SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47489 chr2L 52564 52593 jockey 15 5102 12.5 7.5 10.0 1.4 5134 chr2L 47459 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_15_50001 chr2L_50001 RAL-181 2 chr2L 325134 325155 chr2L 325205 325232 8 75 7.0 8.0 7.5 0.9 98 chr2L 325134 intron Plc21C + chr2L 325183 intron Plc21C + chr2L 325232 intron Plc21C + chr2L_8_325001 chr2L_325001 RAL-181 3 chr2L 347888 347914 chr2L 355388 355407 blood 7 7498 4.5 3.0 3.8 1.5 7519 chr2L 347888 3` UTR Plc21C + chr2L 351648 intron Plc21C + chr2L 355407 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-181 4 chr2L 450946 450954 chr2L 451323 451342 4 382 0.0 9.0 4.5 0.7 396 chr2L 450946 intron crq - chr2L 451144 intron crq - chr2L 451342 intron crq - chr2L_4_450001 chr2L_450001 RAL-181 5 chr2L 590619 590654 chr2L 590720 590751 14 97 5.5 3.5 4.5 2.5 132 chr2L 590619 intron Gsc - chr2L 590685 intron Gsc - chr2L 590751 intron Gsc - chr2L_14_590001 chr2L_590001 RAL-181 6 chr2L 597173 597191 chr2L 597291 597310 4 126 44.5 37.0 40.8 0.1 137 chr2L 597173 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597310 intergenic not near genes chr2L_4_595001 chr2L_595001 RAL-181 7 chr2L 686931 686951 chr2L 695958 695987 roo 8 9036 1.5 7.0 4.2 1.5 9056 chr2L 686931 intron ds - chr2L 691459 intron ds - chr2L 695987 intron ds - chr2L_8_690001 chr2L_690001 RAL-181 8 chr2L 764558 764575 chr2L 764655 764675 9 98 1.5 6.0 3.8 1.9 117 chr2L 764558 intergenic not near genes chr2L 764616 intergenic not near genes chr2L 764675 intergenic not near genes chr2L_9_760001 chr2L_760001 RAL-181 9 chr2L 766356 766385 chr2L 766983 767012 11 624 1.0 3.5 2.2 3.4 656 chr2L 766356 intergenic not near genes chr2L 766684 intergenic not near genes chr2L 767012 intergenic not near genes chr2L_11_765001 chr2L_765001 RAL-181 10 chr2L 770463 770491 chr2L 772244 772262 Bari1 10 1776 4.0 8.5 6.2 1.4 1799 chr2L 770463 intergenic not near genes chr2L 771362 intergenic not near genes chr2L 772262 intergenic CR44614 + chr2L_10_770001 chr2L_770001 RAL-181 11 chr2L 775777 775813 chr2L 775926 775962 19 146 2.0 6.5 4.2 3.7 185 chr2L 775777 intergenic not near genes chr2L 775870 intergenic not near genes chr2L 775962 intergenic not near genes chr2L_19_775001 chr2L_775001 RAL-181 12 chr2L 791450 791470 chr2L 791544 791564 5 91 4.0 1.0 2.5 1.4 114 chr2L 791450 intergenic not near genes chr2L 791507 intergenic not near genes chr2L 791564 intergenic not near genes chr2L_5_790001 chr2L_790001 RAL-181 13 chr2L 795925 795954 chr2L 796063 796096 5 140 0.0 1.5 0.8 2.8 171 chr2L 795925 intergenic not near genes chr2L 796010 intergenic not near genes chr2L 796096 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-181 14 chr2L 877845 877857 chr2L 877926 877938 8 80 8.5 5.5 7.0 1.0 93 chr2L 877845 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877938 3` UTR,intron CG15824 -,ninaA + chr2L_8_875001 chr2L_875001 RAL-181 15 chr2L 877858 877865 chr2L 877921 877935 5 74 6.0 5.5 5.8 0.7 77 chr2L 877858 3` UTR,exon CG15824 -,ninaA + chr2L 877896 3` UTR,intron CG15824 -,ninaA + chr2L 877935 3` UTR,intron CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-181 16 chr2L 898373 898386 chr2L 898449 898462 4 75 12.5 8.5 10.5 0.3 89 chr2L 898373 intergenic Lsp1beta +,CR45348 - chr2L 898418 intergenic Lsp1beta +,CR45348 - chr2L 898462 intergenic Lsp1beta +,CR45348 - chr2L_4_895001 chr2L_895001 RAL-181 17 chr2L 922466 922492 chr2L 922547 922573 5 81 2.0 5.5 3.8 1.0 107 chr2L 922466 intergenic CG4341 + chr2L 922520 intergenic CG4341 + chr2L 922573 intergenic CG4341 + chr2L_5_920001 chr2L_920001 RAL-181 18 chr2L 923521 923546 chr2L 923705 923730 7 185 6.0 7.5 6.8 0.9 209 chr2L 923521 intron CG4341 + chr2L 923626 intron CG4341 + chr2L 923730 intron CG4341 + chr2L_7_920001 chr2L_920001 RAL-181 19 chr2L 927864 927885 chr2L 928007 928037 10 146 3.0 6.0 4.5 1.8 173 chr2L 927864 intron CG4341 + chr2L 927950 intron CG4341 + chr2L 928037 intron CG4341 + chr2L_10_925001 chr2L_925001 RAL-181 20 chr2L 976885 976907 chr2L 984521 984543 roo 11 7634 6.0 1.0 3.5 2.4 7658 chr2L 976885 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_11_980001 chr2L_980001 RAL-181 21 chr2L 1035560 1035594 chr2L 1035637 1035667 12 75 4.5 8.5 6.5 1.6 107 chr2L 1035560 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_12_1035001 chr2L_1035001 RAL-181 22 chr2L 1126680 1126703 chr2L 1126747 1126779 15 71 6.0 5.0 5.5 2.3 99 chr2L 1126680 intron Pino - chr2L 1126730 intron Pino - chr2L 1126779 intron Pino - chr2L_15_1125001 chr2L_1125001 RAL-181 23 chr2L 1160290 1160325 chr2L 1160369 1160403 25 77 3.5 7.5 5.5 3.8 113 chr2L 1160290 3` UTR CG5080 - chr2L 1160346 3` UTR CG5080 - chr2L 1160403 3` UTR CG5080 - chr2L_25_1160001 chr2L_1160001 RAL-181 24 chr2L 1220127 1220158 chr2L 1227593 1227619 blood 20 7464 7.5 2.0 4.8 3.4 7492 chr2L 1220127 intron CG42329 + chr2L 1223873 intron CG42329 + chr2L 1227619 intron CG42329 + chr2L_20_1220001 chr2L_1220001 RAL-181 25 chr2L 1301751 1301783 chr2L 1302290 1302322 gypsy 8 537 1.0 1.0 1.0 4.0 571 chr2L 1301751 intergenic not near genes chr2L 1302036 intergenic not near genes chr2L 1302322 intergenic not near genes chr2L_8_1300001 chr2L_1300001 RAL-181 26 chr2L 1392573 1392587 chr2L 1392687 1392701 10 111 9.5 4.0 6.8 1.3 128 chr2L 1392573 intron lea - chr2L 1392637 intron lea - chr2L 1392701 exon lea - chr2L_10_1390001 chr2L_1390001 RAL-181 27 chr2L 1392589 1392599 chr2L 1392685 1392698 12 105 6.0 4.0 5.0 2.0 109 chr2L 1392589 intron lea - chr2L 1392644 intron lea - chr2L 1392698 exon lea - chr2L_12_1390001 chr2L_1390001 RAL-181 28 chr2L 1410274 1410296 chr2L 1410380 1410400 15 104 7.5 4.5 6.0 2.1 126 chr2L 1410274 intron lea - chr2L 1410337 intron lea - chr2L 1410400 intron lea - chr2L_15_1410001 chr2L_1410001 RAL-181 29 chr2L 1450696 1450728 chr2L 1450781 1450813 12 84 7.0 4.0 5.5 1.8 117 chr2L 1450696 intergenic not near genes chr2L 1450754 intergenic not near genes chr2L 1450813 intergenic not near genes chr2L_12_1450001 chr2L_1450001 RAL-181 30 chr2L 1466519 1466551 chr2L 1466779 1466810 7 257 2.5 4.0 3.2 1.7 291 chr2L 1466519 intergenic not near genes chr2L 1466664 intergenic not near genes chr2L 1466810 intergenic not near genes chr2L_7_1465001 chr2L_1465001 RAL-181 31 chr2L 1564339 1564361 chr2L 1564454 1564477 8 115 3.0 3.5 3.2 1.9 138 chr2L 1564339 intron haf + chr2L 1564408 intron haf + chr2L 1564477 intron haf + chr2L_8_1560001 chr2L_1560001 RAL-181 32 chr2L 1570683 1570719 chr2L 1573555 1573591 F-element 10 2872 6.0 5.5 5.8 1.5 2908 chr2L 1570683 intron haf + chr2L 1572137 intron haf + chr2L 1573591 intron haf + chr2L_10_1570001 chr2L_1570001 RAL-181 33 chr2L 1580313 1580339 chr2L 1580521 1580547 10 206 1.0 3.5 2.2 3.1 234 chr2L 1580313 intron haf + chr2L 1580430 intron haf + chr2L 1580547 intron haf + chr2L_10_1580001 chr2L_1580001 RAL-181 34 chr2L 1590970 1590991 chr2L 1591036 1591067 8 74 5.0 5.5 5.2 1.3 97 chr2L 1590970 intron haf + chr2L 1591018 intron haf + chr2L 1591067 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-181 35 chr2L 1591279 1591311 chr2L 1591368 1591400 9 88 3.0 5.5 4.2 1.7 121 chr2L 1591279 intron haf + chr2L 1591340 intron haf + chr2L 1591400 intron haf + chr2L_9_1590001 chr2L_1590001 RAL-181 36 chr2L 1642826 1642842 chr2L 1642901 1642918 5 75 1.5 3.0 2.2 1.6 92 chr2L 1642826 intergenic not near genes chr2L 1642872 intergenic not near genes chr2L 1642918 intergenic not near genes chr2L_5_1640001 chr2L_1640001 RAL-181 37 chr2L 1643449 1643465 chr2L 1643525 1643541 5 77 0.0 3.5 1.8 1.8 92 chr2L 1643449 intergenic not near genes chr2L 1643495 intergenic not near genes chr2L 1643541 intergenic not near genes chr2L_5_1640001 chr2L_1640001 RAL-181 38 chr2L 1655357 1655373 chr2L 1655434 1655460 9 86 5.0 1.5 3.2 2.1 103 chr2L 1655357 intron chinmo + chr2L 1655408 intron chinmo + chr2L 1655460 intron chinmo + chr2L_9_1655001 chr2L_1655001 RAL-181 39 chr2L 1678997 1679010 chr2L 1686451 1686475 blood 6 7457 0.0 7.0 3.5 1.3 7478 chr2L 1678997 intron chinmo + chr2L 1682736 intron chinmo + chr2L 1686475 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-181 40 chr2L 1711354 1711387 chr2L 1711678 1711680 mdg3 13 317 4.0 8.5 6.2 1.8 326 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711517 3` UTR frtz - chr2L 1711680 3` UTR frtz - chr2L_13_1710001 chr2L_1710001 RAL-181 41 chr2L 1721825 1721855 chr2L 1721907 1721907 11 78 1.0 4.0 2.5 3.1 82 chr2L 1721825 intron Rim2 - chr2L 1721866 intron Rim2 - chr2L 1721907 intron Rim2 - chr2L_11_1720001 chr2L_1720001 RAL-181 42 chr2L 1722327 1722338 chr2L 1722568 1722578 4 240 0.0 6.5 3.2 1.0 251 chr2L 1722327 intron Rim2 - chr2L 1722452 intron Rim2 - chr2L 1722578 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-181 43 chr2L 1760014 1760045 chr2L 1760389 1760421 14 373 5.5 2.0 3.8 2.9 407 chr2L 1760014 intergenic not near genes chr2L 1760218 intergenic not near genes chr2L 1760421 intergenic not near genes chr2L_14_1760001 chr2L_1760001 RAL-181 44 chr2L 2049227 2049236 chr2L 2049305 2049320 7 83 0.0 10.0 5.0 1.2 93 chr2L 2049227 intergenic not near genes chr2L 2049274 intergenic not near genes chr2L 2049320 intergenic not near genes chr2L_7_2045001 chr2L_2045001 RAL-181 45 chr2L 2084410 2084432 chr2L 2085356 2085356 6 941 3.5 6.5 5.0 1.0 946 chr2L 2084410 intron,5` UTR dpr3 -,CR44055 + chr2L 2084883 intron dpr3 - chr2L 2085356 intron dpr3 - chr2L_6_2080001 chr2L_2080001 RAL-181 46 chr2L 2100385 2100387 chr2L 2109526 2109538 roo 5 9149 9.5 6.0 7.8 0.6 9153 chr2L 2100385 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109538 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-181 47 chr2L 2100388 2100407 chr2L 2109525 2109558 roo 12 9148 15.5 5.5 10.5 1.0 9170 chr2L 2100388 intron dpr3 - chr2L 2104973 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_12_2100001 chr2L_2100001 RAL-181 48 chr2L 2112118 2112146 chr2L 2119774 2119808 opus 15 7656 2.0 7.5 4.8 2.6 7690 chr2L 2112118 intergenic not near genes chr2L 2115963 intergenic not near genes chr2L 2119808 intergenic not near genes chr2L_15_2115001 chr2L_2115001 RAL-181 49 chr2L 2145747 2145781 chr2L 2145833 2145867 16 85 5.0 2.5 3.8 3.3 120 chr2L 2145747 3` UTR CG11723 - chr2L 2145807 3` UTR CG11723 - chr2L 2145867 3` UTR CG11723 - chr2L_16_2145001 chr2L_2145001 RAL-181 50 chr2L 2174080 2174106 chr2L 2174205 2174231 8 124 3.0 3.0 3.0 2.0 151 chr2L 2174080 intron aop - chr2L 2174156 intron aop - chr2L 2174231 intron aop - chr2L_8_2170001 chr2L_2170001 RAL-181 51 chr2L 2203402 2203439 chr2L 2203531 2203559 7 123 3.5 3.0 3.2 1.7 157 chr2L 2203402 intergenic CG31668 - chr2L 2203480 intergenic CG31668 - chr2L 2203559 intergenic CG31668 - chr2L_7_2200001 chr2L_2200001 RAL-181 52 chr2L 2250421 2250438 chr2L 2251188 2251190 8 764 8.0 0.0 4.0 1.6 769 chr2L 2250421 intergenic Ser12 - chr2L 2250806 exon Ser12 - chr2L 2251190 exon Ser12 - chr2L_8_2250001 chr2L_2250001 RAL-181 53 chr2L 2269837 2269854 chr2L 2269915 2269930 9 77 4.0 5.5 4.8 1.6 93 chr2L 2269837 intergenic not near genes chr2L 2269884 intergenic not near genes chr2L 2269930 intergenic not near genes chr2L_9_2265001 chr2L_2265001 RAL-181 54 chr2L 2269858 2269863 chr2L 2269914 2269921 4 60 2.0 5.5 3.8 0.8 63 chr2L 2269858 intergenic not near genes chr2L 2269890 intergenic not near genes chr2L 2269921 intergenic not near genes chr2L_4_2265001 chr2L_2265001 RAL-181 55 chr2L 2282982 2283015 chr2L 2283142 2283175 21 159 3.5 3.0 3.2 5.0 193 chr2L 2282982 intergenic not near genes chr2L 2283078 intergenic not near genes chr2L 2283175 intergenic not near genes chr2L_21_2280001 chr2L_2280001 RAL-181 56 chr2L 2290607 2290615 chr2L 2290670 2290686 5 68 1.5 7.0 4.2 1.0 79 chr2L 2290607 exon robl22E - chr2L 2290646 intron robl22E - chr2L 2290686 intron robl22E - chr2L_5_2290001 chr2L_2290001 RAL-181 57 chr2L 2294054 2294073 chr2L 2299244 2299266 copia 4 5197 1.5 2.5 2.0 1.3 5212 chr2L 2294054 intergenic not near genes chr2L 2296660 intergenic not near genes chr2L 2299266 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-181 58 chr2L 2302053 2302074 chr2L 2302135 2302152 12 80 4.0 6.5 5.2 1.9 99 chr2L 2302053 intergenic not near genes chr2L 2302102 intergenic not near genes chr2L 2302152 intergenic not near genes chr2L_12_2300001 chr2L_2300001 RAL-181 59 chr2L 2311070 2311092 chr2L 2311166 2311187 7 94 2.0 0.0 1.0 3.5 117 chr2L 2311070 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311187 intron CG9967 - chr2L_7_2310001 chr2L_2310001 RAL-181 60 chr2L 2337341 2337368 chr2L 2337432 2337459 8 86 6.0 5.0 5.5 1.2 118 chr2L 2337341 intron,intron CG9967 -,eys + chr2L 2337400 intron,intron CG9967 -,eys + chr2L 2337459 intron,intron CG9967 -,eys + chr2L_8_2335001 chr2L_2335001 RAL-181 61 chr2L 2565538 2565570 chr2L 2571604 2571629 297 8 6064 3.5 1.5 2.5 2.3 6091 chr2L 2565538 exon Cyp309a2 - chr2L 2568584 intron Cyp309a2 - chr2L 2571629 intron Cyp309a2 - chr2L_8_2565001 chr2L_2565001 RAL-181 62 chr2L 2587820 2587841 chr2L 2587899 2587919 9 76 3.5 3.5 3.5 2.0 99 chr2L 2587820 intergenic not near genes chr2L 2587870 intergenic not near genes chr2L 2587919 intergenic not near genes chr2L_9_2585001 chr2L_2585001 RAL-181 63 chr2L 2587842 2587847 chr2L 2587894 2587926 4 71 2.0 3.0 2.5 1.1 84 chr2L 2587842 intergenic not near genes chr2L 2587884 intergenic not near genes chr2L 2587926 intergenic not near genes chr2L_4_2585001 chr2L_2585001 RAL-181 64 chr2L 2661200 2661232 chr2L 2663031 2663070 I-element 15 1833 4.0 1.0 2.5 4.3 1870 chr2L 2661200 intergenic not near genes chr2L 2662135 intergenic not near genes chr2L 2663070 intergenic not near genes chr2L_15_2660001 chr2L_2660001 RAL-181 65 chr2L 2693814 2693850 chr2L 2693903 2693937 5 91 1.5 0.0 0.8 2.8 123 chr2L 2693814 intron CG31690 + chr2L 2693876 intron CG31690 + chr2L 2693937 intron CG31690 + chr2L_5_2690001 chr2L_2690001 RAL-181 66 chr2L 2698865 2698886 chr2L 2698952 2698953 10 84 5.0 5.0 5.0 1.7 88 chr2L 2698865 intron CG31690 + chr2L 2698909 intron CG31690 + chr2L 2698953 intron CG31690 + chr2L_10_2695001 chr2L_2695001 RAL-181 67 chr2L 2713367 2713371 chr2L 2713451 2713455 4 84 4.0 8.0 6.0 0.6 88 chr2L 2713367 intron CG31690 + chr2L 2713411 intron CG31690 + chr2L 2713455 intron CG31690 + chr2L_4_2710001 chr2L_2710001 RAL-181 68 chr2L 2715688 2715703 chr2L 2715764 2715778 6 75 0.5 4.5 2.5 1.7 90 chr2L 2715688 intron CG31690 + chr2L 2715733 intron CG31690 + chr2L 2715778 intron CG31690 + chr2L_6_2715001 chr2L_2715001 RAL-181 69 chr2L 2891630 2891634 chr2L 2891746 2891765 4 124 5.5 6.0 5.8 0.6 135 chr2L 2891630 intron lilli + chr2L 2891698 intron lilli + chr2L 2891765 intron lilli + chr2L_4_2890001 chr2L_2890001 RAL-181 70 chr2L 2937426 2937453 chr2L 2937503 2937530 11 75 2.5 5.5 4.0 2.2 104 chr2L 2937426 intron lilli + chr2L 2937478 intron lilli + chr2L 2937530 intron lilli + chr2L_11_2935001 chr2L_2935001 RAL-181 71 chr2L 3073032 3073038 chr2L 3078235 3078241 copia 4 5203 7.0 3.5 5.2 0.6 5209 chr2L 3073032 intron toc - chr2L 3075636 intron toc - chr2L 3078241 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-181 72 chr2L 3073041 3073064 chr2L 3078233 3078267 copia 7 5201 2.5 3.0 2.8 1.8 5226 chr2L 3073041 intron toc - chr2L 3075654 intron toc - chr2L 3078267 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-181 73 chr2L 3108867 3108898 chr2L 3108944 3108975 16 75 2.5 0.5 1.5 6.4 108 chr2L 3108867 intron toc - chr2L 3108921 intron toc - chr2L 3108975 intron toc - chr2L_16_3105001 chr2L_3105001 RAL-181 74 chr2L 3156545 3156564 chr2L 3156627 3156651 5 92 2.5 1.0 1.8 1.8 106 chr2L 3156545 intron Mad - chr2L 3156598 intron Mad - chr2L 3156651 intron Mad - chr2L_5_3155001 chr2L_3155001 RAL-181 75 chr2L 3192208 3192242 chr2L 3192319 3192351 16 108 2.5 4.0 3.2 3.8 143 chr2L 3192208 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192351 intron CG34393 - chr2L_16_3190001 chr2L_3190001 RAL-181 76 chr2L 3202740 3202761 chr2L 3210169 3210190 mdg1 5 7429 2.5 1.5 2.0 1.7 7450 chr2L 3202740 intergenic not near genes chr2L 3206465 intergenic not near genes chr2L 3210190 intergenic CR45336 + chr2L_5_3205001 chr2L_3205001 RAL-181 77 chr2L 3243669 3243690 chr2L 3245322 3245342 6 1652 3.0 6.0 4.5 1.1 1673 chr2L 3243669 intergenic not near genes chr2L 3244506 intergenic not near genes chr2L 3245342 intergenic not near genes chr2L_6_3240001 chr2L_3240001 RAL-181 78 chr2L 3251495 3251525 chr2L 3259060 3259090 springer 11 7563 4.5 6.5 5.5 1.7 7595 chr2L 3251495 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_11_3255001 chr2L_3255001 RAL-181 79 chr2L 3291237 3291268 chr2L 3291316 3291338 15 77 2.0 2.5 2.2 4.7 101 chr2L 3291237 intergenic CG9664 - chr2L 3291288 3` UTR CG9664 - chr2L 3291338 3` UTR CG9664 - chr2L_15_3290001 chr2L_3290001 RAL-181 80 chr2L 3323258 3323283 chr2L 3323364 3323390 14 106 5.5 8.5 7.0 1.8 132 chr2L 3323258 intergenic CG8837 + chr2L 3323324 intergenic CG8837 + chr2L 3323390 intergenic CG8837 + chr2L_14_3320001 chr2L_3320001 RAL-181 81 chr2L 3582880 3582908 chr2L 3582957 3582967 5 73 2.0 6.5 4.2 1.0 87 chr2L 3582880 intergenic not near genes chr2L 3582924 intergenic not near genes chr2L 3582967 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-181 82 chr2L 3590170 3590207 chr2L 3590251 3590288 14 78 5.0 3.0 4.0 2.8 118 chr2L 3590170 3` UTR CR43823 - chr2L 3590229 3` UTR CR43823 - chr2L 3590288 3` UTR CR43823 - chr2L_14_3590001 chr2L_3590001 RAL-181 83 chr2L 3632265 3632277 chr2L 3632342 3632353 5 76 0.0 10.0 5.0 0.8 88 chr2L 3632265 intron for - chr2L 3632309 intron for - chr2L 3632353 intron for - chr2L_5_3630001 chr2L_3630001 RAL-181 84 chr2L 3649790 3649803 chr2L 3654991 3654995 copia 4 5199 0.0 4.5 2.2 1.2 5205 chr2L 3649790 intron for - chr2L 3652392 intron for - chr2L 3654995 intron for - chr2L_4_3650001 chr2L_3650001 RAL-181 85 chr2L 3663304 3663341 chr2L 3663383 3663420 7 79 4.0 3.5 3.8 1.5 116 chr2L 3663304 5` UTR CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663420 intron CG34340 + chr2L_7_3660001 chr2L_3660001 RAL-181 86 chr2L 3785602 3785629 chr2L 3786373 3786379 10 761 6.0 18.0 12.0 0.8 777 chr2L 3785602 3` UTR CG31960 + chr2L 3785990 exon CG31958 + chr2L 3786379 intergenic CG31958 + chr2L_10_3785001 chr2L_3785001 RAL-181 87 chr2L 3819034 3819040 chr2L 3819116 3819121 4 82 8.0 0.0 4.0 0.8 87 chr2L 3819034 intergenic CR44077 + chr2L 3819078 intergenic not near genes chr2L 3819121 intergenic not near genes chr2L_4_3815001 chr2L_3815001 RAL-181 88 chr2L 3819042 3819061 chr2L 3819115 3819143 7 78 4.0 0.0 2.0 2.3 101 chr2L 3819042 intergenic not near genes chr2L 3819092 intergenic not near genes chr2L 3819143 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-181 89 chr2L 3891896 3891919 chr2L 3891977 3892003 15 84 7.5 3.0 5.2 2.4 107 chr2L 3891896 intron capu - chr2L 3891950 intron capu - chr2L 3892003 intron capu - chr2L_15_3890001 chr2L_3890001 RAL-181 90 chr2L 3950084 3950107 chr2L 3950158 3950182 4 74 1.5 3.0 2.2 1.2 98 chr2L 3950084 intron fred - chr2L 3950133 intron fred - chr2L 3950182 intron fred - chr2L_4_3950001 chr2L_3950001 RAL-181 91 chr2L 4017303 4017337 chr2L 4017388 4017421 18 82 5.0 5.5 5.2 2.9 118 chr2L 4017303 intergenic not near genes chr2L 4017362 intergenic not near genes chr2L 4017421 intergenic not near genes chr2L_18_4015001 chr2L_4015001 RAL-181 92 chr2L 4066040 4066066 chr2L 4068865 4068891 Juan 10 2825 5.5 6.5 6.0 1.4 2851 chr2L 4066040 intron ed + chr2L 4067466 intron ed + chr2L 4068891 intron ed + chr2L_10_4065001 chr2L_4065001 RAL-181 93 chr2L 4093833 4093866 chr2L 4096599 4096633 15 2773 35.5 37.0 36.2 0.4 2800 chr2L 4093833 intron ed + chr2L 4095233 intron ed + chr2L 4096633 intron ed + chr2L_15_4095001 chr2L_4095001 RAL-181 94 chr2L 4104632 4104658 chr2L 4104789 4104817 6 155 6.0 4.0 5.0 1.0 185 chr2L 4104632 intron ed + chr2L 4104724 intron ed + chr2L 4104817 intron ed + chr2L_6_4100001 chr2L_4100001 RAL-181 95 chr2L 4117754 4117783 chr2L 4117839 4117868 13 82 5.5 2.0 3.8 2.7 114 chr2L 4117754 intergenic not near genes chr2L 4117811 intergenic not near genes chr2L 4117868 intergenic not near genes chr2L_13_4115001 chr2L_4115001 RAL-181 96 chr2L 4166387 4166411 chr2L 4166463 4166494 14 81 3.0 10.5 6.8 1.8 107 chr2L 4166387 intergenic Or24a - chr2L 4166440 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_14_4165001 chr2L_4165001 RAL-181 97 chr2L 4317881 4317913 chr2L 4317957 4317991 15 76 3.0 5.5 4.2 2.9 110 chr2L 4317881 intron tutl + chr2L 4317936 intron tutl + chr2L 4317991 intron tutl + chr2L_15_4315001 chr2L_4315001 RAL-181 98 chr2L 4351472 4351502 chr2L 4351548 4351574 22 73 3.5 6.0 4.8 3.8 102 chr2L 4351472 intergenic CR44700 + chr2L 4351523 intergenic CR44700 + chr2L 4351574 intergenic CR44700 + chr2L_22_4350001 chr2L_4350001 RAL-181 99 chr2L 4601706 4601734 chr2L 4609143 4609175 mdg1 15 7439 5.5 8.5 7.0 1.9 7469 chr2L 4601706 intron dp - chr2L 4605440 intron dp - chr2L 4609175 intron dp - chr2L_15_4605001 chr2L_4605001 RAL-181 100 chr2L 4656543 4656568 chr2L 4656618 4656645 5 76 2.5 2.5 2.5 1.4 102 chr2L 4656543 intergenic not near genes chr2L 4656594 intergenic not near genes chr2L 4656645 intergenic not near genes chr2L_5_4655001 chr2L_4655001 RAL-181 101 chr2L 4740482 4740511 chr2L 4740728 4740742 10 244 3.0 4.5 3.8 2.1 260 chr2L 4740482 intron CG15630 - chr2L 4740612 intron CG15630 - chr2L 4740742 intron CG15630 - chr2L_10_4740001 chr2L_4740001 RAL-181 102 chr2L 4789776 4789808 chr2L 4789969 4790004 9 191 0.5 5.5 3.0 2.2 228 chr2L 4789776 intron CG15630 - chr2L 4789890 intron CG15630 - chr2L 4790004 intron CG15630 - chr2L_9_4785001 chr2L_4785001 RAL-181 103 chr2L 4793310 4793319 chr2L 4793605 4793613 5 295 6.0 2.5 4.2 1.0 303 chr2L 4793310 intron CG15630 - chr2L 4793462 intron CG15630 - chr2L 4793613 intron CG15630 - chr2L_5_4790001 chr2L_4790001 RAL-181 104 chr2L 4819495 4819519 chr2L 4819618 4819642 13 122 1.0 5.5 3.2 3.1 147 chr2L 4819495 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_13_4815001 chr2L_4815001 RAL-181 105 chr2L 4953515 4953542 chr2L 4953756 4953783 pogo 7 241 7.0 2.0 4.5 1.3 268 chr2L 4953515 intergenic Jon25Bii - chr2L 4953649 intergenic not near genes chr2L 4953783 intergenic Jon25Bi - chr2L_7_4950001 chr2L_4950001 RAL-181 106 chr2L 4993217 4993244 chr2L 4993301 4993328 5 84 1.5 1.0 1.2 2.3 111 chr2L 4993217 intergenic Rtnl1 - chr2L 4993272 intergenic Rtnl1 - chr2L 4993328 intergenic Rtnl1 - chr2L_5_4990001 chr2L_4990001 RAL-181 107 chr2L 4996089 4996112 chr2L 4996166 4996189 7 76 3.0 1.5 2.2 2.2 100 chr2L 4996089 intron Rtnl1 - chr2L 4996139 intron Rtnl1 - chr2L 4996189 intron Rtnl1 - chr2L_7_4995001 chr2L_4995001 RAL-181 108 chr2L 5025140 5025148 chr2L 5025216 5025223 4 76 5.5 0.0 2.8 1.1 83 chr2L 5025140 intron vkg - chr2L 5025182 intron vkg - chr2L 5025223 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-181 109 chr2L 5027959 5027969 chr2L 5028043 5028053 4 84 2.0 3.5 2.8 1.1 94 chr2L 5027959 intron vkg - chr2L 5028006 intron vkg - chr2L 5028053 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-181 110 chr2L 5027973 5027987 chr2L 5028042 5028071 4 80 2.0 3.0 2.5 1.1 98 chr2L 5027973 intron vkg - chr2L 5028022 intron vkg - chr2L 5028071 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-181 111 chr2L 5092425 5092443 chr2L 5092512 5092529 4 87 3.5 4.0 3.8 0.8 104 chr2L 5092425 intron pgant5 - chr2L 5092477 intron pgant5 - chr2L 5092529 intron pgant5 - chr2L_4_5090001 chr2L_5090001 RAL-181 112 chr2L 5120980 5121004 chr2L 5121074 5121098 15 92 4.0 6.0 5.0 2.5 118 chr2L 5120980 intron Msp300 + chr2L 5121039 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_15_5120001 chr2L_5120001 RAL-181 113 chr2L 5262526 5262546 chr2L 5262603 5262623 7 74 8.5 3.5 6.0 1.0 97 chr2L 5262526 intron tkv - chr2L 5262574 intron tkv - chr2L 5262623 intron tkv - chr2L_7_5260001 chr2L_5260001 RAL-181 114 chr2L 5265508 5265538 chr2L 5269991 5269995 4 4461 35.0 41.0 38.0 0.1 4487 chr2L 5265508 intron,exon tkv -,Cyp4ac1 + chr2L 5267752 intron,exon tkv -,Cyp4ac2 + chr2L 5269995 intron,exon tkv -,Cyp4ac3 + chr2L_4_5265001 chr2L_5265001 RAL-181 115 chr2L 5342778 5342800 chr2L 5345148 5345180 Doc 6 2378 4.0 3.0 3.5 1.3 2402 chr2L 5342778 intergenic not near genes chr2L 5343979 intergenic not near genes chr2L 5345180 intergenic not near genes chr2L_6_5340001 chr2L_5340001 RAL-181 116 chr2L 5376201 5376204 chr2L 5376272 5376285 4 78 6.0 2.5 4.2 0.8 84 chr2L 5376201 intergenic not near genes chr2L 5376243 intergenic not near genes chr2L 5376285 intergenic not near genes chr2L_4_5375001 chr2L_5375001 RAL-181 117 chr2L 5488033 5488036 chr2L 5488099 5488116 5 77 3.5 1.0 2.2 1.6 83 chr2L 5488033 intergenic not near genes chr2L 5488074 intergenic not near genes chr2L 5488116 intergenic not near genes chr2L_5_5485001 chr2L_5485001 RAL-181 118 chr2L 5582203 5582225 chr2L 5582269 5582300 6 70 3.5 3.0 3.2 1.4 97 chr2L 5582203 intergenic not near genes chr2L 5582252 intergenic not near genes chr2L 5582300 intergenic not near genes chr2L_6_5580001 chr2L_5580001 RAL-181 119 chr2L 5695862 5695889 chr2L 5695954 5695981 5 91 0.5 3.0 1.8 1.8 119 chr2L 5695862 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5695981 intergenic not near genes chr2L_5_5695001 chr2L_5695001 RAL-181 120 chr2L 5762455 5762473 chr2L 5762540 5762557 5 84 1.5 5.0 3.2 1.2 102 chr2L 5762455 intergenic CG11030 +,obst-E - chr2L 5762506 intergenic obst-E -,CG11030 + chr2L 5762557 3` UTR obst-E - chr2L_5_5760001 chr2L_5760001 RAL-181 121 chr2L 5784951 5784979 chr2L 5785033 5785062 5 83 1.0 1.5 1.2 2.3 111 chr2L 5784951 intron CG9171 - chr2L 5785006 intron CG9171 - chr2L 5785062 intron CG9171 - chr2L_5_5785001 chr2L_5785001 RAL-181 122 chr2L 5816180 5816215 chr2L 5816256 5816291 16 74 6.0 5.0 5.5 2.5 111 chr2L 5816180 intergenic not near genes chr2L 5816236 intergenic not near genes chr2L 5816291 intergenic not near genes chr2L_16_5815001 chr2L_5815001 RAL-181 123 chr2L 5827712 5827735 chr2L 5836719 5836741 roo 14 9006 8.0 8.5 8.2 1.5 9029 chr2L 5827712 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836741 intron TrissinR + chr2L_14_5830001 chr2L_5830001 RAL-181 124 chr2L 5827738 5827741 chr2L 5836718 5836749 roo 7 9003 7.5 8.5 8.0 0.8 9011 chr2L 5827738 intron TrissinR + chr2L 5832244 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-181 125 chr2L 5904462 5904474 chr2L 5904542 5904554 4 80 2.0 0.0 1.0 2.0 92 chr2L 5904462 intron CG9021 - chr2L 5904508 intron CG9021 - chr2L 5904554 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-181 126 chr2L 6021622 6021642 chr2L 6021698 6021710 11 75 6.0 0.0 3.0 2.8 88 chr2L 6021622 exon CG13996 + chr2L 6021666 exon CG13996 + chr2L 6021710 3` UTR CG13996 + chr2L_11_6020001 chr2L_6020001 RAL-181 127 chr2L 6025558 6025569 chr2L 6025645 6025656 6 86 8.0 6.5 7.2 0.7 98 chr2L 6025558 intergenic CG9109 - chr2L 6025607 intergenic CG9109 - chr2L 6025656 intergenic CG9109 - chr2L_6_6025001 chr2L_6025001 RAL-181 128 chr2L 6025570 6025583 chr2L 6025641 6025665 10 81 4.5 6.0 5.2 1.6 95 chr2L 6025570 intergenic CG9109 - chr2L 6025618 intergenic CG9109 - chr2L 6025665 intergenic CG9109 - chr2L_10_6025001 chr2L_6025001 RAL-181 129 chr2L 6026628 6026632 chr2L 6027200 6027204 6 572 13.0 4.0 8.5 0.6 576 chr2L 6026628 intron CG9109 - chr2L 6026916 intron CG9109 - chr2L 6027204 intron CG9109 - chr2L_6_6025001 chr2L_6025001 RAL-181 130 chr2L 6026633 6026662 chr2L 6027199 6027234 11 571 5.0 4.0 4.5 2.0 601 chr2L 6026633 intron CG9109 - chr2L 6026934 intron CG9109 - chr2L 6027234 intron CG9109 - chr2L_11_6025001 chr2L_6025001 RAL-181 131 chr2L 6050443 6050466 chr2L 6050547 6050570 9 103 1.0 2.5 1.8 3.2 127 chr2L 6050443 intergenic CG12393 +,CG9135 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050570 intergenic CG12393 +,CG9135 + chr2L_9_6050001 chr2L_6050001 RAL-181 132 chr2L 6106226 6106233 chr2L 6106316 6106323 5 90 1.0 4.0 2.5 1.4 97 chr2L 6106226 intron stai + chr2L 6106274 intron stai + chr2L 6106323 intron stai + chr2L_5_6105001 chr2L_6105001 RAL-181 133 chr2L 6231660 6231687 chr2L 6231742 6231747 5 75 1.5 0.0 0.8 2.8 87 chr2L 6231660 intergenic CR44823 + chr2L 6231704 intergenic CR44823 + chr2L 6231747 intergenic CR44823 + chr2L_5_6230001 chr2L_6230001 RAL-181 134 chr2L 6342392 6342421 chr2L 6342472 6342503 16 81 1.0 5.0 3.0 4.0 111 chr2L 6342392 intron Cpr + chr2L 6342448 intron Cpr + chr2L 6342503 intron Cpr + chr2L_16_6340001 chr2L_6340001 RAL-181 135 chr2L 6363149 6363182 chr2L 6366070 6366098 Burdock 13 2917 3.0 7.0 5.0 2.2 2949 chr2L 6363149 intergenic not near genes chr2L 6364624 intergenic not near genes chr2L 6366098 intergenic not near genes chr2L_13_6360001 chr2L_6360001 RAL-181 136 chr2L 6426854 6426888 chr2L 6445113 6445148 roo 21 18257 3.5 10.0 6.8 2.7 18294 chr2L 6426854 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_21_6435001 chr2L_6435001 RAL-181 137 chr2L 6472659 6472666 chr2L 6472743 6472751 4 91 4.0 6.5 5.2 0.6 92 chr2L 6472659 intron mmy - chr2L 6472705 intron mmy - chr2L 6472751 intron mmy - chr2L_4_6470001 chr2L_6470001 RAL-181 138 chr2L 6544376 6544386 chr2L 6544468 6544478 10 92 7.5 8.5 8.0 1.1 102 chr2L 6544376 intron eya - chr2L 6544427 intron eya - chr2L 6544478 intron eya - chr2L_10_6540001 chr2L_6540001 RAL-181 139 chr2L 6590107 6590122 chr2L 6590167 6590198 8 70 6.0 5.0 5.5 1.2 91 chr2L 6590107 intron CG11319 - chr2L 6590152 intron CG11319 - chr2L 6590198 intron CG11319 - chr2L_8_6590001 chr2L_6590001 RAL-181 140 chr2L 6597795 6597804 chr2L 6597979 6597984 9 182 11.0 5.0 8.0 1.0 189 chr2L 6597795 intron CG11319 - chr2L 6597890 intron CG11319 - chr2L 6597984 intron CG11319 - chr2L_9_6595001 chr2L_6595001 RAL-181 141 chr2L 6640906 6640939 chr2L 6641001 6641034 19 92 5.5 7.0 6.2 2.6 128 chr2L 6640906 exon CG31635 - chr2L 6640970 intron CG31635 - chr2L 6641034 intron CG31635 - chr2L_19_6640001 chr2L_6640001 RAL-181 142 chr2L 6746111 6746115 chr2L 6746187 6746191 4 76 4.5 7.5 6.0 0.6 80 chr2L 6746111 intron CG11221 + chr2L 6746151 intron CG11221 + chr2L 6746191 intron CG11221 + chr2L_4_6745001 chr2L_6745001 RAL-181 143 chr2L 6771996 6772014 chr2L 6772083 6772087 7 84 7.5 10.0 8.8 0.7 91 chr2L 6771996 intron CG11321 - chr2L 6772042 intron CG11321 - chr2L 6772087 intron CG11321 - chr2L_7_6770001 chr2L_6770001 RAL-181 144 chr2L 6799540 6799571 chr2L 6799627 6799653 5 86 3.0 2.5 2.8 1.3 113 chr2L 6799540 5` UTR CR43610 + chr2L 6799596 5` UTR CR43610 + chr2L 6799653 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-181 145 chr2L 6836502 6836529 chr2L 6836584 6836611 5 77 2.0 1.0 1.5 2.0 109 chr2L 6836502 intron sens-2 + chr2L 6836556 intron sens-2 + chr2L 6836611 intron sens-2 + chr2L_5_6835001 chr2L_6835001 RAL-181 146 chr2L 6844426 6844455 chr2L 6844539 6844568 11 112 5.5 4.5 5.0 1.8 142 chr2L 6844426 intergenic not near genes chr2L 6844497 intergenic not near genes chr2L 6844568 intergenic not near genes chr2L_11_6840001 chr2L_6840001 RAL-181 147 chr2L 6876787 6876809 chr2L 6882963 6882985 diver 9 6181 9.5 2.5 6.0 1.3 6198 chr2L 6876787 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882985 intron Nlg2 + chr2L_9_6875001 chr2L_6875001 RAL-181 148 chr2L 6886160 6886165 chr2L 6886222 6886225 4 72 7.0 7.0 7.0 0.5 65 chr2L 6886160 intron Nlg2 + chr2L 6886192 intron Nlg2 + chr2L 6886225 intron Nlg2 + chr2L_4_6885001 chr2L_6885001 RAL-181 149 chr2L 6969276 6969308 chr2L 6969356 6969387 17 79 4.5 7.5 6.0 2.4 111 chr2L 6969276 3` UTR snRNP-U1-70K - chr2L 6969332 3` UTR snRNP-U1-70K - chr2L 6969387 3` UTR snRNP-U1-70K - chr2L_17_6965001 chr2L_6965001 RAL-181 150 chr2L 7043227 7043241 chr2L 7045631 7045645 9 2403 6.0 5.5 5.8 1.3 2418 chr2L 7043227 intron milt + chr2L 7044436 intron milt + chr2L 7045645 intron milt + chr2L_9_7040001 chr2L_7040001 RAL-181 151 chr2L 7043242 7043254 chr2L 7045629 7045651 5 2394 5.5 5.0 5.2 0.8 2409 chr2L 7043242 intron milt + chr2L 7044446 intron milt + chr2L 7045651 intron milt + chr2L_5_7040001 chr2L_7040001 RAL-181 152 chr2L 7051159 7051162 chr2L 7051231 7051238 4 74 0.0 2.5 1.2 1.8 79 chr2L 7051159 intron milt + chr2L 7051198 intron milt + chr2L 7051238 intron milt + chr2L_4_7050001 chr2L_7050001 RAL-181 153 chr2L 7139249 7139279 chr2L 7139972 7140001 6 722 3.0 2.0 2.5 1.7 752 chr2L 7139249 intron Pvf3 - chr2L 7139625 intron Pvf3 - chr2L 7140001 intron Pvf3 - chr2L_6_7135001 chr2L_7135001 RAL-181 154 chr2L 7247766 7247793 chr2L 7247855 7247882 19 87 2.5 9.0 5.8 2.8 116 chr2L 7247766 intron Ndae1 - chr2L 7247824 intron Ndae1 - chr2L 7247882 intron Ndae1 - chr2L_19_7245001 chr2L_7245001 RAL-181 155 chr2L 7301297 7301328 chr2L 7301380 7301397 16 82 4.5 3.0 3.8 3.3 100 chr2L 7301297 intergenic not near genes chr2L 7301347 intergenic not near genes chr2L 7301397 intergenic not near genes chr2L_16_7300001 chr2L_7300001 RAL-181 156 chr2L 7337008 7337029 chr2L 7337084 7337106 10 75 3.0 6.5 4.8 1.7 98 chr2L 7337008 intron Wnt6 + chr2L 7337057 intron Wnt6 + chr2L 7337106 intron Wnt6 + chr2L_10_7335001 chr2L_7335001 RAL-181 157 chr2L 7343325 7343358 chr2L 7350441 7350469 roo 11 7113 4.5 3.0 3.8 2.3 7144 chr2L 7343325 intron Wnt6 + chr2L 7346897 intron Wnt6 + chr2L 7350469 intron Wnt6 + chr2L_11_7345001 chr2L_7345001 RAL-181 158 chr2L 7399305 7399335 chr2L 7399678 7399703 10 370 4.0 8.5 6.2 1.4 398 chr2L 7399305 intergenic not near genes chr2L 7399504 intergenic not near genes chr2L 7399703 intergenic not near genes chr2L_10_7395001 chr2L_7395001 RAL-181 159 chr2L 7493671 7493704 chr2L 7493880 7493915 20 211 4.0 2.0 3.0 5.0 244 chr2L 7493671 intron Ziz - chr2L 7493793 intron Ziz - chr2L 7493915 intron Ziz - chr2L_20_7490001 chr2L_7490001 RAL-181 160 chr2L 7555215 7555233 chr2L 7555292 7555310 11 76 2.0 2.5 2.2 3.4 95 chr2L 7555215 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555310 intron RapGAP1 - chr2L_11_7555001 chr2L_7555001 RAL-181 161 chr2L 7766633 7766645 chr2L 7766708 7766713 4 72 6.0 0.5 3.2 1.0 80 chr2L 7766633 intergenic not near genes chr2L 7766673 intergenic not near genes chr2L 7766713 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-181 162 chr2L 7829485 7829522 chr2L 7829580 7829591 9 91 3.0 2.0 2.5 2.6 106 chr2L 7829485 intron mts + chr2L 7829538 intron mts + chr2L 7829591 intron mts + chr2L_9_7825001 chr2L_7825001 RAL-181 163 chr2L 7861309 7861336 chr2L 7861413 7861440 9 104 1.5 1.5 1.5 3.6 131 chr2L 7861309 intergenic TwdlE - chr2L 7861374 intergenic not near genes chr2L 7861440 intergenic not near genes chr2L_9_7860001 chr2L_7860001 RAL-181 164 chr2L 7912197 7912223 chr2L 7912273 7912285 9 74 2.5 6.0 4.2 1.7 88 chr2L 7912197 intron Snoo - chr2L 7912241 intron Snoo - chr2L 7912285 intron Snoo - chr2L_9_7910001 chr2L_7910001 RAL-181 165 chr2L 7922744 7922774 chr2L 7922824 7922852 12 77 6.5 6.0 6.2 1.7 108 chr2L 7922744 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922852 intron Snoo - chr2L_12_7920001 chr2L_7920001 RAL-181 166 chr2L 7959046 7959056 chr2L 7960456 7960467 pogo 7 1409 7.5 8.0 7.8 0.8 1421 chr2L 7959046 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960467 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-181 167 chr2L 7977092 7977112 chr2L 7984065 7984088 297 5 6973 3.5 3.0 3.2 1.2 6996 chr2L 7977092 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_5_7980001 chr2L_7980001 RAL-181 168 chr2L 8003036 8003067 chr2L 8003118 8003148 6 81 1.5 2.5 2.0 2.0 112 chr2L 8003036 intron Wwox - chr2L 8003092 intron Wwox - chr2L 8003148 intron Wwox - chr2L_6_8000001 chr2L_8000001 RAL-181 169 chr2L 8013614 8013634 chr2L 8018819 8018837 copia 8 5204 5.0 0.5 2.8 2.1 5223 chr2L 8013614 intron Tg + chr2L 8016226 intron Tg + chr2L 8018837 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-181 170 chr2L 8018826 8018835 chr2L 8023596 8023617 Doc 4 4776 0.0 2.5 1.2 1.8 4791 chr2L 8018826 intron Tg + chr2L 8021222 intron Tg + chr2L 8023617 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-181 171 chr2L 8044111 8044130 chr2L 8044175 8044207 18 76 5.5 6.5 6.0 2.6 96 chr2L 8044111 intron CG7466 + chr2L 8044159 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_18_8040001 chr2L_8040001 RAL-181 172 chr2L 8128032 8128059 chr2L 8128116 8128142 14 81 2.0 2.5 2.2 4.4 110 chr2L 8128032 intron CG8668 + chr2L 8128087 intron CG8668 + chr2L 8128142 intron CG8668 + chr2L_14_8125001 chr2L_8125001 RAL-181 173 chr2L 8167159 8167181 chr2L 8167250 8167270 7 87 1.5 8.5 5.0 1.2 111 chr2L 8167159 intron Piezo + chr2L 8167214 intron Piezo + chr2L 8167270 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-181 174 chr2L 8244732 8244746 chr2L 8244854 8244868 5 121 2.0 2.0 2.0 1.7 136 chr2L 8244732 intron CG8086 - chr2L 8244800 intron CG8086 - chr2L 8244868 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-181 175 chr2L 8277855 8277867 chr2L 8277935 8277947 6 80 0.0 0.0 0.0 6.0 92 chr2L 8277855 intron Btk29A - chr2L 8277901 intron Btk29A - chr2L 8277947 intron Btk29A - chr2L_6_8275001 chr2L_8275001 RAL-181 176 chr2L 8334460 8334472 chr2L 8334536 8334539 6 76 4.0 3.5 3.8 1.2 79 chr2L 8334460 intergenic not near genes chr2L 8334500 intergenic not near genes chr2L 8334539 intergenic not near genes chr2L_6_8330001 chr2L_8330001 RAL-181 177 chr2L 8336934 8336964 chr2L 8337013 8337027 6 70 0.0 5.5 2.8 1.6 93 chr2L 8336934 intergenic not near genes chr2L 8336980 intergenic not near genes chr2L 8337027 intergenic not near genes chr2L_6_8335001 chr2L_8335001 RAL-181 178 chr2L 8349608 8349631 chr2L 8349713 8349736 12 104 5.0 3.5 4.2 2.3 128 chr2L 8349608 exon CG7778 + chr2L 8349672 intron CG7778 + chr2L 8349736 intron CG7778 + chr2L_12_8345001 chr2L_8345001 RAL-181 179 chr2L 8452416 8452431 chr2L 8461590 8461602 roo 4 9173 3.0 2.5 2.8 1.1 9186 chr2L 8452416 intron fu12 - chr2L 8457009 intron fu12 - chr2L 8461602 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-181 180 chr2L 8498205 8498235 chr2L 8498286 8498316 12 80 4.0 2.0 3.0 3.0 111 chr2L 8498205 intron Dh31 - chr2L 8498260 intron Dh31 - chr2L 8498316 intron Dh31 - chr2L_12_8495001 chr2L_8495001 RAL-181 181 chr2L 8510139 8510161 chr2L 8510228 8510231 6 83 5.5 1.0 3.2 1.4 92 chr2L 8510139 exon CG13096 - chr2L 8510185 intron CG13096 - chr2L 8510231 intron CG13096 - chr2L_6_8510001 chr2L_8510001 RAL-181 182 chr2L 8538169 8538182 chr2L 8538242 8538242 4 71 4.5 0.0 2.2 1.2 73 chr2L 8538169 intron CG17834 + chr2L 8538206 intron CG17834 + chr2L 8538242 intron CG17834 + chr2L_4_8535001 chr2L_8535001 RAL-181 183 chr2L 8594474 8594498 chr2L 8601519 8601552 297 5 7049 1.0 1.0 1.0 2.5 7078 chr2L 8594474 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598013 intron Sema-1a + chr2L 8601552 intron Sema-1a + chr2L_5_8595001 chr2L_8595001 RAL-181 184 chr2L 8604966 8604996 chr2L 8605064 8605094 9 98 3.5 3.5 3.5 2.0 128 chr2L 8604966 intron Sema-1a + chr2L 8605030 intron Sema-1a + chr2L 8605094 intron Sema-1a + chr2L_9_8605001 chr2L_8605001 RAL-181 185 chr2L 8719203 8719236 chr2L 8719279 8719312 12 72 1.0 5.5 3.2 2.9 109 chr2L 8719203 intron raw - chr2L 8719258 intron raw - chr2L 8719312 intron raw - chr2L_12_8715001 chr2L_8715001 RAL-181 186 chr2L 8723120 8723144 chr2L 8731497 8731520 Tirant 9 8375 5.5 5.5 5.5 1.4 8400 chr2L 8723120 intron raw - chr2L 8727320 intron raw - chr2L 8731520 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-181 187 chr2L 8797458 8797468 chr2L 8797565 8797583 4 110 6.0 6.0 6.0 0.6 125 chr2L 8797458 intergenic not near genes chr2L 8797520 intergenic not near genes chr2L 8797583 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-181 188 chr2L 8797470 8797477 chr2L 8797560 8797561 6 96 4.0 4.5 4.2 1.2 91 chr2L 8797470 intergenic not near genes chr2L 8797516 intergenic not near genes chr2L 8797561 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-181 189 chr2L 8811077 8811102 chr2L 8811205 8811224 7 127 5.0 3.0 4.0 1.4 147 chr2L 8811077 intergenic not near genes chr2L 8811150 intergenic not near genes chr2L 8811224 intergenic not near genes chr2L_7_8810001 chr2L_8810001 RAL-181 190 chr2L 8956239 8956242 chr2L 8956316 8956319 4 77 0.5 0.0 0.2 3.3 80 chr2L 8956239 intron CG31886 - chr2L 8956279 intron CG31886 - chr2L 8956319 intron CG31886 - chr2L_4_8955001 chr2L_8955001 RAL-181 191 chr2L 8991347 8991367 chr2L 8991451 8991472 7 104 0.0 3.0 1.5 2.8 125 chr2L 8991347 intergenic CG9555 + chr2L 8991410 intergenic CG9555 + chr2L 8991472 intergenic CG9555 + chr2L_7_8990001 chr2L_8990001 RAL-181 192 chr2L 8997270 8997289 chr2L 8997634 8997655 7 365 25.5 34.5 30.0 0.2 385 chr2L 8997270 5` UTR alien - chr2L 8997462 intergenic alien -,CG18661 + chr2L 8997655 5` UTR CG18661 + chr2L_7_8995001 chr2L_8995001 RAL-181 193 chr2L 9084337 9084340 chr2L 16217660 16217660 6 7133321 27.0 36.0 31.5 0.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-181 194 chr2L 9190953 9190959 chr2L 9191025 9191038 5 79 0.0 3.5 1.8 1.8 85 chr2L 9190953 intron tai + chr2L 9190996 intron tai + chr2L 9191038 intron tai + chr2L_5_9190001 chr2L_9190001 RAL-181 195 chr2L 9195871 9195880 chr2L 9195954 9195963 4 83 2.0 0.5 1.2 1.8 92 chr2L 9195871 intron tai + chr2L 9195917 intron tai + chr2L 9195963 intron tai + chr2L_4_9195001 chr2L_9195001 RAL-181 196 chr2L 9217969 9218002 chr2L 9222754 9222783 Doc 12 4784 2.0 7.0 4.5 2.2 4814 chr2L 9217969 intron tai + chr2L 9220376 intron tai + chr2L 9222783 intron tai + chr2L_12_9220001 chr2L_9220001 RAL-181 197 chr2L 9259230 9259242 chr2L 9259308 9259329 10 86 2.5 1.0 1.8 3.6 99 chr2L 9259230 intron Ggamma30A + chr2L 9259280 intron Ggamma30A + chr2L 9259329 intron Ggamma30A + chr2L_10_9255001 chr2L_9255001 RAL-181 198 chr2L 9280007 9280019 chr2L 9280100 9280113 4 93 2.0 4.0 3.0 1.0 106 chr2L 9280007 intron Ggamma30A + chr2L 9280060 intron Ggamma30A + chr2L 9280113 intron Ggamma30A + chr2L_4_9280001 chr2L_9280001 RAL-181 199 chr2L 9285252 9285278 chr2L 9285551 9285577 22 298 4.5 5.0 4.8 3.8 325 chr2L 9285252 intron Ggamma30A + chr2L 9285414 intron Ggamma30A + chr2L 9285577 intron Ggamma30A + chr2L_22_9285001 chr2L_9285001 RAL-181 200 chr2L 9297379 9297403 chr2L 9297455 9297473 22 75 6.0 8.0 7.0 2.8 94 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297426 3` UTR Ggamma30A + chr2L 9297473 3` UTR Ggamma30A + chr2L_22_9295001 chr2L_9295001 RAL-181 201 chr2L 9361551 9361575 chr2L 9361631 9361656 7 78 6.5 0.0 3.2 1.7 105 chr2L 9361551 intergenic not near genes chr2L 9361604 intergenic not near genes chr2L 9361656 intergenic not near genes chr2L_7_9360001 chr2L_9360001 RAL-181 202 chr2L 9362148 9362153 chr2L 9362226 9362231 5 78 2.0 8.5 5.2 0.8 83 chr2L 9362148 intergenic not near genes chr2L 9362190 intergenic not near genes chr2L 9362231 intergenic not near genes chr2L_5_9360001 chr2L_9360001 RAL-181 203 chr2L 9393502 9393518 chr2L 9396463 9396482 jockey 5 2965 0.0 4.5 2.2 1.6 2980 chr2L 9393502 intron Shawl - chr2L 9394992 intron Shawl - chr2L 9396482 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-181 204 chr2L 9441322 9441356 chr2L 9441426 9441460 11 102 5.5 3.0 4.2 2.1 138 chr2L 9441322 intron numb + chr2L 9441391 intron numb + chr2L 9441460 intron numb + chr2L_11_9440001 chr2L_9440001 RAL-181 205 chr2L 9460755 9460766 chr2L 9460841 9460852 6 86 8.5 0.0 4.2 1.2 97 chr2L 9460755 intron numb + chr2L 9460804 intron numb + chr2L 9460852 intron numb + chr2L_6_9460001 chr2L_9460001 RAL-181 206 chr2L 9775984 9776015 chr2L 9776066 9776097 4 82 1.5 1.5 1.5 1.6 113 chr2L 9775984 intergenic not near genes chr2L 9776040 intergenic not near genes chr2L 9776097 intergenic not near genes chr2L_4_9775001 chr2L_9775001 RAL-181 207 chr2L 9881007 9881040 chr2L 9881084 9881100 12 74 3.5 2.0 2.8 3.2 93 chr2L 9881007 intron nAChRalpha6 - chr2L 9881054 intron nAChRalpha6 - chr2L 9881100 intron nAChRalpha6 - chr2L_12_9880001 chr2L_9880001 RAL-181 208 chr2L 9883102 9883134 chr2L 9883247 9883279 9 145 5.0 2.0 3.5 2.0 177 chr2L 9883102 intron nAChRalpha6 - chr2L 9883190 intron nAChRalpha6 - chr2L 9883279 intron nAChRalpha6 - chr2L_9_9880001 chr2L_9880001 RAL-181 209 chr2L 9973732 9973759 chr2L 9980846 9980875 HMS-Beagle 17 7116 8.0 8.0 8.0 1.9 7143 chr2L 9973732 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_17_9975001 chr2L_9975001 RAL-181 210 chr2L 9986349 9986383 chr2L 9986444 9986459 4 90 5.5 5.5 5.5 0.6 110 chr2L 9986349 intron bib + chr2L 9986404 intron bib + chr2L 9986459 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-181 211 chr2L 10051728 10051745 chr2L 10051811 10051830 9 84 8.0 6.5 7.2 1.1 102 chr2L 10051728 5` UTR CR44874 + chr2L 10051779 5` UTR CR44874 + chr2L 10051830 5` UTR CR44874 + chr2L_9_10050001 chr2L_10050001 RAL-181 212 chr2L 10051746 10051752 chr2L 10051810 10051836 4 79 5.5 5.5 5.5 0.6 90 chr2L 10051746 5` UTR CR44874 + chr2L 10051791 5` UTR CR44874 + chr2L 10051836 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-181 213 chr2L 10153200 10153238 chr2L 10153279 10153313 22 77 4.0 4.5 4.2 4.2 113 chr2L 10153200 intron,exon CG44153 -,CG4839 + chr2L 10153256 intron,intron CG44153 -,CG4839 + chr2L 10153313 intron,intron CG44153 -,CG4839 + chr2L_22_10150001 chr2L_10150001 RAL-181 214 chr2L 10156326 10156355 chr2L 10163790 10163825 blood 16 7466 6.0 3.0 4.5 2.9 7499 chr2L 10156326 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_16_10160001 chr2L_10160001 RAL-181 215 chr2L 10407643 10407653 chr2L 10407719 10407729 5 76 3.0 4.0 3.5 1.1 86 chr2L 10407643 exon Ir31a + chr2L 10407686 intron Ir31a + chr2L 10407729 intron Ir31a + chr2L_5_10405001 chr2L_10405001 RAL-181 216 chr2L 10563916 10563948 chr2L 10564009 10564024 8 90 4.5 4.5 4.5 1.5 108 chr2L 10563916 intron Trim9 + chr2L 10563970 intron Trim9 + chr2L 10564024 intron Trim9 + chr2L_8_10560001 chr2L_10560001 RAL-181 217 chr2L 10631256 10631275 chr2L 10631338 10631349 6 84 1.5 0.0 0.8 3.3 93 chr2L 10631256 intron CG7329 - chr2L 10631302 intron CG7329 - chr2L 10631349 intron CG7329 - chr2L_6_10630001 chr2L_10630001 RAL-181 218 chr2L 10634757 10634789 chr2L 10634830 10634868 6 78 3.0 0.5 1.8 2.1 111 chr2L 10634757 intron CG7329 - chr2L 10634812 intron CG7329 - chr2L 10634868 intron CG7329 - chr2L_6_10630001 chr2L_10630001 RAL-181 219 chr2L 10640638 10640672 chr2L 10640727 10640743 27 85 5.5 7.5 6.5 3.6 105 chr2L 10640638 exon CG31872 + chr2L 10640690 exon CG31872 + chr2L 10640743 exon CG31872 + chr2L_27_10640001 chr2L_10640001 RAL-181 220 chr2L 10647600 10647607 chr2L 10647724 10647732 4 124 13.0 37.5 25.2 0.2 132 chr2L 10647600 exon CG17097 + chr2L 10647666 exon CG17097 + chr2L 10647732 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-181 221 chr2L 10834564 10834596 chr2L 10834644 10834654 13 74 4.0 4.5 4.2 2.5 90 chr2L 10834564 intron Nos - chr2L 10834609 intron Nos - chr2L 10834654 intron Nos - chr2L_13_10830001 chr2L_10830001 RAL-181 222 chr2L 10862849 10862880 chr2L 10864453 10864471 Rt1c 13 1603 4.5 7.0 5.8 1.9 1622 chr2L 10862849 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864471 3` UTR CR43807 - chr2L_13_10860001 chr2L_10860001 RAL-181 223 chr2L 10945088 10945106 chr2L 10945165 10945175 10 76 7.0 11.5 9.2 1.0 87 chr2L 10945088 intron dpr2 - chr2L 10945132 intron dpr2 - chr2L 10945175 intron dpr2 - chr2L_10_10945001 chr2L_10945001 RAL-181 224 chr2L 10946967 10946972 chr2L 10956159 10956187 roo 6 9207 5.0 8.5 6.8 0.8 9220 chr2L 10946967 intron dpr2 - chr2L 10951577 intron dpr2 - chr2L 10956187 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-181 225 chr2L 11113771 11113797 chr2L 11113861 11113887 6 90 1.5 4.0 2.8 1.6 116 chr2L 11113771 intergenic Gr32a + chr2L 11113829 intergenic Gr32a + chr2L 11113887 intergenic Gr32a + chr2L_6_11110001 chr2L_11110001 RAL-181 226 chr2L 11183786 11183810 chr2L 11183882 11183898 5 94 1.0 2.5 1.8 1.8 112 chr2L 11183786 intron Ca-beta - chr2L 11183842 intron Ca-beta - chr2L 11183898 intron Ca-beta - chr2L_5_11180001 chr2L_11180001 RAL-181 227 chr2L 11195128 11195154 chr2L 11195210 11195237 5 81 1.5 0.0 0.8 2.8 109 chr2L 11195128 intron Ca-beta - chr2L 11195182 intron Ca-beta - chr2L 11195237 intron Ca-beta - chr2L_5_11195001 chr2L_11195001 RAL-181 228 chr2L 11224059 11224091 chr2L 11224170 11224195 13 109 3.5 2.0 2.8 3.4 136 chr2L 11224059 intron ab + chr2L 11224127 intron ab + chr2L 11224195 intron ab + chr2L_13_11220001 chr2L_11220001 RAL-181 229 chr2L 11245256 11245277 chr2L 11245335 11245355 7 76 6.5 5.5 6.0 1.0 99 chr2L 11245256 intron ab + chr2L 11245306 intron ab + chr2L 11245355 intron ab + chr2L_7_11245001 chr2L_11245001 RAL-181 230 chr2L 11287073 11287100 chr2L 11287597 11287601 7 507 21.0 18.0 19.5 0.3 528 chr2L 11287073 intergenic not near genes chr2L 11287337 intergenic not near genes chr2L 11287601 intergenic not near genes chr2L_7_11285001 chr2L_11285001 RAL-181 231 chr2L 11380610 11380627 chr2L 11380687 11380687 5 72 5.5 4.5 5.0 0.8 77 chr2L 11380610 intergenic not near genes chr2L 11380648 intergenic not near genes chr2L 11380687 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-181 232 chr2L 11389041 11389047 chr2L 11389122 11389137 5 86 4.5 3.0 3.8 1.0 96 chr2L 11389041 3` UTR CR43681 - chr2L 11389089 3` UTR CR43681 - chr2L 11389137 3` UTR CR43681 - chr2L_5_11385001 chr2L_11385001 RAL-181 233 chr2L 11404782 11404812 chr2L 11404858 11404888 11 74 1.0 3.0 2.0 3.7 106 chr2L 11404782 intergenic not near genes chr2L 11404835 intergenic not near genes chr2L 11404888 intergenic not near genes chr2L_11_11400001 chr2L_11400001 RAL-181 234 chr2L 11413298 11413322 chr2L 11413415 11413446 9 119 2.5 1.0 1.8 3.2 148 chr2L 11413298 intergenic not near genes chr2L 11413372 intergenic not near genes chr2L 11413446 intergenic not near genes chr2L_9_11410001 chr2L_11410001 RAL-181 235 chr2L 11563638 11563670 chr2L 11568842 11568874 copia 13 5203 3.5 5.5 4.5 2.4 5236 chr2L 11563638 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_13_11565001 chr2L_11565001 RAL-181 236 chr2L 11614078 11614084 chr2L 11615548 11615565 hopper2 5 1481 1.5 5.0 3.2 1.2 1487 chr2L 11614078 intron kek2 + chr2L 11614822 intron kek2 + chr2L 11615565 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-181 237 chr2L 11661188 11661212 chr2L 11661276 11661300 12 87 4.5 7.0 5.8 1.8 112 chr2L 11661188 intergenic CR44497 - chr2L 11661244 intergenic CR44497 -,CR44479 - chr2L 11661300 intergenic CR44497 -,CR44479 - chr2L_12_11660001 chr2L_11660001 RAL-181 238 chr2L 11672137 11672166 chr2L 11672244 11672273 6 105 2.5 3.0 2.8 1.6 136 chr2L 11672137 intergenic not near genes chr2L 11672205 intergenic not near genes chr2L 11672273 intergenic not near genes chr2L_6_11670001 chr2L_11670001 RAL-181 239 chr2L 11713513 11713530 chr2L 11720977 11720990 blood 10 7465 5.0 4.0 4.5 1.8 7477 chr2L 11713513 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11720990 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-181 240 chr2L 11713531 11713539 chr2L 11720973 11721006 blood 9 7464 4.0 3.5 3.8 1.9 7475 chr2L 11713531 intergenic not near genes chr2L 11717268 intergenic not near genes chr2L 11721006 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-181 241 chr2L 11932175 11932183 chr2L 11932253 11932262 4 78 6.0 4.5 5.2 0.6 87 chr2L 11932175 intergenic not near genes chr2L 11932218 intergenic not near genes chr2L 11932262 intergenic not near genes chr2L_4_11930001 chr2L_11930001 RAL-181 242 chr2L 11952993 11953010 chr2L 11953072 11953088 4 79 3.5 4.0 3.8 0.8 95 chr2L 11952993 3` UTR CR43314 - chr2L 11953040 3` UTR CR43314 - chr2L 11953088 3` UTR CR43314 - chr2L_4_11950001 chr2L_11950001 RAL-181 243 chr2L 12067344 12067361 chr2L 12074388 12074413 297 6 7051 2.0 3.0 2.5 1.7 7069 chr2L 12067344 intergenic not near genes chr2L 12070878 intergenic not near genes chr2L 12074413 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-181 244 chr2L 12207750 12207756 chr2L 12207833 12207842 4 86 4.5 3.0 3.8 0.8 92 chr2L 12207750 intron,5` UTR aret +,CG31759 + chr2L 12207796 intron,5` UTR aret +,CG31759 + chr2L 12207842 intron,5` UTR aret +,CG31759 + chr2L_4_12205001 chr2L_12205001 RAL-181 245 chr2L 12207760 12207773 chr2L 12207826 12207845 9 75 1.5 3.0 2.2 2.8 85 chr2L 12207760 intron,5` UTR aret +,CG31759 + chr2L 12207802 intron,5` UTR aret +,CG31759 + chr2L 12207845 intron,5` UTR aret +,CG31759 + chr2L_9_12205001 chr2L_12205001 RAL-181 246 chr2L 12224890 12224901 chr2L 12224966 12224977 5 75 0.0 8.5 4.2 1.0 87 chr2L 12224890 intron aret + chr2L 12224934 intron aret + chr2L 12224977 intron aret + chr2L_5_12220001 chr2L_12220001 RAL-181 247 chr2L 12234032 12234061 chr2L 12234127 12234156 8 89 3.5 3.0 3.2 1.9 124 chr2L 12234032 intron aret + chr2L 12234094 intron aret + chr2L 12234156 intron aret + chr2L_8_12230001 chr2L_12230001 RAL-181 248 chr2L 12255860 12255887 chr2L 12255953 12255983 6 95 0.5 0.0 0.2 5.0 123 chr2L 12255860 intron aret + chr2L 12255922 intron aret + chr2L 12255983 intron aret + chr2L_6_12255001 chr2L_12255001 RAL-181 249 chr2L 12305410 12305436 chr2L 12305497 12305510 13 85 4.0 6.0 5.0 2.2 100 chr2L 12305410 intron aret + chr2L 12305460 intron aret + chr2L 12305510 intron aret + chr2L_13_12305001 chr2L_12305001 RAL-181 250 chr2L 12398672 12398683 chr2L 12398759 12398761 5 85 7.5 9.0 8.2 0.5 89 chr2L 12398672 exon Pkd2 + chr2L 12398716 exon Pkd2 + chr2L 12398761 exon Pkd2 + chr2L_5_12395001 chr2L_12395001 RAL-181 251 chr2L 12411017 12411025 chr2L 12411090 12411103 5 76 6.0 2.0 4.0 1.0 86 chr2L 12411017 intron vir-1 - chr2L 12411060 intron vir-1 - chr2L 12411103 intron vir-1 - chr2L_5_12410001 chr2L_12410001 RAL-181 252 chr2L 12411027 12411035 chr2L 12411088 12411114 4 74 2.5 2.0 2.2 1.2 87 chr2L 12411027 intron vir-1 - chr2L 12411070 intron vir-1 - chr2L 12411114 intron vir-1 - chr2L_4_12410001 chr2L_12410001 RAL-181 253 chr2L 12452739 12452751 chr2L 12452931 12452951 6 195 5.0 7.0 6.0 0.9 212 chr2L 12452739 exon CG5418 - chr2L 12452845 exon CG5418 - chr2L 12452951 intron CG5418 - chr2L_6_12450001 chr2L_12450001 RAL-181 254 chr2L 12495756 12495771 chr2L 12495905 12495932 7 158 0.5 6.0 3.2 1.7 176 chr2L 12495756 intron bun - chr2L 12495844 intron bun - chr2L 12495932 intron bun - chr2L_7_12495001 chr2L_12495001 RAL-181 255 chr2L 12499910 12499943 chr2L 12499990 12500025 12 82 1.5 8.0 4.8 2.1 115 chr2L 12499910 intron bun - chr2L 12499968 intron bun - chr2L 12500025 intron bun - chr2L_12_12495001 chr2L_12495001 RAL-181 256 chr2L 12558320 12558345 chr2L 12565447 12565474 HMS-Beagle 13 7127 2.5 2.5 2.5 3.7 7154 chr2L 12558320 intergenic not near genes chr2L 12561897 intergenic not near genes chr2L 12565474 intergenic not near genes chr2L_13_12560001 chr2L_12560001 RAL-181 257 chr2L 12570354 12570364 chr2L 12570435 12570445 4 81 2.5 0.0 1.2 1.8 91 chr2L 12570354 intergenic CR44598 - chr2L 12570400 intergenic CR44598 - chr2L 12570445 intergenic CR44598 - chr2L_4_12570001 chr2L_12570001 RAL-181 258 chr2L 12731054 12731091 chr2L 12735821 12735824 F-element 6 4761 4.0 1.5 2.8 1.6 4770 chr2L 12731054 intron MRP + chr2L 12733439 intron MRP + chr2L 12735824 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-181 259 chr2L 12739181 12739206 chr2L 12743962 12743979 Doc 12 4778 2.5 7.0 4.8 2.1 4798 chr2L 12739181 exon MRP + chr2L 12741580 intron MRP + chr2L 12743979 exon MRP + chr2L_12_12740001 chr2L_12740001 RAL-181 260 chr2L 12779745 12779761 chr2L 12780202 12780217 5 456 6.0 1.5 3.8 1.0 472 chr2L 12779745 intergenic not near genes chr2L 12779981 intergenic not near genes chr2L 12780217 intergenic not near genes chr2L_5_12775001 chr2L_12775001 RAL-181 261 chr2L 12781805 12781812 chr2L 12789248 12789255 Quasimodo 5 7443 8.5 7.0 7.8 0.6 7450 chr2L 12781805 intergenic not near genes chr2L 12785530 intergenic not near genes chr2L 12789255 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-181 262 chr2L 12835553 12835584 chr2L 12835662 12835693 7 108 1.5 1.0 1.2 3.2 140 chr2L 12835553 intergenic not near genes chr2L 12835623 intergenic not near genes chr2L 12835693 intergenic not near genes chr2L_7_12835001 chr2L_12835001 RAL-181 263 chr2L 12861694 12861731 chr2L 12863161 12863182 hobo 24 1462 4.0 8.0 6.0 3.4 1488 chr2L 12861694 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_24_12860001 chr2L_12860001 RAL-181 264 chr2L 12894021 12894047 chr2L 12895487 12895495 hobo 6 1456 12.5 6.5 9.5 0.6 1474 chr2L 12894021 intergenic not near genes chr2L 12894758 intergenic not near genes chr2L 12895495 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-181 265 chr2L 12905475 12905507 chr2L 12905559 12905591 7 84 4.5 2.5 3.5 1.6 116 chr2L 12905475 intergenic not near genes chr2L 12905533 intergenic not near genes chr2L 12905591 intergenic not near genes chr2L_7_12905001 chr2L_12905001 RAL-181 266 chr2L 12933853 12933882 chr2L 12941320 12941349 blood 13 7464 7.0 8.0 7.5 1.5 7496 chr2L 12933853 intergenic not near genes chr2L 12937601 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_13_12935001 chr2L_12935001 RAL-181 267 chr2L 13088959 13088992 chr2L 13089039 13089040 17 76 4.0 9.5 6.8 2.2 81 chr2L 13088959 intergenic not near genes chr2L 13089000 intergenic not near genes chr2L 13089040 intergenic not near genes chr2L_17_13085001 chr2L_13085001 RAL-181 268 chr2L 13227222 13227245 chr2L 13227303 13227327 15 79 6.5 6.0 6.2 2.1 105 chr2L 13227222 intergenic CG16813 + chr2L 13227274 intergenic CG16813 + chr2L 13227327 intergenic CG16813 + chr2L_15_13225001 chr2L_13225001 RAL-181 269 chr2L 13357314 13357335 chr2L 13357452 13357478 9 138 4.5 5.0 4.8 1.6 164 chr2L 13357314 intergenic not near genes chr2L 13357396 intergenic not near genes chr2L 13357478 intergenic not near genes chr2L_9_13355001 chr2L_13355001 RAL-181 270 chr2L 13398723 13398750 chr2L 13398803 13398830 6 79 0.5 1.0 0.8 3.3 107 chr2L 13398723 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398776 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398830 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_6_13395001 chr2L_13395001 RAL-181 271 chr2L 13405655 13405679 chr2L 13410451 13410476 Doc 11 4795 6.5 7.0 6.8 1.4 4821 chr2L 13405655 exon CG7110 + chr2L 13408066 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-181 272 chr2L 13449464 13449491 chr2L 13456900 13456907 Quasimodo 7 7433 3.5 4.0 3.8 1.5 7443 chr2L 13449464 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453186 intron CG42784 + chr2L 13456907 intron CG42784 + chr2L_7_13450001 chr2L_13450001 RAL-181 273 chr2L 13481453 13481475 chr2L 13482052 13482067 jockey 12 603 6.0 5.5 5.8 1.8 614 chr2L 13481453 intron CG42784 + chr2L 13481760 intron CG42784 + chr2L 13482067 intron CG42784 + chr2L_12_13480001 chr2L_13480001 RAL-181 274 chr2L 13690735 13690760 chr2L 13693113 13693141 11 2380 35.0 28.0 31.5 0.3 2406 chr2L 13690735 intron CG31814 - chr2L 13691938 intron CG31814 - chr2L 13693141 intron CG31814 - chr2L_11_13690001 chr2L_13690001 RAL-181 275 chr2L 13690521 13690550 chr2L 13693975 13694004 6 3454 30.5 4.5 17.5 0.3 3483 chr2L 13690521 exon CG31814 - chr2L 13692262 intron CG31814 - chr2L 13694004 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-181 276 chr2L 13761813 13761834 chr2L 13762924 13762944 Doc 4 1110 7.0 5.0 6.0 0.6 1131 chr2L 13761813 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762944 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-181 277 chr2L 13853085 13853116 chr2L 13862233 13862266 roo 16 9148 7.0 2.5 4.8 2.8 9181 chr2L 13853085 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_16_13855001 chr2L_13855001 RAL-181 278 chr2L 13974783 13974795 chr2L 13975171 13975197 10 392 1.5 6.5 4.0 2.0 414 chr2L 13974783 exon NimC1 - chr2L 13974990 exon NimC1 - chr2L 13975197 exon NimC1 - chr2L_10_13970001 chr2L_13970001 RAL-181 279 chr2L 14010407 14010436 chr2L 14010482 14010501 13 73 0.0 3.5 1.8 4.6 94 chr2L 14010407 intergenic not near genes chr2L 14010454 intergenic not near genes chr2L 14010501 intergenic not near genes chr2L_13_14010001 chr2L_14010001 RAL-181 280 chr2L 14056815 14056839 chr2L 14056900 14056925 6 86 2.0 10.5 6.2 0.8 110 chr2L 14056815 intron nAChRalpha5 + chr2L 14056870 intron nAChRalpha5 + chr2L 14056925 intron nAChRalpha5 + chr2L_6_14055001 chr2L_14055001 RAL-181 281 chr2L 14112754 14112773 chr2L 14112837 14112864 5 89 0.0 1.0 0.5 3.3 110 chr2L 14112754 intergenic not near genes chr2L 14112809 intergenic not near genes chr2L 14112864 intergenic not near genes chr2L_5_14110001 chr2L_14110001 RAL-181 282 chr2L 14190142 14190176 chr2L 14190718 14190747 24 573 7.0 6.0 6.5 3.2 605 chr2L 14190142 intron Dyrk2 - chr2L 14190444 intron Dyrk2 - chr2L 14190747 intron Dyrk2 - chr2L_24_14190001 chr2L_14190001 RAL-181 283 chr2L 14243820 14243837 chr2L 14243908 14243929 5 90 6.0 4.5 5.2 0.8 109 chr2L 14243820 intergenic not near genes chr2L 14243874 intergenic not near genes chr2L 14243929 intergenic not near genes chr2L_5_14240001 chr2L_14240001 RAL-181 284 chr2L 14254140 14254159 chr2L 14254217 14254236 11 76 9.5 6.5 8.0 1.2 96 chr2L 14254140 intergenic not near genes chr2L 14254188 intergenic not near genes chr2L 14254236 intergenic not near genes chr2L_11_14250001 chr2L_14250001 RAL-181 285 chr2L 14335639 14335670 chr2L 14337034 14337064 12 1386 4.0 7.5 5.8 1.8 1425 chr2L 14335639 intron CG33090 + chr2L 14336352 intron CG33090 + chr2L 14337064 intron CG33090 + chr2L_12_14335001 chr2L_14335001 RAL-181 286 chr2L 14340556 14340566 chr2L 14340632 14340642 4 76 0.0 2.5 1.2 1.8 86 chr2L 14340556 intron CG33090 + chr2L 14340599 intron CG33090 + chr2L 14340642 intron CG33090 + chr2L_4_14340001 chr2L_14340001 RAL-181 287 chr2L 14367862 14367884 chr2L 14367942 14367964 5 80 3.5 3.0 3.2 1.2 102 chr2L 14367862 intergenic not near genes chr2L 14367913 intergenic not near genes chr2L 14367964 intergenic not near genes chr2L_5_14365001 chr2L_14365001 RAL-181 288 chr2L 14378647 14378678 chr2L 14378726 14378734 7 75 1.5 0.5 1.0 3.5 87 chr2L 14378647 3` UTR ppk - chr2L 14378690 3` UTR ppk - chr2L 14378734 3` UTR ppk - chr2L_7_14375001 chr2L_14375001 RAL-181 289 chr2L 14524915 14524935 chr2L 14525404 14525420 4 488 2.0 3.0 2.5 1.1 505 chr2L 14524915 intron CG33648 + chr2L 14525168 exon CG33648 + chr2L 14525420 intron CG33648 + chr2L_4_14525001 chr2L_14525001 RAL-181 290 chr2L 14549153 14549174 chr2L 14549229 14549247 8 74 2.5 5.5 4.0 1.6 94 chr2L 14549153 intergenic CG4218 - chr2L 14549200 intergenic CG4218 - chr2L 14549247 intergenic CG4218 - chr2L_8_14545001 chr2L_14545001 RAL-181 291 chr2L 14586210 14586213 chr2L 14586282 14586288 4 73 15.5 10.0 12.8 0.3 78 chr2L 14586210 intergenic not near genes chr2L 14586249 intergenic not near genes chr2L 14586288 intergenic not near genes chr2L_4_14585001 chr2L_14585001 RAL-181 292 chr2L 14588383 14588413 chr2L 14588536 14588562 9 151 4.5 1.5 3.0 2.2 179 chr2L 14588383 intergenic CG42680 - chr2L 14588472 intergenic CG42680 - chr2L 14588562 intergenic CG42680 - chr2L_9_14585001 chr2L_14585001 RAL-181 293 chr2L 14658684 14658710 chr2L 14658763 14658791 9 76 3.0 0.5 1.8 3.2 107 chr2L 14658684 intron osp - chr2L 14658738 intron osp - chr2L 14658791 intron osp - chr2L_9_14655001 chr2L_14655001 RAL-181 294 chr2L 14661183 14661192 chr2L 14661262 14661271 4 79 0.0 2.5 1.2 1.8 88 chr2L 14661183 intron osp - chr2L 14661227 intron osp - chr2L 14661271 intron osp - chr2L_4_14660001 chr2L_14660001 RAL-181 295 chr2L 14705481 14705511 chr2L 14705563 14705594 8 79 2.0 4.0 3.0 2.0 113 chr2L 14705481 intergenic not near genes chr2L 14705538 intergenic not near genes chr2L 14705594 intergenic not near genes chr2L_8_14705001 chr2L_14705001 RAL-181 296 chr2L 14715540 14715563 chr2L 14715631 14715654 11 90 6.5 5.0 5.8 1.6 114 chr2L 14715540 intergenic not near genes chr2L 14715597 intergenic not near genes chr2L 14715654 intergenic not near genes chr2L_11_14715001 chr2L_14715001 RAL-181 297 chr2L 14757956 14757973 chr2L 14758032 14758035 8 80 3.5 3.0 3.2 1.9 79 chr2L 14757956 intergenic not near genes chr2L 14757996 intergenic not near genes chr2L 14758035 intergenic not near genes chr2L_8_14755001 chr2L_14755001 RAL-181 298 chr2L 14787093 14787122 chr2L 14787241 14787261 8 145 1.0 2.5 1.8 2.9 168 chr2L 14787093 intergenic not near genes chr2L 14787177 intergenic not near genes chr2L 14787261 intergenic not near genes chr2L_8_14785001 chr2L_14785001 RAL-181 299 chr2L 14803882 14803911 chr2L 14809082 14809098 copia 14 5201 5.5 4.0 4.8 2.4 5216 chr2L 14803882 intergenic not near genes chr2L 14806490 intergenic not near genes chr2L 14809098 intergenic not near genes chr2L_14_14805001 chr2L_14805001 RAL-181 300 chr2L 14840986 14841007 chr2L 14841073 14841094 6 86 3.0 6.5 4.8 1.0 108 chr2L 14840986 3` UTR CR43805 - chr2L 14841040 3` UTR CR43805 - chr2L 14841094 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-181 301 chr2L 15003549 15003570 chr2L 15003632 15003653 9 82 6.0 9.0 7.5 1.1 104 chr2L 15003549 intergenic not near genes chr2L 15003601 intergenic not near genes chr2L 15003653 intergenic not near genes chr2L_9_15000001 chr2L_15000001 RAL-181 302 chr2L 15175256 15175288 chr2L 15175366 15175398 11 109 1.5 3.5 2.5 3.1 142 chr2L 15175256 intron CG4168 - chr2L 15175327 intron CG4168 - chr2L 15175398 intron CG4168 - chr2L_11_15175001 chr2L_15175001 RAL-181 303 chr2L 15179510 15179539 chr2L 15179589 15179611 11 77 2.5 5.0 3.8 2.3 101 chr2L 15179510 intron CG4168 - chr2L 15179560 intron CG4168 - chr2L 15179611 intron CG4168 - chr2L_11_15175001 chr2L_15175001 RAL-181 304 chr2L 15185150 15185181 chr2L 15185234 15185264 13 83 4.0 2.5 3.2 3.1 114 chr2L 15185150 intron CG4168 - chr2L 15185207 intron CG4168 - chr2L 15185264 intron CG4168 - chr2L_13_15185001 chr2L_15185001 RAL-181 305 chr2L 15227714 15227725 chr2L 15227797 15227816 4 87 9.0 6.5 7.8 0.5 102 chr2L 15227714 intergenic not near genes chr2L 15227765 intergenic not near genes chr2L 15227816 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-181 306 chr2L 15343538 15343557 chr2L 15343621 15343624 7 80 1.5 0.0 0.8 3.9 86 chr2L 15343538 intergenic not near genes chr2L 15343581 intergenic not near genes chr2L 15343624 intergenic not near genes chr2L_7_15340001 chr2L_15340001 RAL-181 307 chr2L 15446050 15446083 chr2L 15453519 15453552 blood 5 7469 3.0 3.5 3.2 1.2 7502 chr2L 15446050 intergenic not near genes chr2L 15449801 intergenic not near genes chr2L 15453552 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-181 308 chr2L 15514319 15514332 chr2L 15514403 15514416 5 84 8.0 10.0 9.0 0.5 97 chr2L 15514319 intergenic not near genes chr2L 15514368 intergenic not near genes chr2L 15514416 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-181 309 chr2L 15535884 15535918 chr2L 15535974 15536006 13 87 6.0 4.0 5.0 2.2 122 chr2L 15535884 intergenic not near genes chr2L 15535945 intergenic not near genes chr2L 15536006 intergenic not near genes chr2L_13_15535001 chr2L_15535001 RAL-181 310 chr2L 15586422 15586441 chr2L 15593468 15593493 297 5 7050 3.0 5.5 4.2 1.0 7071 chr2L 15586422 intergenic not near genes chr2L 15589958 intergenic not near genes chr2L 15593493 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-181 311 chr2L 15887718 15887745 chr2L 15887851 15887872 15 130 5.5 4.5 5.0 2.5 154 chr2L 15887718 intergenic not near genes chr2L 15887795 intergenic not near genes chr2L 15887872 intergenic not near genes chr2L_15_15885001 chr2L_15885001 RAL-181 312 chr2L 15906189 15906210 chr2L 15906273 15906299 8 83 3.0 4.0 3.5 1.8 110 chr2L 15906189 intron beat-Ib - chr2L 15906244 intron beat-Ib - chr2L 15906299 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-181 313 chr2L 15956022 15956058 chr2L 15957489 15957521 hobo 13 1465 4.5 2.0 3.2 3.1 1499 chr2L 15956022 intron beat-Ib - chr2L 15956772 intron beat-Ib - chr2L 15957521 intron beat-Ib - chr2L_13_15955001 chr2L_15955001 RAL-181 314 chr2L 16037575 16037584 chr2L 16037652 16037660 4 76 4.0 1.0 2.5 1.1 85 chr2L 16037575 intron beat-Ic + chr2L 16037618 intron beat-Ic + chr2L 16037660 intron beat-Ic + chr2L_4_16035001 chr2L_16035001 RAL-181 315 chr2L 16051604 16051631 chr2L 16051683 16051709 17 76 5.5 2.0 3.8 3.5 105 chr2L 16051604 intron beat-Ia + chr2L 16051656 intron beat-Ia + chr2L 16051709 intron beat-Ia + chr2L_17_16050001 chr2L_16050001 RAL-181 316 chr2L 16069262 16069295 chr2L 16069343 16069377 16 78 5.0 4.0 4.5 2.9 115 chr2L 16069262 intron beat-Ia + chr2L 16069320 intron beat-Ia + chr2L 16069377 intron beat-Ia + chr2L_16_16065001 chr2L_16065001 RAL-181 317 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 31.0 36.0 33.5 0.1 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-181 318 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 27.0 36.0 31.5 0.2 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-181 319 chr2L 16243697 16243858 chr2L 16243780 16243952 10 91 2.0 4.0 3.0 2.5 255 chr2L 16243697 exon CG42818 + chr2L 16243824 exon CG42818 + chr2L 16243952 exon CG42818 + chr2L_10_16240001 chr2L_16240001 RAL-181 320 chr2L 16272255 16272289 chr2L 16272333 16272367 11 76 2.5 7.5 5.0 1.8 112 chr2L 16272255 intron crp - chr2L 16272311 intron crp - chr2L 16272367 intron crp - chr2L_11_16270001 chr2L_16270001 RAL-181 321 chr2L 16280257 16280283 chr2L 16281425 16281454 1360 16 1167 3.0 8.0 5.5 2.5 1197 chr2L 16280257 intron crp - chr2L 16280856 intron crp - chr2L 16281454 intron crp - chr2L_16_16280001 chr2L_16280001 RAL-181 322 chr2L 16363965 16363973 chr2L 16364211 16364217 4 246 2.0 2.5 2.2 1.2 252 chr2L 16363965 intergenic not near genes chr2L 16364091 intergenic not near genes chr2L 16364217 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-181 323 chr2L 16391805 16391820 chr2L 16391881 16391895 4 74 3.5 1.0 2.2 1.2 90 chr2L 16391805 intergenic not near genes chr2L 16391850 intergenic not near genes chr2L 16391895 intergenic not near genes chr2L_4_16390001 chr2L_16390001 RAL-181 324 chr2L 16572211 16572233 chr2L 16572304 16572326 9 92 3.5 0.0 1.8 3.2 115 chr2L 16572211 intron CG42389 + chr2L 16572268 intron CG42389 + chr2L 16572326 intron CG42389 + chr2L_9_16570001 chr2L_16570001 RAL-181 325 chr2L 16654701 16654735 chr2L 16654794 16654808 14 88 0.5 2.0 1.2 6.4 107 chr2L 16654701 intron CG42389 + chr2L 16654754 intron CG42389 + chr2L 16654808 intron CG42389 + chr2L_14_16650001 chr2L_16650001 RAL-181 326 chr2L 16670419 16670448 chr2L 16670496 16670525 6 76 1.5 0.0 0.8 3.3 106 chr2L 16670419 intron Trpgamma - chr2L 16670472 intron Trpgamma - chr2L 16670525 intron Trpgamma - chr2L_6_16670001 chr2L_16670001 RAL-181 327 chr2L 16728928 16728956 chr2L 16729562 16729591 4 634 0.0 2.0 1.0 2.0 663 chr2L 16728928 intergenic not near genes chr2L 16729260 intergenic not near genes chr2L 16729591 intergenic CG31812 + chr2L_4_16725001 chr2L_16725001 RAL-181 328 chr2L 16939995 16940015 chr2L 16940072 16940093 7 73 2.0 7.5 4.8 1.2 98 chr2L 16939995 intergenic not near genes chr2L 16940044 intergenic not near genes chr2L 16940093 intergenic not near genes chr2L_7_16940001 chr2L_16940001 RAL-181 329 chr2L 16958103 16958136 chr2L 16962891 16962921 Doc 10 4787 0.5 5.5 3.0 2.5 4818 chr2L 16958103 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962921 intergenic not near genes chr2L_10_16960001 chr2L_16960001 RAL-181 330 chr2L 17032501 17032523 chr2L 17032586 17032608 5 85 3.5 2.5 3.0 1.2 107 chr2L 17032501 intergenic not near genes chr2L 17032554 intergenic not near genes chr2L 17032608 intergenic not near genes chr2L_5_17030001 chr2L_17030001 RAL-181 331 chr2L 17033927 17033949 chr2L 17034001 17034034 4 82 1.5 2.5 2.0 1.3 107 chr2L 17033927 intergenic not near genes chr2L 17033980 intergenic not near genes chr2L 17034034 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-181 332 chr2L 17056744 17056770 chr2L 17056824 17056850 7 79 1.0 3.0 2.0 2.3 106 chr2L 17056744 intergenic not near genes chr2L 17056797 intergenic not near genes chr2L 17056850 intergenic not near genes chr2L_7_17055001 chr2L_17055001 RAL-181 333 chr2L 17070210 17070215 chr2L 17070302 17070311 4 94 0.5 1.5 1.0 2.0 101 chr2L 17070210 intergenic not near genes chr2L 17070260 intergenic not near genes chr2L 17070311 intergenic not near genes chr2L_4_17070001 chr2L_17070001 RAL-181 334 chr2L 17087393 17087402 chr2L 17087496 17087511 5 112 3.0 4.0 3.5 1.1 118 chr2L 17087393 intergenic CG12620 + chr2L 17087452 intergenic CG12620 + chr2L 17087511 intergenic CG12620 + chr2L_5_17085001 chr2L_17085001 RAL-181 335 chr2L 17101017 17101048 chr2L 17101560 17101578 10 534 18.0 19.5 18.8 0.5 561 chr2L 17101017 intergenic not near genes chr2L 17101298 intergenic not near genes chr2L 17101578 intergenic not near genes chr2L_10_17100001 chr2L_17100001 RAL-181 336 chr2L 17122775 17122809 chr2L 17122859 17122894 8 84 3.5 4.5 4.0 1.6 119 chr2L 17122775 intergenic not near genes chr2L 17122834 intergenic CG31784 - chr2L 17122894 intergenic CG31784 - chr2L_8_17120001 chr2L_17120001 RAL-181 337 chr2L 17157849 17157877 chr2L 17157931 17157957 4 81 4.0 0.0 2.0 1.3 108 chr2L 17157849 intron,intron CG34106 +,beat-IIIa + chr2L 17157903 intron,intron CG34106 +,beat-IIIa + chr2L 17157957 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-181 338 chr2L 17158726 17158750 chr2L 17158828 17158853 11 100 5.5 1.5 3.5 2.4 127 chr2L 17158726 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158790 intron,intron CG34106 +,beat-IIIa + chr2L 17158853 intron,intron CG34106 +,beat-IIIa + chr2L_11_17155001 chr2L_17155001 RAL-181 339 chr2L 17159857 17159880 chr2L 17159940 17159959 9 81 2.5 2.5 2.5 2.6 102 chr2L 17159857 intron,intron CG34106 +,beat-IIIa + chr2L 17159908 intron,intron CG34106 +,beat-IIIa + chr2L 17159959 intron,intron CG34106 +,beat-IIIa + chr2L_9_17155001 chr2L_17155001 RAL-181 340 chr2L 17163603 17163638 chr2L 17163692 17163727 10 87 3.0 3.5 3.2 2.4 124 chr2L 17163603 intron,intron CG34106 +,beat-IIIa + chr2L 17163665 intron,intron CG34106 +,beat-IIIa + chr2L 17163727 intron,intron CG34106 +,beat-IIIa + chr2L_10_17160001 chr2L_17160001 RAL-181 341 chr2L 17167568 17167592 chr2L 17167809 17167833 pogo 7 239 3.0 5.0 4.0 1.4 265 chr2L 17167568 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167833 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-181 342 chr2L 17206173 17206203 chr2L 17206258 17206288 15 85 6.5 2.5 4.5 2.7 115 chr2L 17206173 intron beat-IIIc - chr2L 17206230 intron beat-IIIc - chr2L 17206288 intron beat-IIIc - chr2L_15_17205001 chr2L_17205001 RAL-181 343 chr2L 17239042 17239070 chr2L 17239126 17239154 8 82 1.5 3.5 2.5 2.3 112 chr2L 17239042 intron beat-IIIc - chr2L 17239098 intron beat-IIIc - chr2L 17239154 intron beat-IIIc - chr2L_8_17235001 chr2L_17235001 RAL-181 344 chr2L 17264745 17264776 chr2L 17264825 17264856 5 80 0.5 4.5 2.5 1.4 111 chr2L 17264745 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264856 intergenic not near genes chr2L_5_17260001 chr2L_17260001 RAL-181 345 chr2L 17273199 17273221 chr2L 17277971 17278004 F-element 10 4781 9.0 7.0 8.0 1.1 4805 chr2L 17273199 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278004 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-181 346 chr2L 17303436 17303469 chr2L 17303614 17303646 13 176 3.5 5.5 4.5 2.4 210 chr2L 17303436 intergenic not near genes chr2L 17303541 intergenic not near genes chr2L 17303646 intergenic not near genes chr2L_13_17300001 chr2L_17300001 RAL-181 347 chr2L 17344891 17344908 chr2L 17344968 17344985 8 75 0.0 3.0 1.5 3.2 94 chr2L 17344891 intergenic not near genes chr2L 17344938 intergenic not near genes chr2L 17344985 intergenic not near genes chr2L_8_17340001 chr2L_17340001 RAL-181 348 chr2L 17360026 17360043 chr2L 17360204 17360221 5 178 3.0 0.0 1.5 2.0 195 chr2L 17360026 intergenic not near genes chr2L 17360124 intergenic not near genes chr2L 17360221 intergenic not near genes chr2L_5_17360001 chr2L_17360001 RAL-181 349 chr2L 17386012 17386032 chr2L 17386093 17386113 10 78 2.5 0.5 1.5 4.0 101 chr2L 17386012 intron CLIP-190 + chr2L 17386062 intron CLIP-190 + chr2L 17386113 intron CLIP-190 + chr2L_10_17385001 chr2L_17385001 RAL-181 350 chr2L 17493805 17493824 chr2L 17493910 17493929 9 104 5.0 5.5 5.2 1.5 124 chr2L 17493805 intron qua - chr2L 17493867 intron qua - chr2L 17493929 intron qua - chr2L_9_17490001 chr2L_17490001 RAL-181 351 chr2L 17543598 17543623 chr2L 17543691 17543716 8 92 6.5 3.0 4.8 1.4 118 chr2L 17543598 intergenic not near genes chr2L 17543657 intergenic not near genes chr2L 17543716 intergenic not near genes chr2L_8_17540001 chr2L_17540001 RAL-181 352 chr2L 17549052 17549067 chr2L 17549277 17549284 7 223 7.0 7.0 7.0 0.9 232 chr2L 17549052 intergenic not near genes chr2L 17549168 intergenic not near genes chr2L 17549284 intergenic not near genes chr2L_7_17545001 chr2L_17545001 RAL-181 353 chr2L 17637176 17637194 chr2L 17637261 17637279 4 84 2.0 2.5 2.2 1.2 103 chr2L 17637176 intergenic not near genes chr2L 17637228 intergenic not near genes chr2L 17637279 intergenic not near genes chr2L_4_17635001 chr2L_17635001 RAL-181 354 chr2L 17796030 17796042 chr2L 17796105 17796123 6 80 3.0 2.5 2.8 1.6 93 chr2L 17796030 intron CadN2 - chr2L 17796076 intron CadN2 - chr2L 17796123 intron CadN2 - chr2L_6_17795001 chr2L_17795001 RAL-181 355 chr2L 17819922 17819953 chr2L 17825125 17825152 copia 9 5201 2.0 3.5 2.8 2.4 5230 chr2L 17819922 intron CadN2 - chr2L 17822537 intron CadN2 - chr2L 17825152 intron CadN2 - chr2L_9_17820001 chr2L_17820001 RAL-181 356 chr2L 17905634 17905656 chr2L 17905854 17905882 5 222 4.5 2.0 3.2 1.2 248 chr2L 17905634 intergenic not near genes chr2L 17905758 intergenic not near genes chr2L 17905882 intergenic not near genes chr2L_5_17905001 chr2L_17905001 RAL-181 357 chr2L 17911963 17911989 chr2L 17914141 17914161 pogo 6 2173 5.0 5.5 5.2 1.0 2198 chr2L 17911963 intergenic not near genes chr2L 17913062 intergenic not near genes chr2L 17914161 intergenic CG43271 - chr2L_6_17910001 chr2L_17910001 RAL-181 358 chr2L 17951947 17951972 chr2L 17953414 17953436 hobo 9 1466 3.0 4.0 3.5 2.0 1489 chr2L 17951947 intergenic CR44398 -,CR44397 - chr2L 17952692 intergenic not near genes chr2L 17953436 intergenic not near genes chr2L_9_17950001 chr2L_17950001 RAL-181 359 chr2L 18002111 18002130 chr2L 18002271 18002293 8 161 5.5 4.5 5.0 1.3 182 chr2L 18002111 intergenic not near genes chr2L 18002202 intergenic not near genes chr2L 18002293 intergenic not near genes chr2L_8_18000001 chr2L_18000001 RAL-181 360 chr2L 18051878 18051906 chr2L 18061025 18061053 roo 12 9144 6.5 2.0 4.2 2.3 9175 chr2L 18051878 intron rdo + chr2L 18056466 intron rdo + chr2L 18061053 intron rdo + chr2L_12_18055001 chr2L_18055001 RAL-181 361 chr2L 18111243 18111270 chr2L 18111334 18111345 11 88 4.0 3.0 3.5 2.4 102 chr2L 18111243 intergenic not near genes chr2L 18111294 intergenic not near genes chr2L 18111345 intergenic not near genes chr2L_11_18110001 chr2L_18110001 RAL-181 362 chr2L 18230273 18230308 chr2L 18230356 18230389 9 80 5.0 4.5 4.8 1.6 116 chr2L 18230273 intron CG42750 - chr2L 18230331 intron CG42750 - chr2L 18230389 intron CG42750 - chr2L_9_18230001 chr2L_18230001 RAL-181 363 chr2L 18254552 18254569 chr2L 18254624 18254651 12 79 7.5 7.0 7.2 1.5 99 chr2L 18254552 intron CG42750 - chr2L 18254602 intron CG42750 - chr2L 18254651 intron CG42750 - chr2L_12_18250001 chr2L_18250001 RAL-181 364 chr2L 18264138 18264167 chr2L 18264226 18264246 8 83 3.0 0.0 1.5 3.2 108 chr2L 18264138 intron CG42750 - chr2L 18264192 intron CG42750 - chr2L 18264246 intron CG42750 - chr2L_8_18260001 chr2L_18260001 RAL-181 365 chr2L 18291529 18291559 chr2L 18291627 18291657 5 98 0.5 0.0 0.2 4.2 128 chr2L 18291529 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291593 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291657 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_5_18290001 chr2L_18290001 RAL-181 366 chr2L 18353205 18353212 chr2L 18353279 18353289 5 76 6.0 6.5 6.2 0.7 84 chr2L 18353205 intron Fas3 + chr2L 18353247 intron Fas3 + chr2L 18353289 intron Fas3 + chr2L_5_18350001 chr2L_18350001 RAL-181 367 chr2L 18353215 18353229 chr2L 18353278 18353298 8 71 3.0 6.0 4.5 1.5 83 chr2L 18353215 intron Fas3 + chr2L 18353256 intron Fas3 + chr2L 18353298 intron Fas3 + chr2L_8_18350001 chr2L_18350001 RAL-181 368 chr2L 18364278 18364286 chr2L 18364368 18364385 4 97 3.0 3.5 3.2 1.0 107 chr2L 18364278 intron Fas3 + chr2L 18364332 intron Fas3 + chr2L 18364385 intron Fas3 + chr2L_4_18360001 chr2L_18360001 RAL-181 369 chr2L 18408023 18408055 chr2L 18412807 18412830 Doc 9 4783 6.5 4.0 5.2 1.5 4807 chr2L 18408023 intergenic not near genes chr2L 18410426 intergenic not near genes chr2L 18412830 intergenic not near genes chr2L_9_18410001 chr2L_18410001 RAL-181 370 chr2L 18812559 18812590 chr2L 18812822 18812853 14 262 1.0 4.5 2.8 3.7 294 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812706 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_14_18810001 chr2L_18810001 RAL-181 371 chr2L 18883851 18883889 chr2L 18883933 18883971 24 79 4.0 6.0 5.0 4.0 120 chr2L 18883851 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883971 intergenic not near genes chr2L_24_18880001 chr2L_18880001 RAL-181 372 chr2L 18926585 18926591 chr2L 18926685 18926698 7 105 1.5 0.5 1.0 3.5 113 chr2L 18926585 intron ssp3 - chr2L 18926642 intron ssp3 - chr2L 18926698 intron ssp3 - chr2L_7_18925001 chr2L_18925001 RAL-181 373 chr2L 19024096 19024097 chr2L 21768291 21768291 11 2744195 25.5 25.0 25.2 0.4 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_11_20395001 chr2L_20395001 RAL-181 374 chr2L 19070274 19070300 chr2L 19070360 19070393 13 87 6.0 3.0 4.5 2.4 119 chr2L 19070274 intergenic CG10702 - chr2L 19070334 intergenic CG10702 - chr2L 19070393 intergenic not near genes chr2L_13_19070001 chr2L_19070001 RAL-181 375 chr2L 19101473 19101507 chr2L 19101656 19101675 9 177 53.0 37.5 45.2 0.2 202 chr2L 19101473 intron Lim3 - chr2L 19101574 intron Lim3 - chr2L 19101675 intron Lim3 - chr2L_9_19100001 chr2L_19100001 RAL-181 376 chr2L 19147369 19147402 chr2L 19154403 19154437 297 14 7032 3.5 6.5 5.0 2.3 7068 chr2L 19147369 intron brat + chr2L 19150903 intron brat + chr2L 19154437 intron brat + chr2L_14_19150001 chr2L_19150001 RAL-181 377 chr2L 19309620 19309649 chr2L 19309700 19309712 17 78 6.5 4.5 5.5 2.6 92 chr2L 19309620 intergenic not near genes chr2L 19309666 intergenic not near genes chr2L 19309712 intergenic not near genes chr2L_17_19305001 chr2L_19305001 RAL-181 378 chr2L 19316195 19316220 chr2L 19316272 19316297 7 76 4.5 0.5 2.5 2.0 102 chr2L 19316195 intergenic not near genes chr2L 19316246 intergenic not near genes chr2L 19316297 intergenic not near genes chr2L_7_19315001 chr2L_19315001 RAL-181 379 chr2L 19340199 19340231 chr2L 19340276 19340303 16 71 4.5 9.5 7.0 2.0 104 chr2L 19340199 exon dnt - chr2L 19340251 exon dnt - chr2L 19340303 exon dnt - chr2L_16_19340001 chr2L_19340001 RAL-181 380 chr2L 19345014 19345033 chr2L 19357223 19357242 blood 8 12208 8.5 5.5 7.0 1.0 12228 chr2L 19345014 intron dnt - chr2L 19351128 intron dnt - chr2L 19357242 intron dnt - chr2L_8_19350001 chr2L_19350001 RAL-181 381 chr2L 19345036 19345050 chr2L 19357216 19357249 blood 6 12194 4.0 5.0 4.5 1.1 12213 chr2L 19345036 intron dnt - chr2L 19351142 intron dnt - chr2L 19357249 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-181 382 chr2L 19357546 19357569 chr2L 19357636 19357644 4 86 5.0 7.5 6.2 0.6 98 chr2L 19357546 intron dnt - chr2L 19357595 intron dnt - chr2L 19357644 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-181 383 chr2L 19378340 19378373 chr2L 19378422 19378456 21 81 4.5 5.0 4.8 3.6 116 chr2L 19378340 intergenic not near genes chr2L 19378398 intergenic not near genes chr2L 19378456 intergenic not near genes chr2L_21_19375001 chr2L_19375001 RAL-181 384 chr2L 19383996 19384026 chr2L 19384090 19384091 9 89 5.0 4.5 4.8 1.6 95 chr2L 19383996 exon fon - chr2L 19384044 exon fon - chr2L 19384091 exon fon - chr2L_9_19380001 chr2L_19380001 RAL-181 385 chr2L 19441075 19441088 chr2L 19441152 19441165 5 77 8.0 12.0 10.0 0.5 90 chr2L 19441075 intron CG10237 - chr2L 19441120 intron CG10237 - chr2L 19441165 5` UTR CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-181 386 chr2L 19486883 19486910 chr2L 19486962 19486989 6 79 1.5 3.0 2.2 1.9 106 chr2L 19486883 intergenic CG13084 + chr2L 19486936 intergenic CG13084 + chr2L 19486989 intergenic CG13084 +,CG13083 + chr2L_6_19485001 chr2L_19485001 RAL-181 387 chr2L 19560027 19560038 chr2L 19560276 19560287 9 251 3.0 9.5 6.2 1.2 260 chr2L 19560027 exon Tep5 + chr2L 19560157 exon Tep5 + chr2L 19560287 intron Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-181 388 chr2L 19620093 19620132 chr2L 19621082 19621121 jockey 24 987 7.5 9.5 8.5 2.5 1028 chr2L 19620093 intron Lar + chr2L 19620607 intron Lar + chr2L 19621121 intron Lar + chr2L_24_19620001 chr2L_19620001 RAL-181 389 chr2L 19630995 19631010 chr2L 19631551 19631567 7 564 4.0 5.0 4.5 1.3 572 chr2L 19630995 intron Lar + chr2L 19631281 intron Lar + chr2L 19631567 intron Lar + chr2L_7_19630001 chr2L_19630001 RAL-181 390 chr2L 19638534 19638570 chr2L 19638620 19638658 27 87 7.0 3.0 5.0 4.5 124 chr2L 19638534 intron Lar + chr2L 19638596 intron Lar + chr2L 19638658 intron Lar + chr2L_27_19635001 chr2L_19635001 RAL-181 391 chr2L 19652573 19652603 chr2L 19674009 19674039 opus 13 21433 2.5 3.0 2.8 3.4 21466 chr2L 19652573 intron Lar + chr2L 19663306 intron Lar + chr2L 19674039 intron Lar + chr2L_13_19660001 chr2L_19660001 RAL-181 392 chr2L 19703539 19703567 chr2L 19712675 19712703 roo 11 9135 4.5 6.5 5.5 1.7 9164 chr2L 19703539 intron Lar + chr2L 19708121 intron Lar + chr2L 19712703 intron Lar + chr2L_11_19705001 chr2L_19705001 RAL-181 393 chr2L 19737362 19737387 chr2L 19740822 19740856 1360 12 3461 6.0 6.5 6.2 1.7 3494 chr2L 19737362 intergenic Nf-YB + chr2L 19739109 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_12_19735001 chr2L_19735001 RAL-181 394 chr2L 19754871 19754903 chr2L 19754955 19754975 10 80 3.0 6.5 4.8 1.7 104 chr2L 19754871 intron CG10631 - chr2L 19754923 intron CG10631 - chr2L 19754975 intron CG10631 - chr2L_10_19750001 chr2L_19750001 RAL-181 395 chr2L 19762808 19762834 chr2L 19763050 19763076 pogo 9 239 5.0 3.0 4.0 1.8 268 chr2L 19762808 5` UTR fbp - chr2L 19762942 intron fbp - chr2L 19763076 intron fbp - chr2L_9_19760001 chr2L_19760001 RAL-181 396 chr2L 19821796 19821821 chr2L 19821873 19821894 6 75 2.5 2.5 2.5 1.7 98 chr2L 19821796 intron sick + chr2L 19821845 intron sick + chr2L 19821894 intron sick + chr2L_6_19820001 chr2L_19820001 RAL-181 397 chr2L 19824412 19824429 chr2L 19824495 19824512 4 83 0.5 2.5 1.5 1.6 100 chr2L 19824412 intron sick + chr2L 19824462 intron sick + chr2L 19824512 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-181 398 chr2L 19878990 19879015 chr2L 19879199 19879224 7 206 1.0 5.5 3.2 1.7 234 chr2L 19878990 intron sick + chr2L 19879107 intron sick + chr2L 19879224 intron sick + chr2L_7_19875001 chr2L_19875001 RAL-181 399 chr2L 19898958 19898991 chr2L 19899098 19899131 12 138 4.0 3.0 3.5 2.7 173 chr2L 19898958 intron sick + chr2L 19899044 intron sick + chr2L 19899131 intron sick + chr2L_12_19895001 chr2L_19895001 RAL-181 400 chr2L 20005886 20005900 chr2L 20010947 20010976 flea 6 5073 3.5 1.0 2.2 1.9 5090 chr2L 20005886 intron CG43861 - chr2L 20008431 intron CG43861 - chr2L 20010976 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-181 401 chr2L 20079516 20079548 chr2L 20079636 20079669 4 120 1.5 1.5 1.5 1.6 153 chr2L 20079516 intron,intron neb +,fok - chr2L 20079592 intron,intron neb +,fok - chr2L 20079669 intron,intron neb +,fok - chr2L_4_20075001 chr2L_20075001 RAL-181 402 chr2L 20272121 20272145 chr2L 20282823 20282853 copia 8 10707 4.5 3.0 3.8 1.7 10732 chr2L 20272121 intergenic not near genes chr2L 20277487 intergenic not near genes chr2L 20282853 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-181 403 chr2L 20296511 20296541 chr2L 20296592 20296622 13 81 1.5 6.5 4.0 2.6 111 chr2L 20296511 intergenic CR43414 - chr2L 20296566 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_13_20295001 chr2L_20295001 RAL-181 404 chr2L 20310882 20310921 chr2L 20310961 20310983 6 74 0.0 4.5 2.2 1.9 101 chr2L 20310882 intergenic spir + chr2L 20310932 intergenic spir + chr2L 20310983 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-181 405 chr2L 20549135 20549155 chr2L 20549217 20549230 10 81 3.0 5.5 4.2 1.9 95 chr2L 20549135 intergenic not near genes chr2L 20549182 intergenic not near genes chr2L 20549230 intergenic not near genes chr2L_10_20545001 chr2L_20545001 RAL-181 406 chr2L 20550670 20550672 chr2L 20550737 20550750 4 76 0.5 8.5 4.5 0.7 80 chr2L 20550670 intergenic not near genes chr2L 20550710 intergenic not near genes chr2L 20550750 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-181 407 chr2L 20553187 20553220 chr2L 20553263 20553296 16 74 3.5 2.5 3.0 4.0 109 chr2L 20553187 intergenic not near genes chr2L 20553242 intergenic not near genes chr2L 20553296 intergenic not near genes chr2L_16_20550001 chr2L_20550001 RAL-181 408 chr2L 20563555 20563560 chr2L 20563632 20563636 6 76 5.0 4.5 4.8 1.0 81 chr2L 20563555 intron CR45347 + chr2L 20563596 intron CR45347 + chr2L 20563636 intron CR45347 + chr2L_6_20560001 chr2L_20560001 RAL-181 409 chr2L 20568662 20568686 chr2L 20569052 20569076 X-element 9 390 3.5 3.5 3.5 2.0 414 chr2L 20568662 intron CR45347 + chr2L 20568869 intron CR45347 + chr2L 20569076 intron CR45347 + chr2L_9_20565001 chr2L_20565001 RAL-181 410 chr2L 20576217 20576240 chr2L 20583685 20583709 blood 7 7466 7.0 7.0 7.0 0.9 7492 chr2L 20576217 intergenic CR45347 + chr2L 20579963 intergenic not near genes chr2L 20583709 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-181 411 chr2L 20601793 20601811 chr2L 20601864 20601888 6 75 4.5 1.5 3.0 1.5 95 chr2L 20601793 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601888 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-181 412 chr2L 20602720 20602747 chr2L 20602808 20602833 5 88 1.0 3.5 2.2 1.6 113 chr2L 20602720 intron CR44909 - chr2L 20602776 intron CR44909 - chr2L 20602833 intron CR44909 - chr2L_5_20600001 chr2L_20600001 RAL-181 413 chr2L 20607655 20607669 chr2L 20607715 20607746 8 72 4.5 6.0 5.2 1.3 91 chr2L 20607655 intron,3` UTR CR44909 -,CR43608 - chr2L 20607700 intron,3` UTR CR44909 -,CR43608 - chr2L 20607746 intron,3` UTR CR44909 -,CR43608 - chr2L_8_20605001 chr2L_20605001 RAL-181 414 chr2L 20639511 20639532 chr2L 20639787 20639808 INE-1 9 274 2.5 8.5 5.5 1.4 297 chr2L 20639511 intergenic not near genes chr2L 20639660 intergenic CG31680 + chr2L 20639808 intergenic CG31680 + chr2L_9_20635001 chr2L_20635001 RAL-181 415 chr2L 20668690 20668722 chr2L 20668766 20668788 7 74 2.5 4.0 3.2 1.7 98 chr2L 20668690 intron CG31678 - chr2L 20668739 intron CG31678 - chr2L 20668788 intron CG31678 - chr2L_7_20665001 chr2L_20665001 RAL-181 416 chr2L 20695805 20695828 chr2L 20695893 20695915 7 88 2.0 4.0 3.0 1.8 110 chr2L 20695805 intron Hr38 - chr2L 20695860 intron Hr38 - chr2L 20695915 intron Hr38 - chr2L_7_20695001 chr2L_20695001 RAL-181 417 chr2L 20792004 20792035 chr2L 20792254 20792285 16 247 5.5 6.0 5.8 2.4 281 chr2L 20792004 intron vari - chr2L 20792144 exon vari - chr2L 20792285 intron vari - chr2L_16_20790001 chr2L_20790001 RAL-181 418 chr2L 20826517 20826546 chr2L 20826597 20826624 8 78 2.5 4.5 3.5 1.8 107 chr2L 20826517 intron CG9331 + chr2L 20826570 intron CG9331 + chr2L 20826624 intron CG9331 + chr2L_8_20825001 chr2L_20825001 RAL-181 419 chr2L 20835810 20835833 chr2L 20836527 20836550 Quasimodo 6 714 2.5 2.5 2.5 1.7 740 chr2L 20835810 5` UTR Oseg5 - chr2L 20836180 intergenic Oseg5 -,Spn38F - chr2L 20836550 intergenic Spn38F - chr2L_6_20835001 chr2L_20835001 RAL-181 420 chr2L 20840026 20840052 chr2L 20840237 20840264 13 208 5.5 4.0 4.8 2.2 238 chr2L 20840026 intergenic not near genes chr2L 20840145 intergenic not near genes chr2L 20840264 intergenic CG31676 + chr2L_13_20840001 chr2L_20840001 RAL-181 421 chr2L 20846761 20846786 chr2L 20846845 20846870 4 84 9.5 2.5 6.0 0.6 109 chr2L 20846761 intron CG31676 + chr2L 20846816 intron CG31676 + chr2L 20846870 intron CG31676 + chr2L_4_20845001 chr2L_20845001 RAL-181 422 chr2L 20891535 20891546 chr2L 20896636 20896645 jockey 5 5099 2.0 4.0 3.0 1.2 5110 chr2L 20891535 intron,intron CG43739 -,sky - chr2L 20894090 intron,intron CG43739 -,sky - chr2L 20896645 intron,intron CG43739 -,sky - chr2L_5_20890001 chr2L_20890001 RAL-181 423 chr2L 20901473 20901478 chr2L 20902627 20902642 1360 6 1161 6.0 6.5 6.2 0.8 1169 chr2L 20901473 intron,intron CG43739 -,sky - chr2L 20902058 intron,intron CG43739 -,sky - chr2L 20902642 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-181 424 chr2L 20901479 20901488 chr2L 20902625 20902652 1360 4 1160 5.5 6.5 6.0 0.6 1173 chr2L 20901479 intron,intron CG43739 -,sky - chr2L 20902066 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-181 425 chr2L 20976654 20976669 chr2L 20981457 20981480 X-element 7 4812 5.0 3.5 4.2 1.3 4826 chr2L 20976654 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981480 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-181 426 chr2L 21020275 21020306 chr2L 21023948 21023983 NOF 12 3675 5.5 2.5 4.0 2.4 3708 chr2L 21020275 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_12_21020001 chr2L_21020001 RAL-181 427 chr2L 21041135 21041168 chr2L 21049395 21049427 Tirant 14 8259 3.0 6.5 4.8 2.4 8292 chr2L 21041135 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_14_21045001 chr2L_21045001 RAL-181 428 chr2L 21119281 21119307 chr2L 21119365 21119387 12 83 3.5 4.0 3.8 2.5 106 chr2L 21119281 intron Nhe2 + chr2L 21119334 intron Nhe2 + chr2L 21119387 intron Nhe2 + chr2L_12_21115001 chr2L_21115001 RAL-181 429 chr2L 21355602 21355633 chr2L 21355747 21355775 6 137 2.5 0.5 1.5 2.4 173 chr2L 21355602 intron Tsp39D + chr2L 21355688 intron Tsp39D + chr2L 21355775 intron Tsp39D + chr2L_6_21355001 chr2L_21355001 RAL-181 430 chr2L 21597036 21597057 chr2L 21604778 21604801 roo 7 7743 4.0 5.0 4.5 1.3 7765 chr2L 21597036 intergenic not near genes chr2L 21600918 intergenic not near genes chr2L 21604801 intergenic not near genes chr2L_7_21600001 chr2L_21600001 RAL-181 431 chr2L 21683881 21683886 chr2L 21683963 21683969 5 82 5.5 12.5 9.0 0.5 88 chr2L 21683881 intergenic CG31619 + chr2L 21683925 intergenic CG31619 + chr2L 21683969 intergenic CG31619 + chr2L_5_21680001 chr2L_21680001 RAL-181 432 chr2L 21683887 21683895 chr2L 21683951 21683963 5 68 4.0 10.5 7.2 0.6 76 chr2L 21683887 intergenic CG31619 + chr2L 21683925 intergenic CG31619 + chr2L 21683963 intergenic CG31619 + chr2L_5_21680001 chr2L_21680001 RAL-181 433 chr2L 21855477 21855513 chr2L 21855563 21855600 9 85 2.0 0.5 1.2 4.1 123 chr2L 21855477 intron CR44917 + chr2L 21855538 intron CR44917 + chr2L 21855600 intron CR44917 + chr2L_9_21855001 chr2L_21855001 RAL-181 434 chr2L 21976191 21976224 chr2L 21976357 21976376 11 162 2.0 7.5 4.8 1.9 185 chr2L 21976191 intergenic not near genes chr2L 21976284 intergenic not near genes chr2L 21976376 intergenic not near genes chr2L_11_21975001 chr2L_21975001 RAL-181 435 chr2L 21981684 21981716 chr2L 21990849 21990881 roo 27 9162 2.5 6.5 4.5 4.9 9197 chr2L 21981684 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_27_21985001 chr2L_21985001 RAL-181 436 chr2L 21994622 21994649 chr2L 21994698 21994725 9 74 3.5 2.5 3.0 2.2 103 chr2L 21994622 intergenic not near genes chr2L 21994674 intergenic not near genes chr2L 21994725 intergenic not near genes chr2L_9_21990001 chr2L_21990001 RAL-181 437 chr2L 22212137 22212159 chr2L 22212684 22212699 4 545 0.5 0.0 0.2 3.3 562 chr2L 22212137 intron Ir40a - chr2L 22212418 intron Ir40a - chr2L 22212699 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-181 438 chr2L 22258615 22258637 chr2L 22260739 22260760 G6 6 2120 5.0 3.0 4.0 1.2 2145 chr2L 22258615 intergenic Tif-IA + chr2L 22259688 intergenic not near genes chr2L 22260760 intergenic not near genes chr2L_6_22255001 chr2L_22255001 RAL-181 439 chr2L 22294115 22294127 chr2L 22294182 22294204 5 75 3.5 4.0 3.8 1.0 89 chr2L 22294115 intergenic not near genes chr2L 22294160 intergenic not near genes chr2L 22294204 intergenic not near genes chr2L_5_22290001 chr2L_22290001 RAL-181 440 chr2L 22350266 22350296 chr2L 22350364 22350389 14 98 3.5 5.5 4.5 2.5 123 chr2L 22350266 intron CG17018 + chr2L 22350328 intron CG17018 + chr2L 22350389 intron CG17018 + chr2L_14_22350001 chr2L_22350001 RAL-181 441 chr2L 22490489 22490512 chr2L 22497637 22497645 springer 4 7138 0.0 0.0 0.0 4.0 7156 chr2L 22490489 intergenic not near genes chr2L 22494067 intergenic not near genes chr2L 22497645 intergenic not near genes chr2L_4_22490001 chr2L_22490001 RAL-181 442 chr2L 22490515 22490528 chr2L 22497636 22497645 springer 10 7126 0.0 0.0 0.0 10.0 7130 chr2L 22490515 intergenic not near genes chr2L 22494080 intergenic not near genes chr2L 22497645 intergenic not near genes chr2L_10_22490001 chr2L_22490001 RAL-181 443 chr2L 22510410 22510440 chr2L 22510619 22510641 13 201 5.0 3.0 4.0 2.6 231 chr2L 22510410 intergenic not near genes chr2L 22510526 intergenic not near genes chr2L 22510641 intergenic not near genes chr2L_13_22510001 chr2L_22510001 RAL-181 444 chr2L 22574139 22574149 chr2L 22574446 22574467 8 317 2.0 10.0 6.0 1.1 328 chr2L 22574139 intergenic not near genes chr2L 22574303 intergenic not near genes chr2L 22574467 intergenic not near genes chr2L_8_22570001 chr2L_22570001 RAL-181 445 chr2L 22642663 22642688 chr2L 22642739 22642754 8 71 1.5 4.5 3.0 2.0 91 chr2L 22642663 intron CG40006 - chr2L 22642708 intron CG40006 - chr2L 22642754 intron CG40006 - chr2L_8_22640001 chr2L_22640001 RAL-181 446 chr2L 22674072 22674086 chr2L 22674147 22674163 4 74 2.0 0.0 1.0 2.0 91 chr2L 22674072 intron CG40006 - chr2L 22674118 intron CG40006 - chr2L 22674163 intron CG40006 - chr2L_4_22670001 chr2L_22670001 RAL-181 447 chr2L 22679805 22679830 chr2L 22684574 22684588 F-element 10 4770 3.5 6.5 5.0 1.7 4783 chr2L 22679805 intron CG40006 - chr2L 22682196 intron CG40006 - chr2L 22684588 intron CG40006 - chr2L_10_22680001 chr2L_22680001 RAL-181 448 chr2L 22983948 22983973 chr2L 22984017 22984049 8 70 3.5 3.5 3.5 1.8 101 chr2L 22983948 intron cta + chr2L 22983998 intron cta + chr2L 22984049 intron cta + chr2L_8_22980001 chr2L_22980001 RAL-181 449 chr2R 469962 469977 chr2R 473203 473213 F-element 4 3240 2.0 1.0 1.5 1.6 3251 chr2R 469962 intergenic not near genes chr2R 471588 intergenic not near genes chr2R 473213 intergenic not near genes chr2R_4_470001 chr2R_470001 RAL-181 450 chr2R 529331 529357 chr2R 537953 537982 Max-element 8 8622 1.0 4.0 2.5 2.3 8651 chr2R 529331 intron CG40378 + chr2R 533656 intron CG40378 + chr2R 537982 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-181 451 chr2R 552767 552787 chr2R 553969 553998 1360 10 1207 3.0 2.5 2.8 2.6 1231 chr2R 552767 intron CG40378 + chr2R 553382 intron CG40378 + chr2R 553998 intron CG40378 + chr2R_10_550001 chr2R_550001 RAL-181 452 chr2R 1082370 1082384 chr2R 1087127 1087160 Doc 11 4762 7.5 4.5 6.0 1.6 4790 chr2R 1082370 intron rl + chr2R 1084765 intron rl + chr2R 1087160 intron rl + chr2R_11_1080001 chr2R_1080001 RAL-181 453 chr2R 1365864 1365894 chr2R 1365976 1366006 11 107 3.0 2.0 2.5 3.1 142 chr2R 1365864 intron l(2)41Ab + chr2R 1365935 intron l(2)41Ab + chr2R 1366006 intron l(2)41Ab + chr2R_11_1365001 chr2R_1365001 RAL-181 454 chr2R 2015131 2015165 chr2R 2015207 2015242 8 76 1.5 1.5 1.5 3.2 111 chr2R 2015131 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015242 intron CG17684 - chr2R_8_2015001 chr2R_2015001 RAL-181 455 chr2R 2498984 2499018 chr2R 2508131 2508165 roo 12 9145 3.0 3.5 3.2 2.9 9181 chr2R 2498984 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508165 intron MFS17 - chr2R_12_2500001 chr2R_2500001 RAL-181 456 chr2R 2508309 2508337 chr2R 2508447 2508475 7 137 1.0 4.0 2.5 2.0 166 chr2R 2508309 intron MFS17 - chr2R 2508392 intron MFS17 - chr2R 2508475 intron MFS17 - chr2R_7_2505001 chr2R_2505001 RAL-181 457 chr2R 2529301 2529318 chr2R 2529374 2529381 4 72 2.0 5.0 3.5 0.9 80 chr2R 2529301 intron MFS17 - chr2R 2529341 intron MFS17 - chr2R 2529381 intron MFS17 - chr2R_4_2525001 chr2R_2525001 RAL-181 458 chr2R 3144091 3144109 chr2R 3393369 3393379 Doc 8 249275 18.5 7.0 12.8 0.6 249288 chr2R 3144091 intron CG42596 + chr2R 3268735 intergenic not near genes chr2R 3393379 intergenic not near genes chr2R_8_3265001 chr2R_3265001 RAL-181 459 chr2R 3291934 3292102 chr2R 3915102 3915263 7 623164 15.0 31.5 23.2 0.3 623329 chr2R 3291934 intergenic not near genes chr2R 3603598 intergenic not near genes chr2R 3915263 intron uex - chr2R_7_3600001 chr2R_3600001 RAL-181 460 chr2R 3293745 3293772 chr2R 3293823 3293835 7 75 3.0 2.5 2.8 1.8 90 chr2R 3293745 intergenic not near genes chr2R 3293790 intergenic not near genes chr2R 3293835 intergenic not near genes chr2R_7_3290001 chr2R_3290001 RAL-181 461 chr2R 3818931 3818945 chr2R 3819047 3819047 9 114 15.0 4.5 9.8 0.8 116 chr2R 3818931 intergenic not near genes chr2R 3818989 intergenic not near genes chr2R 3819047 intergenic not near genes chr2R_9_3815001 chr2R_3815001 RAL-181 462 chr2R 4312954 4312987 chr2R 4313038 4313071 8 82 4.5 6.5 5.5 1.2 117 chr2R 4312954 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-181 463 chr2R 4603344 4603373 chr2R 4603421 4603425 19 75 4.0 5.5 4.8 3.3 81 chr2R 4603344 intron p120ctn + chr2R 4603384 intron p120ctn + chr2R 4603425 intron p120ctn + chr2R_19_4600001 chr2R_4600001 RAL-181 464 chr2R 4621317 4621345 chr2R 4621857 4621885 13 537 4.5 5.5 5.0 2.2 568 chr2R 4621317 3` UTR CR44101 - chr2R 4621601 3` UTR CR44101 - chr2R 4621885 3` UTR CR44101 - chr2R_13_4620001 chr2R_4620001 RAL-181 465 chr2R 4622951 4622988 chr2R 4624110 4624130 1360 20 1157 5.5 4.0 4.8 3.4 1179 chr2R 4622951 intergenic CR44101 - chr2R 4623540 intergenic not near genes chr2R 4624130 intergenic not near genes chr2R_20_4620001 chr2R_4620001 RAL-181 466 chr2R 4624642 4624674 chr2R 4626547 4626579 Bica 12 1903 8.0 4.5 6.2 1.7 1937 chr2R 4624642 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626579 intergenic not near genes chr2R_12_4625001 chr2R_4625001 RAL-181 467 chr2R 4783252 4783268 chr2R 4783386 4783401 6 134 4.5 9.5 7.0 0.8 149 chr2R 4783252 intergenic not near genes chr2R 4783326 intergenic not near genes chr2R 4783401 intergenic not near genes chr2R_6_4780001 chr2R_4780001 RAL-181 468 chr2R 4838876 4838888 chr2R 4840399 4840405 transib2 6 1522 14.0 9.0 11.5 0.5 1529 chr2R 4838876 intergenic not near genes chr2R 4839640 intergenic not near genes chr2R 4840405 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-181 469 chr2R 5061558 5061561 chr2R 5600399 5600401 5 538843 10.0 5.0 7.5 0.6 538843 chr2R 5061558 intergenic not near genes chr2R 5330980 intergenic not near genes chr2R 5600401 intergenic not near genes chr2R_5_5330001 chr2R_5330001 RAL-181 470 chr2R 5079983 5079993 chr2R 5080588 5080616 diver2 6 618 0.5 4.5 2.5 1.7 633 chr2R 5079983 intergenic not near genes chr2R 5080300 intergenic not near genes chr2R 5080616 intergenic not near genes chr2R_6_5080001 chr2R_5080001 RAL-181 471 chr2R 5080794 5080804 chr2R 5080885 5080895 5 90 3.0 4.0 3.5 1.1 101 chr2R 5080794 intergenic not near genes chr2R 5080844 intergenic not near genes chr2R 5080895 intergenic not near genes chr2R_5_5080001 chr2R_5080001 RAL-181 472 chr2R 5080806 5080816 chr2R 5080884 5080907 4 86 1.0 3.5 2.2 1.2 101 chr2R 5080806 intergenic not near genes chr2R 5080856 intergenic not near genes chr2R 5080907 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-181 473 chr2R 5089624 5089648 chr2R 5089720 5089742 9 96 6.5 1.5 4.0 1.8 118 chr2R 5089624 intergenic not near genes chr2R 5089683 intergenic not near genes chr2R 5089742 intergenic not near genes chr2R_9_5085001 chr2R_5085001 RAL-181 474 chr2R 5240227 5240232 chr2R 5240297 5240307 4 73 12.5 7.5 10.0 0.4 80 chr2R 5240227 intron Nipped-A - chr2R 5240267 intron Nipped-A - chr2R 5240307 intron Nipped-A - chr2R_4_5240001 chr2R_5240001 RAL-181 475 chr2R 5455774 5455806 chr2R 5455852 5455872 15 76 7.5 5.0 6.2 2.1 98 chr2R 5455774 3` UTR laccase2 + chr2R 5455823 3` UTR laccase2 + chr2R 5455872 3` UTR laccase2 + chr2R_15_5455001 chr2R_5455001 RAL-181 476 chr2R 5463246 5463252 chr2R 5468715 5468723 4 5458 28.5 14.0 21.2 0.2 5477 chr2R 5463246 intergenic not near genes chr2R 5465984 intergenic not near genes chr2R 5468723 intron CG30440 - chr2R_4_5465001 chr2R_5465001 RAL-181 477 chr2R 5472366 5472392 chr2R 5472461 5472486 9 94 5.5 6.0 5.8 1.3 120 chr2R 5472366 intron CG30440 - chr2R 5472426 intron CG30440 - chr2R 5472486 intron CG30440 - chr2R_9_5470001 chr2R_5470001 RAL-181 478 chr2R 5491715 5491724 chr2R 5491854 5491865 4 140 9.0 6.0 7.5 0.5 150 chr2R 5491715 intron CG30440 - chr2R 5491790 intron CG30440 - chr2R 5491865 intron CG30440 - chr2R_4_5490001 chr2R_5490001 RAL-181 479 chr2R 5491726 5491748 chr2R 5491852 5491889 11 136 4.0 5.0 4.5 2.0 163 chr2R 5491726 intron CG30440 - chr2R 5491808 intron CG30440 - chr2R 5491889 intron CG30440 - chr2R_11_5490001 chr2R_5490001 RAL-181 480 chr2R 5509519 5509544 chr2R 5509615 5509634 6 95 3.0 3.0 3.0 1.5 115 chr2R 5509519 intron CG30438 + chr2R 5509576 intron CG30438 + chr2R 5509634 intron CG30438 + chr2R_6_5505001 chr2R_5505001 RAL-181 481 chr2R 5543202 5543223 chr2R 5547286 5547303 invader1 7 4081 0.0 4.0 2.0 2.3 4101 chr2R 5543202 intron CG30438 + chr2R 5545252 intron CG30438 + chr2R 5547303 intron CG30438 + chr2R_7_5545001 chr2R_5545001 RAL-181 482 chr2R 5581401 5581424 chr2R 5627610 5627633 11 46207 1.0 14.0 7.5 1.3 46232 chr2R 5581401 intergenic not near genes chr2R 5604517 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_11_5600001 chr2R_5600001 RAL-181 483 chr2R 5772528 5772547 chr2R 5772622 5772640 4 92 2.0 1.0 1.5 1.6 112 chr2R 5772528 3` UTR Gp210 + chr2R 5772584 3` UTR Gp210 + chr2R 5772640 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-181 484 chr2R 5859980 5860009 chr2R 5860087 5860107 13 109 5.5 5.5 5.5 2.0 127 chr2R 5859980 3` UTR dpr12 + chr2R 5860044 3` UTR dpr12 + chr2R 5860107 3` UTR dpr12 + chr2R_13_5860001 chr2R_5860001 RAL-181 485 chr2R 5861290 5861320 chr2R 5861409 5861427 11 118 3.0 3.0 3.0 2.8 137 chr2R 5861290 intergenic dpr12 + chr2R 5861358 intergenic not near genes chr2R 5861427 intergenic not near genes chr2R_11_5860001 chr2R_5860001 RAL-181 486 chr2R 5869280 5869309 chr2R 5874356 5874368 flea 16 5073 2.5 9.5 6.0 2.3 5088 chr2R 5869280 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874368 intergenic not near genes chr2R_16_5870001 chr2R_5870001 RAL-181 487 chr2R 5876866 5876905 chr2R 5876968 5877007 14 101 6.5 5.0 5.8 2.1 141 chr2R 5876866 intergenic not near genes chr2R 5876936 intergenic not near genes chr2R 5877007 intergenic not near genes chr2R_14_5875001 chr2R_5875001 RAL-181 488 chr2R 5878923 5878954 chr2R 5879006 5879023 5 80 0.5 3.5 2.0 1.7 100 chr2R 5878923 intergenic CG44438 - chr2R 5878973 intergenic CG44438 - chr2R 5879023 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-181 489 chr2R 5902178 5902185 chr2R 5909717 5909744 17.6 4 7552 1.0 1.0 1.0 2.0 7566 chr2R 5902178 intron CG43366 + chr2R 5905961 intron CG43366 + chr2R 5909744 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-181 490 chr2R 6016803 6016816 chr2R 6016887 6016899 5 82 2.0 1.5 1.8 1.8 96 chr2R 6016803 intergenic not near genes chr2R 6016851 intergenic not near genes chr2R 6016899 intergenic not near genes chr2R_5_6015001 chr2R_6015001 RAL-181 491 chr2R 6096725 6096750 chr2R 6101912 6101923 BS 10 5181 5.0 9.5 7.2 1.2 5198 chr2R 6096725 intron EcR - chr2R 6099324 intron EcR - chr2R 6101923 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-181 492 chr2R 6161318 6161332 chr2R 6161397 6161406 4 78 8.5 4.5 6.5 0.5 88 chr2R 6161318 intron EcR - chr2R 6161362 intron EcR - chr2R 6161406 intron EcR - chr2R_4_6160001 chr2R_6160001 RAL-181 493 chr2R 6168194 6168227 chr2R 6168276 6168309 7 81 1.5 2.0 1.8 2.5 115 chr2R 6168194 intron EcR - chr2R 6168252 intron EcR - chr2R 6168309 intron EcR - chr2R_7_6165001 chr2R_6165001 RAL-181 494 chr2R 6194688 6194690 chr2R 6194770 6194773 4 83 12.0 8.5 10.2 0.4 85 chr2R 6194688 intron Ptr - chr2R 6194730 intron Ptr - chr2R 6194773 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-181 495 chr2R 6494538 6494555 chr2R 6499287 6499315 F-element 8 4760 1.0 1.0 1.0 4.0 4777 chr2R 6494538 intergenic not near genes chr2R 6496926 intergenic not near genes chr2R 6499315 intergenic not near genes chr2R_8_6495001 chr2R_6495001 RAL-181 496 chr2R 6532907 6532940 chr2R 6533013 6533039 13 100 4.0 4.0 4.0 2.6 132 chr2R 6532907 intron,3` UTR jing +,CR43905 - chr2R 6532973 intron,3` UTR jing +,CR43905 - chr2R 6533039 intron,3` UTR jing +,CR43905 - chr2R_13_6530001 chr2R_6530001 RAL-181 497 chr2R 6633198 6633221 chr2R 6633275 6633298 9 76 5.5 4.5 5.0 1.5 100 chr2R 6633198 intergenic Vha16-1 -,Trap1 - chr2R 6633248 intergenic Vha16-1 -,Trap1 - chr2R 6633298 intergenic Vha16-1 -,Trap1 - chr2R_9_6630001 chr2R_6630001 RAL-181 498 chr2R 6664187 6664210 chr2R 6665988 6666011 S-element 4 1801 2.0 0.5 1.2 1.8 1824 chr2R 6664187 intron,3` UTR Adf1 +,CR45128 - chr2R 6665099 intron Adf1 + chr2R 6666011 intron Adf1 + chr2R_4_6665001 chr2R_6665001 RAL-181 499 chr2R 6825433 6825469 chr2R 6825526 6825562 13 91 3.5 1.5 2.5 3.7 129 chr2R 6825433 intergenic not near genes chr2R 6825498 intergenic not near genes chr2R 6825562 intergenic not near genes chr2R_13_6825001 chr2R_6825001 RAL-181 500 chr2R 6865687 6865714 chr2R 6865782 6865809 7 93 3.5 2.0 2.8 1.8 122 chr2R 6865687 intron coro - chr2R 6865748 intron coro - chr2R 6865809 intron coro - chr2R_7_6865001 chr2R_6865001 RAL-181 501 chr2R 6876231 6876251 chr2R 6876306 6876333 13 80 2.5 6.0 4.2 2.5 102 chr2R 6876231 intron,intron CR44169 +,Spn42Da - chr2R 6876282 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_13_6875001 chr2R_6875001 RAL-181 502 chr2R 7052038 7052046 chr2R 7052114 7052125 6 78 10.0 4.5 7.2 0.7 87 chr2R 7052038 intergenic lbm + chr2R 7052082 intergenic lbm + chr2R 7052125 intergenic lbm + chr2R_6_7050001 chr2R_7050001 RAL-181 503 chr2R 7052048 7052068 chr2R 7052113 7052131 14 75 6.0 4.5 5.2 2.3 83 chr2R 7052048 intergenic lbm + chr2R 7052090 intergenic lbm + chr2R 7052131 intergenic lbm + chr2R_14_7050001 chr2R_7050001 RAL-181 504 chr2R 7067594 7067624 chr2R 7067678 7067707 9 83 2.5 3.0 2.8 2.4 113 chr2R 7067594 intergenic not near genes chr2R 7067650 intergenic not near genes chr2R 7067707 intergenic not near genes chr2R_9_7065001 chr2R_7065001 RAL-181 505 chr2R 7101615 7101645 chr2R 7101708 7101740 8 94 4.0 4.0 4.0 1.6 125 chr2R 7101615 intron esn + chr2R 7101678 intron esn + chr2R 7101740 intron esn + chr2R_8_7100001 chr2R_7100001 RAL-181 506 chr2R 7235818 7235853 chr2R 7240910 7240936 jockey 21 5089 3.0 2.5 2.8 5.5 5118 chr2R 7235818 intergenic not near genes chr2R 7238377 intergenic not near genes chr2R 7240936 intergenic not near genes chr2R_21_7235001 chr2R_7235001 RAL-181 507 chr2R 7272268 7272288 chr2R 7272343 7272370 7 80 0.0 4.5 2.2 2.2 102 chr2R 7272268 intergenic Br140 - chr2R 7272319 3` UTR Br140 - chr2R 7272370 3` UTR Br140 - chr2R_7_7270001 chr2R_7270001 RAL-181 508 chr2R 7310763 7310796 chr2R 7310843 7310878 15 78 6.0 3.5 4.8 2.6 115 chr2R 7310763 intergenic not near genes chr2R 7310820 intergenic not near genes chr2R 7310878 intergenic not near genes chr2R_15_7310001 chr2R_7310001 RAL-181 509 chr2R 7371747 7371780 chr2R 7371851 7371884 10 102 2.5 3.0 2.8 2.6 137 chr2R 7371747 intron Dscam1 - chr2R 7371816 intron Dscam1 - chr2R 7371884 intron Dscam1 - chr2R_10_7370001 chr2R_7370001 RAL-181 510 chr2R 7418148 7418166 chr2R 7418227 7418245 5 79 2.0 3.0 2.5 1.4 97 chr2R 7418148 intergenic not near genes chr2R 7418196 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_5_7415001 chr2R_7415001 RAL-181 511 chr2R 7434893 7434921 chr2R 7439194 7439218 Juan 9 4299 7.0 5.0 6.0 1.3 4325 chr2R 7434893 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439218 intergenic not near genes chr2R_9_7435001 chr2R_7435001 RAL-181 512 chr2R 7608411 7608438 chr2R 7613612 7613632 I-element 12 5199 2.5 5.5 4.0 2.4 5221 chr2R 7608411 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613632 intron CG1358 - chr2R_12_7610001 chr2R_7610001 RAL-181 513 chr2R 7642871 7642873 chr2R 7642951 7642953 4 80 7.0 6.0 6.5 0.5 82 chr2R 7642871 intron CG43340 + chr2R 7642912 intron CG43340 + chr2R 7642953 intron CG43340 + chr2R_4_7640001 chr2R_7640001 RAL-181 514 chr2R 7642874 7642890 chr2R 7642948 7642965 11 76 2.0 5.0 3.5 2.4 91 chr2R 7642874 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642965 intron CG43340 + chr2R_11_7640001 chr2R_7640001 RAL-181 515 chr2R 7677428 7677459 chr2R 7677556 7677589 13 125 4.5 7.0 5.8 1.9 161 chr2R 7677428 3` UTR CG1399 - chr2R 7677508 3` UTR CG1399 - chr2R 7677589 3` UTR CG1399 - chr2R_13_7675001 chr2R_7675001 RAL-181 516 chr2R 7692012 7692033 chr2R 7692093 7692114 6 81 4.0 2.5 3.2 1.4 102 chr2R 7692012 intron CG1399 - chr2R 7692063 intron CG1399 - chr2R 7692114 intron CG1399 - chr2R_6_7690001 chr2R_7690001 RAL-181 517 chr2R 7760289 7760303 chr2R 7760422 7760429 8 133 2.5 8.5 5.5 1.2 140 chr2R 7760289 intron,intron CG30497 -,CG45093 - chr2R 7760359 intron,intron CG30497 -,CG45093 - chr2R 7760429 intron,intron CG30497 -,CG45093 - chr2R_8_7760001 chr2R_7760001 RAL-181 518 chr2R 7760304 7760306 chr2R 7760421 7760430 5 124 2.5 8.5 5.5 0.8 126 chr2R 7760304 intron,intron CG30497 -,CG45093 - chr2R 7760367 intron,intron CG30497 -,CG45093 - chr2R 7760430 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-181 519 chr2R 7769749 7769765 chr2R 7769820 7769841 5 72 2.0 1.5 1.8 1.8 92 chr2R 7769749 intron,intron CG30497 -,CG45093 - chr2R 7769795 intron,intron CG30497 -,CG45093 - chr2R 7769841 intron,intron CG30497 -,CG45093 - chr2R_5_7765001 chr2R_7765001 RAL-181 520 chr2R 7815681 7815702 chr2R 7822139 7822169 Burdock 11 6466 4.0 2.5 3.2 2.6 6488 chr2R 7815681 intergenic CG1882 + chr2R 7818925 intergenic not near genes chr2R 7822169 3` UTR cathD - chr2R_11_7815001 chr2R_7815001 RAL-181 521 chr2R 7869193 7869220 chr2R 7873979 7873982 Doc 8 4779 5.0 10.0 7.5 0.9 4789 chr2R 7869193 intron Dgk - chr2R 7871588 intron Dgk - chr2R 7873982 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-181 522 chr2R 7897139 7897155 chr2R 7897225 7897240 9 87 0.0 6.0 3.0 2.2 101 chr2R 7897139 intron CG30377 + chr2R 7897190 intron CG30377 + chr2R 7897240 intron CG30377 + chr2R_9_7895001 chr2R_7895001 RAL-181 523 chr2R 7920830 7920859 chr2R 7922403 7922432 16 1575 29.5 48.0 38.8 0.4 1602 chr2R 7920830 3` UTR Cul1 + chr2R 7921631 intron Or43b - chr2R 7922432 exon Or43b - chr2R_16_7920001 chr2R_7920001 RAL-181 524 chr2R 7926918 7926930 chr2R 7927004 7927017 4 85 1.5 1.5 1.5 1.6 99 chr2R 7926918 intron CG8791 + chr2R 7926968 intron CG8791 + chr2R 7927017 intron CG8791 + chr2R_4_7925001 chr2R_7925001 RAL-181 525 chr2R 7948662 7948672 chr2R 7949201 7949211 5 537 10.0 4.0 7.0 0.6 549 chr2R 7948662 intron CG14764 - chr2R 7948936 intron CG14764 - chr2R 7949211 intron CG14764 - chr2R_5_7945001 chr2R_7945001 RAL-181 526 chr2R 7948673 7948689 chr2R 7949197 7949228 6 534 4.0 2.5 3.2 1.4 555 chr2R 7948673 intron CG14764 - chr2R 7948950 intron CG14764 - chr2R 7949228 intron CG14764 - chr2R_6_7945001 chr2R_7945001 RAL-181 527 chr2R 8015664 8015674 chr2R 8017687 8017697 4 2023 4.0 9.0 6.5 0.5 2033 chr2R 8015664 intergenic mir-4981 + chr2R 8016680 intergenic not near genes chr2R 8017697 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-181 528 chr2R 8015679 8015684 chr2R 8017685 8017707 6 2017 1.5 9.0 5.2 1.0 2028 chr2R 8015679 intergenic mir-4981 + chr2R 8016693 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_6_8015001 chr2R_8015001 RAL-181 529 chr2R 8157902 8157906 chr2R 8157988 8157990 4 86 7.5 4.5 6.0 0.6 88 chr2R 8157902 5` UTR CR44068 + chr2R 8157946 5` UTR CR44068 + chr2R 8157990 5` UTR CR44068 + chr2R_4_8155001 chr2R_8155001 RAL-181 530 chr2R 8160936 8160953 chr2R 8161026 8161043 1360 7 90 7.0 18.5 12.8 0.5 107 chr2R 8160936 intron CG8708 - chr2R 8160990 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_7_8160001 chr2R_8160001 RAL-181 531 chr2R 8236040 8236063 chr2R 8236121 8236142 6 79 1.0 1.0 1.0 3.0 102 chr2R 8236040 intergenic not near genes chr2R 8236091 intergenic not near genes chr2R 8236142 intergenic not near genes chr2R_6_8235001 chr2R_8235001 RAL-181 532 chr2R 8249561 8249593 chr2R 8249643 8249675 6 82 4.5 0.5 2.5 1.7 114 chr2R 8249561 5` UTR CG44439 - chr2R 8249618 intergenic CG44439 - chr2R 8249675 intergenic CG44439 - chr2R_6_8245001 chr2R_8245001 RAL-181 533 chr2R 8260796 8260798 chr2R 8260868 8260878 4 76 5.5 6.5 6.0 0.6 82 chr2R 8260796 3` UTR CG2291 - chr2R 8260837 3` UTR CG2291 - chr2R 8260878 exon CG2291 - chr2R_4_8260001 chr2R_8260001 RAL-181 534 chr2R 8297428 8297455 chr2R 8297507 8297534 13 76 4.0 2.0 3.0 3.2 106 chr2R 8297428 intergenic not near genes chr2R 8297481 intergenic not near genes chr2R 8297534 intergenic not near genes chr2R_13_8295001 chr2R_8295001 RAL-181 535 chr2R 8298587 8298600 chr2R 8298679 8298687 5 90 1.5 11.5 6.5 0.7 100 chr2R 8298587 intergenic mir-280 + chr2R 8298637 intergenic mir-280 + chr2R 8298687 intergenic mir-280 + chr2R_5_8295001 chr2R_8295001 RAL-181 536 chr2R 8330860 8330895 chr2R 8331346 8331372 roo 8 483 5.5 4.0 4.8 1.4 512 chr2R 8330860 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331372 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-181 537 chr2R 8339214 8339218 chr2R 8339296 8339312 4 88 5.5 8.0 6.8 0.5 98 chr2R 8339214 intron pdm3 + chr2R 8339263 intron pdm3 + chr2R 8339312 intron pdm3 + chr2R_4_8335001 chr2R_8335001 RAL-181 538 chr2R 8398224 8398244 chr2R 8403005 8403016 Doc 7 4778 8.0 7.5 7.8 0.8 4792 chr2R 8398224 intron CG2121 - chr2R 8400620 intron CG2121 - chr2R 8403016 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-181 539 chr2R 8406079 8406104 chr2R 8406155 8406181 7 76 2.0 7.0 4.5 1.3 102 chr2R 8406079 intron CG2121 - chr2R 8406130 intron CG2121 - chr2R 8406181 intron CG2121 - chr2R_7_8405001 chr2R_8405001 RAL-181 540 chr2R 8454933 8454964 chr2R 8455876 8455908 17 946 46.0 28.5 37.2 0.4 975 chr2R 8454933 exon Mal-A2 + chr2R 8455420 exon Mal-A2 + chr2R 8455908 3` UTR Mal-A3 - chr2R_17_8455001 chr2R_8455001 RAL-181 541 chr2R 8501440 8501456 chr2R 8501846 8501860 7 405 8.0 6.0 7.0 0.9 420 chr2R 8501440 intron mtt - chr2R 8501650 intron mtt - chr2R 8501860 intron mtt - chr2R_7_8500001 chr2R_8500001 RAL-181 542 chr2R 8501461 8501470 chr2R 8501842 8501842 7 397 2.5 5.5 4.0 1.4 381 chr2R 8501461 intron mtt - chr2R 8501652 intron mtt - chr2R 8501842 intron mtt - chr2R_7_8500001 chr2R_8500001 RAL-181 543 chr2R 8518100 8518134 chr2R 8518184 8518218 15 80 3.5 6.5 5.0 2.5 118 chr2R 8518100 intron mtt - chr2R 8518159 intron mtt - chr2R 8518218 intron mtt - chr2R_15_8515001 chr2R_8515001 RAL-181 544 chr2R 8637263 8637290 chr2R 8637819 8637826 13 551 2.0 7.5 4.8 2.2 563 chr2R 8637263 intergenic not near genes chr2R 8637544 intergenic not near genes chr2R 8637826 intergenic not near genes chr2R_13_8635001 chr2R_8635001 RAL-181 545 chr2R 8658256 8658260 chr2R 8658307 8658336 4 69 1.5 3.5 2.5 1.1 80 chr2R 8658256 intron ptc + chr2R 8658296 intron ptc + chr2R 8658336 intron ptc + chr2R_4_8655001 chr2R_8655001 RAL-181 546 chr2R 8722762 8722793 chr2R 8723003 8723033 pogo 19 238 5.0 5.5 5.2 3.1 271 chr2R 8722762 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723033 intron CG14767 - chr2R_19_8720001 chr2R_8720001 RAL-181 547 chr2R 8784888 8784907 chr2R 8785349 8785374 5 461 6.0 3.5 4.8 0.9 486 chr2R 8784888 intergenic not near genes chr2R 8785131 intergenic not near genes chr2R 8785374 intergenic not near genes chr2R_5_8785001 chr2R_8785001 RAL-181 548 chr2R 8833425 8833452 chr2R 8833507 8833533 19 81 3.5 4.0 3.8 4.0 108 chr2R 8833425 intron sns + chr2R 8833479 intron sns + chr2R 8833533 intron sns + chr2R_19_8830001 chr2R_8830001 RAL-181 549 chr2R 8882128 8882153 chr2R 8882237 8882262 16 106 7.0 3.5 5.2 2.6 134 chr2R 8882128 intron RyR + chr2R 8882195 intron RyR + chr2R 8882262 intron RyR + chr2R_16_8880001 chr2R_8880001 RAL-181 550 chr2R 8967430 8967687 chr2R 8967577 8967804 7 140 7.5 3.5 5.5 1.1 374 chr2R 8967430 intron CG8216 - chr2R 8967617 intron CG8216 - chr2R 8967804 intron CG8216 - chr2R_7_8965001 chr2R_8965001 RAL-181 551 chr2R 8995942 8995964 chr2R 8996026 8996051 8 84 2.5 3.0 2.8 2.1 109 chr2R 8995942 exon Np - chr2R 8995996 intron Np - chr2R 8996051 intron Np - chr2R_8_8995001 chr2R_8995001 RAL-181 552 chr2R 9031992 9032012 chr2R 9032054 9032089 12 72 4.5 5.0 4.8 2.1 97 chr2R 9031992 intergenic not near genes chr2R 9032040 intergenic not near genes chr2R 9032089 intergenic not near genes chr2R_12_9030001 chr2R_9030001 RAL-181 553 chr2R 9052709 9052741 chr2R 9052789 9052804 24 77 0.0 7.0 3.5 5.3 95 chr2R 9052709 intron CG13743 - chr2R 9052756 intron CG13743 - chr2R 9052804 intron CG13743 - chr2R_24_9050001 chr2R_9050001 RAL-181 554 chr2R 9055441 9055449 chr2R 9055568 9055576 5 127 7.0 5.5 6.2 0.7 135 chr2R 9055441 intron CG13743 - chr2R 9055508 intron CG13743 - chr2R 9055576 intron CG13743 - chr2R_5_9055001 chr2R_9055001 RAL-181 555 chr2R 9055453 9055463 chr2R 9055562 9055585 14 122 4.0 4.5 4.2 2.7 132 chr2R 9055453 intron CG13743 - chr2R 9055519 intron CG13743 - chr2R 9055585 intron CG13743 - chr2R_14_9055001 chr2R_9055001 RAL-181 556 chr2R 9212693 9212715 chr2R 9213179 9213201 roo 10 483 5.5 8.5 7.0 1.2 508 chr2R 9212693 intergenic CR45309 + chr2R 9212947 intergenic CR45309 + chr2R 9213201 5` UTR CR45309 + chr2R_10_9210001 chr2R_9210001 RAL-181 557 chr2R 9368128 9368153 chr2R 9368204 9368229 11 74 3.5 1.0 2.2 3.4 101 chr2R 9368128 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_11_9365001 chr2R_9365001 RAL-181 558 chr2R 9388653 9388671 chr2R 9388739 9388757 7 85 8.0 2.5 5.2 1.1 104 chr2R 9388653 5` UTR CG13954 - chr2R 9388705 5` UTR CG13954 - chr2R 9388757 5` UTR CG13954 - chr2R_7_9385001 chr2R_9385001 RAL-181 559 chr2R 9401620 9401656 chr2R 9401707 9401726 8 84 1.0 4.0 2.5 2.3 106 chr2R 9401620 intron wun - chr2R 9401673 intron wun - chr2R 9401726 intron wun - chr2R_8_9400001 chr2R_9400001 RAL-181 560 chr2R 9408234 9408250 chr2R 9408312 9408331 4 81 4.5 5.0 4.8 0.7 97 chr2R 9408234 intron wun - chr2R 9408282 intron wun - chr2R 9408331 intron wun - chr2R_4_9405001 chr2R_9405001 RAL-181 561 chr2R 9415866 9415887 chr2R 9415952 9415973 6 86 4.0 3.5 3.8 1.2 107 chr2R 9415866 intron wun2 + chr2R 9415920 intron wun2 + chr2R 9415973 intron wun2 + chr2R_6_9415001 chr2R_9415001 RAL-181 562 chr2R 9510667 9510698 chr2R 9510783 9510811 10 113 3.5 3.0 3.2 2.4 144 chr2R 9510667 intron brp + chr2R 9510739 intron brp + chr2R 9510811 intron brp + chr2R_10_9510001 chr2R_9510001 RAL-181 563 chr2R 9561827 9561841 chr2R 9561915 9561929 6 87 1.5 4.0 2.8 1.6 102 chr2R 9561827 3` UTR,intron CR45281 -,CG1809 + chr2R 9561878 3` UTR,intron CR45281 -,CG1809 + chr2R 9561929 3` UTR,intron CR45281 -,CG1809 + chr2R_6_9560001 chr2R_9560001 RAL-181 564 chr2R 9726617 9726646 chr2R 9734168 9734196 17.6 5 7550 0.5 1.5 1.0 2.5 7579 chr2R 9726617 intron sqa - chr2R 9730406 intron sqa - chr2R 9734196 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-181 565 chr2R 9782449 9782465 chr2R 9782538 9782554 4 89 5.0 3.5 4.2 0.8 105 chr2R 9782449 intron CG1688 - chr2R 9782502 intron CG1688 - chr2R 9782554 intron CG1688 - chr2R_4_9780001 chr2R_9780001 RAL-181 566 chr2R 9859195 9859209 chr2R 9861545 9861576 12 2353 39.0 27.0 33.0 0.4 2381 chr2R 9859195 intron CG1516 - chr2R 9860386 intron CG1516 - chr2R 9861576 intergenic CR44293 +,CG1516 - chr2R_12_9860001 chr2R_9860001 RAL-181 567 chr2R 9871043 9871072 chr2R 9871528 9871555 roo 10 485 2.5 8.0 5.2 1.6 512 chr2R 9871043 intron cbx - chr2R 9871299 intron cbx - chr2R 9871555 intron,5` UTR cbx -,CG18446 + chr2R_10_9870001 chr2R_9870001 RAL-181 568 chr2R 9940753 9940772 chr2R 9940835 9940851 6 80 3.5 4.0 3.8 1.2 98 chr2R 9940753 5` UTR Mef2 - chr2R 9940802 5` UTR Mef2 - chr2R 9940851 5` UTR Mef2 - chr2R_6_9940001 chr2R_9940001 RAL-181 569 chr2R 9945434 9945465 chr2R 9945630 9945661 BS 16 192 9.0 5.0 7.0 2.0 227 chr2R 9945434 intron Mef2 - chr2R 9945548 intron Mef2 - chr2R 9945661 intron Mef2 - chr2R_16_9945001 chr2R_9945001 RAL-181 570 chr2R 9975917 9975950 chr2R 9976031 9976050 19 112 8.0 3.0 5.5 2.9 133 chr2R 9975917 intergenic not near genes chr2R 9975984 intergenic not near genes chr2R 9976050 intergenic not near genes chr2R_19_9975001 chr2R_9975001 RAL-181 571 chr2R 10005847 10005881 chr2R 10007012 10007038 1360 17 1161 8.0 7.5 7.8 1.9 1191 chr2R 10005847 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007038 intron Pka-R2 - chr2R_17_10005001 chr2R_10005001 RAL-181 572 chr2R 10017651 10017681 chr2R 10017725 10017747 12 76 2.5 4.5 3.5 2.7 96 chr2R 10017651 intron Pka-R2 - chr2R 10017699 intron Pka-R2 - chr2R 10017747 intron Pka-R2 - chr2R_12_10015001 chr2R_10015001 RAL-181 573 chr2R 10088683 10088703 chr2R 10088835 10088855 6 151 3.5 1.5 2.5 1.7 172 chr2R 10088683 intron CG2269 + chr2R 10088769 intron CG2269 + chr2R 10088855 intron CG2269 + chr2R_6_10085001 chr2R_10085001 RAL-181 574 chr2R 10122741 10122751 chr2R 10122950 10122961 7 209 3.5 1.0 2.2 2.2 220 chr2R 10122741 intergenic Ccs - chr2R 10122851 intergenic Ccs - chr2R 10122961 intergenic Ccs - chr2R_7_10120001 chr2R_10120001 RAL-181 575 chr2R 10129695 10129716 chr2R 10130082 10130115 11 395 3.5 1.0 2.2 3.4 420 chr2R 10129695 intron gem + chr2R 10129905 intron gem + chr2R 10130115 intron gem + chr2R_11_10125001 chr2R_10125001 RAL-181 576 chr2R 10190443 10190470 chr2R 10190527 10190541 5 80 2.0 7.5 4.8 0.9 98 chr2R 10190443 intron KCNQ - chr2R 10190492 intron KCNQ - chr2R 10190541 intron KCNQ - chr2R_5_10190001 chr2R_10190001 RAL-181 577 chr2R 10216192 10216224 chr2R 10216270 10216302 18 77 4.0 5.0 4.5 3.3 110 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216247 intron,intron CG12912 -,Hr46 - chr2R 10216302 intron,intron CG12912 -,Hr46 - chr2R_18_10215001 chr2R_10215001 RAL-181 578 chr2R 10225733 10225748 chr2R 10225815 10225830 5 82 4.0 1.0 2.5 1.4 97 chr2R 10225733 intron,intron CG12912 -,Hr46 - chr2R 10225782 intron,intron CG12912 -,Hr46 - chr2R 10225830 intron,intron CG12912 -,Hr46 - chr2R_5_10225001 chr2R_10225001 RAL-181 579 chr2R 10313316 10313354 chr2R 10313404 10313442 7 88 2.0 4.5 3.2 1.7 126 chr2R 10313316 intergenic not near genes chr2R 10313379 intergenic not near genes chr2R 10313442 intergenic Ndg + chr2R_7_10310001 chr2R_10310001 RAL-181 580 chr2R 10352672 10352705 chr2R 10352749 10352782 19 75 5.0 3.0 4.0 3.8 110 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352727 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352782 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_19_10350001 chr2R_10350001 RAL-181 581 chr2R 10366254 10366265 chr2R 10374744 10374755 4 8490 20.5 3.5 12.0 0.3 8501 chr2R 10366254 intron CG42732 - chr2R 10370504 intron CG42732 - chr2R 10374755 intron CG42732 - chr2R_4_10370001 chr2R_10370001 RAL-181 582 chr2R 10387983 10388001 chr2R 10388080 10388094 8 96 0.0 8.5 4.2 1.5 111 chr2R 10387983 intron CG42732 - chr2R 10388038 intron CG42732 - chr2R 10388094 intron CG42732 - chr2R_8_10385001 chr2R_10385001 RAL-181 583 chr2R 10411809 10411836 chr2R 10411887 10411907 5 75 2.5 1.5 2.0 1.7 98 chr2R 10411809 intron CG42732 - chr2R 10411858 intron CG42732 - chr2R 10411907 intron CG42732 - chr2R_5_10410001 chr2R_10410001 RAL-181 584 chr2R 10429018 10429047 chr2R 10429095 10429107 15 72 3.0 2.5 2.8 3.9 89 chr2R 10429018 intergenic not near genes chr2R 10429062 intergenic not near genes chr2R 10429107 intergenic not near genes chr2R_15_10425001 chr2R_10425001 RAL-181 585 chr2R 10454095 10454129 chr2R 10454172 10454206 21 74 7.0 7.0 7.0 2.6 111 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_21_10450001 chr2R_10450001 RAL-181 586 chr2R 10469021 10469055 chr2R 10469146 10469181 23 125 3.0 7.0 5.0 3.8 160 chr2R 10469021 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_23_10465001 chr2R_10465001 RAL-181 587 chr2R 10476464 10476500 chr2R 10476544 10476562 19 77 3.5 5.5 4.5 3.5 98 chr2R 10476464 intron whd - chr2R 10476513 intron whd - chr2R 10476562 intron whd - chr2R_19_10475001 chr2R_10475001 RAL-181 588 chr2R 10574627 10574647 chr2R 10574709 10574729 4 82 4.5 2.5 3.5 0.9 102 chr2R 10574627 intron psq + chr2R 10574678 intron psq + chr2R 10574729 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-181 589 chr2R 10585575 10585589 chr2R 10594145 10594172 Tirant 14 8581 4.5 5.0 4.8 2.4 8597 chr2R 10585575 intron psq + chr2R 10589874 intron psq + chr2R 10594172 intron psq + chr2R_14_10585001 chr2R_10585001 RAL-181 590 chr2R 10644058 10644090 chr2R 10644136 10644154 7 74 3.5 2.0 2.8 1.8 96 chr2R 10644058 intron Git - chr2R 10644106 intron Git - chr2R 10644154 intron Git - chr2R_7_10640001 chr2R_10640001 RAL-181 591 chr2R 10761557 10761587 chr2R 10761711 10761741 15 151 2.0 1.5 1.8 5.4 184 chr2R 10761557 intron,5` UTR CG33144 -,CR43605 + chr2R 10761649 intron,5` UTR CG33144 -,CR43605 + chr2R 10761741 intron CG33144 - chr2R_15_10760001 chr2R_10760001 RAL-181 592 chr2R 10771003 10771021 chr2R 10771081 10771096 5 79 7.0 2.0 4.5 0.9 93 chr2R 10771003 intron CG33144 - chr2R 10771050 intron CG33144 - chr2R 10771096 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-181 593 chr2R 10834084 10834117 chr2R 10834177 10834198 17 89 2.5 1.5 2.0 5.7 114 chr2R 10834084 intron CG12344 - chr2R 10834141 intron CG12344 - chr2R 10834198 intron CG12344 - chr2R_17_10830001 chr2R_10830001 RAL-181 594 chr2R 10931039 10931068 chr2R 10931118 10931149 12 80 3.0 4.0 3.5 2.7 110 chr2R 10931039 intergenic not near genes chr2R 10931094 intergenic not near genes chr2R 10931149 intergenic not near genes chr2R_12_10930001 chr2R_10930001 RAL-181 595 chr2R 10940490 10940510 chr2R 10940600 10940623 12 112 0.5 1.0 0.8 6.7 133 chr2R 10940490 intron Spn47C - chr2R 10940556 exon Spn47C - chr2R 10940623 exon Spn47C - chr2R_12_10940001 chr2R_10940001 RAL-181 596 chr2R 10948026 10948040 chr2R 10955577 10955589 17.6 8 7550 1.0 8.0 4.5 1.5 7563 chr2R 10948026 intergenic not near genes chr2R 10951808 intergenic not near genes chr2R 10955589 intergenic not near genes chr2R_8_10950001 chr2R_10950001 RAL-181 597 chr2R 10948041 10948062 chr2R 10955576 10955613 17.6 11 7546 0.5 6.5 3.5 2.4 7572 chr2R 10948041 intergenic not near genes chr2R 10951827 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_11_10950001 chr2R_10950001 RAL-181 598 chr2R 10980519 10980548 chr2R 10980597 10980626 21 75 4.0 5.5 4.8 3.6 107 chr2R 10980519 intergenic not near genes chr2R 10980572 intergenic not near genes chr2R 10980626 intergenic not near genes chr2R_21_10980001 chr2R_10980001 RAL-181 599 chr2R 11003635 11003662 chr2R 11003771 11003793 17 134 1.0 0.0 0.5 11.3 158 chr2R 11003635 intron luna - chr2R 11003714 intron luna - chr2R 11003793 intron luna - chr2R_17_11000001 chr2R_11000001 RAL-181 600 chr2R 11009812 11009848 chr2R 11018986 11019021 roo 15 9171 2.5 3.0 2.8 3.9 9209 chr2R 11009812 intron luna - chr2R 11014416 intron luna - chr2R 11019021 intron luna - chr2R_15_11010001 chr2R_11010001 RAL-181 601 chr2R 11019884 11019898 chr2R 11024950 11024958 jockey 8 5065 10.0 4.0 7.0 1.0 5074 chr2R 11019884 intron luna - chr2R 11022421 intron luna - chr2R 11024958 intron luna - chr2R_8_11020001 chr2R_11020001 RAL-181 602 chr2R 11019905 11019912 chr2R 11024947 11024975 jockey 4 5059 4.5 4.0 4.2 0.8 5070 chr2R 11019905 intron luna - chr2R 11022440 intron luna - chr2R 11024975 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-181 603 chr2R 11040332 11040357 chr2R 11041087 11041109 9 747 16.5 42.0 29.2 0.3 777 chr2R 11040332 intron luna - chr2R 11040720 intron luna - chr2R 11041109 intron luna - chr2R_9_11040001 chr2R_11040001 RAL-181 604 chr2R 11071560 11071589 chr2R 11071665 11071694 11 105 6.0 2.5 4.2 2.1 134 chr2R 11071560 intron luna - chr2R 11071627 intron luna - chr2R 11071694 intron luna - chr2R_11_11070001 chr2R_11070001 RAL-181 605 chr2R 11111154 11111180 chr2R 11111291 11111316 13 136 3.5 3.5 3.5 2.9 162 chr2R 11111154 intron luna - chr2R 11111235 intron luna - chr2R 11111316 intron luna - chr2R_13_11110001 chr2R_11110001 RAL-181 606 chr2R 11207814 11207846 chr2R 11208006 11208034 BS 14 192 5.0 3.0 4.0 2.8 220 chr2R 11207814 intron shn + chr2R 11207924 intron shn + chr2R 11208034 intron shn + chr2R_14_11205001 chr2R_11205001 RAL-181 607 chr2R 11235421 11235427 chr2R 11235732 11235748 8 316 7.0 4.0 5.5 1.2 327 chr2R 11235421 exon CG13227 + chr2R 11235584 exon CG13227 + chr2R 11235748 3` UTR CG13227 + chr2R_8_11235001 chr2R_11235001 RAL-181 608 chr2R 11249179 11249201 chr2R 11249300 11249309 5 121 3.0 0.5 1.8 1.8 130 chr2R 11249179 intergenic CG43112 + chr2R 11249244 intergenic CG43112 + chr2R 11249309 intergenic CG43112 + chr2R_5_11245001 chr2R_11245001 RAL-181 609 chr2R 11276804 11276816 chr2R 11276972 11276981 5 167 3.0 3.5 3.2 1.2 177 chr2R 11276804 intergenic not near genes chr2R 11276892 intergenic not near genes chr2R 11276981 intergenic not near genes chr2R_5_11275001 chr2R_11275001 RAL-181 610 chr2R 11292967 11292996 chr2R 11293046 11293060 17 76 4.5 0.5 2.5 4.9 93 chr2R 11292967 exon,3` UTR dare -,CG30033 + chr2R 11293014 exon,3` UTR dare -,CG30033 + chr2R 11293060 5` UTR,3` UTR dare -,CG30033 + chr2R_17_11290001 chr2R_11290001 RAL-181 611 chr2R 11297623 11297647 chr2R 11301938 11301966 flea 8 4314 8.5 5.5 7.0 1.0 4343 chr2R 11297623 intergenic CG42336 - chr2R 11299794 intergenic not near genes chr2R 11301966 5` UTR CG7741 + chr2R_8_11295001 chr2R_11295001 RAL-181 612 chr2R 11344151 11344181 chr2R 11344241 11344273 5 90 0.0 3.0 1.5 2.0 122 chr2R 11344151 intergenic alphaTry - chr2R 11344212 intergenic alphaTry - chr2R 11344273 3` UTR alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-181 613 chr2R 11415533 11415543 chr2R 11418673 11418692 opus 4 3147 6.0 9.0 7.5 0.5 3159 chr2R 11415533 intron Drip - chr2R 11417112 intron Drip - chr2R 11418692 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-181 614 chr2R 11419885 11419897 chr2R 11420003 11420027 10 126 3.5 5.0 4.2 1.9 142 chr2R 11419885 intron Drip - chr2R 11419956 intron Drip - chr2R 11420027 intron Drip - chr2R_10_11415001 chr2R_11415001 RAL-181 615 chr2R 11438611 11438629 chr2R 11438688 11438706 9 76 2.5 3.5 3.0 2.2 95 chr2R 11438611 intron CG7777 + chr2R 11438658 intron CG7777 + chr2R 11438706 intron CG7777 + chr2R_9_11435001 chr2R_11435001 RAL-181 616 chr2R 11472648 11472680 chr2R 11473845 11473877 pogo 18 1195 6.0 4.0 5.0 3.0 1229 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_18_11470001 chr2R_11470001 RAL-181 617 chr2R 11487879 11487887 chr2R 11488195 11488201 4 316 4.0 4.0 4.0 0.8 322 chr2R 11487879 intron inv + chr2R 11488040 intron inv + chr2R 11488201 intron inv + chr2R_4_11485001 chr2R_11485001 RAL-181 618 chr2R 11487888 11487906 chr2R 11488193 11488221 6 314 2.0 3.5 2.8 1.6 333 chr2R 11487888 intron inv + chr2R 11488054 intron inv + chr2R 11488221 intron inv + chr2R_6_11485001 chr2R_11485001 RAL-181 619 chr2R 11605295 11605310 chr2R 11605463 11605478 5 167 3.5 7.0 5.2 0.8 183 chr2R 11605295 intron tou - chr2R 11605386 intron tou - chr2R 11605478 intron tou - chr2R_5_11605001 chr2R_11605001 RAL-181 620 chr2R 11614622 11614800 chr2R 11614710 11614888 5 88 1.0 2.0 1.5 2.0 266 chr2R 11614622 intron tou - chr2R 11614755 intron tou - chr2R 11614888 intron tou - chr2R_5_11610001 chr2R_11610001 RAL-181 621 chr2R 11681496 11681533 chr2R 11683989 11684012 15 2490 13.0 27.5 20.2 0.7 2516 chr2R 11681496 intron Buffy + chr2R 11682754 intron Buffy + chr2R 11684012 intron Buffy + chr2R_15_11680001 chr2R_11680001 RAL-181 622 chr2R 11681516 11681539 chr2R 11684512 11684527 7 2990 11.0 9.5 10.2 0.6 3011 chr2R 11681516 intron Buffy + chr2R 11683022 intron Buffy + chr2R 11684527 intron,exon Buffy +,CG13196 - chr2R_7_11680001 chr2R_11680001 RAL-181 623 chr2R 11709423 11709456 chr2R 11709512 11709546 14 89 6.0 3.5 4.8 2.4 123 chr2R 11709423 intergenic not near genes chr2R 11709484 intergenic not near genes chr2R 11709546 intergenic not near genes chr2R_14_11705001 chr2R_11705001 RAL-181 624 chr2R 12013541 12013556 chr2R 12013627 12013642 7 85 0.0 7.5 3.8 1.5 101 chr2R 12013541 intron otk - chr2R 12013592 intron otk - chr2R 12013642 intron otk - chr2R_7_12010001 chr2R_12010001 RAL-181 625 chr2R 8518779 8518797 chr2R 12066191 12066205 8 3547401 13.0 15.5 14.2 0.5 3547426 chr2R 8518779 intron mtt - chr2R 10292492 intron CAP + chr2R 12066205 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-181 626 chr2R 12096836 12096855 chr2R 12097287 12097298 9 450 3.5 4.5 4.0 1.8 462 chr2R 12096836 intron jeb - chr2R 12097067 intron jeb - chr2R 12097298 intron jeb - chr2R_9_12095001 chr2R_12095001 RAL-181 627 chr2R 12187471 12187505 chr2R 12190087 12190124 73 2621 194.0 145.0 169.5 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_73_12185001 chr2R_12185001 RAL-181 628 chr2R 12272335 12272338 chr2R 12272414 12272421 4 81 3.0 5.0 4.0 0.8 86 chr2R 12272335 intron Cam + chr2R 12272378 intron Cam + chr2R 12272421 intron Cam + chr2R_4_12270001 chr2R_12270001 RAL-181 629 chr2R 12363383 12363417 chr2R 12363814 12363849 18 430 4.5 8.0 6.2 2.5 466 chr2R 12363383 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_18_12360001 chr2R_12360001 RAL-181 630 chr2R 12386153 12386180 chr2R 12386234 12386260 6 78 3.0 2.0 2.5 1.7 107 chr2R 12386153 intergenic not near genes chr2R 12386206 intergenic Cpr49Ac + chr2R 12386260 intergenic Cpr49Ac + chr2R_6_12385001 chr2R_12385001 RAL-181 631 chr2R 12481150 12481152 chr2R 12482950 12482952 roo 4 1802 3.0 7.5 5.2 0.6 1802 chr2R 12481150 exon Dh44-R2 + chr2R 12482051 intron Dh44-R2 + chr2R 12482952 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-181 632 chr2R 12492097 12492124 chr2R 12492183 12492216 12 86 6.0 0.0 3.0 3.0 119 chr2R 12492097 intron fdl - chr2R 12492156 intron fdl - chr2R 12492216 intron fdl - chr2R_12_12490001 chr2R_12490001 RAL-181 633 chr2R 12501690 12501721 chr2R 12503851 12503879 Rt1c 5 2160 6.5 5.0 5.8 0.7 2189 chr2R 12501690 intron fdl - chr2R 12502784 intron fdl - chr2R 12503879 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-181 634 chr2R 12504149 12504175 chr2R 12504222 12504248 9 71 5.5 4.0 4.8 1.6 99 chr2R 12504149 intron fdl - chr2R 12504198 intron fdl - chr2R 12504248 intron fdl - chr2R_9_12500001 chr2R_12500001 RAL-181 635 chr2R 12527277 12527305 chr2R 12527486 12527514 14 208 2.0 7.0 4.5 2.5 237 chr2R 12527277 intergenic not near genes chr2R 12527396 intergenic not near genes chr2R 12527514 intergenic not near genes chr2R_14_12525001 chr2R_12525001 RAL-181 636 chr2R 12540479 12540496 chr2R 12540562 12540569 5 81 10.0 3.5 6.8 0.6 90 chr2R 12540479 intron fra + chr2R 12540524 intron fra + chr2R 12540569 intron fra + chr2R_5_12540001 chr2R_12540001 RAL-181 637 chr2R 12548547 12548554 chr2R 12548618 12548631 5 76 0.5 16.0 8.2 0.5 84 chr2R 12548547 intron fra + chr2R 12548589 intron fra + chr2R 12548631 intron fra + chr2R_5_12545001 chr2R_12545001 RAL-181 638 chr2R 12565568 12565591 chr2R 12565938 12565952 9 368 2.0 2.5 2.2 2.8 384 chr2R 12565568 intergenic not near genes chr2R 12565760 intergenic Cyp301a1 + chr2R 12565952 intergenic Cyp301a1 + chr2R_9_12565001 chr2R_12565001 RAL-181 639 chr2R 12602828 12602836 chr2R 12602907 12602920 4 83 0.0 7.5 3.8 0.8 92 chr2R 12602828 intron Amph + chr2R 12602874 intron Amph + chr2R 12602920 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-181 640 chr2R 12627492 12627497 chr2R 12627577 12627590 5 90 0.0 9.0 4.5 0.9 98 chr2R 12627492 intron CG17760 + chr2R 12627541 intron CG17760 + chr2R 12627590 intron CG17760 + chr2R_5_12625001 chr2R_12625001 RAL-181 641 chr2R 12664505 12664517 chr2R 22524386 22524387 4 9859878 7.0 4.5 5.8 0.6 9859882 chr2R 12664505 intron nemy - chr2R 17594446 intron lack + chr2R 22524387 intron px - chr2R_4_17590001 chr2R_17590001 RAL-181 642 chr2R 12789298 12789327 chr2R 12797658 12797672 roo 14 8359 3.0 5.0 4.0 2.8 8374 chr2R 12789298 intron,3` UTR sca +,CR45137 - chr2R 12793485 intron,intron sca +,CR45137 - chr2R 12797672 intron,3` UTR sca +,CR45137 - chr2R_14_12790001 chr2R_12790001 RAL-181 643 chr2R 12808325 12808348 chr2R 12808420 12808443 11 92 6.5 6.5 6.5 1.5 118 chr2R 12808325 intergenic not near genes chr2R 12808384 intergenic not near genes chr2R 12808443 intergenic not near genes chr2R_11_12805001 chr2R_12805001 RAL-181 644 chr2R 12819475 12819479 chr2R 12824528 12824549 jockey 5 5064 3.0 6.5 4.8 0.9 5074 chr2R 12819475 intergenic not near genes chr2R 12822012 intergenic not near genes chr2R 12824549 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-181 645 chr2R 12855599 12855625 chr2R 12855674 12855699 17 75 7.5 5.0 6.2 2.4 100 chr2R 12855599 intron CG17574 - chr2R 12855649 intron CG17574 - chr2R 12855699 intron CG17574 - chr2R_17_12855001 chr2R_12855001 RAL-181 646 chr2R 12951667 12951695 chr2R 12951748 12951774 8 78 2.5 4.0 3.2 1.9 107 chr2R 12951667 intron,intron CG44251 -,CG44250 - chr2R 12951720 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_8_12950001 chr2R_12950001 RAL-181 647 chr2R 13136840 13136855 chr2R 13141638 13141653 Doc 12 4797 7.5 9.0 8.2 1.3 4813 chr2R 13136840 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141653 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-181 648 chr2R 13136857 13136869 chr2R 13141632 13141666 Doc 10 4790 5.0 8.5 6.8 1.3 4809 chr2R 13136857 exon Cap-G + chr2R 13139262 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_10_13135001 chr2R_13135001 RAL-181 649 chr2R 13309663 13309682 chr2R 13309781 13309796 6 117 3.5 0.0 1.8 2.1 133 chr2R 13309663 intergenic not near genes chr2R 13309730 intergenic not near genes chr2R 13309796 intergenic not near genes chr2R_6_13305001 chr2R_13305001 RAL-181 650 chr2R 13321927 13321960 chr2R 13322033 13322065 8 104 3.5 0.5 2.0 2.7 138 chr2R 13321927 intergenic not near genes chr2R 13321996 intergenic not near genes chr2R 13322065 intergenic not near genes chr2R_8_13320001 chr2R_13320001 RAL-181 651 chr2R 13431488 13431514 chr2R 13431567 13431593 6 78 2.5 1.5 2.0 2.0 105 chr2R 13431488 intron CG42321 - chr2R 13431540 intron CG42321 - chr2R 13431593 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-181 652 chr2R 13439120 13439225 chr2R 13439224 13439289 4 95 0.0 0.0 0.0 4.0 169 chr2R 13439120 intergenic CG42321 -,cnn - chr2R 13439204 intergenic cnn -,CG42321 - chr2R 13439289 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-181 653 chr2R 13574398 13574429 chr2R 13574479 13574510 10 80 5.0 2.0 3.5 2.2 112 chr2R 13574398 intergenic CG42808 - chr2R 13574454 intergenic CG42808 -,CR44365 + chr2R 13574510 intergenic CG42808 -,CR44365 + chr2R_10_13570001 chr2R_13570001 RAL-181 654 chr2R 13580510 13580515 chr2R 13580860 13580865 jockey 4 349 0.5 9.5 5.0 0.7 355 chr2R 13580510 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580865 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-181 655 chr2R 13631068 13631097 chr2R 13631167 13631199 5 100 3.5 4.0 3.8 1.0 131 chr2R 13631068 intron fas + chr2R 13631134 intron fas + chr2R 13631199 intron fas + chr2R_5_13630001 chr2R_13630001 RAL-181 656 chr2R 13648489 13648519 chr2R 13648672 13648705 11 185 3.0 4.5 3.8 2.3 216 chr2R 13648489 intron fas + chr2R 13648597 intron fas + chr2R 13648705 intron fas + chr2R_11_13645001 chr2R_13645001 RAL-181 657 chr2R 13685177 13685194 chr2R 13685255 13685272 4 78 8.5 8.0 8.2 0.4 95 chr2R 13685177 intron fas + chr2R 13685224 intron fas + chr2R 13685272 intron fas + chr2R_4_13685001 chr2R_13685001 RAL-181 658 chr2R 13685196 13685203 chr2R 13685254 13685272 6 68 5.0 8.0 6.5 0.8 76 chr2R 13685196 intron fas + chr2R 13685234 intron fas + chr2R 13685272 intron fas + chr2R_6_13685001 chr2R_13685001 RAL-181 659 chr2R 13721208 13721228 chr2R 13721288 13721300 7 78 8.0 3.0 5.5 1.1 92 chr2R 13721208 intron fas + chr2R 13721254 intron fas + chr2R 13721300 intron fas + chr2R_7_13720001 chr2R_13720001 RAL-181 660 chr2R 13728132 13728162 chr2R 13735789 13735805 opus 5 7653 1.5 0.0 0.8 2.8 7673 chr2R 13728132 intron fas + chr2R 13731968 intron fas + chr2R 13735805 intron fas + chr2R_5_13730001 chr2R_13730001 RAL-181 661 chr2R 13793150 13793153 chr2R 13793225 13793227 4 75 8.0 2.0 5.0 0.7 77 chr2R 13793150 intergenic not near genes chr2R 13793188 intergenic not near genes chr2R 13793227 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-181 662 chr2R 13793154 13793160 chr2R 13793222 13793236 7 74 7.0 2.0 4.5 1.3 82 chr2R 13793154 intergenic not near genes chr2R 13793195 intergenic not near genes chr2R 13793236 intergenic not near genes chr2R_7_13790001 chr2R_13790001 RAL-181 663 chr2R 13854954 13854980 chr2R 13855239 13855265 5 285 1.0 4.0 2.5 1.4 311 chr2R 13854954 intron,intron CG6553 -,CR44367 + chr2R 13855110 exon,5` UTR CG6553 -,CR44367 + chr2R 13855265 exon,5` UTR CG6553 -,CR44367 + chr2R_5_13855001 chr2R_13855001 RAL-181 664 chr2R 13905601 13905635 chr2R 13907582 13907602 Rt1a 15 1976 4.0 4.5 4.2 2.9 2001 chr2R 13905601 intron shot - chr2R 13906602 intron shot - chr2R 13907602 intron shot - chr2R_15_13905001 chr2R_13905001 RAL-181 665 chr2R 13925869 13925891 chr2R 13926022 13926045 7 154 2.0 3.0 2.5 2.0 176 chr2R 13925869 intron shot - chr2R 13925957 intron shot - chr2R 13926045 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-181 666 chr2R 14018155 14018190 chr2R 14018239 14018274 4 80 2.0 1.0 1.5 1.6 119 chr2R 14018155 intron mam + chr2R 14018214 intron mam + chr2R 14018274 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-181 667 chr2R 14093432 14093453 chr2R 14109583 14109590 4 16147 3.5 1.5 2.5 1.1 16158 chr2R 14093432 intron Prosap - chr2R 14101511 intron Prosap - chr2R 14109590 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-181 668 chr2R 14290296 14290324 chr2R 14290388 14290415 5 91 2.5 6.0 4.2 1.0 119 chr2R 14290296 intron Ih + chr2R 14290356 intron Ih + chr2R 14290415 intron Ih + chr2R_5_14290001 chr2R_14290001 RAL-181 669 chr2R 14393867 14393895 chr2R 14393949 14393980 23 82 6.5 6.0 6.2 3.2 113 chr2R 14393867 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_23_14390001 chr2R_14390001 RAL-181 670 chr2R 14394231 14394251 chr2R 14399020 14399022 Doc 7 4786 5.0 2.5 3.8 1.5 4791 chr2R 14394231 intergenic not near genes chr2R 14396626 intergenic not near genes chr2R 14399022 intergenic not near genes chr2R_7_14395001 chr2R_14395001 RAL-181 671 chr2R 14467307 14467324 chr2R 14476465 14476481 roo 10 9157 5.5 7.5 6.5 1.3 9174 chr2R 14467307 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476481 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-181 672 chr2R 14497392 14497412 chr2R 14498556 14498578 1360 5 1164 2.0 3.0 2.5 1.4 1186 chr2R 14497392 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498578 3` UTR Cpsf160 - chr2R_5_14495001 chr2R_14495001 RAL-181 673 chr2R 14536220 14536249 chr2R 14536335 14536362 9 114 0.0 6.0 3.0 2.2 142 chr2R 14536220 intron ttv + chr2R 14536291 intron ttv + chr2R 14536362 intron ttv + chr2R_9_14535001 chr2R_14535001 RAL-181 674 chr2R 14538971 14538991 chr2R 14539040 14539052 12 70 5.0 8.5 6.8 1.5 81 chr2R 14538971 intron ttv + chr2R 14539012 intron ttv + chr2R 14539052 intron ttv + chr2R_12_14535001 chr2R_14535001 RAL-181 675 chr2R 14542764 14542792 chr2R 14542861 14542876 16 92 5.0 4.5 4.8 2.8 112 chr2R 14542764 intron ttv + chr2R 14542820 intron ttv + chr2R 14542876 intron ttv + chr2R_16_14540001 chr2R_14540001 RAL-181 676 chr2R 14550534 14550547 chr2R 14550613 14550618 4 74 1.5 5.0 3.2 1.0 84 chr2R 14550534 intron ttv + chr2R 14550576 intron ttv + chr2R 14550618 intron ttv + chr2R_4_14550001 chr2R_14550001 RAL-181 677 chr2R 14566432 14566447 chr2R 14566531 14566547 11 99 5.0 4.5 4.8 1.9 115 chr2R 14566432 intron ttv + chr2R 14566490 intron ttv + chr2R 14566547 intron ttv + chr2R_11_14565001 chr2R_14565001 RAL-181 678 chr2R 14634281 14634316 chr2R 14634367 14634404 33 85 4.5 6.0 5.2 5.3 123 chr2R 14634281 intergenic not near genes chr2R 14634342 intergenic not near genes chr2R 14634404 intergenic not near genes chr2R_33_14630001 chr2R_14630001 RAL-181 679 chr2R 14656127 14656151 chr2R 14656197 14656227 8 68 4.0 6.0 5.0 1.3 100 chr2R 14656127 intergenic not near genes chr2R 14656177 intergenic not near genes chr2R 14656227 intergenic not near genes chr2R_8_14655001 chr2R_14655001 RAL-181 680 chr2R 14797619 14797631 chr2R 14797698 14797726 7 92 0.5 0.0 0.2 5.8 107 chr2R 14797619 intron kn - chr2R 14797672 intron kn - chr2R 14797726 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-181 681 chr2R 14850055 14850089 chr2R 14850161 14850195 52 103 48.5 50.0 49.2 1.0 140 chr2R 14850055 exon SMC2 - chr2R 14850125 intron SMC2 - chr2R 14850195 exon SMC2 - chr2R_52_14850001 chr2R_14850001 RAL-181 682 chr2R 14855038 14855048 chr2R 14855126 14855139 7 90 9.5 1.0 5.2 1.1 101 chr2R 14855038 5` UTR Ciao1 - chr2R 14855088 intergenic Ciao1 -,HPS1 + chr2R 14855139 intergenic Ciao1 -,HPS1 + chr2R_7_14855001 chr2R_14855001 RAL-181 683 chr2R 14889208 14889236 chr2R 14897816 14897844 Max-element 4 8608 1.5 0.0 0.8 2.2 8636 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893526 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-181 684 chr2R 14906496 14906517 chr2R 14906597 14906627 4 108 1.5 2.0 1.8 1.4 131 chr2R 14906496 intron CG10249 - chr2R 14906562 intron CG10249 - chr2R 14906627 intron CG10249 - chr2R_4_14905001 chr2R_14905001 RAL-181 685 chr2R 14911704 14911725 chr2R 14911824 14911848 8 122 6.0 2.5 4.2 1.5 144 chr2R 14911704 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911848 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-181 686 chr2R 14917851 14917882 chr2R 14917933 14917967 15 84 3.0 5.5 4.2 2.9 116 chr2R 14917851 intron CG10249 - chr2R 14917909 intron CG10249 - chr2R 14917967 intron CG10249 - chr2R_15_14915001 chr2R_14915001 RAL-181 687 chr2R 14922156 14922172 chr2R 14922217 14922247 9 73 3.5 5.5 4.5 1.6 91 chr2R 14922156 intron CG10249 - chr2R 14922202 intron CG10249 - chr2R 14922247 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-181 688 chr2R 14985457 14985465 chr2R 14985530 14985540 6 75 3.5 5.5 4.5 1.1 83 chr2R 14985457 intron pcs + chr2R 14985498 intron pcs + chr2R 14985540 intron pcs + chr2R_6_14985001 chr2R_14985001 RAL-181 689 chr2R 14985467 14985480 chr2R 14985528 14985556 10 71 2.5 5.0 3.8 2.1 89 chr2R 14985467 intron pcs + chr2R 14985512 intron pcs + chr2R 14985556 intron pcs + chr2R_10_14985001 chr2R_14985001 RAL-181 690 chr2R 15004728 15004756 chr2R 15005054 15005085 jockey 8 326 2.5 4.5 3.5 1.8 357 chr2R 15004728 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005085 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-181 691 chr2R 15015458 15015490 chr2R 15022878 15022914 mdg1 8 7423 2.0 2.5 2.2 2.5 7456 chr2R 15015458 intron hbs + chr2R 15019186 intron hbs + chr2R 15022914 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-181 692 chr2R 15065615 15065649 chr2R 15065693 15065705 14 67 5.0 5.5 5.2 2.3 90 chr2R 15065615 intergenic not near genes chr2R 15065660 intergenic not near genes chr2R 15065705 intergenic not near genes chr2R_14_15065001 chr2R_15065001 RAL-181 693 chr2R 15119320 15119351 chr2R 15127797 15127805 Tirant 12 8475 3.0 4.0 3.5 2.7 8485 chr2R 15119320 intron chn + chr2R 15123562 intron chn + chr2R 15127805 intron chn + chr2R_12_15120001 chr2R_15120001 RAL-181 694 chr2R 15137977 15138003 chr2R 15138057 15138085 6 81 2.5 0.0 1.2 2.7 108 chr2R 15137977 intron chn + chr2R 15138031 intron chn + chr2R 15138085 intron chn + chr2R_6_15135001 chr2R_15135001 RAL-181 695 chr2R 15153082 15153110 chr2R 15153163 15153187 14 83 6.0 9.0 7.5 1.6 105 chr2R 15153082 intergenic not near genes chr2R 15153134 intergenic not near genes chr2R 15153187 intergenic not near genes chr2R_14_15150001 chr2R_15150001 RAL-181 696 chr2R 15196110 15196127 chr2R 15196206 15196223 10 95 5.5 4.0 4.8 1.7 113 chr2R 15196110 intergenic not near genes chr2R 15196166 intergenic not near genes chr2R 15196223 intergenic not near genes chr2R_10_15195001 chr2R_15195001 RAL-181 697 chr2R 15283274 15283296 chr2R 15283363 15283364 5 81 2.5 3.5 3.0 1.2 90 chr2R 15283274 intron Trpm - chr2R 15283319 intron Trpm - chr2R 15283364 intron Trpm - chr2R_5_15280001 chr2R_15280001 RAL-181 698 chr2R 15296160 15296171 chr2R 15296243 15296254 7 82 9.5 5.0 7.2 0.9 94 chr2R 15296160 intron Trpm - chr2R 15296207 intron Trpm - chr2R 15296254 intron Trpm - chr2R_7_15295001 chr2R_15295001 RAL-181 699 chr2R 15330204 15330238 chr2R 15330338 15330372 11 133 1.5 2.5 2.0 3.7 168 chr2R 15330204 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330372 intergenic CR44371 - chr2R_11_15330001 chr2R_15330001 RAL-181 700 chr2R 15374068 15374092 chr2R 15374140 15374167 4 74 6.0 1.5 3.8 0.8 99 chr2R 15374068 intergenic not near genes chr2R 15374118 intergenic not near genes chr2R 15374167 intergenic not near genes chr2R_4_15370001 chr2R_15370001 RAL-181 701 chr2R 15375065 15375077 chr2R 15375185 15375197 6 120 4.5 2.0 3.2 1.4 132 chr2R 15375065 intergenic not near genes chr2R 15375131 intergenic not near genes chr2R 15375197 intergenic not near genes chr2R_6_15375001 chr2R_15375001 RAL-181 702 chr2R 15702957 15702972 chr2R 15703034 15703049 4 77 3.5 2.0 2.8 1.1 92 chr2R 15702957 intergenic not near genes chr2R 15703003 intergenic not near genes chr2R 15703049 intergenic not near genes chr2R_4_15700001 chr2R_15700001 RAL-181 703 chr2R 15818810 15818832 chr2R 15819013 15819034 5 203 0.5 2.0 1.2 2.3 224 chr2R 15818810 intron tun + chr2R 15818922 intron tun + chr2R 15819034 intron tun + chr2R_5_15815001 chr2R_15815001 RAL-181 704 chr2R 15869336 15869365 chr2R 15869417 15869445 5 76 1.0 2.5 1.8 1.8 109 chr2R 15869336 intergenic sli -,Rif1 - chr2R 15869390 intergenic sli -,Rif1 - chr2R 15869445 intergenic sli -,Rif1 - chr2R_5_15865001 chr2R_15865001 RAL-181 705 chr2R 15898882 15898911 chr2R 15898977 15899008 8 97 4.0 6.5 5.2 1.3 126 chr2R 15898882 intron sli - chr2R 15898945 intron sli - chr2R 15899008 intron sli - chr2R_8_15895001 chr2R_15895001 RAL-181 706 chr2R 16106624 16106644 chr2R 16106863 16106893 11 242 37.0 26.0 31.5 0.3 269 chr2R 16106624 3` UTR Rho1 + chr2R 16106758 3` UTR Rho1 + chr2R 16106893 3` UTR Rho1 + chr2R_11_16105001 chr2R_16105001 RAL-181 707 chr2R 16289609 16289622 chr2R 16289703 16289708 4 89 1.0 0.5 0.8 2.2 99 chr2R 16289609 intron,intron CR43730 -,JhI-26 + chr2R 16289658 intron,intron CR43730 -,JhI-26 + chr2R 16289708 intron,intron CR43730 -,JhI-26 + chr2R_4_16285001 chr2R_16285001 RAL-181 708 chr2R 16547018 16547032 chr2R 16547079 16547111 5 72 0.0 1.0 0.5 3.3 93 chr2R 16547018 intergenic not near genes chr2R 16547064 intergenic not near genes chr2R 16547111 intergenic not near genes chr2R_5_16545001 chr2R_16545001 RAL-181 709 chr2R 16618730 16618745 chr2R 16618799 16618802 6 69 2.0 6.5 4.2 1.2 72 chr2R 16618730 intron CG5065 + chr2R 16618766 intron CG5065 + chr2R 16618802 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-181 710 chr2R 16702007 16702025 chr2R 16702094 16702112 4 86 3.0 8.5 5.8 0.6 105 chr2R 16702007 intron CG30463 - chr2R 16702060 intron CG30463 - chr2R 16702112 intron CG30463 - chr2R_4_16700001 chr2R_16700001 RAL-181 711 chr2R 16736759 16736785 chr2R 16736837 16736864 8 78 7.0 0.0 3.5 1.8 105 chr2R 16736759 intergenic CG43104 - chr2R 16736812 3` UTR CG43104 - chr2R 16736864 3` UTR CG43104 - chr2R_8_16735001 chr2R_16735001 RAL-181 712 chr2R 16737136 16737165 chr2R 16737236 16737265 17 99 8.5 8.0 8.2 1.8 129 chr2R 16737136 3` UTR CG43104 - chr2R 16737200 3` UTR CG43104 - chr2R 16737265 exon CG43104 - chr2R_17_16735001 chr2R_16735001 RAL-181 713 chr2R 16740896 16740905 chr2R 16740988 16740999 5 93 7.5 9.5 8.5 0.5 103 chr2R 16740896 intergenic not near genes chr2R 16740948 intergenic not near genes chr2R 16740999 intergenic not near genes chr2R_5_16740001 chr2R_16740001 RAL-181 714 chr2R 16740907 16740921 chr2R 16740986 16741013 12 89 3.0 9.0 6.0 1.7 106 chr2R 16740907 intergenic not near genes chr2R 16740960 intergenic not near genes chr2R 16741013 intergenic not near genes chr2R_12_16740001 chr2R_16740001 RAL-181 715 chr2R 16775664 16775673 chr2R 16775921 16775940 6 265 1.0 5.5 3.2 1.4 276 chr2R 16775664 3` UTR Arp53D + chr2R 16775802 intergenic Arp53D + chr2R 16775940 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-181 716 chr2R 16808023 16808055 chr2R 16808127 16808159 7 99 5.5 2.5 4.0 1.4 136 chr2R 16808023 intergenic not near genes chr2R 16808091 intergenic not near genes chr2R 16808159 intergenic not near genes chr2R_7_16805001 chr2R_16805001 RAL-181 717 chr2R 17098649 17098664 chr2R 17098738 17098752 4 88 7.0 3.0 5.0 0.7 103 chr2R 17098649 intergenic GstS1 - chr2R 17098700 intergenic GstS1 - chr2R 17098752 intergenic GstS1 - chr2R_4_17095001 chr2R_17095001 RAL-181 718 chr2R 17147242 17147256 chr2R 17152273 17152287 jockey 7 5031 5.5 7.5 6.5 0.9 5045 chr2R 17147242 intergenic not near genes chr2R 17149764 intergenic not near genes chr2R 17152287 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-181 719 chr2R 17147260 17147269 chr2R 17152271 17152300 jockey 7 5027 3.5 7.0 5.2 1.1 5040 chr2R 17147260 intergenic not near genes chr2R 17149780 intergenic not near genes chr2R 17152300 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-181 720 chr2R 17161356 17161361 chr2R 17161563 17161568 4 207 8.5 0.0 4.2 0.8 212 chr2R 17161356 intergenic not near genes chr2R 17161462 intergenic not near genes chr2R 17161568 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-181 721 chr2R 17176352 17176389 chr2R 17182542 17182579 diver 10 6189 3.0 2.5 2.8 2.6 6227 chr2R 17176352 intergenic not near genes chr2R 17179466 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_10_17175001 chr2R_17175001 RAL-181 722 chr2R 17236508 17236542 chr2R 17241711 17241741 copia 16 5203 4.0 6.5 5.2 2.6 5233 chr2R 17236508 intron mbl + chr2R 17239124 intron mbl + chr2R 17241741 intron mbl + chr2R_16_17235001 chr2R_17235001 RAL-181 723 chr2R 17443782 17443802 chr2R 17443853 17443878 4 75 0.5 0.5 0.5 2.7 96 chr2R 17443782 intron EDTP - chr2R 17443830 intron EDTP - chr2R 17443878 intron EDTP - chr2R_4_17440001 chr2R_17440001 RAL-181 724 chr2R 17459009 17459035 chr2R 17459090 17459109 10 83 4.0 1.5 2.8 2.6 100 chr2R 17459009 intron CG14478 + chr2R 17459059 intron CG14478 + chr2R 17459109 intron CG14478 + chr2R_10_17455001 chr2R_17455001 RAL-181 725 chr2R 17478846 17478853 chr2R 17478921 17478921 6 73 9.0 11.0 10.0 0.5 75 chr2R 17478846 3` UTR,intron CG43110 -,veil + chr2R 17478884 3` UTR,intron CG43110 -,veil + chr2R 17478921 3` UTR,intron CG43110 -,veil + chr2R_6_17475001 chr2R_17475001 RAL-181 726 chr2R 17710014 17710109 chr2R 17710105 17710187 5 80 0.0 0.5 0.2 4.2 173 chr2R 17710014 intron CG6424 - chr2R 17710100 intron CG6424 - chr2R 17710187 intron CG6424 - chr2R_5_17710001 chr2R_17710001 RAL-181 727 chr2R 17784029 17784057 chr2R 17784265 17784298 pogo 15 237 6.5 7.5 7.0 1.9 269 chr2R 17784029 intergenic mir-31a - chr2R 17784164 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_15_17780001 chr2R_17780001 RAL-181 728 chr2R 17922682 17922708 chr2R 17922805 17922835 16 126 1.5 6.5 4.0 3.2 153 chr2R 17922682 intron Elk + chr2R 17922758 intron Elk + chr2R 17922835 intron Elk + chr2R_16_17920001 chr2R_17920001 RAL-181 729 chr2R 17982930 17982952 chr2R 17983015 17983037 4 85 3.5 3.5 3.5 0.9 107 chr2R 17982930 intron dpr13 - chr2R 17982984 intron dpr13 - chr2R 17983037 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-181 730 chr2R 18187504 18187530 chr2R 18187588 18187614 12 83 3.0 2.0 2.5 3.4 110 chr2R 18187504 intron CG33958 - chr2R 18187559 intron CG33958 - chr2R 18187614 intron CG33958 - chr2R_12_18185001 chr2R_18185001 RAL-181 731 chr2R 18264078 18264091 chr2R 18264163 18264176 7 84 6.0 9.5 7.8 0.8 98 chr2R 18264078 intergenic not near genes chr2R 18264127 intergenic not near genes chr2R 18264176 intergenic not near genes chr2R_7_18260001 chr2R_18260001 RAL-181 732 chr2R 18358387 18358421 chr2R 18372599 18372633 roo 20 14210 4.5 0.0 2.2 6.2 14246 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_20_18365001 chr2R_18365001 RAL-181 733 chr2R 18407289 18407307 chr2R 18408232 18408233 4 934 32.0 27.0 29.5 0.1 944 chr2R 18407289 exon GstE7 + chr2R 18407761 intergenic GstE8 +,GstE7 + chr2R 18408233 exon GstE8 + chr2R_4_18405001 chr2R_18405001 RAL-181 734 chr2R 18408280 18408312 chr2R 18408401 18408403 21 119 9.0 6.0 7.5 2.5 123 chr2R 18408280 exon GstE8 + chr2R 18408342 exon GstE8 + chr2R 18408403 exon GstE8 + chr2R_21_18405001 chr2R_18405001 RAL-181 735 chr2R 18528205 18528211 chr2R 18528290 18528296 4 85 12.0 5.5 8.8 0.4 91 chr2R 18528205 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528296 intron CG10924 + chr2R_4_18525001 chr2R_18525001 RAL-181 736 chr2R 18575157 18575160 chr2R 18575374 18575377 5 217 0.5 7.5 4.0 1.0 220 chr2R 18575157 intron GEFmeso - chr2R 18575267 intron GEFmeso - chr2R 18575377 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-181 737 chr2R 18575817 18575830 chr2R 18581983 18582018 3S18 6 6175 6.0 8.0 7.0 0.8 6201 chr2R 18575817 intron GEFmeso - chr2R 18578918 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-181 738 chr2R 18590866 18590898 chr2R 18600017 18600046 roo 13 9150 5.5 3.5 4.5 2.4 9180 chr2R 18590866 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600046 intron GEFmeso - chr2R_13_18595001 chr2R_18595001 RAL-181 739 chr2R 18646414 18646436 chr2R 18646559 18646581 7 145 2.0 6.5 4.2 1.3 167 chr2R 18646414 intron SP2637 - chr2R 18646498 intron SP2637 - chr2R 18646581 intron SP2637 - chr2R_7_18645001 chr2R_18645001 RAL-181 740 chr2R 18692900 18692919 chr2R 18692987 18693006 9 85 4.5 2.0 3.2 2.1 106 chr2R 18692900 intron Sik3 + chr2R 18692953 intron Sik3 + chr2R 18693006 intron Sik3 + chr2R_9_18690001 chr2R_18690001 RAL-181 741 chr2R 18808063 18808083 chr2R 18808152 18808172 5 87 0.0 0.0 0.0 5.0 109 chr2R 18808063 intergenic CG15096 - chr2R 18808118 intergenic CG15096 - chr2R 18808172 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 RAL-181 742 chr2R 18835900 18835910 chr2R 18835978 18835991 6 81 3.0 0.0 1.5 2.4 91 chr2R 18835900 intron CG15083 + chr2R 18835946 intron CG15083 + chr2R 18835991 intron CG15083 + chr2R_6_18835001 chr2R_18835001 RAL-181 743 chr2R 18847613 18847624 chr2R 18847694 18847707 5 80 7.0 7.0 7.0 0.6 94 chr2R 18847613 exon CG15100 - chr2R 18847660 exon CG15100 - chr2R 18847707 exon CG15100 - chr2R_5_18845001 chr2R_18845001 RAL-181 744 chr2R 18847628 18847634 chr2R 18847693 18847716 6 79 6.5 7.0 6.8 0.8 88 chr2R 18847628 exon CG15100 - chr2R 18847672 exon CG15100 - chr2R 18847716 exon CG15100 - chr2R_6_18845001 chr2R_18845001 RAL-181 745 chr2R 18871646 18871680 chr2R 18871731 18871765 14 85 5.5 0.0 2.8 3.7 119 chr2R 18871646 intergenic not near genes chr2R 18871706 intergenic not near genes chr2R 18871765 intergenic not near genes chr2R_14_18870001 chr2R_18870001 RAL-181 746 chr2R 18880355 18880388 chr2R 18880440 18880447 10 81 3.5 4.5 4.0 2.0 92 chr2R 18880355 intron sano + chr2R 18880401 intron sano + chr2R 18880447 intron sano + chr2R_10_18880001 chr2R_18880001 RAL-181 747 chr2R 18926514 18926530 chr2R 18926591 18926617 4 84 2.5 2.5 2.5 1.1 103 chr2R 18926514 intron sano + chr2R 18926566 intron sano + chr2R 18926617 intron sano + chr2R_4_18925001 chr2R_18925001 RAL-181 748 chr2R 18953162 18953189 chr2R 18953249 18953275 8 86 1.5 2.0 1.8 2.9 113 chr2R 18953162 intron sano + chr2R 18953218 intron sano + chr2R 18953275 intron sano + chr2R_8_18950001 chr2R_18950001 RAL-181 749 chr2R 18964917 18964949 chr2R 18964993 18964993 7 71 4.5 2.5 3.5 1.6 76 chr2R 18964917 intergenic not near genes chr2R 18964955 intergenic not near genes chr2R 18964993 intergenic not near genes chr2R_7_18960001 chr2R_18960001 RAL-181 750 chr2R 18984468 18984491 chr2R 18984727 18984750 11 257 7.0 2.0 4.5 2.0 282 chr2R 18984468 intergenic not near genes chr2R 18984609 intergenic not near genes chr2R 18984750 intergenic not near genes chr2R_11_18980001 chr2R_18980001 RAL-181 751 chr2R 19065812 19065835 chr2R 19065895 19065918 11 80 5.5 6.0 5.8 1.6 106 chr2R 19065812 intergenic not near genes chr2R 19065865 intergenic not near genes chr2R 19065918 intergenic not near genes chr2R_11_19065001 chr2R_19065001 RAL-181 752 chr2R 19331233 19331264 chr2R 19331313 19331342 10 77 8.0 7.0 7.5 1.2 109 chr2R 19331233 intron,intron Rgk1 -,CG34045 + chr2R 19331288 intron,intron Rgk1 -,CG34045 + chr2R 19331342 intron,intron Rgk1 -,CG34045 + chr2R_10_19330001 chr2R_19330001 RAL-181 753 chr2R 19533563 19533585 chr2R 19533638 19533661 11 74 3.5 7.0 5.2 1.8 98 chr2R 19533563 intron sm - chr2R 19533612 intron sm - chr2R 19533661 intron sm - chr2R_11_19530001 chr2R_19530001 RAL-181 754 chr2R 19535103 19535125 chr2R 19535320 19535342 4 215 5.0 10.0 7.5 0.5 239 chr2R 19535103 intron sm - chr2R 19535222 intron sm - chr2R 19535342 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-181 755 chr2R 19537584 19537608 chr2R 19537681 19537705 11 95 4.5 7.0 5.8 1.6 121 chr2R 19537584 intron sm - chr2R 19537644 intron sm - chr2R 19537705 intron sm - chr2R_11_19535001 chr2R_19535001 RAL-181 756 chr2R 19555580 19555608 chr2R 19555663 19555692 12 84 5.0 4.0 4.5 2.2 112 chr2R 19555580 intron sm - chr2R 19555636 intron sm - chr2R 19555692 intron sm - chr2R_12_19555001 chr2R_19555001 RAL-181 757 chr2R 19575569 19575579 chr2R 19575647 19575657 4 78 1.5 2.0 1.8 1.4 88 chr2R 19575569 intron sm - chr2R 19575613 intron sm - chr2R 19575657 intron sm - chr2R_4_19575001 chr2R_19575001 RAL-181 758 chr2R 19715402 19715428 chr2R 19715482 19715504 9 79 5.5 9.0 7.2 1.1 102 chr2R 19715402 intergenic not near genes chr2R 19715453 intergenic not near genes chr2R 19715504 intergenic not near genes chr2R_9_19715001 chr2R_19715001 RAL-181 759 chr2R 19724023 19724055 chr2R 19724101 19724131 6 78 6.0 1.5 3.8 1.2 108 chr2R 19724023 intergenic not near genes chr2R 19724077 intergenic not near genes chr2R 19724131 intergenic not near genes chr2R_6_19720001 chr2R_19720001 RAL-181 760 chr2R 19776594 19776629 chr2R 19779917 19779952 jockey 16 3320 6.5 3.5 5.0 2.7 3358 chr2R 19776594 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_16_19775001 chr2R_19775001 RAL-181 761 chr2R 19909471 19909507 chr2R 19909549 19909585 19 76 5.5 3.5 4.5 3.5 114 chr2R 19909471 intergenic CR44573 - chr2R 19909528 intergenic CR44573 - chr2R 19909585 intergenic CR44573 - chr2R_19_19905001 chr2R_19905001 RAL-181 762 chr2R 19957443 19957464 chr2R 19962630 19962652 copia 6 5193 3.5 3.5 3.5 1.3 5209 chr2R 19957443 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962652 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-181 763 chr2R 20080602 20080625 chr2R 20080678 20080697 9 76 0.0 5.0 2.5 2.6 95 chr2R 20080602 intergenic not near genes chr2R 20080650 intergenic not near genes chr2R 20080697 intergenic not near genes chr2R_9_20080001 chr2R_20080001 RAL-181 764 chr2R 20223956 20223980 chr2R 20224041 20224060 5 84 4.5 0.0 2.2 1.6 104 chr2R 20223956 intergenic not near genes chr2R 20224008 intergenic not near genes chr2R 20224060 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-181 765 chr2R 20405936 20405963 chr2R 20406040 20406045 7 99 9.5 2.5 6.0 1.0 109 chr2R 20405936 intergenic not near genes chr2R 20405990 intergenic not near genes chr2R 20406045 intergenic not near genes chr2R_7_20405001 chr2R_20405001 RAL-181 766 chr2R 20432484 20432502 chr2R 20432578 20432584 4 92 3.0 5.0 4.0 0.8 100 chr2R 20432484 intron CG12484 + chr2R 20432534 intron CG12484 + chr2R 20432584 intron CG12484 + chr2R_4_20430001 chr2R_20430001 RAL-181 767 chr2R 20541991 20542009 chr2R 20542067 20542087 5 74 7.0 0.0 3.5 1.1 96 chr2R 20541991 intergenic not near genes chr2R 20542039 intergenic not near genes chr2R 20542087 intergenic not near genes chr2R_5_20540001 chr2R_20540001 RAL-181 768 chr2R 20601726 20601751 chr2R 20601809 20601834 12 83 1.0 4.0 2.5 3.4 108 chr2R 20601726 intron bl + chr2R 20601780 intron bl + chr2R 20601834 intron bl + chr2R_12_20600001 chr2R_20600001 RAL-181 769 chr2R 20684093 20684119 chr2R 20684180 20684186 14 84 3.0 3.0 3.0 3.5 93 chr2R 20684093 intergenic not near genes chr2R 20684140 intergenic not near genes chr2R 20684186 intergenic not near genes chr2R_14_20680001 chr2R_20680001 RAL-181 770 chr2R 20739458 20739478 chr2R 20744226 20744246 F-element 8 4767 5.5 8.5 7.0 1.0 4788 chr2R 20739458 intron dpr + chr2R 20741852 intron dpr + chr2R 20744246 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-181 771 chr2R 20760834 20760866 chr2R 20761105 20761133 8 271 0.0 1.0 0.5 5.3 299 chr2R 20760834 intergenic not near genes chr2R 20760984 intergenic not near genes chr2R 20761133 intergenic not near genes chr2R_8_20760001 chr2R_20760001 RAL-181 772 chr2R 20783311 20783333 chr2R 20788083 20788105 F-element 6 4771 1.0 6.5 3.8 1.2 4794 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_6_20785001 chr2R_20785001 RAL-181 773 chr2R 20838063 20838070 chr2R 20838144 20838151 6 80 0.0 3.5 1.8 2.1 88 chr2R 20838063 intron CR44667 + chr2R 20838107 intron CR44667 + chr2R 20838151 intron CR44667 + chr2R_6_20835001 chr2R_20835001 RAL-181 774 chr2R 20962909 20962939 chr2R 20963007 20963037 12 97 3.0 8.0 5.5 1.8 128 chr2R 20962909 intergenic not near genes chr2R 20962973 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_12_20960001 chr2R_20960001 RAL-181 775 chr2R 21151129 21151145 chr2R 21153762 21153778 opus 7 2631 4.5 8.0 6.2 1.0 2649 chr2R 21151129 intron CG30389 - chr2R 21152454 intron CG30389 - chr2R 21153778 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-181 776 chr2R 21175998 21176032 chr2R 21176076 21176106 4 76 0.0 5.5 2.8 1.1 108 chr2R 21175998 intron Pu + chr2R 21176052 intron Pu + chr2R 21176106 intron Pu + chr2R_4_21175001 chr2R_21175001 RAL-181 777 chr2R 21182923 21182941 chr2R 21183149 21183167 7 225 0.0 2.5 1.2 3.2 244 chr2R 21182923 intergenic Pu +,tud + chr2R 21183045 intergenic tud +,Pu + chr2R 21183167 intergenic tud + chr2R_7_21180001 chr2R_21180001 RAL-181 778 chr2R 21217139 21217166 chr2R 21217553 21217580 10 413 4.5 3.0 3.8 2.1 441 chr2R 21217139 exon CG15661 - chr2R 21217360 5` UTR CG15661 - chr2R 21217580 intron CG15661 - chr2R_10_21215001 chr2R_21215001 RAL-181 779 chr2R 21344441 21344468 chr2R 21344527 21344551 17 82 5.5 5.5 5.5 2.6 110 chr2R 21344441 exon CG15666 + chr2R 21344496 intron CG15666 + chr2R 21344551 intron CG15666 + chr2R_17_21340001 chr2R_21340001 RAL-181 780 chr2R 21408369 21408406 chr2R 21408461 21408498 16 89 2.0 0.5 1.2 7.3 129 chr2R 21408369 intron Sdc - chr2R 21408434 intron Sdc - chr2R 21408498 intron Sdc - chr2R_16_21405001 chr2R_21405001 RAL-181 781 chr2R 21541479 21541507 chr2R 21541560 21541573 11 78 5.0 1.5 3.2 2.6 94 chr2R 21541479 intron Egfr + chr2R 21541526 intron Egfr + chr2R 21541573 intron Egfr + chr2R_11_21540001 chr2R_21540001 RAL-181 782 chr2R 21642011 21642031 chr2R 21642079 21642094 10 71 3.0 3.5 3.2 2.4 83 chr2R 21642011 intergenic not near genes chr2R 21642052 intergenic not near genes chr2R 21642094 intergenic not near genes chr2R_10_21640001 chr2R_21640001 RAL-181 783 chr2R 21721573 21721589 chr2R 21721671 21721683 8 97 5.5 1.0 3.2 1.9 110 chr2R 21721573 intron LBR + chr2R 21721628 intron LBR + chr2R 21721683 intron LBR + chr2R_8_21720001 chr2R_21720001 RAL-181 784 chr2R 21753083 21753112 chr2R 21753568 21753587 roo 19 481 9.0 4.5 6.8 2.4 504 chr2R 21753083 intergenic not near genes chr2R 21753335 intergenic not near genes chr2R 21753587 intergenic not near genes chr2R_19_21750001 chr2R_21750001 RAL-181 785 chr2R 21809526 21809554 chr2R 21817765 21817794 roo 13 8238 3.5 5.5 4.5 2.4 8268 chr2R 21809526 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817794 intergenic not near genes chr2R_13_21810001 chr2R_21810001 RAL-181 786 chr2R 21832422 21832436 chr2R 21832826 21832842 11 404 2.5 5.0 3.8 2.3 420 chr2R 21832422 intergenic CG34040 - chr2R 21832632 exon CG34040 - chr2R 21832842 exon CG34040 - chr2R_11_21830001 chr2R_21830001 RAL-181 787 chr2R 21832443 21832450 chr2R 21832825 21832856 6 394 1.5 5.0 3.2 1.4 413 chr2R 21832443 intergenic CG34040 - chr2R 21832650 exon CG34040 - chr2R 21832856 exon CG34040 - chr2R_6_21830001 chr2R_21830001 RAL-181 788 chr2R 21857345 21857371 chr2R 21857436 21857462 10 90 3.0 4.5 3.8 2.1 117 chr2R 21857345 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857462 intergenic not near genes chr2R_10_21855001 chr2R_21855001 RAL-181 789 chr2R 21906271 21906302 chr2R 21906372 21906400 8 101 3.0 2.0 2.5 2.3 129 chr2R 21906271 intron Fili + chr2R 21906336 intron Fili + chr2R 21906400 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-181 790 chr2R 21919875 21919907 chr2R 21919962 21919995 19 86 2.0 6.5 4.2 3.7 120 chr2R 21919875 intron Fili + chr2R 21919935 intron Fili + chr2R 21919995 intron Fili + chr2R_19_21915001 chr2R_21915001 RAL-181 791 chr2R 21932250 21932280 chr2R 21932325 21932358 19 74 5.0 2.5 3.8 4.0 108 chr2R 21932250 intron Fili + chr2R 21932304 intron Fili + chr2R 21932358 intron Fili + chr2R_19_21930001 chr2R_21930001 RAL-181 792 chr2R 21956305 21956319 chr2R 21956377 21956397 9 75 6.0 4.0 5.0 1.5 92 chr2R 21956305 intergenic not near genes chr2R 21956351 intergenic not near genes chr2R 21956397 intergenic not near genes chr2R_9_21955001 chr2R_21955001 RAL-181 793 chr2R 21999207 21999230 chr2R 21999716 21999739 10 505 4.5 1.5 3.0 2.5 532 chr2R 21999207 intron CG34370 - chr2R 21999473 intron CG34370 - chr2R 21999739 intron CG34370 - chr2R_10_21995001 chr2R_21995001 RAL-181 794 chr2R 22000103 22000133 chr2R 22000384 22000396 9 270 3.5 6.0 4.8 1.6 293 chr2R 22000103 intron CG34370 - chr2R 22000250 intron CG34370 - chr2R 22000396 intron CG34370 - chr2R_9_22000001 chr2R_22000001 RAL-181 795 chr2R 22004298 22004316 chr2R 22004392 22004401 6 91 2.0 0.0 1.0 3.0 103 chr2R 22004298 intron CG34370 - chr2R 22004350 intron CG34370 - chr2R 22004401 intron CG34370 - chr2R_6_22000001 chr2R_22000001 RAL-181 796 chr2R 22135450 22135467 chr2R 22135556 22135574 6 106 5.5 5.5 5.5 0.9 124 chr2R 22135450 intergenic not near genes chr2R 22135512 intergenic not near genes chr2R 22135574 intergenic not near genes chr2R_6_22135001 chr2R_22135001 RAL-181 797 chr2R 22194809 22194840 chr2R 22195439 22195470 7 629 3.5 4.0 3.8 1.5 661 chr2R 22194809 intron Swim - chr2R 22195140 intron Swim - chr2R 22195470 intron Swim - chr2R_7_22195001 chr2R_22195001 RAL-181 798 chr2R 22349701 22349725 chr2R 22351478 22351507 jockey 6 1782 3.5 7.5 5.5 0.9 1806 chr2R 22349701 intron Liprin-gamma - chr2R 22350604 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-181 799 chr2R 22360384 22360396 chr2R 22360814 22360829 jockey 6 432 8.0 4.5 6.2 0.8 445 chr2R 22360384 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-181 800 chr2R 22360397 22360412 chr2R 22360809 22360827 jockey 4 417 4.5 4.0 4.2 0.8 430 chr2R 22360397 intron Liprin-gamma - chr2R 22360612 intron Liprin-gamma - chr2R 22360827 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-181 801 chr2R 22380362 22380393 chr2R 22380453 22380473 4 88 1.5 0.0 0.8 2.2 111 chr2R 22380362 intron wrapper + chr2R 22380418 intron wrapper + chr2R 22380473 intron wrapper + chr2R_4_22380001 chr2R_22380001 RAL-181 802 chr2R 22507424 22507445 chr2R 22507496 22507510 6 72 8.5 6.0 7.2 0.7 86 chr2R 22507424 intron px - chr2R 22507467 intron px - chr2R 22507510 intron px - chr2R_6_22505001 chr2R_22505001 RAL-181 803 chr2R 22545621 22545649 chr2R 22545697 22545728 4 78 3.5 2.0 2.8 1.1 107 chr2R 22545621 intron px - chr2R 22545674 intron px - chr2R 22545728 intron px - chr2R_4_22545001 chr2R_22545001 RAL-181 804 chr2R 22574306 22574340 chr2R 22574411 22574425 8 97 2.0 2.0 2.0 2.7 119 chr2R 22574306 intron dnr1 - chr2R 22574366 intron dnr1 - chr2R 22574425 intron dnr1 - chr2R_8_22570001 chr2R_22570001 RAL-181 805 chr2R 22626944 22626970 chr2R 22627021 22627047 6 76 1.0 5.0 3.0 1.5 103 chr2R 22626944 intron CG33143 + chr2R 22626996 intron CG33143 + chr2R 22627047 intron CG33143 + chr2R_6_22625001 chr2R_22625001 RAL-181 806 chr2R 22676983 22677018 chr2R 22677071 22677106 12 83 4.0 2.0 3.0 3.0 123 chr2R 22676983 intergenic not near genes chr2R 22677044 intergenic not near genes chr2R 22677106 intergenic not near genes chr2R_12_22675001 chr2R_22675001 RAL-181 807 chr2R 22757216 22757247 chr2R 22757490 22757519 16 273 8.5 4.5 6.5 2.1 303 chr2R 22757216 intron,intron CG42260 -,CR30267 + chr2R 22757368 intron,intron CG42260 -,CR30267 + chr2R 22757519 intron,intron CG42260 -,CR30267 + chr2R_16_22755001 chr2R_22755001 RAL-181 808 chr2R 22774968 22775001 chr2R 22775379 22775404 jockey 13 417 8.5 5.0 6.8 1.7 436 chr2R 22774968 intron CG42260 - chr2R 22775186 intron CG42260 - chr2R 22775404 intron CG42260 - chr2R_13_22775001 chr2R_22775001 RAL-181 809 chr2R 22785727 22785756 chr2R 22785805 22785834 6 77 1.5 1.0 1.2 2.7 107 chr2R 22785727 intron CG42260 - chr2R 22785780 intron CG42260 - chr2R 22785834 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-181 810 chr2R 22835373 22835397 chr2R 22835444 22835473 14 72 2.5 7.5 5.0 2.3 100 chr2R 22835373 exon CG12490 + chr2R 22835423 exon CG12490 + chr2R 22835473 exon CG12490 + chr2R_14_22835001 chr2R_22835001 RAL-181 811 chr2R 22909525 22909548 chr2R 22909763 22909774 13 234 5.5 8.5 7.0 1.6 249 chr2R 22909525 intron nahoda + chr2R 22909650 intron nahoda + chr2R 22909774 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-181 812 chr2R 22951717 22951868 chr2R 22951857 22951954 14 111 0.0 0.0 0.0 14.0 237 chr2R 22951717 3` UTR CR32835 - chr2R 22951836 3` UTR CR32835 - chr2R 22951954 intron CR32835 - chr2R_14_22950001 chr2R_22950001 RAL-181 813 chr2R 23061777 23061789 chr2R 23061869 23061883 5 91 3.0 7.0 5.0 0.8 106 chr2R 23061777 3` UTR l(2)06496 - chr2R 23061830 3` UTR l(2)06496 - chr2R 23061883 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-181 814 chr2R 23150601 23150618 chr2R 23150683 23150700 5 82 3.0 4.0 3.5 1.1 99 chr2R 23150601 intergenic not near genes chr2R 23150650 intergenic not near genes chr2R 23150700 intergenic not near genes chr2R_5_23150001 chr2R_23150001 RAL-181 815 chr2R 23154313 23154341 chr2R 23154392 23154405 13 76 3.0 5.5 4.2 2.5 92 chr2R 23154313 intron CG9899 + chr2R 23154359 intron CG9899 + chr2R 23154405 intron CG9899 + chr2R_13_23150001 chr2R_23150001 RAL-181 816 chr2R 23186583 23186604 chr2R 23186651 23186670 16 75 4.0 3.0 3.5 3.6 87 chr2R 23186583 intron CG34371 - chr2R 23186626 intron CG34371 - chr2R 23186670 intron CG34371 - chr2R_16_23185001 chr2R_23185001 RAL-181 817 chr2R 23190031 23190058 chr2R 23190104 23190124 7 76 4.5 0.0 2.2 2.2 93 chr2R 23190031 intron CG34371 - chr2R 23190078 intron CG34371 - chr2R 23190124 intron CG34371 - chr2R_7_23190001 chr2R_23190001 RAL-181 818 chr2R 23194312 23194358 chr2R 23194435 23194469 6 113 0.0 4.0 2.0 2.0 157 chr2R 23194312 intron CG34371 - chr2R 23194390 intron CG34371 - chr2R 23194469 intron CG34371 - chr2R_6_23190001 chr2R_23190001 RAL-181 819 chr2R 23219011 23219021 chr2R 23219250 23219259 6 236 9.5 0.0 4.8 1.0 248 chr2R 23219011 intergenic not near genes chr2R 23219135 intergenic not near genes chr2R 23219259 intergenic not near genes chr2R_6_23215001 chr2R_23215001 RAL-181 820 chr2R 23311734 23311763 chr2R 23311850 23311859 6 109 6.5 1.0 3.8 1.2 125 chr2R 23311734 intergenic not near genes chr2R 23311796 intergenic not near genes chr2R 23311859 intergenic not near genes chr2R_6_23310001 chr2R_23310001 RAL-181 821 chr2R 23315390 23315397 chr2R 23315559 23315568 5 171 0.5 6.0 3.2 1.2 178 chr2R 23315390 intergenic not near genes chr2R 23315479 intergenic not near genes chr2R 23315568 intergenic not near genes chr2R_5_23315001 chr2R_23315001 RAL-181 822 chr2R 23348823 23348834 chr2R 23348891 23348914 9 75 4.5 8.0 6.2 1.2 91 chr2R 23348823 intergenic not near genes chr2R 23348868 intergenic not near genes chr2R 23348914 intergenic not near genes chr2R_9_23345001 chr2R_23345001 RAL-181 823 chr2R 23356283 23356288 chr2R 23356366 23356368 5 86 9.5 3.0 6.2 0.7 85 chr2R 23356283 3` UTR Rpi + chr2R 23356326 3` UTR Rpi + chr2R 23356368 3` UTR Rpi + chr2R_5_23355001 chr2R_23355001 RAL-181 824 chr2R 23356289 23356309 chr2R 23356364 23356388 10 84 5.5 3.0 4.2 1.9 99 chr2R 23356289 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356388 3` UTR,3` UTR Rpi +,CG3500 - chr2R_10_23355001 chr2R_23355001 RAL-181 825 chr2R 23433036 23433054 chr2R 23433104 23433132 8 76 1.5 4.0 2.8 2.1 96 chr2R 23433036 intron CG9815 - chr2R 23433084 intron CG9815 - chr2R 23433132 intron CG9815 - chr2R_8_23430001 chr2R_23430001 RAL-181 826 chr2R 23437230 23437244 chr2R 23437306 23437317 5 74 3.0 6.5 4.8 0.9 87 chr2R 23437230 intergenic not near genes chr2R 23437274 intergenic not near genes chr2R 23437317 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-181 827 chr2R 23508929 23508944 chr2R 23509046 23509060 6 114 3.0 2.5 2.8 1.6 131 chr2R 23508929 intergenic not near genes chr2R 23508994 intergenic not near genes chr2R 23509060 intergenic not near genes chr2R_6_23505001 chr2R_23505001 RAL-181 828 chr2R 23529578 23529593 chr2R 23537153 23537167 412 4 7575 9.0 7.0 8.0 0.4 7589 chr2R 23529578 intron bw - chr2R 23533372 intron bw - chr2R 23537167 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-181 829 chr2R 23529595 23529606 chr2R 23537148 23537157 412 7 7559 4.5 4.5 4.5 1.3 7562 chr2R 23529595 exon bw - chr2R 23533376 intron bw - chr2R 23537157 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-181 830 chr2R 23607036 23607190 chr2R 23607117 23607281 15 82 4.0 4.0 4.0 3.0 245 chr2R 23607036 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607281 intron CG17664 - chr2R_15_23605001 chr2R_23605001 RAL-181 831 chr2R 23674181 23674186 chr2R 23674261 23674266 6 80 13.5 6.0 9.8 0.6 85 chr2R 23674181 intron Pde8 + chr2R 23674224 intron Pde8 + chr2R 23674266 intron Pde8 + chr2R_6_23670001 chr2R_23670001 RAL-181 832 chr2R 23791599 23791627 chr2R 23791686 23791715 13 86 3.0 4.5 3.8 2.7 116 chr2R 23791599 intron CG9850 - chr2R 23791657 intron CG9850 - chr2R 23791715 intron CG9850 - chr2R_13_23790001 chr2R_23790001 RAL-181 833 chr2R 23986522 23986548 chr2R 23986592 23986628 7 78 1.0 1.5 1.2 3.2 106 chr2R 23986522 intron Phm - chr2R 23986575 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_7_23985001 chr2R_23985001 RAL-181 834 chr2R 24031379 24031411 chr2R 24031463 24031495 15 82 5.0 5.0 5.0 2.5 116 chr2R 24031379 5` UTR CG30172 - chr2R 24031437 intergenic CG30172 -,Chi - chr2R 24031495 intergenic Chi -,CG30172 - chr2R_15_24030001 chr2R_24030001 RAL-181 835 chr2R 24045880 24045898 chr2R 24045957 24045980 6 82 6.5 2.5 4.5 1.1 100 chr2R 24045880 intron tsr - chr2R 24045930 intron tsr - chr2R 24045980 intron tsr - chr2R_6_24045001 chr2R_24045001 RAL-181 836 chr2R 24177236 24177263 chr2R 24184721 24184744 412 8 7484 4.0 3.0 3.5 1.8 7508 chr2R 24177236 3` UTR Nop60B + chr2R 24180990 intron Nop60B + chr2R 24184744 3` UTR Nop60B + chr2R_8_24180001 chr2R_24180001 RAL-181 837 chr2R 24228425 24228430 chr2R 24228475 24228481 4 59 1.5 3.0 2.2 1.2 56 chr2R 24228425 intron CG30419 - chr2R 24228453 intron CG30419 - chr2R 24228481 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-181 838 chr2R 24321535 24321539 chr2R 24321618 24321623 4 84 11.5 6.0 8.8 0.4 88 chr2R 24321535 intergenic not near genes chr2R 24321579 intergenic not near genes chr2R 24321623 intergenic not near genes chr2R_4_24320001 chr2R_24320001 RAL-181 839 chr2R 24321542 24321554 chr2R 24321610 24321638 6 79 9.5 5.0 7.2 0.7 96 chr2R 24321542 intergenic not near genes chr2R 24321590 intergenic not near genes chr2R 24321638 intergenic not near genes chr2R_6_24320001 chr2R_24320001 RAL-181 840 chr2R 24353442 24353443 chr2R 24361804 24361805 roo 4 8362 2.5 9.5 6.0 0.6 8363 chr2R 24353442 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361805 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-181 841 chr2R 24353445 24353460 chr2R 24361803 24361821 roo 6 8360 1.0 9.5 5.2 1.0 8376 chr2R 24353445 intron,intron bs +,CR44811 - chr2R 24357633 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-181 842 chr2R 24430921 24430946 chr2R 24431009 24431034 7 88 0.0 4.0 2.0 2.3 113 chr2R 24430921 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431034 intergenic Pgam5-2 -,CG15873 - chr2R_7_24430001 chr2R_24430001 RAL-181 843 chr2R 24509312 24509339 chr2R 24509392 24509423 10 82 4.0 5.5 4.8 1.7 111 chr2R 24509312 intergenic Letm1 - chr2R 24509368 intergenic Letm1 - chr2R 24509423 intergenic Letm1 - chr2R_10_24505001 chr2R_24505001 RAL-181 844 chr2R 24518030 24518048 chr2R 24518114 24518128 4 82 6.5 9.5 8.0 0.4 98 chr2R 24518030 intergenic not near genes chr2R 24518079 intergenic not near genes chr2R 24518128 intergenic not near genes chr2R_4_24515001 chr2R_24515001 RAL-181 845 chr2R 24542323 24542356 chr2R 24542572 24542610 16 249 5.5 1.0 3.2 3.8 287 chr2R 24542323 intron,intron CG4622 -,ITP + chr2R 24542466 intron,intron CG4622 -,ITP + chr2R 24542610 intron,intron CG4622 -,ITP + chr2R_16_24540001 chr2R_24540001 RAL-181 846 chr2R 24590117 24590129 chr2R 24590207 24590219 8 89 11.0 7.5 9.2 0.8 102 chr2R 24590117 intron pio + chr2R 24590168 intron pio + chr2R 24590219 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-181 847 chr2R 24590130 24590138 chr2R 24590203 24590227 5 86 7.0 5.5 6.2 0.7 97 chr2R 24590130 intron pio + chr2R 24590178 intron pio + chr2R 24590227 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-181 848 chr2R 24647594 24647618 chr2R 24655144 24655175 412 10 7554 8.0 3.0 5.5 1.5 7581 chr2R 24647594 intergenic not near genes chr2R 24651384 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_10_24650001 chr2R_24650001 RAL-181 849 chr2R 24719808 24719825 chr2R 24719906 24719937 8 106 6.5 6.0 6.2 1.1 129 chr2R 24719808 intron Mid1 - chr2R 24719872 intron Mid1 - chr2R 24719937 intron Mid1 - chr2R_8_24715001 chr2R_24715001 RAL-181 850 chr2R 24727882 24727917 chr2R 24735390 24735424 mdg1 25 7506 3.5 7.0 5.2 4.0 7542 chr2R 24727882 intron Mid1 - chr2R 24731653 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_25_24730001 chr2R_24730001 RAL-181 851 chr2R 24763612 24763642 chr2R 24765588 24765590 G2 12 1970 5.5 3.0 4.2 2.3 1978 chr2R 24763612 exon CG3894 + chr2R 24764601 intron CG3894 + chr2R 24765590 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-181 852 chr2R 24883891 24883912 chr2R 24883969 24883994 10 79 4.5 7.0 5.8 1.5 103 chr2R 24883891 intron NKAIN + chr2R 24883942 intron NKAIN + chr2R 24883994 intron NKAIN + chr2R_10_24880001 chr2R_24880001 RAL-181 853 chr2R 24895072 24895103 chr2R 24897362 24897391 14 2290 37.0 38.5 37.8 0.4 2319 chr2R 24895072 intron NaCP60E + chr2R 24896232 intron NaCP60E + chr2R 24897391 intron NaCP60E + chr2R_14_24895001 chr2R_24895001 RAL-181 854 chr2R 25014545 25014572 chr2R 25014621 25014648 11 72 5.0 4.0 4.5 2.0 103 chr2R 25014545 intron uzip + chr2R 25014596 intron uzip + chr2R 25014648 intron uzip + chr2R_11_25010001 chr2R_25010001 RAL-181 855 chr2R 25101280 25101307 chr2R 25101379 25101409 11 101 5.5 4.5 5.0 1.8 129 chr2R 25101280 intron lov - chr2R 25101344 intron lov - chr2R 25101409 intron lov - chr2R_11_25100001 chr2R_25100001 RAL-181 856 chr2R 25141654 25141683 chr2R 25159344 25159373 roo 4 17690 4.5 4.0 4.2 0.8 17719 chr2R 25141654 intergenic not near genes chr2R 25150514 intergenic not near genes chr2R 25159373 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-181 857 chr3L 29583 29614 chr3L 29970 30001 14 383 3.5 1.0 2.2 4.4 418 chr3L 29583 intergenic not near genes chr3L 29792 intergenic not near genes chr3L 30001 intergenic not near genes chr3L_14_25001 chr3L_25001 RAL-181 858 chr3L 68985 68997 chr3L 69072 69084 8 86 8.0 5.5 6.8 1.0 99 chr3L 68985 3` UTR Lsp1gamma + chr3L 69034 intergenic Lsp1gamma +,CR44510 + chr3L 69084 intergenic CR44510 +,Lsp1gamma + chr3L_8_65001 chr3L_65001 RAL-181 859 chr3L 68998 69015 chr3L 69068 69102 7 85 4.5 5.0 4.8 1.2 104 chr3L 68998 intergenic Lsp1gamma +,CR44510 + chr3L 69050 intergenic Lsp1gamma +,CR44510 + chr3L 69102 intergenic CR44510 +,Lsp1gamma + chr3L_7_65001 chr3L_65001 RAL-181 860 chr3L 93790 93819 chr3L 93871 93882 6 77 1.0 7.5 4.2 1.2 92 chr3L 93790 intergenic not near genes chr3L 93836 intergenic not near genes chr3L 93882 intergenic not near genes chr3L_6_90001 chr3L_90001 RAL-181 861 chr3L 106003 106022 chr3L 106131 106150 5 128 2.0 4.5 3.2 1.2 147 chr3L 106003 intergenic not near genes chr3L 106076 intergenic not near genes chr3L 106150 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-181 862 chr3L 110214 110244 chr3L 119381 119399 roo 10 9166 2.5 2.0 2.2 3.1 9185 chr3L 110214 intergenic not near genes chr3L 114806 intergenic not near genes chr3L 119399 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-181 863 chr3L 402700 402718 chr3L 409742 409770 297 7 7049 5.5 10.5 8.0 0.8 7070 chr3L 402700 intergenic not near genes chr3L 406235 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-181 864 chr3L 421047 421084 chr3L 421143 421180 17 92 2.5 4.5 3.5 3.8 133 chr3L 421047 intergenic not near genes chr3L 421114 intergenic not near genes chr3L 421180 intergenic not near genes chr3L_17_420001 chr3L_420001 RAL-181 865 chr3L 494595 494621 chr3L 494676 494703 5 82 6.5 0.5 3.5 1.1 108 chr3L 494595 intron klar - chr3L 494649 intron klar - chr3L 494703 intron klar - chr3L_5_490001 chr3L_490001 RAL-181 866 chr3L 538031 538056 chr3L 538137 538162 5 106 1.5 4.0 2.8 1.3 131 chr3L 538031 intron klar - chr3L 538096 intron klar - chr3L 538162 intron klar - chr3L_5_535001 chr3L_535001 RAL-181 867 chr3L 642472 642502 chr3L 642557 642593 6 88 2.0 4.5 3.2 1.4 121 chr3L 642472 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-181 868 chr3L 705245 705263 chr3L 705320 705339 12 76 5.5 2.5 4.0 2.4 94 chr3L 705245 intergenic CR44514 + chr3L 705292 intergenic CR44514 + chr3L 705339 5` UTR CR44514 + chr3L_12_705001 chr3L_705001 RAL-181 869 chr3L 717905 717911 chr3L 717992 717999 5 87 0.0 8.5 4.2 1.0 94 chr3L 717905 intergenic not near genes chr3L 717952 intergenic not near genes chr3L 717999 intergenic not near genes chr3L_5_715001 chr3L_715001 RAL-181 870 chr3L 832603 832634 chr3L 832681 832714 16 76 4.0 4.0 4.0 3.2 111 chr3L 832603 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832658 intron CG13900 - chr3L 832714 exon CG13900 - chr3L_16_830001 chr3L_830001 RAL-181 871 chr3L 858006 858031 chr3L 866478 866494 Tirant 11 8475 6.0 5.0 5.5 1.7 8488 chr3L 858006 intergenic not near genes chr3L 862250 intergenic not near genes chr3L 866494 intergenic CG12502 + chr3L_11_860001 chr3L_860001 RAL-181 872 chr3L 875657 875691 chr3L 875744 875777 17 85 4.5 7.5 6.0 2.4 120 chr3L 875657 intron CG32479 + chr3L 875717 intron CG32479 + chr3L 875777 intron CG32479 + chr3L_17_875001 chr3L_875001 RAL-181 873 chr3L 899991 900016 chr3L 900075 900094 7 83 0.0 4.0 2.0 2.3 103 chr3L 899991 intergenic not near genes chr3L 900042 intergenic not near genes chr3L 900094 intergenic not near genes chr3L_7_900001 chr3L_900001 RAL-181 874 chr3L 901420 901455 chr3L 901504 901539 4 83 3.5 1.5 2.5 1.1 119 chr3L 901420 intergenic not near genes chr3L 901480 intergenic not near genes chr3L 901539 intergenic not near genes chr3L_4_900001 chr3L_900001 RAL-181 875 chr3L 925181 925210 chr3L 932600 932634 mdg1 7 7423 3.0 0.0 1.5 2.8 7453 chr3L 925181 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-181 876 chr3L 933913 933941 chr3L 934016 934044 13 102 2.0 3.5 2.8 3.4 131 chr3L 933913 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934044 intron Glut1 + chr3L_13_930001 chr3L_930001 RAL-181 877 chr3L 939772 939784 chr3L 940893 940905 jockey 11 1120 6.5 4.0 5.2 1.8 1133 chr3L 939772 intron Glut1 + chr3L 940338 intron Glut1 + chr3L 940905 intron Glut1 + chr3L_11_940001 chr3L_940001 RAL-181 878 chr3L 939786 939807 chr3L 940888 940921 jockey 6 1113 3.0 3.5 3.2 1.4 1135 chr3L 939786 intron Glut1 + chr3L 940354 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-181 879 chr3L 956147 956157 chr3L 956590 956598 6 450 6.0 10.0 8.0 0.7 451 chr3L 956147 intron Glut1 + chr3L 956372 intron Glut1 + chr3L 956598 intron Glut1 + chr3L_6_955001 chr3L_955001 RAL-181 880 chr3L 1015029 1015048 chr3L 1015138 1015160 12 111 5.0 5.5 5.2 1.9 131 chr3L 1015029 intron trio - chr3L 1015094 intron trio - chr3L 1015160 intron trio - chr3L_12_1015001 chr3L_1015001 RAL-181 881 chr3L 1103991 1104011 chr3L 1104182 1104202 11 190 7.0 4.5 5.8 1.6 211 chr3L 1103991 intergenic not near genes chr3L 1104096 intergenic not near genes chr3L 1104202 intergenic not near genes chr3L_11_1100001 chr3L_1100001 RAL-181 882 chr3L 1145261 1145267 chr3L 1145324 1145346 4 75 6.0 0.0 3.0 1.0 85 chr3L 1145261 intron bab2 - chr3L 1145304 intron bab2 - chr3L 1145346 intron bab2 - chr3L_4_1145001 chr3L_1145001 RAL-181 883 chr3L 1154128 1154161 chr3L 1163278 1163308 roo 7 9149 3.5 3.5 3.5 1.6 9180 chr3L 1154128 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163308 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-181 884 chr3L 1189625 1189656 chr3L 1189711 1189733 14 84 6.5 9.0 7.8 1.6 108 chr3L 1189625 5` UTR CG13912 + chr3L 1189679 5` UTR CG13912 + chr3L 1189733 5` UTR CG13912 + chr3L_14_1185001 chr3L_1185001 RAL-181 885 chr3L 1219599 1219621 chr3L 1227329 1227354 412 13 7729 4.5 6.0 5.2 2.1 7755 chr3L 1219599 intron mwh + chr3L 1223476 intron mwh + chr3L 1227354 intron mwh + chr3L_13_1220001 chr3L_1220001 RAL-181 886 chr3L 1310982 1311008 chr3L 1315842 1315872 16 4865 45.0 44.0 44.5 0.4 4890 chr3L 1310982 exon CG2469 + chr3L 1313427 intergenic CG9186 -,CG9153 + chr3L 1315872 exon CG9153 + chr3L_16_1310001 chr3L_1310001 RAL-181 887 chr3L 1357117 1357148 chr3L 1357196 1357214 16 77 5.0 0.5 2.8 4.2 97 chr3L 1357117 intron Ptp61F - chr3L 1357166 intron Ptp61F - chr3L 1357214 intron Ptp61F - chr3L_16_1355001 chr3L_1355001 RAL-181 888 chr3L 1374435 1374457 chr3L 1374507 1374515 7 70 6.0 3.5 4.8 1.2 80 chr3L 1374435 intron,intron Ptp61F -,ru + chr3L 1374475 intron,intron Ptp61F -,ru + chr3L 1374515 intron,intron Ptp61F -,ru + chr3L_7_1370001 chr3L_1370001 RAL-181 889 chr3L 1396739 1396756 chr3L 1396823 1396831 7 83 19.0 16.0 17.5 0.4 92 chr3L 1396739 intron Ptp61F - chr3L 1396785 intron Ptp61F - chr3L 1396831 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-181 890 chr3L 1415774 1415808 chr3L 1415855 1415887 19 80 2.5 4.5 3.5 4.2 113 chr3L 1415774 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415887 intron Ptp61F - chr3L_19_1415001 chr3L_1415001 RAL-181 891 chr3L 1463416 1463447 chr3L 1463496 1463526 13 78 6.0 5.0 5.5 2.0 110 chr3L 1463416 intron Ptp61F - chr3L 1463471 intron Ptp61F - chr3L 1463526 intron Ptp61F - chr3L_13_1460001 chr3L_1460001 RAL-181 892 chr3L 1505996 1506010 chr3L 1513593 1513607 17.6 4 7596 9.5 3.0 6.2 0.6 7611 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509802 intron,intron Psa +,cue - chr3L 1513607 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-181 893 chr3L 1506013 1506033 chr3L 1513592 1513627 17.6 12 7592 5.0 3.0 4.0 2.4 7614 chr3L 1506013 intron,intron Psa +,cue - chr3L 1509820 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_12_1505001 chr3L_1505001 RAL-181 894 chr3L 1922452 1922468 chr3L 1922530 1922536 5 73 11.0 14.5 12.8 0.4 84 chr3L 1922452 intron Dbx + chr3L 1922494 intron Dbx + chr3L 1922536 intron Dbx + chr3L_5_1920001 chr3L_1920001 RAL-181 895 chr3L 1988108 1988116 chr3L 1988248 1988256 5 139 12.0 7.5 9.8 0.5 148 chr3L 1988108 intergenic not near genes chr3L 1988182 intergenic not near genes chr3L 1988256 intergenic not near genes chr3L_5_1985001 chr3L_1985001 RAL-181 896 chr3L 1988119 1988415 chr3L 1988247 1988496 13 98 3.5 7.5 5.5 2.0 377 chr3L 1988119 intergenic not near genes chr3L 1988308 intergenic not near genes chr3L 1988496 intergenic not near genes chr3L_13_1985001 chr3L_1985001 RAL-181 897 chr3L 2016072 2016104 chr3L 2016208 2016239 12 134 3.0 2.0 2.5 3.4 167 chr3L 2016072 intergenic not near genes chr3L 2016156 intergenic not near genes chr3L 2016239 intergenic not near genes chr3L_12_2015001 chr3L_2015001 RAL-181 898 chr3L 2167262 2167297 chr3L 2167344 2167379 9 80 2.0 0.5 1.2 4.1 117 chr3L 2167262 intergenic CG15879 - chr3L 2167320 intergenic CG15879 - chr3L 2167379 intergenic CG15879 - chr3L_9_2165001 chr3L_2165001 RAL-181 899 chr3L 2168773 2168804 chr3L 2168864 2168892 11 89 1.5 4.5 3.0 2.8 119 chr3L 2168773 exon CG15879 - chr3L 2168832 intron CG15879 - chr3L 2168892 intron CG15879 - chr3L_11_2165001 chr3L_2165001 RAL-181 900 chr3L 2184492 2184524 chr3L 2184589 2184623 20 99 6.5 5.0 5.8 2.9 131 chr3L 2184492 intergenic not near genes chr3L 2184558 intergenic not near genes chr3L 2184623 intergenic not near genes chr3L_20_2180001 chr3L_2180001 RAL-181 901 chr3L 2199812 2199821 chr3L 2199887 2199894 7 75 0.0 6.5 3.2 1.7 82 chr3L 2199812 intergenic not near genes chr3L 2199853 intergenic not near genes chr3L 2199894 intergenic not near genes chr3L_7_2195001 chr3L_2195001 RAL-181 902 chr3L 2282991 2283022 chr3L 2283064 2283097 5 75 1.5 1.5 1.5 2.0 106 chr3L 2282991 5` UTR MsR2 + chr3L 2283044 5` UTR MsR2 + chr3L 2283097 5` UTR MsR2 + chr3L_5_2280001 chr3L_2280001 RAL-181 903 chr3L 2302577 2302600 chr3L 2302653 2302686 15 83 1.5 3.0 2.2 4.7 109 chr3L 2302577 intergenic not near genes chr3L 2302632 intergenic not near genes chr3L 2302686 intergenic not near genes chr3L_15_2300001 chr3L_2300001 RAL-181 904 chr3L 2330772 2330797 chr3L 2330849 2330875 15 77 3.0 1.5 2.2 4.7 103 chr3L 2330772 intron MsR1 + chr3L 2330824 intron MsR1 + chr3L 2330875 intron MsR1 + chr3L_15_2330001 chr3L_2330001 RAL-181 905 chr3L 2447518 2447536 chr3L 2456661 2456691 roo 5 9151 4.0 7.0 5.5 0.8 9173 chr3L 2447518 intron CG45186 + chr3L 2452104 intron CG45186 + chr3L 2456691 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-181 906 chr3L 2470175 2470203 chr3L 2470474 2470503 13 298 2.0 3.0 2.5 3.7 328 chr3L 2470175 intron CG45186 + chr3L 2470339 intron CG45186 + chr3L 2470503 intron CG45186 + chr3L_13_2470001 chr3L_2470001 RAL-181 907 chr3L 2547834 2547853 chr3L 2547925 2547944 4 92 6.0 0.5 3.2 1.0 110 chr3L 2547834 intron Spn - chr3L 2547889 intron Spn - chr3L 2547944 intron Spn - chr3L_4_2545001 chr3L_2545001 RAL-181 908 chr3L 2581903 2581911 chr3L 2581997 2582005 4 94 3.5 2.5 3.0 1.0 102 chr3L 2581903 intron msn - chr3L 2581954 intron msn - chr3L 2582005 intron msn - chr3L_4_2580001 chr3L_2580001 RAL-181 909 chr3L 2590874 2590888 chr3L 2590970 2590984 4 95 7.5 0.0 3.8 0.8 110 chr3L 2590874 intron dos + chr3L 2590929 intron dos + chr3L 2590984 intron dos + chr3L_4_2590001 chr3L_2590001 RAL-181 910 chr3L 2626090 2626099 chr3L 2626190 2626199 4 100 10.0 6.0 8.0 0.4 109 chr3L 2626090 intron Pxn - chr3L 2626144 intron Pxn - chr3L 2626199 intron Pxn - chr3L_4_2625001 chr3L_2625001 RAL-181 911 chr3L 2665744 2665753 chr3L 2665832 2665840 5 86 4.5 4.0 4.2 1.0 96 chr3L 2665744 intron Fife - chr3L 2665792 intron Fife - chr3L 2665840 intron Fife - chr3L_5_2665001 chr3L_2665001 RAL-181 912 chr3L 2674775 2674804 chr3L 2674854 2674884 13 79 2.0 2.5 2.2 4.1 109 chr3L 2674775 intron Fife - chr3L 2674830 intron Fife - chr3L 2674884 intron Fife - chr3L_13_2670001 chr3L_2670001 RAL-181 913 chr3L 2680514 2680517 chr3L 2680593 2680597 5 79 8.5 0.0 4.2 1.0 83 chr3L 2680514 intron Fife - chr3L 2680556 intron Fife - chr3L 2680597 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-181 914 chr3L 2680519 2680543 chr3L 2680592 2680621 8 76 2.5 0.0 1.2 3.6 102 chr3L 2680519 intron Fife - chr3L 2680570 intron Fife - chr3L 2680621 intron Fife - chr3L_8_2680001 chr3L_2680001 RAL-181 915 chr3L 2683958 2683979 chr3L 2684034 2684048 7 74 2.5 5.5 4.0 1.4 90 chr3L 2683958 intron Fife - chr3L 2684003 intron Fife - chr3L 2684048 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-181 916 chr3L 2731637 2731658 chr3L 2731726 2731747 7 89 4.5 2.0 3.2 1.7 110 chr3L 2731637 intron Mrtf - chr3L 2731692 intron Mrtf - chr3L 2731747 intron Mrtf - chr3L_7_2730001 chr3L_2730001 RAL-181 917 chr3L 2854486 2854504 chr3L 2854562 2854582 6 76 4.5 5.5 5.0 1.0 96 chr3L 2854486 intron CG43444 - chr3L 2854534 intron CG43444 - chr3L 2854582 intron CG43444 - chr3L_6_2850001 chr3L_2850001 RAL-181 918 chr3L 2882115 2882142 chr3L 2882191 2882218 14 74 1.0 3.5 2.2 4.4 103 chr3L 2882115 intergenic not near genes chr3L 2882166 intergenic not near genes chr3L 2882218 intergenic not near genes chr3L_14_2880001 chr3L_2880001 RAL-181 919 chr3L 2906062 2906093 chr3L 2906148 2906165 23 82 7.5 7.0 7.2 2.8 103 chr3L 2906062 intron Shab + chr3L 2906114 intron Shab + chr3L 2906165 intron Shab + chr3L_23_2905001 chr3L_2905001 RAL-181 920 chr3L 2927837 2927870 chr3L 2936114 2936147 Tirant 11 8274 0.5 2.0 1.2 5.0 8310 chr3L 2927837 intron Shab + chr3L 2931992 intron Shab + chr3L 2936147 intron Shab + chr3L_11_2930001 chr3L_2930001 RAL-181 921 chr3L 3007301 3007320 chr3L 3007500 3007510 4 194 3.0 3.0 3.0 1.0 209 chr3L 3007301 intron FMRFaR + chr3L 3007406 intron FMRFaR + chr3L 3007510 intron FMRFaR + chr3L_4_3005001 chr3L_3005001 RAL-181 922 chr3L 3061287 3061317 chr3L 3069870 3069881 Tirant 7 8573 3.0 4.0 3.5 1.6 8594 chr3L 3061287 intron CG32486 - chr3L 3065584 intron CG32486 - chr3L 3069881 intron CG32486 - chr3L_7_3065001 chr3L_3065001 RAL-181 923 chr3L 3259817 3259826 chr3L 3259917 3259926 5 100 0.0 1.5 0.8 2.8 109 chr3L 3259817 intron ckd + chr3L 3259872 intron ckd + chr3L 3259926 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-181 924 chr3L 3281440 3281477 chr3L 3281936 3281972 Doc 24 491 6.0 10.0 8.0 2.7 532 chr3L 3281440 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281972 intron CG12017 + chr3L_24_3280001 chr3L_3280001 RAL-181 925 chr3L 3475075 3475110 chr3L 3475519 3475553 jockey 15 441 1.5 4.5 3.0 3.8 478 chr3L 3475075 intron CG42324 + chr3L 3475314 intron CG42324 + chr3L 3475553 intron CG42324 + chr3L_15_3475001 chr3L_3475001 RAL-181 926 chr3L 3487064 3487066 chr3L 3487141 3487144 4 78 13.5 6.5 10.0 0.4 80 chr3L 3487064 intron CG42324 + chr3L 3487104 intron CG42324 + chr3L 3487144 intron CG42324 + chr3L_4_3485001 chr3L_3485001 RAL-181 927 chr3L 3487068 3487090 chr3L 3487136 3487168 11 76 6.0 6.5 6.2 1.5 100 chr3L 3487068 intron CG42324 + chr3L 3487118 intron CG42324 + chr3L 3487168 intron CG42324 + chr3L_11_3485001 chr3L_3485001 RAL-181 928 chr3L 3496550 3496573 chr3L 3497258 3497282 10 706 5.0 6.0 5.5 1.5 732 chr3L 3496550 intron CG42324 + chr3L 3496916 intron CG42324 + chr3L 3497282 intron CG42324 + chr3L_10_3495001 chr3L_3495001 RAL-181 929 chr3L 3530706 3530717 chr3L 3530782 3530794 4 76 5.0 0.0 2.5 1.1 88 chr3L 3530706 intron Eip63E + chr3L 3530750 intron Eip63E + chr3L 3530794 intron Eip63E + chr3L_4_3530001 chr3L_3530001 RAL-181 930 chr3L 3544395 3544418 chr3L 3544505 3544528 10 109 0.0 4.0 2.0 3.3 133 chr3L 3544395 intron Eip63E + chr3L 3544462 intron Eip63E + chr3L 3544528 intron Eip63E + chr3L_10_3540001 chr3L_3540001 RAL-181 931 chr3L 3565938 3565967 chr3L 3566014 3566039 12 72 3.5 4.5 4.0 2.4 101 chr3L 3565938 intron Eip63E + chr3L 3565988 intron Eip63E + chr3L 3566039 intron Eip63E + chr3L_12_3565001 chr3L_3565001 RAL-181 932 chr3L 3566406 3566431 chr3L 3566481 3566494 11 80 1.0 2.5 1.8 3.9 88 chr3L 3566406 intron Eip63E + chr3L 3566450 intron Eip63E + chr3L 3566494 intron Eip63E + chr3L_11_3565001 chr3L_3565001 RAL-181 933 chr3L 3581765 3581778 chr3L 3581850 3581855 6 83 0.0 4.5 2.2 1.9 90 chr3L 3581765 intron Eip63E + chr3L 3581810 intron Eip63E + chr3L 3581855 intron Eip63E + chr3L_6_3580001 chr3L_3580001 RAL-181 934 chr3L 3601296 3601326 chr3L 3606607 3606635 copia 21 5309 3.0 3.0 3.0 5.2 5339 chr3L 3601296 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606635 intron Eip63E + chr3L_21_3600001 chr3L_3600001 RAL-181 935 chr3L 3619414 3619433 chr3L 3619496 3619527 10 93 4.0 4.5 4.2 1.9 113 chr3L 3619414 intergenic not near genes chr3L 3619470 intergenic not near genes chr3L 3619527 intergenic not near genes chr3L_10_3615001 chr3L_3615001 RAL-181 936 chr3L 3627235 3627261 chr3L 3627340 3627366 5 105 0.5 1.0 0.8 2.8 131 chr3L 3627235 intron dar1 + chr3L 3627300 intron dar1 + chr3L 3627366 intron dar1 + chr3L_5_3625001 chr3L_3625001 RAL-181 937 chr3L 3763759 3763774 chr3L 3763837 3763855 4 77 6.0 0.0 3.0 1.0 96 chr3L 3763759 intron CG32264 - chr3L 3763807 intron CG32264 - chr3L 3763855 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-181 938 chr3L 3782508 3782533 chr3L 3782587 3782612 10 78 2.5 2.0 2.2 3.1 104 chr3L 3782508 intron CG32264 - chr3L 3782560 intron CG32264 - chr3L 3782612 intron CG32264 - chr3L_10_3780001 chr3L_3780001 RAL-181 939 chr3L 3798056 3798074 chr3L 3798137 3798154 7 81 5.0 6.0 5.5 1.1 98 chr3L 3798056 intron CG32264 - chr3L 3798105 intron CG32264 - chr3L 3798154 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-181 940 chr3L 3802944 3802970 chr3L 3803027 3803053 12 80 6.0 6.0 6.0 1.7 109 chr3L 3802944 intron CG32264 - chr3L 3802998 intron CG32264 - chr3L 3803053 intron CG32264 - chr3L_12_3800001 chr3L_3800001 RAL-181 941 chr3L 3889136 3889147 chr3L 3889219 3889229 6 82 4.5 0.5 2.5 1.7 93 chr3L 3889136 intergenic not near genes chr3L 3889182 intergenic not near genes chr3L 3889229 intergenic not near genes chr3L_6_3885001 chr3L_3885001 RAL-181 942 chr3L 3969696 3969719 chr3L 3970719 3970737 5 1020 5.5 6.5 6.0 0.7 1041 chr3L 3969696 intergenic not near genes chr3L 3970216 intergenic not near genes chr3L 3970737 intergenic not near genes chr3L_5_3970001 chr3L_3970001 RAL-181 943 chr3L 4170153 4170166 chr3L 4170231 4170244 4 77 0.5 2.0 1.2 1.8 91 chr3L 4170153 intergenic Ero1L + chr3L 4170198 intergenic Ero1L + chr3L 4170244 intergenic Ero1L + chr3L_4_4170001 chr3L_4170001 RAL-181 944 chr3L 4342414 4342437 chr3L 4342491 4342516 10 77 3.5 3.5 3.5 2.2 102 chr3L 4342414 intron Cip4 - chr3L 4342465 intron Cip4 - chr3L 4342516 intron Cip4 - chr3L_10_4340001 chr3L_4340001 RAL-181 945 chr3L 4364201 4364234 chr3L 4364290 4364316 5 88 1.5 1.5 1.5 2.0 115 chr3L 4364201 intergenic Cip4 -,mRpS6 + chr3L 4364258 intergenic Cip4 -,mRpS6 + chr3L 4364316 intergenic Cip4 -,mRpS6 + chr3L_5_4360001 chr3L_4360001 RAL-181 946 chr3L 4484731 4484751 chr3L 4484809 4484823 7 75 0.5 3.0 1.8 2.5 92 chr3L 4484731 intergenic CG11350 +,CG13722 - chr3L 4484777 intergenic CG13722 -,CG11350 + chr3L 4484823 intergenic CG13722 -,CG11350 + chr3L_7_4480001 chr3L_4480001 RAL-181 947 chr3L 4491398 4491406 chr3L 4491480 4491492 4 88 2.0 0.0 1.0 2.0 94 chr3L 4491398 intergenic CG13722 - chr3L 4491445 intergenic CG13722 - chr3L 4491492 intergenic not near genes chr3L_4_4490001 chr3L_4490001 RAL-181 948 chr3L 4519423 4519439 chr3L 4519500 4519516 10 76 10.5 8.5 9.5 1.0 93 chr3L 4519423 intron Tie - chr3L 4519470 intron Tie - chr3L 4519516 intron Tie - chr3L_10_4515001 chr3L_4515001 RAL-181 949 chr3L 4519443 4519452 chr3L 4519492 4519523 4 68 5.5 4.5 5.0 0.7 80 chr3L 4519443 intron Tie - chr3L 4519483 intron Tie - chr3L 4519523 intron Tie - chr3L_4_4515001 chr3L_4515001 RAL-181 950 chr3L 4901132 4901159 chr3L 4907319 4907340 diver 4 6186 3.0 4.0 3.5 0.9 6208 chr3L 4901132 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907340 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-181 951 chr3L 4907981 4907989 chr3L 4908057 4908065 7 75 1.0 2.5 1.8 2.5 84 chr3L 4907981 intergenic not near genes chr3L 4908023 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_7_4905001 chr3L_4905001 RAL-181 952 chr3L 5030769 5030775 chr3L 5030842 5030851 5 75 11.5 7.0 9.2 0.5 82 chr3L 5030769 intron Con - chr3L 5030810 intron Con - chr3L 5030851 intron Con - chr3L_5_5030001 chr3L_5030001 RAL-181 953 chr3L 5030781 5030799 chr3L 5030841 5030875 12 73 5.5 7.0 6.2 1.7 94 chr3L 5030781 intron Con - chr3L 5030828 intron Con - chr3L 5030875 intron Con - chr3L_12_5030001 chr3L_5030001 RAL-181 954 chr3L 5034158 5034184 chr3L 5043310 5043336 roo 9 9150 4.5 2.0 3.2 2.1 9178 chr3L 5034158 intron Con - chr3L 5038747 intron Con - chr3L 5043336 intron Con - chr3L_9_5035001 chr3L_5035001 RAL-181 955 chr3L 5045458 5045484 chr3L 5050237 5050250 Doc 5 4775 2.5 2.5 2.5 1.4 4792 chr3L 5045458 intron Con - chr3L 5047854 intron Con - chr3L 5050250 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-181 956 chr3L 5091987 5092013 chr3L 5092157 5092181 17 169 4.0 5.5 4.8 2.9 194 chr3L 5091987 intergenic not near genes chr3L 5092084 intergenic not near genes chr3L 5092181 intergenic not near genes chr3L_17_5090001 chr3L_5090001 RAL-181 957 chr3L 5104487 5104502 chr3L 5124621 5124636 4 20134 5.0 3.0 4.0 0.8 20149 chr3L 5104487 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124636 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-181 958 chr3L 5130235 5130263 chr3L 5130598 5130633 13 368 2.0 6.5 4.2 2.5 398 chr3L 5130235 exon CG4597 + chr3L 5130434 intergenic CG4597 + chr3L 5130633 intergenic CG4597 + chr3L_13_5130001 chr3L_5130001 RAL-181 959 chr3L 5130928 5130954 chr3L 5131031 5131056 11 102 6.5 3.0 4.8 1.9 128 chr3L 5130928 intergenic not near genes chr3L 5130992 intergenic not near genes chr3L 5131056 intergenic CG15212 + chr3L_11_5130001 chr3L_5130001 RAL-181 960 chr3L 5449538 5449559 chr3L 5449617 5449637 4 74 0.5 1.0 0.8 2.2 99 chr3L 5449538 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449637 intergenic not near genes chr3L_4_5445001 chr3L_5445001 RAL-181 961 chr3L 5458065 5458084 chr3L 5466665 5466667 Max-element 5 8597 6.0 5.5 5.8 0.7 8602 chr3L 5458065 intergenic not near genes chr3L 5462366 intergenic not near genes chr3L 5466667 intergenic not near genes chr3L_5_5460001 chr3L_5460001 RAL-181 962 chr3L 5482946 5483094 chr3L 5483155 5483179 11 129 2.0 2.0 2.0 3.7 233 chr3L 5482946 exon CG4835 + chr3L 5483062 exon CG4835 + chr3L 5483179 exon CG4835 + chr3L_11_5480001 chr3L_5480001 RAL-181 963 chr3L 5498416 5498434 chr3L 5498493 5498508 6 75 0.5 7.5 4.0 1.2 92 chr3L 5498416 exon blanks - chr3L 5498462 exon blanks - chr3L 5498508 exon blanks - chr3L_6_5495001 chr3L_5495001 RAL-181 964 chr3L 5522001 5522038 chr3L 5522269 5522306 24 266 5.0 6.0 5.5 3.7 305 chr3L 5522001 intron Lkr - chr3L 5522154 intron Lkr - chr3L 5522306 intron Lkr - chr3L_24_5520001 chr3L_5520001 RAL-181 965 chr3L 5526965 5527206 chr3L 5527051 5527304 13 99 3.5 0.0 1.8 4.6 339 chr3L 5526965 intron Lkr - chr3L 5527134 intron Lkr - chr3L 5527304 intron Lkr - chr3L_13_5525001 chr3L_5525001 RAL-181 966 chr3L 5537725 5537750 chr3L 5538063 5538080 jockey 6 339 2.0 2.5 2.2 1.9 355 chr3L 5537725 intergenic not near genes chr3L 5537902 intergenic not near genes chr3L 5538080 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-181 967 chr3L 5902687 5902722 chr3L 5902783 5902820 7 95 2.0 2.0 2.0 2.3 133 chr3L 5902687 intergenic CG32413 -,QC - chr3L 5902754 intergenic CG32413 -,QC - chr3L 5902820 intergenic CG32413 -,QC - chr3L_7_5900001 chr3L_5900001 RAL-181 968 chr3L 5910034 5910057 chr3L 5910275 5910298 pogo 9 238 4.0 3.0 3.5 2.0 264 chr3L 5910034 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910298 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-181 969 chr3L 5926316 5926349 chr3L 5926506 5926539 BS 11 186 6.0 6.0 6.0 1.6 223 chr3L 5926316 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926539 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-181 970 chr3L 6052654 6052669 chr3L 6052736 6052741 5 82 9.5 13.0 11.2 0.4 87 chr3L 6052654 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052741 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-181 971 chr3L 6162354 6162385 chr3L 6162435 6162440 5 75 1.5 1.0 1.2 2.3 86 chr3L 6162354 intergenic CR45744 - chr3L 6162397 intergenic CR45744 - chr3L 6162440 intergenic CR45744 - chr3L_5_6160001 chr3L_6160001 RAL-181 972 chr3L 6220915 6220945 chr3L 6230067 6230097 roo 13 9150 7.5 8.0 7.8 1.5 9182 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-181 973 chr3L 6335010 6335042 chr3L 6335481 6335513 297 7 469 3.5 6.0 4.8 1.2 503 chr3L 6335010 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335513 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-181 974 chr3L 6353376 6353409 chr3L 6353456 6353489 10 78 4.0 6.5 5.2 1.6 113 chr3L 6353376 intergenic not near genes chr3L 6353432 intergenic not near genes chr3L 6353489 intergenic not near genes chr3L_10_6350001 chr3L_6350001 RAL-181 975 chr3L 6399981 6399984 chr3L 6402533 6402536 4 2552 22.5 30.5 26.5 0.1 2555 chr3L 6399981 intergenic not near genes chr3L 6401258 intron CG42747 + chr3L 6402536 intron CG42747 + chr3L_4_6400001 chr3L_6400001 RAL-181 976 chr3L 6399988 6399992 chr3L 6402531 6402544 5 2549 22.0 30.0 26.0 0.2 2556 chr3L 6399988 intergenic not near genes chr3L 6401266 intron CG42747 + chr3L 6402544 intron CG42747 + chr3L_5_6400001 chr3L_6400001 RAL-181 977 chr3L 6399971 6399978 chr3L 6402777 6402784 4 2806 23.5 34.0 28.8 0.1 2813 chr3L 6399971 intergenic not near genes chr3L 6401378 intron CG42747 + chr3L 6402784 intron CG42747 + chr3L_4_6400001 chr3L_6400001 RAL-181 978 chr3L 6504656 6504665 chr3L 6504736 6504752 12 92 3.0 7.5 5.2 1.9 96 chr3L 6504656 intron sfl + chr3L 6504704 intron sfl + chr3L 6504752 intron sfl + chr3L_12_6500001 chr3L_6500001 RAL-181 979 chr3L 6637114 6637138 chr3L 6637194 6637219 8 75 6.5 5.0 5.8 1.2 105 chr3L 6637114 intergenic not near genes chr3L 6637166 intergenic not near genes chr3L 6637219 intergenic not near genes chr3L_8_6635001 chr3L_6635001 RAL-181 980 chr3L 6680294 6680311 chr3L 6680382 6680382 7 95 3.0 9.5 6.2 1.0 88 chr3L 6680294 intergenic not near genes chr3L 6680338 intergenic not near genes chr3L 6680382 intergenic not near genes chr3L_7_6680001 chr3L_6680001 RAL-181 981 chr3L 6764764 6764790 chr3L 6764849 6764874 13 82 6.0 7.5 6.8 1.7 110 chr3L 6764764 intergenic not near genes chr3L 6764819 intergenic not near genes chr3L 6764874 intergenic not near genes chr3L_13_6760001 chr3L_6760001 RAL-181 982 chr3L 6778080 6778092 chr3L 6778199 6778203 6 116 3.5 5.5 4.5 1.1 123 chr3L 6778080 intergenic not near genes chr3L 6778142 intergenic not near genes chr3L 6778203 intergenic not near genes chr3L_6_6775001 chr3L_6775001 RAL-181 983 chr3L 6781123 6781149 chr3L 6783136 6783162 Doc 5 2013 2.5 3.0 2.8 1.3 2039 chr3L 6781123 intergenic not near genes chr3L 6782142 intergenic not near genes chr3L 6783162 intergenic not near genes chr3L_5_6780001 chr3L_6780001 RAL-181 984 chr3L 6855931 6855953 chr3L 6860716 6860738 Doc 6 4783 5.0 5.0 5.0 1.0 4807 chr3L 6855931 intergenic not near genes chr3L 6858334 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-181 985 chr3L 6887523 6887550 chr3L 6895012 6895042 roo 13 7491 1.0 3.0 2.0 4.3 7519 chr3L 6887523 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_13_6890001 chr3L_6890001 RAL-181 986 chr3L 6934338 6934363 chr3L 6934447 6934472 8 110 2.0 3.0 2.5 2.3 134 chr3L 6934338 exon CG14820 + chr3L 6934405 intron CG14820 + chr3L 6934472 intron CG14820 + chr3L_8_6930001 chr3L_6930001 RAL-181 987 chr3L 7042562 7042585 chr3L 7043110 7043133 11 547 3.5 4.5 4.0 2.2 571 chr3L 7042562 intron Mp + chr3L 7042848 intron Mp + chr3L 7043133 intron Mp + chr3L_11_7040001 chr3L_7040001 RAL-181 988 chr3L 7285459 7285475 chr3L 7285537 7285553 16 76 4.0 5.0 4.5 2.9 94 chr3L 7285459 intron unc-13-4A - chr3L 7285506 intron unc-13-4A - chr3L 7285553 intron unc-13-4A - chr3L_16_7285001 chr3L_7285001 RAL-181 989 chr3L 7358307 7358324 chr3L 7359584 7359608 9 1281 31.0 33.0 32.0 0.3 1301 chr3L 7358307 exon pst - chr3L 7358958 exon pst - chr3L 7359608 intron pst - chr3L_9_7355001 chr3L_7355001 RAL-181 990 chr3L 7377335 7377344 chr3L 7380428 7380449 297 5 3100 2.5 7.5 5.0 0.8 3114 chr3L 7377335 intron SMSr - chr3L 7378892 intron SMSr - chr3L 7380449 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-181 991 chr3L 7403631 7403646 chr3L 7403708 7403721 6 76 5.5 6.5 6.0 0.9 90 chr3L 7403631 intron CG8560 - chr3L 7403676 intron CG8560 - chr3L 7403721 intron CG8560 - chr3L_6_7400001 chr3L_7400001 RAL-181 992 chr3L 7444043 7444046 chr3L 7444139 7444143 4 98 4.0 0.0 2.0 1.3 100 chr3L 7444043 intron CG42458 + chr3L 7444093 intron CG42458 + chr3L 7444143 intron CG42458 + chr3L_4_7440001 chr3L_7440001 RAL-181 993 chr3L 7450691 7450718 chr3L 7450774 7450791 5 77 1.0 5.0 3.0 1.2 100 chr3L 7450691 intron CG42458 + chr3L 7450741 intron CG42458 + chr3L 7450791 intron CG42458 + chr3L_5_7450001 chr3L_7450001 RAL-181 994 chr3L 7749471 7749472 chr3L 11777678 11777678 4 4028206 9.5 17.5 13.5 0.3 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-181 995 chr3L 7791415 7791421 chr3L 7791491 7791497 4 76 0.0 0.5 0.2 3.3 82 chr3L 7791415 intron CG32369 - chr3L 7791456 intron CG32369 - chr3L 7791497 intron CG32369 - chr3L_4_7790001 chr3L_7790001 RAL-181 996 chr3L 7793710 7793743 chr3L 7800762 7800781 297 9 7050 2.0 5.0 3.5 2.0 7071 chr3L 7793710 intron CG32369 - chr3L 7797246 intron CG32369 - chr3L 7800781 intron CG32369 - chr3L_9_7795001 chr3L_7795001 RAL-181 997 chr3L 7803134 7803139 chr3L 7803210 7803217 4 76 8.0 1.0 4.5 0.7 83 chr3L 7803134 intron CG32369 - chr3L 7803176 intron CG32369 - chr3L 7803217 intron CG32369 - chr3L_4_7800001 chr3L_7800001 RAL-181 998 chr3L 7886521 7886545 chr3L 7889039 7889063 Stalker4 13 2516 0.0 3.0 1.5 5.2 2542 chr3L 7886521 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_13_7885001 chr3L_7885001 RAL-181 999 chr3L 7985362 7985398 chr3L 7987690 7987710 NOF 16 2326 2.5 4.0 3.2 3.8 2348 chr3L 7985362 intron nmo + chr3L 7986536 intron nmo + chr3L 7987710 intron nmo + chr3L_16_7985001 chr3L_7985001 RAL-181 1000 chr3L 8019702 8019728 chr3L 8024115 8024137 NOF 5 4411 2.0 0.0 1.0 2.5 4435 chr3L 8019702 intron nmo + chr3L 8021920 intron nmo + chr3L 8024137 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-181 1001 chr3L 8208129 8208149 chr3L 8208261 8208281 13 131 6.5 6.0 6.2 1.8 152 chr3L 8208129 intergenic not near genes chr3L 8208205 intergenic not near genes chr3L 8208281 intergenic not near genes chr3L_13_8205001 chr3L_8205001 RAL-181 1002 chr3L 8214734 8214760 chr3L 8214820 8214846 5 85 2.5 4.0 3.2 1.2 112 chr3L 8214734 intergenic not near genes chr3L 8214790 intergenic CG8012 + chr3L 8214846 intergenic CG8012 + chr3L_5_8210001 chr3L_8210001 RAL-181 1003 chr3L 8295794 8295828 chr3L 8295952 8295986 12 156 2.0 6.0 4.0 2.4 192 chr3L 8295794 intergenic CG7201 - chr3L 8295890 intergenic not near genes chr3L 8295986 intergenic not near genes chr3L_12_8295001 chr3L_8295001 RAL-181 1004 chr3L 8299816 8299838 chr3L 8299894 8299920 11 81 1.5 3.0 2.2 3.4 104 chr3L 8299816 5` UTR CG7197 - chr3L 8299868 intergenic CG7197 -,CG13671 + chr3L 8299920 intergenic CG7197 -,CG13671 + chr3L_11_8295001 chr3L_8295001 RAL-181 1005 chr3L 8521337 8521366 chr3L 8524782 8524810 21 3446 55.5 34.5 45.0 0.5 3473 chr3L 8521337 exon se + chr3L 8523074 intron GstO2 - chr3L 8524810 5` UTR GstO1 - chr3L_21_8520001 chr3L_8520001 RAL-181 1006 chr3L 8525883 8525888 chr3L 8525989 8525994 5 106 10.5 6.0 8.2 0.5 111 chr3L 8525883 intron foi + chr3L 8525938 intron foi + chr3L 8525994 intron foi + chr3L_5_8525001 chr3L_8525001 RAL-181 1007 chr3L 8525889 8525915 chr3L 8525986 8526021 15 102 4.0 5.0 4.5 2.7 132 chr3L 8525889 intron foi + chr3L 8525955 intron foi + chr3L 8526021 intron foi + chr3L_15_8525001 chr3L_8525001 RAL-181 1008 chr3L 8579851 8579879 chr3L 8579931 8579946 10 78 4.5 4.5 4.5 1.8 95 chr3L 8579851 intron CG43078 + chr3L 8579898 intron CG43078 + chr3L 8579946 intron CG43078 + chr3L_10_8575001 chr3L_8575001 RAL-181 1009 chr3L 8777972 8778001 chr3L 8778988 8779017 13 1014 2.0 4.5 3.2 3.1 1045 chr3L 8777972 intron Fhos + chr3L 8778494 intron Fhos + chr3L 8779017 intron Fhos + chr3L_13_8775001 chr3L_8775001 RAL-181 1010 chr3L 8791280 8791298 chr3L 8796699 8796704 I-element 7 5416 3.5 0.0 1.8 2.5 5424 chr3L 8791280 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796704 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-181 1011 chr3L 8861530 8861551 chr3L 8861621 8861629 6 88 0.0 4.0 2.0 2.0 99 chr3L 8861530 intron dally + chr3L 8861580 intron dally + chr3L 8861629 intron dally + chr3L_6_8860001 chr3L_8860001 RAL-181 1012 chr3L 9009959 9009970 chr3L 9010063 9010074 4 104 3.0 2.0 2.5 1.1 115 chr3L 9009959 intergenic CG5194 - chr3L 9010016 intergenic CG5194 - chr3L 9010074 intergenic CG5194 - chr3L_4_9010001 chr3L_9010001 RAL-181 1013 chr3L 9076939 9076942 chr3L 9084493 9084499 412 4 7558 8.5 6.0 7.2 0.5 7560 chr3L 9076939 exon Tequila + chr3L 9080719 intron Tequila + chr3L 9084499 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-181 1014 chr3L 9076943 9076960 chr3L 9084490 9084511 412 7 7557 2.5 6.0 4.2 1.3 7568 chr3L 9076943 exon Tequila + chr3L 9080727 intron Tequila + chr3L 9084511 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-181 1015 chr3L 9130556 9130581 chr3L 9134317 9134342 412 14 3761 6.5 5.0 5.8 2.1 3786 chr3L 9130556 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_14_9130001 chr3L_9130001 RAL-181 1016 chr3L 9164706 9164731 chr3L 9166168 9166189 hobo 7 1465 2.0 1.0 1.5 2.8 1483 chr3L 9164706 intron Rdl - chr3L 9165448 intron Rdl - chr3L 9166189 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-181 1017 chr3L 9189378 9189404 chr3L 9189611 9189637 11 229 3.5 1.5 2.5 3.1 259 chr3L 9189378 intergenic not near genes chr3L 9189508 intergenic not near genes chr3L 9189637 intergenic not near genes chr3L_11_9185001 chr3L_9185001 RAL-181 1018 chr3L 9219244 9219274 chr3L 9219913 9219946 jockey 12 666 12.5 4.5 8.5 1.3 702 chr3L 9219244 intergenic not near genes chr3L 9219595 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_12_9215001 chr3L_9215001 RAL-181 1019 chr3L 9221349 9221380 chr3L 9221437 9221456 6 82 1.5 5.0 3.2 1.4 107 chr3L 9221349 intergenic not near genes chr3L 9221402 intergenic not near genes chr3L 9221456 intergenic not near genes chr3L_6_9220001 chr3L_9220001 RAL-181 1020 chr3L 9270617 9270637 chr3L 9278372 9278392 roo 11 7754 4.0 4.0 4.0 2.2 7775 chr3L 9270617 intron GluRIB + chr3L 9274504 intron GluRIB + chr3L 9278392 exon GluRIB + chr3L_11_9270001 chr3L_9270001 RAL-181 1021 chr3L 9270638 9270651 chr3L 9278371 9278396 roo 6 7747 3.0 3.5 3.2 1.4 7758 chr3L 9270638 intron GluRIB + chr3L 9274517 intron GluRIB + chr3L 9278396 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-181 1022 chr3L 9344198 9344224 chr3L 9344276 9344302 11 78 0.0 5.0 2.5 3.1 104 chr3L 9344198 intron PGRP-LC + chr3L 9344250 intron PGRP-LC + chr3L 9344302 intron PGRP-LC + chr3L_11_9340001 chr3L_9340001 RAL-181 1023 chr3L 9348474 9348487 chr3L 9348975 9348988 4 502 4.0 0.0 2.0 1.3 514 chr3L 9348474 intergenic PGRP-LC + chr3L 9348731 intergenic PGRP-LC + chr3L 9348988 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-181 1024 chr3L 9443518 9443540 chr3L 9445300 9445323 S-element 10 1788 0.0 1.5 0.8 5.6 1805 chr3L 9443518 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445323 intron CG33926 + chr3L_10_9440001 chr3L_9440001 RAL-181 1025 chr3L 9501703 9501726 chr3L 9502189 9502211 roo 6 486 3.5 5.0 4.2 1.2 508 chr3L 9501703 intron path - chr3L 9501957 intron path - chr3L 9502211 intron path - chr3L_6_9500001 chr3L_9500001 RAL-181 1026 chr3L 9504940 9504946 chr3L 9505009 9505023 6 76 0.0 3.0 1.5 2.4 83 chr3L 9504940 intron path - chr3L 9504982 intron path - chr3L 9505023 intron path - chr3L_6_9500001 chr3L_9500001 RAL-181 1027 chr3L 9532489 9532515 chr3L 9532585 9532610 9 93 0.5 2.0 1.2 4.1 121 chr3L 9532489 intergenic not near genes chr3L 9532550 intergenic not near genes chr3L 9532610 intergenic not near genes chr3L_9_9530001 chr3L_9530001 RAL-181 1028 chr3L 9533779 9533786 chr3L 9541317 9541346 412 4 7552 5.5 11.0 8.2 0.4 7567 chr3L 9533779 intergenic not near genes chr3L 9537562 intergenic not near genes chr3L 9541346 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-181 1029 chr3L 9571906 9571936 chr3L 9572251 9572284 jockey 4 347 1.5 1.0 1.2 1.8 378 chr3L 9571906 intron CG42673 + chr3L 9572095 intron CG42673 + chr3L 9572284 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-181 1030 chr3L 9575906 9575935 chr3L 9580984 9581013 jockey 13 5076 9.5 6.5 8.0 1.4 5107 chr3L 9575906 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_13_9575001 chr3L_9575001 RAL-181 1031 chr3L 9675847 9675878 chr3L 9675930 9675961 13 81 3.0 10.0 6.5 1.7 114 chr3L 9675847 intron fry - chr3L 9675904 intron fry - chr3L 9675961 intron fry - chr3L_13_9675001 chr3L_9675001 RAL-181 1032 chr3L 9775388 9775398 chr3L 9775748 9775752 4 358 0.5 8.5 4.5 0.7 364 chr3L 9775388 intron CG8177 + chr3L 9775570 intron CG8177 + chr3L 9775752 intron CG8177 + chr3L_4_9775001 chr3L_9775001 RAL-181 1033 chr3L 9918882 9918913 chr3L 9918977 9919000 15 92 2.5 6.5 4.5 2.7 118 chr3L 9918882 intron CG34356 + chr3L 9918941 intron CG34356 + chr3L 9919000 intron CG34356 + chr3L_15_9915001 chr3L_9915001 RAL-181 1034 chr3L 9929677 9929701 chr3L 9938456 9938479 roo 7 8778 2.5 11.5 7.0 0.9 8802 chr3L 9929677 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-181 1035 chr3L 9951211 9951229 chr3L 9951283 9951312 8 83 2.5 5.5 4.0 1.6 101 chr3L 9951211 intron CG34356 + chr3L 9951262 intron CG34356 + chr3L 9951312 intron CG34356 + chr3L_8_9950001 chr3L_9950001 RAL-181 1036 chr3L 10003156 10003181 chr3L 10003253 10003278 10 96 2.0 5.0 3.5 2.2 122 chr3L 10003156 intron dpr6 + chr3L 10003217 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_10_10000001 chr3L_10000001 RAL-181 1037 chr3L 10096231 10096263 chr3L 10096330 10096363 21 98 4.5 7.5 6.0 3.0 132 chr3L 10096231 intron,exon dpr6 +,CG42825 - chr3L 10096297 intron,exon dpr6 +,CG42825 - chr3L 10096363 intron,exon dpr6 +,CG42825 - chr3L_21_10095001 chr3L_10095001 RAL-181 1038 chr3L 10099089 10099114 chr3L 10099174 10099176 9 78 2.0 1.5 1.8 3.2 87 chr3L 10099089 intron dpr6 + chr3L 10099132 intron dpr6 + chr3L 10099176 intron dpr6 + chr3L_9_10095001 chr3L_10095001 RAL-181 1039 chr3L 10107606 10107635 chr3L 10107956 10107984 6 348 4.0 4.0 4.0 1.2 378 chr3L 10107606 intron dpr6 + chr3L 10107795 intron dpr6 + chr3L 10107984 intron dpr6 + chr3L_6_10105001 chr3L_10105001 RAL-181 1040 chr3L 10148405 10148428 chr3L 10148490 10148514 9 84 9.0 7.0 8.0 1.0 109 chr3L 10148405 3` UTR dpr10 - chr3L 10148460 3` UTR dpr10 - chr3L 10148514 3` UTR dpr10 - chr3L_9_10145001 chr3L_10145001 RAL-181 1041 chr3L 10191284 10191318 chr3L 10191395 10191423 11 110 3.5 4.5 4.0 2.2 139 chr3L 10191284 intron ect - chr3L 10191354 intron ect - chr3L 10191423 intron ect - chr3L_11_10190001 chr3L_10190001 RAL-181 1042 chr3L 10214748 10214830 chr3L 10214823 10214924 4 93 0.0 0.0 0.0 4.0 176 chr3L 10214748 intergenic not near genes chr3L 10214836 intergenic not near genes chr3L 10214924 intergenic not near genes chr3L_4_10210001 chr3L_10210001 RAL-181 1043 chr3L 10219780 10219807 chr3L 10220290 10220319 17 511 8.0 4.5 6.2 2.4 539 chr3L 10219780 exon CG32055 - chr3L 10220050 exon CG32055 - chr3L 10220319 intergenic CG32055 -,scramb1 - chr3L_17_10220001 chr3L_10220001 RAL-181 1044 chr3L 10222740 10222775 chr3L 10222820 10222855 10 80 1.5 5.0 3.2 2.4 115 chr3L 10222740 intron scramb1 - chr3L 10222798 intron scramb1 - chr3L 10222855 intron scramb1 - chr3L_10_10220001 chr3L_10220001 RAL-181 1045 chr3L 10272501 10272533 chr3L 10272608 10272640 10 104 2.0 6.5 4.2 1.9 139 chr3L 10272501 intergenic not near genes chr3L 10272570 intergenic not near genes chr3L 10272640 intergenic not near genes chr3L_10_10270001 chr3L_10270001 RAL-181 1046 chr3L 10300052 10300072 chr3L 10300144 10300160 6 90 3.0 1.5 2.2 1.9 108 chr3L 10300052 intergenic not near genes chr3L 10300106 intergenic not near genes chr3L 10300160 intergenic not near genes chr3L_6_10300001 chr3L_10300001 RAL-181 1047 chr3L 10308737 10308775 chr3L 10308814 10308852 23 75 5.0 7.5 6.2 3.2 115 chr3L 10308737 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308852 intergenic not near genes chr3L_23_10305001 chr3L_10305001 RAL-181 1048 chr3L 10314491 10314506 chr3L 10314567 10314586 4 79 1.5 3.0 2.2 1.2 95 chr3L 10314491 intergenic not near genes chr3L 10314538 intergenic not near genes chr3L 10314586 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-181 1049 chr3L 10325899 10325933 chr3L 10329306 10329334 13 3403 24.5 33.5 29.0 0.4 3435 chr3L 10325899 intergenic not near genes chr3L 10327616 intergenic CR45244 + chr3L 10329334 intergenic not near genes chr3L_13_10325001 chr3L_10325001 RAL-181 1050 chr3L 10351254 10351261 chr3L 10351415 10351420 6 160 60.5 56.0 58.2 0.1 166 chr3L 10351254 intron CR44327 + chr3L 10351337 intron CR44327 + chr3L 10351420 intron CR44327 + chr3L_6_10350001 chr3L_10350001 RAL-181 1051 chr3L 10386388 10386403 chr3L 10386465 10386480 5 74 3.5 5.0 4.2 1.0 92 chr3L 10386388 intergenic CR45245 + chr3L 10386434 intergenic CR45245 + chr3L 10386480 5` UTR CR45245 + chr3L_5_10385001 chr3L_10385001 RAL-181 1052 chr3L 10395553 10395566 chr3L 10395694 10395719 5 148 5.0 5.0 5.0 0.8 166 chr3L 10395553 intergenic not near genes chr3L 10395636 intergenic not near genes chr3L 10395719 intergenic not near genes chr3L_5_10395001 chr3L_10395001 RAL-181 1053 chr3L 10414942 10414978 chr3L 10417313 10417350 Doc 18 2371 3.0 2.0 2.5 5.1 2408 chr3L 10414942 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417350 intergenic not near genes chr3L_18_10415001 chr3L_10415001 RAL-181 1054 chr3L 10417569 10417606 chr3L 10417646 10417683 18 75 4.0 4.5 4.2 3.5 114 chr3L 10417569 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417683 intergenic not near genes chr3L_18_10415001 chr3L_10415001 RAL-181 1055 chr3L 10538691 10538710 chr3L 10538770 10538789 4 79 1.5 0.5 1.0 2.0 98 chr3L 10538691 intron A2bp1 + chr3L 10538740 intron A2bp1 + chr3L 10538789 intron A2bp1 + chr3L_4_10535001 chr3L_10535001 RAL-181 1056 chr3L 10614124 10614147 chr3L 10615120 10615125 6 993 2.5 3.5 3.0 1.5 1001 chr3L 10614124 intergenic not near genes chr3L 10614624 intergenic not near genes chr3L 10615125 intergenic not near genes chr3L_6_10610001 chr3L_10610001 RAL-181 1057 chr3L 10621848 10621863 chr3L 10621935 10621950 4 87 2.5 3.5 3.0 1.0 102 chr3L 10621848 intergenic not near genes chr3L 10621899 intergenic not near genes chr3L 10621950 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-181 1058 chr3L 10658079 10658209 chr3L 10658156 10658336 9 99 1.0 1.0 1.0 4.5 257 chr3L 10658079 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-181 1059 chr3L 10729803 10729832 chr3L 10729881 10729909 4 77 6.5 0.0 3.2 1.0 106 chr3L 10729803 intergenic not near genes chr3L 10729856 intergenic not near genes chr3L 10729909 intergenic not near genes chr3L_4_10725001 chr3L_10725001 RAL-181 1060 chr3L 10762830 10762848 chr3L 10762913 10762932 10 81 10.0 3.0 6.5 1.3 102 chr3L 10762830 intergenic not near genes chr3L 10762881 intergenic not near genes chr3L 10762932 intergenic not near genes chr3L_10_10760001 chr3L_10760001 RAL-181 1061 chr3L 10889229 10889260 chr3L 10889309 10889339 14 76 3.5 8.0 5.8 2.1 110 chr3L 10889229 intergenic not near genes chr3L 10889284 intergenic not near genes chr3L 10889339 intergenic not near genes chr3L_14_10885001 chr3L_10885001 RAL-181 1062 chr3L 10956451 10956469 chr3L 10956567 10956587 4 117 1.0 4.0 2.5 1.1 136 chr3L 10956451 intergenic not near genes chr3L 10956519 intergenic not near genes chr3L 10956587 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-181 1063 chr3L 11087063 11087089 chr3L 11088851 11088875 S-element 7 1787 2.5 4.0 3.2 1.7 1812 chr3L 11087063 intron JIL-1 - chr3L 11087969 intron JIL-1 - chr3L 11088875 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-181 1064 chr3L 11105296 11105329 chr3L 11107007 11107038 X-element 8 1710 3.5 5.5 4.5 1.5 1742 chr3L 11105296 intergenic not near genes chr3L 11106167 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_8_11105001 chr3L_11105001 RAL-181 1065 chr3L 11245094 11245105 chr3L 11245185 11245196 6 92 6.5 11.5 9.0 0.6 102 chr3L 11245094 intergenic not near genes chr3L 11245145 intergenic not near genes chr3L 11245196 intergenic not near genes chr3L_6_11245001 chr3L_11245001 RAL-181 1066 chr3L 11245107 11245121 chr3L 11245178 11245213 13 90 3.0 10.0 6.5 1.7 106 chr3L 11245107 intergenic not near genes chr3L 11245160 intergenic not near genes chr3L 11245213 intergenic not near genes chr3L_13_11245001 chr3L_11245001 RAL-181 1067 chr3L 11249863 11249892 chr3L 11249943 11249975 5 82 1.0 0.0 0.5 3.3 112 chr3L 11249863 5` UTR CR44717 + chr3L 11249919 5` UTR CR44717 + chr3L 11249975 5` UTR CR44717 + chr3L_5_11245001 chr3L_11245001 RAL-181 1068 chr3L 11290627 11290656 chr3L 11290950 11290965 12 320 2.5 3.5 3.0 3.0 338 chr3L 11290627 intron CG6175 - chr3L 11290796 intron CG6175 - chr3L 11290965 intron CG6175 - chr3L_12_11290001 chr3L_11290001 RAL-181 1069 chr3L 11301687 11301712 chr3L 11301810 11301831 8 119 3.0 6.0 4.5 1.5 144 chr3L 11301687 intergenic not near genes chr3L 11301759 intergenic not near genes chr3L 11301831 intergenic not near genes chr3L_8_11300001 chr3L_11300001 RAL-181 1070 chr3L 11329706 11329728 chr3L 11332894 11332907 jockey 5 3183 5.5 7.0 6.2 0.7 3201 chr3L 11329706 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332907 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-181 1071 chr3L 11358761 11358777 chr3L 11358828 11358845 5 76 0.0 3.5 1.8 1.8 84 chr3L 11358761 intergenic not near genes chr3L 11358803 intergenic not near genes chr3L 11358845 intergenic not near genes chr3L_5_11355001 chr3L_11355001 RAL-181 1072 chr3L 11404824 11404842 chr3L 11404939 11404940 5 109 3.0 1.0 2.0 1.7 116 chr3L 11404824 intergenic not near genes chr3L 11404882 intergenic not near genes chr3L 11404940 intergenic not near genes chr3L_5_11400001 chr3L_11400001 RAL-181 1073 chr3L 11453068 11453098 chr3L 11453152 11453182 19 83 5.5 5.5 5.5 2.9 114 chr3L 11453068 intergenic not near genes chr3L 11453125 intergenic not near genes chr3L 11453182 intergenic not near genes chr3L_19_11450001 chr3L_11450001 RAL-181 1074 chr3L 11587944 11587952 chr3L 11588015 11588028 5 72 1.5 10.5 6.0 0.7 84 chr3L 11587944 intergenic rt - chr3L 11587986 intergenic rt - chr3L 11588028 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-181 1075 chr3L 11588736 11588754 chr3L 11588888 11588890 9 150 1.0 4.5 2.8 2.4 154 chr3L 11588736 intergenic not near genes chr3L 11588813 intergenic not near genes chr3L 11588890 intergenic not near genes chr3L_9_11585001 chr3L_11585001 RAL-181 1076 chr3L 11744015 11744043 chr3L 11744123 11744146 14 107 6.5 0.0 3.2 3.3 131 chr3L 11744015 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_14_11740001 chr3L_11740001 RAL-181 1077 chr3L 11757916 11757931 chr3L 11758013 11758028 5 97 6.0 0.0 3.0 1.2 112 chr3L 11757916 intron CG6024 - chr3L 11757972 intron CG6024 - chr3L 11758028 intron CG6024 - chr3L_5_11755001 chr3L_11755001 RAL-181 1078 chr3L 9313026 9313027 chr3L 11777678 11777678 5 2464651 17.0 17.5 17.2 0.3 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_10545001 chr3L_10545001 RAL-181 1079 chr3L 11811455 11811489 chr3L 11811533 11811565 10 78 3.5 4.0 3.8 2.1 110 chr3L 11811455 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811565 exon CG42255 - chr3L_10_11810001 chr3L_11810001 RAL-181 1080 chr3L 11826756 11826766 chr3L 11826856 11826866 4 99 2.0 4.5 3.2 1.0 110 chr3L 11826756 3` UTR CycA - chr3L 11826811 3` UTR CycA - chr3L 11826866 3` UTR CycA - chr3L_4_11825001 chr3L_11825001 RAL-181 1081 chr3L 11833741 11833746 chr3L 11833839 11833850 4 102 3.5 1.0 2.2 1.2 109 chr3L 11833741 intergenic CycA - chr3L 11833796 intergenic CycA - chr3L 11833850 intergenic CycA - chr3L_4_11830001 chr3L_11830001 RAL-181 1082 chr3L 11864554 11864583 chr3L 11865849 11865878 pogo 9 1294 3.5 6.5 5.0 1.5 1324 chr3L 11864554 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_9_11865001 chr3L_11865001 RAL-181 1083 chr3L 11943497 11943521 chr3L 11943598 11943620 6 100 3.0 3.0 3.0 1.5 123 chr3L 11943497 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943620 intergenic CG5883 -,Rpt4R + chr3L_6_11940001 chr3L_11940001 RAL-181 1084 chr3L 12013915 12013938 chr3L 12014006 12014017 14 89 4.0 3.5 3.8 2.9 102 chr3L 12013915 intron rols - chr3L 12013966 intron rols - chr3L 12014017 intron rols - chr3L_14_12010001 chr3L_12010001 RAL-181 1085 chr3L 12052722 12052734 chr3L 12052799 12052823 4 83 4.0 5.5 4.8 0.7 101 chr3L 12052722 intron rols - chr3L 12052772 intron rols - chr3L 12052823 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-181 1086 chr3L 12075424 12075448 chr3L 12075513 12075537 11 89 3.0 0.0 1.5 4.4 113 chr3L 12075424 intron Sema-5c - chr3L 12075480 intron Sema-5c - chr3L 12075537 intron Sema-5c - chr3L_11_12075001 chr3L_12075001 RAL-181 1087 chr3L 12089085 12089112 chr3L 12089165 12089186 11 79 3.0 2.0 2.5 3.1 101 chr3L 12089085 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089186 3` UTR CG17154 + chr3L_11_12085001 chr3L_12085001 RAL-181 1088 chr3L 12114501 12114528 chr3L 12115265 12115290 16 764 4.5 5.0 4.8 2.8 789 chr3L 12114501 intergenic not near genes chr3L 12114896 intergenic not near genes chr3L 12115290 intergenic not near genes chr3L_16_12110001 chr3L_12110001 RAL-181 1089 chr3L 12170811 12170821 chr3L 12170893 12170903 4 82 2.0 2.5 2.2 1.2 92 chr3L 12170811 intron Rh7 - chr3L 12170857 intron Rh7 - chr3L 12170903 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-181 1090 chr3L 12172876 12172912 chr3L 12173135 12173171 9 255 2.0 2.0 2.0 3.0 295 chr3L 12172876 intron Rh7 - chr3L 12173024 intron Rh7 - chr3L 12173171 intron Rh7 - chr3L_9_12170001 chr3L_12170001 RAL-181 1091 chr3L 12304090 12304113 chr3L 12304166 12304187 8 75 7.0 7.5 7.2 1.0 97 chr3L 12304090 intergenic not near genes chr3L 12304138 intergenic not near genes chr3L 12304187 intergenic not near genes chr3L_8_12300001 chr3L_12300001 RAL-181 1092 chr3L 12312492 12312509 chr3L 12312562 12312580 9 73 5.5 5.5 5.5 1.4 88 chr3L 12312492 intergenic not near genes chr3L 12312536 intergenic not near genes chr3L 12312580 intergenic not near genes chr3L_9_12310001 chr3L_12310001 RAL-181 1093 chr3L 12335391 12335409 chr3L 12335467 12335473 8 73 7.0 7.5 7.2 1.0 82 chr3L 12335391 exon CG32105 + chr3L 12335432 3` UTR CG32105 + chr3L 12335473 3` UTR CG32105 + chr3L_8_12335001 chr3L_12335001 RAL-181 1094 chr3L 12406509 12406531 chr3L 12406740 12406762 10 229 1.0 5.0 3.0 2.5 253 chr3L 12406509 intron CG32103 - chr3L 12406636 intron CG32103 - chr3L 12406762 intron CG32103 - chr3L_10_12405001 chr3L_12405001 RAL-181 1095 chr3L 12413038 12413052 chr3L 12413121 12413133 7 80 3.0 5.0 4.0 1.4 95 chr3L 12413038 intron CG32103 - chr3L 12413086 intron CG32103 - chr3L 12413133 intron CG32103 - chr3L_7_12410001 chr3L_12410001 RAL-181 1096 chr3L 12476307 12476322 chr3L 12476376 12476395 7 74 1.0 6.0 3.5 1.6 88 chr3L 12476307 intron CG10663 - chr3L 12476351 intron CG10663 - chr3L 12476395 intron CG10663 - chr3L_7_12475001 chr3L_12475001 RAL-181 1097 chr3L 12506984 12507004 chr3L 12507060 12507082 10 77 1.5 8.0 4.8 1.7 98 chr3L 12506984 intron CG10654 - chr3L 12507033 intron CG10654 - chr3L 12507082 intron CG10654 - chr3L_10_12505001 chr3L_12505001 RAL-181 1098 chr3L 12578045 12578057 chr3L 12578133 12578145 6 88 2.5 1.0 1.8 2.1 100 chr3L 12578045 intergenic not near genes chr3L 12578095 intergenic not near genes chr3L 12578145 intergenic not near genes chr3L_6_12575001 chr3L_12575001 RAL-181 1099 chr3L 12656132 12656151 chr3L 12656195 12656221 12 66 4.0 7.5 5.8 1.8 89 chr3L 12656132 intergenic not near genes chr3L 12656176 intergenic not near genes chr3L 12656221 intergenic not near genes chr3L_12_12655001 chr3L_12655001 RAL-181 1100 chr3L 12801981 12802006 chr3L 12802054 12802080 5 74 3.5 2.5 3.0 1.2 99 chr3L 12801981 intron Atg1 - chr3L 12802030 intron Atg1 - chr3L 12802080 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-181 1101 chr3L 12874928 12874960 chr3L 12877220 12877250 jockey 9 2291 1.5 1.0 1.2 4.1 2322 chr3L 12874928 intergenic not near genes chr3L 12876089 intergenic not near genes chr3L 12877250 intergenic not near genes chr3L_9_12875001 chr3L_12875001 RAL-181 1102 chr3L 12894803 12894817 chr3L 12894881 12894894 6 76 12.0 15.5 13.8 0.4 91 chr3L 12894803 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-181 1103 chr3L 12919282 12919312 chr3L 12924748 12924751 Rt1c 10 5464 5.5 3.5 4.5 1.8 5469 chr3L 12919282 intergenic not near genes chr3L 12922016 intergenic not near genes chr3L 12924751 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-181 1104 chr3L 12957797 12957816 chr3L 12962279 12962298 copia 12 4481 2.0 5.5 3.8 2.5 4501 chr3L 12957797 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_12_12960001 chr3L_12960001 RAL-181 1105 chr3L 12966981 12967010 chr3L 12967605 12967640 19 629 3.5 5.0 4.2 3.7 659 chr3L 12966981 exon Or69a - chr3L 12967310 exon Or69a - chr3L 12967640 exon Or69a - chr3L_19_12965001 chr3L_12965001 RAL-181 1106 chr3L 12978764 12978784 chr3L 12978843 12978848 7 76 6.0 0.0 3.0 1.8 84 chr3L 12978764 intergenic not near genes chr3L 12978806 intergenic not near genes chr3L 12978848 intergenic not near genes chr3L_7_12975001 chr3L_12975001 RAL-181 1107 chr3L 13085062 13085076 chr3L 13085141 13085155 5 79 3.0 5.5 4.2 1.0 93 chr3L 13085062 intergenic not near genes chr3L 13085108 intergenic not near genes chr3L 13085155 intergenic not near genes chr3L_5_13085001 chr3L_13085001 RAL-181 1108 chr3L 13095815 13095839 chr3L 13095903 13095927 4 88 6.0 0.0 3.0 1.0 112 chr3L 13095815 intergenic not near genes chr3L 13095871 intergenic not near genes chr3L 13095927 intergenic not near genes chr3L_4_13095001 chr3L_13095001 RAL-181 1109 chr3L 13142156 13142176 chr3L 13142267 13142289 5 113 1.0 5.5 3.2 1.2 133 chr3L 13142156 intergenic not near genes chr3L 13142222 intergenic not near genes chr3L 13142289 intergenic not near genes chr3L_5_13140001 chr3L_13140001 RAL-181 1110 chr3L 13205241 13205272 chr3L 13205327 13205358 14 84 5.0 7.0 6.0 2.0 117 chr3L 13205241 intergenic not near genes chr3L 13205300 intergenic not near genes chr3L 13205358 intergenic not near genes chr3L_14_13205001 chr3L_13205001 RAL-181 1111 chr3L 13301256 13301276 chr3L 13301337 13301354 4 80 0.0 0.0 0.0 4.0 98 chr3L 13301256 intergenic SP + chr3L 13301305 intergenic SP + chr3L 13301354 intergenic SP + chr3L_4_13300001 chr3L_13300001 RAL-181 1112 chr3L 13431677 13431702 chr3L 13431755 13431780 13 76 4.0 1.0 2.5 3.7 103 chr3L 13431677 intron CG10713 - chr3L 13431728 intron CG10713 - chr3L 13431780 intron CG10713 - chr3L_13_13430001 chr3L_13430001 RAL-181 1113 chr3L 13525156 13525187 chr3L 13532952 13532980 roo 12 7792 6.5 6.5 6.5 1.6 7824 chr3L 13525156 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532980 intergenic not near genes chr3L_12_13525001 chr3L_13525001 RAL-181 1114 chr3L 13705517 13705544 chr3L 13705607 13705632 6 86 2.0 3.0 2.5 1.7 115 chr3L 13705517 intron bru-3 - chr3L 13705574 intron bru-3 - chr3L 13705632 intron bru-3 - chr3L_6_13705001 chr3L_13705001 RAL-181 1115 chr3L 13741557 13741592 chr3L 13741636 13741655 11 73 2.0 3.5 2.8 2.9 98 chr3L 13741557 intron bru-3 - chr3L 13741606 intron bru-3 - chr3L 13741655 intron bru-3 - chr3L_11_13740001 chr3L_13740001 RAL-181 1116 chr3L 13754427 13754451 chr3L 13754504 13754528 14 76 5.0 3.0 4.0 2.8 101 chr3L 13754427 intron bru-3 - chr3L 13754478 intron bru-3 - chr3L 13754528 intron bru-3 - chr3L_14_13750001 chr3L_13750001 RAL-181 1117 chr3L 13804557 13804571 chr3L 13822843 13822857 roo 4 18286 4.5 10.5 7.5 0.5 18300 chr3L 13804557 intergenic not near genes chr3L 13813707 intergenic not near genes chr3L 13822857 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-181 1118 chr3L 13898224 13898250 chr3L 13898307 13898334 8 82 2.5 2.0 2.2 2.5 110 chr3L 13898224 intron dysc - chr3L 13898279 intron dysc - chr3L 13898334 intron dysc - chr3L_8_13895001 chr3L_13895001 RAL-181 1119 chr3L 13901571 13901597 chr3L 13901648 13901674 11 74 1.5 3.0 2.2 3.4 103 chr3L 13901571 intron dysc - chr3L 13901622 intron dysc - chr3L 13901674 intron dysc - chr3L_11_13900001 chr3L_13900001 RAL-181 1120 chr3L 14076291 14076319 chr3L 14076369 14076394 8 74 0.0 5.5 2.8 2.1 103 chr3L 14076291 intron btl + chr3L 14076342 intron btl + chr3L 14076394 intron btl + chr3L_8_14075001 chr3L_14075001 RAL-181 1121 chr3L 14099426 14099452 chr3L 14099516 14099519 12 87 1.0 6.5 3.8 2.5 93 chr3L 14099426 intergenic not near genes chr3L 14099472 intergenic not near genes chr3L 14099519 intergenic not near genes chr3L_12_14095001 chr3L_14095001 RAL-181 1122 chr3L 14175355 14175378 chr3L 14175503 14175513 4 145 1.5 0.5 1.0 2.0 158 chr3L 14175355 intergenic D - chr3L 14175434 intergenic D - chr3L 14175513 intergenic D - chr3L_4_14175001 chr3L_14175001 RAL-181 1123 chr3L 14245573 14245591 chr3L 14245663 14245685 1360 11 92 3.5 2.5 3.0 2.8 112 chr3L 14245573 3` UTR CR44561 - chr3L 14245629 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_11_14245001 chr3L_14245001 RAL-181 1124 chr3L 14282595 14282603 chr3L 14282668 14282680 4 77 8.5 7.0 7.8 0.5 85 chr3L 14282595 intron fz + chr3L 14282638 intron fz + chr3L 14282680 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-181 1125 chr3L 14286666 14286675 chr3L 14286738 14286754 4 77 2.5 3.5 3.0 1.0 88 chr3L 14286666 intron fz + chr3L 14286710 intron fz + chr3L 14286754 intron fz + chr3L_4_14285001 chr3L_14285001 RAL-181 1126 chr3L 14295985 14296016 chr3L 14296471 14296499 roo 15 484 5.0 5.0 5.0 2.5 514 chr3L 14295985 intron fz + chr3L 14296242 intron fz + chr3L 14296499 intron fz + chr3L_15_14295001 chr3L_14295001 RAL-181 1127 chr3L 14312026 14312045 chr3L 14316840 14316848 X-element 4 4811 3.5 3.5 3.5 0.9 4822 chr3L 14312026 exon fz + chr3L 14314437 intron fz + chr3L 14316848 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-181 1128 chr3L 14326968 14326998 chr3L 14327099 14327130 10 134 1.5 5.5 3.5 2.2 162 chr3L 14326968 intron fz + chr3L 14327049 intron fz + chr3L 14327130 intron fz + chr3L_10_14325001 chr3L_14325001 RAL-181 1129 chr3L 14338297 14338327 chr3L 14338393 14338423 6 96 1.5 1.5 1.5 2.4 126 chr3L 14338297 intron fz + chr3L 14338360 intron fz + chr3L 14338423 intron fz + chr3L_6_14335001 chr3L_14335001 RAL-181 1130 chr3L 14356522 14356552 chr3L 14356599 14356631 16 77 5.5 4.0 4.8 2.8 109 chr3L 14356522 intron fz + chr3L 14356576 intron fz + chr3L 14356631 intron fz + chr3L_16_14355001 chr3L_14355001 RAL-181 1131 chr3L 14403061 14403083 chr3L 14403211 14403233 4 150 0.0 0.0 0.0 4.0 172 chr3L 14403061 3` UTR stwl - chr3L 14403147 3` UTR stwl - chr3L 14403233 3` UTR stwl - chr3L_4_14400001 chr3L_14400001 RAL-181 1132 chr3L 14411876 14411890 chr3L 14411952 14411954 5 75 4.0 3.0 3.5 1.1 78 chr3L 14411876 intron CG3919 + chr3L 14411915 intron CG3919 + chr3L 14411954 intron CG3919 + chr3L_5_14410001 chr3L_14410001 RAL-181 1133 chr3L 14453697 14453726 chr3L 14453779 14453813 6 85 0.0 2.0 1.0 3.0 116 chr3L 14453697 intron bbg - chr3L 14453755 intron bbg - chr3L 14453813 intron bbg - chr3L_6_14450001 chr3L_14450001 RAL-181 1134 chr3L 14486137 14486171 chr3L 14486214 14486248 6 77 0.0 6.0 3.0 1.5 111 chr3L 14486137 intron bbg - chr3L 14486192 intron bbg - chr3L 14486248 intron bbg - chr3L_6_14485001 chr3L_14485001 RAL-181 1135 chr3L 14487618 14487624 chr3L 14487694 14487699 5 75 11.5 0.0 5.8 0.7 81 chr3L 14487618 intron bbg - chr3L 14487658 intron bbg - chr3L 14487699 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-181 1136 chr3L 14693540 14693574 chr3L 14693639 14693655 18 96 2.5 3.0 2.8 4.7 115 chr3L 14693540 intron ome + chr3L 14693598 intron ome + chr3L 14693655 intron ome + chr3L_18_14690001 chr3L_14690001 RAL-181 1137 chr3L 14721198 14721209 chr3L 14723023 14723028 Rt1c 7 1837 6.5 5.0 5.8 1.0 1830 chr3L 14721198 intron ome + chr3L 14722113 intron ome + chr3L 14723028 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-181 1138 chr3L 14725613 14725625 chr3L 14728601 14728619 Doc 5 2993 4.5 7.0 5.8 0.7 3006 chr3L 14725613 intron ome + chr3L 14727116 intron ome + chr3L 14728619 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-181 1139 chr3L 14930142 14930170 chr3L 14930229 14930257 15 86 3.0 5.5 4.2 2.9 115 chr3L 14930142 intron DCX-EMAP + chr3L 14930200 intron DCX-EMAP + chr3L 14930257 intron DCX-EMAP + chr3L_15_14930001 chr3L_14930001 RAL-181 1140 chr3L 14930853 14930889 chr3L 14931265 14931302 8 412 0.0 1.0 0.5 5.3 449 chr3L 14930853 intron DCX-EMAP + chr3L 14931078 intron DCX-EMAP + chr3L 14931302 intron DCX-EMAP + chr3L_8_14930001 chr3L_14930001 RAL-181 1141 chr3L 15053430 15053449 chr3L 15053769 15053788 12 339 1.0 9.0 5.0 2.0 358 chr3L 15053430 intron Sytbeta - chr3L 15053609 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053788 intron,3` UTR Sytbeta -,CG18649 - chr3L_12_15050001 chr3L_15050001 RAL-181 1142 chr3L 15069797 15069813 chr3L 15069935 15069953 5 141 20.0 9.0 14.5 0.3 156 chr3L 15069797 exon cp309 - chr3L 15069875 intron cp309 - chr3L 15069953 exon cp309 - chr3L_5_15065001 chr3L_15065001 RAL-181 1143 chr3L 15085049 15085085 chr3L 15086214 15086243 1360 8 1160 1.0 3.5 2.2 2.5 1194 chr3L 15085049 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086243 intron cp309 - chr3L_8_15085001 chr3L_15085001 RAL-181 1144 chr3L 15163629 15163644 chr3L 15163717 15163733 10 90 4.0 4.0 4.0 2.0 104 chr3L 15163629 intergenic CG7011 - chr3L 15163681 intergenic CG7011 - chr3L 15163733 intergenic CG7011 - chr3L_10_15160001 chr3L_15160001 RAL-181 1145 chr3L 15231397 15231423 chr3L 15231481 15231498 16 88 1.0 2.5 1.8 5.7 101 chr3L 15231397 intergenic not near genes chr3L 15231448 intergenic not near genes chr3L 15231498 intergenic not near genes chr3L_16_15230001 chr3L_15230001 RAL-181 1146 chr3L 15282717 15282741 chr3L 15282846 15282871 9 129 3.5 3.5 3.5 2.0 154 chr3L 15282717 intergenic not near genes chr3L 15282794 intergenic not near genes chr3L 15282871 intergenic not near genes chr3L_9_15280001 chr3L_15280001 RAL-181 1147 chr3L 15284571 15284597 chr3L 15284647 15284676 8 77 11.0 5.5 8.2 0.9 105 chr3L 15284571 intergenic not near genes chr3L 15284624 intergenic not near genes chr3L 15284676 intergenic not near genes chr3L_8_15280001 chr3L_15280001 RAL-181 1148 chr3L 15327224 15327252 chr3L 15327293 15327314 9 72 1.5 3.0 2.2 2.8 90 chr3L 15327224 intergenic not near genes chr3L 15327269 intergenic not near genes chr3L 15327314 intergenic not near genes chr3L_9_15325001 chr3L_15325001 RAL-181 1149 chr3L 15333143 15333170 chr3L 15333219 15333252 4 80 0.5 6.0 3.2 1.0 109 chr3L 15333143 intergenic CR43247 + chr3L 15333198 intergenic CR43247 + chr3L 15333252 intergenic CR43247 + chr3L_4_15330001 chr3L_15330001 RAL-181 1150 chr3L 15348116 15348140 chr3L 15348274 15348284 7 155 4.0 5.0 4.5 1.3 168 chr3L 15348116 intergenic not near genes chr3L 15348200 intergenic not near genes chr3L 15348284 intergenic not near genes chr3L_7_15345001 chr3L_15345001 RAL-181 1151 chr3L 15406020 15406052 chr3L 15406102 15406135 7 82 3.0 3.5 3.2 1.7 115 chr3L 15406020 intergenic not near genes chr3L 15406078 intergenic not near genes chr3L 15406135 intergenic not near genes chr3L_7_15405001 chr3L_15405001 RAL-181 1152 chr3L 15423769 15423780 chr3L 15426603 15426623 opus 5 2839 3.0 3.5 3.2 1.2 2854 chr3L 15423769 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426623 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-181 1153 chr3L 15444651 15444654 chr3L 15444745 15444748 4 94 15.0 7.0 11.0 0.3 97 chr3L 15444651 intergenic not near genes chr3L 15444700 intergenic not near genes chr3L 15444748 intergenic not near genes chr3L_4_15440001 chr3L_15440001 RAL-181 1154 chr3L 15444655 15444684 chr3L 15444744 15444777 14 90 6.0 6.5 6.2 1.9 122 chr3L 15444655 intergenic not near genes chr3L 15444716 intergenic not near genes chr3L 15444777 intergenic not near genes chr3L_14_15440001 chr3L_15440001 RAL-181 1155 chr3L 15463462 15463493 chr3L 15463552 15463583 11 86 3.0 5.5 4.2 2.1 121 chr3L 15463462 intergenic not near genes chr3L 15463522 intergenic not near genes chr3L 15463583 intergenic not near genes chr3L_11_15460001 chr3L_15460001 RAL-181 1156 chr3L 15466051 15466133 chr3L 15466123 15466229 6 89 0.0 0.0 0.0 6.0 178 chr3L 15466051 intergenic not near genes chr3L 15466140 intergenic not near genes chr3L 15466229 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-181 1157 chr3L 15659521 15659540 chr3L 15659604 15659623 4 83 4.5 1.5 3.0 1.0 102 chr3L 15659521 intergenic Eig71Eh -,Eig71Ei + chr3L 15659572 intergenic Eig71Eh -,Eig71Ei + chr3L 15659623 intergenic Eig71Ei +,Eig71Eh - chr3L_4_15655001 chr3L_15655001 RAL-181 1158 chr3L 15791745 15791764 chr3L 15791898 15791917 10 153 7.0 3.0 5.0 1.7 172 chr3L 15791745 intergenic not near genes chr3L 15791831 intergenic not near genes chr3L 15791917 intergenic not near genes chr3L_10_15790001 chr3L_15790001 RAL-181 1159 chr3L 15809168 15809196 chr3L 15809250 15809280 9 82 1.5 5.0 3.2 2.1 112 chr3L 15809168 intergenic CG6244 +,CG13445 + chr3L 15809224 intergenic CG13445 +,CG6244 + chr3L 15809280 intergenic CG13445 +,CG6244 + chr3L_9_15805001 chr3L_15805001 RAL-181 1160 chr3L 15814239 15814264 chr3L 15814410 15814438 9 172 28.0 30.0 29.0 0.3 199 chr3L 15814239 intron fwe - chr3L 15814338 intron fwe - chr3L 15814438 intron fwe - chr3L_9_15810001 chr3L_15810001 RAL-181 1161 chr3L 15871593 15871616 chr3L 15871677 15871700 8 82 3.0 7.5 5.2 1.3 107 chr3L 15871593 intron pHCl - chr3L 15871646 intron pHCl - chr3L 15871700 intron pHCl - chr3L_8_15870001 chr3L_15870001 RAL-181 1162 chr3L 15939863 15939882 chr3L 15939926 15939958 5 73 1.5 1.5 1.5 2.0 95 chr3L 15939863 intron Pka-C3 - chr3L 15939910 intron Pka-C3 - chr3L 15939958 intron Pka-C3 - chr3L_5_15935001 chr3L_15935001 RAL-181 1163 chr3L 15981678 15981684 chr3L 15981764 15981770 5 86 4.0 1.5 2.8 1.3 92 chr3L 15981678 intron,3` UTR brm -,CG17027 + chr3L 15981724 intron,3` UTR brm -,CG17027 + chr3L 15981770 intron,3` UTR brm -,CG17027 + chr3L_5_15980001 chr3L_15980001 RAL-181 1164 chr3L 16162596 16162629 chr3L 16162679 16162712 8 79 5.5 2.5 4.0 1.6 116 chr3L 16162596 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162712 intron CG5151 - chr3L_8_16160001 chr3L_16160001 RAL-181 1165 chr3L 16180350 16180367 chr3L 16180452 16180469 8 102 4.5 1.0 2.8 2.1 119 chr3L 16180350 intergenic not near genes chr3L 16180410 intergenic not near genes chr3L 16180469 intergenic not near genes chr3L_8_16180001 chr3L_16180001 RAL-181 1166 chr3L 16184111 16184141 chr3L 16188922 16188960 X-element 7 4817 2.0 3.0 2.5 2.0 4849 chr3L 16184111 intergenic not near genes chr3L 16186536 intergenic not near genes chr3L 16188960 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-181 1167 chr3L 16220508 16220523 chr3L 16220591 16220608 5 84 1.5 2.0 1.8 1.8 100 chr3L 16220508 intergenic not near genes chr3L 16220558 intergenic not near genes chr3L 16220608 intergenic not near genes chr3L_5_16220001 chr3L_16220001 RAL-181 1168 chr3L 16443849 16443875 chr3L 16446187 16446215 Doc 11 2338 4.0 6.0 5.0 1.8 2366 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_11_16445001 chr3L_16445001 RAL-181 1169 chr3L 16457544 16457554 chr3L 16457639 16457647 4 94 1.0 9.5 5.2 0.6 103 chr3L 16457544 intron CG33158 + chr3L 16457596 intron CG33158 + chr3L 16457647 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-181 1170 chr3L 16493975 16493992 chr3L 16494492 16494509 jockey 7 516 10.5 5.5 8.0 0.8 534 chr3L 16493975 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494242 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494509 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-181 1171 chr3L 16503626 16503658 chr3L 16503702 16503721 7 74 5.0 1.5 3.2 1.7 95 chr3L 16503626 intron CG43373 - chr3L 16503674 intron CG43373 - chr3L 16503721 intron CG43373 - chr3L_7_16500001 chr3L_16500001 RAL-181 1172 chr3L 16533569 16533583 chr3L 16533680 16533694 4 111 1.0 2.5 1.8 1.4 125 chr3L 16533569 intron CG43373 - chr3L 16533632 intron CG43373 - chr3L 16533694 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-181 1173 chr3L 16540065 16540088 chr3L 16540153 16540174 9 88 0.5 6.5 3.5 2.0 109 chr3L 16540065 intron CG43373 - chr3L 16540120 intron CG43373 - chr3L 16540174 intron CG43373 - chr3L_9_16540001 chr3L_16540001 RAL-181 1174 chr3L 16547033 16547067 chr3L 16547419 16547453 13 383 5.0 5.0 5.0 2.2 420 chr3L 16547033 intergenic not near genes chr3L 16547243 intergenic not near genes chr3L 16547453 intergenic not near genes chr3L_13_16545001 chr3L_16545001 RAL-181 1175 chr3L 16581767 16581796 chr3L 16582131 16582160 20 360 6.5 10.0 8.2 2.2 393 chr3L 16581767 5` UTR CR43727 + chr3L 16581964 5` UTR CR43727 + chr3L 16582160 5` UTR CR43727 + chr3L_20_16580001 chr3L_16580001 RAL-181 1176 chr3L 16616509 16616534 chr3L 16621837 16621862 297 8 5327 5.5 5.0 5.2 1.3 5353 chr3L 16616509 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621862 3` UTR Abl - chr3L_8_16615001 chr3L_16615001 RAL-181 1177 chr3L 16684034 16684045 chr3L 16689254 16689266 copia 4 5220 2.0 6.5 4.2 0.8 5232 chr3L 16684034 intron,intron Lasp -,CG43954 - chr3L 16686650 intron,intron Lasp -,CG43954 - chr3L 16689266 intron,intron Lasp -,CG43954 - chr3L_4_16685001 chr3L_16685001 RAL-181 1178 chr3L 16817876 16817879 chr3L 16818016 16818019 4 140 15.0 4.0 9.5 0.4 143 chr3L 16817876 intron,intron nudC +,CG13024 - chr3L 16817948 intron,intron nudC +,CG13024 - chr3L 16818019 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-181 1179 chr3L 16817886 16817907 chr3L 16818015 16818047 7 137 10.0 3.5 6.8 0.9 161 chr3L 16817886 intron,intron nudC +,CG13024 - chr3L 16817966 intron,intron nudC +,CG13024 - chr3L 16818047 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-181 1180 chr3L 16876453 16876480 chr3L 16876538 16876554 8 84 4.5 1.5 3.0 2.0 101 chr3L 16876453 intron Lmpt + chr3L 16876504 intron Lmpt + chr3L 16876554 intron Lmpt + chr3L_8_16875001 chr3L_16875001 RAL-181 1181 chr3L 16945725 16945759 chr3L 16954878 16954892 roo 18 9145 7.5 7.5 7.5 2.1 9167 chr3L 16945725 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954892 5` UTR Nc73EF + chr3L_18_16950001 chr3L_16950001 RAL-181 1182 chr3L 17026788 17026821 chr3L 17026869 17026901 13 77 4.0 1.5 2.8 3.4 113 chr3L 17026788 exon Fit2 + chr3L 17026844 3` UTR Fit2 + chr3L 17026901 3` UTR Fit2 + chr3L_13_17025001 chr3L_17025001 RAL-181 1183 chr3L 17085010 17085038 chr3L 17094151 17094187 roo 11 9147 1.5 1.0 1.2 5.0 9177 chr3L 17085010 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094187 intron Rbp6 - chr3L_11_17085001 chr3L_17085001 RAL-181 1184 chr3L 17120657 17120683 chr3L 17120733 17120759 10 74 5.0 4.5 4.8 1.7 102 chr3L 17120657 intron Rbp6 - chr3L 17120708 intron Rbp6 - chr3L 17120759 intron Rbp6 - chr3L_10_17120001 chr3L_17120001 RAL-181 1185 chr3L 17149166 17149193 chr3L 17149246 17149262 6 79 2.0 0.0 1.0 3.0 96 chr3L 17149166 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149262 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-181 1186 chr3L 17309206 17309236 chr3L 17309293 17309308 6 86 3.5 5.0 4.2 1.2 102 chr3L 17309206 intergenic not near genes chr3L 17309257 intergenic not near genes chr3L 17309308 intergenic not near genes chr3L_6_17305001 chr3L_17305001 RAL-181 1187 chr3L 17510732 17510765 chr3L 17510816 17510848 20 82 5.0 5.5 5.2 3.2 116 chr3L 17510732 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_20_17510001 chr3L_17510001 RAL-181 1188 chr3L 17516985 17517013 chr3L 17524543 17524571 412 9 7555 4.5 4.0 4.2 1.7 7586 chr3L 17516985 intron CG7564 + chr3L 17520778 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_9_17520001 chr3L_17520001 RAL-181 1189 chr3L 17646018 17646048 chr3L 17646186 17646213 15 169 47.0 37.0 42.0 0.3 195 chr3L 17646018 exon CG43085 - chr3L 17646116 exon CG43085 - chr3L 17646213 exon CG43085 - chr3L_15_17645001 chr3L_17645001 RAL-181 1190 chr3L 17708309 17708337 chr3L 17708511 17708536 8 201 5.0 0.0 2.5 2.3 227 chr3L 17708309 intron Ccn + chr3L 17708422 intron Ccn + chr3L 17708536 intron Ccn + chr3L_8_17705001 chr3L_17705001 RAL-181 1191 chr3L 17789844 17789874 chr3L 17789920 17789950 6 73 0.5 4.0 2.2 1.9 106 chr3L 17789844 intergenic not near genes chr3L 17789897 intergenic not near genes chr3L 17789950 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-181 1192 chr3L 17837626 17837656 chr3L 17837713 17837744 16 86 3.0 5.5 4.2 3.1 118 chr3L 17837626 exon Grd + chr3L 17837685 intron Grd + chr3L 17837744 exon Grd + chr3L_16_17835001 chr3L_17835001 RAL-181 1193 chr3L 17914323 17914355 chr3L 17914982 17915014 10 653 3.5 2.5 3.0 2.5 691 chr3L 17914323 intergenic not near genes chr3L 17914668 intergenic not near genes chr3L 17915014 intergenic not near genes chr3L_10_17910001 chr3L_17910001 RAL-181 1194 chr3L 17918375 17918402 chr3L 17921178 17921205 opus 6 2803 1.5 1.5 1.5 2.4 2830 chr3L 17918375 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921205 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-181 1195 chr3L 17939061 17939095 chr3L 17939161 17939195 21 99 2.5 5.5 4.0 4.2 134 chr3L 17939061 intron CG43174 + chr3L 17939128 intron CG43174 + chr3L 17939195 intron CG43174 + chr3L_21_17935001 chr3L_17935001 RAL-181 1196 chr3L 17991577 17991604 chr3L 17991655 17991682 8 78 1.5 4.5 3.0 2.0 105 chr3L 17991577 intron Eip75B - chr3L 17991630 intron Eip75B - chr3L 17991682 intron Eip75B - chr3L_8_17990001 chr3L_17990001 RAL-181 1197 chr3L 17999780 17999790 chr3L 17999860 17999870 4 80 5.0 0.5 2.8 1.1 90 chr3L 17999780 intron Eip75B - chr3L 17999825 intron Eip75B - chr3L 17999870 intron Eip75B - chr3L_4_17995001 chr3L_17995001 RAL-181 1198 chr3L 18002728 18002739 chr3L 18002815 18002826 4 87 0.0 5.0 2.5 1.1 98 chr3L 18002728 intron Eip75B - chr3L 18002777 intron Eip75B - chr3L 18002826 intron Eip75B - chr3L_4_18000001 chr3L_18000001 RAL-181 1199 chr3L 18021355 18021389 chr3L 18021447 18021468 20 88 6.5 4.5 5.5 3.1 113 chr3L 18021355 intron Eip75B - chr3L 18021412 intron Eip75B - chr3L 18021468 intron Eip75B - chr3L_20_18020001 chr3L_18020001 RAL-181 1200 chr3L 18042245 18042272 chr3L 18042323 18042350 8 76 4.0 0.5 2.2 2.5 105 chr3L 18042245 intron Eip75B - chr3L 18042298 intron Eip75B - chr3L 18042350 intron Eip75B - chr3L_8_18040001 chr3L_18040001 RAL-181 1201 chr3L 18150419 18150431 chr3L 18150521 18150533 6 102 1.5 0.0 0.8 3.3 114 chr3L 18150419 intron CG7330 + chr3L 18150476 intron CG7330 + chr3L 18150533 intron CG7330 + chr3L_6_18150001 chr3L_18150001 RAL-181 1202 chr3L 18203595 18203607 chr3L 18203690 18203702 4 95 4.5 0.0 2.2 1.2 107 chr3L 18203595 3` UTR CG7320 + chr3L 18203648 intergenic CG7320 + chr3L 18203702 intergenic CG7320 + chr3L_4_18200001 chr3L_18200001 RAL-181 1203 chr3L 18221102 18221128 chr3L 18221182 18221207 9 80 0.5 0.0 0.2 7.5 105 chr3L 18221102 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221207 intergenic not near genes chr3L_9_18220001 chr3L_18220001 RAL-181 1204 chr3L 18223166 18223184 chr3L 18223249 18223266 10 82 0.5 0.0 0.2 8.3 100 chr3L 18223166 intergenic not near genes chr3L 18223216 intergenic not near genes chr3L 18223266 intergenic not near genes chr3L_10_18220001 chr3L_18220001 RAL-181 1205 chr3L 18408733 18408759 chr3L 18408819 18408845 6 84 1.5 1.5 1.5 2.4 112 chr3L 18408733 intergenic not near genes chr3L 18408789 intergenic not near genes chr3L 18408845 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-181 1206 chr3L 18436064 18436096 chr3L 18436162 18436194 6 98 2.5 3.0 2.8 1.6 130 chr3L 18436064 intergenic not near genes chr3L 18436129 intergenic not near genes chr3L 18436194 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-181 1207 chr3L 18456272 18456303 chr3L 18456360 18456391 7 86 1.0 3.0 2.0 2.3 119 chr3L 18456272 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-181 1208 chr3L 18501347 18501380 chr3L 18501460 18501493 12 111 2.5 2.5 2.5 3.4 146 chr3L 18501347 intron AstC-R2 - chr3L 18501420 intron AstC-R2 - chr3L 18501493 intron AstC-R2 - chr3L_12_18500001 chr3L_18500001 RAL-181 1209 chr3L 18506146 18506160 chr3L 18509592 18509619 F-element 8 3457 2.0 2.5 2.2 2.5 3473 chr3L 18506146 intergenic not near genes chr3L 18507882 intergenic not near genes chr3L 18509619 intergenic not near genes chr3L_8_18505001 chr3L_18505001 RAL-181 1210 chr3L 18528635 18528651 chr3L 18537789 18537812 roo 6 9158 4.0 1.5 2.8 1.6 9177 chr3L 18528635 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537812 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-181 1211 chr3L 18562730 18562755 chr3L 18562814 18562826 10 80 6.5 4.0 5.2 1.6 96 chr3L 18562730 intron AstC-R1 + chr3L 18562778 intron AstC-R1 + chr3L 18562826 intron AstC-R1 + chr3L_10_18560001 chr3L_18560001 RAL-181 1212 chr3L 18567026 18567055 chr3L 18567112 18567141 10 83 0.5 4.5 2.5 2.9 115 chr3L 18567026 intron AstC-R1 + chr3L 18567084 intron AstC-R1 + chr3L 18567141 intron AstC-R1 + chr3L_10_18565001 chr3L_18565001 RAL-181 1213 chr3L 18590273 18590287 chr3L 18590355 18590369 6 79 6.5 3.0 4.8 1.0 96 chr3L 18590273 intergenic CG7271 + chr3L 18590321 intergenic CG7271 + chr3L 18590369 intergenic CG7271 + chr3L_6_18590001 chr3L_18590001 RAL-181 1214 chr3L 18638599 18638608 chr3L 18638693 18638701 5 94 2.0 5.5 3.8 1.0 102 chr3L 18638599 intron MYPT-75D + chr3L 18638650 intron MYPT-75D + chr3L 18638701 intron MYPT-75D + chr3L_5_18635001 chr3L_18635001 RAL-181 1215 chr3L 18656182 18656217 chr3L 18656267 18656302 25 83 6.0 7.0 6.5 3.3 120 chr3L 18656182 intron MYPT-75D + chr3L 18656242 intron MYPT-75D + chr3L 18656302 intron MYPT-75D + chr3L_25_18655001 chr3L_18655001 RAL-181 1216 chr3L 18665220 18665234 chr3L 18665304 18665318 4 84 4.5 0.0 2.2 1.2 98 chr3L 18665220 intron MYPT-75D + chr3L 18665269 intron MYPT-75D + chr3L 18665318 intron MYPT-75D + chr3L_4_18665001 chr3L_18665001 RAL-181 1217 chr3L 18679632 18679655 chr3L 18679712 18679723 5 76 2.0 6.5 4.2 1.0 91 chr3L 18679632 intergenic not near genes chr3L 18679678 intergenic not near genes chr3L 18679723 intergenic not near genes chr3L_5_18675001 chr3L_18675001 RAL-181 1218 chr3L 18721772 18721802 chr3L 18721861 18721878 7 86 3.0 3.0 3.0 1.8 106 chr3L 18721772 intergenic CG12477 - chr3L 18721825 intergenic CG12477 - chr3L 18721878 intergenic CG12477 - chr3L_7_18720001 chr3L_18720001 RAL-181 1219 chr3L 18738667 18738696 chr3L 18738751 18738784 9 86 1.5 2.0 1.8 3.2 117 chr3L 18738667 intergenic not near genes chr3L 18738726 intergenic not near genes chr3L 18738784 intergenic not near genes chr3L_9_18735001 chr3L_18735001 RAL-181 1220 chr3L 18772407 18772441 chr3L 18781088 18781122 roo 27 8679 3.0 6.5 4.8 4.7 8715 chr3L 18772407 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_27_18775001 chr3L_18775001 RAL-181 1221 chr3L 18833780 18833811 chr3L 18834944 18834975 1360 15 1162 2.5 4.5 3.5 3.3 1195 chr3L 18833780 intron Indy - chr3L 18834378 intron Indy - chr3L 18834975 intron Indy - chr3L_15_18830001 chr3L_18830001 RAL-181 1222 chr3L 18839735 18839761 chr3L 18839818 18839844 7 82 3.0 3.5 3.2 1.7 109 chr3L 18839735 intron Indy - chr3L 18839790 intron Indy - chr3L 18839844 intron Indy - chr3L_7_18835001 chr3L_18835001 RAL-181 1223 chr3L 18868975 18868991 chr3L 18869056 18869072 5 81 2.0 0.0 1.0 2.5 97 chr3L 18868975 3` UTR Dysb + chr3L 18869024 3` UTR Dysb + chr3L 18869072 3` UTR Dysb + chr3L_5_18865001 chr3L_18865001 RAL-181 1224 chr3L 18929964 18929992 chr3L 18930041 18930063 16 82 4.5 3.5 4.0 3.2 99 chr3L 18929964 intron CG32204 - chr3L 18930014 intron CG32204 - chr3L 18930063 intron CG32204 - chr3L_16_18930001 chr3L_18930001 RAL-181 1225 chr3L 18933624 18933639 chr3L 18933718 18933733 6 94 1.5 1.5 1.5 2.4 109 chr3L 18933624 intron CG32204 - chr3L 18933678 intron CG32204 - chr3L 18933733 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-181 1226 chr3L 18969619 18969630 chr3L 18969689 18969725 15 87 3.5 3.5 3.5 3.3 106 chr3L 18969619 intergenic not near genes chr3L 18969672 intergenic not near genes chr3L 18969725 intergenic not near genes chr3L_15_18965001 chr3L_18965001 RAL-181 1227 chr3L 19008846 19008877 chr3L 19009184 19009213 jockey 11 335 4.0 9.0 6.5 1.5 367 chr3L 19008846 intron nkd - chr3L 19009030 intron nkd - chr3L 19009213 intron nkd - chr3L_11_19005001 chr3L_19005001 RAL-181 1228 chr3L 19018851 19018861 chr3L 19018935 19018952 4 87 1.5 1.0 1.2 1.8 101 chr3L 19018851 intron nkd - chr3L 19018902 intron nkd - chr3L 19018952 intron nkd - chr3L_4_19015001 chr3L_19015001 RAL-181 1229 chr3L 19090737 19090740 chr3L 19090816 19090822 5 80 9.0 8.0 8.5 0.5 85 chr3L 19090737 5` UTR CR45386 + chr3L 19090780 5` UTR CR45386 + chr3L 19090822 5` UTR CR45386 + chr3L_5_19090001 chr3L_19090001 RAL-181 1230 chr3L 19090743 19090763 chr3L 19090812 19090842 10 78 6.0 8.0 7.0 1.2 99 chr3L 19090743 5` UTR CR45386 + chr3L 19090792 5` UTR CR45386 + chr3L 19090842 5` UTR CR45386 + chr3L_10_19090001 chr3L_19090001 RAL-181 1231 chr3L 19115651 19115672 chr3L 19115814 19115852 BS 5 176 2.0 3.0 2.5 1.4 201 chr3L 19115651 intron CG14082 - chr3L 19115752 intron CG14082 - chr3L 19115852 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-181 1232 chr3L 19117051 19117075 chr3L 19124493 19124522 mdg1 11 7445 4.5 5.0 4.8 1.9 7471 chr3L 19117051 intron CG14082 - chr3L 19120786 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-181 1233 chr3L 19176210 19176240 chr3L 19176294 19176324 26 82 9.5 5.0 7.2 3.2 114 chr3L 19176210 intron fz2 - chr3L 19176267 intron fz2 - chr3L 19176324 intron fz2 - chr3L_26_19175001 chr3L_19175001 RAL-181 1234 chr3L 19182389 19182420 chr3L 19182470 19182483 9 78 2.0 5.5 3.8 1.9 94 chr3L 19182389 intron fz2 - chr3L 19182436 intron fz2 - chr3L 19182483 intron fz2 - chr3L_9_19180001 chr3L_19180001 RAL-181 1235 chr3L 19208060 19208089 chr3L 19209434 19209460 Doc 11 1371 8.5 4.5 6.5 1.5 1400 chr3L 19208060 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209460 intron fz2 - chr3L_11_19205001 chr3L_19205001 RAL-181 1236 chr3L 19220632 19220636 chr3L 22908066 22908067 12 3687433 38.5 30.5 34.5 0.3 3687435 chr3L 19220632 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_12_21060001 chr3L_21060001 RAL-181 1237 chr3L 19220637 19220637 chr3L 22908066 22908067 5 3687429 39.0 30.5 34.8 0.1 3687430 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-181 1238 chr3L 19222373 19222389 chr3L 19222492 19222510 5 120 1.5 0.5 1.0 2.5 137 chr3L 19222373 intron fz2 - chr3L 19222442 intron fz2 - chr3L 19222510 intron fz2 - chr3L_5_19220001 chr3L_19220001 RAL-181 1239 chr3L 19244120 19244139 chr3L 19244197 19244199 8 75 3.0 8.0 5.5 1.2 79 chr3L 19244120 intergenic not near genes chr3L 19244160 intergenic not near genes chr3L 19244199 intergenic not near genes chr3L_8_19240001 chr3L_19240001 RAL-181 1240 chr3L 19437019 19437053 chr3L 19437103 19437136 7 83 0.5 2.5 1.5 2.8 117 chr3L 19437019 intergenic not near genes chr3L 19437078 intergenic not near genes chr3L 19437136 intergenic not near genes chr3L_7_19435001 chr3L_19435001 RAL-181 1241 chr3L 19457907 19457939 chr3L 19457984 19458017 10 76 4.5 6.0 5.2 1.6 110 chr3L 19457907 intergenic not near genes chr3L 19457962 intergenic not near genes chr3L 19458017 intergenic not near genes chr3L_10_19455001 chr3L_19455001 RAL-181 1242 chr3L 19493226 19493249 chr3L 19493303 19493309 5 71 2.0 4.0 3.0 1.2 83 chr3L 19493226 intron CG9449 - chr3L 19493268 intron CG9449 - chr3L 19493309 intron CG9449 - chr3L_5_19490001 chr3L_19490001 RAL-181 1243 chr3L 19527932 19527958 chr3L 19528011 19528036 9 77 2.5 5.0 3.8 1.9 104 chr3L 19527932 intergenic not near genes chr3L 19527984 intergenic not near genes chr3L 19528036 intergenic not near genes chr3L_9_19525001 chr3L_19525001 RAL-181 1244 chr3L 19703842 19703878 chr3L 19703996 19704032 13 154 4.5 4.0 4.2 2.5 190 chr3L 19703842 intron serp - chr3L 19703937 intron serp - chr3L 19704032 intron serp - chr3L_13_19700001 chr3L_19700001 RAL-181 1245 chr3L 19801820 19801853 chr3L 19802179 19802212 16 358 7.0 11.0 9.0 1.6 392 chr3L 19801820 exon Ir76a + chr3L 19802016 exon Ir76a + chr3L 19802212 exon Ir76a + chr3L_16_19800001 chr3L_19800001 RAL-181 1246 chr3L 19848505 19848533 chr3L 19857695 19857723 roo 8 9188 3.5 6.5 5.0 1.3 9218 chr3L 19848505 intron Papss + chr3L 19853114 intron Papss + chr3L 19857723 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-181 1247 chr3L 19981203 19981235 chr3L 19981283 19981315 6 80 7.0 0.5 3.8 1.2 112 chr3L 19981203 intergenic CG17732 + chr3L 19981259 intergenic CG17732 + chr3L 19981315 intergenic CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-181 1248 chr3L 20038820 20038853 chr3L 20038995 20039029 10 176 2.5 1.5 2.0 3.3 209 chr3L 20038820 intergenic not near genes chr3L 20038924 intergenic not near genes chr3L 20039029 intergenic not near genes chr3L_10_20035001 chr3L_20035001 RAL-181 1249 chr3L 20066963 20066981 chr3L 20067229 20067248 12 265 4.0 0.5 2.2 3.8 285 chr3L 20066963 intron sNPF-R - chr3L 20067106 intron sNPF-R - chr3L 20067248 intron sNPF-R - chr3L_12_20065001 chr3L_20065001 RAL-181 1250 chr3L 20086787 20086799 chr3L 20086864 20086877 4 78 4.5 0.5 2.5 1.1 90 chr3L 20086787 intron sNPF-R - chr3L 20086832 intron sNPF-R - chr3L 20086877 intron sNPF-R - chr3L_4_20085001 chr3L_20085001 RAL-181 1251 chr3L 20094572 20094582 chr3L 20094878 20094881 5 314 3.0 2.5 2.8 1.3 309 chr3L 20094572 intergenic not near genes chr3L 20094726 intergenic not near genes chr3L 20094881 intergenic not near genes chr3L_5_20090001 chr3L_20090001 RAL-181 1252 chr3L 20096084 20096108 chr3L 20096188 20096198 6 100 2.0 0.5 1.2 2.7 114 chr3L 20096084 intergenic not near genes chr3L 20096141 intergenic not near genes chr3L 20096198 intergenic not near genes chr3L_6_20095001 chr3L_20095001 RAL-181 1253 chr3L 20113661 20113691 chr3L 20122913 20122948 roo 5 9256 0.5 2.0 1.2 2.3 9287 chr3L 20113661 intergenic not near genes chr3L 20118304 intergenic not near genes chr3L 20122948 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-181 1254 chr3L 20143083 20143116 chr3L 20143158 20143195 12 78 3.0 4.0 3.5 2.7 112 chr3L 20143083 intergenic not near genes chr3L 20143139 intergenic not near genes chr3L 20143195 intergenic not near genes chr3L_12_20140001 chr3L_20140001 RAL-181 1255 chr3L 20148285 20148316 chr3L 20148375 20148405 13 89 5.0 4.0 4.5 2.4 120 chr3L 20148285 intergenic not near genes chr3L 20148345 intergenic not near genes chr3L 20148405 intergenic not near genes chr3L_13_20145001 chr3L_20145001 RAL-181 1256 chr3L 20257342 20257361 chr3L 20258462 20258481 pogo 8 1119 3.0 7.0 5.0 1.3 1139 chr3L 20257342 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258481 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-181 1257 chr3L 20315651 20315678 chr3L 20315729 20315754 10 79 6.5 2.0 4.2 1.9 103 chr3L 20315651 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315702 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315754 3` UTR,intron alphaSnap +,CR43875 - chr3L_10_20315001 chr3L_20315001 RAL-181 1258 chr3L 20317113 20317118 chr3L 20317184 20317194 4 74 9.5 5.0 7.2 0.5 81 chr3L 20317113 3` UTR CR43875 - chr3L 20317154 3` UTR CR43875 - chr3L 20317194 3` UTR,5` UTR CR43875 -,Spn77Ba + chr3L_4_20315001 chr3L_20315001 RAL-181 1259 chr3L 20386937 20386970 chr3L 20387039 20387071 14 101 2.5 3.5 3.0 3.5 134 chr3L 20386937 intron fbl + chr3L 20387004 intron fbl + chr3L 20387071 intron fbl + chr3L_14_20385001 chr3L_20385001 RAL-181 1260 chr3L 20476771 20476778 chr3L 20484367 20484377 springer 5 7598 4.0 3.5 3.8 1.0 7606 chr3L 20476771 3` UTR isoQC + chr3L 20480574 intergenic not near genes chr3L 20484377 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-181 1261 chr3L 20590065 20590095 chr3L 20590602 20590634 412 8 533 5.0 4.5 4.8 1.4 569 chr3L 20590065 intergenic not near genes chr3L 20590350 intergenic not near genes chr3L 20590634 intergenic not near genes chr3L_8_20590001 chr3L_20590001 RAL-181 1262 chr3L 20821272 20821306 chr3L 20824740 20824774 NOF 4 3468 3.5 2.5 3.0 1.0 3502 chr3L 20821272 intron Pka-R1 + chr3L 20823023 intron Pka-R1 + chr3L 20824774 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-181 1263 chr3L 20849273 20849302 chr3L 20849352 20849377 9 77 3.0 6.0 4.5 1.6 104 chr3L 20849273 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849377 intron CG32432 - chr3L_9_20845001 chr3L_20845001 RAL-181 1264 chr3L 20849728 20849737 chr3L 20850077 20850086 5 349 4.0 4.0 4.0 1.0 358 chr3L 20849728 intron CG32432 - chr3L 20849907 intron CG32432 - chr3L 20850086 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-181 1265 chr3L 21014936 21014944 chr3L 21023396 21023405 Tirant 4 8471 8.0 3.5 5.8 0.6 8469 chr3L 21014936 intron skd - chr3L 21019170 intron skd - chr3L 21023405 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-181 1266 chr3L 21067960 21067980 chr3L 21068032 21068055 14 78 7.0 1.5 4.2 2.7 95 chr3L 21067960 intron siz + chr3L 21068008 intron siz + chr3L 21068055 intron siz + chr3L_14_21065001 chr3L_21065001 RAL-181 1267 chr3L 21082214 21082236 chr3L 21082290 21082314 8 77 2.0 3.5 2.8 2.1 100 chr3L 21082214 intron ko - chr3L 21082264 intron ko - chr3L 21082314 intron ko - chr3L_8_21080001 chr3L_21080001 RAL-181 1268 chr3L 21150933 21150960 chr3L 21151066 21151096 10 136 2.0 2.5 2.2 3.1 163 chr3L 21150933 intron Ac78C - chr3L 21151014 intron Ac78C - chr3L 21151096 intron Ac78C - chr3L_10_21150001 chr3L_21150001 RAL-181 1269 chr3L 21151864 21151892 chr3L 21156948 21156976 flea 5 5084 6.5 0.5 3.5 1.1 5112 chr3L 21151864 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156976 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-181 1270 chr3L 21160962 21160992 chr3L 21161058 21161088 23 93 3.5 5.0 4.2 4.4 126 chr3L 21160962 5` UTR Ac78C - chr3L 21161025 intron Ac78C - chr3L 21161088 intron Ac78C - chr3L_23_21160001 chr3L_21160001 RAL-181 1271 chr3L 21170055 21170085 chr3L 21170280 21170309 11 222 4.5 4.5 4.5 2.0 254 chr3L 21170055 intron Ac78C - chr3L 21170182 intron Ac78C - chr3L 21170309 intron Ac78C - chr3L_11_21170001 chr3L_21170001 RAL-181 1272 chr3L 21243752 21243774 chr3L 21251313 21251330 412 5 7560 3.5 5.0 4.2 1.0 7578 chr3L 21243752 intron Eip78C + chr3L 21247541 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-181 1273 chr3L 21274206 21274239 chr3L 21274377 21274402 10 170 1.5 5.0 3.2 2.4 196 chr3L 21274206 intron AcCoAS - chr3L 21274304 intron AcCoAS - chr3L 21274402 intron AcCoAS - chr3L_10_21270001 chr3L_21270001 RAL-181 1274 chr3L 21306151 21306174 chr3L 21315310 21315333 roo 5 9159 4.0 2.5 3.2 1.2 9182 chr3L 21306151 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310742 intron Pc - chr3L 21315333 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-181 1275 chr3L 21319527 21319555 chr3L 21319617 21319645 6 88 2.5 6.0 4.2 1.2 118 chr3L 21319527 5` UTR Rab26 + chr3L 21319586 5` UTR Rab26 + chr3L 21319645 5` UTR Rab26 + chr3L_6_21315001 chr3L_21315001 RAL-181 1276 chr3L 21415135 21415165 chr3L 21415218 21415247 14 80 2.5 6.0 4.2 2.7 112 chr3L 21415135 intron rgn + chr3L 21415191 intron rgn + chr3L 21415247 intron rgn + chr3L_14_21415001 chr3L_21415001 RAL-181 1277 chr3L 21498851 21498868 chr3L 21500470 21500497 1360 7 1627 2.5 6.5 4.5 1.3 1646 chr3L 21498851 intron Glg1 - chr3L 21499674 intron Glg1 - chr3L 21500497 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-181 1278 chr3L 21749329 21749333 chr3L 21754477 21754493 Doc 5 5155 9.5 10.5 10.0 0.5 5164 chr3L 21749329 intron Syn1 - chr3L 21751911 intron Syn1 - chr3L 21754493 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-181 1279 chr3L 21776671 21776693 chr3L 21776758 21776780 7 87 2.0 4.0 3.0 1.8 109 chr3L 21776671 intron,intron CG42689 +,CG42552 + chr3L 21776726 intron,intron CG42689 +,CG42552 + chr3L 21776780 intron,intron CG42689 +,CG42552 + chr3L_7_21775001 chr3L_21775001 RAL-181 1280 chr3L 21849503 21849532 chr3L 21849580 21849614 10 80 3.0 4.0 3.5 2.2 111 chr3L 21849503 intron mub + chr3L 21849558 intron mub + chr3L 21849614 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-181 1281 chr3L 21901024 21901045 chr3L 21901117 21901138 7 91 4.0 8.5 6.2 1.0 114 chr3L 21901024 intron mub + chr3L 21901081 intron mub + chr3L 21901138 intron mub + chr3L_7_21900001 chr3L_21900001 RAL-181 1282 chr3L 22099675 22099705 chr3L 22105861 22105891 3S18 9 6185 4.0 3.5 3.8 1.9 6216 chr3L 22099675 intergenic not near genes chr3L 22102783 intergenic not near genes chr3L 22105891 intergenic not near genes chr3L_9_22100001 chr3L_22100001 RAL-181 1283 chr3L 22114780 22114808 chr3L 22114858 22114886 8 77 2.5 5.5 4.0 1.6 106 chr3L 22114780 intergenic not near genes chr3L 22114833 intergenic not near genes chr3L 22114886 intergenic not near genes chr3L_8_22110001 chr3L_22110001 RAL-181 1284 chr3L 22137538 22137552 chr3L 22137600 22137628 6 72 2.0 3.5 2.8 1.6 90 chr3L 22137538 intron olf413 + chr3L 22137583 intron olf413 + chr3L 22137628 intron olf413 + chr3L_6_22135001 chr3L_22135001 RAL-181 1285 chr3L 22223441 22223469 chr3L 22223600 22223613 7 155 6.0 6.5 6.2 1.0 172 chr3L 22223441 intron olf413 + chr3L 22223527 intron olf413 + chr3L 22223613 intron olf413 + chr3L_7_22220001 chr3L_22220001 RAL-181 1286 chr3L 22379938 22379968 chr3L 22380034 22380066 15 96 1.5 8.5 5.0 2.5 128 chr3L 22379938 intron Ten-m - chr3L 22380002 intron Ten-m - chr3L 22380066 intron Ten-m - chr3L_15_22380001 chr3L_22380001 RAL-181 1287 chr3L 22413873 22413902 chr3L 22413957 22413986 14 80 3.5 8.0 5.8 2.1 113 chr3L 22413873 intergenic not near genes chr3L 22413930 intergenic not near genes chr3L 22413986 intergenic not near genes chr3L_14_22410001 chr3L_22410001 RAL-181 1288 chr3L 22447199 22447234 chr3L 22447290 22447313 16 89 3.0 3.5 3.2 3.8 114 chr3L 22447199 intergenic not near genes chr3L 22447256 intergenic not near genes chr3L 22447313 intergenic not near genes chr3L_16_22445001 chr3L_22445001 RAL-181 1289 chr3L 22477054 22477085 chr3L 22477145 22477176 9 89 0.5 7.5 4.0 1.8 122 chr3L 22477054 intergenic not near genes chr3L 22477115 intergenic not near genes chr3L 22477176 intergenic not near genes chr3L_9_22475001 chr3L_22475001 RAL-181 1290 chr3L 22523536 22523570 chr3L 22523710 22523744 15 168 4.5 3.0 3.8 3.1 208 chr3L 22523536 intergenic not near genes chr3L 22523640 intergenic not near genes chr3L 22523744 intergenic not near genes chr3L_15_22520001 chr3L_22520001 RAL-181 1291 chr3L 22555771 22555796 chr3L 22563238 22563265 blood 11 7462 3.0 4.0 3.5 2.4 7494 chr3L 22555771 intergenic not near genes chr3L 22559518 intergenic not near genes chr3L 22563265 intergenic not near genes chr3L_11_22555001 chr3L_22555001 RAL-181 1292 chr3L 22577619 22577653 chr3L 22582407 22582441 Doc 15 4786 0.5 5.5 3.0 3.8 4822 chr3L 22577619 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582441 3` UTR CG14459 - chr3L_15_22580001 chr3L_22580001 RAL-181 1293 chr3L 22617195 22617220 chr3L 22624647 22624665 blood 12 7450 7.5 5.5 6.5 1.6 7470 chr3L 22617195 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624665 intron CG14459 - chr3L_12_22620001 chr3L_22620001 RAL-181 1294 chr3L 22626866 22626900 chr3L 22626956 22626990 12 87 5.0 3.0 4.0 2.4 124 chr3L 22626866 intron CG14459 - chr3L 22626928 intron CG14459 - chr3L 22626990 intron CG14459 - chr3L_12_22625001 chr3L_22625001 RAL-181 1295 chr3L 22678075 22678085 chr3L 22678168 22678178 6 92 13.5 4.0 8.8 0.6 103 chr3L 22678075 intron CG14457 + chr3L 22678126 intron CG14457 + chr3L 22678178 intron CG14457 + chr3L_6_22675001 chr3L_22675001 RAL-181 1296 chr3L 22678086 22678111 chr3L 22678167 22678200 15 82 4.5 3.5 4.0 3.0 114 chr3L 22678086 intron CG14457 + chr3L 22678143 intron CG14457 + chr3L 22678200 intron CG14457 + chr3L_15_22675001 chr3L_22675001 RAL-181 1297 chr3L 22741502 22741522 chr3L 22741608 22741628 7 103 3.5 5.0 4.2 1.3 126 chr3L 22741502 intergenic l(3)04053 -,CG7369 + chr3L 22741565 intergenic l(3)04053 -,CG7369 + chr3L 22741628 intergenic CG7369 +,l(3)04053 - chr3L_7_22740001 chr3L_22740001 RAL-181 1298 chr3L 22761388 22761415 chr3L 22766821 22766849 Ivk 7 5432 4.5 3.0 3.8 1.5 5461 chr3L 22761388 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766849 intron SPoCk + chr3L_7_22760001 chr3L_22760001 RAL-181 1299 chr3L 22853471 22853723 chr3L 22853548 22853809 20 85 2.0 8.5 5.2 3.2 338 chr3L 22853471 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853640 5` UTR CR43426 + chr3L 22853809 5` UTR CR43426 + chr3L_20_22850001 chr3L_22850001 RAL-181 1300 chr3L 22881821 22881855 chr3L 22882181 22882215 8 360 2.5 3.5 3.0 2.0 394 chr3L 22881821 intron slif + chr3L 22882018 intron slif + chr3L 22882215 intron slif + chr3L_8_22880001 chr3L_22880001 RAL-181 1301 chr3L 19220634 19220636 chr3L 22908066 22908066 8 3687431 38.5 30.5 34.5 0.2 3687432 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-181 1302 chr3L 19220633 19220636 chr3L 22908067 22908067 11 3687433 38.5 30.0 34.2 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_11_21060001 chr3L_21060001 RAL-181 1303 chr3L 22909020 22909053 chr3L 22909108 22909139 23 89 6.0 7.5 6.8 2.9 119 chr3L 22909020 intergenic CR45661 + chr3L 22909080 intergenic CR45661 + chr3L 22909139 intergenic CR45661 + chr3L_23_22905001 chr3L_22905001 RAL-181 1304 chr3L 22924949 22924974 chr3L 22925024 22925052 5 73 3.5 0.0 1.8 1.8 103 chr3L 22924949 intergenic not near genes chr3L 22925000 intergenic not near genes chr3L 22925052 intergenic not near genes chr3L_5_22920001 chr3L_22920001 RAL-181 1305 chr3L 22962454 22962477 chr3L 22963775 22963798 INE-1 15 1319 3.0 8.5 5.8 2.2 1344 chr3L 22962454 intergenic not near genes chr3L 22963126 intergenic not near genes chr3L 22963798 intergenic not near genes chr3L_15_22960001 chr3L_22960001 RAL-181 1306 chr3L 22964699 22964736 chr3L 22964793 22964830 15 93 3.5 5.5 4.5 2.7 131 chr3L 22964699 intergenic not near genes chr3L 22964764 intergenic not near genes chr3L 22964830 intergenic not near genes chr3L_15_22960001 chr3L_22960001 RAL-181 1307 chr3L 22985303 22985334 chr3L 22985386 22985403 7 79 2.5 1.5 2.0 2.3 100 chr3L 22985303 intergenic not near genes chr3L 22985353 intergenic not near genes chr3L 22985403 intergenic not near genes chr3L_7_22985001 chr3L_22985001 RAL-181 1308 chr3L 22989864 22989895 chr3L 22996835 22996869 297 8 6971 4.0 6.5 5.2 1.3 7005 chr3L 22989864 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996869 intergenic not near genes chr3L_8_22990001 chr3L_22990001 RAL-181 1309 chr3L 23182819 23182832 chr3L 23182895 23182908 4 76 8.0 5.5 6.8 0.5 89 chr3L 23182819 intron CG34031 + chr3L 23182864 intron CG34031 + chr3L 23182908 intron CG34031 + chr3L_4_23180001 chr3L_23180001 RAL-181 1310 chr3L 23182833 23182853 chr3L 23182894 23182929 12 75 2.5 5.0 3.8 2.5 96 chr3L 23182833 intron CG34031 + chr3L 23182881 intron CG34031 + chr3L 23182929 intron CG34031 + chr3L_12_23180001 chr3L_23180001 RAL-181 1311 chr3L 24012407 24012428 chr3L 24020748 24020769 roo 4 8339 1.5 0.0 0.8 2.2 8362 chr3L 24012407 intergenic not near genes chr3L 24016588 intergenic not near genes chr3L 24020769 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-181 1312 chr3L 24168631 24168640 chr3L 24176392 24176399 ZAM 5 7759 10.5 8.0 9.2 0.5 7768 chr3L 24168631 intron Snap25 + chr3L 24172515 intron Snap25 + chr3L 24176399 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-181 1313 chr3L 24168645 24168662 chr3L 24176389 24176415 ZAM 6 7753 4.5 6.5 5.5 0.9 7770 chr3L 24168645 intron Snap25 + chr3L 24172530 intron Snap25 + chr3L 24176415 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-181 1314 chr3L 24290504 24290513 chr3L 24290836 24290846 4 340 6.0 2.0 4.0 0.8 342 chr3L 24290504 intron,3` UTR Snap25 +,CR45159 - chr3L 24290675 intron,3` UTR Snap25 +,CR45159 - chr3L 24290846 intron,3` UTR Snap25 +,CR45159 - chr3L_4_24290001 chr3L_24290001 RAL-181 1315 chr3L 25331638 25331653 chr3L 25331729 25331744 6 91 8.0 3.5 5.8 0.9 106 chr3L 25331638 intergenic not near genes chr3L 25331691 intergenic not near genes chr3L 25331744 intergenic not near genes chr3L_6_25330001 chr3L_25330001 RAL-181 1316 chr3L 25334729 25334752 chr3L 25334810 25334835 4 82 2.0 3.5 2.8 1.1 106 chr3L 25334729 intergenic not near genes chr3L 25334782 intergenic not near genes chr3L 25334835 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-181 1317 chr3L 25464021 25464098 chr3L 25464108 25464190 10 87 7.5 5.0 6.2 1.4 169 chr3L 25464021 intergenic not near genes chr3L 25464106 intergenic not near genes chr3L 25464190 intergenic not near genes chr3L_10_25460001 chr3L_25460001 RAL-181 1318 chr3L 25512790 25512809 chr3L 25512856 25512883 9 73 3.0 2.5 2.8 2.4 93 chr3L 25512790 intron CG41343 - chr3L 25512836 intron CG41343 - chr3L 25512883 intron CG41343 - chr3L_9_25510001 chr3L_25510001 RAL-181 1319 chr3L 25513596 25513610 chr3L 25513666 25513689 4 77 1.5 7.5 4.5 0.7 93 chr3L 25513596 intron CG41343 - chr3L 25513642 intron CG41343 - chr3L 25513689 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-181 1320 chr3L 25627819 25627834 chr3L 25627891 25627920 15 82 5.5 6.5 6.0 2.1 101 chr3L 25627819 intron CG41343 - chr3L 25627870 intron CG41343 - chr3L 25627920 intron CG41343 - chr3L_15_25625001 chr3L_25625001 RAL-181 1321 chr3L 25628501 25628527 chr3L 25633265 25633289 F-element 11 4767 7.5 5.5 6.5 1.5 4788 chr3L 25628501 intron CG41343 - chr3L 25630895 intron CG41343 - chr3L 25633289 intron CG41343 - chr3L_11_25630001 chr3L_25630001 RAL-181 1322 chr3L 25842483 25842500 chr3L 25842569 25842580 5 84 2.5 5.0 3.8 1.0 97 chr3L 25842483 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842580 intron CG40178 - chr3L_5_25840001 chr3L_25840001 RAL-181 1323 chr3L 24948769 24948773 chr3L 25934972 25934993 diver2 5 986207 29.5 21.0 25.2 0.2 986224 chr3L 24948769 intergenic not near genes chr3L 25441881 intergenic not near genes chr3L 25934993 intron CG40178 - chr3L_5_25440001 chr3L_25440001 RAL-181 1324 chr3L 26694925 26694958 chr3L 26695005 26695038 13 76 4.5 6.5 5.5 2.0 113 chr3L 26694925 intergenic not near genes chr3L 26694982 intergenic not near genes chr3L 26695038 intergenic not near genes chr3L_13_26690001 chr3L_26690001 RAL-181 1325 chr3L 23611157 23611160 chr3L 27363462 27363465 Gypsy12A_LTR 4 3752304 26.0 23.0 24.5 0.2 3752308 chr3L 23611157 intron AGO3 + chr3L 25487311 intron CG41343 - chr3L 27363465 intron Dbp80 + chr3L_4_25485001 chr3L_25485001 RAL-181 1326 chr3L 27368880 27368910 chr3L 27369425 27369447 9 542 1.0 0.5 0.8 5.0 567 chr3L 27368880 intron Dbp80 + chr3L 27369164 intron Dbp80 + chr3L 27369447 intron Dbp80 + chr3L_9_27365001 chr3L_27365001 RAL-181 1327 chr3L 27390691 27390710 chr3L 27390770 27390789 5 79 37.0 35.0 36.0 0.1 98 chr3L 27390691 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-181 1328 chr3R 758872 758880 chr3R 758977 758985 5 105 8.5 2.0 5.2 0.8 113 chr3R 758872 intergenic not near genes chr3R 758928 intergenic not near genes chr3R 758985 intergenic not near genes chr3R_5_755001 chr3R_755001 RAL-181 1329 chr3R 1062392 1062415 chr3R 1062550 1062573 4 156 1.5 2.0 1.8 1.4 181 chr3R 1062392 intron CG15831 + chr3R 1062482 intron CG15831 + chr3R 1062573 intron CG15831 + chr3R_4_1060001 chr3R_1060001 RAL-181 1330 chr3R 1443435 1443457 chr3R 1443505 1443529 7 73 2.5 1.5 2.0 2.3 94 chr3R 1443435 intron CG40155 + chr3R 1443482 intron CG40155 + chr3R 1443529 intron CG40155 + chr3R_7_1440001 chr3R_1440001 RAL-181 1331 chr3R 1451444 1451449 chr3R 1455047 1455048 Max-element 4 3600 35.0 17.5 26.2 0.1 3604 chr3R 1451444 intron CG40155 + chr3R 1453246 intron CG40155 + chr3R 1455048 exon CG40155 + chr3R_4_1450001 chr3R_1450001 RAL-181 1332 chr3R 1521168 1521171 chr3R 1521242 1521254 5 81 17.0 17.5 17.2 0.3 86 chr3R 1521168 intergenic not near genes chr3R 1521211 intergenic not near genes chr3R 1521254 intergenic not near genes chr3R_5_1520001 chr3R_1520001 RAL-181 1333 chr3R 1521172 1521183 chr3R 1521240 1521271 19 79 14.5 16.5 15.5 1.2 99 chr3R 1521172 intergenic not near genes chr3R 1521222 intergenic not near genes chr3R 1521271 intergenic not near genes chr3R_19_1520001 chr3R_1520001 RAL-181 1334 chr3R 1850886 1850903 chr3R 1853513 1853530 INE-1 6 2626 3.0 2.0 2.5 1.7 2644 chr3R 1850886 intron CG42623 + chr3R 1852208 intron CG42623 + chr3R 1853530 intron CG42623 + chr3R_6_1850001 chr3R_1850001 RAL-181 1335 chr3R 1939062 1939083 chr3R 1939155 1939177 5 92 1.5 0.0 0.8 2.8 115 chr3R 1939062 intergenic not near genes chr3R 1939120 intergenic not near genes chr3R 1939177 intergenic not near genes chr3R_5_1935001 chr3R_1935001 RAL-181 1336 chr3R 2534137 2534164 chr3R 2541702 2541733 17 7564 22.0 23.0 22.5 0.7 7596 chr3R 2534137 intergenic not near genes chr3R 2537935 intergenic not near genes chr3R 2541733 intergenic not near genes chr3R_17_2535001 chr3R_2535001 RAL-181 1337 chr3R 3019605 3019616 chr3R 3019780 3019791 4 175 16.5 4.5 10.5 0.3 186 chr3R 3019605 intron CG42618 - chr3R 3019698 intron CG42618 - chr3R 3019791 intron CG42618 - chr3R_4_3015001 chr3R_3015001 RAL-181 1338 chr3R 3178702 3178715 chr3R 3595184 3595198 12 416481 13.5 21.0 17.2 0.7 416496 chr3R 3178702 intron CG42617 - chr3R 3386950 intergenic not near genes chr3R 3595198 intergenic not near genes chr3R_12_3385001 chr3R_3385001 RAL-181 1339 chr3R 3877473 3877505 chr3R 3877613 3877622 13 136 5.0 8.0 6.5 1.7 149 chr3R 3877473 intergenic not near genes chr3R 3877548 intergenic not near genes chr3R 3877622 intergenic not near genes chr3R_13_3875001 chr3R_3875001 RAL-181 1340 chr3R 4063825 4063837 chr3R 4069094 4069110 5 5273 11.5 11.5 11.5 0.4 5285 chr3R 4063825 intergenic not near genes chr3R 4066468 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-181 1341 chr3R 4105040 4105071 chr3R 4110243 4110265 copia 11 5201 1.0 3.5 2.2 3.4 5225 chr3R 4105040 intergenic not near genes chr3R 4107652 intergenic not near genes chr3R 4110265 intergenic not near genes chr3R_11_4105001 chr3R_4105001 RAL-181 1342 chr3R 4206070 4206104 chr3R 4211644 4211677 mdg3 7 5574 5.0 0.0 2.5 2.0 5607 chr3R 4206070 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211677 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-181 1343 chr3R 4241062 4241094 chr3R 4241140 4241168 10 76 3.5 1.5 2.5 2.9 106 chr3R 4241062 3` UTR CG14642 - chr3R 4241115 3` UTR CG14642 - chr3R 4241168 intron CG14642 - chr3R_10_4240001 chr3R_4240001 RAL-181 1344 chr3R 4408408 4408437 chr3R 4412712 4412741 Juan 8 4301 3.0 2.5 2.8 2.1 4333 chr3R 4408408 intron CG32944 - chr3R 4410574 intron CG32944 - chr3R 4412741 intron CG32944 - chr3R_8_4410001 chr3R_4410001 RAL-181 1345 chr3R 4593468 4593493 chr3R 4593550 4593573 11 78 4.0 4.5 4.2 2.1 105 chr3R 4593468 intergenic not near genes chr3R 4593520 intergenic not near genes chr3R 4593573 intergenic not near genes chr3R_11_4590001 chr3R_4590001 RAL-181 1346 chr3R 4609550 4609576 chr3R 4610710 4610738 1360 13 1163 6.0 5.5 5.8 1.9 1188 chr3R 4609550 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610738 intergenic not near genes chr3R_13_4610001 chr3R_4610001 RAL-181 1347 chr3R 4678471 4678490 chr3R 4678821 4678840 7 350 3.5 2.0 2.8 1.8 369 chr3R 4678471 intron CG43427 + chr3R 4678656 intron CG43427 + chr3R 4678840 intron CG43427 + chr3R_7_4675001 chr3R_4675001 RAL-181 1348 chr3R 4753238 4753278 chr3R 4757541 4757569 F-element 14 4301 1.5 8.0 4.8 2.4 4331 chr3R 4753238 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_14_4755001 chr3R_4755001 RAL-181 1349 chr3R 4759719 4759751 chr3R 4761216 4761248 hopper2 14 1495 4.5 11.5 8.0 1.6 1529 chr3R 4759719 intron,intron atms +,CG44098 - chr3R 4760484 intron,intron atms +,CG44098 - chr3R 4761248 intron,intron atms +,CG44098 - chr3R_14_4760001 chr3R_4760001 RAL-181 1350 chr3R 4769164 4769191 chr3R 4769238 4769268 10 77 3.0 5.5 4.2 1.9 104 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769268 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-181 1351 chr3R 4861565 4861594 chr3R 4861646 4861669 19 78 7.5 5.0 6.2 2.6 104 chr3R 4861565 intron opa + chr3R 4861617 intron opa + chr3R 4861669 intron opa + chr3R_19_4860001 chr3R_4860001 RAL-181 1352 chr3R 4887479 4887511 chr3R 4894856 4894881 rover 10 7374 2.0 4.0 3.0 2.5 7402 chr3R 4887479 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894881 intergenic not near genes chr3R_10_4890001 chr3R_4890001 RAL-181 1353 chr3R 5045848 5045868 chr3R 5052950 5052969 HMS-Beagle 7 7100 5.0 4.0 4.5 1.3 7121 chr3R 5045848 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052969 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-181 1354 chr3R 5067981 5068012 chr3R 5073498 5073528 mdg3 12 5516 3.0 5.0 4.0 2.4 5547 chr3R 5067981 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073528 intergenic not near genes chr3R_12_5070001 chr3R_5070001 RAL-181 1355 chr3R 5105565 5105578 chr3R 5105630 5105652 5 69 4.0 2.5 3.2 1.2 87 chr3R 5105565 intergenic not near genes chr3R 5105608 intergenic not near genes chr3R 5105652 intergenic not near genes chr3R_5_5105001 chr3R_5105001 RAL-181 1356 chr3R 5170270 5170301 chr3R 5170370 5170402 8 98 4.0 3.0 3.5 1.8 132 chr3R 5170270 intergenic dpr16 + chr3R 5170336 intergenic dpr16 + chr3R 5170402 intergenic dpr16 + chr3R_8_5170001 chr3R_5170001 RAL-181 1357 chr3R 5193898 5193934 chr3R 5194015 5194048 16 111 5.5 6.5 6.0 2.3 150 chr3R 5193898 intron cno - chr3R 5193973 intron cno - chr3R 5194048 intron cno - chr3R_16_5190001 chr3R_5190001 RAL-181 1358 chr3R 5236234 5236245 chr3R 5236348 5236372 6 120 2.5 5.0 3.8 1.2 138 chr3R 5236234 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236303 3` UTR rtp - chr3R 5236372 3` UTR rtp - chr3R_6_5235001 chr3R_5235001 RAL-181 1359 chr3R 5250881 5250916 chr3R 5250992 5251025 5 111 5.5 4.0 4.8 0.9 144 chr3R 5250881 intron CG12163 - chr3R 5250953 intron CG12163 - chr3R 5251025 intron CG12163 - chr3R_5_5250001 chr3R_5250001 RAL-181 1360 chr3R 5278090 5278123 chr3R 5278169 5278204 17 81 5.0 4.0 4.5 3.1 114 chr3R 5278090 intron mtd - chr3R 5278147 intron mtd - chr3R 5278204 intron mtd - chr3R_17_5275001 chr3R_5275001 RAL-181 1361 chr3R 5306145 5306162 chr3R 5306214 5306238 14 77 3.5 9.5 6.5 1.9 93 chr3R 5306145 intron mtd - chr3R 5306192 intron mtd - chr3R 5306238 intron mtd - chr3R_14_5305001 chr3R_5305001 RAL-181 1362 chr3R 5338399 5338419 chr3R 5343576 5343593 Rt1c 5 5176 4.5 4.0 4.2 1.0 5194 chr3R 5338399 intron mtd - chr3R 5340996 intron mtd - chr3R 5343593 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-181 1363 chr3R 5445963 5445991 chr3R 5452421 5452451 Burdock 10 6457 1.5 4.0 2.8 2.6 6488 chr3R 5445963 intron CG14669 + chr3R 5449207 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_10_5445001 chr3R_5445001 RAL-181 1364 chr3R 5453333 5453349 chr3R 5453430 5453462 6 106 3.5 3.0 3.2 1.4 129 chr3R 5453333 intron CG14669 + chr3R 5453398 intron CG14669 + chr3R 5453462 intron CG14669 + chr3R_6_5450001 chr3R_5450001 RAL-181 1365 chr3R 5626459 5626466 chr3R 5626550 5626557 7 91 12.0 4.5 8.2 0.8 98 chr3R 5626459 intergenic not near genes chr3R 5626508 intergenic not near genes chr3R 5626557 intergenic not near genes chr3R_7_5625001 chr3R_5625001 RAL-181 1366 chr3R 5627030 5627043 chr3R 5627127 5627159 8 110 1.5 2.0 1.8 2.9 129 chr3R 5627030 intergenic not near genes chr3R 5627094 intergenic not near genes chr3R 5627159 intergenic not near genes chr3R_8_5625001 chr3R_5625001 RAL-181 1367 chr3R 5698108 5698144 chr3R 5698203 5698239 9 91 0.5 4.0 2.2 2.8 131 chr3R 5698108 intron plx + chr3R 5698174 intron plx + chr3R 5698239 intron plx + chr3R_9_5695001 chr3R_5695001 RAL-181 1368 chr3R 5746027 5746046 chr3R 5746268 5746287 pogo 5 241 3.5 9.0 6.2 0.7 260 chr3R 5746027 3` UTR Madm + chr3R 5746157 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-181 1369 chr3R 5775991 5776026 chr3R 5776131 5776158 21 132 8.5 6.5 7.5 2.5 167 chr3R 5775991 intron CG2082 - chr3R 5776074 intron CG2082 - chr3R 5776158 intron CG2082 - chr3R_21_5775001 chr3R_5775001 RAL-181 1370 chr3R 5809131 5809144 chr3R 5809372 5809382 pogo 5 240 1.5 6.0 3.8 1.0 251 chr3R 5809131 3` UTR CG11000 + chr3R 5809256 3` UTR CG11000 + chr3R 5809382 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-181 1371 chr3R 5822397 5822408 chr3R 5823562 5823566 1360 5 1165 5.5 7.0 6.2 0.7 1169 chr3R 5822397 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823566 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-181 1372 chr3R 5927559 5927591 chr3R 5927799 5927830 pogo 12 239 5.0 4.0 4.5 2.2 271 chr3R 5927559 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_12_5925001 chr3R_5925001 RAL-181 1373 chr3R 6015965 6015995 chr3R 6024446 6024476 Tirant 10 8477 2.0 4.5 3.2 2.4 8511 chr3R 6015965 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-181 1374 chr3R 6059883 6059900 chr3R 6059950 6059985 10 77 2.0 3.0 2.5 2.9 102 chr3R 6059883 intergenic not near genes chr3R 6059934 intergenic not near genes chr3R 6059985 intergenic not near genes chr3R_10_6055001 chr3R_6055001 RAL-181 1375 chr3R 6119126 6119149 chr3R 6119212 6119234 4 85 0.0 2.5 1.2 1.8 108 chr3R 6119126 intergenic not near genes chr3R 6119180 intergenic not near genes chr3R 6119234 intergenic not near genes chr3R_4_6115001 chr3R_6115001 RAL-181 1376 chr3R 6158507 6158542 chr3R 6167090 6167123 Tirant 18 8578 6.0 5.0 5.5 2.8 8616 chr3R 6158507 intergenic not near genes chr3R 6162815 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_18_6160001 chr3R_6160001 RAL-181 1377 chr3R 6175186 6175203 chr3R 6182444 6182464 HMS-Beagle2 5 7264 3.5 2.5 3.0 1.2 7278 chr3R 6175186 intergenic Osi1 + chr3R 6178825 intron CR45194 + chr3R 6182464 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-181 1378 chr3R 6191169 6191199 chr3R 6191249 6191277 10 76 6.5 1.5 4.0 2.0 108 chr3R 6191169 intron NPFR + chr3R 6191223 intron NPFR + chr3R 6191277 intron NPFR + chr3R_10_6190001 chr3R_6190001 RAL-181 1379 chr3R 6460212 6460245 chr3R 6460366 6460379 15 146 4.0 3.5 3.8 3.1 167 chr3R 6460212 intergenic not near genes chr3R 6460296 intergenic not near genes chr3R 6460379 intergenic not near genes chr3R_15_6460001 chr3R_6460001 RAL-181 1380 chr3R 6578881 6578910 chr3R 6579001 6579025 8 119 8.0 2.0 5.0 1.3 144 chr3R 6578881 intron dpr11 - chr3R 6578953 intron dpr11 - chr3R 6579025 intron dpr11 - chr3R_8_6575001 chr3R_6575001 RAL-181 1381 chr3R 6737501 6737526 chr3R 6739288 6739302 Doc 14 1786 3.5 4.5 4.0 2.8 1801 chr3R 6737501 intron pb - chr3R 6738402 intron pb - chr3R 6739302 intron pb - chr3R_14_6735001 chr3R_6735001 RAL-181 1382 chr3R 6891240 6891268 chr3R 6891315 6891344 7 70 3.5 2.0 2.8 1.8 104 chr3R 6891240 intergenic not near genes chr3R 6891292 intergenic not near genes chr3R 6891344 intergenic not near genes chr3R_7_6890001 chr3R_6890001 RAL-181 1383 chr3R 6978892 6978910 chr3R 6978977 6978995 4 85 1.5 2.0 1.8 1.4 103 chr3R 6978892 intron Antp - chr3R 6978944 intron Antp - chr3R 6978995 intron Antp - chr3R_4_6975001 chr3R_6975001 RAL-181 1384 chr3R 7092781 7092815 chr3R 7093345 7093379 31 562 4.5 4.5 4.5 5.6 598 chr3R 7092781 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093379 3` UTR CR43685 - chr3R_31_7090001 chr3R_7090001 RAL-181 1385 chr3R 7103284 7103318 chr3R 7103359 7103393 20 73 6.5 5.5 6.0 2.9 109 chr3R 7103284 intron Alh - chr3R 7103338 intron Alh - chr3R 7103393 intron Alh - chr3R_20_7100001 chr3R_7100001 RAL-181 1386 chr3R 7105324 7105349 chr3R 7105406 7105417 16 79 1.0 6.0 3.5 3.6 93 chr3R 7105324 intron Alh - chr3R 7105370 intron Alh - chr3R 7105417 intron Alh - chr3R_16_7105001 chr3R_7105001 RAL-181 1387 chr3R 7132853 7132873 chr3R 7132939 7132950 11 88 1.0 3.5 2.2 3.4 97 chr3R 7132853 intergenic CG31493 + chr3R 7132902 intergenic CG31493 + chr3R 7132950 intergenic CG31493 + chr3R_11_7130001 chr3R_7130001 RAL-181 1388 chr3R 7217469 7217483 chr3R 7217690 7217704 4 221 3.0 7.0 5.0 0.7 235 chr3R 7217469 intergenic CG14605 -,CG14606 - chr3R 7217586 intergenic CG14605 - chr3R 7217704 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-181 1389 chr3R 7217486 7217490 chr3R 7217683 7217710 4 215 2.0 5.5 3.8 0.8 224 chr3R 7217486 intergenic CG14605 -,CG14606 - chr3R 7217598 intergenic CG14605 - chr3R 7217710 3` UTR CG14605 - chr3R_4_7215001 chr3R_7215001 RAL-181 1390 chr3R 7302295 7302327 chr3R 7302387 7302419 14 92 3.0 3.5 3.2 3.3 124 chr3R 7302295 intron rn - chr3R 7302357 intron rn - chr3R 7302419 intron rn - chr3R_14_7300001 chr3R_7300001 RAL-181 1391 chr3R 7404952 7404972 chr3R 7405026 7405048 4 76 0.0 4.5 2.2 1.2 96 chr3R 7404952 intergenic not near genes chr3R 7405000 intergenic not near genes chr3R 7405048 intergenic not near genes chr3R_4_7400001 chr3R_7400001 RAL-181 1392 chr3R 7481845 7481854 chr3R 7481921 7481923 5 75 4.5 5.5 5.0 0.8 78 chr3R 7481845 intergenic not near genes chr3R 7481884 intergenic not near genes chr3R 7481923 intergenic not near genes chr3R_5_7480001 chr3R_7480001 RAL-181 1393 chr3R 7548610 7548632 chr3R 7548686 7548711 5 78 0.5 7.5 4.0 1.0 101 chr3R 7548610 intron alpha-Est1 - chr3R 7548660 intron alpha-Est1 - chr3R 7548711 intron alpha-Est1 - chr3R_5_7545001 chr3R_7545001 RAL-181 1394 chr3R 7556933 7556962 chr3R 7557026 7557055 17 91 3.5 6.5 5.0 2.8 122 chr3R 7556933 intergenic not near genes chr3R 7556994 intergenic not near genes chr3R 7557055 intergenic not near genes chr3R_17_7555001 chr3R_7555001 RAL-181 1395 chr3R 7621549 7621558 chr3R 7621639 7621648 4 90 0.5 4.5 2.5 1.1 99 chr3R 7621549 intron CG34127 - chr3R 7621598 intron CG34127 - chr3R 7621648 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-181 1396 chr3R 7635657 7635676 chr3R 7635738 7635759 4 82 1.5 3.0 2.2 1.2 102 chr3R 7635657 intron CG34127 - chr3R 7635708 intron CG34127 - chr3R 7635759 intron CG34127 - chr3R_4_7635001 chr3R_7635001 RAL-181 1397 chr3R 7660791 7660815 chr3R 7660874 7660906 6 89 4.5 4.5 4.5 1.1 115 chr3R 7660791 intron Nlg1 + chr3R 7660848 intron Nlg1 + chr3R 7660906 intron Nlg1 + chr3R_6_7660001 chr3R_7660001 RAL-181 1398 chr3R 7729465 7729498 chr3R 7737402 7737409 Stalker2 8 7932 5.0 5.0 5.0 1.3 7944 chr3R 7729465 intergenic not near genes chr3R 7733437 intergenic not near genes chr3R 7737409 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-181 1399 chr3R 7857574 7857601 chr3R 7857661 7857685 5 86 4.0 5.5 4.8 0.9 111 chr3R 7857574 3` UTR CG17816 - chr3R 7857630 3` UTR CG17816 - chr3R 7857685 3` UTR CG17816 - chr3R_5_7855001 chr3R_7855001 RAL-181 1400 chr3R 7884667 7884696 chr3R 7884745 7884767 10 74 5.0 5.0 5.0 1.7 100 chr3R 7884667 intron CG17816 - chr3R 7884717 intron CG17816 - chr3R 7884767 intron CG17816 - chr3R_10_7880001 chr3R_7880001 RAL-181 1401 chr3R 8090279 8090288 chr3R 8090455 8090465 8 177 7.5 5.0 6.2 1.1 186 chr3R 8090279 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090465 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 RAL-181 1402 chr3R 8090291 8090297 chr3R 8090453 8090474 4 172 5.0 5.0 5.0 0.7 183 chr3R 8090291 intergenic CR44330 + chr3R 8090382 intergenic CR44330 + chr3R 8090474 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-181 1403 chr3R 8094408 8094429 chr3R 8099711 8099734 Transpac 6 5303 4.0 4.0 4.0 1.2 5326 chr3R 8094408 intron CG7900 + chr3R 8097071 intron CG7900 + chr3R 8099734 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-181 1404 chr3R 8101763 8101789 chr3R 8104847 8104873 G2 10 3081 3.0 1.0 2.0 3.3 3110 chr3R 8101763 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104873 3` UTR CG7900 + chr3R_10_8100001 chr3R_8100001 RAL-181 1405 chr3R 8123466 8123497 chr3R 8123570 8123601 13 102 6.0 6.0 6.0 1.9 135 chr3R 8123466 exon CG7878 + chr3R 8123534 intron CG7878 + chr3R 8123601 exon CG7878 + chr3R_13_8120001 chr3R_8120001 RAL-181 1406 chr3R 8207557 8207585 chr3R 8208401 8208430 F-element 8 842 4.0 7.5 5.8 1.2 873 chr3R 8207557 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208430 intergenic not near genes chr3R_8_8205001 chr3R_8205001 RAL-181 1407 chr3R 8212984 8212990 chr3R 8213307 8213313 4 323 9.0 11.0 10.0 0.4 329 chr3R 8212984 intergenic not near genes chr3R 8213148 intergenic not near genes chr3R 8213313 intergenic not near genes chr3R_4_8210001 chr3R_8210001 RAL-181 1408 chr3R 8212993 8213004 chr3R 8213305 8213323 8 316 6.0 9.5 7.8 0.9 330 chr3R 8212993 intergenic not near genes chr3R 8213158 intergenic not near genes chr3R 8213323 intergenic not near genes chr3R_8_8210001 chr3R_8210001 RAL-181 1409 chr3R 8339246 8339247 chr3R 21907535 21907536 14 13568289 14.0 32.5 23.2 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_14_15120001 chr3R_15120001 RAL-181 1410 chr3R 8363229 8363242 chr3R 8363283 8363305 11 59 3.0 5.5 4.2 2.1 76 chr3R 8363229 exon CG7963 + chr3R 8363267 exon CG7963 + chr3R 8363305 exon CG7963 + chr3R_11_8360001 chr3R_8360001 RAL-181 1411 chr3R 8377956 8377972 chr3R 8378038 8378040 6 78 7.0 3.0 5.0 1.0 84 chr3R 8377956 intron CG45263 - chr3R 8377998 intron CG45263 - chr3R 8378040 intron CG45263 - chr3R_6_8375001 chr3R_8375001 RAL-181 1412 chr3R 8393595 8393605 chr3R 8393654 8393689 15 73 1.5 3.5 2.5 4.3 94 chr3R 8393595 intron CG45263 - chr3R 8393642 intron CG45263 - chr3R 8393689 intron CG45263 - chr3R_15_8390001 chr3R_8390001 RAL-181 1413 chr3R 8403005 8403041 chr3R 8412171 8412207 roo 19 9165 3.5 5.5 4.5 3.5 9202 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_19_8405001 chr3R_8405001 RAL-181 1414 chr3R 8431145 8431180 chr3R 8431232 8431243 20 84 7.5 3.5 5.5 3.1 98 chr3R 8431145 intron CG45263 - chr3R 8431194 intron CG45263 - chr3R 8431243 intron CG45263 - chr3R_20_8430001 chr3R_8430001 RAL-181 1415 chr3R 8439522 8439525 chr3R 8439588 8439601 4 71 11.0 5.0 8.0 0.4 79 chr3R 8439522 intron CG45263 - chr3R 8439562 intron CG45263 - chr3R 8439601 intron CG45263 - chr3R_4_8435001 chr3R_8435001 RAL-181 1416 chr3R 8489857 8489883 chr3R 8490140 8490172 13 288 4.0 5.5 4.8 2.2 315 chr3R 8489857 intergenic not near genes chr3R 8490014 intergenic not near genes chr3R 8490172 intergenic not near genes chr3R_13_8490001 chr3R_8490001 RAL-181 1417 chr3R 8552367 8552401 chr3R 8552447 8552472 11 73 4.0 9.5 6.8 1.4 105 chr3R 8552367 intergenic Or85d + chr3R 8552420 intergenic Or85d + chr3R 8552472 intergenic Or85d + chr3R_11_8550001 chr3R_8550001 RAL-181 1418 chr3R 8570477 8570502 chr3R 8575113 8575122 HMS-Beagle 12 4634 9.0 4.5 6.8 1.5 4645 chr3R 8570477 intergenic not near genes chr3R 8572800 intergenic not near genes chr3R 8575122 intergenic not near genes chr3R_12_8570001 chr3R_8570001 RAL-181 1419 chr3R 8601772 8601799 chr3R 8610923 8610951 roo 16 9149 4.5 6.0 5.2 2.6 9179 chr3R 8601772 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_16_8605001 chr3R_8605001 RAL-181 1420 chr3R 8630911 8630935 chr3R 8631007 8631015 12 100 5.0 2.5 3.8 2.5 104 chr3R 8630911 intergenic not near genes chr3R 8630963 intergenic not near genes chr3R 8631015 intergenic not near genes chr3R_12_8630001 chr3R_8630001 RAL-181 1421 chr3R 8707359 8707385 chr3R 8709797 8709826 jockey 13 2439 8.5 8.0 8.2 1.4 2467 chr3R 8707359 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_13_8705001 chr3R_8705001 RAL-181 1422 chr3R 8743185 8743219 chr3R 8743267 8743287 24 80 4.5 8.0 6.2 3.3 102 chr3R 8743185 intron CG9801 - chr3R 8743236 intron CG9801 - chr3R 8743287 intron CG9801 - chr3R_24_8740001 chr3R_8740001 RAL-181 1423 chr3R 8875537 8875572 chr3R 8875613 8875629 12 67 4.0 5.0 4.5 2.2 92 chr3R 8875537 intron pyd - chr3R 8875583 intron pyd - chr3R 8875629 intron pyd - chr3R_12_8875001 chr3R_8875001 RAL-181 1424 chr3R 8894870 8894902 chr3R 8896026 8896058 1360 8 1154 2.0 2.5 2.2 2.5 1188 chr3R 8894870 intron pyd - chr3R 8895464 intron pyd - chr3R 8896058 intron pyd - chr3R_8_8895001 chr3R_8895001 RAL-181 1425 chr3R 8917893 8917911 chr3R 8917969 8917991 5 79 1.5 7.0 4.2 1.0 98 chr3R 8917893 intron pyd - chr3R 8917942 intron pyd - chr3R 8917991 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-181 1426 chr3R 8932876 8932911 chr3R 8933109 8933144 19 231 5.0 7.0 6.0 2.7 268 chr3R 8932876 intergenic not near genes chr3R 8933010 intergenic not near genes chr3R 8933144 intergenic not near genes chr3R_19_8930001 chr3R_8930001 RAL-181 1427 chr3R 9036711 9036746 chr3R 9036807 9036841 7 96 0.5 2.5 1.5 2.8 130 chr3R 9036711 intron neur - chr3R 9036776 intron neur - chr3R 9036841 intron neur - chr3R_7_9035001 chr3R_9035001 RAL-181 1428 chr3R 9043740 9043753 chr3R 9043824 9043841 6 86 8.5 5.5 7.0 0.8 101 chr3R 9043740 intron Nmdmc - chr3R 9043790 intron Nmdmc - chr3R 9043841 intron Nmdmc - chr3R_6_9040001 chr3R_9040001 RAL-181 1429 chr3R 9043758 9043771 chr3R 9043823 9043859 9 75 3.0 5.5 4.2 1.7 101 chr3R 9043758 intron Nmdmc - chr3R 9043808 intron Nmdmc - chr3R 9043859 intron Nmdmc - chr3R_9_9040001 chr3R_9040001 RAL-181 1430 chr3R 9108872 9108881 chr3R 9108948 9108957 4 76 4.0 4.5 4.2 0.8 85 chr3R 9108872 intron pum - chr3R 9108914 intron pum - chr3R 9108957 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-181 1431 chr3R 9118877 9118899 chr3R 9119226 9119256 12 352 2.5 2.5 2.5 3.4 379 chr3R 9118877 intron pum - chr3R 9119066 intron pum - chr3R 9119256 intron pum - chr3R_12_9115001 chr3R_9115001 RAL-181 1432 chr3R 9141139 9141170 chr3R 9141223 9141254 14 82 2.5 6.5 4.5 2.5 115 chr3R 9141139 intron pum - chr3R 9141196 intron pum - chr3R 9141254 intron pum - chr3R_14_9140001 chr3R_9140001 RAL-181 1433 chr3R 9204259 9204280 chr3R 9204339 9204367 8 84 5.0 4.5 4.8 1.4 108 chr3R 9204259 intron pum - chr3R 9204313 intron pum - chr3R 9204367 intron pum - chr3R_8_9200001 chr3R_9200001 RAL-181 1434 chr3R 9278777 9278812 chr3R 9284037 9284053 Rt1a 17 5258 2.5 10.5 6.5 2.3 5276 chr3R 9278777 intergenic not near genes chr3R 9281415 intergenic not near genes chr3R 9284053 intergenic not near genes chr3R_17_9280001 chr3R_9280001 RAL-181 1435 chr3R 9319570 9319609 chr3R 9320005 9320027 jockey 12 433 3.5 4.5 4.0 2.4 457 chr3R 9319570 intron CG8861 - chr3R 9319798 intron CG8861 - chr3R 9320027 intron CG8861 - chr3R_12_9315001 chr3R_9315001 RAL-181 1436 chr3R 9451542 9451569 chr3R 9451619 9451631 10 75 4.5 3.0 3.8 2.1 89 chr3R 9451542 3` UTR ps + chr3R 9451586 3` UTR ps + chr3R 9451631 3` UTR ps + chr3R_10_9450001 chr3R_9450001 RAL-181 1437 chr3R 9524017 9524047 chr3R 9524105 9524134 10 87 1.0 2.0 1.5 4.0 117 chr3R 9524017 intron CG8176 + chr3R 9524076 intron CG8176 + chr3R 9524134 intron CG8176 + chr3R_10_9520001 chr3R_9520001 RAL-181 1438 chr3R 9550591 9550624 chr3R 9550685 9550718 7 94 4.5 1.5 3.0 1.8 127 chr3R 9550591 intron,intron mura -,CR42549 - chr3R 9550654 intron,intron mura -,CR42549 - chr3R 9550718 intron,intron mura -,CR42549 - chr3R_7_9550001 chr3R_9550001 RAL-181 1439 chr3R 9586694 9586722 chr3R 9586786 9586814 7 91 4.0 2.5 3.2 1.7 120 chr3R 9586694 intergenic CG8301 +,P58IPK + chr3R 9586754 intergenic CG8301 +,P58IPK + chr3R 9586814 intergenic P58IPK +,CG8301 + chr3R_7_9585001 chr3R_9585001 RAL-181 1440 chr3R 9601475 9601493 chr3R 9601592 9601611 6 117 4.0 6.5 5.2 1.0 136 chr3R 9601475 intron CG8312 + chr3R 9601543 intron CG8312 + chr3R 9601611 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-181 1441 chr3R 9610852 9610872 chr3R 9610994 9611011 8 141 2.0 5.5 3.8 1.7 159 chr3R 9610852 intron CG8312 + chr3R 9610932 intron CG8312 + chr3R 9611011 intron CG8312 + chr3R_8_9610001 chr3R_9610001 RAL-181 1442 chr3R 9647504 9647532 chr3R 9647750 9647778 12 244 9.0 5.5 7.2 1.5 274 chr3R 9647504 intron Dh44 + chr3R 9647641 intron Dh44 + chr3R 9647778 intron Dh44 + chr3R_12_9645001 chr3R_9645001 RAL-181 1443 chr3R 9699973 9700004 chr3R 9700062 9700093 1360 15 88 7.5 4.5 6.0 2.1 120 chr3R 9699973 intron Unc-115a - chr3R 9700033 intron Unc-115a - chr3R 9700093 intron Unc-115a - chr3R_15_9700001 chr3R_9700001 RAL-181 1444 chr3R 9836869 9836901 chr3R 9836956 9836989 19 86 7.5 7.0 7.2 2.3 120 chr3R 9836869 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9836989 intron Teh1 - chr3R_19_9835001 chr3R_9835001 RAL-181 1445 chr3R 9898788 9898819 chr3R 9898880 9898910 12 90 6.0 2.0 4.0 2.4 122 chr3R 9898788 intron Glut4EF + chr3R 9898849 intron Glut4EF + chr3R 9898910 intron Glut4EF + chr3R_12_9895001 chr3R_9895001 RAL-181 1446 chr3R 9914990 9915004 chr3R 9915087 9915096 6 96 5.5 0.5 3.0 1.5 106 chr3R 9914990 intron Glut4EF + chr3R 9915043 intron Glut4EF + chr3R 9915096 intron Glut4EF + chr3R_6_9915001 chr3R_9915001 RAL-181 1447 chr3R 10085953 10085965 chr3R 10086251 10086263 13 296 5.0 5.0 5.0 2.2 310 chr3R 10085953 intron CR45054 + chr3R 10086108 intron CR45054 + chr3R 10086263 intron CR45054 + chr3R_13_10085001 chr3R_10085001 RAL-181 1448 chr3R 10085966 10085981 chr3R 10086248 10086270 11 295 2.5 4.5 3.5 2.4 304 chr3R 10085966 intron CR45054 + chr3R 10086118 intron CR45054 + chr3R 10086270 intron CR45054 + chr3R_11_10085001 chr3R_10085001 RAL-181 1449 chr3R 10187056 10187080 chr3R 10187133 10187155 8 77 3.5 0.5 2.0 2.7 99 chr3R 10187056 intron CG12814 - chr3R 10187106 intron CG12814 - chr3R 10187155 intron CG12814 - chr3R_8_10185001 chr3R_10185001 RAL-181 1450 chr3R 10231786 10231808 chr3R 10237363 10237379 mdg3 6 5576 0.0 5.5 2.8 1.6 5593 chr3R 10231786 intron CG42795 + chr3R 10234582 intron CG42795 + chr3R 10237379 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-181 1451 chr3R 10275559 10275586 chr3R 10275636 10275663 9 77 1.0 1.5 1.2 4.1 104 chr3R 10275559 intron CG43143 + chr3R 10275611 intron CG43143 + chr3R 10275663 intron CG43143 + chr3R_9_10275001 chr3R_10275001 RAL-181 1452 chr3R 10308367 10308395 chr3R 10308452 10308481 9 85 2.0 1.5 1.8 3.2 114 chr3R 10308367 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308424 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308481 3` UTR CG6293 - chr3R_9_10305001 chr3R_10305001 RAL-181 1453 chr3R 10426294 10426300 chr3R 10426564 10426576 4 272 5.5 8.0 6.8 0.5 282 chr3R 10426294 intergenic not near genes chr3R 10426435 intergenic not near genes chr3R 10426576 intergenic not near genes chr3R_4_10425001 chr3R_10425001 RAL-181 1454 chr3R 10593449 10593458 chr3R 10593515 10593542 5 79 2.5 5.0 3.8 1.0 93 chr3R 10593449 intron hth - chr3R 10593496 intron hth - chr3R 10593542 intron hth - chr3R_5_10590001 chr3R_10590001 RAL-181 1455 chr3R 10651811 10651832 chr3R 10651910 10651915 5 92 3.5 2.0 2.8 1.3 104 chr3R 10651811 intergenic not near genes chr3R 10651863 intergenic not near genes chr3R 10651915 intergenic not near genes chr3R_5_10650001 chr3R_10650001 RAL-181 1456 chr3R 10687691 10687724 chr3R 10687858 10687879 20 164 7.5 7.0 7.2 2.4 188 chr3R 10687691 intron Skeletor + chr3R 10687785 intron Skeletor + chr3R 10687879 intron Skeletor + chr3R_20_10685001 chr3R_10685001 RAL-181 1457 chr3R 10723770 10723791 chr3R 10723862 10723862 6 88 4.0 2.0 3.0 1.5 92 chr3R 10723770 intergenic not near genes chr3R 10723816 intergenic not near genes chr3R 10723862 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-181 1458 chr3R 10727653 10727677 chr3R 10727721 10727749 16 77 4.0 7.0 5.5 2.5 96 chr3R 10727653 intergenic not near genes chr3R 10727701 intergenic not near genes chr3R 10727749 intergenic not near genes chr3R_16_10725001 chr3R_10725001 RAL-181 1459 chr3R 10732329 10732338 chr3R 10733199 10733210 5 872 2.5 3.5 3.0 1.2 881 chr3R 10732329 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733210 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-181 1460 chr3R 10745426 10745452 chr3R 10745512 10745539 10 87 6.0 5.0 5.5 1.5 113 chr3R 10745426 intron TkR86C - chr3R 10745482 intron TkR86C - chr3R 10745539 intron TkR86C - chr3R_10_10745001 chr3R_10745001 RAL-181 1461 chr3R 10804183 10804208 chr3R 10811715 10811740 17.6 8 7531 0.5 2.5 1.5 3.2 7557 chr3R 10804183 intergenic CG14692 - chr3R 10807962 intergenic not near genes chr3R 10811740 3` UTR CG14693 - chr3R_8_10805001 chr3R_10805001 RAL-181 1462 chr3R 10886875 10886905 chr3R 10886955 10886983 8 80 3.5 3.0 3.2 1.9 108 chr3R 10886875 intron Leash + chr3R 10886929 intron Leash + chr3R 10886983 intron Leash + chr3R_8_10885001 chr3R_10885001 RAL-181 1463 chr3R 10919683 10919715 chr3R 10919761 10919793 12 77 4.5 2.5 3.5 2.7 110 chr3R 10919683 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_12_10915001 chr3R_10915001 RAL-181 1464 chr3R 10920048 10920078 chr3R 10920126 10920156 8 77 2.5 6.5 4.5 1.5 108 chr3R 10920048 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_8_10920001 chr3R_10920001 RAL-181 1465 chr3R 10927277 10927307 chr3R 10927605 10927634 18 323 3.5 6.0 4.8 3.1 357 chr3R 10927277 intergenic not near genes chr3R 10927456 intergenic not near genes chr3R 10927634 intergenic not near genes chr3R_18_10925001 chr3R_10925001 RAL-181 1466 chr3R 10979650 10979687 chr3R 10979732 10979769 10 82 3.5 3.0 3.2 2.4 119 chr3R 10979650 intron CG34114 + chr3R 10979710 intron CG34114 + chr3R 10979769 intron CG34114 + chr3R_10_10975001 chr3R_10975001 RAL-181 1467 chr3R 11010765 11010772 chr3R 11010846 11010849 4 86 2.5 0.0 1.2 1.8 84 chr3R 11010765 intron CG34114 + chr3R 11010807 intron CG34114 + chr3R 11010849 intron CG34114 + chr3R_4_11010001 chr3R_11010001 RAL-181 1468 chr3R 11085462 11085488 chr3R 11085539 11085562 6 75 0.0 2.0 1.0 3.0 100 chr3R 11085462 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085562 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-181 1469 chr3R 11102324 11102355 chr3R 11102405 11102436 18 78 6.5 8.0 7.2 2.2 112 chr3R 11102324 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_18_11100001 chr3R_11100001 RAL-181 1470 chr3R 11130116 11130146 chr3R 11130205 11130224 10 86 2.5 0.0 1.2 4.5 108 chr3R 11130116 intergenic not near genes chr3R 11130170 intergenic not near genes chr3R 11130224 intergenic not near genes chr3R_10_11130001 chr3R_11130001 RAL-181 1471 chr3R 11151667 11151689 chr3R 11156564 11156583 4 4894 32.0 13.5 22.8 0.2 4916 chr3R 11151667 3` UTR Ugt86Di - chr3R 11154125 intergenic Ugt86Di -,Ugt86Dc + chr3R 11156583 intergenic Ugt86Dc + chr3R_4_11150001 chr3R_11150001 RAL-181 1472 chr3R 11174607 11174612 chr3R 11175315 11175326 4 712 33.0 34.5 33.8 0.1 719 chr3R 11174607 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175326 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-181 1473 chr3R 11263515 11263528 chr3R 11263586 11263611 8 79 1.5 5.5 3.5 1.8 96 chr3R 11263515 intergenic not near genes chr3R 11263563 intergenic not near genes chr3R 11263611 intergenic not near genes chr3R_8_11260001 chr3R_11260001 RAL-181 1474 chr3R 11379237 11379268 chr3R 11388392 11388423 roo 8 9150 2.0 3.5 2.8 2.1 9186 chr3R 11379237 intron pros + chr3R 11383830 intron pros + chr3R 11388423 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-181 1475 chr3R 11408752 11408786 chr3R 11408846 11408875 17 90 9.5 7.5 8.5 1.8 123 chr3R 11408752 3` UTR mRpL40 + chr3R 11408814 3` UTR mgr - chr3R 11408875 3` UTR mgr - chr3R_17_11405001 chr3R_11405001 RAL-181 1476 chr3R 11452080 11452094 chr3R 11452167 11452181 7 86 5.5 6.5 6.0 1.0 101 chr3R 11452080 intron CG17230 + chr3R 11452130 intron CG17230 + chr3R 11452181 intron CG17230 + chr3R_7_11450001 chr3R_11450001 RAL-181 1477 chr3R 11452096 11452105 chr3R 11452165 11452191 6 81 1.0 6.0 3.5 1.3 95 chr3R 11452096 intron CG17230 + chr3R 11452144 intron CG17230 + chr3R 11452191 intron CG17230 + chr3R_6_11450001 chr3R_11450001 RAL-181 1478 chr3R 11476952 11476973 chr3R 11477054 11477075 6 100 2.5 2.5 2.5 1.7 123 chr3R 11476952 intergenic not near genes chr3R 11477014 intergenic not near genes chr3R 11477075 intergenic not near genes chr3R_6_11475001 chr3R_11475001 RAL-181 1479 chr3R 11670987 11671015 chr3R 11671065 11671093 16 78 5.5 2.5 4.0 3.2 106 chr3R 11670987 intron CG42327 + chr3R 11671040 intron CG42327 + chr3R 11671093 intron CG42327 + chr3R_16_11670001 chr3R_11670001 RAL-181 1480 chr3R 11694724 11694749 chr3R 11694817 11694842 9 93 1.5 5.5 3.5 2.0 118 chr3R 11694724 intergenic Fer3 - chr3R 11694783 intergenic Fer3 - chr3R 11694842 intergenic not near genes chr3R_9_11690001 chr3R_11690001 RAL-181 1481 chr3R 11708643 11708656 chr3R 11708851 11708864 4 208 2.5 2.0 2.2 1.2 221 chr3R 11708643 intergenic not near genes chr3R 11708754 intergenic not near genes chr3R 11708864 intergenic not near genes chr3R_4_11705001 chr3R_11705001 RAL-181 1482 chr3R 11763931 11763946 chr3R 11764011 11764026 6 78 3.5 11.0 7.2 0.7 95 chr3R 11763931 5` UTR Lk6 - chr3R 11763978 5` UTR Lk6 - chr3R 11764026 5` UTR Lk6 - chr3R_6_11760001 chr3R_11760001 RAL-181 1483 chr3R 11841064 11841097 chr3R 11846250 11846288 BS 12 5189 3.5 4.0 3.8 2.5 5224 chr3R 11841064 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_12_11840001 chr3R_11840001 RAL-181 1484 chr3R 11916442 11916461 chr3R 11916503 11916535 7 75 2.0 3.5 2.8 1.8 93 chr3R 11916442 intron Cad87A - chr3R 11916488 intron Cad87A - chr3R 11916535 intron Cad87A - chr3R_7_11915001 chr3R_11915001 RAL-181 1485 chr3R 11928221 11928254 chr3R 11928303 11928336 20 80 6.0 5.5 5.8 2.9 115 chr3R 11928221 intron Cad87A - chr3R 11928278 intron Cad87A - chr3R 11928336 intron Cad87A - chr3R_20_11925001 chr3R_11925001 RAL-181 1486 chr3R 11938008 11938028 chr3R 11938080 11938107 12 74 5.0 2.5 3.8 2.5 99 chr3R 11938008 intron Cad87A - chr3R 11938058 intron Cad87A - chr3R 11938107 intron Cad87A - chr3R_12_11935001 chr3R_11935001 RAL-181 1487 chr3R 11945385 11945404 chr3R 11945483 11945501 6 98 4.0 2.0 3.0 1.5 116 chr3R 11945385 intron Cad87A - chr3R 11945443 intron Cad87A - chr3R 11945501 intron Cad87A - chr3R_6_11945001 chr3R_11945001 RAL-181 1488 chr3R 12022906 12022915 chr3R 12025077 12025092 pogo 7 2176 2.5 13.0 7.8 0.8 2186 chr3R 12022906 intergenic not near genes chr3R 12023999 intergenic not near genes chr3R 12025092 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-181 1489 chr3R 12045182 12045200 chr3R 12045257 12045276 5 76 1.0 3.0 2.0 1.7 94 chr3R 12045182 intergenic not near genes chr3R 12045229 intergenic not near genes chr3R 12045276 intergenic not near genes chr3R_5_12045001 chr3R_12045001 RAL-181 1490 chr3R 12080864 12080898 chr3R 12080941 12080976 9 76 6.0 3.0 4.5 1.6 112 chr3R 12080864 intron CG14741 - chr3R 12080920 intron CG14741 - chr3R 12080976 intron CG14741 - chr3R_9_12080001 chr3R_12080001 RAL-181 1491 chr3R 12214349 12214371 chr3R 12214431 12214447 15 87 3.5 4.5 4.0 3.0 98 chr3R 12214349 3` UTR CG4848 - chr3R 12214398 3` UTR CG4848 - chr3R 12214447 3` UTR CG4848 - chr3R_15_12210001 chr3R_12210001 RAL-181 1492 chr3R 12247141 12247174 chr3R 12247225 12247259 8 82 3.5 2.0 2.8 2.1 118 chr3R 12247141 intergenic not near genes chr3R 12247200 intergenic not near genes chr3R 12247259 intergenic not near genes chr3R_8_12245001 chr3R_12245001 RAL-181 1493 chr3R 12299805 12299835 chr3R 12299897 12299928 10 90 4.5 3.0 3.8 2.1 123 chr3R 12299805 intron svp + chr3R 12299866 intron svp + chr3R 12299928 intron svp + chr3R_10_12295001 chr3R_12295001 RAL-181 1494 chr3R 12314229 12314252 chr3R 12314341 12314366 10 112 6.0 7.0 6.5 1.3 137 chr3R 12314229 intergenic not near genes chr3R 12314298 intergenic not near genes chr3R 12314366 intergenic not near genes chr3R_10_12310001 chr3R_12310001 RAL-181 1495 chr3R 12314257 12314261 chr3R 12314340 12314372 4 100 5.0 6.5 5.8 0.6 115 chr3R 12314257 intergenic not near genes chr3R 12314314 intergenic not near genes chr3R 12314372 intergenic not near genes chr3R_4_12310001 chr3R_12310001 RAL-181 1496 chr3R 12328161 12328182 chr3R 12328272 12328293 10 109 4.5 1.0 2.8 2.6 132 chr3R 12328161 intergenic CR45584 + chr3R 12328227 intergenic CR45584 + chr3R 12328293 intergenic CR45584 + chr3R_10_12325001 chr3R_12325001 RAL-181 1497 chr3R 12344131 12344158 chr3R 12344208 12344215 17 73 0.5 2.5 1.5 6.8 84 chr3R 12344131 intergenic not near genes chr3R 12344173 intergenic not near genes chr3R 12344215 intergenic not near genes chr3R_17_12340001 chr3R_12340001 RAL-181 1498 chr3R 12392890 12392899 chr3R 12392990 12392999 4 100 4.5 12.5 8.5 0.4 109 chr3R 12392890 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392944 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392999 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-181 1499 chr3R 12436458 12436483 chr3R 12436542 12436570 13 84 4.0 1.0 2.5 3.7 112 chr3R 12436458 exon Desat2 + chr3R 12436514 exon Desat2 + chr3R 12436570 exon Desat2 + chr3R_13_12435001 chr3R_12435001 RAL-181 1500 chr3R 12520694 12520716 chr3R 12520776 12520786 13 83 9.5 9.0 9.2 1.3 92 chr3R 12520694 intron Octbeta3R - chr3R 12520740 intron Octbeta3R - chr3R 12520786 intron Octbeta3R - chr3R_13_12520001 chr3R_12520001 RAL-181 1501 chr3R 12522372 12522384 chr3R 12522437 12522470 6 79 7.5 4.0 5.8 0.9 98 chr3R 12522372 5` UTR Octbeta3R - chr3R 12522421 5` UTR Octbeta3R - chr3R 12522470 5` UTR Octbeta3R - chr3R_6_12520001 chr3R_12520001 RAL-181 1502 chr3R 12602402 12602417 chr3R 12602480 12602491 6 76 8.5 7.0 7.8 0.7 89 chr3R 12602402 intergenic not near genes chr3R 12602446 intergenic not near genes chr3R 12602491 intergenic not near genes chr3R_6_12600001 chr3R_12600001 RAL-181 1503 chr3R 12628626 12628631 chr3R 12628698 12628710 6 78 11.5 8.0 9.8 0.6 84 chr3R 12628626 intron Snx3 + chr3R 12628668 intron Snx3 + chr3R 12628710 intron Snx3 + chr3R_6_12625001 chr3R_12625001 RAL-181 1504 chr3R 12685416 12685451 chr3R 12685590 12685622 11 168 1.5 3.0 2.2 3.4 206 chr3R 12685416 intron kar - chr3R 12685519 intron kar - chr3R 12685622 intron kar - chr3R_11_12685001 chr3R_12685001 RAL-181 1505 chr3R 12733488 12733502 chr3R 12733553 12733579 7 71 5.0 2.5 3.8 1.5 91 chr3R 12733488 intergenic not near genes chr3R 12733534 intergenic not near genes chr3R 12733579 intergenic not near genes chr3R_7_12730001 chr3R_12730001 RAL-181 1506 chr3R 12876953 12876975 chr3R 12877036 12877058 6 83 3.0 5.5 4.2 1.2 105 chr3R 12876953 intergenic not near genes chr3R 12877006 intergenic not near genes chr3R 12877058 intergenic not near genes chr3R_6_12875001 chr3R_12875001 RAL-181 1507 chr3R 12920155 12920165 chr3R 12925356 12925368 copia 6 5202 5.5 3.0 4.2 1.2 5213 chr3R 12920155 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925368 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-181 1508 chr3R 12920166 12920185 chr3R 12925355 12925388 copia 6 5200 3.0 3.0 3.0 1.5 5222 chr3R 12920166 intron beat-Vb + chr3R 12922777 intron beat-Vb + chr3R 12925388 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-181 1509 chr3R 13059962 13059975 chr3R 13060156 13060170 6 194 1.0 1.0 1.0 3.0 208 chr3R 13059962 intron sim + chr3R 13060066 intron sim + chr3R 13060170 intron sim + chr3R_6_13060001 chr3R_13060001 RAL-181 1510 chr3R 13061895 13061913 chr3R 13061986 13061993 4 90 2.5 4.0 3.2 1.0 98 chr3R 13061895 intron sim + chr3R 13061944 intron sim + chr3R 13061993 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-181 1511 chr3R 13067111 13067133 chr3R 13067183 13067209 8 74 0.0 1.0 0.5 5.3 98 chr3R 13067111 intron sim + chr3R 13067160 intron sim + chr3R 13067209 intron sim + chr3R_8_13065001 chr3R_13065001 RAL-181 1512 chr3R 13075365 13075386 chr3R 13075441 13075466 5 78 3.5 2.5 3.0 1.2 101 chr3R 13075365 intron sim + chr3R 13075416 intron sim + chr3R 13075466 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-181 1513 chr3R 13104419 13104420 chr3R 21907534 21907535 4 8803116 28.5 33.0 30.8 0.1 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-181 1514 chr3R 13114398 13114429 chr3R 13114490 13114508 14 91 5.5 3.0 4.2 2.7 110 chr3R 13114398 intron timeout + chr3R 13114453 intron timeout + chr3R 13114508 intron timeout + chr3R_14_13110001 chr3R_13110001 RAL-181 1515 chr3R 13143042 13143058 chr3R 13148616 13148621 mdg3 7 5570 5.5 10.5 8.0 0.8 5579 chr3R 13143042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148621 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-181 1516 chr3R 13171905 13171929 chr3R 13172815 13172840 6 912 38.0 16.0 27.0 0.2 935 chr3R 13171905 intergenic not near genes chr3R 13172372 intergenic not near genes chr3R 13172840 intergenic not near genes chr3R_6_13170001 chr3R_13170001 RAL-181 1517 chr3R 13173443 13173470 chr3R 13173525 13173550 9 79 3.5 2.5 3.0 2.2 107 chr3R 13173443 intergenic not near genes chr3R 13173496 intergenic not near genes chr3R 13173550 intergenic not near genes chr3R_9_13170001 chr3R_13170001 RAL-181 1518 chr3R 13195951 13195981 chr3R 13196045 13196076 11 94 7.0 4.0 5.5 1.7 125 chr3R 13195951 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196076 intergenic not near genes chr3R_11_13195001 chr3R_13195001 RAL-181 1519 chr3R 13248657 13248680 chr3R 13248754 13248777 6 97 4.5 4.0 4.2 1.2 120 chr3R 13248657 intron Ace - chr3R 13248717 intron Ace - chr3R 13248777 intron Ace - chr3R_6_13245001 chr3R_13245001 RAL-181 1520 chr3R 13260735 13260745 chr3R 13260866 13260876 5 130 8.5 12.0 10.2 0.4 141 chr3R 13260735 intron CG11686 + chr3R 13260806 intron CG11686 + chr3R 13260876 intron CG11686 + chr3R_5_13260001 chr3R_13260001 RAL-181 1521 chr3R 13274212 13274249 chr3R 13274291 13274321 16 75 2.0 3.0 2.5 4.6 109 chr3R 13274212 intergenic not near genes chr3R 13274266 intergenic not near genes chr3R 13274321 intergenic not near genes chr3R_16_13270001 chr3R_13270001 RAL-181 1522 chr3R 13305656 13305691 chr3R 13305743 13305773 10 86 2.0 4.5 3.2 2.4 117 chr3R 13305656 intron CG32473 + chr3R 13305714 intron CG32473 + chr3R 13305773 intron CG32473 + chr3R_10_13305001 chr3R_13305001 RAL-181 1523 chr3R 13306122 13306152 chr3R 13306508 13306512 7 382 3.0 2.5 2.8 1.8 390 chr3R 13306122 intron CG32473 + chr3R 13306317 intron CG32473 + chr3R 13306512 intron CG32473 + chr3R_7_13305001 chr3R_13305001 RAL-181 1524 chr3R 13314096 13314130 chr3R 13318884 13318918 Doc 7 4782 1.5 3.0 2.2 2.2 4822 chr3R 13314096 intergenic not near genes chr3R 13316507 intergenic not near genes chr3R 13318918 intergenic CG45080 - chr3R_7_13315001 chr3R_13315001 RAL-181 1525 chr3R 13323957 13323987 chr3R 13324068 13324096 9 109 4.0 6.5 5.2 1.5 139 chr3R 13323957 intergenic not near genes chr3R 13324026 intergenic not near genes chr3R 13324096 intergenic not near genes chr3R_9_13320001 chr3R_13320001 RAL-181 1526 chr3R 13326938 13326958 chr3R 13327033 13327053 10 94 2.0 5.5 3.8 2.1 115 chr3R 13326938 intergenic not near genes chr3R 13326996 intergenic not near genes chr3R 13327053 intergenic not near genes chr3R_10_13325001 chr3R_13325001 RAL-181 1527 chr3R 13356089 13356125 chr3R 13356174 13356207 13 84 3.5 1.5 2.5 3.7 118 chr3R 13356089 intergenic not near genes chr3R 13356148 intergenic not near genes chr3R 13356207 intergenic not near genes chr3R_13_13355001 chr3R_13355001 RAL-181 1528 chr3R 13391631 13391664 chr3R 13391709 13391742 16 77 3.5 5.5 4.5 2.9 111 chr3R 13391631 intron CCHa2 - chr3R 13391686 intron CCHa2 - chr3R 13391742 intron CCHa2 - chr3R_16_13390001 chr3R_13390001 RAL-181 1529 chr3R 13603064 13603072 chr3R 13603155 13603163 4 89 5.0 7.0 6.0 0.6 99 chr3R 13603064 intergenic not near genes chr3R 13603114 intergenic not near genes chr3R 13603163 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-181 1530 chr3R 13673300 13673309 chr3R 13673382 13673394 8 84 7.0 15.0 11.0 0.7 94 chr3R 13673300 intron Task6 - chr3R 13673347 intron Task6 - chr3R 13673394 intron Task6 - chr3R_8_13670001 chr3R_13670001 RAL-181 1531 chr3R 13771049 13771061 chr3R 13771124 13771137 4 75 8.0 5.5 6.8 0.5 88 chr3R 13771049 intergenic Cht5 +,CG9297 + chr3R 13771093 intergenic Cht5 +,CG9297 + chr3R 13771137 intergenic CG9297 +,Cht5 + chr3R_4_13770001 chr3R_13770001 RAL-181 1532 chr3R 13771064 13771081 chr3R 13771123 13771154 7 73 5.0 5.0 5.0 1.2 90 chr3R 13771064 intergenic Cht5 +,CG9297 + chr3R 13771109 intergenic Cht5 +,CG9297 + chr3R 13771154 intergenic CG9297 +,Cht5 + chr3R_7_13770001 chr3R_13770001 RAL-181 1533 chr3R 13842371 13842400 chr3R 13842463 13842491 16 92 1.5 6.0 3.8 3.3 120 chr3R 13842371 intergenic not near genes chr3R 13842431 intergenic not near genes chr3R 13842491 intergenic not near genes chr3R_16_13840001 chr3R_13840001 RAL-181 1534 chr3R 13850335 13850340 chr3R 13850415 13850428 7 86 0.0 9.0 4.5 1.3 93 chr3R 13850335 intergenic not near genes chr3R 13850382 intergenic not near genes chr3R 13850428 intergenic not near genes chr3R_7_13850001 chr3R_13850001 RAL-181 1535 chr3R 13864743 13864769 chr3R 13864822 13864848 16 74 3.0 6.0 4.5 2.9 105 chr3R 13864743 intergenic not near genes chr3R 13864796 intergenic not near genes chr3R 13864848 intergenic not near genes chr3R_16_13860001 chr3R_13860001 RAL-181 1536 chr3R 14058137 14058149 chr3R 14058248 14058268 4 117 0.0 1.5 0.8 2.2 131 chr3R 14058137 intron foxo + chr3R 14058202 intron foxo + chr3R 14058268 intron foxo + chr3R_4_14055001 chr3R_14055001 RAL-181 1537 chr3R 14166680 14166700 chr3R 14167324 14167341 10 642 4.0 7.5 5.8 1.5 661 chr3R 14166680 3` UTR Dop1R1 - chr3R 14167010 3` UTR Dop1R1 - chr3R 14167341 3` UTR Dop1R1 - chr3R_10_14165001 chr3R_14165001 RAL-181 1538 chr3R 14180831 14180840 chr3R 14185576 14185605 F-element 5 4761 1.0 3.0 2.0 1.7 4774 chr3R 14180831 intron Dop1R1 - chr3R 14183218 intron Dop1R1 - chr3R 14185605 intron Dop1R1 - chr3R_5_14180001 chr3R_14180001 RAL-181 1539 chr3R 14194426 14194459 chr3R 14203575 14203608 roo 11 9149 8.5 3.5 6.0 1.6 9182 chr3R 14194426 intron Dop1R1 - chr3R 14199017 intron Dop1R1 - chr3R 14203608 intron Dop1R1 - chr3R_11_14195001 chr3R_14195001 RAL-181 1540 chr3R 14246396 14246413 chr3R 14247892 14247896 jockey 8 1493 7.5 4.5 6.0 1.1 1500 chr3R 14246396 intergenic not near genes chr3R 14247146 intergenic not near genes chr3R 14247896 intergenic not near genes chr3R_8_14245001 chr3R_14245001 RAL-181 1541 chr3R 14384633 14384643 chr3R 14384700 14384733 6 85 1.0 0.0 0.5 4.0 100 chr3R 14384633 intergenic not near genes chr3R 14384683 intergenic not near genes chr3R 14384733 intergenic not near genes chr3R_6_14380001 chr3R_14380001 RAL-181 1542 chr3R 14497414 14497438 chr3R 14497495 14497508 8 78 5.0 1.5 3.2 1.9 94 chr3R 14497414 intron CR44177 + chr3R 14497461 intron CR44177 + chr3R 14497508 intron CR44177 + chr3R_8_14495001 chr3R_14495001 RAL-181 1543 chr3R 14527403 14527415 chr3R 14527479 14527490 8 76 12.5 3.5 8.0 0.9 87 chr3R 14527403 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527490 intron Pde6 - chr3R_8_14525001 chr3R_14525001 RAL-181 1544 chr3R 14547626 14547641 chr3R 14547812 14547827 6 186 5.5 11.0 8.2 0.7 201 chr3R 14547626 intron Pde6 - chr3R 14547726 intron Pde6 - chr3R 14547827 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-181 1545 chr3R 14577957 14577986 chr3R 14578073 14578101 12 115 3.5 4.5 4.0 2.4 144 chr3R 14577957 intron stumps + chr3R 14578029 intron stumps + chr3R 14578101 intron stumps + chr3R_12_14575001 chr3R_14575001 RAL-181 1546 chr3R 14579372 14579383 chr3R 14579437 14579472 5 80 4.0 3.5 3.8 1.0 100 chr3R 14579372 intron stumps + chr3R 14579422 intron stumps + chr3R 14579472 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-181 1547 chr3R 14840949 14840973 chr3R 14841030 14841058 10 80 6.5 7.0 6.8 1.3 109 chr3R 14840949 intron btsz - chr3R 14841004 intron btsz - chr3R 14841058 intron btsz - chr3R_10_14840001 chr3R_14840001 RAL-181 1548 chr3R 14911564 14911597 chr3R 14911670 14911703 15 99 3.5 1.5 2.5 4.3 139 chr3R 14911564 intergenic not near genes chr3R 14911634 intergenic not near genes chr3R 14911703 intergenic not near genes chr3R_15_14910001 chr3R_14910001 RAL-181 1549 chr3R 14973591 14973601 chr3R 14974080 14974089 5 488 8.5 8.0 8.2 0.5 498 chr3R 14973591 intergenic not near genes chr3R 14973840 intergenic not near genes chr3R 14974089 intergenic not near genes chr3R_5_14970001 chr3R_14970001 RAL-181 1550 chr3R 14973605 14973622 chr3R 14974072 14974111 11 484 5.0 8.0 6.5 1.5 506 chr3R 14973605 intergenic not near genes chr3R 14973858 intergenic not near genes chr3R 14974111 intergenic not near genes chr3R_11_14970001 chr3R_14970001 RAL-181 1551 chr3R 15006856 15006893 chr3R 15007235 15007266 13 378 4.0 6.5 5.2 2.1 410 chr3R 15006856 intergenic not near genes chr3R 15007061 intergenic not near genes chr3R 15007266 intergenic not near genes chr3R_13_15005001 chr3R_15005001 RAL-181 1552 chr3R 15037004 15037037 chr3R 15037087 15037120 11 83 7.5 2.5 5.0 1.8 116 chr3R 15037004 intergenic RpL10Aa + chr3R 15037062 intergenic RpL10Aa + chr3R 15037120 intergenic RpL10Aa + chr3R_11_15035001 chr3R_15035001 RAL-181 1553 chr3R 15041427 15041458 chr3R 15045194 15045201 Doc 6 3763 2.5 3.5 3.0 1.5 3774 chr3R 15041427 intergenic not near genes chr3R 15043314 intergenic not near genes chr3R 15045201 intergenic not near genes chr3R_6_15040001 chr3R_15040001 RAL-181 1554 chr3R 15049462 15049488 chr3R 15049584 15049605 17 121 6.0 7.0 6.5 2.3 143 chr3R 15049462 intergenic not near genes chr3R 15049534 intergenic not near genes chr3R 15049605 intergenic not near genes chr3R_17_15045001 chr3R_15045001 RAL-181 1555 chr3R 15058622 15058629 chr3R 15058689 15058708 6 77 9.5 5.0 7.2 0.7 86 chr3R 15058622 intron dpr9 - chr3R 15058665 intron dpr9 - chr3R 15058708 intron dpr9 - chr3R_6_15055001 chr3R_15055001 RAL-181 1556 chr3R 15058633 15058642 chr3R 15058688 15058707 7 69 6.5 5.0 5.8 1.0 74 chr3R 15058633 intron dpr9 - chr3R 15058670 intron dpr9 - chr3R 15058707 intron dpr9 - chr3R_7_15055001 chr3R_15055001 RAL-181 1557 chr3R 15078340 15078374 chr3R 15078420 15078454 19 77 1.0 4.5 2.8 5.0 114 chr3R 15078340 intergenic CG6974 - chr3R 15078397 intergenic CG6974 - chr3R 15078454 intergenic CG6974 - chr3R_19_15075001 chr3R_15075001 RAL-181 1558 chr3R 15079817 15079837 chr3R 15080051 15080077 pogo 7 239 6.0 0.5 3.2 1.7 260 chr3R 15079817 3` UTR CG6966 - chr3R 15079947 3` UTR CG6966 - chr3R 15080077 3` UTR CG6966 - chr3R_7_15075001 chr3R_15075001 RAL-181 1559 chr3R 15088073 15088103 chr3R 15088170 15088200 8 98 5.5 0.0 2.8 2.1 127 chr3R 15088073 intron CG6966 - chr3R 15088136 intron CG6966 - chr3R 15088200 intron CG6966 - chr3R_8_15085001 chr3R_15085001 RAL-181 1560 chr3R 15102482 15102489 chr3R 15109796 15109803 412 4 7314 3.0 3.5 3.2 1.0 7321 chr3R 15102482 intron CG42788 - chr3R 15106142 intron CG42788 - chr3R 15109803 intron CG42788 - chr3R_4_15105001 chr3R_15105001 RAL-181 1561 chr3R 15127780 15127805 chr3R 15127860 15127877 4 78 0.0 0.5 0.2 3.3 97 chr3R 15127780 intron CG42788 - chr3R 15127828 intron CG42788 - chr3R 15127877 intron CG42788 - chr3R_4_15125001 chr3R_15125001 RAL-181 1562 chr3R 15132057 15132085 chr3R 15135116 15135144 Juan 9 3058 6.5 6.5 6.5 1.2 3087 chr3R 15132057 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135144 3` UTR CG6912 - chr3R_9_15130001 chr3R_15130001 RAL-181 1563 chr3R 15160563 15160588 chr3R 15160661 15160672 8 96 2.0 3.5 2.8 2.1 109 chr3R 15160563 intron Gyc88E + chr3R 15160618 intron Gyc88E + chr3R 15160672 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-181 1564 chr3R 15162567 15162572 chr3R 15167308 15167339 F-element 4 4754 5.0 2.5 3.8 0.8 4772 chr3R 15162567 intron Gyc88E + chr3R 15164953 intron Gyc88E + chr3R 15167339 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-181 1565 chr3R 15184534 15184570 chr3R 15184616 15184652 24 80 3.5 8.5 6.0 3.4 118 chr3R 15184534 intron Gyc88E + chr3R 15184593 intron Gyc88E + chr3R 15184652 intron Gyc88E + chr3R_24_15180001 chr3R_15180001 RAL-181 1566 chr3R 15305876 15305891 chr3R 15305947 15305977 10 81 1.5 5.0 3.2 2.4 101 chr3R 15305876 intron Tm1 + chr3R 15305926 intron Tm1 + chr3R 15305977 intron Tm1 + chr3R_10_15305001 chr3R_15305001 RAL-181 1567 chr3R 15416248 15416279 chr3R 15416327 15416358 10 76 3.5 2.0 2.8 2.6 110 chr3R 15416248 3` UTR Atx2 + chr3R 15416303 3` UTR Atx2 + chr3R 15416358 3` UTR Atx2 + chr3R_10_15415001 chr3R_15415001 RAL-181 1568 chr3R 15466895 15466918 chr3R 15467313 15467318 8 415 3.5 2.0 2.8 2.1 423 chr3R 15466895 intron AdamTS-A - chr3R 15467106 intron AdamTS-A - chr3R 15467318 intron AdamTS-A - chr3R_8_15465001 chr3R_15465001 RAL-181 1569 chr3R 15517605 15517629 chr3R 15517687 15517709 6 77 3.5 3.0 3.2 1.4 104 chr3R 15517605 intergenic not near genes chr3R 15517657 intergenic not near genes chr3R 15517709 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-181 1570 chr3R 15594654 15594672 chr3R 15594736 15594755 11 83 0.0 4.0 2.0 3.7 101 chr3R 15594654 intergenic not near genes chr3R 15594704 intergenic not near genes chr3R 15594755 intergenic not near genes chr3R_11_15590001 chr3R_15590001 RAL-181 1571 chr3R 15601163 15601194 chr3R 15608685 15608716 412 12 7520 9.5 8.5 9.0 1.2 7553 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-181 1572 chr3R 15618748 15618764 chr3R 15626222 15626238 blood 6 7474 0.5 12.0 6.2 0.8 7490 chr3R 15618748 intergenic not near genes chr3R 15622493 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-181 1573 chr3R 15632876 15632907 chr3R 15632993 15633025 10 112 2.0 2.0 2.0 3.3 149 chr3R 15632876 intergenic not near genes chr3R 15632950 intergenic not near genes chr3R 15633025 intergenic not near genes chr3R_10_15630001 chr3R_15630001 RAL-181 1574 chr3R 15635231 15635240 chr3R 15635343 15635352 6 112 0.0 7.5 3.8 1.2 121 chr3R 15635231 intergenic CG43335 + chr3R 15635292 intergenic CG43335 + chr3R 15635352 intergenic CG43335 + chr3R_6_15635001 chr3R_15635001 RAL-181 1575 chr3R 15641810 15641834 chr3R 15641980 15641990 15 169 5.5 9.0 7.2 1.8 180 chr3R 15641810 intergenic not near genes chr3R 15641900 intergenic not near genes chr3R 15641990 intergenic not near genes chr3R_15_15640001 chr3R_15640001 RAL-181 1576 chr3R 15691181 15691331 chr3R 15691285 15691418 12 94 1.5 1.5 1.5 4.8 237 chr3R 15691181 intergenic not near genes chr3R 15691300 intergenic not near genes chr3R 15691418 intergenic not near genes chr3R_12_15690001 chr3R_15690001 RAL-181 1577 chr3R 15715809 15715834 chr3R 15715888 15715919 7 81 3.5 3.5 3.5 1.6 110 chr3R 15715809 exon CG31294 - chr3R 15715864 intron CG31294 - chr3R 15715919 intron CG31294 - chr3R_7_15715001 chr3R_15715001 RAL-181 1578 chr3R 15725562 15725590 chr3R 15725831 15725856 4 264 2.0 3.5 2.8 1.1 294 chr3R 15725562 intergenic not near genes chr3R 15725709 intergenic not near genes chr3R 15725856 intergenic not near genes chr3R_4_15725001 chr3R_15725001 RAL-181 1579 chr3R 15783741 15783758 chr3R 15784021 15784035 7 279 4.0 9.0 6.5 0.9 294 chr3R 15783741 intergenic not near genes chr3R 15783888 intergenic not near genes chr3R 15784035 intergenic not near genes chr3R_7_15780001 chr3R_15780001 RAL-181 1580 chr3R 15817261 15817272 chr3R 15818263 15818265 5 1000 1.5 8.5 5.0 0.8 1004 chr3R 15817261 intron alpha-Man-IIb + chr3R 15817763 intron alpha-Man-IIb + chr3R 15818265 intron alpha-Man-IIb + chr3R_5_15815001 chr3R_15815001 RAL-181 1581 chr3R 15892651 15892685 chr3R 15892731 15892745 8 76 3.0 4.0 3.5 1.8 94 chr3R 15892651 intron CG14877 - chr3R 15892698 intron CG14877 - chr3R 15892745 intron CG14877 - chr3R_8_15890001 chr3R_15890001 RAL-181 1582 chr3R 16048850 16048883 chr3R 16048940 16048963 9 85 0.5 2.5 1.5 3.6 113 chr3R 16048850 intron ird5 - chr3R 16048906 intron ird5 - chr3R 16048963 intron ird5 - chr3R_9_16045001 chr3R_16045001 RAL-181 1583 chr3R 16154755 16154792 chr3R 16154882 16154915 15 125 4.0 4.5 4.2 2.9 160 chr3R 16154755 intergenic CG6006 + chr3R 16154835 intergenic CG6006 + chr3R 16154915 intergenic CG6006 + chr3R_15_16150001 chr3R_16150001 RAL-181 1584 chr3R 16238501 16238530 chr3R 16238578 16238605 8 76 4.5 3.5 4.0 1.6 104 chr3R 16238501 intron tara + chr3R 16238553 intron tara + chr3R 16238605 intron tara + chr3R_8_16235001 chr3R_16235001 RAL-181 1585 chr3R 16246524 16246555 chr3R 16246600 16246630 7 75 0.0 4.0 2.0 2.3 106 chr3R 16246524 intron tara + chr3R 16246577 intron tara + chr3R 16246630 intron tara + chr3R_7_16245001 chr3R_16245001 RAL-181 1586 chr3R 16253560 16253572 chr3R 16253645 16253657 7 83 0.0 6.0 3.0 1.8 97 chr3R 16253560 intron tara + chr3R 16253608 intron tara + chr3R 16253657 intron tara + chr3R_7_16250001 chr3R_16250001 RAL-181 1587 chr3R 16285240 16285276 chr3R 16285316 16285352 13 72 4.0 5.5 4.8 2.2 112 chr3R 16285240 intron gish + chr3R 16285296 intron gish + chr3R 16285352 intron gish + chr3R_13_16285001 chr3R_16285001 RAL-181 1588 chr3R 16472586 16472600 chr3R 16472654 16472670 8 71 11.5 9.5 10.5 0.7 84 chr3R 16472586 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472670 5` UTR Gyc-89Da + chr3R_8_16470001 chr3R_16470001 RAL-181 1589 chr3R 16582911 16582919 chr3R 16582987 16582994 5 75 8.0 5.0 6.5 0.7 83 chr3R 16582911 intron Scp2 - chr3R 16582952 intron Scp2 - chr3R 16582994 intron Scp2 - chr3R_5_16580001 chr3R_16580001 RAL-181 1590 chr3R 16667080 16667090 chr3R 16667162 16667172 8 82 7.5 5.0 6.2 1.1 92 chr3R 16667080 intron Ubx - chr3R 16667126 intron Ubx - chr3R 16667172 intron Ubx - chr3R_8_16665001 chr3R_16665001 RAL-181 1591 chr3R 16676482 16676505 chr3R 16676552 16676583 13 75 3.5 3.0 3.2 3.1 101 chr3R 16676482 intron Ubx - chr3R 16676532 intron Ubx - chr3R 16676583 intron Ubx - chr3R_13_16675001 chr3R_16675001 RAL-181 1592 chr3R 16725780 16725813 chr3R 16725860 16725893 9 78 5.5 5.0 5.2 1.5 113 chr3R 16725780 intron Ubx - chr3R 16725836 intron Ubx - chr3R 16725893 intron Ubx - chr3R_9_16725001 chr3R_16725001 RAL-181 1593 chr3R 16756317 16756344 chr3R 16762508 16762532 diver 17 6189 6.0 0.5 3.2 4.0 6215 chr3R 16756317 intron bxd - chr3R 16759424 intron bxd - chr3R 16762532 intron bxd - chr3R_17_16755001 chr3R_16755001 RAL-181 1594 chr3R 16771613 16771644 chr3R 16771688 16771701 10 73 5.0 3.0 4.0 2.0 88 chr3R 16771613 intron bxd - chr3R 16771657 intron bxd - chr3R 16771701 intron bxd - chr3R_10_16770001 chr3R_16770001 RAL-181 1595 chr3R 16860333 16860364 chr3R 16860411 16860442 6 78 1.5 0.0 0.8 3.3 109 chr3R 16860333 intron iab-8 - chr3R 16860388 intron iab-8 - chr3R 16860442 intron iab-8 - chr3R_6_16860001 chr3R_16860001 RAL-181 1596 chr3R 17012961 17012982 chr3R 17013037 17013058 12 75 2.5 3.5 3.0 3.0 97 chr3R 17012961 intergenic CG8907 + chr3R 17013010 intergenic CG8907 + chr3R 17013058 intergenic not near genes chr3R_12_17010001 chr3R_17010001 RAL-181 1597 chr3R 17184739 17184750 chr3R 17184814 17184826 4 76 1.0 6.0 3.5 0.9 87 chr3R 17184739 intron Mur89F - chr3R 17184782 intron Mur89F - chr3R 17184826 intron Mur89F - chr3R_4_17180001 chr3R_17180001 RAL-181 1598 chr3R 17194408 17194432 chr3R 17194487 17194511 15 77 2.0 4.0 3.0 3.8 103 chr3R 17194408 intron Mur89F - chr3R 17194460 intron Mur89F - chr3R 17194511 intron Mur89F - chr3R_15_17190001 chr3R_17190001 RAL-181 1599 chr3R 17268691 17268701 chr3R 17268796 17268823 4 118 2.0 5.5 3.8 0.8 132 chr3R 17268691 intergenic not near genes chr3R 17268757 intergenic not near genes chr3R 17268823 intergenic not near genes chr3R_4_17265001 chr3R_17265001 RAL-181 1600 chr3R 17294666 17294702 chr3R 17295089 17295130 BS 13 424 1.5 2.5 2.0 4.3 464 chr3R 17294666 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295130 intergenic not near genes chr3R_13_17290001 chr3R_17290001 RAL-181 1601 chr3R 17335165 17335183 chr3R 17335241 17335255 9 75 4.0 5.0 4.5 1.6 90 chr3R 17335165 intron beat-IIa - chr3R 17335210 intron beat-IIa - chr3R 17335255 intron beat-IIa - chr3R_9_17335001 chr3R_17335001 RAL-181 1602 chr3R 17346702 17346718 chr3R 17348263 17348281 F-element 7 1560 2.0 8.5 5.2 1.1 1579 chr3R 17346702 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348281 intron beat-IIa - chr3R_7_17345001 chr3R_17345001 RAL-181 1603 chr3R 17353447 17353477 chr3R 17353524 17353551 7 73 2.5 1.5 2.0 2.3 104 chr3R 17353447 intron beat-IIa - chr3R 17353499 intron beat-IIa - chr3R 17353551 intron beat-IIa - chr3R_7_17350001 chr3R_17350001 RAL-181 1604 chr3R 17461197 17461231 chr3R 17461279 17461312 14 81 2.0 1.5 1.8 5.0 115 chr3R 17461197 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461312 intergenic not near genes chr3R_14_17460001 chr3R_17460001 RAL-181 1605 chr3R 17521571 17521577 chr3R 17521731 17521733 4 158 0.0 9.0 4.5 0.7 162 chr3R 17521571 intergenic not near genes chr3R 17521652 intergenic not near genes chr3R 17521733 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-181 1606 chr3R 17521580 17521588 chr3R 17521723 17521748 7 154 0.0 6.5 3.2 1.7 168 chr3R 17521580 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-181 1607 chr3R 17557033 17557043 chr3R 17557419 17557429 6 386 7.0 8.5 7.8 0.7 396 chr3R 17557033 intergenic not near genes chr3R 17557231 intergenic not near genes chr3R 17557429 intergenic not near genes chr3R_6_17555001 chr3R_17555001 RAL-181 1608 chr3R 17557044 17557048 chr3R 17557414 17557433 4 381 4.0 6.5 5.2 0.6 389 chr3R 17557044 intergenic not near genes chr3R 17557238 intergenic not near genes chr3R 17557433 intergenic not near genes chr3R_4_17555001 chr3R_17555001 RAL-181 1609 chr3R 17584855 17584882 chr3R 17585025 17585028 10 165 1.5 4.5 3.0 2.5 173 chr3R 17584855 intergenic not near genes chr3R 17584942 intergenic not near genes chr3R 17585028 intergenic not near genes chr3R_10_17580001 chr3R_17580001 RAL-181 1610 chr3R 17728252 17728259 chr3R 17728367 17728376 5 115 6.0 6.5 6.2 0.7 124 chr3R 17728252 intron Lgr1 + chr3R 17728314 intron Lgr1 + chr3R 17728376 5` UTR Lgr1 + chr3R_5_17725001 chr3R_17725001 RAL-181 1611 chr3R 17728260 17728274 chr3R 17728366 17728390 6 114 3.5 6.5 5.0 1.0 130 chr3R 17728260 intron Lgr1 + chr3R 17728325 5` UTR Lgr1 + chr3R 17728390 exon Lgr1 + chr3R_6_17725001 chr3R_17725001 RAL-181 1612 chr3R 17925853 17925889 chr3R 17927317 17927356 hobo 14 1465 5.0 10.0 7.5 1.6 1503 chr3R 17925853 intron cpo + chr3R 17926604 intron cpo + chr3R 17927356 intron cpo + chr3R_14_17925001 chr3R_17925001 RAL-181 1613 chr3R 18032784 18032809 chr3R 18040452 18040475 opus 9 7667 0.0 2.0 1.0 4.5 7691 chr3R 18032784 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040475 intergenic not near genes chr3R_9_18035001 chr3R_18035001 RAL-181 1614 chr3R 18041754 18041772 chr3R 18041831 18041849 4 77 0.0 0.0 0.0 4.0 95 chr3R 18041754 intergenic not near genes chr3R 18041802 intergenic not near genes chr3R 18041849 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-181 1615 chr3R 18061443 18061457 chr3R 18061535 18061549 5 90 0.0 0.0 0.0 5.0 106 chr3R 18061443 intergenic not near genes chr3R 18061496 intergenic not near genes chr3R 18061549 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-181 1616 chr3R 18105854 18105860 chr3R 18106093 18106099 9 238 3.5 6.5 5.0 1.5 245 chr3R 18105854 intron sr + chr3R 18105976 intron sr + chr3R 18106099 intron sr + chr3R_9_18105001 chr3R_18105001 RAL-181 1617 chr3R 18163671 18163703 chr3R 18163961 18163993 11 289 2.0 3.5 2.8 2.9 322 chr3R 18163671 exon CG7218 - chr3R 18163832 intron CG7218 - chr3R 18163993 intron CG7218 - chr3R_11_18160001 chr3R_18160001 RAL-181 1618 chr3R 18235212 18235244 chr3R 18235388 18235417 20 171 3.5 1.5 2.5 5.7 205 chr3R 18235212 intergenic not near genes chr3R 18235314 intergenic not near genes chr3R 18235417 intergenic not near genes chr3R_20_18235001 chr3R_18235001 RAL-181 1619 chr3R 18322804 18322836 chr3R 18323444 18323473 15 639 38.5 51.5 45.0 0.3 669 chr3R 18322804 intron CG31235 - chr3R 18323138 intron CG31235 - chr3R 18323473 intron CG31235 - chr3R_15_18320001 chr3R_18320001 RAL-181 1620 chr3R 18485447 18485451 chr3R 18485529 18485551 4 96 3.0 0.0 1.5 1.6 104 chr3R 18485447 intron fru - chr3R 18485499 intron fru - chr3R 18485551 intron fru - chr3R_4_18485001 chr3R_18485001 RAL-181 1621 chr3R 18575572 18575603 chr3R 18575655 18575687 22 82 4.0 6.5 5.2 3.5 115 chr3R 18575572 intron,intron CG7694 +,fray + chr3R 18575630 intron,intron CG7694 +,fray + chr3R 18575687 intron,intron CG7694 +,fray + chr3R_22_18575001 chr3R_18575001 RAL-181 1622 chr3R 18579508 18579587 chr3R 18579584 18579664 4 77 0.5 0.5 0.5 2.7 156 chr3R 18579508 intron,intron CG7694 +,fray + chr3R 18579586 intron,intron CG7694 +,fray + chr3R 18579664 intron,intron CG7694 +,fray + chr3R_4_18575001 chr3R_18575001 RAL-181 1623 chr3R 18606515 18606534 chr3R 18610744 18610766 F-element 5 4231 3.5 3.0 3.2 1.2 4251 chr3R 18606515 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610766 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-181 1624 chr3R 18781705 18781724 chr3R 18781767 18781779 6 68 2.5 6.0 4.2 1.2 74 chr3R 18781705 intron CG7720 - chr3R 18781742 intron CG7720 - chr3R 18781779 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-181 1625 chr3R 18791496 18791519 chr3R 18791574 18791596 9 70 4.5 4.0 4.2 1.7 100 chr3R 18791496 intron CG7720 - chr3R 18791546 intron CG7720 - chr3R 18791596 intron CG7720 - chr3R_9_18790001 chr3R_18790001 RAL-181 1626 chr3R 18808473 18808507 chr3R 18808550 18808583 4 77 1.0 2.0 1.5 1.6 110 chr3R 18808473 intron CG18208 - chr3R 18808528 intron CG18208 - chr3R 18808583 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-181 1627 chr3R 18812076 18812107 chr3R 18812152 18812185 23 76 7.0 6.5 6.8 2.9 109 chr3R 18812076 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_23_18810001 chr3R_18810001 RAL-181 1628 chr3R 18936178 18936194 chr3R 18936261 18936277 7 83 6.5 4.0 5.2 1.1 99 chr3R 18936178 intron CG42613 + chr3R 18936228 intron CG42613 + chr3R 18936277 intron CG42613 + chr3R_7_18935001 chr3R_18935001 RAL-181 1629 chr3R 19106822 19106839 chr3R 19106912 19106917 6 88 12.0 1.0 6.5 0.8 95 chr3R 19106822 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106917 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-181 1630 chr3R 19117062 19117073 chr3R 19117206 19117217 5 144 12.5 0.0 6.2 0.7 155 chr3R 19117062 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117217 intron CG6040 + chr3R_5_19115001 chr3R_19115001 RAL-181 1631 chr3R 19133888 19134016 chr3R 19136506 19136632 4 2616 43.5 99.0 71.2 0.1 2744 chr3R 19133888 intron Cyp12a5 + chr3R 19135260 exon Cyp12a4 + chr3R 19136632 exon Cyp12a4 + chr3R_4_19135001 chr3R_19135001 RAL-181 1632 chr3R 19136407 19136408 chr3R 19139793 19139810 Bari1 5 3392 70.0 12.0 41.0 0.1 3403 chr3R 19136407 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139810 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-181 1633 chr3R 19140266 19140300 chr3R 19140711 19140744 19 445 4.5 5.0 4.8 3.3 478 chr3R 19140266 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140744 3` UTR Ppcs - chr3R_19_19140001 chr3R_19140001 RAL-181 1634 chr3R 19204482 19204503 chr3R 19204564 19204565 8 77 5.5 2.5 4.0 1.6 83 chr3R 19204482 intergenic not near genes chr3R 19204524 intergenic not near genes chr3R 19204565 intergenic not near genes chr3R_8_19200001 chr3R_19200001 RAL-181 1635 chr3R 19474890 19474903 chr3R 19475130 19475139 8 238 0.5 0.5 0.5 5.3 249 chr3R 19474890 intron Dys + chr3R 19475014 intron Dys + chr3R 19475139 intron Dys + chr3R_8_19475001 chr3R_19475001 RAL-181 1636 chr3R 19475616 19475648 chr3R 19475740 19475772 14 120 8.5 5.5 7.0 1.8 156 chr3R 19475616 intron Dys + chr3R 19475694 intron Dys + chr3R 19475772 intron Dys + chr3R_14_19475001 chr3R_19475001 RAL-181 1637 chr3R 19550066 19550095 chr3R 19550175 19550194 10 100 7.5 4.5 6.0 1.4 128 chr3R 19550066 intron Dys + chr3R 19550130 intron Dys + chr3R 19550194 intron Dys + chr3R_10_19550001 chr3R_19550001 RAL-181 1638 chr3R 19564359 19564384 chr3R 19564553 19564576 10 194 2.0 2.0 2.0 3.3 217 chr3R 19564359 intron Dys + chr3R 19564468 intron Dys + chr3R 19564576 intron Dys + chr3R_10_19560001 chr3R_19560001 RAL-181 1639 chr3R 19667994 19668025 chr3R 19668076 19668108 10 80 0.0 1.5 0.8 5.6 114 chr3R 19667994 intron CG7432 + chr3R 19668051 intron CG7432 + chr3R 19668108 intron CG7432 + chr3R_10_19665001 chr3R_19665001 RAL-181 1640 chr3R 19678486 19678518 chr3R 19678578 19678609 14 91 3.5 4.0 3.8 2.9 123 chr3R 19678486 intron Naam + chr3R 19678548 intron Naam + chr3R 19678609 intron Naam + chr3R_14_19675001 chr3R_19675001 RAL-181 1641 chr3R 19685795 19685829 chr3R 19686020 19686052 16 223 5.5 2.0 3.8 3.3 257 chr3R 19685795 intron Naam + chr3R 19685924 intron Naam + chr3R 19686052 intron Naam + chr3R_16_19685001 chr3R_19685001 RAL-181 1642 chr3R 19793892 19793925 chr3R 19793985 19794010 14 90 8.0 1.5 4.8 2.4 118 chr3R 19793892 intergenic bnl - chr3R 19793951 intergenic bnl - chr3R 19794010 intergenic bnl - chr3R_14_19790001 chr3R_19790001 RAL-181 1643 chr3R 19914016 19914044 chr3R 19914109 19914137 4 90 2.0 1.0 1.5 1.6 121 chr3R 19914016 3` UTR RhoGAP92B + chr3R 19914076 3` UTR RhoGAP92B + chr3R 19914137 3` UTR RhoGAP92B + chr3R_4_19910001 chr3R_19910001 RAL-181 1644 chr3R 20041110 20041145 chr3R 20041212 20041238 12 99 7.0 1.5 4.2 2.3 128 chr3R 20041110 intron CG17193 - chr3R 20041174 intron CG17193 - chr3R 20041238 intron CG17193 - chr3R_12_20040001 chr3R_20040001 RAL-181 1645 chr3R 20156705 20156724 chr3R 20165875 20165893 roo 8 9168 6.0 5.0 5.5 1.2 9188 chr3R 20156705 intergenic not near genes chr3R 20161299 intergenic not near genes chr3R 20165893 intergenic not near genes chr3R_8_20160001 chr3R_20160001 RAL-181 1646 chr3R 20188826 20188839 chr3R 20188899 20188930 8 89 1.0 1.5 1.2 3.6 104 chr3R 20188826 intergenic not near genes chr3R 20188878 intergenic not near genes chr3R 20188930 intergenic not near genes chr3R_8_20185001 chr3R_20185001 RAL-181 1647 chr3R 20197113 20197149 chr3R 20197190 20197222 15 76 1.5 2.0 1.8 5.4 109 chr3R 20197113 intergenic not near genes chr3R 20197168 intergenic not near genes chr3R 20197222 intergenic not near genes chr3R_15_20195001 chr3R_20195001 RAL-181 1648 chr3R 20201364 20201387 chr3R 20201442 20201472 5 83 6.0 4.5 5.2 0.8 108 chr3R 20201364 intergenic not near genes chr3R 20201418 intergenic not near genes chr3R 20201472 intergenic not near genes chr3R_5_20200001 chr3R_20200001 RAL-181 1649 chr3R 20229171 20229199 chr3R 20229267 20229298 17 98 6.0 3.5 4.8 2.9 127 chr3R 20229171 intron Nlg4 + chr3R 20229234 intron Nlg4 + chr3R 20229298 intron Nlg4 + chr3R_17_20225001 chr3R_20225001 RAL-181 1650 chr3R 20266528 20266546 chr3R 20272988 20273006 Burdock 8 6468 0.5 3.0 1.8 2.9 6478 chr3R 20266528 intron cic + chr3R 20269767 intron cic + chr3R 20273006 intron cic + chr3R_8_20265001 chr3R_20265001 RAL-181 1651 chr3R 20282282 20282308 chr3R 20282358 20282382 5 75 0.0 2.0 1.0 2.5 100 chr3R 20282282 intron cic + chr3R 20282332 intron cic + chr3R 20282382 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-181 1652 chr3R 20308985 20309015 chr3R 20309060 20309065 8 70 7.0 4.5 5.8 1.2 80 chr3R 20308985 intergenic CG42668 + chr3R 20309025 intergenic CG42668 + chr3R 20309065 intergenic CG42668 + chr3R_8_20305001 chr3R_20305001 RAL-181 1653 chr3R 20331000 20331015 chr3R 20331485 20331501 roo 6 485 3.0 1.0 2.0 2.0 501 chr3R 20331000 intergenic Sirt2 + chr3R 20331250 intergenic Sirt2 + chr3R 20331501 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-181 1654 chr3R 20375845 20375876 chr3R 20375934 20375966 6 90 3.5 1.5 2.5 1.7 121 chr3R 20375845 intergenic not near genes chr3R 20375906 intergenic not near genes chr3R 20375966 intergenic not near genes chr3R_6_20375001 chr3R_20375001 RAL-181 1655 chr3R 20433110 20433134 chr3R 20433199 20433224 4 90 1.5 3.0 2.2 1.2 114 chr3R 20433110 intron Gfrl - chr3R 20433167 intron Gfrl - chr3R 20433224 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-181 1656 chr3R 20443153 20443184 chr3R 20443275 20443306 10 121 2.5 6.0 4.2 1.9 153 chr3R 20443153 intron Gfrl - chr3R 20443230 intron Gfrl - chr3R 20443306 intron Gfrl - chr3R_10_20440001 chr3R_20440001 RAL-181 1657 chr3R 20499812 20499830 chr3R 20499890 20499907 9 78 7.5 1.5 4.5 1.6 95 chr3R 20499812 intergenic Dic2 - chr3R 20499860 intergenic Dic2 - chr3R 20499907 intergenic Dic2 - chr3R_9_20495001 chr3R_20495001 RAL-181 1658 chr3R 20519003 20519021 chr3R 20519082 20519086 12 77 10.0 6.0 8.0 1.3 83 chr3R 20519003 intergenic not near genes chr3R 20519044 intergenic not near genes chr3R 20519086 intergenic not near genes chr3R_12_20515001 chr3R_20515001 RAL-181 1659 chr3R 20519023 20519031 chr3R 20519081 20519110 4 73 5.0 5.5 5.2 0.6 87 chr3R 20519023 intergenic not near genes chr3R 20519066 intergenic not near genes chr3R 20519110 intergenic not near genes chr3R_4_20515001 chr3R_20515001 RAL-181 1660 chr3R 20594492 20594513 chr3R 20594578 20594597 4 87 2.0 0.5 1.2 1.8 105 chr3R 20594492 intron bon + chr3R 20594544 intron bon + chr3R 20594597 intron bon + chr3R_4_20590001 chr3R_20590001 RAL-181 1661 chr3R 20617182 20617209 chr3R 20617263 20617285 4 79 1.0 3.5 2.2 1.2 103 chr3R 20617182 intergenic CG15923 - chr3R 20617234 intergenic CG15923 - chr3R 20617285 intergenic CG15923 - chr3R_4_20615001 chr3R_20615001 RAL-181 1662 chr3R 20703483 20703511 chr3R 20703876 20703905 4 392 0.5 2.5 1.5 1.6 422 chr3R 20703483 intron Oamb - chr3R 20703694 intron Oamb - chr3R 20703905 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-181 1663 chr3R 20722853 20722883 chr3R 20722980 20722992 9 122 2.5 3.5 3.0 2.2 139 chr3R 20722853 intergenic not near genes chr3R 20722922 intergenic not near genes chr3R 20722992 intergenic not near genes chr3R_9_20720001 chr3R_20720001 RAL-181 1664 chr3R 20767514 20767533 chr3R 20767592 20767627 6 81 5.5 4.0 4.8 1.0 113 chr3R 20767514 intron Syp + chr3R 20767570 intron Syp + chr3R 20767627 intron Syp + chr3R_6_20765001 chr3R_20765001 RAL-181 1665 chr3R 20771718 20771729 chr3R 20771784 20771794 5 73 0.0 8.0 4.0 1.0 76 chr3R 20771718 intron,intron Syp +,Takl1 - chr3R 20771756 intron,intron Syp +,Takl1 - chr3R 20771794 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-181 1666 chr3R 20787438 20787451 chr3R 20787528 20787542 8 90 5.0 2.0 3.5 1.8 104 chr3R 20787438 intron Syp + chr3R 20787490 intron Syp + chr3R 20787542 intron Syp + chr3R_8_20785001 chr3R_20785001 RAL-181 1667 chr3R 20854474 20854515 chr3R 20859267 20859303 Doc 5 4790 5.5 2.0 3.8 1.0 4829 chr3R 20854474 intron Ir93a - chr3R 20856888 intron Ir93a - chr3R 20859303 exon Ir93a - chr3R_5_20855001 chr3R_20855001 RAL-181 1668 chr3R 20870250 20870283 chr3R 20870334 20870364 19 82 5.0 4.5 4.8 3.3 114 chr3R 20870250 intergenic not near genes chr3R 20870307 intergenic not near genes chr3R 20870364 intergenic not near genes chr3R_19_20870001 chr3R_20870001 RAL-181 1669 chr3R 20901655 20901687 chr3R 20901758 20901790 10 100 3.0 4.0 3.5 2.2 135 chr3R 20901655 intergenic CG5621 + chr3R 20901722 intergenic CG5621 + chr3R 20901790 intergenic CG5621 + chr3R_10_20900001 chr3R_20900001 RAL-181 1670 chr3R 20942809 20942842 chr3R 20942885 20942917 18 75 3.0 5.0 4.0 3.6 108 chr3R 20942809 intron CG31191 - chr3R 20942863 intron CG31191 - chr3R 20942917 intron CG31191 - chr3R_18_20940001 chr3R_20940001 RAL-181 1671 chr3R 20979492 20979512 chr3R 20979567 20979588 5 76 5.0 6.0 5.5 0.8 96 chr3R 20979492 intron Calx + chr3R 20979540 intron Calx + chr3R 20979588 intron Calx + chr3R_5_20975001 chr3R_20975001 RAL-181 1672 chr3R 21041104 21041130 chr3R 21041257 21041283 7 153 1.5 6.0 3.8 1.5 179 chr3R 21041104 exon Dhc93AB - chr3R 21041194 intron Dhc93AB - chr3R 21041283 intron Dhc93AB - chr3R_7_21040001 chr3R_21040001 RAL-181 1673 chr3R 21101526 21101557 chr3R 21101639 21101676 12 108 4.5 5.5 5.0 2.0 150 chr3R 21101526 exon CG7044 - chr3R 21101601 5` UTR CG7044 - chr3R 21101676 5` UTR CG7044 - chr3R_12_21100001 chr3R_21100001 RAL-181 1674 chr3R 21108048 21108066 chr3R 21108301 21108327 4 257 1.0 2.0 1.5 1.6 279 chr3R 21108048 intergenic Sec15 -,rtet + chr3R 21108188 intergenic Sec15 -,rtet + chr3R 21108327 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-181 1675 chr3R 21141672 21141707 chr3R 21150153 21150161 Tirant 11 8466 3.0 3.5 3.2 2.6 8489 chr3R 21141672 intron SNF4Agamma + chr3R 21145916 intron SNF4Agamma + chr3R 21150161 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-181 1676 chr3R 21385707 21385962 chr3R 21385773 21386038 18 75 3.0 0.0 1.5 7.2 331 chr3R 21385707 intergenic not near genes chr3R 21385872 intergenic not near genes chr3R 21386038 intergenic not near genes chr3R_18_21385001 chr3R_21385001 RAL-181 1677 chr3R 21422337 21422370 chr3R 21422437 21422471 17 99 1.5 4.0 2.8 4.5 134 chr3R 21422337 intron lbl - chr3R 21422404 intron lbl - chr3R 21422471 intron lbl - chr3R_17_21420001 chr3R_21420001 RAL-181 1678 chr3R 21472026 21472035 chr3R 21472107 21472114 6 80 4.0 6.0 5.0 1.0 88 chr3R 21472026 intergenic not near genes chr3R 21472070 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-181 1679 chr3R 21518257 21518266 chr3R 21518341 21518350 5 83 0.0 7.0 3.5 1.1 93 chr3R 21518257 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518350 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-181 1680 chr3R 21519985 21520134 chr3R 21520086 21520228 5 98 2.0 2.0 2.0 1.7 243 chr3R 21519985 intergenic not near genes chr3R 21520106 intergenic not near genes chr3R 21520228 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-181 1681 chr3R 21758663 21758684 chr3R 21758876 21758880 8 209 5.5 5.0 5.2 1.3 217 chr3R 21758663 intergenic CG42335 + chr3R 21758772 5` UTR CG42335 + chr3R 21758880 exon CG42335 + chr3R_8_21755001 chr3R_21755001 RAL-181 1682 chr3R 21761118 21761155 chr3R 21768510 21768525 mdg1 20 7386 3.5 5.5 4.5 3.6 7407 chr3R 21761118 exon CG42335 + chr3R 21764822 intron CG42335 + chr3R 21768525 exon CG42335 + chr3R_20_21760001 chr3R_21760001 RAL-181 1683 chr3R 21858267 21858278 chr3R 21858361 21858371 5 93 9.5 6.0 7.8 0.6 104 chr3R 21858267 intergenic not near genes chr3R 21858319 intergenic not near genes chr3R 21858371 intergenic not near genes chr3R_5_21855001 chr3R_21855001 RAL-181 1684 chr3R 21858279 21858287 chr3R 21858351 21858366 6 84 6.5 4.0 5.2 1.0 87 chr3R 21858279 intergenic not near genes chr3R 21858322 intergenic not near genes chr3R 21858366 intergenic not near genes chr3R_6_21855001 chr3R_21855001 RAL-181 1685 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 14.0 33.0 23.5 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-181 1686 chr3R 21907534 21907534 chr3R 28831801 28831804 17 6924268 31.5 25.5 28.5 0.6 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-181 1687 chr3R 8339246 8339247 chr3R 21907535 21907535 6 13568288 14.0 32.5 23.2 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-181 1688 chr3R 19457915 19457915 chr3R 21907535 21907535 4 2449620 7.0 32.5 19.8 0.2 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-181 1689 chr3R 21907535 21907535 chr3R 28831801 28831802 28 6924266 32.0 25.5 28.8 0.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-181 1690 chr3R 21907536 21907536 chr3R 28831801 28831802 18 6924266 32.0 25.5 28.8 0.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-181 1691 chr3R 21921421 21921433 chr3R 21921652 21921654 10 229 7.0 3.0 5.0 1.7 233 chr3R 21921421 intergenic not near genes chr3R 21921538 intergenic not near genes chr3R 21921654 intergenic not near genes chr3R_10_21920001 chr3R_21920001 RAL-181 1692 chr3R 21921436 21921443 chr3R 21921649 21921672 7 223 5.0 3.0 4.0 1.4 236 chr3R 21921436 intergenic not near genes chr3R 21921554 intergenic not near genes chr3R 21921672 intergenic not near genes chr3R_7_21920001 chr3R_21920001 RAL-181 1693 chr3R 21938057 21938079 chr3R 21938215 21938236 5 157 0.0 2.5 1.2 2.3 179 chr3R 21938057 intergenic not near genes chr3R 21938146 intergenic not near genes chr3R 21938236 intergenic not near genes chr3R_5_21935001 chr3R_21935001 RAL-181 1694 chr3R 21983135 21983168 chr3R 21983216 21983243 8 80 4.0 3.5 3.8 1.7 108 chr3R 21983135 intron Eip93F + chr3R 21983189 intron Eip93F + chr3R 21983243 intron Eip93F + chr3R_8_21980001 chr3R_21980001 RAL-181 1695 chr3R 22055563 22055589 chr3R 22055749 22055778 12 187 1.0 2.5 1.8 4.3 215 chr3R 22055563 intron how + chr3R 22055670 intron how + chr3R 22055778 intron how + chr3R_12_22055001 chr3R_22055001 RAL-181 1696 chr3R 22115364 22115372 chr3R 22115762 22115764 4 396 2.5 3.5 3.0 1.0 400 chr3R 22115364 intergenic Ir94b -,Ir94a + chr3R 22115564 exon Ir94b - chr3R 22115764 exon Ir94b - chr3R_4_22115001 chr3R_22115001 RAL-181 1697 chr3R 22192355 22192371 chr3R 22192614 22192645 5 268 0.0 1.5 0.8 2.8 290 chr3R 22192355 intron SKIP + chr3R 22192500 intron SKIP + chr3R 22192645 intron SKIP + chr3R_5_22190001 chr3R_22190001 RAL-181 1698 chr3R 22198130 22198161 chr3R 22198203 22198238 17 73 4.5 3.5 4.0 3.4 108 chr3R 22198130 intron,intron SKIP +,CR45224 - chr3R 22198184 intron,intron SKIP +,CR45224 - chr3R 22198238 intron,intron SKIP +,CR45224 - chr3R_17_22195001 chr3R_22195001 RAL-181 1699 chr3R 22239489 22239521 chr3R 22248549 22248562 roo 5 9052 2.0 0.0 1.0 2.5 9073 chr3R 22239489 intron SKIP + chr3R 22244026 intron SKIP + chr3R 22248562 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-181 1700 chr3R 22390897 22390908 chr3R 22390978 22390984 6 79 10.0 6.0 8.0 0.7 87 chr3R 22390897 intron CG7059 + chr3R 22390940 intron CG7059 + chr3R 22390984 intron CG7059 + chr3R_6_22390001 chr3R_22390001 RAL-181 1701 chr3R 22390910 22390922 chr3R 22390972 22391002 8 78 3.5 5.5 4.5 1.5 92 chr3R 22390910 intron CG7059 + chr3R 22390956 intron CG7059 + chr3R 22391002 intron CG7059 + chr3R_8_22390001 chr3R_22390001 RAL-181 1702 chr3R 22433089 22433104 chr3R 22433189 22433199 10 99 10.5 10.5 10.5 0.9 110 chr3R 22433089 intron CG13847 - chr3R 22433144 intron CG13847 - chr3R 22433199 intron CG13847 - chr3R_10_22430001 chr3R_22430001 RAL-181 1703 chr3R 22450539 22450579 chr3R 22453179 22453219 NOF 18 2638 2.0 2.5 2.2 5.6 2680 chr3R 22450539 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_18_22450001 chr3R_22450001 RAL-181 1704 chr3R 22580653 22580675 chr3R 22580731 22580758 11 79 0.5 4.0 2.2 3.4 105 chr3R 22580653 intergenic CSN6 +,CG33110 + chr3R 22580706 intergenic CSN6 +,CG33110 + chr3R 22580758 intergenic CSN6 +,CG33110 + chr3R_11_22580001 chr3R_22580001 RAL-181 1705 chr3R 22648333 22648342 chr3R 22648412 22648421 5 79 9.5 0.5 5.0 0.8 88 chr3R 22648333 intron wake + chr3R 22648377 intron wake + chr3R 22648421 intron wake + chr3R_5_22645001 chr3R_22645001 RAL-181 1706 chr3R 22648344 22648361 chr3R 22648410 22648429 7 75 3.5 0.5 2.0 2.3 85 chr3R 22648344 intron wake + chr3R 22648386 intron wake + chr3R 22648429 intron wake + chr3R_7_22645001 chr3R_22645001 RAL-181 1707 chr3R 22769099 22769125 chr3R 22769166 22769201 11 76 4.0 2.0 3.0 2.8 102 chr3R 22769099 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769150 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769201 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_11_22765001 chr3R_22765001 RAL-181 1708 chr3R 22797759 22797934 chr3R 22797845 22798030 32 88 0.0 0.0 0.0 32.0 271 chr3R 22797759 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798030 intergenic not near genes chr3R_32_22795001 chr3R_22795001 RAL-181 1709 chr3R 22827417 22827449 chr3R 22827493 22827525 8 75 5.0 4.0 4.5 1.5 108 chr3R 22827417 intergenic CR44350 - chr3R 22827471 intergenic CR44350 - chr3R 22827525 intergenic CR44350 - chr3R_8_22825001 chr3R_22825001 RAL-181 1710 chr3R 22863920 22863931 chr3R 22863998 22864008 9 77 4.0 12.5 8.2 1.0 88 chr3R 22863920 intergenic not near genes chr3R 22863964 intergenic not near genes chr3R 22864008 intergenic not near genes chr3R_9_22860001 chr3R_22860001 RAL-181 1711 chr3R 22867445 22867464 chr3R 22867571 22867581 9 127 7.0 5.0 6.0 1.3 136 chr3R 22867445 intergenic not near genes chr3R 22867513 intergenic not near genes chr3R 22867581 intergenic not near genes chr3R_9_22865001 chr3R_22865001 RAL-181 1712 chr3R 22880601 22880611 chr3R 22880678 22880688 4 77 14.0 4.5 9.2 0.4 87 chr3R 22880601 intergenic not near genes chr3R 22880644 intergenic not near genes chr3R 22880688 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-181 1713 chr3R 22880940 22880957 chr3R 22881073 22881094 5 137 3.5 1.0 2.2 1.6 154 chr3R 22880940 intergenic not near genes chr3R 22881017 intergenic not near genes chr3R 22881094 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-181 1714 chr3R 22881210 22881225 chr3R 22884905 22884925 Doc 6 3701 2.0 0.5 1.2 2.7 3715 chr3R 22881210 intergenic not near genes chr3R 22883068 intergenic not near genes chr3R 22884925 intergenic not near genes chr3R_6_22880001 chr3R_22880001 RAL-181 1715 chr3R 22919158 22919187 chr3R 22919255 22919258 9 92 2.5 6.0 4.2 1.7 100 chr3R 22919158 intron klg + chr3R 22919208 intron klg + chr3R 22919258 intron klg + chr3R_9_22915001 chr3R_22915001 RAL-181 1716 chr3R 5912374 5912374 chr3R 22941614 22941617 4 17029240 25.0 13.5 19.2 0.2 17029243 chr3R 5912374 intron CG34113 - chr3R 14426996 intron cv-c - chr3R 22941617 intron klg + chr3R_4_14425001 chr3R_14425001 RAL-181 1717 chr3R 23241971 23241980 chr3R 23242298 23242308 5 328 11.0 5.0 8.0 0.6 337 chr3R 23241971 intron CG4467 - chr3R 23242140 intron CG4467 - chr3R 23242308 intron CG4467 - chr3R_5_23240001 chr3R_23240001 RAL-181 1718 chr3R 23241985 23242003 chr3R 23242296 23242316 7 318 3.0 4.5 3.8 1.5 331 chr3R 23241985 intron CG4467 - chr3R 23242150 intron CG4467 - chr3R 23242316 intron CG4467 - chr3R_7_23240001 chr3R_23240001 RAL-181 1719 chr3R 23311681 23311708 chr3R 23311775 23311793 7 90 1.5 3.0 2.2 2.2 112 chr3R 23311681 intron pnt - chr3R 23311737 intron pnt - chr3R 23311793 intron pnt - chr3R_7_23310001 chr3R_23310001 RAL-181 1720 chr3R 23335432 23335465 chr3R 23335510 23335543 13 77 6.5 2.5 4.5 2.4 111 chr3R 23335432 intron pnt - chr3R 23335488 intron pnt - chr3R 23335543 intron pnt - chr3R_13_23335001 chr3R_23335001 RAL-181 1721 chr3R 23558398 23558420 chr3R 23560179 23560201 Bari1 6 1781 4.0 1.5 2.8 1.6 1803 chr3R 23558398 intron beat-IV + chr3R 23559300 intron beat-IV + chr3R 23560201 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-181 1722 chr3R 23575683 23575717 chr3R 23575769 23575802 16 86 5.0 2.5 3.8 3.3 119 chr3R 23575683 intron beat-IV + chr3R 23575742 intron beat-IV + chr3R 23575802 intron beat-IV + chr3R_16_23575001 chr3R_23575001 RAL-181 1723 chr3R 23627563 23627636 chr3R 23627640 23627687 5 72 0.0 0.0 0.0 5.0 124 chr3R 23627563 intron CG31145 - chr3R 23627625 intron CG31145 - chr3R 23627687 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-181 1724 chr3R 3586634 3586638 chr3R 23642155 23642167 6 20055525 16.0 18.0 17.0 0.3 20055533 chr3R 3586634 intron Parp - chr3R 13614400 intergenic not near genes chr3R 23642167 intron CG31145 - chr3R_6_13610001 chr3R_13610001 RAL-181 1725 chr3R 23684697 23684728 chr3R 23685183 23685212 roo 11 479 3.5 8.5 6.0 1.6 515 chr3R 23684697 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685212 exon CG18754 + chr3R_11_23680001 chr3R_23680001 RAL-181 1726 chr3R 23685555 23685587 chr3R 23685689 23685723 9 133 5.0 4.0 4.5 1.6 168 chr3R 23685555 exon CG18754 + chr3R 23685639 exon CG18754 + chr3R 23685723 exon CG18754 + chr3R_9_23685001 chr3R_23685001 RAL-181 1727 chr3R 23865030 23865065 chr3R 23865118 23865153 13 86 3.0 5.5 4.2 2.5 123 chr3R 23865030 intron Pli - chr3R 23865092 intron Pli - chr3R 23865153 intron Pli - chr3R_13_23865001 chr3R_23865001 RAL-181 1728 chr3R 23893784 23893817 chr3R 23893883 23893918 14 100 3.0 5.0 4.0 2.8 134 chr3R 23893784 intergenic sba -,tbrd-1 - chr3R 23893851 intergenic sba -,tbrd-1 - chr3R 23893918 intergenic sba - chr3R_14_23890001 chr3R_23890001 RAL-181 1729 chr3R 23941257 23941283 chr3R 23941333 23941359 8 73 3.0 4.0 3.5 1.8 102 chr3R 23941257 intron Gdh - chr3R 23941308 intron Gdh - chr3R 23941359 intron Gdh - chr3R_8_23940001 chr3R_23940001 RAL-181 1730 chr3R 23944911 23944936 chr3R 23944995 23945013 15 83 6.5 4.5 5.5 2.3 102 chr3R 23944911 intron CG12268 - chr3R 23944962 intron CG12268 - chr3R 23945013 intron CG12268 - chr3R_15_23940001 chr3R_23940001 RAL-181 1731 chr3R 23949041 23949069 chr3R 23949118 23949146 9 76 3.0 4.5 3.8 1.9 105 chr3R 23949041 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_9_23945001 chr3R_23945001 RAL-181 1732 chr3R 24072084 24072117 chr3R 24072522 24072551 jockey 17 436 8.5 8.0 8.2 1.8 467 chr3R 24072084 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072551 intron 4EHP - chr3R_17_24070001 chr3R_24070001 RAL-181 1733 chr3R 24076919 24076947 chr3R 24078385 24078399 hobo 13 1465 3.5 6.0 4.8 2.2 1480 chr3R 24076919 intron 4EHP - chr3R 24077659 intron 4EHP - chr3R 24078399 intron 4EHP - chr3R_13_24075001 chr3R_24075001 RAL-181 1734 chr3R 24199740 24199748 chr3R 24199820 24199828 7 80 7.0 4.0 5.5 1.1 88 chr3R 24199740 intron twin - chr3R 24199784 intron twin - chr3R 24199828 intron twin - chr3R_7_24195001 chr3R_24195001 RAL-181 1735 chr3R 24199749 24199772 chr3R 24199817 24199852 7 78 3.0 3.0 3.0 1.8 103 chr3R 24199749 intron twin - chr3R 24199800 intron twin - chr3R 24199852 intron twin - chr3R_7_24195001 chr3R_24195001 RAL-181 1736 chr3R 24207215 24207246 chr3R 24212291 24212322 flea 12 5074 11.0 5.5 8.2 1.3 5107 chr3R 24207215 intron twin - chr3R 24209768 intron twin - chr3R 24212322 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-181 1737 chr3R 24434240 24434271 chr3R 24434318 24434349 11 74 4.5 4.5 4.5 2.0 109 chr3R 24434240 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434349 intron nAChRalpha1 - chr3R_11_24430001 chr3R_24430001 RAL-181 1738 chr3R 24466466 24466479 chr3R 24466544 24466547 9 76 7.0 4.0 5.5 1.4 81 chr3R 24466466 intergenic not near genes chr3R 24466506 intergenic not near genes chr3R 24466547 intergenic not near genes chr3R_9_24465001 chr3R_24465001 RAL-181 1739 chr3R 24493283 24493310 chr3R 24493512 24493538 BS 12 228 3.5 5.5 4.5 2.2 255 chr3R 24493283 intergenic not near genes chr3R 24493410 intergenic not near genes chr3R 24493538 intergenic not near genes chr3R_12_24490001 chr3R_24490001 RAL-181 1740 chr3R 24624378 24624383 chr3R 24624465 24624472 4 88 0.0 5.0 2.5 1.1 94 chr3R 24624378 intron Syx18 - chr3R 24624425 intron Syx18 - chr3R 24624472 intron Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-181 1741 chr3R 24670053 24670085 chr3R 24670163 24670195 5 108 2.5 0.0 1.2 2.3 142 chr3R 24670053 intron slo + chr3R 24670124 intron slo + chr3R 24670195 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-181 1742 chr3R 24730103 24730120 chr3R 24732471 24732483 Doc 6 2371 2.5 2.0 2.2 1.9 2380 chr3R 24730103 intron tok + chr3R 24731293 intron tok + chr3R 24732483 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-181 1743 chr3R 24743047 24743061 chr3R 24743132 24743146 6 84 3.0 7.5 5.2 1.0 99 chr3R 24743047 intron tok + chr3R 24743096 intron tok + chr3R 24743146 intron tok + chr3R_6_24740001 chr3R_24740001 RAL-181 1744 chr3R 24912479 24912514 chr3R 24912561 24912596 7 78 2.5 1.5 2.0 2.3 117 chr3R 24912479 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912596 intergenic CR44267 + chr3R_7_24910001 chr3R_24910001 RAL-181 1745 chr3R 24927125 24927154 chr3R 24931916 24931944 Doc 15 4790 2.5 2.5 2.5 4.3 4819 chr3R 24927125 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931944 intergenic CG11771 + chr3R_15_24925001 chr3R_24925001 RAL-181 1746 chr3R 24973947 24973972 chr3R 24974023 24974048 13 74 9.5 7.0 8.2 1.4 101 chr3R 24973947 intergenic not near genes chr3R 24973998 intergenic not near genes chr3R 24974048 intergenic not near genes chr3R_13_24970001 chr3R_24970001 RAL-181 1747 chr3R 24973973 24973984 chr3R 24974021 24974060 8 70 7.0 7.0 7.0 1.0 87 chr3R 24973973 intergenic not near genes chr3R 24974016 intergenic not near genes chr3R 24974060 intergenic not near genes chr3R_8_24970001 chr3R_24970001 RAL-181 1748 chr3R 25159505 25159536 chr3R 25159593 25159613 15 85 3.5 4.0 3.8 3.1 108 chr3R 25159505 intergenic not near genes chr3R 25159559 intergenic not near genes chr3R 25159613 intergenic not near genes chr3R_15_25155001 chr3R_25155001 RAL-181 1749 chr3R 25166364 25166395 chr3R 25166439 25166471 6 76 0.5 2.0 1.2 2.7 107 chr3R 25166364 intergenic not near genes chr3R 25166418 intergenic not near genes chr3R 25166471 intergenic not near genes chr3R_6_25165001 chr3R_25165001 RAL-181 1750 chr3R 25200551 25200571 chr3R 25200629 25200650 14 80 4.5 9.5 7.0 1.8 99 chr3R 25200551 intron,intron Cad96Ca -,CG13654 + chr3R 25200600 intron,intron Cad96Ca -,CG13654 + chr3R 25200650 intron,intron Cad96Ca -,CG13654 + chr3R_14_25200001 chr3R_25200001 RAL-181 1751 chr3R 25302134 25302151 chr3R 25302354 25302367 5 217 21.5 6.5 14.0 0.3 233 chr3R 25302134 exon CG13659 + chr3R 25302250 exon CG13659 + chr3R 25302367 intergenic CG13659 +,CG31370 + chr3R_5_25300001 chr3R_25300001 RAL-181 1752 chr3R 25368473 25368500 chr3R 25368591 25368601 4 114 3.5 0.0 1.8 1.4 128 chr3R 25368473 intron Fur1 - chr3R 25368537 intron Fur1 - chr3R 25368601 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-181 1753 chr3R 25404951 25404984 chr3R 25405040 25405062 12 86 4.0 4.0 4.0 2.4 111 chr3R 25404951 intron Fur1 - chr3R 25405006 intron Fur1 - chr3R 25405062 intron Fur1 - chr3R_12_25405001 chr3R_25405001 RAL-181 1754 chr3R 25436496 25436516 chr3R 25436590 25436610 11 89 4.5 3.0 3.8 2.3 114 chr3R 25436496 intron Fur1 - chr3R 25436553 intron Fur1 - chr3R 25436610 intron Fur1 - chr3R_11_25435001 chr3R_25435001 RAL-181 1755 chr3R 25669066 25669098 chr3R 25669160 25669191 11 92 2.0 2.0 2.0 3.7 125 chr3R 25669066 intron Lgr3 + chr3R 25669128 intron Lgr3 + chr3R 25669191 intron Lgr3 + chr3R_11_25665001 chr3R_25665001 RAL-181 1756 chr3R 25671242 25671250 chr3R 25671340 25671348 6 96 6.5 0.0 3.2 1.4 106 chr3R 25671242 intron Lgr3 + chr3R 25671295 intron Lgr3 + chr3R 25671348 intron Lgr3 + chr3R_6_25670001 chr3R_25670001 RAL-181 1757 chr3R 25725827 25725859 chr3R 25734987 25735017 roo 4 9160 1.0 1.0 1.0 2.0 9190 chr3R 25725827 intron LpR2 - chr3R 25730422 intron LpR2 - chr3R 25735017 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-181 1758 chr3R 25765877 25765911 chr3R 25765956 25765990 18 74 7.5 6.5 7.0 2.2 113 chr3R 25765877 intergenic not near genes chr3R 25765934 intergenic not near genes chr3R 25765990 intergenic not near genes chr3R_18_25765001 chr3R_25765001 RAL-181 1759 chr3R 25784334 25784346 chr3R 25784676 25784688 4 341 12.0 5.0 8.5 0.4 354 chr3R 25784334 intergenic not near genes chr3R 25784511 intergenic not near genes chr3R 25784688 intergenic not near genes chr3R_4_25780001 chr3R_25780001 RAL-181 1760 chr3R 25784348 25784363 chr3R 25784675 25784705 8 336 6.0 5.0 5.5 1.2 357 chr3R 25784348 intergenic not near genes chr3R 25784526 intergenic not near genes chr3R 25784705 intergenic not near genes chr3R_8_25780001 chr3R_25780001 RAL-181 1761 chr3R 25801266 25801293 chr3R 25802250 25802277 13 982 2.0 4.0 3.0 3.2 1011 chr3R 25801266 intergenic not near genes chr3R 25801772 intergenic not near genes chr3R 25802277 intergenic not near genes chr3R_13_25800001 chr3R_25800001 RAL-181 1762 chr3R 25832702 25832723 chr3R 25841876 25841905 roo 12 9180 3.5 6.0 4.8 2.1 9203 chr3R 25832702 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-181 1763 chr3R 25846548 25846569 chr3R 25846626 25846647 5 78 4.0 4.5 4.2 1.0 99 chr3R 25846548 intergenic CR45655 +,CR45654 + chr3R 25846598 intergenic CR45655 +,CR45654 + chr3R 25846647 intergenic CR45655 +,CR45654 + chr3R_5_25845001 chr3R_25845001 RAL-181 1764 chr3R 25927510 25927538 chr3R 25927588 25927620 8 80 2.5 5.0 3.8 1.7 110 chr3R 25927510 intron CCAP-R - chr3R 25927565 intron CCAP-R - chr3R 25927620 intron CCAP-R - chr3R_8_25925001 chr3R_25925001 RAL-181 1765 chr3R 26060405 26060431 chr3R 26060490 26060517 16 85 6.5 6.0 6.2 2.2 112 chr3R 26060405 intron CG14544 + chr3R 26060461 intron CG14544 + chr3R 26060517 intron CG14544 + chr3R_16_26060001 chr3R_26060001 RAL-181 1766 chr3R 26121951 26121971 chr3R 26122047 26122068 6 96 1.5 3.0 2.2 1.9 117 chr3R 26121951 intron CG31324 + chr3R 26122010 intron CG31324 + chr3R 26122068 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-181 1767 chr3R 26121972 26121981 chr3R 26122045 26122078 6 93 1.5 3.0 2.2 1.9 106 chr3R 26121972 intron CG31324 + chr3R 26122025 intron CG31324 + chr3R 26122078 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-181 1768 chr3R 26122464 26122478 chr3R 26122539 26122551 6 74 7.5 12.0 9.8 0.6 87 chr3R 26122464 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122551 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-181 1769 chr3R 26235501 26235522 chr3R 26235569 26235582 10 70 3.0 5.0 4.0 2.0 81 chr3R 26235501 5` UTR CR42745 + chr3R 26235542 5` UTR CR42745 + chr3R 26235582 5` UTR CR42745 + chr3R_10_26235001 chr3R_26235001 RAL-181 1770 chr3R 26292112 26292138 chr3R 26292192 26292213 8 79 1.0 5.5 3.2 1.9 101 chr3R 26292112 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292213 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-181 1771 chr3R 26301829 26301859 chr3R 26301910 26301940 8 78 3.0 1.0 2.0 2.7 111 chr3R 26301829 intergenic not near genes chr3R 26301884 intergenic not near genes chr3R 26301940 intergenic not near genes chr3R_8_26300001 chr3R_26300001 RAL-181 1772 chr3R 26302117 26302143 chr3R 26302324 26302350 11 206 3.0 5.5 4.2 2.1 233 chr3R 26302117 intergenic not near genes chr3R 26302234 intergenic not near genes chr3R 26302350 intergenic not near genes chr3R_11_26300001 chr3R_26300001 RAL-181 1773 chr3R 26376327 26376358 chr3R 26385482 26385514 roo 13 9157 5.0 0.5 2.8 3.4 9187 chr3R 26376327 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_13_26380001 chr3R_26380001 RAL-181 1774 chr3R 26387324 26387351 chr3R 26387394 26387426 9 73 7.0 3.5 5.2 1.5 102 chr3R 26387324 intergenic not near genes chr3R 26387375 intergenic not near genes chr3R 26387426 intergenic not near genes chr3R_9_26385001 chr3R_26385001 RAL-181 1775 chr3R 26463780 26463808 chr3R 26463953 26463981 8 172 2.5 4.5 3.5 1.8 201 chr3R 26463780 intron CG5455 + chr3R 26463880 intron CG5455 + chr3R 26463981 intron CG5455 + chr3R_8_26460001 chr3R_26460001 RAL-181 1776 chr3R 26482360 26482372 chr3R 26482437 26482450 6 76 14.5 5.0 9.8 0.6 90 chr3R 26482360 intron plum - chr3R 26482405 intron plum - chr3R 26482450 intron plum - chr3R_6_26480001 chr3R_26480001 RAL-181 1777 chr3R 26482376 26482390 chr3R 26482435 26482456 8 68 6.0 5.0 5.5 1.2 80 chr3R 26482376 intron plum - chr3R 26482416 intron plum - chr3R 26482456 intron plum - chr3R_8_26480001 chr3R_26480001 RAL-181 1778 chr3R 26510250 26510282 chr3R 26510362 26510394 15 107 3.0 4.5 3.8 3.1 144 chr3R 26510250 intron plum - chr3R 26510322 intron plum - chr3R 26510394 intron plum - chr3R_15_26510001 chr3R_26510001 RAL-181 1779 chr3R 26510527 26510535 chr3R 26519582 26519590 roo 5 9055 1.5 4.0 2.8 1.3 9063 chr3R 26510527 intron plum - chr3R 26515058 intron plum - chr3R 26519590 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-181 1780 chr3R 26546008 26546014 chr3R 26546190 26546196 4 182 0.0 3.0 1.5 1.6 188 chr3R 26546008 intron scrib + chr3R 26546102 intron scrib + chr3R 26546196 intron scrib + chr3R_4_26545001 chr3R_26545001 RAL-181 1781 chr3R 26641640 26641663 chr3R 26641727 26641749 6 82 3.5 6.5 5.0 1.0 109 chr3R 26641640 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641749 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-181 1782 chr3R 26642727 26642756 chr3R 26643120 26643150 jockey 10 393 6.5 3.5 5.0 1.7 423 chr3R 26642727 intergenic not near genes chr3R 26642938 intergenic not near genes chr3R 26643150 intergenic not near genes chr3R_10_26640001 chr3R_26640001 RAL-181 1783 chr3R 26659942 26659974 chr3R 26660043 26660075 10 100 2.5 5.0 3.8 2.1 133 chr3R 26659942 intron beat-VII - chr3R 26660008 intron beat-VII - chr3R 26660075 intron beat-VII - chr3R_10_26660001 chr3R_26660001 RAL-181 1784 chr3R 26685856 26685892 chr3R 26686036 26686071 16 176 5.5 4.5 5.0 2.7 215 chr3R 26685856 intergenic not near genes chr3R 26685964 intergenic not near genes chr3R 26686071 intergenic not near genes chr3R_16_26685001 chr3R_26685001 RAL-181 1785 chr3R 26770241 26770273 chr3R 26770318 26770336 16 74 4.0 4.5 4.2 3.1 95 chr3R 26770241 intergenic CR45563 + chr3R 26770288 intergenic CR45563 + chr3R 26770336 intergenic not near genes chr3R_16_26770001 chr3R_26770001 RAL-181 1786 chr3R 26810552 26810584 chr3R 26811037 26811069 roo 17 482 6.0 7.0 6.5 2.3 517 chr3R 26810552 intron Tl + chr3R 26810810 intron Tl + chr3R 26811069 intron Tl + chr3R_17_26810001 chr3R_26810001 RAL-181 1787 chr3R 27007410 27007435 chr3R 27016545 27016570 roo 5 9135 1.5 3.5 2.5 1.4 9160 chr3R 27007410 intron RYa-R + chr3R 27011990 intron RYa-R + chr3R 27016570 intron RYa-R + chr3R_5_27010001 chr3R_27010001 RAL-181 1788 chr3R 27027690 27027697 chr3R 27027772 27027779 5 82 3.5 3.0 3.2 1.2 89 chr3R 27027690 intron RYa-R + chr3R 27027734 intron RYa-R + chr3R 27027779 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-181 1789 chr3R 27028724 27028753 chr3R 27028800 27028832 11 76 2.0 3.0 2.5 3.1 108 chr3R 27028724 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028832 intron RYa-R + chr3R_11_27025001 chr3R_27025001 RAL-181 1790 chr3R 27051665 27051683 chr3R 27051752 27051774 4 90 3.0 0.0 1.5 1.6 109 chr3R 27051665 intron RYa-R + chr3R 27051720 intron RYa-R + chr3R 27051774 intron RYa-R + chr3R_4_27050001 chr3R_27050001 RAL-181 1791 chr3R 27077101 27077130 chr3R 27077181 27077210 6 80 4.5 4.0 4.2 1.2 109 chr3R 27077101 intron CG14257 + chr3R 27077156 intron CG14257 + chr3R 27077210 intron CG14257 + chr3R_6_27075001 chr3R_27075001 RAL-181 1792 chr3R 27133527 27133543 chr3R 27133639 27133649 4 112 1.0 2.5 1.8 1.4 122 chr3R 27133527 intron CG6051 - chr3R 27133588 intron CG6051 - chr3R 27133649 intron CG6051 - chr3R_4_27130001 chr3R_27130001 RAL-181 1793 chr3R 27140516 27140539 chr3R 27148126 27148149 412 10 7610 8.0 8.0 8.0 1.1 7633 chr3R 27140516 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148149 intron CG6051 - chr3R_10_27140001 chr3R_27140001 RAL-181 1794 chr3R 27342791 27342824 chr3R 27351372 27351405 Tirant 12 8581 3.5 3.5 3.5 2.7 8614 chr3R 27342791 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_12_27345001 chr3R_27345001 RAL-181 1795 chr3R 27356490 27356521 chr3R 27356567 27356601 15 80 3.0 1.5 2.2 4.7 111 chr3R 27356490 intron CG42534 + chr3R 27356546 intron CG42534 + chr3R 27356601 intron CG42534 + chr3R_15_27355001 chr3R_27355001 RAL-181 1796 chr3R 27377480 27377502 chr3R 27377565 27377569 10 82 3.0 8.5 5.8 1.5 89 chr3R 27377480 3` UTR side - chr3R 27377524 3` UTR side - chr3R 27377569 3` UTR side - chr3R_10_27375001 chr3R_27375001 RAL-181 1797 chr3R 27456134 27456163 chr3R 27456221 27456246 14 84 4.5 2.0 3.2 3.3 112 chr3R 27456134 intergenic not near genes chr3R 27456190 intergenic not near genes chr3R 27456246 intergenic not near genes chr3R_14_27455001 chr3R_27455001 RAL-181 1798 chr3R 27457863 27457899 chr3R 27457955 27457989 12 88 5.0 2.5 3.8 2.5 126 chr3R 27457863 intergenic not near genes chr3R 27457926 intergenic not near genes chr3R 27457989 intergenic not near genes chr3R_12_27455001 chr3R_27455001 RAL-181 1799 chr3R 27496593 27496597 chr3R 27496696 27496702 4 104 5.0 5.0 5.0 0.7 109 chr3R 27496593 intergenic not near genes chr3R 27496648 intergenic not near genes chr3R 27496702 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-181 1800 chr3R 27597570 27597595 chr3R 27597651 27597668 14 80 5.0 6.0 5.5 2.2 98 chr3R 27597570 3` UTR dsd - chr3R 27597619 3` UTR dsd - chr3R 27597668 3` UTR dsd - chr3R_14_27595001 chr3R_27595001 RAL-181 1801 chr3R 27660713 27660748 chr3R 27660789 27660824 20 73 1.0 6.5 3.8 4.2 111 chr3R 27660713 intergenic not near genes chr3R 27660768 intergenic not near genes chr3R 27660824 intergenic not near genes chr3R_20_27660001 chr3R_27660001 RAL-181 1802 chr3R 27705362 27705391 chr3R 27705442 27705460 9 77 3.0 6.0 4.5 1.6 98 chr3R 27705362 exon CG12428 - chr3R 27705411 intron CG12428 - chr3R 27705460 intron CG12428 - chr3R_9_27705001 chr3R_27705001 RAL-181 1803 chr3R 27725571 27725595 chr3R 27731001 27731037 I-element 7 5440 5.5 1.0 3.2 1.7 5466 chr3R 27725571 intergenic not near genes chr3R 27728304 intergenic not near genes chr3R 27731037 intergenic not near genes chr3R_7_27725001 chr3R_27725001 RAL-181 1804 chr3R 27749378 27749403 chr3R 27749481 27749510 10 104 2.5 2.0 2.2 3.1 132 chr3R 27749378 intergenic not near genes chr3R 27749444 intergenic not near genes chr3R 27749510 intergenic not near genes chr3R_10_27745001 chr3R_27745001 RAL-181 1805 chr3R 27759293 27759329 chr3R 27759370 27759402 23 73 4.0 5.5 4.8 4.0 109 chr3R 27759293 intergenic not near genes chr3R 27759348 intergenic not near genes chr3R 27759402 intergenic not near genes chr3R_23_27755001 chr3R_27755001 RAL-181 1806 chr3R 27779279 27779289 chr3R 27779356 27779366 6 76 8.0 9.0 8.5 0.6 87 chr3R 27779279 exon CG34353 - chr3R 27779322 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_6_27775001 chr3R_27775001 RAL-181 1807 chr3R 27786871 27786897 chr3R 27787016 27787040 8 142 10.0 7.5 8.8 0.8 169 chr3R 27786871 intron CG34353 - chr3R 27786956 intron CG34353 - chr3R 27787040 intron CG34353 - chr3R_8_27785001 chr3R_27785001 RAL-181 1808 chr3R 27799939 27799961 chr3R 27800019 27800043 7 80 3.5 3.5 3.5 1.6 104 chr3R 27799939 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800043 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-181 1809 chr3R 27812452 27812460 chr3R 27812502 27812537 8 69 3.5 7.0 5.2 1.3 85 chr3R 27812452 intron CG34353 - chr3R 27812494 intron CG34353 - chr3R 27812537 intron CG34353 - chr3R_8_27810001 chr3R_27810001 RAL-181 1810 chr3R 27856759 27856785 chr3R 27858241 27858261 hopper2 12 1480 8.0 4.0 6.0 1.7 1502 chr3R 27856759 intron CG34353 - chr3R 27857510 intron CG34353 - chr3R 27858261 intron CG34353 - chr3R_12_27855001 chr3R_27855001 RAL-181 1811 chr3R 27862954 27862986 chr3R 27868259 27868285 Transpac 8 5302 3.0 1.5 2.2 2.5 5331 chr3R 27862954 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-181 1812 chr3R 27875699 27875722 chr3R 27882754 27882767 297 8 7052 6.5 8.0 7.2 1.0 7068 chr3R 27875699 intron CG34353 - chr3R 27879233 intron CG34353 - chr3R 27882767 intron CG34353 - chr3R_8_27875001 chr3R_27875001 RAL-181 1813 chr3R 27946185 27946204 chr3R 27946252 27946263 6 71 1.5 10.5 6.0 0.9 78 chr3R 27946185 intron mfrn - chr3R 27946224 intron mfrn - chr3R 27946263 intron mfrn - chr3R_6_27945001 chr3R_27945001 RAL-181 1814 chr3R 28068490 28068527 chr3R 28073932 28073969 I-element 15 5439 3.5 3.5 3.5 3.3 5479 chr3R 28068490 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073969 intron CG34362 + chr3R_15_28070001 chr3R_28070001 RAL-181 1815 chr3R 28103336 28103358 chr3R 28103416 28103437 10 82 2.5 4.0 3.2 2.4 101 chr3R 28103336 intergenic not near genes chr3R 28103386 intergenic not near genes chr3R 28103437 intergenic not near genes chr3R_10_28100001 chr3R_28100001 RAL-181 1816 chr3R 28126735 28126759 chr3R 28126815 28126844 11 83 4.5 3.0 3.8 2.3 109 chr3R 28126735 intergenic not near genes chr3R 28126790 intergenic not near genes chr3R 28126844 intergenic not near genes chr3R_11_28125001 chr3R_28125001 RAL-181 1817 chr3R 28131439 28131457 chr3R 28131611 28131639 8 179 2.0 4.5 3.2 1.9 200 chr3R 28131439 intergenic not near genes chr3R 28131539 intergenic not near genes chr3R 28131639 intergenic not near genes chr3R_8_28130001 chr3R_28130001 RAL-181 1818 chr3R 28152345 28152361 chr3R 28152421 28152438 6 76 7.0 2.5 4.8 1.0 93 chr3R 28152345 intron CG34354 + chr3R 28152392 intron CG34354 + chr3R 28152438 intron CG34354 + chr3R_6_28150001 chr3R_28150001 RAL-181 1819 chr3R 28173669 28173702 chr3R 28181099 28181129 mdg1 11 7429 4.5 1.0 2.8 2.9 7460 chr3R 28173669 intron CG34354 + chr3R 28177399 intron CG34354 + chr3R 28181129 intron CG34354 + chr3R_11_28175001 chr3R_28175001 RAL-181 1820 chr3R 28215826 28215850 chr3R 28215892 28215927 12 74 2.5 5.0 3.8 2.5 101 chr3R 28215826 intron CG34354 + chr3R 28215876 intron CG34354 + chr3R 28215927 intron CG34354 + chr3R_12_28215001 chr3R_28215001 RAL-181 1821 chr3R 28253336 28253370 chr3R 28255846 28255879 jockey 18 2508 7.5 6.0 6.8 2.3 2543 chr3R 28253336 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_18_28250001 chr3R_28250001 RAL-181 1822 chr3R 28302111 28302134 chr3R 28302545 28302573 jockey 6 438 2.0 6.0 4.0 1.2 462 chr3R 28302111 intergenic not near genes chr3R 28302342 intergenic not near genes chr3R 28302573 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-181 1823 chr3R 28407702 28407742 chr3R 28407788 28407822 20 84 3.0 5.0 4.0 4.0 120 chr3R 28407702 intergenic not near genes chr3R 28407762 intergenic not near genes chr3R 28407822 intergenic not near genes chr3R_20_28405001 chr3R_28405001 RAL-181 1824 chr3R 28426492 28426503 chr3R 28426559 28426589 9 81 0.0 8.5 4.2 1.7 97 chr3R 28426492 intron beat-VI + chr3R 28426540 intron beat-VI + chr3R 28426589 intron beat-VI + chr3R_9_28425001 chr3R_28425001 RAL-181 1825 chr3R 28687089 28687127 chr3R 28687168 28687196 11 74 5.0 7.0 6.0 1.6 107 chr3R 28687089 intron CG9990 + chr3R 28687142 intron CG9990 + chr3R 28687196 intron CG9990 + chr3R_11_28685001 chr3R_28685001 RAL-181 1826 chr3R 28758283 28758313 chr3R 28763900 28763919 roo 6 5614 5.5 0.0 2.8 1.6 5636 chr3R 28758283 intergenic aqrs - chr3R 28761101 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_6_28760001 chr3R_28760001 RAL-181 1827 chr3R 28792882 28792903 chr3R 28797972 28797998 jockey 8 5093 6.0 7.0 6.5 1.1 5116 chr3R 28792882 intergenic not near genes chr3R 28795440 intergenic not near genes chr3R 28797998 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-181 1828 chr3R 21907534 21907536 chr3R 28831801 28831801 38 6924266 32.0 25.5 28.8 1.3 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-181 1829 chr3R 21907534 21907536 chr3R 28831802 28831802 28 6924267 32.0 25.5 28.8 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-181 1830 chr3R 28989906 28989934 chr3R 28990081 28990109 13 170 1.0 6.0 3.5 2.9 203 chr3R 28989906 intergenic not near genes chr3R 28990008 intergenic not near genes chr3R 28990109 intergenic not near genes chr3R_13_28990001 chr3R_28990001 RAL-181 1831 chr3R 29032751 29032774 chr3R 29032821 29032829 11 68 7.0 3.0 5.0 1.8 78 chr3R 29032751 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032790 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032829 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_11_29030001 chr3R_29030001 RAL-181 1832 chr3R 29054024 29054055 chr3R 29054095 29054130 11 74 1.0 1.5 1.2 5.0 106 chr3R 29054024 intergenic CG11842 +,CG11843 + chr3R 29054077 intergenic CG11842 +,CG11843 + chr3R 29054130 intergenic CG11843 +,CG11842 + chr3R_11_29050001 chr3R_29050001 RAL-181 1833 chr3R 29070066 29070079 chr3R 29070147 29070156 4 80 1.0 1.5 1.2 1.8 90 chr3R 29070066 intron CG11873 + chr3R 29070111 intron CG11873 + chr3R 29070156 intron CG11873 + chr3R_4_29070001 chr3R_29070001 RAL-181 1834 chr3R 29079398 29079404 chr3R 29080770 29080776 NOF 6 1370 0.0 3.0 1.5 2.4 1378 chr3R 29079398 intron CG11873 + chr3R 29080087 intron CG11873 + chr3R 29080776 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-181 1835 chr3R 29213060 29213091 chr3R 29213143 29213174 20 80 3.0 7.5 5.2 3.2 114 chr3R 29213060 intergenic not near genes chr3R 29213117 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_20_29210001 chr3R_29210001 RAL-181 1836 chr3R 29237261 29237281 chr3R 29239282 29239302 7 2020 13.5 8.5 11.0 0.6 2041 chr3R 29237261 exon CG11951 - chr3R 29238282 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-181 1837 chr3R 29240315 29240332 chr3R 29240399 29240416 6 84 1.0 0.5 0.8 3.3 101 chr3R 29240315 5` UTR CG31427 - chr3R 29240366 intergenic CG31427 -,CG31445 - chr3R 29240416 intergenic CG31427 -,CG31445 - chr3R_6_29240001 chr3R_29240001 RAL-181 1838 chr3R 29355960 29355977 chr3R 29356039 29356057 4 80 8.5 2.0 5.2 0.6 97 chr3R 29355960 intergenic CR45547 - chr3R 29356008 intergenic CR45547 - chr3R 29356057 intergenic CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-181 1839 chr3R 29363080 29363112 chr3R 29363372 29363403 14 286 3.5 3.5 3.5 3.1 323 chr3R 29363080 intergenic not near genes chr3R 29363242 intergenic not near genes chr3R 29363403 intergenic not near genes chr3R_14_29360001 chr3R_29360001 RAL-181 1840 chr3R 29406612 29406648 chr3R 29407898 29407934 jockey 12 1283 6.5 3.0 4.8 2.1 1322 chr3R 29406612 intron Ptp99A + chr3R 29407273 intron Ptp99A + chr3R 29407934 intron Ptp99A + chr3R_12_29405001 chr3R_29405001 RAL-181 1841 chr3R 29498900 29498935 chr3R 29499030 29499065 9 130 2.5 0.5 1.5 3.6 165 chr3R 29498900 3` UTR CG2010 + chr3R 29498982 intergenic Trc8 -,CG2010 + chr3R 29499065 3` UTR Trc8 - chr3R_9_29495001 chr3R_29495001 RAL-181 1842 chr3R 29505914 29505920 chr3R 29505978 29505994 8 74 5.0 5.5 5.2 1.3 80 chr3R 29505914 intergenic not near genes chr3R 29505954 intergenic not near genes chr3R 29505994 intergenic not near genes chr3R_8_29505001 chr3R_29505001 RAL-181 1843 chr3R 29566380 29566416 chr3R 29566457 29566492 15 75 0.0 2.5 1.2 6.8 112 chr3R 29566380 intergenic not near genes chr3R 29566436 intergenic not near genes chr3R 29566492 intergenic not near genes chr3R_15_29565001 chr3R_29565001 RAL-181 1844 chr3R 29581537 29581553 chr3R 29581618 29581634 7 81 3.0 3.5 3.2 1.7 97 chr3R 29581537 intergenic not near genes chr3R 29581586 intergenic not near genes chr3R 29581634 intergenic not near genes chr3R_7_29580001 chr3R_29580001 RAL-181 1845 chr3R 29604122 29604134 chr3R 29604201 29604210 8 77 4.0 0.0 2.0 2.7 88 chr3R 29604122 intron alph + chr3R 29604166 intron alph + chr3R 29604210 intron alph + chr3R_8_29600001 chr3R_29600001 RAL-181 1846 chr3R 29738265 29738298 chr3R 29739732 29739743 hobo 11 1464 5.0 8.0 6.5 1.5 1478 chr3R 29738265 intergenic CG1969 +,CG7598 + chr3R 29739004 intron CG1969 + chr3R 29739743 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-181 1847 chr3R 29758940 29758971 chr3R 29759015 29759049 20 73 3.5 4.0 3.8 4.2 109 chr3R 29758940 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_20_29755001 chr3R_29755001 RAL-181 1848 chr3R 29882021 29882048 chr3R 29891177 29891204 roo 14 9154 3.0 7.5 5.2 2.3 9183 chr3R 29882021 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891204 intron CG31038 + chr3R_14_29885001 chr3R_29885001 RAL-181 1849 chr3R 29923607 29923631 chr3R 29925459 29925478 9 1849 9.5 48.0 28.8 0.3 1871 chr3R 29923607 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924542 exon Jon99Cii - chr3R 29925478 exon Jon99Ci - chr3R_9_29920001 chr3R_29920001 RAL-181 1850 chr3R 29950575 29950599 chr3R 29950652 29950666 12 74 3.5 2.0 2.8 3.2 91 chr3R 29950575 intergenic TkR99D - chr3R 29950620 intergenic TkR99D - chr3R 29950666 intergenic TkR99D - chr3R_12_29950001 chr3R_29950001 RAL-181 1851 chr3R 30001731 30001763 chr3R 30001806 30001839 16 71 4.0 4.0 4.0 3.2 108 chr3R 30001731 intron Tace + chr3R 30001785 intron Tace + chr3R 30001839 intron Tace + chr3R_16_30000001 chr3R_30000001 RAL-181 1852 chr3R 30032166 30032182 chr3R 30032244 30032256 11 77 3.0 4.0 3.5 2.4 90 chr3R 30032166 intron Axn + chr3R 30032211 intron Axn + chr3R 30032256 intron Axn + chr3R_11_30030001 chr3R_30030001 RAL-181 1853 chr3R 30084865 30084879 chr3R 30086329 30086346 hobo 12 1466 1.0 10.0 5.5 1.8 1481 chr3R 30084865 intron sima + chr3R 30085606 intron sima + chr3R 30086346 intron sima + chr3R_12_30085001 chr3R_30085001 RAL-181 1854 chr3R 30262574 30262608 chr3R 30262671 30262674 9 93 5.0 2.5 3.8 1.9 100 chr3R 30262574 intergenic not near genes chr3R 30262624 intergenic not near genes chr3R 30262674 intergenic not near genes chr3R_9_30260001 chr3R_30260001 RAL-181 1855 chr3R 30268414 30268448 chr3R 30268495 30268503 11 76 2.5 3.0 2.8 2.9 89 chr3R 30268414 intergenic not near genes chr3R 30268458 intergenic not near genes chr3R 30268503 intergenic not near genes chr3R_11_30265001 chr3R_30265001 RAL-181 1856 chr3R 30272525 30272541 chr3R 30272614 30272630 6 88 5.5 5.0 5.2 1.0 105 chr3R 30272525 intergenic not near genes chr3R 30272578 intergenic not near genes chr3R 30272630 intergenic not near genes chr3R_6_30270001 chr3R_30270001 RAL-181 1857 chr3R 30317326 30317356 chr3R 30324918 30324948 roo 9 7588 0.0 4.5 2.2 2.8 7622 chr3R 30317326 intron hdc + chr3R 30321137 intron hdc + chr3R 30324948 intron hdc + chr3R_9_30320001 chr3R_30320001 RAL-181 1858 chr3R 30396220 30396249 chr3R 30404483 30404495 roo 11 8263 2.5 5.5 4.0 2.2 8275 chr3R 30396220 intergenic not near genes chr3R 30400358 intergenic not near genes chr3R 30404495 5` UTR CR45570 + chr3R_11_30400001 chr3R_30400001 RAL-181 1859 chr3R 30445508 30445536 chr3R 30445600 30445627 6 91 5.5 1.5 3.5 1.3 119 chr3R 30445508 intergenic aralar1 -,Osi23 - chr3R 30445568 intergenic aralar1 - chr3R 30445627 intergenic aralar1 - chr3R_6_30445001 chr3R_30445001 RAL-181 1860 chr3R 30456404 30456425 chr3R 30456485 30456506 4 80 0.5 8.0 4.2 0.8 102 chr3R 30456404 intergenic CG2224 - chr3R 30456455 3` UTR CG2224 - chr3R 30456506 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-181 1861 chr3R 30461496 30461522 chr3R 30461613 30461639 14 116 3.5 5.0 4.2 2.7 143 chr3R 30461496 intron CDase + chr3R 30461568 intron CDase + chr3R 30461639 intron CDase + chr3R_14_30460001 chr3R_30460001 RAL-181 1862 chr3R 30480475 30480513 chr3R 30482940 30482975 jockey 15 2466 3.5 7.0 5.2 2.4 2500 chr3R 30480475 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 RAL-181 1863 chr3R 30485041 30485066 chr3R 30485116 30485142 13 75 1.0 3.5 2.2 4.1 101 chr3R 30485041 intron PH4alphaEFB + chr3R 30485092 intron PH4alphaEFB + chr3R 30485142 intron PH4alphaEFB + chr3R_13_30485001 chr3R_30485001 RAL-181 1864 chr3R 30549011 30549037 chr3R 30549101 30549129 14 92 3.0 3.5 3.2 3.3 118 chr3R 30549011 intron tmod + chr3R 30549070 intron tmod + chr3R 30549129 intron tmod + chr3R_14_30545001 chr3R_30545001 RAL-181 1865 chr3R 30591323 30591339 chr3R 30591425 30591441 8 100 0.5 1.0 0.8 4.4 118 chr3R 30591323 intergenic not near genes chr3R 30591382 intergenic not near genes chr3R 30591441 intergenic not near genes chr3R_8_30590001 chr3R_30590001 RAL-181 1866 chr3R 30627602 30627639 chr3R 30627682 30627718 14 78 8.5 7.5 8.0 1.6 116 chr3R 30627602 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_14_30625001 chr3R_30625001 RAL-181 1867 chr3R 30634199 30634234 chr3R 30634290 30634323 8 91 1.5 1.5 1.5 3.2 124 chr3R 30634199 intergenic not near genes chr3R 30634261 intergenic not near genes chr3R 30634323 intergenic not near genes chr3R_8_30630001 chr3R_30630001 RAL-181 1868 chr3R 30818819 30818841 chr3R 30820383 30820406 1360 5 1564 3.5 4.0 3.8 1.0 1587 chr3R 30818819 intron cindr + chr3R 30819612 intron cindr + chr3R 30820406 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-181 1869 chr3R 31074230 31074260 chr3R 31081828 31081858 springer 11 7596 4.0 5.5 4.8 1.9 7628 chr3R 31074230 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081858 intron Sox100B + chr3R_11_31075001 chr3R_31075001 RAL-181 1870 chr3R 31121777 31121810 chr3R 31121869 31121902 20 90 7.5 5.5 6.5 2.7 125 chr3R 31121777 intergenic not near genes chr3R 31121840 intergenic not near genes chr3R 31121902 intergenic not near genes chr3R_20_31120001 chr3R_31120001 RAL-181 1871 chr3R 31137171 31137184 chr3R 31137235 31137263 9 73 3.0 5.0 4.0 1.8 92 chr3R 31137171 intron Gycbeta100B + chr3R 31137217 intron Gycbeta100B + chr3R 31137263 intron Gycbeta100B + chr3R_9_31135001 chr3R_31135001 RAL-181 1872 chr3R 31159567 31159589 chr3R 31159716 31159734 10 147 5.0 4.5 4.8 1.7 167 chr3R 31159567 intron,intron Gycbeta100B +,stops - chr3R 31159650 intron,intron Gycbeta100B +,stops - chr3R 31159734 intron,intron Gycbeta100B +,stops - chr3R_10_31155001 chr3R_31155001 RAL-181 1873 chr3R 31245771 31245803 chr3R 31245858 31245868 6 79 6.5 5.0 5.8 0.9 97 chr3R 31245771 intron qless - chr3R 31245820 intron qless - chr3R 31245868 intron qless - chr3R_6_31245001 chr3R_31245001 RAL-181 1874 chr3R 31279374 31279398 chr3R 31285565 31285585 diver 10 6187 8.0 3.0 5.5 1.5 6211 chr3R 31279374 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285585 intergenic not near genes chr3R_10_31280001 chr3R_31280001 RAL-181 1875 chr3R 31288798 31288825 chr3R 31289240 31289269 10 442 4.5 6.5 5.5 1.5 471 chr3R 31288798 intergenic not near genes chr3R 31289034 intergenic not near genes chr3R 31289269 intergenic not near genes chr3R_10_31285001 chr3R_31285001 RAL-181 1876 chr3R 31391012 31391022 chr3R 31391093 31391097 5 82 3.5 3.5 3.5 1.1 85 chr3R 31391012 3` UTR CG1607 + chr3R 31391054 3` UTR CG1607 + chr3R 31391097 3` UTR CG1607 + chr3R_5_31390001 chr3R_31390001 RAL-181 1877 chr3R 31408058 31408095 chr3R 31408372 31408409 19 313 3.5 5.5 4.5 3.5 351 chr3R 31408058 intron Gprk2 + chr3R 31408234 intron Gprk2 + chr3R 31408409 intron Gprk2 + chr3R_19_31405001 chr3R_31405001 RAL-181 1878 chr3R 31413090 31413121 chr3R 31418290 31418305 copia 10 5196 6.0 3.0 4.5 1.8 5215 chr3R 31413090 intron Gprk2 + chr3R 31415698 intron Gprk2 + chr3R 31418305 intron Gprk2 + chr3R_10_31415001 chr3R_31415001 RAL-181 1879 chr3R 31426880 31426892 chr3R 31426971 31426984 7 91 8.0 0.0 4.0 1.4 104 chr3R 31426880 intron Gprk2 + chr3R 31426932 intron Gprk2 + chr3R 31426984 intron Gprk2 + chr3R_7_31425001 chr3R_31425001 RAL-181 1880 chr3R 31426894 31426914 chr3R 31426968 31427006 10 90 3.5 0.0 1.8 3.6 112 chr3R 31426894 intron Gprk2 + chr3R 31426950 intron Gprk2 + chr3R 31427006 intron Gprk2 + chr3R_10_31425001 chr3R_31425001 RAL-181 1881 chr3R 31435376 31435389 chr3R 31435517 31435524 8 146 5.5 3.5 4.5 1.5 148 chr3R 31435376 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435524 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-181 1882 chr3R 31453220 31453249 chr3R 31453298 31453327 19 78 4.5 13.5 9.0 1.9 107 chr3R 31453220 intron Gprk2 + chr3R 31453274 intron Gprk2 + chr3R 31453327 exon Gprk2 + chr3R_19_31450001 chr3R_31450001 RAL-181 1883 chr3R 31539343 31539357 chr3R 31539427 31539442 6 85 3.0 3.5 3.2 1.4 99 chr3R 31539343 intergenic not near genes chr3R 31539392 intergenic not near genes chr3R 31539442 intergenic not near genes chr3R_6_31535001 chr3R_31535001 RAL-181 1884 chr3R 31691531 31691549 chr3R 31696297 31696314 Doc 7 4765 6.0 9.0 7.5 0.8 4783 chr3R 31691531 intergenic not near genes chr3R 31693922 intergenic not near genes chr3R 31696314 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-181 1885 chr3R 31691556 31691561 chr3R 31696296 31696327 Doc 9 4755 4.0 9.0 6.5 1.2 4771 chr3R 31691556 intergenic not near genes chr3R 31693942 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-181 1886 chr3R 31706832 31706845 chr3R 31706917 31706930 4 85 4.0 5.5 4.8 0.7 98 chr3R 31706832 intergenic not near genes chr3R 31706881 intergenic not near genes chr3R 31706930 intergenic not near genes chr3R_4_31705001 chr3R_31705001 RAL-181 1887 chr3R 31716994 31717020 chr3R 31717227 31717245 4 230 0.5 5.5 3.0 1.0 251 chr3R 31716994 intron ttk + chr3R 31717120 intron ttk + chr3R 31717245 intron ttk + chr3R_4_31715001 chr3R_31715001 RAL-181 1888 chr3R 31924599 31924605 chr3R 31924680 31924686 4 81 0.0 12.0 6.0 0.6 87 chr3R 31924599 intron heph - chr3R 31924642 intron heph - chr3R 31924686 intron heph - chr3R_4_31920001 chr3R_31920001 RAL-181 1889 chr3R 31997990 31998020 chr3R 32005460 32005480 blood 15 7467 5.0 4.0 4.5 2.7 7490 chr3R 31997990 intron heph - chr3R 32001735 intron heph - chr3R 32005480 intron heph - chr3R_15_32000001 chr3R_32000001 RAL-181 1890 chr3R 32009991 32010019 chr3R 32010114 32010142 4 121 3.0 7.0 5.0 0.7 151 chr3R 32009991 intron heph - chr3R 32010066 intron heph - chr3R 32010142 intron heph - chr3R_4_32010001 chr3R_32010001 RAL-181 1891 chr4 76501 76518 chr4 81944 81959 I-element 5 5442 7.5 2.0 4.8 0.9 5458 chr4 76501 intron pan + chr4 79230 intron pan + chr4 81959 intron pan + chr4_5_75001 chr4_75001 RAL-181 1892 chr4 671610 671635 chr4 680187 680216 Tirant 14 8581 3.0 6.0 4.5 2.5 8606 chr4 671610 intron CG11360 + chr4 675913 intron CG11360 + chr4 680216 intron CG11360 + chr4_14_675001 chr4_675001 RAL-181 1893 chrX 154372 154401 chrX 154454 154484 15 80 2.5 4.5 3.5 3.3 112 chrX 154372 intron tyn + chrX 154428 intron tyn + chrX 154484 intron tyn + chrX_15_150001 chrX_150001 RAL-181 1894 chrX 295857 295877 chrX 303476 303479 412 6 7615 3.5 4.5 4.0 1.2 7622 chrX 295857 intron CG3777 + chrX 299668 intron CG3777 + chrX 303479 intron CG3777 + chrX_6_295001 chrX_295001 RAL-181 1895 chrX 428426 428451 chrX 434611 434635 3S18 5 6185 8.5 2.5 5.5 0.8 6209 chrX 428426 intron CG32816 - chrX 431530 intron CG32816 - chrX 434635 intron CG32816 - chrX_5_430001 chrX_430001 RAL-181 1896 chrX 450364 450387 chrX 450442 450465 7 76 3.0 4.0 3.5 1.6 101 chrX 450364 intron CG32816 - chrX 450414 intron CG32816 - chrX 450465 intron CG32816 - chrX_7_450001 chrX_450001 RAL-181 1897 chrX 551435 551454 chrX 558988 559011 412 4 7552 6.5 2.0 4.2 0.8 7576 chrX 551435 intron Appl + chrX 555223 intron Appl + chrX 559011 intron Appl + chrX_4_555001 chrX_555001 RAL-181 1898 chrX 559452 559471 chrX 559786 559805 5 334 3.0 5.5 4.2 1.0 353 chrX 559452 intron Appl + chrX 559628 intron Appl + chrX 559805 intron Appl + chrX_5_555001 chrX_555001 RAL-181 1899 chrX 667645 667681 chrX 667729 667765 20 81 4.5 2.0 3.2 4.8 120 chrX 667645 intergenic not near genes chrX 667705 intergenic not near genes chrX 667765 intergenic not near genes chrX_20_665001 chrX_665001 RAL-181 1900 chrX 670264 670296 chrX 670344 670364 16 76 0.0 2.0 1.0 8.0 100 chrX 670264 intergenic not near genes chrX 670314 intergenic not near genes chrX 670364 intergenic not near genes chrX_16_670001 chrX_670001 RAL-181 1901 chrX 680852 680871 chrX 680926 680950 12 77 5.0 7.0 6.0 1.7 98 chrX 680852 intergenic not near genes chrX 680901 intergenic not near genes chrX 680950 intergenic not near genes chrX_12_680001 chrX_680001 RAL-181 1902 chrX 706807 706829 chrX 707170 707193 9 363 0.0 7.5 3.8 1.9 386 chrX 706807 intron sdk + chrX 707000 intron sdk + chrX 707193 intron sdk + chrX_9_705001 chrX_705001 RAL-181 1903 chrX 778127 778160 chrX 778214 778250 21 87 8.5 2.0 5.2 3.4 123 chrX 778127 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_21_775001 chrX_775001 RAL-181 1904 chrX 827606 827634 chrX 835397 835420 roo 5 7789 6.5 0.0 3.2 1.2 7814 chrX 827606 intron CG43867 - chrX 831513 intron CG43867 - chrX 835420 intron CG43867 - chrX_5_830001 chrX_830001 RAL-181 1905 chrX 868495 868516 chrX 868572 868593 12 74 2.5 7.0 4.8 2.1 98 chrX 868495 intron CG43867 - chrX 868544 intron CG43867 - chrX 868593 intron CG43867 - chrX_12_865001 chrX_865001 RAL-181 1906 chrX 882233 882269 chrX 882320 882356 12 84 2.5 6.0 4.2 2.3 123 chrX 882233 intron CG43867 - chrX 882294 intron CG43867 - chrX 882356 intron CG43867 - chrX_12_880001 chrX_880001 RAL-181 1907 chrX 906703 906734 chrX 908492 908519 S-element 19 1787 3.5 8.5 6.0 2.7 1816 chrX 906703 intron CG43867 - chrX 907611 intron CG43867 - chrX 908519 intron CG43867 - chrX_19_905001 chrX_905001 RAL-181 1908 chrX 1051073 1051082 chrX 1051149 1051160 8 77 13.0 8.0 10.5 0.7 87 chrX 1051073 intron CR44779 + chrX 1051116 intron CR44779 + chrX 1051160 intron CR44779 + chrX_8_1050001 chrX_1050001 RAL-181 1909 chrX 1053117 1053120 chrX 16983076 16983076 6 15929958 22.0 20.0 21.0 0.3 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_6_9015001 chrX_9015001 RAL-181 1910 chrX 1336390 1336402 chrX 1337833 1337844 7 1443 34.5 42.0 38.2 0.2 1454 chrX 1336390 intron CG11409 - chrX 1337117 intron CG11409 - chrX 1337844 intron CG11409 - chrX_7_1335001 chrX_1335001 RAL-181 1911 chrX 1336389 1336427 chrX 1337846 1337869 17 1446 36.5 40.0 38.2 0.4 1480 chrX 1336389 intron CG11409 - chrX 1337129 intron CG11409 - chrX 1337869 intron CG11409 - chrX_17_1335001 chrX_1335001 RAL-181 1912 chrX 1357776 1357807 chrX 1367946 1367973 Doc 10 10169 4.5 4.0 4.2 1.9 10197 chrX 1357776 intergenic png - chrX 1362874 intergenic not near genes chrX 1367973 intergenic not near genes chrX_10_1360001 chrX_1360001 RAL-181 1913 chrX 1518039 1518076 chrX 1523441 1523477 jockey 11 5401 2.5 7.0 4.8 1.9 5438 chrX 1518039 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523477 intergenic not near genes chrX_11_1520001 chrX_1520001 RAL-181 1914 chrX 1559934 1559952 chrX 1560003 1560030 5 78 2.0 5.0 3.5 1.1 96 chrX 1559934 intron Mur2B - chrX 1559982 intron Mur2B - chrX 1560030 intron Mur2B - chrX_5_1555001 chrX_1555001 RAL-181 1915 chrX 1627976 1627997 chrX 1635444 1635465 gtwin 6 7467 6.0 1.5 3.8 1.2 7489 chrX 1627976 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-181 1916 chrX 1823602 1823628 chrX 1823792 1823804 14 189 3.5 3.5 3.5 3.1 202 chrX 1823602 intron CG42666 + chrX 1823703 intron CG42666 + chrX 1823804 intron CG42666 + chrX_14_1820001 chrX_1820001 RAL-181 1917 chrX 1954892 1954916 chrX 1962825 1962837 Stalker2 9 7927 3.0 3.0 3.0 2.2 7945 chrX 1954892 intron Hr4 + chrX 1958864 intron Hr4 + chrX 1962837 intron Hr4 + chrX_9_1955001 chrX_1955001 RAL-181 1918 chrX 2397922 2397931 chrX 2398015 2398022 4 93 7.5 0.0 3.8 0.8 100 chrX 2397922 intergenic not near genes chrX 2397972 intergenic not near genes chrX 2398022 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-181 1919 chrX 2399836 2399845 chrX 2408189 2408189 roo 4 8350 10.5 3.0 6.8 0.5 8353 chrX 2399836 intergenic not near genes chrX 2404012 intergenic not near genes chrX 2408189 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-181 1920 chrX 2399847 2399866 chrX 2408188 2408204 roo 4 8344 5.0 3.0 4.0 0.8 8357 chrX 2399847 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408204 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-181 1921 chrX 2578819 2578843 chrX 2578908 2578929 11 90 3.0 3.0 3.0 2.8 110 chrX 2578819 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578929 intergenic Vha36-3 -,Pdfr + chrX_11_2575001 chrX_2575001 RAL-181 1922 chrX 2664384 2664418 chrX 2665529 2665564 1360 10 1143 1.0 2.0 1.5 4.0 1180 chrX 2664384 intron sgg + chrX 2664974 intron sgg + chrX 2665564 intron sgg + chrX_10_2660001 chrX_2660001 RAL-181 1923 chrX 2859575 2859582 chrX 2859649 2859654 4 76 1.5 2.5 2.0 1.3 79 chrX 2859575 intron kirre + chrX 2859614 intron kirre + chrX 2859654 intron kirre + chrX_4_2855001 chrX_2855001 RAL-181 1924 chrX 2932230 2932250 chrX 2932312 2932333 7 82 3.5 3.5 3.5 1.6 103 chrX 2932230 intron,exon kirre +,CG32793 + chrX 2932282 intron,exon kirre +,CG32793 + chrX 2932333 intron,exon kirre +,CG32793 + chrX_7_2930001 chrX_2930001 RAL-181 1925 chrX 3038738 3038770 chrX 3038826 3038858 20 86 2.5 3.5 3.0 5.0 120 chrX 3038738 intron kirre + chrX 3038798 intron kirre + chrX 3038858 intron kirre + chrX_20_3035001 chrX_3035001 RAL-181 1926 chrX 3075635 3075663 chrX 3080941 3080969 Transpac 11 5304 2.5 5.5 4.0 2.2 5334 chrX 3075635 intron kirre + chrX 3078302 intron kirre + chrX 3080969 intron kirre + chrX_11_3075001 chrX_3075001 RAL-181 1927 chrX 3120077 3120097 chrX 3120155 3120156 7 74 1.5 6.0 3.8 1.5 79 chrX 3120077 intron kirre + chrX 3120116 intron kirre + chrX 3120156 intron kirre + chrX_7_3120001 chrX_3120001 RAL-181 1928 chrX 3306349 3306371 chrX 3306431 3306437 6 79 3.5 0.0 1.8 2.1 88 chrX 3306349 intron dnc + chrX 3306393 intron dnc + chrX 3306437 intron dnc + chrX_6_3305001 chrX_3305001 RAL-181 1929 chrX 3322643 3322656 chrX 3322717 3322731 6 75 6.0 3.5 4.8 1.0 88 chrX 3322643 intron,intron dnc +,CR44886 - chrX 3322687 intron,intron dnc +,CR44886 - chrX 3322731 intron,intron dnc +,CR44886 - chrX_6_3320001 chrX_3320001 RAL-181 1930 chrX 3415030 3415051 chrX 3421207 3421215 3S18 6 6180 1.5 1.5 1.5 2.4 6185 chrX 3415030 intron,intron CR44999 +,CG12535 - chrX 3418122 intron,intron CR44999 +,CG12535 - chrX 3421215 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-181 1931 chrX 3459986 3460012 chrX 3460060 3460085 8 74 1.0 2.5 1.8 2.9 99 chrX 3459986 intron,intron CR44999 +,CG16782 - chrX 3460036 intron,5` UTR CR44999 +,CG16782 - chrX 3460085 intron,5` UTR CR44999 +,CG16782 - chrX_8_3460001 chrX_3460001 RAL-181 1932 chrX 3493092 3493120 chrX 3502251 3502255 roo 7 9155 5.0 1.5 3.2 1.7 9163 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497674 intron,intron CR44999 +,Gas8 - chrX 3502255 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-181 1933 chrX 3513772 3513790 chrX 3513841 3513873 8 81 2.0 2.5 2.2 2.5 101 chrX 3513772 intron,intron CR44999 +,CG32791 - chrX 3513822 intron,intron CR44999 +,CG32791 - chrX 3513873 intron,intron CR44999 +,CG32791 - chrX_8_3510001 chrX_3510001 RAL-181 1934 chrX 3535412 3535436 chrX 3535494 3535527 10 87 4.0 4.5 4.2 1.9 115 chrX 3535412 intron CG32791 - chrX 3535470 intron CG32791 - chrX 3535527 intron CG32791 - chrX_10_3535001 chrX_3535001 RAL-181 1935 chrX 3567286 3567298 chrX 3567371 3567380 5 84 0.0 0.5 0.2 4.2 94 chrX 3567286 intron,intron CG32791 -,ppk8 + chrX 3567333 intron,intron CG32791 -,ppk8 + chrX 3567380 intron,intron CG32791 -,ppk8 + chrX_5_3565001 chrX_3565001 RAL-181 1936 chrX 3597550 3597582 chrX 3619718 3619748 roo 15 22166 4.0 5.5 4.8 2.6 22198 chrX 3597550 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_15_3605001 chrX_3605001 RAL-181 1937 chrX 3620464 3620491 chrX 3620563 3620589 8 98 2.0 2.0 2.0 2.7 125 chrX 3620464 intron AstA-R1 + chrX 3620526 intron AstA-R1 + chrX 3620589 intron AstA-R1 + chrX_8_3620001 chrX_3620001 RAL-181 1938 chrX 3630549 3630575 chrX 3630623 3630649 11 74 3.5 7.0 5.2 1.8 100 chrX 3630549 intron AstA-R1 + chrX 3630599 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_11_3630001 chrX_3630001 RAL-181 1939 chrX 3726766 3726794 chrX 3730163 3730191 NOF 6 3396 4.5 2.0 3.2 1.4 3425 chrX 3726766 intron tlk + chrX 3728478 intron tlk + chrX 3730191 intron tlk + chrX_6_3725001 chrX_3725001 RAL-181 1940 chrX 3840248 3840274 chrX 3840329 3840355 6 81 2.0 2.5 2.2 1.9 107 chrX 3840248 intron ec + chrX 3840302 intron ec + chrX 3840355 intron ec + chrX_6_3840001 chrX_3840001 RAL-181 1941 chrX 3842328 3842353 chrX 3842569 3842593 pogo 12 241 3.5 3.5 3.5 2.7 265 chrX 3842328 intron ec + chrX 3842460 intron ec + chrX 3842593 intron ec + chrX_12_3840001 chrX_3840001 RAL-181 1942 chrX 3862818 3862839 chrX 3862901 3862923 8 84 3.0 3.5 3.2 1.9 105 chrX 3862818 intergenic yin - chrX 3862870 intergenic yin - chrX 3862923 intergenic yin - chrX_8_3860001 chrX_3860001 RAL-181 1943 chrX 3866104 3866136 chrX 3866182 3866214 12 76 1.5 3.0 2.2 3.8 110 chrX 3866104 intron yin - chrX 3866159 intron yin - chrX 3866214 intron yin - chrX_12_3865001 chrX_3865001 RAL-181 1944 chrX 3890667 3890686 chrX 3890989 3891006 5 322 6.0 5.5 5.8 0.7 339 chrX 3890667 intergenic CG15239 + chrX 3890836 intergenic CG15239 + chrX 3891006 intergenic CG42541 - chrX_5_3890001 chrX_3890001 RAL-181 1945 chrX 3986861 3986896 chrX 3994494 3994521 412 16 7630 3.0 5.5 4.2 3.1 7660 chrX 3986861 intergenic not near genes chrX 3990691 intergenic not near genes chrX 3994521 intergenic not near genes chrX_16_3990001 chrX_3990001 RAL-181 1946 chrX 4029530 4029551 chrX 4029718 4029736 5 189 2.5 0.0 1.2 2.3 206 chrX 4029530 intergenic not near genes chrX 4029633 intergenic not near genes chrX 4029736 intergenic not near genes chrX_5_4025001 chrX_4025001 RAL-181 1947 chrX 4041576 4041578 chrX 18551191 18551218 4 14509626 8.0 9.5 8.8 0.4 14509642 chrX 4041576 intergenic not near genes chrX 11296397 intron CG44422 - chrX 18551218 intron Bx + chrX_4_11295001 chrX_11295001 RAL-181 1948 chrX 4042483 4042506 chrX 4042683 4042706 5 200 3.0 8.0 5.5 0.8 223 chrX 4042483 intergenic not near genes chrX 4042594 intergenic not near genes chrX 4042706 intergenic not near genes chrX_5_4040001 chrX_4040001 RAL-181 1949 chrX 4101885 4101899 chrX 4101950 4101962 7 73 2.0 3.5 2.8 1.8 77 chrX 4101885 exon CG15375 + chrX 4101924 exon CG15375 + chrX 4101962 exon CG15375 + chrX_7_4100001 chrX_4100001 RAL-181 1950 chrX 4157894 4157915 chrX 4164929 4164935 297 5 7032 4.0 1.5 2.8 1.3 7041 chrX 4157894 intron Fas2 - chrX 4161414 intron Fas2 - chrX 4164935 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-181 1951 chrX 4251354 4251377 chrX 4253694 4253726 17 2346 23.5 24.0 23.8 0.7 2372 chrX 4251354 intergenic not near genes chrX 4252540 exon CG15576 - chrX 4253726 intergenic not near genes chrX_17_4250001 chrX_4250001 RAL-181 1952 chrX 4324396 4324412 chrX 4324473 4324489 4 76 1.5 5.0 3.2 1.0 93 chrX 4324396 intron norpA + chrX 4324442 intron norpA + chrX 4324489 intron norpA + chrX_4_4320001 chrX_4320001 RAL-181 1953 chrX 4436460 4436470 chrX 4436536 4436541 5 74 10.5 2.5 6.5 0.7 81 chrX 4436460 intron,intron CR32773 -,bi + chrX 4436500 intron,intron CR32773 -,bi + chrX 4436541 intron,intron CR32773 -,bi + chrX_5_4435001 chrX_4435001 RAL-181 1954 chrX 4731814 4731830 chrX 4736907 4736917 jockey 9 5091 12.5 7.5 10.0 0.8 5103 chrX 4731814 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736917 intergenic not near genes chrX_9_4730001 chrX_4730001 RAL-181 1955 chrX 4763259 4763285 chrX 4763740 4763773 Stalker4 12 487 5.0 5.5 5.2 1.9 514 chrX 4763259 intergenic not near genes chrX 4763516 intergenic not near genes chrX 4763773 intergenic not near genes chrX_12_4760001 chrX_4760001 RAL-181 1956 chrX 4792381 4792409 chrX 4792813 4792842 jockey 8 432 5.5 7.5 6.5 1.1 461 chrX 4792381 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792842 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-181 1957 chrX 4827972 4827989 chrX 4835343 4835358 Stalker4 5 7369 6.5 5.5 6.0 0.7 7386 chrX 4827972 intergenic not near genes chrX 4831665 intergenic not near genes chrX 4835358 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-181 1958 chrX 4827990 4827997 chrX 4835338 4835356 Stalker4 8 7354 4.5 2.5 3.5 1.8 7366 chrX 4827990 intergenic not near genes chrX 4831673 intergenic not near genes chrX 4835356 intergenic not near genes chrX_8_4830001 chrX_4830001 RAL-181 1959 chrX 4844524 4844534 chrX 4844631 4844644 5 109 0.0 0.5 0.2 4.2 120 chrX 4844524 intron CG42594 + chrX 4844584 intron CG42594 + chrX 4844644 intron CG42594 + chrX_5_4840001 chrX_4840001 RAL-181 1960 chrX 4885775 4885782 chrX 4885868 4885875 4 93 6.5 3.0 4.8 0.7 100 chrX 4885775 intron CG42594 + chrX 4885825 intron CG42594 + chrX 4885875 intron CG42594 + chrX_4_4885001 chrX_4885001 RAL-181 1961 chrX 4885797 4885807 chrX 4885866 4885900 6 85 2.0 2.0 2.0 2.0 103 chrX 4885797 intron CG42594 + chrX 4885848 intron CG42594 + chrX 4885900 intron CG42594 + chrX_6_4885001 chrX_4885001 RAL-181 1962 chrX 4990046 4990072 chrX 4997260 4997281 roo 6 7212 2.0 2.5 2.2 1.9 7235 chrX 4990046 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997281 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-181 1963 chrX 5002077 5002095 chrX 5002161 5002179 5 84 0.5 3.0 1.8 1.8 102 chrX 5002077 intron CR44833 - chrX 5002128 intron CR44833 - chrX 5002179 intron CR44833 - chrX_5_5000001 chrX_5000001 RAL-181 1964 chrX 5096274 5096306 chrX 5103839 5103870 springer 8 7565 4.0 4.5 4.2 1.5 7596 chrX 5096274 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_8_5100001 chrX_5100001 RAL-181 1965 chrX 5122841 5122846 chrX 5123070 5123075 4 229 0.0 0.5 0.2 3.3 234 chrX 5122841 intron,intron CG15465 +,rg + chrX 5122958 intron,intron CG15465 +,rg + chrX 5123075 intron,intron CG15465 +,rg + chrX_4_5120001 chrX_5120001 RAL-181 1966 chrX 5220404 5220413 chrX 5220635 5220654 4 238 0.5 6.0 3.2 1.0 250 chrX 5220404 intron,intron CG15465 +,rg + chrX 5220529 intron,intron CG15465 +,rg + chrX 5220654 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-181 1967 chrX 5272821 5272832 chrX 5272906 5272918 4 86 8.0 2.5 5.2 0.6 97 chrX 5272821 intergenic not near genes chrX 5272870 intergenic not near genes chrX 5272918 intergenic not near genes chrX_4_5270001 chrX_5270001 RAL-181 1968 chrX 5272835 5272851 chrX 5272904 5272938 7 82 4.0 2.5 3.2 1.7 103 chrX 5272835 intergenic not near genes chrX 5272886 intergenic not near genes chrX 5272938 intergenic not near genes chrX_7_5270001 chrX_5270001 RAL-181 1969 chrX 5338707 5338736 chrX 5339960 5339989 jockey 6 1253 3.5 4.5 4.0 1.2 1282 chrX 5338707 intergenic not near genes chrX 5339348 intergenic not near genes chrX 5339989 intergenic SK + chrX_6_5335001 chrX_5335001 RAL-181 1970 chrX 5345444 5345468 chrX 5345556 5345580 6 112 4.5 4.5 4.5 1.1 136 chrX 5345444 intron SK + chrX 5345512 intron SK + chrX 5345580 intron SK + chrX_6_5345001 chrX_5345001 RAL-181 1971 chrX 5367413 5367446 chrX 5367490 5367523 7 76 8.5 5.0 6.8 0.9 110 chrX 5367413 intron SK + chrX 5367468 intron SK + chrX 5367523 intron SK + chrX_7_5365001 chrX_5365001 RAL-181 1972 chrX 5725031 5725059 chrX 5725133 5725162 12 101 2.5 2.0 2.2 3.8 131 chrX 5725031 intron CG32758 - chrX 5725096 intron CG32758 - chrX 5725162 intron CG32758 - chrX_12_5725001 chrX_5725001 RAL-181 1973 chrX 5726263 5726280 chrX 5726605 5726619 4 340 0.0 3.5 1.8 1.4 356 chrX 5726263 intron CG32758 - chrX 5726441 intron CG32758 - chrX 5726619 intron CG32758 - chrX_4_5725001 chrX_5725001 RAL-181 1974 chrX 5798861 5798888 chrX 5799023 5799050 15 161 0.5 4.5 2.5 4.3 189 chrX 5798861 intergenic not near genes chrX 5798956 intergenic not near genes chrX 5799050 intergenic not near genes chrX_15_5795001 chrX_5795001 RAL-181 1975 chrX 5883813 5883837 chrX 5884050 5884078 pogo 10 238 4.0 2.5 3.2 2.4 265 chrX 5883813 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884078 intron CR45668 - chrX_10_5880001 chrX_5880001 RAL-181 1976 chrX 5884160 5884187 chrX 5884401 5884428 pogo 8 241 7.0 0.5 3.8 1.7 268 chrX 5884160 intron CR45668 - chrX 5884294 intron CR45668 - chrX 5884428 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-181 1977 chrX 6003279 6003310 chrX 6003360 6003389 9 78 0.0 3.5 1.8 3.2 110 chrX 6003279 intron CR44498 + chrX 6003334 intron CR44498 + chrX 6003389 intron CR44498 + chrX_9_6000001 chrX_6000001 RAL-181 1978 chrX 6171594 6171617 chrX 6179019 6179037 Quasimodo 7 7430 4.0 2.0 3.0 1.8 7443 chrX 6171594 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179037 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-181 1979 chrX 6335222 6335237 chrX 6337732 6337747 Tirant 9 2510 0.0 5.5 2.8 2.4 2525 chrX 6335222 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337747 intergenic CG3842 + chrX_9_6335001 chrX_6335001 RAL-181 1980 chrX 6392869 6392904 chrX 6397634 6397669 Doc 9 4765 4.0 8.0 6.0 1.3 4800 chrX 6392869 intergenic not near genes chrX 6395269 intergenic not near genes chrX 6397669 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-181 1981 chrX 6562818 6562851 chrX 6571300 6571332 Tirant 11 8479 3.0 4.0 3.5 2.4 8514 chrX 6562818 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571332 intron CG34417 + chrX_11_6565001 chrX_6565001 RAL-181 1982 chrX 6731637 6731657 chrX 6732066 6732084 6 428 5.5 1.0 3.2 1.4 447 chrX 6731637 intron CG3168 - chrX 6731860 intron CG3168 - chrX 6732084 intron CG3168 - chrX_6_6730001 chrX_6730001 RAL-181 1983 chrX 6897688 6897706 chrX 6897798 6897816 8 110 2.0 4.5 3.2 1.9 128 chrX 6897688 intergenic not near genes chrX 6897752 intergenic not near genes chrX 6897816 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-181 1984 chrX 6989503 6989527 chrX 6989590 6989613 8 86 2.0 2.0 2.0 2.7 110 chrX 6989503 intron ogre - chrX 6989558 intron ogre - chrX 6989613 intron ogre - chrX_8_6985001 chrX_6985001 RAL-181 1985 chrX 7023602 7023633 chrX 7030992 7031022 Tabor 15 7387 6.5 4.5 5.5 2.3 7420 chrX 7023602 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031022 intron CG12541 - chrX_15_7025001 chrX_7025001 RAL-181 1986 chrX 7125244 7125279 chrX 7134403 7134438 roo 11 9159 2.0 1.5 1.8 3.9 9194 chrX 7125244 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134438 intergenic not near genes chrX_11_7125001 chrX_7125001 RAL-181 1987 chrX 7351515 7351540 chrX 7351589 7351618 11 75 7.0 3.0 5.0 1.8 103 chrX 7351515 intron,intron CR44357 -,CG1677 - chrX 7351566 intron,intron CR44357 -,CG1677 - chrX 7351618 intron,intron CR44357 -,CG1677 - chrX_11_7350001 chrX_7350001 RAL-181 1988 chrX 7480453 7480483 chrX 7480545 7480576 13 90 1.0 2.5 1.8 4.6 123 chrX 7480453 intergenic not near genes chrX 7480514 intergenic not near genes chrX 7480576 intergenic not near genes chrX_13_7480001 chrX_7480001 RAL-181 1989 chrX 7560158 7560185 chrX 7560243 7560269 9 82 3.5 0.0 1.8 3.2 111 chrX 7560158 intergenic not near genes chrX 7560214 intergenic not near genes chrX 7560269 intergenic not near genes chrX_9_7560001 chrX_7560001 RAL-181 1990 chrX 7570645 7570664 chrX 7570777 7570798 10 133 0.0 4.0 2.0 3.3 153 chrX 7570645 intergenic not near genes chrX 7570722 intergenic not near genes chrX 7570798 intergenic not near genes chrX_10_7570001 chrX_7570001 RAL-181 1991 chrX 7680116 7680134 chrX 7680197 7680216 8 82 2.5 21.5 12.0 0.6 100 chrX 7680116 3` UTR CR45666 - chrX 7680166 3` UTR CR45666 - chrX 7680216 3` UTR CR45666 - chrX_8_7680001 chrX_7680001 RAL-181 1992 chrX 7679852 7679881 chrX 7680471 7680499 6 621 28.0 40.0 34.0 0.2 647 chrX 7679852 intergenic CR45666 -,CR45667 - chrX 7680176 3` UTR CR45666 - chrX 7680499 3` UTR CR45666 - chrX_6_7680001 chrX_7680001 RAL-181 1993 chrX 7702910 7702928 chrX 7703341 7703366 jockey 8 436 8.0 4.0 6.0 1.1 456 chrX 7702910 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703366 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-181 1994 chrX 7702930 7702936 chrX 7703340 7703360 jockey 4 422 4.0 4.0 4.0 0.8 430 chrX 7702930 intron CHES-1-like - chrX 7703145 intron CHES-1-like - chrX 7703360 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-181 1995 chrX 7720557 7720574 chrX 7720638 7720651 4 78 3.0 2.5 2.8 1.1 94 chrX 7720557 intergenic not near genes chrX 7720604 intergenic not near genes chrX 7720651 intergenic not near genes chrX_4_7720001 chrX_7720001 RAL-181 1996 chrX 7784238 7784243 chrX 7784535 7784545 jockey 6 301 2.0 5.0 3.5 1.3 307 chrX 7784238 intergenic not near genes chrX 7784392 intergenic not near genes chrX 7784545 intergenic not near genes chrX_6_7780001 chrX_7780001 RAL-181 1997 chrX 7832439 7832458 chrX 7832525 7832547 5 86 1.5 4.5 3.0 1.2 108 chrX 7832439 intron CG1402 + chrX 7832493 intron CG1402 + chrX 7832547 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-181 1998 chrX 7845724 7845736 chrX 7847215 7847227 hopper2 7 1490 7.5 2.0 4.8 1.2 1503 chrX 7845724 intergenic not near genes chrX 7846476 intergenic not near genes chrX 7847227 intergenic not near genes chrX_7_7845001 chrX_7845001 RAL-181 1999 chrX 7845737 7845753 chrX 7847214 7847244 hopper2 5 1487 4.0 2.0 3.0 1.2 1507 chrX 7845737 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847244 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-181 2000 chrX 8085572 8085603 chrX 8085658 8085689 13 85 4.0 2.0 3.0 3.2 117 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085689 intron,5` UTR CG2256 -,CR45535 + chrX_13_8085001 chrX_8085001 RAL-181 2001 chrX 8092287 8092311 chrX 8092372 8092392 6 84 7.5 2.0 4.8 1.0 105 chrX 8092287 intron Ubc-E2H - chrX 8092340 intron Ubc-E2H - chrX 8092392 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-181 2002 chrX 8263775 8263792 chrX 8263861 8263878 6 84 1.5 2.0 1.8 2.1 103 chrX 8263775 intron CG1632 + chrX 8263826 intron CG1632 + chrX 8263878 intron CG1632 + chrX_6_8260001 chrX_8260001 RAL-181 2003 chrX 8334654 8334684 chrX 8334732 8334767 8 80 2.5 1.5 2.0 2.7 113 chrX 8334654 intron nAChRalpha3 - chrX 8334710 intron nAChRalpha3 - chrX 8334767 intron nAChRalpha3 - chrX_8_8330001 chrX_8330001 RAL-181 2004 chrX 8364851 8364878 chrX 8365242 8365273 BS 7 394 0.0 3.0 1.5 2.8 422 chrX 8364851 intron nAChRalpha3 - chrX 8365062 intron nAChRalpha3 - chrX 8365273 intron nAChRalpha3 - chrX_7_8365001 chrX_8365001 RAL-181 2005 chrX 8464458 8464466 chrX 8464582 8464590 4 124 7.5 0.5 4.0 0.8 132 chrX 8464458 intergenic Sptr - chrX 8464524 intergenic Sptr - chrX 8464590 intergenic Sptr - chrX_4_8460001 chrX_8460001 RAL-181 2006 chrX 8585389 8585425 chrX 8585517 8585553 17 128 5.5 3.5 4.5 3.1 164 chrX 8585389 intron CG12065 + chrX 8585471 intron CG12065 + chrX 8585553 intron CG12065 + chrX_17_8585001 chrX_8585001 RAL-181 2007 chrX 8922326 8922362 chrX 8922759 8922796 jockey 12 428 5.0 6.0 5.5 1.8 470 chrX 8922326 intron rdgA + chrX 8922561 intron rdgA + chrX 8922796 intron rdgA + chrX_12_8920001 chrX_8920001 RAL-181 2008 chrX 8948765 8948791 chrX 8956275 8956301 roo 9 7509 2.5 2.5 2.5 2.6 7536 chrX 8948765 intron rdgA + chrX 8952533 intron rdgA + chrX 8956301 intron rdgA + chrX_9_8950001 chrX_8950001 RAL-181 2009 chrX 9337942 9337947 chrX 9338034 9338039 5 92 5.5 7.0 6.2 0.7 97 chrX 9337942 intron CG34449 - chrX 9337990 intron CG34449 - chrX 9338039 intron CG34449 - chrX_5_9335001 chrX_9335001 RAL-181 2010 chrX 9337955 9337972 chrX 9338032 9338064 4 88 2.0 7.0 4.5 0.7 109 chrX 9337955 intron CG34449 - chrX 9338010 intron CG34449 - chrX 9338064 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-181 2011 chrX 9353355 9353361 chrX 9353437 9353443 4 82 0.0 2.0 1.0 2.0 88 chrX 9353355 intron CG34449 - chrX 9353399 intron CG34449 - chrX 9353443 intron CG34449 - chrX_4_9350001 chrX_9350001 RAL-181 2012 chrX 9377849 9377861 chrX 9377918 9377937 6 77 1.5 4.0 2.8 1.6 88 chrX 9377849 intron mgl - chrX 9377893 intron mgl - chrX 9377937 intron mgl - chrX_6_9375001 chrX_9375001 RAL-181 2013 chrX 9508132 9508166 chrX 9509650 9509684 jockey 8 1517 6.0 3.5 4.8 1.4 1552 chrX 9508132 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509684 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-181 2014 chrX 9530386 9530415 chrX 9530486 9530507 8 95 0.0 3.0 1.5 3.2 121 chrX 9530386 intron CG32700 - chrX 9530446 intron CG32700 - chrX 9530507 intron CG32700 - chrX_8_9530001 chrX_9530001 RAL-181 2015 chrX 9543405 9543423 chrX 9543479 9543502 4 78 3.0 1.0 2.0 1.3 97 chrX 9543405 intron CG32700 - chrX 9543454 intron CG32700 - chrX 9543502 intron CG32700 - chrX_4_9540001 chrX_9540001 RAL-181 2016 chrX 9575799 9575823 chrX 9576120 9576145 mdg3 18 321 4.5 8.5 6.5 2.4 346 chrX 9575799 intron,exon CG32699 -,CG42395 - chrX 9575972 intron,intron CG32699 -,CG42395 - chrX 9576145 intron,5` UTR CG32699 -,CG42395 - chrX_18_9575001 chrX_9575001 RAL-181 2017 chrX 9791863 9791895 chrX 9791960 9791992 8 94 3.0 4.5 3.8 1.7 129 chrX 9791863 intron CG32698 + chrX 9791928 intron CG32698 + chrX 9791992 intron CG32698 + chrX_8_9790001 chrX_9790001 RAL-181 2018 chrX 8382094 8382094 chrX 9845361 9845361 5 1463267 27.0 19.5 23.2 0.2 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_5_9110001 chrX_9110001 RAL-181 2019 chrX 9923400 9923423 chrX 9923481 9923514 18 88 3.5 3.5 3.5 4.0 114 chrX 9923400 intergenic not near genes chrX 9923457 intergenic not near genes chrX 9923514 intergenic not near genes chrX_18_9920001 chrX_9920001 RAL-181 2020 chrX 10154289 10154309 chrX 10154361 10154385 4 69 1.0 3.0 2.0 1.3 96 chrX 10154289 intron,intron CR44894 -,CG12645 + chrX 10154337 intron,intron CR44894 -,CG12645 + chrX 10154385 intron,exon CR44894 -,CG12645 + chrX_4_10150001 chrX_10150001 RAL-181 2021 chrX 10338516 10338543 chrX 10338976 10339007 9 463 2.5 4.5 3.5 2.0 491 chrX 10338516 intron CG43740 + chrX 10338762 intron CG43740 + chrX 10339007 intron CG43740 + chrX_9_10335001 chrX_10335001 RAL-181 2022 chrX 10369107 10369125 chrX 10369274 10369283 6 165 5.0 0.5 2.8 1.6 176 chrX 10369107 intron CG17841 + chrX 10369195 intron CG17841 + chrX 10369283 intron CG17841 + chrX_6_10365001 chrX_10365001 RAL-181 2023 chrX 10550855 10550887 chrX 10552322 10552350 hobo 12 1462 3.5 5.5 4.5 2.2 1495 chrX 10550855 intron spri - chrX 10551602 intron spri - chrX 10552350 intron spri - chrX_12_10550001 chrX_10550001 RAL-181 2024 chrX 10686050 10686078 chrX 10691187 10691215 roo 7 5135 5.5 3.5 4.5 1.3 5165 chrX 10686050 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-181 2025 chrX 10772678 10772694 chrX 10772761 10772773 Tirant 6 81 4.0 2.0 3.0 1.5 95 chrX 10772678 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772773 intron CG15211 + chrX_6_10770001 chrX_10770001 RAL-181 2026 chrX 11184256 11184284 chrX 11189332 11189360 flea 5 5075 2.0 2.5 2.2 1.6 5104 chrX 11184256 intergenic not near genes chrX 11186808 intergenic not near genes chrX 11189360 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-181 2027 chrX 11254167 11254194 chrX 11254278 11254301 11 110 6.0 5.5 5.8 1.6 134 chrX 11254167 intron CG44422 - chrX 11254234 intron CG44422 - chrX 11254301 intron CG44422 - chrX_11_11250001 chrX_11250001 RAL-181 2028 chrX 11268571 11268591 chrX 11270053 11270074 hopper2 9 1486 5.0 1.0 3.0 2.2 1503 chrX 11268571 intron CG44422 - chrX 11269322 intron CG44422 - chrX 11270074 intron CG44422 - chrX_9_11265001 chrX_11265001 RAL-181 2029 chrX 11291691 11291723 chrX 11291770 11291793 4 78 0.0 1.5 0.8 2.2 102 chrX 11291691 intron CG44422 - chrX 11291742 intron CG44422 - chrX 11291793 intron CG44422 - chrX_4_11290001 chrX_11290001 RAL-181 2030 chrX 11312068 11312087 chrX 11319417 11319440 Stalker2 8 7349 3.5 4.5 4.0 1.6 7372 chrX 11312068 intergenic not near genes chrX 11315754 intergenic not near genes chrX 11319440 intergenic not near genes chrX_8_11315001 chrX_11315001 RAL-181 2031 chrX 11633430 11633447 chrX 11640484 11640496 297 4 7050 4.0 4.0 4.0 0.8 7066 chrX 11633430 intron Ptp10D + chrX 11636963 intron Ptp10D + chrX 11640496 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-181 2032 chrX 11657905 11657920 chrX 11657997 11658012 5 89 1.0 6.0 3.5 1.1 107 chrX 11657905 intron Ptp10D + chrX 11657958 intron Ptp10D + chrX 11658012 intron Ptp10D + chrX_5_11655001 chrX_11655001 RAL-181 2033 chrX 12094034 12094068 chrX 12094125 12094160 13 88 1.5 4.0 2.8 3.4 126 chrX 12094034 intron,intron CR43960 +,Ten-a + chrX 12094097 intron,intron CR43960 +,Ten-a + chrX 12094160 intron,intron CR43960 +,Ten-a + chrX_13_12090001 chrX_12090001 RAL-181 2034 chrX 12168132 12168158 chrX 12173574 12173600 I-element 5 5440 2.5 3.0 2.8 1.3 5468 chrX 12168132 intron Ten-a + chrX 12170866 intron Ten-a + chrX 12173600 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-181 2035 chrX 12272864 12272869 chrX 12272943 12272948 5 79 2.5 3.0 2.8 1.3 84 chrX 12272864 intron Ten-a + chrX 12272906 intron Ten-a + chrX 12272948 intron Ten-a + chrX_5_12270001 chrX_12270001 RAL-181 2036 chrX 12301759 12301791 chrX 12301835 12301867 13 73 3.0 3.0 3.0 3.2 108 chrX 12301759 intron Ten-a + chrX 12301813 intron Ten-a + chrX 12301867 intron Ten-a + chrX_13_12300001 chrX_12300001 RAL-181 2037 chrX 12301958 12301989 chrX 12303262 12303294 X-element 14 1304 1.0 4.5 2.8 3.7 1336 chrX 12301958 intron Ten-a + chrX 12302626 intron Ten-a + chrX 12303294 intron Ten-a + chrX_14_12300001 chrX_12300001 RAL-181 2038 chrX 12414301 12414322 chrX 12414621 12414628 9 319 3.0 3.5 3.2 2.1 327 chrX 12414301 intergenic not near genes chrX 12414464 intergenic not near genes chrX 12414628 intergenic not near genes chrX_9_12410001 chrX_12410001 RAL-181 2039 chrX 12635633 12635650 chrX 12635712 12635728 8 78 3.0 1.5 2.2 2.5 95 chrX 12635633 intron Tomosyn + chrX 12635680 intron Tomosyn + chrX 12635728 intron Tomosyn + chrX_8_12635001 chrX_12635001 RAL-181 2040 chrX 12814818 12814843 chrX 12818176 12818201 13 3359 16.0 62.5 39.2 0.3 3383 chrX 12814818 intron Pde9 - chrX 12816510 intron Pde9 - chrX 12818201 intron Pde9 - chrX_13_12815001 chrX_12815001 RAL-181 2041 chrX 12825380 12825401 chrX 12825456 12825477 5 76 4.0 1.5 2.8 1.3 97 chrX 12825380 intron Pde9 - chrX 12825428 intron Pde9 - chrX 12825477 intron Pde9 - chrX_5_12825001 chrX_12825001 RAL-181 2042 chrX 12882146 12882167 chrX 12882231 12882245 11 82 4.5 0.5 2.5 3.1 99 chrX 12882146 intron Pde9 - chrX 12882196 intron Pde9 - chrX 12882245 intron Pde9 - chrX_11_12880001 chrX_12880001 RAL-181 2043 chrX 13020891 13020907 chrX 13021154 13021178 13 269 3.5 4.0 3.8 2.7 287 chrX 13020891 intron rad + chrX 13021034 intron rad + chrX 13021178 intron rad + chrX_13_13020001 chrX_13020001 RAL-181 2044 chrX 13109342 13109366 chrX 13109430 13109441 5 82 0.5 0.0 0.2 4.2 99 chrX 13109342 intron CG43313 - chrX 13109392 intron CG43313 - chrX 13109441 intron CG43313 - chrX_5_13105001 chrX_13105001 RAL-181 2045 chrX 13146596 13146631 chrX 13146684 13146719 10 88 1.5 2.5 2.0 3.3 123 chrX 13146596 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146719 intron CG32645 + chrX_10_13145001 chrX_13145001 RAL-181 2046 chrX 13172348 13172382 chrX 13172424 13172458 15 74 4.5 2.5 3.5 3.3 110 chrX 13172348 exon CG34411 - chrX 13172403 intron CG34411 - chrX 13172458 intron CG34411 - chrX_15_13170001 chrX_13170001 RAL-181 2047 chrX 13374835 13374870 chrX 13374915 13374950 7 78 3.0 1.0 2.0 2.3 115 chrX 13374835 intron CG1640 + chrX 13374892 intron CG1640 + chrX 13374950 intron CG1640 + chrX_7_13370001 chrX_13370001 RAL-181 2048 chrX 13390917 13390946 chrX 13391131 13391158 8 210 5.5 3.0 4.2 1.5 241 chrX 13390917 intergenic CR44620 - chrX 13391038 intergenic CR44620 - chrX 13391158 intergenic not near genes chrX_8_13390001 chrX_13390001 RAL-181 2049 chrX 13401503 13401517 chrX 13401845 13401869 jockey 4 350 2.0 1.5 1.8 1.4 366 chrX 13401503 intergenic CG1673 +,CG12725 - chrX 13401686 intergenic CG12725 -,CG1673 + chrX 13401869 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-181 2050 chrX 13403022 13403043 chrX 13403148 13403167 X-element 8 126 2.5 4.0 3.2 1.9 145 chrX 13403022 intergenic CG12725 - chrX 13403094 intergenic CG12725 - chrX 13403167 intergenic CG12725 - chrX_8_13400001 chrX_13400001 RAL-181 2051 chrX 13894392 13894421 chrX 13894469 13894498 5 73 0.0 2.5 1.2 2.3 106 chrX 13894392 intron mamo - chrX 13894445 intron mamo - chrX 13894498 intron mamo - chrX_5_13890001 chrX_13890001 RAL-181 2052 chrX 13934297 13934321 chrX 13934379 13934404 10 81 1.0 3.0 2.0 3.3 107 chrX 13934297 intron mamo - chrX 13934350 intron mamo - chrX 13934404 intron mamo - chrX_10_13930001 chrX_13930001 RAL-181 2053 chrX 13937984 13938002 chrX 13941255 13941273 I-element 9 3270 4.0 3.5 3.8 1.9 3289 chrX 13937984 intron mamo - chrX 13939628 intron mamo - chrX 13941273 intron mamo - chrX_9_13935001 chrX_13935001 RAL-181 2054 chrX 13975875 13975905 chrX 13975952 13975981 4 77 0.0 2.0 1.0 2.0 106 chrX 13975875 intron mamo - chrX 13975928 intron mamo - chrX 13975981 intron mamo - chrX_4_13975001 chrX_13975001 RAL-181 2055 chrX 14105026 14105043 chrX 14114177 14114190 roo 4 9146 4.0 6.5 5.2 0.6 9164 chrX 14105026 intergenic not near genes chrX 14109608 intergenic not near genes chrX 14114190 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-181 2056 chrX 14105046 14105053 chrX 14114174 14114203 roo 5 9141 2.5 5.5 4.0 1.0 9157 chrX 14105046 intergenic not near genes chrX 14109624 intergenic not near genes chrX 14114203 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-181 2057 chrX 14131487 14131518 chrX 14131568 14131596 9 80 1.5 4.5 3.0 2.2 109 chrX 14131487 intergenic not near genes chrX 14131542 intergenic not near genes chrX 14131596 intergenic not near genes chrX_9_14130001 chrX_14130001 RAL-181 2058 chrX 14157595 14157625 chrX 14163249 14163275 297 7 5655 2.5 0.5 1.5 2.8 5680 chrX 14157595 intergenic not near genes chrX 14160435 intergenic not near genes chrX 14163275 intergenic not near genes chrX_7_14160001 chrX_14160001 RAL-181 2059 chrX 14293861 14293876 chrX 14293946 14293961 4 83 1.5 2.0 1.8 1.4 100 chrX 14293861 intron CR44963 + chrX 14293911 5` UTR CR44963 + chrX 14293961 5` UTR CR44963 + chrX_4_14290001 chrX_14290001 RAL-181 2060 chrX 14331767 14331788 chrX 14332099 14332118 7 333 5.0 2.5 3.8 1.5 351 chrX 14331767 intron dpr8 + chrX 14331942 intron dpr8 + chrX 14332118 intron dpr8 + chrX_7_14330001 chrX_14330001 RAL-181 2061 chrX 14416313 14416340 chrX 14421075 14421106 F-element 6 4762 1.5 0.5 1.0 3.0 4793 chrX 14416313 intron dpr8 + chrX 14418710 intron dpr8 + chrX 14421106 intron dpr8 + chrX_6_14415001 chrX_14415001 RAL-181 2062 chrX 14484969 14484986 chrX 14485058 14485075 5 87 0.0 3.5 1.8 1.8 106 chrX 14484969 intergenic not near genes chrX 14485022 intergenic not near genes chrX 14485075 intergenic not near genes chrX_5_14485001 chrX_14485001 RAL-181 2063 chrX 14597735 14597751 chrX 14597811 14597824 6 75 6.5 4.5 5.5 0.9 89 chrX 14597735 intron CG9413 - chrX 14597780 intron CG9413 - chrX 14597824 intron CG9413 - chrX_6_14595001 chrX_14595001 RAL-181 2064 chrX 14636458 14636490 chrX 14641899 14641931 I-element 15 5434 5.0 2.0 3.5 3.3 5473 chrX 14636458 intron NetA - chrX 14639194 intron NetA - chrX 14641931 intron NetA - chrX_15_14635001 chrX_14635001 RAL-181 2065 chrX 14767943 14767977 chrX 14768023 14768057 12 79 4.0 0.5 2.2 3.8 114 chrX 14767943 intergenic not near genes chrX 14768000 intergenic not near genes chrX 14768057 intergenic not near genes chrX_12_14765001 chrX_14765001 RAL-181 2066 chrX 14808339 14808371 chrX 14808417 14808449 9 77 1.5 0.0 0.8 5.0 110 chrX 14808339 intron rut - chrX 14808394 intron rut - chrX 14808449 intron rut - chrX_9_14805001 chrX_14805001 RAL-181 2067 chrX 14818771 14818793 chrX 14823972 14823981 copia 7 5200 5.0 4.5 4.8 1.2 5210 chrX 14818771 intron rut - chrX 14821376 intron rut - chrX 14823981 intron rut - chrX_7_14820001 chrX_14820001 RAL-181 2068 chrX 14861928 14861956 chrX 14862142 14862170 6 214 12.0 16.0 14.0 0.4 242 chrX 14861928 intron Flo2 + chrX 14862049 intron Flo2 + chrX 14862170 intron Flo2 + chrX_6_14860001 chrX_14860001 RAL-181 2069 chrX 14900850 14900868 chrX 14901042 14901060 4 191 6.0 2.0 4.0 0.8 210 chrX 14900850 intron Flo2 + chrX 14900955 intron Flo2 + chrX 14901060 intron Flo2 + chrX_4_14900001 chrX_14900001 RAL-181 2070 chrX 14981708 14981736 chrX 14981785 14981814 5 78 1.0 0.0 0.5 3.3 106 chrX 14981708 intron eag + chrX 14981761 intron eag + chrX 14981814 intron eag + chrX_5_14980001 chrX_14980001 RAL-181 2071 chrX 15059192 15059207 chrX 15059298 15059313 4 106 0.5 3.5 2.0 1.3 121 chrX 15059192 intron hiw - chrX 15059252 intron hiw - chrX 15059313 intron hiw - chrX_4_15055001 chrX_15055001 RAL-181 2072 chrX 15116900 15116937 chrX 15117017 15117051 10 115 0.0 1.0 0.5 6.7 151 chrX 15116900 intergenic Cyp4s3 - chrX 15116976 intergenic Cyp4s3 - chrX 15117051 intergenic not near genes chrX_10_15115001 chrX_15115001 RAL-181 2073 chrX 15123295 15123314 chrX 15123411 15123424 13 117 7.0 4.0 5.5 2.0 129 chrX 15123295 intergenic not near genes chrX 15123360 intergenic not near genes chrX 15123424 intergenic not near genes chrX_13_15120001 chrX_15120001 RAL-181 2074 chrX 15273718 15273739 chrX 15274868 15274871 1360 4 1153 3.0 3.0 3.0 1.0 1153 chrX 15273718 intergenic not near genes chrX 15274294 intergenic not near genes chrX 15274871 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-181 2075 chrX 15413051 15413085 chrX 15417350 15417387 Juan 13 4299 6.5 3.0 4.8 2.2 4336 chrX 15413051 intron Cngl - chrX 15415219 intron Cngl - chrX 15417387 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-181 2076 chrX 15435689 15435705 chrX 15436122 15436138 rover 6 433 0.5 8.5 4.5 1.1 449 chrX 15435689 intron Cngl - chrX 15435914 intron Cngl - chrX 15436138 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-181 2077 chrX 15536705 15536708 chrX 15536775 15536785 4 75 10.0 16.5 13.2 0.3 80 chrX 15536705 intron Ac13E - chrX 15536745 intron Ac13E - chrX 15536785 intron Ac13E - chrX_4_15535001 chrX_15535001 RAL-181 2078 chrX 15678046 15678068 chrX 15678123 15678145 10 75 2.0 8.0 5.0 1.7 99 chrX 15678046 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_10_15675001 chrX_15675001 RAL-181 2079 chrX 15681395 15681425 chrX 15681477 15681486 11 77 3.5 1.5 2.5 3.1 91 chrX 15681395 intergenic not near genes chrX 15681440 intergenic not near genes chrX 15681486 intergenic not near genes chrX_11_15680001 chrX_15680001 RAL-181 2080 chrX 15898443 15898456 chrX 15898597 15898604 5 153 2.5 2.5 2.5 1.4 161 chrX 15898443 intron shi + chrX 15898524 intron shi + chrX 15898604 intron shi + chrX_5_15895001 chrX_15895001 RAL-181 2081 chrX 16176199 16176219 chrX 16176265 16176296 12 74 4.5 1.5 3.0 3.0 97 chrX 16176199 intergenic not near genes chrX 16176248 intergenic not near genes chrX 16176296 intergenic not near genes chrX_12_16175001 chrX_16175001 RAL-181 2082 chrX 16307403 16307439 chrX 16310748 16310784 22 3349 45.0 43.0 44.0 0.5 3381 chrX 16307403 exon,5` UTR CG9914 -,CR45485 + chrX 16309094 intergenic CR45485 +,CG9914 - chrX 16310784 exon CG9915 - chrX_22_16305001 chrX_16305001 RAL-181 2083 chrX 16329434 16329442 chrX 16329506 16329521 6 79 0.0 5.0 2.5 1.7 87 chrX 16329434 intron CG9919 - chrX 16329478 intron CG9919 - chrX 16329521 exon CG9919 - chrX_6_16325001 chrX_16325001 RAL-181 2084 chrX 16355280 16355295 chrX 16355442 16355455 4 162 1.0 0.0 0.5 2.7 175 chrX 16355280 3` UTR sl + chrX 16355368 3` UTR sl + chrX 16355455 3` UTR sl + chrX_4_16355001 chrX_16355001 RAL-181 2085 chrX 16492644 16492673 chrX 16498221 16498250 mdg3 9 5577 4.0 4.0 4.0 1.8 5606 chrX 16492644 intron para - chrX 16495447 intron para - chrX 16498250 intron para - chrX_9_16495001 chrX_16495001 RAL-181 2086 chrX 16529429 16529440 chrX 16529529 16529551 5 109 0.0 3.5 1.8 1.8 122 chrX 16529429 intron para - chrX 16529490 intron para - chrX 16529551 intron para - chrX_5_16525001 chrX_16525001 RAL-181 2087 chrX 16623486 16623514 chrX 16623567 16623581 4 80 0.0 0.5 0.2 3.3 95 chrX 16623486 intergenic not near genes chrX 16623534 intergenic Rok - chrX 16623581 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-181 2088 chrX 16681639 16681663 chrX 16681713 16681738 6 76 0.5 2.0 1.2 2.7 99 chrX 16681639 3` UTR,intron sing +,Axs - chrX 16681688 3` UTR,intron sing +,Axs - chrX 16681738 3` UTR,intron sing +,Axs - chrX_6_16680001 chrX_16680001 RAL-181 2089 chrX 16702688 16702701 chrX 16705474 16705486 4 2786 10.5 7.5 9.0 0.4 2798 chrX 16702688 intron CG4678 + chrX 16704087 intron,5` UTR CG4678 +,CG4653 + chrX 16705486 intron CG4678 + chrX_4_16700001 chrX_16700001 RAL-181 2090 chrX 16936007 16936026 chrX 16936423 16936444 jockey 5 417 0.0 2.5 1.2 2.3 437 chrX 16936007 intron CG4928 + chrX 16936226 intron CG4928 + chrX 16936444 intron CG4928 + chrX_5_16935001 chrX_16935001 RAL-181 2091 chrX 16965537 16965557 chrX 16965632 16965641 11 93 5.0 5.0 5.0 1.8 104 chrX 16965537 intron CG9086 - chrX 16965589 intron CG9086 - chrX 16965641 intron CG9086 - chrX_11_16965001 chrX_16965001 RAL-181 2092 chrX 16983077 16983077 chrX 19404963 19404965 4 2421886 17.0 27.5 22.2 0.2 2421888 chrX 16983077 intron CG45002 - chrX 18194021 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-181 2093 chrX 17011969 17011998 chrX 17012047 17012078 11 79 2.0 2.5 2.2 3.4 109 chrX 17011969 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012078 intron CG45002 - chrX_11_17010001 chrX_17010001 RAL-181 2094 chrX 17061568 17061603 chrX 17061691 17061726 18 121 1.5 3.0 2.2 5.6 158 chrX 17061568 intron CG45002 - chrX 17061647 intron CG45002 - chrX 17061726 intron CG45002 - chrX_18_17060001 chrX_17060001 RAL-181 2095 chrX 17352596 17352621 chrX 17352695 17352700 6 98 1.0 1.0 1.0 3.0 104 chrX 17352596 intergenic not near genes chrX 17352648 intergenic not near genes chrX 17352700 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-181 2096 chrX 17502353 17502368 chrX 17502433 17502448 5 79 1.0 2.5 1.8 1.8 95 chrX 17502353 intron CG43658 - chrX 17502400 intron CG43658 - chrX 17502448 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-181 2097 chrX 17556952 17556970 chrX 17557445 17557457 mdg1 8 492 4.0 4.0 4.0 1.6 505 chrX 17556952 intron CG43658 - chrX 17557204 intron CG43658 - chrX 17557457 intron CG43658 - chrX_8_17555001 chrX_17555001 RAL-181 2098 chrX 17911858 17911883 chrX 17911946 17911955 8 85 1.5 4.0 2.8 2.1 97 chrX 17911858 intron CG6847 + chrX 17911906 intron CG6847 + chrX 17911955 intron CG6847 + chrX_8_17910001 chrX_17910001 RAL-181 2099 chrX 18218037 18218059 chrX 18218153 18218176 4 115 2.5 1.5 2.0 1.3 139 chrX 18218037 intron CG33639 - chrX 18218106 intron CG33639 - chrX 18218176 intron CG33639 - chrX_4_18215001 chrX_18215001 RAL-181 2100 chrX 18365530 18365558 chrX 18365624 18365652 11 93 3.0 3.0 3.0 2.8 122 chrX 18365530 intergenic not near genes chrX 18365591 intergenic not near genes chrX 18365652 intergenic not near genes chrX_11_18365001 chrX_18365001 RAL-181 2101 chrX 6311381 6311382 chrX 18406121 18406136 6 12094744 18.0 15.5 16.8 0.3 12094755 chrX 6311381 intron CG15894 + chrX 12358758 intergenic not near genes chrX 18406136 intron CG32549 - chrX_6_12355001 chrX_12355001 RAL-181 2102 chrX 18427380 18427408 chrX 18427791 18427813 13 409 2.5 5.5 4.0 2.6 433 chrX 18427380 intergenic CG42323 + chrX 18427596 intergenic not near genes chrX 18427813 intergenic not near genes chrX_13_18425001 chrX_18425001 RAL-181 2103 chrX 18645012 18645049 chrX 18645110 18645147 7 94 2.0 2.0 2.0 2.3 135 chrX 18645012 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645147 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-181 2104 chrX 18698854 18698878 chrX 18698971 18698995 4 117 1.5 4.0 2.8 1.1 141 chrX 18698854 intergenic not near genes chrX 18698924 intergenic not near genes chrX 18698995 intergenic not near genes chrX_4_18695001 chrX_18695001 RAL-181 2105 chrX 18896531 18896546 chrX 18896642 18896651 4 110 1.5 5.5 3.5 0.9 120 chrX 18896531 3` UTR CG7349 + chrX 18896591 intergenic CG7349 + chrX 18896651 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-181 2106 chrX 19084099 19084121 chrX 19084218 19084228 9 117 0.5 1.0 0.8 5.0 129 chrX 19084099 intergenic CR45503 + chrX 19084164 intergenic CR45503 + chrX 19084228 intergenic CR45503 + chrX_9_19080001 chrX_19080001 RAL-181 2107 chrX 19099654 19099687 chrX 19099737 19099770 6 83 4.5 3.5 4.0 1.2 116 chrX 19099654 intergenic not near genes chrX 19099712 intergenic not near genes chrX 19099770 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-181 2108 chrX 19125699 19125721 chrX 19125821 19125850 9 126 2.0 4.5 3.2 2.1 151 chrX 19125699 intron tgy - chrX 19125774 intron tgy - chrX 19125850 intron tgy - chrX_9_19125001 chrX_19125001 RAL-181 2109 chrX 19182016 19182041 chrX 19182127 19182153 5 111 0.5 0.0 0.2 4.2 137 chrX 19182016 3` UTR CG7453 + chrX 19182084 intergenic CG7453 + chrX 19182153 intergenic CG7453 + chrX_5_19180001 chrX_19180001 RAL-181 2110 chrX 13057297 13057300 chrX 19242812 19242814 17 6185514 4.0 4.5 4.2 3.3 6185517 chrX 13057297 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_17_16150001 chrX_16150001 RAL-181 2111 chrX 19357008 19357018 chrX 19358435 19358458 NOF 4 1435 2.0 0.5 1.2 1.8 1450 chrX 19357008 intron kek5 + chrX 19357733 intron kek5 + chrX 19358458 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-181 2112 chrX 19380155 19380179 chrX 19380396 19380419 pogo 12 239 6.0 2.0 4.0 2.4 264 chrX 19380155 intron kek5 + chrX 19380287 intron kek5 + chrX 19380419 intron kek5 + chrX_12_19380001 chrX_19380001 RAL-181 2113 chrX 19472121 19472149 chrX 19472690 19472718 jockey 11 568 5.0 9.0 7.0 1.4 597 chrX 19472121 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472718 intergenic not near genes chrX_11_19470001 chrX_19470001 RAL-181 2114 chrX 19500563 19500751 chrX 19500637 19500838 19 80 0.0 2.0 1.0 9.5 275 chrX 19500563 intron,intron CG14200 +,Pfrx + chrX 19500700 intron,intron CG14200 +,Pfrx + chrX 19500838 intron,intron CG14200 +,Pfrx + chrX_19_19500001 chrX_19500001 RAL-181 2115 chrX 19576564 19576592 chrX 19576636 19576669 13 74 1.5 3.5 2.5 3.7 105 chrX 19576564 intron Tao - chrX 19576616 intron Tao - chrX 19576669 intron Tao - chrX_13_19575001 chrX_19575001 RAL-181 2116 chrX 19586377 19586406 chrX 19586460 19586488 25 80 16.5 7.5 12.0 1.9 111 chrX 19586377 exon CG14204 + chrX 19586432 exon CG14204 + chrX 19586488 exon CG14204 + chrX_25_19585001 chrX_19585001 RAL-181 2117 chrX 19582692 19582717 chrX 19589338 19589361 12 6647 33.0 21.5 27.2 0.4 6669 chrX 19582692 intergenic not near genes chrX 19586026 exon CG14204 + chrX 19589361 exon CG14219 - chrX_12_19585001 chrX_19585001 RAL-181 2118 chrX 19593954 19593971 chrX 19594039 19594051 9 84 3.5 10.0 6.8 1.2 97 chrX 19593954 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594051 intron CG14205 + chrX_9_19590001 chrX_19590001 RAL-181 2119 chrX 19662033 19662051 chrX 19662256 19662274 7 223 4.0 2.5 3.2 1.7 241 chrX 19662033 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662274 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-181 2120 chrX 19700160 19700181 chrX 19700426 19700446 6 262 4.5 2.5 3.5 1.3 286 chrX 19700160 3` UTR CG14231 - chrX 19700303 3` UTR CG14231 - chrX 19700446 exon CG14231 - chrX_6_19700001 chrX_19700001 RAL-181 2121 chrX 19710074 19710101 chrX 19711858 19711880 S-element 14 1782 3.0 4.0 3.5 3.1 1806 chrX 19710074 intron meso18E - chrX 19710977 intron meso18E - chrX 19711880 intron meso18E - chrX_14_19710001 chrX_19710001 RAL-181 2122 chrX 19744649 19744654 chrX 19744752 19744778 4 112 25.5 20.0 22.8 0.2 129 chrX 19744649 5` UTR,exon CG33932 +,Rpp20 + chrX 19744714 intron,intron CG33932 +,Rpp20 + chrX 19744778 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-181 2123 chrX 19769525 19769530 chrX 19769601 19769606 7 76 4.5 18.5 11.5 0.6 81 chrX 19769525 intron vfl - chrX 19769566 intron vfl - chrX 19769606 intron vfl - chrX_7_19765001 chrX_19765001 RAL-181 2124 chrX 19838508 19838525 chrX 19838585 19838601 4 73 7.0 4.5 5.8 0.6 93 chrX 19838508 intron pico - chrX 19838554 intron pico - chrX 19838601 intron pico - chrX_4_19835001 chrX_19835001 RAL-181 2125 chrX 19983862 19983894 chrX 19983942 19983950 9 77 0.5 1.5 1.0 4.5 88 chrX 19983862 intergenic not near genes chrX 19983906 intergenic not near genes chrX 19983950 intergenic not near genes chrX_9_19980001 chrX_19980001 RAL-181 2126 chrX 19992430 19992437 chrX 19992506 19992507 5 74 7.0 13.0 10.0 0.5 77 chrX 19992430 intergenic not near genes chrX 19992468 intergenic not near genes chrX 19992507 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-181 2127 chrX 20007988 20008001 chrX 20008085 20008095 5 96 3.5 0.5 2.0 1.7 107 chrX 20007988 intron Dop2R - chrX 20008042 intron Dop2R - chrX 20008095 intron Dop2R - chrX_5_20005001 chrX_20005001 RAL-181 2128 chrX 20041539 20041567 chrX 20041618 20041647 5 78 1.5 2.0 1.8 1.8 108 chrX 20041539 intron Dop2R - chrX 20041593 intron Dop2R - chrX 20041647 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-181 2129 chrX 20105197 20105225 chrX 20105301 20105331 11 108 49.0 47.5 48.2 0.2 134 chrX 20105197 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105331 intergenic not near genes chrX_11_20105001 chrX_20105001 RAL-181 2130 chrX 20259371 20259385 chrX 20446512 20446535 5 187144 28.0 5.5 16.8 0.3 187164 chrX 20259371 exon CG42577 + chrX 20352953 intergenic not near genes chrX 20446535 exon CG42578 + chrX_5_20350001 chrX_20350001 RAL-181 2131 chrX 20271503 20271525 chrX 20271595 20271617 5 92 2.0 0.0 1.0 2.5 114 chrX 20271503 intergenic not near genes chrX 20271560 intergenic not near genes chrX 20271617 intergenic not near genes chrX_5_20270001 chrX_20270001 RAL-181 2132 chrX 20272839 20272867 chrX 20272939 20272967 5 99 1.5 1.5 1.5 2.0 128 chrX 20272839 intergenic not near genes chrX 20272903 intergenic not near genes chrX 20272967 intergenic not near genes chrX_5_20270001 chrX_20270001 RAL-181 2133 chrX 20312887 20312911 chrX 20312965 20312989 10 78 3.5 3.0 3.2 2.4 102 chrX 20312887 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312989 intron CG1504 - chrX_10_20310001 chrX_20310001 RAL-181 2134 chrX 20377325 20377333 chrX 20378792 20378798 hobo 6 1467 9.5 6.0 7.8 0.7 1473 chrX 20377325 intergenic not near genes chrX 20378062 intergenic not near genes chrX 20378798 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-181 2135 chrX 20377336 20377342 chrX 20378789 20378809 hobo 5 1464 8.0 6.0 7.0 0.6 1473 chrX 20377336 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378809 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-181 2136 chrX 20377343 20377350 chrX 20378782 20378808 hobo 4 1454 6.5 3.5 5.0 0.7 1465 chrX 20377343 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378808 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-181 2137 chrX 20384967 20384983 chrX 20385450 20385465 7 482 0.0 4.5 2.2 2.2 498 chrX 20384967 intergenic not near genes chrX 20385216 intergenic not near genes chrX 20385465 intergenic not near genes chrX_7_20385001 chrX_20385001 RAL-181 2138 chrX 20426180 20426203 chrX 20428375 20428399 7 2199 52.5 49.0 50.8 0.1 2219 chrX 20426180 exon cactin + chrX 20427290 intergenic CG11710 -,CG15456 - chrX 20428399 exon CG11710 - chrX_7_20425001 chrX_20425001 RAL-181 2139 chrX 20443173 20443194 chrX 20443249 20443262 5 73 5.5 3.0 4.2 1.0 89 chrX 20443173 exon CG1695 + chrX 20443218 intron CG1695 + chrX 20443262 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-181 2140 chrX 20456663 20456684 chrX 20456764 20456786 6 100 1.0 3.0 2.0 2.0 123 chrX 20456663 intron CG32506 + chrX 20456724 intron CG32506 + chrX 20456786 intron CG32506 + chrX_6_20455001 chrX_20455001 RAL-181 2141 chrX 20499155 20499189 chrX 20499237 20499272 9 79 5.5 7.0 6.2 1.2 117 chrX 20499155 intron RhoGAP19D - chrX 20499214 intron RhoGAP19D - chrX 20499272 intron RhoGAP19D - chrX_9_20495001 chrX_20495001 RAL-181 2142 chrX 20504127 20504158 chrX 20505646 20505678 transib2 13 1518 3.0 3.0 3.0 3.2 1551 chrX 20504127 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505678 intron RhoGAP19D - chrX_13_20500001 chrX_20500001 RAL-181 2143 chrX 20528601 20528632 chrX 20528949 20528980 11 346 2.5 2.5 2.5 3.1 379 chrX 20528601 intergenic not near genes chrX 20528790 intergenic not near genes chrX 20528980 intergenic not near genes chrX_11_20525001 chrX_20525001 RAL-181 2144 chrX 20726141 20726173 chrX 20726235 20726261 5 91 2.5 3.0 2.8 1.3 120 chrX 20726141 intergenic not near genes chrX 20726201 intergenic not near genes chrX 20726261 intergenic not near genes chrX_5_20725001 chrX_20725001 RAL-181 2145 chrX 20836724 20836759 chrX 20844326 20844361 roo 5 7601 1.0 3.5 2.2 1.6 7637 chrX 20836724 intron shakB - chrX 20840542 intron shakB - chrX 20844361 intron shakB - chrX_5_20840001 chrX_20840001 RAL-181 2146 chrX 20940719 20940755 chrX 20942187 20942217 hobo 18 1467 6.0 4.0 5.0 3.0 1498 chrX 20940719 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942217 intergenic not near genes chrX_18_20940001 chrX_20940001 RAL-181 2147 chrX 21077599 21077631 chrX 21077686 21077696 5 80 0.5 0.5 0.5 3.3 97 chrX 21077599 intron bves + chrX 21077648 intron bves + chrX 21077696 intron bves + chrX_5_21075001 chrX_21075001 RAL-181 2148 chrX 21078770 21078780 chrX 21078848 21078858 5 77 0.5 1.0 0.8 2.8 88 chrX 21078770 intron bves + chrX 21078814 intron bves + chrX 21078858 intron bves + chrX_5_21075001 chrX_21075001 RAL-181 2149 chrX 21086131 21086166 chrX 21087160 21087180 jockey 13 1026 3.5 2.5 3.0 3.2 1049 chrX 21086131 intergenic not near genes chrX 21086656 intergenic not near genes chrX 21087180 intergenic not near genes chrX_13_21085001 chrX_21085001 RAL-181 2150 chrX 21088041 21088067 chrX 21088173 21088199 5 130 3.5 1.5 2.5 1.4 158 chrX 21088041 intergenic not near genes chrX 21088120 intergenic not near genes chrX 21088199 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-181 2151 chrX 21246901 21246908 chrX 21246977 21246987 4 78 4.5 5.0 4.8 0.7 86 chrX 21246901 intron CG32521 - chrX 21246944 intron CG32521 - chrX 21246987 intron CG32521 - chrX_4_21245001 chrX_21245001 RAL-181 2152 chrX 21254651 21254670 chrX 21255567 21255585 hopper2 5 915 4.0 0.0 2.0 1.7 934 chrX 21254651 intron CG32521 - chrX 21255118 intron CG32521 - chrX 21255585 intron CG32521 - chrX_5_21255001 chrX_21255001 RAL-181 2153 chrX 21455215 21455245 chrX 21455393 21455432 4 183 1.0 0.0 0.5 2.7 217 chrX 21455215 intron CG42343 - chrX 21455324 intron CG42343 - chrX 21455432 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-181 2154 chrX 21458703 21458723 chrX 21464139 21464159 Ivk 5 5436 2.5 4.0 3.2 1.2 5456 chrX 21458703 intergenic not near genes chrX 21461431 intergenic not near genes chrX 21464159 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-181 2155 chrX 21500570 21500589 chrX 21500771 21500790 4 198 0.0 4.0 2.0 1.3 220 chrX 21500570 intron CR45082 - chrX 21500680 intron CR45082 - chrX 21500790 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-181 2156 chrX 21565412 21565441 chrX 21565490 21565519 10 75 2.0 2.5 2.2 3.1 107 chrX 21565412 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565519 intergenic not near genes chrX_10_21565001 chrX_21565001 RAL-181 2157 chrX 21575542 21575557 chrX 21575621 21575636 5 79 0.5 3.5 2.0 1.7 94 chrX 21575542 intergenic not near genes chrX 21575589 intergenic not near genes chrX 21575636 intergenic not near genes chrX_5_21575001 chrX_21575001 RAL-181 2158 chrX 22478872 22478886 chrX 22479004 22479018 5 133 5.0 1.5 3.2 1.2 146 chrX 22478872 intron CG12576 - chrX 22478945 intron CG12576 - chrX 22479018 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-181 2159 chrX 22574816 22574831 chrX 22575049 22575066 4 234 1.0 2.5 1.8 1.4 250 chrX 22574816 intergenic not near genes chrX 22574941 intergenic not near genes chrX 22575066 intergenic not near genes chrX_4_22570001 chrX_22570001 RAL-181 2160 chrX 22564559 22564578 chrX 22575131 22575150 jockey 9 10573 16.5 10.5 13.5 0.6 10591 chrX 22564559 intergenic not near genes chrX 22569854 intergenic not near genes chrX 22575150 intergenic not near genes chrX_9_22565001 chrX_22565001 RAL-181 2161 chrX 22660567 22660601 chrX 22660650 22660666 14 81 2.5 0.0 1.2 6.4 99 chrX 22660567 intron CR44997 + chrX 22660616 intron CR44997 + chrX 22660666 intron CR44997 + chrX_14_22660001 chrX_22660001 RAL-181 2162 chrX 22697498 22697523 chrX 22701795 22701820 Juan 11 4296 2.0 5.0 3.5 2.4 4322 chrX 22697498 intron CR44997 + chrX 22699659 intron CR44997 + chrX 22701820 intron CR44997 + chrX_11_22695001 chrX_22695001 RAL-181 2163 chrX 22771516 22771537 chrX 22774807 22774821 297 8 3290 3.5 6.5 5.0 1.3 3305 chrX 22771516 intron CR44997 + chrX 22773168 intron CR44997 + chrX 22774821 intron CR44997 + chrX_8_22770001 chrX_22770001 RAL-181 2164 chrX 22967419 22967529 chrX 23154570 23154688 diver 4 187166 2.5 6.5 4.5 0.7 187269 chrX 22967419 intergenic not near genes chrX 23061054 intergenic not near genes chrX 23154688 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-181 2165 chrX 22987101 22987134 chrX 22989760 22989793 Burdock 4 2653 0.5 0.5 0.5 2.7 2692 chrX 22987101 intron,intron stnA -,stnB - chrX 22988447 intron,intron stnA -,stnB - chrX 22989793 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 RAL-181 2166 chrX 22992394 22992429 chrX 22992524 22992559 13 130 1.0 3.5 2.2 4.1 165 chrX 22992394 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992559 intron,intron stnA -,stnB - chrX_13_22990001 chrX_22990001 RAL-181 2167 chrX 22996320 22996339 chrX 23003550 23003571 roo 7 7232 4.5 4.5 4.5 1.3 7251 chrX 22996320 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-181 2168 chrX 23036383 23036411 chrX 23037782 23037811 pogo 7 1400 2.0 1.0 1.5 2.8 1428 chrX 23036383 intron CG12061 + chrX 23037097 intron CG12061 + chrX 23037811 intron CG12061 + chrX_7_23035001 chrX_23035001 RAL-181 2169 chrY 311343 311344 chrY 311459 311461 4 116 1.5 1.0 1.2 1.8 118 chrY 311343 intergenic not near genes chrY 311402 intergenic not near genes chrY 311461 intergenic not near genes chrY_4_310001 chrY_310001 RAL-181 2170 chrY 975791 975819 chrY 975871 975878 11 85 166.5 190.5 178.5 0.1 87 chrY 975791 intergenic not near genes chrY 975834 intergenic not near genes chrY 975878 intergenic not near genes chrY_11_975001 chrY_975001 RAL-181