SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47459	47489	chr2L	52564	52593	jockey	15	5102	12.5	7.5	10.0	1.4	5134	chr2L	47459	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52593	intron	Cda5 -	chr2L_15_50001	chr2L_50001	RAL-181
3	chr2L	347888	347914	chr2L	355388	355407	blood	7	7498	4.5	3.0	3.8	1.5	7519	chr2L	347888	3` UTR	Plc21C +	chr2L	351648	intron	Plc21C +	chr2L	355407	3` UTR	Plc21C +	chr2L_7_350001	chr2L_350001	RAL-181
7	chr2L	686931	686951	chr2L	695958	695987	roo	8	9036	1.5	7.0	4.2	1.5	9056	chr2L	686931	intron	ds -	chr2L	691459	intron	ds -	chr2L	695987	intron	ds -	chr2L_8_690001	chr2L_690001	RAL-181
10	chr2L	770463	770491	chr2L	772244	772262	Bari1	10	1776	4.0	8.5	6.2	1.4	1799	chr2L	770463	intergenic	not near genes	chr2L	771362	intergenic	not near genes	chr2L	772262	intergenic	CR44614 +	chr2L_10_770001	chr2L_770001	RAL-181
20	chr2L	976885	976907	chr2L	984521	984543	roo	11	7634	6.0	1.0	3.5	2.4	7658	chr2L	976885	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984543	intergenic	not near genes	chr2L_11_980001	chr2L_980001	RAL-181
24	chr2L	1220127	1220158	chr2L	1227593	1227619	blood	20	7464	7.5	2.0	4.8	3.4	7492	chr2L	1220127	intron	CG42329 +	chr2L	1223873	intron	CG42329 +	chr2L	1227619	intron	CG42329 +	chr2L_20_1220001	chr2L_1220001	RAL-181
25	chr2L	1301751	1301783	chr2L	1302290	1302322	gypsy	8	537	1.0	1.0	1.0	4.0	571	chr2L	1301751	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302322	intergenic	not near genes	chr2L_8_1300001	chr2L_1300001	RAL-181
32	chr2L	1570683	1570719	chr2L	1573555	1573591	F-element	10	2872	6.0	5.5	5.8	1.5	2908	chr2L	1570683	intron	haf +	chr2L	1572137	intron	haf +	chr2L	1573591	intron	haf +	chr2L_10_1570001	chr2L_1570001	RAL-181
39	chr2L	1678997	1679010	chr2L	1686451	1686475	blood	6	7457	0.0	7.0	3.5	1.3	7478	chr2L	1678997	intron	chinmo +	chr2L	1682736	intron	chinmo +	chr2L	1686475	intron	chinmo +	chr2L_6_1680001	chr2L_1680001	RAL-181
40	chr2L	1711354	1711387	chr2L	1711678	1711680	mdg3	13	317	4.0	8.5	6.2	1.8	326	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711517	3` UTR	frtz -	chr2L	1711680	3` UTR	frtz -	chr2L_13_1710001	chr2L_1710001	RAL-181
46	chr2L	2100385	2100387	chr2L	2109526	2109538	roo	5	9149	9.5	6.0	7.8	0.6	9153	chr2L	2100385	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109538	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-181
47	chr2L	2100388	2100407	chr2L	2109525	2109558	roo	12	9148	15.5	5.5	10.5	1.0	9170	chr2L	2100388	intron	dpr3 -	chr2L	2104973	intron	dpr3 -	chr2L	2109558	intron	dpr3 -	chr2L_12_2100001	chr2L_2100001	RAL-181
48	chr2L	2112118	2112146	chr2L	2119774	2119808	opus	15	7656	2.0	7.5	4.8	2.6	7690	chr2L	2112118	intergenic	not near genes	chr2L	2115963	intergenic	not near genes	chr2L	2119808	intergenic	not near genes	chr2L_15_2115001	chr2L_2115001	RAL-181
57	chr2L	2294054	2294073	chr2L	2299244	2299266	copia	4	5197	1.5	2.5	2.0	1.3	5212	chr2L	2294054	intergenic	not near genes	chr2L	2296660	intergenic	not near genes	chr2L	2299266	intergenic	not near genes	chr2L_4_2295001	chr2L_2295001	RAL-181
61	chr2L	2565538	2565570	chr2L	2571604	2571629	297	8	6064	3.5	1.5	2.5	2.3	6091	chr2L	2565538	exon	Cyp309a2 -	chr2L	2568584	intron	Cyp309a2 -	chr2L	2571629	intron	Cyp309a2 -	chr2L_8_2565001	chr2L_2565001	RAL-181
64	chr2L	2661200	2661232	chr2L	2663031	2663070	I-element	15	1833	4.0	1.0	2.5	4.3	1870	chr2L	2661200	intergenic	not near genes	chr2L	2662135	intergenic	not near genes	chr2L	2663070	intergenic	not near genes	chr2L_15_2660001	chr2L_2660001	RAL-181
71	chr2L	3073032	3073038	chr2L	3078235	3078241	copia	4	5203	7.0	3.5	5.2	0.6	5209	chr2L	3073032	intron	toc -	chr2L	3075636	intron	toc -	chr2L	3078241	intron	toc -	chr2L_4_3075001	chr2L_3075001	RAL-181
72	chr2L	3073041	3073064	chr2L	3078233	3078267	copia	7	5201	2.5	3.0	2.8	1.8	5226	chr2L	3073041	intron	toc -	chr2L	3075654	intron	toc -	chr2L	3078267	intron	toc -	chr2L_7_3075001	chr2L_3075001	RAL-181
76	chr2L	3202740	3202761	chr2L	3210169	3210190	mdg1	5	7429	2.5	1.5	2.0	1.7	7450	chr2L	3202740	intergenic	not near genes	chr2L	3206465	intergenic	not near genes	chr2L	3210190	intergenic	CR45336 +	chr2L_5_3205001	chr2L_3205001	RAL-181
78	chr2L	3251495	3251525	chr2L	3259060	3259090	springer	11	7563	4.5	6.5	5.5	1.7	7595	chr2L	3251495	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259090	intergenic	not near genes	chr2L_11_3255001	chr2L_3255001	RAL-181
84	chr2L	3649790	3649803	chr2L	3654991	3654995	copia	4	5199	0.0	4.5	2.2	1.2	5205	chr2L	3649790	intron	for -	chr2L	3652392	intron	for -	chr2L	3654995	intron	for -	chr2L_4_3650001	chr2L_3650001	RAL-181
92	chr2L	4066040	4066066	chr2L	4068865	4068891	Juan	10	2825	5.5	6.5	6.0	1.4	2851	chr2L	4066040	intron	ed +	chr2L	4067466	intron	ed +	chr2L	4068891	intron	ed +	chr2L_10_4065001	chr2L_4065001	RAL-181
99	chr2L	4601706	4601734	chr2L	4609143	4609175	mdg1	15	7439	5.5	8.5	7.0	1.9	7469	chr2L	4601706	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609175	intron	dp -	chr2L_15_4605001	chr2L_4605001	RAL-181
105	chr2L	4953515	4953542	chr2L	4953756	4953783	pogo	7	241	7.0	2.0	4.5	1.3	268	chr2L	4953515	intergenic	Jon25Bii -	chr2L	4953649	intergenic	not near genes	chr2L	4953783	intergenic	Jon25Bi -	chr2L_7_4950001	chr2L_4950001	RAL-181
115	chr2L	5342778	5342800	chr2L	5345148	5345180	Doc	6	2378	4.0	3.0	3.5	1.3	2402	chr2L	5342778	intergenic	not near genes	chr2L	5343979	intergenic	not near genes	chr2L	5345180	intergenic	not near genes	chr2L_6_5340001	chr2L_5340001	RAL-181
123	chr2L	5827712	5827735	chr2L	5836719	5836741	roo	14	9006	8.0	8.5	8.2	1.5	9029	chr2L	5827712	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836741	intron	TrissinR +	chr2L_14_5830001	chr2L_5830001	RAL-181
124	chr2L	5827738	5827741	chr2L	5836718	5836749	roo	7	9003	7.5	8.5	8.0	0.8	9011	chr2L	5827738	intron	TrissinR +	chr2L	5832244	intron	TrissinR +	chr2L	5836749	intron	TrissinR +	chr2L_7_5830001	chr2L_5830001	RAL-181
135	chr2L	6363149	6363182	chr2L	6366070	6366098	Burdock	13	2917	3.0	7.0	5.0	2.2	2949	chr2L	6363149	intergenic	not near genes	chr2L	6364624	intergenic	not near genes	chr2L	6366098	intergenic	not near genes	chr2L_13_6360001	chr2L_6360001	RAL-181
136	chr2L	6426854	6426888	chr2L	6445113	6445148	roo	21	18257	3.5	10.0	6.8	2.7	18294	chr2L	6426854	3` UTR	CG9527 -	chr2L	6436001	intron	CG9527 -	chr2L	6445148	exon	CG9527 -	chr2L_21_6435001	chr2L_6435001	RAL-181
147	chr2L	6876787	6876809	chr2L	6882963	6882985	diver	9	6181	9.5	2.5	6.0	1.3	6198	chr2L	6876787	intron	Nlg2 +	chr2L	6879886	intron	Nlg2 +	chr2L	6882985	intron	Nlg2 +	chr2L_9_6875001	chr2L_6875001	RAL-181
157	chr2L	7343325	7343358	chr2L	7350441	7350469	roo	11	7113	4.5	3.0	3.8	2.3	7144	chr2L	7343325	intron	Wnt6 +	chr2L	7346897	intron	Wnt6 +	chr2L	7350469	intron	Wnt6 +	chr2L_11_7345001	chr2L_7345001	RAL-181
166	chr2L	7959046	7959056	chr2L	7960456	7960467	pogo	7	1409	7.5	8.0	7.8	0.8	1421	chr2L	7959046	intron	Snoo -	chr2L	7959756	intron	Snoo -	chr2L	7960467	intron	Snoo -	chr2L_7_7955001	chr2L_7955001	RAL-181
167	chr2L	7977092	7977112	chr2L	7984065	7984088	297	5	6973	3.5	3.0	3.2	1.2	6996	chr2L	7977092	intron	Snoo -	chr2L	7980590	intron	Snoo -	chr2L	7984088	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-181
169	chr2L	8013614	8013634	chr2L	8018819	8018837	copia	8	5204	5.0	0.5	2.8	2.1	5223	chr2L	8013614	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_8_8015001	chr2L_8015001	RAL-181
170	chr2L	8018826	8018835	chr2L	8023596	8023617	Doc	4	4776	0.0	2.5	1.2	1.8	4791	chr2L	8018826	intron	Tg +	chr2L	8021222	intron	Tg +	chr2L	8023617	intron	Tg +	chr2L_4_8020001	chr2L_8020001	RAL-181
179	chr2L	8452416	8452431	chr2L	8461590	8461602	roo	4	9173	3.0	2.5	2.8	1.1	9186	chr2L	8452416	intron	fu12 -	chr2L	8457009	intron	fu12 -	chr2L	8461602	intron	fu12 -	chr2L_4_8455001	chr2L_8455001	RAL-181
183	chr2L	8594474	8594498	chr2L	8601519	8601552	297	5	7049	1.0	1.0	1.0	2.5	7078	chr2L	8594474	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598013	intron	Sema-1a +	chr2L	8601552	intron	Sema-1a +	chr2L_5_8595001	chr2L_8595001	RAL-181
186	chr2L	8723120	8723144	chr2L	8731497	8731520	Tirant	9	8375	5.5	5.5	5.5	1.4	8400	chr2L	8723120	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731520	intron	raw -	chr2L_9_8725001	chr2L_8725001	RAL-181
196	chr2L	9217969	9218002	chr2L	9222754	9222783	Doc	12	4784	2.0	7.0	4.5	2.2	4814	chr2L	9217969	intron	tai +	chr2L	9220376	intron	tai +	chr2L	9222783	intron	tai +	chr2L_12_9220001	chr2L_9220001	RAL-181
203	chr2L	9393502	9393518	chr2L	9396463	9396482	jockey	5	2965	0.0	4.5	2.2	1.6	2980	chr2L	9393502	intron	Shawl -	chr2L	9394992	intron	Shawl -	chr2L	9396482	intron	Shawl -	chr2L_5_9390001	chr2L_9390001	RAL-181
209	chr2L	9973732	9973759	chr2L	9980846	9980875	HMS-Beagle	17	7116	8.0	8.0	8.0	1.9	7143	chr2L	9973732	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980875	intergenic	not near genes	chr2L_17_9975001	chr2L_9975001	RAL-181
214	chr2L	10156326	10156355	chr2L	10163790	10163825	blood	16	7466	6.0	3.0	4.5	2.9	7499	chr2L	10156326	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160076	intron	CG44153 -	chr2L	10163825	intron	CG44153 -	chr2L_16_10160001	chr2L_10160001	RAL-181
222	chr2L	10862849	10862880	chr2L	10864453	10864471	Rt1c	13	1603	4.5	7.0	5.8	1.9	1622	chr2L	10862849	3` UTR	CR43807 -	chr2L	10863660	intron	CR43807 -	chr2L	10864471	3` UTR	CR43807 -	chr2L_13_10860001	chr2L_10860001	RAL-181
224	chr2L	10946967	10946972	chr2L	10956159	10956187	roo	6	9207	5.0	8.5	6.8	0.8	9220	chr2L	10946967	intron	dpr2 -	chr2L	10951577	intron	dpr2 -	chr2L	10956187	intron	dpr2 -	chr2L_6_10950001	chr2L_10950001	RAL-181
235	chr2L	11563638	11563670	chr2L	11568842	11568874	copia	13	5203	3.5	5.5	4.5	2.4	5236	chr2L	11563638	intergenic	not near genes	chr2L	11566256	intergenic	not near genes	chr2L	11568874	intergenic	not near genes	chr2L_13_11565001	chr2L_11565001	RAL-181
236	chr2L	11614078	11614084	chr2L	11615548	11615565	hopper2	5	1481	1.5	5.0	3.2	1.2	1487	chr2L	11614078	intron	kek2 +	chr2L	11614822	intron	kek2 +	chr2L	11615565	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-181
239	chr2L	11713513	11713530	chr2L	11720977	11720990	blood	10	7465	5.0	4.0	4.5	1.8	7477	chr2L	11713513	intergenic	not near genes	chr2L	11717252	intergenic	not near genes	chr2L	11720990	intergenic	CR44143 +	chr2L_10_11715001	chr2L_11715001	RAL-181
240	chr2L	11713531	11713539	chr2L	11720973	11721006	blood	9	7464	4.0	3.5	3.8	1.9	7475	chr2L	11713531	intergenic	not near genes	chr2L	11717268	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_9_11715001	chr2L_11715001	RAL-181
243	chr2L	12067344	12067361	chr2L	12074388	12074413	297	6	7051	2.0	3.0	2.5	1.7	7069	chr2L	12067344	intergenic	not near genes	chr2L	12070878	intergenic	not near genes	chr2L	12074413	intergenic	not near genes	chr2L_6_12070001	chr2L_12070001	RAL-181
256	chr2L	12558320	12558345	chr2L	12565447	12565474	HMS-Beagle	13	7127	2.5	2.5	2.5	3.7	7154	chr2L	12558320	intergenic	not near genes	chr2L	12561897	intergenic	not near genes	chr2L	12565474	intergenic	not near genes	chr2L_13_12560001	chr2L_12560001	RAL-181
258	chr2L	12731054	12731091	chr2L	12735821	12735824	F-element	6	4761	4.0	1.5	2.8	1.6	4770	chr2L	12731054	intron	MRP +	chr2L	12733439	intron	MRP +	chr2L	12735824	intron	MRP +	chr2L_6_12730001	chr2L_12730001	RAL-181
259	chr2L	12739181	12739206	chr2L	12743962	12743979	Doc	12	4778	2.5	7.0	4.8	2.1	4798	chr2L	12739181	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743979	exon	MRP +	chr2L_12_12740001	chr2L_12740001	RAL-181
261	chr2L	12781805	12781812	chr2L	12789248	12789255	Quasimodo	5	7443	8.5	7.0	7.8	0.6	7450	chr2L	12781805	intergenic	not near genes	chr2L	12785530	intergenic	not near genes	chr2L	12789255	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-181
263	chr2L	12861694	12861731	chr2L	12863161	12863182	hobo	24	1462	4.0	8.0	6.0	3.4	1488	chr2L	12861694	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_24_12860001	chr2L_12860001	RAL-181
264	chr2L	12894021	12894047	chr2L	12895487	12895495	hobo	6	1456	12.5	6.5	9.5	0.6	1474	chr2L	12894021	intergenic	not near genes	chr2L	12894758	intergenic	not near genes	chr2L	12895495	intergenic	not near genes	chr2L_6_12890001	chr2L_12890001	RAL-181
266	chr2L	12933853	12933882	chr2L	12941320	12941349	blood	13	7464	7.0	8.0	7.5	1.5	7496	chr2L	12933853	intergenic	not near genes	chr2L	12937601	intergenic	not near genes	chr2L	12941349	intergenic	not near genes	chr2L_13_12935001	chr2L_12935001	RAL-181
271	chr2L	13405655	13405679	chr2L	13410451	13410476	Doc	11	4795	6.5	7.0	6.8	1.4	4821	chr2L	13405655	exon	CG7110 +	chr2L	13408066	intron	CG7110 +	chr2L	13410476	intron	CG7110 +	chr2L_11_13405001	chr2L_13405001	RAL-181
272	chr2L	13449464	13449491	chr2L	13456900	13456907	Quasimodo	7	7433	3.5	4.0	3.8	1.5	7443	chr2L	13449464	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453186	intron	CG42784 +	chr2L	13456907	intron	CG42784 +	chr2L_7_13450001	chr2L_13450001	RAL-181
273	chr2L	13481453	13481475	chr2L	13482052	13482067	jockey	12	603	6.0	5.5	5.8	1.8	614	chr2L	13481453	intron	CG42784 +	chr2L	13481760	intron	CG42784 +	chr2L	13482067	intron	CG42784 +	chr2L_12_13480001	chr2L_13480001	RAL-181
276	chr2L	13761813	13761834	chr2L	13762924	13762944	Doc	4	1110	7.0	5.0	6.0	0.6	1131	chr2L	13761813	intron	TM9SF4 +	chr2L	13762378	intron	TM9SF4 +	chr2L	13762944	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-181
277	chr2L	13853085	13853116	chr2L	13862233	13862266	roo	16	9148	7.0	2.5	4.8	2.8	9181	chr2L	13853085	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_16_13855001	chr2L_13855001	RAL-181
299	chr2L	14803882	14803911	chr2L	14809082	14809098	copia	14	5201	5.5	4.0	4.8	2.4	5216	chr2L	14803882	intergenic	not near genes	chr2L	14806490	intergenic	not near genes	chr2L	14809098	intergenic	not near genes	chr2L_14_14805001	chr2L_14805001	RAL-181
307	chr2L	15446050	15446083	chr2L	15453519	15453552	blood	5	7469	3.0	3.5	3.2	1.2	7502	chr2L	15446050	intergenic	not near genes	chr2L	15449801	intergenic	not near genes	chr2L	15453552	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-181
310	chr2L	15586422	15586441	chr2L	15593468	15593493	297	5	7050	3.0	5.5	4.2	1.0	7071	chr2L	15586422	intergenic	not near genes	chr2L	15589958	intergenic	not near genes	chr2L	15593493	intergenic	not near genes	chr2L_5_15585001	chr2L_15585001	RAL-181
313	chr2L	15956022	15956058	chr2L	15957489	15957521	hobo	13	1465	4.5	2.0	3.2	3.1	1499	chr2L	15956022	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957521	intron	beat-Ib -	chr2L_13_15955001	chr2L_15955001	RAL-181
317	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	31.0	36.0	33.5	0.1	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-181
321	chr2L	16280257	16280283	chr2L	16281425	16281454	1360	16	1167	3.0	8.0	5.5	2.5	1197	chr2L	16280257	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281454	intron	crp -	chr2L_16_16280001	chr2L_16280001	RAL-181
329	chr2L	16958103	16958136	chr2L	16962891	16962921	Doc	10	4787	0.5	5.5	3.0	2.5	4818	chr2L	16958103	intergenic	not near genes	chr2L	16960512	intergenic	not near genes	chr2L	16962921	intergenic	not near genes	chr2L_10_16960001	chr2L_16960001	RAL-181
341	chr2L	17167568	17167592	chr2L	17167809	17167833	pogo	7	239	3.0	5.0	4.0	1.4	265	chr2L	17167568	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167833	intron,intron	CG34106 +,beat-IIIa +	chr2L_7_17165001	chr2L_17165001	RAL-181
345	chr2L	17273199	17273221	chr2L	17277971	17278004	F-element	10	4781	9.0	7.0	8.0	1.1	4805	chr2L	17273199	intergenic	not near genes	chr2L	17275602	intergenic	not near genes	chr2L	17278004	intergenic	not near genes	chr2L_10_17275001	chr2L_17275001	RAL-181
355	chr2L	17819922	17819953	chr2L	17825125	17825152	copia	9	5201	2.0	3.5	2.8	2.4	5230	chr2L	17819922	intron	CadN2 -	chr2L	17822537	intron	CadN2 -	chr2L	17825152	intron	CadN2 -	chr2L_9_17820001	chr2L_17820001	RAL-181
357	chr2L	17911963	17911989	chr2L	17914141	17914161	pogo	6	2173	5.0	5.5	5.2	1.0	2198	chr2L	17911963	intergenic	not near genes	chr2L	17913062	intergenic	not near genes	chr2L	17914161	intergenic	CG43271 -	chr2L_6_17910001	chr2L_17910001	RAL-181
358	chr2L	17951947	17951972	chr2L	17953414	17953436	hobo	9	1466	3.0	4.0	3.5	2.0	1489	chr2L	17951947	intergenic	CR44398 -,CR44397 -	chr2L	17952692	intergenic	not near genes	chr2L	17953436	intergenic	not near genes	chr2L_9_17950001	chr2L_17950001	RAL-181
360	chr2L	18051878	18051906	chr2L	18061025	18061053	roo	12	9144	6.5	2.0	4.2	2.3	9175	chr2L	18051878	intron	rdo +	chr2L	18056466	intron	rdo +	chr2L	18061053	intron	rdo +	chr2L_12_18055001	chr2L_18055001	RAL-181
369	chr2L	18408023	18408055	chr2L	18412807	18412830	Doc	9	4783	6.5	4.0	5.2	1.5	4807	chr2L	18408023	intergenic	not near genes	chr2L	18410426	intergenic	not near genes	chr2L	18412830	intergenic	not near genes	chr2L_9_18410001	chr2L_18410001	RAL-181
376	chr2L	19147369	19147402	chr2L	19154403	19154437	297	14	7032	3.5	6.5	5.0	2.3	7068	chr2L	19147369	intron	brat +	chr2L	19150903	intron	brat +	chr2L	19154437	intron	brat +	chr2L_14_19150001	chr2L_19150001	RAL-181
380	chr2L	19345014	19345033	chr2L	19357223	19357242	blood	8	12208	8.5	5.5	7.0	1.0	12228	chr2L	19345014	intron	dnt -	chr2L	19351128	intron	dnt -	chr2L	19357242	intron	dnt -	chr2L_8_19350001	chr2L_19350001	RAL-181
381	chr2L	19345036	19345050	chr2L	19357216	19357249	blood	6	12194	4.0	5.0	4.5	1.1	12213	chr2L	19345036	intron	dnt -	chr2L	19351142	intron	dnt -	chr2L	19357249	intron	dnt -	chr2L_6_19350001	chr2L_19350001	RAL-181
388	chr2L	19620093	19620132	chr2L	19621082	19621121	jockey	24	987	7.5	9.5	8.5	2.5	1028	chr2L	19620093	intron	Lar +	chr2L	19620607	intron	Lar +	chr2L	19621121	intron	Lar +	chr2L_24_19620001	chr2L_19620001	RAL-181
391	chr2L	19652573	19652603	chr2L	19674009	19674039	opus	13	21433	2.5	3.0	2.8	3.4	21466	chr2L	19652573	intron	Lar +	chr2L	19663306	intron	Lar +	chr2L	19674039	intron	Lar +	chr2L_13_19660001	chr2L_19660001	RAL-181
392	chr2L	19703539	19703567	chr2L	19712675	19712703	roo	11	9135	4.5	6.5	5.5	1.7	9164	chr2L	19703539	intron	Lar +	chr2L	19708121	intron	Lar +	chr2L	19712703	intron	Lar +	chr2L_11_19705001	chr2L_19705001	RAL-181
393	chr2L	19737362	19737387	chr2L	19740822	19740856	1360	12	3461	6.0	6.5	6.2	1.7	3494	chr2L	19737362	intergenic	Nf-YB +	chr2L	19739109	intergenic	not near genes	chr2L	19740856	intergenic	not near genes	chr2L_12_19735001	chr2L_19735001	RAL-181
395	chr2L	19762808	19762834	chr2L	19763050	19763076	pogo	9	239	5.0	3.0	4.0	1.8	268	chr2L	19762808	5` UTR	fbp -	chr2L	19762942	intron	fbp -	chr2L	19763076	intron	fbp -	chr2L_9_19760001	chr2L_19760001	RAL-181
400	chr2L	20005886	20005900	chr2L	20010947	20010976	flea	6	5073	3.5	1.0	2.2	1.9	5090	chr2L	20005886	intron	CG43861 -	chr2L	20008431	intron	CG43861 -	chr2L	20010976	intron	CG43861 -	chr2L_6_20005001	chr2L_20005001	RAL-181
402	chr2L	20272121	20272145	chr2L	20282823	20282853	copia	8	10707	4.5	3.0	3.8	1.7	10732	chr2L	20272121	intergenic	not near genes	chr2L	20277487	intergenic	not near genes	chr2L	20282853	intergenic	not near genes	chr2L_8_20275001	chr2L_20275001	RAL-181
409	chr2L	20568662	20568686	chr2L	20569052	20569076	X-element	9	390	3.5	3.5	3.5	2.0	414	chr2L	20568662	intron	CR45347 +	chr2L	20568869	intron	CR45347 +	chr2L	20569076	intron	CR45347 +	chr2L_9_20565001	chr2L_20565001	RAL-181
410	chr2L	20576217	20576240	chr2L	20583685	20583709	blood	7	7466	7.0	7.0	7.0	0.9	7492	chr2L	20576217	intergenic	CR45347 +	chr2L	20579963	intergenic	not near genes	chr2L	20583709	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-181
414	chr2L	20639511	20639532	chr2L	20639787	20639808	INE-1	9	274	2.5	8.5	5.5	1.4	297	chr2L	20639511	intergenic	not near genes	chr2L	20639660	intergenic	CG31680 +	chr2L	20639808	intergenic	CG31680 +	chr2L_9_20635001	chr2L_20635001	RAL-181
419	chr2L	20835810	20835833	chr2L	20836527	20836550	Quasimodo	6	714	2.5	2.5	2.5	1.7	740	chr2L	20835810	5` UTR	Oseg5 -	chr2L	20836180	intergenic	Oseg5 -,Spn38F -	chr2L	20836550	intergenic	Spn38F -	chr2L_6_20835001	chr2L_20835001	RAL-181
422	chr2L	20891535	20891546	chr2L	20896636	20896645	jockey	5	5099	2.0	4.0	3.0	1.2	5110	chr2L	20891535	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896645	intron,intron	CG43739 -,sky -	chr2L_5_20890001	chr2L_20890001	RAL-181
423	chr2L	20901473	20901478	chr2L	20902627	20902642	1360	6	1161	6.0	6.5	6.2	0.8	1169	chr2L	20901473	intron,intron	CG43739 -,sky -	chr2L	20902058	intron,intron	CG43739 -,sky -	chr2L	20902642	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	RAL-181
424	chr2L	20901479	20901488	chr2L	20902625	20902652	1360	4	1160	5.5	6.5	6.0	0.6	1173	chr2L	20901479	intron,intron	CG43739 -,sky -	chr2L	20902066	intron,intron	CG43739 -,sky -	chr2L	20902652	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-181
425	chr2L	20976654	20976669	chr2L	20981457	20981480	X-element	7	4812	5.0	3.5	4.2	1.3	4826	chr2L	20976654	intron	CG42238 -	chr2L	20979067	intron	CG42238 -	chr2L	20981480	intron	CG42238 -	chr2L_7_20975001	chr2L_20975001	RAL-181
426	chr2L	21020275	21020306	chr2L	21023948	21023983	NOF	12	3675	5.5	2.5	4.0	2.4	3708	chr2L	21020275	intron	CG42238 -	chr2L	21022129	intron	CG42238 -	chr2L	21023983	intron	CG42238 -	chr2L_12_21020001	chr2L_21020001	RAL-181
427	chr2L	21041135	21041168	chr2L	21049395	21049427	Tirant	14	8259	3.0	6.5	4.8	2.4	8292	chr2L	21041135	intron	CG42238 -	chr2L	21045281	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_14_21045001	chr2L_21045001	RAL-181
430	chr2L	21597036	21597057	chr2L	21604778	21604801	roo	7	7743	4.0	5.0	4.5	1.3	7765	chr2L	21597036	intergenic	not near genes	chr2L	21600918	intergenic	not near genes	chr2L	21604801	intergenic	not near genes	chr2L_7_21600001	chr2L_21600001	RAL-181
435	chr2L	21981684	21981716	chr2L	21990849	21990881	roo	27	9162	2.5	6.5	4.5	4.9	9197	chr2L	21981684	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990881	exon	CG2528 -	chr2L_27_21985001	chr2L_21985001	RAL-181
438	chr2L	22258615	22258637	chr2L	22260739	22260760	G6	6	2120	5.0	3.0	4.0	1.2	2145	chr2L	22258615	intergenic	Tif-IA +	chr2L	22259688	intergenic	not near genes	chr2L	22260760	intergenic	not near genes	chr2L_6_22255001	chr2L_22255001	RAL-181
441	chr2L	22490489	22490512	chr2L	22497637	22497645	springer	4	7138	0.0	0.0	0.0	4.0	7156	chr2L	22490489	intergenic	not near genes	chr2L	22494067	intergenic	not near genes	chr2L	22497645	intergenic	not near genes	chr2L_4_22490001	chr2L_22490001	RAL-181
442	chr2L	22490515	22490528	chr2L	22497636	22497645	springer	10	7126	0.0	0.0	0.0	10.0	7130	chr2L	22490515	intergenic	not near genes	chr2L	22494080	intergenic	not near genes	chr2L	22497645	intergenic	not near genes	chr2L_10_22490001	chr2L_22490001	RAL-181
447	chr2L	22679805	22679830	chr2L	22684574	22684588	F-element	10	4770	3.5	6.5	5.0	1.7	4783	chr2L	22679805	intron	CG40006 -	chr2L	22682196	intron	CG40006 -	chr2L	22684588	intron	CG40006 -	chr2L_10_22680001	chr2L_22680001	RAL-181
449	chr2R	469962	469977	chr2R	473203	473213	F-element	4	3240	2.0	1.0	1.5	1.6	3251	chr2R	469962	intergenic	not near genes	chr2R	471588	intergenic	not near genes	chr2R	473213	intergenic	not near genes	chr2R_4_470001	chr2R_470001	RAL-181
450	chr2R	529331	529357	chr2R	537953	537982	Max-element	8	8622	1.0	4.0	2.5	2.3	8651	chr2R	529331	intron	CG40378 +	chr2R	533656	intron	CG40378 +	chr2R	537982	intron	CG40378 +	chr2R_8_530001	chr2R_530001	RAL-181
451	chr2R	552767	552787	chr2R	553969	553998	1360	10	1207	3.0	2.5	2.8	2.6	1231	chr2R	552767	intron	CG40378 +	chr2R	553382	intron	CG40378 +	chr2R	553998	intron	CG40378 +	chr2R_10_550001	chr2R_550001	RAL-181
452	chr2R	1082370	1082384	chr2R	1087127	1087160	Doc	11	4762	7.5	4.5	6.0	1.6	4790	chr2R	1082370	intron	rl +	chr2R	1084765	intron	rl +	chr2R	1087160	intron	rl +	chr2R_11_1080001	chr2R_1080001	RAL-181
455	chr2R	2498984	2499018	chr2R	2508131	2508165	roo	12	9145	3.0	3.5	3.2	2.9	9181	chr2R	2498984	intron	MFS17 -	chr2R	2503574	intron	MFS17 -	chr2R	2508165	intron	MFS17 -	chr2R_12_2500001	chr2R_2500001	RAL-181
458	chr2R	3144091	3144109	chr2R	3393369	3393379	Doc	8	249275	18.5	7.0	12.8	0.6	249288	chr2R	3144091	intron	CG42596 +	chr2R	3268735	intergenic	not near genes	chr2R	3393379	intergenic	not near genes	chr2R_8_3265001	chr2R_3265001	RAL-181
465	chr2R	4622951	4622988	chr2R	4624110	4624130	1360	20	1157	5.5	4.0	4.8	3.4	1179	chr2R	4622951	intergenic	CR44101 -	chr2R	4623540	intergenic	not near genes	chr2R	4624130	intergenic	not near genes	chr2R_20_4620001	chr2R_4620001	RAL-181
466	chr2R	4624642	4624674	chr2R	4626547	4626579	Bica	12	1903	8.0	4.5	6.2	1.7	1937	chr2R	4624642	intergenic	not near genes	chr2R	4625610	intergenic	not near genes	chr2R	4626579	intergenic	not near genes	chr2R_12_4625001	chr2R_4625001	RAL-181
468	chr2R	4838876	4838888	chr2R	4840399	4840405	transib2	6	1522	14.0	9.0	11.5	0.5	1529	chr2R	4838876	intergenic	not near genes	chr2R	4839640	intergenic	not near genes	chr2R	4840405	intergenic	not near genes	chr2R_6_4835001	chr2R_4835001	RAL-181
470	chr2R	5079983	5079993	chr2R	5080588	5080616	diver2	6	618	0.5	4.5	2.5	1.7	633	chr2R	5079983	intergenic	not near genes	chr2R	5080300	intergenic	not near genes	chr2R	5080616	intergenic	not near genes	chr2R_6_5080001	chr2R_5080001	RAL-181
481	chr2R	5543202	5543223	chr2R	5547286	5547303	invader1	7	4081	0.0	4.0	2.0	2.3	4101	chr2R	5543202	intron	CG30438 +	chr2R	5545252	intron	CG30438 +	chr2R	5547303	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	RAL-181
486	chr2R	5869280	5869309	chr2R	5874356	5874368	flea	16	5073	2.5	9.5	6.0	2.3	5088	chr2R	5869280	intergenic	not near genes	chr2R	5871824	intergenic	not near genes	chr2R	5874368	intergenic	not near genes	chr2R_16_5870001	chr2R_5870001	RAL-181
489	chr2R	5902178	5902185	chr2R	5909717	5909744	17.6	4	7552	1.0	1.0	1.0	2.0	7566	chr2R	5902178	intron	CG43366 +	chr2R	5905961	intron	CG43366 +	chr2R	5909744	intron	CG43366 +	chr2R_4_5905001	chr2R_5905001	RAL-181
491	chr2R	6096725	6096750	chr2R	6101912	6101923	BS	10	5181	5.0	9.5	7.2	1.2	5198	chr2R	6096725	intron	EcR -	chr2R	6099324	intron	EcR -	chr2R	6101923	intron	EcR -	chr2R_10_6095001	chr2R_6095001	RAL-181
495	chr2R	6494538	6494555	chr2R	6499287	6499315	F-element	8	4760	1.0	1.0	1.0	4.0	4777	chr2R	6494538	intergenic	not near genes	chr2R	6496926	intergenic	not near genes	chr2R	6499315	intergenic	not near genes	chr2R_8_6495001	chr2R_6495001	RAL-181
498	chr2R	6664187	6664210	chr2R	6665988	6666011	S-element	4	1801	2.0	0.5	1.2	1.8	1824	chr2R	6664187	intron,3` UTR	Adf1 +,CR45128 -	chr2R	6665099	intron	Adf1 +	chr2R	6666011	intron	Adf1 +	chr2R_4_6665001	chr2R_6665001	RAL-181
506	chr2R	7235818	7235853	chr2R	7240910	7240936	jockey	21	5089	3.0	2.5	2.8	5.5	5118	chr2R	7235818	intergenic	not near genes	chr2R	7238377	intergenic	not near genes	chr2R	7240936	intergenic	not near genes	chr2R_21_7235001	chr2R_7235001	RAL-181
511	chr2R	7434893	7434921	chr2R	7439194	7439218	Juan	9	4299	7.0	5.0	6.0	1.3	4325	chr2R	7434893	intergenic	so +	chr2R	7437056	intergenic	not near genes	chr2R	7439218	intergenic	not near genes	chr2R_9_7435001	chr2R_7435001	RAL-181
512	chr2R	7608411	7608438	chr2R	7613612	7613632	I-element	12	5199	2.5	5.5	4.0	2.4	5221	chr2R	7608411	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613632	intron	CG1358 -	chr2R_12_7610001	chr2R_7610001	RAL-181
520	chr2R	7815681	7815702	chr2R	7822139	7822169	Burdock	11	6466	4.0	2.5	3.2	2.6	6488	chr2R	7815681	intergenic	CG1882 +	chr2R	7818925	intergenic	not near genes	chr2R	7822169	3` UTR	cathD -	chr2R_11_7815001	chr2R_7815001	RAL-181
521	chr2R	7869193	7869220	chr2R	7873979	7873982	Doc	8	4779	5.0	10.0	7.5	0.9	4789	chr2R	7869193	intron	Dgk -	chr2R	7871588	intron	Dgk -	chr2R	7873982	intron	Dgk -	chr2R_8_7870001	chr2R_7870001	RAL-181
530	chr2R	8160936	8160953	chr2R	8161026	8161043	1360	7	90	7.0	18.5	12.8	0.5	107	chr2R	8160936	intron	CG8708 -	chr2R	8160990	intron	CG8708 -	chr2R	8161043	intron	CG8708 -	chr2R_7_8160001	chr2R_8160001	RAL-181
536	chr2R	8330860	8330895	chr2R	8331346	8331372	roo	8	483	5.5	4.0	4.8	1.4	512	chr2R	8330860	intron	pdm3 +	chr2R	8331116	intron	pdm3 +	chr2R	8331372	intron	pdm3 +	chr2R_8_8330001	chr2R_8330001	RAL-181
538	chr2R	8398224	8398244	chr2R	8403005	8403016	Doc	7	4778	8.0	7.5	7.8	0.8	4792	chr2R	8398224	intron	CG2121 -	chr2R	8400620	intron	CG2121 -	chr2R	8403016	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-181
546	chr2R	8722762	8722793	chr2R	8723003	8723033	pogo	19	238	5.0	5.5	5.2	3.1	271	chr2R	8722762	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723033	intron	CG14767 -	chr2R_19_8720001	chr2R_8720001	RAL-181
556	chr2R	9212693	9212715	chr2R	9213179	9213201	roo	10	483	5.5	8.5	7.0	1.2	508	chr2R	9212693	intergenic	CR45309 +	chr2R	9212947	intergenic	CR45309 +	chr2R	9213201	5` UTR	CR45309 +	chr2R_10_9210001	chr2R_9210001	RAL-181
564	chr2R	9726617	9726646	chr2R	9734168	9734196	17.6	5	7550	0.5	1.5	1.0	2.5	7579	chr2R	9726617	intron	sqa -	chr2R	9730406	intron	sqa -	chr2R	9734196	intron	sqa -	chr2R_5_9730001	chr2R_9730001	RAL-181
567	chr2R	9871043	9871072	chr2R	9871528	9871555	roo	10	485	2.5	8.0	5.2	1.6	512	chr2R	9871043	intron	cbx -	chr2R	9871299	intron	cbx -	chr2R	9871555	intron,5` UTR	cbx -,CG18446 +	chr2R_10_9870001	chr2R_9870001	RAL-181
569	chr2R	9945434	9945465	chr2R	9945630	9945661	BS	16	192	9.0	5.0	7.0	2.0	227	chr2R	9945434	intron	Mef2 -	chr2R	9945548	intron	Mef2 -	chr2R	9945661	intron	Mef2 -	chr2R_16_9945001	chr2R_9945001	RAL-181
571	chr2R	10005847	10005881	chr2R	10007012	10007038	1360	17	1161	8.0	7.5	7.8	1.9	1191	chr2R	10005847	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007038	intron	Pka-R2 -	chr2R_17_10005001	chr2R_10005001	RAL-181
589	chr2R	10585575	10585589	chr2R	10594145	10594172	Tirant	14	8581	4.5	5.0	4.8	2.4	8597	chr2R	10585575	intron	psq +	chr2R	10589874	intron	psq +	chr2R	10594172	intron	psq +	chr2R_14_10585001	chr2R_10585001	RAL-181
596	chr2R	10948026	10948040	chr2R	10955577	10955589	17.6	8	7550	1.0	8.0	4.5	1.5	7563	chr2R	10948026	intergenic	not near genes	chr2R	10951808	intergenic	not near genes	chr2R	10955589	intergenic	not near genes	chr2R_8_10950001	chr2R_10950001	RAL-181
597	chr2R	10948041	10948062	chr2R	10955576	10955613	17.6	11	7546	0.5	6.5	3.5	2.4	7572	chr2R	10948041	intergenic	not near genes	chr2R	10951827	intergenic	not near genes	chr2R	10955613	intergenic	not near genes	chr2R_11_10950001	chr2R_10950001	RAL-181
600	chr2R	11009812	11009848	chr2R	11018986	11019021	roo	15	9171	2.5	3.0	2.8	3.9	9209	chr2R	11009812	intron	luna -	chr2R	11014416	intron	luna -	chr2R	11019021	intron	luna -	chr2R_15_11010001	chr2R_11010001	RAL-181
601	chr2R	11019884	11019898	chr2R	11024950	11024958	jockey	8	5065	10.0	4.0	7.0	1.0	5074	chr2R	11019884	intron	luna -	chr2R	11022421	intron	luna -	chr2R	11024958	intron	luna -	chr2R_8_11020001	chr2R_11020001	RAL-181
602	chr2R	11019905	11019912	chr2R	11024947	11024975	jockey	4	5059	4.5	4.0	4.2	0.8	5070	chr2R	11019905	intron	luna -	chr2R	11022440	intron	luna -	chr2R	11024975	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-181
606	chr2R	11207814	11207846	chr2R	11208006	11208034	BS	14	192	5.0	3.0	4.0	2.8	220	chr2R	11207814	intron	shn +	chr2R	11207924	intron	shn +	chr2R	11208034	intron	shn +	chr2R_14_11205001	chr2R_11205001	RAL-181
611	chr2R	11297623	11297647	chr2R	11301938	11301966	flea	8	4314	8.5	5.5	7.0	1.0	4343	chr2R	11297623	intergenic	CG42336 -	chr2R	11299794	intergenic	not near genes	chr2R	11301966	5` UTR	CG7741 +	chr2R_8_11295001	chr2R_11295001	RAL-181
613	chr2R	11415533	11415543	chr2R	11418673	11418692	opus	4	3147	6.0	9.0	7.5	0.5	3159	chr2R	11415533	intron	Drip -	chr2R	11417112	intron	Drip -	chr2R	11418692	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-181
616	chr2R	11472648	11472680	chr2R	11473845	11473877	pogo	18	1195	6.0	4.0	5.0	3.0	1229	chr2R	11472648	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473877	intergenic	not near genes	chr2R_18_11470001	chr2R_11470001	RAL-181
631	chr2R	12481150	12481152	chr2R	12482950	12482952	roo	4	1802	3.0	7.5	5.2	0.6	1802	chr2R	12481150	exon	Dh44-R2 +	chr2R	12482051	intron	Dh44-R2 +	chr2R	12482952	intron	Dh44-R2 +	chr2R_4_12480001	chr2R_12480001	RAL-181
633	chr2R	12501690	12501721	chr2R	12503851	12503879	Rt1c	5	2160	6.5	5.0	5.8	0.7	2189	chr2R	12501690	intron	fdl -	chr2R	12502784	intron	fdl -	chr2R	12503879	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-181
642	chr2R	12789298	12789327	chr2R	12797658	12797672	roo	14	8359	3.0	5.0	4.0	2.8	8374	chr2R	12789298	intron,3` UTR	sca +,CR45137 -	chr2R	12793485	intron,intron	sca +,CR45137 -	chr2R	12797672	intron,3` UTR	sca +,CR45137 -	chr2R_14_12790001	chr2R_12790001	RAL-181
644	chr2R	12819475	12819479	chr2R	12824528	12824549	jockey	5	5064	3.0	6.5	4.8	0.9	5074	chr2R	12819475	intergenic	not near genes	chr2R	12822012	intergenic	not near genes	chr2R	12824549	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-181
647	chr2R	13136840	13136855	chr2R	13141638	13141653	Doc	12	4797	7.5	9.0	8.2	1.3	4813	chr2R	13136840	exon	Cap-G +	chr2R	13139246	intron	Cap-G +	chr2R	13141653	intron	Cap-G +	chr2R_12_13135001	chr2R_13135001	RAL-181
648	chr2R	13136857	13136869	chr2R	13141632	13141666	Doc	10	4790	5.0	8.5	6.8	1.3	4809	chr2R	13136857	exon	Cap-G +	chr2R	13139262	intron	Cap-G +	chr2R	13141666	intron	Cap-G +	chr2R_10_13135001	chr2R_13135001	RAL-181
654	chr2R	13580510	13580515	chr2R	13580860	13580865	jockey	4	349	0.5	9.5	5.0	0.7	355	chr2R	13580510	3` UTR	CG6191 -	chr2R	13580688	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580865	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-181
660	chr2R	13728132	13728162	chr2R	13735789	13735805	opus	5	7653	1.5	0.0	0.8	2.8	7673	chr2R	13728132	intron	fas +	chr2R	13731968	intron	fas +	chr2R	13735805	intron	fas +	chr2R_5_13730001	chr2R_13730001	RAL-181
664	chr2R	13905601	13905635	chr2R	13907582	13907602	Rt1a	15	1976	4.0	4.5	4.2	2.9	2001	chr2R	13905601	intron	shot -	chr2R	13906602	intron	shot -	chr2R	13907602	intron	shot -	chr2R_15_13905001	chr2R_13905001	RAL-181
670	chr2R	14394231	14394251	chr2R	14399020	14399022	Doc	7	4786	5.0	2.5	3.8	1.5	4791	chr2R	14394231	intergenic	not near genes	chr2R	14396626	intergenic	not near genes	chr2R	14399022	intergenic	not near genes	chr2R_7_14395001	chr2R_14395001	RAL-181
671	chr2R	14467307	14467324	chr2R	14476465	14476481	roo	10	9157	5.5	7.5	6.5	1.3	9174	chr2R	14467307	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476481	5` UTR	CR44462 +	chr2R_10_14470001	chr2R_14470001	RAL-181
672	chr2R	14497392	14497412	chr2R	14498556	14498578	1360	5	1164	2.0	3.0	2.5	1.4	1186	chr2R	14497392	3` UTR	Cpsf160 -	chr2R	14497985	intron	Cpsf160 -	chr2R	14498578	3` UTR	Cpsf160 -	chr2R_5_14495001	chr2R_14495001	RAL-181
683	chr2R	14889208	14889236	chr2R	14897816	14897844	Max-element	4	8608	1.5	0.0	0.8	2.2	8636	chr2R	14889208	intergenic	Cyp6a8 -	chr2R	14893526	intergenic	not near genes	chr2R	14897844	intergenic	not near genes	chr2R_4_14890001	chr2R_14890001	RAL-181
690	chr2R	15004728	15004756	chr2R	15005054	15005085	jockey	8	326	2.5	4.5	3.5	1.8	357	chr2R	15004728	intergenic	not near genes	chr2R	15004906	intergenic	not near genes	chr2R	15005085	intergenic	not near genes	chr2R_8_15000001	chr2R_15000001	RAL-181
691	chr2R	15015458	15015490	chr2R	15022878	15022914	mdg1	8	7423	2.0	2.5	2.2	2.5	7456	chr2R	15015458	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022914	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RAL-181
693	chr2R	15119320	15119351	chr2R	15127797	15127805	Tirant	12	8475	3.0	4.0	3.5	2.7	8485	chr2R	15119320	intron	chn +	chr2R	15123562	intron	chn +	chr2R	15127805	intron	chn +	chr2R_12_15120001	chr2R_15120001	RAL-181
718	chr2R	17147242	17147256	chr2R	17152273	17152287	jockey	7	5031	5.5	7.5	6.5	0.9	5045	chr2R	17147242	intergenic	not near genes	chr2R	17149764	intergenic	not near genes	chr2R	17152287	intergenic	not near genes	chr2R_7_17145001	chr2R_17145001	RAL-181
719	chr2R	17147260	17147269	chr2R	17152271	17152300	jockey	7	5027	3.5	7.0	5.2	1.1	5040	chr2R	17147260	intergenic	not near genes	chr2R	17149780	intergenic	not near genes	chr2R	17152300	intergenic	not near genes	chr2R_7_17145001	chr2R_17145001	RAL-181
721	chr2R	17176352	17176389	chr2R	17182542	17182579	diver	10	6189	3.0	2.5	2.8	2.6	6227	chr2R	17176352	intergenic	not near genes	chr2R	17179466	intergenic	not near genes	chr2R	17182579	intergenic	not near genes	chr2R_10_17175001	chr2R_17175001	RAL-181
722	chr2R	17236508	17236542	chr2R	17241711	17241741	copia	16	5203	4.0	6.5	5.2	2.6	5233	chr2R	17236508	intron	mbl +	chr2R	17239124	intron	mbl +	chr2R	17241741	intron	mbl +	chr2R_16_17235001	chr2R_17235001	RAL-181
727	chr2R	17784029	17784057	chr2R	17784265	17784298	pogo	15	237	6.5	7.5	7.0	1.9	269	chr2R	17784029	intergenic	mir-31a -	chr2R	17784164	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_15_17780001	chr2R_17780001	RAL-181
732	chr2R	18358387	18358421	chr2R	18372599	18372633	roo	20	14210	4.5	0.0	2.2	6.2	14246	chr2R	18358387	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372633	intergenic	not near genes	chr2R_20_18365001	chr2R_18365001	RAL-181
737	chr2R	18575817	18575830	chr2R	18581983	18582018	3S18	6	6175	6.0	8.0	7.0	0.8	6201	chr2R	18575817	intron	GEFmeso -	chr2R	18578918	intron	GEFmeso -	chr2R	18582018	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	RAL-181
738	chr2R	18590866	18590898	chr2R	18600017	18600046	roo	13	9150	5.5	3.5	4.5	2.4	9180	chr2R	18590866	intron	GEFmeso -	chr2R	18595456	intron	GEFmeso -	chr2R	18600046	intron	GEFmeso -	chr2R_13_18595001	chr2R_18595001	RAL-181
760	chr2R	19776594	19776629	chr2R	19779917	19779952	jockey	16	3320	6.5	3.5	5.0	2.7	3358	chr2R	19776594	intergenic	not near genes	chr2R	19778273	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_16_19775001	chr2R_19775001	RAL-181
762	chr2R	19957443	19957464	chr2R	19962630	19962652	copia	6	5193	3.5	3.5	3.5	1.3	5209	chr2R	19957443	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962652	intergenic	not near genes	chr2R_6_19960001	chr2R_19960001	RAL-181
770	chr2R	20739458	20739478	chr2R	20744226	20744246	F-element	8	4767	5.5	8.5	7.0	1.0	4788	chr2R	20739458	intron	dpr +	chr2R	20741852	intron	dpr +	chr2R	20744246	intron	dpr +	chr2R_8_20740001	chr2R_20740001	RAL-181
772	chr2R	20783311	20783333	chr2R	20788083	20788105	F-element	6	4771	1.0	6.5	3.8	1.2	4794	chr2R	20783311	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_6_20785001	chr2R_20785001	RAL-181
775	chr2R	21151129	21151145	chr2R	21153762	21153778	opus	7	2631	4.5	8.0	6.2	1.0	2649	chr2R	21151129	intron	CG30389 -	chr2R	21152454	intron	CG30389 -	chr2R	21153778	intron	CG30389 -	chr2R_7_21150001	chr2R_21150001	RAL-181
784	chr2R	21753083	21753112	chr2R	21753568	21753587	roo	19	481	9.0	4.5	6.8	2.4	504	chr2R	21753083	intergenic	not near genes	chr2R	21753335	intergenic	not near genes	chr2R	21753587	intergenic	not near genes	chr2R_19_21750001	chr2R_21750001	RAL-181
785	chr2R	21809526	21809554	chr2R	21817765	21817794	roo	13	8238	3.5	5.5	4.5	2.4	8268	chr2R	21809526	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817794	intergenic	not near genes	chr2R_13_21810001	chr2R_21810001	RAL-181
798	chr2R	22349701	22349725	chr2R	22351478	22351507	jockey	6	1782	3.5	7.5	5.5	0.9	1806	chr2R	22349701	intron	Liprin-gamma -	chr2R	22350604	intron	Liprin-gamma -	chr2R	22351507	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-181
799	chr2R	22360384	22360396	chr2R	22360814	22360829	jockey	6	432	8.0	4.5	6.2	0.8	445	chr2R	22360384	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360829	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	RAL-181
800	chr2R	22360397	22360412	chr2R	22360809	22360827	jockey	4	417	4.5	4.0	4.2	0.8	430	chr2R	22360397	intron	Liprin-gamma -	chr2R	22360612	intron	Liprin-gamma -	chr2R	22360827	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-181
808	chr2R	22774968	22775001	chr2R	22775379	22775404	jockey	13	417	8.5	5.0	6.8	1.7	436	chr2R	22774968	intron	CG42260 -	chr2R	22775186	intron	CG42260 -	chr2R	22775404	intron	CG42260 -	chr2R_13_22775001	chr2R_22775001	RAL-181
828	chr2R	23529578	23529593	chr2R	23537153	23537167	412	4	7575	9.0	7.0	8.0	0.4	7589	chr2R	23529578	intron	bw -	chr2R	23533372	intron	bw -	chr2R	23537167	exon	bw -	chr2R_4_23530001	chr2R_23530001	RAL-181
829	chr2R	23529595	23529606	chr2R	23537148	23537157	412	7	7559	4.5	4.5	4.5	1.3	7562	chr2R	23529595	exon	bw -	chr2R	23533376	intron	bw -	chr2R	23537157	exon	bw -	chr2R_7_23530001	chr2R_23530001	RAL-181
836	chr2R	24177236	24177263	chr2R	24184721	24184744	412	8	7484	4.0	3.0	3.5	1.8	7508	chr2R	24177236	3` UTR	Nop60B +	chr2R	24180990	intron	Nop60B +	chr2R	24184744	3` UTR	Nop60B +	chr2R_8_24180001	chr2R_24180001	RAL-181
840	chr2R	24353442	24353443	chr2R	24361804	24361805	roo	4	8362	2.5	9.5	6.0	0.6	8363	chr2R	24353442	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361805	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-181
841	chr2R	24353445	24353460	chr2R	24361803	24361821	roo	6	8360	1.0	9.5	5.2	1.0	8376	chr2R	24353445	intron,intron	bs +,CR44811 -	chr2R	24357633	intron,intron	bs +,CR44811 -	chr2R	24361821	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-181
848	chr2R	24647594	24647618	chr2R	24655144	24655175	412	10	7554	8.0	3.0	5.5	1.5	7581	chr2R	24647594	intergenic	not near genes	chr2R	24651384	intergenic	not near genes	chr2R	24655175	intergenic	not near genes	chr2R_10_24650001	chr2R_24650001	RAL-181
850	chr2R	24727882	24727917	chr2R	24735390	24735424	mdg1	25	7506	3.5	7.0	5.2	4.0	7542	chr2R	24727882	intron	Mid1 -	chr2R	24731653	intron	Mid1 -	chr2R	24735424	intron	Mid1 -	chr2R_25_24730001	chr2R_24730001	RAL-181
851	chr2R	24763612	24763642	chr2R	24765588	24765590	G2	12	1970	5.5	3.0	4.2	2.3	1978	chr2R	24763612	exon	CG3894 +	chr2R	24764601	intron	CG3894 +	chr2R	24765590	exon	CG3894 +	chr2R_12_24760001	chr2R_24760001	RAL-181
856	chr2R	25141654	25141683	chr2R	25159344	25159373	roo	4	17690	4.5	4.0	4.2	0.8	17719	chr2R	25141654	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159373	intergenic	not near genes	chr2R_4_25150001	chr2R_25150001	RAL-181
862	chr3L	110214	110244	chr3L	119381	119399	roo	10	9166	2.5	2.0	2.2	3.1	9185	chr3L	110214	intergenic	not near genes	chr3L	114806	intergenic	not near genes	chr3L	119399	intergenic	not near genes	chr3L_10_110001	chr3L_110001	RAL-181
863	chr3L	402700	402718	chr3L	409742	409770	297	7	7049	5.5	10.5	8.0	0.8	7070	chr3L	402700	intergenic	not near genes	chr3L	406235	intergenic	not near genes	chr3L	409770	intergenic	not near genes	chr3L_7_405001	chr3L_405001	RAL-181
871	chr3L	858006	858031	chr3L	866478	866494	Tirant	11	8475	6.0	5.0	5.5	1.7	8488	chr3L	858006	intergenic	not near genes	chr3L	862250	intergenic	not near genes	chr3L	866494	intergenic	CG12502 +	chr3L_11_860001	chr3L_860001	RAL-181
875	chr3L	925181	925210	chr3L	932600	932634	mdg1	7	7423	3.0	0.0	1.5	2.8	7453	chr3L	925181	intron	Glut1 +	chr3L	928908	intron	Glut1 +	chr3L	932634	intron	Glut1 +	chr3L_7_925001	chr3L_925001	RAL-181
877	chr3L	939772	939784	chr3L	940893	940905	jockey	11	1120	6.5	4.0	5.2	1.8	1133	chr3L	939772	intron	Glut1 +	chr3L	940338	intron	Glut1 +	chr3L	940905	intron	Glut1 +	chr3L_11_940001	chr3L_940001	RAL-181
878	chr3L	939786	939807	chr3L	940888	940921	jockey	6	1113	3.0	3.5	3.2	1.4	1135	chr3L	939786	intron	Glut1 +	chr3L	940354	intron	Glut1 +	chr3L	940921	intron	Glut1 +	chr3L_6_940001	chr3L_940001	RAL-181
883	chr3L	1154128	1154161	chr3L	1163278	1163308	roo	7	9149	3.5	3.5	3.5	1.6	9180	chr3L	1154128	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163308	intron	bab2 -	chr3L_7_1155001	chr3L_1155001	RAL-181
885	chr3L	1219599	1219621	chr3L	1227329	1227354	412	13	7729	4.5	6.0	5.2	2.1	7755	chr3L	1219599	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227354	intron	mwh +	chr3L_13_1220001	chr3L_1220001	RAL-181
892	chr3L	1505996	1506010	chr3L	1513593	1513607	17.6	4	7596	9.5	3.0	6.2	0.6	7611	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509802	intron,intron	Psa +,cue -	chr3L	1513607	intron,intron	Psa +,cue -	chr3L_4_1505001	chr3L_1505001	RAL-181
893	chr3L	1506013	1506033	chr3L	1513592	1513627	17.6	12	7592	5.0	3.0	4.0	2.4	7614	chr3L	1506013	intron,intron	Psa +,cue -	chr3L	1509820	intron,intron	Psa +,cue -	chr3L	1513627	intron,intron	Psa +,cue -	chr3L_12_1505001	chr3L_1505001	RAL-181
905	chr3L	2447518	2447536	chr3L	2456661	2456691	roo	5	9151	4.0	7.0	5.5	0.8	9173	chr3L	2447518	intron	CG45186 +	chr3L	2452104	intron	CG45186 +	chr3L	2456691	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	RAL-181
920	chr3L	2927837	2927870	chr3L	2936114	2936147	Tirant	11	8274	0.5	2.0	1.2	5.0	8310	chr3L	2927837	intron	Shab +	chr3L	2931992	intron	Shab +	chr3L	2936147	intron	Shab +	chr3L_11_2930001	chr3L_2930001	RAL-181
922	chr3L	3061287	3061317	chr3L	3069870	3069881	Tirant	7	8573	3.0	4.0	3.5	1.6	8594	chr3L	3061287	intron	CG32486 -	chr3L	3065584	intron	CG32486 -	chr3L	3069881	intron	CG32486 -	chr3L_7_3065001	chr3L_3065001	RAL-181
924	chr3L	3281440	3281477	chr3L	3281936	3281972	Doc	24	491	6.0	10.0	8.0	2.7	532	chr3L	3281440	intron	CG12017 +	chr3L	3281706	intron	CG12017 +	chr3L	3281972	intron	CG12017 +	chr3L_24_3280001	chr3L_3280001	RAL-181
925	chr3L	3475075	3475110	chr3L	3475519	3475553	jockey	15	441	1.5	4.5	3.0	3.8	478	chr3L	3475075	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_15_3475001	chr3L_3475001	RAL-181
934	chr3L	3601296	3601326	chr3L	3606607	3606635	copia	21	5309	3.0	3.0	3.0	5.2	5339	chr3L	3601296	intron	Eip63E +	chr3L	3603966	intron	Eip63E +	chr3L	3606635	intron	Eip63E +	chr3L_21_3600001	chr3L_3600001	RAL-181
950	chr3L	4901132	4901159	chr3L	4907319	4907340	diver	4	6186	3.0	4.0	3.5	0.9	6208	chr3L	4901132	intergenic	CG13704 +	chr3L	4904236	intergenic	not near genes	chr3L	4907340	intergenic	not near genes	chr3L_4_4900001	chr3L_4900001	RAL-181
954	chr3L	5034158	5034184	chr3L	5043310	5043336	roo	9	9150	4.5	2.0	3.2	2.1	9178	chr3L	5034158	intron	Con -	chr3L	5038747	intron	Con -	chr3L	5043336	intron	Con -	chr3L_9_5035001	chr3L_5035001	RAL-181
955	chr3L	5045458	5045484	chr3L	5050237	5050250	Doc	5	4775	2.5	2.5	2.5	1.4	4792	chr3L	5045458	intron	Con -	chr3L	5047854	intron	Con -	chr3L	5050250	intron	Con -	chr3L_5_5045001	chr3L_5045001	RAL-181
961	chr3L	5458065	5458084	chr3L	5466665	5466667	Max-element	5	8597	6.0	5.5	5.8	0.7	8602	chr3L	5458065	intergenic	not near genes	chr3L	5462366	intergenic	not near genes	chr3L	5466667	intergenic	not near genes	chr3L_5_5460001	chr3L_5460001	RAL-181
966	chr3L	5537725	5537750	chr3L	5538063	5538080	jockey	6	339	2.0	2.5	2.2	1.9	355	chr3L	5537725	intergenic	not near genes	chr3L	5537902	intergenic	not near genes	chr3L	5538080	intergenic	CG10625 -	chr3L_6_5535001	chr3L_5535001	RAL-181
968	chr3L	5910034	5910057	chr3L	5910275	5910298	pogo	9	238	4.0	3.0	3.5	2.0	264	chr3L	5910034	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910298	intron	CG13288 +	chr3L_9_5910001	chr3L_5910001	RAL-181
969	chr3L	5926316	5926349	chr3L	5926506	5926539	BS	11	186	6.0	6.0	6.0	1.6	223	chr3L	5926316	intron	Vap-33B +	chr3L	5926428	intron	Vap-33B +	chr3L	5926539	intron	Vap-33B +	chr3L_11_5925001	chr3L_5925001	RAL-181
972	chr3L	6220915	6220945	chr3L	6230067	6230097	roo	13	9150	7.5	8.0	7.8	1.5	9182	chr3L	6220915	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230097	intergenic	not near genes	chr3L_13_6225001	chr3L_6225001	RAL-181
973	chr3L	6335010	6335042	chr3L	6335481	6335513	297	7	469	3.5	6.0	4.8	1.2	503	chr3L	6335010	intron	CG13300 -	chr3L	6335262	intron	CG13300 -	chr3L	6335513	intron	CG13300 -	chr3L_7_6335001	chr3L_6335001	RAL-181
983	chr3L	6781123	6781149	chr3L	6783136	6783162	Doc	5	2013	2.5	3.0	2.8	1.3	2039	chr3L	6781123	intergenic	not near genes	chr3L	6782142	intergenic	not near genes	chr3L	6783162	intergenic	not near genes	chr3L_5_6780001	chr3L_6780001	RAL-181
984	chr3L	6855931	6855953	chr3L	6860716	6860738	Doc	6	4783	5.0	5.0	5.0	1.0	4807	chr3L	6855931	intergenic	not near genes	chr3L	6858334	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_6_6855001	chr3L_6855001	RAL-181
985	chr3L	6887523	6887550	chr3L	6895012	6895042	roo	13	7491	1.0	3.0	2.0	4.3	7519	chr3L	6887523	intergenic	not near genes	chr3L	6891282	intergenic	not near genes	chr3L	6895042	intergenic	not near genes	chr3L_13_6890001	chr3L_6890001	RAL-181
990	chr3L	7377335	7377344	chr3L	7380428	7380449	297	5	3100	2.5	7.5	5.0	0.8	3114	chr3L	7377335	intron	SMSr -	chr3L	7378892	intron	SMSr -	chr3L	7380449	intron	SMSr -	chr3L_5_7375001	chr3L_7375001	RAL-181
996	chr3L	7793710	7793743	chr3L	7800762	7800781	297	9	7050	2.0	5.0	3.5	2.0	7071	chr3L	7793710	intron	CG32369 -	chr3L	7797246	intron	CG32369 -	chr3L	7800781	intron	CG32369 -	chr3L_9_7795001	chr3L_7795001	RAL-181
998	chr3L	7886521	7886545	chr3L	7889039	7889063	Stalker4	13	2516	0.0	3.0	1.5	5.2	2542	chr3L	7886521	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889063	intron	CG32365 +	chr3L_13_7885001	chr3L_7885001	RAL-181
999	chr3L	7985362	7985398	chr3L	7987690	7987710	NOF	16	2326	2.5	4.0	3.2	3.8	2348	chr3L	7985362	intron	nmo +	chr3L	7986536	intron	nmo +	chr3L	7987710	intron	nmo +	chr3L_16_7985001	chr3L_7985001	RAL-181
1000	chr3L	8019702	8019728	chr3L	8024115	8024137	NOF	5	4411	2.0	0.0	1.0	2.5	4435	chr3L	8019702	intron	nmo +	chr3L	8021920	intron	nmo +	chr3L	8024137	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RAL-181
1010	chr3L	8791280	8791298	chr3L	8796699	8796704	I-element	7	5416	3.5	0.0	1.8	2.5	5424	chr3L	8791280	exon	Fhos +	chr3L	8793992	intron	Fhos +	chr3L	8796704	intron	Fhos +	chr3L_7_8790001	chr3L_8790001	RAL-181
1013	chr3L	9076939	9076942	chr3L	9084493	9084499	412	4	7558	8.5	6.0	7.2	0.5	7560	chr3L	9076939	exon	Tequila +	chr3L	9080719	intron	Tequila +	chr3L	9084499	exon	Tequila +	chr3L_4_9080001	chr3L_9080001	RAL-181
1014	chr3L	9076943	9076960	chr3L	9084490	9084511	412	7	7557	2.5	6.0	4.2	1.3	7568	chr3L	9076943	exon	Tequila +	chr3L	9080727	intron	Tequila +	chr3L	9084511	exon	Tequila +	chr3L_7_9080001	chr3L_9080001	RAL-181
1015	chr3L	9130556	9130581	chr3L	9134317	9134342	412	14	3761	6.5	5.0	5.8	2.1	3786	chr3L	9130556	intergenic	bol -	chr3L	9132449	intergenic	not near genes	chr3L	9134342	intergenic	Dhpr +	chr3L_14_9130001	chr3L_9130001	RAL-181
1016	chr3L	9164706	9164731	chr3L	9166168	9166189	hobo	7	1465	2.0	1.0	1.5	2.8	1483	chr3L	9164706	intron	Rdl -	chr3L	9165448	intron	Rdl -	chr3L	9166189	intron	Rdl -	chr3L_7_9165001	chr3L_9165001	RAL-181
1018	chr3L	9219244	9219274	chr3L	9219913	9219946	jockey	12	666	12.5	4.5	8.5	1.3	702	chr3L	9219244	intergenic	not near genes	chr3L	9219595	intergenic	not near genes	chr3L	9219946	intergenic	not near genes	chr3L_12_9215001	chr3L_9215001	RAL-181
1020	chr3L	9270617	9270637	chr3L	9278372	9278392	roo	11	7754	4.0	4.0	4.0	2.2	7775	chr3L	9270617	intron	GluRIB +	chr3L	9274504	intron	GluRIB +	chr3L	9278392	exon	GluRIB +	chr3L_11_9270001	chr3L_9270001	RAL-181
1021	chr3L	9270638	9270651	chr3L	9278371	9278396	roo	6	7747	3.0	3.5	3.2	1.4	7758	chr3L	9270638	intron	GluRIB +	chr3L	9274517	intron	GluRIB +	chr3L	9278396	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	RAL-181
1024	chr3L	9443518	9443540	chr3L	9445300	9445323	S-element	10	1788	0.0	1.5	0.8	5.6	1805	chr3L	9443518	intron	CG33926 +	chr3L	9444420	intron	CG33926 +	chr3L	9445323	intron	CG33926 +	chr3L_10_9440001	chr3L_9440001	RAL-181
1025	chr3L	9501703	9501726	chr3L	9502189	9502211	roo	6	486	3.5	5.0	4.2	1.2	508	chr3L	9501703	intron	path -	chr3L	9501957	intron	path -	chr3L	9502211	intron	path -	chr3L_6_9500001	chr3L_9500001	RAL-181
1028	chr3L	9533779	9533786	chr3L	9541317	9541346	412	4	7552	5.5	11.0	8.2	0.4	7567	chr3L	9533779	intergenic	not near genes	chr3L	9537562	intergenic	not near genes	chr3L	9541346	intergenic	not near genes	chr3L_4_9535001	chr3L_9535001	RAL-181
1029	chr3L	9571906	9571936	chr3L	9572251	9572284	jockey	4	347	1.5	1.0	1.2	1.8	378	chr3L	9571906	intron	CG42673 +	chr3L	9572095	intron	CG42673 +	chr3L	9572284	intron	CG42673 +	chr3L_4_9570001	chr3L_9570001	RAL-181
1030	chr3L	9575906	9575935	chr3L	9580984	9581013	jockey	13	5076	9.5	6.5	8.0	1.4	5107	chr3L	9575906	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581013	intron	CG42673 +	chr3L_13_9575001	chr3L_9575001	RAL-181
1034	chr3L	9929677	9929701	chr3L	9938456	9938479	roo	7	8778	2.5	11.5	7.0	0.9	8802	chr3L	9929677	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938479	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-181
1053	chr3L	10414942	10414978	chr3L	10417313	10417350	Doc	18	2371	3.0	2.0	2.5	5.1	2408	chr3L	10414942	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417350	intergenic	not near genes	chr3L_18_10415001	chr3L_10415001	RAL-181
1063	chr3L	11087063	11087089	chr3L	11088851	11088875	S-element	7	1787	2.5	4.0	3.2	1.7	1812	chr3L	11087063	intron	JIL-1 -	chr3L	11087969	intron	JIL-1 -	chr3L	11088875	intron	JIL-1 -	chr3L_7_11085001	chr3L_11085001	RAL-181
1064	chr3L	11105296	11105329	chr3L	11107007	11107038	X-element	8	1710	3.5	5.5	4.5	1.5	1742	chr3L	11105296	intergenic	not near genes	chr3L	11106167	intergenic	not near genes	chr3L	11107038	exon	CG32073 -	chr3L_8_11105001	chr3L_11105001	RAL-181
1070	chr3L	11329706	11329728	chr3L	11332894	11332907	jockey	5	3183	5.5	7.0	6.2	0.7	3201	chr3L	11329706	intergenic	not near genes	chr3L	11331306	intergenic	not near genes	chr3L	11332907	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-181
1082	chr3L	11864554	11864583	chr3L	11865849	11865878	pogo	9	1294	3.5	6.5	5.0	1.5	1324	chr3L	11864554	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865878	intron	CG44837 -	chr3L_9_11865001	chr3L_11865001	RAL-181
1101	chr3L	12874928	12874960	chr3L	12877220	12877250	jockey	9	2291	1.5	1.0	1.2	4.1	2322	chr3L	12874928	intergenic	not near genes	chr3L	12876089	intergenic	not near genes	chr3L	12877250	intergenic	not near genes	chr3L_9_12875001	chr3L_12875001	RAL-181
1103	chr3L	12919282	12919312	chr3L	12924748	12924751	Rt1c	10	5464	5.5	3.5	4.5	1.8	5469	chr3L	12919282	intergenic	not near genes	chr3L	12922016	intergenic	not near genes	chr3L	12924751	intergenic	not near genes	chr3L_10_12920001	chr3L_12920001	RAL-181
1104	chr3L	12957797	12957816	chr3L	12962279	12962298	copia	12	4481	2.0	5.5	3.8	2.5	4501	chr3L	12957797	intergenic	not near genes	chr3L	12960048	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_12_12960001	chr3L_12960001	RAL-181
1113	chr3L	13525156	13525187	chr3L	13532952	13532980	roo	12	7792	6.5	6.5	6.5	1.6	7824	chr3L	13525156	intergenic	not near genes	chr3L	13529068	intergenic	not near genes	chr3L	13532980	intergenic	not near genes	chr3L_12_13525001	chr3L_13525001	RAL-181
1117	chr3L	13804557	13804571	chr3L	13822843	13822857	roo	4	18286	4.5	10.5	7.5	0.5	18300	chr3L	13804557	intergenic	not near genes	chr3L	13813707	intergenic	not near genes	chr3L	13822857	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	RAL-181
1123	chr3L	14245573	14245591	chr3L	14245663	14245685	1360	11	92	3.5	2.5	3.0	2.8	112	chr3L	14245573	3` UTR	CR44561 -	chr3L	14245629	3` UTR	CR44561 -	chr3L	14245685	3` UTR	CR44561 -	chr3L_11_14245001	chr3L_14245001	RAL-181
1126	chr3L	14295985	14296016	chr3L	14296471	14296499	roo	15	484	5.0	5.0	5.0	2.5	514	chr3L	14295985	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296499	intron	fz +	chr3L_15_14295001	chr3L_14295001	RAL-181
1127	chr3L	14312026	14312045	chr3L	14316840	14316848	X-element	4	4811	3.5	3.5	3.5	0.9	4822	chr3L	14312026	exon	fz +	chr3L	14314437	intron	fz +	chr3L	14316848	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-181
1137	chr3L	14721198	14721209	chr3L	14723023	14723028	Rt1c	7	1837	6.5	5.0	5.8	1.0	1830	chr3L	14721198	intron	ome +	chr3L	14722113	intron	ome +	chr3L	14723028	intron	ome +	chr3L_7_14720001	chr3L_14720001	RAL-181
1138	chr3L	14725613	14725625	chr3L	14728601	14728619	Doc	5	2993	4.5	7.0	5.8	0.7	3006	chr3L	14725613	intron	ome +	chr3L	14727116	intron	ome +	chr3L	14728619	intron	ome +	chr3L_5_14725001	chr3L_14725001	RAL-181
1143	chr3L	15085049	15085085	chr3L	15086214	15086243	1360	8	1160	1.0	3.5	2.2	2.5	1194	chr3L	15085049	intron	cp309 -	chr3L	15085646	intron	cp309 -	chr3L	15086243	intron	cp309 -	chr3L_8_15085001	chr3L_15085001	RAL-181
1152	chr3L	15423769	15423780	chr3L	15426603	15426623	opus	5	2839	3.0	3.5	3.2	1.2	2854	chr3L	15423769	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426623	intergenic	not near genes	chr3L_5_15425001	chr3L_15425001	RAL-181
1166	chr3L	16184111	16184141	chr3L	16188922	16188960	X-element	7	4817	2.0	3.0	2.5	2.0	4849	chr3L	16184111	intergenic	not near genes	chr3L	16186536	intergenic	not near genes	chr3L	16188960	intergenic	not near genes	chr3L_7_16185001	chr3L_16185001	RAL-181
1168	chr3L	16443849	16443875	chr3L	16446187	16446215	Doc	11	2338	4.0	6.0	5.0	1.8	2366	chr3L	16443849	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446215	intron,intron	CG33158 +,dsx-c73A -	chr3L_11_16445001	chr3L_16445001	RAL-181
1170	chr3L	16493975	16493992	chr3L	16494492	16494509	jockey	7	516	10.5	5.5	8.0	0.8	534	chr3L	16493975	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494509	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_7_16490001	chr3L_16490001	RAL-181
1176	chr3L	16616509	16616534	chr3L	16621837	16621862	297	8	5327	5.5	5.0	5.2	1.3	5353	chr3L	16616509	3` UTR	Abl -	chr3L	16619186	3` UTR	Abl -	chr3L	16621862	3` UTR	Abl -	chr3L_8_16615001	chr3L_16615001	RAL-181
1177	chr3L	16684034	16684045	chr3L	16689254	16689266	copia	4	5220	2.0	6.5	4.2	0.8	5232	chr3L	16684034	intron,intron	Lasp -,CG43954 -	chr3L	16686650	intron,intron	Lasp -,CG43954 -	chr3L	16689266	intron,intron	Lasp -,CG43954 -	chr3L_4_16685001	chr3L_16685001	RAL-181
1181	chr3L	16945725	16945759	chr3L	16954878	16954892	roo	18	9145	7.5	7.5	7.5	2.1	9167	chr3L	16945725	exon	Obp73a +	chr3L	16950308	intergenic	not near genes	chr3L	16954892	5` UTR	Nc73EF +	chr3L_18_16950001	chr3L_16950001	RAL-181
1183	chr3L	17085010	17085038	chr3L	17094151	17094187	roo	11	9147	1.5	1.0	1.2	5.0	9177	chr3L	17085010	intron	Rbp6 -	chr3L	17089598	intron	Rbp6 -	chr3L	17094187	intron	Rbp6 -	chr3L_11_17085001	chr3L_17085001	RAL-181
1188	chr3L	17516985	17517013	chr3L	17524543	17524571	412	9	7555	4.5	4.0	4.2	1.7	7586	chr3L	17516985	intron	CG7564 +	chr3L	17520778	intron	CG7564 +	chr3L	17524571	3` UTR	CG7564 +	chr3L_9_17520001	chr3L_17520001	RAL-181
1194	chr3L	17918375	17918402	chr3L	17921178	17921205	opus	6	2803	1.5	1.5	1.5	2.4	2830	chr3L	17918375	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921205	intergenic	not near genes	chr3L_6_17915001	chr3L_17915001	RAL-181
1209	chr3L	18506146	18506160	chr3L	18509592	18509619	F-element	8	3457	2.0	2.5	2.2	2.5	3473	chr3L	18506146	intergenic	not near genes	chr3L	18507882	intergenic	not near genes	chr3L	18509619	intergenic	not near genes	chr3L_8_18505001	chr3L_18505001	RAL-181
1210	chr3L	18528635	18528651	chr3L	18537789	18537812	roo	6	9158	4.0	1.5	2.8	1.6	9177	chr3L	18528635	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537812	intergenic	not near genes	chr3L_6_18530001	chr3L_18530001	RAL-181
1220	chr3L	18772407	18772441	chr3L	18781088	18781122	roo	27	8679	3.0	6.5	4.8	4.7	8715	chr3L	18772407	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_27_18775001	chr3L_18775001	RAL-181
1221	chr3L	18833780	18833811	chr3L	18834944	18834975	1360	15	1162	2.5	4.5	3.5	3.3	1195	chr3L	18833780	intron	Indy -	chr3L	18834378	intron	Indy -	chr3L	18834975	intron	Indy -	chr3L_15_18830001	chr3L_18830001	RAL-181
1227	chr3L	19008846	19008877	chr3L	19009184	19009213	jockey	11	335	4.0	9.0	6.5	1.5	367	chr3L	19008846	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009213	intron	nkd -	chr3L_11_19005001	chr3L_19005001	RAL-181
1231	chr3L	19115651	19115672	chr3L	19115814	19115852	BS	5	176	2.0	3.0	2.5	1.4	201	chr3L	19115651	intron	CG14082 -	chr3L	19115752	intron	CG14082 -	chr3L	19115852	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	RAL-181
1232	chr3L	19117051	19117075	chr3L	19124493	19124522	mdg1	11	7445	4.5	5.0	4.8	1.9	7471	chr3L	19117051	intron	CG14082 -	chr3L	19120786	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_11_19120001	chr3L_19120001	RAL-181
1235	chr3L	19208060	19208089	chr3L	19209434	19209460	Doc	11	1371	8.5	4.5	6.5	1.5	1400	chr3L	19208060	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209460	intron	fz2 -	chr3L_11_19205001	chr3L_19205001	RAL-181
1246	chr3L	19848505	19848533	chr3L	19857695	19857723	roo	8	9188	3.5	6.5	5.0	1.3	9218	chr3L	19848505	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857723	intron	Papss +	chr3L_8_19850001	chr3L_19850001	RAL-181
1253	chr3L	20113661	20113691	chr3L	20122913	20122948	roo	5	9256	0.5	2.0	1.2	2.3	9287	chr3L	20113661	intergenic	not near genes	chr3L	20118304	intergenic	not near genes	chr3L	20122948	intergenic	not near genes	chr3L_5_20115001	chr3L_20115001	RAL-181
1256	chr3L	20257342	20257361	chr3L	20258462	20258481	pogo	8	1119	3.0	7.0	5.0	1.3	1139	chr3L	20257342	intron	rdgC +	chr3L	20257912	intron	rdgC +	chr3L	20258481	intron	rdgC +	chr3L_8_20255001	chr3L_20255001	RAL-181
1260	chr3L	20476771	20476778	chr3L	20484367	20484377	springer	5	7598	4.0	3.5	3.8	1.0	7606	chr3L	20476771	3` UTR	isoQC +	chr3L	20480574	intergenic	not near genes	chr3L	20484377	3` UTR	ZnT77C -	chr3L_5_20480001	chr3L_20480001	RAL-181
1261	chr3L	20590065	20590095	chr3L	20590602	20590634	412	8	533	5.0	4.5	4.8	1.4	569	chr3L	20590065	intergenic	not near genes	chr3L	20590350	intergenic	not near genes	chr3L	20590634	intergenic	not near genes	chr3L_8_20590001	chr3L_20590001	RAL-181
1262	chr3L	20821272	20821306	chr3L	20824740	20824774	NOF	4	3468	3.5	2.5	3.0	1.0	3502	chr3L	20821272	intron	Pka-R1 +	chr3L	20823023	intron	Pka-R1 +	chr3L	20824774	intron	Pka-R1 +	chr3L_4_20820001	chr3L_20820001	RAL-181
1265	chr3L	21014936	21014944	chr3L	21023396	21023405	Tirant	4	8471	8.0	3.5	5.8	0.6	8469	chr3L	21014936	intron	skd -	chr3L	21019170	intron	skd -	chr3L	21023405	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-181
1269	chr3L	21151864	21151892	chr3L	21156948	21156976	flea	5	5084	6.5	0.5	3.5	1.1	5112	chr3L	21151864	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156976	intron	Ac78C -	chr3L_5_21150001	chr3L_21150001	RAL-181
1272	chr3L	21243752	21243774	chr3L	21251313	21251330	412	5	7560	3.5	5.0	4.2	1.0	7578	chr3L	21243752	intron	Eip78C +	chr3L	21247541	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_5_21245001	chr3L_21245001	RAL-181
1274	chr3L	21306151	21306174	chr3L	21315310	21315333	roo	5	9159	4.0	2.5	3.2	1.2	9182	chr3L	21306151	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310742	intron	Pc -	chr3L	21315333	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-181
1277	chr3L	21498851	21498868	chr3L	21500470	21500497	1360	7	1627	2.5	6.5	4.5	1.3	1646	chr3L	21498851	intron	Glg1 -	chr3L	21499674	intron	Glg1 -	chr3L	21500497	intron	Glg1 -	chr3L_7_21495001	chr3L_21495001	RAL-181
1278	chr3L	21749329	21749333	chr3L	21754477	21754493	Doc	5	5155	9.5	10.5	10.0	0.5	5164	chr3L	21749329	intron	Syn1 -	chr3L	21751911	intron	Syn1 -	chr3L	21754493	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-181
1282	chr3L	22099675	22099705	chr3L	22105861	22105891	3S18	9	6185	4.0	3.5	3.8	1.9	6216	chr3L	22099675	intergenic	not near genes	chr3L	22102783	intergenic	not near genes	chr3L	22105891	intergenic	not near genes	chr3L_9_22100001	chr3L_22100001	RAL-181
1291	chr3L	22555771	22555796	chr3L	22563238	22563265	blood	11	7462	3.0	4.0	3.5	2.4	7494	chr3L	22555771	intergenic	not near genes	chr3L	22559518	intergenic	not near genes	chr3L	22563265	intergenic	not near genes	chr3L_11_22555001	chr3L_22555001	RAL-181
1292	chr3L	22577619	22577653	chr3L	22582407	22582441	Doc	15	4786	0.5	5.5	3.0	3.8	4822	chr3L	22577619	intergenic	not near genes	chr3L	22580030	intergenic	not near genes	chr3L	22582441	3` UTR	CG14459 -	chr3L_15_22580001	chr3L_22580001	RAL-181
1293	chr3L	22617195	22617220	chr3L	22624647	22624665	blood	12	7450	7.5	5.5	6.5	1.6	7470	chr3L	22617195	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624665	intron	CG14459 -	chr3L_12_22620001	chr3L_22620001	RAL-181
1298	chr3L	22761388	22761415	chr3L	22766821	22766849	Ivk	7	5432	4.5	3.0	3.8	1.5	5461	chr3L	22761388	intron	SPoCk +	chr3L	22764118	intron	SPoCk +	chr3L	22766849	intron	SPoCk +	chr3L_7_22760001	chr3L_22760001	RAL-181
1305	chr3L	22962454	22962477	chr3L	22963775	22963798	INE-1	15	1319	3.0	8.5	5.8	2.2	1344	chr3L	22962454	intergenic	not near genes	chr3L	22963126	intergenic	not near genes	chr3L	22963798	intergenic	not near genes	chr3L_15_22960001	chr3L_22960001	RAL-181
1308	chr3L	22989864	22989895	chr3L	22996835	22996869	297	8	6971	4.0	6.5	5.2	1.3	7005	chr3L	22989864	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996869	intergenic	not near genes	chr3L_8_22990001	chr3L_22990001	RAL-181
1311	chr3L	24012407	24012428	chr3L	24020748	24020769	roo	4	8339	1.5	0.0	0.8	2.2	8362	chr3L	24012407	intergenic	not near genes	chr3L	24016588	intergenic	not near genes	chr3L	24020769	intergenic	not near genes	chr3L_4_24015001	chr3L_24015001	RAL-181
1312	chr3L	24168631	24168640	chr3L	24176392	24176399	ZAM	5	7759	10.5	8.0	9.2	0.5	7768	chr3L	24168631	intron	Snap25 +	chr3L	24172515	intron	Snap25 +	chr3L	24176399	intron	Snap25 +	chr3L_5_24170001	chr3L_24170001	RAL-181
1313	chr3L	24168645	24168662	chr3L	24176389	24176415	ZAM	6	7753	4.5	6.5	5.5	0.9	7770	chr3L	24168645	intron	Snap25 +	chr3L	24172530	intron	Snap25 +	chr3L	24176415	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	RAL-181
1321	chr3L	25628501	25628527	chr3L	25633265	25633289	F-element	11	4767	7.5	5.5	6.5	1.5	4788	chr3L	25628501	intron	CG41343 -	chr3L	25630895	intron	CG41343 -	chr3L	25633289	intron	CG41343 -	chr3L_11_25630001	chr3L_25630001	RAL-181
1323	chr3L	24948769	24948773	chr3L	25934972	25934993	diver2	5	986207	29.5	21.0	25.2	0.2	986224	chr3L	24948769	intergenic	not near genes	chr3L	25441881	intergenic	not near genes	chr3L	25934993	intron	CG40178 -	chr3L_5_25440001	chr3L_25440001	RAL-181
1325	chr3L	23611157	23611160	chr3L	27363462	27363465	Gypsy12A_LTR	4	3752304	26.0	23.0	24.5	0.2	3752308	chr3L	23611157	intron	AGO3 +	chr3L	25487311	intron	CG41343 -	chr3L	27363465	intron	Dbp80 +	chr3L_4_25485001	chr3L_25485001	RAL-181
1331	chr3R	1451444	1451449	chr3R	1455047	1455048	Max-element	4	3600	35.0	17.5	26.2	0.1	3604	chr3R	1451444	intron	CG40155 +	chr3R	1453246	intron	CG40155 +	chr3R	1455048	exon	CG40155 +	chr3R_4_1450001	chr3R_1450001	RAL-181
1334	chr3R	1850886	1850903	chr3R	1853513	1853530	INE-1	6	2626	3.0	2.0	2.5	1.7	2644	chr3R	1850886	intron	CG42623 +	chr3R	1852208	intron	CG42623 +	chr3R	1853530	intron	CG42623 +	chr3R_6_1850001	chr3R_1850001	RAL-181
1341	chr3R	4105040	4105071	chr3R	4110243	4110265	copia	11	5201	1.0	3.5	2.2	3.4	5225	chr3R	4105040	intergenic	not near genes	chr3R	4107652	intergenic	not near genes	chr3R	4110265	intergenic	not near genes	chr3R_11_4105001	chr3R_4105001	RAL-181
1342	chr3R	4206070	4206104	chr3R	4211644	4211677	mdg3	7	5574	5.0	0.0	2.5	2.0	5607	chr3R	4206070	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211677	intron	CG14636 -	chr3R_7_4205001	chr3R_4205001	RAL-181
1344	chr3R	4408408	4408437	chr3R	4412712	4412741	Juan	8	4301	3.0	2.5	2.8	2.1	4333	chr3R	4408408	intron	CG32944 -	chr3R	4410574	intron	CG32944 -	chr3R	4412741	intron	CG32944 -	chr3R_8_4410001	chr3R_4410001	RAL-181
1346	chr3R	4609550	4609576	chr3R	4610710	4610738	1360	13	1163	6.0	5.5	5.8	1.9	1188	chr3R	4609550	intergenic	not near genes	chr3R	4610144	intergenic	not near genes	chr3R	4610738	intergenic	not near genes	chr3R_13_4610001	chr3R_4610001	RAL-181
1348	chr3R	4753238	4753278	chr3R	4757541	4757569	F-element	14	4301	1.5	8.0	4.8	2.4	4331	chr3R	4753238	intron,intron	atms +,CG44098 -	chr3R	4755404	intron,intron	atms +,CG44098 -	chr3R	4757569	intron,exon	atms +,CG44098 -	chr3R_14_4755001	chr3R_4755001	RAL-181
1349	chr3R	4759719	4759751	chr3R	4761216	4761248	hopper2	14	1495	4.5	11.5	8.0	1.6	1529	chr3R	4759719	intron,intron	atms +,CG44098 -	chr3R	4760484	intron,intron	atms +,CG44098 -	chr3R	4761248	intron,intron	atms +,CG44098 -	chr3R_14_4760001	chr3R_4760001	RAL-181
1352	chr3R	4887479	4887511	chr3R	4894856	4894881	rover	10	7374	2.0	4.0	3.0	2.5	7402	chr3R	4887479	intergenic	not near genes	chr3R	4891180	intergenic	not near genes	chr3R	4894881	intergenic	not near genes	chr3R_10_4890001	chr3R_4890001	RAL-181
1353	chr3R	5045848	5045868	chr3R	5052950	5052969	HMS-Beagle	7	7100	5.0	4.0	4.5	1.3	7121	chr3R	5045848	intron	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052969	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-181
1354	chr3R	5067981	5068012	chr3R	5073498	5073528	mdg3	12	5516	3.0	5.0	4.0	2.4	5547	chr3R	5067981	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073528	intergenic	not near genes	chr3R_12_5070001	chr3R_5070001	RAL-181
1362	chr3R	5338399	5338419	chr3R	5343576	5343593	Rt1c	5	5176	4.5	4.0	4.2	1.0	5194	chr3R	5338399	intron	mtd -	chr3R	5340996	intron	mtd -	chr3R	5343593	intron	mtd -	chr3R_5_5340001	chr3R_5340001	RAL-181
1363	chr3R	5445963	5445991	chr3R	5452421	5452451	Burdock	10	6457	1.5	4.0	2.8	2.6	6488	chr3R	5445963	intron	CG14669 +	chr3R	5449207	intron	CG14669 +	chr3R	5452451	intron	CG14669 +	chr3R_10_5445001	chr3R_5445001	RAL-181
1368	chr3R	5746027	5746046	chr3R	5746268	5746287	pogo	5	241	3.5	9.0	6.2	0.7	260	chr3R	5746027	3` UTR	Madm +	chr3R	5746157	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_5_5745001	chr3R_5745001	RAL-181
1370	chr3R	5809131	5809144	chr3R	5809372	5809382	pogo	5	240	1.5	6.0	3.8	1.0	251	chr3R	5809131	3` UTR	CG11000 +	chr3R	5809256	3` UTR	CG11000 +	chr3R	5809382	3` UTR	CG11000 +	chr3R_5_5805001	chr3R_5805001	RAL-181
1371	chr3R	5822397	5822408	chr3R	5823562	5823566	1360	5	1165	5.5	7.0	6.2	0.7	1169	chr3R	5822397	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823566	3` UTR	CG2023 -	chr3R_5_5820001	chr3R_5820001	RAL-181
1372	chr3R	5927559	5927591	chr3R	5927799	5927830	pogo	12	239	5.0	4.0	4.5	2.2	271	chr3R	5927559	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927830	intron	CG34113 -	chr3R_12_5925001	chr3R_5925001	RAL-181
1373	chr3R	6015965	6015995	chr3R	6024446	6024476	Tirant	10	8477	2.0	4.5	3.2	2.4	8511	chr3R	6015965	intergenic	not near genes	chr3R	6020220	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_10_6020001	chr3R_6020001	RAL-181
1376	chr3R	6158507	6158542	chr3R	6167090	6167123	Tirant	18	8578	6.0	5.0	5.5	2.8	8616	chr3R	6158507	intergenic	not near genes	chr3R	6162815	intergenic	not near genes	chr3R	6167123	intergenic	CG1077 +	chr3R_18_6160001	chr3R_6160001	RAL-181
1377	chr3R	6175186	6175203	chr3R	6182444	6182464	HMS-Beagle2	5	7264	3.5	2.5	3.0	1.2	7278	chr3R	6175186	intergenic	Osi1 +	chr3R	6178825	intron	CR45194 +	chr3R	6182464	intergenic	CR45194 +	chr3R_5_6175001	chr3R_6175001	RAL-181
1381	chr3R	6737501	6737526	chr3R	6739288	6739302	Doc	14	1786	3.5	4.5	4.0	2.8	1801	chr3R	6737501	intron	pb -	chr3R	6738402	intron	pb -	chr3R	6739302	intron	pb -	chr3R_14_6735001	chr3R_6735001	RAL-181
1398	chr3R	7729465	7729498	chr3R	7737402	7737409	Stalker2	8	7932	5.0	5.0	5.0	1.3	7944	chr3R	7729465	intergenic	not near genes	chr3R	7733437	intergenic	not near genes	chr3R	7737409	intergenic	not near genes	chr3R_8_7730001	chr3R_7730001	RAL-181
1403	chr3R	8094408	8094429	chr3R	8099711	8099734	Transpac	6	5303	4.0	4.0	4.0	1.2	5326	chr3R	8094408	intron	CG7900 +	chr3R	8097071	intron	CG7900 +	chr3R	8099734	intron	CG7900 +	chr3R_6_8095001	chr3R_8095001	RAL-181
1404	chr3R	8101763	8101789	chr3R	8104847	8104873	G2	10	3081	3.0	1.0	2.0	3.3	3110	chr3R	8101763	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104873	3` UTR	CG7900 +	chr3R_10_8100001	chr3R_8100001	RAL-181
1406	chr3R	8207557	8207585	chr3R	8208401	8208430	F-element	8	842	4.0	7.5	5.8	1.2	873	chr3R	8207557	intergenic	not near genes	chr3R	8207994	intergenic	not near genes	chr3R	8208430	intergenic	not near genes	chr3R_8_8205001	chr3R_8205001	RAL-181
1413	chr3R	8403005	8403041	chr3R	8412171	8412207	roo	19	9165	3.5	5.5	4.5	3.5	9202	chr3R	8403005	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412207	intron	CG45263 -	chr3R_19_8405001	chr3R_8405001	RAL-181
1418	chr3R	8570477	8570502	chr3R	8575113	8575122	HMS-Beagle	12	4634	9.0	4.5	6.8	1.5	4645	chr3R	8570477	intergenic	not near genes	chr3R	8572800	intergenic	not near genes	chr3R	8575122	intergenic	not near genes	chr3R_12_8570001	chr3R_8570001	RAL-181
1419	chr3R	8601772	8601799	chr3R	8610923	8610951	roo	16	9149	4.5	6.0	5.2	2.6	9179	chr3R	8601772	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610951	intron	5-HT2B +	chr3R_16_8605001	chr3R_8605001	RAL-181
1421	chr3R	8707359	8707385	chr3R	8709797	8709826	jockey	13	2439	8.5	8.0	8.2	1.4	2467	chr3R	8707359	intergenic	not near genes	chr3R	8708592	intergenic	not near genes	chr3R	8709826	intergenic	not near genes	chr3R_13_8705001	chr3R_8705001	RAL-181
1424	chr3R	8894870	8894902	chr3R	8896026	8896058	1360	8	1154	2.0	2.5	2.2	2.5	1188	chr3R	8894870	intron	pyd -	chr3R	8895464	intron	pyd -	chr3R	8896058	intron	pyd -	chr3R_8_8895001	chr3R_8895001	RAL-181
1434	chr3R	9278777	9278812	chr3R	9284037	9284053	Rt1a	17	5258	2.5	10.5	6.5	2.3	5276	chr3R	9278777	intergenic	not near genes	chr3R	9281415	intergenic	not near genes	chr3R	9284053	intergenic	not near genes	chr3R_17_9280001	chr3R_9280001	RAL-181
1435	chr3R	9319570	9319609	chr3R	9320005	9320027	jockey	12	433	3.5	4.5	4.0	2.4	457	chr3R	9319570	intron	CG8861 -	chr3R	9319798	intron	CG8861 -	chr3R	9320027	intron	CG8861 -	chr3R_12_9315001	chr3R_9315001	RAL-181
1443	chr3R	9699973	9700004	chr3R	9700062	9700093	1360	15	88	7.5	4.5	6.0	2.1	120	chr3R	9699973	intron	Unc-115a -	chr3R	9700033	intron	Unc-115a -	chr3R	9700093	intron	Unc-115a -	chr3R_15_9700001	chr3R_9700001	RAL-181
1450	chr3R	10231786	10231808	chr3R	10237363	10237379	mdg3	6	5576	0.0	5.5	2.8	1.6	5593	chr3R	10231786	intron	CG42795 +	chr3R	10234582	intron	CG42795 +	chr3R	10237379	intron	CG42795 +	chr3R_6_10230001	chr3R_10230001	RAL-181
1461	chr3R	10804183	10804208	chr3R	10811715	10811740	17.6	8	7531	0.5	2.5	1.5	3.2	7557	chr3R	10804183	intergenic	CG14692 -	chr3R	10807962	intergenic	not near genes	chr3R	10811740	3` UTR	CG14693 -	chr3R_8_10805001	chr3R_10805001	RAL-181
1474	chr3R	11379237	11379268	chr3R	11388392	11388423	roo	8	9150	2.0	3.5	2.8	2.1	9186	chr3R	11379237	intron	pros +	chr3R	11383830	intron	pros +	chr3R	11388423	intron	pros +	chr3R_8_11380001	chr3R_11380001	RAL-181
1483	chr3R	11841064	11841097	chr3R	11846250	11846288	BS	12	5189	3.5	4.0	3.8	2.5	5224	chr3R	11841064	intron	CG6959 -	chr3R	11843676	intron	CG6959 -	chr3R	11846288	intron	CG6959 -	chr3R_12_11840001	chr3R_11840001	RAL-181
1488	chr3R	12022906	12022915	chr3R	12025077	12025092	pogo	7	2176	2.5	13.0	7.8	0.8	2186	chr3R	12022906	intergenic	not near genes	chr3R	12023999	intergenic	not near genes	chr3R	12025092	intergenic	not near genes	chr3R_7_12020001	chr3R_12020001	RAL-181
1507	chr3R	12920155	12920165	chr3R	12925356	12925368	copia	6	5202	5.5	3.0	4.2	1.2	5213	chr3R	12920155	intron	beat-Vb +	chr3R	12922762	intron	beat-Vb +	chr3R	12925368	intron	beat-Vb +	chr3R_6_12920001	chr3R_12920001	RAL-181
1508	chr3R	12920166	12920185	chr3R	12925355	12925388	copia	6	5200	3.0	3.0	3.0	1.5	5222	chr3R	12920166	intron	beat-Vb +	chr3R	12922777	intron	beat-Vb +	chr3R	12925388	intron	beat-Vb +	chr3R_6_12920001	chr3R_12920001	RAL-181
1515	chr3R	13143042	13143058	chr3R	13148616	13148621	mdg3	7	5570	5.5	10.5	8.0	0.8	5579	chr3R	13143042	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145832	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148621	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	RAL-181
1524	chr3R	13314096	13314130	chr3R	13318884	13318918	Doc	7	4782	1.5	3.0	2.2	2.2	4822	chr3R	13314096	intergenic	not near genes	chr3R	13316507	intergenic	not near genes	chr3R	13318918	intergenic	CG45080 -	chr3R_7_13315001	chr3R_13315001	RAL-181
1538	chr3R	14180831	14180840	chr3R	14185576	14185605	F-element	5	4761	1.0	3.0	2.0	1.7	4774	chr3R	14180831	intron	Dop1R1 -	chr3R	14183218	intron	Dop1R1 -	chr3R	14185605	intron	Dop1R1 -	chr3R_5_14180001	chr3R_14180001	RAL-181
1539	chr3R	14194426	14194459	chr3R	14203575	14203608	roo	11	9149	8.5	3.5	6.0	1.6	9182	chr3R	14194426	intron	Dop1R1 -	chr3R	14199017	intron	Dop1R1 -	chr3R	14203608	intron	Dop1R1 -	chr3R_11_14195001	chr3R_14195001	RAL-181
1540	chr3R	14246396	14246413	chr3R	14247892	14247896	jockey	8	1493	7.5	4.5	6.0	1.1	1500	chr3R	14246396	intergenic	not near genes	chr3R	14247146	intergenic	not near genes	chr3R	14247896	intergenic	not near genes	chr3R_8_14245001	chr3R_14245001	RAL-181
1553	chr3R	15041427	15041458	chr3R	15045194	15045201	Doc	6	3763	2.5	3.5	3.0	1.5	3774	chr3R	15041427	intergenic	not near genes	chr3R	15043314	intergenic	not near genes	chr3R	15045201	intergenic	not near genes	chr3R_6_15040001	chr3R_15040001	RAL-181
1558	chr3R	15079817	15079837	chr3R	15080051	15080077	pogo	7	239	6.0	0.5	3.2	1.7	260	chr3R	15079817	3` UTR	CG6966 -	chr3R	15079947	3` UTR	CG6966 -	chr3R	15080077	3` UTR	CG6966 -	chr3R_7_15075001	chr3R_15075001	RAL-181
1560	chr3R	15102482	15102489	chr3R	15109796	15109803	412	4	7314	3.0	3.5	3.2	1.0	7321	chr3R	15102482	intron	CG42788 -	chr3R	15106142	intron	CG42788 -	chr3R	15109803	intron	CG42788 -	chr3R_4_15105001	chr3R_15105001	RAL-181
1562	chr3R	15132057	15132085	chr3R	15135116	15135144	Juan	9	3058	6.5	6.5	6.5	1.2	3087	chr3R	15132057	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135144	3` UTR	CG6912 -	chr3R_9_15130001	chr3R_15130001	RAL-181
1564	chr3R	15162567	15162572	chr3R	15167308	15167339	F-element	4	4754	5.0	2.5	3.8	0.8	4772	chr3R	15162567	intron	Gyc88E +	chr3R	15164953	intron	Gyc88E +	chr3R	15167339	intron	Gyc88E +	chr3R_4_15160001	chr3R_15160001	RAL-181
1571	chr3R	15601163	15601194	chr3R	15608685	15608716	412	12	7520	9.5	8.5	9.0	1.2	7553	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_12_15600001	chr3R_15600001	RAL-181
1572	chr3R	15618748	15618764	chr3R	15626222	15626238	blood	6	7474	0.5	12.0	6.2	0.8	7490	chr3R	15618748	intergenic	not near genes	chr3R	15622493	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_6_15620001	chr3R_15620001	RAL-181
1593	chr3R	16756317	16756344	chr3R	16762508	16762532	diver	17	6189	6.0	0.5	3.2	4.0	6215	chr3R	16756317	intron	bxd -	chr3R	16759424	intron	bxd -	chr3R	16762532	intron	bxd -	chr3R_17_16755001	chr3R_16755001	RAL-181
1600	chr3R	17294666	17294702	chr3R	17295089	17295130	BS	13	424	1.5	2.5	2.0	4.3	464	chr3R	17294666	intergenic	not near genes	chr3R	17294898	intergenic	not near genes	chr3R	17295130	intergenic	not near genes	chr3R_13_17290001	chr3R_17290001	RAL-181
1602	chr3R	17346702	17346718	chr3R	17348263	17348281	F-element	7	1560	2.0	8.5	5.2	1.1	1579	chr3R	17346702	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348281	intron	beat-IIa -	chr3R_7_17345001	chr3R_17345001	RAL-181
1612	chr3R	17925853	17925889	chr3R	17927317	17927356	hobo	14	1465	5.0	10.0	7.5	1.6	1503	chr3R	17925853	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_14_17925001	chr3R_17925001	RAL-181
1613	chr3R	18032784	18032809	chr3R	18040452	18040475	opus	9	7667	0.0	2.0	1.0	4.5	7691	chr3R	18032784	intergenic	not near genes	chr3R	18036630	intergenic	not near genes	chr3R	18040475	intergenic	not near genes	chr3R_9_18035001	chr3R_18035001	RAL-181
1623	chr3R	18606515	18606534	chr3R	18610744	18610766	F-element	5	4231	3.5	3.0	3.2	1.2	4251	chr3R	18606515	intron,intron	qin +,CG14304 -	chr3R	18608640	intron,intron	qin +,CG14304 -	chr3R	18610766	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	RAL-181
1632	chr3R	19136407	19136408	chr3R	19139793	19139810	Bari1	5	3392	70.0	12.0	41.0	0.1	3403	chr3R	19136407	exon	Cyp12a4 +	chr3R	19138108	intergenic	not near genes	chr3R	19139810	3` UTR	Ppcs -	chr3R_5_19135001	chr3R_19135001	RAL-181
1645	chr3R	20156705	20156724	chr3R	20165875	20165893	roo	8	9168	6.0	5.0	5.5	1.2	9188	chr3R	20156705	intergenic	not near genes	chr3R	20161299	intergenic	not near genes	chr3R	20165893	intergenic	not near genes	chr3R_8_20160001	chr3R_20160001	RAL-181
1650	chr3R	20266528	20266546	chr3R	20272988	20273006	Burdock	8	6468	0.5	3.0	1.8	2.9	6478	chr3R	20266528	intron	cic +	chr3R	20269767	intron	cic +	chr3R	20273006	intron	cic +	chr3R_8_20265001	chr3R_20265001	RAL-181
1653	chr3R	20331000	20331015	chr3R	20331485	20331501	roo	6	485	3.0	1.0	2.0	2.0	501	chr3R	20331000	intergenic	Sirt2 +	chr3R	20331250	intergenic	Sirt2 +	chr3R	20331501	intergenic	not near genes	chr3R_6_20330001	chr3R_20330001	RAL-181
1667	chr3R	20854474	20854515	chr3R	20859267	20859303	Doc	5	4790	5.5	2.0	3.8	1.0	4829	chr3R	20854474	intron	Ir93a -	chr3R	20856888	intron	Ir93a -	chr3R	20859303	exon	Ir93a -	chr3R_5_20855001	chr3R_20855001	RAL-181
1675	chr3R	21141672	21141707	chr3R	21150153	21150161	Tirant	11	8466	3.0	3.5	3.2	2.6	8489	chr3R	21141672	intron	SNF4Agamma +	chr3R	21145916	intron	SNF4Agamma +	chr3R	21150161	intron	SNF4Agamma +	chr3R_11_21145001	chr3R_21145001	RAL-181
1682	chr3R	21761118	21761155	chr3R	21768510	21768525	mdg1	20	7386	3.5	5.5	4.5	3.6	7407	chr3R	21761118	exon	CG42335 +	chr3R	21764822	intron	CG42335 +	chr3R	21768525	exon	CG42335 +	chr3R_20_21760001	chr3R_21760001	RAL-181
1699	chr3R	22239489	22239521	chr3R	22248549	22248562	roo	5	9052	2.0	0.0	1.0	2.5	9073	chr3R	22239489	intron	SKIP +	chr3R	22244026	intron	SKIP +	chr3R	22248562	intron	SKIP +	chr3R_5_22240001	chr3R_22240001	RAL-181
1703	chr3R	22450539	22450579	chr3R	22453179	22453219	NOF	18	2638	2.0	2.5	2.2	5.6	2680	chr3R	22450539	intron	CG34376 +	chr3R	22451879	intron	CG34376 +	chr3R	22453219	intron	CG34376 +	chr3R_18_22450001	chr3R_22450001	RAL-181
1714	chr3R	22881210	22881225	chr3R	22884905	22884925	Doc	6	3701	2.0	0.5	1.2	2.7	3715	chr3R	22881210	intergenic	not near genes	chr3R	22883068	intergenic	not near genes	chr3R	22884925	intergenic	not near genes	chr3R_6_22880001	chr3R_22880001	RAL-181
1721	chr3R	23558398	23558420	chr3R	23560179	23560201	Bari1	6	1781	4.0	1.5	2.8	1.6	1803	chr3R	23558398	intron	beat-IV +	chr3R	23559300	intron	beat-IV +	chr3R	23560201	intron	beat-IV +	chr3R_6_23555001	chr3R_23555001	RAL-181
1725	chr3R	23684697	23684728	chr3R	23685183	23685212	roo	11	479	3.5	8.5	6.0	1.6	515	chr3R	23684697	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685212	exon	CG18754 +	chr3R_11_23680001	chr3R_23680001	RAL-181
1732	chr3R	24072084	24072117	chr3R	24072522	24072551	jockey	17	436	8.5	8.0	8.2	1.8	467	chr3R	24072084	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072551	intron	4EHP -	chr3R_17_24070001	chr3R_24070001	RAL-181
1733	chr3R	24076919	24076947	chr3R	24078385	24078399	hobo	13	1465	3.5	6.0	4.8	2.2	1480	chr3R	24076919	intron	4EHP -	chr3R	24077659	intron	4EHP -	chr3R	24078399	intron	4EHP -	chr3R_13_24075001	chr3R_24075001	RAL-181
1736	chr3R	24207215	24207246	chr3R	24212291	24212322	flea	12	5074	11.0	5.5	8.2	1.3	5107	chr3R	24207215	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212322	intron	twin -	chr3R_12_24205001	chr3R_24205001	RAL-181
1739	chr3R	24493283	24493310	chr3R	24493512	24493538	BS	12	228	3.5	5.5	4.5	2.2	255	chr3R	24493283	intergenic	not near genes	chr3R	24493410	intergenic	not near genes	chr3R	24493538	intergenic	not near genes	chr3R_12_24490001	chr3R_24490001	RAL-181
1742	chr3R	24730103	24730120	chr3R	24732471	24732483	Doc	6	2371	2.5	2.0	2.2	1.9	2380	chr3R	24730103	intron	tok +	chr3R	24731293	intron	tok +	chr3R	24732483	intron	tok +	chr3R_6_24730001	chr3R_24730001	RAL-181
1745	chr3R	24927125	24927154	chr3R	24931916	24931944	Doc	15	4790	2.5	2.5	2.5	4.3	4819	chr3R	24927125	intergenic	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931944	intergenic	CG11771 +	chr3R_15_24925001	chr3R_24925001	RAL-181
1757	chr3R	25725827	25725859	chr3R	25734987	25735017	roo	4	9160	1.0	1.0	1.0	2.0	9190	chr3R	25725827	intron	LpR2 -	chr3R	25730422	intron	LpR2 -	chr3R	25735017	intron	LpR2 -	chr3R_4_25730001	chr3R_25730001	RAL-181
1762	chr3R	25832702	25832723	chr3R	25841876	25841905	roo	12	9180	3.5	6.0	4.8	2.1	9203	chr3R	25832702	exon	alpha4GT2 +	chr3R	25837304	intron	alpha4GT2 +	chr3R	25841905	exon	alpha4GT2 +	chr3R_12_25835001	chr3R_25835001	RAL-181
1773	chr3R	26376327	26376358	chr3R	26385482	26385514	roo	13	9157	5.0	0.5	2.8	3.4	9187	chr3R	26376327	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385514	intergenic	not near genes	chr3R_13_26380001	chr3R_26380001	RAL-181
1779	chr3R	26510527	26510535	chr3R	26519582	26519590	roo	5	9055	1.5	4.0	2.8	1.3	9063	chr3R	26510527	intron	plum -	chr3R	26515058	intron	plum -	chr3R	26519590	intron,5` UTR	plum -,CR45226 +	chr3R_5_26515001	chr3R_26515001	RAL-181
1782	chr3R	26642727	26642756	chr3R	26643120	26643150	jockey	10	393	6.5	3.5	5.0	1.7	423	chr3R	26642727	intergenic	not near genes	chr3R	26642938	intergenic	not near genes	chr3R	26643150	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	RAL-181
1786	chr3R	26810552	26810584	chr3R	26811037	26811069	roo	17	482	6.0	7.0	6.5	2.3	517	chr3R	26810552	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811069	intron	Tl +	chr3R_17_26810001	chr3R_26810001	RAL-181
1787	chr3R	27007410	27007435	chr3R	27016545	27016570	roo	5	9135	1.5	3.5	2.5	1.4	9160	chr3R	27007410	intron	RYa-R +	chr3R	27011990	intron	RYa-R +	chr3R	27016570	intron	RYa-R +	chr3R_5_27010001	chr3R_27010001	RAL-181
1793	chr3R	27140516	27140539	chr3R	27148126	27148149	412	10	7610	8.0	8.0	8.0	1.1	7633	chr3R	27140516	intron	CG6051 -	chr3R	27144332	intron	CG6051 -	chr3R	27148149	intron	CG6051 -	chr3R_10_27140001	chr3R_27140001	RAL-181
1794	chr3R	27342791	27342824	chr3R	27351372	27351405	Tirant	12	8581	3.5	3.5	3.5	2.7	8614	chr3R	27342791	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_12_27345001	chr3R_27345001	RAL-181
1803	chr3R	27725571	27725595	chr3R	27731001	27731037	I-element	7	5440	5.5	1.0	3.2	1.7	5466	chr3R	27725571	intergenic	not near genes	chr3R	27728304	intergenic	not near genes	chr3R	27731037	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-181
1810	chr3R	27856759	27856785	chr3R	27858241	27858261	hopper2	12	1480	8.0	4.0	6.0	1.7	1502	chr3R	27856759	intron	CG34353 -	chr3R	27857510	intron	CG34353 -	chr3R	27858261	intron	CG34353 -	chr3R_12_27855001	chr3R_27855001	RAL-181
1811	chr3R	27862954	27862986	chr3R	27868259	27868285	Transpac	8	5302	3.0	1.5	2.2	2.5	5331	chr3R	27862954	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868285	intron	CG34353 -	chr3R_8_27865001	chr3R_27865001	RAL-181
1812	chr3R	27875699	27875722	chr3R	27882754	27882767	297	8	7052	6.5	8.0	7.2	1.0	7068	chr3R	27875699	intron	CG34353 -	chr3R	27879233	intron	CG34353 -	chr3R	27882767	intron	CG34353 -	chr3R_8_27875001	chr3R_27875001	RAL-181
1814	chr3R	28068490	28068527	chr3R	28073932	28073969	I-element	15	5439	3.5	3.5	3.5	3.3	5479	chr3R	28068490	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073969	intron	CG34362 +	chr3R_15_28070001	chr3R_28070001	RAL-181
1819	chr3R	28173669	28173702	chr3R	28181099	28181129	mdg1	11	7429	4.5	1.0	2.8	2.9	7460	chr3R	28173669	intron	CG34354 +	chr3R	28177399	intron	CG34354 +	chr3R	28181129	intron	CG34354 +	chr3R_11_28175001	chr3R_28175001	RAL-181
1821	chr3R	28253336	28253370	chr3R	28255846	28255879	jockey	18	2508	7.5	6.0	6.8	2.3	2543	chr3R	28253336	intergenic	not near genes	chr3R	28254608	intergenic	not near genes	chr3R	28255879	intergenic	not near genes	chr3R_18_28250001	chr3R_28250001	RAL-181
1822	chr3R	28302111	28302134	chr3R	28302545	28302573	jockey	6	438	2.0	6.0	4.0	1.2	462	chr3R	28302111	intergenic	not near genes	chr3R	28302342	intergenic	not near genes	chr3R	28302573	intergenic	not near genes	chr3R_6_28300001	chr3R_28300001	RAL-181
1826	chr3R	28758283	28758313	chr3R	28763900	28763919	roo	6	5614	5.5	0.0	2.8	1.6	5636	chr3R	28758283	intergenic	aqrs -	chr3R	28761101	intergenic	not near genes	chr3R	28763919	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	RAL-181
1827	chr3R	28792882	28792903	chr3R	28797972	28797998	jockey	8	5093	6.0	7.0	6.5	1.1	5116	chr3R	28792882	intergenic	not near genes	chr3R	28795440	intergenic	not near genes	chr3R	28797998	intergenic	not near genes	chr3R_8_28795001	chr3R_28795001	RAL-181
1834	chr3R	29079398	29079404	chr3R	29080770	29080776	NOF	6	1370	0.0	3.0	1.5	2.4	1378	chr3R	29079398	intron	CG11873 +	chr3R	29080087	intron	CG11873 +	chr3R	29080776	intron	CG11873 +	chr3R_6_29080001	chr3R_29080001	RAL-181
1840	chr3R	29406612	29406648	chr3R	29407898	29407934	jockey	12	1283	6.5	3.0	4.8	2.1	1322	chr3R	29406612	intron	Ptp99A +	chr3R	29407273	intron	Ptp99A +	chr3R	29407934	intron	Ptp99A +	chr3R_12_29405001	chr3R_29405001	RAL-181
1846	chr3R	29738265	29738298	chr3R	29739732	29739743	hobo	11	1464	5.0	8.0	6.5	1.5	1478	chr3R	29738265	intergenic	CG1969 +,CG7598 +	chr3R	29739004	intron	CG1969 +	chr3R	29739743	5` UTR	CG1969 +	chr3R_11_29735001	chr3R_29735001	RAL-181
1848	chr3R	29882021	29882048	chr3R	29891177	29891204	roo	14	9154	3.0	7.5	5.2	2.3	9183	chr3R	29882021	intron	CG31038 +	chr3R	29886612	intron	CG31038 +	chr3R	29891204	intron	CG31038 +	chr3R_14_29885001	chr3R_29885001	RAL-181
1853	chr3R	30084865	30084879	chr3R	30086329	30086346	hobo	12	1466	1.0	10.0	5.5	1.8	1481	chr3R	30084865	intron	sima +	chr3R	30085606	intron	sima +	chr3R	30086346	intron	sima +	chr3R_12_30085001	chr3R_30085001	RAL-181
1857	chr3R	30317326	30317356	chr3R	30324918	30324948	roo	9	7588	0.0	4.5	2.2	2.8	7622	chr3R	30317326	intron	hdc +	chr3R	30321137	intron	hdc +	chr3R	30324948	intron	hdc +	chr3R_9_30320001	chr3R_30320001	RAL-181
1858	chr3R	30396220	30396249	chr3R	30404483	30404495	roo	11	8263	2.5	5.5	4.0	2.2	8275	chr3R	30396220	intergenic	not near genes	chr3R	30400358	intergenic	not near genes	chr3R	30404495	5` UTR	CR45570 +	chr3R_11_30400001	chr3R_30400001	RAL-181
1862	chr3R	30480475	30480513	chr3R	30482940	30482975	jockey	15	2466	3.5	7.0	5.2	2.4	2500	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481725	intron	PH4alphaEFB +	chr3R	30482975	intron	PH4alphaEFB +	chr3R_15_30480001	chr3R_30480001	RAL-181
1868	chr3R	30818819	30818841	chr3R	30820383	30820406	1360	5	1564	3.5	4.0	3.8	1.0	1587	chr3R	30818819	intron	cindr +	chr3R	30819612	intron	cindr +	chr3R	30820406	intron	cindr +	chr3R_5_30815001	chr3R_30815001	RAL-181
1869	chr3R	31074230	31074260	chr3R	31081828	31081858	springer	11	7596	4.0	5.5	4.8	1.9	7628	chr3R	31074230	intron	Sox100B +	chr3R	31078044	intron	Sox100B +	chr3R	31081858	intron	Sox100B +	chr3R_11_31075001	chr3R_31075001	RAL-181
1874	chr3R	31279374	31279398	chr3R	31285565	31285585	diver	10	6187	8.0	3.0	5.5	1.5	6211	chr3R	31279374	intergenic	not near genes	chr3R	31282480	intergenic	not near genes	chr3R	31285585	intergenic	not near genes	chr3R_10_31280001	chr3R_31280001	RAL-181
1878	chr3R	31413090	31413121	chr3R	31418290	31418305	copia	10	5196	6.0	3.0	4.5	1.8	5215	chr3R	31413090	intron	Gprk2 +	chr3R	31415698	intron	Gprk2 +	chr3R	31418305	intron	Gprk2 +	chr3R_10_31415001	chr3R_31415001	RAL-181
1884	chr3R	31691531	31691549	chr3R	31696297	31696314	Doc	7	4765	6.0	9.0	7.5	0.8	4783	chr3R	31691531	intergenic	not near genes	chr3R	31693922	intergenic	not near genes	chr3R	31696314	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-181
1885	chr3R	31691556	31691561	chr3R	31696296	31696327	Doc	9	4755	4.0	9.0	6.5	1.2	4771	chr3R	31691556	intergenic	not near genes	chr3R	31693942	intergenic	not near genes	chr3R	31696327	intergenic	not near genes	chr3R_9_31690001	chr3R_31690001	RAL-181
1889	chr3R	31997990	31998020	chr3R	32005460	32005480	blood	15	7467	5.0	4.0	4.5	2.7	7490	chr3R	31997990	intron	heph -	chr3R	32001735	intron	heph -	chr3R	32005480	intron	heph -	chr3R_15_32000001	chr3R_32000001	RAL-181
1891	chr4	76501	76518	chr4	81944	81959	I-element	5	5442	7.5	2.0	4.8	0.9	5458	chr4	76501	intron	pan +	chr4	79230	intron	pan +	chr4	81959	intron	pan +	chr4_5_75001	chr4_75001	RAL-181
1892	chr4	671610	671635	chr4	680187	680216	Tirant	14	8581	3.0	6.0	4.5	2.5	8606	chr4	671610	intron	CG11360 +	chr4	675913	intron	CG11360 +	chr4	680216	intron	CG11360 +	chr4_14_675001	chr4_675001	RAL-181
1894	chrX	295857	295877	chrX	303476	303479	412	6	7615	3.5	4.5	4.0	1.2	7622	chrX	295857	intron	CG3777 +	chrX	299668	intron	CG3777 +	chrX	303479	intron	CG3777 +	chrX_6_295001	chrX_295001	RAL-181
1895	chrX	428426	428451	chrX	434611	434635	3S18	5	6185	8.5	2.5	5.5	0.8	6209	chrX	428426	intron	CG32816 -	chrX	431530	intron	CG32816 -	chrX	434635	intron	CG32816 -	chrX_5_430001	chrX_430001	RAL-181
1897	chrX	551435	551454	chrX	558988	559011	412	4	7552	6.5	2.0	4.2	0.8	7576	chrX	551435	intron	Appl +	chrX	555223	intron	Appl +	chrX	559011	intron	Appl +	chrX_4_555001	chrX_555001	RAL-181
1904	chrX	827606	827634	chrX	835397	835420	roo	5	7789	6.5	0.0	3.2	1.2	7814	chrX	827606	intron	CG43867 -	chrX	831513	intron	CG43867 -	chrX	835420	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-181
1907	chrX	906703	906734	chrX	908492	908519	S-element	19	1787	3.5	8.5	6.0	2.7	1816	chrX	906703	intron	CG43867 -	chrX	907611	intron	CG43867 -	chrX	908519	intron	CG43867 -	chrX_19_905001	chrX_905001	RAL-181
1912	chrX	1357776	1357807	chrX	1367946	1367973	Doc	10	10169	4.5	4.0	4.2	1.9	10197	chrX	1357776	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367973	intergenic	not near genes	chrX_10_1360001	chrX_1360001	RAL-181
1913	chrX	1518039	1518076	chrX	1523441	1523477	jockey	11	5401	2.5	7.0	4.8	1.9	5438	chrX	1518039	intergenic	inc +	chrX	1520758	intergenic	not near genes	chrX	1523477	intergenic	not near genes	chrX_11_1520001	chrX_1520001	RAL-181
1915	chrX	1627976	1627997	chrX	1635444	1635465	gtwin	6	7467	6.0	1.5	3.8	1.2	7489	chrX	1627976	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635465	intron,intron	Mur2B -,br +	chrX_6_1630001	chrX_1630001	RAL-181
1917	chrX	1954892	1954916	chrX	1962825	1962837	Stalker2	9	7927	3.0	3.0	3.0	2.2	7945	chrX	1954892	intron	Hr4 +	chrX	1958864	intron	Hr4 +	chrX	1962837	intron	Hr4 +	chrX_9_1955001	chrX_1955001	RAL-181
1919	chrX	2399836	2399845	chrX	2408189	2408189	roo	4	8350	10.5	3.0	6.8	0.5	8353	chrX	2399836	intergenic	not near genes	chrX	2404012	intergenic	not near genes	chrX	2408189	intergenic	not near genes	chrX_4_2400001	chrX_2400001	RAL-181
1920	chrX	2399847	2399866	chrX	2408188	2408204	roo	4	8344	5.0	3.0	4.0	0.8	8357	chrX	2399847	intergenic	not near genes	chrX	2404026	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_4_2400001	chrX_2400001	RAL-181
1922	chrX	2664384	2664418	chrX	2665529	2665564	1360	10	1143	1.0	2.0	1.5	4.0	1180	chrX	2664384	intron	sgg +	chrX	2664974	intron	sgg +	chrX	2665564	intron	sgg +	chrX_10_2660001	chrX_2660001	RAL-181
1926	chrX	3075635	3075663	chrX	3080941	3080969	Transpac	11	5304	2.5	5.5	4.0	2.2	5334	chrX	3075635	intron	kirre +	chrX	3078302	intron	kirre +	chrX	3080969	intron	kirre +	chrX_11_3075001	chrX_3075001	RAL-181
1930	chrX	3415030	3415051	chrX	3421207	3421215	3S18	6	6180	1.5	1.5	1.5	2.4	6185	chrX	3415030	intron,intron	CR44999 +,CG12535 -	chrX	3418122	intron,intron	CR44999 +,CG12535 -	chrX	3421215	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-181
1932	chrX	3493092	3493120	chrX	3502251	3502255	roo	7	9155	5.0	1.5	3.2	1.7	9163	chrX	3493092	intron,intron	CR44999 +,Gas8 -	chrX	3497674	intron,intron	CR44999 +,Gas8 -	chrX	3502255	intron,intron	CR44999 +,Gas8 -	chrX_7_3495001	chrX_3495001	RAL-181
1936	chrX	3597550	3597582	chrX	3619718	3619748	roo	15	22166	4.0	5.5	4.8	2.6	22198	chrX	3597550	intron	AstA-R1 +	chrX	3608649	intron	AstA-R1 +	chrX	3619748	intron	AstA-R1 +	chrX_15_3605001	chrX_3605001	RAL-181
1939	chrX	3726766	3726794	chrX	3730163	3730191	NOF	6	3396	4.5	2.0	3.2	1.4	3425	chrX	3726766	intron	tlk +	chrX	3728478	intron	tlk +	chrX	3730191	intron	tlk +	chrX_6_3725001	chrX_3725001	RAL-181
1941	chrX	3842328	3842353	chrX	3842569	3842593	pogo	12	241	3.5	3.5	3.5	2.7	265	chrX	3842328	intron	ec +	chrX	3842460	intron	ec +	chrX	3842593	intron	ec +	chrX_12_3840001	chrX_3840001	RAL-181
1945	chrX	3986861	3986896	chrX	3994494	3994521	412	16	7630	3.0	5.5	4.2	3.1	7660	chrX	3986861	intergenic	not near genes	chrX	3990691	intergenic	not near genes	chrX	3994521	intergenic	not near genes	chrX_16_3990001	chrX_3990001	RAL-181
1950	chrX	4157894	4157915	chrX	4164929	4164935	297	5	7032	4.0	1.5	2.8	1.3	7041	chrX	4157894	intron	Fas2 -	chrX	4161414	intron	Fas2 -	chrX	4164935	intron	Fas2 -	chrX_5_4160001	chrX_4160001	RAL-181
1954	chrX	4731814	4731830	chrX	4736907	4736917	jockey	9	5091	12.5	7.5	10.0	0.8	5103	chrX	4731814	intergenic	not near genes	chrX	4734366	intergenic	not near genes	chrX	4736917	intergenic	not near genes	chrX_9_4730001	chrX_4730001	RAL-181
1955	chrX	4763259	4763285	chrX	4763740	4763773	Stalker4	12	487	5.0	5.5	5.2	1.9	514	chrX	4763259	intergenic	not near genes	chrX	4763516	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_12_4760001	chrX_4760001	RAL-181
1956	chrX	4792381	4792409	chrX	4792813	4792842	jockey	8	432	5.5	7.5	6.5	1.1	461	chrX	4792381	intergenic	not near genes	chrX	4792612	intergenic	not near genes	chrX	4792842	intergenic	not near genes	chrX_8_4790001	chrX_4790001	RAL-181
1957	chrX	4827972	4827989	chrX	4835343	4835358	Stalker4	5	7369	6.5	5.5	6.0	0.7	7386	chrX	4827972	intergenic	not near genes	chrX	4831665	intergenic	not near genes	chrX	4835358	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-181
1958	chrX	4827990	4827997	chrX	4835338	4835356	Stalker4	8	7354	4.5	2.5	3.5	1.8	7366	chrX	4827990	intergenic	not near genes	chrX	4831673	intergenic	not near genes	chrX	4835356	intergenic	not near genes	chrX_8_4830001	chrX_4830001	RAL-181
1962	chrX	4990046	4990072	chrX	4997260	4997281	roo	6	7212	2.0	2.5	2.2	1.9	7235	chrX	4990046	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997281	intron	CR44833 -	chrX_6_4990001	chrX_4990001	RAL-181
1964	chrX	5096274	5096306	chrX	5103839	5103870	springer	8	7565	4.0	4.5	4.2	1.5	7596	chrX	5096274	intron,intron	CG15465 +,rg +	chrX	5100072	intron,intron	CG15465 +,rg +	chrX	5103870	intron,intron	CG15465 +,rg +	chrX_8_5100001	chrX_5100001	RAL-181
1969	chrX	5338707	5338736	chrX	5339960	5339989	jockey	6	1253	3.5	4.5	4.0	1.2	1282	chrX	5338707	intergenic	not near genes	chrX	5339348	intergenic	not near genes	chrX	5339989	intergenic	SK +	chrX_6_5335001	chrX_5335001	RAL-181
1975	chrX	5883813	5883837	chrX	5884050	5884078	pogo	10	238	4.0	2.5	3.2	2.4	265	chrX	5883813	intron	CR45668 -	chrX	5883946	intron	CR45668 -	chrX	5884078	intron	CR45668 -	chrX_10_5880001	chrX_5880001	RAL-181
1976	chrX	5884160	5884187	chrX	5884401	5884428	pogo	8	241	7.0	0.5	3.8	1.7	268	chrX	5884160	intron	CR45668 -	chrX	5884294	intron	CR45668 -	chrX	5884428	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-181
1978	chrX	6171594	6171617	chrX	6179019	6179037	Quasimodo	7	7430	4.0	2.0	3.0	1.8	7443	chrX	6171594	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179037	intron	Ca-alpha1T -	chrX_7_6175001	chrX_6175001	RAL-181
1979	chrX	6335222	6335237	chrX	6337732	6337747	Tirant	9	2510	0.0	5.5	2.8	2.4	2525	chrX	6335222	intergenic	not near genes	chrX	6336484	intergenic	not near genes	chrX	6337747	intergenic	CG3842 +	chrX_9_6335001	chrX_6335001	RAL-181
1980	chrX	6392869	6392904	chrX	6397634	6397669	Doc	9	4765	4.0	8.0	6.0	1.3	4800	chrX	6392869	intergenic	not near genes	chrX	6395269	intergenic	not near genes	chrX	6397669	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-181
1981	chrX	6562818	6562851	chrX	6571300	6571332	Tirant	11	8479	3.0	4.0	3.5	2.4	8514	chrX	6562818	intron	CG34417 +	chrX	6567075	intron	CG34417 +	chrX	6571332	intron	CG34417 +	chrX_11_6565001	chrX_6565001	RAL-181
1985	chrX	7023602	7023633	chrX	7030992	7031022	Tabor	15	7387	6.5	4.5	5.5	2.3	7420	chrX	7023602	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031022	intron	CG12541 -	chrX_15_7025001	chrX_7025001	RAL-181
1986	chrX	7125244	7125279	chrX	7134403	7134438	roo	11	9159	2.0	1.5	1.8	3.9	9194	chrX	7125244	intergenic	not near genes	chrX	7129841	intergenic	not near genes	chrX	7134438	intergenic	not near genes	chrX_11_7125001	chrX_7125001	RAL-181
1993	chrX	7702910	7702928	chrX	7703341	7703366	jockey	8	436	8.0	4.0	6.0	1.1	456	chrX	7702910	intron	CHES-1-like -	chrX	7703138	intron	CHES-1-like -	chrX	7703366	intron	CHES-1-like -	chrX_8_7700001	chrX_7700001	RAL-181
1994	chrX	7702930	7702936	chrX	7703340	7703360	jockey	4	422	4.0	4.0	4.0	0.8	430	chrX	7702930	intron	CHES-1-like -	chrX	7703145	intron	CHES-1-like -	chrX	7703360	intron	CHES-1-like -	chrX_4_7700001	chrX_7700001	RAL-181
1996	chrX	7784238	7784243	chrX	7784535	7784545	jockey	6	301	2.0	5.0	3.5	1.3	307	chrX	7784238	intergenic	not near genes	chrX	7784392	intergenic	not near genes	chrX	7784545	intergenic	not near genes	chrX_6_7780001	chrX_7780001	RAL-181
1998	chrX	7845724	7845736	chrX	7847215	7847227	hopper2	7	1490	7.5	2.0	4.8	1.2	1503	chrX	7845724	intergenic	not near genes	chrX	7846476	intergenic	not near genes	chrX	7847227	intergenic	not near genes	chrX_7_7845001	chrX_7845001	RAL-181
1999	chrX	7845737	7845753	chrX	7847214	7847244	hopper2	5	1487	4.0	2.0	3.0	1.2	1507	chrX	7845737	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847244	intergenic	not near genes	chrX_5_7845001	chrX_7845001	RAL-181
2004	chrX	8364851	8364878	chrX	8365242	8365273	BS	7	394	0.0	3.0	1.5	2.8	422	chrX	8364851	intron	nAChRalpha3 -	chrX	8365062	intron	nAChRalpha3 -	chrX	8365273	intron	nAChRalpha3 -	chrX_7_8365001	chrX_8365001	RAL-181
2007	chrX	8922326	8922362	chrX	8922759	8922796	jockey	12	428	5.0	6.0	5.5	1.8	470	chrX	8922326	intron	rdgA +	chrX	8922561	intron	rdgA +	chrX	8922796	intron	rdgA +	chrX_12_8920001	chrX_8920001	RAL-181
2008	chrX	8948765	8948791	chrX	8956275	8956301	roo	9	7509	2.5	2.5	2.5	2.6	7536	chrX	8948765	intron	rdgA +	chrX	8952533	intron	rdgA +	chrX	8956301	intron	rdgA +	chrX_9_8950001	chrX_8950001	RAL-181
2013	chrX	9508132	9508166	chrX	9509650	9509684	jockey	8	1517	6.0	3.5	4.8	1.4	1552	chrX	9508132	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509684	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RAL-181
2016	chrX	9575799	9575823	chrX	9576120	9576145	mdg3	18	321	4.5	8.5	6.5	2.4	346	chrX	9575799	intron,exon	CG32699 -,CG42395 -	chrX	9575972	intron,intron	CG32699 -,CG42395 -	chrX	9576145	intron,5` UTR	CG32699 -,CG42395 -	chrX_18_9575001	chrX_9575001	RAL-181
2023	chrX	10550855	10550887	chrX	10552322	10552350	hobo	12	1462	3.5	5.5	4.5	2.2	1495	chrX	10550855	intron	spri -	chrX	10551602	intron	spri -	chrX	10552350	intron	spri -	chrX_12_10550001	chrX_10550001	RAL-181
2024	chrX	10686050	10686078	chrX	10691187	10691215	roo	7	5135	5.5	3.5	4.5	1.3	5165	chrX	10686050	intron	X11Lbeta +	chrX	10688632	intron	X11Lbeta +	chrX	10691215	intron	X11Lbeta +	chrX_7_10685001	chrX_10685001	RAL-181
2025	chrX	10772678	10772694	chrX	10772761	10772773	Tirant	6	81	4.0	2.0	3.0	1.5	95	chrX	10772678	intron	CG15211 +	chrX	10772726	intron	CG15211 +	chrX	10772773	intron	CG15211 +	chrX_6_10770001	chrX_10770001	RAL-181
2026	chrX	11184256	11184284	chrX	11189332	11189360	flea	5	5075	2.0	2.5	2.2	1.6	5104	chrX	11184256	intergenic	not near genes	chrX	11186808	intergenic	not near genes	chrX	11189360	intergenic	not near genes	chrX_5_11185001	chrX_11185001	RAL-181
2028	chrX	11268571	11268591	chrX	11270053	11270074	hopper2	9	1486	5.0	1.0	3.0	2.2	1503	chrX	11268571	intron	CG44422 -	chrX	11269322	intron	CG44422 -	chrX	11270074	intron	CG44422 -	chrX_9_11265001	chrX_11265001	RAL-181
2030	chrX	11312068	11312087	chrX	11319417	11319440	Stalker2	8	7349	3.5	4.5	4.0	1.6	7372	chrX	11312068	intergenic	not near genes	chrX	11315754	intergenic	not near genes	chrX	11319440	intergenic	not near genes	chrX_8_11315001	chrX_11315001	RAL-181
2031	chrX	11633430	11633447	chrX	11640484	11640496	297	4	7050	4.0	4.0	4.0	0.8	7066	chrX	11633430	intron	Ptp10D +	chrX	11636963	intron	Ptp10D +	chrX	11640496	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-181
2034	chrX	12168132	12168158	chrX	12173574	12173600	I-element	5	5440	2.5	3.0	2.8	1.3	5468	chrX	12168132	intron	Ten-a +	chrX	12170866	intron	Ten-a +	chrX	12173600	intron	Ten-a +	chrX_5_12170001	chrX_12170001	RAL-181
2037	chrX	12301958	12301989	chrX	12303262	12303294	X-element	14	1304	1.0	4.5	2.8	3.7	1336	chrX	12301958	intron	Ten-a +	chrX	12302626	intron	Ten-a +	chrX	12303294	intron	Ten-a +	chrX_14_12300001	chrX_12300001	RAL-181
2049	chrX	13401503	13401517	chrX	13401845	13401869	jockey	4	350	2.0	1.5	1.8	1.4	366	chrX	13401503	intergenic	CG1673 +,CG12725 -	chrX	13401686	intergenic	CG12725 -,CG1673 +	chrX	13401869	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	RAL-181
2050	chrX	13403022	13403043	chrX	13403148	13403167	X-element	8	126	2.5	4.0	3.2	1.9	145	chrX	13403022	intergenic	CG12725 -	chrX	13403094	intergenic	CG12725 -	chrX	13403167	intergenic	CG12725 -	chrX_8_13400001	chrX_13400001	RAL-181
2053	chrX	13937984	13938002	chrX	13941255	13941273	I-element	9	3270	4.0	3.5	3.8	1.9	3289	chrX	13937984	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941273	intron	mamo -	chrX_9_13935001	chrX_13935001	RAL-181
2055	chrX	14105026	14105043	chrX	14114177	14114190	roo	4	9146	4.0	6.5	5.2	0.6	9164	chrX	14105026	intergenic	not near genes	chrX	14109608	intergenic	not near genes	chrX	14114190	5` UTR	CR44657 +	chrX_4_14105001	chrX_14105001	RAL-181
2056	chrX	14105046	14105053	chrX	14114174	14114203	roo	5	9141	2.5	5.5	4.0	1.0	9157	chrX	14105046	intergenic	not near genes	chrX	14109624	intergenic	not near genes	chrX	14114203	5` UTR	CR44657 +	chrX_5_14105001	chrX_14105001	RAL-181
2058	chrX	14157595	14157625	chrX	14163249	14163275	297	7	5655	2.5	0.5	1.5	2.8	5680	chrX	14157595	intergenic	not near genes	chrX	14160435	intergenic	not near genes	chrX	14163275	intergenic	not near genes	chrX_7_14160001	chrX_14160001	RAL-181
2061	chrX	14416313	14416340	chrX	14421075	14421106	F-element	6	4762	1.5	0.5	1.0	3.0	4793	chrX	14416313	intron	dpr8 +	chrX	14418710	intron	dpr8 +	chrX	14421106	intron	dpr8 +	chrX_6_14415001	chrX_14415001	RAL-181
2064	chrX	14636458	14636490	chrX	14641899	14641931	I-element	15	5434	5.0	2.0	3.5	3.3	5473	chrX	14636458	intron	NetA -	chrX	14639194	intron	NetA -	chrX	14641931	intron	NetA -	chrX_15_14635001	chrX_14635001	RAL-181
2067	chrX	14818771	14818793	chrX	14823972	14823981	copia	7	5200	5.0	4.5	4.8	1.2	5210	chrX	14818771	intron	rut -	chrX	14821376	intron	rut -	chrX	14823981	intron	rut -	chrX_7_14820001	chrX_14820001	RAL-181
2074	chrX	15273718	15273739	chrX	15274868	15274871	1360	4	1153	3.0	3.0	3.0	1.0	1153	chrX	15273718	intergenic	not near genes	chrX	15274294	intergenic	not near genes	chrX	15274871	intergenic	not near genes	chrX_4_15270001	chrX_15270001	RAL-181
2075	chrX	15413051	15413085	chrX	15417350	15417387	Juan	13	4299	6.5	3.0	4.8	2.2	4336	chrX	15413051	intron	Cngl -	chrX	15415219	intron	Cngl -	chrX	15417387	intron	Cngl -	chrX_13_15415001	chrX_15415001	RAL-181
2076	chrX	15435689	15435705	chrX	15436122	15436138	rover	6	433	0.5	8.5	4.5	1.1	449	chrX	15435689	intron	Cngl -	chrX	15435914	intron	Cngl -	chrX	15436138	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-181
2085	chrX	16492644	16492673	chrX	16498221	16498250	mdg3	9	5577	4.0	4.0	4.0	1.8	5606	chrX	16492644	intron	para -	chrX	16495447	intron	para -	chrX	16498250	intron	para -	chrX_9_16495001	chrX_16495001	RAL-181
2090	chrX	16936007	16936026	chrX	16936423	16936444	jockey	5	417	0.0	2.5	1.2	2.3	437	chrX	16936007	intron	CG4928 +	chrX	16936226	intron	CG4928 +	chrX	16936444	intron	CG4928 +	chrX_5_16935001	chrX_16935001	RAL-181
2097	chrX	17556952	17556970	chrX	17557445	17557457	mdg1	8	492	4.0	4.0	4.0	1.6	505	chrX	17556952	intron	CG43658 -	chrX	17557204	intron	CG43658 -	chrX	17557457	intron	CG43658 -	chrX_8_17555001	chrX_17555001	RAL-181
2111	chrX	19357008	19357018	chrX	19358435	19358458	NOF	4	1435	2.0	0.5	1.2	1.8	1450	chrX	19357008	intron	kek5 +	chrX	19357733	intron	kek5 +	chrX	19358458	intron	kek5 +	chrX_4_19355001	chrX_19355001	RAL-181
2112	chrX	19380155	19380179	chrX	19380396	19380419	pogo	12	239	6.0	2.0	4.0	2.4	264	chrX	19380155	intron	kek5 +	chrX	19380287	intron	kek5 +	chrX	19380419	intron	kek5 +	chrX_12_19380001	chrX_19380001	RAL-181
2113	chrX	19472121	19472149	chrX	19472690	19472718	jockey	11	568	5.0	9.0	7.0	1.4	597	chrX	19472121	intergenic	kek5 +	chrX	19472420	intergenic	not near genes	chrX	19472718	intergenic	not near genes	chrX_11_19470001	chrX_19470001	RAL-181
2121	chrX	19710074	19710101	chrX	19711858	19711880	S-element	14	1782	3.0	4.0	3.5	3.1	1806	chrX	19710074	intron	meso18E -	chrX	19710977	intron	meso18E -	chrX	19711880	intron	meso18E -	chrX_14_19710001	chrX_19710001	RAL-181
2134	chrX	20377325	20377333	chrX	20378792	20378798	hobo	6	1467	9.5	6.0	7.8	0.7	1473	chrX	20377325	intergenic	not near genes	chrX	20378062	intergenic	not near genes	chrX	20378798	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-181
2135	chrX	20377336	20377342	chrX	20378789	20378809	hobo	5	1464	8.0	6.0	7.0	0.6	1473	chrX	20377336	intergenic	not near genes	chrX	20378072	intergenic	not near genes	chrX	20378809	intergenic	not near genes	chrX_5_20375001	chrX_20375001	RAL-181
2136	chrX	20377343	20377350	chrX	20378782	20378808	hobo	4	1454	6.5	3.5	5.0	0.7	1465	chrX	20377343	intergenic	not near genes	chrX	20378076	intergenic	not near genes	chrX	20378808	intergenic	not near genes	chrX_4_20375001	chrX_20375001	RAL-181
2142	chrX	20504127	20504158	chrX	20505646	20505678	transib2	13	1518	3.0	3.0	3.0	3.2	1551	chrX	20504127	intron	RhoGAP19D -	chrX	20504902	intron	RhoGAP19D -	chrX	20505678	intron	RhoGAP19D -	chrX_13_20500001	chrX_20500001	RAL-181
2145	chrX	20836724	20836759	chrX	20844326	20844361	roo	5	7601	1.0	3.5	2.2	1.6	7637	chrX	20836724	intron	shakB -	chrX	20840542	intron	shakB -	chrX	20844361	intron	shakB -	chrX_5_20840001	chrX_20840001	RAL-181
2146	chrX	20940719	20940755	chrX	20942187	20942217	hobo	18	1467	6.0	4.0	5.0	3.0	1498	chrX	20940719	intergenic	not near genes	chrX	20941468	intergenic	not near genes	chrX	20942217	intergenic	not near genes	chrX_18_20940001	chrX_20940001	RAL-181
2149	chrX	21086131	21086166	chrX	21087160	21087180	jockey	13	1026	3.5	2.5	3.0	3.2	1049	chrX	21086131	intergenic	not near genes	chrX	21086656	intergenic	not near genes	chrX	21087180	intergenic	not near genes	chrX_13_21085001	chrX_21085001	RAL-181
2152	chrX	21254651	21254670	chrX	21255567	21255585	hopper2	5	915	4.0	0.0	2.0	1.7	934	chrX	21254651	intron	CG32521 -	chrX	21255118	intron	CG32521 -	chrX	21255585	intron	CG32521 -	chrX_5_21255001	chrX_21255001	RAL-181
2154	chrX	21458703	21458723	chrX	21464139	21464159	Ivk	5	5436	2.5	4.0	3.2	1.2	5456	chrX	21458703	intergenic	not near genes	chrX	21461431	intergenic	not near genes	chrX	21464159	intergenic	not near genes	chrX_5_21460001	chrX_21460001	RAL-181
2160	chrX	22564559	22564578	chrX	22575131	22575150	jockey	9	10573	16.5	10.5	13.5	0.6	10591	chrX	22564559	intergenic	not near genes	chrX	22569854	intergenic	not near genes	chrX	22575150	intergenic	not near genes	chrX_9_22565001	chrX_22565001	RAL-181
2162	chrX	22697498	22697523	chrX	22701795	22701820	Juan	11	4296	2.0	5.0	3.5	2.4	4322	chrX	22697498	intron	CR44997 +	chrX	22699659	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_11_22695001	chrX_22695001	RAL-181
2163	chrX	22771516	22771537	chrX	22774807	22774821	297	8	3290	3.5	6.5	5.0	1.3	3305	chrX	22771516	intron	CR44997 +	chrX	22773168	intron	CR44997 +	chrX	22774821	intron	CR44997 +	chrX_8_22770001	chrX_22770001	RAL-181
2164	chrX	22967419	22967529	chrX	23154570	23154688	diver	4	187166	2.5	6.5	4.5	0.7	187269	chrX	22967419	intergenic	not near genes	chrX	23061054	intergenic	not near genes	chrX	23154688	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-181
2165	chrX	22987101	22987134	chrX	22989760	22989793	Burdock	4	2653	0.5	0.5	0.5	2.7	2692	chrX	22987101	intron,intron	stnA -,stnB -	chrX	22988447	intron,intron	stnA -,stnB -	chrX	22989793	intron,intron	stnA -,stnB -	chrX_4_22985001	chrX_22985001	RAL-181
2167	chrX	22996320	22996339	chrX	23003550	23003571	roo	7	7232	4.5	4.5	4.5	1.3	7251	chrX	22996320	intron,intron	stnA -,stnB -	chrX	22999946	intron,intron	stnA -,stnB -	chrX	23003571	intron,intron	stnA -,stnB -	chrX_7_22995001	chrX_22995001	RAL-181
2168	chrX	23036383	23036411	chrX	23037782	23037811	pogo	7	1400	2.0	1.0	1.5	2.8	1428	chrX	23036383	intron	CG12061 +	chrX	23037097	intron	CG12061 +	chrX	23037811	intron	CG12061 +	chrX_7_23035001	chrX_23035001	RAL-181