SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47491 chr2L 52565 52596 jockey 16 5105 7.5 3.5 5.5 2.5 5136 chr2L 47460 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52596 intron Cda5 - chr2L_16_50001 chr2L_50001 RAL-208 2 chr2L 180059 180087 chr2L 180141 180172 10 85 3.5 2.0 2.8 2.6 113 chr2L 180059 intron spen + chr2L 180116 intron spen + chr2L 180172 intron spen + chr2L_10_180001 chr2L_180001 RAL-208 3 chr2L 254933 254958 chr2L 255025 255050 10 92 5.0 4.5 4.8 1.7 117 chr2L 254933 intron CG3645 - chr2L 254992 intron CG3645 - chr2L 255050 intron CG3645 - chr2L_10_250001 chr2L_250001 RAL-208 4 chr2L 314280 314315 chr2L 314366 314400 16 86 3.5 2.0 2.8 4.2 120 chr2L 314280 intron Plc21C + chr2L 314340 intron Plc21C + chr2L 314400 intron Plc21C + chr2L_16_310001 chr2L_310001 RAL-208 5 chr2L 325138 325154 chr2L 325215 325230 9 76 6.5 6.5 6.5 1.2 92 chr2L 325138 intron Plc21C + chr2L 325184 intron Plc21C + chr2L 325230 intron Plc21C + chr2L_9_325001 chr2L_325001 RAL-208 6 chr2L 347889 347913 chr2L 355389 355412 blood 6 7500 4.5 4.0 4.2 1.2 7523 chr2L 347889 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355412 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-208 7 chr2L 388576 388608 chr2L 388744 388776 8 168 1.0 4.0 2.5 2.3 200 chr2L 388576 intergenic not near genes chr2L 388676 intergenic not near genes chr2L 388776 intergenic not near genes chr2L_8_385001 chr2L_385001 RAL-208 8 chr2L 407947 407972 chr2L 408028 408053 4 80 1.5 1.0 1.2 1.8 106 chr2L 407947 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408053 3` UTR AP-2alpha - chr2L_4_405001 chr2L_405001 RAL-208 9 chr2L 467360 467491 chr2L 467459 467580 13 91 4.0 4.0 4.0 2.6 220 chr2L 467360 intron CG4297 - chr2L 467470 intron CG4297 - chr2L 467580 intron CG4297 - chr2L_13_465001 chr2L_465001 RAL-208 10 chr2L 686916 686951 chr2L 695956 695991 roo 6 9040 1.0 5.0 3.0 1.5 9075 chr2L 686916 intron ds - chr2L 691454 intron ds - chr2L 695991 intron ds - chr2L_6_690001 chr2L_690001 RAL-208 11 chr2L 736883 736890 chr2L 736988 736995 7 105 5.5 2.5 4.0 1.4 112 chr2L 736883 intergenic Eaat2 - chr2L 736939 intergenic Eaat2 - chr2L 736995 intergenic Eaat2 - chr2L_7_735001 chr2L_735001 RAL-208 12 chr2L 764555 764568 chr2L 764655 764668 6 100 4.0 2.0 3.0 1.5 113 chr2L 764555 intergenic not near genes chr2L 764612 intergenic not near genes chr2L 764668 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-208 13 chr2L 770469 770485 chr2L 772250 772266 Bari1 7 1780 2.0 1.5 1.8 2.5 1797 chr2L 770469 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772266 intergenic CR44614 + chr2L_7_770001 chr2L_770001 RAL-208 14 chr2L 795267 795292 chr2L 795376 795397 5 109 2.5 0.0 1.2 2.3 130 chr2L 795267 intergenic not near genes chr2L 795332 intergenic not near genes chr2L 795397 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-208 15 chr2L 877840 877850 chr2L 877921 877931 7 81 5.5 1.0 3.2 1.7 91 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877886 3` UTR,intron CG15824 -,ninaA + chr2L 877931 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-208 16 chr2L 936578 936591 chr2L 936668 936681 8 90 2.5 2.0 2.2 2.5 103 chr2L 936578 intron CG4341 + chr2L 936630 intron CG4341 + chr2L 936681 intron CG4341 + chr2L_8_935001 chr2L_935001 RAL-208 17 chr2L 955988 955994 chr2L 956084 956090 5 96 0.0 4.0 2.0 1.7 102 chr2L 955988 intron CG4341 + chr2L 956039 intron CG4341 + chr2L 956090 intron CG4341 + chr2L_5_955001 chr2L_955001 RAL-208 18 chr2L 976879 976912 chr2L 984514 984547 roo 17 7636 4.0 2.0 3.0 4.2 7668 chr2L 976879 intergenic not near genes chr2L 980713 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_17_980001 chr2L_980001 RAL-208 19 chr2L 1019457 1019483 chr2L 1019541 1019565 16 83 6.0 1.5 3.8 3.3 108 chr2L 1019457 intron IA-2 - chr2L 1019511 intron IA-2 - chr2L 1019565 intron IA-2 - chr2L_16_1015001 chr2L_1015001 RAL-208 20 chr2L 1066098 1066127 chr2L 1066179 1066205 18 80 3.5 6.5 5.0 3.0 107 chr2L 1066098 intron S - chr2L 1066152 intron S - chr2L 1066205 intron S - chr2L_18_1065001 chr2L_1065001 RAL-208 21 chr2L 1096382 1096412 chr2L 1096461 1096488 4 78 3.0 5.0 4.0 0.8 106 chr2L 1096382 intron CG4629 - chr2L 1096435 intron CG4629 - chr2L 1096488 intron CG4629 - chr2L_4_1095001 chr2L_1095001 RAL-208 22 chr2L 1213678 1213697 chr2L 1213767 1213786 11 88 3.5 6.0 4.8 1.9 108 chr2L 1213678 intergenic not near genes chr2L 1213732 intergenic not near genes chr2L 1213786 intergenic not near genes chr2L_11_1210001 chr2L_1210001 RAL-208 23 chr2L 1220132 1220157 chr2L 1227595 1227623 blood 9 7466 2.0 2.0 2.0 3.0 7491 chr2L 1220132 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227623 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-208 24 chr2L 1296562 1296570 chr2L 1296835 1296843 5 273 6.0 3.5 4.8 0.9 281 chr2L 1296562 3` UTR robo3 + chr2L 1296702 intergenic robo3 + chr2L 1296843 intergenic robo3 + chr2L_5_1295001 chr2L_1295001 RAL-208 25 chr2L 1301778 1301784 chr2L 1302316 1302323 gypsy 4 538 0.0 6.0 3.0 1.0 545 chr2L 1301778 intergenic not near genes chr2L 1302050 intergenic not near genes chr2L 1302323 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-208 26 chr2L 1428264 1428283 chr2L 1428352 1428374 8 90 2.5 3.0 2.8 2.1 110 chr2L 1428264 intergenic CG43401 + chr2L 1428319 intergenic CG43401 + chr2L 1428374 intergenic CG43401 + chr2L_8_1425001 chr2L_1425001 RAL-208 27 chr2L 1436623 1436640 chr2L 1436709 1436726 5 86 5.0 4.5 4.8 0.9 103 chr2L 1436623 intergenic not near genes chr2L 1436674 intergenic not near genes chr2L 1436726 intergenic not near genes chr2L_5_1435001 chr2L_1435001 RAL-208 28 chr2L 1458245 1458259 chr2L 1458322 1458336 6 77 11.5 3.5 7.5 0.7 91 chr2L 1458245 intergenic not near genes chr2L 1458290 intergenic not near genes chr2L 1458336 intergenic not near genes chr2L_6_1455001 chr2L_1455001 RAL-208 29 chr2L 1503424 1503455 chr2L 1503502 1503533 15 78 1.5 2.0 1.8 5.4 109 chr2L 1503424 intron CR44064 + chr2L 1503478 intron CR44064 + chr2L 1503533 intron CR44064 + chr2L_15_1500001 chr2L_1500001 RAL-208 30 chr2L 1536500 1536525 chr2L 1536632 1536657 8 131 0.0 4.5 2.2 2.5 157 chr2L 1536500 intergenic not near genes chr2L 1536578 intergenic not near genes chr2L 1536657 intergenic not near genes chr2L_8_1535001 chr2L_1535001 RAL-208 31 chr2L 1570685 1570717 chr2L 1573557 1573589 F-element 13 2872 2.0 3.0 2.5 3.7 2904 chr2L 1570685 intron haf + chr2L 1572137 intron haf + chr2L 1573589 intron haf + chr2L_13_1570001 chr2L_1570001 RAL-208 32 chr2L 1590969 1590985 chr2L 1591045 1591061 4 76 3.5 3.5 3.5 0.9 92 chr2L 1590969 intron haf + chr2L 1591015 intron haf + chr2L 1591061 intron haf + chr2L_4_1590001 chr2L_1590001 RAL-208 33 chr2L 1592235 1592254 chr2L 1592345 1592364 8 110 4.0 4.0 4.0 1.6 129 chr2L 1592235 intron haf + chr2L 1592300 intron haf + chr2L 1592364 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-208 34 chr2L 1678979 1678999 chr2L 1686444 1686464 blood 6 7465 5.0 1.5 3.2 1.4 7485 chr2L 1678979 intron chinmo + chr2L 1682722 intron chinmo + chr2L 1686464 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-208 35 chr2L 1707285 1707304 chr2L 1707394 1707410 5 108 3.0 1.0 2.0 1.7 125 chr2L 1707285 3` UTR CG17660 - chr2L 1707348 3` UTR CG17660 - chr2L 1707410 3` UTR CG17660 - chr2L_5_1705001 chr2L_1705001 RAL-208 36 chr2L 1711355 1711389 chr2L 1711678 1711713 mdg3 7 323 5.5 6.5 6.0 1.0 358 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711713 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-208 37 chr2L 1878239 1878271 chr2L 1878363 1878391 9 123 3.5 3.0 3.2 2.1 152 chr2L 1878239 intron CG31663 - chr2L 1878315 intron CG31663 - chr2L 1878391 intron CG31663 - chr2L_9_1875001 chr2L_1875001 RAL-208 38 chr2L 1883417 1883439 chr2L 1883999 1884019 6 580 2.5 1.5 2.0 2.0 602 chr2L 1883417 intron CG15358 - chr2L 1883718 intron CG15358 - chr2L 1884019 exon CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-208 39 chr2L 1924420 1924448 chr2L 1924502 1924530 5 82 1.0 0.0 0.5 3.3 110 chr2L 1924420 intron CG7337 + chr2L 1924475 intron CG7337 + chr2L 1924530 intron CG7337 + chr2L_5_1920001 chr2L_1920001 RAL-208 40 chr2L 1993201 1993224 chr2L 1993284 1993310 6 85 4.0 3.0 3.5 1.3 109 chr2L 1993201 intergenic not near genes chr2L 1993256 intergenic not near genes chr2L 1993310 intergenic not near genes chr2L_6_1990001 chr2L_1990001 RAL-208 41 chr2L 2085711 2085730 chr2L 2086048 2086069 10 339 1.0 5.0 3.0 2.5 358 chr2L 2085711 intron dpr3 - chr2L 2085890 intron dpr3 - chr2L 2086069 intron dpr3 - chr2L_10_2085001 chr2L_2085001 RAL-208 42 chr2L 2100378 2100399 chr2L 2109529 2109550 roo 5 9150 8.0 2.0 5.0 0.8 9172 chr2L 2100378 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109550 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-208 43 chr2L 2112120 2112145 chr2L 2119782 2119805 opus 14 7661 1.5 5.5 3.5 3.1 7685 chr2L 2112120 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119805 intergenic not near genes chr2L_14_2115001 chr2L_2115001 RAL-208 44 chr2L 2294041 2294075 chr2L 2299246 2299280 copia 13 5204 0.5 2.0 1.2 5.9 5239 chr2L 2294041 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_13_2295001 chr2L_2295001 RAL-208 45 chr2L 2348107 2348136 chr2L 2348189 2348218 7 82 1.0 3.5 2.2 2.2 111 chr2L 2348107 intron,intron CG9967 -,eys + chr2L 2348162 intron,intron CG9967 -,eys + chr2L 2348218 intron,intron CG9967 -,eys + chr2L_7_2345001 chr2L_2345001 RAL-208 46 chr2L 2372368 2372402 chr2L 2372454 2372482 4 84 0.0 1.5 0.8 2.2 114 chr2L 2372368 intergenic CG3609 - chr2L 2372425 intergenic CG3609 - chr2L 2372482 3` UTR CG3609 - chr2L_4_2370001 chr2L_2370001 RAL-208 47 chr2L 2503716 2503740 chr2L 2504495 2504519 9 778 2.5 3.5 3.0 2.2 803 chr2L 2503716 intergenic not near genes chr2L 2504118 intergenic not near genes chr2L 2504519 intergenic not near genes chr2L_9_2500001 chr2L_2500001 RAL-208 48 chr2L 2565538 2565569 chr2L 2571606 2571637 297 7 6067 1.0 2.5 1.8 2.5 6099 chr2L 2565538 exon Cyp309a2 - chr2L 2568588 intron Cyp309a2 - chr2L 2571637 intron Cyp309a2 - chr2L_7_2565001 chr2L_2565001 RAL-208 49 chr2L 2661201 2661235 chr2L 2663039 2663073 I-element 8 1838 2.0 5.0 3.5 1.8 1872 chr2L 2661201 intergenic not near genes chr2L 2662137 intergenic not near genes chr2L 2663073 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-208 50 chr2L 2702605 2702631 chr2L 2702685 2702712 12 81 2.5 1.5 2.0 4.0 107 chr2L 2702605 intron CG31690 + chr2L 2702658 intron CG31690 + chr2L 2702712 intron CG31690 + chr2L_12_2700001 chr2L_2700001 RAL-208 51 chr2L 2713511 2713528 chr2L 2713610 2713627 11 99 7.0 4.0 5.5 1.7 116 chr2L 2713511 intron CG31690 + chr2L 2713569 intron CG31690 + chr2L 2713627 intron CG31690 + chr2L_11_2710001 chr2L_2710001 RAL-208 52 chr2L 2885375 2885393 chr2L 2885452 2885470 4 77 2.0 7.0 4.5 0.7 95 chr2L 2885375 intron NTPase - chr2L 2885422 intron NTPase - chr2L 2885470 intron NTPase - chr2L_4_2885001 chr2L_2885001 RAL-208 53 chr2L 3073033 3073064 chr2L 3078236 3078264 copia 6 5202 3.5 3.0 3.2 1.4 5231 chr2L 3073033 intron toc - chr2L 3075648 intron toc - chr2L 3078264 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-208 54 chr2L 3078506 3078538 chr2L 3078794 3078826 6 288 2.0 5.0 3.5 1.3 320 chr2L 3078506 intron toc - chr2L 3078666 intron toc - chr2L 3078826 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-208 55 chr2L 3108868 3108895 chr2L 3108945 3108969 13 76 3.5 3.5 3.5 2.9 101 chr2L 3108868 intron toc - chr2L 3108918 intron toc - chr2L 3108969 intron toc - chr2L_13_3105001 chr2L_3105001 RAL-208 56 chr2L 3113414 3113447 chr2L 3113509 3113542 7 95 0.0 1.0 0.5 4.7 128 chr2L 3113414 intron toc - chr2L 3113478 intron toc - chr2L 3113542 intron toc - chr2L_7_3110001 chr2L_3110001 RAL-208 57 chr2L 3115572 3115574 chr2L 3115648 3115649 4 76 7.0 1.5 4.2 0.8 77 chr2L 3115572 intron toc - chr2L 3115610 intron toc - chr2L 3115649 intron toc - chr2L_4_3115001 chr2L_3115001 RAL-208 58 chr2L 3147285 3147307 chr2L 3147362 3147384 18 77 3.5 4.0 3.8 3.8 99 chr2L 3147285 3` UTR Mad - chr2L 3147334 3` UTR Mad - chr2L 3147384 3` UTR Mad - chr2L_18_3145001 chr2L_3145001 RAL-208 59 chr2L 3192218 3192237 chr2L 3192325 3192347 14 110 4.5 8.0 6.2 1.9 129 chr2L 3192218 exon CG34393 - chr2L 3192282 intron CG34393 - chr2L 3192347 intron CG34393 - chr2L_14_3190001 chr2L_3190001 RAL-208 60 chr2L 3251509 3251523 chr2L 3259074 3259088 springer 4 7565 3.5 5.0 4.2 0.8 7579 chr2L 3251509 intergenic not near genes chr2L 3255298 intergenic not near genes chr2L 3259088 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-208 61 chr2L 3291237 3291269 chr2L 3291317 3291349 10 80 1.5 4.5 3.0 2.5 112 chr2L 3291237 intergenic CG9664 - chr2L 3291293 3` UTR CG9664 - chr2L 3291349 3` UTR CG9664 - chr2L_10_3290001 chr2L_3290001 RAL-208 62 chr2L 3314698 3314727 chr2L 3314775 3314804 8 77 1.5 2.0 1.8 2.9 106 chr2L 3314698 intron CG3277 + chr2L 3314751 intron CG3277 + chr2L 3314804 intron CG3277 + chr2L_8_3310001 chr2L_3310001 RAL-208 63 chr2L 3384728 3384743 chr2L 3384808 3384823 5 80 0.5 1.5 1.0 2.5 95 chr2L 3384728 intergenic not near genes chr2L 3384776 intergenic not near genes chr2L 3384823 intergenic not near genes chr2L_5_3380001 chr2L_3380001 RAL-208 64 chr2L 3388600 3388627 chr2L 3388840 3388868 pogo 10 241 3.5 4.5 4.0 2.0 268 chr2L 3388600 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388868 intergenic CG42460 -,CR44791 + chr2L_10_3385001 chr2L_3385001 RAL-208 65 chr2L 3649796 3649807 chr2L 3654998 3655009 copia 4 5202 4.0 3.0 3.5 0.9 5213 chr2L 3649796 intron for - chr2L 3652402 intron for - chr2L 3655009 intron for - chr2L_4_3650001 chr2L_3650001 RAL-208 66 chr2L 3663313 3663338 chr2L 3663392 3663417 7 79 3.0 6.5 4.8 1.2 104 chr2L 3663313 intron CG34340 + chr2L 3663365 intron CG34340 + chr2L 3663417 intron CG34340 + chr2L_7_3660001 chr2L_3660001 RAL-208 67 chr2L 3686034 3686041 chr2L 3686122 3686127 4 88 8.5 1.5 5.0 0.7 93 chr2L 3686034 intron CG34340 + chr2L 3686080 intron CG34340 + chr2L 3686127 intron CG34340 + chr2L_4_3685001 chr2L_3685001 RAL-208 68 chr2L 3768569 3768578 chr2L 3768651 3768660 7 82 0.5 4.0 2.2 2.2 91 chr2L 3768569 3` UTR CG43707 + chr2L 3768614 3` UTR CG43707 + chr2L 3768660 3` UTR CG43707 + chr2L_7_3765001 chr2L_3765001 RAL-208 69 chr2L 3807821 3807827 chr2L 3807907 3807912 4 86 8.5 1.5 5.0 0.7 91 chr2L 3807821 exon Reph + chr2L 3807866 exon Reph + chr2L 3807912 exon Reph + chr2L_4_3805001 chr2L_3805001 RAL-208 70 chr2L 3836217 3836227 chr2L 3836295 3836304 8 77 8.5 6.5 7.5 0.9 87 chr2L 3836217 intergenic not near genes chr2L 3836260 intergenic not near genes chr2L 3836304 intergenic not near genes chr2L_8_3835001 chr2L_3835001 RAL-208 71 chr2L 3846468 3846495 chr2L 3846544 3846571 5 76 7.0 3.0 5.0 0.8 103 chr2L 3846468 intergenic not near genes chr2L 3846520 intergenic not near genes chr2L 3846571 intergenic not near genes chr2L_5_3845001 chr2L_3845001 RAL-208 72 chr2L 3855674 3855698 chr2L 3856144 3856168 5 470 3.0 6.0 4.5 0.9 494 chr2L 3855674 intergenic not near genes chr2L 3855921 intergenic not near genes chr2L 3856168 intergenic CR45450 - chr2L_5_3855001 chr2L_3855001 RAL-208 73 chr2L 3921789 3921815 chr2L 3922259 3922289 7 471 27.5 22.5 25.0 0.3 500 chr2L 3921789 intron fred - chr2L 3922039 intron fred - chr2L 3922289 intron fred - chr2L_7_3920001 chr2L_3920001 RAL-208 74 chr2L 3959187 3959199 chr2L 3959263 3959275 5 76 6.0 5.0 5.5 0.8 88 chr2L 3959187 intron fred - chr2L 3959231 intron fred - chr2L 3959275 intron fred - chr2L_5_3955001 chr2L_3955001 RAL-208 75 chr2L 4001659 4001684 chr2L 4001756 4001782 4 98 1.0 1.5 1.2 1.8 123 chr2L 4001659 intergenic CR45344 + chr2L 4001720 intergenic CR45344 + chr2L 4001782 intergenic CR45344 + chr2L_4_4000001 chr2L_4000001 RAL-208 76 chr2L 4017302 4017339 chr2L 4017387 4017424 17 85 2.0 3.0 2.5 4.9 122 chr2L 4017302 intergenic not near genes chr2L 4017363 intergenic not near genes chr2L 4017424 intergenic not near genes chr2L_17_4015001 chr2L_4015001 RAL-208 77 chr2L 4066045 4066063 chr2L 4068869 4068888 Juan 8 2824 7.5 7.0 7.2 1.0 2843 chr2L 4066045 intron ed + chr2L 4067466 intron ed + chr2L 4068888 intron ed + chr2L_8_4065001 chr2L_4065001 RAL-208 78 chr2L 4092172 4092201 chr2L 4092995 4093024 15 823 2.5 1.0 1.8 5.4 852 chr2L 4092172 intron ed + chr2L 4092598 intron ed + chr2L 4093024 intron ed + chr2L_15_4090001 chr2L_4090001 RAL-208 79 chr2L 4155608 4155635 chr2L 4155849 4155875 5 241 0.0 0.5 0.2 4.2 267 chr2L 4155608 intergenic not near genes chr2L 4155742 intergenic not near genes chr2L 4155875 intergenic not near genes chr2L_5_4155001 chr2L_4155001 RAL-208 80 chr2L 4166379 4166386 chr2L 4166461 4166469 5 83 4.0 0.5 2.2 1.6 90 chr2L 4166379 intergenic Or24a - chr2L 4166424 intergenic Or24a - chr2L 4166469 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-208 81 chr2L 4184494 4184503 chr2L 4184812 4184822 11 318 2.0 6.0 4.0 2.2 328 chr2L 4184494 intergenic not near genes chr2L 4184658 intergenic not near genes chr2L 4184822 intergenic not near genes chr2L_11_4180001 chr2L_4180001 RAL-208 82 chr2L 4428522 4428541 chr2L 4428825 4428847 11 305 0.5 3.0 1.8 3.9 325 chr2L 4428522 intron CG15431 - chr2L 4428684 intron CG15431 - chr2L 4428847 intron CG15431 - chr2L_11_4425001 chr2L_4425001 RAL-208 83 chr2L 4437214 4437240 chr2L 4437293 4437320 14 80 4.5 2.0 3.2 3.3 106 chr2L 4437214 intron CG15431 - chr2L 4437267 intron CG15431 - chr2L 4437320 intron CG15431 - chr2L_14_4435001 chr2L_4435001 RAL-208 84 chr2L 4575116 4575135 chr2L 4575196 4575214 9 79 3.5 2.5 3.0 2.2 98 chr2L 4575116 intron dp - chr2L 4575165 intron dp - chr2L 4575214 intron dp - chr2L_9_4575001 chr2L_4575001 RAL-208 85 chr2L 4601702 4601737 chr2L 4609143 4609178 mdg1 18 7441 1.5 3.0 2.2 5.6 7476 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_18_4605001 chr2L_4605001 RAL-208 86 chr2L 4656547 4656564 chr2L 4656625 4656642 8 78 1.5 1.5 1.5 3.2 95 chr2L 4656547 intergenic not near genes chr2L 4656594 intergenic not near genes chr2L 4656642 intergenic not near genes chr2L_8_4655001 chr2L_4655001 RAL-208 87 chr2L 4718648 4718677 chr2L 4719004 4719033 8 356 2.0 6.0 4.0 1.6 385 chr2L 4718648 intron CG34351 + chr2L 4718840 intron CG34351 + chr2L 4719033 intron CG34351 + chr2L_8_4715001 chr2L_4715001 RAL-208 88 chr2L 4741585 4741597 chr2L 4742093 4742105 4 508 2.5 4.5 3.5 0.9 520 chr2L 4741585 intron CG15630 - chr2L 4741845 intron CG15630 - chr2L 4742105 intron CG15630 - chr2L_4_4740001 chr2L_4740001 RAL-208 89 chr2L 4841073 4841101 chr2L 4841149 4841177 14 75 4.0 5.5 4.8 2.4 104 chr2L 4841073 intron CG12194 + chr2L 4841125 intron CG12194 + chr2L 4841177 exon CG12194 + chr2L_14_4840001 chr2L_4840001 RAL-208 90 chr2L 4879153 4879178 chr2L 4880387 4880412 5 1233 18.5 13.0 15.8 0.3 1259 chr2L 4879153 exon Cf2 - chr2L 4879782 intron Cf2 - chr2L 4880412 exon Cf2 - chr2L_5_4875001 chr2L_4875001 RAL-208 91 chr2L 4880420 4880452 chr2L 4881215 4881246 10 794 9.5 26.5 18.0 0.5 826 chr2L 4880420 exon Cf2 - chr2L 4880833 intron Cf2 - chr2L 4881246 exon Cf2 - chr2L_10_4880001 chr2L_4880001 RAL-208 92 chr2L 4901130 4901152 chr2L 4901232 4901254 10 102 7.5 1.5 4.5 1.8 124 chr2L 4901130 intron CG3036 + chr2L 4901192 intron CG3036 + chr2L 4901254 intron CG3036 + chr2L_10_4900001 chr2L_4900001 RAL-208 93 chr2L 4918165 4918195 chr2L 4923237 4923268 jockey 14 5073 4.0 3.5 3.8 2.9 5103 chr2L 4918165 intron hoe1 - chr2L 4920716 intron hoe1 - chr2L 4923268 intron hoe1 - chr2L_14_4920001 chr2L_4920001 RAL-208 94 chr2L 4996092 4996106 chr2L 4996169 4996183 6 77 5.5 5.0 5.2 1.0 91 chr2L 4996092 intron Rtnl1 - chr2L 4996138 intron Rtnl1 - chr2L 4996183 intron Rtnl1 - chr2L_6_4995001 chr2L_4995001 RAL-208 95 chr2L 5025135 5025144 chr2L 5025210 5025220 4 76 7.5 0.0 3.8 0.8 85 chr2L 5025135 intron vkg - chr2L 5025178 intron vkg - chr2L 5025220 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-208 96 chr2L 5120975 5121005 chr2L 5121069 5121099 11 93 4.5 1.5 3.0 2.8 124 chr2L 5120975 intron Msp300 + chr2L 5121037 intron Msp300 + chr2L 5121099 intron Msp300 + chr2L_11_5120001 chr2L_5120001 RAL-208 97 chr2L 5242871 5242899 chr2L 5243058 5243087 14 189 2.5 5.5 4.0 2.8 216 chr2L 5242871 intron tkv - chr2L 5242979 intron tkv - chr2L 5243087 intron tkv - chr2L_14_5240001 chr2L_5240001 RAL-208 98 chr2L 5342776 5342800 chr2L 5345156 5345180 Doc 9 2380 2.5 3.0 2.8 2.4 2404 chr2L 5342776 intergenic not near genes chr2L 5343978 intergenic not near genes chr2L 5345180 intergenic not near genes chr2L_9_5340001 chr2L_5340001 RAL-208 99 chr2L 5501447 5501453 chr2L 5501523 5501529 5 76 6.0 3.5 4.8 0.9 82 chr2L 5501447 intergenic not near genes chr2L 5501488 intergenic not near genes chr2L 5501529 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-208 100 chr2L 5508530 5508558 chr2L 5508606 5508634 5 76 2.0 2.0 2.0 1.7 104 chr2L 5508530 intergenic not near genes chr2L 5508582 intergenic not near genes chr2L 5508634 intergenic not near genes chr2L_5_5505001 chr2L_5505001 RAL-208 101 chr2L 5511324 5511357 chr2L 5511407 5511440 19 83 3.5 2.5 3.0 4.8 116 chr2L 5511324 intergenic not near genes chr2L 5511382 intergenic not near genes chr2L 5511440 intergenic not near genes chr2L_19_5510001 chr2L_5510001 RAL-208 102 chr2L 5584926 5584952 chr2L 5585010 5585036 12 84 1.0 2.5 1.8 4.3 110 chr2L 5584926 intergenic not near genes chr2L 5584981 intergenic not near genes chr2L 5585036 intergenic not near genes chr2L_12_5580001 chr2L_5580001 RAL-208 103 chr2L 5628217 5628223 chr2L 5628301 5628307 9 84 0.0 7.0 3.5 2.0 90 chr2L 5628217 intron CG31646 - chr2L 5628262 intron CG31646 - chr2L 5628307 intron CG31646 - chr2L_9_5625001 chr2L_5625001 RAL-208 104 chr2L 5666323 5666325 chr2L 5666413 5666415 4 90 0.0 6.5 3.2 1.0 92 chr2L 5666323 intron Hsp60C + chr2L 5666369 intron Hsp60C + chr2L 5666415 intron Hsp60C + chr2L_4_5665001 chr2L_5665001 RAL-208 105 chr2L 5813665 5813690 chr2L 5813770 5813795 11 105 1.5 4.0 2.8 2.9 130 chr2L 5813665 intergenic not near genes chr2L 5813730 intergenic not near genes chr2L 5813795 intergenic not near genes chr2L_11_5810001 chr2L_5810001 RAL-208 106 chr2L 5814693 5814712 chr2L 5814776 5814795 9 83 2.5 1.5 2.0 3.0 102 chr2L 5814693 intergenic not near genes chr2L 5814744 intergenic not near genes chr2L 5814795 intergenic not near genes chr2L_9_5810001 chr2L_5810001 RAL-208 107 chr2L 5827707 5827736 chr2L 5836715 5836744 roo 12 9007 2.5 3.0 2.8 3.2 9037 chr2L 5827707 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836744 intron TrissinR + chr2L_12_5830001 chr2L_5830001 RAL-208 108 chr2L 5887612 5887634 chr2L 5887693 5887715 13 81 3.5 5.0 4.2 2.5 103 chr2L 5887612 3` UTR CR44577 - chr2L 5887664 3` UTR CR44577 - chr2L 5887715 3` UTR CR44577 - chr2L_13_5885001 chr2L_5885001 RAL-208 109 chr2L 5926347 5926627 chr2L 5926467 5926706 17 86 7.5 0.0 3.8 3.5 359 chr2L 5926347 intron dsf + chr2L 5926526 intron dsf + chr2L 5926706 intron dsf + chr2L_17_5925001 chr2L_5925001 RAL-208 110 chr2L 5982134 5982165 chr2L 5982209 5982243 7 78 3.5 1.0 2.2 2.2 109 chr2L 5982134 intron eIF-4a + chr2L 5982188 intron eIF-4a + chr2L 5982243 intron eIF-4a + chr2L_7_5980001 chr2L_5980001 RAL-208 111 chr2L 5993333 5993348 chr2L 5993423 5993439 5 91 3.5 3.5 3.5 1.1 106 chr2L 5993333 exon lid - chr2L 5993386 intron lid - chr2L 5993439 intron lid - chr2L_5_5990001 chr2L_5990001 RAL-208 112 chr2L 6001746 6001779 chr2L 6001821 6001856 9 76 2.5 5.0 3.8 1.9 110 chr2L 6001746 3` UTR Tsp26A + chr2L 6001801 3` UTR Tsp26A + chr2L 6001856 3` UTR Tsp26A + chr2L_9_6000001 chr2L_6000001 RAL-208 113 chr2L 6050445 6050465 chr2L 6050546 6050569 8 103 4.0 2.5 3.2 1.9 124 chr2L 6050445 intergenic CG12393 +,CG9135 + chr2L 6050507 intergenic CG12393 +,CG9135 + chr2L 6050569 intergenic CG12393 +,CG9135 + chr2L_8_6050001 chr2L_6050001 RAL-208 114 chr2L 6074498 6074533 chr2L 6074575 6074611 9 77 5.0 4.0 4.5 1.6 113 chr2L 6074498 3` UTR CR43801 - chr2L 6074554 3` UTR CR43801 - chr2L 6074611 3` UTR CR43801 - chr2L_9_6070001 chr2L_6070001 RAL-208 115 chr2L 6242398 6242427 chr2L 6242477 6242504 5 77 0.5 5.5 3.0 1.2 106 chr2L 6242398 intergenic not near genes chr2L 6242451 intergenic not near genes chr2L 6242504 intergenic not near genes chr2L_5_6240001 chr2L_6240001 RAL-208 116 chr2L 6272138 6272175 chr2L 6272222 6272259 9 84 3.0 3.0 3.0 2.2 121 chr2L 6272138 intron Ddr + chr2L 6272198 intron Ddr + chr2L 6272259 intron Ddr + chr2L_9_6270001 chr2L_6270001 RAL-208 117 chr2L 6279642 6279651 chr2L 6279719 6279730 INE-1 4 78 4.0 1.5 2.8 1.1 88 chr2L 6279642 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279730 intron Ddr + chr2L_4_6275001 chr2L_6275001 RAL-208 118 chr2L 6426853 6426886 chr2L 6445113 6445146 roo 24 18260 8.0 5.0 6.5 3.2 18293 chr2L 6426853 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_24_6435001 chr2L_6435001 RAL-208 119 chr2L 6463566 6463579 chr2L 6463658 6463670 7 92 2.0 3.5 2.8 1.8 104 chr2L 6463566 exon CG16947 - chr2L 6463618 exon CG16947 - chr2L 6463670 exon CG16947 - chr2L_7_6460001 chr2L_6460001 RAL-208 120 chr2L 6537061 6537160 chr2L 6537145 6537238 4 82 0.0 0.0 0.0 4.0 177 chr2L 6537061 intron eya - chr2L 6537150 intron eya - chr2L 6537238 intron eya - chr2L_4_6535001 chr2L_6535001 RAL-208 121 chr2L 6544377 6544394 chr2L 6544469 6544486 6 92 0.0 1.5 0.8 3.3 109 chr2L 6544377 intron eya - chr2L 6544432 intron eya - chr2L 6544486 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-208 122 chr2L 6551627 6551642 chr2L 6551711 6551724 7 84 0.0 0.0 0.0 7.0 97 chr2L 6551627 intergenic CR44776 + chr2L 6551676 intergenic CR44776 + chr2L 6551724 intergenic CR44776 + chr2L_7_6550001 chr2L_6550001 RAL-208 123 chr2L 6598118 6598152 chr2L 6599075 6599109 21 957 6.0 8.0 7.0 2.6 991 chr2L 6598118 intron CG11319 - chr2L 6598614 intron CG11319 - chr2L 6599109 intron CG11319 - chr2L_21_6595001 chr2L_6595001 RAL-208 124 chr2L 6599633 6599639 chr2L 6599714 6599718 4 80 6.5 1.5 4.0 0.8 85 chr2L 6599633 intron CG11319 - chr2L 6599676 intron CG11319 - chr2L 6599718 intron CG11319 - chr2L_4_6595001 chr2L_6595001 RAL-208 125 chr2L 6626884 6626918 chr2L 6626969 6627003 15 84 4.5 5.0 4.8 2.6 119 chr2L 6626884 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6627003 intron Oatp26F - chr2L_15_6625001 chr2L_6625001 RAL-208 126 chr2L 6655530 6655547 chr2L 6655891 6655909 6 361 3.0 2.0 2.5 1.7 379 chr2L 6655530 exon CG31633 - chr2L 6655720 exon CG31633 - chr2L 6655909 exon CG31633 - chr2L_6_6655001 chr2L_6655001 RAL-208 127 chr2L 6799535 6799572 chr2L 6799623 6799660 11 88 3.0 1.0 2.0 3.7 125 chr2L 6799535 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799660 intergenic CR43610 +,CG17376 - chr2L_11_6795001 chr2L_6795001 RAL-208 128 chr2L 6850386 6850413 chr2L 6850469 6850496 12 83 1.5 4.0 2.8 3.2 110 chr2L 6850386 intergenic not near genes chr2L 6850441 intergenic not near genes chr2L 6850496 intergenic not near genes chr2L_12_6850001 chr2L_6850001 RAL-208 129 chr2L 6876787 6876810 chr2L 6882968 6883001 diver 10 6190 1.0 5.0 3.0 2.5 6214 chr2L 6876787 intron Nlg2 + chr2L 6879894 intron Nlg2 + chr2L 6883001 intron Nlg2 + chr2L_10_6875001 chr2L_6875001 RAL-208 130 chr2L 6900739 6900753 chr2L 6900833 6900847 10 94 2.5 1.0 1.8 3.6 108 chr2L 6900739 intron Nlg2 + chr2L 6900793 intron Nlg2 + chr2L 6900847 intron Nlg2 + chr2L_10_6900001 chr2L_6900001 RAL-208 131 chr2L 6950158 6950192 chr2L 6950363 6950395 14 204 2.0 1.5 1.8 5.0 237 chr2L 6950158 5` UTR Gas41 - chr2L 6950276 intergenic Gas41 -,SA + chr2L 6950395 intergenic SA +,Gas41 - chr2L_14_6950001 chr2L_6950001 RAL-208 132 chr2L 6969277 6969293 chr2L 6969356 6969371 13 79 3.0 5.5 4.2 2.5 94 chr2L 6969277 3` UTR snRNP-U1-70K - chr2L 6969324 3` UTR snRNP-U1-70K - chr2L 6969371 3` UTR snRNP-U1-70K - chr2L_13_6965001 chr2L_6965001 RAL-208 133 chr2L 7089873 7089906 chr2L 7089985 7090019 8 113 1.0 2.0 1.5 3.2 146 chr2L 7089873 intergenic not near genes chr2L 7089946 intergenic not near genes chr2L 7090019 intergenic not near genes chr2L_8_7085001 chr2L_7085001 RAL-208 134 chr2L 7125796 7125809 chr2L 7125912 7125925 4 116 1.0 3.5 2.2 1.2 129 chr2L 7125796 intron Pvf3 - chr2L 7125860 intron Pvf3 - chr2L 7125925 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-208 135 chr2L 7225244 7225273 chr2L 7225328 7225353 8 84 2.0 2.0 2.0 2.7 109 chr2L 7225244 intron Ndae1 - chr2L 7225298 intron Ndae1 - chr2L 7225353 intron Ndae1 - chr2L_8_7225001 chr2L_7225001 RAL-208 136 chr2L 7335200 7335220 chr2L 7335297 7335317 6 97 2.5 0.0 1.2 2.7 117 chr2L 7335200 intron Wnt6 + chr2L 7335258 intron Wnt6 + chr2L 7335317 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-208 137 chr2L 7337007 7337023 chr2L 7337084 7337100 7 77 2.0 3.5 2.8 1.8 93 chr2L 7337007 intron Wnt6 + chr2L 7337054 intron Wnt6 + chr2L 7337100 intron Wnt6 + chr2L_7_7335001 chr2L_7335001 RAL-208 138 chr2L 7340039 7340049 chr2L 7340118 7340128 4 79 0.0 5.0 2.5 1.1 89 chr2L 7340039 intron Wnt6 + chr2L 7340084 intron Wnt6 + chr2L 7340128 intron Wnt6 + chr2L_4_7340001 chr2L_7340001 RAL-208 139 chr2L 7343326 7343358 chr2L 7350442 7350472 roo 13 7115 7.0 0.0 3.5 2.9 7146 chr2L 7343326 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_13_7345001 chr2L_7345001 RAL-208 140 chr2L 7356178 7356201 chr2L 7356257 7356279 13 79 1.5 1.0 1.2 5.9 101 chr2L 7356178 intergenic not near genes chr2L 7356228 intergenic not near genes chr2L 7356279 intergenic not near genes chr2L_13_7355001 chr2L_7355001 RAL-208 141 chr2L 7363528 7363544 chr2L 7363604 7363622 5 78 0.5 1.5 1.0 2.5 94 chr2L 7363528 5` UTR Wnt10 + chr2L 7363575 5` UTR Wnt10 + chr2L 7363622 5` UTR Wnt10 + chr2L_5_7360001 chr2L_7360001 RAL-208 142 chr2L 7405778 7405786 chr2L 7405858 7405866 5 80 6.0 0.0 3.0 1.2 88 chr2L 7405778 intron CG5177 + chr2L 7405822 intron CG5177 + chr2L 7405866 intron CG5177 + chr2L_5_7405001 chr2L_7405001 RAL-208 143 chr2L 7436203 7436221 chr2L 7436291 7436309 8 88 6.0 2.0 4.0 1.6 106 chr2L 7436203 intergenic not near genes chr2L 7436256 intergenic not near genes chr2L 7436309 intergenic not near genes chr2L_8_7435001 chr2L_7435001 RAL-208 144 chr2L 7460730 7460753 chr2L 7460826 7460850 9 96 1.5 5.5 3.5 2.0 120 chr2L 7460730 intron Gr28b - chr2L 7460790 intron Gr28b - chr2L 7460850 intron Gr28b - chr2L_9_7460001 chr2L_7460001 RAL-208 145 chr2L 7462267 7462279 chr2L 7462483 7462495 5 216 5.5 5.5 5.5 0.8 228 chr2L 7462267 intergenic Gr28b - chr2L 7462381 intergenic Gr28b - chr2L 7462495 intergenic Gr28b - chr2L_5_7460001 chr2L_7460001 RAL-208 146 chr2L 7493677 7493699 chr2L 7493887 7493909 12 210 5.5 0.5 3.0 3.0 232 chr2L 7493677 intron Ziz - chr2L 7493793 intron Ziz - chr2L 7493909 intron Ziz - chr2L_12_7490001 chr2L_7490001 RAL-208 147 chr2L 7555221 7555233 chr2L 7555298 7555310 11 77 0.0 1.5 0.8 6.1 89 chr2L 7555221 intron RapGAP1 - chr2L 7555266 intron RapGAP1 - chr2L 7555310 intron RapGAP1 - chr2L_11_7555001 chr2L_7555001 RAL-208 148 chr2L 7567488 7567508 chr2L 7567562 7567585 6 76 3.5 3.0 3.2 1.4 97 chr2L 7567488 intron RapGAP1 - chr2L 7567536 intron RapGAP1 - chr2L 7567585 intron RapGAP1 - chr2L_6_7565001 chr2L_7565001 RAL-208 149 chr2L 7576903 7576934 chr2L 7577003 7577034 13 100 3.0 1.5 2.2 4.1 131 chr2L 7576903 intron RapGAP1 - chr2L 7576968 intron RapGAP1 - chr2L 7577034 intron RapGAP1 - chr2L_13_7575001 chr2L_7575001 RAL-208 150 chr2L 7609535 7609750 chr2L 7609630 7609827 20 80 1.5 4.0 2.8 5.3 292 chr2L 7609535 intron CG6739 + chr2L 7609681 intron CG6739 + chr2L 7609827 intron CG6739 + chr2L_20_7605001 chr2L_7605001 RAL-208 151 chr2L 7658535 7658547 chr2L 7658612 7658624 9 76 5.0 10.0 7.5 1.1 89 chr2L 7658535 intron Slob - chr2L 7658580 intron Slob - chr2L 7658624 intron Slob - chr2L_9_7655001 chr2L_7655001 RAL-208 152 chr2L 7664046 7664067 chr2L 7664142 7664164 13 96 2.5 1.0 1.8 4.6 118 chr2L 7664046 intron Slob - chr2L 7664105 intron Slob - chr2L 7664164 intron Slob - chr2L_13_7660001 chr2L_7660001 RAL-208 153 chr2L 7845293 7845322 chr2L 7845396 7845425 12 103 4.0 2.0 3.0 3.0 132 chr2L 7845293 3` UTR CG14535 - chr2L 7845359 3` UTR CG14535 - chr2L 7845425 3` UTR CG14535 - chr2L_12_7845001 chr2L_7845001 RAL-208 154 chr2L 7867574 7867600 chr2L 7867668 7867693 9 94 2.0 0.5 1.2 4.1 119 chr2L 7867574 intron Proc - chr2L 7867634 intron Proc - chr2L 7867693 intron Proc - chr2L_9_7865001 chr2L_7865001 RAL-208 155 chr2L 7922742 7922772 chr2L 7922823 7922853 10 81 4.5 3.5 4.0 2.0 111 chr2L 7922742 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922853 intron Snoo - chr2L_10_7920001 chr2L_7920001 RAL-208 156 chr2L 7959040 7959059 chr2L 7960451 7960470 pogo 11 1411 3.5 0.0 1.8 3.9 1430 chr2L 7959040 intron Snoo - chr2L 7959755 intron Snoo - chr2L 7960470 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-208 157 chr2L 8013616 8013625 chr2L 8018821 8018829 copia 8 5204 5.0 0.0 2.5 2.3 5213 chr2L 8013616 intron Tg + chr2L 8016222 intron Tg + chr2L 8018829 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-208 158 chr2L 8018825 8018834 chr2L 8023609 8023618 Doc 9 4784 0.0 6.0 3.0 2.2 4793 chr2L 8018825 intron Tg + chr2L 8021222 intron Tg + chr2L 8023618 intron Tg + chr2L_9_8020001 chr2L_8020001 RAL-208 159 chr2L 8044098 8044126 chr2L 8044177 8044205 14 79 3.0 1.0 2.0 4.7 107 chr2L 8044098 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044205 intron CG7466 + chr2L_14_8040001 chr2L_8040001 RAL-208 160 chr2L 8087978 8088002 chr2L 8088289 8088314 8 311 7.0 0.0 3.5 1.8 336 chr2L 8087978 intron Bsg + chr2L 8088146 intron Bsg + chr2L 8088314 intron Bsg + chr2L_8_8085001 chr2L_8085001 RAL-208 161 chr2L 8167162 8167176 chr2L 8167253 8167265 9 90 1.5 7.0 4.2 1.7 103 chr2L 8167162 intron Piezo + chr2L 8167214 intron Piezo + chr2L 8167265 intron Piezo + chr2L_9_8165001 chr2L_8165001 RAL-208 162 chr2L 8171280 8171468 chr2L 8171361 8171577 8 84 18.5 4.0 11.2 0.7 297 chr2L 8171280 intron Piezo + chr2L 8171428 intron Piezo + chr2L 8171577 intron Piezo + chr2L_8_8170001 chr2L_8170001 RAL-208 163 chr2L 8286302 8286324 chr2L 8286389 8286411 8 87 1.0 4.0 2.5 2.3 109 chr2L 8286302 intron Btk29A - chr2L 8286356 intron Btk29A - chr2L 8286411 intron Btk29A - chr2L_8_8285001 chr2L_8285001 RAL-208 164 chr2L 8418144 8418178 chr2L 8418243 8418277 11 99 4.0 0.5 2.2 3.4 133 chr2L 8418144 intron Akap200 + chr2L 8418210 intron Akap200 + chr2L 8418277 intron Akap200 + chr2L_11_8415001 chr2L_8415001 RAL-208 165 chr2L 8452418 8452449 chr2L 8461589 8461620 roo 15 9171 3.5 4.0 3.8 3.1 9202 chr2L 8452418 intron fu12 - chr2L 8457019 intron fu12 - chr2L 8461620 intron fu12 - chr2L_15_8455001 chr2L_8455001 RAL-208 166 chr2L 8461860 8461876 chr2L 8461941 8461957 6 81 1.0 5.0 3.0 1.5 97 chr2L 8461860 intron fu12 - chr2L 8461908 intron fu12 - chr2L 8461957 intron fu12 - chr2L_6_8460001 chr2L_8460001 RAL-208 167 chr2L 8580196 8580220 chr2L 8580277 8580301 5 81 4.5 3.5 4.0 1.0 105 chr2L 8580196 intron Sema-1a + chr2L 8580248 intron Sema-1a + chr2L 8580301 intron Sema-1a + chr2L_5_8580001 chr2L_8580001 RAL-208 168 chr2L 8723114 8723148 chr2L 8731491 8731525 Tirant 15 8377 2.5 2.5 2.5 4.3 8411 chr2L 8723114 intron raw - chr2L 8727320 intron raw - chr2L 8731525 intron raw - chr2L_15_8725001 chr2L_8725001 RAL-208 169 chr2L 8770591 8770618 chr2L 8770782 8770809 14 192 0.0 4.0 2.0 4.7 218 chr2L 8770591 exon CG9465 - chr2L 8770700 exon CG9465 - chr2L 8770809 exon CG9465 - chr2L_14_8770001 chr2L_8770001 RAL-208 170 chr2L 8788765 8788790 chr2L 8788856 8788881 5 91 0.5 4.5 2.5 1.4 116 chr2L 8788765 intergenic not near genes chr2L 8788823 intergenic not near genes chr2L 8788881 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-208 171 chr2L 8799801 8799828 chr2L 8799917 8799944 6 116 3.0 3.5 3.2 1.4 143 chr2L 8799801 intergenic not near genes chr2L 8799872 intergenic not near genes chr2L 8799944 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-208 172 chr2L 8902452 8902476 chr2L 8902599 8902623 8 146 2.5 3.0 2.8 2.1 171 chr2L 8902452 intron CG34398 + chr2L 8902538 intron CG34398 + chr2L 8902623 intron CG34398 + chr2L_8_8900001 chr2L_8900001 RAL-208 173 chr2L 8997937 8997961 chr2L 8998054 8998078 4 118 3.0 3.0 3.0 1.0 141 chr2L 8997937 exon CG18661 + chr2L 8998008 exon CG18661 + chr2L 8998078 exon CG18661 + chr2L_4_8995001 chr2L_8995001 RAL-208 174 chr2L 9000278 9000312 chr2L 9007788 9007822 roo 17 7510 2.0 1.0 1.5 6.8 7544 chr2L 9000278 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007822 intergenic not near genes chr2L_17_9000001 chr2L_9000001 RAL-208 175 chr2L 9053414 9053419 chr2L 9053649 9053654 4 235 3.5 1.5 2.5 1.1 240 chr2L 9053414 exon CG31708 - chr2L 9053534 intron CG31708 - chr2L 9053654 intron CG31708 - chr2L_4_9050001 chr2L_9050001 RAL-208 176 chr2L 9068301 9068313 chr2L 9069145 9069157 6 844 19.0 22.5 20.8 0.3 856 chr2L 9068301 intron CG31708 - chr2L 9068729 intron CG31708 - chr2L 9069157 intron CG31708 - chr2L_6_9065001 chr2L_9065001 RAL-208 177 chr2L 9114114 9114129 chr2L 9114193 9114208 9 79 3.5 6.5 5.0 1.5 94 chr2L 9114114 intergenic not near genes chr2L 9114161 intergenic not near genes chr2L 9114208 intergenic not near genes chr2L_9_9110001 chr2L_9110001 RAL-208 178 chr2L 9128579 9128604 chr2L 9128677 9128702 9 98 0.5 2.0 1.2 4.1 123 chr2L 9128579 intron CG32982 + chr2L 9128640 intron CG32982 + chr2L 9128702 intron CG32982 + chr2L_9_9125001 chr2L_9125001 RAL-208 179 chr2L 9259215 9259244 chr2L 9259307 9259337 5 93 2.0 2.5 2.2 1.6 122 chr2L 9259215 intron Ggamma30A + chr2L 9259276 intron Ggamma30A + chr2L 9259337 intron Ggamma30A + chr2L_5_9255001 chr2L_9255001 RAL-208 180 chr2L 9285024 9285047 chr2L 9285100 9285123 5 75 4.0 2.5 3.2 1.2 99 chr2L 9285024 intron Ggamma30A + chr2L 9285074 intron Ggamma30A + chr2L 9285123 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-208 181 chr2L 9297378 9297403 chr2L 9297455 9297478 11 77 2.5 6.5 4.5 2.0 100 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297478 3` UTR Ggamma30A + chr2L_11_9295001 chr2L_9295001 RAL-208 182 chr2L 9304505 9304520 chr2L 9304584 9304599 8 79 3.0 4.5 3.8 1.7 94 chr2L 9304505 3` UTR CR42844 - chr2L 9304552 3` UTR CR42844 - chr2L 9304599 3` UTR CR42844 - chr2L_8_9300001 chr2L_9300001 RAL-208 183 chr2L 9317427 9317562 chr2L 9317545 9317839 8 197 0.0 0.0 0.0 8.0 412 chr2L 9317427 intergenic not near genes chr2L 9317633 intergenic not near genes chr2L 9317839 intergenic not near genes chr2L_8_9315001 chr2L_9315001 RAL-208 184 chr2L 9321734 9321746 chr2L 9321810 9321822 4 76 4.5 3.5 4.0 0.8 88 chr2L 9321734 intergenic not near genes chr2L 9321778 intergenic not near genes chr2L 9321822 intergenic not near genes chr2L_4_9320001 chr2L_9320001 RAL-208 185 chr2L 9385117 9385150 chr2L 9385207 9385240 20 90 2.5 2.5 2.5 5.7 123 chr2L 9385117 intron Shawl - chr2L 9385178 intron Shawl - chr2L 9385240 intron Shawl - chr2L_20_9385001 chr2L_9385001 RAL-208 186 chr2L 9393499 9393528 chr2L 9396466 9396495 jockey 9 2967 2.5 5.0 3.8 1.9 2996 chr2L 9393499 intron Shawl - chr2L 9394997 intron Shawl - chr2L 9396495 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-208 187 chr2L 9454978 9454998 chr2L 9455080 9455100 6 102 5.0 2.0 3.5 1.3 122 chr2L 9454978 intron numb + chr2L 9455039 intron numb + chr2L 9455100 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-208 188 chr2L 9457509 9457513 chr2L 11369260 11369260 4 1911750 19.0 22.5 20.8 0.2 1911751 chr2L 9457509 intron numb + chr2L 10413384 exon CG5355 - chr2L 11369260 intron salr + chr2L_4_10410001 chr2L_10410001 RAL-208 189 chr2L 9470104 9470123 chr2L 9470183 9470202 10 79 1.0 3.5 2.2 3.1 98 chr2L 9470104 intergenic CR43769 + chr2L 9470153 intergenic CR43769 + chr2L 9470202 intergenic CR43769 + chr2L_10_9470001 chr2L_9470001 RAL-208 190 chr2L 9493248 9493271 chr2L 9493332 9493355 9 83 1.5 1.5 1.5 3.6 107 chr2L 9493248 intron Gdi - chr2L 9493302 intron Gdi - chr2L 9493355 intron Gdi - chr2L_9_9490001 chr2L_9490001 RAL-208 191 chr2L 9506428 9506442 chr2L 9506578 9506592 4 150 4.5 1.5 3.0 1.0 164 chr2L 9506428 intron CG33298 + chr2L 9506510 intron CG33298 + chr2L 9506592 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-208 192 chr2L 9543761 9543782 chr2L 9543837 9543859 6 77 3.5 1.5 2.5 1.7 98 chr2L 9543761 intergenic Cpr30B +,CG13113 + chr2L 9543810 intergenic Cpr30B +,CG13113 + chr2L 9543859 intergenic Cpr30B +,CG13113 + chr2L_6_9540001 chr2L_9540001 RAL-208 193 chr2L 9837432 9837442 chr2L 9837510 9837520 4 78 2.5 3.0 2.8 1.1 88 chr2L 9837432 intron nAChRalpha6 - chr2L 9837476 intron nAChRalpha6 - chr2L 9837520 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-208 194 chr2L 9873760 9873790 chr2L 9873856 9873886 11 96 3.0 1.5 2.2 3.4 126 chr2L 9873760 intron nAChRalpha6 - chr2L 9873823 intron nAChRalpha6 - chr2L 9873886 intron nAChRalpha6 - chr2L_11_9870001 chr2L_9870001 RAL-208 195 chr2L 9943365 9943385 chr2L 9943443 9943465 12 80 1.0 4.5 2.8 3.2 100 chr2L 9943365 intron CG5853 - chr2L 9943415 intron CG5853 - chr2L 9943465 intron CG5853 - chr2L_12_9940001 chr2L_9940001 RAL-208 196 chr2L 9960338 9960370 chr2L 9960435 9960467 9 97 3.0 1.5 2.2 2.8 129 chr2L 9960338 3` UTR CG5850 - chr2L 9960402 3` UTR CG5850 - chr2L 9960467 3` UTR CG5850 - chr2L_9_9960001 chr2L_9960001 RAL-208 197 chr2L 9973725 9973757 chr2L 9980843 9980875 HMS-Beagle 7 7119 4.0 5.0 4.5 1.3 7150 chr2L 9973725 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-208 198 chr2L 9982202 9982228 chr2L 9982305 9982331 9 103 0.0 2.5 1.2 4.1 129 chr2L 9982202 intergenic not near genes chr2L 9982266 intergenic not near genes chr2L 9982331 intergenic not near genes chr2L_9_9980001 chr2L_9980001 RAL-208 199 chr2L 9986365 9986382 chr2L 9986460 9986477 9 95 3.0 7.0 5.0 1.5 112 chr2L 9986365 intron bib + chr2L 9986421 intron bib + chr2L 9986477 intron bib + chr2L_9_9985001 chr2L_9985001 RAL-208 200 chr2L 9994722 9994747 chr2L 9994828 9994853 7 105 1.5 2.5 2.0 2.3 131 chr2L 9994722 exon bib + chr2L 9994788 3` UTR bib + chr2L 9994853 3` UTR bib + chr2L_7_9990001 chr2L_9990001 RAL-208 201 chr2L 10032097 10032117 chr2L 10032182 10032202 9 85 6.0 3.0 4.5 1.6 105 chr2L 10032097 intergenic not near genes chr2L 10032150 intergenic not near genes chr2L 10032202 intergenic obst-B + chr2L_9_10030001 chr2L_10030001 RAL-208 202 chr2L 10051733 10051753 chr2L 10051818 10051838 4 84 1.0 0.5 0.8 2.2 105 chr2L 10051733 5` UTR CR44874 + chr2L 10051786 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-208 203 chr2L 10057150 10057158 chr2L 10057620 10057625 4 469 20.5 16.0 18.2 0.2 475 chr2L 10057150 5` UTR Pen + chr2L 10057388 intron Pen + chr2L 10057625 5` UTR Pen + chr2L_4_10055001 chr2L_10055001 RAL-208 204 chr2L 10087476 10087484 chr2L 10087553 10087561 7 76 3.0 3.0 3.0 1.8 85 chr2L 10087476 intron CG44153 - chr2L 10087518 intron CG44153 - chr2L 10087561 intron CG44153 - chr2L_7_10085001 chr2L_10085001 RAL-208 205 chr2L 10095637 10095664 chr2L 10095717 10095742 6 80 1.0 3.0 2.0 2.0 105 chr2L 10095637 intron CG44153 - chr2L 10095690 intron CG44153 - chr2L 10095742 intron CG44153 - chr2L_6_10095001 chr2L_10095001 RAL-208 206 chr2L 10105279 10105312 chr2L 10105355 10105388 10 76 3.0 3.5 3.2 2.4 109 chr2L 10105279 intron,intron CG44153 -,CG34109 + chr2L 10105334 intron,intron CG44153 -,CG34109 + chr2L 10105388 intron,intron CG44153 -,CG34109 + chr2L_10_10105001 chr2L_10105001 RAL-208 207 chr2L 10131291 10131321 chr2L 10131382 10131412 10 91 2.5 0.5 1.5 4.0 121 chr2L 10131291 intron CG44153 - chr2L 10131352 intron CG44153 - chr2L 10131412 intron CG44153 - chr2L_10_10130001 chr2L_10130001 RAL-208 208 chr2L 10156321 10156353 chr2L 10163791 10163823 blood 7 7470 3.0 1.0 2.0 2.3 7502 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163823 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-208 209 chr2L 10232908 10232938 chr2L 10232986 10233016 13 78 6.0 2.0 4.0 2.6 108 chr2L 10232908 intron eEF1delta + chr2L 10232962 intron eEF1delta + chr2L 10233016 intron eEF1delta + chr2L_13_10230001 chr2L_10230001 RAL-208 210 chr2L 10281684 10281686 chr2L 10281790 10281792 4 106 0.0 3.0 1.5 1.6 108 chr2L 10281684 intergenic CG5604 - chr2L 10281738 intergenic CG5604 - chr2L 10281792 intergenic CG5604 - chr2L_4_10280001 chr2L_10280001 RAL-208 211 chr2L 10294178 10294195 chr2L 10294254 10294271 5 76 2.5 3.5 3.0 1.2 93 chr2L 10294178 intron Hand - chr2L 10294224 intron Hand - chr2L 10294271 intron Hand - chr2L_5_10290001 chr2L_10290001 RAL-208 212 chr2L 10387589 10387595 chr2L 10387685 10387691 6 96 2.0 1.5 1.8 2.1 102 chr2L 10387589 3` UTR mRpS7 + chr2L 10387640 3` UTR mRpS7 + chr2L 10387691 intergenic mRpS7 +,da + chr2L_6_10385001 chr2L_10385001 RAL-208 213 chr2L 10474384 10474393 chr2L 10474465 10474470 5 80 5.0 0.5 2.8 1.3 86 chr2L 10474384 intergenic RluA-1 - chr2L 10474427 intergenic RluA-1 - chr2L 10474470 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-208 214 chr2L 10478527 10478553 chr2L 10478609 10478636 14 82 3.0 2.0 2.5 4.0 109 chr2L 10478527 intron RluA-2 + chr2L 10478582 intron RluA-2 + chr2L 10478636 intron RluA-2 + chr2L_14_10475001 chr2L_10475001 RAL-208 215 chr2L 10495313 10495314 chr2L 10495390 10495391 4 77 7.0 0.5 3.8 0.8 78 chr2L 10495313 intron Myo31DF - chr2L 10495352 intron Myo31DF - chr2L 10495391 intron Myo31DF - chr2L_4_10495001 chr2L_10495001 RAL-208 216 chr2L 10495315 10495464 chr2L 10495388 10495550 25 85 0.0 0.5 0.2 20.8 235 chr2L 10495315 intron Myo31DF - chr2L 10495432 intron Myo31DF - chr2L 10495550 intron Myo31DF - chr2L_25_10495001 chr2L_10495001 RAL-208 217 chr2L 10515359 10515382 chr2L 10515452 10515475 4 93 2.5 0.5 1.5 1.6 116 chr2L 10515359 intron,intron CG45083 -,Fatp - chr2L 10515417 intron,intron CG45083 -,Fatp - chr2L 10515475 intron,intron CG45083 -,Fatp - chr2L_4_10515001 chr2L_10515001 RAL-208 218 chr2L 10531616 10531643 chr2L 10531708 10531735 6 92 0.0 2.5 1.2 2.7 119 chr2L 10531616 3` UTR Lip4 + chr2L 10531676 3` UTR Lip4 + chr2L 10531735 3` UTR Lip4 + chr2L_6_10530001 chr2L_10530001 RAL-208 219 chr2L 10580690 10580717 chr2L 10580763 10580793 9 76 4.5 1.5 3.0 2.2 103 chr2L 10580690 intron Trim9 + chr2L 10580742 intron Trim9 + chr2L 10580793 intron Trim9 + chr2L_9_10580001 chr2L_10580001 RAL-208 220 chr2L 10592843 10592875 chr2L 10600505 10600537 opus 10 7662 1.5 1.5 1.5 4.0 7694 chr2L 10592843 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600537 intron Trim9 + chr2L_10_10595001 chr2L_10595001 RAL-208 221 chr2L 10616031 10616062 chr2L 10616110 10616138 8 78 3.0 0.0 1.5 3.2 107 chr2L 10616031 intron Trim9 + chr2L 10616084 intron Trim9 + chr2L 10616138 intron Trim9 + chr2L_8_10615001 chr2L_10615001 RAL-208 222 chr2L 10633153 10633185 chr2L 10633243 10633275 17 90 1.5 3.0 2.2 5.3 122 chr2L 10633153 intron CG7329 - chr2L 10633214 intron CG7329 - chr2L 10633275 intron CG7329 - chr2L_17_10630001 chr2L_10630001 RAL-208 223 chr2L 10633658 10633684 chr2L 10633975 10633999 9 316 3.0 1.0 2.0 3.0 341 chr2L 10633658 intron CG7329 - chr2L 10633828 intron CG7329 - chr2L 10633999 intron CG7329 - chr2L_9_10630001 chr2L_10630001 RAL-208 224 chr2L 10647677 10647683 chr2L 10648117 10648122 5 439 22.0 19.0 20.5 0.2 445 chr2L 10647677 exon CG17097 + chr2L 10647900 exon CG17097 + chr2L 10648122 exon CG17097 + chr2L_5_10645001 chr2L_10645001 RAL-208 225 chr2L 10650016 10650035 chr2L 10650096 10650114 6 80 2.0 0.0 1.0 3.0 98 chr2L 10650016 exon CG17097 + chr2L 10650065 3` UTR CG17097 + chr2L 10650114 3` UTR CG17097 + chr2L_6_10650001 chr2L_10650001 RAL-208 226 chr2L 10688557 10688573 chr2L 10688631 10688649 7 75 0.5 3.5 2.0 2.3 92 chr2L 10688557 intergenic CG7294 - chr2L 10688603 intergenic CG7294 - chr2L 10688649 intergenic CG7294 - chr2L_7_10685001 chr2L_10685001 RAL-208 227 chr2L 10793316 10793348 chr2L 10793393 10793425 13 77 1.5 3.5 2.5 3.7 109 chr2L 10793316 intron CG31869 - chr2L 10793370 intron CG31869 - chr2L 10793425 intron CG31869 - chr2L_13_10790001 chr2L_10790001 RAL-208 228 chr2L 10803774 10803805 chr2L 10803859 10803891 12 86 2.0 1.5 1.8 4.3 117 chr2L 10803774 intergenic Nos - chr2L 10803832 intergenic Nos - chr2L 10803891 intergenic Nos - chr2L_12_10800001 chr2L_10800001 RAL-208 229 chr2L 10852179 10852181 chr2L 10852268 10852270 4 89 7.0 5.0 6.0 0.6 91 chr2L 10852179 intron CG43129 + chr2L 10852224 intron CG43129 + chr2L 10852270 intron CG43129 + chr2L_4_10850001 chr2L_10850001 RAL-208 230 chr2L 10862847 10862874 chr2L 10864461 10864488 Rt1c 8 1614 2.5 7.0 4.8 1.4 1641 chr2L 10862847 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864488 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-208 231 chr2L 10946952 10946977 chr2L 10956167 10956192 roo 12 9214 2.0 8.5 5.2 1.9 9240 chr2L 10946952 intron dpr2 - chr2L 10951572 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_12_10950001 chr2L_10950001 RAL-208 232 chr2L 10986932 10986959 chr2L 10987015 10987042 9 84 3.0 1.0 2.0 3.0 110 chr2L 10986932 intron piwi - chr2L 10986987 intron piwi - chr2L 10987042 intron piwi - chr2L_9_10985001 chr2L_10985001 RAL-208 233 chr2L 11056071 11056095 chr2L 11056162 11056186 15 91 1.5 2.5 2.0 5.0 115 chr2L 11056071 intron Samuel - chr2L 11056128 intron Samuel - chr2L 11056186 intron Samuel - chr2L_15_11055001 chr2L_11055001 RAL-208 234 chr2L 11056569 11056594 chr2L 11056651 11056676 7 82 5.0 3.0 4.0 1.4 107 chr2L 11056569 intron Samuel - chr2L 11056622 intron Samuel - chr2L 11056676 intron Samuel - chr2L_7_11055001 chr2L_11055001 RAL-208 235 chr2L 11142514 11142538 chr2L 11142596 11142618 5 82 3.0 2.5 2.8 1.3 104 chr2L 11142514 intron Gyc32E - chr2L 11142566 intron Gyc32E - chr2L 11142618 intron Gyc32E - chr2L_5_11140001 chr2L_11140001 RAL-208 236 chr2L 11145702 11145728 chr2L 11145840 11145865 5 138 6.0 4.0 5.0 0.8 163 chr2L 11145702 intron Gyc32E - chr2L 11145784 intron Gyc32E - chr2L 11145865 intron Gyc32E - chr2L_5_11145001 chr2L_11145001 RAL-208 237 chr2L 11150073 11150102 chr2L 11150150 11150178 9 77 4.5 2.0 3.2 2.1 105 chr2L 11150073 intergenic not near genes chr2L 11150126 intergenic not near genes chr2L 11150178 intergenic not near genes chr2L_9_11150001 chr2L_11150001 RAL-208 238 chr2L 11312333 11312362 chr2L 11312416 11312445 17 83 4.5 2.0 3.2 4.0 112 chr2L 11312333 intergenic not near genes chr2L 11312389 intergenic not near genes chr2L 11312445 intergenic not near genes chr2L_17_11310001 chr2L_11310001 RAL-208 239 chr2L 11313110 11313129 chr2L 11313188 11313206 11 78 2.0 3.0 2.5 3.1 96 chr2L 11313110 intergenic not near genes chr2L 11313158 intergenic not near genes chr2L 11313206 intergenic not near genes chr2L_11_11310001 chr2L_11310001 RAL-208 240 chr2L 11444268 11444285 chr2L 11444348 11444365 8 80 1.5 4.5 3.0 2.0 97 chr2L 11444268 intron salm - chr2L 11444316 intron salm - chr2L 11444365 intron salm - chr2L_8_11440001 chr2L_11440001 RAL-208 241 chr2L 11491127 11491160 chr2L 11491208 11491241 6 81 1.0 3.0 2.0 2.0 114 chr2L 11491127 intergenic not near genes chr2L 11491184 intergenic not near genes chr2L 11491241 intergenic not near genes chr2L_6_11490001 chr2L_11490001 RAL-208 242 chr2L 11563642 11563651 chr2L 11568846 11568851 copia 6 5203 6.5 8.0 7.2 0.7 5209 chr2L 11563642 intergenic not near genes chr2L 11566246 intergenic not near genes chr2L 11568851 intergenic not near genes chr2L_6_11565001 chr2L_11565001 RAL-208 243 chr2L 11585236 11585237 chr2L 11585312 11585313 6 76 0.0 13.5 6.8 0.8 77 chr2L 11585236 intron kek2 + chr2L 11585274 intron kek2 + chr2L 11585313 intron kek2 + chr2L_6_11585001 chr2L_11585001 RAL-208 244 chr2L 11614055 11614084 chr2L 11615550 11615579 hopper2 11 1494 2.0 4.0 3.0 2.8 1524 chr2L 11614055 intron kek2 + chr2L 11614817 intron kek2 + chr2L 11615579 intron kek2 + chr2L_11_11610001 chr2L_11610001 RAL-208 245 chr2L 11633166 11633199 chr2L 11633268 11633300 7 102 0.5 2.0 1.2 3.2 134 chr2L 11633166 intergenic not near genes chr2L 11633233 intergenic not near genes chr2L 11633300 intergenic not near genes chr2L_7_11630001 chr2L_11630001 RAL-208 246 chr2L 11672140 11672158 chr2L 11672247 11672265 7 106 5.0 4.0 4.5 1.3 125 chr2L 11672140 intergenic not near genes chr2L 11672202 intergenic not near genes chr2L 11672265 intergenic not near genes chr2L_7_11670001 chr2L_11670001 RAL-208 247 chr2L 11684393 11684416 chr2L 11684628 11684645 4 234 1.0 0.0 0.5 2.7 252 chr2L 11684393 intergenic not near genes chr2L 11684519 intergenic not near genes chr2L 11684645 intergenic not near genes chr2L_4_11680001 chr2L_11680001 RAL-208 248 chr2L 11713507 11713534 chr2L 11720975 11721002 blood 9 7468 3.5 3.0 3.2 2.1 7495 chr2L 11713507 intergenic not near genes chr2L 11717254 intergenic not near genes chr2L 11721002 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-208 249 chr2L 11750332 11750338 chr2L 11750618 11750624 6 286 2.0 2.5 2.2 1.9 292 chr2L 11750332 intergenic not near genes chr2L 11750478 intergenic not near genes chr2L 11750624 intergenic not near genes chr2L_6_11750001 chr2L_11750001 RAL-208 250 chr2L 11781035 11781194 chr2L 11781119 11781270 4 78 0.0 0.0 0.0 4.0 235 chr2L 11781035 intergenic not near genes chr2L 11781152 intergenic not near genes chr2L 11781270 intergenic not near genes chr2L_4_11780001 chr2L_11780001 RAL-208 251 chr2L 11841349 11841356 chr2L 11841446 11841453 5 96 3.0 0.0 1.5 2.0 104 chr2L 11841349 intron Pde1c - chr2L 11841401 intron Pde1c - chr2L 11841453 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-208 252 chr2L 11888083 11888109 chr2L 11888287 11888314 16 206 4.5 3.5 4.0 3.2 231 chr2L 11888083 intron Pde1c - chr2L 11888198 intron Pde1c - chr2L 11888314 intron Pde1c - chr2L_16_11885001 chr2L_11885001 RAL-208 253 chr2L 11913297 11913321 chr2L 11913398 11913422 15 101 4.0 2.0 3.0 3.8 125 chr2L 11913297 intron Pde1c - chr2L 11913360 intron Pde1c - chr2L 11913422 intron Pde1c - chr2L_15_11910001 chr2L_11910001 RAL-208 254 chr2L 12153936 12153949 chr2L 12154012 12154026 8 77 3.5 1.5 2.5 2.3 90 chr2L 12153936 exon CG31760 + chr2L 12153981 intron CG31760 + chr2L 12154026 intron CG31760 + chr2L_8_12150001 chr2L_12150001 RAL-208 255 chr2L 12272170 12272191 chr2L 12272246 12272267 9 76 3.5 5.0 4.2 1.7 97 chr2L 12272170 intron aret + chr2L 12272218 intron aret + chr2L 12272267 intron aret + chr2L_9_12270001 chr2L_12270001 RAL-208 256 chr2L 12293561 12293595 chr2L 12293658 12293692 17 97 2.0 5.5 3.8 3.5 131 chr2L 12293561 intron aret + chr2L 12293626 intron aret + chr2L 12293692 intron aret + chr2L_17_12290001 chr2L_12290001 RAL-208 257 chr2L 12294264 12294276 chr2L 12294346 12294358 6 82 3.0 0.0 1.5 2.4 94 chr2L 12294264 intron aret + chr2L 12294311 intron aret + chr2L 12294358 intron aret + chr2L_6_12290001 chr2L_12290001 RAL-208 258 chr2L 12305422 12305434 chr2L 12305510 12305522 7 88 5.5 4.5 5.0 1.2 100 chr2L 12305422 intron aret + chr2L 12305472 intron aret + chr2L 12305522 intron aret + chr2L_7_12305001 chr2L_12305001 RAL-208 259 chr2L 12323764 12323768 chr2L 12323865 12323869 4 101 0.0 3.0 1.5 1.6 105 chr2L 12323764 intergenic not near genes chr2L 12323816 intergenic not near genes chr2L 12323869 intergenic not near genes chr2L_4_12320001 chr2L_12320001 RAL-208 260 chr2L 12366864 12366891 chr2L 12366950 12366977 11 86 1.0 3.0 2.0 3.7 113 chr2L 12366864 intron bru-2 + chr2L 12366920 intron bru-2 + chr2L 12366977 intron bru-2 + chr2L_11_12365001 chr2L_12365001 RAL-208 261 chr2L 12374993 12374994 chr2L 13098622 13098623 5 723629 11.0 8.0 9.5 0.5 723630 chr2L 12374993 intron bru-2 + chr2L 12736808 intron MRP + chr2L 13098623 intergenic not near genes chr2L_5_12735001 chr2L_12735001 RAL-208 262 chr2L 12487887 12487918 chr2L 12487968 12487999 18 81 7.5 1.5 4.5 3.3 112 chr2L 12487887 intron bun - chr2L 12487943 intron bun - chr2L 12487999 intron bun - chr2L_18_12485001 chr2L_12485001 RAL-208 263 chr2L 12529245 12529444 chr2L 12529376 12529520 12 90 1.5 0.5 1.0 6.0 275 chr2L 12529245 intron bun - chr2L 12529382 intron bun - chr2L 12529520 intron bun - chr2L_12_12525001 chr2L_12525001 RAL-208 264 chr2L 12558326 12558351 chr2L 12565455 12565478 HMS-Beagle 17 7129 4.0 4.0 4.0 3.4 7152 chr2L 12558326 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565478 intergenic not near genes chr2L_17_12560001 chr2L_12560001 RAL-208 265 chr2L 12598987 12598993 chr2L 12599069 12599075 4 82 0.0 5.0 2.5 1.1 88 chr2L 12598987 intron nub + chr2L 12599031 intron nub + chr2L 12599075 intron nub + chr2L_4_12595001 chr2L_12595001 RAL-208 266 chr2L 12653788 12653812 chr2L 12653905 12653929 7 117 3.5 2.5 3.0 1.8 141 chr2L 12653788 intergenic not near genes chr2L 12653858 intergenic not near genes chr2L 12653929 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-208 267 chr2L 12677715 12677730 chr2L 12677801 12677816 4 86 2.0 4.0 3.0 1.0 101 chr2L 12677715 intron pdm2 + chr2L 12677766 intron pdm2 + chr2L 12677816 intron pdm2 + chr2L_4_12675001 chr2L_12675001 RAL-208 268 chr2L 12728929 12728936 chr2L 12729169 12729176 pogo 4 240 3.5 1.5 2.5 1.1 247 chr2L 12728929 intron MRP + chr2L 12729052 intron MRP + chr2L 12729176 intron MRP + chr2L_4_12725001 chr2L_12725001 RAL-208 269 chr2L 12731054 12731087 chr2L 12735820 12735854 F-element 9 4767 4.0 1.5 2.8 2.4 4800 chr2L 12731054 intron MRP + chr2L 12733454 intron MRP + chr2L 12735854 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-208 270 chr2L 12739172 12739205 chr2L 12743953 12743985 Doc 14 4781 0.5 5.0 2.8 3.7 4813 chr2L 12739172 exon MRP + chr2L 12741578 intron MRP + chr2L 12743985 exon MRP + chr2L_14_12740001 chr2L_12740001 RAL-208 271 chr2L 12751309 12751335 chr2L 12751392 12751418 8 83 2.0 3.5 2.8 2.1 109 chr2L 12751309 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751418 intergenic not near genes chr2L_8_12750001 chr2L_12750001 RAL-208 272 chr2L 12763165 12763196 chr2L 12763256 12763287 9 91 4.0 1.0 2.5 2.6 122 chr2L 12763165 intergenic not near genes chr2L 12763226 intergenic not near genes chr2L 12763287 intergenic not near genes chr2L_9_12760001 chr2L_12760001 RAL-208 273 chr2L 12763863 12763871 chr2L 12764063 12764071 BS 6 200 0.0 1.5 0.8 3.3 208 chr2L 12763863 intergenic not near genes chr2L 12763967 intergenic not near genes chr2L 12764071 intergenic not near genes chr2L_6_12760001 chr2L_12760001 RAL-208 274 chr2L 12791603 12791626 chr2L 12795278 12795301 F-element 9 3674 7.5 8.0 7.8 1.0 3698 chr2L 12791603 intergenic not near genes chr2L 12793452 intergenic not near genes chr2L 12795301 intergenic not near genes chr2L_9_12790001 chr2L_12790001 RAL-208 275 chr2L 12855296 12855326 chr2L 12855381 12855411 7 85 0.0 2.0 1.0 3.5 115 chr2L 12855296 intergenic not near genes chr2L 12855354 intergenic not near genes chr2L 12855411 intergenic not near genes chr2L_7_12855001 chr2L_12855001 RAL-208 276 chr2L 12861703 12861730 chr2L 12863170 12863197 hobo 14 1467 3.5 4.5 4.0 2.8 1494 chr2L 12861703 intergenic not near genes chr2L 12862450 intergenic not near genes chr2L 12863197 intergenic not near genes chr2L_14_12860001 chr2L_12860001 RAL-208 277 chr2L 12870273 12870300 chr2L 12870575 12870602 8 302 3.0 0.5 1.8 2.9 329 chr2L 12870273 intergenic not near genes chr2L 12870438 intergenic not near genes chr2L 12870602 intergenic not near genes chr2L_8_12870001 chr2L_12870001 RAL-208 278 chr2L 12894024 12894038 chr2L 12895488 12895505 hobo 4 1466 2.5 2.0 2.2 1.2 1481 chr2L 12894024 intergenic not near genes chr2L 12894764 intergenic not near genes chr2L 12895505 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-208 279 chr2L 12933851 12933880 chr2L 12941317 12941347 blood 6 7466 0.5 2.0 1.2 2.7 7496 chr2L 12933851 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941347 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-208 280 chr2L 12945975 12945998 chr2L 12946055 12946078 10 80 5.0 2.0 3.5 2.2 103 chr2L 12945975 intergenic not near genes chr2L 12946026 intergenic not near genes chr2L 12946078 intergenic not near genes chr2L_10_12945001 chr2L_12945001 RAL-208 281 chr2L 12963799 12963825 chr2L 12963901 12963927 8 102 0.5 4.0 2.2 2.5 128 chr2L 12963799 intergenic not near genes chr2L 12963863 intergenic not near genes chr2L 12963927 intergenic not near genes chr2L_8_12960001 chr2L_12960001 RAL-208 282 chr2L 13136803 13136834 chr2L 13136896 13136926 9 93 2.0 4.0 3.0 2.2 123 chr2L 13136803 intergenic not near genes chr2L 13136864 intergenic not near genes chr2L 13136926 intergenic not near genes chr2L_9_13135001 chr2L_13135001 RAL-208 283 chr2L 13147946 13147959 chr2L 13148027 13148040 7 81 2.5 2.5 2.5 2.0 94 chr2L 13147946 intergenic not near genes chr2L 13147993 intergenic not near genes chr2L 13148040 intergenic not near genes chr2L_7_13145001 chr2L_13145001 RAL-208 284 chr2L 13152240 13152257 chr2L 13152318 13152335 7 78 4.5 5.5 5.0 1.2 95 chr2L 13152240 intergenic not near genes chr2L 13152288 intergenic not near genes chr2L 13152335 intergenic not near genes chr2L_7_13150001 chr2L_13150001 RAL-208 285 chr2L 13154110 13154122 chr2L 13154188 13154200 4 78 1.5 1.0 1.2 1.8 90 chr2L 13154110 intergenic not near genes chr2L 13154155 intergenic not near genes chr2L 13154200 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-208 286 chr2L 13185322 13185345 chr2L 13185401 13185424 10 79 3.5 4.5 4.0 2.0 102 chr2L 13185322 3` UTR CG16974 - chr2L 13185373 3` UTR CG16974 - chr2L 13185424 exon CG16974 - chr2L_10_13185001 chr2L_13185001 RAL-208 287 chr2L 13207574 13207604 chr2L 13207711 13207742 4 138 0.5 0.5 0.5 2.7 168 chr2L 13207574 intron Pect + chr2L 13207658 intron Pect + chr2L 13207742 intron Pect + chr2L_4_13205001 chr2L_13205001 RAL-208 288 chr2L 13355199 13355231 chr2L 13355274 13355307 7 76 0.0 0.5 0.2 5.8 108 chr2L 13355199 intergenic CG9395 - chr2L 13355253 intergenic CG9395 - chr2L 13355307 intergenic CG9395 - chr2L_7_13355001 chr2L_13355001 RAL-208 289 chr2L 13405671 13405682 chr2L 13410468 13410479 Doc 5 4797 1.0 5.0 3.0 1.2 4808 chr2L 13405671 exon CG7110 + chr2L 13408075 intron CG7110 + chr2L 13410479 intron CG7110 + chr2L_5_13405001 chr2L_13405001 RAL-208 290 chr2L 13449461 13449488 chr2L 13456897 13456924 Quasimodo 9 7436 4.0 4.0 4.0 1.8 7463 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453192 intron CG42784 + chr2L 13456924 intron CG42784 + chr2L_9_13450001 chr2L_13450001 RAL-208 291 chr2L 13481454 13481472 chr2L 13482061 13482079 jockey 10 607 2.0 6.0 4.0 2.0 625 chr2L 13481454 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_10_13480001 chr2L_13480001 RAL-208 292 chr2L 13522135 13522164 chr2L 13527653 13527681 Transpac 6 5518 0.5 1.5 1.0 3.0 5546 chr2L 13522135 intron B4 - chr2L 13524908 intron B4 - chr2L 13527681 intron B4 - chr2L_6_13520001 chr2L_13520001 RAL-208 293 chr2L 13557376 13557394 chr2L 13557471 13557489 6 95 3.5 2.5 3.0 1.5 113 chr2L 13557376 intron kuz + chr2L 13557432 intron kuz + chr2L 13557489 intron kuz + chr2L_6_13555001 chr2L_13555001 RAL-208 294 chr2L 13560401 13560415 chr2L 13565222 13565236 F-element 5 4821 8.5 4.0 6.2 0.7 4835 chr2L 13560401 intron kuz + chr2L 13562818 intron kuz + chr2L 13565236 intron kuz + chr2L_5_13560001 chr2L_13560001 RAL-208 295 chr2L 13574688 13574704 chr2L 13574767 13574783 5 79 3.0 2.5 2.8 1.3 95 chr2L 13574688 intron kuz + chr2L 13574736 intron kuz + chr2L 13574783 intron kuz + chr2L_5_13570001 chr2L_13570001 RAL-208 296 chr2L 13622140 13622163 chr2L 13622239 13622262 10 98 0.5 0.0 0.2 8.3 122 chr2L 13622140 intron kuz + chr2L 13622201 intron kuz + chr2L 13622262 intron kuz + chr2L_10_13620001 chr2L_13620001 RAL-208 297 chr2L 13630262 13630294 chr2L 13630358 13630390 7 96 0.5 3.0 1.8 2.5 128 chr2L 13630262 intron kuz + chr2L 13630326 intron kuz + chr2L 13630390 intron kuz + chr2L_7_13630001 chr2L_13630001 RAL-208 298 chr2L 13720237 13720247 chr2L 13720325 13720335 5 88 2.0 0.5 1.2 2.3 98 chr2L 13720237 intergenic not near genes chr2L 13720286 intergenic not near genes chr2L 13720335 intergenic not near genes chr2L_5_13720001 chr2L_13720001 RAL-208 299 chr2L 13842133 13842160 chr2L 13842217 13842244 12 84 1.5 3.0 2.2 3.8 111 chr2L 13842133 intron CenG1A + chr2L 13842188 intron CenG1A + chr2L 13842244 intron CenG1A + chr2L_12_13840001 chr2L_13840001 RAL-208 300 chr2L 13853087 13853111 chr2L 13862237 13862261 roo 5 9150 2.0 3.5 2.8 1.3 9174 chr2L 13853087 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862261 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-208 301 chr2L 13905769 13905799 chr2L 13905861 13905891 12 92 3.5 5.0 4.2 2.3 122 chr2L 13905769 intron Ance + chr2L 13905830 intron Ance + chr2L 13905891 intron Ance + chr2L_12_13905001 chr2L_13905001 RAL-208 302 chr2L 13914045 13914065 chr2L 13914122 13914142 16 77 0.0 3.0 1.5 6.4 97 chr2L 13914045 intergenic not near genes chr2L 13914094 intergenic not near genes chr2L 13914142 intergenic not near genes chr2L_16_13910001 chr2L_13910001 RAL-208 303 chr2L 13949703 13949729 chr2L 13949854 13949880 12 151 2.5 6.5 4.5 2.2 177 chr2L 13949703 intron Ance-3 + chr2L 13949792 intron Ance-3 + chr2L 13949880 intron Ance-3 + chr2L_12_13945001 chr2L_13945001 RAL-208 304 chr2L 14056808 14056838 chr2L 14056892 14056924 12 86 3.0 2.5 2.8 3.2 116 chr2L 14056808 intron nAChRalpha5 + chr2L 14056866 intron nAChRalpha5 + chr2L 14056924 intron nAChRalpha5 + chr2L_12_14055001 chr2L_14055001 RAL-208 305 chr2L 14074058 14074084 chr2L 14074170 14074194 10 111 2.5 2.5 2.5 2.9 136 chr2L 14074058 intron nAChRalpha5 + chr2L 14074126 intron nAChRalpha5 + chr2L 14074194 intron nAChRalpha5 + chr2L_10_14070001 chr2L_14070001 RAL-208 306 chr2L 14107301 14107337 chr2L 14107380 14107416 9 79 2.0 2.5 2.2 2.8 115 chr2L 14107301 exon CG16879 + chr2L 14107358 exon CG16879 + chr2L 14107416 3` UTR CG16879 + chr2L_9_14105001 chr2L_14105001 RAL-208 307 chr2L 14246292 14246315 chr2L 14246365 14246392 14 78 0.0 0.0 0.0 14.0 100 chr2L 14246292 intergenic not near genes chr2L 14246342 intergenic not near genes chr2L 14246392 intergenic not near genes chr2L_14_14245001 chr2L_14245001 RAL-208 308 chr2L 14271048 14271072 chr2L 14271125 14271148 16 76 3.0 9.5 6.2 2.2 100 chr2L 14271048 intron wb + chr2L 14271098 intron wb + chr2L 14271148 intron wb + chr2L_16_14270001 chr2L_14270001 RAL-208 309 chr2L 14448170 14448202 chr2L 14448262 14448293 13 91 4.5 4.0 4.2 2.5 123 chr2L 14448170 intergenic CR45726 - chr2L 14448232 intergenic CR45726 - chr2L 14448293 intergenic CR45726 - chr2L_13_14445001 chr2L_14445001 RAL-208 310 chr2L 14532197 14532224 chr2L 14532277 14532304 4 80 6.5 12.0 9.2 0.4 107 chr2L 14532197 intergenic CR44852 - chr2L 14532250 intergenic CR44852 - chr2L 14532304 intergenic CR44852 - chr2L_4_14530001 chr2L_14530001 RAL-208 311 chr2L 14537658 14537686 chr2L 14537750 14537778 9 92 2.0 0.5 1.2 4.1 120 chr2L 14537658 intergenic not near genes chr2L 14537718 intergenic not near genes chr2L 14537778 intergenic not near genes chr2L_9_14535001 chr2L_14535001 RAL-208 312 chr2L 14588384 14588418 chr2L 14588538 14588572 7 154 2.0 1.0 1.5 2.8 188 chr2L 14588384 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588572 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-208 313 chr2L 14601976 14602003 chr2L 14602059 14602087 5 84 3.0 3.5 3.2 1.2 111 chr2L 14601976 exon osp - chr2L 14602032 intron osp - chr2L 14602087 intron osp - chr2L_5_14600001 chr2L_14600001 RAL-208 314 chr2L 14642569 14642599 chr2L 14651732 14651762 roo 13 9163 4.5 2.0 3.2 3.1 9193 chr2L 14642569 intron osp - chr2L 14647166 intron osp - chr2L 14651762 intron osp - chr2L_13_14645001 chr2L_14645001 RAL-208 315 chr2L 14694263 14694290 chr2L 14694387 14694410 8 123 1.0 2.0 1.5 3.2 147 chr2L 14694263 intergenic not near genes chr2L 14694336 intergenic not near genes chr2L 14694410 intergenic not near genes chr2L_8_14690001 chr2L_14690001 RAL-208 316 chr2L 14707218 14707237 chr2L 14707337 14707356 11 119 1.0 1.0 1.0 5.5 138 chr2L 14707218 intergenic not near genes chr2L 14707287 intergenic not near genes chr2L 14707356 intergenic not near genes chr2L_11_14705001 chr2L_14705001 RAL-208 317 chr2L 14716607 14716633 chr2L 14716684 14716711 14 78 2.0 4.5 3.2 3.3 104 chr2L 14716607 intergenic not near genes chr2L 14716659 intergenic not near genes chr2L 14716711 intergenic not near genes chr2L_14_14715001 chr2L_14715001 RAL-208 318 chr2L 14768930 14768951 chr2L 14769008 14769029 9 78 0.0 3.0 1.5 3.6 99 chr2L 14768930 intergenic not near genes chr2L 14768980 intergenic not near genes chr2L 14769029 intergenic not near genes chr2L_9_14765001 chr2L_14765001 RAL-208 319 chr2L 14794294 14794316 chr2L 14794508 14794530 4 214 2.5 4.5 3.5 0.9 236 chr2L 14794294 intergenic CG18420 - chr2L 14794412 intergenic CG18420 - chr2L 14794530 3` UTR CG18420 - chr2L_4_14790001 chr2L_14790001 RAL-208 320 chr2L 14803896 14803912 chr2L 14809099 14809115 copia 7 5203 1.5 5.5 3.5 1.6 5219 chr2L 14803896 intergenic not near genes chr2L 14806506 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-208 321 chr2L 14833791 14833822 chr2L 14833895 14833925 6 103 2.0 2.5 2.2 1.9 134 chr2L 14833791 intergenic not near genes chr2L 14833858 intergenic not near genes chr2L 14833925 intergenic not near genes chr2L_6_14830001 chr2L_14830001 RAL-208 322 chr2L 14840977 14841010 chr2L 14841064 14841097 13 87 0.5 2.0 1.2 5.9 120 chr2L 14840977 3` UTR CR43805 - chr2L 14841037 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_13_14840001 chr2L_14840001 RAL-208 323 chr2L 14858558 14858576 chr2L 14858639 14858655 9 80 3.5 1.0 2.2 2.8 97 chr2L 14858558 intergenic not near genes chr2L 14858606 intergenic not near genes chr2L 14858655 intergenic not near genes chr2L_9_14855001 chr2L_14855001 RAL-208 324 chr2L 14884694 14884699 chr2L 14884771 14884776 4 77 2.0 3.5 2.8 1.1 82 chr2L 14884694 intergenic CR45302 + chr2L 14884735 intergenic CR45302 + chr2L 14884776 intergenic CR45302 + chr2L_4_14880001 chr2L_14880001 RAL-208 325 chr2L 14889953 14889987 chr2L 14890377 14890412 jockey 6 424 2.0 5.0 3.5 1.3 459 chr2L 14889953 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890412 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-208 326 chr2L 14984380 14984405 chr2L 14991982 14992007 opus 8 7602 7.0 4.0 5.5 1.2 7627 chr2L 14984380 intron mol - chr2L 14988194 intron mol - chr2L 14992007 intron mol - chr2L_8_14985001 chr2L_14985001 RAL-208 327 chr2L 15013170 15013180 chr2L 15013279 15013289 6 109 0.0 4.5 2.2 1.9 119 chr2L 15013170 intergenic not near genes chr2L 15013230 intergenic not near genes chr2L 15013289 intergenic not near genes chr2L_6_15010001 chr2L_15010001 RAL-208 328 chr2L 15125598 15125624 chr2L 15125678 15125704 8 80 2.5 3.5 3.0 2.0 106 chr2L 15125598 intergenic not near genes chr2L 15125651 intergenic not near genes chr2L 15125704 intergenic not near genes chr2L_8_15125001 chr2L_15125001 RAL-208 329 chr2L 15142038 15142056 chr2L 15142117 15142135 5 79 3.0 6.0 4.5 0.9 97 chr2L 15142038 intergenic not near genes chr2L 15142086 intergenic not near genes chr2L 15142135 intergenic not near genes chr2L_5_15140001 chr2L_15140001 RAL-208 330 chr2L 15155824 15155847 chr2L 15155926 15155948 7 102 5.0 3.5 4.2 1.3 124 chr2L 15155824 intergenic not near genes chr2L 15155886 intergenic not near genes chr2L 15155948 intergenic not near genes chr2L_7_15155001 chr2L_15155001 RAL-208 331 chr2L 15226371 15226396 chr2L 15226446 15226471 13 76 1.0 5.5 3.2 3.1 100 chr2L 15226371 intergenic not near genes chr2L 15226421 intergenic not near genes chr2L 15226471 intergenic not near genes chr2L_13_15225001 chr2L_15225001 RAL-208 332 chr2L 15242629 15242654 chr2L 15242718 15242751 5 92 0.0 3.0 1.5 2.0 122 chr2L 15242629 intron ZnT35C - chr2L 15242690 intron ZnT35C - chr2L 15242751 intron ZnT35C - chr2L_5_15240001 chr2L_15240001 RAL-208 333 chr2L 15252985 15253000 chr2L 15253064 15253078 5 79 3.5 2.5 3.0 1.2 93 chr2L 15252985 intron dao + chr2L 15253032 intron dao + chr2L 15253078 intron dao + chr2L_5_15250001 chr2L_15250001 RAL-208 334 chr2L 15375823 15375842 chr2L 15375935 15375954 6 112 2.0 3.5 2.8 1.6 131 chr2L 15375823 intergenic not near genes chr2L 15375888 intergenic not near genes chr2L 15375954 intergenic not near genes chr2L_6_15375001 chr2L_15375001 RAL-208 335 chr2L 15446051 15446081 chr2L 15453520 15453548 blood 14 7469 3.0 4.0 3.5 3.1 7497 chr2L 15446051 intergenic not near genes chr2L 15449800 intergenic not near genes chr2L 15453548 intergenic not near genes chr2L_14_15445001 chr2L_15445001 RAL-208 336 chr2L 15478980 15478992 chr2L 15479152 15479164 9 172 2.0 2.0 2.0 3.0 184 chr2L 15478980 intergenic not near genes chr2L 15479072 intergenic not near genes chr2L 15479164 intergenic not near genes chr2L_9_15475001 chr2L_15475001 RAL-208 337 chr2L 15514322 15514331 chr2L 15514406 15514415 4 83 9.5 6.5 8.0 0.4 93 chr2L 15514322 intergenic not near genes chr2L 15514368 intergenic not near genes chr2L 15514415 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-208 338 chr2L 15586414 15586439 chr2L 15593466 15593491 297 11 7052 1.5 3.5 2.5 3.1 7077 chr2L 15586414 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_11_15585001 chr2L_15585001 RAL-208 339 chr2L 15823353 15823370 chr2L 15823429 15823446 5 76 3.0 1.5 2.2 1.6 93 chr2L 15823353 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823446 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-208 340 chr2L 15916692 15916724 chr2L 15916774 15916807 7 83 1.5 2.5 2.0 2.3 115 chr2L 15916692 intron beat-Ib - chr2L 15916750 intron beat-Ib - chr2L 15916807 intron beat-Ib - chr2L_7_15915001 chr2L_15915001 RAL-208 341 chr2L 15956016 15956036 chr2L 15957513 15957533 hobo 7 1497 3.5 4.5 4.0 1.4 1517 chr2L 15956016 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957533 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-208 342 chr2L 16001467 16001487 chr2L 16001555 16001575 6 88 1.0 6.5 3.8 1.2 108 chr2L 16001467 intron beat-Ic + chr2L 16001521 intron beat-Ic + chr2L 16001575 intron beat-Ic + chr2L_6_16000001 chr2L_16000001 RAL-208 343 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 17.0 14.5 15.8 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-208 344 chr2L 16121338 16121374 chr2L 16121449 16121485 11 111 2.5 4.5 3.5 2.4 147 chr2L 16121338 intergenic not near genes chr2L 16121412 intergenic not near genes chr2L 16121485 intergenic not near genes chr2L_11_16120001 chr2L_16120001 RAL-208 345 chr2L 16141173 16141194 chr2L 16146380 16146399 copia 8 5207 0.0 1.0 0.5 5.3 5226 chr2L 16141173 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146399 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-208 346 chr2L 16153746 16153758 chr2L 16160814 16160826 297 5 7068 5.5 3.0 4.2 1.0 7080 chr2L 16153746 intergenic not near genes chr2L 16157286 intergenic not near genes chr2L 16160826 intergenic not near genes chr2L_5_16155001 chr2L_16155001 RAL-208 347 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 19.0 14.5 16.8 0.4 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-208 348 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 17.0 14.5 15.8 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-208 349 chr2L 16243696 16243704 chr2L 16243779 16243787 4 82 0.0 2.0 1.0 2.0 91 chr2L 16243696 exon CG42818 + chr2L 16243742 exon CG42818 + chr2L 16243787 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-208 350 chr2L 16280259 16280283 chr2L 16281430 16281454 1360 10 1171 1.5 2.5 2.0 3.3 1195 chr2L 16280259 intron crp - chr2L 16280856 intron crp - chr2L 16281454 intron crp - chr2L_10_16280001 chr2L_16280001 RAL-208 351 chr2L 16309669 16309701 chr2L 16309752 16309784 13 83 1.5 1.5 1.5 5.2 115 chr2L 16309669 3` UTR cni - chr2L 16309726 3` UTR cni - chr2L 16309784 3` UTR cni - chr2L_13_16305001 chr2L_16305001 RAL-208 352 chr2L 16361860 16361881 chr2L 16361945 16361966 5 84 0.0 2.5 1.2 2.3 106 chr2L 16361860 intergenic not near genes chr2L 16361913 intergenic not near genes chr2L 16361966 intergenic not near genes chr2L_5_16360001 chr2L_16360001 RAL-208 353 chr2L 16375396 16375418 chr2L 16375487 16375508 4 90 0.0 0.0 0.0 4.0 112 chr2L 16375396 intergenic not near genes chr2L 16375452 intergenic not near genes chr2L 16375508 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-208 354 chr2L 16490316 16490328 chr2L 16490467 16490478 5 150 1.0 3.5 2.2 1.6 162 chr2L 16490316 3` UTR CR44994 - chr2L 16490397 3` UTR CR44994 - chr2L 16490478 3` UTR CR44994 - chr2L_5_16490001 chr2L_16490001 RAL-208 355 chr2L 16511962 16511994 chr2L 16519076 16519108 HMS-Beagle 7 7114 5.5 4.0 4.8 1.2 7146 chr2L 16511962 intron CG5953 - chr2L 16515535 intron CG5953 - chr2L 16519108 intron CG5953 - chr2L_7_16515001 chr2L_16515001 RAL-208 356 chr2L 16544653 16544678 chr2L 16544730 16544754 4 77 0.5 7.5 4.0 0.8 101 chr2L 16544653 intergenic CG42389 + chr2L 16544704 intergenic CG42389 + chr2L 16544754 intergenic CG42389 + chr2L_4_16540001 chr2L_16540001 RAL-208 357 chr2L 16565751 16565790 chr2L 16565828 16565867 11 77 6.0 5.5 5.8 1.6 116 chr2L 16565751 intron CG42389 + chr2L 16565809 intron CG42389 + chr2L 16565867 intron CG42389 + chr2L_11_16565001 chr2L_16565001 RAL-208 358 chr2L 16764973 16765002 chr2L 16765051 16765082 7 80 1.0 3.5 2.2 2.2 109 chr2L 16764973 intergenic not near genes chr2L 16765028 intergenic not near genes chr2L 16765082 intergenic not near genes chr2L_7_16765001 chr2L_16765001 RAL-208 359 chr2L 16841013 16841036 chr2L 16841089 16841112 14 76 4.0 3.0 3.5 3.1 99 chr2L 16841013 intron,intron SclA +,SclB + chr2L 16841062 intron,intron SclA +,SclB + chr2L 16841112 intron,intron SclA +,SclB + chr2L_14_16840001 chr2L_16840001 RAL-208 360 chr2L 16852787 16852803 chr2L 16859929 16859945 Doc4-element 7 7142 0.0 7.0 3.5 1.6 7158 chr2L 16852787 intergenic CG31810 - chr2L 16856366 intron CG31809 - chr2L 16859945 intergenic CG6012 - chr2L_7_16855001 chr2L_16855001 RAL-208 361 chr2L 16927275 16927291 chr2L 16927356 16927372 7 81 1.0 1.5 1.2 3.2 97 chr2L 16927275 intergenic not near genes chr2L 16927324 intergenic not near genes chr2L 16927372 intergenic not near genes chr2L_7_16925001 chr2L_16925001 RAL-208 362 chr2L 16958122 16958134 chr2L 16962910 16962922 Doc 4 4788 1.5 4.5 3.0 1.0 4800 chr2L 16958122 intergenic not near genes chr2L 16960522 intergenic not near genes chr2L 16962922 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-208 363 chr2L 17032504 17032522 chr2L 17032588 17032607 4 85 1.5 2.0 1.8 1.4 103 chr2L 17032504 intergenic not near genes chr2L 17032556 intergenic not near genes chr2L 17032607 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-208 364 chr2L 17033916 17033949 chr2L 17034001 17034034 9 85 1.5 2.5 2.0 3.0 118 chr2L 17033916 intergenic not near genes chr2L 17033975 intergenic not near genes chr2L 17034034 intergenic not near genes chr2L_9_17030001 chr2L_17030001 RAL-208 365 chr2L 17050022 17050050 chr2L 17050108 17050132 12 86 1.5 2.5 2.0 4.0 110 chr2L 17050022 intergenic not near genes chr2L 17050077 intergenic not near genes chr2L 17050132 intergenic not near genes chr2L_12_17050001 chr2L_17050001 RAL-208 366 chr2L 17052413 17052439 chr2L 17052525 17052551 7 112 1.0 1.5 1.2 3.2 138 chr2L 17052413 intergenic not near genes chr2L 17052482 intergenic not near genes chr2L 17052551 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-208 367 chr2L 17053285 17053309 chr2L 17053695 17053718 7 410 3.5 2.0 2.8 1.8 433 chr2L 17053285 intergenic not near genes chr2L 17053502 intergenic not near genes chr2L 17053718 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-208 368 chr2L 17062759 17062762 chr2L 17062841 17062844 6 82 3.0 4.5 3.8 1.2 85 chr2L 17062759 intergenic not near genes chr2L 17062802 intergenic not near genes chr2L 17062844 intergenic not near genes chr2L_6_17060001 chr2L_17060001 RAL-208 369 chr2L 17164552 17164575 chr2L 17165715 17165738 6 1163 3.5 3.0 3.2 1.4 1186 chr2L 17164552 intron,intron CG34106 +,beat-IIIa + chr2L 17165145 intron,intron CG34106 +,beat-IIIa + chr2L 17165738 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-208 370 chr2L 17167567 17167592 chr2L 17167808 17167833 pogo 10 241 3.0 2.0 2.5 2.9 266 chr2L 17167567 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167833 intron,intron CG34106 +,beat-IIIa + chr2L_10_17165001 chr2L_17165001 RAL-208 371 chr2L 17170463 17170472 chr2L 17170554 17170563 4 91 0.0 1.5 0.8 2.2 100 chr2L 17170463 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170513 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L 17170563 5` UTR,3` UTR CG34106 +,beat-IIIa + chr2L_4_17170001 chr2L_17170001 RAL-208 372 chr2L 17199165 17199180 chr2L 17200632 17200647 hobo 4 1466 5.5 3.0 4.2 0.8 1482 chr2L 17199165 intron beat-IIIc - chr2L 17199906 intron beat-IIIc - chr2L 17200647 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-208 373 chr2L 17238836 17238863 chr2L 17238921 17238948 7 85 3.0 2.5 2.8 1.8 112 chr2L 17238836 intron beat-IIIc - chr2L 17238892 intron beat-IIIc - chr2L 17238948 intron beat-IIIc - chr2L_7_17235001 chr2L_17235001 RAL-208 374 chr2L 17273189 17273214 chr2L 17277972 17277995 F-element 7 4782 4.0 3.0 3.5 1.6 4806 chr2L 17273189 intergenic not near genes chr2L 17275592 intergenic not near genes chr2L 17277995 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-208 375 chr2L 17327911 17327927 chr2L 17327997 17328013 5 86 2.0 3.0 2.5 1.4 102 chr2L 17327911 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328013 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-208 376 chr2L 17360022 17360049 chr2L 17360200 17360226 9 178 1.0 0.0 0.5 6.0 204 chr2L 17360022 intergenic not near genes chr2L 17360124 intergenic not near genes chr2L 17360226 intergenic not near genes chr2L_9_17360001 chr2L_17360001 RAL-208 377 chr2L 17379668 17379669 chr2L 17379762 17379763 4 94 8.5 0.0 4.2 0.8 95 chr2L 17379668 intron Lrch - chr2L 17379716 intron Lrch - chr2L 17379763 intron Lrch - chr2L_4_17375001 chr2L_17375001 RAL-208 378 chr2L 17419300 17419315 chr2L 17419376 17419391 5 76 0.5 3.5 2.0 1.7 91 chr2L 17419300 intron Dif - chr2L 17419346 intron Dif - chr2L 17419391 intron Dif - chr2L_5_17415001 chr2L_17415001 RAL-208 379 chr2L 17425768 17425792 chr2L 17425895 17425919 8 127 1.5 2.0 1.8 2.9 151 chr2L 17425768 intron Dif - chr2L 17425844 intron Dif - chr2L 17425919 intron Dif - chr2L_8_17425001 chr2L_17425001 RAL-208 380 chr2L 17432021 17432048 chr2L 17432125 17432155 1360 7 106 0.0 0.0 0.0 7.0 134 chr2L 17432021 intron Dif - chr2L 17432088 intron Dif - chr2L 17432155 intron Dif - chr2L_7_17430001 chr2L_17430001 RAL-208 381 chr2L 17491082 17491091 chr2L 17491163 17491173 7 82 0.0 7.5 3.8 1.5 91 chr2L 17491082 intron qua - chr2L 17491128 intron qua - chr2L 17491173 intron qua - chr2L_7_17490001 chr2L_17490001 RAL-208 382 chr2L 17631493 17631505 chr2L 17631582 17631594 4 89 3.0 0.0 1.5 1.6 101 chr2L 17631493 intergenic not near genes chr2L 17631544 intergenic not near genes chr2L 17631594 intergenic not near genes chr2L_4_17630001 chr2L_17630001 RAL-208 383 chr2L 17819923 17819952 chr2L 17825126 17825152 copia 10 5203 4.0 2.0 3.0 2.5 5229 chr2L 17819923 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825152 intron CadN2 - chr2L_10_17820001 chr2L_17820001 RAL-208 384 chr2L 17911968 17911988 chr2L 17914144 17914166 pogo 8 2177 4.0 6.5 5.2 1.3 2198 chr2L 17911968 intergenic not near genes chr2L 17913067 intergenic not near genes chr2L 17914166 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 RAL-208 385 chr2L 17951946 17951973 chr2L 17953413 17953440 hobo 12 1467 3.0 4.5 3.8 2.5 1494 chr2L 17951946 intergenic CR44398 -,CR44397 - chr2L 17952693 intergenic not near genes chr2L 17953440 intergenic not near genes chr2L_12_17950001 chr2L_17950001 RAL-208 386 chr2L 17987869 17987885 chr2L 17991968 17991984 9 4099 23.5 20.0 21.8 0.4 4115 chr2L 17987869 exon CG5681 + chr2L 17989926 intergenic Prosbeta5R2 + chr2L 17991984 intergenic Prosbeta5R2 + chr2L_9_17985001 chr2L_17985001 RAL-208 387 chr2L 18020741 18020771 chr2L 18020828 18020858 4 87 2.0 2.5 2.2 1.2 117 chr2L 18020741 intron rdo + chr2L 18020800 intron rdo + chr2L 18020858 intron rdo + chr2L_4_18020001 chr2L_18020001 RAL-208 388 chr2L 18032462 18032477 chr2L 18032748 18032763 9 285 1.0 3.0 2.0 3.0 301 chr2L 18032462 intron rdo + chr2L 18032612 intron rdo + chr2L 18032763 intron rdo + chr2L_9_18030001 chr2L_18030001 RAL-208 389 chr2L 18051874 18051902 chr2L 18061021 18061049 roo 12 9147 10.0 2.5 6.2 1.7 9175 chr2L 18051874 intron rdo + chr2L 18056462 intron rdo + chr2L 18061049 intron rdo + chr2L_12_18055001 chr2L_18055001 RAL-208 390 chr2L 18103039 18103061 chr2L 18103126 18103148 11 86 4.0 0.5 2.2 3.4 109 chr2L 18103039 intergenic not near genes chr2L 18103094 intergenic not near genes chr2L 18103148 intergenic not near genes chr2L_11_18100001 chr2L_18100001 RAL-208 391 chr2L 18254815 18254840 chr2L 18254915 18254940 12 100 7.0 2.0 4.5 2.2 125 chr2L 18254815 intron CG42750 - chr2L 18254878 intron CG42750 - chr2L 18254940 intron CG42750 - chr2L_12_18250001 chr2L_18250001 RAL-208 392 chr2L 18264065 18264092 chr2L 18264140 18264169 9 77 1.5 0.5 1.0 4.5 104 chr2L 18264065 intron CG42750 - chr2L 18264117 intron CG42750 - chr2L 18264169 intron CG42750 - chr2L_9_18260001 chr2L_18260001 RAL-208 393 chr2L 18274046 18274074 chr2L 18274132 18274160 11 86 4.0 7.5 5.8 1.6 114 chr2L 18274046 intron CG42750 - chr2L 18274103 intron CG42750 - chr2L 18274160 intron CG42750 - chr2L_11_18270001 chr2L_18270001 RAL-208 394 chr2L 18303986 18303997 chr2L 18304077 18304088 5 91 5.5 4.0 4.8 0.9 102 chr2L 18303986 intergenic not near genes chr2L 18304037 intergenic not near genes chr2L 18304088 intergenic not near genes chr2L_5_18300001 chr2L_18300001 RAL-208 395 chr2L 18364271 18364287 chr2L 18364371 18364387 4 100 2.0 5.5 3.8 0.8 116 chr2L 18364271 intron Fas3 + chr2L 18364329 intron Fas3 + chr2L 18364387 intron Fas3 + chr2L_4_18360001 chr2L_18360001 RAL-208 396 chr2L 18480426 18480459 chr2L 18480506 18480539 6 80 1.0 3.0 2.0 2.0 113 chr2L 18480426 intron CG10283 - chr2L 18480482 intron CG10283 - chr2L 18480539 intron CG10283 - chr2L_6_18480001 chr2L_18480001 RAL-208 397 chr2L 18531873 18531899 chr2L 18531951 18531978 11 78 4.0 0.0 2.0 3.7 105 chr2L 18531873 3` UTR CG10211 + chr2L 18531926 3` UTR CG10211 + chr2L 18531978 intergenic CG10211 + chr2L_11_18530001 chr2L_18530001 RAL-208 398 chr2L 18538567 18538589 chr2L 18538649 18538670 8 81 1.0 0.0 0.5 5.3 103 chr2L 18538567 intron Pde11 - chr2L 18538618 intron Pde11 - chr2L 18538670 intron Pde11 - chr2L_8_18535001 chr2L_18535001 RAL-208 399 chr2L 18565584 18565610 chr2L 18566018 18566044 11 434 1.0 5.0 3.0 2.8 460 chr2L 18565584 intron Pde11 - chr2L 18565814 intron Pde11 - chr2L 18566044 intron Pde11 - chr2L_11_18565001 chr2L_18565001 RAL-208 400 chr2L 18571547 18571582 chr2L 18571748 18571783 12 200 14.0 18.5 16.2 0.7 236 chr2L 18571547 intron Pde11 - chr2L 18571665 intron Pde11 - chr2L 18571783 intron Pde11 - chr2L_12_18570001 chr2L_18570001 RAL-208 401 chr2L 18571226 18571262 chr2L 18579310 18579346 16 8084 34.0 39.0 36.5 0.4 8120 chr2L 18571226 intron Pde11 - chr2L 18575286 intron Pde11 - chr2L 18579346 intron Pde11 - chr2L_16_18575001 chr2L_18575001 RAL-208 402 chr2L 18580816 18580835 chr2L 18580897 18580916 12 80 3.5 2.5 3.0 3.0 100 chr2L 18580816 intron Pde11 - chr2L 18580866 intron Pde11 - chr2L 18580916 intron Pde11 - chr2L_12_18580001 chr2L_18580001 RAL-208 403 chr2L 18737085 18737091 chr2L 18737206 18737212 4 121 2.0 4.0 3.0 1.0 127 chr2L 18737085 intergenic not near genes chr2L 18737148 intergenic not near genes chr2L 18737212 intergenic not near genes chr2L_4_18735001 chr2L_18735001 RAL-208 404 chr2L 18812574 18812587 chr2L 18812837 18812850 9 263 0.5 5.5 3.0 2.2 276 chr2L 18812574 intergenic CG17325 +,CG42305 + chr2L 18812712 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812850 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_9_18810001 chr2L_18810001 RAL-208 405 chr2L 18845279 18845294 chr2L 18845365 18845380 6 86 1.5 2.0 1.8 2.1 101 chr2L 18845279 5` UTR CG17321 + chr2L 18845330 5` UTR CG17321 + chr2L 18845380 5` UTR CG17321 + chr2L_6_18845001 chr2L_18845001 RAL-208 406 chr2L 18881004 18881021 chr2L 18881088 18881109 4 86 4.5 3.0 3.8 0.8 105 chr2L 18881004 5` UTR tup - chr2L 18881056 5` UTR tup - chr2L 18881109 5` UTR tup - chr2L_4_18880001 chr2L_18880001 RAL-208 407 chr2L 18902630 18902657 chr2L 18902911 18902938 8 280 3.0 1.0 2.0 2.7 308 chr2L 18902630 intergenic not near genes chr2L 18902784 intergenic not near genes chr2L 18902938 intergenic not near genes chr2L_8_18900001 chr2L_18900001 RAL-208 408 chr2L 18926578 18926587 chr2L 18926685 18926693 4 107 3.5 2.0 2.8 1.1 115 chr2L 18926578 intron ssp3 - chr2L 18926636 intron ssp3 - chr2L 18926693 intron ssp3 - chr2L_4_18925001 chr2L_18925001 RAL-208 409 chr2L 18955689 18955724 chr2L 18955776 18955811 12 86 1.0 4.5 2.8 3.2 122 chr2L 18955689 3` UTR CG10623 - chr2L 18955750 3` UTR CG10623 - chr2L 18955811 3` UTR CG10623 - chr2L_12_18955001 chr2L_18955001 RAL-208 410 chr2L 18981394 18981413 chr2L 18981477 18981496 4 82 3.0 1.0 2.0 1.3 102 chr2L 18981394 intron Swip-1 - chr2L 18981445 intron Swip-1 - chr2L 18981496 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-208 411 chr2L 19048841 19048862 chr2L 19048925 19048946 11 84 0.5 2.5 1.5 4.4 105 chr2L 19048841 intergenic Acn +,CG10470 + chr2L 19048894 intergenic Acn +,CG10470 + chr2L 19048946 intergenic Acn +,CG10470 + chr2L_11_19045001 chr2L_19045001 RAL-208 412 chr2L 19070269 19070295 chr2L 19070362 19070388 8 92 6.0 2.0 4.0 1.6 119 chr2L 19070269 intergenic CG10702 - chr2L 19070328 intergenic CG10702 - chr2L 19070388 intergenic not near genes chr2L_8_19070001 chr2L_19070001 RAL-208 413 chr2L 19077901 19077929 chr2L 19077983 19078011 14 82 2.5 4.5 3.5 3.1 110 chr2L 19077901 exon CG10700 - chr2L 19077956 exon CG10700 - chr2L 19078011 exon CG10700 - chr2L_14_19075001 chr2L_19075001 RAL-208 414 chr2L 19095817 19095850 chr2L 19095968 19096000 20 150 3.5 2.5 3.0 5.0 183 chr2L 19095817 intron Lim3 - chr2L 19095908 intron Lim3 - chr2L 19096000 intron Lim3 - chr2L_20_19095001 chr2L_19095001 RAL-208 415 chr2L 19101834 19101871 chr2L 19101920 19101957 7 86 3.5 3.0 3.2 1.7 123 chr2L 19101834 intron Lim3 - chr2L 19101896 intron Lim3 - chr2L 19101957 intron Lim3 - chr2L_7_19100001 chr2L_19100001 RAL-208 416 chr2L 19144953 19145197 chr2L 19145031 19145284 10 84 8.0 3.5 5.8 1.5 331 chr2L 19144953 intron brat + chr2L 19145118 intron brat + chr2L 19145284 intron brat + chr2L_10_19145001 chr2L_19145001 RAL-208 417 chr2L 19147369 19147400 chr2L 19154404 19154432 297 13 7034 1.5 2.0 1.8 4.6 7063 chr2L 19147369 intron brat + chr2L 19150900 intron brat + chr2L 19154432 intron brat + chr2L_13_19150001 chr2L_19150001 RAL-208 418 chr2L 19156903 19156909 chr2L 19156989 19156998 8 88 6.0 3.0 4.5 1.5 95 chr2L 19156903 intron brat + chr2L 19156950 intron brat + chr2L 19156998 intron brat + chr2L_8_19155001 chr2L_19155001 RAL-208 419 chr2L 19209614 19209632 chr2L 19209699 19209717 7 85 5.5 2.0 3.8 1.5 103 chr2L 19209614 intergenic not near genes chr2L 19209666 intergenic not near genes chr2L 19209717 intergenic not near genes chr2L_7_19205001 chr2L_19205001 RAL-208 420 chr2L 19331667 19331686 chr2L 19331746 19331765 7 79 4.0 2.5 3.2 1.7 98 chr2L 19331667 intergenic not near genes chr2L 19331716 intergenic not near genes chr2L 19331765 intergenic not near genes chr2L_7_19330001 chr2L_19330001 RAL-208 421 chr2L 19345013 19345036 chr2L 19357222 19357245 blood 10 12208 7.5 7.5 7.5 1.2 12232 chr2L 19345013 intron dnt - chr2L 19351129 intron dnt - chr2L 19357245 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-208 422 chr2L 19357557 19357568 chr2L 19357647 19357658 9 90 3.5 13.5 8.5 0.9 101 chr2L 19357557 intron dnt - chr2L 19357608 intron dnt - chr2L 19357658 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-208 423 chr2L 19373437 19373452 chr2L 19373773 19373788 8 336 1.5 2.5 2.0 2.7 351 chr2L 19373437 intergenic not near genes chr2L 19373612 intergenic not near genes chr2L 19373788 intergenic not near genes chr2L_8_19370001 chr2L_19370001 RAL-208 424 chr2L 19376354 19376374 chr2L 19376738 19376758 7 383 0.0 1.0 0.5 4.7 404 chr2L 19376354 intergenic not near genes chr2L 19376556 intergenic not near genes chr2L 19376758 intergenic not near genes chr2L_7_19375001 chr2L_19375001 RAL-208 425 chr2L 19405622 19405641 chr2L 19405712 19405731 5 89 1.0 2.5 1.8 1.8 109 chr2L 19405622 intron Pax - chr2L 19405676 intron Pax - chr2L 19405731 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-208 426 chr2L 19407719 19407737 chr2L 19407915 19407934 11 197 2.0 3.0 2.5 3.1 215 chr2L 19407719 intron Pax - chr2L 19407826 intron Pax - chr2L 19407934 intron Pax - chr2L_11_19405001 chr2L_19405001 RAL-208 427 chr2L 19415565 19415585 chr2L 19415753 19415773 12 188 4.5 4.0 4.2 2.3 208 chr2L 19415565 intron Pax - chr2L 19415669 intron Pax - chr2L 19415773 intron Pax - chr2L_12_19415001 chr2L_19415001 RAL-208 428 chr2L 19437523 19437529 chr2L 19437615 19437621 5 92 1.0 5.0 3.0 1.2 98 chr2L 19437523 intron CG10237 - chr2L 19437572 intron CG10237 - chr2L 19437621 intron CG10237 - chr2L_5_19435001 chr2L_19435001 RAL-208 429 chr2L 19441070 19441088 chr2L 19441147 19441164 15 77 5.0 7.5 6.2 2.1 94 chr2L 19441070 intron CG10237 - chr2L 19441117 intron CG10237 - chr2L 19441164 5` UTR CG10237 - chr2L_15_19440001 chr2L_19440001 RAL-208 430 chr2L 19469173 19469193 chr2L 19469258 19469277 5 85 3.0 3.0 3.0 1.2 104 chr2L 19469173 5` UTR CR45722 + chr2L 19469225 5` UTR CR45722 + chr2L 19469277 5` UTR CR45722 + chr2L_5_19465001 chr2L_19465001 RAL-208 431 chr2L 19541630 19541663 chr2L 19541715 19541748 15 85 1.5 2.5 2.0 5.0 118 chr2L 19541630 intergenic CG13081 + chr2L 19541689 intergenic CG13081 + chr2L 19541748 intergenic CG13081 + chr2L_15_19540001 chr2L_19540001 RAL-208 432 chr2L 19544594 19544606 chr2L 19544671 19544683 5 77 4.0 2.5 3.2 1.2 89 chr2L 19544594 exon ref(2)P + chr2L 19544638 exon ref(2)P + chr2L 19544683 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-208 433 chr2L 19558526 19558544 chr2L 19558629 19558648 8 104 3.0 3.5 3.2 1.9 122 chr2L 19558526 intron Tep5 + chr2L 19558587 intron Tep5 + chr2L 19558648 intron Tep5 + chr2L_8_19555001 chr2L_19555001 RAL-208 434 chr2L 19560002 19560035 chr2L 19560255 19560286 11 252 0.0 1.5 0.8 6.1 284 chr2L 19560002 exon Tep5 + chr2L 19560144 exon Tep5 + chr2L 19560286 intron Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-208 435 chr2L 19560839 19560864 chr2L 19560919 19560944 9 80 2.5 0.0 1.2 4.1 105 chr2L 19560839 intron Tep5 + chr2L 19560892 exon Tep5 + chr2L 19560944 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-208 436 chr2L 19561347 19561364 chr2L 19561488 19561505 5 141 1.5 5.0 3.2 1.2 158 chr2L 19561347 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561505 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-208 437 chr2L 19587791 19587823 chr2L 19587888 19587920 13 97 5.0 4.5 4.8 2.2 129 chr2L 19587791 intron Lar + chr2L 19587856 intron Lar + chr2L 19587920 intron Lar + chr2L_13_19585001 chr2L_19585001 RAL-208 438 chr2L 19608606 19608612 chr2L 19608697 19608703 5 91 2.5 3.5 3.0 1.2 97 chr2L 19608606 intron Lar + chr2L 19608654 intron Lar + chr2L 19608703 intron Lar + chr2L_5_19605001 chr2L_19605001 RAL-208 439 chr2L 19652570 19652594 chr2L 19674006 19674030 opus 6 21436 4.0 1.5 2.8 1.6 21460 chr2L 19652570 intron Lar + chr2L 19663300 intron Lar + chr2L 19674030 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-208 440 chr2L 19703556 19703568 chr2L 19712691 19712704 roo 6 9136 4.0 13.5 8.8 0.6 9148 chr2L 19703556 intron Lar + chr2L 19708130 intron Lar + chr2L 19712704 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-208 441 chr2L 19762817 19762832 chr2L 19763059 19763073 pogo 7 242 3.0 1.0 2.0 2.3 256 chr2L 19762817 intron fbp - chr2L 19762945 intron fbp - chr2L 19763073 intron fbp - chr2L_7_19760001 chr2L_19760001 RAL-208 442 chr2L 19826581 19826602 chr2L 19826660 19826679 9 79 1.5 6.5 4.0 1.8 98 chr2L 19826581 intron sick + chr2L 19826630 intron sick + chr2L 19826679 intron sick + chr2L_9_19825001 chr2L_19825001 RAL-208 443 chr2L 19856394 19856422 chr2L 19856638 19856666 10 244 2.0 1.5 1.8 3.6 272 chr2L 19856394 intron sick + chr2L 19856530 intron sick + chr2L 19856666 intron sick + chr2L_10_19855001 chr2L_19855001 RAL-208 444 chr2L 19871558 19871570 chr2L 19871645 19871655 9 86 0.0 4.5 2.2 2.8 97 chr2L 19871558 intron sick + chr2L 19871606 intron sick + chr2L 19871655 intron sick + chr2L_9_19870001 chr2L_19870001 RAL-208 445 chr2L 19888294 19888325 chr2L 19888373 19888405 14 79 5.5 2.0 3.8 2.9 111 chr2L 19888294 intron sick + chr2L 19888350 intron sick + chr2L 19888405 intron sick + chr2L_14_19885001 chr2L_19885001 RAL-208 446 chr2L 19911299 19911319 chr2L 19911387 19911407 5 88 0.5 6.5 3.5 1.1 108 chr2L 19911299 intron,3` UTR sick +,CR43097 - chr2L 19911353 intron,3` UTR sick +,CR43097 - chr2L 19911407 intron,3` UTR sick +,CR43097 - chr2L_5_19910001 chr2L_19910001 RAL-208 447 chr2L 19994650 19994673 chr2L 19994728 19994753 12 79 2.5 3.0 2.8 3.2 103 chr2L 19994650 intron CG43861 - chr2L 19994702 intron CG43861 - chr2L 19994753 intron CG43861 - chr2L_12_19990001 chr2L_19990001 RAL-208 448 chr2L 20005873 20005885 chr2L 20010946 20010961 flea 12 5075 6.5 2.5 4.5 2.2 5088 chr2L 20005873 intron CG43861 - chr2L 20008417 intron CG43861 - chr2L 20010961 intron CG43861 - chr2L_12_20005001 chr2L_20005001 RAL-208 449 chr2L 20036532 20036545 chr2L 20036616 20036629 6 84 4.0 2.5 3.2 1.4 97 chr2L 20036532 intron sNPF + chr2L 20036580 intron sNPF + chr2L 20036629 intron sNPF + chr2L_6_20035001 chr2L_20035001 RAL-208 450 chr2L 20041432 20041454 chr2L 20041517 20041539 10 84 6.5 3.0 4.8 1.7 107 chr2L 20041432 intron sNPF + chr2L 20041486 intron sNPF + chr2L 20041539 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-208 451 chr2L 20042037 20042052 chr2L 20042134 20042149 10 97 9.0 1.5 5.2 1.6 112 chr2L 20042037 intron sNPF + chr2L 20042093 intron sNPF + chr2L 20042149 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-208 452 chr2L 20046561 20046589 chr2L 20046647 20046675 4 87 0.5 3.5 2.0 1.3 114 chr2L 20046561 intron sNPF + chr2L 20046618 intron sNPF + chr2L 20046675 intron sNPF + chr2L_4_20045001 chr2L_20045001 RAL-208 453 chr2L 20079520 20079547 chr2L 20079641 20079668 5 121 6.0 2.5 4.2 1.0 148 chr2L 20079520 intron,intron neb +,fok - chr2L 20079594 intron,intron neb +,fok - chr2L 20079668 intron,intron neb +,fok - chr2L_5_20075001 chr2L_20075001 RAL-208 454 chr2L 20085464 20085498 chr2L 20085556 20085590 13 92 1.0 2.5 1.8 4.6 126 chr2L 20085464 intron neb + chr2L 20085527 intron neb + chr2L 20085590 intron neb + chr2L_13_20085001 chr2L_20085001 RAL-208 455 chr2L 20127983 20128006 chr2L 20128067 20128090 10 84 1.5 2.0 1.8 3.6 107 chr2L 20127983 intergenic not near genes chr2L 20128036 intergenic not near genes chr2L 20128090 intergenic not near genes chr2L_10_20125001 chr2L_20125001 RAL-208 456 chr2L 20245830 20245857 chr2L 20249593 20249618 11 3761 40.5 28.0 34.2 0.3 3788 chr2L 20245830 intergenic not near genes chr2L 20247724 intergenic CR40341 + chr2L 20249618 3` UTR CR40172 - chr2L_11_20245001 chr2L_20245001 RAL-208 457 chr2L 20252527 20252557 chr2L 20252609 20252639 13 82 2.5 5.0 3.8 2.7 112 chr2L 20252527 intergenic not near genes chr2L 20252583 intergenic not near genes chr2L 20252639 intergenic not near genes chr2L_13_20250001 chr2L_20250001 RAL-208 458 chr2L 20272123 20272141 chr2L 20282834 20282851 copia 12 10711 6.0 6.0 6.0 1.7 10728 chr2L 20272123 intergenic not near genes chr2L 20277487 intergenic not near genes chr2L 20282851 intergenic not near genes chr2L_12_20275001 chr2L_20275001 RAL-208 459 chr2L 20285338 20285369 chr2L 20285457 20285488 5 119 3.5 3.5 3.5 1.1 150 chr2L 20285338 intergenic not near genes chr2L 20285413 intergenic not near genes chr2L 20285488 intergenic not near genes chr2L_5_20285001 chr2L_20285001 RAL-208 460 chr2L 20303162 20303191 chr2L 20310630 20310659 blood 12 7468 0.5 4.5 2.5 3.4 7497 chr2L 20303162 intergenic not near genes chr2L 20306910 intergenic not near genes chr2L 20310659 intergenic not near genes chr2L_12_20305001 chr2L_20305001 RAL-208 461 chr2L 20310881 20310917 chr2L 20310960 20310991 6 78 0.0 3.0 1.5 2.4 110 chr2L 20310881 intergenic spir + chr2L 20310936 intergenic spir + chr2L 20310991 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-208 462 chr2L 20326891 20326909 chr2L 20326969 20326986 8 77 3.5 2.0 2.8 2.1 95 chr2L 20326891 intron spir + chr2L 20326938 intron spir + chr2L 20326986 intron spir + chr2L_8_20325001 chr2L_20325001 RAL-208 463 chr2L 20498690 20498708 chr2L 20498789 20498806 7 98 5.5 4.0 4.8 1.2 116 chr2L 20498690 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498806 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-208 464 chr2L 20568665 20568685 chr2L 20569055 20569073 X-element 7 389 5.5 3.0 4.2 1.3 408 chr2L 20568665 intron CR45347 + chr2L 20568869 intron CR45347 + chr2L 20569073 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-208 465 chr2L 20576220 20576246 chr2L 20583688 20583714 blood 8 7467 6.5 2.0 4.2 1.5 7494 chr2L 20576220 intergenic CR45347 + chr2L 20579967 intergenic not near genes chr2L 20583714 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-208 466 chr2L 20597095 20597118 chr2L 20597171 20597195 7 77 3.0 5.0 4.0 1.4 100 chr2L 20597095 intron CR44909 - chr2L 20597145 intron CR44909 - chr2L 20597195 intron CR44909 - chr2L_7_20595001 chr2L_20595001 RAL-208 467 chr2L 20611242 20611260 chr2L 20611331 20611348 4 88 0.0 1.0 0.5 2.7 106 chr2L 20611242 intron CR44909 - chr2L 20611295 intron CR44909 - chr2L 20611348 intron CR44909 - chr2L_4_20610001 chr2L_20610001 RAL-208 468 chr2L 20626105 20626128 chr2L 20626211 20626234 15 105 1.0 1.5 1.2 6.8 129 chr2L 20626105 3` UTR CR44909 - chr2L 20626170 3` UTR CR44909 - chr2L 20626234 intergenic CR44909 - chr2L_15_20625001 chr2L_20625001 RAL-208 469 chr2L 20668690 20668720 chr2L 20668765 20668796 7 76 4.0 5.5 4.8 1.2 106 chr2L 20668690 intron CG31678 - chr2L 20668743 intron CG31678 - chr2L 20668796 intron CG31678 - chr2L_7_20665001 chr2L_20665001 RAL-208 470 chr2L 20722360 20722389 chr2L 20722555 20722585 13 195 2.5 3.0 2.8 3.4 225 chr2L 20722360 5` UTR CR45306 + chr2L 20722472 intergenic CR45306 + chr2L 20722585 intergenic CR45306 + chr2L_13_20720001 chr2L_20720001 RAL-208 471 chr2L 20759182 20759189 chr2L 20759278 20759285 7 96 4.5 2.5 3.5 1.6 103 chr2L 20759182 intron dia + chr2L 20759234 intron dia + chr2L 20759285 intron dia + chr2L_7_20755001 chr2L_20755001 RAL-208 472 chr2L 20762668 20762678 chr2L 20762778 20762788 9 110 4.0 6.5 5.2 1.5 120 chr2L 20762668 intron dia + chr2L 20762728 intron dia + chr2L 20762788 intron dia + chr2L_9_20760001 chr2L_20760001 RAL-208 473 chr2L 20767190 20767224 chr2L 20767265 20767300 20 76 6.5 3.0 4.8 3.4 110 chr2L 20767190 3` UTR dia + chr2L 20767245 3` UTR dia + chr2L 20767300 3` UTR dia + chr2L_20_20765001 chr2L_20765001 RAL-208 474 chr2L 20804703 20804731 chr2L 20804788 20804816 9 84 2.5 1.5 2.0 3.0 113 chr2L 20804703 intron CG9328 + chr2L 20804760 intron CG9328 + chr2L 20804816 intron CG9328 + chr2L_9_20800001 chr2L_20800001 RAL-208 475 chr2L 20821501 20821515 chr2L 20821649 20821662 7 148 6.5 3.0 4.8 1.2 161 chr2L 20821501 intergenic not near genes chr2L 20821582 intergenic not near genes chr2L 20821662 intergenic not near genes chr2L_7_20820001 chr2L_20820001 RAL-208 476 chr2L 20835819 20835840 chr2L 20836535 20836557 Quasimodo 5 716 3.5 2.5 3.0 1.2 738 chr2L 20835819 5` UTR Oseg5 - chr2L 20836188 intergenic Oseg5 -,Spn38F - chr2L 20836557 intergenic Spn38F - chr2L_5_20835001 chr2L_20835001 RAL-208 477 chr2L 20862584 20862596 chr2L 20862681 20862693 9 97 0.0 7.5 3.8 1.9 109 chr2L 20862584 intergenic not near genes chr2L 20862638 intergenic not near genes chr2L 20862693 intergenic not near genes chr2L_9_20860001 chr2L_20860001 RAL-208 478 chr2L 20891537 20891544 chr2L 20896638 20896645 jockey 5 5101 5.0 2.5 3.8 1.0 5108 chr2L 20891537 intron,intron CG43739 -,sky - chr2L 20894091 intron,intron CG43739 -,sky - chr2L 20896645 intron,intron CG43739 -,sky - chr2L_5_20890001 chr2L_20890001 RAL-208 479 chr2L 20967937 20967959 chr2L 20968030 20968052 16 92 1.5 4.0 2.8 4.2 115 chr2L 20967937 intron CG42238 - chr2L 20967994 intron CG42238 - chr2L 20968052 intron CG42238 - chr2L_16_20965001 chr2L_20965001 RAL-208 480 chr2L 20976641 20976680 chr2L 20981455 20981495 X-element 9 4814 6.0 4.0 5.0 1.5 4854 chr2L 20976641 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981495 intron CG42238 - chr2L_9_20975001 chr2L_20975001 RAL-208 481 chr2L 20982265 20982297 chr2L 20982358 20982390 5 93 1.5 4.0 2.8 1.3 125 chr2L 20982265 intron CG42238 - chr2L 20982328 intron CG42238 - chr2L 20982390 intron CG42238 - chr2L_5_20980001 chr2L_20980001 RAL-208 482 chr2L 21003555 21003578 chr2L 21003640 21003663 4 85 2.5 4.0 3.2 1.0 108 chr2L 21003555 intron CG42238 - chr2L 21003609 intron CG42238 - chr2L 21003663 intron CG42238 - chr2L_4_21000001 chr2L_21000001 RAL-208 483 chr2L 21020273 21020310 chr2L 21023950 21023987 NOF 13 3676 4.0 1.5 2.8 3.4 3714 chr2L 21020273 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_13_21020001 chr2L_21020001 RAL-208 484 chr2L 21041134 21041161 chr2L 21049394 21049422 Tirant 11 8261 3.0 3.0 3.0 2.8 8288 chr2L 21041134 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049422 intron CG42238 - chr2L_11_21045001 chr2L_21045001 RAL-208 485 chr2L 21074920 21074952 chr2L 21075011 21075043 13 91 2.5 2.5 2.5 3.7 123 chr2L 21074920 intergenic tadr + chr2L 21074982 intergenic tadr + chr2L 21075043 intergenic tadr + chr2L_13_21070001 chr2L_21070001 RAL-208 486 chr2L 21113683 21113715 chr2L 21113776 21113808 9 93 1.0 0.5 0.8 5.0 125 chr2L 21113683 intron Nhe2 + chr2L 21113746 intron Nhe2 + chr2L 21113808 intron Nhe2 + chr2L_9_21110001 chr2L_21110001 RAL-208 487 chr2L 21169844 21169866 chr2L 21169926 21169948 8 82 3.5 4.0 3.8 1.7 104 chr2L 21169844 intron Acon + chr2L 21169896 intron Acon + chr2L 21169948 intron Acon + chr2L_8_21165001 chr2L_21165001 RAL-208 488 chr2L 21347555 21347580 chr2L 21355027 21355052 blood 6 7472 2.5 2.0 2.2 1.9 7497 chr2L 21347555 intron Tsp39D + chr2L 21351304 intron Tsp39D + chr2L 21355052 intron Tsp39D + chr2L_6_21350001 chr2L_21350001 RAL-208 489 chr2L 21355607 21355637 chr2L 21355752 21355780 23 144 2.0 2.5 2.2 7.2 173 chr2L 21355607 intron Tsp39D + chr2L 21355694 intron Tsp39D + chr2L 21355780 intron Tsp39D + chr2L_23_21355001 chr2L_21355001 RAL-208 490 chr2L 21396598 21396618 chr2L 21396833 21396853 9 234 5.5 4.0 4.8 1.6 255 chr2L 21396598 intergenic not near genes chr2L 21396726 intergenic not near genes chr2L 21396853 intergenic not near genes chr2L_9_21395001 chr2L_21395001 RAL-208 491 chr2L 21597035 21597063 chr2L 21604778 21604807 roo 7 7744 3.0 6.0 4.5 1.3 7772 chr2L 21597035 intergenic not near genes chr2L 21600921 intergenic not near genes chr2L 21604807 intergenic not near genes chr2L_7_21600001 chr2L_21600001 RAL-208 492 chr2L 21653193 21653224 chr2L 21656497 21656528 invader4 13 3304 3.0 3.5 3.2 3.1 3335 chr2L 21653193 intergenic not near genes chr2L 21654860 intergenic not near genes chr2L 21656528 intergenic not near genes chr2L_13_21650001 chr2L_21650001 RAL-208 493 chr2L 21684301 21684333 chr2L 21684564 21684596 13 263 0.5 4.0 2.2 4.1 295 chr2L 21684301 intron CG31619 + chr2L 21684448 intron CG31619 + chr2L 21684596 5` UTR CG31619 + chr2L_13_21680001 chr2L_21680001 RAL-208 494 chr2L 21685791 21685815 chr2L 21685867 21685891 7 75 2.0 1.0 1.5 2.8 100 chr2L 21685791 intron CG31619 + chr2L 21685841 intron CG31619 + chr2L 21685891 intron CG31619 + chr2L_7_21685001 chr2L_21685001 RAL-208 495 chr2L 21691837 21691860 chr2L 21698307 21698329 Burdock 7 6470 2.5 1.0 1.8 2.5 6492 chr2L 21691837 intron CG31619 + chr2L 21695083 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_7_21695001 chr2L_21695001 RAL-208 496 chr2L 21725952 21725963 chr2L 21726035 21726046 5 83 2.0 3.0 2.5 1.4 94 chr2L 21725952 intron CG31619 + chr2L 21725999 intron CG31619 + chr2L 21726046 intron CG31619 + chr2L_5_21725001 chr2L_21725001 RAL-208 497 chr2L 21750124 21750134 chr2L 21750447 21750457 5 323 0.0 3.0 1.5 2.0 333 chr2L 21750124 intron step - chr2L 21750290 intron step - chr2L 21750457 intron step - chr2L_5_21750001 chr2L_21750001 RAL-208 498 chr2L 21754661 21754688 chr2L 21754742 21754769 6 81 4.0 2.5 3.2 1.4 108 chr2L 21754661 intron step - chr2L 21754715 intron step - chr2L 21754769 intron step - chr2L_6_21750001 chr2L_21750001 RAL-208 499 chr2L 21755494 21755518 chr2L 21755616 21755640 6 123 4.0 5.0 4.5 1.1 146 chr2L 21755494 intron step - chr2L 21755567 intron step - chr2L 21755640 intron step - chr2L_6_21755001 chr2L_21755001 RAL-208 500 chr2L 21836406 21836420 chr2L 21836496 21836510 5 89 1.5 8.0 4.8 0.9 104 chr2L 21836406 3` UTR tsh + chr2L 21836458 3` UTR tsh + chr2L 21836510 3` UTR tsh + chr2L_5_21835001 chr2L_21835001 RAL-208 501 chr2L 21896438 21896460 chr2L 21896522 21896544 12 84 3.5 2.5 3.0 3.0 106 chr2L 21896438 intergenic CG11629 - chr2L 21896491 intergenic CG11629 - chr2L 21896544 intergenic CG11629 - chr2L_12_21895001 chr2L_21895001 RAL-208 502 chr2L 21981685 21981714 chr2L 21990850 21990879 roo 8 9165 0.5 6.5 3.5 1.8 9194 chr2L 21981685 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_8_21985001 chr2L_21985001 RAL-208 503 chr2L 22005777 22005793 chr2L 22005867 22005883 7 89 5.5 1.0 3.2 1.7 106 chr2L 22005777 intergenic not near genes chr2L 22005830 intergenic not near genes chr2L 22005883 intergenic not near genes chr2L_7_22005001 chr2L_22005001 RAL-208 504 chr2L 22037381 22037393 chr2L 22037683 22037694 INE-1 8 302 7.5 5.0 6.2 1.1 313 chr2L 22037381 intergenic CG41434 + chr2L 22037538 intergenic CG41434 + chr2L 22037694 intergenic CG41434 + chr2L_8_22035001 chr2L_22035001 RAL-208 505 chr2L 22179545 22179575 chr2L 22179622 22179652 9 77 3.0 2.0 2.5 2.6 107 chr2L 22179545 intron CG3635 + chr2L 22179598 intron CG3635 + chr2L 22179652 intron CG3635 + chr2L_9_22175001 chr2L_22175001 RAL-208 506 chr2L 22192027 22192050 chr2L 22192115 22192139 5 89 4.5 4.0 4.2 1.0 112 chr2L 22192027 intron Ir40a - chr2L 22192083 intron Ir40a - chr2L 22192139 intron Ir40a - chr2L_5_22190001 chr2L_22190001 RAL-208 507 chr2L 22212152 22212158 chr2L 22212699 22212705 4 547 0.0 8.5 4.2 0.8 553 chr2L 22212152 intron Ir40a - chr2L 22212428 intron Ir40a - chr2L 22212705 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-208 508 chr2L 22215905 22215934 chr2L 22215991 22216020 8 86 1.0 1.5 1.2 3.6 115 chr2L 22215905 intergenic not near genes chr2L 22215962 intergenic not near genes chr2L 22216020 intergenic not near genes chr2L_8_22215001 chr2L_22215001 RAL-208 509 chr2L 22239431 22239456 chr2L 22239512 22239537 11 81 2.5 5.5 4.0 2.2 106 chr2L 22239431 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239537 3` UTR CR43765 - chr2L_11_22235001 chr2L_22235001 RAL-208 510 chr2L 22258620 22258645 chr2L 22260744 22260769 G6 11 2124 4.0 2.5 3.2 2.6 2149 chr2L 22258620 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260769 intergenic not near genes chr2L_11_22255001 chr2L_22255001 RAL-208 511 chr2L 22293778 22293786 chr2L 22293861 22293869 7 83 3.5 6.0 4.8 1.2 91 chr2L 22293778 intergenic not near genes chr2L 22293824 intergenic not near genes chr2L 22293869 intergenic not near genes chr2L_7_22290001 chr2L_22290001 RAL-208 512 chr2L 22490510 22490520 chr2L 22497645 22497655 springer 8 7135 0.0 0.0 0.0 8.0 7145 chr2L 22490510 intergenic not near genes chr2L 22494082 intergenic not near genes chr2L 22497655 intergenic not near genes chr2L_8_22490001 chr2L_22490001 RAL-208 513 chr2L 22548921 22548944 chr2L 22550146 22550169 1360 11 1224 0.0 12.5 6.2 1.5 1248 chr2L 22548921 intergenic CG17490 + chr2L 22549545 intergenic not near genes chr2L 22550169 intergenic CG17493 + chr2L_11_22545001 chr2L_22545001 RAL-208 514 chr2L 22558138 22558167 chr2L 22558214 22558241 6 76 1.5 4.0 2.8 1.6 103 chr2L 22558138 intergenic not near genes chr2L 22558190 intergenic not near genes chr2L 22558241 intergenic not near genes chr2L_6_22555001 chr2L_22555001 RAL-208 515 chr2L 22558386 22558413 chr2L 22558697 22558724 10 310 4.5 3.0 3.8 2.1 338 chr2L 22558386 intergenic not near genes chr2L 22558555 intergenic not near genes chr2L 22558724 intergenic not near genes chr2L_10_22555001 chr2L_22555001 RAL-208 516 chr2L 22581970 22581998 chr2L 22583758 22583787 S-element 14 1789 2.0 2.0 2.0 4.7 1817 chr2L 22581970 intron CG17494 + chr2L 22582878 intron CG17494 + chr2L 22583787 intron CG17494 + chr2L_14_22580001 chr2L_22580001 RAL-208 517 chr2L 22674073 22674099 chr2L 22674150 22674175 7 76 4.0 2.5 3.2 1.7 102 chr2L 22674073 intron CG40006 - chr2L 22674124 intron CG40006 - chr2L 22674175 intron CG40006 - chr2L_7_22670001 chr2L_22670001 RAL-208 518 chr2L 22776421 22776450 chr2L 22778210 22778239 S-element 16 1789 1.5 6.0 3.8 3.3 1818 chr2L 22776421 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778239 intergenic not near genes chr2L_16_22775001 chr2L_22775001 RAL-208 519 chr2L 22983945 22983967 chr2L 22984021 22984042 6 76 2.5 2.5 2.5 1.7 97 chr2L 22983945 intron cta + chr2L 22983994 intron cta + chr2L 22984042 intron cta + chr2L_6_22980001 chr2L_22980001 RAL-208 520 chr2L 23168858 23168860 chr2L 23168933 23168934 5 75 2.5 3.5 3.0 1.2 76 chr2L 23168858 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168896 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168934 intron CG12567 - chr2L_5_23165001 chr2L_23165001 RAL-208 521 chr2R 552756 552777 chr2R 553974 553995 1360 7 1218 3.5 4.0 3.8 1.5 1239 chr2R 552756 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 553995 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-208 522 chr2R 652518 652535 chr2R 652872 652889 5 354 1.5 0.5 1.0 2.5 371 chr2R 652518 intergenic not near genes chr2R 652704 intergenic not near genes chr2R 652889 intergenic not near genes chr2R_5_650001 chr2R_650001 RAL-208 523 chr2R 1082372 1082385 chr2R 1087147 1087161 Doc 8 4776 7.5 8.5 8.0 0.9 4789 chr2R 1082372 intron rl + chr2R 1084766 intron rl + chr2R 1087161 intron rl + chr2R_8_1080001 chr2R_1080001 RAL-208 524 chr2R 1365867 1365894 chr2R 1365978 1366006 18 111 2.5 2.0 2.2 5.6 139 chr2R 1365867 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366006 intron l(2)41Ab + chr2R_18_1365001 chr2R_1365001 RAL-208 525 chr2R 2015133 2015158 chr2R 2015210 2015232 7 76 1.5 1.5 1.5 2.8 99 chr2R 2015133 intron CG17684 - chr2R 2015182 intron CG17684 - chr2R 2015232 intron CG17684 - chr2R_7_2015001 chr2R_2015001 RAL-208 526 chr2R 2498982 2499002 chr2R 2508129 2508148 roo 9 9147 6.5 2.0 4.2 1.7 9166 chr2R 2498982 intron MFS17 - chr2R 2503565 intron MFS17 - chr2R 2508148 intron MFS17 - chr2R_9_2500001 chr2R_2500001 RAL-208 527 chr2R 2508309 2508330 chr2R 2508447 2508468 4 138 2.5 1.5 2.0 1.3 159 chr2R 2508309 intron MFS17 - chr2R 2508388 intron MFS17 - chr2R 2508468 intron MFS17 - chr2R_4_2505001 chr2R_2505001 RAL-208 528 chr2R 3089390 3089400 chr2R 3089489 3089499 5 98 1.5 4.5 3.0 1.2 109 chr2R 3089390 intron CG42596 + chr2R 3089444 intron CG42596 + chr2R 3089499 intron CG42596 + chr2R_5_3085001 chr2R_3085001 RAL-208 529 chr2R 3515285 3515307 chr2R 3515373 3515395 6 88 9.0 10.0 9.5 0.6 110 chr2R 3515285 intergenic not near genes chr2R 3515340 intergenic not near genes chr2R 3515395 intergenic not near genes chr2R_6_3515001 chr2R_3515001 RAL-208 530 chr2R 3532624 3532633 chr2R 3536067 3536076 Doc 4 3443 0.5 0.5 0.5 2.7 3452 chr2R 3532624 intergenic not near genes chr2R 3534350 intergenic not near genes chr2R 3536076 intergenic not near genes chr2R_4_3530001 chr2R_3530001 RAL-208 531 chr2R 3818931 3818941 chr2R 3819047 3819055 10 116 10.5 10.0 10.2 0.9 124 chr2R 3818931 intergenic not near genes chr2R 3818993 intergenic not near genes chr2R 3819055 intergenic not near genes chr2R_10_3815001 chr2R_3815001 RAL-208 532 chr2R 4312951 4312986 chr2R 4313035 4313070 29 84 2.0 3.5 2.8 7.6 119 chr2R 4312951 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313070 intergenic not near genes chr2R_29_4310001 chr2R_4310001 RAL-208 533 chr2R 4621316 4621346 chr2R 4621856 4621882 14 539 0.5 2.0 1.2 6.4 566 chr2R 4621316 3` UTR CR44101 - chr2R 4621599 3` UTR CR44101 - chr2R 4621882 3` UTR CR44101 - chr2R_14_4620001 chr2R_4620001 RAL-208 534 chr2R 4622961 4622986 chr2R 4624120 4624145 1360 9 1158 2.0 7.0 4.5 1.6 1184 chr2R 4622961 intergenic CR44101 - chr2R 4623553 intergenic not near genes chr2R 4624145 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-208 535 chr2R 4751718 4751726 chr2R 4751812 4751820 4 94 2.0 3.0 2.5 1.1 102 chr2R 4751718 intron conu + chr2R 4751769 intron conu + chr2R 4751820 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-208 536 chr2R 5075227 5075244 chr2R 5075355 5075371 4 128 5.0 0.0 2.5 1.1 144 chr2R 5075227 intergenic not near genes chr2R 5075299 intergenic not near genes chr2R 5075371 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-208 537 chr2R 5075352 5075370 chr2R 5075768 5075786 6 415 0.0 2.5 1.2 2.7 434 chr2R 5075352 intergenic not near genes chr2R 5075569 intergenic not near genes chr2R 5075786 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-208 538 chr2R 5080793 5080814 chr2R 5080884 5080905 8 90 2.5 0.0 1.2 3.6 112 chr2R 5080793 intergenic not near genes chr2R 5080849 intergenic not near genes chr2R 5080905 intergenic not near genes chr2R_8_5080001 chr2R_5080001 RAL-208 539 chr2R 5082130 5082160 chr2R 5086808 5086840 11 4679 24.5 40.0 32.2 0.3 4710 chr2R 5082130 intergenic not near genes chr2R 5084485 intergenic not near genes chr2R 5086840 intergenic not near genes chr2R_11_5080001 chr2R_5080001 RAL-208 540 chr2R 5303487 5303521 chr2R 5303575 5303609 24 88 2.5 6.0 4.2 4.6 122 chr2R 5303487 intergenic not near genes chr2R 5303548 intergenic not near genes chr2R 5303609 intergenic not near genes chr2R_24_5300001 chr2R_5300001 RAL-208 541 chr2R 5342827 5342860 chr2R 5342924 5342957 9 97 2.0 2.0 2.0 3.0 130 chr2R 5342827 intergenic not near genes chr2R 5342892 intergenic not near genes chr2R 5342957 intergenic not near genes chr2R_9_5340001 chr2R_5340001 RAL-208 542 chr2R 5417996 5418027 chr2R 5420628 5420659 Burdock 9 2632 5.0 4.0 4.5 1.6 2663 chr2R 5417996 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_9_5415001 chr2R_5415001 RAL-208 543 chr2R 5476359 5476385 chr2R 5476903 5476929 16 544 2.0 3.5 2.8 4.2 570 chr2R 5476359 intron CG30440 - chr2R 5476644 intron CG30440 - chr2R 5476929 intron CG30440 - chr2R_16_5475001 chr2R_5475001 RAL-208 544 chr2R 5477311 5477334 chr2R 5477439 5477463 8 128 5.5 2.5 4.0 1.6 152 chr2R 5477311 intron CG30440 - chr2R 5477387 intron CG30440 - chr2R 5477463 intron CG30440 - chr2R_8_5475001 chr2R_5475001 RAL-208 545 chr2R 5484870 5484886 chr2R 5484957 5484973 9 87 0.0 4.0 2.0 3.0 103 chr2R 5484870 intron CG30440 - chr2R 5484922 intron CG30440 - chr2R 5484973 intron CG30440 - chr2R_9_5480001 chr2R_5480001 RAL-208 546 chr2R 5509520 5509547 chr2R 5509616 5509643 10 96 1.0 5.5 3.2 2.4 123 chr2R 5509520 intron CG30438 + chr2R 5509582 intron CG30438 + chr2R 5509643 intron CG30438 + chr2R_10_5505001 chr2R_5505001 RAL-208 547 chr2R 5543207 5543221 chr2R 5547290 5547305 invader1 9 4084 0.0 4.0 2.0 3.0 4098 chr2R 5543207 intron CG30438 + chr2R 5545256 intron CG30438 + chr2R 5547305 intron CG30438 + chr2R_9_5545001 chr2R_5545001 RAL-208 548 chr2R 5611802 5611822 chr2R 5611906 5611926 6 104 0.5 2.0 1.2 2.7 124 chr2R 5611802 intergenic CG17508 + chr2R 5611864 intergenic CG17508 + chr2R 5611926 intergenic CG17508 + chr2R_6_5610001 chr2R_5610001 RAL-208 549 chr2R 5664294 5664314 chr2R 5664369 5664393 11 79 2.0 4.5 3.2 2.6 99 chr2R 5664294 5` UTR CR45472 + chr2R 5664344 intron CR45472 + chr2R 5664393 intron CR45472 + chr2R_11_5660001 chr2R_5660001 RAL-208 550 chr2R 5678323 5678342 chr2R 5678701 5678720 8 378 1.0 3.0 2.0 2.7 397 chr2R 5678323 intron scaf - chr2R 5678522 intron scaf - chr2R 5678720 intron scaf - chr2R_8_5675001 chr2R_5675001 RAL-208 551 chr2R 5606784 5606817 chr2R 5736776 5736805 4 129989 10.5 13.5 12.0 0.3 130021 chr2R 5606784 intergenic not near genes chr2R 5671794 5` UTR kune + chr2R 5736805 intergenic not near genes chr2R_4_5670001 chr2R_5670001 RAL-208 552 chr2R 5772519 5772748 chr2R 5772598 5772861 20 101 1.0 2.5 1.8 7.1 342 chr2R 5772519 3` UTR Gp210 + chr2R 5772690 3` UTR Gp210 + chr2R 5772861 3` UTR Gp210 + chr2R_20_5770001 chr2R_5770001 RAL-208 553 chr2R 5838871 5838898 chr2R 5838957 5838983 12 85 4.0 6.5 5.2 1.9 112 chr2R 5838871 intron dpr12 + chr2R 5838927 intron dpr12 + chr2R 5838983 intron dpr12 + chr2R_12_5835001 chr2R_5835001 RAL-208 554 chr2R 5847666 5847692 chr2R 5847742 5847768 11 76 2.0 2.5 2.2 3.4 102 chr2R 5847666 intron dpr12 + chr2R 5847717 intron dpr12 + chr2R 5847768 intron dpr12 + chr2R_11_5845001 chr2R_5845001 RAL-208 555 chr2R 5861291 5861320 chr2R 5861412 5861441 17 121 0.0 7.0 3.5 3.8 150 chr2R 5861291 intergenic dpr12 + chr2R 5861366 intergenic not near genes chr2R 5861441 intergenic not near genes chr2R_17_5860001 chr2R_5860001 RAL-208 556 chr2R 5869276 5869300 chr2R 5874352 5874376 flea 15 5075 6.0 7.0 6.5 2.0 5100 chr2R 5869276 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874376 intergenic not near genes chr2R_15_5870001 chr2R_5870001 RAL-208 557 chr2R 5878343 5878351 chr2R 5878434 5878442 4 91 6.0 6.5 6.2 0.6 99 chr2R 5878343 intergenic not near genes chr2R 5878392 intergenic not near genes chr2R 5878442 intergenic not near genes chr2R_4_5875001 chr2R_5875001 RAL-208 558 chr2R 5878923 5878951 chr2R 5879003 5879031 6 80 3.0 0.5 1.8 2.1 108 chr2R 5878923 intergenic CG44438 - chr2R 5878977 intergenic CG44438 - chr2R 5879031 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-208 559 chr2R 5902162 5902187 chr2R 5909721 5909746 17.6 9 7559 4.0 3.0 3.5 2.0 7584 chr2R 5902162 intron CG43366 + chr2R 5905954 intron CG43366 + chr2R 5909746 intron CG43366 + chr2R_9_5905001 chr2R_5905001 RAL-208 560 chr2R 5914136 5914157 chr2R 5914427 5914448 10 291 2.5 3.5 3.0 2.5 312 chr2R 5914136 intron CG43366 + chr2R 5914292 intron CG43366 + chr2R 5914448 intron CG43366 + chr2R_10_5910001 chr2R_5910001 RAL-208 561 chr2R 5947072 5947082 chr2R 5947193 5947203 6 121 1.5 2.5 2.0 2.0 131 chr2R 5947072 intergenic not near genes chr2R 5947138 intergenic not near genes chr2R 5947203 intergenic not near genes chr2R_6_5945001 chr2R_5945001 RAL-208 562 chr2R 5985633 5985664 chr2R 5985789 5985819 8 156 4.5 1.5 3.0 2.0 186 chr2R 5985633 intron Src42A + chr2R 5985726 intron Src42A + chr2R 5985819 intron Src42A + chr2R_8_5985001 chr2R_5985001 RAL-208 563 chr2R 6033440 6033474 chr2R 6033525 6033556 6 84 2.5 3.0 2.8 1.6 116 chr2R 6033440 intron SCAP - chr2R 6033498 intron SCAP - chr2R 6033556 intron SCAP - chr2R_6_6030001 chr2R_6030001 RAL-208 564 chr2R 6053047 6053083 chr2R 6053134 6053170 19 87 3.5 0.5 2.0 6.3 123 chr2R 6053047 intron CCHa2-R + chr2R 6053108 intron CCHa2-R + chr2R 6053170 intron CCHa2-R + chr2R_19_6050001 chr2R_6050001 RAL-208 565 chr2R 6081421 6081454 chr2R 6081542 6081575 22 121 2.5 4.0 3.2 5.2 154 chr2R 6081421 intron Ars2 - chr2R 6081498 intron Ars2 - chr2R 6081575 intron Ars2 - chr2R_22_6080001 chr2R_6080001 RAL-208 566 chr2R 6096725 6096752 chr2R 6101919 6101949 BS 12 5197 0.0 0.5 0.2 10.0 5224 chr2R 6096725 intron EcR - chr2R 6099337 intron EcR - chr2R 6101949 intron EcR - chr2R_12_6095001 chr2R_6095001 RAL-208 567 chr2R 6129326 6129358 chr2R 6129404 6129433 11 78 1.0 4.5 2.8 2.9 107 chr2R 6129326 intron EcR - chr2R 6129380 intron EcR - chr2R 6129433 intron EcR - chr2R_11_6125001 chr2R_6125001 RAL-208 568 chr2R 6151526 6151535 chr2R 6151602 6151611 4 76 2.0 5.0 3.5 0.9 85 chr2R 6151526 intron EcR - chr2R 6151568 intron EcR - chr2R 6151611 intron EcR - chr2R_4_6150001 chr2R_6150001 RAL-208 569 chr2R 6178122 6178137 chr2R 6178247 6178263 11 126 4.0 1.0 2.5 3.1 141 chr2R 6178122 intergenic not near genes chr2R 6178192 intergenic not near genes chr2R 6178263 intergenic not near genes chr2R_11_6175001 chr2R_6175001 RAL-208 570 chr2R 6194689 6194703 chr2R 6194772 6194786 5 83 8.0 6.0 7.0 0.6 97 chr2R 6194689 intron Ptr - chr2R 6194738 intron Ptr - chr2R 6194786 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-208 571 chr2R 6494537 6494552 chr2R 6499299 6499314 F-element 5 4762 2.5 1.5 2.0 1.7 4777 chr2R 6494537 intergenic not near genes chr2R 6496926 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-208 572 chr2R 6502252 6502284 chr2R 6502566 6502597 10 314 3.0 3.0 3.0 2.5 345 chr2R 6502252 5` UTR jing + chr2R 6502424 5` UTR jing + chr2R 6502597 5` UTR jing + chr2R_10_6500001 chr2R_6500001 RAL-208 573 chr2R 6546716 6546744 chr2R 6546817 6546845 18 101 0.5 4.0 2.2 5.6 129 chr2R 6546716 intron jing + chr2R 6546780 intron jing + chr2R 6546845 intron jing + chr2R_18_6545001 chr2R_6545001 RAL-208 574 chr2R 6579777 6579802 chr2R 6584863 6584888 flea 8 5086 4.0 6.0 5.0 1.3 5111 chr2R 6579777 intron jing + chr2R 6582332 intron jing + chr2R 6584888 intron jing + chr2R_8_6580001 chr2R_6580001 RAL-208 575 chr2R 6595358 6595382 chr2R 6595439 6595465 7 82 1.5 3.5 2.5 2.0 107 chr2R 6595358 intron jing + chr2R 6595412 intron jing + chr2R 6595465 intron jing + chr2R_7_6595001 chr2R_6595001 RAL-208 576 chr2R 6624434 6624466 chr2R 6624517 6624550 12 84 2.5 2.5 2.5 3.4 116 chr2R 6624434 exon CG33919 - chr2R 6624492 intron CG33919 - chr2R 6624550 exon CG33919 - chr2R_12_6620001 chr2R_6620001 RAL-208 577 chr2R 6699590 6699622 chr2R 6699675 6699706 8 84 1.0 1.0 1.0 4.0 116 chr2R 6699590 intergenic Rab2 + chr2R 6699648 intergenic Rab2 + chr2R 6699706 intergenic Rab2 + chr2R_8_6695001 chr2R_6695001 RAL-208 578 chr2R 6741495 6741530 chr2R 6741573 6741608 8 78 5.5 3.0 4.2 1.5 113 chr2R 6741495 intergenic phtf + chr2R 6741552 intergenic phtf + chr2R 6741608 intergenic phtf + chr2R_8_6740001 chr2R_6740001 RAL-208 579 chr2R 6786936 6786965 chr2R 6787088 6787118 12 153 2.0 3.5 2.8 3.2 182 chr2R 6786936 intron Epac - chr2R 6787027 intron Epac - chr2R 6787118 intron Epac - chr2R_12_6785001 chr2R_6785001 RAL-208 580 chr2R 6825627 6825645 chr2R 6825874 6825892 8 248 29.5 17.5 23.5 0.3 265 chr2R 6825627 intergenic not near genes chr2R 6825760 intergenic not near genes chr2R 6825892 intergenic not near genes chr2R_8_6825001 chr2R_6825001 RAL-208 581 chr2R 6843874 6843883 chr2R 6843953 6843962 5 79 4.5 5.5 5.0 0.8 88 chr2R 6843874 intergenic not near genes chr2R 6843918 intergenic not near genes chr2R 6843962 intergenic not near genes chr2R_5_6840001 chr2R_6840001 RAL-208 582 chr2R 6897768 6897788 chr2R 6897897 6897919 11 131 4.0 3.0 3.5 2.4 151 chr2R 6897768 intron CG30158 + chr2R 6897844 intron CG30158 + chr2R 6897919 intron CG30158 + chr2R_11_6895001 chr2R_6895001 RAL-208 583 chr2R 7196568 7196595 chr2R 7201343 7201370 F-element 4 4775 5.0 7.5 6.2 0.6 4802 chr2R 7196568 intron pk + chr2R 7198969 intron pk + chr2R 7201370 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-208 584 chr2R 7235814 7235849 chr2R 7240906 7240941 jockey 13 5092 9.0 7.5 8.2 1.4 5127 chr2R 7235814 intergenic not near genes chr2R 7238378 intergenic not near genes chr2R 7240941 intergenic not near genes chr2R_13_7235001 chr2R_7235001 RAL-208 585 chr2R 7235241 7235275 chr2R 7247724 7247758 13 12483 45.5 65.0 55.2 0.2 12517 chr2R 7235241 intergenic Or43a - chr2R 7241500 intergenic not near genes chr2R 7247758 intergenic not near genes chr2R_13_7240001 chr2R_7240001 RAL-208 586 chr2R 7244868 7244899 chr2R 7251018 7251050 9 6150 64.5 36.5 50.5 0.2 6182 chr2R 7244868 intron Ady43A - chr2R 7247959 intergenic not near genes chr2R 7251050 intergenic Gadd45 + chr2R_9_7245001 chr2R_7245001 RAL-208 587 chr2R 7328128 7328149 chr2R 7328239 7328260 11 110 2.0 3.0 2.5 3.1 132 chr2R 7328128 intron,intron Dscam1 -,CR45129 + chr2R 7328194 intron,intron Dscam1 -,CR45129 + chr2R 7328260 intron,intron Dscam1 -,CR45129 + chr2R_11_7325001 chr2R_7325001 RAL-208 588 chr2R 7378975 7379004 chr2R 7379075 7379104 11 100 1.5 3.5 2.5 3.1 129 chr2R 7378975 intron Dscam1 - chr2R 7379040 intron Dscam1 - chr2R 7379104 intron Dscam1 - chr2R_11_7375001 chr2R_7375001 RAL-208 589 chr2R 7405734 7405746 chr2R 7410243 7410256 11 4510 33.5 29.0 31.2 0.3 4522 chr2R 7405734 intron Eaf - chr2R 7407995 intergenic Eaf -,CG1701 - chr2R 7410256 intergenic not near genes chr2R_11_7405001 chr2R_7405001 RAL-208 590 chr2R 7418140 7418162 chr2R 7418219 7418241 8 79 2.0 6.0 4.0 1.6 101 chr2R 7418140 intergenic not near genes chr2R 7418190 intergenic not near genes chr2R 7418241 intergenic not near genes chr2R_8_7415001 chr2R_7415001 RAL-208 591 chr2R 7434895 7434920 chr2R 7439196 7439221 Juan 9 4301 4.5 8.0 6.2 1.2 4326 chr2R 7434895 intergenic so + chr2R 7437058 intergenic not near genes chr2R 7439221 intergenic not near genes chr2R_9_7435001 chr2R_7435001 RAL-208 592 chr2R 7459282 7459304 chr2R 7459370 7459392 10 88 4.5 1.5 3.0 2.5 110 chr2R 7459282 intergenic CG11141 -,Inos - chr2R 7459337 intergenic CG11141 -,Inos - chr2R 7459392 intergenic CG11141 - chr2R_10_7455001 chr2R_7455001 RAL-208 593 chr2R 7608410 7608431 chr2R 7613613 7613634 I-element 7 5203 5.5 0.0 2.8 1.8 5224 chr2R 7608410 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613634 intron CG1358 - chr2R_7_7610001 chr2R_7610001 RAL-208 594 chr2R 7623810 7623838 chr2R 7623997 7624025 15 187 2.5 7.0 4.8 2.6 215 chr2R 7623810 intron CG43340 + chr2R 7623918 intron CG43340 + chr2R 7624025 intron CG43340 + chr2R_15_7620001 chr2R_7620001 RAL-208 595 chr2R 7714080 7714117 chr2R 7714156 7714193 16 76 2.0 0.0 1.0 8.0 113 chr2R 7714080 exon CG1942 + chr2R 7714136 3` UTR CG1942 + chr2R 7714193 intergenic CG1942 + chr2R_16_7710001 chr2R_7710001 RAL-208 596 chr2R 7815674 7815700 chr2R 7822143 7822167 Burdock 16 6468 2.0 3.5 2.8 4.2 6493 chr2R 7815674 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822167 3` UTR cathD - chr2R_16_7815001 chr2R_7815001 RAL-208 597 chr2R 7841730 7841742 chr2R 7841812 7841824 5 82 3.5 4.5 4.0 1.0 94 chr2R 7841730 intron Dgk - chr2R 7841777 intron Dgk - chr2R 7841824 intron Dgk - chr2R_5_7840001 chr2R_7840001 RAL-208 598 chr2R 7869193 7869207 chr2R 7873979 7873991 Doc 5 4786 2.5 2.0 2.2 1.6 4798 chr2R 7869193 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7873991 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-208 599 chr2R 7915711 7915746 chr2R 7915803 7915837 12 91 3.0 4.0 3.5 2.7 126 chr2R 7915711 intron CG12159 - chr2R 7915774 intron CG12159 - chr2R 7915837 intron CG12159 - chr2R_12_7915001 chr2R_7915001 RAL-208 600 chr2R 7924960 7924968 chr2R 7925075 7925083 7 115 14.0 14.5 14.2 0.5 123 chr2R 7924960 5` UTR Kdm4A - chr2R 7925022 intergenic Kdm4A - chr2R 7925083 intergenic Kdm4A - chr2R_7_7925001 chr2R_7925001 RAL-208 601 chr2R 8003084 8003091 chr2R 8003180 8003188 5 97 7.0 14.5 10.8 0.4 104 chr2R 8003084 intergenic not near genes chr2R 8003136 intergenic not near genes chr2R 8003188 intergenic not near genes chr2R_5_8000001 chr2R_8000001 RAL-208 602 chr2R 8014118 8014148 chr2R 8014194 8014224 14 76 6.0 3.5 4.8 2.4 106 chr2R 8014118 intergenic CG14762 - chr2R 8014171 intergenic CG14762 - chr2R 8014224 intergenic CG14762 - chr2R_14_8010001 chr2R_8010001 RAL-208 603 chr2R 8015650 8015683 chr2R 8017673 8017705 9 2022 2.5 6.0 4.2 1.7 2055 chr2R 8015650 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_9_8015001 chr2R_8015001 RAL-208 604 chr2R 8067082 8067097 chr2R 8067166 8067181 9 84 0.5 4.5 2.5 2.6 99 chr2R 8067082 intron CG17977 - chr2R 8067132 exon CG17977 - chr2R 8067181 exon CG17977 - chr2R_9_8065001 chr2R_8065001 RAL-208 605 chr2R 8076678 8076710 chr2R 8076758 8076790 12 80 4.5 1.0 2.8 3.2 112 chr2R 8076678 intron lig + chr2R 8076734 intron lig + chr2R 8076790 intron lig + chr2R_12_8075001 chr2R_8075001 RAL-208 606 chr2R 8089261 8089281 chr2R 8089347 8089367 6 85 1.5 6.5 4.0 1.2 106 chr2R 8089261 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089367 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-208 607 chr2R 8160937 8160950 chr2R 8161027 8161040 1360 5 90 0.0 3.5 1.8 1.8 103 chr2R 8160937 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161040 intron CG8708 - chr2R_5_8160001 chr2R_8160001 RAL-208 608 chr2R 8298592 8298595 chr2R 8298684 8298687 4 92 2.0 5.5 3.8 0.8 95 chr2R 8298592 intergenic mir-280 + chr2R 8298640 intergenic mir-280 + chr2R 8298687 intergenic mir-280 + chr2R_4_8295001 chr2R_8295001 RAL-208 609 chr2R 8330862 8330887 chr2R 8331348 8331373 roo 21 485 2.5 8.5 5.5 3.2 511 chr2R 8330862 intron pdm3 + chr2R 8331118 intron pdm3 + chr2R 8331373 intron pdm3 + chr2R_21_8330001 chr2R_8330001 RAL-208 610 chr2R 8339192 8339211 chr2R 8339290 8339309 5 98 5.0 4.5 4.8 0.9 117 chr2R 8339192 intron pdm3 + chr2R 8339250 intron pdm3 + chr2R 8339309 intron pdm3 + chr2R_5_8335001 chr2R_8335001 RAL-208 611 chr2R 8398206 8398241 chr2R 8402987 8403022 Doc 9 4781 4.5 2.0 3.2 2.1 4816 chr2R 8398206 intron CG2121 - chr2R 8400614 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_9_8400001 chr2R_8400001 RAL-208 612 chr2R 8518800 8518804 chr2R 12066269 12066273 6 3547469 12.5 0.0 6.2 0.8 3547473 chr2R 8518800 intron mtt - chr2R 10292536 intron CAP + chr2R 12066273 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-208 613 chr2R 8635928 8635934 chr2R 8636006 8636012 4 78 0.0 8.5 4.2 0.8 84 chr2R 8635928 intergenic not near genes chr2R 8635970 intergenic not near genes chr2R 8636012 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-208 614 chr2R 8671785 8671821 chr2R 8671862 8671898 11 77 2.0 1.5 1.8 3.9 113 chr2R 8671785 intron Acsl + chr2R 8671842 intron Acsl + chr2R 8671898 intron Acsl + chr2R_11_8670001 chr2R_8670001 RAL-208 615 chr2R 8722765 8722794 chr2R 8723006 8723035 pogo 8 241 4.0 3.5 3.8 1.7 270 chr2R 8722765 intron CG14767 - chr2R 8722900 intron CG14767 - chr2R 8723035 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-208 616 chr2R 8808294 8808312 chr2R 8808372 8808391 7 78 3.0 6.5 4.8 1.2 97 chr2R 8808294 intron sns + chr2R 8808342 intron sns + chr2R 8808391 intron sns + chr2R_7_8805001 chr2R_8805001 RAL-208 617 chr2R 8849241 8849264 chr2R 8849319 8849342 9 78 4.5 3.0 3.8 1.9 101 chr2R 8849241 intron sns + chr2R 8849292 intron sns + chr2R 8849342 intron sns + chr2R_9_8845001 chr2R_8845001 RAL-208 618 chr2R 8861274 8861284 chr2R 8861414 8861424 4 140 0.5 4.5 2.5 1.1 150 chr2R 8861274 intron RyR + chr2R 8861349 intron RyR + chr2R 8861424 intron RyR + chr2R_4_8860001 chr2R_8860001 RAL-208 619 chr2R 9151308 9151330 chr2R 9157778 9157800 Burdock 9 6470 6.5 7.5 7.0 1.1 6492 chr2R 9151308 3` UTR CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157800 intergenic CG8008 - chr2R_9_9150001 chr2R_9150001 RAL-208 620 chr2R 9198567 9198589 chr2R 9198648 9198670 8 81 2.5 0.0 1.2 3.6 103 chr2R 9198567 intron unpg + chr2R 9198618 intron unpg + chr2R 9198670 intron unpg + chr2R_8_9195001 chr2R_9195001 RAL-208 621 chr2R 9212696 9212718 chr2R 9213182 9213204 roo 7 486 5.5 3.0 4.2 1.3 508 chr2R 9212696 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213204 5` UTR CR45309 + chr2R_7_9210001 chr2R_9210001 RAL-208 622 chr2R 9236620 9236625 chr2R 9236707 9236712 4 87 0.0 5.5 2.8 1.1 92 chr2R 9236620 intron hig - chr2R 9236666 intron hig - chr2R 9236712 intron hig - chr2R_4_9235001 chr2R_9235001 RAL-208 623 chr2R 9268108 9268126 chr2R 9268186 9268204 5 78 1.0 4.5 2.8 1.3 96 chr2R 9268108 intron Pkn - chr2R 9268156 intron Pkn - chr2R 9268204 intron Pkn - chr2R_5_9265001 chr2R_9265001 RAL-208 624 chr2R 9272790 9272799 chr2R 9273109 9273118 10 319 1.5 0.0 0.8 5.6 328 chr2R 9272790 intron Pkn - chr2R 9272954 intron Pkn - chr2R 9273118 intron Pkn - chr2R_10_9270001 chr2R_9270001 RAL-208 625 chr2R 9480078 9480110 chr2R 9490609 9490641 roo 11 10531 3.5 4.0 3.8 2.3 10563 chr2R 9480078 intergenic not near genes chr2R 9485360 intergenic not near genes chr2R 9490641 intergenic not near genes chr2R_11_9485001 chr2R_9485001 RAL-208 626 chr2R 9510670 9510696 chr2R 9510786 9510812 6 116 1.0 4.0 2.5 1.7 142 chr2R 9510670 intron brp + chr2R 9510741 intron brp + chr2R 9510812 intron brp + chr2R_6_9510001 chr2R_9510001 RAL-208 627 chr2R 9548572 9548578 chr2R 9548800 9548805 7 227 7.5 2.5 5.0 1.2 233 chr2R 9548572 intergenic not near genes chr2R 9548688 intergenic not near genes chr2R 9548805 intergenic not near genes chr2R_7_9545001 chr2R_9545001 RAL-208 628 chr2R 9561828 9561850 chr2R 9561916 9561938 13 88 1.0 1.0 1.0 6.5 110 chr2R 9561828 3` UTR,intron CR45281 -,CG1809 + chr2R 9561883 3` UTR,intron CR45281 -,CG1809 + chr2R 9561938 3` UTR,intron CR45281 -,CG1809 + chr2R_13_9560001 chr2R_9560001 RAL-208 629 chr2R 9649182 9649209 chr2R 9649259 9649285 7 76 8.5 6.0 7.2 0.9 103 chr2R 9649182 intron Mmp2 - chr2R 9649234 intron Mmp2 - chr2R 9649285 intron Mmp2 - chr2R_7_9645001 chr2R_9645001 RAL-208 630 chr2R 9651031 9651068 chr2R 9651114 9651151 16 83 3.5 0.5 2.0 5.3 120 chr2R 9651031 intron Mmp2 - chr2R 9651091 intron Mmp2 - chr2R 9651151 intron Mmp2 - chr2R_16_9650001 chr2R_9650001 RAL-208 631 chr2R 9672074 9672083 chr2R 9672177 9672187 5 103 1.5 7.5 4.5 0.9 113 chr2R 9672074 intron Mmp2 - chr2R 9672130 intron Mmp2 - chr2R 9672187 intron Mmp2 - chr2R_5_9670001 chr2R_9670001 RAL-208 632 chr2R 9699408 9699438 chr2R 9699494 9699525 9 86 2.5 5.5 4.0 1.8 117 chr2R 9699408 intergenic not near genes chr2R 9699466 intergenic not near genes chr2R 9699525 intergenic not near genes chr2R_9_9695001 chr2R_9695001 RAL-208 633 chr2R 9726610 9726646 chr2R 9734161 9734197 17.6 7 7551 0.5 2.0 1.2 3.2 7587 chr2R 9726610 intron sqa - chr2R 9730404 intron sqa - chr2R 9734197 intron sqa - chr2R_7_9730001 chr2R_9730001 RAL-208 634 chr2R 9783144 9783179 chr2R 9783249 9783284 5 105 3.5 3.0 3.2 1.2 140 chr2R 9783144 intron CG1688 - chr2R 9783214 intron CG1688 - chr2R 9783284 intron CG1688 - chr2R_5_9780001 chr2R_9780001 RAL-208 635 chr2R 9786122 9786127 chr2R 9786541 9786542 7 419 2.0 3.0 2.5 2.0 420 chr2R 9786122 intron CG1688 - chr2R 9786332 intron CG1688 - chr2R 9786542 intron CG1688 - chr2R_7_9785001 chr2R_9785001 RAL-208 636 chr2R 9904299 9904321 chr2R 9904411 9904433 14 111 2.5 6.0 4.2 2.7 134 chr2R 9904299 intergenic not near genes chr2R 9904366 intergenic not near genes chr2R 9904433 intergenic not near genes chr2R_14_9900001 chr2R_9900001 RAL-208 637 chr2R 9945445 9945470 chr2R 9945641 9945666 BS 5 196 3.5 4.5 4.0 1.0 221 chr2R 9945445 intron Mef2 - chr2R 9945556 intron Mef2 - chr2R 9945666 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-208 638 chr2R 9954934 9954963 chr2R 9955016 9955045 16 82 1.0 5.0 3.0 4.0 111 chr2R 9954934 intron Mef2 - chr2R 9954990 intron Mef2 - chr2R 9955045 intron Mef2 - chr2R_16_9950001 chr2R_9950001 RAL-208 639 chr2R 10005571 10005585 chr2R 10005668 10005682 5 97 3.5 3.5 3.5 1.1 111 chr2R 10005571 intron Pka-R2 - chr2R 10005626 intron Pka-R2 - chr2R 10005682 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-208 640 chr2R 10005851 10005878 chr2R 10007016 10007043 1360 10 1165 3.5 3.0 3.2 2.4 1192 chr2R 10005851 intron Pka-R2 - chr2R 10006447 intron Pka-R2 - chr2R 10007043 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-208 641 chr2R 10008569 10008599 chr2R 10008647 10008687 7 81 3.0 0.0 1.5 2.8 118 chr2R 10008569 intron Pka-R2 - chr2R 10008628 intron Pka-R2 - chr2R 10008687 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-208 642 chr2R 10047813 10047842 chr2R 10047896 10047924 4 83 2.5 3.0 2.8 1.1 111 chr2R 10047813 intron oys - chr2R 10047868 intron oys - chr2R 10047924 intron oys - chr2R_4_10045001 chr2R_10045001 RAL-208 643 chr2R 10059265 10059282 chr2R 10059654 10059671 11 389 4.5 2.0 3.2 2.6 406 chr2R 10059265 intron magu + chr2R 10059468 intron magu + chr2R 10059671 intron magu + chr2R_11_10055001 chr2R_10055001 RAL-208 644 chr2R 10086922 10086932 chr2R 10087019 10087029 4 97 5.0 2.5 3.8 0.8 107 chr2R 10086922 intron,exon CG2269 +,sut4 - chr2R 10086976 intron,5` UTR CG2269 +,sut4 - chr2R 10087029 intron,5` UTR CG2269 +,sut4 - chr2R_4_10085001 chr2R_10085001 RAL-208 645 chr2R 10122740 10122749 chr2R 10122950 10122959 4 210 5.0 0.5 2.8 1.1 219 chr2R 10122740 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122959 intergenic Ccs - chr2R_4_10120001 chr2R_10120001 RAL-208 646 chr2R 10155856 10155885 chr2R 10155950 10155979 12 94 0.5 2.5 1.5 4.8 123 chr2R 10155856 intron KCNQ - chr2R 10155918 intron,3` UTR KCNQ -,mlt - chr2R 10155979 intron,3` UTR KCNQ -,mlt - chr2R_12_10155001 chr2R_10155001 RAL-208 647 chr2R 10176234 10176260 chr2R 10176627 10176653 16 393 3.5 4.0 3.8 3.3 419 chr2R 10176234 intron KCNQ - chr2R 10176444 intron KCNQ - chr2R 10176653 intron KCNQ - chr2R_16_10175001 chr2R_10175001 RAL-208 648 chr2R 10176881 10176908 chr2R 10186048 10186075 roo 5 9167 3.0 2.5 2.8 1.3 9194 chr2R 10176881 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186075 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-208 649 chr2R 10190446 10190466 chr2R 10190530 10190550 5 84 3.5 3.5 3.5 1.1 104 chr2R 10190446 intron KCNQ - chr2R 10190498 intron KCNQ - chr2R 10190550 intron KCNQ - chr2R_5_10190001 chr2R_10190001 RAL-208 650 chr2R 10216193 10216208 chr2R 10216271 10216285 5 77 3.0 3.5 3.2 1.2 92 chr2R 10216193 intron,intron CG12912 -,Hr46 - chr2R 10216239 intron,intron CG12912 -,Hr46 - chr2R 10216285 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-208 651 chr2R 10257167 10257188 chr2R 10257258 10257279 8 91 3.0 2.5 2.8 2.1 112 chr2R 10257167 intron CG12911 + chr2R 10257223 intron CG12911 + chr2R 10257279 intron CG12911 + chr2R_8_10255001 chr2R_10255001 RAL-208 652 chr2R 10266495 10266506 chr2R 10266584 10266597 5 91 5.0 2.0 3.5 1.1 102 chr2R 10266495 intron CG12910 + chr2R 10266546 intron CG12910 + chr2R 10266597 intron CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-208 653 chr2R 10307069 10307094 chr2R 10307190 10307215 18 121 3.5 5.5 4.5 3.3 146 chr2R 10307069 3` UTR JhI-1 - chr2R 10307142 3` UTR JhI-1 - chr2R 10307215 3` UTR JhI-1 - chr2R_18_10305001 chr2R_10305001 RAL-208 654 chr2R 10313311 10313336 chr2R 10313405 10313430 15 93 1.5 5.5 3.5 3.3 119 chr2R 10313311 intergenic not near genes chr2R 10313370 intergenic not near genes chr2R 10313430 intergenic Ndg + chr2R_15_10310001 chr2R_10310001 RAL-208 655 chr2R 10318522 10318546 chr2R 10318608 10318631 9 85 2.5 3.5 3.0 2.2 109 chr2R 10318522 intron Ndg + chr2R 10318576 intron Ndg + chr2R 10318631 intron Ndg + chr2R_9_10315001 chr2R_10315001 RAL-208 656 chr2R 10352677 10352704 chr2R 10352754 10352780 9 77 3.0 2.0 2.5 2.6 103 chr2R 10352677 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352780 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_9_10350001 chr2R_10350001 RAL-208 657 chr2R 10370440 10370453 chr2R 10370614 10370627 6 175 0.0 0.0 0.0 6.0 187 chr2R 10370440 intron CG42732 - chr2R 10370534 intron CG42732 - chr2R 10370627 intron CG42732 - chr2R_6_10370001 chr2R_10370001 RAL-208 658 chr2R 10372371 10372399 chr2R 10372463 10372491 8 91 4.0 1.5 2.8 2.1 120 chr2R 10372371 intron CG42732 - chr2R 10372431 intron CG42732 - chr2R 10372491 intron CG42732 - chr2R_8_10370001 chr2R_10370001 RAL-208 659 chr2R 10396719 10396749 chr2R 10397181 10397211 10 462 18.0 21.5 19.8 0.5 492 chr2R 10396719 intron CG42732 - chr2R 10396965 intron CG42732 - chr2R 10397211 intron CG42732 - chr2R_10_10395001 chr2R_10395001 RAL-208 660 chr2R 10429019 10429048 chr2R 10429095 10429122 17 76 1.5 1.5 1.5 6.8 103 chr2R 10429019 intergenic not near genes chr2R 10429070 intergenic not near genes chr2R 10429122 intergenic not near genes chr2R_17_10425001 chr2R_10425001 RAL-208 661 chr2R 10432107 10432124 chr2R 10432185 10432202 5 78 2.5 2.0 2.2 1.6 95 chr2R 10432107 intron RanBPM + chr2R 10432154 intron RanBPM + chr2R 10432202 intron RanBPM + chr2R_5_10430001 chr2R_10430001 RAL-208 662 chr2R 10454100 10454128 chr2R 10454177 10454205 5 77 6.0 2.5 4.2 1.0 105 chr2R 10454100 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-208 663 chr2R 10585578 10585590 chr2R 10594161 10594173 Tirant 4 8583 4.5 2.5 3.5 0.9 8595 chr2R 10585578 intron psq + chr2R 10589876 intron psq + chr2R 10594173 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-208 664 chr2R 10622358 10622379 chr2R 10637123 10637144 mdg1 6 14765 3.0 2.5 2.8 1.6 14786 chr2R 10622358 intron CG11883 + chr2R 10629751 intron CG11883 + chr2R 10637144 intron CG11883 + chr2R_6_10625001 chr2R_10625001 RAL-208 665 chr2R 10644058 10644086 chr2R 10644136 10644164 14 78 2.5 2.0 2.2 4.4 106 chr2R 10644058 intron Git - chr2R 10644111 intron Git - chr2R 10644164 intron Git - chr2R_14_10640001 chr2R_10640001 RAL-208 666 chr2R 10727503 10727527 chr2R 10727600 10727625 10 98 0.5 5.0 2.8 2.6 122 chr2R 10727503 intron Rab3 - chr2R 10727564 intron Rab3 - chr2R 10727625 intron Rab3 - chr2R_10_10725001 chr2R_10725001 RAL-208 667 chr2R 10790144 10790177 chr2R 10790232 10790264 6 87 1.5 5.0 3.2 1.4 120 chr2R 10790144 intron CG33144 - chr2R 10790204 intron CG33144 - chr2R 10790264 intron CG33144 - chr2R_6_10790001 chr2R_10790001 RAL-208 668 chr2R 10805777 10805796 chr2R 10805875 10805894 8 97 2.5 4.0 3.2 1.9 117 chr2R 10805777 intron wde - chr2R 10805836 intron wde - chr2R 10805894 intron wde - chr2R_8_10805001 chr2R_10805001 RAL-208 669 chr2R 10937854 10937874 chr2R 10938033 10938051 11 179 4.0 4.5 4.2 2.1 197 chr2R 10937854 intergenic not near genes chr2R 10937952 intergenic Spn47C - chr2R 10938051 intergenic Spn47C - chr2R_11_10935001 chr2R_10935001 RAL-208 670 chr2R 10948039 10948060 chr2R 10955588 10955611 17.6 10 7551 0.0 5.0 2.5 2.9 7572 chr2R 10948039 intergenic not near genes chr2R 10951825 intergenic not near genes chr2R 10955611 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-208 671 chr2R 10979662 10979686 chr2R 10980134 10980158 297 8 472 0.0 4.5 2.2 2.5 496 chr2R 10979662 intergenic not near genes chr2R 10979910 intergenic not near genes chr2R 10980158 intergenic not near genes chr2R_8_10975001 chr2R_10975001 RAL-208 672 chr2R 11009816 11009832 chr2R 11018990 11019006 roo 6 9174 8.0 2.5 5.2 1.0 9190 chr2R 11009816 intron luna - chr2R 11014411 intron luna - chr2R 11019006 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-208 673 chr2R 11019879 11019907 chr2R 11024944 11024973 jockey 5 5065 2.0 4.0 3.0 1.2 5094 chr2R 11019879 intron luna - chr2R 11022426 intron luna - chr2R 11024973 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-208 674 chr2R 11064703 11064711 chr2R 11064786 11064794 9 82 6.0 1.5 3.8 1.9 91 chr2R 11064703 intron luna - chr2R 11064748 intron luna - chr2R 11064794 intron luna - chr2R_9_11060001 chr2R_11060001 RAL-208 675 chr2R 11071557 11071590 chr2R 11071662 11071695 11 105 5.5 1.5 3.5 2.4 138 chr2R 11071557 intron luna - chr2R 11071626 intron luna - chr2R 11071695 intron luna - chr2R_11_11070001 chr2R_11070001 RAL-208 676 chr2R 11097358 11097387 chr2R 11097463 11097491 18 105 3.5 3.0 3.2 4.3 133 chr2R 11097358 intron luna - chr2R 11097424 intron luna - chr2R 11097491 intron luna - chr2R_18_11095001 chr2R_11095001 RAL-208 677 chr2R 11129819 11129844 chr2R 11129901 11129926 12 83 4.0 4.0 4.0 2.4 107 chr2R 11129819 intergenic not near genes chr2R 11129872 intergenic not near genes chr2R 11129926 intergenic not near genes chr2R_12_11125001 chr2R_11125001 RAL-208 678 chr2R 11158871 11158892 chr2R 11159040 11159061 4 169 3.0 2.5 2.8 1.1 190 chr2R 11158871 intron CG13229 - chr2R 11158966 intron CG13229 - chr2R 11159061 intron CG13229 - chr2R_4_11155001 chr2R_11155001 RAL-208 679 chr2R 11207821 11207842 chr2R 11208012 11208034 BS 9 192 9.0 7.0 8.0 1.0 213 chr2R 11207821 intron shn + chr2R 11207928 intron shn + chr2R 11208034 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-208 680 chr2R 11263841 11263842 chr2R 11263956 11263957 4 116 0.0 12.0 6.0 0.6 116 chr2R 11263841 intergenic not near genes chr2R 11263899 intergenic not near genes chr2R 11263957 intergenic not near genes chr2R_4_11260001 chr2R_11260001 RAL-208 681 chr2R 11276806 11276816 chr2R 11276971 11276984 7 167 7.0 4.0 5.5 1.1 178 chr2R 11276806 intergenic not near genes chr2R 11276895 intergenic not near genes chr2R 11276984 intergenic not near genes chr2R_7_11275001 chr2R_11275001 RAL-208 682 chr2R 11391243 11391276 chr2R 11391319 11391352 17 76 0.5 4.0 2.2 5.3 109 chr2R 11391243 intron sprt - chr2R 11391298 intron sprt - chr2R 11391352 intron sprt - chr2R_17_11390001 chr2R_11390001 RAL-208 683 chr2R 11415533 11415549 chr2R 11418680 11418697 opus 11 3148 3.5 7.5 5.5 1.7 3164 chr2R 11415533 intron Drip - chr2R 11417115 intron Drip - chr2R 11418697 intron Drip - chr2R_11_11415001 chr2R_11415001 RAL-208 684 chr2R 11419870 11419897 chr2R 11419997 11420027 18 130 3.0 3.0 3.0 4.5 157 chr2R 11419870 intron Drip - chr2R 11419948 intron Drip - chr2R 11420027 intron Drip - chr2R_18_11415001 chr2R_11415001 RAL-208 685 chr2R 11485111 11485140 chr2R 11485193 11485222 13 82 1.0 3.5 2.2 4.1 111 chr2R 11485111 intron inv + chr2R 11485166 intron inv + chr2R 11485222 intron inv + chr2R_13_11485001 chr2R_11485001 RAL-208 686 chr2R 11561964 11561975 chr2R 11562042 11562053 9 77 3.5 10.5 7.0 1.1 89 chr2R 11561964 intergenic not near genes chr2R 11562008 intergenic not near genes chr2R 11562053 intergenic not near genes chr2R_9_11560001 chr2R_11560001 RAL-208 687 chr2R 11614623 11614800 chr2R 11614711 11614888 11 88 5.5 5.0 5.2 1.8 265 chr2R 11614623 intron tou - chr2R 11614756 intron tou - chr2R 11614888 intron tou - chr2R_11_11610001 chr2R_11610001 RAL-208 688 chr2R 11672681 11672710 chr2R 11676123 11676158 4 3445 13.5 11.0 12.2 0.3 3477 chr2R 11672681 intron,intron Roc2 -,Tret1-1 + chr2R 11674420 intron,exon Roc2 -,Tret1-1 + chr2R 11676158 intron,intron Roc2 -,Tret1-2 + chr2R_4_11670001 chr2R_11670001 RAL-208 689 chr2R 11677880 11677894 chr2R 11677957 11677972 6 78 3.0 5.0 4.0 1.2 92 chr2R 11677880 intron,exon Roc2 -,Tret1-2 + chr2R 11677926 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677972 intron,3` UTR Roc2 -,Tret1-2 + chr2R_6_11675001 chr2R_11675001 RAL-208 690 chr2R 11945892 11945914 chr2R 11945969 11945987 9 76 2.5 5.0 3.8 1.9 95 chr2R 11945892 intron CG13188 + chr2R 11945940 intron CG13188 + chr2R 11945987 intron CG13188 + chr2R_9_11945001 chr2R_11945001 RAL-208 691 chr2R 8518784 8518804 chr2R 12066179 12066200 14 3547395 12.5 6.5 9.5 1.3 3547416 chr2R 8518784 intron mtt - chr2R 10292492 intron CAP + chr2R 12066200 intron CG8888 - chr2R_14_10290001 chr2R_10290001 RAL-208 692 chr2R 12186002 12186037 chr2R 12186097 12186131 15 95 3.0 8.0 5.5 2.3 129 chr2R 12186002 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_15_12185001 chr2R_12185001 RAL-208 693 chr2R 12187471 12187508 chr2R 12190087 12190124 47 2617 85.0 75.5 80.2 0.6 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_47_12185001 chr2R_12185001 RAL-208 694 chr2R 12210135 12210162 chr2R 12210216 12210243 8 81 4.5 5.5 5.0 1.3 108 chr2R 12210135 exon Sr-CII - chr2R 12210189 intron Sr-CII - chr2R 12210243 intron Sr-CII - chr2R_8_12210001 chr2R_12210001 RAL-208 695 chr2R 12286361 12286389 chr2R 12286442 12286469 15 81 3.5 1.0 2.2 4.7 108 chr2R 12286361 intron CG42700 + chr2R 12286415 intron CG42700 + chr2R 12286469 intron CG42700 + chr2R_15_12285001 chr2R_12285001 RAL-208 696 chr2R 12363382 12363416 chr2R 12363814 12363848 19 432 0.5 5.0 2.8 5.0 466 chr2R 12363382 intergenic CG30043 + chr2R 12363615 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_19_12360001 chr2R_12360001 RAL-208 697 chr2R 12417464 12417485 chr2R 12417544 12417563 5 78 1.0 6.0 3.5 1.1 99 chr2R 12417464 exon CG13157 + chr2R 12417514 exon CG13157 + chr2R 12417563 exon CG13157 + chr2R_5_12415001 chr2R_12415001 RAL-208 698 chr2R 12479146 12479153 chr2R 12479235 12479238 4 88 3.0 7.0 5.0 0.7 92 chr2R 12479146 intron Dh44-R2 + chr2R 12479192 intron Dh44-R2 + chr2R 12479238 intron Dh44-R2 + chr2R_4_12475001 chr2R_12475001 RAL-208 699 chr2R 12481145 12481158 chr2R 12482949 12482961 roo 4 1804 0.5 4.0 2.2 1.2 1816 chr2R 12481145 exon Dh44-R2 + chr2R 12482053 intron Dh44-R2 + chr2R 12482961 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-208 700 chr2R 12492101 12492123 chr2R 12492185 12492217 8 92 1.5 0.0 0.8 4.4 116 chr2R 12492101 intron fdl - chr2R 12492159 intron fdl - chr2R 12492217 intron fdl - chr2R_8_12490001 chr2R_12490001 RAL-208 701 chr2R 12501692 12501721 chr2R 12503854 12503883 Rt1c 4 2162 2.0 3.0 2.5 1.1 2191 chr2R 12501692 intron fdl - chr2R 12502788 intron fdl - chr2R 12503883 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-208 702 chr2R 12504147 12504177 chr2R 12504223 12504254 8 77 4.0 5.0 4.5 1.5 107 chr2R 12504147 intron fdl - chr2R 12504200 intron fdl - chr2R 12504254 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-208 703 chr2R 12565582 12565597 chr2R 12565965 12565980 6 383 0.0 3.0 1.5 2.4 398 chr2R 12565582 intergenic not near genes chr2R 12565781 intergenic Cyp301a1 + chr2R 12565980 intergenic Cyp301a1 + chr2R_6_12565001 chr2R_12565001 RAL-208 704 chr2R 12666026 12666046 chr2R 12666114 12666134 5 88 6.0 1.0 3.5 1.1 108 chr2R 12666026 intron nemy - chr2R 12666080 intron nemy - chr2R 12666134 intron nemy - chr2R_5_12665001 chr2R_12665001 RAL-208 705 chr2R 12707521 12707548 chr2R 12715887 12715914 roo 9 8366 0.0 4.5 2.2 2.8 8393 chr2R 12707521 intron CG42663 + chr2R 12711718 intron CG42663 + chr2R 12715914 intron CG42663 + chr2R_9_12710001 chr2R_12710001 RAL-208 706 chr2R 12789304 12789319 chr2R 12797665 12797680 roo 8 8361 2.0 0.5 1.2 3.6 8376 chr2R 12789304 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797680 intron,3` UTR sca +,CR45137 - chr2R_8_12790001 chr2R_12790001 RAL-208 707 chr2R 13055163 13055181 chr2R 13055243 13055261 4 80 2.0 5.0 3.5 0.9 98 chr2R 13055163 intergenic Drl-2 - chr2R 13055212 intergenic Drl-2 - chr2R 13055261 3` UTR Drl-2 - chr2R_4_13055001 chr2R_13055001 RAL-208 708 chr2R 13061351 13061380 chr2R 13061432 13061461 9 81 4.0 2.0 3.0 2.2 110 chr2R 13061351 intron Drl-2 - chr2R 13061406 intron Drl-2 - chr2R 13061461 intron Drl-2 - chr2R_9_13060001 chr2R_13060001 RAL-208 709 chr2R 13136837 13136869 chr2R 13141634 13141666 Doc 10 4798 3.5 6.0 4.8 1.7 4829 chr2R 13136837 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_10_13135001 chr2R_13135001 RAL-208 710 chr2R 13309665 13309682 chr2R 13309783 13309800 12 118 4.0 0.0 2.0 4.0 135 chr2R 13309665 intergenic not near genes chr2R 13309732 intergenic not near genes chr2R 13309800 intergenic not near genes chr2R_12_13305001 chr2R_13305001 RAL-208 711 chr2R 13359281 13359314 chr2R 13359373 13359406 14 92 2.0 3.0 2.5 4.0 125 chr2R 13359281 intergenic not near genes chr2R 13359344 intergenic not near genes chr2R 13359406 intergenic not near genes chr2R_14_13355001 chr2R_13355001 RAL-208 712 chr2R 13389014 13389041 chr2R 13389314 13389343 16 300 25.5 38.0 31.8 0.5 329 chr2R 13389014 intergenic CG43691 - chr2R 13389178 intergenic CG43691 - chr2R 13389343 intergenic CG43691 - chr2R_16_13385001 chr2R_13385001 RAL-208 713 chr2R 13431489 13431500 chr2R 13431568 13431579 7 79 5.5 1.5 3.5 1.6 90 chr2R 13431489 intron CG42321 - chr2R 13431534 intron CG42321 - chr2R 13431579 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-208 714 chr2R 13432943 13432945 chr2R 13433019 13433021 4 76 3.0 4.0 3.5 0.9 78 chr2R 13432943 intron CG42321 - chr2R 13432982 intron CG42321 - chr2R 13433021 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-208 715 chr2R 13439112 13439137 chr2R 13439227 13439274 4 132 2.5 0.0 1.2 1.8 162 chr2R 13439112 intergenic CG42321 -,cnn - chr2R 13439193 intergenic cnn -,CG42321 - chr2R 13439274 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-208 716 chr2R 13574399 13574429 chr2R 13574480 13574510 8 81 2.5 4.5 3.5 1.8 111 chr2R 13574399 intergenic CG42808 - chr2R 13574454 intergenic CG42808 -,CR44365 + chr2R 13574510 intergenic CG42808 -,CR44365 + chr2R_8_13570001 chr2R_13570001 RAL-208 717 chr2R 13580498 13580532 chr2R 13580848 13580882 jockey 7 350 2.0 4.0 3.0 1.8 384 chr2R 13580498 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580882 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-208 718 chr2R 13632305 13632314 chr2R 13632393 13632402 4 88 9.0 6.5 7.8 0.5 97 chr2R 13632305 intron fas + chr2R 13632354 intron fas + chr2R 13632402 intron fas + chr2R_4_13630001 chr2R_13630001 RAL-208 719 chr2R 13684265 13684272 chr2R 13684343 13684350 7 78 4.5 1.5 3.0 1.8 85 chr2R 13684265 intron fas + chr2R 13684308 intron fas + chr2R 13684350 intron fas + chr2R_7_13680001 chr2R_13680001 RAL-208 720 chr2R 13768980 13769010 chr2R 13769079 13769109 13 99 1.5 5.0 3.2 3.1 129 chr2R 13768980 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_13_13765001 chr2R_13765001 RAL-208 721 chr2R 13888760 13888788 chr2R 13888837 13888862 11 76 2.5 0.0 1.2 5.0 102 chr2R 13888760 intron shot - chr2R 13888811 intron shot - chr2R 13888862 intron shot - chr2R_11_13885001 chr2R_13885001 RAL-208 722 chr2R 13925848 13925855 chr2R 13926024 13926031 4 176 6.5 4.5 5.5 0.6 183 chr2R 13925848 intron shot - chr2R 13925940 intron shot - chr2R 13926031 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-208 723 chr2R 13995232 13995240 chr2R 13995319 13995324 4 85 0.0 3.5 1.8 1.4 92 chr2R 13995232 intron mam + chr2R 13995278 intron mam + chr2R 13995324 intron mam + chr2R_4_13995001 chr2R_13995001 RAL-208 724 chr2R 14014989 14014995 chr2R 14015783 14015789 4 794 2.0 4.5 3.2 1.0 800 chr2R 14014989 intron mam + chr2R 14015389 intron mam + chr2R 14015789 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-208 725 chr2R 14018158 14018190 chr2R 14018239 14018274 14 83 2.5 3.5 3.0 3.5 116 chr2R 14018158 intron mam + chr2R 14018216 intron mam + chr2R 14018274 intron mam + chr2R_14_14015001 chr2R_14015001 RAL-208 726 chr2R 14168367 14168393 chr2R 14168456 14168480 8 88 4.0 1.0 2.5 2.3 113 chr2R 14168367 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168424 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168480 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_8_14165001 chr2R_14165001 RAL-208 727 chr2R 14277580 14277611 chr2R 14277662 14277692 15 81 3.5 7.0 5.2 2.4 112 chr2R 14277580 5` UTR Ih + chr2R 14277636 5` UTR Ih + chr2R 14277692 5` UTR Ih + chr2R_15_14275001 chr2R_14275001 RAL-208 728 chr2R 14294829 14294860 chr2R 14294909 14294940 14 80 6.5 3.0 4.8 2.4 111 chr2R 14294829 intron Ih + chr2R 14294884 intron Ih + chr2R 14294940 intron Ih + chr2R_14_14290001 chr2R_14290001 RAL-208 729 chr2R 14357557 14357576 chr2R 14357647 14357666 11 90 4.5 3.0 3.8 2.3 109 chr2R 14357557 intergenic CG8617 -,Arc1 - chr2R 14357612 intergenic Arc1 -,CG8617 - chr2R 14357666 intergenic Arc1 -,CG8617 - chr2R_11_14355001 chr2R_14355001 RAL-208 730 chr2R 14386432 14386467 chr2R 14386519 14386554 17 86 1.5 3.5 2.5 4.9 122 chr2R 14386432 intergenic not near genes chr2R 14386493 intergenic not near genes chr2R 14386554 intergenic not near genes chr2R_17_14385001 chr2R_14385001 RAL-208 731 chr2R 14467298 14467326 chr2R 14476450 14476477 roo 12 9152 1.0 5.0 3.0 3.0 9179 chr2R 14467298 intergenic not near genes chr2R 14471888 intergenic not near genes chr2R 14476477 5` UTR CR44462 + chr2R_12_14470001 chr2R_14470001 RAL-208 732 chr2R 14524847 14524872 chr2R 14524944 14524969 7 97 6.0 0.0 3.0 1.8 122 chr2R 14524847 intergenic not near genes chr2R 14524908 intergenic not near genes chr2R 14524969 intergenic not near genes chr2R_7_14520001 chr2R_14520001 RAL-208 733 chr2R 14530769 14530788 chr2R 14530847 14530867 7 79 1.5 3.0 2.2 2.2 98 chr2R 14530769 intron ttv + chr2R 14530818 intron ttv + chr2R 14530867 intron ttv + chr2R_7_14530001 chr2R_14530001 RAL-208 734 chr2R 14550427 14550442 chr2R 14550512 14550529 8 87 0.0 2.5 1.2 3.6 102 chr2R 14550427 intron ttv + chr2R 14550478 intron ttv + chr2R 14550529 intron ttv + chr2R_8_14550001 chr2R_14550001 RAL-208 735 chr2R 14565556 14565590 chr2R 14565633 14565667 16 77 0.5 3.0 1.8 5.7 111 chr2R 14565556 intron ttv + chr2R 14565612 intron ttv + chr2R 14565667 intron ttv + chr2R_16_14565001 chr2R_14565001 RAL-208 736 chr2R 14566448 14566478 chr2R 14566535 14566565 5 87 2.5 3.0 2.8 1.3 117 chr2R 14566448 intron ttv + chr2R 14566506 intron ttv + chr2R 14566565 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-208 737 chr2R 14576867 14576887 chr2R 14577029 14577049 8 162 1.0 1.0 1.0 4.0 182 chr2R 14576867 intron ttv + chr2R 14576958 intron ttv + chr2R 14577049 intron ttv + chr2R_8_14575001 chr2R_14575001 RAL-208 738 chr2R 14653907 14653926 chr2R 14654007 14654024 7 103 4.5 10.5 7.5 0.8 117 chr2R 14653907 intergenic not near genes chr2R 14653966 intergenic not near genes chr2R 14654024 intergenic not near genes chr2R_7_14650001 chr2R_14650001 RAL-208 739 chr2R 14707070 14707098 chr2R 14707149 14707178 19 80 1.0 1.5 1.2 8.6 108 chr2R 14707070 intron mspo - chr2R 14707124 intron mspo - chr2R 14707178 intron mspo - chr2R_19_14705001 chr2R_14705001 RAL-208 740 chr2R 14786034 14786063 chr2R 14786126 14786156 11 93 0.0 0.0 0.0 11.0 122 chr2R 14786034 intron kn - chr2R 14786095 intron kn - chr2R 14786156 intron kn - chr2R_11_14785001 chr2R_14785001 RAL-208 741 chr2R 14796345 14796361 chr2R 14796442 14796458 8 97 2.0 4.0 3.0 2.0 113 chr2R 14796345 intron kn - chr2R 14796402 intron kn - chr2R 14796458 intron kn - chr2R_8_14795001 chr2R_14795001 RAL-208 742 chr2R 14799873 14799889 chr2R 14799948 14799965 4 76 1.5 4.0 2.8 1.1 92 chr2R 14799873 intron kn - chr2R 14799919 intron kn - chr2R 14799965 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-208 743 chr2R 14855038 14855065 chr2R 14855129 14855157 7 92 2.5 1.5 2.0 2.3 119 chr2R 14855038 5` UTR Ciao1 - chr2R 14855098 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_7_14855001 chr2R_14855001 RAL-208 744 chr2R 14884742 14884775 chr2R 14884836 14884869 14 94 4.5 1.5 3.0 3.5 127 chr2R 14884742 intergenic not near genes chr2R 14884806 intergenic Cyp6a21 - chr2R 14884869 intergenic Cyp6a21 - chr2R_14_14880001 chr2R_14880001 RAL-208 745 chr2R 14889209 14889229 chr2R 14897817 14897837 Max-element 6 8608 3.5 0.0 1.8 2.1 8628 chr2R 14889209 intergenic Cyp6a8 - chr2R 14893523 intergenic not near genes chr2R 14897837 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-208 746 chr2R 14911705 14911727 chr2R 14911828 14911850 8 123 1.0 2.0 1.5 3.2 145 chr2R 14911705 intron CG10249 - chr2R 14911778 intron CG10249 - chr2R 14911850 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-208 747 chr2R 14922145 14922168 chr2R 14922219 14922244 9 75 2.5 3.5 3.0 2.2 99 chr2R 14922145 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922244 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-208 748 chr2R 14987389 14987408 chr2R 14987533 14987552 7 144 7.5 2.5 5.0 1.2 163 chr2R 14987389 intron pcs + chr2R 14987470 intron pcs + chr2R 14987552 intron pcs + chr2R_7_14985001 chr2R_14985001 RAL-208 749 chr2R 15004726 15004757 chr2R 15005055 15005085 jockey 12 329 1.0 5.5 3.2 2.9 359 chr2R 15004726 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005085 intergenic not near genes chr2R_12_15000001 chr2R_15000001 RAL-208 750 chr2R 15015455 15015483 chr2R 15022878 15022907 mdg1 12 7424 3.5 2.5 3.0 3.0 7452 chr2R 15015455 intron hbs + chr2R 15019181 intron hbs + chr2R 15022907 intron hbs + chr2R_12_15015001 chr2R_15015001 RAL-208 751 chr2R 15084986 15085010 chr2R 15092035 15092057 297 8 7049 2.5 3.0 2.8 2.1 7071 chr2R 15084986 intergenic not near genes chr2R 15088522 intergenic not near genes chr2R 15092057 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 RAL-208 752 chr2R 15119321 15119321 chr2R 15127800 15127802 Tirant 4 8480 6.5 2.0 4.2 0.8 8481 chr2R 15119321 intron chn + chr2R 15123562 intron chn + chr2R 15127802 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-208 753 chr2R 15118977 15118996 chr2R 15129524 15129546 Tirant 10 10546 25.5 18.0 21.8 0.4 10569 chr2R 15118977 intron chn + chr2R 15124262 intron chn + chr2R 15129546 intron chn + chr2R_10_15120001 chr2R_15120001 RAL-208 754 chr2R 15133485 15133512 chr2R 15133562 15133591 15 79 3.0 4.5 3.8 3.1 106 chr2R 15133485 intron chn + chr2R 15133538 intron chn + chr2R 15133591 intron chn + chr2R_15_15130001 chr2R_15130001 RAL-208 755 chr2R 15137969 15138003 chr2R 15138049 15138085 5 80 2.5 0.0 1.2 2.3 116 chr2R 15137969 intron chn + chr2R 15138027 intron chn + chr2R 15138085 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-208 756 chr2R 15296161 15296164 chr2R 15296244 15296247 4 83 2.5 3.0 2.8 1.1 86 chr2R 15296161 intron Trpm - chr2R 15296204 intron Trpm - chr2R 15296247 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-208 757 chr2R 15375205 15375355 chr2R 15376003 15376172 5 813 0.5 1.0 0.8 2.8 967 chr2R 15375205 intergenic not near genes chr2R 15375688 intergenic not near genes chr2R 15376172 intergenic dup - chr2R_5_15375001 chr2R_15375001 RAL-208 758 chr2R 15555427 15555438 chr2R 15555820 15555830 6 393 4.5 6.5 5.5 0.9 403 chr2R 15555427 intergenic CG12963 + chr2R 15555628 exon CG12963 + chr2R 15555830 intron CG12963 + chr2R_6_15555001 chr2R_15555001 RAL-208 759 chr2R 15645686 15645705 chr2R 15645780 15645801 5 95 2.0 0.0 1.0 2.5 115 chr2R 15645686 intron CG42524 + chr2R 15645744 intron CG42524 + chr2R 15645801 intron CG42524 + chr2R_5_15645001 chr2R_15645001 RAL-208 760 chr2R 15656031 15656067 chr2R 15656122 15656158 4 91 0.0 0.0 0.0 4.0 127 chr2R 15656031 intron CG42524 + chr2R 15656094 intron CG42524 + chr2R 15656158 intron CG42524 + chr2R_4_15655001 chr2R_15655001 RAL-208 761 chr2R 15685363 15685395 chr2R 15685465 15685498 10 102 4.5 2.0 3.2 2.4 135 chr2R 15685363 intron,exon Ranbp11 +,CG30082 - chr2R 15685430 intron,intron Ranbp11 +,CG30082 - chr2R 15685498 intron,intron Ranbp11 +,CG30082 - chr2R_10_15685001 chr2R_15685001 RAL-208 762 chr2R 15700236 15700270 chr2R 15700351 15700385 11 115 4.0 5.5 4.8 1.9 149 chr2R 15700236 intron,5` UTR CG30080 -,CG42662 - chr2R 15700310 intron,5` UTR CG30080 -,CG42662 - chr2R 15700385 intron,5` UTR CG30080 -,CG42662 - chr2R_11_15700001 chr2R_15700001 RAL-208 763 chr2R 15794869 15794901 chr2R 15794958 15794991 4 90 4.5 0.0 2.2 1.2 122 chr2R 15794869 intron,5` UTR Zasp52 -,tun + chr2R 15794930 intron,5` UTR Zasp52 -,tun + chr2R 15794991 intron,intron Zasp52 -,tun + chr2R_4_15790001 chr2R_15790001 RAL-208 764 chr2R 15833521 15833547 chr2R 15833605 15833632 7 86 6.5 4.0 5.2 1.1 111 chr2R 15833521 intron,intron tun +,Poxn - chr2R 15833576 intron,intron tun +,Poxn - chr2R 15833632 intron,intron tun +,Poxn - chr2R_7_15830001 chr2R_15830001 RAL-208 765 chr2R 15847613 15847631 chr2R 15847689 15847708 7 77 8.5 4.5 6.5 0.9 95 chr2R 15847613 intron tun + chr2R 15847660 intron tun + chr2R 15847708 intron tun + chr2R_7_15845001 chr2R_15845001 RAL-208 766 chr2R 16054956 16054961 chr2R 16055039 16055044 4 83 4.0 4.5 4.2 0.8 88 chr2R 16054956 intron CG8405 + chr2R 16055000 intron CG8405 + chr2R 16055044 intron CG8405 + chr2R_4_16055001 chr2R_16055001 RAL-208 767 chr2R 16245424 16245428 chr2R 16245518 16245522 5 94 0.5 2.0 1.2 2.3 98 chr2R 16245424 intron CngA - chr2R 16245473 intron CngA - chr2R 16245522 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-208 768 chr2R 16352846 16352868 chr2R 16352926 16352951 5 81 4.0 0.0 2.0 1.7 105 chr2R 16352846 intergenic not near genes chr2R 16352898 intergenic not near genes chr2R 16352951 intergenic not near genes chr2R_5_16350001 chr2R_16350001 RAL-208 769 chr2R 16372815 16372839 chr2R 16372962 16372986 6 147 1.0 6.0 3.5 1.3 171 chr2R 16372815 intergenic not near genes chr2R 16372900 intergenic not near genes chr2R 16372986 intergenic not near genes chr2R_6_16370001 chr2R_16370001 RAL-208 770 chr2R 16503877 16503901 chr2R 16503967 16503991 7 90 0.0 4.5 2.2 2.2 114 chr2R 16503877 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16503991 intron Sema-2a + chr2R_7_16500001 chr2R_16500001 RAL-208 771 chr2R 16571881 16571904 chr2R 16571976 16571998 10 94 2.5 3.0 2.8 2.6 117 chr2R 16571881 intergenic CG4927 + chr2R 16571940 intergenic CG4927 + chr2R 16571998 intergenic CG4927 + chr2R_10_16570001 chr2R_16570001 RAL-208 772 chr2R 16618727 16618740 chr2R 16618803 16618816 5 76 0.0 4.5 2.2 1.6 89 chr2R 16618727 intron CG5065 + chr2R 16618772 intron CG5065 + chr2R 16618816 5` UTR CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-208 773 chr2R 16723927 16723951 chr2R 16724007 16724031 9 80 1.5 1.5 1.5 3.6 104 chr2R 16723927 intron CG30463 - chr2R 16723979 intron CG30463 - chr2R 16724031 intron CG30463 - chr2R_9_16720001 chr2R_16720001 RAL-208 774 chr2R 16734979 16735001 chr2R 16735079 16735101 8 100 4.0 4.5 4.2 1.5 122 chr2R 16734979 intergenic not near genes chr2R 16735040 intergenic not near genes chr2R 16735101 intergenic not near genes chr2R_8_16735001 chr2R_16735001 RAL-208 775 chr2R 16775658 16775673 chr2R 16775925 16775940 7 267 3.5 5.5 4.5 1.3 282 chr2R 16775658 3` UTR Arp53D + chr2R 16775799 intergenic Arp53D + chr2R 16775940 intergenic Arp53D + chr2R_7_16775001 chr2R_16775001 RAL-208 776 chr2R 16787474 16787488 chr2R 16787556 16787569 8 82 2.0 0.0 1.0 4.0 95 chr2R 16787474 intron CG5522 + chr2R 16787522 intron CG5522 + chr2R 16787569 intron CG5522 + chr2R_8_16785001 chr2R_16785001 RAL-208 777 chr2R 16880034 16880064 chr2R 16880111 16880141 11 77 2.0 0.5 1.2 5.0 107 chr2R 16880034 intron CG8910 - chr2R 16880088 intron CG8910 - chr2R 16880141 intron CG8910 - chr2R_11_16880001 chr2R_16880001 RAL-208 778 chr2R 16910230 16910247 chr2R 16910329 16910344 14 98 3.5 5.5 4.5 2.5 114 chr2R 16910230 intergenic not near genes chr2R 16910287 intergenic not near genes chr2R 16910344 intergenic not near genes chr2R_14_16910001 chr2R_16910001 RAL-208 779 chr2R 17046111 17046133 chr2R 17046686 17046710 9 575 9.5 5.5 7.5 1.1 599 chr2R 17046111 exon CG9640 + chr2R 17046410 exon CG9640 + chr2R 17046710 3` UTR CG9640 + chr2R_9_17045001 chr2R_17045001 RAL-208 780 chr2R 17147243 17147267 chr2R 17152274 17152298 jockey 4 5031 4.5 5.0 4.8 0.7 5055 chr2R 17147243 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152298 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-208 781 chr2R 17236517 17236532 chr2R 17241720 17241736 copia 6 5204 3.5 6.5 5.0 1.0 5219 chr2R 17236517 intron mbl + chr2R 17239126 intron mbl + chr2R 17241736 intron mbl + chr2R_6_17235001 chr2R_17235001 RAL-208 782 chr2R 17459009 17459031 chr2R 17459093 17459116 8 85 4.5 3.5 4.0 1.6 107 chr2R 17459009 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459116 intron CG14478 + chr2R_8_17455001 chr2R_17455001 RAL-208 783 chr2R 17485916 17485950 chr2R 17490686 17490720 F-element 17 4770 8.0 2.0 5.0 2.8 4804 chr2R 17485916 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488318 intron NT5E-2 + chr2R 17490720 intron NT5E-2 + chr2R_17_17485001 chr2R_17485001 RAL-208 784 chr2R 17519638 17519671 chr2R 17519721 17519755 7 84 3.0 1.5 2.2 2.2 117 chr2R 17519638 3` UTR Patronin - chr2R 17519696 3` UTR Patronin - chr2R 17519755 3` UTR Patronin - chr2R_7_17515001 chr2R_17515001 RAL-208 785 chr2R 17713114 17713138 chr2R 17713455 17713481 8 342 1.0 5.0 3.0 2.0 367 chr2R 17713114 intron CG6424 - chr2R 17713298 intron CG6424 - chr2R 17713481 intron CG6424 - chr2R_8_17710001 chr2R_17710001 RAL-208 786 chr2R 17764424 17764450 chr2R 17764527 17764553 13 103 0.5 4.5 2.5 3.7 129 chr2R 17764424 3` UTR CG5009 + chr2R 17764488 3` UTR CG5009 + chr2R 17764553 intergenic CG5009 +,OstDelta - chr2R_13_17760001 chr2R_17760001 RAL-208 787 chr2R 17784025 17784056 chr2R 17784266 17784297 pogo 10 241 5.5 3.5 4.5 1.8 272 chr2R 17784025 intergenic mir-31a - chr2R 17784161 intergenic mir-31a - chr2R 17784297 intergenic mir-31a - chr2R_10_17780001 chr2R_17780001 RAL-208 788 chr2R 17849809 17849831 chr2R 17849966 17849988 14 157 1.0 4.5 2.8 3.7 179 chr2R 17849809 intron olf186-F + chr2R 17849898 intron olf186-F + chr2R 17849988 intron olf186-F + chr2R_14_17845001 chr2R_17845001 RAL-208 789 chr2R 17982928 17982953 chr2R 17983011 17983038 13 85 2.5 3.0 2.8 3.4 110 chr2R 17982928 intron dpr13 - chr2R 17982983 intron dpr13 - chr2R 17983038 intron dpr13 - chr2R_13_17980001 chr2R_17980001 RAL-208 790 chr2R 18035415 18035432 chr2R 18035491 18035508 6 76 4.0 5.5 4.8 1.0 93 chr2R 18035415 intergenic not near genes chr2R 18035462 intergenic not near genes chr2R 18035508 intergenic not near genes chr2R_6_18035001 chr2R_18035001 RAL-208 791 chr2R 18045669 18045700 chr2R 18046021 18046052 jockey 12 352 3.5 2.0 2.8 3.2 383 chr2R 18045669 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046052 intergenic CG5767 - chr2R_12_18045001 chr2R_18045001 RAL-208 792 chr2R 18111689 18111716 chr2R 18115557 18115584 F-element 11 3868 5.0 6.0 5.5 1.7 3895 chr2R 18111689 intergenic not near genes chr2R 18113636 intergenic not near genes chr2R 18115584 intergenic not near genes chr2R_11_18110001 chr2R_18110001 RAL-208 793 chr2R 18142918 18142919 chr2R 18143157 18143158 5 239 16.5 2.0 9.2 0.5 240 chr2R 18142918 intron,5` UTR pAbp +,snoRNA:Psi18S-1347a + chr2R 18143038 intron,5` UTR pAbp +,snoRNA:Psi18S-1347b + chr2R 18143158 intron pAbp + chr2R_5_18140001 chr2R_18140001 RAL-208 794 chr2R 18195114 18195131 chr2R 18195479 18195496 11 364 4.5 5.0 4.8 1.9 382 chr2R 18195114 intergenic not near genes chr2R 18195305 intergenic not near genes chr2R 18195496 intergenic not near genes chr2R_11_18195001 chr2R_18195001 RAL-208 795 chr2R 18207265 18207290 chr2R 18207387 18207411 7 121 1.0 1.5 1.2 3.2 146 chr2R 18207265 intergenic CG30114 + chr2R 18207338 intergenic CG30114 + chr2R 18207411 intergenic CG30114 + chr2R_7_18205001 chr2R_18205001 RAL-208 796 chr2R 18289449 18289459 chr2R 18289551 18289561 6 102 3.0 2.0 2.5 1.7 112 chr2R 18289449 intron,intron sbb -,CG14502 + chr2R 18289505 intron,intron sbb -,CG14502 + chr2R 18289561 exon,intron sbb -,CG14502 + chr2R_6_18285001 chr2R_18285001 RAL-208 797 chr2R 18358388 18358420 chr2R 18372600 18372632 roo 10 14212 5.5 4.0 4.8 1.7 14244 chr2R 18358388 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372632 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-208 798 chr2R 18376728 18376761 chr2R 18376818 18376851 11 90 0.5 7.0 3.8 2.3 123 chr2R 18376728 intergenic not near genes chr2R 18376790 intergenic not near genes chr2R 18376851 intergenic not near genes chr2R_11_18375001 chr2R_18375001 RAL-208 799 chr2R 18390874 18390897 chr2R 18390959 18390984 10 86 2.0 3.0 2.5 2.9 110 chr2R 18390874 intergenic CG15068 - chr2R 18390929 intergenic CG15068 - chr2R 18390984 intergenic CG15068 - chr2R_10_18390001 chr2R_18390001 RAL-208 800 chr2R 18391973 18391990 chr2R 18392054 18392071 8 81 5.5 0.5 3.0 2.0 98 chr2R 18391973 intergenic not near genes chr2R 18392022 intergenic not near genes chr2R 18392071 intergenic not near genes chr2R_8_18390001 chr2R_18390001 RAL-208 801 chr2R 18408286 18408315 chr2R 18408403 18408436 7 120 2.0 2.5 2.2 2.2 150 chr2R 18408286 exon GstE8 + chr2R 18408361 exon GstE8 + chr2R 18408436 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-208 802 chr2R 18485205 18485237 chr2R 18485295 18485327 9 90 1.5 6.0 3.8 1.9 122 chr2R 18485205 intron CG30116 - chr2R 18485266 intron CG30116 - chr2R 18485327 intron CG30116 - chr2R_9_18485001 chr2R_18485001 RAL-208 803 chr2R 18526591 18526614 chr2R 18526673 18526696 20 82 6.5 2.5 4.5 3.6 105 chr2R 18526591 intergenic CG43066 + chr2R 18526644 intergenic CG43066 + chr2R 18526696 intergenic CG43066 + chr2R_20_18525001 chr2R_18525001 RAL-208 804 chr2R 18528193 18528207 chr2R 18528278 18528292 5 85 3.0 5.0 4.0 1.0 99 chr2R 18528193 intron CG10924 + chr2R 18528242 intron CG10924 + chr2R 18528292 intron CG10924 + chr2R_5_18525001 chr2R_18525001 RAL-208 805 chr2R 18550576 18550610 chr2R 18550665 18550699 16 88 2.5 2.5 2.5 4.6 123 chr2R 18550576 intergenic not near genes chr2R 18550638 intergenic not near genes chr2R 18550699 intergenic not near genes chr2R_16_18550001 chr2R_18550001 RAL-208 806 chr2R 18571743 18571768 chr2R 18571837 18571858 10 93 4.0 3.5 3.8 2.1 115 chr2R 18571743 intron GEFmeso - chr2R 18571800 intron GEFmeso - chr2R 18571858 intron GEFmeso - chr2R_10_18570001 chr2R_18570001 RAL-208 807 chr2R 18575805 18575831 chr2R 18581993 18582019 3S18 10 6187 0.5 4.0 2.2 3.1 6214 chr2R 18575805 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_10_18575001 chr2R_18575001 RAL-208 808 chr2R 18590873 18590901 chr2R 18600025 18600053 roo 17 9151 0.5 2.5 1.5 6.8 9180 chr2R 18590873 intron GEFmeso - chr2R 18595463 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_17_18595001 chr2R_18595001 RAL-208 809 chr2R 18692904 18692916 chr2R 18692991 18693003 6 86 4.0 2.0 3.0 1.5 99 chr2R 18692904 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693003 intron Sik3 + chr2R_6_18690001 chr2R_18690001 RAL-208 810 chr2R 18716704 18716737 chr2R 18716792 18716825 8 88 5.5 1.0 3.2 1.9 121 chr2R 18716704 intergenic not near genes chr2R 18716764 intergenic not near genes chr2R 18716825 intergenic not near genes chr2R_8_18715001 chr2R_18715001 RAL-208 811 chr2R 18835774 18835801 chr2R 18835856 18835882 8 82 1.5 0.0 0.8 4.4 108 chr2R 18835774 intron CG15083 + chr2R 18835828 intron CG15083 + chr2R 18835882 intron CG15083 + chr2R_8_18835001 chr2R_18835001 RAL-208 812 chr2R 18926508 18926524 chr2R 18926595 18926611 10 87 2.5 2.0 2.2 3.1 103 chr2R 18926508 intron sano + chr2R 18926560 intron sano + chr2R 18926611 intron sano + chr2R_10_18925001 chr2R_18925001 RAL-208 813 chr2R 18930453 18930485 chr2R 18930545 18930578 14 93 4.0 3.0 3.5 3.1 125 chr2R 18930453 intron sano + chr2R 18930516 intron sano + chr2R 18930578 intron sano + chr2R_14_18930001 chr2R_18930001 RAL-208 814 chr2R 18992016 18992047 chr2R 18992157 18992187 9 141 4.0 1.5 2.8 2.4 171 chr2R 18992016 intron tn + chr2R 18992102 intron tn + chr2R 18992187 intron tn + chr2R_9_18990001 chr2R_18990001 RAL-208 815 chr2R 19012939 19012970 chr2R 19013033 19013062 19 93 1.5 2.5 2.0 6.3 123 chr2R 19012939 intergenic not near genes chr2R 19013000 intergenic not near genes chr2R 19013062 intergenic not near genes chr2R_19_19010001 chr2R_19010001 RAL-208 816 chr2R 19038883 19038920 chr2R 19039014 19039051 13 131 1.0 0.0 0.5 8.7 168 chr2R 19038883 intergenic not near genes chr2R 19038967 intergenic not near genes chr2R 19039051 intergenic not near genes chr2R_13_19035001 chr2R_19035001 RAL-208 817 chr2R 19040085 19040118 chr2R 19040302 19040335 12 217 1.0 5.5 3.2 2.9 250 chr2R 19040085 intergenic not near genes chr2R 19040210 intergenic not near genes chr2R 19040335 intergenic not near genes chr2R_12_19040001 chr2R_19040001 RAL-208 818 chr2R 19044413 19044443 chr2R 19044516 19044547 6 104 1.5 1.5 1.5 2.4 134 chr2R 19044413 intergenic not near genes chr2R 19044480 intergenic not near genes chr2R 19044547 intergenic not near genes chr2R_6_19040001 chr2R_19040001 RAL-208 819 chr2R 19168741 19168756 chr2R 19168822 19168835 10 80 2.5 2.5 2.5 2.9 94 chr2R 19168741 intron CG10737 + chr2R 19168788 intron CG10737 + chr2R 19168835 intron CG10737 + chr2R_10_19165001 chr2R_19165001 RAL-208 820 chr2R 19183346 19183361 chr2R 19183422 19183437 5 76 4.5 3.5 4.0 1.0 91 chr2R 19183346 intron hppy + chr2R 19183392 intron hppy + chr2R 19183437 intron hppy + chr2R_5_19180001 chr2R_19180001 RAL-208 821 chr2R 19297743 19297773 chr2R 19297820 19297851 11 78 3.0 4.0 3.5 2.4 108 chr2R 19297743 intron Tab2 + chr2R 19297797 intron Tab2 + chr2R 19297851 intron Tab2 + chr2R_11_19295001 chr2R_19295001 RAL-208 822 chr2R 19363192 19363203 chr2R 19363268 19363279 7 76 0.5 1.5 1.0 3.5 87 chr2R 19363192 intergenic CG10051 + chr2R 19363236 intergenic CG10051 + chr2R 19363279 intergenic CG10051 + chr2R_7_19360001 chr2R_19360001 RAL-208 823 chr2R 19522645 19522671 chr2R 19522724 19522750 6 79 1.0 2.5 1.8 2.1 105 chr2R 19522645 3` UTR sm - chr2R 19522698 3` UTR sm - chr2R 19522750 3` UTR sm - chr2R_6_19520001 chr2R_19520001 RAL-208 824 chr2R 19536815 19536849 chr2R 19536912 19536946 4 97 2.0 3.5 2.8 1.1 131 chr2R 19536815 intron sm - chr2R 19536880 intron sm - chr2R 19536946 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-208 825 chr2R 19588757 19588768 chr2R 19588835 19588846 6 78 3.5 6.5 5.0 1.0 89 chr2R 19588757 intron sm - chr2R 19588802 intron sm - chr2R 19588846 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-208 826 chr2R 19595906 19595929 chr2R 19596141 19596164 9 234 3.5 4.0 3.8 1.9 258 chr2R 19595906 intron,exon sm -,CG16716 + chr2R 19596035 intron,exon sm -,CG16716 + chr2R 19596164 intron,exon sm -,CG16716 + chr2R_9_19595001 chr2R_19595001 RAL-208 827 chr2R 19622199 19622217 chr2R 19622282 19622300 9 83 6.0 5.0 5.5 1.4 101 chr2R 19622199 intron sm - chr2R 19622250 intron sm - chr2R 19622300 intron sm - chr2R_9_19620001 chr2R_19620001 RAL-208 828 chr2R 19776592 19776613 chr2R 19779915 19779932 jockey 13 3323 6.0 6.5 6.2 1.8 3340 chr2R 19776592 intergenic not near genes chr2R 19778262 intergenic not near genes chr2R 19779932 intergenic not near genes chr2R_13_19775001 chr2R_19775001 RAL-208 829 chr2R 19909477 19909493 chr2R 19909553 19909570 9 78 6.0 5.5 5.8 1.3 93 chr2R 19909477 intergenic CR44573 - chr2R 19909524 intergenic CR44573 - chr2R 19909570 intergenic CR44573 - chr2R_9_19905001 chr2R_19905001 RAL-208 830 chr2R 19957428 19957460 chr2R 19962630 19962662 copia 8 5202 2.0 2.5 2.2 2.5 5234 chr2R 19957428 intergenic CG44623 + chr2R 19960045 intergenic not near genes chr2R 19962662 intergenic not near genes chr2R_8_19960001 chr2R_19960001 RAL-208 831 chr2R 20008181 20008207 chr2R 20008270 20008296 17 89 1.0 1.5 1.2 7.7 115 chr2R 20008181 intergenic not near genes chr2R 20008238 intergenic not near genes chr2R 20008296 intergenic not near genes chr2R_17_20005001 chr2R_20005001 RAL-208 832 chr2R 20069243 20069271 chr2R 20071873 20071901 opus 12 2630 3.0 2.5 2.8 3.2 2658 chr2R 20069243 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071901 intergenic not near genes chr2R_12_20070001 chr2R_20070001 RAL-208 833 chr2R 20080603 20080623 chr2R 20080680 20080699 7 76 0.0 5.5 2.8 1.8 96 chr2R 20080603 intergenic not near genes chr2R 20080651 intergenic not near genes chr2R 20080699 intergenic not near genes chr2R_7_20080001 chr2R_20080001 RAL-208 834 chr2R 20118872 20118896 chr2R 20118960 20118982 10 87 3.5 3.5 3.5 2.2 110 chr2R 20118872 intergenic not near genes chr2R 20118927 intergenic not near genes chr2R 20118982 intergenic not near genes chr2R_10_20115001 chr2R_20115001 RAL-208 835 chr2R 20219435 20219454 chr2R 20219519 20219539 8 84 4.0 7.0 5.5 1.2 104 chr2R 20219435 intergenic not near genes chr2R 20219487 intergenic not near genes chr2R 20219539 intergenic not near genes chr2R_8_20215001 chr2R_20215001 RAL-208 836 chr2R 20326770 20326790 chr2R 20326846 20326863 9 76 6.0 4.5 5.2 1.5 93 chr2R 20326770 5` UTR MED8 - chr2R 20326816 intergenic MED8 -,CG8929 + chr2R 20326863 intergenic MED8 -,CG8929 + chr2R_9_20325001 chr2R_20325001 RAL-208 837 chr2R 20455470 20455501 chr2R 20455597 20455628 9 127 2.5 2.5 2.5 2.6 158 chr2R 20455470 intron CG12484 + chr2R 20455549 intron CG12484 + chr2R 20455628 intron CG12484 + chr2R_9_20455001 chr2R_20455001 RAL-208 838 chr2R 20541984 20542013 chr2R 20542062 20542091 16 78 3.5 4.0 3.8 3.3 107 chr2R 20541984 intergenic not near genes chr2R 20542038 intergenic not near genes chr2R 20542091 intergenic not near genes chr2R_16_20540001 chr2R_20540001 RAL-208 839 chr2R 20555898 20555913 chr2R 20559858 20559871 5 3959 23.5 27.0 25.2 0.2 3973 chr2R 20555898 intergenic not near genes chr2R 20557884 intron lms + chr2R 20559871 3` UTR,3` UTR lms +,Mgat1 - chr2R_5_20555001 chr2R_20555001 RAL-208 840 chr2R 20572575 20572584 chr2R 20572665 20572674 4 90 3.0 1.5 2.2 1.2 99 chr2R 20572575 intron qsm - chr2R 20572624 intron qsm - chr2R 20572674 intron qsm - chr2R_4_20570001 chr2R_20570001 RAL-208 841 chr2R 20755876 20755910 chr2R 20755975 20756010 16 100 2.5 6.0 4.2 3.1 134 chr2R 20755876 intergenic not near genes chr2R 20755943 intergenic not near genes chr2R 20756010 intergenic not near genes chr2R_16_20755001 chr2R_20755001 RAL-208 842 chr2R 20783311 20783331 chr2R 20788083 20788103 F-element 14 4772 3.5 3.5 3.5 3.1 4792 chr2R 20783311 intergenic not near genes chr2R 20785707 intergenic not near genes chr2R 20788103 intergenic CG43666 - chr2R_14_20785001 chr2R_20785001 RAL-208 843 chr2R 20812244 20812276 chr2R 20812323 20812356 18 80 6.5 4.5 5.5 2.8 112 chr2R 20812244 intergenic not near genes chr2R 20812300 intergenic not near genes chr2R 20812356 intergenic not near genes chr2R_18_20810001 chr2R_20810001 RAL-208 844 chr2R 20889538 20889573 chr2R 20889676 20889711 12 138 4.5 3.0 3.8 2.5 173 chr2R 20889538 intron otp - chr2R 20889624 intron otp - chr2R 20889711 intron otp - chr2R_12_20885001 chr2R_20885001 RAL-208 845 chr2R 20962905 20962936 chr2R 20963003 20963034 13 98 2.5 3.0 2.8 3.4 129 chr2R 20962905 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963034 intergenic not near genes chr2R_13_20960001 chr2R_20960001 RAL-208 846 chr2R 21057491 21057518 chr2R 21057570 21057603 8 81 1.0 0.5 0.8 4.4 112 chr2R 21057491 intergenic shg -,cpa + chr2R 21057547 intergenic cpa +,shg - chr2R 21057603 intergenic cpa +,shg - chr2R_8_21055001 chr2R_21055001 RAL-208 847 chr2R 21103541 21103552 chr2R 21103621 21103632 5 80 1.0 1.0 1.0 2.5 91 chr2R 21103541 intron ktub + chr2R 21103586 intron ktub + chr2R 21103632 intron ktub + chr2R_5_21100001 chr2R_21100001 RAL-208 848 chr2R 21110803 21110822 chr2R 21110896 21110915 5 93 1.5 3.5 2.5 1.4 112 chr2R 21110803 intron ktub + chr2R 21110859 intron ktub + chr2R 21110915 intron ktub + chr2R_5_21110001 chr2R_21110001 RAL-208 849 chr2R 21141120 21141149 chr2R 21141216 21141245 11 96 0.5 3.0 1.8 3.9 125 chr2R 21141120 intron Magi - chr2R 21141182 intron Magi - chr2R 21141245 intron Magi - chr2R_11_21140001 chr2R_21140001 RAL-208 850 chr2R 21157746 21157769 chr2R 21157827 21157850 13 81 5.5 0.5 3.0 3.2 104 chr2R 21157746 intron CG30389 - chr2R 21157798 intron CG30389 - chr2R 21157850 intron CG30389 - chr2R_13_21155001 chr2R_21155001 RAL-208 851 chr2R 21201409 21201435 chr2R 21201553 21201578 5 143 2.5 3.5 3.0 1.2 169 chr2R 21201409 intron,intron CG44245 +,Glycogenin + chr2R 21201494 intron,intron CG44245 +,Glycogenin + chr2R 21201578 intron,intron CG44245 +,Glycogenin + chr2R_5_21200001 chr2R_21200001 RAL-208 852 chr2R 21442683 21442708 chr2R 21442765 21442791 15 84 5.0 1.0 3.0 3.8 108 chr2R 21442683 intron Sdc - chr2R 21442737 intron Sdc - chr2R 21442791 intron Sdc - chr2R_15_21440001 chr2R_21440001 RAL-208 853 chr2R 21660885 21660909 chr2R 21660978 21661002 11 93 4.0 5.5 4.8 1.9 117 chr2R 21660885 intergenic pirk - chr2R 21660944 intergenic pirk - chr2R 21661002 3` UTR pirk - chr2R_11_21660001 chr2R_21660001 RAL-208 854 chr2R 21700154 21700186 chr2R 21700239 21700271 15 85 1.5 3.5 2.5 4.3 117 chr2R 21700154 intron HmgZ - chr2R 21700212 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_15_21700001 chr2R_21700001 RAL-208 855 chr2R 21738275 21738309 chr2R 21747435 21747467 roo 9 9160 7.5 2.5 5.0 1.5 9192 chr2R 21738275 intergenic not near genes chr2R 21742871 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_9_21740001 chr2R_21740001 RAL-208 856 chr2R 21753086 21753117 chr2R 21753571 21753602 roo 8 485 2.5 2.5 2.5 2.3 516 chr2R 21753086 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753602 intergenic not near genes chr2R_8_21750001 chr2R_21750001 RAL-208 857 chr2R 21774759 21774760 chr2R 22652306 22652307 5 877547 12.5 4.0 8.2 0.5 877548 chr2R 21774759 3` UTR CG4021 + chr2R 22213533 intron ari-2 + chr2R 22652307 3` UTR nsr + chr2R_5_22210001 chr2R_22210001 RAL-208 858 chr2R 21809525 21809553 chr2R 21817765 21817793 roo 15 8240 4.0 4.0 4.0 3.0 8268 chr2R 21809525 intergenic not near genes chr2R 21813659 intergenic not near genes chr2R 21817793 intergenic not near genes chr2R_15_21810001 chr2R_21810001 RAL-208 859 chr2R 21857347 21857368 chr2R 21857438 21857459 6 90 6.0 3.0 4.5 1.1 112 chr2R 21857347 intergenic not near genes chr2R 21857403 intergenic not near genes chr2R 21857459 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-208 860 chr2R 21859958 21859967 chr2R 21860036 21860046 9 78 2.5 9.5 6.0 1.3 88 chr2R 21859958 intergenic not near genes chr2R 21860002 intergenic not near genes chr2R 21860046 intergenic not near genes chr2R_9_21860001 chr2R_21860001 RAL-208 861 chr2R 21906280 21906302 chr2R 21906381 21906403 9 101 3.0 2.0 2.5 2.6 123 chr2R 21906280 intron Fili + chr2R 21906342 intron Fili + chr2R 21906403 intron Fili + chr2R_9_21905001 chr2R_21905001 RAL-208 862 chr2R 21946768 21946799 chr2R 21946863 21946895 13 96 3.5 3.0 3.2 3.1 127 chr2R 21946768 intergenic not near genes chr2R 21946832 intergenic not near genes chr2R 21946895 intergenic not near genes chr2R_13_21945001 chr2R_21945001 RAL-208 863 chr2R 21963202 21963217 chr2R 21963287 21963302 10 85 3.5 0.0 1.8 3.6 100 chr2R 21963202 intergenic not near genes chr2R 21963252 intergenic not near genes chr2R 21963302 intergenic not near genes chr2R_10_21960001 chr2R_21960001 RAL-208 864 chr2R 21993376 21993399 chr2R 21993467 21993490 7 91 1.5 2.0 1.8 2.5 114 chr2R 21993376 intron CG34370 - chr2R 21993433 intron CG34370 - chr2R 21993490 intron CG34370 - chr2R_7_21990001 chr2R_21990001 RAL-208 865 chr2R 22003088 22003122 chr2R 22003174 22003208 10 85 4.5 3.0 3.8 2.1 120 chr2R 22003088 intron CG34370 - chr2R 22003148 intron CG34370 - chr2R 22003208 intron CG34370 - chr2R_10_22000001 chr2R_22000001 RAL-208 866 chr2R 22035541 22035569 chr2R 22035628 22035656 18 87 1.0 3.5 2.2 5.6 115 chr2R 22035541 intron,3` UTR CG34370 -,CG9308 + chr2R 22035598 intron,3` UTR CG34370 -,CG9308 + chr2R 22035656 intron,3` UTR CG34370 -,CG9308 + chr2R_18_22035001 chr2R_22035001 RAL-208 867 chr2R 22040155 22040186 chr2R 22040236 22040263 13 80 1.5 3.5 2.5 3.7 108 chr2R 22040155 intergenic not near genes chr2R 22040209 intergenic not near genes chr2R 22040263 intergenic not near genes chr2R_13_22040001 chr2R_22040001 RAL-208 868 chr2R 22072682 22072713 chr2R 22072767 22072798 13 85 2.5 3.0 2.8 3.4 116 chr2R 22072682 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_13_22070001 chr2R_22070001 RAL-208 869 chr2R 22095962 22095990 chr2R 22096045 22096073 11 83 5.5 4.5 5.0 1.8 111 chr2R 22095962 intron CG11073 - chr2R 22096018 intron CG11073 - chr2R 22096073 intron CG11073 - chr2R_11_22095001 chr2R_22095001 RAL-208 870 chr2R 22124306 22124336 chr2R 22124395 22124425 14 89 4.0 2.0 3.0 3.5 119 chr2R 22124306 3` UTR mei-S332 + chr2R 22124366 3` UTR mei-S332 + chr2R 22124425 intergenic mei-S332 +,GM130 - chr2R_14_22120001 chr2R_22120001 RAL-208 871 chr2R 22185691 22185709 chr2R 22185790 22185808 8 98 0.5 1.0 0.8 4.4 117 chr2R 22185691 3` UTR MED16 + chr2R 22185750 3` UTR MED16 + chr2R 22185808 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-208 872 chr2R 22292075 22292209 chr2R 22292162 22292398 10 179 3.0 11.5 7.2 1.2 323 chr2R 22292075 5` UTR CR43422 + chr2R 22292236 5` UTR CR43422 + chr2R 22292398 intergenic CR43422 + chr2R_10_22290001 chr2R_22290001 RAL-208 873 chr2R 22349690 22349724 chr2R 22351473 22351508 jockey 15 1784 2.5 0.5 1.5 6.0 1818 chr2R 22349690 intron Liprin-gamma - chr2R 22350599 intron Liprin-gamma - chr2R 22351508 intron Liprin-gamma - chr2R_15_22350001 chr2R_22350001 RAL-208 874 chr2R 22360381 22360395 chr2R 22360814 22360828 jockey 8 432 2.0 4.5 3.2 1.9 447 chr2R 22360381 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360828 intron Liprin-gamma - chr2R_8_22360001 chr2R_22360001 RAL-208 875 chr2R 22363684 22363713 chr2R 22363760 22363789 10 75 7.5 3.0 5.2 1.6 105 chr2R 22363684 intron Liprin-gamma - chr2R 22363736 intron Liprin-gamma - chr2R 22363789 intron Liprin-gamma - chr2R_10_22360001 chr2R_22360001 RAL-208 876 chr2R 22380365 22380390 chr2R 22380456 22380481 4 91 4.5 0.0 2.2 1.2 116 chr2R 22380365 intron wrapper + chr2R 22380423 intron wrapper + chr2R 22380481 intron wrapper + chr2R_4_22380001 chr2R_22380001 RAL-208 877 chr2R 22505968 22505981 chr2R 22506067 22506080 4 99 4.0 0.0 2.0 1.3 112 chr2R 22505968 intron px - chr2R 22506024 intron px - chr2R 22506080 intron px - chr2R_4_22505001 chr2R_22505001 RAL-208 878 chr2R 22525761 22525786 chr2R 22529320 22529345 jockey 17 3559 4.0 3.0 3.5 3.8 3584 chr2R 22525761 intron px - chr2R 22527553 intron px - chr2R 22529345 intron px - chr2R_17_22525001 chr2R_22525001 RAL-208 879 chr2R 22541859 22541882 chr2R 22541959 22541982 13 100 4.0 1.0 2.5 3.7 123 chr2R 22541859 intron px - chr2R 22541920 intron px - chr2R 22541982 intron px - chr2R_13_22540001 chr2R_22540001 RAL-208 880 chr2R 22545622 22545646 chr2R 22545701 22545725 9 79 3.5 4.5 4.0 1.8 103 chr2R 22545622 intron px - chr2R 22545674 intron px - chr2R 22545725 intron px - chr2R_9_22545001 chr2R_22545001 RAL-208 881 chr2R 22575660 22575680 chr2R 22575739 22575758 11 78 6.0 2.5 4.2 2.1 98 chr2R 22575660 intron dnr1 - chr2R 22575709 intron dnr1 - chr2R 22575758 intron dnr1 - chr2R_11_22575001 chr2R_22575001 RAL-208 882 chr2R 22597525 22597545 chr2R 22597615 22597635 10 90 3.0 3.5 3.2 2.4 110 chr2R 22597525 5` UTR CG4269 + chr2R 22597580 5` UTR CG4269 + chr2R 22597635 5` UTR CG4269 + chr2R_10_22595001 chr2R_22595001 RAL-208 883 chr2R 22774964 22774999 chr2R 22775378 22775418 jockey 11 418 0.5 1.5 1.0 5.5 454 chr2R 22774964 intron CG42260 - chr2R 22775191 intron CG42260 - chr2R 22775418 intron CG42260 - chr2R_11_22775001 chr2R_22775001 RAL-208 884 chr2R 22941822 22941852 chr2R 22941901 22941931 7 79 0.0 5.0 2.5 2.0 109 chr2R 22941822 intergenic CG42694 + chr2R 22941876 5` UTR CG42694 + chr2R 22941931 5` UTR CG42694 + chr2R_7_22940001 chr2R_22940001 RAL-208 885 chr2R 22951832 22951865 chr2R 22951918 22951951 12 86 2.0 3.0 2.5 3.4 119 chr2R 22951832 3` UTR CR32835 - chr2R 22951892 3` UTR CR32835 - chr2R 22951951 intron CR32835 - chr2R_12_22950001 chr2R_22950001 RAL-208 886 chr2R 23029614 23029637 chr2R 23029690 23029713 9 76 2.0 4.5 3.2 2.1 99 chr2R 23029614 intron,intron twi +,CG42741 - chr2R 23029664 intron,intron twi +,CG42741 - chr2R 23029713 intron,intron twi +,CG42741 - chr2R_9_23025001 chr2R_23025001 RAL-208 887 chr2R 23052649 23052689 chr2R 23052725 23052765 15 76 1.5 5.0 3.2 3.6 116 chr2R 23052649 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_15_23050001 chr2R_23050001 RAL-208 888 chr2R 23074849 23074871 chr2R 23075038 23075060 4 189 7.5 15.0 11.2 0.3 211 chr2R 23074849 5` UTR CG3085 + chr2R 23074954 intron CG3085 + chr2R 23075060 intron CG3085 + chr2R_4_23070001 chr2R_23070001 RAL-208 889 chr2R 23158424 23158424 chr2R 23158563 23158565 4 140 5.5 9.5 7.5 0.5 141 chr2R 23158424 intron CG9899 + chr2R 23158494 intron CG9899 + chr2R 23158565 intron CG9899 + chr2R_4_23155001 chr2R_23155001 RAL-208 890 chr2R 23175042 23175064 chr2R 23175119 23175141 9 77 3.5 6.5 5.0 1.5 99 chr2R 23175042 intron CG34371 - chr2R 23175092 intron CG34371 - chr2R 23175141 intron CG34371 - chr2R_9_23175001 chr2R_23175001 RAL-208 891 chr2R 23188564 23188586 chr2R 23188642 23188664 8 78 2.5 6.0 4.2 1.5 100 chr2R 23188564 intron CG34371 - chr2R 23188614 intron CG34371 - chr2R 23188664 intron CG34371 - chr2R_8_23185001 chr2R_23185001 RAL-208 892 chr2R 23190017 23190044 chr2R 23190097 23190122 6 80 9.0 0.0 4.5 1.1 105 chr2R 23190017 intron CG34371 - chr2R 23190070 intron CG34371 - chr2R 23190122 intron CG34371 - chr2R_6_23190001 chr2R_23190001 RAL-208 893 chr2R 23219013 23219023 chr2R 23219250 23219262 6 238 4.0 0.0 2.0 2.0 249 chr2R 23219013 intergenic not near genes chr2R 23219138 intergenic not near genes chr2R 23219262 intergenic not near genes chr2R_6_23215001 chr2R_23215001 RAL-208 894 chr2R 23220366 23220400 chr2R 23220521 23220555 5 155 3.0 3.0 3.0 1.2 189 chr2R 23220366 intergenic not near genes chr2R 23220460 intergenic not near genes chr2R 23220555 intergenic not near genes chr2R_5_23220001 chr2R_23220001 RAL-208 895 chr2R 23402609 23402639 chr2R 23407685 23407715 flea 10 5076 4.0 2.0 3.0 2.5 5106 chr2R 23402609 intergenic CG3520 - chr2R 23405162 intergenic not near genes chr2R 23407715 intergenic not near genes chr2R_10_23405001 chr2R_23405001 RAL-208 896 chr2R 23437229 23437243 chr2R 23437306 23437319 6 76 2.0 0.0 1.0 3.0 90 chr2R 23437229 intergenic not near genes chr2R 23437274 intergenic not near genes chr2R 23437319 intergenic not near genes chr2R_6_23435001 chr2R_23435001 RAL-208 897 chr2R 23458842 23458874 chr2R 23458952 23458985 8 111 2.0 3.0 2.5 2.3 143 chr2R 23458842 intron CG43795 + chr2R 23458914 intron CG43795 + chr2R 23458985 intron CG43795 + chr2R_8_23455001 chr2R_23455001 RAL-208 898 chr2R 23463390 23463419 chr2R 23463469 23463498 12 79 2.0 6.0 4.0 2.4 108 chr2R 23463390 intron CG43795 + chr2R 23463444 intron CG43795 + chr2R 23463498 intron CG43795 + chr2R_12_23460001 chr2R_23460001 RAL-208 899 chr2R 23467577 23467586 chr2R 23467705 23467715 5 129 5.0 5.5 5.2 0.8 138 chr2R 23467577 intron CG43795 + chr2R 23467646 intron CG43795 + chr2R 23467715 intron CG43795 + chr2R_5_23465001 chr2R_23465001 RAL-208 900 chr2R 23487452 23487473 chr2R 23487533 23487554 10 82 2.5 3.0 2.8 2.6 102 chr2R 23487452 intron CG43795 + chr2R 23487503 intron CG43795 + chr2R 23487554 intron CG43795 + chr2R_10_23485001 chr2R_23485001 RAL-208 901 chr2R 23508921 23508945 chr2R 23509038 23509062 10 117 2.5 2.0 2.2 3.1 141 chr2R 23508921 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509062 intergenic not near genes chr2R_10_23505001 chr2R_23505001 RAL-208 902 chr2R 23520965 23520983 chr2R 23521044 23521065 9 81 3.5 10.0 6.8 1.2 100 chr2R 23520965 exon RabX1 - chr2R 23521015 intron RabX1 - chr2R 23521065 intron RabX1 - chr2R_9_23520001 chr2R_23520001 RAL-208 903 chr2R 23529574 23529606 chr2R 23537150 23537182 412 7 7575 2.0 2.0 2.0 2.3 7608 chr2R 23529574 intron bw - chr2R 23533378 intron bw - chr2R 23537182 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-208 904 chr2R 23554930 23554956 chr2R 23555012 23555040 17 84 5.0 4.5 4.8 2.9 110 chr2R 23554930 intergenic Rrp4 -,pita - chr2R 23554985 intergenic Rrp4 -,pita - chr2R 23555040 3` UTR Rrp4 - chr2R_17_23550001 chr2R_23550001 RAL-208 905 chr2R 23589184 23589194 chr2R 23589261 23589271 6 77 4.0 5.0 4.5 1.1 87 chr2R 23589184 intron apt + chr2R 23589228 intron apt + chr2R 23589271 intron apt + chr2R_6_23585001 chr2R_23585001 RAL-208 906 chr2R 23607038 23607192 chr2R 23607119 23607285 10 86 2.0 4.0 3.0 2.5 247 chr2R 23607038 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607285 intron CG17664 - chr2R_10_23605001 chr2R_23605001 RAL-208 907 chr2R 23663854 23663876 chr2R 23664151 23664175 10 298 2.5 5.5 4.0 2.0 321 chr2R 23663854 intron Pde8 + chr2R 23664014 intron Pde8 + chr2R 23664175 intron Pde8 + chr2R_10_23660001 chr2R_23660001 RAL-208 908 chr2R 23726224 23726247 chr2R 23726314 23726337 12 90 3.0 4.5 3.8 2.5 113 chr2R 23726224 intron Sesn + chr2R 23726280 intron Sesn + chr2R 23726337 intron Sesn + chr2R_12_23725001 chr2R_23725001 RAL-208 909 chr2R 23914321 23914332 chr2R 23921945 23921955 412 5 7623 2.0 2.5 2.2 1.6 7634 chr2R 23914321 exon kcc + chr2R 23918138 intron kcc + chr2R 23921955 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-208 910 chr2R 23986512 23986545 chr2R 23986592 23986625 16 80 1.5 3.0 2.2 5.0 113 chr2R 23986512 intron Phm - chr2R 23986568 intron Phm - chr2R 23986625 intron,5` UTR Phm -,CG30178 + chr2R_16_23985001 chr2R_23985001 RAL-208 911 chr2R 24031390 24031409 chr2R 24031471 24031493 12 84 4.5 4.5 4.5 2.2 103 chr2R 24031390 5` UTR CG30172 - chr2R 24031442 intergenic CG30172 -,Chi - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-208 912 chr2R 24077931 24077957 chr2R 24078007 24078033 12 76 3.5 5.0 4.2 2.3 102 chr2R 24077931 3` UTR Mlp60A + chr2R 24077982 3` UTR Mlp60A + chr2R 24078033 3` UTR Mlp60A + chr2R_12_24075001 chr2R_24075001 RAL-208 913 chr2R 24147066 24147096 chr2R 24154644 24154674 412 13 7578 3.0 4.0 3.5 2.9 7608 chr2R 24147066 intron Dat + chr2R 24150870 intron Dat + chr2R 24154674 intron Dat + chr2R_13_24150001 chr2R_24150001 RAL-208 914 chr2R 24177236 24177253 chr2R 24184721 24184738 412 6 7485 4.0 7.0 5.5 0.9 7502 chr2R 24177236 3` UTR Nop60B + chr2R 24180987 intron Nop60B + chr2R 24184738 3` UTR Nop60B + chr2R_6_24180001 chr2R_24180001 RAL-208 915 chr2R 24353436 24353459 chr2R 24361798 24361819 roo 6 8362 0.5 5.5 3.0 1.5 8383 chr2R 24353436 intron,intron bs +,CR44811 - chr2R 24357628 intron,intron bs +,CR44811 - chr2R 24361819 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-208 916 chr2R 24385641 24385672 chr2R 24385748 24385779 6 106 4.0 5.0 4.5 1.1 138 chr2R 24385641 intron mAChR-A - chr2R 24385710 intron mAChR-A - chr2R 24385779 intron mAChR-A - chr2R_6_24385001 chr2R_24385001 RAL-208 917 chr2R 24483526 24483553 chr2R 24483841 24483868 4 315 3.0 1.5 2.2 1.2 342 chr2R 24483526 intron CG13579 + chr2R 24483697 intron CG13579 + chr2R 24483868 intron CG13579 + chr2R_4_24480001 chr2R_24480001 RAL-208 918 chr2R 24590115 24590142 chr2R 24590207 24590234 14 91 3.0 3.0 3.0 3.5 119 chr2R 24590115 intron pio + chr2R 24590174 intron pio + chr2R 24590234 intron pio + chr2R_14_24590001 chr2R_24590001 RAL-208 919 chr2R 24636906 24636930 chr2R 24636991 24637016 16 86 3.0 0.0 1.5 6.4 110 chr2R 24636906 intron CG13594 - chr2R 24636961 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_16_24635001 chr2R_24635001 RAL-208 920 chr2R 24647591 24647618 chr2R 24655148 24655175 412 14 7557 1.5 3.0 2.2 4.4 7584 chr2R 24647591 intergenic not near genes chr2R 24651383 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_14_24650001 chr2R_24650001 RAL-208 921 chr2R 24722368 24722396 chr2R 24722450 24722478 21 82 4.5 4.0 4.2 4.0 110 chr2R 24722368 intron Mid1 - chr2R 24722423 intron Mid1 - chr2R 24722478 intron Mid1 - chr2R_21_24720001 chr2R_24720001 RAL-208 922 chr2R 24727885 24727916 chr2R 24735393 24735424 mdg1 9 7508 0.0 4.0 2.0 3.0 7539 chr2R 24727885 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-208 923 chr2R 24737153 24737172 chr2R 24737273 24737292 10 120 2.0 3.0 2.5 2.9 139 chr2R 24737153 intergenic Mid1 - chr2R 24737222 intergenic not near genes chr2R 24737292 intergenic not near genes chr2R_10_24735001 chr2R_24735001 RAL-208 924 chr2R 24763612 24763637 chr2R 24765588 24765613 G2 12 1976 1.5 2.5 2.0 4.0 2001 chr2R 24763612 exon CG3894 + chr2R 24764612 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-208 925 chr2R 24859842 24859871 chr2R 24859928 24859956 10 86 2.0 1.0 1.5 4.0 114 chr2R 24859842 5` UTR CR44829 + chr2R 24859899 5` UTR CR44829 + chr2R 24859956 5` UTR CR44829 + chr2R_10_24855001 chr2R_24855001 RAL-208 926 chr2R 24884050 24884076 chr2R 24884132 24884158 10 82 4.5 2.5 3.5 2.2 108 chr2R 24884050 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_10_24880001 chr2R_24880001 RAL-208 927 chr2R 24940813 24940822 chr2R 24940993 24941001 6 180 28.5 30.0 29.2 0.2 188 chr2R 24940813 3` UTR Tina-1 - chr2R 24940907 exon Tina-1 - chr2R 24941001 exon Tina-1 - chr2R_6_24940001 chr2R_24940001 RAL-208 928 chr2R 25009867 25009903 chr2R 25009981 25010017 10 114 1.0 2.0 1.5 4.0 150 chr2R 25009867 intron zip - chr2R 25009942 intron zip - chr2R 25010017 intron zip - chr2R_10_25005001 chr2R_25005001 RAL-208 929 chr2R 25061343 25061365 chr2R 25061424 25061448 11 82 1.5 4.0 2.8 2.9 105 chr2R 25061343 intergenic not near genes chr2R 25061396 intergenic not near genes chr2R 25061448 intergenic not near genes chr2R_11_25060001 chr2R_25060001 RAL-208 930 chr2R 25101275 25101307 chr2R 25101376 25101408 17 102 2.5 2.0 2.2 5.3 133 chr2R 25101275 intron lov - chr2R 25101342 intron lov - chr2R 25101408 intron lov - chr2R_17_25100001 chr2R_25100001 RAL-208 931 chr2R 25102528 25102554 chr2R 25102697 25102723 9 169 5.0 3.5 4.2 1.7 195 chr2R 25102528 intron lov - chr2R 25102626 intron lov - chr2R 25102723 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-208 932 chr2R 25104788 25104810 chr2R 25104912 25104935 8 124 2.5 5.5 4.0 1.6 147 chr2R 25104788 intron lov - chr2R 25104862 intron lov - chr2R 25104935 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-208 933 chr2R 25131012 25131042 chr2R 25131089 25131119 12 76 1.5 1.5 1.5 4.8 107 chr2R 25131012 intron lov - chr2R 25131066 intron lov - chr2R 25131119 intron lov - chr2R_12_25130001 chr2R_25130001 RAL-208 934 chr2R 25141648 25141683 chr2R 25159338 25159373 roo 21 17690 1.5 4.0 2.8 5.5 17725 chr2R 25141648 intergenic not near genes chr2R 25150510 intergenic not near genes chr2R 25159373 intergenic not near genes chr2R_21_25150001 chr2R_25150001 RAL-208 935 chr2R 25193341 25193356 chr2R 25193483 25193498 6 142 4.0 1.5 2.8 1.6 157 chr2R 25193341 intron CG9380 - chr2R 25193420 intron CG9380 - chr2R 25193498 intron CG9380 - chr2R_6_25190001 chr2R_25190001 RAL-208 936 chr2R 25238333 25238338 chr2R 25238439 25238444 5 106 4.0 4.5 4.2 1.0 111 chr2R 25238333 intron CG9380 - chr2R 25238388 intron CG9380 - chr2R 25238444 intron CG9380 - chr2R_5_25235001 chr2R_25235001 RAL-208 937 chr2R 25253447 25253476 chr2R 25253523 25253552 4 76 3.0 3.0 3.0 1.0 105 chr2R 25253447 intron,intron CG9380 -,CG30428 + chr2R 25253500 intron,intron CG9380 -,CG30428 + chr2R 25253552 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-208 938 chr3L 29587 29616 chr3L 29974 30003 10 387 1.5 3.0 2.2 3.1 416 chr3L 29587 intergenic not near genes chr3L 29795 intergenic not near genes chr3L 30003 intergenic not near genes chr3L_10_25001 chr3L_25001 RAL-208 939 chr3L 68980 68996 chr3L 69067 69083 8 87 3.0 2.0 2.5 2.3 103 chr3L 68980 3` UTR Lsp1gamma + chr3L 69032 intergenic Lsp1gamma +,CR44510 + chr3L 69083 intergenic CR44510 +,Lsp1gamma + chr3L_8_65001 chr3L_65001 RAL-208 940 chr3L 93794 93817 chr3L 93875 93893 7 80 4.5 6.0 5.2 1.1 99 chr3L 93794 intergenic not near genes chr3L 93844 intergenic not near genes chr3L 93893 intergenic not near genes chr3L_7_90001 chr3L_90001 RAL-208 941 chr3L 106001 106027 chr3L 106129 106156 15 128 1.5 1.5 1.5 6.0 155 chr3L 106001 intergenic not near genes chr3L 106078 intergenic not near genes chr3L 106156 intergenic not near genes chr3L_15_105001 chr3L_105001 RAL-208 942 chr3L 110211 110237 chr3L 119378 119404 roo 11 9167 2.0 3.0 2.5 3.1 9193 chr3L 110211 intergenic not near genes chr3L 114808 intergenic not near genes chr3L 119404 intergenic not near genes chr3L_11_110001 chr3L_110001 RAL-208 943 chr3L 402692 402717 chr3L 409745 409770 297 12 7053 7.5 5.0 6.2 1.7 7078 chr3L 402692 intergenic not near genes chr3L 406231 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_12_405001 chr3L_405001 RAL-208 944 chr3L 421049 421079 chr3L 421145 421175 14 96 3.0 2.5 2.8 3.7 126 chr3L 421049 intergenic not near genes chr3L 421112 intergenic not near genes chr3L 421175 intergenic not near genes chr3L_14_420001 chr3L_420001 RAL-208 945 chr3L 494588 494616 chr3L 494670 494698 9 81 6.0 0.0 3.0 2.2 110 chr3L 494588 intron klar - chr3L 494643 intron klar - chr3L 494698 intron klar - chr3L_9_490001 chr3L_490001 RAL-208 946 chr3L 524745 524774 chr3L 524828 524856 5 83 0.0 2.5 1.2 2.3 111 chr3L 524745 intron klar - chr3L 524800 intron klar - chr3L 524856 intron klar - chr3L_5_520001 chr3L_520001 RAL-208 947 chr3L 538027 538052 chr3L 538133 538158 17 106 2.5 3.0 2.8 4.5 131 chr3L 538027 intron klar - chr3L 538092 intron klar - chr3L 538158 intron klar - chr3L_17_535001 chr3L_535001 RAL-208 948 chr3L 642467 642500 chr3L 642558 642591 9 91 2.0 7.5 4.8 1.6 124 chr3L 642467 5` UTR CR43334 + chr3L 642529 5` UTR CR43334 + chr3L 642591 5` UTR CR43334 + chr3L_9_640001 chr3L_640001 RAL-208 949 chr3L 705249 705263 chr3L 705325 705339 6 76 2.0 4.5 3.2 1.4 90 chr3L 705249 intergenic CR44514 + chr3L 705294 intergenic CR44514 + chr3L 705339 5` UTR CR44514 + chr3L_6_705001 chr3L_705001 RAL-208 950 chr3L 705899 705917 chr3L 705995 706013 8 96 6.0 2.0 4.0 1.6 114 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705956 3` UTR CG13895 - chr3L 706013 3` UTR CG13895 - chr3L_8_705001 chr3L_705001 RAL-208 951 chr3L 832601 832635 chr3L 832681 832711 10 79 2.5 1.0 1.8 3.6 110 chr3L 832601 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832656 intron CG13900 - chr3L 832711 intron CG13900 - chr3L_10_830001 chr3L_830001 RAL-208 952 chr3L 857997 858031 chr3L 866478 866512 Tirant 10 8480 1.0 0.5 0.8 5.6 8515 chr3L 857997 intergenic not near genes chr3L 862254 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_10_860001 chr3L_860001 RAL-208 953 chr3L 875659 875693 chr3L 875746 875779 10 86 4.0 1.5 2.8 2.6 120 chr3L 875659 intron CG32479 + chr3L 875719 intron CG32479 + chr3L 875779 intron CG32479 + chr3L_10_875001 chr3L_875001 RAL-208 954 chr3L 899987 900017 chr3L 900071 900101 6 84 0.0 2.0 1.0 3.0 114 chr3L 899987 intergenic not near genes chr3L 900044 intergenic not near genes chr3L 900101 intergenic not near genes chr3L_6_900001 chr3L_900001 RAL-208 955 chr3L 901420 901449 chr3L 901504 901533 11 84 6.5 2.0 4.2 2.1 113 chr3L 901420 intergenic not near genes chr3L 901476 intergenic not near genes chr3L 901533 intergenic not near genes chr3L_11_900001 chr3L_900001 RAL-208 956 chr3L 925174 925210 chr3L 932600 932636 mdg1 13 7426 3.0 4.5 3.8 2.7 7462 chr3L 925174 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_13_925001 chr3L_925001 RAL-208 957 chr3L 936187 936218 chr3L 936266 936296 8 79 3.0 4.0 3.5 1.8 109 chr3L 936187 intron Glut1 + chr3L 936242 intron Glut1 + chr3L 936296 intron Glut1 + chr3L_8_935001 chr3L_935001 RAL-208 958 chr3L 939771 939798 chr3L 940892 940919 jockey 13 1121 6.5 4.5 5.5 2.0 1148 chr3L 939771 intron Glut1 + chr3L 940345 intron Glut1 + chr3L 940919 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-208 959 chr3L 949895 949923 chr3L 949980 950005 15 85 3.0 1.5 2.2 4.7 110 chr3L 949895 intron Glut1 + chr3L 949950 intron Glut1 + chr3L 950005 intron Glut1 + chr3L_15_945001 chr3L_945001 RAL-208 960 chr3L 1008508 1008528 chr3L 1008584 1008604 10 76 5.5 5.5 5.5 1.5 96 chr3L 1008508 intron trio - chr3L 1008556 intron trio - chr3L 1008604 intron trio - chr3L_10_1005001 chr3L_1005001 RAL-208 961 chr3L 1015032 1015048 chr3L 1015144 1015160 10 112 2.0 2.0 2.0 3.3 128 chr3L 1015032 intron trio - chr3L 1015096 intron trio - chr3L 1015160 intron trio - chr3L_10_1015001 chr3L_1015001 RAL-208 962 chr3L 1031580 1031601 chr3L 1031655 1031677 5 76 3.5 3.0 3.2 1.2 97 chr3L 1031580 intron trio - chr3L 1031628 intron trio - chr3L 1031677 intron trio - chr3L_5_1030001 chr3L_1030001 RAL-208 963 chr3L 1033330 1033335 chr3L 1033437 1033442 9 107 0.0 0.0 0.0 9.0 112 chr3L 1033330 intron trio - chr3L 1033386 intron trio - chr3L 1033442 intron trio - chr3L_9_1030001 chr3L_1030001 RAL-208 964 chr3L 1040548 1040573 chr3L 1040632 1040657 9 84 2.0 4.0 3.0 2.2 109 chr3L 1040548 intron bab1 - chr3L 1040602 intron bab1 - chr3L 1040657 intron bab1 - chr3L_9_1040001 chr3L_1040001 RAL-208 965 chr3L 1095019 1095049 chr3L 1095100 1095130 10 80 0.5 2.5 1.5 4.0 111 chr3L 1095019 intron bab1 - chr3L 1095074 intron bab1 - chr3L 1095130 intron bab1 - chr3L_10_1095001 chr3L_1095001 RAL-208 966 chr3L 1154130 1154163 chr3L 1163280 1163313 roo 10 9150 2.0 3.5 2.8 2.6 9183 chr3L 1154130 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163313 intron bab2 - chr3L_10_1155001 chr3L_1155001 RAL-208 967 chr3L 1219594 1219623 chr3L 1227327 1227356 412 11 7733 7.5 3.0 5.2 1.8 7762 chr3L 1219594 intron mwh + chr3L 1223475 intron mwh + chr3L 1227356 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-208 968 chr3L 1275118 1275128 chr3L 1275198 1275208 13 80 5.5 6.5 6.0 1.9 90 chr3L 1275118 intergenic not near genes chr3L 1275163 intergenic not near genes chr3L 1275208 intergenic not near genes chr3L_13_1275001 chr3L_1275001 RAL-208 969 chr3L 1310986 1311009 chr3L 1315849 1315869 5 4861 21.5 28.0 24.8 0.2 4883 chr3L 1310986 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315869 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-208 970 chr3L 1324653 1324655 chr3L 1324731 1324733 5 78 3.5 5.0 4.2 1.0 80 chr3L 1324653 intron Myo61F + chr3L 1324693 intron Myo61F + chr3L 1324733 intron Myo61F + chr3L_5_1320001 chr3L_1320001 RAL-208 971 chr3L 1347157 1347182 chr3L 1347242 1347267 10 84 5.0 2.5 3.8 2.1 110 chr3L 1347157 intron Ptp61F - chr3L 1347212 intron Ptp61F - chr3L 1347267 intron Ptp61F - chr3L_10_1345001 chr3L_1345001 RAL-208 972 chr3L 1374430 1374446 chr3L 1374507 1374521 9 77 7.0 6.0 6.5 1.2 91 chr3L 1374430 intron,intron Ptp61F -,ru + chr3L 1374476 intron,intron Ptp61F -,ru + chr3L 1374521 intron,intron Ptp61F -,ru + chr3L_9_1370001 chr3L_1370001 RAL-208 973 chr3L 1385176 1385204 chr3L 1385264 1385292 11 88 7.0 3.5 5.2 1.8 116 chr3L 1385176 intron,intron Ptp61F -,ru + chr3L 1385234 intron,intron Ptp61F -,ru + chr3L 1385292 intron,intron Ptp61F -,ru + chr3L_11_1385001 chr3L_1385001 RAL-208 974 chr3L 1415774 1415804 chr3L 1415856 1415886 11 82 6.5 4.0 5.2 1.8 112 chr3L 1415774 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415886 intron Ptp61F - chr3L_11_1415001 chr3L_1415001 RAL-208 975 chr3L 1506002 1506028 chr3L 1513599 1513625 17.6 16 7597 3.5 3.5 3.5 3.6 7623 chr3L 1506002 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_16_1505001 chr3L_1505001 RAL-208 976 chr3L 1610575 1610606 chr3L 1610670 1610701 9 95 2.0 5.5 3.8 1.9 126 chr3L 1610575 intron,intron CG18170 +,CG33791 + chr3L 1610638 intron,intron CG18170 +,CG33791 + chr3L 1610701 intron,intron,3` UTR CG18170 +,CG33791 +,CG12105 - chr3L_9_1610001 chr3L_1610001 RAL-208 977 chr3L 1615135 1615150 chr3L 1615294 1615309 7 159 4.0 3.0 3.5 1.6 174 chr3L 1615135 intron,intron,exon CG18170 +,CG33791 +,CG12105 - chr3L 1615222 intron,intron,exon CG18170 +,CG33791 +,CG12105 - chr3L 1615309 intron,intron,exon CG18170 +,CG33791 +,CG12105 - chr3L_7_1615001 chr3L_1615001 RAL-208 978 chr3L 1684020 1684040 chr3L 1684098 1684118 5 78 3.5 2.5 3.0 1.2 98 chr3L 1684020 intron CG7991 + chr3L 1684069 intron CG7991 + chr3L 1684118 intron CG7991 + chr3L_5_1680001 chr3L_1680001 RAL-208 979 chr3L 1688249 1688262 chr3L 1688377 1688391 6 128 4.5 3.0 3.8 1.2 142 chr3L 1688249 intron CG7991 + chr3L 1688320 intron CG7991 + chr3L 1688391 intron CG7991 + chr3L_6_1685001 chr3L_1685001 RAL-208 980 chr3L 1740853 1740885 chr3L 1741096 1741128 pogo 5 242 5.0 4.5 4.8 0.9 275 chr3L 1740853 intron Gk + chr3L 1740990 intron Gk + chr3L 1741128 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-208 981 chr3L 1821519 1821645 chr3L 1821597 1821726 20 79 5.5 4.5 5.0 3.3 207 chr3L 1821519 intron GV1 + chr3L 1821622 intron GV1 + chr3L 1821726 intron GV1 + chr3L_20_1820001 chr3L_1820001 RAL-208 982 chr3L 1885162 1885178 chr3L 1885242 1885258 10 80 0.0 4.5 2.2 3.1 96 chr3L 1885162 intergenic Aprt -,Tmhs + chr3L 1885210 intergenic Aprt -,Tmhs + chr3L 1885258 intergenic Aprt -,Tmhs + chr3L_10_1885001 chr3L_1885001 RAL-208 983 chr3L 1997222 1997250 chr3L 1997331 1997359 17 108 2.5 1.5 2.0 5.7 137 chr3L 1997222 intergenic not near genes chr3L 1997290 intergenic not near genes chr3L 1997359 intergenic not near genes chr3L_17_1995001 chr3L_1995001 RAL-208 984 chr3L 2007150 2007162 chr3L 2007235 2007247 7 85 3.5 3.0 3.2 1.7 97 chr3L 2007150 intergenic not near genes chr3L 2007198 intergenic not near genes chr3L 2007247 intergenic not near genes chr3L_7_2005001 chr3L_2005001 RAL-208 985 chr3L 2031620 2031632 chr3L 2031696 2031708 5 76 3.5 3.0 3.2 1.2 88 chr3L 2031620 intergenic not near genes chr3L 2031664 intergenic not near genes chr3L 2031708 intergenic not near genes chr3L_5_2030001 chr3L_2030001 RAL-208 986 chr3L 2034227 2034247 chr3L 2034355 2034374 4 128 2.5 0.5 1.5 1.6 147 chr3L 2034227 intergenic not near genes chr3L 2034300 intergenic not near genes chr3L 2034374 intergenic not near genes chr3L_4_2030001 chr3L_2030001 RAL-208 987 chr3L 2035107 2035119 chr3L 2035297 2035306 8 190 4.0 0.0 2.0 2.7 199 chr3L 2035107 intergenic not near genes chr3L 2035206 intergenic not near genes chr3L 2035306 intergenic not near genes chr3L_8_2035001 chr3L_2035001 RAL-208 988 chr3L 2172854 2172881 chr3L 2172950 2172977 6 96 1.0 1.5 1.2 2.7 123 chr3L 2172854 intergenic CG15820 - chr3L 2172916 intergenic CG15820 - chr3L 2172977 intergenic CG15820 - chr3L_6_2170001 chr3L_2170001 RAL-208 989 chr3L 2218473 2218503 chr3L 2218549 2218578 11 75 4.0 6.0 5.0 1.8 105 chr3L 2218473 intergenic not near genes chr3L 2218526 intergenic not near genes chr3L 2218578 intergenic not near genes chr3L_11_2215001 chr3L_2215001 RAL-208 990 chr3L 2279051 2279065 chr3L 2279196 2279212 5 146 0.0 6.0 3.0 1.2 161 chr3L 2279051 intergenic not near genes chr3L 2279132 intergenic not near genes chr3L 2279212 intergenic not near genes chr3L_5_2275001 chr3L_2275001 RAL-208 991 chr3L 2308002 2308036 chr3L 2308108 2308141 11 106 5.0 5.5 5.2 1.8 139 chr3L 2308002 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_11_2305001 chr3L_2305001 RAL-208 992 chr3L 2331585 2331608 chr3L 2331662 2331685 10 77 7.0 2.5 4.8 1.7 100 chr3L 2331585 intron MsR1 + chr3L 2331635 intron MsR1 + chr3L 2331685 intron MsR1 + chr3L_10_2330001 chr3L_2330001 RAL-208 993 chr3L 2533646 2533680 chr3L 2533728 2533758 12 81 5.0 2.5 3.8 2.5 112 chr3L 2533646 intron Spn - chr3L 2533702 intron Spn - chr3L 2533758 intron Spn - chr3L_12_2530001 chr3L_2530001 RAL-208 994 chr3L 2561527 2561561 chr3L 2561604 2561638 13 77 1.5 3.5 2.5 3.7 111 chr3L 2561527 intron msn - chr3L 2561582 intron msn - chr3L 2561638 intron msn - chr3L_13_2560001 chr3L_2560001 RAL-208 995 chr3L 2683943 2683978 chr3L 2684019 2684054 18 76 4.5 4.5 4.5 3.3 111 chr3L 2683943 intron Fife - chr3L 2683998 intron Fife - chr3L 2684054 intron Fife - chr3L_18_2680001 chr3L_2680001 RAL-208 996 chr3L 2719537 2719560 chr3L 2719639 2719662 13 102 5.5 2.5 4.0 2.6 125 chr3L 2719537 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719662 3` UTR Mrtf - chr3L_13_2715001 chr3L_2715001 RAL-208 997 chr3L 2751453 2751461 chr3L 2755748 2755756 F-element 4 4294 7.0 9.0 8.0 0.4 4303 chr3L 2751453 intron Mrtf - chr3L 2753604 intron Mrtf - chr3L 2755756 intron Mrtf - chr3L_4_2750001 chr3L_2750001 RAL-208 998 chr3L 2795730 2795742 chr3L 2795853 2795864 5 123 1.5 6.5 4.0 1.0 134 chr3L 2795730 intron CG43444 - chr3L 2795797 intron CG43444 - chr3L 2795864 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-208 999 chr3L 2854479 2854500 chr3L 2854557 2854578 4 77 6.0 5.5 5.8 0.6 99 chr3L 2854479 intron CG43444 - chr3L 2854528 intron CG43444 - chr3L 2854578 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-208 1000 chr3L 2927839 2927871 chr3L 2936116 2936148 Tirant 6 8277 2.0 5.0 3.5 1.3 8309 chr3L 2927839 intron Shab + chr3L 2931994 intron Shab + chr3L 2936148 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-208 1001 chr3L 3051749 3051757 chr3L 3051990 3051999 pogo 8 242 2.5 1.5 2.0 2.7 250 chr3L 3051749 3` UTR CG32485 + chr3L 3051874 intergenic CG32485 + chr3L 3051999 intergenic CG32485 + chr3L_8_3050001 chr3L_3050001 RAL-208 1002 chr3L 3057251 3057279 chr3L 3057395 3057423 9 144 1.5 5.5 3.5 2.0 172 chr3L 3057251 exon CG32486 - chr3L 3057337 intron CG32486 - chr3L 3057423 intron CG32486 - chr3L_9_3055001 chr3L_3055001 RAL-208 1003 chr3L 3061283 3061312 chr3L 3069866 3069895 Tirant 5 8583 3.0 0.5 1.8 1.8 8612 chr3L 3061283 intron CG32486 - chr3L 3065589 intron CG32486 - chr3L 3069895 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-208 1004 chr3L 3109592 3109614 chr3L 3109669 3109693 10 78 1.5 5.0 3.2 2.4 101 chr3L 3109592 intergenic not near genes chr3L 3109642 intergenic CG45066 - chr3L 3109693 intergenic CG45066 - chr3L_10_3105001 chr3L_3105001 RAL-208 1005 chr3L 3128190 3128213 chr3L 3128276 3128299 7 86 2.0 1.0 1.5 2.8 109 chr3L 3128190 intergenic prominin-like - chr3L 3128244 intergenic not near genes chr3L 3128299 intergenic not near genes chr3L_7_3125001 chr3L_3125001 RAL-208 1006 chr3L 3194379 3194386 chr3L 22908066 22908066 6 19713686 10.0 24.5 17.2 0.3 19713687 chr3L 3194379 intron Hsp83 + chr3L 13051222 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_6_13050001 chr3L_13050001 RAL-208 1007 chr3L 3269124 3269127 chr3L 3269215 3269218 5 91 0.0 5.0 2.5 1.4 94 chr3L 3269124 intergenic CG34265 + chr3L 3269171 intergenic CG34265 + chr3L 3269218 intergenic CG34265 + chr3L_5_3265001 chr3L_3265001 RAL-208 1008 chr3L 3280435 3280468 chr3L 3280530 3280559 13 94 2.5 1.0 1.8 4.6 124 chr3L 3280435 5` UTR CG12017 + chr3L 3280497 5` UTR CG12017 + chr3L 3280559 5` UTR CG12017 + chr3L_13_3280001 chr3L_3280001 RAL-208 1009 chr3L 3281441 3281473 chr3L 3281937 3281969 Doc 5 496 5.0 4.0 4.5 0.9 528 chr3L 3281441 intron CG12017 + chr3L 3281705 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-208 1010 chr3L 3310303 3310325 chr3L 3310382 3310404 12 79 4.5 6.0 5.2 1.9 101 chr3L 3310303 intron ZnT63C + chr3L 3310354 intron ZnT63C + chr3L 3310404 intron ZnT63C + chr3L_12_3310001 chr3L_3310001 RAL-208 1011 chr3L 3435037 3435056 chr3L 3435349 3435369 5 313 3.0 3.5 3.2 1.2 332 chr3L 3435037 intron eIF5B - chr3L 3435203 intron eIF5B - chr3L 3435369 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-208 1012 chr3L 3436293 3436316 chr3L 3436372 3436395 9 79 0.0 2.0 1.0 4.5 102 chr3L 3436293 intron eIF5B - chr3L 3436344 intron eIF5B - chr3L 3436395 intron eIF5B - chr3L_9_3435001 chr3L_3435001 RAL-208 1013 chr3L 3470156 3470186 chr3L 3470232 3470262 5 76 3.0 0.5 1.8 1.8 106 chr3L 3470156 intron CG14971 - chr3L 3470209 intron CG14971 - chr3L 3470262 intron CG14971 - chr3L_5_3470001 chr3L_3470001 RAL-208 1014 chr3L 3475075 3475099 chr3L 3475519 3475543 jockey 9 444 1.0 3.0 2.0 3.0 468 chr3L 3475075 intron CG42324 + chr3L 3475309 intron CG42324 + chr3L 3475543 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-208 1015 chr3L 3503981 3503982 chr3L 3504087 3504089 4 107 0.0 4.0 2.0 1.3 108 chr3L 3503981 intron CG42324 + chr3L 3504035 intron CG42324 + chr3L 3504089 intron CG42324 + chr3L_4_3500001 chr3L_3500001 RAL-208 1016 chr3L 3513078 3513083 chr3L 3513156 3513161 4 78 1.5 5.0 3.2 1.0 83 chr3L 3513078 intergenic ImpE2 - chr3L 3513120 intergenic ImpE2 - chr3L 3513161 intergenic ImpE2 - chr3L_4_3510001 chr3L_3510001 RAL-208 1017 chr3L 3716560 3716593 chr3L 3716646 3716679 9 86 1.5 4.0 2.8 2.4 119 chr3L 3716560 3` UTR CG32264 - chr3L 3716620 3` UTR CG32264 - chr3L 3716679 3` UTR CG32264 - chr3L_9_3715001 chr3L_3715001 RAL-208 1018 chr3L 3753261 3753291 chr3L 3753354 3753384 11 93 2.0 2.5 2.2 3.4 123 chr3L 3753261 intron CG32264 - chr3L 3753322 intron CG32264 - chr3L 3753384 intron CG32264 - chr3L_11_3750001 chr3L_3750001 RAL-208 1019 chr3L 3763762 3763779 chr3L 3763843 3763860 9 81 1.5 0.0 0.8 5.0 98 chr3L 3763762 intron CG32264 - chr3L 3763811 intron CG32264 - chr3L 3763860 intron CG32264 - chr3L_9_3760001 chr3L_3760001 RAL-208 1020 chr3L 3777066 3777067 chr3L 22908066 22908066 6 19131000 9.5 24.5 17.0 0.3 19131000 chr3L 3777066 intron CG32264 - chr3L 13342566 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_6_13340001 chr3L_13340001 RAL-208 1021 chr3L 3783270 3783281 chr3L 3783347 3783357 5 77 1.5 2.5 2.0 1.7 87 chr3L 3783270 intron CG32264 - chr3L 3783314 intron CG32264 - chr3L 3783357 intron CG32264 - chr3L_5_3780001 chr3L_3780001 RAL-208 1022 chr3L 3795591 3795625 chr3L 3795668 3795702 12 77 1.5 0.5 1.0 6.0 111 chr3L 3795591 intron CG32264 - chr3L 3795646 intron CG32264 - chr3L 3795702 intron CG32264 - chr3L_12_3795001 chr3L_3795001 RAL-208 1023 chr3L 3797240 3797263 chr3L 3797321 3797345 13 82 3.5 1.5 2.5 3.7 105 chr3L 3797240 intron CG32264 - chr3L 3797292 intron CG32264 - chr3L 3797345 intron CG32264 - chr3L_13_3795001 chr3L_3795001 RAL-208 1024 chr3L 3815053 3815083 chr3L 3815134 3815164 11 81 2.0 1.0 1.5 4.4 111 chr3L 3815053 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815164 intron,intron Scsalpha +,CR43932 - chr3L_11_3815001 chr3L_3815001 RAL-208 1025 chr3L 3865695 3865695 chr3L 3865783 3865784 6 89 2.5 6.5 4.5 1.1 89 chr3L 3865695 intergenic not near genes chr3L 3865740 intergenic not near genes chr3L 3865784 intergenic not near genes chr3L_6_3865001 chr3L_3865001 RAL-208 1026 chr3L 3889133 3889140 chr3L 3889216 3889223 5 83 6.0 4.0 5.0 0.8 90 chr3L 3889133 intergenic not near genes chr3L 3889178 intergenic not near genes chr3L 3889223 intergenic not near genes chr3L_5_3885001 chr3L_3885001 RAL-208 1027 chr3L 3921399 3921407 chr3L 3921663 3921671 5 264 3.5 4.0 3.8 1.0 272 chr3L 3921399 intron Eip63F-1 - chr3L 3921535 intron Eip63F-1 - chr3L 3921671 intron Eip63F-1 - chr3L_5_3920001 chr3L_3920001 RAL-208 1028 chr3L 3935827 3935840 chr3L 3935905 3935917 7 78 1.0 3.0 2.0 2.3 90 chr3L 3935827 5` UTR Eip63F-2 + chr3L 3935872 5` UTR Eip63F-2 + chr3L 3935917 5` UTR Eip63F-2 + chr3L_7_3935001 chr3L_3935001 RAL-208 1029 chr3L 3954268 3954271 chr3L 18135862 18135866 4 14181595 26.0 6.5 16.2 0.2 14181598 chr3L 3954268 3` UTR CG12605 - chr3L 11045067 intron CG43693 - chr3L 18135866 3` UTR CR44669 - chr3L_4_11045001 chr3L_11045001 RAL-208 1030 chr3L 3981760 3981778 chr3L 3981842 3981861 10 82 5.0 5.5 5.2 1.6 101 chr3L 3981760 intergenic not near genes chr3L 3981810 intergenic not near genes chr3L 3981861 intergenic not near genes chr3L_10_3980001 chr3L_3980001 RAL-208 1031 chr3L 4015746 4015764 chr3L 4015828 4015847 11 83 2.5 5.5 4.0 2.2 101 chr3L 4015746 intergenic not near genes chr3L 4015796 intergenic not near genes chr3L 4015847 intergenic not near genes chr3L_11_4015001 chr3L_4015001 RAL-208 1032 chr3L 4116283 4116297 chr3L 4116367 4116381 7 84 2.5 6.0 4.2 1.3 98 chr3L 4116283 intron Chd64 - chr3L 4116332 intron Chd64 - chr3L 4116381 intron Chd64 - chr3L_7_4115001 chr3L_4115001 RAL-208 1033 chr3L 4146818 4146826 chr3L 4146898 4146908 4 82 0.0 3.5 1.8 1.4 90 chr3L 4146818 intergenic not near genes chr3L 4146863 intergenic not near genes chr3L 4146908 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-208 1034 chr3L 4328740 4328760 chr3L 4336237 4336253 412 7 7497 4.0 1.0 2.5 2.0 7513 chr3L 4328740 intron Cip4 - chr3L 4332496 intron Cip4 - chr3L 4336253 intron Cip4 - chr3L_7_4330001 chr3L_4330001 RAL-208 1035 chr3L 4343510 4343519 chr3L 4343587 4343593 7 76 1.0 0.5 0.8 3.9 83 chr3L 4343510 intron Cip4 - chr3L 4343552 intron Cip4 - chr3L 4343593 intron Cip4 - chr3L_7_4340001 chr3L_4340001 RAL-208 1036 chr3L 4484723 4484748 chr3L 4484801 4484826 6 78 1.5 3.0 2.2 1.9 103 chr3L 4484723 intergenic CG11350 +,CG13722 - chr3L 4484774 intergenic CG13722 -,CG11350 + chr3L 4484826 intergenic CG13722 -,CG11350 + chr3L_6_4480001 chr3L_4480001 RAL-208 1037 chr3L 4491386 4491401 chr3L 4491479 4491494 8 93 3.5 0.0 1.8 2.9 108 chr3L 4491386 intergenic CG13722 - chr3L 4491440 intergenic CG13722 - chr3L 4491494 intergenic not near genes chr3L_8_4490001 chr3L_4490001 RAL-208 1038 chr3L 4519418 4519451 chr3L 4519494 4519528 10 77 1.5 0.0 0.8 5.6 110 chr3L 4519418 intron Tie - chr3L 4519473 intron Tie - chr3L 4519528 intron Tie - chr3L_10_4515001 chr3L_4515001 RAL-208 1039 chr3L 4610084 4610100 chr3L 4610232 4610249 10 148 2.5 2.5 2.5 2.9 165 chr3L 4610084 intron Src64B - chr3L 4610166 intron Src64B - chr3L 4610249 intron Src64B - chr3L_10_4610001 chr3L_4610001 RAL-208 1040 chr3L 4657970 4658001 chr3L 4658432 4658463 14 462 0.0 2.0 1.0 7.0 493 chr3L 4657970 intron axo - chr3L 4658216 intron axo - chr3L 4658463 intron axo - chr3L_14_4655001 chr3L_4655001 RAL-208 1041 chr3L 4775853 4775875 chr3L 4775941 4775963 8 88 5.0 3.0 4.0 1.6 110 chr3L 4775853 intron RhoGEF64C + chr3L 4775908 intron RhoGEF64C + chr3L 4775963 intron RhoGEF64C + chr3L_8_4775001 chr3L_4775001 RAL-208 1042 chr3L 4840405 4840417 chr3L 4840514 4840526 5 109 2.5 0.0 1.2 2.3 121 chr3L 4840405 intergenic CG13707 - chr3L 4840466 intergenic CG13707 - chr3L 4840526 intergenic CG13707 - chr3L_5_4840001 chr3L_4840001 RAL-208 1043 chr3L 4858325 4858336 chr3L 4858415 4858423 6 90 4.5 5.5 5.0 1.0 98 chr3L 4858325 intergenic not near genes chr3L 4858374 intergenic not near genes chr3L 4858423 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-208 1044 chr3L 4901129 4901153 chr3L 4907318 4907343 diver 10 6190 2.5 1.0 1.8 3.6 6214 chr3L 4901129 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-208 1045 chr3L 4985372 4985389 chr3L 4985451 4985468 6 79 2.5 2.0 2.2 1.9 96 chr3L 4985372 intron Con - chr3L 4985420 intron Con - chr3L 4985468 intron Con - chr3L_6_4985001 chr3L_4985001 RAL-208 1046 chr3L 4993692 4993715 chr3L 4995469 4995492 5 1777 11.0 17.5 14.2 0.3 1800 chr3L 4993692 intron Con - chr3L 4994592 intron,exon Con -,CG32232 - chr3L 4995492 intron,exon Con -,CG32232 - chr3L_5_4990001 chr3L_4990001 RAL-208 1047 chr3L 4993041 4993074 chr3L 4995731 4995760 13 2687 17.0 31.0 24.0 0.5 2719 chr3L 4993041 intron Con - chr3L 4994400 intron,exon Con -,CG32232 - chr3L 4995760 intron,exon Con -,CG32232 - chr3L_13_4990001 chr3L_4990001 RAL-208 1048 chr3L 5034159 5034168 chr3L 5043311 5043320 roo 5 9151 6.0 0.0 3.0 1.2 9161 chr3L 5034159 intron Con - chr3L 5038740 intron Con - chr3L 5043320 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-208 1049 chr3L 5066311 5066325 chr3L 5066410 5066424 6 98 0.0 0.5 0.2 5.0 113 chr3L 5066311 intron Con - chr3L 5066368 intron Con - chr3L 5066424 intron Con - chr3L_6_5065001 chr3L_5065001 RAL-208 1050 chr3L 5103613 5103631 chr3L 5103693 5103710 4 80 4.0 0.0 2.0 1.3 97 chr3L 5103613 intergenic not near genes chr3L 5103662 intergenic not near genes chr3L 5103710 intergenic not near genes chr3L_4_5100001 chr3L_5100001 RAL-208 1051 chr3L 5104488 5104506 chr3L 5124622 5124640 11 20133 2.5 7.5 5.0 1.8 20152 chr3L 5104488 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124640 intergenic not near genes chr3L_11_5110001 chr3L_5110001 RAL-208 1052 chr3L 5130928 5130956 chr3L 5131031 5131059 6 103 4.5 1.5 3.0 1.5 131 chr3L 5130928 intergenic not near genes chr3L 5130994 intergenic not near genes chr3L 5131059 intergenic CG15212 + chr3L_6_5130001 chr3L_5130001 RAL-208 1053 chr3L 5212237 5212269 chr3L 5212320 5212352 8 82 3.0 1.5 2.2 2.5 115 chr3L 5212237 intron shep - chr3L 5212294 intron shep - chr3L 5212352 intron shep - chr3L_8_5210001 chr3L_5210001 RAL-208 1054 chr3L 5223422 5223450 chr3L 5223504 5223530 6 81 1.5 5.5 3.5 1.3 108 chr3L 5223422 intron shep - chr3L 5223476 intron shep - chr3L 5223530 intron shep - chr3L_6_5220001 chr3L_5220001 RAL-208 1055 chr3L 5327464 5327475 chr3L 5327549 5327560 8 85 3.5 1.0 2.2 2.5 96 chr3L 5327464 intergenic not near genes chr3L 5327512 intergenic not near genes chr3L 5327560 intergenic not near genes chr3L_8_5325001 chr3L_5325001 RAL-208 1056 chr3L 5458065 5458073 chr3L 5466667 5466674 Max-element 5 8601 7.0 4.5 5.8 0.7 8609 chr3L 5458065 intergenic not near genes chr3L 5462370 intergenic not near genes chr3L 5466674 intergenic not near genes chr3L_5_5460001 chr3L_5460001 RAL-208 1057 chr3L 5482940 5483084 chr3L 5483149 5483203 10 146 0.0 0.0 0.0 10.0 263 chr3L 5482940 exon CG4835 + chr3L 5483072 exon CG4835 + chr3L 5483203 exon CG4835 + chr3L_10_5480001 chr3L_5480001 RAL-208 1058 chr3L 5498418 5498427 chr3L 5498495 5498504 5 77 0.0 6.0 3.0 1.2 86 chr3L 5498418 exon blanks - chr3L 5498461 exon blanks - chr3L 5498504 exon blanks - chr3L_5_5495001 chr3L_5495001 RAL-208 1059 chr3L 5537723 5537755 chr3L 5538065 5538095 jockey 13 342 2.0 3.5 2.8 3.4 372 chr3L 5537723 intergenic not near genes chr3L 5537909 intergenic not near genes chr3L 5538095 intergenic CG10625 - chr3L_13_5535001 chr3L_5535001 RAL-208 1060 chr3L 5561663 5561687 chr3L 5561745 5561769 4 82 0.5 1.0 0.8 2.2 106 chr3L 5561663 intergenic Sucb -,sinu - chr3L 5561716 3` UTR Sucb - chr3L 5561769 3` UTR Sucb - chr3L_4_5560001 chr3L_5560001 RAL-208 1061 chr3L 5727176 5727190 chr3L 5727649 5727662 7 472 4.5 1.0 2.8 1.8 486 chr3L 5727176 intron sif + chr3L 5727419 intron sif + chr3L 5727662 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-208 1062 chr3L 5743253 5743284 chr3L 5743342 5743373 9 89 0.5 2.5 1.5 3.6 120 chr3L 5743253 intron sif + chr3L 5743313 intron sif + chr3L 5743373 intron sif + chr3L_9_5740001 chr3L_5740001 RAL-208 1063 chr3L 5855570 5855570 chr3L 22908066 22908067 5 17052497 9.0 24.5 16.8 0.3 17052497 chr3L 5855570 intergenic not near genes chr3L 14381818 intergenic CG43120 + chr3L 22908067 intergenic not near genes chr3L_5_14380001 chr3L_14380001 RAL-208 1064 chr3L 5910037 5910056 chr3L 5910277 5910297 pogo 7 241 5.0 6.0 5.5 1.1 260 chr3L 5910037 intron CG13288 + chr3L 5910167 intron CG13288 + chr3L 5910297 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-208 1065 chr3L 5916826 5916857 chr3L 5916913 5916944 9 87 4.5 0.5 2.5 2.6 118 chr3L 5916826 intron CG13288 + chr3L 5916885 intron CG13288 + chr3L 5916944 3` UTR CG13288 + chr3L_9_5915001 chr3L_5915001 RAL-208 1066 chr3L 5926312 5926348 chr3L 5926502 5926538 BS 18 189 3.5 3.0 3.2 4.3 226 chr3L 5926312 intron Vap-33B + chr3L 5926425 intron Vap-33B + chr3L 5926538 intron Vap-33B + chr3L_18_5925001 chr3L_5925001 RAL-208 1067 chr3L 5983830 5983865 chr3L 5983951 5983986 5 121 4.0 0.0 2.0 1.7 156 chr3L 5983830 3` UTR CR45439 - chr3L 5983908 intergenic CR45439 -,CR45440 - chr3L 5983986 intergenic CR45439 -,CR45440 - chr3L_5_5980001 chr3L_5980001 RAL-208 1068 chr3L 5992595 5992621 chr3L 5992697 5992723 10 101 5.5 3.5 4.5 1.8 128 chr3L 5992595 intergenic not near genes chr3L 5992659 intergenic not near genes chr3L 5992723 intergenic not near genes chr3L_10_5990001 chr3L_5990001 RAL-208 1069 chr3L 6001678 6001714 chr3L 6004378 6004414 jockey 9 2700 1.0 2.5 1.8 3.2 2736 chr3L 6001678 intron PVRAP + chr3L 6003046 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_9_6000001 chr3L_6000001 RAL-208 1070 chr3L 6040366 6040394 chr3L 6042722 6042750 Doc 15 2356 1.0 5.0 3.0 3.8 2384 chr3L 6040366 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042750 intergenic not near genes chr3L_15_6040001 chr3L_6040001 RAL-208 1071 chr3L 6052648 6052669 chr3L 6052733 6052754 8 85 1.5 9.0 5.2 1.3 106 chr3L 6052648 exon Jon65Aii + chr3L 6052701 intron Jon65Aii + chr3L 6052754 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-208 1072 chr3L 6065014 6065045 chr3L 6065091 6065122 7 77 0.5 3.0 1.8 2.5 108 chr3L 6065014 intergenic not near genes chr3L 6065068 intergenic not near genes chr3L 6065122 intergenic not near genes chr3L_7_6065001 chr3L_6065001 RAL-208 1073 chr3L 6155697 6155713 chr3L 6155783 6155799 5 86 3.0 5.5 4.2 1.0 102 chr3L 6155697 intergenic CR45421 - chr3L 6155748 intergenic not near genes chr3L 6155799 intergenic not near genes chr3L_5_6155001 chr3L_6155001 RAL-208 1074 chr3L 6220915 6220948 chr3L 6230067 6230100 roo 19 9151 4.0 2.5 3.2 4.5 9185 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_19_6225001 chr3L_6225001 RAL-208 1075 chr3L 6284953 6284975 chr3L 6285047 6285068 14 94 4.5 2.5 3.5 3.1 115 chr3L 6284953 intergenic not near genes chr3L 6285010 intergenic not near genes chr3L 6285068 intergenic not near genes chr3L_14_6285001 chr3L_6285001 RAL-208 1076 chr3L 6335019 6335041 chr3L 6335490 6335511 297 14 471 2.0 7.0 4.5 2.5 492 chr3L 6335019 intron CG13300 - chr3L 6335265 intron CG13300 - chr3L 6335511 intron CG13300 - chr3L_14_6335001 chr3L_6335001 RAL-208 1077 chr3L 6405657 6405678 chr3L 6432121 6432142 roo 6 26464 3.5 5.5 4.5 1.1 26485 chr3L 6405657 intron CG42747 + chr3L 6418900 intron CG42747 + chr3L 6432142 intron CG42747 + chr3L_6_6415001 chr3L_6415001 RAL-208 1078 chr3L 6562838 6562843 chr3L 6562916 6562923 8 80 5.0 2.0 3.5 1.8 85 chr3L 6562838 intron CG18769 + chr3L 6562880 intron CG18769 + chr3L 6562923 intron CG18769 + chr3L_8_6560001 chr3L_6560001 RAL-208 1079 chr3L 6632416 6632446 chr3L 6632503 6632533 18 87 3.0 2.5 2.8 4.7 117 chr3L 6632416 intron GluRIA + chr3L 6632474 intron GluRIA + chr3L 6632533 intron GluRIA + chr3L_18_6630001 chr3L_6630001 RAL-208 1080 chr3L 6658396 6658431 chr3L 6658479 6658514 11 83 2.5 5.5 4.0 2.2 118 chr3L 6658396 intergenic not near genes chr3L 6658455 intergenic not near genes chr3L 6658514 intergenic not near genes chr3L_11_6655001 chr3L_6655001 RAL-208 1081 chr3L 6668983 6668996 chr3L 6669064 6669077 5 81 4.0 0.0 2.0 1.7 94 chr3L 6668983 intergenic not near genes chr3L 6669030 intergenic not near genes chr3L 6669077 intergenic not near genes chr3L_5_6665001 chr3L_6665001 RAL-208 1082 chr3L 6781120 6781156 chr3L 6783132 6783169 Doc 8 2013 1.5 4.5 3.0 2.0 2049 chr3L 6781120 intergenic not near genes chr3L 6782144 intergenic not near genes chr3L 6783169 intergenic not near genes chr3L_8_6780001 chr3L_6780001 RAL-208 1083 chr3L 6811874 6811899 chr3L 6811974 6811999 7 100 2.5 3.0 2.8 1.8 125 chr3L 6811874 intergenic not near genes chr3L 6811936 intergenic not near genes chr3L 6811999 intergenic not near genes chr3L_7_6810001 chr3L_6810001 RAL-208 1084 chr3L 6855935 6855955 chr3L 6860719 6860739 Doc 5 4783 1.5 3.5 2.5 1.4 4804 chr3L 6855935 intergenic not near genes chr3L 6858337 intergenic not near genes chr3L 6860739 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-208 1085 chr3L 6875240 6875252 chr3L 6875317 6875329 4 76 1.5 0.0 0.8 2.2 89 chr3L 6875240 intergenic not near genes chr3L 6875284 intergenic not near genes chr3L 6875329 intergenic not near genes chr3L_4_6875001 chr3L_6875001 RAL-208 1086 chr3L 6887517 6887535 chr3L 6895008 6895027 roo 6 7492 1.0 3.5 2.2 1.9 7510 chr3L 6887517 intergenic not near genes chr3L 6891272 intergenic not near genes chr3L 6895027 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-208 1087 chr3L 6934336 6934362 chr3L 6934447 6934473 5 111 1.5 2.5 2.0 1.7 137 chr3L 6934336 exon CG14820 + chr3L 6934404 intron CG14820 + chr3L 6934473 intron CG14820 + chr3L_5_6930001 chr3L_6930001 RAL-208 1088 chr3L 6974509 6974524 chr3L 6974609 6974625 5 100 0.0 4.0 2.0 1.7 116 chr3L 6974509 intron Galphai - chr3L 6974567 intron Galphai - chr3L 6974625 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-208 1089 chr3L 6990726 6990747 chr3L 6990803 6990827 8 80 1.5 2.0 1.8 2.9 101 chr3L 6990726 5` UTR bin + chr3L 6990776 5` UTR bin + chr3L 6990827 5` UTR bin + chr3L_8_6990001 chr3L_6990001 RAL-208 1090 chr3L 6994887 6994917 chr3L 6995498 6995527 BS 4 610 1.0 0.0 0.5 2.7 640 chr3L 6994887 intergenic bin + chr3L 6995207 intergenic not near genes chr3L 6995527 intergenic not near genes chr3L_4_6995001 chr3L_6995001 RAL-208 1091 chr3L 7082540 7082541 chr3L 19427054 19427055 4 12344514 5.0 13.0 9.0 0.4 12344515 chr3L 7082540 intergenic not near genes chr3L 13254798 intron caps + chr3L 19427055 intergenic not near genes chr3L_4_13250001 chr3L_13250001 RAL-208 1092 chr3L 7090911 7090917 chr3L 7090995 7091001 7 84 4.0 4.0 4.0 1.4 90 chr3L 7090911 intergenic not near genes chr3L 7090956 intergenic not near genes chr3L 7091001 intergenic not near genes chr3L_7_7090001 chr3L_7090001 RAL-208 1093 chr3L 7112586 7112612 chr3L 7112673 7112699 7 87 6.0 2.0 4.0 1.4 113 chr3L 7112586 intron form3 + chr3L 7112642 intron form3 + chr3L 7112699 intron form3 + chr3L_7_7110001 chr3L_7110001 RAL-208 1094 chr3L 7129965 7129987 chr3L 7130157 7130178 BS 6 192 2.0 2.5 2.2 1.9 213 chr3L 7129965 intergenic CG15829 + chr3L 7130072 intergenic CG15829 + chr3L 7130178 intergenic not near genes chr3L_6_7130001 chr3L_7130001 RAL-208 1095 chr3L 7150882 7150899 chr3L 7150958 7150975 8 76 0.5 4.0 2.2 2.5 93 chr3L 7150882 intron corn - chr3L 7150928 intron corn - chr3L 7150975 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-208 1096 chr3L 7175036 7175049 chr3L 7175266 7175279 7 230 5.5 2.5 4.0 1.4 243 chr3L 7175036 intron Dscam2 - chr3L 7175158 intron Dscam2 - chr3L 7175279 intron Dscam2 - chr3L_7_7175001 chr3L_7175001 RAL-208 1097 chr3L 7222448 7222476 chr3L 7222528 7222556 9 80 5.0 5.5 5.2 1.5 108 chr3L 7222448 intergenic CR45410 + chr3L 7222502 intergenic CR45410 + chr3L 7222556 intergenic CR45410 + chr3L_9_7220001 chr3L_7220001 RAL-208 1098 chr3L 7262498 7262518 chr3L 7262597 7262617 4 99 3.0 0.0 1.5 1.6 119 chr3L 7262498 intron CG14830 - chr3L 7262558 intron CG14830 - chr3L 7262617 intron CG14830 - chr3L_4_7260001 chr3L_7260001 RAL-208 1099 chr3L 7263324 7263359 chr3L 7263413 7263448 10 88 2.0 0.0 1.0 5.0 124 chr3L 7263324 intron CG14830 - chr3L 7263386 intron CG14830 - chr3L 7263448 intron CG14830 - chr3L_10_7260001 chr3L_7260001 RAL-208 1100 chr3L 7285451 7285465 chr3L 7285526 7285543 11 77 3.0 1.5 2.2 3.4 92 chr3L 7285451 intron unc-13-4A - chr3L 7285497 intron unc-13-4A - chr3L 7285543 intron unc-13-4A - chr3L_11_7285001 chr3L_7285001 RAL-208 1101 chr3L 7355677 7355705 chr3L 7362666 7362695 4 6990 24.5 33.5 29.0 0.1 7018 chr3L 7355677 exon CTCF - chr3L 7359186 exon pst - chr3L 7362695 exon Sec63 + chr3L_4_7355001 chr3L_7355001 RAL-208 1102 chr3L 7377315 7377335 chr3L 7380420 7380432 297 5 3103 5.0 2.0 3.5 1.1 3117 chr3L 7377315 intron SMSr - chr3L 7378874 intron SMSr - chr3L 7380432 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-208 1103 chr3L 7393133 7393162 chr3L 7393307 7393336 15 174 6.0 6.5 6.2 2.1 203 chr3L 7393133 intron CG8563 + chr3L 7393234 intron CG8563 + chr3L 7393336 intron CG8563 + chr3L_15_7390001 chr3L_7390001 RAL-208 1104 chr3L 7418215 7418217 chr3L 7418297 7418300 4 83 2.5 8.0 5.2 0.6 85 chr3L 7418215 intergenic not near genes chr3L 7418258 intergenic not near genes chr3L 7418300 intergenic not near genes chr3L_4_7415001 chr3L_7415001 RAL-208 1105 chr3L 7449070 7449091 chr3L 7449155 7449176 7 85 0.5 6.0 3.2 1.7 106 chr3L 7449070 intron CG42458 + chr3L 7449123 intron CG42458 + chr3L 7449176 intron CG42458 + chr3L_7_7445001 chr3L_7445001 RAL-208 1106 chr3L 7505415 7505436 chr3L 7505491 7505512 7 75 2.5 1.0 1.8 2.5 97 chr3L 7505415 intergenic CG7548 - chr3L 7505464 intergenic CG7548 - chr3L 7505512 intergenic CG7548 - chr3L_7_7505001 chr3L_7505001 RAL-208 1107 chr3L 7568947 7568976 chr3L 7569026 7569055 5 79 3.0 4.0 3.5 1.1 108 chr3L 7568947 exon frac + chr3L 7569001 intron frac + chr3L 7569055 intron frac + chr3L_5_7565001 chr3L_7565001 RAL-208 1108 chr3L 7575284 7575313 chr3L 7575370 7575399 9 86 4.0 2.5 3.2 2.1 115 chr3L 7575284 intergenic not near genes chr3L 7575342 intergenic not near genes chr3L 7575399 intergenic not near genes chr3L_9_7575001 chr3L_7575001 RAL-208 1109 chr3L 7576213 7576238 chr3L 7576301 7576326 9 88 6.5 4.5 5.5 1.4 113 chr3L 7576213 intergenic not near genes chr3L 7576270 intergenic not near genes chr3L 7576326 intergenic not near genes chr3L_9_7575001 chr3L_7575001 RAL-208 1110 chr3L 7591144 7591173 chr3L 7591235 7591264 10 90 4.0 1.0 2.5 2.9 120 chr3L 7591144 intergenic CG7716 - chr3L 7591204 intergenic CG7716 - chr3L 7591264 intergenic CG7716 - chr3L_10_7590001 chr3L_7590001 RAL-208 1111 chr3L 7711428 7711453 chr3L 7711874 7711899 9 446 4.0 3.5 3.8 1.9 471 chr3L 7711428 intron,intron CG32373 +,Ank2 - chr3L 7711664 intron,intron CG32373 +,Ank2 - chr3L 7711899 intron,intron CG32373 +,Ank2 - chr3L_9_7710001 chr3L_7710001 RAL-208 1112 chr3L 7793710 7793739 chr3L 7800762 7800790 297 14 7052 7.5 3.0 5.2 2.3 7080 chr3L 7793710 intron CG32369 - chr3L 7797250 intron CG32369 - chr3L 7800790 intron CG32369 - chr3L_14_7795001 chr3L_7795001 RAL-208 1113 chr3L 7817076 7817091 chr3L 7817208 7817224 6 133 0.0 0.0 0.0 6.0 148 chr3L 7817076 intron Pdp1 - chr3L 7817150 intron Pdp1 - chr3L 7817224 intron Pdp1 - chr3L_6_7815001 chr3L_7815001 RAL-208 1114 chr3L 7886513 7886545 chr3L 7889031 7889063 Stalker4 18 2518 1.5 5.5 3.5 4.0 2550 chr3L 7886513 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_18_7885001 chr3L_7885001 RAL-208 1115 chr3L 7903058 7903090 chr3L 7903140 7903172 15 82 0.5 3.0 1.8 5.4 114 chr3L 7903058 intron pbl - chr3L 7903115 intron pbl - chr3L 7903172 intron pbl - chr3L_15_7900001 chr3L_7900001 RAL-208 1116 chr3L 7916835 7916856 chr3L 7926005 7926027 roo 10 9171 5.0 3.0 4.0 2.0 9192 chr3L 7916835 3` UTR syd - chr3L 7921431 intron syd - chr3L 7926027 3` UTR syd - chr3L_10_7920001 chr3L_7920001 RAL-208 1117 chr3L 7935668 7935676 chr3L 22908066 22908067 4 14972394 8.5 24.5 16.5 0.2 14972399 chr3L 7935668 5` UTR syd - chr3L 15421868 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_15420001 chr3L_15420001 RAL-208 1118 chr3L 7985361 7985395 chr3L 7987689 7987723 NOF 14 2328 2.5 6.5 4.5 2.5 2362 chr3L 7985361 intron nmo + chr3L 7986542 intron nmo + chr3L 7987723 intron nmo + chr3L_14_7985001 chr3L_7985001 RAL-208 1119 chr3L 8019730 8019737 chr3L 8024146 8024153 NOF 5 4416 0.5 3.0 1.8 1.8 4423 chr3L 8019730 intron nmo + chr3L 8021942 intron nmo + chr3L 8024153 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-208 1120 chr3L 8051311 8051340 chr3L 8051388 8051414 17 77 4.0 2.5 3.2 4.0 103 chr3L 8051311 3` UTR nmo + chr3L 8051362 3` UTR nmo + chr3L 8051414 3` UTR nmo + chr3L_17_8050001 chr3L_8050001 RAL-208 1121 chr3L 8064600 8064624 chr3L 8064814 8064838 4 214 1.5 0.0 0.8 2.2 238 chr3L 8064600 intron Ect4 + chr3L 8064719 intron Ect4 + chr3L 8064838 intron Ect4 + chr3L_4_8060001 chr3L_8060001 RAL-208 1122 chr3L 8081293 8081296 chr3L 8081396 8081399 4 103 6.5 7.5 7.0 0.5 106 chr3L 8081293 intron Ect4 + chr3L 8081346 intron Ect4 + chr3L 8081399 intron Ect4 + chr3L_4_8080001 chr3L_8080001 RAL-208 1123 chr3L 8087625 8087632 chr3L 8087721 8087728 5 96 2.0 2.0 2.0 1.7 103 chr3L 8087625 intron Ect4 + chr3L 8087676 intron,3` UTR Ect4 +,CG7565 - chr3L 8087728 intron,3` UTR Ect4 +,CG7565 - chr3L_5_8085001 chr3L_8085001 RAL-208 1124 chr3L 8295789 8295826 chr3L 8295947 8295984 19 158 0.0 6.0 3.0 4.8 195 chr3L 8295789 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295984 intergenic not near genes chr3L_19_8295001 chr3L_8295001 RAL-208 1125 chr3L 8314756 8314762 chr3L 8314849 8314854 5 93 0.0 3.0 1.5 2.0 98 chr3L 8314756 intron CG7185 - chr3L 8314805 intron CG7185 - chr3L 8314854 intron CG7185 - chr3L_5_8310001 chr3L_8310001 RAL-208 1126 chr3L 8317596 8317596 chr3L 22908066 22908067 7 14590470 0.5 24.5 12.5 0.5 14590471 chr3L 8317596 intergenic not near genes chr3L 15612832 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_7_15610001 chr3L_15610001 RAL-208 1127 chr3L 8319438 8319473 chr3L 8319514 8319549 14 76 7.0 3.0 5.0 2.3 111 chr3L 8319438 intergenic CG43059 - chr3L 8319494 intergenic not near genes chr3L 8319549 intergenic not near genes chr3L_14_8315001 chr3L_8315001 RAL-208 1128 chr3L 8481781 8481804 chr3L 8490940 8490963 roo 8 9159 3.0 5.5 4.2 1.5 9182 chr3L 8481781 intron CG43163 - chr3L 8486372 intron CG43163 - chr3L 8490963 intron CG43163 - chr3L_8_8485001 chr3L_8485001 RAL-208 1129 chr3L 8498308 8498329 chr3L 8505775 8505796 blood 10 7467 3.0 8.5 5.8 1.5 7488 chr3L 8498308 intron CG43163 - chr3L 8502052 intron CG43163 - chr3L 8505796 intron CG43163 - chr3L_10_8500001 chr3L_8500001 RAL-208 1130 chr3L 8540716 8540739 chr3L 8540793 8540816 10 77 3.0 4.0 3.5 2.2 100 chr3L 8540716 intergenic not near genes chr3L 8540766 intergenic not near genes chr3L 8540816 intergenic not near genes chr3L_10_8540001 chr3L_8540001 RAL-208 1131 chr3L 8615042 8615054 chr3L 8615120 8615132 4 78 2.5 3.0 2.8 1.1 90 chr3L 8615042 exon CG6282 + chr3L 8615087 intron CG6282 + chr3L 8615132 intron CG6282 + chr3L_4_8615001 chr3L_8615001 RAL-208 1132 chr3L 8690602 8690631 chr3L 8690849 8690877 12 246 3.0 1.5 2.2 3.8 275 chr3L 8690602 intergenic not near genes chr3L 8690740 intergenic not near genes chr3L 8690877 intergenic not near genes chr3L_12_8690001 chr3L_8690001 RAL-208 1133 chr3L 8827509 8827541 chr3L 8827599 8827630 9 90 2.0 5.0 3.5 2.0 121 chr3L 8827509 5` UTR dally + chr3L 8827570 5` UTR dally + chr3L 8827630 5` UTR dally + chr3L_9_8825001 chr3L_8825001 RAL-208 1134 chr3L 8839726 8839751 chr3L 8839806 8839830 11 79 0.5 1.0 0.8 6.1 104 chr3L 8839726 intron dally + chr3L 8839778 intron dally + chr3L 8839830 intron dally + chr3L_11_8835001 chr3L_8835001 RAL-208 1135 chr3L 8849212 8849243 chr3L 8849292 8849319 7 79 0.5 0.5 0.5 4.7 107 chr3L 8849212 intron dally + chr3L 8849266 intron dally + chr3L 8849319 intron dally + chr3L_7_8845001 chr3L_8845001 RAL-208 1136 chr3L 8873816 8873842 chr3L 8874082 8874108 9 266 4.5 6.5 5.5 1.4 292 chr3L 8873816 intron dally + chr3L 8873962 intron dally + chr3L 8874108 intron dally + chr3L_9_8870001 chr3L_8870001 RAL-208 1137 chr3L 8874712 8874744 chr3L 8874912 8874944 15 200 3.5 4.5 4.0 3.0 232 chr3L 8874712 intron dally + chr3L 8874828 intron dally + chr3L 8874944 intron dally + chr3L_15_8870001 chr3L_8870001 RAL-208 1138 chr3L 8949400 8949510 chr3L 8949495 8949591 6 87 0.5 0.5 0.5 4.0 191 chr3L 8949400 intron,intron CG43783 -,orb2 - chr3L 8949496 intron,intron CG43783 -,orb2 - chr3L 8949591 intron,intron CG43783 -,orb2 - chr3L_6_8945001 chr3L_8945001 RAL-208 1139 chr3L 9003947 9003972 chr3L 9004032 9004057 16 85 3.0 0.0 1.5 6.4 110 chr3L 9003947 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004057 intergenic not near genes chr3L_16_9000001 chr3L_9000001 RAL-208 1140 chr3L 9024517 9024537 chr3L 9024597 9024617 8 80 2.0 7.0 4.5 1.5 100 chr3L 9024517 intergenic not near genes chr3L 9024567 intergenic not near genes chr3L 9024617 intergenic not near genes chr3L_8_9020001 chr3L_9020001 RAL-208 1141 chr3L 9029157 9029182 chr3L 9029243 9029268 6 86 1.0 0.0 0.5 4.0 111 chr3L 9029157 intergenic not near genes chr3L 9029212 intergenic not near genes chr3L 9029268 intergenic not near genes chr3L_6_9025001 chr3L_9025001 RAL-208 1142 chr3L 9030434 9030454 chr3L 9030513 9030530 8 78 0.5 0.0 0.2 6.7 96 chr3L 9030434 intergenic not near genes chr3L 9030482 intergenic not near genes chr3L 9030530 intergenic not near genes chr3L_8_9030001 chr3L_9030001 RAL-208 1143 chr3L 9076928 9076955 chr3L 9084488 9084515 412 9 7560 7.0 5.0 6.0 1.3 7587 chr3L 9076928 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084515 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-208 1144 chr3L 9130561 9130579 chr3L 9134322 9134340 412 8 3761 4.0 2.0 3.0 2.0 3779 chr3L 9130561 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-208 1145 chr3L 9142670 9142697 chr3L 9142885 9142912 4 215 5.0 1.5 3.2 1.0 242 chr3L 9142670 intron nwk + chr3L 9142791 intron nwk + chr3L 9142912 intron nwk + chr3L_4_9140001 chr3L_9140001 RAL-208 1146 chr3L 9312730 9312733 chr3L 9312808 9312811 4 78 6.0 3.0 4.5 0.7 81 chr3L 9312730 intergenic not near genes chr3L 9312770 intergenic not near genes chr3L 9312811 intergenic not near genes chr3L_4_9310001 chr3L_9310001 RAL-208 1147 chr3L 9356743 9356751 chr3L 9356818 9356827 4 76 3.5 3.0 3.2 1.0 84 chr3L 9356743 intron UGP - chr3L 9356785 intron UGP - chr3L 9356827 intron UGP - chr3L_4_9355001 chr3L_9355001 RAL-208 1148 chr3L 9443510 9443538 chr3L 9445301 9445327 S-element 7 1791 4.5 1.5 3.0 1.8 1817 chr3L 9443510 intron CG33926 + chr3L 9444418 intron CG33926 + chr3L 9445327 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-208 1149 chr3L 9498199 9498232 chr3L 9498275 9498309 12 76 6.5 1.0 3.8 2.5 110 chr3L 9498199 intron path - chr3L 9498254 intron path - chr3L 9498309 intron path - chr3L_12_9495001 chr3L_9495001 RAL-208 1150 chr3L 9501704 9501728 chr3L 9502190 9502214 roo 9 486 7.5 5.0 6.2 1.2 510 chr3L 9501704 intron path - chr3L 9501959 intron path - chr3L 9502214 intron path - chr3L_9_9500001 chr3L_9500001 RAL-208 1151 chr3L 9533754 9533785 chr3L 9541314 9541344 412 4 7559 0.0 3.5 1.8 1.4 7590 chr3L 9533754 intergenic not near genes chr3L 9537549 intergenic not near genes chr3L 9541344 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-208 1152 chr3L 9571904 9571931 chr3L 9572252 9572279 jockey 11 348 4.0 3.0 3.5 2.4 375 chr3L 9571904 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572279 intron CG42673 + chr3L_11_9570001 chr3L_9570001 RAL-208 1153 chr3L 9575907 9575938 chr3L 9580985 9581016 jockey 8 5077 8.5 1.5 5.0 1.3 5109 chr3L 9575907 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-208 1154 chr3L 9637858 9637886 chr3L 9637940 9637968 5 82 3.0 4.0 3.5 1.1 110 chr3L 9637858 intron fry - chr3L 9637913 intron fry - chr3L 9637968 intron fry - chr3L_5_9635001 chr3L_9635001 RAL-208 1155 chr3L 9639041 9639059 chr3L 9639125 9639140 8 84 0.0 4.5 2.2 2.5 99 chr3L 9639041 intron fry - chr3L 9639090 intron fry - chr3L 9639140 intron fry - chr3L_8_9635001 chr3L_9635001 RAL-208 1156 chr3L 9665847 9665859 chr3L 9666063 9666075 9 216 1.0 3.0 2.0 3.0 228 chr3L 9665847 intron fry - chr3L 9665961 intron fry - chr3L 9666075 intron fry - chr3L_9_9665001 chr3L_9665001 RAL-208 1157 chr3L 9732431 9732450 chr3L 9732509 9732528 10 77 3.5 2.5 3.0 2.5 97 chr3L 9732431 exon CG6749 - chr3L 9732480 intron CG6749 - chr3L 9732528 intron CG6749 - chr3L_10_9730001 chr3L_9730001 RAL-208 1158 chr3L 9775383 9775387 chr3L 9775740 9775747 7 360 0.0 3.5 1.8 2.5 364 chr3L 9775383 intron CG8177 + chr3L 9775565 intron CG8177 + chr3L 9775747 intron CG8177 + chr3L_7_9775001 chr3L_9775001 RAL-208 1159 chr3L 9807007 9807033 chr3L 9807144 9807170 8 136 1.0 4.5 2.8 2.1 163 chr3L 9807007 intron CG32052 + chr3L 9807088 intron CG32052 + chr3L 9807170 intron CG32052 + chr3L_8_9805001 chr3L_9805001 RAL-208 1160 chr3L 9824154 9824179 chr3L 9824233 9824258 12 79 1.0 0.0 0.5 8.0 104 chr3L 9824154 intron CG43897 + chr3L 9824206 intron CG43897 + chr3L 9824258 intron CG43897 + chr3L_12_9820001 chr3L_9820001 RAL-208 1161 chr3L 9829056 9829080 chr3L 9829138 9829162 7 82 2.0 7.0 4.5 1.3 106 chr3L 9829056 intron CG43897 + chr3L 9829109 intron CG43897 + chr3L 9829162 intron CG43897 + chr3L_7_9825001 chr3L_9825001 RAL-208 1162 chr3L 9918882 9918908 chr3L 9918977 9919000 13 94 4.0 5.0 4.5 2.4 118 chr3L 9918882 intron CG34356 + chr3L 9918941 intron CG34356 + chr3L 9919000 intron CG34356 + chr3L_13_9915001 chr3L_9915001 RAL-208 1163 chr3L 9929670 9929701 chr3L 9938451 9938482 roo 11 8781 4.0 5.5 4.8 1.9 8812 chr3L 9929670 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938482 intron CG34356 + chr3L_11_9930001 chr3L_9930001 RAL-208 1164 chr3L 10003161 10003169 chr3L 10003258 10003265 5 97 6.0 5.5 5.8 0.7 104 chr3L 10003161 intron dpr6 + chr3L 10003213 intron dpr6 + chr3L 10003265 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-208 1165 chr3L 10004841 10004852 chr3L 10004924 10004935 6 82 0.0 7.0 3.5 1.3 94 chr3L 10004841 intron dpr6 + chr3L 10004888 intron dpr6 + chr3L 10004935 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-208 1166 chr3L 10011602 10011623 chr3L 10011684 10011705 11 82 2.0 2.5 2.2 3.4 103 chr3L 10011602 intron dpr6 + chr3L 10011654 intron dpr6 + chr3L 10011705 intron dpr6 + chr3L_11_10010001 chr3L_10010001 RAL-208 1167 chr3L 10032551 10032568 chr3L 10032638 10032655 6 87 0.0 0.5 0.2 5.0 104 chr3L 10032551 intron dpr6 + chr3L 10032603 intron dpr6 + chr3L 10032655 intron dpr6 + chr3L_6_10030001 chr3L_10030001 RAL-208 1168 chr3L 10035158 10035158 chr3L 12476412 12476412 4 2441254 17.5 8.0 12.8 0.3 2441254 chr3L 10035158 intron dpr6 + chr3L 11255785 3` UTR scyl + chr3L 12476412 intron CG10663 - chr3L_4_11255001 chr3L_11255001 RAL-208 1169 chr3L 10041012 10041038 chr3L 10041088 10041115 9 76 4.5 5.5 5.0 1.5 103 chr3L 10041012 exon dpr6 + chr3L 10041064 intron dpr6 + chr3L 10041115 intron dpr6 + chr3L_9_10040001 chr3L_10040001 RAL-208 1170 chr3L 10049543 10049568 chr3L 10049623 10049648 8 79 2.5 4.0 3.2 1.9 105 chr3L 10049543 intron dpr6 + chr3L 10049596 intron dpr6 + chr3L 10049648 intron dpr6 + chr3L_8_10045001 chr3L_10045001 RAL-208 1171 chr3L 10134192 10134202 chr3L 10134378 10134387 4 186 4.0 2.5 3.2 1.0 195 chr3L 10134192 intron dpr6 + chr3L 10134290 intron dpr6 + chr3L 10134387 intron dpr6 + chr3L_4_10130001 chr3L_10130001 RAL-208 1172 chr3L 10191290 10191314 chr3L 10191400 10191425 13 111 4.0 6.0 5.0 2.2 135 chr3L 10191290 intron ect - chr3L 10191358 intron ect - chr3L 10191425 intron ect - chr3L_13_10190001 chr3L_10190001 RAL-208 1173 chr3L 10214734 10214830 chr3L 10214821 10214932 14 99 0.0 0.0 0.0 14.0 198 chr3L 10214734 intergenic not near genes chr3L 10214833 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_14_10210001 chr3L_10210001 RAL-208 1174 chr3L 10222740 10222777 chr3L 10222820 10222857 10 80 0.0 3.0 1.5 4.0 117 chr3L 10222740 intron scramb1 - chr3L 10222798 intron scramb1 - chr3L 10222857 intron scramb1 - chr3L_10_10220001 chr3L_10220001 RAL-208 1175 chr3L 10298672 10298699 chr3L 10298759 10298786 9 87 0.5 4.5 2.5 2.6 114 chr3L 10298672 intergenic not near genes chr3L 10298729 intergenic not near genes chr3L 10298786 intergenic not near genes chr3L_9_10295001 chr3L_10295001 RAL-208 1176 chr3L 10300060 10300071 chr3L 10300150 10300162 6 91 0.0 1.0 0.5 4.0 102 chr3L 10300060 intergenic not near genes chr3L 10300111 intergenic not near genes chr3L 10300162 intergenic not near genes chr3L_6_10300001 chr3L_10300001 RAL-208 1177 chr3L 10308748 10308773 chr3L 10308825 10308850 14 77 1.5 5.5 3.5 3.1 102 chr3L 10308748 intergenic not near genes chr3L 10308799 intergenic not near genes chr3L 10308850 intergenic not near genes chr3L_14_10305001 chr3L_10305001 RAL-208 1178 chr3L 10337619 10337639 chr3L 10337844 10337864 9 225 0.5 4.0 2.2 2.8 245 chr3L 10337619 intergenic not near genes chr3L 10337742 intergenic not near genes chr3L 10337864 intergenic not near genes chr3L_9_10335001 chr3L_10335001 RAL-208 1179 chr3L 10350960 10350964 chr3L 10351039 10351044 7 80 2.0 9.5 5.8 1.0 84 chr3L 10350960 intron CR44327 + chr3L 10351002 intron CR44327 + chr3L 10351044 intron CR44327 + chr3L_7_10350001 chr3L_10350001 RAL-208 1180 chr3L 10414947 10414977 chr3L 10417319 10417346 Doc 12 2371 0.0 6.0 3.0 3.0 2399 chr3L 10414947 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_12_10415001 chr3L_10415001 RAL-208 1181 chr3L 10494094 10494128 chr3L 10494171 10494206 17 77 1.5 3.0 2.2 5.3 112 chr3L 10494094 intron A2bp1 + chr3L 10494150 intron A2bp1 + chr3L 10494206 intron A2bp1 + chr3L_17_10490001 chr3L_10490001 RAL-208 1182 chr3L 10551461 10551482 chr3L 10551548 10551568 6 87 0.0 2.5 1.2 2.7 107 chr3L 10551461 intron A2bp1 + chr3L 10551514 intron A2bp1 + chr3L 10551568 intron A2bp1 + chr3L_6_10550001 chr3L_10550001 RAL-208 1183 chr3L 10579984 10580015 chr3L 10580063 10580089 12 78 3.0 3.5 3.2 2.9 105 chr3L 10579984 intron A2bp1 + chr3L 10580036 intron A2bp1 + chr3L 10580089 intron A2bp1 + chr3L_12_10580001 chr3L_10580001 RAL-208 1184 chr3L 10584289 10584301 chr3L 10584376 10584388 8 87 2.5 1.5 2.0 2.7 99 chr3L 10584289 intron A2bp1 + chr3L 10584338 intron A2bp1 + chr3L 10584388 intron A2bp1 + chr3L_8_10580001 chr3L_10580001 RAL-208 1185 chr3L 10601211 10601226 chr3L 10601304 10601319 14 92 0.5 3.0 1.8 5.0 108 chr3L 10601211 intergenic not near genes chr3L 10601265 intergenic not near genes chr3L 10601319 intergenic not near genes chr3L_14_10600001 chr3L_10600001 RAL-208 1186 chr3L 10621851 10621879 chr3L 10621938 10621966 10 87 3.0 3.5 3.2 2.4 115 chr3L 10621851 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621966 intergenic not near genes chr3L_10_10620001 chr3L_10620001 RAL-208 1187 chr3L 10658076 10658109 chr3L 10658153 10658186 12 77 0.5 2.5 1.5 4.8 110 chr3L 10658076 intron CG32066 - chr3L 10658131 intron CG32066 - chr3L 10658186 intron CG32066 - chr3L_12_10655001 chr3L_10655001 RAL-208 1188 chr3L 10694921 10694926 chr3L 10695013 10695018 4 92 4.5 1.0 2.8 1.1 97 chr3L 10694921 intron NijA - chr3L 10694970 intron NijA - chr3L 10695018 intron NijA - chr3L_4_10690001 chr3L_10690001 RAL-208 1189 chr3L 10721990 10722014 chr3L 10722072 10722092 6 81 0.5 0.0 0.2 5.0 102 chr3L 10721990 intergenic not near genes chr3L 10722041 intergenic not near genes chr3L 10722092 intergenic not near genes chr3L_6_10720001 chr3L_10720001 RAL-208 1190 chr3L 10723970 10723986 chr3L 10724071 10724087 5 100 2.0 2.0 2.0 1.7 117 chr3L 10723970 intergenic not near genes chr3L 10724028 intergenic not near genes chr3L 10724087 intergenic not near genes chr3L_5_10720001 chr3L_10720001 RAL-208 1191 chr3L 10851234 10851237 chr3L 22908066 22908066 4 12056830 15.0 24.5 19.8 0.2 12056832 chr3L 10851234 intergenic not near genes chr3L 16879650 intron Lmpt + chr3L 22908066 intergenic not near genes chr3L_4_16875001 chr3L_16875001 RAL-208 1192 chr3L 10887361 10887362 chr3L 10887439 10887441 5 79 0.0 4.5 2.2 1.6 80 chr3L 10887361 intergenic not near genes chr3L 10887401 intergenic not near genes chr3L 10887441 intergenic not near genes chr3L_5_10885001 chr3L_10885001 RAL-208 1193 chr3L 11083501 11083537 chr3L 11083599 11083635 12 98 0.5 5.0 2.8 3.2 134 chr3L 11083501 intron JIL-1 - chr3L 11083568 intron JIL-1 - chr3L 11083635 intron JIL-1 - chr3L_12_11080001 chr3L_11080001 RAL-208 1194 chr3L 11085676 11085703 chr3L 11085759 11085786 11 82 1.5 0.5 1.0 5.5 110 chr3L 11085676 exon JIL-1 - chr3L 11085731 intron JIL-1 - chr3L 11085786 intron JIL-1 - chr3L_11_11085001 chr3L_11085001 RAL-208 1195 chr3L 11087060 11087089 chr3L 11088849 11088878 S-element 22 1789 0.5 2.5 1.5 8.8 1818 chr3L 11087060 intron JIL-1 - chr3L 11087969 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_22_11085001 chr3L_11085001 RAL-208 1196 chr3L 11097507 11097535 chr3L 11097584 11097611 10 77 2.5 4.5 3.5 2.2 104 chr3L 11097507 intron,3` UTR pncr011:3L +,CG6272 - chr3L 11097559 intron,3` UTR pncr011:3L +,CG6272 - chr3L 11097611 intron,3` UTR pncr011:3L +,CG6272 - chr3L_10_11095001 chr3L_11095001 RAL-208 1197 chr3L 11105295 11105304 chr3L 11107006 11107015 X-element 6 1711 4.5 3.0 3.8 1.2 1720 chr3L 11105295 intergenic not near genes chr3L 11106155 intergenic not near genes chr3L 11107015 3` UTR CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-208 1198 chr3L 11230016 11230019 chr3L 11230112 11230116 6 97 3.0 10.5 6.8 0.8 100 chr3L 11230016 intergenic CG42671 + chr3L 11230066 intergenic CG42671 + chr3L 11230116 intergenic CG42671 + chr3L_6_11230001 chr3L_11230001 RAL-208 1199 chr3L 11264466 11264494 chr3L 11271417 11271444 17.6 7 6951 7.0 3.0 5.0 1.2 6978 chr3L 11264466 intergenic not near genes chr3L 11267955 intergenic not near genes chr3L 11271444 intergenic not near genes chr3L_7_11265001 chr3L_11265001 RAL-208 1200 chr3L 11305801 11305813 chr3L 22908066 22908066 11 11602262 5.0 24.5 14.8 0.7 11602265 chr3L 11305801 intergenic not near genes chr3L 17106934 intron Rbp6 - chr3L 22908066 intergenic not near genes chr3L_11_17105001 chr3L_17105001 RAL-208 1201 chr3L 11474628 11474659 chr3L 11474717 11474747 9 89 0.0 0.5 0.2 7.5 119 chr3L 11474628 intergenic Vha16-2 + chr3L 11474688 intergenic Vha16-2 + chr3L 11474747 intergenic Vha16-2 + chr3L_9_11470001 chr3L_11470001 RAL-208 1202 chr3L 11546280 11546310 chr3L 11546388 11546418 9 108 3.0 6.5 4.8 1.6 138 chr3L 11546280 intron Mob2 - chr3L 11546349 intron Mob2 - chr3L 11546418 intron Mob2 - chr3L_9_11545001 chr3L_11545001 RAL-208 1203 chr3L 11579145 11579173 chr3L 11579228 11579256 12 83 1.5 1.0 1.2 5.5 111 chr3L 11579145 intergenic not near genes chr3L 11579200 intergenic not near genes chr3L 11579256 intergenic CG43390 - chr3L_12_11575001 chr3L_11575001 RAL-208 1204 chr3L 11579558 11579582 chr3L 11579664 11579688 8 106 4.0 3.0 3.5 1.8 130 chr3L 11579558 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579688 intergenic CG43390 - chr3L_8_11575001 chr3L_11575001 RAL-208 1205 chr3L 11588739 11588755 chr3L 11588895 11588911 11 156 3.0 7.5 5.2 1.8 172 chr3L 11588739 intergenic not near genes chr3L 11588825 intergenic not near genes chr3L 11588911 intergenic not near genes chr3L_11_11585001 chr3L_11585001 RAL-208 1206 chr3L 11666253 11666284 chr3L 11666407 11666438 13 154 0.0 2.5 1.2 5.9 185 chr3L 11666253 intron CG32085 - chr3L 11666346 intron CG32085 - chr3L 11666438 intron CG32085 - chr3L_13_11665001 chr3L_11665001 RAL-208 1207 chr3L 11678095 11678125 chr3L 11678182 11678212 12 87 0.5 2.5 1.5 4.8 117 chr3L 11678095 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_12_11675001 chr3L_11675001 RAL-208 1208 chr3L 11723084 11723115 chr3L 11727878 11727910 Doc 17 4795 2.0 7.0 4.5 3.1 4826 chr3L 11723084 3` UTR Bmcp + chr3L 11725497 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_17_11725001 chr3L_11725001 RAL-208 1209 chr3L 11744011 11744041 chr3L 11744119 11744149 11 108 4.0 0.0 2.0 3.7 138 chr3L 11744011 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-208 1210 chr3L 11850146 11850165 chr3L 11850240 11850260 13 95 4.0 0.0 2.0 4.3 114 chr3L 11850146 intergenic not near genes chr3L 11850203 intergenic CG44837 - chr3L 11850260 intergenic CG44837 - chr3L_13_11850001 chr3L_11850001 RAL-208 1211 chr3L 11864557 11864585 chr3L 11865852 11865880 pogo 6 1295 7.0 5.0 6.0 0.9 1323 chr3L 11864557 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865880 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-208 1212 chr3L 11906426 11906452 chr3L 11906502 11906527 9 76 1.5 0.0 0.8 5.0 101 chr3L 11906426 intron CG44837 - chr3L 11906476 intron CG44837 - chr3L 11906527 intron CG44837 - chr3L_9_11905001 chr3L_11905001 RAL-208 1213 chr3L 11915980 11915987 chr3L 11916062 11916068 6 82 5.5 0.0 2.8 1.6 88 chr3L 11915980 intron CG44837 - chr3L 11916024 intron CG44837 - chr3L 11916068 intron CG44837 - chr3L_6_11915001 chr3L_11915001 RAL-208 1214 chr3L 11943498 11943522 chr3L 11943595 11943623 10 101 0.5 3.5 2.0 3.3 125 chr3L 11943498 intergenic Rpt4R +,CG5883 - chr3L 11943560 intergenic Rpt4R +,CG5883 - chr3L 11943623 intergenic CG5883 -,Rpt4R + chr3L_10_11940001 chr3L_11940001 RAL-208 1215 chr3L 12013917 12013938 chr3L 12014008 12014029 10 91 2.0 2.0 2.0 3.3 112 chr3L 12013917 intron rols - chr3L 12013973 intron rols - chr3L 12014029 intron rols - chr3L_10_12010001 chr3L_12010001 RAL-208 1216 chr3L 12046087 12046112 chr3L 12046165 12046188 12 77 2.0 6.0 4.0 2.4 101 chr3L 12046087 intron rols - chr3L 12046138 intron rols - chr3L 12046188 intron rols - chr3L_12_12045001 chr3L_12045001 RAL-208 1217 chr3L 12052709 12052723 chr3L 12052798 12052812 4 89 4.0 3.0 3.5 0.9 103 chr3L 12052709 intron rols - chr3L 12052760 intron rols - chr3L 12052812 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-208 1218 chr3L 12092401 12092421 chr3L 12092478 12092498 5 76 0.5 1.5 1.0 2.5 97 chr3L 12092401 intergenic not near genes chr3L 12092450 intergenic not near genes chr3L 12092498 intergenic not near genes chr3L_5_12090001 chr3L_12090001 RAL-208 1219 chr3L 12119758 12119786 chr3L 12119855 12119883 16 97 5.0 0.0 2.5 4.6 125 chr3L 12119758 3` UTR ssp + chr3L 12119820 intergenic ssp +,CG11560 + chr3L 12119883 intergenic ssp +,CG11560 + chr3L_16_12115001 chr3L_12115001 RAL-208 1220 chr3L 12131870 12131873 chr3L 12131979 12131982 6 109 3.0 0.0 1.5 2.4 112 chr3L 12131870 intergenic Lsp2 +,CG11534 + chr3L 12131926 intergenic Lsp2 +,CG11534 + chr3L 12131982 intergenic Lsp2 +,CG11534 + chr3L_6_12130001 chr3L_12130001 RAL-208 1221 chr3L 12221443 12221457 chr3L 12221549 12221564 5 106 9.0 4.5 6.8 0.6 121 chr3L 12221443 intron app - chr3L 12221504 intron app - chr3L 12221564 intron app - chr3L_5_12220001 chr3L_12220001 RAL-208 1222 chr3L 12304092 12304118 chr3L 12304168 12304194 10 75 0.5 7.0 3.8 2.1 102 chr3L 12304092 intergenic not near genes chr3L 12304143 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_10_12300001 chr3L_12300001 RAL-208 1223 chr3L 12319736 12319768 chr3L 12319883 12319917 9 149 6.5 0.0 3.2 2.1 181 chr3L 12319736 intergenic not near genes chr3L 12319826 intergenic not near genes chr3L 12319917 intergenic not near genes chr3L_9_12315001 chr3L_12315001 RAL-208 1224 chr3L 12339570 12339571 chr3L 12339651 12339654 4 82 0.5 6.5 3.5 0.9 84 chr3L 12339570 3` UTR CrzR - chr3L 12339612 3` UTR CrzR - chr3L 12339654 3` UTR CrzR - chr3L_4_12335001 chr3L_12335001 RAL-208 1225 chr3L 12364278 12364288 chr3L 12366808 12366819 4 2530 2.5 0.0 1.2 1.8 2541 chr3L 12364278 intergenic not near genes chr3L 12365548 intergenic not near genes chr3L 12366819 intergenic not near genes chr3L_4_12365001 chr3L_12365001 RAL-208 1226 chr3L 12369536 12369567 chr3L 12369626 12369657 9 90 1.5 1.5 1.5 3.6 121 chr3L 12369536 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369657 intron Ncc69 - chr3L_9_12365001 chr3L_12365001 RAL-208 1227 chr3L 12491706 12491709 chr3L 12491789 12491792 4 83 0.0 2.5 1.2 1.8 86 chr3L 12491706 intergenic CG10657 -,CR45682 + chr3L 12491749 intergenic CG10657 -,CR45682 + chr3L 12491792 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-208 1228 chr3L 12564003 12564011 chr3L 12564219 12564226 7 216 0.0 1.0 0.5 4.7 223 chr3L 12564003 intron sowah - chr3L 12564114 intron sowah - chr3L 12564226 intron sowah - chr3L_7_12560001 chr3L_12560001 RAL-208 1229 chr3L 12566814 12566842 chr3L 12566919 12566947 6 103 3.5 2.0 2.8 1.6 133 chr3L 12566814 intron sowah - chr3L 12566880 intron sowah - chr3L 12566947 intron sowah - chr3L_6_12565001 chr3L_12565001 RAL-208 1230 chr3L 12591635 12591637 chr3L 12591712 12591714 5 76 5.0 8.5 6.8 0.6 79 chr3L 12591635 intron ara + chr3L 12591674 intron ara + chr3L 12591714 intron ara + chr3L_5_12590001 chr3L_12590001 RAL-208 1231 chr3L 12611010 12611024 chr3L 12611256 12611270 4 246 2.0 4.5 3.2 1.0 260 chr3L 12611010 intron caup + chr3L 12611140 intron caup + chr3L 12611270 intron caup + chr3L_4_12610001 chr3L_12610001 RAL-208 1232 chr3L 12626173 12626187 chr3L 12626282 12626296 8 109 1.5 0.0 0.8 4.4 123 chr3L 12626173 intergenic not near genes chr3L 12626234 intergenic not near genes chr3L 12626296 intergenic not near genes chr3L_8_12625001 chr3L_12625001 RAL-208 1233 chr3L 12636155 12636173 chr3L 12636229 12636250 7 77 2.0 3.0 2.5 2.0 95 chr3L 12636155 intron CR32111 + chr3L 12636202 intron CR32111 + chr3L 12636250 intron CR32111 + chr3L_7_12635001 chr3L_12635001 RAL-208 1234 chr3L 12647950 12647976 chr3L 12648026 12648052 9 76 3.0 2.5 2.8 2.4 102 chr3L 12647950 5` UTR CR32111 + chr3L 12648001 5` UTR CR32111 + chr3L 12648052 5` UTR CR32111 + chr3L_9_12645001 chr3L_12645001 RAL-208 1235 chr3L 12666927 12666951 chr3L 12667039 12667063 15 112 2.5 0.0 1.2 6.8 136 chr3L 12666927 intergenic not near genes chr3L 12666995 intergenic not near genes chr3L 12667063 intergenic not near genes chr3L_15_12665001 chr3L_12665001 RAL-208 1236 chr3L 12801979 12802011 chr3L 12802055 12802087 7 76 0.5 3.5 2.0 2.3 108 chr3L 12801979 intron Atg1 - chr3L 12802033 intron Atg1 - chr3L 12802087 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-208 1237 chr3L 12871624 12871630 chr3L 12872094 12872101 5 471 6.0 1.5 3.8 1.0 477 chr3L 12871624 intergenic not near genes chr3L 12871862 intergenic not near genes chr3L 12872101 intergenic not near genes chr3L_5_12870001 chr3L_12870001 RAL-208 1238 chr3L 12874929 12874962 chr3L 12877221 12877254 jockey 14 2292 0.0 3.5 1.8 5.0 2325 chr3L 12874929 intergenic not near genes chr3L 12876092 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_14_12875001 chr3L_12875001 RAL-208 1239 chr3L 12894800 12894813 chr3L 12894878 12894891 5 78 4.0 4.0 4.0 1.0 91 chr3L 12894800 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894891 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-208 1240 chr3L 12896236 12896246 chr3L 12896312 12896322 5 77 4.0 1.0 2.5 1.4 86 chr3L 12896236 intergenic not near genes chr3L 12896279 intergenic not near genes chr3L 12896322 intergenic not near genes chr3L_5_12895001 chr3L_12895001 RAL-208 1241 chr3L 12919274 12919299 chr3L 12924747 12924772 Rt1c 10 5473 3.5 2.0 2.8 2.6 5498 chr3L 12919274 intergenic not near genes chr3L 12922023 intergenic not near genes chr3L 12924772 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-208 1242 chr3L 12929731 12929742 chr3L 12930047 12930058 10 316 1.0 4.5 2.8 2.6 327 chr3L 12929731 intergenic not near genes chr3L 12929894 intergenic not near genes chr3L 12930058 intergenic not near genes chr3L_10_12925001 chr3L_12925001 RAL-208 1243 chr3L 12957794 12957817 chr3L 12962276 12962299 copia 6 4482 8.0 8.5 8.2 0.7 4505 chr3L 12957794 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-208 1244 chr3L 12978762 12978774 chr3L 12978841 12978853 5 79 2.5 0.0 1.2 2.3 91 chr3L 12978762 intergenic not near genes chr3L 12978808 intergenic not near genes chr3L 12978853 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-208 1245 chr3L 13007695 13007946 chr3L 13007774 13008045 20 85 2.0 3.0 2.5 5.7 350 chr3L 13007695 exon CG11263 + chr3L 13007870 3` UTR CG11263 + chr3L 13008045 intergenic CG11263 +,CG14117 + chr3L_20_13005001 chr3L_13005001 RAL-208 1246 chr3L 13095818 13095830 chr3L 13095906 13095918 10 88 6.0 0.0 3.0 2.5 100 chr3L 13095818 intergenic not near genes chr3L 13095868 intergenic not near genes chr3L 13095918 intergenic not near genes chr3L_10_13095001 chr3L_13095001 RAL-208 1247 chr3L 13142154 13142174 chr3L 13142266 13142287 10 113 1.0 1.5 1.2 4.5 133 chr3L 13142154 intergenic not near genes chr3L 13142220 intergenic not near genes chr3L 13142287 intergenic not near genes chr3L_10_13140001 chr3L_13140001 RAL-208 1248 chr3L 13223217 13223240 chr3L 13223292 13223317 9 76 0.0 6.5 3.2 2.1 100 chr3L 13223217 intergenic not near genes chr3L 13223267 intergenic not near genes chr3L 13223317 intergenic not near genes chr3L_9_13220001 chr3L_13220001 RAL-208 1249 chr3L 13296520 13296541 chr3L 13296611 13296632 7 91 4.0 5.5 4.8 1.2 112 chr3L 13296520 intergenic Sfp70A4 -,CR45253 + chr3L 13296576 3` UTR Sfp70A4 - chr3L 13296632 3` UTR Sfp70A4 - chr3L_7_13295001 chr3L_13295001 RAL-208 1250 chr3L 13338343 13338365 chr3L 13338458 13338480 10 115 3.0 0.5 1.8 3.6 137 chr3L 13338343 intergenic not near genes chr3L 13338412 intergenic not near genes chr3L 13338480 intergenic not near genes chr3L_10_13335001 chr3L_13335001 RAL-208 1251 chr3L 13373083 13373100 chr3L 13375141 13375158 10 2058 37.0 6.0 21.5 0.4 2075 chr3L 13373083 intergenic not near genes chr3L 13374120 intergenic not near genes chr3L 13375158 intergenic not near genes chr3L_10_13370001 chr3L_13370001 RAL-208 1252 chr3L 13400529 13400546 chr3L 13400605 13400622 4 76 5.0 0.5 2.8 1.1 93 chr3L 13400529 intron sens - chr3L 13400576 intron sens - chr3L 13400622 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-208 1253 chr3L 13452668 13452686 chr3L 13452756 13452774 5 88 0.5 1.5 1.0 2.5 106 chr3L 13452668 intron CG10738 + chr3L 13452721 intron CG10738 + chr3L 13452774 intron CG10738 + chr3L_5_13450001 chr3L_13450001 RAL-208 1254 chr3L 13455753 13455768 chr3L 13455908 13455923 7 155 4.5 3.0 3.8 1.5 170 chr3L 13455753 intron CG10738 + chr3L 13455838 intron CG10738 + chr3L 13455923 intron CG10738 + chr3L_7_13455001 chr3L_13455001 RAL-208 1255 chr3L 13525156 13525189 chr3L 13532951 13532985 roo 10 7795 4.0 5.5 4.8 1.7 7829 chr3L 13525156 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-208 1256 chr3L 13740037 13740052 chr3L 13740129 13740144 7 92 1.0 2.5 1.8 2.5 107 chr3L 13740037 intron bru-3 - chr3L 13740090 intron bru-3 - chr3L 13740144 intron bru-3 - chr3L_7_13740001 chr3L_13740001 RAL-208 1257 chr3L 13754167 13754192 chr3L 13754424 13754449 5 257 2.0 1.5 1.8 1.8 282 chr3L 13754167 intron bru-3 - chr3L 13754308 intron bru-3 - chr3L 13754449 intron bru-3 - chr3L_5_13750001 chr3L_13750001 RAL-208 1258 chr3L 13776128 13776154 chr3L 13776219 13776247 14 92 0.0 5.5 2.8 3.7 119 chr3L 13776128 intron bru-3 - chr3L 13776188 intron bru-3 - chr3L 13776247 intron bru-3 - chr3L_14_13775001 chr3L_13775001 RAL-208 1259 chr3L 13804543 13804578 chr3L 13822829 13822864 roo 8 18286 5.0 1.5 3.2 1.9 18321 chr3L 13804543 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822864 intergenic not near genes chr3L_8_13810001 chr3L_13810001 RAL-208 1260 chr3L 13893745 13893775 chr3L 13893829 13893859 10 84 4.5 1.5 3.0 2.5 114 chr3L 13893745 intron dysc - chr3L 13893802 intron dysc - chr3L 13893859 intron dysc - chr3L_10_13890001 chr3L_13890001 RAL-208 1261 chr3L 13901580 13901601 chr3L 13901657 13901678 11 77 5.5 3.5 4.5 2.0 98 chr3L 13901580 intron dysc - chr3L 13901629 intron dysc - chr3L 13901678 intron dysc - chr3L_11_13900001 chr3L_13900001 RAL-208 1262 chr3L 13920423 13920433 chr3L 13920503 13920513 7 80 2.5 6.0 4.2 1.3 90 chr3L 13920423 intron Rgl - chr3L 13920468 intron Rgl - chr3L 13920513 intron Rgl - chr3L_7_13920001 chr3L_13920001 RAL-208 1263 chr3L 14029562 14029585 chr3L 14029742 14029765 10 179 6.0 5.0 5.5 1.5 203 chr3L 14029562 intergenic endos -,ptip - chr3L 14029664 3` UTR endos - chr3L 14029765 3` UTR endos - chr3L_10_14025001 chr3L_14025001 RAL-208 1264 chr3L 14165186 14165205 chr3L 14165264 14165282 6 78 5.5 1.0 3.2 1.4 96 chr3L 14165186 intergenic not near genes chr3L 14165234 intergenic not near genes chr3L 14165282 intergenic not near genes chr3L_6_14165001 chr3L_14165001 RAL-208 1265 chr3L 14175356 14175374 chr3L 14175503 14175522 7 148 3.5 2.5 3.0 1.8 166 chr3L 14175356 intergenic D - chr3L 14175439 intergenic D - chr3L 14175522 intergenic D - chr3L_7_14175001 chr3L_14175001 RAL-208 1266 chr3L 14209300 14209323 chr3L 14209384 14209406 8 84 2.0 2.5 2.2 2.5 106 chr3L 14209300 intron nuf + chr3L 14209353 intron nuf + chr3L 14209406 intron nuf + chr3L_8_14205001 chr3L_14205001 RAL-208 1267 chr3L 14211452 14211459 chr3L 14211530 14211536 5 78 4.0 9.5 6.8 0.6 84 chr3L 14211452 intron nuf + chr3L 14211494 intron nuf + chr3L 14211536 intron nuf + chr3L_5_14210001 chr3L_14210001 RAL-208 1268 chr3L 14215067 14215084 chr3L 14215147 14215164 6 80 3.5 9.0 6.2 0.8 97 chr3L 14215067 intron nuf + chr3L 14215116 intron nuf + chr3L 14215164 intron nuf + chr3L_6_14215001 chr3L_14215001 RAL-208 1269 chr3L 14245568 14245590 chr3L 14245662 14245684 1360 13 94 5.5 1.5 3.5 2.9 116 chr3L 14245568 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_13_14245001 chr3L_14245001 RAL-208 1270 chr3L 14295982 14296009 chr3L 14296468 14296494 roo 9 486 3.5 5.0 4.2 1.7 512 chr3L 14295982 intron fz + chr3L 14296238 intron fz + chr3L 14296494 intron fz + chr3L_9_14295001 chr3L_14295001 RAL-208 1271 chr3L 14326962 14326999 chr3L 14327098 14327135 13 135 5.0 2.0 3.5 2.9 173 chr3L 14326962 intron fz + chr3L 14327048 intron fz + chr3L 14327135 intron fz + chr3L_13_14325001 chr3L_14325001 RAL-208 1272 chr3L 14514693 14514695 chr3L 22908066 22908067 Stalker2 5 8393372 22.5 24.5 23.5 0.2 8393374 chr3L 14514693 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_5_18710001 chr3L_18710001 RAL-208 1273 chr3L 14522105 14522128 chr3L 14522204 14522227 8 99 1.0 1.5 1.2 3.6 122 chr3L 14522105 intron bbg - chr3L 14522166 intron bbg - chr3L 14522227 intron bbg - chr3L_8_14520001 chr3L_14520001 RAL-208 1274 chr3L 14543649 14543653 chr3L 14543794 14543797 4 145 2.0 2.5 2.2 1.2 148 chr3L 14543649 intron CG9238 - chr3L 14543723 intron CG9238 - chr3L 14543797 intron CG9238 - chr3L_4_14540001 chr3L_14540001 RAL-208 1275 chr3L 14546625 14546817 chr3L 14546705 14546898 10 81 0.0 8.5 4.2 1.9 273 chr3L 14546625 intron CG9238 - chr3L 14546762 intron CG9238 - chr3L 14546898 intron CG9238 - chr3L_10_14545001 chr3L_14545001 RAL-208 1276 chr3L 14549563 14549596 chr3L 14549657 14549690 10 94 2.0 2.0 2.0 3.3 127 chr3L 14549563 intron CG9238 - chr3L 14549626 intron CG9238 - chr3L 14549690 intron CG9238 - chr3L_10_14545001 chr3L_14545001 RAL-208 1277 chr3L 14578435 14578440 chr3L 14578565 14578570 4 130 0.0 3.0 1.5 1.6 135 chr3L 14578435 intergenic not near genes chr3L 14578502 intergenic not near genes chr3L 14578570 intergenic not near genes chr3L_4_14575001 chr3L_14575001 RAL-208 1278 chr3L 14590343 14590374 chr3L 14590429 14590461 9 86 0.5 1.5 1.0 4.5 118 chr3L 14590343 intron HGTX - chr3L 14590402 intron HGTX - chr3L 14590461 intron HGTX - chr3L_9_14590001 chr3L_14590001 RAL-208 1279 chr3L 14615741 14615766 chr3L 14615817 14615842 10 76 0.5 3.0 1.8 3.6 101 chr3L 14615741 intron shd + chr3L 14615792 intron shd + chr3L 14615842 intron shd + chr3L_10_14615001 chr3L_14615001 RAL-208 1280 chr3L 14683321 14683339 chr3L 14683399 14683415 5 77 5.5 4.0 4.8 0.9 94 chr3L 14683321 intron ome + chr3L 14683368 intron ome + chr3L 14683415 intron ome + chr3L_5_14680001 chr3L_14680001 RAL-208 1281 chr3L 14684629 14684639 chr3L 14684721 14684731 9 92 4.0 3.0 3.5 2.0 102 chr3L 14684629 intron ome + chr3L 14684680 intron ome + chr3L 14684731 intron ome + chr3L_9_14680001 chr3L_14680001 RAL-208 1282 chr3L 14721191 14721205 chr3L 14723033 14723048 Rt1c 5 1842 6.5 3.0 4.8 0.9 1857 chr3L 14721191 intron ome + chr3L 14722120 intron ome + chr3L 14723048 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-208 1283 chr3L 14725622 14725630 chr3L 14728624 14728632 Doc 5 3002 0.0 1.0 0.5 3.3 3010 chr3L 14725622 intron ome + chr3L 14727127 intron ome + chr3L 14728632 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-208 1284 chr3L 14917669 14917690 chr3L 14917752 14917773 7 83 5.0 4.0 4.5 1.3 104 chr3L 14917669 intron DCX-EMAP + chr3L 14917721 intron DCX-EMAP + chr3L 14917773 intron DCX-EMAP + chr3L_7_14915001 chr3L_14915001 RAL-208 1285 chr3L 14922105 14922125 chr3L 14922210 14922233 7 108 5.0 0.5 2.8 1.8 128 chr3L 14922105 intron DCX-EMAP + chr3L 14922169 intron DCX-EMAP + chr3L 14922233 intron DCX-EMAP + chr3L_7_14920001 chr3L_14920001 RAL-208 1286 chr3L 14933445 14933450 chr3L 14933527 14933531 4 82 1.0 5.5 3.2 1.0 86 chr3L 14933445 intron DCX-EMAP + chr3L 14933488 intron DCX-EMAP + chr3L 14933531 intron DCX-EMAP + chr3L_4_14930001 chr3L_14930001 RAL-208 1287 chr3L 14970758 14970760 chr3L 14971067 14971070 F-element 4 310 3.0 0.0 1.5 1.6 312 chr3L 14970758 intergenic Tom + chr3L 14970914 intergenic not near genes chr3L 14971070 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-208 1288 chr3L 15063699 15063703 chr3L 22908066 22908067 5 7844367 15.0 24.5 19.8 0.2 7844368 chr3L 15063699 intron Sytbeta - chr3L 18985883 intergenic CG11619 -,CG14075 + chr3L 22908067 intergenic not near genes chr3L_5_18985001 chr3L_18985001 RAL-208 1289 chr3L 15085047 15085081 chr3L 15086213 15086247 1360 10 1166 1.5 2.0 1.8 3.6 1200 chr3L 15085047 intron cp309 - chr3L 15085647 intron cp309 - chr3L 15086247 intron cp309 - chr3L_10_15085001 chr3L_15085001 RAL-208 1290 chr3L 15153875 15153906 chr3L 15154060 15154090 28 184 21.5 37.5 29.5 0.9 215 chr3L 15153875 3` UTR FucTA + chr3L 15153982 3` UTR FucTA + chr3L 15154090 3` UTR FucTA + chr3L_28_15150001 chr3L_15150001 RAL-208 1291 chr3L 15193700 15193723 chr3L 15193869 15193890 9 169 4.5 3.0 3.8 1.9 190 chr3L 15193700 intergenic not near genes chr3L 15193795 intergenic not near genes chr3L 15193890 intergenic not near genes chr3L_9_15190001 chr3L_15190001 RAL-208 1292 chr3L 15209074 15209096 chr3L 15209160 15209179 12 86 4.0 3.5 3.8 2.5 105 chr3L 15209074 intergenic CG6888 + chr3L 15209126 intergenic not near genes chr3L 15209179 intergenic not near genes chr3L_12_15205001 chr3L_15205001 RAL-208 1293 chr3L 15219087 15219117 chr3L 15219230 15219260 8 143 2.0 4.0 3.0 2.0 173 chr3L 15219087 intergenic not near genes chr3L 15219174 intergenic not near genes chr3L 15219260 intergenic not near genes chr3L_8_15215001 chr3L_15215001 RAL-208 1294 chr3L 15261724 15261726 chr3L 22908066 22908066 4 7646342 17.5 24.5 21.0 0.2 7646342 chr3L 15261724 intergenic not near genes chr3L 19084895 intron Mkp3 - chr3L 22908066 intergenic not near genes chr3L_4_19080001 chr3L_19080001 RAL-208 1295 chr3L 15262972 15262996 chr3L 15263053 15263077 9 81 3.5 3.5 3.5 2.0 105 chr3L 15262972 intergenic not near genes chr3L 15263024 intergenic not near genes chr3L 15263077 intergenic not near genes chr3L_9_15260001 chr3L_15260001 RAL-208 1296 chr3L 15295766 15295797 chr3L 15298609 15298640 gypsy5 12 2843 4.0 2.0 3.0 3.0 2874 chr3L 15295766 intergenic not near genes chr3L 15297203 intergenic not near genes chr3L 15298640 intergenic Best4 + chr3L_12_15295001 chr3L_15295001 RAL-208 1297 chr3L 15348121 15348143 chr3L 15348278 15348301 6 158 2.5 6.0 4.2 1.2 180 chr3L 15348121 intergenic not near genes chr3L 15348211 intergenic not near genes chr3L 15348301 intergenic not near genes chr3L_6_15345001 chr3L_15345001 RAL-208 1298 chr3L 15380490 15380515 chr3L 15381614 15381638 7 1123 23.0 26.5 24.8 0.3 1148 chr3L 15380490 intergenic not near genes chr3L 15381064 intergenic not near genes chr3L 15381638 intergenic not near genes chr3L_7_15380001 chr3L_15380001 RAL-208 1299 chr3L 15384962 15384989 chr3L 15385090 15385117 24 128 4.0 7.0 5.5 3.7 155 chr3L 15384962 intergenic not near genes chr3L 15385040 intergenic not near genes chr3L 15385117 intergenic not near genes chr3L_24_15385001 chr3L_15385001 RAL-208 1300 chr3L 15406021 15406055 chr3L 15406102 15406138 11 82 0.5 3.5 2.0 3.7 117 chr3L 15406021 intergenic not near genes chr3L 15406080 intergenic not near genes chr3L 15406138 intergenic not near genes chr3L_11_15405001 chr3L_15405001 RAL-208 1301 chr3L 15423761 15423775 chr3L 15426605 15426619 opus 6 2844 3.0 3.0 3.0 1.5 2858 chr3L 15423761 intergenic not near genes chr3L 15425190 intergenic not near genes chr3L 15426619 intergenic not near genes chr3L_6_15425001 chr3L_15425001 RAL-208 1302 chr3L 15444661 15444683 chr3L 15444755 15444777 10 94 2.0 3.5 2.8 2.6 116 chr3L 15444661 intergenic not near genes chr3L 15444719 intergenic not near genes chr3L 15444777 intergenic not near genes chr3L_10_15440001 chr3L_15440001 RAL-208 1303 chr3L 15554921 15554950 chr3L 15556708 15556737 S-element 14 1787 3.0 2.0 2.5 4.0 1816 chr3L 15554921 intron AGO2 + chr3L 15555829 intron AGO2 + chr3L 15556737 intron AGO2 + chr3L_14_15555001 chr3L_15555001 RAL-208 1304 chr3L 15591631 15591640 chr3L 15591786 15591795 7 155 9.5 6.0 7.8 0.8 164 chr3L 15591631 intron RhoGAP71E + chr3L 15591713 intron RhoGAP71E + chr3L 15591795 intron RhoGAP71E + chr3L_7_15590001 chr3L_15590001 RAL-208 1305 chr3L 15756880 15756911 chr3L 15756963 15756994 7 82 2.5 0.0 1.2 3.2 114 chr3L 15756880 intergenic not near genes chr3L 15756937 intergenic not near genes chr3L 15756994 intergenic not near genes chr3L_7_15755001 chr3L_15755001 RAL-208 1306 chr3L 15778515 15778522 chr3L 15778666 15778673 4 151 3.5 1.5 2.5 1.1 158 chr3L 15778515 intergenic not near genes chr3L 15778594 intergenic not near genes chr3L 15778673 intergenic not near genes chr3L_4_15775001 chr3L_15775001 RAL-208 1307 chr3L 15783814 15783838 chr3L 15783987 15784011 10 172 4.0 2.0 3.0 2.5 197 chr3L 15783814 intergenic not near genes chr3L 15783912 intergenic not near genes chr3L 15784011 intergenic not near genes chr3L_10_15780001 chr3L_15780001 RAL-208 1308 chr3L 15784566 15784595 chr3L 15784663 15784692 10 97 5.0 1.0 3.0 2.5 126 chr3L 15784566 intergenic not near genes chr3L 15784629 intergenic not near genes chr3L 15784692 intergenic not near genes chr3L_10_15780001 chr3L_15780001 RAL-208 1309 chr3L 15871592 15871608 chr3L 15871676 15871692 4 84 3.5 5.0 4.2 0.8 100 chr3L 15871592 intron pHCl - chr3L 15871642 intron pHCl - chr3L 15871692 intron pHCl - chr3L_4_15870001 chr3L_15870001 RAL-208 1310 chr3L 15887280 15887292 chr3L 15887356 15887368 5 76 3.5 2.5 3.0 1.2 88 chr3L 15887280 intron pHCl - chr3L 15887324 intron pHCl - chr3L 15887368 intron pHCl - chr3L_5_15885001 chr3L_15885001 RAL-208 1311 chr3L 15899225 15899257 chr3L 15899792 15899823 jockey 11 567 1.5 4.0 2.8 2.9 598 chr3L 15899225 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899823 intergenic sff - chr3L_11_15895001 chr3L_15895001 RAL-208 1312 chr3L 15929195 15929222 chr3L 15938342 15938368 roo 5 9147 2.0 6.5 4.2 1.0 9173 chr3L 15929195 intron Pka-C3 - chr3L 15933782 intron Pka-C3 - chr3L 15938368 intron Pka-C3 - chr3L_5_15930001 chr3L_15930001 RAL-208 1313 chr3L 15939851 15939881 chr3L 15939927 15939956 16 76 5.0 9.0 7.0 2.0 105 chr3L 15939851 intron Pka-C3 - chr3L 15939904 intron Pka-C3 - chr3L 15939956 intron Pka-C3 - chr3L_16_15935001 chr3L_15935001 RAL-208 1314 chr3L 15946502 15946513 chr3L 15946588 15946597 4 85 9.5 0.0 4.8 0.7 95 chr3L 15946502 intron Pka-C3 - chr3L 15946550 intron Pka-C3 - chr3L 15946597 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-208 1315 chr3L 15948751 15948770 chr3L 15948832 15948853 5 82 3.5 2.0 2.8 1.3 102 chr3L 15948751 intron Pka-C3 - chr3L 15948802 intron Pka-C3 - chr3L 15948853 intron Pka-C3 - chr3L_5_15945001 chr3L_15945001 RAL-208 1316 chr3L 15991498 15991536 chr3L 15991592 15991630 15 94 2.0 3.0 2.5 4.3 132 chr3L 15991498 3` UTR Hip14 + chr3L 15991564 3` UTR Hip14 + chr3L 15991630 3` UTR Hip14 + chr3L_15_15990001 chr3L_15990001 RAL-208 1317 chr3L 16040391 16040410 chr3L 16040485 16040504 6 94 2.5 2.0 2.2 1.9 113 chr3L 16040391 intron th - chr3L 16040448 intron th - chr3L 16040504 intron th - chr3L_6_16040001 chr3L_16040001 RAL-208 1318 chr3L 16066181 16066181 chr3L 26882300 26882300 5 10816119 15.0 4.0 9.5 0.5 10816119 chr3L 16066181 intron Mbs + chr3L 21474240 3` UTR croc - chr3L 26882300 intergenic not near genes chr3L_5_21470001 chr3L_21470001 RAL-208 1319 chr3L 16074613 16074625 chr3L 16074806 16074818 4 192 5.0 3.5 4.2 0.8 205 chr3L 16074613 intron Mbs + chr3L 16074716 intron Mbs + chr3L 16074818 intron Mbs + chr3L_4_16070001 chr3L_16070001 RAL-208 1320 chr3L 16145772 16145789 chr3L 16145879 16145896 6 107 0.0 4.5 2.2 1.9 124 chr3L 16145772 intron CG5151 - chr3L 16145834 intron CG5151 - chr3L 16145896 intron CG5151 - chr3L_6_16145001 chr3L_16145001 RAL-208 1321 chr3L 16158803 16158836 chr3L 16158888 16158921 17 85 0.0 2.0 1.0 8.5 118 chr3L 16158803 intron CG5151 - chr3L 16158862 intron CG5151 - chr3L 16158921 intron CG5151 - chr3L_17_16155001 chr3L_16155001 RAL-208 1322 chr3L 16184103 16184134 chr3L 16188922 16188953 X-element 10 4819 1.0 1.0 1.0 5.0 4850 chr3L 16184103 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188953 intergenic not near genes chr3L_10_16185001 chr3L_16185001 RAL-208 1323 chr3L 16212809 16212838 chr3L 16212900 16212928 7 91 1.5 0.5 1.0 3.5 119 chr3L 16212809 intergenic CG13073 - chr3L 16212868 intergenic CG13073 - chr3L 16212928 intergenic CG13073 - chr3L_7_16210001 chr3L_16210001 RAL-208 1324 chr3L 16220143 16220164 chr3L 16220261 16220281 6 118 0.0 1.5 0.8 3.3 138 chr3L 16220143 intergenic not near genes chr3L 16220212 intergenic not near genes chr3L 16220281 intergenic not near genes chr3L_6_16220001 chr3L_16220001 RAL-208 1325 chr3L 16235003 16235037 chr3L 16235092 16235126 12 88 2.5 6.5 4.5 2.2 123 chr3L 16235003 intron l(3)72Dp + chr3L 16235064 intron l(3)72Dp + chr3L 16235126 intron l(3)72Dp + chr3L_12_16235001 chr3L_16235001 RAL-208 1326 chr3L 16240714 16240720 chr3L 16240863 16240869 7 149 1.5 2.0 1.8 2.5 155 chr3L 16240714 intergenic not near genes chr3L 16240792 intergenic not near genes chr3L 16240869 intergenic not near genes chr3L_7_16240001 chr3L_16240001 RAL-208 1327 chr3L 16278060 16278062 chr3L 22908066 22908066 4 6630005 20.0 24.5 22.2 0.2 6630006 chr3L 16278060 3` UTR CG13065 + chr3L 19593063 exon ash1 - chr3L 22908066 intergenic not near genes chr3L_4_19590001 chr3L_19590001 RAL-208 1328 chr3L 16304867 16304890 chr3L 16304944 16304968 5 78 1.0 3.0 2.0 1.7 101 chr3L 16304867 intergenic CG43249 +,CG13043 - chr3L 16304918 intergenic CG43249 +,CG13043 - chr3L 16304968 intergenic CG13043 -,CG43249 + chr3L_5_16300001 chr3L_16300001 RAL-208 1329 chr3L 16340263 16340280 chr3L 16340387 16340404 7 124 4.5 3.5 4.0 1.4 141 chr3L 16340263 intron CG4998 + chr3L 16340334 intron CG4998 + chr3L 16340404 intron CG4998 + chr3L_7_16340001 chr3L_16340001 RAL-208 1330 chr3L 16370356 16370385 chr3L 16370859 16370886 9 503 1.0 7.0 4.0 1.8 530 chr3L 16370356 exon CG18814 + chr3L 16370621 exon CG18814 + chr3L 16370886 3` UTR CG18814 + chr3L_9_16370001 chr3L_16370001 RAL-208 1331 chr3L 16387982 16388015 chr3L 16388068 16388098 6 85 3.0 2.5 2.8 1.6 116 chr3L 16387982 exon RAF2 + chr3L 16388040 exon RAF2 + chr3L 16388098 exon RAF2 + chr3L_6_16385001 chr3L_16385001 RAL-208 1332 chr3L 16443848 16443875 chr3L 16446187 16446215 Doc 9 2340 1.5 3.0 2.2 2.8 2367 chr3L 16443848 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_9_16445001 chr3L_16445001 RAL-208 1333 chr3L 16450019 16450043 chr3L 16450104 16450128 5 85 0.0 1.0 0.5 3.3 109 chr3L 16450019 intron,intron CG33158 +,dsx-c73A - chr3L 16450074 intron,intron CG33158 +,dsx-c73A - chr3L 16450128 intron,intron CG33158 +,dsx-c73A - chr3L_5_16450001 chr3L_16450001 RAL-208 1334 chr3L 16493974 16493998 chr3L 16494491 16494515 jockey 11 517 6.5 1.5 4.0 2.2 541 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494515 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 RAL-208 1335 chr3L 16521812 16521839 chr3L 16521904 16521930 13 93 1.5 4.0 2.8 3.4 118 chr3L 16521812 intron CG43373 - chr3L 16521871 intron CG43373 - chr3L 16521930 intron CG43373 - chr3L_13_16520001 chr3L_16520001 RAL-208 1336 chr3L 16540053 16540079 chr3L 16540141 16540167 16 88 4.0 6.0 5.0 2.7 114 chr3L 16540053 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540167 intron CG43373 - chr3L_16_16540001 chr3L_16540001 RAL-208 1337 chr3L 16616508 16616542 chr3L 16621836 16621870 297 19 5328 5.0 0.5 2.8 5.0 5362 chr3L 16616508 3` UTR Abl - chr3L 16619189 3` UTR Abl - chr3L 16621870 3` UTR Abl - chr3L_19_16615001 chr3L_16615001 RAL-208 1338 chr3L 16659110 16659132 chr3L 16659188 16659210 11 78 1.5 3.0 2.2 3.4 100 chr3L 16659110 intron Baldspot - chr3L 16659160 intron Baldspot - chr3L 16659210 intron Baldspot - chr3L_11_16655001 chr3L_16655001 RAL-208 1339 chr3L 16786975 16786999 chr3L 16787051 16787075 8 76 0.0 4.5 2.2 2.5 100 chr3L 16786975 intergenic Int6 - chr3L 16787025 intergenic Int6 - chr3L 16787075 intergenic Int6 -,CG9674 - chr3L_8_16785001 chr3L_16785001 RAL-208 1340 chr3L 16845026 16845044 chr3L 16845139 16845157 12 113 2.5 4.5 3.5 2.7 131 chr3L 16845026 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845157 intergenic CG9669 -,CG9715 + chr3L_12_16845001 chr3L_16845001 RAL-208 1341 chr3L 16869576 16869602 chr3L 16869659 16869685 9 83 5.5 4.5 5.0 1.5 109 chr3L 16869576 intron Lmpt + chr3L 16869630 intron Lmpt + chr3L 16869685 intron Lmpt + chr3L_9_16865001 chr3L_16865001 RAL-208 1342 chr3L 16899885 16899913 chr3L 16899962 16899990 11 77 1.0 2.5 1.8 3.9 105 chr3L 16899885 intron Lmpt + chr3L 16899938 intron Lmpt + chr3L 16899990 intron Lmpt + chr3L_11_16895001 chr3L_16895001 RAL-208 1343 chr3L 16900896 16900925 chr3L 16900981 16901011 5 85 1.0 1.5 1.2 2.3 115 chr3L 16900896 intron Lmpt + chr3L 16900954 intron Lmpt + chr3L 16901011 intron Lmpt + chr3L_5_16900001 chr3L_16900001 RAL-208 1344 chr3L 16941405 16941427 chr3L 16941506 16941528 11 101 3.0 0.0 1.5 4.4 123 chr3L 16941405 intron Cpr73D - chr3L 16941466 intron Cpr73D - chr3L 16941528 intron Cpr73D - chr3L_11_16940001 chr3L_16940001 RAL-208 1345 chr3L 16945732 16945751 chr3L 16954884 16954904 roo 11 9153 4.5 0.0 2.2 3.4 9172 chr3L 16945732 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954904 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-208 1346 chr3L 16986854 16986855 chr3L 22908066 22908067 5 5921212 24.5 24.5 24.5 0.2 5921213 chr3L 16986854 intron Exn + chr3L 19947460 intron Ac76E + chr3L 22908067 intergenic not near genes chr3L_5_19945001 chr3L_19945001 RAL-208 1347 chr3L 16989503 16989536 chr3L 16989584 16989615 7 80 2.5 3.0 2.8 1.8 112 chr3L 16989503 intron Exn + chr3L 16989559 intron Exn + chr3L 16989615 intron Exn + chr3L_7_16985001 chr3L_16985001 RAL-208 1348 chr3L 17004390 17004421 chr3L 17004510 17004538 8 120 4.5 2.5 3.5 1.8 148 chr3L 17004390 intron CG3764 - chr3L 17004464 intron CG3764 - chr3L 17004538 intron CG3764 - chr3L_8_17000001 chr3L_17000001 RAL-208 1349 chr3L 17034938 17034967 chr3L 17035126 17035155 G2 7 188 1.0 1.0 1.0 3.5 217 chr3L 17034938 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035155 intergenic not near genes chr3L_7_17035001 chr3L_17035001 RAL-208 1350 chr3L 17052592 17052619 chr3L 17052695 17052722 13 103 4.0 5.0 4.5 2.4 130 chr3L 17052592 intron rogdi + chr3L 17052657 intron rogdi + chr3L 17052722 exon rogdi + chr3L_13_17050001 chr3L_17050001 RAL-208 1351 chr3L 17085003 17085036 chr3L 17094152 17094185 roo 16 9149 2.5 6.5 4.5 2.9 9182 chr3L 17085003 intron Rbp6 - chr3L 17089594 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_16_17085001 chr3L_17085001 RAL-208 1352 chr3L 17199152 17199162 chr3L 17199263 17199273 5 111 1.5 4.0 2.8 1.3 121 chr3L 17199152 intron Rbp6 - chr3L 17199212 intron Rbp6 - chr3L 17199273 intron Rbp6 - chr3L_5_17195001 chr3L_17195001 RAL-208 1353 chr3L 17217251 17217269 chr3L 17217331 17217349 6 80 7.5 3.5 5.5 0.9 98 chr3L 17217251 intron Rbp6 - chr3L 17217300 intron Rbp6 - chr3L 17217349 intron Rbp6 - chr3L_6_17215001 chr3L_17215001 RAL-208 1354 chr3L 17272246 17272265 chr3L 17272379 17272398 5 133 1.0 4.5 2.8 1.3 152 chr3L 17272246 intergenic not near genes chr3L 17272322 intergenic not near genes chr3L 17272398 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-208 1355 chr3L 17332521 17332535 chr3L 17332686 17332702 6 166 5.5 0.0 2.8 1.6 181 chr3L 17332521 intergenic not near genes chr3L 17332612 intergenic not near genes chr3L 17332702 intergenic not near genes chr3L_6_17330001 chr3L_17330001 RAL-208 1356 chr3L 17367435 17367457 chr3L 17367529 17367551 10 94 5.5 1.5 3.5 2.2 116 chr3L 17367435 intergenic CR45688 +,Cad74A - chr3L 17367493 intergenic CR45688 +,Cad74A - chr3L 17367551 intergenic CR45688 +,Cad74A - chr3L_10_17365001 chr3L_17365001 RAL-208 1357 chr3L 17498103 17498113 chr3L 17498180 17498190 6 77 1.5 1.0 1.2 2.7 87 chr3L 17498103 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498190 intron Oatp74D + chr3L_6_17495001 chr3L_17495001 RAL-208 1358 chr3L 17510745 17510764 chr3L 17510829 17510848 6 84 5.5 1.0 3.2 1.4 103 chr3L 17510745 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-208 1359 chr3L 17516978 17517013 chr3L 17524536 17524568 412 15 7557 3.5 1.0 2.2 4.7 7590 chr3L 17516978 intron CG7564 + chr3L 17520773 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_15_17520001 chr3L_17520001 RAL-208 1360 chr3L 17535816 17535847 chr3L 17535930 17535960 13 113 1.0 9.0 5.0 2.2 144 chr3L 17535816 intron Nedd4 + chr3L 17535888 intron Nedd4 + chr3L 17535960 intron Nedd4 + chr3L_13_17535001 chr3L_17535001 RAL-208 1361 chr3L 17569638 17569659 chr3L 17569737 17569759 7 100 1.5 2.5 2.0 2.3 121 chr3L 17569638 intron Eip74EF - chr3L 17569698 intron Eip74EF - chr3L 17569759 intron Eip74EF - chr3L_7_17565001 chr3L_17565001 RAL-208 1362 chr3L 17632724 17632754 chr3L 17632837 17632867 10 113 2.0 3.0 2.5 2.9 143 chr3L 17632724 intergenic CR44567 -,CR44566 + chr3L 17632796 intergenic CR44567 - chr3L 17632867 intergenic CR44567 - chr3L_10_17630001 chr3L_17630001 RAL-208 1363 chr3L 17636102 17636127 chr3L 17636250 17636275 12 147 2.5 4.0 3.2 2.9 173 chr3L 17636102 intron CG7497 + chr3L 17636188 intron CG7497 + chr3L 17636275 intron CG7497 + chr3L_12_17635001 chr3L_17635001 RAL-208 1364 chr3L 17700524 17700536 chr3L 17700627 17700639 5 103 0.0 2.0 1.0 2.5 115 chr3L 17700524 intron Ccn + chr3L 17700582 intron Ccn + chr3L 17700639 intron Ccn + chr3L_5_17700001 chr3L_17700001 RAL-208 1365 chr3L 17730852 17730879 chr3L 17738182 17738209 mdg1 12 7330 5.5 3.5 4.5 2.2 7357 chr3L 17730852 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738209 intron Ccn + chr3L_12_17730001 chr3L_17730001 RAL-208 1366 chr3L 17789862 17789874 chr3L 17789938 17789950 8 76 1.0 3.0 2.0 2.7 88 chr3L 17789862 intergenic not near genes chr3L 17789906 intergenic not near genes chr3L 17789950 intergenic not near genes chr3L_8_17785001 chr3L_17785001 RAL-208 1367 chr3L 17799811 17799834 chr3L 17801598 17801621 S-element 9 1787 3.5 2.0 2.8 2.4 1810 chr3L 17799811 intron NUCB1 - chr3L 17800716 intron NUCB1 - chr3L 17801621 intron NUCB1 - chr3L_9_17800001 chr3L_17800001 RAL-208 1368 chr3L 17836217 17836221 chr3L 17836292 17836298 4 76 5.0 3.0 4.0 0.8 81 chr3L 17836217 intron Grd + chr3L 17836258 intron Grd + chr3L 17836298 intron Grd + chr3L_4_17835001 chr3L_17835001 RAL-208 1369 chr3L 18047707 18047738 chr3L 18056763 18056795 roo 7 9057 3.0 2.5 2.8 1.8 9088 chr3L 18047707 intron Eip75B - chr3L 18052251 intron Eip75B - chr3L 18056795 intron Eip75B - chr3L_7_18050001 chr3L_18050001 RAL-208 1370 chr3L 18075251 18075254 chr3L 18075515 18075519 4 265 4.5 2.0 3.2 1.0 268 chr3L 18075251 intergenic not near genes chr3L 18075385 intergenic not near genes chr3L 18075519 intergenic not near genes chr3L_4_18075001 chr3L_18075001 RAL-208 1371 chr3L 18089631 18089646 chr3L 18089722 18089739 7 92 1.0 0.0 0.5 4.7 108 chr3L 18089631 exon CG13698 - chr3L 18089685 intron CG13698 - chr3L 18089739 intron CG13698 - chr3L_7_18085001 chr3L_18085001 RAL-208 1372 chr3L 18092407 18092422 chr3L 18092532 18092547 7 125 2.5 2.0 2.2 2.2 140 chr3L 18092407 intron CG13698 - chr3L 18092477 intron CG13698 - chr3L 18092547 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-208 1373 chr3L 18107619 18107639 chr3L 18107712 18107732 7 93 3.0 3.5 3.2 1.7 113 chr3L 18107619 intergenic mRpS26 +,CG5147 - chr3L 18107676 intergenic CG5147 -,mRpS26 + chr3L 18107732 intergenic CG5147 -,mRpS26 + chr3L_7_18105001 chr3L_18105001 RAL-208 1374 chr3L 18118211 18118238 chr3L 18118289 18118316 9 78 4.0 1.5 2.8 2.4 105 chr3L 18118211 3` UTR,intron CG32195 +,CG7341 + chr3L 18118264 3` UTR,intron CG32195 +,CG7341 + chr3L 18118316 3` UTR,intron CG32195 +,CG7341 + chr3L_9_18115001 chr3L_18115001 RAL-208 1375 chr3L 18198930 18198931 chr3L 24821493 24821494 4 6622563 0.0 6.5 3.2 1.0 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-208 1376 chr3L 18203592 18203606 chr3L 18203687 18203701 5 95 3.5 0.0 1.8 1.8 109 chr3L 18203592 3` UTR CG7320 + chr3L 18203646 intergenic CG7320 + chr3L 18203701 intergenic CG7320 + chr3L_5_18200001 chr3L_18200001 RAL-208 1377 chr3L 18258866 18258884 chr3L 18258992 18259010 5 126 3.0 2.5 2.8 1.3 144 chr3L 18258866 intergenic not near genes chr3L 18258938 intergenic not near genes chr3L 18259010 intergenic not near genes chr3L_5_18255001 chr3L_18255001 RAL-208 1378 chr3L 18262471 18262481 chr3L 18262554 18262564 6 83 5.5 2.0 3.8 1.2 93 chr3L 18262471 intergenic not near genes chr3L 18262518 intergenic not near genes chr3L 18262564 intergenic not near genes chr3L_6_18260001 chr3L_18260001 RAL-208 1379 chr3L 18267459 18267483 chr3L 18267542 18267566 6 83 3.0 2.5 2.8 1.6 107 chr3L 18267459 intergenic not near genes chr3L 18267512 intergenic not near genes chr3L 18267566 intergenic not near genes chr3L_6_18265001 chr3L_18265001 RAL-208 1380 chr3L 18267838 18267998 chr3L 18267915 18268075 19 77 1.5 2.0 1.8 6.8 237 chr3L 18267838 intergenic not near genes chr3L 18267956 intergenic not near genes chr3L 18268075 intergenic not near genes chr3L_19_18265001 chr3L_18265001 RAL-208 1381 chr3L 18279782 18279806 chr3L 18279858 18279882 8 76 3.0 1.5 2.2 2.5 100 chr3L 18279782 intergenic not near genes chr3L 18279832 intergenic not near genes chr3L 18279882 intergenic not near genes chr3L_8_18275001 chr3L_18275001 RAL-208 1382 chr3L 18306887 18306914 chr3L 18306968 18306995 13 80 1.0 1.0 1.0 6.5 108 chr3L 18306887 intergenic not near genes chr3L 18306941 intergenic not near genes chr3L 18306995 intergenic not near genes chr3L_13_18305001 chr3L_18305001 RAL-208 1383 chr3L 18359593 18359629 chr3L 18359685 18359721 13 92 0.0 4.0 2.0 4.3 128 chr3L 18359593 intergenic not near genes chr3L 18359657 intergenic not near genes chr3L 18359721 intergenic not near genes chr3L_13_18355001 chr3L_18355001 RAL-208 1384 chr3L 18436060 18436083 chr3L 18436158 18436181 6 98 2.0 2.0 2.0 2.0 121 chr3L 18436060 intergenic not near genes chr3L 18436120 intergenic not near genes chr3L 18436181 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-208 1385 chr3L 18437347 18437371 chr3L 18437435 18437459 10 88 2.0 4.0 3.0 2.5 112 chr3L 18437347 intergenic not near genes chr3L 18437403 intergenic not near genes chr3L 18437459 intergenic not near genes chr3L_10_18435001 chr3L_18435001 RAL-208 1386 chr3L 18456277 18456292 chr3L 18456365 18456380 5 88 10.5 1.5 6.0 0.7 103 chr3L 18456277 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456380 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-208 1387 chr3L 18464494 18464515 chr3L 18464580 18464601 12 86 3.5 4.0 3.8 2.5 107 chr3L 18464494 intergenic not near genes chr3L 18464548 intergenic not near genes chr3L 18464601 intergenic not near genes chr3L_12_18460001 chr3L_18460001 RAL-208 1388 chr3L 18506130 18506156 chr3L 18509593 18509619 F-element 7 3463 6.0 3.0 4.5 1.3 3489 chr3L 18506130 intergenic not near genes chr3L 18507874 intergenic not near genes chr3L 18509619 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-208 1389 chr3L 18528625 18528660 chr3L 18537786 18537821 roo 16 9161 4.0 5.0 4.5 2.9 9196 chr3L 18528625 intergenic not near genes chr3L 18533223 intergenic not near genes chr3L 18537821 intergenic not near genes chr3L_16_18530001 chr3L_18530001 RAL-208 1390 chr3L 18546703 18546732 chr3L 18546797 18546826 4 94 2.0 3.5 2.8 1.1 123 chr3L 18546703 intergenic not near genes chr3L 18546764 intergenic not near genes chr3L 18546826 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-208 1391 chr3L 18567027 18567052 chr3L 18567113 18567138 13 85 2.5 1.5 2.0 4.3 111 chr3L 18567027 intron AstC-R1 + chr3L 18567082 intron AstC-R1 + chr3L 18567138 intron AstC-R1 + chr3L_13_18565001 chr3L_18565001 RAL-208 1392 chr3L 18593949 18593975 chr3L 18595929 18595955 Doc 19 1979 3.5 1.0 2.2 5.9 2006 chr3L 18593949 intergenic term - chr3L 18594952 intergenic not near genes chr3L 18595955 intergenic CR45389 + chr3L_19_18590001 chr3L_18590001 RAL-208 1393 chr3L 18656188 18656218 chr3L 18656273 18656303 13 85 3.5 5.0 4.2 2.5 115 chr3L 18656188 intron MYPT-75D + chr3L 18656246 intron MYPT-75D + chr3L 18656303 intron MYPT-75D + chr3L_13_18655001 chr3L_18655001 RAL-208 1394 chr3L 18692690 18692706 chr3L 18692775 18692788 8 84 4.0 0.5 2.2 2.5 98 chr3L 18692690 intergenic not near genes chr3L 18692739 intergenic not near genes chr3L 18692788 intergenic not near genes chr3L_8_18690001 chr3L_18690001 RAL-208 1395 chr3L 18710759 18710792 chr3L 18718711 18718744 Stalker2 6 7952 2.0 3.0 2.5 1.7 7985 chr3L 18710759 intergenic not near genes chr3L 18714752 intergenic not near genes chr3L 18718744 intergenic not near genes chr3L_6_18710001 chr3L_18710001 RAL-208 1396 chr3L 18721785 18721806 chr3L 18721874 18721897 12 91 1.0 4.5 2.8 3.2 112 chr3L 18721785 intergenic CG12477 - chr3L 18721841 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_12_18720001 chr3L_18720001 RAL-208 1397 chr3L 18753548 18753561 chr3L 18753629 18753642 8 82 2.5 1.0 1.8 2.9 94 chr3L 18753548 intron ftz-f1 - chr3L 18753595 intron ftz-f1 - chr3L 18753642 intron ftz-f1 - chr3L_8_18750001 chr3L_18750001 RAL-208 1398 chr3L 18772410 18772438 chr3L 18781091 18781119 roo 4 8681 3.0 3.0 3.0 1.0 8709 chr3L 18772410 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781119 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-208 1399 chr3L 18784393 18784403 chr3L 18784482 18784492 8 89 2.5 3.5 3.0 2.0 99 chr3L 18784393 intron ftz-f1 - chr3L 18784442 intron ftz-f1 - chr3L 18784492 intron ftz-f1 - chr3L_8_18780001 chr3L_18780001 RAL-208 1400 chr3L 18843868 18843885 chr3L 18843965 18843983 9 97 4.0 0.5 2.2 2.8 115 chr3L 18843868 intron Indy - chr3L 18843926 intron Indy - chr3L 18843983 intron Indy - chr3L_9_18840001 chr3L_18840001 RAL-208 1401 chr3L 18888435 18888465 chr3L 18888517 18888547 13 82 14.5 15.5 15.0 0.8 112 chr3L 18888435 intron CG3961 - chr3L 18888491 intron CG3961 - chr3L 18888547 intron CG3961 - chr3L_13_18885001 chr3L_18885001 RAL-208 1402 chr3L 18886820 18886838 chr3L 18891875 18891893 8 5055 16.5 22.5 19.5 0.4 5073 chr3L 18886820 intron CG3961 - chr3L 18889356 intron CG3961 - chr3L 18891893 intergenic NijB + chr3L_8_18885001 chr3L_18885001 RAL-208 1403 chr3L 18933630 18933659 chr3L 18933724 18933752 5 93 4.0 1.0 2.5 1.4 122 chr3L 18933630 intron CG32204 - chr3L 18933691 intron CG32204 - chr3L 18933752 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-208 1404 chr3L 18969551 18969566 chr3L 18969627 18969642 6 76 4.5 1.5 3.0 1.5 91 chr3L 18969551 intergenic not near genes chr3L 18969596 intergenic not near genes chr3L 18969642 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-208 1405 chr3L 19008856 19008870 chr3L 19009191 19009208 jockey 8 337 3.0 2.5 2.8 2.1 352 chr3L 19008856 intron nkd - chr3L 19009032 intron nkd - chr3L 19009208 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-208 1406 chr3L 19094939 19094962 chr3L 19095059 19095081 11 120 2.0 3.5 2.8 2.9 142 chr3L 19094939 3` UTR CG11577 - chr3L 19095010 3` UTR CG11577 - chr3L 19095081 3` UTR CG11577 - chr3L_11_19095001 chr3L_19095001 RAL-208 1407 chr3L 19101716 19101742 chr3L 19102088 19102113 5 372 1.5 5.0 3.2 1.2 397 chr3L 19101716 intergenic not near genes chr3L 19101914 intergenic not near genes chr3L 19102113 intergenic not near genes chr3L_5_19100001 chr3L_19100001 RAL-208 1408 chr3L 19117041 19117068 chr3L 19124488 19124515 mdg1 14 7447 5.0 5.0 5.0 2.3 7474 chr3L 19117041 intron CG14082 - chr3L 19120778 intron CG14082 - chr3L 19124515 intron CG14082 - chr3L_14_19120001 chr3L_19120001 RAL-208 1409 chr3L 19173716 19173744 chr3L 19173867 19173895 8 150 1.0 1.5 1.2 3.6 179 chr3L 19173716 intron fz2 - chr3L 19173806 intron fz2 - chr3L 19173895 intron fz2 - chr3L_8_19170001 chr3L_19170001 RAL-208 1410 chr3L 19182395 19182419 chr3L 19182476 19182500 7 81 1.5 5.5 3.5 1.6 105 chr3L 19182395 intron fz2 - chr3L 19182448 intron fz2 - chr3L 19182500 intron fz2 - chr3L_7_19180001 chr3L_19180001 RAL-208 1411 chr3L 19208074 19208086 chr3L 19209448 19209459 Doc 6 1374 2.5 6.5 4.5 1.1 1385 chr3L 19208074 intron fz2 - chr3L 19208766 intron fz2 - chr3L 19209459 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-208 1412 chr3L 19210121 19210141 chr3L 19210217 19210237 12 96 0.0 5.0 2.5 3.4 116 chr3L 19210121 intron fz2 - chr3L 19210179 intron fz2 - chr3L 19210237 intron fz2 - chr3L_12_19210001 chr3L_19210001 RAL-208 1413 chr3L 19220632 19220633 chr3L 22908066 22908067 4 3687434 9.5 24.5 17.0 0.2 3687435 chr3L 19220632 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-208 1414 chr3L 19238725 19238741 chr3L 19238832 19238848 9 107 3.0 2.5 2.8 2.4 123 chr3L 19238725 intergenic not near genes chr3L 19238786 intergenic not near genes chr3L 19238848 intergenic not near genes chr3L_9_19235001 chr3L_19235001 RAL-208 1415 chr3L 19244114 19244134 chr3L 19244192 19244212 6 78 4.5 3.5 4.0 1.2 98 chr3L 19244114 intergenic not near genes chr3L 19244163 intergenic not near genes chr3L 19244212 intergenic not near genes chr3L_6_19240001 chr3L_19240001 RAL-208 1416 chr3L 19335745 19335774 chr3L 19335832 19335861 13 87 5.5 1.0 3.2 3.1 116 chr3L 19335745 intron pip - chr3L 19335803 intron pip - chr3L 19335861 intron pip - chr3L_13_19335001 chr3L_19335001 RAL-208 1417 chr3L 19337000 19337010 chr3L 19337086 19337091 7 85 1.5 3.0 2.2 2.2 91 chr3L 19337000 intron pip - chr3L 19337046 intron pip - chr3L 19337091 intron pip - chr3L_7_19335001 chr3L_19335001 RAL-208 1418 chr3L 19346874 19346884 chr3L 19346953 19346964 7 79 0.0 3.5 1.8 2.5 90 chr3L 19346874 intron CG32206 - chr3L 19346919 intron CG32206 - chr3L 19346964 intron CG32206 - chr3L_7_19345001 chr3L_19345001 RAL-208 1419 chr3L 19365920 19365930 chr3L 19366015 19366027 4 96 0.0 4.5 2.2 1.2 107 chr3L 19365920 intron CG32206 - chr3L 19365974 intron CG32206 - chr3L 19366027 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-208 1420 chr3L 19439282 19439290 chr3L 19439368 19439376 5 86 0.0 5.5 2.8 1.3 94 chr3L 19439282 intergenic not near genes chr3L 19439329 intergenic not near genes chr3L 19439376 intergenic not near genes chr3L_5_19435001 chr3L_19435001 RAL-208 1421 chr3L 19488488 19488491 chr3L 19488570 19488571 4 82 8.5 1.5 5.0 0.7 83 chr3L 19488488 intergenic pncr009:3L -,CG32212 + chr3L 19488530 intergenic pncr009:3L -,CG32212 + chr3L 19488571 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-208 1422 chr3L 19517325 19517333 chr3L 19517467 19517475 6 141 2.5 1.5 2.0 2.0 150 chr3L 19517325 intergenic Cpr76Ba - chr3L 19517400 intergenic Cpr76Ba - chr3L 19517475 intergenic Cpr76Ba - chr3L_6_19515001 chr3L_19515001 RAL-208 1423 chr3L 19527931 19527955 chr3L 19528010 19528034 10 79 1.0 3.0 2.0 3.3 103 chr3L 19527931 intergenic not near genes chr3L 19527982 intergenic not near genes chr3L 19528034 intergenic not near genes chr3L_10_19525001 chr3L_19525001 RAL-208 1424 chr3L 19531894 19531924 chr3L 19531993 19532021 7 99 5.5 4.5 5.0 1.2 127 chr3L 19531894 intergenic not near genes chr3L 19531958 intergenic not near genes chr3L 19532021 intergenic not near genes chr3L_7_19530001 chr3L_19530001 RAL-208 1425 chr3L 19544241 19544269 chr3L 19544317 19544345 5 76 2.0 5.0 3.5 1.1 104 chr3L 19544241 intergenic CG9279 -,l(3)76BDr - chr3L 19544293 intergenic l(3)76BDr -,CG9279 - chr3L 19544345 3` UTR l(3)76BDr - chr3L_5_19540001 chr3L_19540001 RAL-208 1426 chr3L 19848503 19848534 chr3L 19857692 19857724 roo 12 9190 3.0 2.0 2.5 3.4 9221 chr3L 19848503 intron Papss + chr3L 19853114 intron Papss + chr3L 19857724 intron Papss + chr3L_12_19850001 chr3L_19850001 RAL-208 1427 chr3L 19861828 19861836 chr3L 19863616 19863624 S-element 6 1788 1.5 2.0 1.8 2.1 1796 chr3L 19861828 5` UTR CR45433 + chr3L 19862726 intergenic not near genes chr3L 19863624 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-208 1428 chr3L 19981212 19981234 chr3L 19981291 19981314 10 79 3.0 2.0 2.5 2.9 102 chr3L 19981212 intergenic CG17732 + chr3L 19981263 intergenic CG17732 + chr3L 19981314 intergenic CG17732 + chr3L_10_19980001 chr3L_19980001 RAL-208 1429 chr3L 20081744 20081761 chr3L 20081827 20081844 7 83 1.5 4.5 3.0 1.8 100 chr3L 20081744 intron sNPF-R - chr3L 20081794 intron sNPF-R - chr3L 20081844 intron sNPF-R - chr3L_7_20080001 chr3L_20080001 RAL-208 1430 chr3L 20096087 20096100 chr3L 20096191 20096203 4 102 4.5 1.0 2.8 1.1 116 chr3L 20096087 intergenic not near genes chr3L 20096145 intergenic not near genes chr3L 20096203 intergenic not near genes chr3L_4_20095001 chr3L_20095001 RAL-208 1431 chr3L 20113476 20113507 chr3L 20113571 20113602 9 95 1.0 1.0 1.0 4.5 126 chr3L 20113476 intergenic not near genes chr3L 20113539 intergenic not near genes chr3L 20113602 intergenic not near genes chr3L_9_20110001 chr3L_20110001 RAL-208 1432 chr3L 20113657 20113689 chr3L 20122914 20122946 roo 9 9257 1.5 1.0 1.2 4.1 9289 chr3L 20113657 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122946 intergenic not near genes chr3L_9_20115001 chr3L_20115001 RAL-208 1433 chr3L 20143079 20143113 chr3L 20143159 20143193 18 80 4.0 3.0 3.5 4.0 114 chr3L 20143079 intergenic not near genes chr3L 20143136 intergenic not near genes chr3L 20143193 intergenic not near genes chr3L_18_20140001 chr3L_20140001 RAL-208 1434 chr3L 13194261 13194263 chr3L 20221592 20221594 4 7027331 9.5 10.0 9.8 0.4 7027333 chr3L 13194261 intergenic not near genes chr3L 16707928 intron,intron Lasp -,CG43954 - chr3L 20221594 intergenic CG17145 + chr3L_4_16705001 chr3L_16705001 RAL-208 1435 chr3L 20257339 20257349 chr3L 20258460 20258470 pogo 7 1121 2.5 2.5 2.5 2.0 1131 chr3L 20257339 intron rdgC + chr3L 20257904 intron rdgC + chr3L 20258470 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-208 1436 chr3L 20262797 20262829 chr3L 20262909 20262941 14 112 3.0 5.0 4.0 2.8 144 chr3L 20262797 exon rdgC + chr3L 20262869 intron rdgC + chr3L 20262941 intron rdgC + chr3L_14_20260001 chr3L_20260001 RAL-208 1437 chr3L 20283678 20283703 chr3L 20283762 20283787 15 84 2.0 5.0 3.5 3.3 109 chr3L 20283678 intron gogo - chr3L 20283732 intron gogo - chr3L 20283787 intron gogo - chr3L_15_20280001 chr3L_20280001 RAL-208 1438 chr3L 20386940 20386972 chr3L 20387042 20387074 8 102 1.5 5.5 3.5 1.8 134 chr3L 20386940 intron fbl + chr3L 20387007 intron fbl + chr3L 20387074 intron fbl + chr3L_8_20385001 chr3L_20385001 RAL-208 1439 chr3L 20476753 20476785 chr3L 20484352 20484384 springer 13 7599 3.5 3.0 3.2 3.1 7631 chr3L 20476753 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_13_20480001 chr3L_20480001 RAL-208 1440 chr3L 20490763 20490772 chr3L 20490907 20490917 7 145 1.0 0.0 0.5 4.7 154 chr3L 20490763 intron ZnT77C - chr3L 20490840 intron ZnT77C - chr3L 20490917 intron ZnT77C - chr3L_7_20490001 chr3L_20490001 RAL-208 1441 chr3L 20590064 20590095 chr3L 20590603 20590630 412 15 538 2.5 3.5 3.0 3.8 566 chr3L 20590064 intergenic not near genes chr3L 20590347 intergenic not near genes chr3L 20590630 intergenic not near genes chr3L_15_20590001 chr3L_20590001 RAL-208 1442 chr3L 20741943 20741973 chr3L 20742027 20742058 13 85 1.0 2.5 1.8 4.6 115 chr3L 20741943 intron CG13252 + chr3L 20742000 intron CG13252 + chr3L 20742058 intron CG13252 + chr3L_13_20740001 chr3L_20740001 RAL-208 1443 chr3L 20913757 20913782 chr3L 20913839 20913864 7 82 2.0 7.5 4.8 1.2 107 chr3L 20913757 intergenic CR43930 - chr3L 20913810 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_7_20910001 chr3L_20910001 RAL-208 1444 chr3L 20990151 20990163 chr3L 20990451 20990463 4 300 3.0 2.0 2.5 1.1 312 chr3L 20990151 intergenic not near genes chr3L 20990307 intergenic not near genes chr3L 20990463 intergenic not near genes chr3L_4_20990001 chr3L_20990001 RAL-208 1445 chr3L 21014926 21014932 chr3L 21023405 21023413 Tirant 6 8481 1.5 3.0 2.2 1.9 8487 chr3L 21014926 intron skd - chr3L 21019170 intron skd - chr3L 21023413 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-208 1446 chr3L 21082210 21082238 chr3L 21082288 21082316 12 77 0.5 2.5 1.5 4.8 106 chr3L 21082210 intron ko - chr3L 21082263 intron ko - chr3L 21082316 intron ko - chr3L_12_21080001 chr3L_21080001 RAL-208 1447 chr3L 21130575 21130594 chr3L 21130769 21130788 6 194 4.0 3.0 3.5 1.3 213 chr3L 21130575 intron ko - chr3L 21130682 intron ko - chr3L 21130788 intron ko - chr3L_6_21130001 chr3L_21130001 RAL-208 1448 chr3L 21151864 21151892 chr3L 21156946 21156976 flea 5 5083 4.5 1.5 3.0 1.2 5112 chr3L 21151864 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156976 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-208 1449 chr3L 21306149 21306179 chr3L 21315308 21315337 roo 9 9159 2.0 7.0 4.5 1.6 9188 chr3L 21306149 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310743 intron Pc - chr3L 21315337 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-208 1450 chr3L 21361727 21361748 chr3L 21362681 21362702 G2 5 954 6.5 6.5 6.5 0.7 975 chr3L 21361727 intergenic CG32440 + chr3L 21362214 intergenic not near genes chr3L 21362702 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-208 1451 chr3L 21372721 21372747 chr3L 21379229 21379255 McClintock 4 6508 4.0 2.5 3.2 1.0 6534 chr3L 21372721 intergenic not near genes chr3L 21375988 intergenic not near genes chr3L 21379255 intergenic not near genes chr3L_4_21375001 chr3L_21375001 RAL-208 1452 chr3L 21498834 21498870 chr3L 21500470 21500506 1360 10 1636 2.5 1.0 1.8 3.6 1672 chr3L 21498834 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500506 intron Glg1 - chr3L_10_21495001 chr3L_21495001 RAL-208 1453 chr3L 21639197 21639227 chr3L 21639276 21639306 7 79 3.5 2.5 3.0 1.8 109 chr3L 21639197 intergenic CG32444 +,CG32445 + chr3L 21639252 intergenic CG32445 +,CG32444 + chr3L 21639306 intergenic CG32445 +,CG32444 + chr3L_7_21635001 chr3L_21635001 RAL-208 1454 chr3L 21749316 21749347 chr3L 21754475 21754507 Doc 6 5159 4.5 3.0 3.8 1.2 5191 chr3L 21749316 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754507 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-208 1455 chr3L 21836726 21836761 chr3L 21836812 21836847 10 86 4.5 4.5 4.5 1.8 121 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836786 3` UTR P5CDh1 - chr3L 21836847 3` UTR P5CDh1 - chr3L_10_21835001 chr3L_21835001 RAL-208 1456 chr3L 21852258 21852279 chr3L 21852351 21852372 9 92 0.5 2.0 1.2 4.1 114 chr3L 21852258 intron mub + chr3L 21852315 intron mub + chr3L 21852372 intron mub + chr3L_9_21850001 chr3L_21850001 RAL-208 1457 chr3L 21872427 21872446 chr3L 21872506 21872525 10 79 4.5 3.0 3.8 2.1 98 chr3L 21872427 intron mub + chr3L 21872476 intron mub + chr3L 21872525 intron mub + chr3L_10_21870001 chr3L_21870001 RAL-208 1458 chr3L 21975681 21975711 chr3L 21975915 21975942 9 234 3.0 3.5 3.2 2.1 261 chr3L 21975681 intron CG7470 + chr3L 21975812 intron CG7470 + chr3L 21975942 intron CG7470 + chr3L_9_21975001 chr3L_21975001 RAL-208 1459 chr3L 21994442 21994471 chr3L 21994523 21994552 11 81 2.0 3.5 2.8 2.9 110 chr3L 21994442 intergenic not near genes chr3L 21994497 intergenic not near genes chr3L 21994552 intergenic not near genes chr3L_11_21990001 chr3L_21990001 RAL-208 1460 chr3L 22008847 22008880 chr3L 22008924 22008957 11 77 2.5 2.5 2.5 3.1 110 chr3L 22008847 intergenic not near genes chr3L 22008902 intergenic not near genes chr3L 22008957 intergenic not near genes chr3L_11_22005001 chr3L_22005001 RAL-208 1461 chr3L 22023225 22023247 chr3L 22023316 22023339 10 92 1.5 2.5 2.0 3.3 114 chr3L 22023225 intergenic not near genes chr3L 22023282 intergenic not near genes chr3L 22023339 intergenic not near genes chr3L_10_22020001 chr3L_22020001 RAL-208 1462 chr3L 22038402 22038433 chr3L 22038591 22038622 8 189 4.5 1.0 2.8 2.1 220 chr3L 22038402 intron Oct-TyrR + chr3L 22038512 intron Oct-TyrR + chr3L 22038622 intron Oct-TyrR + chr3L_8_22035001 chr3L_22035001 RAL-208 1463 chr3L 22099674 22099704 chr3L 22105860 22105890 3S18 9 6186 9.5 1.5 5.5 1.4 6216 chr3L 22099674 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-208 1464 chr3L 22130500 22130523 chr3L 22130646 22130669 7 146 1.0 2.0 1.5 2.8 169 chr3L 22130500 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130669 intergenic not near genes chr3L_7_22130001 chr3L_22130001 RAL-208 1465 chr3L 22137520 22137554 chr3L 22137597 22137631 11 77 6.5 2.0 4.2 2.1 111 chr3L 22137520 intron olf413 + chr3L 22137576 intron olf413 + chr3L 22137631 intron olf413 + chr3L_11_22135001 chr3L_22135001 RAL-208 1466 chr3L 22314887 22314910 chr3L 22315101 22315124 6 214 3.5 2.5 3.0 1.5 237 chr3L 22314887 intron Ten-m - chr3L 22315006 intron Ten-m - chr3L 22315124 intron Ten-m - chr3L_6_22315001 chr3L_22315001 RAL-208 1467 chr3L 22447196 22447231 chr3L 22447287 22447322 17 91 3.0 3.0 3.0 4.2 126 chr3L 22447196 intergenic not near genes chr3L 22447259 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_17_22445001 chr3L_22445001 RAL-208 1468 chr3L 22555769 22555797 chr3L 22563239 22563267 blood 5 7469 2.5 1.5 2.0 1.7 7498 chr3L 22555769 intergenic not near genes chr3L 22559518 intergenic not near genes chr3L 22563267 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-208 1469 chr3L 22577616 22577650 chr3L 22582404 22582437 Doc 5 4788 5.5 5.0 5.2 0.8 4821 chr3L 22577616 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-208 1470 chr3L 22590784 22590812 chr3L 22590883 22590911 6 99 0.5 2.5 1.5 2.4 127 chr3L 22590784 intron CG14459 - chr3L 22590848 intron CG14459 - chr3L 22590911 intron CG14459 - chr3L_6_22590001 chr3L_22590001 RAL-208 1471 chr3L 22617190 22617221 chr3L 22624642 22624673 blood 11 7452 2.0 1.5 1.8 3.9 7483 chr3L 22617190 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_11_22620001 chr3L_22620001 RAL-208 1472 chr3L 22663200 22663218 chr3L 22663300 22663318 5 100 1.5 3.0 2.2 1.6 118 chr3L 22663200 intergenic not near genes chr3L 22663259 intergenic not near genes chr3L 22663318 intergenic not near genes chr3L_5_22660001 chr3L_22660001 RAL-208 1473 chr3L 22761396 22761418 chr3L 22766830 22766852 Ivk 13 5434 2.0 2.5 2.2 4.1 5456 chr3L 22761396 intron SPoCk + chr3L 22764124 intron SPoCk + chr3L 22766852 intron SPoCk + chr3L_13_22760001 chr3L_22760001 RAL-208 1474 chr3L 22786066 22786082 chr3L 22788503 22788519 9 2437 16.0 29.5 22.8 0.4 2453 chr3L 22786066 3` UTR SPoCk + chr3L 22787292 3` UTR SPoCk + chr3L 22788519 5` UTR CG14448 + chr3L_9_22785001 chr3L_22785001 RAL-208 1475 chr3L 22865982 22866015 chr3L 22867113 22867148 Doc 9 1133 1.0 3.5 2.2 2.8 1166 chr3L 22865982 intron CG33170 + chr3L 22866565 intron CG33170 + chr3L 22867148 intron CG33170 + chr3L_9_22865001 chr3L_22865001 RAL-208 1476 chr3L 22897223 22897226 chr3L 22897306 22897308 4 83 2.0 11.5 6.8 0.5 85 chr3L 22897223 intergenic not near genes chr3L 22897266 intergenic not near genes chr3L 22897308 intergenic not near genes chr3L_4_22895001 chr3L_22895001 RAL-208 1477 chr3L 19220633 19220638 chr3L 22908066 22908066 10 3687432 9.5 24.5 17.0 0.6 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_10_21060001 chr3L_21060001 RAL-208 1478 chr3L 22936688 22936719 chr3L 22938153 22938185 13 1464 28.5 37.0 32.8 0.4 1497 chr3L 22936688 intergenic not near genes chr3L 22937436 intergenic not near genes chr3L 22938185 intergenic not near genes chr3L_13_22935001 chr3L_22935001 RAL-208 1479 chr3L 22980581 22980595 chr3L 22980666 22980678 8 84 1.5 2.0 1.8 2.9 97 chr3L 22980581 intergenic not near genes chr3L 22980630 intergenic not near genes chr3L 22980678 intergenic not near genes chr3L_8_22980001 chr3L_22980001 RAL-208 1480 chr3L 22989862 22989895 chr3L 22996836 22996869 297 9 6974 2.0 6.0 4.0 1.8 7007 chr3L 22989862 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996869 intergenic not near genes chr3L_9_22990001 chr3L_22990001 RAL-208 1481 chr3L 23042225 23042259 chr3L 23048978 23049010 gypsy6 9 6752 3.5 5.5 4.5 1.6 6785 chr3L 23042225 intergenic not near genes chr3L 23045618 intergenic not near genes chr3L 23049010 intergenic not near genes chr3L_9_23045001 chr3L_23045001 RAL-208 1482 chr3L 23251956 23251976 chr3L 23252071 23252093 8 117 3.5 2.5 3.0 2.0 137 chr3L 23251956 intron nAChRalpha4 + chr3L 23252024 intron nAChRalpha4 + chr3L 23252093 intron nAChRalpha4 + chr3L_8_23250001 chr3L_23250001 RAL-208 1483 chr3L 23288943 23288967 chr3L 23289071 23289095 11 128 1.0 1.5 1.2 5.0 152 chr3L 23288943 intergenic not near genes chr3L 23289019 intergenic not near genes chr3L 23289095 intergenic not near genes chr3L_11_23285001 chr3L_23285001 RAL-208 1484 chr3L 23449705 23449729 chr3L 23449782 23449806 6 77 2.5 2.0 2.2 1.9 101 chr3L 23449705 intergenic not near genes chr3L 23449756 intergenic not near genes chr3L 23449806 intergenic not near genes chr3L_6_23445001 chr3L_23445001 RAL-208 1485 chr3L 22908066 22908067 chr3L 23657065 23657065 6 748999 23.5 13.5 18.5 0.3 748999 chr3L 22908066 intergenic not near genes chr3L 23282566 intron nAChRalpha4 + chr3L 23657065 intron AGO3 + chr3L_6_23280001 chr3L_23280001 RAL-208 1486 chr3L 23816695 23816705 chr3L 23816776 23816786 12 81 2.5 4.5 3.5 2.7 91 chr3L 23816695 intergenic not near genes chr3L 23816740 intergenic not near genes chr3L 23816786 intergenic not near genes chr3L_12_23815001 chr3L_23815001 RAL-208 1487 chr3L 23854298 23854313 chr3L 23854396 23854411 11 97 4.0 2.0 3.0 2.8 113 chr3L 23854298 intron CG40470 - chr3L 23854354 intron CG40470 - chr3L 23854411 intron CG40470 - chr3L_11_23850001 chr3L_23850001 RAL-208 1488 chr3L 23868801 23868804 chr3L 23869152 23869158 4 352 20.0 15.5 17.8 0.2 357 chr3L 23868801 intron CG40470 - chr3L 23868980 intron CG40470 - chr3L 23869158 intron CG40470 - chr3L_4_23865001 chr3L_23865001 RAL-208 1489 chr3L 24012419 24012432 chr3L 24020760 24020773 roo 4 8341 5.0 4.5 4.8 0.7 8354 chr3L 24012419 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020773 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-208 1490 chr3L 24021280 24021302 chr3L 24022437 24022458 1360 4 1156 3.5 0.5 2.0 1.3 1178 chr3L 24021280 intergenic not near genes chr3L 24021869 intergenic not near genes chr3L 24022458 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-208 1491 chr3L 24036798 24036813 chr3L 24036889 24036904 4 90 3.0 1.5 2.2 1.2 106 chr3L 24036798 intergenic not near genes chr3L 24036851 intergenic not near genes chr3L 24036904 intergenic not near genes chr3L_4_24035001 chr3L_24035001 RAL-208 1492 chr3L 24168793 24168813 chr3L 24176121 24176139 ZAM 10 7327 0.5 3.5 2.0 3.3 7346 chr3L 24168793 intron Snap25 + chr3L 24172466 intron Snap25 + chr3L 24176139 intron Snap25 + chr3L_10_24170001 chr3L_24170001 RAL-208 1493 chr3L 24289944 24289966 chr3L 24290021 24290043 13 76 3.5 1.0 2.2 4.1 99 chr3L 24289944 intron Snap25 + chr3L 24289994 intron Snap25 + chr3L 24290043 intron Snap25 + chr3L_13_24285001 chr3L_24285001 RAL-208 1494 chr3L 24324295 24324311 chr3L 24324389 24324406 5 95 2.0 0.5 1.2 2.3 111 chr3L 24324295 intergenic not near genes chr3L 24324350 intergenic not near genes chr3L 24324406 intergenic nvd + chr3L_5_24320001 chr3L_24320001 RAL-208 1495 chr3L 24351961 24351991 chr3L 24352046 24352076 5 85 1.5 0.0 0.8 2.8 115 chr3L 24351961 intron nvd + chr3L 24352018 intron nvd + chr3L 24352076 intron nvd + chr3L_5_24350001 chr3L_24350001 RAL-208 1496 chr3L 24363249 24363265 chr3L 24363327 24363343 9 78 3.0 6.0 4.5 1.6 94 chr3L 24363249 intron nvd + chr3L 24363296 intron nvd + chr3L 24363343 intron nvd + chr3L_9_24360001 chr3L_24360001 RAL-208 1497 chr3L 25464026 25464098 chr3L 25464113 25464196 16 89 2.0 2.0 2.0 5.3 170 chr3L 25464026 intergenic not near genes chr3L 25464111 intergenic not near genes chr3L 25464196 intergenic not near genes chr3L_16_25460001 chr3L_25460001 RAL-208 1498 chr3L 25513580 25513603 chr3L 25513659 25513682 12 79 3.0 1.5 2.2 3.8 102 chr3L 25513580 intron CG41343 - chr3L 25513631 intron CG41343 - chr3L 25513682 intron CG41343 - chr3L_12_25510001 chr3L_25510001 RAL-208 1499 chr3L 25627819 25627827 chr3L 25627903 25627913 5 86 0.5 2.0 1.2 2.3 94 chr3L 25627819 intron CG41343 - chr3L 25627866 intron CG41343 - chr3L 25627913 intron CG41343 - chr3L_5_25625001 chr3L_25625001 RAL-208 1500 chr3L 25628499 25628520 chr3L 25633270 25633291 F-element 10 4771 5.5 2.0 3.8 2.1 4792 chr3L 25628499 intron CG41343 - chr3L 25630895 intron CG41343 - chr3L 25633291 intron CG41343 - chr3L_10_25630001 chr3L_25630001 RAL-208 1501 chr3L 26009437 26009450 chr3L 26009528 26009540 6 91 1.5 4.0 2.8 1.6 103 chr3L 26009437 intron CG40178 - chr3L 26009488 intron CG40178 - chr3L 26009540 intron CG40178 - chr3L_6_26005001 chr3L_26005001 RAL-208 1502 chr3L 27114689 27114717 chr3L 27115018 27115044 14 328 1.0 2.5 1.8 5.0 355 chr3L 27114689 intergenic not near genes chr3L 27114866 intergenic not near genes chr3L 27115044 intergenic not near genes chr3L_14_27110001 chr3L_27110001 RAL-208 1503 chr3L 27167951 27167970 chr3L 27168071 27168090 8 120 4.5 4.5 4.5 1.5 139 chr3L 27167951 intergenic not near genes chr3L 27168020 intergenic not near genes chr3L 27168090 intergenic not near genes chr3L_8_27165001 chr3L_27165001 RAL-208 1504 chr3L 27368877 27368904 chr3L 27369422 27369449 6 545 5.0 3.5 4.2 1.2 572 chr3L 27368877 intron Dbp80 + chr3L 27369163 intron Dbp80 + chr3L 27369449 intron Dbp80 + chr3L_6_27365001 chr3L_27365001 RAL-208 1505 chr3L 27390694 27390710 chr3L 27390773 27390789 8 79 24.0 33.0 28.5 0.3 95 chr3L 27390694 intron Dbp80 + chr3L 27390742 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_8_27390001 chr3L_27390001 RAL-208 1506 chr3L 27727641 27727650 chr3L 27728748 27728757 G-element 4 1107 7.0 1.0 4.0 0.8 1116 chr3L 27727641 intergenic not near genes chr3L 27728199 intergenic not near genes chr3L 27728757 intergenic not near genes chr3L_4_27725001 chr3L_27725001 RAL-208 1507 chr3L 27887624 27887628 chr3L 27887728 27887732 4 104 30.5 8.0 19.2 0.2 108 chr3L 27887624 intergenic not near genes chr3L 27887678 intergenic not near genes chr3L 27887732 intergenic not near genes chr3L_4_27885001 chr3L_27885001 RAL-208 1508 chr3L 27980697 27980726 chr3L 27985495 27985524 Doc 5 4797 0.5 2.0 1.2 2.3 4827 chr3L 27980697 intron CG17514 - chr3L 27983110 intron CG17514 - chr3L 27985524 intron CG17514 - chr3L_5_27980001 chr3L_27980001 RAL-208 1509 chr3R 1446691 1446692 chr3R 2999472 2999473 invader2 6 1552781 9.5 3.5 6.5 0.8 1552782 chr3R 1446691 intron CG40155 + chr3R 2223082 intergenic not near genes chr3R 2999473 intron CG42618 - chr3R_6_2220001 chr3R_2220001 RAL-208 1510 chr3R 2534134 2534160 chr3R 2541703 2541729 9 7568 9.0 10.5 9.8 0.8 7595 chr3R 2534134 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541729 intergenic not near genes chr3R_9_2535001 chr3R_2535001 RAL-208 1511 chr3R 2610459 2610492 chr3R 2610536 2610568 10 77 0.5 2.0 1.2 4.5 109 chr3R 2610459 intron CG41056 - chr3R 2610514 intron CG41056 - chr3R 2610568 intron CG41056 - chr3R_10_2610001 chr3R_2610001 RAL-208 1512 chr3R 3267250 3267272 chr3R 3267431 3267453 5 181 12.5 11.5 12.0 0.4 203 chr3R 3267250 intergenic not near genes chr3R 3267352 intergenic not near genes chr3R 3267453 intergenic not near genes chr3R_5_3265001 chr3R_3265001 RAL-208 1513 chr3R 3752748 3752753 chr3R 3752829 3752836 6 83 2.5 3.5 3.0 1.5 88 chr3R 3752748 intergenic CG41128 + chr3R 3752792 intergenic CG41128 + chr3R 3752836 intergenic CG41128 + chr3R_6_3750001 chr3R_3750001 RAL-208 1514 chr3R 4063814 4063831 chr3R 4069092 4069109 5 5279 3.5 13.0 8.2 0.5 5295 chr3R 4063814 intergenic not near genes chr3R 4066462 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-208 1515 chr3R 4206093 4206096 chr3R 4211667 4211671 mdg3 4 5575 2.0 5.0 3.5 0.9 5578 chr3R 4206093 intron CG14636 - chr3R 4208882 intron CG14636 - chr3R 4211671 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-208 1516 chr3R 4241065 4241075 chr3R 4241143 4241153 4 78 5.0 2.0 3.5 0.9 88 chr3R 4241065 3` UTR CG14642 - chr3R 4241109 3` UTR CG14642 - chr3R 4241153 intron CG14642 - chr3R_4_4240001 chr3R_4240001 RAL-208 1517 chr3R 4255491 4255497 chr3R 4258234 4258240 4 2744 10.0 32.5 21.2 0.2 2749 chr3R 4255491 exon TwdlV + chr3R 4256866 intergenic Or82a + chr3R 4258240 exon Or82a + chr3R_4_4255001 chr3R_4255001 RAL-208 1518 chr3R 4366763 4366791 chr3R 4375146 4375174 roo 12 8383 1.5 4.0 2.8 3.2 8411 chr3R 4366763 3` UTR CG1090 + chr3R 4370968 intergenic not near genes chr3R 4375174 5` UTR CR44922 + chr3R_12_4370001 chr3R_4370001 RAL-208 1519 chr3R 4376563 4376576 chr3R 4377012 4377025 4 449 2.5 1.5 2.0 1.3 462 chr3R 4376563 5` UTR CR44922 + chr3R 4376794 5` UTR CR44922 + chr3R 4377025 5` UTR CR44922 + chr3R_4_4375001 chr3R_4375001 RAL-208 1520 chr3R 4408409 4408436 chr3R 4412712 4412740 Juan 9 4303 6.0 5.0 5.5 1.4 4331 chr3R 4408409 intron CG32944 - chr3R 4410574 intron CG32944 - chr3R 4412740 intron CG32944 - chr3R_9_4410001 chr3R_4410001 RAL-208 1521 chr3R 4501975 4502006 chr3R 4502053 4502083 13 78 2.5 2.0 2.2 4.1 108 chr3R 4501975 intron CG34357 - chr3R 4502029 intron CG34357 - chr3R 4502083 intron CG34357 - chr3R_13_4500001 chr3R_4500001 RAL-208 1522 chr3R 4593470 4593502 chr3R 4593552 4593584 15 82 1.0 4.0 2.5 4.3 114 chr3R 4593470 intergenic not near genes chr3R 4593527 intergenic not near genes chr3R 4593584 intergenic not near genes chr3R_15_4590001 chr3R_4590001 RAL-208 1523 chr3R 4609548 4609581 chr3R 4610712 4610745 1360 7 1164 2.5 4.0 3.2 1.7 1197 chr3R 4609548 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-208 1524 chr3R 4636607 4636627 chr3R 4637027 4637047 INE-1 6 420 2.0 4.0 3.0 1.5 440 chr3R 4636607 intergenic not near genes chr3R 4636827 intergenic not near genes chr3R 4637047 intergenic not near genes chr3R_6_4635001 chr3R_4635001 RAL-208 1525 chr3R 4678468 4678492 chr3R 4678819 4678843 14 351 0.0 2.0 1.0 7.0 375 chr3R 4678468 intron CG43427 + chr3R 4678656 intron CG43427 + chr3R 4678843 intron CG43427 + chr3R_14_4675001 chr3R_4675001 RAL-208 1526 chr3R 4753239 4753265 chr3R 4757542 4757568 F-element 14 4303 3.5 2.5 3.0 3.5 4329 chr3R 4753239 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757568 intron,exon atms +,CG44098 - chr3R_14_4755001 chr3R_4755001 RAL-208 1527 chr3R 4759724 4759746 chr3R 4761221 4761243 hopper2 6 1497 8.0 3.5 5.8 0.9 1519 chr3R 4759724 intron,intron atms +,CG44098 - chr3R 4760484 intron,intron atms +,CG44098 - chr3R 4761243 intron,intron atms +,CG44098 - chr3R_6_4760001 chr3R_4760001 RAL-208 1528 chr3R 4769166 4769191 chr3R 4769244 4769269 5 78 3.0 1.5 2.2 1.6 103 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769218 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-208 1529 chr3R 4786701 4786709 chr3R 4786793 4786801 9 92 2.5 2.0 2.2 2.8 100 chr3R 4786701 3` UTR ctrip - chr3R 4786751 3` UTR ctrip - chr3R 4786801 3` UTR ctrip - chr3R_9_4785001 chr3R_4785001 RAL-208 1530 chr3R 4861568 4861598 chr3R 4861648 4861677 6 80 3.0 3.5 3.2 1.4 109 chr3R 4861568 intron opa + chr3R 4861622 intron opa + chr3R 4861677 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-208 1531 chr3R 4887482 4887499 chr3R 4894858 4894874 rover 6 7376 2.0 4.0 3.0 1.5 7392 chr3R 4887482 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894874 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-208 1532 chr3R 4896305 4896324 chr3R 4896398 4896416 9 93 1.5 6.5 4.0 1.8 111 chr3R 4896305 intergenic CR45580 + chr3R 4896360 intergenic CR45580 + chr3R 4896416 5` UTR CR45580 + chr3R_9_4895001 chr3R_4895001 RAL-208 1533 chr3R 4981413 4981440 chr3R 4981492 4981517 5 78 0.5 3.5 2.0 1.7 104 chr3R 4981413 intergenic not near genes chr3R 4981465 intergenic not near genes chr3R 4981517 intergenic CG14662 - chr3R_5_4980001 chr3R_4980001 RAL-208 1534 chr3R 5045843 5045875 chr3R 5052945 5052976 HMS-Beagle 7 7102 1.5 1.5 1.5 2.8 7133 chr3R 5045843 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052976 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-208 1535 chr3R 5067980 5068007 chr3R 5073497 5073524 mdg3 9 5517 7.5 3.5 5.5 1.4 5544 chr3R 5067980 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073524 intergenic not near genes chr3R_9_5070001 chr3R_5070001 RAL-208 1536 chr3R 5191370 5191397 chr3R 5191646 5191674 13 276 21.0 30.5 25.8 0.5 304 chr3R 5191370 intron cno - chr3R 5191522 intron cno - chr3R 5191674 intron cno - chr3R_13_5190001 chr3R_5190001 RAL-208 1537 chr3R 5278089 5278119 chr3R 5278170 5278200 15 81 3.0 2.0 2.5 4.3 111 chr3R 5278089 intron mtd - chr3R 5278144 intron mtd - chr3R 5278200 intron mtd - chr3R_15_5275001 chr3R_5275001 RAL-208 1538 chr3R 5338392 5338424 chr3R 5343569 5343601 Rt1c 14 5177 2.0 1.0 1.5 5.6 5209 chr3R 5338392 intron mtd - chr3R 5340996 intron mtd - chr3R 5343601 intron mtd - chr3R_14_5340001 chr3R_5340001 RAL-208 1539 chr3R 5365338 5365345 chr3R 5367006 5367013 NOF 5 1668 6.5 6.0 6.2 0.7 1675 chr3R 5365338 intron Cerk - chr3R 5366176 intron Cerk - chr3R 5367013 intron Cerk - chr3R_5_5365001 chr3R_5365001 RAL-208 1540 chr3R 5367149 5367177 chr3R 5367275 5367303 10 126 3.0 4.5 3.8 2.1 154 chr3R 5367149 intron Cerk - chr3R 5367226 intron Cerk - chr3R 5367303 intron Cerk - chr3R_10_5365001 chr3R_5365001 RAL-208 1541 chr3R 5385976 5386004 chr3R 5386147 5386174 19 171 4.5 6.0 5.2 3.1 198 chr3R 5385976 intron kkv - chr3R 5386075 intron kkv - chr3R 5386174 intron kkv - chr3R_19_5385001 chr3R_5385001 RAL-208 1542 chr3R 5438790 5438811 chr3R 5438959 5438980 7 169 4.0 9.5 6.8 0.9 190 chr3R 5438790 intron CG14669 + chr3R 5438885 intron CG14669 + chr3R 5438980 intron CG14669 + chr3R_7_5435001 chr3R_5435001 RAL-208 1543 chr3R 5445963 5445987 chr3R 5452423 5452447 Burdock 9 6460 4.0 1.5 2.8 2.4 6484 chr3R 5445963 intron CG14669 + chr3R 5449205 intron CG14669 + chr3R 5452447 intron CG14669 + chr3R_9_5445001 chr3R_5445001 RAL-208 1544 chr3R 5726089 5726126 chr3R 5726251 5726288 13 162 3.5 2.0 2.8 3.4 199 chr3R 5726089 intergenic not near genes chr3R 5726188 intergenic not near genes chr3R 5726288 intergenic not near genes chr3R_13_5725001 chr3R_5725001 RAL-208 1545 chr3R 5746014 5746046 chr3R 5746255 5746287 pogo 8 240 1.0 3.0 2.0 2.7 273 chr3R 5746014 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_8_5745001 chr3R_5745001 RAL-208 1546 chr3R 5747016 5747039 chr3R 5753207 5753230 diver 5 6191 6.5 4.0 5.2 0.8 6214 chr3R 5747016 intergenic Madm + chr3R 5750123 intergenic not near genes chr3R 5753230 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-208 1547 chr3R 5772383 5772404 chr3R 5772541 5772562 11 158 3.5 6.0 4.8 1.9 179 chr3R 5772383 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772562 intron CG2082 - chr3R_11_5770001 chr3R_5770001 RAL-208 1548 chr3R 5809116 5809133 chr3R 5809357 5809374 pogo 5 241 2.0 3.0 2.5 1.4 258 chr3R 5809116 3` UTR CG11000 + chr3R 5809245 3` UTR CG11000 + chr3R 5809374 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-208 1549 chr3R 5822378 5822412 chr3R 5823545 5823579 1360 18 1167 2.0 6.5 4.2 3.5 1201 chr3R 5822378 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_18_5820001 chr3R_5820001 RAL-208 1550 chr3R 5840823 5840853 chr3R 5840912 5840942 16 89 4.5 2.5 3.5 3.6 119 chr3R 5840823 intergenic CG1213 + chr3R 5840882 intergenic CG1213 + chr3R 5840942 intergenic CG1213 + chr3R_16_5840001 chr3R_5840001 RAL-208 1551 chr3R 5927564 5927583 chr3R 5927804 5927822 pogo 10 240 2.0 5.0 3.5 2.2 258 chr3R 5927564 intron CG34113 - chr3R 5927693 intron CG34113 - chr3R 5927822 intron CG34113 - chr3R_10_5925001 chr3R_5925001 RAL-208 1552 chr3R 5935363 5935395 chr3R 5935439 5935471 12 75 3.5 2.5 3.0 3.0 108 chr3R 5935363 intron CG34113 - chr3R 5935417 intron CG34113 - chr3R 5935471 intron CG34113 - chr3R_12_5935001 chr3R_5935001 RAL-208 1553 chr3R 6015969 6015991 chr3R 6024450 6024472 Tirant 13 8481 2.5 2.5 2.5 3.7 8503 chr3R 6015969 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024472 intergenic not near genes chr3R_13_6020001 chr3R_6020001 RAL-208 1554 chr3R 6048446 6048478 chr3R 6048529 6048561 14 83 4.5 2.5 3.5 3.1 115 chr3R 6048446 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048561 intergenic not near genes chr3R_14_6045001 chr3R_6045001 RAL-208 1555 chr3R 6119135 6119154 chr3R 6119221 6119240 7 86 1.0 1.5 1.2 3.2 105 chr3R 6119135 intergenic not near genes chr3R 6119188 intergenic not near genes chr3R 6119240 intergenic not near genes chr3R_7_6115001 chr3R_6115001 RAL-208 1556 chr3R 6158085 6158106 chr3R 6158299 6158317 6 214 1.5 9.0 5.2 1.0 232 chr3R 6158085 intergenic not near genes chr3R 6158201 intergenic not near genes chr3R 6158317 intergenic not near genes chr3R_6_6155001 chr3R_6155001 RAL-208 1557 chr3R 6158507 6158540 chr3R 6167090 6167122 Tirant 9 8582 5.0 3.5 4.2 1.7 8615 chr3R 6158507 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167122 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-208 1558 chr3R 6175180 6175205 chr3R 6182452 6182471 HMS-Beagle2 11 7271 1.5 2.0 1.8 3.9 7291 chr3R 6175180 intergenic Osi1 + chr3R 6178826 intron CR45194 + chr3R 6182471 intergenic CR45194 + chr3R_11_6175001 chr3R_6175001 RAL-208 1559 chr3R 6186524 6186554 chr3R 6186606 6186635 13 81 4.0 7.0 5.5 2.0 111 chr3R 6186524 intergenic not near genes chr3R 6186580 intergenic not near genes chr3R 6186635 intergenic not near genes chr3R_13_6185001 chr3R_6185001 RAL-208 1560 chr3R 6191171 6191198 chr3R 6191250 6191278 7 80 2.0 1.5 1.8 2.5 107 chr3R 6191171 intron NPFR + chr3R 6191224 intron NPFR + chr3R 6191278 intron NPFR + chr3R_7_6190001 chr3R_6190001 RAL-208 1561 chr3R 6206284 6206315 chr3R 6206501 6206532 BS 17 217 3.0 2.5 2.8 4.5 248 chr3R 6206284 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206532 intron Osi24 + chr3R_17_6205001 chr3R_6205001 RAL-208 1562 chr3R 6433736 6433759 chr3R 6433820 6433843 8 84 2.5 1.5 2.0 2.7 107 chr3R 6433736 intron gpp + chr3R 6433790 intron gpp + chr3R 6433843 intron gpp + chr3R_8_6430001 chr3R_6430001 RAL-208 1563 chr3R 6482112 6482133 chr3R 6482198 6482218 13 86 3.0 2.5 2.8 3.4 106 chr3R 6482112 intron CG15186 + chr3R 6482165 intron CG15186 + chr3R 6482218 intron CG15186 + chr3R_13_6480001 chr3R_6480001 RAL-208 1564 chr3R 6510025 6510055 chr3R 6515105 6515136 jockey 9 5081 2.0 2.5 2.2 2.8 5111 chr3R 6510025 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515136 intergenic not near genes chr3R_9_6510001 chr3R_6510001 RAL-208 1565 chr3R 6526346 6526369 chr3R 6526538 6526561 10 192 3.0 3.0 3.0 2.5 215 chr3R 6526346 intergenic not near genes chr3R 6526454 intergenic not near genes chr3R 6526561 intergenic not near genes chr3R_10_6525001 chr3R_6525001 RAL-208 1566 chr3R 6589904 6589931 chr3R 6589985 6590013 14 82 4.0 4.0 4.0 2.8 109 chr3R 6589904 intron dpr11 - chr3R 6589958 intron dpr11 - chr3R 6590013 intron dpr11 - chr3R_14_6585001 chr3R_6585001 RAL-208 1567 chr3R 6616867 6616890 chr3R 6616944 6616967 15 77 4.5 3.5 4.0 3.0 100 chr3R 6616867 intergenic not near genes chr3R 6616917 intergenic not near genes chr3R 6616967 intergenic not near genes chr3R_15_6615001 chr3R_6615001 RAL-208 1568 chr3R 6639913 6639934 chr3R 6639991 6640011 6 78 3.0 0.0 1.5 2.4 98 chr3R 6639913 intergenic not near genes chr3R 6639962 intergenic not near genes chr3R 6640011 intergenic not near genes chr3R_6_6635001 chr3R_6635001 RAL-208 1569 chr3R 6737518 6737528 chr3R 6739305 6739311 Doc 7 1786 6.0 5.0 5.5 1.1 1793 chr3R 6737518 intron pb - chr3R 6738414 intron pb - chr3R 6739311 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-208 1570 chr3R 6751737 6751738 chr3R 6752112 6752114 4 376 6.0 3.0 4.5 0.7 377 chr3R 6751737 intergenic not near genes chr3R 6751926 intergenic not near genes chr3R 6752114 intergenic not near genes chr3R_4_6750001 chr3R_6750001 RAL-208 1571 chr3R 6773555 6773584 chr3R 6773643 6773673 13 88 4.0 3.0 3.5 2.9 118 chr3R 6773555 intron CR42721 + chr3R 6773614 intron CR42721 + chr3R 6773673 intron CR42721 + chr3R_13_6770001 chr3R_6770001 RAL-208 1572 chr3R 6780447 6780483 chr3R 6780530 6780566 18 83 2.5 1.5 2.0 6.0 119 chr3R 6780447 intergenic not near genes chr3R 6780506 intergenic not near genes chr3R 6780566 intergenic not near genes chr3R_18_6780001 chr3R_6780001 RAL-208 1573 chr3R 6782433 6782470 chr3R 6782512 6782549 9 78 2.5 2.0 2.2 2.8 116 chr3R 6782433 intergenic not near genes chr3R 6782491 intergenic not near genes chr3R 6782549 intergenic not near genes chr3R_9_6780001 chr3R_6780001 RAL-208 1574 chr3R 6807268 6807296 chr3R 6807349 6807378 12 82 0.5 1.5 1.0 6.0 110 chr3R 6807268 intergenic not near genes chr3R 6807323 intergenic not near genes chr3R 6807378 intergenic not near genes chr3R_12_6805001 chr3R_6805001 RAL-208 1575 chr3R 6856386 6856399 chr3R 6856503 6856516 5 117 3.0 1.0 2.0 1.7 130 chr3R 6856386 intergenic not near genes chr3R 6856451 intergenic not near genes chr3R 6856516 intergenic not near genes chr3R_5_6855001 chr3R_6855001 RAL-208 1576 chr3R 6862222 6862251 chr3R 6862309 6862338 8 87 0.5 0.5 0.5 5.3 116 chr3R 6862222 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862338 intergenic not near genes chr3R_8_6860001 chr3R_6860001 RAL-208 1577 chr3R 6923583 6923617 chr3R 6923670 6923701 9 86 1.0 1.5 1.2 4.1 118 chr3R 6923583 intron Antp - chr3R 6923642 intron Antp - chr3R 6923701 intron Antp - chr3R_9_6920001 chr3R_6920001 RAL-208 1578 chr3R 6961179 6961203 chr3R 6961258 6961282 8 79 3.0 3.0 3.0 2.0 103 chr3R 6961179 intron Antp - chr3R 6961230 intron Antp - chr3R 6961282 intron Antp - chr3R_8_6960001 chr3R_6960001 RAL-208 1579 chr3R 7012217 7012231 chr3R 7012295 7012307 6 77 1.0 6.5 3.8 1.2 90 chr3R 7012217 intergenic not near genes chr3R 7012262 intergenic not near genes chr3R 7012307 intergenic not near genes chr3R_6_7010001 chr3R_7010001 RAL-208 1580 chr3R 7060262 7060276 chr3R 7060343 7060357 4 81 6.0 0.5 3.2 1.0 95 chr3R 7060262 3` UTR dj + chr3R 7060310 3` UTR dj + chr3R 7060357 3` UTR dj + chr3R_4_7060001 chr3R_7060001 RAL-208 1581 chr3R 7103928 7103961 chr3R 7104027 7104060 13 99 6.0 5.0 5.5 2.0 132 chr3R 7103928 intron Alh - chr3R 7103994 intron Alh - chr3R 7104060 intron Alh - chr3R_13_7100001 chr3R_7100001 RAL-208 1582 chr3R 7173681 7173694 chr3R 7173760 7173774 6 79 4.0 2.5 3.2 1.4 93 chr3R 7173681 intron sas + chr3R 7173728 intron sas + chr3R 7173774 intron sas + chr3R_6_7170001 chr3R_7170001 RAL-208 1583 chr3R 7206878 7206904 chr3R 7206967 7206992 10 88 3.5 2.5 3.0 2.5 114 chr3R 7206878 intergenic CG1288 - chr3R 7206935 intergenic CG1288 - chr3R 7206992 intergenic CG1288 - chr3R_10_7205001 chr3R_7205001 RAL-208 1584 chr3R 7372993 7373022 chr3R 7373072 7373101 11 78 1.0 1.5 1.2 5.0 108 chr3R 7372993 intergenic not near genes chr3R 7373047 intergenic not near genes chr3R 7373101 intergenic not near genes chr3R_11_7370001 chr3R_7370001 RAL-208 1585 chr3R 7385581 7385606 chr3R 7385657 7385677 8 75 5.0 2.0 3.5 1.8 96 chr3R 7385581 intergenic not near genes chr3R 7385629 intergenic not near genes chr3R 7385677 intergenic not near genes chr3R_8_7385001 chr3R_7385001 RAL-208 1586 chr3R 7447992 7448006 chr3R 7448069 7448084 5 78 8.0 3.5 5.8 0.7 92 chr3R 7447992 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448084 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-208 1587 chr3R 7464689 7464721 chr3R 7464775 7464806 12 86 4.5 2.5 3.5 2.7 117 chr3R 7464689 intergenic not near genes chr3R 7464748 intergenic not near genes chr3R 7464806 intergenic not near genes chr3R_12_7460001 chr3R_7460001 RAL-208 1588 chr3R 7551183 7551205 chr3R 7551667 7551688 5 484 2.0 4.5 3.2 1.2 505 chr3R 7551183 intergenic not near genes chr3R 7551436 intergenic not near genes chr3R 7551688 intergenic CG45545 + chr3R_5_7550001 chr3R_7550001 RAL-208 1589 chr3R 7671396 7671420 chr3R 7672170 7672194 6 774 4.0 6.0 5.0 1.0 798 chr3R 7671396 intron Nlg1 + chr3R 7671795 intron Nlg1 + chr3R 7672194 intron Nlg1 + chr3R_6_7670001 chr3R_7670001 RAL-208 1590 chr3R 7687731 7687736 chr3R 7687889 7687894 5 157 0.5 1.5 1.0 2.5 163 chr3R 7687731 intron Nlg1 + chr3R 7687812 intron Nlg1 + chr3R 7687894 intron Nlg1 + chr3R_5_7685001 chr3R_7685001 RAL-208 1591 chr3R 7694575 7694590 chr3R 7713636 7713651 invader3 6 19061 5.0 1.0 3.0 1.5 19076 chr3R 7694575 3` UTR Nlg1 + chr3R 7704113 intergenic not near genes chr3R 7713651 intergenic not near genes chr3R_6_7700001 chr3R_7700001 RAL-208 1592 chr3R 7726153 7726184 chr3R 7726230 7726261 14 77 1.5 2.0 1.8 5.0 108 chr3R 7726153 intergenic not near genes chr3R 7726207 intergenic not near genes chr3R 7726261 intergenic not near genes chr3R_14_7725001 chr3R_7725001 RAL-208 1593 chr3R 7729465 7729498 chr3R 7737403 7737436 Stalker2 15 7937 4.0 8.0 6.0 2.1 7971 chr3R 7729465 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737436 intergenic not near genes chr3R_15_7730001 chr3R_7730001 RAL-208 1594 chr3R 7821720 7821746 chr3R 7821816 7821842 5 96 3.0 4.5 3.8 1.0 122 chr3R 7821720 intron CG34384 + chr3R 7821781 intron CG34384 + chr3R 7821842 intron CG34384 + chr3R_5_7820001 chr3R_7820001 RAL-208 1595 chr3R 7828711 7828730 chr3R 7828798 7828817 5 86 2.0 6.0 4.0 1.0 106 chr3R 7828711 intron CG34384 + chr3R 7828764 intron CG34384 + chr3R 7828817 intron CG34384 + chr3R_5_7825001 chr3R_7825001 RAL-208 1596 chr3R 7830302 7830328 chr3R 7830452 7830479 9 150 4.5 2.5 3.5 2.0 177 chr3R 7830302 intron CG34384 + chr3R 7830390 intron CG34384 + chr3R 7830479 intron CG34384 + chr3R_9_7830001 chr3R_7830001 RAL-208 1597 chr3R 7849657 7849676 chr3R 7850824 7850843 1360 6 1167 2.5 2.5 2.5 1.7 1186 chr3R 7849657 intron CG34384 + chr3R 7850250 intron CG34384 + chr3R 7850843 intron CG34384 + chr3R_6_7850001 chr3R_7850001 RAL-208 1598 chr3R 7853863 7853892 chr3R 7860009 7860038 13 6146 8.0 32.5 20.2 0.6 6175 chr3R 7853863 3` UTR CG34384 + chr3R 7856950 3` UTR CG17816 - chr3R 7860038 intron CG17816 - chr3R_13_7855001 chr3R_7855001 RAL-208 1599 chr3R 7951460 7951492 chr3R 7951559 7951591 16 99 4.5 3.5 4.0 3.2 131 chr3R 7951460 intron dsx - chr3R 7951526 intron dsx - chr3R 7951591 intron dsx - chr3R_16_7950001 chr3R_7950001 RAL-208 1600 chr3R 7973318 7973341 chr3R 7974380 7974403 1360 12 1062 3.0 6.5 4.8 2.1 1085 chr3R 7973318 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974403 intergenic CD98hc - chr3R_12_7970001 chr3R_7970001 RAL-208 1601 chr3R 8033035 8033067 chr3R 8033124 8033156 7 89 4.0 3.0 3.5 1.6 121 chr3R 8033035 intergenic CG11035 -,unc-45 + chr3R 8033096 intergenic CG11035 -,unc-45 + chr3R 8033156 intergenic unc-45 +,CG11035 - chr3R_7_8030001 chr3R_8030001 RAL-208 1602 chr3R 8042177 8042180 chr3R 8042367 8042370 4 190 11.5 10.0 10.8 0.3 193 chr3R 8042177 intron CG43060 + chr3R 8042274 intron CG43060 + chr3R 8042370 intron CG43060 + chr3R_4_8040001 chr3R_8040001 RAL-208 1603 chr3R 8069999 8070010 chr3R 8070105 8070116 9 106 0.0 6.0 3.0 2.2 117 chr3R 8069999 intron mAChR-B + chr3R 8070058 intron mAChR-B + chr3R 8070116 intron mAChR-B + chr3R_9_8070001 chr3R_8070001 RAL-208 1604 chr3R 8070916 8070927 chr3R 8070997 8071008 6 80 4.5 4.0 4.2 1.2 92 chr3R 8070916 intron mAChR-B + chr3R 8070962 intron mAChR-B + chr3R 8071008 intron mAChR-B + chr3R_6_8070001 chr3R_8070001 RAL-208 1605 chr3R 8094409 8094441 chr3R 8099714 8099745 Transpac 13 5305 3.5 4.5 4.0 2.6 5336 chr3R 8094409 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099745 intron CG7900 + chr3R_13_8095001 chr3R_8095001 RAL-208 1606 chr3R 8101763 8101781 chr3R 8104847 8104865 G2 7 3084 3.0 3.0 3.0 1.8 3102 chr3R 8101763 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104865 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-208 1607 chr3R 8107386 8107418 chr3R 8107520 8107552 10 134 1.5 2.5 2.0 3.3 166 chr3R 8107386 intron puc + chr3R 8107469 intron puc + chr3R 8107552 intron puc + chr3R_10_8105001 chr3R_8105001 RAL-208 1608 chr3R 8207557 8207574 chr3R 8208402 8208419 F-element 10 844 2.5 4.5 3.5 2.2 862 chr3R 8207557 intergenic not near genes chr3R 8207988 intergenic not near genes chr3R 8208419 intergenic not near genes chr3R_10_8205001 chr3R_8205001 RAL-208 1609 chr3R 8222694 8222717 chr3R 8222801 8222825 7 109 0.5 0.5 0.5 4.7 131 chr3R 8222694 intergenic not near genes chr3R 8222760 intergenic not near genes chr3R 8222825 intergenic not near genes chr3R_7_8220001 chr3R_8220001 RAL-208 1610 chr3R 8255510 8255541 chr3R 8255598 8255630 9 89 3.5 2.5 3.0 2.2 120 chr3R 8255510 intron mtg + chr3R 8255570 intron mtg + chr3R 8255630 intron mtg + chr3R_9_8255001 chr3R_8255001 RAL-208 1611 chr3R 8273732 8273769 chr3R 8273819 8273856 16 87 0.0 2.5 1.2 7.3 124 chr3R 8273732 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273856 intergenic not near genes chr3R_16_8270001 chr3R_8270001 RAL-208 1612 chr3R 8339246 8339247 chr3R 21907534 21907536 5 13568289 18.0 12.0 15.0 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-208 1613 chr3R 8358129 8358135 chr3R 8358373 8358379 5 244 4.0 5.5 4.8 0.9 250 chr3R 8358129 intron stck + chr3R 8358254 intron stck + chr3R 8358379 intron stck + chr3R_5_8355001 chr3R_8355001 RAL-208 1614 chr3R 8403008 8403024 chr3R 8412174 8412190 roo 7 9165 6.5 4.0 5.2 1.1 9182 chr3R 8403008 intron CG45263 - chr3R 8407599 intron CG45263 - chr3R 8412190 intron CG45263 - chr3R_7_8405001 chr3R_8405001 RAL-208 1615 chr3R 8478081 8478097 chr3R 8478161 8478177 14 79 4.5 3.0 3.8 2.9 96 chr3R 8478081 intergenic CG45263 - chr3R 8478129 intergenic not near genes chr3R 8478177 intergenic not near genes chr3R_14_8475001 chr3R_8475001 RAL-208 1616 chr3R 8547140 8547175 chr3R 8547229 8547264 12 88 1.5 2.5 2.0 4.0 124 chr3R 8547140 5` UTR CR45574 + chr3R 8547202 5` UTR CR45574 + chr3R 8547264 5` UTR CR45574 + chr3R_12_8545001 chr3R_8545001 RAL-208 1617 chr3R 8570479 8570510 chr3R 8575115 8575146 HMS-Beagle 6 4636 4.0 3.5 3.8 1.2 4667 chr3R 8570479 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-208 1618 chr3R 8601767 8601794 chr3R 8610920 8610947 roo 8 9153 5.5 1.0 3.2 1.9 9180 chr3R 8601767 intron 5-HT2B + chr3R 8606357 intron 5-HT2B + chr3R 8610947 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-208 1619 chr3R 8685306 8685310 chr3R 8685406 8685408 4 100 2.0 2.0 2.0 1.3 102 chr3R 8685306 intron CR44937 - chr3R 8685357 intron CR44937 - chr3R 8685408 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-208 1620 chr3R 8707362 8707385 chr3R 8709803 8709826 jockey 13 2441 4.5 4.5 4.5 2.4 2464 chr3R 8707362 intergenic not near genes chr3R 8708594 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_13_8705001 chr3R_8705001 RAL-208 1621 chr3R 8807602 8807629 chr3R 8807694 8807721 11 92 3.0 4.5 3.8 2.3 119 chr3R 8807602 intergenic hng2 + chr3R 8807662 intergenic hng2 + chr3R 8807721 intergenic hng2 + chr3R_11_8805001 chr3R_8805001 RAL-208 1622 chr3R 8867960 8867992 chr3R 8868097 8868129 7 137 2.5 1.5 2.0 2.3 169 chr3R 8867960 intron pyd - chr3R 8868044 intron pyd - chr3R 8868129 intron pyd - chr3R_7_8865001 chr3R_8865001 RAL-208 1623 chr3R 8877174 8877208 chr3R 8877255 8877289 20 80 3.0 2.0 2.5 5.7 115 chr3R 8877174 intron pyd - chr3R 8877232 intron pyd - chr3R 8877289 intron pyd - chr3R_20_8875001 chr3R_8875001 RAL-208 1624 chr3R 8917889 8917912 chr3R 8917969 8917992 14 80 2.0 4.0 3.0 3.5 103 chr3R 8917889 intron pyd - chr3R 8917940 intron pyd - chr3R 8917992 intron pyd - chr3R_14_8915001 chr3R_8915001 RAL-208 1625 chr3R 8991236 8991237 chr3R 9851743 9851744 4 860507 16.5 5.5 11.0 0.3 860508 chr3R 8991236 exon E(var)3-9 - chr3R 9421490 intron ps + chr3R 9851744 intron Teh1 - chr3R_4_9420001 chr3R_9420001 RAL-208 1626 chr3R 9082049 9082072 chr3R 9082141 9082166 7 93 1.0 0.0 0.5 4.7 117 chr3R 9082049 intron pum - chr3R 9082108 intron pum - chr3R 9082166 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-208 1627 chr3R 9095291 9095312 chr3R 9095377 9095399 5 87 4.5 3.0 3.8 1.0 108 chr3R 9095291 intron pum - chr3R 9095345 intron pum - chr3R 9095399 intron pum - chr3R_5_9095001 chr3R_9095001 RAL-208 1628 chr3R 9108865 9108883 chr3R 9108940 9108959 12 76 5.0 2.5 3.8 2.5 94 chr3R 9108865 intron pum - chr3R 9108912 intron pum - chr3R 9108959 intron pum - chr3R_12_9105001 chr3R_9105001 RAL-208 1629 chr3R 9278783 9278809 chr3R 9284043 9284069 Rt1a 8 5260 0.5 6.5 3.5 1.8 5286 chr3R 9278783 intergenic not near genes chr3R 9281426 intergenic not near genes chr3R 9284069 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-208 1630 chr3R 9289067 9289090 chr3R 9289149 9289173 14 82 2.5 2.0 2.2 4.4 106 chr3R 9289067 intergenic not near genes chr3R 9289120 intergenic not near genes chr3R 9289173 intergenic not near genes chr3R_14_9285001 chr3R_9285001 RAL-208 1631 chr3R 9304530 9304540 chr3R 9311817 9311827 Stalker4 6 7287 2.5 0.5 1.5 2.4 7297 chr3R 9304530 intron CG8861 - chr3R 9308178 intron CG8861 - chr3R 9311827 intron CG8861 - chr3R_6_9305001 chr3R_9305001 RAL-208 1632 chr3R 9319570 9319599 chr3R 9320005 9320033 jockey 11 434 5.0 4.5 4.8 1.9 463 chr3R 9319570 intron CG8861 - chr3R 9319802 intron CG8861 - chr3R 9320033 intron CG8861 - chr3R_11_9315001 chr3R_9315001 RAL-208 1633 chr3R 9361815 9361847 chr3R 9362056 9362088 pogo 6 240 2.5 1.0 1.8 2.1 273 chr3R 9361815 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362088 3` UTR CG45050 + chr3R_6_9360001 chr3R_9360001 RAL-208 1634 chr3R 9601461 9601490 chr3R 9601579 9601608 17 118 2.5 5.5 4.0 3.4 147 chr3R 9601461 intron CG8312 + chr3R 9601534 intron CG8312 + chr3R 9601608 intron CG8312 + chr3R_17_9600001 chr3R_9600001 RAL-208 1635 chr3R 9879643 9879663 chr3R 9879766 9879784 6 123 3.0 7.5 5.2 1.0 141 chr3R 9879643 intron Glut4EF + chr3R 9879714 intron Glut4EF + chr3R 9879784 intron Glut4EF + chr3R_6_9875001 chr3R_9875001 RAL-208 1636 chr3R 10090591 10090598 chr3R 10090691 10090698 4 100 3.5 1.0 2.2 1.2 107 chr3R 10090591 intergenic CR45054 + chr3R 10090644 intergenic CR45054 +,mir-317 + chr3R 10090698 intergenic CR45054 +,mir-317 + chr3R_4_10090001 chr3R_10090001 RAL-208 1637 chr3R 10183105 10183111 chr3R 10183179 10183188 12 76 2.0 3.5 2.8 3.2 83 chr3R 10183105 intron CG12814 - chr3R 10183146 intron CG12814 - chr3R 10183188 intron CG12814 - chr3R_12_10180001 chr3R_10180001 RAL-208 1638 chr3R 10231789 10231814 chr3R 10237366 10237391 mdg3 6 5577 3.0 4.5 3.8 1.2 5602 chr3R 10231789 intron CG42795 + chr3R 10234590 intron CG42795 + chr3R 10237391 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-208 1639 chr3R 10255380 10255387 chr3R 10260820 10260827 I-element 7 5440 7.0 4.5 5.8 1.0 5447 chr3R 10255380 exon Sirt6 - chr3R 10258104 intron Sirt6 - chr3R 10260827 exon Sirt6 - chr3R_7_10255001 chr3R_10255001 RAL-208 1640 chr3R 10275561 10275586 chr3R 10275638 10275663 6 77 3.5 3.0 3.2 1.4 102 chr3R 10275561 intron CG43143 + chr3R 10275612 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-208 1641 chr3R 10403030 10403063 chr3R 10403111 10403144 7 81 1.0 2.0 1.5 2.8 114 chr3R 10403030 3` UTR CG6325 - chr3R 10403087 3` UTR CG6325 - chr3R 10403144 3` UTR CG6325 - chr3R_7_10400001 chr3R_10400001 RAL-208 1642 chr3R 10428580 10428610 chr3R 10428773 10428817 6 202 3.5 0.5 2.0 2.0 237 chr3R 10428580 intergenic not near genes chr3R 10428698 intergenic not near genes chr3R 10428817 intergenic not near genes chr3R_6_10425001 chr3R_10425001 RAL-208 1643 chr3R 10531867 10531889 chr3R 10531948 10531970 7 81 6.0 0.0 3.0 1.8 103 chr3R 10531867 intron hth - chr3R 10531918 intron hth - chr3R 10531970 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-208 1644 chr3R 10535335 10535340 chr3R 10535428 10535433 5 93 2.0 0.0 1.0 2.5 98 chr3R 10535335 intron hth - chr3R 10535384 intron hth - chr3R 10535433 intron hth - chr3R_5_10535001 chr3R_10535001 RAL-208 1645 chr3R 10596625 10596639 chr3R 10596699 10596714 5 75 0.5 0.0 0.2 4.2 89 chr3R 10596625 intron hth - chr3R 10596670 intron hth - chr3R 10596714 intron hth - chr3R_5_10595001 chr3R_10595001 RAL-208 1646 chr3R 10641595 10641620 chr3R 10641675 10641700 6 80 0.5 0.5 0.5 4.0 105 chr3R 10641595 5` UTR CR44018 + chr3R 10641648 5` UTR CR44018 + chr3R 10641700 5` UTR CR44018 + chr3R_6_10640001 chr3R_10640001 RAL-208 1647 chr3R 10651808 10651843 chr3R 10651907 10651942 6 99 1.5 2.0 1.8 2.1 134 chr3R 10651808 intergenic not near genes chr3R 10651875 intergenic not near genes chr3R 10651942 intergenic not near genes chr3R_6_10650001 chr3R_10650001 RAL-208 1648 chr3R 10668608 10668612 chr3R 10668684 10668688 4 76 1.0 1.5 1.2 1.8 80 chr3R 10668608 intergenic not near genes chr3R 10668648 intergenic not near genes chr3R 10668688 intergenic not near genes chr3R_4_10665001 chr3R_10665001 RAL-208 1649 chr3R 10723767 10723784 chr3R 10723859 10723876 6 92 2.0 0.0 1.0 3.0 109 chr3R 10723767 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723876 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-208 1650 chr3R 10727646 10727677 chr3R 10727726 10727757 12 80 1.0 4.0 2.5 3.4 111 chr3R 10727646 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727757 intergenic not near genes chr3R_12_10725001 chr3R_10725001 RAL-208 1651 chr3R 10745424 10745455 chr3R 10745511 10745541 15 86 0.5 1.0 0.8 8.3 117 chr3R 10745424 intron TkR86C - chr3R 10745482 intron TkR86C - chr3R 10745541 intron TkR86C - chr3R_15_10745001 chr3R_10745001 RAL-208 1652 chr3R 10804184 10804207 chr3R 10811716 10811739 17.6 7 7532 0.0 1.5 0.8 3.9 7555 chr3R 10804184 intergenic CG14692 - chr3R 10807962 intergenic not near genes chr3R 10811739 3` UTR CG14693 - chr3R_7_10805001 chr3R_10805001 RAL-208 1653 chr3R 10817217 10817252 chr3R 10817300 10817335 9 83 1.0 3.5 2.2 2.8 118 chr3R 10817217 3` UTR CG4089 + chr3R 10817276 3` UTR CG4089 + chr3R 10817335 3` UTR CG4089 + chr3R_9_10815001 chr3R_10815001 RAL-208 1654 chr3R 10868596 10868625 chr3R 10868674 10868703 6 78 3.0 1.5 2.2 1.9 107 chr3R 10868596 5` UTR SelR - chr3R 10868650 intergenic SelR -,Tsp86D + chr3R 10868703 intergenic Tsp86D +,SelR - chr3R_6_10865001 chr3R_10865001 RAL-208 1655 chr3R 10904910 10904932 chr3R 10905112 10905135 6 203 3.5 2.0 2.8 1.6 225 chr3R 10904910 intergenic not near genes chr3R 10905022 intergenic not near genes chr3R 10905135 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-208 1656 chr3R 10906835 10906844 chr3R 10906910 10906920 6 76 3.5 1.0 2.2 1.9 85 chr3R 10906835 intergenic not near genes chr3R 10906878 intergenic not near genes chr3R 10906920 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-208 1657 chr3R 10919683 10919700 chr3R 10919761 10919778 7 78 6.0 3.0 4.5 1.3 95 chr3R 10919683 intergenic not near genes chr3R 10919730 intergenic not near genes chr3R 10919778 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-208 1658 chr3R 10920044 10920076 chr3R 10920122 10920153 8 78 1.5 1.5 1.5 3.2 109 chr3R 10920044 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920153 intergenic not near genes chr3R_8_10920001 chr3R_10920001 RAL-208 1659 chr3R 10957871 10957884 chr3R 10963260 10963273 Rt1c 5 5389 0.0 3.0 1.5 2.0 5402 chr3R 10957871 intergenic not near genes chr3R 10960572 intergenic not near genes chr3R 10963273 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-208 1660 chr3R 10979654 10979687 chr3R 10979736 10979769 10 82 2.5 3.5 3.0 2.5 115 chr3R 10979654 intron CG34114 + chr3R 10979712 intron CG34114 + chr3R 10979769 intron CG34114 + chr3R_10_10975001 chr3R_10975001 RAL-208 1661 chr3R 10994284 10994307 chr3R 10994359 10994386 12 78 4.5 1.0 2.8 3.2 102 chr3R 10994284 intron CG34114 + chr3R 10994335 intron CG34114 + chr3R 10994386 intron CG34114 + chr3R_12_10990001 chr3R_10990001 RAL-208 1662 chr3R 11024178 11024213 chr3R 11024273 11024309 8 95 1.0 3.0 2.0 2.7 131 chr3R 11024178 intron CG34114 + chr3R 11024244 intron CG34114 + chr3R 11024309 intron CG34114 + chr3R_8_11020001 chr3R_11020001 RAL-208 1663 chr3R 11056904 11056907 chr3R 11056982 11056985 5 78 7.0 0.0 3.5 1.1 81 chr3R 11056904 intergenic not near genes chr3R 11056944 intergenic not near genes chr3R 11056985 intergenic not near genes chr3R_5_11055001 chr3R_11055001 RAL-208 1664 chr3R 11102325 11102344 chr3R 11102404 11102425 8 81 1.0 3.5 2.2 2.5 100 chr3R 11102325 intergenic not near genes chr3R 11102375 intergenic not near genes chr3R 11102425 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-208 1665 chr3R 11103174 11103181 chr3R 11103256 11103263 5 82 0.0 0.0 0.0 5.0 89 chr3R 11103174 intergenic not near genes chr3R 11103218 intergenic not near genes chr3R 11103263 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-208 1666 chr3R 11155043 11155070 chr3R 11155121 11155148 10 78 5.5 1.0 3.2 2.4 105 chr3R 11155043 intron Ugt86Dc + chr3R 11155096 intron Ugt86Dc + chr3R 11155148 intron Ugt86Dc + chr3R_10_11155001 chr3R_11155001 RAL-208 1667 chr3R 11174607 11174613 chr3R 11175321 11175327 7 714 15.0 20.5 17.8 0.4 720 chr3R 11174607 exon Ugt86Dj - chr3R 11174967 intron Ugt86Dj - chr3R 11175327 exon Ugt86Dj - chr3R_7_11170001 chr3R_11170001 RAL-208 1668 chr3R 11192282 11192308 chr3R 11192929 11192954 7 646 1.5 3.5 2.5 2.0 672 chr3R 11192282 intergenic not near genes chr3R 11192618 intergenic not near genes chr3R 11192954 intergenic not near genes chr3R_7_11190001 chr3R_11190001 RAL-208 1669 chr3R 11379238 11379269 chr3R 11388393 11388424 roo 9 9155 3.0 1.5 2.2 2.8 9186 chr3R 11379238 intron pros + chr3R 11383831 intron pros + chr3R 11388424 intron pros + chr3R_9_11380001 chr3R_11380001 RAL-208 1670 chr3R 11518813 11518845 chr3R 11518904 11518935 8 90 4.0 5.0 4.5 1.5 122 chr3R 11518813 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518935 intergenic not near genes chr3R_8_11515001 chr3R_11515001 RAL-208 1671 chr3R 11569901 11569933 chr3R 11569981 11570012 12 80 3.0 2.0 2.5 3.4 111 chr3R 11569901 intron Mrp4 + chr3R 11569956 intron Mrp4 + chr3R 11570012 intron Mrp4 + chr3R_12_11565001 chr3R_11565001 RAL-208 1672 chr3R 11684381 11684385 chr3R 11684576 11684583 4 196 4.0 5.0 4.5 0.7 202 chr3R 11684381 intergenic CG6830 -,CG6834 - chr3R 11684482 intergenic CG6830 -,CG6834 - chr3R 11684583 intergenic CG6834 -,CG6830 - chr3R_4_11680001 chr3R_11680001 RAL-208 1673 chr3R 11684647 11684662 chr3R 11687772 11687787 5 3125 4.5 1.5 3.0 1.2 3140 chr3R 11684647 intergenic CG6834 -,CG6830 - chr3R 11686217 exon CG6834 - chr3R 11687787 exon CG6834 - chr3R_5_11685001 chr3R_11685001 RAL-208 1674 chr3R 11698144 11698159 chr3R 11698220 11698234 11 77 7.0 5.5 6.2 1.5 90 chr3R 11698144 3` UTR CG14717 + chr3R 11698189 3` UTR CG14717 + chr3R 11698234 3` UTR CG14717 + chr3R_11_11695001 chr3R_11695001 RAL-208 1675 chr3R 11708630 11708663 chr3R 11708838 11708871 15 207 2.5 2.0 2.2 4.7 241 chr3R 11708630 intergenic not near genes chr3R 11708750 intergenic not near genes chr3R 11708871 intergenic not near genes chr3R_15_11705001 chr3R_11705001 RAL-208 1676 chr3R 11722030 11722054 chr3R 11722120 11722143 11 91 0.5 6.0 3.2 2.6 113 chr3R 11722030 5` UTR CG12594 + chr3R 11722086 5` UTR CG12594 + chr3R 11722143 5` UTR CG12594 + chr3R_11_11720001 chr3R_11720001 RAL-208 1677 chr3R 11723524 11723545 chr3R 11723605 11723625 11 81 2.0 5.5 3.8 2.3 101 chr3R 11723524 intron CG12594 + chr3R 11723574 intron CG12594 + chr3R 11723625 intron CG12594 + chr3R_11_11720001 chr3R_11720001 RAL-208 1678 chr3R 11841067 11841097 chr3R 11846254 11846288 BS 10 5190 3.0 3.5 3.2 2.4 5221 chr3R 11841067 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_10_11840001 chr3R_11840001 RAL-208 1679 chr3R 11990659 11990666 chr3R 11990746 11990754 4 88 2.0 0.0 1.0 2.0 95 chr3R 11990659 intron mfas - chr3R 11990706 intron mfas - chr3R 11990754 intron mfas - chr3R_4_11990001 chr3R_11990001 RAL-208 1680 chr3R 12020297 12020310 chr3R 12020570 12020578 7 271 3.0 4.0 3.5 1.6 281 chr3R 12020297 intergenic not near genes chr3R 12020438 intergenic not near genes chr3R 12020578 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-208 1681 chr3R 12022891 12022914 chr3R 12025065 12025091 pogo 11 2176 4.5 6.5 5.5 1.7 2200 chr3R 12022891 intergenic not near genes chr3R 12023991 intergenic not near genes chr3R 12025091 intergenic not near genes chr3R_11_12020001 chr3R_12020001 RAL-208 1682 chr3R 12080864 12080896 chr3R 12080941 12080974 20 77 3.0 3.0 3.0 5.0 110 chr3R 12080864 intron CG14741 - chr3R 12080919 intron CG14741 - chr3R 12080974 intron CG14741 - chr3R_20_12080001 chr3R_12080001 RAL-208 1683 chr3R 12097250 12097276 chr3R 12097353 12097380 12 104 2.5 7.0 4.8 2.1 130 chr3R 12097250 intron dpr17 + chr3R 12097315 intron dpr17 + chr3R 12097380 intron dpr17 + chr3R_12_12095001 chr3R_12095001 RAL-208 1684 chr3R 12216686 12216709 chr3R 12216767 12216790 6 81 3.5 1.5 2.5 1.7 104 chr3R 12216686 intron CG4848 - chr3R 12216738 intron CG4848 - chr3R 12216790 intron CG4848 - chr3R_6_12215001 chr3R_12215001 RAL-208 1685 chr3R 12262810 12262843 chr3R 12262893 12262926 15 82 1.5 2.0 1.8 5.4 116 chr3R 12262810 3` UTR,intron CG44037 +,svp + chr3R 12262868 3` UTR,intron CG44037 +,svp + chr3R 12262926 intron svp + chr3R_15_12260001 chr3R_12260001 RAL-208 1686 chr3R 12267859 12267889 chr3R 12267939 12267969 15 80 1.5 2.5 2.0 5.0 110 chr3R 12267859 intron svp + chr3R 12267914 intron svp + chr3R 12267969 intron svp + chr3R_15_12265001 chr3R_12265001 RAL-208 1687 chr3R 12344130 12344155 chr3R 12344207 12344231 5 77 3.5 0.0 1.8 1.8 101 chr3R 12344130 intergenic not near genes chr3R 12344180 intergenic not near genes chr3R 12344231 intergenic not near genes chr3R_5_12340001 chr3R_12340001 RAL-208 1688 chr3R 12344941 12344962 chr3R 12345113 12345138 10 175 4.0 5.5 4.8 1.7 197 chr3R 12344941 intergenic not near genes chr3R 12345040 intergenic not near genes chr3R 12345138 intergenic not near genes chr3R_10_12345001 chr3R_12345001 RAL-208 1689 chr3R 12376402 12376415 chr3R 12376488 12376501 5 86 0.5 5.5 3.0 1.2 99 chr3R 12376402 exon GstD5 + chr3R 12376452 3` UTR GstD5 + chr3R 12376501 3` UTR GstD5 + chr3R_5_12375001 chr3R_12375001 RAL-208 1690 chr3R 12548990 12549014 chr3R 12549129 12549152 10 138 5.5 4.0 4.8 1.7 162 chr3R 12548990 intergenic not near genes chr3R 12549071 intergenic not near genes chr3R 12549152 intergenic not near genes chr3R_10_12545001 chr3R_12545001 RAL-208 1691 chr3R 12555433 12555468 chr3R 12555512 12555547 10 78 8.5 1.0 4.8 1.7 114 chr3R 12555433 intron Octbeta2R - chr3R 12555490 intron Octbeta2R - chr3R 12555547 intron Octbeta2R - chr3R_10_12555001 chr3R_12555001 RAL-208 1692 chr3R 12566777 12566804 chr3R 12566945 12566972 15 167 1.0 5.0 3.0 3.8 195 chr3R 12566777 intron Octbeta2R - chr3R 12566874 intron Octbeta2R - chr3R 12566972 intron Octbeta2R - chr3R_15_12565001 chr3R_12565001 RAL-208 1693 chr3R 12713045 12713071 chr3R 12713119 12713145 11 75 1.0 3.5 2.2 3.4 100 chr3R 12713045 intergenic Men - chr3R 12713095 intergenic Men - chr3R 12713145 3` UTR Men - chr3R_11_12710001 chr3R_12710001 RAL-208 1694 chr3R 12725947 12725968 chr3R 12726051 12726069 9 104 1.5 1.0 1.2 4.1 122 chr3R 12725947 intergenic not near genes chr3R 12726008 intergenic not near genes chr3R 12726069 intergenic not near genes chr3R_9_12725001 chr3R_12725001 RAL-208 1695 chr3R 12763123 12763148 chr3R 12763198 12763226 11 77 0.0 1.5 0.8 6.1 103 chr3R 12763123 intron beat-Vc - chr3R 12763174 intron beat-Vc - chr3R 12763226 intron beat-Vc - chr3R_11_12760001 chr3R_12760001 RAL-208 1696 chr3R 12816525 12816541 chr3R 12816601 12816617 9 76 3.5 4.0 3.8 1.9 92 chr3R 12816525 intron CG31345 - chr3R 12816571 intron CG31345 - chr3R 12816617 intron CG31345 - chr3R_9_12815001 chr3R_12815001 RAL-208 1697 chr3R 12850295 12850319 chr3R 12850411 12850436 7 116 3.0 1.5 2.2 2.2 141 chr3R 12850295 intergenic CR44234 - chr3R 12850366 intergenic CR44234 - chr3R 12850436 3` UTR CR44234 - chr3R_7_12850001 chr3R_12850001 RAL-208 1698 chr3R 12858744 12858769 chr3R 12858824 12858850 7 81 2.5 1.0 1.8 2.5 106 chr3R 12858744 intron CG10126 - chr3R 12858797 intron CG10126 - chr3R 12858850 intron CG10126 - chr3R_7_12855001 chr3R_12855001 RAL-208 1699 chr3R 12880119 12880152 chr3R 12880195 12880228 12 76 6.5 3.0 4.8 2.1 109 chr3R 12880119 intergenic not near genes chr3R 12880174 intergenic not near genes chr3R 12880228 intergenic not near genes chr3R_12_12880001 chr3R_12880001 RAL-208 1700 chr3R 12920154 12920182 chr3R 12925357 12925385 copia 7 5203 2.0 4.0 3.0 1.8 5231 chr3R 12920154 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925385 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-208 1701 chr3R 12943975 12944005 chr3R 12944062 12944091 5 87 3.0 4.0 3.5 1.1 116 chr3R 12943975 intergenic not near genes chr3R 12944033 intergenic not near genes chr3R 12944091 intergenic not near genes chr3R_5_12940001 chr3R_12940001 RAL-208 1702 chr3R 12947535 12947559 chr3R 12947615 12947639 13 79 5.0 4.0 4.5 2.4 104 chr3R 12947535 intergenic not near genes chr3R 12947587 intergenic not near genes chr3R 12947639 intergenic not near genes chr3R_13_12945001 chr3R_12945001 RAL-208 1703 chr3R 12948359 12948391 chr3R 12948447 12948479 17 88 3.0 2.5 2.8 4.5 120 chr3R 12948359 intergenic not near genes chr3R 12948419 intergenic not near genes chr3R 12948479 intergenic not near genes chr3R_17_12945001 chr3R_12945001 RAL-208 1704 chr3R 12972555 12972582 chr3R 12972694 12972721 16 139 0.5 0.5 0.5 10.7 166 chr3R 12972555 intron CG7381 - chr3R 12972638 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_16_12970001 chr3R_12970001 RAL-208 1705 chr3R 13059963 13059968 chr3R 13060158 13060163 6 195 0.5 2.0 1.2 2.7 200 chr3R 13059963 intron sim + chr3R 13060063 intron sim + chr3R 13060163 intron sim + chr3R_6_13060001 chr3R_13060001 RAL-208 1706 chr3R 13061882 13061906 chr3R 13061977 13062001 12 94 5.0 3.0 4.0 2.4 119 chr3R 13061882 intron sim + chr3R 13061942 intron sim + chr3R 13062001 intron sim + chr3R_12_13060001 chr3R_13060001 RAL-208 1707 chr3R 13075360 13075369 chr3R 13075441 13075449 6 81 4.5 1.0 2.8 1.6 89 chr3R 13075360 intron sim + chr3R 13075404 intron sim + chr3R 13075449 intron sim + chr3R_6_13075001 chr3R_13075001 RAL-208 1708 chr3R 13120772 13120801 chr3R 13120849 13120878 5 77 1.5 1.0 1.2 2.3 106 chr3R 13120772 intron timeout + chr3R 13120825 intron timeout + chr3R 13120878 intron timeout + chr3R_5_13120001 chr3R_13120001 RAL-208 1709 chr3R 13135826 13135858 chr3R 13138001 13138033 pogo 9 2175 2.0 2.0 2.0 3.0 2207 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138033 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_9_13135001 chr3R_13135001 RAL-208 1710 chr3R 13143043 13143052 chr3R 13148617 13148624 mdg3 4 5574 6.5 5.0 5.8 0.6 5581 chr3R 13143043 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145834 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148624 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-208 1711 chr3R 13195950 13195984 chr3R 13196045 13196078 17 94 2.5 1.5 2.0 5.7 128 chr3R 13195950 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196078 intergenic not near genes chr3R_17_13195001 chr3R_13195001 RAL-208 1712 chr3R 7773344 7773344 chr3R 13217322 13217329 5 5443979 17.5 25.0 21.2 0.2 5443985 chr3R 7773344 intergenic not near genes chr3R 10495336 intergenic not near genes chr3R 13217329 intergenic not near genes chr3R_5_10495001 chr3R_10495001 RAL-208 1713 chr3R 13241390 13241416 chr3R 13241544 13241570 13 153 3.0 4.0 3.5 2.9 180 chr3R 13241390 intron Ace - chr3R 13241480 intron Ace - chr3R 13241570 intron Ace - chr3R_13_13240001 chr3R_13240001 RAL-208 1714 chr3R 13328462 13328478 chr3R 13328564 13328581 4 103 0.0 5.0 2.5 1.1 119 chr3R 13328462 intergenic not near genes chr3R 13328522 intergenic not near genes chr3R 13328581 intergenic PK2-R2 - chr3R_4_13325001 chr3R_13325001 RAL-208 1715 chr3R 13378848 13378865 chr3R 13378939 13378956 4 90 1.0 3.0 2.0 1.3 108 chr3R 13378848 intron CG9813 - chr3R 13378902 intron CG9813 - chr3R 13378956 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-208 1716 chr3R 13420977 13420992 chr3R 13421071 13421087 5 95 2.5 8.0 5.2 0.8 110 chr3R 13420977 exon Ir87a + chr3R 13421032 exon Ir87a + chr3R 13421087 exon Ir87a + chr3R_5_13420001 chr3R_13420001 RAL-208 1717 chr3R 13435387 13435414 chr3R 13435562 13435589 19 175 6.0 3.5 4.8 3.3 202 chr3R 13435387 intergenic yrt - chr3R 13435488 intergenic not near genes chr3R 13435589 intergenic not near genes chr3R_19_13435001 chr3R_13435001 RAL-208 1718 chr3R 13439581 13439601 chr3R 13439661 13439680 7 80 1.5 1.0 1.2 3.2 99 chr3R 13439581 intergenic CR42756 - chr3R 13439630 intergenic CR42756 - chr3R 13439680 intergenic CR42756 - chr3R_7_13435001 chr3R_13435001 RAL-208 1719 chr3R 13456368 13456403 chr3R 13456457 13456492 12 89 2.5 4.0 3.2 2.9 124 chr3R 13456368 intron,intron CG14372 +,CR17025 - chr3R 13456430 intron,intron CG14372 +,CR17025 - chr3R 13456492 intron,intron CG14372 +,CR17025 - chr3R_12_13455001 chr3R_13455001 RAL-208 1720 chr3R 13470853 13470877 chr3R 13471182 13471206 9 329 1.0 3.0 2.0 3.0 353 chr3R 13470853 intergenic not near genes chr3R 13471030 intergenic not near genes chr3R 13471206 intergenic not near genes chr3R_9_13470001 chr3R_13470001 RAL-208 1721 chr3R 13505854 13505863 chr3R 13505930 13505938 5 75 6.0 3.0 4.5 0.9 84 chr3R 13505854 intergenic not near genes chr3R 13505896 intergenic not near genes chr3R 13505938 intergenic not near genes chr3R_5_13505001 chr3R_13505001 RAL-208 1722 chr3R 13598086 13598113 chr3R 13598162 13598191 7 76 1.5 4.0 2.8 1.8 105 chr3R 13598086 intergenic not near genes chr3R 13598138 intergenic not near genes chr3R 13598191 intergenic not near genes chr3R_7_13595001 chr3R_13595001 RAL-208 1723 chr3R 13603055 13603074 chr3R 13603146 13603165 6 91 2.5 5.5 4.0 1.2 110 chr3R 13603055 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603165 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-208 1724 chr3R 13672944 13672973 chr3R 13673022 13673051 19 78 1.5 3.5 2.5 5.4 107 chr3R 13672944 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673051 intron Task6 - chr3R_19_13670001 chr3R_13670001 RAL-208 1725 chr3R 13782051 13782084 chr3R 13782132 13782164 8 81 2.0 5.5 3.8 1.7 113 chr3R 13782051 exon CG9286 + chr3R 13782108 intergenic CG9286 +,Dip-B + chr3R 13782164 intergenic CG9286 +,Dip-B + chr3R_8_13780001 chr3R_13780001 RAL-208 1726 chr3R 13803900 13803905 chr3R 13804120 13804125 5 220 4.5 0.0 2.2 1.6 225 chr3R 13803900 intergenic not near genes chr3R 13804012 intergenic not near genes chr3R 13804125 intergenic not near genes chr3R_5_13800001 chr3R_13800001 RAL-208 1727 chr3R 13824204 13824213 chr3R 13824280 13824289 7 76 3.5 9.5 6.5 0.9 85 chr3R 13824204 intergenic not near genes chr3R 13824246 intergenic not near genes chr3R 13824289 intergenic not near genes chr3R_7_13820001 chr3R_13820001 RAL-208 1728 chr3R 13863678 13863709 chr3R 13863766 13863797 8 87 5.0 5.5 5.2 1.3 119 chr3R 13863678 intergenic not near genes chr3R 13863738 intergenic not near genes chr3R 13863797 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-208 1729 chr3R 13880550 13880574 chr3R 13880671 13880695 11 121 3.0 2.5 2.8 2.9 145 chr3R 13880550 intergenic not near genes chr3R 13880622 intergenic not near genes chr3R 13880695 intergenic not near genes chr3R_11_13880001 chr3R_13880001 RAL-208 1730 chr3R 13935299 13935315 chr3R 13935377 13935387 7 77 8.0 3.5 5.8 1.0 88 chr3R 13935299 intergenic not near genes chr3R 13935343 intergenic not near genes chr3R 13935387 intergenic not near genes chr3R_7_13935001 chr3R_13935001 RAL-208 1731 chr3R 13948228 13948257 chr3R 13948306 13948335 13 78 0.5 2.5 1.5 5.2 107 chr3R 13948228 intergenic CG31517 + chr3R 13948282 intergenic CG31517 + chr3R 13948335 intergenic CG31517 + chr3R_13_13945001 chr3R_13945001 RAL-208 1732 chr3R 14021655 14021680 chr3R 14023470 14023497 S-element 8 1817 3.0 3.0 3.0 2.0 1842 chr3R 14021655 intron rdx - chr3R 14022576 intron rdx - chr3R 14023497 intron rdx - chr3R_8_14020001 chr3R_14020001 RAL-208 1733 chr3R 14058127 14058156 chr3R 14058247 14058276 13 120 2.0 5.0 3.5 2.9 149 chr3R 14058127 intron foxo + chr3R 14058202 intron foxo + chr3R 14058276 intron foxo + chr3R_13_14055001 chr3R_14055001 RAL-208 1734 chr3R 14067142 14067155 chr3R 14067221 14067234 5 78 1.0 2.0 1.5 2.0 92 chr3R 14067142 exon foxo + chr3R 14067188 intron foxo + chr3R 14067234 intron foxo + chr3R_5_14065001 chr3R_14065001 RAL-208 1735 chr3R 14083402 14083435 chr3R 14083503 14083536 11 101 0.0 0.0 0.0 11.0 134 chr3R 14083402 intron foxo + chr3R 14083469 intron foxo + chr3R 14083536 intron foxo + chr3R_11_14080001 chr3R_14080001 RAL-208 1736 chr3R 14180810 14180839 chr3R 14185575 14185604 F-element 15 4765 0.0 1.0 0.5 10.0 4794 chr3R 14180810 intron Dop1R1 - chr3R 14183207 intron Dop1R1 - chr3R 14185604 intron Dop1R1 - chr3R_15_14180001 chr3R_14180001 RAL-208 1737 chr3R 14194459 14194460 chr3R 14203593 14203594 roo 4 9134 2.5 1.5 2.0 1.3 9135 chr3R 14194459 intron Dop1R1 - chr3R 14199026 intron Dop1R1 - chr3R 14203594 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-208 1738 chr3R 14226992 14227002 chr3R 14227086 14227098 7 96 4.0 1.5 2.8 1.8 106 chr3R 14226992 intergenic CG9631 - chr3R 14227045 intergenic CG9631 - chr3R 14227098 intergenic CG9631 - chr3R_7_14225001 chr3R_14225001 RAL-208 1739 chr3R 14246390 14246417 chr3R 14247886 14247913 jockey 12 1496 1.5 1.5 1.5 4.8 1523 chr3R 14246390 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_12_14245001 chr3R_14245001 RAL-208 1740 chr3R 14346028 14346040 chr3R 14346191 14346206 5 165 12.0 3.5 7.8 0.6 178 chr3R 14346028 intron NK7.1 - chr3R 14346117 intron NK7.1 - chr3R 14346206 intron NK7.1 - chr3R_5_14345001 chr3R_14345001 RAL-208 1741 chr3R 14426047 14426072 chr3R 14426151 14426176 4 104 5.5 2.5 4.0 0.8 129 chr3R 14426047 intron cv-c - chr3R 14426112 intron cv-c - chr3R 14426176 intron cv-c - chr3R_4_14425001 chr3R_14425001 RAL-208 1742 chr3R 14440728 14440743 chr3R 14440804 14440819 5 76 4.0 6.0 5.0 0.8 91 chr3R 14440728 intron cv-c - chr3R 14440774 intron cv-c - chr3R 14440819 intron cv-c - chr3R_5_14440001 chr3R_14440001 RAL-208 1743 chr3R 14453318 14453337 chr3R 14453459 14453478 16 141 3.0 2.5 2.8 4.2 160 chr3R 14453318 intron cv-c - chr3R 14453398 intron cv-c - chr3R 14453478 intron cv-c - chr3R_16_14450001 chr3R_14450001 RAL-208 1744 chr3R 14497404 14497437 chr3R 14497485 14497518 11 81 3.0 0.0 1.5 4.4 114 chr3R 14497404 intron CR44177 + chr3R 14497461 intron CR44177 + chr3R 14497518 intron CR44177 + chr3R_11_14495001 chr3R_14495001 RAL-208 1745 chr3R 14514476 14514513 chr3R 14514561 14514598 9 85 2.0 3.5 2.8 2.4 122 chr3R 14514476 3` UTR Pde6 - chr3R 14514537 3` UTR Pde6 - chr3R 14514598 3` UTR Pde6 - chr3R_9_14510001 chr3R_14510001 RAL-208 1746 chr3R 14548579 14548602 chr3R 14548667 14548690 5 88 3.5 3.0 3.2 1.2 111 chr3R 14548579 intron Pde6 - chr3R 14548634 intron Pde6 - chr3R 14548690 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-208 1747 chr3R 14577957 14577977 chr3R 14578073 14578093 8 116 2.0 5.0 3.5 1.8 136 chr3R 14577957 intron stumps + chr3R 14578025 intron stumps + chr3R 14578093 intron stumps + chr3R_8_14575001 chr3R_14575001 RAL-208 1748 chr3R 14589061 14589069 chr3R 14589162 14589170 4 101 2.5 5.5 4.0 0.8 109 chr3R 14589061 intron stumps + chr3R 14589116 intron stumps + chr3R 14589170 intron stumps + chr3R_4_14585001 chr3R_14585001 RAL-208 1749 chr3R 14662314 14662335 chr3R 14662395 14662416 14 81 3.0 2.0 2.5 4.0 102 chr3R 14662314 exon Rad17 - chr3R 14662365 intron Rad17 - chr3R 14662416 exon Rad17 - chr3R_14_14660001 chr3R_14660001 RAL-208 1750 chr3R 14686234 14686258 chr3R 14686614 14686638 6 380 2.0 3.5 2.8 1.6 404 chr3R 14686234 intron Meltrin - chr3R 14686436 intron Meltrin - chr3R 14686638 intron Meltrin - chr3R_6_14685001 chr3R_14685001 RAL-208 1751 chr3R 14704385 14704412 chr3R 14704462 14704489 9 77 4.5 3.0 3.8 1.9 104 chr3R 14704385 intron kibra - chr3R 14704437 intron kibra - chr3R 14704489 intron kibra - chr3R_9_14700001 chr3R_14700001 RAL-208 1752 chr3R 14821614 14821647 chr3R 14821763 14821796 9 149 3.0 5.0 4.0 1.8 182 chr3R 14821614 intron btsz - chr3R 14821705 intron btsz - chr3R 14821796 intron btsz - chr3R_9_14820001 chr3R_14820001 RAL-208 1753 chr3R 14876353 14876371 chr3R 14876713 14876734 6 362 4.5 3.0 3.8 1.2 381 chr3R 14876353 intergenic not near genes chr3R 14876544 intergenic not near genes chr3R 14876734 intergenic not near genes chr3R_6_14875001 chr3R_14875001 RAL-208 1754 chr3R 14948596 14948623 chr3R 14948676 14948703 7 79 0.5 1.5 1.0 3.5 107 chr3R 14948596 intergenic not near genes chr3R 14948650 intergenic not near genes chr3R 14948703 intergenic not near genes chr3R_7_14945001 chr3R_14945001 RAL-208 1755 chr3R 14990570 14990589 chr3R 14990848 14990867 7 277 3.0 4.5 3.8 1.5 297 chr3R 14990570 intergenic not near genes chr3R 14990718 intergenic not near genes chr3R 14990867 intergenic not near genes chr3R_7_14990001 chr3R_14990001 RAL-208 1756 chr3R 15041420 15041456 chr3R 15045186 15045224 Doc 7 3768 1.0 1.5 1.2 3.2 3804 chr3R 15041420 intergenic not near genes chr3R 15043322 intergenic not near genes chr3R 15045224 intergenic not near genes chr3R_7_15040001 chr3R_15040001 RAL-208 1757 chr3R 1219386 1219386 chr3R 15078288 15078290 6 13858902 19.5 6.5 13.0 0.4 13858904 chr3R 1219386 intergenic not near genes chr3R 8148838 3` UTR grn - chr3R 15078290 intergenic CG6974 - chr3R_6_8145001 chr3R_8145001 RAL-208 1758 chr3R 15079811 15079830 chr3R 15080052 15080071 pogo 8 241 2.5 3.0 2.8 2.1 260 chr3R 15079811 3` UTR CG6966 - chr3R 15079941 3` UTR CG6966 - chr3R 15080071 3` UTR CG6966 - chr3R_8_15075001 chr3R_15075001 RAL-208 1759 chr3R 15102523 15102531 chr3R 15109777 15109785 412 9 7254 0.0 2.0 1.0 4.5 7262 chr3R 15102523 intron CG42788 - chr3R 15106154 intron CG42788 - chr3R 15109785 intron CG42788 - chr3R_9_15105001 chr3R_15105001 RAL-208 1760 chr3R 15114914 15114925 chr3R 15114990 15115001 5 76 2.0 2.5 2.2 1.6 87 chr3R 15114914 intron CG42788 - chr3R 15114958 intron CG42788 - chr3R 15115001 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-208 1761 chr3R 15127790 15127807 chr3R 15127870 15127887 6 80 0.0 5.5 2.8 1.6 97 chr3R 15127790 intron CG42788 - chr3R 15127838 intron CG42788 - chr3R 15127887 intron CG42788 - chr3R_6_15125001 chr3R_15125001 RAL-208 1762 chr3R 15132056 15132078 chr3R 15135116 15135137 Juan 12 3060 5.5 9.5 7.5 1.4 3081 chr3R 15132056 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135137 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 RAL-208 1763 chr3R 15143930 15143950 chr3R 15144112 15144133 7 183 3.5 5.5 4.5 1.3 203 chr3R 15143930 intron GlyS - chr3R 15144032 intron GlyS - chr3R 15144133 intron GlyS - chr3R_7_15140001 chr3R_15140001 RAL-208 1764 chr3R 15162549 15162561 chr3R 15167317 15167329 F-element 9 4768 2.5 0.5 1.5 3.6 4780 chr3R 15162549 intron Gyc88E + chr3R 15164939 intron Gyc88E + chr3R 15167329 intron Gyc88E + chr3R_9_15160001 chr3R_15160001 RAL-208 1765 chr3R 15167805 15167836 chr3R 15167962 15167990 13 156 3.5 3.5 3.5 2.9 185 chr3R 15167805 intron Gyc88E + chr3R 15167898 intron Gyc88E + chr3R 15167990 intron Gyc88E + chr3R_13_15165001 chr3R_15165001 RAL-208 1766 chr3R 15169329 15169340 chr3R 15169516 15169527 9 188 20.5 13.5 17.0 0.5 198 chr3R 15169329 intron Gyc88E + chr3R 15169428 intron Gyc88E + chr3R 15169527 intron Gyc88E + chr3R_9_15165001 chr3R_15165001 RAL-208 1767 chr3R 15190646 15190682 chr3R 15190771 15190807 10 125 4.0 1.0 2.5 2.9 161 chr3R 15190646 3` UTR Gyc88E + chr3R 15190726 3` UTR Gyc88E + chr3R 15190807 3` UTR Gyc88E + chr3R_10_15190001 chr3R_15190001 RAL-208 1768 chr3R 15232061 15232083 chr3R 15232151 15232173 13 90 1.5 3.5 2.5 3.7 112 chr3R 15232061 intergenic tefu -,CG34316 + chr3R 15232117 intergenic tefu -,CG34316 + chr3R 15232173 intergenic tefu -,CG34316 + chr3R_13_15230001 chr3R_15230001 RAL-208 1769 chr3R 15257564 15257594 chr3R 15257643 15257669 19 78 1.5 7.5 4.5 3.5 105 chr3R 15257564 3` UTR CG42404 + chr3R 15257616 3` UTR CG42404 + chr3R 15257669 3` UTR CG42404 + chr3R_19_15255001 chr3R_15255001 RAL-208 1770 chr3R 15406134 15406171 chr3R 15406215 15406251 10 81 19.0 18.5 18.8 0.5 117 chr3R 15406134 intron CG6125 - chr3R 15406192 intron CG6125 - chr3R 15406251 intron CG6125 - chr3R_10_15405001 chr3R_15405001 RAL-208 1771 chr3R 15401210 15401241 chr3R 15407872 15407903 8 6662 23.5 25.0 24.2 0.3 6693 chr3R 15401210 3` UTR Rbp + chr3R 15404556 intron CG6125 - chr3R 15407903 intergenic not near genes chr3R_8_15400001 chr3R_15400001 RAL-208 1772 chr3R 15416248 15416282 chr3R 15416328 15416362 7 79 5.0 3.5 4.2 1.3 114 chr3R 15416248 3` UTR Atx2 + chr3R 15416305 3` UTR Atx2 + chr3R 15416362 3` UTR Atx2 + chr3R_7_15415001 chr3R_15415001 RAL-208 1773 chr3R 15439570 15439583 chr3R 15439710 15439723 6 140 3.5 0.0 1.8 2.1 153 chr3R 15439570 intergenic Act88F + chr3R 15439646 intergenic Act88F + chr3R 15439723 intergenic Act88F + chr3R_6_15435001 chr3R_15435001 RAL-208 1774 chr3R 15601163 15601194 chr3R 15608685 15608714 412 10 7521 2.0 1.5 1.8 3.6 7551 chr3R 15601163 intergenic not near genes chr3R 15604938 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-208 1775 chr3R 15618729 15618764 chr3R 15626203 15626238 blood 10 7474 5.0 3.5 4.2 1.9 7509 chr3R 15618729 intergenic not near genes chr3R 15622484 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_10_15620001 chr3R_15620001 RAL-208 1776 chr3R 15646790 15646799 chr3R 15646873 15646882 6 83 0.0 5.5 2.8 1.6 92 chr3R 15646790 intergenic not near genes chr3R 15646836 intergenic not near genes chr3R 15646882 intergenic not near genes chr3R_6_15645001 chr3R_15645001 RAL-208 1777 chr3R 15680632 15680655 chr3R 15681109 15681132 8 477 1.5 5.5 3.5 1.8 500 chr3R 15680632 intron pxb + chr3R 15680882 intron pxb + chr3R 15681132 intron pxb + chr3R_8_15680001 chr3R_15680001 RAL-208 1778 chr3R 15691183 15691329 chr3R 15691288 15691416 12 92 0.0 0.0 0.0 12.0 233 chr3R 15691183 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691416 intergenic not near genes chr3R_12_15690001 chr3R_15690001 RAL-208 1779 chr3R 15702867 15702891 chr3R 15703056 15703081 9 190 0.0 3.0 1.5 3.6 214 chr3R 15702867 intergenic not near genes chr3R 15702974 intergenic not near genes chr3R 15703081 intergenic not near genes chr3R_9_15700001 chr3R_15700001 RAL-208 1780 chr3R 15734171 15734200 chr3R 15734261 15734291 9 91 3.0 2.5 2.8 2.4 120 chr3R 15734171 intergenic not near genes chr3R 15734231 intergenic not near genes chr3R 15734291 intergenic not near genes chr3R_9_15730001 chr3R_15730001 RAL-208 1781 chr3R 15790147 15790275 chr3R 15790255 15790393 7 114 11.0 13.0 12.0 0.5 246 chr3R 15790147 exon c(3)G - chr3R 15790270 exon c(3)G - chr3R 15790393 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-208 1782 chr3R 15844108 15844137 chr3R 15844206 15844235 11 98 1.5 0.0 0.8 6.1 127 chr3R 15844108 3` UTR spn-E + chr3R 15844172 3` UTR spn-E + chr3R 15844235 3` UTR spn-E + chr3R_11_15840001 chr3R_15840001 RAL-208 1783 chr3R 15871410 15871439 chr3R 15871509 15871535 13 98 1.0 4.5 2.8 3.4 125 chr3R 15871410 intron CG31183 - chr3R 15871472 intron CG31183 - chr3R 15871535 intron CG31183 - chr3R_13_15870001 chr3R_15870001 RAL-208 1784 chr3R 15878089 15878100 chr3R 15878177 15878187 6 88 2.5 5.0 3.8 1.2 98 chr3R 15878089 intergenic not near genes chr3R 15878138 intergenic not near genes chr3R 15878187 intergenic not near genes chr3R_6_15875001 chr3R_15875001 RAL-208 1785 chr3R 15892658 15892686 chr3R 15892739 15892767 21 80 3.0 4.0 3.5 4.7 109 chr3R 15892658 intron CG14877 - chr3R 15892712 intron CG14877 - chr3R 15892767 intron CG14877 - chr3R_21_15890001 chr3R_15890001 RAL-208 1786 chr3R 15942671 15942692 chr3R 15943050 15943071 7 379 0.0 3.5 1.8 2.5 400 chr3R 15942671 intron Sap47 + chr3R 15942871 intron Sap47 + chr3R 15943071 intron Sap47 + chr3R_7_15940001 chr3R_15940001 RAL-208 1787 chr3R 16073437 16073475 chr3R 16073541 16073579 8 104 1.0 0.0 0.5 5.3 142 chr3R 16073437 intron Mhcl - chr3R 16073508 intron Mhcl - chr3R 16073579 intron Mhcl - chr3R_8_16070001 chr3R_16070001 RAL-208 1788 chr3R 16153649 16153655 chr3R 16153735 16153741 4 86 4.0 8.5 6.2 0.6 92 chr3R 16153649 intergenic not near genes chr3R 16153695 intergenic not near genes chr3R 16153741 intergenic not near genes chr3R_4_16150001 chr3R_16150001 RAL-208 1789 chr3R 16225092 16225114 chr3R 16225177 16225199 10 85 2.0 4.5 3.2 2.4 107 chr3R 16225092 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225199 intergenic tara + chr3R_10_16225001 chr3R_16225001 RAL-208 1790 chr3R 16275586 16275611 chr3R 16275901 16275922 6 314 3.0 2.5 2.8 1.6 336 chr3R 16275586 intron gish + chr3R 16275754 intron gish + chr3R 16275922 intron gish + chr3R_6_16275001 chr3R_16275001 RAL-208 1791 chr3R 16374298 16374326 chr3R 16374415 16374442 12 117 2.0 1.0 1.5 4.8 144 chr3R 16374298 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374442 3` UTR ss - chr3R_12_16370001 chr3R_16370001 RAL-208 1792 chr3R 16445325 16445350 chr3R 16445419 16445446 6 96 1.0 1.5 1.2 2.7 121 chr3R 16445325 3` UTR Pak3 - chr3R 16445386 3` UTR Pak3 - chr3R 16445446 3` UTR Pak3 - chr3R_6_16445001 chr3R_16445001 RAL-208 1793 chr3R 16471224 16471254 chr3R 16471322 16471352 8 98 4.5 4.0 4.2 1.5 128 chr3R 16471224 exon CSN5 + chr3R 16471288 3` UTR CSN5 + chr3R 16471352 3` UTR CSN5 + chr3R_8_16470001 chr3R_16470001 RAL-208 1794 chr3R 16472579 16472594 chr3R 16472656 16472670 7 75 8.5 7.5 8.0 0.8 91 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472670 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-208 1795 chr3R 16550043 16550071 chr3R 16550126 16550155 4 83 1.5 6.0 3.8 0.8 112 chr3R 16550043 intron CG42342 + chr3R 16550099 intron CG42342 + chr3R 16550155 intron CG42342 + chr3R_4_16550001 chr3R_16550001 RAL-208 1796 chr3R 16732150 16732184 chr3R 16732245 16732280 9 96 1.0 1.5 1.2 4.1 130 chr3R 16732150 intron Ubx - chr3R 16732215 intron Ubx - chr3R 16732280 intron Ubx - chr3R_9_16730001 chr3R_16730001 RAL-208 1797 chr3R 16734880 16734892 chr3R 16734963 16734975 6 83 0.0 3.5 1.8 2.1 95 chr3R 16734880 intergenic Ubx - chr3R 16734928 intergenic not near genes chr3R 16734975 intergenic not near genes chr3R_6_16730001 chr3R_16730001 RAL-208 1798 chr3R 16756318 16756354 chr3R 16762509 16762545 diver 13 6191 2.0 0.0 1.0 6.5 6227 chr3R 16756318 intron bxd - chr3R 16759432 intron bxd - chr3R 16762545 intron bxd - chr3R_13_16755001 chr3R_16755001 RAL-208 1799 chr3R 16836961 16836988 chr3R 16837290 16837317 6 329 3.0 3.0 3.0 1.5 356 chr3R 16836961 intron iab-8 - chr3R 16837139 intron iab-8 - chr3R 16837317 intron iab-8 - chr3R_6_16835001 chr3R_16835001 RAL-208 1800 chr3R 16846713 16846743 chr3R 16846798 16846828 7 85 1.5 2.0 1.8 2.5 115 chr3R 16846713 intron iab-8 - chr3R 16846770 intron iab-8 - chr3R 16846828 intron iab-8 - chr3R_7_16845001 chr3R_16845001 RAL-208 1801 chr3R 16946735 16946757 chr3R 16946814 16946836 10 79 10.0 3.5 6.8 1.3 101 chr3R 16946735 intron Abd-B - chr3R 16946786 intron Abd-B - chr3R 16946836 intron Abd-B - chr3R_10_16945001 chr3R_16945001 RAL-208 1802 chr3R 17121521 17121556 chr3R 17121716 17121751 7 195 3.5 2.5 3.0 1.8 230 chr3R 17121521 intron cher - chr3R 17121636 intron,exon cher -,CG42779 + chr3R 17121751 intron,exon cher -,CG42779 + chr3R_7_17120001 chr3R_17120001 RAL-208 1803 chr3R 17294667 17294686 chr3R 17295095 17295114 BS 6 428 5.5 0.0 2.8 1.6 447 chr3R 17294667 intergenic not near genes chr3R 17294890 intergenic not near genes chr3R 17295114 intergenic not near genes chr3R_6_17290001 chr3R_17290001 RAL-208 1804 chr3R 17346692 17346714 chr3R 17348255 17348276 F-element 9 1563 3.5 4.5 4.0 1.8 1584 chr3R 17346692 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348276 intron beat-IIa - chr3R_9_17345001 chr3R_17345001 RAL-208 1805 chr3R 17452666 17452670 chr3R 17452742 17452745 4 76 1.0 0.5 0.8 2.2 79 chr3R 17452666 intergenic not near genes chr3R 17452706 intergenic not near genes chr3R 17452745 intergenic not near genes chr3R_4_17450001 chr3R_17450001 RAL-208 1806 chr3R 17461200 17461232 chr3R 17461282 17461314 11 82 1.0 2.5 1.8 3.9 114 chr3R 17461200 intergenic not near genes chr3R 17461257 intergenic not near genes chr3R 17461314 intergenic not near genes chr3R_11_17460001 chr3R_17460001 RAL-208 1807 chr3R 17498856 17498866 chr3R 17498994 17499008 4 141 5.5 2.5 4.0 0.8 152 chr3R 17498856 intron Dscam3 - chr3R 17498932 intron Dscam3 - chr3R 17499008 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-208 1808 chr3R 17521577 17521590 chr3R 17521736 17521750 6 160 0.5 9.5 5.0 1.0 173 chr3R 17521577 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521750 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-208 1809 chr3R 17524928 17524930 chr3R 17525008 17525010 4 80 0.0 7.5 3.8 0.8 82 chr3R 17524928 intergenic not near genes chr3R 17524969 intergenic not near genes chr3R 17525010 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-208 1810 chr3R 17591292 17591318 chr3R 17591726 17591754 F-element 7 436 4.5 4.0 4.2 1.3 462 chr3R 17591292 intergenic not near genes chr3R 17591523 intergenic not near genes chr3R 17591754 intergenic not near genes chr3R_7_17590001 chr3R_17590001 RAL-208 1811 chr3R 17600106 17600129 chr3R 17600266 17600290 8 160 6.0 3.0 4.5 1.5 184 chr3R 17600106 intergenic not near genes chr3R 17600198 intergenic not near genes chr3R 17600290 intergenic not near genes chr3R_8_17600001 chr3R_17600001 RAL-208 1812 chr3R 17645703 17645721 chr3R 17645833 17645850 7 129 2.5 4.5 3.5 1.6 147 chr3R 17645703 intergenic CG43175 + chr3R 17645776 intergenic not near genes chr3R 17645850 intergenic not near genes chr3R_7_17645001 chr3R_17645001 RAL-208 1813 chr3R 17658468 17658493 chr3R 17658653 17658679 20 186 5.0 5.0 5.0 3.3 211 chr3R 17658468 intron CG14322 + chr3R 17658574 intron CG14322 + chr3R 17658679 intron CG14322 + chr3R_20_17655001 chr3R_17655001 RAL-208 1814 chr3R 17823209 17823233 chr3R 17823294 17823318 11 85 2.5 1.0 1.8 3.9 109 chr3R 17823209 intron tinc + chr3R 17823264 intron tinc + chr3R 17823318 intron tinc + chr3R_11_17820001 chr3R_17820001 RAL-208 1815 chr3R 17925866 17925889 chr3R 17927332 17927356 hobo 10 1467 2.5 9.5 6.0 1.4 1490 chr3R 17925866 intron cpo + chr3R 17926611 intron cpo + chr3R 17927356 intron cpo + chr3R_10_17925001 chr3R_17925001 RAL-208 1816 chr3R 17997130 17997136 chr3R 17997218 17997224 4 88 0.0 2.0 1.0 2.0 94 chr3R 17997130 intron cpo + chr3R 17997177 intron cpo + chr3R 17997224 intron cpo + chr3R_4_17995001 chr3R_17995001 RAL-208 1817 chr3R 18041758 18041772 chr3R 18041834 18041849 8 77 0.0 0.5 0.2 6.7 91 chr3R 18041758 intergenic not near genes chr3R 18041804 intergenic not near genes chr3R 18041849 intergenic not near genes chr3R_8_18040001 chr3R_18040001 RAL-208 1818 chr3R 18061597 18061610 chr3R 18063165 18063177 F-element 4 1568 3.5 8.0 5.8 0.6 1580 chr3R 18061597 intergenic not near genes chr3R 18062387 intergenic not near genes chr3R 18063177 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-208 1819 chr3R 18090004 18090035 chr3R 18090102 18090133 12 98 1.5 3.5 2.5 3.4 129 chr3R 18090004 intergenic not near genes chr3R 18090068 intergenic not near genes chr3R 18090133 intergenic not near genes chr3R_12_18090001 chr3R_18090001 RAL-208 1820 chr3R 18174712 18174722 chr3R 18174806 18174817 4 94 0.5 1.5 1.0 2.0 105 chr3R 18174712 intron PP2A-B' + chr3R 18174764 intron PP2A-B' + chr3R 18174817 intron PP2A-B' + chr3R_4_18170001 chr3R_18170001 RAL-208 1821 chr3R 18331781 18331785 chr3R 18333275 18333279 hopper2 7 1494 11.0 4.5 7.8 0.8 1498 chr3R 18331781 3` UTR CG15803 - chr3R 18332530 intron CG15803 - chr3R 18333279 3` UTR CG15803 - chr3R_7_18330001 chr3R_18330001 RAL-208 1822 chr3R 18338996 18339025 chr3R 18339100 18339129 14 104 2.0 1.5 1.8 5.0 133 chr3R 18338996 intron CG15803 - chr3R 18339062 intron CG15803 - chr3R 18339129 intron CG15803 - chr3R_14_18335001 chr3R_18335001 RAL-208 1823 chr3R 18472285 18472299 chr3R 18472385 18472400 5 101 1.5 1.5 1.5 2.0 115 chr3R 18472285 intron fru - chr3R 18472342 intron fru - chr3R 18472400 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-208 1824 chr3R 18485433 18485449 chr3R 18485535 18485550 7 102 1.0 1.0 1.0 3.5 117 chr3R 18485433 intron fru - chr3R 18485492 intron fru - chr3R 18485550 intron fru - chr3R_7_18485001 chr3R_18485001 RAL-208 1825 chr3R 18528373 18528384 chr3R 18528460 18528471 5 86 3.0 2.5 2.8 1.3 98 chr3R 18528373 intron fru - chr3R 18528422 intron fru - chr3R 18528471 intron fru - chr3R_5_18525001 chr3R_18525001 RAL-208 1826 chr3R 18615377 18615407 chr3R 18615466 18615496 9 89 3.0 2.5 2.8 2.4 119 chr3R 18615377 intron,intron qin +,CG14304 - chr3R 18615436 intron,intron qin +,CG14304 - chr3R 18615496 intron,intron qin +,CG14304 - chr3R_9_18615001 chr3R_18615001 RAL-208 1827 chr3R 18629026 18629036 chr3R 18629116 18629126 6 89 1.0 1.0 1.0 3.0 100 chr3R 18629026 intron qin + chr3R 18629076 intron qin + chr3R 18629126 intron qin + chr3R_6_18625001 chr3R_18625001 RAL-208 1828 chr3R 18670380 18670413 chr3R 18670473 18670506 7 93 1.5 3.0 2.2 2.2 126 chr3R 18670380 intron CG7702 + chr3R 18670443 intron CG7702 + chr3R 18670506 intron CG7702 + chr3R_7_18670001 chr3R_18670001 RAL-208 1829 chr3R 18701316 18701348 chr3R 18701458 18701490 10 142 1.5 5.5 3.5 2.2 174 chr3R 18701316 intergenic not near genes chr3R 18701403 intergenic not near genes chr3R 18701490 intergenic not near genes chr3R_10_18700001 chr3R_18700001 RAL-208 1830 chr3R 18720305 18720329 chr3R 18720401 18720425 7 96 6.5 3.0 4.8 1.2 120 chr3R 18720305 intron Cha + chr3R 18720365 intron Cha + chr3R 18720425 intron Cha + chr3R_7_18720001 chr3R_18720001 RAL-208 1831 chr3R 18770298 18770317 chr3R 18770379 18770398 7 81 2.5 4.0 3.2 1.7 100 chr3R 18770298 intron CG7720 - chr3R 18770348 intron CG7720 - chr3R 18770398 intron CG7720 - chr3R_7_18770001 chr3R_18770001 RAL-208 1832 chr3R 18781703 18781726 chr3R 18781778 18781802 8 75 3.0 5.5 4.2 1.5 99 chr3R 18781703 intron CG7720 - chr3R 18781752 intron CG7720 - chr3R 18781802 intron CG7720 - chr3R_8_18780001 chr3R_18780001 RAL-208 1833 chr3R 18792804 18792818 chr3R 18792887 18792900 4 83 3.5 0.0 1.8 1.4 96 chr3R 18792804 intron CG7720 - chr3R 18792852 intron CG7720 - chr3R 18792900 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-208 1834 chr3R 18812074 18812104 chr3R 18812152 18812182 8 78 3.0 5.5 4.2 1.5 108 chr3R 18812074 intron CG18208 - chr3R 18812128 intron CG18208 - chr3R 18812182 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-208 1835 chr3R 18817513 18817538 chr3R 18817611 18817636 4 98 0.0 0.5 0.2 3.3 123 chr3R 18817513 intron CG18208 - chr3R 18817574 intron CG18208 - chr3R 18817636 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-208 1836 chr3R 18839816 18839835 chr3R 18839896 18839914 6 82 4.5 4.5 4.5 1.1 98 chr3R 18839816 intron CG18208 - chr3R 18839865 intron CG18208 - chr3R 18839914 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-208 1837 chr3R 18863505 18863528 chr3R 18863591 18863613 17 85 3.5 5.5 4.5 3.1 108 chr3R 18863505 intergenic not near genes chr3R 18863559 intergenic not near genes chr3R 18863613 intergenic not near genes chr3R_17_18860001 chr3R_18860001 RAL-208 1838 chr3R 18899317 18899334 chr3R 18899399 18899417 8 83 3.0 4.0 3.5 1.8 100 chr3R 18899317 3` UTR CG14297 + chr3R 18899367 intergenic CG14297 +,Rh2 + chr3R 18899417 intergenic Rh2 +,CG14297 + chr3R_8_18895001 chr3R_18895001 RAL-208 1839 chr3R 19033927 19033961 chr3R 19034003 19034039 10 78 1.0 2.5 1.8 3.6 112 chr3R 19033927 intron CG6026 + chr3R 19033983 intron CG6026 + chr3R 19034039 intron CG6026 + chr3R_10_19030001 chr3R_19030001 RAL-208 1840 chr3R 19079577 19079604 chr3R 19079662 19079689 6 85 1.5 1.0 1.2 2.7 112 chr3R 19079577 intron cdi - chr3R 19079633 intron cdi - chr3R 19079689 intron cdi - chr3R_6_19075001 chr3R_19075001 RAL-208 1841 chr3R 19276930 19276944 chr3R 19277010 19277024 4 80 11.0 4.0 7.5 0.5 94 chr3R 19276930 intergenic not near genes chr3R 19276977 intergenic not near genes chr3R 19277024 intergenic not near genes chr3R_4_19275001 chr3R_19275001 RAL-208 1842 chr3R 19278752 19278787 chr3R 19278828 19278861 11 76 1.5 3.0 2.2 3.4 109 chr3R 19278752 intergenic CR44173 - chr3R 19278806 3` UTR CR44173 - chr3R 19278861 3` UTR CR44173 - chr3R_11_19275001 chr3R_19275001 RAL-208 1843 chr3R 19344666 19344700 chr3R 19344801 19344835 9 135 3.5 3.5 3.5 2.0 169 chr3R 19344666 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344835 intergenic not near genes chr3R_9_19340001 chr3R_19340001 RAL-208 1844 chr3R 19414607 19414612 chr3R 19414684 19414689 6 77 4.5 4.0 4.2 1.2 82 chr3R 19414607 intron CG31221 + chr3R 19414648 intron CG31221 + chr3R 19414689 intron CG31221 + chr3R_6_19410001 chr3R_19410001 RAL-208 1845 chr3R 19426076 19426100 chr3R 19426254 19426278 11 178 2.0 2.5 2.2 3.4 202 chr3R 19426076 intron CG31221 + chr3R 19426177 intron CG31221 + chr3R 19426278 intron CG31221 + chr3R_11_19425001 chr3R_19425001 RAL-208 1846 chr3R 19564992 19564994 chr3R 19565070 19565073 4 79 4.5 1.0 2.8 1.1 81 chr3R 19564992 intron Dys + chr3R 19565032 intron Dys + chr3R 19565073 intron Dys + chr3R_4_19565001 chr3R_19565001 RAL-208 1847 chr3R 19570307 19570336 chr3R 19570383 19570412 15 76 1.0 2.5 1.8 5.4 105 chr3R 19570307 intron Dys + chr3R 19570360 intron Dys + chr3R 19570412 intron Dys + chr3R_15_19570001 chr3R_19570001 RAL-208 1848 chr3R 19602577 19602594 chr3R 19602657 19602674 6 80 1.0 2.0 1.5 2.4 97 chr3R 19602577 exon CG7333 + chr3R 19602626 3` UTR CG7333 + chr3R 19602674 intergenic CG7333 + chr3R_6_19600001 chr3R_19600001 RAL-208 1849 chr3R 19633312 19633321 chr3R 19633398 19633407 5 85 1.5 3.0 2.2 1.6 95 chr3R 19633312 intergenic subdued - chr3R 19633360 intergenic subdued - chr3R 19633407 intergenic subdued - chr3R_5_19630001 chr3R_19630001 RAL-208 1850 chr3R 19659387 19659421 chr3R 19659480 19659513 8 93 2.0 1.0 1.5 3.2 126 chr3R 19659387 intergenic ort + chr3R 19659450 intergenic ort + chr3R 19659513 intergenic ort + chr3R_8_19655001 chr3R_19655001 RAL-208 1851 chr3R 19848284 19848291 chr3R 19848391 19848398 4 107 0.0 0.5 0.2 3.3 114 chr3R 19848284 intron CG4662 + chr3R 19848341 intron CG4662 + chr3R 19848398 intron CG4662 + chr3R_4_19845001 chr3R_19845001 RAL-208 1852 chr3R 19957274 19957300 chr3R 19957350 19957376 11 76 1.0 2.5 1.8 3.9 102 chr3R 19957274 intron Hs6st - chr3R 19957325 intron Hs6st - chr3R 19957376 intron Hs6st - chr3R_11_19955001 chr3R_19955001 RAL-208 1853 chr3R 19960403 19960434 chr3R 19960800 19960831 6 396 1.5 2.5 2.0 2.0 428 chr3R 19960403 intron Hs6st - chr3R 19960617 intron Hs6st - chr3R 19960831 intron Hs6st - chr3R_6_19960001 chr3R_19960001 RAL-208 1854 chr3R 20008821 20008852 chr3R 20008902 20008933 18 81 2.5 4.5 3.5 4.0 112 chr3R 20008821 intergenic MED25 +,Hs6st - chr3R 20008877 intergenic MED25 +,Hs6st - chr3R 20008933 intergenic MED25 +,Hs6st - chr3R_18_20005001 chr3R_20005001 RAL-208 1855 chr3R 20011478 20011490 chr3R 20012165 20012177 6 688 22.0 18.5 20.2 0.3 699 chr3R 20011478 exon MED25 + chr3R 20011828 3` UTR CG17190 - chr3R 20012177 exon CG17190 - chr3R_6_20010001 chr3R_20010001 RAL-208 1856 chr3R 20077039 20077069 chr3R 20077125 20077155 10 86 4.0 3.5 3.8 2.1 116 chr3R 20077039 intergenic not near genes chr3R 20077097 intergenic not near genes chr3R 20077155 intergenic not near genes chr3R_10_20075001 chr3R_20075001 RAL-208 1857 chr3R 20109544 20109570 chr3R 20114750 20114776 copia 10 5205 0.0 5.5 2.8 2.6 5232 chr3R 20109544 intergenic not near genes chr3R 20112160 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_10_20110001 chr3R_20110001 RAL-208 1858 chr3R 20156691 20156714 chr3R 20165861 20165884 roo 9 9170 7.0 3.5 5.2 1.5 9193 chr3R 20156691 intergenic not near genes chr3R 20161288 intergenic not near genes chr3R 20165884 intergenic not near genes chr3R_9_20160001 chr3R_20160001 RAL-208 1859 chr3R 20178543 20178553 chr3R 20178625 20178633 4 81 4.5 3.0 3.8 0.8 90 chr3R 20178543 intergenic not near genes chr3R 20178588 intergenic not near genes chr3R 20178633 intergenic not near genes chr3R_4_20175001 chr3R_20175001 RAL-208 1860 chr3R 20197791 20197810 chr3R 20197872 20197891 12 81 3.5 4.0 3.8 2.5 100 chr3R 20197791 intergenic not near genes chr3R 20197841 intergenic not near genes chr3R 20197891 intergenic not near genes chr3R_12_20195001 chr3R_20195001 RAL-208 1861 chr3R 20222260 20222284 chr3R 20222343 20222367 9 83 2.5 2.0 2.2 2.8 107 chr3R 20222260 intron Nlg4 + chr3R 20222314 intron Nlg4 + chr3R 20222367 intron Nlg4 + chr3R_9_20220001 chr3R_20220001 RAL-208 1862 chr3R 20242581 20242609 chr3R 20242684 20242712 15 103 3.0 5.5 4.2 2.9 131 chr3R 20242581 intron Nlg4 + chr3R 20242646 intron Nlg4 + chr3R 20242712 intron Nlg4 + chr3R_15_20240001 chr3R_20240001 RAL-208 1863 chr3R 20245283 20245300 chr3R 20248893 20248910 F-element 4 3610 0.0 1.0 0.5 2.7 3627 chr3R 20245283 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248910 intergenic not near genes chr3R_4_20245001 chr3R_20245001 RAL-208 1864 chr3R 20252218 20252252 chr3R 20252296 20252330 7 78 3.5 0.0 1.8 2.5 112 chr3R 20252218 intergenic not near genes chr3R 20252274 intergenic cic + chr3R 20252330 intergenic cic + chr3R_7_20250001 chr3R_20250001 RAL-208 1865 chr3R 20256844 20256866 chr3R 20256922 20256944 6 78 0.0 4.0 2.0 2.0 100 chr3R 20256844 intron cic + chr3R 20256894 intron cic + chr3R 20256944 intron cic + chr3R_6_20255001 chr3R_20255001 RAL-208 1866 chr3R 20266517 20266543 chr3R 20272988 20273013 Burdock 13 6470 0.0 8.5 4.2 2.5 6496 chr3R 20266517 intron cic + chr3R 20269765 intron cic + chr3R 20273013 intron cic + chr3R_13_20265001 chr3R_20265001 RAL-208 1867 chr3R 20282275 20282309 chr3R 20282351 20282385 10 76 1.0 3.0 2.0 3.3 110 chr3R 20282275 intron cic + chr3R 20282330 intron cic + chr3R 20282385 intron cic + chr3R_10_20280001 chr3R_20280001 RAL-208 1868 chr3R 20308189 20308201 chr3R 20308277 20308289 9 87 5.5 0.0 2.8 2.4 100 chr3R 20308189 intergenic not near genes chr3R 20308239 intergenic not near genes chr3R 20308289 intergenic not near genes chr3R_9_20305001 chr3R_20305001 RAL-208 1869 chr3R 20330999 20331031 chr3R 20331485 20331517 roo 10 486 1.5 5.0 3.2 2.4 518 chr3R 20330999 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331517 intergenic not near genes chr3R_10_20330001 chr3R_20330001 RAL-208 1870 chr3R 20467076 20467115 chr3R 20467152 20467191 9 76 3.5 2.5 3.0 2.2 115 chr3R 20467076 intron Gfrl - chr3R 20467134 intron Gfrl - chr3R 20467191 intron Gfrl - chr3R_9_20465001 chr3R_20465001 RAL-208 1871 chr3R 20506585 20506610 chr3R 20507388 20507413 BS 6 803 1.5 4.0 2.8 1.6 828 chr3R 20506585 intergenic Or92a + chr3R 20506999 intergenic CG4288 - chr3R 20507413 3` UTR CG4288 - chr3R_6_20505001 chr3R_20505001 RAL-208 1872 chr3R 20657321 20657347 chr3R 20657466 20657492 9 145 2.0 4.5 3.2 2.1 171 chr3R 20657321 intron Nep4 - chr3R 20657406 intron Nep4 - chr3R 20657492 intron Nep4 - chr3R_9_20655001 chr3R_20655001 RAL-208 1873 chr3R 20667454 20667463 chr3R 20667863 20667870 8 409 3.0 2.0 2.5 2.3 416 chr3R 20667454 intergenic not near genes chr3R 20667662 intergenic not near genes chr3R 20667870 intergenic not near genes chr3R_8_20665001 chr3R_20665001 RAL-208 1874 chr3R 20676002 20676035 chr3R 20676086 20676118 15 83 1.5 3.5 2.5 4.3 116 chr3R 20676002 intergenic CG4000 - chr3R 20676060 intergenic CG4000 - chr3R 20676118 intergenic CG4000 - chr3R_15_20675001 chr3R_20675001 RAL-208 1875 chr3R 20703480 20703504 chr3R 20703874 20703898 7 394 5.5 1.0 3.2 1.7 418 chr3R 20703480 intron Oamb - chr3R 20703689 intron Oamb - chr3R 20703898 intron Oamb - chr3R_7_20700001 chr3R_20700001 RAL-208 1876 chr3R 20707745 20707770 chr3R 20707960 20707985 9 215 4.0 1.0 2.5 2.6 240 chr3R 20707745 intron Oamb - chr3R 20707865 intron Oamb - chr3R 20707985 intron Oamb - chr3R_9_20705001 chr3R_20705001 RAL-208 1877 chr3R 20716813 20716843 chr3R 20717150 20717180 12 336 3.0 4.5 3.8 2.5 367 chr3R 20716813 intergenic not near genes chr3R 20716996 intergenic not near genes chr3R 20717180 intergenic not near genes chr3R_12_20715001 chr3R_20715001 RAL-208 1878 chr3R 20730921 20730953 chr3R 20731011 20731044 4 91 1.0 0.0 0.5 2.7 123 chr3R 20730921 intergenic not near genes chr3R 20730982 intergenic not near genes chr3R 20731044 intergenic not near genes chr3R_4_20730001 chr3R_20730001 RAL-208 1879 chr3R 20733765 20733795 chr3R 20733857 20733887 17 91 5.5 10.5 8.0 1.9 122 chr3R 20733765 intergenic not near genes chr3R 20733826 intergenic not near genes chr3R 20733887 intergenic not near genes chr3R_17_20730001 chr3R_20730001 RAL-208 1880 chr3R 20764412 20764442 chr3R 20764508 20764538 12 96 5.0 2.5 3.8 2.5 126 chr3R 20764412 intron Syp + chr3R 20764475 intron Syp + chr3R 20764538 intron Syp + chr3R_12_20760001 chr3R_20760001 RAL-208 1881 chr3R 20771704 20771728 chr3R 20771785 20771809 10 81 0.0 1.5 0.8 5.6 105 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771809 intron,exon Syp +,Takl1 - chr3R_10_20770001 chr3R_20770001 RAL-208 1882 chr3R 20787440 20787455 chr3R 20787531 20787546 10 90 4.0 3.0 3.5 2.2 106 chr3R 20787440 intron Syp + chr3R 20787493 intron Syp + chr3R 20787546 intron Syp + chr3R_10_20785001 chr3R_20785001 RAL-208 1883 chr3R 20854483 20854512 chr3R 20859273 20859302 Doc 13 4790 8.0 0.5 4.2 2.5 4819 chr3R 20854483 intron Ir93a - chr3R 20856892 intron Ir93a - chr3R 20859302 exon Ir93a - chr3R_13_20855001 chr3R_20855001 RAL-208 1884 chr3R 20870257 20870281 chr3R 20870342 20870366 14 85 0.5 2.5 1.5 5.6 109 chr3R 20870257 intergenic not near genes chr3R 20870312 intergenic not near genes chr3R 20870366 intergenic not near genes chr3R_14_20870001 chr3R_20870001 RAL-208 1885 chr3R 20968528 20968556 chr3R 20968631 20968658 11 102 4.5 4.0 4.2 2.1 130 chr3R 20968528 intron Atpalpha + chr3R 20968593 intron Atpalpha + chr3R 20968658 intron Atpalpha + chr3R_11_20965001 chr3R_20965001 RAL-208 1886 chr3R 20990737 20990748 chr3R 20990819 20990829 6 82 5.5 3.0 4.2 1.2 92 chr3R 20990737 intron Calx + chr3R 20990783 intron Calx + chr3R 20990829 intron Calx + chr3R_6_20990001 chr3R_20990001 RAL-208 1887 chr3R 21074807 21074831 chr3R 21075026 21075052 14 221 6.0 5.5 5.8 2.1 245 chr3R 21074807 intron dmrt93B + chr3R 21074930 intron dmrt93B + chr3R 21075052 intron dmrt93B + chr3R_14_21070001 chr3R_21070001 RAL-208 1888 chr3R 21108040 21108063 chr3R 21108301 21108323 7 261 2.5 0.5 1.5 2.8 283 chr3R 21108040 intergenic Sec15 -,rtet + chr3R 21108182 intergenic Sec15 -,rtet + chr3R 21108323 intergenic rtet +,Sec15 - chr3R_7_21105001 chr3R_21105001 RAL-208 1889 chr3R 21141680 21141707 chr3R 21150161 21150185 Tirant 7 8480 3.5 4.5 4.0 1.4 8505 chr3R 21141680 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150185 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-208 1890 chr3R 21165084 21165117 chr3R 21165167 21165200 7 83 1.0 3.5 2.2 2.2 116 chr3R 21165084 intron,3` UTR SNF4Agamma +,CG5810 + chr3R 21165142 intron,3` UTR SNF4Agamma +,CG5810 + chr3R 21165200 intron,3` UTR SNF4Agamma +,Snmp1 - chr3R_7_21165001 chr3R_21165001 RAL-208 1891 chr3R 21214746 21214748 chr3R 21214916 21214920 6 172 2.5 2.0 2.2 1.9 174 chr3R 21214746 intergenic CG5862 + chr3R 21214833 intergenic CG5862 + chr3R 21214920 intergenic CG5862 + chr3R_6_21210001 chr3R_21210001 RAL-208 1892 chr3R 21239807 21239958 chr3R 21239901 21240034 13 81 0.0 0.0 0.0 13.0 227 chr3R 21239807 intergenic not near genes chr3R 21239920 intergenic not near genes chr3R 21240034 intergenic not near genes chr3R_13_21235001 chr3R_21235001 RAL-208 1893 chr3R 21274372 21274403 chr3R 21274466 21274497 8 94 3.0 4.5 3.8 1.7 125 chr3R 21274372 3` UTR CG3301 - chr3R 21274434 3` UTR CG3301 - chr3R 21274497 intron CG3301 - chr3R_8_21270001 chr3R_21270001 RAL-208 1894 chr3R 21383277 21383281 chr3R 21383354 21383361 5 79 0.0 1.5 0.8 2.8 84 chr3R 21383277 intergenic not near genes chr3R 21383319 intergenic not near genes chr3R 21383361 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-208 1895 chr3R 21385933 21385960 chr3R 21386010 21386036 13 77 0.5 6.0 3.2 3.1 103 chr3R 21385933 intergenic not near genes chr3R 21385984 intergenic not near genes chr3R 21386036 intergenic not near genes chr3R_13_21385001 chr3R_21385001 RAL-208 1896 chr3R 21472018 21472024 chr3R 21472099 21472105 5 81 11.5 5.5 8.5 0.5 87 chr3R 21472018 intergenic not near genes chr3R 21472062 intergenic not near genes chr3R 21472105 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-208 1897 chr3R 21506873 21506912 chr3R 21506958 21506992 6 83 0.0 2.0 1.0 3.0 119 chr3R 21506873 intron C15 + chr3R 21506932 intron C15 + chr3R 21506992 intron C15 + chr3R_6_21505001 chr3R_21505001 RAL-208 1898 chr3R 21519985 21520137 chr3R 21520086 21520230 10 97 2.5 2.5 2.5 2.9 245 chr3R 21519985 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520230 intergenic not near genes chr3R_10_21520001 chr3R_21520001 RAL-208 1899 chr3R 21638581 21638596 chr3R 21638670 21638685 5 88 2.0 3.5 2.8 1.3 104 chr3R 21638581 intron E2f - chr3R 21638633 intron E2f - chr3R 21638685 intron E2f - chr3R_5_21635001 chr3R_21635001 RAL-208 1900 chr3R 21754400 21754424 chr3R 21754530 21754554 8 130 2.5 3.0 2.8 2.1 154 chr3R 21754400 5` UTR CG31198 + chr3R 21754477 intron CG31198 + chr3R 21754554 intron CG31198 + chr3R_8_21750001 chr3R_21750001 RAL-208 1901 chr3R 21761119 21761152 chr3R 21768511 21768544 mdg1 9 7391 3.5 4.5 4.0 1.8 7425 chr3R 21761119 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768544 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-208 1902 chr3R 21814834 21814841 chr3R 21814914 21814921 9 79 6.0 1.5 3.8 1.9 87 chr3R 21814834 intron CASK - chr3R 21814878 intron CASK - chr3R 21814921 intron CASK - chr3R_9_21810001 chr3R_21810001 RAL-208 1903 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 18.0 12.5 15.2 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-208 1904 chr3R 21907535 21907535 chr3R 28831801 28831802 11 6924266 18.5 14.5 16.5 0.6 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-208 1905 chr3R 21907536 21907536 chr3R 28831801 28831802 15 6924266 18.5 14.5 16.5 0.9 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-208 1906 chr3R 22084616 22084621 chr3R 22084706 22084711 4 90 0.0 5.5 2.8 1.1 95 chr3R 22084616 intergenic not near genes chr3R 22084664 intergenic not near genes chr3R 22084711 intergenic not near genes chr3R_4_22080001 chr3R_22080001 RAL-208 1907 chr3R 22099671 22099690 chr3R 22099791 22099810 11 119 3.0 3.0 3.0 2.8 139 chr3R 22099671 intron CG5778 - chr3R 22099740 intron CG5778 - chr3R 22099810 intron CG5778 - chr3R_11_22095001 chr3R_22095001 RAL-208 1908 chr3R 22108354 22108377 chr3R 22108585 22108609 6 232 3.0 4.0 3.5 1.3 255 chr3R 22108354 intron CG5778 - chr3R 22108482 intron CG5778 - chr3R 22108609 intron CG5778 - chr3R_6_22105001 chr3R_22105001 RAL-208 1909 chr3R 22126850 22126876 chr3R 22126956 22126982 17 106 6.5 0.0 3.2 4.0 132 chr3R 22126850 intron CG42390 + chr3R 22126916 intron CG42390 + chr3R 22126982 intron CG42390 + chr3R_17_22125001 chr3R_22125001 RAL-208 1910 chr3R 22234696 22234714 chr3R 22236015 22236033 pogo 11 1319 3.0 3.0 3.0 2.8 1337 chr3R 22234696 intron SKIP + chr3R 22235364 intron SKIP + chr3R 22236033 intron SKIP + chr3R_11_22235001 chr3R_22235001 RAL-208 1911 chr3R 22239491 22239501 chr3R 22248551 22248561 roo 5 9060 6.0 0.5 3.2 1.2 9070 chr3R 22239491 intron SKIP + chr3R 22244026 intron SKIP + chr3R 22248561 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-208 1912 chr3R 22257206 22257239 chr3R 22257310 22257343 8 104 5.5 2.0 3.8 1.7 137 chr3R 22257206 intron SKIP + chr3R 22257274 intron SKIP + chr3R 22257343 intron SKIP + chr3R_8_22255001 chr3R_22255001 RAL-208 1913 chr3R 22258435 22258449 chr3R 22258537 22258554 4 104 0.0 1.0 0.5 2.7 119 chr3R 22258435 intron SKIP + chr3R 22258494 intron SKIP + chr3R 22258554 intron SKIP + chr3R_4_22255001 chr3R_22255001 RAL-208 1914 chr3R 22272349 22272371 chr3R 22272430 22272453 7 82 2.0 3.0 2.5 2.0 104 chr3R 22272349 intron SKIP + chr3R 22272401 intron SKIP + chr3R 22272453 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-208 1915 chr3R 22428584 22428609 chr3R 22428660 22428682 9 75 2.5 5.5 4.0 1.8 98 chr3R 22428584 intron CG13847 - chr3R 22428633 intron CG13847 - chr3R 22428682 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-208 1916 chr3R 22433092 22433110 chr3R 22433191 22433209 8 100 3.5 5.0 4.2 1.5 117 chr3R 22433092 intron CG13847 - chr3R 22433150 intron CG13847 - chr3R 22433209 intron CG13847 - chr3R_8_22430001 chr3R_22430001 RAL-208 1917 chr3R 22450542 22450578 chr3R 22453182 22453218 NOF 20 2640 3.0 3.0 3.0 5.0 2676 chr3R 22450542 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_20_22450001 chr3R_22450001 RAL-208 1918 chr3R 22566322 22566350 chr3R 22566430 22566458 4 108 2.0 3.5 2.8 1.1 136 chr3R 22566322 intergenic not near genes chr3R 22566390 intergenic not near genes chr3R 22566458 intergenic not near genes chr3R_4_22565001 chr3R_22565001 RAL-208 1919 chr3R 22580644 22580671 chr3R 22580727 22580754 15 82 2.5 2.5 2.5 4.3 110 chr3R 22580644 intergenic CSN6 +,CG33110 + chr3R 22580699 intergenic CSN6 +,CG33110 + chr3R 22580754 intergenic CSN6 +,CG33110 + chr3R_15_22580001 chr3R_22580001 RAL-208 1920 chr3R 22657711 22657745 chr3R 22657796 22657830 6 85 0.0 0.0 0.0 6.0 119 chr3R 22657711 intron wake + chr3R 22657770 intron wake + chr3R 22657830 intron wake + chr3R_6_22655001 chr3R_22655001 RAL-208 1921 chr3R 22797760 22797938 chr3R 22797846 22798034 24 91 0.0 0.0 0.0 24.0 274 chr3R 22797760 intergenic not near genes chr3R 22797897 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_24_22795001 chr3R_22795001 RAL-208 1922 chr3R 22827412 22827446 chr3R 22827488 22827522 10 76 4.0 4.5 4.2 1.9 110 chr3R 22827412 intergenic CR44350 - chr3R 22827467 intergenic CR44350 - chr3R 22827522 intergenic CR44350 - chr3R_10_22825001 chr3R_22825001 RAL-208 1923 chr3R 22842397 22842413 chr3R 22842496 22842512 9 99 4.5 4.5 4.5 1.6 115 chr3R 22842397 intergenic not near genes chr3R 22842454 intergenic not near genes chr3R 22842512 intergenic not near genes chr3R_9_22840001 chr3R_22840001 RAL-208 1924 chr3R 22880607 22880614 chr3R 22880684 22880689 4 76 5.0 10.0 7.5 0.5 82 chr3R 22880607 intergenic not near genes chr3R 22880648 intergenic not near genes chr3R 22880689 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-208 1925 chr3R 22880933 22880960 chr3R 22881071 22881097 14 138 1.5 3.0 2.2 4.4 164 chr3R 22880933 intergenic not near genes chr3R 22881015 intergenic not near genes chr3R 22881097 intergenic not near genes chr3R_14_22880001 chr3R_22880001 RAL-208 1926 chr3R 22881191 22881218 chr3R 22884897 22884924 Doc 8 3706 2.5 4.0 3.2 1.9 3733 chr3R 22881191 intergenic not near genes chr3R 22883058 intergenic not near genes chr3R 22884924 intergenic not near genes chr3R_8_22880001 chr3R_22880001 RAL-208 1927 chr3R 22919162 22919189 chr3R 22919256 22919286 6 96 3.5 6.5 5.0 1.0 124 chr3R 22919162 intron klg + chr3R 22919224 intron klg + chr3R 22919286 intron klg + chr3R_6_22915001 chr3R_22915001 RAL-208 1928 chr3R 22972698 22972728 chr3R 22972774 22972803 13 76 2.5 4.0 3.2 3.1 105 chr3R 22972698 intergenic not near genes chr3R 22972750 intergenic not near genes chr3R 22972803 intergenic not near genes chr3R_13_22970001 chr3R_22970001 RAL-208 1929 chr3R 22990349 22990386 chr3R 22990604 22990641 11 255 0.5 3.0 1.8 3.9 292 chr3R 22990349 intron,exon Nha2 -,Or94b + chr3R 22990495 intron,intron Nha2 -,Or94b + chr3R 22990641 intron Nha2 - chr3R_11_22990001 chr3R_22990001 RAL-208 1930 chr3R 23073652 23073669 chr3R 23073741 23073758 7 89 5.5 1.5 3.5 1.6 106 chr3R 23073652 intron CG13830 - chr3R 23073705 intron CG13830 - chr3R 23073758 intron CG13830 - chr3R_7_23070001 chr3R_23070001 RAL-208 1931 chr3R 23242294 23242321 chr3R 23242374 23242401 10 80 2.5 0.0 1.2 4.5 107 chr3R 23242294 intron CG4467 - chr3R 23242348 intron CG4467 - chr3R 23242401 intron CG4467 - chr3R_10_23240001 chr3R_23240001 RAL-208 1932 chr3R 23291254 23291283 chr3R 23291340 23291369 8 86 6.5 5.0 5.8 1.2 115 chr3R 23291254 3` UTR pnt - chr3R 23291312 3` UTR pnt - chr3R 23291369 exon pnt - chr3R_8_23290001 chr3R_23290001 RAL-208 1933 chr3R 23558406 23558426 chr3R 23560187 23560207 Bari1 8 1781 2.5 3.0 2.8 2.1 1801 chr3R 23558406 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560207 intron beat-IV + chr3R_8_23555001 chr3R_23555001 RAL-208 1934 chr3R 23639926 23639959 chr3R 23640232 23640265 10 306 1.5 2.0 1.8 3.6 339 chr3R 23639926 intron CG31145 - chr3R 23640096 intron CG31145 - chr3R 23640265 intron CG31145 - chr3R_10_23640001 chr3R_23640001 RAL-208 1935 chr3R 23684697 23684726 chr3R 23685182 23685212 roo 8 485 0.5 4.5 2.5 2.3 515 chr3R 23684697 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685212 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-208 1936 chr3R 23714081 23714091 chr3R 23714168 23714178 4 87 6.0 0.5 3.2 1.0 97 chr3R 23714081 intron nau - chr3R 23714130 intron nau - chr3R 23714178 intron nau - chr3R_4_23710001 chr3R_23710001 RAL-208 1937 chr3R 23733821 23733844 chr3R 23734034 23734057 11 213 3.0 2.0 2.5 3.1 236 chr3R 23733821 5` UTR Hmgcr + chr3R 23733939 intron Hmgcr + chr3R 23734057 intron Hmgcr + chr3R_11_23730001 chr3R_23730001 RAL-208 1938 chr3R 23801577 23801601 chr3R 23801665 23801689 8 87 3.0 0.0 1.5 3.2 112 chr3R 23801577 3` UTR mbc + chr3R 23801633 3` UTR mbc + chr3R 23801689 intergenic CG33111 -,mbc + chr3R_8_23800001 chr3R_23800001 RAL-208 1939 chr3R 23820638 23820669 chr3R 23820722 23820753 10 84 0.5 3.0 1.8 3.6 115 chr3R 23820638 5` UTR CG34355 + chr3R 23820696 5` UTR CG34355 + chr3R 23820753 5` UTR CG34355 + chr3R_10_23820001 chr3R_23820001 RAL-208 1940 chr3R 23835409 23835435 chr3R 23844559 23844585 roo 5 9150 3.0 5.5 4.2 1.0 9176 chr3R 23835409 intron CG34355 + chr3R 23839997 intron CG34355 + chr3R 23844585 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-208 1941 chr3R 23888081 23888116 chr3R 23888167 23888202 9 86 3.5 3.5 3.5 2.0 121 chr3R 23888081 intron Pli - chr3R 23888142 intron Pli - chr3R 23888202 intron Pli - chr3R_9_23885001 chr3R_23885001 RAL-208 1942 chr3R 23944912 23944934 chr3R 23944997 23945019 7 85 3.0 2.5 2.8 1.8 107 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-208 1943 chr3R 23949045 23949068 chr3R 23949122 23949145 8 77 1.5 1.0 1.2 3.6 100 chr3R 23949045 intergenic not near genes chr3R 23949095 intergenic not near genes chr3R 23949145 intergenic not near genes chr3R_8_23945001 chr3R_23945001 RAL-208 1944 chr3R 24011668 24011679 chr3R 24011751 24011762 10 83 2.5 3.5 3.0 2.5 94 chr3R 24011668 intron KrT95D - chr3R 24011715 intron KrT95D - chr3R 24011762 intron KrT95D - chr3R_10_24010001 chr3R_24010001 RAL-208 1945 chr3R 24021625 24021660 chr3R 24021715 24021750 11 90 1.5 2.0 1.8 3.9 125 chr3R 24021625 intron KrT95D - chr3R 24021688 intron KrT95D - chr3R 24021750 intron KrT95D - chr3R_11_24020001 chr3R_24020001 RAL-208 1946 chr3R 24072091 24072121 chr3R 24072522 24072559 jockey 15 436 2.5 5.5 4.0 3.0 468 chr3R 24072091 intron 4EHP - chr3R 24072325 intron 4EHP - chr3R 24072559 intron 4EHP - chr3R_15_24070001 chr3R_24070001 RAL-208 1947 chr3R 24076917 24076942 chr3R 24078384 24078408 hobo 10 1467 3.5 2.0 2.8 2.6 1491 chr3R 24076917 intron 4EHP - chr3R 24077662 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-208 1948 chr3R 24207216 24207247 chr3R 24212291 24212323 flea 10 5076 4.5 2.5 3.5 2.2 5107 chr3R 24207216 intron twin - chr3R 24209770 intron twin - chr3R 24212323 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-208 1949 chr3R 24434566 24434592 chr3R 24434681 24434704 6 114 1.5 2.5 2.0 2.0 138 chr3R 24434566 intron nAChRalpha1 - chr3R 24434635 intron nAChRalpha1 - chr3R 24434704 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-208 1950 chr3R 24493061 24493087 chr3R 24493147 24493173 12 86 2.5 3.0 2.8 3.2 112 chr3R 24493061 intergenic not near genes chr3R 24493117 intergenic not near genes chr3R 24493173 intergenic not near genes chr3R_12_24490001 chr3R_24490001 RAL-208 1951 chr3R 24493283 24493310 chr3R 24493511 24493539 BS 16 229 2.5 6.0 4.2 3.1 256 chr3R 24493283 intergenic not near genes chr3R 24493411 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_16_24490001 chr3R_24490001 RAL-208 1952 chr3R 24496482 24496510 chr3R 24496562 24496587 8 81 2.0 3.5 2.8 2.1 105 chr3R 24496482 intergenic not near genes chr3R 24496534 intergenic not near genes chr3R 24496587 intergenic not near genes chr3R_8_24495001 chr3R_24495001 RAL-208 1953 chr3R 24527806 24527830 chr3R 24527897 24527921 4 91 1.5 6.0 3.8 0.8 115 chr3R 24527806 intergenic CG6607 +,CG13618 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527921 intergenic CG6607 +,CG13618 + chr3R_4_24525001 chr3R_24525001 RAL-208 1954 chr3R 24607671 24607681 chr3R 24607749 24607759 6 78 2.5 6.0 4.2 1.2 88 chr3R 24607671 intron mld + chr3R 24607715 intron mld + chr3R 24607759 intron mld + chr3R_6_24605001 chr3R_24605001 RAL-208 1955 chr3R 24729170 24729200 chr3R 24729247 24729277 8 76 5.0 2.5 3.8 1.7 107 chr3R 24729170 intron tok + chr3R 24729224 intron tok + chr3R 24729277 intron tok + chr3R_8_24725001 chr3R_24725001 RAL-208 1956 chr3R 24730098 24730115 chr3R 24732474 24732493 Doc 6 2377 2.0 0.5 1.2 2.7 2395 chr3R 24730098 intron tok + chr3R 24731296 intron tok + chr3R 24732493 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-208 1957 chr3R 24854907 24854912 chr3R 24854989 24854994 4 82 1.5 3.0 2.2 1.2 87 chr3R 24854907 3` UTR HdacX - chr3R 24854950 3` UTR HdacX - chr3R 24854994 3` UTR HdacX - chr3R_4_24850001 chr3R_24850001 RAL-208 1958 chr3R 24893473 24893491 chr3R 24893553 24893571 8 80 3.5 0.0 1.8 2.9 98 chr3R 24893473 intron CG31121 - chr3R 24893522 intron CG31121 - chr3R 24893571 intron CG31121 - chr3R_8_24890001 chr3R_24890001 RAL-208 1959 chr3R 24927126 24927155 chr3R 24931916 24931945 Doc 10 4790 9.0 0.5 4.8 1.7 4819 chr3R 24927126 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_10_24925001 chr3R_24925001 RAL-208 1960 chr3R 24961261 24961292 chr3R 24961375 24961409 8 116 2.0 7.0 4.5 1.5 148 chr3R 24961261 intergenic not near genes chr3R 24961335 intergenic not near genes chr3R 24961409 intergenic not near genes chr3R_8_24960001 chr3R_24960001 RAL-208 1961 chr3R 24969625 24969659 chr3R 24969711 24969745 5 86 1.5 0.0 0.8 2.8 120 chr3R 24969625 intergenic not near genes chr3R 24969685 intergenic not near genes chr3R 24969745 intergenic not near genes chr3R_5_24965001 chr3R_24965001 RAL-208 1962 chr3R 24974913 24974933 chr3R 24974991 24975012 10 79 4.5 4.5 4.5 1.8 99 chr3R 24974913 intergenic not near genes chr3R 24974962 intergenic not near genes chr3R 24975012 intergenic not near genes chr3R_10_24970001 chr3R_24970001 RAL-208 1963 chr3R 25004902 25004921 chr3R 25004985 25005004 7 83 0.0 4.5 2.2 2.2 102 chr3R 25004902 intron tnc + chr3R 25004953 intron tnc + chr3R 25005004 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-208 1964 chr3R 25235820 25235840 chr3R 25235900 25235920 9 80 1.5 1.0 1.2 4.1 100 chr3R 25235820 intergenic CG10420 - chr3R 25235870 intergenic CG10420 - chr3R 25235920 intergenic CG10420 - chr3R_9_25235001 chr3R_25235001 RAL-208 1965 chr3R 25296169 25296193 chr3R 25296250 25296274 10 81 2.5 3.0 2.8 2.6 105 chr3R 25296169 3` UTR CG31097 - chr3R 25296222 3` UTR CG31097 - chr3R 25296274 3` UTR CG31097 - chr3R_10_25295001 chr3R_25295001 RAL-208 1966 chr3R 25368475 25368503 chr3R 25368593 25368621 6 118 1.5 0.0 0.8 3.3 146 chr3R 25368475 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368621 intron Fur1 - chr3R_6_25365001 chr3R_25365001 RAL-208 1967 chr3R 25422064 25422098 chr3R 25422145 25422179 6 81 1.5 0.0 0.8 3.3 115 chr3R 25422064 intron Fur1 - chr3R 25422122 intron Fur1 - chr3R 25422179 intron Fur1 - chr3R_6_25420001 chr3R_25420001 RAL-208 1968 chr3R 25464491 25464523 chr3R 25464808 25464837 11 317 4.0 3.0 3.5 2.4 346 chr3R 25464491 intron Fur1 - chr3R 25464664 intron Fur1 - chr3R 25464837 intron Fur1 - chr3R_11_25460001 chr3R_25460001 RAL-208 1969 chr3R 25514441 25514447 chr3R 25514522 25514528 4 81 1.0 2.0 1.5 1.6 87 chr3R 25514441 intergenic not near genes chr3R 25514484 intergenic not near genes chr3R 25514528 intergenic not near genes chr3R_4_25510001 chr3R_25510001 RAL-208 1970 chr3R 25573655 25573682 chr3R 25573747 25573774 9 92 6.0 1.5 3.8 1.9 119 chr3R 25573655 intron msi + chr3R 25573714 intron msi + chr3R 25573774 intron msi + chr3R_9_25570001 chr3R_25570001 RAL-208 1971 chr3R 25652321 25652347 chr3R 25652398 25652424 10 77 0.5 3.0 1.8 3.6 103 chr3R 25652321 intergenic not near genes chr3R 25652372 intergenic not near genes chr3R 25652424 intergenic not near genes chr3R_10_25650001 chr3R_25650001 RAL-208 1972 chr3R 25738629 25738658 chr3R 25738717 25738746 9 88 5.5 3.0 4.2 1.7 117 chr3R 25738629 intron LpR2 - chr3R 25738688 intron LpR2 - chr3R 25738746 intron LpR2 - chr3R_9_25735001 chr3R_25735001 RAL-208 1973 chr3R 25755756 25755756 chr3R 25755843 25755844 5 88 5.5 10.0 7.8 0.6 88 chr3R 25755756 intron LpR1 - chr3R 25755800 intron LpR1 - chr3R 25755844 intron LpR1 - chr3R_5_25755001 chr3R_25755001 RAL-208 1974 chr3R 25755757 25755775 chr3R 25755841 25755863 5 87 4.5 10.0 7.2 0.6 106 chr3R 25755757 intron LpR1 - chr3R 25755810 intron LpR1 - chr3R 25755863 intron LpR1 - chr3R_5_25755001 chr3R_25755001 RAL-208 1975 chr3R 25796381 25796398 chr3R 25796460 25796477 4 79 5.0 0.0 2.5 1.1 96 chr3R 25796381 intergenic CR43847 - chr3R 25796429 intergenic CR43847 - chr3R 25796477 intergenic CR43847 - chr3R_4_25795001 chr3R_25795001 RAL-208 1976 chr3R 25801267 25801292 chr3R 25802251 25802276 4 984 2.5 3.5 3.0 1.0 1009 chr3R 25801267 intergenic not near genes chr3R 25801772 intergenic not near genes chr3R 25802276 intergenic not near genes chr3R_4_25800001 chr3R_25800001 RAL-208 1977 chr3R 25832690 25832722 chr3R 25841872 25841904 roo 12 9182 3.5 4.5 4.0 2.4 9214 chr3R 25832690 exon alpha4GT2 + chr3R 25837297 intron alpha4GT2 + chr3R 25841904 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-208 1978 chr3R 25932748 25932756 chr3R 25933139 25933148 6 392 7.0 1.0 4.0 1.2 400 chr3R 25932748 intron CCAP-R - chr3R 25932948 intron CCAP-R - chr3R 25933148 intron CCAP-R - chr3R_6_25930001 chr3R_25930001 RAL-208 1979 chr3R 26013852 26013861 chr3R 26013932 26013939 4 80 6.0 2.5 4.2 0.8 87 chr3R 26013852 intergenic not near genes chr3R 26013896 intergenic not near genes chr3R 26013939 intergenic not near genes chr3R_4_26010001 chr3R_26010001 RAL-208 1980 chr3R 26108832 26108841 chr3R 26117413 26117424 Tirant 4 8582 6.5 0.5 3.5 0.9 8592 chr3R 26108832 5` UTR CG31324 + chr3R 26113128 intron CG31324 + chr3R 26117424 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-208 1981 chr3R 26138883 26138911 chr3R 26139430 26139458 9 547 2.0 3.5 2.8 2.4 575 chr3R 26138883 intergenic not near genes chr3R 26139170 intergenic not near genes chr3R 26139458 intergenic not near genes chr3R_9_26135001 chr3R_26135001 RAL-208 1982 chr3R 26175213 26175248 chr3R 26175320 26175355 18 107 3.5 5.5 4.5 3.3 142 chr3R 26175213 intron CG31323 + chr3R 26175284 intron CG31323 + chr3R 26175355 intron CG31323 + chr3R_18_26175001 chr3R_26175001 RAL-208 1983 chr3R 26240460 26240487 chr3R 26240606 26240633 11 145 0.0 4.0 2.0 3.7 173 chr3R 26240460 intron CR42745 + chr3R 26240546 intron CR42745 + chr3R 26240633 intron CR42745 + chr3R_11_26240001 chr3R_26240001 RAL-208 1984 chr3R 26292106 26292139 chr3R 26292186 26292217 6 80 2.5 2.0 2.2 1.9 111 chr3R 26292106 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292217 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-208 1985 chr3R 26294725 26294746 chr3R 26294800 26294824 14 77 3.0 1.5 2.2 4.4 99 chr3R 26294725 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294824 intergenic not near genes chr3R_14_26290001 chr3R_26290001 RAL-208 1986 chr3R 26297702 26297729 chr3R 26297790 26297817 8 88 3.0 2.0 2.5 2.3 115 chr3R 26297702 intergenic not near genes chr3R 26297760 intergenic not near genes chr3R 26297817 intergenic not near genes chr3R_8_26295001 chr3R_26295001 RAL-208 1987 chr3R 26359018 26359042 chr3R 26359317 26359341 10 299 2.0 7.0 4.5 1.8 323 chr3R 26359018 intron CG33970 + chr3R 26359180 intron CG33970 + chr3R 26359341 intron CG33970 + chr3R_10_26355001 chr3R_26355001 RAL-208 1988 chr3R 26376322 26376357 chr3R 26385482 26385517 roo 12 9160 4.5 1.5 3.0 3.0 9195 chr3R 26376322 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_12_26380001 chr3R_26380001 RAL-208 1989 chr3R 26510503 26510533 chr3R 26519563 26519594 roo 14 9061 3.0 4.0 3.5 3.1 9091 chr3R 26510503 intron plum - chr3R 26515048 intron plum - chr3R 26519594 intron,5` UTR plum -,CR45226 + chr3R_14_26515001 chr3R_26515001 RAL-208 1990 chr3R 26541000 26541032 chr3R 26541079 26541111 9 79 1.0 0.0 0.5 6.0 111 chr3R 26541000 intron scrib + chr3R 26541056 intron scrib + chr3R 26541111 intron scrib + chr3R_9_26540001 chr3R_26540001 RAL-208 1991 chr3R 26558327 26558361 chr3R 26565638 26565673 Stalker4 11 7311 2.0 1.0 1.5 4.4 7346 chr3R 26558327 intron scrib + chr3R 26562000 intron scrib + chr3R 26565673 intron scrib + chr3R_11_26560001 chr3R_26560001 RAL-208 1992 chr3R 26568061 26568071 chr3R 26568142 26568153 10 82 0.0 8.0 4.0 2.0 92 chr3R 26568061 intron scrib + chr3R 26568107 intron scrib + chr3R 26568153 intron scrib + chr3R_10_26565001 chr3R_26565001 RAL-208 1993 chr3R 26642732 26642760 chr3R 26643124 26643153 jockey 11 393 4.5 7.0 5.8 1.6 421 chr3R 26642732 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_11_26640001 chr3R_26640001 RAL-208 1994 chr3R 26656697 26656697 chr3R 26656779 26656780 4 82 8.5 5.5 7.0 0.5 83 chr3R 26656697 intron,exon beat-VII -,Tb + chr3R 26656738 intron,exon beat-VII -,Tb + chr3R 26656780 intron,exon beat-VII -,Tb + chr3R_4_26655001 chr3R_26655001 RAL-208 1995 chr3R 26688871 26688878 chr3R 26688949 26688956 5 78 2.5 6.0 4.2 1.0 85 chr3R 26688871 intergenic not near genes chr3R 26688914 intergenic not near genes chr3R 26688956 intergenic not near genes chr3R_5_26685001 chr3R_26685001 RAL-208 1996 chr3R 26710830 26710856 chr3R 26710914 26710940 12 84 4.5 6.5 5.5 1.8 110 chr3R 26710830 intron amon - chr3R 26710885 intron amon - chr3R 26710940 intron amon - chr3R_12_26710001 chr3R_26710001 RAL-208 1997 chr3R 26734732 26734757 chr3R 26734810 26734830 12 77 2.5 4.5 3.5 2.7 98 chr3R 26734732 intergenic not near genes chr3R 26734781 intergenic not near genes chr3R 26734830 intergenic not near genes chr3R_12_26730001 chr3R_26730001 RAL-208 1998 chr3R 26770241 26770272 chr3R 26770318 26770349 17 77 1.5 2.0 1.8 6.1 108 chr3R 26770241 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_17_26770001 chr3R_26770001 RAL-208 1999 chr3R 26810552 26810586 chr3R 26811037 26811071 roo 6 485 5.5 6.5 6.0 0.9 519 chr3R 26810552 intron Tl + chr3R 26810812 intron Tl + chr3R 26811071 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-208 2000 chr3R 26963831 26963849 chr3R 26963982 26963999 12 151 5.5 1.0 3.2 2.9 168 chr3R 26963831 intron Tsp97E - chr3R 26963915 intron Tsp97E - chr3R 26963999 intron Tsp97E - chr3R_12_26960001 chr3R_26960001 RAL-208 2001 chr3R 27007405 27007434 chr3R 27016540 27016568 roo 8 9135 2.5 2.5 2.5 2.3 9163 chr3R 27007405 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016568 intron RYa-R + chr3R_8_27010001 chr3R_27010001 RAL-208 2002 chr3R 27019512 27019534 chr3R 27019605 27019630 7 95 3.0 2.0 2.5 2.0 118 chr3R 27019512 intron,exon RYa-R +,CG17191 - chr3R 27019571 intron,exon RYa-R +,CG17191 - chr3R 27019630 intron,exon RYa-R +,CG17191 - chr3R_7_27015001 chr3R_27015001 RAL-208 2003 chr3R 27027689 27027720 chr3R 27027770 27027796 10 81 0.0 2.0 1.0 5.0 107 chr3R 27027689 intron RYa-R + chr3R 27027742 intron RYa-R + chr3R 27027796 intron RYa-R + chr3R_10_27025001 chr3R_27025001 RAL-208 2004 chr3R 27031094 27031119 chr3R 27031176 27031202 9 83 6.0 5.0 5.5 1.4 108 chr3R 27031094 intron RYa-R + chr3R 27031148 intron RYa-R + chr3R 27031202 intron RYa-R + chr3R_9_27030001 chr3R_27030001 RAL-208 2005 chr3R 27038445 27038471 chr3R 27039509 27039535 10 1064 3.5 0.0 1.8 3.6 1090 chr3R 27038445 intron RYa-R + chr3R 27038990 intron RYa-R + chr3R 27039535 intron RYa-R + chr3R_10_27035001 chr3R_27035001 RAL-208 2006 chr3R 27051837 27051866 chr3R 27051954 27051983 9 117 0.0 3.0 1.5 3.6 146 chr3R 27051837 intron RYa-R + chr3R 27051910 intron RYa-R + chr3R 27051983 intron RYa-R + chr3R_9_27050001 chr3R_27050001 RAL-208 2007 chr3R 27077097 27077130 chr3R 27077177 27077209 20 80 3.5 1.5 2.5 5.7 112 chr3R 27077097 intron CG14257 + chr3R 27077153 intron CG14257 + chr3R 27077209 intron CG14257 + chr3R_20_27075001 chr3R_27075001 RAL-208 2008 chr3R 27091563 27091567 chr3R 27091642 27091646 5 79 9.5 0.0 4.8 0.9 83 chr3R 27091563 intergenic Cpr97Eb - chr3R 27091604 intergenic Cpr97Eb - chr3R 27091646 intergenic not near genes chr3R_5_27090001 chr3R_27090001 RAL-208 2009 chr3R 27140513 27140533 chr3R 27148123 27148141 412 4 7610 3.5 3.0 3.2 1.0 7628 chr3R 27140513 intron CG6051 - chr3R 27144327 intron CG6051 - chr3R 27148141 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-208 2010 chr3R 27342794 27342819 chr3R 27351372 27351400 Tirant 11 8580 0.0 2.5 1.2 5.0 8606 chr3R 27342794 intron CG42534 + chr3R 27347097 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-208 2011 chr3R 27470044 27470074 chr3R 27470706 27470735 11 661 4.0 1.0 2.5 3.1 691 chr3R 27470044 intergenic not near genes chr3R 27470390 intergenic not near genes chr3R 27470735 intergenic not near genes chr3R_11_27470001 chr3R_27470001 RAL-208 2012 chr3R 27492391 27492403 chr3R 27492478 27492490 5 87 1.0 2.5 1.8 1.8 99 chr3R 27492391 intergenic not near genes chr3R 27492440 intergenic not near genes chr3R 27492490 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-208 2013 chr3R 27496597 27496604 chr3R 27496702 27496709 4 105 6.0 3.0 4.5 0.7 112 chr3R 27496597 intergenic not near genes chr3R 27496653 intergenic not near genes chr3R 27496709 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-208 2014 chr3R 27619700 27619727 chr3R 27619814 27619841 7 114 3.0 2.0 2.5 2.0 141 chr3R 27619700 intron Tusp + chr3R 27619770 intron Tusp + chr3R 27619841 intron Tusp + chr3R_7_27615001 chr3R_27615001 RAL-208 2015 chr3R 27644263 27644279 chr3R 27644355 27644368 8 92 4.5 4.5 4.5 1.5 105 chr3R 27644263 intron tau - chr3R 27644316 intron tau - chr3R 27644368 intron tau - chr3R_8_27640001 chr3R_27640001 RAL-208 2016 chr3R 27679945 27679969 chr3R 27680068 27680092 12 123 2.5 5.0 3.8 2.5 147 chr3R 27679945 exon CG12883 + chr3R 27680018 3` UTR CG12883 + chr3R 27680092 3` UTR CG12883 + chr3R_12_27680001 chr3R_27680001 RAL-208 2017 chr3R 27705369 27705389 chr3R 27705449 27705469 6 79 1.5 2.0 1.8 2.1 100 chr3R 27705369 exon CG12428 - chr3R 27705419 intron CG12428 - chr3R 27705469 exon CG12428 - chr3R_6_27705001 chr3R_27705001 RAL-208 2018 chr3R 27725562 27725602 chr3R 27731004 27731045 I-element 7 5442 4.5 0.0 2.2 2.2 5483 chr3R 27725562 intergenic not near genes chr3R 27728304 intergenic not near genes chr3R 27731045 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-208 2019 chr3R 27791640 27791643 chr3R 27794792 27794793 Rt1c 4 3150 7.5 9.0 8.2 0.4 3153 chr3R 27791640 intron CG34353 - chr3R 27793216 intron CG34353 - chr3R 27794793 intron CG34353 - chr3R_4_27790001 chr3R_27790001 RAL-208 2020 chr3R 27799938 27799964 chr3R 27800020 27800046 11 82 1.0 4.5 2.8 2.9 108 chr3R 27799938 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_11_27795001 chr3R_27795001 RAL-208 2021 chr3R 27800696 27800719 chr3R 27800791 27800814 12 95 2.0 4.0 3.0 3.0 118 chr3R 27800696 intron CG34353 - chr3R 27800755 intron CG34353 - chr3R 27800814 intron CG34353 - chr3R_12_27800001 chr3R_27800001 RAL-208 2022 chr3R 27823665 27823694 chr3R 27823750 27823779 12 85 2.0 2.5 2.2 3.8 114 chr3R 27823665 intron CG34353 - chr3R 27823722 intron CG34353 - chr3R 27823779 intron CG34353 - chr3R_12_27820001 chr3R_27820001 RAL-208 2023 chr3R 27856758 27856789 chr3R 27858241 27858270 hopper2 12 1483 7.0 4.0 5.5 1.8 1512 chr3R 27856758 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_12_27855001 chr3R_27855001 RAL-208 2024 chr3R 27862960 27862987 chr3R 27868265 27868292 Transpac 17 5305 1.0 3.5 2.2 5.3 5332 chr3R 27862960 intron CG34353 - chr3R 27865626 intron CG34353 - chr3R 27868292 intron CG34353 - chr3R_17_27865001 chr3R_27865001 RAL-208 2025 chr3R 27875703 27875732 chr3R 27882755 27882787 297 9 7054 1.0 5.0 3.0 2.2 7084 chr3R 27875703 intron CG34353 - chr3R 27879245 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-208 2026 chr3R 27891525 27891547 chr3R 27891708 27891729 5 184 1.0 0.0 0.5 3.3 204 chr3R 27891525 intron CG34353 - chr3R 27891627 intron CG34353 - chr3R 27891729 intron CG34353 - chr3R_5_27890001 chr3R_27890001 RAL-208 2027 chr3R 28002909 28002926 chr3R 28002986 28003003 8 77 2.0 2.0 2.0 2.7 94 chr3R 28002909 intergenic not near genes chr3R 28002956 intergenic not near genes chr3R 28003003 intergenic not near genes chr3R_8_28000001 chr3R_28000001 RAL-208 2028 chr3R 28017946 28017984 chr3R 28018037 28018074 10 91 1.5 1.5 1.5 4.0 128 chr3R 28017946 intergenic not near genes chr3R 28018010 intergenic not near genes chr3R 28018074 intergenic not near genes chr3R_10_28015001 chr3R_28015001 RAL-208 2029 chr3R 28068500 28068530 chr3R 28073941 28073972 I-element 11 5442 3.0 3.5 3.2 2.6 5472 chr3R 28068500 intron CG34362 + chr3R 28071236 intron CG34362 + chr3R 28073972 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-208 2030 chr3R 28132492 28132512 chr3R 28132574 28132594 6 81 3.0 2.5 2.8 1.6 102 chr3R 28132492 intergenic not near genes chr3R 28132543 intergenic not near genes chr3R 28132594 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-208 2031 chr3R 28137691 28137718 chr3R 28137771 28137796 5 79 1.5 5.0 3.2 1.2 105 chr3R 28137691 intergenic not near genes chr3R 28137744 intergenic not near genes chr3R 28137796 intergenic not near genes chr3R_5_28135001 chr3R_28135001 RAL-208 2032 chr3R 28152345 28152362 chr3R 28152420 28152439 5 77 4.5 3.0 3.8 1.0 94 chr3R 28152345 intron CG34354 + chr3R 28152392 intron CG34354 + chr3R 28152439 intron CG34354 + chr3R_5_28150001 chr3R_28150001 RAL-208 2033 chr3R 28173678 28173701 chr3R 28181107 28181130 mdg1 8 7430 3.5 3.0 3.2 1.9 7452 chr3R 28173678 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181130 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-208 2034 chr3R 28253348 28253372 chr3R 28255857 28255882 jockey 8 2510 1.0 5.0 3.0 2.0 2534 chr3R 28253348 intergenic not near genes chr3R 28254615 intergenic not near genes chr3R 28255882 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-208 2035 chr3R 28286335 28286346 chr3R 28286420 28286434 5 86 0.5 2.5 1.5 2.0 99 chr3R 28286335 intergenic not near genes chr3R 28286384 intergenic not near genes chr3R 28286434 intergenic not near genes chr3R_5_28285001 chr3R_28285001 RAL-208 2036 chr3R 28302102 28302138 chr3R 28302541 28302577 jockey 13 439 2.0 2.0 2.0 4.3 475 chr3R 28302102 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302577 intergenic not near genes chr3R_13_28300001 chr3R_28300001 RAL-208 2037 chr3R 28308071 28308079 chr3R 28308148 28308156 5 77 4.0 6.0 5.0 0.8 85 chr3R 28308071 intergenic not near genes chr3R 28308114 intergenic not near genes chr3R 28308156 intergenic not near genes chr3R_5_28305001 chr3R_28305001 RAL-208 2038 chr3R 28331510 28331519 chr3R 28331589 28331598 5 79 1.0 3.0 2.0 1.7 88 chr3R 28331510 intron larp - chr3R 28331554 intron larp - chr3R 28331598 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-208 2039 chr3R 28352520 28352544 chr3R 28352860 28352884 6 340 3.0 4.0 3.5 1.3 364 chr3R 28352520 exon Or98b + chr3R 28352702 exon Or98b + chr3R 28352884 exon Or98b + chr3R_6_28350001 chr3R_28350001 RAL-208 2040 chr3R 28358861 28358891 chr3R 28359201 28359230 20 339 0.5 2.5 1.5 8.0 369 chr3R 28358861 intergenic not near genes chr3R 28359046 intergenic not near genes chr3R 28359230 intergenic not near genes chr3R_20_28355001 chr3R_28355001 RAL-208 2041 chr3R 28390121 28390146 chr3R 28390199 28390224 17 77 0.0 7.0 3.5 3.8 103 chr3R 28390121 intergenic not near genes chr3R 28390172 intergenic not near genes chr3R 28390224 intergenic not near genes chr3R_17_28390001 chr3R_28390001 RAL-208 2042 chr3R 28393705 28393722 chr3R 28393805 28393822 11 100 6.5 4.0 5.2 1.8 117 chr3R 28393705 intergenic not near genes chr3R 28393764 intergenic not near genes chr3R 28393822 intergenic not near genes chr3R_11_28390001 chr3R_28390001 RAL-208 2043 chr3R 28465300 28465331 chr3R 28465417 28465448 9 116 3.5 1.5 2.5 2.6 148 chr3R 28465300 intron beat-VI + chr3R 28465374 intron beat-VI + chr3R 28465448 intron beat-VI + chr3R_9_28465001 chr3R_28465001 RAL-208 2044 chr3R 28479146 28479168 chr3R 28479229 28479251 11 83 1.5 4.5 3.0 2.8 105 chr3R 28479146 intergenic not near genes chr3R 28479198 intergenic not near genes chr3R 28479251 intergenic not near genes chr3R_11_28475001 chr3R_28475001 RAL-208 2045 chr3R 28484354 28484375 chr3R 28486271 28486292 47 1917 59.5 79.5 69.5 0.7 1938 chr3R 28484354 intergenic CG1894 + chr3R 28485323 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_47_28485001 chr3R_28485001 RAL-208 2046 chr3R 28625480 28625506 chr3R 28625571 28625595 9 91 4.5 3.0 3.8 1.9 115 chr3R 28625480 intron CG10011 - chr3R 28625538 intron CG10011 - chr3R 28625595 intron CG10011 - chr3R_9_28625001 chr3R_28625001 RAL-208 2047 chr3R 28670626 28670646 chr3R 28670712 28670732 8 86 1.0 6.5 3.8 1.7 106 chr3R 28670626 intergenic CG9989 +,CG33346 + chr3R 28670679 intergenic CG9989 +,CG33346 + chr3R 28670732 5` UTR CG9989 + chr3R_8_28670001 chr3R_28670001 RAL-208 2048 chr3R 28702931 28702957 chr3R 28703015 28703041 10 84 6.5 2.5 4.5 1.8 110 chr3R 28702931 intron htt + chr3R 28702986 intron htt + chr3R 28703041 intron htt + chr3R_10_28700001 chr3R_28700001 RAL-208 2049 chr3R 28753303 28753334 chr3R 28755106 28755137 5 1803 1.0 2.5 1.8 1.8 1834 chr3R 28753303 intergenic not near genes chr3R 28754220 intergenic not near genes chr3R 28755137 intergenic CG9997 - chr3R_5_28750001 chr3R_28750001 RAL-208 2050 chr3R 28763900 28763916 chr3R 28771343 28771359 Stalker4 8 7443 0.0 4.0 2.0 2.7 7459 chr3R 28763900 intergenic not near genes chr3R 28767630 intergenic not near genes chr3R 28771359 intergenic not near genes chr3R_8_28765001 chr3R_28765001 RAL-208 2051 chr3R 28785383 28785412 chr3R 28785468 28785497 7 84 5.0 5.0 5.0 1.2 114 chr3R 28785383 intergenic not near genes chr3R 28785440 intergenic not near genes chr3R 28785497 intergenic not near genes chr3R_7_28785001 chr3R_28785001 RAL-208 2052 chr3R 28792868 28792899 chr3R 28797963 28797994 jockey 11 5095 2.5 5.5 4.0 2.2 5126 chr3R 28792868 intergenic not near genes chr3R 28795431 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_11_28795001 chr3R_28795001 RAL-208 2053 chr3R 28830890 28830919 chr3R 28830968 28830997 14 78 5.5 5.5 5.5 2.2 107 chr3R 28830890 intron WASp - chr3R 28830944 intron WASp - chr3R 28830997 intron WASp - chr3R_14_28830001 chr3R_28830001 RAL-208 2054 chr3R 21907534 21907536 chr3R 28831799 28831801 39 6924266 18.5 14.5 16.5 2.2 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-208 2055 chr3R 21907534 21907536 chr3R 28831802 28831802 11 6924267 18.5 14.0 16.2 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-208 2056 chr3R 28947969 28947997 chr3R 28948081 28948109 6 112 3.5 4.0 3.8 1.2 140 chr3R 28947969 intron CG14521 - chr3R 28948039 intron CG14521 - chr3R 28948109 intron CG14521 - chr3R_6_28945001 chr3R_28945001 RAL-208 2057 chr3R 28957958 28957971 chr3R 28958034 28958047 4 76 1.5 5.0 3.2 1.0 89 chr3R 28957958 intron CG14521 - chr3R 28958002 intron CG14521 - chr3R 28958047 intron CG14521 - chr3R_4_28955001 chr3R_28955001 RAL-208 2058 chr3R 28968417 28968445 chr3R 28968494 28968522 11 77 1.0 6.0 3.5 2.4 105 chr3R 28968417 intron CG14521 - chr3R 28968470 intron CG14521 - chr3R 28968522 intron CG14521 - chr3R_11_28965001 chr3R_28965001 RAL-208 2059 chr3R 29034475 29034486 chr3R 29034556 29034569 5 82 2.5 2.5 2.5 1.4 94 chr3R 29034475 intergenic Cpsf100 +,CR45044 +,beta4GalNAcTB - chr3R 29034522 intergenic Cpsf100 +,CR45044 + chr3R 29034569 intergenic Cpsf100 +,CR45044 + chr3R_5_29030001 chr3R_29030001 RAL-208 2060 chr3R 29070056 29070078 chr3R 29070137 29070159 6 81 4.0 3.0 3.5 1.3 103 chr3R 29070056 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070159 intron CG11873 + chr3R_6_29070001 chr3R_29070001 RAL-208 2061 chr3R 29077815 29077844 chr3R 29077896 29077925 10 81 3.0 5.5 4.2 1.9 110 chr3R 29077815 intron CG11873 + chr3R 29077870 intron CG11873 + chr3R 29077925 intron CG11873 + chr3R_10_29075001 chr3R_29075001 RAL-208 2062 chr3R 29079399 29079405 chr3R 29080771 29080777 NOF 4 1372 1.5 0.0 0.8 2.2 1378 chr3R 29079399 intron CG11873 + chr3R 29080088 intron CG11873 + chr3R 29080777 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-208 2063 chr3R 29090748 29090783 chr3R 29090865 29090900 11 116 6.0 4.0 5.0 1.8 152 chr3R 29090748 intron CG11873 + chr3R 29090824 intron CG11873 + chr3R 29090900 intron CG11873 + chr3R_11_29090001 chr3R_29090001 RAL-208 2064 chr3R 29128471 29128500 chr3R 29128575 29128604 7 104 5.0 2.5 3.8 1.5 133 chr3R 29128471 intergenic dgt6 -,CG11880 + chr3R 29128538 intergenic dgt6 -,CG11880 + chr3R 29128604 3` UTR dgt6 - chr3R_7_29125001 chr3R_29125001 RAL-208 2065 chr3R 29207527 29207551 chr3R 29207719 29207743 6 192 2.0 10.0 6.0 0.9 216 chr3R 29207527 intergenic not near genes chr3R 29207635 intergenic not near genes chr3R 29207743 intergenic not near genes chr3R_6_29205001 chr3R_29205001 RAL-208 2066 chr3R 29213063 29213091 chr3R 29213146 29213174 11 83 2.0 4.5 3.2 2.6 111 chr3R 29213063 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-208 2067 chr3R 29237258 29237285 chr3R 29239279 29239306 5 2021 25.0 5.5 15.2 0.3 2048 chr3R 29237258 exon CG11951 - chr3R 29238282 intron CG11951 - chr3R 29239306 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-208 2068 chr3R 29238776 29238791 chr3R 29238889 29238904 5 113 3.0 6.0 4.5 0.9 128 chr3R 29238776 intergenic CG31427 -,CG11951 - chr3R 29238840 3` UTR CG31427 - chr3R 29238904 3` UTR CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-208 2069 chr3R 29239226 29239244 chr3R 29245517 29245535 5 6291 4.0 14.0 9.0 0.5 6309 chr3R 29239226 exon CG31427 - chr3R 29242380 exon CG31445 - chr3R 29245535 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-208 2070 chr3R 29240314 29240343 chr3R 29240398 29240427 9 84 7.0 1.0 4.0 1.8 113 chr3R 29240314 5` UTR CG31427 - chr3R 29240370 intergenic CG31427 -,CG31445 - chr3R 29240427 intergenic CG31427 -,CG31445 - chr3R_9_29240001 chr3R_29240001 RAL-208 2071 chr3R 29256267 29256300 chr3R 29256347 29256380 13 80 3.5 2.5 3.0 3.2 113 chr3R 29256267 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256380 intergenic CG45544 + chr3R_13_29255001 chr3R_29255001 RAL-208 2072 chr3R 5297078 5297079 chr3R 29256919 29256920 6 23959841 19.0 9.5 14.2 0.4 23959842 chr3R 5297078 intron mtd - chr3R 17276999 intergenic not near genes chr3R 29256920 3` UTR CG45544 + chr3R_6_17275001 chr3R_17275001 RAL-208 2073 chr3R 29263505 29263531 chr3R 29263581 29263610 8 78 3.5 4.5 4.0 1.6 105 chr3R 29263505 intergenic not near genes chr3R 29263558 intergenic not near genes chr3R 29263610 intergenic not near genes chr3R_8_29260001 chr3R_29260001 RAL-208 2074 chr3R 29282821 29282831 chr3R 29282901 29282911 4 79 7.5 6.5 7.0 0.5 90 chr3R 29282821 intergenic not near genes chr3R 29282866 intergenic not near genes chr3R 29282911 intergenic not near genes chr3R_4_29280001 chr3R_29280001 RAL-208 2075 chr3R 29319821 29319860 chr3R 29320140 29320179 jockey 8 319 1.0 2.5 1.8 2.9 358 chr3R 29319821 intergenic Cnx99A - chr3R 29320000 intergenic Cnx99A - chr3R 29320179 intergenic not near genes chr3R_8_29320001 chr3R_29320001 RAL-208 2076 chr3R 29332282 29332308 chr3R 29332359 29332384 10 76 1.5 2.5 2.0 3.3 102 chr3R 29332282 intergenic not near genes chr3R 29332333 intergenic not near genes chr3R 29332384 intergenic not near genes chr3R_10_29330001 chr3R_29330001 RAL-208 2077 chr3R 29346174 29346206 chr3R 29346264 29346293 9 90 2.0 3.0 2.5 2.6 119 chr3R 29346174 intergenic not near genes chr3R 29346234 intergenic not near genes chr3R 29346293 intergenic not near genes chr3R_9_29345001 chr3R_29345001 RAL-208 2078 chr3R 29356065 29356077 chr3R 29356146 29356153 11 80 2.0 4.5 3.2 2.6 88 chr3R 29356065 intergenic CR45547 - chr3R 29356109 intergenic CR45547 - chr3R 29356153 3` UTR CR45547 - chr3R_11_29355001 chr3R_29355001 RAL-208 2079 chr3R 29402988 29403007 chr3R 29403081 29403102 6 95 3.5 3.0 3.2 1.4 114 chr3R 29402988 intron Ptp99A + chr3R 29403045 intron Ptp99A + chr3R 29403102 intron Ptp99A + chr3R_6_29400001 chr3R_29400001 RAL-208 2080 chr3R 29406613 29406650 chr3R 29407898 29407935 jockey 19 1286 5.0 3.0 4.0 3.8 1322 chr3R 29406613 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407935 intron Ptp99A + chr3R_19_29405001 chr3R_29405001 RAL-208 2081 chr3R 29429789 29429795 chr3R 29429867 29429873 4 78 3.5 2.5 3.0 1.0 84 chr3R 29429789 intron Ptp99A + chr3R 29429831 intron Ptp99A + chr3R 29429873 intron Ptp99A + chr3R_4_29425001 chr3R_29425001 RAL-208 2082 chr3R 29459837 29459851 chr3R 29459918 29459932 5 81 4.5 2.0 3.2 1.2 95 chr3R 29459837 intron Ptp99A + chr3R 29459884 intron Ptp99A + chr3R 29459932 intron Ptp99A + chr3R_5_29455001 chr3R_29455001 RAL-208 2083 chr3R 29471923 29472038 chr3R 29472003 29472131 20 84 0.0 0.0 0.0 20.0 208 chr3R 29471923 intron Ptp99A + chr3R 29472027 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_20_29470001 chr3R_29470001 RAL-208 2084 chr3R 29538058 29538180 chr3R 29538134 29538260 10 79 0.0 0.0 0.0 10.0 202 chr3R 29538058 intergenic not near genes chr3R 29538159 intergenic not near genes chr3R 29538260 intergenic not near genes chr3R_10_29535001 chr3R_29535001 RAL-208 2085 chr3R 29539438 29539456 chr3R 29539514 29539531 8 76 3.0 0.0 1.5 3.2 93 chr3R 29539438 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539531 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-208 2086 chr3R 29566382 29566409 chr3R 29566459 29566485 10 76 2.5 5.0 3.8 2.1 103 chr3R 29566382 intergenic not near genes chr3R 29566434 intergenic not near genes chr3R 29566485 intergenic not near genes chr3R_10_29565001 chr3R_29565001 RAL-208 2087 chr3R 29576742 29576752 chr3R 29576848 29576859 4 106 1.0 0.0 0.5 2.7 117 chr3R 29576742 intergenic not near genes chr3R 29576800 intergenic not near genes chr3R 29576859 intergenic not near genes chr3R_4_29575001 chr3R_29575001 RAL-208 2088 chr3R 29590374 29590403 chr3R 29590467 29590495 16 93 2.0 2.0 2.0 5.3 121 chr3R 29590374 intron CG31041 - chr3R 29590434 intron CG31041 - chr3R 29590495 intron CG31041 - chr3R_16_29590001 chr3R_29590001 RAL-208 2089 chr3R 29627283 29627313 chr3R 29627695 29627725 14 411 3.0 3.0 3.0 3.5 442 chr3R 29627283 intergenic not near genes chr3R 29627504 intergenic not near genes chr3R 29627725 intergenic not near genes chr3R_14_29625001 chr3R_29625001 RAL-208 2090 chr3R 29655658 29655663 chr3R 29655737 29655742 4 79 3.5 5.0 4.2 0.8 84 chr3R 29655658 intron Dop1R2 - chr3R 29655700 intron Dop1R2 - chr3R 29655742 intron Dop1R2 - chr3R_4_29655001 chr3R_29655001 RAL-208 2091 chr3R 29719415 29719425 chr3R 29719501 29719510 5 85 8.5 12.0 10.2 0.4 95 chr3R 29719415 intron CG15506 + chr3R 29719462 intron CG15506 + chr3R 29719510 intron CG15506 + chr3R_5_29715001 chr3R_29715001 RAL-208 2092 chr3R 29738264 29738300 chr3R 29739731 29739767 hobo 16 1466 4.5 4.0 4.2 3.1 1503 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739767 5` UTR CG1969 + chr3R_16_29735001 chr3R_29735001 RAL-208 2093 chr3R 29758936 29758970 chr3R 29759014 29759048 10 77 5.5 6.0 5.8 1.5 112 chr3R 29758936 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759048 intergenic CR44953 - chr3R_10_29755001 chr3R_29755001 RAL-208 2094 chr3R 29760360 29760388 chr3R 29761561 29761589 pogo 7 1201 1.5 2.5 2.0 2.3 1229 chr3R 29760360 intergenic not near genes chr3R 29760974 intergenic not near genes chr3R 29761589 intergenic not near genes chr3R_7_29760001 chr3R_29760001 RAL-208 2095 chr3R 29854828 29854854 chr3R 29854907 29854934 19 79 2.0 4.5 3.2 4.5 106 chr3R 29854828 3` UTR dgt1 - chr3R 29854881 exon dgt1 - chr3R 29854934 exon dgt1 - chr3R_19_29850001 chr3R_29850001 RAL-208 2096 chr3R 29882017 29882049 chr3R 29891174 29891206 roo 14 9157 5.5 4.0 4.8 2.4 9189 chr3R 29882017 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_14_29885001 chr3R_29885001 RAL-208 2097 chr3R 29950575 29950597 chr3R 29950651 29950673 6 76 0.0 2.5 1.2 2.7 98 chr3R 29950575 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950673 intergenic TkR99D - chr3R_6_29950001 chr3R_29950001 RAL-208 2098 chr3R 29963484 29963511 chr3R 29963586 29963612 8 102 1.0 1.5 1.2 3.6 128 chr3R 29963484 intron TkR99D - chr3R 29963548 intron TkR99D - chr3R 29963612 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-208 2099 chr3R 29966067 29966070 chr3R 29966143 29966147 4 77 1.5 7.0 4.2 0.8 80 chr3R 29966067 intron TkR99D - chr3R 29966107 intron TkR99D - chr3R 29966147 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-208 2100 chr3R 15095973 15095980 chr3R 29976111 29976118 6 14880138 9.5 8.0 8.8 0.6 14880145 chr3R 15095973 3` UTR CG42788 - chr3R 22536046 intron CG5326 - chr3R 29976118 intergenic not near genes chr3R_6_22535001 chr3R_22535001 RAL-208 2101 chr3R 30013676 30013703 chr3R 30013759 30013786 5 83 3.5 6.5 5.0 0.8 110 chr3R 30013676 intron CG7920 - chr3R 30013731 intron CG7920 - chr3R 30013786 intron CG7920 - chr3R_5_30010001 chr3R_30010001 RAL-208 2102 chr3R 30032161 30032176 chr3R 30032240 30032255 5 79 7.0 2.5 4.8 0.9 94 chr3R 30032161 intron Axn + chr3R 30032208 intron Axn + chr3R 30032255 intron Axn + chr3R_5_30030001 chr3R_30030001 RAL-208 2103 chr3R 30084852 30084886 chr3R 30086318 30086353 hobo 11 1467 2.5 4.5 3.5 2.4 1501 chr3R 30084852 intron sima + chr3R 30085602 intron sima + chr3R 30086353 intron sima + chr3R_11_30085001 chr3R_30085001 RAL-208 2104 chr3R 30170760 30170792 chr3R 30170847 30170879 16 87 4.5 3.5 4.0 3.2 119 chr3R 30170760 intron CG31028 - chr3R 30170820 intron CG31028 - chr3R 30170879 intron CG31028 - chr3R_16_30170001 chr3R_30170001 RAL-208 2105 chr3R 30177742 30177767 chr3R 30177859 30177881 12 116 2.0 4.0 3.0 3.0 139 chr3R 30177742 intergenic CG1983 -,CG15530 + chr3R 30177812 intergenic CG15530 +,CG1983 - chr3R 30177881 5` UTR CG15530 + chr3R_12_30175001 chr3R_30175001 RAL-208 2106 chr3R 30183217 30183245 chr3R 30183326 30183354 6 109 3.0 3.5 3.2 1.4 137 chr3R 30183217 intergenic not near genes chr3R 30183286 intergenic not near genes chr3R 30183354 intergenic CR44262 - chr3R_6_30180001 chr3R_30180001 RAL-208 2107 chr3R 30210663 30210665 chr3R 30210741 30210745 5 80 0.0 8.0 4.0 1.0 82 chr3R 30210663 intergenic CecA1 +,Anp + chr3R 30210704 intergenic CecA1 +,Anp + chr3R 30210745 intergenic CecA1 +,Anp + chr3R_5_30210001 chr3R_30210001 RAL-208 2108 chr3R 30238759 30238797 chr3R 30239923 30239961 1360 9 1164 1.0 1.5 1.2 4.1 1202 chr3R 30238759 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239961 intergenic not near genes chr3R_9_30235001 chr3R_30235001 RAL-208 2109 chr3R 30268245 30268445 chr3R 30268324 30268526 19 80 5.0 3.0 4.0 3.8 281 chr3R 30268245 intergenic not near genes chr3R 30268386 intergenic not near genes chr3R 30268526 intergenic not near genes chr3R_19_30265001 chr3R_30265001 RAL-208 2110 chr3R 30307121 30307148 chr3R 30307202 30307229 15 81 0.0 2.5 1.2 6.8 108 chr3R 30307121 intron hdc + chr3R 30307175 intron hdc + chr3R 30307229 intron hdc + chr3R_15_30305001 chr3R_30305001 RAL-208 2111 chr3R 30317338 30317356 chr3R 30324929 30324948 roo 5 7591 1.5 5.0 3.2 1.2 7610 chr3R 30317338 intron hdc + chr3R 30321143 intron hdc + chr3R 30324948 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-208 2112 chr3R 30332040 30332062 chr3R 30332119 30332141 4 79 5.5 6.0 5.8 0.6 101 chr3R 30332040 intron hdc + chr3R 30332090 intron hdc + chr3R 30332141 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-208 2113 chr3R 30375549 30375568 chr3R 30383172 30383191 412 4 7623 3.0 2.0 2.5 1.1 7642 chr3R 30375549 intergenic not near genes chr3R 30379370 intergenic not near genes chr3R 30383191 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-208 2114 chr3R 30396215 30396247 chr3R 30404481 30404513 roo 10 8266 3.5 3.5 3.5 2.2 8298 chr3R 30396215 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_10_30400001 chr3R_30400001 RAL-208 2115 chr3R 30452154 30452181 chr3R 30452274 30452297 13 119 3.5 2.5 3.0 3.2 143 chr3R 30452154 intron aralar1 - chr3R 30452226 intron aralar1 - chr3R 30452297 intron aralar1 - chr3R_13_30450001 chr3R_30450001 RAL-208 2116 chr3R 30456390 30456424 chr3R 30456470 30456504 10 80 2.0 2.5 2.2 3.1 114 chr3R 30456390 intergenic CG2224 - chr3R 30456447 3` UTR CG2224 - chr3R 30456504 3` UTR CG2224 - chr3R_10_30455001 chr3R_30455001 RAL-208 2117 chr3R 30458011 30458047 chr3R 30458090 30458126 14 79 3.0 6.5 4.8 2.4 115 chr3R 30458011 intron CG2224 - chr3R 30458068 intron CG2224 - chr3R 30458126 intron CG2224 - chr3R_14_30455001 chr3R_30455001 RAL-208 2118 chr3R 30480472 30480513 chr3R 30482940 30482981 jockey 15 2468 3.5 2.5 3.0 3.8 2509 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 RAL-208 2119 chr3R 30498418 30498435 chr3R 30498618 30498635 6 200 0.0 6.5 3.2 1.4 217 chr3R 30498418 intron PH4alphaNE1 - chr3R 30498526 intron PH4alphaNE1 - chr3R 30498635 intron PH4alphaNE1 - chr3R_6_30495001 chr3R_30495001 RAL-208 2120 chr3R 30532737 30532765 chr3R 30532810 30532842 8 76 7.5 8.5 8.0 0.9 105 chr3R 30532737 intron tmod + chr3R 30532790 intron tmod + chr3R 30532842 intron tmod + chr3R_8_30530001 chr3R_30530001 RAL-208 2121 chr3R 30539712 30539738 chr3R 30540357 30540381 7 645 0.0 3.5 1.8 2.5 669 chr3R 30539712 intron tmod + chr3R 30540046 intron tmod + chr3R 30540381 intron tmod + chr3R_7_30540001 chr3R_30540001 RAL-208 2122 chr3R 30549012 30549039 chr3R 30549104 30549131 17 92 3.5 6.0 4.8 2.9 119 chr3R 30549012 intron tmod + chr3R 30549072 intron tmod + chr3R 30549131 intron tmod + chr3R_17_30545001 chr3R_30545001 RAL-208 2123 chr3R 30564328 30564348 chr3R 30564411 30564430 6 83 2.5 4.5 3.5 1.3 102 chr3R 30564328 intron tmod + chr3R 30564379 intron tmod + chr3R 30564430 intron tmod + chr3R_6_30560001 chr3R_30560001 RAL-208 2124 chr3R 30620930 30620941 chr3R 30621085 30621095 6 154 7.0 3.0 5.0 1.0 165 chr3R 30620930 intron CG44954 - chr3R 30621012 intron CG44954 - chr3R 30621095 intron CG44954 - chr3R_6_30620001 chr3R_30620001 RAL-208 2125 chr3R 30627602 30627638 chr3R 30627682 30627718 30 79 3.0 0.5 1.8 10.7 116 chr3R 30627602 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_30_30625001 chr3R_30625001 RAL-208 2126 chr3R 30649869 30649878 chr3R 30649950 30649959 5 81 1.5 5.0 3.2 1.2 90 chr3R 30649869 3` UTR CG34432 + chr3R 30649914 intergenic CG34432 +,CG34433 + chr3R 30649959 intergenic CG34433 +,CG34432 + chr3R_5_30645001 chr3R_30645001 RAL-208 2127 chr3R 30650809 30650811 chr3R 30650906 30650908 4 97 0.5 0.0 0.2 3.3 99 chr3R 30650809 3` UTR CG34433 + chr3R 30650858 3` UTR CG34433 + chr3R 30650908 intergenic CG34433 + chr3R_4_30650001 chr3R_30650001 RAL-208 2128 chr3R 30679520 30679552 chr3R 30686989 30687021 blood 4 7469 2.5 5.0 3.8 0.8 7501 chr3R 30679520 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-208 2129 chr3R 30812724 30812755 chr3R 30812812 30812843 9 88 0.0 2.5 1.2 4.1 119 chr3R 30812724 intron cindr + chr3R 30812784 intron cindr + chr3R 30812843 intron cindr + chr3R_9_30810001 chr3R_30810001 RAL-208 2130 chr3R 30818817 30818835 chr3R 30820381 30820400 1360 5 1564 2.5 4.5 3.5 1.1 1583 chr3R 30818817 intron cindr + chr3R 30819608 intron cindr + chr3R 30820400 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-208 2131 chr3R 30859405 30859427 chr3R 30859483 30859505 7 78 1.5 2.5 2.0 2.3 100 chr3R 30859405 intergenic not near genes chr3R 30859455 intergenic not near genes chr3R 30859505 intergenic not near genes chr3R_7_30855001 chr3R_30855001 RAL-208 2132 chr3R 31025351 31025354 chr3R 31025436 31025444 5 89 2.5 4.5 3.5 1.1 93 chr3R 31025351 intergenic not near genes chr3R 31025398 intergenic not near genes chr3R 31025444 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-208 2133 chr3R 31074234 31074260 chr3R 31081832 31081858 springer 6 7598 3.0 1.0 2.0 2.0 7624 chr3R 31074234 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081858 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-208 2134 chr3R 31084905 31084933 chr3R 31084981 31085009 9 76 0.5 1.5 1.0 4.5 104 chr3R 31084905 intergenic not near genes chr3R 31084957 intergenic not near genes chr3R 31085009 intergenic not near genes chr3R_9_31080001 chr3R_31080001 RAL-208 2135 chr3R 31102049 31102071 chr3R 31102131 31102153 6 82 0.0 1.5 0.8 3.3 104 chr3R 31102049 intergenic not near genes chr3R 31102101 intergenic not near genes chr3R 31102153 intergenic not near genes chr3R_6_31100001 chr3R_31100001 RAL-208 2136 chr3R 31279371 31279409 chr3R 31285562 31285599 diver 7 6191 3.5 2.0 2.8 1.8 6228 chr3R 31279371 intergenic not near genes chr3R 31282485 intergenic not near genes chr3R 31285599 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-208 2137 chr3R 31295361 31295376 chr3R 31295447 31295462 4 86 1.5 1.0 1.2 1.8 101 chr3R 31295361 intergenic not near genes chr3R 31295412 intergenic not near genes chr3R 31295462 intergenic not near genes chr3R_4_31295001 chr3R_31295001 RAL-208 2138 chr3R 31413091 31413123 chr3R 31418291 31418323 copia 7 5200 1.0 3.0 2.0 2.3 5232 chr3R 31413091 intron Gprk2 + chr3R 31415707 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-208 2139 chr3R 31426878 31426913 chr3R 31426970 31427005 21 92 1.5 4.0 2.8 5.5 127 chr3R 31426878 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427005 intron Gprk2 + chr3R_21_31425001 chr3R_31425001 RAL-208 2140 chr3R 31435362 31435378 chr3R 31435514 31435530 4 152 7.5 2.5 5.0 0.7 168 chr3R 31435362 intron Gprk2 + chr3R 31435446 intron Gprk2 + chr3R 31435530 intron Gprk2 + chr3R_4_31435001 chr3R_31435001 RAL-208 2141 chr3R 31442276 31442287 chr3R 31442361 31442372 7 85 3.0 3.5 3.2 1.7 96 chr3R 31442276 intron Gprk2 + chr3R 31442324 intron Gprk2 + chr3R 31442372 intron Gprk2 + chr3R_7_31440001 chr3R_31440001 RAL-208 2142 chr3R 31448606 31448626 chr3R 31448682 31448700 7 75 5.5 3.5 4.5 1.3 94 chr3R 31448606 intron Gprk2 + chr3R 31448653 intron Gprk2 + chr3R 31448700 intron Gprk2 + chr3R_7_31445001 chr3R_31445001 RAL-208 2143 chr3R 31539347 31539354 chr3R 31539430 31539439 5 84 1.5 3.0 2.2 1.6 92 chr3R 31539347 intergenic not near genes chr3R 31539393 intergenic not near genes chr3R 31539439 intergenic not near genes chr3R_5_31535001 chr3R_31535001 RAL-208 2144 chr3R 31539864 31539884 chr3R 31539949 31539969 7 85 1.0 1.5 1.2 3.2 105 chr3R 31539864 intergenic not near genes chr3R 31539916 intergenic not near genes chr3R 31539969 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-208 2145 chr3R 31627900 31627928 chr3R 31628048 31628076 18 146 7.5 2.0 4.8 3.1 176 chr3R 31627900 intron kek6 + chr3R 31627988 intron kek6 + chr3R 31628076 intron kek6 + chr3R_18_31625001 chr3R_31625001 RAL-208 2146 chr3R 31643219 31643238 chr3R 31643297 31643317 16 79 3.5 7.5 5.5 2.5 98 chr3R 31643219 intron kek6 + chr3R 31643268 intron kek6 + chr3R 31643317 intron kek6 + chr3R_16_31640001 chr3R_31640001 RAL-208 2147 chr3R 31691531 31691561 chr3R 31696297 31696327 Doc 9 4765 3.0 8.5 5.8 1.3 4796 chr3R 31691531 intergenic not near genes chr3R 31693929 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-208 2148 chr3R 31808798 31808821 chr3R 31808917 31808940 4 119 3.0 0.0 1.5 1.6 142 chr3R 31808798 intron CG11576 - chr3R 31808869 intron CG11576 - chr3R 31808940 intron CG11576 - chr3R_4_31805001 chr3R_31805001 RAL-208 2149 chr3R 31831538 31831568 chr3R 31831617 31831643 7 78 1.5 6.5 4.0 1.4 105 chr3R 31831538 intron RhoGAP100F + chr3R 31831590 intron RhoGAP100F + chr3R 31831643 intron RhoGAP100F + chr3R_7_31830001 chr3R_31830001 RAL-208 2150 chr3R 31897846 31897875 chr3R 31897986 31898011 7 139 3.0 2.0 2.5 2.0 165 chr3R 31897846 intron heph - chr3R 31897928 intron heph - chr3R 31898011 intron heph - chr3R_7_31895001 chr3R_31895001 RAL-208 2151 chr3R 31911698 31911708 chr3R 31911784 31911794 7 86 2.5 6.5 4.5 1.3 96 chr3R 31911698 intron heph - chr3R 31911746 intron heph - chr3R 31911794 intron heph - chr3R_7_31910001 chr3R_31910001 RAL-208 2152 chr3R 31930558 31930587 chr3R 31930640 31930669 15 82 6.0 7.5 6.8 1.9 111 chr3R 31930558 intron heph - chr3R 31930614 intron heph - chr3R 31930669 intron heph - chr3R_15_31930001 chr3R_31930001 RAL-208 2153 chr3R 31931207 31931213 chr3R 31931290 31931295 5 83 5.5 3.0 4.2 1.0 88 chr3R 31931207 intron heph - chr3R 31931251 intron heph - chr3R 31931295 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-208 2154 chr3R 31949533 31949566 chr3R 31949879 31949912 12 346 1.0 5.0 3.0 3.0 379 chr3R 31949533 intron heph - chr3R 31949722 intron heph - chr3R 31949912 intron heph - chr3R_12_31945001 chr3R_31945001 RAL-208 2155 chr3R 31958683 31958718 chr3R 31958788 31958823 7 105 3.0 3.5 3.2 1.7 140 chr3R 31958683 intron heph - chr3R 31958753 intron heph - chr3R 31958823 intron heph - chr3R_7_31955001 chr3R_31955001 RAL-208 2156 chr3R 31986249 31986254 chr3R 31986711 31986716 5 461 2.0 2.5 2.2 1.6 467 chr3R 31986249 intron,intron heph -,CG2003 + chr3R 31986482 intron,intron heph -,CG2003 + chr3R 31986716 intron,intron heph -,CG2003 + chr3R_5_31985001 chr3R_31985001 RAL-208 2157 chr3R 32016714 32016735 chr3R 32016793 32016814 13 78 2.5 3.5 3.0 3.2 100 chr3R 32016714 5` UTR CR45557 + chr3R 32016764 5` UTR CR45557 + chr3R 32016814 5` UTR CR45557 + chr3R_13_32015001 chr3R_32015001 RAL-208 2158 chr3R 32034260 32034292 chr3R 32034343 32034375 22 83 3.5 1.5 2.5 6.3 115 chr3R 32034260 intergenic not near genes chr3R 32034318 intergenic not near genes chr3R 32034375 intergenic not near genes chr3R_22_32030001 chr3R_32030001 RAL-208 2159 chr3R 32061687 32061706 chr3R 32062031 32062050 6 344 13.5 16.5 15.0 0.4 363 chr3R 32061687 intron Map205 - chr3R 32061868 intron Map205 - chr3R 32062050 intron Map205 - chr3R_6_32060001 chr3R_32060001 RAL-208 2160 chr4 76497 76507 chr4 81940 81950 I-element 8 5443 4.5 2.0 3.2 1.9 5453 chr4 76497 intron pan + chr4 79224 intron pan + chr4 81950 intron pan + chr4_8_75001 chr4_75001 RAL-208 2161 chr4 257403 257437 chr4 257573 257607 10 170 2.5 0.5 1.5 4.0 204 chr4 257403 exon RhoGAP102A + chr4 257505 intron RhoGAP102A + chr4 257607 intron RhoGAP102A + chr4_10_255001 chr4_255001 RAL-208 2162 chr4 319996 320019 chr4 328172 328195 Stalker2 5 8176 2.0 1.5 1.8 1.8 8199 chr4 319996 3` UTR CG32850 + chr4 324096 intron CG32850 + chr4 328195 3` UTR,3` UTR CG32850 +,PMCA - chr4_5_320001 chr4_320001 RAL-208 2163 chr4 412658 412691 chr4 412743 412776 9 85 7.5 4.5 6.0 1.3 118 chr4 412658 intergenic not near genes chr4 412717 intergenic not near genes chr4 412776 intergenic not near genes chr4_9_410001 chr4_410001 RAL-208 2164 chr4 671607 671635 chr4 680189 680215 Tirant 16 8583 2.5 3.0 2.8 4.2 8608 chr4 671607 intron CG11360 + chr4 675911 intron CG11360 + chr4 680215 intron CG11360 + chr4_16_675001 chr4_675001 RAL-208 2165 chr4 896784 896815 chr4 896861 896892 15 77 4.0 3.5 3.8 3.1 108 chr4 896784 intron unc-13 - chr4 896838 intron unc-13 - chr4 896892 intron unc-13 - chr4_15_895001 chr4_895001 RAL-208 2166 chr4 896651 896676 chr4 898314 898339 INE-1 13 1663 29.0 10.5 19.8 0.6 1688 chr4 896651 intron unc-13 - chr4 897495 intron unc-13 - chr4 898339 intron unc-13 - chr4_13_895001 chr4_895001 RAL-208 2167 chr4 1109881 1109905 chr4 1109972 1109996 4 92 25.5 21.5 23.5 0.2 115 chr4 1109881 intron sv + chr4 1109938 intron sv + chr4 1109996 intron sv + chr4_4_1105001 chr4_1105001 RAL-208 2168 chr4 1231229 1231250 chr4 1231361 1231382 10 131 2.0 0.5 1.2 4.5 153 chr4 1231229 intron Caps + chr4 1231306 intron Caps + chr4 1231382 intron Caps + chr4_10_1230001 chr4_1230001 RAL-208 2169 chr4 1250562 1250568 chr4 1250647 1250654 5 86 6.5 2.5 4.5 0.9 92 chr4 1250562 intron Caps + chr4 1250608 intron Caps + chr4 1250654 intron Caps + chr4_5_1250001 chr4_1250001 RAL-208 2170 chrX 318470 318497 chrX 323555 323583 flea 9 5086 4.5 2.5 3.5 2.0 5113 chrX 318470 intron,intron CG3777 +,CG32816 - chrX 321026 intron,intron CG3777 +,CG32816 - chrX 323583 intron,intron CG3777 +,CG32816 - chrX_9_320001 chrX_320001 RAL-208 2171 chrX 365272 365302 chrX 365384 365414 16 112 4.5 2.0 3.2 3.8 142 chrX 365272 intron,intron CG32816 -,yar + chrX 365343 intron,intron CG32816 -,yar + chrX 365414 intron,intron CG32816 -,yar + chrX_16_365001 chrX_365001 RAL-208 2172 chrX 428420 428449 chrX 434605 434633 3S18 9 6185 4.0 1.5 2.8 2.4 6213 chrX 428420 intron CG32816 - chrX 431526 intron CG32816 - chrX 434633 intron CG32816 - chrX_9_430001 chrX_430001 RAL-208 2173 chrX 440996 441023 chrX 441074 441101 11 78 1.0 3.5 2.2 3.4 105 chrX 440996 intron CG32816 - chrX 441048 intron CG32816 - chrX 441101 intron CG32816 - chrX_11_440001 chrX_440001 RAL-208 2174 chrX 551423 551453 chrX 558982 559015 412 16 7561 4.5 0.5 2.5 4.6 7592 chrX 551423 intron Appl + chrX 555219 intron Appl + chrX 559015 intron Appl + chrX_16_555001 chrX_555001 RAL-208 2175 chrX 611138 611166 chrX 611228 611256 15 90 6.0 5.0 5.5 2.3 118 chrX 611138 intron CG13366 - chrX 611197 intron CG13366 - chrX 611256 intron CG13366 - chrX_15_610001 chrX_610001 RAL-208 2176 chrX 667653 667682 chrX 667736 667766 13 84 3.0 3.0 3.0 3.2 113 chrX 667653 intergenic not near genes chrX 667710 intergenic not near genes chrX 667766 intergenic not near genes chrX_13_665001 chrX_665001 RAL-208 2177 chrX 670266 670290 chrX 670346 670370 8 80 0.0 2.5 1.2 3.6 104 chrX 670266 intergenic not near genes chrX 670318 intergenic not near genes chrX 670370 intergenic not near genes chrX_8_670001 chrX_670001 RAL-208 2178 chrX 680846 680868 chrX 680929 680951 8 83 2.0 6.0 4.0 1.6 105 chrX 680846 intergenic not near genes chrX 680898 intergenic not near genes chrX 680951 intergenic not near genes chrX_8_680001 chrX_680001 RAL-208 2179 chrX 706803 706826 chrX 707167 707189 7 363 0.0 1.5 0.8 3.9 386 chrX 706803 intron sdk + chrX 706996 intron sdk + chrX 707189 intron sdk + chrX_7_705001 chrX_705001 RAL-208 2180 chrX 802295 802320 chrX 802372 802397 5 77 1.0 6.0 3.5 1.1 102 chrX 802295 exon CG13359 - chrX 802346 exon CG13359 - chrX 802397 exon CG13359 - chrX_5_800001 chrX_800001 RAL-208 2181 chrX 812272 812299 chrX 817903 817930 297 4 5631 3.0 5.5 4.2 0.8 5658 chrX 812272 intron CG43867 - chrX 815101 intron CG43867 - chrX 817930 intron CG43867 - chrX_4_815001 chrX_815001 RAL-208 2182 chrX 827599 827632 chrX 835391 835424 roo 10 7792 4.5 3.0 3.8 2.1 7825 chrX 827599 intron CG43867 - chrX 831512 intron CG43867 - chrX 835424 intron CG43867 - chrX_10_830001 chrX_830001 RAL-208 2183 chrX 890636 890655 chrX 890726 890745 6 90 2.0 1.0 1.5 2.4 109 chrX 890636 intron CG43867 - chrX 890690 intron CG43867 - chrX 890745 intron CG43867 - chrX_6_890001 chrX_890001 RAL-208 2184 chrX 891522 891545 chrX 891980 892003 15 458 3.5 2.0 2.8 3.9 481 chrX 891522 intron CG43867 - chrX 891762 intron CG43867 - chrX 892003 intron CG43867 - chrX_15_890001 chrX_890001 RAL-208 2185 chrX 906708 906734 chrX 908497 908523 S-element 11 1789 3.5 6.5 5.0 1.8 1815 chrX 906708 intron CG43867 - chrX 907616 intron CG43867 - chrX 908523 intron CG43867 - chrX_11_905001 chrX_905001 RAL-208 2186 chrX 1053117 1053123 chrX 16983076 16983076 17 15929958 8.5 4.0 6.2 2.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_17_9015001 chrX_9015001 RAL-208 2187 chrX 1078466 1078492 chrX 1078560 1078586 8 94 1.0 1.5 1.2 3.6 120 chrX 1078466 intron,intron CR44779 +,CG3655 - chrX 1078526 intron,intron CR44779 +,CG3655 - chrX 1078586 intron,intron CR44779 +,CG3655 - chrX_8_1075001 chrX_1075001 RAL-208 2188 chrX 1218482 1218486 chrX 1218576 1218580 4 93 2.0 5.5 3.8 0.8 98 chrX 1218482 3` UTR CG3638 - chrX 1218531 3` UTR CG3638 - chrX 1218580 3` UTR CG3638 - chrX_4_1215001 chrX_1215001 RAL-208 2189 chrX 1357781 1357806 chrX 1367951 1367976 Doc 9 10170 4.0 4.5 4.2 1.7 10195 chrX 1357781 intergenic png - chrX 1362878 intergenic not near genes chrX 1367976 intergenic not near genes chrX_9_1360001 chrX_1360001 RAL-208 2190 chrX 1515232 1515252 chrX 1515309 1515329 7 77 3.0 2.0 2.5 2.0 97 chrX 1515232 intron inc + chrX 1515280 intron inc + chrX 1515329 intron inc + chrX_7_1515001 chrX_1515001 RAL-208 2191 chrX 1554517 1554542 chrX 1554674 1554699 5 157 14.0 12.5 13.2 0.4 182 chrX 1554517 exon Mur2B - chrX 1554608 intron Mur2B - chrX 1554699 exon Mur2B - chrX_5_1550001 chrX_1550001 RAL-208 2192 chrX 1555384 1555417 chrX 1555476 1555512 23 94 14.0 12.0 13.0 1.6 128 chrX 1555384 exon Mur2B - chrX 1555448 exon Mur2B - chrX 1555512 exon Mur2B - chrX_23_1555001 chrX_1555001 RAL-208 2193 chrX 1903356 1903368 chrX 1903438 1903448 8 81 5.0 4.0 4.5 1.5 92 chrX 1903356 5` UTR CR43864 + chrX 1903402 5` UTR CR43864 + chrX 1903448 5` UTR CR43864 + chrX_8_1900001 chrX_1900001 RAL-208 2194 chrX 1930544 1930569 chrX 1938114 1938140 opus 10 7571 2.0 2.0 2.0 3.3 7596 chrX 1930544 intergenic CG11596 + chrX 1934342 intergenic not near genes chrX 1938140 3` UTR CG3857 - chrX_10_1930001 chrX_1930001 RAL-208 2195 chrX 1954885 1954908 chrX 1962825 1962845 Stalker2 5 7939 3.5 2.0 2.8 1.3 7960 chrX 1954885 intron Hr4 + chrX 1958865 intron Hr4 + chrX 1962845 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-208 2196 chrX 2069367 2069402 chrX 2069466 2069502 9 100 2.5 1.5 2.0 3.0 135 chrX 2069367 intron,exon CG4199 -,CG4194 + chrX 2069434 intron,3` UTR CG4199 -,CG4194 + chrX 2069502 intron,3` UTR CG4199 -,CG4194 + chrX_9_2065001 chrX_2065001 RAL-208 2197 chrX 2089332 2089350 chrX 2089585 2089606 11 256 4.0 3.5 3.8 2.3 274 chrX 2089332 intron Unc-76 + chrX 2089469 intron Unc-76 + chrX 2089606 intron Unc-76 + chrX_11_2085001 chrX_2085001 RAL-208 2198 chrX 2096366 2096382 chrX 2096459 2096475 4 93 1.5 1.0 1.2 1.8 109 chrX 2096366 intron csw + chrX 2096420 intron csw + chrX 2096475 intron csw + chrX_4_2095001 chrX_2095001 RAL-208 2199 chrX 2353838 2353862 chrX 2353912 2353939 13 77 3.5 3.5 3.5 2.9 101 chrX 2353838 intron ptr - chrX 2353888 intron ptr - chrX 2353939 intron ptr - chrX_13_2350001 chrX_2350001 RAL-208 2200 chrX 2385735 2385748 chrX 2385812 2385825 4 77 4.5 1.0 2.8 1.1 90 chrX 2385735 intron PsGEF - chrX 2385780 intron PsGEF - chrX 2385825 intron PsGEF - chrX_4_2385001 chrX_2385001 RAL-208 2201 chrX 2399837 2399858 chrX 2408190 2408211 roo 5 8353 7.0 0.0 3.5 1.1 8374 chrX 2399837 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408211 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-208 2202 chrX 2429458 2429467 chrX 2429545 2429554 9 87 9.5 0.0 4.8 1.6 96 chrX 2429458 intergenic gt - chrX 2429506 intergenic not near genes chrX 2429554 intergenic not near genes chrX_9_2425001 chrX_2425001 RAL-208 2203 chrX 2578821 2578846 chrX 2578925 2578950 6 104 1.5 4.0 2.8 1.6 129 chrX 2578821 intergenic Pdfr +,Vha36-3 - chrX 2578886 intergenic Vha36-3 -,Pdfr + chrX 2578950 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-208 2204 chrX 2662163 2662184 chrX 2662262 2662283 6 98 1.5 0.5 1.0 3.0 120 chrX 2662163 intron sgg + chrX 2662223 intron sgg + chrX 2662283 intron sgg + chrX_6_2660001 chrX_2660001 RAL-208 2205 chrX 2803494 2803510 chrX 2803637 2803653 9 143 5.0 1.0 3.0 2.2 159 chrX 2803494 intron kirre + chrX 2803574 intron kirre + chrX 2803653 intron kirre + chrX_9_2800001 chrX_2800001 RAL-208 2206 chrX 2844898 2844931 chrX 2852308 2852341 mdg1 13 7410 3.0 1.0 2.0 4.3 7443 chrX 2844898 intron kirre + chrX 2848620 intron kirre + chrX 2852341 intron kirre + chrX_13_2845001 chrX_2845001 RAL-208 2207 chrX 3058025 3058049 chrX 3058266 3058290 pogo 6 241 2.5 2.0 2.2 1.9 265 chrX 3058025 intron kirre + chrX 3058158 intron kirre + chrX 3058290 intron kirre + chrX_6_3055001 chrX_3055001 RAL-208 2208 chrX 3075645 3075649 chrX 3080952 3080956 Transpac 5 5307 1.5 1.5 1.5 2.0 5311 chrX 3075645 intron kirre + chrX 3078300 intron kirre + chrX 3080956 intron kirre + chrX_5_3075001 chrX_3075001 RAL-208 2209 chrX 3243625 3243653 chrX 3243715 3243743 10 90 3.0 4.5 3.8 2.1 118 chrX 3243625 intron dnc + chrX 3243684 intron dnc + chrX 3243743 intron dnc + chrX_10_3240001 chrX_3240001 RAL-208 2210 chrX 3298551 3298583 chrX 3298634 3298665 23 83 7.0 6.5 6.8 2.9 114 chrX 3298551 intron dnc + chrX 3298608 intron dnc + chrX 3298665 intron dnc + chrX_23_3295001 chrX_3295001 RAL-208 2211 chrX 3306078 3306364 chrX 3306188 3306446 7 94 3.5 5.5 4.5 1.3 368 chrX 3306078 intron dnc + chrX 3306262 intron dnc + chrX 3306446 intron dnc + chrX_7_3305001 chrX_3305001 RAL-208 2212 chrX 3414342 3414373 chrX 3414469 3414500 13 127 1.5 1.5 1.5 5.2 158 chrX 3414342 intron,intron CR44999 +,CG12535 - chrX 3414421 intron,intron CR44999 +,CG12535 - chrX 3414500 intron,intron CR44999 +,CG12535 - chrX_13_3410001 chrX_3410001 RAL-208 2213 chrX 3459987 3460016 chrX 3460072 3460101 10 85 1.5 2.5 2.0 3.3 114 chrX 3459987 intron,intron CR44999 +,CG16782 - chrX 3460044 intron,5` UTR CR44999 +,CG16782 - chrX 3460101 intron,5` UTR CR44999 +,CG16782 - chrX_10_3460001 chrX_3460001 RAL-208 2214 chrX 3597116 3597127 chrX 3597204 3597215 7 88 1.5 3.5 2.5 2.0 99 chrX 3597116 intron AstA-R1 + chrX 3597166 intron AstA-R1 + chrX 3597215 intron AstA-R1 + chrX_7_3595001 chrX_3595001 RAL-208 2215 chrX 3597549 3597581 chrX 3619717 3619749 roo 13 22168 2.0 0.5 1.2 5.9 22200 chrX 3597549 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_13_3605001 chrX_3605001 RAL-208 2216 chrX 3630547 3630574 chrX 3630623 3630650 12 76 3.0 5.5 4.2 2.3 103 chrX 3630547 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630650 intron AstA-R1 + chrX_12_3630001 chrX_3630001 RAL-208 2217 chrX 3703719 3703726 chrX 3703807 3703814 4 88 3.5 4.5 4.0 0.8 95 chrX 3703719 intergenic CR45102 + chrX 3703766 intergenic CR45102 + chrX 3703814 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-208 2218 chrX 3713103 3713136 chrX 3713211 3713245 7 108 0.5 0.0 0.2 5.8 142 chrX 3713103 intron Rala - chrX 3713174 intron Rala - chrX 3713245 intron Rala - chrX_7_3710001 chrX_3710001 RAL-208 2219 chrX 3840260 3840264 chrX 3840341 3840343 4 80 2.5 1.5 2.0 1.3 83 chrX 3840260 intron ec + chrX 3840302 intron ec + chrX 3840343 intron ec + chrX_4_3840001 chrX_3840001 RAL-208 2220 chrX 3881270 3881296 chrX 3881409 3881435 7 139 4.0 2.0 3.0 1.8 165 chrX 3881270 intron VhaAC39-1 + chrX 3881352 intron VhaAC39-1 + chrX 3881435 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-208 2221 chrX 3907470 3907490 chrX 3908199 3908219 11 729 1.0 1.0 1.0 5.5 749 chrX 3907470 intron CG42541 - chrX 3907844 intron CG42541 - chrX 3908219 intron CG42541 - chrX_11_3905001 chrX_3905001 RAL-208 2222 chrX 3915523 3915547 chrX 3915610 3915634 4 87 1.0 9.0 5.0 0.7 111 chrX 3915523 intron CG42541 - chrX 3915578 intron CG42541 - chrX 3915634 intron CG42541 - chrX_4_3915001 chrX_3915001 RAL-208 2223 chrX 3986864 3986896 chrX 3994497 3994529 412 8 7633 3.0 2.5 2.8 2.1 7665 chrX 3986864 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994529 intergenic not near genes chrX_8_3990001 chrX_3990001 RAL-208 2224 chrX 4055659 4055660 chrX 4055738 4055743 4 82 9.0 4.5 6.8 0.5 84 chrX 4055659 intergenic not near genes chrX 4055701 intergenic not near genes chrX 4055743 intergenic not near genes chrX_4_4055001 chrX_4055001 RAL-208 2225 chrX 4101887 4101899 chrX 4101967 4101979 10 80 0.5 5.0 2.8 2.6 92 chrX 4101887 exon CG15375 + chrX 4101933 exon CG15375 + chrX 4101979 exon CG15375 + chrX_10_4100001 chrX_4100001 RAL-208 2226 chrX 4157899 4157904 chrX 4164949 4164957 297 4 7052 7.5 2.5 5.0 0.7 7058 chrX 4157899 intron Fas2 - chrX 4161428 intron Fas2 - chrX 4164957 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-208 2227 chrX 4396981 4397006 chrX 4397065 4397091 13 85 4.0 2.0 3.0 3.2 110 chrX 4396981 intron CR32773 - chrX 4397036 intron CR32773 - chrX 4397091 intron CR32773 - chrX_13_4395001 chrX_4395001 RAL-208 2228 chrX 4700392 4700423 chrX 4700735 4700766 jockey 8 343 1.5 4.5 3.0 2.0 374 chrX 4700392 3` UTR ctp + chrX 4700579 3` UTR ctp + chrX 4700766 3` UTR ctp + chrX_8_4700001 chrX_4700001 RAL-208 2229 chrX 4744165 4744172 chrX 4744263 4744270 4 98 0.5 3.0 1.8 1.4 105 chrX 4744165 intergenic not near genes chrX 4744218 intergenic not near genes chrX 4744270 intergenic not near genes chrX_4_4740001 chrX_4740001 RAL-208 2230 chrX 4763256 4763283 chrX 4763744 4763771 Stalker4 7 488 1.5 4.5 3.0 1.8 515 chrX 4763256 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763771 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-208 2231 chrX 4792392 4792409 chrX 4792823 4792842 jockey 5 432 1.0 2.5 1.8 1.8 450 chrX 4792392 intergenic not near genes chrX 4792617 intergenic not near genes chrX 4792842 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-208 2232 chrX 4827969 4827983 chrX 4835340 4835354 Stalker4 5 7371 3.0 1.0 2.0 1.7 7385 chrX 4827969 intergenic not near genes chrX 4831662 intergenic not near genes chrX 4835354 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-208 2233 chrX 4864156 4864182 chrX 4864234 4864260 6 78 5.0 4.5 4.8 1.0 104 chrX 4864156 intron CG42594 + chrX 4864208 intron CG42594 + chrX 4864260 intron CG42594 + chrX_6_4860001 chrX_4860001 RAL-208 2234 chrX 4871214 4871230 chrX 4871314 4871330 5 100 6.5 5.5 6.0 0.7 116 chrX 4871214 intron CG42594 + chrX 4871272 intron CG42594 + chrX 4871330 intron CG42594 + chrX_5_4870001 chrX_4870001 RAL-208 2235 chrX 4931348 4931377 chrX 4931442 4931471 11 93 24.5 22.5 23.5 0.4 123 chrX 4931348 intron CG44774 - chrX 4931410 intron CG44774 - chrX 4931471 intron CG44774 - chrX_11_4930001 chrX_4930001 RAL-208 2236 chrX 5096290 5096303 chrX 5103855 5103867 springer 7 7565 1.0 5.0 3.0 1.8 7577 chrX 5096290 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103867 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-208 2237 chrX 5129350 5129372 chrX 5129430 5129452 6 80 4.0 4.0 4.0 1.2 102 chrX 5129350 intron,intron CG15465 +,rg + chrX 5129401 intron,intron CG15465 +,rg + chrX 5129452 intron,intron CG15465 +,rg + chrX_6_5125001 chrX_5125001 RAL-208 2238 chrX 5131397 5131408 chrX 5131478 5131488 5 81 6.0 0.5 3.2 1.2 91 chrX 5131397 intron,intron CG15465 +,rg + chrX 5131442 intron,intron CG15465 +,rg + chrX 5131488 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-208 2239 chrX 5134807 5134828 chrX 5134908 5134929 7 101 6.0 4.0 5.0 1.2 122 chrX 5134807 intron,intron CG15465 +,rg + chrX 5134868 intron,intron CG15465 +,rg + chrX 5134929 intron,intron CG15465 +,rg + chrX_7_5130001 chrX_5130001 RAL-208 2240 chrX 5144298 5144320 chrX 5144378 5144400 5 80 2.0 5.0 3.5 1.1 102 chrX 5144298 intron,intron CG15465 +,rg + chrX 5144349 intron,intron CG15465 +,rg + chrX 5144400 intron,intron CG15465 +,rg + chrX_5_5140001 chrX_5140001 RAL-208 2241 chrX 5204446 5204477 chrX 5204648 5204680 9 202 0.5 1.5 1.0 4.5 234 chrX 5204446 intron,intron CG15465 +,rg + chrX 5204563 intron,intron CG15465 +,rg + chrX 5204680 intron,intron CG15465 +,rg + chrX_9_5200001 chrX_5200001 RAL-208 2242 chrX 5220401 5220413 chrX 5220641 5220654 4 241 0.0 0.5 0.2 3.3 253 chrX 5220401 intron,intron CG15465 +,rg + chrX 5220528 intron,intron CG15465 +,rg + chrX 5220654 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-208 2243 chrX 5272836 5272851 chrX 5272923 5272938 6 87 1.5 1.5 1.5 2.4 102 chrX 5272836 intergenic not near genes chrX 5272887 intergenic not near genes chrX 5272938 intergenic not near genes chrX_6_5270001 chrX_5270001 RAL-208 2244 chrX 5345398 5345424 chrX 5345509 5345535 5 111 1.0 2.0 1.5 2.0 137 chrX 5345398 intron SK + chrX 5345466 intron SK + chrX 5345535 intron SK + chrX_5_5345001 chrX_5345001 RAL-208 2245 chrX 5362843 5362853 chrX 5362955 5362965 4 112 0.0 0.0 0.0 4.0 122 chrX 5362843 intron SK + chrX 5362904 intron SK + chrX 5362965 intron SK + chrX_4_5360001 chrX_5360001 RAL-208 2246 chrX 5725030 5725046 chrX 5725133 5725149 8 103 6.0 3.0 4.5 1.5 119 chrX 5725030 intron CG32758 - chrX 5725090 intron CG32758 - chrX 5725149 intron CG32758 - chrX_8_5725001 chrX_5725001 RAL-208 2247 chrX 5800209 5800236 chrX 5800367 5800398 12 161 2.5 5.0 3.8 2.5 189 chrX 5800209 intergenic not near genes chrX 5800304 intergenic not near genes chrX 5800398 intergenic not near genes chrX_12_5800001 chrX_5800001 RAL-208 2248 chrX 5883813 5883838 chrX 5884054 5884077 pogo 7 241 1.5 3.0 2.2 2.2 264 chrX 5883813 intron CR45668 - chrX 5883945 intron CR45668 - chrX 5884077 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-208 2249 chrX 6003289 6003311 chrX 6003369 6003392 8 80 0.0 3.5 1.8 2.9 103 chrX 6003289 intron CR44498 + chrX 6003340 intron CR44498 + chrX 6003392 intron CR44498 + chrX_8_6000001 chrX_6000001 RAL-208 2250 chrX 6053200 6053231 chrX 6053331 6053360 5 130 2.5 0.0 1.2 2.3 160 chrX 6053200 intron CG5921 + chrX 6053280 intron CG5921 + chrX 6053360 intron CG5921 + chrX_5_6050001 chrX_6050001 RAL-208 2251 chrX 6118701 6118725 chrX 6118783 6118807 6 82 3.5 6.0 4.8 1.0 106 chrX 6118701 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118807 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-208 2252 chrX 6171603 6171615 chrX 6179036 6179048 Quasimodo 6 7432 2.0 2.5 2.2 1.9 7445 chrX 6171603 intron Ca-alpha1T - chrX 6175326 intron Ca-alpha1T - chrX 6179048 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-208 2253 chrX 6198791 6198822 chrX 6198881 6198910 6 89 3.0 1.0 2.0 2.0 119 chrX 6198791 intergenic CG32751 -,CG43090 - chrX 6198850 intergenic CG32751 -,CG43090 - chrX 6198910 intergenic CG32751 -,CG43090 - chrX_6_6195001 chrX_6195001 RAL-208 2254 chrX 6215529 6215532 chrX 6215610 6215613 5 81 6.0 5.5 5.8 0.7 84 chrX 6215529 intergenic not near genes chrX 6215571 intergenic not near genes chrX 6215613 intergenic not near genes chrX_5_6215001 chrX_6215001 RAL-208 2255 chrX 6306555 6306581 chrX 6306631 6306658 7 76 4.0 2.0 3.0 1.8 103 chrX 6306555 3` UTR CG3823 + chrX 6306606 3` UTR CG3823 + chrX 6306658 3` UTR CG3823 + chrX_7_6305001 chrX_6305001 RAL-208 2256 chrX 6314191 6314220 chrX 6314283 6314312 9 92 1.0 2.5 1.8 3.2 121 chrX 6314191 intron CG15894 + chrX 6314252 intron CG15894 + chrX 6314312 intron CG15894 + chrX_9_6310001 chrX_6310001 RAL-208 2257 chrX 6335212 6335241 chrX 6337722 6337751 Tirant 7 2510 0.0 2.5 1.2 3.2 2539 chrX 6335212 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-208 2258 chrX 6392867 6392899 chrX 6397632 6397662 Doc 16 4764 2.5 2.5 2.5 4.6 4795 chrX 6392867 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397662 intergenic not near genes chrX_16_6395001 chrX_6395001 RAL-208 2259 chrX 6413542 6413546 chrX 6413976 6413979 4 434 3.5 2.5 3.0 1.0 437 chrX 6413542 intergenic not near genes chrX 6413760 intergenic not near genes chrX 6413979 intergenic not near genes chrX_4_6410001 chrX_6410001 RAL-208 2260 chrX 6562819 6562850 chrX 6571301 6571332 Tirant 11 8482 5.0 5.0 5.0 1.8 8513 chrX 6562819 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571332 intron CG34417 + chrX_11_6565001 chrX_6565001 RAL-208 2261 chrX 6737522 6737549 chrX 6737604 6737631 8 82 3.5 4.5 4.0 1.6 109 chrX 6737522 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737631 intron CG3168 - chrX_8_6735001 chrX_6735001 RAL-208 2262 chrX 6897575 6897577 chrX 6897653 6897653 4 77 0.0 1.0 0.5 2.7 78 chrX 6897575 intergenic not near genes chrX 6897614 intergenic not near genes chrX 6897653 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-208 2263 chrX 6897592 6897711 chrX 6897670 6897821 20 100 1.0 1.0 1.0 10.0 229 chrX 6897592 intergenic not near genes chrX 6897706 intergenic not near genes chrX 6897821 intergenic not near genes chrX_20_6895001 chrX_6895001 RAL-208 2264 chrX 6989504 6989531 chrX 6989591 6989617 7 86 1.0 2.0 1.5 2.8 113 chrX 6989504 intron ogre - chrX 6989560 intron ogre - chrX 6989617 intron ogre - chrX_7_6985001 chrX_6985001 RAL-208 2265 chrX 7023605 7023631 chrX 7030995 7031021 Tabor 9 7390 3.0 2.5 2.8 2.4 7416 chrX 7023605 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031021 intron CG12541 - chrX_9_7025001 chrX_7025001 RAL-208 2266 chrX 7035137 7035148 chrX 7035226 7035234 8 88 4.5 1.0 2.8 2.1 97 chrX 7035137 intron CG12541 - chrX 7035186 intron CG12541 - chrX 7035234 intron CG12541 - chrX_8_7035001 chrX_7035001 RAL-208 2267 chrX 7125252 7125274 chrX 7134409 7134433 roo 8 9158 1.5 3.5 2.5 2.3 9181 chrX 7125252 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134433 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-208 2268 chrX 7270089 7270110 chrX 7270177 7270198 7 88 1.0 2.0 1.5 2.8 109 chrX 7270089 intron CR44357 - chrX 7270144 intron CR44357 - chrX 7270198 intron CR44357 - chrX_7_7270001 chrX_7270001 RAL-208 2269 chrX 7417017 7417041 chrX 7417101 7417125 6 83 2.5 3.0 2.8 1.6 108 chrX 7417017 intergenic CG34337 + chrX 7417071 intergenic CG34337 + chrX 7417125 intergenic CG34337 + chrX_6_7415001 chrX_7415001 RAL-208 2270 chrX 7571532 7571564 chrX 7571608 7571640 5 76 0.5 2.0 1.2 2.3 108 chrX 7571532 intergenic not near genes chrX 7571586 intergenic not near genes chrX 7571640 intergenic not near genes chrX_5_7570001 chrX_7570001 RAL-208 2271 chrX 7702904 7702921 chrX 7703342 7703360 jockey 6 438 4.0 6.5 5.2 1.0 456 chrX 7702904 intron CHES-1-like - chrX 7703132 intron CHES-1-like - chrX 7703360 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-208 2272 chrX 7832436 7832465 chrX 7832525 7832554 7 89 0.5 0.0 0.2 5.8 118 chrX 7832436 intron CG1402 + chrX 7832495 intron CG1402 + chrX 7832554 intron CG1402 + chrX_7_7830001 chrX_7830001 RAL-208 2273 chrX 7836674 7836678 chrX 7836757 7836761 6 83 0.0 0.0 0.0 6.0 87 chrX 7836674 intron CG1402 + chrX 7836718 intron CG1402 + chrX 7836761 intron CG1402 + chrX_6_7835001 chrX_7835001 RAL-208 2274 chrX 8016926 8016956 chrX 8017005 8017035 6 79 2.5 2.0 2.2 1.9 109 chrX 8016926 intron Tbh + chrX 8016980 intron Tbh + chrX 8017035 intron Tbh + chrX_6_8015001 chrX_8015001 RAL-208 2275 chrX 8075140 8075173 chrX 8075248 8075280 9 108 1.5 1.0 1.2 4.1 140 chrX 8075140 exon Upf2 - chrX 8075210 5` UTR Upf2 - chrX 8075280 5` UTR Upf2 - chrX_9_8075001 chrX_8075001 RAL-208 2276 chrX 8085579 8085589 chrX 8085665 8085675 4 86 6.0 2.5 4.2 0.8 96 chrX 8085579 intron,5` UTR CG2256 -,CR45535 + chrX 8085627 intron,5` UTR CG2256 -,CR45535 + chrX 8085675 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-208 2277 chrX 8106039 8106049 chrX 8106121 8106131 6 82 5.0 1.0 3.0 1.5 92 chrX 8106039 intron Gclc - chrX 8106085 intron Gclc - chrX 8106131 intron Gclc - chrX_6_8105001 chrX_8105001 RAL-208 2278 chrX 8163626 8163644 chrX 8163708 8163726 5 82 0.0 1.5 0.8 2.8 100 chrX 8163626 intergenic CR45536 + chrX 8163676 intergenic CR45536 + chrX 8163726 intergenic CR45536 + chrX_5_8160001 chrX_8160001 RAL-208 2279 chrX 8378248 8378266 chrX 8378331 8378347 7 82 2.5 3.0 2.8 1.8 99 chrX 8378248 intergenic not near genes chrX 8378298 intergenic not near genes chrX 8378347 intergenic not near genes chrX_7_8375001 chrX_8375001 RAL-208 2280 chrX 8536763 8536774 chrX 8536839 8536850 11 76 3.0 1.0 2.0 3.7 87 chrX 8536763 intron Nrg + chrX 8536806 intron Nrg + chrX 8536850 intron Nrg + chrX_11_8535001 chrX_8535001 RAL-208 2281 chrX 8628396 8628398 chrX 8628483 8628485 5 87 4.5 5.5 5.0 0.8 89 chrX 8628396 intergenic not near genes chrX 8628440 intergenic not near genes chrX 8628485 intergenic not near genes chrX_5_8625001 chrX_8625001 RAL-208 2282 chrX 8842572 8842601 chrX 8842674 8842703 4 102 1.5 3.0 2.2 1.2 131 chrX 8842572 intron CG12075 + chrX 8842638 intron CG12075 + chrX 8842703 intron CG12075 + chrX_4_8840001 chrX_8840001 RAL-208 2283 chrX 8877788 8877812 chrX 8877912 8877936 9 124 2.0 0.0 1.0 4.5 148 chrX 8877788 intron Moe - chrX 8877862 intron Moe - chrX 8877936 intron Moe - chrX_9_8875001 chrX_8875001 RAL-208 2284 chrX 8885682 8885699 chrX 8885782 8885799 7 100 1.0 7.0 4.0 1.4 117 chrX 8885682 intron Moe - chrX 8885740 intron Moe - chrX 8885799 intron Moe - chrX_7_8885001 chrX_8885001 RAL-208 2285 chrX 8910501 8910502 chrX 10459023 10459031 5 1548527 7.0 3.5 5.2 0.8 1548530 chrX 8910501 intron rdgA + chrX 9684766 intron nej - chrX 10459031 exon Or9a - chrX_5_9680001 chrX_9680001 RAL-208 2286 chrX 8922324 8922356 chrX 8922757 8922790 jockey 11 433 3.0 4.0 3.5 2.4 466 chrX 8922324 intron rdgA + chrX 8922557 intron rdgA + chrX 8922790 intron rdgA + chrX_11_8920001 chrX_8920001 RAL-208 2287 chrX 8927601 8927613 chrX 8929870 8929883 NOF 7 2269 3.0 6.5 4.8 1.2 2282 chrX 8927601 intron rdgA + chrX 8928742 intron rdgA + chrX 8929883 intron rdgA + chrX_7_8925001 chrX_8925001 RAL-208 2288 chrX 8948758 8948791 chrX 8956268 8956301 roo 13 7510 1.5 2.5 2.0 4.3 7543 chrX 8948758 intron rdgA + chrX 8952530 intron rdgA + chrX 8956301 intron rdgA + chrX_13_8950001 chrX_8950001 RAL-208 2289 chrX 9003223 9003234 chrX 9003304 9003315 4 81 1.5 5.0 3.2 1.0 92 chrX 9003223 intron,intron rdgA +,CR43836 - chrX 9003269 intron,intron rdgA +,CR43836 - chrX 9003315 intron,intron rdgA +,CR43836 - chrX_4_9000001 chrX_9000001 RAL-208 2290 chrX 9062721 9062754 chrX 9062799 9062832 5 78 0.5 0.5 0.5 3.3 111 chrX 9062721 intron CG15365 - chrX 9062776 intron CG15365 - chrX 9062832 intron CG15365 - chrX_5_9060001 chrX_9060001 RAL-208 2291 chrX 9076801 9076834 chrX 9076890 9076922 17 89 2.5 1.0 1.8 6.1 121 chrX 9076801 intron CG44325 - chrX 9076862 intron CG44325 - chrX 9076922 intron CG44325 - chrX_17_9075001 chrX_9075001 RAL-208 2292 chrX 9247999 9248033 chrX 9248076 9248110 7 77 3.5 1.5 2.5 2.0 111 chrX 9247999 intron Dsor1 + chrX 9248054 intron Dsor1 + chrX 9248110 intron Dsor1 + chrX_7_9245001 chrX_9245001 RAL-208 2293 chrX 9281675 9281711 chrX 9281751 9281787 18 76 1.0 1.0 1.0 9.0 112 chrX 9281675 intron c11.1 - chrX 9281731 intron c11.1 - chrX 9281787 intron c11.1 - chrX_18_9280001 chrX_9280001 RAL-208 2294 chrX 9337961 9337972 chrX 9338053 9338061 4 91 2.0 4.0 3.0 1.0 100 chrX 9337961 intron CG34449 - chrX 9338011 intron CG34449 - chrX 9338061 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-208 2295 chrX 9508137 9508162 chrX 9509654 9509680 jockey 8 1518 5.5 5.0 5.2 1.3 1543 chrX 9508137 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509680 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-208 2296 chrX 9575791 9575821 chrX 9576115 9576145 mdg3 13 323 2.0 2.5 2.2 4.1 354 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_13_9575001 chrX_9575001 RAL-208 2297 chrX 9599181 9599200 chrX 9599259 9599278 7 77 5.0 1.5 3.2 1.7 97 chrX 9599181 intergenic not near genes chrX 9599230 intergenic not near genes chrX 9599278 intergenic not near genes chrX_7_9595001 chrX_9595001 RAL-208 2298 chrX 9839367 9839380 chrX 9839449 9839462 5 82 0.0 7.0 3.5 1.1 95 chrX 9839367 intron CG32698 + chrX 9839414 intron CG32698 + chrX 9839462 intron CG32698 + chrX_5_9835001 chrX_9835001 RAL-208 2299 chrX 10138223 10138237 chrX 10145727 10145741 412 12 7504 3.0 3.0 3.0 3.0 7518 chrX 10138223 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145741 intron,intron RhoU +,CR44894 - chrX_12_10140001 chrX_10140001 RAL-208 2300 chrX 10154286 10154309 chrX 10154362 10154385 5 75 0.5 1.0 0.8 2.8 99 chrX 10154286 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154385 intron,exon CR44894 -,CG12645 + chrX_5_10150001 chrX_10150001 RAL-208 2301 chrX 10167865 10167888 chrX 10168611 10168634 6 745 3.0 1.0 2.0 2.0 769 chrX 10167865 intron,intron CR44894 -,CG43902 + chrX 10168250 intron,intron CR44894 -,CG43902 + chrX 10168634 intron,intron CR44894 -,CG43902 + chrX_6_10165001 chrX_10165001 RAL-208 2302 chrX 10267302 10267336 chrX 10276452 10276485 roo 6 9150 4.5 0.0 2.2 1.9 9183 chrX 10267302 3` UTR alpha-Man-I - chrX 10271894 intron alpha-Man-I - chrX 10276485 3` UTR alpha-Man-I - chrX_6_10270001 chrX_10270001 RAL-208 2303 chrX 6508584 6508585 chrX 10301654 10301654 4 3793069 14.5 6.0 10.2 0.4 3793070 chrX 6508584 intron CG42340 - chrX 8405119 exon CG11190 - chrX 10301654 intron alpha-Man-I - chrX_4_8405001 chrX_8405001 RAL-208 2304 chrX 10317555 10317581 chrX 10317633 10317659 8 78 0.0 0.5 0.2 6.7 104 chrX 10317555 intron alpha-Man-I - chrX 10317607 intron alpha-Man-I - chrX 10317659 intron alpha-Man-I - chrX_8_10315001 chrX_10315001 RAL-208 2305 chrX 10338926 10338943 chrX 10339014 10339031 4 87 5.0 0.0 2.5 1.1 105 chrX 10338926 intron CG43740 + chrX 10338978 intron CG43740 + chrX 10339031 intron CG43740 + chrX_4_10335001 chrX_10335001 RAL-208 2306 chrX 10367191 10367198 chrX 10367300 10367307 6 109 3.0 1.5 2.2 1.9 116 chrX 10367191 exon CG32679 - chrX 10367249 intron CG32679 - chrX 10367307 intron CG32679 - chrX_6_10365001 chrX_10365001 RAL-208 2307 chrX 10488468 10488479 chrX 10488552 10488563 4 84 2.5 4.0 3.2 1.0 95 chrX 10488468 intergenic not near genes chrX 10488516 intergenic not near genes chrX 10488563 intergenic not near genes chrX_4_10485001 chrX_10485001 RAL-208 2308 chrX 10506500 10506517 chrX 10506587 10506602 7 87 3.0 1.5 2.2 2.2 102 chrX 10506500 intron spri - chrX 10506551 intron spri - chrX 10506602 intron spri - chrX_7_10505001 chrX_10505001 RAL-208 2309 chrX 10550856 10550882 chrX 10552323 10552347 hobo 8 1467 1.0 1.5 1.2 3.6 1491 chrX 10550856 intron spri - chrX 10551602 intron spri - chrX 10552347 intron spri - chrX_8_10550001 chrX_10550001 RAL-208 2310 chrX 10686049 10686079 chrX 10691186 10691216 roo 5 5137 3.0 4.5 3.8 1.0 5167 chrX 10686049 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691216 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-208 2311 chrX 10772676 10772696 chrX 10772759 10772779 Tirant 12 83 2.5 2.0 2.2 3.8 103 chrX 10772676 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772779 intron CG15211 + chrX_12_10770001 chrX_10770001 RAL-208 2312 chrX 10811866 10811898 chrX 10811958 10811990 12 92 4.0 0.0 2.0 4.0 124 chrX 10811866 intron Imp - chrX 10811928 intron Imp - chrX 10811990 intron Imp - chrX_12_10810001 chrX_10810001 RAL-208 2313 chrX 11088574 11088606 chrX 11088665 11088697 12 91 2.0 3.0 2.5 3.4 123 chrX 11088574 intergenic not near genes chrX 11088636 intergenic not near genes chrX 11088697 intergenic not near genes chrX_12_11085001 chrX_11085001 RAL-208 2314 chrX 11211837 11211852 chrX 11211944 11211959 6 106 1.0 2.5 1.8 2.1 122 chrX 11211837 intergenic not near genes chrX 11211898 intergenic not near genes chrX 11211959 intergenic not near genes chrX_6_11210001 chrX_11210001 RAL-208 2315 chrX 11268563 11268574 chrX 11270056 11270067 hopper2 6 1493 0.5 6.0 3.2 1.4 1504 chrX 11268563 intron CG44422 - chrX 11269315 intron CG44422 - chrX 11270067 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-208 2316 chrX 11312076 11312090 chrX 11319428 11319443 Stalker2 9 7353 3.0 3.5 3.2 2.1 7367 chrX 11312076 intergenic not near genes chrX 11315760 intergenic not near genes chrX 11319443 intergenic not near genes chrX_9_11315001 chrX_11315001 RAL-208 2317 chrX 11633417 11633442 chrX 11640471 11640496 297 4 7053 1.0 2.0 1.5 1.6 7079 chrX 11633417 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640496 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-208 2318 chrX 11719869 11719903 chrX 11719949 11719983 13 80 2.5 2.0 2.2 4.1 114 chrX 11719869 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11719983 intergenic prtp +,Tango10 + chrX_13_11715001 chrX_11715001 RAL-208 2319 chrX 11762314 11762327 chrX 11762397 11762410 9 83 0.0 2.5 1.2 4.1 96 chrX 11762314 intron m + chrX 11762362 intron m + chrX 11762410 intron m + chrX_9_11760001 chrX_11760001 RAL-208 2320 chrX 11880926 11880957 chrX 11881008 11881039 10 82 1.5 2.5 2.0 3.3 113 chrX 11880926 exon CG10353 - chrX 11880982 intron CG10353 - chrX 11881039 intron CG10353 - chrX_10_11880001 chrX_11880001 RAL-208 2321 chrX 12038090 12038111 chrX 12038284 12038305 8 194 5.0 2.5 3.8 1.7 215 chrX 12038090 intergenic not near genes chrX 12038198 intergenic not near genes chrX 12038305 intergenic not near genes chrX_8_12035001 chrX_12035001 RAL-208 2322 chrX 12069072 12069089 chrX 12069159 12069176 4 87 1.0 2.5 1.8 1.4 104 chrX 12069072 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069124 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069176 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_4_12065001 chrX_12065001 RAL-208 2323 chrX 12094039 12094066 chrX 12094129 12094158 9 92 4.0 4.5 4.2 1.7 119 chrX 12094039 intron,intron CR43960 +,Ten-a + chrX 12094098 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_9_12090001 chrX_12090001 RAL-208 2324 chrX 12168135 12168166 chrX 12173577 12173608 I-element 7 5442 1.5 4.0 2.8 1.8 5473 chrX 12168135 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173608 intron Ten-a + chrX_7_12170001 chrX_12170001 RAL-208 2325 chrX 12176746 12176769 chrX 12176822 12176845 7 76 1.5 5.0 3.2 1.7 99 chrX 12176746 intron,3` UTR Ten-a +,CG1924 - chrX 12176796 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-208 2326 chrX 12240660 12240697 chrX 12240757 12240795 10 98 2.5 3.0 2.8 2.6 135 chrX 12240660 intron Ten-a + chrX 12240728 intron Ten-a + chrX 12240795 intron Ten-a + chrX_10_12240001 chrX_12240001 RAL-208 2327 chrX 12301955 12301985 chrX 12303260 12303291 X-element 7 1305 2.0 3.5 2.8 1.8 1336 chrX 12301955 intron Ten-a + chrX 12302623 intron Ten-a + chrX 12303291 intron Ten-a + chrX_7_12300001 chrX_12300001 RAL-208 2328 chrX 12350780 12350800 chrX 12350861 12350881 6 80 6.0 0.0 3.0 1.5 101 chrX 12350780 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350881 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-208 2329 chrX 12381894 12381902 chrX 12385796 12385802 flea 5 3901 1.0 3.0 2.0 1.7 3908 chrX 12381894 intergenic not near genes chrX 12383848 intergenic not near genes chrX 12385802 intergenic not near genes chrX_5_12380001 chrX_12380001 RAL-208 2330 chrX 12442096 12442115 chrX 12442178 12442197 10 82 2.5 0.0 1.2 4.5 101 chrX 12442096 intron Pkcdelta + chrX 12442146 intron Pkcdelta + chrX 12442197 intron Pkcdelta + chrX_10_12440001 chrX_12440001 RAL-208 2331 chrX 12577612 12577627 chrX 12577723 12577738 15 111 5.0 5.5 5.2 2.4 126 chrX 12577612 intron CG11138 - chrX 12577675 intron CG11138 - chrX 12577738 intron CG11138 - chrX_15_12575001 chrX_12575001 RAL-208 2332 chrX 12670330 12670363 chrX 12670412 12670445 12 83 2.5 2.5 2.5 3.4 115 chrX 12670330 intron Tis11 + chrX 12670388 intron Tis11 + chrX 12670445 intron Tis11 + chrX_12_12670001 chrX_12670001 RAL-208 2333 chrX 12752282 12752309 chrX 12752367 12752396 7 87 1.0 2.5 1.8 2.5 114 chrX 12752282 5` UTR CR44619 + chrX 12752339 5` UTR CR44619 + chrX 12752396 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 RAL-208 2334 chrX 12971696 12971720 chrX 12971772 12971797 5 76 1.5 3.0 2.2 1.6 101 chrX 12971696 intron,exon CR43636 -,CG15721 + chrX 12971746 intron,exon CR43636 -,CG15721 + chrX 12971797 intron,exon CR43636 -,CG15721 + chrX_5_12970001 chrX_12970001 RAL-208 2335 chrX 13146595 13146627 chrX 13146683 13146715 6 88 0.5 0.5 0.5 4.0 120 chrX 13146595 intron CG32645 + chrX 13146655 intron CG32645 + chrX 13146715 intron CG32645 + chrX_6_13145001 chrX_13145001 RAL-208 2336 chrX 13236882 13236894 chrX 13236966 13236979 7 85 0.0 1.0 0.5 4.7 97 chrX 13236882 intron mew - chrX 13236930 intron mew - chrX 13236979 intron mew - chrX_7_13235001 chrX_13235001 RAL-208 2337 chrX 13269202 13269223 chrX 13269277 13269299 6 76 0.0 0.0 0.0 6.0 97 chrX 13269202 intron HDAC4 - chrX 13269250 intron HDAC4 - chrX 13269299 intron HDAC4 - chrX_6_13265001 chrX_13265001 RAL-208 2338 chrX 13374837 13374870 chrX 13374917 13374950 19 80 6.0 1.5 3.8 4.0 113 chrX 13374837 intron CG1640 + chrX 13374894 intron CG1640 + chrX 13374950 intron CG1640 + chrX_19_13370001 chrX_13370001 RAL-208 2339 chrX 13429461 13429494 chrX 13430610 13430643 jockey 15 1148 1.5 7.0 4.2 2.9 1182 chrX 13429461 intergenic not near genes chrX 13430052 intergenic not near genes chrX 13430643 intergenic not near genes chrX_15_13430001 chrX_13430001 RAL-208 2340 chrX 13437545 13437579 chrX 13437624 13437658 7 78 1.0 2.0 1.5 2.8 113 chrX 13437545 intergenic not near genes chrX 13437602 intergenic not near genes chrX 13437658 intergenic not near genes chrX_7_13435001 chrX_13435001 RAL-208 2341 chrX 13507309 13507324 chrX 13507390 13507405 7 81 5.0 0.5 2.8 1.8 96 chrX 13507309 intron Neto + chrX 13507357 intron Neto + chrX 13507405 intron Neto + chrX_7_13505001 chrX_13505001 RAL-208 2342 chrX 13795006 13795031 chrX 13795097 13795122 8 90 4.5 4.5 4.5 1.5 116 chrX 13795006 intron inaE + chrX 13795064 intron inaE + chrX 13795122 intron inaE + chrX_8_13795001 chrX_13795001 RAL-208 2343 chrX 13821473 13821475 chrX 13821548 13821551 5 76 10.0 3.0 6.5 0.7 78 chrX 13821473 intron Clic - chrX 13821512 intron Clic - chrX 13821551 intron Clic - chrX_5_13820001 chrX_13820001 RAL-208 2344 chrX 13843391 13843405 chrX 13843543 13843558 5 152 3.0 0.5 1.8 1.8 167 chrX 13843391 intron AMPdeam - chrX 13843474 intron AMPdeam - chrX 13843558 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-208 2345 chrX 13875969 13875989 chrX 13876053 13876073 8 83 0.0 0.0 0.0 8.0 104 chrX 13875969 intron mamo - chrX 13876021 intron mamo - chrX 13876073 intron mamo - chrX_8_13875001 chrX_13875001 RAL-208 2346 chrX 13935520 13935523 chrX 13935603 13935605 5 83 8.5 4.5 6.5 0.7 85 chrX 13935520 intron mamo - chrX 13935562 intron mamo - chrX 13935605 intron mamo - chrX_5_13935001 chrX_13935001 RAL-208 2347 chrX 14008982 14008997 chrX 14009071 14009086 5 89 3.5 1.0 2.2 1.6 104 chrX 14008982 intergenic not near genes chrX 14009034 intergenic not near genes chrX 14009086 intergenic not near genes chrX_5_14005001 chrX_14005001 RAL-208 2348 chrX 14105021 14105048 chrX 14114172 14114199 roo 8 9151 2.0 0.5 1.2 3.6 9178 chrX 14105021 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114199 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-208 2349 chrX 14157597 14157620 chrX 14163254 14163276 297 5 5657 2.0 2.0 2.0 1.7 5679 chrX 14157597 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163276 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-208 2350 chrX 14447676 14447694 chrX 14447756 14447774 7 80 0.0 1.0 0.5 4.7 98 chrX 14447676 intron dpr8 + chrX 14447725 intron dpr8 + chrX 14447774 intron dpr8 + chrX_7_14445001 chrX_14445001 RAL-208 2351 chrX 14487822 14487846 chrX 14487917 14487941 9 94 1.0 3.0 2.0 3.0 119 chrX 14487822 intergenic not near genes chrX 14487882 intergenic not near genes chrX 14487941 intergenic not near genes chrX_9_14485001 chrX_14485001 RAL-208 2352 chrX 14531363 14531385 chrX 14531452 14531474 9 89 3.0 2.5 2.8 2.4 111 chrX 14531363 intergenic not near genes chrX 14531418 intergenic not near genes chrX 14531474 intergenic not near genes chrX_9_14530001 chrX_14530001 RAL-208 2353 chrX 14589690 14589702 chrX 14589927 14589939 pogo 6 236 3.0 2.5 2.8 1.6 249 chrX 14589690 intron CG9413 - chrX 14589814 intron CG9413 - chrX 14589939 intron CG9413 - chrX_6_14585001 chrX_14585001 RAL-208 2354 chrX 14636460 14636494 chrX 14641901 14641935 I-element 12 5441 5.0 2.0 3.5 2.7 5475 chrX 14636460 intron NetA - chrX 14639198 intron NetA - chrX 14641935 intron NetA - chrX_12_14635001 chrX_14635001 RAL-208 2355 chrX 14645542 14645565 chrX 14645624 14645649 6 84 2.0 1.0 1.5 2.4 107 chrX 14645542 intron NetA - chrX 14645596 intron NetA - chrX 14645649 intron NetA - chrX_6_14645001 chrX_14645001 RAL-208 2356 chrX 14714046 14714065 chrX 14714128 14714147 8 81 0.5 1.5 1.0 4.0 101 chrX 14714046 intron NetB - chrX 14714096 intron NetB - chrX 14714147 intron NetB - chrX_8_14710001 chrX_14710001 RAL-208 2357 chrX 14778026 14778059 chrX 14782823 14782856 Doc 12 4797 4.0 4.5 4.2 2.3 4830 chrX 14778026 intergenic CG5347 + chrX 14780441 intergenic not near genes chrX 14782856 intergenic Ag5r2 - chrX_12_14780001 chrX_14780001 RAL-208 2358 chrX 14818765 14818798 chrX 14823967 14824002 copia 12 5204 0.5 3.0 1.8 4.3 5237 chrX 14818765 intron rut - chrX 14821384 intron rut - chrX 14824002 intron rut - chrX_12_14820001 chrX_14820001 RAL-208 2359 chrX 14900081 14900088 chrX 14900168 14900175 5 87 2.0 0.0 1.0 2.5 94 chrX 14900081 intron Flo2 + chrX 14900128 intron Flo2 + chrX 14900175 intron Flo2 + chrX_5_14900001 chrX_14900001 RAL-208 2360 chrX 14928225 14928243 chrX 14928310 14928329 10 86 1.5 5.5 3.5 2.2 104 chrX 14928225 intron,exon Flo2 +,CG32591 - chrX 14928277 intron,exon Flo2 +,CG32591 - chrX 14928329 intron,exon Flo2 +,CG32591 - chrX_10_14925001 chrX_14925001 RAL-208 2361 chrX 14936865 14936893 chrX 14946122 14946150 roo 12 9257 3.5 3.0 3.2 2.9 9285 chrX 14936865 intron pdgy - chrX 14941508 intron pdgy - chrX 14946150 intron pdgy - chrX_12_14940001 chrX_14940001 RAL-208 2362 chrX 14968085 14968098 chrX 14968164 14968177 4 79 0.5 7.5 4.0 0.8 92 chrX 14968085 intron eag + chrX 14968131 intron eag + chrX 14968177 intron eag + chrX_4_14965001 chrX_14965001 RAL-208 2363 chrX 15110618 15110650 chrX 15110698 15110730 10 80 5.5 2.5 4.0 2.0 112 chrX 15110618 exon Rab3-GEF + chrX 15110674 intron Rab3-GEF + chrX 15110730 intron Rab3-GEF + chrX_10_15110001 chrX_15110001 RAL-208 2364 chrX 15204480 15204502 chrX 15205044 15205066 14 563 0.0 2.5 1.2 6.4 586 chrX 15204480 intergenic not near genes chrX 15204773 intergenic not near genes chrX 15205066 intergenic not near genes chrX_14_15200001 chrX_15200001 RAL-208 2365 chrX 15211626 15211631 chrX 15211717 15211723 4 92 5.5 0.0 2.8 1.1 97 chrX 15211626 intergenic CG5662 + chrX 15211674 intergenic CG5662 + chrX 15211723 intergenic CG5662 + chrX_4_15210001 chrX_15210001 RAL-208 2366 chrX 15273711 15273732 chrX 15274878 15274899 1360 4 1167 1.5 3.0 2.2 1.2 1188 chrX 15273711 intergenic not near genes chrX 15274305 intergenic not near genes chrX 15274899 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-208 2367 chrX 15413050 15413073 chrX 15417352 15417375 Juan 11 4302 4.5 3.5 4.0 2.2 4325 chrX 15413050 intron Cngl - chrX 15415212 intron Cngl - chrX 15417375 intron Cngl - chrX_11_15415001 chrX_15415001 RAL-208 2368 chrX 15426191 15426198 chrX 15426287 15426294 4 96 1.5 3.5 2.5 1.1 103 chrX 15426191 intron Cngl - chrX 15426242 intron Cngl - chrX 15426294 intron Cngl - chrX_4_15425001 chrX_15425001 RAL-208 2369 chrX 15565648 15565667 chrX 15565733 15565753 5 86 2.5 3.0 2.8 1.3 105 chrX 15565648 intergenic not near genes chrX 15565700 intergenic not near genes chrX 15565753 intergenic not near genes chrX_5_15565001 chrX_15565001 RAL-208 2370 chrX 15681397 15681427 chrX 15681479 15681509 7 82 2.5 1.5 2.0 2.3 112 chrX 15681397 intergenic not near genes chrX 15681453 intergenic not near genes chrX 15681509 intergenic not near genes chrX_7_15680001 chrX_15680001 RAL-208 2371 chrX 16074143 16074160 chrX 16074479 16074496 5 336 1.0 4.0 2.5 1.4 353 chrX 16074143 intergenic not near genes chrX 16074320 intergenic Tob - chrX 16074496 intergenic Tob - chrX_5_16070001 chrX_16070001 RAL-208 2372 chrX 16100556 16100560 chrX 16100635 16100639 4 79 5.5 1.5 3.5 0.9 83 chrX 16100556 intron,intron CG42353 -,CG42354 - chrX 16100598 intron,intron CG42353 -,CG42354 - chrX 16100639 intron,intron CG42353 -,CG42354 - chrX_4_16100001 chrX_16100001 RAL-208 2373 chrX 16105517 16105533 chrX 16105601 16105620 9 86 2.0 2.0 2.0 3.0 103 chrX 16105517 intergenic not near genes chrX 16105568 intergenic not near genes chrX 16105620 intergenic not near genes chrX_9_16105001 chrX_16105001 RAL-208 2374 chrX 16156700 16156734 chrX 16156806 16156840 6 106 2.0 3.5 2.8 1.6 140 chrX 16156700 intergenic not near genes chrX 16156770 intergenic not near genes chrX 16156840 intergenic not near genes chrX_6_16155001 chrX_16155001 RAL-208 2375 chrX 16222788 16222806 chrX 16231138 16231156 roo 7 8350 1.5 6.5 4.0 1.4 8368 chrX 16222788 intergenic not near genes chrX 16226972 intergenic not near genes chrX 16231156 intergenic not near genes chrX_7_16225001 chrX_16225001 RAL-208 2376 chrX 16295526 16295552 chrX 16295610 16295636 10 84 2.0 0.0 1.0 5.0 110 chrX 16295526 intron CG9911 - chrX 16295581 intron CG9911 - chrX 16295636 intron CG9911 - chrX_10_16295001 chrX_16295001 RAL-208 2377 chrX 16329436 16329448 chrX 16329519 16329528 4 82 0.0 2.5 1.2 1.8 92 chrX 16329436 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329528 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-208 2378 chrX 16404365 16404369 chrX 16404461 16404464 5 95 2.5 6.0 4.2 1.0 99 chrX 16404365 intron CG9981 - chrX 16404414 intron CG9981 - chrX 16404464 intron CG9981 - chrX_5_16400001 chrX_16400001 RAL-208 2379 chrX 16437605 16437630 chrX 16437692 16437717 8 87 3.0 1.0 2.0 2.7 112 chrX 16437605 3` UTR,3` UTR hang +,CG9947 - chrX 16437661 3` UTR,3` UTR hang +,CG9947 - chrX 16437717 3` UTR,3` UTR hang +,CG9947 - chrX_8_16435001 chrX_16435001 RAL-208 2380 chrX 16492651 16492676 chrX 16498228 16498253 mdg3 7 5577 1.5 4.5 3.0 1.8 5602 chrX 16492651 intron para - chrX 16495452 intron para - chrX 16498253 intron para - chrX_7_16495001 chrX_16495001 RAL-208 2381 chrX 16681631 16681660 chrX 16681707 16681736 7 76 5.5 3.5 4.5 1.3 105 chrX 16681631 3` UTR,intron sing +,Axs - chrX 16681684 3` UTR,intron sing +,Axs - chrX 16681736 3` UTR,intron sing +,Axs - chrX_7_16680001 chrX_16680001 RAL-208 2382 chrX 16821086 16821107 chrX 16821165 16821186 9 79 1.5 5.0 3.2 2.1 100 chrX 16821086 intron CG4829 + chrX 16821136 intron CG4829 + chrX 16821186 intron CG4829 + chrX_9_16820001 chrX_16820001 RAL-208 2383 chrX 16850059 16850075 chrX 16850138 16850155 4 80 0.0 4.5 2.2 1.2 96 chrX 16850059 intron CG13003 - chrX 16850107 intron CG13003 - chrX 16850155 intron CG13003 - chrX_4_16850001 chrX_16850001 RAL-208 2384 chrX 16874043 16874053 chrX 16874119 16874129 6 76 3.0 2.0 2.5 1.7 86 chrX 16874043 intron CG13003 - chrX 16874086 intron CG13003 - chrX 16874129 intron CG13003 - chrX_6_16870001 chrX_16870001 RAL-208 2385 chrX 16936018 16936032 chrX 16936436 16936450 jockey 6 418 3.5 3.5 3.5 1.3 432 chrX 16936018 intron CG4928 + chrX 16936234 intron CG4928 + chrX 16936450 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-208 2386 chrX 17026422 17026444 chrX 17026713 17026730 7 290 2.0 1.0 1.5 2.8 308 chrX 17026422 intron CG45002 - chrX 17026576 intron CG45002 - chrX 17026730 intron CG45002 - chrX_7_17025001 chrX_17025001 RAL-208 2387 chrX 17061569 17061598 chrX 17061692 17061721 8 123 4.0 3.0 3.5 1.8 152 chrX 17061569 intron CG45002 - chrX 17061645 intron CG45002 - chrX 17061721 intron CG45002 - chrX_8_17060001 chrX_17060001 RAL-208 2388 chrX 17088192 17088201 chrX 17088783 17088794 4 592 0.0 2.5 1.2 1.8 602 chrX 17088192 intergenic not near genes chrX 17088493 intergenic not near genes chrX 17088794 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-208 2389 chrX 17122639 17122669 chrX 17122730 17122760 9 91 0.0 2.0 1.0 4.5 121 chrX 17122639 intron CG5004 + chrX 17122700 intron CG5004 + chrX 17122760 intron CG5004 + chrX_9_17120001 chrX_17120001 RAL-208 2390 chrX 17195209 17195231 chrX 17200295 17200317 flea 5 5086 1.0 3.0 2.0 1.7 5108 chrX 17195209 3` UTR baz + chrX 17197763 3` UTR baz + chrX 17200317 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-208 2391 chrX 17282877 17282905 chrX 17282955 17282983 10 77 4.0 0.0 2.0 3.3 106 chrX 17282877 intron CG5445 + chrX 17282930 5` UTR CG5445 + chrX 17282983 intron CG5445 + chrX_10_17280001 chrX_17280001 RAL-208 2392 chrX 17290068 17290095 chrX 17290144 17290171 9 76 1.5 2.0 1.8 3.2 103 chrX 17290068 intron,intron CG5445 +,Fim - chrX 17290120 intron,intron CG5445 +,Fim - chrX 17290171 intron,intron CG5445 +,Fim - chrX_9_17290001 chrX_17290001 RAL-208 2393 chrX 17352590 17352616 chrX 17352693 17352719 16 103 0.0 6.5 3.2 3.8 129 chrX 17352590 intergenic not near genes chrX 17352654 intergenic not near genes chrX 17352719 intergenic not near genes chrX_16_17350001 chrX_17350001 RAL-208 2394 chrX 17362491 17362499 chrX 17362583 17362590 5 92 0.5 0.5 0.5 3.3 99 chrX 17362491 intergenic not near genes chrX 17362540 intergenic not near genes chrX 17362590 intergenic not near genes chrX_5_17360001 chrX_17360001 RAL-208 2395 chrX 17373284 17373292 chrX 17373367 17373375 9 82 5.5 6.0 5.8 1.3 91 chrX 17373284 intergenic not near genes chrX 17373330 intergenic not near genes chrX 17373375 intergenic not near genes chrX_9_17370001 chrX_17370001 RAL-208 2396 chrX 17493250 17493281 chrX 17493330 17493361 7 80 2.5 1.5 2.0 2.3 111 chrX 17493250 intron CG43658 - chrX 17493306 intron CG43658 - chrX 17493361 intron CG43658 - chrX_7_17490001 chrX_17490001 RAL-208 2397 chrX 17568961 17568986 chrX 17571045 17571070 9 2084 21.5 13.0 17.2 0.5 2109 chrX 17568961 exon ppk23 - chrX 17570016 intergenic not near genes chrX 17571070 intergenic not near genes chrX_9_17570001 chrX_17570001 RAL-208 2398 chrX 17741359 17741371 chrX 17741505 17741517 5 146 0.0 6.0 3.0 1.2 158 chrX 17741359 intron CG42684 + chrX 17741438 intron CG42684 + chrX 17741517 intron CG42684 + chrX_5_17740001 chrX_17740001 RAL-208 2399 chrX 17879653 17879679 chrX 17879759 17879783 5 105 3.5 4.5 4.0 1.0 130 chrX 17879653 intron mnb - chrX 17879718 intron mnb - chrX 17879783 intron mnb - chrX_5_17875001 chrX_17875001 RAL-208 2400 chrX 17968892 17968930 chrX 17969010 17969048 10 118 3.0 2.0 2.5 2.9 156 chrX 17968892 intron Sh - chrX 17968970 intron Sh - chrX 17969048 intron Sh - chrX_10_17965001 chrX_17965001 RAL-208 2401 chrX 18020820 18020841 chrX 18020907 18020928 6 87 1.0 0.5 0.8 3.3 108 chrX 18020820 intron Sh - chrX 18020874 intron Sh - chrX 18020928 intron Sh - chrX_6_18020001 chrX_18020001 RAL-208 2402 chrX 18122824 18122844 chrX 18122900 18122920 5 76 4.5 2.5 3.5 1.1 96 chrX 18122824 5` UTR CR45606 + chrX 18122872 5` UTR CR45606 + chrX 18122920 intergenic CR45606 + chrX_5_18120001 chrX_18120001 RAL-208 2403 chrX 18320493 18320501 chrX 18320625 18320633 4 132 0.0 3.5 1.8 1.4 140 chrX 18320493 intron CG6023 - chrX 18320563 intron CG6023 - chrX 18320633 intron CG6023 - chrX_4_18320001 chrX_18320001 RAL-208 2404 chrX 18362937 18362946 chrX 18363014 18363023 4 77 0.0 2.5 1.2 1.8 86 chrX 18362937 intergenic CG6106 + chrX 18362980 intergenic CG6106 + chrX 18363023 intergenic CG6106 + chrX_4_18360001 chrX_18360001 RAL-208 2405 chrX 18429499 18429516 chrX 18434809 18434827 Transpac 11 5311 4.0 6.5 5.2 1.8 5328 chrX 18429499 intergenic not near genes chrX 18432163 intergenic not near genes chrX 18434827 intergenic not near genes chrX_11_18430001 chrX_18430001 RAL-208 2406 chrX 18453589 18453612 chrX 18453665 18453688 6 75 4.0 3.0 3.5 1.3 99 chrX 18453589 intron CG32547 - chrX 18453638 intron CG32547 - chrX 18453688 intron CG32547 - chrX_6_18450001 chrX_18450001 RAL-208 2407 chrX 18467227 18467257 chrX 18467391 18467421 5 164 1.5 2.5 2.0 1.7 194 chrX 18467227 intron CG32547 - chrX 18467324 intron CG32547 - chrX 18467421 intron CG32547 - chrX_5_18465001 chrX_18465001 RAL-208 2408 chrX 18474058 18474065 chrX 18474143 18474150 6 86 6.0 1.0 3.5 1.3 92 chrX 18474058 intron CG32547 - chrX 18474104 intron CG32547 - chrX 18474150 intron CG32547 - chrX_6_18470001 chrX_18470001 RAL-208 2409 chrX 18558791 18558797 chrX 18558873 18558875 4 80 1.5 6.5 4.0 0.8 84 chrX 18558791 intron Bx + chrX 18558833 intron Bx + chrX 18558875 intron Bx + chrX_4_18555001 chrX_18555001 RAL-208 2410 chrX 18645013 18645049 chrX 18645111 18645147 10 98 0.5 2.0 1.2 4.5 134 chrX 18645013 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645147 intron Rip11 - chrX_10_18645001 chrX_18645001 RAL-208 2411 chrX 18698851 18698877 chrX 18698968 18698994 4 117 1.0 2.5 1.8 1.4 143 chrX 18698851 intergenic not near genes chrX 18698922 intergenic not near genes chrX 18698994 intergenic not near genes chrX_4_18695001 chrX_18695001 RAL-208 2412 chrX 18832261 18832297 chrX 18832353 18832389 6 92 0.5 2.0 1.2 2.7 128 chrX 18832261 intergenic CG7101 +,Pvf1 + chrX 18832325 intergenic CG7101 +,Pvf1 + chrX 18832389 intergenic CG7101 +,Pvf1 + chrX_6_18830001 chrX_18830001 RAL-208 2413 chrX 18896521 18896545 chrX 18896631 18896656 7 111 0.5 2.0 1.2 3.2 135 chrX 18896521 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896656 intergenic CG7349 + chrX_7_18895001 chrX_18895001 RAL-208 2414 chrX 18957080 18957097 chrX 18965741 18965758 roo 4 8661 1.5 1.0 1.2 1.8 8678 chrX 18957080 intron CG43759 + chrX 18961419 intron CG43759 + chrX 18965758 intron CG43759 + chrX_4_18960001 chrX_18960001 RAL-208 2415 chrX 18971612 18971643 chrX 18971689 18971720 6 77 0.0 0.0 0.0 6.0 108 chrX 18971612 intron CG43759 + chrX 18971666 intron CG43759 + chrX 18971720 intron CG43759 + chrX_6_18970001 chrX_18970001 RAL-208 2416 chrX 19060410 19060439 chrX 19065194 19065221 Doc 7 4783 2.5 4.5 3.5 1.6 4811 chrX 19060410 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065221 intron CG14190 + chrX_7_19060001 chrX_19060001 RAL-208 2417 chrX 19080324 19080357 chrX 19080430 19080463 10 106 1.5 3.0 2.2 3.1 139 chrX 19080324 intergenic not near genes chrX 19080394 intergenic not near genes chrX 19080463 intergenic not near genes chrX_10_19080001 chrX_19080001 RAL-208 2418 chrX 19099663 19099683 chrX 19099746 19099766 5 83 5.0 2.0 3.5 1.1 103 chrX 19099663 intergenic not near genes chrX 19099714 intergenic not near genes chrX 19099766 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-208 2419 chrX 19125693 19125719 chrX 19125822 19125848 9 129 3.5 6.0 4.8 1.6 155 chrX 19125693 intron tgy - chrX 19125770 intron tgy - chrX 19125848 intron tgy - chrX_9_19125001 chrX_19125001 RAL-208 2420 chrX 19136561 19136562 chrX 19143476 19143482 412 5 6919 4.0 4.0 4.0 1.0 6921 chrX 19136561 intergenic not near genes chrX 19140022 intergenic not near genes chrX 19143482 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-208 2421 chrX 13057298 13057300 chrX 19242812 19242814 32 6185514 11.0 17.5 14.2 2.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_32_16150001 chrX_16150001 RAL-208 2422 chrX 19256654 19256673 chrX 19256733 19256751 5 79 2.5 6.0 4.2 1.0 97 chrX 19256654 intron rictor - chrX 19256702 intron rictor - chrX 19256751 intron rictor - chrX_5_19255001 chrX_19255001 RAL-208 2423 chrX 19281001 19281032 chrX 19281130 19281161 10 129 0.0 6.5 3.2 2.4 160 chrX 19281001 intergenic CG8034 - chrX 19281081 intergenic CG8034 - chrX 19281161 intergenic CG8034 - chrX_10_19280001 chrX_19280001 RAL-208 2424 chrX 19309653 19309677 chrX 19309733 19309757 6 79 2.5 2.5 2.5 1.7 104 chrX 19309653 intergenic not near genes chrX 19309705 intergenic not near genes chrX 19309757 intergenic not near genes chrX_6_19305001 chrX_19305001 RAL-208 2425 chrX 19339745 19339773 chrX 19339821 19339849 4 76 1.5 0.5 1.0 2.0 104 chrX 19339745 intron nAChRalpha7 - chrX 19339797 intron nAChRalpha7 - chrX 19339849 intron nAChRalpha7 - chrX_4_19335001 chrX_19335001 RAL-208 2426 chrX 19356991 19357017 chrX 19358432 19358458 NOF 9 1441 5.0 0.0 2.5 2.6 1467 chrX 19356991 intron kek5 + chrX 19357724 intron kek5 + chrX 19358458 intron kek5 + chrX_9_19355001 chrX_19355001 RAL-208 2427 chrX 19380157 19380188 chrX 19380397 19380429 pogo 11 241 0.5 0.0 0.2 9.2 272 chrX 19380157 intron kek5 + chrX 19380293 intron kek5 + chrX 19380429 intron kek5 + chrX_11_19380001 chrX_19380001 RAL-208 2428 chrX 19461147 19461175 chrX 19461242 19461271 6 96 2.0 3.5 2.8 1.6 124 chrX 19461147 intron kek5 + chrX 19461209 intron kek5 + chrX 19461271 intron kek5 + chrX_6_19460001 chrX_19460001 RAL-208 2429 chrX 19472127 19472157 chrX 19472697 19472727 jockey 14 569 2.0 3.0 2.5 4.0 600 chrX 19472127 intergenic kek5 + chrX 19472427 intergenic not near genes chrX 19472727 intergenic not near genes chrX_14_19470001 chrX_19470001 RAL-208 2430 chrX 19497738 19497758 chrX 19497940 19497961 7 202 1.5 1.5 1.5 2.8 223 chrX 19497738 intron,intron CG14200 +,Pfrx + chrX 19497850 intron,intron CG14200 +,Pfrx + chrX 19497961 intron,intron CG14200 +,Pfrx + chrX_7_19495001 chrX_19495001 RAL-208 2431 chrX 19500726 19500747 chrX 19500813 19500834 10 87 0.0 3.0 1.5 4.0 108 chrX 19500726 intron,intron CG14200 +,Pfrx + chrX 19500780 intron,intron CG14200 +,Pfrx + chrX 19500834 intron,intron CG14200 +,Pfrx + chrX_10_19500001 chrX_19500001 RAL-208 2432 chrX 19541422 19541441 chrX 19541502 19541521 6 80 2.0 2.0 2.0 2.0 99 chrX 19541422 intron CG32532 - chrX 19541472 intron CG32532 - chrX 19541521 intron CG32532 - chrX_6_19540001 chrX_19540001 RAL-208 2433 chrX 19576559 19576588 chrX 19576637 19576665 8 78 3.5 2.5 3.0 2.0 106 chrX 19576559 intron Tao - chrX 19576612 intron Tao - chrX 19576665 intron Tao - chrX_8_19575001 chrX_19575001 RAL-208 2434 chrX 19593952 19593975 chrX 19594037 19594060 9 85 4.5 3.0 3.8 1.9 108 chrX 19593952 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594060 intron CG14205 + chrX_9_19590001 chrX_19590001 RAL-208 2435 chrX 19595299 19595319 chrX 19595379 19595399 12 80 3.0 2.5 2.8 3.2 100 chrX 19595299 exon CG14205 + chrX 19595349 exon CG14205 + chrX 19595399 3` UTR CG14205 + chrX_12_19595001 chrX_19595001 RAL-208 2436 chrX 19662035 19662057 chrX 19662258 19662280 6 223 1.5 2.5 2.0 2.0 245 chrX 19662035 intron CG14223 - chrX 19662158 intron CG14223 - chrX 19662280 intron CG14223 - chrX_6_19660001 chrX_19660001 RAL-208 2437 chrX 19710072 19710103 chrX 19711857 19711889 S-element 14 1786 0.5 0.0 0.2 11.7 1817 chrX 19710072 intron meso18E - chrX 19710980 intron meso18E - chrX 19711889 intron meso18E - chrX_14_19710001 chrX_19710001 RAL-208 2438 chrX 19881456 19881481 chrX 19881537 19881562 9 80 1.0 3.5 2.2 2.8 106 chrX 19881456 intron Hers + chrX 19881509 intron Hers + chrX 19881562 intron Hers + chrX_9_19880001 chrX_19880001 RAL-208 2439 chrX 19883766 19883796 chrX 19883851 19883881 24 84 1.5 2.5 2.0 8.0 115 chrX 19883766 intron Hers + chrX 19883824 intron Hers + chrX 19883881 intron Hers + chrX_24_19880001 chrX_19880001 RAL-208 2440 chrX 19884091 19884119 chrX 19884162 19884195 5 75 2.5 1.0 1.8 1.8 104 chrX 19884091 intron Hers + chrX 19884143 intron Hers + chrX 19884195 intron Hers + chrX_5_19880001 chrX_19880001 RAL-208 2441 chrX 19981228 19981246 chrX 19981307 19981325 6 79 0.0 3.5 1.8 2.1 97 chrX 19981228 intergenic not near genes chrX 19981276 intergenic not near genes chrX 19981325 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-208 2442 chrX 19983867 19983893 chrX 19983947 19983973 5 80 1.0 1.5 1.2 2.3 106 chrX 19983867 intergenic not near genes chrX 19983920 intergenic not near genes chrX 19983973 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-208 2443 chrX 20041532 20041560 chrX 20041612 20041640 13 80 3.5 2.0 2.8 3.4 108 chrX 20041532 intron Dop2R - chrX 20041586 intron Dop2R - chrX 20041640 intron Dop2R - chrX_13_20040001 chrX_20040001 RAL-208 2444 chrX 20069263 20069296 chrX 20069396 20069428 16 132 2.0 1.0 1.5 6.4 165 chrX 20069263 intergenic not near genes chrX 20069346 intergenic not near genes chrX 20069428 intergenic not near genes chrX_16_20065001 chrX_20065001 RAL-208 2445 chrX 20105195 20105230 chrX 20105299 20105333 8 103 23.0 22.5 22.8 0.3 138 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105333 intergenic not near genes chrX_8_20105001 chrX_20105001 RAL-208 2446 chrX 20166014 20166036 chrX 20166095 20166117 15 81 2.5 2.0 2.2 4.7 103 chrX 20166014 intergenic Phf7 - chrX 20166066 intergenic Phf7 - chrX 20166117 intergenic Phf7 - chrX_15_20165001 chrX_20165001 RAL-208 2447 chrX 20312888 20312910 chrX 20312966 20312988 7 78 1.0 4.5 2.8 1.8 100 chrX 20312888 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312988 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-208 2448 chrX 20320302 20320305 chrX 20320379 20320382 4 77 3.5 3.0 3.2 1.0 80 chrX 20320302 intron CG1504 - chrX 20320342 intron CG1504 - chrX 20320382 intron CG1504 - chrX_4_20320001 chrX_20320001 RAL-208 2449 chrX 20374105 20374123 chrX 20374181 20374199 5 76 0.0 4.0 2.0 1.7 94 chrX 20374105 intergenic not near genes chrX 20374152 intergenic not near genes chrX 20374199 intergenic not near genes chrX_5_20370001 chrX_20370001 RAL-208 2450 chrX 20377325 20377343 chrX 20378792 20378810 hobo 5 1467 2.0 2.0 2.0 1.7 1485 chrX 20377325 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378810 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-208 2451 chrX 20384255 20384293 chrX 20384338 20384374 8 83 0.5 4.0 2.2 2.5 119 chrX 20384255 intergenic not near genes chrX 20384314 intergenic not near genes chrX 20384374 intergenic not near genes chrX_8_20380001 chrX_20380001 RAL-208 2452 chrX 20443177 20443183 chrX 20443253 20443259 4 76 5.0 1.0 3.0 1.0 82 chrX 20443177 exon CG1695 + chrX 20443218 intron CG1695 + chrX 20443259 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-208 2453 chrX 20448441 20448444 chrX 20448525 20448528 4 84 3.0 0.0 1.5 1.6 87 chrX 20448441 intergenic not near genes chrX 20448484 intergenic not near genes chrX 20448528 intergenic not near genes chrX_4_20445001 chrX_20445001 RAL-208 2454 chrX 7640198 7640198 chrX 20491551 20491554 4 12851354 13.5 5.0 9.2 0.4 12851356 chrX 7640198 intron ct + chrX 14065876 intergenic not near genes chrX 20491554 intron RhoGAP19D - chrX_4_14065001 chrX_14065001 RAL-208 2455 chrX 20493910 20493926 chrX 20494070 20494087 10 161 0.0 2.5 1.2 4.5 177 chrX 20493910 intron RhoGAP19D - chrX 20493998 intron RhoGAP19D - chrX 20494087 intron RhoGAP19D - chrX_10_20490001 chrX_20490001 RAL-208 2456 chrX 20578156 20578169 chrX 20578273 20578286 11 117 4.0 1.5 2.8 2.9 130 chrX 20578156 intergenic not near genes chrX 20578221 intergenic not near genes chrX 20578286 intergenic not near genes chrX_11_20575001 chrX_20575001 RAL-208 2457 chrX 20587564 20587570 chrX 20587690 20587696 7 126 6.0 2.5 4.2 1.3 132 chrX 20587564 intergenic not near genes chrX 20587630 intergenic not near genes chrX 20587696 intergenic not near genes chrX_7_20585001 chrX_20585001 RAL-208 2458 chrX 20635433 20635447 chrX 20635599 20635613 4 165 2.5 3.0 2.8 1.1 180 chrX 20635433 intergenic not near genes chrX 20635523 intergenic not near genes chrX 20635613 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-208 2459 chrX 20710421 20710435 chrX 20710496 20710512 4 76 0.0 3.0 1.5 1.6 91 chrX 20710421 intergenic not near genes chrX 20710466 intergenic not near genes chrX 20710512 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-208 2460 chrX 20714536 20714566 chrX 20714689 20714719 12 153 0.5 1.0 0.8 6.7 183 chrX 20714536 intergenic not near genes chrX 20714628 intergenic not near genes chrX 20714719 intergenic not near genes chrX_12_20710001 chrX_20710001 RAL-208 2461 chrX 20814201 20814222 chrX 20814295 20814316 10 93 2.5 3.0 2.8 2.6 115 chrX 20814201 intron shakB - chrX 20814258 intron shakB - chrX 20814316 intron shakB - chrX_10_20810001 chrX_20810001 RAL-208 2462 chrX 20836726 20836759 chrX 20844328 20844361 roo 8 7602 2.5 2.5 2.5 2.3 7635 chrX 20836726 intron shakB - chrX 20840544 intron shakB - chrX 20844361 intron shakB - chrX_8_20840001 chrX_20840001 RAL-208 2463 chrX 20890513 20890546 chrX 20890598 20890631 6 84 1.0 2.5 1.8 2.1 118 chrX 20890513 intron shakB - chrX 20890572 intron shakB - chrX 20890631 intron shakB - chrX_6_20890001 chrX_20890001 RAL-208 2464 chrX 20915050 20915073 chrX 20915221 20915244 9 171 2.5 1.0 1.8 3.2 194 chrX 20915050 intron shakB - chrX 20915147 intron shakB - chrX 20915244 intron shakB - chrX_9_20915001 chrX_20915001 RAL-208 2465 chrX 20940719 20940750 chrX 20942188 20942216 hobo 11 1468 2.5 3.0 2.8 2.9 1497 chrX 20940719 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942216 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-208 2466 chrX 21008669 21008669 chrX 21008749 21008756 4 84 6.0 0.5 3.2 1.0 87 chrX 21008669 intergenic not near genes chrX 21008712 intergenic not near genes chrX 21008756 intergenic not near genes chrX_4_21005001 chrX_21005001 RAL-208 2467 chrX 21009833 21009839 chrX 21009939 21009947 4 108 2.5 5.5 4.0 0.8 114 chrX 21009833 intergenic not near genes chrX 21009890 intergenic not near genes chrX 21009947 intergenic not near genes chrX_4_21005001 chrX_21005001 RAL-208 2468 chrX 21029171 21029182 chrX 21029388 21029397 4 216 0.0 8.5 4.2 0.8 226 chrX 21029171 3` UTR CG1529 - chrX 21029284 3` UTR CG1529 - chrX 21029397 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-208 2469 chrX 21042555 21042592 chrX 21045340 21045377 10 2785 36.0 19.0 27.5 0.4 2822 chrX 21042555 exon Mgstl + chrX 21043966 exon,3` UTR Mgstl +,CR44431 - chrX 21045377 intron Cbs + chrX_10_21040001 chrX_21040001 RAL-208 2470 chrX 21061871 21061894 chrX 21062356 21062377 roo 8 485 3.5 2.0 2.8 2.1 506 chrX 21061871 intron bves + chrX 21062124 intron bves + chrX 21062377 intron,3` UTR bves +,CG32512 - chrX_8_21060001 chrX_21060001 RAL-208 2471 chrX 21086132 21086157 chrX 21087161 21087186 jockey 5 1029 0.0 1.5 0.8 2.8 1054 chrX 21086132 intergenic not near genes chrX 21086659 intergenic not near genes chrX 21087186 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-208 2472 chrX 21088041 21088073 chrX 21088173 21088205 11 131 0.5 1.5 1.0 5.5 164 chrX 21088041 intergenic not near genes chrX 21088123 intergenic not near genes chrX 21088205 intergenic not near genes chrX_11_21085001 chrX_21085001 RAL-208 2473 chrX 21092653 21092688 chrX 21092731 21092766 15 78 2.5 0.5 1.5 6.0 113 chrX 21092653 intergenic not near genes chrX 21092710 intergenic not near genes chrX 21092766 intergenic not near genes chrX_15_21090001 chrX_21090001 RAL-208 2474 chrX 21264730 21264757 chrX 21264806 21264833 14 76 2.0 2.5 2.2 4.4 103 chrX 21264730 intron CG32521 - chrX 21264782 intron CG32521 - chrX 21264833 intron CG32521 - chrX_14_21260001 chrX_21260001 RAL-208 2475 chrX 21275161 21275193 chrX 21275239 21275271 13 78 0.5 0.0 0.2 10.8 110 chrX 21275161 intron CG32521 - chrX 21275216 intron CG32521 - chrX 21275271 intron CG32521 - chrX_13_21275001 chrX_21275001 RAL-208 2476 chrX 21328128 21328148 chrX 21328239 21328259 6 111 0.5 0.5 0.5 4.0 131 chrX 21328128 3` UTR CG1486 + chrX 21328194 intergenic CG1486 +,tty - chrX 21328259 intergenic CG1486 +,tty - chrX_6_21325001 chrX_21325001 RAL-208 2477 chrX 21455215 21455227 chrX 21455394 21455403 6 178 2.5 0.0 1.2 2.7 188 chrX 21455215 intron CG42343 - chrX 21455309 intron CG42343 - chrX 21455403 intron CG42343 - chrX_6_21455001 chrX_21455001 RAL-208 2478 chrX 21458697 21458731 chrX 21464133 21464167 Ivk 13 5436 0.0 5.0 2.5 3.7 5470 chrX 21458697 intergenic not near genes chrX 21461432 intergenic not near genes chrX 21464167 intergenic not near genes chrX_13_21460001 chrX_21460001 RAL-208 2479 chrX 21516986 21517014 chrX 21517065 21517093 4 78 5.0 5.0 5.0 0.7 107 chrX 21516986 intron CR45082 - chrX 21517040 intron CR45082 - chrX 21517093 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-208 2480 chrX 21565418 21565443 chrX 21565496 21565521 10 78 2.0 3.0 2.5 2.9 103 chrX 21565418 intergenic not near genes chrX 21565470 intergenic not near genes chrX 21565521 intergenic not near genes chrX_10_21565001 chrX_21565001 RAL-208 2481 chrX 21576433 21576447 chrX 21576755 21576769 5 322 4.5 2.0 3.2 1.2 336 chrX 21576433 intergenic not near genes chrX 21576601 intergenic not near genes chrX 21576769 intergenic not near genes chrX_5_21575001 chrX_21575001 RAL-208 2482 chrX 21624910 21624947 chrX 21625000 21625035 8 89 1.5 2.0 1.8 2.9 125 chrX 21624910 3` UTR DIP1 - chrX 21624972 3` UTR DIP1 - chrX 21625035 3` UTR DIP1 - chrX_8_21620001 chrX_21620001 RAL-208 2483 chrX 21631078 21631113 chrX 21631163 21631198 5 85 0.5 4.0 2.2 1.6 120 chrX 21631078 intron CR44712 + chrX 21631138 5` UTR CR44712 + chrX 21631198 5` UTR CR44712 + chrX_5_21630001 chrX_21630001 RAL-208 2484 chrX 21668268 21668287 chrX 21668353 21668372 6 85 1.0 0.5 0.8 3.3 104 chrX 21668268 intergenic not near genes chrX 21668320 intergenic not near genes chrX 21668372 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-208 2485 chrX 22448280 22448285 chrX 22448419 22448424 4 138 6.0 4.0 5.0 0.7 144 chrX 22448280 intron CG14615 - chrX 22448352 intron CG14615 - chrX 22448424 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-208 2486 chrX 22452787 22452820 chrX 22452867 22452900 13 80 5.5 3.0 4.2 2.5 113 chrX 22452787 3` UTR wap - chrX 22452844 3` UTR wap - chrX 22452900 3` UTR wap - chrX_13_22450001 chrX_22450001 RAL-208 2487 chrX 22522630 22522660 chrX 22525450 22525477 NOF 11 2819 2.5 3.0 2.8 2.9 2847 chrX 22522630 intron CG17600 + chrX 22524054 intron CG17600 + chrX 22525477 intron CG17600 + chrX_11_22520001 chrX_22520001 RAL-208 2488 chrX 22564558 22564568 chrX 22575130 22575140 jockey 4 10572 7.0 5.5 6.2 0.6 10582 chrX 22564558 intergenic not near genes chrX 22569849 intergenic not near genes chrX 22575140 intergenic not near genes chrX_4_22565001 chrX_22565001 RAL-208 2489 chrX 22660113 22660146 chrX 22660654 22660687 8 541 1.5 2.5 2.0 2.7 574 chrX 22660113 intron CR44997 + chrX 22660400 intron CR44997 + chrX 22660687 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-208 2490 chrX 22665811 22665827 chrX 22665890 22665906 4 78 1.5 3.0 2.2 1.2 95 chrX 22665811 intron CR44997 + chrX 22665858 intron CR44997 + chrX 22665906 intron CR44997 + chrX_4_22665001 chrX_22665001 RAL-208 2491 chrX 22697495 22697518 chrX 22701792 22701815 Juan 6 4297 5.5 6.5 6.0 0.9 4320 chrX 22697495 intron CR44997 + chrX 22699655 intron CR44997 + chrX 22701815 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-208 2492 chrX 22784090 22784100 chrX 22784173 22784183 4 83 0.5 1.5 1.0 2.0 93 chrX 22784090 intron CR44997 + chrX 22784136 intron CR44997 + chrX 22784183 intron CR44997 + chrX_4_22780001 chrX_22780001 RAL-208 2493 chrX 22785613 22785640 chrX 22785703 22785731 13 91 2.0 1.0 1.5 5.2 118 chrX 22785613 intron CR44997 + chrX 22785672 intron CR44997 + chrX 22785731 intron CR44997 + chrX_13_22785001 chrX_22785001 RAL-208 2494 chrX 22811993 22812005 chrX 22816765 22816777 F-element 4 4772 6.5 2.0 4.2 0.8 4784 chrX 22811993 intergenic CG12446 - chrX 22814385 intergenic not near genes chrX 22816777 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-208 2495 chrX 22820972 22820995 chrX 22821160 22821183 5 188 3.0 4.0 3.5 1.1 211 chrX 22820972 intergenic not near genes chrX 22821078 intergenic not near genes chrX 22821183 intergenic not near genes chrX_5_22820001 chrX_22820001 RAL-208 2496 chrX 22870892 22870897 chrX 22870983 22870988 5 91 3.0 7.5 5.2 0.8 96 chrX 22870892 intron,3` UTR CG42346 +,CR43656 - chrX 22870940 intron,3` UTR CG42346 +,CR43656 - chrX 22870988 intron,3` UTR CG42346 +,CR43656 - chrX_5_22870001 chrX_22870001 RAL-208 2497 chrX 22908988 22908991 chrX 22913213 22913216 Burdock 5 4225 3.0 6.0 4.5 0.9 4228 chrX 22908988 intergenic not near genes chrX 22911102 intergenic not near genes chrX 22913216 intergenic not near genes chrX_5_22910001 chrX_22910001 RAL-208 2498 chrX 22987103 22987122 chrX 22989762 22989781 Burdock 7 2659 2.0 0.0 1.0 3.5 2678 chrX 22987103 intron,intron stnA -,stnB - chrX 22988442 intron,intron stnA -,stnB - chrX 22989781 intron,intron stnA -,stnB - chrX_7_22985001 chrX_22985001 RAL-208 2499 chrX 22996314 22996341 chrX 23003546 23003573 roo 8 7232 3.0 1.5 2.2 2.5 7259 chrX 22996314 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003573 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-208 2500 chrX 23036383 23036408 chrX 23037784 23037809 pogo 6 1401 3.5 0.5 2.0 2.0 1426 chrX 23036383 intron CG12061 + chrX 23037096 intron CG12061 + chrX 23037809 intron CG12061 + chrX_6_23035001 chrX_23035001 RAL-208 2501 chrY 975600 975819 chrY 975715 975899 7 90 93.0 67.5 80.2 0.1 299 chrY 975600 intergenic not near genes chrY 975750 intergenic not near genes chrY 975899 intergenic not near genes chrY_7_975001 chrY_975001 RAL-208 2502 chrY 3666443 3666451 chrY 3666596 3666604 5 153 0.0 0.0 0.0 5.0 161 chrY 3666443 intergenic not near genes chrY 3666524 intergenic not near genes chrY 3666604 intergenic not near genes chrY_5_3665001 chrY_3665001 RAL-208