not near genes chr2L 15449793 intergenic not near genes chr2L 15453581 intergenic not near genes chr2L_15_15445001 chr2L_15445001 RAL-223 571 chr2L 15458232 15458274 chr2L 15458370 15458412 8 138 1.0 7.0 4.0 1.6 180 chr2L 15458232 intergenic not near genes chr2L 15458322 intergenic not near genes chr2L 15458412 intergenic not near genes chr2L_8_15455001 chr2L_15455001 RAL-223 572 chr2L 15482531 15482599 chr2L 15482717 15482785 29 186 8.5 9.0 8.8 3.0 254 chr2L 15482531 intergenic not near genes chr2L 15482658 intergenic not near genes chr2L 15482785 intergenic not near genes chr2L_29_15480001 chr2L_15480001 RAL-223 573 chr2L 15499863 15499937 chr2L 15500001 15500074 17 138 4.5 7.5 6.0 2.4 211 chr2L 15499863 intron lace + chr2L 15499968 intron lace + chr2L 15500074 intron lace + chr2L_17_15495001 chr2L_15495001 RAL-223 574 chr2L 15535852 15535912 chr2L 15535977 15536052 24 138 6.5 4.5 5.5 3.7 200 chr2L 15535852 intergenic not near genes chr2L 15535952 intergenic not near genes chr2L 15536052 intergenic not near genes chr2L_24_15535001 chr2L_15535001 RAL-223 575 chr2L 15586365 15586430 chr2L 15593467 15593532 297 24 7102 13.0 9.5 11.2 2.0 7167 chr2L 15586365 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593532 intergenic not near genes chr2L_24_15585001 chr2L_15585001 RAL-223 576 chr2L 15595472 15595519 chr2L 15595613 15595660 17 141 9.5 6.5 8.0 1.9 188 chr2L 15595472 intergenic not near genes chr2L 15595566 intergenic not near genes chr2L 15595660 intergenic not near genes chr2L_17_15595001 chr2L_15595001 RAL-223 577 chr2L 15598744 15598799 chr2L 15598873 15598928 14 129 5.0 0.0 2.5 4.0 184 chr2L 15598744 intergenic not near genes chr2L 15598836 intergenic not near genes chr2L 15598928 intergenic not near genes chr2L_14_15595001 chr2L_15595001 RAL-223 578 chr2L 15636632 15636691 chr2L 15636753 15636817 16 126 6.5 7.0 6.8 2.1 185 chr2L 15636632 intergenic not near genes chr2L 15636724 intergenic not near genes chr2L 15636817 intergenic not near genes chr2L_16_15635001 chr2L_15635001 RAL-223 579 chr2L 15749976 15750268 chr2L 15750139 15750402 13 159 0.0 0.0 0.0 13.0 426 chr2L 15749976 intron l(2)35Di - chr2L 15750189 intron l(2)35Di - chr2L 15750402 intron l(2)35Di - chr2L_13_15750001 chr2L_15750001 RAL-223 580 chr2L 15750324 15750327 chr2L 15750458 15750461 5 134 0.0 23.5 11.8 0.4 137 chr2L 15750324 intron l(2)35Di - chr2L 15750392 intron l(2)35Di - chr2L 15750461 intron l(2)35Di - chr2L_5_15750001 chr2L_15750001 RAL-223 581 chr2L 15823303 15823369 chr2L 15823429 15823495 16 126 7.0 5.0 6.0 2.3 192 chr2L 15823303 intergenic CR44601 - chr2L 15823399 intergenic CR44601 - chr2L 15823495 intergenic not near genes chr2L_16_15820001 chr2L_15820001 RAL-223 582 chr2L 15826846 15826890 chr2L 15829290 15829334 Tabor 17 2444 6.0 9.5 7.8 1.9 2488 chr2L 15826846 intergenic not near genes chr2L 15828090 intergenic not near genes chr2L 15829334 intergenic not near genes chr2L_17_15825001 chr2L_15825001 RAL-223 583 chr2L 15935159 15935209 chr2L 15935296 15935349 17 139 3.5 0.0 1.8 6.1 190 chr2L 15935159 intron beat-Ib - chr2L 15935254 intron beat-Ib - chr2L 15935349 intron beat-Ib - chr2L_17_15935001 chr2L_15935001 RAL-223 584 chr2L 15955980 15956050 chr2L 15957497 15957567 hobo 21 1514 8.5 7.5 8.0 2.3 1587 chr2L 15955980 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957567 intron beat-Ib - chr2L_21_15955001 chr2L_15955001 RAL-223 585 chr2L 16008655 16008687 chr2L 16008806 16008827 14 150 1.0 3.0 2.0 4.7 172 chr2L 16008655 intron beat-Ic + chr2L 16008741 intron beat-Ic + chr2L 16008827 intron beat-Ic + chr2L_14_16005001 chr2L_16005001 RAL-223 586 chr2L 16056106 16056156 chr2L 16056232 16056282 12 125 6.0 3.5 4.8 2.1 176 chr2L 16056106 intron beat-Ia + chr2L 16056194 intron beat-Ia + chr2L 16056282 exon beat-Ia + chr2L_12_16055001 chr2L_16055001 RAL-223 587 chr2L 16062238 16062305 chr2L 16062600 16062667 25 362 6.5 6.0 6.2 3.5 429 chr2L 16062238 intron beat-Ia + chr2L 16062452 intron beat-Ia + chr2L 16062667 intron beat-Ia + chr2L_25_16060001 chr2L_16060001 RAL-223 588 chr2L 16069247 16069294 chr2L 16069364 16069426 12 129 4.5 8.0 6.2 1.7 179 chr2L 16069247 intron beat-Ia + chr2L 16069336 intron beat-Ia + chr2L 16069426 intron beat-Ia + chr2L_12_16065001 chr2L_16065001 RAL-223 589 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 33.5 37.0 35.2 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-223 590 chr2L 16098872 16098936 chr2L 16099010 16099074 30 138 8.5 5.5 7.0 3.8 202 chr2L 16098872 intergenic not near genes chr2L 16098973 intergenic not near genes chr2L 16099074 intergenic not near genes chr2L_30_16095001 chr2L_16095001 RAL-223 591 chr2L 16115485 16115542 chr2L 16115611 16115667 14 126 7.5 10.0 8.8 1.4 182 chr2L 16115485 intergenic not near genes chr2L 16115576 intergenic not near genes chr2L 16115667 intergenic not near genes chr2L_14_16115001 chr2L_16115001 RAL-223 592 chr2L 16141121 16141127 chr2L 16146378 16146384 copia 4 5257 21.0 6.5 13.8 0.3 5263 chr2L 16141121 intergenic not near genes chr2L 16143752 intergenic not near genes chr2L 16146384 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-223 593 chr2L 16141133 16141187 chr2L 16146377 16146444 copia 27 5256 8.0 6.5 7.2 3.3 5311 chr2L 16141133 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146444 intergenic not near genes chr2L_27_16140001 chr2L_16140001 RAL-223 594 chr2L 16153692 16153742 chr2L 16160810 16160860 297 9 7118 11.5 4.5 8.0 1.0 7168 chr2L 16153692 intergenic not near genes chr2L 16157276 intergenic not near genes chr2L 16160860 intergenic not near genes chr2L_9_16155001 chr2L_16155001 RAL-223 595 chr2L 16213273 16213283 chr2L 16213408 16213418 6 135 10.5 0.0 5.2 1.0 145 chr2L 16213273 3` UTR CG31819 + chr2L 16213346 intergenic CG31819 + chr2L 16213418 intergenic CG31819 + chr2L_6_16210001 chr2L_16210001 RAL-223 596 chr2L 16215070 16215125 chr2L 16215208 16215253 9 130 0.0 6.0 3.0 2.2 183 chr2L 16215070 intergenic not near genes chr2L 16215162 intergenic not near genes chr2L 16215253 intergenic not near genes chr2L_9_16215001 chr2L_16215001 RAL-223 597 chr2L 9084339 9084339 chr2L 16217660 16217660 7 7133321 31.0 37.0 34.0 0.2 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-223 598 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 12 145889 33.5 37.0 35.2 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-223 599 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 38.0 37.0 37.5 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-223 600 chr2L 16241618 16241643 chr2L 16241719 16241771 6 120 2.0 8.5 5.2 1.0 153 chr2L 16241618 intergenic CG42817 +,CG42818 + chr2L 16241694 intergenic CG42817 +,CG42818 + chr2L 16241771 intergenic CG42818 +,CG42817 + chr2L_6_16240001 chr2L_16240001 RAL-223 601 chr2L 16254842 16254916 chr2L 16255151 16255225 47 309 13.0 16.5 14.8 3.0 383 chr2L 16254842 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255225 intron PRL-1 - chr2L_47_16255001 chr2L_16255001 RAL-223 602 chr2L 16280236 16280281 chr2L 16281457 16281502 1360 21 1219 8.5 12.5 10.5 1.8 1266 chr2L 16280236 intron crp - chr2L 16280869 intron crp - chr2L 16281502 intron crp - chr2L_21_16280001 chr2L_16280001 RAL-223 603 chr2L 16354727 16354786 chr2L 16354868 16354928 17 140 2.5 8.0 5.2 2.7 201 chr2L 16354727 intergenic CaBP1 -,CG4455 + chr2L 16354828 intergenic CaBP1 -,CG4455 + chr2L 16354928 3` UTR CaBP1 - chr2L_17_16350001 chr2L_16350001 RAL-223 604 chr2L 16365423 16365470 chr2L 16365623 16365670 10 200 2.0 7.5 4.8 1.7 247 chr2L 16365423 intergenic jhamt + chr2L 16365546 intergenic jhamt + chr2L 16365670 intergenic jhamt + chr2L_10_16365001 chr2L_16365001 RAL-223 605 chr2L 16394910 16394941 chr2L 16395046 16395077 10 136 6.5 15.5 11.0 0.8 167 chr2L 16394910 intergenic not near genes chr2L 16394994 intergenic not near genes chr2L 16395077 intergenic not near genes chr2L_10_16390001 chr2L_16390001 RAL-223 606 chr2L 16408096 16408154 chr2L 16408253 16408306 5 155 0.0 10.5 5.2 0.8 210 chr2L 16408096 intron CG5888 - chr2L 16408201 intron CG5888 - chr2L 16408306 intron CG5888 - chr2L_5_16405001 chr2L_16405001 RAL-223 607 chr2L 16432450 16432519 chr2L 16432586 16432665 25 135 4.5 0.0 2.2 7.8 215 chr2L 16432450 intron CG5888 - chr2L 16432558 intron CG5888 - chr2L 16432665 intron CG5888 - chr2L_25_16430001 chr2L_16430001 RAL-223 608 chr2L 16488679 16488755 chr2L 16488849 16488925 33 169 6.5 7.0 6.8 4.2 246 chr2L 16488679 exon CG4580 + chr2L 16488802 exon CG4580 + chr2L 16488925 exon CG4580 + chr2L_33_16485001 chr2L_16485001 RAL-223 609 chr2L 16489991 16490071 chr2L 16490127 16490197 10 132 6.5 0.0 3.2 2.4 206 chr2L 16489991 exon CG4580 + chr2L 16490094 exon CG4580 + chr2L 16490197 intergenic CG4580 +,CR44994 - chr2L_10_16490001 chr2L_16490001 RAL-223 610 chr2L 16504950 16505013 chr2L 16505112 16505173 16 160 0.0 8.0 4.0 3.2 223 chr2L 16504950 intron Tpr2 + chr2L 16505062 intron Tpr2 + chr2L 16505173 intron Tpr2 + chr2L_16_16505001 chr2L_16505001 RAL-223 611 chr2L 16511920 16511985 chr2L 16519084 16519149 HMS-Beagle 25 7163 10.0 9.0 9.5 2.4 7229 chr2L 16511920 intron CG5953 - chr2L 16515534 intron CG5953 - chr2L 16519149 intron CG5953 - chr2L_25_16515001 chr2L_16515001 RAL-223 612 chr2L 16572157 16572237 chr2L 16572298 16572382 20 144 0.0 7.0 3.5 4.4 225 chr2L 16572157 intron CG42389 + chr2L 16572270 intron CG42389 + chr2L 16572382 intron CG42389 + chr2L_20_16570001 chr2L_16570001 RAL-223 613 chr2L 16589783 16589826 chr2L 16589923 16589966 13 138 6.0 11.0 8.5 1.4 183 chr2L 16589783 intron CG42389 + chr2L 16589874 intron CG42389 + chr2L 16589966 intron CG42389 + chr2L_13_16585001 chr2L_16585001 RAL-223 614 chr2L 16750682 16750748 chr2L 16750813 16750879 27 129 4.5 8.0 6.2 3.8 197 chr2L 16750682 3` UTR CG17912 + chr2L 16750780 3` UTR CG17912 + chr2L 16750879 3` UTR CG17912 + chr2L_27_16750001 chr2L_16750001 RAL-223 615 chr2L 16756722 16756748 chr2L 16756864 16756890 9 142 3.0 4.5 3.8 1.9 168 chr2L 16756722 intron yellow-b + chr2L 16756806 intron yellow-b + chr2L 16756890 intron yellow-b + chr2L_9_16755001 chr2L_16755001 RAL-223 616 chr2L 16764925 16764996 chr2L 16765055 16765126 31 130 5.0 8.5 6.8 4.0 201 chr2L 16764925 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765126 intergenic not near genes chr2L_31_16765001 chr2L_16765001 RAL-223 617 chr2L 16809622 16809656 chr2L 16809800 16809834 6 178 5.5 0.0 2.8 1.6 212 chr2L 16809622 intron,intron CG13280 -,CG13272 + chr2L 16809728 intron,intron CG13280 -,CG13272 + chr2L 16809834 intron,intron CG13280 -,CG13272 + chr2L_6_16805001 chr2L_16805001 RAL-223 618 chr2L 16840976 16841042 chr2L 16841096 16841168 9 122 11.5 5.0 8.2 1.0 192 chr2L 16840976 intron,intron SclA +,SclB + chr2L 16841072 intron,intron SclA +,SclB + chr2L 16841168 intron,intron SclA +,SclB + chr2L_9_16840001 chr2L_16840001 RAL-223 619 chr2L 16852735 16852806 chr2L 16859926 16859998 Doc4-element 13 7192 0.0 8.5 4.2 2.5 7263 chr2L 16852735 intergenic CG31810 - chr2L 16856366 intron CG31809 - chr2L 16859998 intergenic CG6012 - chr2L_13_16855001 chr2L_16855001 RAL-223 620 chr2L 16927226 16927295 chr2L 16927357 16927426 34 128 7.5 5.5 6.5 4.5 200 chr2L 16927226 intergenic not near genes chr2L 16927326 intergenic not near genes chr2L 16927426 intergenic not near genes chr2L_34_16925001 chr2L_16925001 RAL-223 621 chr2L 16958062 16958125 chr2L 16962900 16962963 Doc 27 4838 6.5 9.0 7.8 3.1 4901 chr2L 16958062 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962963 intergenic not near genes chr2L_27_16960001 chr2L_16960001 RAL-223 622 chr2L 17032455 17032523 chr2L 17032590 17032658 15 135 2.5 3.0 2.8 3.9 203 chr2L 17032455 intergenic not near genes chr2L 17032556 intergenic not near genes chr2L 17032658 intergenic not near genes chr2L_15_17030001 chr2L_17030001 RAL-223 623 chr2L 17033890 17033943 chr2L 17034025 17034078 17 135 7.5 10.5 9.0 1.7 188 chr2L 17033890 intergenic not near genes chr2L 17033984 intergenic not near genes chr2L 17034078 intergenic not near genes chr2L_17_17030001 chr2L_17030001 RAL-223 624 chr2L 17050012 17050023 chr2L 17050148 17050160 4 135 11.0 7.5 9.2 0.4 148 chr2L 17050012 intergenic not near genes chr2L 17050086 intergenic not near genes chr2L 17050160 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-223 625 chr2L 17052371 17052441 chr2L 17052533 17052603 14 162 3.0 5.0 4.0 2.8 232 chr2L 17052371 intergenic not near genes chr2L 17052487 intergenic not near genes chr2L 17052603 intergenic not near genes chr2L_14_17050001 chr2L_17050001 RAL-223 626 chr2L 17053236 17053304 chr2L 17053690 17053764 20 458 4.5 8.0 6.2 2.8 528 chr2L 17053236 intergenic not near genes chr2L 17053500 intergenic not near genes chr2L 17053764 intergenic not near genes chr2L_20_17050001 chr2L_17050001 RAL-223 627 chr2L 17058404 17058415 chr2L 17058607 17058618 5 203 9.5 12.0 10.8 0.4 214 chr2L 17058404 intergenic not near genes chr2L 17058511 intergenic not near genes chr2L 17058618 intergenic not near genes chr2L_5_17055001 chr2L_17055001 RAL-223 628 chr2L 17062721 17062759 chr2L 17062853 17062891 7 132 5.5 7.0 6.2 1.0 170 chr2L 17062721 intergenic not near genes chr2L 17062806 intergenic not near genes chr2L 17062891 intergenic not near genes chr2L_7_17060001 chr2L_17060001 RAL-223 629 chr2L 17063424 17063443 chr2L 17063569 17063588 9 145 5.5 4.5 5.0 1.5 164 chr2L 17063424 intergenic not near genes chr2L 17063506 intergenic not near genes chr2L 17063588 intergenic not near genes chr2L_9_17060001 chr2L_17060001 RAL-223 630 chr2L 17098010 17098063 chr2L 17098125 17098189 7 121 2.0 8.5 5.2 1.1 179 chr2L 17098010 intergenic not near genes chr2L 17098100 intergenic not near genes chr2L 17098189 intergenic not near genes chr2L_7_17095001 chr2L_17095001 RAL-223 631 chr2L 17164509 17164565 chr2L 17165722 17165778 18 1213 9.0 8.0 8.5 1.9 1269 chr2L 17164509 intron,intron CG34106 +,beat-IIIa + chr2L 17165144 intron,intron CG34106 +,beat-IIIa + chr2L 17165778 intron,intron CG34106 +,beat-IIIa + chr2L_18_17165001 chr2L_17165001 RAL-223 632 chr2L 17164567 17164575 chr2L 17165780 17165788 6 1212 8.5 20.5 14.5 0.4 1221 chr2L 17164567 intron,intron CG34106 +,beat-IIIa + chr2L 17165178 intron,intron CG34106 +,beat-IIIa + chr2L 17165788 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-223 633 chr2L 17167521 17167584 chr2L 17167812 17167874 pogo 18 291 7.5 8.0 7.8 2.0 353 chr2L 17167521 intron,intron CG34106 +,beat-IIIa + chr2L 17167698 intron,intron CG34106 +,beat-IIIa + chr2L 17167874 intron,intron CG34106 +,beat-IIIa + chr2L_18_17165001 chr2L_17165001 RAL-223 634 chr2L 17170400 17170473 chr2L 17170541 17170614 21 141 4.5 4.0 4.2 4.0 214 chr2L 17170400 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17170507 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170614 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L_21_17170001 chr2L_17170001 RAL-223 635 chr2L 17193847 17193858 chr2L 17193984 17193995 6 137 0.0 1.0 0.5 4.0 148 chr2L 17193847 intron beat-IIIc - chr2L 17193921 intron beat-IIIc - chr2L 17193995 intron beat-IIIc - chr2L_6_17190001 chr2L_17190001 RAL-223 636 chr2L 17199119 17199177 chr2L 17200636 17200694 hobo 21 1517 13.5 2.5 8.0 2.3 1575 chr2L 17199119 intron beat-IIIc - chr2L 17199906 intron beat-IIIc - chr2L 17200694 intron beat-IIIc - chr2L_21_17195001 chr2L_17195001 RAL-223 637 chr2L 17238783 17238859 chr2L 17238918 17238994 25 134 9.5 5.5 7.5 2.9 211 chr2L 17238783 intron beat-IIIc - chr2L 17238888 intron beat-IIIc - chr2L 17238994 intron beat-IIIc - chr2L_25_17235001 chr2L_17235001 RAL-223 638 chr2L 17243900 17243945 chr2L 17244158 17244203 17 258 3.5 8.0 5.8 2.5 303 chr2L 17243900 intron beat-IIIc - chr2L 17244052 intron beat-IIIc - chr2L 17244203 intron beat-IIIc - chr2L_17_17240001 chr2L_17240001 RAL-223 639 chr2L 17273148 17273219 chr2L 17277981 17278052 F-element 31 4832 10.0 8.5 9.2 3.0 4904 chr2L 17273148 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278052 intergenic not near genes chr2L_31_17275001 chr2L_17275001 RAL-223 640 chr2L 17327872 17327928 chr2L 17328008 17328064 22 136 8.5 13.5 11.0 1.8 192 chr2L 17327872 intergenic not near genes chr2L 17327968 intergenic not near genes chr2L 17328064 intergenic not near genes chr2L_22_17325001 chr2L_17325001 RAL-223 641 chr2L 17331925 17331941 chr2L 17332056 17332072 6 131 7.0 0.0 3.5 1.3 147 chr2L 17331925 intergenic not near genes chr2L 17331998 intergenic not near genes chr2L 17332072 intergenic not near genes chr2L_6_17330001 chr2L_17330001 RAL-223 642 chr2L 17335488 17335499 chr2L 17336719 17336730 1360 7 1231 9.5 8.5 9.0 0.7 1242 chr2L 17335488 intergenic not near genes chr2L 17336109 intergenic not near genes chr2L 17336730 intergenic not near genes chr2L_7_17335001 chr2L_17335001 RAL-223 643 chr2L 17351881 17351947 chr2L 17352032 17352099 11 152 6.5 3.5 5.0 1.8 218 chr2L 17351881 intergenic not near genes chr2L 17351990 intergenic not near genes chr2L 17352099 intergenic not near genes chr2L_11_17350001 chr2L_17350001 RAL-223 644 chr2L 17359978 17360051 chr2L 17360206 17360279 18 228 4.5 5.0 4.8 3.1 301 chr2L 17359978 intergenic not near genes chr2L 17360128 intergenic not near genes chr2L 17360279 intergenic not near genes chr2L_18_17360001 chr2L_17360001 RAL-223 645 chr2L 17379661 17379702 chr2L 17379796 17379837 12 135 4.0 5.5 4.8 2.1 176 chr2L 17379661 intron Lrch - chr2L 17379749 intron Lrch - chr2L 17379837 intron Lrch - chr2L_12_17375001 chr2L_17375001 RAL-223 646 chr2L 17419251 17419301 chr2L 17419377 17419427 8 126 6.0 8.0 7.0 1.0 176 chr2L 17419251 intron Dif - chr2L 17419339 intron Dif - chr2L 17419427 intron Dif - chr2L_8_17415001 chr2L_17415001 RAL-223 647 chr2L 17425717 17425796 chr2L 17425894 17425973 20 177 7.0 5.5 6.2 2.8 256 chr2L 17425717 intron Dif - chr2L 17425845 intron Dif - chr2L 17425973 intron Dif - chr2L_20_17425001 chr2L_17425001 RAL-223 648 chr2L 17432008 17432039 chr2L 17432165 17432196 1360 4 157 0.0 13.0 6.5 0.5 188 chr2L 17432008 intron Dif - chr2L 17432102 intron Dif - chr2L 17432196 intron Dif - chr2L_4_17430001 chr2L_17430001 RAL-223 649 chr2L 17511585 17511658 chr2L 17511777 17511848 21 192 9.5 3.0 6.2 2.9 263 chr2L 17511585 exon Dhc36C + chr2L 17511716 intron Dhc36C + chr2L 17511848 exon Dhc36C + chr2L_21_17510001 chr2L_17510001 RAL-223 650 chr2L 17571149 17571158 chr2L 17571282 17571291 6 133 0.0 19.0 9.5 0.6 142 chr2L 17571149 intergenic not near genes chr2L 17571220 intergenic not near genes chr2L 17571291 intergenic not near genes chr2L_6_17570001 chr2L_17570001 RAL-223 651 chr2L 17607426 17607476 chr2L 17607574 17607624 4 148 8.5 0.0 4.2 0.8 198 chr2L 17607426 intergenic CR44412 - chr2L 17607525 intergenic CR44412 - chr2L 17607624 intergenic CR44412 - chr2L_4_17605001 chr2L_17605001 RAL-223 652 chr2L 17631444 17631506 chr2L 17631583 17631645 24 139 8.5 6.5 7.5 2.8 201 chr2L 17631444 intergenic not near genes chr2L 17631544 intergenic not near genes chr2L 17631645 intergenic not near genes chr2L_24_17630001 chr2L_17630001 RAL-223 653 chr2L 17684964 17684979 chr2L 17685125 17685140 7 161 9.5 12.0 10.8 0.6 176 chr2L 17684964 intron CadN - chr2L 17685052 intron CadN - chr2L 17685140 intron CadN - chr2L_7_17685001 chr2L_17685001 RAL-223 654 chr2L 17687468 17687517 chr2L 17692263 17692312 F-element 21 4795 9.5 5.0 7.2 2.6 4844 chr2L 17687468 intron CadN - chr2L 17689890 intron CadN - chr2L 17692312 intron CadN - chr2L_21_17685001 chr2L_17685001 RAL-223 655 chr2L 17723742 17723802 chr2L 17723885 17723945 19 143 5.0 6.0 5.5 2.9 203 chr2L 17723742 intron CadN - chr2L 17723844 intron CadN - chr2L 17723945 intron CadN - chr2L_19_17720001 chr2L_17720001 RAL-223 656 chr2L 17727822 17727867 chr2L 17729335 17729384 hobo 13 1516 8.5 11.0 9.8 1.2 1562 chr2L 17727822 intron CadN - chr2L 17728603 intron CadN - chr2L 17729384 intron CadN - chr2L_13_17725001 chr2L_17725001 RAL-223 657 chr2L 17819870 17819944 chr2L 17825123 17825196 copia 18 5253 6.0 6.5 6.2 2.5 5326 chr2L 17819870 intron CadN2 - chr2L 17822533 intron CadN2 - chr2L 17825196 intron CadN2 - chr2L_18_17820001 chr2L_17820001 RAL-223 658 chr2L 17863591 17863613 chr2L 17863796 17863818 5 205 4.0 6.5 5.2 0.8 227 chr2L 17863591 intron CadN2 - chr2L 17863704 intron CadN2 - chr2L 17863818 intron CadN2 - chr2L_5_17860001 chr2L_17860001 RAL-223 659 chr2L 17907741 17907831 chr2L 17908121 17908171 15 348 0.0 0.5 0.2 12.5 430 chr2L 17907741 intergenic not near genes chr2L 17907956 intergenic not near genes chr2L 17908171 intergenic not near genes chr2L_15_17905001 chr2L_17905001 RAL-223 660 chr2L 17911915 17911985 chr2L 17914143 17914213 pogo 22 2227 3.5 9.5 6.5 2.9 2298 chr2L 17911915 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914213 intergenic CG43271 - chr2L_22_17910001 chr2L_17910001 RAL-223 661 chr2L 17951906 17951962 chr2L 17953423 17953479 hobo 36 1517 12.0 14.5 13.2 2.5 1573 chr2L 17951906 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953479 intergenic not near genes chr2L_36_17950001 chr2L_17950001 RAL-223 662 chr2L 17987867 17987937 chr2L 17991916 17991986 34 4050 54.0 58.0 56.0 0.6 4119 chr2L 17987867 exon CG5681 + chr2L 17989926 intergenic Prosbeta5R2 + chr2L 17991986 intergenic Prosbeta5R2 + chr2L_34_17985001 chr2L_17985001 RAL-223 663 chr2L 18020696 18020767 chr2L 18020833 18020904 27 135 5.5 8.0 6.8 3.5 208 chr2L 18020696 intron rdo + chr2L 18020800 intron rdo + chr2L 18020904 intron rdo + chr2L_27_18020001 chr2L_18020001 RAL-223 664 chr2L 18032402 18032480 chr2L 18032738 18032816 31 335 7.5 7.5 7.5 3.6 414 chr2L 18032402 intron rdo + chr2L 18032609 intron rdo + chr2L 18032816 intron rdo + chr2L_31_18030001 chr2L_18030001 RAL-223 665 chr2L 18051831 18051899 chr2L 18061028 18061096 roo 19 9196 8.5 9.5 9.0 1.9 9265 chr2L 18051831 intron rdo + chr2L 18056464 intron rdo + chr2L 18061096 intron rdo + chr2L_19_18055001 chr2L_18055001 RAL-223 666 chr2L 18102996 18103066 chr2L 18103133 18103203 16 136 4.5 6.5 5.5 2.5 207 chr2L 18102996 intergenic not near genes chr2L 18103100 intergenic not near genes chr2L 18103203 intergenic not near genes chr2L_16_18100001 chr2L_18100001 RAL-223 667 chr2L 18134974 18135004 chr2L 18135112 18135142 5 138 7.5 3.5 5.5 0.8 168 chr2L 18134974 intron kel - chr2L 18135058 intron kel - chr2L 18135142 intron kel - chr2L_5_18135001 chr2L_18135001 RAL-223 668 chr2L 18250517 18250533 chr2L 18250679 18250695 8 162 22.5 8.0 15.2 0.5 178 chr2L 18250517 intron CG42750 - chr2L 18250606 intron CG42750 - chr2L 18250695 intron CG42750 - chr2L_8_18250001 chr2L_18250001 RAL-223 669 chr2L 18254769 18254833 chr2L 18254919 18254983 27 150 9.5 8.0 8.8 2.8 214 chr2L 18254769 intron CG42750 - chr2L 18254876 intron CG42750 - chr2L 18254983 intron CG42750 - chr2L_27_18250001 chr2L_18250001 RAL-223 670 chr2L 18264019 18264087 chr2L 18264146 18264214 17 127 10.0 6.5 8.2 1.8 195 chr2L 18264019 intron CG42750 - chr2L 18264116 intron CG42750 - chr2L 18264214 intron CG42750 - chr2L_17_18260001 chr2L_18260001 RAL-223 671 chr2L 18273997 18274065 chr2L 18274133 18274201 24 136 10.5 8.0 9.2 2.4 204 chr2L 18273997 intron CG42750 - chr2L 18274099 intron CG42750 - chr2L 18274201 intron CG42750 - chr2L_24_18270001 chr2L_18270001 RAL-223 672 chr2L 18296912 18296950 chr2L 18297039 18297077 16 123 10.5 10.0 10.2 1.4 165 chr2L 18296912 exon CG5790 + chr2L 18296994 exon CG5790 + chr2L 18297077 exon CG5790 + chr2L_16_18295001 chr2L_18295001 RAL-223 673 chr2L 18300222 18300259 chr2L 18300353 18300381 9 121 6.0 16.0 11.0 0.8 159 chr2L 18300222 intergenic not near genes chr2L 18300302 intergenic not near genes chr2L 18300381 intergenic not near genes chr2L_9_18300001 chr2L_18300001 RAL-223 674 chr2L 18303933 18304001 chr2L 18304074 18304142 20 141 5.0 6.0 5.5 3.1 209 chr2L 18303933 intergenic not near genes chr2L 18304038 intergenic not near genes chr2L 18304142 intergenic not near genes chr2L_20_18300001 chr2L_18300001 RAL-223 675 chr2L 18364220 18364292 chr2L 18364370 18364442 20 150 3.5 7.5 5.5 3.1 222 chr2L 18364220 intron Fas3 + chr2L 18364331 intron Fas3 + chr2L 18364442 intron Fas3 + chr2L_20_18360001 chr2L_18360001 RAL-223 676 chr2L 18407991 18408039 chr2L 18412825 18412873 Doc 25 4834 11.5 9.5 10.5 2.2 4882 chr2L 18407991 intergenic not near genes chr2L 18410432 intergenic not near genes chr2L 18412873 intergenic not near genes chr2L_25_18410001 chr2L_18410001 RAL-223 677 chr2L 18423806 18423873 chr2L 18423947 18424014 14 141 5.0 6.5 5.8 2.1 208 chr2L 18423806 intergenic not near genes chr2L 18423910 intergenic not near genes chr2L 18424014 intergenic not near genes chr2L_14_18420001 chr2L_18420001 RAL-223 678 chr2L 18462312 18462479 chr2L 18462473 18462607 11 154 0.0 0.0 0.0 11.0 295 chr2L 18462312 intron let-7-C + chr2L 18462460 intron let-7-C + chr2L 18462607 intron let-7-C + chr2L_11_18460001 chr2L_18460001 RAL-223 679 chr2L 18480383 18480454 chr2L 18480513 18480584 30 128 5.5 9.5 7.5 3.5 201 chr2L 18480383 intron CG10283 - chr2L 18480484 intron CG10283 - chr2L 18480584 intron CG10283 - chr2L_30_18480001 chr2L_18480001 RAL-223 680 chr2L 18531822 18531897 chr2L 18531951 18532025 17 129 8.0 7.0 7.5 2.0 203 chr2L 18531822 3` UTR CG10211 + chr2L 18531924 3` UTR CG10211 + chr2L 18532025 intergenic CG10211 + chr2L_17_18530001 chr2L_18530001 RAL-223 681 chr2L 18538549 18538599 chr2L 18538681 18538690 13 128 1.5 9.5 5.5 2.0 141 chr2L 18538549 intron Pde11 - chr2L 18538620 intron Pde11 - chr2L 18538690 intron Pde11 - chr2L_13_18535001 chr2L_18535001 RAL-223 682 chr2L 18565531 18565547 chr2L 18566015 18566031 5 483 18.5 9.5 14.0 0.3 500 chr2L 18565531 intron Pde11 - chr2L 18565781 intron Pde11 - chr2L 18566031 intron Pde11 - chr2L_5_18565001 chr2L_18565001 RAL-223 683 chr2L 18565548 18565597 chr2L 18566011 18566081 24 480 9.5 8.0 8.8 2.4 533 chr2L 18565548 intron Pde11 - chr2L 18565814 intron Pde11 - chr2L 18566081 intron Pde11 - chr2L_24_18565001 chr2L_18565001 RAL-223 684 chr2L 18571548 18571572 chr2L 18571798 18571823 6 248 46.0 46.0 46.0 0.1 275 chr2L 18571548 intron Pde11 - chr2L 18571686 intron Pde11 - chr2L 18571823 intron Pde11 - chr2L_6_18570001 chr2L_18570001 RAL-223 685 chr2L 18575579 18575591 chr2L 18575726 18575738 7 147 30.0 0.0 15.0 0.4 159 chr2L 18575579 intron Pde11 - chr2L 18575658 intron Pde11 - chr2L 18575738 intron Pde11 - chr2L_7_18575001 chr2L_18575001 RAL-223 686 chr2L 18571238 18571305 chr2L 18579277 18579339 32 8035 47.5 60.5 54.0 0.6 8101 chr2L 18571238 intron Pde11 - chr2L 18575288 intron Pde11 - chr2L 18579339 intron Pde11 - chr2L_32_18575001 chr2L_18575001 RAL-223 687 chr2L 18580766 18580796 chr2L 18580897 18580927 12 131 13.0 6.5 9.8 1.1 161 chr2L 18580766 intron Pde11 - chr2L 18580846 intron Pde11 - chr2L 18580927 intron Pde11 - chr2L_12_18580001 chr2L_18580001 RAL-223 688 chr2L 18737034 18737091 chr2L 18737205 18737262 23 171 7.0 10.0 8.5 2.4 228 chr2L 18737034 intergenic not near genes chr2L 18737148 intergenic not near genes chr2L 18737262 intergenic not near genes chr2L_23_18735001 chr2L_18735001 RAL-223 689 chr2L 18766406 18766472 chr2L 18766577 18766639 6 170 2.0 0.0 1.0 3.0 233 chr2L 18766406 intron ham - chr2L 18766522 intron ham - chr2L 18766639 intron ham - chr2L_6_18765001 chr2L_18765001 RAL-223 690 chr2L 18812518 18812582 chr2L 18812820 18812895 37 311 0.0 8.0 4.0 7.4 377 chr2L 18812518 intergenic CG17325 +,CG42305 + chr2L 18812706 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812895 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_37_18810001 chr2L_18810001 RAL-223 691 chr2L 18845232 18845299 chr2L 18845368 18845403 13 130 7.5 5.0 6.2 1.8 171 chr2L 18845232 5` UTR CG17321 + chr2L 18845318 5` UTR CG17321 + chr2L 18845403 5` UTR CG17321 + chr2L_13_18845001 chr2L_18845001 RAL-223 692 chr2L 18880962 18881021 chr2L 18881093 18881158 19 134 9.5 7.0 8.2 2.1 196 chr2L 18880962 5` UTR tup - chr2L 18881060 5` UTR tup - chr2L 18881158 5` UTR tup - chr2L_19_18880001 chr2L_18880001 RAL-223 693 chr2L 18902574 18902636 chr2L 18902905 18902967 17 330 9.5 11.0 10.2 1.5 393 chr2L 18902574 intergenic not near genes chr2L 18902770 intergenic not near genes chr2L 18902967 intergenic not near genes chr2L_17_18900001 chr2L_18900001 RAL-223 694 chr2L 18926529 18926585 chr2L 18926685 18926742 14 155 6.5 3.0 4.8 2.4 213 chr2L 18926529 intron ssp3 - chr2L 18926636 intron ssp3 - chr2L 18926742 intron ssp3 - chr2L_14_18925001 chr2L_18925001 RAL-223 695 chr2L 18955648 18955713 chr2L 18955785 18955850 29 136 9.0 10.0 9.5 2.8 202 chr2L 18955648 3` UTR CG10623 - chr2L 18955749 3` UTR CG10623 - chr2L 18955850 3` UTR CG10623 - chr2L_29_18955001 chr2L_18955001 RAL-223 696 chr2L 18981346 18981420 chr2L 18981479 18981553 32 132 2.5 5.0 3.8 6.7 207 chr2L 18981346 intron Swip-1 - chr2L 18981450 intron Swip-1 - chr2L 18981553 intron Swip-1 - chr2L_32_18980001 chr2L_18980001 RAL-223 697 chr2L 19048786 19048862 chr2L 19048920 19048996 24 134 7.5 5.5 6.5 3.2 210 chr2L 19048786 3` UTR Acn + chr2L 19048891 intergenic Acn +,CG10470 + chr2L 19048996 intergenic CG10470 +,Acn + chr2L_24_19045001 chr2L_19045001 RAL-223 698 chr2L 19070232 19070235 chr2L 19070374 19070378 4 143 24.0 10.5 17.2 0.2 146 chr2L 19070232 intergenic CG10702 - chr2L 19070305 intergenic CG10702 - chr2L 19070378 intergenic not near genes chr2L_4_19070001 chr2L_19070001 RAL-223 699 chr2L 19070239 19070298 chr2L 19070361 19070441 29 137 8.5 8.0 8.2 3.2 202 chr2L 19070239 intergenic CG10702 - chr2L 19070340 intergenic CG10702 - chr2L 19070441 intergenic not near genes chr2L_29_19070001 chr2L_19070001 RAL-223 700 chr2L 19077854 19077926 chr2L 19077986 19078058 31 130 7.0 5.5 6.2 4.3 204 chr2L 19077854 exon CG10700 - chr2L 19077956 exon CG10700 - chr2L 19078058 exon CG10700 - chr2L_31_19075001 chr2L_19075001 RAL-223 701 chr2L 19095774 19095806 chr2L 19095974 19096006 10 198 11.5 7.5 9.5 1.0 232 chr2L 19095774 intron Lim3 - chr2L 19095890 intron Lim3 - chr2L 19096006 intron Lim3 - chr2L_10_19095001 chr2L_19095001 RAL-223 702 chr2L 19095809 19095847 chr2L 19095968 19096047 12 196 7.0 6.0 6.5 1.6 238 chr2L 19095809 intron Lim3 - chr2L 19095928 intron Lim3 - chr2L 19096047 intron Lim3 - chr2L_12_19095001 chr2L_19095001 RAL-223 703 chr2L 19101792 19101858 chr2L 19101928 19101994 33 136 6.0 11.5 8.8 3.4 202 chr2L 19101792 intron Lim3 - chr2L 19101893 intron Lim3 - chr2L 19101994 intron Lim3 - chr2L_33_19100001 chr2L_19100001 RAL-223 704 chr2L 19121855 19121896 chr2L 19122002 19122043 20 147 9.0 16.0 12.5 1.5 188 chr2L 19121855 3` UTR l(2)37Cc - chr2L 19121949 3` UTR l(2)37Cc - chr2L 19122043 3` UTR l(2)37Cc - chr2L_20_19120001 chr2L_19120001 RAL-223 705 chr2L 19144899 19145158 chr2L 19145027 19145295 29 130 14.0 9.5 11.8 2.3 396 chr2L 19144899 intron brat + chr2L 19145097 intron brat + chr2L 19145295 intron brat + chr2L_29_19145001 chr2L_19145001 RAL-223 706 chr2L 19147324 19147392 chr2L 19154409 19154477 297 31 7084 11.0 9.0 10.0 2.8 7153 chr2L 19147324 intron brat + chr2L 19150900 intron brat + chr2L 19154477 intron brat + chr2L_31_19150001 chr2L_19150001 RAL-223 707 chr2L 19156851 19156912 chr2L 19156974 19157051 28 133 11.0 2.5 6.8 3.6 200 chr2L 19156851 intron brat + chr2L 19156951 intron brat + chr2L 19157051 intron brat + chr2L_28_19155001 chr2L_19155001 RAL-223 708 chr2L 19209574 19209646 chr2L 19209709 19209781 20 134 7.0 4.0 5.5 3.1 207 chr2L 19209574 intergenic not near genes chr2L 19209678 intergenic not near genes chr2L 19209781 intergenic not near genes chr2L_20_19205001 chr2L_19205001 RAL-223 709 chr2L 19331623 19331695 chr2L 19331752 19331806 27 124 6.5 6.0 6.2 3.8 183 chr2L 19331623 intergenic not near genes chr2L 19331714 intergenic not near genes chr2L 19331806 intergenic not near genes chr2L_27_19330001 chr2L_19330001 RAL-223 710 chr2L 19344974 19344989 chr2L 19357233 19357248 blood 9 12259 22.5 12.5 17.5 0.5 12274 chr2L 19344974 intron dnt - chr2L 19351111 intron dnt - chr2L 19357248 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-223 711 chr2L 19344991 19345035 chr2L 19357230 19357294 blood 23 12255 11.0 12.5 11.8 1.8 12303 chr2L 19344991 intron dnt - chr2L 19351142 intron dnt - chr2L 19357294 intron dnt - chr2L_23_19350001 chr2L_19350001 RAL-223 712 chr2L 19357496 19357565 chr2L 19357636 19357705 22 139 13.0 8.0 10.5 1.9 209 chr2L 19357496 intron dnt - chr2L 19357600 intron dnt - chr2L 19357705 intron dnt - chr2L_22_19355001 chr2L_19355001 RAL-223 713 chr2L 19373383 19373457 chr2L 19373769 19373843 34 380 10.5 11.5 11.0 2.8 460 chr2L 19373383 intergenic not near genes chr2L 19373613 intergenic not near genes chr2L 19373843 intergenic not near genes chr2L_34_19370001 chr2L_19370001 RAL-223 714 chr2L 19376301 19376375 chr2L 19376736 19376809 28 434 1.0 5.0 3.0 7.0 508 chr2L 19376301 intergenic not near genes chr2L 19376555 intergenic not near genes chr2L 19376809 intergenic not near genes chr2L_28_19375001 chr2L_19375001 RAL-223 715 chr2L 19405572 19405642 chr2L 19405712 19405782 20 140 6.0 2.5 4.2 3.8 210 chr2L 19405572 intron Pax - chr2L 19405677 intron Pax - chr2L 19405782 intron Pax - chr2L_20_19405001 chr2L_19405001 RAL-223 716 chr2L 19407666 19407739 chr2L 19407913 19407986 38 246 10.5 6.0 8.2 4.1 320 chr2L 19407666 intron Pax - chr2L 19407826 intron Pax - chr2L 19407986 intron Pax - chr2L_38_19405001 chr2L_19405001 RAL-223 717 chr2L 19415519 19415599 chr2L 19415757 19415837 39 238 8.0 9.5 8.8 4.0 318 chr2L 19415519 intron Pax - chr2L 19415678 intron Pax - chr2L 19415837 intron Pax - chr2L_39_19415001 chr2L_19415001 RAL-223 718 chr2L 19437471 19437530 chr2L 19437613 19437672 20 142 3.0 3.5 3.2 4.8 201 chr2L 19437471 intron CG10237 - chr2L 19437572 intron CG10237 - chr2L 19437672 exon CG10237 - chr2L_20_19435001 chr2L_19435001 RAL-223 719 chr2L 19441019 19441089 chr2L 19441146 19441206 34 126 10.5 15.5 13.0 2.4 187 chr2L 19441019 intron CG10237 - chr2L 19441112 intron CG10237 - chr2L 19441206 5` UTR CG10237 - chr2L_34_19440001 chr2L_19440001 RAL-223 720 chr2L 19469123 19469198 chr2L 19469258 19469333 32 135 3.5 6.5 5.0 5.3 210 chr2L 19469123 intergenic CR45722 + chr2L 19469228 5` UTR CR45722 + chr2L 19469333 5` UTR CR45722 + chr2L_32_19465001 chr2L_19465001 RAL-223 721 chr2L 19541579 19541638 chr2L 19541714 19541767 25 134 0.0 3.0 1.5 10.0 188 chr2L 19541579 intergenic CG13081 + chr2L 19541673 intergenic CG13081 + chr2L 19541767 intergenic CG13081 + chr2L_25_19540001 chr2L_19540001 RAL-223 722 chr2L 19544561 19544587 chr2L 19544683 19544705 14 122 15.0 9.5 12.2 1.1 144 chr2L 19544561 exon ref(2)P + chr2L 19544633 exon ref(2)P + chr2L 19544705 exon ref(2)P + chr2L_14_19540001 chr2L_19540001 RAL-223 723 chr2L 19544588 19544604 chr2L 19544680 19544726 9 115 11.0 9.0 10.0 0.8 138 chr2L 19544588 exon ref(2)P + chr2L 19544657 exon ref(2)P + chr2L 19544726 exon ref(2)P + chr2L_9_19540001 chr2L_19540001 RAL-223 724 chr2L 19557777 19557983 chr2L 19557919 19558113 19 141 0.5 0.5 0.5 12.7 336 chr2L 19557777 intergenic Tep5 + chr2L 19557945 intergenic Tep5 + chr2L 19558113 exon Tep5 + chr2L_19_19555001 chr2L_19555001 RAL-223 725 chr2L 19558480 19558545 chr2L 19558634 19558699 50 153 0.0 13.0 6.5 6.7 219 chr2L 19558480 intron Tep5 + chr2L 19558590 intron Tep5 + chr2L 19558699 intron Tep5 + chr2L_50_19555001 chr2L_19555001 RAL-223 726 chr2L 19559959 19560038 chr2L 19560262 19560340 33 303 6.0 11.0 8.5 3.5 381 chr2L 19559959 exon Tep5 + chr2L 19560150 exon Tep5 + chr2L 19560340 intron Tep5 + chr2L_33_19560001 chr2L_19560001 RAL-223 727 chr2L 19560795 19560848 chr2L 19560925 19560993 14 131 13.0 0.0 6.5 1.9 198 chr2L 19560795 exon Tep5 + chr2L 19560894 exon Tep5 + chr2L 19560993 exon Tep5 + chr2L_14_19560001 chr2L_19560001 RAL-223 728 chr2L 19560852 19560865 chr2L 19560997 19561010 17 145 7.0 11.0 9.0 1.7 158 chr2L 19560852 intron Tep5 + chr2L 19560931 exon Tep5 + chr2L 19561010 exon Tep5 + chr2L_17_19560001 chr2L_19560001 RAL-223 729 chr2L 19561290 19561367 chr2L 19561483 19561558 29 191 6.0 8.0 7.0 3.6 268 chr2L 19561290 exon Tep5 + chr2L 19561424 exon Tep5 + chr2L 19561558 exon Tep5 + chr2L_29_19560001 chr2L_19560001 RAL-223 730 chr2L 19587747 19587819 chr2L 19587894 19587966 29 146 7.0 7.5 7.2 3.5 219 chr2L 19587747 intron Lar + chr2L 19587856 intron Lar + chr2L 19587966 intron Lar + chr2L_29_19585001 chr2L_19585001 RAL-223 731 chr2L 19608560 19608612 chr2L 19608701 19608751 21 140 6.0 7.0 6.5 2.8 191 chr2L 19608560 intron Lar + chr2L 19608656 intron Lar + chr2L 19608751 intron Lar + chr2L_21_19605001 chr2L_19605001 RAL-223 732 chr2L 19652525 19652592 chr2L 19674011 19674078 opus 24 21486 8.5 6.0 7.2 2.9 21553 chr2L 19652525 intron Lar + chr2L 19663302 intron Lar + chr2L 19674078 intron Lar + chr2L_24_19660001 chr2L_19660001 RAL-223 733 chr2L 19703499 19703555 chr2L 19712685 19712741 roo 20 9186 10.0 9.0 9.5 1.9 9242 chr2L 19703499 intron Lar + chr2L 19708120 intron Lar + chr2L 19712741 intron Lar + chr2L_20_19705001 chr2L_19705001 RAL-223 734 chr2L 19718483 19718513 chr2L 19718621 19718651 13 137 19.0 18.5 18.8 0.7 168 chr2L 19718483 intron Lar + chr2L 19718567 intron Lar + chr2L 19718651 intron Lar + chr2L_13_19715001 chr2L_19715001 RAL-223 735 chr2L 19762771 19762833 chr2L 19763053 19763125 pogo 30 289 8.5 7.0 7.8 3.4 354 chr2L 19762771 exon fbp - chr2L 19762948 intron fbp - chr2L 19763125 intron fbp - chr2L_30_19760001 chr2L_19760001 RAL-223 736 chr2L 19776611 19776660 chr2L 19776741 19776790 21 129 20.5 4.5 12.5 1.6 179 chr2L 19776611 3` UTR CdGAPr - chr2L 19776700 3` UTR CdGAPr - chr2L 19776790 3` UTR CdGAPr - chr2L_21_19775001 chr2L_19775001 RAL-223 737 chr2L 19823216 19823220 chr2L 19823347 19823351 4 131 20.5 0.5 10.5 0.3 135 chr2L 19823216 intron sick + chr2L 19823284 intron sick + chr2L 19823351 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-223 738 chr2L 19823225 19823298 chr2L 19823346 19823437 24 137 6.5 1.0 3.8 5.0 212 chr2L 19823225 intron sick + chr2L 19823331 intron sick + chr2L 19823437 intron sick + chr2L_24_19820001 chr2L_19820001 RAL-223 739 chr2L 19826530 19826593 chr2L 19826659 19826722 17 129 10.0 6.0 8.0 1.9 192 chr2L 19826530 intron sick + chr2L 19826626 intron sick + chr2L 19826722 intron sick + chr2L_17_19825001 chr2L_19825001 RAL-223 740 chr2L 19856347 19856415 chr2L 19856642 19856710 29 292 9.5 7.0 8.2 3.2 363 chr2L 19856347 intron sick + chr2L 19856528 intron sick + chr2L 19856710 intron sick + chr2L_29_19855001 chr2L_19855001 RAL-223 741 chr2L 19871551 19871565 chr2L 19871688 19871702 6 137 0.5 14.5 7.5 0.7 151 chr2L 19871551 intron sick + chr2L 19871626 intron sick + chr2L 19871702 intron sick + chr2L_6_19870001 chr2L_19870001 RAL-223 742 chr2L 19887752 19887805 chr2L 19887908 19887961 15 155 8.0 7.5 7.8 1.7 209 chr2L 19887752 intron sick + chr2L 19887856 intron sick + chr2L 19887961 intron sick + chr2L_15_19885001 chr2L_19885001 RAL-223 743 chr2L 19888244 19888315 chr2L 19888374 19888445 27 128 9.0 5.0 7.0 3.4 201 chr2L 19888244 intron sick + chr2L 19888344 intron sick + chr2L 19888445 intron sick + chr2L_27_19885001 chr2L_19885001 RAL-223 744 chr2L 19911252 19911315 chr2L 19911382 19911453 20 138 8.0 5.5 6.8 2.6 201 chr2L 19911252 intron,3` UTR sick +,CR43097 - chr2L 19911352 intron,3` UTR sick +,CR43097 - chr2L 19911453 intron,3` UTR sick +,CR43097 - chr2L_20_19910001 chr2L_19910001 RAL-223 745 chr2L 19913016 19913059 chr2L 19913512 19913555 12 495 10.0 0.0 5.0 2.0 539 chr2L 19913016 intron,3` UTR sick +,Victoria - chr2L 19913286 intron,exon sick +,Victoria - chr2L 19913555 intron sick + chr2L_12_19910001 chr2L_19910001 RAL-223 746 chr2L 19937998 19938014 chr2L 19938136 19938152 7 138 14.0 3.0 8.5 0.7 154 chr2L 19937998 intron sick + chr2L 19938075 intron sick + chr2L 19938152 intron sick + chr2L_7_19935001 chr2L_19935001 RAL-223 747 chr2L 19947642 19947676 chr2L 19947769 19947809 7 132 7.0 4.0 5.5 1.1 167 chr2L 19947642 intron sick + chr2L 19947726 intron sick + chr2L 19947809 intron sick + chr2L_7_19945001 chr2L_19945001 RAL-223 748 chr2L 19983418 19983495 chr2L 19983565 19983642 38 146 7.0 14.0 10.5 3.3 224 chr2L 19983418 intron CG43861 - chr2L 19983530 intron CG43861 - chr2L 19983642 intron CG43861 - chr2L_38_19980001 chr2L_19980001 RAL-223 749 chr2L 19994605 19994677 chr2L 19994735 19994783 23 121 5.5 3.0 4.2 4.4 178 chr2L 19994605 intron CG43861 - chr2L 19994694 intron CG43861 - chr2L 19994783 intron CG43861 - chr2L_23_19990001 chr2L_19990001 RAL-223 750 chr2L 20005832 20005896 chr2L 20010958 20011022 flea 28 5125 8.5 11.5 10.0 2.5 5190 chr2L 20005832 intron CG43861 - chr2L 20008427 intron CG43861 - chr2L 20011022 intron CG43861 - chr2L_28_20005001 chr2L_20005001 RAL-223 751 chr2L 20011278 20011309 chr2L 20011406 20011431 12 126 12.0 12.0 12.0 0.9 153 chr2L 20011278 intron CG43861 - chr2L 20011354 intron CG43861 - chr2L 20011431 intron CG43861 - chr2L_12_20010001 chr2L_20010001 RAL-223 752 chr2L 20036481 20036549 chr2L 20036615 20036683 22 134 9.5 4.5 7.0 2.8 202 chr2L 20036481 intron sNPF + chr2L 20036582 intron sNPF + chr2L 20036683 intron sNPF + chr2L_22_20035001 chr2L_20035001 RAL-223 753 chr2L 20041395 20041459 chr2L 20041530 20041579 26 132 12.5 8.0 10.2 2.3 184 chr2L 20041395 intron sNPF + chr2L 20041487 intron sNPF + chr2L 20041579 intron sNPF + chr2L_26_20040001 chr2L_20040001 RAL-223 754 chr2L 20041996 20042064 chr2L 20042143 20042211 19 145 10.0 7.5 8.8 1.9 215 chr2L 20041996 intron sNPF + chr2L 20042104 intron sNPF + chr2L 20042211 intron sNPF + chr2L_19_20040001 chr2L_20040001 RAL-223 755 chr2L 20046511 20046520 chr2L 20046650 20046659 5 139 17.5 8.0 12.8 0.4 148 chr2L 20046511 intron sNPF + chr2L 20046585 intron sNPF + chr2L 20046659 intron sNPF + chr2L_5_20045001 chr2L_20045001 RAL-223 756 chr2L 20046522 20046586 chr2L 20046645 20046689 24 130 6.5 6.0 6.2 3.3 167 chr2L 20046522 intron sNPF + chr2L 20046606 intron sNPF + chr2L 20046689 intron sNPF + chr2L_24_20045001 chr2L_20045001 RAL-223 757 chr2L 20079474 20079518 chr2L 20079645 20079689 19 171 15.5 7.0 11.2 1.6 215 chr2L 20079474 intron,intron neb +,fok - chr2L 20079582 intron,intron neb +,fok - chr2L 20079689 intron,intron neb +,fok - chr2L_19_20075001 chr2L_20075001 RAL-223 758 chr2L 20085442 20085495 chr2L 20085584 20085637 16 140 0.0 12.5 6.2 2.2 195 chr2L 20085442 intron neb + chr2L 20085540 intron neb + chr2L 20085637 intron neb + chr2L_16_20085001 chr2L_20085001 RAL-223 759 chr2L 20087214 20087275 chr2L 20087360 20087421 17 146 6.5 6.0 6.2 2.4 207 chr2L 20087214 intron neb + chr2L 20087318 intron neb + chr2L 20087421 intron neb + chr2L_17_20085001 chr2L_20085001 RAL-223 760 chr2L 20127933 20128004 chr2L 20128067 20128138 18 134 4.0 4.0 4.0 3.6 205 chr2L 20127933 intergenic not near genes chr2L 20128036 intergenic not near genes chr2L 20128138 intergenic not near genes chr2L_18_20125001 chr2L_20125001 RAL-223 761 chr2L 20225588 20225617 chr2L 20225716 20225745 15 128 4.5 9.5 7.0 1.9 157 chr2L 20225588 intergenic not near genes chr2L 20225666 intergenic not near genes chr2L 20225745 intergenic not near genes chr2L_15_20225001 chr2L_20225001 RAL-223 762 chr2L 20245844 20245908 chr2L 20249555 20249619 34 3712 62.0 66.0 64.0 0.5 3775 chr2L 20245844 intergenic not near genes chr2L 20247732 intergenic CR40341 + chr2L 20249619 3` UTR CR40172 - chr2L_34_20245001 chr2L_20245001 RAL-223 763 chr2L 20252480 20252556 chr2L 20252612 20252688 35 132 8.0 9.0 8.5 3.7 208 chr2L 20252480 intergenic not near genes chr2L 20252584 intergenic not near genes chr2L 20252688 intergenic not near genes chr2L_35_20250001 chr2L_20250001 RAL-223 764 chr2L 20272083 20272134 chr2L 20282829 20282895 copia 34 10761 12.5 10.5 11.5 2.7 10812 chr2L 20272083 intergenic not near genes chr2L 20277489 intergenic not near genes chr2L 20282895 intergenic not near genes chr2L_34_20275001 chr2L_20275001 RAL-223 765 chr2L 20285296 20285367 chr2L 20285465 20285536 38 169 10.0 12.0 11.0 3.2 240 chr2L 20285296 intergenic not near genes chr2L 20285416 intergenic not near genes chr2L 20285536 intergenic not near genes chr2L_38_20285001 chr2L_20285001 RAL-223 766 chr2L 20303164 20303174 chr2L 20310682 20310692 blood 4 7518 0.5 15.0 7.8 0.5 7528 chr2L 20303164 intergenic not near genes chr2L 20306928 intergenic not near genes chr2L 20310692 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-223 767 chr2L 20310830 20310892 chr2L 20310960 20311011 13 129 4.0 7.5 5.8 1.9 181 chr2L 20310830 intergenic spir + chr2L 20310920 intergenic spir + chr2L 20311011 intergenic spir + chr2L_13_20310001 chr2L_20310001 RAL-223 768 chr2L 20319990 20320064 chr2L 20320144 20320233 25 164 6.0 0.0 3.0 6.2 243 chr2L 20319990 intron spir + chr2L 20320112 intron spir + chr2L 20320233 intron spir + chr2L_25_20320001 chr2L_20320001 RAL-223 769 chr2L 20326853 20326878 chr2L 20326981 20326982 14 126 12.5 10.0 11.2 1.1 129 chr2L 20326853 intron spir + chr2L 20326918 intron spir + chr2L 20326982 intron spir + chr2L_14_20325001 chr2L_20325001 RAL-223 770 chr2L 20326879 20326913 chr2L 20326974 20327040 20 125 6.5 9.0 7.8 2.3 161 chr2L 20326879 intron spir + chr2L 20326960 intron spir + chr2L 20327040 intron spir + chr2L_20_20325001 chr2L_20325001 RAL-223 771 chr2L 20372171 20372223 chr2L 20372471 20372502 pogo 13 298 7.5 7.0 7.2 1.6 331 chr2L 20372171 intergenic Ugt37a1 - chr2L 20372336 intergenic Ugt37a1 - chr2L 20372502 exon Ugt37a1 - chr2L_13_20370001 chr2L_20370001 RAL-223 772 chr2L 20498641 20498708 chr2L 20498790 20498857 25 147 7.5 8.0 7.8 2.8 216 chr2L 20498641 intergenic not near genes chr2L 20498749 intergenic not near genes chr2L 20498857 intergenic not near genes chr2L_25_20495001 chr2L_20495001 RAL-223 773 chr2L 20513549 20513585 chr2L 20513691 20513727 13 142 10.0 6.0 8.0 1.4 178 chr2L 20513549 intergenic CR45702 + chr2L 20513638 intergenic CR45702 + chr2L 20513727 intergenic CR45702 + chr2L_13_20510001 chr2L_20510001 RAL-223 774 chr2L 20568611 20568683 chr2L 20569051 20569123 X-element 19 438 5.5 4.5 5.0 3.2 512 chr2L 20568611 intron CR45347 + chr2L 20568867 intron CR45347 + chr2L 20569123 intron CR45347 + chr2L_19_20565001 chr2L_20565001 RAL-223 775 chr2L 20576177 20576242 chr2L 20583695 20583760 blood 29 7517 7.5 8.5 8.0 3.2 7583 chr2L 20576177 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583760 3` UTR CR44909 - chr2L_29_20575001 chr2L_20575001 RAL-223 776 chr2L 20596476 20596499 chr2L 20596588 20596631 5 127 11.5 4.0 7.8 0.6 155 chr2L 20596476 intron CR44909 - chr2L 20596554 intron CR44909 - chr2L 20596631 intron CR44909 - chr2L_5_20595001 chr2L_20595001 RAL-223 777 chr2L 20597042 20597109 chr2L 20597169 20597236 24 126 5.0 10.5 7.8 2.7 194 chr2L 20597042 intron CR44909 - chr2L 20597139 intron CR44909 - chr2L 20597236 intron CR44909 - chr2L_24_20595001 chr2L_20595001 RAL-223 778 chr2L 20611180 20611259 chr2L 20611320 20611378 12 139 1.5 3.5 2.5 3.4 198 chr2L 20611180 intron CR44909 - chr2L 20611279 intron CR44909 - chr2L 20611378 intron CR44909 - chr2L_12_20610001 chr2L_20610001 RAL-223 779 chr2L 20626063 20626131 chr2L 20626219 20626287 23 156 7.0 8.0 7.5 2.7 224 chr2L 20626063 3` UTR CR44909 - chr2L 20626175 3` UTR CR44909 - chr2L 20626287 intergenic CR44909 - chr2L_23_20625001 chr2L_20625001 RAL-223 780 chr2L 20668660 20668708 chr2L 20668786 20668804 5 120 11.0 11.0 11.0 0.4 144 chr2L 20668660 intron CG31678 - chr2L 20668732 intron CG31678 - chr2L 20668804 intron CG31678 - chr2L_5_20665001 chr2L_20665001 RAL-223 781 chr2L 20674781 20674859 chr2L 20674916 20674987 9 131 5.5 3.5 4.5 1.6 206 chr2L 20674781 intron CG31678 - chr2L 20674884 intron CG31678 - chr2L 20674987 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-223 782 chr2L 20715527 20715562 chr2L 20715652 20715690 18 128 18.5 9.5 14.0 1.2 163 chr2L 20715527 intergenic not near genes chr2L 20715608 intergenic not near genes chr2L 20715690 intergenic not near genes chr2L_18_20715001 chr2L_20715001 RAL-223 783 chr2L 20722315 20722382 chr2L 20722561 20722628 26 246 8.0 10.0 9.0 2.6 313 chr2L 20722315 5` UTR CR45306 + chr2L 20722472 intergenic CR45306 + chr2L 20722628 intergenic CR45306 + chr2L_26_20720001 chr2L_20720001 RAL-223 784 chr2L 20759131 20759188 chr2L 20759277 20759334 25 146 8.0 8.5 8.2 2.7 203 chr2L 20759131 intron dia + chr2L 20759232 intron dia + chr2L 20759334 intron dia + chr2L_25_20755001 chr2L_20755001 RAL-223 785 chr2L 20762622 20762635 chr2L 20762782 20762790 5 159 14.5 8.0 11.2 0.4 168 chr2L 20762622 intron dia + chr2L 20762706 intron dia + chr2L 20762790 intron dia + chr2L_5_20760001 chr2L_20760001 RAL-223 786 chr2L 20762637 20762683 chr2L 20762780 20762843 20 157 6.0 8.0 7.0 2.5 206 chr2L 20762637 intron dia + chr2L 20762740 intron dia + chr2L 20762843 intron dia + chr2L_20_20760001 chr2L_20760001 RAL-223 787 chr2L 20767140 20767218 chr2L 20767266 20767344 8 125 7.5 13.0 10.2 0.7 204 chr2L 20767140 3` UTR dia + chr2L 20767242 3` UTR dia + chr2L 20767344 3` UTR dia + chr2L_8_20765001 chr2L_20765001 RAL-223 788 chr2L 20804660 20804734 chr2L 20804795 20804869 30 134 4.5 11.0 7.8 3.4 209 chr2L 20804660 intron CG9328 + chr2L 20804764 intron CG9328 + chr2L 20804869 intron CG9328 + chr2L_30_20800001 chr2L_20800001 RAL-223 789 chr2L 20821452 20821522 chr2L 20821650 20821704 28 197 13.5 5.0 9.2 2.7 252 chr2L 20821452 intergenic not near genes chr2L 20821578 intergenic not near genes chr2L 20821704 intergenic not near genes chr2L_28_20820001 chr2L_20820001 RAL-223 790 chr2L 20835768 20835834 chr2L 20836535 20836601 Quasimodo 26 767 9.0 9.5 9.2 2.5 833 chr2L 20835768 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836601 intergenic Spn38F - chr2L_26_20835001 chr2L_20835001 RAL-223 791 chr2L 20891484 20891546 chr2L 20896635 20896691 jockey 27 5150 6.5 9.5 8.0 3.0 5207 chr2L 20891484 intron,intron CG43739 -,sky - chr2L 20894088 intron,intron CG43739 -,sky - chr2L 20896691 intron,intron CG43739 -,sky - chr2L_27_20890001 chr2L_20890001 RAL-223 792 chr2L 20967880 20967887 chr2L 20968023 20968030 8 143 21.5 11.0 16.2 0.5 150 chr2L 20967880 intron CG42238 - chr2L 20967955 intron CG42238 - chr2L 20968030 intron CG42238 - chr2L_8_20965001 chr2L_20965001 RAL-223 793 chr2L 20967888 20967957 chr2L 20968021 20968100 33 142 6.5 11.0 8.8 3.4 212 chr2L 20967888 intron CG42238 - chr2L 20967994 intron CG42238 - chr2L 20968100 intron CG42238 - chr2L_33_20965001 chr2L_20965001 RAL-223 794 chr2L 20976607 20976672 chr2L 20981472 20981516 X-element 29 4864 10.0 11.0 10.5 2.5 4909 chr2L 20976607 intron CG42238 - chr2L 20979062 intron CG42238 - chr2L 20981516 intron CG42238 - chr2L_29_20975001 chr2L_20975001 RAL-223 795 chr2L 20982218 20982290 chr2L 20982360 20982433 35 143 9.0 8.0 8.5 3.7 215 chr2L 20982218 intron CG42238 - chr2L 20982326 intron CG42238 - chr2L 20982433 intron CG42238 - chr2L_35_20980001 chr2L_20980001 RAL-223 796 chr2L 21003508 21003579 chr2L 21003643 21003713 31 134 9.5 8.0 8.8 3.2 205 chr2L 21003508 intron CG42238 - chr2L 21003610 intron CG42238 - chr2L 21003713 intron CG42238 - chr2L_31_21000001 chr2L_21000001 RAL-223 797 chr2L 21020242 21020299 chr2L 21023969 21024000 NOF 24 3725 5.5 7.5 6.5 3.2 3758 chr2L 21020242 intron CG42238 - chr2L 21022121 intron CG42238 - chr2L 21024000 intron CG42238 - chr2L_24_21020001 chr2L_21020001 RAL-223 798 chr2L 21041091 21041157 chr2L 21049402 21049468 Tirant 39 8309 9.0 11.0 10.0 3.5 8377 chr2L 21041091 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049468 intron CG42238 - chr2L_39_21045001 chr2L_21045001 RAL-223 799 chr2L 21074877 21074941 chr2L 21075018 21075082 21 141 4.5 7.0 5.8 3.1 205 chr2L 21074877 intergenic not near genes chr2L 21074980 intergenic tadr + chr2L 21075082 intergenic tadr + chr2L_21_21070001 chr2L_21070001 RAL-223 800 chr2L 21113640 21113713 chr2L 21113783 21113843 38 141 7.0 11.0 9.0 3.8 203 chr2L 21113640 intron Nhe2 + chr2L 21113742 intron Nhe2 + chr2L 21113843 intron Nhe2 + chr2L_38_21110001 chr2L_21110001 RAL-223 801 chr2L 21169804 21169860 chr2L 21169936 21169992 18 132 10.5 13.0 11.8 1.4 188 chr2L 21169804 intron Acon + chr2L 21169898 intron Acon + chr2L 21169992 intron Acon + chr2L_18_21165001 chr2L_21165001 RAL-223 802 chr2L 21347508 21347569 chr2L 21355030 21355091 blood 26 7522 12.0 6.0 9.0 2.6 7583 chr2L 21347508 intron Tsp39D + chr2L 21351300 intron Tsp39D + chr2L 21355091 intron Tsp39D + chr2L_26_21350001 chr2L_21350001 RAL-223 803 chr2L 21355560 21355632 chr2L 21355755 21355827 22 195 6.5 4.5 5.5 3.4 267 chr2L 21355560 exon Tsp39D + chr2L 21355694 intron Tsp39D + chr2L 21355827 intron Tsp39D + chr2L_22_21355001 chr2L_21355001 RAL-223 804 chr2L 21396587 21396600 chr2L 21396872 21396885 7 285 2.0 16.5 9.2 0.7 298 chr2L 21396587 intergenic not near genes chr2L 21396736 intergenic not near genes chr2L 21396885 intergenic not near genes chr2L_7_21395001 chr2L_21395001 RAL-223 805 chr2L 21396601 21396611 chr2L 21396861 21396888 6 280 2.0 15.0 8.5 0.6 287 chr2L 21396601 intergenic not near genes chr2L 21396744 intergenic not near genes chr2L 21396888 intergenic not near genes chr2L_6_21395001 chr2L_21395001 RAL-223 806 chr2L 21596984 21597057 chr2L 21604778 21604851 roo 11 7794 7.0 5.5 6.2 1.5 7867 chr2L 21596984 intergenic not near genes chr2L 21600918 intergenic not near genes chr2L 21604851 intergenic not near genes chr2L_11_21600001 chr2L_21600001 RAL-223 807 chr2L 21653152 21653208 chr2L 21656506 21656562 invader4 27 3354 9.0 10.0 9.5 2.6 3410 chr2L 21653152 intergenic not near genes chr2L 21654857 intergenic not near genes chr2L 21656562 intergenic not near genes chr2L_27_21650001 chr2L_21650001 RAL-223 808 chr2L 21684257 21684322 chr2L 21684570 21684634 23 313 4.5 10.5 7.5 2.7 377 chr2L 21684257 intron CG31619 + chr2L 21684446 intron CG31619 + chr2L 21684634 5` UTR CG31619 + chr2L_23_21680001 chr2L_21680001 RAL-223 809 chr2L 21685744 21685806 chr2L 21685870 21685932 20 126 8.5 6.0 7.2 2.4 188 chr2L 21685744 intron CG31619 + chr2L 21685838 intron CG31619 + chr2L 21685932 intron CG31619 + chr2L_20_21685001 chr2L_21685001 RAL-223 810 chr2L 21691792 21691827 chr2L 21698312 21698349 Burdock 10 6520 14.0 0.5 7.2 1.2 6557 chr2L 21691792 intron CG31619 + chr2L 21695070 intron CG31619 + chr2L 21698349 intron CG31619 + chr2L_10_21695001 chr2L_21695001 RAL-223 811 chr2L 21750051 21750130 chr2L 21750421 21750503 14 370 6.5 5.5 6.0 2.0 452 chr2L 21750051 intron step - chr2L 21750277 intron step - chr2L 21750503 intron step - chr2L_14_21750001 chr2L_21750001 RAL-223 812 chr2L 21754619 21754687 chr2L 21754750 21754818 21 131 7.0 7.5 7.2 2.6 199 chr2L 21754619 intron step - chr2L 21754718 intron step - chr2L 21754818 intron step - chr2L_21_21750001 chr2L_21750001 RAL-223 813 chr2L 21755448 21755516 chr2L 21755622 21755690 32 174 10.5 7.5 9.0 3.2 242 chr2L 21755448 intron step - chr2L 21755569 intron step - chr2L 21755690 intron step - chr2L_32_21755001 chr2L_21755001 RAL-223 814 chr2L 21836345 21836418 chr2L 21836485 21836558 20 138 14.5 10.5 12.5 1.5 213 chr2L 21836345 3` UTR tsh + chr2L 21836452 3` UTR tsh + chr2L 21836558 3` UTR tsh + chr2L_20_21835001 chr2L_21835001 RAL-223 815 chr2L 21882513 21882586 chr2L 21882661 21882733 19 147 6.5 5.5 6.0 2.7 220 chr2L 21882513 intergenic not near genes chr2L 21882623 intergenic not near genes chr2L 21882733 intergenic not near genes chr2L_19_21880001 chr2L_21880001 RAL-223 816 chr2L 21896379 21896453 chr2L 21896513 21896587 20 133 5.0 5.0 5.0 3.3 208 chr2L 21896379 intergenic CG11629 - chr2L 21896483 intergenic CG11629 - chr2L 21896587 intergenic CG11629 - chr2L_20_21895001 chr2L_21895001 RAL-223 817 chr2L 21933878 21933912 chr2L 21934009 21934043 9 129 14.0 10.5 12.2 0.7 165 chr2L 21933878 intergenic not near genes chr2L 21933960 intergenic not near genes chr2L 21934043 intergenic not near genes chr2L_9_21930001 chr2L_21930001 RAL-223 818 chr2L 21981642 21981703 chr2L 21990857 21990918 roo 27 9215 8.5 7.5 8.0 3.0 9276 chr2L 21981642 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990918 exon CG2528 - chr2L_27_21985001 chr2L_21985001 RAL-223 819 chr2L 22005718 22005769 chr2L 22005858 22005909 25 140 12.5 0.0 6.2 3.5 191 chr2L 22005718 intergenic not near genes chr2L 22005814 intergenic not near genes chr2L 22005909 intergenic not near genes chr2L_25_22005001 chr2L_22005001 RAL-223 820 chr2L 22037334 22037401 chr2L 22037676 22037753 INE-1 19 351 6.0 3.0 4.5 3.5 419 chr2L 22037334 intergenic not near genes chr2L 22037544 intergenic CG41434 + chr2L 22037753 intergenic CG41434 + chr2L_19_22035001 chr2L_22035001 RAL-223 821 chr2L 22047205 22047256 chr2L 22047380 22047431 16 173 6.0 4.0 5.0 2.7 226 chr2L 22047205 intergenic not near genes chr2L 22047318 intergenic not near genes chr2L 22047431 intergenic not near genes chr2L_16_22045001 chr2L_22045001 RAL-223 822 chr2L 22179496 22179571 chr2L 22179619 22179638 29 125 12.0 14.5 13.2 2.0 142 chr2L 22179496 intron CG3635 + chr2L 22179567 intron CG3635 + chr2L 22179638 intron CG3635 + chr2L_29_22175001 chr2L_22175001 RAL-223 823 chr2L 22191981 22192046 chr2L 22192120 22192185 19 139 9.0 10.5 9.8 1.8 204 chr2L 22191981 intron Ir40a - chr2L 22192083 intron Ir40a - chr2L 22192185 intron Ir40a - chr2L_19_22190001 chr2L_22190001 RAL-223 824 chr2L 22212089 22212163 chr2L 22212686 22212760 28 597 1.0 9.5 5.2 4.5 671 chr2L 22212089 intron Ir40a - chr2L 22212424 intron Ir40a - chr2L 22212760 exon Ir40a - chr2L_28_22210001 chr2L_22210001 RAL-223 825 chr2L 22215863 22215931 chr2L 22215999 22216067 32 136 7.5 10.0 8.8 3.3 204 chr2L 22215863 intergenic not near genes chr2L 22215965 intergenic not near genes chr2L 22216067 intergenic not near genes chr2L_32_22215001 chr2L_22215001 RAL-223 826 chr2L 22239379 22239402 chr2L 22239510 22239533 6 131 16.0 8.0 12.0 0.5 154 chr2L 22239379 intron CR43765 - chr2L 22239456 3` UTR CR43765 - chr2L 22239533 3` UTR CR43765 - chr2L_6_22235001 chr2L_22235001 RAL-223 827 chr2L 22239403 22239456 chr2L 22239508 22239587 21 128 6.5 8.0 7.2 2.6 184 chr2L 22239403 intron CR43765 - chr2L 22239495 3` UTR CR43765 - chr2L 22239587 3` UTR CR43765 - chr2L_21_22235001 chr2L_22235001 RAL-223 828 chr2L 22258572 22258608 chr2L 22260746 22260782 G6 11 2173 19.5 10.0 14.8 0.7 2210 chr2L 22258572 intergenic Tif-IA + chr2L 22259677 intergenic not near genes chr2L 22260782 intergenic not near genes chr2L_11_22255001 chr2L_22255001 RAL-223 829 chr2L 22258613 22258641 chr2L 22260787 22260815 G6 11 2174 9.5 15.0 12.2 0.8 2202 chr2L 22258613 intergenic Tif-IA + chr2L 22259714 intergenic not near genes chr2L 22260815 intergenic not near genes chr2L_11_22255001 chr2L_22255001 RAL-223 830 chr2L 22293712 22293783 chr2L 22293845 22293916 21 132 5.0 5.0 5.0 3.5 204 chr2L 22293712 intergenic not near genes chr2L 22293814 intergenic not near genes chr2L 22293916 intergenic not near genes chr2L_21_22290001 chr2L_22290001 RAL-223 831 chr2L 22296872 22296923 chr2L 22297049 22297090 11 176 7.5 9.0 8.2 1.2 218 chr2L 22296872 intergenic not near genes chr2L 22296981 intergenic not near genes chr2L 22297090 intergenic not near genes chr2L_11_22295001 chr2L_22295001 RAL-223 832 chr2L 22314850 22314897 chr2L 22318237 22318284 frogger 13 3387 44.0 57.5 50.8 0.3 3434 chr2L 22314850 intron CG17018 + chr2L 22316567 intron CG17018 + chr2L 22318284 intron CG17018 + chr2L_13_22315001 chr2L_22315001 RAL-223 833 chr2L 22515095 22515157 chr2L 22522595 22522657 HMS-Beagle2 19 7499 8.0 7.0 7.5 2.2 7562 chr2L 22515095 intergenic not near genes chr2L 22518876 intergenic not near genes chr2L 22522657 intergenic not near genes chr2L_19_22515001 chr2L_22515001 RAL-223 834 chr2L 22548891 22548935 chr2L 22550139 22550208 1360 12 1263 0.5 6.5 3.5 2.7 1317 chr2L 22548891 intergenic CG17490 + chr2L 22549550 intergenic not near genes chr2L 22550208 intergenic CG17493 + chr2L_12_22545001 chr2L_22545001 RAL-223 835 chr2L 22558095 22558170 chr2L 22558221 22558296 7 125 8.5 8.0 8.2 0.8 201 chr2L 22558095 intergenic not near genes chr2L 22558196 intergenic not near genes chr2L 22558296 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-223 836 chr2L 22558343 22558355 chr2L 22558704 22558716 7 360 22.0 8.5 15.2 0.4 373 chr2L 22558343 intergenic not near genes chr2L 22558530 intergenic not near genes chr2L 22558716 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-223 837 chr2L 22558358 22558410 chr2L 22558703 22558771 19 360 10.0 8.0 9.0 1.9 413 chr2L 22558358 intergenic not near genes chr2L 22558564 intergenic not near genes chr2L 22558771 intergenic not near genes chr2L_19_22555001 chr2L_22555001 RAL-223 838 chr2L 22581929 22582000 chr2L 22583768 22583840 S-element 21 1839 10.5 4.5 7.5 2.5 1911 chr2L 22581929 intron CG17494 + chr2L 22582884 intron CG17494 + chr2L 22583840 intron CG17494 + chr2L_21_22580001 chr2L_22580001 RAL-223 839 chr2L 22674025 22674049 chr2L 22674152 22674176 9 127 1.0 6.5 3.8 1.9 151 chr2L 22674025 intron CG40006 - chr2L 22674100 intron CG40006 - chr2L 22674176 intron CG40006 - chr2L_9_22670001 chr2L_22670001 RAL-223 840 chr2L 22719393 22719461 chr2L 22727566 22727634 gypsy2 24 8173 5.5 6.5 6.0 3.4 8241 chr2L 22719393 intron CG40006 - chr2L 22723514 intron CG40006 - chr2L 22727634 intron CG40006 - chr2L_24_22720001 chr2L_22720001 RAL-223 841 chr2L 22776379 22776440 chr2L 22778218 22778278 S-element 11 1839 4.5 6.0 5.2 1.8 1899 chr2L 22776379 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778278 intergenic not near genes chr2L_11_22775001 chr2L_22775001 RAL-223 842 chr2L 22983893 22983965 chr2L 22984019 22984091 31 123 8.5 7.0 7.8 3.5 198 chr2L 22983893 intron cta + chr2L 22983992 intron cta + chr2L 22984091 intron cta + chr2L_31_22980001 chr2L_22980001 RAL-223 843 chr2L 23168821 23168883 chr2L 23168935 23168993 8 117 11.5 10.0 10.8 0.7 172 chr2L 23168821 intron CG12567 - chr2L 23168907 intron CG12567 - chr2L 23168993 intron CG12567 - chr2L_8_23165001 chr2L_23165001 RAL-223 844 chr2R 469922 469972 chr2R 473213 473263 F-element 6 3290 5.0 6.0 5.5 0.9 3341 chr2R 469922 intergenic not near genes chr2R 471592 intergenic not near genes chr2R 473263 intergenic not near genes chr2R_6_470001 chr2R_470001 RAL-223 845 chr2R 529319 529337 chr2R 537994 538012 Max-element 4 8675 8.0 9.0 8.5 0.4 8693 chr2R 529319 intron CG40378 + chr2R 533666 intron CG40378 + chr2R 538012 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-223 846 chr2R 548256 548322 chr2R 548386 548452 14 130 8.5 6.0 7.2 1.7 196 chr2R 548256 intron CG40378 + chr2R 548354 intron CG40378 + chr2R 548452 intron CG40378 + chr2R_14_545001 chr2R_545001 RAL-223 847 chr2R 552749 552779 chr2R 553974 554009 1360 12 1254 4.0 4.0 4.0 2.4 1260 chr2R 552749 intron CG40378 + chr2R 553379 intron CG40378 + chr2R 554009 intron CG40378 + chr2R_12_550001 chr2R_550001 RAL-223 848 chr2R 652479 652485 chr2R 652883 652889 5 404 9.0 5.5 7.2 0.6 410 chr2R 652479 intergenic not near genes chr2R 652684 intergenic not near genes chr2R 652889 intergenic not near genes chr2R_5_650001 chr2R_650001 RAL-223 849 chr2R 952412 952455 chr2R 952585 952628 8 171 6.0 6.5 6.2 1.1 216 chr2R 952412 intergenic not near genes chr2R 952520 intergenic not near genes chr2R 952628 intergenic not near genes chr2R_8_950001 chr2R_950001 RAL-223 850 chr2R 1338332 1338338 chr2R 1338463 1338469 4 131 37.0 32.5 34.8 0.1 137 chr2R 1338332 intergenic not near genes chr2R 1338400 intergenic not near genes chr2R 1338469 intergenic not near genes chr2R_4_1335001 chr2R_1335001 RAL-223 851 chr2R 1365821 1365890 chr2R 1365983 1366032 18 161 4.0 7.0 5.5 2.8 211 chr2R 1365821 intron l(2)41Ab + chr2R 1365926 intron l(2)41Ab + chr2R 1366032 intron l(2)41Ab + chr2R_18_1365001 chr2R_1365001 RAL-223 852 chr2R 1516559 1516602 chr2R 1521337 1521380 1731 22 4778 19.5 18.5 19.0 1.1 4821 chr2R 1516559 exon Maf1 - chr2R 1518970 intron Maf1 - chr2R 1521380 5` UTR Maf1 - chr2R_22_1515001 chr2R_1515001 RAL-223 853 chr2R 1755903 1755970 chr2R 1756067 1756092 15 161 4.5 2.5 3.5 3.3 189 chr2R 1755903 intron CG41520 + chr2R 1755998 intron CG41520 + chr2R 1756092 intron CG41520 + chr2R_15_1755001 chr2R_1755001 RAL-223 854 chr2R 1923557 1923575 chr2R 1925996 1925998 4 2441 2.0 9.5 5.8 0.6 2441 chr2R 1923557 intron CG17684 - chr2R 1924778 intron CG17684 - chr2R 1925998 intron CG17684 - chr2R_4_1920001 chr2R_1920001 RAL-223 855 chr2R 2015088 2015155 chr2R 2015215 2015282 25 127 4.0 5.5 4.8 4.3 194 chr2R 2015088 intron CG17684 - chr2R 2015185 intron CG17684 - chr2R 2015282 intron CG17684 - chr2R_25_2015001 chr2R_2015001 RAL-223 856 chr2R 2044655 2044667 chr2R 2045502 2045514 5 847 7.5 6.5 7.0 0.6 859 chr2R 2044655 intron CG17684 - chr2R 2045084 intron CG17684 - chr2R 2045514 intron CG17684 - chr2R_5_2045001 chr2R_2045001 RAL-223 857 chr2R 2110461 2110502 chr2R 2118069 2118110 17.6 13 7608 15.0 5.0 10.0 1.2 7649 chr2R 2110461 intron CG17684 - chr2R 2114286 intron CG17684 - chr2R 2118110 intron CG17684 - chr2R_13_2110001 chr2R_2110001 RAL-223 858 chr2R 2498945 2499018 chr2R 2508142 2508166 roo 25 9194 5.0 2.5 3.8 5.2 9221 chr2R 2498945 intron MFS17 - chr2R 2503556 intron MFS17 - chr2R 2508166 intron MFS17 - chr2R_25_2500001 chr2R_2500001 RAL-223 859 chr2R 2508261 2508320 chr2R 2508449 2508483 21 186 8.0 8.5 8.2 2.3 222 chr2R 2508261 intron MFS17 - chr2R 2508372 intron MFS17 - chr2R 2508483 intron MFS17 - chr2R_21_2505001 chr2R_2505001 RAL-223 860 chr2R 2590046 2590053 chr2R 2590856 2590864 copia 4 811 31.0 36.5 33.8 0.1 818 chr2R 2590046 intergenic not near genes chr2R 2590455 intergenic not near genes chr2R 2590864 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-223 861 chr2R 2591488 2591505 chr2R 2594214 2594231 roo 12 2724 51.5 30.0 40.8 0.3 2743 chr2R 2591488 intergenic not near genes chr2R 2592860 intergenic not near genes chr2R 2594231 intergenic not near genes chr2R_12_2590001 chr2R_2590001 RAL-223 862 chr2R 2875365 2875391 chr2R 2878930 2878956 HMS-Beagle 8 3565 33.0 13.5 23.2 0.3 3591 chr2R 2875365 intergenic not near genes chr2R 2877160 intergenic not near genes chr2R 2878956 intergenic not near genes chr2R_8_2875001 chr2R_2875001 RAL-223 863 chr2R 3089351 3089373 chr2R 3089479 3089503 4 132 5.5 5.5 5.5 0.6 152 chr2R 3089351 intron CG42596 + chr2R 3089427 intron CG42596 + chr2R 3089503 intron CG42596 + chr2R_4_3085001 chr2R_3085001 RAL-223 864 chr2R 3107702 3107746 chr2R 3108436 3108480 4 734 4.0 6.5 5.2 0.6 778 chr2R 3107702 intron CG42596 + chr2R 3108091 intron CG42596 + chr2R 3108480 intron CG42596 + chr2R_4_3105001 chr2R_3105001 RAL-223 865 chr2R 3144055 3144101 chr2R 3393383 3393429 Doc 11 249327 35.0 7.5 21.2 0.5 249374 chr2R 3144055 intron CG42596 + chr2R 3268742 intergenic not near genes chr2R 3393429 intergenic not near genes chr2R_11_3265001 chr2R_3265001 RAL-223 866 chr2R 3203508 3203512 chr2R 3203643 3203647 6 135 20.5 21.5 21.0 0.3 139 chr2R 3203508 intergenic not near genes chr2R 3203578 intergenic not near genes chr2R 3203647 intergenic not near genes chr2R_6_3200001 chr2R_3200001 RAL-223 867 chr2R 3293717 3293773 chr2R 3293845 3293901 5 128 5.0 2.0 3.5 1.1 184 chr2R 3293717 intergenic not near genes chr2R 3293809 intergenic not near genes chr2R 3293901 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-223 868 chr2R 3515235 3515305 chr2R 3515373 3515443 12 138 22.5 26.0 24.2 0.5 208 chr2R 3515235 intergenic not near genes chr2R 3515339 intergenic not near genes chr2R 3515443 intergenic not near genes chr2R_12_3515001 chr2R_3515001 RAL-223 869 chr2R 3532573 3532616 chr2R 3536066 3536109 Doc 7 3493 4.0 5.5 4.8 1.2 3536 chr2R 3532573 intergenic not near genes chr2R 3534341 intergenic not near genes chr2R 3536109 intergenic not near genes chr2R_7_3530001 chr2R_3530001 RAL-223 870 chr2R 3702631 3702643 chr2R 3702776 3702787 6 143 21.0 15.5 18.2 0.3 156 chr2R 3702631 intergenic not near genes chr2R 3702709 intergenic not near genes chr2R 3702787 intergenic not near genes chr2R_6_3700001 chr2R_3700001 RAL-223 871 chr2R 3702644 3702657 chr2R 3702774 3702779 4 133 18.0 14.0 16.0 0.2 135 chr2R 3702644 intergenic not near genes chr2R 3702712 intergenic not near genes chr2R 3702779 intergenic not near genes chr2R_4_3700001 chr2R_3700001 RAL-223 872 chr2R 3704376 3704392 chr2R 3704507 3704521 7 131 51.5 24.0 37.8 0.2 145 chr2R 3704376 intergenic not near genes chr2R 3704448 intergenic not near genes chr2R 3704521 intergenic not near genes chr2R_7_3700001 chr2R_3700001 RAL-223 873 chr2R 4018088 4018118 chr2R 4018245 4018275 5 157 7.0 0.5 3.8 1.0 187 chr2R 4018088 intron Haspin + chr2R 4018182 intron Haspin + chr2R 4018275 intron Haspin + chr2R_5_4015001 chr2R_4015001 RAL-223 874 chr2R 4312914 4312984 chr2R 4313048 4313078 33 133 6.0 13.5 9.8 3.1 164 chr2R 4312914 intergenic not near genes chr2R 4312996 intergenic not near genes chr2R 4313078 intergenic not near genes chr2R_33_4310001 chr2R_4310001 RAL-223 875 chr2R 4621270 4621341 chr2R 4621860 4621931 27 590 7.0 7.5 7.2 3.3 661 chr2R 4621270 3` UTR CR44101 - chr2R 4621600 3` UTR CR44101 - chr2R 4621931 3` UTR CR44101 - chr2R_27_4620001 chr2R_4620001 RAL-223 876 chr2R 4622914 4622977 chr2R 4624123 4624186 1360 27 1208 9.5 8.0 8.8 2.8 1272 chr2R 4622914 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624186 intergenic not near genes chr2R_27_4620001 chr2R_4620001 RAL-223 877 chr2R 4731907 4731942 chr2R 4732040 4732075 11 133 15.0 10.0 12.5 0.8 168 chr2R 4731907 intergenic not near genes chr2R 4731991 intergenic not near genes chr2R 4732075 intergenic not near genes chr2R_11_4730001 chr2R_4730001 RAL-223 878 chr2R 5075182 5075193 chr2R 5075360 5075371 7 177 20.0 0.0 10.0 0.6 189 chr2R 5075182 intergenic not near genes chr2R 5075276 intergenic not near genes chr2R 5075371 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-223 879 chr2R 5075215 5075365 chr2R 5075756 5075831 29 522 0.0 6.0 3.0 7.2 616 chr2R 5075215 intergenic not near genes chr2R 5075523 intergenic not near genes chr2R 5075831 intergenic not near genes chr2R_29_5075001 chr2R_5075001 RAL-223 880 chr2R 5080758 5080814 chr2R 5080894 5080955 18 138 5.0 15.0 10.0 1.6 197 chr2R 5080758 intergenic not near genes chr2R 5080856 intergenic not near genes chr2R 5080955 intergenic not near genes chr2R_18_5080001 chr2R_5080001 RAL-223 881 chr2R 5082139 5082186 chr2R 5086767 5086840 37 4632 47.5 59.5 53.5 0.7 4701 chr2R 5082139 intergenic not near genes chr2R 5084490 intergenic not near genes chr2R 5086840 intergenic not near genes chr2R_37_5080001 chr2R_5080001 RAL-223 882 chr2R 5301880 5301900 chr2R 5302075 5302094 11 194 44.0 44.5 44.2 0.2 214 chr2R 5301880 intergenic not near genes chr2R 5301987 intergenic not near genes chr2R 5302094 intergenic not near genes chr2R_11_5300001 chr2R_5300001 RAL-223 883 chr2R 5303439 5303521 chr2R 5303577 5303659 57 138 13.0 17.5 15.2 3.5 220 chr2R 5303439 intergenic not near genes chr2R 5303549 intergenic not near genes chr2R 5303659 intergenic not near genes chr2R_57_5300001 chr2R_5300001 RAL-223 884 chr2R 5342780 5342852 chr2R 5342927 5342998 19 147 4.5 7.0 5.8 2.8 218 chr2R 5342780 intergenic not near genes chr2R 5342889 intergenic not near genes chr2R 5342998 intergenic not near genes chr2R_19_5340001 chr2R_5340001 RAL-223 885 chr2R 5417953 5418021 chr2R 5420630 5420703 Burdock 32 2681 6.5 10.0 8.2 3.5 2750 chr2R 5417953 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420703 intron laccase2 + chr2R_32_5415001 chr2R_5415001 RAL-223 886 chr2R 5472326 5472380 chr2R 5472463 5472525 19 143 8.0 8.5 8.2 2.1 199 chr2R 5472326 intron CG30440 - chr2R 5472426 intron CG30440 - chr2R 5472525 intron CG30440 - chr2R_19_5470001 chr2R_5470001 RAL-223 887 chr2R 5476302 5476381 chr2R 5476896 5476975 26 594 6.5 6.5 6.5 3.5 673 chr2R 5476302 intron CG30440 - chr2R 5476638 intron CG30440 - chr2R 5476975 intron CG30440 - chr2R_26_5475001 chr2R_5475001 RAL-223 888 chr2R 5477269 5477343 chr2R 5477448 5477521 24 178 6.0 5.0 5.5 3.7 252 chr2R 5477269 intron CG30440 - chr2R 5477395 intron CG30440 - chr2R 5477521 intron CG30440 - chr2R_24_5475001 chr2R_5475001 RAL-223 889 chr2R 5484849 5484886 chr2R 5484985 5485023 16 137 0.0 15.0 7.5 1.9 174 chr2R 5484849 intron CG30440 - chr2R 5484936 intron CG30440 - chr2R 5485023 intron CG30440 - chr2R_16_5480001 chr2R_5480001 RAL-223 890 chr2R 5509506 5509549 chr2R 5509652 5509695 22 145 3.5 16.5 10.0 2.0 189 chr2R 5509506 intron CG30438 + chr2R 5509600 intron CG30438 + chr2R 5509695 intron CG30438 + chr2R_22_5505001 chr2R_5505001 RAL-223 891 chr2R 5543198 5543212 chr2R 5547320 5547346 invader1 5 4132 0.0 7.0 3.5 1.1 4148 chr2R 5543198 intron CG30438 + chr2R 5545272 intron CG30438 + chr2R 5547346 intron CG30438 + chr2R_5_5545001 chr2R_5545001 RAL-223 892 chr2R 5611757 5611770 chr2R 5611906 5611919 7 151 16.0 5.5 10.8 0.6 162 chr2R 5611757 intergenic CG17508 + chr2R 5611838 intergenic CG17508 + chr2R 5611919 intergenic CG17508 + chr2R_7_5610001 chr2R_5610001 RAL-223 893 chr2R 5611774 5611826 chr2R 5611905 5611960 12 145 6.5 5.5 6.0 1.7 186 chr2R 5611774 intergenic CG17508 + chr2R 5611867 intergenic CG17508 + chr2R 5611960 intergenic CG17508 + chr2R_12_5610001 chr2R_5610001 RAL-223 894 chr2R 5581559 5581572 chr2R 5627640 5627653 8 46081 24.5 49.0 36.8 0.2 46094 chr2R 5581559 intergenic not near genes chr2R 5604606 exon Fis1 - chr2R 5627653 intergenic not near genes chr2R_8_5600001 chr2R_5600001 RAL-223 895 chr2R 5664239 5664255 chr2R 5664369 5664385 11 129 22.5 9.0 15.8 0.7 146 chr2R 5664239 5` UTR CR45472 + chr2R 5664312 intron CR45472 + chr2R 5664385 intron CR45472 + chr2R_11_5660001 chr2R_5660001 RAL-223 896 chr2R 5664260 5664311 chr2R 5664364 5664441 19 128 11.0 10.0 10.5 1.7 181 chr2R 5664260 5` UTR CR45472 + chr2R 5664350 intron CR45472 + chr2R 5664441 intron CR45472 + chr2R_19_5660001 chr2R_5660001 RAL-223 897 chr2R 5678279 5678325 chr2R 5678702 5678728 14 426 8.5 4.5 6.5 1.9 449 chr2R 5678279 intron scaf - chr2R 5678504 intron scaf - chr2R 5678728 intron scaf - chr2R_14_5675001 chr2R_5675001 RAL-223 898 chr2R 5750082 5750145 chr2R 5750542 5750605 24 460 7.5 9.5 8.5 2.5 523 chr2R 5750082 intergenic not near genes chr2R 5750344 intergenic not near genes chr2R 5750605 intergenic not near genes chr2R_24_5750001 chr2R_5750001 RAL-223 899 chr2R 5772469 5772729 chr2R 5772598 5772892 52 144 12.0 9.0 10.5 4.5 423 chr2R 5772469 3` UTR Gp210 + chr2R 5772680 3` UTR Gp210 + chr2R 5772892 3` UTR Gp210 + chr2R_52_5770001 chr2R_5770001 RAL-223 900 chr2R 5838827 5838900 chr2R 5838963 5839036 26 136 8.5 6.5 7.5 3.1 209 chr2R 5838827 intron dpr12 + chr2R 5838932 intron dpr12 + chr2R 5839036 intron dpr12 + chr2R_26_5835001 chr2R_5835001 RAL-223 901 chr2R 5847650 5847695 chr2R 5847755 5847798 9 113 10.0 9.0 9.5 0.9 148 chr2R 5847650 intron dpr12 + chr2R 5847724 intron dpr12 + chr2R 5847798 intron dpr12 + chr2R_9_5845001 chr2R_5845001 RAL-223 902 chr2R 5857606 5857664 chr2R 5857888 5857946 19 282 6.0 8.5 7.2 2.3 340 chr2R 5857606 intron dpr12 + chr2R 5857776 intron dpr12 + chr2R 5857946 intron dpr12 + chr2R_19_5855001 chr2R_5855001 RAL-223 903 chr2R 5861250 5861260 chr2R 5861421 5861431 4 170 13.5 6.5 10.0 0.4 181 chr2R 5861250 intergenic dpr12 + chr2R 5861340 intergenic not near genes chr2R 5861431 intergenic not near genes chr2R_4_5860001 chr2R_5860001 RAL-223 904 chr2R 5861268 5861315 chr2R 5861419 5861486 17 166 5.5 6.5 6.0 2.4 218 chr2R 5861268 intergenic dpr12 + chr2R 5861377 intergenic not near genes chr2R 5861486 intergenic not near genes chr2R_17_5860001 chr2R_5860001 RAL-223 905 chr2R 5869233 5869299 chr2R 5874359 5874425 flea 36 5126 11.0 5.0 8.0 4.0 5192 chr2R 5869233 intergenic not near genes chr2R 5871829 intergenic not near genes chr2R 5874425 intergenic not near genes chr2R_36_5870001 chr2R_5870001 RAL-223 906 chr2R 5878301 5878341 chr2R 5878442 5878482 11 141 11.5 7.0 9.2 1.1 181 chr2R 5878301 intergenic not near genes chr2R 5878392 intergenic not near genes chr2R 5878482 intergenic not near genes chr2R_11_5875001 chr2R_5875001 RAL-223 907 chr2R 5878883 5878955 chr2R 5879007 5879085 36 129 7.5 5.0 6.2 5.0 202 chr2R 5878883 intergenic CG44438 - chr2R 5878984 intergenic CG44438 - chr2R 5879085 intergenic CG44438 - chr2R_36_5875001 chr2R_5875001 RAL-223 908 chr2R 5885316 5885375 chr2R 5885495 5885554 22 178 6.5 6.0 6.2 3.1 238 chr2R 5885316 5` UTR CR44125 + chr2R 5885435 5` UTR CR44125 + chr2R 5885554 5` UTR CR44125 + chr2R_22_5885001 chr2R_5885001 RAL-223 909 chr2R 5902120 5902185 chr2R 5909729 5909794 17.6 13 7609 7.5 8.0 7.8 1.5 7674 chr2R 5902120 5` UTR CG43366 + chr2R 5905957 intron CG43366 + chr2R 5909794 intron CG43366 + chr2R_13_5905001 chr2R_5905001 RAL-223 910 chr2R 5914126 5914158 chr2R 5914425 5914499 13 320 5.5 6.0 5.8 1.9 373 chr2R 5914126 intron CG43366 + chr2R 5914312 intron CG43366 + chr2R 5914499 intron CG43366 + chr2R_13_5910001 chr2R_5910001 RAL-223 911 chr2R 5947020 5947080 chr2R 5947191 5947251 20 171 6.5 4.0 5.2 3.2 231 chr2R 5947020 intergenic not near genes chr2R 5947136 intergenic not near genes chr2R 5947251 intergenic not near genes chr2R_20_5945001 chr2R_5945001 RAL-223 912 chr2R 5985589 5985660 chr2R 5985795 5985866 30 204 10.5 6.0 8.2 3.3 277 chr2R 5985589 intron Src42A + chr2R 5985728 intron Src42A + chr2R 5985866 intron Src42A + chr2R_30_5985001 chr2R_5985001 RAL-223 913 chr2R 6033400 6033470 chr2R 6033535 6033605 39 134 8.5 9.0 8.8 4.0 205 chr2R 6033400 intron SCAP - chr2R 6033502 intron SCAP - chr2R 6033605 intron SCAP - chr2R_39_6030001 chr2R_6030001 RAL-223 914 chr2R 6053008 6053075 chr2R 6053145 6053212 24 136 9.0 8.0 8.5 2.5 204 chr2R 6053008 intron CCHa2-R + chr2R 6053110 intron CCHa2-R + chr2R 6053212 intron CCHa2-R + chr2R_24_6050001 chr2R_6050001 RAL-223 915 chr2R 6081382 6081447 chr2R 6081553 6081618 36 171 8.5 16.5 12.5 2.7 236 chr2R 6081382 intron Ars2 - chr2R 6081500 intron Ars2 - chr2R 6081618 intron Ars2 - chr2R_36_6080001 chr2R_6080001 RAL-223 916 chr2R 6096684 6096749 chr2R 6101921 6101994 BS 33 5243 12.0 9.0 10.5 2.9 5310 chr2R 6096684 intron EcR - chr2R 6099339 intron EcR - chr2R 6101994 intron EcR - chr2R_33_6095001 chr2R_6095001 RAL-223 917 chr2R 6129285 6129288 chr2R 6129413 6129416 6 128 19.5 11.5 15.5 0.4 131 chr2R 6129285 intron EcR - chr2R 6129350 intron EcR - chr2R 6129416 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-223 918 chr2R 6129290 6129352 chr2R 6129408 6129480 30 128 8.5 9.5 9.0 3.0 190 chr2R 6129290 intron EcR - chr2R 6129385 intron EcR - chr2R 6129480 intron EcR - chr2R_30_6125001 chr2R_6125001 RAL-223 919 chr2R 6136723 6136804 chr2R 6136869 6136949 28 145 7.0 6.5 6.8 3.6 226 chr2R 6136723 intron EcR - chr2R 6136836 intron EcR - chr2R 6136949 intron EcR - chr2R_28_6135001 chr2R_6135001 RAL-223 920 chr2R 6151469 6151525 chr2R 6151595 6151619 16 124 10.5 7.0 8.8 1.6 150 chr2R 6151469 intron EcR - chr2R 6151544 intron EcR - chr2R 6151619 intron EcR - chr2R_16_6150001 chr2R_6150001 RAL-223 921 chr2R 6178076 6178145 chr2R 6178252 6178321 25 176 4.5 7.0 5.8 3.7 245 chr2R 6178076 intergenic not near genes chr2R 6178198 intergenic not near genes chr2R 6178321 intergenic not near genes chr2R_25_6175001 chr2R_6175001 RAL-223 922 chr2R 6194643 6194687 chr2R 6194776 6194820 18 132 13.0 9.5 11.2 1.5 177 chr2R 6194643 intron Ptr - chr2R 6194732 intron Ptr - chr2R 6194820 intron Ptr - chr2R_18_6190001 chr2R_6190001 RAL-223 923 chr2R 6494485 6494548 chr2R 6499297 6499360 F-element 16 4812 4.5 3.0 3.8 3.3 4875 chr2R 6494485 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499360 intergenic not near genes chr2R_16_6495001 chr2R_6495001 RAL-223 924 chr2R 6502207 6502285 chr2R 6502570 6502649 40 363 6.0 8.0 7.0 5.0 442 chr2R 6502207 5` UTR jing + chr2R 6502428 5` UTR jing + chr2R 6502649 5` UTR jing + chr2R_40_6500001 chr2R_6500001 RAL-223 925 chr2R 6539774 6539853 chr2R 6539947 6540018 22 165 7.5 8.0 7.8 2.5 244 chr2R 6539774 intron jing + chr2R 6539896 intron jing + chr2R 6540018 intron jing + chr2R_22_6535001 chr2R_6535001 RAL-223 926 chr2R 6546674 6546742 chr2R 6546825 6546892 30 151 8.5 0.0 4.2 5.8 218 chr2R 6546674 intron jing + chr2R 6546783 intron jing + chr2R 6546892 intron jing + chr2R_30_6545001 chr2R_6545001 RAL-223 927 chr2R 6579736 6579797 chr2R 6584872 6584933 flea 20 5136 5.5 10.5 8.0 2.2 5197 chr2R 6579736 intron jing + chr2R 6582334 intron jing + chr2R 6584933 intron jing + chr2R_20_6580001 chr2R_6580001 RAL-223 928 chr2R 6595318 6595383 chr2R 6595451 6595494 14 131 5.5 7.5 6.5 1.9 176 chr2R 6595318 intron jing + chr2R 6595406 intron jing + chr2R 6595494 intron jing + chr2R_14_6595001 chr2R_6595001 RAL-223 929 chr2R 6624387 6624437 chr2R 6624521 6624571 26 134 16.5 6.5 11.5 2.1 184 chr2R 6624387 exon CG33919 - chr2R 6624479 intron CG33919 - chr2R 6624571 exon CG33919 - chr2R_26_6620001 chr2R_6620001 RAL-223 930 chr2R 6624441 6624454 chr2R 6624520 6624588 7 124 14.5 6.5 10.5 0.6 147 chr2R 6624441 exon CG33919 - chr2R 6624514 intron CG33919 - chr2R 6624588 intergenic CG33919 - chr2R_7_6620001 chr2R_6620001 RAL-223 931 chr2R 6699560 6699623 chr2R 6699695 6699757 14 135 5.0 7.5 6.2 1.9 197 chr2R 6699560 intergenic Rab2 + chr2R 6699658 intergenic Rab2 + chr2R 6699757 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_14_6695001 chr2R_6695001 RAL-223 932 chr2R 6741445 6741527 chr2R 6741573 6741655 22 123 9.5 9.5 9.5 2.1 210 chr2R 6741445 intergenic phtf + chr2R 6741550 intergenic phtf + chr2R 6741655 intergenic phtf + chr2R_22_6740001 chr2R_6740001 RAL-223 933 chr2R 6786410 6786421 chr2R 6786614 6786625 4 204 4.5 18.5 11.5 0.3 215 chr2R 6786410 intron Epac - chr2R 6786518 intron Epac - chr2R 6786625 intron Epac - chr2R_4_6785001 chr2R_6785001 RAL-223 934 chr2R 6786891 6786896 chr2R 6787094 6787099 9 203 19.5 11.0 15.2 0.6 208 chr2R 6786891 intron Epac - chr2R 6786995 intron Epac - chr2R 6787099 intron Epac - chr2R_9_6785001 chr2R_6785001 RAL-223 935 chr2R 6786897 6786959 chr2R 6787090 6787162 25 202 6.5 9.5 8.0 2.8 265 chr2R 6786897 intron Epac - chr2R 6787030 intron Epac - chr2R 6787162 intron Epac - chr2R_25_6785001 chr2R_6785001 RAL-223 936 chr2R 6825623 6825687 chr2R 6825839 6825884 17 201 66.5 57.0 61.8 0.3 261 chr2R 6825623 intergenic not near genes chr2R 6825754 intergenic not near genes chr2R 6825884 intergenic not near genes chr2R_17_6825001 chr2R_6825001 RAL-223 937 chr2R 6843837 6843891 chr2R 6843966 6844020 24 128 6.5 13.0 9.8 2.2 183 chr2R 6843837 intergenic not near genes chr2R 6843928 intergenic not near genes chr2R 6844020 intergenic not near genes chr2R_24_6840001 chr2R_6840001 RAL-223 938 chr2R 6897766 6897777 chr2R 6897942 6897958 5 176 9.5 22.0 15.8 0.3 192 chr2R 6897766 intron CG30158 + chr2R 6897862 intron CG30158 + chr2R 6897958 intron CG30158 + chr2R_5_6895001 chr2R_6895001 RAL-223 939 chr2R 6948037 6948099 chr2R 6948163 6948183 24 124 6.5 7.0 6.8 3.1 146 chr2R 6948037 intron,intron mim -,CheB42c - chr2R 6948110 intron,intron mim -,CheB42c - chr2R 6948183 intron,intron mim -,CheB42c - chr2R_24_6945001 chr2R_6945001 RAL-223 940 chr2R 6952117 6952182 chr2R 6959748 6959812 opus 20 7630 11.0 5.0 8.0 2.2 7695 chr2R 6952117 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955964 intron,intron mim -,CheB42c - chr2R 6959812 intron,intron mim -,CheB42c - chr2R_20_6955001 chr2R_6955001 RAL-223 941 chr2R 7097872 7097919 chr2R 7098004 7098050 11 132 4.5 9.0 6.8 1.4 178 chr2R 7097872 intron esn + chr2R 7097961 intron esn + chr2R 7098050 intron esn + chr2R_11_7095001 chr2R_7095001 RAL-223 942 chr2R 7128594 7128604 chr2R 7130160 7130171 6 1567 8.0 20.0 14.0 0.4 1577 chr2R 7128594 exon Cyp9b1 - chr2R 7129382 exon Cyp9b1 - chr2R 7130171 intergenic Cyp9b2 -,Cyp9b1 - chr2R_6_7125001 chr2R_7125001 RAL-223 943 chr2R 7196532 7196585 chr2R 7201357 7201410 F-element 17 4825 14.5 12.0 13.2 1.2 4878 chr2R 7196532 intron pk + chr2R 7198971 intron pk + chr2R 7201410 intron pk + chr2R_17_7195001 chr2R_7195001 RAL-223 944 chr2R 7209844 7209874 chr2R 7217654 7217685 roo 12 7811 7.0 13.5 10.2 1.1 7841 chr2R 7209844 intron pk + chr2R 7213764 intron pk + chr2R 7217685 intron pk + chr2R_12_7210001 chr2R_7210001 RAL-223 945 chr2R 7235777 7235839 chr2R 7240913 7240974 jockey 41 5138 17.5 9.5 13.5 2.8 5197 chr2R 7235777 intergenic not near genes chr2R 7238376 intergenic not near genes chr2R 7240974 intergenic not near genes chr2R_41_7235001 chr2R_7235001 RAL-223 946 chr2R 7235241 7235317 chr2R 7247674 7247750 23 12434 50.5 132.5 91.5 0.2 12509 chr2R 7235241 intergenic Or43a - chr2R 7241496 intergenic not near genes chr2R 7247750 intergenic not near genes chr2R_23_7240001 chr2R_7240001 RAL-223 947 chr2R 7241271 7241308 chr2R 7249787 7249831 13 8511 58.5 59.5 59.0 0.2 8560 chr2R 7241271 intergenic not near genes chr2R 7245551 5` UTR Ady43A - chr2R 7249831 exon Gadd45 + chr2R_13_7245001 chr2R_7245001 RAL-223 948 chr2R 7244871 7244945 chr2R 7250971 7251045 25 6100 112.5 75.0 93.8 0.3 6174 chr2R 7244871 intron Ady43A - chr2R 7247958 intergenic not near genes chr2R 7251045 intergenic Gadd45 + chr2R_25_7245001 chr2R_7245001 RAL-223 949 chr2R 7262148 7262209 chr2R 7269259 7269318 297 19 7107 8.0 10.0 9.0 1.9 7170 chr2R 7262148 intergenic not near genes chr2R 7265733 intergenic not near genes chr2R 7269318 intergenic not near genes chr2R_19_7265001 chr2R_7265001 RAL-223 950 chr2R 7328080 7328151 chr2R 7328241 7328312 34 161 2.5 13.5 8.0 3.8 232 chr2R 7328080 intron,intron Dscam1 -,CR45129 + chr2R 7328196 intron,intron Dscam1 -,CR45129 + chr2R 7328312 intron,intron Dscam1 -,CR45129 + chr2R_34_7325001 chr2R_7325001 RAL-223 951 chr2R 7378923 7378977 chr2R 7379073 7379127 17 150 6.0 5.0 5.5 2.6 204 chr2R 7378923 intron Dscam1 - chr2R 7379025 intron Dscam1 - chr2R 7379127 intron Dscam1 - chr2R_17_7375001 chr2R_7375001 RAL-223 952 chr2R 7405728 7405737 chr2R 7410187 7410263 32 4461 51.5 67.5 59.5 0.5 4535 chr2R 7405728 intron Eaf - chr2R 7407996 intergenic Eaf -,CG1701 - chr2R 7410263 intergenic not near genes chr2R_32_7405001 chr2R_7405001 RAL-223 953 chr2R 7417853 7418149 chr2R 7417989 7418278 45 132 14.0 9.0 11.5 3.6 425 chr2R 7417853 intergenic not near genes chr2R 7418066 intergenic not near genes chr2R 7418278 intergenic not near genes chr2R_45_7415001 chr2R_7415001 RAL-223 954 chr2R 7418158 7418162 chr2R 7418287 7418291 5 129 9.5 20.0 14.8 0.3 133 chr2R 7418158 intergenic not near genes chr2R 7418224 intergenic not near genes chr2R 7418291 intergenic not near genes chr2R_5_7415001 chr2R_7415001 RAL-223 955 chr2R 7418163 7418164 chr2R 7418283 7418293 5 127 8.5 18.0 13.2 0.4 130 chr2R 7418163 intergenic not near genes chr2R 7418228 intergenic not near genes chr2R 7418293 intergenic not near genes chr2R_5_7415001 chr2R_7415001 RAL-223 956 chr2R 7434856 7434907 chr2R 7439207 7439258 Juan 11 4351 9.5 11.0 10.2 1.0 4402 chr2R 7434856 3` UTR so + chr2R 7437057 intergenic not near genes chr2R 7439258 intergenic not near genes chr2R_11_7435001 chr2R_7435001 RAL-223 957 chr2R 7459236 7459253 chr2R 7459374 7459390 8 138 15.5 5.0 10.2 0.7 154 chr2R 7459236 intergenic Inos -,CG11141 - chr2R 7459313 intergenic CG11141 -,Inos - chr2R 7459390 intergenic CG11141 - chr2R_8_7455001 chr2R_7455001 RAL-223 958 chr2R 7608360 7608425 chr2R 7613613 7613676 I-element 11 5252 5.5 0.0 2.8 2.9 5316 chr2R 7608360 intron CG1358 - chr2R 7611018 intron CG1358 - chr2R 7613676 intron CG1358 - chr2R_11_7610001 chr2R_7610001 RAL-223 959 chr2R 7623763 7623837 chr2R 7624000 7624074 31 236 10.5 8.5 9.5 3.0 311 chr2R 7623763 intron CG43340 + chr2R 7623918 intron CG43340 + chr2R 7624074 intron CG43340 + chr2R_31_7620001 chr2R_7620001 RAL-223 960 chr2R 7714034 7714112 chr2R 7714160 7714245 37 129 7.5 6.0 6.8 4.7 211 chr2R 7714034 exon CG1942 + chr2R 7714140 3` UTR CG1942 + chr2R 7714245 intergenic CG1942 + chr2R_37_7710001 chr2R_7710001 RAL-223 961 chr2R 7734514 7734533 chr2R 7734643 7734662 8 127 16.0 10.5 13.2 0.6 148 chr2R 7734514 intron CG18812 - chr2R 7734588 intron CG18812 - chr2R 7734662 intron CG18812 - chr2R_8_7730001 chr2R_7730001 RAL-223 962 chr2R 7734536 7734561 chr2R 7734642 7734690 12 125 9.5 10.0 9.8 1.1 154 chr2R 7734536 intron CG18812 - chr2R 7734613 intron CG18812 - chr2R 7734690 intron CG18812 - chr2R_12_7730001 chr2R_7730001 RAL-223 963 chr2R 7734568 7734592 chr2R 7734639 7734665 4 100 9.5 10.5 10.0 0.4 97 chr2R 7734568 intron CG18812 - chr2R 7734616 intron CG18812 - chr2R 7734665 intron CG18812 - chr2R_4_7730001 chr2R_7730001 RAL-223 964 chr2R 7737864 7737905 chr2R 7737993 7738034 21 129 15.5 12.0 13.8 1.4 170 chr2R 7737864 intergenic not near genes chr2R 7737949 intergenic not near genes chr2R 7738034 intergenic not near genes chr2R_21_7735001 chr2R_7735001 RAL-223 965 chr2R 7815628 7815695 chr2R 7822147 7822214 Burdock 27 6518 6.0 12.5 9.2 2.6 6586 chr2R 7815628 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822214 3` UTR cathD - chr2R_27_7815001 chr2R_7815001 RAL-223 966 chr2R 7841668 7841746 chr2R 7841800 7841878 32 127 9.5 8.5 9.0 3.2 210 chr2R 7841668 intron Dgk - chr2R 7841773 intron Dgk - chr2R 7841878 intron Dgk - chr2R_32_7840001 chr2R_7840001 RAL-223 967 chr2R 7861904 7861949 chr2R 7862151 7862196 17 247 12.5 5.5 9.0 1.7 292 chr2R 7861904 intron Dgk - chr2R 7862050 intron Dgk - chr2R 7862196 intron Dgk - chr2R_17_7860001 chr2R_7860001 RAL-223 968 chr2R 7862187 7862250 chr2R 7867346 7867413 flea 24 5163 5.0 5.5 5.2 3.9 5226 chr2R 7862187 intron Dgk - chr2R 7864800 intron Dgk - chr2R 7867413 intron Dgk - chr2R_24_7860001 chr2R_7860001 RAL-223 969 chr2R 7869150 7869198 chr2R 7873985 7874034 Doc 17 4835 12.5 11.0 11.8 1.3 4884 chr2R 7869150 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7874034 intron Dgk - chr2R_17_7870001 chr2R_7870001 RAL-223 970 chr2R 7915668 7915744 chr2R 7915810 7915886 35 142 6.5 12.0 9.2 3.4 218 chr2R 7915668 intron CG12159 - chr2R 7915777 intron CG12159 - chr2R 7915886 intron CG12159 - chr2R_35_7915001 chr2R_7915001 RAL-223 971 chr2R 8003039 8003054 chr2R 8003186 8003201 10 147 10.5 18.0 14.2 0.7 162 chr2R 8003039 intergenic not near genes chr2R 8003120 intergenic not near genes chr2R 8003201 intergenic not near genes chr2R_10_8000001 chr2R_8000001 RAL-223 972 chr2R 8014091 8014145 chr2R 8014217 8014271 8 124 4.5 8.5 6.5 1.1 180 chr2R 8014091 intergenic CG14762 - chr2R 8014181 intergenic CG14762 - chr2R 8014271 intergenic not near genes chr2R_8_8010001 chr2R_8010001 RAL-223 973 chr2R 8015605 8015674 chr2R 8017671 8017747 24 2069 5.0 7.5 6.2 3.3 2142 chr2R 8015605 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017747 intergenic not near genes chr2R_24_8015001 chr2R_8015001 RAL-223 974 chr2R 8026763 8026836 chr2R 8026889 8026962 29 126 5.0 7.5 6.2 4.0 199 chr2R 8026763 intergenic CR45267 + chr2R 8026862 intergenic CR45267 + chr2R 8026962 intergenic CR45267 + chr2R_29_8025001 chr2R_8025001 RAL-223 975 chr2R 8049549 8049599 chr2R 8049731 8049781 17 182 10.0 9.0 9.5 1.6 232 chr2R 8049549 intergenic not near genes chr2R 8049665 intergenic not near genes chr2R 8049781 intergenic not near genes chr2R_17_8045001 chr2R_8045001 RAL-223 976 chr2R 8067020 8067086 chr2R 8067154 8067220 30 134 9.5 9.5 9.5 2.9 200 chr2R 8067020 intron CG17977 - chr2R 8067120 intron CG17977 - chr2R 8067220 exon CG17977 - chr2R_30_8065001 chr2R_8065001 RAL-223 977 chr2R 8076635 8076707 chr2R 8076765 8076837 40 130 13.0 11.5 12.2 3.0 202 chr2R 8076635 intron lig + chr2R 8076736 intron lig + chr2R 8076837 intron lig + chr2R_40_8075001 chr2R_8075001 RAL-223 978 chr2R 8089204 8089276 chr2R 8089340 8089412 26 135 4.5 8.5 6.5 3.5 208 chr2R 8089204 exon sut2 + chr2R 8089308 intergenic sut2 +,sut3 + chr2R 8089412 intergenic sut3 +,sut2 + chr2R_26_8085001 chr2R_8085001 RAL-223 979 chr2R 8157851 8157911 chr2R 8157989 8158049 22 135 8.5 6.0 7.2 2.7 198 chr2R 8157851 5` UTR CR44068 + chr2R 8157950 5` UTR CR44068 + chr2R 8158049 5` UTR CR44068 + chr2R_22_8155001 chr2R_8155001 RAL-223 980 chr2R 8160884 8160941 chr2R 8161024 8161081 1360 28 138 7.0 11.5 9.2 2.7 197 chr2R 8160884 exon CG8708 - chr2R 8160982 intron CG8708 - chr2R 8161081 intron CG8708 - chr2R_28_8160001 chr2R_8160001 RAL-223 981 chr2R 8186421 8186475 chr2R 8186595 8186649 5 174 4.5 0.0 2.2 1.6 228 chr2R 8186421 intron LRP1 + chr2R 8186535 intron LRP1 + chr2R 8186649 intron LRP1 + chr2R_5_8185001 chr2R_8185001 RAL-223 982 chr2R 8203711 8203776 chr2R 8203853 8203914 19 140 4.5 5.5 5.0 3.2 203 chr2R 8203711 intron LRP1 + chr2R 8203812 intron LRP1 + chr2R 8203914 intron LRP1 + chr2R_19_8200001 chr2R_8200001 RAL-223 983 chr2R 8209567 8209619 chr2R 8209689 8209713 15 118 9.5 6.5 8.0 1.7 146 chr2R 8209567 exon LRP1 + chr2R 8209640 intron LRP1 + chr2R 8209713 exon LRP1 + chr2R_15_8205001 chr2R_8205001 RAL-223 984 chr2R 8218485 8218517 chr2R 8218638 8218670 12 153 20.0 16.5 18.2 0.6 185 chr2R 8218485 exon LRP1 + chr2R 8218578 intron LRP1 + chr2R 8218670 intron LRP1 + chr2R_12_8215001 chr2R_8215001 RAL-223 985 chr2R 8278906 8278963 chr2R 8279122 8279193 11 224 0.0 6.5 3.2 2.6 287 chr2R 8278906 intergenic not near genes chr2R 8279050 intergenic not near genes chr2R 8279193 intergenic not near genes chr2R_11_8275001 chr2R_8275001 RAL-223 986 chr2R 8298529 8298595 chr2R 8298667 8298737 23 137 8.5 5.0 6.8 2.9 208 chr2R 8298529 intergenic mir-280 + chr2R 8298633 intergenic mir-280 + chr2R 8298737 intergenic not near genes chr2R_23_8295001 chr2R_8295001 RAL-223 987 chr2R 8330816 8330889 chr2R 8331352 8331425 roo 35 535 9.5 14.0 11.8 2.7 609 chr2R 8330816 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331425 intron pdm3 + chr2R_35_8330001 chr2R_8330001 RAL-223 988 chr2R 8339151 8339220 chr2R 8339299 8339351 21 141 7.0 6.5 6.8 2.7 200 chr2R 8339151 intron pdm3 + chr2R 8339251 intron pdm3 + chr2R 8339351 intron pdm3 + chr2R_21_8335001 chr2R_8335001 RAL-223 989 chr2R 8398168 8398234 chr2R 8402999 8403053 Doc 21 4829 8.0 7.0 7.5 2.5 4885 chr2R 8398168 intron CG2121 - chr2R 8400610 intron CG2121 - chr2R 8403053 intron CG2121 - chr2R_21_8400001 chr2R_8400001 RAL-223 990 chr2R 8416267 8416284 chr2R 8417141 8417158 I-element 11 874 21.5 11.5 16.5 0.6 891 chr2R 8416267 intergenic not near genes chr2R 8416712 intergenic CG43296 - chr2R 8417158 intergenic CG43296 - chr2R_11_8415001 chr2R_8415001 RAL-223 991 chr2R 8490560 8490581 chr2R 8492337 8492358 Rt1c 8 1776 14.0 15.5 14.8 0.5 1798 chr2R 8490560 intron mtt - chr2R 8491459 intron mtt - chr2R 8492358 intron mtt - chr2R_8_8490001 chr2R_8490001 RAL-223 992 chr2R 8635909 8635933 chr2R 8636037 8636061 7 128 0.0 19.5 9.8 0.6 152 chr2R 8635909 intergenic not near genes chr2R 8635985 intergenic not near genes chr2R 8636061 intergenic not near genes chr2R_7_8635001 chr2R_8635001 RAL-223 993 chr2R 8658219 8658258 chr2R 8658325 8658356 6 112 2.5 11.5 7.0 0.8 137 chr2R 8658219 intron ptc + chr2R 8658288 intron ptc + chr2R 8658356 intron ptc + chr2R_6_8655001 chr2R_8655001 RAL-223 994 chr2R 8671747 8671755 chr2R 8671874 8671882 4 127 14.5 12.0 13.2 0.3 135 chr2R 8671747 intron Acsl + chr2R 8671814 intron Acsl + chr2R 8671882 intron Acsl + chr2R_4_8670001 chr2R_8670001 RAL-223 995 chr2R 8671757 8671801 chr2R 8671872 8671928 20 124 8.5 12.0 10.2 1.8 171 chr2R 8671757 intron Acsl + chr2R 8671842 intron Acsl + chr2R 8671928 intron Acsl + chr2R_20_8670001 chr2R_8670001 RAL-223 996 chr2R 8671805 8671814 chr2R 8671861 8671941 9 100 7.5 12.0 9.8 0.8 136 chr2R 8671805 intron Acsl + chr2R 8671873 intron Acsl + chr2R 8671941 intron Acsl + chr2R_9_8670001 chr2R_8670001 RAL-223 997 chr2R 8722732 8722789 chr2R 8723010 8723080 pogo 24 289 6.5 8.5 7.5 2.8 348 chr2R 8722732 intron CG14767 - chr2R 8722906 intron CG14767 - chr2R 8723080 intron CG14767 - chr2R_24_8720001 chr2R_8720001 RAL-223 998 chr2R 8764074 8764127 chr2R 8764273 8764326 16 199 10.5 12.5 11.5 1.3 252 chr2R 8764074 intergenic not near genes chr2R 8764200 intergenic not near genes chr2R 8764326 intergenic not near genes chr2R_16_8760001 chr2R_8760001 RAL-223 999 chr2R 8777861 8777935 chr2R 8784102 8784130 diver 24 6239 6.5 8.5 7.5 2.8 6269 chr2R 8777861 intergenic not near genes chr2R 8780996 intergenic not near genes chr2R 8784130 intergenic not near genes chr2R_24_8780001 chr2R_8780001 RAL-223 1000 chr2R 8808241 8808302 chr2R 8808370 8808431 20 128 0.5 8.0 4.2 3.8 190 chr2R 8808241 intron sns + chr2R 8808336 intron sns + chr2R 8808431 intron sns + chr2R_20_8805001 chr2R_8805001 RAL-223 1001 chr2R 8835445 8835451 chr2R 8835618 8835623 4 173 17.5 7.0 12.2 0.3 178 chr2R 8835445 intron sns + chr2R 8835534 intron sns + chr2R 8835623 intron sns + chr2R_4_8835001 chr2R_8835001 RAL-223 1002 chr2R 8835453 8835519 chr2R 8835613 8835677 10 165 6.0 6.5 6.2 1.4 224 chr2R 8835453 intron sns + chr2R 8835565 intron sns + chr2R 8835677 intron sns + chr2R_10_8835001 chr2R_8835001 RAL-223 1003 chr2R 8849193 8849258 chr2R 8849321 8849386 16 128 9.0 6.0 7.5 1.9 193 chr2R 8849193 intron sns + chr2R 8849290 intron sns + chr2R 8849386 intron sns + chr2R_16_8845001 chr2R_8845001 RAL-223 1004 chr2R 8859840 8859903 chr2R 8861719 8861782 18 1879 15.0 31.0 23.0 0.8 1942 chr2R 8859840 intergenic not near genes chr2R 8860811 intron RyR + chr2R 8861782 intron RyR + chr2R_18_8860001 chr2R_8860001 RAL-223 1005 chr2R 8861198 8861275 chr2R 8861388 8861465 32 188 7.0 7.0 7.0 4.0 267 chr2R 8861198 intron RyR + chr2R 8861332 intron RyR + chr2R 8861465 intron RyR + chr2R_32_8860001 chr2R_8860001 RAL-223 1006 chr2R 8859888 8859964 chr2R 8861742 8861815 17 1853 19.5 33.0 26.2 0.6 1927 chr2R 8859888 intergenic RyR + chr2R 8860852 intron RyR + chr2R 8861815 intron RyR + chr2R_17_8860001 chr2R_8860001 RAL-223 1007 chr2R 9151274 9151331 chr2R 9157770 9157851 Burdock 22 6518 9.0 8.5 8.8 2.2 6577 chr2R 9151274 exon CG30345 + chr2R 9154562 intergenic not near genes chr2R 9157851 intergenic CG8008 - chr2R_22_9150001 chr2R_9150001 RAL-223 1008 chr2R 9198511 9198577 chr2R 9198643 9198716 13 133 5.0 0.0 2.5 3.7 205 chr2R 9198511 intron unpg + chr2R 9198614 intron unpg + chr2R 9198716 intron unpg + chr2R_13_9195001 chr2R_9195001 RAL-223 1009 chr2R 9212654 9212717 chr2R 9213190 9213227 roo 25 534 12.5 1.5 7.0 3.1 573 chr2R 9212654 intergenic CR45309 + chr2R 9212940 intergenic CR45309 + chr2R 9213227 5` UTR CR45309 + chr2R_25_9210001 chr2R_9210001 RAL-223 1010 chr2R 9213209 9213229 chr2R 9213335 9213336 8 122 5.0 22.0 13.5 0.6 127 chr2R 9213209 5` UTR CR45309 + chr2R 9213272 5` UTR CR45309 + chr2R 9213336 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-223 1011 chr2R 9230173 9230240 chr2R 9230303 9230370 27 130 9.0 6.0 7.5 3.2 197 chr2R 9230173 intron hig - chr2R 9230272 intron hig - chr2R 9230370 exon hig - chr2R_27_9230001 chr2R_9230001 RAL-223 1012 chr2R 9236560 9236613 chr2R 9236696 9236750 11 137 3.5 6.0 4.8 1.9 190 chr2R 9236560 intron hig - chr2R 9236655 intron hig - chr2R 9236750 intron hig - chr2R_11_9235001 chr2R_9235001 RAL-223 1013 chr2R 9268067 9268125 chr2R 9268195 9268253 25 128 3.0 2.5 2.8 6.6 186 chr2R 9268067 intron Pkn - chr2R 9268160 intron Pkn - chr2R 9268253 intron Pkn - chr2R_25_9265001 chr2R_9265001 RAL-223 1014 chr2R 9272742 9272771 chr2R 9273111 9273145 6 371 20.0 3.0 11.5 0.5 403 chr2R 9272742 intron Pkn - chr2R 9272944 intron Pkn - chr2R 9273145 intron Pkn - chr2R_6_9270001 chr2R_9270001 RAL-223 1015 chr2R 9272773 9272809 chr2R 9273107 9273181 14 371 12.5 3.0 7.8 1.6 408 chr2R 9272773 intron Pkn - chr2R 9272977 intron Pkn - chr2R 9273181 intron Pkn - chr2R_14_9270001 chr2R_9270001 RAL-223 1016 chr2R 9368076 9368134 chr2R 9368202 9368239 12 114 7.5 1.0 4.2 2.3 163 chr2R 9368076 intron CG13954 - chr2R 9368158 intron CG13954 - chr2R 9368239 intron CG13954 - chr2R_12_9365001 chr2R_9365001 RAL-223 1017 chr2R 9466623 9466685 chr2R 9466754 9466814 19 128 9.0 5.5 7.2 2.3 191 chr2R 9466623 intron Camta + chr2R 9466718 intron Camta + chr2R 9466814 intron Camta + chr2R_19_9465001 chr2R_9465001 RAL-223 1018 chr2R 9480041 9480073 chr2R 9490622 9490654 roo 11 10581 11.0 6.0 8.5 1.2 10613 chr2R 9480041 intergenic not near genes chr2R 9485348 intergenic not near genes chr2R 9490654 intergenic not near genes chr2R_11_9485001 chr2R_9485001 RAL-223 1019 chr2R 9510613 9510696 chr2R 9510779 9510862 23 166 5.0 4.5 4.8 4.0 249 chr2R 9510613 exon brp + chr2R 9510738 intron brp + chr2R 9510862 exon brp + chr2R_23_9510001 chr2R_9510001 RAL-223 1020 chr2R 9548528 9548599 chr2R 9548806 9548867 24 276 7.0 7.5 7.2 2.9 339 chr2R 9548528 intergenic not near genes chr2R 9548698 intergenic not near genes chr2R 9548867 intergenic not near genes chr2R_24_9545001 chr2R_9545001 RAL-223 1021 chr2R 9561792 9561832 chr2R 9561929 9561970 17 137 6.0 11.0 8.5 1.8 178 chr2R 9561792 3` UTR,intron CR45281 -,CG1809 + chr2R 9561881 3` UTR,intron CR45281 -,CG1809 + chr2R 9561970 3` UTR,intron CR45281 -,CG1809 + chr2R_17_9560001 chr2R_9560001 RAL-223 1022 chr2R 9649132 9649209 chr2R 9649259 9649336 30 125 7.0 8.5 7.8 3.4 204 chr2R 9649132 intron Mmp2 - chr2R 9649234 intron Mmp2 - chr2R 9649336 intron Mmp2 - chr2R_30_9645001 chr2R_9645001 RAL-223 1023 chr2R 9650995 9651022 chr2R 9651128 9651155 5 132 14.5 9.0 11.8 0.4 160 chr2R 9650995 intron Mmp2 - chr2R 9651075 intron Mmp2 - chr2R 9651155 intron Mmp2 - chr2R_5_9650001 chr2R_9650001 RAL-223 1024 chr2R 9651027 9651054 chr2R 9651118 9651167 12 127 11.0 7.0 9.0 1.2 140 chr2R 9651027 intron Mmp2 - chr2R 9651097 intron Mmp2 - chr2R 9651167 intron Mmp2 - chr2R_12_9650001 chr2R_9650001 RAL-223 1025 chr2R 9672002 9672082 chr2R 9672158 9672236 18 155 3.5 4.5 4.0 3.6 234 chr2R 9672002 intron Mmp2 - chr2R 9672119 intron Mmp2 - chr2R 9672236 intron Mmp2 - chr2R_18_9670001 chr2R_9670001 RAL-223 1026 chr2R 9677498 9677567 chr2R 9677627 9677696 22 128 6.5 5.0 5.8 3.2 198 chr2R 9677498 intron Mmp2 - chr2R 9677597 intron Mmp2 - chr2R 9677696 intron Mmp2 - chr2R_22_9675001 chr2R_9675001 RAL-223 1027 chr2R 9699365 9699435 chr2R 9699502 9699572 18 136 6.5 7.0 6.8 2.3 207 chr2R 9699365 intergenic not near genes chr2R 9699468 intergenic not near genes chr2R 9699572 intergenic not near genes chr2R_18_9695001 chr2R_9695001 RAL-223 1028 chr2R 9726571 9726634 chr2R 9734172 9734235 17.6 18 7600 9.5 8.5 9.0 1.8 7664 chr2R 9726571 intron sqa - chr2R 9730403 intron sqa - chr2R 9734235 intron sqa - chr2R_18_9730001 chr2R_9730001 RAL-223 1029 chr2R 9783099 9783168 chr2R 9783254 9783322 20 152 7.5 6.0 6.8 2.6 223 chr2R 9783099 intron CG1688 - chr2R 9783210 intron CG1688 - chr2R 9783322 intron CG1688 - chr2R_20_9780001 chr2R_9780001 RAL-223 1030 chr2R 9786063 9786127 chr2R 9786533 9786597 22 468 5.0 7.5 6.2 3.1 534 chr2R 9786063 intron CG1688 - chr2R 9786330 intron CG1688 - chr2R 9786597 intron CG1688 - chr2R_22_9785001 chr2R_9785001 RAL-223 1031 chr2R 9805401 9805428 chr2R 9805532 9805559 12 131 4.0 8.0 6.0 1.7 158 chr2R 9805401 intron CG1688 - chr2R 9805480 intron CG1688 - chr2R 9805559 intron CG1688 - chr2R_12_9805001 chr2R_9805001 RAL-223 1032 chr2R 9818568 9818569 chr2R 16880094 16880095 4 7061526 17.0 23.5 20.2 0.2 7061527 chr2R 9818568 intron CG1648 - chr2R 13349332 intron CR44206 - chr2R 16880095 intron CG8910 - chr2R_4_13345001 chr2R_13345001 RAL-223 1033 chr2R 9904254 9904263 chr2R 9904416 9904425 7 162 18.0 12.5 15.2 0.4 171 chr2R 9904254 intergenic not near genes chr2R 9904340 intergenic not near genes chr2R 9904425 intergenic not near genes chr2R_7_9900001 chr2R_9900001 RAL-223 1034 chr2R 9904264 9904329 chr2R 9904415 9904480 24 158 7.0 12.5 9.8 2.2 216 chr2R 9904264 intergenic not near genes chr2R 9904372 intergenic not near genes chr2R 9904480 intergenic not near genes chr2R_24_9900001 chr2R_9900001 RAL-223 1035 chr2R 9921158 9921164 chr2R 9921338 9921344 4 180 9.5 7.5 8.5 0.4 186 chr2R 9921158 intron Mef2 - chr2R 9921251 intron Mef2 - chr2R 9921344 intron Mef2 - chr2R_4_9920001 chr2R_9920001 RAL-223 1036 chr2R 9945396 9945464 chr2R 9945642 9945710 BS 24 246 7.5 14.0 10.8 2.0 314 chr2R 9945396 intron Mef2 - chr2R 9945553 intron Mef2 - chr2R 9945710 intron Mef2 - chr2R_24_9945001 chr2R_9945001 RAL-223 1037 chr2R 9954887 9954909 chr2R 9955019 9955041 12 131 16.5 9.0 12.8 0.9 154 chr2R 9954887 intron Mef2 - chr2R 9954964 intron Mef2 - chr2R 9955041 intron Mef2 - chr2R_12_9950001 chr2R_9950001 RAL-223 1038 chr2R 9954915 9954955 chr2R 9955017 9955087 18 127 10.5 8.5 9.5 1.7 172 chr2R 9954915 intron Mef2 - chr2R 9955001 intron Mef2 - chr2R 9955087 intron Mef2 - chr2R_18_9950001 chr2R_9950001 RAL-223 1039 chr2R 9998021 9998087 chr2R 9998165 9998231 11 144 7.5 5.0 6.2 1.5 210 chr2R 9998021 intron Pka-R2 - chr2R 9998126 intron Pka-R2 - chr2R 9998231 intron Pka-R2 - chr2R_11_9995001 chr2R_9995001 RAL-223 1040 chr2R 10005518 10005584 chr2R 10005665 10005731 20 147 5.5 7.0 6.2 2.8 213 chr2R 10005518 intron Pka-R2 - chr2R 10005624 intron Pka-R2 - chr2R 10005731 intron Pka-R2 - chr2R_20_10005001 chr2R_10005001 RAL-223 1041 chr2R 10005808 10005879 chr2R 10007023 10007094 1360 24 1212 4.0 11.0 7.5 2.8 1286 chr2R 10005808 intron Pka-R2 - chr2R 10006451 intron Pka-R2 - chr2R 10007094 intron Pka-R2 - chr2R_24_10005001 chr2R_10005001 RAL-223 1042 chr2R 10008550 10008555 chr2R 10008688 10008690 4 137 1.0 0.0 0.5 2.7 140 chr2R 10008550 intron Pka-R2 - chr2R 10008620 intron Pka-R2 - chr2R 10008690 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-223 1043 chr2R 10008565 10008594 chr2R 10008687 10008732 14 134 0.0 0.0 0.0 14.0 167 chr2R 10008565 intron Pka-R2 - chr2R 10008648 intron Pka-R2 - chr2R 10008732 intron Pka-R2 - chr2R_14_10005001 chr2R_10005001 RAL-223 1044 chr2R 10008822 10008840 chr2R 10009234 10009252 6 411 0.0 17.5 8.8 0.6 430 chr2R 10008822 intron Pka-R2 - chr2R 10009037 intron Pka-R2 - chr2R 10009252 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-223 1045 chr2R 10047777 10047834 chr2R 10047910 10047963 13 133 10.0 7.5 8.8 1.3 186 chr2R 10047777 intron oys - chr2R 10047870 intron oys - chr2R 10047963 intron oys - chr2R_13_10045001 chr2R_10045001 RAL-223 1046 chr2R 10059225 10059293 chr2R 10059654 10059712 27 436 6.0 9.5 7.8 3.1 487 chr2R 10059225 intron magu + chr2R 10059468 intron magu + chr2R 10059712 intron magu + chr2R_27_10055001 chr2R_10055001 RAL-223 1047 chr2R 10086871 10086933 chr2R 10087018 10087080 33 146 12.0 6.0 9.0 3.3 209 chr2R 10086871 intron,exon CG2269 +,sut4 - chr2R 10086976 intron,5` UTR CG2269 +,sut4 - chr2R 10087080 intron,5` UTR CG2269 +,sut4 - chr2R_33_10085001 chr2R_10085001 RAL-223 1048 chr2R 10122694 10122750 chr2R 10122954 10123010 18 260 7.5 5.5 6.5 2.4 316 chr2R 10122694 intergenic Ccs - chr2R 10122852 intergenic Ccs - chr2R 10123010 intergenic Ccs - chr2R_18_10120001 chr2R_10120001 RAL-223 1049 chr2R 10155807 10155880 chr2R 10155951 10156024 20 144 8.5 5.5 7.0 2.5 217 chr2R 10155807 intron KCNQ - chr2R 10155916 intron,3` UTR KCNQ -,mlt - chr2R 10156024 intron,3` UTR KCNQ -,mlt - chr2R_20_10155001 chr2R_10155001 RAL-223 1050 chr2R 10168312 10168339 chr2R 10168439 10168462 16 127 11.0 13.0 12.0 1.2 150 chr2R 10168312 intron KCNQ - chr2R 10168387 intron KCNQ - chr2R 10168462 intron KCNQ - chr2R_16_10165001 chr2R_10165001 RAL-223 1051 chr2R 10176187 10176261 chr2R 10176630 10176704 31 442 8.5 7.5 8.0 3.4 517 chr2R 10176187 intron KCNQ - chr2R 10176446 intron KCNQ - chr2R 10176704 intron KCNQ - chr2R_31_10175001 chr2R_10175001 RAL-223 1052 chr2R 10176836 10176904 chr2R 10186053 10186121 roo 24 9217 9.5 8.0 8.8 2.4 9285 chr2R 10176836 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186121 intron KCNQ - chr2R_24_10180001 chr2R_10180001 RAL-223 1053 chr2R 10190401 10190414 chr2R 10190536 10190549 5 134 20.5 11.0 15.8 0.3 148 chr2R 10190401 intron KCNQ - chr2R 10190475 intron KCNQ - chr2R 10190549 intron KCNQ - chr2R_5_10190001 chr2R_10190001 RAL-223 1054 chr2R 10216142 10216216 chr2R 10216270 10216312 14 125 9.0 5.0 7.0 1.8 170 chr2R 10216142 intron,intron CG12912 -,Hr46 - chr2R 10216227 intron,intron CG12912 -,Hr46 - chr2R 10216312 intron,intron CG12912 -,Hr46 - chr2R_14_10215001 chr2R_10215001 RAL-223 1055 chr2R 10225681 10225750 chr2R 10225813 10225882 14 131 5.5 5.0 5.2 2.3 201 chr2R 10225681 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225882 intron,intron CG12912 -,Hr46 - chr2R_14_10225001 chr2R_10225001 RAL-223 1056 chr2R 10257117 10257178 chr2R 10257258 10257319 19 141 6.5 0.0 3.2 4.5 202 chr2R 10257117 intron CG12911 + chr2R 10257218 intron CG12911 + chr2R 10257319 intron CG12911 + chr2R_19_10255001 chr2R_10255001 RAL-223 1057 chr2R 10266455 10266462 chr2R 10266596 10266603 6 141 20.0 3.0 11.5 0.5 148 chr2R 10266455 intron CG12910 + chr2R 10266529 intron CG12910 + chr2R 10266603 intron CG12910 + chr2R_6_10265001 chr2R_10265001 RAL-223 1058 chr2R 10266464 10266531 chr2R 10266595 10266619 19 128 4.5 3.0 3.8 4.0 155 chr2R 10266464 intron CG12910 + chr2R 10266542 intron CG12910 + chr2R 10266619 intron CG12910 + chr2R_19_10265001 chr2R_10265001 RAL-223 1059 chr2R 10307020 10307090 chr2R 10307191 10307261 29 170 10.5 10.5 10.5 2.5 241 chr2R 10307020 3` UTR CAP + chr2R 10307140 3` UTR JhI-1 - chr2R 10307261 3` UTR JhI-1 - chr2R_29_10305001 chr2R_10305001 RAL-223 1060 chr2R 10313259 10313339 chr2R 10313401 10313483 27 144 5.5 1.0 3.2 6.4 224 chr2R 10313259 intergenic not near genes chr2R 10313371 intergenic not near genes chr2R 10313483 intergenic Ndg + chr2R_27_10310001 chr2R_10310001 RAL-223 1061 chr2R 10318472 10318538 chr2R 10318608 10318674 19 136 10.5 8.0 9.2 1.9 202 chr2R 10318472 intron Ndg + chr2R 10318573 intron Ndg + chr2R 10318674 intron Ndg + chr2R_19_10315001 chr2R_10315001 RAL-223 1062 chr2R 10322033 10322071 chr2R 10322165 10322203 12 132 7.5 12.0 9.8 1.1 170 chr2R 10322033 3` UTR Ndg + chr2R 10322118 intergenic Ndg + chr2R 10322203 intergenic Ndg + chr2R_12_10320001 chr2R_10320001 RAL-223 1063 chr2R 10352626 10352688 chr2R 10352753 10352815 25 125 11.0 9.5 10.2 2.2 189 chr2R 10352626 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352720 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352815 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_25_10350001 chr2R_10350001 RAL-223 1064 chr2R 10365985 10366021 chr2R 10366113 10366149 18 126 12.5 7.5 10.0 1.6 164 chr2R 10365985 intron CG42732 - chr2R 10366067 intron CG42732 - chr2R 10366149 intron CG42732 - chr2R_18_10365001 chr2R_10365001 RAL-223 1065 chr2R 10370390 10370402 chr2R 10370615 10370627 4 225 14.0 0.0 7.0 0.5 237 chr2R 10370390 intron CG42732 - chr2R 10370508 intron CG42732 - chr2R 10370627 intron CG42732 - chr2R_4_10370001 chr2R_10370001 RAL-223 1066 chr2R 10387977 10388000 chr2R 10388124 10388147 9 147 0.0 16.0 8.0 1.0 170 chr2R 10387977 intron CG42732 - chr2R 10388062 intron CG42732 - chr2R 10388147 intron CG42732 - chr2R_9_10385001 chr2R_10385001 RAL-223 1067 chr2R 10409012 10409039 chr2R 10409139 10409166 8 127 0.0 9.5 4.8 1.4 154 chr2R 10409012 intron CG42732 - chr2R 10409089 intron CG42732 - chr2R 10409166 intron,exon CG42732 -,CG33477 - chr2R_8_10405001 chr2R_10405001 RAL-223 1068 chr2R 10409040 10409084 chr2R 10409137 10409210 11 123 0.0 9.5 4.8 1.9 170 chr2R 10409040 intron CG42732 - chr2R 10409125 intron CG42732 - chr2R 10409210 intron,exon CG42732 -,CG33477 - chr2R_11_10405001 chr2R_10405001 RAL-223 1069 chr2R 10428971 10429027 chr2R 10429098 10429154 25 127 6.5 5.0 5.8 3.7 183 chr2R 10428971 intergenic not near genes chr2R 10429062 intergenic not near genes chr2R 10429154 intergenic not near genes chr2R_25_10425001 chr2R_10425001 RAL-223 1070 chr2R 10454053 10454127 chr2R 10454180 10454251 40 124 9.5 8.5 9.0 4.0 198 chr2R 10454053 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454251 intron,intron Galphao +,Cyp49a1 - chr2R_40_10450001 chr2R_10450001 RAL-223 1071 chr2R 10548079 10548136 chr2R 10548206 10548246 35 122 8.5 16.5 12.5 2.6 167 chr2R 10548079 intergenic not near genes chr2R 10548162 intergenic not near genes chr2R 10548246 intergenic not near genes chr2R_35_10545001 chr2R_10545001 RAL-223 1072 chr2R 10562943 10563202 chr2R 10563064 10563350 11 128 0.0 0.0 0.0 11.0 407 chr2R 10562943 intron psq + chr2R 10563146 intron psq + chr2R 10563350 intron psq + chr2R_11_10560001 chr2R_10560001 RAL-223 1073 chr2R 10563228 10563232 chr2R 10563376 10563380 4 148 0.0 11.5 5.8 0.6 152 chr2R 10563228 intron psq + chr2R 10563304 intron psq + chr2R 10563380 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-223 1074 chr2R 10563902 10563914 chr2R 10564143 10564155 7 241 0.0 10.5 5.2 1.1 253 chr2R 10563902 intron psq + chr2R 10564028 intron psq + chr2R 10564155 intron psq + chr2R_7_10560001 chr2R_10560001 RAL-223 1075 chr2R 10574578 10574627 chr2R 10574710 10574759 12 132 12.0 9.0 10.5 1.0 181 chr2R 10574578 intron psq + chr2R 10574668 intron psq + chr2R 10574759 intron psq + chr2R_12_10570001 chr2R_10570001 RAL-223 1076 chr2R 10577414 10577491 chr2R 10577549 10577626 24 135 6.0 5.0 5.5 3.7 212 chr2R 10577414 intron psq + chr2R 10577520 intron psq + chr2R 10577626 intron psq + chr2R_24_10575001 chr2R_10575001 RAL-223 1077 chr2R 10585513 10585583 chr2R 10594146 10594190 Tirant 6 8624 7.0 7.5 7.2 0.7 8677 chr2R 10585513 intron psq + chr2R 10589852 intron psq + chr2R 10594190 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-223 1078 chr2R 10644012 10644058 chr2R 10644140 10644186 21 128 1.0 0.0 0.5 14.0 174 chr2R 10644012 intron Git - chr2R 10644099 intron Git - chr2R 10644186 intron Git - chr2R_21_10640001 chr2R_10640001 RAL-223 1079 chr2R 10693818 10693826 chr2R 10693950 10693958 6 132 15.5 7.5 11.5 0.5 140 chr2R 10693818 intron stan + chr2R 10693888 intron stan + chr2R 10693958 intron stan + chr2R_6_10690001 chr2R_10690001 RAL-223 1080 chr2R 10693828 10693880 chr2R 10693949 10694012 14 131 9.0 7.5 8.2 1.5 184 chr2R 10693828 intron stan + chr2R 10693920 intron stan + chr2R 10694012 intron stan + chr2R_14_10690001 chr2R_10690001 RAL-223 1081 chr2R 10727452 10727526 chr2R 10727594 10727673 24 144 7.0 5.0 6.0 3.4 221 chr2R 10727452 intron Rab3 - chr2R 10727562 intron Rab3 - chr2R 10727673 intron Rab3 - chr2R_24_10725001 chr2R_10725001 RAL-223 1082 chr2R 10914039 10914098 chr2R 10914166 10914185 12 123 0.5 0.0 0.2 10.0 146 chr2R 10914039 intergenic not near genes chr2R 10914112 intergenic not near genes chr2R 10914185 intergenic not near genes chr2R_12_10910001 chr2R_10910001 RAL-223 1083 chr2R 10948014 10948054 chr2R 10955589 10955655 17.6 16 7599 0.0 9.5 4.8 2.8 7641 chr2R 10948014 intergenic not near genes chr2R 10951834 intergenic not near genes chr2R 10955655 intergenic not near genes chr2R_16_10950001 chr2R_10950001 RAL-223 1084 chr2R 10959040 10959101 chr2R 10959169 10959230 17 129 0.0 9.0 4.5 3.1 190 chr2R 10959040 intergenic not near genes chr2R 10959135 intergenic not near genes chr2R 10959230 intergenic not near genes chr2R_17_10955001 chr2R_10955001 RAL-223 1085 chr2R 10979616 10979683 chr2R 10980137 10980201 297 15 517 5.0 10.5 7.8 1.7 585 chr2R 10979616 intergenic not near genes chr2R 10979908 intergenic not near genes chr2R 10980201 intergenic not near genes chr2R_15_10975001 chr2R_10975001 RAL-223 1086 chr2R 11009787 11009841 chr2R 11019011 11019065 roo 25 9223 10.0 10.0 10.0 2.3 9278 chr2R 11009787 intron luna - chr2R 11014426 intron luna - chr2R 11019065 intron luna - chr2R_25_11010001 chr2R_11010001 RAL-223 1087 chr2R 11019835 11019894 chr2R 11024951 11025010 jockey 19 5114 7.5 5.5 6.5 2.5 5175 chr2R 11019835 intron luna - chr2R 11022422 intron luna - chr2R 11025010 intron luna - chr2R_19_11020001 chr2R_11020001 RAL-223 1088 chr2R 11019896 11019903 chr2R 11024950 11025019 jockey 9 5109 6.0 5.5 5.8 1.3 5123 chr2R 11019896 intron luna - chr2R 11022458 intron luna - chr2R 11025019 intron luna - chr2R_9_11020001 chr2R_11020001 RAL-223 1089 chr2R 11052195 11052246 chr2R 11052324 11052335 12 117 4.5 5.0 4.8 2.1 140 chr2R 11052195 intron luna - chr2R 11052265 intron luna - chr2R 11052335 intron luna - chr2R_12_11050001 chr2R_11050001 RAL-223 1090 chr2R 11102821 11102894 chr2R 11102953 11103026 21 132 7.5 0.0 3.8 4.4 205 chr2R 11102821 intron luna - chr2R 11102924 intron luna - chr2R 11103026 intron luna - chr2R_21_11100001 chr2R_11100001 RAL-223 1091 chr2R 11158820 11158892 chr2R 11159039 11159111 27 218 5.5 7.0 6.2 3.8 291 chr2R 11158820 intron CG13229 - chr2R 11158966 intron CG13229 - chr2R 11159111 intron,5` UTR CG13229 -,shn + chr2R_27_11155001 chr2R_11155001 RAL-223 1092 chr2R 11161054 11161116 chr2R 11161360 11161422 20 305 12.5 11.0 11.8 1.6 368 chr2R 11161054 intron,intron CG13229 -,shn + chr2R 11161238 intron,intron CG13229 -,shn + chr2R 11161422 intron,intron CG13229 -,shn + chr2R_20_11160001 chr2R_11160001 RAL-223 1093 chr2R 11171495 11171554 chr2R 11171697 11171761 30 206 8.0 11.0 9.5 2.9 266 chr2R 11171495 intron,intron CG13229 -,shn + chr2R 11171628 intron,intron CG13229 -,shn + chr2R 11171761 intron,intron CG13229 -,shn + chr2R_30_11170001 chr2R_11170001 RAL-223 1094 chr2R 11179221 11179279 chr2R 11179357 11179415 23 136 8.0 12.5 10.2 2.1 194 chr2R 11179221 intron shn + chr2R 11179318 intron shn + chr2R 11179415 intron shn + chr2R_23_11175001 chr2R_11175001 RAL-223 1095 chr2R 11194840 11194848 chr2R 11194999 11195007 6 159 0.0 9.0 4.5 1.1 167 chr2R 11194840 intron shn + chr2R 11194924 intron shn + chr2R 11195007 intron shn + chr2R_6_11190001 chr2R_11190001 RAL-223 1096 chr2R 11202086 11202098 chr2R 11202230 11202242 6 144 17.5 9.0 13.2 0.4 156 chr2R 11202086 intron shn + chr2R 11202164 intron shn + chr2R 11202242 intron shn + chr2R_6_11200001 chr2R_11200001 RAL-223 1097 chr2R 11202100 11202142 chr2R 11202220 11202286 14 142 8.5 6.5 7.5 1.6 186 chr2R 11202100 intron shn + chr2R 11202193 intron shn + chr2R 11202286 intron shn + chr2R_14_11200001 chr2R_11200001 RAL-223 1098 chr2R 11207788 11207823 chr2R 11208031 11208066 BS 21 242 20.0 15.0 17.5 1.1 278 chr2R 11207788 intron shn + chr2R 11207927 intron shn + chr2R 11208066 intron shn + chr2R_21_11205001 chr2R_11205001 RAL-223 1099 chr2R 11207824 11207839 chr2R 11208024 11208082 BS 5 234 16.0 13.5 14.8 0.3 258 chr2R 11207824 intron shn + chr2R 11207953 intron shn + chr2R 11208082 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-223 1100 chr2R 11232762 11232838 chr2R 11232898 11232978 13 137 1.5 6.5 4.0 2.6 216 chr2R 11232762 intergenic metro -,CG13218 - chr2R 11232870 intergenic CG13218 -,metro - chr2R 11232978 intergenic CG13218 -,metro - chr2R_13_11230001 chr2R_11230001 RAL-223 1101 chr2R 11249127 11249190 chr2R 11249303 11249339 9 173 0.0 0.0 0.0 9.0 212 chr2R 11249127 intergenic CG43112 + chr2R 11249233 intergenic CG43112 + chr2R 11249339 intergenic CG43112 + chr2R_9_11245001 chr2R_11245001 RAL-223 1102 chr2R 11265679 11265690 chr2R 11265811 11265822 5 132 16.5 0.0 8.2 0.5 143 chr2R 11265679 exon Cpr47Ee + chr2R 11265750 exon Cpr47Ee + chr2R 11265822 intron Cpr47Ee + chr2R_5_11265001 chr2R_11265001 RAL-223 1103 chr2R 11276754 11276816 chr2R 11276972 11277034 34 218 12.0 5.0 8.5 3.6 280 chr2R 11276754 intergenic not near genes chr2R 11276894 intergenic not near genes chr2R 11277034 intergenic not near genes chr2R_34_11275001 chr2R_11275001 RAL-223 1104 chr2R 11292923 11292994 chr2R 11293052 11293141 31 140 9.0 1.0 5.0 5.2 218 chr2R 11292923 exon,3` UTR dare -,CG30033 + chr2R 11293032 5` UTR,3` UTR dare -,CG30033 + chr2R 11293141 5` UTR,3` UTR dare -,CG30033 + chr2R_31_11290001 chr2R_11290001 RAL-223 1105 chr2R 11297579 11297641 chr2R 11301950 11302011 flea 33 4370 11.0 10.0 10.5 2.9 4432 chr2R 11297579 intergenic CG42336 - chr2R 11299795 intergenic not near genes chr2R 11302011 5` UTR CG7741 + chr2R_33_11295001 chr2R_11295001 RAL-223 1106 chr2R 11344102 11344180 chr2R 11344248 11344322 14 146 0.0 9.5 4.8 2.4 220 chr2R 11344102 intergenic alphaTry - chr2R 11344212 intergenic alphaTry - chr2R 11344322 exon alphaTry - chr2R_14_11340001 chr2R_11340001 RAL-223 1107 chr2R 11367660 11367663 chr2R 12699805 12699808 5 1332145 10.0 15.5 12.8 0.4 1332148 chr2R 11367660 intron CG13204 + chr2R 12033734 intergenic pds5 +,CG8321 + chr2R 12699808 intergenic wuc + chr2R_5_12030001 chr2R_12030001 RAL-223 1108 chr2R 11367993 11368056 chr2R 11368119 11368182 17 125 7.0 13.0 10.0 1.5 189 chr2R 11367993 intron CG13204 + chr2R 11368088 intron CG13204 + chr2R 11368182 intron CG13204 + chr2R_17_11365001 chr2R_11365001 RAL-223 1109 chr2R 11415478 11415546 chr2R 11418671 11418745 opus 33 3197 9.5 7.5 8.5 3.5 3267 chr2R 11415478 intron Drip - chr2R 11417112 intron Drip - chr2R 11418745 intron Drip - chr2R_33_11415001 chr2R_11415001 RAL-223 1110 chr2R 11419820 11419886 chr2R 11420000 11420066 28 179 5.5 5.5 5.5 4.3 246 chr2R 11419820 intron Drip - chr2R 11419943 intron Drip - chr2R 11420066 intron Drip - chr2R_28_11415001 chr2R_11415001 RAL-223 1111 chr2R 11445168 11445235 chr2R 11445302 11445366 15 132 7.0 6.0 6.5 2.0 198 chr2R 11445168 intron qvr + chr2R 11445267 intron qvr + chr2R 11445366 intron qvr + chr2R_15_11445001 chr2R_11445001 RAL-223 1112 chr2R 11472603 11472675 chr2R 11473850 11473922 pogo 31 1247 7.0 7.0 7.0 3.9 1319 chr2R 11472603 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473922 intergenic not near genes chr2R_31_11470001 chr2R_11470001 RAL-223 1113 chr2R 11493239 11493293 chr2R 11493368 11493427 21 132 8.0 12.0 10.0 1.9 188 chr2R 11493239 intron inv + chr2R 11493333 intron inv + chr2R 11493427 intron inv + chr2R_21_11490001 chr2R_11490001 RAL-223 1114 chr2R 11493834 11493866 chr2R 11494254 11494286 9 420 9.5 12.5 11.0 0.8 452 chr2R 11493834 intron inv + chr2R 11494060 intron inv + chr2R 11494286 intron inv + chr2R_9_11490001 chr2R_11490001 RAL-223 1115 chr2R 11497598 11497658 chr2R 11497727 11497787 9 129 3.0 3.5 3.2 2.1 189 chr2R 11497598 intron inv + chr2R 11497692 intron inv + chr2R 11497787 intron inv + chr2R_9_11495001 chr2R_11495001 RAL-223 1116 chr2R 11498789 11498855 chr2R 11498962 11499044 16 179 9.0 0.0 4.5 2.9 255 chr2R 11498789 intron inv + chr2R 11498916 intron inv + chr2R 11499044 intron inv + chr2R_16_11495001 chr2R_11495001 RAL-223 1117 chr2R 11555350 11555420 chr2R 11555735 11555805 24 384 7.5 8.0 7.8 2.7 455 chr2R 11555350 intergenic not near genes chr2R 11555578 intergenic not near genes chr2R 11555805 intergenic not near genes chr2R_24_11555001 chr2R_11555001 RAL-223 1118 chr2R 11572903 11572987 chr2R 11573053 11573120 20 137 3.5 0.0 1.8 7.1 217 chr2R 11572903 intergenic not near genes chr2R 11573012 intergenic not near genes chr2R 11573120 intergenic not near genes chr2R_20_11570001 chr2R_11570001 RAL-223 1119 chr2R 11614576 11614800 chr2R 11614714 11614938 21 138 0.0 0.0 0.0 21.0 362 chr2R 11614576 intron tou - chr2R 11614757 intron tou - chr2R 11614938 intron tou - chr2R_21_11610001 chr2R_11610001 RAL-223 1120 chr2R 11636361 11636409 chr2R 11636489 11636537 16 125 18.0 6.5 12.2 1.2 176 chr2R 11636361 intron CG9005 - chr2R 11636449 intron CG9005 - chr2R 11636537 intron CG9005 - chr2R_16_11635001 chr2R_11635001 RAL-223 1121 chr2R 11636411 11636441 chr2R 11636486 11636569 12 117 15.0 8.5 11.8 0.9 158 chr2R 11636411 intron CG9005 - chr2R 11636490 intron CG9005 - chr2R 11636569 intron CG9005 - chr2R_12_11635001 chr2R_11635001 RAL-223 1122 chr2R 11672802 11672847 chr2R 11672938 11672974 22 136 5.5 6.5 6.0 3.1 172 chr2R 11672802 intron,exon Roc2 -,Tret1-1 + chr2R 11672888 intron,intron Roc2 -,Tret1-1 + chr2R 11672974 intron,intron Roc2 -,Tret1-1 + chr2R_22_11670001 chr2R_11670001 RAL-223 1123 chr2R 11801340 11801395 chr2R 11801525 11801580 23 185 6.5 7.5 7.0 2.9 240 chr2R 11801340 intron ths + chr2R 11801460 intron ths + chr2R 11801580 intron ths + chr2R_23_11800001 chr2R_11800001 RAL-223 1124 chr2R 11822930 11822944 chr2R 11823057 11823071 5 127 0.5 1.5 1.0 2.5 141 chr2R 11822930 intergenic not near genes chr2R 11823000 intergenic not near genes chr2R 11823071 intergenic not near genes chr2R_5_11820001 chr2R_11820001 RAL-223 1125 chr2R 11822949 11823006 chr2R 11823055 11823057 20 121 0.5 1.5 1.0 10.0 108 chr2R 11822949 intergenic not near genes chr2R 11823003 intergenic not near genes chr2R 11823057 intergenic not near genes chr2R_20_11820001 chr2R_11820001 RAL-223 1126 chr2R 11863836 11863874 chr2R 11863973 11864011 17 137 9.0 7.0 8.0 1.9 175 chr2R 11863836 intergenic CG42531 + chr2R 11863924 intergenic CG42531 + chr2R 11864011 intergenic CG42531 + chr2R_17_11860001 chr2R_11860001 RAL-223 1127 chr2R 11922697 11922765 chr2R 11922826 11922894 19 129 9.0 5.0 7.0 2.4 197 chr2R 11922697 intergenic not near genes chr2R 11922796 intergenic not near genes chr2R 11922894 intergenic not near genes chr2R_19_11920001 chr2R_11920001 RAL-223 1128 chr2R 11925486 11925523 chr2R 11925613 11925658 6 134 15.0 1.5 8.2 0.7 172 chr2R 11925486 intergenic not near genes chr2R 11925572 intergenic not near genes chr2R 11925658 intergenic not near genes chr2R_6_11925001 chr2R_11925001 RAL-223 1129 chr2R 12061016 12061061 chr2R 12061146 12061192 7 130 7.0 0.0 3.5 1.6 176 chr2R 12061016 intron Drep-3 + chr2R 12061104 intron Drep-3 + chr2R 12061192 intron Drep-3 + chr2R_7_12060001 chr2R_12060001 RAL-223 1130 chr2R 12073348 12073423 chr2R 12073488 12073563 29 140 10.5 6.5 8.5 3.1 215 chr2R 12073348 intron CG8888 - chr2R 12073456 intron CG8888 - chr2R 12073563 intron CG8888 - chr2R_29_12070001 chr2R_12070001 RAL-223 1131 chr2R 12093907 12093977 chr2R 12094070 12094141 19 163 5.0 9.0 7.0 2.4 234 chr2R 12093907 intron jeb - chr2R 12094024 intron jeb - chr2R 12094141 intron jeb - chr2R_19_12090001 chr2R_12090001 RAL-223 1132 chr2R 12108057 12108069 chr2R 12108212 12108224 9 155 7.5 0.5 4.0 1.8 167 chr2R 12108057 intron jeb - chr2R 12108140 intron jeb - chr2R 12108224 intron jeb - chr2R_9_12105001 chr2R_12105001 RAL-223 1133 chr2R 12126819 12126890 chr2R 12126958 12127022 22 139 10.5 8.0 9.2 2.2 203 chr2R 12126819 intergenic not near genes chr2R 12126920 intergenic not near genes chr2R 12127022 intergenic not near genes chr2R_22_12125001 chr2R_12125001 RAL-223 1134 chr2R 12146423 12146502 chr2R 12147595 12147621 35 1168 53.5 39.5 46.5 0.7 1198 chr2R 12146423 intron,3` UTR Hen1 +,CG8878 - chr2R 12147022 intron,exon Hen1 +,CG8878 - chr2R 12147621 intron,exon Hen1 +,CG8878 - chr2R_35_12145001 chr2R_12145001 RAL-223 1135 chr2R 12145921 12145928 chr2R 12148564 12148586 14 2644 55.5 55.0 55.2 0.2 2665 chr2R 12145921 exon Hen1 + chr2R 12147254 intron,intron Hen1 +,CG8878 - chr2R 12148586 intron,exon Hen1 +,CG8878 - chr2R_14_12145001 chr2R_12145001 RAL-223 1136 chr2R 12145909 12145989 chr2R 12148587 12148632 20 2649 65.0 47.5 56.2 0.3 2723 chr2R 12145909 exon Hen1 + chr2R 12147270 intron,intron Hen1 +,CG8878 - chr2R 12148632 intron,exon Hen1 +,CG8878 - chr2R_20_12145001 chr2R_12145001 RAL-223 1137 chr2R 12185956 12186037 chr2R 12186101 12186101 58 143 4.5 15.5 10.0 5.3 145 chr2R 12185956 intron Cyp6g1 + chr2R 12186028 intron Cyp6g1 + chr2R 12186101 intron Cyp6g1 + chr2R_58_12185001 chr2R_12185001 RAL-223 1138 chr2R 12185226 12185268 chr2R 12188101 12188143 22 2876 40.0 229.5 134.8 0.2 2917 chr2R 12185226 3` UTR,exon CG13175 +,CG33964 + chr2R 12186684 exon Cyp6g1 + chr2R 12188143 3` UTR Cyp6g1 + chr2R_22_12185001 chr2R_12185001 RAL-223 1139 chr2R 12189358 12189400 chr2R 12189597 12189603 14 238 178.5 144.0 161.2 0.1 245 chr2R 12189358 exon Cyp6g2 - chr2R 12189480 exon Cyp6g2 - chr2R 12189603 exon Cyp6g2 - chr2R_14_12185001 chr2R_12185001 RAL-223 1140 chr2R 12187482 12187502 chr2R 12190048 12190068 25 2567 133.0 160.5 146.8 0.2 2586 chr2R 12187482 exon Cyp6g1 + chr2R 12188775 exon Cyp6g2 - chr2R 12190068 exon Cyp6g2 - chr2R_25_12185001 chr2R_12185001 RAL-223 1141 chr2R 12187478 12187499 chr2R 12190069 12190120 80 2574 127.0 137.5 132.2 0.6 2642 chr2R 12187478 exon Cyp6g1 + chr2R 12188799 exon Cyp6g2 - chr2R 12190120 exon Cyp6g2 - chr2R_80_12185001 chr2R_12185001 RAL-223 1142 chr2R 12217529 12217603 chr2R 12217660 12217734 35 131 7.0 9.0 8.0 3.9 205 chr2R 12217529 intergenic not near genes chr2R 12217632 intergenic not near genes chr2R 12217734 intergenic not near genes chr2R_35_12215001 chr2R_12215001 RAL-223 1143 chr2R 12284265 12284327 chr2R 12284399 12284461 9 134 0.0 6.5 3.2 2.1 196 chr2R 12284265 intron CG42700 + chr2R 12284363 intron CG42700 + chr2R 12284461 intron CG42700 + chr2R_9_12280001 chr2R_12280001 RAL-223 1144 chr2R 12320675 12320731 chr2R 12320985 12321041 19 310 11.5 13.0 12.2 1.4 366 chr2R 12320675 3` UTR CR44316 - chr2R 12320858 intron CR44316 - chr2R 12321041 intergenic CR44316 -,CG13163 + chr2R_19_12320001 chr2R_12320001 RAL-223 1145 chr2R 12334842 12334865 chr2R 12334970 12334978 7 126 13.5 8.5 11.0 0.6 136 chr2R 12334842 intergenic CG8490 + chr2R 12334910 intergenic CG8490 + chr2R 12334978 intergenic CG8490 + chr2R_7_12330001 chr2R_12330001 RAL-223 1146 chr2R 12413117 12413128 chr2R 12413243 12413254 4 126 5.0 0.0 2.5 1.1 137 chr2R 12413117 intergenic not near genes chr2R 12413186 intergenic not near genes chr2R 12413254 intergenic not near genes chr2R_4_12410001 chr2R_12410001 RAL-223 1147 chr2R 12481139 12481162 chr2R 12482940 12482990 roo 12 1833 5.5 10.5 8.0 1.3 1851 chr2R 12481139 exon Dh44-R2 + chr2R 12482064 intron Dh44-R2 + chr2R 12482990 intron Dh44-R2 + chr2R_12_12480001 chr2R_12480001 RAL-223 1148 chr2R 12501664 12501717 chr2R 12503863 12503922 Rt1c 30 2207 10.5 9.0 9.8 2.8 2258 chr2R 12501664 intron fdl - chr2R 12502793 intron fdl - chr2R 12503922 intron fdl - chr2R_30_12500001 chr2R_12500001 RAL-223 1149 chr2R 12533100 12533171 chr2R 12533308 12533356 28 207 6.0 6.5 6.2 3.9 256 chr2R 12533100 intron fra + chr2R 12533228 intron fra + chr2R 12533356 intron fra + chr2R_28_12530001 chr2R_12530001 RAL-223 1150 chr2R 12565544 12565588 chr2R 12565977 12566021 14 433 0.5 5.0 2.8 3.7 477 chr2R 12565544 intergenic not near genes chr2R 12565782 intergenic Cyp301a1 + chr2R 12566021 intergenic Cyp301a1 + chr2R_14_12565001 chr2R_12565001 RAL-223 1151 chr2R 12665978 12666052 chr2R 12666116 12666190 33 138 7.5 5.5 6.5 4.4 212 chr2R 12665978 intron nemy - chr2R 12666084 intron nemy - chr2R 12666190 intron nemy - chr2R_33_12665001 chr2R_12665001 RAL-223 1152 chr2R 12707469 12707541 chr2R 12715885 12715957 roo 18 8415 6.0 3.5 4.8 3.1 8488 chr2R 12707469 intron CG42663 + chr2R 12711713 intron CG42663 + chr2R 12715957 intron CG42663 + chr2R_18_12710001 chr2R_12710001 RAL-223 1153 chr2R 12777764 12777813 chr2R 12777923 12777972 12 159 7.5 9.5 8.5 1.3 208 chr2R 12777764 5` UTR CR45266 + chr2R 12777868 5` UTR CR45266 + chr2R 12777972 5` UTR CR45266 + chr2R_12_12775001 chr2R_12775001 RAL-223 1154 chr2R 12789250 12789322 chr2R 12797663 12797735 roo 28 8408 9.0 5.5 7.2 3.4 8485 chr2R 12789250 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797735 intron,3` UTR sca +,CR45137 - chr2R_28_12790001 chr2R_12790001 RAL-223 1155 chr2R 12819161 12819180 chr2R 12819331 12819350 8 170 3.5 15.5 9.5 0.8 189 chr2R 12819161 intergenic not near genes chr2R 12819256 intergenic not near genes chr2R 12819350 intergenic not near genes chr2R_8_12815001 chr2R_12815001 RAL-223 1156 chr2R 12819414 12819470 chr2R 12824525 12824546 jockey 24 5110 8.5 4.0 6.2 3.3 5132 chr2R 12819414 intergenic not near genes chr2R 12821980 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_24_12820001 chr2R_12820001 RAL-223 1157 chr2R 13043014 13043040 chr2R 13043144 13043170 8 130 0.0 10.0 5.0 1.3 156 chr2R 13043014 intergenic not near genes chr2R 13043092 intergenic not near genes chr2R 13043170 intergenic not near genes chr2R_8_13040001 chr2R_13040001 RAL-223 1158 chr2R 13055127 13055180 chr2R 13055249 13055289 15 127 5.0 10.0 7.5 1.8 162 chr2R 13055127 intergenic Drl-2 - chr2R 13055208 intergenic Drl-2 - chr2R 13055289 3` UTR Drl-2 - chr2R_15_13055001 chr2R_13055001 RAL-223 1159 chr2R 13061300 13061382 chr2R 13061431 13061503 24 131 6.0 5.5 5.8 3.5 203 chr2R 13061300 intron Drl-2 - chr2R 13061402 intron Drl-2 - chr2R 13061503 intron Drl-2 - chr2R_24_13060001 chr2R_13060001 RAL-223 1160 chr2R 13089557 13089627 chr2R 13089862 13089932 30 303 9.5 10.5 10.0 2.7 375 chr2R 13089557 intergenic not near genes chr2R 13089744 intergenic not near genes chr2R 13089932 intergenic not near genes chr2R_30_13085001 chr2R_13085001 RAL-223 1161 chr2R 13107814 13107825 chr2R 13107953 13107964 6 139 16.5 0.0 8.2 0.7 150 chr2R 13107814 intergenic not near genes chr2R 13107889 intergenic not near genes chr2R 13107964 intergenic not near genes chr2R_6_13105001 chr2R_13105001 RAL-223 1162 chr2R 13125637 13125707 chr2R 13125787 13125840 11 142 0.0 8.0 4.0 2.2 203 chr2R 13125637 exon CG13325 + chr2R 13125738 3` UTR CG13325 + chr2R 13125840 intergenic CG13325 + chr2R_11_13125001 chr2R_13125001 RAL-223 1163 chr2R 13136799 13136819 chr2R 13141647 13141667 Doc 8 4848 19.5 11.5 15.5 0.5 4868 chr2R 13136799 exon Cap-G + chr2R 13139233 intron Cap-G + chr2R 13141667 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-223 1164 chr2R 13136822 13136846 chr2R 13141640 13141694 Doc 9 4843 14.5 10.0 12.2 0.7 4872 chr2R 13136822 exon Cap-G + chr2R 13139258 intron Cap-G + chr2R 13141694 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-223 1165 chr2R 13172048 13172119 chr2R 13172176 13172247 12 128 3.5 6.5 5.0 2.0 199 chr2R 13172048 intron AGBE + chr2R 13172148 intron AGBE + chr2R 13172247 intron AGBE + chr2R_12_13170001 chr2R_13170001 RAL-223 1166 chr2R 13213379 13213428 chr2R 13213516 13213565 15 136 3.0 0.0 1.5 6.0 186 chr2R 13213379 exon AQP - chr2R 13213472 intron AQP - chr2R 13213565 intron AQP - chr2R_15_13210001 chr2R_13210001 RAL-223 1167 chr2R 13218255 13218273 chr2R 13218388 13218406 6 133 20.5 0.0 10.2 0.5 151 chr2R 13218255 intron CG4630 - chr2R 13218330 intron CG4630 - chr2R 13218406 intron CG4630 - chr2R_6_13215001 chr2R_13215001 RAL-223 1168 chr2R 13261111 13261173 chr2R 13261256 13261318 17 145 0.0 10.5 5.2 2.7 207 chr2R 13261111 intron CG42319 + chr2R 13261214 intron CG42319 + chr2R 13261318 intron CG42319 + chr2R_17_13260001 chr2R_13260001 RAL-223 1169 chr2R 13300786 13300794 chr2R 13300918 13300926 5 132 13.0 0.0 6.5 0.7 140 chr2R 13300786 exon CG17047 + chr2R 13300856 intron CG17047 + chr2R 13300926 intron CG17047 + chr2R_5_13300001 chr2R_13300001 RAL-223 1170 chr2R 13309612 13309665 chr2R 13309780 13309822 15 167 10.0 4.5 7.2 1.8 210 chr2R 13309612 intergenic not near genes chr2R 13309717 intergenic not near genes chr2R 13309822 intergenic not near genes chr2R_15_13305001 chr2R_13305001 RAL-223 1171 chr2R 13348939 13349008 chr2R 13349070 13349154 18 134 4.0 0.0 2.0 6.0 215 chr2R 13348939 intron CR44206 - chr2R 13349046 intron CR44206 - chr2R 13349154 intron CR44206 - chr2R_18_13345001 chr2R_13345001 RAL-223 1172 chr2R 13356470 13356487 chr2R 13356605 13356621 8 135 18.5 0.0 9.2 0.8 151 chr2R 13356470 intergenic not near genes chr2R 13356546 intergenic not near genes chr2R 13356621 intergenic not near genes chr2R_8_13355001 chr2R_13355001 RAL-223 1173 chr2R 13376606 13376626 chr2R 13376766 13376786 9 160 1.0 10.0 5.5 1.4 180 chr2R 13376606 intron CG10814 - chr2R 13376696 intron CG10814 - chr2R 13376786 intron CG10814 - chr2R_9_13375001 chr2R_13375001 RAL-223 1174 chr2R 13403872 13403936 chr2R 13404007 13404071 22 135 3.5 0.0 1.8 7.9 199 chr2R 13403872 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404071 intergenic not near genes chr2R_22_13400001 chr2R_13400001 RAL-223 1175 chr2R 13446641 13446671 chr2R 13446772 13446802 14 131 13.0 0.0 6.5 1.9 161 chr2R 13446641 intron cnn - chr2R 13446722 intron cnn - chr2R 13446802 intron cnn - chr2R_14_13445001 chr2R_13445001 RAL-223 1176 chr2R 13523382 13523455 chr2R 13523535 13523598 8 151 0.0 0.0 0.0 8.0 216 chr2R 13523382 intron Vmat - chr2R 13523490 intron Vmat - chr2R 13523598 intron Vmat - chr2R_8_13520001 chr2R_13520001 RAL-223 1177 chr2R 13532473 13532529 chr2R 13532639 13532695 15 166 6.0 6.0 6.0 2.1 222 chr2R 13532473 intron Vmat - chr2R 13532584 intron Vmat - chr2R 13532695 intron Vmat - chr2R_15_13530001 chr2R_13530001 RAL-223 1178 chr2R 13540152 13540208 chr2R 13540284 13540341 9 132 2.0 0.0 1.0 4.5 189 chr2R 13540152 intron CG6145 - chr2R 13540246 intron CG6145 - chr2R 13540341 intron CG6145 - chr2R_9_13540001 chr2R_13540001 RAL-223 1179 chr2R 13554696 13554769 chr2R 13554831 13554904 7 135 0.0 9.0 4.5 1.3 208 chr2R 13554696 intron Roe1 + chr2R 13554800 intron Roe1 + chr2R 13554904 intron Roe1 + chr2R_7_13550001 chr2R_13550001 RAL-223 1180 chr2R 13574354 13574426 chr2R 13574485 13574557 25 130 8.5 4.0 6.2 3.5 203 chr2R 13574354 intergenic CG42808 - chr2R 13574456 intergenic CG42808 -,CR44365 + chr2R 13574557 intergenic CG42808 -,CR44365 + chr2R_25_13570001 chr2R_13570001 RAL-223 1181 chr2R 13580455 13580521 chr2R 13580855 13580893 jockey 21 398 11.0 5.5 8.2 2.3 438 chr2R 13580455 3` UTR CG6191 - chr2R 13580674 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580893 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_21_13580001 chr2R_13580001 RAL-223 1182 chr2R 13622167 13622185 chr2R 13622298 13622316 10 131 0.0 10.0 5.0 1.7 149 chr2R 13622167 intergenic not near genes chr2R 13622242 intergenic not near genes chr2R 13622316 intergenic not near genes chr2R_10_13620001 chr2R_13620001 RAL-223 1183 chr2R 13649973 13650033 chr2R 13650118 13650178 15 145 6.0 10.0 8.0 1.7 205 chr2R 13649973 intron fas + chr2R 13650076 intron fas + chr2R 13650178 intron fas + chr2R_15_13650001 chr2R_13650001 RAL-223 1184 chr2R 13700457 13700532 chr2R 13700584 13700659 22 121 6.0 7.5 6.8 2.8 202 chr2R 13700457 intron fas + chr2R 13700558 intron fas + chr2R 13700659 intron fas + chr2R_22_13700001 chr2R_13700001 RAL-223 1185 chr2R 13702110 13702178 chr2R 13702239 13702307 21 128 6.0 6.0 6.0 3.0 197 chr2R 13702110 intron fas + chr2R 13702208 intron fas + chr2R 13702307 intron fas + chr2R_21_13700001 chr2R_13700001 RAL-223 1186 chr2R 13715336 13715410 chr2R 13715661 13715735 28 325 9.0 6.0 7.5 3.3 399 chr2R 13715336 intron fas + chr2R 13715536 intron fas + chr2R 13715735 intron fas + chr2R_28_13715001 chr2R_13715001 RAL-223 1187 chr2R 13721167 13721224 chr2R 13721287 13721357 27 130 11.0 8.5 9.8 2.5 190 chr2R 13721167 intron fas + chr2R 13721262 intron fas + chr2R 13721357 intron fas + chr2R_27_13720001 chr2R_13720001 RAL-223 1188 chr2R 13728086 13728156 chr2R 13735793 13735863 opus 20 7704 10.0 9.5 9.8 1.9 7777 chr2R 13728086 intron fas + chr2R 13731974 intron fas + chr2R 13735863 intron fas + chr2R_20_13730001 chr2R_13730001 RAL-223 1189 chr2R 13768946 13769002 chr2R 13769090 13769151 25 148 6.5 8.5 7.5 2.9 205 chr2R 13768946 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769151 intergenic not near genes chr2R_25_13765001 chr2R_13765001 RAL-223 1190 chr2R 13790276 13790298 chr2R 13790402 13790423 9 125 21.0 2.0 11.5 0.7 147 chr2R 13790276 intergenic not near genes chr2R 13790350 intergenic not near genes chr2R 13790423 intergenic not near genes chr2R_9_13790001 chr2R_13790001 RAL-223 1191 chr2R 13805309 13805312 chr2R 13805617 13805620 4 308 0.5 13.0 6.8 0.5 311 chr2R 13805309 intergenic Cpr50Cb +,stj + chr2R 13805464 intergenic Cpr50Cb +,stj + chr2R 13805620 intergenic stj +,Cpr50Cb + chr2R_4_13805001 chr2R_13805001 RAL-223 1192 chr2R 13805313 13805367 chr2R 13805606 13805676 21 306 0.0 10.5 5.2 3.4 363 chr2R 13805313 intergenic Cpr50Cb +,stj + chr2R 13805494 intergenic Cpr50Cb +,stj + chr2R 13805676 intergenic stj +,Cpr50Cb + chr2R_21_13805001 chr2R_13805001 RAL-223 1193 chr2R 13905565 13905629 chr2R 13907597 13907639 Rt1a 19 2028 8.0 10.0 9.0 1.9 2074 chr2R 13905565 intron shot - chr2R 13906602 intron shot - chr2R 13907639 intron shot - chr2R_19_13905001 chr2R_13905001 RAL-223 1194 chr2R 13925852 13925893 chr2R 13926038 13926079 9 186 12.0 7.5 9.8 0.8 227 chr2R 13925852 intron shot - chr2R 13925966 intron shot - chr2R 13926079 intron shot - chr2R_9_13925001 chr2R_13925001 RAL-223 1195 chr2R 13958220 13958287 chr2R 13958383 13958450 36 161 8.0 9.0 8.5 3.8 230 chr2R 13958220 intergenic AGO1 -,Rpn13 - chr2R 13958335 intergenic Rpn13 -,AGO1 - chr2R 13958450 intergenic Rpn13 -,AGO1 - chr2R_36_13955001 chr2R_13955001 RAL-223 1196 chr2R 14018129 14018180 chr2R 14018263 14018314 18 134 1.5 10.5 6.0 2.6 185 chr2R 14018129 intron mam + chr2R 14018222 intron mam + chr2R 14018314 intron mam + chr2R_18_14015001 chr2R_14015001 RAL-223 1197 chr2R 14037235 14037282 chr2R 14037368 14037415 6 133 5.0 12.5 8.8 0.6 180 chr2R 14037235 intron mam + chr2R 14037325 intron mam + chr2R 14037415 intron mam + chr2R_6_14035001 chr2R_14035001 RAL-223 1198 chr2R 14050814 14050854 chr2R 14050951 14050958 10 128 7.5 16.0 11.8 0.8 144 chr2R 14050814 intron mam + chr2R 14050886 intron mam + chr2R 14050958 intron mam + chr2R_10_14050001 chr2R_14050001 RAL-223 1199 chr2R 14141909 14141950 chr2R 14142064 14142105 13 155 11.5 12.0 11.8 1.0 196 chr2R 14141909 intergenic not near genes chr2R 14142007 intergenic not near genes chr2R 14142105 intergenic not near genes chr2R_13_14140001 chr2R_14140001 RAL-223 1200 chr2R 14142395 14142472 chr2R 14142535 14142612 29 140 7.0 7.5 7.2 3.5 217 chr2R 14142395 intergenic not near genes chr2R 14142504 intergenic not near genes chr2R 14142612 intergenic not near genes chr2R_29_14140001 chr2R_14140001 RAL-223 1201 chr2R 14168320 14168391 chr2R 14168459 14168530 29 139 8.0 9.0 8.5 3.1 210 chr2R 14168320 intergenic CG18327 +,CG18324 + chr2R 14168425 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168530 intergenic CG18324 +,CG18327 +,CR44368 - chr2R_29_14165001 chr2R_14165001 RAL-223 1202 chr2R 14204023 14204057 chr2R 14204205 14204239 13 182 14.5 8.5 11.5 1.0 216 chr2R 14204023 exon Sox15 - chr2R 14204131 intron Sox15 - chr2R 14204239 intron Sox15 - chr2R_13_14200001 chr2R_14200001 RAL-223 1203 chr2R 14283401 14283442 chr2R 14283921 14283947 19 517 4.0 12.5 8.2 2.1 546 chr2R 14283401 intron Ih + chr2R 14283674 intron Ih + chr2R 14283947 intron Ih + chr2R_19_14280001 chr2R_14280001 RAL-223 1204 chr2R 14284995 14285051 chr2R 14285140 14285153 15 144 9.5 6.0 7.8 1.7 158 chr2R 14284995 intron Ih + chr2R 14285074 intron Ih + chr2R 14285153 intron Ih + chr2R_15_14285001 chr2R_14285001 RAL-223 1205 chr2R 14357511 14357577 chr2R 14357651 14357717 24 140 6.5 6.0 6.2 3.3 206 chr2R 14357511 intergenic CG8617 -,Arc1 - chr2R 14357614 intergenic Arc1 -,CG8617 - chr2R 14357717 intergenic Arc1 -,CG8617 - chr2R_24_14355001 chr2R_14355001 RAL-223 1206 chr2R 14393822 14393895 chr2R 14393957 14394013 21 134 10.0 9.0 9.5 2.0 191 chr2R 14393822 intergenic not near genes chr2R 14393918 intergenic not near genes chr2R 14394013 intergenic not near genes chr2R_21_14390001 chr2R_14390001 RAL-223 1207 chr2R 14394189 14394258 chr2R 14399028 14399097 Doc 6 4839 13.0 5.5 9.2 0.6 4908 chr2R 14394189 intergenic not near genes chr2R 14396643 intergenic not near genes chr2R 14399097 intergenic not near genes chr2R_6_14395001 chr2R_14395001 RAL-223 1208 chr2R 14457438 14457449 chr2R 14457557 14457575 8 124 0.0 4.0 2.0 2.7 137 chr2R 14457438 intron Oaz + chr2R 14457506 intron Oaz + chr2R 14457575 intron Oaz + chr2R_8_14455001 chr2R_14455001 RAL-223 1209 chr2R 14467252 14467317 chr2R 14476443 14476518 roo 22 9200 2.0 7.5 4.8 3.8 9266 chr2R 14467252 intergenic not near genes chr2R 14471885 intergenic not near genes chr2R 14476518 5` UTR CR44462 + chr2R_22_14470001 chr2R_14470001 RAL-223 1210 chr2R 14497363 14497422 chr2R 14498590 14498649 1360 32 1227 5.5 11.0 8.2 3.5 1286 chr2R 14497363 3` UTR Cpsf160 - chr2R 14498006 intron Cpsf160 - chr2R 14498649 3` UTR Cpsf160 - chr2R_32_14495001 chr2R_14495001 RAL-223 1211 chr2R 14514432 14514499 chr2R 14514578 14514641 15 144 8.5 8.0 8.2 1.6 209 chr2R 14514432 intron,exon Cpr51A -,CG30197 + chr2R 14514536 intron,intron Cpr51A -,CG30197 + chr2R 14514641 intron,intron Cpr51A -,CG30197 + chr2R_15_14510001 chr2R_14510001 RAL-223 1212 chr2R 14623818 14623900 chr2R 14623964 14624046 14 146 4.0 8.0 6.0 2.0 228 chr2R 14623818 intron,5` UTR Uhg5 +,snoRNA:Me28S-G2703b + chr2R 14623932 5` UTR Uhg5 + chr2R 14624046 intron,5` UTR Uhg5 +,snoRNA:Me28S-G2703c + chr2R_14_14620001 chr2R_14620001 RAL-223 1213 chr2R 14661104 14661135 chr2R 14661240 14661255 11 134 7.5 7.5 7.5 1.3 151 chr2R 14661104 intergenic not near genes chr2R 14661180 intergenic not near genes chr2R 14661255 intergenic not near genes chr2R_11_14660001 chr2R_14660001 RAL-223 1214 chr2R 14674820 14674853 chr2R 14674915 14674934 6 108 4.5 12.0 8.2 0.7 114 chr2R 14674820 intron,exon,3` UTR mspo -,CG30479 -,CG30480 - chr2R 14674877 intron,exon,3` UTR mspo -,CG30479 -,CG30480 - chr2R 14674934 intron,exon,3` UTR mspo -,CG30479 -,CG30480 - chr2R_6_14670001 chr2R_14670001 RAL-223 1215 chr2R 14680259 14680321 chr2R 14680430 14680492 17 171 6.5 0.0 3.2 4.0 233 chr2R 14680259 intron mspo - chr2R 14680376 intron mspo - chr2R 14680492 intron mspo - chr2R_17_14680001 chr2R_14680001 RAL-223 1216 chr2R 14722265 14722297 chr2R 14722419 14722450 14 154 0.5 18.0 9.2 1.4 185 chr2R 14722265 intergenic not near genes chr2R 14722358 intergenic not near genes chr2R 14722450 intergenic not near genes chr2R_14_14720001 chr2R_14720001 RAL-223 1217 chr2R 14737580 14737638 chr2R 14737714 14737743 17 127 8.0 11.5 9.8 1.6 163 chr2R 14737580 3` UTR CR43428 - chr2R 14737662 3` UTR CR43428 - chr2R 14737743 3` UTR CR43428 - chr2R_17_14735001 chr2R_14735001 RAL-223 1218 chr2R 14785980 14786053 chr2R 14786122 14786196 9 143 0.0 6.0 3.0 2.2 216 chr2R 14785980 intron kn - chr2R 14786088 intron kn - chr2R 14786196 intron kn - chr2R_9_14785001 chr2R_14785001 RAL-223 1219 chr2R 14796413 14796549 chr2R 14796546 14796680 6 131 0.0 0.0 0.0 6.0 267 chr2R 14796413 intron kn - chr2R 14796546 intron kn - chr2R 14796680 intron kn - chr2R_6_14795001 chr2R_14795001 RAL-223 1220 chr2R 14799867 14799881 chr2R 14799993 14800007 6 126 1.0 16.5 8.8 0.6 140 chr2R 14799867 intron kn - chr2R 14799937 intron kn - chr2R 14800007 intron kn - chr2R_6_14795001 chr2R_14795001 RAL-223 1221 chr2R 14803428 14803504 chr2R 14803558 14803634 12 130 2.5 9.5 6.0 1.7 206 chr2R 14803428 intron kn - chr2R 14803531 intron kn - chr2R 14803634 intron kn - chr2R_12_14800001 chr2R_14800001 RAL-223 1222 chr2R 14826349 14826384 chr2R 14826503 14826538 12 153 6.5 3.5 5.0 2.0 189 chr2R 14826349 intergenic not near genes chr2R 14826444 intergenic not near genes chr2R 14826538 intergenic not near genes chr2R_12_14825001 chr2R_14825001 RAL-223 1223 chr2R 14854989 14855015 chr2R 14855131 14855157 8 140 17.0 0.0 8.5 0.8 168 chr2R 14854989 5` UTR Ciao1 - chr2R 14855073 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_8_14855001 chr2R_14855001 RAL-223 1224 chr2R 14889170 14889242 chr2R 14897828 14897892 Max-element 20 8653 8.0 0.0 4.0 4.0 8722 chr2R 14889170 intergenic Cyp6a8 - chr2R 14893531 intergenic not near genes chr2R 14897892 intergenic not near genes chr2R_20_14890001 chr2R_14890001 RAL-223 1225 chr2R 14911654 14911719 chr2R 14911827 14911892 26 172 7.5 7.5 7.5 3.1 238 chr2R 14911654 intron CG10249 - chr2R 14911773 intron CG10249 - chr2R 14911892 intron CG10249 - chr2R_26_14910001 chr2R_14910001 RAL-223 1226 chr2R 14913629 14913674 chr2R 14913788 14913834 15 160 0.0 2.5 1.2 6.8 205 chr2R 14913629 intron CG10249 - chr2R 14913732 intron CG10249 - chr2R 14913834 intron CG10249 - chr2R_15_14910001 chr2R_14910001 RAL-223 1227 chr2R 14914275 14914338 chr2R 14914442 14914480 17 156 8.0 1.5 4.8 2.9 205 chr2R 14914275 intron CG10249 - chr2R 14914378 intron CG10249 - chr2R 14914480 intron CG10249 - chr2R_17_14910001 chr2R_14910001 RAL-223 1228 chr2R 14919036 14919108 chr2R 14919172 14919244 13 136 8.0 4.0 6.0 1.9 208 chr2R 14919036 intron CG10249 - chr2R 14919140 intron CG10249 - chr2R 14919244 intron CG10249 - chr2R_13_14915001 chr2R_14915001 RAL-223 1229 chr2R 14922098 14922169 chr2R 14922224 14922380 22 202 9.0 0.0 4.5 4.0 282 chr2R 14922098 intron CG10249 - chr2R 14922239 intron CG10249 - chr2R 14922380 intron CG10249 - chr2R_22_14920001 chr2R_14920001 RAL-223 1230 chr2R 14955624 14955699 chr2R 14955763 14955838 16 139 6.0 6.5 6.2 2.2 214 chr2R 14955624 intron aPKC - chr2R 14955731 intron aPKC - chr2R 14955838 intron aPKC - chr2R_16_14955001 chr2R_14955001 RAL-223 1231 chr2R 14968042 14968079 chr2R 14968170 14968207 16 128 0.0 5.0 2.5 4.6 165 chr2R 14968042 intron ckn + chr2R 14968124 intron ckn + chr2R 14968207 intron ckn + chr2R_16_14965001 chr2R_14965001 RAL-223 1232 chr2R 14968395 14968409 chr2R 14968527 14968541 5 132 14.5 7.0 10.8 0.4 146 chr2R 14968395 intron ckn + chr2R 14968468 intron ckn + chr2R 14968541 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-223 1233 chr2R 14968410 14968452 chr2R 14968525 14968567 15 128 10.0 7.0 8.5 1.6 157 chr2R 14968410 intron ckn + chr2R 14968488 intron ckn + chr2R 14968567 intron ckn + chr2R_15_14965001 chr2R_14965001 RAL-223 1234 chr2R 15004682 15004750 chr2R 15005061 15005129 jockey 28 379 9.0 5.5 7.2 3.4 447 chr2R 15004682 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005129 intergenic not near genes chr2R_28_15000001 chr2R_15000001 RAL-223 1235 chr2R 15015415 15015484 chr2R 15022889 15022958 mdg1 37 7474 9.0 0.5 4.8 6.4 7543 chr2R 15015415 intron hbs + chr2R 15019186 intron hbs + chr2R 15022958 intron hbs + chr2R_37_15015001 chr2R_15015001 RAL-223 1236 chr2R 15051033 15051105 chr2R 15051165 15051237 30 132 6.0 5.0 5.5 4.6 204 chr2R 15051033 intergenic not near genes chr2R 15051135 intergenic not near genes chr2R 15051237 intergenic not near genes chr2R_30_15050001 chr2R_15050001 RAL-223 1237 chr2R 15065596 15065644 chr2R 15065696 15065772 19 124 5.5 5.5 5.5 2.9 176 chr2R 15065596 intergenic not near genes chr2R 15065684 intergenic not near genes chr2R 15065772 intergenic not near genes chr2R_19_15065001 chr2R_15065001 RAL-223 1238 chr2R 15084933 15085002 chr2R 15092032 15092100 297 16 7098 7.5 6.0 6.8 2.1 7167 chr2R 15084933 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092100 5` UTR CR44457 + chr2R_16_15085001 chr2R_15085001 RAL-223 1239 chr2R 15119272 15119344 chr2R 15127803 15127875 Tirant 20 8530 6.5 7.5 7.0 2.5 8603 chr2R 15119272 intron chn + chr2R 15123574 intron chn + chr2R 15127875 intron chn + chr2R_20_15120001 chr2R_15120001 RAL-223 1240 chr2R 15163524 15163540 chr2R 15163662 15163678 9 137 9.5 21.0 15.2 0.6 154 chr2R 15163524 intron igl + chr2R 15163601 intron igl + chr2R 15163678 intron igl + chr2R_9_15160001 chr2R_15160001 RAL-223 1241 chr2R 15201181 15201258 chr2R 15201322 15201399 29 141 6.0 7.5 6.8 3.7 218 chr2R 15201181 5` UTR GPHR - chr2R 15201290 5` UTR CG11807 + chr2R 15201399 intron CG11807 + chr2R_29_15200001 chr2R_15200001 RAL-223 1242 chr2R 15230353 15230359 chr2R 15231008 15231014 4 655 36.5 0.0 18.2 0.2 661 chr2R 15230353 intron,5` UTR Fs -,CR44370 + chr2R 15230684 intron,5` UTR Fs -,CR44370 + chr2R 15231014 intron,5` UTR Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-223 1243 chr2R 15295823 15296115 chr2R 15296005 15296248 29 188 16.5 4.0 10.2 2.6 425 chr2R 15295823 intron Trpm - chr2R 15296036 intron Trpm - chr2R 15296248 intron Trpm - chr2R_29_15295001 chr2R_15295001 RAL-223 1244 chr2R 15296126 15296171 chr2R 15296253 15296304 33 132 10.0 11.5 10.8 2.8 178 chr2R 15296126 intron Trpm - chr2R 15296215 intron Trpm - chr2R 15296304 intron Trpm - chr2R_33_15295001 chr2R_15295001 RAL-223 1245 chr2R 15330166 15330225 chr2R 15330350 15330409 17 184 0.5 7.5 4.0 3.4 243 chr2R 15330166 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330409 3` UTR CR44371 - chr2R_17_15330001 chr2R_15330001 RAL-223 1246 chr2R 15340647 15340664 chr2R 15349280 15349297 Tirant 6 8633 22.0 8.5 15.2 0.4 8650 chr2R 15340647 intron unc-5 + chr2R 15344972 intron unc-5 + chr2R 15349297 intron unc-5 + chr2R_6_15340001 chr2R_15340001 RAL-223 1247 chr2R 15374795 15375045 chr2R 15374928 15375205 9 157 10.0 7.5 8.8 0.9 410 chr2R 15374795 intergenic not near genes chr2R 15375000 intergenic not near genes chr2R 15375205 intergenic not near genes chr2R_9_15370001 chr2R_15370001 RAL-223 1248 chr2R 15410729 15410800 chr2R 15410971 15411042 31 242 5.0 6.5 5.8 4.6 313 chr2R 15410729 intron CG43729 + chr2R 15410886 intron CG43729 + chr2R 15411042 intron CG43729 + chr2R_31_15410001 chr2R_15410001 RAL-223 1249 chr2R 15425254 15425285 chr2R 15425363 15425383 5 107 12.0 13.5 12.8 0.4 129 chr2R 15425254 intron CG43729 + chr2R 15425318 intron CG43729 + chr2R 15425383 intron CG43729 + chr2R_5_15425001 chr2R_15425001 RAL-223 1250 chr2R 15445180 15445238 chr2R 15445340 15445414 18 175 4.5 6.5 5.5 2.8 234 chr2R 15445180 intron CG43729 + chr2R 15445297 intron CG43729 + chr2R 15445414 intron CG43729 + chr2R_18_15445001 chr2R_15445001 RAL-223 1251 chr2R 15450940 15451005 chr2R 15451085 15451150 23 140 8.0 8.0 8.0 2.6 210 chr2R 15450940 intron CG43729 + chr2R 15451045 intron CG43729 + chr2R 15451150 intron CG43729 + chr2R_23_15450001 chr2R_15450001 RAL-223 1252 chr2R 15472024 15472055 chr2R 15472153 15472189 7 132 0.0 10.0 5.0 1.2 165 chr2R 15472024 intergenic CG43729 +,CG8180 - chr2R 15472106 intergenic CG8180 -,CG43729 + chr2R 15472189 3` UTR CG8180 - chr2R_7_15470001 chr2R_15470001 RAL-223 1253 chr2R 15534630 15534696 chr2R 15534759 15534823 23 128 10.5 9.0 9.8 2.1 193 chr2R 15534630 intron CG30471 + chr2R 15534726 intron CG30471 + chr2R 15534823 intron CG30471 + chr2R_23_15530001 chr2R_15530001 RAL-223 1254 chr2R 15606084 15606123 chr2R 15606211 15606250 14 127 9.5 7.0 8.2 1.5 166 chr2R 15606084 intergenic not near genes chr2R 15606167 intergenic not near genes chr2R 15606250 intergenic not near genes chr2R_14_15605001 chr2R_15605001 RAL-223 1255 chr2R 15637297 15637366 chr2R 15637432 15637501 28 134 9.0 11.5 10.2 2.5 204 chr2R 15637297 intron CG42524 + chr2R 15637399 intron CG42524 + chr2R 15637501 intron CG42524 + chr2R_28_15635001 chr2R_15635001 RAL-223 1256 chr2R 15645629 15645636 chr2R 15645775 15645782 6 146 0.5 0.0 0.2 5.0 153 chr2R 15645629 intron CG42524 + chr2R 15645706 intron CG42524 + chr2R 15645782 intron CG42524 + chr2R_6_15645001 chr2R_15645001 RAL-223 1257 chr2R 15645637 15645696 chr2R 15645773 15645843 14 140 0.0 0.0 0.0 14.0 206 chr2R 15645637 intron CG42524 + chr2R 15645740 intron CG42524 + chr2R 15645843 intron CG42524 + chr2R_14_15645001 chr2R_15645001 RAL-223 1258 chr2R 15652539 15652581 chr2R 15652667 15652723 19 140 18.5 16.5 17.5 1.0 184 chr2R 15652539 intron CG42524 + chr2R 15652631 intron CG42524 + chr2R 15652723 intron CG42524 + chr2R_19_15650001 chr2R_15650001 RAL-223 1259 chr2R 15655981 15656063 chr2R 15656122 15656204 14 141 0.0 6.5 3.2 3.3 223 chr2R 15655981 intron CG42524 + chr2R 15656092 intron CG42524 + chr2R 15656204 intron CG42524 + chr2R_14_15655001 chr2R_15655001 RAL-223 1260 chr2R 15704270 15704300 chr2R 15704725 15704755 10 454 16.5 10.0 13.2 0.7 485 chr2R 15704270 intergenic not near genes chr2R 15704512 intergenic not near genes chr2R 15704755 intergenic not near genes chr2R_10_15700001 chr2R_15700001 RAL-223 1261 chr2R 15704302 15704321 chr2R 15704717 15704776 9 449 12.0 8.0 10.0 0.8 474 chr2R 15704302 intergenic not near genes chr2R 15704539 intergenic not near genes chr2R 15704776 intergenic not near genes chr2R_9_15700001 chr2R_15700001 RAL-223 1262 chr2R 15712654 15712726 chr2R 15712790 15712862 22 136 8.0 7.5 7.8 2.5 208 chr2R 15712654 intergenic CG30083 - chr2R 15712758 intergenic CG30083 - chr2R 15712862 intergenic CG30083 - chr2R_22_15710001 chr2R_15710001 RAL-223 1263 chr2R 15721820 15721895 chr2R 15721946 15721999 18 115 5.0 8.0 6.5 2.4 179 chr2R 15721820 intergenic not near genes chr2R 15721910 intergenic not near genes chr2R 15721999 intergenic not near genes chr2R_18_15720001 chr2R_15720001 RAL-223 1264 chr2R 15740440 15740509 chr2R 15740568 15740637 18 126 8.0 10.5 9.2 1.8 197 chr2R 15740440 intron CG30089 + chr2R 15740538 intron CG30089 + chr2R 15740637 intron CG30089 + chr2R_18_15740001 chr2R_15740001 RAL-223 1265 chr2R 15794805 15794898 chr2R 15794959 15795038 8 144 0.0 0.0 0.0 8.0 233 chr2R 15794805 intron,5` UTR Zasp52 -,tun + chr2R 15794922 intron,5` UTR Zasp52 -,tun + chr2R 15795038 intron,intron Zasp52 -,tun + chr2R_8_15790001 chr2R_15790001 RAL-223 1266 chr2R 15813597 15813665 chr2R 15813763 15813831 32 164 8.0 9.0 8.5 3.4 234 chr2R 15813597 intron,intron Zasp52 -,tun + chr2R 15813714 intron,intron Zasp52 -,tun + chr2R 15813831 intron,intron Zasp52 -,tun + chr2R_32_15810001 chr2R_15810001 RAL-223 1267 chr2R 16054904 16054962 chr2R 16055037 16055093 16 132 7.5 9.5 8.5 1.7 189 chr2R 16054904 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055093 intron CG8405 + chr2R_16_16050001 chr2R_16050001 RAL-223 1268 chr2R 16093544 16093598 chr2R 16093681 16093735 22 137 5.5 11.0 8.2 2.4 191 chr2R 16093544 intron Dg - chr2R 16093640 intron Dg - chr2R 16093735 intron Dg - chr2R_22_16090001 chr2R_16090001 RAL-223 1269 chr2R 16096140 16096192 chr2R 16096271 16096323 17 130 0.0 3.5 1.8 6.1 183 chr2R 16096140 intron Dg - chr2R 16096232 intron Dg - chr2R 16096323 intron Dg - chr2R_17_16095001 chr2R_16095001 RAL-223 1270 chr2R 16119844 16119915 chr2R 16120018 16120089 35 174 8.5 11.5 10.0 3.2 245 chr2R 16119844 5` UTR Jhe + chr2R 16119966 intron Jhe + chr2R 16120089 intron Jhe + chr2R_35_16115001 chr2R_16115001 RAL-223 1271 chr2R 16245588 16245661 chr2R 16245726 16245799 18 138 6.0 5.5 5.8 2.6 211 chr2R 16245588 intron CngA - chr2R 16245694 intron CngA - chr2R 16245799 intron CngA - chr2R_18_16245001 chr2R_16245001 RAL-223 1272 chr2R 16279366 16279400 chr2R 16279501 16279535 8 135 0.0 19.0 9.5 0.8 169 chr2R 16279366 intergenic not near genes chr2R 16279450 intergenic not near genes chr2R 16279535 intergenic CG15704 + chr2R_8_16275001 chr2R_16275001 RAL-223 1273 chr2R 16352796 16352866 chr2R 16352926 16352999 12 133 6.5 2.5 4.5 2.2 203 chr2R 16352796 intergenic not near genes chr2R 16352898 intergenic not near genes chr2R 16352999 intergenic not near genes chr2R_12_16350001 chr2R_16350001 RAL-223 1274 chr2R 16374529 16374602 chr2R 16374664 16374736 12 134 0.0 6.0 3.0 3.0 207 chr2R 16374529 intergenic not near genes chr2R 16374632 intergenic not near genes chr2R 16374736 intergenic not near genes chr2R_12_16370001 chr2R_16370001 RAL-223 1275 chr2R 16520531 16520603 chr2R 16520732 16520805 19 200 5.0 7.5 6.2 2.6 274 chr2R 16520531 intron Sema-2a + chr2R 16520668 intron Sema-2a + chr2R 16520805 intron Sema-2a + chr2R_19_16520001 chr2R_16520001 RAL-223 1276 chr2R 16539589 16539613 chr2R 16544845 16544869 copia 11 5256 12.5 0.0 6.2 1.5 5280 chr2R 16539589 intergenic not near genes chr2R 16542229 intergenic not near genes chr2R 16544869 intergenic not near genes chr2R_11_16540001 chr2R_16540001 RAL-223 1277 chr2R 16544845 16544850 chr2R 16544980 16544985 4 135 0.0 0.0 0.0 4.0 140 chr2R 16544845 intergenic not near genes chr2R 16544915 intergenic not near genes chr2R 16544985 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-223 1278 chr2R 16571828 16571895 chr2R 16571973 16572040 26 145 7.5 8.0 7.8 3.0 212 chr2R 16571828 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16572040 intergenic CG4927 + chr2R_26_16570001 chr2R_16570001 RAL-223 1279 chr2R 16713055 16713066 chr2R 16713188 16713199 6 133 0.0 19.0 9.5 0.6 144 chr2R 16713055 intron CG30463 - chr2R 16713127 intron CG30463 - chr2R 16713199 intron CG30463 - chr2R_6_16710001 chr2R_16710001 RAL-223 1280 chr2R 16739434 16739445 chr2R 16739567 16739578 7 133 12.5 0.0 6.2 1.0 144 chr2R 16739434 intergenic not near genes chr2R 16739506 intergenic not near genes chr2R 16739578 intergenic not near genes chr2R_7_16735001 chr2R_16735001 RAL-223 1281 chr2R 16775610 16775672 chr2R 16775927 16775989 20 317 5.0 10.0 7.5 2.4 379 chr2R 16775610 3` UTR Arp53D + chr2R 16775800 intergenic Arp53D + chr2R 16775989 intergenic Arp53D + chr2R_20_16775001 chr2R_16775001 RAL-223 1282 chr2R 16887993 16887999 chr2R 16888121 16888122 4 126 22.0 0.5 11.2 0.3 129 chr2R 16887993 intron CG8910 - chr2R 16888058 intron CG8910 - chr2R 16888122 intron CG8910 - chr2R_4_16885001 chr2R_16885001 RAL-223 1283 chr2R 16888001 16888048 chr2R 16888120 16888176 20 127 11.0 0.5 5.8 2.9 175 chr2R 16888001 intron CG8910 - chr2R 16888088 intron CG8910 - chr2R 16888176 intron CG8910 - chr2R_20_16885001 chr2R_16885001 RAL-223 1284 chr2R 16971445 16971514 chr2R 16971752 16971820 9 307 5.0 3.0 4.0 1.8 375 chr2R 16971445 5` UTR CR44377 + chr2R 16971632 5` UTR CR44377 + chr2R 16971820 intergenic CR44377 + chr2R_9_16970001 chr2R_16970001 RAL-223 1285 chr2R 16975154 16975221 chr2R 16975281 16975348 22 127 5.5 7.0 6.2 3.1 194 chr2R 16975154 intron Cbp53E + chr2R 16975251 intron Cbp53E + chr2R 16975348 intron Cbp53E + chr2R_22_16975001 chr2R_16975001 RAL-223 1286 chr2R 16984108 16984176 chr2R 16985347 16985415 23 1235 36.0 32.0 34.0 0.7 1307 chr2R 16984108 intron Cbp53E + chr2R 16984762 exon Cbp53E + chr2R 16985415 intron Cbp53E + chr2R_23_16980001 chr2R_16980001 RAL-223 1287 chr2R 16983442 16983506 chr2R 16985411 16985475 19 1969 52.5 44.5 48.5 0.4 2033 chr2R 16983442 intron Cbp53E + chr2R 16984458 exon Cbp53E + chr2R 16985475 intron Cbp53E + chr2R_19_16980001 chr2R_16980001 RAL-223 1288 chr2R 17090686 17090749 chr2R 17090820 17090888 32 138 8.0 10.0 9.0 3.2 202 chr2R 17090686 intron Sply - chr2R 17090787 intron Sply - chr2R 17090888 intron Sply - chr2R_32_17090001 chr2R_17090001 RAL-223 1289 chr2R 17098616 17098656 chr2R 17098755 17098795 11 137 17.5 17.0 17.2 0.6 179 chr2R 17098616 intergenic GstS1 - chr2R 17098706 intergenic GstS1 - chr2R 17098795 intergenic GstS1 - chr2R_11_17095001 chr2R_17095001 RAL-223 1290 chr2R 17101069 17101125 chr2R 17101203 17101259 8 133 0.0 9.5 4.8 1.4 190 chr2R 17101069 intron CG30456 + chr2R 17101164 intron CG30456 + chr2R 17101259 intron CG30456 + chr2R_8_17100001 chr2R_17100001 RAL-223 1291 chr2R 17112432 17112505 chr2R 17112594 17112667 23 162 8.0 4.5 6.2 3.2 235 chr2R 17112432 intron CG15611 + chr2R 17112550 intron CG15611 + chr2R 17112667 intron CG15611 + chr2R_23_17110001 chr2R_17110001 RAL-223 1292 chr2R 17132805 17132868 chr2R 17132955 17133018 23 150 9.0 8.5 8.8 2.3 213 chr2R 17132805 intergenic not near genes chr2R 17132912 intergenic not near genes chr2R 17133018 intergenic Acp54A1 + chr2R_23_17130001 chr2R_17130001 RAL-223 1293 chr2R 17147196 17147256 chr2R 17152277 17152337 jockey 19 5080 10.5 7.0 8.8 1.9 5141 chr2R 17147196 intergenic not near genes chr2R 17149766 intergenic not near genes chr2R 17152337 intergenic not near genes chr2R_19_17145001 chr2R_17145001 RAL-223 1294 chr2R 17161124 17161193 chr2R 17161259 17161328 25 135 5.5 7.5 6.5 3.3 204 chr2R 17161124 intergenic CG30457 - chr2R 17161226 intergenic CG30457 - chr2R 17161328 intergenic CG30457 - chr2R_25_17160001 chr2R_17160001 RAL-223 1295 chr2R 17165966 17165987 chr2R 17166111 17166132 4 145 20.5 15.0 17.8 0.2 166 chr2R 17165966 exon CG10953 - chr2R 17166049 exon CG10953 - chr2R 17166132 exon CG10953 - chr2R_4_17165001 chr2R_17165001 RAL-223 1296 chr2R 17183405 17183460 chr2R 17183533 17183603 22 138 8.5 0.0 4.2 4.2 198 chr2R 17183405 intergenic not near genes chr2R 17183504 intergenic not near genes chr2R 17183603 intergenic not near genes chr2R_22_17180001 chr2R_17180001 RAL-223 1297 chr2R 17236462 17236530 chr2R 17241716 17241784 copia 23 5253 9.5 8.0 8.8 2.3 5322 chr2R 17236462 intron mbl + chr2R 17239123 intron mbl + chr2R 17241784 intron mbl + chr2R_23_17235001 chr2R_17235001 RAL-223 1298 chr2R 17253492 17253560 chr2R 17253932 17254008 10 444 0.0 8.0 4.0 2.0 516 chr2R 17253492 intron mbl + chr2R 17253750 intron mbl + chr2R 17254008 intron,3` UTR mbl +,CR43660 - chr2R_10_17250001 chr2R_17250001 RAL-223 1299 chr2R 17329342 17329353 chr2R 17329462 17329476 4 131 13.5 7.0 10.2 0.4 134 chr2R 17329342 intron mbl + chr2R 17329409 intron mbl + chr2R 17329476 intron mbl + chr2R_4_17325001 chr2R_17325001 RAL-223 1300 chr2R 17329354 17329390 chr2R 17329454 17329505 13 129 7.5 6.0 6.8 1.7 151 chr2R 17329354 intron mbl + chr2R 17329430 intron mbl + chr2R 17329505 intron mbl + chr2R_13_17325001 chr2R_17325001 RAL-223 1301 chr2R 17330380 17330433 chr2R 17330530 17330583 26 149 6.5 5.5 6.0 3.7 203 chr2R 17330380 intron mbl + chr2R 17330482 intron mbl + chr2R 17330583 intron mbl + chr2R_26_17330001 chr2R_17330001 RAL-223 1302 chr2R 17343475 17343537 chr2R 17343601 17343663 31 123 9.0 7.0 8.0 3.4 188 chr2R 17343475 intron mbl + chr2R 17343569 intron mbl + chr2R 17343663 intron mbl + chr2R_31_17340001 chr2R_17340001 RAL-223 1303 chr2R 17381540 17381612 chr2R 17381678 17381732 27 136 6.0 8.5 7.2 3.3 192 chr2R 17381540 intergenic not near genes chr2R 17381636 intergenic not near genes chr2R 17381732 intergenic not near genes chr2R_27_17380001 chr2R_17380001 RAL-223 1304 chr2R 17397770 17397819 chr2R 17397911 17397960 14 141 5.5 10.5 8.0 1.6 190 chr2R 17397770 intron Sip1 + chr2R 17397865 intron Sip1 + chr2R 17397960 intron Sip1 + chr2R_14_17395001 chr2R_17395001 RAL-223 1305 chr2R 17419887 17419960 chr2R 17420021 17420088 15 134 0.0 10.0 5.0 2.5 201 chr2R 17419887 5` UTR cnk - chr2R 17419988 5` UTR cnk - chr2R 17420088 intergenic cnk -,l(2)k01209 + chr2R_15_17415001 chr2R_17415001 RAL-223 1306 chr2R 17458961 17459031 chr2R 17459096 17459166 27 135 11.5 11.0 11.2 2.2 205 chr2R 17458961 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459166 intron CG14478 + chr2R_27_17455001 chr2R_17455001 RAL-223 1307 chr2R 17470293 17470351 chr2R 17470428 17470485 14 134 6.5 0.0 3.2 3.3 192 chr2R 17470293 intron qkr54B + chr2R 17470389 intron qkr54B + chr2R 17470485 intron qkr54B + chr2R_14_17470001 chr2R_17470001 RAL-223 1308 chr2R 17485872 17485950 chr2R 17490692 17490768 F-element 26 4818 10.0 8.5 9.2 2.5 4896 chr2R 17485872 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488320 intron NT5E-2 + chr2R 17490768 intron NT5E-2 + chr2R_26_17485001 chr2R_17485001 RAL-223 1309 chr2R 17532223 17532241 chr2R 17532344 17532368 9 125 21.0 16.5 18.8 0.5 145 chr2R 17532223 intron Patronin - chr2R 17532296 intron Patronin - chr2R 17532368 intron Patronin - chr2R_9_17530001 chr2R_17530001 RAL-223 1310 chr2R 17626808 17626876 chr2R 17626936 17627004 24 128 5.5 0.0 2.8 6.3 196 chr2R 17626808 intron CG10936 - chr2R 17626906 intron CG10936 - chr2R 17627004 intron CG10936 - chr2R_24_17625001 chr2R_17625001 RAL-223 1311 chr2R 17679571 17679589 chr2R 17679748 17679766 4 177 4.0 0.0 2.0 1.3 195 chr2R 17679571 intron Sema-1b - chr2R 17679668 intron Sema-1b - chr2R 17679766 intron Sema-1b - chr2R_4_17675001 chr2R_17675001 RAL-223 1312 chr2R 17782317 17782387 chr2R 17783570 17783640 pogo 14 1253 7.0 0.0 3.5 3.1 1323 chr2R 17782317 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783640 intergenic mir-31a - chr2R_14_17780001 chr2R_17780001 RAL-223 1313 chr2R 17783978 17784053 chr2R 17784269 17784344 pogo 29 290 5.5 9.0 7.2 3.5 366 chr2R 17783978 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784344 intergenic mir-31a - chr2R_29_17780001 chr2R_17780001 RAL-223 1314 chr2R 17798375 17798407 chr2R 17798902 17798936 297 5 527 5.5 9.5 7.5 0.6 561 chr2R 17798375 intron Dhit + chr2R 17798656 intron Dhit + chr2R 17798936 intron Dhit + chr2R_5_17795001 chr2R_17795001 RAL-223 1315 chr2R 17849759 17849822 chr2R 17849966 17850029 24 207 0.0 6.5 3.2 5.7 270 chr2R 17849759 intron olf186-F + chr2R 17849894 intron olf186-F + chr2R 17850029 intron olf186-F + chr2R_24_17845001 chr2R_17845001 RAL-223 1316 chr2R 17852876 17852951 chr2R 17853017 17853092 32 141 9.0 10.5 9.8 3.0 216 chr2R 17852876 intron olf186-F + chr2R 17852984 intron olf186-F + chr2R 17853092 intron olf186-F + chr2R_32_17850001 chr2R_17850001 RAL-223 1317 chr2R 17898719 17898770 chr2R 17898858 17898908 12 138 1.5 10.5 6.0 1.7 189 chr2R 17898719 intron Elk + chr2R 17898814 intron Elk + chr2R 17898908 intron Elk + chr2R_12_17895001 chr2R_17895001 RAL-223 1318 chr2R 17933775 17933784 chr2R 17933905 17933914 4 130 0.0 5.5 2.8 1.1 139 chr2R 17933775 intergenic not near genes chr2R 17933844 intergenic not near genes chr2R 17933914 intergenic not near genes chr2R_4_17930001 chr2R_17930001 RAL-223 1319 chr2R 17963280 17963292 chr2R 17963463 17963475 8 183 20.5 9.5 15.0 0.5 195 chr2R 17963280 intergenic not near genes chr2R 17963378 intergenic not near genes chr2R 17963475 intergenic not near genes chr2R_8_17960001 chr2R_17960001 RAL-223 1320 chr2R 17966118 17966168 chr2R 17966240 17966299 12 128 5.5 6.0 5.8 1.8 181 chr2R 17966118 intergenic not near genes chr2R 17966208 intergenic not near genes chr2R 17966299 intergenic not near genes chr2R_12_17965001 chr2R_17965001 RAL-223 1321 chr2R 17982874 17982950 chr2R 17983009 17983085 38 135 11.0 5.0 8.0 4.2 211 chr2R 17982874 intron dpr13 - chr2R 17982980 intron dpr13 - chr2R 17983085 intron dpr13 - chr2R_38_17980001 chr2R_17980001 RAL-223 1322 chr2R 18009742 18009780 chr2R 18009868 18009906 13 125 11.0 7.0 9.0 1.3 164 chr2R 18009742 intergenic not near genes chr2R 18009824 intergenic not near genes chr2R 18009906 intergenic not near genes chr2R_13_18005001 chr2R_18005001 RAL-223 1323 chr2R 18009782 18009795 chr2R 18009867 18009921 4 114 8.0 6.5 7.2 0.5 139 chr2R 18009782 intergenic not near genes chr2R 18009852 intergenic not near genes chr2R 18009921 intergenic not near genes chr2R_4_18005001 chr2R_18005001 RAL-223 1324 chr2R 18021545 18021547 chr2R 18021967 18021977 9 416 4.0 0.0 2.0 3.0 432 chr2R 18021545 exon CG10910 + chr2R 18021761 exon CG10910 + chr2R 18021977 exon CG10910 + chr2R_9_18020001 chr2R_18020001 RAL-223 1325 chr2R 18026648 18026707 chr2R 18026775 18026824 17 124 14.0 6.5 10.2 1.5 176 chr2R 18026648 intergenic not near genes chr2R 18026736 intergenic not near genes chr2R 18026824 intergenic not near genes chr2R_17_18025001 chr2R_18025001 RAL-223 1326 chr2R 18042784 18042988 chr2R 18042943 18043130 4 150 0.0 0.0 0.0 4.0 346 chr2R 18042784 3` UTR CG5773 - chr2R 18042957 3` UTR CG5773 - chr2R 18043130 exon CG5773 - chr2R_4_18040001 chr2R_18040001 RAL-223 1327 chr2R 18045628 18045689 chr2R 18046030 18046091 jockey 24 402 11.5 10.5 11.0 2.0 463 chr2R 18045628 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046091 intergenic CG5767 - chr2R_24_18045001 chr2R_18045001 RAL-223 1328 chr2R 18111649 18111702 chr2R 18115567 18115620 F-element 15 3918 12.5 9.0 10.8 1.3 3971 chr2R 18111649 intergenic not near genes chr2R 18113634 intergenic not near genes chr2R 18115620 intergenic not near genes chr2R_15_18110001 chr2R_18110001 RAL-223 1329 chr2R 18124291 18124356 chr2R 18124418 18124483 24 125 10.5 8.5 9.5 2.3 192 chr2R 18124291 intron stau - chr2R 18124387 intron stau - chr2R 18124483 intron stau - chr2R_24_18120001 chr2R_18120001 RAL-223 1330 chr2R 18308234 18308316 chr2R 18308390 18308472 28 155 9.5 7.0 8.2 3.0 238 chr2R 18308234 intron sbb - chr2R 18308353 intron sbb - chr2R 18308472 intron sbb - chr2R_28_18305001 chr2R_18305001 RAL-223 1331 chr2R 18320031 18320075 chr2R 18320194 18320241 9 164 5.0 0.0 2.5 2.6 210 chr2R 18320031 intron sbb - chr2R 18320136 intron sbb - chr2R 18320241 intron sbb - chr2R_9_18320001 chr2R_18320001 RAL-223 1332 chr2R 18322146 18322208 chr2R 18322280 18322342 12 134 5.5 4.0 4.8 2.1 196 chr2R 18322146 intron sbb - chr2R 18322244 intron sbb - chr2R 18322342 intron sbb - chr2R_12_18320001 chr2R_18320001 RAL-223 1333 chr2R 18358345 18358423 chr2R 18372607 18372635 roo 22 14259 6.5 5.5 6.0 3.1 14290 chr2R 18358345 intergenic not near genes chr2R 18365490 intergenic not near genes chr2R 18372635 intergenic not near genes chr2R_22_18365001 chr2R_18365001 RAL-223 1334 chr2R 18401652 18401734 chr2R 18402406 18402488 19 754 49.5 63.0 56.2 0.3 836 chr2R 18401652 intergenic GstE3 + chr2R 18402070 intergenic not near genes chr2R 18402488 intergenic not near genes chr2R_19_18400001 chr2R_18400001 RAL-223 1335 chr2R 18405705 18405780 chr2R 18405836 18405910 12 130 7.0 6.0 6.5 1.6 205 chr2R 18405705 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405910 intergenic GstE6 + chr2R_12_18405001 chr2R_18405001 RAL-223 1336 chr2R 18405782 18405788 chr2R 18405912 18405918 4 130 8.5 20.5 14.5 0.3 136 chr2R 18405782 intergenic GstE6 +,GstE5 + chr2R 18405850 intergenic GstE6 + chr2R 18405918 intergenic GstE6 + chr2R_4_18405001 chr2R_18405001 RAL-223 1337 chr2R 18463648 18463687 chr2R 18463798 18463838 18 150 7.0 5.5 6.2 2.5 190 chr2R 18463648 intron CG30116 - chr2R 18463743 intron CG30116 - chr2R 18463838 intron CG30116 - chr2R_18_18460001 chr2R_18460001 RAL-223 1338 chr2R 18487788 18487827 chr2R 18495289 18495328 blood 15 7499 10.0 5.5 7.8 1.7 7540 chr2R 18487788 intron CG30116 - chr2R 18491558 intron CG30116 - chr2R 18495328 intron CG30116 - chr2R_15_18490001 chr2R_18490001 RAL-223 1339 chr2R 18528146 18528218 chr2R 18528279 18528347 30 134 8.0 7.0 7.5 3.5 201 chr2R 18528146 intron CG10924 + chr2R 18528246 intron CG10924 + chr2R 18528347 intron CG10924 + chr2R_30_18525001 chr2R_18525001 RAL-223 1340 chr2R 18575748 18575755 chr2R 18581986 18581993 3S18 6 6238 20.5 8.5 14.5 0.4 6245 chr2R 18575748 intron GEFmeso - chr2R 18578870 intron GEFmeso - chr2R 18581993 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-223 1341 chr2R 18575757 18575823 chr2R 18581984 18582061 3S18 20 6233 9.0 7.5 8.2 2.2 6304 chr2R 18575757 intron GEFmeso - chr2R 18578909 intron GEFmeso - chr2R 18582061 intron GEFmeso - chr2R_20_18575001 chr2R_18575001 RAL-223 1342 chr2R 18585766 18585810 chr2R 18585893 18585938 18 128 12.0 6.5 9.2 1.8 172 chr2R 18585766 intron GEFmeso - chr2R 18585852 intron GEFmeso - chr2R 18585938 intron GEFmeso - chr2R_18_18585001 chr2R_18585001 RAL-223 1343 chr2R 18590819 18590891 chr2R 18600021 18600093 roo 32 9201 7.5 7.5 7.5 3.8 9274 chr2R 18590819 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600093 intron GEFmeso - chr2R_32_18595001 chr2R_18595001 RAL-223 1344 chr2R 18692856 18692921 chr2R 18692993 18693057 20 137 6.5 2.5 4.5 3.6 201 chr2R 18692856 exon Sik3 + chr2R 18692956 intron Sik3 + chr2R 18693057 intron Sik3 + chr2R_20_18690001 chr2R_18690001 RAL-223 1345 chr2R 18732821 18732827 chr2R 18732952 18732958 4 131 0.0 4.5 2.2 1.2 137 chr2R 18732821 intron Hs3st-A + chr2R 18732890 intron Hs3st-A + chr2R 18732958 intron Hs3st-A + chr2R_4_18730001 chr2R_18730001 RAL-223 1346 chr2R 18769603 18769734 chr2R 18769914 18769991 14 296 0.0 6.0 3.0 3.5 388 chr2R 18769603 intron Mctp + chr2R 18769797 intron Mctp + chr2R 18769991 intron Mctp + chr2R_14_18765001 chr2R_18765001 RAL-223 1347 chr2R 18808019 18808085 chr2R 18808158 18808224 9 139 0.0 0.0 0.0 9.0 205 chr2R 18808019 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808224 intergenic CG15096 - chr2R_9_18805001 chr2R_18805001 RAL-223 1348 chr2R 18819010 18819025 chr2R 18819138 18819153 6 128 6.5 0.0 3.2 1.4 143 chr2R 18819010 intergenic Phb2 + chr2R 18819082 intergenic Phb2 + chr2R 18819153 intergenic Phb2 + chr2R_6_18815001 chr2R_18815001 RAL-223 1349 chr2R 18880308 18880381 chr2R 18880443 18880516 27 134 5.5 9.0 7.2 3.3 208 chr2R 18880308 intron sano + chr2R 18880412 intron sano + chr2R 18880516 intron sano + chr2R_27_18880001 chr2R_18880001 RAL-223 1350 chr2R 18926457 18926513 chr2R 18926594 18926650 21 137 8.0 0.0 4.0 4.2 193 chr2R 18926457 intron sano + chr2R 18926554 intron sano + chr2R 18926650 intron sano + chr2R_21_18925001 chr2R_18925001 RAL-223 1351 chr2R 18953114 18953180 chr2R 18953251 18953317 30 137 9.0 8.5 8.8 3.1 203 chr2R 18953114 intron sano + chr2R 18953216 intron sano + chr2R 18953317 intron sano + chr2R_30_18950001 chr2R_18950001 RAL-223 1352 chr2R 19015381 19015456 chr2R 19015519 19015594 21 136 5.5 6.0 5.8 3.1 213 chr2R 19015381 intergenic not near genes chr2R 19015488 intergenic not near genes chr2R 19015594 intergenic not near genes chr2R_21_19015001 chr2R_19015001 RAL-223 1353 chr2R 19026003 19026056 chr2R 19026154 19026201 17 151 4.5 6.5 5.5 2.6 198 chr2R 19026003 exon 5-HT1B - chr2R 19026102 intron 5-HT1B - chr2R 19026201 intron 5-HT1B - chr2R_17_19025001 chr2R_19025001 RAL-223 1354 chr2R 19065761 19065832 chr2R 19065894 19065948 26 128 10.5 9.5 10.0 2.4 187 chr2R 19065761 intergenic not near genes chr2R 19065854 intergenic not near genes chr2R 19065948 intergenic not near genes chr2R_26_19065001 chr2R_19065001 RAL-223 1355 chr2R 19076327 19076401 chr2R 19076485 19076557 18 155 5.5 8.0 6.8 2.3 230 chr2R 19076327 intron 5-HT1A + chr2R 19076442 intron 5-HT1A + chr2R 19076557 intron 5-HT1A + chr2R_18_19075001 chr2R_19075001 RAL-223 1356 chr2R 19103905 19103981 chr2R 19104117 19104193 17 211 8.0 5.5 6.8 2.2 288 chr2R 19103905 intron 5-HT1A + chr2R 19104049 intron 5-HT1A + chr2R 19104193 intron 5-HT1A + chr2R_17_19100001 chr2R_19100001 RAL-223 1357 chr2R 19168692 19168768 chr2R 19168822 19168901 20 132 7.0 6.0 6.5 2.7 209 chr2R 19168692 intron CG10737 + chr2R 19168796 intron CG10737 + chr2R 19168901 intron CG10737 + chr2R_20_19165001 chr2R_19165001 RAL-223 1358 chr2R 19283744 19283821 chr2R 19286760 19286837 37 3015 38.0 7.5 22.8 1.6 3093 chr2R 19283744 exon CG11906 - chr2R 19285290 intergenic CG10476 -,CG10474 - chr2R 19286837 intergenic CG10474 - chr2R_37_19285001 chr2R_19285001 RAL-223 1359 chr2R 19282931 19283009 chr2R 19285478 19285573 26 2551 51.0 13.0 32.0 0.8 2642 chr2R 19282931 exon CG11906 - chr2R 19284252 intergenic CG11906 -,CG10476 - chr2R 19285573 exon CG10474 - chr2R_26_19280001 chr2R_19280001 RAL-223 1360 chr2R 19352310 19352368 chr2R 19352433 19352487 16 128 6.5 10.0 8.2 1.7 177 chr2R 19352310 intron Rgk1 - chr2R 19352398 intron Rgk1 - chr2R 19352487 intron Rgk1 - chr2R_16_19350001 chr2R_19350001 RAL-223 1361 chr2R 19415327 19415337 chr2R 19415455 19415467 9 130 10.5 24.5 17.5 0.5 140 chr2R 19415327 intron hts - chr2R 19415397 intron hts - chr2R 19415467 intron hts - chr2R_9_19415001 chr2R_19415001 RAL-223 1362 chr2R 19522598 19522667 chr2R 19522727 19522796 20 129 7.0 6.5 6.8 2.6 198 chr2R 19522598 3` UTR sm - chr2R 19522697 3` UTR sm - chr2R 19522796 3` UTR sm - chr2R_20_19520001 chr2R_19520001 RAL-223 1363 chr2R 19575518 19575574 chr2R 19575646 19575702 25 127 9.5 5.5 7.5 2.9 184 chr2R 19575518 intron sm - chr2R 19575610 intron sm - chr2R 19575702 intron sm - chr2R_25_19575001 chr2R_19575001 RAL-223 1364 chr2R 19588705 19588776 chr2R 19588833 19588904 28 127 7.0 8.0 7.5 3.3 199 chr2R 19588705 intron sm - chr2R 19588804 intron sm - chr2R 19588904 intron sm - chr2R_28_19585001 chr2R_19585001 RAL-223 1365 chr2R 19701477 19701538 chr2R 19701611 19701672 13 134 4.5 4.5 4.5 2.4 195 chr2R 19701477 intergenic Obp56c - chr2R 19701574 intergenic Obp56c - chr2R 19701672 intergenic not near genes chr2R_13_19700001 chr2R_19700001 RAL-223 1366 chr2R 19715805 19715854 chr2R 19723324 19723373 blood 19 7519 13.0 8.0 10.5 1.7 7568 chr2R 19715805 intergenic not near genes chr2R 19719589 intergenic not near genes chr2R 19723373 intergenic not near genes chr2R_19_19715001 chr2R_19715001 RAL-223 1367 chr2R 19773965 19774031 chr2R 19774128 19774192 22 163 10.0 4.0 7.0 2.8 227 chr2R 19773965 intergenic not near genes chr2R 19774078 intergenic not near genes chr2R 19774192 intergenic not near genes chr2R_22_19770001 chr2R_19770001 RAL-223 1368 chr2R 19776578 19776586 chr2R 19779951 19779959 jockey 5 3373 13.0 15.5 14.2 0.3 3381 chr2R 19776578 intergenic not near genes chr2R 19778268 intergenic not near genes chr2R 19779959 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-223 1369 chr2R 19776591 19776614 chr2R 19779923 19779987 jockey 18 3367 9.5 11.5 10.5 1.6 3396 chr2R 19776591 intergenic not near genes chr2R 19778289 intergenic not near genes chr2R 19779987 intergenic not near genes chr2R_18_19775001 chr2R_19775001 RAL-223 1370 chr2R 19790312 19790372 chr2R 19790440 19790505 21 130 7.0 6.5 6.8 2.7 193 chr2R 19790312 intergenic not near genes chr2R 19790408 intergenic not near genes chr2R 19790505 intergenic not near genes chr2R_21_19790001 chr2R_19790001 RAL-223 1371 chr2R 19807627 19807698 chr2R 19807759 19807830 30 131 9.5 7.0 8.2 3.3 203 chr2R 19807627 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807830 intergenic not near genes chr2R_30_19805001 chr2R_19805001 RAL-223 1372 chr2R 19816019 19816034 chr2R 19816197 19816212 4 178 4.0 0.0 2.0 1.3 193 chr2R 19816019 exon Obp56h + chr2R 19816116 3` UTR Obp56h + chr2R 19816212 intergenic Obp56h + chr2R_4_19815001 chr2R_19815001 RAL-223 1373 chr2R 19821660 19821725 chr2R 19821790 19821855 33 130 12.0 10.5 11.2 2.7 195 chr2R 19821660 intergenic not near genes chr2R 19821758 intergenic not near genes chr2R 19821855 intergenic not near genes chr2R_33_19820001 chr2R_19820001 RAL-223 1374 chr2R 19914806 19914877 chr2R 19922268 19922339 mdg1 12 7462 4.5 6.0 5.2 1.9 7533 chr2R 19914806 intergenic not near genes chr2R 19918572 intergenic not near genes chr2R 19922339 intergenic not near genes chr2R_12_19915001 chr2R_19915001 RAL-223 1375 chr2R 19943220 19943292 chr2R 19943380 19943451 23 160 0.0 7.5 3.8 4.8 231 chr2R 19943220 intergenic not near genes chr2R 19943336 intergenic not near genes chr2R 19943451 intergenic not near genes chr2R_23_19940001 chr2R_19940001 RAL-223 1376 chr2R 19953702 19953771 chr2R 19953830 19953899 26 127 9.5 8.5 9.0 2.6 197 chr2R 19953702 intergenic CG44622 + chr2R 19953800 5` UTR CG44622 + chr2R 19953899 exon CG44622 + chr2R_26_19950001 chr2R_19950001 RAL-223 1377 chr2R 19957383 19957459 chr2R 19962635 19962711 copia 15 5249 5.0 8.5 6.8 1.9 5328 chr2R 19957383 intergenic CG44623 + chr2R 19960047 intergenic not near genes chr2R 19962711 intergenic not near genes chr2R_15_19960001 chr2R_19960001 RAL-223 1378 chr2R 20069201 20069270 chr2R 20071881 20071936 opus 35 2679 9.5 13.5 11.5 2.8 2735 chr2R 20069201 intergenic not near genes chr2R 20070568 intergenic not near genes chr2R 20071936 intergenic not near genes chr2R_35_20070001 chr2R_20070001 RAL-223 1379 chr2R 20080602 20080624 chr2R 20080729 20080751 9 127 2.0 24.0 13.0 0.6 149 chr2R 20080602 intergenic not near genes chr2R 20080676 intergenic not near genes chr2R 20080751 intergenic not near genes chr2R_9_20080001 chr2R_20080001 RAL-223 1380 chr2R 20087982 20088027 chr2R 20088140 20088185 1360 9 158 5.0 0.0 2.5 2.6 203 chr2R 20087982 intergenic not near genes chr2R 20088084 intergenic not near genes chr2R 20088185 intergenic not near genes chr2R_9_20085001 chr2R_20085001 RAL-223 1381 chr2R 20125724 20125748 chr2R 20125850 20125873 7 126 6.5 20.0 13.2 0.5 149 chr2R 20125724 intergenic not near genes chr2R 20125798 intergenic not near genes chr2R 20125873 intergenic not near genes chr2R_7_20125001 chr2R_20125001 RAL-223 1382 chr2R 20298317 20298335 chr2R 20298447 20298464 5 129 10.5 12.0 11.2 0.4 147 chr2R 20298317 intergenic not near genes chr2R 20298390 intergenic not near genes chr2R 20298464 intergenic not near genes chr2R_5_20295001 chr2R_20295001 RAL-223 1383 chr2R 20298338 20298371 chr2R 20298442 20298501 17 125 7.5 12.0 9.8 1.6 163 chr2R 20298338 intergenic not near genes chr2R 20298420 intergenic not near genes chr2R 20298501 intergenic not near genes chr2R_17_20295001 chr2R_20295001 RAL-223 1384 chr2R 20331688 20331765 chr2R 20331816 20331852 25 125 10.0 6.0 8.0 2.8 164 chr2R 20331688 intergenic not near genes chr2R 20331770 intergenic not near genes chr2R 20331852 intergenic not near genes chr2R_25_20330001 chr2R_20330001 RAL-223 1385 chr2R 20368468 20368496 chr2R 20377681 20377709 roo 13 9213 14.5 10.0 12.2 1.0 9241 chr2R 20368468 intergenic not near genes chr2R 20373088 intergenic not near genes chr2R 20377709 intergenic not near genes chr2R_13_20370001 chr2R_20370001 RAL-223 1386 chr2R 20434042 20434100 chr2R 20434179 20434236 7 137 0.0 6.0 3.0 1.8 194 chr2R 20434042 intron CG12484 + chr2R 20434139 intron CG12484 + chr2R 20434236 intron CG12484 + chr2R_7_20430001 chr2R_20430001 RAL-223 1387 chr2R 20452147 20452190 chr2R 20452368 20452411 19 221 5.0 9.5 7.2 2.3 264 chr2R 20452147 intron CG12484 + chr2R 20452279 intron CG12484 + chr2R 20452411 intron CG12484 + chr2R_19_20450001 chr2R_20450001 RAL-223 1388 chr2R 20465932 20466008 chr2R 20466066 20466143 26 133 5.0 8.5 6.8 3.3 211 chr2R 20465932 intron CG12484 + chr2R 20466038 intron CG12484 + chr2R 20466143 intron CG12484 + chr2R_26_20465001 chr2R_20465001 RAL-223 1389 chr2R 20467788 20467865 chr2R 20467938 20468009 29 150 6.5 11.0 8.8 3.0 221 chr2R 20467788 intron CG12484 + chr2R 20467898 intron CG12484 + chr2R 20468009 intron CG12484 + chr2R_29_20465001 chr2R_20465001 RAL-223 1390 chr2R 20473342 20473392 chr2R 20473678 20473728 11 334 4.5 3.5 4.0 2.2 386 chr2R 20473342 intron CG12484 + chr2R 20473535 intron CG12484 + chr2R 20473728 intron CG12484 + chr2R_11_20470001 chr2R_20470001 RAL-223 1391 chr2R 20489856 20489907 chr2R 20490008 20490059 10 151 5.0 12.0 8.5 1.1 203 chr2R 20489856 intergenic not near genes chr2R 20489958 intergenic not near genes chr2R 20490059 intergenic not near genes chr2R_10_20485001 chr2R_20485001 RAL-223 1392 chr2R 20506924 20506961 chr2R 20507050 20507087 6 126 2.0 1.0 1.5 2.4 163 chr2R 20506924 intergenic CR44645 + chr2R 20507006 intergenic CR44645 + chr2R 20507087 intergenic CR44645 + chr2R_6_20505001 chr2R_20505001 RAL-223 1393 chr2R 20511896 20511901 chr2R 20512041 20512041 5 143 8.0 16.5 12.2 0.4 145 chr2R 20511896 5` UTR CR44649 + chr2R 20511968 5` UTR CR44649 + chr2R 20512041 5` UTR CR44649 + chr2R_5_20510001 chr2R_20510001 RAL-223 1394 chr2R 20522994 20523063 chr2R 20523155 20523198 22 159 10.0 7.0 8.5 2.3 204 chr2R 20522994 intergenic not near genes chr2R 20523096 intergenic not near genes chr2R 20523198 intergenic not near genes chr2R_22_20520001 chr2R_20520001 RAL-223 1395 chr2R 20528711 20528776 chr2R 20528935 20528989 26 221 9.5 6.5 8.0 2.9 278 chr2R 20528711 exon CG30151 - chr2R 20528850 exon CG30151 - chr2R 20528989 exon CG30151 - chr2R_26_20525001 chr2R_20525001 RAL-223 1396 chr2R 20541946 20542014 chr2R 20542074 20542137 33 128 10.5 11.0 10.8 2.8 191 chr2R 20541946 intergenic not near genes chr2R 20542042 intergenic not near genes chr2R 20542137 intergenic not near genes chr2R_33_20540001 chr2R_20540001 RAL-223 1397 chr2R 20555341 20555346 chr2R 20555481 20555486 4 140 0.0 19.5 9.8 0.4 145 chr2R 20555341 intergenic not near genes chr2R 20555414 intergenic not near genes chr2R 20555486 intergenic not near genes chr2R_4_20555001 chr2R_20555001 RAL-223 1398 chr2R 20571250 20571275 chr2R 20571399 20571424 7 149 9.0 0.0 4.5 1.3 174 chr2R 20571250 intron qsm - chr2R 20571337 intron qsm - chr2R 20571424 intron qsm - chr2R_7_20570001 chr2R_20570001 RAL-223 1399 chr2R 20590623 20590669 chr2R 20590752 20590798 20 128 5.5 8.5 7.0 2.5 175 chr2R 20590623 intron bl + chr2R 20590710 intron bl + chr2R 20590798 intron bl + chr2R_20_20590001 chr2R_20590001 RAL-223 1400 chr2R 20667316 20667341 chr2R 20667478 20667503 12 161 15.0 24.0 19.5 0.6 187 chr2R 20667316 intergenic Fem-1 -,exu - chr2R 20667410 intergenic exu -,Fem-1 - chr2R 20667503 3` UTR exu - chr2R_12_20665001 chr2R_20665001 RAL-223 1401 chr2R 20739390 20739469 chr2R 20744208 20744287 F-element 34 4816 9.5 8.0 8.8 3.5 4897 chr2R 20739390 intron dpr + chr2R 20741838 intron dpr + chr2R 20744287 intron dpr + chr2R_34_20740001 chr2R_20740001 RAL-223 1402 chr2R 20783264 20783320 chr2R 20788086 20788142 F-element 25 4822 8.5 7.0 7.8 2.8 4878 chr2R 20783264 intergenic not near genes chr2R 20785703 intergenic not near genes chr2R 20788142 intergenic CG43666 - chr2R_25_20785001 chr2R_20785001 RAL-223 1403 chr2R 20863072 20863139 chr2R 20863208 20863275 28 134 6.0 6.5 6.2 3.9 203 chr2R 20863072 intergenic not near genes chr2R 20863174 intergenic not near genes chr2R 20863275 intergenic not near genes chr2R_28_20860001 chr2R_20860001 RAL-223 1404 chr2R 20875208 20875252 chr2R 20875350 20875391 20 139 6.0 10.5 8.2 2.2 183 chr2R 20875208 intron Ipk1 + chr2R 20875300 exon Ipk1 + chr2R 20875391 exon Ipk1 + chr2R_20_20875001 chr2R_20875001 RAL-223 1405 chr2R 20942345 20942356 chr2R 20942478 20942489 5 133 0.5 7.5 4.0 1.0 144 chr2R 20942345 intergenic not near genes chr2R 20942417 intergenic not near genes chr2R 20942489 intergenic not near genes chr2R_5_20940001 chr2R_20940001 RAL-223 1406 chr2R 20962857 20962924 chr2R 20963005 20963072 25 148 12.0 5.5 8.8 2.6 215 chr2R 20962857 intergenic not near genes chr2R 20962964 intergenic not near genes chr2R 20963072 intergenic not near genes chr2R_25_20960001 chr2R_20960001 RAL-223 1407 chr2R 20966984 20967057 chr2R 20967111 20967184 9 127 7.0 0.0 3.5 2.0 200 chr2R 20966984 intergenic not near genes chr2R 20967084 intergenic not near genes chr2R 20967184 intergenic not near genes chr2R_9_20965001 chr2R_20965001 RAL-223 1408 chr2R 20998040 20998112 chr2R 20998177 20998208 13 130 5.5 9.5 7.5 1.5 168 chr2R 20998040 intron CG10543 + chr2R 20998124 intron CG10543 + chr2R 20998208 intron CG10543 + chr2R_13_20995001 chr2R_20995001 RAL-223 1409 chr2R 21029469 21029541 chr2R 21029601 21029673 23 131 7.5 4.5 6.0 3.3 204 chr2R 21029469 3` UTR CR45148 - chr2R 21029571 3` UTR CR45148 - chr2R 21029673 3` UTR CR45148 - chr2R_23_21025001 chr2R_21025001 RAL-223 1410 chr2R 21060591 21060654 chr2R 21060717 21060780 23 126 8.5 7.5 8.0 2.6 189 chr2R 21060591 intergenic CG15653 -,mRpL54 + chr2R 21060686 intergenic mRpL54 +,CG15653 - chr2R 21060780 intergenic mRpL54 +,CG15653 - chr2R_23_21060001 chr2R_21060001 RAL-223 1411 chr2R 21080258 21080283 chr2R 21080386 21080395 14 127 9.5 7.5 8.5 1.5 137 chr2R 21080258 intron Treh + chr2R 21080326 intron Treh + chr2R 21080395 intron Treh + chr2R_14_21080001 chr2R_21080001 RAL-223 1412 chr2R 21106066 21106089 chr2R 21106198 21106221 10 132 5.0 6.5 5.8 1.5 155 chr2R 21106066 intron ktub + chr2R 21106144 intron ktub + chr2R 21106221 intron ktub + chr2R_10_21105001 chr2R_21105001 RAL-223 1413 chr2R 21136854 21136917 chr2R 21136988 21137051 18 134 1.0 7.0 4.0 3.6 197 chr2R 21136854 intron Magi - chr2R 21136952 intron Magi - chr2R 21137051 intron Magi - chr2R_18_21135001 chr2R_21135001 RAL-223 1414 chr2R 21151108 21151146 chr2R 21153797 21153856 opus 5 2706 0.5 7.5 4.0 1.0 2748 chr2R 21151108 intron CG30389 - chr2R 21152482 intron CG30389 - chr2R 21153856 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-223 1415 chr2R 21182917 21182941 chr2R 21183191 21183212 10 274 2.5 17.5 10.0 0.9 295 chr2R 21182917 intergenic Pu +,tud + chr2R 21183064 intergenic tud +,Pu + chr2R 21183212 intergenic tud + chr2R_10_21180001 chr2R_21180001 RAL-223 1416 chr2R 21231094 21231162 chr2R 21232154 21232222 33 1061 65.0 53.5 59.2 0.5 1128 chr2R 21231094 intron ASPP - chr2R 21231658 intron ASPP - chr2R 21232222 intron ASPP - chr2R_33_21230001 chr2R_21230001 RAL-223 1417 chr2R 21247464 21247522 chr2R 21247996 21248047 26 530 7.5 9.0 8.2 2.8 583 chr2R 21247464 intron ASPP - chr2R 21247756 intron ASPP - chr2R 21248047 intron ASPP - chr2R_26_21245001 chr2R_21245001 RAL-223 1418 chr2R 21251770 21251849 chr2R 21252047 21252125 34 277 5.0 10.0 7.5 4.0 355 chr2R 21251770 intergenic not near genes chr2R 21251948 intergenic not near genes chr2R 21252125 intergenic not near genes chr2R_34_21250001 chr2R_21250001 RAL-223 1419 chr2R 21258459 21258467 chr2R 21258587 21258595 7 128 0.0 15.0 7.5 0.8 136 chr2R 21258459 intron Rgk3 + chr2R 21258527 intron Rgk3 + chr2R 21258595 intron Rgk3 + chr2R_7_21255001 chr2R_21255001 RAL-223 1420 chr2R 21259615 21259664 chr2R 21259744 21259793 14 126 14.0 13.5 13.8 0.9 178 chr2R 21259615 intron Rgk3 + chr2R 21259704 intron Rgk3 + chr2R 21259793 intron Rgk3 + chr2R_14_21255001 chr2R_21255001 RAL-223 1421 chr2R 21273919 21273998 chr2R 21274055 21274134 22 136 4.0 6.5 5.2 3.5 215 chr2R 21273919 intron Rgk3 + chr2R 21274026 intron Rgk3 + chr2R 21274134 intron Rgk3 + chr2R_22_21270001 chr2R_21270001 RAL-223 1422 chr2R 21285383 21285432 chr2R 21285510 21285554 20 126 10.5 8.5 9.5 1.9 171 chr2R 21285383 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285468 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285554 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_20_21285001 chr2R_21285001 RAL-223 1423 chr2R 21344391 21344467 chr2R 21344527 21344603 35 134 8.5 1.0 4.8 6.0 212 chr2R 21344391 exon CG15666 + chr2R 21344497 intron CG15666 + chr2R 21344603 intron CG15666 + chr2R_35_21340001 chr2R_21340001 RAL-223 1424 chr2R 21366475 21366545 chr2R 21366630 21366700 18 154 3.5 5.0 4.2 3.5 225 chr2R 21366475 intron cv-2 - chr2R 21366588 intron cv-2 - chr2R 21366700 exon cv-2 - chr2R_18_21365001 chr2R_21365001 RAL-223 1425 chr2R 21380138 21380209 chr2R 21380347 21380418 32 209 9.0 7.5 8.2 3.5 280 chr2R 21380138 intergenic not near genes chr2R 21380278 intergenic not near genes chr2R 21380418 intergenic not near genes chr2R_32_21380001 chr2R_21380001 RAL-223 1426 chr2R 21417228 21417236 chr2R 21417380 21417388 4 152 13.5 0.0 6.8 0.5 160 chr2R 21417228 intron Sdc - chr2R 21417308 intron Sdc - chr2R 21417388 intron Sdc - chr2R_4_21415001 chr2R_21415001 RAL-223 1427 chr2R 21441914 21441987 chr2R 21442085 21442156 13 169 0.0 5.5 2.8 3.4 242 chr2R 21441914 intron Sdc - chr2R 21442035 intron Sdc - chr2R 21442156 intron Sdc - chr2R_13_21440001 chr2R_21440001 RAL-223 1428 chr2R 21532845 21532874 chr2R 21532973 21533002 14 128 8.0 5.5 6.8 1.8 157 chr2R 21532845 intron Egfr + chr2R 21532924 intron Egfr + chr2R 21533002 intron Egfr + chr2R_14_21530001 chr2R_21530001 RAL-223 1429 chr2R 21552062 21552069 chr2R 21552451 21552465 5 392 60.0 50.5 55.2 0.1 403 chr2R 21552062 intron Egfr + chr2R 21552264 intron Egfr + chr2R 21552465 intron Egfr + chr2R_5_21550001 chr2R_21550001 RAL-223 1430 chr2R 21592803 21592847 chr2R 21592936 21592980 6 131 5.5 12.0 8.8 0.6 177 chr2R 21592803 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592980 intergenic not near genes chr2R_6_21590001 chr2R_21590001 RAL-223 1431 chr2R 21605872 21605951 chr2R 21606006 21606085 27 134 7.5 5.0 6.2 3.8 213 chr2R 21605872 3` UTR CG10433 - chr2R 21605978 3` UTR CG10433 - chr2R 21606085 exon CG10433 - chr2R_27_21605001 chr2R_21605001 RAL-223 1432 chr2R 21645700 21645734 chr2R 21646031 21646065 16 330 14.0 9.0 11.5 1.3 365 chr2R 21645700 intergenic CG10082 + chr2R 21645882 intergenic CG10082 + chr2R 21646065 intergenic CG10082 + chr2R_16_21645001 chr2R_21645001 RAL-223 1433 chr2R 21645735 21645766 chr2R 21646030 21646097 15 322 5.5 9.0 7.2 1.8 362 chr2R 21645735 intergenic CG10082 + chr2R 21645916 intergenic CG10082 + chr2R 21646097 intergenic CG10082 + chr2R_15_21645001 chr2R_21645001 RAL-223 1434 chr2R 21659620 21659687 chr2R 21659901 21659949 14 277 31.0 40.5 35.8 0.4 329 chr2R 21659620 exon Rae1 - chr2R 21659784 exon Rae1 - chr2R 21659949 5` UTR Rae1 - chr2R_14_21655001 chr2R_21655001 RAL-223 1435 chr2R 21725181 21725221 chr2R 21725308 21725348 17 127 0.0 11.5 5.8 2.5 167 chr2R 21725181 intergenic not near genes chr2R 21725264 intergenic not near genes chr2R 21725348 intergenic not near genes chr2R_17_21725001 chr2R_21725001 RAL-223 1436 chr2R 21738233 21738303 chr2R 21747443 21747513 roo 18 9205 6.5 7.5 7.0 2.2 9280 chr2R 21738233 intergenic not near genes chr2R 21742873 intergenic not near genes chr2R 21747513 intergenic not near genes chr2R_18_21740001 chr2R_21740001 RAL-223 1437 chr2R 21753041 21753058 chr2R 21753576 21753593 roo 7 534 18.0 12.0 15.0 0.4 552 chr2R 21753041 intergenic not near genes chr2R 21753317 intergenic not near genes chr2R 21753593 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-223 1438 chr2R 21753061 21753110 chr2R 21753596 21753645 roo 26 535 7.5 16.0 11.8 2.0 584 chr2R 21753061 intergenic not near genes chr2R 21753353 intergenic not near genes chr2R 21753645 intergenic not near genes chr2R_26_21750001 chr2R_21750001 RAL-223 1439 chr2R 21775424 21775467 chr2R 21775837 21775880 17 412 7.5 7.5 7.5 2.0 456 chr2R 21775424 intergenic not near genes chr2R 21775652 intergenic not near genes chr2R 21775880 intergenic not near genes chr2R_17_21775001 chr2R_21775001 RAL-223 1440 chr2R 21802379 21802447 chr2R 21802520 21802588 9 141 7.0 10.0 8.5 0.9 209 chr2R 21802379 intergenic not near genes chr2R 21802484 intergenic not near genes chr2R 21802588 intergenic not near genes chr2R_9_21800001 chr2R_21800001 RAL-223 1441 chr2R 21809473 21809507 chr2R 21817763 21817797 roo 13 8289 9.5 9.0 9.2 1.3 8324 chr2R 21809473 intergenic not near genes chr2R 21813635 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_13_21810001 chr2R_21810001 RAL-223 1442 chr2R 21863541 21863614 chr2R 21863679 21863750 11 137 0.0 5.0 2.5 3.1 209 chr2R 21863541 intergenic not near genes chr2R 21863646 intergenic not near genes chr2R 21863750 intergenic not near genes chr2R_11_21860001 chr2R_21860001 RAL-223 1443 chr2R 21868969 21868981 chr2R 21869109 21869121 4 140 8.5 0.0 4.2 0.8 152 chr2R 21868969 intergenic not near genes chr2R 21869045 intergenic not near genes chr2R 21869121 intergenic not near genes chr2R_4_21865001 chr2R_21865001 RAL-223 1444 chr2R 21888249 21888288 chr2R 21888410 21888449 15 161 3.0 8.0 5.5 2.3 200 chr2R 21888249 intron Fili + chr2R 21888349 intron Fili + chr2R 21888449 intron Fili + chr2R_15_21885001 chr2R_21885001 RAL-223 1445 chr2R 21899777 21899803 chr2R 21899978 21900004 8 201 0.0 6.5 3.2 1.9 227 chr2R 21899777 intron Fili + chr2R 21899890 intron Fili + chr2R 21900004 intron Fili + chr2R_8_21895001 chr2R_21895001 RAL-223 1446 chr2R 21906235 21906297 chr2R 21906371 21906448 23 150 3.5 5.5 4.5 4.2 213 chr2R 21906235 intron Fili + chr2R 21906342 intron Fili + chr2R 21906448 intron Fili + chr2R_23_21905001 chr2R_21905001 RAL-223 1447 chr2R 21919836 21919898 chr2R 21919974 21920036 22 137 7.0 9.5 8.2 2.4 200 chr2R 21919836 intron Fili + chr2R 21919936 intron Fili + chr2R 21920036 intron Fili + chr2R_22_21915001 chr2R_21915001 RAL-223 1448 chr2R 21936348 21936427 chr2R 21936628 21936707 31 278 9.5 9.0 9.2 3.0 359 chr2R 21936348 intron,exon Fili +,CG43742 - chr2R 21936528 intron,intron Fili +,CG43742 - chr2R 21936707 intron,exon Fili +,CG43742 - chr2R_31_21935001 chr2R_21935001 RAL-223 1449 chr2R 21991184 21991242 chr2R 21991312 21991369 16 125 2.0 7.0 4.5 2.9 185 chr2R 21991184 intron CG34370 - chr2R 21991276 intron CG34370 - chr2R 21991369 intron CG34370 - chr2R_16_21990001 chr2R_21990001 RAL-223 1450 chr2R 22004249 22004320 chr2R 22004393 22004464 30 143 4.5 6.5 5.5 4.6 215 chr2R 22004249 intron CG34370 - chr2R 22004356 intron CG34370 - chr2R 22004464 intron CG34370 - chr2R_30_22000001 chr2R_22000001 RAL-223 1451 chr2R 22161665 22161746 chr2R 22161856 22161941 23 191 8.0 3.5 5.8 3.4 276 chr2R 22161665 intron a + chr2R 22161803 intron a + chr2R 22161941 intron a + chr2R_23_22160001 chr2R_22160001 RAL-223 1452 chr2R 22185633 22185707 chr2R 22185782 22185856 11 149 4.5 0.0 2.2 3.4 223 chr2R 22185633 exon MED16 + chr2R 22185744 3` UTR MED16 + chr2R 22185856 3` UTR MED16 + chr2R_11_22185001 chr2R_22185001 RAL-223 1453 chr2R 22189393 22189469 chr2R 22189571 22189646 30 176 6.5 5.0 5.8 4.4 253 chr2R 22189393 3` UTR Vps35 + chr2R 22189520 3` UTR Vps35 + chr2R 22189646 3` UTR Vps35 + chr2R_30_22185001 chr2R_22185001 RAL-223 1454 chr2R 22292134 22292141 chr2R 22292372 22292380 6 239 17.0 8.5 12.8 0.4 246 chr2R 22292134 5` UTR CR43422 + chr2R 22292257 5` UTR CR43422 + chr2R 22292380 5` UTR CR43422 + chr2R_6_22290001 chr2R_22290001 RAL-223 1455 chr2R 22292142 22292208 chr2R 22292371 22292447 21 238 5.5 8.0 6.8 2.7 305 chr2R 22292142 5` UTR CR43422 + chr2R 22292294 5` UTR CR43422 + chr2R 22292447 intergenic CR43422 + chr2R_21_22290001 chr2R_22290001 RAL-223 1456 chr2R 22349650 22349720 chr2R 22351484 22351554 jockey 22 1833 6.5 12.5 9.5 2.1 1904 chr2R 22349650 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351554 intron Liprin-gamma - chr2R_22_22350001 chr2R_22350001 RAL-223 1457 chr2R 22360153 22360210 chr2R 22360287 22360344 18 131 8.5 12.5 10.5 1.6 191 chr2R 22360153 intron Liprin-gamma - chr2R 22360248 intron Liprin-gamma - chr2R 22360344 intron Liprin-gamma - chr2R_18_22360001 chr2R_22360001 RAL-223 1458 chr2R 22360336 22360345 chr2R 22360819 22360828 jockey 4 483 14.0 8.0 11.0 0.3 492 chr2R 22360336 intron Liprin-gamma - chr2R 22360582 intron Liprin-gamma - chr2R 22360828 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-223 1459 chr2R 22374592 22374636 chr2R 22374729 22374773 19 137 7.0 9.5 8.2 2.1 181 chr2R 22374592 3` UTR CR44759 - chr2R 22374682 3` UTR CR44759 - chr2R 22374773 3` UTR CR44759 - chr2R_19_22370001 chr2R_22370001 RAL-223 1460 chr2R 22450927 22450972 chr2R 22451518 22451578 20 602 7.5 9.5 8.5 2.1 651 chr2R 22450927 intergenic not near genes chr2R 22451252 intergenic not near genes chr2R 22451578 intergenic not near genes chr2R_20_22450001 chr2R_22450001 RAL-223 1461 chr2R 22460330 22460404 chr2R 22460459 22460533 26 129 6.5 6.5 6.5 3.5 203 chr2R 22460330 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460533 intron CG10384 + chr2R_26_22460001 chr2R_22460001 RAL-223 1462 chr2R 22465275 22465345 chr2R 22465518 22465593 BS 20 242 10.0 4.0 7.0 2.5 318 chr2R 22465275 intron CG10384 + chr2R 22465434 intron CG10384 + chr2R 22465593 intron CG10384 + chr2R_20_22465001 chr2R_22465001 RAL-223 1463 chr2R 22503860 22503888 chr2R 22504005 22504033 12 145 6.5 9.0 7.8 1.4 173 chr2R 22503860 intron px - chr2R 22503946 intron px - chr2R 22504033 intron px - chr2R_12_22500001 chr2R_22500001 RAL-223 1464 chr2R 22504286 22504351 chr2R 22504419 22504474 14 135 7.5 4.5 6.0 2.0 188 chr2R 22504286 intron px - chr2R 22504380 intron px - chr2R 22504474 intron px - chr2R_14_22500001 chr2R_22500001 RAL-223 1465 chr2R 22536094 22536151 chr2R 22536331 22536379 6 231 13.5 0.0 6.8 0.8 285 chr2R 22536094 intron px - chr2R 22536236 intron px - chr2R 22536379 intron px - chr2R_6_22535001 chr2R_22535001 RAL-223 1466 chr2R 22545584 22545640 chr2R 22545713 22545769 29 129 5.5 9.5 7.5 3.4 185 chr2R 22545584 intron px - chr2R 22545676 intron px - chr2R 22545769 intron px - chr2R_29_22545001 chr2R_22545001 RAL-223 1467 chr2R 22580418 22580445 chr2R 22586612 22586644 diver 13 6199 0.0 8.0 4.0 2.6 6226 chr2R 22580418 intron dnr1 - chr2R 22583531 intron dnr1 - chr2R 22586644 intron dnr1 - chr2R_13_22580001 chr2R_22580001 RAL-223 1468 chr2R 22588108 22588154 chr2R 22588253 22588299 19 142 11.0 9.0 10.0 1.7 191 chr2R 22588108 intron dnr1 - chr2R 22588204 intron dnr1 - chr2R 22588299 intron dnr1 - chr2R_19_22585001 chr2R_22585001 RAL-223 1469 chr2R 22663083 22663158 chr2R 22663213 22663288 38 130 5.0 9.0 7.0 4.8 205 chr2R 22663083 3` UTR CG42566 + chr2R 22663186 3` UTR CG42566 + chr2R 22663288 intergenic CG42566 +,CG4250 + chr2R_38_22660001 chr2R_22660001 RAL-223 1470 chr2R 22666863 22666905 chr2R 22666982 22667041 25 134 2.5 8.0 5.2 4.0 178 chr2R 22666863 intergenic CR42868 +,CR45269 -,CG30273 + chr2R 22666952 intergenic CR42868 +,CG30273 +,CR45269 - chr2R 22667041 intergenic CG30273 +,CR42868 +,CR45269 - chr2R_25_22665001 chr2R_22665001 RAL-223 1471 chr2R 22774911 22774986 chr2R 22775380 22775455 jockey 37 469 9.5 8.0 8.8 3.8 544 chr2R 22774911 intron CG42260 - chr2R 22775183 intron CG42260 - chr2R 22775455 intron CG42260 - chr2R_37_22775001 chr2R_22775001 RAL-223 1472 chr2R 22785701 22785755 chr2R 22785829 22785883 16 128 7.0 6.5 6.8 2.1 182 chr2R 22785701 intron CG42260 - chr2R 22785792 intron CG42260 - chr2R 22785883 intron CG42260 - chr2R_16_22785001 chr2R_22785001 RAL-223 1473 chr2R 22823122 22823194 chr2R 22823283 22823355 35 159 9.0 8.5 8.8 3.6 233 chr2R 22823122 exon CG42284 + chr2R 22823238 intron CG42284 + chr2R 22823355 intron CG42284 + chr2R_35_22820001 chr2R_22820001 RAL-223 1474 chr2R 22842986 22843045 chr2R 22844998 22845057 flea 20 2010 11.0 11.5 11.2 1.6 2071 chr2R 22842986 intergenic CG9826 + chr2R 22844022 intergenic not near genes chr2R 22845057 intergenic not near genes chr2R_20_22840001 chr2R_22840001 RAL-223 1475 chr2R 22907358 22907385 chr2R 22907501 22907523 8 139 20.5 9.5 15.0 0.5 165 chr2R 22907358 intron nahoda + chr2R 22907440 intron nahoda + chr2R 22907523 intron nahoda + chr2R_8_22905001 chr2R_22905001 RAL-223 1476 chr2R 22907387 22907430 chr2R 22907497 22907517 10 126 8.5 9.0 8.8 1.0 130 chr2R 22907387 intron nahoda + chr2R 22907452 intron nahoda + chr2R 22907517 intron nahoda + chr2R_10_22905001 chr2R_22905001 RAL-223 1477 chr2R 22942589 22942656 chr2R 22942751 22942818 6 161 5.5 9.0 7.2 0.7 229 chr2R 22942589 5` UTR CG42694 + chr2R 22942704 5` UTR CG42694 + chr2R 22942818 5` UTR CG42694 + chr2R_6_22940001 chr2R_22940001 RAL-223 1478 chr2R 22951667 22951865 chr2R 22951857 22952001 28 201 0.0 0.0 0.0 28.0 334 chr2R 22951667 3` UTR CR32835 - chr2R 22951834 3` UTR CR32835 - chr2R 22952001 3` UTR CR32835 - chr2R_28_22950001 chr2R_22950001 RAL-223 1479 chr2R 22953370 22953373 chr2R 22953514 22953517 4 144 10.5 9.5 10.0 0.4 147 chr2R 22953370 intron CR32835 - chr2R 22953444 3` UTR CR32835 - chr2R 22953517 3` UTR CR32835 - chr2R_4_22950001 chr2R_22950001 RAL-223 1480 chr2R 22958765 22958804 chr2R 22963896 22963945 flea 13 5134 10.5 14.0 12.2 1.0 5180 chr2R 22958765 intergenic not near genes chr2R 22961355 intergenic not near genes chr2R 22963945 intergenic not near genes chr2R_13_22960001 chr2R_22960001 RAL-223 1481 chr2R 22968089 22968168 chr2R 22968228 22968251 32 136 7.5 5.0 6.2 4.4 162 chr2R 22968089 intergenic not near genes chr2R 22968170 intergenic not near genes chr2R 22968251 intergenic not near genes chr2R_32_22965001 chr2R_22965001 RAL-223 1482 chr2R 22978239 22978288 chr2R 22978367 22978416 16 128 10.5 7.5 9.0 1.6 177 chr2R 22978239 intergenic not near genes chr2R 22978328 intergenic not near genes chr2R 22978416 intergenic not near genes chr2R_16_22975001 chr2R_22975001 RAL-223 1483 chr2R 23037240 23037299 chr2R 23037366 23037420 13 119 8.0 9.5 8.8 1.3 180 chr2R 23037240 intron,intron twi +,CG42741 - chr2R 23037330 intron,intron twi +,CG42741 - chr2R 23037420 intron,intron twi +,CG42741 - chr2R_13_23035001 chr2R_23035001 RAL-223 1484 chr2R 23041153 23041193 chr2R 23041281 23041321 16 128 10.0 14.0 12.0 1.2 168 chr2R 23041153 intron,intron twi +,CG42741 - chr2R 23041237 intron,intron twi +,CG42741 - chr2R 23041321 intron,intron twi +,CG42741 - chr2R_16_23040001 chr2R_23040001 RAL-223 1485 chr2R 23052607 23052684 chr2R 23052733 23052800 27 126 12.0 12.0 12.0 2.1 193 chr2R 23052607 intergenic not near genes chr2R 23052704 intergenic not near genes chr2R 23052800 intergenic not near genes chr2R_27_23050001 chr2R_23050001 RAL-223 1486 chr2R 23061697 23061782 chr2R 23061829 23061908 37 125 7.0 9.0 8.0 4.1 211 chr2R 23061697 3` UTR l(2)06496 - chr2R 23061802 3` UTR l(2)06496 - chr2R 23061908 3` UTR l(2)06496 - chr2R_37_23060001 chr2R_23060001 RAL-223 1487 chr2R 23158296 23158355 chr2R 23158423 23158482 19 126 13.5 9.5 11.5 1.5 186 chr2R 23158296 intron CG9899 + chr2R 23158389 intron CG9899 + chr2R 23158482 intron CG9899 + chr2R_19_23155001 chr2R_23155001 RAL-223 1488 chr2R 23174991 23175065 chr2R 23175118 23175187 32 126 8.0 0.0 4.0 6.4 196 chr2R 23174991 intron CG34371 - chr2R 23175089 intron CG34371 - chr2R 23175187 intron CG34371 - chr2R_32_23175001 chr2R_23175001 RAL-223 1489 chr2R 23188512 23188580 chr2R 23188640 23188708 26 128 11.5 8.0 9.8 2.4 196 chr2R 23188512 intron CG34371 - chr2R 23188610 intron CG34371 - chr2R 23188708 intron CG34371 - chr2R_26_23185001 chr2R_23185001 RAL-223 1490 chr2R 23194919 23194922 chr2R 23195045 23195048 4 126 10.0 24.0 17.0 0.2 129 chr2R 23194919 intron CG34371 - chr2R 23194984 intron CG34371 - chr2R 23195048 intron CG34371 - chr2R_4_23190001 chr2R_23190001 RAL-223 1491 chr2R 23236767 23236852 chr2R 23236915 23236996 17 145 5.0 5.5 5.2 2.7 229 chr2R 23236767 intergenic not near genes chr2R 23236882 intergenic not near genes chr2R 23236996 intergenic not near genes chr2R_17_23235001 chr2R_23235001 RAL-223 1492 chr2R 23257522 23257624 chr2R 23257736 23257781 26 196 0.0 10.5 5.2 4.2 259 chr2R 23257522 intergenic not near genes chr2R 23257652 intergenic not near genes chr2R 23257781 intergenic not near genes chr2R_26_23255001 chr2R_23255001 RAL-223 1493 chr2R 23291279 23291320 chr2R 23291407 23291448 20 128 13.0 0.0 6.5 2.7 169 chr2R 23291279 3` UTR CR44783 - chr2R 23291364 3` UTR CR44783 - chr2R 23291448 intergenic CR44783 - chr2R_20_23290001 chr2R_23290001 RAL-223 1494 chr2R 23315337 23315408 chr2R 23315560 23315610 21 218 3.5 4.5 4.0 4.2 273 chr2R 23315337 intergenic not near genes chr2R 23315474 intergenic not near genes chr2R 23315610 intergenic not near genes chr2R_21_23315001 chr2R_23315001 RAL-223 1495 chr2R 23402586 23402611 chr2R 23407683 23407708 flea 12 5097 6.0 9.5 7.8 1.4 5122 chr2R 23402586 intergenic CG3520 - chr2R 23405147 intergenic not near genes chr2R 23407708 intergenic not near genes chr2R_12_23405001 chr2R_23405001 RAL-223 1496 chr2R 23411010 23411083 chr2R 23411134 23411215 13 131 5.5 4.0 4.8 2.2 205 chr2R 23411010 intergenic not near genes chr2R 23411112 intergenic not near genes chr2R 23411215 intergenic not near genes chr2R_13_23410001 chr2R_23410001 RAL-223 1497 chr2R 23413543 23413559 chr2R 23413634 23413679 6 102 13.5 6.5 10.0 0.5 136 chr2R 23413543 intron CG9812 - chr2R 23413611 intron CG9812 - chr2R 23413679 intron CG9812 - chr2R_6_23410001 chr2R_23410001 RAL-223 1498 chr2R 23421041 23421114 chr2R 23421170 23421243 18 129 8.0 5.5 6.8 2.3 202 chr2R 23421041 intergenic CG9815 - chr2R 23421142 intergenic CG9815 - chr2R 23421243 intergenic CG9815 - chr2R_18_23420001 chr2R_23420001 RAL-223 1499 chr2R 23437187 23437224 chr2R 23437314 23437351 15 125 12.0 12.0 12.0 1.2 164 chr2R 23437187 intergenic not near genes chr2R 23437269 intergenic not near genes chr2R 23437351 intergenic not near genes chr2R_15_23435001 chr2R_23435001 RAL-223 1500 chr2R 23461095 23461131 chr2R 23461227 23461242 8 127 8.5 14.5 11.5 0.6 147 chr2R 23461095 intron CG43795 + chr2R 23461168 intron CG43795 + chr2R 23461242 intron CG43795 + chr2R_8_23460001 chr2R_23460001 RAL-223 1501 chr2R 23467519 23467583 chr2R 23467719 23467783 27 200 8.0 8.0 8.0 3.0 264 chr2R 23467519 intron CG43795 + chr2R 23467651 intron CG43795 + chr2R 23467783 intron CG43795 + chr2R_27_23465001 chr2R_23465001 RAL-223 1502 chr2R 23481615 23481673 chr2R 23481752 23481810 13 137 0.0 13.5 6.8 1.7 195 chr2R 23481615 intron CG43795 + chr2R 23481712 intron CG43795 + chr2R 23481810 intron CG43795 + chr2R_13_23480001 chr2R_23480001 RAL-223 1503 chr2R 23518145 23518220 chr2R 23518273 23518349 25 128 5.0 9.0 7.0 3.1 204 chr2R 23518145 intergenic not near genes chr2R 23518247 intergenic not near genes chr2R 23518349 intergenic not near genes chr2R_25_23515001 chr2R_23515001 RAL-223 1504 chr2R 23529530 23529590 chr2R 23537156 23537216 412 25 7622 11.0 11.0 11.0 2.1 7686 chr2R 23529530 exon bw - chr2R 23533373 intron bw - chr2R 23537216 exon bw - chr2R_25_23530001 chr2R_23530001 RAL-223 1505 chr2R 23588041 23588074 chr2R 23588173 23588201 4 130 0.0 17.0 8.5 0.4 160 chr2R 23588041 intron apt + chr2R 23588121 intron apt + chr2R 23588201 intron apt + chr2R_4_23585001 chr2R_23585001 RAL-223 1506 chr2R 23700190 23700269 chr2R 23700529 23700586 21 338 4.5 5.0 4.8 3.6 396 chr2R 23700190 exon CG4091 - chr2R 23700388 exon CG4091 - chr2R 23700586 exon CG4091 - chr2R_21_23700001 chr2R_23700001 RAL-223 1507 chr2R 23739706 23739728 chr2R 23739826 23739842 7 119 12.5 2.5 7.5 0.8 136 chr2R 23739706 intron egl - chr2R 23739774 intron egl - chr2R 23739842 intron egl - chr2R_7_23735001 chr2R_23735001 RAL-223 1508 chr2R 23784428 23784436 chr2R 23784556 23784564 9 128 15.5 12.5 14.0 0.6 136 chr2R 23784428 intron CG9850 - chr2R 23784496 intron CG9850 - chr2R 23784564 intron CG9850 - chr2R_9_23780001 chr2R_23780001 RAL-223 1509 chr2R 23784443 23784496 chr2R 23784571 23784624 17 127 11.0 13.5 12.2 1.3 181 chr2R 23784443 intron CG9850 - chr2R 23784534 intron CG9850 - chr2R 23784624 intron CG9850 - chr2R_17_23780001 chr2R_23780001 RAL-223 1510 chr2R 23819107 23819142 chr2R 23819235 23819287 15 144 9.5 4.0 6.8 1.9 180 chr2R 23819107 intergenic not near genes chr2R 23819197 intergenic not near genes chr2R 23819287 intergenic not near genes chr2R_15_23815001 chr2R_23815001 RAL-223 1511 chr2R 23819863 23819938 chr2R 23820004 23820078 34 140 11.0 5.0 8.0 3.8 215 chr2R 23819863 intergenic CG5549 + chr2R 23819970 intergenic CG5549 + chr2R 23820078 intergenic CG5549 + chr2R_34_23815001 chr2R_23815001 RAL-223 1512 chr2R 23831249 23831309 chr2R 23831381 23831441 23 131 12.5 9.5 11.0 1.9 192 chr2R 23831249 intron CG5549 + chr2R 23831345 intron CG5549 + chr2R 23831441 intron CG5549 + chr2R_23_23830001 chr2R_23830001 RAL-223 1513 chr2R 23914264 23914324 chr2R 23921938 23921998 412 29 7673 8.0 10.0 9.0 2.9 7734 chr2R 23914264 exon kcc + chr2R 23918131 intron kcc + chr2R 23921998 exon kcc + chr2R_29_23915001 chr2R_23915001 RAL-223 1514 chr2R 23926797 23926844 chr2R 23926929 23926976 12 132 3.0 9.0 6.0 1.7 179 chr2R 23926797 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926886 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926976 3` UTR Ca-P60A - chr2R_12_23925001 chr2R_23925001 RAL-223 1515 chr2R 23986486 23986541 chr2R 23986616 23986671 19 130 7.0 20.5 13.8 1.3 185 chr2R 23986486 intron Phm - chr2R 23986578 intron Phm - chr2R 23986671 intron,5` UTR Phm -,CG30178 + chr2R_19_23985001 chr2R_23985001 RAL-223 1516 chr2R 24031335 24031360 chr2R 24031469 24031494 13 134 19.5 10.5 15.0 0.8 159 chr2R 24031335 5` UTR CG30172 - chr2R 24031414 5` UTR CG30172 - chr2R 24031494 intergenic Chi -,CG30172 - chr2R_13_24030001 chr2R_24030001 RAL-223 1517 chr2R 24031364 24031407 chr2R 24031498 24031541 22 132 10.0 16.0 13.0 1.6 177 chr2R 24031364 5` UTR CG30172 - chr2R 24031452 intergenic CG30172 -,Chi - chr2R 24031541 3` UTR Chi - chr2R_22_24030001 chr2R_24030001 RAL-223 1518 chr2R 24077884 24077927 chr2R 24078010 24078053 28 126 14.0 10.0 12.0 2.2 169 chr2R 24077884 3` UTR Mlp60A + chr2R 24077968 3` UTR Mlp60A + chr2R 24078053 3` UTR Mlp60A + chr2R_28_24075001 chr2R_24075001 RAL-223 1519 chr2R 21600232 21600236 chr2R 24077935 24077939 4 2477703 35.0 19.5 27.2 0.1 2477707 chr2R 21600232 intergenic not near genes chr2R 22839086 exon CG9825 + chr2R 24077939 3` UTR Mlp60A + chr2R_4_22835001 chr2R_22835001 RAL-223 1520 chr2R 24147035 24147096 chr2R 24154648 24154724 412 24 7626 4.5 10.5 7.5 2.8 7689 chr2R 24147035 intron Dat + chr2R 24150880 intron Dat + chr2R 24154724 intron Dat + chr2R_24_24150001 chr2R_24150001 RAL-223 1521 chr2R 24177188 24177261 chr2R 24184723 24184796 412 34 7532 12.5 15.0 13.8 2.3 7608 chr2R 24177188 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184796 intron Nop60B + chr2R_34_24180001 chr2R_24180001 RAL-223 1522 chr2R 24212244 24212320 chr2R 24212392 24212468 37 148 7.0 12.0 9.5 3.5 224 chr2R 24212244 intergenic CG30419 - chr2R 24212356 intergenic CG30419 - chr2R 24212468 intergenic CG30419 - chr2R_37_24210001 chr2R_24210001 RAL-223 1523 chr2R 24228343 24228427 chr2R 24228474 24228506 21 111 9.5 8.5 9.0 2.1 163 chr2R 24228343 intron CG30419 - chr2R 24228424 intron CG30419 - chr2R 24228506 intron CG30419 - chr2R_21_24225001 chr2R_24225001 RAL-223 1524 chr2R 24243707 24243768 chr2R 24243849 24243864 16 146 6.0 6.0 6.0 2.3 157 chr2R 24243707 intron nord + chr2R 24243786 intron nord + chr2R 24243864 intron nord + chr2R_16_24240001 chr2R_24240001 RAL-223 1525 chr2R 24272799 24272806 chr2R 24272907 24272934 roo 5 119 11.0 20.5 15.8 0.3 135 chr2R 24272799 intergenic not near genes chr2R 24272866 intergenic not near genes chr2R 24272934 intergenic not near genes chr2R_5_24270001 chr2R_24270001 RAL-223 1526 chr2R 24303485 24303492 chr2R 24303614 24303621 6 129 16.5 10.5 13.5 0.4 136 chr2R 24303485 intergenic not near genes chr2R 24303553 intergenic not near genes chr2R 24303621 intergenic not near genes chr2R_6_24300001 chr2R_24300001 RAL-223 1527 chr2R 24303493 24303535 chr2R 24303602 24303649 12 121 8.0 10.0 9.0 1.2 156 chr2R 24303493 intergenic not near genes chr2R 24303571 intergenic not near genes chr2R 24303649 intergenic not near genes chr2R_12_24300001 chr2R_24300001 RAL-223 1528 chr2R 24323574 24323650 chr2R 24323717 24323791 35 141 4.0 11.5 7.8 4.0 217 chr2R 24323574 intergenic not near genes chr2R 24323682 intergenic not near genes chr2R 24323791 intergenic not near genes chr2R_35_24320001 chr2R_24320001 RAL-223 1529 chr2R 24353384 24353415 chr2R 24361796 24361827 roo 15 8412 16.0 13.5 14.8 0.9 8443 chr2R 24353384 intron,intron bs +,CR44811 - chr2R 24357606 intron,intron bs +,CR44811 - chr2R 24361827 intron,intron bs +,CR44811 - chr2R_15_24355001 chr2R_24355001 RAL-223 1530 chr2R 24415500 24415529 chr2R 24415858 24415887 15 358 7.0 15.5 11.2 1.2 387 chr2R 24415500 3` UTR prom - chr2R 24415694 intron prom - chr2R 24415887 intron prom - chr2R_15_24415001 chr2R_24415001 RAL-223 1531 chr2R 24430922 24430942 chr2R 24431060 24431077 11 137 0.0 26.0 13.0 0.8 155 chr2R 24430922 intergenic CG15873 -,Pgam5-2 - chr2R 24431000 intergenic CG15873 -,Pgam5-2 - chr2R 24431077 intergenic Pgam5-2 -,CG15873 - chr2R_11_24430001 chr2R_24430001 RAL-223 1532 chr2R 24493040 24493087 chr2R 24493179 24493226 20 138 10.0 6.5 8.2 2.2 186 chr2R 24493040 intergenic CG13589 -,CG13590 - chr2R 24493133 intergenic CG13590 -,CG13589 - chr2R 24493226 intergenic CG13590 -,CG13589 - chr2R_20_24490001 chr2R_24490001 RAL-223 1533 chr2R 24509264 24509332 chr2R 24509399 24509467 29 134 11.0 9.0 10.0 2.6 203 chr2R 24509264 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509467 intergenic Letm1 - chr2R_29_24505001 chr2R_24505001 RAL-223 1534 chr2R 24520570 24520643 chr2R 24521158 24521231 37 588 10.0 10.5 10.2 3.3 661 chr2R 24520570 exon Ir60d + chr2R 24520900 exon Ir60d + chr2R 24521231 intergenic Ir60d + chr2R_37_24520001 chr2R_24520001 RAL-223 1535 chr2R 24568295 24568369 chr2R 24568421 24568469 10 123 11.5 9.5 10.5 0.9 174 chr2R 24568295 3` UTR Fcp1 - chr2R 24568382 3` UTR Fcp1 - chr2R 24568469 exon Fcp1 - chr2R_10_24565001 chr2R_24565001 RAL-223 1536 chr2R 24590045 24590141 chr2R 24590203 24590276 23 152 0.0 7.0 3.5 5.1 231 chr2R 24590045 intron pio + chr2R 24590160 intron pio + chr2R 24590276 intron pio + chr2R_23_24590001 chr2R_24590001 RAL-223 1537 chr2R 24592912 24592940 chr2R 24593049 24593080 17 139 13.0 5.5 9.2 1.7 168 chr2R 24592912 intron pio + chr2R 24592996 intron pio + chr2R 24593080 intron pio + chr2R_17_24590001 chr2R_24590001 RAL-223 1538 chr2R 24592941 24592975 chr2R 24593042 24593118 18 134 6.0 5.0 5.5 2.8 177 chr2R 24592941 intron pio + chr2R 24593030 intron pio + chr2R 24593118 intron pio + chr2R_18_24590001 chr2R_24590001 RAL-223 1539 chr2R 24647546 24647615 chr2R 24655153 24655222 412 25 7605 10.5 9.5 10.0 2.3 7676 chr2R 24647546 intergenic not near genes chr2R 24651384 intergenic not near genes chr2R 24655222 intergenic not near genes chr2R_25_24650001 chr2R_24650001 RAL-223 1540 chr2R 24682029 24682105 chr2R 24682168 24682223 31 137 5.0 6.5 5.8 4.6 194 chr2R 24682029 intron Mmp1 - chr2R 24682126 intron Mmp1 - chr2R 24682223 exon Mmp1 - chr2R_31_24680001 chr2R_24680001 RAL-223 1541 chr2R 24727839 24727844 chr2R 24735397 24735402 mdg1 5 7558 14.5 9.0 11.8 0.4 7563 chr2R 24727839 intron Mid1 - chr2R 24731620 intron Mid1 - chr2R 24735402 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-223 1542 chr2R 24727845 24727917 chr2R 24735393 24735419 mdg1 28 7551 4.5 8.5 6.5 3.7 7574 chr2R 24727845 intron Mid1 - chr2R 24731632 intron Mid1 - chr2R 24735419 intron Mid1 - chr2R_28_24730001 chr2R_24730001 RAL-223 1543 chr2R 24763569 24763595 chr2R 24765594 24765604 G2 7 2021 16.0 7.0 11.5 0.6 2035 chr2R 24763569 exon CG3894 + chr2R 24764586 intron CG3894 + chr2R 24765604 exon CG3894 + chr2R_7_24760001 chr2R_24760001 RAL-223 1544 chr2R 24763597 24763631 chr2R 24765588 24765647 G2 10 2021 7.5 7.0 7.2 1.2 2050 chr2R 24763597 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765647 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-223 1545 chr2R 24846421 24846444 chr2R 24846554 24846561 8 128 22.5 10.5 16.5 0.5 140 chr2R 24846421 intergenic not near genes chr2R 24846491 intergenic not near genes chr2R 24846561 intergenic not near genes chr2R_8_24845001 chr2R_24845001 RAL-223 1546 chr2R 24859792 24859858 chr2R 24859928 24859994 28 135 9.0 0.0 4.5 5.1 202 chr2R 24859792 5` UTR CR44829 + chr2R 24859893 5` UTR CR44829 + chr2R 24859994 5` UTR CR44829 + chr2R_28_24855001 chr2R_24855001 RAL-223 1547 chr2R 24859861 24859864 chr2R 24859926 24860000 4 118 7.5 0.0 3.8 0.8 139 chr2R 24859861 5` UTR CR44829 + chr2R 24859930 5` UTR CR44829 + chr2R 24860000 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-223 1548 chr2R 24884006 24884007 chr2R 24884138 24884139 4 132 26.5 7.0 16.8 0.2 133 chr2R 24884006 intron NKAIN + chr2R 24884072 intron NKAIN + chr2R 24884139 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-223 1549 chr2R 24884010 24884079 chr2R 24884137 24884211 33 132 7.5 7.0 7.2 4.0 201 chr2R 24884010 intron NKAIN + chr2R 24884110 intron NKAIN + chr2R 24884211 intron NKAIN + chr2R_33_24880001 chr2R_24880001 RAL-223 1550 chr2R 25004846 25004903 chr2R 25004974 25005031 26 128 8.5 10.0 9.2 2.5 185 chr2R 25004846 intron zip - chr2R 25004938 intron zip - chr2R 25005031 intron zip - chr2R_26_25000001 chr2R_25000001 RAL-223 1551 chr2R 25014503 25014571 chr2R 25014627 25014697 11 120 9.5 8.0 8.8 1.1 194 chr2R 25014503 intron uzip + chr2R 25014600 intron uzip + chr2R 25014697 intron uzip + chr2R_11_25010001 chr2R_25010001 RAL-223 1552 chr2R 25018296 25018367 chr2R 25018447 25018518 37 149 5.5 6.5 6.0 5.3 222 chr2R 25018296 intron uzip + chr2R 25018407 intron uzip + chr2R 25018518 intron uzip + chr2R_37_25015001 chr2R_25015001 RAL-223 1553 chr2R 25022599 25022664 chr2R 25022733 25022798 32 134 10.5 12.5 11.5 2.6 199 chr2R 25022599 intron uzip + chr2R 25022698 intron uzip + chr2R 25022798 intron uzip + chr2R_32_25020001 chr2R_25020001 RAL-223 1554 chr2R 25053098 25053117 chr2R 25053226 25053245 4 128 15.0 9.5 12.2 0.3 147 chr2R 25053098 intergenic not near genes chr2R 25053172 intergenic not near genes chr2R 25053245 intergenic not near genes chr2R_4_25050001 chr2R_25050001 RAL-223 1555 chr2R 25061953 25062009 chr2R 25062082 25062138 20 129 5.0 8.0 6.5 2.7 185 chr2R 25061953 intergenic gsb + chr2R 25062046 5` UTR gsb + chr2R 25062138 5` UTR gsb + chr2R_20_25060001 chr2R_25060001 RAL-223 1556 chr2R 25076482 25076487 chr2R 25076644 25076649 4 162 20.0 42.0 31.0 0.1 167 chr2R 25076482 intron gol - chr2R 25076566 intron gol - chr2R 25076649 intron gol - chr2R_4_25075001 chr2R_25075001 RAL-223 1557 chr2R 25076522 25076530 chr2R 25076652 25076660 4 130 22.5 41.0 31.8 0.1 138 chr2R 25076522 intron gol - chr2R 25076591 intron gol - chr2R 25076660 intron gol - chr2R_4_25075001 chr2R_25075001 RAL-223 1558 chr2R 25080285 25080340 chr2R 25080701 25080759 13 423 3.5 7.5 5.5 2.0 474 chr2R 25080285 intron gol - chr2R 25080522 intron gol - chr2R 25080759 intron gol - chr2R_13_25080001 chr2R_25080001 RAL-223 1559 chr2R 25081574 25081631 chr2R 25082720 25082777 28 1145 7.0 14.0 10.5 2.4 1203 chr2R 25081574 intron gol - chr2R 25082176 intron gol - chr2R 25082777 intron gol - chr2R_28_25080001 chr2R_25080001 RAL-223 1560 chr2R 25101229 25101299 chr2R 25101381 25101451 30 151 7.5 6.5 7.0 3.8 222 chr2R 25101229 intron lov - chr2R 25101340 intron lov - chr2R 25101451 intron lov - chr2R_30_25100001 chr2R_25100001 RAL-223 1561 chr2R 25122919 25122992 chr2R 25123048 25123121 24 129 4.0 10.0 7.0 3.0 202 chr2R 25122919 intron lov - chr2R 25123020 intron lov - chr2R 25123121 intron lov - chr2R_24_25120001 chr2R_25120001 RAL-223 1562 chr2R 25141611 25141677 chr2R 25159351 25159417 roo 29 17739 9.5 11.0 10.2 2.6 17806 chr2R 25141611 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159417 intergenic not near genes chr2R_29_25150001 chr2R_25150001 RAL-223 1563 chr2R 25180712 25180793 chr2R 25180841 25180920 19 128 9.0 3.0 6.0 2.7 208 chr2R 25180712 intergenic not near genes chr2R 25180816 intergenic not near genes chr2R 25180920 intergenic not near genes chr2R_19_25180001 chr2R_25180001 RAL-223 1564 chr2R 25181056 25181126 chr2R 25181203 25181273 21 146 9.0 7.5 8.2 2.3 217 chr2R 25181056 intergenic not near genes chr2R 25181164 intergenic not near genes chr2R 25181273 intergenic not near genes chr2R_21_25180001 chr2R_25180001 RAL-223 1565 chr2R 25191679 25191720 chr2R 25191807 25191848 12 128 5.5 7.0 6.2 1.7 169 chr2R 25191679 intron CG9380 - chr2R 25191764 intron CG9380 - chr2R 25191848 intron CG9380 - chr2R_12_25190001 chr2R_25190001 RAL-223 1566 chr2R 25193293 25193370 chr2R 25193485 25193564 22 193 3.0 6.5 4.8 3.8 271 chr2R 25193293 intron CG9380 - chr2R 25193428 intron CG9380 - chr2R 25193564 intron CG9380 - chr2R_22_25190001 chr2R_25190001 RAL-223 1567 chr2R 25235980 25236045 chr2R 25236142 25236206 22 161 5.0 5.0 5.0 3.7 226 chr2R 25235980 intron CG9380 - chr2R 25236093 intron CG9380 - chr2R 25236206 intron CG9380 - chr2R_22_25235001 chr2R_25235001 RAL-223 1568 chr2R 25253403 25253472 chr2R 25253529 25253599 15 127 6.0 8.0 7.0 1.9 196 chr2R 25253403 intron,intron CG9380 -,CG30428 + chr2R 25253501 intron,intron CG9380 -,CG30428 + chr2R 25253599 intron,5` UTR CG9380 -,CG30428 + chr2R_15_25250001 chr2R_25250001 RAL-223 1569 chr3L 110166 110238 chr3L 119383 119455 roo 22 9217 6.0 10.5 8.2 2.4 9289 chr3L 110166 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119455 intergenic not near genes chr3L_22_110001 chr3L_110001 RAL-223 1570 chr3L 137038 137111 chr3L 137418 137491 35 379 10.0 9.5 9.8 3.2 453 chr3L 137038 intron Pdk1 + chr3L 137264 intron Pdk1 + chr3L 137491 intron Pdk1 + chr3L_35_135001 chr3L_135001 RAL-223 1571 chr3L 160180 160257 chr3L 160332 160409 29 151 7.5 7.0 7.2 3.5 229 chr3L 160180 intron p130CAS + chr3L 160294 intron p130CAS + chr3L 160409 intron p130CAS + chr3L_29_160001 chr3L_160001 RAL-223 1572 chr3L 375199 375278 chr3L 375335 375412 10 134 1.0 9.5 5.2 1.6 213 chr3L 375199 intron trh - chr3L 375306 intron trh - chr3L 375412 intron trh - chr3L_10_375001 chr3L_375001 RAL-223 1573 chr3L 382951 382952 chr3L 383096 383102 4 149 21.0 9.0 15.0 0.2 151 chr3L 382951 intron trh - chr3L 383026 intron trh - chr3L 383102 intron trh - chr3L_4_380001 chr3L_380001 RAL-223 1574 chr3L 382955 383019 chr3L 383094 383168 27 147 6.5 8.0 7.2 3.3 213 chr3L 382955 intron trh - chr3L 383062 intron trh - chr3L 383168 intron trh - chr3L_27_380001 chr3L_380001 RAL-223 1575 chr3L 402654 402710 chr3L 409751 409813 297 30 7103 7.5 13.5 10.5 2.6 7159 chr3L 402654 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409813 intergenic not near genes chr3L_30_405001 chr3L_405001 RAL-223 1576 chr3L 421009 421025 chr3L 421155 421170 8 145 21.5 10.5 16.0 0.5 161 chr3L 421009 intergenic not near genes chr3L 421090 intergenic not near genes chr3L 421170 intergenic not near genes chr3L_8_420001 chr3L_420001 RAL-223 1577 chr3L 421026 421077 chr3L 421149 421186 19 142 13.0 9.5 11.2 1.6 160 chr3L 421026 intergenic not near genes chr3L 421106 intergenic not near genes chr3L 421186 intergenic not near genes chr3L_19_420001 chr3L_420001 RAL-223 1578 chr3L 524692 524776 chr3L 524826 524908 20 132 0.0 4.5 2.2 6.2 216 chr3L 524692 intron klar - chr3L 524800 intron klar - chr3L 524908 intron klar - chr3L_20_520001 chr3L_520001 RAL-223 1579 chr3L 535004 535075 chr3L 535136 535207 29 130 10.0 7.0 8.5 3.1 203 chr3L 535004 intron klar - chr3L 535106 intron klar - chr3L 535207 intron klar - chr3L_29_535001 chr3L_535001 RAL-223 1580 chr3L 592924 592969 chr3L 593050 593085 17 125 8.5 8.5 8.5 1.8 161 chr3L 592924 intergenic MED14 + chr3L 593004 intergenic MED14 + chr3L 593085 intergenic MED14 + chr3L_17_590001 chr3L_590001 RAL-223 1581 chr3L 603014 603034 chr3L 603137 603167 7 132 12.5 0.0 6.2 1.0 153 chr3L 603014 intron CG13893 - chr3L 603090 intron CG13893 - chr3L 603167 intron CG13893 - chr3L_7_600001 chr3L_600001 RAL-223 1582 chr3L 642431 642492 chr3L 642572 642632 28 139 1.0 12.0 6.5 3.7 201 chr3L 642431 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642632 5` UTR CR43334 + chr3L_28_640001 chr3L_640001 RAL-223 1583 chr3L 650033 650105 chr3L 650173 650245 35 140 7.5 6.5 7.0 4.4 212 chr3L 650033 intron Gale + chr3L 650139 intron Gale + chr3L 650245 exon Gale + chr3L_35_650001 chr3L_650001 RAL-223 1584 chr3L 651349 651413 chr3L 651487 651551 24 137 9.5 12.0 10.8 2.0 202 chr3L 651349 intergenic Gale +,CG3402 - chr3L 651450 intergenic CG3402 -,Gale + chr3L 651551 3` UTR CG3402 - chr3L_24_650001 chr3L_650001 RAL-223 1585 chr3L 660107 660146 chr3L 660249 660284 roo 12 140 9.0 15.0 12.0 0.9 177 chr3L 660107 intergenic not near genes chr3L 660196 intergenic not near genes chr3L 660284 intergenic not near genes chr3L_12_660001 chr3L_660001 RAL-223 1586 chr3L 670013 670039 chr3L 670141 670155 10 127 5.5 8.0 6.8 1.3 142 chr3L 670013 intergenic not near genes chr3L 670084 intergenic not near genes chr3L 670155 intergenic not near genes chr3L_10_670001 chr3L_670001 RAL-223 1587 chr3L 713417 713447 chr3L 713544 713554 5 123 10.0 9.5 9.8 0.5 137 chr3L 713417 intergenic not near genes chr3L 713486 intergenic not near genes chr3L 713554 intergenic not near genes chr3L_5_710001 chr3L_710001 RAL-223 1588 chr3L 720831 720901 chr3L 720962 721042 19 138 5.5 4.0 4.8 3.3 211 chr3L 720831 intergenic not near genes chr3L 720936 intergenic not near genes chr3L 721042 intergenic not near genes chr3L_19_720001 chr3L_720001 RAL-223 1589 chr3L 732771 732846 chr3L 733043 733118 52 271 6.0 5.5 5.8 7.6 347 chr3L 732771 intergenic not near genes chr3L 732944 intergenic not near genes chr3L 733118 intergenic not near genes chr3L_52_730001 chr3L_730001 RAL-223 1590 chr3L 768344 768414 chr3L 768489 768559 24 145 2.0 5.5 3.8 5.0 215 chr3L 768344 intergenic not near genes chr3L 768452 intergenic not near genes chr3L 768559 intergenic not near genes chr3L_24_765001 chr3L_765001 RAL-223 1591 chr3L 789871 789931 chr3L 790399 790459 roo 15 528 0.0 0.0 0.0 15.0 588 chr3L 789871 intergenic not near genes chr3L 790165 intergenic not near genes chr3L 790459 intergenic not near genes chr3L_15_790001 chr3L_790001 RAL-223 1592 chr3L 822058 822073 chr3L 822188 822202 7 130 0.5 17.0 8.8 0.7 144 chr3L 822058 intergenic not near genes chr3L 822130 intergenic not near genes chr3L 822202 intergenic not near genes chr3L_7_820001 chr3L_820001 RAL-223 1593 chr3L 857958 858026 chr3L 866488 866525 Tirant 30 8524 9.5 6.5 8.0 3.3 8567 chr3L 857958 intergenic not near genes chr3L 862242 intergenic not near genes chr3L 866525 5` UTR CG12502 + chr3L_30_860001 chr3L_860001 RAL-223 1594 chr3L 925130 925201 chr3L 932606 932677 mdg1 36 7476 6.5 8.0 7.2 4.4 7547 chr3L 925130 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932677 intron Glut1 + chr3L_36_925001 chr3L_925001 RAL-223 1595 chr3L 933858 933937 chr3L 934012 934090 21 154 4.5 9.5 7.0 2.6 232 chr3L 933858 intron Glut1 + chr3L 933974 intron Glut1 + chr3L 934090 intron Glut1 + chr3L_21_930001 chr3L_930001 RAL-223 1596 chr3L 939730 939769 chr3L 940901 940940 jockey 16 1171 10.0 9.0 9.5 1.5 1210 chr3L 939730 intron Glut1 + chr3L 940335 intron Glut1 + chr3L 940940 intron Glut1 + chr3L_16_940001 chr3L_940001 RAL-223 1597 chr3L 939770 939795 chr3L 940897 940966 jockey 11 1167 8.0 8.5 8.2 1.2 1196 chr3L 939770 intron Glut1 + chr3L 940368 intron Glut1 + chr3L 940966 intron Glut1 + chr3L_11_940001 chr3L_940001 RAL-223 1598 chr3L 960967 961041 chr3L 961110 961184 27 143 5.0 7.5 6.2 3.8 217 chr3L 960967 intron Glut1 + chr3L 961076 intron Glut1 + chr3L 961184 intron Glut1 + chr3L_27_960001 chr3L_960001 RAL-223 1599 chr3L 1003008 1003079 chr3L 1003129 1003206 41 126 10.0 12.0 11.0 3.4 198 chr3L 1003008 intron trio - chr3L 1003107 intron trio - chr3L 1003206 intron trio - chr3L_41_1000001 chr3L_1000001 RAL-223 1600 chr3L 1015106 1015159 chr3L 1015245 1015285 10 135 0.5 7.5 4.0 2.0 179 chr3L 1015106 intron trio - chr3L 1015196 intron trio - chr3L 1015285 intron trio - chr3L_10_1015001 chr3L_1015001 RAL-223 1601 chr3L 1021836 1021870 chr3L 1021979 1022013 7 143 4.5 0.0 2.2 2.2 177 chr3L 1021836 intron trio - chr3L 1021924 intron trio - chr3L 1022013 intron trio - chr3L_7_1020001 chr3L_1020001 RAL-223 1602 chr3L 1031535 1031600 chr3L 1031661 1031716 22 121 13.0 9.5 11.2 1.8 181 chr3L 1031535 intron trio - chr3L 1031626 intron trio - chr3L 1031716 intron trio - chr3L_22_1030001 chr3L_1030001 RAL-223 1603 chr3L 1033324 1033327 chr3L 1033470 1033473 4 146 0.0 0.0 0.0 4.0 149 chr3L 1033324 intron trio - chr3L 1033398 intron trio - chr3L 1033473 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-223 1604 chr3L 1040499 1040569 chr3L 1040633 1040703 28 133 14.5 4.0 9.2 2.7 204 chr3L 1040499 intron bab1 - chr3L 1040601 intron bab1 - chr3L 1040703 intron bab1 - chr3L_28_1040001 chr3L_1040001 RAL-223 1605 chr3L 1047315 1047379 chr3L 1055177 1055211 412 20 7858 9.0 8.5 8.8 2.0 7896 chr3L 1047315 intron bab1 - chr3L 1051263 intron bab1 - chr3L 1055211 intron bab1 - chr3L_20_1050001 chr3L_1050001 RAL-223 1606 chr3L 1103967 1104014 chr3L 1104208 1104255 23 241 6.0 12.5 9.2 2.3 288 chr3L 1103967 intergenic not near genes chr3L 1104111 intergenic not near genes chr3L 1104255 intergenic not near genes chr3L_23_1100001 chr3L_1100001 RAL-223 1607 chr3L 1154088 1154153 chr3L 1163288 1163353 roo 30 9199 11.0 10.5 10.8 2.5 9265 chr3L 1154088 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163353 intron bab2 - chr3L_30_1155001 chr3L_1155001 RAL-223 1608 chr3L 1180611 1180666 chr3L 1180986 1181041 25 374 11.0 9.5 10.2 2.2 430 chr3L 1180611 intergenic not near genes chr3L 1180826 intergenic not near genes chr3L 1181041 intergenic not near genes chr3L_25_1180001 chr3L_1180001 RAL-223 1609 chr3L 1182872 1182941 chr3L 1183015 1183084 23 143 7.5 1.0 4.2 4.4 212 chr3L 1182872 intergenic not near genes chr3L 1182978 intergenic not near genes chr3L 1183084 intergenic not near genes chr3L_23_1180001 chr3L_1180001 RAL-223 1610 chr3L 1195349 1195380 chr3L 1195603 1195613 13 252 0.0 0.0 0.0 13.0 264 chr3L 1195349 intergenic LysX - chr3L 1195481 intergenic LysX - chr3L 1195613 intergenic LysX - chr3L_13_1195001 chr3L_1195001 RAL-223 1611 chr3L 1219555 1219614 chr3L 1227338 1227397 412 37 7782 10.5 17.5 14.0 2.5 7842 chr3L 1219555 intron mwh + chr3L 1223476 intron mwh + chr3L 1227397 intron mwh + chr3L_37_1220001 chr3L_1220001 RAL-223 1612 chr3L 1274410 1274423 chr3L 1274628 1274641 10 218 9.0 2.5 5.8 1.5 231 chr3L 1274410 3` UTR CG9134 + chr3L 1274526 intergenic CG9134 + chr3L 1274641 intergenic CG9134 + chr3L_10_1270001 chr3L_1270001 RAL-223 1613 chr3L 1274464 1274486 chr3L 1274678 1274700 11 214 6.0 14.0 10.0 1.0 236 chr3L 1274464 3` UTR CG9134 + chr3L 1274582 intergenic CG9134 + chr3L 1274700 intergenic CG9134 + chr3L_11_1270001 chr3L_1270001 RAL-223 1614 chr3L 1285048 1285119 chr3L 1285174 1285250 29 127 4.0 7.5 5.8 4.3 202 chr3L 1285048 exon CG32333 + chr3L 1285149 intron CG32333 + chr3L 1285250 intron CG32333 + chr3L_29_1285001 chr3L_1285001 RAL-223 1615 chr3L 1314972 1315046 chr3L 1315521 1315595 27 548 46.0 42.0 44.0 0.6 623 chr3L 1314972 exon CG9153 + chr3L 1315284 exon CG9153 + chr3L 1315595 exon CG9153 + chr3L_27_1315001 chr3L_1315001 RAL-223 1616 chr3L 1310983 1311023 chr3L 1315794 1315833 11 4810 46.0 65.5 55.8 0.2 4850 chr3L 1310983 exon CG2469 + chr3L 1313408 intergenic CG9186 -,CG9153 + chr3L 1315833 exon CG9153 + chr3L_11_1310001 chr3L_1310001 RAL-223 1617 chr3L 1310981 1311036 chr3L 1315836 1315873 18 4821 49.5 58.0 53.8 0.3 4892 chr3L 1310981 exon CG2469 + chr3L 1313427 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_18_1310001 chr3L_1310001 RAL-223 1618 chr3L 1321517 1321590 chr3L 1321767 1321840 35 250 7.5 11.5 9.5 3.3 323 chr3L 1321517 intron Myo61F + chr3L 1321678 intron Myo61F + chr3L 1321840 intron,3` UTR Myo61F +,CG9184 - chr3L_35_1320001 chr3L_1320001 RAL-223 1619 chr3L 1323795 1323867 chr3L 1323927 1324007 28 137 0.5 9.0 4.8 4.8 212 chr3L 1323795 intron,intron Myo61F +,CR45166 - chr3L 1323901 intron,intron Myo61F +,CR45166 - chr3L 1324007 intron,3` UTR Myo61F +,CR45166 - chr3L_28_1320001 chr3L_1320001 RAL-223 1620 chr3L 1324584 1324647 chr3L 1324703 1324775 16 127 11.0 2.5 6.8 2.1 191 chr3L 1324584 intron Myo61F + chr3L 1324680 intron Myo61F + chr3L 1324775 intron Myo61F + chr3L_16_1320001 chr3L_1320001 RAL-223 1621 chr3L 1342896 1342958 chr3L 1343040 1343102 27 144 11.0 7.0 9.0 2.7 206 chr3L 1342896 3` UTR Ptp61F - chr3L 1342999 3` UTR Ptp61F - chr3L 1343102 3` UTR Ptp61F - chr3L_27_1340001 chr3L_1340001 RAL-223 1622 chr3L 1356971 1357009 chr3L 1357092 1357136 17 126 19.0 20.5 19.8 0.8 165 chr3L 1356971 intron Ptp61F - chr3L 1357054 intron Ptp61F - chr3L 1357136 intron Ptp61F - chr3L_17_1355001 chr3L_1355001 RAL-223 1623 chr3L 1360485 1360499 chr3L 1360907 1360938 6 434 4.0 11.0 7.5 0.7 453 chr3L 1360485 intron Ptp61F - chr3L 1360712 intron Ptp61F - chr3L 1360938 intron Ptp61F - chr3L_6_1360001 chr3L_1360001 RAL-223 1624 chr3L 1363986 1364065 chr3L 1364122 1364201 14 136 4.5 6.5 5.5 2.2 215 chr3L 1363986 intron Ptp61F - chr3L 1364094 intron Ptp61F - chr3L 1364201 intron Ptp61F - chr3L_14_1360001 chr3L_1360001 RAL-223 1625 chr3L 1396699 1396757 chr3L 1396832 1396891 26 133 15.0 14.0 14.5 1.7 192 chr3L 1396699 intron Ptp61F - chr3L 1396795 intron Ptp61F - chr3L 1396891 intron Ptp61F - chr3L_26_1395001 chr3L_1395001 RAL-223 1626 chr3L 1424762 1424769 chr3L 1430064 1430071 Rt1a 4 5302 0.0 17.0 8.5 0.4 5309 chr3L 1424762 intron Ptp61F - chr3L 1427416 intron Ptp61F - chr3L 1430071 intron Ptp61F - chr3L_4_1425001 chr3L_1425001 RAL-223 1627 chr3L 1473193 1473232 chr3L 1473319 1473352 12 125 9.0 15.5 12.2 0.9 159 chr3L 1473193 5` UTR Ptp61F - chr3L 1473272 5` UTR Ptp61F - chr3L 1473352 5` UTR Ptp61F - chr3L_12_1470001 chr3L_1470001 RAL-223 1628 chr3L 1485687 1485733 chr3L 1486908 1486954 1360 20 1220 11.5 12.0 11.8 1.6 1267 chr3L 1485687 intron stet - chr3L 1486320 intron stet - chr3L 1486954 intron stet - chr3L_20_1485001 chr3L_1485001 RAL-223 1629 chr3L 1501960 1501975 chr3L 1502091 1502106 7 131 3.0 5.0 4.0 1.4 146 chr3L 1501960 intron pUf68 - chr3L 1502033 intron pUf68 - chr3L 1502106 intron pUf68 - chr3L_7_1500001 chr3L_1500001 RAL-223 1630 chr3L 1501981 1502017 chr3L 1502087 1502148 14 126 3.0 4.5 3.8 2.9 167 chr3L 1501981 intron pUf68 - chr3L 1502064 intron pUf68 - chr3L 1502148 intron pUf68 - chr3L_14_1500001 chr3L_1500001 RAL-223 1631 chr3L 1505959 1506021 chr3L 1513606 1513668 17.6 25 7647 9.5 8.5 9.0 2.5 7709 chr3L 1505959 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513668 intron,intron Psa +,cue - chr3L_25_1505001 chr3L_1505001 RAL-223 1632 chr3L 1563310 1563377 chr3L 1563570 1563637 30 260 11.0 11.0 11.0 2.5 327 chr3L 1563310 intron CG7879 - chr3L 1563474 intron CG7879 - chr3L 1563637 intron CG7879 - chr3L_30_1560001 chr3L_1560001 RAL-223 1633 chr3L 1571421 1571493 chr3L 1571556 1571629 15 136 4.5 4.0 4.2 2.9 208 chr3L 1571421 intron CG12004 + chr3L 1571525 intron CG12004 + chr3L 1571629 intron CG12004 + chr3L_15_1570001 chr3L_1570001 RAL-223 1634 chr3L 1631020 1631035 chr3L 1631147 1631162 6 126 16.0 14.5 15.2 0.4 142 chr3L 1631020 3` UTR nSyb - chr3L 1631091 3` UTR nSyb - chr3L 1631162 3` UTR nSyb - chr3L_6_1630001 chr3L_1630001 RAL-223 1635 chr3L 1631042 1631059 chr3L 1631141 1631186 14 121 13.5 13.0 13.2 1.0 144 chr3L 1631042 3` UTR nSyb - chr3L 1631114 3` UTR nSyb - chr3L 1631186 3` UTR nSyb - chr3L_14_1630001 chr3L_1630001 RAL-223 1636 chr3L 1683971 1684035 chr3L 1684098 1684163 8 118 4.0 3.5 3.8 1.7 192 chr3L 1683971 intron CG7991 + chr3L 1684067 intron CG7991 + chr3L 1684163 intron CG7991 + chr3L_8_1680001 chr3L_1680001 RAL-223 1637 chr3L 1688415 1688433 chr3L 1688551 1688569 6 136 7.5 13.0 10.2 0.5 154 chr3L 1688415 intron CG7991 + chr3L 1688492 intron CG7991 + chr3L 1688569 intron CG7991 + chr3L_6_1685001 chr3L_1685001 RAL-223 1638 chr3L 1728467 1728545 chr3L 1728602 1728680 26 134 8.0 8.5 8.2 2.8 213 chr3L 1728467 intron drpr - chr3L 1728574 intron drpr - chr3L 1728680 intron drpr - chr3L_26_1725001 chr3L_1725001 RAL-223 1639 chr3L 1740815 1740877 chr3L 1741103 1741170 pogo 26 291 14.0 12.5 13.2 1.8 355 chr3L 1740815 intron Gk + chr3L 1740992 intron Gk + chr3L 1741170 intron Gk + chr3L_26_1740001 chr3L_1740001 RAL-223 1640 chr3L 1754643 1754715 chr3L 1754812 1754884 40 168 9.0 9.0 9.0 4.0 241 chr3L 1754643 intron Cht2 - chr3L 1754764 intron Cht2 - chr3L 1754884 intron Cht2 - chr3L_40_1750001 chr3L_1750001 RAL-223 1641 chr3L 1805652 1805707 chr3L 1805876 1805931 33 223 9.0 7.5 8.2 3.6 279 chr3L 1805652 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805931 intron CG42676 + chr3L_33_1805001 chr3L_1805001 RAL-223 1642 chr3L 1841527 1841582 chr3L 1841662 1841717 25 135 5.5 6.0 5.8 3.7 190 chr3L 1841527 intron Cpr62Bc - chr3L 1841622 intron Cpr62Bc - chr3L 1841717 intron Cpr62Bc - chr3L_25_1840001 chr3L_1840001 RAL-223 1643 chr3L 1853027 1853054 chr3L 1853154 1853181 10 127 7.5 16.5 12.0 0.8 154 chr3L 1853027 intron CG13936 - chr3L 1853104 intron CG13936 - chr3L 1853181 intron CG13936 - chr3L_10_1850001 chr3L_1850001 RAL-223 1644 chr3L 1882316 1882380 chr3L 1882462 1882524 11 144 7.0 2.0 4.5 2.0 208 chr3L 1882316 intron CG13937 - chr3L 1882420 intron CG13937 - chr3L 1882524 intron CG13937 - chr3L_11_1880001 chr3L_1880001 RAL-223 1645 chr3L 1922406 1922433 chr3L 1922536 1922563 12 127 14.5 12.5 13.5 0.8 157 chr3L 1922406 intron Dbx + chr3L 1922484 intron Dbx + chr3L 1922563 intron Dbx + chr3L_12_1920001 chr3L_1920001 RAL-223 1646 chr3L 1922437 1922450 chr3L 1922522 1922586 6 119 11.5 11.5 11.5 0.5 149 chr3L 1922437 intron Dbx + chr3L 1922512 intron Dbx + chr3L 1922586 intron Dbx + chr3L_6_1920001 chr3L_1920001 RAL-223 1647 chr3L 2000613 2000622 chr3L 2000759 2000775 5 152 0.0 16.5 8.2 0.5 162 chr3L 2000613 intergenic not near genes chr3L 2000694 intergenic not near genes chr3L 2000775 intergenic not near genes chr3L_5_2000001 chr3L_2000001 RAL-223 1648 chr3L 2065570 2065623 chr3L 2069717 2069773 4 4149 51.0 42.0 46.5 0.1 4203 chr3L 2065570 exon sls - chr3L 2067672 exon sls - chr3L 2069773 exon sls - chr3L_4_2065001 chr3L_2065001 RAL-223 1649 chr3L 2139160 2139234 chr3L 2139291 2139365 26 131 7.0 7.0 7.0 3.2 205 chr3L 2139160 intron zormin - chr3L 2139262 intron zormin - chr3L 2139365 intron zormin - chr3L_26_2135001 chr3L_2135001 RAL-223 1650 chr3L 2143866 2143927 chr3L 2143996 2144057 16 130 0.0 7.5 3.8 3.3 191 chr3L 2143866 intron zormin - chr3L 2143962 intron zormin - chr3L 2144057 intron zormin - chr3L_16_2140001 chr3L_2140001 RAL-223 1651 chr3L 2168729 2168797 chr3L 2168870 2168938 35 140 7.0 11.0 9.0 3.5 209 chr3L 2168729 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168938 intron CG15879 - chr3L_35_2165001 chr3L_2165001 RAL-223 1652 chr3L 2277934 2278001 chr3L 2278180 2278247 28 246 8.0 11.5 9.8 2.6 313 chr3L 2277934 3` UTR yellow-g2 + chr3L 2278090 intergenic yellow-g2 + chr3L 2278247 intergenic yellow-g2 + chr3L_28_2275001 chr3L_2275001 RAL-223 1653 chr3L 2301890 2301955 chr3L 2302020 2302085 26 129 7.0 10.0 8.5 2.7 195 chr3L 2301890 intergenic not near genes chr3L 2301988 intergenic not near genes chr3L 2302085 intergenic not near genes chr3L_26_2300001 chr3L_2300001 RAL-223 1654 chr3L 2307966 2308027 chr3L 2308122 2308183 24 156 13.0 9.0 11.0 2.0 217 chr3L 2307966 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308183 intergenic not near genes chr3L_24_2305001 chr3L_2305001 RAL-223 1655 chr3L 2331537 2331608 chr3L 2331664 2331721 36 127 8.5 8.5 8.5 3.8 184 chr3L 2331537 intron MsR1 + chr3L 2331629 intron MsR1 + chr3L 2331721 intron MsR1 + chr3L_36_2330001 chr3L_2330001 RAL-223 1656 chr3L 2355398 2355460 chr3L 2355634 2355698 15 234 7.5 0.0 3.8 3.1 300 chr3L 2355398 intergenic not near genes chr3L 2355548 intergenic not near genes chr3L 2355698 intergenic not near genes chr3L_15_2355001 chr3L_2355001 RAL-223 1657 chr3L 2411295 2411344 chr3L 2411425 2411474 15 124 1.5 9.0 5.2 2.4 179 chr3L 2411295 intron CG45186 + chr3L 2411384 intron CG45186 + chr3L 2411474 intron CG45186 + chr3L_15_2410001 chr3L_2410001 RAL-223 1658 chr3L 2447458 2447526 chr3L 2456664 2456732 roo 40 9204 11.0 12.5 11.8 3.1 9274 chr3L 2447458 intron CG45186 + chr3L 2452095 intron CG45186 + chr3L 2456732 intron CG45186 + chr3L_40_2450001 chr3L_2450001 RAL-223 1659 chr3L 2467405 2467485 chr3L 2467552 2467641 11 153 4.5 0.0 2.2 3.4 236 chr3L 2467405 intron CG45186 + chr3L 2467523 intron CG45186 + chr3L 2467641 intron CG45186 + chr3L_11_2465001 chr3L_2465001 RAL-223 1660 chr3L 2493774 2493846 chr3L 2493902 2493984 14 135 5.5 0.0 2.8 3.7 210 chr3L 2493774 intron CG45186 + chr3L 2493879 intron CG45186 + chr3L 2493984 intron CG45186 + chr3L_14_2490001 chr3L_2490001 RAL-223 1661 chr3L 2500725 2500798 chr3L 2500852 2500924 15 126 7.5 9.5 8.5 1.6 199 chr3L 2500725 intron CG16758 - chr3L 2500824 intron CG16758 - chr3L 2500924 intron CG16758 - chr3L_15_2500001 chr3L_2500001 RAL-223 1662 chr3L 2515362 2515382 chr3L 2515496 2515516 5 134 13.0 17.5 15.2 0.3 154 chr3L 2515362 intron Spn - chr3L 2515439 intron Spn - chr3L 2515516 intron Spn - chr3L_5_2515001 chr3L_2515001 RAL-223 1663 chr3L 2515400 2515416 chr3L 2515532 2515548 6 132 6.5 24.0 15.2 0.4 148 chr3L 2515400 intron Spn - chr3L 2515474 intron Spn - chr3L 2515548 intron Spn - chr3L_6_2515001 chr3L_2515001 RAL-223 1664 chr3L 2584056 2584128 chr3L 2584445 2584468 11 383 5.5 3.0 4.2 2.1 412 chr3L 2584056 intron msn - chr3L 2584262 intron msn - chr3L 2584468 intron msn - chr3L_11_2580001 chr3L_2580001 RAL-223 1665 chr3L 2617212 2617260 chr3L 2617348 2617396 19 136 6.0 6.5 6.2 2.6 184 chr3L 2617212 intron Pxn - chr3L 2617304 intron Pxn - chr3L 2617396 intron Pxn - chr3L_19_2615001 chr3L_2615001 RAL-223 1666 chr3L 2634265 2634305 chr3L 2634467 2634507 17 202 18.0 5.5 11.8 1.3 242 chr3L 2634265 intron,intron CG42245 +,MEP-1 + chr3L 2634386 intron,intron CG42245 +,MEP-1 + chr3L 2634507 intron,intron CG42245 +,MEP-1 + chr3L_17_2630001 chr3L_2630001 RAL-223 1667 chr3L 2683912 2683957 chr3L 2684055 2684100 20 143 10.5 6.0 8.2 2.2 188 chr3L 2683912 intron Fife - chr3L 2684006 intron Fife - chr3L 2684100 intron Fife - chr3L_20_2680001 chr3L_2680001 RAL-223 1668 chr3L 2710972 2711042 chr3L 2711119 2711189 13 147 5.5 7.0 6.2 1.8 217 chr3L 2710972 intron Fife - chr3L 2711080 intron Fife - chr3L 2711189 intron Fife - chr3L_13_2710001 chr3L_2710001 RAL-223 1669 chr3L 2719488 2719559 chr3L 2719640 2719711 26 152 13.0 9.0 11.0 2.2 223 chr3L 2719488 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719711 3` UTR Mrtf - chr3L_26_2715001 chr3L_2715001 RAL-223 1670 chr3L 2724127 2724138 chr3L 2724262 2724273 6 135 3.0 13.0 8.0 0.7 146 chr3L 2724127 intron Mrtf - chr3L 2724200 intron Mrtf - chr3L 2724273 intron Mrtf - chr3L_6_2720001 chr3L_2720001 RAL-223 1671 chr3L 2751413 2751458 chr3L 2755758 2755803 F-element 24 4345 7.0 17.5 12.2 1.8 4390 chr3L 2751413 intron Mrtf - chr3L 2753608 intron Mrtf - chr3L 2755803 intron Mrtf - chr3L_24_2750001 chr3L_2750001 RAL-223 1672 chr3L 2795671 2795739 chr3L 2795845 2795912 19 173 9.0 7.0 8.0 2.1 241 chr3L 2795671 intron CG43444 - chr3L 2795792 intron CG43444 - chr3L 2795912 intron CG43444 - chr3L_19_2795001 chr3L_2795001 RAL-223 1673 chr3L 2835824 2835859 chr3L 2835962 2835997 16 137 6.0 12.0 9.0 1.6 173 chr3L 2835824 intron CG43444 - chr3L 2835910 intron CG43444 - chr3L 2835997 intron CG43444 - chr3L_16_2835001 chr3L_2835001 RAL-223 1674 chr3L 2842633 2842706 chr3L 2842774 2842849 17 141 8.0 7.5 7.8 1.9 216 chr3L 2842633 intron CG43444 - chr3L 2842741 intron CG43444 - chr3L 2842849 intron CG43444 - chr3L_17_2840001 chr3L_2840001 RAL-223 1675 chr3L 2876290 2876328 chr3L 2876614 2876652 14 324 11.5 0.0 5.8 2.1 362 chr3L 2876290 intron CG43444 - chr3L 2876471 intron CG43444 - chr3L 2876652 intron CG43444 - chr3L_14_2875001 chr3L_2875001 RAL-223 1676 chr3L 2882073 2882142 chr3L 2882199 2882268 29 126 14.0 9.5 11.8 2.3 195 chr3L 2882073 intergenic not near genes chr3L 2882170 intergenic not near genes chr3L 2882268 intergenic not near genes chr3L_29_2880001 chr3L_2880001 RAL-223 1677 chr3L 2927795 2927860 chr3L 2936122 2936187 Tirant 23 8326 7.5 7.5 7.5 2.7 8392 chr3L 2927795 intron Shab + chr3L 2931991 intron Shab + chr3L 2936187 intron Shab + chr3L_23_2930001 chr3L_2930001 RAL-223 1678 chr3L 2965964 2966037 chr3L 2966096 2966169 36 132 8.0 7.0 7.5 4.2 205 chr3L 2965964 intergenic not near genes chr3L 2966066 intergenic not near genes chr3L 2966169 intergenic not near genes chr3L_36_2965001 chr3L_2965001 RAL-223 1679 chr3L 2966673 2966724 chr3L 2974150 2974204 mdg1 12 7479 13.5 2.0 7.8 1.4 7531 chr3L 2966673 intergenic not near genes chr3L 2970438 intergenic not near genes chr3L 2974204 intergenic not near genes chr3L_12_2970001 chr3L_2970001 RAL-223 1680 chr3L 2987680 2987751 chr3L 2987992 2988063 20 311 6.0 7.5 6.8 2.6 383 chr3L 2987680 intergenic not near genes chr3L 2987872 intergenic not near genes chr3L 2988063 intergenic not near genes chr3L_20_2985001 chr3L_2985001 RAL-223 1681 chr3L 3040281 3040351 chr3L 3042120 3042190 S-element 30 1838 13.0 8.5 10.8 2.5 1909 chr3L 3040281 3` UTR CG2162 + chr3L 3041236 intergenic not near genes chr3L 3042190 intergenic Jafrac2 + chr3L_30_3040001 chr3L_3040001 RAL-223 1682 chr3L 3050861 3050929 chr3L 3050998 3051066 16 137 6.0 8.0 7.0 2.0 205 chr3L 3050861 intron CG32485 + chr3L 3050964 intron CG32485 + chr3L 3051066 exon CG32485 + chr3L_16_3050001 chr3L_3050001 RAL-223 1683 chr3L 3051701 3051756 chr3L 3051993 3052051 pogo 16 292 9.5 8.5 9.0 1.6 350 chr3L 3051701 3` UTR CG32485 + chr3L 3051876 intergenic CG32485 + chr3L 3052051 intergenic CG32485 +,CG1271 + chr3L_16_3050001 chr3L_3050001 RAL-223 1684 chr3L 3061248 3061311 chr3L 3069870 3069926 Tirant 18 8622 7.0 5.0 6.0 2.6 8678 chr3L 3061248 intron CG32486 - chr3L 3065587 intron CG32486 - chr3L 3069926 intron CG32486 - chr3L_18_3065001 chr3L_3065001 RAL-223 1685 chr3L 3107233 3107270 chr3L 3107366 3107406 10 136 5.5 4.0 4.8 1.7 173 chr3L 3107233 intergenic Cht7 - chr3L 3107320 intergenic Cht7 - chr3L 3107406 intergenic Cht7 - chr3L_10_3105001 chr3L_3105001 RAL-223 1686 chr3L 3254041 3254117 chr3L 3254182 3254258 26 140 4.5 9.5 7.0 3.2 217 chr3L 3254041 5` UTR CR43626 + chr3L 3254150 5` UTR CR43626 + chr3L 3254258 5` UTR CR43626 + chr3L_26_3250001 chr3L_3250001 RAL-223 1687 chr3L 3269056 3269128 chr3L 3269197 3269269 18 141 0.5 8.0 4.2 3.5 213 chr3L 3269056 intergenic CG34265 + chr3L 3269162 intergenic CG34265 + chr3L 3269269 intergenic CG34265 + chr3L_18_3265001 chr3L_3265001 RAL-223 1688 chr3L 3281404 3281465 chr3L 3281945 3281999 Doc 30 538 14.5 11.0 12.8 2.2 595 chr3L 3281404 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281999 intron CG12017 + chr3L_30_3280001 chr3L_3280001 RAL-223 1689 chr3L 3317506 3317561 chr3L 3317635 3317690 26 129 1.0 17.5 9.2 2.5 184 chr3L 3317506 intergenic Drsl5 + chr3L 3317598 intergenic PIG-C -,Drsl5 + chr3L 3317690 intergenic PIG-C - chr3L_26_3315001 chr3L_3315001 RAL-223 1690 chr3L 3348026 3348096 chr3L 3348205 3348275 30 179 0.0 7.0 3.5 6.7 249 chr3L 3348026 intron kst + chr3L 3348150 intron kst + chr3L 3348275 intron kst + chr3L_30_3345001 chr3L_3345001 RAL-223 1691 chr3L 3392956 3393029 chr3L 3393081 3393151 16 130 3.5 1.5 2.5 4.6 195 chr3L 3392956 intergenic not near genes chr3L 3393054 intergenic not near genes chr3L 3393151 intergenic not near genes chr3L_16_3390001 chr3L_3390001 RAL-223 1692 chr3L 3422556 3422589 chr3L 3422691 3422726 9 131 11.5 4.5 8.0 1.0 170 chr3L 3422556 intron sty - chr3L 3422641 intron sty - chr3L 3422726 intron sty - chr3L_9_3420001 chr3L_3420001 RAL-223 1693 chr3L 3436239 3436315 chr3L 3436368 3436444 26 129 7.5 8.0 7.8 3.0 205 chr3L 3436239 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436444 intron eIF5B - chr3L_26_3435001 chr3L_3435001 RAL-223 1694 chr3L 3445879 3445942 chr3L 3446018 3446081 27 139 8.5 11.5 10.0 2.5 202 chr3L 3445879 intron eIF5B - chr3L 3445980 intron eIF5B - chr3L 3446081 intron eIF5B - chr3L_27_3445001 chr3L_3445001 RAL-223 1695 chr3L 3449217 3449235 chr3L 3449345 3449363 6 128 7.0 4.0 5.5 0.9 146 chr3L 3449217 intron eIF5B - chr3L 3449290 intron eIF5B - chr3L 3449363 intron eIF5B - chr3L_6_3445001 chr3L_3445001 RAL-223 1696 chr3L 3475027 3475055 chr3L 3475521 3475550 jockey 9 495 13.5 6.5 10.0 0.8 523 chr3L 3475027 intron CG42324 + chr3L 3475288 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-223 1697 chr3L 3486583 3486652 chr3L 3486699 3486778 23 123 2.5 4.0 3.2 5.5 195 chr3L 3486583 intron CG42324 + chr3L 3486680 intron CG42324 + chr3L 3486778 intron CG42324 + chr3L_23_3485001 chr3L_3485001 RAL-223 1698 chr3L 3494150 3494209 chr3L 3494277 3494336 19 127 0.0 2.5 1.2 8.6 186 chr3L 3494150 intron CG42324 + chr3L 3494243 intron CG42324 + chr3L 3494336 intron CG42324 + chr3L_19_3490001 chr3L_3490001 RAL-223 1699 chr3L 3503931 3503982 chr3L 3504079 3504139 18 150 4.5 6.0 5.2 2.9 208 chr3L 3503931 intron CG42324 + chr3L 3504035 intron CG42324 + chr3L 3504139 intron CG42324 + chr3L_18_3500001 chr3L_3500001 RAL-223 1700 chr3L 3581701 3581768 chr3L 3581836 3581903 33 135 12.0 0.0 6.0 4.7 202 chr3L 3581701 intron Eip63E + chr3L 3581802 intron Eip63E + chr3L 3581903 intron Eip63E + chr3L_33_3580001 chr3L_3580001 RAL-223 1701 chr3L 3601268 3601325 chr3L 3606629 3606686 copia 22 5361 7.0 9.0 8.0 2.4 5418 chr3L 3601268 intron Eip63E + chr3L 3603977 intron Eip63E + chr3L 3606686 intron Eip63E + chr3L_22_3600001 chr3L_3600001 RAL-223 1702 chr3L 3638222 3638283 chr3L 3638357 3638418 33 134 7.5 8.5 8.0 3.7 196 chr3L 3638222 intron dar1 + chr3L 3638320 intron dar1 + chr3L 3638418 intron dar1 + chr3L_33_3635001 chr3L_3635001 RAL-223 1703 chr3L 3642116 3642188 chr3L 3642272 3642344 21 156 7.5 5.5 6.5 2.8 228 chr3L 3642116 intron dar1 + chr3L 3642230 intron dar1 + chr3L 3642344 intron dar1 + chr3L_21_3640001 chr3L_3640001 RAL-223 1704 chr3L 3644070 3644081 chr3L 3644214 3644227 4 146 18.5 16.0 17.2 0.2 157 chr3L 3644070 intron dar1 + chr3L 3644148 intron dar1 + chr3L 3644227 intron dar1 + chr3L_4_3640001 chr3L_3640001 RAL-223 1705 chr3L 3700060 3700132 chr3L 3700193 3700265 37 132 11.0 9.5 10.2 3.3 205 chr3L 3700060 intergenic not near genes chr3L 3700162 intergenic not near genes chr3L 3700265 intergenic not near genes chr3L_37_3700001 chr3L_3700001 RAL-223 1706 chr3L 3753223 3753285 chr3L 3753366 3753428 24 140 9.0 8.0 8.5 2.5 205 chr3L 3753223 intron CG32264 - chr3L 3753326 intron CG32264 - chr3L 3753428 intron CG32264 - chr3L_24_3750001 chr3L_3750001 RAL-223 1707 chr3L 3761884 3761924 chr3L 3762429 3762469 17 545 11.0 0.5 5.8 2.5 585 chr3L 3761884 intron CG32264 - chr3L 3762176 intron CG32264 - chr3L 3762469 intron CG32264 - chr3L_17_3760001 chr3L_3760001 RAL-223 1708 chr3L 3763708 3763713 chr3L 3763839 3763844 5 131 18.5 0.5 9.5 0.5 136 chr3L 3763708 intron CG32264 - chr3L 3763776 intron CG32264 - chr3L 3763844 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-223 1709 chr3L 3766692 3766761 chr3L 3766828 3766897 23 136 5.0 3.0 4.0 4.6 205 chr3L 3766692 intron CG32264 - chr3L 3766794 intron CG32264 - chr3L 3766897 intron CG32264 - chr3L_23_3765001 chr3L_3765001 RAL-223 1710 chr3L 3772172 3772240 chr3L 3772305 3772373 21 131 5.0 7.5 6.2 2.9 201 chr3L 3772172 intron CG32264 - chr3L 3772272 intron CG32264 - chr3L 3772373 intron CG32264 - chr3L_21_3770001 chr3L_3770001 RAL-223 1711 chr3L 3783220 3783290 chr3L 3783347 3783417 16 127 5.5 6.5 6.0 2.3 197 chr3L 3783220 intron CG32264 - chr3L 3783318 intron CG32264 - chr3L 3783417 intron CG32264 - chr3L_16_3780001 chr3L_3780001 RAL-223 1712 chr3L 3797193 3797262 chr3L 3797326 3797395 11 133 0.0 7.0 3.5 2.4 202 chr3L 3797193 intron CG32264 - chr3L 3797294 intron CG32264 - chr3L 3797395 intron CG32264 - chr3L_11_3795001 chr3L_3795001 RAL-223 1713 chr3L 3815001 3815078 chr3L 3815132 3815209 18 131 6.5 8.5 7.5 2.1 208 chr3L 3815001 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815105 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815209 intron,3` UTR Scsalpha +,CR43932 - chr3L_18_3815001 chr3L_3815001 RAL-223 1714 chr3L 3833696 3833764 chr3L 3833987 3834055 pogo 27 290 9.5 7.0 8.2 2.9 359 chr3L 3833696 intron enc + chr3L 3833876 intron enc + chr3L 3834055 intron enc + chr3L_27_3830001 chr3L_3830001 RAL-223 1715 chr3L 3877426 3877455 chr3L 3877599 3877628 7 173 6.0 7.0 6.5 0.9 202 chr3L 3877426 intergenic not near genes chr3L 3877527 intergenic not near genes chr3L 3877628 intergenic not near genes chr3L_7_3875001 chr3L_3875001 RAL-223 1716 chr3L 3890915 3890957 chr3L 3891046 3891088 25 131 19.5 1.0 10.2 2.2 173 chr3L 3890915 intergenic not near genes chr3L 3891002 intergenic not near genes chr3L 3891088 intergenic not near genes chr3L_25_3890001 chr3L_3890001 RAL-223 1717 chr3L 3921342 3921410 chr3L 3921656 3921724 18 313 9.5 7.5 8.5 1.9 382 chr3L 3921342 intron Eip63F-1 - chr3L 3921533 intron Eip63F-1 - chr3L 3921724 intron Eip63F-1 - chr3L_18_3920001 chr3L_3920001 RAL-223 1718 chr3L 4147598 4147634 chr3L 4147728 4147764 12 130 13.0 2.5 7.8 1.4 166 chr3L 4147598 intergenic not near genes chr3L 4147681 intergenic not near genes chr3L 4147764 intergenic not near genes chr3L_12_4145001 chr3L_4145001 RAL-223 1719 chr3L 4154208 4154222 chr3L 4154339 4154353 7 131 9.5 10.0 9.8 0.6 145 chr3L 4154208 exon nab - chr3L 4154280 intron nab - chr3L 4154353 intron nab - chr3L_7_4150001 chr3L_4150001 RAL-223 1720 chr3L 4162216 4162291 chr3L 4162378 4162447 21 151 3.5 6.0 4.8 3.6 231 chr3L 4162216 exon mas - chr3L 4162332 intron mas - chr3L 4162447 exon mas - chr3L_21_4160001 chr3L_4160001 RAL-223 1721 chr3L 4187282 4187352 chr3L 4187495 4187565 21 213 8.0 12.5 10.2 1.9 283 chr3L 4187282 intron,intron CG18675 +,Teh2 - chr3L 4187424 intron,intron CG18675 +,Teh2 - chr3L 4187565 intron,intron CG18675 +,Teh2 - chr3L_21_4185001 chr3L_4185001 RAL-223 1722 chr3L 4208697 4208769 chr3L 4208825 4208896 23 128 9.0 5.0 7.0 2.9 199 chr3L 4208697 intron,intron CG43367 +,Cpr64Aa - chr3L 4208796 intron,intron CG43367 +,Cpr64Aa - chr3L 4208896 intron,exon CG43367 +,Cpr64Aa - chr3L_23_4205001 chr3L_4205001 RAL-223 1723 chr3L 4229691 4229759 chr3L 4229836 4229895 25 141 11.5 12.0 11.8 2.0 204 chr3L 4229691 intron ImpL2 - chr3L 4229793 intron ImpL2 - chr3L 4229895 intron ImpL2 - chr3L_25_4225001 chr3L_4225001 RAL-223 1724 chr3L 4328696 4328758 chr3L 4336239 4336306 412 25 7547 1.5 11.0 6.2 3.5 7610 chr3L 4328696 intron Cip4 - chr3L 4332501 intron Cip4 - chr3L 4336306 exon Cip4 - chr3L_25_4330001 chr3L_4330001 RAL-223 1725 chr3L 4344845 4344911 chr3L 4344997 4345053 9 150 5.5 0.0 2.8 2.4 208 chr3L 4344845 intron Cip4 - chr3L 4344949 intron Cip4 - chr3L 4345053 intron Cip4 - chr3L_9_4340001 chr3L_4340001 RAL-223 1726 chr3L 4347778 4347856 chr3L 4347914 4347992 41 135 6.0 6.0 6.0 5.9 214 chr3L 4347778 intron,5` UTR Cip4 -,CR45156 + chr3L 4347885 intron Cip4 - chr3L 4347992 intron Cip4 - chr3L_41_4345001 chr3L_4345001 RAL-223 1727 chr3L 4356240 4356312 chr3L 4356371 4356449 22 131 7.5 6.5 7.0 2.8 209 chr3L 4356240 intron Cip4 - chr3L 4356344 intron Cip4 - chr3L 4356449 intron Cip4 - chr3L_22_4355001 chr3L_4355001 RAL-223 1728 chr3L 4361015 4361024 chr3L 4362921 4362930 4 1906 0.0 7.5 3.8 0.8 1915 chr3L 4361015 intron Cip4 - chr3L 4361972 intron Cip4 - chr3L 4362930 intron Cip4 - chr3L_4_4360001 chr3L_4360001 RAL-223 1729 chr3L 4438722 4438739 chr3L 4438826 4438869 8 122 11.5 11.0 11.2 0.7 147 chr3L 4438722 intergenic CG15021 + chr3L 4438796 intergenic CG15021 + chr3L 4438869 intergenic not near genes chr3L_8_4435001 chr3L_4435001 RAL-223 1730 chr3L 4440704 4440767 chr3L 4440832 4440897 16 128 3.5 1.5 2.5 4.6 193 chr3L 4440704 intergenic not near genes chr3L 4440800 intergenic not near genes chr3L 4440897 intergenic not near genes chr3L_16_4440001 chr3L_4440001 RAL-223 1731 chr3L 4446169 4446232 chr3L 4446305 4446356 24 135 8.0 10.5 9.2 2.4 187 chr3L 4446169 3` UTR CR45739 - chr3L 4446262 3` UTR CR45739 - chr3L 4446356 3` UTR CR45739 - chr3L_24_4445001 chr3L_4445001 RAL-223 1732 chr3L 4487893 4487948 chr3L 4488193 4488275 29 326 12.0 31.5 21.8 1.3 382 chr3L 4487893 intron CG13722 - chr3L 4488084 intron CG13722 - chr3L 4488275 intron CG13722 - chr3L_29_4485001 chr3L_4485001 RAL-223 1733 chr3L 4488358 4488392 chr3L 4488484 4488518 17 126 38.0 14.0 26.0 0.6 160 chr3L 4488358 intron CG13722 - chr3L 4488438 intron CG13722 - chr3L 4488518 intron CG13722 - chr3L_17_4485001 chr3L_4485001 RAL-223 1734 chr3L 4487906 4487911 chr3L 4488393 4488398 6 487 19.5 47.0 33.2 0.2 492 chr3L 4487906 intron CG13722 - chr3L 4488152 intron CG13722 - chr3L 4488398 intron CG13722 - chr3L_6_4485001 chr3L_4485001 RAL-223 1735 chr3L 4487921 4487930 chr3L 4488408 4488417 8 487 16.5 39.0 27.8 0.3 496 chr3L 4487921 intron CG13722 - chr3L 4488169 intron CG13722 - chr3L 4488417 intron CG13722 - chr3L_8_4485001 chr3L_4485001 RAL-223 1736 chr3L 4487936 4488202 chr3L 4488423 4488465 9 414 41.0 36.0 38.5 0.2 529 chr3L 4487936 intron CG13722 - chr3L 4488200 intron CG13722 - chr3L 4488465 intron CG13722 - chr3L_9_4485001 chr3L_4485001 RAL-223 1737 chr3L 4536310 4536366 chr3L 4536461 4536488 16 147 8.5 7.0 7.8 1.8 178 chr3L 4536310 exon CG11353 + chr3L 4536399 intron CG11353 + chr3L 4536488 intron CG11353 + chr3L_16_4535001 chr3L_4535001 RAL-223 1738 chr3L 4675986 4676016 chr3L 4676117 4676147 13 131 14.0 4.5 9.2 1.3 161 chr3L 4675986 intron axo - chr3L 4676066 intron axo - chr3L 4676147 intron axo - chr3L_13_4675001 chr3L_4675001 RAL-223 1739 chr3L 4700748 4700796 chr3L 4700892 4700940 11 143 15.0 0.0 7.5 1.3 192 chr3L 4700748 intron RhoGEF64C + chr3L 4700844 intron RhoGEF64C + chr3L 4700940 intron RhoGEF64C + chr3L_11_4700001 chr3L_4700001 RAL-223 1740 chr3L 4754706 4754768 chr3L 4754832 4754894 16 125 7.5 5.5 6.5 2.1 188 chr3L 4754706 intron RhoGEF64C + chr3L 4754800 intron RhoGEF64C + chr3L 4754894 intron RhoGEF64C + chr3L_16_4750001 chr3L_4750001 RAL-223 1741 chr3L 4784918 4784985 chr3L 4785166 4785244 14 257 0.0 4.5 2.2 4.4 326 chr3L 4784918 intron RhoGEF64C + chr3L 4785081 intron RhoGEF64C + chr3L 4785244 intron RhoGEF64C + chr3L_14_4785001 chr3L_4785001 RAL-223 1742 chr3L 4789466 4789504 chr3L 4789554 4789582 8 107 7.5 11.5 9.5 0.8 116 chr3L 4789466 exon RhoGEF64C + chr3L 4789524 exon RhoGEF64C + chr3L 4789582 exon RhoGEF64C + chr3L_8_4785001 chr3L_4785001 RAL-223 1743 chr3L 4797913 4797987 chr3L 4798043 4798117 22 130 4.5 6.0 5.2 3.5 204 chr3L 4797913 intergenic not near genes chr3L 4798015 intergenic not near genes chr3L 4798117 intergenic not near genes chr3L_22_4795001 chr3L_4795001 RAL-223 1744 chr3L 4858262 4858331 chr3L 4858402 4858471 28 138 7.5 12.0 9.8 2.6 209 chr3L 4858262 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858471 intergenic not near genes chr3L_28_4855001 chr3L_4855001 RAL-223 1745 chr3L 4901089 4901147 chr3L 4907329 4907387 diver 26 6240 12.0 12.0 12.0 2.0 6298 chr3L 4901089 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907387 intergenic not near genes chr3L_26_4900001 chr3L_4900001 RAL-223 1746 chr3L 4914741 4914817 chr3L 4915037 4915113 39 296 9.5 5.0 7.2 4.8 372 chr3L 4914741 intron Rh50 + chr3L 4914927 intron Rh50 + chr3L 4915113 intron Rh50 + chr3L_39_4910001 chr3L_4910001 RAL-223 1747 chr3L 4942685 4942752 chr3L 4942815 4942882 27 129 3.5 8.5 6.0 3.9 197 chr3L 4942685 intron Con - chr3L 4942784 intron Con - chr3L 4942882 intron Con - chr3L_27_4940001 chr3L_4940001 RAL-223 1748 chr3L 4985319 4985385 chr3L 4985448 4985514 19 129 10.0 3.5 6.8 2.4 195 chr3L 4985319 intron Con - chr3L 4985416 intron Con - chr3L 4985514 intron Con - chr3L_19_4985001 chr3L_4985001 RAL-223 1749 chr3L 5015608 5015653 chr3L 5015739 5015784 10 130 5.5 4.0 4.8 1.7 176 chr3L 5015608 intron Con - chr3L 5015696 intron Con - chr3L 5015784 intron Con - chr3L_10_5015001 chr3L_5015001 RAL-223 1750 chr3L 5034118 5034177 chr3L 5043320 5043379 roo 27 9202 12.0 10.5 11.2 2.2 9261 chr3L 5034118 intron Con - chr3L 5038748 intron Con - chr3L 5043379 intron Con - chr3L_27_5035001 chr3L_5035001 RAL-223 1751 chr3L 5045411 5045478 chr3L 5050242 5050309 Doc 17 4831 8.5 8.0 8.2 1.8 4898 chr3L 5045411 5` UTR Con - chr3L 5047860 intron Con - chr3L 5050309 intron Con - chr3L_17_5045001 chr3L_5045001 RAL-223 1752 chr3L 5066236 5066248 chr3L 5066396 5066408 4 160 8.0 4.0 6.0 0.6 172 chr3L 5066236 intron Con - chr3L 5066322 intron Con - chr3L 5066408 intron Con - chr3L_4_5065001 chr3L_5065001 RAL-223 1753 chr3L 5101160 5101221 chr3L 5101289 5101351 14 129 6.0 5.0 5.5 2.2 191 chr3L 5101160 intergenic not near genes chr3L 5101256 intergenic not near genes chr3L 5101351 intergenic not near genes chr3L_14_5100001 chr3L_5100001 RAL-223 1754 chr3L 5104434 5104509 chr3L 5124618 5124693 21 20183 8.0 10.0 9.0 2.1 20259 chr3L 5104434 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124693 intergenic not near genes chr3L_21_5110001 chr3L_5110001 RAL-223 1755 chr3L 5130880 5130959 chr3L 5131033 5131112 28 153 5.0 5.5 5.2 4.5 232 chr3L 5130880 intergenic not near genes chr3L 5130996 intergenic not near genes chr3L 5131112 intergenic CG15212 + chr3L_28_5130001 chr3L_5130001 RAL-223 1756 chr3L 5194464 5194529 chr3L 5194620 5194625 6 145 6.5 0.0 3.2 1.4 161 chr3L 5194464 intron shep - chr3L 5194544 intron shep - chr3L 5194625 intron shep - chr3L_6_5190001 chr3L_5190001 RAL-223 1757 chr3L 5223379 5223450 chr3L 5223511 5223562 21 123 6.5 7.0 6.8 2.7 183 chr3L 5223379 intron shep - chr3L 5223470 intron shep - chr3L 5223562 intron shep - chr3L_21_5220001 chr3L_5220001 RAL-223 1758 chr3L 5225016 5225101 chr3L 5225178 5225252 9 161 0.0 0.0 0.0 9.0 236 chr3L 5225016 intron shep - chr3L 5225134 intron shep - chr3L 5225252 intron shep - chr3L_9_5225001 chr3L_5225001 RAL-223 1759 chr3L 5252022 5252091 chr3L 5253117 5253186 15 1095 3.5 1.0 2.2 4.7 1164 chr3L 5252022 intron shep - chr3L 5252604 intron shep - chr3L 5253186 intron shep - chr3L_15_5250001 chr3L_5250001 RAL-223 1760 chr3L 5266984 5267031 chr3L 5267111 5267163 5 118 9.5 5.5 7.5 0.6 179 chr3L 5266984 intron shep - chr3L 5267074 intron shep - chr3L 5267163 intron shep - chr3L_5_5265001 chr3L_5265001 RAL-223 1761 chr3L 5291645 5291694 chr3L 5291772 5291821 13 126 9.0 11.5 10.2 1.2 176 chr3L 5291645 intergenic not near genes chr3L 5291733 intergenic not near genes chr3L 5291821 intergenic not near genes chr3L_13_5290001 chr3L_5290001 RAL-223 1762 chr3L 5327415 5327478 chr3L 5327550 5327613 22 135 5.0 5.5 5.2 3.5 198 chr3L 5327415 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327613 intergenic not near genes chr3L_22_5325001 chr3L_5325001 RAL-223 1763 chr3L 5356398 5356405 chr3L 5356525 5356532 5 127 7.0 0.0 3.5 1.1 134 chr3L 5356398 intergenic Klp64D -,lama - chr3L 5356465 intergenic Klp64D - chr3L 5356532 intergenic Klp64D - chr3L_5_5355001 chr3L_5355001 RAL-223 1764 chr3L 5428662 5428678 chr3L 5428790 5428806 5 128 4.5 0.0 2.2 1.6 144 chr3L 5428662 intron CG34391 + chr3L 5428734 intron CG34391 + chr3L 5428806 intron CG34391 + chr3L_5_5425001 chr3L_5425001 RAL-223 1765 chr3L 5429353 5429427 chr3L 5429499 5429573 23 146 5.0 4.5 4.8 4.0 220 chr3L 5429353 5` UTR CG34391 + chr3L 5429463 5` UTR CG34391 + chr3L 5429573 exon CG34391 + chr3L_23_5425001 chr3L_5425001 RAL-223 1766 chr3L 5449483 5449562 chr3L 5449612 5449691 25 129 6.0 4.0 5.0 4.2 208 chr3L 5449483 intergenic not near genes chr3L 5449587 intergenic not near genes chr3L 5449691 intergenic not near genes chr3L_25_5445001 chr3L_5445001 RAL-223 1767 chr3L 5452267 5452342 chr3L 5452398 5452473 14 131 3.5 1.0 2.2 4.4 206 chr3L 5452267 intergenic not near genes chr3L 5452370 intergenic not near genes chr3L 5452473 intergenic not near genes chr3L_14_5450001 chr3L_5450001 RAL-223 1768 chr3L 5498341 5498422 chr3L 5498474 5498549 23 135 1.0 9.5 5.2 3.7 208 chr3L 5498341 exon blanks - chr3L 5498445 exon blanks - chr3L 5498549 exon blanks - chr3L_23_5495001 chr3L_5495001 RAL-223 1769 chr3L 5504512 5504550 chr3L 5504640 5504678 14 128 8.0 2.5 5.2 2.3 166 chr3L 5504512 intron CG34342 - chr3L 5504595 intron CG34342 - chr3L 5504678 intron CG34342 - chr3L_14_5500001 chr3L_5500001 RAL-223 1770 chr3L 5537675 5537747 chr3L 5538067 5538139 jockey 23 389 5.5 7.5 6.5 3.1 464 chr3L 5537675 intergenic not near genes chr3L 5537907 intergenic not near genes chr3L 5538139 intergenic CG10625 - chr3L_23_5535001 chr3L_5535001 RAL-223 1771 chr3L 5574439 5574494 chr3L 5574556 5574614 22 131 6.5 7.0 6.8 2.8 175 chr3L 5574439 intron Msr-110 - chr3L 5574526 intron Msr-110 - chr3L 5574614 intron Msr-110 - chr3L_22_5570001 chr3L_5570001 RAL-223 1772 chr3L 5575945 5576019 chr3L 5576075 5576148 40 130 10.0 12.0 11.0 3.3 203 chr3L 5575945 intron Msr-110 - chr3L 5576046 intron Msr-110 - chr3L 5576148 intron Msr-110 - chr3L_40_5575001 chr3L_5575001 RAL-223 1773 chr3L 5597785 5597828 chr3L 5597915 5597958 12 130 10.0 0.0 5.0 2.0 173 chr3L 5597785 intergenic CG5150 + chr3L 5597872 intergenic CG5150 + chr3L 5597958 intergenic not near genes chr3L_12_5595001 chr3L_5595001 RAL-223 1774 chr3L 5613446 5613496 chr3L 5613623 5613673 20 177 9.5 6.0 7.8 2.3 227 chr3L 5613446 intergenic not near genes chr3L 5613560 intergenic not near genes chr3L 5613673 intergenic not near genes chr3L_20_5610001 chr3L_5610001 RAL-223 1775 chr3L 5667579 5667650 chr3L 5667709 5667780 19 129 7.0 4.0 5.5 2.9 201 chr3L 5667579 intron sif + chr3L 5667680 intron sif + chr3L 5667780 intron sif + chr3L_19_5665001 chr3L_5665001 RAL-223 1776 chr3L 5908048 5908105 chr3L 5908178 5908235 13 130 0.0 10.0 5.0 2.2 187 chr3L 5908048 intron CG13288 + chr3L 5908142 intron CG13288 + chr3L 5908235 intron CG13288 + chr3L_13_5905001 chr3L_5905001 RAL-223 1777 chr3L 5909981 5910058 chr3L 5910272 5910349 pogo 10 289 5.5 0.0 2.8 2.6 368 chr3L 5909981 intron CG13288 + chr3L 5910165 intron CG13288 + chr3L 5910349 intron CG13288 + chr3L_10_5910001 chr3L_5910001 RAL-223 1778 chr3L 5926270 5926310 chr3L 5926510 5926550 15 239 16.5 6.5 11.5 1.2 280 chr3L 5926270 intron Vap-33B + chr3L 5926410 intron Vap-33B + chr3L 5926550 intron Vap-33B + chr3L_15_5925001 chr3L_5925001 RAL-223 1779 chr3L 5926318 5926347 chr3L 5926504 5926589 BS 8 235 9.0 6.5 7.8 0.9 271 chr3L 5926318 intron Vap-33B + chr3L 5926454 intron Vap-33B + chr3L 5926589 intron Vap-33B + chr3L_8_5925001 chr3L_5925001 RAL-223 1780 chr3L 5967039 5967050 chr3L 5967199 5967215 5 164 4.0 10.5 7.2 0.6 176 chr3L 5967039 intergenic not near genes chr3L 5967127 intergenic CG10479 - chr3L 5967215 intergenic CG10479 - chr3L_5_5965001 chr3L_5965001 RAL-223 1781 chr3L 5983819 5983863 chr3L 5983990 5984004 21 169 10.0 0.0 5.0 3.5 185 chr3L 5983819 3` UTR CR45439 - chr3L 5983912 intergenic CR45439 -,CR45440 - chr3L 5984004 intergenic CR45440 -,CR45439 - chr3L_21_5980001 chr3L_5980001 RAL-223 1782 chr3L 5986991 5987048 chr3L 5987122 5987179 20 130 9.0 5.5 7.2 2.4 188 chr3L 5986991 intergenic not near genes chr3L 5987085 intergenic not near genes chr3L 5987179 intergenic not near genes chr3L_20_5985001 chr3L_5985001 RAL-223 1783 chr3L 5992575 5992620 chr3L 5992727 5992772 21 152 9.5 9.0 9.2 2.1 197 chr3L 5992575 intergenic not near genes chr3L 5992674 intergenic not near genes chr3L 5992772 intergenic not near genes chr3L_21_5990001 chr3L_5990001 RAL-223 1784 chr3L 6001641 6001708 chr3L 6004391 6004458 jockey 20 2749 8.5 0.5 4.5 3.6 2817 chr3L 6001641 intron PVRAP + chr3L 6003050 intron PVRAP + chr3L 6004458 intron PVRAP + chr3L_20_6000001 chr3L_6000001 RAL-223 1785 chr3L 6040316 6040379 chr3L 6042722 6042785 Doc 26 2406 13.0 7.5 10.2 2.3 2469 chr3L 6040316 intergenic Jon65Aiv + chr3L 6041550 intergenic not near genes chr3L 6042785 intergenic not near genes chr3L_26_6040001 chr3L_6040001 RAL-223 1786 chr3L 6052086 6052149 chr3L 6052222 6052285 10 136 3.5 5.0 4.2 1.9 199 chr3L 6052086 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052186 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052285 intergenic Jon65Aii + chr3L_10_6050001 chr3L_6050001 RAL-223 1787 chr3L 6052622 6052654 chr3L 6052739 6052749 7 122 11.5 9.5 10.5 0.6 127 chr3L 6052622 exon Jon65Aii + chr3L 6052686 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_7_6050001 chr3L_6050001 RAL-223 1788 chr3L 6058368 6058399 chr3L 6058573 6058604 14 204 11.0 18.0 14.5 0.9 236 chr3L 6058368 intergenic not near genes chr3L 6058486 intergenic not near genes chr3L 6058604 intergenic CR45441 + chr3L_14_6055001 chr3L_6055001 RAL-223 1789 chr3L 2182155 2182158 chr3L 6061840 6061843 4 3879685 25.0 29.0 27.0 0.1 3879688 chr3L 2182155 intergenic not near genes chr3L 4121999 intron Chd64 - chr3L 6061843 intron CG10472 - chr3L_4_4120001 chr3L_4120001 RAL-223 1790 chr3L 6119135 6119172 chr3L 6119256 6119299 15 126 7.0 7.0 7.0 1.9 164 chr3L 6119135 exon Ets65A + chr3L 6119217 intron Ets65A + chr3L 6119299 intron Ets65A + chr3L_15_6115001 chr3L_6115001 RAL-223 1791 chr3L 6124350 6124379 chr3L 6124507 6124525 6 155 0.5 22.5 11.5 0.5 175 chr3L 6124350 exon l(3)mbn - chr3L 6124438 exon l(3)mbn - chr3L 6124525 exon l(3)mbn - chr3L_6_6120001 chr3L_6120001 RAL-223 1792 chr3L 6155656 6155679 chr3L 6155792 6155815 8 136 17.0 5.5 11.2 0.7 159 chr3L 6155656 intergenic CR45421 - chr3L 6155736 intergenic not near genes chr3L 6155815 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-223 1793 chr3L 6155684 6155709 chr3L 6155786 6155845 8 132 10.0 5.5 7.8 0.9 161 chr3L 6155684 intergenic CR45421 - chr3L 6155764 intergenic not near genes chr3L 6155845 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-223 1794 chr3L 6169080 6169133 chr3L 6169209 6169262 19 128 13.0 12.0 12.5 1.4 182 chr3L 6169080 3` UTR CG10289 - chr3L 6169171 3` UTR CG10289 - chr3L 6169262 3` UTR CG10289 - chr3L_19_6165001 chr3L_6165001 RAL-223 1795 chr3L 6220876 6220940 chr3L 6230078 6230142 roo 31 9201 7.5 16.0 11.8 2.4 9266 chr3L 6220876 5` UTR pncr008:3L + chr3L 6225509 intergenic not near genes chr3L 6230142 intergenic not near genes chr3L_31_6225001 chr3L_6225001 RAL-223 1796 chr3L 6231115 6231361 chr3L 6231246 6231495 26 134 5.0 5.5 5.2 4.2 380 chr3L 6231115 intergenic not near genes chr3L 6231305 intergenic CG13299 - chr3L 6231495 intergenic CG13299 - chr3L_26_6230001 chr3L_6230001 RAL-223 1797 chr3L 6278001 6278227 chr3L 6278128 6278349 33 125 6.5 6.5 6.5 4.4 348 chr3L 6278001 intergenic not near genes chr3L 6278175 intergenic not near genes chr3L 6278349 intergenic not near genes chr3L_33_6275001 chr3L_6275001 RAL-223 1798 chr3L 6325321 6325342 chr3L 6325457 6325480 7 137 7.5 0.0 3.8 1.5 159 chr3L 6325321 intergenic Or65b + chr3L 6325400 intergenic Or65b + chr3L 6325480 intergenic Or65b + chr3L_7_6325001 chr3L_6325001 RAL-223 1799 chr3L 6334964 6335037 chr3L 6335484 6335539 297 32 520 6.5 9.5 8.0 3.6 575 chr3L 6334964 intron CG13300 - chr3L 6335252 intron CG13300 - chr3L 6335539 intron CG13300 - chr3L_32_6335001 chr3L_6335001 RAL-223 1800 chr3L 6369720 6369766 chr3L 6369874 6369920 7 154 7.0 0.0 3.5 1.6 200 chr3L 6369720 intergenic CR45419 - chr3L 6369820 intergenic CR45419 - chr3L 6369920 intergenic CR45419 - chr3L_7_6365001 chr3L_6365001 RAL-223 1801 chr3L 6371393 6371453 chr3L 6371522 6371584 12 129 2.5 5.5 4.0 2.4 191 chr3L 6371393 intergenic not near genes chr3L 6371488 intergenic not near genes chr3L 6371584 intergenic not near genes chr3L_12_6370001 chr3L_6370001 RAL-223 1802 chr3L 6405619 6405680 chr3L 6432133 6432194 roo 24 26514 10.0 6.5 8.2 2.6 26575 chr3L 6405619 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432194 intron CG42747 + chr3L_24_6415001 chr3L_6415001 RAL-223 1803 chr3L 6456310 6456320 chr3L 6456444 6456454 5 134 12.0 16.0 14.0 0.3 144 chr3L 6456310 intron CG42747 + chr3L 6456382 intron CG42747 + chr3L 6456454 intron CG42747 + chr3L_5_6455001 chr3L_6455001 RAL-223 1804 chr3L 6462943 6462992 chr3L 6463067 6463123 18 129 9.5 0.0 4.8 3.1 180 chr3L 6462943 intron CG42747 + chr3L 6463033 intron CG42747 + chr3L 6463123 intron CG42747 + chr3L_18_6460001 chr3L_6460001 RAL-223 1805 chr3L 6620563 6620600 chr3L 6621053 6621090 Rt1c 20 490 11.5 17.5 14.5 1.3 527 chr3L 6620563 intergenic not near genes chr3L 6620826 intergenic not near genes chr3L 6621090 intergenic not near genes chr3L_20_6620001 chr3L_6620001 RAL-223 1806 chr3L 6668931 6668949 chr3L 6669062 6669080 7 131 16.0 0.0 8.0 0.8 149 chr3L 6668931 intergenic not near genes chr3L 6669006 intergenic not near genes chr3L 6669080 intergenic not near genes chr3L_7_6665001 chr3L_6665001 RAL-223 1807 chr3L 6668950 6668962 chr3L 6669060 6669093 11 129 14.0 0.0 7.0 1.4 143 chr3L 6668950 intergenic not near genes chr3L 6669022 intergenic not near genes chr3L 6669093 intergenic not near genes chr3L_11_6665001 chr3L_6665001 RAL-223 1808 chr3L 6672748 6672820 chr3L 6672888 6672960 37 140 8.5 3.0 5.8 5.4 212 chr3L 6672748 intergenic not near genes chr3L 6672854 intergenic not near genes chr3L 6672960 intergenic not near genes chr3L_37_6670001 chr3L_6670001 RAL-223 1809 chr3L 6726797 6726825 chr3L 6726923 6726951 14 126 0.0 9.0 4.5 2.5 154 chr3L 6726797 intergenic not near genes chr3L 6726874 intergenic not near genes chr3L 6726951 intergenic not near genes chr3L_14_6725001 chr3L_6725001 RAL-223 1810 chr3L 6781078 6781149 chr3L 6783141 6783212 Doc 24 2063 7.5 8.5 8.0 2.7 2134 chr3L 6781078 intergenic not near genes chr3L 6782145 intergenic not near genes chr3L 6783212 intergenic not near genes chr3L_24_6780001 chr3L_6780001 RAL-223 1811 chr3L 6835880 6835922 chr3L 6836008 6836050 25 128 8.5 9.5 9.0 2.5 170 chr3L 6835880 intergenic not near genes chr3L 6835965 intergenic not near genes chr3L 6836050 intergenic not near genes chr3L_25_6835001 chr3L_6835001 RAL-223 1812 chr3L 6855881 6855948 chr3L 6860715 6860717 Doc 30 4829 6.5 6.5 6.5 4.0 4836 chr3L 6855881 intergenic not near genes chr3L 6858299 intergenic not near genes chr3L 6860717 intergenic not near genes chr3L_30_6855001 chr3L_6855001 RAL-223 1813 chr3L 6868678 6868743 chr3L 6868806 6868871 29 128 0.0 6.5 3.2 6.9 193 chr3L 6868678 intergenic not near genes chr3L 6868774 intergenic not near genes chr3L 6868871 intergenic not near genes chr3L_29_6865001 chr3L_6865001 RAL-223 1814 chr3L 6885648 6885651 chr3L 6885776 6885779 4 128 11.0 0.0 5.5 0.6 131 chr3L 6885648 intergenic not near genes chr3L 6885714 intergenic not near genes chr3L 6885779 intergenic not near genes chr3L_4_6885001 chr3L_6885001 RAL-223 1815 chr3L 6887476 6887542 chr3L 6895018 6895084 roo 28 7542 7.5 7.0 7.2 3.4 7608 chr3L 6887476 intergenic not near genes chr3L 6891280 intergenic not near genes chr3L 6895084 intergenic not near genes chr3L_28_6890001 chr3L_6890001 RAL-223 1816 chr3L 6907970 6908044 chr3L 6908105 6908172 15 130 6.5 0.5 3.5 3.3 202 chr3L 6907970 intergenic not near genes chr3L 6908071 intergenic not near genes chr3L 6908172 intergenic not near genes chr3L_15_6905001 chr3L_6905001 RAL-223 1817 chr3L 6958982 6959033 chr3L 6963511 6963562 15 4535 46.5 59.5 53.0 0.3 4580 chr3L 6958982 exon Surf1 + chr3L 6961272 exon sgl - chr3L 6963562 intron sgl - chr3L_15_6960001 chr3L_6960001 RAL-223 1818 chr3L 6958979 6959053 chr3L 6963564 6963582 6 4538 50.0 50.0 50.0 0.1 4603 chr3L 6958979 exon Surf1 + chr3L 6961280 exon sgl - chr3L 6963582 intron sgl - chr3L_6_6960001 chr3L_6960001 RAL-223 1819 chr3L 6974441 6974514 chr3L 6974592 6974665 17 151 5.5 3.5 4.5 3.1 224 chr3L 6974441 exon Galphai - chr3L 6974553 intron Galphai - chr3L 6974665 intron Galphai - chr3L_17_6970001 chr3L_6970001 RAL-223 1820 chr3L 6994885 6994914 chr3L 6995496 6995525 BS 7 611 6.0 5.5 5.8 1.0 640 chr3L 6994885 intergenic bin + chr3L 6995205 intergenic not near genes chr3L 6995525 intergenic not near genes chr3L_7_6995001 chr3L_6995001 RAL-223 1821 chr3L 7000325 7000341 chr3L 7000522 7000538 10 196 13.0 0.0 6.5 1.3 213 chr3L 7000325 intron Mp + chr3L 7000432 intron Mp + chr3L 7000538 intron Mp + chr3L_10_7000001 chr3L_7000001 RAL-223 1822 chr3L 7061357 7061407 chr3L 7061493 7061543 30 136 7.5 8.5 8.0 3.3 186 chr3L 7061357 intron CG8641 - chr3L 7061450 intron CG8641 - chr3L 7061543 intron CG8641 - chr3L_30_7060001 chr3L_7060001 RAL-223 1823 chr3L 7086827 7086852 chr3L 7086957 7086982 4 130 6.0 6.5 6.2 0.6 155 chr3L 7086827 intergenic Cpr65Ea - chr3L 7086904 intergenic Cpr65Ea - chr3L 7086982 intergenic Cpr65Ea - chr3L_4_7085001 chr3L_7085001 RAL-223 1824 chr3L 7094300 7094355 chr3L 7094413 7094482 4 123 0.0 0.0 0.0 4.0 182 chr3L 7094300 intergenic Cpr65Ec + chr3L 7094391 intergenic form3 + chr3L 7094482 intergenic form3 + chr3L_4_7090001 chr3L_7090001 RAL-223 1825 chr3L 7112537 7112604 chr3L 7112673 7112741 22 136 0.0 5.5 2.8 5.8 204 chr3L 7112537 intron form3 + chr3L 7112639 intron form3 + chr3L 7112741 intron form3 + chr3L_22_7110001 chr3L_7110001 RAL-223 1826 chr3L 7227458 7227532 chr3L 7227590 7227664 30 131 7.0 5.5 6.2 4.2 206 chr3L 7227458 intergenic not near genes chr3L 7227561 intergenic not near genes chr3L 7227664 intergenic not near genes chr3L_30_7225001 chr3L_7225001 RAL-223 1827 chr3L 7244886 7244965 chr3L 7245028 7245098 26 139 9.0 7.0 8.0 2.9 212 chr3L 7244886 exon mei-P22 + chr3L 7244992 exon mei-P22 + chr3L 7245098 exon mei-P22 + chr3L_26_7240001 chr3L_7240001 RAL-223 1828 chr3L 7264823 7264895 chr3L 7264969 7265028 8 135 0.0 3.5 1.8 2.9 205 chr3L 7264823 intergenic not near genes chr3L 7264926 intergenic not near genes chr3L 7265028 intergenic not near genes chr3L_8_7260001 chr3L_7260001 RAL-223 1829 chr3L 7276103 7276168 chr3L 7276238 7276300 6 134 9.5 11.0 10.2 0.5 197 chr3L 7276103 intron unc-13-4A - chr3L 7276202 intron unc-13-4A - chr3L 7276300 intron unc-13-4A - chr3L_6_7275001 chr3L_7275001 RAL-223 1830 chr3L 7292859 7292891 chr3L 7293046 7293078 15 186 15.5 12.5 14.0 1.0 219 chr3L 7292859 intron unc-13-4A - chr3L 7292968 intron unc-13-4A - chr3L 7293078 intron unc-13-4A - chr3L_15_7290001 chr3L_7290001 RAL-223 1831 chr3L 7358250 7358321 chr3L 7359584 7359655 42 1332 12.5 11.0 11.8 3.3 1405 chr3L 7358250 exon pst - chr3L 7358952 exon pst - chr3L 7359655 intron pst - chr3L_42_7355001 chr3L_7355001 RAL-223 1832 chr3L 7377272 7377338 chr3L 7380427 7380493 297 32 3155 7.5 13.5 10.5 2.8 3221 chr3L 7377272 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380493 intron SMSr - chr3L_32_7375001 chr3L_7375001 RAL-223 1833 chr3L 7413411 7413471 chr3L 7413876 7413936 23 465 5.5 0.0 2.8 6.1 525 chr3L 7413411 intergenic not near genes chr3L 7413674 intergenic not near genes chr3L 7413936 intergenic not near genes chr3L_23_7410001 chr3L_7410001 RAL-223 1834 chr3L 7422842 7422917 chr3L 7422978 7423053 16 136 6.5 0.0 3.2 3.8 211 chr3L 7422842 intergenic not near genes chr3L 7422948 intergenic not near genes chr3L 7423053 intergenic not near genes chr3L_16_7420001 chr3L_7420001 RAL-223 1835 chr3L 7450639 7450703 chr3L 7450771 7450833 20 131 6.0 5.5 5.8 2.9 194 chr3L 7450639 intron CG42458 + chr3L 7450736 intron CG42458 + chr3L 7450833 intron CG42458 + chr3L_20_7450001 chr3L_7450001 RAL-223 1836 chr3L 7455245 7455298 chr3L 7455408 7455461 6 163 0.0 9.5 4.8 1.0 216 chr3L 7455245 intergenic not near genes chr3L 7455353 intergenic not near genes chr3L 7455461 intergenic not near genes chr3L_6_7455001 chr3L_7455001 RAL-223 1837 chr3L 7491309 7491374 chr3L 7491435 7491500 23 126 6.5 8.5 7.5 2.7 191 chr3L 7491309 intergenic not near genes chr3L 7491404 intergenic Cyp316a1 + chr3L 7491500 intergenic Cyp316a1 + chr3L_23_7490001 chr3L_7490001 RAL-223 1838 chr3L 7495539 7495596 chr3L 7495680 7495737 14 141 8.5 7.5 8.0 1.6 198 chr3L 7495539 intron Cyp4d8 - chr3L 7495638 intron Cyp4d8 - chr3L 7495737 intron Cyp4d8 - chr3L_14_7495001 chr3L_7495001 RAL-223 1839 chr3L 7498728 7498775 chr3L 7503555 7503602 F-element 13 4827 8.0 7.5 7.8 1.5 4874 chr3L 7498728 5` UTR CG8539 - chr3L 7501165 intergenic not near genes chr3L 7503602 intergenic not near genes chr3L_13_7500001 chr3L_7500001 RAL-223 1840 chr3L 7505382 7505431 chr3L 7505508 7505557 13 126 4.5 10.0 7.2 1.6 175 chr3L 7505382 intergenic CG7548 - chr3L 7505470 intergenic CG7548 - chr3L 7505557 3` UTR CG7548 - chr3L_13_7505001 chr3L_7505001 RAL-223 1841 chr3L 7572232 7572272 chr3L 7572369 7572409 7 135 13.0 4.5 8.8 0.7 177 chr3L 7572232 intergenic not near genes chr3L 7572320 intergenic not near genes chr3L 7572409 intergenic not near genes chr3L_7_7570001 chr3L_7570001 RAL-223 1842 chr3L 7591099 7591175 chr3L 7591240 7591307 33 138 5.0 7.0 6.0 4.7 208 chr3L 7591099 intergenic CG7716 - chr3L 7591203 intergenic CG7716 - chr3L 7591307 intergenic CG7716 - chr3L_33_7590001 chr3L_7590001 RAL-223 1843 chr3L 7745146 7745211 chr3L 7746476 7746543 19 1330 8.0 0.0 4.0 3.8 1397 chr3L 7745146 intron CG32373 + chr3L 7745844 intron CG32373 + chr3L 7746543 intron CG32373 + chr3L_19_7745001 chr3L_7745001 RAL-223 1844 chr3L 7767522 7767550 chr3L 7767703 7767731 8 181 13.0 14.5 13.8 0.5 209 chr3L 7767522 intron,exon Clk -,CG32371 - chr3L 7767626 intron,exon Clk -,CG32371 - chr3L 7767731 intron,exon Clk -,CG32371 - chr3L_8_7765001 chr3L_7765001 RAL-223 1845 chr3L 7793669 7793733 chr3L 7800771 7800835 297 24 7102 8.0 10.5 9.2 2.4 7166 chr3L 7793669 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800835 intron CG32369 - chr3L_24_7795001 chr3L_7795001 RAL-223 1846 chr3L 7817011 7817055 chr3L 7817194 7817238 21 183 13.5 0.0 6.8 2.7 227 chr3L 7817011 intron Pdp1 - chr3L 7817124 intron Pdp1 - chr3L 7817238 intron Pdp1 - chr3L_21_7815001 chr3L_7815001 RAL-223 1847 chr3L 7843112 7843140 chr3L 7843254 7843282 11 142 9.0 3.0 6.0 1.6 170 chr3L 7843112 intron Pdp1 - chr3L 7843197 intron Pdp1 - chr3L 7843282 intron Pdp1 - chr3L_11_7840001 chr3L_7840001 RAL-223 1848 chr3L 7856381 7856424 chr3L 7856514 7856557 18 130 15.0 11.5 13.2 1.3 176 chr3L 7856381 intron Pdp1 - chr3L 7856469 intron Pdp1 - chr3L 7856557 intron Pdp1 - chr3L_18_7855001 chr3L_7855001 RAL-223 1849 chr3L 7867762 7867942 chr3L 7867890 7868085 22 137 0.0 0.0 0.0 22.0 323 chr3L 7867762 intergenic Pdp1 - chr3L 7867924 intergenic not near genes chr3L 7868085 intergenic not near genes chr3L_22_7865001 chr3L_7865001 RAL-223 1850 chr3L 7876094 7876125 chr3L 7876223 7876254 6 129 0.0 0.0 0.0 6.0 160 chr3L 7876094 intron CG32365 + chr3L 7876174 intron CG32365 + chr3L 7876254 intron CG32365 + chr3L_6_7875001 chr3L_7875001 RAL-223 1851 chr3L 7886518 7886537 chr3L 7889087 7889106 Stalker4 11 2569 0.0 15.5 7.8 1.2 2588 chr3L 7886518 intron CG32365 + chr3L 7887812 intron CG32365 + chr3L 7889106 intron CG32365 + chr3L_11_7885001 chr3L_7885001 RAL-223 1852 chr3L 7916785 7916851 chr3L 7926006 7926072 roo 24 9221 9.0 7.5 8.2 2.6 9287 chr3L 7916785 3` UTR syd - chr3L 7921428 intron syd - chr3L 7926072 3` UTR syd - chr3L_24_7920001 chr3L_7920001 RAL-223 1853 chr3L 7968977 7969043 chr3L 7969107 7969173 27 130 8.0 6.5 7.2 3.3 196 chr3L 7968977 intergenic not near genes chr3L 7969075 intergenic not near genes chr3L 7969173 intergenic not near genes chr3L_27_7965001 chr3L_7965001 RAL-223 1854 chr3L 7985335 7985385 chr3L 7987707 7987763 NOF 26 2376 12.5 10.5 11.5 2.1 2428 chr3L 7985335 intron nmo + chr3L 7986549 intron nmo + chr3L 7987763 intron nmo + chr3L_26_7985001 chr3L_7985001 RAL-223 1855 chr3L 8030068 8030141 chr3L 8030217 8030294 31 152 7.0 8.5 7.8 3.5 226 chr3L 8030068 intron nmo + chr3L 8030181 intron nmo + chr3L 8030294 intron nmo + chr3L_31_8030001 chr3L_8030001 RAL-223 1856 chr3L 8058395 8058460 chr3L 8058773 8058838 30 377 10.0 8.5 9.2 2.9 443 chr3L 8058395 intron bip1 - chr3L 8058616 5` UTR bip1 - chr3L 8058838 intergenic bip1 - chr3L_30_8055001 chr3L_8055001 RAL-223 1857 chr3L 8062799 8062851 chr3L 8062926 8062978 20 127 5.0 10.5 7.8 2.3 179 chr3L 8062799 intergenic not near genes chr3L 8062888 intergenic not near genes chr3L 8062978 intergenic not near genes chr3L_20_8060001 chr3L_8060001 RAL-223 1858 chr3L 8149713 8149768 chr3L 8149869 8149924 21 155 5.5 7.0 6.2 2.9 211 chr3L 8149713 intron CG13676 - chr3L 8149818 intron CG13676 - chr3L 8149924 intron CG13676 - chr3L_21_8145001 chr3L_8145001 RAL-223 1859 chr3L 8158147 8158329 chr3L 8158282 8158464 30 134 0.0 0.0 0.0 30.0 317 chr3L 8158147 intron CG42445 - chr3L 8158306 intron CG42445 - chr3L 8158464 intron CG42445 - chr3L_30_8155001 chr3L_8155001 RAL-223 1860 chr3L 8228368 8228370 chr3L 18417066 18417066 5 10188696 26.0 39.0 32.5 0.1 10188698 chr3L 8228368 intergenic not near genes chr3L 13322717 intergenic not near genes chr3L 18417066 intergenic not near genes chr3L_5_13320001 chr3L_13320001 RAL-223 1861 chr3L 8233544 8233583 chr3L 8238856 8238895 Rt1a 14 5310 8.0 12.0 10.0 1.3 5351 chr3L 8233544 intron CG7213 - chr3L 8236220 intron CG7213 - chr3L 8238895 intron,intron CG7213 -,Dscam4 + chr3L_14_8235001 chr3L_8235001 RAL-223 1862 chr3L 8267194 8267262 chr3L 8267468 8267536 31 273 9.0 9.0 9.0 3.1 342 chr3L 8267194 intron Dscam4 + chr3L 8267365 intron Dscam4 + chr3L 8267536 intron Dscam4 + chr3L_31_8265001 chr3L_8265001 RAL-223 1863 chr3L 8295744 8295817 chr3L 8295952 8296025 22 206 9.0 9.0 9.0 2.2 281 chr3L 8295744 intergenic CG7201 - chr3L 8295884 intergenic not near genes chr3L 8296025 intergenic not near genes chr3L_22_8295001 chr3L_8295001 RAL-223 1864 chr3L 8314756 8314765 chr3L 8314899 8314908 5 143 0.0 17.0 8.5 0.5 152 chr3L 8314756 intron CG7185 - chr3L 8314832 intron CG7185 - chr3L 8314908 intron CG7185 - chr3L_5_8310001 chr3L_8310001 RAL-223 1865 chr3L 8317863 8317934 chr3L 8318022 8318093 10 159 6.5 7.5 7.0 1.2 230 chr3L 8317863 intergenic not near genes chr3L 8317978 intergenic not near genes chr3L 8318093 intergenic CG43059 - chr3L_10_8315001 chr3L_8315001 RAL-223 1866 chr3L 8363683 8363759 chr3L 8363813 8363891 10 131 7.0 0.0 3.5 2.2 208 chr3L 8363683 intergenic not near genes chr3L 8363787 intergenic not near genes chr3L 8363891 intergenic not near genes chr3L_10_8360001 chr3L_8360001 RAL-223 1867 chr3L 8392549 8392695 chr3L 8392690 8392826 11 140 0.0 0.0 0.0 11.0 277 chr3L 8392549 intergenic Jon66Ci +,Jon66Cii - chr3L 8392688 intergenic Jon66Cii -,Jon66Ci + chr3L 8392826 3` UTR Jon66Cii - chr3L_11_8390001 chr3L_8390001 RAL-223 1868 chr3L 8395788 8395823 chr3L 8395934 8395969 16 144 13.5 10.0 11.8 1.2 181 chr3L 8395788 intergenic CG7120 + chr3L 8395878 intergenic CG7120 + chr3L 8395969 intergenic CG7120 + chr3L_16_8395001 chr3L_8395001 RAL-223 1869 chr3L 8395827 8395861 chr3L 8395928 8396007 8 133 5.5 9.0 7.2 1.0 180 chr3L 8395827 intergenic CG7120 + chr3L 8395917 intergenic CG7120 + chr3L 8396007 5` UTR CG7120 + chr3L_8_8395001 chr3L_8395001 RAL-223 1870 chr3L 8442900 8442906 chr3L 8443026 8443032 4 126 1.0 25.0 13.0 0.3 132 chr3L 8442900 intergenic CG6983 - chr3L 8442966 intergenic CG6983 - chr3L 8443032 intergenic CG6983 - chr3L_4_8440001 chr3L_8440001 RAL-223 1871 chr3L 8443522 8443582 chr3L 8443653 8443713 9 131 4.5 6.0 5.2 1.5 191 chr3L 8443522 3` UTR CG6983 - chr3L 8443618 3` UTR CG6983 - chr3L 8443713 3` UTR CG6983 - chr3L_9_8440001 chr3L_8440001 RAL-223 1872 chr3L 8456442 8456486 chr3L 8456573 8456592 16 126 27.0 25.5 26.2 0.6 150 chr3L 8456442 intron Gug + chr3L 8456517 intron Gug + chr3L 8456592 intron Gug + chr3L_16_8455001 chr3L_8455001 RAL-223 1873 chr3L 8481761 8481804 chr3L 8490965 8491013 roo 18 9206 8.0 11.5 9.8 1.7 9252 chr3L 8481761 intron CG43163 - chr3L 8486387 intron CG43163 - chr3L 8491013 intron CG43163 - chr3L_18_8485001 chr3L_8485001 RAL-223 1874 chr3L 8498248 8498315 chr3L 8505762 8505832 blood 18 7516 0.5 5.0 2.8 4.7 7584 chr3L 8498248 intron CG43163 - chr3L 8502040 intron CG43163 - chr3L 8505832 intron CG43163 - chr3L_18_8500001 chr3L_8500001 RAL-223 1875 chr3L 8577248 8577323 chr3L 8577403 8577474 37 154 7.5 8.5 8.0 4.1 226 chr3L 8577248 5` UTR CG43078 + chr3L 8577361 5` UTR CG43078 + chr3L 8577474 5` UTR CG43078 + chr3L_37_8575001 chr3L_8575001 RAL-223 1876 chr3L 8643529 8643603 chr3L 8643655 8643729 23 126 8.0 9.0 8.5 2.4 200 chr3L 8643529 3` UTR Cpr66D + chr3L 8643629 intergenic Cpr66D + chr3L 8643729 intergenic Cpr66D + chr3L_23_8640001 chr3L_8640001 RAL-223 1877 chr3L 8692952 8692967 chr3L 8693108 8693123 10 156 24.5 13.0 18.8 0.5 171 chr3L 8692952 5` UTR CR44526 + chr3L 8693038 5` UTR CR44526 + chr3L 8693123 5` UTR CR44526 + chr3L_10_8690001 chr3L_8690001 RAL-223 1878 chr3L 8692969 8693023 chr3L 8693105 8693169 31 155 12.5 11.5 12.0 2.4 200 chr3L 8692969 5` UTR CR44526 + chr3L 8693069 5` UTR CR44526 + chr3L 8693169 5` UTR CR44526 + chr3L_31_8690001 chr3L_8690001 RAL-223 1879 chr3L 8717211 8717273 chr3L 8717462 8717523 37 247 16.0 10.0 13.0 2.6 312 chr3L 8717211 intergenic not near genes chr3L 8717367 intergenic not near genes chr3L 8717523 intergenic not near genes chr3L_37_8715001 chr3L_8715001 RAL-223 1880 chr3L 8752364 8752413 chr3L 8752602 8752651 20 238 10.5 8.5 9.5 1.9 287 chr3L 8752364 intergenic not near genes chr3L 8752508 intergenic not near genes chr3L 8752651 intergenic not near genes chr3L_20_8750001 chr3L_8750001 RAL-223 1881 chr3L 8782100 8782148 chr3L 8782271 8782324 28 176 0.0 12.0 6.0 4.0 224 chr3L 8782100 intron Fhos + chr3L 8782212 intron Fhos + chr3L 8782324 intron Fhos + chr3L_28_8780001 chr3L_8780001 RAL-223 1882 chr3L 8784812 8784850 chr3L 8784945 8784983 18 133 10.5 8.0 9.2 1.8 171 chr3L 8784812 intron Fhos + chr3L 8784898 intron Fhos + chr3L 8784983 intron Fhos + chr3L_18_8780001 chr3L_8780001 RAL-223 1883 chr3L 8791248 8791302 chr3L 8796695 8796771 I-element 11 5467 7.5 0.0 3.8 2.3 5523 chr3L 8791248 exon Fhos + chr3L 8794010 intron Fhos + chr3L 8796771 intron Fhos + chr3L_11_8790001 chr3L_8790001 RAL-223 1884 chr3L 8812154 8812219 chr3L 8815261 8815313 13 3110 5.0 8.0 6.5 1.7 3159 chr3L 8812154 intergenic not near genes chr3L 8813734 intergenic not near genes chr3L 8815313 intergenic not near genes chr3L_13_8810001 chr3L_8810001 RAL-223 1885 chr3L 8839679 8839746 chr3L 8839809 8839876 10 130 6.5 3.5 5.0 1.7 197 chr3L 8839679 intron dally + chr3L 8839778 intron dally + chr3L 8839876 intron dally + chr3L_10_8835001 chr3L_8835001 RAL-223 1886 chr3L 8846065 8846125 chr3L 8846199 8846260 10 134 9.0 0.5 4.8 1.7 195 chr3L 8846065 intron dally + chr3L 8846162 intron dally + chr3L 8846260 intron dally + chr3L_10_8845001 chr3L_8845001 RAL-223 1887 chr3L 8849176 8849237 chr3L 8849301 8849367 18 127 10.0 10.5 10.2 1.6 191 chr3L 8849176 intron dally + chr3L 8849272 intron dally + chr3L 8849367 intron dally + chr3L_18_8845001 chr3L_8845001 RAL-223 1888 chr3L 8864081 8864107 chr3L 8864232 8864232 11 146 15.0 8.5 11.8 0.9 151 chr3L 8864081 intron dally + chr3L 8864156 intron dally + chr3L 8864232 intron dally + chr3L_11_8860001 chr3L_8860001 RAL-223 1889 chr3L 8950508 8950580 chr3L 8950652 8950722 20 143 8.0 11.0 9.5 1.9 214 chr3L 8950508 intron,intron CG43783 -,orb2 - chr3L 8950615 intron,intron CG43783 -,orb2 - chr3L 8950722 intron,intron CG43783 -,orb2 - chr3L_20_8950001 chr3L_8950001 RAL-223 1890 chr3L 8959349 8959357 chr3L 8959560 8959568 10 211 19.0 2.5 10.8 0.8 219 chr3L 8959349 intron CG13313 + chr3L 8959458 intron CG13313 + chr3L 8959568 intron CG13313 + chr3L_10_8955001 chr3L_8955001 RAL-223 1891 chr3L 9003899 9003970 chr3L 9004034 9004105 35 134 8.5 7.5 8.0 3.9 206 chr3L 9003899 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004105 intergenic not near genes chr3L_35_9000001 chr3L_9000001 RAL-223 1892 chr3L 9013690 9013695 chr3L 18417066 18417066 8 9403374 37.5 39.0 38.2 0.2 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-223 1893 chr3L 9024464 9024531 chr3L 9024594 9024661 26 128 6.5 9.5 8.0 2.9 197 chr3L 9024464 intergenic not near genes chr3L 9024562 intergenic not near genes chr3L 9024661 intergenic not near genes chr3L_26_9020001 chr3L_9020001 RAL-223 1894 chr3L 9030379 9030453 chr3L 9030508 9030582 15 129 5.0 4.5 4.8 2.6 203 chr3L 9030379 intergenic not near genes chr3L 9030480 intergenic not near genes chr3L 9030582 intergenic not near genes chr3L_15_9030001 chr3L_9030001 RAL-223 1895 chr3L 9036251 9036286 chr3L 9036387 9036417 22 135 19.0 18.0 18.5 1.1 166 chr3L 9036251 intergenic not near genes chr3L 9036334 intergenic not near genes chr3L 9036417 intergenic not near genes chr3L_22_9035001 chr3L_9035001 RAL-223 1896 chr3L 9040198 9040237 chr3L 9040395 9040434 17 196 7.0 10.0 8.5 1.8 236 chr3L 9040198 intergenic not near genes chr3L 9040316 intergenic not near genes chr3L 9040434 intergenic not near genes chr3L_17_9040001 chr3L_9040001 RAL-223 1897 chr3L 9042499 9042565 chr3L 9042627 9042691 22 126 10.5 12.0 11.2 1.8 192 chr3L 9042499 intron Doc1 + chr3L 9042595 intron Doc1 + chr3L 9042691 intron Doc1 + chr3L_22_9040001 chr3L_9040001 RAL-223 1898 chr3L 9047095 9047106 chr3L 9047232 9047243 5 137 0.0 12.0 6.0 0.7 148 chr3L 9047095 intergenic CG5144 + chr3L 9047169 intergenic CG5144 + chr3L 9047243 intergenic CG5144 + chr3L_5_9045001 chr3L_9045001 RAL-223 1899 chr3L 9061085 9061162 chr3L 9061243 9061320 33 155 6.0 9.5 7.8 3.7 235 chr3L 9061085 intron Argk - chr3L 9061202 intron Argk - chr3L 9061320 intron Argk - chr3L_33_9060001 chr3L_9060001 RAL-223 1900 chr3L 9076884 9076948 chr3L 9084494 9084558 412 24 7610 7.5 8.0 7.8 2.7 7674 chr3L 9076884 exon Tequila + chr3L 9080721 intron Tequila + chr3L 9084558 exon Tequila + chr3L_24_9080001 chr3L_9080001 RAL-223 1901 chr3L 9111098 9111169 chr3L 9111225 9111295 16 126 7.0 6.5 6.8 2.1 197 chr3L 9111098 intron bol - chr3L 9111196 intron bol - chr3L 9111295 intron bol - chr3L_16_9110001 chr3L_9110001 RAL-223 1902 chr3L 9130512 9130580 chr3L 9134323 9134391 412 21 3811 7.0 4.0 5.5 3.2 3879 chr3L 9130512 intergenic bol - chr3L 9132452 intergenic not near genes chr3L 9134391 intergenic Dhpr + chr3L_21_9130001 chr3L_9130001 RAL-223 1903 chr3L 9164654 9164683 chr3L 9166171 9166200 hobo 10 1517 21.5 0.5 11.0 0.8 1546 chr3L 9164654 intron Rdl - chr3L 9165427 intron Rdl - chr3L 9166200 intron Rdl - chr3L_10_9165001 chr3L_9165001 RAL-223 1904 chr3L 9191837 9191908 chr3L 9191966 9192013 14 137 9.0 0.5 4.8 2.4 176 chr3L 9191837 intergenic not near genes chr3L 9191925 intergenic not near genes chr3L 9192013 intergenic not near genes chr3L_14_9190001 chr3L_9190001 RAL-223 1905 chr3L 9219202 9219266 chr3L 9219924 9219972 jockey 16 721 9.5 11.5 10.5 1.4 770 chr3L 9219202 intergenic not near genes chr3L 9219587 intergenic not near genes chr3L 9219972 intergenic not near genes chr3L_16_9215001 chr3L_9215001 RAL-223 1906 chr3L 9220165 9220236 chr3L 9220298 9220369 30 132 8.0 9.0 8.5 3.2 204 chr3L 9220165 intergenic not near genes chr3L 9220267 intergenic not near genes chr3L 9220369 intergenic not near genes chr3L_30_9220001 chr3L_9220001 RAL-223 1907 chr3L 9234111 9234116 chr3L 9234243 9234248 4 132 6.0 6.5 6.2 0.6 137 chr3L 9234111 intergenic not near genes chr3L 9234180 intergenic not near genes chr3L 9234248 intergenic not near genes chr3L_4_9230001 chr3L_9230001 RAL-223 1908 chr3L 9237446 9237527 chr3L 9237575 9237651 17 128 5.0 0.0 2.5 4.9 205 chr3L 9237446 intergenic not near genes chr3L 9237548 intergenic not near genes chr3L 9237651 intergenic not near genes chr3L_17_9235001 chr3L_9235001 RAL-223 1909 chr3L 9270578 9270639 chr3L 9278383 9278441 roo 26 7799 8.5 8.0 8.2 2.8 7863 chr3L 9270578 intron GluRIB + chr3L 9274510 intron GluRIB + chr3L 9278441 exon GluRIB + chr3L_26_9270001 chr3L_9270001 RAL-223 1910 chr3L 9307796 9307796 chr3L 22908066 22908067 6 13600270 40.5 35.0 37.8 0.2 13600271 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_6_16105001 chr3L_16105001 RAL-223 1911 chr3L 9312676 9312733 chr3L 9312804 9312861 27 127 10.0 7.0 8.5 2.8 185 chr3L 9312676 intergenic not near genes chr3L 9312768 intergenic not near genes chr3L 9312861 intergenic not near genes chr3L_27_9310001 chr3L_9310001 RAL-223 1912 chr3L 9313988 9314063 chr3L 9314129 9314191 9 135 0.0 0.5 0.2 7.5 203 chr3L 9313988 intergenic not near genes chr3L 9314090 intergenic not near genes chr3L 9314191 intergenic not near genes chr3L_9_9310001 chr3L_9310001 RAL-223 1913 chr3L 9415116 9415174 chr3L 9415252 9415311 16 137 11.0 12.0 11.5 1.3 195 chr3L 9415116 intron CG3967 - chr3L 9415214 intron CG3967 - chr3L 9415311 intron CG3967 - chr3L_16_9415001 chr3L_9415001 RAL-223 1914 chr3L 9429473 9429541 chr3L 9429617 9429682 8 143 5.0 12.5 8.8 0.8 209 chr3L 9429473 intron,3` UTR RpS17 -,snoRNA:Psi28S-612 - chr3L 9429578 intron RpS17 - chr3L 9429682 intron RpS17 - chr3L_8_9425001 chr3L_9425001 RAL-223 1915 chr3L 9437894 9437903 chr3L 9438055 9438064 4 161 23.5 11.5 17.5 0.2 170 chr3L 9437894 intron MTF-1 + chr3L 9437979 intron MTF-1 + chr3L 9438064 intron MTF-1 + chr3L_4_9435001 chr3L_9435001 RAL-223 1916 chr3L 9437905 9437963 chr3L 9438052 9438124 29 160 11.0 11.5 11.2 2.4 219 chr3L 9437905 intron MTF-1 + chr3L 9438014 intron MTF-1 + chr3L 9438124 intron MTF-1 + chr3L_29_9435001 chr3L_9435001 RAL-223 1917 chr3L 9443491 9443537 chr3L 9445332 9445342 S-element 18 1839 10.5 18.5 14.5 1.2 1851 chr3L 9443491 intron CG33926 + chr3L 9444416 intron CG33926 + chr3L 9445342 intron CG33926 + chr3L_18_9440001 chr3L_9440001 RAL-223 1918 chr3L 9478130 9478138 chr3L 9478258 9478266 5 128 4.0 0.0 2.0 1.7 136 chr3L 9478130 intron Jarid2 + chr3L 9478198 intron Jarid2 + chr3L 9478266 intron Jarid2 + chr3L_5_9475001 chr3L_9475001 RAL-223 1919 chr3L 9492358 9492387 chr3L 9492489 9492511 11 130 21.5 0.0 10.8 0.9 153 chr3L 9492358 intergenic CG32037 - chr3L 9492434 intergenic CG32037 - chr3L 9492511 intergenic CG32037 - chr3L_11_9490001 chr3L_9490001 RAL-223 1920 chr3L 9498157 9498215 chr3L 9498284 9498342 22 125 12.0 5.5 8.8 2.2 185 chr3L 9498157 intron path - chr3L 9498250 intron path - chr3L 9498342 intron path - chr3L_22_9495001 chr3L_9495001 RAL-223 1921 chr3L 9501655 9501725 chr3L 9502191 9502261 roo 28 536 7.0 7.5 7.2 3.4 606 chr3L 9501655 intron path - chr3L 9501958 intron path - chr3L 9502261 intron path - chr3L_28_9500001 chr3L_9500001 RAL-223 1922 chr3L 9503415 9503459 chr3L 9503554 9503598 9 139 10.5 11.0 10.8 0.8 183 chr3L 9503415 intron path - chr3L 9503506 intron path - chr3L 9503598 intron path - chr3L_9_9500001 chr3L_9500001 RAL-223 1923 chr3L 9506669 9506696 chr3L 9506803 9506830 12 134 7.0 12.0 9.5 1.1 161 chr3L 9506669 intergenic CG3408 - chr3L 9506750 intergenic CG3408 - chr3L 9506830 3` UTR CG3408 - chr3L_12_9505001 chr3L_9505001 RAL-223 1924 chr3L 9513414 9513472 chr3L 9513551 9513609 17 137 6.0 4.5 5.2 2.7 195 chr3L 9513414 intergenic CG33702 - chr3L 9513512 intergenic CG33702 - chr3L 9513609 intergenic CG33702 - chr3L_17_9510001 chr3L_9510001 RAL-223 1925 chr3L 9524411 9524483 chr3L 9524547 9524619 32 136 5.0 10.0 7.5 3.8 208 chr3L 9524411 intron CG33700 - chr3L 9524515 intron CG33700 - chr3L 9524619 intron CG33700 - chr3L_32_9520001 chr3L_9520001 RAL-223 1926 chr3L 9533717 9533774 chr3L 9541327 9541369 412 14 7602 6.0 8.5 7.2 1.7 7652 chr3L 9533717 intergenic not near genes chr3L 9537543 intergenic not near genes chr3L 9541369 intergenic not near genes chr3L_14_9535001 chr3L_9535001 RAL-223 1927 chr3L 9571868 9571926 chr3L 9572266 9572324 jockey 24 397 11.0 6.0 8.5 2.5 456 chr3L 9571868 intron CG42673 + chr3L 9572096 intron CG42673 + chr3L 9572324 intron CG42673 + chr3L_24_9570001 chr3L_9570001 RAL-223 1928 chr3L 9575863 9575938 chr3L 9580991 9581067 jockey 22 5126 9.0 6.0 7.5 2.6 5204 chr3L 9575863 intron CG42673 + chr3L 9578465 intron CG42673 + chr3L 9581067 intron CG42673 + chr3L_22_9575001 chr3L_9575001 RAL-223 1929 chr3L 9629693 9629765 chr3L 9629819 9629891 14 126 4.0 8.0 6.0 2.0 198 chr3L 9629693 intron CG8336 + chr3L 9629792 intron CG8336 + chr3L 9629891 intron CG8336 + chr3L_14_9625001 chr3L_9625001 RAL-223 1930 chr3L 9674994 9675060 chr3L 9675355 9675421 20 360 9.0 9.0 9.0 2.0 427 chr3L 9674994 intron fry - chr3L 9675208 intron fry - chr3L 9675421 intron fry - chr3L_20_9675001 chr3L_9675001 RAL-223 1931 chr3L 9754663 9754707 chr3L 9754797 9754841 4 134 6.0 0.0 3.0 1.0 178 chr3L 9754663 intron CG42268 - chr3L 9754752 intron CG42268 - chr3L 9754841 intron CG42268 - chr3L_4_9750001 chr3L_9750001 RAL-223 1932 chr3L 9918835 9918861 chr3L 9918980 9919006 10 145 22.5 5.5 14.0 0.7 171 chr3L 9918835 intron CG34356 + chr3L 9918920 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-223 1933 chr3L 9918867 9918906 chr3L 9918976 9919051 16 142 7.0 5.0 6.0 2.3 184 chr3L 9918867 intron CG34356 + chr3L 9918959 intron CG34356 + chr3L 9919051 intron CG34356 + chr3L_16_9915001 chr3L_9915001 RAL-223 1934 chr3L 9929640 9929691 chr3L 9938444 9938520 roo 19 8828 8.5 7.0 7.8 2.2 8880 chr3L 9929640 intron CG34356 + chr3L 9934080 intron CG34356 + chr3L 9938520 intron CG34356 + chr3L_19_9930001 chr3L_9930001 RAL-223 1935 chr3L 9941006 9941058 chr3L 9941134 9941174 15 125 8.5 10.0 9.2 1.5 168 chr3L 9941006 intron CG34356 + chr3L 9941090 intron CG34356 + chr3L 9941174 intron CG34356 + chr3L_15_9940001 chr3L_9940001 RAL-223 1936 chr3L 9966785 9966835 chr3L 9970244 9970322 41 3462 61.5 59.5 60.5 0.7 3537 chr3L 9966785 3` UTR,3` UTR CG34356 +,CG6685 - chr3L 9968554 5` UTR Nc + chr3L 9970322 exon Nc + chr3L_41_9965001 chr3L_9965001 RAL-223 1937 chr3L 9976954 9976981 chr3L 9977085 9977112 6 131 0.0 4.0 2.0 2.0 158 chr3L 9976954 intron dpr6 + chr3L 9977033 intron dpr6 + chr3L 9977112 intron dpr6 + chr3L_6_9975001 chr3L_9975001 RAL-223 1938 chr3L 9994054 9994103 chr3L 9994190 9994237 14 136 5.0 15.0 10.0 1.3 183 chr3L 9994054 intron dpr6 + chr3L 9994146 intron dpr6 + chr3L 9994237 intron dpr6 + chr3L_14_9990001 chr3L_9990001 RAL-223 1939 chr3L 10003101 10003180 chr3L 10003248 10003312 22 146 4.0 5.0 4.5 4.0 211 chr3L 10003101 intron dpr6 + chr3L 10003206 intron dpr6 + chr3L 10003312 intron dpr6 + chr3L_22_10000001 chr3L_10000001 RAL-223 1940 chr3L 10011541 10011612 chr3L 10011668 10011744 26 132 6.5 6.5 6.5 3.5 203 chr3L 10011541 intron dpr6 + chr3L 10011642 intron dpr6 + chr3L 10011744 intron dpr6 + chr3L_26_10010001 chr3L_10010001 RAL-223 1941 chr3L 10019398 10019425 chr3L 10019541 10019569 10 142 24.5 7.5 16.0 0.6 171 chr3L 10019398 intron dpr6 + chr3L 10019484 intron dpr6 + chr3L 10019569 intron dpr6 + chr3L_10_10015001 chr3L_10015001 RAL-223 1942 chr3L 10032495 10032565 chr3L 10032631 10032702 8 136 0.0 6.0 3.0 2.0 207 chr3L 10032495 intron dpr6 + chr3L 10032598 intron dpr6 + chr3L 10032702 intron dpr6 + chr3L_8_10030001 chr3L_10030001 RAL-223 1943 chr3L 10049497 10049569 chr3L 10049627 10049699 29 130 8.0 12.0 10.0 2.6 202 chr3L 10049497 intron dpr6 + chr3L 10049598 intron dpr6 + chr3L 10049699 intron dpr6 + chr3L_29_10045001 chr3L_10045001 RAL-223 1944 chr3L 10060078 10060107 chr3L 10067707 10067736 17.6 9 7629 13.5 15.0 14.2 0.6 7658 chr3L 10060078 intron dpr6 + chr3L 10063907 intron dpr6 + chr3L 10067736 intron dpr6 + chr3L_9_10060001 chr3L_10060001 RAL-223 1945 chr3L 10082515 10082582 chr3L 10082647 10082714 20 131 0.5 6.0 3.2 4.8 199 chr3L 10082515 intron dpr6 + chr3L 10082614 intron dpr6 + chr3L 10082714 intron dpr6 + chr3L_20_10080001 chr3L_10080001 RAL-223 1946 chr3L 10099103 10099181 chr3L 10099270 10099344 25 164 3.5 8.5 6.0 3.6 241 chr3L 10099103 intron dpr6 + chr3L 10099224 intron dpr6 + chr3L 10099344 intron dpr6 + chr3L_25_10095001 chr3L_10095001 RAL-223 1947 chr3L 10145011 10145080 chr3L 10145230 10145299 25 217 7.0 9.5 8.2 2.7 288 chr3L 10145011 intergenic not near genes chr3L 10145155 intergenic not near genes chr3L 10145299 intergenic not near genes chr3L_25_10145001 chr3L_10145001 RAL-223 1948 chr3L 10181900 10181923 chr3L 10182154 10182177 5 254 6.5 15.0 10.8 0.4 277 chr3L 10181900 intron dpr10 - chr3L 10182038 intron dpr10 - chr3L 10182177 intron dpr10 - chr3L_5_10180001 chr3L_10180001 RAL-223 1949 chr3L 10189463 10189487 chr3L 10189698 10189722 7 233 18.0 8.0 13.0 0.5 259 chr3L 10189463 intergenic not near genes chr3L 10189592 intergenic not near genes chr3L 10189722 intergenic not near genes chr3L_7_10185001 chr3L_10185001 RAL-223 1950 chr3L 10248916 10249131 chr3L 10249044 10249238 12 126 0.5 1.5 1.0 6.0 322 chr3L 10248916 intergenic CR44540 - chr3L 10249077 intergenic CR44540 - chr3L 10249238 intergenic not near genes chr3L_12_10245001 chr3L_10245001 RAL-223 1951 chr3L 10255330 10255398 chr3L 10255473 10255546 12 147 0.0 4.0 2.0 4.0 216 chr3L 10255330 intergenic not near genes chr3L 10255438 intergenic not near genes chr3L 10255546 intergenic not near genes chr3L_12_10255001 chr3L_10255001 RAL-223 1952 chr3L 10282249 10282283 chr3L 10282388 10282422 11 139 2.5 7.5 5.0 1.8 173 chr3L 10282249 intergenic not near genes chr3L 10282336 intergenic not near genes chr3L 10282422 intergenic not near genes chr3L_11_10280001 chr3L_10280001 RAL-223 1953 chr3L 10298628 10298689 chr3L 10298760 10298826 16 136 0.0 3.0 1.5 6.4 198 chr3L 10298628 intergenic not near genes chr3L 10298727 intergenic not near genes chr3L 10298826 intergenic not near genes chr3L_16_10295001 chr3L_10295001 RAL-223 1954 chr3L 10300005 10300070 chr3L 10300147 10300212 12 140 4.5 6.5 5.5 1.8 207 chr3L 10300005 intergenic not near genes chr3L 10300108 intergenic not near genes chr3L 10300212 intergenic not near genes chr3L_12_10300001 chr3L_10300001 RAL-223 1955 chr3L 10308705 10308770 chr3L 10308832 10308897 25 126 3.0 13.5 8.2 2.7 192 chr3L 10308705 intergenic not near genes chr3L 10308801 intergenic not near genes chr3L 10308897 intergenic not near genes chr3L_25_10305001 chr3L_10305001 RAL-223 1956 chr3L 10310302 10310382 chr3L 10310449 10310529 26 146 5.5 4.0 4.8 4.5 227 chr3L 10310302 intergenic not near genes chr3L 10310416 intergenic not near genes chr3L 10310529 intergenic not near genes chr3L_26_10310001 chr3L_10310001 RAL-223 1957 chr3L 10328067 10328129 chr3L 10328229 10328286 13 161 6.5 10.0 8.2 1.4 219 chr3L 10328067 intergenic not near genes chr3L 10328176 intergenic not near genes chr3L 10328286 intergenic not near genes chr3L_13_10325001 chr3L_10325001 RAL-223 1958 chr3L 10348609 10348617 chr3L 10348776 10348784 7 167 18.5 0.0 9.2 0.7 175 chr3L 10348609 intron CR44327 + chr3L 10348696 intron CR44327 + chr3L 10348784 intron CR44327 + chr3L_7_10345001 chr3L_10345001 RAL-223 1959 chr3L 10348619 10348634 chr3L 10348771 10348801 7 165 12.5 0.0 6.2 1.0 182 chr3L 10348619 intron CR44327 + chr3L 10348710 intron CR44327 + chr3L 10348801 intron CR44327 + chr3L_7_10345001 chr3L_10345001 RAL-223 1960 chr3L 10367462 10367519 chr3L 10367589 10367646 20 127 5.5 0.0 2.8 5.3 184 chr3L 10367462 intergenic CR44327 + chr3L 10367554 intergenic CR44327 + chr3L 10367646 intergenic CR44327 + chr3L_20_10365001 chr3L_10365001 RAL-223 1961 chr3L 10386341 10386418 chr3L 10386468 10386539 25 127 11.0 6.5 8.8 2.6 198 chr3L 10386341 intergenic CR45245 + chr3L 10386440 intergenic CR45245 + chr3L 10386539 5` UTR CR45245 + chr3L_25_10385001 chr3L_10385001 RAL-223 1962 chr3L 10414897 10414966 chr3L 10417317 10417388 Doc 17 2421 4.0 6.5 5.2 2.7 2491 chr3L 10414897 intergenic CG12362 + chr3L 10416142 intergenic not near genes chr3L 10417388 intergenic not near genes chr3L_17_10415001 chr3L_10415001 RAL-223 1963 chr3L 10417527 10417591 chr3L 10417654 10417703 22 124 7.0 9.5 8.2 2.4 176 chr3L 10417527 intergenic not near genes chr3L 10417615 intergenic not near genes chr3L 10417703 intergenic not near genes chr3L_22_10415001 chr3L_10415001 RAL-223 1964 chr3L 10450629 10450707 chr3L 10450776 10450837 11 132 0.0 5.5 2.8 2.9 208 chr3L 10450629 intergenic not near genes chr3L 10450733 intergenic not near genes chr3L 10450837 intergenic not near genes chr3L_11_10450001 chr3L_10450001 RAL-223 1965 chr3L 10504298 10504339 chr3L 10504427 10504467 15 129 17.5 10.0 13.8 1.0 169 chr3L 10504298 intron A2bp1 + chr3L 10504382 intron A2bp1 + chr3L 10504467 intron A2bp1 + chr3L_15_10500001 chr3L_10500001 RAL-223 1966 chr3L 10518539 10518608 chr3L 10518724 10518793 24 185 6.0 10.5 8.2 2.6 254 chr3L 10518539 intron A2bp1 + chr3L 10518666 intron A2bp1 + chr3L 10518793 intron A2bp1 + chr3L_24_10515001 chr3L_10515001 RAL-223 1967 chr3L 10584230 10584296 chr3L 10584367 10584433 22 137 6.5 2.0 4.2 4.2 203 chr3L 10584230 intron A2bp1 + chr3L 10584332 intron A2bp1 + chr3L 10584433 intron A2bp1 + chr3L_22_10580001 chr3L_10580001 RAL-223 1968 chr3L 10600405 10600476 chr3L 10600537 10600608 22 131 3.5 2.5 3.0 5.5 203 chr3L 10600405 intergenic not near genes chr3L 10600506 intergenic not near genes chr3L 10600608 intergenic not near genes chr3L_22_10600001 chr3L_10600001 RAL-223 1969 chr3L 10621803 10621873 chr3L 10621940 10622010 21 135 3.5 7.5 5.5 3.2 207 chr3L 10621803 intergenic not near genes chr3L 10621906 intergenic not near genes chr3L 10622010 intergenic not near genes chr3L_21_10620001 chr3L_10620001 RAL-223 1970 chr3L 10653295 10653357 chr3L 10653430 10653492 26 134 5.5 8.0 6.8 3.3 197 chr3L 10653295 intron CG32066 - chr3L 10653394 intron CG32066 - chr3L 10653492 intron CG32066 - chr3L_26_10650001 chr3L_10650001 RAL-223 1971 chr3L 10654079 10654150 chr3L 10654216 10654291 16 132 9.5 9.0 9.2 1.6 212 chr3L 10654079 intron CG32066 - chr3L 10654185 intron CG32066 - chr3L 10654291 intron CG32066 - chr3L_16_10650001 chr3L_10650001 RAL-223 1972 chr3L 10654929 10654996 chr3L 10655059 10655126 26 128 7.5 7.5 7.5 3.1 197 chr3L 10654929 intron CG32066 - chr3L 10655028 intron CG32066 - chr3L 10655126 intron CG32066 - chr3L_26_10655001 chr3L_10655001 RAL-223 1973 chr3L 10683484 10683553 chr3L 10683720 10683797 28 235 8.5 9.0 8.8 2.9 313 chr3L 10683484 intron simj + chr3L 10683640 intron simj + chr3L 10683797 intron simj + chr3L_28_10680001 chr3L_10680001 RAL-223 1974 chr3L 10706548 10706565 chr3L 10706730 10706747 5 182 0.0 5.0 2.5 1.4 199 chr3L 10706548 intergenic not near genes chr3L 10706648 intergenic not near genes chr3L 10706747 intergenic not near genes chr3L_5_10705001 chr3L_10705001 RAL-223 1975 chr3L 10729757 10729835 chr3L 10729885 10729963 17 127 9.0 1.5 5.2 2.7 206 chr3L 10729757 intergenic not near genes chr3L 10729860 intergenic not near genes chr3L 10729963 intergenic not near genes chr3L_17_10725001 chr3L_10725001 RAL-223 1976 chr3L 10735788 10735806 chr3L 10735925 10735943 10 137 3.0 0.0 1.5 4.0 155 chr3L 10735788 intergenic not near genes chr3L 10735866 intergenic not near genes chr3L 10735943 intergenic not near genes chr3L_10_10735001 chr3L_10735001 RAL-223 1977 chr3L 10739760 10739776 chr3L 10739894 10739910 6 134 9.5 0.0 4.8 1.0 150 chr3L 10739760 intergenic not near genes chr3L 10739835 intergenic not near genes chr3L 10739910 intergenic not near genes chr3L_6_10735001 chr3L_10735001 RAL-223 1978 chr3L 10745492 10745557 chr3L 10745622 10745687 22 130 15.5 4.0 9.8 2.0 195 chr3L 10745492 intergenic not near genes chr3L 10745590 intergenic not near genes chr3L 10745687 intergenic not near genes chr3L_22_10745001 chr3L_10745001 RAL-223 1979 chr3L 10762791 10762797 chr3L 10762925 10762931 4 134 23.5 11.0 17.2 0.2 140 chr3L 10762791 intergenic not near genes chr3L 10762861 intergenic not near genes chr3L 10762931 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-223 1980 chr3L 10762798 10762851 chr3L 10762919 10762985 17 130 12.5 9.5 11.0 1.4 187 chr3L 10762798 intergenic not near genes chr3L 10762892 intergenic not near genes chr3L 10762985 intergenic not near genes chr3L_17_10760001 chr3L_10760001 RAL-223 1981 chr3L 10769350 10769432 chr3L 10769537 10769613 25 179 0.0 5.0 2.5 7.1 263 chr3L 10769350 intergenic not near genes chr3L 10769482 intergenic not near genes chr3L 10769613 intergenic not near genes chr3L_25_10765001 chr3L_10765001 RAL-223 1982 chr3L 10844356 10844371 chr3L 10844485 10844500 9 129 0.0 10.5 5.2 1.5 144 chr3L 10844356 intergenic not near genes chr3L 10844428 intergenic not near genes chr3L 10844500 intergenic not near genes chr3L_9_10840001 chr3L_10840001 RAL-223 1983 chr3L 10887362 10887367 chr3L 10887486 10887496 4 128 0.0 18.0 9.0 0.4 134 chr3L 10887362 intergenic not near genes chr3L 10887429 intergenic not near genes chr3L 10887496 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-223 1984 chr3L 10941701 10941759 chr3L 10941831 10941889 14 121 8.5 5.5 7.0 1.8 188 chr3L 10941701 intergenic not near genes chr3L 10941795 intergenic not near genes chr3L 10941889 intergenic not near genes chr3L_14_10940001 chr3L_10940001 RAL-223 1985 chr3L 10942031 10942072 chr3L 10942143 10942205 13 123 9.5 10.5 10.0 1.2 174 chr3L 10942031 intergenic not near genes chr3L 10942118 intergenic not near genes chr3L 10942205 intergenic not near genes chr3L_13_10940001 chr3L_10940001 RAL-223 1986 chr3L 10956404 10956458 chr3L 10956572 10956626 18 168 5.0 5.0 5.0 3.0 222 chr3L 10956404 intergenic not near genes chr3L 10956515 intergenic not near genes chr3L 10956626 intergenic not near genes chr3L_18_10955001 chr3L_10955001 RAL-223 1987 chr3L 10958164 10958189 chr3L 10958296 10958321 12 132 15.0 0.5 7.8 1.4 157 chr3L 10958164 intergenic not near genes chr3L 10958242 intergenic not near genes chr3L 10958321 intergenic not near genes chr3L_12_10955001 chr3L_10955001 RAL-223 1988 chr3L 10968663 10968714 chr3L 10968795 10968847 8 133 7.0 0.0 3.5 1.8 184 chr3L 10968663 intergenic not near genes chr3L 10968755 intergenic not near genes chr3L 10968847 intergenic not near genes chr3L_8_10965001 chr3L_10965001 RAL-223 1989 chr3L 10971473 10971542 chr3L 10971868 10971937 25 394 8.0 11.0 9.5 2.4 464 chr3L 10971473 intergenic not near genes chr3L 10971705 intergenic not near genes chr3L 10971937 intergenic not near genes chr3L_25_10970001 chr3L_10970001 RAL-223 1990 chr3L 11053613 11053643 chr3L 11053753 11053783 11 140 11.0 0.5 5.8 1.6 170 chr3L 11053613 intergenic CG7888 + chr3L 11053698 intergenic CG7888 + chr3L 11053783 intergenic CG7888 + chr3L_11_11050001 chr3L_11050001 RAL-223 1991 chr3L 11087008 11087089 chr3L 11088846 11088921 S-element 22 1838 7.0 7.0 7.0 2.8 1913 chr3L 11087008 intron JIL-1 - chr3L 11087964 intron JIL-1 - chr3L 11088921 intron JIL-1 - chr3L_22_11085001 chr3L_11085001 RAL-223 1992 chr3L 11103448 11103461 chr3L 11103561 11103600 7 131 12.5 7.5 10.0 0.6 152 chr3L 11103448 exon CG32071 - chr3L 11103524 exon CG32071 - chr3L 11103600 exon CG32071 - chr3L_7_11100001 chr3L_11100001 RAL-223 1993 chr3L 11104028 11104107 chr3L 11104157 11104232 7 130 6.0 1.5 3.8 1.5 204 chr3L 11104028 intergenic CG32071 - chr3L 11104130 intergenic CG32071 - chr3L 11104232 intergenic CG32071 - chr3L_7_11100001 chr3L_11100001 RAL-223 1994 chr3L 11105037 11105054 chr3L 11105169 11105186 10 132 5.5 12.5 9.0 1.0 149 chr3L 11105037 intergenic not near genes chr3L 11105112 intergenic not near genes chr3L 11105186 intergenic not near genes chr3L_10_11105001 chr3L_11105001 RAL-223 1995 chr3L 11105247 11105321 chr3L 11107007 11107015 X-element 27 1757 5.5 6.5 6.0 3.9 1768 chr3L 11105247 intergenic not near genes chr3L 11106131 intergenic not near genes chr3L 11107015 3` UTR CG32073 - chr3L_27_11105001 chr3L_11105001 RAL-223 1996 chr3L 11113945 11113982 chr3L 11114072 11114109 7 124 10.5 0.0 5.2 1.1 164 chr3L 11113945 intergenic Sod -,fd68A - chr3L 11114027 intergenic fd68A -,Sod - chr3L 11114109 intergenic fd68A -,Sod - chr3L_7_11110001 chr3L_11110001 RAL-223 1997 chr3L 11134316 11134381 chr3L 11134463 11134526 20 147 8.0 5.0 6.5 2.7 210 chr3L 11134316 3` UTR CG42575 + chr3L 11134421 3` UTR CG42575 + chr3L 11134526 3` UTR CG42575 + chr3L_20_11130001 chr3L_11130001 RAL-223 1998 chr3L 11145540 11145551 chr3L 11145678 11145689 4 138 0.0 10.5 5.2 0.6 149 chr3L 11145540 intron CG32082 + chr3L 11145614 intron CG32082 + chr3L 11145689 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-223 1999 chr3L 11224521 11224576 chr3L 11224693 11224747 11 171 0.0 11.5 5.8 1.6 226 chr3L 11224521 intron CG42671 + chr3L 11224634 intron CG42671 + chr3L 11224747 intron CG42671 + chr3L_11_11220001 chr3L_11220001 RAL-223 2000 chr3L 11241728 11241792 chr3L 11241860 11241924 20 132 2.0 2.0 2.0 6.7 196 chr3L 11241728 intergenic not near genes chr3L 11241826 intergenic not near genes chr3L 11241924 intergenic not near genes chr3L_20_11240001 chr3L_11240001 RAL-223 2001 chr3L 11245037 11245109 chr3L 11245179 11245251 28 141 12.5 9.5 11.0 2.3 214 chr3L 11245037 intergenic not near genes chr3L 11245144 intergenic not near genes chr3L 11245251 intergenic not near genes chr3L_28_11245001 chr3L_11245001 RAL-223 2002 chr3L 11249812 11249884 chr3L 11249945 11250017 23 133 10.5 8.5 9.5 2.2 205 chr3L 11249812 5` UTR CR44717 + chr3L 11249914 5` UTR CR44717 + chr3L 11250017 5` UTR CR44717 + chr3L_23_11245001 chr3L_11245001 RAL-223 2003 chr3L 11264419 11264483 chr3L 11271421 11271485 17.6 25 7001 10.0 10.0 10.0 2.3 7066 chr3L 11264419 intergenic not near genes chr3L 11267952 intergenic not near genes chr3L 11271485 intergenic not near genes chr3L_25_11265001 chr3L_11265001 RAL-223 2004 chr3L 11274039 11274085 chr3L 11274218 11274264 18 178 0.0 9.0 4.5 3.3 225 chr3L 11274039 3` UTR CR44720 - chr3L 11274152 3` UTR CR44720 - chr3L 11274264 3` UTR CR44720 - chr3L_18_11270001 chr3L_11270001 RAL-223 2005 chr3L 11290577 11290650 chr3L 11290950 11291023 24 373 11.5 10.5 11.0 2.0 446 chr3L 11290577 intron CG6175 - chr3L 11290800 intron CG6175 - chr3L 11291023 intron CG6175 - chr3L_24_11290001 chr3L_11290001 RAL-223 2006 chr3L 11329639 11329713 chr3L 11332894 11332953 jockey 30 3252 10.0 6.0 8.0 3.3 3314 chr3L 11329639 intergenic not near genes chr3L 11331296 intergenic not near genes chr3L 11332953 intergenic not near genes chr3L_30_11330001 chr3L_11330001 RAL-223 2007 chr3L 11334848 11334922 chr3L 11334974 11335048 7 125 10.0 14.5 12.2 0.5 200 chr3L 11334848 intergenic not near genes chr3L 11334948 intergenic not near genes chr3L 11335048 intergenic not near genes chr3L_7_11330001 chr3L_11330001 RAL-223 2008 chr3L 11383922 11383955 chr3L 11384051 11384079 10 128 11.5 6.5 9.0 1.0 157 chr3L 11383922 intron CR42755 - chr3L 11384000 3` UTR CR42755 - chr3L 11384079 3` UTR CR42755 - chr3L_10_11380001 chr3L_11380001 RAL-223 2009 chr3L 11386052 11386085 chr3L 11386179 11386205 12 126 13.5 13.5 13.5 0.8 153 chr3L 11386052 intergenic not near genes chr3L 11386128 intergenic not near genes chr3L 11386205 intergenic not near genes chr3L_12_11385001 chr3L_11385001 RAL-223 2010 chr3L 11435513 11435591 chr3L 11435732 11435795 48 218 8.0 11.0 9.5 4.6 282 chr3L 11435513 intergenic CG6149 -,CR44548 + chr3L 11435654 5` UTR CR44548 + chr3L 11435795 5` UTR CR44548 + chr3L_48_11435001 chr3L_11435001 RAL-223 2011 chr3L 11441355 11441368 chr3L 11441484 11441497 4 129 0.0 8.5 4.2 0.8 142 chr3L 11441355 intergenic not near genes chr3L 11441426 intergenic not near genes chr3L 11441497 intergenic not near genes chr3L_4_11440001 chr3L_11440001 RAL-223 2012 chr3L 11474592 11474644 chr3L 11474731 11474783 12 139 8.5 0.0 4.2 2.3 191 chr3L 11474592 intergenic Vha16-2 + chr3L 11474688 intergenic Vha16-2 + chr3L 11474783 intergenic Vha16-2 + chr3L_12_11470001 chr3L_11470001 RAL-223 2013 chr3L 11534783 11534796 chr3L 11534922 11534935 4 139 27.0 8.0 17.5 0.2 152 chr3L 11534783 intron Mob2 - chr3L 11534859 intron Mob2 - chr3L 11534935 intron Mob2 - chr3L_4_11530001 chr3L_11530001 RAL-223 2014 chr3L 11534797 11534857 chr3L 11534921 11534995 29 135 11.5 8.0 9.8 2.7 198 chr3L 11534797 intron Mob2 - chr3L 11534896 intron Mob2 - chr3L 11534995 intron Mob2 - chr3L_29_11530001 chr3L_11530001 RAL-223 2015 chr3L 11553686 11553731 chr3L 11553835 11553883 18 152 6.0 8.5 7.2 2.2 197 chr3L 11553686 intron Mob2 - chr3L 11553784 intron Mob2 - chr3L 11553883 intron Mob2 - chr3L_18_11550001 chr3L_11550001 RAL-223 2016 chr3L 11579505 11579584 chr3L 11579661 11579740 40 156 9.5 4.5 7.0 5.0 235 chr3L 11579505 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579740 intergenic CG43390 - chr3L_40_11575001 chr3L_11575001 RAL-223 2017 chr3L 11590218 11590272 chr3L 11590358 11590412 20 139 2.5 5.5 4.0 4.0 194 chr3L 11590218 intergenic CG7377 + chr3L 11590315 intergenic CG7377 + chr3L 11590412 intergenic CG7377 +,CG33268 - chr3L_20_11590001 chr3L_11590001 RAL-223 2018 chr3L 11663741 11663792 chr3L 11663879 11663930 10 138 10.5 0.0 5.2 1.6 189 chr3L 11663741 intron CG32085 - chr3L 11663836 intron CG32085 - chr3L 11663930 intron CG32085 - chr3L_10_11660001 chr3L_11660001 RAL-223 2019 chr3L 11671014 11671055 chr3L 11671212 11671254 8 200 0.0 0.0 0.0 8.0 240 chr3L 11671014 intron CG32085 - chr3L 11671134 intron CG32085 - chr3L 11671254 intron CG32085 - chr3L_8_11670001 chr3L_11670001 RAL-223 2020 chr3L 11673936 11673949 chr3L 11674062 11674075 7 126 18.5 0.0 9.2 0.7 139 chr3L 11673936 intron CG32085 - chr3L 11674006 intron CG32085 - chr3L 11674075 intron CG32085 - chr3L_7_11670001 chr3L_11670001 RAL-223 2021 chr3L 11678052 11678123 chr3L 11678189 11678260 16 137 3.5 0.0 1.8 5.7 208 chr3L 11678052 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678260 intron CG32085 - chr3L_16_11675001 chr3L_11675001 RAL-223 2022 chr3L 11692133 11692204 chr3L 11692517 11692588 32 383 11.0 10.5 10.8 2.7 455 chr3L 11692133 exon CG14135 + chr3L 11692360 intron CG14135 + chr3L 11692588 exon CG14135 + chr3L_32_11690001 chr3L_11690001 RAL-223 2023 chr3L 11711698 11711727 chr3L 11711842 11711871 15 144 5.0 10.5 7.8 1.7 173 chr3L 11711698 intergenic crim - chr3L 11711784 intergenic crim -,CG14132 - chr3L 11711871 intergenic CG14132 -,crim - chr3L_15_11710001 chr3L_11710001 RAL-223 2024 chr3L 11723039 11723104 chr3L 11727884 11727949 Doc 20 4845 9.0 9.0 9.0 2.0 4910 chr3L 11723039 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727949 3` UTR Bmcp + chr3L_20_11725001 chr3L_11725001 RAL-223 2025 chr3L 11743983 11744044 chr3L 11744131 11744202 18 157 11.0 1.5 6.2 2.5 219 chr3L 11743983 exon CG6024 - chr3L 11744092 intron CG6024 - chr3L 11744202 intron CG6024 - chr3L_18_11740001 chr3L_11740001 RAL-223 2026 chr3L 11746619 11746681 chr3L 11746748 11746810 14 129 0.0 11.0 5.5 2.2 191 chr3L 11746619 intron CG6024 - chr3L 11746714 intron CG6024 - chr3L 11746810 intron CG6024 - chr3L_14_11745001 chr3L_11745001 RAL-223 2027 chr3L 11846352 11846403 chr3L 11846510 11846561 14 157 0.0 10.0 5.0 2.3 209 chr3L 11846352 intergenic not near genes chr3L 11846456 intergenic not near genes chr3L 11846561 intergenic not near genes chr3L_14_11845001 chr3L_11845001 RAL-223 2028 chr3L 11847091 11847167 chr3L 11847231 11847297 14 139 3.5 0.0 1.8 5.0 206 chr3L 11847091 intergenic CG12521 - chr3L 11847194 intergenic CG12521 - chr3L 11847297 intergenic CG12521 - chr3L_14_11845001 chr3L_11845001 RAL-223 2029 chr3L 11849282 11849287 chr3L 11849432 11849437 4 150 24.0 7.5 15.8 0.2 155 chr3L 11849282 intergenic not near genes chr3L 11849360 intergenic not near genes chr3L 11849437 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-223 2030 chr3L 11849291 11849356 chr3L 11849431 11849506 29 149 6.0 7.5 6.8 3.7 215 chr3L 11849291 intergenic not near genes chr3L 11849398 intergenic not near genes chr3L 11849506 intergenic not near genes chr3L_29_11845001 chr3L_11845001 RAL-223 2031 chr3L 11850090 11850133 chr3L 11850235 11850246 18 143 15.0 0.0 7.5 2.1 156 chr3L 11850090 intergenic not near genes chr3L 11850168 intergenic CG44837 - chr3L 11850246 intergenic CG44837 - chr3L_18_11850001 chr3L_11850001 RAL-223 2032 chr3L 11864505 11864574 chr3L 11865850 11865919 pogo 28 1344 10.0 10.0 10.0 2.5 1414 chr3L 11864505 intron CG44837 - chr3L 11865212 intron CG44837 - chr3L 11865919 intron CG44837 - chr3L_28_11865001 chr3L_11865001 RAL-223 2033 chr3L 11887208 11887269 chr3L 11887355 11887416 25 147 5.5 0.0 2.8 6.6 208 chr3L 11887208 intron CG44837 - chr3L 11887312 intron,3` UTR CG44837 -,CG5897 - chr3L 11887416 intron,3` UTR CG44837 -,CG5897 - chr3L_25_11885001 chr3L_11885001 RAL-223 2034 chr3L 11903000 11903063 chr3L 11903328 11903399 8 332 3.0 2.0 2.5 2.3 399 chr3L 11903000 intron CG44837 - chr3L 11903200 intron CG44837 - chr3L 11903399 intron CG44837 - chr3L_8_11900001 chr3L_11900001 RAL-223 2035 chr3L 11943446 11943520 chr3L 11943597 11943671 23 151 4.5 6.0 5.2 3.7 225 chr3L 11943446 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943671 3` UTR CG5883 - chr3L_23_11940001 chr3L_11940001 RAL-223 2036 chr3L 12013861 12013938 chr3L 12014002 12014060 33 140 5.5 5.0 5.2 5.3 199 chr3L 12013861 intron rols - chr3L 12013960 intron rols - chr3L 12014060 intron rols - chr3L_33_12010001 chr3L_12010001 RAL-223 2037 chr3L 12019278 12019344 chr3L 12019440 12019507 13 163 4.0 9.5 6.8 1.7 229 chr3L 12019278 intron rols - chr3L 12019392 intron rols - chr3L 12019507 intron rols - chr3L_13_12015001 chr3L_12015001 RAL-223 2038 chr3L 12075380 12075458 chr3L 12075519 12075592 16 136 3.5 0.0 1.8 5.7 212 chr3L 12075380 intron Sema-5c - chr3L 12075486 intron Sema-5c - chr3L 12075592 intron Sema-5c - chr3L_16_12075001 chr3L_12075001 RAL-223 2039 chr3L 12089032 12089110 chr3L 12089162 12089240 30 130 6.0 2.5 4.2 5.8 208 chr3L 12089032 exon CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089240 intergenic CG17154 + chr3L_30_12085001 chr3L_12085001 RAL-223 2040 chr3L 12092349 12092408 chr3L 12092476 12092535 21 127 7.5 8.0 7.8 2.4 186 chr3L 12092349 intergenic not near genes chr3L 12092442 intergenic not near genes chr3L 12092535 intergenic not near genes chr3L_21_12090001 chr3L_12090001 RAL-223 2041 chr3L 12103866 12103922 chr3L 12103992 12104048 17 126 6.0 4.5 5.2 2.7 182 chr3L 12103866 intergenic not near genes chr3L 12103957 intergenic not near genes chr3L 12104048 intergenic not near genes chr3L_17_12100001 chr3L_12100001 RAL-223 2042 chr3L 12105935 12105998 chr3L 12106072 12106136 22 137 9.5 7.0 8.2 2.4 201 chr3L 12105935 intergenic not near genes chr3L 12106036 intergenic not near genes chr3L 12106136 intergenic not near genes chr3L_22_12105001 chr3L_12105001 RAL-223 2043 chr3L 12113777 12113793 chr3L 12113903 12113919 9 126 8.5 17.5 13.0 0.6 142 chr3L 12113777 intergenic not near genes chr3L 12113848 intergenic not near genes chr3L 12113919 intergenic not near genes chr3L_9_12110001 chr3L_12110001 RAL-223 2044 chr3L 12115692 12115743 chr3L 12115848 12115900 10 157 6.5 0.0 3.2 2.4 208 chr3L 12115692 intergenic l(3)j2D3 + chr3L 12115796 intergenic l(3)j2D3 + chr3L 12115900 intergenic l(3)j2D3 + chr3L_10_12115001 chr3L_12115001 RAL-223 2045 chr3L 12121093 12121126 chr3L 12121240 12121273 7 147 12.0 1.0 6.5 0.9 180 chr3L 12121093 3` UTR CG11560 + chr3L 12121183 3` UTR CG11560 + chr3L 12121273 3` UTR yps - chr3L_7_12120001 chr3L_12120001 RAL-223 2046 chr3L 12157126 12157139 chr3L 12158364 12158377 7 1238 68.5 72.0 70.2 0.1 1251 chr3L 12157126 3` UTR CG9760 - chr3L 12157752 3` UTR CG9760 - chr3L 12158377 intron CG9760 - chr3L_7_12155001 chr3L_12155001 RAL-223 2047 chr3L 12157163 12157191 chr3L 12158377 12158429 7 1235 71.5 70.0 70.8 0.1 1266 chr3L 12157163 3` UTR CG9760 - chr3L 12157796 3` UTR CG9760 - chr3L 12158429 intron CG9760 - chr3L_7_12155001 chr3L_12155001 RAL-223 2048 chr3L 12158446 12158524 chr3L 12158716 12158795 35 270 49.0 47.0 48.0 0.7 349 chr3L 12158446 intron CG9760 - chr3L 12158620 intron CG9760 - chr3L 12158795 intron CG9760 - chr3L_35_12155001 chr3L_12155001 RAL-223 2049 chr3L 12158779 12158848 chr3L 12160199 12160268 79 1422 192.5 176.0 184.2 0.4 1489 chr3L 12158779 intron CG9760 - chr3L 12159524 exon CG9760 - chr3L 12160268 intron CG9760 - chr3L_79_12155001 chr3L_12155001 RAL-223 2050 chr3L 12156445 12156450 chr3L 12160280 12160285 6 3835 61.5 123.5 92.5 0.1 3840 chr3L 12156445 3` UTR Nrx-IV + chr3L 12158365 intron CG9760 - chr3L 12160285 intron CG9760 - chr3L_6_12155001 chr3L_12155001 RAL-223 2051 chr3L 12156437 12156451 chr3L 12160288 12160306 11 3839 62.5 114.5 88.5 0.1 3869 chr3L 12156437 3` UTR Nrx-IV + chr3L 12158372 intron CG9760 - chr3L 12160306 intron CG9760 - chr3L_11_12155001 chr3L_12155001 RAL-223 2052 chr3L 12156431 12156517 chr3L 12160307 12160349 24 3835 94.0 92.0 93.0 0.3 3918 chr3L 12156431 3` UTR Nrx-IV + chr3L 12158390 intron CG9760 - chr3L 12160349 intron CG9760 - chr3L_24_12155001 chr3L_12155001 RAL-223 2053 chr3L 12170744 12170818 chr3L 12170876 12170950 14 132 2.0 8.5 5.2 2.3 206 chr3L 12170744 intron Rh7 - chr3L 12170847 intron Rh7 - chr3L 12170950 intron Rh7 - chr3L_14_12170001 chr3L_12170001 RAL-223 2054 chr3L 12186366 12186397 chr3L 12186532 12186563 10 166 6.5 7.5 7.0 1.2 197 chr3L 12186366 intron CG6910 + chr3L 12186464 intron CG6910 + chr3L 12186563 exon CG6910 + chr3L_10_12185001 chr3L_12185001 RAL-223 2055 chr3L 12235815 12235874 chr3L 12235955 12235958 20 136 0.0 8.0 4.0 4.0 143 chr3L 12235815 intron app - chr3L 12235886 intron app - chr3L 12235958 intron app - chr3L_20_12235001 chr3L_12235001 RAL-223 2056 chr3L 12251619 12251634 chr3L 12251745 12251760 8 126 7.5 12.5 10.0 0.7 141 chr3L 12251619 intron app - chr3L 12251690 intron app - chr3L 12251760 intron app - chr3L_8_12250001 chr3L_12250001 RAL-223 2057 chr3L 12290203 12290289 chr3L 12290343 12290433 4 143 0.0 0.0 0.0 4.0 230 chr3L 12290203 intergenic CR45658 - chr3L 12290318 intergenic CR45658 - chr3L 12290433 intergenic CR45658 - chr3L_4_12290001 chr3L_12290001 RAL-223 2058 chr3L 12297457 12297471 chr3L 12297667 12297681 6 210 5.5 0.0 2.8 1.6 224 chr3L 12297457 intergenic not near genes chr3L 12297569 intergenic not near genes chr3L 12297681 intergenic not near genes chr3L_6_12295001 chr3L_12295001 RAL-223 2059 chr3L 12300800 12300871 chr3L 12300989 12301060 37 189 11.0 15.5 13.2 2.6 260 chr3L 12300800 intergenic CR44550 + chr3L 12300930 intergenic CR44550 + chr3L 12301060 5` UTR CR44550 + chr3L_37_12300001 chr3L_12300001 RAL-223 2060 chr3L 12339514 12339574 chr3L 12339647 12339707 25 133 1.5 9.0 5.2 4.0 193 chr3L 12339514 3` UTR CrzR - chr3L 12339610 3` UTR CrzR - chr3L 12339707 3` UTR CrzR - chr3L_25_12335001 chr3L_12335001 RAL-223 2061 chr3L 12369487 12369562 chr3L 12369627 12369702 26 140 5.0 6.5 5.8 3.8 215 chr3L 12369487 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369702 intron Ncc69 - chr3L_26_12365001 chr3L_12365001 RAL-223 2062 chr3L 12381490 12381547 chr3L 12381618 12381675 12 127 7.0 3.5 5.2 1.9 185 chr3L 12381490 intron Ncc69 - chr3L 12381582 intron Ncc69 - chr3L 12381675 intron Ncc69 - chr3L_12_12380001 chr3L_12380001 RAL-223 2063 chr3L 12412687 12412925 chr3L 12412822 12413057 49 134 4.0 4.0 4.0 9.8 370 chr3L 12412687 intron CG32103 - chr3L 12412872 intron CG32103 - chr3L 12413057 intron CG32103 - chr3L_49_12410001 chr3L_12410001 RAL-223 2064 chr3L 12446236 12446297 chr3L 12446349 12446425 20 111 7.0 4.5 5.8 2.9 189 chr3L 12446236 intergenic not near genes chr3L 12446330 intergenic not near genes chr3L 12446425 intergenic not near genes chr3L_20_12445001 chr3L_12445001 RAL-223 2065 chr3L 12458485 12458505 chr3L 12458634 12458654 8 149 4.0 11.5 7.8 0.9 169 chr3L 12458485 intergenic not near genes chr3L 12458570 intergenic not near genes chr3L 12458654 intergenic not near genes chr3L_8_12455001 chr3L_12455001 RAL-223 2066 chr3L 12467211 12467283 chr3L 12467346 12467418 11 134 2.0 10.0 6.0 1.6 207 chr3L 12467211 intron eyg - chr3L 12467314 intron eyg - chr3L 12467418 intron eyg - chr3L_11_12465001 chr3L_12465001 RAL-223 2067 chr3L 12476249 12476317 chr3L 12476366 12476443 22 126 8.0 11.0 9.5 2.1 194 chr3L 12476249 intron CG10663 - chr3L 12476346 intron CG10663 - chr3L 12476443 intron CG10663 - chr3L_22_12475001 chr3L_12475001 RAL-223 2068 chr3L 12491674 12491708 chr3L 12491807 12491841 6 133 0.0 12.0 6.0 0.9 167 chr3L 12491674 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491758 intergenic CG10657 -,CR45682 + chr3L 12491841 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_6_12490001 chr3L_12490001 RAL-223 2069 chr3L 12578011 12578055 chr3L 12578149 12578193 8 138 9.0 0.0 4.5 1.5 182 chr3L 12578011 intergenic not near genes chr3L 12578102 intergenic not near genes chr3L 12578193 intergenic not near genes chr3L_8_12575001 chr3L_12575001 RAL-223 2070 chr3L 12610955 12611019 chr3L 12611251 12611315 15 296 0.0 5.5 2.8 3.9 360 chr3L 12610955 intron caup + chr3L 12611135 intron caup + chr3L 12611315 intron caup + chr3L_15_12610001 chr3L_12610001 RAL-223 2071 chr3L 12626105 12626156 chr3L 12626264 12626315 24 159 11.0 5.5 8.2 2.6 210 chr3L 12626105 intergenic not near genes chr3L 12626210 intergenic not near genes chr3L 12626315 intergenic not near genes chr3L_24_12625001 chr3L_12625001 RAL-223 2072 chr3L 12647899 12647965 chr3L 12648025 12648091 14 126 6.5 0.5 3.5 3.1 192 chr3L 12647899 5` UTR CR32111 + chr3L 12647995 5` UTR CR32111 + chr3L 12648091 5` UTR CR32111 + chr3L_14_12645001 chr3L_12645001 RAL-223 2073 chr3L 12656254 12656319 chr3L 12656391 12656456 23 134 10.0 8.0 9.0 2.3 202 chr3L 12656254 intergenic not near genes chr3L 12656355 intergenic not near genes chr3L 12656456 intergenic not near genes chr3L_23_12655001 chr3L_12655001 RAL-223 2074 chr3L 12668018 12668087 chr3L 12668154 12668222 9 135 0.0 7.5 3.8 1.9 204 chr3L 12668018 intergenic not near genes chr3L 12668120 intergenic not near genes chr3L 12668222 intergenic not near genes chr3L_9_12665001 chr3L_12665001 RAL-223 2075 chr3L 12699721 12699800 chr3L 12699952 12700030 33 231 3.0 5.5 4.2 6.3 309 chr3L 12699721 intron mirr + chr3L 12699876 intron mirr + chr3L 12700030 intron mirr + chr3L_33_12695001 chr3L_12695001 RAL-223 2076 chr3L 12722246 12722312 chr3L 12722378 12722444 21 132 6.0 5.0 5.5 3.2 198 chr3L 12722246 intergenic not near genes chr3L 12722345 intergenic not near genes chr3L 12722444 intergenic not near genes chr3L_21_12720001 chr3L_12720001 RAL-223 2077 chr3L 12727985 12728019 chr3L 12728119 12728153 14 134 13.5 11.5 12.5 1.0 168 chr3L 12727985 intergenic not near genes chr3L 12728069 intergenic not near genes chr3L 12728153 intergenic not near genes chr3L_14_12725001 chr3L_12725001 RAL-223 2078 chr3L 12874889 12874949 chr3L 12877231 12877291 jockey 22 2342 7.5 10.5 9.0 2.2 2402 chr3L 12874889 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877291 intergenic not near genes chr3L_22_12875001 chr3L_12875001 RAL-223 2079 chr3L 12892878 12892908 chr3L 12893034 12893064 11 156 6.0 5.0 5.5 1.7 186 chr3L 12892878 intron CG14118 + chr3L 12892971 intron CG14118 + chr3L 12893064 intron CG14118 + chr3L_11_12890001 chr3L_12890001 RAL-223 2080 chr3L 12894764 12894805 chr3L 12894892 12894929 19 128 14.0 12.0 13.0 1.4 165 chr3L 12894764 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894929 intergenic CG14118 + chr3L_19_12890001 chr3L_12890001 RAL-223 2081 chr3L 12919234 12919255 chr3L 12924757 12924778 Rt1c 6 5522 23.5 7.5 15.5 0.4 5544 chr3L 12919234 intergenic not near genes chr3L 12922006 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-223 2082 chr3L 12919256 12919305 chr3L 12924750 12924832 Rt1c 5 5505 10.0 7.5 8.8 0.5 5576 chr3L 12919256 intergenic not near genes chr3L 12922044 intergenic not near genes chr3L 12924832 intergenic not near genes chr3L_5_12920001 chr3L_12920001 RAL-223 2083 chr3L 12955097 12955139 chr3L 12955223 12955265 6 126 11.0 13.0 12.0 0.5 168 chr3L 12955097 intergenic CG10752 - chr3L 12955181 intergenic not near genes chr3L 12955265 intergenic not near genes chr3L_6_12955001 chr3L_12955001 RAL-223 2084 chr3L 12957742 12957818 chr3L 12962274 12962283 copia 32 4529 9.5 9.0 9.2 3.1 4541 chr3L 12957742 intergenic not near genes chr3L 12960012 intergenic not near genes chr3L 12962283 intergenic not near genes chr3L_32_12960001 chr3L_12960001 RAL-223 2085 chr3L 13008747 13008772 chr3L 13008955 13008981 8 209 13.0 9.5 11.2 0.7 234 chr3L 13008747 exon CG14117 + chr3L 13008864 exon CG14117 + chr3L 13008981 exon CG14117 + chr3L_8_13005001 chr3L_13005001 RAL-223 2086 chr3L 13008775 13008817 chr3L 13008954 13009026 10 204 7.5 9.0 8.2 1.1 251 chr3L 13008775 exon CG14117 + chr3L 13008900 intron CG14117 + chr3L 13009026 exon CG14117 + chr3L_10_13005001 chr3L_13005001 RAL-223 2087 chr3L 13017869 13017912 chr3L 13018001 13018044 12 132 7.5 11.5 9.5 1.1 175 chr3L 13017869 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017956 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018044 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_12_13015001 chr3L_13015001 RAL-223 2088 chr3L 13056420 13056718 chr3L 13056627 13056853 15 138 0.0 0.0 0.0 15.0 433 chr3L 13056420 intergenic not near genes chr3L 13056636 intergenic not near genes chr3L 13056853 intergenic not near genes chr3L_15_13055001 chr3L_13055001 RAL-223 2089 chr3L 13069508 13069583 chr3L 13069637 13069712 23 129 7.0 10.0 8.5 2.4 204 chr3L 13069508 intergenic not near genes chr3L 13069610 intergenic not near genes chr3L 13069712 intergenic not near genes chr3L_23_13065001 chr3L_13065001 RAL-223 2090 chr3L 13085012 13085079 chr3L 13085141 13085208 20 128 7.5 8.5 8.0 2.2 196 chr3L 13085012 intergenic not near genes chr3L 13085110 intergenic not near genes chr3L 13085208 intergenic not near genes chr3L_20_13085001 chr3L_13085001 RAL-223 2091 chr3L 13174214 13174272 chr3L 13174356 13174414 21 142 11.5 6.5 9.0 2.1 200 chr3L 13174214 intergenic snky + chr3L 13174314 intergenic snky + chr3L 13174414 intergenic snky + chr3L_21_13170001 chr3L_13170001 RAL-223 2092 chr3L 13206185 13206264 chr3L 13206317 13206396 45 132 5.5 10.5 8.0 5.0 211 chr3L 13206185 intergenic not near genes chr3L 13206290 intergenic not near genes chr3L 13206396 intergenic not near genes chr3L_45_13205001 chr3L_13205001 RAL-223 2093 chr3L 13218857 13218927 chr3L 13218991 13219061 29 133 5.5 6.0 5.8 4.3 204 chr3L 13218857 3` UTR CR45098 - chr3L 13218959 intergenic CR45098 - chr3L 13219061 intergenic CR45098 - chr3L_29_13215001 chr3L_13215001 RAL-223 2094 chr3L 13223164 13223237 chr3L 13223291 13223364 23 127 5.0 10.0 7.5 2.7 200 chr3L 13223164 intergenic not near genes chr3L 13223264 intergenic not near genes chr3L 13223364 intergenic not near genes chr3L_23_13220001 chr3L_13220001 RAL-223 2095 chr3L 13262539 13262547 chr3L 13262665 13262673 4 126 0.0 18.0 9.0 0.4 134 chr3L 13262539 intron caps + chr3L 13262606 intron caps + chr3L 13262673 intron caps + chr3L_4_13260001 chr3L_13260001 RAL-223 2096 chr3L 13267240 13267299 chr3L 13267403 13267457 22 162 10.5 6.5 8.5 2.3 217 chr3L 13267240 intron caps + chr3L 13267348 intron caps + chr3L 13267457 intron caps + chr3L_22_13265001 chr3L_13265001 RAL-223 2097 chr3L 13294501 13294572 chr3L 13294672 13294743 33 171 5.0 6.0 5.5 5.1 242 chr3L 13294501 intergenic not near genes chr3L 13294622 intergenic not near genes chr3L 13294743 intergenic not near genes chr3L_33_13290001 chr3L_13290001 RAL-223 2098 chr3L 13296477 13296546 chr3L 13296618 13296687 23 141 7.0 8.5 7.8 2.6 210 chr3L 13296477 intergenic Sfp70A4 - chr3L 13296582 3` UTR Sfp70A4 - chr3L 13296687 3` UTR Sfp70A4 - chr3L_23_13295001 chr3L_13295001 RAL-223 2099 chr3L 13299344 13299424 chr3L 13299485 13299565 13 141 5.5 0.5 3.0 3.2 221 chr3L 13299344 intergenic CG42481 -,CG43147 - chr3L 13299454 intergenic CG43147 -,CG42481 - chr3L 13299565 intergenic CG43147 - chr3L_13_13295001 chr3L_13295001 RAL-223 2100 chr3L 13315807 13315858 chr3L 13315944 13315995 14 137 6.0 2.5 4.2 2.7 188 chr3L 13315807 intergenic not near genes chr3L 13315901 intergenic not near genes chr3L 13315995 intergenic not near genes chr3L_14_13315001 chr3L_13315001 RAL-223 2101 chr3L 13337129 13337152 chr3L 13337270 13337293 10 141 4.0 10.0 7.0 1.2 164 chr3L 13337129 intergenic not near genes chr3L 13337211 intergenic not near genes chr3L 13337293 intergenic not near genes chr3L_10_13335001 chr3L_13335001 RAL-223 2102 chr3L 13400480 13400545 chr3L 13400606 13400671 10 126 3.5 7.5 5.5 1.5 191 chr3L 13400480 intron sens - chr3L 13400576 intron sens - chr3L 13400671 intron sens - chr3L_10_13400001 chr3L_13400001 RAL-223 2103 chr3L 13477001 13477036 chr3L 13477128 13477163 11 127 0.0 15.0 7.5 1.3 162 chr3L 13477001 intergenic not near genes chr3L 13477082 intergenic stv + chr3L 13477163 intergenic stv + chr3L_11_13475001 chr3L_13475001 RAL-223 2104 chr3L 13525113 13525181 chr3L 13532959 13533027 roo 28 7845 11.5 5.5 8.5 2.9 7914 chr3L 13525113 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13533027 intergenic not near genes chr3L_28_13525001 chr3L_13525001 RAL-223 2105 chr3L 13574578 13574620 chr3L 13580138 13580181 Rt1c 7 5560 7.0 9.5 8.2 0.8 5603 chr3L 13574578 intron bru-3 - chr3L 13577380 intron bru-3 - chr3L 13580181 intron bru-3 - chr3L_7_13575001 chr3L_13575001 RAL-223 2106 chr3L 13595999 13596047 chr3L 13596164 13596202 13 160 10.5 3.5 7.0 1.6 203 chr3L 13595999 intron bru-3 - chr3L 13596100 intron bru-3 - chr3L 13596202 intron bru-3 - chr3L_13_13595001 chr3L_13595001 RAL-223 2107 chr3L 13626640 13626713 chr3L 13626774 13626847 30 134 5.5 6.5 6.0 4.3 207 chr3L 13626640 intron bru-3 - chr3L 13626744 intron bru-3 - chr3L 13626847 intron bru-3 - chr3L_30_13625001 chr3L_13625001 RAL-223 2108 chr3L 13629477 13629541 chr3L 13629638 13629702 18 161 6.0 9.5 7.8 2.0 225 chr3L 13629477 intron bru-3 - chr3L 13629590 intron bru-3 - chr3L 13629702 intron bru-3 - chr3L_18_13625001 chr3L_13625001 RAL-223 2109 chr3L 13648844 13648913 chr3L 13648984 13649053 23 139 6.0 7.5 6.8 2.9 209 chr3L 13648844 intron bru-3 - chr3L 13648948 intron bru-3 - chr3L 13649053 intron bru-3 - chr3L_23_13645001 chr3L_13645001 RAL-223 2110 chr3L 13677482 13677557 chr3L 13677609 13677684 14 127 6.0 5.0 5.5 2.2 202 chr3L 13677482 intron bru-3 - chr3L 13677583 intron bru-3 - chr3L 13677684 intron bru-3 - chr3L_14_13675001 chr3L_13675001 RAL-223 2111 chr3L 13726743 13726767 chr3L 13726914 13726938 11 171 11.0 9.0 10.0 1.0 195 chr3L 13726743 intron bru-3 - chr3L 13726840 intron bru-3 - chr3L 13726938 intron bru-3 - chr3L_11_13725001 chr3L_13725001 RAL-223 2112 chr3L 13774603 13774664 chr3L 13774728 13774800 20 132 4.0 5.5 4.8 3.4 197 chr3L 13774603 intron bru-3 - chr3L 13774702 intron bru-3 - chr3L 13774800 intron bru-3 - chr3L_20_13770001 chr3L_13770001 RAL-223 2113 chr3L 13796231 13796235 chr3L 13796363 13796367 4 132 15.0 0.0 7.5 0.5 136 chr3L 13796231 intron bru-3 - chr3L 13796299 intron bru-3 - chr3L 13796367 intron bru-3 - chr3L_4_13795001 chr3L_13795001 RAL-223 2114 chr3L 13804504 13804565 chr3L 13822840 13822901 roo 18 18336 4.0 7.0 5.5 2.8 18397 chr3L 13804504 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822901 intergenic not near genes chr3L_18_13810001 chr3L_13810001 RAL-223 2115 chr3L 13833927 13833998 chr3L 13834087 13834162 17 161 9.5 7.0 8.2 1.8 235 chr3L 13833927 intergenic not near genes chr3L 13834044 intergenic not near genes chr3L 13834162 intergenic not near genes chr3L_17_13830001 chr3L_13830001 RAL-223 2116 chr3L 13838884 13838959 chr3L 13839153 13839228 24 268 6.5 6.5 6.5 3.2 344 chr3L 13838884 intergenic not near genes chr3L 13839056 intergenic not near genes chr3L 13839228 intergenic not near genes chr3L_24_13835001 chr3L_13835001 RAL-223 2117 chr3L 13884336 13884386 chr3L 13884477 13884527 17 141 9.0 3.0 6.0 2.4 191 chr3L 13884336 intron dysc - chr3L 13884432 intron dysc - chr3L 13884527 intron dysc - chr3L_17_13880001 chr3L_13880001 RAL-223 2118 chr3L 13920369 13920434 chr3L 13920499 13920564 31 129 5.5 8.0 6.8 4.0 195 chr3L 13920369 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920564 intron Rgl - chr3L_31_13920001 chr3L_13920001 RAL-223 2119 chr3L 13931292 13931368 chr3L 13931447 13931523 17 155 8.0 6.0 7.0 2.1 231 chr3L 13931292 intron Gl + chr3L 13931408 intron Gl + chr3L 13931523 intron Gl + chr3L_17_13930001 chr3L_13930001 RAL-223 2120 chr3L 13941578 13941638 chr3L 13941722 13941782 21 144 7.0 5.5 6.2 2.9 204 chr3L 13941578 intron CG32137 + chr3L 13941680 intron CG32137 + chr3L 13941782 intron CG32137 + chr3L_21_13940001 chr3L_13940001 RAL-223 2121 chr3L 13957836 13957903 chr3L 13958079 13958146 30 240 6.0 9.5 7.8 3.4 310 chr3L 13957836 intron CG32137 + chr3L 13957991 intron CG32137 + chr3L 13958146 intron CG32137 + chr3L_30_13955001 chr3L_13955001 RAL-223 2122 chr3L 13993966 13994015 chr3L 13994096 13994146 13 131 6.5 9.5 8.0 1.4 180 chr3L 13993966 intergenic 26-29-p + chr3L 13994056 intergenic 26-29-p + chr3L 13994146 intergenic 26-29-p + chr3L_13_13990001 chr3L_13990001 RAL-223 2123 chr3L 14031240 14031308 chr3L 14031371 14031427 23 125 16.5 8.0 12.2 1.7 187 chr3L 14031240 intron endos - chr3L 14031334 intron endos - chr3L 14031427 5` UTR endos - chr3L_23_14030001 chr3L_14030001 RAL-223 2124 chr3L 14061648 14061687 chr3L 14061755 14061823 21 134 5.5 5.0 5.2 3.4 175 chr3L 14061648 intron CG32138 + chr3L 14061736 intron CG32138 + chr3L 14061823 intron CG32138 + chr3L_21_14060001 chr3L_14060001 RAL-223 2125 chr3L 14108549 14108606 chr3L 14108666 14108734 16 127 7.5 5.0 6.2 2.2 185 chr3L 14108549 intergenic Sox21a - chr3L 14108642 intergenic not near genes chr3L 14108734 intergenic not near genes chr3L_16_14105001 chr3L_14105001 RAL-223 2126 chr3L 14143205 14143223 chr3L 14143352 14143370 11 147 0.0 13.5 6.8 1.4 165 chr3L 14143205 intergenic not near genes chr3L 14143288 intergenic not near genes chr3L 14143370 intergenic not near genes chr3L_11_14140001 chr3L_14140001 RAL-223 2127 chr3L 14168294 14168314 chr3L 14168425 14168445 10 131 3.5 0.0 1.8 3.6 151 chr3L 14168294 intergenic not near genes chr3L 14168370 intergenic not near genes chr3L 14168445 intergenic not near genes chr3L_10_14165001 chr3L_14165001 RAL-223 2128 chr3L 14174066 14174089 chr3L 14174192 14174215 9 126 12.0 7.5 9.8 0.8 149 chr3L 14174066 intergenic not near genes chr3L 14174140 intergenic not near genes chr3L 14174215 intergenic not near genes chr3L_9_14170001 chr3L_14170001 RAL-223 2129 chr3L 14194675 14194734 chr3L 14194801 14194860 22 126 4.5 0.0 2.2 6.9 185 chr3L 14194675 intron nuf + chr3L 14194768 intron nuf + chr3L 14194860 intron nuf + chr3L_22_14190001 chr3L_14190001 RAL-223 2130 chr3L 14214797 14214871 chr3L 14214923 14215006 28 128 1.5 5.0 3.2 6.7 209 chr3L 14214797 intron nuf + chr3L 14214902 intron nuf + chr3L 14215006 intron nuf + chr3L_28_14210001 chr3L_14210001 RAL-223 2131 chr3L 14236003 14236046 chr3L 14236190 14236216 12 185 6.0 5.5 5.8 1.8 213 chr3L 14236003 intergenic CG34244 - chr3L 14236110 intergenic CG34244 - chr3L 14236216 intergenic CG34244 -,CG7906 + chr3L_12_14235001 chr3L_14235001 RAL-223 2132 chr3L 14245530 14245594 chr3L 14245674 14245738 1360 22 143 8.5 11.0 9.8 2.0 208 chr3L 14245530 3` UTR CR44561 - chr3L 14245634 3` UTR CR44561 - chr3L 14245738 intergenic CR44561 -,CR44560 + chr3L_22_14245001 chr3L_14245001 RAL-223 2133 chr3L 14267360 14267406 chr3L 14271822 14271868 F-element 15 4462 7.5 0.0 3.8 3.1 4508 chr3L 14267360 intergenic not near genes chr3L 14269614 intergenic not near genes chr3L 14271868 intergenic not near genes chr3L_15_14265001 chr3L_14265001 RAL-223 2134 chr3L 14282537 14282607 chr3L 14282667 14282737 20 130 8.0 5.0 6.5 2.7 200 chr3L 14282537 intron fz + chr3L 14282637 intron fz + chr3L 14282737 intron fz + chr3L_20_14280001 chr3L_14280001 RAL-223 2135 chr3L 14295933 14296003 chr3L 14296469 14296539 roo 23 534 5.5 8.0 6.8 2.9 606 chr3L 14295933 intron fz + chr3L 14296236 intron fz + chr3L 14296539 intron fz + chr3L_23_14295001 chr3L_14295001 RAL-223 2136 chr3L 14312015 14312042 chr3L 14316842 14316906 X-element 9 4854 5.5 7.0 6.2 1.2 4891 chr3L 14312015 exon fz + chr3L 14314460 intron fz + chr3L 14316906 intron fz + chr3L_9_14310001 chr3L_14310001 RAL-223 2137 chr3L 14326921 14326971 chr3L 14327107 14327157 18 185 10.0 9.5 9.8 1.7 236 chr3L 14326921 intron fz + chr3L 14327039 intron fz + chr3L 14327157 intron fz + chr3L_18_14325001 chr3L_14325001 RAL-223 2138 chr3L 14326976 14326990 chr3L 14327097 14327176 7 177 6.0 8.0 7.0 0.9 200 chr3L 14326976 intron fz + chr3L 14327076 intron fz + chr3L 14327176 intron fz + chr3L_7_14325001 chr3L_14325001 RAL-223 2139 chr3L 14341398 14341439 chr3L 14341568 14341624 12 184 0.0 9.5 4.8 2.1 226 chr3L 14341398 intron fz + chr3L 14341511 intron fz + chr3L 14341624 intron fz + chr3L_12_14340001 chr3L_14340001 RAL-223 2140 chr3L 14356474 14356551 chr3L 14356604 14356646 42 129 10.0 7.0 8.5 4.4 172 chr3L 14356474 intron fz + chr3L 14356560 intron fz + chr3L 14356646 intron fz + chr3L_42_14355001 chr3L_14355001 RAL-223 2141 chr3L 14359951 14360027 chr3L 14360214 14360274 26 260 8.5 7.0 7.8 3.0 323 chr3L 14359951 intron fz + chr3L 14360112 intron fz + chr3L 14360274 intron fz + chr3L_26_14360001 chr3L_14360001 RAL-223 2142 chr3L 14392155 14392183 chr3L 14392287 14392315 11 132 8.0 0.0 4.0 2.2 160 chr3L 14392155 intergenic not near genes chr3L 14392235 intergenic not near genes chr3L 14392315 intergenic not near genes chr3L_11_14390001 chr3L_14390001 RAL-223 2143 chr3L 14399130 14399149 chr3L 14399269 14399276 5 137 20.5 0.0 10.2 0.4 146 chr3L 14399130 intergenic not near genes chr3L 14399203 intergenic not near genes chr3L 14399276 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-223 2144 chr3L 14444675 14444741 chr3L 14444895 14444966 39 225 10.5 9.0 9.8 3.6 291 chr3L 14444675 intron bbg - chr3L 14444820 intron bbg - chr3L 14444966 intron bbg - chr3L_39_14440001 chr3L_14440001 RAL-223 2145 chr3L 14455229 14455301 chr3L 14457156 14457218 28 1926 10.0 10.5 10.2 2.5 1989 chr3L 14455229 intron bbg - chr3L 14456224 intron bbg - chr3L 14457218 intron bbg - chr3L_28_14455001 chr3L_14455001 RAL-223 2146 chr3L 14468406 14468455 chr3L 14473662 14473711 copia 16 5256 7.0 4.0 5.5 2.5 5305 chr3L 14468406 intron bbg - chr3L 14471058 intron bbg - chr3L 14473711 intron bbg - chr3L_16_14470001 chr3L_14470001 RAL-223 2147 chr3L 14543591 14543659 chr3L 14543786 14543854 20 195 3.5 8.5 6.0 2.9 263 chr3L 14543591 intron CG9238 - chr3L 14543722 intron CG9238 - chr3L 14543854 intron CG9238 - chr3L_20_14540001 chr3L_14540001 RAL-223 2148 chr3L 14546565 14546818 chr3L 14546696 14546949 38 131 3.5 4.5 4.0 7.6 384 chr3L 14546565 intron CG9238 - chr3L 14546757 intron CG9238 - chr3L 14546949 intron CG9238 - chr3L_38_14545001 chr3L_14545001 RAL-223 2149 chr3L 14549518 14549583 chr3L 14549662 14549727 20 144 6.5 4.5 5.5 3.1 209 chr3L 14549518 intron CG9238 - chr3L 14549622 intron CG9238 - chr3L 14549727 intron CG9238 - chr3L_20_14545001 chr3L_14545001 RAL-223 2150 chr3L 14565701 14565766 chr3L 14565841 14565906 22 141 11.5 0.0 5.8 3.2 205 chr3L 14565701 intergenic not near genes chr3L 14565804 intergenic not near genes chr3L 14565906 intergenic not near genes chr3L_22_14565001 chr3L_14565001 RAL-223 2151 chr3L 14596174 14596202 chr3L 14596320 14596348 9 146 10.0 5.5 7.8 1.0 174 chr3L 14596174 intron HGTX - chr3L 14596261 intron HGTX - chr3L 14596348 intron HGTX - chr3L_9_14595001 chr3L_14595001 RAL-223 2152 chr3L 14608040 14608094 chr3L 14608168 14608222 18 128 9.5 9.0 9.2 1.8 182 chr3L 14608040 intergenic not near genes chr3L 14608131 intergenic not near genes chr3L 14608222 intergenic not near genes chr3L_18_14605001 chr3L_14605001 RAL-223 2153 chr3L 14618353 14618425 chr3L 14618618 14618690 28 263 6.5 7.5 7.0 3.5 337 chr3L 14618353 intron shd + chr3L 14618522 intron shd + chr3L 14618690 intron shd + chr3L_28_14615001 chr3L_14615001 RAL-223 2154 chr3L 14627187 14627218 chr3L 14627324 14627355 13 136 5.0 9.0 7.0 1.6 168 chr3L 14627187 intron CG9628 + chr3L 14627271 intron CG9628 + chr3L 14627355 exon CG9628 + chr3L_13_14625001 chr3L_14625001 RAL-223 2155 chr3L 14633741 14633817 chr3L 14633887 14633963 19 146 7.0 5.5 6.2 2.6 222 chr3L 14633741 intron dlp + chr3L 14633852 intron dlp + chr3L 14633963 intron dlp + chr3L_19_14630001 chr3L_14630001 RAL-223 2156 chr3L 14702004 14702016 chr3L 14702133 14702145 4 128 4.0 16.0 10.0 0.4 141 chr3L 14702004 intron ome + chr3L 14702074 intron ome + chr3L 14702145 intron ome + chr3L_4_14700001 chr3L_14700001 RAL-223 2157 chr3L 14721139 14721209 chr3L 14723032 14723044 Rt1c 16 1886 6.5 6.5 6.5 2.1 1905 chr3L 14721139 intron ome + chr3L 14722092 intron ome + chr3L 14723044 intron ome + chr3L_16_14720001 chr3L_14720001 RAL-223 2158 chr3L 14725552 14725631 chr3L 14728605 14728683 Doc 15 3053 1.5 5.0 3.2 3.6 3131 chr3L 14725552 intron ome + chr3L 14727118 intron ome + chr3L 14728683 intron ome + chr3L_15_14725001 chr3L_14725001 RAL-223 2159 chr3L 14825115 14825152 chr3L 14832892 14832919 Stalker2 17 7776 2.5 17.5 10.0 1.5 7804 chr3L 14825115 intron CG17839 + chr3L 14829017 intron CG17839 + chr3L 14832919 intron CG17839 + chr3L_17_14825001 chr3L_14825001 RAL-223 2160 chr3L 14840309 14840383 chr3L 14840464 14840538 20 154 0.0 11.0 5.5 3.1 229 chr3L 14840309 intron CG17839 + chr3L 14840424 intron CG17839 + chr3L 14840538 intron CG17839 + chr3L_20_14840001 chr3L_14840001 RAL-223 2161 chr3L 14870040 14870067 chr3L 14870166 14870193 8 126 8.0 11.0 9.5 0.8 153 chr3L 14870040 intron CG17839 + chr3L 14870116 intron CG17839 + chr3L 14870193 intron CG17839 + chr3L_8_14870001 chr3L_14870001 RAL-223 2162 chr3L 14893610 14893680 chr3L 14893745 14893815 32 134 11.5 6.5 9.0 3.2 205 chr3L 14893610 intergenic CG34245 - chr3L 14893712 intergenic CG34245 - chr3L 14893815 exon CG34245 - chr3L_32_14890001 chr3L_14890001 RAL-223 2163 chr3L 14913860 14913880 chr3L 14913987 14914007 6 127 12.5 10.5 11.5 0.5 147 chr3L 14913860 intron DCX-EMAP + chr3L 14913934 intron DCX-EMAP + chr3L 14914007 intron DCX-EMAP + chr3L_6_14910001 chr3L_14910001 RAL-223 2164 chr3L 14913882 14913921 chr3L 14913979 14914048 21 126 7.0 9.5 8.2 2.3 166 chr3L 14913882 intron DCX-EMAP + chr3L 14913965 intron DCX-EMAP + chr3L 14914048 intron DCX-EMAP + chr3L_21_14910001 chr3L_14910001 RAL-223 2165 chr3L 14933395 14933453 chr3L 14933527 14933585 22 131 8.5 9.5 9.0 2.2 190 chr3L 14933395 intron DCX-EMAP + chr3L 14933490 intron DCX-EMAP + chr3L 14933585 intron DCX-EMAP + chr3L_22_14930001 chr3L_14930001 RAL-223 2166 chr3L 14957445 14957637 chr3L 14957584 14957802 7 161 0.0 0.0 0.0 7.0 357 chr3L 14957445 intergenic not near genes chr3L 14957624 intergenic not near genes chr3L 14957802 intergenic not near genes chr3L_7_14955001 chr3L_14955001 RAL-223 2167 chr3L 14957941 14957953 chr3L 14958090 14958102 5 149 7.0 0.0 3.5 1.1 161 chr3L 14957941 intergenic not near genes chr3L 14958022 intergenic not near genes chr3L 14958102 intergenic not near genes chr3L_5_14955001 chr3L_14955001 RAL-223 2168 chr3L 14970720 14970765 chr3L 14971080 14971125 F-element 11 360 6.5 8.0 7.2 1.3 405 chr3L 14970720 intergenic Tom + chr3L 14970922 intergenic not near genes chr3L 14971125 intergenic not near genes chr3L_11_14970001 chr3L_14970001 RAL-223 2169 chr3L 14973585 14973645 chr3L 14973715 14973775 30 130 10.5 8.0 9.2 2.9 190 chr3L 14973585 intergenic Brd + chr3L 14973680 intergenic Brd + chr3L 14973775 intergenic not near genes chr3L_30_14970001 chr3L_14970001 RAL-223 2170 chr3L 15085003 15085074 chr3L 15086219 15086290 1360 24 1216 7.0 7.5 7.2 2.9 1287 chr3L 15085003 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086290 intron cp309 - chr3L_24_15085001 chr3L_15085001 RAL-223 2171 chr3L 15087003 15087027 chr3L 15087129 15087153 11 126 12.0 8.5 10.2 1.0 150 chr3L 15087003 intron cp309 - chr3L 15087078 intron cp309 - chr3L 15087153 intron cp309 - chr3L_11_15085001 chr3L_15085001 RAL-223 2172 chr3L 15094921 15094961 chr3L 15095067 15095107 19 146 8.5 10.0 9.2 1.9 186 chr3L 15094921 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15095014 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095107 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_19_15095001 chr3L_15095001 RAL-223 2173 chr3L 15166926 15166994 chr3L 15167058 15167132 26 137 7.5 6.0 6.8 3.3 206 chr3L 15166926 intergenic not near genes chr3L 15167029 intergenic not near genes chr3L 15167132 intergenic not near genes chr3L_26_15165001 chr3L_15165001 RAL-223 2174 chr3L 15170753 15170829 chr3L 15170952 15171020 15 190 5.0 3.0 4.0 3.0 267 chr3L 15170753 intergenic not near genes chr3L 15170886 intergenic not near genes chr3L 15171020 intergenic not near genes chr3L_15_15170001 chr3L_15170001 RAL-223 2175 chr3L 15196817 15196880 chr3L 15196948 15197011 22 131 4.5 7.5 6.0 3.1 194 chr3L 15196817 intergenic not near genes chr3L 15196914 intergenic not near genes chr3L 15197011 intergenic not near genes chr3L_22_15195001 chr3L_15195001 RAL-223 2176 chr3L 15248153 15248227 chr3L 15248291 15248365 30 136 5.0 9.0 7.0 3.8 212 chr3L 15248153 intergenic not near genes chr3L 15248259 intergenic not near genes chr3L 15248365 intergenic not near genes chr3L_30_15245001 chr3L_15245001 RAL-223 2177 chr3L 15248976 15248982 chr3L 15249103 15249109 6 127 17.0 18.5 17.8 0.3 133 chr3L 15248976 intergenic not near genes chr3L 15249042 intergenic not near genes chr3L 15249109 intergenic not near genes chr3L_6_15245001 chr3L_15245001 RAL-223 2178 chr3L 15257390 15257444 chr3L 15257653 15257707 18 263 4.5 5.5 5.0 3.0 317 chr3L 15257390 intergenic not near genes chr3L 15257548 intergenic not near genes chr3L 15257707 intergenic not near genes chr3L_18_15255001 chr3L_15255001 RAL-223 2179 chr3L 15264032 15264084 chr3L 15264159 15264213 10 126 0.0 0.0 0.0 10.0 181 chr3L 15264032 intergenic not near genes chr3L 15264122 intergenic not near genes chr3L 15264213 intergenic not near genes chr3L_10_15260001 chr3L_15260001 RAL-223 2180 chr3L 15273285 15273355 chr3L 15273481 15273541 16 195 7.0 3.5 5.2 2.6 256 chr3L 15273285 intergenic not near genes chr3L 15273413 intergenic not near genes chr3L 15273541 intergenic not near genes chr3L_16_15270001 chr3L_15270001 RAL-223 2181 chr3L 15295727 15295791 chr3L 15298620 15298684 gypsy5 32 2893 9.0 8.5 8.8 3.3 2957 chr3L 15295727 intergenic not near genes chr3L 15297206 intergenic not near genes chr3L 15298684 intergenic Best4 + chr3L_32_15295001 chr3L_15295001 RAL-223 2182 chr3L 15417990 15418065 chr3L 15418124 15418199 22 134 7.0 8.0 7.5 2.6 209 chr3L 15417990 intergenic not near genes chr3L 15418094 intergenic not near genes chr3L 15418199 intergenic not near genes chr3L_22_15415001 chr3L_15415001 RAL-223 2183 chr3L 15423718 15423782 chr3L 15426612 15426676 opus 21 2893 7.5 6.0 6.8 2.7 2958 chr3L 15423718 intergenic not near genes chr3L 15425197 intergenic not near genes chr3L 15426676 intergenic not near genes chr3L_21_15425001 chr3L_15425001 RAL-223 2184 chr3L 15444612 15444615 chr3L 15444756 15444759 6 144 23.0 11.0 17.0 0.3 147 chr3L 15444612 intergenic not near genes chr3L 15444686 intergenic not near genes chr3L 15444759 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-223 2185 chr3L 15444620 15444659 chr3L 15444752 15444803 18 142 15.0 10.5 12.8 1.3 183 chr3L 15444620 intergenic not near genes chr3L 15444712 intergenic not near genes chr3L 15444803 intergenic not near genes chr3L_18_15440001 chr3L_15440001 RAL-223 2186 chr3L 15444660 15444681 chr3L 15444748 15444825 13 137 11.5 9.5 10.5 1.1 165 chr3L 15444660 intergenic not near genes chr3L 15444742 intergenic not near genes chr3L 15444825 intergenic not near genes chr3L_13_15440001 chr3L_15440001 RAL-223 2187 chr3L 15446232 15446288 chr3L 15446395 15446451 4 163 27.0 25.5 26.2 0.1 219 chr3L 15446232 intergenic not near genes chr3L 15446342 intergenic not near genes chr3L 15446451 intergenic not near genes chr3L_4_15445001 chr3L_15445001 RAL-223 2188 chr3L 15450290 15450298 chr3L 15450428 15450436 4 138 19.5 0.0 9.8 0.4 146 chr3L 15450290 intergenic not near genes chr3L 15450363 intergenic not near genes chr3L 15450436 intergenic not near genes chr3L_4_15450001 chr3L_15450001 RAL-223 2189 chr3L 15457156 15457289 chr3L 15457286 15457430 4 130 0.0 0.0 0.0 4.0 274 chr3L 15457156 intergenic CR45395 + chr3L 15457293 intergenic CR45395 + chr3L 15457430 intergenic CR45395 + chr3L_4_15455001 chr3L_15455001 RAL-223 2190 chr3L 15465987 15466139 chr3L 15466119 15466285 19 143 0.0 0.0 0.0 19.0 298 chr3L 15465987 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466285 intergenic not near genes chr3L_19_15465001 chr3L_15465001 RAL-223 2191 chr3L 15482273 15482349 chr3L 15482422 15482461 15 148 5.5 9.0 7.2 1.8 188 chr3L 15482273 intergenic not near genes chr3L 15482367 intergenic not near genes chr3L 15482461 intergenic not near genes chr3L_15_15480001 chr3L_15480001 RAL-223 2192 chr3L 15489024 15489088 chr3L 15489354 15489418 26 330 10.5 5.5 8.0 2.9 394 chr3L 15489024 intergenic not near genes chr3L 15489221 intergenic not near genes chr3L 15489418 intergenic not near genes chr3L_26_15485001 chr3L_15485001 RAL-223 2193 chr3L 15493265 15493346 chr3L 15493410 15493491 13 145 4.5 0.0 2.2 4.1 226 chr3L 15493265 exon CG12355 - chr3L 15493378 intron CG12355 - chr3L 15493491 5` UTR CG12355 - chr3L_13_15490001 chr3L_15490001 RAL-223 2194 chr3L 15600120 15600197 chr3L 15600255 15600348 22 149 7.0 0.0 3.5 4.9 228 chr3L 15600120 intron RhoGAP71E + chr3L 15600234 intron RhoGAP71E + chr3L 15600348 intron RhoGAP71E + chr3L_22_15600001 chr3L_15600001 RAL-223 2195 chr3L 15641733 15641811 chr3L 15641868 15641946 6 133 0.0 4.0 2.0 2.0 213 chr3L 15641733 intron comm3 - chr3L 15641840 intron comm3 - chr3L 15641946 intron comm3 - chr3L_6_15640001 chr3L_15640001 RAL-223 2196 chr3L 15658637 15658657 chr3L 15658773 15658793 6 136 3.5 9.0 6.2 0.8 156 chr3L 15658637 intergenic Eig71Eh -,Eig71Eg + chr3L 15658715 intergenic Eig71Eh - chr3L 15658793 intergenic Eig71Eh - chr3L_6_15655001 chr3L_15655001 RAL-223 2197 chr3L 15659477 15659547 chr3L 15659610 15659680 24 133 3.5 9.0 6.2 3.3 203 chr3L 15659477 intergenic Eig71Eh -,Eig71Ei + chr3L 15659578 intergenic Eig71Ei +,Eig71Eh - chr3L 15659680 intergenic Eig71Ei +,Eig71Eh - chr3L_24_15655001 chr3L_15655001 RAL-223 2198 chr3L 15691388 15691442 chr3L 15691520 15691574 24 131 0.5 14.5 7.5 2.8 186 chr3L 15691388 intron CG34451 - chr3L 15691481 intron CG34451 - chr3L 15691574 intron CG34451 - chr3L_24_15690001 chr3L_15690001 RAL-223 2199 chr3L 15791697 15791767 chr3L 15791900 15791970 27 202 6.5 6.5 6.5 3.6 273 chr3L 15791697 intergenic not near genes chr3L 15791834 intergenic not near genes chr3L 15791970 intergenic not near genes chr3L_27_15790001 chr3L_15790001 RAL-223 2200 chr3L 15809126 15809193 chr3L 15809260 15809327 25 134 4.0 11.0 7.5 2.9 201 chr3L 15809126 intergenic CG6244 +,CG13445 + chr3L 15809226 intergenic CG13445 +,CG6244 + chr3L 15809327 intergenic CG13445 +,CG6244 + chr3L_25_15805001 chr3L_15805001 RAL-223 2201 chr3L 15814253 15814307 chr3L 15814384 15814438 5 132 55.0 54.5 54.8 0.1 185 chr3L 15814253 intron fwe - chr3L 15814346 intron fwe - chr3L 15814438 intron fwe - chr3L_5_15810001 chr3L_15810001 RAL-223 2202 chr3L 15833805 15833879 chr3L 15833994 15834068 26 189 46.5 52.5 49.5 0.5 263 chr3L 15833805 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833936 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834068 3` UTR CG18081 - chr3L_26_15830001 chr3L_15830001 RAL-223 2203 chr3L 15840384 15840438 chr3L 15840522 15840575 12 138 5.5 7.5 6.5 1.6 191 chr3L 15840384 intron CG32150 - chr3L 15840480 intron CG32150 - chr3L 15840575 intron CG32150 - chr3L_12_15840001 chr3L_15840001 RAL-223 2204 chr3L 15871542 15871610 chr3L 15871676 15871744 26 134 9.0 10.0 9.5 2.5 202 chr3L 15871542 intron pHCl - chr3L 15871643 intron pHCl - chr3L 15871744 intron pHCl - chr3L_26_15870001 chr3L_15870001 RAL-223 2205 chr3L 15899204 15899240 chr3L 15899801 15899857 jockey 12 613 8.5 6.5 7.5 1.4 653 chr3L 15899204 intergenic pHCl - chr3L 15899530 intergenic not near genes chr3L 15899857 intergenic sff - chr3L_12_15895001 chr3L_15895001 RAL-223 2206 chr3L 15929155 15929220 chr3L 15938348 15938417 roo 8 9194 0.0 11.0 5.5 1.2 9262 chr3L 15929155 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938417 intron Pka-C3 - chr3L_8_15930001 chr3L_15930001 RAL-223 2207 chr3L 15939810 15939880 chr3L 15939936 15940006 8 123 10.5 8.5 9.5 0.8 196 chr3L 15939810 intron Pka-C3 - chr3L 15939908 intron Pka-C3 - chr3L 15940006 intron Pka-C3 - chr3L_8_15935001 chr3L_15935001 RAL-223 2208 chr3L 15981632 15981687 chr3L 15981768 15981824 15 136 9.5 4.5 7.0 1.9 192 chr3L 15981632 intron,3` UTR brm -,CG17027 + chr3L 15981728 intron,3` UTR brm -,CG17027 + chr3L 15981824 intron,3` UTR brm -,CG17027 + chr3L_15_15980001 chr3L_15980001 RAL-223 2209 chr3L 15989187 15989227 chr3L 15989320 15989360 17 133 4.5 7.0 5.8 2.5 173 chr3L 15989187 exon Hip14 + chr3L 15989274 intron Hip14 + chr3L 15989360 intron Hip14 + chr3L_17_15985001 chr3L_15985001 RAL-223 2210 chr3L 16184070 16184133 chr3L 16188939 16189002 X-element 29 4869 6.5 11.0 8.8 3.0 4932 chr3L 16184070 intergenic not near genes chr3L 16186536 intergenic not near genes chr3L 16189002 intergenic not near genes chr3L_29_16185001 chr3L_16185001 RAL-223 2211 chr3L 16216936 16217030 chr3L 16217083 16217147 14 136 0.0 5.0 2.5 4.0 211 chr3L 16216936 intron CG13073 - chr3L 16217042 intron CG13073 - chr3L 16217147 5` UTR CG13073 - chr3L_14_16215001 chr3L_16215001 RAL-223 2212 chr3L 16220459 16220523 chr3L 16220594 16220653 6 134 2.5 0.0 1.2 2.7 194 chr3L 16220459 intergenic not near genes chr3L 16220556 intergenic not near genes chr3L 16220653 intergenic not near genes chr3L_6_16220001 chr3L_16220001 RAL-223 2213 chr3L 16240708 16240778 chr3L 16240890 16240960 13 182 0.0 9.0 4.5 2.4 252 chr3L 16240708 intergenic not near genes chr3L 16240834 intergenic not near genes chr3L 16240960 intergenic not near genes chr3L_13_16240001 chr3L_16240001 RAL-223 2214 chr3L 16279046 16279105 chr3L 16279167 16279236 15 130 7.0 8.5 7.8 1.7 190 chr3L 16279046 exon CG13050 - chr3L 16279141 intron CG13050 - chr3L 16279236 5` UTR CG13050 - chr3L_15_16275001 chr3L_16275001 RAL-223 2215 chr3L 16450001 16450046 chr3L 16450136 16450181 16 135 3.0 8.0 5.5 2.5 180 chr3L 16450001 intron,intron CG33158 +,dsx-c73A - chr3L 16450091 intron,intron CG33158 +,dsx-c73A - chr3L 16450181 intron,exon CG33158 +,dsx-c73A - chr3L_16_16450001 chr3L_16450001 RAL-223 2216 chr3L 16493937 16493999 chr3L 16494504 16494565 jockey 28 566 10.5 17.0 13.8 1.9 628 chr3L 16493937 intron,exon,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494251 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494565 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_28_16490001 chr3L_16490001 RAL-223 2217 chr3L 16503606 16503654 chr3L 16503731 16503781 15 125 5.5 12.5 9.0 1.5 175 chr3L 16503606 intron CG43373 - chr3L 16503694 intron CG43373 - chr3L 16503781 intron CG43373 - chr3L_15_16500001 chr3L_16500001 RAL-223 2218 chr3L 16533520 16533585 chr3L 16533681 16533746 17 159 0.0 5.0 2.5 4.9 226 chr3L 16533520 intron CG43373 - chr3L 16533633 intron CG43373 - chr3L 16533746 intron CG43373 - chr3L_17_16530001 chr3L_16530001 RAL-223 2219 chr3L 16537824 16537867 chr3L 16537961 16538004 22 137 5.5 14.0 9.8 2.0 180 chr3L 16537824 intron CG43373 - chr3L 16537914 intron CG43373 - chr3L 16538004 intron CG43373 - chr3L_22_16535001 chr3L_16535001 RAL-223 2220 chr3L 16540008 16540082 chr3L 16540146 16540220 27 138 6.5 8.5 7.5 3.2 212 chr3L 16540008 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540220 intron CG43373 - chr3L_27_16540001 chr3L_16540001 RAL-223 2221 chr3L 16558158 16558195 chr3L 16558314 16558351 13 156 5.5 8.5 7.0 1.6 193 chr3L 16558158 intergenic CG4229 + chr3L 16558254 intergenic CG4229 + chr3L 16558351 intergenic CG4229 + chr3L_13_16555001 chr3L_16555001 RAL-223 2222 chr3L 16560258 16560333 chr3L 16560393 16560468 26 132 8.5 9.0 8.8 2.7 210 chr3L 16560258 intergenic not near genes chr3L 16560363 intergenic not near genes chr3L 16560468 intergenic not near genes chr3L_26_16560001 chr3L_16560001 RAL-223 2223 chr3L 16561064 16561140 chr3L 16561192 16561198 19 122 7.5 5.0 6.2 2.6 134 chr3L 16561064 intergenic not near genes chr3L 16561131 intergenic not near genes chr3L 16561198 intergenic not near genes chr3L_19_16560001 chr3L_16560001 RAL-223 2224 chr3L 16563181 16563257 chr3L 16563312 16563403 10 132 6.5 0.0 3.2 2.4 222 chr3L 16563181 intergenic Mipp1 - chr3L 16563292 intergenic Mipp1 - chr3L 16563403 intergenic Mipp1 - chr3L_10_16560001 chr3L_16560001 RAL-223 2225 chr3L 16616464 16616534 chr3L 16621842 16621912 297 43 5378 10.0 15.0 12.5 3.2 5448 chr3L 16616464 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621912 3` UTR Abl - chr3L_43_16615001 chr3L_16615001 RAL-223 2226 chr3L 16642760 16642814 chr3L 16642894 16642948 19 131 7.5 6.5 7.0 2.4 188 chr3L 16642760 intron Abl - chr3L 16642854 intron Abl - chr3L 16642948 intron Abl - chr3L_19_16640001 chr3L_16640001 RAL-223 2227 chr3L 16642816 16642836 chr3L 16642890 16642965 10 122 5.0 5.5 5.2 1.6 149 chr3L 16642816 intron Abl - chr3L 16642890 intron Abl - chr3L 16642965 intron Abl - chr3L_10_16640001 chr3L_16640001 RAL-223 2228 chr3L 16652638 16652710 chr3L 16652767 16652839 36 129 12.0 10.0 11.0 3.0 201 chr3L 16652638 intron Baldspot - chr3L 16652738 intron Baldspot - chr3L 16652839 intron Baldspot - chr3L_36_16650001 chr3L_16650001 RAL-223 2229 chr3L 16659525 16659531 chr3L 16659656 16659662 5 131 6.0 0.0 3.0 1.2 137 chr3L 16659525 intron Baldspot - chr3L 16659594 intron Baldspot - chr3L 16659662 intron Baldspot - chr3L_5_16655001 chr3L_16655001 RAL-223 2230 chr3L 16683981 16684036 chr3L 16689252 16689307 copia 13 5270 5.5 11.5 8.5 1.4 5326 chr3L 16683981 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689307 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_13_16685001 chr3L_16685001 RAL-223 2231 chr3L 16690126 16690165 chr3L 16690257 16690296 15 130 11.0 20.0 15.5 0.9 170 chr3L 16690126 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16690211 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L 16690296 intron,intron,intron Lasp -,CG43954 -,CR45179 + chr3L_15_16690001 chr3L_16690001 RAL-223 2232 chr3L 16698337 16698409 chr3L 16698484 16698556 17 143 7.0 6.0 6.5 2.3 219 chr3L 16698337 intron,intron Lasp -,CG43954 - chr3L 16698446 intron,intron Lasp -,CG43954 - chr3L 16698556 intron,intron Lasp -,CG43954 - chr3L_17_16695001 chr3L_16695001 RAL-223 2233 chr3L 16817828 16817900 chr3L 16818018 16818090 32 188 7.0 9.0 8.0 3.6 262 chr3L 16817828 intron,intron nudC +,CG13024 - chr3L 16817959 intron,intron nudC +,CG13024 - chr3L 16818090 intron,intron nudC +,CG13024 - chr3L_32_16815001 chr3L_16815001 RAL-223 2234 chr3L 16844979 16845038 chr3L 16845142 16845201 14 160 7.0 8.0 7.5 1.6 222 chr3L 16844979 5` UTR CG9669 - chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845201 intergenic CG9715 +,CG9669 - chr3L_14_16845001 chr3L_16845001 RAL-223 2235 chr3L 16866166 16866225 chr3L 16866307 16866365 12 139 7.5 4.0 5.8 1.8 199 chr3L 16866166 intron Lmpt + chr3L 16866266 intron Lmpt + chr3L 16866365 intron Lmpt + chr3L_12_16865001 chr3L_16865001 RAL-223 2236 chr3L 16869537 16869549 chr3L 16869670 16869682 7 133 18.0 15.0 16.5 0.4 145 chr3L 16869537 intron Lmpt + chr3L 16869610 intron Lmpt + chr3L 16869682 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-223 2237 chr3L 16869551 16869602 chr3L 16869669 16869735 18 132 5.0 15.0 10.0 1.6 184 chr3L 16869551 intron Lmpt + chr3L 16869643 intron Lmpt + chr3L 16869735 intron Lmpt + chr3L_18_16865001 chr3L_16865001 RAL-223 2238 chr3L 16873299 16873356 chr3L 16873454 16873511 20 155 7.5 11.5 9.5 1.9 212 chr3L 16873299 intron Lmpt + chr3L 16873405 intron Lmpt + chr3L 16873511 intron Lmpt + chr3L_20_16870001 chr3L_16870001 RAL-223 2239 chr3L 16882269 16882304 chr3L 16882407 16882441 9 137 7.0 8.5 7.8 1.0 172 chr3L 16882269 intron Lmpt + chr3L 16882355 intron Lmpt + chr3L 16882441 intron Lmpt + chr3L_9_16880001 chr3L_16880001 RAL-223 2240 chr3L 16945683 16945752 chr3L 16954886 16954955 roo 30 9201 8.0 9.0 8.5 3.2 9272 chr3L 16945683 exon Obp73a + chr3L 16950319 intergenic not near genes chr3L 16954955 5` UTR Nc73EF + chr3L_30_16950001 chr3L_16950001 RAL-223 2241 chr3L 17026759 17026812 chr3L 17026869 17026943 13 128 6.5 5.5 6.0 1.9 184 chr3L 17026759 exon Fit2 + chr3L 17026851 3` UTR Fit2 + chr3L 17026943 3` UTR Fit2 + chr3L_13_17025001 chr3L_17025001 RAL-223 2242 chr3L 17027127 17027187 chr3L 17027269 17027329 19 142 3.0 6.5 4.8 3.3 202 chr3L 17027127 intergenic Fit2 +,CG7730 + chr3L 17027228 intergenic Fit2 +,CG7730 + chr3L 17027329 intergenic CG7730 +,Fit2 + chr3L_19_17025001 chr3L_17025001 RAL-223 2243 chr3L 17034887 17034961 chr3L 17035120 17035199 G2 22 237 4.5 6.0 5.2 3.5 312 chr3L 17034887 intergenic not near genes chr3L 17035043 intergenic not near genes chr3L 17035199 intergenic beg + chr3L_22_17035001 chr3L_17035001 RAL-223 2244 chr3L 17084962 17085020 chr3L 17094161 17094219 roo 25 9199 9.0 11.0 10.0 2.3 9257 chr3L 17084962 intron Rbp6 - chr3L 17089590 intron Rbp6 - chr3L 17094219 intron Rbp6 - chr3L_25_17085001 chr3L_17085001 RAL-223 2245 chr3L 17103076 17103130 chr3L 17103203 17103257 21 124 11.0 13.0 12.0 1.6 181 chr3L 17103076 intron Rbp6 - chr3L 17103166 intron Rbp6 - chr3L 17103257 intron Rbp6 - chr3L_21_17100001 chr3L_17100001 RAL-223 2246 chr3L 17120603 17120674 chr3L 17120729 17120800 30 126 10.0 9.5 9.8 2.8 197 chr3L 17120603 intron Rbp6 - chr3L 17120702 intron Rbp6 - chr3L 17120800 intron Rbp6 - chr3L_30_17120001 chr3L_17120001 RAL-223 2247 chr3L 17142687 17142748 chr3L 17142965 17143021 24 278 8.5 10.5 9.5 2.3 334 chr3L 17142687 intron Rbp6 - chr3L 17142854 intron Rbp6 - chr3L 17143021 intron Rbp6 - chr3L_24_17140001 chr3L_17140001 RAL-223 2248 chr3L 17146914 17146977 chr3L 17147046 17147109 22 132 6.5 4.5 5.5 3.4 195 chr3L 17146914 intron Rbp6 - chr3L 17147012 intron Rbp6 - chr3L 17147109 intron Rbp6 - chr3L_22_17145001 chr3L_17145001 RAL-223 2249 chr3L 17149117 17149135 chr3L 17149248 17149266 5 131 16.5 0.0 8.2 0.5 149 chr3L 17149117 intron Rbp6 - chr3L 17149192 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-223 2250 chr3L 17217209 17217284 chr3L 17217339 17217351 28 127 7.5 7.0 7.2 3.4 142 chr3L 17217209 intron Rbp6 - chr3L 17217280 intron Rbp6 - chr3L 17217351 intron Rbp6 - chr3L_28_17215001 chr3L_17215001 RAL-223 2251 chr3L 17234026 17234042 chr3L 17234154 17234170 8 128 6.5 5.5 6.0 1.1 144 chr3L 17234026 intron Rbp6 - chr3L 17234098 intron Rbp6 - chr3L 17234170 intron Rbp6 - chr3L_8_17230001 chr3L_17230001 RAL-223 2252 chr3L 17272192 17272260 chr3L 17272375 17272443 24 183 4.0 6.0 5.0 4.0 251 chr3L 17272192 intergenic not near genes chr3L 17272318 intergenic not near genes chr3L 17272443 intergenic not near genes chr3L_24_17270001 chr3L_17270001 RAL-223 2253 chr3L 17351573 17351634 chr3L 17351883 17351944 29 310 9.0 7.0 8.0 3.2 371 chr3L 17351573 intergenic not near genes chr3L 17351758 intergenic not near genes chr3L 17351944 intergenic CG7692 + chr3L_29_17350001 chr3L_17350001 RAL-223 2254 chr3L 17408868 17408928 chr3L 17408994 17409054 15 125 7.5 5.0 6.2 2.1 186 chr3L 17408868 intron blot - chr3L 17408961 intron blot - chr3L 17409054 intron blot - chr3L_15_17405001 chr3L_17405001 RAL-223 2255 chr3L 17461068 17461118 chr3L 17461204 17461232 21 135 6.0 2.5 4.2 4.0 164 chr3L 17461068 intergenic not near genes chr3L 17461150 intergenic not near genes chr3L 17461232 intergenic not near genes chr3L_21_17460001 chr3L_17460001 RAL-223 2256 chr3L 17498052 17498112 chr3L 17498179 17498239 18 127 6.0 8.5 7.2 2.2 187 chr3L 17498052 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498239 intron Oatp74D + chr3L_18_17495001 chr3L_17495001 RAL-223 2257 chr3L 17516946 17517004 chr3L 17524549 17524612 412 33 7607 9.0 9.5 9.2 3.2 7666 chr3L 17516946 intron CG7564 + chr3L 17520779 intron CG7564 + chr3L 17524612 3` UTR CG7564 + chr3L_33_17520001 chr3L_17520001 RAL-223 2258 chr3L 17645270 17645331 chr3L 17645397 17645458 27 127 8.5 8.5 8.5 2.8 188 chr3L 17645270 intergenic CG43085 -,Pep - chr3L 17645364 intergenic CG43085 -,Pep - chr3L 17645458 intergenic CG43085 -,Pep - chr3L_27_17645001 chr3L_17645001 RAL-223 2259 chr3L 17678849 17678891 chr3L 17678983 17679025 18 134 10.0 0.0 5.0 3.0 176 chr3L 17678849 intron CG34251 + chr3L 17678937 intron CG34251 + chr3L 17679025 intron CG34251 + chr3L_18_17675001 chr3L_17675001 RAL-223 2260 chr3L 17730807 17730871 chr3L 17738187 17738251 mdg1 19 7379 7.0 10.0 8.5 2.0 7444 chr3L 17730807 intron Ccn + chr3L 17734529 intron Ccn + chr3L 17738251 intron Ccn + chr3L_19_17730001 chr3L_17730001 RAL-223 2261 chr3L 17789799 17789862 chr3L 17789925 17789988 11 126 9.0 8.5 8.8 1.1 189 chr3L 17789799 intergenic not near genes chr3L 17789894 intergenic not near genes chr3L 17789988 intergenic not near genes chr3L_11_17785001 chr3L_17785001 RAL-223 2262 chr3L 17790553 17790632 chr3L 17790868 17790947 27 315 7.5 6.5 7.0 3.4 394 chr3L 17790553 intergenic not near genes chr3L 17790750 intergenic CG42815 - chr3L 17790947 intergenic CG42815 - chr3L_27_17790001 chr3L_17790001 RAL-223 2263 chr3L 17791894 17791915 chr3L 17792021 17792042 4 127 4.5 5.5 5.0 0.7 148 chr3L 17791894 intergenic CG42816 -,CG42815 - chr3L 17791968 intergenic CG42816 -,CG42815 - chr3L 17792042 intergenic CG42816 - chr3L_4_17790001 chr3L_17790001 RAL-223 2264 chr3L 17799767 17799836 chr3L 17801604 17801673 S-element 22 1837 4.0 8.0 6.0 3.1 1906 chr3L 17799767 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801673 intron NUCB1 - chr3L_22_17800001 chr3L_17800001 RAL-223 2265 chr3L 17836179 17836236 chr3L 17836306 17836363 29 127 9.5 17.5 13.5 2.0 184 chr3L 17836179 intron Grd + chr3L 17836271 intron Grd + chr3L 17836363 intron Grd + chr3L_29_17835001 chr3L_17835001 RAL-223 2266 chr3L 17884644 17884711 chr3L 17884794 17884860 15 150 3.5 4.0 3.8 3.1 216 chr3L 17884644 intergenic CG5506 - chr3L 17884752 intergenic CG5506 - chr3L 17884860 intergenic CG5506 - chr3L_15_17880001 chr3L_17880001 RAL-223 2267 chr3L 17887827 17887870 chr3L 17887963 17888004 10 135 6.0 9.5 7.8 1.1 177 chr3L 17887827 intron CG7402 + chr3L 17887916 intron CG7402 + chr3L 17888004 intron CG7402 + chr3L_10_17885001 chr3L_17885001 RAL-223 2268 chr3L 17918338 17918395 chr3L 17921191 17921248 opus 11 2853 5.0 6.5 5.8 1.6 2910 chr3L 17918338 intergenic not near genes chr3L 17919793 intergenic not near genes chr3L 17921248 intergenic not near genes chr3L_11_17915001 chr3L_17915001 RAL-223 2269 chr3L 17991476 17991536 chr3L 17991648 17991708 26 172 9.5 6.5 8.0 2.9 232 chr3L 17991476 intron Eip75B - chr3L 17991592 intron Eip75B - chr3L 17991708 intron Eip75B - chr3L_26_17990001 chr3L_17990001 RAL-223 2270 chr3L 18006187 18006250 chr3L 18006361 18006409 24 173 3.5 10.5 7.0 3.0 222 chr3L 18006187 intron Eip75B - chr3L 18006298 intron Eip75B - chr3L 18006409 intron Eip75B - chr3L_24_18005001 chr3L_18005001 RAL-223 2271 chr3L 18029909 18029939 chr3L 18030036 18030066 7 127 14.0 0.0 7.0 0.9 157 chr3L 18029909 intron Eip75B - chr3L 18029988 intron Eip75B - chr3L 18030066 intron Eip75B - chr3L_7_18025001 chr3L_18025001 RAL-223 2272 chr3L 18047656 18047736 chr3L 18056763 18056843 roo 17 9107 2.5 6.5 4.5 3.1 9187 chr3L 18047656 intron Eip75B - chr3L 18052250 intron Eip75B - chr3L 18056843 intron Eip75B - chr3L_17_18050001 chr3L_18050001 RAL-223 2273 chr3L 18077107 18077141 chr3L 18077252 18077286 23 145 9.0 7.5 8.2 2.5 179 chr3L 18077107 intergenic CR45392 + chr3L 18077196 intergenic CR45392 + chr3L 18077286 intergenic CR45392 + chr3L_23_18075001 chr3L_18075001 RAL-223 2274 chr3L 18092733 18092760 chr3L 18092898 18092925 12 165 12.5 0.0 6.2 1.7 192 chr3L 18092733 intron CG13698 - chr3L 18092829 intron CG13698 - chr3L 18092925 intron CG13698 - chr3L_12_18090001 chr3L_18090001 RAL-223 2275 chr3L 18113273 18113282 chr3L 18113420 18113429 5 147 2.5 12.5 7.5 0.6 156 chr3L 18113273 intron,intron CG32195 +,CG7341 + chr3L 18113351 intron,intron CG32195 +,CG7341 + chr3L 18113429 intron,intron CG32195 +,CG7341 + chr3L_5_18110001 chr3L_18110001 RAL-223 2276 chr3L 18124052 18124131 chr3L 18124566 18124645 24 513 4.0 5.0 4.5 4.4 593 chr3L 18124052 intergenic not near genes chr3L 18124348 intergenic not near genes chr3L 18124645 intergenic not near genes chr3L_24_18120001 chr3L_18120001 RAL-223 2277 chr3L 18132987 18133026 chr3L 18133128 18133166 12 139 6.5 0.0 3.2 2.9 179 chr3L 18132987 intergenic Cyp312a1 - chr3L 18133076 intergenic Cyp312a1 - chr3L 18133166 intergenic Cyp312a1 - chr3L_12_18130001 chr3L_18130001 RAL-223 2278 chr3L 18135647 18135687 chr3L 18135788 18135828 7 141 17.0 0.0 8.5 0.7 181 chr3L 18135647 intergenic CR44669 - chr3L 18135738 intergenic CR44669 - chr3L 18135828 3` UTR CR44669 - chr3L_7_18135001 chr3L_18135001 RAL-223 2279 chr3L 18150270 18150329 chr3L 18150417 18150476 19 147 7.5 9.0 8.2 2.1 206 chr3L 18150270 intron CG7330 + chr3L 18150373 intron CG7330 + chr3L 18150476 intron CG7330 + chr3L_19_18150001 chr3L_18150001 RAL-223 2280 chr3L 18163943 18164240 chr3L 18164195 18164464 25 242 0.0 0.0 0.0 25.0 521 chr3L 18163943 intergenic not near genes chr3L 18164204 intergenic not near genes chr3L 18164464 intergenic not near genes chr3L_25_18160001 chr3L_18160001 RAL-223 2281 chr3L 18172642 18172704 chr3L 18172768 18172830 19 125 6.5 7.0 6.8 2.4 188 chr3L 18172642 intron W - chr3L 18172736 intron W - chr3L 18172830 intron W - chr3L_19_18170001 chr3L_18170001 RAL-223 2282 chr3L 18198929 18198935 chr3L 24821492 24821493 19 6622563 1.0 23.0 12.0 1.5 6622564 chr3L 18198929 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821493 intergenic not near genes chr3L_19_21510001 chr3L_21510001 RAL-223 2283 chr3L 18207873 18207928 chr3L 18208008 18208086 11 137 0.5 0.0 0.2 9.2 213 chr3L 18207873 intergenic not near genes chr3L 18207980 intergenic not near genes chr3L 18208086 intergenic not near genes chr3L_11_18205001 chr3L_18205001 RAL-223 2284 chr3L 18226077 18226098 chr3L 18226212 18226233 6 135 0.0 11.5 5.8 0.9 156 chr3L 18226077 intergenic not near genes chr3L 18226155 intergenic not near genes chr3L 18226233 intergenic not near genes chr3L_6_18225001 chr3L_18225001 RAL-223 2285 chr3L 18230025 18230061 chr3L 18230405 18230441 7 380 0.0 3.5 1.8 2.5 416 chr3L 18230025 intergenic not near genes chr3L 18230233 intergenic not near genes chr3L 18230441 intergenic not near genes chr3L_7_18230001 chr3L_18230001 RAL-223 2286 chr3L 18267813 18267989 chr3L 18267940 18268116 32 127 2.0 0.0 1.0 16.0 303 chr3L 18267813 intergenic not near genes chr3L 18267964 intergenic not near genes chr3L 18268116 intergenic not near genes chr3L_32_18265001 chr3L_18265001 RAL-223 2287 chr3L 18301303 18301380 chr3L 18301441 18301519 14 138 5.0 3.5 4.2 2.7 216 chr3L 18301303 intergenic CG13700 - chr3L 18301411 intergenic CG13700 - chr3L 18301519 intergenic CG13700 - chr3L_14_18300001 chr3L_18300001 RAL-223 2288 chr3L 18325708 18325742 chr3L 18325837 18325871 7 129 9.5 0.0 4.8 1.2 163 chr3L 18325708 intergenic not near genes chr3L 18325790 intergenic not near genes chr3L 18325871 intergenic not near genes chr3L_7_18325001 chr3L_18325001 RAL-223 2289 chr3L 18343510 18343530 chr3L 18343668 18343688 7 158 6.0 6.5 6.2 1.0 178 chr3L 18343510 intergenic not near genes chr3L 18343599 intergenic not near genes chr3L 18343688 intergenic not near genes chr3L_7_18340001 chr3L_18340001 RAL-223 2290 chr3L 18375927 18375932 chr3L 18376062 18376067 4 135 20.5 6.5 13.5 0.3 140 chr3L 18375927 intergenic not near genes chr3L 18375997 intergenic not near genes chr3L 18376067 intergenic not near genes chr3L_4_18375001 chr3L_18375001 RAL-223 2291 chr3L 18375935 18376003 chr3L 18376059 18376138 29 133 9.5 6.5 8.0 3.2 203 chr3L 18375935 intergenic not near genes chr3L 18376036 intergenic not near genes chr3L 18376138 intergenic not near genes chr3L_29_18375001 chr3L_18375001 RAL-223 2292 chr3L 18406081 18406154 chr3L 18406207 18406280 20 125 4.5 7.0 5.8 2.9 199 chr3L 18406081 intergenic not near genes chr3L 18406180 intergenic not near genes chr3L 18406280 intergenic not near genes chr3L_20_18405001 chr3L_18405001 RAL-223 2293 chr3L 18408689 18408756 chr3L 18408825 18408892 33 135 4.5 7.0 5.8 4.9 203 chr3L 18408689 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408892 intergenic not near genes chr3L_33_18405001 chr3L_18405001 RAL-223 2294 chr3L 9013690 9013691 chr3L 18417066 18417066 7 9403375 38.0 39.0 38.5 0.2 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_7_13715001 chr3L_13715001 RAL-223 2295 chr3L 18436015 18436086 chr3L 18436163 18436234 28 148 5.5 7.0 6.2 3.9 219 chr3L 18436015 intergenic not near genes chr3L 18436124 intergenic not near genes chr3L 18436234 intergenic not near genes chr3L_28_18435001 chr3L_18435001 RAL-223 2296 chr3L 18445202 18445266 chr3L 18445330 18445381 13 125 4.5 5.5 5.0 2.2 179 chr3L 18445202 intergenic not near genes chr3L 18445292 intergenic not near genes chr3L 18445381 intergenic not near genes chr3L_13_18445001 chr3L_18445001 RAL-223 2297 chr3L 18448582 18448620 chr3L 18448724 18448762 21 142 8.0 6.5 7.2 2.6 180 chr3L 18448582 intergenic not near genes chr3L 18448672 intergenic not near genes chr3L 18448762 intergenic not near genes chr3L_21_18445001 chr3L_18445001 RAL-223 2298 chr3L 18456223 18456294 chr3L 18456361 18456432 32 138 8.5 7.0 7.8 3.6 209 chr3L 18456223 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456432 3` UTR CR44670 - chr3L_32_18455001 chr3L_18455001 RAL-223 2299 chr3L 18506095 18506154 chr3L 18509608 18509667 F-element 27 3513 7.5 12.5 10.0 2.5 3572 chr3L 18506095 intergenic not near genes chr3L 18507881 intergenic not near genes chr3L 18509667 intergenic not near genes chr3L_27_18505001 chr3L_18505001 RAL-223 2300 chr3L 18528583 18528652 chr3L 18537794 18537863 roo 29 9211 11.0 5.5 8.2 3.2 9280 chr3L 18528583 intergenic not near genes chr3L 18533223 intergenic not near genes chr3L 18537863 intergenic not near genes chr3L_29_18530001 chr3L_18530001 RAL-223 2301 chr3L 18546653 18546733 chr3L 18546797 18546797 30 141 4.5 5.5 5.0 5.0 144 chr3L 18546653 intergenic not near genes chr3L 18546725 intergenic not near genes chr3L 18546797 intergenic not near genes chr3L_30_18545001 chr3L_18545001 RAL-223 2302 chr3L 18555068 18555079 chr3L 18555202 18555213 5 134 9.0 5.5 7.2 0.6 145 chr3L 18555068 intergenic not near genes chr3L 18555140 intergenic not near genes chr3L 18555213 intergenic not near genes chr3L_5_18555001 chr3L_18555001 RAL-223 2303 chr3L 18566975 18567054 chr3L 18567111 18567190 31 134 6.5 4.5 5.5 4.8 215 chr3L 18566975 intron AstC-R1 + chr3L 18567082 intron AstC-R1 + chr3L 18567190 intron AstC-R1 + chr3L_31_18565001 chr3L_18565001 RAL-223 2304 chr3L 18579524 18579598 chr3L 18579702 18579743 24 175 6.0 10.0 8.0 2.7 219 chr3L 18579524 intergenic not near genes chr3L 18579634 intergenic not near genes chr3L 18579743 intergenic not near genes chr3L_24_18575001 chr3L_18575001 RAL-223 2305 chr3L 18593904 18593981 chr3L 18595934 18596014 Doc 20 2031 3.5 4.5 4.0 4.0 2110 chr3L 18593904 intergenic term - chr3L 18594959 intergenic not near genes chr3L 18596014 intergenic CR45389 + chr3L_20_18590001 chr3L_18590001 RAL-223 2306 chr3L 18606704 18606775 chr3L 18606952 18607023 30 246 5.0 8.5 6.8 3.8 319 chr3L 18606704 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606864 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607023 intron,intron,intron CG13380 -,CG4174 -,CG18233 + chr3L_30_18605001 chr3L_18605001 RAL-223 2307 chr3L 18607829 18607857 chr3L 18607974 18608002 15 145 10.0 4.5 7.2 1.8 173 chr3L 18607829 intron,intron,exon CG13380 -,CG4174 -,CG18231 + chr3L 18607916 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L 18608002 intron,intron,intron CG13380 -,CG4174 -,CG18231 + chr3L_15_18605001 chr3L_18605001 RAL-223 2308 chr3L 18638548 18638601 chr3L 18638692 18638745 21 144 7.0 11.0 9.0 2.1 197 chr3L 18638548 intron MYPT-75D + chr3L 18638646 intron MYPT-75D + chr3L 18638745 intron MYPT-75D + chr3L_21_18635001 chr3L_18635001 RAL-223 2309 chr3L 18656141 18656206 chr3L 18656275 18656341 37 130 9.0 8.5 8.8 3.8 200 chr3L 18656141 intron MYPT-75D + chr3L 18656241 intron MYPT-75D + chr3L 18656341 intron MYPT-75D + chr3L_37_18655001 chr3L_18655001 RAL-223 2310 chr3L 18688124 18688134 chr3L 18688275 18688279 6 150 29.0 31.5 30.2 0.2 155 chr3L 18688124 intergenic not near genes chr3L 18688202 intergenic not near genes chr3L 18688279 intergenic not near genes chr3L_6_18685001 chr3L_18685001 RAL-223 2311 chr3L 18688135 18688156 chr3L 18688270 18688286 12 145 21.5 30.5 26.0 0.4 151 chr3L 18688135 intergenic not near genes chr3L 18688210 intergenic not near genes chr3L 18688286 intergenic not near genes chr3L_12_18685001 chr3L_18685001 RAL-223 2312 chr3L 18679382 18679446 chr3L 18689086 18689150 34 9704 64.0 65.0 64.5 0.5 9768 chr3L 18679382 intergenic not near genes chr3L 18684266 3` UTR Cyp12c1 - chr3L 18689150 intergenic not near genes chr3L_34_18680001 chr3L_18680001 RAL-223 2313 chr3L 18710742 18710789 chr3L 18718742 18718789 Stalker2 10 8000 7.5 2.0 4.8 1.7 8047 chr3L 18710742 intergenic not near genes chr3L 18714766 intergenic not near genes chr3L 18718789 intergenic not near genes chr3L_10_18710001 chr3L_18710001 RAL-223 2314 chr3L 18721720 18721798 chr3L 18721861 18721939 20 140 8.0 6.5 7.2 2.4 219 chr3L 18721720 intergenic CG12477 - chr3L 18721830 intergenic CG12477 - chr3L 18721939 3` UTR CG12477 - chr3L_20_18720001 chr3L_18720001 RAL-223 2315 chr3L 18730333 18730404 chr3L 18730556 18730634 20 228 7.5 6.0 6.8 2.6 301 chr3L 18730333 intergenic not near genes chr3L 18730484 intergenic not near genes chr3L 18730634 intergenic not near genes chr3L_20_18730001 chr3L_18730001 RAL-223 2316 chr3L 18741948 18741969 chr3L 18742084 18742098 6 134 9.0 4.5 6.8 0.8 150 chr3L 18741948 intergenic not near genes chr3L 18742023 intergenic not near genes chr3L 18742098 intergenic not near genes chr3L_6_18740001 chr3L_18740001 RAL-223 2317 chr3L 18753497 18753555 chr3L 18753629 18753687 15 132 10.5 4.5 7.5 1.8 190 chr3L 18753497 intron ftz-f1 - chr3L 18753592 intron ftz-f1 - chr3L 18753687 intron ftz-f1 - chr3L_15_18750001 chr3L_18750001 RAL-223 2318 chr3L 18772366 18772432 chr3L 18781097 18781163 roo 22 8731 5.5 9.0 7.2 2.7 8797 chr3L 18772366 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781163 intron ftz-f1 - chr3L_22_18775001 chr3L_18775001 RAL-223 2319 chr3L 18784344 18784406 chr3L 18784483 18784540 22 139 6.5 10.0 8.2 2.4 196 chr3L 18784344 intron ftz-f1 - chr3L 18784442 intron ftz-f1 - chr3L 18784540 intron ftz-f1 - chr3L_22_18780001 chr3L_18780001 RAL-223 2320 chr3L 18797278 18797332 chr3L 18797412 18797466 22 134 9.5 12.5 11.0 1.8 188 chr3L 18797278 intron ftz-f1 - chr3L 18797372 intron ftz-f1 - chr3L 18797466 intron ftz-f1 - chr3L_22_18795001 chr3L_18795001 RAL-223 2321 chr3L 18810125 18810178 chr3L 18810257 18810310 26 132 5.5 0.0 2.8 6.8 185 chr3L 18810125 intron CG14073 - chr3L 18810218 intron CG14073 - chr3L 18810310 intron CG14073 - chr3L_26_18810001 chr3L_18810001 RAL-223 2322 chr3L 18831800 18831874 chr3L 18831936 18832010 23 132 5.0 4.5 4.8 4.0 210 chr3L 18831800 intron Indy - chr3L 18831905 intron Indy - chr3L 18832010 intron Indy - chr3L_23_18830001 chr3L_18830001 RAL-223 2323 chr3L 18843824 18843881 chr3L 18843972 18844029 15 148 9.0 5.5 7.2 1.8 205 chr3L 18843824 intron Indy - chr3L 18843926 intron Indy - chr3L 18844029 intron Indy - chr3L_15_18840001 chr3L_18840001 RAL-223 2324 chr3L 18853959 18854024 chr3L 18854110 18854175 20 151 2.5 5.5 4.0 4.0 216 chr3L 18853959 intergenic CR45387 + chr3L 18854067 intergenic CR45387 + chr3L 18854175 intergenic CR45387 + chr3L_20_18850001 chr3L_18850001 RAL-223 2325 chr3L 18878624 18878686 chr3L 18878756 18878818 32 131 12.5 8.5 10.5 2.8 194 chr3L 18878624 3` UTR CG3961 - chr3L 18878721 3` UTR CG3961 - chr3L 18878818 3` UTR CG3961 - chr3L_32_18875001 chr3L_18875001 RAL-223 2326 chr3L 18896768 18896789 chr3L 18896953 18896974 6 185 3.5 11.5 7.5 0.7 206 chr3L 18896768 intron CG3902 - chr3L 18896871 intron CG3902 - chr3L 18896974 intron CG3902 - chr3L_6_18895001 chr3L_18895001 RAL-223 2327 chr3L 18924433 18924500 chr3L 18924559 18924626 17 126 4.5 7.0 5.8 2.5 193 chr3L 18924433 intron CG32204 - chr3L 18924530 intron CG32204 - chr3L 18924626 intron CG32204 - chr3L_17_18920001 chr3L_18920001 RAL-223 2328 chr3L 18933582 18933657 chr3L 18933726 18933800 18 143 5.0 7.5 6.2 2.5 218 chr3L 18933582 intron CG32204 - chr3L 18933691 intron CG32204 - chr3L 18933800 intron CG32204 - chr3L_18_18930001 chr3L_18930001 RAL-223 2329 chr3L 18935792 18935856 chr3L 18935931 18935995 21 139 5.0 8.0 6.5 2.8 203 chr3L 18935792 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935995 intron CG32204 - chr3L_21_18935001 chr3L_18935001 RAL-223 2330 chr3L 18942810 18942876 chr3L 18942973 18943039 22 158 6.0 9.5 7.8 2.5 229 chr3L 18942810 intron CG32204 - chr3L 18942924 intron CG32204 - chr3L 18943039 intron CG32204 - chr3L_22_18940001 chr3L_18940001 RAL-223 2331 chr3L 18948863 18948905 chr3L 18949139 18949181 15 276 0.0 10.5 5.2 2.4 318 chr3L 18948863 intergenic not near genes chr3L 18949022 intergenic not near genes chr3L 18949181 intergenic not near genes chr3L_15_18945001 chr3L_18945001 RAL-223 2332 chr3L 18969501 18969577 chr3L 18969627 18969703 29 126 4.5 8.5 6.5 3.9 202 chr3L 18969501 intergenic not near genes chr3L 18969602 intergenic not near genes chr3L 18969703 intergenic not near genes chr3L_29_18965001 chr3L_18965001 RAL-223 2333 chr3L 18994339 18994341 chr3L 23730762 23730764 G2 4 4736423 18.5 45.0 31.8 0.1 4736425 chr3L 18994339 intron CG18135 - chr3L 21362552 intergenic not near genes chr3L 23730764 intergenic not near genes chr3L_4_21360001 chr3L_21360001 RAL-223 2334 chr3L 19008795 19008860 chr3L 19009186 19009248 jockey 17 379 8.5 9.0 8.8 1.7 453 chr3L 19008795 intron nkd - chr3L 19009022 intron nkd - chr3L 19009248 intron nkd - chr3L_17_19005001 chr3L_19005001 RAL-223 2335 chr3L 19015133 19015217 chr3L 19015267 19015345 23 132 10.0 9.0 9.5 2.2 212 chr3L 19015133 intron nkd - chr3L 19015239 intron nkd - chr3L 19015345 intron nkd - chr3L_23_19015001 chr3L_19015001 RAL-223 2336 chr3L 19074709 19074772 chr3L 19074899 19074962 29 190 14.5 9.0 11.8 2.3 253 chr3L 19074709 intron Mkp3 - chr3L 19074836 intron Mkp3 - chr3L 19074962 intron Mkp3 - chr3L_29_19070001 chr3L_19070001 RAL-223 2337 chr3L 19081993 19082010 chr3L 19082145 19082162 11 152 12.0 8.5 10.2 1.0 169 chr3L 19081993 intron Mkp3 - chr3L 19082078 intron Mkp3 - chr3L 19082162 intron Mkp3 - chr3L_11_19080001 chr3L_19080001 RAL-223 2338 chr3L 19082012 19082062 chr3L 19082141 19082214 17 150 6.0 7.5 6.8 2.2 202 chr3L 19082012 intron Mkp3 - chr3L 19082113 intron Mkp3 - chr3L 19082214 intron Mkp3 - chr3L_17_19080001 chr3L_19080001 RAL-223 2339 chr3L 19117006 19117020 chr3L 19124503 19124517 mdg1 12 7497 19.5 7.5 13.5 0.8 7511 chr3L 19117006 intron CG14082 - chr3L 19120762 intron CG14082 - chr3L 19124517 intron CG14082 - chr3L_12_19120001 chr3L_19120001 RAL-223 2340 chr3L 19117023 19117074 chr3L 19124502 19124571 mdg1 19 7495 9.0 7.5 8.2 2.1 7548 chr3L 19117023 intron CG14082 - chr3L 19120797 intron CG14082 - chr3L 19124571 intron CG14082 - chr3L_19_19120001 chr3L_19120001 RAL-223 2341 chr3L 19127332 19127385 chr3L 19127457 19127511 8 125 7.0 7.5 7.2 1.0 179 chr3L 19127332 intron CG14082 - chr3L 19127422 intron CG14082 - chr3L 19127511 intron CG14082 - chr3L_8_19125001 chr3L_19125001 RAL-223 2342 chr3L 19127683 19127753 chr3L 19127821 19127881 27 137 9.0 11.0 10.0 2.5 198 chr3L 19127683 intron CG14082 - chr3L 19127782 intron CG14082 - chr3L 19127881 intron CG14082 - chr3L_27_19125001 chr3L_19125001 RAL-223 2343 chr3L 19162315 19162371 chr3L 19162425 19162497 6 123 8.5 10.0 9.2 0.6 182 chr3L 19162315 intron fz2 - chr3L 19162406 intron fz2 - chr3L 19162497 intron fz2 - chr3L_6_19160001 chr3L_19160001 RAL-223 2344 chr3L 19182343 19182405 chr3L 19182474 19182536 15 131 6.5 5.5 6.0 2.1 193 chr3L 19182343 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182536 intron fz2 - chr3L_15_19180001 chr3L_19180001 RAL-223 2345 chr3L 19208012 19208086 chr3L 19209436 19209510 Doc 22 1424 4.0 6.0 5.0 3.7 1498 chr3L 19208012 intron fz2 - chr3L 19208761 intron fz2 - chr3L 19209510 intron fz2 - chr3L_22_19205001 chr3L_19205001 RAL-223 2346 chr3L 19216471 19216542 chr3L 19216598 19216669 13 127 4.5 7.0 5.8 1.9 198 chr3L 19216471 intron fz2 - chr3L 19216570 intron fz2 - chr3L 19216669 intron fz2 - chr3L_13_19215001 chr3L_19215001 RAL-223 2347 chr3L 19220633 19220633 chr3L 22908066 22908067 33 3687434 42.0 35.0 38.5 0.8 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_33_21060001 chr3L_21060001 RAL-223 2348 chr3L 19220634 19220634 chr3L 22908066 22908067 21 3687432 42.0 35.0 38.5 0.5 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_21_21060001 chr3L_21060001 RAL-223 2349 chr3L 19220635 19220636 chr3L 22908066 22908067 18 3687431 42.0 35.0 38.5 0.5 3687432 chr3L 19220635 intron fz2 - chr3L 21064351 intron siz + chr3L 22908067 intergenic not near genes chr3L_18_21060001 chr3L_21060001 RAL-223 2350 chr3L 19220637 19220637 chr3L 22908066 22908066 22 3687429 42.0 35.0 38.5 0.6 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_22_21060001 chr3L_21060001 RAL-223 2351 chr3L 19238677 19238748 chr3L 19238834 19238905 29 157 9.0 4.0 6.5 3.9 228 chr3L 19238677 intergenic not near genes chr3L 19238791 intergenic not near genes chr3L 19238905 intergenic not near genes chr3L_29_19235001 chr3L_19235001 RAL-223 2352 chr3L 19244064 19244080 chr3L 19244192 19244208 4 128 16.5 8.0 12.2 0.3 144 chr3L 19244064 intergenic not near genes chr3L 19244136 intergenic not near genes chr3L 19244208 intergenic not near genes chr3L_4_19240001 chr3L_19240001 RAL-223 2353 chr3L 19244082 19244135 chr3L 19244190 19244263 20 124 4.5 8.0 6.2 2.8 181 chr3L 19244082 intergenic not near genes chr3L 19244172 intergenic not near genes chr3L 19244263 intergenic not near genes chr3L_20_19240001 chr3L_19240001 RAL-223 2354 chr3L 19262161 19262235 chr3L 19262291 19262367 12 131 0.0 5.0 2.5 3.4 206 chr3L 19262161 3` UTR Bet1 + chr3L 19262264 3` UTR,3` UTR Bet1 +,Max - chr3L 19262367 3` UTR,3` UTR Bet1 +,Max - chr3L_12_19260001 chr3L_19260001 RAL-223 2355 chr3L 19269769 19269844 chr3L 19270023 19270098 27 251 8.5 5.0 6.8 3.5 329 chr3L 19269769 intron CG14085 + chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270098 intron,exon CG14085 +,CG14088 - chr3L_27_19265001 chr3L_19265001 RAL-223 2356 chr3L 19279632 19279708 chr3L 19279774 19279822 21 139 10.0 10.0 10.0 1.9 190 chr3L 19279632 exon CG14086 + chr3L 19279727 exon CG14086 + chr3L 19279822 exon CG14086 + chr3L_21_19275001 chr3L_19275001 RAL-223 2357 chr3L 19319591 19319641 chr3L 19319718 19319767 7 126 2.0 9.0 5.5 1.1 176 chr3L 19319591 intron pip - chr3L 19319679 intron pip - chr3L 19319767 intron pip - chr3L_7_19315001 chr3L_19315001 RAL-223 2358 chr3L 19398892 19398929 chr3L 19403657 19403696 F-element 13 4765 7.0 9.0 8.0 1.4 4804 chr3L 19398892 intron CG32206 - chr3L 19401294 intron CG32206 - chr3L 19403696 intron CG32206 - chr3L_13_19400001 chr3L_19400001 RAL-223 2359 chr3L 19404929 19405000 chr3L 19405056 19405127 23 126 3.5 7.5 5.5 3.5 198 chr3L 19404929 intron CG32206 - chr3L 19405028 intron CG32206 - chr3L 19405127 intron CG32206 - chr3L_23_19405001 chr3L_19405001 RAL-223 2360 chr3L 19437018 19437046 chr3L 19437152 19437180 9 133 3.5 13.5 8.5 0.9 162 chr3L 19437018 intergenic not near genes chr3L 19437099 intergenic not near genes chr3L 19437180 intergenic not near genes chr3L_9_19435001 chr3L_19435001 RAL-223 2361 chr3L 19439217 19439290 chr3L 19439356 19439426 13 139 5.0 9.0 7.0 1.6 209 chr3L 19439217 intergenic not near genes chr3L 19439322 intergenic not near genes chr3L 19439426 intergenic CR45732 - chr3L_13_19435001 chr3L_19435001 RAL-223 2362 chr3L 19457867 19457871 chr3L 19457995 19457999 4 128 21.0 7.5 14.2 0.3 132 chr3L 19457867 intergenic not near genes chr3L 19457933 intergenic not near genes chr3L 19457999 intergenic not near genes chr3L_4_19455001 chr3L_19455001 RAL-223 2363 chr3L 19457873 19457934 chr3L 19457991 19458062 24 127 8.5 9.5 9.0 2.4 189 chr3L 19457873 intergenic not near genes chr3L 19457968 intergenic not near genes chr3L 19458062 intergenic not near genes chr3L_24_19455001 chr3L_19455001 RAL-223 2364 chr3L 19488486 19488496 chr3L 19488606 19488628 4 129 4.5 13.5 9.0 0.4 142 chr3L 19488486 intergenic pncr009:3L -,CG32212 + chr3L 19488557 intergenic pncr009:3L -,CG32212 + chr3L 19488628 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-223 2365 chr3L 19703806 19703874 chr3L 19704010 19704078 34 204 9.0 14.0 11.5 2.7 272 chr3L 19703806 intron serp - chr3L 19703942 intron serp - chr3L 19704078 intron serp - chr3L_34_19700001 chr3L_19700001 RAL-223 2366 chr3L 19779469 19779541 chr3L 19779615 19779684 20 143 9.0 5.5 7.2 2.4 215 chr3L 19779469 intron,intron CG42637 -,Gyc76C - chr3L 19779576 intron,intron CG42637 -,Gyc76C - chr3L 19779684 intron,intron CG42637 -,Gyc76C - chr3L_20_19775001 chr3L_19775001 RAL-223 2367 chr3L 19820248 19820319 chr3L 19827847 19827918 412 40 7599 6.5 5.5 6.0 5.7 7670 chr3L 19820248 intron Deaf1 + chr3L 19824083 intron Deaf1 + chr3L 19827918 intron Deaf1 + chr3L_40_19820001 chr3L_19820001 RAL-223 2368 chr3L 19848466 19848521 chr3L 19857706 19857761 roo 33 9239 11.5 11.5 11.5 2.6 9295 chr3L 19848466 intron Papss + chr3L 19853114 intron Papss + chr3L 19857761 intron Papss + chr3L_33_19850001 chr3L_19850001 RAL-223 2369 chr3L 19861780 19861829 chr3L 19863618 19863667 S-element 15 1838 14.5 9.0 11.8 1.2 1887 chr3L 19861780 5` UTR CR45433 + chr3L 19862724 intergenic not near genes chr3L 19863667 intergenic not near genes chr3L_15_19860001 chr3L_19860001 RAL-223 2370 chr3L 19933490 19933560 chr3L 19934362 19934432 30 872 7.0 6.0 6.5 4.0 942 chr3L 19933490 intergenic CR45678 + chr3L 19933961 5` UTR CR45678 + chr3L 19934432 intergenic CR45678 + chr3L_30_19930001 chr3L_19930001 RAL-223 2371 chr3L 19981161 19981227 chr3L 19981291 19981357 20 130 5.0 6.5 5.8 2.9 196 chr3L 19981161 intergenic not near genes chr3L 19981259 intergenic CG17732 + chr3L 19981357 intergenic CG17732 + chr3L_20_19980001 chr3L_19980001 RAL-223 2372 chr3L 20083391 20083424 chr3L 20083522 20083555 7 131 12.5 14.0 13.2 0.5 164 chr3L 20083391 intron sNPF-R - chr3L 20083473 intron sNPF-R - chr3L 20083555 intron sNPF-R - chr3L_7_20080001 chr3L_20080001 RAL-223 2373 chr3L 20086747 20086820 chr3L 20086875 20086957 20 130 5.0 5.5 5.2 3.2 210 chr3L 20086747 intron sNPF-R - chr3L 20086852 intron sNPF-R - chr3L 20086957 intron sNPF-R - chr3L_20_20085001 chr3L_20085001 RAL-223 2374 chr3L 20096045 20096093 chr3L 20096199 20096237 12 150 9.5 0.0 4.8 2.1 192 chr3L 20096045 intergenic not near genes chr3L 20096141 intergenic not near genes chr3L 20096237 intergenic not near genes chr3L_12_20095001 chr3L_20095001 RAL-223 2375 chr3L 20113437 20113498 chr3L 20113582 20113643 21 145 10.0 10.5 10.2 1.9 206 chr3L 20113437 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113643 intergenic not near genes chr3L_21_20110001 chr3L_20110001 RAL-223 2376 chr3L 20113612 20113683 chr3L 20122919 20122990 roo 21 9307 11.0 7.5 9.2 2.1 9378 chr3L 20113612 intergenic not near genes chr3L 20118301 intergenic not near genes chr3L 20122990 intergenic not near genes chr3L_21_20115001 chr3L_20115001 RAL-223 2377 chr3L 20143042 20143106 chr3L 20143172 20143236 31 130 7.0 13.0 10.0 2.8 194 chr3L 20143042 intergenic not near genes chr3L 20143139 intergenic not near genes chr3L 20143236 intergenic not near genes chr3L_31_20140001 chr3L_20140001 RAL-223 2378 chr3L 20148240 20148310 chr3L 20148380 20148450 26 140 2.5 8.5 5.5 4.0 210 chr3L 20148240 intergenic not near genes chr3L 20148345 intergenic not near genes chr3L 20148450 intergenic not near genes chr3L_26_20145001 chr3L_20145001 RAL-223 2379 chr3L 20187411 20187485 chr3L 20187540 20187614 25 129 49.0 43.0 46.0 0.5 203 chr3L 20187411 intron CG42674 - chr3L 20187512 intron CG42674 - chr3L 20187614 intron CG42674 - chr3L_25_20185001 chr3L_20185001 RAL-223 2380 chr3L 20212562 20212586 chr3L 20218189 20218213 mdg3 10 5627 16.0 9.0 12.5 0.7 5651 chr3L 20212562 intergenic CG7017 - chr3L 20215388 intergenic not near genes chr3L 20218213 intergenic CG6933 - chr3L_10_20215001 chr3L_20215001 RAL-223 2381 chr3L 20247707 20247773 chr3L 20247880 20247944 17 173 8.0 2.0 5.0 2.8 237 chr3L 20247707 intergenic rdgC + chr3L 20247826 intergenic rdgC + chr3L 20247944 intergenic rdgC + chr3L_17_20245001 chr3L_20245001 RAL-223 2382 chr3L 20257287 20257353 chr3L 20258457 20258518 pogo 29 1170 10.0 4.5 7.2 3.5 1231 chr3L 20257287 intron rdgC + chr3L 20257902 intron rdgC + chr3L 20258518 intron rdgC + chr3L_29_20255001 chr3L_20255001 RAL-223 2383 chr3L 20283629 20283703 chr3L 20283763 20283837 38 133 8.0 8.0 8.0 4.2 208 chr3L 20283629 intron gogo - chr3L 20283733 intron gogo - chr3L 20283837 intron gogo - chr3L_38_20280001 chr3L_20280001 RAL-223 2384 chr3L 20321112 20321120 chr3L 20342868 20342876 17.6 6 21757 13.5 60.0 36.8 0.2 21764 chr3L 20321112 exon Spn77Bb + chr3L 20331994 intergenic not near genes chr3L 20342876 exon Spn77Bc + chr3L_6_20330001 chr3L_20330001 RAL-223 2385 chr3L 20345560 20345572 chr3L 20345691 20345691 4 128 26.0 9.5 17.8 0.2 131 chr3L 20345560 intergenic Rbbp5 - chr3L 20345626 intergenic Rbbp5 - chr3L 20345691 intergenic Rbbp5 - chr3L_4_20345001 chr3L_20345001 RAL-223 2386 chr3L 20345574 20345630 chr3L 20345690 20345761 18 130 13.5 10.0 11.8 1.4 187 chr3L 20345574 intergenic Rbbp5 - chr3L 20345668 intergenic Rbbp5 - chr3L 20345761 3` UTR Rbbp5 - chr3L_18_20345001 chr3L_20345001 RAL-223 2387 chr3L 20386894 20386970 chr3L 20387046 20387108 39 151 12.5 8.5 10.5 3.4 214 chr3L 20386894 intron fbl + chr3L 20387001 intron fbl + chr3L 20387108 intron fbl + chr3L_39_20385001 chr3L_20385001 RAL-223 2388 chr3L 20476724 20476779 chr3L 20484373 20484428 springer 25 7649 9.0 19.0 14.0 1.7 7704 chr3L 20476724 3` UTR isoQC + chr3L 20480576 intergenic not near genes chr3L 20484428 3` UTR ZnT77C - chr3L_25_20480001 chr3L_20480001 RAL-223 2389 chr3L 20525228 20525228 chr3L 22908066 22908066 4 2382838 29.0 35.0 32.0 0.1 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-223 2390 chr3L 20525229 20525229 chr3L 22908066 22908067 4 2382837 28.5 35.0 31.8 0.1 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-223 2391 chr3L 20590022 20590056 chr3L 20590606 20590645 412 17 588 13.0 6.0 9.5 1.6 623 chr3L 20590022 intergenic not near genes chr3L 20590334 intergenic not near genes chr3L 20590645 intergenic not near genes chr3L_17_20590001 chr3L_20590001 RAL-223 2392 chr3L 20590058 20590090 chr3L 20590601 20590679 412 9 582 8.0 5.5 6.8 1.2 621 chr3L 20590058 intergenic not near genes chr3L 20590368 intergenic not near genes chr3L 20590679 intergenic not near genes chr3L_9_20590001 chr3L_20590001 RAL-223 2393 chr3L 20699861 20699870 chr3L 20699987 20700000 5 129 19.5 6.0 12.8 0.4 139 chr3L 20699861 intergenic not near genes chr3L 20699930 intergenic not near genes chr3L 20700000 intergenic not near genes chr3L_5_20695001 chr3L_20695001 RAL-223 2394 chr3L 20699873 20699929 chr3L 20699980 20700059 26 126 7.0 8.0 7.5 3.1 186 chr3L 20699873 intergenic not near genes chr3L 20699966 intergenic not near genes chr3L 20700059 intergenic not near genes chr3L_26_20695001 chr3L_20695001 RAL-223 2395 chr3L 20710715 20710782 chr3L 20710842 20710909 24 126 7.5 9.0 8.2 2.6 194 chr3L 20710715 intergenic not near genes chr3L 20710812 intergenic not near genes chr3L 20710909 intergenic not near genes chr3L_24_20710001 chr3L_20710001 RAL-223 2396 chr3L 20858027 20858096 chr3L 20858176 20858245 18 149 7.0 7.5 7.2 2.2 218 chr3L 20858027 intron CG32432 - chr3L 20858136 intron CG32432 - chr3L 20858245 intron CG32432 - chr3L_18_20855001 chr3L_20855001 RAL-223 2397 chr3L 20898989 20899033 chr3L 20899130 20899174 16 140 7.0 13.0 10.0 1.5 185 chr3L 20898989 intergenic CG43931 + chr3L 20899082 intergenic not near genes chr3L 20899174 intergenic not near genes chr3L_16_20895001 chr3L_20895001 RAL-223 2398 chr3L 20928692 20928767 chr3L 20929142 20929217 37 449 9.5 2.5 6.0 5.3 525 chr3L 20928692 intron,exon fng -,CG10589 + chr3L 20928954 intron,exon fng -,CG10589 + chr3L 20929217 intron fng - chr3L_37_20925001 chr3L_20925001 RAL-223 2399 chr3L 21010322 21010395 chr3L 21010479 21010553 33 155 8.0 4.0 6.0 4.7 231 chr3L 21010322 intron skd - chr3L 21010438 intron skd - chr3L 21010553 intron skd - chr3L_33_21010001 chr3L_21010001 RAL-223 2400 chr3L 21014894 21014942 chr3L 21023399 21023462 Tirant 19 8523 6.5 8.5 7.5 2.2 8568 chr3L 21014894 intron skd - chr3L 21019178 intron skd - chr3L 21023462 intron skd - chr3L_19_21015001 chr3L_21015001 RAL-223 2401 chr3L 21040316 21040368 chr3L 21040820 21040872 26 504 4.5 11.0 7.8 3.0 556 chr3L 21040316 intron siz + chr3L 21040594 intron siz + chr3L 21040872 intron siz + chr3L_26_21040001 chr3L_21040001 RAL-223 2402 chr3L 21082163 21082236 chr3L 21082289 21082364 25 127 3.5 11.0 7.2 3.0 201 chr3L 21082163 intron ko - chr3L 21082264 intron ko - chr3L 21082364 intron ko - chr3L_25_21080001 chr3L_21080001 RAL-223 2403 chr3L 21151826 21151880 chr3L 21156960 21157014 flea 18 5134 15.5 10.0 12.8 1.3 5188 chr3L 21151826 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21157014 intron Ac78C - chr3L_18_21150001 chr3L_21150001 RAL-223 2404 chr3L 21172807 21172865 chr3L 21172960 21173018 21 150 9.0 13.5 11.2 1.7 211 chr3L 21172807 intergenic chb +,asparagine-synthetase + chr3L 21172912 5` UTR chb + chr3L 21173018 5` UTR chb + chr3L_21_21170001 chr3L_21170001 RAL-223 2405 chr3L 21211828 21211850 chr3L 21211970 21211992 8 142 15.0 8.5 11.8 0.6 164 chr3L 21211828 intron CG10508 + chr3L 21211910 intron CG10508 + chr3L 21211992 intron CG10508 + chr3L_8_21210001 chr3L_21210001 RAL-223 2406 chr3L 21243736 21243764 chr3L 21251311 21251326 412 5 7573 5.5 11.5 8.5 0.5 7590 chr3L 21243736 intron Eip78C + chr3L 21247531 intron Eip78C + chr3L 21251326 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-223 2407 chr3L 21274168 21274230 chr3L 21274389 21274451 21 221 5.5 10.0 7.8 2.4 283 chr3L 21274168 intron AcCoAS - chr3L 21274310 intron AcCoAS - chr3L 21274451 intron AcCoAS - chr3L_21_21270001 chr3L_21270001 RAL-223 2408 chr3L 21306106 21306171 chr3L 21315315 21315380 roo 18 9208 6.5 7.0 6.8 2.3 9274 chr3L 21306106 3` UTR CG7632 + chr3L 21310743 intron Pc - chr3L 21315380 3` UTR Pc - chr3L_18_21310001 chr3L_21310001 RAL-223 2409 chr3L 21389988 21389996 chr3L 21390149 21390157 8 161 28.0 4.0 16.0 0.5 169 chr3L 21389988 intron rgn + chr3L 21390072 intron rgn + chr3L 21390157 intron rgn + chr3L_8_21390001 chr3L_21390001 RAL-223 2410 chr3L 21406952 21407025 chr3L 21407081 21407112 27 125 10.5 9.0 9.8 2.5 160 chr3L 21406952 intron rgn + chr3L 21407032 intron rgn + chr3L 21407112 intron rgn + chr3L_27_21405001 chr3L_21405001 RAL-223 2411 chr3L 21414485 21414544 chr3L 21414611 21414670 26 126 5.5 12.0 8.8 2.7 185 chr3L 21414485 intron rgn + chr3L 21414578 intron rgn + chr3L 21414670 intron rgn + chr3L_26_21410001 chr3L_21410001 RAL-223 2412 chr3L 21498826 21498861 chr3L 21500512 21500547 1360 13 1685 5.5 19.5 12.5 1.0 1721 chr3L 21498826 5` UTR,intron CR43933 +,Glg1 - chr3L 21499686 intron Glg1 - chr3L 21500547 intron Glg1 - chr3L_13_21495001 chr3L_21495001 RAL-223 2413 chr3L 21597048 21597118 chr3L 21597201 21597272 27 154 12.5 7.5 10.0 2.5 224 chr3L 21597048 intron TfAP-2 + chr3L 21597160 intron TfAP-2 + chr3L 21597272 intron TfAP-2 + chr3L_27_21595001 chr3L_21595001 RAL-223 2414 chr3L 21639149 21639222 chr3L 21639278 21639351 38 128 13.0 11.0 12.0 2.9 202 chr3L 21639149 intergenic CG32444 +,CG32445 + chr3L 21639250 intergenic CG32445 +,CG32444 + chr3L 21639351 intergenic CG32445 +,CG32444 + chr3L_38_21635001 chr3L_21635001 RAL-223 2415 chr3L 21749276 21749333 chr3L 21754481 21754543 Doc 19 5208 8.5 8.0 8.2 2.1 5267 chr3L 21749276 intron Syn1 - chr3L 21751910 intron Syn1 - chr3L 21754543 intron Syn1 - chr3L_19_21750001 chr3L_21750001 RAL-223 2416 chr3L 21766881 21766910 chr3L 21767212 21767240 13 331 16.0 13.0 14.5 0.8 359 chr3L 21766881 intron Syn1 - chr3L 21767060 intron Syn1 - chr3L 21767240 intron Syn1 - chr3L_13_21765001 chr3L_21765001 RAL-223 2417 chr3L 21766912 21766950 chr3L 21767206 21767281 17 329 8.0 12.0 10.0 1.5 369 chr3L 21766912 intron Syn1 - chr3L 21767096 intron Syn1 - chr3L 21767281 intron Syn1 - chr3L_17_21765001 chr3L_21765001 RAL-223 2418 chr3L 21770000 21770040 chr3L 21770128 21770177 16 133 9.5 13.5 11.5 1.3 177 chr3L 21770000 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770088 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770177 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L_16_21770001 chr3L_21770001 RAL-223 2419 chr3L 21776633 21776684 chr3L 21776766 21776821 6 135 0.0 7.0 3.5 1.3 188 chr3L 21776633 intron,intron CG42689 +,CG42552 + chr3L 21776727 intron,intron CG42689 +,CG42552 + chr3L 21776821 intron,intron CG42689 +,CG42552 + chr3L_6_21775001 chr3L_21775001 RAL-223 2420 chr3L 21788686 21788752 chr3L 21789007 21789073 19 321 48.0 43.0 45.5 0.4 387 chr3L 21788686 intergenic not near genes chr3L 21788880 intergenic not near genes chr3L 21789073 intergenic not near genes chr3L_19_21785001 chr3L_21785001 RAL-223 2421 chr3L 21809939 21809961 chr3L 21810067 21810106 13 141 13.5 10.5 12.0 1.0 167 chr3L 21809939 intron eg + chr3L 21810022 intron eg + chr3L 21810106 intron eg + chr3L_13_21810001 chr3L_21810001 RAL-223 2422 chr3L 21852212 21852283 chr3L 21852355 21852426 33 133 7.0 9.5 8.2 3.6 214 chr3L 21852212 intron mub + chr3L 21852319 intron mub + chr3L 21852426 intron mub + chr3L_33_21850001 chr3L_21850001 RAL-223 2423 chr3L 21886349 21886416 chr3L 21886482 21886549 31 133 7.0 1.5 4.2 6.0 200 chr3L 21886349 intron,intron mub +,CR43878 - chr3L 21886449 intron,intron mub +,CR43878 - chr3L 21886549 intron,intron mub +,CR43878 - chr3L_31_21885001 chr3L_21885001 RAL-223 2424 chr3L 21950285 21950357 chr3L 21950412 21950484 29 126 10.5 6.5 8.5 3.1 199 chr3L 21950285 exon CG7448 + chr3L 21950384 exon CG7448 + chr3L 21950484 exon CG7448 + chr3L_29_21950001 chr3L_21950001 RAL-223 2425 chr3L 21975631 21975705 chr3L 21975915 21975989 23 283 6.0 10.0 8.0 2.6 358 chr3L 21975631 intron CG7470 + chr3L 21975810 intron CG7470 + chr3L 21975989 intron CG7470 + chr3L_23_21975001 chr3L_21975001 RAL-223 2426 chr3L 21994396 21994458 chr3L 21994527 21994589 23 131 10.0 8.0 9.0 2.3 193 chr3L 21994396 intergenic not near genes chr3L 21994492 intergenic not near genes chr3L 21994589 intergenic not near genes chr3L_23_21990001 chr3L_21990001 RAL-223 2427 chr3L 22008805 22008814 chr3L 22008932 22008941 5 127 21.5 8.5 15.0 0.3 136 chr3L 22008805 intergenic not near genes chr3L 22008873 intergenic not near genes chr3L 22008941 intergenic not near genes chr3L_5_22005001 chr3L_22005001 RAL-223 2428 chr3L 22008815 22008876 chr3L 22008925 22009003 23 125 10.5 8.5 9.5 2.2 188 chr3L 22008815 intergenic not near genes chr3L 22008909 intergenic not near genes chr3L 22009003 intergenic not near genes chr3L_23_22005001 chr3L_22005001 RAL-223 2429 chr3L 22099632 22099694 chr3L 22105868 22105930 3S18 21 6236 8.5 10.0 9.2 2.1 6298 chr3L 22099632 intergenic not near genes chr3L 22102781 intergenic not near genes chr3L 22105930 intergenic not near genes chr3L_21_22100001 chr3L_22100001 RAL-223 2430 chr3L 22130450 22130520 chr3L 22130646 22130716 24 196 7.5 11.5 9.5 2.3 266 chr3L 22130450 intergenic not near genes chr3L 22130583 intergenic not near genes chr3L 22130716 intergenic not near genes chr3L_24_22130001 chr3L_22130001 RAL-223 2431 chr3L 22169409 22169482 chr3L 22169552 22169625 26 143 7.0 10.0 8.5 2.7 216 chr3L 22169409 intron olf413 + chr3L 22169517 intron olf413 + chr3L 22169625 intron olf413 + chr3L_26_22165001 chr3L_22165001 RAL-223 2432 chr3L 22271095 22271144 chr3L 22271272 22271321 25 177 5.0 14.0 9.5 2.4 226 chr3L 22271095 intron Csp + chr3L 22271208 intron Csp + chr3L 22271321 intron Csp + chr3L_25_22270001 chr3L_22270001 RAL-223 2433 chr3L 22275603 22275672 chr3L 22275848 22275917 37 245 7.5 13.0 10.2 3.3 314 chr3L 22275603 intron srpk79D + chr3L 22275760 intron srpk79D + chr3L 22275917 intron srpk79D + chr3L_37_22275001 chr3L_22275001 RAL-223 2434 chr3L 22314836 22314906 chr3L 22315100 22315170 31 264 8.5 5.5 7.0 3.9 334 chr3L 22314836 intron Ten-m - chr3L 22315003 intron Ten-m - chr3L 22315170 intron Ten-m - chr3L_31_22315001 chr3L_22315001 RAL-223 2435 chr3L 22328601 22328660 chr3L 22328741 22328821 33 159 7.0 8.0 7.5 3.9 220 chr3L 22328601 intron Ten-m - chr3L 22328711 intron Ten-m - chr3L 22328821 intron Ten-m - chr3L_33_22325001 chr3L_22325001 RAL-223 2436 chr3L 22338973 22339050 chr3L 22339475 22339541 23 500 9.0 12.0 10.5 2.0 568 chr3L 22338973 intron Ten-m - chr3L 22339257 intron Ten-m - chr3L 22339541 intron Ten-m - chr3L_23_22335001 chr3L_22335001 RAL-223 2437 chr3L 22447155 22447221 chr3L 22447294 22447362 25 141 9.0 8.5 8.8 2.6 207 chr3L 22447155 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447362 intergenic not near genes chr3L_25_22445001 chr3L_22445001 RAL-223 2438 chr3L 22450231 22450292 chr3L 22450370 22450436 20 145 6.5 7.5 7.0 2.5 205 chr3L 22450231 intergenic not near genes chr3L 22450334 intergenic not near genes chr3L 22450436 intergenic not near genes chr3L_20_22450001 chr3L_22450001 RAL-223 2439 chr3L 22477026 22477081 chr3L 22477167 22477222 21 140 0.5 11.5 6.0 3.0 196 chr3L 22477026 intergenic not near genes chr3L 22477124 intergenic not near genes chr3L 22477222 intergenic not near genes chr3L_21_22475001 chr3L_22475001 RAL-223 2440 chr3L 22512965 22513037 chr3L 22513102 22513174 30 137 6.0 6.5 6.2 4.2 209 chr3L 22512965 intergenic not near genes chr3L 22513070 intergenic not near genes chr3L 22513174 intergenic not near genes chr3L_30_22510001 chr3L_22510001 RAL-223 2441 chr3L 22514720 22514768 chr3L 22514937 22514985 24 217 14.0 6.0 10.0 2.2 265 chr3L 22514720 intergenic not near genes chr3L 22514852 intergenic not near genes chr3L 22514985 intergenic not near genes chr3L_24_22510001 chr3L_22510001 RAL-223 2442 chr3L 22514774 22514781 chr3L 22514936 22514981 6 205 12.0 5.5 8.8 0.6 207 chr3L 22514774 intergenic not near genes chr3L 22514878 intergenic not near genes chr3L 22514981 intergenic not near genes chr3L_6_22510001 chr3L_22510001 RAL-223 2443 chr3L 22554610 22554678 chr3L 22554885 22554953 27 275 8.0 8.0 8.0 3.0 343 chr3L 22554610 intergenic not near genes chr3L 22554782 intergenic not near genes chr3L 22554953 intergenic not near genes chr3L_27_22550001 chr3L_22550001 RAL-223 2444 chr3L 22555723 22555792 chr3L 22563243 22563312 blood 32 7519 6.5 5.0 5.8 4.7 7589 chr3L 22555723 intergenic not near genes chr3L 22559518 intergenic not near genes chr3L 22563312 intergenic not near genes chr3L_32_22555001 chr3L_22555001 RAL-223 2445 chr3L 22577584 22577630 chr3L 22582422 22582468 Doc 14 4837 7.5 11.5 9.5 1.3 4884 chr3L 22577584 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582468 3` UTR CG14459 - chr3L_14_22580001 chr3L_22580001 RAL-223 2446 chr3L 22577632 22577645 chr3L 22582408 22582458 Doc 6 4819 5.5 8.5 7.0 0.8 4826 chr3L 22577632 intergenic not near genes chr3L 22580045 intergenic not near genes chr3L 22582458 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-223 2447 chr3L 22617144 22617218 chr3L 22624646 22624720 blood 39 7502 8.0 5.5 6.8 5.0 7576 chr3L 22617144 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624720 intron CG14459 - chr3L_39_22620001 chr3L_22620001 RAL-223 2448 chr3L 22639846 22639916 chr3L 22640054 22640124 36 208 76.0 75.5 75.8 0.5 278 chr3L 22639846 intergenic not near genes chr3L 22639985 intergenic not near genes chr3L 22640124 intergenic not near genes chr3L_36_22635001 chr3L_22635001 RAL-223 2449 chr3L 22678034 22678104 chr3L 22678177 22678230 33 142 10.5 13.5 12.0 2.5 196 chr3L 22678034 intron CG14457 + chr3L 22678132 intron CG14457 + chr3L 22678230 intron CG14457 + chr3L_33_22675001 chr3L_22675001 RAL-223 2450 chr3L 22732428 22732488 chr3L 22732559 22732619 36 131 13.0 12.5 12.8 2.6 191 chr3L 22732428 intron CG11367 + chr3L 22732524 intron CG11367 + chr3L 22732619 exon CG11367 + chr3L_36_22730001 chr3L_22730001 RAL-223 2451 chr3L 22761345 22761403 chr3L 22766824 22766887 Ivk 22 5484 11.0 11.0 11.0 1.8 5542 chr3L 22761345 intron SPoCk + chr3L 22764116 intron SPoCk + chr3L 22766887 intron SPoCk + chr3L_22_22760001 chr3L_22760001 RAL-223 2452 chr3L 22833228 22833267 chr3L 22833357 22833396 16 129 15.0 16.5 15.8 1.0 168 chr3L 22833228 5` UTR jim - chr3L 22833312 5` UTR jim - chr3L 22833396 5` UTR jim - chr3L_16_22830001 chr3L_22830001 RAL-223 2453 chr3L 22848715 22848789 chr3L 22848930 22849004 21 215 9.5 6.0 7.8 2.4 289 chr3L 22848715 intergenic not near genes chr3L 22848860 intergenic not near genes chr3L 22849004 intergenic not near genes chr3L_21_22845001 chr3L_22845001 RAL-223 2454 chr3L 22849407 22849434 chr3L 22849542 22849569 12 134 10.5 13.5 12.0 0.9 162 chr3L 22849407 intergenic not near genes chr3L 22849488 intergenic not near genes chr3L 22849569 intergenic not near genes chr3L_12_22845001 chr3L_22845001 RAL-223 2455 chr3L 22865944 22866009 chr3L 22867127 22867192 Doc 34 1182 9.5 11.0 10.2 3.0 1248 chr3L 22865944 exon CG33170 + chr3L 22866568 intron CG33170 + chr3L 22867192 intron CG33170 + chr3L_34_22865001 chr3L_22865001 RAL-223 2456 chr3L 22897175 22897191 chr3L 22897308 22897324 8 133 1.5 12.5 7.0 1.0 149 chr3L 22897175 intergenic not near genes chr3L 22897250 intergenic not near genes chr3L 22897324 intergenic not near genes chr3L_8_22895001 chr3L_22895001 RAL-223 2457 chr3L 22897192 22897214 chr3L 22897300 22897347 11 126 0.0 11.0 5.5 1.7 155 chr3L 22897192 intergenic not near genes chr3L 22897270 intergenic not near genes chr3L 22897347 intergenic not near genes chr3L_11_22895001 chr3L_22895001 RAL-223 2458 chr3L 9410424 9410424 chr3L 22908066 22908066 4 13497642 34.0 35.0 34.5 0.1 13497642 chr3L 9410424 intron CG4022 - chr3L 16159245 intron CG5151 - chr3L 22908066 intergenic not near genes chr3L_4_16155001 chr3L_16155001 RAL-223 2459 chr3L 19220633 19220637 chr3L 22908066 22908066 31 3687432 42.0 35.0 38.5 0.8 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_31_21060001 chr3L_21060001 RAL-223 2460 chr3L 20525227 20525230 chr3L 22908066 22908066 16 2382837 28.5 35.0 31.8 0.5 2382839 chr3L 20525227 intron CG4825 - chr3L 21716646 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_16_21715001 chr3L_21715001 RAL-223 2461 chr3L 22908066 22908066 chr3L 24821492 24821494 17 1913428 38.5 23.0 30.8 0.5 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_17_23860001 chr3L_23860001 RAL-223 2462 chr3L 19220633 19220637 chr3L 22908067 22908067 24 3687433 42.0 35.5 38.8 0.6 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_24_21060001 chr3L_21060001 RAL-223 2463 chr3L 20525228 20525230 chr3L 22908067 22908067 7 2382838 28.5 35.5 32.0 0.2 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_7_21715001 chr3L_21715001 RAL-223 2464 chr3L 22908067 22908067 chr3L 24821492 24821496 9 1913427 38.0 23.0 30.5 0.3 1913429 chr3L 22908067 intergenic not near genes chr3L 23864782 intron CG40470 - chr3L 24821496 intergenic not near genes chr3L_9_23860001 chr3L_23860001 RAL-223 2465 chr3L 22949148 22949222 chr3L 22949286 22949360 28 138 10.5 6.0 8.2 3.0 212 chr3L 22949148 intron Mes2 + chr3L 22949254 intron Mes2 + chr3L 22949360 intron Mes2 + chr3L_28_22945001 chr3L_22945001 RAL-223 2466 chr3L 22956368 22956380 chr3L 22956541 22956553 4 173 12.0 18.0 15.0 0.2 185 chr3L 22956368 intergenic not near genes chr3L 22956460 intergenic not near genes chr3L 22956553 intergenic not near genes chr3L_4_22955001 chr3L_22955001 RAL-223 2467 chr3L 22966376 22966420 chr3L 22966650 22966694 16 273 16.0 7.0 11.5 1.3 318 chr3L 22966376 intergenic not near genes chr3L 22966535 intergenic not near genes chr3L 22966694 intergenic not near genes chr3L_16_22965001 chr3L_22965001 RAL-223 2468 chr3L 22966426 22966445 chr3L 22966645 22966719 9 262 12.0 6.5 9.2 0.9 293 chr3L 22966426 intergenic not near genes chr3L 22966572 intergenic not near genes chr3L 22966719 intergenic not near genes chr3L_9_22965001 chr3L_22965001 RAL-223 2469 chr3L 22989822 22989887 chr3L 22996846 22996905 297 24 7024 11.0 8.5 9.8 2.2 7083 chr3L 22989822 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996905 intergenic not near genes chr3L_24_22990001 chr3L_22990001 RAL-223 2470 chr3L 23042176 23042249 chr3L 23048979 23049052 gypsy6 27 6802 9.5 9.5 9.5 2.6 6876 chr3L 23042176 intergenic not near genes chr3L 23045614 intergenic not near genes chr3L 23049052 intergenic not near genes chr3L_27_23045001 chr3L_23045001 RAL-223 2471 chr3L 23088237 23088315 chr3L 23088369 23088447 23 131 4.5 5.5 5.0 3.8 210 chr3L 23088237 intergenic not near genes chr3L 23088342 intergenic not near genes chr3L 23088447 intergenic not near genes chr3L_23_23085001 chr3L_23085001 RAL-223 2472 chr3L 23165871 23165904 chr3L 23173367 23173400 Quasimodo 10 7494 15.5 10.5 13.0 0.7 7529 chr3L 23165871 intergenic not near genes chr3L 23169636 intergenic not near genes chr3L 23173400 intergenic not near genes chr3L_10_23165001 chr3L_23165001 RAL-223 2473 chr3L 23182771 23182844 chr3L 23182897 23182970 24 125 13.5 11.5 12.5 1.8 199 chr3L 23182771 intron CG34031 + chr3L 23182870 intron CG34031 + chr3L 23182970 intron CG34031 + chr3L_24_23180001 chr3L_23180001 RAL-223 2474 chr3L 23285582 23285654 chr3L 23286311 23286379 31 729 4.5 8.0 6.2 4.3 797 chr3L 23285582 3` UTR nAChRalpha4 + chr3L 23285980 3` UTR nAChRalpha4 + chr3L 23286379 3` UTR nAChRalpha4 + chr3L_31_23285001 chr3L_23285001 RAL-223 2475 chr3L 23288225 23288254 chr3L 23288954 23288983 INE-1 12 729 18.5 12.0 15.2 0.7 758 chr3L 23288225 intergenic not near genes chr3L 23288604 intergenic not near genes chr3L 23288983 intergenic not near genes chr3L_12_23285001 chr3L_23285001 RAL-223 2476 chr3L 23288259 23288298 chr3L 23288988 23289027 INE-1 18 728 7.0 25.5 16.2 1.0 768 chr3L 23288259 intergenic not near genes chr3L 23288643 intergenic not near genes chr3L 23289027 intergenic not near genes chr3L_18_23285001 chr3L_23285001 RAL-223 2477 chr3L 23450058 23450123 chr3L 23450610 23450675 26 552 8.5 7.5 8.0 2.9 617 chr3L 23450058 intergenic not near genes chr3L 23450366 intergenic not near genes chr3L 23450675 intergenic not near genes chr3L_26_23450001 chr3L_23450001 RAL-223 2478 chr3L 23459760 23459762 chr3L 26026743 26026751 Cr1a 4 2566986 19.0 25.5 22.2 0.2 2566991 chr3L 23459760 intergenic not near genes chr3L 24743256 intron scro + chr3L 26026751 intergenic not near genes chr3L_4_24740001 chr3L_24740001 RAL-223 2479 chr3L 23772890 23772899 chr3L 23773026 23773035 6 136 21.5 17.0 19.2 0.3 145 chr3L 23772890 intergenic not near genes chr3L 23772962 intergenic not near genes chr3L 23773035 intergenic not near genes chr3L_6_23770001 chr3L_23770001 RAL-223 2480 chr3L 23823976 23824014 chr3L 23824439 23824477 12 463 10.0 7.0 8.5 1.3 501 chr3L 23823976 intergenic not near genes chr3L 23824226 intergenic not near genes chr3L 23824477 intergenic not near genes chr3L_12_23820001 chr3L_23820001 RAL-223 2481 chr3L 23875482 23875549 chr3L 23875613 23875671 19 129 9.0 10.5 9.8 1.8 189 chr3L 23875482 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875671 intron CG40470 - chr3L_19_23875001 chr3L_23875001 RAL-223 2482 chr3L 24008515 24008589 chr3L 24008797 24008871 32 282 6.0 6.0 6.0 4.6 356 chr3L 24008515 intergenic not near genes chr3L 24008693 intergenic not near genes chr3L 24008871 intergenic not near genes chr3L_32_24005001 chr3L_24005001 RAL-223 2483 chr3L 24012378 24012429 chr3L 24020769 24020820 roo 16 8391 8.0 9.5 8.8 1.6 8442 chr3L 24012378 intergenic not near genes chr3L 24016599 intergenic not near genes chr3L 24020820 intergenic not near genes chr3L_16_24015001 chr3L_24015001 RAL-223 2484 chr3L 24168759 24168806 chr3L 24176121 24176184 ZAM 12 7369 10.0 6.0 8.0 1.3 7425 chr3L 24168759 intron Snap25 + chr3L 24172472 intron Snap25 + chr3L 24176184 intron Snap25 + chr3L_12_24170001 chr3L_24170001 RAL-223 2485 chr3L 24233762 24233797 chr3L 24233890 24233925 13 128 6.0 11.0 8.5 1.4 163 chr3L 24233762 intron Snap25 + chr3L 24233844 intron Snap25 + chr3L 24233925 intron Snap25 + chr3L_13_24230001 chr3L_24230001 RAL-223 2486 chr3L 24791854 24791886 chr3L 24796683 24796715 Doc 7 4829 9.0 3.5 6.2 1.0 4861 chr3L 24791854 intergenic not near genes chr3L 24794284 intergenic not near genes chr3L 24796715 intergenic not near genes chr3L_7_24790001 chr3L_24790001 RAL-223 2487 chr3L 18198930 18198931 chr3L 24821492 24821492 4 6622562 1.5 23.0 12.2 0.3 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-223 2488 chr3L 18198931 18198931 chr3L 24821493 24821493 7 6622562 1.5 23.0 12.2 0.5 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_7_21510001 chr3L_21510001 RAL-223 2489 chr3L 22908066 22908066 chr3L 24821494 24821494 4 1913428 38.5 22.5 30.5 0.1 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-223 2490 chr3L 25190037 25190094 chr3L 25191237 25191294 1360 4 1200 30.5 35.0 32.8 0.1 1257 chr3L 25190037 intergenic not near genes chr3L 25190666 intergenic not near genes chr3L 25191294 intergenic not near genes chr3L_4_25190001 chr3L_25190001 RAL-223 2491 chr3L 25331601 25331652 chr3L 25331730 25331782 12 134 5.0 9.0 7.0 1.5 181 chr3L 25331601 intergenic not near genes chr3L 25331692 intergenic not near genes chr3L 25331782 intergenic not near genes chr3L_12_25330001 chr3L_25330001 RAL-223 2492 chr3L 23289007 23289073 chr3L 25843638 25843704 30 2554631 69.5 40.0 54.8 0.5 2554697 chr3L 23289007 intergenic not near genes chr3L 24566356 intergenic not near genes chr3L 25843704 intron CG40178 - chr3L_30_24565001 chr3L_24565001 RAL-223 2493 chr3L 25975462 25975476 chr3L 25975597 25975611 4 135 3.5 20.5 12.0 0.3 149 chr3L 25975462 intron CG40178 - chr3L 25975536 intron CG40178 - chr3L 25975611 intron CG40178 - chr3L_4_25975001 chr3L_25975001 RAL-223 2494 chr3L 26008726 26008794 chr3L 26008923 26008991 24 195 5.5 5.0 5.2 3.9 265 chr3L 26008726 intron CG40178 - chr3L 26008858 intron CG40178 - chr3L 26008991 intron CG40178 - chr3L_24_26005001 chr3L_26005001 RAL-223 2495 chr3L 23611203 23611210 chr3L 27363457 27363464 Gypsy12A_LTR 4 3752254 21.5 36.5 29.0 0.1 3752261 chr3L 23611203 intron AGO3 + chr3L 25487334 intron CG41343 - chr3L 27363464 intron Dbp80 + chr3L_4_25485001 chr3L_25485001 RAL-223 2496 chr3L 27365349 27365398 chr3L 27365713 27365762 11 364 12.0 6.0 9.0 1.1 413 chr3L 27365349 intron Dbp80 + chr3L 27365556 intron Dbp80 + chr3L 27365762 intron Dbp80 + chr3L_11_27365001 chr3L_27365001 RAL-223 2497 chr3L 27390639 27390710 chr3L 27390768 27390839 18 127 45.0 44.5 44.8 0.4 200 chr3L 27390639 intron Dbp80 + chr3L 27390739 intron Dbp80 + chr3L 27390839 intron Dbp80 + chr3L_18_27390001 chr3L_27390001 RAL-223 2498 chr3R 1867057 1867063 chr3R 1954889 1954890 Doc3-element 4 87831 22.0 3.5 12.8 0.3 87833 chr3R 1867057 intron CG42623 + chr3R 1910974 intron CG42623 + chr3R 1954890 intergenic not near genes chr3R_4_1910001 chr3R_1910001 RAL-223 2499 chr3R 1938338 1938362 chr3R 1938470 1938494 4 132 1.5 12.5 7.0 0.5 156 chr3R 1938338 intergenic CG42623 + chr3R 1938416 intergenic CG42623 + chr3R 1938494 intergenic CG42623 + chr3R_4_1935001 chr3R_1935001 RAL-223 2500 chr3R 2446807 2446823 chr3R 2449006 2449022 1360 7 2200 91.0 81.0 86.0 0.1 2215 chr3R 2446807 intergenic not near genes chr3R 2447914 intergenic not near genes chr3R 2449022 intergenic not near genes chr3R_7_2445001 chr3R_2445001 RAL-223 2501 chr3R 2446803 2446851 chr3R 2449024 2449050 1360 5 2203 86.5 77.0 81.8 0.1 2247 chr3R 2446803 intergenic not near genes chr3R 2447926 intergenic not near genes chr3R 2449050 intergenic not near genes chr3R_5_2445001 chr3R_2445001 RAL-223 2502 chr3R 2534090 2534154 chr3R 2541709 2541773 11 7619 31.0 26.5 28.8 0.4 7683 chr3R 2534090 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541773 intergenic not near genes chr3R_11_2535001 chr3R_2535001 RAL-223 2503 chr3R 2556886 2556956 chr3R 2557569 2557639 27 683 36.0 31.0 33.5 0.8 753 chr3R 2556886 intron CG41056 - chr3R 2557262 intron CG41056 - chr3R 2557639 intron CG41056 - chr3R_27_2555001 chr3R_2555001 RAL-223 2504 chr3R 4063761 4063795 chr3R 4069091 4069104 5 5325 8.0 28.0 18.0 0.3 5343 chr3R 4063761 intergenic not near genes chr3R 4066432 intergenic not near genes chr3R 4069104 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-223 2505 chr3R 4104997 4105055 chr3R 4110251 4110309 copia 11 5254 6.0 8.5 7.2 1.3 5312 chr3R 4104997 intergenic not near genes chr3R 4107653 intergenic not near genes chr3R 4110309 intergenic not near genes chr3R_11_4105001 chr3R_4105001 RAL-223 2506 chr3R 4132853 4132926 chr3R 4133057 4133130 17 204 4.5 5.0 4.8 2.9 277 chr3R 4132853 intron Gfat1 + chr3R 4132992 intron Gfat1 + chr3R 4133130 intron Gfat1 + chr3R_17_4130001 chr3R_4130001 RAL-223 2507 chr3R 4161498 4161566 chr3R 4161625 4161693 18 127 7.0 3.5 5.2 2.9 195 chr3R 4161498 3` UTR CG40198 - chr3R 4161596 exon CG40198 - chr3R 4161693 exon CG40198 - chr3R_18_4160001 chr3R_4160001 RAL-223 2508 chr3R 4206026 4206041 chr3R 4211651 4211666 mdg3 8 5625 21.0 6.5 13.8 0.5 5640 chr3R 4206026 intron CG14636 - chr3R 4208846 intron CG14636 - chr3R 4211666 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-223 2509 chr3R 4206056 4206094 chr3R 4211681 4211718 mdg3 12 5625 10.0 10.5 10.2 1.1 5662 chr3R 4206056 intron CG14636 - chr3R 4208887 intron CG14636 - chr3R 4211718 intron CG14636 - chr3R_12_4205001 chr3R_4205001 RAL-223 2510 chr3R 4366717 4366780 chr3R 4375150 4375213 roo 25 8433 11.5 7.5 9.5 2.4 8496 chr3R 4366717 3` UTR CG1090 + chr3R 4370965 intergenic not near genes chr3R 4375213 5` UTR CR44922 + chr3R_25_4370001 chr3R_4370001 RAL-223 2511 chr3R 4408371 4408434 chr3R 4412725 4412774 Juan 18 4353 10.5 11.0 10.8 1.5 4403 chr3R 4408371 intron CG32944 - chr3R 4410572 intron CG32944 - chr3R 4412774 intron CG32944 - chr3R_18_4410001 chr3R_4410001 RAL-223 2512 chr3R 4609509 4609571 chr3R 4610723 4610785 1360 24 1214 14.5 10.5 12.5 1.8 1276 chr3R 4609509 intergenic not near genes chr3R 4610147 intergenic not near genes chr3R 4610785 intergenic not near genes chr3R_24_4610001 chr3R_4610001 RAL-223 2513 chr3R 4661443 4661458 chr3R 4661565 4661580 6 126 18.0 2.5 10.2 0.5 137 chr3R 4661443 intron CG43427 + chr3R 4661512 intron CG43427 + chr3R 4661580 intron CG43427 + chr3R_6_4660001 chr3R_4660001 RAL-223 2514 chr3R 4683133 4683208 chr3R 4684942 4685017 S-element 28 1806 7.5 5.5 6.5 3.7 1884 chr3R 4683133 intron CG43427 + chr3R 4684075 intron CG43427 + chr3R 4685017 intron CG43427 + chr3R_28_4680001 chr3R_4680001 RAL-223 2515 chr3R 4753203 4753229 chr3R 4757556 4757582 F-element 10 4353 20.0 8.0 14.0 0.7 4379 chr3R 4753203 intron,intron atms +,CG44098 - chr3R 4755392 intron,intron atms +,CG44098 - chr3R 4757582 intron,exon atms +,CG44098 - chr3R_10_4755001 chr3R_4755001 RAL-223 2516 chr3R 4753231 4753260 chr3R 4757554 4757602 F-element 15 4350 13.0 7.5 10.2 1.3 4371 chr3R 4753231 intron,intron atms +,CG44098 - chr3R 4755416 intron,intron atms +,CG44098 - chr3R 4757602 intron,exon atms +,CG44098 - chr3R_15_4755001 chr3R_4755001 RAL-223 2517 chr3R 4769137 4769187 chr3R 4769243 4769315 16 126 5.0 8.0 6.5 2.1 178 chr3R 4769137 intron,intron atms +,CG44098 - chr3R 4769226 intron,intron atms +,CG44098 - chr3R 4769315 intron,intron atms +,CG44098 - chr3R_16_4765001 chr3R_4765001 RAL-223 2518 chr3R 4784519 4784578 chr3R 4791362 4791415 19 6829 48.0 53.0 50.5 0.4 6896 chr3R 4784519 exon CG17387 - chr3R 4787967 exon ctrip - chr3R 4791415 exon ctrip - chr3R_19_4785001 chr3R_4785001 RAL-223 2519 chr3R 4802066 4802100 chr3R 4802283 4802317 10 217 21.5 7.0 14.2 0.7 251 chr3R 4802066 intron ctrip - chr3R 4802192 intron ctrip - chr3R 4802317 intron ctrip - chr3R_10_4800001 chr3R_4800001 RAL-223 2520 chr3R 4887445 4887503 chr3R 4894872 4894919 rover 16 7426 6.5 14.0 10.2 1.4 7474 chr3R 4887445 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894919 intergenic not near genes chr3R_16_4890001 chr3R_4890001 RAL-223 2521 chr3R 4922292 4922363 chr3R 4922421 4922492 25 129 9.5 3.5 6.5 3.3 200 chr3R 4922292 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922492 intron Cdep + chr3R_25_4920001 chr3R_4920001 RAL-223 2522 chr3R 4948331 4948391 chr3R 4949003 4949063 20 672 36.5 16.5 26.5 0.7 732 chr3R 4948331 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948697 intergenic UbcD6 - chr3R 4949063 3` UTR UbcD6 - chr3R_20_4945001 chr3R_4945001 RAL-223 2523 chr3R 4965963 4966033 chr3R 4966105 4966174 23 141 1.5 7.5 4.5 4.2 211 chr3R 4965963 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966174 intron CG1124 + chr3R_23_4965001 chr3R_4965001 RAL-223 2524 chr3R 4981369 4981437 chr3R 4981498 4981548 22 121 8.0 10.0 9.0 2.2 179 chr3R 4981369 intergenic not near genes chr3R 4981458 intergenic not near genes chr3R 4981548 intergenic CG14662 - chr3R_22_4980001 chr3R_4980001 RAL-223 2525 chr3R 5045802 5045871 chr3R 5052954 5053023 HMS-Beagle 22 7152 9.5 5.0 7.2 2.7 7221 chr3R 5045802 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5053023 intergenic CR45588 - chr3R_22_5045001 chr3R_5045001 RAL-223 2526 chr3R 5067939 5067954 chr3R 5073506 5073521 mdg3 5 5567 25.0 10.0 17.5 0.3 5582 chr3R 5067939 intergenic not near genes chr3R 5070730 intergenic not near genes chr3R 5073521 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-223 2527 chr3R 5067956 5068006 chr3R 5073497 5073573 mdg3 16 5562 13.0 8.5 10.8 1.4 5617 chr3R 5067956 intergenic not near genes chr3R 5070764 intergenic not near genes chr3R 5073573 intergenic not near genes chr3R_16_5070001 chr3R_5070001 RAL-223 2528 chr3R 5191366 5191447 chr3R 5191597 5191673 45 227 58.0 60.5 59.2 0.7 307 chr3R 5191366 intron cno - chr3R 5191520 intron cno - chr3R 5191673 intron cno - chr3R_45_5190001 chr3R_5190001 RAL-223 2529 chr3R 5205094 5205135 chr3R 5205236 5205277 21 141 9.0 9.0 9.0 2.1 183 chr3R 5205094 intron cno - chr3R 5205186 intron cno - chr3R 5205277 intron cno - chr3R_21_5205001 chr3R_5205001 RAL-223 2530 chr3R 5278041 5278115 chr3R 5278172 5278246 40 131 14.5 12.5 13.5 2.8 205 chr3R 5278041 intron mtd - chr3R 5278144 intron mtd - chr3R 5278246 intron mtd - chr3R_40_5275001 chr3R_5275001 RAL-223 2531 chr3R 5282939 5282991 chr3R 5283072 5283124 24 129 10.0 18.0 14.0 1.6 185 chr3R 5282939 intron mtd - chr3R 5283032 intron mtd - chr3R 5283124 intron mtd - chr3R_24_5280001 chr3R_5280001 RAL-223 2532 chr3R 5338353 5338419 chr3R 5343580 5343605 Rt1c 22 5225 8.5 8.0 8.2 2.4 5252 chr3R 5338353 intron mtd - chr3R 5340979 intron mtd - chr3R 5343605 intron mtd - chr3R_22_5340001 chr3R_5340001 RAL-223 2533 chr3R 5365291 5365345 chr3R 5367009 5367063 NOF 29 1718 17.0 11.0 14.0 1.9 1772 chr3R 5365291 intron Cerk - chr3R 5366177 intron Cerk - chr3R 5367063 intron Cerk - chr3R_29_5365001 chr3R_5365001 RAL-223 2534 chr3R 5367100 5367170 chr3R 5367276 5367346 29 176 6.0 11.5 8.8 3.0 246 chr3R 5367100 intron Cerk - chr3R 5367223 intron Cerk - chr3R 5367346 intron Cerk - chr3R_29_5365001 chr3R_5365001 RAL-223 2535 chr3R 5385926 5386000 chr3R 5386147 5386216 31 220 6.5 10.0 8.2 3.4 290 chr3R 5385926 intron kkv - chr3R 5386071 intron kkv - chr3R 5386216 intron kkv - chr3R_31_5385001 chr3R_5385001 RAL-223 2536 chr3R 5438741 5438746 chr3R 5438960 5438965 4 219 20.5 8.0 14.2 0.3 224 chr3R 5438741 intron CG14669 + chr3R 5438853 intron CG14669 + chr3R 5438965 intron CG14669 + chr3R_4_5435001 chr3R_5435001 RAL-223 2537 chr3R 5438747 5438808 chr3R 5438956 5439027 27 219 9.5 6.5 8.0 3.0 280 chr3R 5438747 intron CG14669 + chr3R 5438887 intron CG14669 + chr3R 5439027 intron CG14669 + chr3R_27_5435001 chr3R_5435001 RAL-223 2538 chr3R 5445919 5445987 chr3R 5452429 5452497 Burdock 37 6510 7.5 8.5 8.0 4.1 6578 chr3R 5445919 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452497 intron CG14669 + chr3R_37_5445001 chr3R_5445001 RAL-223 2539 chr3R 5726048 5726118 chr3R 5726259 5726330 18 212 7.0 6.0 6.5 2.4 282 chr3R 5726048 intergenic not near genes chr3R 5726189 intergenic not near genes chr3R 5726330 intergenic not near genes chr3R_18_5725001 chr3R_5725001 RAL-223 2540 chr3R 5745970 5746035 chr3R 5746261 5746326 pogo 27 290 11.5 9.0 10.2 2.4 356 chr3R 5745970 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746326 3` UTR Madm + chr3R_27_5745001 chr3R_5745001 RAL-223 2541 chr3R 5746975 5747035 chr3R 5753216 5753276 diver 24 6241 10.0 7.5 8.8 2.4 6301 chr3R 5746975 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753276 intergenic CG2091 - chr3R_24_5750001 chr3R_5750001 RAL-223 2542 chr3R 5772327 5772398 chr3R 5772535 5772595 34 208 9.5 10.5 10.0 3.1 268 chr3R 5772327 intron CG2082 - chr3R 5772461 intron CG2082 - chr3R 5772595 intron CG2082 - chr3R_34_5770001 chr3R_5770001 RAL-223 2543 chr3R 5809067 5809137 chr3R 5809358 5809428 pogo 29 291 6.0 9.5 7.8 3.3 361 chr3R 5809067 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809428 3` UTR CG11000 + chr3R_29_5805001 chr3R_5805001 RAL-223 2544 chr3R 5822343 5822405 chr3R 5823560 5823622 1360 25 1217 7.0 11.5 9.2 2.5 1279 chr3R 5822343 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823622 3` UTR CG2023 - chr3R_25_5820001 chr3R_5820001 RAL-223 2545 chr3R 5836161 5836177 chr3R 5836315 5836331 7 154 18.0 15.0 16.5 0.4 170 chr3R 5836161 exon,3` UTR CG1208 +,CR45192 - chr3R 5836246 intron CG1208 + chr3R 5836331 intron CG1208 + chr3R_7_5835001 chr3R_5835001 RAL-223 2546 chr3R 5840777 5840849 chr3R 5840916 5840988 32 138 9.0 10.5 9.8 3.0 211 chr3R 5840777 intergenic CG1213 + chr3R 5840882 intergenic CG1213 + chr3R 5840988 intergenic CG1213 + chr3R_32_5840001 chr3R_5840001 RAL-223 2547 chr3R 5927525 5927581 chr3R 5927813 5927851 pogo 35 286 11.0 12.5 11.8 2.7 326 chr3R 5927525 intron CG34113 - chr3R 5927688 intron CG34113 - chr3R 5927851 intron CG34113 - chr3R_35_5925001 chr3R_5925001 RAL-223 2548 chr3R 5931423 5931444 chr3R 5931559 5931582 10 138 5.0 14.5 9.8 0.9 159 chr3R 5931423 intron CG34113 - chr3R 5931502 intron CG34113 - chr3R 5931582 intron CG34113 - chr3R_10_5930001 chr3R_5930001 RAL-223 2549 chr3R 5935321 5935395 chr3R 5935447 5935530 29 125 6.0 7.5 6.8 3.7 209 chr3R 5935321 intron CG34113 - chr3R 5935426 intron CG34113 - chr3R 5935530 intron CG34113 - chr3R_29_5935001 chr3R_5935001 RAL-223 2550 chr3R 5943353 5943417 chr3R 5943482 5943546 27 128 4.5 5.0 4.8 4.7 193 chr3R 5943353 intron CG34113 - chr3R 5943450 intron CG34113 - chr3R 5943546 intron CG34113 - chr3R_27_5940001 chr3R_5940001 RAL-223 2551 chr3R 5964329 5964400 chr3R 5964484 5964524 21 153 6.0 9.0 7.5 2.5 195 chr3R 5964329 intergenic not near genes chr3R 5964426 intergenic not near genes chr3R 5964524 intergenic not near genes chr3R_21_5960001 chr3R_5960001 RAL-223 2552 chr3R 6015926 6015984 chr3R 6024450 6024515 Tirant 17 8525 7.5 8.0 7.8 1.9 8589 chr3R 6015926 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024515 intergenic not near genes chr3R_17_6020001 chr3R_6020001 RAL-223 2553 chr3R 6043594 6043665 chr3R 6043866 6043927 28 270 10.5 10.0 10.2 2.5 333 chr3R 6043594 intergenic not near genes chr3R 6043760 intergenic not near genes chr3R 6043927 intergenic not near genes chr3R_28_6040001 chr3R_6040001 RAL-223 2554 chr3R 6048398 6048478 chr3R 6048531 6048611 29 132 10.0 8.0 9.0 2.9 213 chr3R 6048398 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048611 intergenic not near genes chr3R_29_6045001 chr3R_6045001 RAL-223 2555 chr3R 6119112 6119155 chr3R 6119248 6119291 16 136 6.5 13.0 9.8 1.5 179 chr3R 6119112 intergenic not near genes chr3R 6119202 intergenic not near genes chr3R 6119291 intergenic not near genes chr3R_16_6115001 chr3R_6115001 RAL-223 2556 chr3R 6158463 6158536 chr3R 6167096 6167169 Tirant 30 8629 12.5 10.0 11.2 2.5 8706 chr3R 6158463 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167169 intergenic CG1077 + chr3R_30_6160001 chr3R_6160001 RAL-223 2557 chr3R 6171104 6171176 chr3R 6171516 6171588 21 412 4.0 4.0 4.0 4.2 484 chr3R 6171104 intergenic not near genes chr3R 6171346 intergenic not near genes chr3R 6171588 intergenic not near genes chr3R_21_6170001 chr3R_6170001 RAL-223 2558 chr3R 6175129 6175200 chr3R 6182451 6182457 HMS-Beagle2 29 7318 9.0 9.0 9.0 2.9 7328 chr3R 6175129 intergenic Osi1 + chr3R 6178793 intron CR45194 + chr3R 6182457 intergenic CR45194 + chr3R_29_6175001 chr3R_6175001 RAL-223 2559 chr3R 6226590 6226644 chr3R 6226728 6226782 28 137 11.0 11.5 11.2 2.3 192 chr3R 6226590 intergenic not near genes chr3R 6226686 intergenic not near genes chr3R 6226782 intergenic not near genes chr3R_28_6225001 chr3R_6225001 RAL-223 2560 chr3R 6428771 6428838 chr3R 6428923 6428990 32 151 3.5 7.0 5.2 5.2 219 chr3R 6428771 intron gpp + chr3R 6428880 intron gpp + chr3R 6428990 intron gpp + chr3R_32_6425001 chr3R_6425001 RAL-223 2561 chr3R 6461551 6461609 chr3R 6461681 6461731 17 129 4.0 8.5 6.2 2.4 180 chr3R 6461551 intergenic not near genes chr3R 6461641 intergenic not near genes chr3R 6461731 intergenic not near genes chr3R_17_6460001 chr3R_6460001 RAL-223 2562 chr3R 6503437 6503517 chr3R 6503568 6503648 32 131 7.0 5.5 6.2 4.4 211 chr3R 6503437 intergenic not near genes chr3R 6503542 intergenic not near genes chr3R 6503648 intergenic not near genes chr3R_32_6500001 chr3R_6500001 RAL-223 2563 chr3R 6509995 6510049 chr3R 6515116 6515180 jockey 18 5130 11.0 9.5 10.2 1.6 5185 chr3R 6509995 intergenic not near genes chr3R 6512588 intergenic not near genes chr3R 6515180 intergenic not near genes chr3R_18_6510001 chr3R_6510001 RAL-223 2564 chr3R 6543795 6543863 chr3R 6543922 6543990 24 123 5.5 12.5 9.0 2.4 195 chr3R 6543795 intron dpr11 - chr3R 6543892 intron dpr11 - chr3R 6543990 intron dpr11 - chr3R_24_6540001 chr3R_6540001 RAL-223 2565 chr3R 6565061 6565133 chr3R 6568940 6569013 30 3881 53.5 59.5 56.5 0.5 3952 chr3R 6565061 intron dpr11 - chr3R 6567037 intron dpr11 - chr3R 6569013 intron dpr11 - chr3R_30_6565001 chr3R_6565001 RAL-223 2566 chr3R 6624216 6624273 chr3R 6624348 6624405 16 132 5.5 5.0 5.2 2.6 189 chr3R 6624216 intergenic not near genes chr3R 6624310 intergenic not near genes chr3R 6624405 intergenic not near genes chr3R_16_6620001 chr3R_6620001 RAL-223 2567 chr3R 6717693 6717705 chr3R 6717849 6717892 4 162 3.0 9.5 6.2 0.6 199 chr3R 6717693 intron pb - chr3R 6717792 intron pb - chr3R 6717892 intron pb - chr3R_4_6715001 chr3R_6715001 RAL-223 2568 chr3R 6737453 6737466 chr3R 6739290 6739303 Doc 7 1837 13.5 9.5 11.5 0.6 1850 chr3R 6737453 intron pb - chr3R 6738378 intron pb - chr3R 6739303 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-223 2569 chr3R 6737476 6737524 chr3R 6739288 6739361 Doc 21 1833 8.0 9.5 8.8 2.1 1885 chr3R 6737476 intron pb - chr3R 6738418 intron pb - chr3R 6739361 intron pb - chr3R_21_6735001 chr3R_6735001 RAL-223 2570 chr3R 6803712 6803748 chr3R 6803840 6803874 7 126 1.0 9.0 5.0 1.2 162 chr3R 6803712 intergenic not near genes chr3R 6803793 intergenic not near genes chr3R 6803874 intergenic not near genes chr3R_7_6800001 chr3R_6800001 RAL-223 2571 chr3R 6918021 6918084 chr3R 6918149 6918212 22 128 9.5 9.5 9.5 2.1 191 chr3R 6918021 intron Antp - chr3R 6918116 intron Antp - chr3R 6918212 intron Antp - chr3R_22_6915001 chr3R_6915001 RAL-223 2572 chr3R 6961161 6961190 chr3R 6961267 6961319 12 125 11.0 8.5 9.8 1.1 158 chr3R 6961161 intron Antp - chr3R 6961240 intron Antp - chr3R 6961319 intron Antp - chr3R_12_6960001 chr3R_6960001 RAL-223 2573 chr3R 6978837 6978906 chr3R 6978972 6979041 19 134 7.0 3.5 5.2 3.1 204 chr3R 6978837 intron Antp - chr3R 6978939 intron Antp - chr3R 6979041 intron Antp - chr3R_19_6975001 chr3R_6975001 RAL-223 2574 chr3R 7092740 7092812 chr3R 7093354 7093426 37 612 12.0 5.5 8.8 3.8 686 chr3R 7092740 3` UTR CR43685 - chr3R 7093083 intron CR43685 - chr3R 7093426 3` UTR CR43685 - chr3R_37_7090001 chr3R_7090001 RAL-223 2575 chr3R 7103233 7103310 chr3R 7103359 7103417 17 117 9.5 11.0 10.2 1.5 184 chr3R 7103233 intron Alh - chr3R 7103325 intron Alh - chr3R 7103417 intron Alh - chr3R_17_7100001 chr3R_7100001 RAL-223 2576 chr3R 7105276 7105338 chr3R 7105409 7105471 26 132 7.5 10.0 8.8 2.7 195 chr3R 7105276 intron Alh - chr3R 7105374 intron Alh - chr3R 7105471 intron Alh - chr3R_26_7105001 chr3R_7105001 RAL-223 2577 chr3R 7121702 7121730 chr3R 7121835 7121863 4 133 7.5 11.0 9.2 0.4 161 chr3R 7121702 exon Alh - chr3R 7121782 intron Alh - chr3R 7121863 intron Alh - chr3R_4_7120001 chr3R_7120001 RAL-223 2578 chr3R 7126468 7126528 chr3R 7126613 7126673 24 145 6.0 10.5 8.2 2.6 205 chr3R 7126468 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126570 3` UTR CG10068 - chr3R 7126673 3` UTR CG10068 - chr3R_24_7125001 chr3R_7125001 RAL-223 2579 chr3R 7132800 7132865 chr3R 7132941 7133006 32 140 8.0 8.0 8.0 3.6 206 chr3R 7132800 intergenic CG31493 + chr3R 7132903 intergenic CG31493 + chr3R 7133006 intergenic CG31493 + chr3R_32_7130001 chr3R_7130001 RAL-223 2580 chr3R 7173635 7173702 chr3R 7173765 7173832 18 130 9.5 8.0 8.8 1.8 197 chr3R 7173635 intron sas + chr3R 7173734 intron sas + chr3R 7173832 intron sas + chr3R_18_7170001 chr3R_7170001 RAL-223 2581 chr3R 7217418 7217479 chr3R 7217689 7217750 19 271 6.0 8.5 7.2 2.3 332 chr3R 7217418 intergenic CG14605 -,CG14606 - chr3R 7217584 intergenic CG14605 - chr3R 7217750 exon CG14605 - chr3R_19_7215001 chr3R_7215001 RAL-223 2582 chr3R 7269873 7269903 chr3R 7270017 7270047 13 144 11.0 7.0 9.0 1.3 174 chr3R 7269873 3` UTR Syt4 + chr3R 7269960 3` UTR Syt4 + chr3R 7270047 3` UTR Syt4 + chr3R_13_7265001 chr3R_7265001 RAL-223 2583 chr3R 7302246 7302288 chr3R 7302388 7302430 20 142 10.0 6.5 8.2 2.2 184 chr3R 7302246 intron rn - chr3R 7302338 intron rn - chr3R 7302430 intron rn - chr3R_20_7300001 chr3R_7300001 RAL-223 2584 chr3R 7302298 7302321 chr3R 7302440 7302463 6 142 4.5 13.0 8.8 0.6 165 chr3R 7302298 intron rn - chr3R 7302380 intron rn - chr3R 7302463 intron rn - chr3R_6_7300001 chr3R_7300001 RAL-223 2585 chr3R 7319749 7319766 chr3R 7319878 7319897 5 130 21.5 11.5 16.5 0.3 148 chr3R 7319749 intergenic not near genes chr3R 7319823 intergenic not near genes chr3R 7319897 intergenic not near genes chr3R_5_7315001 chr3R_7315001 RAL-223 2586 chr3R 7319769 7319789 chr3R 7319899 7319920 6 130 20.0 14.0 17.0 0.3 151 chr3R 7319769 intergenic not near genes chr3R 7319844 intergenic not near genes chr3R 7319920 intergenic not near genes chr3R_6_7315001 chr3R_7315001 RAL-223 2587 chr3R 7363689 7363740 chr3R 7364112 7364163 20 422 6.0 9.5 7.8 2.3 474 chr3R 7363689 intron Mst84Dd - chr3R 7363926 intergenic Mst84Dd -,Mst84Dc - chr3R 7364163 intergenic Mst84Dc -,Mst84Dd - chr3R_20_7360001 chr3R_7360001 RAL-223 2588 chr3R 7405676 7405746 chr3R 7405806 7405870 31 129 9.5 11.5 10.5 2.7 194 chr3R 7405676 intergenic not near genes chr3R 7405773 intergenic not near genes chr3R 7405870 intergenic not near genes chr3R_31_7405001 chr3R_7405001 RAL-223 2589 chr3R 7419833 7419902 chr3R 7419981 7420050 19 148 6.0 6.5 6.2 2.6 217 chr3R 7419833 exon CG31544 + chr3R 7419942 exon CG31544 + chr3R 7420050 exon CG31544 + chr3R_19_7415001 chr3R_7415001 RAL-223 2590 chr3R 7443853 7443909 chr3R 7444376 7444432 21 523 12.0 9.0 10.5 1.8 579 chr3R 7443853 intergenic not near genes chr3R 7444142 intergenic not near genes chr3R 7444432 intergenic not near genes chr3R_21_7440001 chr3R_7440001 RAL-223 2591 chr3R 7447945 7448009 chr3R 7448073 7448137 28 127 12.5 6.5 9.5 2.7 192 chr3R 7447945 intergenic not near genes chr3R 7448041 intergenic not near genes chr3R 7448137 intergenic not near genes chr3R_28_7445001 chr3R_7445001 RAL-223 2592 chr3R 7465234 7465301 chr3R 7465426 7465493 21 191 9.0 7.0 8.0 2.3 259 chr3R 7465234 intergenic not near genes chr3R 7465364 intergenic not near genes chr3R 7465493 intergenic not near genes chr3R_21_7465001 chr3R_7465001 RAL-223 2593 chr3R 7639743 7639813 chr3R 7639934 7640004 29 190 7.5 5.5 6.5 3.9 261 chr3R 7639743 intergenic CG34127 - chr3R 7639874 intergenic CG34127 - chr3R 7640004 intergenic not near genes chr3R_29_7635001 chr3R_7635001 RAL-223 2594 chr3R 7660739 7660815 chr3R 7660880 7660956 32 140 7.0 9.0 8.0 3.6 217 chr3R 7660739 intron Nlg1 + chr3R 7660848 intron Nlg1 + chr3R 7660956 intron Nlg1 + chr3R_32_7660001 chr3R_7660001 RAL-223 2595 chr3R 7677867 7677943 chr3R 7678030 7678104 21 162 4.5 9.5 7.0 2.6 237 chr3R 7677867 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678104 intron Nlg1 + chr3R_21_7675001 chr3R_7675001 RAL-223 2596 chr3R 7682224 7682300 chr3R 7682362 7682437 25 137 5.5 8.5 7.0 3.1 213 chr3R 7682224 intron Nlg1 + chr3R 7682330 intron Nlg1 + chr3R 7682437 intron Nlg1 + chr3R_25_7680001 chr3R_7680001 RAL-223 2597 chr3R 7694536 7694607 chr3R 7713647 7713718 invader3 27 19111 5.5 8.0 6.8 3.5 19182 chr3R 7694536 3` UTR Nlg1 + chr3R 7704127 intergenic not near genes chr3R 7713718 intergenic not near genes chr3R_27_7700001 chr3R_7700001 RAL-223 2598 chr3R 7729424 7729488 chr3R 7737412 7737476 Stalker2 30 7988 5.5 10.5 8.0 3.3 8052 chr3R 7729424 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737476 intergenic not near genes chr3R_30_7730001 chr3R_7730001 RAL-223 2599 chr3R 7754205 7754281 chr3R 7754520 7754579 30 313 8.0 6.5 7.2 3.7 374 chr3R 7754205 intergenic not near genes chr3R 7754392 intergenic not near genes chr3R 7754579 intergenic not near genes chr3R_30_7750001 chr3R_7750001 RAL-223 2600 chr3R 7857605 7857664 chr3R 7857738 7857797 17 133 8.5 9.0 8.8 1.7 192 chr3R 7857605 3` UTR CG17816 - chr3R 7857701 3` UTR CG17816 - chr3R 7857797 3` UTR CG17816 - chr3R_17_7855001 chr3R_7855001 RAL-223 2601 chr3R 7973284 7973333 chr3R 7974396 7974445 1360 19 1112 8.5 12.5 10.5 1.7 1161 chr3R 7973284 intergenic not near genes chr3R 7973864 intergenic not near genes chr3R 7974445 3` UTR CD98hc - chr3R_19_7970001 chr3R_7970001 RAL-223 2602 chr3R 8040602 8040614 chr3R 8040736 8040748 5 134 12.5 6.5 9.5 0.5 146 chr3R 8040602 intergenic not near genes chr3R 8040675 intergenic not near genes chr3R 8040748 intergenic CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-223 2603 chr3R 8040618 8040677 chr3R 8040734 8040811 6 131 6.0 6.5 6.2 0.8 193 chr3R 8040618 intergenic not near genes chr3R 8040714 intergenic not near genes chr3R 8040811 intergenic CG43060 + chr3R_6_8040001 chr3R_8040001 RAL-223 2604 chr3R 8056104 8056115 chr3R 8056304 8056305 5 198 25.5 9.0 17.2 0.3 201 chr3R 8056104 intergenic CG43060 + chr3R 8056204 intergenic CG43060 + chr3R 8056305 intergenic CG43060 + chr3R_5_8055001 chr3R_8055001 RAL-223 2605 chr3R 8056116 8056173 chr3R 8056303 8056373 26 196 12.0 8.0 10.0 2.4 257 chr3R 8056116 intergenic CG43060 + chr3R 8056244 intergenic CG43060 + chr3R 8056373 intergenic CG43060 + chr3R_26_8055001 chr3R_8055001 RAL-223 2606 chr3R 8082537 8082591 chr3R 8082664 8082718 20 126 11.0 14.5 12.8 1.4 181 chr3R 8082537 intron mAChR-B + chr3R 8082628 intron mAChR-B + chr3R 8082718 exon mAChR-B + chr3R_20_8080001 chr3R_8080001 RAL-223 2607 chr3R 8090515 8090564 chr3R 8094042 8094066 297 23 3523 6.5 12.0 9.2 2.3 3551 chr3R 8090515 intergenic CR44330 + chr3R 8092290 intergenic not near genes chr3R 8094066 intergenic CG7900 + chr3R_23_8090001 chr3R_8090001 RAL-223 2608 chr3R 8094367 8094432 chr3R 8099722 8099787 Transpac 27 5355 8.0 11.5 9.8 2.5 5420 chr3R 8094367 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099787 intron CG7900 + chr3R_27_8095001 chr3R_8095001 RAL-223 2609 chr3R 8207515 8207577 chr3R 8208410 8208472 F-element 29 893 6.5 10.0 8.2 3.2 957 chr3R 8207515 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208472 intergenic not near genes chr3R_29_8205001 chr3R_8205001 RAL-223 2610 chr3R 8281016 8281031 chr3R 8281106 8281130 6 102 11.5 11.5 11.5 0.5 114 chr3R 8281016 intergenic not near genes chr3R 8281073 intergenic not near genes chr3R 8281130 intergenic not near genes chr3R_6_8280001 chr3R_8280001 RAL-223 2611 chr3R 8393527 8393604 chr3R 8393661 8393738 22 133 4.0 6.0 5.0 3.7 211 chr3R 8393527 intron CG45263 - chr3R 8393632 intron CG45263 - chr3R 8393738 intron CG45263 - chr3R_22_8390001 chr3R_8390001 RAL-223 2612 chr3R 8402958 8403032 chr3R 8412174 8412248 roo 23 9214 12.5 3.5 8.0 2.6 9290 chr3R 8402958 intron CG45263 - chr3R 8407603 intron CG45263 - chr3R 8412248 intron CG45263 - chr3R_23_8405001 chr3R_8405001 RAL-223 2613 chr3R 8475566 8475637 chr3R 8476306 8476377 34 738 7.5 9.5 8.5 3.6 811 chr3R 8475566 intron CG45263 - chr3R 8475972 intron CG45263 - chr3R 8476377 intron CG45263 - chr3R_34_8475001 chr3R_8475001 RAL-223 2614 chr3R 8552323 8552392 chr3R 8552453 8552522 32 129 10.5 8.5 9.5 3.0 199 chr3R 8552323 intergenic Or85d + chr3R 8552422 intergenic Or85d + chr3R 8552522 intergenic Or85d + chr3R_32_8550001 chr3R_8550001 RAL-223 2615 chr3R 8570438 8570441 chr3R 8575124 8575127 HMS-Beagle 4 4686 21.5 17.0 19.2 0.2 4689 chr3R 8570438 intergenic not near genes chr3R 8572782 intergenic not near genes chr3R 8575127 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-223 2616 chr3R 8570443 8570500 chr3R 8575122 8575186 HMS-Beagle 25 4685 10.5 16.5 13.5 1.7 4743 chr3R 8570443 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575186 intergenic not near genes chr3R_25_8570001 chr3R_8570001 RAL-223 2617 chr3R 8601725 8601791 chr3R 8610928 8610982 roo 26 9201 6.0 11.5 8.8 2.7 9257 chr3R 8601725 intron 5-HT2B + chr3R 8606354 intron 5-HT2B + chr3R 8610982 intron 5-HT2B + chr3R_26_8605001 chr3R_8605001 RAL-223 2618 chr3R 8612042 8612106 chr3R 8612171 8612235 22 128 6.0 7.0 6.5 2.9 193 chr3R 8612042 intron 5-HT2B + chr3R 8612138 intron 5-HT2B + chr3R 8612235 intron 5-HT2B + chr3R_22_8610001 chr3R_8610001 RAL-223 2619 chr3R 8617827 8617900 chr3R 8618233 8618295 36 404 8.0 0.5 4.2 6.9 468 chr3R 8617827 intron 5-HT2B + chr3R 8618061 intron 5-HT2B + chr3R 8618295 intron 5-HT2B + chr3R_36_8615001 chr3R_8615001 RAL-223 2620 chr3R 8621498 8621500 chr3R 8621625 8621627 4 127 20.5 0.0 10.2 0.4 129 chr3R 8621498 intron 5-HT2B + chr3R 8621562 intron 5-HT2B + chr3R 8621627 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-223 2621 chr3R 8642373 8642443 chr3R 8642500 8642570 29 123 9.0 6.5 7.8 3.3 197 chr3R 8642373 intergenic not near genes chr3R 8642472 intergenic not near genes chr3R 8642570 intergenic Cyp313b1 - chr3R_29_8640001 chr3R_8640001 RAL-223 2622 chr3R 8685249 8685315 chr3R 8685399 8685460 20 150 10.5 8.5 9.5 1.9 211 chr3R 8685249 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685460 intron CR44937 - chr3R_20_8685001 chr3R_8685001 RAL-223 2623 chr3R 8707311 8707377 chr3R 8709802 8709868 jockey 29 2491 10.0 8.5 9.2 2.8 2557 chr3R 8707311 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709868 intergenic not near genes chr3R_29_8705001 chr3R_8705001 RAL-223 2624 chr3R 8827459 8827532 chr3R 8827585 8827658 28 126 7.5 11.0 9.2 2.7 199 chr3R 8827459 intergenic pyd -,CG8379 + chr3R 8827558 3` UTR pyd - chr3R 8827658 3` UTR pyd - chr3R_28_8825001 chr3R_8825001 RAL-223 2625 chr3R 8866207 8866284 chr3R 8866780 8866857 39 574 68.0 61.5 64.8 0.6 650 chr3R 8866207 intron pyd - chr3R 8866532 intron pyd - chr3R 8866857 intron pyd - chr3R_39_8865001 chr3R_8865001 RAL-223 2626 chr3R 8868755 8868787 chr3R 8872649 8872681 297 7 3894 15.0 8.0 11.5 0.6 3926 chr3R 8868755 intron pyd - chr3R 8870718 intron pyd - chr3R 8872681 intron pyd - chr3R_7_8870001 chr3R_8870001 RAL-223 2627 chr3R 8877336 8877409 chr3R 8877473 8877545 26 136 5.5 9.0 7.2 3.2 209 chr3R 8877336 intron pyd - chr3R 8877440 intron pyd - chr3R 8877545 intron pyd - chr3R_26_8875001 chr3R_8875001 RAL-223 2628 chr3R 8882013 8882088 chr3R 8882154 8882229 16 141 6.5 8.0 7.2 2.0 216 chr3R 8882013 intron pyd - chr3R 8882121 intron pyd - chr3R 8882229 intron pyd - chr3R_16_8880001 chr3R_8880001 RAL-223 2629 chr3R 8883270 8883334 chr3R 8883401 8883464 20 130 4.0 7.0 5.5 3.1 194 chr3R 8883270 intron pyd - chr3R 8883367 intron pyd - chr3R 8883464 intron pyd - chr3R_20_8880001 chr3R_8880001 RAL-223 2630 chr3R 8894828 8894890 chr3R 8896034 8896096 1360 12 1204 7.0 9.5 8.2 1.3 1268 chr3R 8894828 intron pyd - chr3R 8895462 intron pyd - chr3R 8896096 intron pyd - chr3R_12_8895001 chr3R_8895001 RAL-223 2631 chr3R 8898175 8898211 chr3R 8913803 8913839 297 14 15628 9.5 7.0 8.2 1.5 15664 chr3R 8898175 intron pyd - chr3R 8906007 intron pyd - chr3R 8913839 intron pyd - chr3R_14_8905001 chr3R_8905001 RAL-223 2632 chr3R 8917847 8917911 chr3R 8917977 8918041 25 130 4.5 9.0 6.8 3.2 194 chr3R 8917847 intron pyd - chr3R 8917944 intron pyd - chr3R 8918041 intron pyd - chr3R_25_8915001 chr3R_8915001 RAL-223 2633 chr3R 8918161 8918237 chr3R 8918303 8918370 40 141 6.0 10.0 8.0 4.4 209 chr3R 8918161 intron pyd - chr3R 8918266 intron pyd - chr3R 8918370 intron pyd - chr3R_40_8915001 chr3R_8915001 RAL-223 2634 chr3R 9079562 9079573 chr3R 9079670 9079710 5 130 14.5 11.0 12.8 0.4 148 chr3R 9079562 intron pum - chr3R 9079636 intron pum - chr3R 9079710 intron pum - chr3R_5_9075001 chr3R_9075001 RAL-223 2635 chr3R 9108819 9108883 chr3R 9108945 9109009 27 126 7.0 10.0 8.5 2.8 190 chr3R 9108819 intron pum - chr3R 9108914 intron pum - chr3R 9109009 intron pum - chr3R_27_9105001 chr3R_9105001 RAL-223 2636 chr3R 9171876 9171937 chr3R 9172291 9172352 18 415 6.0 9.0 7.5 2.1 476 chr3R 9171876 intron pum - chr3R 9172114 intron pum - chr3R 9172352 intron pum - chr3R_18_9170001 chr3R_9170001 RAL-223 2637 chr3R 9550567 9550617 chr3R 9550711 9550761 21 144 8.0 10.0 9.0 2.1 194 chr3R 9550567 intron,intron mura -,CR42549 - chr3R 9550664 intron,intron mura -,CR42549 - chr3R 9550761 intron,intron mura -,CR42549 - chr3R_21_9550001 chr3R_9550001 RAL-223 2638 chr3R 9586653 9586720 chr3R 9586795 9586862 35 142 9.0 8.0 8.5 3.7 209 chr3R 9586653 intergenic CG8301 +,P58IPK + chr3R 9586758 intergenic CG8301 +,P58IPK + chr3R 9586862 intergenic P58IPK +,CG8301 + chr3R_35_9585001 chr3R_9585001 RAL-223 2639 chr3R 9601425 9601490 chr3R 9601593 9601658 21 168 4.0 10.5 7.2 2.6 233 chr3R 9601425 intron CG8312 + chr3R 9601542 intron CG8312 + chr3R 9601658 intron CG8312 + chr3R_21_9600001 chr3R_9600001 RAL-223 2640 chr3R 9836863 9836932 chr3R 9837005 9837065 27 141 7.0 6.5 6.8 3.5 202 chr3R 9836863 intron Teh1 - chr3R 9836964 intron Teh1 - chr3R 9837065 intron Teh1 - chr3R_27_9835001 chr3R_9835001 RAL-223 2641 chr3R 9964812 9964865 chr3R 9964989 9964994 6 162 24.0 24.0 24.0 0.2 182 chr3R 9964812 intron Glut4EF + chr3R 9964903 intron Glut4EF + chr3R 9964994 intron Glut4EF + chr3R_6_9960001 chr3R_9960001 RAL-223 2642 chr3R 10085902 10085981 chr3R 10086250 10086329 30 347 5.0 8.5 6.8 3.8 427 chr3R 10085902 intron CR45054 + chr3R 10086116 intron CR45054 + chr3R 10086329 intron CR45054 + chr3R_30_10085001 chr3R_10085001 RAL-223 2643 chr3R 10090244 10090256 chr3R 10090384 10090385 7 138 10.5 21.0 15.8 0.4 141 chr3R 10090244 5` UTR CR45054 + chr3R 10090314 5` UTR CR45054 + chr3R 10090385 5` UTR CR45054 + chr3R_7_10090001 chr3R_10090001 RAL-223 2644 chr3R 10114234 10114301 chr3R 10114638 10114705 25 404 6.0 5.0 5.5 3.8 471 chr3R 10114234 intron CG3940 + chr3R 10114470 intron CG3940 + chr3R 10114705 intron CG3940 + chr3R_25_10110001 chr3R_10110001 RAL-223 2645 chr3R 10178203 10178233 chr3R 10178330 10178360 9 127 11.0 9.0 10.0 0.8 157 chr3R 10178203 intron CG12814 - chr3R 10178282 intron CG12814 - chr3R 10178360 intron CG12814 - chr3R_9_10175001 chr3R_10175001 RAL-223 2646 chr3R 10192238 10192302 chr3R 10192474 10192538 32 234 8.5 7.5 8.0 3.6 300 chr3R 10192238 intron Syn + chr3R 10192388 intron Syn + chr3R 10192538 intron Syn + chr3R_32_10190001 chr3R_10190001 RAL-223 2647 chr3R 10196907 10196928 chr3R 10202944 10202965 297 11 6037 18.0 5.0 11.5 0.9 6058 chr3R 10196907 exon Syn + chr3R 10199936 intron Syn + chr3R 10202965 intron Syn + chr3R_11_10195001 chr3R_10195001 RAL-223 2648 chr3R 10231104 10231176 chr3R 10231624 10231696 25 520 7.5 6.0 6.8 3.2 592 chr3R 10231104 intron CG42795 + chr3R 10231400 intron CG42795 + chr3R 10231696 intron CG42795 + chr3R_25_10230001 chr3R_10230001 RAL-223 2649 chr3R 10231739 10231808 chr3R 10237366 10237435 mdg3 37 5627 7.5 7.5 7.5 4.4 5696 chr3R 10231739 intron CG42795 + chr3R 10234587 intron CG42795 + chr3R 10237435 intron CG42795 + chr3R_37_10230001 chr3R_10230001 RAL-223 2650 chr3R 10255336 10255377 chr3R 10260826 10260867 I-element 12 5489 12.5 9.0 10.8 1.0 5531 chr3R 10255336 intergenic Sirt6 -,CG3999 + chr3R 10258102 intron Sirt6 - chr3R 10260867 exon Sirt6 - chr3R_12_10255001 chr3R_10255001 RAL-223 2651 chr3R 10306958 10307032 chr3R 10312167 10312241 36 5209 62.5 49.0 55.8 0.6 5283 chr3R 10306958 exon CG43143 + chr3R 10309600 exon CG6293 - chr3R 10312241 3` UTR Bruce - chr3R_36_10305001 chr3R_10305001 RAL-223 2652 chr3R 10402981 10403060 chr3R 10403111 10403190 18 130 6.5 5.5 6.0 2.6 209 chr3R 10402981 3` UTR CG6325 - chr3R 10403086 3` UTR CG6325 - chr3R 10403190 3` UTR CG6325 - chr3R_18_10400001 chr3R_10400001 RAL-223 2653 chr3R 10417427 10417504 chr3R 10417812 10417889 21 385 7.5 8.0 7.8 2.4 462 chr3R 10417427 intergenic not near genes chr3R 10417658 intergenic not near genes chr3R 10417889 intergenic not near genes chr3R_21_10415001 chr3R_10415001 RAL-223 2654 chr3R 6090420 6090421 chr3R 10451877 10451877 4 4361456 37.0 39.0 38.0 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_4_8270001 chr3R_8270001 RAL-223 2655 chr3R 10451877 10451877 chr3R 12722496 12722496 4 2270619 37.0 27.5 32.2 0.1 2270619 chr3R 10451877 intergenic not near genes chr3R 11587186 exon CG6791 - chr3R 12722496 intergenic Men - chr3R_4_11585001 chr3R_11585001 RAL-223 2656 chr3R 10593432 10593456 chr3R 10593534 10593591 6 126 7.0 8.5 7.8 0.7 159 chr3R 10593432 intron hth - chr3R 10593512 intron hth - chr3R 10593591 exon hth - chr3R_6_10590001 chr3R_10590001 RAL-223 2657 chr3R 10641543 10641619 chr3R 10641673 10641749 24 130 7.0 8.5 7.8 2.7 206 chr3R 10641543 5` UTR CR44018 + chr3R 10641646 5` UTR CR44018 + chr3R 10641749 5` UTR CR44018 + chr3R_24_10640001 chr3R_10640001 RAL-223 2658 chr3R 10716387 10716450 chr3R 10716585 10716648 28 197 13.0 12.5 12.8 2.0 261 chr3R 10716387 intergenic CG4073 + chr3R 10716518 intergenic not near genes chr3R 10716648 intergenic not near genes chr3R_28_10715001 chr3R_10715001 RAL-223 2659 chr3R 10723468 10723524 chr3R 10723591 10723658 26 133 3.5 9.0 6.2 3.6 190 chr3R 10723468 intergenic not near genes chr3R 10723563 intergenic not near genes chr3R 10723658 intergenic not near genes chr3R_26_10720001 chr3R_10720001 RAL-223 2660 chr3R 10745376 10745454 chr3R 10745513 10745566 28 134 1.5 7.0 4.2 5.4 190 chr3R 10745376 intron TkR86C - chr3R 10745471 intron TkR86C - chr3R 10745566 intron TkR86C - chr3R_28_10745001 chr3R_10745001 RAL-223 2661 chr3R 10804138 10804189 chr3R 10811720 10811771 17.6 18 7582 7.0 12.5 9.8 1.7 7633 chr3R 10804138 intergenic CG14692 - chr3R 10807954 intergenic not near genes chr3R 10811771 3` UTR CG14693 - chr3R_18_10805001 chr3R_10805001 RAL-223 2662 chr3R 10868562 10868625 chr3R 10868679 10868689 16 112 11.5 9.0 10.2 1.4 127 chr3R 10868562 5` UTR SelR - chr3R 10868626 5` UTR SelR - chr3R 10868689 intergenic Tsp86D +,SelR - chr3R_16_10865001 chr3R_10865001 RAL-223 2663 chr3R 10919644 10919715 chr3R 10919772 10919843 25 127 9.5 7.5 8.5 2.6 199 chr3R 10919644 intergenic not near genes chr3R 10919744 intergenic not near genes chr3R 10919843 intergenic not near genes chr3R_25_10915001 chr3R_10915001 RAL-223 2664 chr3R 10920002 10920070 chr3R 10920130 10920198 22 128 7.5 7.5 7.5 2.6 196 chr3R 10920002 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920198 intergenic not near genes chr3R_22_10920001 chr3R_10920001 RAL-223 2665 chr3R 10957815 10957884 chr3R 10963252 10963323 Rt1c 21 5434 6.0 2.5 4.2 4.0 5508 chr3R 10957815 intergenic not near genes chr3R 10960569 intergenic not near genes chr3R 10963323 intergenic not near genes chr3R_21_10960001 chr3R_10960001 RAL-223 2666 chr3R 11056862 11056893 chr3R 11056990 11057021 5 128 10.5 0.0 5.2 0.8 159 chr3R 11056862 intergenic not near genes chr3R 11056942 intergenic not near genes chr3R 11057021 intergenic not near genes chr3R_5_11055001 chr3R_11055001 RAL-223 2667 chr3R 11085422 11085487 chr3R 11085549 11085614 17 126 6.0 8.0 7.0 2.1 192 chr3R 11085422 3` UTR CR44940 - chr3R 11085518 intergenic CR44940 - chr3R 11085614 intergenic CR44940 - chr3R_17_11085001 chr3R_11085001 RAL-223 2668 chr3R 11088620 11088691 chr3R 11088762 11088833 19 142 7.0 5.0 6.0 2.7 213 chr3R 11088620 exon CG43449 + chr3R 11088726 3` UTR CG43449 + chr3R 11088833 3` UTR CG43449 + chr3R_19_11085001 chr3R_11085001 RAL-223 2669 chr3R 11090801 11090868 chr3R 11090938 11091006 28 137 11.0 9.5 10.2 2.5 205 chr3R 11090801 intergenic not near genes chr3R 11090904 intergenic not near genes chr3R 11091006 intergenic not near genes chr3R_28_11090001 chr3R_11090001 RAL-223 2670 chr3R 11102285 11102314 chr3R 11102414 11102445 17 129 18.0 9.5 13.8 1.1 160 chr3R 11102285 intergenic not near genes chr3R 11102365 intergenic not near genes chr3R 11102445 intergenic not near genes chr3R_17_11100001 chr3R_11100001 RAL-223 2671 chr3R 11120540 11120564 chr3R 11120716 11120740 11 175 3.0 5.0 4.0 2.2 200 chr3R 11120540 intergenic not near genes chr3R 11120640 intergenic not near genes chr3R 11120740 intergenic not near genes chr3R_11_11120001 chr3R_11120001 RAL-223 2672 chr3R 11130078 11130113 chr3R 11130210 11130252 5 137 15.0 0.0 7.5 0.6 174 chr3R 11130078 intergenic not near genes chr3R 11130165 intergenic not near genes chr3R 11130252 intergenic not near genes chr3R_5_11130001 chr3R_11130001 RAL-223 2673 chr3R 11148871 11148875 chr3R 11148997 11149001 4 126 22.0 4.0 13.0 0.3 130 chr3R 11148871 intergenic not near genes chr3R 11148936 intergenic not near genes chr3R 11149001 intergenic not near genes chr3R_4_11145001 chr3R_11145001 RAL-223 2674 chr3R 11157037 11157093 chr3R 11157178 11157234 18 141 7.0 12.0 9.5 1.7 197 chr3R 11157037 intergenic Ugt86Da + chr3R 11157136 5` UTR Ugt86Da + chr3R 11157234 5` UTR Ugt86Da + chr3R_18_11155001 chr3R_11155001 RAL-223 2675 chr3R 11174564 11174607 chr3R 11175328 11175371 8 764 28.5 47.5 38.0 0.2 807 chr3R 11174564 exon Ugt86Dj - chr3R 11174968 intron Ugt86Dj - chr3R 11175371 exon Ugt86Dj - chr3R_8_11170001 chr3R_11170001 RAL-223 2676 chr3R 11247195 11247226 chr3R 11247326 11247357 INE-1 12 131 17.5 3.5 10.5 1.0 162 chr3R 11247195 intergenic CG5214 +,CR43283 - chr3R 11247276 intergenic CR43283 -,CG5214 + chr3R 11247357 intergenic CR43283 -,CG5214 + chr3R_12_11245001 chr3R_11245001 RAL-223 2677 chr3R 11265881 11265917 chr3R 11266015 11266051 18 133 8.0 17.0 12.5 1.3 170 chr3R 11265881 intergenic not near genes chr3R 11265966 intergenic not near genes chr3R 11266051 intergenic not near genes chr3R_18_11265001 chr3R_11265001 RAL-223 2678 chr3R 11294417 11294484 chr3R 11294778 11294829 34 360 13.5 6.0 9.8 3.1 412 chr3R 11294417 intron CR31386 - chr3R 11294623 intron CR31386 - chr3R 11294829 intron CR31386 - chr3R_34_11290001 chr3R_11290001 RAL-223 2679 chr3R 11307146 11307218 chr3R 11307281 11307354 15 133 11.5 7.0 9.2 1.5 208 chr3R 11307146 intergenic not near genes chr3R 11307250 intergenic not near genes chr3R 11307354 intergenic not near genes chr3R_15_11305001 chr3R_11305001 RAL-223 2680 chr3R 11379197 11379211 chr3R 11388402 11388416 roo 8 9205 8.0 10.0 9.0 0.8 9219 chr3R 11379197 intron pros + chr3R 11383806 intron pros + chr3R 11388416 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-223 2681 chr3R 11379216 11379228 chr3R 11388393 11388433 roo 5 9198 8.0 6.0 7.0 0.6 9217 chr3R 11379216 intron pros + chr3R 11383824 intron pros + chr3R 11388433 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-223 2682 chr3R 11457585 11457590 chr3R 11457725 11457730 8 140 19.5 17.5 18.5 0.4 145 chr3R 11457585 intron,intron CG17230 +,PGRP-LB - chr3R 11457658 intron,intron CG17230 +,PGRP-LB - chr3R 11457730 intron,intron CG17230 +,PGRP-LB - chr3R_8_11455001 chr3R_11455001 RAL-223 2683 chr3R 11461513 11461587 chr3R 11461687 11461760 25 173 11.0 4.5 7.8 2.8 247 chr3R 11461513 intron CG17230 + chr3R 11461636 intron CG17230 + chr3R 11461760 intron CG17230 + chr3R_25_11460001 chr3R_11460001 RAL-223 2684 chr3R 11476906 11476961 chr3R 11477058 11477113 15 151 10.5 5.5 8.0 1.7 207 chr3R 11476906 intergenic not near genes chr3R 11477010 intergenic not near genes chr3R 11477113 intergenic not near genes chr3R_15_11475001 chr3R_11475001 RAL-223 2685 chr3R 11518775 11518840 chr3R 11518916 11518981 24 141 7.0 9.5 8.2 2.6 206 chr3R 11518775 intergenic not near genes chr3R 11518878 intergenic not near genes chr3R 11518981 intergenic not near genes chr3R_24_11515001 chr3R_11515001 RAL-223 2686 chr3R 11551127 11551181 chr3R 11551262 11551266 15 130 6.5 13.5 10.0 1.4 139 chr3R 11551127 intergenic not near genes chr3R 11551196 intergenic not near genes chr3R 11551266 intergenic not near genes chr3R_15_11550001 chr3R_11550001 RAL-223 2687 chr3R 11558295 11558370 chr3R 11560681 11560756 32 2385 49.0 36.5 42.8 0.7 2461 chr3R 11558295 5` UTR CG10898 + chr3R 11559526 exon CG10898 + chr3R 11560756 3` UTR,exon fabp -,sea - chr3R_32_11555001 chr3R_11555001 RAL-223 2688 chr3R 11557357 11557435 chr3R 11561930 11562008 33 4573 61.5 70.5 66.0 0.5 4651 chr3R 11557357 intergenic CG10898 + chr3R 11559682 3` UTR CG10898 + chr3R 11562008 intron,intron fabp -,sea - chr3R_33_11555001 chr3R_11555001 RAL-223 2689 chr3R 11571773 11571852 chr3R 11571919 11571996 21 145 7.5 6.5 7.0 2.6 223 chr3R 11571773 exon Mrp4 + chr3R 11571884 intron Mrp4 + chr3R 11571996 intron Mrp4 + chr3R_21_11570001 chr3R_11570001 RAL-223 2690 chr3R 11589717 11589785 chr3R 11589870 11589912 29 148 10.0 10.5 10.2 2.6 195 chr3R 11589717 exon CG6791 - chr3R 11589814 5` UTR CG6791 - chr3R 11589912 5` UTR CG6791 - chr3R_29_11585001 chr3R_11585001 RAL-223 2691 chr3R 11664741 11664816 chr3R 11664883 11664958 40 142 0.0 8.5 4.2 7.7 217 chr3R 11664741 intron CG42327 + chr3R 11664850 intron CG42327 + chr3R 11664958 intron CG42327 + chr3R_40_11660001 chr3R_11660001 RAL-223 2692 chr3R 11694681 11694742 chr3R 11694824 11694885 30 142 10.5 13.5 12.0 2.3 204 chr3R 11694681 intergenic Fer3 - chr3R 11694783 intergenic Fer3 - chr3R 11694885 intergenic not near genes chr3R_30_11690001 chr3R_11690001 RAL-223 2693 chr3R 11708673 11708691 chr3R 11708799 11708817 10 126 10.5 4.5 7.5 1.2 144 chr3R 11708673 intergenic not near genes chr3R 11708745 intergenic not near genes chr3R 11708817 intergenic not near genes chr3R_10_11705001 chr3R_11705001 RAL-223 2694 chr3R 11734115 11734186 chr3R 11734284 11734355 20 168 6.5 1.5 4.0 4.0 240 chr3R 11734115 intergenic not near genes chr3R 11734235 intergenic not near genes chr3R 11734355 intergenic not near genes chr3R_20_11730001 chr3R_11730001 RAL-223 2695 chr3R 11763875 11763941 chr3R 11764005 11764072 7 131 2.5 7.5 5.0 1.2 197 chr3R 11763875 5` UTR Lk6 - chr3R 11763974 5` UTR Lk6 - chr3R 11764072 5` UTR Lk6 - chr3R_7_11760001 chr3R_11760001 RAL-223 2696 chr3R 11830305 11830359 chr3R 11830439 11830493 23 134 7.0 9.5 8.2 2.5 188 chr3R 11830305 intron CG6959 - chr3R 11830399 intron CG6959 - chr3R 11830493 intron CG6959 - chr3R_23_11830001 chr3R_11830001 RAL-223 2697 chr3R 11830926 11830939 chr3R 11831120 11831133 7 194 13.0 7.0 10.0 0.6 207 chr3R 11830926 intron CG6959 - chr3R 11831030 intron CG6959 - chr3R 11831133 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-223 2698 chr3R 11841016 11841045 chr3R 11846257 11846286 BS 9 5239 16.5 11.5 14.0 0.6 5270 chr3R 11841016 intron CG6959 - chr3R 11843651 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_9_11840001 chr3R_11840001 RAL-223 2699 chr3R 11841050 11841088 chr3R 11846252 11846329 BS 18 5235 6.0 11.0 8.5 1.9 5279 chr3R 11841050 intron CG6959 - chr3R 11843690 intron CG6959 - chr3R 11846329 intron CG6959 - chr3R_18_11840001 chr3R_11840001 RAL-223 2700 chr3R 11853403 11853464 chr3R 11853602 11853661 20 198 5.5 8.5 7.0 2.5 258 chr3R 11853403 intron CG6959 - chr3R 11853532 intron CG6959 - chr3R 11853661 intron CG6959 - chr3R_20_11850001 chr3R_11850001 RAL-223 2701 chr3R 11853729 11853794 chr3R 11853884 11853949 28 155 10.0 9.5 9.8 2.6 220 chr3R 11853729 intron CG6959 - chr3R 11853839 intron CG6959 - chr3R 11853949 intron CG6959 - chr3R_28_11850001 chr3R_11850001 RAL-223 2702 chr3R 11909324 11909393 chr3R 11909447 11909469 19 123 12.0 6.5 9.2 1.9 145 chr3R 11909324 intron Cad87A - chr3R 11909396 intron Cad87A - chr3R 11909469 intron Cad87A - chr3R_19_11905001 chr3R_11905001 RAL-223 2703 chr3R 11957814 11957881 chr3R 11958146 11958213 S-element 16 332 4.5 2.0 3.2 3.8 399 chr3R 11957814 intergenic not near genes chr3R 11958014 intergenic not near genes chr3R 11958213 intergenic not near genes chr3R_16_11955001 chr3R_11955001 RAL-223 2704 chr3R 12022838 12022909 chr3R 12025065 12025136 pogo 33 2227 3.0 12.0 7.5 3.9 2298 chr3R 12022838 intergenic not near genes chr3R 12023987 intergenic not near genes chr3R 12025136 intergenic not near genes chr3R_33_12020001 chr3R_12020001 RAL-223 2705 chr3R 12045125 12045202 chr3R 12045250 12045328 32 125 11.0 10.0 10.5 2.8 203 chr3R 12045125 intergenic not near genes chr3R 12045226 intergenic not near genes chr3R 12045328 intergenic not near genes chr3R_32_12045001 chr3R_12045001 RAL-223 2706 chr3R 12052368 12052399 chr3R 12052494 12052526 9 125 21.0 15.0 18.0 0.5 158 chr3R 12052368 intergenic not near genes chr3R 12052447 intergenic not near genes chr3R 12052526 intergenic not near genes chr3R_9_12050001 chr3R_12050001 RAL-223 2707 chr3R 12102830 12102871 chr3R 12102981 12103003 20 147 14.0 12.5 13.2 1.4 173 chr3R 12102830 intron dpr17 + chr3R 12102916 intron dpr17 + chr3R 12103003 intron dpr17 + chr3R_20_12100001 chr3R_12100001 RAL-223 2708 chr3R 12182920 12182926 chr3R 12183054 12183060 6 134 16.0 7.5 11.8 0.5 140 chr3R 12182920 intergenic not near genes chr3R 12182990 intergenic not near genes chr3R 12183060 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-223 2709 chr3R 12182927 12182982 chr3R 12183046 12183116 22 128 3.5 6.5 5.0 3.7 189 chr3R 12182927 intergenic not near genes chr3R 12183022 intergenic not near genes chr3R 12183116 intergenic not near genes chr3R_22_12180001 chr3R_12180001 RAL-223 2710 chr3R 12182983 12182987 chr3R 12183041 12183121 5 119 3.5 6.5 5.0 0.8 138 chr3R 12182983 intergenic not near genes chr3R 12183052 intergenic not near genes chr3R 12183121 intergenic not near genes chr3R_5_12180001 chr3R_12180001 RAL-223 2711 chr3R 12246715 12246793 chr3R 12246849 12246927 36 134 9.5 8.5 9.0 3.6 212 chr3R 12246715 intergenic not near genes chr3R 12246821 intergenic not near genes chr3R 12246927 intergenic not near genes chr3R_36_12245001 chr3R_12245001 RAL-223 2712 chr3R 12267811 12267885 chr3R 12267941 12268015 25 130 7.5 6.5 7.0 3.1 204 chr3R 12267811 intron svp + chr3R 12267913 intron svp + chr3R 12268015 intron svp + chr3R_25_12265001 chr3R_12265001 RAL-223 2713 chr3R 12297603 12297645 chr3R 12297730 12297772 7 124 19.0 21.5 20.2 0.3 169 chr3R 12297603 intron svp + chr3R 12297688 intron svp + chr3R 12297772 intron svp + chr3R_7_12295001 chr3R_12295001 RAL-223 2714 chr3R 12328112 12328184 chr3R 12328273 12328347 28 161 8.5 7.0 7.8 3.2 235 chr3R 12328112 intergenic CR45584 + chr3R 12328230 intergenic CR45584 + chr3R 12328347 intergenic CR45584 + chr3R_28_12325001 chr3R_12325001 RAL-223 2715 chr3R 12369156 12369196 chr3R 12369330 12369350 9 164 16.0 5.5 10.8 0.8 194 chr3R 12369156 intron GstD1 - chr3R 12369253 5` UTR GstD1 - chr3R 12369350 intergenic GstD1 - chr3R_9_12365001 chr3R_12365001 RAL-223 2716 chr3R 12445427 12445432 chr3R 12445599 12445604 7 172 21.5 26.0 23.8 0.3 177 chr3R 12445427 intron Desat1 + chr3R 12445516 intron Desat1 + chr3R 12445604 intron Desat1 + chr3R_7_12445001 chr3R_12445001 RAL-223 2717 chr3R 12546416 12546479 chr3R 12546549 12546612 27 133 10.0 12.5 11.2 2.2 196 chr3R 12546416 intron Octbeta3R - chr3R 12546514 intron Octbeta3R - chr3R 12546612 intron Octbeta3R - chr3R_27_12545001 chr3R_12545001 RAL-223 2718 chr3R 12720683 12720757 chr3R 12720903 12720977 36 218 7.5 11.0 9.2 3.5 294 chr3R 12720683 intron Men - chr3R 12720830 intron Men - chr3R 12720977 intron Men - chr3R_36_12720001 chr3R_12720001 RAL-223 2719 chr3R 12725922 12725968 chr3R 12726047 12726123 16 147 7.5 6.0 6.8 2.1 201 chr3R 12725922 intergenic not near genes chr3R 12726022 intergenic not near genes chr3R 12726123 intergenic not near genes chr3R_16_12725001 chr3R_12725001 RAL-223 2720 chr3R 12735130 12735178 chr3R 12735430 12735478 18 299 6.0 9.5 7.8 2.0 348 chr3R 12735130 intergenic not near genes chr3R 12735304 intergenic not near genes chr3R 12735478 intergenic not near genes chr3R_18_12735001 chr3R_12735001 RAL-223 2721 chr3R 12735748 12735823 chr3R 12735896 12735971 23 148 5.0 6.5 5.8 3.4 223 chr3R 12735748 intergenic not near genes chr3R 12735860 intergenic not near genes chr3R 12735971 intergenic not near genes chr3R_23_12735001 chr3R_12735001 RAL-223 2722 chr3R 12763060 12763151 chr3R 12763198 12763278 21 134 1.0 5.0 3.0 5.2 218 chr3R 12763060 intron beat-Vc - chr3R 12763169 intron beat-Vc - chr3R 12763278 intron beat-Vc - chr3R_21_12760001 chr3R_12760001 RAL-223 2723 chr3R 12766378 12766433 chr3R 12766494 12766567 21 124 3.5 10.0 6.8 2.7 189 chr3R 12766378 intron beat-Vc - chr3R 12766472 intron beat-Vc - chr3R 12766567 intron beat-Vc - chr3R_21_12765001 chr3R_12765001 RAL-223 2724 chr3R 12818981 12819051 chr3R 12819114 12819185 23 132 7.5 5.5 6.5 3.1 204 chr3R 12818981 intergenic not near genes chr3R 12819083 intergenic not near genes chr3R 12819185 intergenic not near genes chr3R_23_12815001 chr3R_12815001 RAL-223 2725 chr3R 12825780 12825848 chr3R 12825910 12825978 16 128 6.0 5.0 5.5 2.5 198 chr3R 12825780 intergenic not near genes chr3R 12825879 intergenic not near genes chr3R 12825978 intergenic not near genes chr3R_16_12825001 chr3R_12825001 RAL-223 2726 chr3R 12864521 12864576 chr3R 12865056 12865111 roo 12 535 6.5 5.5 6.0 1.7 590 chr3R 12864521 intergenic not near genes chr3R 12864816 intergenic not near genes chr3R 12865111 intergenic not near genes chr3R_12_12860001 chr3R_12860001 RAL-223 2727 chr3R 12866440 12866513 chr3R 12866641 12866714 29 200 9.0 7.5 8.2 3.2 274 chr3R 12866440 intergenic not near genes chr3R 12866577 intergenic not near genes chr3R 12866714 intergenic not near genes chr3R_29_12865001 chr3R_12865001 RAL-223 2728 chr3R 12883743 12883820 chr3R 12883912 12883978 28 167 4.0 5.5 4.8 4.8 235 chr3R 12883743 intergenic not near genes chr3R 12883860 intergenic not near genes chr3R 12883978 intergenic not near genes chr3R_28_12880001 chr3R_12880001 RAL-223 2729 chr3R 12885055 12885133 chr3R 12885212 12885290 25 157 5.0 6.5 5.8 3.7 235 chr3R 12885055 intergenic not near genes chr3R 12885172 intergenic not near genes chr3R 12885290 intergenic not near genes chr3R_25_12885001 chr3R_12885001 RAL-223 2730 chr3R 12894590 12894624 chr3R 12894753 12894789 6 163 0.0 6.0 3.0 1.5 199 chr3R 12894590 intergenic not near genes chr3R 12894690 intergenic not near genes chr3R 12894789 intergenic not near genes chr3R_6_12890001 chr3R_12890001 RAL-223 2731 chr3R 12920124 12920138 chr3R 12925377 12925391 copia 11 5251 18.0 9.0 13.5 0.8 5267 chr3R 12920124 intron beat-Vb + chr3R 12922758 intron beat-Vb + chr3R 12925391 intron beat-Vb + chr3R_11_12920001 chr3R_12920001 RAL-223 2732 chr3R 12920140 12920176 chr3R 12925374 12925429 copia 14 5244 8.0 8.0 8.0 1.6 5289 chr3R 12920140 intron beat-Vb + chr3R 12922784 intron beat-Vb + chr3R 12925429 intron beat-Vb + chr3R_14_12920001 chr3R_12920001 RAL-223 2733 chr3R 12935307 12935320 chr3R 12935460 12935474 7 154 13.5 0.0 6.8 0.9 167 chr3R 12935307 intergenic beat-Vb + chr3R 12935390 intergenic not near genes chr3R 12935474 intergenic not near genes chr3R_7_12935001 chr3R_12935001 RAL-223 2734 chr3R 12947245 12947318 chr3R 12947457 12947530 24 210 5.5 9.0 7.2 2.9 285 chr3R 12947245 intergenic not near genes chr3R 12947388 intergenic not near genes chr3R 12947530 intergenic not near genes chr3R_24_12945001 chr3R_12945001 RAL-223 2735 chr3R 12951194 12951200 chr3R 12951322 12951328 4 128 7.5 15.5 11.5 0.3 134 chr3R 12951194 intron grsm - chr3R 12951261 intron grsm - chr3R 12951328 intron grsm - chr3R_4_12950001 chr3R_12950001 RAL-223 2736 chr3R 12972506 12972583 chr3R 12972695 12972772 24 189 5.5 7.5 6.5 3.2 266 chr3R 12972506 intron CG7381 - chr3R 12972639 intron CG7381 - chr3R 12972772 intron CG7381 - chr3R_24_12970001 chr3R_12970001 RAL-223 2737 chr3R 13059912 13059959 chr3R 13060157 13060204 16 245 9.0 4.0 6.5 2.1 292 chr3R 13059912 intron sim + chr3R 13060058 intron sim + chr3R 13060204 intron sim + chr3R_16_13060001 chr3R_13060001 RAL-223 2738 chr3R 13064738 13064792 chr3R 13064887 13064939 9 145 0.0 0.0 0.0 9.0 201 chr3R 13064738 intron sim + chr3R 13064838 intron sim + chr3R 13064939 intron sim + chr3R_9_13060001 chr3R_13060001 RAL-223 2739 chr3R 13066961 13067009 chr3R 13067098 13067146 17 137 9.5 8.0 8.8 1.7 185 chr3R 13066961 intron sim + chr3R 13067054 intron sim + chr3R 13067146 intron sim + chr3R_17_13065001 chr3R_13065001 RAL-223 2740 chr3R 13067808 13067868 chr3R 13067921 13067938 22 125 7.0 11.5 9.2 2.2 130 chr3R 13067808 intron sim + chr3R 13067873 intron sim + chr3R 13067938 intron sim + chr3R_22_13065001 chr3R_13065001 RAL-223 2741 chr3R 13075315 13075376 chr3R 13075446 13075507 14 131 9.5 4.0 6.8 1.8 192 chr3R 13075315 intron sim + chr3R 13075411 intron sim + chr3R 13075507 intron sim + chr3R_14_13075001 chr3R_13075001 RAL-223 2742 chr3R 13135789 13135841 chr3R 13138004 13138056 pogo 11 2215 7.0 7.5 7.2 1.3 2267 chr3R 13135789 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136922 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138056 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_11_13135001 chr3R_13135001 RAL-223 2743 chr3R 13138266 13138351 chr3R 13138411 13138489 17 140 3.0 7.5 5.2 2.7 223 chr3R 13138266 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138378 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138489 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_17_13135001 chr3R_13135001 RAL-223 2744 chr3R 13142989 13143064 chr3R 13148615 13148645 mdg3 32 5624 5.0 6.5 5.8 4.7 5656 chr3R 13142989 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145817 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148645 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_32_13145001 chr3R_13145001 RAL-223 2745 chr3R 13151321 13151390 chr3R 13151501 13151564 10 174 0.0 8.5 4.2 1.9 243 chr3R 13151321 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151442 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151564 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13150001 chr3R_13150001 RAL-223 2746 chr3R 13314054 13314118 chr3R 13318890 13318956 Doc 18 4836 4.0 12.0 8.0 2.0 4902 chr3R 13314054 intergenic not near genes chr3R 13316505 intergenic not near genes chr3R 13318956 intergenic CG45080 - chr3R_18_13315001 chr3R_13315001 RAL-223 2747 chr3R 13348968 13349014 chr3R 13349094 13349140 5 126 9.5 10.0 9.8 0.5 172 chr3R 13348968 intergenic not near genes chr3R 13349054 intergenic not near genes chr3R 13349140 intergenic not near genes chr3R_5_13345001 chr3R_13345001 RAL-223 2748 chr3R 13376227 13376295 chr3R 13376366 13376434 28 138 9.0 9.5 9.2 2.7 207 chr3R 13376227 intron CG9813 - chr3R 13376330 intron CG9813 - chr3R 13376434 intron CG9813 - chr3R_28_13375001 chr3R_13375001 RAL-223 2749 chr3R 13380675 13380745 chr3R 13380813 13380883 32 138 16.5 7.0 11.8 2.5 208 chr3R 13380675 exon CG8870 + chr3R 13380779 exon CG8870 + chr3R 13380883 intron CG8870 + chr3R_32_13380001 chr3R_13380001 RAL-223 2750 chr3R 13418616 13418681 chr3R 13418742 13418807 26 126 10.0 4.5 7.2 3.2 191 chr3R 13418616 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418807 intergenic not near genes chr3R_26_13415001 chr3R_13415001 RAL-223 2751 chr3R 13517182 13517258 chr3R 13520049 13520124 jockey 11 2865 6.0 0.0 3.0 2.8 2942 chr3R 13517182 intergenic not near genes chr3R 13518653 intergenic not near genes chr3R 13520124 intergenic not near genes chr3R_11_13515001 chr3R_13515001 RAL-223 2752 chr3R 13580796 13580830 chr3R 13580929 13580963 11 133 19.0 13.5 16.2 0.6 167 chr3R 13580796 intergenic not near genes chr3R 13580880 intergenic not near genes chr3R 13580963 intergenic not near genes chr3R_11_13580001 chr3R_13580001 RAL-223 2753 chr3R 13599168 13599241 chr3R 13599329 13599402 16 161 3.5 12.0 7.8 1.8 234 chr3R 13599168 intergenic not near genes chr3R 13599285 intergenic not near genes chr3R 13599402 intergenic not near genes chr3R_16_13595001 chr3R_13595001 RAL-223 2754 chr3R 13603013 13603062 chr3R 13603154 13603203 23 141 9.0 7.0 8.0 2.6 190 chr3R 13603013 intergenic not near genes chr3R 13603108 intergenic not near genes chr3R 13603203 intergenic not near genes chr3R_23_13600001 chr3R_13600001 RAL-223 2755 chr3R 13672896 13672927 chr3R 13673024 13673055 16 126 18.5 9.5 14.0 1.1 159 chr3R 13672896 intron Task6 - chr3R 13672976 intron Task6 - chr3R 13673055 intron Task6 - chr3R_16_13670001 chr3R_13670001 RAL-223 2756 chr3R 13672928 13672964 chr3R 13673021 13673092 18 124 9.5 9.5 9.5 1.7 164 chr3R 13672928 intron Task6 - chr3R 13673010 intron Task6 - chr3R 13673092 intron Task6 - chr3R_18_13670001 chr3R_13670001 RAL-223 2757 chr3R 13728487 13728492 chr3R 13728614 13728614 4 126 20.0 1.0 10.5 0.3 127 chr3R 13728487 intron CG34383 + chr3R 13728550 intron CG34383 + chr3R 13728614 intron CG34383 + chr3R_4_13725001 chr3R_13725001 RAL-223 2758 chr3R 13801288 13801351 chr3R 13801417 13801466 23 126 11.0 10.0 10.5 2.0 178 chr3R 13801288 intergenic not near genes chr3R 13801377 intergenic not near genes chr3R 13801466 intergenic not near genes chr3R_23_13800001 chr3R_13800001 RAL-223 2759 chr3R 13803852 13803863 chr3R 13804116 13804127 6 263 17.5 0.0 8.8 0.6 275 chr3R 13803852 intergenic not near genes chr3R 13803990 intergenic not near genes chr3R 13804127 intergenic not near genes chr3R_6_13800001 chr3R_13800001 RAL-223 2760 chr3R 13830710 13830780 chr3R 13830924 13830994 21 213 6.0 10.0 8.0 2.3 284 chr3R 13830710 intergenic not near genes chr3R 13830852 intergenic not near genes chr3R 13830994 intergenic not near genes chr3R_21_13830001 chr3R_13830001 RAL-223 2761 chr3R 13850268 13850342 chr3R 13850407 13850480 19 142 0.0 6.5 3.2 4.5 212 chr3R 13850268 intergenic not near genes chr3R 13850374 intergenic not near genes chr3R 13850480 intergenic not near genes chr3R_19_13850001 chr3R_13850001 RAL-223 2762 chr3R 13863646 13863700 chr3R 13863773 13863838 20 134 10.5 10.5 10.5 1.7 192 chr3R 13863646 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863838 intergenic not near genes chr3R_20_13860001 chr3R_13860001 RAL-223 2763 chr3R 13864344 13864415 chr3R 13864472 13864543 16 128 6.5 0.0 3.2 3.8 199 chr3R 13864344 intergenic not near genes chr3R 13864444 intergenic not near genes chr3R 13864543 intergenic not near genes chr3R_16_13860001 chr3R_13860001 RAL-223 2764 chr3R 13909866 13909909 chr3R 13909995 13910038 19 129 7.0 14.0 10.5 1.7 172 chr3R 13909866 intergenic not near genes chr3R 13909952 intergenic not near genes chr3R 13910038 intergenic not near genes chr3R_19_13905001 chr3R_13905001 RAL-223 2765 chr3R 13974470 13974488 chr3R 13974597 13974615 8 127 4.5 10.0 7.2 1.0 145 chr3R 13974470 intron,5` UTR rdx -,CR43460 + chr3R 13974542 intron,5` UTR rdx -,CR43460 + chr3R 13974615 intron,5` UTR rdx -,CR43460 + chr3R_8_13970001 chr3R_13970001 RAL-223 2766 chr3R 13975335 13975404 chr3R 13975465 13975534 22 130 6.5 9.5 8.0 2.4 199 chr3R 13975335 intron rdx - chr3R 13975434 intron rdx - chr3R 13975534 intron rdx - chr3R_22_13975001 chr3R_13975001 RAL-223 2767 chr3R 14013481 14013536 chr3R 14013842 14013897 18 361 12.5 6.0 9.2 1.8 416 chr3R 14013481 intron rdx - chr3R 14013689 intron rdx - chr3R 14013897 intron rdx - chr3R_18_14010001 chr3R_14010001 RAL-223 2768 chr3R 14035260 14035335 chr3R 14035391 14035466 27 131 8.0 10.5 9.2 2.6 206 chr3R 14035260 exon CG9922 - chr3R 14035363 intron CG9922 - chr3R 14035466 exon CG9922 - chr3R_27_14035001 chr3R_14035001 RAL-223 2769 chr3R 14037537 14037589 chr3R 14037665 14037674 22 123 10.5 13.5 12.0 1.7 137 chr3R 14037537 intergenic not near genes chr3R 14037606 intergenic not near genes chr3R 14037674 intergenic not near genes chr3R_22_14035001 chr3R_14035001 RAL-223 2770 chr3R 14058079 14058146 chr3R 14058249 14058316 31 170 12.0 5.0 8.5 3.3 237 chr3R 14058079 5` UTR foxo + chr3R 14058198 intron foxo + chr3R 14058316 intron foxo + chr3R_31_14055001 chr3R_14055001 RAL-223 2771 chr3R 14089537 14089541 chr3R 14089676 14089680 6 139 10.0 7.5 8.8 0.6 143 chr3R 14089537 5` UTR Npc2b + chr3R 14089608 intron Npc2b + chr3R 14089680 intron Npc2b + chr3R_6_14085001 chr3R_14085001 RAL-223 2772 chr3R 14117396 14117415 chr3R 14117522 14117541 4 126 16.5 10.0 13.2 0.3 145 chr3R 14117396 intron Kif19A - chr3R 14117468 intron Kif19A - chr3R 14117541 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-223 2773 chr3R 14170106 14170167 chr3R 14170246 14170307 32 140 10.0 9.5 9.8 3.0 201 chr3R 14170106 3` UTR Dop1R1 - chr3R 14170206 3` UTR Dop1R1 - chr3R 14170307 3` UTR Dop1R1 - chr3R_32_14170001 chr3R_14170001 RAL-223 2774 chr3R 14180767 14180830 chr3R 14185582 14185645 F-element 19 4815 13.5 9.5 11.5 1.5 4878 chr3R 14180767 intron Dop1R1 - chr3R 14183206 intron Dop1R1 - chr3R 14185645 intron Dop1R1 - chr3R_19_14180001 chr3R_14180001 RAL-223 2775 chr3R 14194386 14194454 chr3R 14203583 14203653 roo 26 9198 7.0 9.0 8.0 2.9 9267 chr3R 14194386 intron Dop1R1 - chr3R 14199020 intron Dop1R1 - chr3R 14203653 intron Dop1R1 - chr3R_26_14195001 chr3R_14195001 RAL-223 2776 chr3R 14236893 14236928 chr3R 14244437 14244472 Idefix 5 7544 9.5 7.5 8.5 0.5 7579 chr3R 14236893 exon CG43291 - chr3R 14240682 intron CG43291 - chr3R 14244472 intron CG43291 - chr3R_5_14240001 chr3R_14240001 RAL-223 2777 chr3R 14246360 14246418 chr3R 14247886 14247964 jockey 17 1543 13.5 5.5 9.5 1.6 1604 chr3R 14246360 intergenic not near genes chr3R 14247162 intergenic not near genes chr3R 14247964 intergenic not near genes chr3R_17_14245001 chr3R_14245001 RAL-223 2778 chr3R 14256731 14256769 chr3R 14256867 14256905 18 135 10.0 11.5 10.8 1.5 174 chr3R 14256731 intron,exon Aats-met -,CG43179 + chr3R 14256818 intron,3` UTR Aats-met -,CG43179 + chr3R 14256905 intron,3` UTR Aats-met -,CG43179 + chr3R_18_14255001 chr3R_14255001 RAL-223 2779 chr3R 14364014 14364023 chr3R 14364140 14364149 7 126 26.5 10.5 18.5 0.4 135 chr3R 14364014 intron NK7.1 - chr3R 14364082 intron NK7.1 - chr3R 14364149 intron NK7.1 - chr3R_7_14360001 chr3R_14360001 RAL-223 2780 chr3R 14364024 14364092 chr3R 14364138 14364211 28 122 12.5 11.0 11.8 2.2 187 chr3R 14364024 intron NK7.1 - chr3R 14364118 intron NK7.1 - chr3R 14364211 intron NK7.1 - chr3R_28_14360001 chr3R_14360001 RAL-223 2781 chr3R 14406356 14406406 chr3R 14406513 14406563 30 157 2.0 7.0 4.5 5.5 207 chr3R 14406356 intron cv-c - chr3R 14406460 intron cv-c - chr3R 14406563 intron cv-c - chr3R_30_14405001 chr3R_14405001 RAL-223 2782 chr3R 14504450 14504514 chr3R 14504839 14504912 27 397 7.5 9.0 8.2 2.9 462 chr3R 14504450 intron CR44177 + chr3R 14504681 intron CR44177 + chr3R 14504912 intron CR44177 + chr3R_27_14500001 chr3R_14500001 RAL-223 2783 chr3R 14527354 14527413 chr3R 14527481 14527540 22 127 13.5 9.0 11.2 1.8 186 chr3R 14527354 intron Pde6 - chr3R 14527447 intron Pde6 - chr3R 14527540 intron Pde6 - chr3R_22_14525001 chr3R_14525001 RAL-223 2784 chr3R 14533584 14533592 chr3R 14533722 14533730 4 138 0.0 20.5 10.2 0.4 146 chr3R 14533584 intron Pde6 - chr3R 14533657 intron Pde6 - chr3R 14533730 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-223 2785 chr3R 14543553 14543627 chr3R 14543683 14543752 28 130 12.5 8.5 10.5 2.4 199 chr3R 14543553 intron Pde6 - chr3R 14543652 intron Pde6 - chr3R 14543752 intron Pde6 - chr3R_28_14540001 chr3R_14540001 RAL-223 2786 chr3R 14545994 14546050 chr3R 14546121 14546177 11 127 11.5 1.5 6.5 1.5 183 chr3R 14545994 intron Pde6 - chr3R 14546086 intron Pde6 - chr3R 14546177 intron Pde6 - chr3R_11_14545001 chr3R_14545001 RAL-223 2787 chr3R 14577917 14577981 chr3R 14578078 14578147 28 166 7.0 10.5 8.8 2.9 230 chr3R 14577917 intron stumps + chr3R 14578032 intron stumps + chr3R 14578147 intron stumps + chr3R_28_14575001 chr3R_14575001 RAL-223 2788 chr3R 14579314 14579363 chr3R 14579453 14579502 17 138 17.0 12.0 14.5 1.1 188 chr3R 14579314 intron stumps + chr3R 14579408 intron stumps + chr3R 14579502 intron stumps + chr3R_17_14575001 chr3R_14575001 RAL-223 2789 chr3R 14608425 14608474 chr3R 14608564 14608616 20 142 6.5 7.0 6.8 2.6 191 chr3R 14608425 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608616 intergenic not near genes chr3R_20_14605001 chr3R_14605001 RAL-223 2790 chr3R 14617327 14617354 chr3R 14617460 14617484 9 131 12.0 16.5 14.2 0.6 157 chr3R 14617327 exon CG14853 + chr3R 14617406 exon CG14853 + chr3R 14617484 exon CG14853 + chr3R_9_14615001 chr3R_14615001 RAL-223 2791 chr3R 14688111 14688121 chr3R 14688242 14688252 5 131 11.5 0.0 5.8 0.7 141 chr3R 14688111 intron Meltrin - chr3R 14688182 intron Meltrin - chr3R 14688252 intron Meltrin - chr3R_5_14685001 chr3R_14685001 RAL-223 2792 chr3R 14738134 14738204 chr3R 14738404 14738478 22 269 6.5 3.5 5.0 3.7 344 chr3R 14738134 intron eff - chr3R 14738306 intron eff - chr3R 14738478 intron eff - chr3R_22_14735001 chr3R_14735001 RAL-223 2793 chr3R 14778426 14778509 chr3R 14778567 14778650 28 140 7.5 7.0 7.2 3.4 224 chr3R 14778426 intron jvl + chr3R 14778538 intron jvl + chr3R 14778650 intron jvl + chr3R_28_14775001 chr3R_14775001 RAL-223 2794 chr3R 14783460 14783526 chr3R 14783608 14783676 42 150 9.5 5.5 7.5 4.9 216 chr3R 14783460 intron jvl + chr3R 14783568 intron jvl + chr3R 14783676 intron jvl + chr3R_42_14780001 chr3R_14780001 RAL-223 2795 chr3R 14874331 14874364 chr3R 14874460 14874473 7 124 6.5 8.5 7.5 0.8 142 chr3R 14874331 intron btsz - chr3R 14874402 intron btsz - chr3R 14874473 intron btsz - chr3R_7_14870001 chr3R_14870001 RAL-223 2796 chr3R 14923668 14923736 chr3R 14923794 14923863 25 126 6.5 11.0 8.8 2.6 195 chr3R 14923668 3` UTR CR45598 - chr3R 14923766 intergenic CR45598 - chr3R 14923863 intergenic CR45598 - chr3R_25_14920001 chr3R_14920001 RAL-223 2797 chr3R 14925566 14925624 chr3R 14925699 14925757 24 133 10.0 6.5 8.2 2.6 191 chr3R 14925566 intergenic not near genes chr3R 14925662 intergenic not near genes chr3R 14925757 intergenic not near genes chr3R_24_14925001 chr3R_14925001 RAL-223 2798 chr3R 14944850 14944895 chr3R 14944981 14945013 20 128 15.5 9.5 12.5 1.5 163 chr3R 14944850 intergenic not near genes chr3R 14944932 intergenic not near genes chr3R 14945013 intergenic not near genes chr3R_20_14940001 chr3R_14940001 RAL-223 2799 chr3R 14954769 14954831 chr3R 14955031 14955093 32 261 10.5 12.5 11.5 2.6 324 chr3R 14954769 intergenic not near genes chr3R 14954931 intergenic not near genes chr3R 14955093 intergenic not near genes chr3R_32_14950001 chr3R_14950001 RAL-223 2800 chr3R 14983976 14984002 chr3R 14984133 14984159 23 156 13.5 13.5 13.5 1.6 183 chr3R 14983976 intergenic not near genes chr3R 14984068 intergenic not near genes chr3R 14984159 intergenic not near genes chr3R_23_14980001 chr3R_14980001 RAL-223 2801 chr3R 14984004 14984036 chr3R 14984121 14984193 18 154 6.0 10.5 8.2 2.0 189 chr3R 14984004 intergenic not near genes chr3R 14984098 intergenic not near genes chr3R 14984193 intergenic not near genes chr3R_18_14980001 chr3R_14980001 RAL-223 2802 chr3R 14994543 14994554 chr3R 14994682 14994691 9 138 18.5 7.5 13.0 0.6 148 chr3R 14994543 intergenic not near genes chr3R 14994617 intergenic not near genes chr3R 14994691 intergenic not near genes chr3R_9_14990001 chr3R_14990001 RAL-223 2803 chr3R 14994565 14994614 chr3R 14994678 14994752 17 135 7.0 7.0 7.0 2.1 187 chr3R 14994565 intergenic not near genes chr3R 14994658 intergenic not near genes chr3R 14994752 intergenic not near genes chr3R_17_14990001 chr3R_14990001 RAL-223 2804 chr3R 15041402 15041449 chr3R 15045220 15045264 Doc 21 3818 2.5 14.5 8.5 2.2 3862 chr3R 15041402 intergenic not near genes chr3R 15043333 intergenic not near genes chr3R 15045264 intergenic not near genes chr3R_21_15040001 chr3R_15040001 RAL-223 2805 chr3R 15049412 15049473 chr3R 15049588 15049649 22 176 9.0 5.5 7.2 2.7 237 chr3R 15049412 intergenic not near genes chr3R 15049530 intergenic not near genes chr3R 15049649 intergenic not near genes chr3R_22_15045001 chr3R_15045001 RAL-223 2806 chr3R 15059239 15059247 chr3R 15059500 15059508 BS 7 261 0.5 4.5 2.5 2.0 269 chr3R 15059239 intron dpr9 - chr3R 15059374 intron dpr9 - chr3R 15059508 intron dpr9 - chr3R_7_15055001 chr3R_15055001 RAL-223 2807 chr3R 15075834 15075877 chr3R 15075961 15076004 12 125 10.5 0.5 5.5 1.8 170 chr3R 15075834 intron dpr9 - chr3R 15075919 intron dpr9 - chr3R 15076004 intron dpr9 - chr3R_12_15075001 chr3R_15075001 RAL-223 2808 chr3R 15079756 15079838 chr3R 15080047 15080122 pogo 25 288 9.5 0.0 4.8 4.3 366 chr3R 15079756 3` UTR CG6966 - chr3R 15079939 3` UTR CG6966 - chr3R 15080122 3` UTR CG6966 - chr3R_25_15075001 chr3R_15075001 RAL-223 2809 chr3R 15087183 15087209 chr3R 15087311 15087337 5 128 17.0 8.5 12.8 0.4 154 chr3R 15087183 intron CG6966 - chr3R 15087260 intron CG6966 - chr3R 15087337 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-223 2810 chr3R 15087213 15087223 chr3R 15087309 15087351 5 121 13.0 8.5 10.8 0.4 138 chr3R 15087213 intron CG6966 - chr3R 15087282 intron CG6966 - chr3R 15087351 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-223 2811 chr3R 15091870 15091941 chr3R 15092227 15092298 25 354 7.0 7.0 7.0 3.1 428 chr3R 15091870 intron CG6966 - chr3R 15092084 intron CG6966 - chr3R 15092298 intron CG6966 - chr3R_25_15090001 chr3R_15090001 RAL-223 2812 chr3R 15102469 15102530 chr3R 15109775 15109834 412 12 7306 6.0 8.0 7.0 1.5 7365 chr3R 15102469 intron CG42788 - chr3R 15106152 intron CG42788 - chr3R 15109834 intron CG42788 - chr3R_12_15105001 chr3R_15105001 RAL-223 2813 chr3R 15114862 15114895 chr3R 15114989 15115022 8 126 16.0 6.5 11.2 0.7 160 chr3R 15114862 intron CG42788 - chr3R 15114942 intron CG42788 - chr3R 15115022 intron CG42788 - chr3R_8_15110001 chr3R_15110001 RAL-223 2814 chr3R 15127736 15127802 chr3R 15127862 15127932 8 130 1.5 4.0 2.8 2.1 196 chr3R 15127736 intron CG42788 - chr3R 15127834 intron CG42788 - chr3R 15127932 intron CG42788 - chr3R_8_15125001 chr3R_15125001 RAL-223 2815 chr3R 15132025 15132065 chr3R 15135135 15135175 Juan 14 3110 11.5 13.5 12.5 1.0 3150 chr3R 15132025 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135175 3` UTR CG6912 - chr3R_14_15130001 chr3R_15130001 RAL-223 2816 chr3R 15156560 15156628 chr3R 15156691 15156759 19 130 7.0 11.0 9.0 1.9 199 chr3R 15156560 intron Gyc88E + chr3R 15156660 intron Gyc88E + chr3R 15156759 intron Gyc88E + chr3R_19_15155001 chr3R_15155001 RAL-223 2817 chr3R 15158487 15158560 chr3R 15158695 15158768 18 205 6.0 4.0 5.0 3.0 281 chr3R 15158487 intron Gyc88E + chr3R 15158628 intron Gyc88E + chr3R 15158768 intron Gyc88E + chr3R_18_15155001 chr3R_15155001 RAL-223 2818 chr3R 15159289 15159301 chr3R 15159422 15159434 6 133 16.0 12.0 14.0 0.4 145 chr3R 15159289 intron Gyc88E + chr3R 15159362 intron Gyc88E + chr3R 15159434 intron Gyc88E + chr3R_6_15155001 chr3R_15155001 RAL-223 2819 chr3R 15159304 15159357 chr3R 15159421 15159421 23 129 6.0 11.5 8.8 2.3 117 chr3R 15159304 intron Gyc88E + chr3R 15159362 intron Gyc88E + chr3R 15159421 intron Gyc88E + chr3R_23_15155001 chr3R_15155001 RAL-223 2820 chr3R 15160591 15160651 chr3R 15160712 15160782 15 130 6.0 10.0 8.0 1.7 191 chr3R 15160591 intron Gyc88E + chr3R 15160686 intron Gyc88E + chr3R 15160782 intron Gyc88E + chr3R_15_15160001 chr3R_15160001 RAL-223 2821 chr3R 15162500 15162558 chr3R 15167318 15167376 F-element 14 4818 10.5 7.0 8.8 1.4 4876 chr3R 15162500 intron Gyc88E + chr3R 15164938 intron Gyc88E + chr3R 15167376 intron Gyc88E + chr3R_14_15160001 chr3R_15160001 RAL-223 2822 chr3R 15167784 15167831 chr3R 15167981 15168038 27 207 8.0 6.5 7.2 3.3 254 chr3R 15167784 intron Gyc88E + chr3R 15167911 intron Gyc88E + chr3R 15168038 intron Gyc88E + chr3R_27_15165001 chr3R_15165001 RAL-223 2823 chr3R 15177717 15177744 chr3R 15177850 15177877 9 132 4.5 0.0 2.2 2.8 160 chr3R 15177717 intron,intron Gyc88E +,Mf - chr3R 15177797 intron,intron Gyc88E +,Mf - chr3R 15177877 intron,intron Gyc88E +,Mf - chr3R_9_15175001 chr3R_15175001 RAL-223 2824 chr3R 15224324 15224401 chr3R 15224515 15224592 39 190 10.5 8.5 9.5 3.7 268 chr3R 15224324 exon CG31344 - chr3R 15224458 intron CG31344 - chr3R 15224592 intron CG31344 - chr3R_39_15220001 chr3R_15220001 RAL-223 2825 chr3R 15410323 15410397 chr3R 15410455 15410529 30 130 8.5 9.5 9.0 3.0 206 chr3R 15410323 intron Atx2 + chr3R 15410426 intron Atx2 + chr3R 15410529 intron Atx2 + chr3R_30_15410001 chr3R_15410001 RAL-223 2826 chr3R 15452226 15452309 chr3R 15452353 15452384 11 122 7.0 7.0 7.0 1.4 158 chr3R 15452226 intron AdamTS-A - chr3R 15452305 intron AdamTS-A - chr3R 15452384 intron AdamTS-A - chr3R_11_15450001 chr3R_15450001 RAL-223 2827 chr3R 15594654 15594676 chr3R 15594787 15594809 12 133 0.0 18.5 9.2 1.2 155 chr3R 15594654 intergenic not near genes chr3R 15594732 intergenic not near genes chr3R 15594809 intergenic not near genes chr3R_12_15590001 chr3R_15590001 RAL-223 2828 chr3R 15601125 15601189 chr3R 15608697 15608761 412 20 7571 11.0 10.5 10.8 1.7 7636 chr3R 15601125 intergenic not near genes chr3R 15604943 intergenic not near genes chr3R 15608761 intergenic not near genes chr3R_20_15600001 chr3R_15600001 RAL-223 2829 chr3R 15618684 15618756 chr3R 15626208 15626280 blood 31 7523 4.0 10.0 7.0 3.9 7596 chr3R 15618684 intergenic not near genes chr3R 15622482 intergenic not near genes chr3R 15626280 intergenic not near genes chr3R_31_15620001 chr3R_15620001 RAL-223 2830 chr3R 15635184 15635237 chr3R 15635353 15635397 16 165 1.0 13.0 7.0 2.0 213 chr3R 15635184 intergenic CG43335 + chr3R 15635290 intergenic CG43335 + chr3R 15635397 intergenic CG43335 + chr3R_16_15635001 chr3R_15635001 RAL-223 2831 chr3R 15734143 15734190 chr3R 15734284 15734331 13 138 7.0 13.5 10.2 1.2 188 chr3R 15734143 intergenic not near genes chr3R 15734237 intergenic not near genes chr3R 15734331 intergenic not near genes chr3R_13_15730001 chr3R_15730001 RAL-223 2832 chr3R 15735193 15735237 chr3R 15739963 15740007 F-element 12 4770 3.0 6.5 4.8 2.1 4814 chr3R 15735193 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15740007 intergenic not near genes chr3R_12_15735001 chr3R_15735001 RAL-223 2833 chr3R 15817229 15817280 chr3R 15818281 15818332 22 1051 0.5 9.0 4.8 3.8 1103 chr3R 15817229 intron alpha-Man-IIb + chr3R 15817780 intron alpha-Man-IIb + chr3R 15818332 intron alpha-Man-IIb + chr3R_22_15815001 chr3R_15815001 RAL-223 2834 chr3R 15867422 15867488 chr3R 15867556 15867622 32 134 8.5 10.0 9.2 3.1 200 chr3R 15867422 intron CG31183 - chr3R 15867522 intron CG31183 - chr3R 15867622 intron CG31183 - chr3R_32_15865001 chr3R_15865001 RAL-223 2835 chr3R 15878051 15878102 chr3R 15878189 15878240 26 138 5.0 10.5 7.8 3.0 189 chr3R 15878051 intergenic not near genes chr3R 15878146 intergenic not near genes chr3R 15878240 intergenic not near genes chr3R_26_15875001 chr3R_15875001 RAL-223 2836 chr3R 15891613 15891687 chr3R 15892055 15892129 40 440 5.0 7.5 6.2 5.6 516 chr3R 15891613 intron CG14877 - chr3R 15891871 intron CG14877 - chr3R 15892129 intron CG14877 - chr3R_40_15890001 chr3R_15890001 RAL-223 2837 chr3R 15924875 15924951 chr3R 15925013 15925089 5 138 15.0 4.5 9.8 0.5 214 chr3R 15924875 intron CG4221 + chr3R 15924982 intron CG4221 + chr3R 15925089 intron CG4221 + chr3R_5_15920001 chr3R_15920001 RAL-223 2838 chr3R 15937378 15937447 chr3R 15937515 15937562 19 134 7.0 6.0 6.5 2.5 184 chr3R 15937378 intron Sap47 + chr3R 15937470 intron Sap47 + chr3R 15937562 intron Sap47 + chr3R_19_15935001 chr3R_15935001 RAL-223 2839 chr3R 16035103 16035180 chr3R 16035234 16035305 32 130 6.0 7.0 6.5 4.3 202 chr3R 16035103 intron pnr + chr3R 16035204 intron pnr + chr3R 16035305 intron pnr + chr3R_32_16035001 chr3R_16035001 RAL-223 2840 chr3R 16189363 16189428 chr3R 16189816 16189881 invader4 31 453 12.0 6.0 9.0 3.1 518 chr3R 16189363 intron sra + chr3R 16189622 intron sra + chr3R 16189881 intron sra + chr3R_31_16185001 chr3R_16185001 RAL-223 2841 chr3R 16226769 16226774 chr3R 16226888 16226902 5 126 11.5 13.0 12.2 0.4 133 chr3R 16226769 intron tara + chr3R 16226836 intron tara + chr3R 16226902 intron tara + chr3R_5_16225001 chr3R_16225001 RAL-223 2842 chr3R 16246472 16246551 chr3R 16246598 16246677 19 126 8.0 6.0 7.0 2.4 205 chr3R 16246472 intron tara + chr3R 16246574 intron tara + chr3R 16246677 intron tara + chr3R_19_16245001 chr3R_16245001 RAL-223 2843 chr3R 16253485 16253568 chr3R 16253621 16253703 22 135 3.0 3.0 3.0 5.5 218 chr3R 16253485 intron tara + chr3R 16253594 intron tara + chr3R 16253703 intron tara + chr3R_22_16250001 chr3R_16250001 RAL-223 2844 chr3R 16275539 16275602 chr3R 16275904 16275967 30 363 7.0 9.5 8.2 3.3 428 chr3R 16275539 intron gish + chr3R 16275753 intron gish + chr3R 16275967 intron gish + chr3R_30_16275001 chr3R_16275001 RAL-223 2845 chr3R 16374254 16374323 chr3R 16374421 16374490 23 165 5.5 4.5 5.0 3.8 236 chr3R 16374254 intergenic ss - chr3R 16374372 intergenic ss - chr3R 16374490 3` UTR ss - chr3R_23_16370001 chr3R_16370001 RAL-223 2846 chr3R 16391357 16391399 chr3R 16391487 16391529 5 130 8.0 5.5 6.8 0.6 172 chr3R 16391357 intron ss - chr3R 16391443 intron ss - chr3R 16391529 intron ss - chr3R_5_16390001 chr3R_16390001 RAL-223 2847 chr3R 16472545 16472613 chr3R 16472663 16472681 10 113 14.0 16.5 15.2 0.6 136 chr3R 16472545 intergenic Gyc-89Da + chr3R 16472613 5` UTR Gyc-89Da + chr3R 16472681 5` UTR Gyc-89Da + chr3R_10_16470001 chr3R_16470001 RAL-223 2848 chr3R 16552777 16552835 chr3R 16552913 16552971 27 135 13.5 9.0 11.2 2.2 194 chr3R 16552777 intron CG42342 + chr3R 16552874 intron CG42342 + chr3R 16552971 intron CG42342 + chr3R_27_16550001 chr3R_16550001 RAL-223 2849 chr3R 16582862 16582910 chr3R 16582991 16583032 24 128 6.5 9.5 8.0 2.7 170 chr3R 16582862 intron Scp2 - chr3R 16582947 intron Scp2 - chr3R 16583032 intron Scp2 - chr3R_24_16580001 chr3R_16580001 RAL-223 2850 chr3R 16633647 16633679 chr3R 16633796 16633829 5 150 16.0 15.0 15.5 0.3 182 chr3R 16633647 intron Fas1 + chr3R 16633738 intron Fas1 + chr3R 16633829 intron Fas1 + chr3R_5_16630001 chr3R_16630001 RAL-223 2851 chr3R 16671477 16671482 chr3R 16671592 16671607 5 125 17.0 6.0 11.5 0.4 130 chr3R 16671477 intron Ubx - chr3R 16671542 intron Ubx - chr3R 16671607 intron Ubx - chr3R_5_16670001 chr3R_16670001 RAL-223 2852 chr3R 16671484 16671527 chr3R 16671589 16671663 20 127 10.5 6.0 8.2 2.2 179 chr3R 16671484 intron Ubx - chr3R 16671574 intron Ubx - chr3R 16671663 intron Ubx - chr3R_20_16670001 chr3R_16670001 RAL-223 2853 chr3R 16675265 16675337 chr3R 16675429 16675501 32 164 14.0 9.0 11.5 2.6 236 chr3R 16675265 intron Ubx - chr3R 16675383 intron Ubx - chr3R 16675501 intron Ubx - chr3R_32_16675001 chr3R_16675001 RAL-223 2854 chr3R 16708646 16708720 chr3R 16708777 16708851 32 130 6.0 7.5 6.8 4.1 205 chr3R 16708646 intron Ubx - chr3R 16708748 intron Ubx - chr3R 16708851 intron Ubx - chr3R_32_16705001 chr3R_16705001 RAL-223 2855 chr3R 16732112 16732157 chr3R 16732258 16732303 14 146 4.0 0.0 2.0 4.7 191 chr3R 16732112 intron Ubx - chr3R 16732208 intron Ubx - chr3R 16732303 intron Ubx - chr3R_14_16730001 chr3R_16730001 RAL-223 2856 chr3R 16734825 16734893 chr3R 16734958 16735026 11 133 1.5 8.0 4.8 1.9 201 chr3R 16734825 intergenic Ubx - chr3R 16734926 intergenic Ubx - chr3R 16735026 intergenic not near genes chr3R_11_16730001 chr3R_16730001 RAL-223 2857 chr3R 16756280 16756320 chr3R 16762521 16762558 diver 14 6240 12.0 8.5 10.2 1.2 6278 chr3R 16756280 intron bxd - chr3R 16759419 intron bxd - chr3R 16762558 intron bxd - chr3R_14_16755001 chr3R_16755001 RAL-223 2858 chr3R 16756324 16756346 chr3R 16762509 16762587 diver 4 6223 7.5 6.0 6.8 0.5 6263 chr3R 16756324 intron bxd - chr3R 16759456 intron bxd - chr3R 16762587 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-223 2859 chr3R 16802075 16802153 chr3R 16802206 16802280 9 129 2.0 4.5 3.2 2.1 205 chr3R 16802075 intergenic CR45751 + chr3R 16802178 intergenic CR45751 + chr3R 16802280 intergenic CR45751 + chr3R_9_16800001 chr3R_16800001 RAL-223 2860 chr3R 16856561 16856629 chr3R 16856720 16856790 11 159 3.0 2.0 2.5 3.1 229 chr3R 16856561 intron iab-8 - chr3R 16856676 intron iab-8 - chr3R 16856790 intron iab-8 - chr3R_11_16855001 chr3R_16855001 RAL-223 2861 chr3R 16860287 16860335 chr3R 16860415 16860463 18 128 13.0 1.0 7.0 2.2 176 chr3R 16860287 intron iab-8 - chr3R 16860375 intron iab-8 - chr3R 16860463 intron iab-8 - chr3R_18_16860001 chr3R_16860001 RAL-223 2862 chr3R 17120460 17120523 chr3R 17120729 17120798 22 274 10.0 5.5 7.8 2.5 338 chr3R 17120460 intron cher - chr3R 17120629 intron,exon cher -,CG34278 + chr3R 17120798 intron,3` UTR cher -,CG34278 + chr3R_22_17120001 chr3R_17120001 RAL-223 2863 chr3R 17121490 17121549 chr3R 17121730 17121794 22 244 11.5 8.0 9.8 2.0 304 chr3R 17121490 intron cher - chr3R 17121642 intron,exon cher -,CG42779 + chr3R 17121794 intron,3` UTR cher -,CG42779 + chr3R_22_17120001 chr3R_17120001 RAL-223 2864 chr3R 17165963 17166034 chr3R 17166263 17166341 4 305 5.0 0.0 2.5 1.1 378 chr3R 17165963 intron Mur89F - chr3R 17166152 intron Mur89F - chr3R 17166341 intron Mur89F - chr3R_4_17165001 chr3R_17165001 RAL-223 2865 chr3R 17184538 17184753 chr3R 17184686 17184879 42 134 0.5 0.0 0.2 35.0 341 chr3R 17184538 intron Mur89F - chr3R 17184708 intron Mur89F - chr3R 17184879 intron Mur89F - chr3R_42_17180001 chr3R_17180001 RAL-223 2866 chr3R 17209660 17209702 chr3R 17209794 17209840 17 137 14.0 16.5 15.2 1.0 180 chr3R 17209660 intergenic not near genes chr3R 17209750 intergenic not near genes chr3R 17209840 intergenic not near genes chr3R_17_17205001 chr3R_17205001 RAL-223 2867 chr3R 17268627 17268695 chr3R 17268799 17268867 25 171 2.0 11.0 6.5 3.3 240 chr3R 17268627 intergenic not near genes chr3R 17268747 intergenic not near genes chr3R 17268867 intergenic not near genes chr3R_25_17265001 chr3R_17265001 RAL-223 2868 chr3R 17273924 17273992 chr3R 17274081 17274149 23 157 10.0 7.0 8.5 2.4 225 chr3R 17273924 intergenic not near genes chr3R 17274036 intergenic not near genes chr3R 17274149 intergenic not near genes chr3R_23_17270001 chr3R_17270001 RAL-223 2869 chr3R 17290399 17290414 chr3R 17290534 17290550 5 136 18.5 8.5 13.5 0.3 151 chr3R 17290399 intergenic not near genes chr3R 17290474 intergenic not near genes chr3R 17290550 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-223 2870 chr3R 17290415 17290467 chr3R 17290531 17290603 29 135 7.5 8.5 8.0 3.2 188 chr3R 17290415 intergenic not near genes chr3R 17290509 intergenic not near genes chr3R 17290603 intergenic not near genes chr3R_29_17290001 chr3R_17290001 RAL-223 2871 chr3R 17294632 17294705 chr3R 17295099 17295188 BS 8 480 3.5 0.0 1.8 2.9 556 chr3R 17294632 intergenic not near genes chr3R 17294910 intergenic not near genes chr3R 17295188 intergenic not near genes chr3R_8_17290001 chr3R_17290001 RAL-223 2872 chr3R 17346650 17346709 chr3R 17348263 17348322 F-element 22 1612 7.5 13.0 10.2 2.0 1672 chr3R 17346650 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348322 intron beat-IIa - chr3R_22_17345001 chr3R_17345001 RAL-223 2873 chr3R 17354780 17354818 chr3R 17354962 17355000 7 182 4.0 5.0 4.5 1.3 220 chr3R 17354780 intron beat-IIa - chr3R 17354890 intron beat-IIa - chr3R 17355000 intron beat-IIa - chr3R_7_17350001 chr3R_17350001 RAL-223 2874 chr3R 17355446 17355495 chr3R 17355574 17355623 9 128 14.0 7.0 10.5 0.8 177 chr3R 17355446 intron beat-IIa - chr3R 17355534 intron beat-IIa - chr3R 17355623 intron beat-IIa - chr3R_9_17355001 chr3R_17355001 RAL-223 2875 chr3R 17355498 17355514 chr3R 17355571 17355642 10 122 9.5 7.0 8.2 1.1 144 chr3R 17355498 intron beat-IIa - chr3R 17355570 intron beat-IIa - chr3R 17355642 intron beat-IIa - chr3R_10_17355001 chr3R_17355001 RAL-223 2876 chr3R 17358984 17359056 chr3R 17359108 17359184 26 127 8.5 7.0 7.8 3.0 200 chr3R 17358984 intron beat-IIa - chr3R 17359084 intron beat-IIa - chr3R 17359184 intron beat-IIa - chr3R_26_17355001 chr3R_17355001 RAL-223 2877 chr3R 17384365 17384389 chr3R 17384573 17384597 6 208 4.5 4.5 4.5 1.1 232 chr3R 17384365 intron,intron Brf -,lute + chr3R 17384481 intron,intron Brf -,lute + chr3R 17384597 intron,intron Brf -,lute + chr3R_6_17380001 chr3R_17380001 RAL-223 2878 chr3R 17406952 17407029 chr3R 17407104 17407181 27 152 10.0 6.5 8.2 2.9 229 chr3R 17406952 intron CG42798 + chr3R 17407066 5` UTR CG42798 + chr3R 17407181 exon CG42798 + chr3R_27_17405001 chr3R_17405001 RAL-223 2879 chr3R 17452635 17452698 chr3R 17452761 17452824 13 126 0.5 6.5 3.5 2.9 189 chr3R 17452635 intergenic not near genes chr3R 17452730 intergenic not near genes chr3R 17452824 intergenic not near genes chr3R_13_17450001 chr3R_17450001 RAL-223 2880 chr3R 17461148 17461229 chr3R 17461280 17461361 27 132 6.0 8.5 7.2 3.3 213 chr3R 17461148 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461361 intergenic not near genes chr3R_27_17460001 chr3R_17460001 RAL-223 2881 chr3R 17497917 17497940 chr3R 17498053 17498076 6 136 12.5 8.5 10.5 0.5 159 chr3R 17497917 intron Dscam3 - chr3R 17497996 intron Dscam3 - chr3R 17498076 intron Dscam3 - chr3R_6_17495001 chr3R_17495001 RAL-223 2882 chr3R 17497941 17497987 chr3R 17498077 17498123 14 136 8.5 15.0 11.8 1.1 182 chr3R 17497941 intron Dscam3 - chr3R 17498032 intron Dscam3 - chr3R 17498123 intron Dscam3 - chr3R_14_17495001 chr3R_17495001 RAL-223 2883 chr3R 17500561 17500630 chr3R 17500742 17500811 20 181 7.0 6.0 6.5 2.7 250 chr3R 17500561 intron Dscam3 - chr3R 17500686 intron Dscam3 - chr3R 17500811 intron Dscam3 - chr3R_20_17500001 chr3R_17500001 RAL-223 2884 chr3R 17509210 17509246 chr3R 17516808 17516844 412 13 7598 4.5 16.0 10.2 1.2 7634 chr3R 17509210 intergenic not near genes chr3R 17513027 intergenic not near genes chr3R 17516844 intergenic not near genes chr3R_13_17510001 chr3R_17510001 RAL-223 2885 chr3R 17521509 17521581 chr3R 17521716 17521791 8 205 4.0 7.0 5.5 1.2 282 chr3R 17521509 intergenic not near genes chr3R 17521650 intergenic not near genes chr3R 17521791 intergenic not near genes chr3R_8_17520001 chr3R_17520001 RAL-223 2886 chr3R 17522168 17522180 chr3R 17522311 17522323 7 143 24.0 0.0 12.0 0.5 155 chr3R 17522168 intergenic not near genes chr3R 17522246 intergenic not near genes chr3R 17522323 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-223 2887 chr3R 17524864 17524930 chr3R 17524987 17525060 7 128 0.5 6.5 3.5 1.6 196 chr3R 17524864 intergenic not near genes chr3R 17524962 intergenic not near genes chr3R 17525060 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-223 2888 chr3R 17562180 17562254 chr3R 17562401 17562475 24 220 10.5 6.0 8.2 2.6 295 chr3R 17562180 intron Hmx + chr3R 17562328 intron Hmx + chr3R 17562475 intron Hmx + chr3R_24_17560001 chr3R_17560001 RAL-223 2889 chr3R 17591249 17591317 chr3R 17591735 17591793 F-element 19 485 7.5 10.0 8.8 1.9 544 chr3R 17591249 intergenic not near genes chr3R 17591521 intergenic not near genes chr3R 17591793 intergenic not near genes chr3R_19_17590001 chr3R_17590001 RAL-223 2890 chr3R 17638270 17638338 chr3R 17638806 17638874 roo 23 536 9.0 8.5 8.8 2.3 604 chr3R 17638270 intron CG43175 + chr3R 17638572 intron CG43175 + chr3R 17638874 intron,intron CG43175 +,CR45222 + chr3R_23_17635001 chr3R_17635001 RAL-223 2891 chr3R 17647193 17647273 chr3R 17647340 17647420 26 147 4.0 6.0 5.0 4.3 227 chr3R 17647193 intergenic CG14322 + chr3R 17647306 intergenic CG14322 + chr3R 17647420 intergenic CG14322 + chr3R_26_17645001 chr3R_17645001 RAL-223 2892 chr3R 17657634 17657661 chr3R 17657822 17657862 INE-1 7 199 0.0 15.0 7.5 0.8 228 chr3R 17657634 intron CG14322 + chr3R 17657748 intron CG14322 + chr3R 17657862 intron CG14322 + chr3R_7_17655001 chr3R_17655001 RAL-223 2893 chr3R 17701357 17701360 chr3R 17701483 17701493 4 131 11.0 10.0 10.5 0.3 136 chr3R 17701357 intron osa - chr3R 17701425 intron osa - chr3R 17701493 intron osa - chr3R_4_17700001 chr3R_17700001 RAL-223 2894 chr3R 17701362 17701392 chr3R 17701480 17701510 16 130 8.0 9.5 8.8 1.6 148 chr3R 17701362 intron osa - chr3R 17701436 intron osa - chr3R 17701510 intron osa - chr3R_16_17700001 chr3R_17700001 RAL-223 2895 chr3R 17725022 17725083 chr3R 17725166 17725213 16 140 7.5 0.0 3.8 3.3 191 chr3R 17725022 5` UTR Atg8b - chr3R 17725118 intergenic Atg8b - chr3R 17725213 intergenic Atg8b - chr3R_16_17725001 chr3R_17725001 RAL-223 2896 chr3R 17734081 17734136 chr3R 17734220 17734275 21 137 4.5 12.5 8.5 2.2 194 chr3R 17734081 exon CG14321 + chr3R 17734178 3` UTR CG14321 + chr3R 17734275 3` UTR CG14321 + chr3R_21_17730001 chr3R_17730001 RAL-223 2897 chr3R 17734802 17734855 chr3R 17734966 17735019 14 164 2.0 0.0 1.0 7.0 217 chr3R 17734802 intergenic CG14321 + chr3R 17734910 intergenic not near genes chr3R 17735019 intergenic not near genes chr3R_14_17730001 chr3R_17730001 RAL-223 2898 chr3R 17748311 17748326 chr3R 17748514 17748529 4 201 12.0 5.0 8.5 0.4 218 chr3R 17748311 intergenic not near genes chr3R 17748420 intergenic not near genes chr3R 17748529 intergenic not near genes chr3R_4_17745001 chr3R_17745001 RAL-223 2899 chr3R 17748328 17748387 chr3R 17748512 17748589 24 196 4.0 4.5 4.2 4.6 261 chr3R 17748328 intergenic not near genes chr3R 17748458 intergenic not near genes chr3R 17748589 intergenic not near genes chr3R_24_17745001 chr3R_17745001 RAL-223 2900 chr3R 17765658 17765732 chr3R 17765791 17765865 33 130 12.0 11.5 11.8 2.6 207 chr3R 17765658 intergenic not near genes chr3R 17765762 intergenic not near genes chr3R 17765865 intergenic not near genes chr3R_33_17765001 chr3R_17765001 RAL-223 2901 chr3R 17823161 17823235 chr3R 17823296 17823370 15 135 3.0 3.5 3.2 3.6 209 chr3R 17823161 intron tinc + chr3R 17823266 intron tinc + chr3R 17823370 intron tinc + chr3R_15_17820001 chr3R_17820001 RAL-223 2902 chr3R 17845068 17845209 chr3R 17845206 17845336 5 132 0.0 0.0 0.0 5.0 268 chr3R 17845068 intron tinc + chr3R 17845202 intron tinc + chr3R 17845336 intron tinc + chr3R_5_17845001 chr3R_17845001 RAL-223 2903 chr3R 17856008 17856045 chr3R 17856158 17856196 8 151 10.5 11.0 10.8 0.7 188 chr3R 17856008 intron tinc + chr3R 17856102 intron tinc + chr3R 17856196 intron tinc + chr3R_8_17855001 chr3R_17855001 RAL-223 2904 chr3R 17898322 17898354 chr3R 17898454 17898486 18 132 8.0 19.0 13.5 1.2 164 chr3R 17898322 intron Rim - chr3R 17898404 intron Rim - chr3R 17898486 intron Rim - chr3R_18_17895001 chr3R_17895001 RAL-223 2905 chr3R 17899044 17899059 chr3R 17899172 17899187 7 128 9.0 6.5 7.8 0.8 143 chr3R 17899044 intron Rim - chr3R 17899116 intron Rim - chr3R 17899187 intron Rim - chr3R_7_17895001 chr3R_17895001 RAL-223 2906 chr3R 17913072 17913146 chr3R 17913217 17913291 22 143 0.0 8.0 4.0 4.4 219 chr3R 17913072 intron Rim - chr3R 17913182 intron Rim - chr3R 17913291 intron Rim - chr3R_22_17910001 chr3R_17910001 RAL-223 2907 chr3R 17914722 17914737 chr3R 17915246 17915261 7 524 4.0 6.0 5.0 1.2 539 chr3R 17914722 intron Rim - chr3R 17914992 5` UTR Rim - chr3R 17915261 intron Rim - chr3R_7_17910001 chr3R_17910001 RAL-223 2908 chr3R 17925811 17925851 chr3R 17927328 17927358 hobo 12 1515 14.5 9.5 12.0 0.9 1547 chr3R 17925811 intron cpo + chr3R 17926584 intron cpo + chr3R 17927358 intron cpo + chr3R_12_17925001 chr3R_17925001 RAL-223 2909 chr3R 17976472 17976531 chr3R 17976599 17976658 17 127 6.5 10.0 8.2 1.8 186 chr3R 17976472 intron cpo + chr3R 17976565 intron cpo + chr3R 17976658 intron cpo + chr3R_17_17975001 chr3R_17975001 RAL-223 2910 chr3R 18002999 18003008 chr3R 18003145 18003154 5 146 12.5 0.0 6.2 0.7 155 chr3R 18002999 intron cpo + chr3R 18003076 intron cpo + chr3R 18003154 intron cpo + chr3R_5_18000001 chr3R_18000001 RAL-223 2911 chr3R 18025293 18025324 chr3R 18025424 18025455 11 131 10.0 9.5 9.8 1.0 162 chr3R 18025293 exon CG7794 + chr3R 18025374 3` UTR CG7794 + chr3R 18025455 intergenic CG7794 + chr3R_11_18025001 chr3R_18025001 RAL-223 2912 chr3R 18025325 18025357 chr3R 18025416 18025488 9 127 4.5 8.0 6.2 1.2 163 chr3R 18025325 3` UTR CG7794 + chr3R 18025406 intergenic CG7794 + chr3R 18025488 intergenic CG7794 + chr3R_9_18025001 chr3R_18025001 RAL-223 2913 chr3R 18032734 18032806 chr3R 18040456 18040529 opus 12 7723 1.5 6.5 4.0 2.4 7795 chr3R 18032734 intergenic not near genes chr3R 18036632 intergenic not near genes chr3R 18040529 intergenic not near genes chr3R_12_18035001 chr3R_18035001 RAL-223 2914 chr3R 18061394 18061437 chr3R 18061536 18061579 14 142 8.5 0.0 4.2 2.7 185 chr3R 18061394 intergenic not near genes chr3R 18061486 intergenic not near genes chr3R 18061579 intergenic not near genes chr3R_14_18060001 chr3R_18060001 RAL-223 2915 chr3R 18061570 18061587 chr3R 18063194 18063211 F-element 6 1624 0.0 4.0 2.0 2.0 1641 chr3R 18061570 intergenic not near genes chr3R 18062390 intergenic not near genes chr3R 18063211 intergenic not near genes chr3R_6_18060001 chr3R_18060001 RAL-223 2916 chr3R 18065626 18065660 chr3R 18065787 18065821 5 161 4.5 9.0 6.8 0.6 195 chr3R 18065626 intergenic not near genes chr3R 18065724 intergenic not near genes chr3R 18065821 intergenic not near genes chr3R_5_18065001 chr3R_18065001 RAL-223 2917 chr3R 18107129 18107136 chr3R 18107262 18107269 6 133 0.0 12.0 6.0 0.9 140 chr3R 18107129 intron sr + chr3R 18107199 intron sr + chr3R 18107269 intron sr + chr3R_6_18105001 chr3R_18105001 RAL-223 2918 chr3R 18119709 18119753 chr3R 18119825 18119880 13 126 4.0 5.0 4.5 2.4 171 chr3R 18119709 intron sr + chr3R 18119794 intron sr + chr3R 18119880 intron sr + chr3R_13_18115001 chr3R_18115001 RAL-223 2919 chr3R 18122840 18122912 chr3R 18122968 18123046 14 132 4.5 0.0 2.2 4.4 206 chr3R 18122840 intron sr + chr3R 18122943 intron sr + chr3R 18123046 intron sr + chr3R_14_18120001 chr3R_18120001 RAL-223 2920 chr3R 18126165 18126228 chr3R 18126292 18126357 26 129 10.0 9.5 9.8 2.4 192 chr3R 18126165 intron sr + chr3R 18126261 intron sr + chr3R 18126357 intron sr + chr3R_26_18125001 chr3R_18125001 RAL-223 2921 chr3R 18136186 18136222 chr3R 18136350 18136386 10 164 10.5 5.0 7.8 1.1 200 chr3R 18136186 intergenic not near genes chr3R 18136286 intergenic not near genes chr3R 18136386 intergenic not near genes chr3R_10_18135001 chr3R_18135001 RAL-223 2922 chr3R 18291814 18291876 chr3R 18291947 18292009 27 133 6.5 11.5 9.0 2.7 195 chr3R 18291814 intron l(3)05822 - chr3R 18291912 intron l(3)05822 - chr3R 18292009 intron l(3)05822 - chr3R_27_18290001 chr3R_18290001 RAL-223 2923 chr3R 18302942 18302987 chr3R 18303096 18303141 14 154 7.5 0.0 3.8 2.9 199 chr3R 18302942 intergenic CG7126 -,PKD - chr3R 18303042 intergenic CG7126 -,PKD - chr3R 18303141 intergenic PKD -,CG7126 - chr3R_14_18300001 chr3R_18300001 RAL-223 2924 chr3R 18338984 18339025 chr3R 18339138 18339179 15 152 0.0 13.5 6.8 1.9 195 chr3R 18338984 intron CG15803 - chr3R 18339082 intron CG15803 - chr3R 18339179 intron CG15803 - chr3R_15_18335001 chr3R_18335001 RAL-223 2925 chr3R 18379579 18379652 chr3R 18379932 18380007 24 354 8.5 9.0 8.8 2.4 428 chr3R 18379579 intron CG7675 - chr3R 18379793 intron CG7675 - chr3R 18380007 intron CG7675 - chr3R_24_18375001 chr3R_18375001 RAL-223 2926 chr3R 18394429 18394504 chr3R 18394556 18394631 28 127 10.0 5.5 7.8 3.2 202 chr3R 18394429 intron Vha100-2 - chr3R 18394530 intron Vha100-2 - chr3R 18394631 intron Vha100-2 - chr3R_28_18390001 chr3R_18390001 RAL-223 2927 chr3R 18472233 18472299 chr3R 18472384 18472450 14 151 2.5 2.0 2.2 4.4 217 chr3R 18472233 intron fru - chr3R 18472342 intron fru - chr3R 18472450 intron fru - chr3R_14_18470001 chr3R_18470001 RAL-223 2928 chr3R 18485282 18485355 chr3R 18485431 18485505 13 150 5.5 7.5 6.5 1.7 223 chr3R 18485282 intron fru - chr3R 18485394 intron fru - chr3R 18485505 intron fru - chr3R_13_18485001 chr3R_18485001 RAL-223 2929 chr3R 18500699 18500732 chr3R 18500870 18500903 19 171 6.0 21.0 13.5 1.3 204 chr3R 18500699 intron fru - chr3R 18500801 intron fru - chr3R 18500903 intron fru - chr3R_19_18500001 chr3R_18500001 RAL-223 2930 chr3R 18505418 18505439 chr3R 18505548 18505569 10 130 8.5 0.0 4.2 1.9 151 chr3R 18505418 intron fru - chr3R 18505494 intron fru - chr3R 18505569 intron fru - chr3R_10_18505001 chr3R_18505001 RAL-223 2931 chr3R 18559387 18559397 chr3R 18559514 18559514 4 124 5.5 0.0 2.8 1.1 127 chr3R 18559387 intergenic CG7691 + chr3R 18559450 intergenic CG7691 + chr3R 18559514 intergenic CG7691 + chr3R_4_18555001 chr3R_18555001 RAL-223 2932 chr3R 18606462 18606525 chr3R 18610744 18610807 F-element 27 4281 7.0 11.0 9.0 2.7 4345 chr3R 18606462 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610807 intron,intron qin +,CG14304 - chr3R_27_18605001 chr3R_18605001 RAL-223 2933 chr3R 18618231 18618294 chr3R 18618366 18618429 15 135 4.5 7.5 6.0 2.1 198 chr3R 18618231 intron,intron qin +,CG14304 - chr3R 18618330 intron,intron qin +,CG14304 - chr3R 18618429 intron,intron qin +,CG14304 - chr3R_15_18615001 chr3R_18615001 RAL-223 2934 chr3R 18670345 18670371 chr3R 18670488 18670514 13 142 17.0 8.5 12.8 0.9 169 chr3R 18670345 intron CG7702 + chr3R 18670430 intron CG7702 + chr3R 18670514 intron CG7702 + chr3R_13_18670001 chr3R_18670001 RAL-223 2935 chr3R 18670374 18670408 chr3R 18670476 18670551 17 141 7.5 5.5 6.5 2.3 177 chr3R 18670374 intron CG7702 + chr3R 18670462 intron CG7702 + chr3R 18670551 intron CG7702 + chr3R_17_18670001 chr3R_18670001 RAL-223 2936 chr3R 18766732 18766803 chr3R 18766860 18766931 35 128 7.0 6.5 6.8 4.5 199 chr3R 18766732 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766931 intron CG7720 - chr3R_35_18765001 chr3R_18765001 RAL-223 2937 chr3R 18770242 18770322 chr3R 18770374 18770454 32 132 8.0 5.5 6.8 4.1 212 chr3R 18770242 intron CG7720 - chr3R 18770348 intron CG7720 - chr3R 18770454 intron CG7720 - chr3R_32_18770001 chr3R_18770001 RAL-223 2938 chr3R 18781643 18781714 chr3R 18781769 18781840 24 123 7.5 7.0 7.2 2.9 197 chr3R 18781643 intron CG7720 - chr3R 18781742 intron CG7720 - chr3R 18781840 intron CG7720 - chr3R_24_18780001 chr3R_18780001 RAL-223 2939 chr3R 18785824 18785900 chr3R 18785951 18786027 26 127 7.5 2.0 4.8 4.5 203 chr3R 18785824 intron CG7720 - chr3R 18785926 intron CG7720 - chr3R 18786027 intron CG7720 - chr3R_26_18785001 chr3R_18785001 RAL-223 2940 chr3R 18791469 18791511 chr3R 18791578 18791610 12 111 12.0 2.5 7.2 1.5 141 chr3R 18791469 intron CG7720 - chr3R 18791540 intron CG7720 - chr3R 18791610 intron CG7720 - chr3R_12_18790001 chr3R_18790001 RAL-223 2941 chr3R 18792768 18792830 chr3R 18792901 18792963 10 133 3.5 0.0 1.8 3.6 195 chr3R 18792768 intron CG7720 - chr3R 18792866 intron CG7720 - chr3R 18792963 intron CG7720 - chr3R_10_18790001 chr3R_18790001 RAL-223 2942 chr3R 18807286 18807311 chr3R 18807407 18807438 7 126 6.5 0.0 3.2 1.7 152 chr3R 18807286 exon CG18208 - chr3R 18807362 intron CG18208 - chr3R 18807438 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-223 2943 chr3R 18808427 18808439 chr3R 18808554 18808566 7 127 17.0 5.5 11.2 0.6 139 chr3R 18808427 intron CG18208 - chr3R 18808496 intron CG18208 - chr3R 18808566 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-223 2944 chr3R 18808441 18808504 chr3R 18808553 18808631 15 121 5.0 5.5 5.2 2.4 190 chr3R 18808441 intron CG18208 - chr3R 18808536 intron CG18208 - chr3R 18808631 intron CG18208 - chr3R_15_18805001 chr3R_18805001 RAL-223 2945 chr3R 18812031 18812067 chr3R 18812154 18812195 6 127 13.0 7.0 10.0 0.5 164 chr3R 18812031 intron CG18208 - chr3R 18812113 intron CG18208 - chr3R 18812195 intron CG18208 - chr3R_6_18810001 chr3R_18810001 RAL-223 2946 chr3R 18812070 18812100 chr3R 18812152 18812228 11 123 9.5 8.0 8.8 1.1 158 chr3R 18812070 intron CG18208 - chr3R 18812149 intron CG18208 - chr3R 18812228 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-223 2947 chr3R 18825263 18825300 chr3R 18825404 18825434 17 141 5.5 4.5 5.0 2.8 171 chr3R 18825263 intron CG18208 - chr3R 18825348 intron CG18208 - chr3R 18825434 intron CG18208 - chr3R_17_18825001 chr3R_18825001 RAL-223 2948 chr3R 18839765 18839835 chr3R 18839899 18839969 24 134 5.5 7.5 6.5 3.2 204 chr3R 18839765 intron CG18208 - chr3R 18839867 intron CG18208 - chr3R 18839969 intron CG18208 - chr3R_24_18835001 chr3R_18835001 RAL-223 2949 chr3R 18857345 18857415 chr3R 18857480 18857546 21 128 11.0 12.0 11.5 1.7 201 chr3R 18857345 intergenic not near genes chr3R 18857446 intergenic not near genes chr3R 18857546 intergenic not near genes chr3R_21_18855001 chr3R_18855001 RAL-223 2950 chr3R 18863109 18863177 chr3R 18863246 18863313 14 136 2.0 2.0 2.0 4.7 204 chr3R 18863109 intergenic not near genes chr3R 18863211 intergenic not near genes chr3R 18863313 intergenic not near genes chr3R_14_18860001 chr3R_18860001 RAL-223 2951 chr3R 18961940 18961995 chr3R 18962069 18962124 19 128 10.0 7.0 8.5 2.0 184 chr3R 18961940 intron,intron CG42613 +,CG43732 + chr3R 18962032 intron,intron CG42613 +,CG43732 + chr3R 18962124 intron,intron CG42613 +,CG43732 + chr3R_19_18960001 chr3R_18960001 RAL-223 2952 chr3R 19079537 19079569 chr3R 19079666 19079704 10 132 16.5 6.5 11.5 0.8 167 chr3R 19079537 intron cdi - chr3R 19079620 intron cdi - chr3R 19079704 intron cdi - chr3R_10_19075001 chr3R_19075001 RAL-223 2953 chr3R 19079570 19079589 chr3R 19079657 19079724 8 129 11.0 5.0 8.0 0.9 154 chr3R 19079570 intron cdi - chr3R 19079647 intron cdi - chr3R 19079724 intron cdi - chr3R_8_19075001 chr3R_19075001 RAL-223 2954 chr3R 19116884 19116888 chr3R 19117052 19117056 4 168 8.5 0.0 4.2 0.8 172 chr3R 19116884 intron CG6040 + chr3R 19116970 intron CG6040 + chr3R 19117056 intron CG6040 + chr3R_4_19115001 chr3R_19115001 RAL-223 2955 chr3R 19193002 19193003 chr3R 19197299 19197357 F-element 7 4326 0.0 7.5 3.8 1.5 4355 chr3R 19193002 intron CG31475 + chr3R 19195180 intron CG31475 + chr3R 19197357 intron CG31475 + chr3R_7_19195001 chr3R_19195001 RAL-223 2956 chr3R 19208648 19208661 chr3R 19208785 19208798 6 137 8.5 0.0 4.2 1.2 150 chr3R 19208648 intergenic not near genes chr3R 19208723 intergenic not near genes chr3R 19208798 intergenic not near genes chr3R_6_19205001 chr3R_19205001 RAL-223 2957 chr3R 19244170 19244232 chr3R 19247488 19247550 25 3321 52.5 55.5 54.0 0.5 3380 chr3R 19244170 exon unc79 - chr3R 19245860 intron unc79 - chr3R 19247550 exon CG5217 - chr3R_25_19245001 chr3R_19245001 RAL-223 2958 chr3R 19290870 19290881 chr3R 19291003 19291014 5 133 0.0 5.5 2.8 1.3 144 chr3R 19290870 intergenic not near genes chr3R 19290942 intergenic not near genes chr3R 19291014 intergenic not near genes chr3R_5_19290001 chr3R_19290001 RAL-223 2959 chr3R 19340352 19340425 chr3R 19340478 19340552 25 127 3.5 3.5 3.5 5.6 200 chr3R 19340352 intergenic not near genes chr3R 19340452 intergenic not near genes chr3R 19340552 intergenic not near genes chr3R_25_19340001 chr3R_19340001 RAL-223 2960 chr3R 19344616 19344690 chr3R 19344801 19344875 13 185 5.0 7.0 6.0 1.9 259 chr3R 19344616 intergenic not near genes chr3R 19344746 intergenic not near genes chr3R 19344875 intergenic not near genes chr3R_13_19340001 chr3R_19340001 RAL-223 2961 chr3R 19364391 19364451 chr3R 19364586 19364650 23 195 5.5 8.0 6.8 2.9 259 chr3R 19364391 intergenic not near genes chr3R 19364520 intergenic not near genes chr3R 19364650 intergenic not near genes chr3R_23_19360001 chr3R_19360001 RAL-223 2962 chr3R 19431458 19431498 chr3R 19431594 19431632 4 136 4.0 10.0 7.0 0.5 174 chr3R 19431458 intron CG31221 + chr3R 19431545 intron CG31221 + chr3R 19431632 intron CG31221 + chr3R_4_19430001 chr3R_19430001 RAL-223 2963 chr3R 4230353 4230406 chr3R 19450103 19450156 23 15219750 26.0 0.0 13.0 1.6 15219803 chr3R 4230353 intergenic CG14641 - chr3R 11840254 intron CG6959 - chr3R 19450156 intron CG31221 + chr3R_23_11840001 chr3R_11840001 RAL-223 2964 chr3R 4230408 4230424 chr3R 19450158 19450174 7 15219750 31.5 0.0 15.8 0.4 15219766 chr3R 4230408 intergenic CG14641 - chr3R 11840291 intron CG6959 - chr3R 19450174 intron CG31221 + chr3R_7_11840001 chr3R_11840001 RAL-223 2965 chr3R 19474835 19474904 chr3R 19475125 19475194 7 290 6.5 0.0 3.2 1.7 359 chr3R 19474835 intron Dys + chr3R 19475014 intron Dys + chr3R 19475194 intron Dys + chr3R_7_19475001 chr3R_19475001 RAL-223 2966 chr3R 19475578 19475641 chr3R 19475752 19475814 20 172 7.5 8.5 8.0 2.2 236 chr3R 19475578 intron Dys + chr3R 19475696 intron Dys + chr3R 19475814 intron Dys + chr3R_20_19475001 chr3R_19475001 RAL-223 2967 chr3R 19494364 19494406 chr3R 19494494 19494536 11 130 5.5 9.0 7.2 1.3 172 chr3R 19494364 intron Dys + chr3R 19494450 intron Dys + chr3R 19494536 intron Dys + chr3R_11_19490001 chr3R_19490001 RAL-223 2968 chr3R 19602723 19602782 chr3R 19602851 19602910 13 128 4.5 8.5 6.5 1.7 187 chr3R 19602723 intergenic CG7333 + chr3R 19602816 intergenic CG7333 + chr3R 19602910 intergenic CG7333 +,CG7342 + chr3R_13_19600001 chr3R_19600001 RAL-223 2969 chr3R 19738480 19738540 chr3R 19738633 19738693 31 152 10.5 9.0 9.8 2.9 213 chr3R 19738480 intron GluClalpha + chr3R 19738586 intron GluClalpha + chr3R 19738693 intron GluClalpha + chr3R_31_19735001 chr3R_19735001 RAL-223 2970 chr3R 19827481 19827551 chr3R 19827617 19827687 38 136 8.5 12.5 10.5 3.3 206 chr3R 19827481 intron bnl - chr3R 19827584 intron bnl - chr3R 19827687 exon bnl - chr3R_38_19825001 chr3R_19825001 RAL-223 2971 chr3R 20008777 20008843 chr3R 20008908 20008974 21 130 7.0 5.5 6.2 2.9 197 chr3R 20008777 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008974 5` UTR MED25 + chr3R_21_20005001 chr3R_20005001 RAL-223 2972 chr3R 20059417 20059486 chr3R 20059547 20059616 26 129 8.5 7.5 8.0 2.9 199 chr3R 20059417 intron CG4390 - chr3R 20059516 intron CG4390 - chr3R 20059616 exon CG4390 - chr3R_26_20055001 chr3R_20055001 RAL-223 2973 chr3R 20076987 20077062 chr3R 20077123 20077198 42 134 10.0 5.0 7.5 4.9 211 chr3R 20076987 intergenic not near genes chr3R 20077092 intergenic not near genes chr3R 20077198 intergenic not near genes chr3R_42_20075001 chr3R_20075001 RAL-223 2974 chr3R 20109490 20109561 chr3R 20114744 20114817 copia 21 5255 5.5 8.0 6.8 2.7 5327 chr3R 20109490 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114817 intergenic CG10887 + chr3R_21_20110001 chr3R_20110001 RAL-223 2975 chr3R 20156650 20156715 chr3R 20165870 20165935 roo 35 9219 11.0 8.5 9.8 3.2 9285 chr3R 20156650 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165935 intergenic not near genes chr3R_35_20160001 chr3R_20160001 RAL-223 2976 chr3R 20193441 20193471 chr3R 20193580 20193610 8 138 4.0 9.5 6.8 1.0 169 chr3R 20193441 intergenic not near genes chr3R 20193526 intergenic not near genes chr3R 20193610 intergenic not near genes chr3R_8_20190001 chr3R_20190001 RAL-223 2977 chr3R 20203910 20203925 chr3R 20204041 20204056 5 131 6.0 6.0 6.0 0.7 146 chr3R 20203910 intergenic not near genes chr3R 20203983 intergenic not near genes chr3R 20204056 intergenic not near genes chr3R_5_20200001 chr3R_20200001 RAL-223 2978 chr3R 20205358 20205594 chr3R 20205525 20205766 26 169 0.0 0.0 0.0 26.0 408 chr3R 20205358 intron Nlg4 + chr3R 20205562 intron Nlg4 + chr3R 20205766 intron Nlg4 + chr3R_26_20205001 chr3R_20205001 RAL-223 2979 chr3R 20238756 20238767 chr3R 20238886 20238897 5 128 13.0 10.0 11.5 0.4 141 chr3R 20238756 intron Nlg4 + chr3R 20238826 intron Nlg4 + chr3R 20238897 intron Nlg4 + chr3R_5_20235001 chr3R_20235001 RAL-223 2980 chr3R 20245231 20245292 chr3R 20248893 20248953 F-element 7 3661 7.5 0.0 3.8 1.5 3722 chr3R 20245231 3` UTR Nlg4 + chr3R 20247092 intergenic not near genes chr3R 20248953 intergenic not near genes chr3R_7_20245001 chr3R_20245001 RAL-223 2981 chr3R 20252173 20252253 chr3R 20252301 20252381 7 128 5.0 0.0 2.5 2.0 208 chr3R 20252173 intergenic not near genes chr3R 20252277 intergenic cic + chr3R 20252381 intergenic cic + chr3R_7_20250001 chr3R_20250001 RAL-223 2982 chr3R 20256793 20256859 chr3R 20256919 20256987 14 127 1.0 7.5 4.2 2.7 194 chr3R 20256793 intron cic + chr3R 20256890 intron cic + chr3R 20256987 intron cic + chr3R_14_20255001 chr3R_20255001 RAL-223 2983 chr3R 20266478 20266538 chr3R 20272999 20273059 Burdock 26 6520 12.0 9.0 10.5 2.3 6581 chr3R 20266478 intron cic + chr3R 20269768 intron cic + chr3R 20273059 intron cic + chr3R_26_20265001 chr3R_20265001 RAL-223 2984 chr3R 20282227 20282292 chr3R 20282353 20282418 28 126 1.5 6.5 4.0 5.6 191 chr3R 20282227 intron cic + chr3R 20282322 intron cic + chr3R 20282418 intron cic + chr3R_28_20280001 chr3R_20280001 RAL-223 2985 chr3R 20312808 20312878 chr3R 20312944 20313014 20 136 7.5 7.5 7.5 2.4 206 chr3R 20312808 intron CG42668 + chr3R 20312911 intron CG42668 + chr3R 20313014 intron CG42668 + chr3R_20_20310001 chr3R_20310001 RAL-223 2986 chr3R 20330962 20331025 chr3R 20331498 20331561 roo 17 536 9.0 8.0 8.5 1.8 599 chr3R 20330962 intergenic Sirt2 + chr3R 20331262 intergenic Sirt2 + chr3R 20331561 intergenic not near genes chr3R_17_20330001 chr3R_20330001 RAL-223 2987 chr3R 20350160 20350237 chr3R 20350291 20350348 24 128 5.5 3.5 4.5 4.4 188 chr3R 20350160 intergenic not near genes chr3R 20350254 intergenic not near genes chr3R 20350348 intergenic not near genes chr3R_24_20350001 chr3R_20350001 RAL-223 2988 chr3R 20434795 20434865 chr3R 20435030 20435100 22 234 4.5 3.0 3.8 4.6 305 chr3R 20434795 intron Gfrl - chr3R 20434948 intron Gfrl - chr3R 20435100 intron Gfrl - chr3R_22_20430001 chr3R_20430001 RAL-223 2989 chr3R 20450614 20450684 chr3R 20450747 20450818 10 134 4.5 0.0 2.2 3.1 204 chr3R 20450614 intron Gfrl - chr3R 20450716 intron Gfrl - chr3R 20450818 intron Gfrl - chr3R_10_20450001 chr3R_20450001 RAL-223 2990 chr3R 20483278 20483290 chr3R 20483413 20483425 5 135 5.5 5.5 5.5 0.8 147 chr3R 20483278 intron Gfrl - chr3R 20483352 intron Gfrl - chr3R 20483425 intron Gfrl - chr3R_5_20480001 chr3R_20480001 RAL-223 2991 chr3R 20487890 20487938 chr3R 20488052 20488100 24 162 14.0 9.0 11.5 1.9 210 chr3R 20487890 intergenic not near genes chr3R 20487995 intergenic not near genes chr3R 20488100 intergenic not near genes chr3R_24_20485001 chr3R_20485001 RAL-223 2992 chr3R 20512943 20512991 chr3R 20515705 20515743 opus 11 2761 8.5 0.0 4.2 2.1 2800 chr3R 20512943 intergenic CG4288 - chr3R 20514343 intergenic not near genes chr3R 20515743 intergenic not near genes chr3R_11_20510001 chr3R_20510001 RAL-223 2993 chr3R 20546267 20546337 chr3R 20546432 20546503 25 165 6.0 8.0 7.0 3.1 236 chr3R 20546267 intron Stat92E - chr3R 20546385 intron Stat92E - chr3R 20546503 intron Stat92E - chr3R_25_20545001 chr3R_20545001 RAL-223 2994 chr3R 20551108 20551182 chr3R 20551253 20551327 23 143 9.0 10.0 9.5 2.2 219 chr3R 20551108 intron Stat92E - chr3R 20551218 intron Stat92E - chr3R 20551327 intron Stat92E - chr3R_23_20550001 chr3R_20550001 RAL-223 2995 chr3R 20594438 20594513 chr3R 20594576 20594658 16 142 5.5 0.0 2.8 4.2 220 chr3R 20594438 intron bon + chr3R 20594548 intron bon + chr3R 20594658 intron bon + chr3R_16_20590001 chr3R_20590001 RAL-223 2996 chr3R 20677753 20677814 chr3R 20677900 20677961 15 147 6.0 8.0 7.0 1.9 208 chr3R 20677753 intron CR45024 + chr3R 20677857 5` UTR CR45024 + chr3R 20677961 intergenic CR45024 +,CR43452 + chr3R_15_20675001 chr3R_20675001 RAL-223 2997 chr3R 20730878 20731041 chr3R 20731028 20731178 23 145 0.0 0.0 0.0 23.0 300 chr3R 20730878 intergenic not near genes chr3R 20731028 intergenic not near genes chr3R 20731178 intergenic CG31205 + chr3R_23_20730001 chr3R_20730001 RAL-223 2998 chr3R 20787388 20787457 chr3R 20787529 20787598 25 140 11.0 6.0 8.5 2.6 210 chr3R 20787388 intron Syp + chr3R 20787493 intron Syp + chr3R 20787598 intron Syp + chr3R_25_20785001 chr3R_20785001 RAL-223 2999 chr3R 20804878 20804962 chr3R 20805030 20805109 39 147 7.0 7.0 7.0 4.9 231 chr3R 20804878 intron Syp + chr3R 20804994 intron Syp + chr3R 20805109 intron Syp + chr3R_39_20800001 chr3R_20800001 RAL-223 3000 chr3R 20848307 20848352 chr3R 20848447 20848492 10 140 0.0 9.0 4.5 1.8 185 chr3R 20848307 intergenic not near genes chr3R 20848400 intergenic not near genes chr3R 20848492 intergenic not near genes chr3R_10_20845001 chr3R_20845001 RAL-223 3001 chr3R 20850046 20850112 chr3R 20850181 20850247 21 135 0.0 5.5 2.8 5.5 201 chr3R 20850046 intergenic RpS30 + chr3R 20850146 intergenic RpS30 + chr3R 20850247 intergenic RpS30 + chr3R_21_20850001 chr3R_20850001 RAL-223 3002 chr3R 20854426 20854509 chr3R 20859271 20859348 Doc 23 4843 5.5 7.0 6.2 3.2 4922 chr3R 20854426 intron Ir93a - chr3R 20856887 intron Ir93a - chr3R 20859348 exon Ir93a - chr3R_23_20855001 chr3R_20855001 RAL-223 3003 chr3R 20995741 20995772 chr3R 20995903 20995934 13 162 0.0 0.0 0.0 13.0 193 chr3R 20995741 intron Calx + chr3R 20995838 intron Calx + chr3R 20995934 intron Calx + chr3R_13_20995001 chr3R_20995001 RAL-223 3004 chr3R 21074807 21074822 chr3R 21075078 21075093 9 271 5.0 12.0 8.5 0.9 286 chr3R 21074807 intron dmrt93B + chr3R 21074950 intron dmrt93B + chr3R 21075093 intron dmrt93B + chr3R_9_21070001 chr3R_21070001 RAL-223 3005 chr3R 21108016 21108067 chr3R 21108327 21108378 16 311 4.0 13.5 8.8 1.6 362 chr3R 21108016 intergenic Sec15 -,rtet + chr3R 21108197 intergenic Sec15 -,rtet + chr3R 21108378 intergenic rtet +,Sec15 - chr3R_16_21105001 chr3R_21105001 RAL-223 3006 chr3R 21141632 21141705 chr3R 21150163 21150229 Tirant 15 8528 6.0 6.5 6.2 2.1 8597 chr3R 21141632 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150229 intron SNF4Agamma + chr3R_15_21145001 chr3R_21145001 RAL-223 3007 chr3R 21154520 21154577 chr3R 21154785 21154842 26 265 7.5 5.0 6.2 3.6 322 chr3R 21154520 intron SNF4Agamma + chr3R 21154681 intron SNF4Agamma + chr3R 21154842 intron SNF4Agamma + chr3R_26_21150001 chr3R_21150001 RAL-223 3008 chr3R 21159061 21159119 chr3R 21159212 21159272 17 153 12.5 0.0 6.2 2.4 211 chr3R 21159061 intron SNF4Agamma + chr3R 21159166 intron SNF4Agamma + chr3R 21159272 intron,3` UTR SNF4Agamma +,CG10824 - chr3R_17_21155001 chr3R_21155001 RAL-223 3009 chr3R 21188011 21188086 chr3R 21188171 21188245 15 158 5.5 0.0 2.8 3.9 234 chr3R 21188011 intron SNF4Agamma + chr3R 21188128 intron SNF4Agamma + chr3R 21188245 intron SNF4Agamma + chr3R_15_21185001 chr3R_21185001 RAL-223 3010 chr3R 21214661 21214684 chr3R 21214792 21214809 11 130 9.5 0.0 4.8 1.9 148 chr3R 21214661 intergenic CG5862 + chr3R 21214735 intergenic CG5862 + chr3R 21214809 intergenic CG5862 + chr3R_11_21210001 chr3R_21210001 RAL-223 3011 chr3R 21239756 21239958 chr3R 21239900 21240084 20 132 0.0 0.0 0.0 20.0 328 chr3R 21239756 intergenic not near genes chr3R 21239920 intergenic not near genes chr3R 21240084 intergenic not near genes chr3R_20_21235001 chr3R_21235001 RAL-223 3012 chr3R 21240190 21240263 chr3R 21240330 21240403 32 139 7.0 6.0 6.5 4.3 213 chr3R 21240190 intergenic not near genes chr3R 21240296 intergenic not near genes chr3R 21240403 intergenic not near genes chr3R_32_21240001 chr3R_21240001 RAL-223 3013 chr3R 21255424 21255493 chr3R 21255564 21255633 21 133 7.5 12.0 9.8 1.9 209 chr3R 21255424 intron ETHR + chr3R 21255528 intron ETHR + chr3R 21255633 intron ETHR + chr3R_21_21255001 chr3R_21255001 RAL-223 3014 chr3R 21385880 21385957 chr3R 21386007 21386084 15 126 6.0 8.5 7.2 1.8 204 chr3R 21385880 intergenic not near genes chr3R 21385982 intergenic not near genes chr3R 21386084 intergenic not near genes chr3R_15_21385001 chr3R_21385001 RAL-223 3015 chr3R 21471971 21472028 chr3R 21472102 21472159 27 131 10.5 8.5 9.5 2.6 188 chr3R 21471971 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472159 intergenic not near genes chr3R_27_21470001 chr3R_21470001 RAL-223 3016 chr3R 21472282 21472320 chr3R 21472723 21472723 9 436 13.5 5.5 9.5 0.9 441 chr3R 21472282 intergenic not near genes chr3R 21472502 intergenic not near genes chr3R 21472723 intergenic not near genes chr3R_9_21470001 chr3R_21470001 RAL-223 3017 chr3R 21505059 21505079 chr3R 21505219 21505239 12 159 15.0 5.0 10.0 1.1 180 chr3R 21505059 intron C15 + chr3R 21505149 intron C15 + chr3R 21505239 intron C15 + chr3R_12_21505001 chr3R_21505001 RAL-223 3018 chr3R 21505081 21505130 chr3R 21505215 21505280 18 149 5.5 5.0 5.2 2.9 199 chr3R 21505081 intron C15 + chr3R 21505180 intron C15 + chr3R 21505280 intron C15 + chr3R_18_21505001 chr3R_21505001 RAL-223 3019 chr3R 21506826 21506910 chr3R 21506962 21507040 21 134 3.5 4.0 3.8 4.4 214 chr3R 21506826 intron C15 + chr3R 21506933 intron C15 + chr3R 21507040 intron C15 + chr3R_21_21505001 chr3R_21505001 RAL-223 3020 chr3R 21517982 21518272 chr3R 21518161 21518405 24 146 0.0 0.0 0.0 24.0 423 chr3R 21517982 intergenic not near genes chr3R 21518194 intergenic not near genes chr3R 21518405 intergenic not near genes chr3R_24_21515001 chr3R_21515001 RAL-223 3021 chr3R 21519938 21520116 chr3R 21520089 21520260 34 152 0.0 0.0 0.0 34.0 322 chr3R 21519938 intergenic not near genes chr3R 21520099 intergenic not near genes chr3R 21520260 intergenic not near genes chr3R_34_21520001 chr3R_21520001 RAL-223 3022 chr3R 21587247 21587313 chr3R 21587869 21587935 27 621 6.0 8.0 7.0 3.4 688 chr3R 21587247 intron InR - chr3R 21587591 intron InR - chr3R 21587935 intron InR - chr3R_27_21585001 chr3R_21585001 RAL-223 3023 chr3R 21594590 21594657 chr3R 21597308 21597375 21 2714 8.5 8.5 8.5 2.2 2785 chr3R 21594590 intron,5` UTR InR -,CR43653 + chr3R 21595982 intron InR - chr3R 21597375 intron InR - chr3R_21_21595001 chr3R_21595001 RAL-223 3024 chr3R 21725643 21725681 chr3R 21725829 21725867 5 186 0.0 13.5 6.8 0.6 224 chr3R 21725643 intergenic not near genes chr3R 21725755 intergenic not near genes chr3R 21725867 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-223 3025 chr3R 21731752 21731796 chr3R 21731910 21731954 6 158 13.5 2.0 7.8 0.7 202 chr3R 21731752 intergenic not near genes chr3R 21731853 intergenic not near genes chr3R 21731954 intergenic not near genes chr3R_6_21730001 chr3R_21730001 RAL-223 3026 chr3R 21733929 21733954 chr3R 21734082 21734107 4 153 2.0 4.5 3.2 1.0 178 chr3R 21733929 intergenic not near genes chr3R 21734018 intergenic not near genes chr3R 21734107 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-223 3027 chr3R 21754353 21754424 chr3R 21754533 21754571 36 175 5.0 7.5 6.2 5.0 218 chr3R 21754353 5` UTR CG31198 + chr3R 21754462 intron CG31198 + chr3R 21754571 exon CG31198 + chr3R_36_21750001 chr3R_21750001 RAL-223 3028 chr3R 21761078 21761155 chr3R 21768520 21768603 mdg1 27 7440 5.5 5.5 5.5 4.2 7525 chr3R 21761078 exon CG42335 + chr3R 21764840 intron CG42335 + chr3R 21768603 exon CG42335 + chr3R_27_21760001 chr3R_21760001 RAL-223 3029 chr3R 21824912 21824980 chr3R 21825052 21825094 24 135 7.5 5.0 6.2 3.3 182 chr3R 21824912 intergenic not near genes chr3R 21825003 intergenic not near genes chr3R 21825094 intergenic not near genes chr3R_24_21825001 chr3R_21825001 RAL-223 3030 chr3R 21883920 21883989 chr3R 21884048 21884117 18 128 0.0 5.5 2.8 4.7 197 chr3R 21883920 intron,3` UTR CR45046 -,CG31465 + chr3R 21884018 intron,3` UTR CR45046 -,fit - chr3R 21884117 exon fit - chr3R_18_21880001 chr3R_21880001 RAL-223 3031 chr3R 21903496 21903632 chr3R 21903626 21903779 6 144 0.0 0.0 0.0 6.0 283 chr3R 21903496 intron CG6678 + chr3R 21903638 intron CG6678 + chr3R 21903779 intron CG6678 + chr3R_6_21900001 chr3R_21900001 RAL-223 3032 chr3R 21907534 21907534 chr3R 28831801 28831802 10 6924268 28.5 35.0 31.8 0.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-223 3033 chr3R 21907535 21907535 chr3R 28831801 28831802 27 6924266 28.5 35.0 31.8 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-223 3034 chr3R 21907536 21907536 chr3R 28831801 28831802 20 6924266 28.5 35.0 31.8 0.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-223 3035 chr3R 21932869 21932946 chr3R 21933011 21933088 30 138 4.0 7.5 5.8 4.4 219 chr3R 21932869 intergenic not near genes chr3R 21932978 intergenic not near genes chr3R 21933088 intergenic not near genes chr3R_30_21930001 chr3R_21930001 RAL-223 3036 chr3R 21937180 21937232 chr3R 21937307 21937359 20 127 11.5 13.0 12.2 1.5 179 chr3R 21937180 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937359 intergenic not near genes chr3R_20_21935001 chr3R_21935001 RAL-223 3037 chr3R 21985181 21985262 chr3R 21985336 21985414 24 153 5.0 6.5 5.8 3.5 233 chr3R 21985181 intron Eip93F + chr3R 21985298 intron Eip93F + chr3R 21985414 intron Eip93F + chr3R_24_21985001 chr3R_21985001 RAL-223 3038 chr3R 22002493 22002573 chr3R 22002642 22002722 14 145 4.0 0.0 2.0 4.7 229 chr3R 22002493 intron Eip93F + chr3R 22002608 intron Eip93F + chr3R 22002722 intron Eip93F + chr3R_14_22000001 chr3R_22000001 RAL-223 3039 chr3R 22117373 22117444 chr3R 22117499 22117570 26 126 10.0 8.0 9.0 2.6 197 chr3R 22117373 intergenic Ir94b -,Ir94c - chr3R 22117472 intergenic Ir94c -,Ir94b - chr3R 22117570 intergenic Ir94c -,Ir94b - chr3R_26_22115001 chr3R_22115001 RAL-223 3040 chr3R 22239453 22239525 chr3R 22248563 22248623 roo 18 9097 5.0 2.5 3.8 3.8 9170 chr3R 22239453 intron SKIP + chr3R 22244038 intron SKIP + chr3R 22248623 intron SKIP + chr3R_18_22240001 chr3R_22240001 RAL-223 3041 chr3R 22280894 22280968 chr3R 22281026 22281100 29 132 12.5 10.5 11.5 2.3 206 chr3R 22280894 intron SKIP + chr3R 22280997 intron SKIP + chr3R 22281100 intron SKIP + chr3R_29_22280001 chr3R_22280001 RAL-223 3042 chr3R 22348497 22348519 chr3R 22349291 22349313 5 794 12.0 12.5 12.2 0.4 816 chr3R 22348497 intergenic not near genes chr3R 22348905 intergenic not near genes chr3R 22349313 intergenic not near genes chr3R_5_22345001 chr3R_22345001 RAL-223 3043 chr3R 22433047 22433059 chr3R 22433197 22433209 6 150 24.0 11.5 17.8 0.3 162 chr3R 22433047 intron CG13847 - chr3R 22433128 intron CG13847 - chr3R 22433209 intron CG13847 - chr3R_6_22430001 chr3R_22430001 RAL-223 3044 chr3R 22433061 22433109 chr3R 22433192 22433258 11 148 11.0 11.0 11.0 0.9 197 chr3R 22433061 intron CG13847 - chr3R 22433160 intron CG13847 - chr3R 22433258 intron CG13847 - chr3R_11_22430001 chr3R_22430001 RAL-223 3045 chr3R 22437755 22437822 chr3R 22437895 22437962 29 140 1.5 8.5 5.0 4.8 207 chr3R 22437755 intergenic not near genes chr3R 22437858 intergenic not near genes chr3R 22437962 intergenic not near genes chr3R_29_22435001 chr3R_22435001 RAL-223 3046 chr3R 22450501 22450569 chr3R 22453191 22453259 NOF 28 2690 6.5 15.0 10.8 2.4 2758 chr3R 22450501 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453259 intron CG34376 + chr3R_28_22450001 chr3R_22450001 RAL-223 3047 chr3R 22520723 22520791 chr3R 22520860 22520928 24 137 8.5 6.5 7.5 2.8 205 chr3R 22520723 intron CG5346 - chr3R 22520826 intron CG5346 - chr3R 22520928 intron CG5346 - chr3R_24_22520001 chr3R_22520001 RAL-223 3048 chr3R 22526265 22526323 chr3R 22526396 22526454 14 131 7.5 8.5 8.0 1.6 189 chr3R 22526265 intron CG5346 - chr3R 22526360 intron CG5346 - chr3R 22526454 intron CG5346 - chr3R_14_22525001 chr3R_22525001 RAL-223 3049 chr3R 22538397 22538473 chr3R 22538532 22538608 31 133 8.0 8.5 8.2 3.4 211 chr3R 22538397 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538608 intron CG5326 - chr3R_31_22535001 chr3R_22535001 RAL-223 3050 chr3R 22797711 22797932 chr3R 22797847 22798078 35 141 0.5 0.5 0.5 23.3 367 chr3R 22797711 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798078 intergenic not near genes chr3R_35_22795001 chr3R_22795001 RAL-223 3051 chr3R 22871390 22871441 chr3R 22871573 22871624 22 183 13.0 9.0 11.0 1.8 234 chr3R 22871390 intergenic not near genes chr3R 22871507 intergenic not near genes chr3R 22871624 intergenic not near genes chr3R_22_22870001 chr3R_22870001 RAL-223 3052 chr3R 22880554 22880610 chr3R 22880681 22880737 20 127 12.5 9.5 11.0 1.7 183 chr3R 22880554 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880737 intergenic not near genes chr3R_20_22880001 chr3R_22880001 RAL-223 3053 chr3R 22880897 22880907 chr3R 22881085 22881095 4 188 15.0 6.5 10.8 0.3 198 chr3R 22880897 intergenic not near genes chr3R 22880996 intergenic not near genes chr3R 22881095 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-223 3054 chr3R 22880910 22880947 chr3R 22881074 22881134 13 186 9.0 5.0 7.0 1.6 224 chr3R 22880910 intergenic not near genes chr3R 22881022 intergenic not near genes chr3R 22881134 intergenic not near genes chr3R_13_22880001 chr3R_22880001 RAL-223 3055 chr3R 22881190 22881230 chr3R 22884945 22884985 Doc 11 3755 5.5 12.0 8.8 1.1 3795 chr3R 22881190 intergenic not near genes chr3R 22883088 intergenic not near genes chr3R 22884985 intergenic not near genes chr3R_11_22880001 chr3R_22880001 RAL-223 3056 chr3R 22918567 22918640 chr3R 22918809 22918882 32 241 3.0 8.5 5.8 4.7 315 chr3R 22918567 intron klg + chr3R 22918724 intron klg + chr3R 22918882 intron klg + chr3R_32_22915001 chr3R_22915001 RAL-223 3057 chr3R 22945916 22945955 chr3R 22946046 22946085 12 130 5.0 11.0 8.0 1.3 169 chr3R 22945916 intron klg + chr3R 22946000 intron klg + chr3R 22946085 intron klg + chr3R_12_22945001 chr3R_22945001 RAL-223 3058 chr3R 22974259 22974307 chr3R 22974393 22974441 18 134 0.0 11.5 5.8 2.6 182 chr3R 22974259 intergenic not near genes chr3R 22974350 intergenic not near genes chr3R 22974441 intergenic not near genes chr3R_18_22970001 chr3R_22970001 RAL-223 3059 chr3R 22979711 22979762 chr3R 22979842 22979893 25 129 12.5 10.0 11.2 2.0 182 chr3R 22979711 intergenic not near genes chr3R 22979802 intergenic not near genes chr3R 22979893 intergenic not near genes chr3R_25_22975001 chr3R_22975001 RAL-223 3060 chr3R 22979769 22979779 chr3R 22979839 22979910 4 114 8.0 9.0 8.5 0.4 141 chr3R 22979769 intergenic not near genes chr3R 22979840 intergenic not near genes chr3R 22979910 intergenic not near genes chr3R_4_22975001 chr3R_22975001 RAL-223 3061 chr3R 23008389 23008428 chr3R 23008524 23008561 12 131 5.0 8.0 6.5 1.6 172 chr3R 23008389 intron CG34375 - chr3R 23008475 intron CG34375 - chr3R 23008561 intron CG34375 - chr3R_12_23005001 chr3R_23005001 RAL-223 3062 chr3R 23073622 23073623 chr3R 23073761 23073762 4 139 9.0 7.5 8.2 0.4 140 chr3R 23073622 intron CG13830 - chr3R 23073692 intron CG13830 - chr3R 23073762 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-223 3063 chr3R 23073628 23073688 chr3R 23073756 23073801 17 137 4.5 6.5 5.5 2.6 173 chr3R 23073628 intron CG13830 - chr3R 23073714 intron CG13830 - chr3R 23073801 intron CG13830 - chr3R_17_23070001 chr3R_23070001 RAL-223 3064 chr3R 23090357 23090431 chr3R 23090490 23090561 34 132 6.5 10.0 8.2 3.7 204 chr3R 23090357 intron CG13830 - chr3R 23090459 intron CG13830 - chr3R 23090561 intron CG13830 - chr3R_34_23090001 chr3R_23090001 RAL-223 3065 chr3R 23113411 23113461 chr3R 23113734 23113741 9 302 8.5 5.0 6.8 1.2 330 chr3R 23113411 intergenic not near genes chr3R 23113576 intergenic Rassf - chr3R 23113741 intergenic Rassf - chr3R_9_23110001 chr3R_23110001 RAL-223 3066 chr3R 23182636 23182680 chr3R 23182769 23182813 13 133 9.5 7.5 8.5 1.4 177 chr3R 23182636 intron Irk1 + chr3R 23182724 intron Irk1 + chr3R 23182813 intron Irk1 + chr3R_13_23180001 chr3R_23180001 RAL-223 3067 chr3R 23211940 23211988 chr3R 23212067 23212115 18 127 0.0 6.0 3.0 4.5 175 chr3R 23211940 intron cnc - chr3R 23212028 intron cnc - chr3R 23212115 intron cnc - chr3R_18_23210001 chr3R_23210001 RAL-223 3068 chr3R 23309924 23309933 chr3R 23310054 23310062 4 130 10.5 9.5 10.0 0.4 138 chr3R 23309924 intron pnt - chr3R 23309993 intron pnt - chr3R 23310062 intron pnt - chr3R_4_23305001 chr3R_23305001 RAL-223 3069 chr3R 23318352 23318397 chr3R 23318497 23318563 6 159 0.0 4.5 2.2 1.9 211 chr3R 23318352 intron pnt - chr3R 23318458 intron pnt - chr3R 23318563 intron pnt - chr3R_6_23315001 chr3R_23315001 RAL-223 3070 chr3R 23319656 23319676 chr3R 23319784 23319804 10 128 0.0 11.5 5.8 1.5 148 chr3R 23319656 intron pnt - chr3R 23319730 intron pnt - chr3R 23319804 intron pnt - chr3R_10_23315001 chr3R_23315001 RAL-223 3071 chr3R 23356956 23356991 chr3R 23357092 23357127 18 136 13.0 13.0 13.0 1.3 171 chr3R 23356956 intron Sec13 + chr3R 23357042 intron Sec13 + chr3R 23357127 intron Sec13 + chr3R_18_23355001 chr3R_23355001 RAL-223 3072 chr3R 23360174 23360185 chr3R 23360300 23360311 4 126 0.0 9.0 4.5 0.7 137 chr3R 23360174 3` UTR RpS3 + chr3R 23360242 intergenic RpS3 + chr3R 23360311 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-223 3073 chr3R 23385542 23385614 chr3R 23385714 23385787 13 172 5.0 5.0 5.0 2.2 245 chr3R 23385542 intergenic not near genes chr3R 23385664 intergenic not near genes chr3R 23385787 intergenic not near genes chr3R_13_23385001 chr3R_23385001 RAL-223 3074 chr3R 23390915 23390955 chr3R 23391047 23391084 4 130 3.5 6.5 5.0 0.7 169 chr3R 23390915 intergenic CR43387 + chr3R 23391000 intergenic CR43387 + chr3R 23391084 intergenic not near genes chr3R_4_23390001 chr3R_23390001 RAL-223 3075 chr3R 23497900 23497969 chr3R 23498031 23498103 20 131 6.5 6.5 6.5 2.7 203 chr3R 23497900 intergenic not near genes chr3R 23498002 intergenic not near genes chr3R 23498103 intergenic not near genes chr3R_20_23495001 chr3R_23495001 RAL-223 3076 chr3R 23515525 23515531 chr3R 23516735 23516742 1360 5 1211 9.5 0.5 5.0 0.8 1217 chr3R 23515525 intron Irk2 - chr3R 23516134 intron Irk2 - chr3R 23516742 intron Irk2 - chr3R_5_23515001 chr3R_23515001 RAL-223 3077 chr3R 23527220 23527289 chr3R 23527349 23527418 33 126 11.0 10.5 10.8 2.8 198 chr3R 23527220 intron CG10175 - chr3R 23527319 intron CG10175 - chr3R 23527418 intron CG10175 - chr3R_33_23525001 chr3R_23525001 RAL-223 3078 chr3R 23558353 23558429 chr3R 23560184 23560260 Bari1 29 1831 5.5 7.0 6.2 4.0 1907 chr3R 23558353 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560260 intron beat-IV + chr3R_29_23555001 chr3R_23555001 RAL-223 3079 chr3R 23593788 23593862 chr3R 23593927 23594001 37 138 10.5 6.5 8.5 3.9 213 chr3R 23593788 exon CG16723 - chr3R 23593894 intron CG16723 - chr3R 23594001 exon CG16723 - chr3R_37_23590001 chr3R_23590001 RAL-223 3080 chr3R 23627509 23627639 chr3R 23627636 23627768 26 141 0.0 0.0 0.0 26.0 259 chr3R 23627509 intron CG31145 - chr3R 23627638 intron CG31145 - chr3R 23627768 intron CG31145 - chr3R_26_23625001 chr3R_23625001 RAL-223 3081 chr3R 23640803 23640871 chr3R 23641262 23641330 25 458 7.0 8.0 7.5 2.9 527 chr3R 23640803 intron CG31145 - chr3R 23641066 intron CG31145 - chr3R 23641330 intron CG31145 - chr3R_25_23640001 chr3R_23640001 RAL-223 3082 chr3R 23663810 23663881 chr3R 23664025 23664096 25 214 8.0 4.0 6.0 3.6 286 chr3R 23663810 intron CG31145 - chr3R 23663953 intron CG31145 - chr3R 23664096 intron CG31145 - chr3R_25_23660001 chr3R_23660001 RAL-223 3083 chr3R 23677139 23677195 chr3R 23677272 23677313 29 131 12.5 13.0 12.8 2.1 174 chr3R 23677139 intergenic CG13822 + chr3R 23677226 intergenic CG13822 + chr3R 23677313 intergenic CG13822 + chr3R_29_23675001 chr3R_23675001 RAL-223 3084 chr3R 23684653 23684719 chr3R 23685189 23685255 roo 18 532 5.5 11.5 8.5 1.9 602 chr3R 23684653 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685255 exon CG18754 + chr3R_18_23680001 chr3R_23680001 RAL-223 3085 chr3R 23733084 23733157 chr3R 23733249 23733322 24 164 4.0 10.0 7.0 3.0 238 chr3R 23733084 intron Rpn9 - chr3R 23733203 intron Rpn9 - chr3R 23733322 5` UTR Rpn9 - chr3R_24_23730001 chr3R_23730001 RAL-223 3086 chr3R 23835362 23835428 chr3R 23844562 23844628 roo 30 9200 10.0 1.0 5.5 4.6 9266 chr3R 23835362 intron CG34355 + chr3R 23839995 intron CG34355 + chr3R 23844628 intron CG34355 + chr3R_30_23835001 chr3R_23835001 RAL-223 3087 chr3R 23851042 23851080 chr3R 23858759 23858797 opus 8 7717 8.5 12.5 10.5 0.7 7755 chr3R 23851042 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858797 intergenic not near genes chr3R_8_23850001 chr3R_23850001 RAL-223 3088 chr3R 23864987 23865058 chr3R 23865126 23865197 21 139 7.0 5.0 6.0 3.0 210 chr3R 23864987 intron Pli - chr3R 23865092 intron Pli - chr3R 23865197 intron Pli - chr3R_21_23865001 chr3R_23865001 RAL-223 3089 chr3R 23883056 23883125 chr3R 23883468 23883522 18 407 7.5 7.0 7.2 2.2 466 chr3R 23883056 intron Pli - chr3R 23883289 intron Pli - chr3R 23883522 intron Pli - chr3R_18_23880001 chr3R_23880001 RAL-223 3090 chr3R 23944861 23944929 chr3R 23944996 23945064 29 134 5.0 7.0 6.0 4.1 203 chr3R 23944861 intron CG12268 - chr3R 23944962 intron CG12268 - chr3R 23945064 exon CG12268 - chr3R_29_23940001 chr3R_23940001 RAL-223 3091 chr3R 23948994 23949075 chr3R 23949121 23949202 52 126 11.0 10.0 10.5 4.5 208 chr3R 23948994 intergenic not near genes chr3R 23949098 intergenic not near genes chr3R 23949202 intergenic not near genes chr3R_52_23945001 chr3R_23945001 RAL-223 3092 chr3R 24002091 24002163 chr3R 24002221 24002293 28 130 7.5 11.5 9.5 2.7 202 chr3R 24002091 intron KrT95D - chr3R 24002192 intron KrT95D - chr3R 24002293 intron KrT95D - chr3R_28_24000001 chr3R_24000001 RAL-223 3093 chr3R 24011619 24011673 chr3R 24011752 24011806 20 132 6.0 15.0 10.5 1.7 187 chr3R 24011619 intron KrT95D - chr3R 24011712 intron KrT95D - chr3R 24011806 intron KrT95D - chr3R_20_24010001 chr3R_24010001 RAL-223 3094 chr3R 24021577 24021655 chr3R 24021717 24021795 33 139 7.0 6.0 6.5 4.4 218 chr3R 24021577 intron KrT95D - chr3R 24021686 intron KrT95D - chr3R 24021795 intron KrT95D - chr3R_33_24020001 chr3R_24020001 RAL-223 3095 chr3R 24072057 24072095 chr3R 24072545 24072583 jockey 21 486 13.0 13.0 13.0 1.5 526 chr3R 24072057 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072583 intron 4EHP - chr3R_21_24070001 chr3R_24070001 RAL-223 3096 chr3R 24076881 24076942 chr3R 24078398 24078424 hobo 28 1514 6.5 11.5 9.0 2.8 1543 chr3R 24076881 intron 4EHP - chr3R 24077652 intron 4EHP - chr3R 24078424 intron 4EHP - chr3R_28_24075001 chr3R_24075001 RAL-223 3097 chr3R 24199692 24199771 chr3R 24199822 24199901 35 129 8.0 7.0 7.5 4.1 209 chr3R 24199692 intron twin - chr3R 24199796 intron twin - chr3R 24199901 exon twin - chr3R_35_24195001 chr3R_24195001 RAL-223 3098 chr3R 24207193 24207208 chr3R 24212312 24212334 flea 12 5124 14.5 14.5 14.5 0.8 5141 chr3R 24207193 intron twin - chr3R 24209764 intron twin - chr3R 24212334 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-223 3099 chr3R 24207209 24207241 chr3R 24212310 24212367 flea 10 5122 10.0 14.0 12.0 0.8 5158 chr3R 24207209 intron twin - chr3R 24209788 intron twin - chr3R 24212367 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-223 3100 chr3R 24236430 24236492 chr3R 24236557 24236619 31 127 12.5 15.0 13.8 2.1 189 chr3R 24236430 exon mask + chr3R 24236524 intron mask + chr3R 24236619 intron mask + chr3R_31_24235001 chr3R_24235001 RAL-223 3101 chr3R 24327559 24327609 chr3R 24328966 24329026 24 1406 47.5 57.5 52.5 0.4 1467 chr3R 24327559 exon BRWD3 + chr3R 24328292 3` UTR BRWD3 + chr3R 24329026 exon CG5728 - chr3R_24_24325001 chr3R_24325001 RAL-223 3102 chr3R 24327557 24327600 chr3R 24329029 24329038 6 1425 44.5 45.5 45.0 0.1 1481 chr3R 24327557 exon BRWD3 + chr3R 24328298 3` UTR BRWD3 + chr3R 24329038 exon CG5728 - chr3R_6_24325001 chr3R_24325001 RAL-223 3103 chr3R 24398487 24398551 chr3R 24398614 24398678 18 127 7.0 8.5 7.8 2.0 191 chr3R 24398487 3` UTR nAChRalpha1 - chr3R 24398582 3` UTR nAChRalpha1 - chr3R 24398678 3` UTR nAChRalpha1 - chr3R_18_24395001 chr3R_24395001 RAL-223 3104 chr3R 24423985 24424060 chr3R 24424261 24424337 19 276 6.5 7.5 7.0 2.4 352 chr3R 24423985 intron nAChRalpha1 - chr3R 24424161 intron nAChRalpha1 - chr3R 24424337 intron nAChRalpha1 - chr3R_19_24420001 chr3R_24420001 RAL-223 3105 chr3R 24426237 24426313 chr3R 24426544 24426620 25 304 8.0 6.5 7.2 3.0 383 chr3R 24426237 intron nAChRalpha1 - chr3R 24426428 intron nAChRalpha1 - chr3R 24426620 intron nAChRalpha1 - chr3R_25_24425001 chr3R_24425001 RAL-223 3106 chr3R 24433301 24433350 chr3R 24433496 24433545 16 195 13.0 10.0 11.5 1.3 244 chr3R 24433301 intron nAChRalpha1 - chr3R 24433423 intron nAChRalpha1 - chr3R 24433545 intron nAChRalpha1 - chr3R_16_24430001 chr3R_24430001 RAL-223 3107 chr3R 24433356 24433371 chr3R 24433494 24433566 10 188 7.0 8.5 7.8 1.1 210 chr3R 24433356 intron nAChRalpha1 - chr3R 24433461 intron nAChRalpha1 - chr3R 24433566 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-223 3108 chr3R 24434194 24434267 chr3R 24434321 24434395 24 127 8.0 9.5 8.8 2.4 201 chr3R 24434194 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434395 intron nAChRalpha1 - chr3R_24_24430001 chr3R_24430001 RAL-223 3109 chr3R 24482881 24482923 chr3R 24483012 24483061 13 135 14.0 9.0 11.5 1.0 180 chr3R 24482881 intergenic not near genes chr3R 24482971 intergenic not near genes chr3R 24483061 intergenic not near genes chr3R_13_24480001 chr3R_24480001 RAL-223 3110 chr3R 24493020 24493088 chr3R 24493156 24493224 24 136 9.0 9.0 9.0 2.4 204 chr3R 24493020 intergenic not near genes chr3R 24493122 intergenic not near genes chr3R 24493224 intergenic not near genes chr3R_24_24490001 chr3R_24490001 RAL-223 3111 chr3R 24493250 24493304 chr3R 24493528 24493582 BS 22 278 8.0 14.5 11.2 1.8 332 chr3R 24493250 intergenic not near genes chr3R 24493416 intergenic not near genes chr3R 24493582 intergenic not near genes chr3R_22_24490001 chr3R_24490001 RAL-223 3112 chr3R 24523850 24523925 chr3R 24523986 24524061 19 135 4.0 6.5 5.2 3.1 211 chr3R 24523850 intergenic CG13622 - chr3R 24523956 intergenic CG13622 - chr3R 24524061 intergenic CG13622 - chr3R_19_24520001 chr3R_24520001 RAL-223 3113 chr3R 24527761 24527829 chr3R 24527902 24527970 23 141 9.5 9.0 9.2 2.3 209 chr3R 24527761 intergenic CG13618 +,CG6607 + chr3R 24527866 intergenic CG6607 +,CG13618 + chr3R 24527970 intergenic CG6607 +,CG13618 + chr3R_23_24525001 chr3R_24525001 RAL-223 3114 chr3R 24594632 24594665 chr3R 24594922 24594955 pogo 15 290 6.5 16.0 11.2 1.2 323 chr3R 24594632 intron mld + chr3R 24594794 intron mld + chr3R 24594955 intron mld + chr3R_15_24590001 chr3R_24590001 RAL-223 3115 chr3R 24605503 24605556 chr3R 24605653 24605698 26 147 13.5 13.5 13.5 1.8 195 chr3R 24605503 intron mld + chr3R 24605600 intron mld + chr3R 24605698 intron mld + chr3R_26_24605001 chr3R_24605001 RAL-223 3116 chr3R 24618408 24618421 chr3R 24618535 24618548 6 127 28.0 11.5 19.8 0.3 140 chr3R 24618408 exon mld + chr3R 24618478 exon mld + chr3R 24618548 exon mld + chr3R_6_24615001 chr3R_24615001 RAL-223 3117 chr3R 24667555 24667591 chr3R 24667682 24667718 10 127 12.5 0.0 6.2 1.4 163 chr3R 24667555 intron slo + chr3R 24667636 intron slo + chr3R 24667718 intron slo + chr3R_10_24665001 chr3R_24665001 RAL-223 3118 chr3R 24683822 24683870 chr3R 24683948 24683996 8 125 8.0 7.5 7.8 0.9 174 chr3R 24683822 intron slo + chr3R 24683909 intron slo + chr3R 24683996 intron slo + chr3R_8_24680001 chr3R_24680001 RAL-223 3119 chr3R 24730051 24730120 chr3R 24732479 24732555 Doc 13 2429 8.0 6.0 7.0 1.6 2504 chr3R 24730051 intron tok + chr3R 24731303 intron tok + chr3R 24732555 intron tok + chr3R_13_24730001 chr3R_24730001 RAL-223 3120 chr3R 24742988 24743056 chr3R 24743123 24743191 23 135 0.0 7.5 3.8 4.8 203 chr3R 24742988 intron tok + chr3R 24743090 intron tok + chr3R 24743191 exon tok + chr3R_23_24740001 chr3R_24740001 RAL-223 3121 chr3R 24854838 24854912 chr3R 24854970 24855044 16 132 5.5 3.5 4.5 2.9 206 chr3R 24854838 3` UTR,3` UTR nct +,HdacX - chr3R 24854941 3` UTR HdacX - chr3R 24855044 3` UTR HdacX - chr3R_16_24850001 chr3R_24850001 RAL-223 3122 chr3R 24886755 24886757 chr3R 28073963 28073965 4 3187208 33.0 15.0 24.0 0.2 3187210 chr3R 24886755 intron CG31121 - chr3R 26480360 intron plum - chr3R 28073965 intron CG34362 + chr3R_4_26480001 chr3R_26480001 RAL-223 3123 chr3R 24893432 24893486 chr3R 24893562 24893615 12 130 7.5 10.0 8.8 1.2 183 chr3R 24893432 intron CG31121 - chr3R 24893524 intron CG31121 - chr3R 24893615 intron CG31121 - chr3R_12_24890001 chr3R_24890001 RAL-223 3124 chr3R 24912440 24912510 chr3R 24912572 24912642 14 132 5.5 0.5 3.0 3.5 202 chr3R 24912440 intergenic not near genes chr3R 24912541 intergenic CR44267 + chr3R 24912642 intergenic CR44267 + chr3R_14_24910001 chr3R_24910001 RAL-223 3125 chr3R 24927084 24927146 chr3R 24931925 24931984 Doc 22 4841 8.5 10.5 9.5 2.1 4900 chr3R 24927084 3` UTR Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931984 intergenic CG11771 + chr3R_22_24925001 chr3R_24925001 RAL-223 3126 chr3R 24949952 24949998 chr3R 24950085 24950131 19 132 10.0 12.0 11.0 1.6 179 chr3R 24949952 intergenic CG13646 + chr3R 24950042 intergenic not near genes chr3R 24950131 intergenic not near genes chr3R_19_24950001 chr3R_24950001 RAL-223 3127 chr3R 24973913 24973977 chr3R 24974039 24974087 11 124 10.0 9.5 9.8 1.0 174 chr3R 24973913 intergenic not near genes chr3R 24974000 intergenic not near genes chr3R 24974087 intergenic not near genes chr3R_11_24970001 chr3R_24970001 RAL-223 3128 chr3R 25004849 25004920 chr3R 25004982 25005053 26 133 8.5 7.0 7.8 3.0 204 chr3R 25004849 intron tnc + chr3R 25004951 intron tnc + chr3R 25005053 intron tnc + chr3R_26_25000001 chr3R_25000001 RAL-223 3129 chr3R 25027501 25027565 chr3R 25027764 25027828 37 262 10.0 9.5 9.8 3.4 327 chr3R 25027501 intron Hr96 + chr3R 25027664 intron Hr96 + chr3R 25027828 intron Hr96 + chr3R_37_25025001 chr3R_25025001 RAL-223 3130 chr3R 25126033 25126052 chr3R 25126677 25126696 4 644 32.0 48.0 40.0 0.1 663 chr3R 25126033 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126364 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126696 3` UTR,exon CG42503 -,Mocs2 - chr3R_4_25125001 chr3R_25125001 RAL-223 3131 chr3R 25136355 25136426 chr3R 25136485 25136556 16 130 7.0 3.0 5.0 2.7 201 chr3R 25136355 3` UTR Bili + chr3R 25136456 3` UTR Bili + chr3R 25136556 3` UTR Bili + chr3R_16_25135001 chr3R_25135001 RAL-223 3132 chr3R 25166313 25166395 chr3R 25166439 25166495 28 125 9.0 9.0 9.0 2.8 182 chr3R 25166313 intergenic not near genes chr3R 25166404 intergenic not near genes chr3R 25166495 intergenic not near genes chr3R_28_25165001 chr3R_25165001 RAL-223 3133 chr3R 25182121 25182136 chr3R 25182583 25182598 6 462 15.0 9.0 12.0 0.5 477 chr3R 25182121 intron lobo - chr3R 25182360 intron lobo - chr3R 25182598 intron lobo - chr3R_6_25180001 chr3R_25180001 RAL-223 3134 chr3R 25182137 25182164 chr3R 25182582 25182599 15 457 10.0 9.0 9.5 1.4 462 chr3R 25182137 intron lobo - chr3R 25182368 intron lobo - chr3R 25182599 intron lobo - chr3R_15_25180001 chr3R_25180001 RAL-223 3135 chr3R 25235651 25235723 chr3R 25235791 25235863 27 140 6.5 4.5 5.5 4.2 212 chr3R 25235651 intergenic CG10420 - chr3R 25235757 intergenic CG10420 - chr3R 25235863 intergenic CG10420 - chr3R_27_25235001 chr3R_25235001 RAL-223 3136 chr3R 25236139 25236215 chr3R 25236328 25236403 29 186 9.0 11.0 10.0 2.6 264 chr3R 25236139 intergenic not near genes chr3R 25236271 intergenic not near genes chr3R 25236403 intergenic not near genes chr3R_29_25235001 chr3R_25235001 RAL-223 3137 chr3R 25239177 25239249 chr3R 25239338 25239410 27 160 6.0 8.0 7.0 3.4 233 chr3R 25239177 intergenic CG11852 + chr3R 25239294 intergenic CG11852 + chr3R 25239410 intergenic not near genes chr3R_27_25235001 chr3R_25235001 RAL-223 3138 chr3R 25267677 25267752 chr3R 25267843 25267918 34 166 8.0 7.5 7.8 3.9 241 chr3R 25267677 exon,3` UTR RIOK2 +,CR45214 - chr3R 25267798 intron CR45214 - chr3R 25267918 intron CR45214 - chr3R_34_25265001 chr3R_25265001 RAL-223 3139 chr3R 25368428 25368500 chr3R 25368596 25368672 15 169 4.0 0.0 2.0 5.0 244 chr3R 25368428 intron Fur1 - chr3R 25368550 intron Fur1 - chr3R 25368672 intron Fur1 - chr3R_15_25365001 chr3R_25365001 RAL-223 3140 chr3R 25393466 25393524 chr3R 25393612 25393670 27 145 10.5 9.5 10.0 2.5 204 chr3R 25393466 intron Fur1 - chr3R 25393568 intron Fur1 - chr3R 25393670 intron Fur1 - chr3R_27_25390001 chr3R_25390001 RAL-223 3141 chr3R 25422027 25422098 chr3R 25422153 25422247 26 134 5.0 0.0 2.5 7.4 220 chr3R 25422027 intron Fur1 - chr3R 25422137 intron Fur1 - chr3R 25422247 intron Fur1 - chr3R_26_25420001 chr3R_25420001 RAL-223 3142 chr3R 25431381 25431447 chr3R 25431517 25431583 20 135 4.0 7.0 5.5 3.1 202 chr3R 25431381 intron Fur1 - chr3R 25431482 intron Fur1 - chr3R 25431583 intron Fur1 - chr3R_20_25430001 chr3R_25430001 RAL-223 3143 chr3R 25464447 25464522 chr3R 25464814 25464889 30 366 10.0 7.5 8.8 3.1 442 chr3R 25464447 intron Fur1 - chr3R 25464668 intron Fur1 - chr3R 25464889 intron Fur1 - chr3R_30_25460001 chr3R_25460001 RAL-223 3144 chr3R 25521860 25521908 chr3R 25521987 25522035 20 127 6.5 12.0 9.2 2.0 175 chr3R 25521860 intron msi + chr3R 25521948 intron msi + chr3R 25522035 intron msi + chr3R_20_25520001 chr3R_25520001 RAL-223 3145 chr3R 25527999 25528041 chr3R 25528152 25528194 19 153 12.5 9.5 11.0 1.6 195 chr3R 25527999 intron msi + chr3R 25528096 intron msi + chr3R 25528194 intron msi + chr3R_19_25525001 chr3R_25525001 RAL-223 3146 chr3R 25612605 25612669 chr3R 25612852 25612925 25 255 8.5 7.5 8.0 2.8 320 chr3R 25612605 intron Npl4 - chr3R 25612765 intron Npl4 - chr3R 25612925 intron Npl4 - chr3R_25_25610001 chr3R_25610001 RAL-223 3147 chr3R 25642552 25642619 chr3R 25642693 25642710 30 139 2.5 11.5 7.0 3.8 158 chr3R 25642552 intron jigr1 + chr3R 25642631 intron jigr1 + chr3R 25642710 intron jigr1 + chr3R_30_25640001 chr3R_25640001 RAL-223 3148 chr3R 25671193 25671225 chr3R 25671341 25671375 8 147 24.5 6.5 15.5 0.5 182 chr3R 25671193 intron Lgr3 + chr3R 25671284 intron Lgr3 + chr3R 25671375 intron Lgr3 + chr3R_8_25670001 chr3R_25670001 RAL-223 3149 chr3R 25671235 25671272 chr3R 25671380 25671422 18 149 9.5 10.5 10.0 1.6 187 chr3R 25671235 intron Lgr3 + chr3R 25671328 intron Lgr3 + chr3R 25671422 intron Lgr3 + chr3R_18_25670001 chr3R_25670001 RAL-223 3150 chr3R 25689084 25689107 chr3R 25689242 25689265 8 158 18.5 9.0 13.8 0.5 181 chr3R 25689084 intergenic not near genes chr3R 25689174 intergenic not near genes chr3R 25689265 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-223 3151 chr3R 25689121 25689160 chr3R 25689258 25689284 14 153 10.0 12.5 11.2 1.1 163 chr3R 25689121 intergenic not near genes chr3R 25689202 intergenic not near genes chr3R 25689284 intergenic not near genes chr3R_14_25685001 chr3R_25685001 RAL-223 3152 chr3R 25720771 25720831 chr3R 25720913 25720966 16 138 0.0 14.0 7.0 2.0 195 chr3R 25720771 intron LpR2 - chr3R 25720868 intron LpR2 - chr3R 25720966 intron LpR2 - chr3R_16_25720001 chr3R_25720001 RAL-223 3153 chr3R 25725784 25725854 chr3R 25734994 25735063 roo 24 9209 6.0 9.5 7.8 2.7 9279 chr3R 25725784 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735063 intron LpR2 - chr3R_24_25730001 chr3R_25730001 RAL-223 3154 chr3R 25764049 25764057 chr3R 25764178 25764186 4 129 10.5 0.0 5.2 0.6 137 chr3R 25764049 intergenic not near genes chr3R 25764118 intergenic not near genes chr3R 25764186 intergenic not near genes chr3R_4_25760001 chr3R_25760001 RAL-223 3155 chr3R 25796342 25796405 chr3R 25796471 25796534 11 129 6.5 0.0 3.2 2.6 192 chr3R 25796342 intergenic CR43847 - chr3R 25796438 intergenic CR43847 - chr3R 25796534 intergenic CR43847 - chr3R_11_25795001 chr3R_25795001 RAL-223 3156 chr3R 25832660 25832715 chr3R 25841892 25841947 roo 19 9231 5.0 13.5 9.2 1.9 9287 chr3R 25832660 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841947 exon alpha4GT2 + chr3R_19_25835001 chr3R_25835001 RAL-223 3157 chr3R 25896234 25896286 chr3R 25896366 25896415 14 132 10.0 5.0 7.5 1.6 181 chr3R 25896234 intron CG5948 + chr3R 25896324 intron CG5948 + chr3R 25896415 intron CG5948 + chr3R_14_25895001 chr3R_25895001 RAL-223 3158 chr3R 25932694 25932751 chr3R 25933136 25933193 27 442 8.5 0.0 4.2 5.2 499 chr3R 25932694 intron CCAP-R - chr3R 25932944 intron CCAP-R - chr3R 25933193 intron CCAP-R - chr3R_27_25930001 chr3R_25930001 RAL-223 3159 chr3R 25997207 25997267 chr3R 25997344 25997404 9 137 7.5 6.0 6.8 1.2 197 chr3R 25997207 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997306 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997404 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_9_25995001 chr3R_25995001 RAL-223 3160 chr3R 26013807 26013865 chr3R 26013937 26013995 26 130 12.0 8.0 10.0 2.4 188 chr3R 26013807 intergenic not near genes chr3R 26013901 intergenic not near genes chr3R 26013995 intergenic not near genes chr3R_26_26010001 chr3R_26010001 RAL-223 3161 chr3R 26093797 26093869 chr3R 26093925 26093997 36 127 13.0 7.5 10.2 3.2 200 chr3R 26093797 intron dys - chr3R 26093897 intron dys - chr3R 26093997 intron dys - chr3R_36_26090001 chr3R_26090001 RAL-223 3162 chr3R 26108781 26108793 chr3R 26117414 26117426 Tirant 5 8633 20.5 0.0 10.2 0.4 8645 chr3R 26108781 5` UTR CG31324 + chr3R 26113104 intron CG31324 + chr3R 26117426 intron CG31324 + chr3R_5_26110001 chr3R_26110001 RAL-223 3163 chr3R 26121897 26121977 chr3R 26122044 26122124 20 146 9.0 7.5 8.2 2.2 227 chr3R 26121897 intron CG31324 + chr3R 26122010 intron CG31324 + chr3R 26122124 intron CG31324 + chr3R_20_26120001 chr3R_26120001 RAL-223 3164 chr3R 26122413 26122480 chr3R 26122539 26122605 54 125 23.5 22.5 23.0 2.2 192 chr3R 26122413 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122605 intron CG31324 + chr3R_54_26120001 chr3R_26120001 RAL-223 3165 chr3R 26119151 26119186 chr3R 26122592 26122663 26 3444 64.5 36.5 50.5 0.5 3512 chr3R 26119151 intron CG31324 + chr3R 26120907 intron CG31324 + chr3R 26122663 intron CG31324 + chr3R_26_26120001 chr3R_26120001 RAL-223 3166 chr3R 26215755 26215789 chr3R 26221746 26221794 297 8 6004 7.0 9.0 8.0 0.9 6039 chr3R 26215755 intergenic not near genes chr3R 26218774 intergenic not near genes chr3R 26221794 intergenic not near genes chr3R_8_26215001 chr3R_26215001 RAL-223 3167 chr3R 26241203 26241273 chr3R 26241344 26241414 25 140 7.5 8.0 7.8 2.8 211 chr3R 26241203 intron CR42745 + chr3R 26241308 intron CR42745 + chr3R 26241414 intron CR42745 + chr3R_25_26240001 chr3R_26240001 RAL-223 3168 chr3R 26265777 26265842 chr3R 26265915 26265980 28 136 7.0 8.0 7.5 3.3 203 chr3R 26265777 intron CG6154 + chr3R 26265878 intron CG6154 + chr3R 26265980 intron CG6154 + chr3R_28_26265001 chr3R_26265001 RAL-223 3169 chr3R 26314811 26314878 chr3R 26315228 26315295 24 417 7.5 11.5 9.5 2.3 484 chr3R 26314811 intergenic not near genes chr3R 26315053 intergenic not near genes chr3R 26315295 intergenic not near genes chr3R_24_26315001 chr3R_26315001 RAL-223 3170 chr3R 26326646 26326681 chr3R 26326774 26326810 8 127 7.5 6.5 7.0 1.0 164 chr3R 26326646 intron CG33970 + chr3R 26326728 intron CG33970 + chr3R 26326810 intron CG33970 + chr3R_8_26325001 chr3R_26325001 RAL-223 3171 chr3R 26332841 26332913 chr3R 26332980 26333051 28 137 5.0 9.0 7.0 3.5 210 chr3R 26332841 intron CG33970 + chr3R 26332946 intron CG33970 + chr3R 26333051 intron CG33970 + chr3R_28_26330001 chr3R_26330001 RAL-223 3172 chr3R 26365074 26365138 chr3R 26365209 26365272 17 134 8.5 7.0 7.8 1.9 198 chr3R 26365074 intergenic not near genes chr3R 26365173 intergenic not near genes chr3R 26365272 intergenic not near genes chr3R_17_26365001 chr3R_26365001 RAL-223 3173 chr3R 26376278 26376353 chr3R 26385488 26385563 roo 27 9209 7.5 10.0 8.8 2.8 9285 chr3R 26376278 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385563 intergenic not near genes chr3R_27_26380001 chr3R_26380001 RAL-223 3174 chr3R 26405871 26405930 chr3R 26405997 26406056 22 125 0.0 0.0 0.0 22.0 185 chr3R 26405871 intergenic not near genes chr3R 26405964 intergenic not near genes chr3R 26406056 intergenic not near genes chr3R_22_26405001 chr3R_26405001 RAL-223 3175 chr3R 26417147 26417180 chr3R 26417271 26417309 11 129 14.5 8.5 11.5 0.9 162 chr3R 26417147 intergenic not near genes chr3R 26417228 intergenic not near genes chr3R 26417309 intergenic not near genes chr3R_11_26415001 chr3R_26415001 RAL-223 3176 chr3R 26417184 26417203 chr3R 26417269 26417332 12 121 9.0 8.0 8.5 1.3 148 chr3R 26417184 intergenic not near genes chr3R 26417258 intergenic not near genes chr3R 26417332 intergenic not near genes chr3R_12_26415001 chr3R_26415001 RAL-223 3177 chr3R 26464913 26464970 chr3R 26465047 26465104 24 134 10.0 9.5 9.8 2.2 191 chr3R 26464913 intron CG5455 + chr3R 26465008 intron CG5455 + chr3R 26465104 intron CG5455 + chr3R_24_26465001 chr3R_26465001 RAL-223 3178 chr3R 26510474 26510535 chr3R 26519579 26519608 roo 25 9104 3.5 8.0 5.8 3.7 9134 chr3R 26510474 intron plum - chr3R 26515041 intron plum - chr3R 26519608 intron,5` UTR plum -,CR45226 + chr3R_25_26515001 chr3R_26515001 RAL-223 3179 chr3R 26545958 26546020 chr3R 26546193 26546252 15 232 6.0 10.0 8.0 1.7 294 chr3R 26545958 intron scrib + chr3R 26546105 intron scrib + chr3R 26546252 intron scrib + chr3R_15_26545001 chr3R_26545001 RAL-223 3180 chr3R 26558284 26558346 chr3R 26565646 26565707 Stalker4 27 7357 10.0 10.5 10.2 2.4 7423 chr3R 26558284 intron scrib + chr3R 26561996 intron scrib + chr3R 26565707 intron scrib + chr3R_27_26560001 chr3R_26560001 RAL-223 3181 chr3R 26568062 26568072 chr3R 26568194 26568203 6 132 0.0 17.5 8.8 0.6 141 chr3R 26568062 intron scrib + chr3R 26568132 intron scrib + chr3R 26568203 intron scrib + chr3R_6_26565001 chr3R_26565001 RAL-223 3182 chr3R 26641588 26641592 chr3R 26641725 26641729 4 137 18.5 9.5 14.0 0.3 141 chr3R 26641588 intergenic not near genes chr3R 26641658 intergenic not near genes chr3R 26641729 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-223 3183 chr3R 26641600 26641663 chr3R 26641723 26641786 18 129 6.5 9.5 8.0 2.0 186 chr3R 26641600 intergenic not near genes chr3R 26641693 intergenic not near genes chr3R 26641786 intergenic not near genes chr3R_18_26640001 chr3R_26640001 RAL-223 3184 chr3R 26642701 26642751 chr3R 26643145 26643193 jockey 27 443 13.5 11.5 12.5 2.0 492 chr3R 26642701 intergenic not near genes chr3R 26642947 intergenic not near genes chr3R 26643193 intergenic not near genes chr3R_27_26640001 chr3R_26640001 RAL-223 3185 chr3R 26770191 26770263 chr3R 26770318 26770390 20 127 10.5 9.0 9.8 1.9 199 chr3R 26770191 intergenic CR45563 + chr3R 26770290 intergenic CR45563 + chr3R 26770390 intergenic not near genes chr3R_20_26770001 chr3R_26770001 RAL-223 3186 chr3R 26810505 26810574 chr3R 26811040 26811109 roo 23 535 9.0 8.5 8.8 2.3 604 chr3R 26810505 intron Tl + chr3R 26810807 intron Tl + chr3R 26811109 intron Tl + chr3R_23_26810001 chr3R_26810001 RAL-223 3187 chr3R 26845532 26845535 chr3R 26845662 26845665 5 130 20.5 12.5 16.5 0.3 133 chr3R 26845532 intron Lerp - chr3R 26845598 intron Lerp - chr3R 26845665 intron Lerp - chr3R_5_26845001 chr3R_26845001 RAL-223 3188 chr3R 26845543 26845592 chr3R 26845658 26845722 25 129 9.0 11.5 10.2 2.2 179 chr3R 26845543 intron Lerp - chr3R 26845632 intron Lerp - chr3R 26845722 intron Lerp - chr3R_25_26845001 chr3R_26845001 RAL-223 3189 chr3R 27007360 27007429 chr3R 27016545 27016614 roo 28 9183 6.0 11.0 8.5 2.9 9254 chr3R 27007360 intron RYa-R + chr3R 27011987 intron RYa-R + chr3R 27016614 intron RYa-R + chr3R_28_27010001 chr3R_27010001 RAL-223 3190 chr3R 27019462 27019530 chr3R 27019607 27019676 29 145 7.5 12.5 10.0 2.6 214 chr3R 27019462 intron,exon RYa-R +,CG17191 - chr3R 27019569 intron,exon RYa-R +,CG17191 - chr3R 27019676 intron,intron RYa-R +,CG17191 - chr3R_29_27015001 chr3R_27015001 RAL-223 3191 chr3R 27027632 27027641 chr3R 27027766 27027775 4 134 21.5 0.5 11.0 0.3 143 chr3R 27027632 intron RYa-R + chr3R 27027704 intron RYa-R + chr3R 27027775 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-223 3192 chr3R 27027649 27027698 chr3R 27027765 27027830 13 132 11.0 0.5 5.8 1.9 181 chr3R 27027649 intron RYa-R + chr3R 27027740 intron RYa-R + chr3R 27027830 intron RYa-R + chr3R_13_27025001 chr3R_27025001 RAL-223 3193 chr3R 27028679 27028751 chr3R 27028803 27028803 27 125 8.5 8.0 8.2 2.9 124 chr3R 27028679 intron RYa-R + chr3R 27028741 intron RYa-R + chr3R 27028803 intron RYa-R + chr3R_27_27025001 chr3R_27025001 RAL-223 3194 chr3R 27051841 27051897 chr3R 27051969 27052025 24 126 0.0 9.0 4.5 4.4 184 chr3R 27051841 intron RYa-R + chr3R 27051933 intron RYa-R + chr3R 27052025 intron RYa-R + chr3R_24_27050001 chr3R_27050001 RAL-223 3195 chr3R 27130013 27130026 chr3R 27130149 27130162 9 136 10.5 9.5 10.0 0.8 149 chr3R 27130013 intron CG6051 - chr3R 27130088 intron CG6051 - chr3R 27130162 intron CG6051 - chr3R_9_27130001 chr3R_27130001 RAL-223 3196 chr3R 27133472 27133479 chr3R 27133639 27133646 6 167 20.5 11.5 16.0 0.4 174 chr3R 27133472 intron CG6051 - chr3R 27133559 intron CG6051 - chr3R 27133646 intron CG6051 - chr3R_6_27130001 chr3R_27130001 RAL-223 3197 chr3R 27133480 27133544 chr3R 27133637 27133707 28 166 5.0 11.5 8.2 3.0 227 chr3R 27133480 intron CG6051 - chr3R 27133594 intron CG6051 - chr3R 27133707 intron CG6051 - chr3R_28_27130001 chr3R_27130001 RAL-223 3198 chr3R 27140466 27140538 chr3R 27148126 27148184 412 31 7659 9.5 12.0 10.8 2.6 7718 chr3R 27140466 intron CG6051 - chr3R 27144325 intron CG6051 - chr3R 27148184 intron CG6051 - chr3R_31_27140001 chr3R_27140001 RAL-223 3199 chr3R 27200111 27200187 chr3R 27200248 27200261 18 130 10.0 8.5 9.2 1.8 150 chr3R 27200111 intergenic not near genes chr3R 27200186 intergenic not near genes chr3R 27200261 intergenic not near genes chr3R_18_27200001 chr3R_27200001 RAL-223 3200 chr3R 27299679 27299727 chr3R 27299811 27299859 21 131 6.5 15.5 11.0 1.8 180 chr3R 27299679 intron CG3339 - chr3R 27299769 intron CG3339 - chr3R 27299859 intron CG3339 - chr3R_21_27295001 chr3R_27295001 RAL-223 3201 chr3R 27300481 27300509 chr3R 27300608 27300636 12 126 0.0 14.0 7.0 1.5 155 chr3R 27300481 intron CG3339 - chr3R 27300558 intron CG3339 - chr3R 27300636 intron CG3339 - chr3R_12_27300001 chr3R_27300001 RAL-223 3202 chr3R 27300811 27300876 chr3R 27300953 27301017 18 139 8.5 0.5 4.5 3.3 206 chr3R 27300811 intron CG3339 - chr3R 27300914 intron CG3339 - chr3R 27301017 intron CG3339 - chr3R_18_27300001 chr3R_27300001 RAL-223 3203 chr3R 27326229 27326296 chr3R 27326368 27326400 20 136 7.5 9.5 8.5 2.1 171 chr3R 27326229 intergenic not near genes chr3R 27326314 intergenic not near genes chr3R 27326400 intergenic not near genes chr3R_20_27325001 chr3R_27325001 RAL-223 3204 chr3R 27329430 27329498 chr3R 27329556 27329625 21 126 8.0 7.0 7.5 2.5 195 chr3R 27329430 intergenic CG3330 - chr3R 27329528 intergenic CG3330 - chr3R 27329625 intergenic CG3330 - chr3R_21_27325001 chr3R_27325001 RAL-223 3205 chr3R 27342752 27342821 chr3R 27351383 27351452 Tirant 36 8631 8.0 10.0 9.0 3.6 8700 chr3R 27342752 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351452 intron CG42534 + chr3R_36_27345001 chr3R_27345001 RAL-223 3206 chr3R 27353278 27353321 chr3R 27353413 27353456 16 135 15.0 9.5 12.2 1.2 178 chr3R 27353278 intron CG42534 + chr3R 27353367 intron CG42534 + chr3R 27353456 intron CG42534 + chr3R_16_27350001 chr3R_27350001 RAL-223 3207 chr3R 27452538 27452610 chr3R 27452768 27452840 30 230 4.0 8.5 6.2 4.2 302 chr3R 27452538 intergenic not near genes chr3R 27452689 intergenic not near genes chr3R 27452840 intergenic not near genes chr3R_30_27450001 chr3R_27450001 RAL-223 3208 chr3R 27469995 27470072 chr3R 27470707 27470771 28 702 7.0 6.0 6.5 3.7 776 chr3R 27469995 intergenic not near genes chr3R 27470383 intergenic not near genes chr3R 27470771 intergenic not near genes chr3R_28_27470001 chr3R_27470001 RAL-223 3209 chr3R 27492334 27492408 chr3R 27492471 27492548 26 136 0.0 6.5 3.2 6.2 214 chr3R 27492334 intergenic not near genes chr3R 27492441 intergenic not near genes chr3R 27492548 intergenic not near genes chr3R_26_27490001 chr3R_27490001 RAL-223 3210 chr3R 27496547 27496601 chr3R 27496702 27496756 16 155 11.0 7.5 9.2 1.6 209 chr3R 27496547 intergenic not near genes chr3R 27496652 intergenic not near genes chr3R 27496756 intergenic not near genes chr3R_16_27495001 chr3R_27495001 RAL-223 3211 chr3R 27521105 27521189 chr3R 27530364 27530452 roo 11 9260 4.0 0.5 2.2 3.4 9347 chr3R 27521105 intron CG12885 + chr3R 27525778 intron CG12885 + chr3R 27530452 intron CG12885 + chr3R_11_27525001 chr3R_27525001 RAL-223 3212 chr3R 27541900 27541953 chr3R 27542031 27542084 18 131 16.5 16.5 16.5 1.0 184 chr3R 27541900 intergenic not near genes chr3R 27541992 intergenic not near genes chr3R 27542084 intergenic Gr98b + chr3R_18_27540001 chr3R_27540001 RAL-223 3213 chr3R 27619662 27619728 chr3R 27619827 27619902 26 164 10.5 4.5 7.5 3.1 240 chr3R 27619662 intron Tusp + chr3R 27619782 intron Tusp + chr3R 27619902 intron Tusp + chr3R_26_27615001 chr3R_27615001 RAL-223 3214 chr3R 27644218 27644277 chr3R 27644350 27644419 32 140 9.0 7.0 8.0 3.6 201 chr3R 27644218 intron tau - chr3R 27644318 intron tau - chr3R 27644419 intron tau - chr3R_32_27640001 chr3R_27640001 RAL-223 3215 chr3R 27679890 27679915 chr3R 27680063 27680088 9 172 21.5 11.5 16.5 0.5 198 chr3R 27679890 exon CG12883 + chr3R 27679989 3` UTR CG12883 + chr3R 27680088 3` UTR CG12883 + chr3R_9_27675001 chr3R_27675001 RAL-223 3216 chr3R 27679917 27679968 chr3R 27680060 27680121 26 170 7.0 11.0 9.0 2.6 204 chr3R 27679917 exon CG12883 + chr3R 27680019 3` UTR CG12883 + chr3R 27680121 3` UTR CG12883 + chr3R_26_27680001 chr3R_27680001 RAL-223 3217 chr3R 27705307 27705390 chr3R 27705437 27705509 32 128 10.0 7.0 8.5 3.4 202 chr3R 27705307 exon CG12428 - chr3R 27705408 intron CG12428 - chr3R 27705509 exon CG12428 - chr3R_32_27705001 chr3R_27705001 RAL-223 3218 chr3R 27725549 27725596 chr3R 27731042 27731089 I-element 11 5492 8.5 12.0 10.2 1.0 5540 chr3R 27725549 intergenic not near genes chr3R 27728319 intergenic not near genes chr3R 27731089 intergenic not near genes chr3R_11_27725001 chr3R_27725001 RAL-223 3219 chr3R 27779219 27779247 chr3R 27779349 27779377 9 127 15.0 8.0 11.5 0.7 158 chr3R 27779219 exon CG34353 - chr3R 27779298 intron CG34353 - chr3R 27779377 intron CG34353 - chr3R_9_27775001 chr3R_27775001 RAL-223 3220 chr3R 27779249 27779283 chr3R 27779348 27779413 10 125 9.0 7.5 8.2 1.1 164 chr3R 27779249 exon CG34353 - chr3R 27779331 intron CG34353 - chr3R 27779413 intron CG34353 - chr3R_10_27775001 chr3R_27775001 RAL-223 3221 chr3R 27791604 27791648 chr3R 27794794 27794837 Rt1c 15 3198 11.0 10.5 10.8 1.3 3233 chr3R 27791604 intron CG34353 - chr3R 27793220 intron CG34353 - chr3R 27794837 intron CG34353 - chr3R_15_27790001 chr3R_27790001 RAL-223 3222 chr3R 27799885 27799964 chr3R 27800022 27800096 25 133 7.0 4.5 5.8 3.7 211 chr3R 27799885 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800096 intron CG34353 - chr3R_25_27795001 chr3R_27795001 RAL-223 3223 chr3R 27800646 27800719 chr3R 27800791 27800864 24 143 5.5 7.0 6.2 3.3 218 chr3R 27800646 intron CG34353 - chr3R 27800755 intron CG34353 - chr3R 27800864 intron CG34353 - chr3R_24_27800001 chr3R_27800001 RAL-223 3224 chr3R 27823620 27823692 chr3R 27823755 27823827 25 135 6.5 5.5 6.0 3.6 207 chr3R 27823620 intron CG34353 - chr3R 27823724 intron CG34353 - chr3R 27823827 intron CG34353 - chr3R_25_27820001 chr3R_27820001 RAL-223 3225 chr3R 27856721 27856785 chr3R 27858254 27858313 hopper2 27 1533 10.5 12.5 11.5 2.2 1592 chr3R 27856721 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858313 intron CG34353 - chr3R_27_27855001 chr3R_27855001 RAL-223 3226 chr3R 27862915 27862975 chr3R 27868270 27868330 Transpac 21 5354 12.0 12.5 12.2 1.6 5415 chr3R 27862915 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868330 intron CG34353 - chr3R_21_27865001 chr3R_27865001 RAL-223 3227 chr3R 27875658 27875724 chr3R 27882763 27882829 297 21 7105 8.0 10.5 9.2 2.1 7171 chr3R 27875658 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882829 intron CG34353 - chr3R_21_27875001 chr3R_27875001 RAL-223 3228 chr3R 27891498 27891552 chr3R 27891717 27891796 5 234 4.0 0.0 2.0 1.7 298 chr3R 27891498 intron CG34353 - chr3R 27891647 intron CG34353 - chr3R 27891796 intron CG34353 - chr3R_5_27890001 chr3R_27890001 RAL-223 3229 chr3R 27994437 27994488 chr3R 27994548 27994591 23 134 7.5 5.0 6.2 3.2 154 chr3R 27994437 intergenic not near genes chr3R 27994514 intergenic not near genes chr3R 27994591 intergenic not near genes chr3R_23_27990001 chr3R_27990001 RAL-223 3230 chr3R 28002863 28002927 chr3R 28002990 28003054 33 126 7.0 9.0 8.0 3.7 191 chr3R 28002863 intergenic not near genes chr3R 28002958 intergenic not near genes chr3R 28003054 intergenic not near genes chr3R_33_28000001 chr3R_28000001 RAL-223 3231 chr3R 28017910 28017983 chr3R 28018051 28018124 18 140 4.5 5.5 5.0 3.0 214 chr3R 28017910 intergenic not near genes chr3R 28018017 intergenic not near genes chr3R 28018124 intergenic not near genes chr3R_18_28015001 chr3R_28015001 RAL-223 3232 chr3R 28068474 28068480 chr3R 28073966 28073972 I-element 4 5492 0.0 15.0 7.5 0.5 5498 chr3R 28068474 intron CG34362 + chr3R 28071223 intron CG34362 + chr3R 28073972 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-223 3233 chr3R 28068484 28068516 chr3R 28073951 28074008 I-element 11 5489 0.0 12.5 6.2 1.5 5524 chr3R 28068484 intron CG34362 + chr3R 28071246 intron CG34362 + chr3R 28074008 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-223 3234 chr3R 28132447 28132520 chr3R 28132579 28132642 23 131 7.0 3.5 5.2 3.7 195 chr3R 28132447 intergenic not near genes chr3R 28132544 intergenic not near genes chr3R 28132642 intergenic not near genes chr3R_23_28130001 chr3R_28130001 RAL-223 3235 chr3R 28137646 28137711 chr3R 28137776 28137826 31 129 7.0 11.0 9.0 3.1 180 chr3R 28137646 intergenic not near genes chr3R 28137736 intergenic not near genes chr3R 28137826 intergenic not near genes chr3R_31_28135001 chr3R_28135001 RAL-223 3236 chr3R 28152314 28152362 chr3R 28152441 28152489 15 127 11.5 9.5 10.5 1.3 175 chr3R 28152314 intron CG34354 + chr3R 28152402 intron CG34354 + chr3R 28152489 intron CG34354 + chr3R_15_28150001 chr3R_28150001 RAL-223 3237 chr3R 28164844 28164909 chr3R 28164972 28165037 12 128 4.0 0.5 2.2 3.8 193 chr3R 28164844 intron CG34354 + chr3R 28164940 intron CG34354 + chr3R 28165037 intron CG34354 + chr3R_12_28160001 chr3R_28160001 RAL-223 3238 chr3R 28172822 28172856 chr3R 28173030 28173064 9 207 10.0 3.0 6.5 1.2 242 chr3R 28172822 intron CG34354 + chr3R 28172943 intron CG34354 + chr3R 28173064 intron CG34354 + chr3R_9_28170001 chr3R_28170001 RAL-223 3239 chr3R 28173631 28173685 chr3R 28181111 28181165 mdg1 19 7480 7.0 8.0 7.5 2.2 7534 chr3R 28173631 intron CG34354 + chr3R 28177398 intron CG34354 + chr3R 28181165 intron CG34354 + chr3R_19_28175001 chr3R_28175001 RAL-223 3240 chr3R 28253299 28253359 chr3R 28255859 28255919 jockey 18 2558 10.5 9.5 10.0 1.6 2620 chr3R 28253299 intergenic not near genes chr3R 28254609 intergenic not near genes chr3R 28255919 intergenic not near genes chr3R_18_28250001 chr3R_28250001 RAL-223 3241 chr3R 28286271 28286347 chr3R 28286409 28286485 14 135 8.5 3.5 6.0 2.0 214 chr3R 28286271 intergenic not near genes chr3R 28286378 intergenic not near genes chr3R 28286485 intergenic not near genes chr3R_14_28285001 chr3R_28285001 RAL-223 3242 chr3R 28302067 28302122 chr3R 28302556 28302611 jockey 28 489 9.0 7.5 8.2 3.0 544 chr3R 28302067 intergenic not near genes chr3R 28302339 intergenic not near genes chr3R 28302611 intergenic not near genes chr3R_28_28300001 chr3R_28300001 RAL-223 3243 chr3R 28308027 28308076 chr3R 28308154 28308198 16 126 11.5 9.5 10.5 1.4 171 chr3R 28308027 intergenic not near genes chr3R 28308112 intergenic not near genes chr3R 28308198 intergenic not near genes chr3R_16_28305001 chr3R_28305001 RAL-223 3244 chr3R 28331489 28331523 chr3R 28331618 28331652 19 129 5.0 9.5 7.2 2.3 163 chr3R 28331489 intron larp - chr3R 28331570 intron larp - chr3R 28331652 intron larp - chr3R_19_28330001 chr3R_28330001 RAL-223 3245 chr3R 28344065 28344076 chr3R 28344172 28344203 5 121 10.0 6.0 8.0 0.6 138 chr3R 28344065 exon Moca-cyp + chr3R 28344134 exon Moca-cyp + chr3R 28344203 exon Moca-cyp + chr3R_5_28340001 chr3R_28340001 RAL-223 3246 chr3R 28352469 28352537 chr3R 28352857 28352927 26 390 6.5 7.5 7.0 3.2 458 chr3R 28352469 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352927 exon Or98b + chr3R_26_28350001 chr3R_28350001 RAL-223 3247 chr3R 28358812 28358881 chr3R 28359202 28359271 36 388 6.0 14.5 10.2 3.2 459 chr3R 28358812 intergenic not near genes chr3R 28359042 intergenic not near genes chr3R 28359271 intergenic not near genes chr3R_36_28355001 chr3R_28355001 RAL-223 3248 chr3R 28390071 28390084 chr3R 28390198 28390212 5 128 10.5 10.0 10.2 0.4 141 chr3R 28390071 intergenic not near genes chr3R 28390142 intergenic not near genes chr3R 28390212 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-223 3249 chr3R 28390085 28390138 chr3R 28390196 28390266 19 119 5.5 10.0 7.8 2.2 181 chr3R 28390085 intergenic not near genes chr3R 28390176 intergenic not near genes chr3R 28390266 intergenic not near genes chr3R_19_28390001 chr3R_28390001 RAL-223 3250 chr3R 28393655 28393726 chr3R 28393805 28393876 30 149 6.5 10.0 8.2 3.3 221 chr3R 28393655 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393876 intergenic not near genes chr3R_30_28390001 chr3R_28390001 RAL-223 3251 chr3R 28407669 28407724 chr3R 28407805 28407860 16 136 6.5 11.0 8.8 1.6 191 chr3R 28407669 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407860 intergenic not near genes chr3R_16_28405001 chr3R_28405001 RAL-223 3252 chr3R 28465252 28465319 chr3R 28465419 28465486 17 167 6.0 5.0 5.5 2.6 234 chr3R 28465252 intron beat-VI + chr3R 28465369 intron beat-VI + chr3R 28465486 intron beat-VI + chr3R_17_28465001 chr3R_28465001 RAL-223 3253 chr3R 28479096 28479167 chr3R 28479229 28479300 20 133 10.5 8.5 9.5 1.9 204 chr3R 28479096 intergenic not near genes chr3R 28479198 intergenic not near genes chr3R 28479300 intergenic not near genes chr3R_20_28475001 chr3R_28475001 RAL-223 3254 chr3R 28480298 28480329 chr3R 28480429 28480460 7 131 6.0 14.0 10.0 0.6 162 chr3R 28480298 intergenic not near genes chr3R 28480379 intergenic not near genes chr3R 28480460 intergenic not near genes chr3R_7_28480001 chr3R_28480001 RAL-223 3255 chr3R 28484353 28484425 chr3R 28486220 28486292 118 1868 139.0 144.0 141.5 0.8 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_118_28485001 chr3R_28485001 RAL-223 3256 chr3R 28625444 28625466 chr3R 28625585 28625607 9 140 16.0 6.5 11.2 0.7 163 chr3R 28625444 intron CG10011 - chr3R 28625526 intron CG10011 - chr3R 28625607 intron CG10011 - chr3R_9_28625001 chr3R_28625001 RAL-223 3257 chr3R 28625470 28625509 chr3R 28625575 28625625 15 134 6.0 5.0 5.5 2.3 155 chr3R 28625470 intron CG10011 - chr3R 28625548 intron CG10011 - chr3R 28625625 intron CG10011 - chr3R_15_28625001 chr3R_28625001 RAL-223 3258 chr3R 28670599 28670647 chr3R 28670735 28670783 21 136 4.5 11.0 7.8 2.4 184 chr3R 28670599 intergenic CG9989 +,CG33346 + chr3R 28670691 intergenic CG9989 +,CG33346 + chr3R 28670783 exon CG9989 + chr3R_21_28670001 chr3R_28670001 RAL-223 3259 chr3R 28702892 28702963 chr3R 28703016 28703097 29 133 4.0 7.0 5.5 4.5 205 chr3R 28702892 intron htt + chr3R 28702994 intron htt + chr3R 28703097 intron htt + chr3R_29_28700001 chr3R_28700001 RAL-223 3260 chr3R 28753255 28753274 chr3R 28755108 28755127 6 1853 15.5 7.0 11.2 0.5 1872 chr3R 28753255 intergenic not near genes chr3R 28754191 intergenic not near genes chr3R 28755127 intergenic CG9997 - chr3R_6_28750001 chr3R_28750001 RAL-223 3261 chr3R 28753278 28753325 chr3R 28755105 28755178 16 1849 6.0 6.5 6.2 2.2 1900 chr3R 28753278 intergenic not near genes chr3R 28754228 intergenic not near genes chr3R 28755178 intergenic CG9997 - chr3R_16_28750001 chr3R_28750001 RAL-223 3262 chr3R 28758244 28758255 chr3R 28763911 28763922 roo 8 5667 15.5 0.0 7.8 0.9 5678 chr3R 28758244 intergenic aqrs - chr3R 28761083 intergenic not near genes chr3R 28763922 intergenic not near genes chr3R_8_28760001 chr3R_28760001 RAL-223 3263 chr3R 28758272 28758319 chr3R 28771329 28771376 Stalker4 15 13057 3.5 7.0 5.2 2.4 13104 chr3R 28758272 intergenic aqrs - chr3R 28764824 intergenic not near genes chr3R 28771376 intergenic not near genes chr3R_15_28760001 chr3R_28760001 RAL-223 3264 chr3R 28785340 28785407 chr3R 28785475 28785542 37 135 13.0 13.0 13.0 2.6 202 chr3R 28785340 intergenic not near genes chr3R 28785441 intergenic not near genes chr3R 28785542 intergenic not near genes chr3R_37_28785001 chr3R_28785001 RAL-223 3265 chr3R 28792830 28792861 chr3R 28797975 28798006 jockey 14 5144 18.0 7.5 12.8 1.0 5176 chr3R 28792830 intergenic not near genes chr3R 28795418 intergenic not near genes chr3R 28798006 intergenic not near genes chr3R_14_28795001 chr3R_28795001 RAL-223 3266 chr3R 28792862 28792897 chr3R 28797973 28798040 jockey 14 5138 9.5 7.5 8.5 1.5 5178 chr3R 28792862 intergenic not near genes chr3R 28795451 intergenic not near genes chr3R 28798040 intergenic not near genes chr3R_14_28795001 chr3R_28795001 RAL-223 3267 chr3R 28811529 28811596 chr3R 28811725 28811787 19 196 9.0 9.0 9.0 1.9 258 chr3R 28811529 intergenic wdn - chr3R 28811658 intergenic wdn -,CG1646 + chr3R 28811787 intergenic CG1646 +,wdn - chr3R_19_28810001 chr3R_28810001 RAL-223 3268 chr3R 28830841 28830916 chr3R 28830969 28831044 37 127 13.0 13.0 13.0 2.6 203 chr3R 28830841 intron WASp - chr3R 28830942 intron WASp - chr3R 28831044 intron WASp - chr3R_37_28830001 chr3R_28830001 RAL-223 3269 chr3R 21907534 21907536 chr3R 28831799 28831802 42 6924266 28.5 35.0 31.8 1.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_42_25365001 chr3R_25365001 RAL-223 3270 chr3R 28862098 28862172 chr3R 28862225 28862299 42 127 11.0 8.0 9.5 4.0 201 chr3R 28862098 intron spg + chr3R 28862198 intron spg + chr3R 28862299 intron spg + chr3R_42_28860001 chr3R_28860001 RAL-223 3271 chr3R 28938465 28938478 chr3R 28938615 28938628 5 150 14.5 0.0 7.2 0.6 163 chr3R 28938465 intron CG14521 - chr3R 28938546 intron CG14521 - chr3R 28938628 intron CG14521 - chr3R_5_28935001 chr3R_28935001 RAL-223 3272 chr3R 28947945 28947983 chr3R 28948107 28948128 19 161 13.0 11.0 12.0 1.5 183 chr3R 28947945 intron CG14521 - chr3R 28948036 intron CG14521 - chr3R 28948128 intron CG14521 - chr3R_19_28945001 chr3R_28945001 RAL-223 3273 chr3R 28957915 28957945 chr3R 28958021 28958055 4 118 7.5 6.0 6.8 0.5 140 chr3R 28957915 intron CG14521 - chr3R 28957985 intron CG14521 - chr3R 28958055 intron CG14521 - chr3R_4_28955001 chr3R_28955001 RAL-223 3274 chr3R 28957946 28957970 chr3R 28958020 28958047 5 98 7.0 6.0 6.5 0.7 101 chr3R 28957946 intron CG14521 - chr3R 28957996 intron CG14521 - chr3R 28958047 intron CG14521 - chr3R_5_28955001 chr3R_28955001 RAL-223 3275 chr3R 28968372 28968442 chr3R 28968499 28968569 22 126 6.0 7.5 6.8 2.8 197 chr3R 28968372 intron CG14521 - chr3R 28968470 intron CG14521 - chr3R 28968569 intron CG14521 - chr3R_22_28965001 chr3R_28965001 RAL-223 3276 chr3R 29006852 29006872 chr3R 29006978 29006999 4 127 10.5 14.5 12.5 0.3 147 chr3R 29006852 intron wat - chr3R 29006926 intron wat - chr3R 29006999 intron wat - chr3R_4_29005001 chr3R_29005001 RAL-223 3277 chr3R 29034423 29034491 chr3R 29034556 29034624 33 133 6.5 10.5 8.5 3.5 201 chr3R 29034423 intergenic Cpsf100 +,CR45044 +,beta4GalNAcTB - chr3R 29034524 intergenic Cpsf100 +,CR45044 + chr3R 29034624 5` UTR Cpsf100 + chr3R_33_29030001 chr3R_29030001 RAL-223 3278 chr3R 29070006 29070078 chr3R 29070137 29070209 37 131 4.5 6.0 5.2 6.0 203 chr3R 29070006 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070209 intron CG11873 + chr3R_37_29070001 chr3R_29070001 RAL-223 3279 chr3R 29077766 29077840 chr3R 29077897 29077971 20 130 3.5 3.5 3.5 4.4 205 chr3R 29077766 intron CG11873 + chr3R 29077868 intron CG11873 + chr3R 29077971 intron CG11873 + chr3R_20_29075001 chr3R_29075001 RAL-223 3280 chr3R 29079352 29079407 chr3R 29080774 29080837 NOF 14 1426 10.0 0.0 5.0 2.3 1485 chr3R 29079352 intron CG11873 + chr3R 29080094 intron CG11873 + chr3R 29080837 intron CG11873 + chr3R_14_29080001 chr3R_29080001 RAL-223 3281 chr3R 29090706 29090782 chr3R 29090873 29090939 30 165 8.0 4.0 6.0 4.3 233 chr3R 29090706 intron CG11873 + chr3R 29090822 intron CG11873 + chr3R 29090939 intron CG11873 + chr3R_30_29090001 chr3R_29090001 RAL-223 3282 chr3R 29091380 29091425 chr3R 29091518 29091562 14 135 11.0 10.5 10.8 1.2 182 chr3R 29091380 intron CG11873 + chr3R 29091471 intron CG11873 + chr3R 29091562 intron CG11873 + chr3R_14_29090001 chr3R_29090001 RAL-223 3283 chr3R 29128426 29128485 chr3R 29128580 29128639 26 154 11.5 4.5 8.0 2.9 213 chr3R 29128426 intergenic dgt6 -,CG11880 + chr3R 29128532 intergenic dgt6 -,CG11880 + chr3R 29128639 3` UTR dgt6 - chr3R_26_29125001 chr3R_29125001 RAL-223 3284 chr3R 29237229 29237274 chr3R 29239300 29239339 6 2069 39.5 15.0 27.2 0.2 2110 chr3R 29237229 exon CG11951 - chr3R 29238284 intron CG11951 - chr3R 29239339 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-223 3285 chr3R 29237522 29237533 chr3R 29239465 29239476 7 1943 48.0 10.5 29.2 0.2 1954 chr3R 29237522 exon CG11951 - chr3R 29238499 intron CG11951 - chr3R 29239476 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-223 3286 chr3R 29239197 29239206 chr3R 29245538 29245546 4 6341 0.0 32.5 16.2 0.2 6349 chr3R 29239197 exon CG31427 - chr3R 29242372 exon CG31445 - chr3R 29245546 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-223 3287 chr3R 29239211 29239247 chr3R 29245527 29245581 7 6336 7.5 29.5 18.5 0.4 6370 chr3R 29239211 exon CG31427 - chr3R 29242396 exon CG31445 - chr3R 29245581 exon SP1029 - chr3R_7_29240001 chr3R_29240001 RAL-223 3288 chr3R 29240428 29240502 chr3R 29240559 29240636 26 132 3.0 4.0 3.5 5.8 208 chr3R 29240428 intergenic CG31427 -,CG31445 - chr3R 29240532 intergenic CG31445 -,CG31427 - chr3R 29240636 3` UTR CG31445 - chr3R_26_29240001 chr3R_29240001 RAL-223 3289 chr3R 29319776 29319848 chr3R 29320145 29320217 jockey 14 369 7.5 12.0 9.8 1.3 441 chr3R 29319776 intergenic Cnx99A - chr3R 29319996 intergenic Cnx99A - chr3R 29320217 intergenic not near genes chr3R_14_29315001 chr3R_29315001 RAL-223 3290 chr3R 29351732 29351750 chr3R 29351867 29351874 12 134 5.5 14.0 9.8 1.1 142 chr3R 29351732 intergenic not near genes chr3R 29351803 intergenic not near genes chr3R 29351874 intergenic not near genes chr3R_12_29350001 chr3R_29350001 RAL-223 3291 chr3R 29372673 29372723 chr3R 29372799 29372849 25 126 8.0 6.0 7.0 3.1 176 chr3R 29372673 intergenic not near genes chr3R 29372761 intergenic not near genes chr3R 29372849 intergenic not near genes chr3R_25_29370001 chr3R_29370001 RAL-223 3292 chr3R 29376312 29376475 chr3R 29376449 29376608 26 136 0.0 0.0 0.0 26.0 296 chr3R 29376312 intergenic not near genes chr3R 29376460 intergenic not near genes chr3R 29376608 intergenic not near genes chr3R_26_29375001 chr3R_29375001 RAL-223 3293 chr3R 29384133 29384183 chr3R 29384260 29384310 23 127 15.0 8.5 11.8 1.8 177 chr3R 29384133 intron Ptp99A + chr3R 29384222 intron Ptp99A + chr3R 29384310 intron Ptp99A + chr3R_23_29380001 chr3R_29380001 RAL-223 3294 chr3R 29406566 29406630 chr3R 29407902 29407962 jockey 17 1336 9.0 9.5 9.2 1.7 1396 chr3R 29406566 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407962 intron Ptp99A + chr3R_17_29405001 chr3R_29405001 RAL-223 3295 chr3R 29429736 29429805 chr3R 29429864 29429933 28 127 2.5 5.5 4.0 5.6 197 chr3R 29429736 intron Ptp99A + chr3R 29429834 intron Ptp99A + chr3R 29429933 intron Ptp99A + chr3R_28_29425001 chr3R_29425001 RAL-223 3296 chr3R 29449315 29449384 chr3R 29449443 29449512 33 128 12.5 12.0 12.2 2.5 197 chr3R 29449315 intron Ptp99A + chr3R 29449414 intron Ptp99A + chr3R 29449512 intron Ptp99A + chr3R_33_29445001 chr3R_29445001 RAL-223 3297 chr3R 29471957 29472029 chr3R 29472100 29472169 18 143 12.0 8.5 10.2 1.6 212 chr3R 29471957 intron Ptp99A + chr3R 29472063 intron Ptp99A + chr3R 29472169 intron Ptp99A + chr3R_18_29470001 chr3R_29470001 RAL-223 3298 chr3R 29474379 29474425 chr3R 29474516 29474562 16 137 12.0 4.5 8.2 1.7 183 chr3R 29474379 intron Ptp99A + chr3R 29474470 intron Ptp99A + chr3R 29474562 intron Ptp99A + chr3R_16_29470001 chr3R_29470001 RAL-223 3299 chr3R 29494162 29494211 chr3R 29494300 29494349 15 137 6.5 6.5 6.5 2.0 187 chr3R 29494162 exon Diedel + chr3R 29494256 3` UTR Diedel + chr3R 29494349 intergenic Diedel +,CG2010 + chr3R_15_29490001 chr3R_29490001 RAL-223 3300 chr3R 29498614 29498643 chr3R 29498730 29498769 17 116 13.5 8.0 10.8 1.4 155 chr3R 29498614 exon CG2010 + chr3R 29498692 exon CG2010 + chr3R 29498769 3` UTR CG2010 + chr3R_17_29495001 chr3R_29495001 RAL-223 3301 chr3R 29498645 29498658 chr3R 29498724 29498772 7 114 8.5 7.5 8.0 0.8 127 chr3R 29498645 exon CG2010 + chr3R 29498708 3` UTR CG2010 + chr3R 29498772 3` UTR CG2010 + chr3R_7_29495001 chr3R_29495001 RAL-223 3302 chr3R 29498671 29498681 chr3R 29498769 29498806 8 120 5.5 16.0 10.8 0.7 135 chr3R 29498671 exon CG2010 + chr3R 29498738 3` UTR CG2010 + chr3R 29498806 3` UTR CG2010 + chr3R_8_29495001 chr3R_29495001 RAL-223 3303 chr3R 29508796 29508842 chr3R 29508975 29509014 6 173 0.0 0.0 0.0 6.0 218 chr3R 29508796 intergenic not near genes chr3R 29508905 intergenic not near genes chr3R 29509014 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-223 3304 chr3R 29539391 29539411 chr3R 29539516 29539535 13 126 15.5 0.0 7.8 1.5 144 chr3R 29539391 intergenic not near genes chr3R 29539463 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_13_29535001 chr3R_29535001 RAL-223 3305 chr3R 29546709 29546784 chr3R 29546830 29546910 23 124 10.0 7.5 8.8 2.3 201 chr3R 29546709 intergenic not near genes chr3R 29546810 intergenic not near genes chr3R 29546910 intergenic not near genes chr3R_23_29545001 chr3R_29545001 RAL-223 3306 chr3R 29550210 29550285 chr3R 29550341 29550416 5 131 7.0 9.0 8.0 0.6 206 chr3R 29550210 intergenic not near genes chr3R 29550313 intergenic not near genes chr3R 29550416 intergenic not near genes chr3R_5_29550001 chr3R_29550001 RAL-223 3307 chr3R 29563978 29563996 chr3R 29564104 29564122 12 126 1.5 14.5 8.0 1.3 144 chr3R 29563978 intron Dr + chr3R 29564050 intron Dr + chr3R 29564122 intron Dr + chr3R_12_29560001 chr3R_29560001 RAL-223 3308 chr3R 29648962 29649013 chr3R 29649102 29649153 16 140 2.0 6.0 4.0 3.2 191 chr3R 29648962 intron Dop1R2 - chr3R 29649058 intron Dop1R2 - chr3R 29649153 intron Dop1R2 - chr3R_16_29645001 chr3R_29645001 RAL-223 3309 chr3R 29655602 29655674 chr3R 29655731 29655797 20 129 3.5 8.5 6.0 2.9 195 chr3R 29655602 intron Dop1R2 - chr3R 29655700 intron Dop1R2 - chr3R 29655797 intron Dop1R2 - chr3R_20_29655001 chr3R_29655001 RAL-223 3310 chr3R 29702100 29702157 chr3R 29702231 29702290 13 132 4.0 0.0 2.0 4.3 190 chr3R 29702100 intergenic not near genes chr3R 29702195 intergenic not near genes chr3R 29702290 intergenic not near genes chr3R_13_29700001 chr3R_29700001 RAL-223 3311 chr3R 29738223 29738293 chr3R 29739740 29739810 hobo 22 1516 8.0 10.0 9.0 2.2 1587 chr3R 29738223 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739810 5` UTR CG1969 + chr3R_22_29735001 chr3R_29735001 RAL-223 3312 chr3R 29754915 29754990 chr3R 29755043 29755117 26 128 2.5 6.0 4.2 5.0 202 chr3R 29754915 intergenic CR44953 -,yata + chr3R 29755016 intergenic CR44953 -,yata + chr3R 29755117 intergenic CR44953 - chr3R_26_29755001 chr3R_29755001 RAL-223 3313 chr3R 29760322 29760381 chr3R 29761573 29761632 pogo 20 1250 8.5 0.0 4.2 3.8 1310 chr3R 29760322 intergenic not near genes chr3R 29760977 intergenic not near genes chr3R 29761632 intergenic not near genes chr3R_20_29760001 chr3R_29760001 RAL-223 3314 chr3R 29880958 29881030 chr3R 29881094 29881166 20 136 4.0 5.0 4.5 3.6 208 chr3R 29880958 intron CG31038 + chr3R 29881062 intron CG31038 + chr3R 29881166 intron CG31038 + chr3R_20_29880001 chr3R_29880001 RAL-223 3315 chr3R 29881972 29882019 chr3R 29891179 29891226 roo 16 9206 16.0 9.5 12.8 1.2 9254 chr3R 29881972 intron CG31038 + chr3R 29886599 intron CG31038 + chr3R 29891226 intron CG31038 + chr3R_16_29885001 chr3R_29885001 RAL-223 3316 chr3R 29882022 29882044 chr3R 29891178 29891251 roo 14 9203 10.0 9.0 9.5 1.3 9229 chr3R 29882022 intron CG31038 + chr3R 29886636 intron CG31038 + chr3R 29891251 intron CG31038 + chr3R_14_29885001 chr3R_29885001 RAL-223 3317 chr3R 29950537 29950592 chr3R 29950653 29950719 30 122 5.0 11.0 8.0 3.3 182 chr3R 29950537 intergenic TkR99D - chr3R 29950628 intergenic TkR99D - chr3R 29950719 intergenic TkR99D - chr3R_30_29950001 chr3R_29950001 RAL-223 3318 chr3R 29963431 29963493 chr3R 29963579 29963635 21 149 3.5 0.0 1.8 7.5 204 chr3R 29963431 intron TkR99D - chr3R 29963533 intron TkR99D - chr3R 29963635 intron TkR99D - chr3R_21_29960001 chr3R_29960001 RAL-223 3319 chr3R 29966012 29966074 chr3R 29966140 29966169 13 125 8.5 12.5 10.5 1.1 157 chr3R 29966012 intron TkR99D - chr3R 29966090 intron TkR99D - chr3R 29966169 intron TkR99D - chr3R_13_29965001 chr3R_29965001 RAL-223 3320 chr3R 29976515 29976532 chr3R 29976777 29976794 5 262 15.0 16.5 15.8 0.3 279 chr3R 29976515 intergenic not near genes chr3R 29976654 intergenic not near genes chr3R 29976794 intergenic not near genes chr3R_5_29975001 chr3R_29975001 RAL-223 3321 chr3R 29976534 29976552 chr3R 29976772 29976814 11 254 9.0 14.5 11.8 0.9 280 chr3R 29976534 intergenic not near genes chr3R 29976674 intergenic not near genes chr3R 29976814 intergenic not near genes chr3R_11_29975001 chr3R_29975001 RAL-223 3322 chr3R 30032111 30032130 chr3R 30032240 30032259 7 129 15.5 13.5 14.5 0.5 148 chr3R 30032111 exon Axn + chr3R 30032185 intron Axn + chr3R 30032259 intron Axn + chr3R_7_30030001 chr3R_30030001 RAL-223 3323 chr3R 30065280 30065300 chr3R 30065443 30065463 5 163 18.0 4.0 11.0 0.4 183 chr3R 30065280 intron sima + chr3R 30065372 intron sima + chr3R 30065463 intron sima + chr3R_5_30065001 chr3R_30065001 RAL-223 3324 chr3R 30075525 30075583 chr3R 30075664 30075722 11 139 7.0 11.0 9.0 1.1 197 chr3R 30075525 intron sima + chr3R 30075624 intron sima + chr3R 30075722 intron sima + chr3R_11_30075001 chr3R_30075001 RAL-223 3325 chr3R 30080417 30080476 chr3R 30080546 30080605 9 129 3.5 5.5 4.5 1.6 188 chr3R 30080417 intron sima + chr3R 30080511 intron sima + chr3R 30080605 intron sima + chr3R_9_30080001 chr3R_30080001 RAL-223 3326 chr3R 30084806 30084839 chr3R 30086325 30086356 hobo 9 1519 4.5 12.5 8.5 0.9 1550 chr3R 30084806 intron sima + chr3R 30085581 intron sima + chr3R 30086356 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-223 3327 chr3R 30084850 30084861 chr3R 30086359 30086378 hobo 5 1515 0.0 17.5 8.8 0.5 1528 chr3R 30084850 intron sima + chr3R 30085614 intron sima + chr3R 30086378 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-223 3328 chr3R 30084864 30084878 chr3R 30086334 30086374 hobo 9 1508 0.0 14.5 7.2 1.1 1510 chr3R 30084864 intron sima + chr3R 30085619 intron sima + chr3R 30086374 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-223 3329 chr3R 30106323 30106414 chr3R 30106495 30106552 20 162 0.0 10.0 5.0 3.3 229 chr3R 30106323 intron sima + chr3R 30106438 intron sima + chr3R 30106552 intron sima + chr3R_20_30105001 chr3R_30105001 RAL-223 3330 chr3R 30163753 30163823 chr3R 30164042 30164108 23 296 8.5 4.5 6.5 3.1 355 chr3R 30163753 intergenic not near genes chr3R 30163930 intergenic not near genes chr3R 30164108 intergenic not near genes chr3R_23_30160001 chr3R_30160001 RAL-223 3331 chr3R 30183166 30183232 chr3R 30183325 30183391 28 159 13.5 5.0 9.2 2.7 225 chr3R 30183166 intergenic not near genes chr3R 30183278 intergenic not near genes chr3R 30183391 intergenic CR44262 - chr3R_28_30180001 chr3R_30180001 RAL-223 3332 chr3R 30224599 30224673 chr3R 30224727 30224801 33 128 6.0 6.5 6.2 4.6 202 chr3R 30224599 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224801 intergenic not near genes chr3R_33_30220001 chr3R_30220001 RAL-223 3333 chr3R 30225698 30225713 chr3R 30225824 30225839 10 126 4.5 4.5 4.5 1.8 141 chr3R 30225698 intergenic not near genes chr3R 30225768 intergenic not near genes chr3R 30225839 intergenic not near genes chr3R_10_30225001 chr3R_30225001 RAL-223 3334 chr3R 30238730 30238789 chr3R 30239943 30240003 1360 24 1213 10.5 8.0 9.2 2.4 1273 chr3R 30238730 intergenic not near genes chr3R 30239366 intergenic not near genes chr3R 30240003 intergenic not near genes chr3R_24_30235001 chr3R_30235001 RAL-223 3335 chr3R 30262561 30262608 chr3R 30262708 30262755 17 147 0.0 9.5 4.8 2.9 194 chr3R 30262561 intergenic not near genes chr3R 30262658 intergenic not near genes chr3R 30262755 intergenic not near genes chr3R_17_30260001 chr3R_30260001 RAL-223 3336 chr3R 30264428 30264505 chr3R 30264664 30264736 16 235 7.5 3.0 5.2 2.6 308 chr3R 30264428 intergenic not near genes chr3R 30264582 intergenic not near genes chr3R 30264736 intergenic not near genes chr3R_16_30260001 chr3R_30260001 RAL-223 3337 chr3R 30310848 30310923 chr3R 30310981 30311056 25 133 5.0 10.5 7.8 2.8 208 chr3R 30310848 intron hdc + chr3R 30310952 intron hdc + chr3R 30311056 intron hdc + chr3R_25_30310001 chr3R_30310001 RAL-223 3338 chr3R 30317327 30317359 chr3R 30324969 30325001 roo 14 7641 0.0 0.5 0.2 11.7 7674 chr3R 30317327 intron hdc + chr3R 30321164 intron hdc + chr3R 30325001 intron hdc + chr3R_14_30320001 chr3R_30320001 RAL-223 3339 chr3R 30330445 30330519 chr3R 30330576 30330649 25 129 8.5 10.0 9.2 2.5 204 chr3R 30330445 intron hdc + chr3R 30330547 intron hdc + chr3R 30330649 intron hdc + chr3R_25_30330001 chr3R_30330001 RAL-223 3340 chr3R 30334062 30334133 chr3R 30334195 30334266 25 132 8.5 5.5 7.0 3.1 204 chr3R 30334062 intron hdc + chr3R 30334164 intron hdc + chr3R 30334266 intron hdc + chr3R_25_30330001 chr3R_30330001 RAL-223 3341 chr3R 30375499 30375569 chr3R 30383172 30383232 412 14 7672 7.0 11.0 9.0 1.4 7733 chr3R 30375499 intergenic not near genes chr3R 30379366 intergenic not near genes chr3R 30383232 intergenic not near genes chr3R_14_30375001 chr3R_30375001 RAL-223 3342 chr3R 30396177 30396237 chr3R 30404493 30404549 roo 33 8316 9.5 14.5 12.0 2.5 8372 chr3R 30396177 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404549 5` UTR CR45570 + chr3R_33_30400001 chr3R_30400001 RAL-223 3343 chr3R 30413014 30413088 chr3R 30413141 30413215 16 126 6.5 4.5 5.5 2.5 201 chr3R 30413014 intergenic not near genes chr3R 30413114 intergenic not near genes chr3R 30413215 intergenic not near genes chr3R_16_30410001 chr3R_30410001 RAL-223 3344 chr3R 30445466 30445530 chr3R 30445608 30445672 33 142 11.0 7.0 9.0 3.3 206 chr3R 30445466 intergenic aralar1 -,Osi23 - chr3R 30445569 intergenic aralar1 - chr3R 30445672 3` UTR aralar1 - chr3R_33_30445001 chr3R_30445001 RAL-223 3345 chr3R 30448061 30448138 chr3R 30448189 30448266 20 128 6.0 0.0 3.0 5.0 205 chr3R 30448061 intron aralar1 - chr3R 30448164 intron aralar1 - chr3R 30448266 intron aralar1 - chr3R_20_30445001 chr3R_30445001 RAL-223 3346 chr3R 30456349 30456415 chr3R 30456479 30456545 27 130 9.5 6.5 8.0 3.0 196 chr3R 30456349 intergenic CG2224 -,aralar1 - chr3R 30456447 3` UTR CG2224 - chr3R 30456545 3` UTR CG2224 - chr3R_27_30455001 chr3R_30455001 RAL-223 3347 chr3R 30457972 30458038 chr3R 30458102 30458168 26 130 0.5 10.0 5.2 4.2 196 chr3R 30457972 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458168 intron CG2224 - chr3R_26_30455001 chr3R_30455001 RAL-223 3348 chr3R 30473634 30473683 chr3R 30473800 30473838 16 164 9.0 8.5 8.8 1.6 204 chr3R 30473634 intron PH4alphaEFB + chr3R 30473736 intron PH4alphaEFB + chr3R 30473838 intron PH4alphaEFB + chr3R_16_30470001 chr3R_30470001 RAL-223 3349 chr3R 30480425 30480503 chr3R 30482943 30483021 jockey 25 2515 9.5 0.0 4.8 4.3 2596 chr3R 30480425 intron PH4alphaEFB + chr3R 30481723 intron PH4alphaEFB + chr3R 30483021 intron PH4alphaEFB + chr3R_25_30480001 chr3R_30480001 RAL-223 3350 chr3R 30483400 30483472 chr3R 30483530 30483602 31 129 10.5 10.5 10.5 2.7 202 chr3R 30483400 intron PH4alphaEFB + chr3R 30483501 intron PH4alphaEFB + chr3R 30483602 intron PH4alphaEFB + chr3R_31_30480001 chr3R_30480001 RAL-223 3351 chr3R 30488073 30488099 chr3R 30488202 30488221 10 128 9.5 0.0 4.8 1.7 148 chr3R 30488073 intergenic Jon99Fii - chr3R 30488147 intergenic Jon99Fii - chr3R 30488221 intergenic Jon99Fii - chr3R_10_30485001 chr3R_30485001 RAL-223 3352 chr3R 30498344 30498429 chr3R 30498606 30498679 23 254 0.0 9.5 4.8 4.0 335 chr3R 30498344 intron PH4alphaNE1 - chr3R 30498512 intron PH4alphaNE1 - chr3R 30498679 intron PH4alphaNE1 - chr3R_23_30495001 chr3R_30495001 RAL-223 3353 chr3R 30536441 30536514 chr3R 30536572 30536655 18 128 4.5 0.0 2.2 5.6 214 chr3R 30536441 intron tmod + chr3R 30536548 intron tmod + chr3R 30536655 intron tmod + chr3R_18_30535001 chr3R_30535001 RAL-223 3354 chr3R 30539782 30539834 chr3R 30539909 30539961 21 127 8.0 11.5 9.8 1.9 179 chr3R 30539782 intron tmod + chr3R 30539872 intron tmod + chr3R 30539961 intron tmod + chr3R_21_30535001 chr3R_30535001 RAL-223 3355 chr3R 30552196 30552275 chr3R 30552323 30552402 25 127 7.0 9.5 8.2 2.7 206 chr3R 30552196 intron tmod + chr3R 30552299 intron tmod + chr3R 30552402 intron tmod + chr3R_25_30550001 chr3R_30550001 RAL-223 3356 chr3R 30564282 30564351 chr3R 30564415 30564474 24 128 1.0 11.0 6.0 3.4 192 chr3R 30564282 intron tmod + chr3R 30564378 intron tmod + chr3R 30564474 intron tmod + chr3R_24_30560001 chr3R_30560001 RAL-223 3357 chr3R 30627565 30627628 chr3R 30627695 30627758 27 128 7.5 7.5 7.5 3.2 193 chr3R 30627565 3` UTR CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627758 exon CG2267 - chr3R_27_30625001 chr3R_30625001 RAL-223 3358 chr3R 30649817 30649874 chr3R 30649948 30650005 19 130 9.0 8.5 8.8 1.9 188 chr3R 30649817 3` UTR CG34432 + chr3R 30649911 intergenic CG34432 +,CG34433 + chr3R 30650005 exon CG34433 + chr3R_19_30645001 chr3R_30645001 RAL-223 3359 chr3R 30650772 30650811 chr3R 30650919 30650958 14 147 0.0 10.5 5.2 2.3 186 chr3R 30650772 3` UTR CG34433 + chr3R 30650865 intergenic CG34433 + chr3R 30650958 intergenic CG34433 + chr3R_14_30650001 chr3R_30650001 RAL-223 3360 chr3R 30679473 30679546 chr3R 30686992 30687065 blood 26 7519 7.0 7.5 7.2 3.2 7592 chr3R 30679473 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687065 intergenic not near genes chr3R_26_30680001 chr3R_30680001 RAL-223 3361 chr3R 30761301 30761333 chr3R 30761433 30761465 15 132 10.5 11.5 11.0 1.2 164 chr3R 30761301 intergenic not near genes chr3R 30761383 intergenic not near genes chr3R 30761465 intergenic not near genes chr3R_15_30760001 chr3R_30760001 RAL-223 3362 chr3R 30800352 30800428 chr3R 30800488 30800524 33 134 9.5 13.0 11.2 2.7 172 chr3R 30800352 5` UTR wts - chr3R 30800438 5` UTR wts - chr3R 30800524 5` UTR wts - chr3R_33_30800001 chr3R_30800001 RAL-223 3363 chr3R 30818775 30818838 chr3R 30820390 30820445 1360 28 1613 11.0 14.5 12.8 2.0 1670 chr3R 30818775 intron cindr + chr3R 30819610 intron cindr + chr3R 30820445 intron cindr + chr3R_28_30815001 chr3R_30815001 RAL-223 3364 chr3R 30821362 30821419 chr3R 30821500 30821549 7 136 5.0 5.5 5.2 1.1 187 chr3R 30821362 intron cindr + chr3R 30821456 intron cindr + chr3R 30821549 intron cindr + chr3R_7_30820001 chr3R_30820001 RAL-223 3365 chr3R 30823382 30823416 chr3R 30823528 30823562 9 146 5.0 10.0 7.5 1.1 180 chr3R 30823382 intron cindr + chr3R 30823472 intron cindr + chr3R 30823562 intron cindr + chr3R_9_30820001 chr3R_30820001 RAL-223 3366 chr3R 30850192 30850267 chr3R 30850334 30850409 27 142 4.0 6.5 5.2 4.4 217 chr3R 30850192 intergenic not near genes chr3R 30850300 intergenic not near genes chr3R 30850409 intergenic not near genes chr3R_27_30850001 chr3R_30850001 RAL-223 3367 chr3R 30888930 30888999 chr3R 30893412 30893476 33 4477 55.0 60.5 57.8 0.6 4546 chr3R 30888930 exon Sap-r - chr3R 30891203 intergenic not near genes chr3R 30893476 intergenic not near genes chr3R_33_30890001 chr3R_30890001 RAL-223 3368 chr3R 30900479 30900550 chr3R 30900609 30900680 20 130 8.0 11.0 9.5 1.9 201 chr3R 30900479 exon Cyp4c3 + chr3R 30900580 3` UTR Cyp4c3 + chr3R 30900680 3` UTR Cyp4c3 + chr3R_20_30900001 chr3R_30900001 RAL-223 3369 chr3R 30927779 30927788 chr3R 30927912 30927920 6 133 14.5 7.5 11.0 0.5 141 chr3R 30927779 intron Ptx1 + chr3R 30927850 intron Ptx1 + chr3R 30927920 intron Ptx1 + chr3R_6_30925001 chr3R_30925001 RAL-223 3370 chr3R 30980801 30980814 chr3R 30980926 30980940 4 126 7.0 8.5 7.8 0.5 139 chr3R 30980801 intron 5-HT7 - chr3R 30980870 intron 5-HT7 - chr3R 30980940 intron 5-HT7 - chr3R_4_30980001 chr3R_30980001 RAL-223 3371 chr3R 30982553 30982578 chr3R 30982694 30982720 9 141 12.0 3.5 7.8 1.0 167 chr3R 30982553 intron 5-HT7 - chr3R 30982636 intron 5-HT7 - chr3R 30982720 intron 5-HT7 - chr3R_9_30980001 chr3R_30980001 RAL-223 3372 chr3R 30982582 30982619 chr3R 30982693 30982745 10 136 7.0 3.5 5.2 1.6 163 chr3R 30982582 intron 5-HT7 - chr3R 30982664 intron 5-HT7 - chr3R 30982745 intron 5-HT7 - chr3R_10_30980001 chr3R_30980001 RAL-223 3373 chr3R 31042062 31042136 chr3R 31042199 31042273 30 137 11.0 10.5 10.8 2.5 211 chr3R 31042062 exon CanA1 + chr3R 31042168 intron CanA1 + chr3R 31042273 intron CanA1 + chr3R_30_31040001 chr3R_31040001 RAL-223 3374 chr3R 31055469 31055516 chr3R 31055621 31055671 7 153 5.5 14.5 10.0 0.6 202 chr3R 31055469 3` UTR dco - chr3R 31055570 3` UTR dco - chr3R 31055671 3` UTR dco - chr3R_7_31055001 chr3R_31055001 RAL-223 3375 chr3R 31062611 31062655 chr3R 31062740 31062786 15 130 13.5 7.0 10.2 1.3 175 chr3R 31062611 intergenic not near genes chr3R 31062698 intergenic not near genes chr3R 31062786 intergenic not near genes chr3R_15_31060001 chr3R_31060001 RAL-223 3376 chr3R 31062656 31062680 chr3R 31062736 31062811 11 126 10.5 6.0 8.2 1.2 155 chr3R 31062656 intergenic not near genes chr3R 31062734 intergenic not near genes chr3R 31062811 intergenic not near genes chr3R_11_31060001 chr3R_31060001 RAL-223 3377 chr3R 31074183 31074261 chr3R 31081831 31081916 springer 23 7653 6.5 2.5 4.5 4.2 7733 chr3R 31074183 intron Sox100B + chr3R 31078050 intron Sox100B + chr3R 31081916 exon Sox100B + chr3R_23_31075001 chr3R_31075001 RAL-223 3378 chr3R 31109629 31109638 chr3R 31109755 31109759 6 125 12.5 2.5 7.5 0.7 130 chr3R 31109629 intergenic CG11318 - chr3R 31109694 intergenic not near genes chr3R 31109759 intergenic not near genes chr3R_6_31105001 chr3R_31105001 RAL-223 3379 chr3R 31144715 31144727 chr3R 31144850 31144867 7 139 22.5 9.5 16.0 0.4 152 chr3R 31144715 intron Gycbeta100B + chr3R 31144791 intron Gycbeta100B + chr3R 31144867 intron Gycbeta100B + chr3R_7_31140001 chr3R_31140001 RAL-223 3380 chr3R 31150218 31150292 chr3R 31150348 31150412 26 128 8.5 8.5 8.5 2.7 194 chr3R 31150218 intron Gycbeta100B + chr3R 31150315 intron Gycbeta100B + chr3R 31150412 exon Gycbeta100B + chr3R_26_31150001 chr3R_31150001 RAL-223 3381 chr3R 31156294 31156311 chr3R 31156474 31156491 10 180 18.5 14.5 16.5 0.6 197 chr3R 31156294 intron Gycbeta100B + chr3R 31156392 intron Gycbeta100B + chr3R 31156491 intron Gycbeta100B + chr3R_10_31155001 chr3R_31155001 RAL-223 3382 chr3R 31173272 31173342 chr3R 31173409 31173469 31 135 7.0 11.5 9.2 3.0 197 chr3R 31173272 intron Gycbeta100B + chr3R 31173370 intron Gycbeta100B + chr3R 31173469 intron Gycbeta100B + chr3R_31_31170001 chr3R_31170001 RAL-223 3383 chr3R 31215890 31215950 chr3R 31216027 31216087 23 137 10.0 12.0 11.0 1.9 197 chr3R 31215890 5` UTR CG15561 - chr3R 31215988 intergenic CG15561 -,CG1746 - chr3R 31216087 intergenic CG1746 -,CG15561 - chr3R_23_31215001 chr3R_31215001 RAL-223 3384 chr3R 31242268 31242279 chr3R 31242448 31242459 4 180 17.0 9.0 13.0 0.3 191 chr3R 31242268 exon qless - chr3R 31242364 intron qless - chr3R 31242459 intron qless - chr3R_4_31240001 chr3R_31240001 RAL-223 3385 chr3R 31242287 31242344 chr3R 31242447 31242524 24 179 8.0 8.5 8.2 2.6 237 chr3R 31242287 exon qless - chr3R 31242406 intron qless - chr3R 31242524 intron qless - chr3R_24_31240001 chr3R_31240001 RAL-223 3386 chr3R 31279333 31279397 chr3R 31285574 31285637 diver 35 6240 10.5 11.0 10.8 3.0 6304 chr3R 31279333 intergenic not near genes chr3R 31282485 intergenic not near genes chr3R 31285637 intergenic not near genes chr3R_35_31280001 chr3R_31280001 RAL-223 3387 chr3R 31413046 31413072 chr3R 31418296 31418315 copia 11 5249 13.5 6.0 9.8 1.0 5269 chr3R 31413046 intron Gprk2 + chr3R 31415680 intron Gprk2 + chr3R 31418315 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-223 3388 chr3R 31413083 31413123 chr3R 31418292 31418373 copia 16 5247 7.0 5.5 6.2 2.2 5290 chr3R 31413083 intron Gprk2 + chr3R 31415728 intron Gprk2 + chr3R 31418373 intron Gprk2 + chr3R_16_31415001 chr3R_31415001 RAL-223 3389 chr3R 31422494 31422558 chr3R 31422635 31422699 29 141 6.5 7.5 7.0 3.6 205 chr3R 31422494 intron Gprk2 + chr3R 31422596 intron Gprk2 + chr3R 31422699 intron Gprk2 + chr3R_29_31420001 chr3R_31420001 RAL-223 3390 chr3R 31426840 31426903 chr3R 31426982 31427045 27 142 10.0 11.0 10.5 2.3 205 chr3R 31426840 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427045 intron Gprk2 + chr3R_27_31425001 chr3R_31425001 RAL-223 3391 chr3R 31435314 31435388 chr3R 31435516 31435590 32 202 6.0 10.0 8.0 3.6 276 chr3R 31435314 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435590 intron Gprk2 + chr3R_32_31435001 chr3R_31435001 RAL-223 3392 chr3R 31442222 31442290 chr3R 31442357 31442425 27 133 9.0 6.5 7.8 3.1 203 chr3R 31442222 intron Gprk2 + chr3R 31442324 intron Gprk2 + chr3R 31442425 intron Gprk2 + chr3R_27_31440001 chr3R_31440001 RAL-223 3393 chr3R 31446036 31446102 chr3R 31446176 31446245 25 139 11.5 7.0 9.2 2.5 209 chr3R 31446036 intron Gprk2 + chr3R 31446140 intron Gprk2 + chr3R 31446245 intron Gprk2 + chr3R_25_31445001 chr3R_31445001 RAL-223 3394 chr3R 31448557 31448627 chr3R 31448683 31448753 27 119 11.5 11.0 11.2 2.2 196 chr3R 31448557 intron Gprk2 + chr3R 31448655 intron Gprk2 + chr3R 31448753 intron Gprk2 + chr3R_27_31445001 chr3R_31445001 RAL-223 3395 chr3R 31539291 31539351 chr3R 31539426 31539486 29 135 7.0 12.0 9.5 2.8 195 chr3R 31539291 intergenic not near genes chr3R 31539388 intergenic not near genes chr3R 31539486 intergenic not near genes chr3R_29_31535001 chr3R_31535001 RAL-223 3396 chr3R 31539814 31539882 chr3R 31539949 31540017 25 134 5.5 6.0 5.8 3.7 203 chr3R 31539814 intergenic not near genes chr3R 31539916 intergenic not near genes chr3R 31540017 intergenic not near genes chr3R_25_31535001 chr3R_31535001 RAL-223 3397 chr3R 31548859 31548889 chr3R 31548993 31549024 11 134 14.5 17.5 16.0 0.6 165 chr3R 31548859 intron nyo + chr3R 31548942 intron nyo + chr3R 31549024 intron nyo + chr3R_11_31545001 chr3R_31545001 RAL-223 3398 chr3R 31630010 31630085 chr3R 31630165 31630240 36 154 5.5 6.0 5.8 5.3 230 chr3R 31630010 intron kek6 + chr3R 31630125 intron kek6 + chr3R 31630240 intron kek6 + chr3R_36_31630001 chr3R_31630001 RAL-223 3399 chr3R 31637811 31637856 chr3R 31637949 31637973 14 136 9.5 7.5 8.5 1.5 162 chr3R 31637811 intron kek6 + chr3R 31637892 intron kek6 + chr3R 31637973 intron kek6 + chr3R_14_31635001 chr3R_31635001 RAL-223 3400 chr3R 31691487 31691551 chr3R 31696303 31696367 Doc 29 4816 9.5 11.5 10.5 2.5 4880 chr3R 31691487 intergenic not near genes chr3R 31693927 intergenic not near genes chr3R 31696367 intergenic not near genes chr3R_29_31690001 chr3R_31690001 RAL-223 3401 chr3R 31725964 31726020 chr3R 31726091 31726147 25 127 15.0 10.0 12.5 1.9 183 chr3R 31725964 intron ttk + chr3R 31726056 intron ttk + chr3R 31726147 intron ttk + chr3R_25_31725001 chr3R_31725001 RAL-223 3402 chr3R 31762804 31762874 chr3R 31762931 31763001 44 127 11.5 15.5 13.5 3.0 197 chr3R 31762804 intergenic CG2150 - chr3R 31762902 intergenic CG2150 - chr3R 31763001 intergenic CG2150 - chr3R_44_31760001 chr3R_31760001 RAL-223 3403 chr3R 31765957 31765989 chr3R 31766083 31766108 7 125 13.0 11.5 12.2 0.5 151 chr3R 31765957 intergenic not near genes chr3R 31766032 intergenic not near genes chr3R 31766108 intergenic not near genes chr3R_7_31765001 chr3R_31765001 RAL-223 3404 chr3R 31829602 31829672 chr3R 31829758 31829835 31 159 4.5 9.0 6.8 4.0 233 chr3R 31829602 intron RhoGAP100F + chr3R 31829718 intron RhoGAP100F + chr3R 31829835 intron RhoGAP100F + chr3R_31_31825001 chr3R_31825001 RAL-223 3405 chr3R 31866365 31866385 chr3R 31866504 31866524 7 139 14.5 12.0 13.2 0.5 159 chr3R 31866365 exon heph - chr3R 31866444 intron heph - chr3R 31866524 intron heph - chr3R_7_31865001 chr3R_31865001 RAL-223 3406 chr3R 31866390 31866419 chr3R 31866496 31866558 12 135 6.5 9.0 7.8 1.4 168 chr3R 31866390 exon heph - chr3R 31866474 intron heph - chr3R 31866558 intron heph - chr3R_12_31865001 chr3R_31865001 RAL-223 3407 chr3R 31897798 31897877 chr3R 31897986 31898015 26 188 5.0 16.5 10.8 2.2 217 chr3R 31897798 intron heph - chr3R 31897906 intron heph - chr3R 31898015 intron heph - chr3R_26_31895001 chr3R_31895001 RAL-223 3408 chr3R 31911641 31911706 chr3R 31911769 31911805 34 132 7.0 5.0 6.0 4.9 164 chr3R 31911641 intron heph - chr3R 31911723 intron heph - chr3R 31911805 intron heph - chr3R_34_31910001 chr3R_31910001 RAL-223 3409 chr3R 31930514 31930589 chr3R 31930646 31930706 22 130 6.5 5.5 6.0 3.1 192 chr3R 31930514 intron heph - chr3R 31930610 intron heph - chr3R 31930706 intron heph - chr3R_22_31930001 chr3R_31930001 RAL-223 3410 chr3R 31931143 31931215 chr3R 31931276 31931348 37 132 9.5 10.5 10.0 3.4 205 chr3R 31931143 intron heph - chr3R 31931246 intron heph - chr3R 31931348 intron heph - chr3R_37_31930001 chr3R_31930001 RAL-223 3411 chr3R 31957930 31958012 chr3R 31958061 31958144 13 132 0.0 4.0 2.0 4.3 214 chr3R 31957930 intron heph - chr3R 31958037 intron heph - chr3R 31958144 intron heph - chr3R_13_31955001 chr3R_31955001 RAL-223 3412 chr3R 31997944 31998014 chr3R 32005464 32005534 blood 23 7519 8.5 7.0 7.8 2.6 7590 chr3R 31997944 intron heph - chr3R 32001739 intron heph - chr3R 32005534 intron heph - chr3R_23_32000001 chr3R_32000001 RAL-223 3413 chr3R 32016661 32016737 chr3R 32016790 32016866 21 125 6.0 8.0 7.0 2.6 205 chr3R 32016661 5` UTR CR45557 + chr3R 32016764 5` UTR CR45557 + chr3R 32016866 5` UTR CR45557 + chr3R_21_32015001 chr3R_32015001 RAL-223 3414 chr3R 32034216 32034287 chr3R 32034349 32034420 22 133 7.0 9.0 8.0 2.4 204 chr3R 32034216 intergenic not near genes chr3R 32034318 intergenic not near genes chr3R 32034420 intergenic not near genes chr3R_22_32030001 chr3R_32030001 RAL-223 3415 chr3R 32039589 32039653 chr3R 32039718 32039782 33 128 5.5 2.0 3.8 6.9 193 chr3R 32039589 3` UTR CG2053 + chr3R 32039686 3` UTR CG2053 + chr3R 32039782 intergenic CG2053 + chr3R_33_32035001 chr3R_32035001 RAL-223 3416 chr3R 32061694 32061762 chr3R 32061988 32062056 18 295 49.5 34.5 42.0 0.4 362 chr3R 32061694 intron Map205 - chr3R 32061875 intron Map205 - chr3R 32062056 intron Map205 - chr3R_18_32060001 chr3R_32060001 RAL-223 3417 chr4 76453 76504 chr4 81946 81997 I-element 16 5493 10.0 7.0 8.5 1.7 5544 chr4 76453 intron pan + chr4 79225 intron pan + chr4 81997 intron pan + chr4_16_75001 chr4_75001 RAL-223 3418 chr4 319954 320016 chr4 328180 328242 Stalker2 19 8226 6.5 9.0 7.8 2.2 8288 chr4 319954 3` UTR CG32850 + chr4 324098 intron CG32850 + chr4 328242 3` UTR,3` UTR CG32850 +,PMCA - chr4_19_320001 chr4_320001 RAL-223 3419 chr4 337840 337912 chr4 340933 341005 18 3093 39.5 41.0 40.2 0.4 3165 chr4 337840 intron PMCA - chr4 339422 intron PMCA - chr4 341005 intron PMCA - chr4_18_335001 chr4_335001 RAL-223 3420 chr4 671566 671623 chr4 680199 680255 Tirant 21 8633 9.0 6.5 7.8 2.4 8689 chr4 671566 intron CG11360 + chr4 675910 intron CG11360 + chr4 680255 intron CG11360 + chr4_21_675001 chr4_675001 RAL-223 3421 chr4 706631 706657 chr4 706814 706840 9 183 39.5 47.0 43.2 0.2 209 chr4 706631 intron ey + chr4 706736 intron ey + chr4 706840 intron ey + chr4_9_705001 chr4_705001 RAL-223 3422 chr4 959321 959620 chr4 959808 959849 18 243 18.5 6.0 12.2 1.4 528 chr4 959321 3` UTR CR45201 - chr4 959585 intergenic CR44030 +,CR45201 - chr4 959849 5` UTR CR44030 + chr4_18_955001 chr4_955001 RAL-223 3423 chr4 959628 959648 chr4 959852 959877 8 227 10.0 14.0 12.0 0.6 249 chr4 959628 intergenic CR44030 +,CR45201 - chr4 959752 5` UTR CR44030 + chr4 959877 5` UTR CR44030 + chr4_8_955001 chr4_955001 RAL-223 3424 chr4 972455 972507 chr4 972587 972639 23 132 12.0 8.5 10.2 2.1 184 chr4 972455 intron fuss - chr4 972547 intron fuss - chr4 972639 intron fuss - chr4_23_970001 chr4_970001 RAL-223 3425 chr4 972513 972518 chr4 972581 972650 7 120 10.5 8.5 9.5 0.7 137 chr4 972513 intron fuss - chr4 972582 intron fuss - chr4 972650 intron fuss - chr4_7_970001 chr4_970001 RAL-223 3426 chr4 1112060 1112119 chr4 1112187 1112246 14 127 3.5 7.0 5.2 2.3 186 chr4 1112060 3` UTR sv + chr4 1112153 3` UTR sv + chr4 1112246 3` UTR sv + chr4_14_1110001 chr4_1110001 RAL-223 3427 chr4 1181953 1182018 chr4 1182288 1182363 26 344 11.5 7.5 9.5 2.5 410 chr4 1181953 intergenic pho - chr4 1182158 intergenic not near genes chr4 1182363 intergenic not near genes chr4_26_1180001 chr4_1180001 RAL-223 3428 chrX 295809 295877 chrX 303479 303547 412 24 7670 8.0 8.5 8.2 2.6 7738 chrX 295809 intron CG3777 + chrX 299678 intron CG3777 + chrX 303547 intron CG3777 + chrX_24_295001 chrX_295001 RAL-223 3429 chrX 318431 318491 chrX 323567 323612 flea 21 5135 10.5 11.0 10.8 1.8 5181 chrX 318431 intron,intron CG3777 +,CG32816 - chrX 321022 intron,intron CG3777 +,CG32816 - chrX 323612 intron,intron CG3777 +,CG32816 - chrX_21_320001 chrX_320001 RAL-223 3430 chrX 428383 428443 chrX 434618 434678 3S18 19 6235 13.0 11.5 12.2 1.4 6295 chrX 428383 intron CG32816 - chrX 431530 intron CG32816 - chrX 434678 intron CG32816 - chrX_19_430001 chrX_430001 RAL-223 3431 chrX 551382 551400 chrX 558994 559012 412 4 7612 15.5 7.5 11.5 0.3 7630 chrX 551382 intron Appl + chrX 555197 intron Appl + chrX 559012 intron Appl + chrX_4_555001 chrX_555001 RAL-223 3432 chrX 551405 551453 chrX 558992 559064 412 13 7610 3.5 7.0 5.2 2.1 7659 chrX 551405 intron Appl + chrX 555234 intron Appl + chrX 559064 intron Appl + chrX_13_555001 chrX_555001 RAL-223 3433 chrX 734948 734982 chrX 735536 735565 13 587 11.5 31.0 21.2 0.6 617 chrX 734948 intron sdk + chrX 735256 intron sdk + chrX 735565 intron sdk + chrX_13_735001 chrX_735001 RAL-223 3434 chrX 735001 735029 chrX 735211 735239 9 210 4.5 5.0 4.8 1.6 238 chrX 735001 intron sdk + chrX 735120 intron sdk + chrX 735239 intron sdk + chrX_9_735001 chrX_735001 RAL-223 3435 chrX 735238 735286 chrX 735541 735561 12 280 21.5 31.0 26.2 0.4 323 chrX 735238 intron sdk + chrX 735400 intron sdk + chrX 735561 intron sdk + chrX_12_735001 chrX_735001 RAL-223 3436 chrX 802245 802320 chrX 802371 802415 15 124 9.0 9.0 9.0 1.5 170 chrX 802245 exon CG13359 - chrX 802330 exon CG13359 - chrX 802415 exon CG13359 - chrX_15_800001 chrX_800001 RAL-223 3437 chrX 812227 812300 chrX 817908 817925 297 23 5678 7.5 7.5 7.5 2.7 5698 chrX 812227 intron CG43867 - chrX 815076 intron CG43867 - chrX 817925 intron CG43867 - chrX_23_815001 chrX_815001 RAL-223 3438 chrX 827565 827623 chrX 835402 835465 roo 32 7841 7.5 11.5 9.5 3.0 7900 chrX 827565 intron CG43867 - chrX 831515 intron CG43867 - chrX 835465 intron CG43867 - chrX_32_830001 chrX_830001 RAL-223 3439 chrX 906657 906732 chrX 908496 908571 S-element 30 1838 10.5 5.0 7.8 3.4 1914 chrX 906657 intron CG43867 - chrX 907614 intron CG43867 - chrX 908571 intron CG43867 - chrX_30_905001 chrX_905001 RAL-223 3440 chrX 1033312 1033324 chrX 1040995 1041007 412 6 7681 18.0 8.5 13.2 0.4 7695 chrX 1033312 intron su(w[a]) + chrX 1037160 intron su(w[a]) + chrX 1041007 intron su(w[a]) + chrX_6_1035001 chrX_1035001 RAL-223 3441 chrX 1063714 1063747 chrX 1072557 1072590 roo 17 8843 17.0 8.5 12.8 1.2 8876 chrX 1063714 intron CR44779 + chrX 1068152 intron CR44779 + chrX 1072590 intron CR44779 + chrX_17_1065001 chrX_1065001 RAL-223 3442 chrX 1144392 1144465 chrX 1144701 1144767 30 307 7.5 9.0 8.2 3.3 375 chrX 1144392 intergenic not near genes chrX 1144580 intergenic not near genes chrX 1144767 intergenic not near genes chrX_30_1140001 chrX_1140001 RAL-223 3443 chrX 1218481 1218484 chrX 1218625 1218628 4 144 7.5 20.5 14.0 0.3 147 chrX 1218481 3` UTR CG3638 - chrX 1218554 3` UTR CG3638 - chrX 1218628 3` UTR CG3638 - chrX_4_1215001 chrX_1215001 RAL-223 3444 chrX 1253686 1253759 chrX 1253818 1253891 32 130 8.0 8.5 8.2 3.5 205 chrX 1253686 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253891 intron Atf3 - chrX_32_1250001 chrX_1250001 RAL-223 3445 chrX 1357734 1357791 chrX 1367954 1368011 Doc 26 10220 8.0 6.0 7.0 3.2 10277 chrX 1357734 intergenic png - chrX 1362872 intergenic not near genes chrX 1368011 intergenic not near genes chrX_26_1360001 chrX_1360001 RAL-223 3446 chrX 1440052 1440119 chrX 1440203 1440270 29 149 11.5 12.5 12.0 2.2 218 chrX 1440052 exon futsch + chrX 1440161 exon futsch + chrX 1440270 exon futsch + chrX_29_1440001 chrX_1440001 RAL-223 3447 chrX 1517995 1518067 chrX 1523447 1523519 jockey 24 5451 10.5 7.5 9.0 2.4 5524 chrX 1517995 intergenic inc + chrX 1520757 intergenic not near genes chrX 1523519 intergenic not near genes chrX_24_1520001 chrX_1520001 RAL-223 3448 chrX 1903305 1903377 chrX 1903437 1903509 31 132 4.5 6.5 5.5 4.8 204 chrX 1903305 5` UTR CR43864 + chrX 1903407 5` UTR CR43864 + chrX 1903509 5` UTR CR43864 + chrX_31_1900001 chrX_1900001 RAL-223 3449 chrX 1930494 1930570 chrX 1938115 1938191 opus 21 7620 6.5 9.0 7.8 2.4 7697 chrX 1930494 3` UTR CG11596 + chrX 1934342 intergenic not near genes chrX 1938191 3` UTR CG3857 - chrX_21_1930001 chrX_1930001 RAL-223 3450 chrX 1954841 1954917 chrX 1962830 1962901 Stalker2 26 7983 2.5 3.0 2.8 6.8 8060 chrX 1954841 intron Hr4 + chrX 1958871 intron Hr4 + chrX 1962901 intron Hr4 + chrX_26_1955001 chrX_1955001 RAL-223 3451 chrX 2098570 2098632 chrX 2098688 2098761 19 125 7.0 9.5 8.2 2.1 191 chrX 2098570 intron csw + chrX 2098666 intron csw + chrX 2098761 intron csw + chrX_19_2095001 chrX_2095001 RAL-223 3452 chrX 2146617 2146656 chrX 2146751 2146798 17 141 15.5 9.0 12.2 1.3 181 chrX 2146617 intron Pgd + chrX 2146708 intron Pgd + chrX 2146798 intron Pgd + chrX_17_2145001 chrX_2145001 RAL-223 3453 chrX 2308795 2308817 chrX 2317428 2317450 Tirant 5 8632 7.5 16.0 11.8 0.4 8655 chrX 2308795 intron phl + chrX 2313122 intron phl + chrX 2317450 intron phl + chrX_5_2310001 chrX_2310001 RAL-223 3454 chrX 2353797 2353856 chrX 2353924 2353983 20 127 9.5 7.0 8.2 2.2 186 chrX 2353797 intron ptr - chrX 2353890 intron ptr - chrX 2353983 intron ptr - chrX_20_2350001 chrX_2350001 RAL-223 3455 chrX 2385689 2385764 chrX 2385816 2385864 19 126 8.0 9.0 8.5 2.0 175 chrX 2385689 exon PsGEF - chrX 2385776 intron PsGEF - chrX 2385864 intron PsGEF - chrX_19_2385001 chrX_2385001 RAL-223 3456 chrX 2399796 2399871 chrX 2408188 2408248 roo 22 8391 8.5 0.0 4.2 4.2 8452 chrX 2399796 intergenic not near genes chrX 2404022 intergenic not near genes chrX 2408248 intergenic not near genes chrX_22_2400001 chrX_2400001 RAL-223 3457 chrX 2429428 2429481 chrX 2429565 2429618 7 137 5.0 9.0 7.0 0.9 190 chrX 2429428 intergenic gt - chrX 2429523 intergenic not near genes chrX 2429618 intergenic not near genes chrX_7_2425001 chrX_2425001 RAL-223 3458 chrX 2559323 2559384 chrX 2559461 2559522 16 138 0.0 5.5 2.8 4.2 199 chrX 2559323 intron Pdfr + chrX 2559422 intron Pdfr + chrX 2559522 intron Pdfr + chrX_16_2555001 chrX_2555001 RAL-223 3459 chrX 2578769 2578836 chrX 2578911 2578978 27 142 3.0 11.0 7.0 3.4 209 chrX 2578769 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578978 intergenic Vha36-3 -,Pdfr + chrX_27_2575001 chrX_2575001 RAL-223 3460 chrX 2610342 2610407 chrX 2617509 2617574 HMS-Beagle 18 7167 9.0 7.0 8.0 2.0 7232 chrX 2610342 intergenic CG8636 - chrX 2613958 intergenic not near genes chrX 2617574 intergenic Tsp3A - chrX_18_2610001 chrX_2610001 RAL-223 3461 chrX 2664345 2664406 chrX 2665541 2665602 1360 19 1196 10.5 7.0 8.8 1.9 1257 chrX 2664345 intron sgg + chrX 2664974 intron sgg + chrX 2665602 intron sgg + chrX_19_2660001 chrX_2660001 RAL-223 3462 chrX 2810892 2810936 chrX 2811018 2811063 13 127 3.5 8.0 5.8 1.9 171 chrX 2810892 intron kirre + chrX 2810978 intron kirre + chrX 2811063 intron kirre + chrX_13_2810001 chrX_2810001 RAL-223 3463 chrX 2823754 2823775 chrX 2832352 2832362 roo 10 8595 9.5 12.0 10.8 0.8 8608 chrX 2823754 intron kirre + chrX 2828058 intron kirre + chrX 2832362 intron kirre + chrX_10_2825001 chrX_2825001 RAL-223 3464 chrX 2844860 2844927 chrX 2852320 2852387 mdg1 23 7460 8.0 6.5 7.2 2.8 7527 chrX 2844860 intron kirre + chrX 2848624 intron kirre + chrX 2852387 intron kirre + chrX_23_2845001 chrX_2845001 RAL-223 3465 chrX 2932202 2932253 chrX 2932329 2932336 8 135 5.0 1.5 3.2 1.9 134 chrX 2932202 intron,exon kirre +,CG32793 + chrX 2932269 intron,exon kirre +,CG32793 + chrX 2932336 intron,exon kirre +,CG32793 + chrX_8_2930001 chrX_2930001 RAL-223 3466 chrX 2971986 2972049 chrX 2972176 2972214 30 188 8.0 7.0 7.5 3.5 228 chrX 2971986 intron,intron kirre +,rst - chrX 2972100 intron,intron kirre +,rst - chrX 2972214 intron,intron kirre +,rst - chrX_30_2970001 chrX_2970001 RAL-223 3467 chrX 3015019 3015089 chrX 3015211 3015281 26 192 5.0 9.0 7.0 3.2 262 chrX 3015019 intron kirre + chrX 3015150 intron kirre + chrX 3015281 intron kirre + chrX_26_3015001 chrX_3015001 RAL-223 3468 chrX 3057978 3058036 chrX 3058269 3058327 pogo 23 291 8.5 7.0 7.8 2.6 349 chrX 3057978 intron kirre + chrX 3058152 intron kirre + chrX 3058327 intron kirre + chrX_23_3055001 chrX_3055001 RAL-223 3469 chrX 3075582 3075588 chrX 3080943 3080949 Transpac 4 5361 16.5 0.0 8.2 0.4 5367 chrX 3075582 intron kirre + chrX 3078266 intron kirre + chrX 3080949 intron kirre + chrX_4_3075001 chrX_3075001 RAL-223 3470 chrX 3082550 3082602 chrX 3082670 3082729 9 122 6.0 8.0 7.0 1.1 179 chrX 3082550 intron kirre + chrX 3082640 intron kirre + chrX 3082729 intron kirre + chrX_9_3080001 chrX_3080001 RAL-223 3471 chrX 3109394 3109471 chrX 3109521 3109598 22 127 5.5 6.5 6.0 3.1 204 chrX 3109394 intron kirre + chrX 3109496 intron kirre + chrX 3109598 intron kirre + chrX_22_3105001 chrX_3105001 RAL-223 3472 chrX 3120612 3120632 chrX 3120739 3120759 6 126 3.5 3.0 3.2 1.4 147 chrX 3120612 intron kirre + chrX 3120686 intron kirre + chrX 3120759 intron kirre + chrX_6_3120001 chrX_3120001 RAL-223 3473 chrX 3212593 3212608 chrX 3212728 3212743 6 135 5.0 9.0 7.0 0.8 150 chrX 3212593 intron dnc + chrX 3212668 intron dnc + chrX 3212743 intron dnc + chrX_6_3210001 chrX_3210001 RAL-223 3474 chrX 3218491 3218499 chrX 3227690 3227698 roo 6 9199 1.0 18.0 9.5 0.6 9207 chrX 3218491 intron dnc + chrX 3223094 intron dnc + chrX 3227698 intron dnc + chrX_6_3220001 chrX_3220001 RAL-223 3475 chrX 3243607 3243646 chrX 3243747 3243786 11 139 9.5 8.0 8.8 1.1 179 chrX 3243607 intron dnc + chrX 3243696 intron dnc + chrX 3243786 intron dnc + chrX_11_3240001 chrX_3240001 RAL-223 3476 chrX 3264328 3264379 chrX 3264506 3264556 18 177 12.5 11.0 11.8 1.4 228 chrX 3264328 intron dnc + chrX 3264442 intron dnc + chrX 3264556 intron dnc + chrX_18_3260001 chrX_3260001 RAL-223 3477 chrX 3306296 3306376 chrX 3306428 3306495 15 131 3.5 0.5 2.0 5.0 199 chrX 3306296 intron dnc + chrX 3306396 intron dnc + chrX 3306495 intron dnc + chrX_15_3305001 chrX_3305001 RAL-223 3478 chrX 3351758 3351812 chrX 3351894 3351948 15 134 9.5 12.5 11.0 1.2 190 chrX 3351758 intergenic not near genes chrX 3351853 intergenic not near genes chrX 3351948 intergenic not near genes chrX_15_3350001 chrX_3350001 RAL-223 3479 chrX 3352714 3352747 chrX 3352852 3352886 12 139 14.5 6.5 10.5 1.0 172 chrX 3352714 intergenic not near genes chrX 3352800 intergenic not near genes chrX 3352886 intergenic not near genes chrX_12_3350001 chrX_3350001 RAL-223 3480 chrX 3398093 3398292 chrX 3398224 3398418 32 131 16.5 9.5 13.0 2.3 325 chrX 3398093 intron,intron CR44999 +,CG12535 - chrX 3398256 intron,intron CR44999 +,CG12535 - chrX 3398418 intron,intron CR44999 +,CG12535 - chrX_32_3395001 chrX_3395001 RAL-223 3481 chrX 3408933 3409014 chrX 3409060 3409141 19 127 2.0 4.5 3.2 4.5 208 chrX 3408933 intron,intron CR44999 +,CG12535 - chrX 3409037 intron,intron CR44999 +,CG12535 - chrX 3409141 intron,intron CR44999 +,CG12535 - chrX_19_3405001 chrX_3405001 RAL-223 3482 chrX 3414969 3414992 chrX 3421204 3421227 3S18 6 6235 16.5 7.5 12.0 0.5 6258 chrX 3414969 intron,intron CR44999 +,CG12535 - chrX 3418098 intron,intron CR44999 +,CG12535 - chrX 3421227 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-223 3483 chrX 3414996 3415023 chrX 3421201 3421258 3S18 11 6232 10.0 7.0 8.5 1.2 6262 chrX 3414996 intron,intron CR44999 +,CG12535 - chrX 3418127 intron,intron CR44999 +,CG12535 - chrX 3421258 intron,intron CR44999 +,CG12535 - chrX_11_3415001 chrX_3415001 RAL-223 3484 chrX 3476419 3476496 chrX 3476548 3476633 14 134 6.0 2.5 4.2 2.7 214 chrX 3476419 intron CR44999 + chrX 3476526 intron,3` UTR CR44999 +,CG10804 - chrX 3476633 intron,3` UTR CR44999 +,CG10804 - chrX_14_3475001 chrX_3475001 RAL-223 3485 chrX 3493044 3493116 chrX 3502253 3502322 roo 15 9207 5.5 2.0 3.8 3.1 9278 chrX 3493044 intron,exon CR44999 +,Gas8 - chrX 3497683 intron,intron CR44999 +,Gas8 - chrX 3502322 intron,intron CR44999 +,Gas8 - chrX_15_3495001 chrX_3495001 RAL-223 3486 chrX 3513720 3513782 chrX 3513853 3513915 21 133 3.5 7.5 5.5 3.2 195 chrX 3513720 intron,intron CR44999 +,CG32791 - chrX 3513818 intron,intron CR44999 +,CG32791 - chrX 3513915 intron,intron CR44999 +,CG32791 - chrX_21_3510001 chrX_3510001 RAL-223 3487 chrX 3535367 3535431 chrX 3535508 3535572 27 140 8.5 6.5 7.5 3.2 205 chrX 3535367 intron CG32791 - chrX 3535470 intron CG32791 - chrX 3535572 intron CG32791 - chrX_27_3535001 chrX_3535001 RAL-223 3488 chrX 3553470 3553518 chrX 3553603 3553651 19 133 10.5 10.0 10.2 1.7 181 chrX 3553470 intron CG32791 - chrX 3553560 intron CG32791 - chrX 3553651 intron CG32791 - chrX_19_3550001 chrX_3550001 RAL-223 3489 chrX 3555832 3555868 chrX 3555959 3555964 6 115 10.0 5.0 7.5 0.7 132 chrX 3555832 intron CG32791 - chrX 3555898 intron CG32791 - chrX 3555964 intron CG32791 - chrX_6_3555001 chrX_3555001 RAL-223 3490 chrX 3597510 3597574 chrX 3619728 3619792 roo 22 22217 11.0 6.0 8.5 2.3 22282 chrX 3597510 intron AstA-R1 + chrX 3608651 intron AstA-R1 + chrX 3619792 intron AstA-R1 + chrX_22_3605001 chrX_3605001 RAL-223 3491 chrX 3646405 3646424 chrX 3646541 3646560 8 136 9.0 17.0 13.0 0.6 155 chrX 3646405 intron AstA-R1 + chrX 3646482 intron AstA-R1 + chrX 3646560 intron AstA-R1 + chrX_8_3645001 chrX_3645001 RAL-223 3492 chrX 3657363 3657443 chrX 3657493 3657573 30 130 10.0 7.5 8.8 3.1 210 chrX 3657363 intron AstA-R1 + chrX 3657468 intron AstA-R1 + chrX 3657573 intron AstA-R1 + chrX_30_3655001 chrX_3655001 RAL-223 3493 chrX 3662444 3662467 chrX 3662578 3662601 10 133 11.5 1.0 6.2 1.4 157 chrX 3662444 intron AstA-R1 + chrX 3662522 intron AstA-R1 + chrX 3662601 intron AstA-R1 + chrX_10_3660001 chrX_3660001 RAL-223 3494 chrX 3703663 3703734 chrX 3703801 3703808 4 118 4.0 7.0 5.5 0.6 145 chrX 3703663 intergenic CR45102 + chrX 3703736 intergenic CR45102 + chrX 3703808 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-223 3495 chrX 3713077 3713130 chrX 3713236 3713289 23 159 7.0 11.5 9.2 2.3 212 chrX 3713077 intron Rala - chrX 3713183 intron Rala - chrX 3713289 intron Rala - chrX_23_3710001 chrX_3710001 RAL-223 3496 chrX 3726723 3726724 chrX 3730170 3730171 NOF 4 3447 0.5 0.0 0.2 3.3 3448 chrX 3726723 intron tlk + chrX 3728447 intron tlk + chrX 3730171 intron tlk + chrX_4_3725001 chrX_3725001 RAL-223 3497 chrX 3726725 3726752 chrX 3730169 3730199 NOF 10 3446 0.5 0.0 0.2 8.3 3474 chrX 3726725 intron tlk + chrX 3728462 intron tlk + chrX 3730199 intron tlk + chrX_10_3725001 chrX_3725001 RAL-223 3498 chrX 3736797 3736864 chrX 3736930 3736991 32 132 8.0 9.0 8.5 3.4 194 chrX 3736797 intron tlk + chrX 3736894 intron tlk + chrX 3736991 intron tlk + chrX_32_3735001 chrX_3735001 RAL-223 3499 chrX 3768251 3768284 chrX 3768387 3768420 10 134 2.5 0.0 1.2 4.5 169 chrX 3768251 intron tlk + chrX 3768336 intron tlk + chrX 3768420 intron tlk + chrX_10_3765001 chrX_3765001 RAL-223 3500 chrX 3817061 3817101 chrX 3817190 3817237 13 133 4.0 6.5 5.2 2.1 176 chrX 3817061 intron ec + chrX 3817149 intron ec + chrX 3817237 intron ec + chrX_13_3815001 chrX_3815001 RAL-223 3501 chrX 3842302 3842352 chrX 3842570 3842620 pogo 22 267 4.5 3.5 4.0 4.4 318 chrX 3842302 intron ec + chrX 3842461 intron ec + chrX 3842620 intron ec + chrX_22_3840001 chrX_3840001 RAL-223 3502 chrX 3862779 3862846 chrX 3862916 3862983 17 137 6.5 9.5 8.0 1.9 204 chrX 3862779 intergenic yin - chrX 3862881 intergenic yin - chrX 3862983 3` UTR yin - chrX_17_3860001 chrX_3860001 RAL-223 3503 chrX 3866054 3866101 chrX 3866182 3866229 26 128 16.5 4.0 10.2 2.3 175 chrX 3866054 intron yin - chrX 3866142 intron yin - chrX 3866229 intron yin - chrX_26_3865001 chrX_3865001 RAL-223 3504 chrX 3880451 3880482 chrX 3880587 3880618 8 136 0.0 14.0 7.0 1.0 167 chrX 3880451 intergenic VhaAC39-1 + chrX 3880534 intergenic VhaAC39-1 + chrX 3880618 intergenic VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-223 3505 chrX 3881228 3881298 chrX 3881417 3881487 28 188 8.5 4.0 6.2 3.9 259 chrX 3881228 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881487 exon VhaAC39-1 + chrX_28_3880001 chrX_3880001 RAL-223 3506 chrX 3890612 3890684 chrX 3890987 3891059 23 373 7.5 6.0 6.8 2.9 447 chrX 3890612 intergenic CG15239 + chrX 3890836 intergenic CG15239 + chrX 3891059 intergenic CG42541 - chrX_23_3890001 chrX_3890001 RAL-223 3507 chrX 3899584 3899622 chrX 3899711 3899749 7 123 16.0 10.0 13.0 0.5 165 chrX 3899584 intron CG42541 - chrX 3899666 intron CG42541 - chrX 3899749 intron CG42541 - chrX_7_3895001 chrX_3895001 RAL-223 3508 chrX 3986832 3986886 chrX 3994515 3994543 412 19 7681 8.5 8.5 8.5 2.0 7711 chrX 3986832 intergenic not near genes chrX 3990688 intergenic not near genes chrX 3994543 intergenic not near genes chrX_19_3990001 chrX_3990001 RAL-223 3509 chrX 4029495 4029558 chrX 4029735 4029798 16 240 5.5 14.5 10.0 1.5 303 chrX 4029495 intergenic not near genes chrX 4029646 intergenic not near genes chrX 4029798 intergenic not near genes chrX_16_4025001 chrX_4025001 RAL-223 3510 chrX 4033998 4034069 chrX 4034124 4034196 34 127 8.0 10.0 9.0 3.4 198 chrX 4033998 intergenic not near genes chrX 4034097 intergenic not near genes chrX 4034196 intergenic not near genes chrX_34_4030001 chrX_4030001 RAL-223 3511 chrX 4039029 4039044 chrX 4039158 4039173 7 129 15.5 8.5 12.0 0.5 144 chrX 4039029 intergenic not near genes chrX 4039101 intergenic not near genes chrX 4039173 intergenic not near genes chrX_7_4035001 chrX_4035001 RAL-223 3512 chrX 4055629 4055659 chrX 4055742 4055792 11 130 10.0 10.0 10.0 1.0 163 chrX 4055629 intergenic not near genes chrX 4055710 intergenic not near genes chrX 4055792 intergenic not near genes chrX_11_4055001 chrX_4055001 RAL-223 3513 chrX 4132622 4132691 chrX 4132840 4132909 23 218 4.5 6.5 5.5 3.5 287 chrX 4132622 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132909 3` UTR Fas2 - chrX_23_4130001 chrX_4130001 RAL-223 3514 chrX 4157848 4157915 chrX 4164951 4165018 297 25 7103 7.5 8.5 8.0 2.8 7170 chrX 4157848 intron Fas2 - chrX 4161433 intron Fas2 - chrX 4165018 intron Fas2 - chrX_25_4160001 chrX_4160001 RAL-223 3515 chrX 4195552 4195626 chrX 4195693 4195767 21 141 4.5 4.5 4.5 3.8 215 chrX 4195552 intron Fas2 - chrX 4195660 intron Fas2 - chrX 4195767 intron Fas2 - chrX_21_4195001 chrX_4195001 RAL-223 3516 chrX 4209885 4209953 chrX 4210025 4210093 10 140 0.0 9.0 4.5 1.8 208 chrX 4209885 intergenic not near genes chrX 4209989 intergenic not near genes chrX 4210093 intergenic not near genes chrX_10_4205001 chrX_4205001 RAL-223 3517 chrX 4216293 4216338 chrX 4216422 4216467 21 129 11.0 10.5 10.8 1.8 174 chrX 4216293 intergenic not near genes chrX 4216380 intergenic CG15571 - chrX 4216467 intergenic CG15571 - chrX_21_4215001 chrX_4215001 RAL-223 3518 chrX 4262719 4262775 chrX 4262868 4262924 23 149 0.0 10.5 5.2 3.7 205 chrX 4262719 intergenic not near genes chrX 4262822 intergenic not near genes chrX 4262924 intergenic not near genes chrX_23_4260001 chrX_4260001 RAL-223 3519 chrX 4267276 4267345 chrX 4267406 4267464 27 130 9.0 12.0 10.5 2.3 188 chrX 4267276 intergenic not near genes chrX 4267370 intergenic not near genes chrX 4267464 intergenic not near genes chrX_27_4265001 chrX_4265001 RAL-223 3520 chrX 4276443 4276508 chrX 4276572 4276637 23 128 6.0 10.0 8.0 2.6 194 chrX 4276443 intergenic CG15577 -,CR45483 - chrX 4276540 3` UTR CG15577 - chrX 4276637 exon CG15577 - chrX_23_4275001 chrX_4275001 RAL-223 3521 chrX 4324342 4324411 chrX 4324469 4324538 12 127 4.0 5.5 4.8 2.1 196 chrX 4324342 intron norpA + chrX 4324440 intron norpA + chrX 4324538 intron norpA + chrX_12_4320001 chrX_4320001 RAL-223 3522 chrX 4436461 4436486 chrX 4436594 4436618 10 132 8.0 15.5 11.8 0.8 157 chrX 4436461 intron,intron CR32773 -,bi + chrX 4436540 intron,intron CR32773 -,bi + chrX 4436618 intron,intron CR32773 -,bi + chrX_10_4435001 chrX_4435001 RAL-223 3523 chrX 4525706 4525753 chrX 4525848 4525885 16 141 7.0 3.0 5.0 2.7 179 chrX 4525706 intron CR32773 - chrX 4525796 intron CR32773 - chrX 4525885 intron CR32773 - chrX_16_4525001 chrX_4525001 RAL-223 3524 chrX 4598126 4598164 chrX 4598256 4598294 5 130 0.0 0.0 0.0 5.0 168 chrX 4598126 intron CR32773 - chrX 4598210 intron CR32773 - chrX 4598294 intron CR32773 - chrX_5_4595001 chrX_4595001 RAL-223 3525 chrX 4693764 4693777 chrX 4693864 4693922 9 134 0.0 15.5 7.8 1.0 158 chrX 4693764 intron ctp + chrX 4693843 intron ctp + chrX 4693922 intron ctp + chrX_9_4690001 chrX_4690001 RAL-223 3526 chrX 4700343 4700418 chrX 4700739 4700811 jockey 22 393 7.5 9.5 8.5 2.3 468 chrX 4700343 3` UTR ctp + chrX 4700577 3` UTR ctp + chrX 4700811 3` UTR ctp + chrX_22_4700001 chrX_4700001 RAL-223 3527 chrX 4713244 4713297 chrX 4713508 4713561 14 264 5.0 3.5 4.2 2.7 317 chrX 4713244 intron Proc-R + chrX 4713402 intron Proc-R + chrX 4713561 intron Proc-R + chrX_14_4710001 chrX_4710001 RAL-223 3528 chrX 4763208 4763275 chrX 4763746 4763813 Stalker4 25 538 6.0 6.0 6.0 3.6 605 chrX 4763208 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763813 intergenic not near genes chrX_25_4760001 chrX_4760001 RAL-223 3529 chrX 4792339 4792402 chrX 4792822 4792840 jockey 24 480 6.5 5.5 6.0 3.4 501 chrX 4792339 intergenic not near genes chrX 4792590 intergenic not near genes chrX 4792840 intergenic not near genes chrX_24_4790001 chrX_4790001 RAL-223 3530 chrX 4827931 4827999 chrX 4835347 4835364 Stalker4 28 7414 6.5 7.5 7.0 3.5 7433 chrX 4827931 intergenic not near genes chrX 4831648 intergenic not near genes chrX 4835364 intergenic not near genes chrX_28_4830001 chrX_4830001 RAL-223 3531 chrX 4835580 4835649 chrX 4835791 4835863 18 212 5.5 7.0 6.2 2.5 283 chrX 4835580 intergenic not near genes chrX 4835722 intergenic not near genes chrX 4835863 intergenic not near genes chrX_18_4835001 chrX_4835001 RAL-223 3532 chrX 4864127 4864145 chrX 4864255 4864273 9 127 17.5 11.0 14.2 0.6 146 chrX 4864127 intron CG42594 + chrX 4864200 intron CG42594 + chrX 4864273 intron CG42594 + chrX_9_4860001 chrX_4860001 RAL-223 3533 chrX 4864148 4864162 chrX 4864254 4864288 7 123 14.5 11.5 13.0 0.5 140 chrX 4864148 intron CG42594 + chrX 4864218 intron CG42594 + chrX 4864288 intron CG42594 + chrX_7_4860001 chrX_4860001 RAL-223 3534 chrX 4864163 4864176 chrX 4864251 4864304 6 120 14.5 11.5 13.0 0.4 141 chrX 4864163 intron CG42594 + chrX 4864234 intron CG42594 + chrX 4864304 intron CG42594 + chrX_6_4860001 chrX_4860001 RAL-223 3535 chrX 4931304 4931375 chrX 4931448 4931519 18 143 65.5 67.0 66.2 0.3 215 chrX 4931304 intron CG44774 - chrX 4931412 intron CG44774 - chrX 4931519 intron CG44774 - chrX_18_4930001 chrX_4930001 RAL-223 3536 chrX 4965511 4965581 chrX 4965641 4965711 22 127 5.5 7.0 6.2 3.1 200 chrX 4965511 intron CR44833 - chrX 4965611 intron CR44833 - chrX 4965711 intron CR44833 - chrX_22_4965001 chrX_4965001 RAL-223 3537 chrX 4989998 4990069 chrX 4997262 4997333 roo 23 7263 5.0 8.0 6.5 3.1 7335 chrX 4989998 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997333 intron CR44833 - chrX_23_4990001 chrX_4990001 RAL-223 3538 chrX 5049540 5049566 chrX 5049678 5049704 8 138 11.5 0.0 5.8 1.2 164 chrX 5049540 intron,exon CR44833 -,ovo + chrX 5049622 intron,intron CR44833 -,ovo + chrX 5049704 intron,intron CR44833 -,ovo + chrX_8_5045001 chrX_5045001 RAL-223 3539 chrX 5049568 5049596 chrX 5049670 5049734 19 136 7.0 0.0 3.5 4.2 166 chrX 5049568 intron,intron CR44833 -,ovo + chrX 5049651 intron,intron CR44833 -,ovo + chrX 5049734 intron,intron CR44833 -,ovo + chrX_19_5045001 chrX_5045001 RAL-223 3540 chrX 5096245 5096300 chrX 5103845 5103915 springer 17 7614 4.5 5.0 4.8 2.9 7670 chrX 5096245 intron,intron CG15465 +,rg + chrX 5100080 intron,intron CG15465 +,rg + chrX 5103915 intron,intron CG15465 +,rg + chrX_17_5100001 chrX_5100001 RAL-223 3541 chrX 5220342 5220362 chrX 5220633 5220653 8 290 11.0 6.5 8.8 0.8 311 chrX 5220342 intron,intron CG15465 +,rg + chrX 5220498 intron,intron CG15465 +,rg + chrX 5220653 intron,intron CG15465 +,rg + chrX_8_5220001 chrX_5220001 RAL-223 3542 chrX 5264004 5264073 chrX 5264144 5264213 16 137 4.5 5.5 5.0 2.7 209 chrX 5264004 intergenic not near genes chrX 5264108 intergenic not near genes chrX 5264213 intergenic not near genes chrX_16_5260001 chrX_5260001 RAL-223 3543 chrX 5272770 5272848 chrX 5272907 5272986 17 131 4.5 3.5 4.0 3.4 216 chrX 5272770 intergenic not near genes chrX 5272878 intergenic not near genes chrX 5272986 intergenic not near genes chrX_17_5270001 chrX_5270001 RAL-223 3544 chrX 5291711 5291727 chrX 5291837 5291853 8 125 12.0 0.5 6.2 1.1 142 chrX 5291711 intergenic not near genes chrX 5291782 intergenic not near genes chrX 5291853 intergenic not near genes chrX_8_5290001 chrX_5290001 RAL-223 3545 chrX 5338665 5338719 chrX 5339968 5339976 jockey 13 1299 8.0 4.5 6.2 1.8 1311 chrX 5338665 intergenic not near genes chrX 5339320 intergenic not near genes chrX 5339976 intergenic SK + chrX_13_5335001 chrX_5335001 RAL-223 3546 chrX 5350286 5350315 chrX 5350415 5350444 6 129 15.0 12.0 13.5 0.4 158 chrX 5350286 intron SK + chrX 5350365 intron SK + chrX 5350444 intron SK + chrX_6_5350001 chrX_5350001 RAL-223 3547 chrX 5354011 5354032 chrX 5354153 5354176 6 144 2.0 11.5 6.8 0.8 165 chrX 5354011 intron SK + chrX 5354094 intron SK + chrX 5354176 intron SK + chrX_6_5350001 chrX_5350001 RAL-223 3548 chrX 5366259 5366327 chrX 5366437 5366505 22 178 4.5 7.0 5.8 3.2 246 chrX 5366259 intron SK + chrX 5366382 intron SK + chrX 5366505 intron SK + chrX_22_5365001 chrX_5365001 RAL-223 3549 chrX 5389785 5389788 chrX 5392947 5392950 297 5 3162 5.0 18.0 11.5 0.4 3165 chrX 5389785 intron SK + chrX 5391368 intron SK + chrX 5392950 intron SK + chrX_5_5390001 chrX_5390001 RAL-223 3550 chrX 5456538 5456614 chrX 5456704 5456780 28 166 6.0 9.5 7.8 3.2 242 chrX 5456538 intron SPR + chrX 5456659 intron SPR + chrX 5456780 intron SPR + chrX_28_5455001 chrX_5455001 RAL-223 3551 chrX 5473537 5473614 chrX 5473663 5473740 31 125 4.5 7.0 5.8 4.6 203 chrX 5473537 intron SPR + chrX 5473638 intron SPR + chrX 5473740 intron SPR + chrX_31_5470001 chrX_5470001 RAL-223 3552 chrX 5524795 5524852 chrX 5528704 5528724 412 11 3906 13.5 0.0 6.8 1.4 3929 chrX 5524795 intergenic snoRNA:Psi28S-3342 - chrX 5526760 intergenic not near genes chrX 5528724 intergenic Vsx2 - chrX_11_5525001 chrX_5525001 RAL-223 3553 chrX 5575095 5575176 chrX 5575223 5575305 21 124 7.5 6.0 6.8 2.7 210 chrX 5575095 intergenic not near genes chrX 5575200 intergenic not near genes chrX 5575305 intergenic not near genes chrX_21_5575001 chrX_5575001 RAL-223 3554 chrX 5596474 5596512 chrX 5596603 5596641 17 128 11.5 12.0 11.8 1.3 167 chrX 5596474 intron Vsx1 + chrX 5596558 intron Vsx1 + chrX 5596641 intron Vsx1 + chrX_17_5595001 chrX_5595001 RAL-223 3555 chrX 5727373 5727416 chrX 5732162 5732197 Doc 19 4788 10.5 8.5 9.5 1.8 4824 chrX 5727373 intron CG32758 - chrX 5729785 intron CG32758 - chrX 5732197 intron CG32758 - chrX_19_5725001 chrX_5725001 RAL-223 3556 chrX 5883764 5883835 chrX 5884055 5884126 pogo 20 291 4.0 8.0 6.0 2.9 362 chrX 5883764 intron CR45668 - chrX 5883945 intron CR45668 - chrX 5884126 intron CR45668 - chrX_20_5880001 chrX_5880001 RAL-223 3557 chrX 5884124 5884186 chrX 5884415 5884477 pogo 21 289 12.0 11.0 11.5 1.7 353 chrX 5884124 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884477 intron CR45668 - chrX_21_5880001 chrX_5880001 RAL-223 3558 chrX 5935075 5935102 chrX 5935161 5935182 10 114 3.0 3.0 3.0 2.5 107 chrX 5935075 intron CG3726 + chrX 5935128 intron CG3726 + chrX 5935182 intron CG3726 + chrX_10_5935001 chrX_5935001 RAL-223 3559 chrX 5995324 5995394 chrX 5995453 5995524 19 130 8.5 5.5 7.0 2.4 200 chrX 5995324 intergenic not near genes chrX 5995424 intergenic not near genes chrX 5995524 intergenic not near genes chrX_19_5995001 chrX_5995001 RAL-223 3560 chrX 6057907 6057983 chrX 6058037 6058119 22 129 6.0 4.5 5.2 3.5 212 chrX 6057907 intron CG5921 + chrX 6058013 intron CG5921 + chrX 6058119 intron CG5921 + chrX_22_6055001 chrX_6055001 RAL-223 3561 chrX 6058216 6058269 chrX 6058354 6058392 18 137 0.5 14.0 7.2 2.2 176 chrX 6058216 intron CG5921 + chrX 6058304 intron CG5921 + chrX 6058392 intron CG5921 + chrX_18_6055001 chrX_6055001 RAL-223 3562 chrX 6118656 6118725 chrX 6118788 6118857 20 130 6.5 5.5 6.0 2.9 201 chrX 6118656 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118857 intron Ca-alpha1T - chrX_20_6115001 chrX_6115001 RAL-223 3563 chrX 6171545 6171605 chrX 6179028 6179088 Quasimodo 11 7482 7.0 5.5 6.2 1.5 7543 chrX 6171545 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179088 intron Ca-alpha1T - chrX_11_6175001 chrX_6175001 RAL-223 3564 chrX 6187689 6187762 chrX 6187836 6187909 25 147 6.5 2.5 4.5 4.5 220 chrX 6187689 intron Ca-alpha1T - chrX 6187799 intron Ca-alpha1T - chrX 6187909 intron Ca-alpha1T - chrX_25_6185001 chrX_6185001 RAL-223 3565 chrX 6215488 6215494 chrX 6215619 6215625 4 131 12.0 12.5 12.2 0.3 137 chrX 6215488 intergenic not near genes chrX 6215556 intergenic not near genes chrX 6215625 intergenic not near genes chrX_4_6215001 chrX_6215001 RAL-223 3566 chrX 6215495 6215515 chrX 6215611 6215646 4 127 11.5 12.0 11.8 0.3 151 chrX 6215495 intergenic not near genes chrX 6215570 intergenic not near genes chrX 6215646 intergenic not near genes chrX_4_6215001 chrX_6215001 RAL-223 3567 chrX 6278913 6278978 chrX 6279040 6279105 15 127 12.0 11.0 11.5 1.2 192 chrX 6278913 intron Ubi-p5E - chrX 6279009 intron Ubi-p5E - chrX 6279105 intron Ubi-p5E - chrX_15_6275001 chrX_6275001 RAL-223 3568 chrX 6315134 6315204 chrX 6315262 6315332 28 128 7.5 5.0 6.2 3.9 198 chrX 6315134 intron CG15894 + chrX 6315233 intron CG15894 + chrX 6315332 intron CG15894 + chrX_28_6315001 chrX_6315001 RAL-223 3569 chrX 6335213 6335238 chrX 6337773 6337777 Tirant 10 2558 0.0 14.0 7.0 1.2 2564 chrX 6335213 intergenic not near genes chrX 6336495 intergenic not near genes chrX 6337777 5` UTR CG3842 + chrX_10_6335001 chrX_6335001 RAL-223 3570 chrX 6335239 6335241 chrX 6337748 6337800 Tirant 4 2547 0.0 9.5 4.8 0.7 2561 chrX 6335239 intergenic not near genes chrX 6336520 intergenic not near genes chrX 6337800 5` UTR CG3842 + chrX_4_6335001 chrX_6335001 RAL-223 3571 chrX 6341975 6342004 chrX 6342109 6342138 10 132 11.5 6.5 9.0 1.0 163 chrX 6341975 intron CG3842 + chrX 6342056 intron CG3842 + chrX 6342138 exon CG3842 + chrX_10_6340001 chrX_6340001 RAL-223 3572 chrX 6375189 6375256 chrX 6375445 6375514 25 256 7.0 6.5 6.8 3.2 325 chrX 6375189 intergenic not near genes chrX 6375352 intergenic not near genes chrX 6375514 intergenic not near genes chrX_25_6375001 chrX_6375001 RAL-223 3573 chrX 6388617 6388695 chrX 6388743 6388821 27 126 6.0 5.0 5.5 4.2 204 chrX 6388617 intergenic not near genes chrX 6388719 intergenic not near genes chrX 6388821 intergenic not near genes chrX_27_6385001 chrX_6385001 RAL-223 3574 chrX 6392842 6392902 chrX 6397641 6397713 Doc 17 4814 3.0 5.5 4.2 3.3 4871 chrX 6392842 intergenic not near genes chrX 6395278 intergenic not near genes chrX 6397713 intergenic not near genes chrX_17_6395001 chrX_6395001 RAL-223 3575 chrX 6445263 6445329 chrX 6451071 6451137 297 8 5808 6.5 7.5 7.0 1.0 5874 chrX 6445263 intron CG42340 - chrX 6448200 intron CG42340 - chrX 6451137 intron CG42340 - chrX_8_6445001 chrX_6445001 RAL-223 3576 chrX 6487931 6487982 chrX 6488063 6488114 21 131 7.5 14.0 10.8 1.8 183 chrX 6487931 intron CG42340 - chrX 6488022 intron CG42340 - chrX 6488114 intron CG42340 - chrX_21_6485001 chrX_6485001 RAL-223 3577 chrX 6562781 6562842 chrX 6571305 6571374 Tirant 22 8529 4.0 8.5 6.2 3.1 8593 chrX 6562781 intron CG34417 + chrX 6567078 intron CG34417 + chrX 6571374 intron CG34417 + chrX_22_6565001 chrX_6565001 RAL-223 3578 chrX 6605452 6605497 chrX 6608524 6608569 Burdock 10 3072 4.5 12.5 8.5 1.1 3117 chrX 6605452 intron pigs + chrX 6607010 intron pigs + chrX 6608569 intron pigs + chrX_10_6605001 chrX_6605001 RAL-223 3579 chrX 6629742 6629794 chrX 6629879 6629931 14 137 8.0 8.5 8.2 1.5 189 chrX 6629742 intron pigs + chrX 6629836 intron pigs + chrX 6629931 intron pigs + chrX_14_6625001 chrX_6625001 RAL-223 3580 chrX 6652977 6653029 chrX 6653100 6653153 13 121 10.0 9.5 9.8 1.2 176 chrX 6652977 3` UTR pigs + chrX 6653065 intergenic CG3226 -,pigs + chrX 6653153 3` UTR CG3226 - chrX_13_6650001 chrX_6650001 RAL-223 3581 chrX 6733629 6733673 chrX 6733768 6733812 24 139 13.5 11.0 12.2 1.8 183 chrX 6733629 intron,intron CG3168 -,CR43461 + chrX 6733720 intron,intron CG3168 -,CR43461 + chrX 6733812 intron,intron CG3168 -,CR43461 + chrX_24_6730001 chrX_6730001 RAL-223 3582 chrX 6794961 6795014 chrX 6795097 6795150 28 134 7.5 1.0 4.2 5.4 189 chrX 6794961 intron C3G - chrX 6795056 intron C3G - chrX 6795150 intron C3G - chrX_28_6795001 chrX_6795001 RAL-223 3583 chrX 6814226 6814303 chrX 6814363 6814430 10 134 0.0 2.5 1.2 4.5 204 chrX 6814226 exon iav + chrX 6814328 intron iav + chrX 6814430 intron iav + chrX_10_6810001 chrX_6810001 RAL-223 3584 chrX 6856685 6856709 chrX 6856832 6856856 5 146 13.0 2.0 7.5 0.6 171 chrX 6856685 intron CG14434 - chrX 6856770 intron CG14434 - chrX 6856856 intron CG14434 - chrX_5_6855001 chrX_6855001 RAL-223 3585 chrX 6859556 6859567 chrX 6860018 6860029 5 462 10.0 8.0 9.0 0.5 473 chrX 6859556 intron CG14434 - chrX 6859792 intron CG14434 - chrX 6860029 intron CG14434 - chrX_5_6855001 chrX_6855001 RAL-223 3586 chrX 6896176 6896232 chrX 6896314 6896370 23 138 5.0 8.5 6.8 2.9 194 chrX 6896176 intergenic not near genes chrX 6896273 intergenic not near genes chrX 6896370 intergenic not near genes chrX_23_6895001 chrX_6895001 RAL-223 3587 chrX 6897578 6897708 chrX 6897706 6897868 36 155 0.0 0.0 0.0 36.0 290 chrX 6897578 intergenic not near genes chrX 6897723 intergenic not near genes chrX 6897868 intergenic not near genes chrX_36_6895001 chrX_6895001 RAL-223 3588 chrX 6901344 6901382 chrX 6901470 6901493 10 124 9.5 5.5 7.5 1.2 149 chrX 6901344 intergenic not near genes chrX 6901418 intergenic not near genes chrX 6901493 intergenic not near genes chrX_10_6900001 chrX_6900001 RAL-223 3589 chrX 6984590 6984651 chrX 6984717 6984778 17 127 8.0 8.0 8.0 1.9 188 chrX 6984590 intron ogre - chrX 6984684 intron ogre - chrX 6984778 intron ogre - chrX_17_6980001 chrX_6980001 RAL-223 3590 chrX 6988499 6988523 chrX 6988634 6988658 9 135 16.0 7.5 11.8 0.7 159 chrX 6988499 intron ogre - chrX 6988578 intron ogre - chrX 6988658 intron ogre - chrX_9_6985001 chrX_6985001 RAL-223 3591 chrX 6989476 6989531 chrX 6989613 6989668 23 136 5.5 10.5 8.0 2.6 192 chrX 6989476 intron ogre - chrX 6989572 intron ogre - chrX 6989668 intron ogre - chrX_23_6985001 chrX_6985001 RAL-223 3592 chrX 7023561 7023625 chrX 7031001 7031065 Tabor 25 7439 9.0 7.0 8.0 2.8 7504 chrX 7023561 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031065 intron CG12541 - chrX_25_7025001 chrX_7025001 RAL-223 3593 chrX 7101225 7101277 chrX 7101532 7101584 10 307 3.5 5.5 4.5 1.8 359 chrX 7101225 intron CG4615 - chrX 7101404 intron CG4615 - chrX 7101584 intron CG4615 - chrX_10_7100001 chrX_7100001 RAL-223 3594 chrX 7113680 7113750 chrX 7113809 7113879 28 127 8.5 10.5 9.5 2.7 199 chrX 7113680 intergenic not near genes chrX 7113780 intergenic not near genes chrX 7113879 intergenic not near genes chrX_28_7110001 chrX_7110001 RAL-223 3595 chrX 7125220 7125267 chrX 7134414 7134476 roo 14 9208 0.0 8.5 4.2 2.7 9256 chrX 7125220 intergenic not near genes chrX 7129848 intergenic not near genes chrX 7134476 intergenic not near genes chrX_14_7125001 chrX_7125001 RAL-223 3596 chrX 7156948 7157002 chrX 7157087 7157141 16 139 1.0 10.0 5.5 2.5 193 chrX 7156948 intron CG9650 + chrX 7157044 intron CG9650 + chrX 7157141 intron CG9650 + chrX_16_7155001 chrX_7155001 RAL-223 3597 chrX 7235510 7235543 chrX 7235647 7235679 12 137 3.5 8.0 5.8 1.8 169 chrX 7235510 intron,intron CG9650 +,CR44357 - chrX 7235594 intron,intron CG9650 +,CR44357 - chrX 7235679 intron,intron CG9650 +,CR44357 - chrX_12_7235001 chrX_7235001 RAL-223 3598 chrX 7246969 7246978 chrX 7247074 7247105 4 122 10.0 13.0 11.5 0.3 136 chrX 7246969 intron CR44357 - chrX 7247037 intron CR44357 - chrX 7247105 intron CR44357 - chrX_4_7245001 chrX_7245001 RAL-223 3599 chrX 7637675 7637711 chrX 7637802 7637838 7 121 8.5 8.0 8.2 0.8 163 chrX 7637675 intron ct + chrX 7637756 intron ct + chrX 7637838 intron ct + chrX_7_7635001 chrX_7635001 RAL-223 3600 chrX 7702868 7702923 chrX 7703357 7703412 jockey 27 489 8.0 9.5 8.8 2.8 544 chrX 7702868 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703412 intron CHES-1-like - chrX_27_7700001 chrX_7700001 RAL-223 3601 chrX 7720524 7720575 chrX 7720636 7720672 17 126 6.0 1.0 3.5 3.8 148 chrX 7720524 intergenic not near genes chrX 7720598 intergenic not near genes chrX 7720672 intergenic not near genes chrX_17_7720001 chrX_7720001 RAL-223 3602 chrX 7737079 7737145 chrX 7737241 7737307 17 162 6.0 3.0 4.5 3.1 228 chrX 7737079 5` UTR Tom40 + chrX 7737193 intron Tom40 + chrX 7737307 intron Tom40 + chrX_17_7735001 chrX_7735001 RAL-223 3603 chrX 7793194 7793256 chrX 7793321 7793364 14 127 7.0 9.0 8.0 1.6 170 chrX 7793194 intergenic not near genes chrX 7793279 intergenic not near genes chrX 7793364 intergenic not near genes chrX_14_7790001 chrX_7790001 RAL-223 3604 chrX 7976629 7976685 chrX 7976761 7976817 11 130 4.5 5.5 5.0 1.8 188 chrX 7976629 intron sn + chrX 7976723 intron sn + chrX 7976817 intron sn + chrX_11_7975001 chrX_7975001 RAL-223 3605 chrX 7977015 7977076 chrX 7977155 7977216 10 140 7.0 0.0 3.5 2.2 201 chrX 7977015 intron sn + chrX 7977116 intron sn + chrX 7977216 intron sn + chrX_10_7975001 chrX_7975001 RAL-223 3606 chrX 8024608 8024672 chrX 8024734 8024753 4 114 12.0 7.5 9.8 0.4 145 chrX 8024608 intron Tbh + chrX 8024680 intron Tbh + chrX 8024753 intron Tbh + chrX_4_8020001 chrX_8020001 RAL-223 3607 chrX 8031376 8031451 chrX 8035730 8035810 Juan 24 4358 5.0 7.5 6.2 3.3 4434 chrX 8031376 intergenic not near genes chrX 8033593 intergenic not near genes chrX 8035810 3` UTR CG2233 - chrX_24_8030001 chrX_8030001 RAL-223 3608 chrX 8038873 8038883 chrX 8039005 8039015 4 132 9.5 1.0 5.2 0.6 142 chrX 8038873 3` UTR fs(1)h - chrX 8038944 3` UTR fs(1)h - chrX 8039015 3` UTR fs(1)h - chrX_4_8035001 chrX_8035001 RAL-223 3609 chrX 8085525 8085598 chrX 8085661 8085734 25 136 7.5 3.5 5.5 3.8 209 chrX 8085525 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085734 intron,5` UTR CG2256 -,CR45535 + chrX_25_8085001 chrX_8085001 RAL-223 3610 chrX 8107281 8107299 chrX 8107414 8107432 5 133 9.0 5.0 7.0 0.6 151 chrX 8107281 intron Gclc - chrX 8107356 intron Gclc - chrX 8107432 intron Gclc - chrX_5_8105001 chrX_8105001 RAL-223 3611 chrX 8161810 8161835 chrX 8165398 8165473 33 3596 43.5 57.0 50.2 0.6 3663 chrX 8161810 exon CG10761 - chrX 8163642 intergenic CR45536 + chrX 8165473 exon Or7a - chrX_33_8160001 chrX_8160001 RAL-223 3612 chrX 8288073 8288120 chrX 8288205 8288252 4 132 8.0 1.0 4.5 0.7 179 chrX 8288073 intron nAChRalpha3 - chrX 8288162 intron nAChRalpha3 - chrX 8288252 intron nAChRalpha3 - chrX_4_8285001 chrX_8285001 RAL-223 3613 chrX 8327248 8327271 chrX 8327377 8327400 8 129 9.0 11.0 10.0 0.7 152 chrX 8327248 intron nAChRalpha3 - chrX 8327324 intron nAChRalpha3 - chrX 8327400 intron nAChRalpha3 - chrX_8_8325001 chrX_8325001 RAL-223 3614 chrX 8364804 8364874 chrX 8365241 8365321 BS 11 446 5.5 6.0 5.8 1.6 517 chrX 8364804 intron nAChRalpha3 - chrX 8365062 intron nAChRalpha3 - chrX 8365321 intron nAChRalpha3 - chrX_11_8365001 chrX_8365001 RAL-223 3615 chrX 8371105 8371180 chrX 8371316 8371370 14 203 2.5 4.5 3.5 3.1 265 chrX 8371105 intergenic not near genes chrX 8371238 intergenic not near genes chrX 8371370 intergenic not near genes chrX_14_8370001 chrX_8370001 RAL-223 3616 chrX 8385215 8385269 chrX 8385326 8385390 16 124 4.0 6.0 5.0 2.7 175 chrX 8385215 intergenic not near genes chrX 8385302 intergenic CG1387 + chrX 8385390 intergenic CG1387 + chrX_16_8385001 chrX_8385001 RAL-223 3617 chrX 8392549 8392571 chrX 8392676 8392698 4 127 2.0 14.0 8.0 0.4 149 chrX 8392549 intergenic not near genes chrX 8392624 intergenic not near genes chrX 8392698 intergenic not near genes chrX_4_8390001 chrX_8390001 RAL-223 3618 chrX 8440740 8440757 chrX 8440878 8440895 13 138 19.5 13.0 16.2 0.8 155 chrX 8440740 exon CG1440 + chrX 8440818 3` UTR CG1440 + chrX 8440895 3` UTR CG1440 + chrX_13_8440001 chrX_8440001 RAL-223 3619 chrX 8500897 8500956 chrX 8501111 8501171 6 214 6.0 0.0 3.0 1.5 274 chrX 8500897 intron CG33181 + chrX 8501034 intron CG33181 + chrX 8501171 intron CG33181 + chrX_6_8500001 chrX_8500001 RAL-223 3620 chrX 8505983 8506044 chrX 8506111 8506172 25 128 7.5 10.5 9.0 2.5 189 chrX 8505983 intron CG33181 + chrX 8506078 intron CG33181 + chrX 8506172 intron CG33181 + chrX_25_8505001 chrX_8505001 RAL-223 3621 chrX 8506485 8506559 chrX 8506743 8506817 30 258 6.0 7.0 6.5 4.0 332 chrX 8506485 intron CG33181 + chrX 8506651 intron CG33181 + chrX 8506817 intron CG33181 + chrX_30_8505001 chrX_8505001 RAL-223 3622 chrX 8509072 8509124 chrX 8509199 8509251 16 127 0.0 6.0 3.0 4.0 179 chrX 8509072 intron CG33181 + chrX 8509162 intron CG33181 + chrX 8509251 intron CG33181 + chrX_16_8505001 chrX_8505001 RAL-223 3623 chrX 8573098 8573148 chrX 8573237 8573288 13 137 7.0 2.5 4.8 2.2 190 chrX 8573098 intron spirit - chrX 8573193 intron spirit - chrX 8573288 intron spirit - chrX_13_8570001 chrX_8570001 RAL-223 3624 chrX 8658667 8658720 chrX 8658809 8658871 5 149 7.0 0.0 3.5 1.1 204 chrX 8658667 intergenic not near genes chrX 8658769 intergenic not near genes chrX 8658871 intergenic not near genes chrX_5_8655001 chrX_8655001 RAL-223 3625 chrX 8668602 8668675 chrX 8668989 8669061 9 389 3.0 0.0 1.5 3.6 459 chrX 8668602 intergenic not near genes chrX 8668832 intergenic not near genes chrX 8669061 intergenic not near genes chrX_9_8665001 chrX_8665001 RAL-223 3626 chrX 8705642 8705674 chrX 8706144 8706176 8 502 2.5 3.0 2.8 2.1 534 chrX 8705642 intergenic not near genes chrX 8705909 intergenic not near genes chrX 8706176 intergenic not near genes chrX_8_8705001 chrX_8705001 RAL-223 3627 chrX 8708689 8708767 chrX 8708822 8708901 48 134 43.5 44.5 44.0 1.1 212 chrX 8708689 intergenic not near genes chrX 8708795 intergenic not near genes chrX 8708901 intergenic not near genes chrX_48_8705001 chrX_8705001 RAL-223 3628 chrX 8727351 8727416 chrX 8727478 8727543 12 127 2.5 5.0 3.8 2.5 192 chrX 8727351 intergenic not near genes chrX 8727447 intergenic not near genes chrX 8727543 intergenic not near genes chrX_12_8725001 chrX_8725001 RAL-223 3629 chrX 8772204 8772251 chrX 8772333 8772380 15 128 11.5 9.0 10.2 1.3 176 chrX 8772204 intron Lim1 - chrX 8772292 intron Lim1 - chrX 8772380 intron Lim1 - chrX_15_8770001 chrX_8770001 RAL-223 3630 chrX 8843774 8843856 chrX 8843908 8843993 12 135 4.0 0.5 2.2 3.8 219 chrX 8843774 intron CG12075 + chrX 8843884 intron CG12075 + chrX 8843993 intron CG12075 + chrX_12_8840001 chrX_8840001 RAL-223 3631 chrX 8858533 8858540 chrX 8858659 8858666 4 126 6.0 4.0 5.0 0.7 133 chrX 8858533 intron CG12075 + chrX 8858600 intron CG12075 + chrX 8858666 intron CG12075 + chrX_4_8855001 chrX_8855001 RAL-223 3632 chrX 8892362 8892410 chrX 8892491 8892539 20 127 10.5 5.0 7.8 2.3 177 chrX 8892362 intron Moe - chrX 8892450 intron Moe - chrX 8892539 intron Moe - chrX_20_8890001 chrX_8890001 RAL-223 3633 chrX 8894956 8894998 chrX 8895091 8895134 6 136 1.5 4.5 3.0 1.5 178 chrX 8894956 intron Moe - chrX 8895045 intron Moe - chrX 8895134 intron Moe - chrX_6_8895001 chrX_8895001 RAL-223 3634 chrX 8915227 8915271 chrX 8915363 8915407 11 135 2.5 6.5 4.5 2.0 180 chrX 8915227 intron rdgA + chrX 8915317 intron rdgA + chrX 8915407 intron rdgA + chrX_11_8915001 chrX_8915001 RAL-223 3635 chrX 8922283 8922357 chrX 8922767 8922834 jockey 27 483 8.0 8.0 8.0 3.0 551 chrX 8922283 intron rdgA + chrX 8922558 intron rdgA + chrX 8922834 intron rdgA + chrX_27_8920001 chrX_8920001 RAL-223 3636 chrX 8948713 8948789 chrX 8956273 8956349 roo 35 7560 4.0 11.0 7.5 4.1 7636 chrX 8948713 intron rdgA + chrX 8952531 intron rdgA + chrX 8956349 intron rdgA + chrX_35_8950001 chrX_8950001 RAL-223 3637 chrX 9041953 9042021 chrX 9042111 9042180 8 158 0.0 5.0 2.5 2.3 227 chrX 9041953 intron,intron CR43836 -,CG42388 + chrX 9042066 intron,intron CR43836 -,CG42388 + chrX 9042180 intron,intron CR43836 -,CG42388 + chrX_8_9040001 chrX_9040001 RAL-223 3638 chrX 9152034 9152108 chrX 9152167 9152241 30 133 5.0 9.5 7.2 3.7 207 chrX 9152034 intergenic dalao +,His3.3B - chrX 9152138 intergenic dalao +,His3.3B - chrX 9152241 intergenic dalao +,His3.3B - chrX_30_9150001 chrX_9150001 RAL-223 3639 chrX 9153209 9153228 chrX 9153336 9153355 6 127 3.5 15.0 9.2 0.6 146 chrX 9153209 3` UTR His3.3B - chrX 9153282 3` UTR His3.3B - chrX 9153355 3` UTR His3.3B - chrX_6_9150001 chrX_9150001 RAL-223 3640 chrX 9190744 9190782 chrX 9190885 9190925 4 140 8.0 11.0 9.5 0.4 181 chrX 9190744 intergenic CG12115 - chrX 9190834 intergenic CG12115 - chrX 9190925 intergenic CG12115 - chrX_4_9190001 chrX_9190001 RAL-223 3641 chrX 9202670 9202687 chrX 9202796 9202813 7 126 7.5 4.0 5.8 1.0 143 chrX 9202670 intergenic not near genes chrX 9202742 intergenic not near genes chrX 9202813 intergenic not near genes chrX_7_9200001 chrX_9200001 RAL-223 3642 chrX 9218050 9218086 chrX 9218191 9218227 9 141 6.5 9.5 8.0 1.0 177 chrX 9218050 3` UTR t - chrX 9218138 3` UTR t - chrX 9218227 3` UTR t - chrX_9_9215001 chrX_9215001 RAL-223 3643 chrX 9337897 9337967 chrX 9338039 9338109 28 141 6.5 7.0 6.8 3.6 212 chrX 9337897 intron CG34449 - chrX 9338003 intron CG34449 - chrX 9338109 exon CG34449 - chrX_28_9335001 chrX_9335001 RAL-223 3644 chrX 9353680 9353755 chrX 9353956 9354030 27 272 9.0 6.5 7.8 3.1 350 chrX 9353680 intron CG34449 - chrX 9353855 intron CG34449 - chrX 9354030 intron CG34449 - chrX_27_9350001 chrX_9350001 RAL-223 3645 chrX 9391524 9391601 chrX 9391720 9391797 35 196 5.5 5.5 5.5 5.4 273 chrX 9391524 intron mgl - chrX 9391660 intron mgl - chrX 9391797 intron mgl - chrX_35_9390001 chrX_9390001 RAL-223 3646 chrX 9430204 9430225 chrX 9430647 9430673 11 448 12.0 9.0 10.5 1.0 469 chrX 9430204 intron mgl - chrX 9430438 intron mgl - chrX 9430673 intron mgl - chrX_11_9430001 chrX_9430001 RAL-223 3647 chrX 9503211 9503211 chrX 22383088 22383377 17 12880097 22.0 212.0 117.0 0.1 12880166 chrX 9503211 3` UTR CG32700 - chrX 15943294 intron CG8924 + chrX 22383377 intergenic not near genes chrX_17_15940001 chrX_15940001 RAL-223 3648 chrX 9508095 9508131 chrX 9509663 9509699 jockey 15 1568 11.0 7.5 9.2 1.5 1604 chrX 9508095 intron CG32700 - chrX 9508897 intron CG32700 - chrX 9509699 intron CG32700 - chrX_15_9505001 chrX_9505001 RAL-223 3649 chrX 9508135 9508157 chrX 9509653 9509725 jockey 10 1563 9.5 7.0 8.2 1.1 1590 chrX 9508135 intron CG32700 - chrX 9508930 intron CG32700 - chrX 9509725 intron CG32700 - chrX_10_9505001 chrX_9505001 RAL-223 3650 chrX 9531609 9531652 chrX 9531739 9531782 15 130 7.5 0.0 3.8 3.1 173 chrX 9531609 intron CG32700 - chrX 9531696 intron CG32700 - chrX 9531782 intron CG32700 - chrX_15_9530001 chrX_9530001 RAL-223 3651 chrX 9575746 9575815 chrX 9576119 9576189 mdg3 26 372 7.0 6.0 6.5 3.5 443 chrX 9575746 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576189 intron,5` UTR CG32699 -,CG42395 - chrX_26_9575001 chrX_9575001 RAL-223 3652 chrX 9576992 9577048 chrX 9577492 9577548 18 500 7.0 9.5 8.2 2.0 556 chrX 9576992 intron CG32699 - chrX 9577270 intron CG32699 - chrX 9577548 intron CG32699 - chrX_18_9575001 chrX_9575001 RAL-223 3653 chrX 9577053 9577058 chrX 9577553 9577558 4 500 5.5 21.5 13.5 0.3 505 chrX 9577053 intron CG32699 - chrX 9577306 intron CG32699 - chrX 9577558 intron CG32699 - chrX_4_9575001 chrX_9575001 RAL-223 3654 chrX 9616958 9617026 chrX 9617087 9617094 7 117 6.0 0.5 3.2 1.7 136 chrX 9616958 intron CG42797 + chrX 9617026 intron CG42797 + chrX 9617094 intron CG42797 + chrX_7_9615001 chrX_9615001 RAL-223 3655 chrX 9732331 9732381 chrX 9732457 9732513 13 127 3.0 5.0 4.0 2.6 182 chrX 9732331 intron Sp1 + chrX 9732422 intron Sp1 + chrX 9732513 intron Sp1 + chrX_13_9730001 chrX_9730001 RAL-223 3656 chrX 9757999 9758047 chrX 9758134 9758182 9 135 11.0 0.0 5.5 1.4 183 chrX 9757999 intergenic not near genes chrX 9758090 intergenic not near genes chrX 9758182 intergenic not near genes chrX_9_9755001 chrX_9755001 RAL-223 3657 chrX 9776372 9776394 chrX 9776503 9776525 6 131 2.0 8.0 5.0 1.0 153 chrX 9776372 intergenic not near genes chrX 9776448 intergenic not near genes chrX 9776525 intergenic not near genes chrX_6_9775001 chrX_9775001 RAL-223 3658 chrX 9791817 9791894 chrX 9791966 9792041 25 147 2.5 6.5 4.5 4.5 224 chrX 9791817 intron CG32698 + chrX 9791929 intron CG32698 + chrX 9792041 intron CG32698 + chrX_25_9790001 chrX_9790001 RAL-223 3659 chrX 9839304 9839329 chrX 9839437 9839462 10 133 5.0 8.5 6.8 1.3 158 chrX 9839304 intron CG32698 + chrX 9839383 intron CG32698 + chrX 9839462 intron CG32698 + chrX_10_9835001 chrX_9835001 RAL-223 3660 chrX 9846170 9846208 chrX 9846296 9846329 8 125 3.5 9.5 6.5 1.1 159 chrX 9846170 exon CG32698 + chrX 9846250 intron CG32698 + chrX 9846329 intron CG32698 + chrX_8_9845001 chrX_9845001 RAL-223 3661 chrX 9912052 9912085 chrX 9912206 9912239 4 150 0.0 10.5 5.2 0.6 187 chrX 9912052 intergenic not near genes chrX 9912146 intergenic not near genes chrX 9912239 intergenic not near genes chrX_4_9910001 chrX_9910001 RAL-223 3662 chrX 10111599 10111638 chrX 10111731 10111783 9 138 7.5 0.0 3.8 1.9 184 chrX 10111599 intron RhoU + chrX 10111691 intron RhoU + chrX 10111783 intron RhoU + chrX_9_10110001 chrX_10110001 RAL-223 3663 chrX 10133583 10133610 chrX 10133720 10133747 10 135 13.0 11.5 12.2 0.8 164 chrX 10133583 intron,intron RhoU +,CR44894 - chrX 10133665 intron,intron RhoU +,CR44894 - chrX 10133747 intron,intron RhoU +,CR44894 - chrX_10_10130001 chrX_10130001 RAL-223 3664 chrX 10138193 10138243 chrX 10145747 10145797 412 14 7554 7.5 7.0 7.2 1.7 7604 chrX 10138193 intron,intron RhoU +,CR44894 - chrX 10141995 intron,intron RhoU +,CR44894 - chrX 10145797 intron,intron RhoU +,CR44894 - chrX_14_10140001 chrX_10140001 RAL-223 3665 chrX 10151879 10151938 chrX 10152006 10152065 9 127 10.0 6.0 8.0 1.0 186 chrX 10151879 intron CR44894 - chrX 10151972 intron CR44894 - chrX 10152065 intron CR44894 - chrX_9_10150001 chrX_10150001 RAL-223 3666 chrX 10216809 10216848 chrX 10216937 10216979 16 128 15.0 9.0 12.0 1.2 170 chrX 10216809 3` UTR l(1)G0230 + chrX 10216894 3` UTR l(1)G0230 + chrX 10216979 3` UTR l(1)G0230 + chrX_16_10215001 chrX_10215001 RAL-223 3667 chrX 10231768 10231822 chrX 10231886 10231904 10 109 5.0 8.0 6.5 1.3 136 chrX 10231768 exon Ipod - chrX 10231836 exon Ipod - chrX 10231904 exon Ipod - chrX_10_10230001 chrX_10230001 RAL-223 3668 chrX 10285845 10285904 chrX 10286231 10286290 15 386 3.5 6.0 4.8 2.6 445 chrX 10285845 intron alpha-Man-I - chrX 10286068 intron alpha-Man-I - chrX 10286290 intron alpha-Man-I - chrX_15_10285001 chrX_10285001 RAL-223 3669 chrX 10306016 10306076 chrX 10306147 10306210 13 130 9.0 0.0 4.5 2.4 194 chrX 10306016 intron alpha-Man-I - chrX 10306113 intron alpha-Man-I - chrX 10306210 intron alpha-Man-I - chrX_13_10305001 chrX_10305001 RAL-223 3670 chrX 10317503 10317579 chrX 10317632 10317707 18 128 2.5 4.5 3.5 4.0 204 chrX 10317503 intron alpha-Man-I - chrX 10317605 intron alpha-Man-I - chrX 10317707 intron alpha-Man-I - chrX_18_10315001 chrX_10315001 RAL-223 3671 chrX 10334918 10334979 chrX 10335140 10335176 13 219 9.0 3.5 6.2 1.8 258 chrX 10334918 intron CG43740 + chrX 10335047 intron CG43740 + chrX 10335176 intron CG43740 + chrX_13_10335001 chrX_10335001 RAL-223 3672 chrX 10348755 10348814 chrX 10356370 10356429 springer 13 7615 8.5 4.5 6.5 1.7 7674 chrX 10348755 intergenic snoRNA:U3:9B + chrX 10352592 intergenic not near genes chrX 10356429 intergenic l(1)G0289 - chrX_13_10350001 chrX_10350001 RAL-223 3673 chrX 10367138 10367205 chrX 10367297 10367364 30 156 9.0 6.5 7.8 3.4 226 chrX 10367138 exon CG32679 - chrX 10367251 intron CG32679 - chrX 10367364 exon CG32679 - chrX_30_10365001 chrX_10365001 RAL-223 3674 chrX 10401355 10401424 chrX 10401486 10401550 30 131 4.5 2.5 3.5 6.7 195 chrX 10401355 intron flw + chrX 10401452 intron flw + chrX 10401550 intron flw + chrX_30_10400001 chrX_10400001 RAL-223 3675 chrX 10525025 10525047 chrX 10532144 10532166 297 9 7119 13.0 4.0 8.5 0.9 7141 chrX 10525025 intron spri - chrX 10528596 intron spri - chrX 10532166 intron spri - chrX_9_10525001 chrX_10525001 RAL-223 3676 chrX 10550289 10550360 chrX 10550417 10550488 18 128 7.0 5.5 6.2 2.5 199 chrX 10550289 intron spri - chrX 10550388 intron spri - chrX 10550488 intron spri - chrX_18_10550001 chrX_10550001 RAL-223 3677 chrX 10550815 10550882 chrX 10552332 10552389 hobo 23 1516 7.0 11.0 9.0 2.3 1574 chrX 10550815 intron spri - chrX 10551602 intron spri - chrX 10552389 intron spri - chrX_23_10550001 chrX_10550001 RAL-223 3678 chrX 10686006 10686074 chrX 10691193 10691240 roo 19 5186 10.5 1.0 5.8 2.8 5234 chrX 10686006 intron X11Lbeta + chrX 10688623 intron X11Lbeta + chrX 10691240 intron X11Lbeta + chrX_19_10685001 chrX_10685001 RAL-223 3679 chrX 10700366 10700379 chrX 10700499 10700512 5 132 8.5 9.0 8.8 0.5 146 chrX 10700366 exon X11Lbeta + chrX 10700439 exon X11Lbeta + chrX 10700512 exon X11Lbeta + chrX_5_10700001 chrX_10700001 RAL-223 3680 chrX 10719073 10719137 chrX 10719218 10719271 10 136 0.0 13.0 6.5 1.3 198 chrX 10719073 intron CG32676 - chrX 10719172 intron CG32676 - chrX 10719271 intron CG32676 - chrX_10_10715001 chrX_10715001 RAL-223 3681 chrX 10772644 10772695 chrX 10772766 10772828 Tirant 19 130 6.5 9.5 8.0 2.1 184 chrX 10772644 intron CG15211 + chrX 10772736 intron CG15211 + chrX 10772828 intron CG15211 + chrX_19_10770001 chrX_10770001 RAL-223 3682 chrX 10802988 10803048 chrX 10803123 10803183 21 135 9.0 11.0 10.0 1.9 195 chrX 10802988 intron Imp - chrX 10803086 intron Imp - chrX 10803183 intron Imp - chrX_21_10800001 chrX_10800001 RAL-223 3683 chrX 10813688 10813746 chrX 10813847 10813905 20 159 6.0 6.0 6.0 2.9 217 chrX 10813688 5` UTR Imp - chrX 10813796 5` UTR Imp - chrX 10813905 5` UTR Imp - chrX_20_10810001 chrX_10810001 RAL-223 3684 chrX 10876575 10876646 chrX 10876703 10876769 15 127 7.0 5.5 6.2 2.1 194 chrX 10876575 intron CG1637 - chrX 10876672 intron CG1637 - chrX 10876769 intron CG1637 - chrX_15_10875001 chrX_10875001 RAL-223 3685 chrX 10923661 10923718 chrX 10923789 10923846 18 128 6.0 7.5 6.8 2.3 185 chrX 10923661 intergenic CG43901 +,v + chrX 10923754 intergenic v +,CG43901 + chrX 10923846 intergenic v +,CG43901 + chrX_18_10920001 chrX_10920001 RAL-223 3686 chrX 11095958 11096020 chrX 11103110 11103172 HMS-Beagle 19 7152 7.5 9.5 8.5 2.0 7214 chrX 11095958 intergenic not near genes chrX 11099565 intergenic not near genes chrX 11103172 intron CG42249 + chrX_19_11095001 chrX_11095001 RAL-223 3687 chrX 11184207 11184272 chrX 11189333 11189398 flea 19 5126 8.0 5.5 6.8 2.4 5191 chrX 11184207 intergenic not near genes chrX 11186802 intergenic not near genes chrX 11189398 intergenic not near genes chrX_19_11185001 chrX_11185001 RAL-223 3688 chrX 11254124 11254189 chrX 11254285 11254332 18 160 7.0 4.0 5.5 2.8 208 chrX 11254124 intron CG44422 - chrX 11254228 intron CG44422 - chrX 11254332 intron CG44422 - chrX_18_11250001 chrX_11250001 RAL-223 3689 chrX 11258151 11258445 chrX 11258283 11258571 30 128 11.5 3.5 7.5 3.5 420 chrX 11258151 intron CG44422 - chrX 11258361 intron CG44422 - chrX 11258571 intron CG44422 - chrX_30_11255001 chrX_11255001 RAL-223 3690 chrX 11297682 11297720 chrX 11297823 11297836 4 135 6.0 6.5 6.2 0.6 154 chrX 11297682 intron CG44422 - chrX 11297759 intron CG44422 - chrX 11297836 intron CG44422 - chrX_4_11295001 chrX_11295001 RAL-223 3691 chrX 11312016 11312081 chrX 11319419 11319463 Stalker2 24 7400 8.0 7.0 7.5 2.8 7447 chrX 11312016 intergenic not near genes chrX 11315740 intergenic not near genes chrX 11319463 intergenic not near genes chrX_24_11315001 chrX_11315001 RAL-223 3692 chrX 11319909 11319921 chrX 11320068 11320080 5 159 2.0 14.0 8.0 0.6 171 chrX 11319909 intergenic not near genes chrX 11319994 intergenic not near genes chrX 11320080 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-223 3693 chrX 11379716 11379776 chrX 11379911 11379971 25 195 7.5 6.0 6.8 3.2 255 chrX 11379716 intron dlg1 + chrX 11379844 intron dlg1 + chrX 11379971 intron dlg1 + chrX_25_11375001 chrX_11375001 RAL-223 3694 chrX 11535002 11535046 chrX 11541516 11541566 Burdock 15 6520 11.0 8.0 9.5 1.4 6564 chrX 11535002 intron Drak + chrX 11538284 intron Drak + chrX 11541566 intron Drak + chrX_15_11535001 chrX_11535001 RAL-223 3695 chrX 11554862 11554938 chrX 11555228 11555304 19 366 26.5 50.0 38.2 0.5 442 chrX 11554862 3` UTR Drak + chrX 11555083 3` UTR CG1572 - chrX 11555304 3` UTR CG1572 - chrX_19_11555001 chrX_11555001 RAL-223 3696 chrX 11633370 11633441 chrX 11640474 11640545 297 24 7104 6.5 4.0 5.2 3.9 7175 chrX 11633370 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640545 intron Ptp10D + chrX_24_11635001 chrX_11635001 RAL-223 3697 chrX 11645070 11645130 chrX 11648290 11648350 NOF 10 3220 6.0 4.5 5.2 1.6 3280 chrX 11645070 intron Ptp10D + chrX 11646710 intron Ptp10D + chrX 11648350 intron Ptp10D + chrX_10_11645001 chrX_11645001 RAL-223 3698 chrX 11684822 11684882 chrX 11684998 11685053 28 175 11.5 0.5 6.0 4.0 231 chrX 11684822 intron bif + chrX 11684938 intron bif + chrX 11685053 intron bif + chrX_28_11680001 chrX_11680001 RAL-223 3699 chrX 11719829 11719890 chrX 11719959 11720020 18 130 7.5 6.0 6.8 2.3 191 chrX 11719829 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11720020 intergenic prtp +,Tango10 + chrX_18_11715001 chrX_11715001 RAL-223 3700 chrX 11798969 11799031 chrX 11799105 11799167 17 131 8.5 4.5 6.5 2.3 198 chrX 11798969 intron CkIIbeta + chrX 11799068 intron CkIIbeta + chrX 11799167 intron CkIIbeta + chrX_17_11795001 chrX_11795001 RAL-223 3701 chrX 11922314 11922382 chrX 11922497 11922565 22 183 4.5 9.5 7.0 2.8 251 chrX 11922314 exon Sclp - chrX 11922440 intron Sclp - chrX 11922565 intron Sclp - chrX_22_11920001 chrX_11920001 RAL-223 3702 chrX 11945023 11945084 chrX 11945176 11945237 10 153 4.0 8.0 6.0 1.4 214 chrX 11945023 intron cac - chrX 11945130 intron cac - chrX 11945237 intron cac - chrX_10_11945001 chrX_11945001 RAL-223 3703 chrX 12055082 12055148 chrX 12055209 12055275 21 127 7.0 6.5 6.8 2.7 193 chrX 12055082 intron,intron CR43960 +,Ten-a + chrX 12055178 intron,intron CR43960 +,Ten-a + chrX 12055275 intron,intron CR43960 +,Ten-a + chrX_21_12055001 chrX_12055001 RAL-223 3704 chrX 12094013 12094062 chrX 12094155 12094204 15 141 3.0 11.5 7.2 1.8 191 chrX 12094013 intron,intron CR43960 +,Ten-a + chrX 12094108 intron,intron CR43960 +,Ten-a + chrX 12094204 intron,intron CR43960 +,Ten-a + chrX_15_12090001 chrX_12090001 RAL-223 3705 chrX 12168097 12168135 chrX 12173589 12173622 I-element 9 5491 8.5 2.0 5.2 1.5 5525 chrX 12168097 intron Ten-a + chrX 12170860 intron Ten-a + chrX 12173622 intron Ten-a + chrX_9_12170001 chrX_12170001 RAL-223 3706 chrX 12176707 12176768 chrX 12176832 12176894 23 126 3.0 9.0 6.0 3.3 187 chrX 12176707 intron,3` UTR Ten-a +,CG1924 - chrX 12176800 intron,3` UTR Ten-a +,CG1924 - chrX 12176894 intron,3` UTR Ten-a +,CG1924 - chrX_23_12175001 chrX_12175001 RAL-223 3707 chrX 12191556 12191585 chrX 12191694 12191723 7 138 1.5 12.0 6.8 0.9 167 chrX 12191556 intron Ten-a + chrX 12191640 intron Ten-a + chrX 12191723 intron Ten-a + chrX_7_12190001 chrX_12190001 RAL-223 3708 chrX 12246924 12246957 chrX 12247062 12247095 6 137 9.0 3.5 6.2 0.8 171 chrX 12246924 intron Ten-a + chrX 12247010 intron Ten-a + chrX 12247095 intron Ten-a + chrX_6_12245001 chrX_12245001 RAL-223 3709 chrX 12308149 12308218 chrX 12308310 12308361 7 152 5.0 0.0 2.5 2.0 212 chrX 12308149 intron Ten-a + chrX 12308255 intron Ten-a + chrX 12308361 intron Ten-a + chrX_7_12305001 chrX_12305001 RAL-223 3710 chrX 12312545 12312562 chrX 12312671 12312688 8 126 12.0 9.5 10.8 0.7 143 chrX 12312545 intron Ten-a + chrX 12312616 intron Ten-a + chrX 12312688 intron Ten-a + chrX_8_12310001 chrX_12310001 RAL-223 3711 chrX 12356859 12356877 chrX 12357021 12357039 4 162 5.0 14.5 9.8 0.4 180 chrX 12356859 intergenic not near genes chrX 12356949 intergenic not near genes chrX 12357039 intergenic not near genes chrX_4_12355001 chrX_12355001 RAL-223 3712 chrX 12375441 12375513 chrX 12375589 12375661 20 146 3.5 6.5 5.0 3.3 220 chrX 12375441 intergenic Ir11a - chrX 12375551 intergenic Ir11a - chrX 12375661 exon Ir11a - chrX_20_12375001 chrX_12375001 RAL-223 3713 chrX 12381808 12381854 chrX 12385771 12385817 flea 11 3963 4.0 8.0 6.0 1.6 4009 chrX 12381808 intergenic not near genes chrX 12383812 intergenic not near genes chrX 12385817 intergenic not near genes chrX_11_12380001 chrX_12380001 RAL-223 3714 chrX 12492952 12492961 chrX 13057295 13057304 7 564343 10.5 20.0 15.2 0.4 564352 chrX 12492952 3` UTR Lsp1alpha + chrX 12775128 3` UTR CG32647 - chrX 13057304 intron rad + chrX_7_12775001 chrX_12775001 RAL-223 3715 chrX 12511281 12511351 chrX 12511413 12511485 9 133 0.0 7.0 3.5 2.0 204 chrX 12511281 intron CG2556 + chrX 12511383 intron CG2556 + chrX 12511485 intron CG2556 + chrX_9_12510001 chrX_12510001 RAL-223 3716 chrX 12532599 12532671 chrX 12532795 12532842 13 176 5.0 0.0 2.5 3.7 243 chrX 12532599 intron CG43921 - chrX 12532720 intron CG43921 - chrX 12532842 intron CG43921 - chrX_13_12530001 chrX_12530001 RAL-223 3717 chrX 12557108 12557150 chrX 12557233 12557276 10 121 14.5 14.0 14.2 0.7 168 chrX 12557108 intron CG43921 - chrX 12557192 intron CG43921 - chrX 12557276 intron CG43921 - chrX_10_12555001 chrX_12555001 RAL-223 3718 chrX 12635401 12635430 chrX 12635536 12635565 10 135 6.0 10.5 8.2 1.1 164 chrX 12635401 intron Tomosyn + chrX 12635483 intron Tomosyn + chrX 12635565 intron Tomosyn + chrX_10_12635001 chrX_12635001 RAL-223 3719 chrX 12708408 12708424 chrX 12708535 12708550 5 127 13.5 17.0 15.2 0.3 142 chrX 12708408 intron,exon Smr -,CG15725 + chrX 12708479 intron,exon Smr -,CG15725 + chrX 12708550 intron,exon Smr -,CG15725 + chrX_5_12705001 chrX_12705001 RAL-223 3720 chrX 12754671 12754680 chrX 12754893 12754918 8 236 8.0 19.0 13.5 0.6 247 chrX 12754671 intergenic CR44619 + chrX 12754794 intergenic CR44619 + chrX 12754918 intergenic CR44619 + chrX_8_12750001 chrX_12750001 RAL-223 3721 chrX 12785397 12785442 chrX 12785524 12785569 18 127 10.5 12.5 11.5 1.4 172 chrX 12785397 intergenic Pde9 -,CG32647 - chrX 12785483 intergenic Pde9 - chrX 12785569 3` UTR Pde9 - chrX_18_12785001 chrX_12785001 RAL-223 3722 chrX 12882093 12882155 chrX 12882227 12882279 24 134 7.0 4.0 5.5 3.7 186 chrX 12882093 intron Pde9 - chrX 12882186 intron Pde9 - chrX 12882279 intron Pde9 - chrX_24_12880001 chrX_12880001 RAL-223 3723 chrX 12912580 12912652 chrX 12912729 12912744 9 142 1.5 4.5 3.0 2.2 164 chrX 12912580 5` UTR CR45625 + chrX 12912662 5` UTR CR45625 + chrX 12912744 5` UTR CR45625 + chrX_9_12910001 chrX_12910001 RAL-223 3724 chrX 12930546 12930599 chrX 12937712 12937765 HMS-Beagle 19 7166 6.5 10.5 8.5 2.0 7219 chrX 12930546 intron fne + chrX 12934156 intron fne + chrX 12937765 intron fne + chrX_19_12930001 chrX_12930001 RAL-223 3725 chrX 8810799 8810799 chrX 12946234 12946234 5 4135435 23.5 25.5 24.5 0.2 4135435 chrX 8810799 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946234 3` UTR fne + chrX_5_10875001 chrX_10875001 RAL-223 3726 chrX 12953843 12953924 chrX 12954031 12954113 13 188 5.0 3.0 4.0 2.6 270 chrX 12953843 intron hec - chrX 12953978 intron hec - chrX 12954113 intron hec - chrX_13_12950001 chrX_12950001 RAL-223 3727 chrX 12977035 12977063 chrX 12977161 12977189 9 125 2.0 19.0 10.5 0.8 154 chrX 12977035 intergenic not near genes chrX 12977112 intergenic not near genes chrX 12977189 intergenic not near genes chrX_9_12975001 chrX_12975001 RAL-223 3728 chrX 13058409 13058448 chrX 13058596 13058615 12 185 11.0 6.5 8.8 1.2 206 chrX 13058409 intron rad + chrX 13058512 intron rad + chrX 13058615 intron rad + chrX_12_13055001 chrX_13055001 RAL-223 3729 chrX 13061303 13061373 chrX 13061464 13061534 26 159 7.0 7.5 7.2 3.2 231 chrX 13061303 intron rad + chrX 13061418 intron rad + chrX 13061534 intron rad + chrX_26_13060001 chrX_13060001 RAL-223 3730 chrX 13099069 13099113 chrX 13099205 13099256 14 140 1.0 6.0 3.5 3.1 187 chrX 13099069 intron CG43313 - chrX 13099162 intron CG43313 - chrX 13099256 intron CG43313 - chrX_14_13095001 chrX_13095001 RAL-223 3731 chrX 13172303 13172376 chrX 13172429 13172502 25 125 9.5 7.5 8.5 2.6 199 chrX 13172303 intron CG34411 - chrX 13172402 intron CG34411 - chrX 13172502 intron CG34411 - chrX_25_13170001 chrX_13170001 RAL-223 3732 chrX 13262434 13262476 chrX 13262588 13262630 14 154 8.5 5.0 6.8 1.8 196 chrX 13262434 3` UTR comt + chrX 13262532 intergenic comt +,HDAC4 - chrX 13262630 intergenic HDAC4 -,comt + chrX_14_13260001 chrX_13260001 RAL-223 3733 chrX 13269148 13269192 chrX 13269276 13269318 7 128 5.0 0.0 2.5 2.0 170 chrX 13269148 intron HDAC4 - chrX 13269233 intron HDAC4 - chrX 13269318 intron HDAC4 - chrX_7_13265001 chrX_13265001 RAL-223 3734 chrX 13347006 13347037 chrX 13347163 13347194 4 157 1.0 8.5 4.8 0.7 188 chrX 13347006 intergenic not near genes chrX 13347100 intergenic not near genes chrX 13347194 intergenic not near genes chrX_4_13345001 chrX_13345001 RAL-223 3735 chrX 13354906 13354928 chrX 13355033 13355048 9 126 7.0 0.0 3.5 2.0 142 chrX 13354906 intergenic not near genes chrX 13354977 intergenic not near genes chrX 13355048 intergenic not near genes chrX_9_13350001 chrX_13350001 RAL-223 3736 chrX 13374795 13374863 chrX 13374925 13374992 21 130 4.5 5.5 5.0 3.5 197 chrX 13374795 intron CG1640 + chrX 13374894 intron CG1640 + chrX 13374992 intron CG1640 + chrX_21_13370001 chrX_13370001 RAL-223 3737 chrX 13401438 13401447 chrX 13401840 13401849 jockey 4 402 6.5 6.0 6.2 0.6 411 chrX 13401438 intergenic CG1673 +,CG12725 - chrX 13401644 intergenic CG12725 -,CG1673 + chrX 13401849 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-223 3738 chrX 13401451 13401464 chrX 13401836 13401866 jockey 4 398 6.5 4.5 5.5 0.6 415 chrX 13401451 intergenic CG1673 +,CG12725 - chrX 13401658 intergenic CG12725 -,CG1673 + chrX 13401866 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-223 3739 chrX 13429426 13429481 chrX 13430625 13430680 jockey 19 1199 11.5 13.0 12.2 1.4 1254 chrX 13429426 intergenic not near genes chrX 13430053 intergenic not near genes chrX 13430680 intergenic not near genes chrX_19_13430001 chrX_13430001 RAL-223 3740 chrX 13463601 13463670 chrX 13469228 13469296 mdg3 34 5627 6.0 4.0 5.0 5.7 5695 chrX 13463601 intron Neto + chrX 13466448 intron Neto + chrX 13469296 intron Neto + chrX_34_13465001 chrX_13465001 RAL-223 3741 chrX 13471370 13471393 chrX 13471503 13471526 7 133 4.0 14.5 9.2 0.7 156 chrX 13471370 intron Neto + chrX 13471448 intron Neto + chrX 13471526 intron Neto + chrX_7_13470001 chrX_13470001 RAL-223 3742 chrX 13507286 13507337 chrX 13507417 13507442 23 130 1.5 12.5 7.0 2.9 156 chrX 13507286 intron Neto + chrX 13507364 intron Neto + chrX 13507442 intron Neto + chrX_23_13505001 chrX_13505001 RAL-223 3743 chrX 13734049 13734112 chrX 13734195 13734250 20 143 7.0 8.0 7.5 2.4 201 chrX 13734049 intron g - chrX 13734150 intron g - chrX 13734250 intron g - chrX_20_13730001 chrX_13730001 RAL-223 3744 chrX 13908751 13908771 chrX 13908879 13908888 7 126 9.5 13.0 11.2 0.6 137 chrX 13908751 intron mamo - chrX 13908820 intron mamo - chrX 13908888 intron mamo - chrX_7_13905001 chrX_13905001 RAL-223 3745 chrX 13916666 13916718 chrX 13916793 13916830 13 126 10.0 2.5 6.2 1.8 164 chrX 13916666 intron mamo - chrX 13916748 intron mamo - chrX 13916830 intron mamo - chrX_13_13915001 chrX_13915001 RAL-223 3746 chrX 13934256 13934311 chrX 13934388 13934444 18 133 6.5 14.5 10.5 1.6 188 chrX 13934256 intron mamo - chrX 13934350 intron mamo - chrX 13934444 intron mamo - chrX_18_13930001 chrX_13930001 RAL-223 3747 chrX 13935478 13935492 chrX 13935609 13935620 5 131 15.0 16.0 15.5 0.3 142 chrX 13935478 intron mamo - chrX 13935549 intron mamo - chrX 13935620 intron mamo - chrX_5_13935001 chrX_13935001 RAL-223 3748 chrX 13935494 13935516 chrX 13935601 13935649 9 130 10.0 13.5 11.8 0.7 155 chrX 13935494 intron mamo - chrX 13935572 intron mamo - chrX 13935649 intron mamo - chrX_9_13935001 chrX_13935001 RAL-223 3749 chrX 13937930 13938008 chrX 13941251 13941329 I-element 18 3321 4.5 5.0 4.8 3.1 3399 chrX 13937930 intron mamo - chrX 13939630 intron mamo - chrX 13941329 intron mamo - chrX_18_13935001 chrX_13935001 RAL-223 3750 chrX 13943275 13943297 chrX 13943416 13943438 6 140 0.0 18.0 9.0 0.6 163 chrX 13943275 intron mamo - chrX 13943356 intron mamo - chrX 13943438 intron mamo - chrX_6_13940001 chrX_13940001 RAL-223 3751 chrX 14023074 14023137 chrX 14023217 14023280 10 143 5.5 9.5 7.5 1.2 206 chrX 14023074 intergenic not near genes chrX 14023177 intergenic not near genes chrX 14023280 intergenic not near genes chrX_10_14020001 chrX_14020001 RAL-223 3752 chrX 14030707 14030776 chrX 14035343 14035413 copia 7 4636 4.5 5.5 5.0 1.2 4706 chrX 14030707 intergenic not near genes chrX 14033060 intergenic not near genes chrX 14035413 intergenic not near genes chrX_7_14030001 chrX_14030001 RAL-223 3753 chrX 14104986 14105043 chrX 14114171 14114234 roo 10 9198 8.5 7.0 7.8 1.1 9248 chrX 14104986 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114234 5` UTR CR44657 + chrX_10_14105001 chrX_14105001 RAL-223 3754 chrX 14131429 14131521 chrX 14131567 14131597 29 127 3.0 6.0 4.5 5.3 168 chrX 14131429 intergenic not near genes chrX 14131513 intergenic not near genes chrX 14131597 intergenic not near genes chrX_29_14130001 chrX_14130001 RAL-223 3755 chrX 14157543 14157618 chrX 14163250 14163325 297 11 5703 6.5 4.5 5.5 1.7 5782 chrX 14157543 intergenic not near genes chrX 14160434 intergenic not near genes chrX 14163325 intergenic not near genes chrX_11_14160001 chrX_14160001 RAL-223 3756 chrX 14166230 14166278 chrX 14166640 14166688 14 410 5.5 6.0 5.8 2.1 458 chrX 14166230 intergenic not near genes chrX 14166459 intergenic not near genes chrX 14166688 intergenic not near genes chrX_14_14165001 chrX_14165001 RAL-223 3757 chrX 14209414 14209488 chrX 14209555 14209629 19 141 7.5 5.0 6.2 2.6 215 chrX 14209414 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209629 intron,intron l(1)G0007 +,l(1)G0469 - chrX_19_14205001 chrX_14205001 RAL-223 3758 chrX 14337675 14337736 chrX 14337835 14337896 16 160 6.5 6.0 6.2 2.2 221 chrX 14337675 intron dpr8 + chrX 14337786 intron dpr8 + chrX 14337896 intron dpr8 + chrX_16_14335001 chrX_14335001 RAL-223 3759 chrX 14381364 14381412 chrX 14381568 14381616 15 204 4.0 4.5 4.2 2.9 252 chrX 14381364 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381616 intron dpr8 + chrX_15_14380001 chrX_14380001 RAL-223 3760 chrX 14383915 14383948 chrX 14384049 14384075 9 129 8.5 8.5 8.5 0.9 160 chrX 14383915 intron dpr8 + chrX 14383995 intron dpr8 + chrX 14384075 intron dpr8 + chrX_9_14380001 chrX_14380001 RAL-223 3761 chrX 14401499 14401570 chrX 14401658 14401728 20 157 6.5 3.5 5.0 3.3 229 chrX 14401499 intron dpr8 + chrX 14401614 intron dpr8 + chrX 14401728 intron dpr8 + chrX_20_14400001 chrX_14400001 RAL-223 3762 chrX 14404967 14405022 chrX 14405095 14405150 24 128 8.5 6.5 7.5 2.8 183 chrX 14404967 intron dpr8 + chrX 14405058 intron dpr8 + chrX 14405150 intron dpr8 + chrX_24_14405001 chrX_14405001 RAL-223 3763 chrX 14405227 14405293 chrX 14406045 14406114 6 820 4.0 5.5 4.8 1.0 887 chrX 14405227 intron dpr8 + chrX 14405670 intron dpr8 + chrX 14406114 intron dpr8 + chrX_6_14405001 chrX_14405001 RAL-223 3764 chrX 14411963 14411993 chrX 14412094 14412121 8 128 7.0 16.5 11.8 0.6 158 chrX 14411963 intron dpr8 + chrX 14412042 intron dpr8 + chrX 14412121 intron dpr8 + chrX_8_14410001 chrX_14410001 RAL-223 3765 chrX 14416271 14416314 chrX 14421089 14421132 F-element 8 4818 7.0 8.0 7.5 0.9 4861 chrX 14416271 intron dpr8 + chrX 14418702 intron dpr8 + chrX 14421132 intron dpr8 + chrX_8_14415001 chrX_14415001 RAL-223 3766 chrX 14531316 14531375 chrX 14531455 14531514 16 139 5.0 7.0 6.0 2.3 198 chrX 14531316 intergenic not near genes chrX 14531415 intergenic not near genes chrX 14531514 intergenic not near genes chrX_16_14530001 chrX_14530001 RAL-223 3767 chrX 14561783 14561846 chrX 14562134 14562197 23 351 3.0 7.0 5.0 3.8 414 chrX 14561783 intergenic not near genes chrX 14561990 intergenic not near genes chrX 14562197 intergenic not near genes chrX_23_14560001 chrX_14560001 RAL-223 3768 chrX 14636419 14636475 chrX 14641910 14641966 I-element 25 5490 12.5 11.0 11.8 2.0 5547 chrX 14636419 intron NetA - chrX 14639192 intron NetA - chrX 14641966 intron NetA - chrX_25_14635001 chrX_14635001 RAL-223 3769 chrX 14713992 14714064 chrX 14714124 14714196 17 132 7.0 8.0 7.5 2.0 204 chrX 14713992 intron NetB - chrX 14714094 intron NetB - chrX 14714196 intron NetB - chrX_17_14710001 chrX_14710001 RAL-223 3770 chrX 14726390 14726441 chrX 14726504 14726572 19 126 7.0 3.0 5.0 3.2 182 chrX 14726390 intron NetB - chrX 14726481 intron NetB - chrX 14726572 intron NetB - chrX_19_14725001 chrX_14725001 RAL-223 3771 chrX 14777995 14778048 chrX 14782842 14782894 Doc 19 4847 12.5 7.5 10.0 1.7 4899 chrX 14777995 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782894 intergenic Ag5r2 - chrX_19_14780001 chrX_14780001 RAL-223 3772 chrX 14818729 14818792 chrX 14823968 14824042 copia 24 5250 6.5 8.5 7.5 2.8 5313 chrX 14818729 intron rut - chrX 14821386 intron rut - chrX 14824042 intron rut - chrX_24_14820001 chrX_14820001 RAL-223 3773 chrX 14936818 14936881 chrX 14946125 14946188 roo 24 9307 9.5 14.5 12.0 1.8 9370 chrX 14936818 intron pdgy - chrX 14941503 intron pdgy - chrX 14946188 intron pdgy - chrX_24_14940001 chrX_14940001 RAL-223 3774 chrX 14952385 14952464 chrX 14952603 14952682 25 218 9.5 4.0 6.8 3.2 297 chrX 14952385 intron,3` UTR pdgy -,CR44831 - chrX 14952534 intron,3` UTR pdgy -,CR44831 - chrX 14952682 intron,3` UTR pdgy -,CR44831 - chrX_25_14950001 chrX_14950001 RAL-223 3775 chrX 14981681 14981737 chrX 14981810 14981866 19 128 8.0 7.5 7.8 2.2 185 chrX 14981681 intron eag + chrX 14981774 intron eag + chrX 14981866 intron eag + chrX_19_14980001 chrX_14980001 RAL-223 3776 chrX 14989244 14989276 chrX 14989936 14989968 13 690 7.0 7.0 7.0 1.6 724 chrX 14989244 intron eag + chrX 14989606 intron eag + chrX 14989968 intron eag + chrX_13_14985001 chrX_14985001 RAL-223 3777 chrX 14989278 14989299 chrX 14989934 14989990 8 676 3.0 7.0 5.0 1.3 712 chrX 14989278 intron eag + chrX 14989634 intron eag + chrX 14989990 intron eag + chrX_8_14985001 chrX_14985001 RAL-223 3778 chrX 14991730 14991805 chrX 14991858 14991933 28 126 6.0 8.5 7.2 3.4 203 chrX 14991730 intron eag + chrX 14991832 intron eag + chrX 14991933 intron eag + chrX_28_14990001 chrX_14990001 RAL-223 3779 chrX 15034061 15034077 chrX 15041644 15041660 rover 5 7583 10.5 14.0 12.2 0.4 7599 chrX 15034061 intron,3` UTR hiw -,be + chrX 15037860 intron,intron hiw -,be + chrX 15041660 intron,3` UTR hiw -,be + chrX_5_15035001 chrX_15035001 RAL-223 3780 chrX 15070133 15070306 chrX 15070276 15070452 16 145 0.0 0.0 0.0 16.0 319 chrX 15070133 3` UTR Lsd-2 - chrX 15070292 3` UTR Lsd-2 - chrX 15070452 3` UTR Lsd-2 - chrX_16_15070001 chrX_15070001 RAL-223 3781 chrX 15168694 15168759 chrX 15168833 15168897 16 139 2.5 5.5 4.0 3.2 203 chrX 15168694 intergenic not near genes chrX 15168796 intergenic not near genes chrX 15168897 intergenic not near genes chrX_16_15165001 chrX_15165001 RAL-223 3782 chrX 15200592 15200639 chrX 15200718 15200765 18 126 4.5 3.5 4.0 3.6 173 chrX 15200592 intergenic not near genes chrX 15200678 intergenic not near genes chrX 15200765 intergenic not near genes chrX_18_15200001 chrX_15200001 RAL-223 3783 chrX 15204401 15204468 chrX 15204534 15204591 9 127 7.5 6.0 6.8 1.2 190 chrX 15204401 intergenic not near genes chrX 15204496 intergenic not near genes chrX 15204591 intergenic not near genes chrX_9_15200001 chrX_15200001 RAL-223 3784 chrX 15228448 15228521 chrX 15228744 15228817 23 296 6.5 6.5 6.5 3.1 369 chrX 15228448 intergenic CG9101 - chrX 15228632 intergenic CG9101 - chrX 15228817 3` UTR CG9101 - chrX_23_15225001 chrX_15225001 RAL-223 3785 chrX 15248228 15248269 chrX 15248337 15248395 10 124 5.5 4.5 5.0 1.7 167 chrX 15248228 intergenic not near genes chrX 15248312 intergenic not near genes chrX 15248395 intergenic not near genes chrX_10_15245001 chrX_15245001 RAL-223 3786 chrX 15255908 15255929 chrX 15256105 15256126 12 197 6.5 7.0 6.8 1.5 218 chrX 15255908 intergenic not near genes chrX 15256017 intergenic not near genes chrX 15256126 intergenic not near genes chrX_12_15255001 chrX_15255001 RAL-223 3787 chrX 15265833 15265862 chrX 15265966 15265995 11 133 8.5 6.5 7.5 1.3 162 chrX 15265833 intergenic not near genes chrX 15265914 intergenic not near genes chrX 15265995 intergenic not near genes chrX_11_15265001 chrX_15265001 RAL-223 3788 chrX 15273665 15273724 chrX 15274882 15274924 1360 23 1211 10.5 6.0 8.2 2.5 1259 chrX 15273665 intergenic not near genes chrX 15274294 intergenic not near genes chrX 15274924 intergenic not near genes chrX_23_15270001 chrX_15270001 RAL-223 3789 chrX 15318551 15318583 chrX 15318677 15318709 6 126 10.5 13.5 12.0 0.5 158 chrX 15318551 3` UTR gce + chrX 15318630 3` UTR gce + chrX 15318709 3` UTR gce + chrX_6_15315001 chrX_15315001 RAL-223 3790 chrX 15326688 15326715 chrX 15326936 15326963 I-element 4 248 0.0 6.0 3.0 1.0 275 chrX 15326688 3` UTR Top1 + chrX 15326826 3` UTR Top1 + chrX 15326963 3` UTR Top1 + chrX_4_15325001 chrX_15325001 RAL-223 3791 chrX 15358260 15358337 chrX 15358398 15358475 20 138 4.5 5.0 4.8 3.4 215 chrX 15358260 intron acj6 - chrX 15358368 intron acj6 - chrX 15358475 intron acj6 - chrX_20_15355001 chrX_15355001 RAL-223 3792 chrX 15413009 15413078 chrX 15417361 15417430 Juan 22 4350 7.0 4.5 5.8 3.2 4421 chrX 15413009 intron Cngl - chrX 15415220 intron Cngl - chrX 15417430 intron Cngl - chrX_22_15415001 chrX_15415001 RAL-223 3793 chrX 15435690 15435693 chrX 15436164 15436176 rover 4 480 0.0 15.0 7.5 0.5 486 chrX 15435690 intron Cngl - chrX 15435933 intron Cngl - chrX 15436176 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-223 3794 chrX 15515435 15515471 chrX 15515580 15515616 13 143 11.5 4.0 7.8 1.5 181 chrX 15515435 exon Ac13E - chrX 15515526 exon Ac13E - chrX 15515616 exon Ac13E - chrX_13_15515001 chrX_15515001 RAL-223 3795 chrX 15591186 15591203 chrX 15591312 15591329 10 126 1.5 22.0 11.8 0.8 143 chrX 15591186 intron CG9220 - chrX 15591258 intron CG9220 - chrX 15591329 intron CG9220 - chrX_10_15590001 chrX_15590001 RAL-223 3796 chrX 15633964 15634027 chrX 15634391 15634454 10 426 5.0 4.0 4.5 1.8 490 chrX 15633964 intergenic not near genes chrX 15634209 intergenic not near genes chrX 15634454 intergenic not near genes chrX_10_15630001 chrX_15630001 RAL-223 3797 chrX 15677985 15678060 chrX 15678113 15678187 19 127 4.0 5.5 4.8 3.3 202 chrX 15677985 intergenic CG12708 + chrX 15678086 intergenic CG12708 + chrX 15678187 intergenic CG12708 + chrX_19_15675001 chrX_15675001 RAL-223 3798 chrX 15876869 15876883 chrX 15877020 15877034 9 151 14.5 18.0 16.2 0.5 165 chrX 15876869 3` UTR tay - chrX 15876952 3` UTR tay - chrX 15877034 3` UTR tay - chrX_9_15875001 chrX_15875001 RAL-223 3799 chrX 15898389 15898461 chrX 15898593 15898666 24 203 8.0 6.5 7.2 2.9 277 chrX 15898389 intron shi + chrX 15898528 intron shi + chrX 15898666 intron shi + chrX_24_15895001 chrX_15895001 RAL-223 3800 chrX 16097956 16098023 chrX 16098083 16098150 18 124 11.5 6.0 8.8 1.8 194 chrX 16097956 exon,5` UTR CG42353 -,CG42354 - chrX 16098053 exon,5` UTR CG42353 -,CG42354 - chrX 16098150 exon,5` UTR CG42353 -,CG42354 - chrX_18_16095001 chrX_16095001 RAL-223 3801 chrX 16100507 16100590 chrX 16100636 16100720 14 130 5.5 6.0 5.8 2.1 213 chrX 16100507 intron,intron CG42353 -,CG42354 - chrX 16100614 intron,intron CG42353 -,CG42354 - chrX 16100720 intron,intron CG42353 -,CG42354 - chrX_14_16100001 chrX_16100001 RAL-223 3802 chrX 16131027 16131057 chrX 16131153 16131183 10 125 6.0 7.5 6.8 1.3 156 chrX 16131027 intron disco-r - chrX 16131105 intron disco-r - chrX 16131183 intron disco-r - chrX_10_16130001 chrX_16130001 RAL-223 3803 chrX 16160249 16160303 chrX 16160375 16160429 17 126 7.5 4.0 5.8 2.5 180 chrX 16160249 intergenic not near genes chrX 16160339 intergenic not near genes chrX 16160429 intergenic not near genes chrX_17_16160001 chrX_16160001 RAL-223 3804 chrX 16171579 16171647 chrX 16171713 16171774 5 131 0.0 9.0 4.5 0.9 195 chrX 16171579 intergenic not near genes chrX 16171676 intergenic not near genes chrX 16171774 intergenic not near genes chrX_5_16170001 chrX_16170001 RAL-223 3805 chrX 16222743 16222798 chrX 16231143 16231198 roo 15 8400 1.0 6.5 3.8 3.1 8455 chrX 16222743 intergenic not near genes chrX 16226970 intergenic not near genes chrX 16231198 intergenic not near genes chrX_15_16225001 chrX_16225001 RAL-223 3806 chrX 16265127 16265144 chrX 16265253 16265270 4 126 0.0 0.0 0.0 4.0 143 chrX 16265127 intergenic CG12507 - chrX 16265198 intergenic CG12507 - chrX 16265270 3` UTR CG12507 - chrX_4_16265001 chrX_16265001 RAL-223 3807 chrX 16329356 16329443 chrX 16329503 16329576 14 140 0.0 3.5 1.8 5.0 220 chrX 16329356 exon CG9919 - chrX 16329466 intron CG9919 - chrX 16329576 exon CG9919 - chrX_14_16325001 chrX_16325001 RAL-223 3808 chrX 16340629 16340680 chrX 16349836 16349887 roo 18 9207 10.0 5.5 7.8 2.0 9258 chrX 16340629 intergenic Dsp1 + chrX 16345258 intergenic not near genes chrX 16349887 intergenic sl + chrX_18_16345001 chrX_16345001 RAL-223 3809 chrX 16404317 16404381 chrX 16404463 16404527 20 145 7.5 10.0 8.8 2.0 210 chrX 16404317 intron CG9981 - chrX 16404422 intron CG9981 - chrX 16404527 5` UTR CG9981 - chrX_20_16400001 chrX_16400001 RAL-223 3810 chrX 16408083 16408111 chrX 16408205 16408237 10 124 15.0 14.5 14.8 0.6 154 chrX 16408083 intron CG4301 + chrX 16408160 intron CG4301 + chrX 16408237 intron CG4301 + chrX_10_16405001 chrX_16405001 RAL-223 3811 chrX 16492595 16492666 chrX 16498222 16498293 mdg3 23 5626 7.5 3.5 5.5 3.5 5698 chrX 16492595 intron para - chrX 16495444 intron para - chrX 16498293 exon para - chrX_23_16495001 chrX_16495001 RAL-223 3812 chrX 16511465 16511488 chrX 16511595 16511613 6 127 10.0 12.0 11.0 0.5 148 chrX 16511465 intron para - chrX 16511539 intron para - chrX 16511613 intron para - chrX_6_16510001 chrX_16510001 RAL-223 3813 chrX 16519890 16519961 chrX 16520026 16520097 19 136 0.0 8.0 4.0 3.8 207 chrX 16519890 intron para - chrX 16519994 intron para - chrX 16520097 intron para - chrX_19_16515001 chrX_16515001 RAL-223 3814 chrX 16529355 16529382 chrX 16529524 16529551 9 169 2.5 4.0 3.2 2.1 196 chrX 16529355 intron para - chrX 16529453 intron para - chrX 16529551 intron para - chrX_9_16525001 chrX_16525001 RAL-223 3815 chrX 16552592 16552628 chrX 16552817 16552853 8 223 2.0 11.0 6.5 1.1 261 chrX 16552592 intron Arp2 - chrX 16552722 intron Arp2 - chrX 16552853 intron Arp2 - chrX_8_16550001 chrX_16550001 RAL-223 3816 chrX 16569675 16569688 chrX 16569806 16569819 4 131 10.0 11.5 10.8 0.3 144 chrX 16569675 intron CanA-14F - chrX 16569747 intron CanA-14F - chrX 16569819 intron CanA-14F - chrX_4_16565001 chrX_16565001 RAL-223 3817 chrX 16622240 16622293 chrX 16622368 16622421 12 127 3.5 4.0 3.8 2.5 181 chrX 16622240 intergenic not near genes chrX 16622330 intergenic not near genes chrX 16622421 intergenic not near genes chrX_12_16620001 chrX_16620001 RAL-223 3818 chrX 16707958 16707972 chrX 16708142 16708156 7 184 0.0 7.5 3.8 1.5 198 chrX 16707958 intron CG4678 + chrX 16708057 intron CG4678 + chrX 16708156 intron CG4678 + chrX_7_16705001 chrX_16705001 RAL-223 3819 chrX 16821185 16821253 chrX 16821315 16821383 8 129 7.0 0.0 3.5 1.8 198 chrX 16821185 intron CG4829 + chrX 16821284 intron CG4829 + chrX 16821383 intron CG4829 + chrX_8_16820001 chrX_16820001 RAL-223 3820 chrX 16833157 16833224 chrX 16833292 16833359 16 132 6.0 4.5 5.2 2.6 202 chrX 16833157 intron CG13004 - chrX 16833258 intron CG13004 - chrX 16833359 intron CG13004 - chrX_16_16830001 chrX_16830001 RAL-223 3821 chrX 16869644 16869675 chrX 16869777 16869808 10 133 6.5 14.5 10.5 0.9 164 chrX 16869644 intron CG13003 - chrX 16869726 intron CG13003 - chrX 16869808 intron CG13003 - chrX_10_16865001 chrX_16865001 RAL-223 3822 chrX 16870031 16870088 chrX 16870163 16870221 17 132 5.5 5.0 5.2 2.7 190 chrX 16870031 intron CG13003 - chrX 16870126 intron CG13003 - chrX 16870221 intron CG13003 - chrX_17_16870001 chrX_16870001 RAL-223 3823 chrX 16891315 16891354 chrX 16891452 16891491 9 137 5.5 5.0 5.2 1.5 176 chrX 16891315 intergenic not near genes chrX 16891403 intergenic not near genes chrX 16891491 intergenic not near genes chrX_9_16890001 chrX_16890001 RAL-223 3824 chrX 16906602 16906649 chrX 16906739 16906786 9 137 2.5 5.0 3.8 1.9 184 chrX 16906602 intron CR44754 - chrX 16906694 intron CR44754 - chrX 16906786 intron CR44754 - chrX_9_16905001 chrX_16905001 RAL-223 3825 chrX 16935952 16936023 chrX 16936420 16936491 jockey 5 468 2.5 4.5 3.5 1.1 539 chrX 16935952 intron CG4928 + chrX 16936222 intron CG4928 + chrX 16936491 intron CG4928 + chrX_5_16935001 chrX_16935001 RAL-223 3826 chrX 1053117 1053124 chrX 16983076 16983077 12 15929956 32.5 35.0 33.8 0.3 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_12_9015001 chrX_9015001 RAL-223 3827 chrX 17011922 17011990 chrX 17012050 17012123 23 131 5.0 8.5 6.8 2.9 201 chrX 17011922 intron CG45002 - chrX 17012022 intron CG45002 - chrX 17012123 intron CG45002 - chrX_23_17010001 chrX_17010001 RAL-223 3828 chrX 17037933 17038002 chrX 17038077 17038140 18 142 4.5 4.0 4.2 3.5 207 chrX 17037933 intron CG45002 - chrX 17038036 intron CG45002 - chrX 17038140 intron CG45002 - chrX_18_17035001 chrX_17035001 RAL-223 3829 chrX 17057921 17057963 chrX 17058212 17058254 pogo 9 291 4.0 9.5 6.8 1.2 333 chrX 17057921 intron CG45002 - chrX 17058088 intron CG45002 - chrX 17058254 intron CG45002 - chrX_9_17055001 chrX_17055001 RAL-223 3830 chrX 17063147 17063204 chrX 17063284 17063341 22 137 7.0 7.0 7.0 2.8 194 chrX 17063147 intron CG45002 - chrX 17063244 intron CG45002 - chrX 17063341 intron CG45002 - chrX_22_17060001 chrX_17060001 RAL-223 3831 chrX 17111190 17111252 chrX 17111361 17111424 17 171 5.0 4.5 4.8 2.9 234 chrX 17111190 intron CG5004 + chrX 17111307 intron CG5004 + chrX 17111424 intron CG5004 + chrX_17_17110001 chrX_17110001 RAL-223 3832 chrX 17113549 17113554 chrX 17113682 17113687 5 133 0.0 14.5 7.2 0.6 138 chrX 17113549 intron CG5004 + chrX 17113618 intron CG5004 + chrX 17113687 intron CG5004 + chrX_5_17110001 chrX_17110001 RAL-223 3833 chrX 17120285 17120336 chrX 17120411 17120456 9 126 7.5 7.0 7.2 1.1 171 chrX 17120285 intron CG5004 + chrX 17120370 intron CG5004 + chrX 17120456 intron CG5004 + chrX_9_17120001 chrX_17120001 RAL-223 3834 chrX 17122603 17122667 chrX 17122744 17122807 15 139 1.5 12.0 6.8 1.9 204 chrX 17122603 intron CG5004 + chrX 17122705 intron CG5004 + chrX 17122807 intron CG5004 + chrX_15_17120001 chrX_17120001 RAL-223 3835 chrX 17172186 17172261 chrX 17172307 17172386 17 125 4.0 3.5 3.8 3.5 200 chrX 17172186 intron baz + chrX 17172286 intron baz + chrX 17172386 intron baz + chrX_17_17170001 chrX_17170001 RAL-223 3836 chrX 17179539 17179606 chrX 17179687 17179754 22 147 3.5 7.5 5.5 3.4 215 chrX 17179539 intron baz + chrX 17179646 intron baz + chrX 17179754 intron baz + chrX_22_17175001 chrX_17175001 RAL-223 3837 chrX 17205808 17205857 chrX 17205948 17205994 17 140 5.5 10.5 8.0 1.9 186 chrX 17205808 intergenic not near genes chrX 17205901 intergenic not near genes chrX 17205994 intergenic CG32564 + chrX_17_17205001 chrX_17205001 RAL-223 3838 chrX 17211441 17211510 chrX 17212094 17212163 30 653 32.5 58.5 45.5 0.6 722 chrX 17211441 intergenic not near genes chrX 17211802 intergenic not near genes chrX 17212163 intergenic CG18258 + chrX_30_17210001 chrX_17210001 RAL-223 3839 chrX 17229905 17229965 chrX 17230058 17230118 14 151 6.0 6.5 6.2 1.9 213 chrX 17229905 intergenic CG10597 - chrX 17230012 intergenic CG10597 - chrX 17230118 intergenic CG10597 - chrX_14_17230001 chrX_17230001 RAL-223 3840 chrX 17234219 17234293 chrX 17234363 17234440 11 143 6.5 0.0 3.2 2.6 221 chrX 17234219 intron f + chrX 17234330 intron f + chrX 17234440 intron f + chrX_11_17230001 chrX_17230001 RAL-223 3841 chrX 17237481 17237536 chrX 17237615 17237670 13 134 5.5 8.5 7.0 1.6 189 chrX 17237481 intron f + chrX 17237576 intron f + chrX 17237670 intron f + chrX_13_17235001 chrX_17235001 RAL-223 3842 chrX 17290048 17290086 chrX 17290174 17290212 14 126 7.0 10.5 8.8 1.4 164 chrX 17290048 intron,intron CG5445 +,Fim - chrX 17290130 intron,intron CG5445 +,Fim - chrX 17290212 intron,intron CG5445 +,Fim - chrX_14_17290001 chrX_17290001 RAL-223 3843 chrX 17303559 17303604 chrX 17303685 17303730 12 126 5.0 7.0 6.0 1.7 171 chrX 17303559 intron CG5445 + chrX 17303644 intron CG5445 + chrX 17303730 intron CG5445 + chrX_12_17300001 chrX_17300001 RAL-223 3844 chrX 17316332 17316358 chrX 17316466 17316492 11 134 8.0 0.0 4.0 2.2 160 chrX 17316332 intron B-H2 + chrX 17316412 intron B-H2 + chrX 17316492 intron B-H2 + chrX_11_17315001 chrX_17315001 RAL-223 3845 chrX 17343336 17343400 chrX 17343471 17343535 10 135 0.0 7.0 3.5 2.2 199 chrX 17343336 intergenic not near genes chrX 17343436 intergenic not near genes chrX 17343535 intergenic not near genes chrX_10_17340001 chrX_17340001 RAL-223 3846 chrX 17352551 17352609 chrX 17352695 17352762 19 148 0.5 6.5 3.5 4.2 211 chrX 17352551 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352762 intergenic not near genes chrX_19_17350001 chrX_17350001 RAL-223 3847 chrX 17357499 17357528 chrX 17357643 17357672 5 144 9.0 0.0 4.5 0.9 173 chrX 17357499 intergenic not near genes chrX 17357586 intergenic not near genes chrX 17357672 intergenic not near genes chrX_5_17355001 chrX_17355001 RAL-223 3848 chrX 17431314 17431338 chrX 17431705 17431729 jockey 9 390 13.5 7.5 10.5 0.8 415 chrX 17431314 intron CG12994 - chrX 17431522 intron CG12994 - chrX 17431729 intron CG12994 - chrX_9_17430001 chrX_17430001 RAL-223 3849 chrX 17434387 17434433 chrX 17434530 17434575 8 142 6.5 0.0 3.2 1.9 188 chrX 17434387 intron CG12994 - chrX 17434481 intron CG12994 - chrX 17434575 intron CG12994 - chrX_8_17430001 chrX_17430001 RAL-223 3850 chrX 17479887 17479904 chrX 17480014 17480026 4 126 16.0 10.5 13.2 0.3 139 chrX 17479887 intron CG43658 - chrX 17479956 intron CG43658 - chrX 17480026 intron CG43658 - chrX_4_17475001 chrX_17475001 RAL-223 3851 chrX 17479906 17479936 chrX 17480012 17480063 5 123 14.0 12.0 13.0 0.4 157 chrX 17479906 intron CG43658 - chrX 17479984 intron CG43658 - chrX 17480063 intron CG43658 - chrX_5_17475001 chrX_17475001 RAL-223 3852 chrX 17502300 17502365 chrX 17502430 17502495 29 130 9.0 8.5 8.8 3.0 195 chrX 17502300 intron CG43658 - chrX 17502398 intron CG43658 - chrX 17502495 intron CG43658 - chrX_29_17500001 chrX_17500001 RAL-223 3853 chrX 17546924 17546997 chrX 17547107 17547180 21 183 1.5 9.0 5.2 3.4 256 chrX 17546924 intron CG43658 - chrX 17547052 intron CG43658 - chrX 17547180 intron CG43658 - chrX_21_17545001 chrX_17545001 RAL-223 3854 chrX 17592030 17592102 chrX 17592164 17592236 21 134 6.5 5.0 5.8 3.1 206 chrX 17592030 intron CG12991 + chrX 17592133 intron CG12991 + chrX 17592236 intron CG12991 + chrX_21_17590001 chrX_17590001 RAL-223 3855 chrX 17708781 17708850 chrX 17708908 17708979 22 127 6.0 6.5 6.2 3.1 198 chrX 17708781 intron CG8173 - chrX 17708880 intron CG8173 - chrX 17708979 intron CG8173 - chrX_22_17705001 chrX_17705001 RAL-223 3856 chrX 17741287 17741370 chrX 17741483 17741514 13 192 0.5 4.0 2.2 4.1 227 chrX 17741287 intron CG42684 + chrX 17741400 intron CG42684 + chrX 17741514 intron CG42684 + chrX_13_17740001 chrX_17740001 RAL-223 3857 chrX 17766312 17766337 chrX 17766460 17766485 4 148 8.0 6.5 7.2 0.5 173 chrX 17766312 intergenic not near genes chrX 17766398 intergenic not near genes chrX 17766485 intergenic not near genes chrX_4_17765001 chrX_17765001 RAL-223 3858 chrX 17766339 17766377 chrX 17766455 17766525 15 144 5.0 6.0 5.5 2.3 186 chrX 17766339 intergenic not near genes chrX 17766432 intergenic not near genes chrX 17766525 intergenic not near genes chrX_15_17765001 chrX_17765001 RAL-223 3859 chrX 17792924 17792982 chrX 17796270 17796313 flea 18 3345 6.0 8.5 7.2 2.2 3389 chrX 17792924 intron OdsH + chrX 17794618 intron OdsH + chrX 17796313 intron OdsH + chrX_18_17790001 chrX_17790001 RAL-223 3860 chrX 17911812 17911864 chrX 17911948 17912002 12 138 2.5 4.0 3.2 2.9 190 chrX 17911812 intron CG6847 + chrX 17911907 intron CG6847 + chrX 17912002 intron CG6847 + chrX_12_17910001 chrX_17910001 RAL-223 3861 chrX 17994871 17994876 chrX 17994980 17995006 6 115 4.0 7.0 5.5 0.9 135 chrX 17994871 intron Sh - chrX 17994938 intron Sh - chrX 17995006 intron Sh - chrX_6_17990001 chrX_17990001 RAL-223 3862 chrX 17994881 17994903 chrX 17994976 17995033 8 125 3.5 6.0 4.8 1.4 152 chrX 17994881 intron Sh - chrX 17994957 intron Sh - chrX 17995033 intron Sh - chrX_8_17990001 chrX_17990001 RAL-223 3863 chrX 18130440 18130503 chrX 18130572 18130635 27 132 5.5 4.5 5.0 4.5 195 chrX 18130440 3` UTR ari-1 - chrX 18130538 3` UTR ari-1 - chrX 18130635 3` UTR ari-1 - chrX_27_18130001 chrX_18130001 RAL-223 3864 chrX 18148596 18148625 chrX 18148749 18148778 9 153 1.5 4.5 3.0 2.2 182 chrX 18148596 intergenic not near genes chrX 18148687 intergenic not near genes chrX 18148778 intergenic not near genes chrX_9_18145001 chrX_18145001 RAL-223 3865 chrX 18176992 18177024 chrX 18177135 18177167 9 143 3.5 3.5 3.5 2.0 175 chrX 18176992 intergenic not near genes chrX 18177080 intergenic not near genes chrX 18177167 intergenic Frq2 + chrX_9_18175001 chrX_18175001 RAL-223 3866 chrX 18194025 18194091 chrX 18194610 18194676 BS 23 585 6.5 5.5 6.0 3.3 651 chrX 18194025 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194676 intron Frq2 + chrX_23_18190001 chrX_18190001 RAL-223 3867 chrX 18218009 18218065 chrX 18218176 18218232 25 167 7.0 13.5 10.2 2.2 223 chrX 18218009 intron CG33639 - chrX 18218120 intron CG33639 - chrX 18218232 intron CG33639 - chrX_25_18215001 chrX_18215001 RAL-223 3868 chrX 18256420 18256448 chrX 18256585 18256610 5 164 9.0 0.0 4.5 0.9 190 chrX 18256420 intergenic CR45613 - chrX 18256515 intergenic CR45613 - chrX 18256610 3` UTR CR45613 - chrX_5_18255001 chrX_18255001 RAL-223 3869 chrX 18320428 18320494 chrX 18320622 18320676 10 189 0.0 4.0 2.0 3.3 248 chrX 18320428 intron CG6023 - chrX 18320552 intron CG6023 - chrX 18320676 intron CG6023 - chrX_10_18320001 chrX_18320001 RAL-223 3870 chrX 18427333 18427408 chrX 18427794 18427869 24 460 7.5 3.5 5.5 3.7 536 chrX 18427333 intergenic CG42323 + chrX 18427601 intergenic not near genes chrX 18427869 intergenic not near genes chrX_24_18425001 chrX_18425001 RAL-223 3871 chrX 18429451 18429519 chrX 18434812 18434880 Transpac 16 5360 4.5 9.0 6.8 2.1 5429 chrX 18429451 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434880 intergenic not near genes chrX_16_18430001 chrX_18430001 RAL-223 3872 chrX 18453564 18453612 chrX 18453681 18453738 11 122 8.5 12.0 10.2 1.0 174 chrX 18453564 intron CG32547 - chrX 18453651 intron CG32547 - chrX 18453738 intron CG32547 - chrX_11_18450001 chrX_18450001 RAL-223 3873 chrX 18474011 18474060 chrX 18474147 18474199 8 137 8.0 7.5 7.8 0.9 188 chrX 18474011 intron CG32547 - chrX 18474105 intron CG32547 - chrX 18474199 intron CG32547 - chrX_8_18470001 chrX_18470001 RAL-223 3874 chrX 18479849 18479871 chrX 18479986 18480008 8 136 2.0 10.5 6.2 1.1 159 chrX 18479849 intergenic Hayan -,CR45714 +,CG32547 - chrX 18479928 intergenic Hayan -,CR45714 +,CG32547 - chrX 18480008 3` UTR Hayan - chrX_8_18475001 chrX_18475001 RAL-223 3875 chrX 18489994 18490055 chrX 18490199 18490235 25 202 8.0 5.5 6.8 3.2 241 chrX 18489994 intergenic CG15046 - chrX 18490114 intergenic CG15046 - chrX 18490235 intergenic not near genes chrX_25_18490001 chrX_18490001 RAL-223 3876 chrX 18555336 18555354 chrX 18556907 18556925 transib2 9 1571 8.5 6.0 7.2 1.1 1589 chrX 18555336 intron Bx + chrX 18556130 intron Bx + chrX 18556925 intron Bx + chrX_9_18555001 chrX_18555001 RAL-223 3877 chrX 18555357 18555403 chrX 18556903 18556975 transib2 15 1565 7.0 5.0 6.0 2.1 1618 chrX 18555357 intron Bx + chrX 18556166 intron Bx + chrX 18556975 intron Bx + chrX_15_18555001 chrX_18555001 RAL-223 3878 chrX 18644976 18645040 chrX 18645121 18645188 29 148 8.5 11.5 10.0 2.6 212 chrX 18644976 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645188 intron Rip11 - chrX_29_18645001 chrX_18645001 RAL-223 3879 chrX 18698801 18698876 chrX 18698968 18699043 19 167 8.0 6.5 7.2 2.3 242 chrX 18698801 intergenic not near genes chrX 18698922 intergenic not near genes chrX 18699043 intergenic not near genes chrX_19_18695001 chrX_18695001 RAL-223 3880 chrX 18754285 18754343 chrX 18758002 18758060 297 17 3717 8.5 8.0 8.2 1.8 3775 chrX 18754285 intergenic not near genes chrX 18756172 intergenic not near genes chrX 18758060 intergenic not near genes chrX_17_18755001 chrX_18755001 RAL-223 3881 chrX 18896471 18896546 chrX 18896632 18896646 27 159 3.5 4.5 4.0 5.4 175 chrX 18896471 3` UTR CG7349 + chrX 18896558 3` UTR CG7349 + chrX 18896646 intergenic CG7349 + chrX_27_18895001 chrX_18895001 RAL-223 3882 chrX 18923646 18923671 chrX 18923772 18923797 7 126 4.0 6.0 5.0 1.2 151 chrX 18923646 intergenic not near genes chrX 18923722 intergenic not near genes chrX 18923797 intergenic not near genes chrX_7_18920001 chrX_18920001 RAL-223 3883 chrX 18957024 18957044 chrX 18965730 18965750 roo 5 8706 5.5 0.5 3.0 1.2 8726 chrX 18957024 intron CG43759 + chrX 18961387 intron CG43759 + chrX 18965750 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-223 3884 chrX 18994414 18994465 chrX 18994541 18994593 14 125 14.5 11.0 12.8 1.0 179 chrX 18994414 intron CG43759 + chrX 18994504 intron CG43759 + chrX 18994593 intron CG43759 + chrX_14_18990001 chrX_18990001 RAL-223 3885 chrX 19060366 19060427 chrX 19065200 19065261 Doc 21 4834 9.0 9.0 9.0 2.1 4895 chrX 19060366 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065261 intron CG14190 + chrX_21_19060001 chrX_19060001 RAL-223 3886 chrX 19073635 19073697 chrX 19073772 19073834 30 136 11.0 7.0 9.0 3.0 199 chrX 19073635 intergenic not near genes chrX 19073734 intergenic not near genes chrX 19073834 intergenic not near genes chrX_30_19070001 chrX_19070001 RAL-223 3887 chrX 19080283 19080348 chrX 19080439 19080504 15 156 9.5 5.5 7.5 1.8 221 chrX 19080283 intergenic not near genes chrX 19080394 intergenic not near genes chrX 19080504 intergenic not near genes chrX_15_19080001 chrX_19080001 RAL-223 3888 chrX 19098729 19098780 chrX 19098857 19098908 18 128 0.0 6.0 3.0 4.5 179 chrX 19098729 intergenic not near genes chrX 19098818 intergenic not near genes chrX 19098908 intergenic not near genes chrX_18_19095001 chrX_19095001 RAL-223 3889 chrX 19109085 19109135 chrX 19109297 19109369 7 226 0.0 6.0 3.0 1.8 284 chrX 19109085 intergenic not near genes chrX 19109227 intergenic not near genes chrX 19109369 intergenic not near genes chrX_7_19105001 chrX_19105001 RAL-223 3890 chrX 19110715 19110779 chrX 19110980 19111032 19 272 3.0 6.0 4.5 3.5 317 chrX 19110715 intergenic not near genes chrX 19110874 intergenic not near genes chrX 19111032 intergenic not near genes chrX_19_19110001 chrX_19110001 RAL-223 3891 chrX 19124414 19124462 chrX 19124551 19124601 11 139 6.5 7.0 6.8 1.4 187 chrX 19124414 intergenic CG15882 - chrX 19124508 intergenic CG15882 -,tgy - chrX 19124601 intergenic CG15882 -,tgy - chrX_11_19120001 chrX_19120001 RAL-223 3892 chrX 19136515 19136567 chrX 19143485 19143537 412 15 6969 4.5 10.5 7.5 1.8 7022 chrX 19136515 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143537 3` UTR RhoGAP18B - chrX_15_19140001 chrX_19140001 RAL-223 3893 chrX 19181972 19182047 chrX 19182134 19182208 14 162 3.5 5.5 4.5 2.5 236 chrX 19181972 3` UTR CG7453 + chrX 19182090 intergenic CG7453 + chrX 19182208 intergenic CG7453 + chrX_14_19180001 chrX_19180001 RAL-223 3894 chrX 19242843 19242845 chrX 19243193 19243195 4 350 0.0 0.0 0.0 4.0 352 chrX 19242843 intergenic not near genes chrX 19243019 intergenic not near genes chrX 19243195 intergenic CG7889 + chrX_4_19240001 chrX_19240001 RAL-223 3895 chrX 19285045 19285114 chrX 19285331 19285394 25 285 7.5 8.5 8.0 2.8 349 chrX 19285045 intron CG8034 - chrX 19285220 intron CG8034 - chrX 19285394 intron CG8034 - chrX_25_19285001 chrX_19285001 RAL-223 3896 chrX 19320177 19320244 chrX 19320315 19320382 27 136 7.0 6.0 6.5 3.6 205 chrX 19320177 intron out - chrX 19320280 intron out - chrX 19320382 intron out - chrX_27_19320001 chrX_19320001 RAL-223 3897 chrX 19330422 19330427 chrX 19330592 19330597 4 170 7.0 7.0 7.0 0.5 175 chrX 19330422 intron nAChRalpha7 - chrX 19330510 intron nAChRalpha7 - chrX 19330597 intron nAChRalpha7 - chrX_4_19330001 chrX_19330001 RAL-223 3898 chrX 19339730 19339753 chrX 19339856 19339879 5 126 0.0 2.0 1.0 2.5 149 chrX 19339730 intron nAChRalpha7 - chrX 19339804 intron nAChRalpha7 - chrX 19339879 intron nAChRalpha7 - chrX_5_19335001 chrX_19335001 RAL-223 3899 chrX 19356950 19357022 chrX 19358441 19358531 NOF 20 1502 4.5 0.0 2.2 6.2 1581 chrX 19356950 intron kek5 + chrX 19357740 intron kek5 + chrX 19358531 intron kek5 + chrX_20_19355001 chrX_19355001 RAL-223 3900 chrX 19380112 19380176 chrX 19380403 19380467 pogo 19 291 9.5 7.5 8.5 2.0 355 chrX 19380112 intron kek5 + chrX 19380290 intron kek5 + chrX 19380467 intron kek5 + chrX_19_19380001 chrX_19380001 RAL-223 3901 chrX 16983076 16983077 chrX 19404963 19404964 4 2421887 27.5 20.5 24.0 0.2 2421888 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404964 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-223 3902 chrX 19437233 19437280 chrX 19444802 19444849 Idefix 4 7566 6.0 3.5 4.8 0.7 7616 chrX 19437233 intron kek5 + chrX 19441041 intron kek5 + chrX 19444849 intron kek5 + chrX_4_19440001 chrX_19440001 RAL-223 3903 chrX 19457621 19457665 chrX 19457754 19457785 15 127 12.0 7.0 9.5 1.4 164 chrX 19457621 intron kek5 + chrX 19457703 intron kek5 + chrX 19457785 intron kek5 + chrX_15_19455001 chrX_19455001 RAL-223 3904 chrX 19471978 19472031 chrX 19472110 19472141 18 130 11.5 0.0 5.8 2.6 163 chrX 19471978 intergenic kek5 + chrX 19472060 intergenic kek5 + chrX 19472141 intergenic kek5 + chrX_18_19470001 chrX_19470001 RAL-223 3905 chrX 19472041 19472148 chrX 19472690 19472768 jockey 30 623 0.0 10.0 5.0 5.0 727 chrX 19472041 intergenic kek5 + chrX 19472404 intergenic kek5 + chrX 19472768 intergenic not near genes chrX_30_19470001 chrX_19470001 RAL-223 3906 chrX 19530028 19530102 chrX 19530158 19530232 27 130 5.0 7.0 6.0 3.9 204 chrX 19530028 3` UTR CoRest + chrX 19530130 3` UTR CoRest + chrX 19530232 3` UTR CoRest + chrX_27_19530001 chrX_19530001 RAL-223 3907 chrX 19531897 19531905 chrX 19532040 19532048 8 143 9.0 9.0 9.0 0.8 151 chrX 19531897 3` UTR CG32532 - chrX 19531972 3` UTR CG32532 - chrX 19532048 3` UTR CG32532 - chrX_8_19530001 chrX_19530001 RAL-223 3908 chrX 19531906 19531955 chrX 19532038 19532098 17 141 8.0 8.5 8.2 1.8 192 chrX 19531906 3` UTR CG32532 - chrX 19532002 3` UTR CG32532 - chrX 19532098 3` UTR CG32532 - chrX_17_19530001 chrX_19530001 RAL-223 3909 chrX 19541387 19541447 chrX 19541517 19541577 19 130 3.5 7.5 5.5 2.9 190 chrX 19541387 intron CG32532 - chrX 19541482 intron CG32532 - chrX 19541577 intron CG32532 - chrX_19_19540001 chrX_19540001 RAL-223 3910 chrX 19553454 19553493 chrX 19553580 19553619 7 126 3.5 7.5 5.5 1.1 165 chrX 19553454 intergenic not near genes chrX 19553536 intergenic not near genes chrX 19553619 intergenic not near genes chrX_7_19550001 chrX_19550001 RAL-223 3911 chrX 19593901 19593977 chrX 19594036 19594112 21 135 3.5 5.0 4.2 4.0 211 chrX 19593901 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594112 exon CG14205 + chrX_21_19590001 chrX_19590001 RAL-223 3912 chrX 19668914 19668924 chrX 19669144 19669154 4 230 16.0 16.5 16.2 0.2 240 chrX 19668914 intron Zw + chrX 19669034 intron Zw + chrX 19669154 intron Zw + chrX_4_19665001 chrX_19665001 RAL-223 3913 chrX 19689367 19689435 chrX 19689495 19689563 24 128 7.5 5.0 6.2 3.3 196 chrX 19689367 intergenic Mer -,CG14227 - chrX 19689465 intergenic Mer - chrX 19689563 intergenic Mer - chrX_24_19685001 chrX_19685001 RAL-223 3914 chrX 19693709 19693741 chrX 19693844 19693876 20 135 8.5 0.0 4.2 3.8 167 chrX 19693709 intergenic Mer -,CG14229 - chrX 19693792 intergenic CG14229 -,Mer - chrX 19693876 intergenic CG14229 -,Mer - chrX_20_19690001 chrX_19690001 RAL-223 3915 chrX 19710024 19710093 chrX 19711860 19711929 S-element 26 1836 6.5 8.0 7.2 3.2 1905 chrX 19710024 intron meso18E - chrX 19710976 intron meso18E - chrX 19711929 intron meso18E - chrX_26_19710001 chrX_19710001 RAL-223 3916 chrX 19744622 19744646 chrX 19744752 19744775 6 124 21.0 26.5 23.8 0.2 153 chrX 19744622 5` UTR,exon CG33932 +,Rpp20 + chrX 19744698 intron,intron CG33932 +,Rpp20 + chrX 19744775 5` UTR,exon CG33932 +,Rpp20 + chrX_6_19740001 chrX_19740001 RAL-223 3917 chrX 19754537 19754579 chrX 19754649 19754706 14 122 12.5 11.0 11.8 1.1 169 chrX 19754537 intron Pmp70 + chrX 19754622 intron Pmp70 + chrX 19754706 intron Pmp70 + chrX_14_19750001 chrX_19750001 RAL-223 3918 chrX 19762544 19762571 chrX 19762674 19762701 9 130 13.5 3.5 8.5 0.9 157 chrX 19762544 5` UTR CG12702 - chrX 19762622 5` UTR CG12702 - chrX 19762701 5` UTR CG12702 - chrX_9_19760001 chrX_19760001 RAL-223 3919 chrX 19791214 19791282 chrX 19791358 19791426 28 144 4.5 3.5 4.0 5.6 212 chrX 19791214 intergenic not near genes chrX 19791320 intergenic not near genes chrX 19791426 intergenic not near genes chrX_28_19790001 chrX_19790001 RAL-223 3920 chrX 19797305 19797339 chrX 19804668 19804702 Stalker4 9 7363 7.0 7.0 7.0 1.1 7397 chrX 19797305 intergenic not near genes chrX 19801004 intergenic not near genes chrX 19804702 intergenic not near genes chrX_9_19800001 chrX_19800001 RAL-223 3921 chrX 19881412 19881478 chrX 19881543 19881609 19 131 5.5 6.0 5.8 2.8 197 chrX 19881412 intron Hers + chrX 19881510 intron Hers + chrX 19881609 intron Hers + chrX_19_19880001 chrX_19880001 RAL-223 3922 chrX 19897342 19897404 chrX 19897469 19897531 15 126 7.5 1.0 4.2 2.9 189 chrX 19897342 intron Hers + chrX 19897436 intron Hers + chrX 19897531 intron Hers + chrX_15_19895001 chrX_19895001 RAL-223 3923 chrX 19978115 19978155 chrX 19978253 19978293 18 136 11.5 11.0 11.2 1.5 178 chrX 19978115 intergenic not near genes chrX 19978204 intergenic not near genes chrX 19978293 intergenic not near genes chrX_18_19975001 chrX_19975001 RAL-223 3924 chrX 19983847 19983896 chrX 19983977 19984026 8 130 1.5 5.5 3.5 1.8 179 chrX 19983847 intergenic not near genes chrX 19983936 intergenic not near genes chrX 19984026 intergenic not near genes chrX_8_19980001 chrX_19980001 RAL-223 3925 chrX 19992366 19992424 chrX 19992492 19992543 14 123 5.5 8.0 6.8 1.8 177 chrX 19992366 intergenic not near genes chrX 19992454 intergenic not near genes chrX 19992543 intergenic not near genes chrX_14_19990001 chrX_19990001 RAL-223 3926 chrX 19993420 19993446 chrX 19993550 19993576 12 130 4.5 5.0 4.8 2.1 156 chrX 19993420 intergenic not near genes chrX 19993498 intergenic not near genes chrX 19993576 intergenic not near genes chrX_12_19990001 chrX_19990001 RAL-223 3927 chrX 20041486 20041559 chrX 20041616 20041689 17 130 6.5 9.0 7.8 1.9 203 chrX 20041486 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041689 intron Dop2R - chrX_17_20040001 chrX_20040001 RAL-223 3928 chrX 20069220 20069279 chrX 20069403 20069462 22 181 8.0 8.5 8.2 2.4 242 chrX 20069220 intergenic not near genes chrX 20069341 intergenic not near genes chrX 20069462 intergenic not near genes chrX_22_20065001 chrX_20065001 RAL-223 3929 chrX 20090551 20090602 chrX 20090680 20090711 13 120 6.0 9.0 7.5 1.5 160 chrX 20090551 intergenic CR45628 + chrX 20090631 intergenic CR45628 + chrX 20090711 5` UTR CR45628 + chrX_13_20090001 chrX_20090001 RAL-223 3930 chrX 20125360 20125398 chrX 20125492 20125530 6 132 2.5 7.5 5.0 1.0 170 chrX 20125360 intergenic CG34331 + chrX 20125445 intergenic CG34331 + chrX 20125530 intergenic CG34331 + chrX_6_20125001 chrX_20125001 RAL-223 3931 chrX 20132259 20132291 chrX 20132392 20132424 18 132 10.5 8.0 9.2 1.8 165 chrX 20132259 intergenic not near genes chrX 20132342 intergenic not near genes chrX 20132424 intergenic not near genes chrX_18_20130001 chrX_20130001 RAL-223 3932 chrX 20144281 20144312 chrX 20144411 20144442 19 129 6.0 6.0 6.0 2.7 161 chrX 20144281 intergenic not near genes chrX 20144362 intergenic not near genes chrX 20144442 intergenic not near genes chrX_19_20140001 chrX_20140001 RAL-223 3933 chrX 20144444 20144453 chrX 21085289 21085298 INE-1 6 940845 6.0 27.5 16.8 0.3 940854 chrX 20144444 intergenic not near genes chrX 20614871 intron RunxA - chrX 21085298 intergenic not near genes chrX_6_20610001 chrX_20610001 RAL-223 3934 chrX 20269882 20269949 chrX 20270014 20270081 16 131 5.5 7.0 6.2 2.2 199 chrX 20269882 intergenic Inx6 - chrX 20269982 intergenic Inx6 - chrX 20270081 intergenic Inx6 - chrX_16_20265001 chrX_20265001 RAL-223 3935 chrX 20271452 20271487 chrX 20271594 20271629 7 142 14.0 0.0 7.0 0.9 177 chrX 20271452 intergenic not near genes chrX 20271540 intergenic not near genes chrX 20271629 intergenic not near genes chrX_7_20270001 chrX_20270001 RAL-223 3936 chrX 20279706 20279732 chrX 20279835 20279861 10 128 10.5 0.0 5.2 1.6 155 chrX 20279706 intergenic not near genes chrX 20279784 intergenic not near genes chrX 20279861 intergenic not near genes chrX_10_20275001 chrX_20275001 RAL-223 3937 chrX 20312834 20312911 chrX 20312961 20313039 31 128 7.0 7.0 7.0 3.9 205 chrX 20312834 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20313039 intron CG1504 - chrX_31_20310001 chrX_20310001 RAL-223 3938 chrX 20320250 20320299 chrX 20320377 20320426 20 126 15.0 4.0 9.5 1.9 176 chrX 20320250 intron CG1504 - chrX 20320338 intron CG1504 - chrX 20320426 intron CG1504 - chrX_20_20320001 chrX_20320001 RAL-223 3939 chrX 20374053 20374127 chrX 20374179 20374253 12 126 2.0 7.0 4.5 2.2 200 chrX 20374053 intergenic not near genes chrX 20374153 intergenic not near genes chrX 20374253 intergenic not near genes chrX_12_20370001 chrX_20370001 RAL-223 3940 chrX 20377277 20377342 chrX 20378794 20378829 hobo 8 1512 6.0 8.0 7.0 1.0 1552 chrX 20377277 intergenic not near genes chrX 20378053 intergenic not near genes chrX 20378829 intergenic not near genes chrX_8_20375001 chrX_20375001 RAL-223 3941 chrX 20383268 20383335 chrX 20383442 20383509 20 172 7.0 6.5 6.8 2.6 241 chrX 20383268 intergenic not near genes chrX 20383388 intergenic not near genes chrX 20383509 intergenic not near genes chrX_20_20380001 chrX_20380001 RAL-223 3942 chrX 20383828 20383889 chrX 20383958 20384019 20 128 5.0 6.0 5.5 3.1 191 chrX 20383828 intergenic not near genes chrX 20383924 intergenic not near genes chrX 20384019 intergenic not near genes chrX_20_20380001 chrX_20380001 RAL-223 3943 chrX 20384197 20384225 chrX 20384359 20384387 15 162 0.0 14.5 7.2 1.8 190 chrX 20384197 intergenic not near genes chrX 20384292 intergenic not near genes chrX 20384387 intergenic not near genes chrX_15_20380001 chrX_20380001 RAL-223 3944 chrX 20387027 20387069 chrX 20387154 20387196 10 126 12.5 13.0 12.8 0.7 169 chrX 20387027 intergenic not near genes chrX 20387112 intergenic not near genes chrX 20387196 intergenic not near genes chrX_10_20385001 chrX_20385001 RAL-223 3945 chrX 20415025 20415083 chrX 20415156 20415223 10 138 0.0 0.0 0.0 10.0 198 chrX 20415025 intergenic not near genes chrX 20415124 intergenic not near genes chrX 20415223 intergenic not near genes chrX_10_20415001 chrX_20415001 RAL-223 3946 chrX 20427101 20427137 chrX 20427278 20427314 12 177 63.0 51.0 57.0 0.2 213 chrX 20427101 intergenic CG15456 -,CG11710 - chrX 20427208 intergenic CG15456 -,CG11710 - chrX 20427314 intergenic CG11710 -,CG15456 - chrX_12_20425001 chrX_20425001 RAL-223 3947 chrX 20426177 20426230 chrX 20428321 20428405 34 2154 77.0 68.0 72.5 0.5 2228 chrX 20426177 exon cactin + chrX 20427291 intergenic CG11710 -,CG15456 - chrX 20428405 exon CG11710 - chrX_34_20425001 chrX_20425001 RAL-223 3948 chrX 20443172 20443198 chrX 20443298 20443324 6 126 8.0 10.5 9.2 0.6 152 chrX 20443172 exon CG1695 + chrX 20443248 intron CG1695 + chrX 20443324 intron CG1695 + chrX_6_20440001 chrX_20440001 RAL-223 3949 chrX 20467967 20468032 chrX 20468106 20468164 11 138 6.5 0.0 3.2 2.6 197 chrX 20467967 intron GstT3 + chrX 20468066 intron GstT3 + chrX 20468164 intron GstT3 + chrX_11_20465001 chrX_20465001 RAL-223 3950 chrX 20493874 20493925 chrX 20494083 20494136 4 210 0.0 6.5 3.2 1.0 262 chrX 20493874 intron RhoGAP19D - chrX 20494005 intron RhoGAP19D - chrX 20494136 intron RhoGAP19D - chrX_4_20490001 chrX_20490001 RAL-223 3951 chrX 20503048 20503111 chrX 20503182 20503245 14 134 5.5 7.0 6.2 1.9 197 chrX 20503048 intron RhoGAP19D - chrX 20503146 intron RhoGAP19D - chrX 20503245 intron RhoGAP19D - chrX_14_20500001 chrX_20500001 RAL-223 3952 chrX 20528557 20528625 chrX 20528955 20529023 22 398 5.5 8.0 6.8 2.8 466 chrX 20528557 intergenic not near genes chrX 20528790 intergenic not near genes chrX 20529023 intergenic not near genes chrX_22_20525001 chrX_20525001 RAL-223 3953 chrX 20559099 20559161 chrX 20559237 20559299 24 138 0.0 11.5 5.8 3.5 200 chrX 20559099 intron RunxB + chrX 20559199 intron RunxB + chrX 20559299 intron RunxB + chrX_24_20555001 chrX_20555001 RAL-223 3954 chrX 20594267 20594275 chrX 20594403 20594411 4 136 20.5 9.0 14.8 0.3 144 chrX 20594267 intron RunxA - chrX 20594339 intron RunxA - chrX 20594411 intron RunxA - chrX_4_20590001 chrX_20590001 RAL-223 3955 chrX 20594279 20594330 chrX 20594399 20594440 15 131 9.0 9.0 9.0 1.5 161 chrX 20594279 intron RunxA - chrX 20594360 intron RunxA - chrX 20594440 intron RunxA - chrX_15_20590001 chrX_20590001 RAL-223 3956 chrX 20635385 20635447 chrX 20635601 20635663 21 215 4.0 4.0 4.0 4.2 278 chrX 20635385 intergenic not near genes chrX 20635524 intergenic not near genes chrX 20635663 intergenic not near genes chrX_21_20635001 chrX_20635001 RAL-223 3957 chrX 20708347 20708375 chrX 20708473 20708502 6 125 10.5 9.0 9.8 0.6 155 chrX 20708347 intergenic not near genes chrX 20708424 intergenic not near genes chrX 20708502 intergenic not near genes chrX_6_20705001 chrX_20705001 RAL-223 3958 chrX 20710373 20710421 chrX 20710499 20710549 12 128 9.5 0.0 4.8 2.1 176 chrX 20710373 intergenic not near genes chrX 20710461 intergenic not near genes chrX 20710549 intergenic not near genes chrX_12_20710001 chrX_20710001 RAL-223 3959 chrX 20776798 20776832 chrX 20776991 20777025 17 193 8.5 13.5 11.0 1.4 227 chrX 20776798 intron shakB - chrX 20776912 intron shakB - chrX 20777025 intron shakB - chrX_17_20775001 chrX_20775001 RAL-223 3960 chrX 20780178 20780237 chrX 20780453 20780512 20 274 6.0 4.0 5.0 3.3 334 chrX 20780178 intron,3` UTR shakB -,CG32507 - chrX 20780345 intron,3` UTR shakB -,CG32507 - chrX 20780512 intron,3` UTR shakB -,CG32507 - chrX_20_20780001 chrX_20780001 RAL-223 3961 chrX 20791508 20791585 chrX 20791658 20791735 16 149 4.0 5.0 4.5 2.9 227 chrX 20791508 intron shakB - chrX 20791622 intron shakB - chrX 20791735 intron shakB - chrX_16_20790001 chrX_20790001 RAL-223 3962 chrX 20810674 20810744 chrX 20810801 20810872 11 127 8.5 7.0 7.8 1.2 198 chrX 20810674 intron shakB - chrX 20810773 intron shakB - chrX 20810872 intron shakB - chrX_11_20810001 chrX_20810001 RAL-223 3963 chrX 20836678 20836756 chrX 20844326 20844392 roo 7 7649 4.0 0.0 2.0 2.3 7714 chrX 20836678 intron shakB - chrX 20840535 intron shakB - chrX 20844392 intron shakB - chrX_7_20840001 chrX_20840001 RAL-223 3964 chrX 20915002 20915069 chrX 20915223 20915290 21 221 3.5 2.5 3.0 5.2 288 chrX 20915002 intron shakB - chrX 20915146 intron shakB - chrX 20915290 intron shakB - chrX_21_20915001 chrX_20915001 RAL-223 3965 chrX 20940677 20940689 chrX 20942196 20942208 hobo 7 1519 14.5 4.5 9.5 0.7 1531 chrX 20940677 intergenic not near genes chrX 20941442 intergenic not near genes chrX 20942208 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-223 3966 chrX 20940695 20940728 chrX 20942194 20942234 hobo 13 1516 7.5 4.0 5.8 1.9 1539 chrX 20940695 intergenic not near genes chrX 20941464 intergenic not near genes chrX 20942234 intergenic not near genes chrX_13_20940001 chrX_20940001 RAL-223 3967 chrX 20956951 20957008 chrX 20962443 20962500 I-element 11 5492 1.0 3.0 2.0 3.7 5549 chrX 20956951 intergenic not near genes chrX 20959726 intergenic not near genes chrX 20962500 intergenic Ser6 - chrX_11_20955001 chrX_20955001 RAL-223 3968 chrX 21029102 21029178 chrX 21029364 21029384 13 255 5.0 8.0 6.5 1.7 282 chrX 21029102 3` UTR CG1529 - chrX 21029243 3` UTR CG1529 - chrX 21029384 3` UTR CG1529 - chrX_13_21025001 chrX_21025001 RAL-223 3969 chrX 21032262 21032282 chrX 21032404 21032424 8 142 4.0 13.0 8.5 0.8 162 chrX 21032262 intergenic CG1529 - chrX 21032343 intergenic CG1529 - chrX 21032424 intergenic CG1529 - chrX_8_21030001 chrX_21030001 RAL-223 3970 chrX 21049206 21049218 chrX 21049336 21049348 5 130 6.0 4.5 5.2 0.8 142 chrX 21049206 intergenic Cbs + chrX 21049277 intergenic Cbs + chrX 21049348 intergenic Cbs + chrX_5_21045001 chrX_21045001 RAL-223 3971 chrX 21049712 21049754 chrX 21049843 21049888 12 133 5.5 13.0 9.2 1.2 176 chrX 21049712 intergenic CG1518 - chrX 21049800 intergenic CG1518 - chrX 21049888 3` UTR CG1518 - chrX_12_21045001 chrX_21045001 RAL-223 3972 chrX 21055653 21055714 chrX 21055779 21055840 21 126 9.0 5.5 7.2 2.6 187 chrX 21055653 intron bves + chrX 21055746 intron bves + chrX 21055840 intron bves + chrX_21_21055001 chrX_21055001 RAL-223 3973 chrX 21061810 21061891 chrX 21062349 21062425 roo 16 536 3.5 3.5 3.5 3.6 615 chrX 21061810 intron bves + chrX 21062118 intron bves + chrX 21062425 intron,3` UTR bves +,CG32512 - chrX_16_21060001 chrX_21060001 RAL-223 3974 chrX 21076282 21076334 chrX 21076411 21076463 21 127 13.5 0.5 7.0 2.6 181 chrX 21076282 intron bves + chrX 21076372 intron bves + chrX 21076463 intron bves + chrX_21_21075001 chrX_21075001 RAL-223 3975 chrX 21077547 21077630 chrX 21077686 21077768 24 137 3.0 6.5 4.8 4.1 221 chrX 21077547 intron bves + chrX 21077658 intron bves + chrX 21077768 intron bves + chrX_24_21075001 chrX_21075001 RAL-223 3976 chrX 21078720 21078777 chrX 21078848 21078898 15 127 6.0 0.0 3.0 3.8 178 chrX 21078720 intron bves + chrX 21078809 intron bves + chrX 21078898 intron bves + chrX_15_21075001 chrX_21075001 RAL-223 3977 chrX 21084508 21084577 chrX 21085073 21085142 28 564 4.5 6.5 5.5 4.3 634 chrX 21084508 intergenic not near genes chrX 21084825 intergenic not near genes chrX 21085142 intergenic not near genes chrX_28_21080001 chrX_21080001 RAL-223 3978 chrX 20144571 20144586 chrX 21085234 21085249 8 940663 20.0 27.5 23.8 0.3 940678 chrX 20144571 intergenic not near genes chrX 20614910 intron RunxA - chrX 21085249 intergenic not near genes chrX_8_20610001 chrX_20610001 RAL-223 3979 chrX 21086083 21086158 chrX 21087159 21087209 jockey 8 1054 3.0 1.0 2.0 2.7 1126 chrX 21086083 intergenic not near genes chrX 21086646 intergenic not near genes chrX 21087209 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-223 3980 chrX 21087993 21088054 chrX 21088175 21088236 31 182 11.5 6.5 9.0 3.1 243 chrX 21087993 intergenic not near genes chrX 21088114 intergenic not near genes chrX 21088236 intergenic not near genes chrX_31_21085001 chrX_21085001 RAL-223 3981 chrX 21166101 21166166 chrX 21166229 21166297 21 128 2.0 5.0 3.5 4.7 196 chrX 21166101 intergenic not near genes chrX 21166199 intergenic not near genes chrX 21166297 intergenic not near genes chrX_21_21165001 chrX_21165001 RAL-223 3982 chrX 21185946 21186009 chrX 21186083 21186146 29 136 5.0 0.0 2.5 8.3 200 chrX 21185946 intergenic not near genes chrX 21186046 intergenic not near genes chrX 21186146 intergenic not near genes chrX_29_21185001 chrX_21185001 RAL-223 3983 chrX 21222610 21222678 chrX 21222737 21222805 9 127 4.5 6.5 5.5 1.4 195 chrX 21222610 intron CG32521 - chrX 21222708 intron CG32521 - chrX 21222805 intron CG32521 - chrX_9_21220001 chrX_21220001 RAL-223 3984 chrX 21292482 21292527 chrX 21292662 21292707 14 180 11.0 8.5 9.8 1.3 225 chrX 21292482 3` UTR CG1718 - chrX 21292594 3` UTR CG1718 - chrX 21292707 3` UTR CG1718 - chrX_14_21290001 chrX_21290001 RAL-223 3985 chrX 21308822 21308874 chrX 21308978 21309050 14 169 5.5 0.0 2.8 3.7 228 chrX 21308822 exon CG1801 - chrX 21308936 intron CG1801 - chrX 21309050 intron CG1801 - chrX_14_21305001 chrX_21305001 RAL-223 3986 chrX 21328067 21328146 chrX 21328228 21328308 18 161 4.0 4.0 4.0 3.6 241 chrX 21328067 3` UTR CG1486 + chrX 21328188 intergenic CG1486 +,tty - chrX 21328308 intergenic CG1486 +,tty - chrX_18_21325001 chrX_21325001 RAL-223 3987 chrX 21345069 21345142 chrX 21345200 21345273 37 131 4.0 4.0 4.0 7.4 204 chrX 21345069 3` UTR fliI + chrX 21345171 intergenic fliI +,dod + chrX 21345273 intergenic dod +,fliI + chrX_37_21345001 chrX_21345001 RAL-223 3988 chrX 21410603 21410666 chrX 21410732 21410795 16 129 4.5 7.0 5.8 2.4 192 chrX 21410603 intergenic CR45003 - chrX 21410699 intergenic CR45003 - chrX 21410795 intergenic CR45003 - chrX_16_21410001 chrX_21410001 RAL-223 3989 chrX 21428293 21428365 chrX 21428533 21428605 22 240 4.5 5.5 5.0 3.7 312 chrX 21428293 intron CG42343 - chrX 21428449 intron CG42343 - chrX 21428605 intron CG42343 - chrX_22_21425001 chrX_21425001 RAL-223 3990 chrX 21429822 21429834 chrX 21429962 21429974 INE-1 6 140 0.5 12.0 6.2 0.8 152 chrX 21429822 intron CG42343 - chrX 21429898 intron CG42343 - chrX 21429974 intron CG42343 - chrX_6_21425001 chrX_21425001 RAL-223 3991 chrX 21439487 21439569 chrX 21439618 21439700 24 131 6.0 6.5 6.2 3.3 213 chrX 21439487 intron CG42343 - chrX 21439594 intron CG42343 - chrX 21439700 intron CG42343 - chrX_24_21435001 chrX_21435001 RAL-223 3992 chrX 21454819 21454871 chrX 21454953 21455005 8 134 6.5 7.5 7.0 1.0 186 chrX 21454819 intron CG42343 - chrX 21454912 intron CG42343 - chrX 21455005 intron CG42343 - chrX_8_21450001 chrX_21450001 RAL-223 3993 chrX 21455199 21455242 chrX 21455436 21455479 17 236 2.5 10.5 6.5 2.3 280 chrX 21455199 intron CG42343 - chrX 21455339 intron CG42343 - chrX 21455479 intron CG42343 - chrX_17_21455001 chrX_21455001 RAL-223 3994 chrX 21458652 21458715 chrX 21464138 21464201 Ivk 22 5486 7.5 8.0 7.8 2.5 5549 chrX 21458652 intergenic not near genes chrX 21461426 intergenic not near genes chrX 21464201 intergenic not near genes chrX_22_21460001 chrX_21460001 RAL-223 3995 chrX 21500512 21500589 chrX 21500763 21500840 8 250 1.0 6.0 3.5 1.8 328 chrX 21500512 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500840 intron CR45082 - chrX_8_21500001 chrX_21500001 RAL-223 3996 chrX 21565399 21565433 chrX 21565527 21565561 10 128 1.5 14.0 7.8 1.1 162 chrX 21565399 intergenic not near genes chrX 21565480 intergenic not near genes chrX 21565561 intergenic not near genes chrX_10_21565001 chrX_21565001 RAL-223 3997 chrX 21567934 21568054 chrX 21568045 21568172 8 118 0.5 0.5 0.5 5.3 238 chrX 21567934 intergenic not near genes chrX 21568053 intergenic not near genes chrX 21568172 intergenic not near genes chrX_8_21565001 chrX_21565001 RAL-223 3998 chrX 21595533 21595558 chrX 21598656 21598676 micropia 10 3122 7.5 9.5 8.5 1.1 3143 chrX 21595533 intergenic not near genes chrX 21597104 intergenic not near genes chrX 21598676 intergenic not near genes chrX_10_21595001 chrX_21595001 RAL-223 3999 chrX 21602808 21602884 chrX 21602968 21603044 8 158 8.0 6.5 7.2 1.0 236 chrX 21602808 exon CG14476 - chrX 21602926 intron CG14476 - chrX 21603044 exon CG14476 - chrX_8_21600001 chrX_21600001 RAL-223 4000 chrX 21668210 21668287 chrX 21668345 21668422 31 134 44.0 42.5 43.2 0.7 212 chrX 21668210 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668422 intergenic not near genes chrX_31_21665001 chrX_21665001 RAL-223 4001 chrX 22522585 22522646 chrX 22525454 22525516 NOF 23 2870 10.5 9.5 10.0 2.1 2931 chrX 22522585 intron CG17600 + chrX 22524050 intron CG17600 + chrX 22525516 intron CG17600 + chrX_23_22520001 chrX_22520001 RAL-223 4002 chrX 22585463 22585522 chrX 22585596 22585656 13 134 6.0 0.0 3.0 3.2 193 chrX 22585463 intron Cda4 - chrX 22585560 intron Cda4 - chrX 22585656 intron Cda4 - chrX_13_22585001 chrX_22585001 RAL-223 4003 chrX 22620452 22620512 chrX 22626770 22626829 297 15 6317 5.5 7.0 6.2 2.1 6377 chrX 22620452 intron Cda4 - chrX 22623640 intron Cda4 - chrX 22626829 intron Cda4 - chrX_15_22620001 chrX_22620001 RAL-223 4004 chrX 22660530 22660604 chrX 22660664 22660738 12 134 4.5 4.5 4.5 2.2 208 chrX 22660530 intron CR44997 + chrX 22660634 intron CR44997 + chrX 22660738 intron CR44997 + chrX_12_22660001 chrX_22660001 RAL-223 4005 chrX 22665746 22665824 chrX 22665875 22665943 28 127 11.5 7.0 9.2 2.7 197 chrX 22665746 intron CR44997 + chrX 22665844 intron CR44997 + chrX 22665943 intron CR44997 + chrX_28_22665001 chrX_22665001 RAL-223 4006 chrX 22734416 22734448 chrX 22734540 22734577 11 129 6.5 5.0 5.8 1.6 161 chrX 22734416 intron CR44997 + chrX 22734496 intron CR44997 + chrX 22734577 intron CR44997 + chrX_11_22730001 chrX_22730001 RAL-223 4007 chrX 22771462 22771525 chrX 22774803 22774866 297 17 3340 8.0 6.5 7.2 2.1 3404 chrX 22771462 intron CR44997 + chrX 22773164 intron CR44997 + chrX 22774866 intron CR44997 + chrX_17_22770001 chrX_22770001 RAL-223 4008 chrX 22784047 22784106 chrX 22784180 22784239 19 133 4.5 9.5 7.0 2.4 192 chrX 22784047 intron CR44997 + chrX 22784143 intron CR44997 + chrX 22784239 intron CR44997 + chrX_19_22780001 chrX_22780001 RAL-223 4009 chrX 22796949 22797020 chrX 22797084 22797155 13 134 0.5 6.5 3.5 2.9 206 chrX 22796949 intron CR44997 + chrX 22797052 intron CR44997 + chrX 22797155 intron CR44997 + chrX_13_22795001 chrX_22795001 RAL-223 4010 chrX 22811961 22812005 chrX 22816783 22816827 F-element 13 4822 11.0 5.5 8.2 1.4 4866 chrX 22811961 intergenic CG12446 - chrX 22814394 intergenic not near genes chrX 22816827 intergenic not near genes chrX_13_22810001 chrX_22810001 RAL-223 4011 chrX 22862115 22862126 chrX 22862265 22862277 4 151 11.0 11.5 11.2 0.3 162 chrX 22862115 intron CG42346 + chrX 22862196 intron CG42346 + chrX 22862277 intron CG42346 + chrX_4_22860001 chrX_22860001 RAL-223 4012 chrX 22869125 22869158 chrX 22869252 22869280 13 125 6.5 4.5 5.5 2.0 155 chrX 22869125 intron CG42346 + chrX 22869202 intron CG42346 + chrX 22869280 intron CG42346 + chrX_13_22865001 chrX_22865001 RAL-223 4013 chrX 22870821 22870894 chrX 22870962 22871035 22 140 7.0 6.5 6.8 2.8 214 chrX 22870821 intron,3` UTR CG42346 +,CR43656 - chrX 22870928 intron,3` UTR CG42346 +,CR43656 - chrX 22871035 intron,3` UTR CG42346 +,CR43656 - chrX_22_22870001 chrX_22870001 RAL-223 4014 chrX 22967343 22967382 chrX 23154544 23154583 diver 7 187199 16.5 29.0 22.8 0.3 187240 chrX 22967343 intergenic not near genes chrX 23060963 intergenic not near genes chrX 23154583 intergenic not near genes chrX_7_23060001 chrX_23060001 RAL-223 4015 chrX 22987075 22987124 chrX 22989784 22989833 Burdock 12 2708 6.5 10.0 8.2 1.3 2758 chrX 22987075 intron,intron stnA -,stnB - chrX 22988454 intron,intron stnA -,stnB - chrX 22989833 intron,intron stnA -,stnB - chrX_12_22985001 chrX_22985001 RAL-223 4016 chrX 22996267 22996332 chrX 23003551 23003613 roo 24 7282 5.5 9.0 7.2 2.9 7346 chrX 22996267 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003613 intron,intron stnA -,stnB - chrX_24_22995001 chrX_22995001 RAL-223 4017 chrY 975608 975823 chrY 975768 975980 21 151 178.5 174.0 176.2 0.1 372 chrY 975608 intergenic not near genes chrY 975794 intergenic not near genes chrY 975980 intergenic not near genes chrY_21_975001 chrY_975001 RAL-223 4018 chrY 1419853 1419888 chrY 1420157 1420192 8 304 21.0 7.0 14.0 0.5 339 chrY 1419853 intergenic not near genes chrY 1420022 intergenic not near genes chrY 1420192 intergenic not near genes chrY_8_1420001 chrY_1420001 RAL-223 4019 chrY 1445412 1445436 chrY 1447393 1447416 13 1980 33.0 17.0 25.0 0.5 2004 chrY 1445412 intergenic not near genes chrY 1446414 intergenic not near genes chrY 1447416 intergenic not near genes chrY_13_1445001 chrY_1445001 RAL-223 4020 chrY 3561962 3562032 chrY 3562095 3562165 6 133 8.0 10.0 9.0 0.6 203 chrY 3561962 intergenic not near genes chrY 3562064 intergenic not near genes chrY 3562165 intergenic not near genes chrY_6_3560001 chrY_3560001 RAL-223 4021 chrY 3664569 3664616 chrY 3664722 3664769 6 153 2.0 2.0 2.0 2.0 200 chrY 3664569 intergenic CG40948 + chrY 3664669 intergenic CG40948 + chrY 3664769 intergenic CG40948 + chrY_6_3660001 chrY_3660001 RAL-223 4022 chrY 3666400 3666445 chrY 3666602 3666648 8 203 1.5 2.0 1.8 2.9 248 chrY 3666400 intergenic not near genes chrY 3666524 intergenic not near genes chrY 3666648 intergenic not near genes chrY_8_3665001 chrY_3665001 RAL-223