SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47489 chr2L 52564 52593 jockey 6 5105 2.5 4.5 3.5 1.3 5133 chr2L 47460 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-217 2 chr2L 590336 590625 chr2L 590428 590726 6 96 6.0 4.0 5.0 1.0 390 chr2L 590336 intron Gsc - chr2L 590531 intron Gsc - chr2L 590726 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-217 3 chr2L 590634 590650 chr2L 590721 590751 4 98 3.0 1.5 2.2 1.2 117 chr2L 590634 intron Gsc - chr2L 590692 intron Gsc - chr2L 590751 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-217 4 chr2L 686917 686947 chr2L 695957 695986 roo 5 9039 0.5 2.0 1.2 2.3 9069 chr2L 686917 intron ds - chr2L 691452 intron ds - chr2L 695986 intron ds - chr2L_5_690001 chr2L_690001 RAL-217 5 chr2L 764562 764591 chr2L 764643 764672 5 81 2.5 1.5 2.0 1.7 110 chr2L 764562 intergenic not near genes chr2L 764617 intergenic not near genes chr2L 764672 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-217 6 chr2L 770463 770491 chr2L 772244 772244 Bari1 10 1775 1.5 3.0 2.2 3.1 1781 chr2L 770463 intergenic not near genes chr2L 771354 intergenic not near genes chr2L 772244 intergenic CR44614 + chr2L_10_770001 chr2L_770001 RAL-217 7 chr2L 777464 777497 chr2L 777544 777561 6 73 3.5 3.0 3.2 1.4 97 chr2L 777464 intergenic not near genes chr2L 777512 intergenic not near genes chr2L 777561 intergenic not near genes chr2L_6_775001 chr2L_775001 RAL-217 8 chr2L 1036461 1036476 chr2L 1036550 1036557 6 88 2.0 1.5 1.8 2.1 96 chr2L 1036461 intron IA-2 - chr2L 1036509 intron IA-2 - chr2L 1036557 intron IA-2 - chr2L_6_1035001 chr2L_1035001 RAL-217 9 chr2L 1126676 1126688 chr2L 1126752 1126764 7 74 4.5 4.5 4.5 1.3 88 chr2L 1126676 intron Pino - chr2L 1126720 intron Pino - chr2L 1126764 intron Pino - chr2L_7_1125001 chr2L_1125001 RAL-217 10 chr2L 1156860 1156893 chr2L 1156965 1156998 5 105 0.5 0.5 0.5 3.3 138 chr2L 1156860 intron capt - chr2L 1156929 intron capt - chr2L 1156998 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-217 11 chr2L 1220127 1220162 chr2L 1227593 1227628 blood 6 7466 3.0 1.0 2.0 2.0 7501 chr2L 1220127 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-217 12 chr2L 1443346 1443357 chr2L 1443425 1443437 5 79 0.0 3.5 1.8 1.8 91 chr2L 1443346 3` UTR CG43402 + chr2L 1443392 3` UTR CG43402 + chr2L 1443437 3` UTR CG43402 + chr2L_5_1440001 chr2L_1440001 RAL-217 13 chr2L 1450707 1450724 chr2L 1450783 1450809 5 83 1.0 0.5 0.8 2.8 102 chr2L 1450707 intergenic not near genes chr2L 1450758 intergenic not near genes chr2L 1450809 intergenic not near genes chr2L_5_1450001 chr2L_1450001 RAL-217 14 chr2L 1536511 1536516 chr2L 1536642 1536648 5 130 0.0 5.0 2.5 1.4 137 chr2L 1536511 intergenic not near genes chr2L 1536580 intergenic not near genes chr2L 1536648 intergenic not near genes chr2L_5_1535001 chr2L_1535001 RAL-217 15 chr2L 1570687 1570719 chr2L 1573559 1573591 F-element 7 2872 3.0 2.0 2.5 2.0 2904 chr2L 1570687 intron haf + chr2L 1572139 intron haf + chr2L 1573591 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-217 16 chr2L 1711373 1711384 chr2L 1711697 1711707 mdg3 6 322 4.5 4.0 4.2 1.2 334 chr2L 1711373 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711540 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_6_1710001 chr2L_1710001 RAL-217 17 chr2L 2022723 2022752 chr2L 2022799 2022827 5 76 3.0 1.0 2.0 1.7 104 chr2L 2022723 intron CG4238 + chr2L 2022775 intron CG4238 + chr2L 2022827 intron CG4238 + chr2L_5_2020001 chr2L_2020001 RAL-217 18 chr2L 2047522 2047553 chr2L 2047618 2047649 7 96 2.0 2.0 2.0 2.3 127 chr2L 2047522 exon Kebab + chr2L 2047586 3` UTR Kebab + chr2L 2047649 intron Kebab + chr2L_7_2045001 chr2L_2045001 RAL-217 19 chr2L 2100385 2100402 chr2L 2109532 2109553 roo 5 9148 1.0 4.5 2.8 1.3 9168 chr2L 2100385 intron dpr3 - chr2L 2104969 intron dpr3 - chr2L 2109553 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-217 20 chr2L 2112126 2112145 chr2L 2119788 2119807 opus 8 7660 1.0 5.5 3.2 1.9 7681 chr2L 2112126 intergenic not near genes chr2L 2115966 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_8_2115001 chr2L_2115001 RAL-217 21 chr2L 2260803 2260833 chr2L 2260888 2260919 8 86 5.0 2.0 3.5 1.8 116 chr2L 2260803 intergenic not near genes chr2L 2260861 intergenic not near genes chr2L 2260919 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-217 22 chr2L 2282985 2283015 chr2L 2283145 2283170 10 159 3.5 3.5 3.5 2.2 185 chr2L 2282985 intergenic not near genes chr2L 2283078 intergenic not near genes chr2L 2283170 intergenic not near genes chr2L_10_2280001 chr2L_2280001 RAL-217 23 chr2L 2402314 2402341 chr2L 2402425 2402452 7 111 3.0 2.5 2.8 1.8 138 chr2L 2402314 intron VGlut + chr2L 2402383 intron VGlut + chr2L 2402452 intron VGlut + chr2L_7_2400001 chr2L_2400001 RAL-217 24 chr2L 2475673 2475697 chr2L 2475757 2475777 5 84 0.0 1.5 0.8 2.8 104 chr2L 2475673 intergenic not near genes chr2L 2475725 intergenic not near genes chr2L 2475777 intergenic not near genes chr2L_5_2475001 chr2L_2475001 RAL-217 25 chr2L 2542537 2542554 chr2L 2543109 2543125 5 572 1.5 3.5 2.5 1.4 588 chr2L 2542537 intergenic not near genes chr2L 2542831 intergenic not near genes chr2L 2543125 intergenic not near genes chr2L_5_2540001 chr2L_2540001 RAL-217 26 chr2L 2618041 2618067 chr2L 2618120 2618146 6 79 1.0 2.0 1.5 2.4 105 chr2L 2618041 intergenic not near genes chr2L 2618094 intergenic not near genes chr2L 2618146 intergenic not near genes chr2L_6_2615001 chr2L_2615001 RAL-217 27 chr2L 2661203 2661235 chr2L 2663034 2663055 I-element 7 1830 0.5 4.0 2.2 2.2 1852 chr2L 2661203 intergenic not near genes chr2L 2662129 intergenic not near genes chr2L 2663055 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-217 28 chr2L 2667635 2667656 chr2L 2667714 2667735 9 78 2.0 6.0 4.0 1.8 100 chr2L 2667635 intergenic not near genes chr2L 2667685 intergenic not near genes chr2L 2667735 intergenic not near genes chr2L_9_2665001 chr2L_2665001 RAL-217 29 chr2L 2713517 2713551 chr2L 2713616 2713650 10 97 1.0 4.0 2.5 2.9 133 chr2L 2713517 intron CG31690 + chr2L 2713584 intron CG31690 + chr2L 2713650 intron CG31690 + chr2L_10_2710001 chr2L_2710001 RAL-217 30 chr2L 2772610 2772626 chr2L 2779194 2779210 297 4 6584 1.0 2.5 1.8 1.4 6600 chr2L 2772610 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779210 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-217 31 chr2L 2801498 2801531 chr2L 2801582 2801616 13 85 2.0 4.5 3.2 3.1 118 chr2L 2801498 intergenic not near genes chr2L 2801557 intergenic not near genes chr2L 2801616 intergenic not near genes chr2L_13_2800001 chr2L_2800001 RAL-217 32 chr2L 3073030 3073060 chr2L 3078233 3078263 copia 5 5203 1.5 0.0 0.8 2.8 5233 chr2L 3073030 intron toc - chr2L 3075646 intron toc - chr2L 3078263 intron toc - chr2L_5_3075001 chr2L_3075001 RAL-217 33 chr2L 3172080 3172101 chr2L 3172175 3172196 10 94 4.0 9.5 6.8 1.3 116 chr2L 3172080 intergenic not near genes chr2L 3172138 intergenic not near genes chr2L 3172196 intergenic not near genes chr2L_10_3170001 chr2L_3170001 RAL-217 34 chr2L 3291248 3291268 chr2L 3291328 3291333 5 77 0.5 2.5 1.5 2.0 85 chr2L 3291248 3` UTR CG9664 - chr2L 3291290 3` UTR CG9664 - chr2L 3291333 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-217 35 chr2L 3367013 3367043 chr2L 3367161 3367193 6 149 1.5 4.5 3.0 1.5 180 chr2L 3367013 intron CG34394 - chr2L 3367103 intron CG34394 - chr2L 3367193 intron CG34394 - chr2L_6_3365001 chr2L_3365001 RAL-217 36 chr2L 3497838 3497861 chr2L 3497916 3497939 4 78 4.5 1.5 3.0 1.0 101 chr2L 3497838 intron tim - chr2L 3497888 intron tim - chr2L 3497939 intron tim - chr2L_4_3495001 chr2L_3495001 RAL-217 37 chr2L 3680909 3680919 chr2L 3681068 3681078 4 158 0.0 1.5 0.8 2.2 169 chr2L 3680909 intron CG34340 + chr2L 3680994 intron CG34340 + chr2L 3681078 intron CG34340 + chr2L_4_3680001 chr2L_3680001 RAL-217 38 chr2L 3891898 3891916 chr2L 3891983 3892001 4 85 6.5 1.0 3.8 0.8 103 chr2L 3891898 intron capu - chr2L 3891950 intron capu - chr2L 3892001 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-217 39 chr2L 4064934 4064950 chr2L 4065037 4065066 10 112 2.0 3.5 2.8 2.6 132 chr2L 4064934 intron ed + chr2L 4065000 intron ed + chr2L 4065066 intron ed + chr2L_10_4060001 chr2L_4060001 RAL-217 40 chr2L 4125251 4125278 chr2L 4125356 4125383 8 105 1.5 1.0 1.2 3.6 132 chr2L 4125251 intergenic not near genes chr2L 4125317 intergenic not near genes chr2L 4125383 intergenic not near genes chr2L_8_4125001 chr2L_4125001 RAL-217 41 chr2L 4166380 4166405 chr2L 4166462 4166488 6 83 1.0 2.0 1.5 2.4 108 chr2L 4166380 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166488 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-217 42 chr2L 4351473 4351499 chr2L 4351548 4351560 12 74 2.5 3.0 2.8 3.2 87 chr2L 4351473 intergenic CR44700 + chr2L 4351516 intergenic CR44700 + chr2L 4351560 intergenic CR44700 + chr2L_12_4350001 chr2L_4350001 RAL-217 43 chr2L 4388433 4388464 chr2L 4388577 4388608 7 144 2.5 1.5 2.0 2.3 175 chr2L 4388433 5` UTR Tps1 + chr2L 4388520 5` UTR Tps1 + chr2L 4388608 5` UTR Tps1 + chr2L_7_4385001 chr2L_4385001 RAL-217 44 chr2L 4601705 4601737 chr2L 4609145 4609178 mdg1 6 7441 1.5 2.5 2.0 2.0 7473 chr2L 4601705 intron dp - chr2L 4605442 intron dp - chr2L 4609178 intron dp - chr2L_6_4605001 chr2L_4605001 RAL-217 45 chr2L 4708737 4708748 chr2L 4708813 4708824 8 75 3.5 2.5 3.0 2.0 87 chr2L 4708737 intron CG34351 + chr2L 4708780 intron CG34351 + chr2L 4708824 intron CG34351 + chr2L_8_4705001 chr2L_4705001 RAL-217 46 chr2L 4748693 4748724 chr2L 4748771 4748803 6 79 0.5 1.0 0.8 3.3 110 chr2L 4748693 intron CG15630 - chr2L 4748748 intron CG15630 - chr2L 4748803 intron CG15630 - chr2L_6_4745001 chr2L_4745001 RAL-217 47 chr2L 4819496 4819518 chr2L 4819619 4819639 6 123 1.0 3.0 2.0 2.0 143 chr2L 4819496 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819639 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-217 48 chr2L 4869483 4869499 chr2L 4869563 4869579 4 78 1.0 5.5 3.2 1.0 96 chr2L 4869483 intron pog + chr2L 4869531 intron pog + chr2L 4869579 intron pog + chr2L_4_4865001 chr2L_4865001 RAL-217 49 chr2L 4879142 4879180 chr2L 4880376 4880392 19 1225 23.5 13.5 18.5 1.0 1250 chr2L 4879142 exon Cf2 - chr2L 4879767 intron Cf2 - chr2L 4880392 exon Cf2 - chr2L_19_4875001 chr2L_4875001 RAL-217 50 chr2L 4880426 4880446 chr2L 4881221 4881235 4 794 14.0 16.5 15.2 0.2 809 chr2L 4880426 exon Cf2 - chr2L 4880830 intron Cf2 - chr2L 4881235 exon Cf2 - chr2L_4_4880001 chr2L_4880001 RAL-217 51 chr2L 4880447 4880451 chr2L 4881218 4881246 4 782 11.5 15.5 13.5 0.3 799 chr2L 4880447 exon Cf2 - chr2L 4880846 intron Cf2 - chr2L 4881246 exon Cf2 - chr2L_4_4880001 chr2L_4880001 RAL-217 52 chr2L 4953513 4953540 chr2L 4953754 4953781 pogo 7 241 2.5 0.0 1.2 3.2 268 chr2L 4953513 intergenic Jon25Bii - chr2L 4953647 intergenic not near genes chr2L 4953781 intergenic Jon25Bi - chr2L_7_4950001 chr2L_4950001 RAL-217 53 chr2L 5269486 5269518 chr2L 5269864 5269896 7 378 0.5 2.5 1.5 2.8 410 chr2L 5269486 intron,exon tkv -,Cyp4ac3 + chr2L 5269691 intron,exon tkv -,Cyp4ac3 + chr2L 5269896 intron,exon tkv -,Cyp4ac3 + chr2L_7_5265001 chr2L_5265001 RAL-217 54 chr2L 5272455 5272487 chr2L 5272574 5272607 10 114 1.5 3.5 2.5 2.9 152 chr2L 5272455 3` UTR Bsg25D - chr2L 5272531 3` UTR Bsg25D - chr2L 5272607 3` UTR Bsg25D - chr2L_10_5270001 chr2L_5270001 RAL-217 55 chr2L 5633851 5633863 chr2L 5634021 5634034 4 170 4.5 3.0 3.8 0.8 183 chr2L 5633851 intron CG31646 - chr2L 5633942 intron CG31646 - chr2L 5634034 intron CG31646 - chr2L_4_5630001 chr2L_5630001 RAL-217 56 chr2L 5633866 5633883 chr2L 5634020 5634054 8 168 2.5 2.5 2.5 2.3 188 chr2L 5633866 intron CG31646 - chr2L 5633960 intron CG31646 - chr2L 5634054 intron CG31646 - chr2L_8_5630001 chr2L_5630001 RAL-217 57 chr2L 5827726 5827740 chr2L 5836713 5836748 roo 5 9003 4.5 1.0 2.8 1.3 9022 chr2L 5827726 intron TrissinR + chr2L 5832237 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-217 58 chr2L 5897593 5897628 chr2L 5897676 5897711 14 81 2.5 5.0 3.8 2.9 118 chr2L 5897593 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897711 intergenic not near genes chr2L_14_5895001 chr2L_5895001 RAL-217 59 chr2L 5942028 5942052 chr2L 5942120 5942144 9 91 1.0 5.0 3.0 2.2 116 chr2L 5942028 5` UTR CR45289 + chr2L 5942086 5` UTR CR45289 + chr2L 5942144 5` UTR CR45289 + chr2L_9_5940001 chr2L_5940001 RAL-217 60 chr2L 5993331 5993362 chr2L 5993422 5993453 9 90 0.5 4.5 2.5 2.6 122 chr2L 5993331 exon lid - chr2L 5993392 intron lid - chr2L 5993453 intron lid - chr2L_9_5990001 chr2L_5990001 RAL-217 61 chr2L 6093694 6093716 chr2L 6093774 6093796 5 77 3.0 1.5 2.2 1.6 102 chr2L 6093694 exon,3` UTR Kr-h1 +,CG45075 + chr2L 6093745 intron,intron Kr-h1 +,CG45075 + chr2L 6093796 exon,3` UTR Kr-h1 +,CG45075 + chr2L_5_6090001 chr2L_6090001 RAL-217 62 chr2L 6120551 6120574 chr2L 6120641 6120664 4 90 1.0 1.0 1.0 2.0 113 chr2L 6120551 intron stai + chr2L 6120608 intron stai + chr2L 6120664 intron stai + chr2L_4_6120001 chr2L_6120001 RAL-217 63 chr2L 6151642 6151665 chr2L 6151720 6151743 5 78 0.0 3.0 1.5 2.0 101 chr2L 6151642 intergenic Muc26B + chr2L 6151692 intergenic Muc26B + chr2L 6151743 intergenic Muc26B + chr2L_5_6150001 chr2L_6150001 RAL-217 64 chr2L 6185456 6185472 chr2L 6185519 6185550 5 73 3.5 3.0 3.2 1.2 94 chr2L 6185456 intron CG34380 + chr2L 6185503 intron CG34380 + chr2L 6185550 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-217 65 chr2L 6286360 6286393 chr2L 6286456 6286479 8 94 2.0 1.0 1.5 3.2 119 chr2L 6286360 intron Ddr + chr2L 6286420 intron Ddr + chr2L 6286479 intron Ddr + chr2L_8_6285001 chr2L_6285001 RAL-217 66 chr2L 6290226 6290253 chr2L 6290315 6290342 10 84 0.5 2.0 1.2 4.5 116 chr2L 6290226 intron Ddr + chr2L 6290284 intron Ddr + chr2L 6290342 intron Ddr + chr2L_10_6290001 chr2L_6290001 RAL-217 67 chr2L 6308322 6308341 chr2L 6308402 6308424 4 82 2.5 0.5 1.5 1.6 102 chr2L 6308322 intron Ddr + chr2L 6308373 intron Ddr + chr2L 6308424 intron,3` UTR Ddr +,CG43922 - chr2L_4_6305001 chr2L_6305001 RAL-217 68 chr2L 6426858 6426881 chr2L 6445118 6445141 roo 8 18260 2.5 3.5 3.0 2.0 18283 chr2L 6426858 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445141 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-217 69 chr2L 6463570 6463584 chr2L 6463645 6463676 7 84 10.0 3.5 6.8 0.9 106 chr2L 6463570 exon CG16947 - chr2L 6463623 exon CG16947 - chr2L 6463676 exon CG16947 - chr2L_7_6460001 chr2L_6460001 RAL-217 70 chr2L 6876780 6876788 chr2L 6882964 6882979 diver 4 6189 7.5 0.5 4.0 0.8 6199 chr2L 6876780 intron Nlg2 + chr2L 6879880 intron Nlg2 + chr2L 6882979 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-217 71 chr2L 6876789 6876807 chr2L 6882963 6882997 diver 5 6186 5.0 0.5 2.8 1.3 6208 chr2L 6876789 intron Nlg2 + chr2L 6879893 intron Nlg2 + chr2L 6882997 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-217 72 chr2L 7050324 7050346 chr2L 7050399 7050422 5 76 1.0 0.5 0.8 2.8 98 chr2L 7050324 intron milt + chr2L 7050373 intron milt + chr2L 7050422 intron milt + chr2L_5_7050001 chr2L_7050001 RAL-217 73 chr2L 7331665 7331695 chr2L 7331752 7331778 4 86 1.0 0.5 0.8 2.2 113 chr2L 7331665 intergenic not near genes chr2L 7331722 intergenic not near genes chr2L 7331778 intergenic not near genes chr2L_4_7330001 chr2L_7330001 RAL-217 74 chr2L 7829267 7829302 chr2L 7829365 7829400 7 98 1.5 1.5 1.5 2.8 133 chr2L 7829267 intron mts + chr2L 7829334 intron mts + chr2L 7829400 intron mts + chr2L_7_7825001 chr2L_7825001 RAL-217 75 chr2L 7867573 7867603 chr2L 7867664 7867697 5 93 1.5 2.0 1.8 1.8 124 chr2L 7867573 intron Proc - chr2L 7867635 intron Proc - chr2L 7867697 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-217 76 chr2L 7922752 7922772 chr2L 7922826 7922852 7 80 2.0 0.0 1.0 3.5 100 chr2L 7922752 intron Snoo - chr2L 7922802 intron Snoo - chr2L 7922852 intron Snoo - chr2L_7_7920001 chr2L_7920001 RAL-217 77 chr2L 7959043 7959062 chr2L 7960454 7960473 pogo 6 1411 1.5 0.0 0.8 3.3 1430 chr2L 7959043 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960473 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-217 78 chr2L 7977090 7977101 chr2L 7984066 7984076 297 4 6976 1.0 3.0 2.0 1.3 6986 chr2L 7977090 intron Snoo - chr2L 7980583 intron Snoo - chr2L 7984076 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-217 79 chr2L 8034426 8034459 chr2L 8034520 8034553 9 93 4.5 4.0 4.2 1.7 127 chr2L 8034426 intron,intron CG7367 -,Cka + chr2L 8034490 intron,intron CG7367 -,Cka + chr2L 8034553 intron,intron CG7367 -,Cka + chr2L_9_8030001 chr2L_8030001 RAL-217 80 chr2L 8244738 8244749 chr2L 8244857 8244871 6 121 2.0 5.5 3.8 1.2 133 chr2L 8244738 intron CG8086 - chr2L 8244804 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-217 81 chr2L 8286300 8286328 chr2L 8286387 8286414 10 87 0.0 4.5 2.2 3.1 114 chr2L 8286300 intron Btk29A - chr2L 8286357 intron Btk29A - chr2L 8286414 intron Btk29A - chr2L_10_8285001 chr2L_8285001 RAL-217 82 chr2L 8300298 8300331 chr2L 8300395 8300428 9 97 15.0 16.0 15.5 0.5 130 chr2L 8300298 intron Btk29A - chr2L 8300363 intron Btk29A - chr2L 8300428 intron Btk29A - chr2L_9_8300001 chr2L_8300001 RAL-217 83 chr2L 8815744 8815776 chr2L 8815825 8815857 11 80 2.5 1.0 1.8 3.9 113 chr2L 8815744 intergenic not near genes chr2L 8815800 intergenic not near genes chr2L 8815857 intergenic not near genes chr2L_11_8815001 chr2L_8815001 RAL-217 84 chr2L 8993222 8993242 chr2L 8993324 8993343 5 102 24.5 19.5 22.0 0.2 121 chr2L 8993222 exon CG9555 + chr2L 8993282 exon CG9555 + chr2L 8993343 3` UTR CG9555 + chr2L_5_8990001 chr2L_8990001 RAL-217 85 chr2L 9000280 9000312 chr2L 9007790 9007817 roo 6 7509 2.0 2.0 2.0 2.0 7537 chr2L 9000280 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-217 86 chr2L 9040886 9040913 chr2L 9040962 9040988 7 75 1.5 1.0 1.2 3.2 102 chr2L 9040886 intergenic not near genes chr2L 9040937 intergenic not near genes chr2L 9040988 intergenic not near genes chr2L_7_9040001 chr2L_9040001 RAL-217 87 chr2L 9072618 9072633 chr2L 9072871 9072887 5 254 2.0 3.0 2.5 1.4 269 chr2L 9072618 intergenic not near genes chr2L 9072752 intergenic not near genes chr2L 9072887 intergenic not near genes chr2L_5_9070001 chr2L_9070001 RAL-217 88 chr2L 9084337 9084340 chr2L 16217660 16217660 17 7133321 15.0 13.5 14.2 1.1 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-217 89 chr2L 9251146 9251177 chr2L 9251243 9251273 11 94 0.0 2.5 1.2 5.0 127 chr2L 9251146 intergenic aust -,borr - chr2L 9251210 intergenic aust -,borr - chr2L 9251273 intergenic borr -,aust - chr2L_11_9250001 chr2L_9250001 RAL-217 90 chr2L 9259228 9259246 chr2L 9259307 9259338 6 90 0.5 2.0 1.2 2.7 110 chr2L 9259228 intron Ggamma30A + chr2L 9259283 intron Ggamma30A + chr2L 9259338 intron Ggamma30A + chr2L_6_9255001 chr2L_9255001 RAL-217 91 chr2L 9297379 9297398 chr2L 9297456 9297475 9 77 3.0 3.0 3.0 2.2 96 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297427 3` UTR Ggamma30A + chr2L 9297475 3` UTR Ggamma30A + chr2L_9_9295001 chr2L_9295001 RAL-217 92 chr2L 9308422 9308438 chr2L 9308498 9308515 4 77 4.0 5.0 4.5 0.7 93 chr2L 9308422 intergenic not near genes chr2L 9308468 intergenic not near genes chr2L 9308515 intergenic not near genes chr2L_4_9305001 chr2L_9305001 RAL-217 93 chr2L 9308440 9308449 chr2L 9308495 9308527 6 73 3.0 4.5 3.8 1.2 87 chr2L 9308440 intergenic not near genes chr2L 9308484 intergenic not near genes chr2L 9308527 intergenic not near genes chr2L_6_9305001 chr2L_9305001 RAL-217 94 chr2L 9317426 9317559 chr2L 9317544 9317835 6 222 0.0 0.0 0.0 6.0 409 chr2L 9317426 intergenic not near genes chr2L 9317630 intergenic not near genes chr2L 9317835 intergenic not near genes chr2L_6_9315001 chr2L_9315001 RAL-217 95 chr2L 9354085 9354101 chr2L 9354490 9354506 6 405 0.5 2.0 1.2 2.7 421 chr2L 9354085 intergenic not near genes chr2L 9354296 intergenic not near genes chr2L 9354506 intergenic not near genes chr2L_6_9350001 chr2L_9350001 RAL-217 96 chr2L 9457069 9457101 chr2L 9457146 9457178 8 77 1.5 6.5 4.0 1.6 109 chr2L 9457069 intron numb + chr2L 9457124 intron numb + chr2L 9457178 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-217 97 chr2L 9597602 9597636 chr2L 9597682 9597715 7 79 2.0 3.5 2.8 1.8 113 chr2L 9597602 intergenic not near genes chr2L 9597658 intergenic not near genes chr2L 9597715 intergenic not near genes chr2L_7_9595001 chr2L_9595001 RAL-217 98 chr2L 9624456 9624476 chr2L 9624536 9624556 5 80 2.5 2.5 2.5 1.4 100 chr2L 9624456 3` UTR CG31882 - chr2L 9624506 3` UTR CG31882 - chr2L 9624556 3` UTR CG31882 - chr2L_5_9620001 chr2L_9620001 RAL-217 99 chr2L 9756555 9756582 chr2L 9757208 9757235 8 654 22.0 15.5 18.8 0.4 680 chr2L 9756555 intergenic not near genes chr2L 9756895 intergenic not near genes chr2L 9757235 intergenic not near genes chr2L_8_9755001 chr2L_9755001 RAL-217 100 chr2L 9973727 9973757 chr2L 9980846 9980876 HMS-Beagle 11 7119 2.5 4.0 3.2 2.6 7149 chr2L 9973727 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_11_9975001 chr2L_9975001 RAL-217 101 chr2L 9986350 9986379 chr2L 9986444 9986474 12 94 4.0 3.5 3.8 2.5 124 chr2L 9986350 intron bib + chr2L 9986412 intron bib + chr2L 9986474 intron bib + chr2L_12_9985001 chr2L_9985001 RAL-217 102 chr2L 10050385 10050416 chr2L 10050470 10050500 16 82 2.5 3.0 2.8 4.2 115 chr2L 10050385 exon CG33301 + chr2L 10050442 exon CG33301 + chr2L 10050500 exon CG33301 + chr2L_16_10050001 chr2L_10050001 RAL-217 103 chr2L 10051726 10051746 chr2L 10051808 10051831 12 84 4.5 3.5 4.0 2.4 105 chr2L 10051726 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051831 5` UTR CR44874 + chr2L_12_10050001 chr2L_10050001 RAL-217 104 chr2L 10085872 10085900 chr2L 10086000 10086028 5 128 22.0 16.0 19.0 0.2 156 chr2L 10085872 intron CG44153 - chr2L 10085950 intron CG44153 - chr2L 10086028 intron CG44153 - chr2L_5_10085001 chr2L_10085001 RAL-217 105 chr2L 10108981 10109000 chr2L 10109063 10109083 7 82 7.0 2.0 4.5 1.3 102 chr2L 10108981 intron,intron CG44153 -,CG34109 + chr2L 10109032 intron,intron CG44153 -,CG34109 + chr2L 10109083 intron,intron CG44153 -,CG34109 + chr2L_7_10105001 chr2L_10105001 RAL-217 106 chr2L 10153203 10153227 chr2L 10153282 10153298 5 76 3.0 0.5 1.8 1.8 95 chr2L 10153203 intron,exon CG44153 -,CG4839 + chr2L 10153250 intron,intron CG44153 -,CG4839 + chr2L 10153298 intron,intron CG44153 -,CG4839 + chr2L_5_10150001 chr2L_10150001 RAL-217 107 chr2L 10156328 10156351 chr2L 10163798 10163819 blood 4 7470 2.5 6.5 4.5 0.7 7491 chr2L 10156328 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163819 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-217 108 chr2L 10490279 10490288 chr2L 10490357 10490370 4 81 2.0 3.5 2.8 1.1 91 chr2L 10490279 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490324 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490370 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_4_10490001 chr2L_10490001 RAL-217 109 chr2L 10862840 10862854 chr2L 10864454 10864468 Rt1c 4 1613 7.0 4.5 5.8 0.6 1628 chr2L 10862840 3` UTR CR43807 - chr2L 10863654 intron CR43807 - chr2L 10864468 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-217 110 chr2L 10862855 10862874 chr2L 10864451 10864488 Rt1c 15 1613 4.0 3.5 3.8 3.1 1633 chr2L 10862855 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864488 3` UTR CR43807 - chr2L_15_10860001 chr2L_10860001 RAL-217 111 chr2L 10946949 10946976 chr2L 10956164 10956191 roo 12 9214 4.5 5.0 4.8 2.1 9242 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_12_10950001 chr2L_10950001 RAL-217 112 chr2L 10959259 10959281 chr2L 10959737 10959756 6 477 0.0 1.0 0.5 4.0 497 chr2L 10959259 intron dpr2 - chr2L 10959508 intron dpr2 - chr2L 10959756 intron dpr2 - chr2L_6_10955001 chr2L_10955001 RAL-217 113 chr2L 11378579 11378609 chr2L 11378674 11378700 4 90 3.0 3.0 3.0 1.0 121 chr2L 11378579 intergenic not near genes chr2L 11378640 intergenic not near genes chr2L 11378700 intergenic not near genes chr2L_4_11375001 chr2L_11375001 RAL-217 114 chr2L 11380610 11380880 chr2L 11380687 11380983 11 96 0.0 2.0 1.0 5.5 373 chr2L 11380610 intergenic not near genes chr2L 11380796 intergenic not near genes chr2L 11380983 intergenic not near genes chr2L_11_11380001 chr2L_11380001 RAL-217 115 chr2L 11458949 11458958 chr2L 11459065 11459074 4 116 1.5 1.5 1.5 1.6 125 chr2L 11458949 intergenic not near genes chr2L 11459012 intergenic not near genes chr2L 11459074 intergenic not near genes chr2L_4_11455001 chr2L_11455001 RAL-217 116 chr2L 11537186 11537187 chr2L 11537268 11537269 4 82 4.0 6.0 5.0 0.7 83 chr2L 11537186 intergenic CG43438 + chr2L 11537228 intergenic CG43438 + chr2L 11537269 intergenic CG43438 + chr2L_4_11535001 chr2L_11535001 RAL-217 117 chr2L 11540585 11540614 chr2L 11547987 11548016 Tabor 5 7402 0.0 1.5 0.8 2.8 7431 chr2L 11540585 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-217 118 chr2L 11614050 11614081 chr2L 11615545 11615575 hopper2 5 1494 2.0 2.5 2.2 1.6 1525 chr2L 11614050 intron kek2 + chr2L 11614812 intron kek2 + chr2L 11615575 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-217 119 chr2L 11713508 11713540 chr2L 11720976 11721008 blood 10 7468 2.0 3.5 2.8 2.6 7500 chr2L 11713508 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-217 120 chr2L 11865517 11865542 chr2L 11865629 11865651 7 111 5.0 3.0 4.0 1.4 134 chr2L 11865517 intron Pde1c - chr2L 11865584 intron Pde1c - chr2L 11865651 intron Pde1c - chr2L_7_11865001 chr2L_11865001 RAL-217 121 chr2L 11910961 11910986 chr2L 11911039 11911063 5 78 2.5 0.5 1.5 2.0 102 chr2L 11910961 intron Pde1c - chr2L 11911012 intron Pde1c - chr2L 11911063 intron Pde1c - chr2L_5_11910001 chr2L_11910001 RAL-217 122 chr2L 12157607 12157632 chr2L 12157686 12157710 14 78 3.0 3.0 3.0 3.5 103 chr2L 12157607 intron CG31760 + chr2L 12157658 intron CG31760 + chr2L 12157710 intron CG31760 + chr2L_14_12155001 chr2L_12155001 RAL-217 123 chr2L 12158516 12158541 chr2L 12158708 12158733 4 192 1.0 1.5 1.2 1.8 217 chr2L 12158516 intron CG31760 + chr2L 12158624 intron CG31760 + chr2L 12158733 intron CG31760 + chr2L_4_12155001 chr2L_12155001 RAL-217 124 chr2L 12246032 12246062 chr2L 12246110 12246140 5 78 1.5 4.0 2.8 1.3 108 chr2L 12246032 intron aret + chr2L 12246086 intron aret + chr2L 12246140 intron aret + chr2L_5_12245001 chr2L_12245001 RAL-217 125 chr2L 12263945 12263966 chr2L 12264027 12264048 11 80 2.0 3.5 2.8 2.9 103 chr2L 12263945 intron aret + chr2L 12263996 intron aret + chr2L 12264048 intron aret + chr2L_11_12260001 chr2L_12260001 RAL-217 126 chr2L 12426131 12426164 chr2L 12426214 12426247 9 80 3.5 4.0 3.8 1.9 116 chr2L 12426131 exon CG6405 + chr2L 12426189 exon CG6405 + chr2L 12426247 exon CG6405 + chr2L_9_12425001 chr2L_12425001 RAL-217 127 chr2L 12487886 12487914 chr2L 12487967 12487995 6 80 1.0 0.5 0.8 3.3 109 chr2L 12487886 intron bun - chr2L 12487940 intron bun - chr2L 12487995 intron bun - chr2L_6_12485001 chr2L_12485001 RAL-217 128 chr2L 12558320 12558347 chr2L 12565449 12565475 HMS-Beagle 5 7129 1.5 1.0 1.2 2.3 7155 chr2L 12558320 intergenic not near genes chr2L 12561898 intergenic not near genes chr2L 12565475 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-217 129 chr2L 12736672 12736706 chr2L 12736748 12736782 11 76 1.5 3.0 2.2 3.4 110 chr2L 12736672 intron MRP + chr2L 12736727 intron MRP + chr2L 12736782 intron MRP + chr2L_11_12735001 chr2L_12735001 RAL-217 130 chr2L 12739177 12739203 chr2L 12743958 12743984 Doc 12 4780 2.5 2.5 2.5 3.4 4807 chr2L 12739177 exon MRP + chr2L 12741580 intron MRP + chr2L 12743984 exon MRP + chr2L_12_12740001 chr2L_12740001 RAL-217 131 chr2L 12751308 12751341 chr2L 12751391 12751424 9 80 1.0 1.5 1.2 4.1 116 chr2L 12751308 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_9_12750001 chr2L_12750001 RAL-217 132 chr2L 12759213 12759234 chr2L 12759308 12759329 6 94 0.0 5.0 2.5 1.7 116 chr2L 12759213 intergenic not near genes chr2L 12759271 intergenic not near genes chr2L 12759329 intergenic not near genes chr2L_6_12755001 chr2L_12755001 RAL-217 133 chr2L 12861700 12861730 chr2L 12863166 12863197 hobo 9 1463 2.5 5.0 3.8 1.9 1497 chr2L 12861700 intergenic not near genes chr2L 12862448 intergenic not near genes chr2L 12863197 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-217 134 chr2L 12894026 12894051 chr2L 12895486 12895517 hobo 4 1460 0.5 3.0 1.8 1.4 1491 chr2L 12894026 intergenic not near genes chr2L 12894772 intergenic not near genes chr2L 12895517 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-217 135 chr2L 12933852 12933875 chr2L 12941319 12941341 blood 8 7466 2.0 4.0 3.0 2.0 7489 chr2L 12933852 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941341 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-217 136 chr2L 13155183 13155189 chr2L 13155503 13155509 4 320 0.0 2.0 1.0 2.0 326 chr2L 13155183 intergenic not near genes chr2L 13155346 intergenic not near genes chr2L 13155509 intergenic not near genes chr2L_4_13155001 chr2L_13155001 RAL-217 137 chr2L 13204316 13204332 chr2L 13204414 13204431 7 98 6.5 3.5 5.0 1.2 115 chr2L 13204316 intron Pect + chr2L 13204374 intron Pect + chr2L 13204431 intron Pect + chr2L_7_13200001 chr2L_13200001 RAL-217 138 chr2L 13405649 13405677 chr2L 13410444 13410474 Doc 6 4792 4.0 1.5 2.8 1.6 4825 chr2L 13405649 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_6_13405001 chr2L_13405001 RAL-217 139 chr2L 13418395 13418426 chr2L 13418686 13418718 8 292 0.0 3.0 1.5 3.2 323 chr2L 13418395 intron,intron CG42784 +,CG43850 + chr2L 13418556 intron,intron CG42784 +,CG43850 + chr2L 13418718 intron,intron CG42784 +,CG43850 + chr2L_8_13415001 chr2L_13415001 RAL-217 140 chr2L 13531568 13531592 chr2L 13531654 13531678 4 86 1.0 0.0 0.5 2.7 110 chr2L 13531568 intron,exon B4 -,CG33643 + chr2L 13531623 intron,exon B4 -,CG33643 + chr2L 13531678 intron B4 - chr2L_4_13530001 chr2L_13530001 RAL-217 141 chr2L 13693010 13693031 chr2L 13693086 13693107 6 76 1.0 3.0 2.0 2.0 97 chr2L 13693010 intron CG31814 - chr2L 13693058 intron CG31814 - chr2L 13693107 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-217 142 chr2L 13699561 13699586 chr2L 13699638 13699663 8 77 4.5 6.5 5.5 1.2 102 chr2L 13699561 intron CG31814 - chr2L 13699612 intron CG31814 - chr2L 13699663 intron CG31814 - chr2L_8_13695001 chr2L_13695001 RAL-217 143 chr2L 13951754 13951782 chr2L 13952582 13952614 13 830 1.0 3.0 2.0 4.3 860 chr2L 13951754 intron Ance-3 + chr2L 13952184 intron Ance-3 + chr2L 13952614 intron Ance-3 + chr2L_13_13950001 chr2L_13950001 RAL-217 144 chr2L 14246286 14246315 chr2L 14246364 14246379 6 75 0.0 0.0 0.0 6.0 93 chr2L 14246286 intergenic not near genes chr2L 14246332 intergenic not near genes chr2L 14246379 intergenic not near genes chr2L_6_14245001 chr2L_14245001 RAL-217 145 chr2L 14549164 14549169 chr2L 14549240 14549245 4 76 1.5 2.0 1.8 1.4 81 chr2L 14549164 intergenic CG4218 - chr2L 14549204 intergenic CG4218 - chr2L 14549245 intergenic CG4218 - chr2L_4_14545001 chr2L_14545001 RAL-217 146 chr2L 14564196 14564225 chr2L 14564271 14564284 8 68 5.0 4.0 4.5 1.5 88 chr2L 14564196 intergenic CG3473 - chr2L 14564240 intergenic not near genes chr2L 14564284 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-217 147 chr2L 14576702 14576728 chr2L 14576795 14576817 4 92 2.5 6.5 4.5 0.7 115 chr2L 14576702 5` UTR CR44856 + chr2L 14576760 5` UTR CR44856 + chr2L 14576817 5` UTR CR44856 + chr2L_4_14575001 chr2L_14575001 RAL-217 148 chr2L 14642574 14642602 chr2L 14651737 14651765 roo 5 9163 0.0 2.0 1.0 2.5 9191 chr2L 14642574 intron osp - chr2L 14647170 intron osp - chr2L 14651765 intron osp - chr2L_5_14645001 chr2L_14645001 RAL-217 149 chr2L 14657021 14657050 chr2L 14657099 14657129 8 79 3.0 1.0 2.0 2.7 108 chr2L 14657021 intron osp - chr2L 14657075 intron osp - chr2L 14657129 intron osp - chr2L_8_14655001 chr2L_14655001 RAL-217 150 chr2L 14747536 14747565 chr2L 14747618 14747652 9 86 1.0 2.5 1.8 3.2 116 chr2L 14747536 intergenic not near genes chr2L 14747594 intergenic not near genes chr2L 14747652 intergenic not near genes chr2L_9_14745001 chr2L_14745001 RAL-217 151 chr2L 14803885 14803903 chr2L 14809088 14809106 copia 5 5201 0.0 2.5 1.2 2.3 5221 chr2L 14803885 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809106 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-217 152 chr2L 14840981 14841004 chr2L 14841068 14841091 5 87 0.0 0.5 0.2 4.2 110 chr2L 14840981 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841091 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-217 153 chr2L 14889957 14889986 chr2L 14890382 14890411 jockey 9 425 1.5 3.0 2.2 2.8 454 chr2L 14889957 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890411 intergenic not near genes chr2L_9_14890001 chr2L_14890001 RAL-217 154 chr2L 14992057 14992067 chr2L 14992148 14992158 5 91 4.0 0.0 2.0 1.7 101 chr2L 14992057 intron mol - chr2L 14992108 intron mol - chr2L 14992158 intron mol - chr2L_5_14990001 chr2L_14990001 RAL-217 155 chr2L 15196737 15196770 chr2L 15196821 15196853 11 82 3.5 4.5 4.0 2.2 116 chr2L 15196737 intron CG4168 - chr2L 15196795 intron CG4168 - chr2L 15196853 intron CG4168 - chr2L_11_15195001 chr2L_15195001 RAL-217 156 chr2L 15204836 15204866 chr2L 15204978 15205007 5 141 1.5 2.5 2.0 1.7 171 chr2L 15204836 intergenic not near genes chr2L 15204922 intergenic not near genes chr2L 15205007 intergenic not near genes chr2L_5_15200001 chr2L_15200001 RAL-217 157 chr2L 15305492 15305514 chr2L 15305584 15305605 6 92 2.5 4.0 3.2 1.4 113 chr2L 15305492 intergenic not near genes chr2L 15305548 intergenic not near genes chr2L 15305605 intergenic not near genes chr2L_6_15305001 chr2L_15305001 RAL-217 158 chr2L 15317951 15317973 chr2L 15318037 15318059 6 86 0.5 0.5 0.5 4.0 108 chr2L 15317951 intergenic nht - chr2L 15318005 3` UTR nht - chr2L 15318059 3` UTR nht - chr2L_6_15315001 chr2L_15315001 RAL-217 159 chr2L 15427278 15427314 chr2L 15427464 15427500 4 186 2.5 0.0 1.2 1.8 222 chr2L 15427278 intergenic not near genes chr2L 15427389 intergenic not near genes chr2L 15427500 intergenic not near genes chr2L_4_15425001 chr2L_15425001 RAL-217 160 chr2L 15514325 15514332 chr2L 15514409 15514416 4 84 2.0 4.0 3.0 1.0 91 chr2L 15514325 intergenic not near genes chr2L 15514370 intergenic not near genes chr2L 15514416 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-217 161 chr2L 15586428 15586437 chr2L 15593480 15593489 297 4 7052 0.5 3.0 1.8 1.4 7061 chr2L 15586428 intergenic not near genes chr2L 15589958 intergenic not near genes chr2L 15593489 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-217 162 chr2L 15626864 15626896 chr2L 15629507 15629539 8 2643 14.5 15.5 15.0 0.5 2675 chr2L 15626864 intergenic not near genes chr2L 15628202 intergenic CG7631 + chr2L 15629539 3` UTR CG7631 + chr2L_8_15625001 chr2L_15625001 RAL-217 163 chr2L 15768671 15768672 chr2L 15769139 15769150 7 469 8.5 20.5 14.5 0.5 479 chr2L 15768671 3` UTR Ku80 - chr2L 15768910 exon Ku80 - chr2L 15769150 exon Ku80 - chr2L_7_15765001 chr2L_15765001 RAL-217 164 chr2L 15918662 15918694 chr2L 15918739 15918760 8 75 1.0 3.5 2.2 2.5 98 chr2L 15918662 intron beat-Ib - chr2L 15918711 intron beat-Ib - chr2L 15918760 intron beat-Ib - chr2L_8_15915001 chr2L_15915001 RAL-217 165 chr2L 15945478 15945510 chr2L 15945619 15945651 5 138 1.0 2.0 1.5 2.0 173 chr2L 15945478 intron beat-Ib - chr2L 15945564 intron beat-Ib - chr2L 15945651 intron beat-Ib - chr2L_5_15945001 chr2L_15945001 RAL-217 166 chr2L 15956030 15956052 chr2L 15957497 15957519 hobo 6 1467 3.0 3.5 3.2 1.4 1489 chr2L 15956030 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957519 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-217 167 chr2L 1533437 1533439 chr2L 16071771 16071771 4 14538332 6.5 14.5 10.5 0.3 14538334 chr2L 1533437 intergenic not near genes chr2L 8802604 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_8800001 chr2L_8800001 RAL-217 168 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 12 145889 17.0 13.5 15.2 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-217 169 chr2L 16098926 16098949 chr2L 16099014 16099037 6 88 2.0 1.5 1.8 2.1 111 chr2L 16098926 intergenic not near genes chr2L 16098982 intergenic not near genes chr2L 16099037 intergenic not near genes chr2L_6_16095001 chr2L_16095001 RAL-217 170 chr2L 9084336 9084340 chr2L 16217660 16217660 18 7133321 15.0 13.5 14.2 1.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_18_12650001 chr2L_12650001 RAL-217 171 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 17.0 13.5 15.2 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-217 172 chr2L 16280265 16280290 chr2L 16281430 16281449 1360 5 1163 3.0 7.5 5.2 0.8 1184 chr2L 16280265 intron crp - chr2L 16280857 intron crp - chr2L 16281449 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-217 173 chr2L 16447636 16447648 chr2L 16447985 16448002 7 353 0.5 0.5 0.5 4.7 366 chr2L 16447636 intron,intron CG5888 -,Idgf2 + chr2L 16447819 intron,intron CG5888 -,Idgf2 + chr2L 16448002 intron,intron CG5888 -,Idgf2 + chr2L_7_16445001 chr2L_16445001 RAL-217 174 chr2L 16504997 16505016 chr2L 16505107 16505126 5 110 0.0 3.5 1.8 1.8 129 chr2L 16504997 intron Tpr2 + chr2L 16505062 intron Tpr2 + chr2L 16505126 intron Tpr2 + chr2L_5_16505001 chr2L_16505001 RAL-217 175 chr2L 16573628 16573660 chr2L 16573717 16573723 7 85 1.5 1.0 1.2 3.2 95 chr2L 16573628 intron CG42389 + chr2L 16573676 intron CG42389 + chr2L 16573723 intron CG42389 + chr2L_7_16570001 chr2L_16570001 RAL-217 176 chr2L 16695125 16695147 chr2L 16695208 16695226 4 82 3.0 1.5 2.2 1.2 101 chr2L 16695125 intron grp + chr2L 16695176 intron grp + chr2L 16695226 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-217 177 chr2L 16701458 16701486 chr2L 16701537 16701565 10 79 1.0 2.5 1.8 3.6 107 chr2L 16701458 intergenic not near genes chr2L 16701512 intergenic not near genes chr2L 16701565 intergenic not near genes chr2L_10_16700001 chr2L_16700001 RAL-217 178 chr2L 16728926 16728956 chr2L 16729561 16729591 4 635 1.0 1.5 1.2 1.8 665 chr2L 16728926 intergenic not near genes chr2L 16729258 intergenic not near genes chr2L 16729591 intergenic CG31812 + chr2L_4_16725001 chr2L_16725001 RAL-217 179 chr2L 16939992 16940012 chr2L 16940070 16940074 5 75 1.5 3.5 2.5 1.4 82 chr2L 16939992 intergenic not near genes chr2L 16940033 intergenic not near genes chr2L 16940074 intergenic not near genes chr2L_5_16940001 chr2L_16940001 RAL-217 180 chr2L 16971472 16971505 chr2L 16971549 16971582 10 77 1.5 2.0 1.8 3.6 110 chr2L 16971472 intergenic not near genes chr2L 16971527 intergenic not near genes chr2L 16971582 intergenic not near genes chr2L_10_16970001 chr2L_16970001 RAL-217 181 chr2L 17120844 17120863 chr2L 17120923 17120942 5 79 0.0 2.0 1.0 2.5 98 chr2L 17120844 intergenic not near genes chr2L 17120893 intergenic not near genes chr2L 17120942 intergenic not near genes chr2L_5_17120001 chr2L_17120001 RAL-217 182 chr2L 17199168 17199183 chr2L 17200634 17200650 hobo 4 1467 0.0 0.0 0.0 4.0 1482 chr2L 17199168 intron beat-IIIc - chr2L 17199909 intron beat-IIIc - chr2L 17200650 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-217 183 chr2L 17273196 17273217 chr2L 17277979 17278000 F-element 7 4783 2.5 4.5 3.5 1.6 4804 chr2L 17273196 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278000 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-217 184 chr2L 17327911 17327929 chr2L 17327996 17328015 4 86 2.0 2.5 2.2 1.2 104 chr2L 17327911 intergenic not near genes chr2L 17327963 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-217 185 chr2L 17335549 17335573 chr2L 17336715 17336739 1360 4 1166 1.5 0.5 1.0 2.0 1190 chr2L 17335549 intergenic not near genes chr2L 17336144 intergenic not near genes chr2L 17336739 intergenic not near genes chr2L_4_17335001 chr2L_17335001 RAL-217 186 chr2L 17741960 17741975 chr2L 17742036 17742051 4 76 3.0 0.5 1.8 1.4 91 chr2L 17741960 intron CadN - chr2L 17742006 intron CadN - chr2L 17742051 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-217 187 chr2L 17747993 17748022 chr2L 17748070 17748098 10 74 3.5 0.0 1.8 3.6 105 chr2L 17747993 intron CadN - chr2L 17748046 intron CadN - chr2L 17748098 intron CadN - chr2L_10_17745001 chr2L_17745001 RAL-217 188 chr2L 17880003 17880017 chr2L 17880088 17880104 5 87 2.0 3.0 2.5 1.4 101 chr2L 17880003 intergenic not near genes chr2L 17880054 intergenic not near genes chr2L 17880104 intergenic not near genes chr2L_5_17880001 chr2L_17880001 RAL-217 189 chr2L 18044251 18044278 chr2L 18044579 18044606 4 328 0.5 1.0 0.8 2.2 355 chr2L 18044251 intron rdo + chr2L 18044428 intron rdo + chr2L 18044606 intron rdo + chr2L_4_18040001 chr2L_18040001 RAL-217 190 chr2L 18051880 18051903 chr2L 18061027 18061049 roo 7 9146 3.0 3.0 3.0 1.8 9169 chr2L 18051880 intron rdo + chr2L 18056464 intron rdo + chr2L 18061049 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-217 191 chr2L 18221644 18221657 chr2L 18221722 18221735 4 78 0.0 4.0 2.0 1.3 91 chr2L 18221644 intron CG42750 - chr2L 18221690 intron CG42750 - chr2L 18221735 intron CG42750 - chr2L_4_18220001 chr2L_18220001 RAL-217 192 chr2L 18306772 18306791 chr2L 18307129 18307148 4 356 2.5 4.0 3.2 1.0 376 chr2L 18306772 intergenic not near genes chr2L 18306960 intergenic not near genes chr2L 18307148 intergenic not near genes chr2L_4_18305001 chr2L_18305001 RAL-217 193 chr2L 18315249 18315280 chr2L 18315329 18315359 17 79 1.5 2.5 2.0 5.7 110 chr2L 18315249 intergenic not near genes chr2L 18315304 intergenic not near genes chr2L 18315359 intergenic not near genes chr2L_17_18315001 chr2L_18315001 RAL-217 194 chr2L 18364262 18364283 chr2L 18364361 18364382 5 99 0.0 0.5 0.2 4.2 120 chr2L 18364262 intron Fas3 + chr2L 18364322 intron Fas3 + chr2L 18364382 intron Fas3 + chr2L_5_18360001 chr2L_18360001 RAL-217 195 chr2L 18406402 18406423 chr2L 18406493 18406514 6 92 3.0 2.5 2.8 1.6 112 chr2L 18406402 intergenic not near genes chr2L 18406458 intergenic not near genes chr2L 18406514 intergenic not near genes chr2L_6_18405001 chr2L_18405001 RAL-217 196 chr2L 18408031 18408036 chr2L 18412814 18412820 Doc 4 4784 4.5 0.0 2.2 1.2 4789 chr2L 18408031 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412820 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-217 197 chr2L 18766461 18766472 chr2L 18766582 18766593 5 121 1.5 0.0 0.8 2.8 132 chr2L 18766461 intron ham - chr2L 18766527 intron ham - chr2L 18766593 intron ham - chr2L_5_18765001 chr2L_18765001 RAL-217 198 chr2L 18898403 18898422 chr2L 18898485 18898504 5 82 3.5 1.5 2.5 1.4 101 chr2L 18898403 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898504 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-217 199 chr2L 18956684 18956716 chr2L 18956885 18956918 21 199 3.5 4.5 4.0 4.2 234 chr2L 18956684 exon CG10623 - chr2L 18956801 exon CG10623 - chr2L 18956918 exon CG10623 - chr2L_21_18955001 chr2L_18955001 RAL-217 200 chr2L 19147377 19147400 chr2L 19154412 19154435 297 4 7035 1.5 3.0 2.2 1.2 7058 chr2L 19147377 intron brat + chr2L 19150906 intron brat + chr2L 19154435 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-217 201 chr2L 19189967 19190005 chr2L 19190121 19190158 6 153 0.5 2.0 1.2 2.7 191 chr2L 19189967 intergenic pigeon +,drl + chr2L 19190062 intergenic pigeon +,drl + chr2L 19190158 intergenic drl +,pigeon + chr2L_6_19190001 chr2L_19190001 RAL-217 202 chr2L 19191778 19191798 chr2L 19191887 19191907 4 109 1.0 2.5 1.8 1.4 129 chr2L 19191778 intron drl + chr2L 19191842 intron drl + chr2L 19191907 intron drl + chr2L_4_19190001 chr2L_19190001 RAL-217 203 chr2L 19345020 19345050 chr2L 19357229 19357259 blood 9 12209 0.0 2.5 1.2 4.1 12239 chr2L 19345020 intron dnt - chr2L 19351140 intron dnt - chr2L 19357259 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-217 204 chr2L 19357551 19357567 chr2L 19357641 19357657 6 90 1.5 4.0 2.8 1.6 106 chr2L 19357551 intron dnt - chr2L 19357604 intron dnt - chr2L 19357657 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-217 205 chr2L 19372979 19372983 chr2L 19373270 19373274 4 291 1.5 1.0 1.2 1.8 295 chr2L 19372979 intergenic CG17349 + chr2L 19373126 intergenic CG17349 + chr2L 19373274 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-217 206 chr2L 19441068 19441089 chr2L 19441145 19441166 6 77 5.0 3.0 4.0 1.2 98 chr2L 19441068 intron CG10237 - chr2L 19441117 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-217 207 chr2L 19487208 19487235 chr2L 19487295 19487322 6 87 1.0 1.5 1.2 2.7 114 chr2L 19487208 intergenic CG13083 + chr2L 19487265 intergenic CG13083 + chr2L 19487322 intergenic CG13083 + chr2L_6_19485001 chr2L_19485001 RAL-217 208 chr2L 19544593 19544624 chr2L 19544668 19544701 11 74 3.5 5.5 4.5 2.0 108 chr2L 19544593 exon ref(2)P + chr2L 19544647 exon ref(2)P + chr2L 19544701 exon ref(2)P + chr2L_11_19540001 chr2L_19540001 RAL-217 209 chr2L 19620093 19620128 chr2L 19621082 19621116 jockey 11 987 7.5 3.0 5.2 1.8 1023 chr2L 19620093 intron Lar + chr2L 19620604 intron Lar + chr2L 19621116 intron Lar + chr2L_11_19620001 chr2L_19620001 RAL-217 210 chr2L 19703535 19703569 chr2L 19712671 19712705 roo 4 9136 2.0 0.5 1.2 1.8 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-217 211 chr2L 19737354 19737384 chr2L 19740823 19740838 1360 7 3467 3.5 4.0 3.8 1.5 3484 chr2L 19737354 intergenic Nf-YB + chr2L 19739096 intergenic not near genes chr2L 19740838 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-217 212 chr2L 19754871 19754897 chr2L 19754955 19754980 6 81 5.0 4.0 4.5 1.1 109 chr2L 19754871 intron CG10631 - chr2L 19754926 intron CG10631 - chr2L 19754980 intron CG10631 - chr2L_6_19750001 chr2L_19750001 RAL-217 213 chr2L 19963494 19963514 chr2L 19963560 19963567 10 66 4.0 2.5 3.2 2.4 73 chr2L 19963494 exon CG16772 + chr2L 19963530 exon CG16772 + chr2L 19963567 exon CG16772 + chr2L_10_19960001 chr2L_19960001 RAL-217 214 chr2L 19994659 19994687 chr2L 19994737 19994766 4 78 1.0 6.0 3.5 0.9 107 chr2L 19994659 intron CG43861 - chr2L 19994712 intron CG43861 - chr2L 19994766 intron CG43861 - chr2L_4_19990001 chr2L_19990001 RAL-217 215 chr2L 20085465 20085491 chr2L 20085557 20085582 8 90 2.0 2.5 2.2 2.5 117 chr2L 20085465 intron neb + chr2L 20085524 intron neb + chr2L 20085582 intron neb + chr2L_8_20085001 chr2L_20085001 RAL-217 216 chr2L 20568670 20568675 chr2L 20569059 20569065 X-element 4 389 2.0 3.0 2.5 1.1 395 chr2L 20568670 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569065 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-217 217 chr2L 20618186 20618216 chr2L 20618389 20618402 12 199 0.0 4.5 2.2 3.8 216 chr2L 20618186 intron CR44909 - chr2L 20618294 intron CR44909 - chr2L 20618402 intron,3` UTR CR44909 -,mir-288 - chr2L_12_20615001 chr2L_20615001 RAL-217 218 chr2L 20671724 20671755 chr2L 20671817 20671849 9 88 5.0 3.5 4.2 1.7 125 chr2L 20671724 intron CG31678 - chr2L 20671786 intron CG31678 - chr2L 20671849 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-217 219 chr2L 20720409 20720416 chr2L 20720477 20720477 4 72 5.5 3.5 4.5 0.7 68 chr2L 20720409 intergenic not near genes chr2L 20720443 intergenic not near genes chr2L 20720477 intergenic not near genes chr2L_4_20720001 chr2L_20720001 RAL-217 220 chr2L 20901470 20901480 chr2L 20902634 20902644 1360 4 1164 0.0 2.5 1.2 1.8 1174 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902057 intron,intron CG43739 -,sky - chr2L 20902644 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-217 221 chr2L 20911029 20911060 chr2L 20911105 20911136 8 76 3.0 4.0 3.5 1.8 107 chr2L 20911029 intron,intron CG43739 -,sky - chr2L 20911082 intron,intron CG43739 -,sky - chr2L 20911136 intron,intron CG43739 -,sky - chr2L_8_20910001 chr2L_20910001 RAL-217 222 chr2L 20976649 20976679 chr2L 20981464 20981494 X-element 7 4815 0.0 2.0 1.0 3.5 4845 chr2L 20976649 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981494 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-217 223 chr2L 20984745 20984772 chr2L 20984836 20984861 6 91 2.0 1.5 1.8 2.1 116 chr2L 20984745 intron CG42238 - chr2L 20984803 intron CG42238 - chr2L 20984861 intron CG42238 - chr2L_6_20980001 chr2L_20980001 RAL-217 224 chr2L 20991035 20991069 chr2L 20991113 20991147 11 78 3.0 0.5 1.8 3.9 112 chr2L 20991035 intron CG42238 - chr2L 20991091 intron CG42238 - chr2L 20991147 intron CG42238 - chr2L_11_20990001 chr2L_20990001 RAL-217 225 chr2L 21020287 21020309 chr2L 21023964 21023984 NOF 5 3677 1.5 6.0 3.8 1.0 3697 chr2L 21020287 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-217 226 chr2L 21041143 21041168 chr2L 21049403 21049429 Tirant 8 8261 4.5 2.5 3.5 1.8 8286 chr2L 21041143 intron CG42238 - chr2L 21045286 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-217 227 chr2L 21597031 21597056 chr2L 21604775 21604800 roo 4 7744 0.5 2.0 1.2 1.8 7769 chr2L 21597031 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604800 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-217 228 chr2L 21645586 21645616 chr2L 21645680 21645711 11 93 4.5 4.0 4.2 2.1 125 chr2L 21645586 intron Ac3 + chr2L 21645648 intron Ac3 + chr2L 21645711 intron Ac3 + chr2L_11_21645001 chr2L_21645001 RAL-217 229 chr2L 21711994 21712021 chr2L 21712072 21712074 5 70 1.0 2.0 1.5 2.0 80 chr2L 21711994 intron CG31619 + chr2L 21712034 intron CG31619 + chr2L 21712074 intron CG31619 + chr2L_5_21710001 chr2L_21710001 RAL-217 230 chr2L 21771986 21772011 chr2L 21772065 21772090 4 79 1.5 0.5 1.0 2.0 104 chr2L 21771986 intron CG31612 - chr2L 21772038 intron CG31612 - chr2L 21772090 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-217 231 chr2L 21814880 21814903 chr2L 21814977 21814986 4 94 2.5 1.0 1.8 1.4 106 chr2L 21814880 intergenic not near genes chr2L 21814933 intergenic not near genes chr2L 21814986 intergenic not near genes chr2L_4_21810001 chr2L_21810001 RAL-217 232 chr2L 21819330 21819356 chr2L 21819418 21819442 5 88 0.5 4.0 2.2 1.6 112 chr2L 21819330 intergenic CR44786 + chr2L 21819386 intergenic CR44786 + chr2L 21819442 intergenic CR44786 + chr2L_5_21815001 chr2L_21815001 RAL-217 233 chr2L 21836396 21836427 chr2L 21836484 21836517 10 89 1.5 1.5 1.5 4.0 121 chr2L 21836396 3` UTR tsh + chr2L 21836456 3` UTR tsh + chr2L 21836517 3` UTR tsh + chr2L_10_21835001 chr2L_21835001 RAL-217 234 chr2L 21966994 21967028 chr2L 21967121 21967155 6 127 3.5 0.5 2.0 2.0 161 chr2L 21966994 intergenic not near genes chr2L 21967074 intergenic not near genes chr2L 21967155 intergenic not near genes chr2L_6_21965001 chr2L_21965001 RAL-217 235 chr2L 22025827 22025852 chr2L 22025906 22025931 4 78 1.5 0.5 1.0 2.0 104 chr2L 22025827 intergenic tio + chr2L 22025879 intergenic tio + chr2L 22025931 intergenic tio + chr2L_4_22025001 chr2L_22025001 RAL-217 236 chr2L 22983943 22983973 chr2L 22984019 22984049 6 75 0.5 1.5 1.0 3.0 106 chr2L 22983943 intron cta + chr2L 22983996 intron cta + chr2L 22984049 intron cta + chr2L_6_22980001 chr2L_22980001 RAL-217 237 chr2R 529323 529356 chr2R 537948 537981 Max-element 6 8625 2.0 0.5 1.2 2.7 8658 chr2R 529323 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-217 238 chr2R 1082376 1082381 chr2R 1087127 1087129 Doc 4 4763 5.0 1.5 3.2 1.0 4753 chr2R 1082376 intron rl + chr2R 1084752 intron rl + chr2R 1087129 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-217 239 chr2R 2866025 2866031 chr2R 2866110 2866116 4 85 2.5 1.5 2.0 1.3 91 chr2R 2866025 intergenic not near genes chr2R 2866070 intergenic not near genes chr2R 2866116 intergenic not near genes chr2R_4_2865001 chr2R_2865001 RAL-217 240 chr2R 4186922 4186940 chr2R 4187270 4187287 4 348 1.5 0.5 1.0 2.0 365 chr2R 4186922 3` UTR CG40127 - chr2R 4187104 3` UTR CG40127 - chr2R 4187287 3` UTR CG40127 - chr2R_4_4185001 chr2R_4185001 RAL-217 241 chr2R 4624667 4624673 chr2R 4626547 4626578 Bica 4 1898 2.5 1.0 1.8 1.4 1911 chr2R 4624667 intergenic not near genes chr2R 4625622 intergenic not near genes chr2R 4626578 intergenic not near genes chr2R_4_4625001 chr2R_4625001 RAL-217 242 chr2R 5009000 5009020 chr2R 5009309 5009327 5 305 6.0 3.5 4.8 0.9 327 chr2R 5009000 intron Ir41a + chr2R 5009164 intron Ir41a + chr2R 5009327 intron Ir41a + chr2R_5_5005001 chr2R_5005001 RAL-217 243 chr2R 5080801 5080817 chr2R 5080892 5080907 7 91 1.0 2.0 1.5 2.8 106 chr2R 5080801 intergenic not near genes chr2R 5080854 intergenic not near genes chr2R 5080907 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-217 244 chr2R 5267607 5267628 chr2R 5267694 5267714 9 87 1.5 1.5 1.5 3.6 107 chr2R 5267607 intron d4 + chr2R 5267660 intron d4 + chr2R 5267714 intron d4 + chr2R_9_5265001 chr2R_5265001 RAL-217 245 chr2R 5472370 5472394 chr2R 5472464 5472478 6 92 0.0 2.0 1.0 3.0 108 chr2R 5472370 intron CG30440 - chr2R 5472424 intron CG30440 - chr2R 5472478 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-217 246 chr2R 5491662 5491693 chr2R 5491755 5491786 5 93 3.0 2.0 2.5 1.4 124 chr2R 5491662 intron CG30440 - chr2R 5491724 intron CG30440 - chr2R 5491786 intron CG30440 - chr2R_5_5490001 chr2R_5490001 RAL-217 247 chr2R 5664290 5664308 chr2R 5664369 5664388 9 79 0.0 2.5 1.2 4.1 98 chr2R 5664290 5` UTR CR45472 + chr2R 5664339 intron CR45472 + chr2R 5664388 intron CR45472 + chr2R_9_5660001 chr2R_5660001 RAL-217 248 chr2R 5861288 5861319 chr2R 5861409 5861439 9 115 1.5 4.5 3.0 2.2 151 chr2R 5861288 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861439 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-217 249 chr2R 5869276 5869299 chr2R 5874352 5874375 flea 5 5076 3.0 1.5 2.2 1.6 5099 chr2R 5869276 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874375 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-217 250 chr2R 6096722 6096750 chr2R 6101920 6101948 BS 11 5196 3.5 3.5 3.5 2.4 5226 chr2R 6096722 intron EcR - chr2R 6099335 intron EcR - chr2R 6101948 intron EcR - chr2R_11_6095001 chr2R_6095001 RAL-217 251 chr2R 6131297 6131319 chr2R 6131377 6131396 6 79 3.5 2.5 3.0 1.5 99 chr2R 6131297 intron EcR - chr2R 6131346 intron EcR - chr2R 6131396 intron EcR - chr2R_6_6130001 chr2R_6130001 RAL-217 252 chr2R 6494527 6494549 chr2R 6499289 6499309 F-element 6 4762 2.5 2.0 2.2 1.9 4782 chr2R 6494527 intergenic not near genes chr2R 6496918 intergenic not near genes chr2R 6499309 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-217 253 chr2R 6633203 6633224 chr2R 6633280 6633301 5 77 1.5 1.0 1.2 2.3 98 chr2R 6633203 intergenic Vha16-1 -,Trap1 - chr2R 6633252 intergenic Vha16-1 -,Trap1 - chr2R 6633301 intergenic Vha16-1 -,Trap1 - chr2R_5_6630001 chr2R_6630001 RAL-217 254 chr2R 6856132 6856160 chr2R 6856251 6856262 11 116 3.5 2.0 2.8 2.9 130 chr2R 6856132 intergenic not near genes chr2R 6856197 intergenic not near genes chr2R 6856262 intergenic not near genes chr2R_11_6855001 chr2R_6855001 RAL-217 255 chr2R 7039161 7039166 chr2R 7039439 7039465 5 291 0.5 3.5 2.0 1.7 304 chr2R 7039161 intergenic CG33914 - chr2R 7039313 intergenic CG33914 - chr2R 7039465 intergenic CG33914 - chr2R_5_7035001 chr2R_7035001 RAL-217 256 chr2R 7139945 7139950 chr2R 7141432 7141442 hopper2 4 1491 1.5 7.5 4.5 0.7 1497 chr2R 7139945 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141442 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-217 257 chr2R 7235821 7235851 chr2R 7240913 7240943 jockey 8 5092 4.0 2.5 3.2 1.9 5122 chr2R 7235821 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-217 258 chr2R 7319266 7319289 chr2R 7319339 7319370 7 78 1.5 2.5 2.0 2.3 104 chr2R 7319266 3` UTR Dscam1 - chr2R 7319318 3` UTR Dscam1 - chr2R 7319370 3` UTR Dscam1 - chr2R_7_7315001 chr2R_7315001 RAL-217 259 chr2R 7418140 7418166 chr2R 7418219 7418245 5 79 1.5 1.5 1.5 2.0 105 chr2R 7418140 intergenic not near genes chr2R 7418192 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_5_7415001 chr2R_7415001 RAL-217 260 chr2R 7567669 7567690 chr2R 7567752 7567774 8 84 1.5 2.0 1.8 2.9 105 chr2R 7567669 intron Vps13 + chr2R 7567722 intron Vps13 + chr2R 7567774 intron Vps13 + chr2R_8_7565001 chr2R_7565001 RAL-217 261 chr2R 7642874 7642892 chr2R 7642954 7642972 4 80 1.5 4.0 2.8 1.1 98 chr2R 7642874 intron CG43340 + chr2R 7642923 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_4_7640001 chr2R_7640001 RAL-217 262 chr2R 7869191 7869216 chr2R 7873977 7874002 Doc 5 4784 2.0 3.5 2.8 1.3 4811 chr2R 7869191 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874002 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-217 263 chr2R 8015653 8015682 chr2R 8017675 8017705 5 2022 0.0 4.0 2.0 1.7 2052 chr2R 8015653 intergenic mir-4981 + chr2R 8016679 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-217 264 chr2R 8089253 8089271 chr2R 8089339 8089357 4 86 1.0 1.0 1.0 2.0 104 chr2R 8089253 3` UTR sut2 + chr2R 8089305 intergenic sut2 +,sut3 + chr2R 8089357 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-217 265 chr2R 8105936 8105957 chr2R 8106027 8106036 10 90 4.0 4.5 4.2 1.9 100 chr2R 8105936 5` UTR Cul4 - chr2R 8105986 intron Cul4 - chr2R 8106036 5` UTR Cul4 - chr2R_10_8105001 chr2R_8105001 RAL-217 266 chr2R 8145132 8145157 chr2R 8145215 8145240 7 83 2.5 2.0 2.2 2.2 108 chr2R 8145132 intron Lpin - chr2R 8145186 intron Lpin - chr2R 8145240 intron Lpin - chr2R_7_8145001 chr2R_8145001 RAL-217 267 chr2R 8160934 8160952 chr2R 8161024 8161042 1360 10 90 4.5 5.5 5.0 1.7 108 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161042 intron CG8708 - chr2R_10_8160001 chr2R_8160001 RAL-217 268 chr2R 8188205 8188208 chr2R 8188300 8188303 4 95 1.0 2.0 1.5 1.6 98 chr2R 8188205 intron LRP1 + chr2R 8188254 intron LRP1 + chr2R 8188303 intron LRP1 + chr2R_4_8185001 chr2R_8185001 RAL-217 269 chr2R 8249560 8249598 chr2R 8249642 8249680 10 82 4.0 0.5 2.2 3.1 120 chr2R 8249560 5` UTR CG44439 - chr2R 8249620 intergenic CG44439 - chr2R 8249680 intergenic CG44439 - chr2R_10_8245001 chr2R_8245001 RAL-217 270 chr2R 8279299 8279331 chr2R 8279391 8279423 7 91 1.5 1.0 1.2 3.2 124 chr2R 8279299 intergenic not near genes chr2R 8279361 intergenic not near genes chr2R 8279423 intergenic not near genes chr2R_7_8275001 chr2R_8275001 RAL-217 271 chr2R 8330860 8330881 chr2R 8331346 8331366 roo 4 486 4.5 2.0 3.2 1.0 506 chr2R 8330860 intron pdm3 + chr2R 8331113 intron pdm3 + chr2R 8331366 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-217 272 chr2R 8398215 8398238 chr2R 8402995 8403019 Doc 4 4780 2.5 2.0 2.2 1.2 4804 chr2R 8398215 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403019 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-217 273 chr2R 8452033 8452063 chr2R 8452116 8452146 9 82 2.0 1.5 1.8 3.2 113 chr2R 8452033 intergenic Mal-A1 - chr2R 8452090 intergenic Mal-A1 - chr2R 8452146 intergenic Mal-A1 - chr2R_9_8450001 chr2R_8450001 RAL-217 274 chr2R 8722764 8722790 chr2R 8723005 8723007 pogo 14 238 1.0 4.5 2.8 3.7 243 chr2R 8722764 intron CG14767 - chr2R 8722886 intron CG14767 - chr2R 8723007 intron CG14767 - chr2R_14_8720001 chr2R_8720001 RAL-217 275 chr2R 8764122 8764133 chr2R 8764271 8764281 7 149 3.5 3.0 3.2 1.7 159 chr2R 8764122 intergenic not near genes chr2R 8764202 intergenic not near genes chr2R 8764281 intergenic not near genes chr2R_7_8760001 chr2R_8760001 RAL-217 276 chr2R 8801318 8801355 chr2R 8801408 8801417 10 87 1.5 0.5 1.0 5.0 99 chr2R 8801318 intron sns + chr2R 8801368 intron sns + chr2R 8801417 intron sns + chr2R_10_8800001 chr2R_8800001 RAL-217 277 chr2R 8941573 8941594 chr2R 8941666 8941687 9 93 1.0 3.0 2.0 3.0 114 chr2R 8941573 intergenic CR44273 +,CG13748 + chr2R 8941630 5` UTR CR44273 + chr2R 8941687 5` UTR CR44273 + chr2R_9_8940001 chr2R_8940001 RAL-217 278 chr2R 8976826 8976839 chr2R 8976921 8976934 7 95 1.5 2.0 1.8 2.5 108 chr2R 8976826 intron CG8213 - chr2R 8976880 intron CG8213 - chr2R 8976934 intron CG8213 - chr2R_7_8975001 chr2R_8975001 RAL-217 279 chr2R 8976842 8976848 chr2R 8976919 8976943 4 90 1.0 2.0 1.5 1.6 101 chr2R 8976842 intron CG8213 - chr2R 8976892 intron CG8213 - chr2R 8976943 intron CG8213 - chr2R_4_8975001 chr2R_8975001 RAL-217 280 chr2R 9161972 9162003 chr2R 9162057 9162087 5 84 1.0 1.0 1.0 2.5 115 chr2R 9161972 5` UTR CR44283 + chr2R 9162030 intergenic CG8046 -,CR44283 + chr2R 9162087 3` UTR CG8046 - chr2R_5_9160001 chr2R_9160001 RAL-217 281 chr2R 9191905 9191935 chr2R 9191991 9192021 12 86 0.0 1.5 0.8 6.7 116 chr2R 9191905 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191963 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192021 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_12_9190001 chr2R_9190001 RAL-217 282 chr2R 9212701 9212712 chr2R 9213187 9213198 roo 6 485 3.0 5.5 4.2 1.2 497 chr2R 9212701 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213198 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-217 283 chr2R 9227303 9227328 chr2R 9227379 9227399 5 75 0.0 0.0 0.0 5.0 96 chr2R 9227303 intergenic hig - chr2R 9227351 intergenic hig - chr2R 9227399 intergenic hig - chr2R_5_9225001 chr2R_9225001 RAL-217 284 chr2R 9368130 9368150 chr2R 9368206 9368226 10 75 3.5 0.5 2.0 3.3 96 chr2R 9368130 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368226 intron CG13954 - chr2R_10_9365001 chr2R_9365001 RAL-217 285 chr2R 9617783 9617809 chr2R 9618041 9618067 4 258 3.5 0.0 1.8 1.4 284 chr2R 9617783 intron Mmp2 - chr2R 9617925 intron Mmp2 - chr2R 9618067 intron Mmp2 - chr2R_4_9615001 chr2R_9615001 RAL-217 286 chr2R 9945436 9945453 chr2R 9945630 9945638 BS 4 193 1.0 0.0 0.5 2.7 202 chr2R 9945436 intron Mef2 - chr2R 9945537 intron Mef2 - chr2R 9945638 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-217 287 chr2R 10005855 10005876 chr2R 10007018 10007039 1360 15 1164 5.0 5.5 5.2 2.4 1184 chr2R 10005855 intron Pka-R2 - chr2R 10006447 intron Pka-R2 - chr2R 10007039 intron Pka-R2 - chr2R_15_10005001 chr2R_10005001 RAL-217 288 chr2R 10167109 10167145 chr2R 10167185 10167214 15 71 4.0 5.5 4.8 2.6 105 chr2R 10167109 intron KCNQ - chr2R 10167162 intron KCNQ - chr2R 10167214 intron KCNQ - chr2R_15_10165001 chr2R_10165001 RAL-217 289 chr2R 10168356 10168361 chr2R 10168433 10168438 4 76 2.0 1.5 1.8 1.4 82 chr2R 10168356 intron KCNQ - chr2R 10168397 intron KCNQ - chr2R 10168438 intron KCNQ - chr2R_4_10165001 chr2R_10165001 RAL-217 290 chr2R 10313316 10313335 chr2R 10313404 10313423 4 88 0.0 0.5 0.2 3.3 107 chr2R 10313316 intergenic not near genes chr2R 10313370 intergenic not near genes chr2R 10313423 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-217 291 chr2R 10352672 10352699 chr2R 10352749 10352771 5 76 1.5 2.5 2.0 1.7 99 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352722 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352771 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-217 292 chr2R 10454099 10454129 chr2R 10454175 10454206 7 77 2.5 1.5 2.0 2.3 107 chr2R 10454099 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_7_10450001 chr2R_10450001 RAL-217 293 chr2R 10457308 10457335 chr2R 10457393 10457420 9 85 1.5 2.5 2.0 3.0 112 chr2R 10457308 intron,intron Galphao +,Cyp49a1 - chr2R 10457364 intron,intron Galphao +,Cyp49a1 - chr2R 10457420 intron,intron Galphao +,Cyp49a1 - chr2R_9_10455001 chr2R_10455001 RAL-217 294 chr2R 10469023 10469053 chr2R 10469149 10469179 9 125 2.0 2.0 2.0 3.0 156 chr2R 10469023 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469179 intron CG11777 + chr2R_9_10465001 chr2R_10465001 RAL-217 295 chr2R 10477058 10477083 chr2R 10477314 10477350 5 264 4.0 0.0 2.0 1.7 292 chr2R 10477058 intron whd - chr2R 10477204 intron whd - chr2R 10477350 intron whd - chr2R_5_10475001 chr2R_10475001 RAL-217 296 chr2R 10536588 10536608 chr2R 10536876 10536895 7 288 1.5 0.0 0.8 3.9 307 chr2R 10536588 intron,3` UTR lola -,snoRNA:lola-a - chr2R 10536742 intron lola - chr2R 10536895 intron,3` UTR lola -,snoRNA:lola-b - chr2R_7_10535001 chr2R_10535001 RAL-217 297 chr2R 10653208 10653236 chr2R 10653287 10653315 4 77 0.5 1.0 0.8 2.2 107 chr2R 10653208 intergenic not near genes chr2R 10653262 intergenic not near genes chr2R 10653315 intergenic not near genes chr2R_4_10650001 chr2R_10650001 RAL-217 298 chr2R 10761561 10761582 chr2R 10761715 10761735 4 154 1.0 0.5 0.8 2.2 174 chr2R 10761561 intron,5` UTR CG33144 -,CR43605 + chr2R 10761648 intron,5` UTR CG33144 -,CR43605 + chr2R 10761735 intron CG33144 - chr2R_4_10760001 chr2R_10760001 RAL-217 299 chr2R 10783675 10783701 chr2R 10783844 10783868 7 169 0.5 0.5 0.5 4.7 193 chr2R 10783675 intron,intron CG33144 -,CR44299 + chr2R 10783772 intron,intron CG33144 -,CR44299 + chr2R 10783868 intron,intron CG33144 -,CR44299 + chr2R_7_10780001 chr2R_10780001 RAL-217 300 chr2R 10799776 10799788 chr2R 10799864 10799876 6 88 5.5 2.5 4.0 1.2 100 chr2R 10799776 intergenic not near genes chr2R 10799826 intergenic not near genes chr2R 10799876 intergenic not near genes chr2R_6_10795001 chr2R_10795001 RAL-217 301 chr2R 10827336 10827360 chr2R 10827424 10827446 13 85 3.0 3.5 3.2 3.1 110 chr2R 10827336 exon CG12325 + chr2R 10827391 3` UTR CG12325 + chr2R 10827446 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_13_10825001 chr2R_10825001 RAL-217 302 chr2R 10930904 10930922 chr2R 10931301 10931310 6 396 2.5 5.5 4.0 1.2 406 chr2R 10930904 intergenic not near genes chr2R 10931107 intergenic not near genes chr2R 10931310 intergenic not near genes chr2R_6_10930001 chr2R_10930001 RAL-217 303 chr2R 10937805 10937832 chr2R 10937943 10937970 5 138 0.0 2.5 1.2 2.3 165 chr2R 10937805 intergenic not near genes chr2R 10937888 intergenic not near genes chr2R 10937970 intergenic Spn47C - chr2R_5_10935001 chr2R_10935001 RAL-217 304 chr2R 10977306 10977335 chr2R 10977392 10977421 6 86 2.5 3.0 2.8 1.6 115 chr2R 10977306 intergenic not near genes chr2R 10977364 intergenic not near genes chr2R 10977421 intergenic not near genes chr2R_6_10975001 chr2R_10975001 RAL-217 305 chr2R 10992955 10992980 chr2R 10993041 10993065 7 85 3.0 2.0 2.5 2.0 110 chr2R 10992955 intron luna - chr2R 10993010 intron luna - chr2R 10993065 intron luna - chr2R_7_10990001 chr2R_10990001 RAL-217 306 chr2R 10993264 10993295 chr2R 10993394 10993426 6 131 2.0 1.0 1.5 2.4 162 chr2R 10993264 intron luna - chr2R 10993345 intron luna - chr2R 10993426 intron luna - chr2R_6_10990001 chr2R_10990001 RAL-217 307 chr2R 11058780 11058810 chr2R 11058859 11058889 7 75 0.5 3.5 2.0 2.3 109 chr2R 11058780 intron luna - chr2R 11058834 intron luna - chr2R 11058889 intron luna - chr2R_7_11055001 chr2R_11055001 RAL-217 308 chr2R 11071002 11071013 chr2R 11071126 11071135 6 125 5.0 6.0 5.5 0.9 133 chr2R 11071002 intron luna - chr2R 11071068 intron luna - chr2R 11071135 intron luna - chr2R_6_11070001 chr2R_11070001 RAL-217 309 chr2R 11086390 11086406 chr2R 11086466 11086482 9 76 3.5 3.5 3.5 2.0 92 chr2R 11086390 intron,intron,3` UTR luna -,CG43188 +,CG43189 - chr2R 11086436 intron,intron,3` UTR luna -,CG43188 +,CG43189 - chr2R 11086482 intron,intron,exon luna -,CG43188 +,CG43189 - chr2R_9_11085001 chr2R_11085001 RAL-217 310 chr2R 11095609 11095880 chr2R 11095709 11095963 8 92 6.5 4.5 5.5 1.2 354 chr2R 11095609 intron luna - chr2R 11095786 intron luna - chr2R 11095963 intron luna - chr2R_8_11095001 chr2R_11095001 RAL-217 311 chr2R 11207819 11207847 chr2R 11208012 11208040 BS 4 193 4.0 0.5 2.2 1.2 221 chr2R 11207819 intron shn + chr2R 11207930 intron shn + chr2R 11208040 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-217 312 chr2R 11421681 11421699 chr2R 11421746 11421779 5 77 0.5 0.0 0.2 4.2 98 chr2R 11421681 intron Drip - chr2R 11421730 intron Drip - chr2R 11421779 intron Drip - chr2R_5_11420001 chr2R_11420001 RAL-217 313 chr2R 11472652 11472668 chr2R 11473848 11473865 pogo 5 1197 2.5 1.5 2.0 1.7 1213 chr2R 11472652 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473865 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-217 314 chr2R 11568723 11568733 chr2R 11568833 11568843 6 110 0.0 0.0 0.0 6.0 120 chr2R 11568723 intergenic not near genes chr2R 11568783 intergenic not near genes chr2R 11568843 intergenic not near genes chr2R_6_11565001 chr2R_11565001 RAL-217 315 chr2R 11683439 11683461 chr2R 11683523 11683545 4 84 5.0 1.0 3.0 1.0 106 chr2R 11683439 intron Buffy + chr2R 11683492 intron Buffy + chr2R 11683545 intron Buffy + chr2R_4_11680001 chr2R_11680001 RAL-217 316 chr2R 11861991 11862021 chr2R 11862076 11862106 4 85 0.0 0.0 0.0 4.0 115 chr2R 11861991 3` UTR CG34230 + chr2R 11862048 intergenic CG34230 +,TwdlBeta - chr2R 11862106 intergenic CG34230 +,TwdlBeta - chr2R_4_11860001 chr2R_11860001 RAL-217 317 chr2R 11970822 11970855 chr2R 11970906 11970939 10 83 1.5 3.0 2.2 3.1 117 chr2R 11970822 5` UTR CG8290 + chr2R 11970880 5` UTR CG8290 + chr2R 11970939 5` UTR CG8290 + chr2R_10_11970001 chr2R_11970001 RAL-217 318 chr2R 11994958 11994971 chr2R 11995048 11995061 5 90 1.0 0.0 0.5 3.3 103 chr2R 11994958 3` UTR CR45319 - chr2R 11995010 3` UTR,5` UTR CR45319 -,CR45318 + chr2R 11995061 3` UTR,5` UTR CR45319 -,CR45318 + chr2R_5_11995001 chr2R_11995001 RAL-217 319 chr2R 12120406 12120434 chr2R 12120485 12120495 4 76 2.0 2.5 2.2 1.2 89 chr2R 12120406 intergenic not near genes chr2R 12120450 intergenic not near genes chr2R 12120495 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-217 320 chr2R 12124843 12124862 chr2R 12124927 12124946 5 84 1.0 3.5 2.2 1.6 103 chr2R 12124843 intergenic not near genes chr2R 12124894 intergenic not near genes chr2R 12124946 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-217 321 chr2R 12187471 12187508 chr2R 12190087 12190124 47 2619 114.0 70.0 92.0 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_47_12185001 chr2R_12185001 RAL-217 322 chr2R 12210148 12210162 chr2R 12210215 12210243 5 78 3.0 1.5 2.2 1.6 95 chr2R 12210148 exon Sr-CII - chr2R 12210196 intron Sr-CII - chr2R 12210243 intron Sr-CII - chr2R_5_12210001 chr2R_12210001 RAL-217 323 chr2R 12363383 12363412 chr2R 12363814 12363844 7 432 2.0 4.5 3.2 1.7 461 chr2R 12363383 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363844 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-217 324 chr2R 12417464 12417484 chr2R 12417542 12417564 8 78 3.0 6.0 4.5 1.5 100 chr2R 12417464 exon CG13157 + chr2R 12417514 exon CG13157 + chr2R 12417564 exon CG13157 + chr2R_8_12415001 chr2R_12415001 RAL-217 325 chr2R 12492104 12492122 chr2R 12492190 12492216 7 91 3.5 0.5 2.0 2.3 112 chr2R 12492104 intron fdl - chr2R 12492160 intron fdl - chr2R 12492216 intron fdl - chr2R_7_12490001 chr2R_12490001 RAL-217 326 chr2R 12501691 12501724 chr2R 12503852 12503886 Rt1c 7 2161 1.0 5.0 3.0 1.8 2195 chr2R 12501691 intron fdl - chr2R 12502788 intron fdl - chr2R 12503886 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-217 327 chr2R 12504147 12504180 chr2R 12504222 12504257 11 75 2.0 5.0 3.5 2.4 110 chr2R 12504147 intron fdl - chr2R 12504202 intron fdl - chr2R 12504257 intron fdl - chr2R_11_12500001 chr2R_12500001 RAL-217 328 chr2R 12527282 12527290 chr2R 12527491 12527499 4 209 1.0 2.0 1.5 1.6 217 chr2R 12527282 intergenic not near genes chr2R 12527390 intergenic not near genes chr2R 12527499 intergenic not near genes chr2R_4_12525001 chr2R_12525001 RAL-217 329 chr2R 12540489 12540497 chr2R 12540565 12540580 6 80 1.5 4.0 2.8 1.6 91 chr2R 12540489 intron fra + chr2R 12540534 intron fra + chr2R 12540580 intron fra + chr2R_6_12540001 chr2R_12540001 RAL-217 330 chr2R 12789309 12789327 chr2R 12797657 12797690 roo 7 8360 3.5 2.5 3.0 1.8 8381 chr2R 12789309 intron,3` UTR sca +,CR45137 - chr2R 12793500 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-217 331 chr2R 12819461 12819479 chr2R 12824530 12824548 jockey 5 5069 1.5 2.5 2.0 1.7 5087 chr2R 12819461 intergenic not near genes chr2R 12822004 intergenic not near genes chr2R 12824548 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-217 332 chr2R 13136842 13136862 chr2R 13141638 13141659 Doc 6 4797 4.0 3.0 3.5 1.3 4817 chr2R 13136842 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141659 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-217 333 chr2R 13438876 13438893 chr2R 13440194 13440211 5 1318 6.5 23.5 15.0 0.3 1335 chr2R 13438876 5` UTR CG42321 - chr2R 13439544 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_5_13435001 chr2R_13435001 RAL-217 334 chr2R 13721205 13721227 chr2R 13721288 13721310 11 83 8.0 7.0 7.5 1.3 105 chr2R 13721205 intron fas + chr2R 13721258 intron fas + chr2R 13721310 intron fas + chr2R_11_13720001 chr2R_13720001 RAL-217 335 chr2R 13749500 13749529 chr2R 13749589 13749617 8 89 3.0 0.5 1.8 2.9 117 chr2R 13749500 intergenic fas + chr2R 13749558 intergenic fas + chr2R 13749617 intergenic fas + chr2R_8_13745001 chr2R_13745001 RAL-217 336 chr2R 13768980 13769009 chr2R 13769079 13769108 8 96 3.5 2.0 2.8 2.1 128 chr2R 13768980 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-217 337 chr2R 13905603 13905633 chr2R 13907585 13907606 Rt1a 9 1980 2.5 4.0 3.2 2.1 2003 chr2R 13905603 intron shot - chr2R 13906604 intron shot - chr2R 13907606 intron shot - chr2R_9_13905001 chr2R_13905001 RAL-217 338 chr2R 13942782 13942810 chr2R 13942875 13942875 6 86 1.0 3.5 2.2 1.9 93 chr2R 13942782 intron DJ-1alpha - chr2R 13942828 exon DJ-1alpha - chr2R 13942875 exon DJ-1alpha - chr2R_6_13940001 chr2R_13940001 RAL-217 339 chr2R 14393873 14393893 chr2R 14393958 14393978 7 85 1.5 2.0 1.8 2.5 105 chr2R 14393873 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14393978 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-217 340 chr2R 14467313 14467326 chr2R 14476469 14476484 roo 7 9158 1.0 3.5 2.2 2.2 9171 chr2R 14467313 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476484 5` UTR CR44462 + chr2R_7_14470001 chr2R_14470001 RAL-217 341 chr2R 14538963 14538987 chr2R 14539039 14539062 5 75 3.5 6.5 5.0 0.8 99 chr2R 14538963 intron ttv + chr2R 14539012 intron ttv + chr2R 14539062 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-217 342 chr2R 14566447 14566476 chr2R 14566533 14566563 7 87 2.0 3.0 2.5 2.0 116 chr2R 14566447 intron ttv + chr2R 14566505 intron ttv + chr2R 14566563 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-217 343 chr2R 14803477 14803506 chr2R 14803557 14803586 6 80 1.0 1.5 1.2 2.7 109 chr2R 14803477 intron kn - chr2R 14803532 intron kn - chr2R 14803586 intron kn - chr2R_6_14800001 chr2R_14800001 RAL-217 344 chr2R 14922148 14922174 chr2R 14922223 14922250 9 74 1.5 3.0 2.2 2.8 102 chr2R 14922148 intron CG10249 - chr2R 14922199 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-217 345 chr2R 15004727 15004753 chr2R 15005056 15005082 jockey 5 329 3.0 4.0 3.5 1.1 355 chr2R 15004727 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005082 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-217 346 chr2R 15015461 15015484 chr2R 15022885 15022908 mdg1 5 7422 2.0 2.5 2.2 1.6 7447 chr2R 15015461 intron hbs + chr2R 15019184 intron hbs + chr2R 15022908 intron hbs + chr2R_5_15015001 chr2R_15015001 RAL-217 347 chr2R 15065618 15065644 chr2R 15065696 15065708 8 73 2.0 3.5 2.8 2.1 90 chr2R 15065618 intergenic not near genes chr2R 15065663 intergenic not near genes chr2R 15065708 intergenic not near genes chr2R_8_15065001 chr2R_15065001 RAL-217 348 chr2R 15119316 15119342 chr2R 15127797 15127822 Tirant 6 8479 4.5 3.0 3.8 1.2 8506 chr2R 15119316 intron chn + chr2R 15123569 intron chn + chr2R 15127822 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-217 349 chr2R 15201244 15201263 chr2R 15201335 15201353 4 91 1.0 2.5 1.8 1.4 109 chr2R 15201244 intergenic CG11807 +,GPHR - chr2R 15201298 5` UTR CG11807 + chr2R 15201353 5` UTR CG11807 + chr2R_4_15200001 chr2R_15200001 RAL-217 350 chr2R 15295863 15296161 chr2R 15296010 15296244 6 136 3.5 4.0 3.8 1.2 381 chr2R 15295863 intron Trpm - chr2R 15296054 intron Trpm - chr2R 15296244 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-217 351 chr2R 15296164 15296172 chr2R 15296247 15296251 4 81 2.0 1.0 1.5 1.6 87 chr2R 15296164 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296251 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-217 352 chr2R 15440119 15440148 chr2R 15440234 15440263 10 113 3.5 0.5 2.0 3.3 144 chr2R 15440119 intron CG43729 + chr2R 15440191 intron CG43729 + chr2R 15440263 intron CG43729 + chr2R_10_15440001 chr2R_15440001 RAL-217 353 chr2R 15558394 15558572 chr2R 15558493 15558651 16 88 3.0 3.0 3.0 4.0 257 chr2R 15558394 intron CG12963 + chr2R 15558522 intron CG12963 + chr2R 15558651 intron CG12963 + chr2R_16_15555001 chr2R_15555001 RAL-217 354 chr2R 15558702 15558729 chr2R 15558817 15558843 5 115 2.0 1.0 1.5 2.0 141 chr2R 15558702 intron CG12963 + chr2R 15558772 intron CG12963 + chr2R 15558843 intron CG12963 + chr2R_5_15555001 chr2R_15555001 RAL-217 355 chr2R 15685372 15685395 chr2R 15685475 15685498 5 101 2.0 4.0 3.0 1.2 126 chr2R 15685372 intron,exon Ranbp11 +,CG30082 - chr2R 15685435 intron,intron Ranbp11 +,CG30082 - chr2R 15685498 intron,intron Ranbp11 +,CG30082 - chr2R_5_15685001 chr2R_15685001 RAL-217 356 chr2R 16054951 16054959 chr2R 16055033 16055040 4 82 5.0 6.0 5.5 0.6 89 chr2R 16054951 intron CG8405 + chr2R 16054996 intron CG8405 + chr2R 16055040 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-217 357 chr2R 16131219 16131254 chr2R 16131313 16131348 5 94 2.0 1.0 1.5 2.0 129 chr2R 16131219 intron spin + chr2R 16131284 intron spin + chr2R 16131348 intron spin + chr2R_5_16130001 chr2R_16130001 RAL-217 358 chr2R 16512776 16512802 chr2R 16513149 16513175 6 373 4.0 4.0 4.0 1.2 399 chr2R 16512776 intron Sema-2a + chr2R 16512976 intron Sema-2a + chr2R 16513175 intron Sema-2a + chr2R_6_16510001 chr2R_16510001 RAL-217 359 chr2R 16619976 16620002 chr2R 16620057 16620082 7 81 0.5 0.0 0.2 5.8 106 chr2R 16619976 intron CG5065 + chr2R 16620029 intron CG5065 + chr2R 16620082 intron CG5065 + chr2R_7_16620001 chr2R_16620001 RAL-217 360 chr2R 16737135 16737164 chr2R 16737235 16737258 11 95 4.0 4.0 4.0 2.2 123 chr2R 16737135 3` UTR CG43104 - chr2R 16737196 3` UTR CG43104 - chr2R 16737258 exon CG43104 - chr2R_11_16735001 chr2R_16735001 RAL-217 361 chr2R 16972860 16972880 chr2R 16972941 16972961 5 81 0.5 3.5 2.0 1.7 101 chr2R 16972860 intergenic not near genes chr2R 16972910 intergenic not near genes chr2R 16972961 intergenic not near genes chr2R_5_16970001 chr2R_16970001 RAL-217 362 chr2R 16978484 16978504 chr2R 16978571 16978591 10 87 3.0 1.5 2.2 3.1 107 chr2R 16978484 intron Cbp53E + chr2R 16978538 intron Cbp53E + chr2R 16978591 intron Cbp53E + chr2R_10_16975001 chr2R_16975001 RAL-217 363 chr2R 17147247 17147267 chr2R 17152278 17152298 jockey 4 5031 2.5 4.5 3.5 0.9 5051 chr2R 17147247 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152298 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-217 364 chr2R 17226435 17226467 chr2R 17226779 17226809 4 343 2.0 1.0 1.5 1.6 374 chr2R 17226435 intron mbl + chr2R 17226622 intron mbl + chr2R 17226809 intron mbl + chr2R_4_17225001 chr2R_17225001 RAL-217 365 chr2R 17236506 17236538 chr2R 17241710 17241742 copia 9 5204 3.0 2.0 2.5 2.6 5236 chr2R 17236506 intron mbl + chr2R 17239124 intron mbl + chr2R 17241742 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-217 366 chr2R 17661552 17661579 chr2R 17661632 17661657 5 75 3.0 5.0 4.0 1.0 105 chr2R 17661552 intron CCHa1-R - chr2R 17661604 intron CCHa1-R - chr2R 17661657 intron CCHa1-R - chr2R_5_17660001 chr2R_17660001 RAL-217 367 chr2R 17709987 17710119 chr2R 17710078 17710197 4 80 0.0 0.0 0.0 4.0 210 chr2R 17709987 intron CG6424 - chr2R 17710092 intron CG6424 - chr2R 17710197 intron CG6424 - chr2R_4_17710001 chr2R_17710001 RAL-217 368 chr2R 17784029 17784057 chr2R 17784265 17784298 pogo 4 238 0.5 5.0 2.8 1.1 269 chr2R 17784029 intergenic mir-31a - chr2R 17784164 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_4_17780001 chr2R_17780001 RAL-217 369 chr2R 18289440 18289454 chr2R 18289542 18289556 9 101 0.5 5.5 3.0 2.2 116 chr2R 18289440 intron,intron sbb -,CG14502 + chr2R 18289498 intron,intron sbb -,CG14502 + chr2R 18289556 exon,intron sbb -,CG14502 + chr2R_9_18285001 chr2R_18285001 RAL-217 370 chr2R 18358393 18358420 chr2R 18372605 18372629 roo 7 14212 0.5 0.0 0.2 5.8 14236 chr2R 18358393 intergenic not near genes chr2R 18365511 intergenic not near genes chr2R 18372629 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-217 371 chr2R 18480916 18480947 chr2R 18481235 18481266 7 319 3.0 2.5 2.8 1.8 350 chr2R 18480916 intron CG30116 - chr2R 18481091 intron CG30116 - chr2R 18481266 intron CG30116 - chr2R_7_18480001 chr2R_18480001 RAL-217 372 chr2R 18534932 18534968 chr2R 18535011 18535046 14 77 2.5 0.5 1.5 5.6 114 chr2R 18534932 3` UTR CG10924 + chr2R 18534989 3` UTR CG10924 + chr2R 18535046 3` UTR CG10924 + chr2R_14_18530001 chr2R_18530001 RAL-217 373 chr2R 18575806 18575831 chr2R 18581988 18582018 3S18 10 6186 1.5 4.5 3.0 2.5 6212 chr2R 18575806 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_10_18575001 chr2R_18575001 RAL-217 374 chr2R 18590875 18590897 chr2R 18600026 18600049 roo 10 9151 3.5 2.5 3.0 2.5 9174 chr2R 18590875 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600049 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-217 375 chr2R 18900716 18900732 chr2R 18901022 18901038 4 306 2.5 2.0 2.2 1.2 322 chr2R 18900716 intron sano + chr2R 18900877 intron sano + chr2R 18901038 intron sano + chr2R_4_18900001 chr2R_18900001 RAL-217 376 chr2R 18953160 18953183 chr2R 18953247 18953269 6 87 3.5 0.0 1.8 2.1 109 chr2R 18953160 intron sano + chr2R 18953214 intron sano + chr2R 18953269 intron sano + chr2R_6_18950001 chr2R_18950001 RAL-217 377 chr2R 19384892 19384909 chr2R 19384968 19384979 5 73 1.0 1.0 1.0 2.5 87 chr2R 19384892 3` UTR CG10073 + chr2R 19384936 3` UTR CG10073 + chr2R 19384979 intergenic CG10073 + chr2R_5_19380001 chr2R_19380001 RAL-217 378 chr2R 19504616 19504629 chr2R 19504696 19504709 4 80 1.0 2.5 1.8 1.4 93 chr2R 19504616 intergenic CG11007 +,CR44472 + chr2R 19504662 intergenic CG11007 +,CR44472 + chr2R 19504709 intergenic CR44472 +,CG11007 + chr2R_4_19500001 chr2R_19500001 RAL-217 379 chr2R 19957433 19957461 chr2R 19962631 19962663 copia 9 5200 2.0 1.5 1.8 3.2 5230 chr2R 19957433 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962663 intergenic not near genes chr2R_9_19960001 chr2R_19960001 RAL-217 380 chr2R 20069263 20069275 chr2R 20071893 20071904 opus 5 2630 2.5 4.5 3.5 1.1 2641 chr2R 20069263 intergenic not near genes chr2R 20070584 intergenic not near genes chr2R 20071904 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-217 381 chr2R 20405085 20405113 chr2R 20406000 20406028 11 915 2.0 5.5 3.8 2.3 943 chr2R 20405085 intergenic not near genes chr2R 20405556 intergenic not near genes chr2R 20406028 intergenic not near genes chr2R_11_20405001 chr2R_20405001 RAL-217 382 chr2R 20490547 20490556 chr2R 20490627 20490636 5 80 5.0 4.5 4.8 0.9 89 chr2R 20490547 intergenic CR44643 - chr2R 20490592 intergenic CR44643 - chr2R 20490636 intergenic CR44643 - chr2R_5_20490001 chr2R_20490001 RAL-217 383 chr2R 20523048 20523070 chr2R 20523156 20523181 4 110 2.5 2.5 2.5 1.1 133 chr2R 20523048 intergenic not near genes chr2R 20523114 intergenic not near genes chr2R 20523181 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-217 384 chr2R 20739459 20739474 chr2R 20744227 20744242 F-element 4 4768 2.0 5.0 3.5 0.9 4783 chr2R 20739459 intron dpr + chr2R 20741850 intron dpr + chr2R 20744242 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-217 385 chr2R 20863124 20863133 chr2R 20863210 20863219 7 85 5.0 1.5 3.2 1.7 95 chr2R 20863124 intergenic not near genes chr2R 20863172 intergenic not near genes chr2R 20863219 intergenic not near genes chr2R_7_20860001 chr2R_20860001 RAL-217 386 chr2R 20873146 20873180 chr2R 20873322 20873330 12 165 3.0 1.5 2.2 3.8 184 chr2R 20873146 intron Ipk1 + chr2R 20873238 intron Ipk1 + chr2R 20873330 intron Ipk1 + chr2R_12_20870001 chr2R_20870001 RAL-217 387 chr2R 20962910 20962931 chr2R 20963008 20963029 6 98 1.0 2.0 1.5 2.4 119 chr2R 20962910 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963029 intergenic not near genes chr2R_6_20960001 chr2R_20960001 RAL-217 388 chr2R 21151123 21151146 chr2R 21153755 21153778 opus 5 2633 1.5 2.5 2.0 1.7 2655 chr2R 21151123 intron CG30389 - chr2R 21152450 intron CG30389 - chr2R 21153778 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-217 389 chr2R 21188219 21188230 chr2R 21188300 21188311 4 81 1.0 1.0 1.0 2.0 92 chr2R 21188219 exon tud + chr2R 21188265 intron tud + chr2R 21188311 intron tud + chr2R_4_21185001 chr2R_21185001 RAL-217 390 chr2R 21368083 21368109 chr2R 21368705 21368732 8 622 4.0 1.0 2.5 2.3 649 chr2R 21368083 intron cv-2 - chr2R 21368408 intron cv-2 - chr2R 21368732 intron cv-2 - chr2R_8_21365001 chr2R_21365001 RAL-217 391 chr2R 21505767 21505792 chr2R 21505848 21505873 4 81 2.0 1.5 1.8 1.4 106 chr2R 21505767 intron MESK2 + chr2R 21505820 intron MESK2 + chr2R 21505873 intron MESK2 + chr2R_4_21505001 chr2R_21505001 RAL-217 392 chr2R 21753087 21753113 chr2R 21753572 21753598 roo 6 483 1.5 1.0 1.2 2.7 511 chr2R 21753087 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-217 393 chr2R 21759566 21759589 chr2R 21759653 21759676 6 86 1.0 1.0 1.0 3.0 110 chr2R 21759566 intergenic not near genes chr2R 21759621 intergenic not near genes chr2R 21759676 intergenic not near genes chr2R_6_21755001 chr2R_21755001 RAL-217 394 chr2R 21809531 21809558 chr2R 21817771 21817798 roo 5 8238 1.5 3.0 2.2 1.6 8267 chr2R 21809531 intergenic not near genes chr2R 21813664 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-217 395 chr2R 21906276 21906292 chr2R 21906377 21906393 5 101 2.0 3.5 2.8 1.3 117 chr2R 21906276 intron Fili + chr2R 21906334 intron Fili + chr2R 21906393 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-217 396 chr2R 21919871 21919897 chr2R 21919959 21919985 5 88 3.5 1.0 2.2 1.6 114 chr2R 21919871 intron Fili + chr2R 21919928 intron Fili + chr2R 21919985 intron Fili + chr2R_5_21915001 chr2R_21915001 RAL-217 397 chr2R 21932246 21932278 chr2R 21932324 21932356 13 76 3.0 1.5 2.2 4.1 110 chr2R 21932246 intron Fili + chr2R 21932301 intron Fili + chr2R 21932356 intron Fili + chr2R_13_21930001 chr2R_21930001 RAL-217 398 chr2R 22017145 22017155 chr2R 22017377 22017387 6 232 2.5 1.5 2.0 2.0 242 chr2R 22017145 intron CG34370 - chr2R 22017266 intron CG34370 - chr2R 22017387 intron CG34370 - chr2R_6_22015001 chr2R_22015001 RAL-217 399 chr2R 22018049 22018053 chr2R 22018300 22018304 4 251 0.5 1.5 1.0 2.0 255 chr2R 22018049 intron CG34370 - chr2R 22018176 intron CG34370 - chr2R 22018304 intron CG34370 - chr2R_4_22015001 chr2R_22015001 RAL-217 400 chr2R 22035546 22035562 chr2R 22035633 22035648 8 87 6.5 10.5 8.5 0.8 102 chr2R 22035546 intron,3` UTR CG34370 -,CG9308 + chr2R 22035597 intron,3` UTR CG34370 -,CG9308 + chr2R 22035648 intron,3` UTR CG34370 -,CG9308 + chr2R_8_22035001 chr2R_22035001 RAL-217 401 chr2R 22072692 22072712 chr2R 22072776 22072797 6 85 2.0 3.5 2.8 1.6 105 chr2R 22072692 intron CG11474 - chr2R 22072744 intron CG11474 - chr2R 22072797 exon CG11474 - chr2R_6_22070001 chr2R_22070001 RAL-217 402 chr2R 22185674 22185688 chr2R 22185772 22185787 5 99 3.0 0.0 1.5 2.0 113 chr2R 22185674 3` UTR MED16 + chr2R 22185730 3` UTR MED16 + chr2R 22185787 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-217 403 chr2R 22291157 22291179 chr2R 22291239 22291261 5 82 1.5 1.0 1.2 2.3 104 chr2R 22291157 intergenic not near genes chr2R 22291209 intergenic not near genes chr2R 22291261 intergenic CR43422 + chr2R_5_22290001 chr2R_22290001 RAL-217 404 chr2R 22312776 22312802 chr2R 22312902 22312928 13 126 1.5 2.5 2.0 4.3 152 chr2R 22312776 intergenic CR44758 + chr2R 22312852 intergenic CR44758 + chr2R 22312928 5` UTR CR44758 + chr2R_13_22310001 chr2R_22310001 RAL-217 405 chr2R 22525760 22525786 chr2R 22529319 22529343 jockey 6 3558 0.5 3.0 1.8 2.1 3583 chr2R 22525760 intron px - chr2R 22527552 intron px - chr2R 22529343 intron px - chr2R_6_22525001 chr2R_22525001 RAL-217 406 chr2R 22873634 22873638 chr2R 22873710 22873714 4 76 6.0 0.0 3.0 1.0 80 chr2R 22873634 exon CG13532 + chr2R 22873674 intron CG13532 + chr2R 22873714 intron CG13532 + chr2R_4_22870001 chr2R_22870001 RAL-217 407 chr2R 22907403 22907436 chr2R 22907496 22907529 10 90 4.0 4.5 4.2 1.9 126 chr2R 22907403 intron nahoda + chr2R 22907466 intron nahoda + chr2R 22907529 intron nahoda + chr2R_10_22905001 chr2R_22905001 RAL-217 408 chr2R 22925351 22925378 chr2R 22925447 22925473 5 94 1.0 2.0 1.5 2.0 122 chr2R 22925351 5` UTR CG42678 + chr2R 22925412 5` UTR CG42678 + chr2R 22925473 5` UTR CG42678 + chr2R_5_22925001 chr2R_22925001 RAL-217 409 chr2R 22945059 22945084 chr2R 22945172 22945198 5 114 1.0 1.0 1.0 2.5 139 chr2R 22945059 exon CG42694 + chr2R 22945128 3` UTR CG42694 + chr2R 22945198 intergenic CG42694 + chr2R_5_22945001 chr2R_22945001 RAL-217 410 chr2R 22968142 22968167 chr2R 22968231 22968254 6 88 1.0 1.0 1.0 3.0 112 chr2R 22968142 intergenic not near genes chr2R 22968198 intergenic not near genes chr2R 22968254 intergenic not near genes chr2R_6_22965001 chr2R_22965001 RAL-217 411 chr2R 22991639 22991658 chr2R 22991729 22991750 4 90 1.0 2.5 1.8 1.4 111 chr2R 22991639 intron twi + chr2R 22991694 intron twi + chr2R 22991750 intron twi + chr2R_4_22990001 chr2R_22990001 RAL-217 412 chr2R 23052650 23052668 chr2R 23052726 23052744 5 76 1.5 1.0 1.2 2.3 94 chr2R 23052650 intergenic not near genes chr2R 23052697 intergenic not near genes chr2R 23052744 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-217 413 chr2R 23061759 23061766 chr2R 23061835 23061842 4 76 0.0 1.0 0.5 2.7 83 chr2R 23061759 3` UTR l(2)06496 - chr2R 23061800 3` UTR l(2)06496 - chr2R 23061842 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-217 414 chr2R 23061769 23061788 chr2R 23061833 23061864 4 72 0.0 1.0 0.5 2.7 95 chr2R 23061769 3` UTR l(2)06496 - chr2R 23061816 3` UTR l(2)06496 - chr2R 23061864 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-217 415 chr2R 23175038 23175067 chr2R 23175115 23175144 7 77 3.0 2.5 2.8 1.8 106 chr2R 23175038 intron CG34371 - chr2R 23175091 intron CG34371 - chr2R 23175144 intron CG34371 - chr2R_7_23175001 chr2R_23175001 RAL-217 416 chr2R 23257506 23257727 chr2R 23257589 23257811 14 83 3.5 1.0 2.2 4.4 305 chr2R 23257506 intergenic not near genes chr2R 23257658 intergenic not near genes chr2R 23257811 intergenic not near genes chr2R_14_23255001 chr2R_23255001 RAL-217 417 chr2R 23429210 23429239 chr2R 23429433 23429463 10 224 2.0 3.0 2.5 2.9 253 chr2R 23429210 intron CG9815 - chr2R 23429336 intron CG9815 - chr2R 23429463 intron CG9815 - chr2R_10_23425001 chr2R_23425001 RAL-217 418 chr2R 23433026 23433055 chr2R 23433104 23433132 6 78 2.0 2.5 2.2 1.9 106 chr2R 23433026 intron CG9815 - chr2R 23433079 intron CG9815 - chr2R 23433132 intron CG9815 - chr2R_6_23430001 chr2R_23430001 RAL-217 419 chr2R 23522416 23522441 chr2R 23522494 23522520 11 77 3.0 2.0 2.5 3.1 104 chr2R 23522416 intron RabX1 - chr2R 23522468 intron RabX1 - chr2R 23522520 intron RabX1 - chr2R_11_23520001 chr2R_23520001 RAL-217 420 chr2R 23529584 23529598 chr2R 23537155 23537174 412 5 7573 6.5 4.5 5.5 0.8 7590 chr2R 23529584 intron bw - chr2R 23533379 intron bw - chr2R 23537174 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-217 421 chr2R 23529601 23529606 chr2R 23537152 23537182 412 5 7568 4.5 4.5 4.5 0.9 7581 chr2R 23529601 exon bw - chr2R 23533392 intron bw - chr2R 23537182 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-217 422 chr2R 23607037 23607060 chr2R 23607118 23607141 6 81 2.0 4.0 3.0 1.5 104 chr2R 23607037 intron CG17664 - chr2R 23607089 intron CG17664 - chr2R 23607141 intron CG17664 - chr2R_6_23605001 chr2R_23605001 RAL-217 423 chr2R 23653970 23654001 chr2R 23654047 23654077 6 76 5.0 1.5 3.2 1.4 107 chr2R 23653970 3` UTR retn + chr2R 23654024 3` UTR retn + chr2R 23654077 3` UTR retn + chr2R_6_23650001 chr2R_23650001 RAL-217 424 chr2R 23745406 23745430 chr2R 23745482 23745506 6 76 1.0 2.0 1.5 2.4 100 chr2R 23745406 intron egl - chr2R 23745456 intron egl - chr2R 23745506 intron egl - chr2R_6_23745001 chr2R_23745001 RAL-217 425 chr2R 23758330 23758350 chr2R 23758406 23758426 10 75 3.0 3.5 3.2 2.4 96 chr2R 23758330 intron CG9850 - chr2R 23758378 intron CG9850 - chr2R 23758426 intron CG9850 - chr2R_10_23755001 chr2R_23755001 RAL-217 426 chr2R 23784470 23784501 chr2R 23784548 23784562 6 75 1.0 1.0 1.0 3.0 92 chr2R 23784470 intron CG9850 - chr2R 23784516 intron CG9850 - chr2R 23784562 intron CG9850 - chr2R_6_23780001 chr2R_23780001 RAL-217 427 chr2R 23914299 23914331 chr2R 23921923 23921929 412 8 7618 2.0 2.0 2.0 2.7 7630 chr2R 23914299 exon kcc + chr2R 23918114 intron kcc + chr2R 23921929 intron kcc + chr2R_8_23915001 chr2R_23915001 RAL-217 428 chr2R 24031381 24031405 chr2R 24031465 24031489 6 84 1.0 1.0 1.0 3.0 108 chr2R 24031381 5` UTR CG30172 - chr2R 24031435 intergenic CG30172 -,Chi - chr2R 24031489 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-217 429 chr2R 24147066 24147096 chr2R 24154644 24154674 412 8 7578 5.5 4.5 5.0 1.3 7608 chr2R 24147066 intron Dat + chr2R 24150870 intron Dat + chr2R 24154674 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-217 430 chr2R 24177236 24177268 chr2R 24184721 24184751 412 6 7485 0.5 1.5 1.0 3.0 7515 chr2R 24177236 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184751 3` UTR Nop60B + chr2R_6_24180001 chr2R_24180001 RAL-217 431 chr2R 24243745 24243774 chr2R 24243847 24243876 5 102 0.5 0.0 0.2 4.2 131 chr2R 24243745 intron nord + chr2R 24243810 intron nord + chr2R 24243876 intron nord + chr2R_5_24240001 chr2R_24240001 RAL-217 432 chr2R 24351412 24351439 chr2R 24351493 24351520 5 81 2.0 1.0 1.5 2.0 108 chr2R 24351412 intron bs + chr2R 24351466 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_5_24350001 chr2R_24350001 RAL-217 433 chr2R 24353427 24353455 chr2R 24361789 24361817 roo 6 8362 1.0 2.5 1.8 2.1 8390 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361817 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-217 434 chr2R 24422704 24422733 chr2R 24422903 24422933 5 198 4.0 5.0 4.5 0.9 229 chr2R 24422704 intron prom - chr2R 24422818 intron prom - chr2R 24422933 exon prom - chr2R_5_24420001 chr2R_24420001 RAL-217 435 chr2R 24483638 24483670 chr2R 24483718 24483742 16 78 3.5 1.0 2.2 5.0 104 chr2R 24483638 intron CG13579 + chr2R 24483690 intron CG13579 + chr2R 24483742 intron CG13579 + chr2R_16_24480001 chr2R_24480001 RAL-217 436 chr2R 24490883 24490915 chr2R 24492643 24492661 8 1751 23.0 21.5 22.2 0.3 1778 chr2R 24490883 intergenic CG13579 + chr2R 24491772 intergenic CG13589 - chr2R 24492661 exon CG13589 - chr2R_8_24490001 chr2R_24490001 RAL-217 437 chr2R 24647591 24647617 chr2R 24655148 24655173 412 5 7556 2.0 2.5 2.2 1.6 7582 chr2R 24647591 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655173 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-217 438 chr2R 24719798 24719825 chr2R 24719906 24719937 14 110 4.5 3.0 3.8 2.9 139 chr2R 24719798 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719937 intron Mid1 - chr2R_14_24715001 chr2R_24715001 RAL-217 439 chr2R 24721251 24721275 chr2R 24721402 24721426 11 150 2.5 4.0 3.2 2.6 175 chr2R 24721251 intron Mid1 - chr2R 24721338 intron Mid1 - chr2R 24721426 intron Mid1 - chr2R_11_24720001 chr2R_24720001 RAL-217 440 chr2R 24727885 24727915 chr2R 24735393 24735419 mdg1 13 7507 4.5 1.5 3.0 3.2 7534 chr2R 24727885 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735419 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-217 441 chr2R 24763614 24763637 chr2R 24765590 24765612 G2 4 1973 7.0 5.0 6.0 0.6 1998 chr2R 24763614 exon CG3894 + chr2R 24764613 intron CG3894 + chr2R 24765612 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-217 442 chr2R 24848666 24848688 chr2R 24848750 24848772 6 84 1.0 3.0 2.0 2.0 106 chr2R 24848666 intergenic CG3650 + chr2R 24848719 intergenic CG3650 + chr2R 24848772 intergenic CG3650 + chr2R_6_24845001 chr2R_24845001 RAL-217 443 chr2R 25061339 25061367 chr2R 25061422 25061450 8 80 2.5 4.5 3.5 1.8 111 chr2R 25061339 intergenic not near genes chr2R 25061394 intergenic not near genes chr2R 25061450 intergenic not near genes chr2R_8_25060001 chr2R_25060001 RAL-217 444 chr2R 25101281 25101308 chr2R 25101383 25101410 5 101 1.5 1.5 1.5 2.0 129 chr2R 25101281 intron lov - chr2R 25101346 intron lov - chr2R 25101410 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-217 445 chr2R 25131012 25131045 chr2R 25131089 25131121 4 77 0.5 1.5 1.0 2.0 109 chr2R 25131012 intron lov - chr2R 25131066 intron lov - chr2R 25131121 intron lov - chr2R_4_25130001 chr2R_25130001 RAL-217 446 chr3L 160227 160263 chr3L 160329 160365 14 101 4.5 4.0 4.2 2.7 138 chr3L 160227 intron p130CAS + chr3L 160296 intron p130CAS + chr3L 160365 intron p130CAS + chr3L_14_160001 chr3L_160001 RAL-217 447 chr3L 338816 338838 chr3L 338910 338930 5 94 2.0 2.5 2.2 1.6 114 chr3L 338816 intron,intron Ptpmeg +,mthl10 - chr3L 338873 intron,intron Ptpmeg +,mthl10 - chr3L 338930 intron,intron Ptpmeg +,mthl10 - chr3L_5_335001 chr3L_335001 RAL-217 448 chr3L 402691 402711 chr3L 409743 409764 297 6 7053 5.5 3.0 4.2 1.2 7073 chr3L 402691 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409764 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-217 449 chr3L 559623 559632 chr3L 560011 560020 4 388 1.0 1.5 1.2 1.8 397 chr3L 559623 intron hipk + chr3L 559822 intron hipk + chr3L 560020 intron hipk + chr3L_4_555001 chr3L_555001 RAL-217 450 chr3L 690776 690782 chr3L 690863 690869 6 87 0.0 6.0 3.0 1.5 93 chr3L 690776 exon RabX6 + chr3L 690822 intron RabX6 + chr3L 690869 intron RabX6 + chr3L_6_690001 chr3L_690001 RAL-217 451 chr3L 746498 746521 chr3L 746582 746606 8 84 2.0 2.5 2.2 2.5 108 chr3L 746498 intron hng3 - chr3L 746552 intron hng3 - chr3L 746606 intron hng3 - chr3L_8_745001 chr3L_745001 RAL-217 452 chr3L 858012 858018 chr3L 866489 866499 Tirant 4 8479 3.5 5.5 4.5 0.7 8487 chr3L 858012 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866499 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-217 453 chr3L 858019 858030 chr3L 866482 866511 Tirant 4 8472 3.0 5.5 4.2 0.8 8492 chr3L 858019 intergenic not near genes chr3L 862265 intergenic not near genes chr3L 866511 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-217 454 chr3L 905074 905093 chr3L 905158 905174 4 83 0.0 0.5 0.2 3.3 100 chr3L 905074 intergenic not near genes chr3L 905124 intergenic not near genes chr3L 905174 intergenic not near genes chr3L_4_905001 chr3L_905001 RAL-217 455 chr3L 925177 925188 chr3L 932603 932614 mdg1 6 7426 4.5 1.0 2.8 1.6 7437 chr3L 925177 intron Glut1 + chr3L 928896 intron Glut1 + chr3L 932614 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-217 456 chr3L 933912 933939 chr3L 934014 934042 4 102 1.5 2.0 1.8 1.4 130 chr3L 933912 intron Glut1 + chr3L 933977 intron Glut1 + chr3L 934042 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-217 457 chr3L 939773 939801 chr3L 940894 940922 jockey 10 1121 3.0 5.0 4.0 2.0 1149 chr3L 939773 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-217 458 chr3L 1010998 1011023 chr3L 1011078 1011097 6 79 2.0 1.0 1.5 2.4 99 chr3L 1010998 intron trio - chr3L 1011048 intron trio - chr3L 1011097 intron trio - chr3L_6_1010001 chr3L_1010001 RAL-217 459 chr3L 1040555 1040578 chr3L 1040638 1040662 5 84 1.0 0.5 0.8 2.8 107 chr3L 1040555 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040662 intron bab1 - chr3L_5_1040001 chr3L_1040001 RAL-217 460 chr3L 1103995 1104013 chr3L 1104186 1104204 6 191 2.0 2.0 2.0 2.0 209 chr3L 1103995 intergenic not near genes chr3L 1104100 intergenic not near genes chr3L 1104204 intergenic not near genes chr3L_6_1100001 chr3L_1100001 RAL-217 461 chr3L 1154132 1154155 chr3L 1163282 1163303 roo 6 9150 1.5 2.5 2.0 2.0 9171 chr3L 1154132 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163303 intron bab2 - chr3L_6_1155001 chr3L_1155001 RAL-217 462 chr3L 1219596 1219624 chr3L 1227329 1227357 412 10 7732 4.0 3.0 3.5 2.2 7761 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-217 463 chr3L 1288216 1288238 chr3L 1288904 1288926 8 687 7.0 4.0 5.5 1.2 710 chr3L 1288216 exon CG32333 + chr3L 1288571 intron CG32333 + chr3L 1288926 intron CG32333 + chr3L_8_1285001 chr3L_1285001 RAL-217 464 chr3L 1396745 1396758 chr3L 1396829 1396841 4 84 3.5 2.0 2.8 1.1 96 chr3L 1396745 intron Ptp61F - chr3L 1396793 intron Ptp61F - chr3L 1396841 intron Ptp61F - chr3L_4_1395001 chr3L_1395001 RAL-217 465 chr3L 1454241 1454270 chr3L 1454311 1454347 7 73 2.0 3.0 2.5 2.0 106 chr3L 1454241 intron Ptp61F - chr3L 1454294 intron Ptp61F - chr3L 1454347 intron Ptp61F - chr3L_7_1450001 chr3L_1450001 RAL-217 466 chr3L 1501996 1502020 chr3L 1502076 1502094 8 79 3.0 2.5 2.8 2.1 98 chr3L 1501996 intron pUf68 - chr3L 1502045 intron pUf68 - chr3L 1502094 intron pUf68 - chr3L_8_1500001 chr3L_1500001 RAL-217 467 chr3L 1505995 1506024 chr3L 1513592 1513621 17.6 7 7597 4.5 3.0 3.8 1.5 7626 chr3L 1505995 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513621 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-217 468 chr3L 2168776 2168799 chr3L 2168867 2168890 8 91 1.5 0.5 1.0 4.0 114 chr3L 2168776 exon CG15879 - chr3L 2168833 intron CG15879 - chr3L 2168890 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-217 469 chr3L 2293394 2293425 chr3L 2293474 2293486 13 77 2.0 6.0 4.0 2.6 92 chr3L 2293394 intron MsR2 + chr3L 2293440 intron MsR2 + chr3L 2293486 intron MsR2 + chr3L_13_2290001 chr3L_2290001 RAL-217 470 chr3L 2308003 2308034 chr3L 2308108 2308140 5 106 1.0 3.0 2.0 1.7 137 chr3L 2308003 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308140 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-217 471 chr3L 2314444 2314462 chr3L 2314522 2314540 4 78 2.0 2.5 2.2 1.2 96 chr3L 2314444 intergenic not near genes chr3L 2314492 intergenic not near genes chr3L 2314540 intergenic not near genes chr3L_4_2310001 chr3L_2310001 RAL-217 472 chr3L 2315034 2315068 chr3L 2315185 2315219 9 150 1.0 2.5 1.8 3.2 185 chr3L 2315034 intergenic not near genes chr3L 2315126 intergenic not near genes chr3L 2315219 intergenic not near genes chr3L_9_2315001 chr3L_2315001 RAL-217 473 chr3L 2347078 2347102 chr3L 2347167 2347191 10 88 1.0 2.5 1.8 3.6 113 chr3L 2347078 intergenic not near genes chr3L 2347134 intergenic not near genes chr3L 2347191 intergenic not near genes chr3L_10_2345001 chr3L_2345001 RAL-217 474 chr3L 2366089 2366110 chr3L 2366174 2366195 4 85 2.0 1.0 1.5 1.6 106 chr3L 2366089 intergenic not near genes chr3L 2366142 intergenic not near genes chr3L 2366195 intergenic not near genes chr3L_4_2365001 chr3L_2365001 RAL-217 475 chr3L 2447517 2447536 chr3L 2456659 2456690 roo 5 9150 3.0 2.5 2.8 1.3 9173 chr3L 2447517 intron CG45186 + chr3L 2452104 intron CG45186 + chr3L 2456690 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-217 476 chr3L 2533648 2533682 chr3L 2533729 2533764 8 79 3.5 3.0 3.2 1.9 116 chr3L 2533648 intron Spn - chr3L 2533706 intron Spn - chr3L 2533764 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-217 477 chr3L 2701305 2701319 chr3L 2701387 2701396 8 84 6.5 3.0 4.8 1.4 91 chr3L 2701305 intron Fife - chr3L 2701350 intron Fife - chr3L 2701396 intron Fife - chr3L_8_2700001 chr3L_2700001 RAL-217 478 chr3L 2701321 2701338 chr3L 2701386 2701423 9 79 3.5 3.0 3.2 2.1 102 chr3L 2701321 intron Fife - chr3L 2701372 intron Fife - chr3L 2701423 intron Fife - chr3L_9_2700001 chr3L_2700001 RAL-217 479 chr3L 2812355 2812366 chr3L 2812437 2812448 4 82 3.0 2.5 2.8 1.1 93 chr3L 2812355 intron CG43444 - chr3L 2812402 intron CG43444 - chr3L 2812448 intron CG43444 - chr3L_4_2810001 chr3L_2810001 RAL-217 480 chr3L 2876676 2876693 chr3L 2876776 2876777 4 96 1.5 2.5 2.0 1.3 101 chr3L 2876676 intron CG43444 - chr3L 2876726 intron CG43444 - chr3L 2876777 intron CG43444 - chr3L_4_2875001 chr3L_2875001 RAL-217 481 chr3L 2906067 2906090 chr3L 2906154 2906177 14 84 1.5 3.0 2.2 4.4 110 chr3L 2906067 intron Shab + chr3L 2906122 intron Shab + chr3L 2906177 intron Shab + chr3L_14_2905001 chr3L_2905001 RAL-217 482 chr3L 2927846 2927855 chr3L 2936123 2936132 Tirant 4 8277 3.0 1.0 2.0 1.3 8286 chr3L 2927846 intron Shab + chr3L 2931989 intron Shab + chr3L 2936132 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-217 483 chr3L 3050897 3050927 chr3L 3050984 3051014 7 86 1.5 0.5 1.0 3.5 117 chr3L 3050897 intron CG32485 + chr3L 3050956 intron CG32485 + chr3L 3051014 exon CG32485 + chr3L_7_3050001 chr3L_3050001 RAL-217 484 chr3L 3057252 3057278 chr3L 3057396 3057421 6 144 3.0 3.0 3.0 1.5 169 chr3L 3057252 exon CG32486 - chr3L 3057336 intron CG32486 - chr3L 3057421 intron CG32486 - chr3L_6_3055001 chr3L_3055001 RAL-217 485 chr3L 3102815 3102849 chr3L 3102901 3102935 9 85 2.5 2.0 2.2 2.8 120 chr3L 3102815 intron Cht7 - chr3L 3102875 intron Cht7 - chr3L 3102935 intron Cht7 - chr3L_9_3100001 chr3L_3100001 RAL-217 486 chr3L 3281440 3281476 chr3L 3281936 3281972 Doc 23 495 3.5 7.5 5.5 3.5 532 chr3L 3281440 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281972 intron CG12017 + chr3L_23_3280001 chr3L_3280001 RAL-217 487 chr3L 3475075 3475106 chr3L 3475519 3475550 jockey 11 444 0.5 1.5 1.0 5.5 475 chr3L 3475075 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-217 488 chr3L 3484383 3484402 chr3L 3484559 3484578 5 176 0.0 0.5 0.2 4.2 195 chr3L 3484383 intron,intron CG42324 +,CG43074 - chr3L 3484480 intron,exon CG42324 +,CG43074 - chr3L 3484578 intron,exon CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-217 489 chr3L 3524863 3524897 chr3L 3524945 3524979 11 82 3.5 3.0 3.2 2.6 116 chr3L 3524863 intron Eip63E + chr3L 3524921 intron Eip63E + chr3L 3524979 intron Eip63E + chr3L_11_3520001 chr3L_3520001 RAL-217 490 chr3L 3539045 3539060 chr3L 3539133 3539148 4 87 0.5 0.5 0.5 2.7 103 chr3L 3539045 intron Eip63E + chr3L 3539096 intron Eip63E + chr3L 3539148 intron Eip63E + chr3L_4_3535001 chr3L_3535001 RAL-217 491 chr3L 3601297 3601327 chr3L 3606608 3606638 copia 6 5311 2.5 2.0 2.2 1.9 5341 chr3L 3601297 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606638 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-217 492 chr3L 3936464 3936494 chr3L 3936557 3936587 8 91 1.0 0.5 0.8 4.4 123 chr3L 3936464 3` UTR CG10866 - chr3L 3936526 3` UTR CG10866 - chr3L 3936587 3` UTR CG10866 - chr3L_8_3935001 chr3L_3935001 RAL-217 493 chr3L 4195136 4195171 chr3L 4195240 4195273 9 103 5.5 2.0 3.8 1.9 137 chr3L 4195136 exon CG43367 + chr3L 4195204 intron CG43367 + chr3L 4195273 intron CG43367 + chr3L_9_4195001 chr3L_4195001 RAL-217 494 chr3L 4576393 4576422 chr3L 4576596 4576624 5 203 2.0 0.0 1.0 2.5 231 chr3L 4576393 intron CG42540 + chr3L 4576508 intron CG42540 + chr3L 4576624 intron CG42540 + chr3L_5_4575001 chr3L_4575001 RAL-217 495 chr3L 4901131 4901147 chr3L 4907320 4907337 diver 4 6190 1.0 2.0 1.5 1.6 6206 chr3L 4901131 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907337 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-217 496 chr3L 4907976 4907989 chr3L 4908052 4908065 4 76 0.5 0.5 0.5 2.7 89 chr3L 4907976 intergenic not near genes chr3L 4908020 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-217 497 chr3L 4990746 4990772 chr3L 4990860 4990885 8 113 3.0 4.0 3.5 1.8 139 chr3L 4990746 intron Con - chr3L 4990816 intron Con - chr3L 4990885 intron Con - chr3L_8_4990001 chr3L_4990001 RAL-217 498 chr3L 5034156 5034176 chr3L 5043308 5043327 roo 6 9152 1.0 0.0 0.5 4.0 9171 chr3L 5034156 intron Con - chr3L 5038742 intron Con - chr3L 5043327 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-217 499 chr3L 5104482 5104510 chr3L 5124616 5124644 5 20133 0.5 2.0 1.2 2.3 20162 chr3L 5104482 intergenic not near genes chr3L 5114563 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-217 500 chr3L 5354108 5354137 chr3L 5354202 5354231 5 94 0.0 0.0 0.0 5.0 123 chr3L 5354108 intron lama - chr3L 5354170 intron lama - chr3L 5354231 intron lama - chr3L_5_5350001 chr3L_5350001 RAL-217 501 chr3L 5388218 5388232 chr3L 5388542 5388556 4 324 2.5 5.0 3.8 0.8 338 chr3L 5388218 intergenic not near genes chr3L 5388387 intergenic not near genes chr3L 5388556 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-217 502 chr3L 5482939 5482975 chr3L 5483262 5483266 4 315 1.0 20.5 10.8 0.3 327 chr3L 5482939 exon CG4835 + chr3L 5483102 exon CG4835 + chr3L 5483266 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-217 503 chr3L 5505725 5505742 chr3L 5506089 5506106 5 364 2.0 3.5 2.8 1.3 381 chr3L 5505725 intron CG34342 - chr3L 5505916 intron CG34342 - chr3L 5506106 exon CG34342 - chr3L_5_5505001 chr3L_5505001 RAL-217 504 chr3L 5910033 5910061 chr3L 5910274 5910302 pogo 5 241 1.0 1.0 1.0 2.5 269 chr3L 5910033 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-217 505 chr3L 5926320 5926347 chr3L 5926509 5926537 BS 7 189 1.5 6.0 3.8 1.5 217 chr3L 5926320 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926537 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-217 506 chr3L 6052652 6052667 chr3L 6052737 6052752 4 84 9.5 7.5 8.5 0.4 100 chr3L 6052652 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-217 507 chr3L 6220925 6220947 chr3L 6230077 6230099 roo 6 9152 3.0 3.0 3.0 1.5 9174 chr3L 6220925 5` UTR pncr008:3L + chr3L 6225512 intergenic not near genes chr3L 6230099 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-217 508 chr3L 6335009 6335037 chr3L 6335480 6335508 297 7 471 2.0 1.5 1.8 2.5 499 chr3L 6335009 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335508 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-217 509 chr3L 7079623 7079653 chr3L 7080043 7080073 15 419 3.0 2.0 2.5 4.3 450 chr3L 7079623 intergenic not near genes chr3L 7079848 intergenic not near genes chr3L 7080073 intergenic not near genes chr3L_15_7075001 chr3L_7075001 RAL-217 510 chr3L 7314999 7315033 chr3L 7316143 7316177 12 1142 5.5 2.5 4.0 2.4 1178 chr3L 7314999 intergenic not near genes chr3L 7315588 intergenic not near genes chr3L 7316177 intergenic not near genes chr3L_12_7315001 chr3L_7315001 RAL-217 511 chr3L 7377325 7377344 chr3L 7380430 7380443 297 5 3104 0.5 2.5 1.5 2.0 3118 chr3L 7377325 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380443 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-217 512 chr3L 7474968 7474991 chr3L 7475043 7475068 7 77 3.5 1.5 2.5 2.0 100 chr3L 7474968 intergenic not near genes chr3L 7475018 intergenic not near genes chr3L 7475068 intergenic not near genes chr3L_7_7475001 chr3L_7475001 RAL-217 513 chr3L 7576217 7576237 chr3L 7576305 7576325 6 87 3.5 4.5 4.0 1.2 108 chr3L 7576217 intergenic not near genes chr3L 7576271 intergenic not near genes chr3L 7576325 intergenic not near genes chr3L_6_7575001 chr3L_7575001 RAL-217 514 chr3L 7591151 7591179 chr3L 7591235 7591270 5 87 1.5 2.0 1.8 1.8 119 chr3L 7591151 intergenic CG7716 - chr3L 7591210 intergenic CG7716 - chr3L 7591270 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-217 515 chr3L 7591898 7591926 chr3L 7591975 7592003 9 76 0.5 4.0 2.2 2.8 105 chr3L 7591898 intergenic not near genes chr3L 7591950 intergenic not near genes chr3L 7592003 intergenic not near genes chr3L_9_7590001 chr3L_7590001 RAL-217 516 chr3L 7749470 7749471 chr3L 11777678 11777678 8 4028208 5.0 7.5 6.2 1.1 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_9760001 chr3L_9760001 RAL-217 517 chr3L 7792052 7792075 chr3L 7792136 7792159 9 84 2.0 1.0 1.5 3.6 107 chr3L 7792052 intron CG32369 - chr3L 7792106 intron CG32369 - chr3L 7792159 intron CG32369 - chr3L_9_7790001 chr3L_7790001 RAL-217 518 chr3L 7793715 7793737 chr3L 7800767 7800789 297 4 7052 0.5 2.0 1.2 1.8 7074 chr3L 7793715 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800789 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-217 519 chr3L 7886512 7886538 chr3L 7889030 7889055 Stalker4 5 2517 1.5 2.5 2.0 1.7 2543 chr3L 7886512 intron CG32365 + chr3L 7887784 intron CG32365 + chr3L 7889055 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-217 520 chr3L 7985366 7985395 chr3L 7987694 7987723 NOF 4 2328 2.0 2.0 2.0 1.3 2357 chr3L 7985366 intron nmo + chr3L 7986544 intron nmo + chr3L 7987723 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-217 521 chr3L 8302004 8302039 chr3L 8304301 8304336 17 2299 29.5 30.0 29.8 0.6 2332 chr3L 8302004 exon CG13671 + chr3L 8303170 exon CG7194 - chr3L 8304336 exon Sbp2 + chr3L_17_8300001 chr3L_8300001 RAL-217 522 chr3L 8456473 8456488 chr3L 8456568 8456579 5 94 5.0 5.0 5.0 0.8 106 chr3L 8456473 intron Gug + chr3L 8456526 intron Gug + chr3L 8456579 intron Gug + chr3L_5_8455001 chr3L_8455001 RAL-217 523 chr3L 8481797 8481801 chr3L 8490933 8490960 roo 5 9146 6.5 3.5 5.0 0.8 9163 chr3L 8481797 intron CG43163 - chr3L 8486378 intron CG43163 - chr3L 8490960 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-217 524 chr3L 8498302 8498328 chr3L 8505769 8505795 blood 5 7467 0.0 2.5 1.2 2.3 7493 chr3L 8498302 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-217 525 chr3L 8591253 8591283 chr3L 8591387 8591420 11 134 3.5 3.5 3.5 2.4 167 chr3L 8591253 intron CG43078 + chr3L 8591336 intron CG43078 + chr3L 8591420 intron CG43078 + chr3L_11_8590001 chr3L_8590001 RAL-217 526 chr3L 8791274 8791282 chr3L 8796702 8796710 I-element 5 5428 5.5 0.0 2.8 1.3 5436 chr3L 8791274 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796710 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-217 527 chr3L 8812190 8812224 chr3L 8815257 8815291 15 3065 4.0 7.0 5.5 2.3 3101 chr3L 8812190 intergenic not near genes chr3L 8813740 intergenic not near genes chr3L 8815291 intergenic not near genes chr3L_15_8810001 chr3L_8810001 RAL-217 528 chr3L 8827121 8827129 chr3L 8827331 8827339 4 210 0.0 5.5 2.8 1.1 218 chr3L 8827121 intergenic dally + chr3L 8827230 intergenic dally + chr3L 8827339 intergenic dally + chr3L_4_8825001 chr3L_8825001 RAL-217 529 chr3L 8827543 8827573 chr3L 8827617 8827648 8 74 3.0 2.0 2.5 2.3 105 chr3L 8827543 5` UTR dally + chr3L 8827596 5` UTR dally + chr3L 8827648 5` UTR dally + chr3L_8_8825001 chr3L_8825001 RAL-217 530 chr3L 8884409 8884420 chr3L 8884607 8884619 6 199 1.0 0.0 0.5 4.0 210 chr3L 8884409 intron dally + chr3L 8884514 intron dally + chr3L 8884619 intron dally + chr3L_6_8880001 chr3L_8880001 RAL-217 531 chr3L 8889935 8889953 chr3L 8890019 8890037 4 84 0.5 1.5 1.0 2.0 102 chr3L 8889935 3` UTR dally + chr3L 8889986 3` UTR dally + chr3L 8890037 3` UTR dally + chr3L_4_8885001 chr3L_8885001 RAL-217 532 chr3L 8955067 8955097 chr3L 8955154 8955174 10 86 8.0 3.0 5.5 1.5 107 chr3L 8955067 exon GNBP3 + chr3L 8955120 exon GNBP3 + chr3L 8955174 exon GNBP3 + chr3L_10_8955001 chr3L_8955001 RAL-217 533 chr3L 9003944 9003977 chr3L 9004029 9004062 8 84 2.5 1.0 1.8 2.9 118 chr3L 9003944 intergenic not near genes chr3L 9004003 intergenic not near genes chr3L 9004062 intergenic not near genes chr3L_8_9000001 chr3L_9000001 RAL-217 534 chr3L 9013691 9013692 chr3L 18417066 18417066 8 9403375 21.5 17.5 19.5 0.4 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-217 535 chr3L 9076932 9076959 chr3L 9084488 9084505 412 6 7557 6.0 3.0 4.5 1.1 7573 chr3L 9076932 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084505 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-217 536 chr3L 9219244 9219272 chr3L 9219914 9219944 jockey 7 672 3.0 4.5 3.8 1.5 700 chr3L 9219244 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219944 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-217 537 chr3L 9270620 9270649 chr3L 9278374 9278398 roo 8 7754 1.5 3.0 2.2 2.5 7778 chr3L 9270620 intron GluRIB + chr3L 9274509 intron GluRIB + chr3L 9278398 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-217 538 chr3L 9419911 9419926 chr3L 9419989 9419993 5 76 4.5 4.5 4.5 0.9 82 chr3L 9419911 intron CG3967 - chr3L 9419952 intron CG3967 - chr3L 9419993 intron CG3967 - chr3L_5_9415001 chr3L_9415001 RAL-217 539 chr3L 9575908 9575936 chr3L 9580986 9581013 jockey 9 5077 3.5 2.0 2.8 2.4 5105 chr3L 9575908 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_9_9575001 chr3L_9575001 RAL-217 540 chr3L 9689527 9689541 chr3L 9689607 9689621 5 80 1.0 2.5 1.8 1.8 94 chr3L 9689527 intron CG6767 - chr3L 9689574 intron CG6767 - chr3L 9689621 intron CG6767 - chr3L_5_9685001 chr3L_9685001 RAL-217 541 chr3L 9848522 9848550 chr3L 9848593 9848626 7 75 1.5 0.0 0.8 3.9 104 chr3L 9848522 intron RasGAP1 - chr3L 9848574 intron RasGAP1 - chr3L 9848626 intron RasGAP1 - chr3L_7_9845001 chr3L_9845001 RAL-217 542 chr3L 9871192 9871220 chr3L 9871288 9871316 6 95 2.5 3.0 2.8 1.6 124 chr3L 9871192 intergenic not near genes chr3L 9871254 intergenic not near genes chr3L 9871316 intergenic not near genes chr3L_6_9870001 chr3L_9870001 RAL-217 543 chr3L 9881392 9881407 chr3L 9881857 9881865 5 465 2.5 0.0 1.2 2.3 473 chr3L 9881392 intron CG34382 + chr3L 9881628 intron CG34382 + chr3L 9881865 intron CG34382 + chr3L_5_9880001 chr3L_9880001 RAL-217 544 chr3L 9929671 9929691 chr3L 9938452 9938472 roo 8 8778 2.5 2.0 2.2 2.5 8801 chr3L 9929671 intron CG34356 + chr3L 9934072 intron CG34356 + chr3L 9938472 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-217 545 chr3L 10027955 10027981 chr3L 10028050 10028076 7 95 1.5 4.0 2.8 1.8 121 chr3L 10027955 intron dpr6 + chr3L 10028016 intron dpr6 + chr3L 10028076 intron dpr6 + chr3L_7_10025001 chr3L_10025001 RAL-217 546 chr3L 10035221 10035246 chr3L 10035308 10035333 5 87 1.0 1.5 1.2 2.3 112 chr3L 10035221 intron dpr6 + chr3L 10035277 intron dpr6 + chr3L 10035333 intron dpr6 + chr3L_5_10035001 chr3L_10035001 RAL-217 547 chr3L 10120481 10120516 chr3L 10122151 10122186 11 1670 33.0 21.0 27.0 0.4 1705 chr3L 10120481 intron dpr6 + chr3L 10121334 intron dpr6 + chr3L 10122186 intron dpr6 + chr3L_11_10120001 chr3L_10120001 RAL-217 548 chr3L 10300052 10300060 chr3L 10300144 10300152 4 92 1.5 0.5 1.0 2.0 100 chr3L 10300052 intergenic not near genes chr3L 10300102 intergenic not near genes chr3L 10300152 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-217 549 chr3L 10310357 10310369 chr3L 10310454 10310465 4 97 1.0 2.0 1.5 1.6 108 chr3L 10310357 intergenic not near genes chr3L 10310411 intergenic not near genes chr3L 10310465 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-217 550 chr3L 10414948 10414954 chr3L 10417320 10417326 Doc 4 2372 1.0 1.5 1.2 1.8 2378 chr3L 10414948 intergenic CG12362 + chr3L 10416137 intergenic not near genes chr3L 10417326 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-217 551 chr3L 10502042 10502060 chr3L 10502138 10502156 4 96 4.0 0.5 2.2 1.2 114 chr3L 10502042 intron A2bp1 + chr3L 10502099 intron A2bp1 + chr3L 10502156 intron A2bp1 + chr3L_4_10500001 chr3L_10500001 RAL-217 552 chr3L 10509487 10509513 chr3L 10509616 10509641 7 129 1.0 1.5 1.2 3.2 154 chr3L 10509487 intron A2bp1 + chr3L 10509564 intron A2bp1 + chr3L 10509641 intron A2bp1 + chr3L_7_10505001 chr3L_10505001 RAL-217 553 chr3L 10658103 10658211 chr3L 10658180 10658338 7 120 0.0 0.0 0.0 7.0 235 chr3L 10658103 intron CG32066 - chr3L 10658220 intron CG32066 - chr3L 10658338 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-217 554 chr3L 10694923 10694933 chr3L 10695015 10695025 5 92 0.0 2.0 1.0 2.5 102 chr3L 10694923 intron NijA - chr3L 10694974 intron NijA - chr3L 10695025 exon NijA - chr3L_5_10690001 chr3L_10690001 RAL-217 555 chr3L 10705580 10705597 chr3L 10705658 10705675 6 78 1.5 3.0 2.2 1.9 95 chr3L 10705580 intergenic not near genes chr3L 10705628 intergenic not near genes chr3L 10705675 intergenic not near genes chr3L_6_10705001 chr3L_10705001 RAL-217 556 chr3L 10762831 10762848 chr3L 10762914 10762931 8 81 7.0 1.5 4.2 1.5 100 chr3L 10762831 intergenic not near genes chr3L 10762881 intergenic not near genes chr3L 10762931 intergenic not near genes chr3L_8_10760001 chr3L_10760001 RAL-217 557 chr3L 10882399 10882421 chr3L 10882488 10882513 5 94 4.0 1.0 2.5 1.4 114 chr3L 10882399 intergenic CG6409 -,CG7949 + chr3L 10882456 intergenic CG6409 -,CG7949 + chr3L 10882513 intergenic CG6409 -,CG7949 + chr3L_5_10880001 chr3L_10880001 RAL-217 558 chr3L 10889225 10889261 chr3L 10889305 10889340 8 78 3.0 2.0 2.5 2.3 115 chr3L 10889225 intergenic not near genes chr3L 10889282 intergenic not near genes chr3L 10889340 intergenic not near genes chr3L_8_10885001 chr3L_10885001 RAL-217 559 chr3L 11329689 11329715 chr3L 11332894 11332920 jockey 5 3195 4.5 5.0 4.8 0.9 3231 chr3L 11329689 intergenic not near genes chr3L 11331304 intergenic not near genes chr3L 11332920 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-217 560 chr3L 11380933 11380965 chr3L 11381066 11381095 8 131 1.0 2.0 1.5 3.2 162 chr3L 11380933 intergenic not near genes chr3L 11381014 intergenic not near genes chr3L 11381095 intergenic not near genes chr3L_8_11380001 chr3L_11380001 RAL-217 561 chr3L 11435560 11435586 chr3L 11435729 11435755 6 169 2.0 4.0 3.0 1.5 195 chr3L 11435560 intergenic CG6149 -,CR44548 + chr3L 11435658 5` UTR CR44548 + chr3L 11435755 5` UTR CR44548 + chr3L_6_11435001 chr3L_11435001 RAL-217 562 chr3L 11663753 11663758 chr3L 11663878 11663883 4 125 3.5 0.0 1.8 1.4 130 chr3L 11663753 intron CG32085 - chr3L 11663818 intron CG32085 - chr3L 11663883 intron CG32085 - chr3L_4_11660001 chr3L_11660001 RAL-217 563 chr3L 11744013 11744035 chr3L 11744119 11744143 4 108 6.5 0.0 3.2 1.0 130 chr3L 11744013 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744143 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-217 564 chr3L 802565 802566 chr3L 11777678 11777678 5 10975112 11.5 7.5 9.5 0.5 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_6290001 chr3L_6290001 RAL-217 565 chr3L 11850139 11850165 chr3L 11850234 11850260 4 95 1.0 0.0 0.5 2.7 121 chr3L 11850139 intergenic not near genes chr3L 11850200 intergenic CG44837 - chr3L 11850260 intergenic CG44837 - chr3L_4_11850001 chr3L_11850001 RAL-217 566 chr3L 11864553 11864583 chr3L 11865848 11865878 pogo 6 1295 2.5 2.5 2.5 1.7 1325 chr3L 11864553 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-217 567 chr3L 11871349 11871363 chr3L 11871428 11871442 4 79 1.5 0.0 0.8 2.2 93 chr3L 11871349 intron CG44837 - chr3L 11871396 intron CG44837 - chr3L 11871442 intron CG44837 - chr3L_4_11870001 chr3L_11870001 RAL-217 568 chr3L 12052704 12052738 chr3L 12052793 12052827 4 89 1.0 1.5 1.2 1.8 123 chr3L 12052704 intron rols - chr3L 12052766 intron rols - chr3L 12052827 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-217 569 chr3L 12074427 12074459 chr3L 12074510 12074542 6 81 0.5 1.0 0.8 3.3 115 chr3L 12074427 intron Sema-5c - chr3L 12074484 intron Sema-5c - chr3L 12074542 intron Sema-5c - chr3L_6_12070001 chr3L_12070001 RAL-217 570 chr3L 12075425 12075442 chr3L 12075514 12075531 5 89 2.5 0.0 1.2 2.3 106 chr3L 12075425 intron Sema-5c - chr3L 12075478 intron Sema-5c - chr3L 12075531 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-217 571 chr3L 12219572 12219591 chr3L 12219654 12219674 8 82 7.0 4.0 5.5 1.2 102 chr3L 12219572 intron app - chr3L 12219623 intron app - chr3L 12219674 intron app - chr3L_8_12215001 chr3L_12215001 RAL-217 572 chr3L 12304091 12304118 chr3L 12304167 12304194 6 76 5.0 4.5 4.8 1.0 103 chr3L 12304091 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-217 573 chr3L 12335408 12335412 chr3L 12335464 12335491 4 73 6.5 1.5 4.0 0.8 83 chr3L 12335408 exon CG32105 + chr3L 12335450 3` UTR CG32105 + chr3L 12335491 3` UTR CG32105 + chr3L_4_12335001 chr3L_12335001 RAL-217 574 chr3L 12446271 12446300 chr3L 12446349 12446375 7 76 4.0 4.5 4.2 1.3 104 chr3L 12446271 intergenic not near genes chr3L 12446323 intergenic not near genes chr3L 12446375 intergenic not near genes chr3L_7_12445001 chr3L_12445001 RAL-217 575 chr3L 12801982 12802010 chr3L 12802058 12802086 6 76 1.0 2.0 1.5 2.4 104 chr3L 12801982 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802086 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-217 576 chr3L 12868032 12868052 chr3L 12868118 12868138 4 86 2.0 2.0 2.0 1.3 106 chr3L 12868032 intergenic not near genes chr3L 12868085 intergenic not near genes chr3L 12868138 intergenic not near genes chr3L_4_12865001 chr3L_12865001 RAL-217 577 chr3L 12894805 12894819 chr3L 12894882 12894888 5 76 2.5 5.0 3.8 1.0 83 chr3L 12894805 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894888 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-217 578 chr3L 12938249 12938272 chr3L 12938327 12938352 9 79 3.0 1.5 2.2 2.8 103 chr3L 12938249 intergenic not near genes chr3L 12938300 intergenic not near genes chr3L 12938352 intergenic not near genes chr3L_9_12935001 chr3L_12935001 RAL-217 579 chr3L 12948028 12948048 chr3L 12948106 12948126 6 78 2.0 2.0 2.0 2.0 98 chr3L 12948028 intergenic not near genes chr3L 12948077 intergenic not near genes chr3L 12948126 intergenic not near genes chr3L_6_12945001 chr3L_12945001 RAL-217 580 chr3L 12957786 12957817 chr3L 12962268 12962299 copia 5 4482 1.5 3.5 2.5 1.4 4513 chr3L 12957786 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-217 581 chr3L 12968174 12968207 chr3L 12968259 12968292 11 85 2.0 3.0 2.5 3.1 118 chr3L 12968174 intergenic Or69a - chr3L 12968233 intergenic Or69a - chr3L 12968292 intergenic not near genes chr3L_11_12965001 chr3L_12965001 RAL-217 582 chr3L 12979895 12979925 chr3L 12979980 12980008 6 84 1.5 2.0 1.8 2.1 113 chr3L 12979895 intergenic not near genes chr3L 12979952 intergenic not near genes chr3L 12980008 intergenic not near genes chr3L_6_12975001 chr3L_12975001 RAL-217 583 chr3L 13206248 13206264 chr3L 13206329 13206346 4 82 3.0 4.0 3.5 0.9 98 chr3L 13206248 intergenic not near genes chr3L 13206297 intergenic not near genes chr3L 13206346 intergenic not near genes chr3L_4_13205001 chr3L_13205001 RAL-217 584 chr3L 13525157 13525190 chr3L 13532953 13532986 roo 7 7795 2.0 2.0 2.0 2.3 7829 chr3L 13525157 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-217 585 chr3L 13626690 13626718 chr3L 13626774 13626802 7 83 2.0 2.5 2.2 2.2 112 chr3L 13626690 intron bru-3 - chr3L 13626746 intron bru-3 - chr3L 13626802 intron bru-3 - chr3L_7_13625001 chr3L_13625001 RAL-217 586 chr3L 13629527 13629549 chr3L 13629638 13629660 6 111 1.0 6.5 3.8 1.2 133 chr3L 13629527 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629660 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-217 587 chr3L 13633415 13633444 chr3L 13633769 13633797 12 354 1.0 2.0 1.5 4.8 382 chr3L 13633415 intron bru-3 - chr3L 13633606 intron bru-3 - chr3L 13633797 intron bru-3 - chr3L_12_13630001 chr3L_13630001 RAL-217 588 chr3L 13648891 13648919 chr3L 13648978 13649009 4 89 2.5 2.5 2.5 1.1 118 chr3L 13648891 intron bru-3 - chr3L 13648950 intron bru-3 - chr3L 13649009 intron bru-3 - chr3L_4_13645001 chr3L_13645001 RAL-217 589 chr3L 13824524 13824552 chr3L 13824859 13824887 9 335 3.0 1.5 2.2 2.8 363 chr3L 13824524 intergenic not near genes chr3L 13824706 intergenic not near genes chr3L 13824887 intergenic not near genes chr3L_9_13820001 chr3L_13820001 RAL-217 590 chr3L 13862489 13862505 chr3L 13862680 13862697 5 201 1.5 5.0 3.2 1.2 208 chr3L 13862489 intron CG8745 - chr3L 13862593 intron CG8745 - chr3L 13862697 intron CG8745 - chr3L_5_13860001 chr3L_13860001 RAL-217 591 chr3L 13907592 13907620 chr3L 13907679 13907707 5 85 0.0 2.5 1.2 2.3 115 chr3L 13907592 3` UTR Rgl - chr3L 13907650 3` UTR Rgl - chr3L 13907707 3` UTR Rgl - chr3L_5_13905001 chr3L_13905001 RAL-217 592 chr3L 13957884 13957900 chr3L 13958077 13958093 6 193 2.0 3.5 2.8 1.6 209 chr3L 13957884 intron CG32137 + chr3L 13957988 intron CG32137 + chr3L 13958093 intron CG32137 + chr3L_6_13955001 chr3L_13955001 RAL-217 593 chr3L 14076299 14076321 chr3L 14076370 14076398 5 76 0.0 1.5 0.8 2.8 99 chr3L 14076299 intron btl + chr3L 14076348 intron btl + chr3L 14076398 intron btl + chr3L_5_14075001 chr3L_14075001 RAL-217 594 chr3L 14245576 14245591 chr3L 14245670 14245683 1360 8 94 4.0 3.5 3.8 1.7 107 chr3L 14245576 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_8_14245001 chr3L_14245001 RAL-217 595 chr3L 14295984 14296015 chr3L 14296468 14296501 roo 10 481 2.5 4.0 3.2 2.4 517 chr3L 14295984 intron fz + chr3L 14296242 intron fz + chr3L 14296501 intron fz + chr3L_10_14295001 chr3L_14295001 RAL-217 596 chr3L 14312042 14312055 chr3L 14316838 14316859 X-element 5 4804 3.5 0.5 2.0 1.7 4817 chr3L 14312042 exon fz + chr3L 14314450 intron fz + chr3L 14316859 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-217 597 chr3L 14353821 14353835 chr3L 14354258 14354272 6 437 6.5 0.5 3.5 1.3 451 chr3L 14353821 intron fz + chr3L 14354046 intron fz + chr3L 14354272 intron fz + chr3L_6_14350001 chr3L_14350001 RAL-217 598 chr3L 14375790 14375818 chr3L 14375977 14376004 7 186 1.5 4.5 3.0 1.8 214 chr3L 14375790 intergenic not near genes chr3L 14375897 intergenic not near genes chr3L 14376004 intergenic not near genes chr3L_7_14375001 chr3L_14375001 RAL-217 599 chr3L 14545767 14545792 chr3L 14545843 14545868 7 76 0.0 0.5 0.2 5.8 101 chr3L 14545767 intron CG9238 - chr3L 14545818 intron CG9238 - chr3L 14545868 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-217 600 chr3L 14721185 14721209 chr3L 14723028 14723048 Rt1c 9 1841 2.5 5.5 4.0 1.8 1863 chr3L 14721185 intron ome + chr3L 14722116 intron ome + chr3L 14723048 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-217 601 chr3L 14893660 14893687 chr3L 14893745 14893772 4 85 1.5 3.0 2.2 1.2 112 chr3L 14893660 intergenic CG34245 - chr3L 14893716 intergenic CG34245 - chr3L 14893772 3` UTR CG34245 - chr3L_4_14890001 chr3L_14890001 RAL-217 602 chr3L 14913907 14913927 chr3L 14913984 14914004 5 77 2.5 0.0 1.2 2.3 97 chr3L 14913907 intron DCX-EMAP + chr3L 14913956 intron DCX-EMAP + chr3L 14914004 intron DCX-EMAP + chr3L_5_14910001 chr3L_14910001 RAL-217 603 chr3L 14962288 14962315 chr3L 14962368 14962394 4 80 0.5 0.5 0.5 2.7 106 chr3L 14962288 intergenic not near genes chr3L 14962341 intergenic not near genes chr3L 14962394 intergenic not near genes chr3L_4_14960001 chr3L_14960001 RAL-217 604 chr3L 15085066 15085083 chr3L 15086232 15086249 1360 4 1166 1.0 4.0 2.5 1.1 1183 chr3L 15085066 intron cp309 - chr3L 15085658 intron cp309 - chr3L 15086249 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-217 605 chr3L 15363128 15363161 chr3L 15363204 15363236 12 76 0.5 2.5 1.5 4.8 108 chr3L 15363128 intergenic not near genes chr3L 15363182 intergenic not near genes chr3L 15363236 intergenic not near genes chr3L_12_15360001 chr3L_15360001 RAL-217 606 chr3L 15412640 15412665 chr3L 15412728 15412753 4 88 1.0 1.0 1.0 2.0 113 chr3L 15412640 intergenic not near genes chr3L 15412696 intergenic not near genes chr3L 15412753 intergenic not near genes chr3L_4_15410001 chr3L_15410001 RAL-217 607 chr3L 15633181 15633213 chr3L 15633261 15633293 5 79 0.5 0.0 0.2 4.2 112 chr3L 15633181 intron comm3 - chr3L 15633237 intron comm3 - chr3L 15633293 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-217 608 chr3L 15836240 15836267 chr3L 15836325 15836342 8 84 4.0 1.5 2.8 2.1 102 chr3L 15836240 exon CG15715 - chr3L 15836291 intron CG15715 - chr3L 15836342 intron CG15715 - chr3L_8_15835001 chr3L_15835001 RAL-217 609 chr3L 15883205 15883221 chr3L 15883498 15883506 8 291 0.5 3.5 2.0 2.7 301 chr3L 15883205 intron pHCl - chr3L 15883356 intron pHCl - chr3L 15883506 intron pHCl - chr3L_8_15880001 chr3L_15880001 RAL-217 610 chr3L 15899226 15899241 chr3L 15899792 15899808 jockey 7 566 5.0 6.0 5.5 1.1 582 chr3L 15899226 intergenic pHCl - chr3L 15899517 intergenic pHCl - chr3L 15899808 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-217 611 chr3L 15899250 15899260 chr3L 15899791 15899797 jockey 5 553 2.0 6.0 4.0 1.0 547 chr3L 15899250 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899797 intergenic sff - chr3L_5_15895001 chr3L_15895001 RAL-217 612 chr3L 16149202 16149222 chr3L 16149291 16149311 4 89 0.5 0.0 0.2 3.3 109 chr3L 16149202 intron CG5151 - chr3L 16149256 intron CG5151 - chr3L 16149311 intron CG5151 - chr3L_4_16145001 chr3L_16145001 RAL-217 613 chr3L 16184106 16184137 chr3L 16188925 16188954 X-element 4 4818 0.5 2.0 1.2 1.8 4848 chr3L 16184106 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188954 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-217 614 chr3L 16194337 16194365 chr3L 16194422 16194434 6 80 3.0 5.0 4.0 1.2 97 chr3L 16194337 intergenic not near genes chr3L 16194386 intergenic not near genes chr3L 16194434 intergenic not near genes chr3L_6_16190001 chr3L_16190001 RAL-217 615 chr3L 16322830 16322853 chr3L 16322920 16322943 5 90 2.0 4.0 3.0 1.2 113 chr3L 16322830 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322943 intergenic not near genes chr3L_5_16320001 chr3L_16320001 RAL-217 616 chr3L 16360886 16360916 chr3L 16360963 16360994 13 77 1.5 2.5 2.0 4.3 108 chr3L 16360886 intron CG45057 - chr3L 16360940 intron CG45057 - chr3L 16360994 intron CG45057 - chr3L_13_16360001 chr3L_16360001 RAL-217 617 chr3L 16368240 16368268 chr3L 16368321 16368324 4 74 0.5 1.5 1.0 2.0 84 chr3L 16368240 intergenic CG4842 + chr3L 16368282 intergenic CG4842 + chr3L 16368324 intergenic CG4842 + chr3L_4_16365001 chr3L_16365001 RAL-217 618 chr3L 16458767 16458772 chr3L 16458846 16458851 4 79 3.5 2.5 3.0 1.0 84 chr3L 16458767 intron CG33158 + chr3L 16458809 intron CG33158 + chr3L 16458851 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-217 619 chr3L 16493974 16494011 chr3L 16494491 16494528 jockey 7 517 4.5 1.5 3.0 1.8 554 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494251 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494528 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-217 620 chr3L 16560306 16560323 chr3L 16560391 16560408 4 84 2.5 2.0 2.2 1.2 102 chr3L 16560306 intergenic not near genes chr3L 16560357 intergenic not near genes chr3L 16560408 intergenic not near genes chr3L_4_16560001 chr3L_16560001 RAL-217 621 chr3L 16561111 16561141 chr3L 16561189 16561218 6 78 2.0 3.0 2.5 1.7 107 chr3L 16561111 intergenic not near genes chr3L 16561164 intergenic not near genes chr3L 16561218 intergenic not near genes chr3L_6_16560001 chr3L_16560001 RAL-217 622 chr3L 16642804 16642832 chr3L 16642888 16642915 4 84 1.5 1.0 1.2 1.8 111 chr3L 16642804 intron Abl - chr3L 16642860 intron Abl - chr3L 16642915 intron Abl - chr3L_4_16640001 chr3L_16640001 RAL-217 623 chr3L 16873339 16873356 chr3L 16873444 16873457 4 104 3.0 3.0 3.0 1.0 118 chr3L 16873339 intron Lmpt + chr3L 16873398 intron Lmpt + chr3L 16873457 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-217 624 chr3L 16941401 16941427 chr3L 16941502 16941528 6 101 4.0 0.0 2.0 2.0 127 chr3L 16941401 intron Cpr73D - chr3L 16941464 intron Cpr73D - chr3L 16941528 intron Cpr73D - chr3L_6_16940001 chr3L_16940001 RAL-217 625 chr3L 16945732 16945745 chr3L 16954885 16954885 roo 6 9150 4.5 2.0 3.2 1.4 9153 chr3L 16945732 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954885 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-217 626 chr3L 17148316 17148341 chr3L 17148433 17148459 8 118 14.5 10.0 12.2 0.6 143 chr3L 17148316 intron Rbp6 - chr3L 17148388 intron Rbp6 - chr3L 17148459 intron Rbp6 - chr3L_8_17145001 chr3L_17145001 RAL-217 627 chr3L 17328643 17328647 chr3L 17328766 17328773 4 125 12.0 5.5 8.8 0.4 130 chr3L 17328643 exon Or74a - chr3L 17328708 exon Or74a - chr3L 17328773 exon Or74a - chr3L_4_17325001 chr3L_17325001 RAL-217 628 chr3L 17328650 17328673 chr3L 17328765 17328799 14 125 6.0 4.0 5.0 2.3 149 chr3L 17328650 exon Or74a - chr3L 17328724 exon Or74a - chr3L 17328799 exon Or74a - chr3L_14_17325001 chr3L_17325001 RAL-217 629 chr3L 17495233 17495251 chr3L 17495347 17495366 5 115 2.0 0.5 1.2 2.3 133 chr3L 17495233 intron,exon Oatp74D +,edin + chr3L 17495300 intron,3` UTR Oatp74D +,edin + chr3L 17495366 intron Oatp74D + chr3L_5_17495001 chr3L_17495001 RAL-217 630 chr3L 17498107 17498112 chr3L 17498184 17498189 4 77 2.5 1.5 2.0 1.3 82 chr3L 17498107 intron Oatp74D + chr3L 17498148 intron Oatp74D + chr3L 17498189 intron Oatp74D + chr3L_4_17495001 chr3L_17495001 RAL-217 631 chr3L 17510746 17510761 chr3L 17510830 17510843 4 84 2.0 3.0 2.5 1.1 97 chr3L 17510746 exon Oatp74D + chr3L 17510794 intron Oatp74D + chr3L 17510843 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-217 632 chr3L 17516983 17517011 chr3L 17524541 17524569 412 5 7558 2.0 2.5 2.2 1.6 7586 chr3L 17516983 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524569 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-217 633 chr3L 17790605 17790636 chr3L 17790868 17790901 5 264 2.0 1.0 1.5 2.0 296 chr3L 17790605 intergenic CG42815 - chr3L 17790753 intergenic CG42815 - chr3L 17790901 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-217 634 chr3L 17837624 17837656 chr3L 17837712 17837744 17 88 3.0 5.0 4.0 3.4 120 chr3L 17837624 exon Grd + chr3L 17837684 intron Grd + chr3L 17837744 exon Grd + chr3L_17_17835001 chr3L_17835001 RAL-217 635 chr3L 17947740 17947768 chr3L 17947816 17947845 4 77 0.5 1.0 0.8 2.2 105 chr3L 17947740 intergenic CR45393 - chr3L 17947792 intergenic CR45393 - chr3L 17947845 intergenic CR45393 - chr3L_4_17945001 chr3L_17945001 RAL-217 636 chr3L 17968134 17968169 chr3L 17968215 17968250 5 81 0.5 0.0 0.2 4.2 116 chr3L 17968134 intron Eip75B - chr3L 17968192 intron Eip75B - chr3L 17968250 intron Eip75B - chr3L_5_17965001 chr3L_17965001 RAL-217 637 chr3L 18175002 18175020 chr3L 18175185 18175203 6 183 7.5 1.5 4.5 1.1 201 chr3L 18175002 intron W - chr3L 18175102 intron W - chr3L 18175203 intron W - chr3L_6_18175001 chr3L_18175001 RAL-217 638 chr3L 18175021 18175031 chr3L 18175184 18175195 8 172 3.5 1.5 2.5 2.3 174 chr3L 18175021 intron W - chr3L 18175108 intron W - chr3L 18175195 intron W - chr3L_8_18175001 chr3L_18175001 RAL-217 639 chr3L 18223168 18223185 chr3L 18223251 18223268 5 83 1.0 0.0 0.5 3.3 100 chr3L 18223168 intergenic not near genes chr3L 18223218 intergenic not near genes chr3L 18223268 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-217 640 chr3L 18311798 18311820 chr3L 18311884 18311906 7 83 1.5 1.5 1.5 2.8 108 chr3L 18311798 intergenic not near genes chr3L 18311852 intergenic not near genes chr3L 18311906 intergenic not near genes chr3L_7_18310001 chr3L_18310001 RAL-217 641 chr3L 9013689 9013693 chr3L 18417066 18417066 5 9403376 21.5 17.5 19.5 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-217 642 chr3L 18520548 18520579 chr3L 18520629 18520660 10 80 1.0 0.5 0.8 5.6 112 chr3L 18520548 intergenic not near genes chr3L 18520604 intergenic not near genes chr3L 18520660 intergenic not near genes chr3L_10_18520001 chr3L_18520001 RAL-217 643 chr3L 18525462 18525483 chr3L 18525692 18525712 6 230 4.5 2.5 3.5 1.3 250 chr3L 18525462 intergenic not near genes chr3L 18525587 intergenic not near genes chr3L 18525712 intergenic not near genes chr3L_6_18525001 chr3L_18525001 RAL-217 644 chr3L 18586572 18586594 chr3L 18586670 18586693 8 99 5.0 2.5 3.8 1.7 121 chr3L 18586572 intergenic not near genes chr3L 18586632 intergenic not near genes chr3L 18586693 intergenic not near genes chr3L_8_18585001 chr3L_18585001 RAL-217 645 chr3L 18625315 18625338 chr3L 18625841 18625864 9 526 1.0 1.5 1.2 4.1 549 chr3L 18625315 intergenic not near genes chr3L 18625590 intergenic MYPT-75D + chr3L 18625864 intergenic MYPT-75D + chr3L_9_18625001 chr3L_18625001 RAL-217 646 chr3L 18658613 18658619 chr3L 18658678 18658695 4 70 2.0 7.0 4.5 0.7 82 chr3L 18658613 intron MYPT-75D + chr3L 18658654 intron MYPT-75D + chr3L 18658695 intron MYPT-75D + chr3L_4_18655001 chr3L_18655001 RAL-217 647 chr3L 18679672 18679699 chr3L 18679778 18679805 5 106 0.5 1.5 1.0 2.5 133 chr3L 18679672 intergenic not near genes chr3L 18679738 intergenic not near genes chr3L 18679805 intergenic not near genes chr3L_5_18675001 chr3L_18675001 RAL-217 648 chr3L 18772415 18772435 chr3L 18781096 18781116 roo 5 8681 2.0 0.5 1.2 2.3 8701 chr3L 18772415 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781116 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-217 649 chr3L 18861763 18861793 chr3L 18861856 18861886 4 92 0.5 2.5 1.5 1.6 123 chr3L 18861763 intergenic not near genes chr3L 18861824 intergenic not near genes chr3L 18861886 intergenic not near genes chr3L_4_18860001 chr3L_18860001 RAL-217 650 chr3L 18933630 18933660 chr3L 18933723 18933753 5 94 0.5 1.5 1.0 2.5 123 chr3L 18933630 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-217 651 chr3L 18942867 18942875 chr3L 18942980 18942983 4 111 2.0 2.0 2.0 1.3 116 chr3L 18942867 intron CG32204 - chr3L 18942925 intron CG32204 - chr3L 18942983 intron CG32204 - chr3L_4_18940001 chr3L_18940001 RAL-217 652 chr3L 19008845 19008867 chr3L 19009183 19009205 jockey 5 337 4.0 4.5 4.2 1.0 360 chr3L 19008845 intron nkd - chr3L 19009025 intron nkd - chr3L 19009205 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-217 653 chr3L 19115646 19115670 chr3L 19115823 19115848 BS 5 177 3.0 2.5 2.8 1.3 202 chr3L 19115646 intron CG14082 - chr3L 19115747 intron CG14082 - chr3L 19115848 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-217 654 chr3L 19117042 19117074 chr3L 19124488 19124521 mdg1 8 7445 3.5 2.0 2.8 2.1 7479 chr3L 19117042 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124521 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-217 655 chr3L 19138557 19138588 chr3L 19138637 19138669 10 78 6.0 2.0 4.0 2.0 112 chr3L 19138557 intron CG14082 - chr3L 19138613 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_10_19135001 chr3L_19135001 RAL-217 656 chr3L 19208059 19208092 chr3L 19209432 19209466 Doc 10 1374 3.0 3.0 3.0 2.5 1407 chr3L 19208059 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209466 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-217 657 chr3L 19257361 19257394 chr3L 19257981 19258013 7 617 0.5 1.5 1.0 3.5 652 chr3L 19257361 3` UTR nes - chr3L 19257687 3` UTR nes - chr3L 19258013 exon nes - chr3L_7_19255001 chr3L_19255001 RAL-217 658 chr3L 19426749 19426778 chr3L 19426826 19426855 5 78 4.5 6.5 5.5 0.8 106 chr3L 19426749 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426855 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-217 659 chr3L 19861831 19861844 chr3L 19863619 19863629 S-element 4 1786 0.5 1.5 1.0 2.0 1798 chr3L 19861831 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863629 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-217 660 chr3L 20143079 20143097 chr3L 20143159 20143177 5 80 3.0 0.5 1.8 1.8 98 chr3L 20143079 intergenic not near genes chr3L 20143128 intergenic not near genes chr3L 20143177 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-217 661 chr3L 20148293 20148317 chr3L 20148383 20148407 7 89 1.0 4.0 2.5 2.0 114 chr3L 20148293 intergenic not near genes chr3L 20148350 intergenic not near genes chr3L 20148407 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-217 662 chr3L 20444121 20444139 chr3L 20444206 20444226 4 86 0.5 0.0 0.2 3.3 105 chr3L 20444121 intron CG5910 + chr3L 20444174 intron CG5910 + chr3L 20444226 intron CG5910 + chr3L_4_20440001 chr3L_20440001 RAL-217 663 chr3L 20590074 20590097 chr3L 20590613 20590635 412 5 537 0.5 2.0 1.2 2.3 561 chr3L 20590074 intergenic not near genes chr3L 20590354 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-217 664 chr3L 20622996 20623000 chr3L 20623074 20623082 4 82 1.5 1.5 1.5 1.6 86 chr3L 20622996 intergenic not near genes chr3L 20623039 intergenic not near genes chr3L 20623082 intergenic not near genes chr3L_4_20620001 chr3L_20620001 RAL-217 665 chr3L 20721432 20721467 chr3L 20721551 20721586 6 119 2.0 2.0 2.0 2.0 154 chr3L 20721432 intergenic not near genes chr3L 20721509 intergenic not near genes chr3L 20721586 intergenic not near genes chr3L_6_20720001 chr3L_20720001 RAL-217 666 chr3L 20913757 20913781 chr3L 20913838 20913862 8 80 1.5 6.0 3.8 1.7 105 chr3L 20913757 intergenic CR43930 - chr3L 20913810 intergenic CR43930 - chr3L 20913862 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-217 667 chr3L 21010375 21010395 chr3L 21010482 21010502 6 105 2.5 0.5 1.5 2.4 127 chr3L 21010375 intron skd - chr3L 21010438 intron skd - chr3L 21010502 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-217 668 chr3L 21051794 21051821 chr3L 21051877 21051904 8 82 0.5 1.5 1.0 4.0 110 chr3L 21051794 intron siz + chr3L 21051849 intron siz + chr3L 21051904 intron siz + chr3L_8_21050001 chr3L_21050001 RAL-217 669 chr3L 21091619 21091633 chr3L 21093884 21093898 5 2265 5.0 18.5 11.8 0.4 2279 chr3L 21091619 intron ko - chr3L 21092758 intron ko - chr3L 21093898 intron ko - chr3L_5_21090001 chr3L_21090001 RAL-217 670 chr3L 21151862 21151897 chr3L 21156946 21156948 flea 7 5079 1.5 1.0 1.2 3.2 5086 chr3L 21151862 intron Ac78C - chr3L 21154405 intron Ac78C - chr3L 21156948 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-217 671 chr3L 21158595 21158630 chr3L 21158671 21158687 6 73 0.5 2.5 1.5 2.4 92 chr3L 21158595 intron Ac78C - chr3L 21158641 intron Ac78C - chr3L 21158687 intron Ac78C - chr3L_6_21155001 chr3L_21155001 RAL-217 672 chr3L 21194163 21194186 chr3L 21194296 21194319 4 133 1.5 1.0 1.2 1.8 156 chr3L 21194163 intergenic not near genes chr3L 21194241 intergenic not near genes chr3L 21194319 intergenic park - chr3L_4_21190001 chr3L_21190001 RAL-217 673 chr3L 21229188 21229212 chr3L 21229275 21229299 8 87 2.0 2.5 2.2 2.5 111 chr3L 21229188 intron Eip78C + chr3L 21229244 intron Eip78C + chr3L 21229299 intron Eip78C + chr3L_8_21225001 chr3L_21225001 RAL-217 674 chr3L 21232465 21232487 chr3L 21232584 21232608 4 120 2.5 1.5 2.0 1.3 143 chr3L 21232465 intron Eip78C + chr3L 21232536 intron Eip78C + chr3L 21232608 intron Eip78C + chr3L_4_21230001 chr3L_21230001 RAL-217 675 chr3L 21347075 21347109 chr3L 21347153 21347187 5 78 3.5 4.0 3.8 1.0 112 chr3L 21347075 intron,intron CG32436 +,ebd2 - chr3L 21347131 intron,intron CG32436 +,ebd2 - chr3L 21347187 intron,intron CG32436 +,ebd2 - chr3L_5_21345001 chr3L_21345001 RAL-217 676 chr3L 21415530 21415559 chr3L 21415608 21415636 6 78 2.0 3.0 2.5 1.7 106 chr3L 21415530 intron rgn + chr3L 21415583 intron rgn + chr3L 21415636 intron rgn + chr3L_6_21415001 chr3L_21415001 RAL-217 677 chr3L 21498835 21498868 chr3L 21500471 21500504 1360 6 1636 3.5 4.0 3.8 1.2 1669 chr3L 21498835 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500504 intron Glg1 - chr3L_6_21495001 chr3L_21495001 RAL-217 678 chr3L 21639196 21639226 chr3L 21639275 21639305 10 79 1.0 2.5 1.8 3.6 109 chr3L 21639196 intergenic CG32444 +,CG32445 + chr3L 21639250 intergenic CG32445 +,CG32444 + chr3L 21639305 intergenic CG32445 +,CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-217 679 chr3L 21749322 21749340 chr3L 21754475 21754500 Doc 8 5158 4.0 2.5 3.2 1.9 5178 chr3L 21749322 intron Syn1 - chr3L 21751911 intron Syn1 - chr3L 21754500 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-217 680 chr3L 21950332 21950357 chr3L 21950409 21950434 12 76 5.0 6.5 5.8 1.8 102 chr3L 21950332 exon CG7448 + chr3L 21950383 exon CG7448 + chr3L 21950434 intron CG7448 + chr3L_12_21950001 chr3L_21950001 RAL-217 681 chr3L 21975682 21975706 chr3L 21975914 21975940 4 234 0.5 2.5 1.5 1.6 258 chr3L 21975682 intron CG7470 + chr3L 21975811 intron CG7470 + chr3L 21975940 intron CG7470 + chr3L_4_21975001 chr3L_21975001 RAL-217 682 chr3L 22010631 22010657 chr3L 22010780 22010806 7 149 0.5 1.0 0.8 3.9 175 chr3L 22010631 intergenic not near genes chr3L 22010718 intergenic not near genes chr3L 22010806 intergenic not near genes chr3L_7_22010001 chr3L_22010001 RAL-217 683 chr3L 22016833 22016852 chr3L 22016974 22016990 5 140 2.5 1.5 2.0 1.7 157 chr3L 22016833 intergenic not near genes chr3L 22016912 intergenic not near genes chr3L 22016990 intergenic not near genes chr3L_5_22015001 chr3L_22015001 RAL-217 684 chr3L 22023216 22023249 chr3L 22023307 22023341 9 90 0.5 2.5 1.5 3.6 125 chr3L 22023216 intergenic not near genes chr3L 22023278 intergenic not near genes chr3L 22023341 intergenic not near genes chr3L_9_22020001 chr3L_22020001 RAL-217 685 chr3L 22169465 22169489 chr3L 22169558 22169582 5 93 1.5 2.0 1.8 1.8 117 chr3L 22169465 intron olf413 + chr3L 22169524 intron olf413 + chr3L 22169582 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-217 686 chr3L 22399580 22399606 chr3L 22399663 22399689 7 83 2.5 1.5 2.0 2.3 109 chr3L 22399580 intron Ten-m - chr3L 22399634 intron Ten-m - chr3L 22399689 intron Ten-m - chr3L_7_22395001 chr3L_22395001 RAL-217 687 chr3L 22447210 22447231 chr3L 22447301 22447322 8 91 0.5 3.5 2.0 2.7 112 chr3L 22447210 intergenic not near genes chr3L 22447266 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_8_22445001 chr3L_22445001 RAL-217 688 chr3L 22477055 22477084 chr3L 22477145 22477162 7 88 0.5 4.0 2.2 2.2 107 chr3L 22477055 intergenic not near genes chr3L 22477108 intergenic not near genes chr3L 22477162 intergenic not near genes chr3L_7_22475001 chr3L_22475001 RAL-217 689 chr3L 22555789 22555802 chr3L 22563241 22563272 blood 5 7456 1.5 0.5 1.0 2.5 7483 chr3L 22555789 intergenic not near genes chr3L 22559530 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-217 690 chr3L 22577617 22577641 chr3L 22582403 22582428 Doc 7 4787 5.0 3.5 4.2 1.3 4811 chr3L 22577617 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582428 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-217 691 chr3L 22603923 22603945 chr3L 22604005 22604027 6 79 3.5 2.5 3.0 1.5 104 chr3L 22603923 intron CG14459 - chr3L 22603975 intron CG14459 - chr3L 22604027 intron CG14459 - chr3L_6_22600001 chr3L_22600001 RAL-217 692 chr3L 22617195 22617218 chr3L 22624645 22624670 blood 6 7452 4.0 0.5 2.2 1.9 7475 chr3L 22617195 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624670 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-217 693 chr3L 22797329 22797358 chr3L 22797422 22797451 7 91 2.0 0.0 1.0 3.5 122 chr3L 22797329 3` UTR jim - chr3L 22797390 3` UTR jim - chr3L 22797451 3` UTR jim - chr3L_7_22795001 chr3L_22795001 RAL-217 694 chr3L 22853463 22853719 chr3L 22853548 22853805 14 86 2.5 3.0 2.8 3.7 342 chr3L 22853463 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853805 5` UTR CR43426 + chr3L_14_22850001 chr3L_22850001 RAL-217 695 chr3L 9102749 9102779 chr3L 22908066 22908066 6 13805297 26.0 9.0 17.5 0.3 13805317 chr3L 9102749 exon bol - chr3L 16005408 exon mRpS31 + chr3L 22908066 intergenic not near genes chr3L_6_16005001 chr3L_16005001 RAL-217 696 chr3L 22909024 22909052 chr3L 22909114 22909143 9 90 2.5 1.5 2.0 3.0 119 chr3L 22909024 intergenic CR45661 + chr3L 22909084 intergenic CR45661 + chr3L 22909143 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-217 697 chr3L 22931728 22931754 chr3L 22932052 22932077 7 324 1.0 4.0 2.5 2.0 349 chr3L 22931728 intergenic not near genes chr3L 22931902 intergenic not near genes chr3L 22932077 intergenic not near genes chr3L_7_22930001 chr3L_22930001 RAL-217 698 chr3L 23182259 23182295 chr3L 23182373 23182408 15 113 3.0 4.0 3.5 3.3 149 chr3L 23182259 intron CG34031 + chr3L 23182334 intron CG34031 + chr3L 23182408 intron CG34031 + chr3L_15_23180001 chr3L_23180001 RAL-217 699 chr3L 23218050 23218071 chr3L 23218527 23218551 5 479 3.5 2.5 3.0 1.2 501 chr3L 23218050 intron nAChRalpha4 + chr3L 23218300 intron nAChRalpha4 + chr3L 23218551 intron nAChRalpha4 + chr3L_5_23215001 chr3L_23215001 RAL-217 700 chr3L 23750940 23750952 chr3L 23751141 23751163 5 203 20.0 10.5 15.2 0.3 223 chr3L 23750940 intergenic not near genes chr3L 23751052 intergenic not near genes chr3L 23751163 intergenic not near genes chr3L_5_23750001 chr3L_23750001 RAL-217 701 chr3L 24008391 24008413 chr3L 24008620 24008642 13 229 4.0 3.0 3.5 2.9 251 chr3L 24008391 intergenic not near genes chr3L 24008516 intergenic not near genes chr3L 24008642 intergenic not near genes chr3L_13_24005001 chr3L_24005001 RAL-217 702 chr3L 24168801 24168822 chr3L 24176115 24176150 ZAM 5 7321 3.0 3.5 3.2 1.2 7349 chr3L 24168801 intron Snap25 + chr3L 24172476 intron Snap25 + chr3L 24176150 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-217 703 chr3L 25354041 25354065 chr3L 25354223 25354225 7 178 1.5 4.0 2.8 1.8 184 chr3L 25354041 intergenic not near genes chr3L 25354133 intergenic not near genes chr3L 25354225 intergenic not near genes chr3L_7_25350001 chr3L_25350001 RAL-217 704 chr3R 1252415 1252424 chr3R 1266230 1266236 297 5 13812 6.0 2.5 4.2 1.0 13821 chr3R 1252415 intergenic not near genes chr3R 1259326 intergenic not near genes chr3R 1266236 intergenic not near genes chr3R_5_1255001 chr3R_1255001 RAL-217 705 chr3R 2490919 2490930 chr3R 2491004 2491014 5 96 1.0 2.0 1.5 2.0 95 chr3R 2490919 intergenic not near genes chr3R 2490966 intergenic not near genes chr3R 2491014 intergenic not near genes chr3R_5_2490001 chr3R_2490001 RAL-217 706 chr3R 4366757 4366790 chr3R 4375140 4375173 roo 4 8383 0.0 1.0 0.5 2.7 8416 chr3R 4366757 3` UTR CG1090 + chr3R 4370965 intergenic not near genes chr3R 4375173 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-217 707 chr3R 4408410 4408426 chr3R 4412714 4412730 Juan 4 4304 0.5 1.0 0.8 2.2 4320 chr3R 4408410 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412730 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-217 708 chr3R 4609551 4609580 chr3R 4610714 4610744 1360 5 1164 3.0 2.0 2.5 1.4 1193 chr3R 4609551 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-217 709 chr3R 4753240 4753267 chr3R 4757543 4757570 F-element 7 4303 4.5 4.5 4.5 1.3 4330 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755405 intron,intron atms +,CG44098 - chr3R 4757570 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-217 710 chr3R 4769161 4769188 chr3R 4769239 4769266 7 78 5.0 2.0 3.5 1.6 105 chr3R 4769161 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-217 711 chr3R 4796112 4796137 chr3R 4796235 4796260 8 123 3.0 2.0 2.5 2.3 148 chr3R 4796112 intron ctrip - chr3R 4796186 intron ctrip - chr3R 4796260 intron ctrip - chr3R_8_4795001 chr3R_4795001 RAL-217 712 chr3R 4861565 4861597 chr3R 4861646 4861678 11 80 2.5 3.5 3.0 2.8 113 chr3R 4861565 intron opa + chr3R 4861622 intron opa + chr3R 4861678 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-217 713 chr3R 4943618 4943622 chr3R 4943716 4943727 4 103 4.5 1.0 2.8 1.1 109 chr3R 4943618 intron Cdep + chr3R 4943672 intron Cdep + chr3R 4943727 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-217 714 chr3R 4966006 4966027 chr3R 4966097 4966118 5 92 2.0 4.0 3.0 1.2 112 chr3R 4966006 intron CG1124 + chr3R 4966062 intron CG1124 + chr3R 4966118 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-217 715 chr3R 5021338 5021359 chr3R 5021426 5021447 7 85 2.5 2.0 2.2 2.2 109 chr3R 5021338 5` UTR CR45585 + chr3R 5021392 5` UTR CR45585 + chr3R 5021447 5` UTR CR45585 + chr3R_7_5020001 chr3R_5020001 RAL-217 716 chr3R 5059964 5059978 chr3R 5060376 5060390 4 412 0.0 2.5 1.2 1.8 426 chr3R 5059964 intergenic not near genes chr3R 5060177 intergenic not near genes chr3R 5060390 intergenic not near genes chr3R_4_5060001 chr3R_5060001 RAL-217 717 chr3R 5115013 5115046 chr3R 5115105 5115139 10 94 1.5 3.5 2.5 2.9 126 chr3R 5115013 intergenic not near genes chr3R 5115076 intergenic not near genes chr3R 5115139 intergenic not near genes chr3R_10_5115001 chr3R_5115001 RAL-217 718 chr3R 5142302 5142319 chr3R 5142385 5142402 5 83 0.5 1.5 1.0 2.5 100 chr3R 5142302 intergenic not near genes chr3R 5142352 intergenic not near genes chr3R 5142402 intergenic not near genes chr3R_5_5140001 chr3R_5140001 RAL-217 719 chr3R 5278088 5278109 chr3R 5278169 5278190 4 80 6.0 1.0 3.5 0.9 102 chr3R 5278088 intron mtd - chr3R 5278139 intron mtd - chr3R 5278190 intron mtd - chr3R_4_5275001 chr3R_5275001 RAL-217 720 chr3R 5284247 5284284 chr3R 5284332 5284369 10 80 2.0 3.0 2.5 2.9 122 chr3R 5284247 intron mtd - chr3R 5284308 intron mtd - chr3R 5284369 intron mtd - chr3R_10_5280001 chr3R_5280001 RAL-217 721 chr3R 5338402 5338430 chr3R 5343579 5343587 Rt1c 15 5176 4.0 9.0 6.5 2.0 5185 chr3R 5338402 intron mtd - chr3R 5340994 intron mtd - chr3R 5343587 intron mtd - chr3R_15_5340001 chr3R_5340001 RAL-217 722 chr3R 5497043 5497076 chr3R 5497918 5497948 19 872 31.5 43.0 37.2 0.5 905 chr3R 5497043 intron CG31547 - chr3R 5497496 intron CG31547 - chr3R 5497948 intron CG31547 - chr3R_19_5495001 chr3R_5495001 RAL-217 723 chr3R 5746013 5746042 chr3R 5746254 5746283 pogo 6 240 3.5 3.0 3.2 1.4 270 chr3R 5746013 3` UTR Madm + chr3R 5746148 3` UTR Madm + chr3R 5746283 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-217 724 chr3R 5809115 5809142 chr3R 5809356 5809381 pogo 4 235 2.0 0.5 1.2 1.8 266 chr3R 5809115 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809381 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-217 725 chr3R 5927568 5927589 chr3R 5927808 5927829 pogo 4 240 1.5 1.5 1.5 1.6 261 chr3R 5927568 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-217 726 chr3R 5984128 5984145 chr3R 5984246 5984263 5 118 2.0 2.5 2.2 1.6 135 chr3R 5984128 intergenic not near genes chr3R 5984196 intergenic not near genes chr3R 5984263 intergenic not near genes chr3R_5_5980001 chr3R_5980001 RAL-217 727 chr3R 5988903 5988926 chr3R 5989104 5989127 6 200 3.0 2.0 2.5 1.7 224 chr3R 5988903 intergenic CR44927 + chr3R 5989015 intergenic CR44927 + chr3R 5989127 intergenic CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-217 728 chr3R 6015960 6015992 chr3R 6024441 6024473 Tirant 11 8479 3.5 4.0 3.8 2.3 8513 chr3R 6015960 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_11_6020001 chr3R_6020001 RAL-217 729 chr3R 6048755 6048791 chr3R 6048859 6048895 7 100 3.5 2.0 2.8 1.8 140 chr3R 6048755 intergenic not near genes chr3R 6048825 intergenic not near genes chr3R 6048895 intergenic not near genes chr3R_7_6045001 chr3R_6045001 RAL-217 730 chr3R 6062153 6062175 chr3R 6062270 6062292 6 117 1.5 2.5 2.0 2.0 139 chr3R 6062153 intergenic not near genes chr3R 6062222 intergenic not near genes chr3R 6062292 intergenic not near genes chr3R_6_6060001 chr3R_6060001 RAL-217 731 chr3R 6158519 6158541 chr3R 6167092 6167124 Tirant 4 8580 1.0 1.0 1.0 2.0 8605 chr3R 6158519 intergenic not near genes chr3R 6162822 intergenic not near genes chr3R 6167124 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-217 732 chr3R 6226618 6226629 chr3R 6226706 6226717 5 88 3.5 0.0 1.8 1.8 99 chr3R 6226618 intergenic not near genes chr3R 6226668 intergenic not near genes chr3R 6226717 intergenic not near genes chr3R_5_6225001 chr3R_6225001 RAL-217 733 chr3R 6421110 6421140 chr3R 6421274 6421304 11 162 2.5 3.5 3.0 2.8 194 chr3R 6421110 intron gpp + chr3R 6421207 intron gpp + chr3R 6421304 intron gpp + chr3R_11_6420001 chr3R_6420001 RAL-217 734 chr3R 6507505 6507539 chr3R 6507593 6507597 4 76 1.5 3.0 2.2 1.2 92 chr3R 6507505 intergenic not near genes chr3R 6507551 intergenic not near genes chr3R 6507597 intergenic not near genes chr3R_4_6505001 chr3R_6505001 RAL-217 735 chr3R 6571655 6571682 chr3R 6571839 6571865 7 184 3.5 2.5 3.0 1.8 210 chr3R 6571655 intron dpr11 - chr3R 6571760 intron dpr11 - chr3R 6571865 intron dpr11 - chr3R_7_6570001 chr3R_6570001 RAL-217 736 chr3R 6689336 6689371 chr3R 6689418 6689452 8 78 2.0 0.0 1.0 4.0 116 chr3R 6689336 intergenic Ccp84Af - chr3R 6689394 intergenic Ccp84Af - chr3R 6689452 intergenic Ccp84Af - chr3R_8_6685001 chr3R_6685001 RAL-217 737 chr3R 6737506 6737527 chr3R 6739289 6739314 Doc 9 1786 0.0 2.0 1.0 4.5 1808 chr3R 6737506 intron pb - chr3R 6738410 intron pb - chr3R 6739314 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-217 738 chr3R 6987410 6987429 chr3R 6987493 6987512 4 83 2.5 1.5 2.0 1.3 102 chr3R 6987410 intron Antp - chr3R 6987461 intron Antp - chr3R 6987512 intron Antp - chr3R_4_6985001 chr3R_6985001 RAL-217 739 chr3R 7103283 7103317 chr3R 7103359 7103391 7 75 1.5 1.0 1.2 3.2 108 chr3R 7103283 intron Alh - chr3R 7103337 intron Alh - chr3R 7103391 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-217 740 chr3R 7136815 7136848 chr3R 7136902 7136935 4 86 0.0 0.5 0.2 3.3 120 chr3R 7136815 intron Fer1 + chr3R 7136875 intron Fer1 + chr3R 7136935 intron Fer1 + chr3R_4_7135001 chr3R_7135001 RAL-217 741 chr3R 7147041 7147046 chr3R 7147603 7147632 6 569 16.5 9.0 12.8 0.4 591 chr3R 7147041 intron,exon CG2656 +,gfzf - chr3R 7147336 intron,intron CG2656 +,gfzf - chr3R 7147632 intron,intron CG2656 +,gfzf - chr3R_6_7145001 chr3R_7145001 RAL-217 742 chr3R 7167383 7167412 chr3R 7167480 7167509 5 97 2.0 2.5 2.2 1.6 126 chr3R 7167383 intron sas + chr3R 7167446 intron sas + chr3R 7167509 intron sas + chr3R_5_7165001 chr3R_7165001 RAL-217 743 chr3R 7499745 7499776 chr3R 7499823 7499854 7 78 2.0 2.0 2.0 2.3 109 chr3R 7499745 intron alpha-Est9 - chr3R 7499800 intron alpha-Est9 - chr3R 7499854 intron alpha-Est9 - chr3R_7_7495001 chr3R_7495001 RAL-217 744 chr3R 7655007 7655034 chr3R 7655088 7655116 7 81 1.0 2.0 1.5 2.8 109 chr3R 7655007 intergenic not near genes chr3R 7655062 intergenic not near genes chr3R 7655116 intergenic not near genes chr3R_7_7655001 chr3R_7655001 RAL-217 745 chr3R 7677918 7677933 chr3R 7678031 7678045 4 112 0.0 0.0 0.0 4.0 127 chr3R 7677918 intron Nlg1 + chr3R 7677982 intron Nlg1 + chr3R 7678045 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-217 746 chr3R 7680843 7680875 chr3R 7681474 7681506 9 630 0.0 1.5 0.8 5.0 663 chr3R 7680843 intron Nlg1 + chr3R 7681174 intron Nlg1 + chr3R 7681506 intron Nlg1 + chr3R_9_7680001 chr3R_7680001 RAL-217 747 chr3R 7849641 7849670 chr3R 7850808 7850837 1360 4 1167 0.0 0.5 0.2 3.3 1196 chr3R 7849641 intron CG34384 + chr3R 7850239 intron CG34384 + chr3R 7850837 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-217 748 chr3R 8101762 8101790 chr3R 8104846 8104874 G2 7 3084 3.5 1.5 2.5 2.0 3112 chr3R 8101762 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-217 749 chr3R 8107388 8107413 chr3R 8107522 8107547 7 134 4.0 2.0 3.0 1.8 159 chr3R 8107388 intron puc + chr3R 8107468 intron puc + chr3R 8107547 intron puc + chr3R_7_8105001 chr3R_8105001 RAL-217 750 chr3R 8336532 8336558 chr3R 8336625 8336651 13 92 5.0 4.0 4.5 2.4 119 chr3R 8336532 intergenic not near genes chr3R 8336592 intergenic not near genes chr3R 8336651 intergenic not near genes chr3R_13_8335001 chr3R_8335001 RAL-217 751 chr3R 8339241 8339247 chr3R 21907534 21907536 20 13568289 13.5 21.0 17.2 1.1 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_20_15120001 chr3R_15120001 RAL-217 752 chr3R 8403013 8403041 chr3R 8412179 8412207 roo 17 9165 3.0 5.0 4.0 3.4 9194 chr3R 8403013 intron CG45263 - chr3R 8407610 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_17_8405001 chr3R_8405001 RAL-217 753 chr3R 8478082 8478110 chr3R 8478162 8478190 4 79 0.5 2.5 1.5 1.6 108 chr3R 8478082 intergenic CG45263 - chr3R 8478136 intergenic not near genes chr3R 8478190 intergenic not near genes chr3R_4_8475001 chr3R_8475001 RAL-217 754 chr3R 8482900 8482926 chr3R 8482976 8483002 6 74 1.0 4.5 2.8 1.6 102 chr3R 8482900 intergenic not near genes chr3R 8482951 intergenic not near genes chr3R 8483002 intergenic not near genes chr3R_6_8480001 chr3R_8480001 RAL-217 755 chr3R 8482929 8482930 chr3R 8482975 8483006 5 70 1.0 4.5 2.8 1.3 77 chr3R 8482929 intergenic not near genes chr3R 8482968 intergenic not near genes chr3R 8483006 intergenic not near genes chr3R_5_8480001 chr3R_8480001 RAL-217 756 chr3R 8601774 8601787 chr3R 8610926 8610940 roo 4 9153 4.5 3.0 3.8 0.8 9166 chr3R 8601774 intron 5-HT2B + chr3R 8606357 intron 5-HT2B + chr3R 8610940 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-217 757 chr3R 8707380 8707388 chr3R 8709821 8709829 jockey 7 2441 3.5 6.0 4.8 1.2 2449 chr3R 8707380 intergenic not near genes chr3R 8708604 intergenic not near genes chr3R 8709829 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-217 758 chr3R 9082051 9082068 chr3R 9082144 9082162 7 92 3.0 1.5 2.2 2.2 111 chr3R 9082051 intron pum - chr3R 9082106 intron pum - chr3R 9082162 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-217 759 chr3R 9101855 9101869 chr3R 9101952 9101967 5 98 1.0 2.5 1.8 1.8 112 chr3R 9101855 intron pum - chr3R 9101911 intron pum - chr3R 9101967 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-217 760 chr3R 9204260 9204280 chr3R 9204336 9204364 10 85 1.5 4.0 2.8 2.6 104 chr3R 9204260 intron pum - chr3R 9204312 intron pum - chr3R 9204364 intron pum - chr3R_10_9200001 chr3R_9200001 RAL-217 761 chr3R 9278777 9278809 chr3R 9284037 9284068 Rt1a 10 5260 2.0 5.0 3.5 2.2 5291 chr3R 9278777 intergenic not near genes chr3R 9281422 intergenic not near genes chr3R 9284068 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-217 762 chr3R 9381398 9381412 chr3R 9381474 9381487 6 76 3.0 3.5 3.2 1.4 89 chr3R 9381398 intron FER - chr3R 9381442 intron FER - chr3R 9381487 intron FER - chr3R_6_9380001 chr3R_9380001 RAL-217 763 chr3R 9620956 9620956 chr3R 21907534 21907536 4 12286580 8.5 21.0 14.8 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-217 764 chr3R 9699974 9699992 chr3R 9700063 9700081 1360 5 89 5.0 2.0 3.5 1.1 107 chr3R 9699974 intron Unc-115a - chr3R 9700028 intron Unc-115a - chr3R 9700081 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-217 765 chr3R 9739911 9739941 chr3R 9741857 9741887 4 1946 7.5 9.0 8.2 0.4 1976 chr3R 9739911 5` UTR CG12950 - chr3R 9740899 5` UTR Pnn + chr3R 9741887 exon Pnn + chr3R_4_9740001 chr3R_9740001 RAL-217 766 chr3R 9765921 9765941 chr3R 9765997 9766017 4 76 3.5 6.0 4.8 0.7 96 chr3R 9765921 3` UTR CG8478 + chr3R 9765969 3` UTR CG8478 + chr3R 9766017 3` UTR CG8478 + chr3R_4_9765001 chr3R_9765001 RAL-217 767 chr3R 9836881 9836900 chr3R 9836969 9836988 6 88 4.0 5.5 4.8 1.0 107 chr3R 9836881 intron Teh1 - chr3R 9836934 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-217 768 chr3R 9853310 9853315 chr3R 9853370 9853391 6 72 0.5 3.5 2.0 2.0 81 chr3R 9853310 intron Teh1 - chr3R 9853350 intron Teh1 - chr3R 9853391 intron Teh1 - chr3R_6_9850001 chr3R_9850001 RAL-217 769 chr3R 9877202 9877223 chr3R 9877278 9877299 5 76 1.5 2.5 2.0 1.7 97 chr3R 9877202 intron,intron Glut4EF +,CR45029 - chr3R 9877250 intron,intron Glut4EF +,CR45029 - chr3R 9877299 intron,intron Glut4EF +,CR45029 - chr3R_5_9875001 chr3R_9875001 RAL-217 770 chr3R 9942320 9942328 chr3R 9942397 9942407 5 78 2.5 2.0 2.2 1.6 87 chr3R 9942320 intron Glut4EF + chr3R 9942364 intron Glut4EF + chr3R 9942407 intron Glut4EF + chr3R_5_9940001 chr3R_9940001 RAL-217 771 chr3R 10275557 10275581 chr3R 10275634 10275658 5 77 0.0 1.5 0.8 2.8 101 chr3R 10275557 intron CG43143 + chr3R 10275608 intron CG43143 + chr3R 10275658 intron CG43143 + chr3R_5_10275001 chr3R_10275001 RAL-217 772 chr3R 10430681 10430699 chr3R 10430770 10430788 6 89 3.0 8.5 5.8 0.9 107 chr3R 10430681 intergenic not near genes chr3R 10430734 intergenic not near genes chr3R 10430788 intergenic not near genes chr3R_6_10430001 chr3R_10430001 RAL-217 773 chr3R 10474769 10474786 chr3R 10474872 10474889 6 103 2.5 3.0 2.8 1.6 120 chr3R 10474769 intergenic not near genes chr3R 10474829 intergenic not near genes chr3R 10474889 intergenic not near genes chr3R_6_10470001 chr3R_10470001 RAL-217 774 chr3R 10531875 10531889 chr3R 10531956 10531970 4 81 2.5 1.0 1.8 1.4 95 chr3R 10531875 intron hth - chr3R 10531922 intron hth - chr3R 10531970 intron hth - chr3R_4_10530001 chr3R_10530001 RAL-217 775 chr3R 10718267 10718298 chr3R 10718344 10718375 14 77 3.5 1.0 2.2 4.4 108 chr3R 10718267 intergenic not near genes chr3R 10718321 intergenic not near genes chr3R 10718375 intergenic not near genes chr3R_14_10715001 chr3R_10715001 RAL-217 776 chr3R 10745426 10745455 chr3R 10745513 10745542 6 85 2.5 3.0 2.8 1.6 116 chr3R 10745426 intron TkR86C - chr3R 10745484 intron TkR86C - chr3R 10745542 intron TkR86C - chr3R_6_10745001 chr3R_10745001 RAL-217 777 chr3R 10868597 10868609 chr3R 10868675 10868678 4 76 4.0 3.5 3.8 0.8 81 chr3R 10868597 5` UTR SelR - chr3R 10868638 5` UTR SelR - chr3R 10868678 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-217 778 chr3R 10868620 10868624 chr3R 10868673 10868686 4 60 1.0 3.5 2.2 1.2 66 chr3R 10868620 5` UTR SelR - chr3R 10868653 intergenic SelR -,Tsp86D + chr3R 10868686 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-217 779 chr3R 10919685 10919713 chr3R 10919763 10919791 6 78 3.5 2.0 2.8 1.6 106 chr3R 10919685 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919791 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-217 780 chr3R 11054577 11054591 chr3R 11054674 11054687 4 97 1.0 0.5 0.8 2.2 110 chr3R 11054577 intergenic not near genes chr3R 11054632 intergenic not near genes chr3R 11054687 intergenic not near genes chr3R_4_11050001 chr3R_11050001 RAL-217 781 chr3R 11059001 11059026 chr3R 11059115 11059140 6 114 0.0 4.0 2.0 2.0 139 chr3R 11059001 intergenic not near genes chr3R 11059070 intergenic not near genes chr3R 11059140 intergenic not near genes chr3R_6_11055001 chr3R_11055001 RAL-217 782 chr3R 11085775 11085807 chr3R 11086070 11086102 6 295 0.0 0.5 0.2 5.0 327 chr3R 11085775 intergenic CR44940 - chr3R 11085938 intergenic CR44940 - chr3R 11086102 intergenic not near genes chr3R_6_11085001 chr3R_11085001 RAL-217 783 chr3R 11151121 11151147 chr3R 11151316 11151342 4 193 2.0 2.5 2.2 1.2 221 chr3R 11151121 3` UTR Ugt86Di - chr3R 11151232 3` UTR Ugt86Di - chr3R 11151342 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-217 784 chr3R 11174607 11174615 chr3R 11175321 11175329 5 714 15.5 20.0 17.8 0.3 722 chr3R 11174607 exon Ugt86Dj - chr3R 11174968 intron Ugt86Dj - chr3R 11175329 exon Ugt86Dj - chr3R_5_11170001 chr3R_11170001 RAL-217 785 chr3R 11242250 11242283 chr3R 11242339 11242372 4 89 3.0 2.0 2.5 1.1 122 chr3R 11242250 3` UTR CG17734 - chr3R 11242311 3` UTR CG17734 - chr3R 11242372 3` UTR CG17734 - chr3R_4_11240001 chr3R_11240001 RAL-217 786 chr3R 11302239 11302255 chr3R 11303073 11303089 4 834 5.5 20.0 12.8 0.3 850 chr3R 11302239 intron CR31386 - chr3R 11302664 intron CR31386 - chr3R 11303089 intron CR31386 - chr3R_4_11300001 chr3R_11300001 RAL-217 787 chr3R 11345639 11345649 chr3R 11345738 11345748 4 99 5.0 4.5 4.8 0.7 109 chr3R 11345639 intron pros + chr3R 11345694 intron pros + chr3R 11345748 intron pros + chr3R_4_11345001 chr3R_11345001 RAL-217 788 chr3R 11345655 11345670 chr3R 11345735 11345769 7 94 3.5 4.0 3.8 1.5 114 chr3R 11345655 intron pros + chr3R 11345712 intron pros + chr3R 11345769 intron pros + chr3R_7_11345001 chr3R_11345001 RAL-217 789 chr3R 11443681 11443711 chr3R 11443771 11443803 5 90 4.0 4.0 4.0 1.0 122 chr3R 11443681 intron,intron sals -,CG17230 + chr3R 11443742 intron,intron sals -,CG17230 + chr3R 11443803 intron,intron sals -,CG17230 + chr3R_5_11440001 chr3R_11440001 RAL-217 790 chr3R 11461267 11461301 chr3R 11461347 11461381 8 77 2.0 2.0 2.0 2.7 114 chr3R 11461267 intron CG17230 + chr3R 11461324 intron CG17230 + chr3R 11461381 intron CG17230 + chr3R_8_11460001 chr3R_11460001 RAL-217 791 chr3R 11513847 11513878 chr3R 11513930 11513961 15 82 1.5 4.5 3.0 3.8 114 chr3R 11513847 intergenic not near genes chr3R 11513904 intergenic not near genes chr3R 11513961 intergenic not near genes chr3R_15_11510001 chr3R_11510001 RAL-217 792 chr3R 11518812 11518846 chr3R 11518903 11518936 9 90 0.0 3.5 1.8 3.2 124 chr3R 11518812 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518936 intergenic not near genes chr3R_9_11515001 chr3R_11515001 RAL-217 793 chr3R 11694725 11694750 chr3R 11694818 11694843 6 93 0.5 2.5 1.5 2.4 118 chr3R 11694725 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694843 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-217 794 chr3R 11695740 11695766 chr3R 11695819 11695847 6 80 0.5 0.5 0.5 4.0 107 chr3R 11695740 intergenic not near genes chr3R 11695794 intergenic not near genes chr3R 11695847 intergenic not near genes chr3R_6_11695001 chr3R_11695001 RAL-217 795 chr3R 11734163 11734186 chr3R 11734281 11734305 9 119 3.5 1.5 2.5 2.6 142 chr3R 11734163 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734305 intergenic not near genes chr3R_9_11730001 chr3R_11730001 RAL-217 796 chr3R 11841066 11841096 chr3R 11846257 11846286 BS 6 5190 1.5 1.0 1.2 2.7 5220 chr3R 11841066 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-217 797 chr3R 11853437 11853472 chr3R 11853586 11853619 7 147 0.5 1.0 0.8 3.9 182 chr3R 11853437 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853619 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-217 798 chr3R 11853769 11853796 chr3R 11853874 11853901 6 105 1.0 1.0 1.0 3.0 132 chr3R 11853769 intron CG6959 - chr3R 11853835 intron CG6959 - chr3R 11853901 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-217 799 chr3R 11919303 11919326 chr3R 11919390 11919413 6 85 4.0 4.0 4.0 1.2 110 chr3R 11919303 intron Cad87A - chr3R 11919358 intron Cad87A - chr3R 11919413 intron Cad87A - chr3R_6_11915001 chr3R_11915001 RAL-217 800 chr3R 11923641 11923654 chr3R 11923737 11923750 5 96 2.5 5.5 4.0 1.0 109 chr3R 11923641 intron Cad87A - chr3R 11923696 intron Cad87A - chr3R 11923750 intron Cad87A - chr3R_5_11920001 chr3R_11920001 RAL-217 801 chr3R 11981375 11981397 chr3R 11983806 11983811 6 2418 2.5 20.5 11.5 0.5 2436 chr3R 11981375 exon CG12224 - chr3R 11982593 5` UTR CG12224 - chr3R 11983811 exon CG3397 - chr3R_6_11980001 chr3R_11980001 RAL-217 802 chr3R 11994993 11995022 chr3R 11995073 11995100 9 74 2.5 1.5 2.0 3.0 107 chr3R 11994993 exon Tk - chr3R 11995046 exon Tk - chr3R 11995100 exon Tk - chr3R_9_11995001 chr3R_11995001 RAL-217 803 chr3R 12097247 12097267 chr3R 12097351 12097371 6 104 2.0 1.5 1.8 2.1 124 chr3R 12097247 intron dpr17 + chr3R 12097309 intron dpr17 + chr3R 12097371 intron dpr17 + chr3R_6_12095001 chr3R_12095001 RAL-217 804 chr3R 12178247 12178265 chr3R 12178397 12178416 5 151 2.5 3.0 2.8 1.3 169 chr3R 12178247 intergenic not near genes chr3R 12178332 intergenic not near genes chr3R 12178416 intergenic not near genes chr3R_5_12175001 chr3R_12175001 RAL-217 805 chr3R 12214345 12214368 chr3R 12214429 12214459 14 89 3.5 1.0 2.2 4.4 114 chr3R 12214345 3` UTR CG4848 - chr3R 12214402 3` UTR CG4848 - chr3R 12214459 3` UTR CG4848 - chr3R_14_12210001 chr3R_12210001 RAL-217 806 chr3R 12599375 12599407 chr3R 12599458 12599488 9 82 0.0 4.0 2.0 3.0 113 chr3R 12599375 intergenic not near genes chr3R 12599432 intergenic not near genes chr3R 12599488 intergenic not near genes chr3R_9_12595001 chr3R_12595001 RAL-217 807 chr3R 12628620 12628635 chr3R 12628703 12628718 6 82 9.0 7.0 8.0 0.7 98 chr3R 12628620 intron Snx3 + chr3R 12628669 intron Snx3 + chr3R 12628718 intron Snx3 + chr3R_6_12625001 chr3R_12625001 RAL-217 808 chr3R 12676778 12676809 chr3R 12676871 12676902 10 93 1.0 6.5 3.8 2.1 124 chr3R 12676778 3` UTR mbo - chr3R 12676840 3` UTR mbo - chr3R 12676902 exon mbo - chr3R_10_12675001 chr3R_12675001 RAL-217 809 chr3R 12779185 12779209 chr3R 12779262 12779286 6 76 11.0 11.5 11.2 0.5 101 chr3R 12779185 intron beat-Vc - chr3R 12779236 intron beat-Vc - chr3R 12779286 intron beat-Vc - chr3R_6_12775001 chr3R_12775001 RAL-217 810 chr3R 13206659 13206680 chr3R 13206896 13206917 8 236 3.0 3.5 3.2 1.9 258 chr3R 13206659 intergenic not near genes chr3R 13206788 intergenic not near genes chr3R 13206917 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-217 811 chr3R 13505858 13505866 chr3R 13505934 13505942 4 76 8.0 3.5 5.8 0.6 84 chr3R 13505858 intergenic not near genes chr3R 13505900 intergenic not near genes chr3R 13505942 intergenic not near genes chr3R_4_13505001 chr3R_13505001 RAL-217 812 chr3R 13558035 13558037 chr3R 13558121 13558124 4 87 2.5 2.5 2.5 1.1 89 chr3R 13558035 intergenic not near genes chr3R 13558080 intergenic not near genes chr3R 13558124 intergenic not near genes chr3R_4_13555001 chr3R_13555001 RAL-217 813 chr3R 13576548 13576566 chr3R 13576630 13576648 6 82 4.5 2.0 3.2 1.4 100 chr3R 13576548 intergenic not near genes chr3R 13576598 intergenic not near genes chr3R 13576648 intergenic not near genes chr3R_6_13575001 chr3R_13575001 RAL-217 814 chr3R 13693028 13693028 chr3R 21907534 21907535 7 8214507 3.5 21.0 12.2 0.5 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-217 815 chr3R 13830187 13830201 chr3R 13830279 13830291 6 92 2.0 0.5 1.2 2.7 104 chr3R 13830187 intergenic not near genes chr3R 13830239 intergenic not near genes chr3R 13830291 intergenic not near genes chr3R_6_13830001 chr3R_13830001 RAL-217 816 chr3R 13915684 13915715 chr3R 13916026 13916057 9 342 3.5 2.0 2.8 2.4 373 chr3R 13915684 intergenic not near genes chr3R 13915870 intergenic not near genes chr3R 13916057 intergenic not near genes chr3R_9_13915001 chr3R_13915001 RAL-217 817 chr3R 13916312 13916339 chr3R 13916397 13916424 7 83 3.0 3.5 3.2 1.7 112 chr3R 13916312 intergenic not near genes chr3R 13916368 intergenic not near genes chr3R 13916424 intergenic not near genes chr3R_7_13915001 chr3R_13915001 RAL-217 818 chr3R 14246399 14246415 chr3R 14247884 14247903 jockey 5 1491 2.5 2.0 2.2 1.6 1504 chr3R 14246399 intergenic not near genes chr3R 14247151 intergenic not near genes chr3R 14247903 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-217 819 chr3R 14253707 14253720 chr3R 14253785 14253799 4 79 3.0 2.0 2.5 1.1 92 chr3R 14253707 intron Aats-met - chr3R 14253753 intron Aats-met - chr3R 14253799 intron Aats-met - chr3R_4_14250001 chr3R_14250001 RAL-217 820 chr3R 14527405 14527414 chr3R 14527481 14527491 4 77 6.5 3.0 4.8 0.7 86 chr3R 14527405 intron Pde6 - chr3R 14527448 intron Pde6 - chr3R 14527491 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-217 821 chr3R 14548576 14548607 chr3R 14548660 14548663 11 81 2.5 3.0 2.8 2.9 87 chr3R 14548576 intron Pde6 - chr3R 14548620 intron Pde6 - chr3R 14548663 intron Pde6 - chr3R_11_14545001 chr3R_14545001 RAL-217 822 chr3R 14662318 14662333 chr3R 14662399 14662413 4 80 3.0 3.0 3.0 1.0 95 chr3R 14662318 intron Rad17 - chr3R 14662366 intron Rad17 - chr3R 14662413 exon Rad17 - chr3R_4_14660001 chr3R_14660001 RAL-217 823 chr3R 14704398 14704418 chr3R 14704475 14704494 4 77 2.0 2.5 2.2 1.2 96 chr3R 14704398 intron kibra - chr3R 14704446 intron kibra - chr3R 14704494 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-217 824 chr3R 14778485 14778512 chr3R 14778575 14778603 7 89 1.5 0.5 1.0 3.5 118 chr3R 14778485 intron jvl + chr3R 14778544 intron jvl + chr3R 14778603 intron jvl + chr3R_7_14775001 chr3R_14775001 RAL-217 825 chr3R 14862753 14862782 chr3R 14862837 14862858 18 83 2.5 2.0 2.2 5.6 105 chr3R 14862753 intron btsz - chr3R 14862806 intron btsz - chr3R 14862858 intron btsz - chr3R_18_14860001 chr3R_14860001 RAL-217 826 chr3R 14869867 14869894 chr3R 14869957 14869985 11 91 1.5 5.0 3.2 2.6 118 chr3R 14869867 intron btsz - chr3R 14869926 intron btsz - chr3R 14869985 intron btsz - chr3R_11_14865001 chr3R_14865001 RAL-217 827 chr3R 14927243 14927270 chr3R 14927341 14927368 10 98 1.0 1.5 1.2 4.5 125 chr3R 14927243 intergenic not near genes chr3R 14927306 intergenic not near genes chr3R 14927368 intergenic not near genes chr3R_10_14925001 chr3R_14925001 RAL-217 828 chr3R 15026330 15026338 chr3R 15026416 15026424 5 86 4.0 2.5 3.2 1.2 94 chr3R 15026330 intergenic not near genes chr3R 15026377 intergenic not near genes chr3R 15026424 intergenic not near genes chr3R_5_15025001 chr3R_15025001 RAL-217 829 chr3R 15078342 15078372 chr3R 15078422 15078452 6 80 0.0 3.5 1.8 2.1 110 chr3R 15078342 intergenic CG6974 - chr3R 15078397 intergenic CG6974 - chr3R 15078452 intergenic CG6974 - chr3R_6_15075001 chr3R_15075001 RAL-217 830 chr3R 15079814 15079831 chr3R 15080055 15080072 pogo 4 241 0.0 0.0 0.0 4.0 258 chr3R 15079814 3` UTR CG6966 - chr3R 15079943 3` UTR CG6966 - chr3R 15080072 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-217 831 chr3R 15156607 15156628 chr3R 15156688 15156707 5 81 1.5 0.0 0.8 2.8 100 chr3R 15156607 intron Gyc88E + chr3R 15156657 intron Gyc88E + chr3R 15156707 intron Gyc88E + chr3R_5_15155001 chr3R_15155001 RAL-217 832 chr3R 15167808 15167838 chr3R 15167965 15167995 7 157 2.5 1.0 1.8 2.5 187 chr3R 15167808 intron Gyc88E + chr3R 15167902 intron Gyc88E + chr3R 15167995 intron Gyc88E + chr3R_7_15165001 chr3R_15165001 RAL-217 833 chr3R 15286985 15286988 chr3R 21907535 21907536 4 6620549 7.5 21.0 14.2 0.3 6620551 chr3R 15286985 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-217 834 chr3R 15416252 15416281 chr3R 15416331 15416361 4 80 1.5 1.5 1.5 1.6 109 chr3R 15416252 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416361 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-217 835 chr3R 15466895 15466909 chr3R 15467313 15467325 4 418 2.5 0.5 1.5 1.6 430 chr3R 15466895 intron AdamTS-A - chr3R 15467110 intron AdamTS-A - chr3R 15467325 intron AdamTS-A - chr3R_4_15465001 chr3R_15465001 RAL-217 836 chr3R 15517601 15517633 chr3R 15517684 15517716 4 79 2.0 0.5 1.2 1.8 115 chr3R 15517601 intergenic not near genes chr3R 15517658 intergenic not near genes chr3R 15517716 intergenic not near genes chr3R_4_15515001 chr3R_15515001 RAL-217 837 chr3R 15601163 15601191 chr3R 15608685 15608713 412 9 7522 3.5 2.5 3.0 2.2 7550 chr3R 15601163 intergenic not near genes chr3R 15604938 intergenic not near genes chr3R 15608713 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-217 838 chr3R 15715810 15715831 chr3R 15715895 15715913 5 84 2.0 3.0 2.5 1.4 103 chr3R 15715810 exon CG31294 - chr3R 15715862 intron CG31294 - chr3R 15715913 intron CG31294 - chr3R_5_15715001 chr3R_15715001 RAL-217 839 chr3R 15891665 15891684 chr3R 15892057 15892069 7 391 3.0 3.5 3.2 1.7 404 chr3R 15891665 intron CG14877 - chr3R 15891867 intron CG14877 - chr3R 15892069 intron CG14877 - chr3R_7_15890001 chr3R_15890001 RAL-217 840 chr3R 16013145 16013156 chr3R 16013232 16013244 4 87 0.0 2.5 1.2 1.8 99 chr3R 16013145 intron GATAe + chr3R 16013194 intron GATAe + chr3R 16013244 intron GATAe + chr3R_4_16010001 chr3R_16010001 RAL-217 841 chr3R 16472585 16472598 chr3R 16472661 16472674 5 75 7.0 7.0 7.0 0.6 89 chr3R 16472585 intergenic Gyc-89Da + chr3R 16472630 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-217 842 chr3R 16582912 16582918 chr3R 16582991 16582997 4 79 3.0 4.0 3.5 0.9 85 chr3R 16582912 intron Scp2 - chr3R 16582954 intron Scp2 - chr3R 16582997 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-217 843 chr3R 16708922 16708943 chr3R 16709006 16709021 5 83 1.5 0.5 1.0 2.5 99 chr3R 16708922 intron Ubx - chr3R 16708972 intron Ubx - chr3R 16709021 intron Ubx - chr3R_5_16705001 chr3R_16705001 RAL-217 844 chr3R 16732153 16732175 chr3R 16732249 16732271 4 96 0.5 0.5 0.5 2.7 118 chr3R 16732153 intron Ubx - chr3R 16732212 intron Ubx - chr3R 16732271 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-217 845 chr3R 16741590 16741613 chr3R 16741737 16741762 5 148 3.5 2.5 3.0 1.2 172 chr3R 16741590 intergenic not near genes chr3R 16741676 intergenic bxd - chr3R 16741762 intergenic bxd - chr3R_5_16740001 chr3R_16740001 RAL-217 846 chr3R 16756319 16756353 chr3R 16762510 16762543 diver 12 6191 2.0 1.0 1.5 4.8 6224 chr3R 16756319 intron bxd - chr3R 16759431 intron bxd - chr3R 16762543 intron bxd - chr3R_12_16755001 chr3R_16755001 RAL-217 847 chr3R 16875563 16875598 chr3R 16875679 16875689 7 111 1.5 1.0 1.2 3.2 126 chr3R 16875563 intron iab-8 - chr3R 16875626 intron iab-8 - chr3R 16875689 intron iab-8 - chr3R_7_16875001 chr3R_16875001 RAL-217 848 chr3R 17394444 17394456 chr3R 17394608 17394619 5 163 7.0 3.5 5.2 0.8 175 chr3R 17394444 intron CREG - chr3R 17394532 intron CREG - chr3R 17394619 5` UTR CREG - chr3R_5_17390001 chr3R_17390001 RAL-217 849 chr3R 17734127 17734238 chr3R 17734216 17734320 8 88 9.0 1.5 5.2 1.3 193 chr3R 17734127 3` UTR CG14321 + chr3R 17734224 3` UTR CG14321 + chr3R 17734320 3` UTR CG14321 + chr3R_8_17730001 chr3R_17730001 RAL-217 850 chr3R 17923961 17923971 chr3R 17924259 17924267 4 298 4.0 1.5 2.8 1.1 306 chr3R 17923961 intron cpo + chr3R 17924114 intron cpo + chr3R 17924267 intron cpo + chr3R_4_17920001 chr3R_17920001 RAL-217 851 chr3R 17925853 17925871 chr3R 17927320 17927338 hobo 4 1467 5.0 5.0 5.0 0.7 1485 chr3R 17925853 intron cpo + chr3R 17926596 intron cpo + chr3R 17927338 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-217 852 chr3R 18006451 18006463 chr3R 18006538 18006550 5 87 2.0 5.5 3.8 1.0 99 chr3R 18006451 intron cpo + chr3R 18006500 intron cpo + chr3R 18006550 intron cpo + chr3R_5_18005001 chr3R_18005001 RAL-217 853 chr3R 18126215 18126224 chr3R 18126293 18126303 6 78 5.0 3.5 4.2 1.2 88 chr3R 18126215 intron sr + chr3R 18126259 intron sr + chr3R 18126303 intron sr + chr3R_6_18125001 chr3R_18125001 RAL-217 854 chr3R 18528367 18528384 chr3R 18528454 18528470 4 86 1.5 0.0 0.8 2.2 103 chr3R 18528367 intron fru - chr3R 18528418 intron fru - chr3R 18528470 intron fru - chr3R_4_18525001 chr3R_18525001 RAL-217 855 chr3R 18606503 18606532 chr3R 18610734 18610764 F-element 4 4231 2.5 0.0 1.2 1.8 4261 chr3R 18606503 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610764 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-217 856 chr3R 18766785 18766807 chr3R 18766863 18766884 5 78 1.5 2.5 2.0 1.7 99 chr3R 18766785 intron CG7720 - chr3R 18766834 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_5_18765001 chr3R_18765001 RAL-217 857 chr3R 18785864 18785901 chr3R 18785941 18785978 6 77 1.0 1.5 1.2 2.7 114 chr3R 18785864 intron CG7720 - chr3R 18785921 intron CG7720 - chr3R 18785978 intron CG7720 - chr3R_6_18785001 chr3R_18785001 RAL-217 858 chr3R 18791497 18791515 chr3R 18791576 18791591 4 78 3.0 1.5 2.2 1.2 94 chr3R 18791497 intron CG7720 - chr3R 18791544 intron CG7720 - chr3R 18791591 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-217 859 chr3R 18808479 18808508 chr3R 18808555 18808583 6 76 1.5 3.5 2.5 1.7 104 chr3R 18808479 intron CG18208 - chr3R 18808531 intron CG18208 - chr3R 18808583 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-217 860 chr3R 18812083 18812107 chr3R 18812161 18812185 10 77 1.5 4.0 2.8 2.6 102 chr3R 18812083 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-217 861 chr3R 18826715 18826745 chr3R 18826920 18826944 14 204 5.5 2.0 3.8 2.9 229 chr3R 18826715 intron CG18208 - chr3R 18826830 intron CG18208 - chr3R 18826944 intron CG18208 - chr3R_14_18825001 chr3R_18825001 RAL-217 862 chr3R 18878065 18878092 chr3R 18878153 18878180 10 88 6.0 2.0 4.0 2.0 115 chr3R 18878065 intergenic not near genes chr3R 18878122 intergenic not near genes chr3R 18878180 intergenic not near genes chr3R_10_18875001 chr3R_18875001 RAL-217 863 chr3R 18891816 18891842 chr3R 18891896 18891924 5 81 0.0 1.0 0.5 3.3 108 chr3R 18891816 intergenic not near genes chr3R 18891870 intergenic not near genes chr3R 18891924 intergenic not near genes chr3R_5_18890001 chr3R_18890001 RAL-217 864 chr3R 19018506 19018518 chr3R 19018588 19018601 6 81 3.0 2.0 2.5 1.7 95 chr3R 19018506 intron gukh + chr3R 19018554 intron gukh + chr3R 19018601 intron gukh + chr3R_6_19015001 chr3R_19015001 RAL-217 865 chr3R 19018519 19018530 chr3R 19018587 19018611 7 78 1.5 2.0 1.8 2.5 92 chr3R 19018519 intron gukh + chr3R 19018565 intron gukh + chr3R 19018611 intron gukh + chr3R_7_19015001 chr3R_19015001 RAL-217 866 chr3R 19033936 19033956 chr3R 19034012 19034014 8 73 2.0 3.5 2.8 2.1 78 chr3R 19033936 intron CG6026 + chr3R 19033975 intron CG6026 + chr3R 19034014 intron CG6026 + chr3R_8_19030001 chr3R_19030001 RAL-217 867 chr3R 19078117 19078126 chr3R 19078209 19078218 6 91 6.5 2.0 4.2 1.2 101 chr3R 19078117 intron cdi - chr3R 19078168 intron cdi - chr3R 19078218 intron cdi - chr3R_6_19075001 chr3R_19075001 RAL-217 868 chr3R 19140263 19140299 chr3R 19140711 19140747 12 446 3.5 2.5 3.0 3.0 484 chr3R 19140263 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140747 3` UTR Ppcs - chr3R_12_19140001 chr3R_19140001 RAL-217 869 chr3R 19271436 19271443 chr3R 19271521 19271528 4 84 3.5 7.5 5.5 0.6 92 chr3R 19271436 intergenic not near genes chr3R 19271482 intergenic not near genes chr3R 19271528 intergenic not near genes chr3R_4_19270001 chr3R_19270001 RAL-217 870 chr3R 19570308 19570337 chr3R 19570384 19570413 6 75 1.5 2.5 2.0 2.0 105 chr3R 19570308 intron Dys + chr3R 19570360 intron Dys + chr3R 19570413 intron Dys + chr3R_6_19570001 chr3R_19570001 RAL-217 871 chr3R 19702327 19702355 chr3R 19702409 19702434 7 81 1.5 1.5 1.5 2.8 107 chr3R 19702327 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702434 intergenic not near genes chr3R_7_19700001 chr3R_19700001 RAL-217 872 chr3R 19914013 19914043 chr3R 19914106 19914136 4 93 1.5 1.0 1.2 1.8 123 chr3R 19914013 3` UTR RhoGAP92B + chr3R 19914074 3` UTR RhoGAP92B + chr3R 19914136 3` UTR RhoGAP92B + chr3R_4_19910001 chr3R_19910001 RAL-217 873 chr3R 20060633 20060654 chr3R 20060716 20060737 6 83 3.0 2.0 2.5 1.7 104 chr3R 20060633 intergenic not near genes chr3R 20060685 intergenic not near genes chr3R 20060737 intergenic not near genes chr3R_6_20060001 chr3R_20060001 RAL-217 874 chr3R 20205412 20205594 chr3R 20205522 20205716 8 115 1.0 1.0 1.0 4.0 304 chr3R 20205412 intron Nlg4 + chr3R 20205564 intron Nlg4 + chr3R 20205716 intron Nlg4 + chr3R_8_20205001 chr3R_20205001 RAL-217 875 chr3R 20266521 20266539 chr3R 20272992 20273010 Burdock 5 6471 0.0 1.5 0.8 2.8 6489 chr3R 20266521 intron cic + chr3R 20269766 intron cic + chr3R 20273010 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-217 876 chr3R 20278539 20278563 chr3R 20278710 20278734 5 171 0.0 0.5 0.2 4.2 195 chr3R 20278539 intron cic + chr3R 20278636 intron cic + chr3R 20278734 intron cic + chr3R_5_20275001 chr3R_20275001 RAL-217 877 chr3R 20405102 20405131 chr3R 20405455 20405485 6 354 0.5 5.5 3.0 1.5 383 chr3R 20405102 intron Gfrl - chr3R 20405294 intron Gfrl - chr3R 20405485 intron Gfrl - chr3R_6_20405001 chr3R_20405001 RAL-217 878 chr3R 20530040 20530073 chr3R 20530125 20530158 11 81 5.0 6.0 5.5 1.7 118 chr3R 20530040 intergenic not near genes chr3R 20530099 intergenic not near genes chr3R 20530158 intergenic not near genes chr3R_11_20530001 chr3R_20530001 RAL-217 879 chr3R 20602592 20602624 chr3R 20602677 20602709 6 85 0.0 1.5 0.8 3.3 117 chr3R 20602592 intron bon + chr3R 20602650 intron bon + chr3R 20602709 intron bon + chr3R_6_20600001 chr3R_20600001 RAL-217 880 chr3R 20722854 20722886 chr3R 20722981 20723013 11 125 1.5 1.5 1.5 4.4 159 chr3R 20722854 intergenic not near genes chr3R 20722934 intergenic not near genes chr3R 20723013 intergenic not near genes chr3R_11_20720001 chr3R_20720001 RAL-217 881 chr3R 20733760 20733789 chr3R 20733852 20733881 8 92 4.0 2.0 3.0 2.0 121 chr3R 20733760 intergenic not near genes chr3R 20733820 intergenic not near genes chr3R 20733881 intergenic not near genes chr3R_8_20730001 chr3R_20730001 RAL-217 882 chr3R 20764415 20764442 chr3R 20764511 20764538 10 93 4.5 3.5 4.0 2.0 123 chr3R 20764415 intron Syp + chr3R 20764476 intron Syp + chr3R 20764538 intron Syp + chr3R_10_20760001 chr3R_20760001 RAL-217 883 chr3R 20767498 20767539 chr3R 20767592 20767632 8 88 3.5 1.0 2.2 2.5 134 chr3R 20767498 intron Syp + chr3R 20767565 intron Syp + chr3R 20767632 intron Syp + chr3R_8_20765001 chr3R_20765001 RAL-217 884 chr3R 20771708 20771727 chr3R 20771788 20771808 4 81 0.0 2.5 1.2 1.8 100 chr3R 20771708 intron,intron Syp +,Takl1 - chr3R 20771758 intron,intron Syp +,Takl1 - chr3R 20771808 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-217 885 chr3R 20787444 20787452 chr3R 20787535 20787543 4 91 4.5 1.0 2.8 1.1 99 chr3R 20787444 intron Syp + chr3R 20787494 intron Syp + chr3R 20787543 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-217 886 chr3R 20870254 20870280 chr3R 20870339 20870363 12 84 2.5 2.5 2.5 3.4 109 chr3R 20870254 intergenic not near genes chr3R 20870308 intergenic not near genes chr3R 20870363 intergenic not near genes chr3R_12_20870001 chr3R_20870001 RAL-217 887 chr3R 20901656 20901668 chr3R 20901759 20901771 6 103 4.0 1.5 2.8 1.6 115 chr3R 20901656 intergenic CG5621 + chr3R 20901714 intergenic CG5621 + chr3R 20901771 intergenic CG5621 + chr3R_6_20900001 chr3R_20900001 RAL-217 888 chr3R 21141680 21141707 chr3R 21150161 21150186 Tirant 7 8477 3.5 4.0 3.8 1.5 8506 chr3R 21141680 intron SNF4Agamma + chr3R 21145933 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-217 889 chr3R 21252711 21252727 chr3R 21252790 21252822 4 93 1.0 4.0 2.5 1.1 111 chr3R 21252711 intron ETHR + chr3R 21252766 intron ETHR + chr3R 21252822 intron ETHR + chr3R_4_21250001 chr3R_21250001 RAL-217 890 chr3R 21472014 21472024 chr3R 21472094 21472097 5 79 3.0 0.5 1.8 1.8 83 chr3R 21472014 intergenic not near genes chr3R 21472056 intergenic not near genes chr3R 21472097 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-217 891 chr3R 21761117 21761155 chr3R 21768509 21768547 mdg1 22 7386 4.5 4.5 4.5 4.0 7430 chr3R 21761117 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768547 exon CG42335 + chr3R_22_21760001 chr3R_21760001 RAL-217 892 chr3R 21759056 21759081 chr3R 21768569 21768596 mdg1 10 9514 32.0 21.5 26.8 0.4 9540 chr3R 21759056 exon CG42335 + chr3R 21763826 intron CG42335 + chr3R 21768596 exon CG42335 + chr3R_10_21760001 chr3R_21760001 RAL-217 893 chr3R 21784864 21784883 chr3R 21784961 21784981 4 98 1.5 0.0 0.8 2.2 117 chr3R 21784864 3` UTR,3` UTR CASK -,CRG - chr3R 21784922 3` UTR,3` UTR CASK -,CRG - chr3R 21784981 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-217 894 chr3R 8339246 8339247 chr3R 21907534 21907534 10 13568288 13.5 21.0 17.2 0.5 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-217 895 chr3R 9620955 9620959 chr3R 21907534 21907534 7 12286578 8.0 21.0 14.5 0.5 12286579 chr3R 9620955 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-217 896 chr3R 21907534 21907534 chr3R 28831801 28831802 14 6924268 22.0 14.5 18.2 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-217 897 chr3R 8339243 8339247 chr3R 21907535 21907535 15 13568289 13.5 21.0 17.2 0.8 13568292 chr3R 8339243 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_15_15120001 chr3R_15120001 RAL-217 898 chr3R 21907535 21907535 chr3R 28831801 28831802 29 6924266 22.0 14.5 18.2 1.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-217 899 chr3R 8339246 8339247 chr3R 21907536 21907536 4 13568290 13.5 21.5 17.5 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-217 900 chr3R 21907536 21907536 chr3R 28831801 28831802 24 6924266 22.0 14.5 18.2 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_24_25365001 chr3R_25365001 RAL-217 901 chr3R 22222112 22222134 chr3R 22222376 22222398 7 264 1.0 3.0 2.0 2.3 286 chr3R 22222112 intron SKIP + chr3R 22222255 intron SKIP + chr3R 22222398 intron SKIP + chr3R_7_22220001 chr3R_22220001 RAL-217 902 chr3R 22234453 22234486 chr3R 22234540 22234573 7 86 1.0 4.0 2.5 2.0 120 chr3R 22234453 intron SKIP + chr3R 22234513 intron SKIP + chr3R 22234573 intron SKIP + chr3R_7_22230001 chr3R_22230001 RAL-217 903 chr3R 22234689 22234710 chr3R 22236008 22236029 pogo 5 1319 1.5 0.5 1.0 2.5 1340 chr3R 22234689 intron SKIP + chr3R 22235359 intron SKIP + chr3R 22236029 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-217 904 chr3R 22272351 22272372 chr3R 22272433 22272454 4 82 2.5 2.0 2.2 1.2 103 chr3R 22272351 intron SKIP + chr3R 22272402 intron SKIP + chr3R 22272454 intron SKIP + chr3R_4_22270001 chr3R_22270001 RAL-217 905 chr3R 22346181 22346196 chr3R 22346266 22346282 6 86 1.5 1.5 1.5 2.4 101 chr3R 22346181 intergenic not near genes chr3R 22346232 intergenic not near genes chr3R 22346282 intergenic not near genes chr3R_6_22345001 chr3R_22345001 RAL-217 906 chr3R 22428583 22428596 chr3R 22428659 22428672 7 76 2.0 3.0 2.5 2.0 89 chr3R 22428583 intron CG13847 - chr3R 22428628 intron CG13847 - chr3R 22428672 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-217 907 chr3R 22433102 22433104 chr3R 22433196 22433196 4 96 2.5 2.0 2.2 1.2 94 chr3R 22433102 intron CG13847 - chr3R 22433149 intron CG13847 - chr3R 22433196 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-217 908 chr3R 22437803 22437827 chr3R 22437889 22437913 6 86 1.5 3.5 2.5 1.7 110 chr3R 22437803 intergenic not near genes chr3R 22437858 intergenic not near genes chr3R 22437913 intergenic not near genes chr3R_6_22435001 chr3R_22435001 RAL-217 909 chr3R 22450541 22450579 chr3R 22453181 22453219 NOF 6 2639 1.5 2.0 1.8 2.1 2678 chr3R 22450541 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_6_22450001 chr3R_22450001 RAL-217 910 chr3R 22538446 22538473 chr3R 22538531 22538558 7 84 2.5 1.5 2.0 2.3 112 chr3R 22538446 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_7_22535001 chr3R_22535001 RAL-217 911 chr3R 22684211 22684241 chr3R 22684287 22684317 5 76 2.5 4.5 3.5 1.1 106 chr3R 22684211 intergenic not near genes chr3R 22684264 intergenic not near genes chr3R 22684317 intergenic not near genes chr3R_5_22680001 chr3R_22680001 RAL-217 912 chr3R 22769098 22769126 chr3R 22769169 22769203 10 75 1.0 1.0 1.0 5.0 105 chr3R 22769098 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769150 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769203 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_10_22765001 chr3R_22765001 RAL-217 913 chr3R 22779475 22779509 chr3R 22779553 22779587 8 77 1.5 2.5 2.0 2.7 112 chr3R 22779475 intron,3` UTR CG7029 +,CR43654 - chr3R 22779531 intron,3` UTR CG7029 +,CR43654 - chr3R 22779587 intron,3` UTR CG7029 +,CR43654 - chr3R_8_22775001 chr3R_22775001 RAL-217 914 chr3R 22794521 22794551 chr3R 22794595 22794618 8 74 0.5 0.5 0.5 5.3 97 chr3R 22794521 intergenic CG7029 + chr3R 22794570 intergenic not near genes chr3R 22794618 intergenic not near genes chr3R_8_22790001 chr3R_22790001 RAL-217 915 chr3R 22796886 22796912 chr3R 22796979 22796995 6 90 1.5 2.5 2.0 2.0 109 chr3R 22796886 intergenic not near genes chr3R 22796940 intergenic not near genes chr3R 22796995 intergenic not near genes chr3R_6_22795001 chr3R_22795001 RAL-217 916 chr3R 22860157 22860176 chr3R 22860249 22860268 9 92 0.5 0.5 0.5 6.0 111 chr3R 22860157 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860268 intergenic not near genes chr3R_9_22860001 chr3R_22860001 RAL-217 917 chr3R 22877313 22877321 chr3R 22877441 22877449 4 128 2.5 3.0 2.8 1.1 136 chr3R 22877313 intergenic not near genes chr3R 22877381 intergenic not near genes chr3R 22877449 intergenic not near genes chr3R_4_22875001 chr3R_22875001 RAL-217 918 chr3R 22880602 22880614 chr3R 22880679 22880691 7 76 3.5 5.0 4.2 1.3 89 chr3R 22880602 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880691 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-217 919 chr3R 22916255 22916283 chr3R 22916335 22916354 11 80 1.5 3.5 2.5 3.1 99 chr3R 22916255 intron klg + chr3R 22916304 intron klg + chr3R 22916354 intron klg + chr3R_11_22915001 chr3R_22915001 RAL-217 920 chr3R 23101383 23101408 chr3R 23101472 23101487 7 87 3.0 3.0 3.0 1.8 104 chr3R 23101383 intron CG13830 - chr3R 23101435 intron CG13830 - chr3R 23101487 intron CG13830 - chr3R_7_23100001 chr3R_23100001 RAL-217 921 chr3R 23197967 23197980 chr3R 23198046 23198059 4 79 1.5 0.0 0.8 2.2 92 chr3R 23197967 exon cnc - chr3R 23198013 intron cnc - chr3R 23198059 intron cnc - chr3R_4_23195001 chr3R_23195001 RAL-217 922 chr3R 23397098 23397117 chr3R 23397209 23397228 4 111 2.0 2.5 2.2 1.2 130 chr3R 23397098 intergenic not near genes chr3R 23397163 intergenic not near genes chr3R 23397228 intergenic not near genes chr3R_4_23395001 chr3R_23395001 RAL-217 923 chr3R 23469586 23469612 chr3R 23469683 23469709 8 96 2.0 2.0 2.0 2.7 123 chr3R 23469586 intron CG4374 - chr3R 23469648 intron CG4374 - chr3R 23469709 intron CG4374 - chr3R_8_23465001 chr3R_23465001 RAL-217 924 chr3R 23574412 23574430 chr3R 23574951 23574968 6 539 0.5 1.5 1.0 3.0 556 chr3R 23574412 exon beat-IV + chr3R 23574690 intron beat-IV + chr3R 23574968 intron beat-IV + chr3R_6_23570001 chr3R_23570001 RAL-217 925 chr3R 23684699 23684713 chr3R 23685185 23685197 roo 6 484 4.0 7.0 5.5 0.9 498 chr3R 23684699 exon CG18754 + chr3R 23684948 intron CG18754 + chr3R 23685197 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-217 926 chr3R 23684714 23684726 chr3R 23685184 23685191 roo 8 475 3.5 7.0 5.2 1.3 477 chr3R 23684714 intron CG18754 + chr3R 23684952 intron CG18754 + chr3R 23685191 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-217 927 chr3R 23808478 23808499 chr3R 23808603 23808623 7 125 2.0 4.0 3.0 1.8 145 chr3R 23808478 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808550 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808623 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_7_23805001 chr3R_23805001 RAL-217 928 chr3R 23820635 23820668 chr3R 23820719 23820751 7 83 1.5 1.5 1.5 2.8 116 chr3R 23820635 5` UTR CG34355 + chr3R 23820693 5` UTR CG34355 + chr3R 23820751 5` UTR CG34355 + chr3R_7_23820001 chr3R_23820001 RAL-217 929 chr3R 23944913 23944936 chr3R 23944998 23945021 7 85 2.0 6.0 4.0 1.4 108 chr3R 23944913 intron CG12268 - chr3R 23944967 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-217 930 chr3R 24072086 24072102 chr3R 24072524 24072526 jockey 7 434 5.0 0.0 2.5 2.0 440 chr3R 24072086 intron 4EHP - chr3R 24072306 intron 4EHP - chr3R 24072526 intron 4EHP - chr3R_7_24070001 chr3R_24070001 RAL-217 931 chr3R 24076917 24076947 chr3R 24078384 24078414 hobo 8 1467 3.5 2.5 3.0 2.0 1497 chr3R 24076917 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-217 932 chr3R 24194924 24194949 chr3R 24195008 24195033 7 83 1.5 0.0 0.8 3.9 109 chr3R 24194924 exon CG6204 + chr3R 24194978 exon CG6204 + chr3R 24195033 exon CG6204 + chr3R_7_24190001 chr3R_24190001 RAL-217 933 chr3R 24207212 24207240 chr3R 24212288 24212316 flea 6 5076 7.0 3.5 5.2 1.0 5104 chr3R 24207212 intron twin - chr3R 24209764 intron twin - chr3R 24212316 intron twin - chr3R_6_24205001 chr3R_24205001 RAL-217 934 chr3R 21907534 21907535 chr3R 24389465 24389465 7 2481930 22.0 5.0 13.5 0.5 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_7_23145001 chr3R_23145001 RAL-217 935 chr3R 24441630 24441644 chr3R 24441911 24441926 4 282 0.0 1.0 0.5 2.7 296 chr3R 24441630 intron nAChRalpha1 - chr3R 24441778 intron nAChRalpha1 - chr3R 24441926 intron nAChRalpha1 - chr3R_4_24440001 chr3R_24440001 RAL-217 936 chr3R 24730090 24730121 chr3R 24732467 24732486 Doc 9 2372 1.0 0.0 0.5 6.0 2396 chr3R 24730090 intron tok + chr3R 24731288 intron tok + chr3R 24732486 intron tok + chr3R_9_24730001 chr3R_24730001 RAL-217 937 chr3R 24809474 24809500 chr3R 24809562 24809588 7 88 2.0 0.0 1.0 3.5 114 chr3R 24809474 exon CG5807 - chr3R 24809531 intron CG5807 - chr3R 24809588 intron CG5807 - chr3R_7_24805001 chr3R_24805001 RAL-217 938 chr3R 24845998 24846022 chr3R 24846087 24846111 5 88 4.5 6.0 5.2 0.8 113 chr3R 24845998 intron Esp + chr3R 24846054 intron Esp + chr3R 24846111 intron Esp + chr3R_5_24845001 chr3R_24845001 RAL-217 939 chr3R 24927126 24927146 chr3R 24931917 24931937 Doc 4 4791 2.5 3.0 2.8 1.1 4811 chr3R 24927126 intergenic Trf4-2 + chr3R 24929532 intergenic not near genes chr3R 24931937 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-217 940 chr3R 25004906 25004916 chr3R 25004989 25004999 7 83 2.5 3.5 3.0 1.8 93 chr3R 25004906 intron tnc + chr3R 25004952 intron tnc + chr3R 25004999 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-217 941 chr3R 25203355 25203378 chr3R 25203485 25203508 6 130 1.0 1.5 1.2 2.7 153 chr3R 25203355 intron,intron Cad96Ca -,CG13654 + chr3R 25203432 intron,intron Cad96Ca -,CG13654 + chr3R 25203508 intron,intron Cad96Ca -,CG13654 + chr3R_6_25200001 chr3R_25200001 RAL-217 942 chr3R 25272109 25272121 chr3R 25272171 25272176 6 72 0.5 2.0 1.2 2.7 67 chr3R 25272109 3` UTR,exon CG11889 +,CG11891 + chr3R 25272142 3` UTR,exon CG11889 +,CG11891 + chr3R 25272176 3` UTR,exon CG11889 +,CG11891 + chr3R_6_25270001 chr3R_25270001 RAL-217 943 chr3R 25425556 25425568 chr3R 25425673 25425687 4 118 1.5 2.0 1.8 1.4 131 chr3R 25425556 intron Fur1 - chr3R 25425622 intron Fur1 - chr3R 25425687 intron Fur1 - chr3R_4_25425001 chr3R_25425001 RAL-217 944 chr3R 25461405 25461436 chr3R 25461999 25462030 6 594 0.5 0.5 0.5 4.0 625 chr3R 25461405 intron Fur1 - chr3R 25461718 intron Fur1 - chr3R 25462030 intron Fur1 - chr3R_6_25460001 chr3R_25460001 RAL-217 945 chr3R 25464497 25464522 chr3R 25464814 25464839 6 317 2.0 0.5 1.2 2.7 342 chr3R 25464497 intron Fur1 - chr3R 25464668 intron Fur1 - chr3R 25464839 intron Fur1 - chr3R_6_25460001 chr3R_25460001 RAL-217 946 chr3R 25588070 25588102 chr3R 25588148 25588180 7 77 0.0 1.5 0.8 3.9 110 chr3R 25588070 intron msi + chr3R 25588125 intron msi + chr3R 25588180 intron msi + chr3R_7_25585001 chr3R_25585001 RAL-217 947 chr3R 25689126 25689162 chr3R 25689234 25689270 10 108 2.0 3.0 2.5 2.9 144 chr3R 25689126 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689270 intergenic not near genes chr3R_10_25685001 chr3R_25685001 RAL-217 948 chr3R 25738632 25738660 chr3R 25738720 25738747 4 88 5.0 0.5 2.8 1.1 115 chr3R 25738632 intron LpR2 - chr3R 25738690 intron LpR2 - chr3R 25738747 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-217 949 chr3R 25743668 25743692 chr3R 25743883 25743907 8 215 3.5 2.0 2.8 2.1 239 chr3R 25743668 intron LpR1 - chr3R 25743788 intron LpR1 - chr3R 25743907 intron LpR1 - chr3R_8_25740001 chr3R_25740001 RAL-217 950 chr3R 25789526 25789553 chr3R 25789608 25789636 5 78 1.0 0.0 0.5 3.3 110 chr3R 25789526 intergenic CG31380 -,CG31093 - chr3R 25789581 intergenic CG31380 -,CG31093 - chr3R 25789636 intergenic CG31380 -,CG31093 - chr3R_5_25785001 chr3R_25785001 RAL-217 951 chr3R 25796379 25796398 chr3R 25796458 25796477 4 79 5.0 0.0 2.5 1.1 98 chr3R 25796379 intergenic CR43847 - chr3R 25796428 intergenic CR43847 - chr3R 25796477 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-217 952 chr3R 25814042 25814073 chr3R 25814122 25814155 10 80 2.0 4.0 3.0 2.5 113 chr3R 25814042 intergenic not near genes chr3R 25814098 intergenic not near genes chr3R 25814155 intergenic not near genes chr3R_10_25810001 chr3R_25810001 RAL-217 953 chr3R 25832692 25832719 chr3R 25841874 25841901 roo 8 9182 1.5 4.0 2.8 2.1 9209 chr3R 25832692 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-217 954 chr3R 25864841 25864872 chr3R 25865099 25865130 13 258 2.5 1.0 1.8 4.6 289 chr3R 25864841 intron CG5890 + chr3R 25864986 intron CG5890 + chr3R 25865130 intron CG5890 + chr3R_13_25860001 chr3R_25860001 RAL-217 955 chr3R 26093848 26093875 chr3R 26093926 26093953 8 78 2.5 2.0 2.2 2.5 105 chr3R 26093848 intron dys - chr3R 26093900 intron dys - chr3R 26093953 intron dys - chr3R_8_26090001 chr3R_26090001 RAL-217 956 chr3R 26104081 26104090 chr3R 26105160 26105169 5 1079 12.0 5.0 8.5 0.5 1088 chr3R 26104081 intergenic not near genes chr3R 26104625 intergenic not near genes chr3R 26105169 intergenic not near genes chr3R_5_26100001 chr3R_26100001 RAL-217 957 chr3R 26235488 26235520 chr3R 26235570 26235601 8 81 2.5 7.0 4.8 1.4 113 chr3R 26235488 5` UTR CR42745 + chr3R 26235544 5` UTR CR42745 + chr3R 26235601 5` UTR CR42745 + chr3R_8_26235001 chr3R_26235001 RAL-217 958 chr3R 26245037 26245057 chr3R 26245236 26245256 4 199 3.5 3.0 3.2 1.0 219 chr3R 26245037 intron CR42745 + chr3R 26245146 intron CR42745 + chr3R 26245256 intron CR42745 + chr3R_4_26245001 chr3R_26245001 RAL-217 959 chr3R 26265818 26265843 chr3R 26265904 26265930 8 87 3.5 3.5 3.5 1.8 112 chr3R 26265818 intron CG6154 + chr3R 26265874 intron CG6154 + chr3R 26265930 intron CG6154 + chr3R_8_26265001 chr3R_26265001 RAL-217 960 chr3R 26292113 26292140 chr3R 26292193 26292217 5 79 0.0 1.0 0.5 3.3 104 chr3R 26292113 intergenic not near genes chr3R 26292165 intergenic not near genes chr3R 26292217 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-217 961 chr3R 26376328 26376357 chr3R 26385488 26385517 roo 8 9160 1.5 0.0 0.8 4.4 9189 chr3R 26376328 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-217 962 chr3R 26529349 26529369 chr3R 26529431 26529452 4 83 3.0 0.0 1.5 1.6 103 chr3R 26529349 intron plum - chr3R 26529400 intron plum - chr3R 26529452 intron plum - chr3R_4_26525001 chr3R_26525001 RAL-217 963 chr3R 26545417 26545429 chr3R 26545545 26545557 4 128 0.0 4.0 2.0 1.3 140 chr3R 26545417 intron scrib + chr3R 26545487 intron scrib + chr3R 26545557 intron scrib + chr3R_4_26545001 chr3R_26545001 RAL-217 964 chr3R 26558333 26558360 chr3R 26565645 26565672 Stalker4 9 7311 0.5 2.5 1.5 3.6 7339 chr3R 26558333 intron scrib + chr3R 26562002 intron scrib + chr3R 26565672 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-217 965 chr3R 26641643 26641662 chr3R 26641724 26641749 4 85 2.0 4.0 3.0 1.0 106 chr3R 26641643 intergenic not near genes chr3R 26641696 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-217 966 chr3R 26660645 26660679 chr3R 26660729 26660763 15 82 2.0 6.0 4.0 3.0 118 chr3R 26660645 intron beat-VII - chr3R 26660704 intron beat-VII - chr3R 26660763 intron beat-VII - chr3R_15_26660001 chr3R_26660001 RAL-217 967 chr3R 26806136 26806172 chr3R 26806240 26806276 15 104 2.0 2.5 2.2 4.7 140 chr3R 26806136 intron Tl + chr3R 26806206 intron Tl + chr3R 26806276 intron Tl + chr3R_15_26805001 chr3R_26805001 RAL-217 968 chr3R 27140513 27140545 chr3R 27148123 27148155 412 9 7610 3.0 1.0 2.0 3.0 7642 chr3R 27140513 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148155 intron CG6051 - chr3R_9_27140001 chr3R_27140001 RAL-217 969 chr3R 27227586 27227597 chr3R 27227664 27227668 4 76 7.0 7.5 7.2 0.5 82 chr3R 27227586 3` UTR CG42813 - chr3R 27227627 3` UTR CG42813 - chr3R 27227668 3` UTR CG42813 - chr3R_4_27225001 chr3R_27225001 RAL-217 970 chr3R 27377483 27377503 chr3R 27377561 27377566 10 82 2.5 2.5 2.5 2.9 83 chr3R 27377483 3` UTR side - chr3R 27377524 3` UTR side - chr3R 27377566 3` UTR side - chr3R_10_27375001 chr3R_27375001 RAL-217 971 chr3R 27445250 27445276 chr3R 27445325 27445353 8 74 2.5 2.5 2.5 2.3 103 chr3R 27445250 intergenic not near genes chr3R 27445302 intergenic not near genes chr3R 27445353 intergenic not near genes chr3R_8_27445001 chr3R_27445001 RAL-217 972 chr3R 27496592 27496627 chr3R 27496697 27496732 6 104 1.0 2.0 1.5 2.4 140 chr3R 27496592 intergenic not near genes chr3R 27496662 intergenic not near genes chr3R 27496732 intergenic not near genes chr3R_6_27495001 chr3R_27495001 RAL-217 973 chr3R 27648588 27648866 chr3R 27648671 27648937 16 78 4.0 0.0 2.0 5.3 349 chr3R 27648588 intron tau - chr3R 27648762 intron tau - chr3R 27648937 intron tau - chr3R_16_27645001 chr3R_27645001 RAL-217 974 chr3R 27731205 27731230 chr3R 27731277 27731306 11 79 2.5 7.0 4.8 1.9 101 chr3R 27731205 intergenic not near genes chr3R 27731256 intergenic not near genes chr3R 27731306 intergenic not near genes chr3R_11_27730001 chr3R_27730001 RAL-217 975 chr3R 27779277 27779287 chr3R 27779357 27779367 5 79 1.5 6.5 4.0 1.0 90 chr3R 27779277 exon CG34353 - chr3R 27779322 intron CG34353 - chr3R 27779367 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-217 976 chr3R 27840244 27840257 chr3R 27840366 27840377 4 121 1.0 0.0 0.5 2.7 133 chr3R 27840244 intron CG34353 - chr3R 27840310 intron CG34353 - chr3R 27840377 intron CG34353 - chr3R_4_27840001 chr3R_27840001 RAL-217 977 chr3R 27852364 27852388 chr3R 27853473 27853497 6 1109 21.0 22.5 21.8 0.3 1133 chr3R 27852364 intron CG34353 - chr3R 27852930 intron CG34353 - chr3R 27853497 intron CG34353 - chr3R_6_27850001 chr3R_27850001 RAL-217 978 chr3R 27856759 27856792 chr3R 27858242 27858275 hopper2 7 1481 1.0 3.0 2.0 2.3 1516 chr3R 27856759 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858275 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-217 979 chr3R 27953361 27953391 chr3R 27953493 27953523 18 131 4.0 2.5 3.2 4.3 162 chr3R 27953361 intron CG4951 - chr3R 27953442 intron CG4951 - chr3R 27953523 exon CG4951 - chr3R_18_27950001 chr3R_27950001 RAL-217 980 chr3R 28103323 28103350 chr3R 28103416 28103443 12 92 3.5 2.0 2.8 3.2 120 chr3R 28103323 intergenic not near genes chr3R 28103383 intergenic not near genes chr3R 28103443 intergenic not near genes chr3R_12_28100001 chr3R_28100001 RAL-217 981 chr3R 28129358 28129383 chr3R 28129455 28129478 5 95 0.0 4.0 2.0 1.7 120 chr3R 28129358 intergenic not near genes chr3R 28129418 intergenic not near genes chr3R 28129478 intergenic not near genes chr3R_5_28125001 chr3R_28125001 RAL-217 982 chr3R 28137685 28137716 chr3R 28137765 28137796 10 80 1.0 0.5 0.8 5.6 111 chr3R 28137685 intergenic not near genes chr3R 28137740 intergenic not near genes chr3R 28137796 intergenic not near genes chr3R_10_28135001 chr3R_28135001 RAL-217 983 chr3R 28223757 28223772 chr3R 28223847 28223862 6 90 2.0 0.5 1.2 2.7 105 chr3R 28223757 intron CG34354 + chr3R 28223810 intron CG34354 + chr3R 28223862 intron CG34354 + chr3R_6_28220001 chr3R_28220001 RAL-217 984 chr3R 28253350 28253367 chr3R 28255860 28255877 jockey 5 2510 3.0 3.0 3.0 1.2 2527 chr3R 28253350 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255877 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-217 985 chr3R 28297289 28297300 chr3R 28298866 28298877 4 1577 2.5 1.5 2.0 1.3 1588 chr3R 28297289 intergenic not near genes chr3R 28298083 intergenic not near genes chr3R 28298877 intergenic not near genes chr3R_4_28295001 chr3R_28295001 RAL-217 986 chr3R 28390113 28390143 chr3R 28390189 28390220 5 76 3.0 2.0 2.5 1.4 107 chr3R 28390113 intergenic not near genes chr3R 28390166 intergenic not near genes chr3R 28390220 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-217 987 chr3R 28412521 28412540 chr3R 28412603 28412615 8 80 2.0 7.5 4.8 1.4 94 chr3R 28412521 intergenic not near genes chr3R 28412568 intergenic not near genes chr3R 28412615 intergenic not near genes chr3R_8_28410001 chr3R_28410001 RAL-217 988 chr3R 28484354 28484372 chr3R 28486271 28486289 25 1917 20.5 48.0 34.2 0.7 1935 chr3R 28484354 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486289 intergenic CG1894 + chr3R_25_28485001 chr3R_28485001 RAL-217 989 chr3R 28546964 28546990 chr3R 28547070 28547096 10 106 2.0 3.5 2.8 2.6 132 chr3R 28546964 intergenic not near genes chr3R 28547030 intergenic not near genes chr3R 28547096 intergenic not near genes chr3R_10_28545001 chr3R_28545001 RAL-217 990 chr3R 28662368 28662397 chr3R 28662523 28662552 11 155 2.5 1.0 1.8 3.9 184 chr3R 28662368 intergenic not near genes chr3R 28662460 intergenic not near genes chr3R 28662552 intergenic not near genes chr3R_11_28660001 chr3R_28660001 RAL-217 991 chr3R 28667506 28667537 chr3R 28667619 28667649 6 111 5.0 1.0 3.0 1.5 143 chr3R 28667506 intergenic not near genes chr3R 28667578 intergenic not near genes chr3R 28667649 intergenic not near genes chr3R_6_28665001 chr3R_28665001 RAL-217 992 chr3R 28687098 28687120 chr3R 28687176 28687199 6 78 2.0 2.5 2.2 1.9 101 chr3R 28687098 intron CG9990 + chr3R 28687148 intron CG9990 + chr3R 28687199 intron CG9990 + chr3R_6_28685001 chr3R_28685001 RAL-217 993 chr3R 21907534 21907536 chr3R 28831799 28831802 68 6924266 22.0 14.5 18.2 3.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-217 994 chr3R 29237247 29237282 chr3R 29239268 29239303 6 2021 14.0 1.5 7.8 0.7 2056 chr3R 29237247 exon CG11951 - chr3R 29238275 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-217 995 chr3R 29239226 29239248 chr3R 29245517 29245539 7 6291 2.0 21.5 11.8 0.5 6313 chr3R 29239226 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245539 exon SP1029 - chr3R_7_29240001 chr3R_29240001 RAL-217 996 chr3R 29243620 29243624 chr3R 29248221 29248226 4 4602 18.5 10.0 14.2 0.3 4606 chr3R 29243620 exon CG31445 - chr3R 29245923 intron SP1029 - chr3R 29248226 exon SP1029 - chr3R_4_29245001 chr3R_29245001 RAL-217 997 chr3R 29332293 29332307 chr3R 29332370 29332384 5 76 0.0 1.0 0.5 3.3 91 chr3R 29332293 intergenic not near genes chr3R 29332338 intergenic not near genes chr3R 29332384 intergenic not near genes chr3R_5_29330001 chr3R_29330001 RAL-217 998 chr3R 29406616 29406641 chr3R 29407901 29407927 jockey 11 1284 5.0 3.5 4.2 2.1 1311 chr3R 29406616 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407927 intron Ptp99A + chr3R_11_29405001 chr3R_29405001 RAL-217 999 chr3R 29429789 29429805 chr3R 29429865 29429883 5 75 3.0 1.0 2.0 1.7 94 chr3R 29429789 intron Ptp99A + chr3R 29429836 intron Ptp99A + chr3R 29429883 intron Ptp99A + chr3R_5_29425001 chr3R_29425001 RAL-217 1000 chr3R 29464426 29464444 chr3R 29464762 29464781 4 334 2.5 2.0 2.2 1.2 355 chr3R 29464426 intron Ptp99A + chr3R 29464604 intron Ptp99A + chr3R 29464781 intron Ptp99A + chr3R_4_29460001 chr3R_29460001 RAL-217 1001 chr3R 29472026 29472030 chr3R 29472107 29472123 4 89 3.0 2.5 2.8 1.1 97 chr3R 29472026 intron Ptp99A + chr3R 29472074 intron Ptp99A + chr3R 29472123 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-217 1002 chr3R 29604103 29604137 chr3R 29604182 29604216 6 78 1.5 0.0 0.8 3.3 113 chr3R 29604103 intron alph + chr3R 29604160 intron alph + chr3R 29604216 intron alph + chr3R_6_29600001 chr3R_29600001 RAL-217 1003 chr3R 29655653 29655685 chr3R 29655732 29655764 4 79 1.0 0.5 0.8 2.2 111 chr3R 29655653 intron Dop1R2 - chr3R 29655708 intron Dop1R2 - chr3R 29655764 intron Dop1R2 - chr3R_4_29655001 chr3R_29655001 RAL-217 1004 chr3R 29738262 29738300 chr3R 29739729 29739767 hobo 6 1467 2.5 1.5 2.0 2.0 1505 chr3R 29738262 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739767 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-217 1005 chr3R 29826720 29826750 chr3R 29826814 29826844 10 94 4.5 4.0 4.2 1.9 124 chr3R 29826720 intergenic not near genes chr3R 29826782 intergenic Atg16 - chr3R 29826844 intergenic Atg16 - chr3R_10_29825001 chr3R_29825001 RAL-217 1006 chr3R 29831809 29831843 chr3R 29831894 29831928 16 84 3.0 4.0 3.5 3.6 119 chr3R 29831809 exon Atg16 - chr3R 29831868 intron Atg16 - chr3R 29831928 exon Atg16 - chr3R_16_29830001 chr3R_29830001 RAL-217 1007 chr3R 29905091 29905098 chr3R 29905171 29905178 4 80 2.5 2.5 2.5 1.1 87 chr3R 29905091 intergenic CG15515 + chr3R 29905134 intergenic CG15515 + chr3R 29905178 intergenic CG15515 + chr3R_4_29905001 chr3R_29905001 RAL-217 1008 chr3R 30001742 30001760 chr3R 30001806 30001836 5 72 4.0 3.0 3.5 1.1 94 chr3R 30001742 intron Tace + chr3R 30001789 intron Tace + chr3R 30001836 intron Tace + chr3R_5_30000001 chr3R_30000001 RAL-217 1009 chr3R 30032162 30032181 chr3R 30032241 30032259 4 79 1.5 1.0 1.2 1.8 97 chr3R 30032162 intron Axn + chr3R 30032210 intron Axn + chr3R 30032259 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-217 1010 chr3R 30084852 30084871 chr3R 30086319 30086337 hobo 9 1467 7.0 1.0 4.0 1.8 1485 chr3R 30084852 intron sima + chr3R 30085594 intron sima + chr3R 30086337 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-217 1011 chr3R 30097499 30097646 chr3R 30097580 30097785 7 114 1.5 1.0 1.2 3.2 286 chr3R 30097499 intron sima + chr3R 30097642 intron sima + chr3R 30097785 intron sima + chr3R_7_30095001 chr3R_30095001 RAL-217 1012 chr3R 30177748 30177775 chr3R 30177865 30177892 6 117 0.5 2.0 1.2 2.7 144 chr3R 30177748 intergenic CG1983 -,CG15530 + chr3R 30177820 intergenic CG15530 +,CG1983 - chr3R 30177892 5` UTR CG15530 + chr3R_6_30175001 chr3R_30175001 RAL-217 1013 chr3R 30268248 30268448 chr3R 30268324 30268529 21 79 2.0 1.0 1.5 8.4 281 chr3R 30268248 intergenic not near genes chr3R 30268388 intergenic not near genes chr3R 30268529 intergenic not near genes chr3R_21_30265001 chr3R_30265001 RAL-217 1014 chr3R 30332029 30332060 chr3R 30332108 30332139 9 79 2.0 1.5 1.8 3.2 110 chr3R 30332029 intron hdc + chr3R 30332084 intron hdc + chr3R 30332139 intron hdc + chr3R_9_30330001 chr3R_30330001 RAL-217 1015 chr3R 30458017 30458034 chr3R 30458097 30458114 4 80 0.0 0.5 0.2 3.3 97 chr3R 30458017 intron CG2224 - chr3R 30458066 intron CG2224 - chr3R 30458114 intron CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-217 1016 chr3R 30480472 30480505 chr3R 30482940 30482970 jockey 7 2466 3.5 2.5 3.0 1.8 2498 chr3R 30480472 intron PH4alphaEFB + chr3R 30481721 intron PH4alphaEFB + chr3R 30482970 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-217 1017 chr3R 30549013 30549033 chr3R 30549105 30549125 4 92 1.5 1.0 1.2 1.8 112 chr3R 30549013 intron tmod + chr3R 30549069 intron tmod + chr3R 30549125 intron tmod + chr3R_4_30545001 chr3R_30545001 RAL-217 1018 chr3R 30627601 30627638 chr3R 30627681 30627718 15 78 2.5 3.5 3.0 3.8 117 chr3R 30627601 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_15_30625001 chr3R_30625001 RAL-217 1019 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 7 7469 2.5 2.5 2.5 2.0 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_7_30680001 chr3R_30680001 RAL-217 1020 chr3R 30818823 30818831 chr3R 30820388 30820396 1360 4 1565 1.5 3.0 2.2 1.2 1573 chr3R 30818823 intron cindr + chr3R 30819610 intron cindr + chr3R 30820396 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-217 1021 chr3R 31018288 31018314 chr3R 31018375 31018401 4 87 0.5 2.5 1.5 1.6 113 chr3R 31018288 intergenic not near genes chr3R 31018344 intergenic not near genes chr3R 31018401 intergenic not near genes chr3R_4_31015001 chr3R_31015001 RAL-217 1022 chr3R 31031597 31031615 chr3R 31031725 31031743 4 128 3.0 1.5 2.2 1.2 146 chr3R 31031597 intergenic not near genes chr3R 31031670 intergenic not near genes chr3R 31031743 intergenic not near genes chr3R_4_31030001 chr3R_31030001 RAL-217 1023 chr3R 31074229 31074248 chr3R 31081829 31081848 springer 4 7600 6.0 3.5 4.8 0.7 7619 chr3R 31074229 intron Sox100B + chr3R 31078038 intron Sox100B + chr3R 31081848 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-217 1024 chr3R 31150271 31150289 chr3R 31150351 31150369 8 78 4.0 3.0 3.5 1.8 98 chr3R 31150271 intron Gycbeta100B + chr3R 31150320 intron Gycbeta100B + chr3R 31150369 intron Gycbeta100B + chr3R_8_31150001 chr3R_31150001 RAL-217 1025 chr3R 31172236 31172267 chr3R 31172317 31172348 5 81 0.5 4.5 2.5 1.4 112 chr3R 31172236 intron Gycbeta100B + chr3R 31172292 intron Gycbeta100B + chr3R 31172348 intron Gycbeta100B + chr3R_5_31170001 chr3R_31170001 RAL-217 1026 chr3R 31260246 31260271 chr3R 31260323 31260348 11 77 3.5 2.5 3.0 2.8 102 chr3R 31260246 5` UTR CG18672 + chr3R 31260297 5` UTR CG18672 + chr3R 31260348 5` UTR CG18672 + chr3R_11_31260001 chr3R_31260001 RAL-217 1027 chr3R 31279378 31279408 chr3R 31285569 31285579 diver 8 6186 2.5 4.0 3.2 1.9 6201 chr3R 31279378 intergenic not near genes chr3R 31282478 intergenic not near genes chr3R 31285579 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-217 1028 chr3R 31302606 31302624 chr3R 31302667 31302701 10 72 1.5 5.0 3.2 2.4 95 chr3R 31302606 3` UTR CG11340 - chr3R 31302654 3` UTR CG11340 - chr3R 31302701 3` UTR CG11340 - chr3R_10_31300001 chr3R_31300001 RAL-217 1029 chr3R 31413089 31413121 chr3R 31418289 31418319 copia 4 5200 3.5 2.0 2.8 1.1 5230 chr3R 31413089 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-217 1030 chr3R 31422544 31422558 chr3R 31422634 31422649 7 91 2.0 0.5 1.2 3.2 105 chr3R 31422544 intron Gprk2 + chr3R 31422596 intron Gprk2 + chr3R 31422649 intron Gprk2 + chr3R_7_31420001 chr3R_31420001 RAL-217 1031 chr3R 31442271 31442295 chr3R 31442356 31442380 13 84 1.0 3.0 2.0 4.3 109 chr3R 31442271 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442380 intron Gprk2 + chr3R_13_31440001 chr3R_31440001 RAL-217 1032 chr3R 31448606 31448626 chr3R 31448680 31448702 5 75 7.0 1.5 4.2 1.0 96 chr3R 31448606 intron Gprk2 + chr3R 31448654 intron Gprk2 + chr3R 31448702 intron Gprk2 + chr3R_5_31445001 chr3R_31445001 RAL-217 1033 chr3R 31539872 31539885 chr3R 31539957 31539970 4 85 1.5 4.0 2.8 1.1 98 chr3R 31539872 intergenic not near genes chr3R 31539921 intergenic not near genes chr3R 31539970 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-217 1034 chr3R 31691530 31691561 chr3R 31696296 31696325 Doc 12 4759 3.5 5.0 4.2 2.3 4795 chr3R 31691530 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696325 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-217 1035 chr3R 31820555 31820564 chr3R 31820633 31820640 7 77 7.5 2.5 5.0 1.2 85 chr3R 31820555 intron RhoGAP100F + chr3R 31820598 intron RhoGAP100F + chr3R 31820640 intron RhoGAP100F + chr3R_7_31820001 chr3R_31820001 RAL-217 1036 chr3R 31820565 31820586 chr3R 31820632 31820664 9 70 4.5 2.5 3.5 2.0 99 chr3R 31820565 intron RhoGAP100F + chr3R 31820614 intron RhoGAP100F + chr3R 31820664 intron RhoGAP100F + chr3R_9_31820001 chr3R_31820001 RAL-217 1037 chr3R 31961338 31961368 chr3R 31961421 31961423 10 76 2.0 1.0 1.5 4.0 85 chr3R 31961338 intron heph - chr3R 31961380 intron heph - chr3R 31961423 intron heph - chr3R_10_31960001 chr3R_31960001 RAL-217 1038 chr3R 32014842 32014872 chr3R 32015116 32015146 10 274 1.5 2.5 2.0 3.3 304 chr3R 32014842 5` UTR heph - chr3R 32014994 5` UTR heph - chr3R 32015146 5` UTR heph - chr3R_10_32010001 chr3R_32010001 RAL-217 1039 chr4 671608 671618 chr4 680191 680199 Tirant 7 8582 1.5 1.5 1.5 2.8 8591 chr4 671608 intron CG11360 + chr4 675904 intron CG11360 + chr4 680199 intron CG11360 + chr4_7_675001 chr4_675001 RAL-217 1040 chrX 494602 494620 chrX 494694 494712 4 92 1.0 1.5 1.2 1.8 110 chrX 494602 intergenic CG17778 + chrX 494657 5` UTR CG17778 + chrX 494712 5` UTR CG17778 + chrX_4_490001 chrX_490001 RAL-217 1041 chrX 551420 551453 chrX 558982 559015 412 10 7559 4.0 1.0 2.5 2.9 7595 chrX 551420 intron Appl + chrX 555218 intron Appl + chrX 559015 intron Appl + chrX_10_555001 chrX_555001 RAL-217 1042 chrX 569342 569376 chrX 569457 569491 16 113 4.5 2.0 3.2 3.8 149 chrX 569342 intron Appl + chrX 569416 intron Appl + chrX 569491 intron Appl + chrX_16_565001 chrX_565001 RAL-217 1043 chrX 778127 778160 chrX 778217 778250 10 90 5.0 0.5 2.8 2.6 123 chrX 778127 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_10_775001 chrX_775001 RAL-217 1044 chrX 802304 802318 chrX 802381 802386 6 74 1.5 2.5 2.0 2.0 82 chrX 802304 exon CG13359 - chrX 802345 exon CG13359 - chrX 802386 exon CG13359 - chrX_6_800001 chrX_800001 RAL-217 1045 chrX 827602 827631 chrX 835394 835423 roo 7 7792 2.0 1.0 1.5 2.8 7821 chrX 827602 intron CG43867 - chrX 831512 intron CG43867 - chrX 835423 intron CG43867 - chrX_7_830001 chrX_830001 RAL-217 1046 chrX 906709 906734 chrX 908494 908517 S-element 12 1787 2.0 1.5 1.8 4.3 1808 chrX 906709 intron CG43867 - chrX 907613 intron CG43867 - chrX 908517 intron CG43867 - chrX_12_905001 chrX_905001 RAL-217 1047 chrX 962007 962033 chrX 962473 962498 9 466 2.0 1.0 1.5 3.6 491 chrX 962007 intergenic not near genes chrX 962252 intergenic not near genes chrX 962498 intergenic not near genes chrX_9_960001 chrX_960001 RAL-217 1048 chrX 1416404 1416425 chrX 1416478 1416504 5 78 0.5 2.0 1.2 2.3 100 chrX 1416404 intron futsch + chrX 1416454 intron futsch + chrX 1416504 intron futsch + chrX_5_1415001 chrX_1415001 RAL-217 1049 chrX 1518042 1518074 chrX 1523444 1523476 jockey 7 5402 3.5 1.5 2.5 2.0 5434 chrX 1518042 intergenic inc + chrX 1520759 intergenic not near genes chrX 1523476 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-217 1050 chrX 1627981 1627986 chrX 1635448 1635454 gtwin 4 7468 7.0 5.5 6.2 0.6 7473 chrX 1627981 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635454 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-217 1051 chrX 1759248 1759254 chrX 1759368 1759374 6 120 2.5 8.0 5.2 1.0 126 chrX 1759248 intergenic not near genes chrX 1759311 intergenic not near genes chrX 1759374 intergenic not near genes chrX_6_1755001 chrX_1755001 RAL-217 1052 chrX 1954898 1954917 chrX 1962830 1962857 Stalker2 5 7933 3.5 3.0 3.2 1.2 7959 chrX 1954898 intron Hr4 + chrX 1958878 intron Hr4 + chrX 1962857 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-217 1053 chrX 2399840 2399871 chrX 2408190 2408196 roo 7 8342 4.5 2.5 3.5 1.6 8356 chrX 2399840 intergenic not near genes chrX 2404018 intergenic not near genes chrX 2408196 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-217 1054 chrX 2578815 2578845 chrX 2578919 2578948 6 104 1.5 3.0 2.2 1.9 133 chrX 2578815 intergenic Pdfr +,Vha36-3 - chrX 2578882 intergenic Vha36-3 -,Pdfr + chrX 2578948 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-217 1055 chrX 2844901 2844932 chrX 2852311 2852342 mdg1 6 7410 0.0 1.0 0.5 4.0 7441 chrX 2844901 intron kirre + chrX 2848622 intron kirre + chrX 2852342 intron kirre + chrX_6_2845001 chrX_2845001 RAL-217 1056 chrX 2870656 2870689 chrX 2870742 2870775 6 86 1.5 1.5 1.5 2.4 119 chrX 2870656 intron kirre + chrX 2870716 intron kirre + chrX 2870775 intron kirre + chrX_6_2870001 chrX_2870001 RAL-217 1057 chrX 2917414 2917437 chrX 2917571 2917594 4 157 0.0 2.0 1.0 2.0 180 chrX 2917414 intron kirre + chrX 2917504 intron kirre + chrX 2917594 intron kirre + chrX_4_2915001 chrX_2915001 RAL-217 1058 chrX 3075658 3075666 chrX 3080964 3080972 Transpac 4 5306 0.5 4.5 2.5 1.1 5314 chrX 3075658 intron kirre + chrX 3078315 intron kirre + chrX 3080972 intron kirre + chrX_4_3075001 chrX_3075001 RAL-217 1059 chrX 3203473 3203493 chrX 3203672 3203692 6 199 1.0 4.5 2.8 1.6 219 chrX 3203473 intron dnc + chrX 3203582 intron dnc + chrX 3203692 intron dnc + chrX_6_3200001 chrX_3200001 RAL-217 1060 chrX 3206488 3206504 chrX 3206566 3206583 5 79 0.0 0.0 0.0 5.0 95 chrX 3206488 intron dnc + chrX 3206536 intron dnc + chrX 3206583 intron dnc + chrX_5_3205001 chrX_3205001 RAL-217 1061 chrX 3415018 3415038 chrX 3421203 3421220 3S18 5 6184 0.5 0.0 0.2 4.2 6202 chrX 3415018 intron,intron CR44999 +,CG12535 - chrX 3418119 intron,intron CR44999 +,CG12535 - chrX 3421220 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-217 1062 chrX 3597550 3597579 chrX 3619718 3619746 roo 5 22168 3.0 1.5 2.2 1.6 22196 chrX 3597550 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619746 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-217 1063 chrX 3630544 3630573 chrX 3630619 3630649 6 75 2.0 1.0 1.5 2.4 105 chrX 3630544 intron AstA-R1 + chrX 3630596 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_6_3630001 chrX_3630001 RAL-217 1064 chrX 3881272 3881302 chrX 3881411 3881441 5 139 2.5 1.0 1.8 1.8 169 chrX 3881272 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-217 1065 chrX 3922135 3922158 chrX 3922409 3922414 4 267 0.0 5.0 2.5 1.1 279 chrX 3922135 intron CG42541 - chrX 3922274 intron CG42541 - chrX 3922414 intron CG42541 - chrX_4_3920001 chrX_3920001 RAL-217 1066 chrX 3986862 3986886 chrX 3994494 3994519 412 4 7632 2.5 1.0 1.8 1.4 7657 chrX 3986862 intergenic not near genes chrX 3990690 intergenic not near genes chrX 3994519 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-217 1067 chrX 3994807 3994824 chrX 3994959 3994977 7 152 1.5 1.5 1.5 2.8 170 chrX 3994807 intergenic not near genes chrX 3994892 intergenic not near genes chrX 3994977 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-217 1068 chrX 4157894 4157919 chrX 4164929 4164954 297 4 7035 3.0 0.5 1.8 1.4 7060 chrX 4157894 intron Fas2 - chrX 4161424 intron Fas2 - chrX 4164954 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-217 1069 chrX 4324719 4324746 chrX 4324795 4324823 6 72 5.0 2.0 3.5 1.3 104 chrX 4324719 intron norpA + chrX 4324771 intron norpA + chrX 4324823 intron norpA + chrX_6_4320001 chrX_4320001 RAL-217 1070 chrX 4515841 4515858 chrX 4515919 4515936 4 77 1.5 2.5 2.0 1.3 95 chrX 4515841 intron CR32773 - chrX 4515888 intron CR32773 - chrX 4515936 intron CR32773 - chrX_4_4515001 chrX_4515001 RAL-217 1071 chrX 4525344 4525364 chrX 4525440 4525460 4 96 2.5 7.5 5.0 0.7 116 chrX 4525344 intron CR32773 - chrX 4525402 intron CR32773 - chrX 4525460 intron CR32773 - chrX_4_4525001 chrX_4525001 RAL-217 1072 chrX 4763248 4763284 chrX 4763736 4763772 Stalker4 5 488 1.5 1.5 1.5 2.0 524 chrX 4763248 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763772 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-217 1073 chrX 4792382 4792393 chrX 4792815 4792826 jockey 6 433 1.5 3.5 2.5 1.7 444 chrX 4792382 intergenic not near genes chrX 4792604 intergenic not near genes chrX 4792826 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-217 1074 chrX 1562990 1562991 chrX 4805476 4805477 opus 4 3242486 19.0 11.0 15.0 0.2 3242487 chrX 1562990 intron Mur2B - chrX 3184234 intron dnc + chrX 4805477 3` UTR CR45516 - chrX_4_3180001 chrX_3180001 RAL-217 1075 chrX 5125894 5125924 chrX 5125971 5126001 5 76 3.0 3.0 3.0 1.2 107 chrX 5125894 intron,intron CG15465 +,rg + chrX 5125948 intron,intron CG15465 +,rg + chrX 5126001 intron,intron CG15465 +,rg + chrX_5_5125001 chrX_5125001 RAL-217 1076 chrX 5272826 5272851 chrX 5272913 5272938 4 86 2.0 0.5 1.2 1.8 112 chrX 5272826 intergenic not near genes chrX 5272882 intergenic not near genes chrX 5272938 intergenic not near genes chrX_4_5270001 chrX_5270001 RAL-217 1077 chrX 5798867 5798888 chrX 5799029 5799050 5 162 0.0 4.0 2.0 1.7 183 chrX 5798867 intergenic not near genes chrX 5798958 intergenic not near genes chrX 5799050 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-217 1078 chrX 5883815 5883837 chrX 5884056 5884076 pogo 6 241 2.0 2.5 2.2 1.9 261 chrX 5883815 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884076 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-217 1079 chrX 6003285 6003310 chrX 6003366 6003391 8 80 0.5 3.5 2.0 2.7 106 chrX 6003285 intron CR44498 + chrX 6003338 intron CR44498 + chrX 6003391 intron CR44498 + chrX_8_6000001 chrX_6000001 RAL-217 1080 chrX 6118697 6118732 chrX 6118779 6118814 7 82 1.0 3.5 2.2 2.2 117 chrX 6118697 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-217 1081 chrX 6211357 6211392 chrX 6211434 6211450 6 68 2.0 0.0 1.0 3.0 93 chrX 6211357 intergenic not near genes chrX 6211404 intergenic not near genes chrX 6211450 intergenic not near genes chrX_6_6210001 chrX_6210001 RAL-217 1082 chrX 6315164 6315191 chrX 6315293 6315320 6 130 2.0 3.0 2.5 1.7 156 chrX 6315164 intron CG15894 + chrX 6315242 intron CG15894 + chrX 6315320 intron CG15894 + chrX_6_6315001 chrX_6315001 RAL-217 1083 chrX 6335216 6335237 chrX 6337726 6337747 Tirant 5 2510 0.0 3.5 1.8 1.8 2531 chrX 6335216 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337747 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-217 1084 chrX 6392873 6392902 chrX 6397638 6397667 Doc 5 4765 1.0 5.0 3.0 1.2 4794 chrX 6392873 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397667 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-217 1085 chrX 6413533 6413564 chrX 6413967 6413998 6 433 1.5 1.5 1.5 2.4 465 chrX 6413533 intergenic not near genes chrX 6413766 intergenic not near genes chrX 6413998 intergenic not near genes chrX_6_6410001 chrX_6410001 RAL-217 1086 chrX 6551733 6551751 chrX 6551809 6551832 8 80 4.0 1.5 2.8 2.1 99 chrX 6551733 intron CG34417 + chrX 6551782 intron CG34417 + chrX 6551832 intron CG34417 + chrX_8_6550001 chrX_6550001 RAL-217 1087 chrX 6562825 6562849 chrX 6571307 6571331 Tirant 9 8479 3.5 3.5 3.5 2.0 8506 chrX 6562825 intron CG34417 + chrX 6567078 intron CG34417 + chrX 6571331 intron CG34417 + chrX_9_6565001 chrX_6565001 RAL-217 1088 chrX 6989503 6989531 chrX 6989590 6989618 6 87 1.5 1.5 1.5 2.4 115 chrX 6989503 intron ogre - chrX 6989560 intron ogre - chrX 6989618 intron ogre - chrX_6_6985001 chrX_6985001 RAL-217 1089 chrX 7023604 7023632 chrX 7030993 7031021 Tabor 8 7388 2.0 3.5 2.8 2.1 7417 chrX 7023604 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031021 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-217 1090 chrX 7125254 7125278 chrX 7134413 7134437 roo 5 9159 1.0 2.5 1.8 1.8 9183 chrX 7125254 intergenic not near genes chrX 7129846 intergenic not near genes chrX 7134437 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-217 1091 chrX 7737165 7737184 chrX 7737247 7737266 4 82 0.0 0.0 0.0 4.0 101 chrX 7737165 5` UTR Tom40 + chrX 7737216 intron Tom40 + chrX 7737266 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-217 1092 chrX 7784237 7784240 chrX 7784539 7784542 jockey 5 302 3.0 2.5 2.8 1.3 305 chrX 7784237 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784542 intergenic not near genes chrX_5_7780001 chrX_7780001 RAL-217 1093 chrX 7845734 7845757 chrX 7847225 7847248 hopper2 6 1491 3.0 6.0 4.5 1.1 1514 chrX 7845734 intergenic not near genes chrX 7846491 intergenic not near genes chrX 7847248 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-217 1094 chrX 8075140 8075174 chrX 8075249 8075283 8 109 1.5 3.0 2.2 2.5 143 chrX 8075140 exon Upf2 - chrX 8075212 5` UTR Upf2 - chrX 8075283 5` UTR Upf2 - chrX_8_8075001 chrX_8075001 RAL-217 1095 chrX 8658342 8658375 chrX 8658502 8658535 7 160 0.0 1.5 0.8 3.9 193 chrX 8658342 intergenic not near genes chrX 8658438 intergenic not near genes chrX 8658535 intergenic not near genes chrX_7_8655001 chrX_8655001 RAL-217 1096 chrX 8931385 8931410 chrX 8931478 8931504 10 92 1.5 2.5 2.0 3.3 119 chrX 8931385 intron rdgA + chrX 8931444 intron rdgA + chrX 8931504 intron rdgA + chrX_10_8930001 chrX_8930001 RAL-217 1097 chrX 9004103 9004121 chrX 9004183 9004201 4 80 1.0 0.5 0.8 2.2 98 chrX 9004103 intron,intron rdgA +,CR43836 - chrX 9004152 intron,intron rdgA +,CR43836 - chrX 9004201 intron,intron rdgA +,CR43836 - chrX_4_9000001 chrX_9000001 RAL-217 1098 chrX 9062728 9062745 chrX 9062806 9062823 4 78 0.5 0.5 0.5 2.7 95 chrX 9062728 intron CG15365 - chrX 9062776 intron CG15365 - chrX 9062823 intron CG15365 - chrX_4_9060001 chrX_9060001 RAL-217 1099 chrX 9337950 9337972 chrX 9338041 9338063 5 90 1.0 2.5 1.8 1.8 113 chrX 9337950 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338063 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-217 1100 chrX 9401312 9401335 chrX 9401419 9401439 6 102 1.0 2.0 1.5 2.4 127 chrX 9401312 intron mgl - chrX 9401376 intron mgl - chrX 9401439 intron mgl - chrX_6_9400001 chrX_9400001 RAL-217 1101 chrX 9508141 9508166 chrX 9509659 9509684 jockey 8 1518 2.0 2.5 2.2 2.5 1543 chrX 9508141 intron CG32700 - chrX 9508912 intron CG32700 - chrX 9509684 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-217 1102 chrX 9575794 9575815 chrX 9576114 9576138 mdg3 6 322 3.0 2.5 2.8 1.6 344 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576138 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-217 1103 chrX 9656895 9656927 chrX 9656990 9657022 10 95 2.5 1.5 2.0 3.3 127 chrX 9656895 intron l(1)G0232 - chrX 9656958 intron l(1)G0232 - chrX 9657022 intron l(1)G0232 - chrX_10_9655001 chrX_9655001 RAL-217 1104 chrX 9784169 9784206 chrX 9784357 9784394 13 187 5.5 1.5 3.5 2.9 225 chrX 9784169 intron CG32698 + chrX 9784282 intron CG32698 + chrX 9784394 intron CG32698 + chrX_13_9780001 chrX_9780001 RAL-217 1105 chrX 10330429 10330673 chrX 10330864 10330875 4 266 10.0 9.0 9.5 0.4 446 chrX 10330429 exon CG15306 - chrX 10330652 exon CG15306 - chrX 10330875 exon CG15306 - chrX_4_10330001 chrX_10330001 RAL-217 1106 chrX 10367196 10367197 chrX 10367304 10367306 4 109 4.0 1.5 2.8 1.1 110 chrX 10367196 exon CG32679 - chrX 10367251 intron CG32679 - chrX 10367306 intron CG32679 - chrX_4_10365001 chrX_10365001 RAL-217 1107 chrX 10506508 10506525 chrX 10506589 10506611 7 84 3.5 5.0 4.2 1.3 103 chrX 10506508 intron spri - chrX 10506560 intron spri - chrX 10506611 intron spri - chrX_7_10505001 chrX_10505001 RAL-217 1108 chrX 10933919 10933942 chrX 10934007 10934030 8 88 0.5 1.0 0.8 4.4 111 chrX 10933919 intron Myo10A + chrX 10933974 intron Myo10A + chrX 10934030 intron Myo10A + chrX_8_10930001 chrX_10930001 RAL-217 1109 chrX 11160494 11160517 chrX 11160585 11160605 13 90 3.0 3.0 3.0 3.2 111 chrX 11160494 intron Dlic + chrX 11160550 intron Dlic + chrX 11160605 intron Dlic + chrX_13_11160001 chrX_11160001 RAL-217 1110 chrX 11256950 11256961 chrX 11257320 11257346 6 382 6.0 1.5 3.8 1.2 396 chrX 11256950 intron CG44422 - chrX 11257148 intron CG44422 - chrX 11257346 intron CG44422 - chrX_6_11255001 chrX_11255001 RAL-217 1111 chrX 11312066 11312080 chrX 11319411 11319432 Stalker2 5 7350 4.5 4.0 4.2 1.0 7366 chrX 11312066 intergenic not near genes chrX 11315749 intergenic not near genes chrX 11319432 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-217 1112 chrX 12038093 12038111 chrX 12038287 12038305 7 194 5.0 2.5 3.8 1.5 212 chrX 12038093 intergenic not near genes chrX 12038199 intergenic not near genes chrX 12038305 intergenic not near genes chrX_7_12035001 chrX_12035001 RAL-217 1113 chrX 12103041 12103061 chrX 12103119 12103139 5 78 0.5 0.5 0.5 3.3 98 chrX 12103041 intron,intron,exon CR43960 +,Ten-a +,CG11356 - chrX 12103090 intron,intron,intron CR43960 +,Ten-a +,CG11356 - chrX 12103139 intron,intron,intron CR43960 +,Ten-a +,CG11356 - chrX_5_12100001 chrX_12100001 RAL-217 1114 chrX 12168141 12168161 chrX 12173582 12173603 I-element 5 5442 1.5 4.5 3.0 1.2 5462 chrX 12168141 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173603 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-217 1115 chrX 12623023 12623049 chrX 12623103 12623127 6 77 1.0 2.5 1.8 2.1 104 chrX 12623023 intergenic CR44568 + chrX 12623075 intergenic CR44568 + chrX 12623127 intergenic CR44568 + chrX_6_12620001 chrX_12620001 RAL-217 1116 chrX 12930599 12930608 chrX 12937713 12937722 HMS-Beagle 4 7114 1.5 2.0 1.8 1.4 7123 chrX 12930599 intron fne + chrX 12934160 intron fne + chrX 12937722 intron fne + chrX_4_12930001 chrX_12930001 RAL-217 1117 chrX 12971690 12971707 chrX 12971766 12971783 4 76 3.5 6.5 5.0 0.7 93 chrX 12971690 intron,exon CR43636 -,CG15721 + chrX 12971736 intron,exon CR43636 -,CG15721 + chrX 12971783 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-217 1118 chrX 13172354 13172360 chrX 13172424 13172436 5 75 2.0 2.0 2.0 1.7 82 chrX 13172354 exon CG34411 - chrX 13172395 intron CG34411 - chrX 13172436 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-217 1119 chrX 13935515 13935523 chrX 13935598 13935606 4 83 3.5 5.5 4.5 0.7 91 chrX 13935515 intron mamo - chrX 13935560 intron mamo - chrX 13935606 intron mamo - chrX_4_13935001 chrX_13935001 RAL-217 1120 chrX 14105034 14105047 chrX 14114180 14114196 roo 6 9150 4.5 3.5 4.0 1.2 9162 chrX 14105034 intergenic not near genes chrX 14109615 intergenic not near genes chrX 14114196 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-217 1121 chrX 14131487 14131524 chrX 14131568 14131604 12 80 1.0 2.5 1.8 4.3 117 chrX 14131487 intergenic not near genes chrX 14131546 intergenic not near genes chrX 14131604 intergenic not near genes chrX_12_14130001 chrX_14130001 RAL-217 1122 chrX 14166270 14166280 chrX 14166630 14166640 6 360 1.0 4.5 2.8 1.6 370 chrX 14166270 intergenic not near genes chrX 14166455 intergenic not near genes chrX 14166640 intergenic not near genes chrX_6_14165001 chrX_14165001 RAL-217 1123 chrX 14411258 14411270 chrX 14411336 14411348 4 78 0.5 0.5 0.5 2.7 90 chrX 14411258 intron dpr8 + chrX 14411303 intron dpr8 + chrX 14411348 intron dpr8 + chrX_4_14410001 chrX_14410001 RAL-217 1124 chrX 14636464 14636492 chrX 14641905 14641932 I-element 5 5441 4.0 1.5 2.8 1.3 5468 chrX 14636464 intron NetA - chrX 14639198 intron NetA - chrX 14641932 intron NetA - chrX_5_14635001 chrX_14635001 RAL-217 1125 chrX 14818777 14818795 chrX 14823975 14823984 copia 5 5196 1.0 3.5 2.2 1.6 5207 chrX 14818777 intron rut - chrX 14821380 intron rut - chrX 14823984 intron rut - chrX_5_14820001 chrX_14820001 RAL-217 1126 chrX 15273712 15273738 chrX 15274868 15274905 1360 8 1157 7.0 5.0 6.0 1.1 1193 chrX 15273712 intergenic not near genes chrX 15274308 intergenic not near genes chrX 15274905 intergenic not near genes chrX_8_15270001 chrX_15270001 RAL-217 1127 chrX 15277639 15277663 chrX 15277722 15277748 4 84 0.5 1.5 1.0 2.0 109 chrX 15277639 intergenic not near genes chrX 15277694 intergenic not near genes chrX 15277748 intergenic not near genes chrX_4_15275001 chrX_15275001 RAL-217 1128 chrX 15413048 15413072 chrX 15417350 15417373 Juan 6 4302 5.0 0.5 2.8 1.6 4325 chrX 15413048 intron Cngl - chrX 15415210 intron Cngl - chrX 15417373 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-217 1129 chrX 15435689 15435700 chrX 15436122 15436133 rover 5 433 0.0 3.5 1.8 1.8 444 chrX 15435689 intron Cngl - chrX 15435911 intron Cngl - chrX 15436133 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-217 1130 chrX 15519811 15519829 chrX 15519889 15519907 4 77 1.5 3.5 2.5 1.1 96 chrX 15519811 intron Ac13E - chrX 15519859 intron Ac13E - chrX 15519907 intron Ac13E - chrX_4_15515001 chrX_15515001 RAL-217 1131 chrX 15659382 15659402 chrX 15659460 15659482 6 79 3.5 4.5 4.0 1.2 100 chrX 15659382 intergenic not near genes chrX 15659432 intergenic not near genes chrX 15659482 intergenic not near genes chrX_6_15655001 chrX_15655001 RAL-217 1132 chrX 15678047 15678064 chrX 15678124 15678139 5 76 2.5 4.0 3.2 1.2 92 chrX 15678047 intergenic CG12708 + chrX 15678093 intergenic CG12708 + chrX 15678139 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-217 1133 chrX 16329436 16329448 chrX 16329519 16329529 6 82 0.0 7.5 3.8 1.2 93 chrX 16329436 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329529 exon CG9919 - chrX_6_16325001 chrX_16325001 RAL-217 1134 chrX 16519945 16519969 chrX 16520031 16520055 10 86 1.0 1.0 1.0 5.0 110 chrX 16519945 intron para - chrX 16520000 intron para - chrX 16520055 intron para - chrX_10_16520001 chrX_16520001 RAL-217 1135 chrX 16785289 16785299 chrX 16785393 16785403 4 104 1.0 1.5 1.2 1.8 114 chrX 16785289 3` UTR CG9609 - chrX 16785346 3` UTR CG9609 - chrX 16785403 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-217 1136 chrX 17011971 17012000 chrX 17012053 17012083 9 83 1.5 1.0 1.2 4.1 112 chrX 17011971 intron CG45002 - chrX 17012027 intron CG45002 - chrX 17012083 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-217 1137 chrX 17740377 17740393 chrX 17740454 17740470 4 74 6.5 3.0 4.8 0.7 93 chrX 17740377 intron CG42684 + chrX 17740424 intron CG42684 + chrX 17740470 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-217 1138 chrX 17766363 17766376 chrX 17766455 17766473 5 93 3.0 1.5 2.2 1.6 110 chrX 17766363 intergenic not near genes chrX 17766418 intergenic not near genes chrX 17766473 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-217 1139 chrX 18122817 18122845 chrX 18122893 18122921 4 76 1.5 0.0 0.8 2.2 104 chrX 18122817 5` UTR CR45606 + chrX 18122869 5` UTR CR45606 + chrX 18122921 intergenic CR45606 + chrX_4_18120001 chrX_18120001 RAL-217 1140 chrX 18127938 18127966 chrX 18128023 18128051 7 85 1.5 2.0 1.8 2.5 113 chrX 18127938 intergenic mir-210 + chrX 18127994 intergenic mir-210 + chrX 18128051 intergenic mir-210 + chrX_7_18125001 chrX_18125001 RAL-217 1141 chrX 18194067 18194105 chrX 18194602 18194640 BS 6 535 0.5 0.0 0.2 5.0 573 chrX 18194067 intron Frq2 + chrX 18194354 intron Frq2 + chrX 18194640 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-217 1142 chrX 18218767 18218780 chrX 18218860 18218875 5 94 2.0 5.0 3.5 1.1 108 chrX 18218767 intron CG33639 - chrX 18218821 intron CG33639 - chrX 18218875 intron CG33639 - chrX_5_18215001 chrX_18215001 RAL-217 1143 chrX 18250430 18250450 chrX 18250539 18250556 5 108 1.0 3.0 2.0 1.7 126 chrX 18250430 intergenic not near genes chrX 18250493 intergenic not near genes chrX 18250556 intergenic not near genes chrX_5_18250001 chrX_18250001 RAL-217 1144 chrX 18486118 18486143 chrX 18486207 18486232 8 89 1.5 5.5 3.5 1.8 114 chrX 18486118 exon psh - chrX 18486175 intron psh - chrX 18486232 intron psh - chrX_8_18485001 chrX_18485001 RAL-217 1145 chrX 18537523 18537536 chrX 18537626 18537641 7 103 4.5 1.5 3.0 1.8 118 chrX 18537523 intron Bx + chrX 18537582 intron Bx + chrX 18537641 intron Bx + chrX_7_18535001 chrX_18535001 RAL-217 1146 chrX 18896909 18896940 chrX 18896986 18897017 8 77 3.0 1.0 2.0 2.7 108 chrX 18896909 intergenic CG7349 + chrX 18896963 intergenic CG7349 + chrX 18897017 intergenic CG7349 + chrX_8_18895001 chrX_18895001 RAL-217 1147 chrX 19136560 19136581 chrX 19143480 19143500 412 5 6920 1.0 3.0 2.0 1.7 6940 chrX 19136560 intergenic not near genes chrX 19140030 intergenic not near genes chrX 19143500 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-217 1148 chrX 19176215 19176234 chrX 19176299 19176318 9 84 4.0 4.0 4.0 1.8 103 chrX 19176215 3` UTR CG7556 - chrX 19176266 3` UTR CG7556 - chrX 19176318 3` UTR CG7556 - chrX_9_19175001 chrX_19175001 RAL-217 1149 chrX 19472147 19472154 chrX 19472697 19472724 jockey 4 562 0.5 1.5 1.0 2.0 577 chrX 19472147 intergenic kek5 + chrX 19472436 intergenic not near genes chrX 19472724 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-217 1150 chrX 19593946 19593973 chrX 19594031 19594058 6 85 4.5 4.0 4.2 1.2 112 chrX 19593946 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594058 intron CG14205 + chrX_6_19590001 chrX_19590001 RAL-217 1151 chrX 19710071 19710094 chrX 19711857 19711880 S-element 10 1786 2.0 3.5 2.8 2.6 1809 chrX 19710071 intron meso18E - chrX 19710976 intron meso18E - chrX 19711880 intron meso18E - chrX_10_19710001 chrX_19710001 RAL-217 1152 chrX 19744646 19744662 chrX 19744752 19744761 4 109 15.5 12.0 13.8 0.3 115 chrX 19744646 5` UTR,exon CG33932 +,Rpp20 + chrX 19744704 intron,intron CG33932 +,Rpp20 + chrX 19744761 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-217 1153 chrX 19769387 19769417 chrX 19769471 19769500 4 84 3.0 3.5 3.2 1.0 113 chrX 19769387 3` UTR vfl - chrX 19769444 exon vfl - chrX 19769500 exon vfl - chrX_4_19765001 chrX_19765001 RAL-217 1154 chrX 20073577 20073601 chrX 20073702 20073715 10 124 3.5 1.5 2.5 2.9 138 chrX 20073577 intergenic not near genes chrX 20073646 intergenic not near genes chrX 20073715 intergenic not near genes chrX_10_20070001 chrX_20070001 RAL-217 1155 chrX 20097038 20097056 chrX 20097221 20097239 6 183 3.5 2.5 3.0 1.5 201 chrX 20097038 intergenic not near genes chrX 20097138 intergenic not near genes chrX 20097239 intergenic not near genes chrX_6_20095001 chrX_20095001 RAL-217 1156 chrX 20105199 20105231 chrX 20105302 20105334 14 104 28.5 25.5 27.0 0.5 135 chrX 20105199 intergenic not near genes chrX 20105266 intergenic not near genes chrX 20105334 intergenic not near genes chrX_14_20105001 chrX_20105001 RAL-217 1157 chrX 20312880 20312909 chrX 20312958 20312986 4 76 0.0 2.0 1.0 2.0 106 chrX 20312880 intron CG1504 - chrX 20312933 intron CG1504 - chrX 20312986 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-217 1158 chrX 20374109 20374128 chrX 20374185 20374204 8 76 1.0 2.5 1.8 2.9 95 chrX 20374109 intergenic not near genes chrX 20374156 intergenic not near genes chrX 20374204 intergenic not near genes chrX_8_20370001 chrX_20370001 RAL-217 1159 chrX 20377327 20377337 chrX 20378794 20378804 hobo 5 1467 1.5 5.5 3.5 1.1 1477 chrX 20377327 intergenic not near genes chrX 20378066 intergenic not near genes chrX 20378804 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-217 1160 chrX 20426180 20426190 chrX 20428378 20428408 7 2205 26.5 27.5 27.0 0.2 2228 chrX 20426180 exon cactin + chrX 20427294 intergenic CG11710 -,CG15456 - chrX 20428408 exon CG11710 - chrX_7_20425001 chrX_20425001 RAL-217 1161 chrX 20464123 20464140 chrX 20467693 20467713 5 3570 22.5 28.0 25.2 0.2 3590 chrX 20464123 exon CG32506 + chrX 20465918 3` UTR CG32506 + chrX 20467713 5` UTR GstT3 + chrX_5_20465001 chrX_20465001 RAL-217 1162 chrX 20483840 20483872 chrX 20483962 20483994 4 122 3.0 1.5 2.2 1.2 154 chrX 20483840 intron RhoGAP19D - chrX 20483917 intron RhoGAP19D - chrX 20483994 intron RhoGAP19D - chrX_4_20480001 chrX_20480001 RAL-217 1163 chrX 20940722 20940756 chrX 20942191 20942225 hobo 8 1469 2.0 3.5 2.8 2.1 1503 chrX 20940722 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942225 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-217 1164 chrX 21176150 21176166 chrX 21177171 21177187 4 1021 8.0 17.5 12.8 0.3 1037 chrX 21176150 intergenic not near genes chrX 21176668 intergenic not near genes chrX 21177187 intergenic not near genes chrX_4_21175001 chrX_21175001 RAL-217 1165 chrX 21474404 21474432 chrX 21474770 21474798 1731 7 366 1.0 2.0 1.5 2.8 394 chrX 21474404 intergenic not near genes chrX 21474601 intergenic not near genes chrX 21474798 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-217 1166 chrX 21516988 21517021 chrX 21517067 21517099 15 77 2.0 4.5 3.2 3.6 111 chrX 21516988 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517099 intron CR45082 - chrX_15_21515001 chrX_21515001 RAL-217 1167 chrX 21565413 21565442 chrX 21565491 21565520 7 77 0.5 2.0 1.2 3.2 107 chrX 21565413 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565520 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-217 1168 chrX 22660570 22660578 chrX 22660654 22660658 4 82 7.5 0.0 3.8 0.8 88 chrX 22660570 intron CR44997 + chrX 22660614 intron CR44997 + chrX 22660658 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-217 1169 chrX 22922528 22922546 chrX 22922608 22922626 4 78 0.5 2.0 1.2 1.8 98 chrX 22922528 intergenic not near genes chrX 22922577 intergenic not near genes chrX 22922626 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-217 1170 chrX 22992394 22992427 chrX 22992525 22992558 5 131 0.5 1.0 0.8 2.8 164 chrX 22992394 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992558 intron,intron stnA -,stnB - chrX_5_22990001 chrX_22990001 RAL-217 1171 chrY 311344 311346 chrY 311461 311463 4 117 0.5 2.5 1.5 1.6 119 chrY 311344 intergenic not near genes chrY 311404 intergenic not near genes chrY 311463 intergenic not near genes chrY_4_310001 chrY_310001 RAL-217 1172 chrY 975596 975818 chrY 975713 975898 9 139 99.5 97.5 98.5 0.1 302 chrY 975596 intergenic not near genes chrY 975747 intergenic not near genes chrY 975898 intergenic not near genes chrY_9_975001 chrY_975001 RAL-217