SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47445	47446	chr2L	52570	52571	jockey	5	5125	14.5	11.5	13.0	0.4	5126	chr2L	47445	intron	Cda5 -	chr2L	50008	intron	Cda5 -	chr2L	52571	intron	Cda5 -	chr2L_5_50001	chr2L_50001	RAL-21
2	chr2L	47454	47488	chr2L	52563	52613	jockey	18	5122	8.5	10.0	9.2	1.8	5159	chr2L	47454	intron	Cda5 -	chr2L	50034	intron	Cda5 -	chr2L	52613	intron	Cda5 -	chr2L_18_50001	chr2L_50001	RAL-21
3	chr2L	45961	45981	chr2L	53378	53395	jockey	4	7415	16.5	30.0	23.2	0.2	7434	chr2L	45961	intron	Cda5 -	chr2L	49678	intron	Cda5 -	chr2L	53395	intron	Cda5 -	chr2L_4_45001	chr2L_45001	RAL-21
4	chr2L	45956	46002	chr2L	53398	53416	jockey	5	7421	17.0	27.0	22.0	0.2	7460	chr2L	45956	intron	Cda5 -	chr2L	49686	intron	Cda5 -	chr2L	53416	intron	Cda5 -	chr2L_5_45001	chr2L_45001	RAL-21
6	chr2L	347878	347915	chr2L	355391	355434	blood	13	7515	5.0	5.5	5.2	2.1	7556	chr2L	347878	3` UTR	Plc21C +	chr2L	351656	intron	Plc21C +	chr2L	355434	3` UTR	Plc21C +	chr2L_13_350001	chr2L_350001	RAL-21
11	chr2L	686920	686939	chr2L	695980	695998	roo	4	9059	1.5	5.0	3.2	1.0	9078	chr2L	686920	intron	ds -	chr2L	691459	intron	ds -	chr2L	695998	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-21
14	chr2L	770454	770487	chr2L	772250	772287	Bari1	4	1792	1.0	0.0	0.5	2.7	1833	chr2L	770454	intergenic	not near genes	chr2L	771370	intergenic	not near genes	chr2L	772287	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	RAL-21
18	chr2L	976859	976876	chr2L	984515	984532	roo	4	7656	7.5	1.5	4.5	0.7	7673	chr2L	976859	intergenic	not near genes	chr2L	980696	intergenic	not near genes	chr2L	984532	intergenic	not near genes	chr2L_4_980001	chr2L_980001	RAL-21
19	chr2L	996709	996748	chr2L	1005824	1005863	roo	9	9115	2.0	1.5	1.8	3.2	9154	chr2L	996709	intergenic	not near genes	chr2L	1001286	intergenic	not near genes	chr2L	1005863	intergenic	not near genes	chr2L_9_1000001	chr2L_1000001	RAL-21
24	chr2L	1220112	1220159	chr2L	1227598	1227645	blood	14	7486	5.0	1.0	3.0	3.5	7533	chr2L	1220112	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227645	intron	CG42329 +	chr2L_14_1220001	chr2L_1220001	RAL-21
28	chr2L	1570672	1570713	chr2L	1573564	1573605	F-element	11	2890	4.0	0.0	2.0	3.7	2933	chr2L	1570672	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573605	intron	haf +	chr2L_11_1570001	chr2L_1570001	RAL-21
30	chr2L	1678963	1678997	chr2L	1686448	1686482	blood	10	7485	2.5	6.5	4.5	1.8	7519	chr2L	1678963	intron	chinmo +	chr2L	1682722	intron	chinmo +	chr2L	1686482	intron	chinmo +	chr2L_10_1680001	chr2L_1680001	RAL-21
31	chr2L	1711341	1711385	chr2L	1711685	1711729	mdg3	5	340	1.5	2.0	1.8	1.8	388	chr2L	1711341	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711729	3` UTR	frtz -	chr2L_5_1710001	chr2L_1710001	RAL-21
36	chr2L	2100385	2100405	chr2L	2109543	2109566	roo	5	9159	2.0	2.0	2.0	1.7	9181	chr2L	2100385	intron	dpr3 -	chr2L	2104976	intron	dpr3 -	chr2L	2109566	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-21
38	chr2L	2294042	2294068	chr2L	2299247	2299251	copia	4	5202	0.0	2.0	1.0	2.0	5209	chr2L	2294042	intergenic	not near genes	chr2L	2296646	intergenic	not near genes	chr2L	2299251	intergenic	not near genes	chr2L_4_2295001	chr2L_2295001	RAL-21
45	chr2L	2565543	2565569	chr2L	2571635	2571660	297	7	6092	2.5	3.0	2.8	1.8	6117	chr2L	2565543	exon	Cyp309a2 -	chr2L	2568602	intron	Cyp309a2 -	chr2L	2571660	exon	Cyp309a2 -	chr2L_7_2565001	chr2L_2565001	RAL-21
52	chr2L	3073013	3073055	chr2L	3078236	3078277	copia	11	5223	3.5	6.0	4.8	1.9	5264	chr2L	3073013	intron	toc -	chr2L	3075645	intron	toc -	chr2L	3078277	intron	toc -	chr2L_11_3075001	chr2L_3075001	RAL-21
58	chr2L	3202721	3202771	chr2L	3210170	3210220	mdg1	15	7447	2.5	6.0	4.2	2.9	7499	chr2L	3202721	intergenic	not near genes	chr2L	3206470	intergenic	not near genes	chr2L	3210220	intergenic	CR45336 +	chr2L_15_3205001	chr2L_3205001	RAL-21
60	chr2L	3251474	3251522	chr2L	3259059	3259107	springer	11	7585	5.0	2.5	3.8	2.3	7633	chr2L	3251474	intergenic	not near genes	chr2L	3255290	intergenic	not near genes	chr2L	3259107	intergenic	not near genes	chr2L_11_3255001	chr2L_3255001	RAL-21
62	chr2L	3388579	3388625	chr2L	3388840	3388886	pogo	13	260	3.0	1.5	2.2	4.1	307	chr2L	3388579	intergenic	CG42460 -	chr2L	3388732	intergenic	CG42460 -	chr2L	3388886	intergenic	CG42460 -,CR44791 +	chr2L_13_3385001	chr2L_3385001	RAL-21
69	chr2L	3649769	3649803	chr2L	3654991	3655019	copia	7	5219	1.0	4.0	2.5	2.0	5250	chr2L	3649769	intron	for -	chr2L	3652394	intron	for -	chr2L	3655019	intron	for -	chr2L_7_3650001	chr2L_3650001	RAL-21
77	chr2L	4066050	4066050	chr2L	4068864	4068895	Juan	4	2832	1.0	5.0	3.0	1.0	2845	chr2L	4066050	intron	ed +	chr2L	4067472	intron	ed +	chr2L	4068895	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-21
84	chr2L	4601691	4601733	chr2L	4609152	4609194	mdg1	7	7459	2.0	1.5	1.8	2.5	7503	chr2L	4601691	intron	dp -	chr2L	4605442	intron	dp -	chr2L	4609194	intron	dp -	chr2L_7_4605001	chr2L_4605001	RAL-21
85	chr2L	4661826	4661853	chr2L	4669426	4669453	opus	6	7600	6.5	5.0	5.8	0.9	7627	chr2L	4661826	intergenic	not near genes	chr2L	4665640	intergenic	not near genes	chr2L	4669453	intergenic	not near genes	chr2L_6_4665001	chr2L_4665001	RAL-21
91	chr2L	4918145	4918192	chr2L	4923238	4923323	jockey	7	5104	3.0	0.0	1.5	2.8	5178	chr2L	4918145	intron	hoe1 -	chr2L	4920734	intron	hoe1 -	chr2L	4923323	intron	hoe1 -	chr2L_7_4920001	chr2L_4920001	RAL-21
94	chr2L	4953495	4953529	chr2L	4953756	4953790	pogo	8	260	2.5	4.5	3.5	1.8	295	chr2L	4953495	intergenic	Jon25Bii -	chr2L	4953642	intergenic	not near genes	chr2L	4953790	intergenic	Jon25Bi -	chr2L_8_4950001	chr2L_4950001	RAL-21
113	chr2L	5827705	5827731	chr2L	5836733	5836759	roo	7	9026	6.5	3.5	5.0	1.2	9054	chr2L	5827705	intron	TrissinR +	chr2L	5832232	intron	TrissinR +	chr2L	5836759	intron	TrissinR +	chr2L_7_5830001	chr2L_5830001	RAL-21
126	chr2L	6363139	6363170	chr2L	6366085	6366105	Burdock	4	2943	5.5	2.0	3.8	0.8	2966	chr2L	6363139	intergenic	not near genes	chr2L	6364622	intergenic	not near genes	chr2L	6366105	intergenic	not near genes	chr2L_4_6360001	chr2L_6360001	RAL-21
127	chr2L	6426837	6426873	chr2L	6445117	6445153	roo	9	18279	9.0	2.0	5.5	1.4	18316	chr2L	6426837	3` UTR	CG9527 -	chr2L	6435995	intron	CG9527 -	chr2L	6445153	exon	CG9527 -	chr2L_9_6435001	chr2L_6435001	RAL-21
133	chr2L	6991419	6991436	chr2L	6998558	6998575	HMS-Beagle	5	7136	4.0	2.0	3.0	1.2	7156	chr2L	6991419	intron	uif -	chr2L	6994997	intron	uif -	chr2L	6998575	intron	uif -	chr2L_5_6990001	chr2L_6990001	RAL-21
142	chr2L	7343309	7343353	chr2L	7350445	7350488	roo	4	7132	2.5	0.5	1.5	1.6	7179	chr2L	7343309	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350488	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RAL-21
154	chr2L	7959028	7959070	chr2L	7960459	7960501	pogo	14	1427	4.5	4.0	4.2	2.7	1473	chr2L	7959028	intron	Snoo -	chr2L	7959764	intron	Snoo -	chr2L	7960501	intron	Snoo -	chr2L_14_7955001	chr2L_7955001	RAL-21
155	chr2L	7977070	7977110	chr2L	7984066	7984099	297	6	6995	0.5	0.5	0.5	4.0	7029	chr2L	7977070	intron	Snoo -	chr2L	7980584	intron	Snoo -	chr2L	7984099	intron,5` UTR	Snoo -,CG7231 +	chr2L_6_7980001	chr2L_7980001	RAL-21
160	chr2L	8013599	8013640	chr2L	8018816	8018837	copia	7	5218	5.5	0.0	2.8	1.8	5238	chr2L	8013599	intron	Tg +	chr2L	8016218	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_7_8015001	chr2L_8015001	RAL-21
161	chr2L	8018815	8018837	chr2L	8023619	8023641	Doc	11	4804	0.0	6.0	3.0	2.8	4826	chr2L	8018815	intron	Tg +	chr2L	8021228	intron	Tg +	chr2L	8023641	intron	Tg +	chr2L_11_8020001	chr2L_8020001	RAL-21
167	chr2L	8452400	8452447	chr2L	8461591	8461638	roo	13	9189	4.5	9.5	7.0	1.6	9238	chr2L	8452400	intron	fu12 -	chr2L	8457019	intron	fu12 -	chr2L	8461638	intron	fu12 -	chr2L_13_8455001	chr2L_8455001	RAL-21
170	chr2L	8594449	8594487	chr2L	8601523	8601561	297	6	7068	2.5	0.0	1.2	2.7	7112	chr2L	8594449	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598005	intron	Sema-1a +	chr2L	8601561	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	RAL-21
173	chr2L	8723095	8723133	chr2L	8731492	8731530	Tirant	15	8395	2.5	3.5	3.0	3.8	8435	chr2L	8723095	intron	raw -	chr2L	8727312	intron	raw -	chr2L	8731530	intron	raw -	chr2L_15_8725001	chr2L_8725001	RAL-21
181	chr2L	9000263	9000307	chr2L	9007793	9007837	roo	9	7529	2.0	3.5	2.8	2.4	7574	chr2L	9000263	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007837	intergenic	not near genes	chr2L_9_9000001	chr2L_9000001	RAL-21
194	chr2L	9393476	9393526	chr2L	9396463	9396487	jockey	13	2984	3.5	3.0	3.2	3.1	3011	chr2L	9393476	intron	Shawl -	chr2L	9394982	intron	Shawl -	chr2L	9396487	intron	Shawl -	chr2L_13_9390001	chr2L_9390001	RAL-21
200	chr2L	9770754	9770800	chr2L	9770871	9770912	1360	8	116	4.0	1.5	2.8	2.1	158	chr2L	9770754	intron	ppk18 -	chr2L	9770833	intron	ppk18 -	chr2L	9770912	exon	ppk18 -	chr2L_8_9770001	chr2L_9770001	RAL-21
207	chr2L	9973725	9973758	chr2L	9980846	9980896	HMS-Beagle	11	7124	4.0	3.5	3.8	2.3	7171	chr2L	9973725	intergenic	not near genes	chr2L	9977310	intergenic	not near genes	chr2L	9980896	intergenic	not near genes	chr2L_11_9975001	chr2L_9975001	RAL-21
221	chr2L	10592824	10592875	chr2L	10600506	10600557	opus	14	7680	2.5	1.5	2.0	4.7	7733	chr2L	10592824	intron	Trim9 +	chr2L	10596690	intron	Trim9 +	chr2L	10600557	intron	Trim9 +	chr2L_14_10595001	chr2L_10595001	RAL-21
241	chr2L	11540567	11540615	chr2L	11547992	11548037	Tabor	4	7424	2.5	3.0	2.8	1.1	7470	chr2L	11540567	intergenic	not near genes	chr2L	11544302	intergenic	not near genes	chr2L	11548037	intergenic	not near genes	chr2L_4_11540001	chr2L_11540001	RAL-21
243	chr2L	11563625	11563660	chr2L	11568848	11568884	copia	8	5224	3.5	5.5	4.5	1.5	5259	chr2L	11563625	intergenic	not near genes	chr2L	11566254	intergenic	not near genes	chr2L	11568884	intergenic	not near genes	chr2L_8_11565001	chr2L_11565001	RAL-21
249	chr2L	11713490	11713506	chr2L	11720978	11720978	blood	4	7482	3.0	3.5	3.2	1.0	7488	chr2L	11713490	intergenic	not near genes	chr2L	11717234	intergenic	not near genes	chr2L	11720978	intergenic	CR44143 +	chr2L_4_11715001	chr2L_11715001	RAL-21
250	chr2L	11713514	11713538	chr2L	11720975	11721026	blood	12	7484	3.0	3.5	3.2	2.9	7512	chr2L	11713514	intergenic	not near genes	chr2L	11717270	intergenic	not near genes	chr2L	11721026	intergenic	CR44143 +	chr2L_12_11715001	chr2L_11715001	RAL-21
261	chr2L	12067309	12067336	chr2L	12074380	12074408	297	7	7071	7.0	3.0	5.0	1.2	7099	chr2L	12067309	intergenic	not near genes	chr2L	12070858	intergenic	not near genes	chr2L	12074408	intergenic	not near genes	chr2L_7_12070001	chr2L_12070001	RAL-21
284	chr2L	12558310	12558338	chr2L	12565458	12565482	HMS-Beagle	4	7144	4.0	5.5	4.8	0.7	7172	chr2L	12558310	intergenic	not near genes	chr2L	12561896	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_4_12560001	chr2L_12560001	RAL-21
285	chr2L	12558342	12558348	chr2L	12565456	12565496	HMS-Beagle	5	7138	2.5	4.5	3.5	1.1	7154	chr2L	12558342	intergenic	not near genes	chr2L	12561919	intergenic	not near genes	chr2L	12565496	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	RAL-21
286	chr2L	12728906	12728933	chr2L	12729166	12729193	pogo	7	258	5.5	1.5	3.5	1.6	287	chr2L	12728906	intron	MRP +	chr2L	12729050	intron	MRP +	chr2L	12729193	exon	MRP +	chr2L_7_12725001	chr2L_12725001	RAL-21
287	chr2L	12731048	12731089	chr2L	12735835	12735873	F-element	7	4782	2.0	3.0	2.5	2.0	4825	chr2L	12731048	intron	MRP +	chr2L	12733460	intron	MRP +	chr2L	12735873	intron	MRP +	chr2L_7_12730001	chr2L_12730001	RAL-21
288	chr2L	12739166	12739198	chr2L	12743967	12743999	Doc	7	4800	2.5	3.0	2.8	1.8	4833	chr2L	12739166	exon	MRP +	chr2L	12741582	intron	MRP +	chr2L	12743999	exon	MRP +	chr2L_7_12740001	chr2L_12740001	RAL-21
292	chr2L	12791587	12791640	chr2L	12795282	12795298	F-element	17	3690	1.5	5.0	3.2	4.0	3711	chr2L	12791587	intergenic	not near genes	chr2L	12793442	intergenic	not near genes	chr2L	12795298	intergenic	not near genes	chr2L_17_12790001	chr2L_12790001	RAL-21
294	chr2L	12933828	12933882	chr2L	12941315	12941369	blood	12	7486	2.5	2.0	2.2	3.8	7541	chr2L	12933828	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941369	intergenic	not near genes	chr2L_12_12935001	chr2L_12935001	RAL-21
303	chr2L	13241939	13241950	chr2L	13244343	13244354	BS	4	2404	0.0	0.5	0.2	3.3	2415	chr2L	13241939	5` UTR	CR45330 +	chr2L	13243146	intron	CR45330 +	chr2L	13244354	5` UTR	CR45330 +	chr2L_4_13240001	chr2L_13240001	RAL-21
306	chr2L	13405631	13405671	chr2L	13410447	13410486	Doc	14	4814	1.0	5.0	3.0	3.5	4855	chr2L	13405631	exon	CG7110 +	chr2L	13408058	intron	CG7110 +	chr2L	13410486	intron	CG7110 +	chr2L_14_13405001	chr2L_13405001	RAL-21
308	chr2L	13449447	13449494	chr2L	13456902	13456949	Quasimodo	17	7455	0.5	4.5	2.5	4.9	7502	chr2L	13449447	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453198	intron	CG42784 +	chr2L	13456949	intron	CG42784 +	chr2L_17_13450001	chr2L_13450001	RAL-21
309	chr2L	13481448	13481474	chr2L	13482073	13482101	jockey	5	627	4.0	3.5	3.8	1.0	653	chr2L	13481448	intron	CG42784 +	chr2L	13481774	intron	CG42784 +	chr2L	13482101	intron	CG42784 +	chr2L_5_13480001	chr2L_13480001	RAL-21
311	chr2L	13522118	13522158	chr2L	13527656	13527696	Transpac	19	5535	2.0	4.5	3.2	4.5	5578	chr2L	13522118	intron	B4 -	chr2L	13524907	intron	B4 -	chr2L	13527696	intron	B4 -	chr2L_19_13520001	chr2L_13520001	RAL-21
312	chr2L	13560392	13560417	chr2L	13565232	13565257	F-element	7	4840	5.0	1.5	3.2	1.7	4865	chr2L	13560392	intron	kuz +	chr2L	13562824	intron	kuz +	chr2L	13565257	intron	kuz +	chr2L_7_13560001	chr2L_13560001	RAL-21
315	chr2L	13761795	13761822	chr2L	13762921	13762933	Doc	8	1125	5.0	6.5	5.8	1.2	1138	chr2L	13761795	intron	TM9SF4 +	chr2L	13762364	intron	TM9SF4 +	chr2L	13762933	intron	TM9SF4 +	chr2L_8_13760001	chr2L_13760001	RAL-21
318	chr2L	13853069	13853111	chr2L	13862239	13862281	roo	9	9169	3.5	9.0	6.2	1.2	9212	chr2L	13853069	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862281	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	RAL-21
333	chr2L	14642554	14642601	chr2L	14651737	14651784	roo	12	9181	1.5	4.0	2.8	3.2	9230	chr2L	14642554	intron	osp -	chr2L	14647169	intron	osp -	chr2L	14651784	intron	osp -	chr2L_12_14645001	chr2L_14645001	RAL-21
337	chr2L	14803861	14803912	chr2L	14809084	14809135	copia	6	5222	3.5	4.0	3.8	1.2	5274	chr2L	14803861	intergenic	not near genes	chr2L	14806498	intergenic	not near genes	chr2L	14809135	intergenic	not near genes	chr2L_6_14805001	chr2L_14805001	RAL-21
355	chr2L	15446044	15446080	chr2L	15453518	15453569	blood	9	7486	4.5	1.0	2.8	2.4	7525	chr2L	15446044	intergenic	not near genes	chr2L	15449806	intergenic	not near genes	chr2L	15453569	intergenic	not near genes	chr2L_9_15445001	chr2L_15445001	RAL-21
359	chr2L	15586398	15586433	chr2L	15593464	15593505	297	5	7071	5.0	6.0	5.5	0.8	7107	chr2L	15586398	intergenic	not near genes	chr2L	15589952	intergenic	not near genes	chr2L	15593505	intergenic	not near genes	chr2L_5_15585001	chr2L_15585001	RAL-21
365	chr2L	15826876	15826891	chr2L	15829290	15829305	Tabor	4	2414	5.0	6.5	5.8	0.6	2429	chr2L	15826876	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829305	intergenic	not near genes	chr2L_4_15825001	chr2L_15825001	RAL-21
367	chr2L	15956023	15956055	chr2L	15957489	15957517	hobo	8	1476	3.0	3.5	3.2	1.9	1494	chr2L	15956023	intron	beat-Ib -	chr2L	15956770	intron	beat-Ib -	chr2L	15957517	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-21
374	chr2L	16141169	16141194	chr2L	16146396	16146421	copia	7	5227	0.5	5.0	2.8	1.8	5252	chr2L	16141169	intergenic	not near genes	chr2L	16143795	intergenic	not near genes	chr2L	16146421	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	RAL-21
382	chr2L	16511954	16511979	chr2L	16519181	16519206	HMS-Beagle	6	7226	4.5	12.0	8.2	0.7	7252	chr2L	16511954	intron	CG5953 -	chr2L	16515580	intron	CG5953 -	chr2L	16519206	intron	CG5953 -	chr2L_6_16515001	chr2L_16515001	RAL-21
399	chr2L	16958087	16958134	chr2L	16962895	16962942	Doc	10	4808	3.5	4.0	3.8	2.1	4855	chr2L	16958087	intergenic	not near genes	chr2L	16960514	intergenic	not near genes	chr2L	16962942	intergenic	not near genes	chr2L_10_16960001	chr2L_16960001	RAL-21
407	chr2L	17199149	17199188	chr2L	17200636	17200675	hobo	9	1487	3.0	6.5	4.8	1.6	1526	chr2L	17199149	intron	beat-IIIc -	chr2L	17199912	intron	beat-IIIc -	chr2L	17200675	intron	beat-IIIc -	chr2L_9_17195001	chr2L_17195001	RAL-21
411	chr2L	17273179	17273228	chr2L	17277982	17277995	F-element	10	4796	2.0	4.0	3.0	2.5	4816	chr2L	17273179	intergenic	not near genes	chr2L	17275587	intergenic	not near genes	chr2L	17277995	intergenic	not near genes	chr2L_10_17275001	chr2L_17275001	RAL-21
414	chr2L	17432018	17432047	chr2L	17432145	17432174	1360	8	127	0.0	7.5	3.8	1.7	156	chr2L	17432018	intron	Dif -	chr2L	17432096	intron	Dif -	chr2L	17432174	intron	Dif -	chr2L_8_17430001	chr2L_17430001	RAL-21
421	chr2L	17727742	17727778	chr2L	17729448	17729487	hobo	7	1704	3.5	0.0	1.8	2.5	1745	chr2L	17727742	intron	CadN -	chr2L	17728614	intron	CadN -	chr2L	17729487	intron	CadN -	chr2L_7_17725001	chr2L_17725001	RAL-21
424	chr2L	17951926	17951982	chr2L	17953413	17953429	hobo	19	1483	4.5	0.5	2.5	5.4	1503	chr2L	17951926	intergenic	CR44398 -,CR44397 -	chr2L	17952678	intergenic	not near genes	chr2L	17953429	intergenic	not near genes	chr2L_19_17950001	chr2L_17950001	RAL-21
429	chr2L	18408010	18408027	chr2L	18412814	18412831	Doc	9	4803	9.5	4.5	7.0	1.1	4821	chr2L	18408010	intergenic	not near genes	chr2L	18410420	intergenic	not near genes	chr2L	18412831	intergenic	not near genes	chr2L_9_18410001	chr2L_18410001	RAL-21
430	chr2L	18408031	18408054	chr2L	18412809	18412853	Doc	12	4801	7.0	3.5	5.2	1.9	4822	chr2L	18408031	intergenic	not near genes	chr2L	18410442	intergenic	not near genes	chr2L	18412853	intergenic	not near genes	chr2L_12_18410001	chr2L_18410001	RAL-21
441	chr2L	19147357	19147400	chr2L	19154407	19154455	297	8	7051	2.5	3.0	2.8	2.1	7098	chr2L	19147357	intron	brat +	chr2L	19150906	intron	brat +	chr2L	19154455	intron	brat +	chr2L_8_19150001	chr2L_19150001	RAL-21
446	chr2L	19345014	19345045	chr2L	19357225	19357253	blood	6	12222	1.0	2.5	1.8	2.1	12239	chr2L	19345014	intron	dnt -	chr2L	19351134	intron	dnt -	chr2L	19357253	intron	dnt -	chr2L_6_19350001	chr2L_19350001	RAL-21
453	chr2L	19620076	19620126	chr2L	19621085	19621105	jockey	9	1001	2.5	4.5	3.5	2.0	1029	chr2L	19620076	intron	Lar +	chr2L	19620590	intron	Lar +	chr2L	19621105	intron	Lar +	chr2L_9_19620001	chr2L_19620001	RAL-21
454	chr2L	19652553	19652601	chr2L	19674007	19674055	opus	15	21454	6.5	4.0	5.2	2.4	21502	chr2L	19652553	intron	Lar +	chr2L	19663304	intron	Lar +	chr2L	19674055	intron	Lar +	chr2L_15_19660001	chr2L_19660001	RAL-21
455	chr2L	19703528	19703568	chr2L	19712684	19712695	roo	13	9154	2.0	4.5	3.2	3.1	9167	chr2L	19703528	intron	Lar +	chr2L	19708112	intron	Lar +	chr2L	19712695	intron	Lar +	chr2L_13_19705001	chr2L_19705001	RAL-21
456	chr2L	19762821	19762834	chr2L	19763083	19763096	pogo	7	262	2.5	9.5	6.0	1.0	275	chr2L	19762821	intron	fbp -	chr2L	19762958	intron	fbp -	chr2L	19763096	intron	fbp -	chr2L_7_19760001	chr2L_19760001	RAL-21
465	chr2L	20005855	20005899	chr2L	20010951	20010973	flea	12	5094	4.5	5.0	4.8	2.1	5118	chr2L	20005855	intron	CG43861 -	chr2L	20008414	intron	CG43861 -	chr2L	20010973	intron	CG43861 -	chr2L_12_20005001	chr2L_20005001	RAL-21
471	chr2L	20272103	20272141	chr2L	20282833	20282872	copia	13	10729	6.5	6.0	6.2	1.8	10769	chr2L	20272103	intergenic	not near genes	chr2L	20277488	intergenic	not near genes	chr2L	20282872	intergenic	not near genes	chr2L_13_20275001	chr2L_20275001	RAL-21
474	chr2L	20303171	20303184	chr2L	20310643	20310662	blood	4	7476	1.0	7.5	4.2	0.8	7491	chr2L	20303171	intergenic	not near genes	chr2L	20306916	intergenic	not near genes	chr2L	20310662	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-21
475	chr2L	20372205	20372255	chr2L	20372475	20372516	pogo	7	268	0.5	6.0	3.2	1.7	311	chr2L	20372205	intergenic	Ugt37a1 -	chr2L	20372360	intergenic	Ugt37a1 -	chr2L	20372516	exon	Ugt37a1 -	chr2L_7_20370001	chr2L_20370001	RAL-21
477	chr2L	20568645	20568686	chr2L	20569050	20569088	X-element	10	406	2.0	1.5	1.8	3.6	443	chr2L	20568645	intron	CR45347 +	chr2L	20568866	intron	CR45347 +	chr2L	20569088	intron	CR45347 +	chr2L_10_20565001	chr2L_20565001	RAL-21
478	chr2L	20576217	20576248	chr2L	20583705	20583736	blood	5	7483	2.5	7.0	4.8	0.9	7519	chr2L	20576217	intergenic	CR45347 +	chr2L	20579976	intergenic	not near genes	chr2L	20583736	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-21
486	chr2L	20835795	20835841	chr2L	20836532	20836578	Quasimodo	10	737	4.5	4.0	4.2	1.9	783	chr2L	20835795	5` UTR	Oseg5 -	chr2L	20836186	intergenic	Oseg5 -,Spn38F -	chr2L	20836578	intergenic	Spn38F -	chr2L_10_20835001	chr2L_20835001	RAL-21
487	chr2L	20891520	20891542	chr2L	20896641	20896660	jockey	11	5120	3.5	2.0	2.8	2.9	5140	chr2L	20891520	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896660	intron,intron	CG43739 -,sky -	chr2L_11_20890001	chr2L_20890001	RAL-21
489	chr2L	20976632	20976669	chr2L	20981467	20981498	X-element	12	4833	3.5	4.0	3.8	2.5	4866	chr2L	20976632	intron	CG42238 -	chr2L	20979065	intron	CG42238 -	chr2L	20981498	intron	CG42238 -	chr2L_12_20975001	chr2L_20975001	RAL-21
490	chr2L	21020261	21020286	chr2L	21023958	21023983	NOF	5	3697	4.0	3.0	3.5	1.1	3722	chr2L	21020261	intron	CG42238 -	chr2L	21022122	intron	CG42238 -	chr2L	21023983	intron	CG42238 -	chr2L_5_21020001	chr2L_21020001	RAL-21
491	chr2L	21041119	21041167	chr2L	21049400	21049417	Tirant	6	8276	3.0	1.0	2.0	2.0	8298	chr2L	21041119	intron	CG42238 -	chr2L	21045268	intron	CG42238 -	chr2L	21049417	intron	CG42238 -	chr2L_6_21045001	chr2L_21045001	RAL-21
501	chr2L	21347541	21347578	chr2L	21355033	21355070	blood	15	7492	4.0	6.0	5.0	2.5	7529	chr2L	21347541	intron	Tsp39D +	chr2L	21351306	intron	Tsp39D +	chr2L	21355070	intron	Tsp39D +	chr2L_15_21350001	chr2L_21350001	RAL-21
503	chr2L	21597023	21597063	chr2L	21604780	21604827	roo	9	7760	4.5	3.0	3.8	1.9	7804	chr2L	21597023	intergenic	not near genes	chr2L	21600925	intergenic	not near genes	chr2L	21604827	intergenic	not near genes	chr2L_9_21600001	chr2L_21600001	RAL-21
504	chr2L	21653177	21653217	chr2L	21656500	21656541	invader4	15	3322	4.5	2.5	3.5	3.3	3364	chr2L	21653177	intergenic	not near genes	chr2L	21654859	intergenic	not near genes	chr2L	21656541	intergenic	not near genes	chr2L_15_21650001	chr2L_21650001	RAL-21
507	chr2L	21691817	21691860	chr2L	21698307	21698318	Burdock	6	6484	4.5	0.5	2.5	1.7	6501	chr2L	21691817	intron	CG31619 +	chr2L	21695068	intron	CG31619 +	chr2L	21698318	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	RAL-21
516	chr2L	21981676	21981698	chr2L	21990851	21990857	roo	5	9175	3.5	3.0	3.2	1.2	9181	chr2L	21981676	exon	CG2528 -	chr2L	21986266	intron	CG2528 -	chr2L	21990857	exon	CG2528 -	chr2L_5_21985001	chr2L_21985001	RAL-21
523	chr2L	22581953	22581990	chr2L	22583762	22583799	S-element	9	1809	11.0	3.0	7.0	1.1	1846	chr2L	22581953	intron	CG17494 +	chr2L	22582876	intron	CG17494 +	chr2L	22583799	intron	CG17494 +	chr2L_9_22580001	chr2L_22580001	RAL-21
526	chr2L	22679804	22679820	chr2L	22684586	22684594	F-element	4	4778	6.0	6.0	6.0	0.6	4790	chr2L	22679804	intron	CG40006 -	chr2L	22682199	intron	CG40006 -	chr2L	22684594	intron	CG40006 -	chr2L_4_22680001	chr2L_22680001	RAL-21
528	chr2L	22776404	22776451	chr2L	22778213	22778259	S-element	15	1807	3.5	5.0	4.2	2.9	1855	chr2L	22776404	intergenic	not near genes	chr2L	22777332	intergenic	not near genes	chr2L	22778259	intergenic	not near genes	chr2L_15_22775001	chr2L_22775001	RAL-21
530	chr2R	529318	529354	chr2R	537951	537966	Max-element	8	8634	3.5	2.5	3.0	2.0	8648	chr2R	529318	intron	CG40378 +	chr2R	533642	intron	CG40378 +	chr2R	537966	intron	CG40378 +	chr2R_8_530001	chr2R_530001	RAL-21
531	chr2R	1516585	1516603	chr2R	1521333	1521351	1731	7	4748	22.5	12.5	17.5	0.4	4766	chr2R	1516585	exon	Maf1 -	chr2R	1518968	intron	Maf1 -	chr2R	1521351	5` UTR	Maf1 -	chr2R_7_1515001	chr2R_1515001	RAL-21
534	chr2R	2498971	2499014	chr2R	2508138	2508181	roo	16	9163	4.0	5.0	4.5	2.9	9210	chr2R	2498971	intron	MFS17 -	chr2R	2503576	intron	MFS17 -	chr2R	2508181	intron	MFS17 -	chr2R_16_2500001	chr2R_2500001	RAL-21
535	chr2R	1373048	1373062	chr2R	2589326	2589340	Cr1a	4	1216279	14.5	21.0	17.8	0.2	1216292	chr2R	1373048	intron	l(2)41Ab +	chr2R	1981194	intron	CG17684 -	chr2R	2589340	intergenic	not near genes	chr2R_4_1980001	chr2R_1980001	RAL-21
536	chr2R	3532605	3532642	chr2R	3536068	3536105	Doc	6	3463	1.0	2.0	1.5	2.4	3500	chr2R	3532605	intergenic	not near genes	chr2R	3534355	intergenic	not near genes	chr2R	3536105	intergenic	not near genes	chr2R_6_3530001	chr2R_3530001	RAL-21
551	chr2R	5417976	5417991	chr2R	5420628	5420643	Burdock	9	2651	13.0	7.5	10.2	0.8	2667	chr2R	5417976	intron	laccase2 +	chr2R	5419310	intron	laccase2 +	chr2R	5420643	intron	laccase2 +	chr2R_9_5415001	chr2R_5415001	RAL-21
552	chr2R	5417995	5418023	chr2R	5420624	5420675	Burdock	8	2649	7.5	6.5	7.0	1.0	2680	chr2R	5417995	intron	laccase2 +	chr2R	5419335	intron	laccase2 +	chr2R	5420675	intron	laccase2 +	chr2R_8_5415001	chr2R_5415001	RAL-21
560	chr2R	5869255	5869304	chr2R	5874351	5874386	flea	16	5094	5.5	4.5	5.0	2.7	5131	chr2R	5869255	intergenic	not near genes	chr2R	5871820	intergenic	not near genes	chr2R	5874386	intergenic	not near genes	chr2R_16_5870001	chr2R_5870001	RAL-21
565	chr2R	5902137	5902165	chr2R	5909716	5909744	17.6	6	7578	7.5	3.0	5.2	1.0	7607	chr2R	5902137	intron	CG43366 +	chr2R	5905940	intron	CG43366 +	chr2R	5909744	intron	CG43366 +	chr2R_6_5905001	chr2R_5905001	RAL-21
571	chr2R	6096707	6096750	chr2R	6101918	6101959	BS	5	5207	2.5	2.0	2.2	1.6	5252	chr2R	6096707	intron	EcR -	chr2R	6099333	intron	EcR -	chr2R	6101959	intron	EcR -	chr2R_5_6095001	chr2R_6095001	RAL-21
577	chr2R	6579757	6579763	chr2R	6584863	6584869	flea	6	5106	13.0	3.5	8.2	0.7	5112	chr2R	6579757	intron	jing +	chr2R	6582313	intron	jing +	chr2R	6584869	intron	jing +	chr2R_6_6580001	chr2R_6580001	RAL-21
578	chr2R	6579767	6579796	chr2R	6584857	6584902	flea	6	5103	8.5	3.0	5.8	0.9	5135	chr2R	6579767	intron	jing +	chr2R	6582334	intron	jing +	chr2R	6584902	intron	jing +	chr2R_6_6580001	chr2R_6580001	RAL-21
583	chr2R	6952156	6952184	chr2R	6959756	6959784	opus	6	7600	4.5	9.0	6.8	0.8	7628	chr2R	6952156	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955970	intron,intron	mim -,CheB42c -	chr2R	6959784	intron,intron	mim -,CheB42c -	chr2R_6_6955001	chr2R_6955001	RAL-21
585	chr2R	7196557	7196591	chr2R	7201346	7201386	F-element	12	4794	6.5	3.5	5.0	2.0	4829	chr2R	7196557	intron	pk +	chr2R	7198972	intron	pk +	chr2R	7201386	intron	pk +	chr2R_12_7195001	chr2R_7195001	RAL-21
586	chr2R	7209848	7209872	chr2R	7217616	7217640	roo	15	7767	6.0	13.5	9.8	1.4	7792	chr2R	7209848	intron	pk +	chr2R	7213744	intron	pk +	chr2R	7217640	intron	pk +	chr2R_15_7210001	chr2R_7210001	RAL-21
587	chr2R	7235804	7235836	chr2R	7240916	7240933	jockey	7	5109	4.5	2.5	3.5	1.6	5129	chr2R	7235804	intergenic	not near genes	chr2R	7238368	intergenic	not near genes	chr2R	7240933	intergenic	not near genes	chr2R_7_7235001	chr2R_7235001	RAL-21
589	chr2R	7262180	7262219	chr2R	7269261	7269275	297	4	7070	2.5	5.0	3.8	0.8	7095	chr2R	7262180	intergenic	not near genes	chr2R	7265728	intergenic	not near genes	chr2R	7269275	intergenic	not near genes	chr2R_4_7265001	chr2R_7265001	RAL-21
591	chr2R	7434892	7434916	chr2R	7439213	7439235	Juan	11	4321	4.5	5.0	4.8	1.9	4343	chr2R	7434892	intergenic	so +	chr2R	7437064	intergenic	not near genes	chr2R	7439235	intergenic	not near genes	chr2R_11_7435001	chr2R_7435001	RAL-21
593	chr2R	7608389	7608432	chr2R	7613612	7613655	I-element	8	5220	7.5	7.0	7.2	1.0	5266	chr2R	7608389	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613655	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	RAL-21
595	chr2R	7815651	7815701	chr2R	7822140	7822169	Burdock	12	6485	5.0	3.5	4.2	2.3	6518	chr2R	7815651	intergenic	CG1882 +	chr2R	7818910	intergenic	not near genes	chr2R	7822169	3` UTR	cathD -	chr2R_12_7815001	chr2R_7815001	RAL-21
596	chr2R	7862210	7862251	chr2R	7867346	7867383	flea	8	5132	1.5	3.5	2.5	2.3	5173	chr2R	7862210	intron	Dgk -	chr2R	7864796	intron	Dgk -	chr2R	7867383	intron	Dgk -	chr2R_8_7860001	chr2R_7860001	RAL-21
597	chr2R	7869176	7869210	chr2R	7873979	7874012	Doc	5	4801	8.0	1.5	4.8	0.9	4836	chr2R	7869176	intron	Dgk -	chr2R	7871594	intron	Dgk -	chr2R	7874012	intron	Dgk -	chr2R_5_7870001	chr2R_7870001	RAL-21
601	chr2R	8330843	8330887	chr2R	8331349	8331393	roo	10	506	2.5	2.0	2.2	3.1	550	chr2R	8330843	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331393	intron	pdm3 +	chr2R_10_8330001	chr2R_8330001	RAL-21
602	chr2R	8398216	8398226	chr2R	8403002	8403027	Doc	4	4794	1.5	1.0	1.2	1.8	4811	chr2R	8398216	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403027	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-21
606	chr2R	8566041	8566067	chr2R	8567007	8567033	1360	6	966	6.0	5.5	5.8	0.9	992	chr2R	8566041	5` UTR	Cyp6a14 -	chr2R	8566537	5` UTR	Cyp6a14 -	chr2R	8567033	5` UTR	Cyp6a14 -	chr2R_6_8565001	chr2R_8565001	RAL-21
608	chr2R	8722747	8722776	chr2R	8723008	8723035	pogo	8	259	4.0	4.5	4.2	1.5	288	chr2R	8722747	intron	CG14767 -	chr2R	8722891	intron	CG14767 -	chr2R	8723035	intron	CG14767 -	chr2R_8_8720001	chr2R_8720001	RAL-21
609	chr2R	8777926	8777944	chr2R	8784132	8784168	diver	8	6218	2.0	6.5	4.2	1.5	6242	chr2R	8777926	intergenic	not near genes	chr2R	8781047	intergenic	not near genes	chr2R	8784168	intergenic	not near genes	chr2R_8_8780001	chr2R_8780001	RAL-21
614	chr2R	9151281	9151332	chr2R	9157771	9157822	Burdock	20	6488	2.5	3.5	3.0	5.0	6541	chr2R	9151281	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157822	intergenic	CG8008 -	chr2R_20_9150001	chr2R_9150001	RAL-21
615	chr2R	9212686	9212699	chr2R	9213180	9213205	roo	5	502	4.5	3.5	4.0	1.0	519	chr2R	9212686	intergenic	CR45309 +	chr2R	9212946	intergenic	CR45309 +	chr2R	9213205	5` UTR	CR45309 +	chr2R_5_9210001	chr2R_9210001	RAL-21
620	chr2R	9480059	9480109	chr2R	9490610	9490649	roo	18	10549	5.0	5.0	5.0	3.0	10590	chr2R	9480059	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490649	intergenic	not near genes	chr2R_18_9485001	chr2R_9485001	RAL-21
622	chr2R	9726597	9726638	chr2R	9734168	9734209	17.6	18	7571	3.0	7.0	5.0	3.0	7612	chr2R	9726597	intron	sqa -	chr2R	9730403	intron	sqa -	chr2R	9734209	intron	sqa -	chr2R_18_9730001	chr2R_9730001	RAL-21
623	chr2R	9871040	9871064	chr2R	9871524	9871570	roo	4	500	3.5	2.0	2.8	1.1	530	chr2R	9871040	intron	cbx -	chr2R	9871305	intron	cbx -	chr2R	9871570	intron,5` UTR	cbx -,CG18446 +	chr2R_4_9870001	chr2R_9870001	RAL-21
628	chr2R	9945448	9945457	chr2R	9945625	9945673	BS	4	198	3.5	4.5	4.0	0.8	225	chr2R	9945448	intron	Mef2 -	chr2R	9945560	intron	Mef2 -	chr2R	9945673	intron	Mef2 -	chr2R_4_9945001	chr2R_9945001	RAL-21
633	chr2R	10005835	10005873	chr2R	10007014	10007052	1360	8	1177	4.5	1.5	3.0	2.0	1217	chr2R	10005835	intron	Pka-R2 -	chr2R	10006444	intron	Pka-R2 -	chr2R	10007052	intron	Pka-R2 -	chr2R_8_10005001	chr2R_10005001	RAL-21
641	chr2R	10176865	10176910	chr2R	10186051	10186097	roo	11	9187	3.5	2.5	3.0	2.8	9232	chr2R	10176865	intron	KCNQ -	chr2R	10181481	intron	KCNQ -	chr2R	10186097	intron	KCNQ -	chr2R_11_10180001	chr2R_10180001	RAL-21
667	chr2R	10622335	10622360	chr2R	10637119	10637144	mdg1	5	14782	4.0	1.0	2.5	1.4	14809	chr2R	10622335	intron	CG11883 +	chr2R	10629740	intron	CG11883 +	chr2R	10637144	intron	CG11883 +	chr2R_5_10625001	chr2R_10625001	RAL-21
675	chr2R	10948038	10948062	chr2R	10955578	10955633	17.6	6	7559	1.0	3.5	2.2	1.9	7595	chr2R	10948038	intergenic	not near genes	chr2R	10951836	intergenic	not near genes	chr2R	10955633	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-21
677	chr2R	10979660	10979681	chr2R	10980133	10980169	297	5	481	2.0	3.5	2.8	1.3	509	chr2R	10979660	intergenic	not near genes	chr2R	10979914	intergenic	not near genes	chr2R	10980169	intergenic	not near genes	chr2R_5_10975001	chr2R_10975001	RAL-21
678	chr2R	11009795	11009836	chr2R	11018989	11019001	roo	6	9183	6.0	3.5	4.8	1.0	9206	chr2R	11009795	intron	luna -	chr2R	11014398	intron	luna -	chr2R	11019001	intron	luna -	chr2R_6_11010001	chr2R_11010001	RAL-21
684	chr2R	11207799	11207848	chr2R	11208012	11208018	BS	10	208	4.0	8.5	6.2	1.4	219	chr2R	11207799	intron	shn +	chr2R	11207908	intron	shn +	chr2R	11208018	intron	shn +	chr2R_10_11205001	chr2R_11205001	RAL-21
687	chr2R	11297620	11297634	chr2R	11301964	11301978	flea	4	4344	3.0	0.0	1.5	1.6	4358	chr2R	11297620	intergenic	CG42336 -	chr2R	11299799	intergenic	not near genes	chr2R	11301978	5` UTR	CG7741 +	chr2R_4_11295001	chr2R_11295001	RAL-21
691	chr2R	11415504	11415539	chr2R	11418673	11418708	opus	8	3168	5.5	5.5	5.5	1.2	3204	chr2R	11415504	intron	Drip -	chr2R	11417106	intron	Drip -	chr2R	11418708	intron	Drip -	chr2R_8_11415001	chr2R_11415001	RAL-21
692	chr2R	11472636	11472675	chr2R	11473853	11473892	pogo	11	1214	5.0	6.0	5.5	1.7	1256	chr2R	11472636	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473892	intergenic	not near genes	chr2R_11_11470001	chr2R_11470001	RAL-21
707	chr2R	12481153	12481162	chr2R	12482957	12482986	roo	4	1813	2.0	3.0	2.5	1.1	1833	chr2R	12481153	exon	Dh44-R2 +	chr2R	12482070	intron	Dh44-R2 +	chr2R	12482986	intron	Dh44-R2 +	chr2R_4_12480001	chr2R_12480001	RAL-21
708	chr2R	12501699	12501720	chr2R	12503854	12503902	Rt1c	4	2174	0.5	2.0	1.2	1.8	2203	chr2R	12501699	intron	fdl -	chr2R	12502800	intron	fdl -	chr2R	12503902	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-21
713	chr2R	12707497	12707548	chr2R	12715883	12715934	roo	15	8386	4.0	3.0	3.5	3.3	8437	chr2R	12707497	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715934	intron	CG42663 +	chr2R_15_12710001	chr2R_12710001	RAL-21
717	chr2R	12819449	12819477	chr2R	12824534	12824564	jockey	4	5083	1.0	1.5	1.2	1.8	5115	chr2R	12819449	intergenic	not near genes	chr2R	12822006	intergenic	not near genes	chr2R	12824564	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-21
726	chr2R	13136833	13136863	chr2R	13141641	13141674	Doc	5	4814	2.5	4.0	3.2	1.2	4841	chr2R	13136833	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141674	intron	Cap-G +	chr2R_5_13135001	chr2R_13135001	RAL-21
735	chr2R	13580483	13580525	chr2R	13580853	13580882	jockey	8	366	2.5	2.0	2.2	2.5	399	chr2R	13580483	3` UTR	CG6191 -	chr2R	13580682	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580882	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_8_13580001	chr2R_13580001	RAL-21
739	chr2R	13728114	13728133	chr2R	13735794	13735803	opus	6	7678	4.5	0.0	2.2	1.9	7689	chr2R	13728114	intron	fas +	chr2R	13731958	intron	fas +	chr2R	13735803	intron	fas +	chr2R_6_13730001	chr2R_13730001	RAL-21
745	chr2R	13905587	13905610	chr2R	13907589	13907612	Rt1a	9	1997	6.0	2.5	4.2	1.7	2025	chr2R	13905587	intron	shot -	chr2R	13906600	intron	shot -	chr2R	13907612	intron	shot -	chr2R_9_13905001	chr2R_13905001	RAL-21
758	chr2R	14467306	14467319	chr2R	14476483	14476487	roo	6	9176	1.5	5.0	3.2	1.4	9181	chr2R	14467306	intergenic	not near genes	chr2R	14471896	intergenic	not near genes	chr2R	14476487	5` UTR	CR44462 +	chr2R_6_14470001	chr2R_14470001	RAL-21
759	chr2R	14497377	14497400	chr2R	14498556	14498586	1360	8	1184	7.5	6.5	7.0	1.0	1209	chr2R	14497377	3` UTR	Cpsf160 -	chr2R	14497982	intron	Cpsf160 -	chr2R	14498586	3` UTR	Cpsf160 -	chr2R_8_14495001	chr2R_14495001	RAL-21
760	chr2R	14497401	14497416	chr2R	14498553	14498598	1360	7	1178	5.0	6.0	5.5	1.1	1197	chr2R	14497401	3` UTR	Cpsf160 -	chr2R	14498000	intron	Cpsf160 -	chr2R	14498598	3` UTR	Cpsf160 -	chr2R_7_14495001	chr2R_14495001	RAL-21
764	chr2R	14889193	14889239	chr2R	14897821	14897836	Max-element	10	8620	7.0	0.0	3.5	2.2	8643	chr2R	14889193	intergenic	Cyp6a8 -	chr2R	14893514	intergenic	not near genes	chr2R	14897836	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	RAL-21
771	chr2R	15004712	15004761	chr2R	15005061	15005086	jockey	18	347	3.5	4.5	4.0	3.6	374	chr2R	15004712	intergenic	not near genes	chr2R	15004899	intergenic	not near genes	chr2R	15005086	intergenic	not near genes	chr2R_18_15000001	chr2R_15000001	RAL-21
772	chr2R	15015441	15015485	chr2R	15022885	15022926	mdg1	20	7442	0.5	2.0	1.2	9.1	7485	chr2R	15015441	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022926	intron	hbs +	chr2R_20_15015001	chr2R_15015001	RAL-21
774	chr2R	15119299	15119345	chr2R	15127800	15127831	Tirant	6	8489	4.0	1.0	2.5	1.7	8532	chr2R	15119299	intron	chn +	chr2R	15123565	intron	chn +	chr2R	15127831	intron	chn +	chr2R_6_15120001	chr2R_15120001	RAL-21
786	chr2R	16539621	16539668	chr2R	16544850	16544897	copia	15	5229	4.0	4.0	4.0	3.0	5276	chr2R	16539621	intergenic	not near genes	chr2R	16542259	intergenic	not near genes	chr2R	16544897	intergenic	not near genes	chr2R_15_16540001	chr2R_16540001	RAL-21
796	chr2R	17147242	17147267	chr2R	17152293	17152318	jockey	9	5051	4.0	8.0	6.0	1.3	5076	chr2R	17147242	intergenic	not near genes	chr2R	17149780	intergenic	not near genes	chr2R	17152318	intergenic	not near genes	chr2R_9_17145001	chr2R_17145001	RAL-21
798	chr2R	17176358	17176386	chr2R	17182558	17182596	diver	12	6209	0.0	3.0	1.5	4.8	6238	chr2R	17176358	intergenic	not near genes	chr2R	17179477	intergenic	not near genes	chr2R	17182596	intergenic	not near genes	chr2R_12_17175001	chr2R_17175001	RAL-21
799	chr2R	17236517	17236535	chr2R	17241741	17241759	copia	5	5223	5.0	4.0	4.5	0.9	5242	chr2R	17236517	intron	mbl +	chr2R	17239138	intron	mbl +	chr2R	17241759	intron	mbl +	chr2R_5_17235001	chr2R_17235001	RAL-21
805	chr2R	17485912	17485947	chr2R	17490686	17490735	F-element	6	4784	5.0	4.0	4.5	1.1	4823	chr2R	17485912	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488324	intron	NT5E-2 +	chr2R	17490735	intron	NT5E-2 +	chr2R_6_17485001	chr2R_17485001	RAL-21
808	chr2R	17782344	17782385	chr2R	17783567	17783608	pogo	13	1223	5.5	4.0	4.8	2.2	1264	chr2R	17782344	intergenic	CG33981 -,fab1 -	chr2R	17782976	intergenic	not near genes	chr2R	17783608	intergenic	mir-31a -	chr2R_13_17780001	chr2R_17780001	RAL-21
809	chr2R	17784004	17784054	chr2R	17784265	17784315	pogo	7	259	3.0	2.0	2.5	2.0	311	chr2R	17784004	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784315	intergenic	mir-31a -	chr2R_7_17780001	chr2R_17780001	RAL-21
815	chr2R	18045651	18045701	chr2R	18046023	18046073	jockey	16	372	6.0	5.5	5.8	2.4	422	chr2R	18045651	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046073	intergenic	CG5767 -	chr2R_16_18045001	chr2R_18045001	RAL-21
816	chr2R	18111672	18111711	chr2R	18115560	18115593	F-element	13	3888	5.5	3.5	4.5	2.4	3921	chr2R	18111672	intergenic	not near genes	chr2R	18113632	intergenic	not near genes	chr2R	18115593	intergenic	not near genes	chr2R_13_18110001	chr2R_18110001	RAL-21
823	chr2R	18358387	18358403	chr2R	18372619	18372619	roo	6	14228	5.5	0.5	3.0	1.5	14232	chr2R	18358387	intergenic	not near genes	chr2R	18365503	intergenic	not near genes	chr2R	18372619	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	RAL-21
828	chr2R	18575791	18575822	chr2R	18581984	18582030	3S18	9	6196	1.5	1.5	1.5	3.6	6239	chr2R	18575791	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582030	intron	GEFmeso -	chr2R_9_18575001	chr2R_18575001	RAL-21
846	chr2R	19776585	19776620	chr2R	19779928	19779962	jockey	14	3341	5.5	4.0	4.8	2.4	3377	chr2R	19776585	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779962	intergenic	not near genes	chr2R_14_19775001	chr2R_19775001	RAL-21
851	chr2R	19957421	19957448	chr2R	19962643	19962670	copia	4	5222	4.5	2.5	3.5	0.9	5249	chr2R	19957421	intergenic	CG44623 +	chr2R	19960046	intergenic	not near genes	chr2R	19962670	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-21
862	chr2R	20739432	20739474	chr2R	20744220	20744243	F-element	4	4778	1.0	2.5	1.8	1.4	4811	chr2R	20739432	intron	dpr +	chr2R	20741838	intron	dpr +	chr2R	20744243	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-21
863	chr2R	20783300	20783325	chr2R	20788086	20788114	F-element	6	4789	4.0	5.5	4.8	1.0	4814	chr2R	20783300	intergenic	not near genes	chr2R	20785707	intergenic	not near genes	chr2R	20788114	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-21
868	chr2R	21151102	21151145	chr2R	21153755	21153798	opus	13	2652	4.5	5.0	4.8	2.2	2696	chr2R	21151102	intron	CG30389 -	chr2R	21152450	intron	CG30389 -	chr2R	21153798	intron	CG30389 -	chr2R_13_21150001	chr2R_21150001	RAL-21
879	chr2R	21753068	21753098	chr2R	21753573	21753584	roo	5	501	4.0	4.0	4.0	1.0	516	chr2R	21753068	intergenic	not near genes	chr2R	21753326	intergenic	not near genes	chr2R	21753584	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-21
881	chr2R	21809506	21809544	chr2R	21817766	21817804	roo	10	8259	5.5	3.5	4.5	1.8	8298	chr2R	21809506	intergenic	not near genes	chr2R	21813655	intergenic	not near genes	chr2R	21817804	intergenic	not near genes	chr2R_10_21810001	chr2R_21810001	RAL-21
894	chr2R	22349708	22349720	chr2R	22351490	22351524	jockey	4	1798	2.5	5.0	3.8	0.8	1816	chr2R	22349708	intron	Liprin-gamma -	chr2R	22350616	intron	Liprin-gamma -	chr2R	22351524	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-21
895	chr2R	22360364	22360390	chr2R	22360817	22360829	jockey	8	449	6.5	3.5	5.0	1.3	465	chr2R	22360364	intron	Liprin-gamma -	chr2R	22360596	intron	Liprin-gamma -	chr2R	22360829	intron	Liprin-gamma -	chr2R_8_22360001	chr2R_22360001	RAL-21
899	chr2R	22465300	22465345	chr2R	22465519	22465564	BS	14	219	4.5	7.0	5.8	2.1	264	chr2R	22465300	intron	CG10384 +	chr2R	22465432	intron	CG10384 +	chr2R	22465564	intron	CG10384 +	chr2R_14_22465001	chr2R_22465001	RAL-21
904	chr2R	22774956	22775001	chr2R	22775384	22775440	jockey	12	436	3.5	1.5	2.5	3.4	484	chr2R	22774956	intron	CG42260 -	chr2R	22775198	intron	CG42260 -	chr2R	22775440	intron	CG42260 -	chr2R_12_22775001	chr2R_22775001	RAL-21
905	chr2R	22843012	22843044	chr2R	22844992	22845026	flea	17	1982	6.0	4.5	5.2	2.7	2014	chr2R	22843012	intergenic	CG9826 +	chr2R	22844019	intergenic	not near genes	chr2R	22845026	intergenic	not near genes	chr2R_17_22840001	chr2R_22840001	RAL-21
914	chr2R	23402590	23402640	chr2R	23407686	23407736	flea	9	5095	2.5	5.5	4.0	1.8	5146	chr2R	23402590	intergenic	CG3520 -	chr2R	23405163	intergenic	not near genes	chr2R	23407736	intergenic	not near genes	chr2R_9_23405001	chr2R_23405001	RAL-21
923	chr2R	23914291	23914313	chr2R	23921935	23921957	412	4	7644	4.0	1.5	2.8	1.1	7666	chr2R	23914291	exon	kcc +	chr2R	23918124	intron	kcc +	chr2R	23921957	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-21
924	chr2R	23914314	23914330	chr2R	23921928	23921973	412	4	7633	1.0	1.5	1.2	1.8	7659	chr2R	23914314	exon	kcc +	chr2R	23918144	intron	kcc +	chr2R	23921973	exon	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-21
927	chr2R	24177216	24177266	chr2R	24184721	24184771	412	19	7505	5.0	5.5	5.2	3.1	7555	chr2R	24177216	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184771	3` UTR	Nop60B +	chr2R_19_24180001	chr2R_24180001	RAL-21
929	chr2R	24353413	24353444	chr2R	24361790	24361824	roo	9	8381	2.5	2.5	2.5	2.6	8411	chr2R	24353413	intron,intron	bs +,CR44811 -	chr2R	24357618	intron,intron	bs +,CR44811 -	chr2R	24361824	intron,intron	bs +,CR44811 -	chr2R_9_24355001	chr2R_24355001	RAL-21
941	chr2R	25141647	25141681	chr2R	25159345	25159391	roo	11	17708	4.5	6.0	5.2	1.8	17744	chr2R	25141647	intergenic	not near genes	chr2R	25150519	intergenic	not near genes	chr2R	25159391	intergenic	not near genes	chr2R_11_25150001	chr2R_25150001	RAL-21
950	chr3L	110192	110234	chr3L	119378	119421	roo	14	9186	4.5	2.5	3.5	3.1	9229	chr3L	110192	intergenic	not near genes	chr3L	114806	intergenic	not near genes	chr3L	119421	intergenic	not near genes	chr3L_14_110001	chr3L_110001	RAL-21
951	chr3L	402681	402706	chr3L	409747	409759	297	4	7066	1.0	5.0	3.0	1.0	7078	chr3L	402681	intergenic	not near genes	chr3L	406220	intergenic	not near genes	chr3L	409759	intergenic	not near genes	chr3L_4_405001	chr3L_405001	RAL-21
964	chr3L	789902	789943	chr3L	790401	790447	roo	15	504	5.5	8.5	7.0	1.9	545	chr3L	789902	intergenic	not near genes	chr3L	790174	intergenic	not near genes	chr3L	790447	intergenic	not near genes	chr3L_15_790001	chr3L_790001	RAL-21
969	chr3L	925161	925206	chr3L	932607	932652	mdg1	12	7444	3.0	2.5	2.8	3.2	7491	chr3L	925161	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932652	intron	Glut1 +	chr3L_12_925001	chr3L_925001	RAL-21
971	chr3L	939766	939787	chr3L	940899	940899	jockey	5	1130	1.5	5.0	3.2	1.2	1133	chr3L	939766	intron	Glut1 +	chr3L	940332	intron	Glut1 +	chr3L	940899	intron	Glut1 +	chr3L_5_940001	chr3L_940001	RAL-21
976	chr3L	1154119	1154161	chr3L	1163289	1163330	roo	5	9169	1.5	3.0	2.2	1.6	9211	chr3L	1154119	intron	bab2 -	chr3L	1158724	intron	bab2 -	chr3L	1163330	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-21
977	chr3L	1219595	1219615	chr3L	1227342	1227359	412	5	7745	0.0	3.5	1.8	1.8	7764	chr3L	1219595	intron	mwh +	chr3L	1223477	intron	mwh +	chr3L	1227359	intron	mwh +	chr3L_5_1220001	chr3L_1220001	RAL-21
983	chr3L	1505996	1506030	chr3L	1513603	1513647	17.6	15	7616	4.5	4.5	4.5	2.7	7651	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509822	intron,intron	Psa +,cue -	chr3L	1513647	intron,intron	Psa +,cue -	chr3L_15_1505001	chr3L_1505001	RAL-21
986	chr3L	1740838	1740885	chr3L	1741101	1741135	pogo	7	256	5.0	7.5	6.2	1.0	297	chr3L	1740838	intron	Gk +	chr3L	1740986	intron	Gk +	chr3L	1741135	intron	Gk +	chr3L_7_1740001	chr3L_1740001	RAL-21
993	chr3L	2108232	2108279	chr3L	2113456	2113497	copia	9	5223	2.0	3.0	2.5	2.6	5265	chr3L	2108232	intron	sls -	chr3L	2110864	intron	sls -	chr3L	2113497	intron	sls -	chr3L_9_2110001	chr3L_2110001	RAL-21
1002	chr3L	2447484	2447537	chr3L	2456658	2456677	roo	8	9169	2.0	2.5	2.2	2.5	9193	chr3L	2447484	intron	CG45186 +	chr3L	2452080	intron	CG45186 +	chr3L	2456677	intron	CG45186 +	chr3L_8_2450001	chr3L_2450001	RAL-21
1015	chr3L	2927831	2927872	chr3L	2936120	2936165	Tirant	9	8295	3.0	4.0	3.5	2.0	8334	chr3L	2927831	intron	Shab +	chr3L	2931998	intron	Shab +	chr3L	2936165	intron	Shab +	chr3L_9_2930001	chr3L_2930001	RAL-21
1017	chr3L	3040317	3040355	chr3L	3042123	3042164	S-element	10	1808	1.5	7.0	4.2	1.9	1847	chr3L	3040317	3` UTR	CG2162 +	chr3L	3041240	intergenic	not near genes	chr3L	3042164	intergenic	Jafrac2 +	chr3L_10_3040001	chr3L_3040001	RAL-21
1018	chr3L	3051723	3051750	chr3L	3051985	3052012	pogo	11	262	5.0	2.0	3.5	2.4	289	chr3L	3051723	3` UTR	CG32485 +	chr3L	3051868	intergenic	CG32485 +	chr3L	3052012	intergenic	CG32485 +	chr3L_11_3050001	chr3L_3050001	RAL-21
1019	chr3L	3281432	3281475	chr3L	3281948	3281965	Doc	7	505	1.0	4.0	2.5	2.0	533	chr3L	3281432	intron	CG12017 +	chr3L	3281698	intron	CG12017 +	chr3L	3281965	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-21
1024	chr3L	3475094	3475103	chr3L	3475524	3475562	jockey	6	455	3.0	3.0	3.0	1.5	468	chr3L	3475094	intron	CG42324 +	chr3L	3475328	intron	CG42324 +	chr3L	3475562	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-21
1027	chr3L	3601284	3601329	chr3L	3606610	3606660	copia	8	5329	5.0	3.5	4.2	1.5	5376	chr3L	3601284	intron	Eip63E +	chr3L	3603972	intron	Eip63E +	chr3L	3606660	intron	Eip63E +	chr3L_8_3600001	chr3L_3600001	RAL-21
1034	chr3L	3833721	3833739	chr3L	3833982	3834000	pogo	4	261	2.5	2.5	2.5	1.1	279	chr3L	3833721	intron	enc +	chr3L	3833860	intron	enc +	chr3L	3834000	intron	enc +	chr3L_4_3830001	chr3L_3830001	RAL-21
1062	chr3L	4901112	4901161	chr3L	4907322	4907364	diver	10	6208	1.0	3.5	2.2	3.1	6252	chr3L	4901112	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907364	intergenic	not near genes	chr3L_10_4900001	chr3L_4900001	RAL-21
1064	chr3L	5034146	5034183	chr3L	5043317	5043355	roo	6	9171	4.0	4.0	4.0	1.2	9209	chr3L	5034146	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043355	intron	Con -	chr3L_6_5035001	chr3L_5035001	RAL-21
1065	chr3L	5045440	5045462	chr3L	5050241	5050263	Doc	5	4801	8.0	2.0	5.0	0.8	4823	chr3L	5045440	intron	Con -	chr3L	5047852	intron	Con -	chr3L	5050263	intron	Con -	chr3L_5_5045001	chr3L_5045001	RAL-21
1072	chr3L	5299143	5299182	chr3L	5306599	5306638	Quasimodo	6	7455	5.0	5.0	5.0	1.0	7495	chr3L	5299143	intergenic	not near genes	chr3L	5302890	intergenic	not near genes	chr3L	5306638	intergenic	not near genes	chr3L_6_5300001	chr3L_5300001	RAL-21
1078	chr3L	5537716	5537727	chr3L	5538076	5538089	jockey	5	361	6.0	8.0	7.0	0.6	373	chr3L	5537716	intergenic	not near genes	chr3L	5537902	intergenic	not near genes	chr3L	5538089	intergenic	CG10625 -	chr3L_5_5535001	chr3L_5535001	RAL-21
1079	chr3L	5537732	5537758	chr3L	5538064	5538088	jockey	5	343	2.0	6.5	4.2	1.0	356	chr3L	5537732	intergenic	not near genes	chr3L	5537910	intergenic	CG10625 -	chr3L	5538088	intergenic	CG10625 -	chr3L_5_5535001	chr3L_5535001	RAL-21
1082	chr3L	5910013	5910062	chr3L	5910274	5910323	pogo	15	260	3.0	8.5	5.8	2.2	310	chr3L	5910013	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910323	intron	CG13288 +	chr3L_15_5910001	chr3L_5910001	RAL-21
1084	chr3L	6001669	6001714	chr3L	6004389	6004434	jockey	13	2718	4.5	0.5	2.5	3.7	2765	chr3L	6001669	intron	PVRAP +	chr3L	6003052	intron	PVRAP +	chr3L	6004434	intron	PVRAP +	chr3L_13_6000001	chr3L_6000001	RAL-21
1085	chr3L	6040346	6040393	chr3L	6042722	6042769	Doc	11	2373	6.0	3.5	4.8	1.9	2423	chr3L	6040346	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042769	intergenic	not near genes	chr3L_11_6040001	chr3L_6040001	RAL-21
1093	chr3L	6220907	6220911	chr3L	6230069	6230083	roo	5	9169	8.5	2.5	5.5	0.8	9176	chr3L	6220907	5` UTR	pncr008:3L +	chr3L	6225495	intergenic	not near genes	chr3L	6230083	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-21
1094	chr3L	6220925	6220941	chr3L	6230066	6230082	roo	4	9156	4.0	2.5	3.2	1.0	9157	chr3L	6220925	5` UTR	pncr008:3L +	chr3L	6225504	intergenic	not near genes	chr3L	6230082	intergenic	not near genes	chr3L_4_6225001	chr3L_6225001	RAL-21
1097	chr3L	6334988	6335038	chr3L	6335479	6335529	297	9	487	1.5	5.5	3.5	2.0	541	chr3L	6334988	intron	CG13300 -	chr3L	6335258	intron	CG13300 -	chr3L	6335529	intron	CG13300 -	chr3L_9_6335001	chr3L_6335001	RAL-21
1099	chr3L	6405639	6405675	chr3L	6432123	6432159	roo	12	26483	4.5	7.0	5.8	1.8	26520	chr3L	6405639	intron	CG42747 +	chr3L	6418899	intron	CG42747 +	chr3L	6432159	intron	CG42747 +	chr3L_12_6415001	chr3L_6415001	RAL-21
1104	chr3L	6781104	6781150	chr3L	6783137	6783180	Doc	9	2030	3.0	0.0	1.5	3.6	2076	chr3L	6781104	intergenic	not near genes	chr3L	6782142	intergenic	not near genes	chr3L	6783180	intergenic	not near genes	chr3L_9_6780001	chr3L_6780001	RAL-21
1108	chr3L	6887503	6887542	chr3L	6895015	6895049	roo	14	7512	4.5	4.0	4.2	2.7	7546	chr3L	6887503	intergenic	not near genes	chr3L	6891276	intergenic	not near genes	chr3L	6895049	intergenic	not near genes	chr3L_14_6890001	chr3L_6890001	RAL-21
1111	chr3L	6994894	6994912	chr3L	6995524	6995542	BS	9	630	0.0	2.0	1.0	4.5	648	chr3L	6994894	intergenic	bin +	chr3L	6995218	intergenic	not near genes	chr3L	6995542	intergenic	not near genes	chr3L_9_6995001	chr3L_6995001	RAL-21
1116	chr3L	7129933	7129980	chr3L	7130145	7130192	BS	12	212	3.5	4.5	4.0	2.4	259	chr3L	7129933	intergenic	CG15829 +	chr3L	7130062	intergenic	CG15829 +	chr3L	7130192	intergenic	not near genes	chr3L_12_7130001	chr3L_7130001	RAL-21
1120	chr3L	7377297	7377342	chr3L	7380422	7380467	297	10	3125	2.5	3.0	2.8	2.6	3170	chr3L	7377297	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380467	intron	SMSr -	chr3L_10_7375001	chr3L_7375001	RAL-21
1123	chr3L	7498743	7498772	chr3L	7503540	7503569	F-element	9	4797	7.0	9.0	8.0	1.0	4826	chr3L	7498743	5` UTR	CG8539 -	chr3L	7501156	intergenic	not near genes	chr3L	7503569	intergenic	not near genes	chr3L_9_7500001	chr3L_7500001	RAL-21
1132	chr3L	7793696	7793732	chr3L	7800768	7800804	297	8	7072	5.5	4.0	4.8	1.4	7108	chr3L	7793696	intron	CG32369 -	chr3L	7797250	intron	CG32369 -	chr3L	7800804	intron	CG32369 -	chr3L_8_7795001	chr3L_7795001	RAL-21
1134	chr3L	7886499	7886547	chr3L	7889036	7889083	Stalker4	10	2533	3.5	2.0	2.8	2.6	2584	chr3L	7886499	intron	CG32365 +	chr3L	7887791	intron	CG32365 +	chr3L	7889083	intron	CG32365 +	chr3L_10_7885001	chr3L_7885001	RAL-21
1135	chr3L	7916810	7916852	chr3L	7926001	7926043	roo	13	9190	3.0	3.5	3.2	3.1	9233	chr3L	7916810	3` UTR	syd -	chr3L	7921426	intron	syd -	chr3L	7926043	3` UTR	syd -	chr3L_13_7920001	chr3L_7920001	RAL-21
1137	chr3L	7985358	7985365	chr3L	7987706	7987713	NOF	6	2347	10.0	10.5	10.2	0.5	2355	chr3L	7985358	intron	nmo +	chr3L	7986536	intron	nmo +	chr3L	7987713	intron	nmo +	chr3L_6_7985001	chr3L_7985001	RAL-21
1138	chr3L	7985367	7985396	chr3L	7987696	7987719	NOF	10	2336	5.0	7.0	6.0	1.4	2352	chr3L	7985367	intron	nmo +	chr3L	7986543	intron	nmo +	chr3L	7987719	intron	nmo +	chr3L_10_7985001	chr3L_7985001	RAL-21
1140	chr3L	8019688	8019706	chr3L	8024120	8024123	NOF	5	4425	5.0	3.0	4.0	1.0	4435	chr3L	8019688	intron	nmo +	chr3L	8021906	intron	nmo +	chr3L	8024123	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RAL-21
1141	chr3L	8019711	8019734	chr3L	8024115	8024126	NOF	9	4422	3.0	2.5	2.8	2.4	4415	chr3L	8019711	intron	nmo +	chr3L	8021918	intron	nmo +	chr3L	8024126	intron	nmo +	chr3L_9_8020001	chr3L_8020001	RAL-21
1149	chr3L	8395272	8395277	chr3L	8395389	8395394	INE-1	4	117	0.0	12.0	6.0	0.6	122	chr3L	8395272	intergenic	not near genes	chr3L	8395333	intergenic	not near genes	chr3L	8395394	intergenic	not near genes	chr3L_4_8395001	chr3L_8395001	RAL-21
1151	chr3L	8498284	8498324	chr3L	8505770	8505811	blood	9	7485	5.5	6.0	5.8	1.3	7527	chr3L	8498284	intron	CG43163 -	chr3L	8502048	intron	CG43163 -	chr3L	8505811	intron	CG43163 -	chr3L_9_8500001	chr3L_8500001	RAL-21
1162	chr3L	9076923	9076951	chr3L	9084503	9084531	412	7	7576	4.5	6.0	5.2	1.1	7608	chr3L	9076923	exon	Tequila +	chr3L	9080727	intron	Tequila +	chr3L	9084531	exon	Tequila +	chr3L_7_9080001	chr3L_9080001	RAL-21
1167	chr3L	9164680	9164713	chr3L	9166167	9166200	hobo	6	1484	5.0	0.0	2.5	1.7	1520	chr3L	9164680	intron	Rdl -	chr3L	9165440	intron	Rdl -	chr3L	9166200	intron	Rdl -	chr3L_6_9165001	chr3L_9165001	RAL-21
1169	chr3L	9270601	9270646	chr3L	9278376	9278421	roo	9	7775	3.0	3.0	3.0	2.2	7820	chr3L	9270601	intron	GluRIB +	chr3L	9274511	intron	GluRIB +	chr3L	9278421	exon	GluRIB +	chr3L_9_9270001	chr3L_9270001	RAL-21
1174	chr3L	9443491	9443518	chr3L	9445302	9445305	S-element	7	1808	6.5	0.0	3.2	1.7	1814	chr3L	9443491	intron	CG33926 +	chr3L	9444398	intron	CG33926 +	chr3L	9445305	intron	CG33926 +	chr3L_7_9440001	chr3L_9440001	RAL-21
1177	chr3L	9501681	9501733	chr3L	9502187	9502239	roo	5	506	2.5	1.5	2.0	1.7	558	chr3L	9501681	intron	path -	chr3L	9501960	intron	path -	chr3L	9502239	intron	path -	chr3L_5_9500001	chr3L_9500001	RAL-21
1181	chr3L	9571894	9571936	chr3L	9572262	9572304	jockey	13	368	1.0	7.0	4.0	2.6	410	chr3L	9571894	intron	CG42673 +	chr3L	9572099	intron	CG42673 +	chr3L	9572304	intron	CG42673 +	chr3L_13_9570001	chr3L_9570001	RAL-21
1182	chr3L	9575894	9575937	chr3L	9580992	9581036	jockey	7	5092	3.0	4.5	3.8	1.5	5142	chr3L	9575894	intron	CG42673 +	chr3L	9578465	intron	CG42673 +	chr3L	9581036	intron	CG42673 +	chr3L_7_9575001	chr3L_9575001	RAL-21
1197	chr3L	9929648	9929686	chr3L	9938447	9938485	roo	7	8799	5.0	4.0	4.5	1.3	8837	chr3L	9929648	intron	CG34356 +	chr3L	9934066	intron	CG34356 +	chr3L	9938485	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-21
1215	chr3L	10414928	10414972	chr3L	10417316	10417364	Doc	8	2391	5.5	4.5	5.0	1.3	2436	chr3L	10414928	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417364	intergenic	not near genes	chr3L_8_10415001	chr3L_10415001	RAL-21
1232	chr3L	11087046	11087088	chr3L	11088854	11088897	S-element	8	1808	0.5	1.0	0.8	4.4	1851	chr3L	11087046	intron	JIL-1 -	chr3L	11087972	intron	JIL-1 -	chr3L	11088897	intron	JIL-1 -	chr3L_8_11085001	chr3L_11085001	RAL-21
1234	chr3L	11264444	11264493	chr3L	11271416	11271465	17.6	10	6971	3.0	4.0	3.5	2.2	7021	chr3L	11264444	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271465	intergenic	not near genes	chr3L_10_11265001	chr3L_11265001	RAL-21
1237	chr3L	11329690	11329722	chr3L	11332902	11332947	jockey	5	3216	2.0	1.5	1.8	1.8	3257	chr3L	11329690	intergenic	not near genes	chr3L	11331318	intergenic	not near genes	chr3L	11332947	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-21
1246	chr3L	11723065	11723109	chr3L	11727879	11727913	Doc	12	4814	3.0	6.5	4.8	2.1	4848	chr3L	11723065	3` UTR	Bmcp +	chr3L	11725489	intron	Bmcp +	chr3L	11727913	3` UTR	Bmcp +	chr3L_12_11725001	chr3L_11725001	RAL-21
1274	chr3L	12874930	12874955	chr3L	12877225	12877267	jockey	10	2309	1.5	6.0	3.8	2.1	2337	chr3L	12874930	intergenic	not near genes	chr3L	12876098	intergenic	not near genes	chr3L	12877267	intergenic	not near genes	chr3L_10_12875001	chr3L_12875001	RAL-21
1275	chr3L	12919259	12919286	chr3L	12924747	12924754	Rt1c	4	5482	6.5	2.5	4.5	0.7	5495	chr3L	12919259	intergenic	not near genes	chr3L	12922006	intergenic	not near genes	chr3L	12924754	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-21
1276	chr3L	12957779	12957785	chr3L	12962276	12962287	copia	4	4501	6.5	1.5	4.0	0.8	4508	chr3L	12957779	intergenic	not near genes	chr3L	12960033	intergenic	not near genes	chr3L	12962287	intergenic	not near genes	chr3L_4_12960001	chr3L_12960001	RAL-21
1277	chr3L	12957795	12957815	chr3L	12962268	12962317	copia	9	4498	5.0	1.0	3.0	2.2	4522	chr3L	12957795	intergenic	not near genes	chr3L	12960056	intergenic	not near genes	chr3L	12962317	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	RAL-21
1298	chr3L	13525141	13525181	chr3L	13532956	13532997	roo	8	7813	8.0	2.5	5.2	1.3	7856	chr3L	13525141	intergenic	not near genes	chr3L	13529069	intergenic	not near genes	chr3L	13532997	intergenic	not near genes	chr3L_8_13525001	chr3L_13525001	RAL-21
1315	chr3L	14245556	14245592	chr3L	14245670	14245704	1360	5	113	5.0	4.5	4.8	0.9	148	chr3L	14245556	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245704	intergenic	CR44561 -,CR44560 +	chr3L_5_14245001	chr3L_14245001	RAL-21
1316	chr3L	14295978	14296013	chr3L	14296484	14296519	roo	7	506	1.0	5.5	3.2	1.7	541	chr3L	14295978	intron	fz +	chr3L	14296248	intron	fz +	chr3L	14296519	intron	fz +	chr3L_7_14295001	chr3L_14295001	RAL-21
1317	chr3L	14312033	14312055	chr3L	14316841	14316889	X-element	4	4826	1.5	4.0	2.8	1.1	4856	chr3L	14312033	exon	fz +	chr3L	14314461	intron	fz +	chr3L	14316889	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-21
1323	chr3L	14468431	14468474	chr3L	14473657	14473700	copia	10	5225	3.0	2.5	2.8	2.6	5269	chr3L	14468431	intron	bbg -	chr3L	14471066	intron	bbg -	chr3L	14473700	intron	bbg -	chr3L_10_14470001	chr3L_14470001	RAL-21
1335	chr3L	14970746	14970757	chr3L	14971076	14971087	F-element	5	330	9.5	4.0	6.8	0.6	341	chr3L	14970746	intergenic	Tom +	chr3L	14970916	intergenic	not near genes	chr3L	14971087	intergenic	not near genes	chr3L_5_14970001	chr3L_14970001	RAL-21
1339	chr3L	15085043	15085083	chr3L	15086216	15086269	1360	5	1183	2.0	2.5	2.2	1.6	1226	chr3L	15085043	intron	cp309 -	chr3L	15085656	intron	cp309 -	chr3L	15086269	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-21
1344	chr3L	15295751	15295785	chr3L	15298614	15298648	gypsy5	10	2862	6.5	6.0	6.2	1.4	2897	chr3L	15295751	intergenic	not near genes	chr3L	15297200	intergenic	not near genes	chr3L	15298648	intergenic	Best4 +	chr3L_10_15295001	chr3L_15295001	RAL-21
1345	chr3L	15295789	15295795	chr3L	15298609	15298658	gypsy5	6	2854	3.5	6.0	4.8	1.0	2869	chr3L	15295789	intergenic	not near genes	chr3L	15297224	intergenic	not near genes	chr3L	15298658	intergenic	Best4 +	chr3L_6_15295001	chr3L_15295001	RAL-21
1350	chr3L	15423743	15423783	chr3L	15426607	15426647	opus	12	2864	6.5	6.0	6.2	1.7	2904	chr3L	15423743	intergenic	not near genes	chr3L	15425195	intergenic	not near genes	chr3L	15426647	intergenic	not near genes	chr3L_12_15425001	chr3L_15425001	RAL-21
1366	chr3L	16184090	16184102	chr3L	16188929	16188941	X-element	6	4839	9.0	3.5	6.2	0.8	4851	chr3L	16184090	intergenic	not near genes	chr3L	16186516	intergenic	not near genes	chr3L	16188941	intergenic	not near genes	chr3L_6_16185001	chr3L_16185001	RAL-21
1370	chr3L	16443834	16443864	chr3L	16446194	16446224	Doc	6	2356	3.5	3.0	3.2	1.4	2390	chr3L	16443834	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445029	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446224	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-21
1372	chr3L	16493977	16494012	chr3L	16494514	16494542	jockey	12	533	3.5	10.5	7.0	1.5	565	chr3L	16493977	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494260	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494542	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_12_16490001	chr3L_16490001	RAL-21
1378	chr3L	16616494	16616509	chr3L	16621842	16621855	297	6	5346	8.5	3.5	6.0	0.9	5361	chr3L	16616494	3` UTR	Abl -	chr3L	16619174	3` UTR	Abl -	chr3L	16621855	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	RAL-21
1379	chr3L	16616519	16616529	chr3L	16621836	16621868	297	6	5338	4.5	3.0	3.8	1.2	5349	chr3L	16616519	3` UTR	Abl -	chr3L	16619194	3` UTR	Abl -	chr3L	16621868	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	RAL-21
1382	chr3L	16684015	16684035	chr3L	16689256	16689276	copia	5	5241	3.0	5.0	4.0	1.0	5261	chr3L	16684015	intron,intron	Lasp -,CG43954 -	chr3L	16686646	intron,intron	Lasp -,CG43954 -	chr3L	16689276	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_5_16685001	chr3L_16685001	RAL-21
1391	chr3L	16945737	16945760	chr3L	16954890	16954896	roo	7	9147	1.5	2.0	1.8	2.5	9159	chr3L	16945737	exon	Obp73a +	chr3L	16950316	intergenic	not near genes	chr3L	16954896	5` UTR	Nc73EF +	chr3L_7_16950001	chr3L_16950001	RAL-21
1393	chr3L	17034925	17034933	chr3L	17035133	17035141	G2	6	208	4.5	6.0	5.2	1.0	216	chr3L	17034925	intergenic	not near genes	chr3L	17035033	intergenic	not near genes	chr3L	17035141	intergenic	not near genes	chr3L_6_17035001	chr3L_17035001	RAL-21
1394	chr3L	17034937	17034965	chr3L	17035130	17035173	G2	13	207	2.5	6.0	4.2	2.5	236	chr3L	17034937	intergenic	not near genes	chr3L	17035055	intergenic	not near genes	chr3L	17035173	intergenic	beg +	chr3L_13_17035001	chr3L_17035001	RAL-21
1395	chr3L	17084986	17085008	chr3L	17094155	17094177	roo	7	9169	6.5	7.0	6.8	0.9	9191	chr3L	17084986	intron	Rbp6 -	chr3L	17089582	intron	Rbp6 -	chr3L	17094177	intron	Rbp6 -	chr3L_7_17085001	chr3L_17085001	RAL-21
1396	chr3L	17085014	17085036	chr3L	17094152	17094205	roo	9	9164	3.5	6.5	5.0	1.5	9191	chr3L	17085014	intron	Rbp6 -	chr3L	17089610	intron	Rbp6 -	chr3L	17094205	intron	Rbp6 -	chr3L_9_17085001	chr3L_17085001	RAL-21
1402	chr3L	17516968	17517011	chr3L	17524537	17524576	412	4	7569	6.0	1.5	3.8	0.8	7608	chr3L	17516968	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524576	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	RAL-21
1408	chr3L	17730833	17730877	chr3L	17738183	17738227	mdg1	11	7349	4.0	2.5	3.2	2.6	7394	chr3L	17730833	intron	Ccn +	chr3L	17734530	intron	Ccn +	chr3L	17738227	intron	Ccn +	chr3L_11_17730001	chr3L_17730001	RAL-21
1411	chr3L	17799790	17799840	chr3L	17801597	17801647	S-element	18	1806	5.0	3.0	4.0	3.6	1857	chr3L	17799790	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801647	intron	NUCB1 -	chr3L_18_17800001	chr3L_17800001	RAL-21
1414	chr3L	17918372	17918404	chr3L	17921189	17921227	opus	5	2822	1.0	3.5	2.2	1.6	2855	chr3L	17918372	intergenic	not near genes	chr3L	17919800	intergenic	not near genes	chr3L	17921227	intergenic	not near genes	chr3L_5_17915001	chr3L_17915001	RAL-21
1417	chr3L	18047703	18047719	chr3L	18056780	18056786	roo	4	9074	3.5	5.5	4.5	0.7	9083	chr3L	18047703	intron	Eip75B -	chr3L	18052244	intron	Eip75B -	chr3L	18056786	intron	Eip75B -	chr3L_4_18050001	chr3L_18050001	RAL-21
1418	chr3L	18047726	18047731	chr3L	18056772	18056807	roo	4	9069	2.5	4.0	3.2	1.0	9081	chr3L	18047726	intron	Eip75B -	chr3L	18052266	intron	Eip75B -	chr3L	18056807	intron	Eip75B -	chr3L_4_18050001	chr3L_18050001	RAL-21
1442	chr3L	18506127	18506158	chr3L	18509609	18509641	F-element	9	3483	1.0	4.0	2.5	2.6	3514	chr3L	18506127	intergenic	not near genes	chr3L	18507884	intergenic	not near genes	chr3L	18509641	intergenic	not near genes	chr3L_9_18505001	chr3L_18505001	RAL-21
1443	chr3L	18528614	18528626	chr3L	18537795	18537806	roo	4	9181	8.0	3.0	5.5	0.6	9192	chr3L	18528614	intergenic	not near genes	chr3L	18533210	intergenic	not near genes	chr3L	18537806	intergenic	not near genes	chr3L_4_18530001	chr3L_18530001	RAL-21
1444	chr3L	18528629	18528656	chr3L	18537788	18537837	roo	7	9176	5.0	1.5	3.2	1.7	9208	chr3L	18528629	intergenic	not near genes	chr3L	18533233	intergenic	not near genes	chr3L	18537837	intergenic	not near genes	chr3L_7_18530001	chr3L_18530001	RAL-21
1445	chr3L	18593933	18593981	chr3L	18595933	18595984	Doc	18	2000	1.5	2.5	2.0	6.0	2051	chr3L	18593933	intergenic	term -	chr3L	18594958	intergenic	not near genes	chr3L	18595984	intergenic	CR45389 +	chr3L_18_18590001	chr3L_18590001	RAL-21
1448	chr3L	18710772	18710792	chr3L	18718742	18718762	Stalker2	7	7970	4.5	2.0	3.2	1.7	7990	chr3L	18710772	intergenic	not near genes	chr3L	18714767	intergenic	not near genes	chr3L	18718762	intergenic	not near genes	chr3L_7_18710001	chr3L_18710001	RAL-21
1451	chr3L	18772394	18772434	chr3L	18781095	18781127	roo	13	8700	4.5	6.5	5.5	2.0	8733	chr3L	18772394	intron	ftz-f1 -	chr3L	18776760	intron	ftz-f1 -	chr3L	18781127	intron	ftz-f1 -	chr3L_13_18775001	chr3L_18775001	RAL-21
1452	chr3L	18833766	18833810	chr3L	18834950	18834983	1360	6	1182	5.5	5.0	5.2	1.0	1217	chr3L	18833766	intron	Indy -	chr3L	18834374	intron	Indy -	chr3L	18834983	intron	Indy -	chr3L_6_18830001	chr3L_18830001	RAL-21
1462	chr3L	19008836	19008867	chr3L	19009194	19009215	jockey	6	356	5.0	6.0	5.5	0.9	379	chr3L	19008836	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009215	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-21
1465	chr3L	19117032	19117074	chr3L	19124491	19124541	mdg1	11	7463	5.0	5.5	5.2	1.8	7509	chr3L	19117032	intron	CG14082 -	chr3L	19120786	intron	CG14082 -	chr3L	19124541	intron	CG14082 -	chr3L_11_19120001	chr3L_19120001	RAL-21
1471	chr3L	19208043	19208086	chr3L	19209437	19209474	Doc	4	1392	4.5	1.0	2.8	1.1	1431	chr3L	19208043	intron	fz2 -	chr3L	19208758	intron	fz2 -	chr3L	19209474	intron	fz2 -	chr3L_4_19205001	chr3L_19205001	RAL-21
1484	chr3L	19820283	19820309	chr3L	19827852	19827878	412	11	7569	2.5	4.0	3.2	2.6	7595	chr3L	19820283	intron	Deaf1 +	chr3L	19824080	intron	Deaf1 +	chr3L	19827878	intron	Deaf1 +	chr3L_11_19820001	chr3L_19820001	RAL-21
1485	chr3L	19861808	19861843	chr3L	19863615	19863651	S-element	6	1807	2.0	3.0	2.5	1.7	1843	chr3L	19861808	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863651	intergenic	not near genes	chr3L_6_19860001	chr3L_19860001	RAL-21
1490	chr3L	20113644	20113652	chr3L	20122921	20122929	roo	7	9277	11.0	5.0	8.0	0.8	9285	chr3L	20113644	intergenic	not near genes	chr3L	20118286	intergenic	not near genes	chr3L	20122929	intergenic	not near genes	chr3L_7_20115001	chr3L_20115001	RAL-21
1491	chr3L	20113653	20113691	chr3L	20122920	20122962	roo	17	9276	3.5	5.0	4.2	3.3	9309	chr3L	20113653	intergenic	not near genes	chr3L	20118308	intergenic	not near genes	chr3L	20122962	intergenic	not near genes	chr3L_17_20115001	chr3L_20115001	RAL-21
1496	chr3L	20257312	20257358	chr3L	20258452	20258498	pogo	9	1140	5.5	4.5	5.0	1.5	1186	chr3L	20257312	intron	rdgC +	chr3L	20257905	intron	rdgC +	chr3L	20258498	intron	rdgC +	chr3L_9_20255001	chr3L_20255001	RAL-21
1500	chr3L	20476734	20476782	chr3L	20484353	20484401	springer	14	7619	5.0	3.5	4.2	2.7	7667	chr3L	20476734	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484401	3` UTR	ZnT77C -	chr3L_14_20480001	chr3L_20480001	RAL-21
1501	chr3L	20590050	20590088	chr3L	20590606	20590616	412	8	549	1.5	1.5	1.5	3.2	566	chr3L	20590050	intergenic	not near genes	chr3L	20590333	intergenic	not near genes	chr3L	20590616	intergenic	not near genes	chr3L_8_20590001	chr3L_20590001	RAL-21
1513	chr3L	21014927	21014943	chr3L	21023417	21023433	Tirant	4	8490	2.0	2.5	2.2	1.2	8506	chr3L	21014927	intron	skd -	chr3L	21019180	intron	skd -	chr3L	21023433	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-21
1515	chr3L	21151863	21151888	chr3L	21156947	21156993	flea	4	5099	2.5	5.5	4.0	0.8	5130	chr3L	21151863	intron	Ac78C -	chr3L	21154428	intron	Ac78C -	chr3L	21156993	intron	Ac78C -	chr3L_4_21150001	chr3L_21150001	RAL-21
1519	chr3L	21306128	21306181	chr3L	21315307	21315344	roo	17	9177	4.5	3.0	3.8	3.5	9216	chr3L	21306128	3` UTR	CG7632 +	chr3L	21310736	intron	Pc -	chr3L	21315344	3` UTR	Pc -	chr3L_17_21310001	chr3L_21310001	RAL-21
1520	chr3L	21361705	21361749	chr3L	21362679	21362723	G2	18	971	3.0	6.0	4.5	3.3	1018	chr3L	21361705	intergenic	CG32440 +	chr3L	21362214	intergenic	not near genes	chr3L	21362723	intergenic	not near genes	chr3L_18_21360001	chr3L_21360001	RAL-21
1521	chr3L	21372699	21372748	chr3L	21379227	21379276	McClintock	13	6528	6.0	3.0	4.5	2.4	6577	chr3L	21372699	intergenic	not near genes	chr3L	21375988	intergenic	not near genes	chr3L	21379276	intergenic	not near genes	chr3L_13_21375001	chr3L_21375001	RAL-21
1525	chr3L	21498830	21498868	chr3L	21500481	21500491	1360	5	1646	3.0	3.5	3.2	1.2	1661	chr3L	21498830	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499660	intron	Glg1 -	chr3L	21500491	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-21
1531	chr3L	21749297	21749319	chr3L	21754477	21754499	Doc	5	5179	3.0	3.5	3.2	1.2	5202	chr3L	21749297	intron	Syn1 -	chr3L	21751898	intron	Syn1 -	chr3L	21754499	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-21
1539	chr3L	21952432	21952470	chr3L	21953195	21953233	transib1	8	761	3.0	2.0	2.5	2.3	801	chr3L	21952432	intergenic	not near genes	chr3L	21952832	intergenic	not near genes	chr3L	21953233	intergenic	not near genes	chr3L_8_21950001	chr3L_21950001	RAL-21
1543	chr3L	22099658	22099705	chr3L	22105864	22105911	3S18	17	6202	3.0	5.5	4.2	3.3	6253	chr3L	22099658	intergenic	not near genes	chr3L	22102784	intergenic	not near genes	chr3L	22105911	intergenic	not near genes	chr3L_17_22100001	chr3L_22100001	RAL-21
1552	chr3L	22555748	22555788	chr3L	22563238	22563278	blood	7	7485	5.5	1.0	3.2	1.7	7530	chr3L	22555748	intergenic	not near genes	chr3L	22559513	intergenic	not near genes	chr3L	22563278	intergenic	not near genes	chr3L_7_22555001	chr3L_22555001	RAL-21
1554	chr3L	22577616	22577642	chr3L	22582411	22582450	Doc	5	4801	0.5	2.0	1.2	2.3	4834	chr3L	22577616	intergenic	not near genes	chr3L	22580033	intergenic	not near genes	chr3L	22582450	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	RAL-21
1555	chr3L	22617178	22617223	chr3L	22624650	22624653	blood	8	7466	2.5	4.5	3.5	1.8	7475	chr3L	22617178	intron	CG14459 -	chr3L	22620916	intron	CG14459 -	chr3L	22624653	intron	CG14459 -	chr3L_8_22620001	chr3L_22620001	RAL-21
1558	chr3L	22761368	22761416	chr3L	22766822	22766862	Ivk	19	5453	4.0	5.5	4.8	3.3	5494	chr3L	22761368	intron	SPoCk +	chr3L	22764115	intron	SPoCk +	chr3L	22766862	intron	SPoCk +	chr3L_19_22760001	chr3L_22760001	RAL-21
1561	chr3L	22865968	22866002	chr3L	22867121	22867155	Doc	14	1152	5.0	6.0	5.5	2.2	1187	chr3L	22865968	intron	CG33170 +	chr3L	22866562	intron	CG33170 +	chr3L	22867155	intron	CG33170 +	chr3L_14_22865001	chr3L_22865001	RAL-21
1565	chr3L	22989844	22989891	chr3L	22996838	22996885	297	13	6992	3.0	7.0	5.0	2.2	7041	chr3L	22989844	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996885	intergenic	not near genes	chr3L_13_22990001	chr3L_22990001	RAL-21
1566	chr3L	23042218	23042255	chr3L	23048991	23049011	gypsy6	7	6768	4.5	6.5	5.5	1.1	6793	chr3L	23042218	intergenic	not near genes	chr3L	23045614	intergenic	not near genes	chr3L	23049011	intergenic	not near genes	chr3L_7_23045001	chr3L_23045001	RAL-21
1571	chr3L	24012391	24012421	chr3L	24020752	24020780	roo	5	8358	7.0	5.5	6.2	0.7	8389	chr3L	24012391	intergenic	not near genes	chr3L	24016586	intergenic	not near genes	chr3L	24020780	intergenic	not near genes	chr3L_5_24015001	chr3L_24015001	RAL-21
1572	chr3L	24168614	24168634	chr3L	24176395	24176410	ZAM	5	7778	4.0	3.0	3.5	1.1	7796	chr3L	24168614	intron	Snap25 +	chr3L	24172512	intron	Snap25 +	chr3L	24176410	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-21
1573	chr3L	24791883	24791914	chr3L	24796678	24796713	Doc	8	4795	4.0	2.5	3.2	1.9	4830	chr3L	24791883	intergenic	not near genes	chr3L	24794298	intergenic	not near genes	chr3L	24796713	intergenic	not near genes	chr3L_8_24790001	chr3L_24790001	RAL-21
1586	chr3R	4105037	4105057	chr3R	4110255	4110281	copia	4	5222	5.0	5.0	5.0	0.7	5244	chr3R	4105037	intergenic	not near genes	chr3R	4107659	intergenic	not near genes	chr3R	4110281	intergenic	not near genes	chr3R_4_4105001	chr3R_4105001	RAL-21
1589	chr3R	4206050	4206099	chr3R	4211645	4211694	mdg3	13	5595	4.0	4.0	4.0	2.6	5644	chr3R	4206050	intron	CG14636 -	chr3R	4208872	intron	CG14636 -	chr3R	4211694	intron	CG14636 -	chr3R_13_4205001	chr3R_4205001	RAL-21
1590	chr3R	4366746	4366787	chr3R	4375139	4375190	roo	13	8401	5.5	2.5	4.0	2.6	8444	chr3R	4366746	3` UTR	CG1090 +	chr3R	4370968	intergenic	not near genes	chr3R	4375190	5` UTR	CR44922 +	chr3R_13_4370001	chr3R_4370001	RAL-21
1591	chr3R	4408402	4408434	chr3R	4412716	4412758	Juan	11	4321	5.5	4.0	4.8	1.9	4356	chr3R	4408402	intron	CG32944 -	chr3R	4410580	intron	CG32944 -	chr3R	4412758	intron	CG32944 -	chr3R_11_4410001	chr3R_4410001	RAL-21
1593	chr3R	4609532	4609577	chr3R	4610716	4610761	1360	14	1182	1.5	5.0	3.2	3.3	1229	chr3R	4609532	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610761	intergenic	not near genes	chr3R_14_4610001	chr3R_4610001	RAL-21
1596	chr3R	4887463	4887506	chr3R	4894860	4894868	rover	4	7384	4.0	0.5	2.2	1.2	7405	chr3R	4887463	intergenic	not near genes	chr3R	4891166	intergenic	not near genes	chr3R	4894868	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-21
1600	chr3R	5045828	5045878	chr3R	5052950	5053000	HMS-Beagle	15	7121	2.0	2.5	2.2	4.7	7172	chr3R	5045828	3` UTR	CR43635 -	chr3R	5049414	intergenic	not near genes	chr3R	5053000	intergenic	CR45588 -	chr3R_15_5045001	chr3R_5045001	RAL-21
1601	chr3R	5067962	5068013	chr3R	5073499	5073550	mdg3	21	5537	3.0	9.0	6.0	3.0	5588	chr3R	5067962	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073550	intergenic	not near genes	chr3R_21_5070001	chr3R_5070001	RAL-21
1604	chr3R	5338380	5338415	chr3R	5343577	5343612	Rt1c	13	5197	5.5	2.0	3.8	2.7	5232	chr3R	5338380	intron	mtd -	chr3R	5340996	intron	mtd -	chr3R	5343612	intron	mtd -	chr3R_13_5340001	chr3R_5340001	RAL-21
1606	chr3R	5445939	5445984	chr3R	5452419	5452464	Burdock	14	6478	5.0	3.0	4.0	2.8	6525	chr3R	5445939	intron	CG14669 +	chr3R	5449202	intron	CG14669 +	chr3R	5452464	intron	CG14669 +	chr3R_14_5445001	chr3R_5445001	RAL-21
1609	chr3R	5745997	5746044	chr3R	5746258	5746305	pogo	17	259	3.5	5.0	4.2	3.3	308	chr3R	5745997	3` UTR	Madm +	chr3R	5746151	3` UTR	Madm +	chr3R	5746305	3` UTR	Madm +	chr3R_17_5745001	chr3R_5745001	RAL-21
1610	chr3R	5747005	5747037	chr3R	5753204	5753248	diver	10	6209	4.5	3.0	3.8	2.1	6243	chr3R	5747005	intergenic	Madm +	chr3R	5750126	intergenic	not near genes	chr3R	5753248	intergenic	CG2091 -	chr3R_10_5750001	chr3R_5750001	RAL-21
1611	chr3R	5809126	5809138	chr3R	5809361	5809408	pogo	4	261	3.0	4.0	3.5	0.9	282	chr3R	5809126	3` UTR	CG11000 +	chr3R	5809267	3` UTR	CG11000 +	chr3R	5809408	3` UTR	CG11000 +	chr3R_4_5805001	chr3R_5805001	RAL-21
1612	chr3R	5822368	5822404	chr3R	5823555	5823590	1360	7	1187	7.0	4.5	5.8	1.0	1222	chr3R	5822368	3` UTR	CG2023 -	chr3R	5822979	3` UTR	CG2023 -	chr3R	5823590	3` UTR	CG2023 -	chr3R_7_5820001	chr3R_5820001	RAL-21
1613	chr3R	5927559	5927583	chr3R	5927808	5927841	pogo	7	253	3.0	5.0	4.0	1.4	282	chr3R	5927559	intron	CG34113 -	chr3R	5927700	intron	CG34113 -	chr3R	5927841	intron	CG34113 -	chr3R_7_5925001	chr3R_5925001	RAL-21
1617	chr3R	6121166	6121188	chr3R	6121404	6121411	BS	7	236	0.0	6.0	3.0	1.8	245	chr3R	6121166	intergenic	not near genes	chr3R	6121288	intergenic	not near genes	chr3R	6121411	intergenic	not near genes	chr3R_7_6120001	chr3R_6120001	RAL-21
1618	chr3R	6158492	6158529	chr3R	6167095	6167096	Tirant	4	8594	2.5	2.0	2.2	1.2	8604	chr3R	6158492	intergenic	not near genes	chr3R	6162794	intergenic	not near genes	chr3R	6167096	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	RAL-21
1619	chr3R	6206269	6206312	chr3R	6206505	6206519	BS	9	230	3.5	4.5	4.0	1.8	250	chr3R	6206269	exon	Osi24 +	chr3R	6206394	intron	Osi24 +	chr3R	6206519	intron	Osi24 +	chr3R_9_6205001	chr3R_6205001	RAL-21
1623	chr3R	6510013	6510048	chr3R	6515114	6515149	jockey	9	5101	5.5	4.5	5.0	1.5	5136	chr3R	6510013	intergenic	not near genes	chr3R	6512581	intergenic	not near genes	chr3R	6515149	intergenic	not near genes	chr3R_9_6510001	chr3R_6510001	RAL-21
1633	chr3R	6737496	6737524	chr3R	6739303	6739330	Doc	5	1807	1.0	7.0	4.0	1.0	1834	chr3R	6737496	intron	pb -	chr3R	6738413	intron	pb -	chr3R	6739330	intron	pb -	chr3R_5_6735001	chr3R_6735001	RAL-21
1654	chr3R	7641059	7641089	chr3R	7642643	7642663	hobo	6	1580	6.0	7.0	6.5	0.8	1604	chr3R	7641059	intergenic	not near genes	chr3R	7641861	intergenic	not near genes	chr3R	7642663	intergenic	not near genes	chr3R_6_7640001	chr3R_7640001	RAL-21
1656	chr3R	7729446	7729491	chr3R	7737404	7737437	Stalker2	16	7956	6.0	4.5	5.2	2.6	7991	chr3R	7729446	intergenic	not near genes	chr3R	7733442	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_16_7730001	chr3R_7730001	RAL-21
1661	chr3R	7973303	7973336	chr3R	7974385	7974418	1360	14	1081	3.5	6.0	4.8	2.4	1115	chr3R	7973303	intergenic	not near genes	chr3R	7973860	intergenic	not near genes	chr3R	7974418	3` UTR	CD98hc -	chr3R_14_7970001	chr3R_7970001	RAL-21
1664	chr3R	8090549	8090568	chr3R	8094046	8094065	297	10	3496	4.5	4.5	4.5	1.8	3516	chr3R	8090549	intergenic	CR44330 +	chr3R	8092307	intergenic	not near genes	chr3R	8094065	intergenic	CG7900 +	chr3R_10_8090001	chr3R_8090001	RAL-21
1665	chr3R	8094391	8094437	chr3R	8099716	8099743	Transpac	10	5323	4.0	5.5	4.8	1.7	5352	chr3R	8094391	intron	CG7900 +	chr3R	8097067	intron	CG7900 +	chr3R	8099743	intron	CG7900 +	chr3R_10_8095001	chr3R_8095001	RAL-21
1666	chr3R	8101755	8101785	chr3R	8104859	8104889	G2	7	3104	1.0	3.5	2.2	2.2	3134	chr3R	8101755	exon	CG7900 +	chr3R	8103322	intron	CG7900 +	chr3R	8104889	3` UTR	CG7900 +	chr3R_7_8100001	chr3R_8100001	RAL-21
1671	chr3R	8402985	8403036	chr3R	8412171	8412206	roo	8	9169	1.5	1.5	1.5	3.2	9221	chr3R	8402985	intron	CG45263 -	chr3R	8407596	intron	CG45263 -	chr3R	8412206	intron	CG45263 -	chr3R_8_8405001	chr3R_8405001	RAL-21
1677	chr3R	8570457	8570504	chr3R	8575113	8575159	HMS-Beagle	7	4652	1.5	2.0	1.8	2.5	4702	chr3R	8570457	intergenic	not near genes	chr3R	8572808	intergenic	not near genes	chr3R	8575159	intergenic	not near genes	chr3R_7_8570001	chr3R_8570001	RAL-21
1678	chr3R	8601752	8601789	chr3R	8610925	8610961	roo	9	9166	4.5	3.0	3.8	1.9	9209	chr3R	8601752	intron	5-HT2B +	chr3R	8606356	intron	5-HT2B +	chr3R	8610961	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	RAL-21
1679	chr3R	8601790	8601799	chr3R	8610921	8610972	roo	10	9159	3.5	2.5	3.0	2.5	9182	chr3R	8601790	intron	5-HT2B +	chr3R	8606381	intron	5-HT2B +	chr3R	8610972	intron	5-HT2B +	chr3R_10_8605001	chr3R_8605001	RAL-21
1681	chr3R	8707344	8707372	chr3R	8709801	8709833	jockey	8	2459	3.0	2.0	2.5	2.3	2489	chr3R	8707344	intergenic	not near genes	chr3R	8708588	intergenic	not near genes	chr3R	8709833	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	RAL-21
1685	chr3R	8894852	8894904	chr3R	8896028	8896080	1360	13	1171	2.0	2.5	2.2	4.1	1228	chr3R	8894852	intron	pyd -	chr3R	8895466	intron	pyd -	chr3R	8896080	intron	pyd -	chr3R_13_8895001	chr3R_8895001	RAL-21
1691	chr3R	9278772	9278806	chr3R	9284039	9284078	Rt1a	9	5271	5.5	4.0	4.8	1.6	5306	chr3R	9278772	intergenic	not near genes	chr3R	9281425	intergenic	not near genes	chr3R	9284078	intergenic	not near genes	chr3R_9_9280001	chr3R_9280001	RAL-21
1693	chr3R	9319585	9319601	chr3R	9320040	9320051	jockey	9	454	2.5	7.0	4.8	1.6	466	chr3R	9319585	intron	CG8861 -	chr3R	9319818	intron	CG8861 -	chr3R	9320051	intron	CG8861 -	chr3R_9_9315001	chr3R_9315001	RAL-21
1694	chr3R	9361804	9361808	chr3R	9362065	9362069	pogo	4	261	10.5	6.0	8.2	0.4	265	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361936	3` UTR	CG45050 +	chr3R	9362069	3` UTR	CG45050 +	chr3R_4_9360001	chr3R_9360001	RAL-21
1695	chr3R	9361810	9361844	chr3R	9362058	9362105	pogo	9	260	3.5	5.0	4.2	1.7	295	chr3R	9361810	3` UTR	CG45050 +	chr3R	9361958	3` UTR	CG45050 +	chr3R	9362105	3` UTR	CG45050 +	chr3R_9_9360001	chr3R_9360001	RAL-21
1700	chr3R	9699970	9700000	chr3R	9700066	9700109	1360	9	106	3.0	4.5	3.8	1.9	139	chr3R	9699970	intron	Unc-115a -	chr3R	9700040	intron	Unc-115a -	chr3R	9700109	intron	Unc-115a -	chr3R_9_9700001	chr3R_9700001	RAL-21
1706	chr3R	10231767	10231814	chr3R	10237364	10237396	mdg3	17	5591	5.5	3.0	4.2	3.3	5629	chr3R	10231767	intron	CG42795 +	chr3R	10234582	intron	CG42795 +	chr3R	10237396	intron	CG42795 +	chr3R_17_10230001	chr3R_10230001	RAL-21
1707	chr3R	10255361	10255373	chr3R	10260821	10260833	I-element	8	5460	8.5	3.5	6.0	1.1	5472	chr3R	10255361	3` UTR	Sirt6 -	chr3R	10258097	intron	Sirt6 -	chr3R	10260833	exon	Sirt6 -	chr3R_8_10255001	chr3R_10255001	RAL-21
1714	chr3R	10804163	10804208	chr3R	10811705	10811705	17.6	11	7546	2.5	4.5	3.5	2.4	7542	chr3R	10804163	intergenic	CG14692 -	chr3R	10807934	intergenic	not near genes	chr3R	10811705	3` UTR	CG14693 -	chr3R_11_10805001	chr3R_10805001	RAL-21
1720	chr3R	11065570	11065595	chr3R	11071244	11071269	297	4	5674	3.0	1.5	2.2	1.2	5699	chr3R	11065570	intergenic	not near genes	chr3R	11068420	intergenic	not near genes	chr3R	11071269	intergenic	not near genes	chr3R_4_11065001	chr3R_11065001	RAL-21
1726	chr3R	11247225	11247228	chr3R	11247326	11247329	INE-1	4	101	13.5	5.5	9.5	0.4	104	chr3R	11247225	intergenic	CG5214 +,CR43283 -	chr3R	11247277	intergenic	CR43283 -,CG5214 +	chr3R	11247329	intergenic	CR43283 -,CG5214 +	chr3R_4_11245001	chr3R_11245001	RAL-21
1729	chr3R	11379233	11379258	chr3R	11388407	11388433	roo	8	9175	4.0	6.0	5.0	1.3	9200	chr3R	11379233	intron	pros +	chr3R	11383833	intron	pros +	chr3R	11388433	intron	pros +	chr3R_8_11380001	chr3R_11380001	RAL-21
1740	chr3R	11841078	11841092	chr3R	11846269	11846300	BS	6	5204	2.0	5.0	3.5	1.3	5222	chr3R	11841078	intron	CG6959 -	chr3R	11843689	intron	CG6959 -	chr3R	11846300	intron	CG6959 -	chr3R_6_11840001	chr3R_11840001	RAL-21
1744	chr3R	11957839	11957877	chr3R	11958142	11958163	S-element	5	299	6.0	4.5	5.2	0.8	324	chr3R	11957839	intergenic	not near genes	chr3R	11958001	intergenic	not near genes	chr3R	11958163	intergenic	not near genes	chr3R_5_11955001	chr3R_11955001	RAL-21
1745	chr3R	12022864	12022916	chr3R	12025061	12025112	pogo	26	2194	4.0	3.0	3.5	5.8	2248	chr3R	12022864	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025112	intergenic	not near genes	chr3R_26_12020001	chr3R_12020001	RAL-21
1765	chr3R	12920140	12920182	chr3R	12925363	12925374	copia	5	5216	0.5	4.0	2.2	1.6	5234	chr3R	12920140	intron	beat-Vb +	chr3R	12922757	intron	beat-Vb +	chr3R	12925374	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	RAL-21
1774	chr3R	13135819	13135839	chr3R	13138004	13138024	pogo	8	2185	3.5	4.0	3.8	1.7	2205	chr3R	13135819	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136922	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138024	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_8_13135001	chr3R_13135001	RAL-21
1775	chr3R	13143060	13143066	chr3R	13148617	13148662	mdg3	4	5585	2.0	2.5	2.2	1.2	5602	chr3R	13143060	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145861	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148662	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13145001	chr3R_13145001	RAL-21
1776	chr3R	13314091	13314128	chr3R	13318887	13318936	Doc	4	4805	2.0	6.5	4.2	0.8	4845	chr3R	13314091	intergenic	not near genes	chr3R	13316514	intergenic	not near genes	chr3R	13318936	intergenic	CG45080 -	chr3R_4_13315001	chr3R_13315001	RAL-21
1779	chr3R	13517210	13517213	chr3R	13520047	13520047	jockey	5	2836	8.5	0.0	4.2	1.0	2837	chr3R	13517210	intergenic	not near genes	chr3R	13518628	intergenic	not near genes	chr3R	13520047	intergenic	not near genes	chr3R_5_13515001	chr3R_13515001	RAL-21
1780	chr3R	13517240	13517259	chr3R	13520045	13520096	jockey	7	2832	3.5	0.0	1.8	2.5	2856	chr3R	13517240	intergenic	not near genes	chr3R	13518668	intergenic	not near genes	chr3R	13520096	intergenic	not near genes	chr3R_7_13515001	chr3R_13515001	RAL-21
1790	chr3R	14021630	14021680	chr3R	14023465	14023517	S-element	20	1832	5.0	2.0	3.5	4.4	1887	chr3R	14021630	intron	rdx -	chr3R	14022574	intron	rdx -	chr3R	14023517	intron	rdx -	chr3R_20_14020001	chr3R_14020001	RAL-21
1798	chr3R	14180791	14180818	chr3R	14185576	14185603	F-element	12	4785	4.5	0.0	2.2	3.8	4812	chr3R	14180791	intron	Dop1R1 -	chr3R	14183197	intron	Dop1R1 -	chr3R	14185603	intron	Dop1R1 -	chr3R_12_14180001	chr3R_14180001	RAL-21
1816	chr3R	15059264	15059470	chr3R	15059478	15059577	BS	12	207	0.0	0.0	0.0	12.0	313	chr3R	15059264	intron	dpr9 -	chr3R	15059420	intron	dpr9 -	chr3R	15059577	intron	dpr9 -	chr3R_12_15055001	chr3R_15055001	RAL-21
1817	chr3R	15079791	15079839	chr3R	15080050	15080100	pogo	15	260	5.5	5.5	5.5	2.3	309	chr3R	15079791	3` UTR	CG6966 -	chr3R	15079946	3` UTR	CG6966 -	chr3R	15080100	3` UTR	CG6966 -	chr3R_15_15075001	chr3R_15075001	RAL-21
1818	chr3R	15102478	15102526	chr3R	15109753	15109801	412	13	7275	6.0	4.0	5.0	2.2	7323	chr3R	15102478	intron	CG42788 -	chr3R	15106140	intron	CG42788 -	chr3R	15109801	intron	CG42788 -	chr3R_13_15105001	chr3R_15105001	RAL-21
1821	chr3R	15132045	15132059	chr3R	15135125	15135129	Juan	11	3079	16.5	16.0	16.2	0.6	3084	chr3R	15132045	intergenic	CG42788 -	chr3R	15133587	intergenic	not near genes	chr3R	15135129	intergenic	CG6912 -	chr3R_11_15130001	chr3R_15130001	RAL-21
1822	chr3R	15132062	15132078	chr3R	15135115	15135158	Juan	8	3077	16.5	12.5	14.5	0.5	3096	chr3R	15132062	intergenic	CG42788 -	chr3R	15133610	intergenic	not near genes	chr3R	15135158	3` UTR	CG6912 -	chr3R_8_15130001	chr3R_15130001	RAL-21
1825	chr3R	15162529	15162543	chr3R	15167315	15167330	F-element	7	4786	12.0	6.5	9.2	0.7	4801	chr3R	15162529	intron	Gyc88E +	chr3R	15164930	intron	Gyc88E +	chr3R	15167330	intron	Gyc88E +	chr3R_7_15160001	chr3R_15160001	RAL-21
1832	chr3R	15601152	15601184	chr3R	15608692	15608720	412	5	7540	4.0	5.5	4.8	0.9	7568	chr3R	15601152	intergenic	not near genes	chr3R	15604936	intergenic	not near genes	chr3R	15608720	intergenic	not near genes	chr3R_5_15600001	chr3R_15600001	RAL-21
1833	chr3R	15618713	15618759	chr3R	15626207	15626253	blood	10	7490	2.5	3.0	2.8	2.6	7540	chr3R	15618713	intergenic	not near genes	chr3R	15622483	intergenic	not near genes	chr3R	15626253	intergenic	not near genes	chr3R_10_15620001	chr3R_15620001	RAL-21
1840	chr3R	15735224	15735237	chr3R	15739964	15739977	F-element	5	4740	1.5	5.5	3.5	1.1	4753	chr3R	15735224	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15739977	intergenic	not near genes	chr3R_5_15735001	chr3R_15735001	RAL-21
1854	chr3R	16756310	16756354	chr3R	16762520	16762542	diver	4	6190	1.5	3.0	2.2	1.2	6232	chr3R	16756310	intron	bxd -	chr3R	16759426	intron	bxd -	chr3R	16762542	intron	bxd -	chr3R_4_16755001	chr3R_16755001	RAL-21
1862	chr3R	17294667	17294698	chr3R	17295113	17295150	BS	4	451	3.0	0.0	1.5	1.6	483	chr3R	17294667	intergenic	not near genes	chr3R	17294908	intergenic	not near genes	chr3R	17295150	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-21
1864	chr3R	17346672	17346708	chr3R	17348255	17348291	F-element	10	1583	7.0	7.0	7.0	1.2	1619	chr3R	17346672	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348291	intron	beat-IIa -	chr3R_10_17345001	chr3R_17345001	RAL-21
1877	chr3R	17591272	17591320	chr3R	17591725	17591766	F-element	10	448	2.5	3.0	2.8	2.6	494	chr3R	17591272	intergenic	not near genes	chr3R	17591519	intergenic	not near genes	chr3R	17591766	intergenic	not near genes	chr3R_10_17590001	chr3R_17590001	RAL-21
1878	chr3R	17638308	17638344	chr3R	17638809	17638850	roo	11	504	6.5	5.0	5.8	1.6	542	chr3R	17638308	intron	CG43175 +	chr3R	17638579	intron	CG43175 +	chr3R	17638850	intron,intron	CG43175 +,CR45222 +	chr3R_11_17635001	chr3R_17635001	RAL-21
1885	chr3R	17925863	17925879	chr3R	17927317	17927366	hobo	6	1465	1.5	3.5	2.5	1.7	1503	chr3R	17925863	intron	cpo +	chr3R	17926614	intron	cpo +	chr3R	17927366	intron	cpo +	chr3R_6_17925001	chr3R_17925001	RAL-21
1896	chr3R	18606487	18606523	chr3R	18610739	18610775	F-element	8	4250	3.0	7.0	5.0	1.3	4288	chr3R	18606487	intron,intron	qin +,CG14304 -	chr3R	18608631	intron,intron	qin +,CG14304 -	chr3R	18610775	intron,intron	qin +,CG14304 -	chr3R_8_18605001	chr3R_18605001	RAL-21
1897	chr3R	18606524	18606533	chr3R	18610737	18610785	F-element	5	4244	2.0	7.0	4.5	0.9	4261	chr3R	18606524	intron,intron	qin +,CG14304 -	chr3R	18608654	intron,intron	qin +,CG14304 -	chr3R	18610785	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	RAL-21
1932	chr3R	20109517	20109562	chr3R	20114743	20114788	copia	11	5224	3.0	4.5	3.8	2.3	5271	chr3R	20109517	intergenic	not near genes	chr3R	20112152	intergenic	not near genes	chr3R	20114788	intergenic	CG10887 +	chr3R_11_20110001	chr3R_20110001	RAL-21
1933	chr3R	20156679	20156717	chr3R	20165869	20165907	roo	13	9190	2.5	6.5	4.5	2.4	9228	chr3R	20156679	intergenic	not near genes	chr3R	20161293	intergenic	not near genes	chr3R	20165907	intergenic	not near genes	chr3R_13_20160001	chr3R_20160001	RAL-21
1935	chr3R	20245269	20245298	chr3R	20248899	20248929	F-element	8	3631	4.5	1.0	2.8	2.1	3660	chr3R	20245269	3` UTR	Nlg4 +	chr3R	20247099	intergenic	not near genes	chr3R	20248929	intergenic	not near genes	chr3R_8_20245001	chr3R_20245001	RAL-21
1938	chr3R	20266502	20266546	chr3R	20272993	20273037	Burdock	9	6491	4.5	8.5	6.5	1.2	6535	chr3R	20266502	intron	cic +	chr3R	20269770	intron	cic +	chr3R	20273037	intron	cic +	chr3R_9_20265001	chr3R_20265001	RAL-21
1941	chr3R	20330968	20331013	chr3R	20331797	20331840	roo	15	829	1.0	0.5	0.8	8.3	872	chr3R	20330968	intergenic	Sirt2 +	chr3R	20331404	intergenic	Sirt2 +	chr3R	20331840	intergenic	not near genes	chr3R_15_20330001	chr3R_20330001	RAL-21
1944	chr3R	20512986	20513030	chr3R	20515709	20515753	opus	16	2721	4.5	4.0	4.2	3.1	2767	chr3R	20512986	intergenic	not near genes	chr3R	20514370	intergenic	not near genes	chr3R	20515753	intergenic	not near genes	chr3R_16_20510001	chr3R_20510001	RAL-21
1971	chr3R	21761137	21761153	chr3R	21768527	21768557	mdg1	5	7399	1.0	6.0	3.5	1.1	7420	chr3R	21761137	exon	CG42335 +	chr3R	21764847	intron	CG42335 +	chr3R	21768557	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-21
1978	chr3R	22239477	22239522	chr3R	22248556	22248590	roo	8	9074	3.5	1.5	2.5	2.3	9113	chr3R	22239477	intron	SKIP +	chr3R	22244034	intron	SKIP +	chr3R	22248590	intron	SKIP +	chr3R_8_22240001	chr3R_22240001	RAL-21
1981	chr3R	22450540	22450572	chr3R	22453182	22453209	NOF	7	2649	3.0	4.5	3.8	1.5	2669	chr3R	22450540	intron	CG34376 +	chr3R	22451874	intron	CG34376 +	chr3R	22453209	intron	CG34376 +	chr3R_7_22450001	chr3R_22450001	RAL-21
1990	chr3R	22881183	22881225	chr3R	22884909	22884950	Doc	4	3726	3.5	2.0	2.8	1.1	3767	chr3R	22881183	intergenic	not near genes	chr3R	22883066	intergenic	not near genes	chr3R	22884950	intergenic	not near genes	chr3R_4_22880001	chr3R_22880001	RAL-21
2000	chr3R	23558378	23558420	chr3R	23560179	23560218	Bari1	17	1798	3.0	3.5	3.2	4.0	1840	chr3R	23558378	intron	beat-IV +	chr3R	23559298	intron	beat-IV +	chr3R	23560218	intron	beat-IV +	chr3R_17_23555001	chr3R_23555001	RAL-21
2010	chr3R	23851067	23851086	chr3R	23858754	23858773	opus	11	7687	2.5	9.5	6.0	1.6	7706	chr3R	23851067	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858773	intergenic	not near genes	chr3R_11_23850001	chr3R_23850001	RAL-21
2014	chr3R	24072071	24072116	chr3R	24072527	24072570	jockey	5	449	4.0	1.5	2.8	1.3	499	chr3R	24072071	intron	4EHP -	chr3R	24072320	intron	4EHP -	chr3R	24072570	intron	4EHP -	chr3R_5_24070001	chr3R_24070001	RAL-21
2015	chr3R	24076900	24076943	chr3R	24078387	24078420	hobo	10	1485	3.5	3.0	3.2	2.4	1520	chr3R	24076900	intron	4EHP -	chr3R	24077660	intron	4EHP -	chr3R	24078420	intron	4EHP -	chr3R_10_24075001	chr3R_24075001	RAL-21
2018	chr3R	24207200	24207235	chr3R	24212296	24212330	flea	4	5093	6.5	4.5	5.5	0.6	5130	chr3R	24207200	intron	twin -	chr3R	24209765	intron	twin -	chr3R	24212330	intron	twin -	chr3R_4_24205001	chr3R_24205001	RAL-21
2025	chr3R	24493260	24493299	chr3R	24493508	24493548	BS	14	248	7.5	3.0	5.2	2.3	288	chr3R	24493260	intergenic	not near genes	chr3R	24493404	intergenic	not near genes	chr3R	24493548	intergenic	not near genes	chr3R_14_24490001	chr3R_24490001	RAL-21
2029	chr3R	24730072	24730098	chr3R	24732470	24732496	Doc	4	2396	7.0	1.0	4.0	0.8	2424	chr3R	24730072	intron	tok +	chr3R	24731284	intron	tok +	chr3R	24732496	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-21
2033	chr3R	24927111	24927133	chr3R	24931922	24931941	Doc	8	4810	4.5	1.0	2.8	2.1	4830	chr3R	24927111	intergenic	Trf4-2 +	chr3R	24929526	intergenic	not near genes	chr3R	24931941	intergenic	CG11771 +	chr3R_8_24925001	chr3R_24925001	RAL-21
2034	chr3R	24927134	24927151	chr3R	24931915	24931959	Doc	6	4800	2.0	1.0	1.5	2.4	4825	chr3R	24927134	intergenic	Trf4-2 +	chr3R	24929546	intergenic	not near genes	chr3R	24931959	intergenic	CG11771 +	chr3R_6_24925001	chr3R_24925001	RAL-21
2048	chr3R	25725807	25725859	chr3R	25734987	25735039	roo	16	9180	3.5	4.0	3.8	3.3	9232	chr3R	25725807	intron	LpR2 -	chr3R	25730423	intron	LpR2 -	chr3R	25735039	intron	LpR2 -	chr3R_16_25730001	chr3R_25730001	RAL-21
2068	chr3R	26376308	26376350	chr3R	26385487	26385530	roo	15	9175	3.0	5.0	4.0	3.0	9222	chr3R	26376308	intergenic	not near genes	chr3R	26380919	intergenic	not near genes	chr3R	26385530	intergenic	not near genes	chr3R_15_26380001	chr3R_26380001	RAL-21
2070	chr3R	26510492	26510533	chr3R	26519573	26519614	roo	12	9080	5.0	7.0	6.0	1.7	9122	chr3R	26510492	intron	plum -	chr3R	26515053	intron	plum -	chr3R	26519614	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	RAL-21
2073	chr3R	26558347	26558360	chr3R	26565656	26565687	Stalker4	4	7320	1.0	3.0	2.0	1.3	7340	chr3R	26558347	intron	scrib +	chr3R	26562017	intron	scrib +	chr3R	26565687	intron	scrib +	chr3R_4_26560001	chr3R_26560001	RAL-21
2076	chr3R	26642718	26642755	chr3R	26643124	26643169	jockey	10	413	4.0	1.5	2.8	2.6	451	chr3R	26642718	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643169	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	RAL-21
2079	chr3R	26810537	26810579	chr3R	26811042	26811084	roo	10	503	5.5	5.0	5.2	1.6	547	chr3R	26810537	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811084	intron	Tl +	chr3R_10_26810001	chr3R_26810001	RAL-21
2081	chr3R	27007387	27007425	chr3R	27016542	27016557	roo	8	9147	7.0	3.0	5.0	1.3	9170	chr3R	27007387	intron	RYa-R +	chr3R	27011972	intron	RYa-R +	chr3R	27016557	intron	RYa-R +	chr3R_8_27010001	chr3R_27010001	RAL-21
2086	chr3R	27140503	27140547	chr3R	27148123	27148167	412	14	7627	2.5	3.5	3.0	3.5	7664	chr3R	27140503	intron	CG6051 -	chr3R	27144335	intron	CG6051 -	chr3R	27148167	intron	CG6051 -	chr3R_14_27140001	chr3R_27140001	RAL-21
2094	chr3R	27342780	27342821	chr3R	27351381	27351422	Tirant	8	8600	2.0	4.0	3.0	2.0	8642	chr3R	27342780	intron	CG42534 +	chr3R	27347101	intron	CG42534 +	chr3R	27351422	intron	CG42534 +	chr3R_8_27345001	chr3R_27345001	RAL-21
2102	chr3R	27521138	27521185	chr3R	27530367	27530414	roo	10	9229	3.0	5.0	4.0	2.0	9276	chr3R	27521138	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530414	intron	CG12885 +	chr3R_10_27525001	chr3R_27525001	RAL-21
2104	chr3R	27725555	27725593	chr3R	27731017	27731055	I-element	9	5461	2.5	3.5	3.0	2.2	5500	chr3R	27725555	intergenic	not near genes	chr3R	27728305	intergenic	not near genes	chr3R	27731055	intergenic	not near genes	chr3R_9_27725001	chr3R_27725001	RAL-21
2107	chr3R	27856738	27856787	chr3R	27858241	27858298	hopper2	7	1500	2.5	1.0	1.8	2.5	1560	chr3R	27856738	intron	CG34353 -	chr3R	27857518	intron	CG34353 -	chr3R	27858298	intron	CG34353 -	chr3R_7_27855001	chr3R_27855001	RAL-21
2108	chr3R	27862939	27862987	chr3R	27868259	27868270	Transpac	10	5301	2.5	3.0	2.8	2.6	5331	chr3R	27862939	intron	CG34353 -	chr3R	27865604	intron	CG34353 -	chr3R	27868270	intron	CG34353 -	chr3R_10_27865001	chr3R_27865001	RAL-21
2109	chr3R	27875687	27875730	chr3R	27882757	27882805	297	15	7071	1.5	5.5	3.5	3.3	7118	chr3R	27875687	intron	CG34353 -	chr3R	27879246	intron	CG34353 -	chr3R	27882805	intron	CG34353 -	chr3R_15_27875001	chr3R_27875001	RAL-21
2110	chr3R	28068475	28068506	chr3R	28073937	28073965	I-element	7	5461	1.0	2.0	1.5	2.8	5490	chr3R	28068475	intron	CG34362 +	chr3R	28071220	intron	CG34362 +	chr3R	28073965	intron	CG34362 +	chr3R_7_28070001	chr3R_28070001	RAL-21
2113	chr3R	28173676	28173696	chr3R	28181126	28181146	mdg1	4	7449	4.5	4.0	4.2	0.8	7470	chr3R	28173676	intron	CG34354 +	chr3R	28177411	intron	CG34354 +	chr3R	28181146	intron	CG34354 +	chr3R_4_28175001	chr3R_28175001	RAL-21
2115	chr3R	28253343	28253350	chr3R	28255873	28255880	jockey	4	2530	3.0	3.0	3.0	1.0	2537	chr3R	28253343	intergenic	not near genes	chr3R	28254612	intergenic	not near genes	chr3R	28255880	intergenic	not near genes	chr3R_4_28250001	chr3R_28250001	RAL-21
2116	chr3R	28253351	28253365	chr3R	28255858	28255895	jockey	8	2521	2.0	1.5	1.8	2.9	2544	chr3R	28253351	intergenic	not near genes	chr3R	28254623	intergenic	not near genes	chr3R	28255895	intergenic	not near genes	chr3R_8_28250001	chr3R_28250001	RAL-21
2118	chr3R	28302087	28302125	chr3R	28302545	28302584	jockey	17	459	9.0	3.5	6.2	2.4	497	chr3R	28302087	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302584	intergenic	not near genes	chr3R_17_28300001	chr3R_28300001	RAL-21
2135	chr3R	28758266	28758282	chr3R	28763902	28763919	roo	5	5637	8.0	0.0	4.0	1.0	5653	chr3R	28758266	intergenic	aqrs -	chr3R	28761092	intergenic	not near genes	chr3R	28763919	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	RAL-21
2136	chr3R	28758313	28758318	chr3R	28771340	28771345	Stalker4	4	13027	3.5	0.0	1.8	1.4	13032	chr3R	28758313	intergenic	aqrs -	chr3R	28764829	intergenic	not near genes	chr3R	28771345	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-21
2137	chr3R	28792867	28792899	chr3R	28797977	28797996	jockey	5	5108	3.5	0.5	2.0	1.7	5129	chr3R	28792867	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28797996	intergenic	not near genes	chr3R_5_28795001	chr3R_28795001	RAL-21
2152	chr3R	29319810	29319847	chr3R	29320149	29320186	jockey	13	337	5.5	5.5	5.5	2.0	376	chr3R	29319810	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320186	intergenic	not near genes	chr3R_13_29315001	chr3R_29315001	RAL-21
2156	chr3R	29406601	29406648	chr3R	29407907	29407935	jockey	5	1301	0.0	3.5	1.8	1.8	1334	chr3R	29406601	intron	Ptp99A +	chr3R	29407268	intron	Ptp99A +	chr3R	29407935	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-21
2164	chr3R	29738247	29738293	chr3R	29739734	29739780	hobo	16	1486	3.0	3.0	3.0	4.0	1533	chr3R	29738247	intergenic	CG1969 +,CG7598 +	chr3R	29739014	intron	CG1969 +	chr3R	29739780	5` UTR	CG1969 +	chr3R_16_29735001	chr3R_29735001	RAL-21
2165	chr3R	29882001	29882053	chr3R	29891178	29891227	roo	20	9176	3.0	1.0	2.0	6.7	9226	chr3R	29882001	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891227	intron	CG31038 +	chr3R_20_29885001	chr3R_29885001	RAL-21
2166	chr3R	30084865	30084879	chr3R	30086327	30086353	hobo	4	1478	1.0	4.0	2.5	1.1	1488	chr3R	30084865	intron	sima +	chr3R	30085609	intron	sima +	chr3R	30086353	intron	sima +	chr3R_4_30085001	chr3R_30085001	RAL-21
2170	chr3R	30238741	30238789	chr3R	30239925	30239953	1360	11	1182	4.0	0.0	2.0	3.7	1212	chr3R	30238741	intergenic	not near genes	chr3R	30239347	intergenic	not near genes	chr3R	30239953	intergenic	not near genes	chr3R_11_30235001	chr3R_30235001	RAL-21
2174	chr3R	30375518	30375563	chr3R	30383163	30383168	412	14	7640	3.0	1.5	2.2	4.4	7650	chr3R	30375518	intergenic	not near genes	chr3R	30379343	intergenic	not near genes	chr3R	30383168	intergenic	not near genes	chr3R_14_30375001	chr3R_30375001	RAL-21
2175	chr3R	30396205	30396239	chr3R	30404491	30404525	roo	7	8285	2.5	5.0	3.8	1.5	8320	chr3R	30396205	intergenic	not near genes	chr3R	30400365	intergenic	not near genes	chr3R	30404525	5` UTR	CR45570 +	chr3R_7_30400001	chr3R_30400001	RAL-21
2178	chr3R	30480456	30480511	chr3R	30482944	30482998	jockey	11	2484	0.0	3.0	1.5	4.4	2542	chr3R	30480456	intron	PH4alphaEFB +	chr3R	30481727	intron	PH4alphaEFB +	chr3R	30482998	intron	PH4alphaEFB +	chr3R_11_30480001	chr3R_30480001	RAL-21
2187	chr3R	30679499	30679550	chr3R	30686988	30687037	blood	7	7482	2.5	2.5	2.5	2.0	7538	chr3R	30679499	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687037	intergenic	not near genes	chr3R_7_30680001	chr3R_30680001	RAL-21
2190	chr3R	30818792	30818830	chr3R	30820377	30820415	1360	11	1584	3.0	4.5	3.8	2.3	1623	chr3R	30818792	intron	cindr +	chr3R	30819604	intron	cindr +	chr3R	30820415	intron	cindr +	chr3R_11_30815001	chr3R_30815001	RAL-21
2198	chr3R	31074212	31074258	chr3R	31081830	31081876	springer	13	7618	3.0	1.0	2.0	4.3	7664	chr3R	31074212	intron	Sox100B +	chr3R	31078044	intron	Sox100B +	chr3R	31081876	intron	Sox100B +	chr3R_13_31075001	chr3R_31075001	RAL-21
2202	chr3R	31279394	31279405	chr3R	31285570	31285575	diver	4	6192	0.5	3.0	1.8	1.4	6181	chr3R	31279394	intergenic	not near genes	chr3R	31282484	intergenic	not near genes	chr3R	31285575	intergenic	not near genes	chr3R_4_31280001	chr3R_31280001	RAL-21
2204	chr3R	31413085	31413113	chr3R	31418305	31418318	copia	6	5206	3.0	3.0	3.0	1.5	5233	chr3R	31413085	intron	Gprk2 +	chr3R	31415702	intron	Gprk2 +	chr3R	31418318	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	RAL-21
2220	chr3R	31997974	31998024	chr3R	32005464	32005514	blood	5	7484	2.5	3.5	3.0	1.2	7540	chr3R	31997974	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005514	intron	heph -	chr3R_5_32000001	chr3R_32000001	RAL-21
2225	chr4	76485	76514	chr4	81948	81977	I-element	6	5459	4.5	3.5	4.0	1.2	5492	chr4	76485	intron	pan +	chr4	79231	intron	pan +	chr4	81977	intron	pan +	chr4_6_75001	chr4_75001	RAL-21
2227	chr4	319983	320016	chr4	328165	328212	Stalker2	12	8190	4.0	4.5	4.2	2.3	8229	chr4	319983	3` UTR	CG32850 +	chr4	324098	intron	CG32850 +	chr4	328212	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_12_320001	chr4_320001	RAL-21
2229	chr4	662166	662201	chr4	662830	662866	INE-1	12	663	3.0	5.0	4.0	2.4	700	chr4	662166	intron	gw -	chr4	662516	intron	gw -	chr4	662866	5` UTR	gw -	chr4_12_660001	chr4_660001	RAL-21
2230	chr4	671585	671634	chr4	680188	680227	Tirant	6	8597	3.5	4.0	3.8	1.2	8642	chr4	671585	intron	CG11360 +	chr4	675906	intron	CG11360 +	chr4	680227	intron	CG11360 +	chr4_6_675001	chr4_675001	RAL-21
2232	chrX	295839	295877	chrX	303479	303517	412	5	7639	1.5	5.5	3.5	1.1	7678	chrX	295839	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303517	intron	CG3777 +	chrX_5_295001	chrX_295001	RAL-21
2233	chrX	318459	318498	chrX	323563	323603	flea	12	5105	3.0	5.5	4.2	2.3	5144	chrX	318459	intron,intron	CG3777 +,CG32816 -	chrX	321031	intron,intron	CG3777 +,CG32816 -	chrX	323603	intron,intron	CG3777 +,CG32816 -	chrX_12_320001	chrX_320001	RAL-21
2234	chrX	428402	428451	chrX	434607	434656	3S18	15	6204	4.5	3.0	3.8	3.1	6254	chrX	428402	intron	CG32816 -	chrX	431529	intron	CG32816 -	chrX	434656	intron	CG32816 -	chrX_15_430001	chrX_430001	RAL-21
2237	chrX	812250	812294	chrX	817900	817944	297	20	5647	4.0	4.5	4.2	3.8	5694	chrX	812250	intron	CG43867 -	chrX	815097	intron	CG43867 -	chrX	817944	intron	CG43867 -	chrX_20_815001	chrX_815001	RAL-21
2238	chrX	827584	827595	chrX	835395	835397	roo	4	7809	5.0	3.5	4.2	0.8	7813	chrX	827584	intron	CG43867 -	chrX	831490	intron	CG43867 -	chrX	835397	intron	CG43867 -	chrX_4_830001	chrX_830001	RAL-21
2239	chrX	906693	906729	chrX	908502	908528	S-element	10	1806	2.5	8.5	5.5	1.5	1835	chrX	906693	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908528	intron	CG43867 -	chrX_10_905001	chrX_905001	RAL-21
2243	chrX	1063737	1063750	chrX	1072550	1072563	roo	7	8813	6.5	4.0	5.2	1.1	8826	chrX	1063737	intron	CR44779 +	chrX	1068150	intron	CR44779 +	chrX	1072563	intron	CR44779 +	chrX_7_1065001	chrX_1065001	RAL-21
2248	chrX	1357775	1357795	chrX	1367952	1367959	Doc	6	10183	2.5	3.5	3.0	1.5	10184	chrX	1357775	intergenic	png -	chrX	1362867	intergenic	not near genes	chrX	1367959	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-21
2251	chrX	1930530	1930570	chrX	1938107	1938133	opus	13	7582	4.5	3.5	4.0	2.6	7603	chrX	1930530	intergenic	CG11596 +	chrX	1934332	intergenic	not near genes	chrX	1938133	3` UTR	CG3857 -	chrX_13_1930001	chrX_1930001	RAL-21
2255	chrX	2610369	2610381	chrX	2617506	2617506	HMS-Beagle	6	7135	5.5	4.5	5.0	1.0	7137	chrX	2610369	intergenic	CG8636 -	chrX	2613938	intergenic	not near genes	chrX	2617506	intergenic	Tsp3A -	chrX_6_2610001	chrX_2610001	RAL-21
2256	chrX	2664381	2664414	chrX	2665531	2665560	1360	9	1157	3.0	5.0	4.0	1.8	1179	chrX	2664381	intron	sgg +	chrX	2664970	intron	sgg +	chrX	2665560	intron	sgg +	chrX_9_2660001	chrX_2660001	RAL-21
2257	chrX	2844882	2844921	chrX	2852312	2852351	mdg1	8	7429	5.0	0.5	2.8	2.1	7469	chrX	2844882	intron	kirre +	chrX	2848616	intron	kirre +	chrX	2852351	intron	kirre +	chrX_8_2845001	chrX_2845001	RAL-21
2261	chrX	3058006	3058044	chrX	3058267	3058305	pogo	5	260	4.0	3.5	3.8	1.0	299	chrX	3058006	intron	kirre +	chrX	3058156	intron	kirre +	chrX	3058305	intron	kirre +	chrX_5_3055001	chrX_3055001	RAL-21
2262	chrX	3075613	3075650	chrX	3080942	3080977	Transpac	4	5327	1.0	0.0	0.5	2.7	5364	chrX	3075613	intron	kirre +	chrX	3078295	intron	kirre +	chrX	3080977	intron	kirre +	chrX_4_3075001	chrX_3075001	RAL-21
2263	chrX	3218501	3218515	chrX	3227670	3227684	roo	5	9169	2.0	4.0	3.0	1.2	9183	chrX	3218501	intron	dnc +	chrX	3223092	intron	dnc +	chrX	3227684	intron	dnc +	chrX_5_3220001	chrX_3220001	RAL-21
2268	chrX	3415022	3415050	chrX	3421201	3421255	3S18	4	6190	1.5	0.5	1.0	2.0	6233	chrX	3415022	intron,intron	CR44999 +,CG12535 -	chrX	3418138	intron,intron	CR44999 +,CG12535 -	chrX	3421255	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-21
2269	chrX	3493082	3493114	chrX	3502261	3502274	roo	7	9175	2.0	0.5	1.2	3.2	9192	chrX	3493082	intron,intron	CR44999 +,Gas8 -	chrX	3497678	intron,intron	CR44999 +,Gas8 -	chrX	3502274	intron,intron	CR44999 +,Gas8 -	chrX_7_3495001	chrX_3495001	RAL-21
2274	chrX	3597529	3597567	chrX	3619717	3619730	roo	6	22182	3.0	1.5	2.2	1.9	22201	chrX	3597529	intron	AstA-R1 +	chrX	3608630	intron	AstA-R1 +	chrX	3619730	intron	AstA-R1 +	chrX_6_3605001	chrX_3605001	RAL-21
2278	chrX	3726751	3726765	chrX	3730165	3730172	NOF	5	3412	3.5	0.5	2.0	1.7	3421	chrX	3726751	intron	tlk +	chrX	3728462	intron	tlk +	chrX	3730172	intron	tlk +	chrX_5_3725001	chrX_3725001	RAL-21
2281	chrX	3986845	3986895	chrX	3994498	3994515	412	11	7648	1.5	3.0	2.2	3.4	7670	chrX	3986845	intergenic	not near genes	chrX	3990680	intergenic	not near genes	chrX	3994515	intergenic	not near genes	chrX_11_3990001	chrX_3990001	RAL-21
2289	chrX	4700381	4700425	chrX	4700740	4700788	jockey	14	362	4.0	4.0	4.0	2.8	407	chrX	4700381	3` UTR	ctp +	chrX	4700584	3` UTR	ctp +	chrX	4700788	3` UTR	ctp +	chrX_14_4700001	chrX_4700001	RAL-21
2290	chrX	4763239	4763284	chrX	4763747	4763770	Stalker4	9	504	2.0	4.0	3.0	2.2	531	chrX	4763239	intergenic	not near genes	chrX	4763504	intergenic	not near genes	chrX	4763770	intergenic	not near genes	chrX_9_4760001	chrX_4760001	RAL-21
2291	chrX	4792364	4792391	chrX	4792817	4792835	jockey	5	451	4.5	3.5	4.0	1.0	471	chrX	4792364	intergenic	not near genes	chrX	4792600	intergenic	not near genes	chrX	4792835	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-21
2294	chrX	4990027	4990060	chrX	4997261	4997294	roo	8	7234	4.5	4.0	4.2	1.5	7267	chrX	4990027	intron	CR44833 -	chrX	4993660	intron	CR44833 -	chrX	4997294	intron	CR44833 -	chrX_8_4990001	chrX_4990001	RAL-21
2296	chrX	5096258	5096293	chrX	5103843	5103878	springer	7	7585	0.5	5.0	2.8	1.8	7620	chrX	5096258	intron,intron	CG15465 +,rg +	chrX	5100068	intron,intron	CG15465 +,rg +	chrX	5103878	intron,intron	CG15465 +,rg +	chrX_7_5100001	chrX_5100001	RAL-21
2300	chrX	5338688	5338706	chrX	5339961	5339975	jockey	6	1271	2.0	0.5	1.2	2.7	1287	chrX	5338688	intergenic	not near genes	chrX	5339332	intergenic	not near genes	chrX	5339975	intergenic	SK +	chrX_6_5335001	chrX_5335001	RAL-21
2306	chrX	5883789	5883837	chrX	5884050	5884095	pogo	11	261	4.0	3.5	3.8	2.3	306	chrX	5883789	intron	CR45668 -	chrX	5883942	intron	CR45668 -	chrX	5884095	intron	CR45668 -	chrX_11_5880001	chrX_5880001	RAL-21
2307	chrX	5884156	5884167	chrX	5884412	5884428	pogo	5	260	7.5	5.0	6.2	0.7	272	chrX	5884156	intron	CR45668 -	chrX	5884292	intron	CR45668 -	chrX	5884428	intron	CR45668 -	chrX_5_5880001	chrX_5880001	RAL-21
2308	chrX	5884172	5884192	chrX	5884402	5884447	pogo	7	254	4.0	4.0	4.0	1.4	275	chrX	5884172	intron	CR45668 -	chrX	5884310	intron	CR45668 -	chrX	5884447	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-21
2311	chrX	6171583	6171614	chrX	6179036	6179039	Quasimodo	6	7445	2.5	4.5	3.5	1.3	7456	chrX	6171583	intron	Ca-alpha1T -	chrX	6175311	intron	Ca-alpha1T -	chrX	6179039	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	RAL-21
2314	chrX	6335223	6335239	chrX	6337750	6337769	Tirant	4	2529	0.0	7.0	3.5	0.9	2546	chrX	6335223	intergenic	not near genes	chrX	6336496	intergenic	not near genes	chrX	6337769	5` UTR	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-21
2317	chrX	6392865	6392895	chrX	6397644	6397679	Doc	9	4783	2.0	3.0	2.5	2.6	4814	chrX	6392865	intergenic	not near genes	chrX	6395272	intergenic	not near genes	chrX	6397679	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-21
2321	chrX	6605458	6605505	chrX	6608500	6608504	Burdock	10	3037	4.0	5.5	4.8	1.7	3046	chrX	6605458	intron	pigs +	chrX	6606981	intron	pigs +	chrX	6608504	intron	pigs +	chrX_10_6605001	chrX_6605001	RAL-21
2327	chrX	7023586	7023629	chrX	7030991	7031037	Tabor	7	7408	3.5	2.0	2.8	1.8	7451	chrX	7023586	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031037	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-21
2328	chrX	7125242	7125274	chrX	7134407	7134453	roo	4	9171	0.0	2.5	1.2	1.8	9211	chrX	7125242	intergenic	not near genes	chrX	7129848	intergenic	not near genes	chrX	7134453	intergenic	not near genes	chrX_4_7125001	chrX_7125001	RAL-21
2332	chrX	7702886	7702921	chrX	7703345	7703380	jockey	12	458	4.5	4.0	4.2	2.3	494	chrX	7702886	intron	CHES-1-like -	chrX	7703133	intron	CHES-1-like -	chrX	7703380	intron	CHES-1-like -	chrX_12_7700001	chrX_7700001	RAL-21
2336	chrX	7845719	7845742	chrX	7847215	7847253	hopper2	4	1507	1.5	4.0	2.8	1.1	1534	chrX	7845719	intergenic	not near genes	chrX	7846486	intergenic	not near genes	chrX	7847253	intergenic	not near genes	chrX_4_7845001	chrX_7845001	RAL-21
2338	chrX	8031411	8031452	chrX	8035740	8035781	Juan	6	4329	7.5	9.0	8.2	0.7	4370	chrX	8031411	intergenic	not near genes	chrX	8033596	intergenic	not near genes	chrX	8035781	3` UTR	CG2233 -	chrX_6_8030001	chrX_8030001	RAL-21
2343	chrX	8922318	8922350	chrX	8922772	8922794	jockey	7	451	3.0	2.0	2.5	2.0	476	chrX	8922318	intron	rdgA +	chrX	8922556	intron	rdgA +	chrX	8922794	intron	rdgA +	chrX_7_8920001	chrX_8920001	RAL-21
2344	chrX	8948742	8948782	chrX	8956272	8956302	roo	9	7528	4.0	2.5	3.2	2.1	7560	chrX	8948742	intron	rdgA +	chrX	8952522	intron	rdgA +	chrX	8956302	intron	rdgA +	chrX_9_8950001	chrX_8950001	RAL-21
2349	chrX	9575783	9575810	chrX	9576118	9576141	mdg3	11	338	2.5	3.5	3.0	2.8	358	chrX	9575783	intron,exon	CG32699 -,CG42395 -	chrX	9575962	intron,intron	CG32699 -,CG42395 -	chrX	9576141	intron,5` UTR	CG32699 -,CG42395 -	chrX_11_9575001	chrX_9575001	RAL-21
2354	chrX	10138197	10138243	chrX	10145721	10145767	412	13	7522	3.0	3.5	3.2	3.1	7570	chrX	10138197	intron,intron	RhoU +,CR44894 -	chrX	10141982	intron,intron	RhoU +,CR44894 -	chrX	10145767	intron,intron	RhoU +,CR44894 -	chrX_13_10140001	chrX_10140001	RAL-21
2357	chrX	10267296	10267331	chrX	10276466	10276501	roo	9	9169	0.5	1.5	1.0	4.5	9205	chrX	10267296	3` UTR	alpha-Man-I -	chrX	10271898	intron	alpha-Man-I -	chrX	10276501	3` UTR	alpha-Man-I -	chrX_9_10270001	chrX_10270001	RAL-21
2360	chrX	10348779	10348826	chrX	10356364	10356411	springer	8	7582	3.0	2.5	2.8	2.1	7632	chrX	10348779	intergenic	snoRNA:U3:9B +	chrX	10352595	intergenic	not near genes	chrX	10356411	intergenic	l(1)G0289 -	chrX_8_10350001	chrX_10350001	RAL-21
2366	chrX	10550838	10550887	chrX	10552325	10552346	hobo	9	1479	2.5	0.5	1.5	3.6	1508	chrX	10550838	intron	spri -	chrX	10551592	intron	spri -	chrX	10552346	intron	spri -	chrX_9_10550001	chrX_10550001	RAL-21
2367	chrX	10686030	10686082	chrX	10691187	10691239	roo	12	5155	3.0	2.0	2.5	3.4	5209	chrX	10686030	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691239	intron	X11Lbeta +	chrX_12_10685001	chrX_10685001	RAL-21
2370	chrX	11095986	11096024	chrX	11103108	11103114	HMS-Beagle	9	7116	3.0	2.0	2.5	2.6	7128	chrX	11095986	intergenic	not near genes	chrX	11099550	intergenic	not near genes	chrX	11103114	intron	CG42249 +	chrX_9_11095001	chrX_11095001	RAL-21
2374	chrX	11268567	11268590	chrX	11270069	11270073	hopper2	4	1501	0.5	2.5	1.5	1.6	1506	chrX	11268567	intron	CG44422 -	chrX	11269320	intron	CG44422 -	chrX	11270073	intron	CG44422 -	chrX_4_11265001	chrX_11265001	RAL-21
2376	chrX	11535023	11535040	chrX	11541513	11541530	Burdock	9	6490	5.5	2.0	3.8	1.9	6507	chrX	11535023	intron	Drak +	chrX	11538276	intron	Drak +	chrX	11541530	intron	Drak +	chrX_9_11535001	chrX_11535001	RAL-21
2377	chrX	11571439	11571482	chrX	11571700	11571743	pogo	12	260	7.0	4.0	5.5	1.8	304	chrX	11571439	3` UTR	Kmn1 -	chrX	11571591	3` UTR	Kmn1 -	chrX	11571743	3` UTR	Kmn1 -	chrX_12_11570001	chrX_11570001	RAL-21
2378	chrX	11633395	11633441	chrX	11640469	11640501	297	11	7072	5.0	5.0	5.0	1.8	7106	chrX	11633395	intron	Ptp10D +	chrX	11636948	intron	Ptp10D +	chrX	11640501	intron	Ptp10D +	chrX_11_11635001	chrX_11635001	RAL-21
2379	chrX	11645116	11645135	chrX	11648300	11648325	NOF	5	3185	7.0	5.5	6.2	0.7	3209	chrX	11645116	intron	Ptp10D +	chrX	11646720	intron	Ptp10D +	chrX	11648325	intron	Ptp10D +	chrX_5_11645001	chrX_11645001	RAL-21
2385	chrX	12168127	12168166	chrX	12173589	12173613	I-element	5	5459	4.5	0.5	2.5	1.4	5486	chrX	12168127	intron	Ten-a +	chrX	12170870	intron	Ten-a +	chrX	12173613	intron	Ten-a +	chrX_5_12170001	chrX_12170001	RAL-21
2388	chrX	12381842	12381902	chrX	12385775	12385824	flea	4	3928	0.0	2.0	1.0	2.0	3982	chrX	12381842	intergenic	not near genes	chrX	12383833	intergenic	not near genes	chrX	12385824	intergenic	not near genes	chrX_4_12380001	chrX_12380001	RAL-21
2410	chrX	13401465	13401511	chrX	13401836	13401883	jockey	7	372	1.5	1.5	1.5	2.8	418	chrX	13401465	intergenic	CG1673 +,CG12725 -	chrX	13401674	intergenic	CG12725 -,CG1673 +	chrX	13401883	3` UTR	CG12725 -	chrX_7_13400001	chrX_13400001	RAL-21
2412	chrX	13429453	13429466	chrX	13430622	13430635	jockey	4	1169	5.5	4.5	5.0	0.7	1182	chrX	13429453	intergenic	not near genes	chrX	13430044	intergenic	not near genes	chrX	13430635	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-21
2413	chrX	13429468	13429493	chrX	13430618	13430655	jockey	9	1162	3.0	4.0	3.5	2.0	1187	chrX	13429468	intergenic	not near genes	chrX	13430062	intergenic	not near genes	chrX	13430655	intergenic	not near genes	chrX_9_13430001	chrX_13430001	RAL-21
2414	chrX	13463627	13463676	chrX	13469223	13469273	mdg3	12	5597	1.0	3.5	2.2	3.8	5646	chrX	13463627	intron	Neto +	chrX	13466450	intron	Neto +	chrX	13469273	intron	Neto +	chrX_12_13465001	chrX_13465001	RAL-21
2418	chrX	13937977	13937998	chrX	13941251	13941282	I-element	5	3282	4.5	2.5	3.5	1.1	3305	chrX	13937977	intron	mamo -	chrX	13939630	intron	mamo -	chrX	13941282	intron	mamo -	chrX_5_13935001	chrX_13935001	RAL-21
2420	chrX	14157573	14157595	chrX	14163250	14163272	297	4	5677	5.0	1.5	3.2	1.0	5699	chrX	14157573	intergenic	not near genes	chrX	14160422	intergenic	not near genes	chrX	14163272	intergenic	not near genes	chrX_4_14160001	chrX_14160001	RAL-21
2423	chrX	14416293	14416332	chrX	14421081	14421119	F-element	6	4788	5.0	7.0	6.0	0.9	4826	chrX	14416293	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421119	intron	dpr8 +	chrX_6_14415001	chrX_14415001	RAL-21
2427	chrX	14636459	14636491	chrX	14641905	14641952	I-element	6	5454	2.0	0.0	1.0	3.0	5493	chrX	14636459	intron	NetA -	chrX	14639206	intron	NetA -	chrX	14641952	intron	NetA -	chrX_6_14635001	chrX_14635001	RAL-21
2429	chrX	14778021	14778051	chrX	14782835	14782868	Doc	8	4816	6.5	5.5	6.0	1.1	4847	chrX	14778021	intergenic	CG5347 +	chrX	14780444	intergenic	not near genes	chrX	14782868	intergenic	Ag5r2 -	chrX_8_14780001	chrX_14780001	RAL-21
2431	chrX	14818748	14818792	chrX	14823971	14824014	copia	8	5220	3.0	4.5	3.8	1.7	5266	chrX	14818748	intron	rut -	chrX	14821381	intron	rut -	chrX	14824014	intron	rut -	chrX_8_14820001	chrX_14820001	RAL-21
2433	chrX	14936849	14936885	chrX	14946126	14946162	roo	7	9277	6.5	4.5	5.5	1.1	9313	chrX	14936849	intron	pdgy -	chrX	14941506	intron	pdgy -	chrX	14946162	intron	pdgy -	chrX_7_14940001	chrX_14940001	RAL-21
2436	chrX	15273707	15273737	chrX	15274882	15274894	1360	6	1178	1.5	4.0	2.8	1.6	1187	chrX	15273707	intergenic	not near genes	chrX	15274300	intergenic	not near genes	chrX	15274894	intergenic	not near genes	chrX_6_15270001	chrX_15270001	RAL-21
2438	chrX	15413049	15413080	chrX	15417349	15417402	Juan	6	4310	3.0	1.5	2.2	1.9	4353	chrX	15413049	intron	Cngl -	chrX	15415226	intron	Cngl -	chrX	15417402	intron	Cngl -	chrX_6_15415001	chrX_15415001	RAL-21
2439	chrX	15421910	15421945	chrX	15423435	15423475	pogo	5	1530	3.0	3.0	3.0	1.2	1565	chrX	15421910	intron	Cngl -	chrX	15422692	intron	Cngl -	chrX	15423475	intron	Cngl -	chrX_5_15420001	chrX_15420001	RAL-21
2447	chrX	16222761	16222807	chrX	16231126	16231177	roo	13	8364	1.5	2.0	1.8	4.6	8416	chrX	16222761	intergenic	not near genes	chrX	16226969	intergenic	not near genes	chrX	16231177	intergenic	not near genes	chrX_13_16225001	chrX_16225001	RAL-21
2449	chrX	16340647	16340697	chrX	16349824	16349874	roo	13	9177	3.5	5.5	4.5	2.4	9227	chrX	16340647	intergenic	Dsp1 +	chrX	16345260	intergenic	not near genes	chrX	16349874	intergenic	sl +	chrX_13_16345001	chrX_16345001	RAL-21
2452	chrX	16492625	16492673	chrX	16498222	16498270	mdg3	11	5597	4.5	2.0	3.2	2.6	5645	chrX	16492625	intron	para -	chrX	16495448	intron	para -	chrX	16498270	exon	para -	chrX_11_16495001	chrX_16495001	RAL-21
2461	chrX	17057924	17057965	chrX	17058185	17058226	pogo	8	258	2.0	2.5	2.2	2.5	302	chrX	17057924	intron	CG45002 -	chrX	17058075	intron	CG45002 -	chrX	17058226	intron	CG45002 -	chrX_8_17055001	chrX_17055001	RAL-21
2464	chrX	17195189	17195229	chrX	17200295	17200330	flea	14	5103	3.5	4.0	3.8	2.9	5141	chrX	17195189	3` UTR	baz +	chrX	17197760	3` UTR	baz +	chrX	17200330	3` UTR	baz +	chrX_14_17195001	chrX_17195001	RAL-21
2481	chrX	18194050	18194075	chrX	18194604	18194630	BS	5	555	3.5	3.5	3.5	1.1	580	chrX	18194050	intron	Frq2 +	chrX	18194340	intron	Frq2 +	chrX	18194630	intron	Frq2 +	chrX_5_18190001	chrX_18190001	RAL-21
2482	chrX	18194076	18194104	chrX	18194599	18194647	BS	8	547	1.0	2.5	1.8	2.9	571	chrX	18194076	intron	Frq2 +	chrX	18194362	intron	Frq2 +	chrX	18194647	intron	Frq2 +	chrX_8_18190001	chrX_18190001	RAL-21
2488	chrX	18429489	18429500	chrX	18434819	18434826	Transpac	6	5330	6.5	4.0	5.2	1.0	5337	chrX	18429489	intergenic	not near genes	chrX	18432158	intergenic	not near genes	chrX	18434826	intergenic	not near genes	chrX_6_18430001	chrX_18430001	RAL-21
2489	chrX	18429502	18429520	chrX	18434816	18434851	Transpac	5	5328	2.5	3.5	3.0	1.2	5349	chrX	18429502	intergenic	not near genes	chrX	18432176	intergenic	not near genes	chrX	18434851	intergenic	not near genes	chrX_5_18430001	chrX_18430001	RAL-21
2491	chrX	18555378	18555406	chrX	18556919	18556927	transib2	7	1536	0.0	6.0	3.0	1.8	1549	chrX	18555378	intron	Bx +	chrX	18556152	intron	Bx +	chrX	18556927	intron	Bx +	chrX_7_18555001	chrX_18555001	RAL-21
2496	chrX	18957052	18957086	chrX	18965737	18965771	roo	6	8684	3.0	1.5	2.2	1.9	8719	chrX	18957052	intron	CG43759 +	chrX	18961412	intron	CG43759 +	chrX	18965771	intron	CG43759 +	chrX_6_18960001	chrX_18960001	RAL-21
2499	chrX	19060396	19060437	chrX	19065200	19065241	Doc	11	4804	2.5	6.5	4.5	2.0	4845	chrX	19060396	intron	CG14190 +	chrX	19062818	intron	CG14190 +	chrX	19065241	intron	CG14190 +	chrX_11_19060001	chrX_19060001	RAL-21
2502	chrX	19136540	19136580	chrX	19143480	19143498	412	4	6934	1.0	0.5	0.8	2.2	6958	chrX	19136540	intergenic	not near genes	chrX	19140019	intergenic	not near genes	chrX	19143498	3` UTR	RhoGAP18B -	chrX_4_19140001	chrX_19140001	RAL-21
2506	chrX	19356979	19356985	chrX	19358440	19358446	NOF	4	1461	4.5	0.5	2.5	1.1	1467	chrX	19356979	intron	kek5 +	chrX	19357712	intron	kek5 +	chrX	19358446	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-21
2507	chrX	19356991	19357020	chrX	19358432	19358499	NOF	4	1460	3.0	0.5	1.8	1.4	1508	chrX	19356991	intron	kek5 +	chrX	19357745	intron	kek5 +	chrX	19358499	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-21
2508	chrX	19380167	19380184	chrX	19380428	19380445	pogo	6	261	3.0	9.0	6.0	0.9	278	chrX	19380167	intron	kek5 +	chrX	19380306	intron	kek5 +	chrX	19380445	intron	kek5 +	chrX_6_19380001	chrX_19380001	RAL-21
2513	chrX	19710064	19710086	chrX	19711868	19711892	S-element	6	1805	2.5	3.0	2.8	1.6	1828	chrX	19710064	intron	meso18E -	chrX	19710978	intron	meso18E -	chrX	19711892	intron	meso18E -	chrX_6_19710001	chrX_19710001	RAL-21
2531	chrX	20504108	20504155	chrX	20505648	20505694	transib2	7	1535	6.0	1.5	3.8	1.5	1586	chrX	20504108	intron	RhoGAP19D -	chrX	20504901	intron	RhoGAP19D -	chrX	20505694	intron	RhoGAP19D -	chrX_7_20500001	chrX_20500001	RAL-21
2541	chrX	20836709	20836733	chrX	20844331	20844352	roo	4	7621	7.0	2.0	4.5	0.7	7643	chrX	20836709	intron	shakB -	chrX	20840530	intron	shakB -	chrX	20844352	intron	shakB -	chrX_4_20840001	chrX_20840001	RAL-21
2542	chrX	20836742	20836754	chrX	20844329	20844376	roo	5	7614	5.0	2.0	3.5	1.1	7634	chrX	20836742	intron	shakB -	chrX	20840559	intron	shakB -	chrX	20844376	intron	shakB -	chrX_5_20840001	chrX_20840001	RAL-21
2543	chrX	20940704	20940729	chrX	20942193	20942217	hobo	5	1489	3.0	3.5	3.2	1.2	1513	chrX	20940704	intergenic	not near genes	chrX	20941460	intergenic	not near genes	chrX	20942217	intergenic	not near genes	chrX_5_20940001	chrX_20940001	RAL-21
2544	chrX	20956991	20956994	chrX	20962452	20962456	I-element	5	5462	5.5	6.0	5.8	0.7	5465	chrX	20956991	intergenic	not near genes	chrX	20959724	intergenic	not near genes	chrX	20962456	intergenic	Ser6 -	chrX_5_20955001	chrX_20955001	RAL-21
2548	chrX	21061873	21061897	chrX	21062378	21062391	roo	9	503	3.5	7.5	5.5	1.4	518	chrX	21061873	intron	bves +	chrX	21062132	intron	bves +	chrX	21062391	intron,3` UTR	bves +,CG32512 -	chrX_9_21060001	chrX_21060001	RAL-21
2550	chrX	21086112	21086158	chrX	21087161	21087207	jockey	7	1049	3.5	4.0	3.8	1.5	1095	chrX	21086112	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087207	intergenic	not near genes	chrX_7_21085001	chrX_21085001	RAL-21
2562	chrX	21458683	21458718	chrX	21464139	21464173	Ivk	9	5456	4.5	6.5	5.5	1.4	5490	chrX	21458683	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464173	intergenic	not near genes	chrX_9_21460001	chrX_21460001	RAL-21
2571	chrX	22564556	22564584	chrX	22575113	22575137	jockey	5	10554	9.5	9.5	9.5	0.5	10581	chrX	22564556	intergenic	not near genes	chrX	22569846	intergenic	not near genes	chrX	22575137	intergenic	not near genes	chrX_5_22565001	chrX_22565001	RAL-21
2576	chrX	22697483	22697515	chrX	22701800	22701816	Juan	8	4314	2.0	2.5	2.2	2.5	4333	chrX	22697483	intron	CR44997 +	chrX	22699650	intron	CR44997 +	chrX	22701816	intron	CR44997 +	chrX_8_22695001	chrX_22695001	RAL-21
2577	chrX	22771488	22771523	chrX	22774796	22774834	297	11	3308	3.0	1.5	2.2	3.4	3346	chrX	22771488	intron	CR44997 +	chrX	22773161	intron	CR44997 +	chrX	22774834	intron	CR44997 +	chrX_11_22770001	chrX_22770001	RAL-21
2579	chrX	22811988	22812003	chrX	22816780	22816795	F-element	6	4791	3.0	2.0	2.5	1.7	4807	chrX	22811988	intergenic	CG12446 -	chrX	22814392	intergenic	not near genes	chrX	22816795	intergenic	not near genes	chrX_6_22810001	chrX_22810001	RAL-21
2582	chrX	22967370	22967399	chrX	23154541	23154570	diver	5	187171	4.5	17.5	11.0	0.4	187200	chrX	22967370	intergenic	not near genes	chrX	23060970	intergenic	not near genes	chrX	23154570	intergenic	not near genes	chrX_5_23060001	chrX_23060001	RAL-21
2583	chrX	22987083	22987119	chrX	22989762	22989783	Burdock	8	2676	4.0	3.0	3.5	1.8	2700	chrX	22987083	intron,intron	stnA -,stnB -	chrX	22988433	intron,intron	stnA -,stnB -	chrX	22989783	intron,intron	stnA -,stnB -	chrX_8_22985001	chrX_22985001	RAL-21
2585	chrX	22996295	22996338	chrX	23003547	23003590	roo	9	7251	5.5	2.5	4.0	1.8	7295	chrX	22996295	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003590	intron,intron	stnA -,stnB -	chrX_9_22995001	chrX_22995001	RAL-21
2586	chrX	23036366	23036401	chrX	23037787	23037803	pogo	10	1419	2.0	3.5	2.8	2.6	1437	chrX	23036366	intron	CG12061 +	chrX	23037084	intron	CG12061 +	chrX	23037803	intron	CG12061 +	chrX_10_23035001	chrX_23035001	RAL-21
2587	chrX	23053465	23053474	chrX	23062404	23062413	diver	6	8939	4.0	4.0	4.0	1.2	8948	chrX	23053465	intergenic	not near genes	chrX	23057939	intergenic	not near genes	chrX	23062413	intergenic	not near genes	chrX_6_23055001	chrX_23055001	RAL-21