SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47492 chr2L 52563 52597 jockey 20 5103 5.0 5.5 5.2 3.2 5139 chr2L 47458 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52597 intron Cda5 - chr2L_20_50001 chr2L_50001 RAL-176 2 chr2L 263299 263330 chr2L 263445 263476 5 146 1.5 4.5 3.0 1.2 177 chr2L 263299 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263476 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 RAL-176 3 chr2L 276546 276566 chr2L 276629 276649 10 82 2.5 8.5 5.5 1.5 103 chr2L 276546 intron CG17078 - chr2L 276598 intron CG17078 - chr2L 276649 intron CG17078 - chr2L_10_275001 chr2L_275001 RAL-176 4 chr2L 297684 297719 chr2L 297784 297818 15 98 0.5 4.0 2.2 4.7 134 chr2L 297684 intergenic Pi3K21B +,Hop + chr2L 297751 intergenic Pi3K21B +,Hop + chr2L 297818 intergenic Pi3K21B +,Hop + chr2L_15_295001 chr2L_295001 RAL-176 5 chr2L 325130 325144 chr2L 325207 325211 8 74 7.5 9.5 8.5 0.8 81 chr2L 325130 intron Plc21C + chr2L 325170 intron Plc21C + chr2L 325211 intron Plc21C + chr2L_8_325001 chr2L_325001 RAL-176 6 chr2L 325146 325153 chr2L 325201 325230 5 73 8.0 9.0 8.5 0.5 84 chr2L 325146 intron Plc21C + chr2L 325188 intron Plc21C + chr2L 325230 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-176 7 chr2L 347885 347916 chr2L 355385 355416 blood 6 7499 2.0 0.5 1.2 2.7 7531 chr2L 347885 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355416 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-176 8 chr2L 459399 459431 chr2L 459479 459511 20 78 6.0 3.5 4.8 3.4 112 chr2L 459399 3` UTR CG4297 - chr2L 459455 3` UTR CG4297 - chr2L 459511 3` UTR CG4297 - chr2L_20_455001 chr2L_455001 RAL-176 9 chr2L 467356 467369 chr2L 467455 467465 4 98 9.5 11.5 10.5 0.3 109 chr2L 467356 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467465 intron CG4297 - chr2L_4_465001 chr2L_465001 RAL-176 10 chr2L 590619 590653 chr2L 590720 590753 16 99 5.0 6.5 5.8 2.4 134 chr2L 590619 intron Gsc - chr2L 590686 intron Gsc - chr2L 590753 intron Gsc - chr2L_16_590001 chr2L_590001 RAL-176 11 chr2L 635001 635010 chr2L 635088 635097 8 87 5.0 6.5 5.8 1.2 96 chr2L 635001 intergenic not near genes chr2L 635049 intergenic not near genes chr2L 635097 intergenic not near genes chr2L_8_635001 chr2L_635001 RAL-176 12 chr2L 635249 635262 chr2L 635657 635676 9 413 5.0 2.5 3.8 1.9 427 chr2L 635249 intergenic not near genes chr2L 635462 intergenic not near genes chr2L 635676 intergenic not near genes chr2L_9_635001 chr2L_635001 RAL-176 13 chr2L 666278 666303 chr2L 666354 666377 8 75 6.0 0.5 3.2 1.9 99 chr2L 666278 intron ds - chr2L 666328 intron ds - chr2L 666377 intron ds - chr2L_8_665001 chr2L_665001 RAL-176 14 chr2L 686922 686937 chr2L 695962 695977 roo 6 9040 5.5 10.0 7.8 0.7 9055 chr2L 686922 intron ds - chr2L 691450 intron ds - chr2L 695977 intron ds - chr2L_6_690001 chr2L_690001 RAL-176 15 chr2L 736878 736899 chr2L 736983 737004 8 105 1.5 1.0 1.2 3.6 126 chr2L 736878 intergenic Eaat2 - chr2L 736941 intergenic Eaat2 - chr2L 737004 intergenic Eaat2 - chr2L_8_735001 chr2L_735001 RAL-176 16 chr2L 763599 763627 chr2L 763672 763702 8 75 3.5 1.5 2.5 2.3 103 chr2L 763599 intergenic not near genes chr2L 763650 intergenic not near genes chr2L 763702 intergenic not near genes chr2L_8_760001 chr2L_760001 RAL-176 17 chr2L 770464 770493 chr2L 772245 772273 Bari1 18 1779 2.5 3.5 3.0 4.5 1809 chr2L 770464 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772273 intergenic CR44614 + chr2L_18_770001 chr2L_770001 RAL-176 18 chr2L 877840 877860 chr2L 877921 877941 15 81 11.0 4.5 7.8 1.7 101 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_15_875001 chr2L_875001 RAL-176 19 chr2L 892406 892426 chr2L 892521 892541 8 114 3.5 4.0 3.8 1.7 135 chr2L 892406 intergenic not near genes chr2L 892474 intergenic not near genes chr2L 892541 intergenic not near genes chr2L_8_890001 chr2L_890001 RAL-176 20 chr2L 892427 892432 chr2L 892516 892547 4 102 3.0 4.0 3.5 0.9 120 chr2L 892427 intergenic not near genes chr2L 892487 intergenic not near genes chr2L 892547 intergenic not near genes chr2L_4_890001 chr2L_890001 RAL-176 21 chr2L 922472 922495 chr2L 922553 922576 8 81 1.5 4.5 3.0 2.0 104 chr2L 922472 intergenic CG4341 + chr2L 922524 intergenic CG4341 + chr2L 922576 intergenic CG4341 + chr2L_8_920001 chr2L_920001 RAL-176 22 chr2L 931632 931670 chr2L 931711 931742 16 75 4.5 3.0 3.8 3.3 110 chr2L 931632 intron CG4341 + chr2L 931687 intron CG4341 + chr2L 931742 intron CG4341 + chr2L_16_930001 chr2L_930001 RAL-176 23 chr2L 953495 953526 chr2L 953579 953611 17 78 8.0 9.5 8.8 1.7 116 chr2L 953495 exon CG4341 + chr2L 953553 intron CG4341 + chr2L 953611 intron CG4341 + chr2L_17_950001 chr2L_950001 RAL-176 24 chr2L 964563 964574 chr2L 964647 964658 9 84 2.5 9.0 5.8 1.3 95 chr2L 964563 intergenic not near genes chr2L 964610 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_9_960001 chr2L_960001 RAL-176 25 chr2L 976753 976770 chr2L 976829 976847 9 77 6.0 2.0 4.0 1.8 94 chr2L 976753 intergenic not near genes chr2L 976800 intergenic not near genes chr2L 976847 intergenic not near genes chr2L_9_975001 chr2L_975001 RAL-176 26 chr2L 976877 976911 chr2L 984513 984547 roo 8 7636 3.0 0.5 1.8 2.9 7670 chr2L 976877 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-176 27 chr2L 1019445 1019485 chr2L 1019529 1019555 47 79 13.5 7.0 10.2 4.2 110 chr2L 1019445 intron IA-2 - chr2L 1019500 intron IA-2 - chr2L 1019555 intron IA-2 - chr2L_47_1015001 chr2L_1015001 RAL-176 28 chr2L 1028844 1028870 chr2L 1028940 1028954 16 92 4.0 4.5 4.2 3.1 110 chr2L 1028844 intron IA-2 - chr2L 1028899 intron IA-2 - chr2L 1028954 intron IA-2 - chr2L_16_1025001 chr2L_1025001 RAL-176 29 chr2L 1099529 1099565 chr2L 1099757 1099793 30 226 8.0 12.0 10.0 2.7 264 chr2L 1099529 intron CG4629 - chr2L 1099661 intron CG4629 - chr2L 1099793 intron CG4629 - chr2L_30_1095001 chr2L_1095001 RAL-176 30 chr2L 1123425 1123459 chr2L 1123614 1123648 10 189 5.0 5.5 5.2 1.6 223 chr2L 1123425 intron Pino - chr2L 1123536 intron Pino - chr2L 1123648 intron Pino - chr2L_10_1120001 chr2L_1120001 RAL-176 31 chr2L 1126671 1126703 chr2L 1126747 1126779 21 74 9.0 5.5 7.2 2.6 108 chr2L 1126671 intron Pino - chr2L 1126725 intron Pino - chr2L 1126779 intron Pino - chr2L_21_1125001 chr2L_1125001 RAL-176 32 chr2L 1156864 1156893 chr2L 1156964 1156970 8 99 12.0 8.5 10.2 0.7 106 chr2L 1156864 intron capt - chr2L 1156917 intron capt - chr2L 1156970 intron capt - chr2L_8_1155001 chr2L_1155001 RAL-176 33 chr2L 1220127 1220159 chr2L 1227593 1227625 blood 15 7465 8.0 4.0 6.0 2.1 7498 chr2L 1220127 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_15_1220001 chr2L_1220001 RAL-176 34 chr2L 1322023 1322055 chr2L 1322112 1322144 10 86 2.5 3.5 3.0 2.5 121 chr2L 1322023 intergenic not near genes chr2L 1322084 intergenic not near genes chr2L 1322144 intergenic not near genes chr2L_10_1320001 chr2L_1320001 RAL-176 35 chr2L 1536501 1536525 chr2L 1536632 1536657 10 128 0.0 6.0 3.0 2.5 156 chr2L 1536501 intergenic not near genes chr2L 1536579 intergenic not near genes chr2L 1536657 intergenic not near genes chr2L_10_1535001 chr2L_1535001 RAL-176 36 chr2L 1570688 1570718 chr2L 1573560 1573590 F-element 10 2872 7.0 4.0 5.5 1.5 2902 chr2L 1570688 intron haf + chr2L 1572139 intron haf + chr2L 1573590 intron haf + chr2L_10_1570001 chr2L_1570001 RAL-176 37 chr2L 1590961 1590966 chr2L 1591037 1591042 6 76 14.0 5.0 9.5 0.6 81 chr2L 1590961 intron haf + chr2L 1591002 intron haf + chr2L 1591042 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-176 38 chr2L 1590973 1590991 chr2L 1591033 1591067 17 75 4.0 3.0 3.5 3.8 94 chr2L 1590973 intron haf + chr2L 1591020 intron haf + chr2L 1591067 intron haf + chr2L_17_1590001 chr2L_1590001 RAL-176 39 chr2L 1617129 1617163 chr2L 1617207 1617242 13 77 2.5 1.5 2.0 4.3 113 chr2L 1617129 intergenic not near genes chr2L 1617186 intergenic not near genes chr2L 1617242 intergenic not near genes chr2L_13_1615001 chr2L_1615001 RAL-176 40 chr2L 1635395 1635430 chr2L 1635531 1635566 8 135 0.5 2.0 1.2 3.6 171 chr2L 1635395 intergenic not near genes chr2L 1635480 intergenic not near genes chr2L 1635566 intergenic not near genes chr2L_8_1635001 chr2L_1635001 RAL-176 41 chr2L 1662024 1662035 chr2L 1662109 1662120 4 85 2.0 0.0 1.0 2.0 96 chr2L 1662024 intron chinmo + chr2L 1662072 intron chinmo + chr2L 1662120 intron chinmo + chr2L_4_1660001 chr2L_1660001 RAL-176 42 chr2L 1711354 1711388 chr2L 1711678 1711682 mdg3 21 321 10.5 10.5 10.5 1.8 328 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711518 3` UTR frtz - chr2L 1711682 3` UTR frtz - chr2L_21_1710001 chr2L_1710001 RAL-176 43 chr2L 1721827 1721851 chr2L 1721911 1721935 11 84 0.5 5.5 3.0 2.8 108 chr2L 1721827 intron Rim2 - chr2L 1721881 intron Rim2 - chr2L 1721935 intron Rim2 - chr2L_11_1720001 chr2L_1720001 RAL-176 44 chr2L 1993197 1993230 chr2L 1993283 1993316 17 84 1.0 2.5 1.8 6.1 119 chr2L 1993197 intergenic not near genes chr2L 1993256 intergenic not near genes chr2L 1993316 intergenic not near genes chr2L_17_1990001 chr2L_1990001 RAL-176 45 chr2L 2100378 2100407 chr2L 2109527 2109543 roo 14 9149 9.5 4.5 7.0 1.8 9165 chr2L 2100378 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109543 intron dpr3 - chr2L_14_2100001 chr2L_2100001 RAL-176 46 chr2L 2112121 2112133 chr2L 2119782 2119795 opus 6 7661 1.0 7.5 4.2 1.2 7674 chr2L 2112121 intergenic not near genes chr2L 2115958 intergenic not near genes chr2L 2119795 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-176 47 chr2L 2112134 2112144 chr2L 2119776 2119806 opus 9 7656 1.0 5.5 3.2 2.1 7672 chr2L 2112134 intergenic not near genes chr2L 2115970 intergenic not near genes chr2L 2119806 intergenic not near genes chr2L_9_2115001 chr2L_2115001 RAL-176 48 chr2L 2175949 2175982 chr2L 2176027 2176060 8 78 1.5 1.5 1.5 3.2 111 chr2L 2175949 intron aop - chr2L 2176004 intron aop - chr2L 2176060 intron aop - chr2L_8_2175001 chr2L_2175001 RAL-176 49 chr2L 2186937 2186961 chr2L 2187013 2187029 17 75 2.0 11.0 6.5 2.3 92 chr2L 2186937 intergenic CR44066 - chr2L 2186983 3` UTR CR44066 - chr2L 2187029 3` UTR CR44066 - chr2L_17_2185001 chr2L_2185001 RAL-176 50 chr2L 2260805 2260837 chr2L 2260891 2260923 18 85 3.5 3.5 3.5 4.0 118 chr2L 2260805 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260923 intergenic not near genes chr2L_18_2260001 chr2L_2260001 RAL-176 51 chr2L 2262309 2262339 chr2L 2262386 2262416 8 75 1.5 0.0 0.8 4.4 107 chr2L 2262309 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262416 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-176 52 chr2L 2294042 2294072 chr2L 2299247 2299268 copia 5 5201 0.5 2.0 1.2 2.3 5226 chr2L 2294042 intergenic not near genes chr2L 2296655 intergenic not near genes chr2L 2299268 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-176 53 chr2L 2310802 2310836 chr2L 2311072 2311106 14 268 6.0 3.0 4.5 2.5 304 chr2L 2310802 5` UTR CG9967 - chr2L 2310954 intron CG9967 - chr2L 2311106 intron CG9967 - chr2L_14_2310001 chr2L_2310001 RAL-176 54 chr2L 2364093 2364097 chr2L 2364169 2364173 4 76 8.0 13.0 10.5 0.3 80 chr2L 2364093 intron Rab5 - chr2L 2364133 intron Rab5 - chr2L 2364173 intron Rab5 - chr2L_4_2360001 chr2L_2360001 RAL-176 55 chr2L 2372366 2372402 chr2L 2372452 2372482 5 85 0.0 2.0 1.0 2.5 116 chr2L 2372366 intergenic CG3609 - chr2L 2372424 intergenic CG3609 - chr2L 2372482 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-176 56 chr2L 2398928 2398961 chr2L 2399003 2399039 25 77 0.5 8.5 4.5 4.5 111 chr2L 2398928 intron VGlut + chr2L 2398984 intron VGlut + chr2L 2399039 intron VGlut + chr2L_25_2395001 chr2L_2395001 RAL-176 57 chr2L 2412186 2412208 chr2L 2412279 2412311 13 107 2.5 5.0 3.8 2.7 125 chr2L 2412186 intron CG18641 - chr2L 2412248 intron CG18641 - chr2L 2412311 intron CG18641 - chr2L_13_2410001 chr2L_2410001 RAL-176 58 chr2L 2557835 2557847 chr2L 2557920 2557932 10 85 0.0 6.0 3.0 2.5 97 chr2L 2557835 intergenic not near genes chr2L 2557884 intergenic not near genes chr2L 2557932 intergenic not near genes chr2L_10_2555001 chr2L_2555001 RAL-176 59 chr2L 2565546 2565566 chr2L 2571614 2571631 297 6 6068 7.5 7.0 7.2 0.7 6085 chr2L 2565546 exon Cyp309a2 - chr2L 2568588 intron Cyp309a2 - chr2L 2571631 intron Cyp309a2 - chr2L_6_2565001 chr2L_2565001 RAL-176 60 chr2L 2587825 2587847 chr2L 2587895 2587922 6 76 4.0 2.5 3.2 1.4 97 chr2L 2587825 intergenic not near genes chr2L 2587874 intergenic not near genes chr2L 2587922 intergenic not near genes chr2L_6_2585001 chr2L_2585001 RAL-176 61 chr2L 2618034 2618070 chr2L 2618113 2618149 25 78 4.5 2.0 3.2 6.0 115 chr2L 2618034 intergenic not near genes chr2L 2618092 intergenic not near genes chr2L 2618149 intergenic not near genes chr2L_25_2615001 chr2L_2615001 RAL-176 62 chr2L 2661219 2661230 chr2L 2663032 2663068 I-element 9 1826 2.5 2.0 2.2 2.8 1849 chr2L 2661219 intergenic not near genes chr2L 2662144 intergenic not near genes chr2L 2663068 intergenic not near genes chr2L_9_2660001 chr2L_2660001 RAL-176 63 chr2L 2698869 2698894 chr2L 2698956 2698981 15 87 1.0 4.5 2.8 3.9 112 chr2L 2698869 intron CG31690 + chr2L 2698925 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_15_2695001 chr2L_2695001 RAL-176 64 chr2L 2713512 2713549 chr2L 2713611 2713648 29 97 5.5 11.0 8.2 3.2 136 chr2L 2713512 intron CG31690 + chr2L 2713580 intron CG31690 + chr2L 2713648 intron CG31690 + chr2L_29_2710001 chr2L_2710001 RAL-176 65 chr2L 2772610 2772628 chr2L 2779195 2779211 297 9 6583 5.0 4.5 4.8 1.6 6601 chr2L 2772610 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779211 3` UTR Syt1 - chr2L_9_2775001 chr2L_2775001 RAL-176 66 chr2L 2826544 2826574 chr2L 2826636 2826659 10 86 0.0 6.0 3.0 2.5 115 chr2L 2826544 intron Duox - chr2L 2826602 intron Duox - chr2L 2826659 intron Duox - chr2L_10_2825001 chr2L_2825001 RAL-176 67 chr2L 2885374 2885393 chr2L 2885451 2885469 7 77 3.0 2.0 2.5 2.0 95 chr2L 2885374 intron NTPase - chr2L 2885422 intron NTPase - chr2L 2885469 intron NTPase - chr2L_7_2885001 chr2L_2885001 RAL-176 68 chr2L 2937419 2937451 chr2L 2937495 2937528 11 76 2.5 2.0 2.2 3.4 109 chr2L 2937419 intron lilli + chr2L 2937474 intron lilli + chr2L 2937528 intron lilli + chr2L_11_2935001 chr2L_2935001 RAL-176 69 chr2L 3073030 3073064 chr2L 3078233 3078267 copia 16 5203 2.5 5.5 4.0 3.2 5237 chr2L 3073030 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_16_3075001 chr2L_3075001 RAL-176 70 chr2L 3108865 3108890 chr2L 3108942 3108967 15 76 5.5 0.0 2.8 3.9 102 chr2L 3108865 intron toc - chr2L 3108916 intron toc - chr2L 3108967 intron toc - chr2L_15_3105001 chr2L_3105001 RAL-176 71 chr2L 3202742 3202772 chr2L 3210171 3210200 mdg1 4 7428 0.0 1.5 0.8 2.2 7458 chr2L 3202742 intergenic not near genes chr2L 3206471 intergenic not near genes chr2L 3210200 intergenic CR45336 + chr2L_4_3205001 chr2L_3205001 RAL-176 72 chr2L 3251499 3251526 chr2L 3259063 3259088 springer 10 7564 3.0 6.5 4.8 1.7 7589 chr2L 3251499 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259088 intergenic not near genes chr2L_10_3255001 chr2L_3255001 RAL-176 73 chr2L 3291237 3291268 chr2L 3291317 3291348 11 79 2.0 5.0 3.5 2.4 111 chr2L 3291237 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291348 3` UTR CG9664 - chr2L_11_3290001 chr2L_3290001 RAL-176 74 chr2L 3393805 3393817 chr2L 3393871 3393886 5 78 7.5 8.0 7.8 0.6 81 chr2L 3393805 intergenic not near genes chr2L 3393846 intergenic not near genes chr2L 3393886 intergenic not near genes chr2L_5_3390001 chr2L_3390001 RAL-176 75 chr2L 3440293 3440302 chr2L 3440371 3440373 4 75 0.5 5.5 3.0 1.0 80 chr2L 3440293 intergenic not near genes chr2L 3440333 intergenic not near genes chr2L 3440373 intergenic not near genes chr2L_4_3440001 chr2L_3440001 RAL-176 76 chr2L 3508353 3508376 chr2L 3508431 3508454 9 78 0.0 6.5 3.2 2.1 101 chr2L 3508353 intergenic tim -,CR45299 + chr2L 3508404 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_9_3505001 chr2L_3505001 RAL-176 77 chr2L 3523033 3523054 chr2L 3523146 3523167 8 113 4.5 5.0 4.8 1.4 134 chr2L 3523033 exon Sr-CIV - chr2L 3523100 intron Sr-CIV - chr2L 3523167 exon Sr-CIV - chr2L_8_3520001 chr2L_3520001 RAL-176 78 chr2L 3582883 3582911 chr2L 3582960 3582988 12 75 3.5 8.0 5.8 1.8 105 chr2L 3582883 intergenic not near genes chr2L 3582936 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_12_3580001 chr2L_3580001 RAL-176 79 chr2L 3603632 3603650 chr2L 3603727 3603745 11 95 1.5 3.0 2.2 3.4 113 chr2L 3603632 intergenic not near genes chr2L 3603688 intergenic not near genes chr2L 3603745 intergenic odd - chr2L_11_3600001 chr2L_3600001 RAL-176 80 chr2L 3649791 3649806 chr2L 3654993 3655003 copia 4 5201 3.5 4.5 4.0 0.8 5212 chr2L 3649791 intron for - chr2L 3652397 intron for - chr2L 3655003 intron for - chr2L_4_3650001 chr2L_3650001 RAL-176 81 chr2L 3696102 3696122 chr2L 3696179 3696199 10 77 1.0 4.5 2.8 2.6 97 chr2L 3696102 intergenic CG16712 - chr2L 3696150 intergenic CG16712 - chr2L 3696199 intergenic CG16712 - chr2L_10_3695001 chr2L_3695001 RAL-176 82 chr2L 3819035 3819060 chr2L 3819117 3819141 18 82 4.0 0.5 2.2 5.6 106 chr2L 3819035 intergenic not near genes chr2L 3819088 intergenic not near genes chr2L 3819141 intergenic not near genes chr2L_18_3815001 chr2L_3815001 RAL-176 83 chr2L 3906049 3906058 chr2L 3906190 3906201 4 143 6.0 4.5 5.2 0.6 152 chr2L 3906049 intron fred - chr2L 3906125 intron fred - chr2L 3906201 intron fred - chr2L_4_3905001 chr2L_3905001 RAL-176 84 chr2L 3943796 3943820 chr2L 3943887 3943910 7 90 3.0 1.5 2.2 2.2 114 chr2L 3943796 intron fred - chr2L 3943853 intron fred - chr2L 3943910 intron fred - chr2L_7_3940001 chr2L_3940001 RAL-176 85 chr2L 4066041 4066064 chr2L 4068866 4068889 Juan 10 2825 6.5 4.5 5.5 1.5 2848 chr2L 4066041 intron ed + chr2L 4067465 intron ed + chr2L 4068889 intron ed + chr2L_10_4065001 chr2L_4065001 RAL-176 86 chr2L 4152200 4152252 chr2L 16217660 16217660 6 12065418 7.5 34.0 20.8 0.3 12065460 chr2L 4152200 intergenic not near genes chr2L 10184930 exon Sur - chr2L 16217660 intergenic not near genes chr2L_6_10180001 chr2L_10180001 RAL-176 87 chr2L 4159408 4159440 chr2L 4159608 4159640 10 200 1.5 6.0 3.8 2.1 232 chr2L 4159408 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159640 intergenic not near genes chr2L_10_4155001 chr2L_4155001 RAL-176 88 chr2L 4181300 4181305 chr2L 4183932 4183937 Burdock 4 2632 2.5 13.5 8.0 0.4 2637 chr2L 4181300 intergenic not near genes chr2L 4182618 intergenic not near genes chr2L 4183937 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-176 89 chr2L 4265662 4265673 chr2L 4265752 4265763 7 90 2.0 0.0 1.0 3.5 101 chr2L 4265662 intergenic not near genes chr2L 4265712 intergenic not near genes chr2L 4265763 intergenic not near genes chr2L_7_4265001 chr2L_4265001 RAL-176 90 chr2L 4275078 4275102 chr2L 4275162 4275186 18 83 2.5 6.0 4.2 3.5 108 chr2L 4275078 intergenic not near genes chr2L 4275132 intergenic not near genes chr2L 4275186 intergenic not near genes chr2L_18_4275001 chr2L_4275001 RAL-176 91 chr2L 4342267 4342279 chr2L 4342361 4342376 5 96 4.5 2.5 3.5 1.1 109 chr2L 4342267 intron Atet + chr2L 4342322 intron Atet + chr2L 4342376 intron Atet + chr2L_5_4340001 chr2L_4340001 RAL-176 92 chr2L 4601704 4601735 chr2L 4609145 4609176 mdg1 16 7439 3.0 4.5 3.8 3.3 7472 chr2L 4601704 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-176 93 chr2L 4698787 4698805 chr2L 4699321 4699339 4 534 36.0 10.5 23.2 0.2 552 chr2L 4698787 intron CG34351 + chr2L 4699063 intron CG34351 + chr2L 4699339 intron CG34351 + chr2L_4_4695001 chr2L_4695001 RAL-176 94 chr2L 4759494 4759517 chr2L 4759578 4759606 13 85 1.0 7.0 4.0 2.6 112 chr2L 4759494 intron CG15630 - chr2L 4759550 intron CG15630 - chr2L 4759606 intron CG15630 - chr2L_13_4755001 chr2L_4755001 RAL-176 95 chr2L 4792729 4792759 chr2L 4792835 4792867 19 107 6.0 6.5 6.2 2.6 138 chr2L 4792729 intron CG15630 - chr2L 4792798 intron CG15630 - chr2L 4792867 intron CG15630 - chr2L_19_4790001 chr2L_4790001 RAL-176 96 chr2L 4793308 4793318 chr2L 4793603 4793613 6 295 5.5 2.5 4.0 1.2 305 chr2L 4793308 intron CG15630 - chr2L 4793460 intron CG15630 - chr2L 4793613 intron CG15630 - chr2L_6_4790001 chr2L_4790001 RAL-176 97 chr2L 5040683 5040718 chr2L 5040779 5040814 10 96 2.0 4.0 3.0 2.5 131 chr2L 5040683 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040748 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040814 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_10_5040001 chr2L_5040001 RAL-176 98 chr2L 5092415 5092443 chr2L 5092502 5092530 8 87 3.0 0.5 1.8 2.9 115 chr2L 5092415 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092530 intron pgant5 - chr2L_8_5090001 chr2L_5090001 RAL-176 99 chr2L 5120976 5121006 chr2L 5121068 5121097 11 93 5.5 3.0 4.2 2.1 121 chr2L 5120976 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121097 intron Msp300 + chr2L_11_5120001 chr2L_5120001 RAL-176 100 chr2L 5147723 5147757 chr2L 5147955 5147989 14 227 3.5 2.5 3.0 3.5 266 chr2L 5147723 intron Msp300 + chr2L 5147856 intron Msp300 + chr2L 5147989 intron Msp300 + chr2L_14_5145001 chr2L_5145001 RAL-176 101 chr2L 5242936 5242937 chr2L 16217660 16217660 19 10974724 29.5 34.0 31.8 0.6 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_19_10730001 chr2L_10730001 RAL-176 102 chr2L 5244295 5244310 chr2L 5244386 5244403 7 93 1.0 3.5 2.2 2.2 108 chr2L 5244295 intron tkv - chr2L 5244349 intron tkv - chr2L 5244403 intron tkv - chr2L_7_5240001 chr2L_5240001 RAL-176 103 chr2L 5262526 5262545 chr2L 5262603 5262621 5 75 9.5 4.0 6.8 0.6 95 chr2L 5262526 intron tkv - chr2L 5262574 intron tkv - chr2L 5262621 intron tkv - chr2L_5_5260001 chr2L_5260001 RAL-176 104 chr2L 5342764 5342801 chr2L 5345144 5345181 Doc 6 2380 4.5 1.5 3.0 1.5 2417 chr2L 5342764 intergenic not near genes chr2L 5343972 intergenic not near genes chr2L 5345181 intergenic not near genes chr2L_6_5340001 chr2L_5340001 RAL-176 105 chr2L 5397592 5397629 chr2L 5397730 5397767 13 133 1.5 4.0 2.8 3.4 175 chr2L 5397592 intergenic not near genes chr2L 5397680 intergenic not near genes chr2L 5397767 intergenic not near genes chr2L_13_5395001 chr2L_5395001 RAL-176 106 chr2L 5762443 5762475 chr2L 5762528 5762557 12 85 3.0 4.0 3.5 2.7 114 chr2L 5762443 intergenic CG11030 +,obst-E - chr2L 5762500 intergenic obst-E -,CG11030 + chr2L 5762557 3` UTR obst-E - chr2L_12_5760001 chr2L_5760001 RAL-176 107 chr2L 5819674 5819705 chr2L 5819758 5819789 5 84 1.0 4.0 2.5 1.4 115 chr2L 5819674 intergenic not near genes chr2L 5819732 intergenic not near genes chr2L 5819789 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-176 108 chr2L 5820396 5820424 chr2L 5820552 5820580 12 155 1.5 3.0 2.2 3.8 184 chr2L 5820396 intergenic not near genes chr2L 5820488 intergenic not near genes chr2L 5820580 intergenic not near genes chr2L_12_5820001 chr2L_5820001 RAL-176 109 chr2L 5827720 5827739 chr2L 5836725 5836747 roo 12 9007 6.5 2.0 4.2 2.3 9027 chr2L 5827720 intron TrissinR + chr2L 5832234 intron TrissinR + chr2L 5836747 intron TrissinR + chr2L_12_5830001 chr2L_5830001 RAL-176 110 chr2L 5894449 5894483 chr2L 5895236 5895271 6 788 3.5 3.0 3.2 1.4 822 chr2L 5894449 intergenic not near genes chr2L 5894860 intergenic not near genes chr2L 5895271 intergenic not near genes chr2L_6_5890001 chr2L_5890001 RAL-176 111 chr2L 5900261 5900290 chr2L 5900353 5900382 10 89 3.0 6.0 4.5 1.8 121 chr2L 5900261 3` UTR CR44579 - chr2L 5900322 3` UTR CR44579 - chr2L 5900382 intergenic CR44579 - chr2L_10_5900001 chr2L_5900001 RAL-176 112 chr2L 5904462 5904470 chr2L 5904542 5904550 9 80 8.0 0.0 4.0 1.8 88 chr2L 5904462 intron CG9021 - chr2L 5904506 intron CG9021 - chr2L 5904550 intron CG9021 - chr2L_9_5900001 chr2L_5900001 RAL-176 113 chr2L 5931331 5931514 chr2L 5931443 5931623 4 110 1.0 3.0 2.0 1.3 292 chr2L 5931331 intron dsf + chr2L 5931477 intron dsf + chr2L 5931623 intron dsf + chr2L_4_5930001 chr2L_5930001 RAL-176 114 chr2L 5944553 5944566 chr2L 5948994 5949009 8 4441 51.0 21.0 36.0 0.2 4456 chr2L 5944553 intron Gpdh + chr2L 5946781 intron Gpdh + chr2L 5949009 intergenic Gpdh +,CG9044 + chr2L_8_5945001 chr2L_5945001 RAL-176 115 chr2L 6020210 6020242 chr2L 6020294 6020323 21 80 3.0 10.0 6.5 2.8 113 chr2L 6020210 intergenic not near genes chr2L 6020266 intergenic not near genes chr2L 6020323 intergenic not near genes chr2L_21_6020001 chr2L_6020001 RAL-176 116 chr2L 6050440 6050465 chr2L 6050544 6050569 12 104 5.0 2.5 3.8 2.5 129 chr2L 6050440 intergenic CG12393 +,CG9135 + chr2L 6050504 intergenic CG12393 +,CG9135 + chr2L 6050569 intergenic CG12393 +,CG9135 + chr2L_12_6050001 chr2L_6050001 RAL-176 117 chr2L 6103217 6103251 chr2L 6103294 6103328 27 76 4.0 11.0 7.5 3.2 111 chr2L 6103217 intron stai + chr2L 6103272 intron stai + chr2L 6103328 intron stai + chr2L_27_6100001 chr2L_6100001 RAL-176 118 chr2L 6283944 6283979 chr2L 6284055 6284090 4 111 0.0 0.5 0.2 3.3 146 chr2L 6283944 intron Ddr + chr2L 6284017 intron Ddr + chr2L 6284090 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-176 119 chr2L 6318744 6318760 chr2L 6318889 6318914 9 151 6.0 1.5 3.8 1.9 170 chr2L 6318744 intron Ddr + chr2L 6318829 intron Ddr + chr2L 6318914 intron Ddr + chr2L_9_6315001 chr2L_6315001 RAL-176 120 chr2L 6363150 6363180 chr2L 6366072 6366102 Burdock 10 2918 4.5 7.0 5.8 1.5 2952 chr2L 6363150 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366102 intergenic not near genes chr2L_10_6360001 chr2L_6360001 RAL-176 121 chr2L 6426855 6426886 chr2L 6445115 6445146 roo 16 18260 5.0 5.0 5.0 2.7 18291 chr2L 6426855 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_16_6435001 chr2L_6435001 RAL-176 122 chr2L 6544376 6544386 chr2L 6544468 6544475 9 91 6.0 6.5 6.2 1.2 99 chr2L 6544376 intron eya - chr2L 6544426 intron eya - chr2L 6544475 intron eya - chr2L_9_6540001 chr2L_6540001 RAL-176 123 chr2L 6544392 6544394 chr2L 6544466 6544486 5 87 4.0 5.0 4.5 0.9 94 chr2L 6544392 intron eya - chr2L 6544439 intron eya - chr2L 6544486 intron eya - chr2L_5_6540001 chr2L_6540001 RAL-176 124 chr2L 6564843 6564881 chr2L 6564936 6564972 12 93 2.5 1.0 1.8 4.3 129 chr2L 6564843 3` UTR CG13766 - chr2L 6564908 3` UTR CG13766 - chr2L 6564972 3` UTR CG13766 - chr2L_12_6560001 chr2L_6560001 RAL-176 125 chr2L 6598116 6598138 chr2L 6599073 6599095 14 957 6.0 2.5 4.2 2.7 979 chr2L 6598116 intron CG11319 - chr2L 6598606 intron CG11319 - chr2L 6599095 intron CG11319 - chr2L_14_6595001 chr2L_6595001 RAL-176 126 chr2L 6626904 6626918 chr2L 6626990 6627004 5 87 3.5 6.5 5.0 0.8 100 chr2L 6626904 intron Oatp26F - chr2L 6626954 intron Oatp26F - chr2L 6627004 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-176 127 chr2L 6640906 6640940 chr2L 6641001 6641035 19 93 8.0 3.0 5.5 2.9 129 chr2L 6640906 exon CG31635 - chr2L 6640970 intron CG31635 - chr2L 6641035 intron CG31635 - chr2L_19_6640001 chr2L_6640001 RAL-176 128 chr2L 6715753 6715782 chr2L 6715838 6715867 9 84 0.0 4.0 2.0 3.0 114 chr2L 6715753 intron AkhR - chr2L 6715810 intron AkhR - chr2L 6715867 intron AkhR - chr2L_9_6715001 chr2L_6715001 RAL-176 129 chr2L 6771987 6772022 chr2L 6772071 6772096 19 81 5.5 4.5 5.0 3.2 109 chr2L 6771987 intron CG11321 - chr2L 6772042 intron CG11321 - chr2L 6772096 intron CG11321 - chr2L_19_6770001 chr2L_6770001 RAL-176 130 chr2L 6799535 6799571 chr2L 6799623 6799659 8 88 1.5 3.5 2.5 2.3 124 chr2L 6799535 5` UTR CR43610 + chr2L 6799597 5` UTR CR43610 + chr2L 6799659 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-176 131 chr2L 6876780 6876798 chr2L 6882969 6882986 diver 6 6190 6.0 5.5 5.8 0.9 6206 chr2L 6876780 intron Nlg2 + chr2L 6879883 intron Nlg2 + chr2L 6882986 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-176 132 chr2L 6972229 6972274 chr2L 6972652 6972688 5 419 0.0 8.0 4.0 1.0 459 chr2L 6972229 intergenic snRNP-U1-70K - chr2L 6972458 intergenic uif - chr2L 6972688 intergenic uif - chr2L_5_6970001 chr2L_6970001 RAL-176 133 chr2L 7042062 7042088 chr2L 7042151 7042177 8 89 2.0 4.5 3.2 1.9 115 chr2L 7042062 intron milt + chr2L 7042120 intron milt + chr2L 7042177 intron milt + chr2L_8_7040001 chr2L_7040001 RAL-176 134 chr2L 7111771 7111780 chr2L 7111854 7111864 7 84 1.5 0.0 0.8 3.9 93 chr2L 7111771 intron Pvf3 - chr2L 7111818 intron Pvf3 - chr2L 7111864 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-176 135 chr2L 7129674 7129711 chr2L 7129815 7129851 10 141 2.5 4.0 3.2 2.4 177 chr2L 7129674 intron Pvf3 - chr2L 7129762 intron Pvf3 - chr2L 7129851 intron Pvf3 - chr2L_10_7125001 chr2L_7125001 RAL-176 136 chr2L 7173339 7173364 chr2L 7173439 7173464 17 99 4.0 10.5 7.2 2.1 125 chr2L 7173339 intergenic not near genes chr2L 7173402 intergenic not near genes chr2L 7173464 intergenic not near genes chr2L_17_7170001 chr2L_7170001 RAL-176 137 chr2L 7196768 7196797 chr2L 7196853 7196882 19 85 5.5 4.5 5.0 3.2 114 chr2L 7196768 5` UTR CG4502 - chr2L 7196825 5` UTR CG4502 - chr2L 7196882 intron CG4502 - chr2L_19_7195001 chr2L_7195001 RAL-176 138 chr2L 7244721 7244756 chr2L 7244845 7244874 7 123 2.5 4.5 3.5 1.6 153 chr2L 7244721 intron Ndae1 - chr2L 7244798 intron Ndae1 - chr2L 7244874 intron Ndae1 - chr2L_7_7240001 chr2L_7240001 RAL-176 139 chr2L 7335218 7335230 chr2L 7335315 7335327 4 97 0.5 1.5 1.0 2.0 109 chr2L 7335218 intron Wnt6 + chr2L 7335272 intron Wnt6 + chr2L 7335327 intron Wnt6 + chr2L_4_7335001 chr2L_7335001 RAL-176 140 chr2L 7340043 7340049 chr2L 7340122 7340128 5 78 0.0 12.5 6.2 0.7 85 chr2L 7340043 intron Wnt6 + chr2L 7340086 intron Wnt6 + chr2L 7340128 intron Wnt6 + chr2L_5_7340001 chr2L_7340001 RAL-176 141 chr2L 7343325 7343358 chr2L 7350439 7350473 roo 17 7114 12.5 12.5 12.5 1.3 7148 chr2L 7343325 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350473 intron Wnt6 + chr2L_17_7345001 chr2L_7345001 RAL-176 142 chr2L 7370798 7370813 chr2L 7370903 7370917 5 105 5.0 1.5 3.2 1.2 119 chr2L 7370798 intron Wnt10 + chr2L 7370858 intron Wnt10 + chr2L 7370917 intron Wnt10 + chr2L_5_7370001 chr2L_7370001 RAL-176 143 chr2L 7375803 7375835 chr2L 7375916 7375948 9 113 1.5 4.5 3.0 2.2 145 chr2L 7375803 exon Wnt10 + chr2L 7375876 intron Wnt10 + chr2L 7375948 intron Wnt10 + chr2L_9_7375001 chr2L_7375001 RAL-176 144 chr2L 7502740 7502767 chr2L 7502814 7502834 20 70 6.5 14.0 10.2 1.8 94 chr2L 7502740 intron RapGAP1 - chr2L 7502787 intron RapGAP1 - chr2L 7502834 intron RapGAP1 - chr2L_20_7500001 chr2L_7500001 RAL-176 145 chr2L 7555216 7555234 chr2L 7555293 7555311 7 77 0.5 3.5 2.0 2.3 95 chr2L 7555216 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555311 intron RapGAP1 - chr2L_7_7555001 chr2L_7555001 RAL-176 146 chr2L 7567490 7567515 chr2L 7567566 7567592 16 76 9.0 4.5 6.8 2.1 102 chr2L 7567490 intron RapGAP1 - chr2L 7567541 intron RapGAP1 - chr2L 7567592 intron RapGAP1 - chr2L_16_7565001 chr2L_7565001 RAL-176 147 chr2L 7629156 7629191 chr2L 7629243 7629278 12 87 3.0 6.5 4.8 2.1 122 chr2L 7629156 intergenic not near genes chr2L 7629217 intergenic not near genes chr2L 7629278 intergenic not near genes chr2L_12_7625001 chr2L_7625001 RAL-176 148 chr2L 7650028 7650044 chr2L 7650104 7650120 4 76 2.5 0.0 1.2 1.8 92 chr2L 7650028 intron Slob - chr2L 7650074 intron Slob - chr2L 7650120 intron Slob - chr2L_4_7650001 chr2L_7650001 RAL-176 149 chr2L 7702542 7702569 chr2L 7702634 7702661 7 91 1.5 7.0 4.2 1.3 119 chr2L 7702542 intergenic Tep3 + chr2L 7702602 intergenic Tep3 + chr2L 7702661 intergenic Tep3 + chr2L_7_7700001 chr2L_7700001 RAL-176 150 chr2L 7704705 7704727 chr2L 7704843 7704865 8 138 3.5 4.0 3.8 1.7 160 chr2L 7704705 intron Tep3 + chr2L 7704785 intron Tep3 + chr2L 7704865 intron Tep3 + chr2L_8_7700001 chr2L_7700001 RAL-176 151 chr2L 7748689 7748710 chr2L 7748786 7748807 21 97 9.5 8.5 9.0 2.1 118 chr2L 7748689 intergenic not near genes chr2L 7748748 intergenic not near genes chr2L 7748807 intergenic not near genes chr2L_21_7745001 chr2L_7745001 RAL-176 152 chr2L 7765823 7765830 chr2L 7765913 7765924 4 93 6.0 0.0 3.0 1.0 101 chr2L 7765823 3` UTR CG7196 + chr2L 7765874 3` UTR CG7196 + chr2L 7765924 intergenic CG7196 + chr2L_4_7765001 chr2L_7765001 RAL-176 153 chr2L 7768849 7768879 chr2L 7768925 7768955 8 76 0.0 3.0 1.5 3.2 106 chr2L 7768849 intron CG7191 + chr2L 7768902 intron CG7191 + chr2L 7768955 intron CG7191 + chr2L_8_7765001 chr2L_7765001 RAL-176 154 chr2L 7867575 7867599 chr2L 7867669 7867693 7 94 2.0 2.0 2.0 2.3 118 chr2L 7867575 intron Proc - chr2L 7867634 intron Proc - chr2L 7867693 intron Proc - chr2L_7_7865001 chr2L_7865001 RAL-176 155 chr2L 7922741 7922774 chr2L 7922822 7922855 15 80 9.0 4.0 6.5 2.0 114 chr2L 7922741 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922855 intron Snoo - chr2L_15_7920001 chr2L_7920001 RAL-176 156 chr2L 7959040 7959061 chr2L 7960451 7960472 pogo 9 1411 5.0 0.0 2.5 2.6 1432 chr2L 7959040 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960472 intron Snoo - chr2L_9_7955001 chr2L_7955001 RAL-176 157 chr2L 7977090 7977111 chr2L 7984066 7984087 297 9 6974 7.5 6.0 6.8 1.2 6997 chr2L 7977090 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984087 intron,5` UTR Snoo -,CG7231 + chr2L_9_7980001 chr2L_7980001 RAL-176 158 chr2L 8013611 8013627 chr2L 8018815 8018831 copia 9 5204 3.0 0.0 1.5 3.6 5220 chr2L 8013611 intron Tg + chr2L 8016221 intron Tg + chr2L 8018831 intron Tg + chr2L_9_8015001 chr2L_8015001 RAL-176 159 chr2L 8044095 8044130 chr2L 8044174 8044209 31 77 9.5 10.5 10.0 2.8 114 chr2L 8044095 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044209 intron CG7466 + chr2L_31_8040001 chr2L_8040001 RAL-176 160 chr2L 8241035 8241051 chr2L 8241677 8241693 5 641 5.5 8.0 6.8 0.6 658 chr2L 8241035 exon Spn28F - chr2L 8241364 exon Spn28F - chr2L 8241693 exon Spn28F - chr2L_5_8240001 chr2L_8240001 RAL-176 161 chr2L 8244739 8244749 chr2L 8244859 8244871 8 121 1.5 5.0 3.2 1.9 132 chr2L 8244739 intron CG8086 - chr2L 8244805 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_8_8240001 chr2L_8240001 RAL-176 162 chr2L 8277864 8277869 chr2L 8277944 8277949 7 80 0.5 2.0 1.2 3.2 85 chr2L 8277864 intron Btk29A - chr2L 8277906 intron Btk29A - chr2L 8277949 intron Btk29A - chr2L_7_8275001 chr2L_8275001 RAL-176 163 chr2L 8452421 8452451 chr2L 8461591 8461621 roo 5 9170 1.0 1.0 1.0 2.5 9200 chr2L 8452421 intron fu12 - chr2L 8457021 intron fu12 - chr2L 8461621 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-176 164 chr2L 8462114 8462144 chr2L 8464821 8464850 19 2709 44.5 53.5 49.0 0.4 2736 chr2L 8462114 intron fu12 - chr2L 8463482 intron fu12 - chr2L 8464850 exon fu2 + chr2L_19_8460001 chr2L_8460001 RAL-176 165 chr2L 8580193 8580225 chr2L 8580274 8580304 11 81 3.5 2.5 3.0 2.8 111 chr2L 8580193 intron Sema-1a + chr2L 8580248 intron Sema-1a + chr2L 8580304 intron Sema-1a + chr2L_11_8580001 chr2L_8580001 RAL-176 166 chr2L 8588903 8588922 chr2L 8588994 8589012 5 91 3.5 3.5 3.5 1.1 109 chr2L 8588903 intron Sema-1a + chr2L 8588958 intron Sema-1a + chr2L 8589012 intron Sema-1a + chr2L_5_8585001 chr2L_8585001 RAL-176 167 chr2L 8594465 8594497 chr2L 8601519 8601551 297 4 7054 2.5 3.5 3.0 1.0 7086 chr2L 8594465 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601551 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-176 168 chr2L 8612854 8612868 chr2L 8612931 8612945 6 76 3.0 4.0 3.5 1.3 91 chr2L 8612854 intron Sema-1a + chr2L 8612900 intron Sema-1a + chr2L 8612945 intron Sema-1a + chr2L_6_8610001 chr2L_8610001 RAL-176 169 chr2L 8723113 8723147 chr2L 8731490 8731524 Tirant 20 8376 1.5 5.0 3.2 4.8 8411 chr2L 8723113 intron raw - chr2L 8727318 intron raw - chr2L 8731524 intron raw - chr2L_20_8725001 chr2L_8725001 RAL-176 170 chr2L 8810777 8810802 chr2L 8810870 8810892 9 92 2.5 10.0 6.2 1.2 115 chr2L 8810777 intergenic not near genes chr2L 8810834 intergenic not near genes chr2L 8810892 intergenic not near genes chr2L_9_8810001 chr2L_8810001 RAL-176 171 chr2L 8852648 8852669 chr2L 8852716 8852753 6 80 0.0 6.5 3.2 1.4 105 chr2L 8852648 3` UTR CR45365 - chr2L 8852700 intergenic CR45365 - chr2L 8852753 intergenic CR45365 - chr2L_6_8850001 chr2L_8850001 RAL-176 172 chr2L 9000281 9000310 chr2L 9007791 9007819 roo 5 7509 3.5 2.5 3.0 1.2 7538 chr2L 9000281 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-176 173 chr2L 9040030 9040058 chr2L 9040116 9040145 9 87 1.5 0.0 0.8 5.0 115 chr2L 9040030 intergenic not near genes chr2L 9040088 intergenic not near genes chr2L 9040145 intergenic not near genes chr2L_9_9040001 chr2L_9040001 RAL-176 174 chr2L 9044106 9044130 chr2L 9044204 9044237 6 104 0.0 5.0 2.5 1.7 131 chr2L 9044106 intergenic not near genes chr2L 9044172 intergenic not near genes chr2L 9044237 intergenic not near genes chr2L_6_9040001 chr2L_9040001 RAL-176 175 chr2L 9084336 9084338 chr2L 16217660 16217660 13 7133323 27.0 34.0 30.5 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-176 176 chr2L 9084339 9084339 chr2L 16217660 16217660 14 7133321 26.5 34.0 30.2 0.4 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-176 177 chr2L 9084340 9084340 chr2L 16217660 16217660 11 7133320 26.5 34.0 30.2 0.4 7133320 chr2L 9084340 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_12650001 chr2L_12650001 RAL-176 178 chr2L 9105749 9105778 chr2L 9105900 9105929 14 150 8.0 2.0 5.0 2.3 180 chr2L 9105749 intergenic not near genes chr2L 9105839 intergenic not near genes chr2L 9105929 intergenic not near genes chr2L_14_9105001 chr2L_9105001 RAL-176 179 chr2L 9108300 9108333 chr2L 9108383 9108415 17 82 5.0 6.0 5.5 2.6 115 chr2L 9108300 intergenic not near genes chr2L 9108358 intergenic not near genes chr2L 9108415 intergenic not near genes chr2L_17_9105001 chr2L_9105001 RAL-176 180 chr2L 9202056 9202088 chr2L 9202131 9202164 16 73 5.0 9.0 7.0 2.0 108 chr2L 9202056 intron tai + chr2L 9202110 intron tai + chr2L 9202164 intron tai + chr2L_16_9200001 chr2L_9200001 RAL-176 181 chr2L 9217973 9217996 chr2L 9222760 9222781 Doc 10 4786 5.5 4.5 5.0 1.7 4808 chr2L 9217973 intron tai + chr2L 9220377 intron tai + chr2L 9222781 intron tai + chr2L_10_9220001 chr2L_9220001 RAL-176 182 chr2L 9225419 9225430 chr2L 9225498 9225510 4 79 4.0 10.0 7.0 0.5 91 chr2L 9225419 intron tai + chr2L 9225464 intron tai + chr2L 9225510 intron tai + chr2L_4_9225001 chr2L_9225001 RAL-176 183 chr2L 9264343 9264383 chr2L 9264443 9264483 11 100 2.0 1.0 1.5 4.4 140 chr2L 9264343 intron Ggamma30A + chr2L 9264413 intron Ggamma30A + chr2L 9264483 intron Ggamma30A + chr2L_11_9260001 chr2L_9260001 RAL-176 184 chr2L 9285034 9285046 chr2L 9285100 9285122 8 70 6.5 6.5 6.5 1.1 88 chr2L 9285034 intron Ggamma30A + chr2L 9285078 intron Ggamma30A + chr2L 9285122 intron Ggamma30A + chr2L_8_9285001 chr2L_9285001 RAL-176 185 chr2L 9287332 9287355 chr2L 9287426 9287452 6 96 2.0 7.0 4.5 1.1 120 chr2L 9287332 intron Ggamma30A + chr2L 9287392 intron Ggamma30A + chr2L 9287452 intron Ggamma30A + chr2L_6_9285001 chr2L_9285001 RAL-176 186 chr2L 9393496 9393529 chr2L 9396463 9396494 jockey 16 2966 4.5 7.5 6.0 2.3 2998 chr2L 9393496 intron Shawl - chr2L 9394995 intron Shawl - chr2L 9396494 intron Shawl - chr2L_16_9390001 chr2L_9390001 RAL-176 187 chr2L 9412655 9412683 chr2L 9412799 9412826 6 144 1.5 2.0 1.8 2.1 171 chr2L 9412655 intron Shawl - chr2L 9412740 intron Shawl - chr2L 9412826 intron Shawl - chr2L_6_9410001 chr2L_9410001 RAL-176 188 chr2L 9457071 9457103 chr2L 9457148 9457180 16 77 5.5 6.0 5.8 2.4 109 chr2L 9457071 intron numb + chr2L 9457126 intron numb + chr2L 9457180 intron numb + chr2L_16_9455001 chr2L_9455001 RAL-176 189 chr2L 9460755 9460768 chr2L 9460841 9460854 9 86 14.0 0.0 7.0 1.1 99 chr2L 9460755 intron numb + chr2L 9460804 intron numb + chr2L 9460854 intron numb + chr2L_9_9460001 chr2L_9460001 RAL-176 190 chr2L 9797269 9797278 chr2L 9797356 9797365 6 86 1.5 9.5 5.5 0.9 96 chr2L 9797269 intron nAChRalpha6 - chr2L 9797317 intron nAChRalpha6 - chr2L 9797365 intron nAChRalpha6 - chr2L_6_9795001 chr2L_9795001 RAL-176 191 chr2L 9843203 9843229 chr2L 9843284 9843310 10 81 0.0 0.0 0.0 10.0 107 chr2L 9843203 intron nAChRalpha6 - chr2L 9843256 intron nAChRalpha6 - chr2L 9843310 intron nAChRalpha6 - chr2L_10_9840001 chr2L_9840001 RAL-176 192 chr2L 9892503 9892535 chr2L 9892579 9892611 18 76 2.0 6.5 4.2 3.5 108 chr2L 9892503 intron mtDNA-helicase - chr2L 9892557 intron mtDNA-helicase - chr2L 9892611 intron mtDNA-helicase - chr2L_18_9890001 chr2L_9890001 RAL-176 193 chr2L 9943366 9943381 chr2L 9943446 9943461 4 80 0.5 2.5 1.5 1.6 95 chr2L 9943366 intron CG5853 - chr2L 9943414 intron CG5853 - chr2L 9943461 intron CG5853 - chr2L_4_9940001 chr2L_9940001 RAL-176 194 chr2L 9973725 9973759 chr2L 9980844 9980878 HMS-Beagle 24 7116 7.0 7.0 7.0 3.0 7153 chr2L 9973725 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_24_9975001 chr2L_9975001 RAL-176 195 chr2L 9986350 9986382 chr2L 9986444 9986477 21 92 8.5 7.0 7.8 2.4 127 chr2L 9986350 intron bib + chr2L 9986414 intron bib + chr2L 9986477 intron bib + chr2L_21_9985001 chr2L_9985001 RAL-176 196 chr2L 10009559 10009587 chr2L 10009707 10009738 10 150 4.0 4.0 4.0 2.0 179 chr2L 10009559 intron Trp1 + chr2L 10009648 intron Trp1 + chr2L 10009738 intron Trp1 + chr2L_10_10005001 chr2L_10005001 RAL-176 197 chr2L 10051724 10051753 chr2L 10051809 10051838 23 82 10.5 5.5 8.0 2.6 114 chr2L 10051724 5` UTR CR44874 + chr2L 10051781 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_23_10050001 chr2L_10050001 RAL-176 198 chr2L 10078122 10078155 chr2L 10078280 10078312 25 156 5.0 2.0 3.5 5.6 190 chr2L 10078122 intron CG44153 - chr2L 10078217 intron CG44153 - chr2L 10078312 intron CG44153 - chr2L_25_10075001 chr2L_10075001 RAL-176 199 chr2L 10105282 10105315 chr2L 10105357 10105391 18 72 4.0 6.0 5.0 3.0 109 chr2L 10105282 intron,intron CG44153 -,CG34109 + chr2L 10105336 intron,intron CG44153 -,CG34109 + chr2L 10105391 intron,intron CG44153 -,CG34109 + chr2L_18_10105001 chr2L_10105001 RAL-176 200 chr2L 10129169 10129204 chr2L 10129263 10129297 7 93 0.5 0.5 0.5 4.7 128 chr2L 10129169 intron CG44153 - chr2L 10129233 intron CG44153 - chr2L 10129297 intron CG44153 - chr2L_7_10125001 chr2L_10125001 RAL-176 201 chr2L 10153200 10153238 chr2L 10153279 10153317 31 78 3.5 8.5 6.0 4.4 117 chr2L 10153200 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153317 intron,intron CG44153 -,CG4839 + chr2L_31_10150001 chr2L_10150001 RAL-176 202 chr2L 10156321 10156355 chr2L 10163791 10163815 blood 18 7468 3.5 3.5 3.5 4.0 7494 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163815 intron CG44153 - chr2L_18_10160001 chr2L_10160001 RAL-176 203 chr2L 10278012 10278039 chr2L 10278092 10278118 5 78 0.5 1.0 0.8 2.8 106 chr2L 10278012 intron Utx - chr2L 10278065 intron Utx - chr2L 10278118 intron Utx - chr2L_5_10275001 chr2L_10275001 RAL-176 204 chr2L 10474383 10474402 chr2L 10474464 10474482 12 78 5.5 2.0 3.8 2.5 99 chr2L 10474383 intergenic RluA-1 - chr2L 10474432 intergenic RluA-1 - chr2L 10474482 intergenic RluA-1 - chr2L_12_10470001 chr2L_10470001 RAL-176 205 chr2L 10563912 10563948 chr2L 10564005 10564041 10 92 4.5 4.0 4.2 1.9 129 chr2L 10563912 intron Trim9 + chr2L 10563976 intron Trim9 + chr2L 10564041 intron Trim9 + chr2L_10_10560001 chr2L_10560001 RAL-176 206 chr2L 10572700 10572731 chr2L 10572781 10572812 14 81 5.0 4.5 4.8 2.4 112 chr2L 10572700 intron Trim9 + chr2L 10572756 intron Trim9 + chr2L 10572812 intron Trim9 + chr2L_14_10570001 chr2L_10570001 RAL-176 207 chr2L 10580792 10580818 chr2L 10580873 10580899 14 79 3.0 3.0 3.0 3.5 107 chr2L 10580792 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580899 intron Trim9 + chr2L_14_10580001 chr2L_10580001 RAL-176 208 chr2L 10633351 10633385 chr2L 10633437 10633472 7 86 0.5 4.0 2.2 2.2 121 chr2L 10633351 intron CG7329 - chr2L 10633412 intron CG7329 - chr2L 10633472 intron CG7329 - chr2L_7_10630001 chr2L_10630001 RAL-176 209 chr2L 10634763 10634780 chr2L 10634843 10634860 5 80 2.0 1.5 1.8 1.8 97 chr2L 10634763 intron CG7329 - chr2L 10634812 intron CG7329 - chr2L 10634860 intron CG7329 - chr2L_5_10630001 chr2L_10630001 RAL-176 210 chr2L 10640639 10640671 chr2L 10640728 10640760 21 89 9.0 4.5 6.8 2.7 121 chr2L 10640639 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_21_10640001 chr2L_10640001 RAL-176 211 chr2L 10701712 10701742 chr2L 10701790 10701822 22 79 4.0 13.0 8.5 2.3 110 chr2L 10701712 intergenic Lip1 -,Lip2 - chr2L 10701767 intergenic Lip2 -,Lip1 - chr2L 10701822 intergenic Lip2 -,Lip1 - chr2L_22_10700001 chr2L_10700001 RAL-176 212 chr2L 10793317 10793342 chr2L 10793394 10793419 10 77 0.0 2.0 1.0 5.0 102 chr2L 10793317 intron CG31869 - chr2L 10793368 intron CG31869 - chr2L 10793419 intron CG31869 - chr2L_10_10790001 chr2L_10790001 RAL-176 213 chr2L 10813677 10813707 chr2L 10813829 10813859 11 151 1.0 5.0 3.0 2.8 182 chr2L 10813677 intron Nos - chr2L 10813768 intron Nos - chr2L 10813859 intron Nos - chr2L_11_10810001 chr2L_10810001 RAL-176 214 chr2L 10836330 10836364 chr2L 10836411 10836444 10 81 4.5 5.0 4.8 1.7 114 chr2L 10836330 intron Nos - chr2L 10836387 intron Nos - chr2L 10836444 intron Nos - chr2L_10_10835001 chr2L_10835001 RAL-176 215 chr2L 10862849 10862878 chr2L 10864459 10864478 Rt1c 19 1609 10.5 12.5 11.5 1.5 1629 chr2L 10862849 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864478 3` UTR CR43807 - chr2L_19_10860001 chr2L_10860001 RAL-176 216 chr2L 10891454 10891488 chr2L 10891648 10891682 7 194 1.0 2.0 1.5 2.8 228 chr2L 10891454 intergenic not near genes chr2L 10891568 intergenic not near genes chr2L 10891682 intergenic not near genes chr2L_7_10890001 chr2L_10890001 RAL-176 217 chr2L 10946951 10946977 chr2L 10956166 10956191 roo 9 9214 5.0 11.0 8.0 1.0 9240 chr2L 10946951 intron dpr2 - chr2L 10951571 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-176 218 chr2L 11150082 11150107 chr2L 11150153 11150184 17 73 4.0 4.5 4.2 3.3 102 chr2L 11150082 intergenic not near genes chr2L 11150133 intergenic not near genes chr2L 11150184 intergenic not near genes chr2L_17_11150001 chr2L_11150001 RAL-176 219 chr2L 11248569 11248589 chr2L 11248652 11248671 9 80 15.5 5.0 10.2 0.8 102 chr2L 11248569 intron ab + chr2L 11248620 intron ab + chr2L 11248671 intron ab + chr2L_9_11245001 chr2L_11245001 RAL-176 220 chr2L 11339735 11339741 chr2L 11339812 11339818 5 77 6.0 1.5 3.8 1.0 83 chr2L 11339735 intergenic not near genes chr2L 11339776 intergenic not near genes chr2L 11339818 intergenic not near genes chr2L_5_11335001 chr2L_11335001 RAL-176 221 chr2L 11491128 11491155 chr2L 11491208 11491233 10 79 1.0 2.5 1.8 3.6 105 chr2L 11491128 intergenic not near genes chr2L 11491180 intergenic not near genes chr2L 11491233 intergenic not near genes chr2L_10_11490001 chr2L_11490001 RAL-176 222 chr2L 11563639 11563655 chr2L 11568843 11568859 copia 5 5204 6.0 1.5 3.8 1.0 5220 chr2L 11563639 intergenic not near genes chr2L 11566249 intergenic not near genes chr2L 11568859 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-176 223 chr2L 11614053 11614086 chr2L 11615547 11615553 hopper2 4 1482 4.5 4.0 4.2 0.8 1500 chr2L 11614053 intron kek2 + chr2L 11614803 intron kek2 + chr2L 11615553 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-176 224 chr2L 11642277 11642306 chr2L 11642360 11642389 11 82 1.5 5.0 3.2 2.6 112 chr2L 11642277 intergenic not near genes chr2L 11642333 intergenic not near genes chr2L 11642389 intergenic not near genes chr2L_11_11640001 chr2L_11640001 RAL-176 225 chr2L 11661191 11661211 chr2L 11661278 11661298 5 87 3.0 6.0 4.5 0.9 107 chr2L 11661191 intergenic CR44497 -,CR44479 - chr2L 11661244 intergenic CR44497 -,CR44479 - chr2L 11661298 intergenic CR44497 -,CR44479 - chr2L_5_11660001 chr2L_11660001 RAL-176 226 chr2L 11665833 11665863 chr2L 11665912 11665940 4 78 0.0 7.0 3.5 0.9 107 chr2L 11665833 intergenic CR44481 + chr2L 11665886 intergenic CR44481 + chr2L 11665940 intergenic CR44481 + chr2L_4_11665001 chr2L_11665001 RAL-176 227 chr2L 11713508 11713537 chr2L 11720973 11721005 blood 11 7468 7.5 2.0 4.8 1.9 7497 chr2L 11713508 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_11_11715001 chr2L_11715001 RAL-176 228 chr2L 11740071 11740084 chr2L 11740165 11740177 4 94 0.5 0.5 0.5 2.7 106 chr2L 11740071 intron Vha100-5 + chr2L 11740124 intron Vha100-5 + chr2L 11740177 intron Vha100-5 + chr2L_4_11740001 chr2L_11740001 RAL-176 229 chr2L 11750377 11750410 chr2L 11750798 11750831 11 420 1.5 1.0 1.2 5.0 454 chr2L 11750377 intergenic not near genes chr2L 11750604 intergenic not near genes chr2L 11750831 intergenic not near genes chr2L_11_11750001 chr2L_11750001 RAL-176 230 chr2L 11752874 11752880 chr2L 11753159 11753164 4 284 7.0 5.5 6.2 0.6 290 chr2L 11752874 intergenic CG42470 - chr2L 11753019 3` UTR CG42470 - chr2L 11753164 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-176 231 chr2L 11752881 11752891 chr2L 11753156 11753181 6 282 6.0 5.5 5.8 0.9 300 chr2L 11752881 intergenic CG42470 - chr2L 11753031 3` UTR CG42470 - chr2L 11753181 3` UTR CG42470 - chr2L_6_11750001 chr2L_11750001 RAL-176 232 chr2L 11762626 11762631 chr2L 11762713 11762718 4 86 7.0 6.0 6.5 0.5 92 chr2L 11762626 intergenic not near genes chr2L 11762672 intergenic not near genes chr2L 11762718 intergenic not near genes chr2L_4_11760001 chr2L_11760001 RAL-176 233 chr2L 11762632 11762652 chr2L 11762712 11762739 16 86 5.5 5.5 5.5 2.5 107 chr2L 11762632 intergenic not near genes chr2L 11762686 intergenic not near genes chr2L 11762739 intergenic not near genes chr2L_16_11760001 chr2L_11760001 RAL-176 234 chr2L 11820430 11820467 chr2L 11820511 11820548 17 81 4.5 4.0 4.2 3.3 118 chr2L 11820430 intron Pde1c - chr2L 11820489 intron Pde1c - chr2L 11820548 intron Pde1c - chr2L_17_11820001 chr2L_11820001 RAL-176 235 chr2L 11840013 11840036 chr2L 11840105 11840128 13 92 7.0 7.5 7.2 1.6 115 chr2L 11840013 intron,exon Pde1c -,Sfp33A3 + chr2L 11840070 intron,exon Pde1c -,Sfp33A3 + chr2L 11840128 intron,exon Pde1c -,Sfp33A3 + chr2L_13_11840001 chr2L_11840001 RAL-176 236 chr2L 12272163 12272186 chr2L 12272239 12272262 5 76 1.5 0.5 1.0 2.5 99 chr2L 12272163 intron aret + chr2L 12272212 intron aret + chr2L 12272262 intron aret + chr2L_5_12270001 chr2L_12270001 RAL-176 237 chr2L 12287801 12287825 chr2L 12287877 12287901 5 76 0.0 2.0 1.0 2.5 100 chr2L 12287801 intron aret + chr2L 12287851 intron aret + chr2L 12287901 intron aret + chr2L_5_12285001 chr2L_12285001 RAL-176 238 chr2L 12339729 12339757 chr2L 12339862 12339890 6 133 0.0 3.5 1.8 2.1 161 chr2L 12339729 intergenic CG31862 + chr2L 12339810 intergenic CG31862 + chr2L 12339890 intergenic CG31862 + chr2L_6_12335001 chr2L_12335001 RAL-176 239 chr2L 12349631 12349664 chr2L 12349725 12349757 33 94 8.0 3.5 5.8 4.9 126 chr2L 12349631 intron bru-2 + chr2L 12349694 intron bru-2 + chr2L 12349757 intron bru-2 + chr2L_33_12345001 chr2L_12345001 RAL-176 240 chr2L 12396051 12396065 chr2L 12396145 12396159 11 93 5.0 0.0 2.5 3.1 108 chr2L 12396051 intron bru-2 + chr2L 12396105 intron bru-2 + chr2L 12396159 intron bru-2 + chr2L_11_12395001 chr2L_12395001 RAL-176 241 chr2L 12487885 12487917 chr2L 12487966 12487997 12 81 6.5 2.5 4.5 2.2 112 chr2L 12487885 intron bun - chr2L 12487941 intron bun - chr2L 12487997 intron bun - chr2L_12_12485001 chr2L_12485001 RAL-176 242 chr2L 12490090 12490108 chr2L 12490229 12490247 4 139 0.5 0.5 0.5 2.7 157 chr2L 12490090 intron bun - chr2L 12490168 intron bun - chr2L 12490247 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-176 243 chr2L 12510133 12510137 chr2L 12510210 12510214 5 77 7.0 18.5 12.8 0.4 81 chr2L 12510133 intron bun - chr2L 12510174 intron bun - chr2L 12510214 intron bun - chr2L_5_12510001 chr2L_12510001 RAL-176 244 chr2L 12529232 12529265 chr2L 12529384 12529417 11 152 1.0 2.0 1.5 4.4 185 chr2L 12529232 intron bun - chr2L 12529324 intron bun - chr2L 12529417 intron bun - chr2L_11_12525001 chr2L_12525001 RAL-176 245 chr2L 12625155 12625191 chr2L 12625248 12625253 28 91 4.5 11.5 8.0 3.1 98 chr2L 12625155 intron,intron nub +,Ref2 - chr2L 12625204 intron,intron nub +,Ref2 - chr2L 12625253 intron,intron nub +,Ref2 - chr2L_28_12625001 chr2L_12625001 RAL-176 246 chr2L 12643180 12643185 chr2L 12643257 12643262 4 76 0.5 0.0 0.2 3.3 82 chr2L 12643180 intron Ref2 - chr2L 12643221 intron Ref2 - chr2L 12643262 intron Ref2 - chr2L_4_12640001 chr2L_12640001 RAL-176 247 chr2L 12728929 12728945 chr2L 12729170 12729186 pogo 6 241 2.5 7.0 4.8 1.0 257 chr2L 12728929 intron MRP + chr2L 12729058 intron MRP + chr2L 12729186 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-176 248 chr2L 12731066 12731091 chr2L 12735833 12735857 F-element 9 4767 3.5 2.5 3.0 2.2 4791 chr2L 12731066 intron MRP + chr2L 12733462 intron MRP + chr2L 12735857 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-176 249 chr2L 12739172 12739205 chr2L 12743953 12743986 Doc 16 4781 3.0 4.0 3.5 3.6 4814 chr2L 12739172 exon MRP + chr2L 12741579 intron MRP + chr2L 12743986 exon MRP + chr2L_16_12740001 chr2L_12740001 RAL-176 250 chr2L 12749969 12749996 chr2L 12750408 12750435 15 438 7.0 7.0 7.0 1.9 466 chr2L 12749969 intergenic not near genes chr2L 12750202 intergenic not near genes chr2L 12750435 intergenic not near genes chr2L_15_12750001 chr2L_12750001 RAL-176 251 chr2L 12751311 12751340 chr2L 12751394 12751420 17 83 4.5 5.5 5.0 2.8 109 chr2L 12751311 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_17_12750001 chr2L_12750001 RAL-176 252 chr2L 12759206 12759237 chr2L 12759301 12759332 26 94 2.5 6.0 4.2 5.0 126 chr2L 12759206 intergenic not near genes chr2L 12759269 intergenic not near genes chr2L 12759332 intergenic not near genes chr2L_26_12755001 chr2L_12755001 RAL-176 253 chr2L 12781796 12781812 chr2L 12789246 12789260 Quasimodo 5 7450 6.0 3.5 4.8 0.9 7464 chr2L 12781796 intergenic not near genes chr2L 12785528 intergenic not near genes chr2L 12789260 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-176 254 chr2L 2707210 2707213 chr2L 12803845 12803848 5 10096635 18.5 5.5 12.0 0.4 10096638 chr2L 2707210 intron CG31690 + chr2L 7755529 intron CG7196 + chr2L 12803848 intergenic not near genes chr2L_5_7755001 chr2L_7755001 RAL-176 255 chr2L 12861694 12861730 chr2L 12863161 12863196 hobo 16 1464 5.0 4.0 4.5 2.9 1502 chr2L 12861694 intergenic not near genes chr2L 12862445 intergenic not near genes chr2L 12863196 intergenic not near genes chr2L_16_12860001 chr2L_12860001 RAL-176 256 chr2L 12870273 12870309 chr2L 12870575 12870608 10 302 3.0 2.5 2.8 2.6 335 chr2L 12870273 intergenic not near genes chr2L 12870440 intergenic not near genes chr2L 12870608 intergenic not near genes chr2L_10_12870001 chr2L_12870001 RAL-176 257 chr2L 12933848 12933883 chr2L 12941315 12941350 blood 13 7466 5.5 4.5 5.0 2.2 7502 chr2L 12933848 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_13_12935001 chr2L_12935001 RAL-176 258 chr2L 13033836 13033867 chr2L 13033924 13033955 8 87 4.0 4.5 4.2 1.5 119 chr2L 13033836 intron CG9932 - chr2L 13033896 intron CG9932 - chr2L 13033955 intron CG9932 - chr2L_8_13030001 chr2L_13030001 RAL-176 259 chr2L 13036250 13036275 chr2L 13036491 13036517 X-element 6 242 4.5 0.0 2.2 1.9 267 chr2L 13036250 intron CG9932 - chr2L 13036384 intron CG9932 - chr2L 13036517 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-176 260 chr2L 13043407 13043436 chr2L 13043485 13043514 14 78 3.0 2.5 2.8 3.7 107 chr2L 13043407 intron CG9932 - chr2L 13043460 intron CG9932 - chr2L 13043514 intron CG9932 - chr2L_14_13040001 chr2L_13040001 RAL-176 261 chr2L 13139469 13139488 chr2L 13139550 13139564 15 83 4.0 6.5 5.2 2.4 95 chr2L 13139469 intergenic not near genes chr2L 13139516 intergenic not near genes chr2L 13139564 intergenic not near genes chr2L_15_13135001 chr2L_13135001 RAL-176 262 chr2L 13204317 13204346 chr2L 13204416 13204419 8 92 9.5 7.5 8.5 0.8 102 chr2L 13204317 intron Pect + chr2L 13204368 intron Pect + chr2L 13204419 intron Pect + chr2L_8_13200001 chr2L_13200001 RAL-176 263 chr2L 13266377 13266412 chr2L 13266465 13266500 19 87 4.5 5.0 4.8 3.3 123 chr2L 13266377 intron CG44085 + chr2L 13266438 intron CG44085 + chr2L 13266500 intron CG44085 + chr2L_19_13265001 chr2L_13265001 RAL-176 264 chr2L 13328543 13328580 chr2L 13328908 13328945 12 364 5.0 1.5 3.2 2.9 402 chr2L 13328543 intron CG43778 - chr2L 13328744 intron CG43778 - chr2L 13328945 intron CG43778 - chr2L_12_13325001 chr2L_13325001 RAL-176 265 chr2L 13405649 13405683 chr2L 13410444 13410480 Doc 27 4796 6.0 8.0 7.0 3.4 4831 chr2L 13405649 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410480 intron CG7110 + chr2L_27_13405001 chr2L_13405001 RAL-176 266 chr2L 13449460 13449493 chr2L 13456896 13456929 Quasimodo 7 7436 1.5 5.5 3.5 1.6 7469 chr2L 13449460 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456929 intron CG42784 + chr2L_7_13450001 chr2L_13450001 RAL-176 267 chr2L 13481449 13481477 chr2L 13482056 13482084 jockey 15 606 5.5 11.5 8.5 1.6 635 chr2L 13481449 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482084 intron CG42784 + chr2L_15_13480001 chr2L_13480001 RAL-176 268 chr2L 13695810 13695842 chr2L 13695920 13695952 23 110 13.0 5.5 9.2 2.3 142 chr2L 13695810 intron CG31814 - chr2L 13695881 intron CG31814 - chr2L 13695952 intron CG31814 - chr2L_23_13695001 chr2L_13695001 RAL-176 269 chr2L 13713287 13713558 chr2L 13713397 13713634 5 90 1.5 2.5 2.0 1.7 347 chr2L 13713287 intron CG31814 - chr2L 13713460 intron CG31814 - chr2L 13713634 intron CG31814 - chr2L_5_13710001 chr2L_13710001 RAL-176 270 chr2L 13720564 13720591 chr2L 13720639 13720664 5 75 0.5 1.5 1.0 2.5 100 chr2L 13720564 intergenic not near genes chr2L 13720614 intergenic not near genes chr2L 13720664 intergenic not near genes chr2L_5_13720001 chr2L_13720001 RAL-176 271 chr2L 13736973 13737004 chr2L 13737069 13737100 10 96 0.5 8.0 4.2 1.9 127 chr2L 13736973 3` UTR CG31813 + chr2L 13737036 intergenic CG31813 + chr2L 13737100 intergenic CG31813 + chr2L_10_13735001 chr2L_13735001 RAL-176 272 chr2L 13761807 13761814 chr2L 13762917 13762923 Doc 4 1110 9.5 5.0 7.2 0.5 1116 chr2L 13761807 intron TM9SF4 + chr2L 13762365 intron TM9SF4 + chr2L 13762923 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-176 273 chr2L 13761822 13761837 chr2L 13762911 13762933 Doc 7 1103 5.0 4.5 4.8 1.2 1111 chr2L 13761822 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762933 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-176 274 chr2L 13853094 13853118 chr2L 13862244 13862268 roo 9 9150 1.0 1.5 1.2 4.1 9174 chr2L 13853094 intron CenG1A + chr2L 13857681 intron CenG1A + chr2L 13862268 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-176 275 chr2L 13875847 13875856 chr2L 13875930 13875939 5 83 7.0 0.0 3.5 1.1 92 chr2L 13875847 intron CenG1A + chr2L 13875893 intron CenG1A + chr2L 13875939 intron CenG1A + chr2L_5_13875001 chr2L_13875001 RAL-176 276 chr2L 14109515 14109542 chr2L 14109606 14109633 8 91 2.0 0.5 1.2 3.6 118 chr2L 14109515 intergenic CG15293 -,CG31769 - chr2L 14109574 intergenic CG31769 -,CG15293 - chr2L 14109633 3` UTR CG31769 - chr2L_8_14105001 chr2L_14105001 RAL-176 277 chr2L 14118667 14118689 chr2L 14118766 14118788 13 99 6.0 3.5 4.8 2.2 121 chr2L 14118667 intergenic not near genes chr2L 14118728 intergenic not near genes chr2L 14118788 intergenic not near genes chr2L_13_14115001 chr2L_14115001 RAL-176 278 chr2L 14151591 14151618 chr2L 14151669 14151696 7 78 3.0 4.0 3.5 1.6 105 chr2L 14151591 intron CG17341 + chr2L 14151644 intron CG17341 + chr2L 14151696 intron CG17341 + chr2L_7_14150001 chr2L_14150001 RAL-176 279 chr2L 14236242 14236245 chr2L 14236339 14236342 5 97 5.5 0.0 2.8 1.3 100 chr2L 14236242 5` UTR CR44728 + chr2L 14236292 5` UTR CR44728 + chr2L 14236342 intergenic CR44728 + chr2L_5_14235001 chr2L_14235001 RAL-176 280 chr2L 14358380 14358394 chr2L 14358474 14358488 4 94 0.0 7.0 3.5 0.9 108 chr2L 14358380 intergenic Rab14 + chr2L 14358434 intergenic Rab14 + chr2L 14358488 intergenic Rab14 + chr2L_4_14355001 chr2L_14355001 RAL-176 281 chr2L 14374779 14374794 chr2L 14374870 14374878 5 90 0.0 1.0 0.5 3.3 99 chr2L 14374779 intergenic not near genes chr2L 14374828 intergenic not near genes chr2L 14374878 intergenic not near genes chr2L_5_14370001 chr2L_14370001 RAL-176 282 chr2L 14378649 14378680 chr2L 14378728 14378759 7 79 2.0 0.5 1.2 3.2 110 chr2L 14378649 3` UTR ppk - chr2L 14378704 3` UTR ppk - chr2L 14378759 3` UTR ppk - chr2L_7_14375001 chr2L_14375001 RAL-176 283 chr2L 14396200 14396224 chr2L 14398956 14398980 4 2756 17.0 11.5 14.2 0.3 2780 chr2L 14396200 intron elB - chr2L 14397590 intron elB - chr2L 14398980 intron elB - chr2L_4_14395001 chr2L_14395001 RAL-176 284 chr2L 14396036 14396058 chr2L 14399145 14399167 9 3109 23.0 12.5 17.8 0.5 3131 chr2L 14396036 intron elB - chr2L 14397602 intron elB - chr2L 14399167 intron elB - chr2L_9_14395001 chr2L_14395001 RAL-176 285 chr2L 14524618 14524644 chr2L 14525115 14525142 7 497 4.0 2.0 3.0 1.8 524 chr2L 14524618 intron CG33648 + chr2L 14524880 intron CG33648 + chr2L 14525142 exon CG33648 + chr2L_7_14520001 chr2L_14520001 RAL-176 286 chr2L 14554165 14554177 chr2L 14554241 14554254 6 77 5.5 3.5 4.5 1.1 89 chr2L 14554165 intergenic not near genes chr2L 14554210 intergenic not near genes chr2L 14554254 intergenic not near genes chr2L_6_14550001 chr2L_14550001 RAL-176 287 chr2L 14554179 14554183 chr2L 14554251 14554260 4 74 4.0 5.5 4.8 0.7 81 chr2L 14554179 intergenic not near genes chr2L 14554220 intergenic not near genes chr2L 14554260 intergenic not near genes chr2L_4_14550001 chr2L_14550001 RAL-176 288 chr2L 14554187 14554199 chr2L 14554247 14554275 8 74 2.0 5.0 3.5 1.8 88 chr2L 14554187 intergenic not near genes chr2L 14554231 intergenic not near genes chr2L 14554275 intergenic not near genes chr2L_8_14550001 chr2L_14550001 RAL-176 289 chr2L 14588383 14588417 chr2L 14588537 14588571 15 154 4.0 5.0 4.5 2.7 188 chr2L 14588383 intergenic CG42680 - chr2L 14588477 intergenic CG42680 - chr2L 14588571 intergenic CG42680 - chr2L_15_14585001 chr2L_14585001 RAL-176 290 chr2L 14642568 14642599 chr2L 14651731 14651762 roo 14 9163 3.0 4.0 3.5 3.1 9194 chr2L 14642568 intron osp - chr2L 14647165 intron osp - chr2L 14651762 intron osp - chr2L_14_14645001 chr2L_14645001 RAL-176 291 chr2L 14694259 14694283 chr2L 14694383 14694406 5 124 2.5 3.0 2.8 1.3 147 chr2L 14694259 intergenic not near genes chr2L 14694332 intergenic not near genes chr2L 14694406 intergenic not near genes chr2L_5_14690001 chr2L_14690001 RAL-176 292 chr2L 14721607 14721638 chr2L 14721683 14721716 12 77 6.0 3.0 4.5 2.2 109 chr2L 14721607 intergenic not near genes chr2L 14721662 intergenic not near genes chr2L 14721716 intergenic not near genes chr2L_12_14720001 chr2L_14720001 RAL-176 293 chr2L 14778814 14778836 chr2L 14779102 14779118 9 285 5.0 10.5 7.8 1.0 304 chr2L 14778814 intergenic not near genes chr2L 14778966 intergenic not near genes chr2L 14779118 intergenic not near genes chr2L_9_14775001 chr2L_14775001 RAL-176 294 chr2L 14803877 14803910 chr2L 14809080 14809113 copia 13 5201 5.0 5.5 5.2 2.1 5236 chr2L 14803877 intergenic not near genes chr2L 14806495 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_13_14805001 chr2L_14805001 RAL-176 295 chr2L 14840990 14841009 chr2L 14841073 14841096 6 86 1.5 3.0 2.2 1.9 106 chr2L 14840990 3` UTR CR43805 - chr2L 14841043 3` UTR CR43805 - chr2L 14841096 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-176 296 chr2L 14889952 14889988 chr2L 14890377 14890413 jockey 26 425 2.5 7.0 4.8 4.5 461 chr2L 14889952 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_26_14890001 chr2L_14890001 RAL-176 297 chr2L 15023962 15023988 chr2L 15024043 15024068 5 81 1.0 1.0 1.0 2.5 106 chr2L 15023962 intron GABA-B-R1 + chr2L 15024015 intron GABA-B-R1 + chr2L 15024068 intron GABA-B-R1 + chr2L_5_15020001 chr2L_15020001 RAL-176 298 chr2L 15066577 15066601 chr2L 15066669 15066694 17 92 14.0 6.0 10.0 1.5 117 chr2L 15066577 intron,intron vas +,vig - chr2L 15066636 intron,intron vas +,vig - chr2L 15066694 intron,intron vas +,vig - chr2L_17_15065001 chr2L_15065001 RAL-176 299 chr2L 15122777 15122788 chr2L 15122857 15122867 5 80 1.0 0.5 0.8 2.8 90 chr2L 15122777 intergenic not near genes chr2L 15122822 intergenic not near genes chr2L 15122867 intergenic not near genes chr2L_5_15120001 chr2L_15120001 RAL-176 300 chr2L 15226367 15226392 chr2L 15226443 15226468 10 75 4.0 3.0 3.5 2.2 101 chr2L 15226367 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226468 intergenic not near genes chr2L_10_15225001 chr2L_15225001 RAL-176 301 chr2L 15414687 15414721 chr2L 15414789 15414825 13 104 2.0 3.0 2.5 3.7 138 chr2L 15414687 intergenic not near genes chr2L 15414756 intergenic not near genes chr2L 15414825 intergenic not near genes chr2L_13_15410001 chr2L_15410001 RAL-176 302 chr2L 15427281 15427307 chr2L 15427467 15427493 7 186 4.5 2.0 3.2 1.7 212 chr2L 15427281 intergenic not near genes chr2L 15427387 intergenic not near genes chr2L 15427493 intergenic not near genes chr2L_7_15425001 chr2L_15425001 RAL-176 303 chr2L 15533271 15533298 chr2L 15533344 15533374 10 74 3.5 0.5 2.0 3.3 103 chr2L 15533271 intergenic not near genes chr2L 15533322 intergenic not near genes chr2L 15533374 intergenic not near genes chr2L_10_15530001 chr2L_15530001 RAL-176 304 chr2L 15586411 15586441 chr2L 15593463 15593492 297 8 7052 2.0 4.5 3.2 1.9 7081 chr2L 15586411 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593492 intergenic not near genes chr2L_8_15585001 chr2L_15585001 RAL-176 305 chr2L 15823353 15823371 chr2L 15823429 15823447 9 76 1.0 4.0 2.5 2.6 94 chr2L 15823353 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823447 intergenic not near genes chr2L_9_15820001 chr2L_15820001 RAL-176 306 chr2L 15948927 15948947 chr2L 15949027 15949048 8 101 3.5 1.5 2.5 2.3 121 chr2L 15948927 intron beat-Ib - chr2L 15948988 intron beat-Ib - chr2L 15949048 intron beat-Ib - chr2L_8_15945001 chr2L_15945001 RAL-176 307 chr2L 15950383 15950412 chr2L 15950461 15950490 4 78 1.5 1.0 1.2 1.8 107 chr2L 15950383 intron beat-Ib - chr2L 15950436 intron beat-Ib - chr2L 15950490 intron beat-Ib - chr2L_4_15950001 chr2L_15950001 RAL-176 308 chr2L 15956022 15956056 chr2L 15957489 15957522 hobo 7 1467 1.5 0.5 1.0 3.5 1500 chr2L 15956022 intron beat-Ib - chr2L 15956772 intron beat-Ib - chr2L 15957522 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-176 309 chr2L 15960852 15960863 chr2L 15961172 15961183 4 320 13.5 4.0 8.8 0.4 331 chr2L 15960852 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961018 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961183 intron,5` UTR beat-Ib -,CR43803 + chr2L_4_15960001 chr2L_15960001 RAL-176 310 chr2L 10176023 10176024 chr2L 16071771 16071771 5 5895748 32.5 22.0 27.2 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_13120001 chr2L_13120001 RAL-176 311 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 38 145889 23.5 34.0 28.8 1.3 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_38_16140001 chr2L_16140001 RAL-176 312 chr2L 16149559 16149579 chr2L 16149826 16149846 5 267 4.5 3.5 4.0 1.0 287 chr2L 16149559 intergenic not near genes chr2L 16149702 intergenic not near genes chr2L 16149846 intergenic not near genes chr2L_5_16145001 chr2L_16145001 RAL-176 313 chr2L 9084336 9084340 chr2L 16217660 16217660 29 7133321 26.5 34.0 30.2 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_29_12650001 chr2L_12650001 RAL-176 314 chr2L 15557166 15557166 chr2L 16217660 16217660 4 660494 30.0 34.0 32.0 0.1 660494 chr2L 15557166 intron kek3 + chr2L 15887413 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_15885001 chr2L_15885001 RAL-176 315 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 28 145889 23.5 34.0 28.8 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_28_16140001 chr2L_16140001 RAL-176 316 chr2L 16217660 16217660 chr2L 18622718 18622720 9 2405059 28.5 39.5 34.0 0.3 2405060 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622720 intron MESR3 + chr2L_9_17420001 chr2L_17420001 RAL-176 317 chr2L 16254895 16254916 chr2L 16255154 16255175 4 259 2.5 1.0 1.8 1.4 280 chr2L 16254895 intron PRL-1 - chr2L 16255035 intron PRL-1 - chr2L 16255175 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-176 318 chr2L 16280253 16280286 chr2L 16281423 16281456 1360 20 1168 3.5 7.5 5.5 3.1 1203 chr2L 16280253 intron crp - chr2L 16280854 intron crp - chr2L 16281456 intron crp - chr2L_20_16280001 chr2L_16280001 RAL-176 319 chr2L 16455811 16455839 chr2L 16455894 16455921 8 82 1.5 3.5 2.5 2.3 110 chr2L 16455811 intergenic not near genes chr2L 16455866 intergenic not near genes chr2L 16455921 intergenic not near genes chr2L_8_16455001 chr2L_16455001 RAL-176 320 chr2L 16654702 16654736 chr2L 16654795 16654828 10 92 2.0 6.0 4.0 2.0 126 chr2L 16654702 intron CG42389 + chr2L 16654765 intron CG42389 + chr2L 16654828 intron CG42389 + chr2L_10_16650001 chr2L_16650001 RAL-176 321 chr2L 16712719 16712725 chr2L 16712926 16712933 4 208 5.5 6.5 6.0 0.6 214 chr2L 16712719 intron CG31808 - chr2L 16712826 intron CG31808 - chr2L 16712933 intron CG31808 - chr2L_4_16710001 chr2L_16710001 RAL-176 322 chr2L 16920219 16920251 chr2L 16920478 16920510 19 259 3.0 4.5 3.8 4.0 291 chr2L 16920219 intergenic not near genes chr2L 16920364 intergenic not near genes chr2L 16920510 intergenic not near genes chr2L_19_16920001 chr2L_16920001 RAL-176 323 chr2L 16952695 16952716 chr2L 16952803 16952825 9 108 2.5 4.5 3.5 2.0 130 chr2L 16952695 intergenic not near genes chr2L 16952760 intergenic not near genes chr2L 16952825 intergenic not near genes chr2L_9_16950001 chr2L_16950001 RAL-176 324 chr2L 17033918 17033944 chr2L 17034003 17034029 5 85 3.5 2.5 3.0 1.2 111 chr2L 17033918 intergenic not near genes chr2L 17033974 intergenic not near genes chr2L 17034029 intergenic not near genes chr2L_5_17030001 chr2L_17030001 RAL-176 325 chr2L 17050029 17050050 chr2L 17050116 17050136 9 85 3.0 10.0 6.5 1.2 107 chr2L 17050029 intergenic not near genes chr2L 17050082 intergenic not near genes chr2L 17050136 intergenic not near genes chr2L_9_17050001 chr2L_17050001 RAL-176 326 chr2L 17120843 17120875 chr2L 17120922 17120954 6 79 1.0 1.5 1.2 2.7 111 chr2L 17120843 intergenic not near genes chr2L 17120898 intergenic not near genes chr2L 17120954 intergenic not near genes chr2L_6_17120001 chr2L_17120001 RAL-176 327 chr2L 17158733 17158742 chr2L 17158833 17158845 4 102 7.5 5.0 6.2 0.6 112 chr2L 17158733 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158789 intron,intron CG34106 +,beat-IIIa + chr2L 17158845 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-176 328 chr2L 17167566 17167585 chr2L 17167805 17167825 pogo 5 240 2.5 2.0 2.2 1.6 259 chr2L 17167566 intron,intron CG34106 +,beat-IIIa + chr2L 17167696 intron,intron CG34106 +,beat-IIIa + chr2L 17167825 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-176 329 chr2L 17273196 17273230 chr2L 17277972 17278004 F-element 27 4780 2.0 3.0 2.5 7.7 4808 chr2L 17273196 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278004 intergenic not near genes chr2L_27_17275001 chr2L_17275001 RAL-176 330 chr2L 17327910 17327925 chr2L 17327996 17328011 9 86 5.0 3.5 4.2 1.7 101 chr2L 17327910 intergenic not near genes chr2L 17327960 intergenic not near genes chr2L 17328011 intergenic not near genes chr2L_9_17325001 chr2L_17325001 RAL-176 331 chr2L 17329071 17329103 chr2L 17329199 17329231 6 127 1.5 0.0 0.8 3.3 160 chr2L 17329071 intergenic not near genes chr2L 17329151 intergenic not near genes chr2L 17329231 intergenic not near genes chr2L_6_17325001 chr2L_17325001 RAL-176 332 chr2L 17344882 17344901 chr2L 17344959 17344978 6 77 1.0 3.5 2.2 1.9 96 chr2L 17344882 intergenic not near genes chr2L 17344930 intergenic not near genes chr2L 17344978 intergenic not near genes chr2L_6_17340001 chr2L_17340001 RAL-176 333 chr2L 17425769 17425790 chr2L 17425896 17425916 5 127 0.0 1.0 0.5 3.3 147 chr2L 17425769 intron Dif - chr2L 17425842 intron Dif - chr2L 17425916 intron Dif - chr2L_5_17425001 chr2L_17425001 RAL-176 334 chr2L 17819920 17819953 chr2L 17825123 17825156 copia 8 5202 0.5 4.5 2.5 2.3 5236 chr2L 17819920 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825156 intron CadN2 - chr2L_8_17820001 chr2L_17820001 RAL-176 335 chr2L 17837151 17837182 chr2L 17837250 17837282 9 98 8.0 3.0 5.5 1.4 131 chr2L 17837151 intron CadN2 - chr2L 17837216 intron CadN2 - chr2L 17837282 intron CadN2 - chr2L_9_17835001 chr2L_17835001 RAL-176 336 chr2L 17879631 17879665 chr2L 17879712 17879746 14 80 4.0 5.0 4.5 2.5 115 chr2L 17879631 intergenic not near genes chr2L 17879688 intergenic not near genes chr2L 17879746 intergenic not near genes chr2L_14_17875001 chr2L_17875001 RAL-176 337 chr2L 17891465 17891492 chr2L 17891541 17891567 5 77 4.5 4.0 4.2 1.0 102 chr2L 17891465 intergenic not near genes chr2L 17891516 intergenic not near genes chr2L 17891567 intergenic not near genes chr2L_5_17890001 chr2L_17890001 RAL-176 338 chr2L 17911965 17911990 chr2L 17914143 17914165 pogo 5 2177 3.5 4.5 4.0 1.0 2200 chr2L 17911965 intergenic not near genes chr2L 17913065 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-176 339 chr2L 17947818 17947850 chr2L 17948150 17948169 11 330 4.0 2.0 3.0 2.8 351 chr2L 17947818 intergenic CR44398 - chr2L 17947994 intergenic CR44398 - chr2L 17948169 3` UTR CR44398 - chr2L_11_17945001 chr2L_17945001 RAL-176 340 chr2L 17951958 17951978 chr2L 17953417 17953445 hobo 4 1465 1.5 2.0 1.8 1.4 1487 chr2L 17951958 intergenic CR44398 -,CR44397 - chr2L 17952702 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-176 341 chr2L 18009733 18009756 chr2L 18009816 18009830 9 81 8.0 5.5 6.8 1.2 97 chr2L 18009733 3` UTR elfless - chr2L 18009782 3` UTR elfless - chr2L 18009830 3` UTR elfless - chr2L_9_18005001 chr2L_18005001 RAL-176 342 chr2L 18027783 18027815 chr2L 18027869 18027902 10 87 3.5 4.0 3.8 2.1 119 chr2L 18027783 intron rdo + chr2L 18027842 intron rdo + chr2L 18027902 intron rdo + chr2L_10_18025001 chr2L_18025001 RAL-176 343 chr2L 18029430 18029445 chr2L 18029550 18029582 6 134 2.5 0.0 1.2 2.7 152 chr2L 18029430 intron rdo + chr2L 18029506 intron rdo + chr2L 18029582 intron rdo + chr2L_6_18025001 chr2L_18025001 RAL-176 344 chr2L 18051878 18051907 chr2L 18061020 18061054 roo 15 9146 8.5 4.5 6.5 2.0 9176 chr2L 18051878 intron rdo + chr2L 18056466 intron rdo + chr2L 18061054 intron rdo + chr2L_15_18055001 chr2L_18055001 RAL-176 345 chr2L 18079819 18079848 chr2L 18079905 18079934 16 86 1.5 8.0 4.8 2.8 115 chr2L 18079819 intron Arr1 + chr2L 18079876 intron Arr1 + chr2L 18079934 intron Arr1 + chr2L_16_18075001 chr2L_18075001 RAL-176 346 chr2L 18099313 18099347 chr2L 18099468 18099476 7 151 2.5 2.0 2.2 2.2 163 chr2L 18099313 intergenic not near genes chr2L 18099394 intergenic not near genes chr2L 18099476 intergenic not near genes chr2L_7_18095001 chr2L_18095001 RAL-176 347 chr2L 18111247 18111261 chr2L 18111338 18111352 4 91 5.0 5.5 5.2 0.6 105 chr2L 18111247 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111352 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-176 348 chr2L 18167329 18167359 chr2L 18167411 18167441 8 82 4.0 3.0 3.5 1.8 112 chr2L 18167329 intron CG42750 - chr2L 18167385 intron CG42750 - chr2L 18167441 intron CG42750 - chr2L_8_18165001 chr2L_18165001 RAL-176 349 chr2L 18179583 18179588 chr2L 18179842 18179848 5 260 15.5 4.0 9.8 0.5 265 chr2L 18179583 intron CG42750 - chr2L 18179716 intron CG42750 - chr2L 18179848 intron CG42750 - chr2L_5_18175001 chr2L_18175001 RAL-176 350 chr2L 18179589 18179607 chr2L 18179841 18179867 19 259 8.5 4.0 6.2 2.6 278 chr2L 18179589 intron CG42750 - chr2L 18179728 intron CG42750 - chr2L 18179867 intron CG42750 - chr2L_19_18175001 chr2L_18175001 RAL-176 351 chr2L 18245523 18245551 chr2L 18245677 18245705 12 152 3.5 1.5 2.5 3.4 182 chr2L 18245523 intron CG42750 - chr2L 18245614 intron CG42750 - chr2L 18245705 intron CG42750 - chr2L_12_18245001 chr2L_18245001 RAL-176 352 chr2L 18298931 18298966 chr2L 18299008 18299014 15 72 2.5 2.5 2.5 4.3 83 chr2L 18298931 intergenic not near genes chr2L 18298972 intergenic not near genes chr2L 18299014 intergenic not near genes chr2L_15_18295001 chr2L_18295001 RAL-176 353 chr2L 18329047 18329079 chr2L 18329132 18329165 6 86 5.5 1.5 3.5 1.3 118 chr2L 18329047 intron Fas3 + chr2L 18329106 intron Fas3 + chr2L 18329165 intron Fas3 + chr2L_6_18325001 chr2L_18325001 RAL-176 354 chr2L 18355498 18355533 chr2L 18355786 18355808 10 283 2.5 3.0 2.8 2.6 310 chr2L 18355498 intron Fas3 + chr2L 18355653 intron Fas3 + chr2L 18355808 intron Fas3 + chr2L_10_18355001 chr2L_18355001 RAL-176 355 chr2L 18364263 18364291 chr2L 18364363 18364391 5 100 0.5 1.5 1.0 2.5 128 chr2L 18364263 intron Fas3 + chr2L 18364327 intron Fas3 + chr2L 18364391 intron Fas3 + chr2L_5_18360001 chr2L_18360001 RAL-176 356 chr2L 18366820 18366836 chr2L 18367075 18367091 6 255 0.5 5.0 2.8 1.6 271 chr2L 18366820 intron Fas3 + chr2L 18366956 intron Fas3 + chr2L 18367091 intron Fas3 + chr2L_6_18365001 chr2L_18365001 RAL-176 357 chr2L 18408026 18408053 chr2L 18412810 18412822 Doc 10 4782 3.5 0.0 1.8 3.6 4796 chr2L 18408026 intergenic not near genes chr2L 18410424 intergenic not near genes chr2L 18412822 intergenic not near genes chr2L_10_18410001 chr2L_18410001 RAL-176 358 chr2L 18546231 18546254 chr2L 18546316 18546339 15 85 5.5 13.5 9.5 1.4 108 chr2L 18546231 intron Pde11 - chr2L 18546285 intron Pde11 - chr2L 18546339 intron Pde11 - chr2L_15_18545001 chr2L_18545001 RAL-176 359 chr2L 16217660 16217660 chr2L 18622713 18622719 7 2405057 28.5 38.0 33.2 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_7_17420001 chr2L_17420001 RAL-176 360 chr2L 18729233 18729268 chr2L 18729321 18729356 7 88 4.0 0.0 2.0 2.3 123 chr2L 18729233 intron CG10348 - chr2L 18729294 intron CG10348 - chr2L 18729356 intron CG10348 - chr2L_7_18725001 chr2L_18725001 RAL-176 361 chr2L 18811406 18811422 chr2L 18811488 18811504 4 82 3.0 0.0 1.5 1.6 98 chr2L 18811406 intergenic CG10570 -,CG42502 - chr2L 18811455 intergenic CG10570 -,CG42502 - chr2L 18811504 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-176 362 chr2L 18812560 18812590 chr2L 18812823 18812853 8 262 3.5 4.0 3.8 1.7 293 chr2L 18812560 intergenic CG17325 +,CG42305 + chr2L 18812706 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-176 363 chr2L 18883853 18883888 chr2L 18883934 18883957 14 80 2.5 4.5 3.5 3.1 104 chr2L 18883853 intergenic not near genes chr2L 18883905 intergenic not near genes chr2L 18883957 intergenic not near genes chr2L_14_18880001 chr2L_18880001 RAL-176 364 chr2L 18996005 18996028 chr2L 18996094 18996115 15 88 9.0 6.5 7.8 1.7 110 chr2L 18996005 intergenic CG10650 - chr2L 18996060 intergenic CG10650 - chr2L 18996115 intergenic CG10650 - chr2L_15_18995001 chr2L_18995001 RAL-176 365 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744195 24.5 35.0 29.8 0.1 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-176 366 chr2L 19070269 19070280 chr2L 19070362 19070373 8 92 21.0 4.0 12.5 0.6 104 chr2L 19070269 intergenic CG10702 - chr2L 19070321 intergenic CG10702 - chr2L 19070373 intergenic not near genes chr2L_8_19070001 chr2L_19070001 RAL-176 367 chr2L 19070281 19070300 chr2L 19070361 19070393 14 85 11.0 4.0 7.5 1.6 112 chr2L 19070281 intergenic CG10702 - chr2L 19070337 intergenic CG10702 - chr2L 19070393 intergenic not near genes chr2L_14_19070001 chr2L_19070001 RAL-176 368 chr2L 19147370 19147403 chr2L 19154404 19154437 297 8 7034 2.5 1.5 2.0 2.7 7067 chr2L 19147370 intron brat + chr2L 19150904 intron brat + chr2L 19154437 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-176 369 chr2L 19182971 19183004 chr2L 19183050 19183083 24 78 7.0 6.0 6.5 3.2 112 chr2L 19182971 intergenic CR17567 -,CG42688 - chr2L 19183027 intergenic CR17567 -,CG42688 - chr2L 19183083 3` UTR CR17567 - chr2L_24_19180001 chr2L_19180001 RAL-176 370 chr2L 19183342 19183358 chr2L 19183421 19183437 4 80 7.0 3.5 5.2 0.6 95 chr2L 19183342 intron CR17567 - chr2L 19183390 intron CR17567 - chr2L 19183437 3` UTR CR17567 - chr2L_4_19180001 chr2L_19180001 RAL-176 371 chr2L 19199668 19199705 chr2L 19199745 19199782 16 75 2.5 2.5 2.5 4.6 114 chr2L 19199668 intron drl + chr2L 19199725 intron drl + chr2L 19199782 intron drl + chr2L_16_19195001 chr2L_19195001 RAL-176 372 chr2L 19209614 19209648 chr2L 19209699 19209733 9 84 1.0 2.5 1.8 3.2 119 chr2L 19209614 intergenic not near genes chr2L 19209674 intergenic not near genes chr2L 19209733 intergenic not near genes chr2L_9_19205001 chr2L_19205001 RAL-176 373 chr2L 19331667 19331698 chr2L 19331744 19331744 8 68 3.0 5.5 4.2 1.5 77 chr2L 19331667 intergenic not near genes chr2L 19331706 intergenic not near genes chr2L 19331744 intergenic not near genes chr2L_8_19330001 chr2L_19330001 RAL-176 374 chr2L 19345013 19345033 chr2L 19357222 19357241 blood 9 12208 8.5 5.0 6.8 1.2 12228 chr2L 19345013 intron dnt - chr2L 19351127 intron dnt - chr2L 19357241 intron dnt - chr2L_9_19350001 chr2L_19350001 RAL-176 375 chr2L 19345037 19345045 chr2L 19357220 19357254 blood 5 12203 3.5 4.0 3.8 1.0 12217 chr2L 19345037 intron dnt - chr2L 19351146 intron dnt - chr2L 19357254 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-176 376 chr2L 19357555 19357568 chr2L 19357645 19357658 6 90 5.5 6.0 5.8 0.9 103 chr2L 19357555 intron dnt - chr2L 19357606 intron dnt - chr2L 19357658 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-176 377 chr2L 19376353 19376373 chr2L 19376737 19376748 7 382 0.0 3.5 1.8 2.5 395 chr2L 19376353 intergenic not near genes chr2L 19376550 intergenic not near genes chr2L 19376748 intergenic not near genes chr2L_7_19375001 chr2L_19375001 RAL-176 378 chr2L 19407719 19407736 chr2L 19407916 19407933 7 196 2.5 8.0 5.2 1.1 214 chr2L 19407719 intron Pax - chr2L 19407826 intron Pax - chr2L 19407933 intron Pax - chr2L_7_19405001 chr2L_19405001 RAL-176 379 chr2L 19415578 19415598 chr2L 19415766 19415786 9 188 0.5 6.0 3.2 2.1 208 chr2L 19415578 intron Pax - chr2L 19415682 intron Pax - chr2L 19415786 intron Pax - chr2L_9_19415001 chr2L_19415001 RAL-176 380 chr2L 19437524 19437532 chr2L 19437616 19437624 5 92 5.0 4.5 4.8 0.9 100 chr2L 19437524 intron CG10237 - chr2L 19437574 intron CG10237 - chr2L 19437624 intron CG10237 - chr2L_5_19435001 chr2L_19435001 RAL-176 381 chr2L 19441070 19441088 chr2L 19441147 19441165 12 77 5.0 9.5 7.2 1.5 95 chr2L 19441070 intron CG10237 - chr2L 19441118 intron CG10237 - chr2L 19441165 5` UTR CG10237 - chr2L_12_19440001 chr2L_19440001 RAL-176 382 chr2L 19469172 19469192 chr2L 19469257 19469277 14 85 4.5 6.5 5.5 2.2 105 chr2L 19469172 5` UTR CR45722 + chr2L 19469224 5` UTR CR45722 + chr2L 19469277 5` UTR CR45722 + chr2L_14_19465001 chr2L_19465001 RAL-176 383 chr2L 19541633 19541655 chr2L 19541718 19541740 12 84 0.0 1.5 0.8 6.7 107 chr2L 19541633 intergenic CG13081 + chr2L 19541686 intergenic CG13081 + chr2L 19541740 intergenic CG13081 + chr2L_12_19540001 chr2L_19540001 RAL-176 384 chr2L 19544599 19544628 chr2L 19544663 19544663 18 68 8.5 7.5 8.0 2.0 64 chr2L 19544599 exon ref(2)P + chr2L 19544631 exon ref(2)P + chr2L 19544663 exon ref(2)P + chr2L_18_19540001 chr2L_19540001 RAL-176 385 chr2L 19558523 19558548 chr2L 19558626 19558652 8 104 2.5 2.5 2.5 2.3 129 chr2L 19558523 intron Tep5 + chr2L 19558588 intron Tep5 + chr2L 19558652 intron Tep5 + chr2L_8_19555001 chr2L_19555001 RAL-176 386 chr2L 19560003 19560034 chr2L 19560256 19560286 7 252 3.5 2.0 2.8 1.8 283 chr2L 19560003 exon Tep5 + chr2L 19560144 exon Tep5 + chr2L 19560286 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-176 387 chr2L 19560839 19560863 chr2L 19560919 19560943 7 80 3.0 0.0 1.5 2.8 104 chr2L 19560839 intron Tep5 + chr2L 19560891 exon Tep5 + chr2L 19560943 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-176 388 chr2L 19561344 19561368 chr2L 19561485 19561509 10 141 4.5 5.5 5.0 1.7 165 chr2L 19561344 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561509 exon Tep5 + chr2L_10_19560001 chr2L_19560001 RAL-176 389 chr2L 19587797 19587824 chr2L 19587888 19587921 14 94 4.0 3.5 3.8 2.9 124 chr2L 19587797 intron Lar + chr2L 19587859 intron Lar + chr2L 19587921 intron Lar + chr2L_14_19585001 chr2L_19585001 RAL-176 390 chr2L 19601575 19601595 chr2L 19601652 19601672 5 77 1.0 2.0 1.5 2.0 97 chr2L 19601575 intron,intron Lar +,CR44978 - chr2L 19601624 intron,intron Lar +,CR44978 - chr2L 19601672 intron,intron Lar +,CR44978 - chr2L_5_19600001 chr2L_19600001 RAL-176 391 chr2L 19620096 19620131 chr2L 19621083 19621120 jockey 20 986 4.0 7.0 5.5 3.1 1024 chr2L 19620096 intron Lar + chr2L 19620608 intron Lar + chr2L 19621120 intron Lar + chr2L_20_19620001 chr2L_19620001 RAL-176 392 chr2L 19652582 19652597 chr2L 19674011 19674031 opus 7 21433 5.0 2.5 3.8 1.5 21449 chr2L 19652582 intron Lar + chr2L 19663306 intron Lar + chr2L 19674031 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-176 393 chr2L 19703539 19703570 chr2L 19712675 19712699 roo 10 9135 6.0 5.0 5.5 1.5 9160 chr2L 19703539 intron Lar + chr2L 19708119 intron Lar + chr2L 19712699 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-176 394 chr2L 19737366 19737389 chr2L 19740824 19740858 1360 15 3465 3.0 6.5 4.8 2.6 3492 chr2L 19737366 intergenic Nf-YB + chr2L 19739112 intergenic not near genes chr2L 19740858 intergenic not near genes chr2L_15_19735001 chr2L_19735001 RAL-176 395 chr2L 19762807 19762838 chr2L 19763049 19763079 pogo 17 242 4.5 2.5 3.5 3.8 272 chr2L 19762807 5` UTR fbp - chr2L 19762943 intron fbp - chr2L 19763079 intron fbp - chr2L_17_19760001 chr2L_19760001 RAL-176 396 chr2L 19801163 19801188 chr2L 19801433 19801456 9 269 2.0 2.5 2.2 2.8 293 chr2L 19801163 intron sick + chr2L 19801310 intron sick + chr2L 19801456 intron sick + chr2L_9_19800001 chr2L_19800001 RAL-176 397 chr2L 19824412 19824428 chr2L 19824495 19824511 5 83 3.0 2.5 2.8 1.3 99 chr2L 19824412 intron sick + chr2L 19824462 intron sick + chr2L 19824511 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-176 398 chr2L 19837276 19837309 chr2L 19837356 19837389 21 79 4.0 6.0 5.0 3.5 113 chr2L 19837276 intron sick + chr2L 19837332 intron sick + chr2L 19837389 intron sick + chr2L_21_19835001 chr2L_19835001 RAL-176 399 chr2L 19913069 19913082 chr2L 19913515 19913528 5 445 1.5 1.5 1.5 2.0 459 chr2L 19913069 intron,exon sick +,Victoria - chr2L 19913298 intron,exon sick +,Victoria - chr2L 19913528 intron sick + chr2L_5_19910001 chr2L_19910001 RAL-176 400 chr2L 19964837 19964865 chr2L 19964920 19964951 20 82 8.0 4.0 6.0 2.9 114 chr2L 19964837 intron CG10680 + chr2L 19964894 exon CG10680 + chr2L 19964951 exon CG10680 + chr2L_20_19960001 chr2L_19960001 RAL-176 401 chr2L 20005879 20005904 chr2L 20010950 20010980 flea 4 5075 2.0 4.5 3.2 1.0 5101 chr2L 20005879 intron CG43861 - chr2L 20008430 intron CG43861 - chr2L 20010980 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-176 402 chr2L 20041433 20041461 chr2L 20041518 20041543 11 84 4.5 3.5 4.0 2.2 110 chr2L 20041433 intron sNPF + chr2L 20041488 intron sNPF + chr2L 20041543 intron sNPF + chr2L_11_20040001 chr2L_20040001 RAL-176 403 chr2L 20098713 20098745 chr2L 20098997 20099029 13 284 4.5 3.5 4.0 2.6 316 chr2L 20098713 intron Kua + chr2L 20098871 intron Kua + chr2L 20099029 intron Kua + chr2L_13_20095001 chr2L_20095001 RAL-176 404 chr2L 20226266 20226287 chr2L 20226348 20226369 10 82 4.5 9.5 7.0 1.2 103 chr2L 20226266 intergenic not near genes chr2L 20226318 intergenic not near genes chr2L 20226369 intergenic not near genes chr2L_10_20225001 chr2L_20225001 RAL-176 405 chr2L 20236515 20236537 chr2L 20236591 20236613 5 75 0.5 2.0 1.2 2.3 98 chr2L 20236515 intergenic not near genes chr2L 20236564 intergenic not near genes chr2L 20236613 intergenic not near genes chr2L_5_20235001 chr2L_20235001 RAL-176 406 chr2L 20272114 20272140 chr2L 20282825 20282851 copia 5 10711 3.5 4.5 4.0 1.0 10737 chr2L 20272114 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282851 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-176 407 chr2L 20296510 20296540 chr2L 20296591 20296621 12 80 1.0 5.5 3.2 2.9 111 chr2L 20296510 intergenic CR43414 - chr2L 20296566 intergenic CR43414 - chr2L 20296621 intergenic CR43414 - chr2L_12_20295001 chr2L_20295001 RAL-176 408 chr2L 20303169 20303180 chr2L 20310637 20310648 blood 4 7468 1.5 5.0 3.2 1.0 7479 chr2L 20303169 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310648 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-176 409 chr2L 20310883 20310922 chr2L 20310962 20311001 12 79 2.5 7.0 4.8 2.1 118 chr2L 20310883 intergenic spir + chr2L 20310942 intergenic spir + chr2L 20311001 intergenic spir + chr2L_12_20310001 chr2L_20310001 RAL-176 410 chr2L 20372227 20372246 chr2L 20372468 20372487 pogo 6 240 1.0 5.0 3.0 1.5 260 chr2L 20372227 intergenic Ugt37a1 - chr2L 20372357 intergenic Ugt37a1 - chr2L 20372487 exon Ugt37a1 - chr2L_6_20370001 chr2L_20370001 RAL-176 411 chr2L 20380058 20380092 chr2L 20380141 20380175 19 82 8.5 3.5 6.0 2.7 117 chr2L 20380058 intron CG16798 - chr2L 20380116 intron CG16798 - chr2L 20380175 intron CG16798 - chr2L_19_20380001 chr2L_20380001 RAL-176 412 chr2L 20400369 20400390 chr2L 20400488 20400509 5 119 4.0 2.0 3.0 1.2 140 chr2L 20400369 intron CG10947 - chr2L 20400439 intron CG10947 - chr2L 20400509 intron CG10947 - chr2L_5_20400001 chr2L_20400001 RAL-176 413 chr2L 20498689 20498705 chr2L 20498788 20498804 9 97 4.5 8.5 6.5 1.2 115 chr2L 20498689 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_9_20495001 chr2L_20495001 RAL-176 414 chr2L 20518274 20518413 chr2L 20518376 20518498 25 91 0.0 0.0 0.0 25.0 224 chr2L 20518274 intergenic not near genes chr2L 20518386 intergenic not near genes chr2L 20518498 intergenic not near genes chr2L_25_20515001 chr2L_20515001 RAL-176 415 chr2L 20525967 20525984 chr2L 20526035 20526061 9 76 3.0 6.0 4.5 1.6 94 chr2L 20525967 intergenic not near genes chr2L 20526014 intergenic not near genes chr2L 20526061 intergenic not near genes chr2L_9_20525001 chr2L_20525001 RAL-176 416 chr2L 20568660 20568680 chr2L 20569050 20569070 X-element 10 390 9.0 3.0 6.0 1.4 410 chr2L 20568660 intron CR45347 + chr2L 20568865 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_10_20565001 chr2L_20565001 RAL-176 417 chr2L 20576219 20576250 chr2L 20583687 20583716 blood 11 7467 7.0 4.0 5.5 1.7 7497 chr2L 20576219 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_11_20575001 chr2L_20575001 RAL-176 418 chr2L 20623920 20623943 chr2L 20623997 20624022 7 77 4.5 6.0 5.2 1.1 102 chr2L 20623920 intron CR44909 - chr2L 20623971 intron CR44909 - chr2L 20624022 intron CR44909 - chr2L_7_20620001 chr2L_20620001 RAL-176 419 chr2L 12488766 12488770 chr2L 20700344 20700345 4 8211576 3.5 23.0 13.2 0.3 8211579 chr2L 12488766 intron bun - chr2L 16594556 intron CG42389 + chr2L 20700345 intron Hr38 - chr2L_4_16590001 chr2L_16590001 RAL-176 420 chr2L 20722982 20723010 chr2L 20723073 20723076 14 88 2.5 5.5 4.0 2.8 94 chr2L 20722982 intergenic not near genes chr2L 20723029 intergenic not near genes chr2L 20723076 intergenic not near genes chr2L_14_20720001 chr2L_20720001 RAL-176 421 chr2L 20806086 20806100 chr2L 20806170 20806184 5 84 1.0 7.5 4.2 1.0 98 chr2L 20806086 intron CG9328 + chr2L 20806135 intron CG9328 + chr2L 20806184 intron CG9328 + chr2L_5_20805001 chr2L_20805001 RAL-176 422 chr2L 20819112 20819141 chr2L 20819196 20819225 7 83 2.5 3.0 2.8 1.8 113 chr2L 20819112 intergenic not near genes chr2L 20819168 intergenic not near genes chr2L 20819225 intergenic not near genes chr2L_7_20815001 chr2L_20815001 RAL-176 423 chr2L 20821499 20821522 chr2L 20821647 20821670 18 147 11.0 7.5 9.2 1.8 171 chr2L 20821499 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821670 intergenic not near genes chr2L_18_20820001 chr2L_20820001 RAL-176 424 chr2L 20835807 20835840 chr2L 20836524 20836557 Quasimodo 5 717 0.5 1.0 0.8 2.8 750 chr2L 20835807 5` UTR Oseg5 - chr2L 20836182 intergenic Oseg5 -,Spn38F - chr2L 20836557 intergenic Spn38F - chr2L_5_20835001 chr2L_20835001 RAL-176 425 chr2L 20840301 20840333 chr2L 20840498 20840531 21 197 2.5 2.0 2.2 6.6 230 chr2L 20840301 intergenic CG31676 + chr2L 20840416 intergenic CG31676 + chr2L 20840531 intergenic CG31676 + chr2L_21_20840001 chr2L_20840001 RAL-176 426 chr2L 20852292 20852309 chr2L 20852370 20852388 5 77 6.0 9.0 7.5 0.6 96 chr2L 20852292 intergenic twit + chr2L 20852340 intergenic twit + chr2L 20852388 intergenic twit + chr2L_5_20850001 chr2L_20850001 RAL-176 427 chr2L 20852416 20852440 chr2L 20852495 20852497 4 77 2.5 4.0 3.2 1.0 81 chr2L 20852416 intergenic twit + chr2L 20852456 intergenic twit + chr2L 20852497 intergenic twit + chr2L_4_20850001 chr2L_20850001 RAL-176 428 chr2L 20891280 20891297 chr2L 20891366 20891383 10 85 6.5 0.0 3.2 2.4 103 chr2L 20891280 intron,intron CG43739 -,sky - chr2L 20891332 intron,intron CG43739 -,sky - chr2L 20891383 intron,intron CG43739 -,sky - chr2L_10_20890001 chr2L_20890001 RAL-176 429 chr2L 20901454 20901491 chr2L 20902617 20902639 1360 19 1162 4.5 0.5 2.5 5.4 1185 chr2L 20901454 intron,intron CG43739 -,sky - chr2L 20902046 intron,intron CG43739 -,sky - chr2L 20902639 intron,intron CG43739 -,sky - chr2L_19_20900001 chr2L_20900001 RAL-176 430 chr2L 20922831 20922850 chr2L 20922918 20922945 10 90 2.0 4.0 3.0 2.5 114 chr2L 20922831 5` UTR Mtp - chr2L 20922888 intergenic Mtp - chr2L 20922945 intergenic Mtp - chr2L_10_20920001 chr2L_20920001 RAL-176 431 chr2L 20976649 20976679 chr2L 20981464 20981494 X-element 7 4815 3.5 5.5 4.5 1.3 4845 chr2L 20976649 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981494 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-176 432 chr2L 21020272 21020311 chr2L 21023948 21023988 NOF 26 3676 2.0 9.0 5.5 4.0 3716 chr2L 21020272 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023988 intron CG42238 - chr2L_26_21020001 chr2L_21020001 RAL-176 433 chr2L 21041136 21041167 chr2L 21049395 21049428 Tirant 8 8261 3.5 3.5 3.5 1.8 8292 chr2L 21041136 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-176 434 chr2L 21193347 21193373 chr2L 21193431 21193457 10 83 6.0 2.0 4.0 2.0 110 chr2L 21193347 intron Ret - chr2L 21193402 intron Ret - chr2L 21193457 intron Ret - chr2L_10_21190001 chr2L_21190001 RAL-176 435 chr2L 21276665 21276679 chr2L 21276743 21276746 9 77 2.5 4.0 3.2 2.1 81 chr2L 21276665 intron CG8671 + chr2L 21276706 intron CG8671 + chr2L 21276746 intron CG8671 + chr2L_9_21275001 chr2L_21275001 RAL-176 436 chr2L 21286612 21286631 chr2L 21286690 21286708 8 78 3.0 2.5 2.8 2.1 96 chr2L 21286612 exon Mio - chr2L 21286660 intron Mio - chr2L 21286708 intron Mio - chr2L_8_21285001 chr2L_21285001 RAL-176 437 chr2L 21981688 21981712 chr2L 21990850 21990876 roo 11 9164 4.0 3.0 3.5 2.4 9188 chr2L 21981688 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-176 438 chr2L 22258620 22258633 chr2L 22260745 22260758 G6 9 2125 5.5 3.5 4.5 1.6 2138 chr2L 22258620 intergenic Tif-IA + chr2L 22259689 intergenic not near genes chr2L 22260758 intergenic not near genes chr2L_9_22255001 chr2L_22255001 RAL-176 439 chr2L 22294676 22294708 chr2L 22294753 22294785 6 76 2.0 2.0 2.0 2.0 109 chr2L 22294676 intergenic not near genes chr2L 22294730 intergenic not near genes chr2L 22294785 intergenic not near genes chr2L_6_22290001 chr2L_22290001 RAL-176 440 chr2L 22490511 22490524 chr2L 22497636 22497660 springer 4 7124 0.0 0.0 0.0 4.0 7149 chr2L 22490511 intergenic not near genes chr2L 22494086 intergenic not near genes chr2L 22497660 intergenic not near genes chr2L_4_22490001 chr2L_22490001 RAL-176 441 chr2L 171940 171941 chr2L 23165295 23165298 4 22993355 12.0 4.0 8.0 0.4 22993358 chr2L 171940 intron spen + chr2L 11668619 intergenic not near genes chr2L 23165298 intron CG12567 - chr2L_4_11665001 chr2L_11665001 RAL-176 442 chr2L 23241845 23241855 chr2L 23241925 23241933 4 78 15.0 2.5 8.8 0.4 88 chr2L 23241845 intergenic not near genes chr2L 23241889 intergenic not near genes chr2L 23241933 intergenic not near genes chr2L_4_23240001 chr2L_23240001 RAL-176 443 chr2R 469960 469977 chr2R 473201 473218 F-element 5 3239 2.5 1.0 1.8 1.8 3258 chr2R 469960 intergenic not near genes chr2R 471589 intergenic not near genes chr2R 473218 intergenic not near genes chr2R_5_470001 chr2R_470001 RAL-176 444 chr2R 1082371 1082376 chr2R 1087132 1087152 Doc 4 4768 9.5 3.5 6.5 0.5 4781 chr2R 1082371 intron rl + chr2R 1084762 intron rl + chr2R 1087152 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-176 445 chr2R 2498990 2499018 chr2R 2508137 2508165 roo 5 9144 2.5 2.0 2.2 1.6 9175 chr2R 2498990 intron MFS17 - chr2R 2503578 intron MFS17 - chr2R 2508165 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-176 446 chr2R 2688953 2688959 chr2R 4570970 4570977 aurora-element 4 1882018 9.0 4.0 6.5 0.5 1882024 chr2R 2688953 intergenic not near genes chr2R 3629965 intergenic not near genes chr2R 4570977 intergenic not near genes chr2R_4_3625001 chr2R_3625001 RAL-176 447 chr2R 3144091 3144110 chr2R 3393367 3393387 Doc 8 249278 6.0 13.0 9.5 0.8 249296 chr2R 3144091 intron CG42596 + chr2R 3268739 intergenic not near genes chr2R 3393387 intergenic not near genes chr2R_8_3265001 chr2R_3265001 RAL-176 448 chr2R 3291818 3292103 chr2R 3914992 3915264 9 623166 11.5 25.0 18.2 0.5 623446 chr2R 3291818 intergenic not near genes chr2R 3603541 intergenic not near genes chr2R 3915264 intron uex - chr2R_9_3600001 chr2R_3600001 RAL-176 449 chr2R 3293742 3293771 chr2R 3293820 3293849 7 78 1.0 0.5 0.8 3.9 107 chr2R 3293742 intergenic not near genes chr2R 3293796 intergenic not near genes chr2R 3293849 intergenic not near genes chr2R_7_3290001 chr2R_3290001 RAL-176 450 chr2R 4604551 4604582 chr2R 4604629 4604655 13 78 5.5 1.0 3.2 3.1 104 chr2R 4604551 intron p120ctn + chr2R 4604603 intron p120ctn + chr2R 4604655 intron p120ctn + chr2R_13_4600001 chr2R_4600001 RAL-176 451 chr2R 4750343 4750374 chr2R 4751496 4751524 1360 8 1150 2.0 2.0 2.0 2.7 1181 chr2R 4750343 intron conu + chr2R 4750934 intron conu + chr2R 4751524 intron conu + chr2R_8_4750001 chr2R_4750001 RAL-176 452 chr2R 4933355 4933392 chr2R 4933918 4933956 14 556 3.0 3.5 3.2 3.3 601 chr2R 4933355 intron Ir41a + chr2R 4933656 intron Ir41a + chr2R 4933956 intron Ir41a + chr2R_14_4930001 chr2R_4930001 RAL-176 453 chr2R 4940963 4940976 chr2R 4943413 4943424 5 2449 9.0 4.0 6.5 0.7 2461 chr2R 4940963 intron Ir41a + chr2R 4942194 intron Ir41a + chr2R 4943424 intron Ir41a + chr2R_5_4940001 chr2R_4940001 RAL-176 454 chr2R 5008996 5009004 chr2R 5009305 5009313 7 308 10.5 5.0 7.8 0.8 317 chr2R 5008996 intron Ir41a + chr2R 5009154 intron Ir41a + chr2R 5009313 intron Ir41a + chr2R_7_5005001 chr2R_5005001 RAL-176 455 chr2R 5009005 5009025 chr2R 5009301 5009333 9 306 4.5 5.0 4.8 1.6 328 chr2R 5009005 intron Ir41a + chr2R 5009169 intron Ir41a + chr2R 5009333 intron Ir41a + chr2R_9_5005001 chr2R_5005001 RAL-176 456 chr2R 5040756 5040762 chr2R 5041245 5041252 4 490 0.5 1.5 1.0 2.0 496 chr2R 5040756 intergenic not near genes chr2R 5041004 intergenic not near genes chr2R 5041252 intergenic not near genes chr2R_4_5040001 chr2R_5040001 RAL-176 457 chr2R 5080793 5080819 chr2R 5080884 5080910 10 89 1.0 2.5 1.8 3.6 117 chr2R 5080793 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080910 intergenic not near genes chr2R_10_5080001 chr2R_5080001 RAL-176 458 chr2R 5237350 5237370 chr2R 5237432 5237452 7 82 0.5 0.0 0.2 5.8 102 chr2R 5237350 intron Nipped-A - chr2R 5237401 intron Nipped-A - chr2R 5237452 intron Nipped-A - chr2R_7_5235001 chr2R_5235001 RAL-176 459 chr2R 5455781 5455806 chr2R 5455859 5455884 16 76 4.5 5.5 5.0 2.7 103 chr2R 5455781 3` UTR laccase2 + chr2R 5455832 3` UTR laccase2 + chr2R 5455884 3` UTR laccase2 + chr2R_16_5455001 chr2R_5455001 RAL-176 460 chr2R 5472374 5472392 chr2R 5472469 5472487 11 93 1.5 5.5 3.5 2.4 113 chr2R 5472374 intron CG30440 - chr2R 5472430 intron CG30440 - chr2R 5472487 intron CG30440 - chr2R_11_5470001 chr2R_5470001 RAL-176 461 chr2R 5509516 5509549 chr2R 5509612 5509645 12 96 2.0 4.5 3.2 2.9 129 chr2R 5509516 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509645 intron CG30438 + chr2R_12_5505001 chr2R_5505001 RAL-176 462 chr2R 5543199 5543223 chr2R 5547283 5547307 invader1 4 4083 0.5 2.5 1.5 1.6 4108 chr2R 5543199 intron CG30438 + chr2R 5545253 intron CG30438 + chr2R 5547307 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-176 463 chr2R 5581406 5581409 chr2R 5627595 5627618 4 46204 1.0 7.5 4.2 0.8 46212 chr2R 5581406 intergenic not near genes chr2R 5604512 exon Fis1 - chr2R 5627618 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-176 464 chr2R 5772533 5772548 chr2R 5772623 5772636 4 88 1.0 0.5 0.8 2.2 103 chr2R 5772533 3` UTR Gp210 + chr2R 5772584 3` UTR Gp210 + chr2R 5772636 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-176 465 chr2R 5859979 5860013 chr2R 5860091 5860125 11 108 4.5 3.0 3.8 2.3 146 chr2R 5859979 3` UTR dpr12 + chr2R 5860052 3` UTR dpr12 + chr2R 5860125 3` UTR dpr12 + chr2R_11_5860001 chr2R_5860001 RAL-176 466 chr2R 5861294 5861304 chr2R 5861415 5861420 7 120 7.5 11.5 9.5 0.7 126 chr2R 5861294 intergenic dpr12 + chr2R 5861357 intergenic not near genes chr2R 5861420 intergenic not near genes chr2R_7_5860001 chr2R_5860001 RAL-176 467 chr2R 5861305 5861320 chr2R 5861409 5861441 8 113 3.0 9.0 6.0 1.1 136 chr2R 5861305 intergenic dpr12 + chr2R 5861373 intergenic not near genes chr2R 5861441 intergenic not near genes chr2R_8_5860001 chr2R_5860001 RAL-176 468 chr2R 5869277 5869299 chr2R 5874353 5874375 flea 9 5075 2.5 1.5 2.0 3.0 5098 chr2R 5869277 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874375 intergenic not near genes chr2R_9_5870001 chr2R_5870001 RAL-176 469 chr2R 5876871 5876904 chr2R 5876973 5877006 12 102 7.0 6.0 6.5 1.6 135 chr2R 5876871 intergenic not near genes chr2R 5876938 intergenic not near genes chr2R 5877006 intergenic not near genes chr2R_12_5875001 chr2R_5875001 RAL-176 470 chr2R 5914146 5914161 chr2R 5914423 5914452 8 286 3.5 4.5 4.0 1.6 306 chr2R 5914146 intron CG43366 + chr2R 5914299 intron CG43366 + chr2R 5914452 intron CG43366 + chr2R_8_5910001 chr2R_5910001 RAL-176 471 chr2R 5951187 5951203 chr2R 5951276 5951289 9 87 4.0 4.5 4.2 1.7 102 chr2R 5951187 intergenic not near genes chr2R 5951238 intergenic not near genes chr2R 5951289 intergenic not near genes chr2R_9_5950001 chr2R_5950001 RAL-176 472 chr2R 6037457 6037480 chr2R 6037542 6037565 15 85 3.0 5.5 4.2 2.9 108 chr2R 6037457 intron CG14591 - chr2R 6037511 intron CG14591 - chr2R 6037565 intron CG14591 - chr2R_15_6035001 chr2R_6035001 RAL-176 473 chr2R 6096721 6096726 chr2R 6101910 6101924 BS 5 5195 22.5 6.0 14.2 0.3 5203 chr2R 6096721 intron EcR - chr2R 6099322 intron EcR - chr2R 6101924 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-176 474 chr2R 6096727 6096751 chr2R 6101909 6101923 BS 18 5189 8.5 6.0 7.2 2.2 5196 chr2R 6096727 intron EcR - chr2R 6099325 intron EcR - chr2R 6101923 intron EcR - chr2R_18_6095001 chr2R_6095001 RAL-176 475 chr2R 6129324 6129357 chr2R 6129402 6129435 10 78 3.0 1.5 2.2 3.1 111 chr2R 6129324 intron EcR - chr2R 6129380 intron EcR - chr2R 6129435 intron EcR - chr2R_10_6125001 chr2R_6125001 RAL-176 476 chr2R 6168195 6168226 chr2R 6168275 6168306 8 81 2.0 0.0 1.0 4.0 111 chr2R 6168195 intron EcR - chr2R 6168250 intron EcR - chr2R 6168306 intron EcR - chr2R_8_6165001 chr2R_6165001 RAL-176 477 chr2R 6194686 6194703 chr2R 6194769 6194786 11 83 10.5 13.0 11.8 0.9 100 chr2R 6194686 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194786 intron Ptr - chr2R_11_6190001 chr2R_6190001 RAL-176 478 chr2R 3998868 3998872 chr2R 6486843 6486847 5 2487976 32.0 15.5 23.8 0.2 2487979 chr2R 3998868 intergenic not near genes chr2R 5242858 intron Nipped-A - chr2R 6486847 intergenic not near genes chr2R_5_5240001 chr2R_5240001 RAL-176 479 chr2R 6494527 6494551 chr2R 6499288 6499313 F-element 7 4761 3.5 2.5 3.0 1.8 4786 chr2R 6494527 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499313 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-176 480 chr2R 6546717 6546750 chr2R 6546818 6546851 11 101 2.5 3.0 2.8 2.9 134 chr2R 6546717 intron jing + chr2R 6546784 intron jing + chr2R 6546851 intron jing + chr2R_11_6545001 chr2R_6545001 RAL-176 481 chr2R 6706971 6707001 chr2R 6707232 6707262 8 261 3.0 8.0 5.5 1.2 291 chr2R 6706971 intron,intron CG3409 -,CG45092 - chr2R 6707116 intron,intron CG3409 -,CG45092 - chr2R 6707262 intron,intron,3` UTR CG3409 -,CG45092 -,mir-4975 - chr2R_8_6705001 chr2R_6705001 RAL-176 482 chr2R 6738851 6738872 chr2R 6738930 6738954 9 78 7.5 4.5 6.0 1.3 103 chr2R 6738851 intron l(2)01289 - chr2R 6738902 intron l(2)01289 - chr2R 6738954 intron l(2)01289 - chr2R_9_6735001 chr2R_6735001 RAL-176 483 chr2R 6978644 6978671 chr2R 6978827 6978854 17 183 4.0 7.0 5.5 2.6 210 chr2R 6978644 intron vimar - chr2R 6978749 intron vimar - chr2R 6978854 intron vimar - chr2R_17_6975001 chr2R_6975001 RAL-176 484 chr2R 7139949 7139956 chr2R 7141416 7141448 hopper2 4 1485 3.5 13.0 8.2 0.4 1499 chr2R 7139949 intergenic not near genes chr2R 7140698 intergenic not near genes chr2R 7141448 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-176 485 chr2R 7153163 7153191 chr2R 7153248 7153259 17 84 3.5 3.5 3.5 3.8 96 chr2R 7153163 intron,intron pk +,Spn43Ab - chr2R 7153211 intron,intron pk +,Spn43Ab - chr2R 7153259 intron,intron pk +,Spn43Ab - chr2R_17_7150001 chr2R_7150001 RAL-176 486 chr2R 7235830 7235838 chr2R 7240917 7240930 jockey 4 5091 8.5 7.5 8.0 0.4 5100 chr2R 7235830 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240930 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-176 487 chr2R 7235840 7235853 chr2R 7240916 7240945 jockey 8 5090 6.0 6.5 6.2 1.1 5105 chr2R 7235840 intergenic not near genes chr2R 7238392 intergenic not near genes chr2R 7240945 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-176 488 chr2R 7262199 7262208 chr2R 7269260 7269269 297 5 7060 5.0 10.5 7.8 0.6 7070 chr2R 7262199 intergenic not near genes chr2R 7265734 intergenic not near genes chr2R 7269269 intergenic not near genes chr2R_5_7265001 chr2R_7265001 RAL-176 489 chr2R 7434893 7434918 chr2R 7439194 7439219 Juan 12 4301 4.5 10.5 7.5 1.4 4326 chr2R 7434893 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_12_7435001 chr2R_7435001 RAL-176 490 chr2R 7471999 7472012 chr2R 7472066 7472080 5 71 10.0 6.5 8.2 0.5 81 chr2R 7471999 intron Aldh-III - chr2R 7472040 intron Aldh-III - chr2R 7472080 intron Aldh-III - chr2R_5_7470001 chr2R_7470001 RAL-176 491 chr2R 7608408 7608441 chr2R 7613608 7613625 I-element 11 5200 3.0 5.5 4.2 2.1 5217 chr2R 7608408 intron CG1358 - chr2R 7611016 intron CG1358 - chr2R 7613625 intron CG1358 - chr2R_11_7610001 chr2R_7610001 RAL-176 492 chr2R 7642875 7642892 chr2R 7642955 7642972 7 80 4.5 7.0 5.8 1.0 97 chr2R 7642875 intron CG43340 + chr2R 7642924 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_7_7640001 chr2R_7640001 RAL-176 493 chr2R 7714078 7714117 chr2R 7714154 7714193 14 76 2.5 0.0 1.2 6.4 115 chr2R 7714078 exon CG1942 + chr2R 7714136 3` UTR CG1942 + chr2R 7714193 intergenic CG1942 + chr2R_14_7710001 chr2R_7710001 RAL-176 494 chr2R 7728679 7728714 chr2R 7728760 7728792 4 80 0.0 2.0 1.0 2.0 113 chr2R 7728679 intron CG18812 - chr2R 7728736 intron CG18812 - chr2R 7728792 intron CG18812 - chr2R_4_7725001 chr2R_7725001 RAL-176 495 chr2R 7809958 7809986 chr2R 7810055 7810087 17 100 2.0 5.0 3.5 3.8 129 chr2R 7809958 3` UTR sax + chr2R 7810022 3` UTR sax + chr2R 7810087 3` UTR CG1550 - chr2R_17_7810001 chr2R_7810001 RAL-176 496 chr2R 7815677 7815704 chr2R 7822144 7822171 Burdock 8 6467 5.5 10.5 8.0 0.9 6494 chr2R 7815677 intergenic CG1882 + chr2R 7818924 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-176 497 chr2R 7869182 7869206 chr2R 7873968 7873992 Doc 8 4785 7.0 6.0 6.5 1.1 4810 chr2R 7869182 intron Dgk - chr2R 7871587 intron Dgk - chr2R 7873992 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-176 498 chr2R 7913247 7913273 chr2R 7913346 7913372 16 98 5.0 10.0 7.5 1.9 125 chr2R 7913247 intron CG30377 + chr2R 7913310 intron CG30377 + chr2R 7913372 intron CG30377 + chr2R_16_7910001 chr2R_7910001 RAL-176 499 chr2R 7942939 7942957 chr2R 7943193 7943214 4 256 3.0 2.0 2.5 1.1 275 chr2R 7942939 intron CG14764 - chr2R 7943076 intron CG14764 - chr2R 7943214 intron CG14764 - chr2R_4_7940001 chr2R_7940001 RAL-176 500 chr2R 8015672 8015682 chr2R 8017675 8017702 5 2017 2.5 11.0 6.8 0.6 2030 chr2R 8015672 intergenic mir-4981 + chr2R 8016687 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-176 501 chr2R 8026811 8026833 chr2R 8026887 8026908 5 76 2.0 1.5 1.8 1.8 97 chr2R 8026811 intergenic CR45267 + chr2R 8026860 intergenic CR45267 + chr2R 8026908 intergenic CR45267 + chr2R_5_8025001 chr2R_8025001 RAL-176 502 chr2R 8089254 8089281 chr2R 8089340 8089367 13 84 4.0 3.0 3.5 2.9 113 chr2R 8089254 3` UTR sut2 + chr2R 8089310 intergenic sut2 +,sut3 + chr2R 8089367 intergenic sut2 +,sut3 + chr2R_13_8085001 chr2R_8085001 RAL-176 503 chr2R 8160934 8160953 chr2R 8161024 8161043 1360 15 90 7.5 11.5 9.5 1.4 109 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_15_8160001 chr2R_8160001 RAL-176 504 chr2R 8236040 8236062 chr2R 8236121 8236142 5 76 4.5 1.5 3.0 1.2 102 chr2R 8236040 intergenic not near genes chr2R 8236091 intergenic not near genes chr2R 8236142 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-176 505 chr2R 8329450 8329482 chr2R 8329534 8329565 18 82 3.5 6.0 4.8 3.1 115 chr2R 8329450 intron pdm3 + chr2R 8329508 intron pdm3 + chr2R 8329565 intron pdm3 + chr2R_18_8325001 chr2R_8325001 RAL-176 506 chr2R 8330862 8330893 chr2R 8331346 8331378 roo 16 484 3.5 2.0 2.8 4.2 516 chr2R 8330862 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331378 intron pdm3 + chr2R_16_8330001 chr2R_8330001 RAL-176 507 chr2R 8398205 8398243 chr2R 8402986 8403010 Doc 11 4775 5.5 5.0 5.2 1.8 4805 chr2R 8398205 intron CG2121 - chr2R 8400608 intron CG2121 - chr2R 8403010 intron CG2121 - chr2R_11_8400001 chr2R_8400001 RAL-176 508 chr2R 8483983 8483986 chr2R 8484038 8484038 5 66 1.0 1.5 1.2 2.3 55 chr2R 8483983 intron mtt - chr2R 8484010 intron mtt - chr2R 8484038 intron mtt - chr2R_5_8480001 chr2R_8480001 RAL-176 509 chr2R 8518798 8518964 chr2R 12066267 12066400 4 3547452 23.0 0.0 11.5 0.3 3547602 chr2R 8518798 intron mtt - chr2R 10292599 intron CAP + chr2R 12066400 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-176 510 chr2R 8565384 8565407 chr2R 8565462 8565480 11 75 2.5 6.0 4.2 2.1 96 chr2R 8565384 exon Cyp6a14 - chr2R 8565432 exon Cyp6a14 - chr2R 8565480 exon Cyp6a14 - chr2R_11_8565001 chr2R_8565001 RAL-176 511 chr2R 8566030 8566063 chr2R 8566982 8567015 1360 11 952 6.0 3.5 4.8 1.9 985 chr2R 8566030 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567015 5` UTR Cyp6a14 - chr2R_11_8565001 chr2R_8565001 RAL-176 512 chr2R 8635909 8635932 chr2R 8635987 8636009 4 78 0.0 3.5 1.8 1.4 100 chr2R 8635909 intergenic not near genes chr2R 8635959 intergenic not near genes chr2R 8636009 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-176 513 chr2R 8722762 8722791 chr2R 8723003 8723031 pogo 13 236 6.0 6.5 6.2 1.8 269 chr2R 8722762 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723031 intron CG14767 - chr2R_13_8720001 chr2R_8720001 RAL-176 514 chr2R 8764127 8764133 chr2R 8764273 8764282 6 148 7.0 14.5 10.8 0.5 155 chr2R 8764127 intergenic not near genes chr2R 8764204 intergenic not near genes chr2R 8764282 intergenic not near genes chr2R_6_8760001 chr2R_8760001 RAL-176 515 chr2R 9031974 9032010 chr2R 9032052 9032088 19 77 7.0 6.0 6.5 2.5 114 chr2R 9031974 intergenic not near genes chr2R 9032031 intergenic not near genes chr2R 9032088 intergenic not near genes chr2R_19_9030001 chr2R_9030001 RAL-176 516 chr2R 9052708 9052738 chr2R 9052789 9052819 26 80 0.0 10.5 5.2 4.2 111 chr2R 9052708 intron CG13743 - chr2R 9052764 intron CG13743 - chr2R 9052819 intron CG13743 - chr2R_26_9050001 chr2R_9050001 RAL-176 517 chr2R 9055436 9055455 chr2R 9055564 9055579 14 127 6.0 5.0 5.5 2.2 143 chr2R 9055436 intron CG13743 - chr2R 9055508 intron CG13743 - chr2R 9055579 intron CG13743 - chr2R_14_9055001 chr2R_9055001 RAL-176 518 chr2R 9055458 9055466 chr2R 9055563 9055594 4 115 3.0 5.0 4.0 0.8 136 chr2R 9055458 intron CG13743 - chr2R 9055526 intron CG13743 - chr2R 9055594 intron CG13743 - chr2R_4_9055001 chr2R_9055001 RAL-176 519 chr2R 9212692 9212724 chr2R 9213178 9213196 roo 14 484 10.0 8.0 9.0 1.4 504 chr2R 9212692 intergenic CR45309 + chr2R 9212944 intergenic CR45309 + chr2R 9213196 5` UTR CR45309 + chr2R_14_9210001 chr2R_9210001 RAL-176 520 chr2R 9230223 9230242 chr2R 9230303 9230322 35 79 22.0 14.0 18.0 1.8 99 chr2R 9230223 intron hig - chr2R 9230272 intron hig - chr2R 9230322 exon hig - chr2R_35_9230001 chr2R_9230001 RAL-176 521 chr2R 9352255 9352257 chr2R 9361403 9361407 roo 5 9149 9.0 19.5 14.2 0.3 9152 chr2R 9352255 intron CG13954 - chr2R 9356831 intron CG13954 - chr2R 9361407 intron CG13954 - chr2R_5_9355001 chr2R_9355001 RAL-176 522 chr2R 9368131 9368141 chr2R 9368202 9368212 9 74 8.5 0.0 4.2 1.7 81 chr2R 9368131 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368212 intron CG13954 - chr2R_9_9365001 chr2R_9365001 RAL-176 523 chr2R 9412077 9412102 chr2R 9412186 9412213 7 110 6.0 3.5 4.8 1.2 136 chr2R 9412077 intron wun - chr2R 9412145 intron wun - chr2R 9412213 intron wun - chr2R_7_9410001 chr2R_9410001 RAL-176 524 chr2R 9510666 9510698 chr2R 9510782 9510814 18 116 3.0 3.5 3.2 4.3 148 chr2R 9510666 intron brp + chr2R 9510740 intron brp + chr2R 9510814 intron brp + chr2R_18_9510001 chr2R_9510001 RAL-176 525 chr2R 9561825 9561849 chr2R 9561913 9561937 4 88 1.0 1.0 1.0 2.0 112 chr2R 9561825 3` UTR,intron CR45281 -,CG1809 + chr2R 9561881 3` UTR,intron CR45281 -,CG1809 + chr2R 9561937 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-176 526 chr2R 9653257 9653288 chr2R 9653339 9653372 16 84 5.0 3.5 4.2 3.1 115 chr2R 9653257 intron Mmp2 - chr2R 9653314 intron Mmp2 - chr2R 9653372 intron Mmp2 - chr2R_16_9650001 chr2R_9650001 RAL-176 527 chr2R 9770074 9770083 chr2R 9770164 9770164 4 90 4.5 4.5 4.5 0.7 90 chr2R 9770074 intron CG1688 - chr2R 9770119 intron CG1688 - chr2R 9770164 intron CG1688 - chr2R_4_9770001 chr2R_9770001 RAL-176 528 chr2R 9770085 9770088 chr2R 9770163 9770182 5 88 4.0 4.5 4.2 1.0 97 chr2R 9770085 intron CG1688 - chr2R 9770134 intron CG1688 - chr2R 9770182 intron CG1688 - chr2R_5_9770001 chr2R_9770001 RAL-176 529 chr2R 9950303 9950324 chr2R 9950380 9950398 9 75 3.0 3.5 3.2 2.1 95 chr2R 9950303 intron Mef2 - chr2R 9950350 intron Mef2 - chr2R 9950398 intron Mef2 - chr2R_9_9950001 chr2R_9950001 RAL-176 530 chr2R 10005848 10005884 chr2R 10007013 10007025 1360 24 1159 6.0 5.5 5.8 3.5 1177 chr2R 10005848 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007025 intron Pka-R2 - chr2R_24_10005001 chr2R_10005001 RAL-176 531 chr2R 10132201 10132222 chr2R 10132281 10132302 15 80 2.0 11.5 6.8 1.9 101 chr2R 10132201 intron gem + chr2R 10132252 intron gem + chr2R 10132302 intron gem + chr2R_15_10130001 chr2R_10130001 RAL-176 532 chr2R 10155860 10155874 chr2R 10155953 10155968 7 94 4.5 3.0 3.8 1.5 108 chr2R 10155860 intron KCNQ - chr2R 10155914 intron KCNQ - chr2R 10155968 intron,3` UTR KCNQ -,mlt - chr2R_7_10155001 chr2R_10155001 RAL-176 533 chr2R 10168355 10168364 chr2R 10168432 10168440 5 76 6.0 13.0 9.5 0.5 85 chr2R 10168355 intron KCNQ - chr2R 10168398 intron KCNQ - chr2R 10168440 intron KCNQ - chr2R_5_10165001 chr2R_10165001 RAL-176 534 chr2R 10169539 10169564 chr2R 10169619 10169644 11 77 2.5 3.5 3.0 2.8 105 chr2R 10169539 intron KCNQ - chr2R 10169592 intron KCNQ - chr2R 10169644 intron KCNQ - chr2R_11_10165001 chr2R_10165001 RAL-176 535 chr2R 10176886 10176910 chr2R 10186053 10186077 roo 4 9167 1.5 2.5 2.0 1.3 9191 chr2R 10176886 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186077 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-176 536 chr2R 10186117 10186130 chr2R 10186193 10186205 5 76 0.5 1.5 1.0 2.5 88 chr2R 10186117 intron KCNQ - chr2R 10186161 intron KCNQ - chr2R 10186205 intron KCNQ - chr2R_5_10185001 chr2R_10185001 RAL-176 537 chr2R 10266494 10266523 chr2R 10266585 10266597 7 87 10.5 2.0 6.2 1.0 103 chr2R 10266494 intron CG12910 + chr2R 10266546 intron CG12910 + chr2R 10266597 intron CG12910 + chr2R_7_10265001 chr2R_10265001 RAL-176 538 chr2R 10313316 10313338 chr2R 10313410 10313432 4 94 0.0 1.5 0.8 2.2 116 chr2R 10313316 intergenic not near genes chr2R 10313374 intergenic not near genes chr2R 10313432 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-176 539 chr2R 10318518 10318546 chr2R 10318604 10318632 18 86 3.5 3.0 3.2 4.3 114 chr2R 10318518 intron Ndg + chr2R 10318575 intron Ndg + chr2R 10318632 intron Ndg + chr2R_18_10315001 chr2R_10315001 RAL-176 540 chr2R 10387979 10388003 chr2R 10388076 10388093 11 95 0.0 13.5 6.8 1.4 114 chr2R 10387979 intron CG42732 - chr2R 10388036 intron CG42732 - chr2R 10388093 intron CG42732 - chr2R_11_10385001 chr2R_10385001 RAL-176 541 chr2R 10469023 10469055 chr2R 10469149 10469181 25 126 6.5 11.5 9.0 2.5 158 chr2R 10469023 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_25_10465001 chr2R_10465001 RAL-176 542 chr2R 10551147 10551156 chr2R 10551267 10551275 5 120 0.0 0.0 0.0 5.0 128 chr2R 10551147 intergenic not near genes chr2R 10551211 intergenic not near genes chr2R 10551275 intergenic not near genes chr2R_5_10550001 chr2R_10550001 RAL-176 543 chr2R 10585576 10585589 chr2R 10594156 10594171 Tirant 7 8582 4.5 5.5 5.0 1.2 8595 chr2R 10585576 intron psq + chr2R 10589874 intron psq + chr2R 10594171 intron psq + chr2R_7_10585001 chr2R_10585001 RAL-176 544 chr2R 10644060 10644091 chr2R 10644138 10644169 10 78 2.5 2.0 2.2 3.1 109 chr2R 10644060 intron Git - chr2R 10644114 intron Git - chr2R 10644169 intron Git - chr2R_10_10640001 chr2R_10640001 RAL-176 545 chr2R 10765190 10765200 chr2R 10765534 10765538 5 343 7.0 4.5 5.8 0.7 348 chr2R 10765190 intron CG33144 - chr2R 10765364 intron CG33144 - chr2R 10765538 intron CG33144 - chr2R_5_10765001 chr2R_10765001 RAL-176 546 chr2R 10827334 10827351 chr2R 10827422 10827438 11 85 8.0 6.0 7.0 1.4 104 chr2R 10827334 exon CG12325 + chr2R 10827386 3` UTR CG12325 + chr2R 10827438 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-176 547 chr2R 10827352 10827358 chr2R 10827421 10827442 11 80 7.5 6.0 6.8 1.4 90 chr2R 10827352 exon CG12325 + chr2R 10827397 3` UTR CG12325 + chr2R 10827442 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-176 548 chr2R 10834239 10834260 chr2R 10834713 10834733 4 473 46.5 37.0 41.8 0.1 494 chr2R 10834239 intron CG12344 - chr2R 10834486 intron CG12344 - chr2R 10834733 intron CG12344 - chr2R_4_10830001 chr2R_10830001 RAL-176 549 chr2R 10851186 10851214 chr2R 10851270 10851299 16 85 4.5 2.0 3.2 3.8 113 chr2R 10851186 intron CG30015 - chr2R 10851242 intron CG30015 - chr2R 10851299 intron CG30015 - chr2R_16_10850001 chr2R_10850001 RAL-176 550 chr2R 10902154 10902169 chr2R 10902233 10902246 7 79 14.0 10.5 12.2 0.5 92 chr2R 10902154 intergenic not near genes chr2R 10902200 intergenic not near genes chr2R 10902246 intergenic not near genes chr2R_7_10900001 chr2R_10900001 RAL-176 551 chr2R 10959098 10959107 chr2R 10959177 10959186 4 79 1.5 6.0 3.8 0.8 88 chr2R 10959098 intergenic not near genes chr2R 10959142 intergenic not near genes chr2R 10959186 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-176 552 chr2R 10976358 10976383 chr2R 10976441 10976465 10 83 2.0 2.0 2.0 3.3 107 chr2R 10976358 intergenic not near genes chr2R 10976412 intergenic not near genes chr2R 10976465 intergenic not near genes chr2R_10_10975001 chr2R_10975001 RAL-176 553 chr2R 10979664 10979682 chr2R 10980134 10980152 297 5 470 1.0 2.5 1.8 1.8 488 chr2R 10979664 intergenic not near genes chr2R 10979908 intergenic not near genes chr2R 10980152 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-176 554 chr2R 11009812 11009847 chr2R 11018986 11019020 roo 17 9173 1.5 2.5 2.0 5.7 9208 chr2R 11009812 intron luna - chr2R 11014416 intron luna - chr2R 11019020 intron luna - chr2R_17_11010001 chr2R_11010001 RAL-176 555 chr2R 11019880 11019887 chr2R 11024946 11024953 jockey 4 5066 7.5 5.5 6.5 0.5 5073 chr2R 11019880 intron luna - chr2R 11022416 intron luna - chr2R 11024953 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-176 556 chr2R 11019888 11019908 chr2R 11024939 11024974 jockey 5 5061 5.5 5.0 5.2 0.8 5086 chr2R 11019888 intron luna - chr2R 11022431 intron luna - chr2R 11024974 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-176 557 chr2R 11039735 11039746 chr2R 11039815 11039830 4 82 4.5 0.5 2.5 1.1 95 chr2R 11039735 intron luna - chr2R 11039782 intron luna - chr2R 11039830 intron luna - chr2R_4_11035001 chr2R_11035001 RAL-176 558 chr2R 11119703 11119722 chr2R 11119833 11119843 7 129 3.5 0.0 1.8 2.5 140 chr2R 11119703 3` UTR Cyp12d1-p - chr2R 11119773 3` UTR Cyp12d1-p - chr2R 11119843 3` UTR Cyp12d1-p - chr2R_7_11115001 chr2R_11115001 RAL-176 559 chr2R 11179269 11179287 chr2R 11179355 11179372 6 85 0.0 7.0 3.5 1.3 103 chr2R 11179269 intron shn + chr2R 11179320 intron shn + chr2R 11179372 intron shn + chr2R_6_11175001 chr2R_11175001 RAL-176 560 chr2R 11207817 11207846 chr2R 11208007 11208038 BS 14 190 7.5 2.0 4.8 2.4 221 chr2R 11207817 intron shn + chr2R 11207928 intron shn + chr2R 11208038 intron shn + chr2R_14_11205001 chr2R_11205001 RAL-176 561 chr2R 11276805 11276818 chr2R 11276973 11276986 5 168 5.5 7.0 6.2 0.7 181 chr2R 11276805 intergenic not near genes chr2R 11276896 intergenic not near genes chr2R 11276986 intergenic not near genes chr2R_5_11275001 chr2R_11275001 RAL-176 562 chr2R 11344145 11344158 chr2R 11344241 11344254 9 96 0.0 2.5 1.2 4.1 109 chr2R 11344145 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344254 intergenic alphaTry - chr2R_9_11340001 chr2R_11340001 RAL-176 563 chr2R 11368030 11368055 chr2R 11368106 11368131 4 76 1.0 2.0 1.5 1.6 101 chr2R 11368030 intron CG13204 + chr2R 11368080 intron CG13204 + chr2R 11368131 intron CG13204 + chr2R_4_11365001 chr2R_11365001 RAL-176 564 chr2R 11415517 11415551 chr2R 11418665 11418700 opus 9 3148 1.0 4.5 2.8 2.4 3183 chr2R 11415517 intron Drip - chr2R 11417108 intron Drip - chr2R 11418700 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-176 565 chr2R 11472648 11472676 chr2R 11473845 11473873 pogo 10 1196 9.0 4.5 6.8 1.3 1225 chr2R 11472648 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473873 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-176 566 chr2R 11485125 11485135 chr2R 11485201 11485216 6 80 8.5 5.0 6.8 0.8 91 chr2R 11485125 intron inv + chr2R 11485170 intron inv + chr2R 11485216 intron inv + chr2R_6_11485001 chr2R_11485001 RAL-176 567 chr2R 11485137 11485147 chr2R 11485197 11485229 8 77 4.5 3.5 4.0 1.6 92 chr2R 11485137 intron inv + chr2R 11485183 intron inv + chr2R 11485229 intron inv + chr2R_8_11485001 chr2R_11485001 RAL-176 568 chr2R 11672681 11672704 chr2R 11676123 11676153 7 3444 26.5 19.0 22.8 0.3 3472 chr2R 11672681 intron,intron Roc2 -,Tret1-1 + chr2R 11674417 intron,exon Roc2 -,Tret1-1 + chr2R 11676153 intron,intron Roc2 -,Tret1-2 + chr2R_7_11670001 chr2R_11670001 RAL-176 569 chr2R 11677875 11677896 chr2R 11677953 11677974 9 78 3.5 2.0 2.8 2.4 99 chr2R 11677875 intron,exon Roc2 -,Tret1-2 + chr2R 11677924 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677974 intron,3` UTR Roc2 -,Tret1-2 + chr2R_9_11675001 chr2R_11675001 RAL-176 570 chr2R 11822977 11823000 chr2R 11823054 11823073 8 76 4.5 6.0 5.2 1.3 96 chr2R 11822977 intergenic not near genes chr2R 11823025 intergenic not near genes chr2R 11823073 intergenic not near genes chr2R_8_11820001 chr2R_11820001 RAL-176 571 chr2R 11951346 11951371 chr2R 11951423 11951446 10 76 1.5 2.0 1.8 3.6 100 chr2R 11951346 intron CG13188 + chr2R 11951396 intron CG13188 + chr2R 11951446 intron CG13188 + chr2R_10_11950001 chr2R_11950001 RAL-176 572 chr2R 8518778 8518793 chr2R 12066179 12066205 17 3547400 12.0 25.5 18.8 0.9 3547427 chr2R 8518778 intron mtt - chr2R 10292492 intron CAP + chr2R 12066205 intron CG8888 - chr2R_17_10290001 chr2R_10290001 RAL-176 573 chr2R 12096836 12096849 chr2R 12097288 12097301 8 452 5.0 8.0 6.5 1.1 465 chr2R 12096836 intron jeb - chr2R 12097068 intron jeb - chr2R 12097301 intron jeb - chr2R_8_12095001 chr2R_12095001 RAL-176 574 chr2R 12120403 12120437 chr2R 12120485 12120512 27 77 9.0 11.5 10.2 2.4 109 chr2R 12120403 intergenic not near genes chr2R 12120458 intergenic not near genes chr2R 12120512 intergenic not near genes chr2R_27_12120001 chr2R_12120001 RAL-176 575 chr2R 12124829 12124862 chr2R 12124913 12124946 14 84 4.5 3.0 3.8 2.9 117 chr2R 12124829 intergenic not near genes chr2R 12124888 intergenic not near genes chr2R 12124946 intergenic not near genes chr2R_14_12120001 chr2R_12120001 RAL-176 576 chr2R 12187471 12187481 chr2R 12190087 12190124 56 2620 148.0 106.5 127.2 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_56_12185001 chr2R_12185001 RAL-176 577 chr2R 12210131 12210165 chr2R 12210212 12210246 15 81 4.0 4.0 4.0 3.0 115 chr2R 12210131 exon Sr-CII - chr2R 12210188 intron Sr-CII - chr2R 12210246 intron Sr-CII - chr2R_15_12210001 chr2R_12210001 RAL-176 578 chr2R 12236232 12236239 chr2R 12236322 12236330 5 90 5.5 3.0 4.2 1.0 98 chr2R 12236232 intergenic not near genes chr2R 12236281 intergenic not near genes chr2R 12236330 intergenic not near genes chr2R_5_12235001 chr2R_12235001 RAL-176 579 chr2R 12255721 12255751 chr2R 12255840 12255870 5 118 4.5 1.5 3.0 1.2 149 chr2R 12255721 intergenic CG13168 + chr2R 12255796 intergenic CG13168 + chr2R 12255870 intergenic CG13168 + chr2R_5_12255001 chr2R_12255001 RAL-176 580 chr2R 12272325 12272356 chr2R 12272408 12272439 12 82 1.5 6.5 4.0 2.4 114 chr2R 12272325 intron Cam + chr2R 12272382 intron Cam + chr2R 12272439 intron Cam + chr2R_12_12270001 chr2R_12270001 RAL-176 581 chr2R 12363379 12363417 chr2R 12363811 12363849 17 430 2.0 6.5 4.2 3.3 470 chr2R 12363379 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_17_12360001 chr2R_12360001 RAL-176 582 chr2R 12377493 12377527 chr2R 12377615 12377649 20 121 2.5 1.0 1.8 7.1 156 chr2R 12377493 intergenic Cpr49Aa + chr2R 12377571 intergenic Cpr49Aa + chr2R 12377649 intergenic Cpr49Aa + chr2R_20_12375001 chr2R_12375001 RAL-176 583 chr2R 12393374 12393404 chr2R 12395383 12395413 13 2011 29.5 27.5 28.5 0.4 2039 chr2R 12393374 intergenic Or49a + chr2R 12394394 exon Or49a + chr2R 12395413 5` UTR CG30048 + chr2R_13_12390001 chr2R_12390001 RAL-176 584 chr2R 12479150 12479157 chr2R 12479217 12479246 5 80 2.0 6.0 4.0 1.0 96 chr2R 12479150 intron Dh44-R2 + chr2R 12479198 intron Dh44-R2 + chr2R 12479246 intron Dh44-R2 + chr2R_5_12475001 chr2R_12475001 RAL-176 585 chr2R 12481154 12481168 chr2R 12482941 12482949 roo 15 1790 5.0 7.5 6.2 2.1 1795 chr2R 12481154 exon Dh44-R2 + chr2R 12482052 intron Dh44-R2 + chr2R 12482949 intron Dh44-R2 + chr2R_15_12480001 chr2R_12480001 RAL-176 586 chr2R 12501704 12501724 chr2R 12503848 12503885 Rt1c 16 2156 10.5 10.5 10.5 1.4 2181 chr2R 12501704 intron fdl - chr2R 12502794 intron fdl - chr2R 12503885 intron fdl - chr2R_16_12500001 chr2R_12500001 RAL-176 587 chr2R 12506569 12506581 chr2R 12506645 12506657 7 75 2.5 13.5 8.0 0.8 88 chr2R 12506569 intron fdl - chr2R 12506613 intron fdl - chr2R 12506657 intron fdl - chr2R_7_12505001 chr2R_12505001 RAL-176 588 chr2R 12535837 12535874 chr2R 12535918 12535955 14 80 9.0 5.5 7.2 1.7 118 chr2R 12535837 intron fra + chr2R 12535896 intron fra + chr2R 12535955 intron fra + chr2R_14_12535001 chr2R_12535001 RAL-176 589 chr2R 12664505 12664509 chr2R 22524386 22524386 4 9859880 17.0 8.5 12.8 0.3 9859881 chr2R 12664505 intron nemy - chr2R 17594446 intron lack + chr2R 22524386 intron px - chr2R_4_17590001 chr2R_17590001 RAL-176 590 chr2R 12789294 12789328 chr2R 12797657 12797674 roo 14 8356 3.5 5.0 4.2 2.7 8380 chr2R 12789294 intron,3` UTR sca +,CR45137 - chr2R 12793484 intron,intron sca +,CR45137 - chr2R 12797674 intron,3` UTR sca +,CR45137 - chr2R_14_12790001 chr2R_12790001 RAL-176 591 chr2R 12819456 12819479 chr2R 12824523 12824548 jockey 8 5068 6.0 10.0 8.0 0.9 5092 chr2R 12819456 intergenic not near genes chr2R 12822002 intergenic not near genes chr2R 12824548 intergenic not near genes chr2R_8_12820001 chr2R_12820001 RAL-176 592 chr2R 12834159 12834186 chr2R 12834242 12834269 5 83 0.5 0.5 0.5 3.3 110 chr2R 12834159 intergenic not near genes chr2R 12834214 intergenic not near genes chr2R 12834269 intergenic not near genes chr2R_5_12830001 chr2R_12830001 RAL-176 593 chr2R 12897463 12897485 chr2R 12897551 12897576 15 91 3.5 0.0 1.8 5.4 113 chr2R 12897463 intron vg + chr2R 12897520 intron vg + chr2R 12897576 intron vg + chr2R_15_12895001 chr2R_12895001 RAL-176 594 chr2R 12993320 12993349 chr2R 12993405 12993431 7 84 2.5 0.0 1.2 3.2 111 chr2R 12993320 intergenic not near genes chr2R 12993376 intergenic not near genes chr2R 12993431 intergenic CG33798 + chr2R_7_12990001 chr2R_12990001 RAL-176 595 chr2R 13023095 13023110 chr2R 13023182 13023197 7 86 12.0 5.5 8.8 0.7 102 chr2R 13023095 intergenic not near genes chr2R 13023146 intergenic not near genes chr2R 13023197 intergenic not near genes chr2R_7_13020001 chr2R_13020001 RAL-176 596 chr2R 13136839 13136870 chr2R 13141637 13141668 Doc 19 4797 9.0 7.5 8.2 2.1 4829 chr2R 13136839 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_19_13135001 chr2R_13135001 RAL-176 597 chr2R 13162777 13162799 chr2R 13162861 13162883 8 84 2.0 0.0 1.0 4.0 106 chr2R 13162777 3` UTR Nrk + chr2R 13162830 3` UTR Nrk + chr2R 13162883 3` UTR Nrk + chr2R_8_13160001 chr2R_13160001 RAL-176 598 chr2R 13218311 13218402 chr2R 13218394 13218479 4 80 0.0 0.0 0.0 4.0 168 chr2R 13218311 intron CG4630 - chr2R 13218395 intron CG4630 - chr2R 13218479 intron CG4630 - chr2R_4_13215001 chr2R_13215001 RAL-176 599 chr2R 13220537 13220544 chr2R 13220636 13220643 5 99 0.5 8.5 4.5 0.9 106 chr2R 13220537 intron CG17059 + chr2R 13220590 intron CG17059 + chr2R 13220643 intron CG17059 + chr2R_5_13220001 chr2R_13220001 RAL-176 600 chr2R 13345582 13345617 chr2R 13346153 13346188 24 570 6.0 9.5 7.8 2.7 606 chr2R 13345582 intron CR44206 - chr2R 13345885 intron CR44206 - chr2R 13346188 intron CR44206 - chr2R_24_13345001 chr2R_13345001 RAL-176 601 chr2R 13372185 13372218 chr2R 13372263 13372297 14 77 5.0 4.5 4.8 2.4 112 chr2R 13372185 intergenic not near genes chr2R 13372241 intergenic not near genes chr2R 13372297 intergenic not near genes chr2R_14_13370001 chr2R_13370001 RAL-176 602 chr2R 13431491 13431507 chr2R 13431569 13431585 9 79 4.0 3.5 3.8 1.9 94 chr2R 13431491 intron CG42321 - chr2R 13431538 intron CG42321 - chr2R 13431585 intron CG42321 - chr2R_9_13430001 chr2R_13430001 RAL-176 603 chr2R 13432938 13432969 chr2R 13433014 13433044 7 76 1.0 1.5 1.2 3.2 106 chr2R 13432938 intron CG42321 - chr2R 13432991 intron CG42321 - chr2R 13433044 intron,5` UTR CG42321 -,CG30065 + chr2R_7_13430001 chr2R_13430001 RAL-176 604 chr2R 13554766 13554769 chr2R 13554851 13554854 4 85 0.0 5.0 2.5 1.1 88 chr2R 13554766 intron Roe1 + chr2R 13554810 intron Roe1 + chr2R 13554854 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-176 605 chr2R 13566258 13566291 chr2R 13566338 13566371 22 79 5.5 0.5 3.0 5.5 113 chr2R 13566258 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_22_13565001 chr2R_13565001 RAL-176 606 chr2R 13580500 13580529 chr2R 13580847 13580879 jockey 10 348 1.5 7.5 4.5 1.8 379 chr2R 13580500 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_10_13580001 chr2R_13580001 RAL-176 607 chr2R 13582636 13582671 chr2R 13582711 13582747 21 75 5.0 4.0 4.5 3.8 111 chr2R 13582636 intron,intron CG6191 -,CG45088 - chr2R 13582692 intron,intron CG6191 -,CG45088 - chr2R 13582747 intron,intron CG6191 -,CG45088 - chr2R_21_13580001 chr2R_13580001 RAL-176 608 chr2R 13597783 13597796 chr2R 16536126 16536126 5 2938339 8.5 31.5 20.0 0.2 2938343 chr2R 13597783 exon S-Lap5 + chr2R 15066954 intergenic not near genes chr2R 16536126 exon loopin-1 + chr2R_5_15065001 chr2R_15065001 RAL-176 609 chr2R 13608275 13608301 chr2R 13608358 13608385 14 81 2.0 6.5 4.2 2.7 110 chr2R 13608275 intergenic CG12464 - chr2R 13608330 intergenic CG12464 - chr2R 13608385 intergenic CG12464 - chr2R_14_13605001 chr2R_13605001 RAL-176 610 chr2R 13677554 13677589 chr2R 13677642 13677677 17 83 5.0 6.5 5.8 2.5 123 chr2R 13677554 intron fas + chr2R 13677616 intron fas + chr2R 13677677 intron fas + chr2R_17_13675001 chr2R_13675001 RAL-176 611 chr2R 13692318 13692351 chr2R 13692402 13692435 9 84 2.5 4.0 3.2 2.1 117 chr2R 13692318 intron,intron fas +,CG6220 - chr2R 13692376 intron,intron fas +,CG6220 - chr2R 13692435 intron,intron fas +,CG6220 - chr2R_9_13690001 chr2R_13690001 RAL-176 612 chr2R 13768981 13769005 chr2R 13769079 13769104 12 98 5.0 7.0 6.0 1.7 123 chr2R 13768981 intergenic not near genes chr2R 13769042 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_12_13765001 chr2R_13765001 RAL-176 613 chr2R 13790331 13790341 chr2R 13790407 13790417 4 76 5.0 0.0 2.5 1.1 86 chr2R 13790331 intergenic not near genes chr2R 13790374 intergenic not near genes chr2R 13790417 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-176 614 chr2R 13793152 13793160 chr2R 13793225 13793236 5 76 21.0 8.5 14.8 0.3 84 chr2R 13793152 intergenic not near genes chr2R 13793194 intergenic not near genes chr2R 13793236 intergenic not near genes chr2R_5_13790001 chr2R_13790001 RAL-176 615 chr2R 13905622 13905635 chr2R 13907601 13907617 Rt1a 7 1981 0.0 11.0 5.5 1.1 1995 chr2R 13905622 intron shot - chr2R 13906620 intron shot - chr2R 13907617 intron shot - chr2R_7_13905001 chr2R_13905001 RAL-176 616 chr2R 14076165 14076197 chr2R 14076250 14076282 16 85 3.0 2.0 2.5 4.6 117 chr2R 14076165 intron Prosap - chr2R 14076224 intron Prosap - chr2R 14076282 intron Prosap - chr2R_16_14075001 chr2R_14075001 RAL-176 617 chr2R 14093438 14093446 chr2R 14109584 14109597 6 16150 8.0 1.0 4.5 1.1 16159 chr2R 14093438 intron Prosap - chr2R 14101518 intron Prosap - chr2R 14109597 intron Prosap - chr2R_6_14100001 chr2R_14100001 RAL-176 618 chr2R 14175985 14176002 chr2R 14176295 14176312 10 309 3.5 6.0 4.8 1.7 327 chr2R 14175985 intron cg + chr2R 14176148 intron cg + chr2R 14176312 intron cg + chr2R_10_14175001 chr2R_14175001 RAL-176 619 chr2R 14277582 14277606 chr2R 14277664 14277688 8 82 3.0 3.0 3.0 2.0 106 chr2R 14277582 5` UTR Ih + chr2R 14277635 5` UTR Ih + chr2R 14277688 5` UTR Ih + chr2R_8_14275001 chr2R_14275001 RAL-176 620 chr2R 14285044 14285049 chr2R 14285139 14285146 5 97 2.5 5.0 3.8 1.0 102 chr2R 14285044 intron Ih + chr2R 14285095 intron Ih + chr2R 14285146 intron Ih + chr2R_5_14285001 chr2R_14285001 RAL-176 621 chr2R 14333095 14333103 chr2R 14333191 14333199 8 96 0.0 1.0 0.5 5.3 104 chr2R 14333095 intron Shroom + chr2R 14333147 intron Shroom + chr2R 14333199 intron Shroom + chr2R_8_14330001 chr2R_14330001 RAL-176 622 chr2R 14357555 14357572 chr2R 14357645 14357662 5 90 5.0 2.5 3.8 1.0 107 chr2R 14357555 intergenic CG8617 -,Arc1 - chr2R 14357608 intergenic Arc1 -,CG8617 - chr2R 14357662 intergenic Arc1 -,CG8617 - chr2R_5_14355001 chr2R_14355001 RAL-176 623 chr2R 14392886 14392915 chr2R 14392970 14392999 8 84 1.0 3.0 2.0 2.7 113 chr2R 14392886 intergenic not near genes chr2R 14392942 intergenic not near genes chr2R 14392999 intergenic not near genes chr2R_8_14390001 chr2R_14390001 RAL-176 624 chr2R 14393865 14393899 chr2R 14393950 14393984 19 84 9.5 2.0 5.8 2.8 119 chr2R 14393865 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_19_14390001 chr2R_14390001 RAL-176 625 chr2R 14394232 14394237 chr2R 14399019 14399026 Doc 5 4789 8.0 1.0 4.5 0.9 4794 chr2R 14394232 intergenic not near genes chr2R 14396629 intergenic not near genes chr2R 14399026 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-176 626 chr2R 14405429 14405452 chr2R 14405789 14405814 10 361 2.5 3.5 3.0 2.5 385 chr2R 14405429 intergenic not near genes chr2R 14405622 intergenic not near genes chr2R 14405814 intergenic not near genes chr2R_10_14405001 chr2R_14405001 RAL-176 627 chr2R 14438836 14438849 chr2R 14438920 14438927 8 82 12.5 3.0 7.8 0.9 91 chr2R 14438836 intron Oaz + chr2R 14438882 intron Oaz + chr2R 14438927 intron Oaz + chr2R_8_14435001 chr2R_14435001 RAL-176 628 chr2R 14467306 14467324 chr2R 14476464 14476482 roo 9 9158 7.5 8.0 7.8 1.0 9176 chr2R 14467306 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-176 629 chr2R 14497415 14497420 chr2R 14498575 14498585 1360 4 1164 0.5 2.5 1.5 1.6 1170 chr2R 14497415 3` UTR Cpsf160 - chr2R 14498000 intron Cpsf160 - chr2R 14498585 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-176 630 chr2R 14538967 14538988 chr2R 14539038 14539050 9 74 11.5 7.0 9.2 0.9 83 chr2R 14538967 intron ttv + chr2R 14539008 intron ttv + chr2R 14539050 intron ttv + chr2R_9_14535001 chr2R_14535001 RAL-176 631 chr2R 14565556 14565589 chr2R 14565633 14565666 20 76 2.0 3.0 2.5 5.7 110 chr2R 14565556 intron ttv + chr2R 14565611 intron ttv + chr2R 14565666 intron ttv + chr2R_20_14565001 chr2R_14565001 RAL-176 632 chr2R 14576866 14576888 chr2R 14577028 14577050 15 161 8.0 5.5 6.8 1.9 184 chr2R 14576866 intron ttv + chr2R 14576958 intron ttv + chr2R 14577050 intron ttv + chr2R_15_14575001 chr2R_14575001 RAL-176 633 chr2R 14702862 14702883 chr2R 14703000 14703021 9 138 2.0 3.0 2.5 2.6 159 chr2R 14702862 intron mspo - chr2R 14702942 intron mspo - chr2R 14703021 intron mspo - chr2R_9_14700001 chr2R_14700001 RAL-176 634 chr2R 14718114 14718147 chr2R 14718200 14718233 22 84 6.5 4.5 5.5 3.4 119 chr2R 14718114 intergenic not near genes chr2R 14718174 intergenic not near genes chr2R 14718233 intergenic not near genes chr2R_22_14715001 chr2R_14715001 RAL-176 635 chr2R 14850055 14850087 chr2R 14850161 14850191 13 103 36.0 33.0 34.5 0.4 136 chr2R 14850055 exon SMC2 - chr2R 14850123 intron SMC2 - chr2R 14850191 exon SMC2 - chr2R_13_14850001 chr2R_14850001 RAL-176 636 chr2R 14855031 14855065 chr2R 14855121 14855156 20 89 6.5 1.5 4.0 4.0 125 chr2R 14855031 5` UTR Ciao1 - chr2R 14855094 intergenic Ciao1 -,HPS1 + chr2R 14855156 intergenic Ciao1 -,HPS1 + chr2R_20_14855001 chr2R_14855001 RAL-176 637 chr2R 14889211 14889226 chr2R 14897819 14897834 Max-element 6 8608 5.0 0.0 2.5 1.7 8623 chr2R 14889211 intergenic Cyp6a8 - chr2R 14893522 intergenic not near genes chr2R 14897834 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-176 638 chr2R 14906495 14906517 chr2R 14906605 14906627 7 110 0.5 3.5 2.0 2.3 132 chr2R 14906495 intron CG10249 - chr2R 14906561 intron CG10249 - chr2R 14906627 intron CG10249 - chr2R_7_14905001 chr2R_14905001 RAL-176 639 chr2R 14911700 14911728 chr2R 14911823 14911851 17 123 5.0 4.0 4.5 3.1 151 chr2R 14911700 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_17_14910001 chr2R_14910001 RAL-176 640 chr2R 14919046 14919072 chr2R 14919126 14919150 7 80 1.5 0.0 0.8 3.9 104 chr2R 14919046 intron CG10249 - chr2R 14919098 intron CG10249 - chr2R 14919150 intron CG10249 - chr2R_7_14915001 chr2R_14915001 RAL-176 641 chr2R 14955670 14955700 chr2R 14955759 14955760 4 78 1.5 0.0 0.8 2.2 90 chr2R 14955670 intron aPKC - chr2R 14955715 intron aPKC - chr2R 14955760 intron aPKC - chr2R_4_14955001 chr2R_14955001 RAL-176 642 chr2R 14968442 14968465 chr2R 14968523 14968546 11 79 10.5 7.0 8.8 1.1 104 chr2R 14968442 intron ckn + chr2R 14968494 intron ckn + chr2R 14968546 intron ckn + chr2R_11_14965001 chr2R_14965001 RAL-176 643 chr2R 15004726 15004764 chr2R 15005055 15005097 jockey 9 330 1.5 2.0 1.8 3.2 371 chr2R 15004726 intergenic not near genes chr2R 15004912 intergenic not near genes chr2R 15005097 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-176 644 chr2R 15015458 15015484 chr2R 15022880 15022907 mdg1 9 7423 2.5 1.5 2.0 3.0 7449 chr2R 15015458 intron hbs + chr2R 15019182 intron hbs + chr2R 15022907 intron hbs + chr2R_9_15015001 chr2R_15015001 RAL-176 645 chr2R 15065622 15065650 chr2R 15065694 15065728 14 72 5.0 3.0 4.0 2.8 106 chr2R 15065622 intergenic not near genes chr2R 15065675 intergenic not near genes chr2R 15065728 intergenic not near genes chr2R_14_15065001 chr2R_15065001 RAL-176 646 chr2R 15094881 15094917 chr2R 15094958 15094994 12 77 2.0 1.0 1.5 4.8 113 chr2R 15094881 intergenic not near genes chr2R 15094938 intergenic not near genes chr2R 15094994 intergenic not near genes chr2R_12_15090001 chr2R_15090001 RAL-176 647 chr2R 15119316 15119350 chr2R 15127797 15127831 Tirant 15 8477 4.5 4.5 4.5 2.7 8515 chr2R 15119316 intron chn + chr2R 15123574 intron chn + chr2R 15127831 intron chn + chr2R_15_15120001 chr2R_15120001 RAL-176 648 chr2R 15132686 15132705 chr2R 15132779 15132796 6 90 11.5 1.0 6.2 0.8 110 chr2R 15132686 intron chn + chr2R 15132741 intron chn + chr2R 15132796 intron chn + chr2R_6_15130001 chr2R_15130001 RAL-176 649 chr2R 15156319 15156321 chr2R 15156402 15156404 5 83 9.5 4.0 6.8 0.6 85 chr2R 15156319 intron igl + chr2R 15156362 intron igl + chr2R 15156404 intron igl + chr2R_5_15155001 chr2R_15155001 RAL-176 650 chr2R 15169481 15169496 chr2R 15169561 15169576 10 78 0.5 7.0 3.8 2.1 95 chr2R 15169481 intron igl + chr2R 15169528 intron igl + chr2R 15169576 intron igl + chr2R_10_15165001 chr2R_15165001 RAL-176 651 chr2R 15187880 15187917 chr2R 15187958 15187992 29 77 2.0 5.5 3.8 6.0 112 chr2R 15187880 intron igl + chr2R 15187936 intron igl + chr2R 15187992 intron igl + chr2R_29_15185001 chr2R_15185001 RAL-176 652 chr2R 15235086 15235090 chr2R 15235214 15235218 4 128 1.0 4.5 2.8 1.1 132 chr2R 15235086 intron Fs - chr2R 15235152 intron Fs - chr2R 15235218 intron Fs - chr2R_4_15235001 chr2R_15235001 RAL-176 653 chr2R 15296160 15296166 chr2R 15296243 15296243 8 82 4.5 5.0 4.8 1.4 83 chr2R 15296160 intron Trpm - chr2R 15296202 intron Trpm - chr2R 15296243 intron Trpm - chr2R_8_15295001 chr2R_15295001 RAL-176 654 chr2R 15296168 15296170 chr2R 15296242 15296253 5 79 4.0 4.5 4.2 1.0 85 chr2R 15296168 intron Trpm - chr2R 15296210 intron Trpm - chr2R 15296253 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-176 655 chr2R 15351453 15351478 chr2R 15351571 15351596 9 117 2.5 2.0 2.2 2.8 143 chr2R 15351453 intron unc-5 + chr2R 15351524 intron unc-5 + chr2R 15351596 intron unc-5 + chr2R_9_15350001 chr2R_15350001 RAL-176 656 chr2R 15534691 15534697 chr2R 15534770 15534776 5 79 5.5 5.0 5.2 0.8 85 chr2R 15534691 intron CG30471 + chr2R 15534734 intron CG30471 + chr2R 15534776 intron CG30471 + chr2R_5_15530001 chr2R_15530001 RAL-176 657 chr2R 15535985 15536000 chr2R 15538831 15538854 4 2846 32.0 65.0 48.5 0.1 2869 chr2R 15535985 exon CG30471 + chr2R 15537420 exon CG30471 + chr2R 15538854 exon CG30467 + chr2R_4_15535001 chr2R_15535001 RAL-176 658 chr2R 15573020 15573048 chr2R 15573132 15573155 4 110 3.0 0.0 1.5 1.6 135 chr2R 15573020 3` UTR CG30466 + chr2R 15573088 3` UTR CG30466 + chr2R 15573155 3` UTR,3` UTR CG30466 +,CG8204 - chr2R_4_15570001 chr2R_15570001 RAL-176 659 chr2R 15655983 15656014 chr2R 15656063 15656094 23 80 6.0 9.5 7.8 2.6 111 chr2R 15655983 intron CG42524 + chr2R 15656038 intron CG42524 + chr2R 15656094 intron CG42524 + chr2R_23_15655001 chr2R_15655001 RAL-176 660 chr2R 15685366 15685395 chr2R 15685469 15685498 9 102 4.5 2.5 3.5 2.0 132 chr2R 15685366 intron,exon Ranbp11 +,CG30082 - chr2R 15685432 intron,intron Ranbp11 +,CG30082 - chr2R 15685498 intron,intron Ranbp11 +,CG30082 - chr2R_9_15685001 chr2R_15685001 RAL-176 661 chr2R 15697897 15697926 chr2R 15697978 15698007 8 81 4.0 0.5 2.2 2.5 110 chr2R 15697897 exon CG33462 + chr2R 15697952 3` UTR CG33462 + chr2R 15698007 3` UTR CG33462 + chr2R_8_15695001 chr2R_15695001 RAL-176 662 chr2R 15749292 15749320 chr2R 15749376 15749404 12 81 4.5 8.0 6.2 1.7 112 chr2R 15749292 intron CG30089 + chr2R 15749348 intron CG30089 + chr2R 15749404 intron CG30089 + chr2R_12_15745001 chr2R_15745001 RAL-176 663 chr2R 15800565 15800595 chr2R 15801154 15801173 13 586 2.5 2.5 2.5 3.7 608 chr2R 15800565 intron,intron Zasp52 -,tun + chr2R 15800869 intron,intron Zasp52 -,tun + chr2R 15801173 intron,intron Zasp52 -,tun + chr2R_13_15800001 chr2R_15800001 RAL-176 664 chr2R 15873743 15873766 chr2R 15873823 15873853 18 86 3.5 4.5 4.0 3.6 110 chr2R 15873743 intron sli - chr2R 15873798 intron sli - chr2R 15873853 intron sli - chr2R_18_15870001 chr2R_15870001 RAL-176 665 chr2R 16054955 16054961 chr2R 16055033 16055044 4 80 20.5 30.0 25.2 0.2 89 chr2R 16054955 intron CG8405 + chr2R 16055000 intron CG8405 + chr2R 16055044 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-176 666 chr2R 16245606 16245616 chr2R 16245870 16245883 9 267 5.0 8.0 6.5 1.2 277 chr2R 16245606 intron CngA - chr2R 16245744 intron CngA - chr2R 16245883 intron CngA - chr2R_9_16245001 chr2R_16245001 RAL-176 667 chr2R 16380121 16380158 chr2R 16380218 16380256 13 98 2.0 1.0 1.5 5.2 135 chr2R 16380121 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380188 3` UTR CR45317 - chr2R 16380256 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_13_16380001 chr2R_16380001 RAL-176 668 chr2R 16381211 16381215 chr2R 16381446 16381448 5 234 0.0 5.0 2.5 1.4 237 chr2R 16381211 3` UTR CG43187 + chr2R 16381330 3` UTR CG43187 + chr2R 16381448 3` UTR CG43187 + chr2R_5_16380001 chr2R_16380001 RAL-176 669 chr2R 16381217 16381242 chr2R 16381444 16381452 11 223 0.0 5.0 2.5 3.1 235 chr2R 16381217 3` UTR CG43187 + chr2R 16381334 3` UTR CG43187 + chr2R 16381452 3` UTR CG43187 + chr2R_11_16380001 chr2R_16380001 RAL-176 670 chr2R 16511798 16511829 chr2R 16511960 16511991 12 158 4.5 0.0 2.2 3.8 193 chr2R 16511798 intron Sema-2a + chr2R 16511894 intron Sema-2a + chr2R 16511991 intron Sema-2a + chr2R_12_16510001 chr2R_16510001 RAL-176 671 chr2R 16539637 16539662 chr2R 16544846 16544871 copia 9 5209 5.0 1.0 3.0 2.2 5234 chr2R 16539637 intergenic not near genes chr2R 16542254 intergenic not near genes chr2R 16544871 intergenic not near genes chr2R_9_16540001 chr2R_16540001 RAL-176 672 chr2R 16591588 16591616 chr2R 16592021 16592050 11 433 4.0 7.0 5.5 1.7 462 chr2R 16591588 intron CG8306 - chr2R 16591819 intron CG8306 - chr2R 16592050 intron CG8306 - chr2R_11_16590001 chr2R_16590001 RAL-176 673 chr2R 16617060 16617089 chr2R 16617139 16617168 18 78 5.5 7.0 6.2 2.5 108 chr2R 16617060 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617168 intron CG5065 + chr2R_18_16615001 chr2R_16615001 RAL-176 674 chr2R 16619970 16620005 chr2R 16620051 16620086 31 79 3.5 0.5 2.0 10.3 116 chr2R 16619970 intron CG5065 + chr2R 16620028 intron CG5065 + chr2R 16620086 intron CG5065 + chr2R_31_16620001 chr2R_16620001 RAL-176 675 chr2R 16676557 16676586 chr2R 16676703 16676732 19 145 9.0 4.0 6.5 2.5 175 chr2R 16676557 intron CG30463 - chr2R 16676644 intron CG30463 - chr2R 16676732 intron CG30463 - chr2R_19_16675001 chr2R_16675001 RAL-176 676 chr2R 16775648 16775670 chr2R 16775911 16775934 4 264 2.5 3.0 2.8 1.1 286 chr2R 16775648 3` UTR Arp53D + chr2R 16775791 intergenic Arp53D + chr2R 16775934 intergenic Arp53D + chr2R_4_16775001 chr2R_16775001 RAL-176 677 chr2R 16893778 16893789 chr2R 16893861 16893872 9 82 15.5 8.0 11.8 0.7 94 chr2R 16893778 intron CG8910 - chr2R 16893825 intron CG8910 - chr2R 16893872 intron CG8910 - chr2R_9_16890001 chr2R_16890001 RAL-176 678 chr2R 16893793 16893805 chr2R 16893860 16893886 9 76 3.5 7.0 5.2 1.5 93 chr2R 16893793 intron CG8910 - chr2R 16893840 intron CG8910 - chr2R 16893886 intron CG8910 - chr2R_9_16890001 chr2R_16890001 RAL-176 679 chr2R 16983630 16983660 chr2R 16983707 16983740 11 79 0.5 3.0 1.8 3.9 110 chr2R 16983630 intron Cbp53E + chr2R 16983685 intron Cbp53E + chr2R 16983740 intron Cbp53E + chr2R_11_16980001 chr2R_16980001 RAL-176 680 chr2R 17147243 17147267 chr2R 17152274 17152298 jockey 13 5031 6.5 8.0 7.2 1.6 5055 chr2R 17147243 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152298 intergenic not near genes chr2R_13_17145001 chr2R_17145001 RAL-176 681 chr2R 17152928 17152955 chr2R 17153020 17153026 4 88 1.0 3.0 2.0 1.3 98 chr2R 17152928 intergenic not near genes chr2R 17152977 intergenic not near genes chr2R 17153026 intergenic not near genes chr2R_4_17150001 chr2R_17150001 RAL-176 682 chr2R 17161355 17161362 chr2R 17161561 17161569 5 206 13.0 0.0 6.5 0.7 214 chr2R 17161355 intergenic not near genes chr2R 17161462 intergenic not near genes chr2R 17161569 intergenic not near genes chr2R_5_17160001 chr2R_17160001 RAL-176 683 chr2R 17162325 17162347 chr2R 17162410 17162432 10 85 7.5 5.0 6.2 1.4 107 chr2R 17162325 intergenic not near genes chr2R 17162378 intergenic not near genes chr2R 17162432 intergenic not near genes chr2R_10_17160001 chr2R_17160001 RAL-176 684 chr2R 17236509 17236541 chr2R 17241713 17241745 copia 19 5204 1.0 3.5 2.2 5.9 5236 chr2R 17236509 intron mbl + chr2R 17239127 intron mbl + chr2R 17241745 intron mbl + chr2R_19_17235001 chr2R_17235001 RAL-176 685 chr2R 17263319 17263327 chr2R 17263399 17263407 4 80 0.0 1.0 0.5 2.7 88 chr2R 17263319 intron mbl + chr2R 17263363 intron mbl + chr2R 17263407 intron mbl + chr2R_4_17260001 chr2R_17260001 RAL-176 686 chr2R 17277237 17277241 chr2R 17277644 17277649 jockey 4 408 1.5 7.0 4.2 0.8 412 chr2R 17277237 intron mbl + chr2R 17277443 intron mbl + chr2R 17277649 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-176 687 chr2R 17331709 17331720 chr2R 17331785 17331796 5 75 0.0 3.0 1.5 2.0 87 chr2R 17331709 intron mbl + chr2R 17331752 intron mbl + chr2R 17331796 intron mbl + chr2R_5_17330001 chr2R_17330001 RAL-176 688 chr2R 17389267 17389304 chr2R 17389358 17389395 17 87 4.0 5.0 4.5 3.1 128 chr2R 17389267 intergenic CR44344 - chr2R 17389331 intergenic CR44344 - chr2R 17389395 intergenic CR44344 - chr2R_17_17385001 chr2R_17385001 RAL-176 689 chr2R 17395283 17395317 chr2R 17395361 17395369 6 73 0.0 1.5 0.8 3.3 86 chr2R 17395283 intron Sip1 + chr2R 17395326 intron Sip1 + chr2R 17395369 intron Sip1 + chr2R_6_17395001 chr2R_17395001 RAL-176 690 chr2R 17478850 17478858 chr2R 17478927 17478936 5 78 2.5 8.5 5.5 0.8 86 chr2R 17478850 3` UTR,intron CG43110 -,veil + chr2R 17478893 3` UTR,intron CG43110 -,veil + chr2R 17478936 3` UTR,intron CG43110 -,veil + chr2R_5_17475001 chr2R_17475001 RAL-176 691 chr2R 17478860 17478865 chr2R 17478917 17478943 7 74 2.5 6.0 4.2 1.3 83 chr2R 17478860 3` UTR,intron CG43110 -,veil + chr2R 17478902 3` UTR,intron CG43110 -,veil + chr2R 17478943 3` UTR,intron CG43110 -,veil + chr2R_7_17475001 chr2R_17475001 RAL-176 692 chr2R 17485919 17485925 chr2R 17490687 17490694 F-element 4 4769 0.0 0.0 0.0 4.0 4775 chr2R 17485919 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488306 intron NT5E-2 + chr2R 17490694 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-176 693 chr2R 17640112 17640136 chr2R 17640346 17640370 12 233 2.5 8.5 5.5 1.8 258 chr2R 17640112 intergenic not near genes chr2R 17640241 intergenic not near genes chr2R 17640370 intergenic not near genes chr2R_12_17640001 chr2R_17640001 RAL-176 694 chr2R 17784028 17784057 chr2R 17784269 17784298 pogo 16 240 6.5 11.5 9.0 1.6 270 chr2R 17784028 intergenic mir-31a - chr2R 17784163 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_16_17780001 chr2R_17780001 RAL-176 695 chr2R 17835038 17835046 chr2R 17835132 17835140 6 94 9.0 3.0 6.0 0.9 102 chr2R 17835038 intron grh + chr2R 17835089 intron grh + chr2R 17835140 intron grh + chr2R_6_17835001 chr2R_17835001 RAL-176 696 chr2R 17835048 17835061 chr2R 17835130 17835155 5 91 5.5 3.0 4.2 1.0 107 chr2R 17835048 intron grh + chr2R 17835102 intron grh + chr2R 17835155 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-176 697 chr2R 17837192 17837212 chr2R 17837282 17837302 5 90 0.0 3.0 1.5 2.0 110 chr2R 17837192 intron grh + chr2R 17837247 intron grh + chr2R 17837302 intron grh + chr2R_5_17835001 chr2R_17835001 RAL-176 698 chr2R 17843239 17843240 chr2R 17843317 17843328 4 85 0.0 6.0 3.0 1.0 89 chr2R 17843239 intergenic olf186-F + chr2R 17843284 intergenic olf186-F + chr2R 17843328 intergenic olf186-F + chr2R_4_17840001 chr2R_17840001 RAL-176 699 chr2R 17844857 17844888 chr2R 17844949 17844980 6 90 3.5 1.5 2.5 1.7 123 chr2R 17844857 intron olf186-F + chr2R 17844918 intron olf186-F + chr2R 17844980 intron olf186-F + chr2R_6_17840001 chr2R_17840001 RAL-176 700 chr2R 17982924 17982945 chr2R 17983008 17983030 6 85 4.5 0.5 2.5 1.7 106 chr2R 17982924 intron dpr13 - chr2R 17982977 intron dpr13 - chr2R 17983030 intron dpr13 - chr2R_6_17980001 chr2R_17980001 RAL-176 701 chr2R 17997155 17997194 chr2R 17997237 17997276 7 82 2.5 3.0 2.8 1.8 121 chr2R 17997155 intron dpr13 - chr2R 17997216 intron dpr13 - chr2R 17997276 intron dpr13 - chr2R_7_17995001 chr2R_17995001 RAL-176 702 chr2R 17998022 17998053 chr2R 17998103 17998134 13 80 5.5 3.5 4.5 2.4 112 chr2R 17998022 intron dpr13 - chr2R 17998078 intron dpr13 - chr2R 17998134 intron dpr13 - chr2R_13_17995001 chr2R_17995001 RAL-176 703 chr2R 18124341 18124368 chr2R 18124418 18124445 17 77 5.5 3.5 4.5 3.1 104 chr2R 18124341 intron stau - chr2R 18124393 intron stau - chr2R 18124445 intron stau - chr2R_17_18120001 chr2R_18120001 RAL-176 704 chr2R 18323805 18323836 chr2R 18323898 18323929 15 92 1.5 6.5 4.0 3.0 124 chr2R 18323805 intron sbb - chr2R 18323867 intron sbb - chr2R 18323929 intron sbb - chr2R_15_18320001 chr2R_18320001 RAL-176 705 chr2R 18358395 18358416 chr2R 18372607 18372628 roo 4 14212 4.0 5.5 4.8 0.7 14233 chr2R 18358395 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372628 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-176 706 chr2R 18376732 18376762 chr2R 18376821 18376852 5 90 2.5 6.5 4.5 0.9 120 chr2R 18376732 intergenic not near genes chr2R 18376792 intergenic not near genes chr2R 18376852 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-176 707 chr2R 18408280 18408314 chr2R 18408401 18408434 16 119 5.5 3.5 4.5 2.9 154 chr2R 18408280 exon GstE8 + chr2R 18408357 exon GstE8 + chr2R 18408434 exon GstE8 + chr2R_16_18405001 chr2R_18405001 RAL-176 708 chr2R 18487846 18487852 chr2R 18495316 18495322 blood 5 7470 0.0 8.5 4.2 1.0 7476 chr2R 18487846 intron CG30116 - chr2R 18491584 intron CG30116 - chr2R 18495322 intron CG30116 - chr2R_5_18490001 chr2R_18490001 RAL-176 709 chr2R 18528194 18528222 chr2R 18528277 18528307 11 84 3.5 2.0 2.8 2.9 113 chr2R 18528194 intron CG10924 + chr2R 18528250 intron CG10924 + chr2R 18528307 intron CG10924 + chr2R_11_18525001 chr2R_18525001 RAL-176 710 chr2R 18575810 18575830 chr2R 18581997 18582018 3S18 16 6187 3.5 7.0 5.2 2.6 6208 chr2R 18575810 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_16_18575001 chr2R_18575001 RAL-176 711 chr2R 18590866 18590900 chr2R 18600018 18600052 roo 19 9151 6.0 4.5 5.2 3.1 9186 chr2R 18590866 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_19_18595001 chr2R_18595001 RAL-176 712 chr2R 18646417 18646436 chr2R 18646562 18646581 5 145 2.5 8.0 5.2 0.8 164 chr2R 18646417 intron SP2637 - chr2R 18646499 intron SP2637 - chr2R 18646581 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-176 713 chr2R 18692905 18692911 chr2R 18692991 18692998 6 87 5.5 3.0 4.2 1.2 93 chr2R 18692905 intron Sik3 + chr2R 18692952 intron Sik3 + chr2R 18692998 intron Sik3 + chr2R_6_18690001 chr2R_18690001 RAL-176 714 chr2R 18835901 18835910 chr2R 18835983 18835992 4 82 2.5 0.0 1.2 1.8 91 chr2R 18835901 intron CG15083 + chr2R 18835946 intron CG15083 + chr2R 18835992 intron CG15083 + chr2R_4_18835001 chr2R_18835001 RAL-176 715 chr2R 18862307 18862319 chr2R 18862394 18862400 4 86 0.5 0.0 0.2 3.3 93 chr2R 18862307 intergenic Jheh3 - chr2R 18862354 intergenic Jheh3 - chr2R 18862400 intergenic Jheh3 -,CG43069 + chr2R_4_18860001 chr2R_18860001 RAL-176 716 chr2R 18953157 18953190 chr2R 18953244 18953276 13 87 2.5 2.0 2.2 4.1 119 chr2R 18953157 intron sano + chr2R 18953216 intron sano + chr2R 18953276 intron sano + chr2R_13_18950001 chr2R_18950001 RAL-176 717 chr2R 19012936 19012969 chr2R 19013030 19013063 21 92 4.0 6.0 5.0 3.5 127 chr2R 19012936 intergenic not near genes chr2R 19013000 intergenic not near genes chr2R 19013063 intergenic not near genes chr2R_21_19010001 chr2R_19010001 RAL-176 718 chr2R 19026048 19026061 chr2R 19026149 19026161 8 101 12.0 4.5 8.2 0.9 113 chr2R 19026048 intron 5-HT1B - chr2R 19026104 intron 5-HT1B - chr2R 19026161 intron 5-HT1B - chr2R_8_19025001 chr2R_19025001 RAL-176 719 chr2R 19072115 19072121 chr2R 19072191 19072193 4 75 14.0 8.0 11.0 0.3 78 chr2R 19072115 intron 5-HT1A + chr2R 19072154 intron 5-HT1A + chr2R 19072193 intron 5-HT1A + chr2R_4_19070001 chr2R_19070001 RAL-176 720 chr2R 19072122 19072132 chr2R 19072185 19072207 4 72 10.0 5.5 7.8 0.5 85 chr2R 19072122 intron 5-HT1A + chr2R 19072164 intron 5-HT1A + chr2R 19072207 intron 5-HT1A + chr2R_4_19070001 chr2R_19070001 RAL-176 721 chr2R 19300961 19300993 chr2R 19301044 19301076 33 82 9.5 9.5 9.5 3.1 115 chr2R 19300961 intron Tab2 + chr2R 19301018 intron Tab2 + chr2R 19301076 intron Tab2 + chr2R_33_19300001 chr2R_19300001 RAL-176 722 chr2R 19531939 19531941 chr2R 19532022 19532024 4 83 19.0 0.5 9.8 0.4 85 chr2R 19531939 intron sm - chr2R 19531982 intron sm - chr2R 19532024 intron sm - chr2R_4_19530001 chr2R_19530001 RAL-176 723 chr2R 19624212 19624239 chr2R 19624557 19624584 16 345 6.0 4.0 5.0 2.7 372 chr2R 19624212 intron sm - chr2R 19624398 intron sm - chr2R 19624584 intron sm - chr2R_16_19620001 chr2R_19620001 RAL-176 724 chr2R 19714703 19714732 chr2R 19714779 19714808 9 74 0.0 0.5 0.2 7.5 105 chr2R 19714703 3` UTR CG8517 + chr2R 19714756 3` UTR CG8517 + chr2R 19714808 3` UTR CG8517 + chr2R_9_19710001 chr2R_19710001 RAL-176 725 chr2R 19715833 19715856 chr2R 19723322 19723345 blood 11 7488 6.0 4.0 5.0 1.8 7512 chr2R 19715833 intergenic not near genes chr2R 19719589 intergenic not near genes chr2R 19723345 intergenic not near genes chr2R_11_19715001 chr2R_19715001 RAL-176 726 chr2R 19723792 19723804 chr2R 19724102 19724114 8 310 16.5 4.5 10.5 0.7 322 chr2R 19723792 intergenic not near genes chr2R 19723953 intergenic not near genes chr2R 19724114 intergenic not near genes chr2R_8_19720001 chr2R_19720001 RAL-176 727 chr2R 19807673 19807698 chr2R 19807755 19807780 7 80 3.5 2.0 2.8 1.8 107 chr2R 19807673 intergenic not near genes chr2R 19807726 intergenic not near genes chr2R 19807780 intergenic not near genes chr2R_7_19805001 chr2R_19805001 RAL-176 728 chr2R 19845081 19845115 chr2R 19845162 19845196 24 80 4.5 3.5 4.0 4.8 115 chr2R 19845081 intergenic not near genes chr2R 19845138 intergenic not near genes chr2R 19845196 intergenic not near genes chr2R_24_19845001 chr2R_19845001 RAL-176 729 chr2R 19914844 19914869 chr2R 19922256 19922281 mdg1 17 7412 7.0 6.5 6.8 2.2 7437 chr2R 19914844 intergenic not near genes chr2R 19918562 intergenic not near genes chr2R 19922281 intergenic not near genes chr2R_17_19915001 chr2R_19915001 RAL-176 730 chr2R 19914400 19914406 chr2R 19925726 19925746 mdg1 5 11329 33.0 32.0 32.5 0.1 11346 chr2R 19914400 intergenic not near genes chr2R 19920073 intergenic not near genes chr2R 19925746 3` UTR CR44626 - chr2R_5_19920001 chr2R_19920001 RAL-176 731 chr2R 19957441 19957464 chr2R 19962636 19962666 copia 10 5192 5.0 1.5 3.2 2.4 5225 chr2R 19957441 intergenic CG44623 + chr2R 19960054 intergenic not near genes chr2R 19962666 intergenic not near genes chr2R_10_19960001 chr2R_19960001 RAL-176 732 chr2R 19998201 19998231 chr2R 19998396 19998425 13 194 5.5 1.5 3.5 2.9 224 chr2R 19998201 intergenic not near genes chr2R 19998313 intergenic not near genes chr2R 19998425 intergenic not near genes chr2R_13_19995001 chr2R_19995001 RAL-176 733 chr2R 19998886 19998922 chr2R 19998971 19999007 18 84 1.0 1.5 1.2 8.2 121 chr2R 19998886 intergenic not near genes chr2R 19998946 intergenic not near genes chr2R 19999007 intergenic not near genes chr2R_18_19995001 chr2R_19995001 RAL-176 734 chr2R 20008178 20008205 chr2R 20008267 20008292 11 89 3.0 5.0 4.0 2.2 114 chr2R 20008178 intergenic not near genes chr2R 20008235 intergenic not near genes chr2R 20008292 intergenic not near genes chr2R_11_20005001 chr2R_20005001 RAL-176 735 chr2R 20008896 20008922 chr2R 20008978 20008993 9 78 2.5 5.5 4.0 1.8 97 chr2R 20008896 intergenic not near genes chr2R 20008944 intergenic not near genes chr2R 20008993 intergenic not near genes chr2R_9_20005001 chr2R_20005001 RAL-176 736 chr2R 20012996 20013032 chr2R 20013081 20013117 11 84 2.5 5.0 3.8 2.3 121 chr2R 20012996 intergenic not near genes chr2R 20013056 intergenic not near genes chr2R 20013117 intergenic not near genes chr2R_11_20010001 chr2R_20010001 RAL-176 737 chr2R 20079861 20079871 chr2R 20079943 20079953 6 82 0.0 9.0 4.5 1.1 92 chr2R 20079861 intergenic not near genes chr2R 20079907 intergenic not near genes chr2R 20079953 intergenic not near genes chr2R_6_20075001 chr2R_20075001 RAL-176 738 chr2R 20162103 20162113 chr2R 20162190 20162199 4 85 10.5 8.0 9.2 0.4 96 chr2R 20162103 intergenic not near genes chr2R 20162151 intergenic not near genes chr2R 20162199 intergenic not near genes chr2R_4_20160001 chr2R_20160001 RAL-176 739 chr2R 20265472 20265488 chr2R 20276780 20276796 11 11308 74.5 50.0 62.2 0.2 11324 chr2R 20265472 exon CG8908 + chr2R 20271134 intergenic CG8908 + chr2R 20276796 exon CG9143 - chr2R_11_20270001 chr2R_20270001 RAL-176 740 chr2R 20400013 20400025 chr2R 20400118 20400131 9 106 6.0 3.0 4.5 1.6 118 chr2R 20400013 intergenic not near genes chr2R 20400072 intergenic not near genes chr2R 20400131 intergenic not near genes chr2R_9_20400001 chr2R_20400001 RAL-176 741 chr2R 20474829 20474863 chr2R 20474909 20474940 8 77 5.5 4.5 5.0 1.3 111 chr2R 20474829 intron CG12484 + chr2R 20474884 intron CG12484 + chr2R 20474940 intron CG12484 + chr2R_8_20470001 chr2R_20470001 RAL-176 742 chr2R 20601719 20601755 chr2R 20601804 20601839 21 85 1.5 5.0 3.2 5.0 120 chr2R 20601719 intron bl + chr2R 20601779 intron bl + chr2R 20601839 intron bl + chr2R_21_20600001 chr2R_20600001 RAL-176 743 chr2R 20739442 20739471 chr2R 20744210 20744239 F-element 5 4767 7.0 1.5 4.2 1.0 4797 chr2R 20739442 intron dpr + chr2R 20741840 intron dpr + chr2R 20744239 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-176 744 chr2R 20759801 20759816 chr2R 20759877 20759892 9 76 0.0 2.0 1.0 4.5 91 chr2R 20759801 intergenic not near genes chr2R 20759846 intergenic not near genes chr2R 20759892 intergenic not near genes chr2R_9_20755001 chr2R_20755001 RAL-176 745 chr2R 20862331 20862349 chr2R 20862426 20862442 9 93 9.0 12.5 10.8 0.8 111 chr2R 20862331 intergenic not near genes chr2R 20862386 intergenic not near genes chr2R 20862442 intergenic not near genes chr2R_9_20860001 chr2R_20860001 RAL-176 746 chr2R 20863117 20863140 chr2R 20863203 20863224 8 86 7.0 3.5 5.2 1.3 107 chr2R 20863117 intergenic not near genes chr2R 20863170 intergenic not near genes chr2R 20863224 intergenic not near genes chr2R_8_20860001 chr2R_20860001 RAL-176 747 chr2R 20906759 20906773 chr2R 20906843 20906857 6 84 0.5 2.5 1.5 2.4 98 chr2R 20906759 intergenic not near genes chr2R 20906808 intergenic not near genes chr2R 20906857 intergenic not near genes chr2R_6_20905001 chr2R_20905001 RAL-176 748 chr2R 20967026 20967039 chr2R 20967103 20967116 6 75 8.5 0.0 4.2 1.2 90 chr2R 20967026 intergenic not near genes chr2R 20967071 intergenic not near genes chr2R 20967116 intergenic not near genes chr2R_6_20965001 chr2R_20965001 RAL-176 749 chr2R 21060638 21060670 chr2R 21060720 21060751 9 82 3.5 2.0 2.8 2.4 113 chr2R 21060638 intergenic CG15653 -,mRpL54 + chr2R 21060694 intergenic mRpL54 +,CG15653 - chr2R 21060751 intergenic mRpL54 +,CG15653 - chr2R_9_21060001 chr2R_21060001 RAL-176 750 chr2R 21103541 21103552 chr2R 21103619 21103632 4 79 3.0 0.0 1.5 1.6 91 chr2R 21103541 intron ktub + chr2R 21103586 intron ktub + chr2R 21103632 intron ktub + chr2R_4_21100001 chr2R_21100001 RAL-176 751 chr2R 21151129 21151137 chr2R 21153762 21153770 opus 4 2633 0.0 3.5 1.8 1.4 2641 chr2R 21151129 intron CG30389 - chr2R 21152450 intron CG30389 - chr2R 21153770 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-176 752 chr2R 21188219 21188228 chr2R 21188300 21188309 5 81 5.0 4.0 4.5 0.9 90 chr2R 21188219 exon tud + chr2R 21188264 intron tud + chr2R 21188309 intron tud + chr2R_5_21185001 chr2R_21185001 RAL-176 753 chr2R 21381927 21381936 chr2R 21382014 21382023 4 86 8.0 3.5 5.8 0.6 96 chr2R 21381927 intergenic not near genes chr2R 21381975 intergenic not near genes chr2R 21382023 intergenic not near genes chr2R_4_21380001 chr2R_21380001 RAL-176 754 chr2R 21446225 21446236 chr2R 21446283 21446313 10 76 0.0 6.5 3.2 2.4 88 chr2R 21446225 intron Sdc - chr2R 21446269 intron Sdc - chr2R 21446313 intron Sdc - chr2R_10_21445001 chr2R_21445001 RAL-176 755 chr2R 21452973 21452997 chr2R 21453127 21453151 5 154 1.0 1.0 1.0 2.5 178 chr2R 21452973 intron Sdc - chr2R 21453062 intron Sdc - chr2R 21453151 intron Sdc - chr2R_5_21450001 chr2R_21450001 RAL-176 756 chr2R 21457017 21457035 chr2R 21457105 21457127 20 91 0.0 11.0 5.5 3.1 110 chr2R 21457017 intron Sdc - chr2R 21457072 intron Sdc - chr2R 21457127 intron Sdc - chr2R_20_21455001 chr2R_21455001 RAL-176 757 chr2R 21465068 21465083 chr2R 21465151 21465166 4 83 0.0 1.0 0.5 2.7 98 chr2R 21465068 intron Sdc - chr2R 21465117 intron Sdc - chr2R 21465166 intron Sdc - chr2R_4_21465001 chr2R_21465001 RAL-176 758 chr2R 21546785 21546821 chr2R 21546866 21546878 20 73 7.5 7.0 7.2 2.4 93 chr2R 21546785 intron Egfr + chr2R 21546832 intron Egfr + chr2R 21546878 intron Egfr + chr2R_20_21545001 chr2R_21545001 RAL-176 759 chr2R 21608298 21608310 chr2R 21608409 21608424 12 113 0.0 4.5 2.2 3.8 126 chr2R 21608298 5` UTR CR43243 + chr2R 21608361 5` UTR CR43243 + chr2R 21608424 5` UTR,3` UTR CR43243 +,CG15673 - chr2R_12_21605001 chr2R_21605001 RAL-176 760 chr2R 21721577 21721608 chr2R 21721665 21721665 12 80 7.0 0.0 3.5 2.7 88 chr2R 21721577 intron LBR + chr2R 21721621 intron LBR + chr2R 21721665 intron LBR + chr2R_12_21720001 chr2R_21720001 RAL-176 761 chr2R 21738278 21738300 chr2R 21747437 21747458 roo 13 9157 3.0 2.0 2.5 3.7 9180 chr2R 21738278 intergenic not near genes chr2R 21742868 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_13_21740001 chr2R_21740001 RAL-176 762 chr2R 21738304 21738309 chr2R 21747435 21747469 roo 5 9151 2.5 2.0 2.2 1.6 9165 chr2R 21738304 intergenic not near genes chr2R 21742886 intergenic not near genes chr2R 21747469 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-176 763 chr2R 21753091 21753116 chr2R 21753571 21753601 roo 13 483 3.0 5.0 4.0 2.6 510 chr2R 21753091 intergenic not near genes chr2R 21753346 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_13_21750001 chr2R_21750001 RAL-176 764 chr2R 21809527 21809555 chr2R 21817767 21817795 roo 7 8236 2.0 7.5 4.8 1.2 8268 chr2R 21809527 intergenic not near genes chr2R 21813661 intergenic not near genes chr2R 21817795 intergenic not near genes chr2R_7_21810001 chr2R_21810001 RAL-176 765 chr2R 21870955 21870967 chr2R 21871034 21871046 6 79 2.5 4.5 3.5 1.3 91 chr2R 21870955 intergenic not near genes chr2R 21871000 intergenic not near genes chr2R 21871046 intergenic not near genes chr2R_6_21870001 chr2R_21870001 RAL-176 766 chr2R 21906270 21906296 chr2R 21906371 21906396 7 101 3.5 1.5 2.5 2.0 126 chr2R 21906270 intron Fili + chr2R 21906333 intron Fili + chr2R 21906396 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-176 767 chr2R 21919879 21919899 chr2R 21919967 21919987 5 87 6.5 5.0 5.8 0.7 108 chr2R 21919879 intron Fili + chr2R 21919933 intron Fili + chr2R 21919987 intron Fili + chr2R_5_21915001 chr2R_21915001 RAL-176 768 chr2R 22003088 22003122 chr2R 22003174 22003208 29 85 9.5 4.0 6.8 3.7 120 chr2R 22003088 intron CG34370 - chr2R 22003148 intron CG34370 - chr2R 22003208 intron CG34370 - chr2R_29_22000001 chr2R_22000001 RAL-176 769 chr2R 22072683 22072701 chr2R 22072768 22072786 10 85 6.0 6.0 6.0 1.4 103 chr2R 22072683 intron CG11474 - chr2R 22072734 intron CG11474 - chr2R 22072786 intron CG11474 - chr2R_10_22070001 chr2R_22070001 RAL-176 770 chr2R 22072705 22072712 chr2R 22072790 22072796 6 84 3.5 14.5 9.0 0.6 91 chr2R 22072705 intron CG11474 - chr2R 22072750 intron CG11474 - chr2R 22072796 intron CG11474 - chr2R_6_22070001 chr2R_22070001 RAL-176 771 chr2R 22095960 22095994 chr2R 22096043 22096073 30 83 6.5 3.0 4.8 5.2 113 chr2R 22095960 intron CG11073 - chr2R 22096016 intron CG11073 - chr2R 22096073 intron CG11073 - chr2R_30_22095001 chr2R_22095001 RAL-176 772 chr2R 22185673 22185703 chr2R 22185772 22185802 7 99 2.0 0.0 1.0 3.5 129 chr2R 22185673 3` UTR MED16 + chr2R 22185738 3` UTR MED16 + chr2R 22185802 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-176 773 chr2R 22205867 22205881 chr2R 22205959 22205973 6 91 6.0 4.5 5.2 1.0 106 chr2R 22205867 intergenic CG3290 -,CG3292 - chr2R 22205920 intergenic CG3290 -,CG3292 - chr2R 22205973 intergenic CG3290 -,CG3292 - chr2R_6_22205001 chr2R_22205001 RAL-176 774 chr2R 22248862 22248875 chr2R 22248924 22248952 5 74 5.5 9.5 7.5 0.6 90 chr2R 22248862 intron dve + chr2R 22248907 intron dve + chr2R 22248952 intron dve + chr2R_5_22245001 chr2R_22245001 RAL-176 775 chr2R 22279422 22279450 chr2R 22279568 22279598 14 146 7.0 3.5 5.2 2.3 176 chr2R 22279422 intron dve + chr2R 22279510 intron dve + chr2R 22279598 intron dve + chr2R_14_22275001 chr2R_22275001 RAL-176 776 chr2R 4825123 4825123 chr2R 22311215 22311219 4 17486094 18.0 8.0 13.0 0.3 17486096 chr2R 4825123 intergenic not near genes chr2R 13568171 intergenic not near genes chr2R 22311219 intron wdp - chr2R_4_13565001 chr2R_13565001 RAL-176 777 chr2R 22349691 22349719 chr2R 22351474 22351503 jockey 12 1783 9.0 5.0 7.0 1.5 1812 chr2R 22349691 intron Liprin-gamma - chr2R 22350597 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_12_22350001 chr2R_22350001 RAL-176 778 chr2R 22360381 22360398 chr2R 22360814 22360831 jockey 8 432 5.5 4.0 4.8 1.4 450 chr2R 22360381 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_8_22360001 chr2R_22360001 RAL-176 779 chr2R 22460379 22460405 chr2R 22460458 22460484 4 79 2.0 4.5 3.2 1.0 105 chr2R 22460379 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460484 intron CG10384 + chr2R_4_22460001 chr2R_22460001 RAL-176 780 chr2R 22525748 22525787 chr2R 22529303 22529342 jockey 11 3552 2.5 4.5 3.5 2.4 3594 chr2R 22525748 intron px - chr2R 22527545 intron px - chr2R 22529342 intron px - chr2R_11_22525001 chr2R_22525001 RAL-176 781 chr2R 22545618 22545651 chr2R 22545697 22545730 16 79 3.5 3.5 3.5 3.6 112 chr2R 22545618 intron px - chr2R 22545674 intron px - chr2R 22545730 intron px - chr2R_16_22545001 chr2R_22545001 RAL-176 782 chr2R 22654369 22654402 chr2R 22654449 22654483 12 80 1.5 10.0 5.8 1.8 114 chr2R 22654369 exon Cyp6d2 - chr2R 22654426 5` UTR Cyp6d2 - chr2R 22654483 5` UTR Cyp6d2 - chr2R_12_22650001 chr2R_22650001 RAL-176 783 chr2R 22765220 22765254 chr2R 22766962 22766997 10 1742 7.0 8.0 7.5 1.2 1777 chr2R 22765220 intron,3` UTR CG42260 -,CG13527 + chr2R 22766108 intron CG42260 - chr2R 22766997 intron CG42260 - chr2R_10_22765001 chr2R_22765001 RAL-176 784 chr2R 22843032 22843046 chr2R 22844994 22845008 flea 5 1961 5.5 3.5 4.5 0.9 1976 chr2R 22843032 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845008 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-176 785 chr2R 23029612 23029636 chr2R 23029689 23029713 10 77 5.0 6.0 5.5 1.5 101 chr2R 23029612 intron,intron twi +,CG42741 - chr2R 23029662 intron,intron twi +,CG42741 - chr2R 23029713 intron,intron twi +,CG42741 - chr2R_10_23025001 chr2R_23025001 RAL-176 786 chr2R 23045337 23045361 chr2R 23045551 23045575 17 213 7.0 3.0 5.0 2.8 238 chr2R 23045337 intron twi + chr2R 23045456 intron twi + chr2R 23045575 intron twi + chr2R_17_23045001 chr2R_23045001 RAL-176 787 chr2R 23052650 23052684 chr2R 23052726 23052760 8 75 4.0 4.5 4.2 1.5 110 chr2R 23052650 intergenic not near genes chr2R 23052705 intergenic not near genes chr2R 23052760 intergenic not near genes chr2R_8_23050001 chr2R_23050001 RAL-176 788 chr2R 23053996 23054030 chr2R 23054073 23054105 23 77 6.0 3.5 4.8 4.0 109 chr2R 23053996 intergenic not near genes chr2R 23054050 intergenic not near genes chr2R 23054105 intergenic not near genes chr2R_23_23050001 chr2R_23050001 RAL-176 789 chr2R 23061752 23061786 chr2R 23061828 23061862 17 75 1.0 6.5 3.8 3.5 110 chr2R 23061752 3` UTR l(2)06496 - chr2R 23061807 3` UTR l(2)06496 - chr2R 23061862 3` UTR l(2)06496 - chr2R_17_23060001 chr2R_23060001 RAL-176 790 chr2R 23134839 23134850 chr2R 23134922 23134933 4 82 4.0 20.5 12.2 0.3 94 chr2R 23134839 intergenic not near genes chr2R 23134886 intergenic not near genes chr2R 23134933 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-176 791 chr2R 23158346 23158356 chr2R 23158423 23158433 12 76 27.5 18.0 22.8 0.5 87 chr2R 23158346 intron CG9899 + chr2R 23158390 intron CG9899 + chr2R 23158433 intron CG9899 + chr2R_12_23155001 chr2R_23155001 RAL-176 792 chr2R 23162025 23162039 chr2R 23162138 23162152 8 112 12.5 8.5 10.5 0.7 127 chr2R 23162025 exon CG9899 + chr2R 23162088 intergenic CG9899 + chr2R 23162152 intergenic CG9899 + chr2R_8_23160001 chr2R_23160001 RAL-176 793 chr2R 23188570 23188586 chr2R 23188648 23188664 4 78 2.0 6.0 4.0 0.8 94 chr2R 23188570 intron CG34371 - chr2R 23188617 intron CG34371 - chr2R 23188664 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-176 794 chr2R 23219012 23219024 chr2R 23219251 23219263 4 238 8.0 0.0 4.0 0.8 251 chr2R 23219012 intergenic not near genes chr2R 23219138 intergenic not near genes chr2R 23219263 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-176 795 chr2R 23394327 23394358 chr2R 23394409 23394438 23 81 4.0 7.0 5.5 3.5 111 chr2R 23394327 intron CG3530 - chr2R 23394382 intron CG3530 - chr2R 23394438 intron CG3530 - chr2R_23_23390001 chr2R_23390001 RAL-176 796 chr2R 23422645 23422648 chr2R 23422724 23422728 4 80 39.0 10.5 24.8 0.2 83 chr2R 23422645 intron CG9815 - chr2R 23422686 intron CG9815 - chr2R 23422728 intron CG9815 - chr2R_4_23420001 chr2R_23420001 RAL-176 797 chr2R 23422649 23422679 chr2R 23422723 23422759 30 77 12.0 9.5 10.8 2.5 110 chr2R 23422649 intron CG9815 - chr2R 23422704 intron CG9815 - chr2R 23422759 intron CG9815 - chr2R_30_23420001 chr2R_23420001 RAL-176 798 chr2R 23423738 23423772 chr2R 23423896 23423930 19 158 1.0 7.5 4.2 3.7 192 chr2R 23423738 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423930 intron CG9815 - chr2R_19_23420001 chr2R_23420001 RAL-176 799 chr2R 23508918 23508942 chr2R 23509035 23509059 5 117 3.0 0.5 1.8 1.8 141 chr2R 23508918 intergenic not near genes chr2R 23508988 intergenic not near genes chr2R 23509059 intergenic not near genes chr2R_5_23505001 chr2R_23505001 RAL-176 800 chr2R 23518194 23518203 chr2R 23518271 23518278 11 78 4.5 0.0 2.2 3.4 84 chr2R 23518194 intergenic not near genes chr2R 23518236 intergenic not near genes chr2R 23518278 intergenic not near genes chr2R_11_23515001 chr2R_23515001 RAL-176 801 chr2R 23529573 23529601 chr2R 23537149 23537159 412 10 7569 17.5 9.0 13.2 0.7 7586 chr2R 23529573 intron bw - chr2R 23533366 intron bw - chr2R 23537159 exon bw - chr2R_10_23530001 chr2R_23530001 RAL-176 802 chr2R 23554929 23554956 chr2R 23555011 23555040 8 83 1.5 2.0 1.8 2.9 111 chr2R 23554929 intergenic Rrp4 -,pita - chr2R 23554984 intergenic Rrp4 -,pita - chr2R 23555040 3` UTR Rrp4 - chr2R_8_23550001 chr2R_23550001 RAL-176 803 chr2R 23594840 23594869 chr2R 23595057 23595086 19 217 6.0 5.5 5.8 2.8 246 chr2R 23594840 intron apt + chr2R 23594963 intron apt + chr2R 23595086 intron apt + chr2R_19_23590001 chr2R_23590001 RAL-176 804 chr2R 23607039 23607183 chr2R 23607120 23607276 13 84 6.0 5.0 5.5 2.0 237 chr2R 23607039 intron CG17664 - chr2R 23607158 intron CG17664 - chr2R 23607276 intron CG17664 - chr2R_13_23605001 chr2R_23605001 RAL-176 805 chr2R 23724565 23724594 chr2R 23725112 23725141 15 547 2.5 3.0 2.8 3.9 576 chr2R 23724565 intron Sesn + chr2R 23724853 intron Sesn + chr2R 23725141 intron Sesn + chr2R_15_23720001 chr2R_23720001 RAL-176 806 chr2R 23784475 23784507 chr2R 23784548 23784585 17 77 3.5 2.5 3.0 4.2 110 chr2R 23784475 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_17_23780001 chr2R_23780001 RAL-176 807 chr2R 23914302 23914332 chr2R 23921922 23921956 412 21 7619 5.5 6.5 6.0 3.0 7654 chr2R 23914302 exon kcc + chr2R 23918129 intron kcc + chr2R 23921956 intron kcc + chr2R_21_23915001 chr2R_23915001 RAL-176 808 chr2R 23940209 23940234 chr2R 23940294 23940318 9 84 2.0 8.0 5.0 1.5 109 chr2R 23940209 intergenic Tal +,CG3735 - chr2R 23940264 intergenic Tal + chr2R 23940318 intergenic Tal + chr2R_9_23940001 chr2R_23940001 RAL-176 809 chr2R 23986514 23986549 chr2R 23986594 23986629 13 80 4.0 5.5 4.8 2.2 115 chr2R 23986514 intron Phm - chr2R 23986572 intron Phm - chr2R 23986629 intron,5` UTR Phm -,CG30178 + chr2R_13_23985001 chr2R_23985001 RAL-176 810 chr2R 24031379 24031414 chr2R 24031463 24031498 23 83 3.0 5.5 4.2 4.4 119 chr2R 24031379 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_23_24030001 chr2R_24030001 RAL-176 811 chr2R 24147073 24147097 chr2R 24154651 24154657 412 7 7572 5.5 9.0 7.2 0.9 7584 chr2R 24147073 intron Dat + chr2R 24150865 intron Dat + chr2R 24154657 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-176 812 chr2R 24177241 24177257 chr2R 24184726 24184741 412 5 7485 4.5 2.0 3.2 1.2 7500 chr2R 24177241 3` UTR Nop60B + chr2R 24180991 intron Nop60B + chr2R 24184741 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-176 813 chr2R 24271714 24271719 chr2R 24271790 24271795 7 76 14.0 11.5 12.8 0.5 81 chr2R 24271714 intergenic not near genes chr2R 24271754 intergenic not near genes chr2R 24271795 intergenic not near genes chr2R_7_24270001 chr2R_24270001 RAL-176 814 chr2R 24303887 24303919 chr2R 24303971 24304003 31 83 6.5 2.5 4.5 5.6 116 chr2R 24303887 intergenic not near genes chr2R 24303945 intergenic not near genes chr2R 24304003 intergenic not near genes chr2R_31_24300001 chr2R_24300001 RAL-176 815 chr2R 24351411 24351439 chr2R 24351492 24351520 18 81 8.5 9.5 9.0 1.8 109 chr2R 24351411 intron bs + chr2R 24351466 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_18_24350001 chr2R_24350001 RAL-176 816 chr2R 24353429 24353460 chr2R 24361788 24361822 roo 13 8362 1.5 9.0 5.2 2.1 8393 chr2R 24353429 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_13_24355001 chr2R_24355001 RAL-176 817 chr2R 24383828 24383858 chr2R 24383906 24383939 22 81 3.0 9.5 6.2 3.1 111 chr2R 24383828 intron mAChR-A - chr2R 24383884 intron mAChR-A - chr2R 24383939 exon mAChR-A - chr2R_22_24380001 chr2R_24380001 RAL-176 818 chr2R 24430808 24430835 chr2R 24430889 24430916 6 81 1.5 1.5 1.5 2.4 108 chr2R 24430808 intergenic CG15873 - chr2R 24430862 intergenic CG15873 -,Pgam5-2 - chr2R 24430916 intergenic CG15873 -,Pgam5-2 - chr2R_6_24430001 chr2R_24430001 RAL-176 819 chr2R 24509309 24509340 chr2R 24509393 24509425 12 83 3.5 8.0 5.8 1.8 116 chr2R 24509309 intergenic Letm1 - chr2R 24509367 intergenic Letm1 - chr2R 24509425 intergenic Letm1 - chr2R_12_24505001 chr2R_24505001 RAL-176 820 chr2R 24518022 24518049 chr2R 24518108 24518135 5 86 12.5 7.0 9.8 0.5 113 chr2R 24518022 intergenic not near genes chr2R 24518078 intergenic not near genes chr2R 24518135 intergenic not near genes chr2R_5_24515001 chr2R_24515001 RAL-176 821 chr2R 24542320 24542353 chr2R 24542574 24542606 13 252 4.5 5.5 5.0 2.2 286 chr2R 24542320 intron,intron CG4622 -,ITP + chr2R 24542463 intron,intron CG4622 -,ITP + chr2R 24542606 intron,intron CG4622 -,ITP + chr2R_13_24540001 chr2R_24540001 RAL-176 822 chr2R 24590117 24590146 chr2R 24590209 24590238 19 90 9.5 12.0 10.8 1.6 121 chr2R 24590117 intron pio + chr2R 24590178 intron pio + chr2R 24590238 intron pio + chr2R_19_24590001 chr2R_24590001 RAL-176 823 chr2R 24591519 24591545 chr2R 24591595 24591621 11 75 4.0 3.0 3.5 2.4 102 chr2R 24591519 intron pio + chr2R 24591570 intron pio + chr2R 24591621 intron pio + chr2R_11_24590001 chr2R_24590001 RAL-176 824 chr2R 24636906 24636924 chr2R 24636992 24637010 8 86 5.5 0.5 3.0 2.0 104 chr2R 24636906 intron CG13594 - chr2R 24636958 intron CG13594 - chr2R 24637010 intron CG13594 - chr2R_8_24635001 chr2R_24635001 RAL-176 825 chr2R 24647611 24647615 chr2R 24655156 24655172 412 4 7554 0.0 8.5 4.2 0.8 7561 chr2R 24647611 intergenic not near genes chr2R 24651392 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-176 826 chr2R 24727882 24727918 chr2R 24735390 24735425 mdg1 28 7507 4.0 11.5 7.8 3.2 7543 chr2R 24727882 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_28_24730001 chr2R_24730001 RAL-176 827 chr2R 24763608 24763643 chr2R 24765584 24765619 G2 61 1973 17.5 16.5 17.0 3.4 2011 chr2R 24763608 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_61_24760001 chr2R_24760001 RAL-176 828 chr2R 24859841 24859871 chr2R 24859927 24859957 11 85 3.0 2.0 2.5 3.1 116 chr2R 24859841 5` UTR CR44829 + chr2R 24859899 5` UTR CR44829 + chr2R 24859957 5` UTR CR44829 + chr2R_11_24855001 chr2R_24855001 RAL-176 829 chr2R 24865657 24865682 chr2R 24865729 24865761 10 77 6.0 4.0 5.0 1.7 104 chr2R 24865657 intergenic not near genes chr2R 24865709 intergenic not near genes chr2R 24865761 intergenic not near genes chr2R_10_24865001 chr2R_24865001 RAL-176 830 chr2R 24883884 24883910 chr2R 24883967 24883993 6 83 3.0 8.5 5.8 0.9 109 chr2R 24883884 intron NKAIN + chr2R 24883938 intron NKAIN + chr2R 24883993 intron NKAIN + chr2R_6_24880001 chr2R_24880001 RAL-176 831 chr2R 24984008 24984034 chr2R 24984109 24984147 10 110 3.0 6.5 4.8 1.7 139 chr2R 24984008 intron emp - chr2R 24984078 intron emp - chr2R 24984147 intron emp - chr2R_10_24980001 chr2R_24980001 RAL-176 832 chr2R 25014543 25014572 chr2R 25014618 25014648 19 73 7.5 2.0 4.8 3.3 105 chr2R 25014543 intron uzip + chr2R 25014596 intron uzip + chr2R 25014648 intron uzip + chr2R_19_25010001 chr2R_25010001 RAL-176 833 chr2R 25104803 25104829 chr2R 25104898 25104924 11 94 2.0 3.0 2.5 3.1 121 chr2R 25104803 intron lov - chr2R 25104864 intron lov - chr2R 25104924 intron lov - chr2R_11_25100001 chr2R_25100001 RAL-176 834 chr2R 25124459 25124486 chr2R 25124550 25124574 12 91 0.5 4.0 2.2 3.8 115 chr2R 25124459 intron lov - chr2R 25124516 intron lov - chr2R 25124574 intron lov - chr2R_12_25120001 chr2R_25120001 RAL-176 835 chr2R 25253443 25253476 chr2R 25253519 25253552 8 73 4.0 3.5 3.8 1.7 109 chr2R 25253443 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253552 intron,intron CG9380 -,CG30428 + chr2R_8_25250001 chr2R_25250001 RAL-176 836 chr3L 109538 109544 chr3L 109626 109632 4 88 2.5 3.0 2.8 1.1 94 chr3L 109538 intergenic not near genes chr3L 109585 intergenic not near genes chr3L 109632 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-176 837 chr3L 110225 110245 chr3L 119392 119412 roo 9 9167 1.0 6.0 3.5 2.0 9187 chr3L 110225 intergenic not near genes chr3L 114818 intergenic not near genes chr3L 119412 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-176 838 chr3L 390956 390985 chr3L 391062 391090 20 104 6.0 11.0 8.5 2.1 134 chr3L 390956 intron trh - chr3L 391023 intron trh - chr3L 391090 intron trh - chr3L_20_390001 chr3L_390001 RAL-176 839 chr3L 402688 402716 chr3L 409740 409769 297 17 7053 13.0 8.0 10.5 1.5 7081 chr3L 402688 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_17_405001 chr3L_405001 RAL-176 840 chr3L 483606 483637 chr3L 483682 483713 13 74 9.0 5.5 7.2 1.6 107 chr3L 483606 intron klar - chr3L 483660 intron klar - chr3L 483713 intron klar - chr3L_13_480001 chr3L_480001 RAL-176 841 chr3L 491650 491667 chr3L 491732 491741 5 80 2.5 1.5 2.0 1.7 91 chr3L 491650 intron klar - chr3L 491696 intron klar - chr3L 491741 intron klar - chr3L_5_490001 chr3L_490001 RAL-176 842 chr3L 494603 494619 chr3L 494685 494701 4 82 5.0 1.0 3.0 1.0 98 chr3L 494603 intron klar - chr3L 494652 intron klar - chr3L 494701 intron klar - chr3L_4_490001 chr3L_490001 RAL-176 843 chr3L 514938 514964 chr3L 515020 515046 8 79 1.0 1.0 1.0 4.0 108 chr3L 514938 intron klar - chr3L 514992 intron klar - chr3L 515046 intron klar - chr3L_8_510001 chr3L_510001 RAL-176 844 chr3L 534780 534807 chr3L 535036 535063 14 256 2.5 6.5 4.5 2.5 283 chr3L 534780 intron klar - chr3L 534922 intron klar - chr3L 535063 intron klar - chr3L_14_530001 chr3L_530001 RAL-176 845 chr3L 557739 557766 chr3L 557927 557955 12 189 1.0 6.5 3.8 2.5 216 chr3L 557739 intron hipk + chr3L 557847 intron hipk + chr3L 557955 intron hipk + chr3L_12_555001 chr3L_555001 RAL-176 846 chr3L 559526 559554 chr3L 559911 559919 11 384 5.0 1.0 3.0 2.8 393 chr3L 559526 intron hipk + chr3L 559722 intron hipk + chr3L 559919 intron hipk + chr3L_11_555001 chr3L_555001 RAL-176 847 chr3L 642470 642501 chr3L 642561 642592 15 91 3.0 5.0 4.0 3.0 122 chr3L 642470 5` UTR CR43334 + chr3L 642531 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_15_640001 chr3L_640001 RAL-176 848 chr3L 651388 651424 chr3L 651475 651511 16 85 3.0 6.0 4.5 2.9 123 chr3L 651388 intergenic Gale +,CG3402 - chr3L 651450 intergenic CG3402 -,Gale + chr3L 651511 intergenic CG3402 -,Gale + chr3L_16_650001 chr3L_650001 RAL-176 849 chr3L 705244 705261 chr3L 705320 705337 10 76 3.0 3.5 3.2 2.4 93 chr3L 705244 intergenic CR44514 + chr3L 705290 intergenic CR44514 + chr3L 705337 5` UTR CR44514 + chr3L_10_705001 chr3L_705001 RAL-176 850 chr3L 705899 705910 chr3L 705995 706006 5 96 2.5 0.5 1.5 2.0 107 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705952 3` UTR CG13895 - chr3L 706006 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-176 851 chr3L 767826 767850 chr3L 767914 767937 10 87 3.5 4.0 3.8 2.1 111 chr3L 767826 intergenic not near genes chr3L 767882 intergenic not near genes chr3L 767937 intergenic not near genes chr3L_10_765001 chr3L_765001 RAL-176 852 chr3L 789913 789933 chr3L 790398 790418 roo 4 485 6.5 3.5 5.0 0.7 505 chr3L 789913 intergenic not near genes chr3L 790166 intergenic not near genes chr3L 790418 intergenic not near genes chr3L_4_790001 chr3L_790001 RAL-176 853 chr3L 854186 854205 chr3L 854259 854283 15 78 4.5 8.0 6.2 2.1 97 chr3L 854186 intron dpr20 - chr3L 854234 intron dpr20 - chr3L 854283 intron dpr20 - chr3L_15_850001 chr3L_850001 RAL-176 854 chr3L 858000 858032 chr3L 866480 866487 Tirant 20 8472 8.0 5.0 6.5 2.7 8487 chr3L 858000 intergenic not near genes chr3L 862244 intergenic not near genes chr3L 866487 intergenic CG12502 + chr3L_20_860001 chr3L_860001 RAL-176 855 chr3L 899996 900013 chr3L 900080 900097 7 84 0.0 4.5 2.2 2.2 101 chr3L 899996 intergenic not near genes chr3L 900046 intergenic not near genes chr3L 900097 intergenic not near genes chr3L_7_900001 chr3L_900001 RAL-176 856 chr3L 925174 925205 chr3L 932600 932631 mdg1 10 7426 4.5 3.0 3.8 2.1 7457 chr3L 925174 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932631 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-176 857 chr3L 933919 933942 chr3L 934022 934045 10 103 3.0 5.0 4.0 2.0 126 chr3L 933919 intron Glut1 + chr3L 933982 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_10_930001 chr3L_930001 RAL-176 858 chr3L 939770 939802 chr3L 940891 940917 jockey 29 1120 5.5 10.0 7.8 3.3 1147 chr3L 939770 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940917 intron Glut1 + chr3L_29_940001 chr3L_940001 RAL-176 859 chr3L 958318 958325 chr3L 958402 958407 6 84 6.0 2.5 4.2 1.2 89 chr3L 958318 intron Glut1 + chr3L 958362 intron Glut1 + chr3L 958407 intron Glut1 + chr3L_6_955001 chr3L_955001 RAL-176 860 chr3L 958326 958342 chr3L 958401 958426 13 81 2.5 2.5 2.5 3.7 100 chr3L 958326 intron Glut1 + chr3L 958376 intron Glut1 + chr3L 958426 intron Glut1 + chr3L_13_955001 chr3L_955001 RAL-176 861 chr3L 1021373 1021406 chr3L 1021453 1021486 14 80 5.5 7.0 6.2 1.9 113 chr3L 1021373 intron trio - chr3L 1021430 intron trio - chr3L 1021486 intron trio - chr3L_14_1020001 chr3L_1020001 RAL-176 862 chr3L 1040549 1040581 chr3L 1040633 1040664 18 84 6.0 7.0 6.5 2.4 115 chr3L 1040549 intron bab1 - chr3L 1040606 intron bab1 - chr3L 1040664 intron bab1 - chr3L_18_1040001 chr3L_1040001 RAL-176 863 chr3L 1109632 1109667 chr3L 1109720 1109738 25 85 4.5 5.0 4.8 4.3 106 chr3L 1109632 intergenic not near genes chr3L 1109685 intergenic not near genes chr3L 1109738 intergenic not near genes chr3L_25_1105001 chr3L_1105001 RAL-176 864 chr3L 1154135 1154150 chr3L 1163281 1163300 roo 5 9149 4.5 3.0 3.8 1.0 9165 chr3L 1154135 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163300 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-176 865 chr3L 1219595 1219625 chr3L 1227327 1227358 412 23 7732 7.0 11.5 9.2 2.3 7763 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227358 intron mwh + chr3L_23_1220001 chr3L_1220001 RAL-176 866 chr3L 1250977 1250979 chr3L 1252254 1252255 4 1276 36.5 36.5 36.5 0.1 1278 chr3L 1250977 exon CG9129 + chr3L 1251616 exon CG9129 + chr3L 1252255 exon,5` UTR CG9130 +,CG9133 + chr3L_4_1250001 chr3L_1250001 RAL-176 867 chr3L 1265093 1265118 chr3L 1265169 1265202 6 83 1.0 0.0 0.5 4.0 109 chr3L 1265093 intron CG9134 + chr3L 1265148 intron CG9134 + chr3L 1265202 intron CG9134 + chr3L_6_1265001 chr3L_1265001 RAL-176 868 chr3L 1347156 1347193 chr3L 1347241 1347278 27 82 5.0 7.0 6.0 3.9 122 chr3L 1347156 intron Ptp61F - chr3L 1347217 intron Ptp61F - chr3L 1347278 intron Ptp61F - chr3L_27_1345001 chr3L_1345001 RAL-176 869 chr3L 1358754 1358793 chr3L 1359135 1359174 17 380 1.0 6.5 3.8 3.5 420 chr3L 1358754 intron Ptp61F - chr3L 1358964 intron Ptp61F - chr3L 1359174 intron Ptp61F - chr3L_17_1355001 chr3L_1355001 RAL-176 870 chr3L 1361293 1361322 chr3L 1361368 1361385 7 73 7.0 6.5 6.8 0.9 92 chr3L 1361293 intron Ptp61F - chr3L 1361339 intron Ptp61F - chr3L 1361385 intron Ptp61F - chr3L_7_1360001 chr3L_1360001 RAL-176 871 chr3L 1372362 1372377 chr3L 1372440 1372454 9 78 2.0 2.0 2.0 3.0 92 chr3L 1372362 intron,intron Ptp61F -,ru + chr3L 1372408 intron,intron Ptp61F -,ru + chr3L 1372454 intron,intron Ptp61F -,ru + chr3L_9_1370001 chr3L_1370001 RAL-176 872 chr3L 1415781 1415807 chr3L 1415863 1415884 10 80 3.5 5.0 4.2 1.9 103 chr3L 1415781 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415884 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-176 873 chr3L 1479576 1479604 chr3L 1479857 1479885 11 278 8.0 2.0 5.0 1.8 309 chr3L 1479576 intron stet - chr3L 1479730 intron stet - chr3L 1479885 intron stet - chr3L_11_1475001 chr3L_1475001 RAL-176 874 chr3L 1501996 1502017 chr3L 1502077 1502098 11 81 4.0 2.5 3.2 2.6 102 chr3L 1501996 intron pUf68 - chr3L 1502047 intron pUf68 - chr3L 1502098 intron pUf68 - chr3L_11_1500001 chr3L_1500001 RAL-176 875 chr3L 1505996 1506026 chr3L 1513592 1513620 17.6 7 7595 8.5 5.0 6.8 0.9 7624 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513620 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-176 876 chr3L 1528234 1528239 chr3L 1528308 1528312 4 74 19.0 16.5 17.8 0.2 78 chr3L 1528234 intron CG12090 - chr3L 1528273 intron CG12090 - chr3L 1528312 intron CG12090 - chr3L_4_1525001 chr3L_1525001 RAL-176 877 chr3L 1528247 1528258 chr3L 1528304 1528333 10 70 11.0 12.5 11.8 0.8 86 chr3L 1528247 intron CG12090 - chr3L 1528290 intron CG12090 - chr3L 1528333 intron CG12090 - chr3L_10_1525001 chr3L_1525001 RAL-176 878 chr3L 1559818 1559848 chr3L 1559895 1559924 6 77 3.0 4.0 3.5 1.3 106 chr3L 1559818 3` UTR,3` UTR Pex10 +,CG7879 - chr3L 1559871 3` UTR CG7879 - chr3L 1559924 3` UTR CG7879 - chr3L_6_1555001 chr3L_1555001 RAL-176 879 chr3L 1674331 1674359 chr3L 1674414 1674442 19 82 5.0 9.5 7.2 2.3 111 chr3L 1674331 intergenic CG7991 + chr3L 1674386 intergenic CG7991 + chr3L 1674442 intergenic CG7991 + chr3L_19_1670001 chr3L_1670001 RAL-176 880 chr3L 1670412 1670444 chr3L 1681729 1681762 15 11319 38.5 21.0 29.8 0.5 11350 chr3L 1670412 3` UTR CG13930 - chr3L 1676087 intron CG7991 + chr3L 1681762 intron CG7991 + chr3L_15_1675001 chr3L_1675001 RAL-176 881 chr3L 1741358 1741388 chr3L 1741438 1741468 12 80 2.0 3.5 2.8 3.2 110 chr3L 1741358 intron Gk + chr3L 1741413 intron Gk + chr3L 1741468 intron Gk + chr3L_12_1740001 chr3L_1740001 RAL-176 882 chr3L 1774809 1774840 chr3L 1774896 1774913 20 83 5.5 6.5 6.0 2.9 104 chr3L 1774809 5` UTR,5` UTR CG13933 -,CR44351 + chr3L 1774861 5` UTR,5` UTR CG13933 -,CR44351 + chr3L 1774913 5` UTR,5` UTR CG13933 -,CR44351 + chr3L_20_1770001 chr3L_1770001 RAL-176 883 chr3L 1805699 1805712 chr3L 1805871 1805886 7 174 10.5 5.5 8.0 0.8 187 chr3L 1805699 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805886 intron CG42676 + chr3L_7_1805001 chr3L_1805001 RAL-176 884 chr3L 1885166 1885184 chr3L 1885246 1885264 6 80 0.0 5.0 2.5 1.7 98 chr3L 1885166 intergenic Aprt -,Tmhs + chr3L 1885215 intergenic Aprt -,Tmhs + chr3L 1885264 intergenic Aprt -,Tmhs + chr3L_6_1885001 chr3L_1885001 RAL-176 885 chr3L 1991119 1991153 chr3L 1991197 1991226 9 75 1.0 2.0 1.5 3.6 107 chr3L 1991119 intergenic not near genes chr3L 1991172 intergenic not near genes chr3L 1991226 intergenic not near genes chr3L_9_1990001 chr3L_1990001 RAL-176 886 chr3L 2028194 2028207 chr3L 2028277 2028290 6 83 2.5 4.5 3.5 1.3 96 chr3L 2028194 exon CG34259 + chr3L 2028242 exon CG34259 + chr3L 2028290 exon CG34259 + chr3L_6_2025001 chr3L_2025001 RAL-176 887 chr3L 2035276 2035291 chr3L 2035351 2035367 4 75 2.0 0.0 1.0 2.0 91 chr3L 2035276 intergenic not near genes chr3L 2035322 intergenic not near genes chr3L 2035367 intergenic not near genes chr3L_4_2035001 chr3L_2035001 RAL-176 888 chr3L 2052050 2052079 chr3L 2052223 2052251 11 172 6.0 1.0 3.5 2.4 201 chr3L 2052050 intron sls - chr3L 2052150 intron sls - chr3L 2052251 intron sls - chr3L_11_2050001 chr3L_2050001 RAL-176 889 chr3L 2168771 2168807 chr3L 2168862 2168898 11 91 6.0 3.5 4.8 1.9 127 chr3L 2168771 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_11_2165001 chr3L_2165001 RAL-176 890 chr3L 2279048 2279057 chr3L 2279195 2279202 6 147 0.0 5.0 2.5 1.7 154 chr3L 2279048 intergenic not near genes chr3L 2279125 intergenic not near genes chr3L 2279202 intergenic not near genes chr3L_6_2275001 chr3L_2275001 RAL-176 891 chr3L 2279058 2279064 chr3L 2279191 2279211 5 144 0.0 5.0 2.5 1.4 153 chr3L 2279058 intergenic not near genes chr3L 2279134 intergenic not near genes chr3L 2279211 intergenic not near genes chr3L_5_2275001 chr3L_2275001 RAL-176 892 chr3L 2293850 2293862 chr3L 2293928 2293940 7 78 2.5 0.0 1.2 3.2 90 chr3L 2293850 intron MsR2 + chr3L 2293895 intron MsR2 + chr3L 2293940 intron MsR2 + chr3L_7_2290001 chr3L_2290001 RAL-176 893 chr3L 2308007 2308036 chr3L 2308113 2308142 13 106 6.5 6.5 6.5 1.7 135 chr3L 2308007 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_13_2305001 chr3L_2305001 RAL-176 894 chr3L 2355446 2355458 chr3L 2355634 2355643 4 187 2.5 1.5 2.0 1.3 197 chr3L 2355446 intergenic not near genes chr3L 2355544 intergenic not near genes chr3L 2355643 intergenic not near genes chr3L_4_2355001 chr3L_2355001 RAL-176 895 chr3L 2447502 2447538 chr3L 2456658 2456694 roo 22 9154 7.0 5.5 6.2 3.1 9192 chr3L 2447502 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456694 intron CG45186 + chr3L_22_2450001 chr3L_2450001 RAL-176 896 chr3L 2460660 2460681 chr3L 2460789 2460817 8 132 14.0 7.0 10.5 0.7 157 chr3L 2460660 intron CG45186 + chr3L 2460738 intron CG45186 + chr3L 2460817 intron CG45186 + chr3L_8_2460001 chr3L_2460001 RAL-176 897 chr3L 2515397 2515430 chr3L 2515479 2515512 12 82 4.0 6.5 5.2 1.9 115 chr3L 2515397 intron Spn - chr3L 2515454 intron Spn - chr3L 2515512 intron Spn - chr3L_12_2515001 chr3L_2515001 RAL-176 898 chr3L 2533648 2533682 chr3L 2533730 2533764 30 80 10.0 11.5 10.8 2.5 116 chr3L 2533648 intron Spn - chr3L 2533706 intron Spn - chr3L 2533764 intron Spn - chr3L_30_2530001 chr3L_2530001 RAL-176 899 chr3L 2561528 2561560 chr3L 2561605 2561636 12 77 4.0 3.0 3.5 2.7 108 chr3L 2561528 intron msn - chr3L 2561582 intron msn - chr3L 2561636 intron msn - chr3L_12_2560001 chr3L_2560001 RAL-176 900 chr3L 2581898 2581915 chr3L 2581992 2582009 4 94 3.0 0.0 1.5 1.6 111 chr3L 2581898 intron msn - chr3L 2581954 intron msn - chr3L 2582009 intron msn - chr3L_4_2580001 chr3L_2580001 RAL-176 901 chr3L 2591712 2591744 chr3L 2591799 2591831 11 87 2.5 2.0 2.2 3.4 119 chr3L 2591712 intron dos + chr3L 2591772 intron dos + chr3L 2591831 intron dos + chr3L_11_2590001 chr3L_2590001 RAL-176 902 chr3L 2626410 2626443 chr3L 2626534 2626567 16 124 6.5 6.5 6.5 2.1 157 chr3L 2626410 intron Pxn - chr3L 2626488 intron Pxn - chr3L 2626567 intron Pxn - chr3L_16_2625001 chr3L_2625001 RAL-176 903 chr3L 2683943 2683979 chr3L 2684019 2684055 24 76 4.0 4.5 4.2 4.6 112 chr3L 2683943 intron Fife - chr3L 2683999 intron Fife - chr3L 2684055 intron Fife - chr3L_24_2680001 chr3L_2680001 RAL-176 904 chr3L 2795724 2795756 chr3L 2795847 2795879 13 122 2.0 6.0 4.0 2.6 155 chr3L 2795724 intron CG43444 - chr3L 2795802 intron CG43444 - chr3L 2795879 intron CG43444 - chr3L_13_2795001 chr3L_2795001 RAL-176 905 chr3L 2854480 2854501 chr3L 2854555 2854577 7 74 9.0 3.0 6.0 1.0 97 chr3L 2854480 intron CG43444 - chr3L 2854528 intron CG43444 - chr3L 2854577 intron CG43444 - chr3L_7_2850001 chr3L_2850001 RAL-176 906 chr3L 2865098 2865133 chr3L 2865182 2865185 13 77 0.5 2.5 1.5 5.2 87 chr3L 2865098 intron CG43444 - chr3L 2865142 intron CG43444 - chr3L 2865185 intron CG43444 - chr3L_13_2865001 chr3L_2865001 RAL-176 907 chr3L 2882130 2882143 chr3L 2882206 2882219 8 76 2.0 4.0 3.0 2.0 89 chr3L 2882130 intergenic not near genes chr3L 2882174 intergenic not near genes chr3L 2882219 intergenic not near genes chr3L_8_2880001 chr3L_2880001 RAL-176 908 chr3L 2927840 2927851 chr3L 2936117 2936128 Tirant 5 8277 8.0 1.0 4.5 0.9 8288 chr3L 2927840 intron Shab + chr3L 2931984 intron Shab + chr3L 2936128 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-176 909 chr3L 2927854 2927869 chr3L 2936116 2936146 Tirant 4 8273 5.5 1.0 3.2 1.0 8292 chr3L 2927854 intron Shab + chr3L 2932000 intron Shab + chr3L 2936146 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-176 910 chr3L 2966723 2966732 chr3L 2974147 2974156 mdg1 4 7424 7.0 2.5 4.8 0.7 7433 chr3L 2966723 intergenic not near genes chr3L 2970440 intergenic not near genes chr3L 2974156 intergenic not near genes chr3L_4_2970001 chr3L_2970001 RAL-176 911 chr3L 2977525 2977544 chr3L 2978010 2978028 5 484 6.5 9.0 7.8 0.6 503 chr3L 2977525 intergenic not near genes chr3L 2977776 intergenic not near genes chr3L 2978028 intergenic not near genes chr3L_5_2975001 chr3L_2975001 RAL-176 912 chr3L 2999700 2999712 chr3L 2999888 2999900 4 188 3.0 2.0 2.5 1.1 200 chr3L 2999700 intergenic not near genes chr3L 2999800 intergenic not near genes chr3L 2999900 intergenic not near genes chr3L_4_2995001 chr3L_2995001 RAL-176 913 chr3L 3061291 3061297 chr3L 3069871 3069871 Tirant 4 8579 28.5 8.5 18.5 0.2 8580 chr3L 3061291 intron CG32486 - chr3L 3065581 intron CG32486 - chr3L 3069871 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-176 914 chr3L 3061299 3061317 chr3L 3069866 3069872 Tirant 9 8576 12.0 6.5 9.2 0.9 8573 chr3L 3061299 intron CG32486 - chr3L 3065586 intron CG32486 - chr3L 3069872 intron CG32486 - chr3L_9_3065001 chr3L_3065001 RAL-176 915 chr3L 3259822 3259826 chr3L 3259922 3259925 4 100 0.5 3.0 1.8 1.4 103 chr3L 3259822 intron ckd + chr3L 3259874 intron ckd + chr3L 3259925 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-176 916 chr3L 3272314 3272347 chr3L 3272395 3272428 4 81 1.0 1.5 1.2 1.8 114 chr3L 3272314 intron CG14960 + chr3L 3272371 intron CG14960 + chr3L 3272428 intron CG14960 + chr3L_4_3270001 chr3L_3270001 RAL-176 917 chr3L 3281457 3281473 chr3L 3281933 3281969 Doc 11 490 5.0 4.5 4.8 1.9 512 chr3L 3281457 intron CG12017 + chr3L 3281713 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_11_3280001 chr3L_3280001 RAL-176 918 chr3L 3305765 3305775 chr3L 3305834 3305856 5 76 0.0 6.0 3.0 1.2 91 chr3L 3305765 intron ZnT63C + chr3L 3305810 intron ZnT63C + chr3L 3305856 intron ZnT63C + chr3L_5_3305001 chr3L_3305001 RAL-176 919 chr3L 3305776 3305780 chr3L 3305833 3305859 5 72 0.0 6.0 3.0 1.2 83 chr3L 3305776 intron ZnT63C + chr3L 3305818 intron ZnT63C + chr3L 3305859 intron ZnT63C + chr3L_5_3305001 chr3L_3305001 RAL-176 920 chr3L 3317541 3317556 chr3L 3317620 3317635 4 79 0.5 2.0 1.2 1.8 94 chr3L 3317541 intergenic Drsl5 +,PIG-C - chr3L 3317588 intergenic PIG-C -,Drsl5 + chr3L 3317635 intergenic PIG-C -,Drsl5 + chr3L_4_3315001 chr3L_3315001 RAL-176 921 chr3L 3475073 3475113 chr3L 3475517 3475557 jockey 16 444 2.5 8.5 5.5 2.5 484 chr3L 3475073 intron CG42324 + chr3L 3475315 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_16_3475001 chr3L_3475001 RAL-176 922 chr3L 3483537 3483566 chr3L 3483744 3483773 11 207 4.0 1.0 2.5 3.1 236 chr3L 3483537 intron CG42324 + chr3L 3483655 intron CG42324 + chr3L 3483773 intron CG42324 + chr3L_11_3480001 chr3L_3480001 RAL-176 923 chr3L 3503974 3503982 chr3L 3504081 3504089 5 107 0.0 4.0 2.0 1.7 115 chr3L 3503974 intron CG42324 + chr3L 3504032 intron CG42324 + chr3L 3504089 intron CG42324 + chr3L_5_3500001 chr3L_3500001 RAL-176 924 chr3L 3551439 3551471 chr3L 3551528 3551560 13 88 4.0 7.5 5.8 1.9 121 chr3L 3551439 intron Eip63E + chr3L 3551500 intron Eip63E + chr3L 3551560 intron Eip63E + chr3L_13_3550001 chr3L_3550001 RAL-176 925 chr3L 3565946 3565951 chr3L 3566015 3566027 5 73 13.0 3.0 8.0 0.6 81 chr3L 3565946 intron Eip63E + chr3L 3565986 intron Eip63E + chr3L 3566027 intron Eip63E + chr3L_5_3565001 chr3L_3565001 RAL-176 926 chr3L 3565955 3565962 chr3L 3566014 3566037 8 73 9.5 3.0 6.2 1.1 82 chr3L 3565955 intron Eip63E + chr3L 3565996 intron Eip63E + chr3L 3566037 intron Eip63E + chr3L_8_3565001 chr3L_3565001 RAL-176 927 chr3L 3566395 3566427 chr3L 3566478 3566510 7 83 2.5 1.5 2.0 2.3 115 chr3L 3566395 intron Eip63E + chr3L 3566452 intron Eip63E + chr3L 3566510 intron Eip63E + chr3L_7_3565001 chr3L_3565001 RAL-176 928 chr3L 3577738 3577766 chr3L 3577815 3577844 13 78 3.0 4.0 3.5 2.9 106 chr3L 3577738 intron Eip63E + chr3L 3577791 intron Eip63E + chr3L 3577844 intron Eip63E + chr3L_13_3575001 chr3L_3575001 RAL-176 929 chr3L 3601299 3601324 chr3L 3606609 3606633 copia 18 5310 7.5 5.0 6.2 2.5 5334 chr3L 3601299 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606633 intron Eip63E + chr3L_18_3600001 chr3L_3600001 RAL-176 930 chr3L 3627239 3627263 chr3L 3627344 3627368 7 103 0.5 1.0 0.8 3.9 129 chr3L 3627239 intron dar1 + chr3L 3627304 intron dar1 + chr3L 3627368 intron dar1 + chr3L_7_3625001 chr3L_3625001 RAL-176 931 chr3L 3665581 3665613 chr3L 3665657 3665690 12 77 3.0 2.5 2.8 3.2 109 chr3L 3665581 intergenic not near genes chr3L 3665636 intergenic not near genes chr3L 3665690 intergenic not near genes chr3L_12_3665001 chr3L_3665001 RAL-176 932 chr3L 3695495 3695513 chr3L 3695573 3695591 9 77 4.5 1.0 2.8 2.4 96 chr3L 3695495 intergenic not near genes chr3L 3695543 intergenic not near genes chr3L 3695591 intergenic not near genes chr3L_9_3695001 chr3L_3695001 RAL-176 933 chr3L 3795502 3795517 chr3L 3795675 3795690 5 173 2.5 4.0 3.2 1.2 188 chr3L 3795502 intron CG32264 - chr3L 3795596 intron CG32264 - chr3L 3795690 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-176 934 chr3L 3797246 3797264 chr3L 3797329 3797347 8 82 0.5 1.5 1.0 4.0 101 chr3L 3797246 intron CG32264 - chr3L 3797296 intron CG32264 - chr3L 3797347 intron CG32264 - chr3L_8_3795001 chr3L_3795001 RAL-176 935 chr3L 3833742 3833768 chr3L 3833983 3834009 pogo 7 241 2.0 0.5 1.2 3.2 267 chr3L 3833742 intron enc + chr3L 3833876 intron enc + chr3L 3834009 intron enc + chr3L_7_3830001 chr3L_3830001 RAL-176 936 chr3L 3890964 3890991 chr3L 3891045 3891072 5 81 4.0 0.0 2.0 1.7 108 chr3L 3890964 intergenic not near genes chr3L 3891018 intergenic not near genes chr3L 3891072 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-176 937 chr3L 3921398 3921425 chr3L 3921662 3921689 14 263 2.5 4.5 3.5 3.1 291 chr3L 3921398 intron Eip63F-1 - chr3L 3921544 intron Eip63F-1 - chr3L 3921689 intron Eip63F-1 - chr3L_14_3920001 chr3L_3920001 RAL-176 938 chr3L 3959943 3959977 chr3L 3960023 3960057 30 79 14.5 10.0 12.2 2.3 114 chr3L 3959943 intron CG12605 - chr3L 3960000 intron CG12605 - chr3L 3960057 intron CG12605 - chr3L_30_3960001 chr3L_3960001 RAL-176 939 chr3L 4170156 4170167 chr3L 4170234 4170244 4 77 1.0 2.5 1.8 1.4 88 chr3L 4170156 intergenic Ero1L + chr3L 4170200 intergenic Ero1L + chr3L 4170244 intergenic Ero1L + chr3L_4_4170001 chr3L_4170001 RAL-176 940 chr3L 4195135 4195173 chr3L 4195239 4195276 16 98 6.5 4.0 5.2 2.6 141 chr3L 4195135 exon CG43367 + chr3L 4195206 intron CG43367 + chr3L 4195276 intron CG43367 + chr3L_16_4195001 chr3L_4195001 RAL-176 941 chr3L 4223300 4223335 chr3L 4223413 4223448 24 112 7.0 4.0 5.5 3.7 148 chr3L 4223300 3` UTR CG43367 + chr3L 4223374 3` UTR CG43367 + chr3L 4223448 3` UTR CG43367 + chr3L_24_4220001 chr3L_4220001 RAL-176 942 chr3L 4256902 4256932 chr3L 4260224 4260254 20 3322 62.0 50.0 56.0 0.4 3352 chr3L 4256902 exon CG15011 - chr3L 4258578 exon CG15011 - chr3L 4260254 exon CG1309 + chr3L_20_4255001 chr3L_4255001 RAL-176 943 chr3L 4328754 4328761 chr3L 4336249 4336258 412 5 7497 3.0 5.0 4.0 1.0 7504 chr3L 4328754 intron Cip4 - chr3L 4332506 intron Cip4 - chr3L 4336258 intron Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-176 944 chr3L 4337575 4337590 chr3L 4337684 4337699 5 108 2.0 5.5 3.8 1.0 124 chr3L 4337575 intron Cip4 - chr3L 4337637 intron Cip4 - chr3L 4337699 intron Cip4 - chr3L_5_4335001 chr3L_4335001 RAL-176 945 chr3L 4337591 4337593 chr3L 4337676 4337702 4 102 1.5 3.0 2.2 1.2 111 chr3L 4337591 intron Cip4 - chr3L 4337646 intron Cip4 - chr3L 4337702 intron Cip4 - chr3L_4_4335001 chr3L_4335001 RAL-176 946 chr3L 4341331 4341331 chr3L 21448026 21448027 4 17106696 25.5 14.5 20.0 0.2 17106696 chr3L 4341331 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-176 947 chr3L 4597215 4597245 chr3L 4597294 4597326 14 80 3.5 3.5 3.5 3.1 111 chr3L 4597215 intron Src64B - chr3L 4597270 intron Src64B - chr3L 4597326 intron Src64B - chr3L_14_4595001 chr3L_4595001 RAL-176 948 chr3L 4638774 4638791 chr3L 4638877 4638882 9 101 2.0 6.0 4.0 1.8 108 chr3L 4638774 intron axo - chr3L 4638828 intron axo - chr3L 4638882 intron axo - chr3L_9_4635001 chr3L_4635001 RAL-176 949 chr3L 4652574 4652599 chr3L 4652657 4652682 9 82 5.0 3.0 4.0 1.8 108 chr3L 4652574 intron axo - chr3L 4652628 intron axo - chr3L 4652682 intron axo - chr3L_9_4650001 chr3L_4650001 RAL-176 950 chr3L 4657968 4657997 chr3L 4658430 4658438 13 458 2.0 3.0 2.5 3.7 470 chr3L 4657968 intron axo - chr3L 4658203 intron axo - chr3L 4658438 intron axo - chr3L_13_4655001 chr3L_4655001 RAL-176 951 chr3L 4668396 4668404 chr3L 4668770 4668778 6 373 0.0 3.5 1.8 2.1 382 chr3L 4668396 intron axo - chr3L 4668587 intron axo - chr3L 4668778 intron axo - chr3L_6_4665001 chr3L_4665001 RAL-176 952 chr3L 4674155 4674186 chr3L 4674241 4674272 22 86 9.0 8.5 8.8 2.2 117 chr3L 4674155 intron axo - chr3L 4674214 intron axo - chr3L 4674272 intron axo - chr3L_22_4670001 chr3L_4670001 RAL-176 953 chr3L 4676037 4676053 chr3L 4676118 4676134 8 81 4.5 0.0 2.2 2.5 97 chr3L 4676037 intron axo - chr3L 4676086 intron axo - chr3L 4676134 intron axo - chr3L_8_4675001 chr3L_4675001 RAL-176 954 chr3L 4699295 4699312 chr3L 4699375 4699392 5 80 0.5 1.5 1.0 2.5 97 chr3L 4699295 intron RhoGEF64C + chr3L 4699344 intron RhoGEF64C + chr3L 4699392 intron RhoGEF64C + chr3L_5_4695001 chr3L_4695001 RAL-176 955 chr3L 4839544 4839577 chr3L 4839621 4839654 17 76 2.5 2.0 2.2 5.3 110 chr3L 4839544 intron CG13707 - chr3L 4839599 intron CG13707 - chr3L 4839654 intron CG13707 - chr3L_17_4835001 chr3L_4835001 RAL-176 956 chr3L 4858305 4858337 chr3L 4858395 4858405 9 86 4.5 10.0 7.2 1.1 100 chr3L 4858305 intergenic not near genes chr3L 4858355 intergenic not near genes chr3L 4858405 intergenic not near genes chr3L_9_4855001 chr3L_4855001 RAL-176 957 chr3L 4901128 4901154 chr3L 4907318 4907344 diver 6 6190 4.0 0.5 2.2 1.9 6216 chr3L 4901128 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_6_4900001 chr3L_4900001 RAL-176 958 chr3L 4907977 4907989 chr3L 4908053 4908065 10 76 3.0 2.0 2.5 2.9 88 chr3L 4907977 intergenic not near genes chr3L 4908021 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_10_4905001 chr3L_4905001 RAL-176 959 chr3L 5045460 5045482 chr3L 5050241 5050263 Doc 10 4781 1.5 2.5 2.0 3.3 4803 chr3L 5045460 intron Con - chr3L 5047862 intron Con - chr3L 5050263 intron Con - chr3L_10_5045001 chr3L_5045001 RAL-176 960 chr3L 5101214 5101231 chr3L 5101294 5101310 4 80 0.0 1.5 0.8 2.2 96 chr3L 5101214 intergenic not near genes chr3L 5101262 intergenic not near genes chr3L 5101310 intergenic not near genes chr3L_4_5100001 chr3L_5100001 RAL-176 961 chr3L 5104485 5104510 chr3L 5124618 5124644 8 20134 4.5 5.5 5.0 1.3 20159 chr3L 5104485 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_8_5110001 chr3L_5110001 RAL-176 962 chr3L 5152369 5152375 chr3L 5152452 5152464 4 88 10.5 5.0 7.8 0.5 95 chr3L 5152369 5` UTR Gen - chr3L 5152416 intergenic Gen -,Srp54k + chr3L 5152464 intergenic Gen -,Srp54k + chr3L_4_5150001 chr3L_5150001 RAL-176 963 chr3L 5212239 5212270 chr3L 5212322 5212353 22 82 7.5 4.0 5.8 3.2 114 chr3L 5212239 intron shep - chr3L 5212296 intron shep - chr3L 5212353 intron shep - chr3L_22_5210001 chr3L_5210001 RAL-176 964 chr3L 5256699 5256712 chr3L 5256784 5256799 6 86 12.5 3.0 7.8 0.7 100 chr3L 5256699 intron shep - chr3L 5256749 intron shep - chr3L 5256799 intron shep - chr3L_6_5255001 chr3L_5255001 RAL-176 965 chr3L 5271167 5271202 chr3L 5271245 5271280 4 78 0.0 0.0 0.0 4.0 113 chr3L 5271167 intron shep - chr3L 5271224 intron shep - chr3L 5271280 intron shep - chr3L_4_5270001 chr3L_5270001 RAL-176 966 chr3L 5315213 5315246 chr3L 5315638 5315651 17 424 1.5 5.0 3.2 4.0 438 chr3L 5315213 intergenic not near genes chr3L 5315432 intergenic not near genes chr3L 5315651 intergenic not near genes chr3L_17_5315001 chr3L_5315001 RAL-176 967 chr3L 5482939 5482975 chr3L 5483262 5483265 4 314 1.5 69.5 35.5 0.1 326 chr3L 5482939 exon CG4835 + chr3L 5483102 exon CG4835 + chr3L 5483265 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-176 968 chr3L 5498414 5498433 chr3L 5498491 5498510 6 77 1.0 4.0 2.5 1.7 96 chr3L 5498414 exon blanks - chr3L 5498462 exon blanks - chr3L 5498510 exon blanks - chr3L_6_5495001 chr3L_5495001 RAL-176 969 chr3L 5505079 5505099 chr3L 6895713 6895714 4 1390627 27.0 26.0 26.5 0.1 1390635 chr3L 5505079 exon CG34342 - chr3L 6200396 intergenic Trn +,CG8219 + chr3L 6895714 intergenic not near genes chr3L_4_6200001 chr3L_6200001 RAL-176 970 chr3L 5692023 5692048 chr3L 5692100 5692125 14 77 8.5 6.5 7.5 1.6 102 chr3L 5692023 intron sif + chr3L 5692074 intron sif + chr3L 5692125 intron sif + chr3L_14_5690001 chr3L_5690001 RAL-176 971 chr3L 5910037 5910061 chr3L 5910278 5910302 pogo 12 241 1.5 5.0 3.2 2.9 265 chr3L 5910037 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_12_5910001 chr3L_5910001 RAL-176 972 chr3L 5926316 5926327 chr3L 5926506 5926517 BS 5 187 7.0 8.5 7.8 0.6 201 chr3L 5926316 intron Vap-33B + chr3L 5926416 intron Vap-33B + chr3L 5926517 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-176 973 chr3L 5926330 5926352 chr3L 5926503 5926504 BS 12 178 4.5 8.5 6.5 1.6 174 chr3L 5926330 intron Vap-33B + chr3L 5926417 intron Vap-33B + chr3L 5926504 intron Vap-33B + chr3L_12_5925001 chr3L_5925001 RAL-176 974 chr3L 5980589 5980617 chr3L 5980676 5980704 17 86 5.0 4.0 4.5 3.1 115 chr3L 5980589 intergenic not near genes chr3L 5980646 intergenic not near genes chr3L 5980704 intergenic not near genes chr3L_17_5980001 chr3L_5980001 RAL-176 975 chr3L 6001682 6001714 chr3L 6004382 6004414 jockey 7 2700 3.0 0.5 1.8 2.5 2732 chr3L 6001682 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-176 976 chr3L 6040365 6040394 chr3L 6042721 6042750 Doc 9 2356 5.0 2.5 3.8 1.9 2385 chr3L 6040365 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042750 intergenic not near genes chr3L_9_6040001 chr3L_6040001 RAL-176 977 chr3L 6052142 6052150 chr3L 6052228 6052236 5 86 0.0 5.0 2.5 1.4 94 chr3L 6052142 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052189 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052236 intergenic Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-176 978 chr3L 6052657 6052659 chr3L 6052741 6052744 4 84 21.0 52.0 36.5 0.1 87 chr3L 6052657 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052744 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-176 979 chr3L 6220914 6220948 chr3L 6230066 6230090 roo 15 9150 3.5 4.0 3.8 3.1 9176 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225502 intergenic not near genes chr3L 6230090 intergenic not near genes chr3L_15_6225001 chr3L_6225001 RAL-176 980 chr3L 6335008 6335035 chr3L 6335479 6335506 297 7 471 5.0 5.0 5.0 1.2 498 chr3L 6335008 intron CG13300 - chr3L 6335257 intron CG13300 - chr3L 6335506 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-176 981 chr3L 6632416 6632448 chr3L 6632503 6632534 16 87 4.5 4.5 4.5 2.9 118 chr3L 6632416 intron GluRIA + chr3L 6632475 intron GluRIA + chr3L 6632534 intron GluRIA + chr3L_16_6630001 chr3L_6630001 RAL-176 982 chr3L 6642880 6642887 chr3L 6642960 6642967 4 80 0.0 0.0 0.0 4.0 87 chr3L 6642880 intergenic CR45239 + chr3L 6642924 intergenic CR45239 + chr3L 6642967 intergenic CR45239 + chr3L_4_6640001 chr3L_6640001 RAL-176 983 chr3L 6652079 6652110 chr3L 6652156 6652188 25 77 8.0 6.0 7.0 3.1 109 chr3L 6652079 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652188 intergenic not near genes chr3L_25_6650001 chr3L_6650001 RAL-176 984 chr3L 6706430 6706448 chr3L 6706506 6706527 5 78 1.5 3.0 2.2 1.6 97 chr3L 6706430 intron CG8519 + chr3L 6706478 intron CG8519 + chr3L 6706527 intron CG8519 + chr3L_5_6705001 chr3L_6705001 RAL-176 985 chr3L 6707190 6707223 chr3L 6707269 6707302 17 75 5.0 6.0 5.5 2.6 112 chr3L 6707190 intron CG8519 + chr3L 6707246 intron CG8519 + chr3L 6707302 intron CG8519 + chr3L_17_6705001 chr3L_6705001 RAL-176 986 chr3L 6855940 6855954 chr3L 6860722 6860738 Doc 4 4782 9.0 13.5 11.2 0.3 4798 chr3L 6855940 intergenic not near genes chr3L 6858339 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-176 987 chr3L 6887522 6887537 chr3L 6895013 6895029 roo 4 7492 4.5 3.0 3.8 0.8 7507 chr3L 6887522 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895029 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-176 988 chr3L 6900894 6900904 chr3L 6900970 6900980 6 76 0.0 6.5 3.2 1.4 86 chr3L 6900894 intergenic not near genes chr3L 6900937 intergenic not near genes chr3L 6900980 intergenic not near genes chr3L_6_6900001 chr3L_6900001 RAL-176 989 chr3L 6908015 6908024 chr3L 6908100 6908109 4 85 8.5 0.5 4.5 0.7 94 chr3L 6908015 intergenic not near genes chr3L 6908062 intergenic not near genes chr3L 6908109 intergenic not near genes chr3L_4_6905001 chr3L_6905001 RAL-176 990 chr3L 6934336 6934365 chr3L 6934447 6934476 11 111 2.0 4.0 3.0 2.8 140 chr3L 6934336 exon CG14820 + chr3L 6934406 intron CG14820 + chr3L 6934476 intron CG14820 + chr3L_11_6930001 chr3L_6930001 RAL-176 991 chr3L 6990723 6990751 chr3L 6990803 6990831 13 80 4.5 7.0 5.8 1.9 108 chr3L 6990723 5` UTR bin + chr3L 6990777 5` UTR bin + chr3L 6990831 exon bin + chr3L_13_6990001 chr3L_6990001 RAL-176 992 chr3L 7033174 7033203 chr3L 7033254 7033283 23 78 6.0 6.0 6.0 3.3 109 chr3L 7033174 intron Mp + chr3L 7033228 intron Mp + chr3L 7033283 intron Mp + chr3L_23_7030001 chr3L_7030001 RAL-176 993 chr3L 7216135 7216141 chr3L 7216212 7216219 6 78 6.5 11.5 9.0 0.6 84 chr3L 7216135 intergenic not near genes chr3L 7216177 intergenic not near genes chr3L 7216219 intergenic not near genes chr3L_6_7215001 chr3L_7215001 RAL-176 994 chr3L 7244933 7244965 chr3L 7245024 7245054 31 91 6.5 4.0 5.2 5.0 121 chr3L 7244933 exon mei-P22 + chr3L 7244994 exon mei-P22 + chr3L 7245054 exon mei-P22 + chr3L_31_7240001 chr3L_7240001 RAL-176 995 chr3L 7276160 7276171 chr3L 7276236 7276248 8 76 4.0 4.5 4.2 1.5 88 chr3L 7276160 intron unc-13-4A - chr3L 7276204 intron unc-13-4A - chr3L 7276248 intron unc-13-4A - chr3L_8_7275001 chr3L_7275001 RAL-176 996 chr3L 7285451 7285475 chr3L 7285526 7285553 19 77 4.5 5.0 4.8 3.3 102 chr3L 7285451 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285553 intron unc-13-4A - chr3L_19_7285001 chr3L_7285001 RAL-176 997 chr3L 7377315 7377348 chr3L 7380420 7380451 297 10 3104 2.5 5.5 4.0 2.0 3136 chr3L 7377315 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380451 intron SMSr - chr3L_10_7375001 chr3L_7375001 RAL-176 998 chr3L 7393129 7393160 chr3L 7393300 7393334 7 173 4.5 1.5 3.0 1.8 205 chr3L 7393129 intron CG8563 + chr3L 7393232 intron CG8563 + chr3L 7393334 intron CG8563 + chr3L_7_7390001 chr3L_7390001 RAL-176 999 chr3L 7442951 7442964 chr3L 7443046 7443058 8 94 6.0 3.5 4.8 1.4 107 chr3L 7442951 intron CG42458 + chr3L 7443004 intron CG42458 + chr3L 7443058 intron CG42458 + chr3L_8_7440001 chr3L_7440001 RAL-176 1000 chr3L 7449440 7449455 chr3L 7449520 7449527 20 79 0.0 12.0 6.0 2.9 87 chr3L 7449440 intron CG42458 + chr3L 7449484 intron CG42458 + chr3L 7449527 intron CG42458 + chr3L_20_7445001 chr3L_7445001 RAL-176 1001 chr3L 7450688 7450715 chr3L 7450771 7450798 9 83 4.0 4.5 4.2 1.7 110 chr3L 7450688 intron CG42458 + chr3L 7450743 intron CG42458 + chr3L 7450798 intron CG42458 + chr3L_9_7450001 chr3L_7450001 RAL-176 1002 chr3L 7498759 7498785 chr3L 7503536 7503562 F-element 6 4777 3.0 0.5 1.8 2.1 4803 chr3L 7498759 5` UTR CG8539 - chr3L 7501160 intergenic not near genes chr3L 7503562 intergenic not near genes chr3L_6_7500001 chr3L_7500001 RAL-176 1003 chr3L 7640710 7640744 chr3L 7640833 7640867 15 123 1.0 3.5 2.2 4.7 157 chr3L 7640710 intergenic CG7506 -,CG33276 - chr3L 7640788 intergenic CG7506 -,CG33276 - chr3L 7640867 exon CG7506 - chr3L_15_7640001 chr3L_7640001 RAL-176 1004 chr3L 7642747 7642781 chr3L 7642834 7642868 10 87 2.5 4.0 3.2 2.4 121 chr3L 7642747 intergenic not near genes chr3L 7642808 intergenic not near genes chr3L 7642868 intergenic not near genes chr3L_10_7640001 chr3L_7640001 RAL-176 1005 chr3L 7711835 7711842 chr3L 7711911 7711918 4 76 3.0 6.5 4.8 0.7 83 chr3L 7711835 intron,intron CG32373 +,Ank2 - chr3L 7711876 intron,intron CG32373 +,Ank2 - chr3L 7711918 intron,intron CG32373 +,Ank2 - chr3L_4_7710001 chr3L_7710001 RAL-176 1006 chr3L 7711850 7711856 chr3L 7711902 7711932 4 67 1.5 5.0 3.2 1.0 82 chr3L 7711850 intron,intron CG32373 +,Ank2 - chr3L 7711891 intron,intron CG32373 +,Ank2 - chr3L 7711932 intron,intron CG32373 +,Ank2 - chr3L_4_7710001 chr3L_7710001 RAL-176 1007 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 13.0 22.0 17.5 0.2 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-176 1008 chr3L 7761430 7761461 chr3L 7761505 7761538 8 76 5.5 2.5 4.0 1.6 108 chr3L 7761430 intron Hn + chr3L 7761484 intron Hn + chr3L 7761538 intron Hn + chr3L_8_7760001 chr3L_7760001 RAL-176 1009 chr3L 7792054 7792084 chr3L 7792138 7792166 15 83 3.5 2.5 3.0 3.8 112 chr3L 7792054 intron CG32369 - chr3L 7792110 intron CG32369 - chr3L 7792166 intron CG32369 - chr3L_15_7790001 chr3L_7790001 RAL-176 1010 chr3L 7793712 7793744 chr3L 7800764 7800796 297 14 7052 3.5 1.0 2.2 4.4 7084 chr3L 7793712 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_14_7795001 chr3L_7795001 RAL-176 1011 chr3L 7886513 7886545 chr3L 7889031 7889063 Stalker4 16 2516 4.0 3.5 3.8 3.3 2550 chr3L 7886513 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_16_7885001 chr3L_7885001 RAL-176 1012 chr3L 7985362 7985397 chr3L 7987690 7987725 NOF 7 2327 5.5 2.0 3.8 1.5 2363 chr3L 7985362 intron nmo + chr3L 7986544 intron nmo + chr3L 7987725 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-176 1013 chr3L 8058875 8058891 chr3L 8058958 8058974 4 83 6.0 1.5 3.8 0.8 99 chr3L 8058875 intergenic bip1 - chr3L 8058924 intergenic bip1 - chr3L 8058974 intergenic bip1 - chr3L_4_8055001 chr3L_8055001 RAL-176 1014 chr3L 8226718 8226749 chr3L 8226817 8226848 6 99 1.0 0.0 0.5 4.0 130 chr3L 8226718 intergenic not near genes chr3L 8226783 intergenic not near genes chr3L 8226848 intergenic not near genes chr3L_6_8225001 chr3L_8225001 RAL-176 1015 chr3L 8295791 8295825 chr3L 8295949 8295983 14 158 5.0 5.0 5.0 2.3 192 chr3L 8295791 intergenic CG7201 - chr3L 8295887 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_14_8295001 chr3L_8295001 RAL-176 1016 chr3L 8481789 8481806 chr3L 8490933 8490954 roo 9 9148 3.0 6.5 4.8 1.6 9165 chr3L 8481789 intron CG43163 - chr3L 8486372 intron CG43163 - chr3L 8490954 intron CG43163 - chr3L_9_8485001 chr3L_8485001 RAL-176 1017 chr3L 8498304 8498330 chr3L 8505771 8505797 blood 6 7467 0.0 3.0 1.5 2.4 7493 chr3L 8498304 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505797 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-176 1018 chr3L 8577297 8577322 chr3L 8577402 8577426 21 103 12.0 8.5 10.2 1.9 129 chr3L 8577297 5` UTR CG43078 + chr3L 8577362 5` UTR CG43078 + chr3L 8577426 5` UTR CG43078 + chr3L_21_8575001 chr3L_8575001 RAL-176 1019 chr3L 8643574 8643605 chr3L 8643650 8643681 13 76 2.0 2.5 2.2 4.1 107 chr3L 8643574 3` UTR Cpr66D + chr3L 8643628 intergenic Cpr66D + chr3L 8643681 intergenic Cpr66D + chr3L_13_8640001 chr3L_8640001 RAL-176 1020 chr3L 8682609 8682641 chr3L 8682696 8682728 12 87 2.5 1.5 2.0 4.0 119 chr3L 8682609 intergenic not near genes chr3L 8682668 intergenic not near genes chr3L 8682728 intergenic not near genes chr3L_12_8680001 chr3L_8680001 RAL-176 1021 chr3L 8791277 8791292 chr3L 8796697 8796712 I-element 6 5420 7.5 0.0 3.8 1.2 5435 chr3L 8791277 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796712 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-176 1022 chr3L 8830752 8830782 chr3L 8830852 8830882 31 100 10.5 5.0 7.8 3.5 130 chr3L 8830752 intron dally + chr3L 8830817 intron dally + chr3L 8830882 intron dally + chr3L_31_8830001 chr3L_8830001 RAL-176 1023 chr3L 8839726 8839750 chr3L 8839806 8839820 6 78 1.5 0.5 1.0 3.0 94 chr3L 8839726 intron dally + chr3L 8839773 intron dally + chr3L 8839820 intron dally + chr3L_6_8835001 chr3L_8835001 RAL-176 1024 chr3L 8853353 8853386 chr3L 8853433 8853462 23 78 3.5 1.5 2.5 6.6 109 chr3L 8853353 intron dally + chr3L 8853408 intron dally + chr3L 8853462 intron dally + chr3L_23_8850001 chr3L_8850001 RAL-176 1025 chr3L 8884401 8884426 chr3L 8884600 8884625 14 198 6.5 0.5 3.5 3.1 224 chr3L 8884401 intron dally + chr3L 8884513 intron dally + chr3L 8884625 intron dally + chr3L_14_8880001 chr3L_8880001 RAL-176 1026 chr3L 9013691 9013692 chr3L 18417066 18417066 4 9403374 42.0 33.0 37.5 0.1 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-176 1027 chr3L 9076929 9076957 chr3L 9084488 9084517 412 18 7559 8.0 4.5 6.2 2.5 7588 chr3L 9076929 exon Tequila + chr3L 9080723 intron Tequila + chr3L 9084517 exon Tequila + chr3L_18_9080001 chr3L_9080001 RAL-176 1028 chr3L 9086910 9086923 chr3L 9086993 9087006 11 81 12.5 9.0 10.8 0.9 96 chr3L 9086910 exon Tequila + chr3L 9086958 exon Tequila + chr3L 9087006 exon Tequila + chr3L_11_9085001 chr3L_9085001 RAL-176 1029 chr3L 9086928 9086938 chr3L 9086992 9087015 6 79 9.5 9.0 9.2 0.6 87 chr3L 9086928 exon Tequila + chr3L 9086972 exon Tequila + chr3L 9087015 exon Tequila + chr3L_6_9085001 chr3L_9085001 RAL-176 1030 chr3L 9130571 9130582 chr3L 9134332 9134340 412 5 3760 9.5 16.0 12.8 0.4 3769 chr3L 9130571 intergenic bol - chr3L 9132456 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-176 1031 chr3L 9219244 9219257 chr3L 9219916 9219927 jockey 8 671 10.5 6.0 8.2 0.9 683 chr3L 9219244 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219927 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-176 1032 chr3L 9219259 9219281 chr3L 9219915 9219926 jockey 14 659 6.5 6.0 6.2 1.9 667 chr3L 9219259 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219926 intergenic not near genes chr3L_14_9215001 chr3L_9215001 RAL-176 1033 chr3L 9348470 9348488 chr3L 9348972 9348980 6 500 1.5 0.0 0.8 3.3 510 chr3L 9348470 intergenic PGRP-LC + chr3L 9348725 intergenic PGRP-LC + chr3L 9348980 intergenic not near genes chr3L_6_9345001 chr3L_9345001 RAL-176 1034 chr3L 9437946 9437966 chr3L 9438053 9438070 11 110 5.5 8.5 7.0 1.4 124 chr3L 9437946 intron MTF-1 + chr3L 9438008 intron MTF-1 + chr3L 9438070 intron MTF-1 + chr3L_11_9435001 chr3L_9435001 RAL-176 1035 chr3L 9443510 9443541 chr3L 9445301 9445332 S-element 14 1789 4.5 4.5 4.5 2.5 1822 chr3L 9443510 intron CG33926 + chr3L 9444421 intron CG33926 + chr3L 9445332 intron CG33926 + chr3L_14_9440001 chr3L_9440001 RAL-176 1036 chr3L 9524036 9524067 chr3L 9524110 9524120 15 77 3.5 5.0 4.2 2.9 84 chr3L 9524036 intron CG33700 - chr3L 9524078 intron CG33700 - chr3L 9524120 intron CG33700 - chr3L_15_9520001 chr3L_9520001 RAL-176 1037 chr3L 9533753 9533786 chr3L 9541313 9541346 412 7 7559 6.0 5.5 5.8 1.0 7593 chr3L 9533753 intergenic not near genes chr3L 9537550 intergenic not near genes chr3L 9541346 intergenic not near genes chr3L_7_9535001 chr3L_9535001 RAL-176 1038 chr3L 9575905 9575936 chr3L 9580983 9581014 jockey 13 5076 12.5 8.0 10.2 1.2 5109 chr3L 9575905 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581014 intron CG42673 + chr3L_13_9575001 chr3L_9575001 RAL-176 1039 chr3L 9684200 9684216 chr3L 9684298 9684312 6 98 6.0 0.5 3.2 1.4 112 chr3L 9684200 3` UTR CG6767 - chr3L 9684256 3` UTR CG6767 - chr3L 9684312 3` UTR CG6767 - chr3L_6_9680001 chr3L_9680001 RAL-176 1040 chr3L 9689507 9689542 chr3L 9689587 9689622 13 79 4.5 5.0 4.8 2.2 115 chr3L 9689507 intron CG6767 - chr3L 9689564 intron CG6767 - chr3L 9689622 intron CG6767 - chr3L_13_9685001 chr3L_9685001 RAL-176 1041 chr3L 9715596 9715627 chr3L 9715672 9715704 14 76 2.5 8.0 5.2 2.3 108 chr3L 9715596 intron vsg + chr3L 9715650 intron vsg + chr3L 9715704 intron vsg + chr3L_14_9715001 chr3L_9715001 RAL-176 1042 chr3L 9809727 9809738 chr3L 9809804 9809814 4 76 6.5 19.0 12.8 0.3 87 chr3L 9809727 intergenic not near genes chr3L 9809770 intergenic not near genes chr3L 9809814 intergenic not near genes chr3L_4_9805001 chr3L_9805001 RAL-176 1043 chr3L 9907876 9907895 chr3L 9907953 9907972 6 76 11.0 8.0 9.5 0.6 96 chr3L 9907876 intergenic CG34356 + chr3L 9907924 intergenic CG34356 + chr3L 9907972 intergenic CG34356 + chr3L_6_9905001 chr3L_9905001 RAL-176 1044 chr3L 9918881 9918912 chr3L 9918976 9919006 30 94 4.5 4.5 4.5 5.5 125 chr3L 9918881 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_30_9915001 chr3L_9915001 RAL-176 1045 chr3L 9929676 9929701 chr3L 9938456 9938477 roo 9 8775 3.0 10.0 6.5 1.2 8801 chr3L 9929676 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938477 intron CG34356 + chr3L_9_9930001 chr3L_9930001 RAL-176 1046 chr3L 9942403 9942417 chr3L 9942482 9942498 10 80 4.5 11.5 8.0 1.1 95 chr3L 9942403 intron CG34356 + chr3L 9942450 intron CG34356 + chr3L 9942498 intron CG34356 + chr3L_10_9940001 chr3L_9940001 RAL-176 1047 chr3L 10003158 10003180 chr3L 10003255 10003277 12 97 4.0 12.0 8.0 1.3 119 chr3L 10003158 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003277 intron dpr6 + chr3L_12_10000001 chr3L_10000001 RAL-176 1048 chr3L 10023893 10023917 chr3L 10024009 10024033 8 113 8.0 5.0 6.5 1.1 140 chr3L 10023893 intron dpr6 + chr3L 10023963 intron dpr6 + chr3L 10024033 intron dpr6 + chr3L_8_10020001 chr3L_10020001 RAL-176 1049 chr3L 10043880 10043912 chr3L 10043961 10043993 10 81 2.5 4.0 3.2 2.4 113 chr3L 10043880 intron dpr6 + chr3L 10043936 intron dpr6 + chr3L 10043993 intron dpr6 + chr3L_10_10040001 chr3L_10040001 RAL-176 1050 chr3L 10049546 10049569 chr3L 10049625 10049649 8 80 1.5 1.0 1.2 3.6 103 chr3L 10049546 intron dpr6 + chr3L 10049598 intron dpr6 + chr3L 10049649 intron dpr6 + chr3L_8_10045001 chr3L_10045001 RAL-176 1051 chr3L 10214731 10214828 chr3L 10214816 10214930 12 92 0.0 0.0 0.0 12.0 199 chr3L 10214731 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214930 intergenic not near genes chr3L_12_10210001 chr3L_10210001 RAL-176 1052 chr3L 10222746 10222773 chr3L 10222826 10222853 6 80 0.0 5.0 2.5 1.7 107 chr3L 10222746 intron scramb1 - chr3L 10222800 intron scramb1 - chr3L 10222853 intron scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-176 1053 chr3L 10302292 10302326 chr3L 10302382 10302410 20 88 4.0 2.5 3.2 4.8 118 chr3L 10302292 intergenic not near genes chr3L 10302351 intergenic not near genes chr3L 10302410 intergenic not near genes chr3L_20_10300001 chr3L_10300001 RAL-176 1054 chr3L 10308753 10308776 chr3L 10308830 10308853 8 77 5.5 6.5 6.0 1.1 100 chr3L 10308753 intergenic not near genes chr3L 10308803 intergenic not near genes chr3L 10308853 intergenic not near genes chr3L_8_10305001 chr3L_10305001 RAL-176 1055 chr3L 10362576 10362589 chr3L 10362664 10362677 4 88 1.0 1.5 1.2 1.8 101 chr3L 10362576 5` UTR CR44327 + chr3L 10362626 5` UTR CR44327 + chr3L 10362677 5` UTR CR44327 + chr3L_4_10360001 chr3L_10360001 RAL-176 1056 chr3L 10414942 10414962 chr3L 10417314 10417334 Doc 4 2372 2.5 1.0 1.8 1.4 2392 chr3L 10414942 intergenic CG12362 + chr3L 10416138 intergenic not near genes chr3L 10417334 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-176 1057 chr3L 10414974 10414979 chr3L 10417311 10417351 Doc 4 2363 1.0 1.0 1.0 2.0 2377 chr3L 10414974 intergenic CG12362 + chr3L 10416162 intergenic not near genes chr3L 10417351 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-176 1058 chr3L 10417571 10417587 chr3L 10417648 10417653 7 75 9.0 6.0 7.5 0.8 82 chr3L 10417571 intergenic not near genes chr3L 10417612 intergenic not near genes chr3L 10417653 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-176 1059 chr3L 10417591 10417605 chr3L 10417645 10417682 10 73 8.0 6.0 7.0 1.2 91 chr3L 10417591 intergenic not near genes chr3L 10417636 intergenic not near genes chr3L 10417682 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-176 1060 chr3L 10551460 10551488 chr3L 10551547 10551575 4 85 0.0 2.0 1.0 2.0 115 chr3L 10551460 intron A2bp1 + chr3L 10551518 intron A2bp1 + chr3L 10551575 intron A2bp1 + chr3L_4_10550001 chr3L_10550001 RAL-176 1061 chr3L 10553101 10553120 chr3L 10553183 10553202 8 82 5.0 6.0 5.5 1.2 101 chr3L 10553101 intron A2bp1 + chr3L 10553152 intron A2bp1 + chr3L 10553202 intron A2bp1 + chr3L_8_10550001 chr3L_10550001 RAL-176 1062 chr3L 10621856 10621861 chr3L 10621943 10621947 4 87 1.0 3.0 2.0 1.3 91 chr3L 10621856 intergenic not near genes chr3L 10621902 intergenic not near genes chr3L 10621947 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-176 1063 chr3L 10658078 10658208 chr3L 10658155 10658334 10 102 1.0 1.0 1.0 5.0 256 chr3L 10658078 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_10_10655001 chr3L_10655001 RAL-176 1064 chr3L 10753021 10753252 chr3L 10753126 10753406 16 142 2.0 2.5 2.2 5.0 385 chr3L 10753021 intergenic not near genes chr3L 10753214 intergenic not near genes chr3L 10753406 intergenic not near genes chr3L_16_10750001 chr3L_10750001 RAL-176 1065 chr3L 10762829 10762853 chr3L 10762913 10762933 18 82 12.5 4.5 8.5 1.9 104 chr3L 10762829 intergenic not near genes chr3L 10762881 intergenic not near genes chr3L 10762933 intergenic not near genes chr3L_18_10760001 chr3L_10760001 RAL-176 1066 chr3L 10778825 10778836 chr3L 10778899 10778912 5 74 0.0 6.5 3.2 1.2 87 chr3L 10778825 intergenic not near genes chr3L 10778868 intergenic not near genes chr3L 10778912 intergenic not near genes chr3L_5_10775001 chr3L_10775001 RAL-176 1067 chr3L 10847773 10847796 chr3L 10847868 10847891 4 95 1.5 2.5 2.0 1.3 118 chr3L 10847773 intergenic not near genes chr3L 10847832 intergenic not near genes chr3L 10847891 intergenic not near genes chr3L_4_10845001 chr3L_10845001 RAL-176 1068 chr3L 11018901 11018927 chr3L 11018978 11019005 17 77 2.0 5.5 3.8 3.5 104 chr3L 11018901 intergenic not near genes chr3L 11018953 intergenic not near genes chr3L 11019005 intergenic not near genes chr3L_17_11015001 chr3L_11015001 RAL-176 1069 chr3L 11087059 11087087 chr3L 11088846 11088874 S-element 10 1787 3.5 7.0 5.2 1.6 1815 chr3L 11087059 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_10_11085001 chr3L_11085001 RAL-176 1070 chr3L 11103255 11103274 chr3L 11108554 11108588 X-element 6 5306 9.0 2.0 5.5 0.9 5333 chr3L 11103255 intergenic CG32071 -,Elo68alpha - chr3L 11105922 intergenic not near genes chr3L 11108588 exon CG12522 + chr3L_6_11105001 chr3L_11105001 RAL-176 1071 chr3L 11264466 11264497 chr3L 11271418 11271445 17.6 8 6949 1.0 1.0 1.0 4.0 6979 chr3L 11264466 intergenic not near genes chr3L 11267956 intergenic not near genes chr3L 11271445 intergenic not near genes chr3L_8_11265001 chr3L_11265001 RAL-176 1072 chr3L 11290628 11290657 chr3L 11290951 11290979 14 322 2.5 5.0 3.8 2.9 351 chr3L 11290628 intron CG6175 - chr3L 11290804 intron CG6175 - chr3L 11290979 intron CG6175 - chr3L_14_11290001 chr3L_11290001 RAL-176 1073 chr3L 11329696 11329726 chr3L 11332900 11332925 jockey 7 3201 10.5 7.0 8.8 0.7 3229 chr3L 11329696 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332925 intergenic not near genes chr3L_7_11330001 chr3L_11330001 RAL-176 1074 chr3L 11364380 11364413 chr3L 11364488 11364520 20 106 4.0 11.5 7.8 2.3 140 chr3L 11364380 intron CG6163 - chr3L 11364450 intron CG6163 - chr3L 11364520 intron CG6163 - chr3L_20_11360001 chr3L_11360001 RAL-176 1075 chr3L 11426542 11426560 chr3L 11427242 11427261 9 700 8.5 1.5 5.0 1.5 719 chr3L 11426542 intergenic CG7560 + chr3L 11426902 intergenic not near genes chr3L 11427261 intergenic not near genes chr3L_9_11425001 chr3L_11425001 RAL-176 1076 chr3L 11432907 11432935 chr3L 11432985 11433014 7 79 3.5 2.0 2.8 1.8 107 chr3L 11432907 intergenic not near genes chr3L 11432960 intergenic not near genes chr3L 11433014 intergenic not near genes chr3L_7_11430001 chr3L_11430001 RAL-176 1077 chr3L 11443037 11443067 chr3L 11443205 11443235 9 168 0.0 5.0 2.5 2.6 198 chr3L 11443037 intergenic not near genes chr3L 11443136 intergenic not near genes chr3L 11443235 intergenic not near genes chr3L_9_11440001 chr3L_11440001 RAL-176 1078 chr3L 11493160 11493177 chr3L 11493242 11493259 4 82 1.0 1.5 1.2 1.8 99 chr3L 11493160 intron chrb + chr3L 11493210 intron chrb + chr3L 11493259 intron chrb + chr3L_4_11490001 chr3L_11490001 RAL-176 1079 chr3L 11594796 11594810 chr3L 11594943 11594957 4 147 4.0 8.0 6.0 0.6 161 chr3L 11594796 intergenic not near genes chr3L 11594876 intergenic not near genes chr3L 11594957 intergenic not near genes chr3L_4_11590001 chr3L_11590001 RAL-176 1080 chr3L 11678095 11678125 chr3L 11678182 11678212 13 87 2.0 4.0 3.0 3.2 117 chr3L 11678095 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_13_11675001 chr3L_11675001 RAL-176 1081 chr3L 11723083 11723113 chr3L 11727877 11727908 Doc 11 4795 4.0 1.0 2.5 3.1 4825 chr3L 11723083 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_11_11725001 chr3L_11725001 RAL-176 1082 chr3L 11744013 11744038 chr3L 11744119 11744145 8 107 9.0 0.0 4.5 1.5 132 chr3L 11744013 exon CG6024 - chr3L 11744079 intron CG6024 - chr3L 11744145 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-176 1083 chr3L 11756512 11756538 chr3L 11756598 11756623 5 85 1.0 1.5 1.2 2.3 111 chr3L 11756512 intron CG6024 - chr3L 11756568 intron CG6024 - chr3L 11756623 intron CG6024 - chr3L_5_11755001 chr3L_11755001 RAL-176 1084 chr3L 11757916 11757933 chr3L 11758013 11758030 6 97 11.0 0.0 5.5 0.9 114 chr3L 11757916 intron CG6024 - chr3L 11757973 intron CG6024 - chr3L 11758030 intron CG6024 - chr3L_6_11755001 chr3L_11755001 RAL-176 1085 chr3L 802565 802566 chr3L 11777678 11777678 8 10975112 41.0 22.0 31.5 0.2 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_6290001 chr3L_6290001 RAL-176 1086 chr3L 7749470 7749471 chr3L 11777678 11777678 7 4028208 13.0 22.0 17.5 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_9760001 chr3L_9760001 RAL-176 1087 chr3L 11816803 11816811 chr3L 11816892 11816912 7 97 6.5 2.5 4.5 1.3 109 chr3L 11816803 3` UTR CG5946 - chr3L 11816858 3` UTR CG5946 - chr3L 11816912 3` UTR CG5946 - chr3L_7_11815001 chr3L_11815001 RAL-176 1088 chr3L 11849331 11849356 chr3L 11849431 11849456 11 100 2.5 6.5 4.5 2.0 125 chr3L 11849331 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849456 intergenic not near genes chr3L_11_11845001 chr3L_11845001 RAL-176 1089 chr3L 11864553 11864583 chr3L 11865848 11865878 pogo 18 1294 6.0 0.5 3.2 4.3 1325 chr3L 11864553 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_18_11865001 chr3L_11865001 RAL-176 1090 chr3L 11887259 11887289 chr3L 11887356 11887395 10 98 0.0 0.5 0.2 8.3 136 chr3L 11887259 intron,3` UTR CG44837 -,CG5897 - chr3L 11887327 intron,3` UTR CG44837 -,CG5897 - chr3L 11887395 intron,3` UTR CG44837 -,CG5897 - chr3L_10_11885001 chr3L_11885001 RAL-176 1091 chr3L 11961211 11961215 chr3L 11961301 11961319 4 97 12.0 13.5 12.8 0.3 108 chr3L 11961211 exon prc - chr3L 11961265 exon prc - chr3L 11961319 exon prc - chr3L_4_11960001 chr3L_11960001 RAL-176 1092 chr3L 11961219 11961230 chr3L 11961296 11961307 5 84 4.5 12.0 8.2 0.5 88 chr3L 11961219 exon prc - chr3L 11961263 exon prc - chr3L 11961307 exon prc - chr3L_5_11960001 chr3L_11960001 RAL-176 1093 chr3L 12019329 12019347 chr3L 12019442 12019460 5 113 2.0 3.0 2.5 1.4 131 chr3L 12019329 intron rols - chr3L 12019394 intron rols - chr3L 12019460 intron rols - chr3L_5_12015001 chr3L_12015001 RAL-176 1094 chr3L 12052703 12052733 chr3L 12052792 12052821 7 89 2.5 1.0 1.8 2.5 118 chr3L 12052703 intron rols - chr3L 12052762 intron rols - chr3L 12052821 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-176 1095 chr3L 12075424 12075445 chr3L 12075513 12075534 7 88 7.0 0.0 3.5 1.6 110 chr3L 12075424 intron Sema-5c - chr3L 12075479 intron Sema-5c - chr3L 12075534 intron Sema-5c - chr3L_7_12075001 chr3L_12075001 RAL-176 1096 chr3L 12089081 12089109 chr3L 12089161 12089189 12 80 2.0 2.5 2.2 3.8 108 chr3L 12089081 3` UTR CG17154 + chr3L 12089135 3` UTR CG17154 + chr3L 12089189 3` UTR CG17154 + chr3L_12_12085001 chr3L_12085001 RAL-176 1097 chr3L 12119773 12119787 chr3L 12119870 12119884 7 97 0.5 3.0 1.8 2.5 111 chr3L 12119773 3` UTR ssp + chr3L 12119828 intergenic ssp +,CG11560 + chr3L 12119884 intergenic ssp +,CG11560 + chr3L_7_12115001 chr3L_12115001 RAL-176 1098 chr3L 12219566 12219596 chr3L 12219649 12219660 7 73 3.0 10.0 6.5 0.9 94 chr3L 12219566 intron app - chr3L 12219613 intron app - chr3L 12219660 intron app - chr3L_7_12215001 chr3L_12215001 RAL-176 1099 chr3L 12273102 12273134 chr3L 12273407 12273440 15 302 3.5 6.0 4.8 2.6 338 chr3L 12273102 intron CG4300 - chr3L 12273271 intron CG4300 - chr3L 12273440 intron CG4300 - chr3L_15_12270001 chr3L_12270001 RAL-176 1100 chr3L 12300847 12300882 chr3L 12300986 12301021 10 138 1.0 4.5 2.8 2.6 174 chr3L 12300847 intergenic CR44550 + chr3L 12300934 intergenic CR44550 + chr3L 12301021 5` UTR CR44550 + chr3L_10_12300001 chr3L_12300001 RAL-176 1101 chr3L 12304090 12304118 chr3L 12304166 12304187 21 74 5.5 13.5 9.5 2.0 97 chr3L 12304090 intergenic not near genes chr3L 12304138 intergenic not near genes chr3L 12304187 intergenic not near genes chr3L_21_12300001 chr3L_12300001 RAL-176 1102 chr3L 12369541 12369569 chr3L 12369631 12369659 8 90 1.5 3.0 2.2 2.5 118 chr3L 12369541 intron Ncc69 - chr3L 12369600 intron Ncc69 - chr3L 12369659 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-176 1103 chr3L 12476288 12476322 chr3L 12476364 12476398 10 76 2.5 5.0 3.8 2.1 110 chr3L 12476288 intron CG10663 - chr3L 12476343 intron CG10663 - chr3L 12476398 intron CG10663 - chr3L_10_12475001 chr3L_12475001 RAL-176 1104 chr3L 12578053 12578067 chr3L 12578141 12578155 7 88 2.5 3.0 2.8 1.8 102 chr3L 12578053 intergenic not near genes chr3L 12578104 intergenic not near genes chr3L 12578155 intergenic not near genes chr3L_7_12575001 chr3L_12575001 RAL-176 1105 chr3L 12615739 12615771 chr3L 12615815 12615847 14 74 8.0 8.5 8.2 1.5 108 chr3L 12615739 intron caup + chr3L 12615793 intron caup + chr3L 12615847 intron caup + chr3L_14_12615001 chr3L_12615001 RAL-176 1106 chr3L 12647953 12647976 chr3L 12648029 12648052 7 76 4.0 1.0 2.5 2.0 99 chr3L 12647953 5` UTR CR32111 + chr3L 12648002 5` UTR CR32111 + chr3L 12648052 5` UTR CR32111 + chr3L_7_12645001 chr3L_12645001 RAL-176 1107 chr3L 12705437 12705453 chr3L 12705519 12705535 6 81 6.5 18.0 12.2 0.5 98 chr3L 12705437 intron mirr + chr3L 12705486 intron mirr + chr3L 12705535 intron mirr + chr3L_6_12705001 chr3L_12705001 RAL-176 1108 chr3L 12720332 12720353 chr3L 12720413 12720434 8 84 2.0 2.5 2.2 2.5 102 chr3L 12720332 intergenic not near genes chr3L 12720383 intergenic not near genes chr3L 12720434 intergenic not near genes chr3L_8_12720001 chr3L_12720001 RAL-176 1109 chr3L 12874924 12874963 chr3L 12877216 12877255 jockey 13 2292 1.0 2.0 1.5 5.2 2331 chr3L 12874924 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_13_12875001 chr3L_12875001 RAL-176 1110 chr3L 12894801 12894816 chr3L 12894879 12894894 7 77 10.5 8.0 9.2 0.7 93 chr3L 12894801 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-176 1111 chr3L 12919279 12919282 chr3L 12924751 12924755 Rt1c 4 5472 8.5 5.0 6.8 0.5 5476 chr3L 12919279 intergenic not near genes chr3L 12922017 intergenic not near genes chr3L 12924755 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-176 1112 chr3L 12919284 12919291 chr3L 12924750 12924764 Rt1c 4 5471 6.0 5.0 5.5 0.6 5480 chr3L 12919284 intergenic not near genes chr3L 12922024 intergenic not near genes chr3L 12924764 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-176 1113 chr3L 12919293 12919311 chr3L 12924749 12924758 Rt1c 10 5466 3.5 5.0 4.2 1.9 5465 chr3L 12919293 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924758 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-176 1114 chr3L 12929734 12929741 chr3L 12930050 12930057 5 316 0.0 2.0 1.0 2.5 323 chr3L 12929734 intergenic not near genes chr3L 12929896 intergenic not near genes chr3L 12930057 intergenic not near genes chr3L_5_12925001 chr3L_12925001 RAL-176 1115 chr3L 12955427 12955461 chr3L 12955518 12955551 20 90 5.5 5.0 5.2 3.2 124 chr3L 12955427 intergenic not near genes chr3L 12955489 intergenic not near genes chr3L 12955551 intergenic not near genes chr3L_20_12955001 chr3L_12955001 RAL-176 1116 chr3L 12957786 12957817 chr3L 12962268 12962299 copia 10 4482 3.5 3.5 3.5 2.2 4513 chr3L 12957786 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_10_12960001 chr3L_12960001 RAL-176 1117 chr3L 13007694 13007725 chr3L 13007773 13007799 7 78 1.0 0.5 0.8 3.9 105 chr3L 13007694 exon CG11263 + chr3L 13007746 3` UTR CG11263 + chr3L 13007799 3` UTR CG11263 + chr3L_7_13005001 chr3L_13005001 RAL-176 1118 chr3L 13090882 13090913 chr3L 13090993 13091024 7 111 2.5 6.0 4.2 1.3 142 chr3L 13090882 intergenic not near genes chr3L 13090953 intergenic not near genes chr3L 13091024 intergenic not near genes chr3L_7_13090001 chr3L_13090001 RAL-176 1119 chr3L 13095831 13095836 chr3L 13095919 13095924 4 88 5.0 0.0 2.5 1.1 93 chr3L 13095831 intergenic not near genes chr3L 13095878 intergenic not near genes chr3L 13095924 intergenic not near genes chr3L_4_13095001 chr3L_13095001 RAL-176 1120 chr3L 13144124 13144146 chr3L 13144201 13144223 8 77 1.5 1.5 1.5 3.2 99 chr3L 13144124 intergenic not near genes chr3L 13144174 intergenic not near genes chr3L 13144223 intergenic not near genes chr3L_8_13140001 chr3L_13140001 RAL-176 1121 chr3L 13208365 13208373 chr3L 13208444 13208452 6 79 5.0 0.0 2.5 1.7 87 chr3L 13208365 intergenic CR45096 - chr3L 13208408 intergenic CR45096 - chr3L 13208452 intergenic CR45096 - chr3L_6_13205001 chr3L_13205001 RAL-176 1122 chr3L 13285174 13285179 chr3L 13285357 13285362 4 182 7.5 3.5 5.5 0.6 188 chr3L 13285174 intergenic CR45752 - chr3L 13285268 3` UTR CR45752 - chr3L 13285362 3` UTR CR45752 - chr3L_4_13285001 chr3L_13285001 RAL-176 1123 chr3L 13303590 13303603 chr3L 13303659 13303670 11 80 5.0 6.5 5.8 1.6 80 chr3L 13303590 5` UTR CR44555 + chr3L 13303630 5` UTR CR44555 + chr3L 13303670 5` UTR CR44555 + chr3L_11_13300001 chr3L_13300001 RAL-176 1124 chr3L 13304494 13304500 chr3L 13304809 13304815 4 315 1.5 5.0 3.2 1.0 321 chr3L 13304494 intergenic not near genes chr3L 13304654 intergenic not near genes chr3L 13304815 intergenic not near genes chr3L_4_13300001 chr3L_13300001 RAL-176 1125 chr3L 13525161 13525186 chr3L 13532957 13532981 roo 11 7795 4.0 5.5 4.8 1.9 7820 chr3L 13525161 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_11_13525001 chr3L_13525001 RAL-176 1126 chr3L 13629528 13629549 chr3L 13629639 13629660 4 111 3.5 9.0 6.2 0.6 132 chr3L 13629528 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629660 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-176 1127 chr3L 13677531 13677557 chr3L 13677608 13677634 4 77 1.0 1.5 1.2 1.8 103 chr3L 13677531 intron bru-3 - chr3L 13677582 intron bru-3 - chr3L 13677634 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-176 1128 chr3L 13703651 13703664 chr3L 13703728 13703735 4 76 2.5 2.5 2.5 1.1 84 chr3L 13703651 intron bru-3 - chr3L 13703693 intron bru-3 - chr3L 13703735 intron bru-3 - chr3L_4_13700001 chr3L_13700001 RAL-176 1129 chr3L 13804544 13804563 chr3L 13822830 13822849 roo 5 18285 2.0 1.0 1.5 2.0 18305 chr3L 13804544 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822849 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-176 1130 chr3L 13841518 13841545 chr3L 13841602 13841615 11 81 4.5 6.0 5.2 1.8 97 chr3L 13841518 exon CG8757 - chr3L 13841566 intron CG8757 - chr3L 13841615 intron CG8757 - chr3L_11_13840001 chr3L_13840001 RAL-176 1131 chr3L 13842086 13842100 chr3L 13842192 13842205 6 109 3.5 3.5 3.5 1.3 119 chr3L 13842086 exon CG8757 - chr3L 13842146 exon CG8757 - chr3L 13842205 5` UTR CG8757 - chr3L_6_13840001 chr3L_13840001 RAL-176 1132 chr3L 14004441 14004466 chr3L 14004520 14004545 12 79 8.0 4.0 6.0 1.7 104 chr3L 14004441 intron upSET + chr3L 14004493 intron upSET + chr3L 14004545 intron upSET + chr3L_12_14000001 chr3L_14000001 RAL-176 1133 chr3L 14110581 14110618 chr3L 14110663 14110700 11 79 6.5 2.5 4.5 2.0 119 chr3L 14110581 intergenic not near genes chr3L 14110640 intergenic not near genes chr3L 14110700 intergenic not near genes chr3L_11_14110001 chr3L_14110001 RAL-176 1134 chr3L 14199349 14199374 chr3L 14199438 14199465 8 91 4.0 5.5 4.8 1.4 116 chr3L 14199349 intron nuf + chr3L 14199407 intron nuf + chr3L 14199465 intron nuf + chr3L_8_14195001 chr3L_14195001 RAL-176 1135 chr3L 14209302 14209326 chr3L 14209386 14209410 6 84 2.5 0.5 1.5 2.4 108 chr3L 14209302 intron nuf + chr3L 14209356 intron nuf + chr3L 14209410 intron nuf + chr3L_6_14205001 chr3L_14205001 RAL-176 1136 chr3L 14215061 14215087 chr3L 14215141 14215167 9 80 5.0 3.0 4.0 1.8 106 chr3L 14215061 intron nuf + chr3L 14215114 intron nuf + chr3L 14215167 intron nuf + chr3L_9_14215001 chr3L_14215001 RAL-176 1137 chr3L 14245567 14245590 chr3L 14245661 14245684 1360 11 93 6.0 2.0 4.0 2.2 117 chr3L 14245567 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_11_14245001 chr3L_14245001 RAL-176 1138 chr3L 14282599 14282606 chr3L 14282672 14282686 7 78 0.0 9.0 4.5 1.3 87 chr3L 14282599 intron fz + chr3L 14282642 intron fz + chr3L 14282686 intron fz + chr3L_7_14280001 chr3L_14280001 RAL-176 1139 chr3L 14295983 14296014 chr3L 14296469 14296500 roo 10 484 3.5 1.5 2.5 2.9 517 chr3L 14295983 intron fz + chr3L 14296242 intron fz + chr3L 14296500 intron fz + chr3L_10_14295001 chr3L_14295001 RAL-176 1140 chr3L 14312023 14312059 chr3L 14316837 14316873 X-element 7 4814 3.0 4.5 3.8 1.5 4850 chr3L 14312023 exon fz + chr3L 14314448 intron fz + chr3L 14316873 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-176 1141 chr3L 14331459 14331488 chr3L 14331541 14331571 8 82 3.0 2.0 2.5 2.3 112 chr3L 14331459 intron fz + chr3L 14331515 intron fz + chr3L 14331571 intron fz + chr3L_8_14330001 chr3L_14330001 RAL-176 1142 chr3L 14338297 14338319 chr3L 14338393 14338415 4 96 1.0 2.5 1.8 1.4 118 chr3L 14338297 intron fz + chr3L 14338356 intron fz + chr3L 14338415 intron fz + chr3L_4_14335001 chr3L_14335001 RAL-176 1143 chr3L 14441598 14441624 chr3L 14441747 14441772 6 149 0.5 2.5 1.5 2.4 174 chr3L 14441598 intron bbg - chr3L 14441685 intron bbg - chr3L 14441772 intron bbg - chr3L_6_14440001 chr3L_14440001 RAL-176 1144 chr3L 14486019 14486048 chr3L 14486100 14486129 10 81 5.5 0.0 2.8 2.6 110 chr3L 14486019 intron bbg - chr3L 14486074 intron bbg - chr3L 14486129 intron bbg - chr3L_10_14485001 chr3L_14485001 RAL-176 1145 chr3L 14565747 14565775 chr3L 14565838 14565866 6 88 0.5 2.0 1.2 2.7 119 chr3L 14565747 intergenic not near genes chr3L 14565806 intergenic not near genes chr3L 14565866 intergenic not near genes chr3L_6_14565001 chr3L_14565001 RAL-176 1146 chr3L 14645469 14645486 chr3L 14645545 14645563 7 76 4.0 1.0 2.5 2.0 94 chr3L 14645469 intron dlp + chr3L 14645516 intron dlp + chr3L 14645563 intron dlp + chr3L_7_14645001 chr3L_14645001 RAL-176 1147 chr3L 14721182 14721206 chr3L 14723024 14723048 Rt1c 6 1840 7.0 4.5 5.8 0.9 1866 chr3L 14721182 intron ome + chr3L 14722115 intron ome + chr3L 14723048 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-176 1148 chr3L 14724812 14724835 chr3L 14724896 14724919 10 84 0.0 3.5 1.8 3.6 107 chr3L 14724812 intron ome + chr3L 14724866 intron ome + chr3L 14724919 intron ome + chr3L_10_14720001 chr3L_14720001 RAL-176 1149 chr3L 14725601 14725625 chr3L 14728595 14728619 Doc 5 2994 3.0 7.5 5.2 0.8 3018 chr3L 14725601 intron ome + chr3L 14727110 intron ome + chr3L 14728619 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-176 1150 chr3L 14741143 14741169 chr3L 14741221 14741247 10 78 3.5 10.0 6.8 1.3 104 chr3L 14741143 intron ome + chr3L 14741195 intron ome + chr3L 14741247 intron ome + chr3L_10_14740001 chr3L_14740001 RAL-176 1151 chr3L 14840378 14840392 chr3L 14840483 14840497 6 104 1.0 4.5 2.8 1.6 119 chr3L 14840378 intron CG17839 + chr3L 14840438 intron CG17839 + chr3L 14840497 intron CG17839 + chr3L_6_14840001 chr3L_14840001 RAL-176 1152 chr3L 14861805 14861831 chr3L 14861885 14861910 6 80 1.0 3.0 2.0 2.0 105 chr3L 14861805 intron CG17839 + chr3L 14861858 intron CG17839 + chr3L 14861910 intron CG17839 + chr3L_6_14860001 chr3L_14860001 RAL-176 1153 chr3L 14906123 14906148 chr3L 14906208 14906216 5 78 11.0 4.0 7.5 0.6 93 chr3L 14906123 intron DCX-EMAP + chr3L 14906170 intron DCX-EMAP + chr3L 14906216 intron DCX-EMAP + chr3L_5_14905001 chr3L_14905001 RAL-176 1154 chr3L 14912183 14912215 chr3L 14912265 14912294 9 81 1.0 9.0 5.0 1.5 111 chr3L 14912183 intron DCX-EMAP + chr3L 14912238 intron DCX-EMAP + chr3L 14912294 intron DCX-EMAP + chr3L_9_14910001 chr3L_14910001 RAL-176 1155 chr3L 15085053 15085085 chr3L 15086217 15086250 1360 9 1165 2.5 3.5 3.0 2.2 1197 chr3L 15085053 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086250 intron cp309 - chr3L_9_15085001 chr3L_15085001 RAL-176 1156 chr3L 15151220 15151242 chr3L 15151404 15151426 7 184 1.5 1.5 1.5 2.8 206 chr3L 15151220 intron FucTA + chr3L 15151323 intron FucTA + chr3L 15151426 intron FucTA + chr3L_7_15150001 chr3L_15150001 RAL-176 1157 chr3L 15290498 15290509 chr3L 15290569 15290588 8 78 5.0 4.0 4.5 1.5 90 chr3L 15290498 intergenic not near genes chr3L 15290543 intergenic not near genes chr3L 15290588 intergenic not near genes chr3L_8_15290001 chr3L_15290001 RAL-176 1158 chr3L 15384962 15384989 chr3L 15385087 15385111 5 126 4.0 4.0 4.0 1.0 149 chr3L 15384962 intergenic not near genes chr3L 15385036 intergenic not near genes chr3L 15385111 intergenic not near genes chr3L_5_15385001 chr3L_15385001 RAL-176 1159 chr3L 15423759 15423784 chr3L 15426603 15426628 opus 6 2844 4.5 2.5 3.5 1.3 2869 chr3L 15423759 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426628 intergenic not near genes chr3L_6_15425001 chr3L_15425001 RAL-176 1160 chr3L 15444656 15444681 chr3L 15444748 15444774 11 92 5.0 7.5 6.2 1.5 118 chr3L 15444656 intergenic not near genes chr3L 15444715 intergenic not near genes chr3L 15444774 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-176 1161 chr3L 15482603 15482628 chr3L 15482684 15482709 6 81 1.0 1.5 1.2 2.7 106 chr3L 15482603 intergenic not near genes chr3L 15482656 intergenic not near genes chr3L 15482709 intergenic not near genes chr3L_6_15480001 chr3L_15480001 RAL-176 1162 chr3L 15633184 15633214 chr3L 15633264 15633294 8 80 1.0 0.0 0.5 5.3 110 chr3L 15633184 intron comm3 - chr3L 15633239 intron comm3 - chr3L 15633294 intron comm3 - chr3L_8_15630001 chr3L_15630001 RAL-176 1163 chr3L 15737388 15737402 chr3L 15737478 15737491 4 89 1.0 2.0 1.5 1.6 103 chr3L 15737388 intergenic not near genes chr3L 15737440 intergenic not near genes chr3L 15737491 intergenic not near genes chr3L_4_15735001 chr3L_15735001 RAL-176 1164 chr3L 15756882 15756913 chr3L 15756965 15756995 13 80 3.5 0.5 2.0 4.3 113 chr3L 15756882 intergenic not near genes chr3L 15756938 intergenic not near genes chr3L 15756995 intergenic not near genes chr3L_13_15755001 chr3L_15755001 RAL-176 1165 chr3L 15880596 15880617 chr3L 15880676 15880694 6 79 6.5 3.5 5.0 1.0 98 chr3L 15880596 intron pHCl - chr3L 15880645 intron pHCl - chr3L 15880694 intron pHCl - chr3L_6_15880001 chr3L_15880001 RAL-176 1166 chr3L 15883196 15883219 chr3L 15883489 15883512 10 293 0.5 3.5 2.0 3.3 316 chr3L 15883196 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883512 intron pHCl - chr3L_10_15880001 chr3L_15880001 RAL-176 1167 chr3L 15899223 15899259 chr3L 15899790 15899821 jockey 9 555 4.0 5.0 4.5 1.6 598 chr3L 15899223 intergenic pHCl - chr3L 15899522 intergenic pHCl - chr3L 15899821 intergenic sff - chr3L_9_15895001 chr3L_15895001 RAL-176 1168 chr3L 15948745 15948776 chr3L 15948826 15948855 21 78 6.5 4.0 5.2 3.4 110 chr3L 15948745 intron Pka-C3 - chr3L 15948800 intron Pka-C3 - chr3L 15948855 intron Pka-C3 - chr3L_21_15945001 chr3L_15945001 RAL-176 1169 chr3L 15981674 15981687 chr3L 15981760 15981772 7 85 12.0 1.5 6.8 0.9 98 chr3L 15981674 intron,3` UTR brm -,CG17027 + chr3L 15981723 intron,3` UTR brm -,CG17027 + chr3L 15981772 intron,3` UTR brm -,CG17027 + chr3L_7_15980001 chr3L_15980001 RAL-176 1170 chr3L 15991011 15991039 chr3L 15991712 15991740 13 701 32.5 32.5 32.5 0.4 729 chr3L 15991011 3` UTR Hip14 + chr3L 15991376 3` UTR Hip14 + chr3L 15991740 3` UTR Hip14 + chr3L_13_15990001 chr3L_15990001 RAL-176 1171 chr3L 16051203 16051229 chr3L 16051568 16051594 12 363 2.0 2.0 2.0 4.0 391 chr3L 16051203 intergenic th - chr3L 16051398 intergenic th - chr3L 16051594 intergenic Mbs + chr3L_12_16050001 chr3L_16050001 RAL-176 1172 chr3L 16162596 16162624 chr3L 16162680 16162708 11 81 2.0 2.5 2.2 3.4 112 chr3L 16162596 intron CG5151 - chr3L 16162652 intron CG5151 - chr3L 16162708 intron CG5151 - chr3L_11_16160001 chr3L_16160001 RAL-176 1173 chr3L 16184103 16184140 chr3L 16188922 16188947 X-element 13 4818 3.5 3.5 3.5 2.9 4844 chr3L 16184103 intergenic not near genes chr3L 16186525 intergenic not near genes chr3L 16188947 intergenic not near genes chr3L_13_16185001 chr3L_16185001 RAL-176 1174 chr3L 16387982 16387991 chr3L 16388068 16388072 8 84 18.5 8.5 13.5 0.6 90 chr3L 16387982 exon RAF2 + chr3L 16388027 exon RAF2 + chr3L 16388072 exon RAF2 + chr3L_8_16385001 chr3L_16385001 RAL-176 1175 chr3L 16388007 16388136 chr3L 16388090 16388332 14 90 37.5 31.5 34.5 0.4 325 chr3L 16388007 exon RAF2 + chr3L 16388170 exon RAF2 + chr3L 16388332 exon RAF2 + chr3L_14_16385001 chr3L_16385001 RAL-176 1176 chr3L 16440769 16440797 chr3L 16440851 16440879 7 82 1.0 5.0 3.0 1.8 110 chr3L 16440769 intron,intron CG33158 +,dsx-c73A - chr3L 16440824 intron,intron CG33158 +,dsx-c73A - chr3L 16440879 intron,intron CG33158 +,dsx-c73A - chr3L_7_16440001 chr3L_16440001 RAL-176 1177 chr3L 16443852 16443878 chr3L 16446192 16446218 Doc 7 2340 2.5 6.5 4.5 1.3 2366 chr3L 16443852 intron,intron CG33158 +,dsx-c73A - chr3L 16445035 intron,intron CG33158 +,dsx-c73A - chr3L 16446218 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-176 1178 chr3L 16463343 16463374 chr3L 16463428 16463457 7 84 0.5 5.0 2.8 1.8 114 chr3L 16463343 intron CG33158 + chr3L 16463400 intron CG33158 + chr3L 16463457 intron CG33158 + chr3L_7_16460001 chr3L_16460001 RAL-176 1179 chr3L 16493974 16494011 chr3L 16494491 16494526 jockey 21 515 13.5 4.5 9.0 2.1 552 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494526 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_21_16490001 chr3L_16490001 RAL-176 1180 chr3L 16533569 16533587 chr3L 16533680 16533698 8 111 4.5 7.0 5.8 1.2 129 chr3L 16533569 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533698 intron CG43373 - chr3L_8_16530001 chr3L_16530001 RAL-176 1181 chr3L 16540062 16540085 chr3L 16540150 16540169 8 87 1.5 3.5 2.5 2.3 107 chr3L 16540062 intron CG43373 - chr3L 16540116 intron CG43373 - chr3L 16540169 intron CG43373 - chr3L_8_16540001 chr3L_16540001 RAL-176 1182 chr3L 16616510 16616537 chr3L 16621837 16621865 297 12 5327 3.0 3.5 3.2 2.9 5355 chr3L 16616510 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621865 3` UTR Abl - chr3L_12_16615001 chr3L_16615001 RAL-176 1183 chr3L 16632227 16632252 chr3L 16632413 16632438 4 185 19.5 1.0 10.2 0.4 211 chr3L 16632227 intron Abl - chr3L 16632332 intron Abl - chr3L 16632438 intron Abl - chr3L_4_16630001 chr3L_16630001 RAL-176 1184 chr3L 16772493 16772512 chr3L 16772583 16772602 10 90 4.0 1.5 2.8 2.6 109 chr3L 16772493 intron Nrt + chr3L 16772548 intron Nrt + chr3L 16772602 intron Nrt + chr3L_10_16770001 chr3L_16770001 RAL-176 1185 chr3L 16786983 16787002 chr3L 16787056 16787078 8 75 0.0 7.5 3.8 1.7 95 chr3L 16786983 intergenic Int6 - chr3L 16787030 intergenic Int6 - chr3L 16787078 intergenic Int6 -,CG9674 - chr3L_8_16785001 chr3L_16785001 RAL-176 1186 chr3L 16805028 16805038 chr3L 16805143 16805153 4 115 3.5 2.5 3.0 1.0 125 chr3L 16805028 intron,5` UTR CG9674 -,nudC + chr3L 16805090 intron,5` UTR CG9674 -,nudC + chr3L 16805153 intron,5` UTR CG9674 -,nudC + chr3L_4_16805001 chr3L_16805001 RAL-176 1187 chr3L 16817878 16817905 chr3L 16818018 16818045 7 139 9.0 3.5 6.2 1.0 167 chr3L 16817878 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818045 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-176 1188 chr3L 16845024 16845043 chr3L 16845137 16845156 6 112 3.5 4.0 3.8 1.2 132 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_6_16845001 chr3L_16845001 RAL-176 1189 chr3L 16861038 16861053 chr3L 16861139 16861154 14 101 7.5 11.0 9.2 1.4 116 chr3L 16861038 intron,exon Rh4 -,CG13029 + chr3L 16861096 intron,intron Rh4 -,CG13029 + chr3L 16861154 intron,exon Rh4 -,CG13029 + chr3L_14_16860001 chr3L_16860001 RAL-176 1190 chr3L 16884884 16884897 chr3L 16884962 16884975 10 77 2.5 11.0 6.8 1.3 91 chr3L 16884884 intron Lmpt + chr3L 16884930 intron Lmpt + chr3L 16884975 intron Lmpt + chr3L_10_16880001 chr3L_16880001 RAL-176 1191 chr3L 16941404 16941421 chr3L 16941503 16941522 12 100 8.0 0.0 4.0 2.4 118 chr3L 16941404 intron Cpr73D - chr3L 16941463 intron Cpr73D - chr3L 16941522 intron Cpr73D - chr3L_12_16940001 chr3L_16940001 RAL-176 1192 chr3L 16945728 16945747 chr3L 16954881 16954899 roo 11 9152 12.0 1.5 6.8 1.4 9171 chr3L 16945728 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954899 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-176 1193 chr3L 16945748 16945761 chr3L 16954879 16954889 roo 10 9139 5.0 1.5 3.2 2.4 9141 chr3L 16945748 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954889 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-176 1194 chr3L 16972056 16972071 chr3L 16972132 16972147 7 76 6.0 0.5 3.2 1.7 91 chr3L 16972056 intron Exn + chr3L 16972102 intron Exn + chr3L 16972147 intron Exn + chr3L_7_16970001 chr3L_16970001 RAL-176 1195 chr3L 17026791 17026823 chr3L 17026872 17026900 21 80 5.5 7.0 6.2 2.9 109 chr3L 17026791 exon Fit2 + chr3L 17026846 3` UTR Fit2 + chr3L 17026900 3` UTR Fit2 + chr3L_21_17025001 chr3L_17025001 RAL-176 1196 chr3L 17085017 17085037 chr3L 17094166 17094186 roo 7 9148 2.5 4.5 3.5 1.6 9169 chr3L 17085017 intron Rbp6 - chr3L 17089602 intron Rbp6 - chr3L 17094186 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-176 1197 chr3L 17120655 17120682 chr3L 17120730 17120758 9 76 2.5 4.5 3.5 2.0 103 chr3L 17120655 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120758 intron Rbp6 - chr3L_9_17120001 chr3L_17120001 RAL-176 1198 chr3L 17149165 17149185 chr3L 17149246 17149266 11 81 9.5 0.0 4.8 1.9 101 chr3L 17149165 intron Rbp6 - chr3L 17149216 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_11_17145001 chr3L_17145001 RAL-176 1199 chr3L 17202896 17202929 chr3L 17202985 17203018 15 89 10.0 3.0 6.5 2.0 122 chr3L 17202896 intron Rbp6 - chr3L 17202957 intron Rbp6 - chr3L 17203018 intron Rbp6 - chr3L_15_17200001 chr3L_17200001 RAL-176 1200 chr3L 17272245 17272266 chr3L 17272376 17272399 7 133 2.0 5.5 3.8 1.5 154 chr3L 17272245 intergenic not near genes chr3L 17272322 intergenic not near genes chr3L 17272399 intergenic not near genes chr3L_7_17270001 chr3L_17270001 RAL-176 1201 chr3L 17307267 17307291 chr3L 17307374 17307398 8 107 51.5 38.5 45.0 0.2 131 chr3L 17307267 intergenic not near genes chr3L 17307332 intergenic not near genes chr3L 17307398 intergenic not near genes chr3L_8_17305001 chr3L_17305001 RAL-176 1202 chr3L 17331068 17331087 chr3L 17331158 17331177 7 90 4.0 4.0 4.0 1.4 109 chr3L 17331068 intergenic not near genes chr3L 17331122 intergenic not near genes chr3L 17331177 intergenic not near genes chr3L_7_17330001 chr3L_17330001 RAL-176 1203 chr3L 17386801 17386833 chr3L 17386878 17386886 21 74 3.5 12.0 7.8 2.4 85 chr3L 17386801 intron CG13731 - chr3L 17386844 intron CG13731 - chr3L 17386886 intron CG13731 - chr3L_21_17385001 chr3L_17385001 RAL-176 1204 chr3L 17475919 17475943 chr3L 17475993 17476020 9 75 1.0 3.0 2.0 3.0 101 chr3L 17475919 3` UTR CG7580 + chr3L 17475970 3` UTR CG7580 + chr3L 17476020 3` UTR CG7580 + chr3L_9_17475001 chr3L_17475001 RAL-176 1205 chr3L 17510745 17510765 chr3L 17510829 17510849 18 84 8.0 10.0 9.0 1.8 104 chr3L 17510745 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_18_17510001 chr3L_17510001 RAL-176 1206 chr3L 17516978 17517011 chr3L 17524536 17524559 412 22 7556 6.5 5.0 5.8 3.2 7581 chr3L 17516978 intron CG7564 + chr3L 17520768 intron CG7564 + chr3L 17524559 3` UTR CG7564 + chr3L_22_17520001 chr3L_17520001 RAL-176 1207 chr3L 17535813 17535846 chr3L 17535927 17535960 26 113 5.0 10.5 7.8 3.0 147 chr3L 17535813 intron Nedd4 + chr3L 17535886 intron Nedd4 + chr3L 17535960 intron Nedd4 + chr3L_26_17535001 chr3L_17535001 RAL-176 1208 chr3L 17580586 17580611 chr3L 17580762 17580787 21 176 4.5 0.0 2.2 6.6 201 chr3L 17580586 intron Eip74EF - chr3L 17580686 intron Eip74EF - chr3L 17580787 intron Eip74EF - chr3L_21_17580001 chr3L_17580001 RAL-176 1209 chr3L 17589064 17589092 chr3L 17589139 17589170 16 74 10.0 6.5 8.2 1.7 106 chr3L 17589064 intron Eip74EF - chr3L 17589117 intron Eip74EF - chr3L 17589170 intron Eip74EF - chr3L_16_17585001 chr3L_17585001 RAL-176 1210 chr3L 17592804 17592822 chr3L 17592895 17592913 4 91 0.0 2.0 1.0 2.0 109 chr3L 17592804 intron Eip74EF - chr3L 17592858 intron Eip74EF - chr3L 17592913 intron Eip74EF - chr3L_4_17590001 chr3L_17590001 RAL-176 1211 chr3L 17790607 17790634 chr3L 17790868 17790897 4 264 6.0 3.0 4.5 0.7 290 chr3L 17790607 intergenic CG42815 - chr3L 17790752 intergenic CG42815 - chr3L 17790897 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-176 1212 chr3L 17829721 17829749 chr3L 17829799 17829827 5 78 3.0 3.5 3.2 1.2 106 chr3L 17829721 intron Grd + chr3L 17829774 intron Grd + chr3L 17829827 intron Grd + chr3L_5_17825001 chr3L_17825001 RAL-176 1213 chr3L 17896609 17896640 chr3L 17896686 17896717 10 77 1.0 4.0 2.5 2.9 108 chr3L 17896609 intergenic not near genes chr3L 17896663 intergenic not near genes chr3L 17896717 intergenic not near genes chr3L_10_17895001 chr3L_17895001 RAL-176 1214 chr3L 17918376 17918404 chr3L 17921179 17921207 opus 6 2803 4.0 2.5 3.2 1.4 2831 chr3L 17918376 intergenic not near genes chr3L 17919792 intergenic not near genes chr3L 17921207 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-176 1215 chr3L 17968135 17968165 chr3L 17968216 17968246 10 81 6.0 4.5 5.2 1.6 111 chr3L 17968135 intron Eip75B - chr3L 17968190 intron Eip75B - chr3L 17968246 intron Eip75B - chr3L_10_17965001 chr3L_17965001 RAL-176 1216 chr3L 18029957 18029987 chr3L 18030034 18030064 6 76 0.5 0.0 0.2 5.0 107 chr3L 18029957 intron Eip75B - chr3L 18030010 intron Eip75B - chr3L 18030064 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-176 1217 chr3L 18034704 18034709 chr3L 18034771 18034792 4 79 4.5 6.0 5.2 0.6 88 chr3L 18034704 intron Eip75B - chr3L 18034748 intron Eip75B - chr3L 18034792 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-176 1218 chr3L 18092782 18092805 chr3L 18092897 18092920 7 115 2.5 0.0 1.2 3.2 138 chr3L 18092782 intron CG13698 - chr3L 18092851 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-176 1219 chr3L 18118211 18118241 chr3L 18118289 18118319 10 78 0.0 1.5 0.8 5.6 108 chr3L 18118211 3` UTR,intron CG32195 +,CG7341 + chr3L 18118265 3` UTR,intron CG32195 +,CG7341 + chr3L 18118319 3` UTR,intron CG32195 +,CG7341 + chr3L_10_18115001 chr3L_18115001 RAL-176 1220 chr3L 18221101 18221127 chr3L 18221182 18221208 10 81 0.0 0.0 0.0 10.0 107 chr3L 18221101 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221208 intergenic not near genes chr3L_10_18220001 chr3L_18220001 RAL-176 1221 chr3L 18223163 18223189 chr3L 18223246 18223262 7 81 2.0 1.5 1.8 2.5 99 chr3L 18223163 intergenic not near genes chr3L 18223212 intergenic not near genes chr3L 18223262 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-176 1222 chr3L 18248952 18248988 chr3L 18249050 18249086 16 98 1.5 3.0 2.2 5.0 134 chr3L 18248952 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249086 intergenic not near genes chr3L_16_18245001 chr3L_18245001 RAL-176 1223 chr3L 18258861 18258886 chr3L 18258987 18259010 5 125 1.0 3.5 2.2 1.6 149 chr3L 18258861 intergenic not near genes chr3L 18258936 intergenic not near genes chr3L 18259010 intergenic not near genes chr3L_5_18255001 chr3L_18255001 RAL-176 1224 chr3L 18267859 18267989 chr3L 18267936 18268066 6 77 0.5 1.5 1.0 3.0 207 chr3L 18267859 intergenic not near genes chr3L 18267962 intergenic not near genes chr3L 18268066 intergenic not near genes chr3L_6_18265001 chr3L_18265001 RAL-176 1225 chr3L 18359602 18359625 chr3L 18359693 18359717 6 92 2.5 1.5 2.0 2.0 115 chr3L 18359602 intergenic not near genes chr3L 18359660 intergenic not near genes chr3L 18359717 intergenic not near genes chr3L_6_18355001 chr3L_18355001 RAL-176 1226 chr3L 9013689 9013695 chr3L 18417066 18417066 11 9403374 41.5 33.0 37.2 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_11_13715001 chr3L_13715001 RAL-176 1227 chr3L 18436059 18436086 chr3L 18436157 18436183 4 98 4.0 1.0 2.5 1.1 124 chr3L 18436059 intergenic not near genes chr3L 18436121 intergenic not near genes chr3L 18436183 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-176 1228 chr3L 18456275 18456293 chr3L 18456363 18456381 5 88 4.5 1.5 3.0 1.2 106 chr3L 18456275 intergenic CR44670 - chr3L 18456328 intergenic CR44670 - chr3L 18456381 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-176 1229 chr3L 18464486 18464515 chr3L 18464572 18464601 8 86 3.0 2.0 2.5 2.3 115 chr3L 18464486 intergenic not near genes chr3L 18464544 intergenic not near genes chr3L 18464601 intergenic not near genes chr3L_8_18460001 chr3L_18460001 RAL-176 1230 chr3L 18476250 18476283 chr3L 18476332 18476365 20 82 3.5 2.5 3.0 5.0 115 chr3L 18476250 intergenic not near genes chr3L 18476308 intergenic not near genes chr3L 18476365 intergenic not near genes chr3L_20_18475001 chr3L_18475001 RAL-176 1231 chr3L 18528629 18528657 chr3L 18537788 18537818 roo 5 9161 1.5 2.0 1.8 1.8 9189 chr3L 18528629 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537818 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-176 1232 chr3L 18546703 18546737 chr3L 18546797 18546817 12 92 2.0 3.0 2.5 3.4 114 chr3L 18546703 intergenic not near genes chr3L 18546760 intergenic not near genes chr3L 18546817 intergenic not near genes chr3L_12_18545001 chr3L_18545001 RAL-176 1233 chr3L 18590270 18590290 chr3L 18590352 18590372 7 82 3.0 2.0 2.5 2.0 102 chr3L 18590270 intergenic CG7271 + chr3L 18590321 intergenic CG7271 + chr3L 18590372 intergenic CG7271 + chr3L_7_18590001 chr3L_18590001 RAL-176 1234 chr3L 18656192 18656219 chr3L 18656268 18656304 16 82 5.5 6.5 6.0 2.3 112 chr3L 18656192 intron MYPT-75D + chr3L 18656248 intron MYPT-75D + chr3L 18656304 intron MYPT-75D + chr3L_16_18655001 chr3L_18655001 RAL-176 1235 chr3L 18665216 18665222 chr3L 18665301 18665305 4 84 9.5 0.0 4.8 0.7 89 chr3L 18665216 intron MYPT-75D + chr3L 18665260 intron MYPT-75D + chr3L 18665305 intron MYPT-75D + chr3L_4_18665001 chr3L_18665001 RAL-176 1236 chr3L 18677887 18677920 chr3L 18677982 18678014 14 94 4.5 4.0 4.2 2.7 127 chr3L 18677887 intergenic GNBP1 + chr3L 18677950 intergenic GNBP1 + chr3L 18678014 intergenic GNBP1 + chr3L_14_18675001 chr3L_18675001 RAL-176 1237 chr3L 18682636 18682670 chr3L 18682836 18682871 17 203 45.5 29.0 37.2 0.4 235 chr3L 18682636 exon CG32202 + chr3L 18682754 exon CG32202 + chr3L 18682871 intergenic CG32202 +,Chmp1 - chr3L_17_18680001 chr3L_18680001 RAL-176 1238 chr3L 18721776 18721804 chr3L 18721862 18721895 14 91 4.0 0.0 2.0 4.7 119 chr3L 18721776 intergenic CG12477 - chr3L 18721836 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_14_18720001 chr3L_18720001 RAL-176 1239 chr3L 18753547 18753562 chr3L 18753629 18753644 6 82 2.0 0.5 1.2 2.7 97 chr3L 18753547 intron ftz-f1 - chr3L 18753596 intron ftz-f1 - chr3L 18753644 intron ftz-f1 - chr3L_6_18750001 chr3L_18750001 RAL-176 1240 chr3L 18772407 18772441 chr3L 18781088 18781122 roo 21 8681 9.5 9.0 9.2 2.1 8715 chr3L 18772407 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_21_18775001 chr3L_18775001 RAL-176 1241 chr3L 18887300 18887329 chr3L 18887406 18887435 6 106 1.5 1.0 1.2 2.7 135 chr3L 18887300 intron CG3961 - chr3L 18887368 intron CG3961 - chr3L 18887435 intron CG3961 - chr3L_6_18885001 chr3L_18885001 RAL-176 1242 chr3L 18888273 18888287 chr3L 18888358 18888372 4 85 1.5 1.5 1.5 1.6 99 chr3L 18888273 intron CG3961 - chr3L 18888322 intron CG3961 - chr3L 18888372 intron CG3961 - chr3L_4_18885001 chr3L_18885001 RAL-176 1243 chr3L 18933630 18933661 chr3L 18933724 18933754 4 94 0.5 2.0 1.2 1.8 124 chr3L 18933630 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933754 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-176 1244 chr3L 18948877 18948909 chr3L 18949101 18949135 5 225 0.5 1.5 1.0 2.5 258 chr3L 18948877 intergenic not near genes chr3L 18949006 intergenic not near genes chr3L 18949135 intergenic not near genes chr3L_5_18945001 chr3L_18945001 RAL-176 1245 chr3L 19008837 19008872 chr3L 19009174 19009210 jockey 16 337 2.5 11.0 6.8 2.1 373 chr3L 19008837 intron nkd - chr3L 19009024 intron nkd - chr3L 19009210 intron nkd - chr3L_16_19005001 chr3L_19005001 RAL-176 1246 chr3L 19029454 19029479 chr3L 19029551 19029580 16 100 3.5 3.0 3.2 3.8 126 chr3L 19029454 intron nkd - chr3L 19029517 intron nkd - chr3L 19029580 intron nkd - chr3L_16_19025001 chr3L_19025001 RAL-176 1247 chr3L 19082035 19082070 chr3L 19082137 19082172 20 102 0.5 6.5 3.5 4.4 137 chr3L 19082035 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082172 intron Mkp3 - chr3L_20_19080001 chr3L_19080001 RAL-176 1248 chr3L 19115644 19115669 chr3L 19115819 19115849 BS 14 179 6.5 2.5 4.5 2.5 205 chr3L 19115644 intron CG14082 - chr3L 19115746 intron CG14082 - chr3L 19115849 intron CG14082 - chr3L_14_19115001 chr3L_19115001 RAL-176 1249 chr3L 19117040 19117074 chr3L 19124487 19124521 mdg1 16 7445 9.5 7.0 8.2 1.7 7481 chr3L 19117040 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124521 intron CG14082 - chr3L_16_19120001 chr3L_19120001 RAL-176 1250 chr3L 19182395 19182409 chr3L 19182476 19182490 9 81 1.5 3.0 2.2 2.8 95 chr3L 19182395 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182490 intron fz2 - chr3L_9_19180001 chr3L_19180001 RAL-176 1251 chr3L 19208058 19208087 chr3L 19209432 19209460 Doc 14 1373 7.0 3.0 5.0 2.3 1402 chr3L 19208058 intron fz2 - chr3L 19208759 intron fz2 - chr3L 19209460 intron fz2 - chr3L_14_19205001 chr3L_19205001 RAL-176 1252 chr3L 19216070 19216089 chr3L 19216148 19216167 6 78 5.5 4.0 4.8 1.0 97 chr3L 19216070 intron fz2 - chr3L 19216118 intron fz2 - chr3L 19216167 intron fz2 - chr3L_6_19215001 chr3L_19215001 RAL-176 1253 chr3L 19426746 19426780 chr3L 19426824 19426857 10 73 7.5 6.5 7.0 1.2 111 chr3L 19426746 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426857 intergenic not near genes chr3L_10_19425001 chr3L_19425001 RAL-176 1254 chr3L 19439178 19439205 chr3L 19439257 19439284 6 79 3.0 0.5 1.8 2.1 106 chr3L 19439178 intergenic not near genes chr3L 19439231 intergenic not near genes chr3L 19439284 intergenic not near genes chr3L_6_19435001 chr3L_19435001 RAL-176 1255 chr3L 19479353 19479374 chr3L 19479423 19479449 9 75 4.5 5.0 4.8 1.6 96 chr3L 19479353 intergenic not near genes chr3L 19479401 intergenic not near genes chr3L 19479449 intergenic not near genes chr3L_9_19475001 chr3L_19475001 RAL-176 1256 chr3L 19480661 19480683 chr3L 19480763 19480785 5 102 5.5 3.5 4.5 0.9 124 chr3L 19480661 intergenic not near genes chr3L 19480723 intergenic not near genes chr3L 19480785 intergenic not near genes chr3L_5_19480001 chr3L_19480001 RAL-176 1257 chr3L 19493902 19493928 chr3L 19494260 19494286 10 358 7.0 3.0 5.0 1.7 384 chr3L 19493902 intron CG9449 - chr3L 19494094 intron CG9449 - chr3L 19494286 intron CG9449 - chr3L_10_19490001 chr3L_19490001 RAL-176 1258 chr3L 19703126 19703158 chr3L 19703573 19703605 27 446 9.5 3.0 6.2 3.8 479 chr3L 19703126 intron serp - chr3L 19703366 intron serp - chr3L 19703605 intron serp - chr3L_27_19700001 chr3L_19700001 RAL-176 1259 chr3L 19846606 19846634 chr3L 19846703 19846732 24 98 7.0 5.0 6.0 3.4 126 chr3L 19846606 intron Papss + chr3L 19846669 intron Papss + chr3L 19846732 intron Papss + chr3L_24_19845001 chr3L_19845001 RAL-176 1260 chr3L 19848509 19848535 chr3L 19857697 19857725 roo 10 9190 4.0 7.5 5.8 1.5 9216 chr3L 19848509 intron Papss + chr3L 19853117 intron Papss + chr3L 19857725 intron Papss + chr3L_10_19850001 chr3L_19850001 RAL-176 1261 chr3L 19861823 19861853 chr3L 19863610 19863639 S-element 11 1787 5.0 3.5 4.2 2.1 1816 chr3L 19861823 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_11_19860001 chr3L_19860001 RAL-176 1262 chr3L 19867180 19867198 chr3L 19867257 19867275 8 78 3.5 0.0 1.8 2.9 95 chr3L 19867180 intergenic Rab8 - chr3L 19867228 intergenic Rab8 - chr3L 19867275 intergenic Rab8 - chr3L_8_19865001 chr3L_19865001 RAL-176 1263 chr3L 19905094 19905110 chr3L 19905189 19905205 5 95 8.0 0.0 4.0 1.0 111 chr3L 19905094 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905150 intron,intron Mi-2 -,Su(Tpl) - chr3L 19905205 intron,intron Mi-2 -,Su(Tpl) - chr3L_5_19905001 chr3L_19905001 RAL-176 1264 chr3L 19981204 19981230 chr3L 19981284 19981310 5 80 1.5 1.5 1.5 2.0 106 chr3L 19981204 intergenic CG17732 + chr3L 19981257 intergenic CG17732 + chr3L 19981310 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-176 1265 chr3L 20039006 20039033 chr3L 20039107 20039113 12 99 3.5 4.0 3.8 2.5 107 chr3L 20039006 intergenic not near genes chr3L 20039060 intergenic not near genes chr3L 20039113 intergenic not near genes chr3L_12_20035001 chr3L_20035001 RAL-176 1266 chr3L 20257336 20257363 chr3L 20258456 20258483 pogo 26 1120 3.5 7.0 5.2 4.2 1147 chr3L 20257336 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258483 intron rdgC + chr3L_26_20255001 chr3L_20255001 RAL-176 1267 chr3L 20315653 20315679 chr3L 20315733 20315759 6 80 3.0 5.5 4.2 1.2 106 chr3L 20315653 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315706 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315759 3` UTR,intron alphaSnap +,CR43875 - chr3L_6_20315001 chr3L_20315001 RAL-176 1268 chr3L 20317111 20317125 chr3L 20317187 20317193 7 72 11.0 11.0 11.0 0.6 82 chr3L 20317111 3` UTR CR43875 - chr3L 20317152 3` UTR CR43875 - chr3L 20317193 3` UTR,5` UTR CR43875 -,Spn77Ba + chr3L_7_20315001 chr3L_20315001 RAL-176 1269 chr3L 20386939 20386971 chr3L 20387041 20387073 10 102 2.5 3.5 3.0 2.5 134 chr3L 20386939 intron fbl + chr3L 20387006 intron fbl + chr3L 20387073 intron fbl + chr3L_10_20385001 chr3L_20385001 RAL-176 1270 chr3L 20414484 20414519 chr3L 20415723 20415758 5 1239 13.0 8.5 10.8 0.4 1274 chr3L 20414484 intron zye + chr3L 20415121 intron zye + chr3L 20415758 intron zye + chr3L_5_20415001 chr3L_20415001 RAL-176 1271 chr3L 20476755 20476785 chr3L 20484354 20484384 springer 5 7598 3.0 2.0 2.5 1.4 7629 chr3L 20476755 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-176 1272 chr3L 20548366 20548388 chr3L 20548455 20548477 6 89 1.0 4.5 2.8 1.6 111 chr3L 20548366 intergenic not near genes chr3L 20548422 intergenic not near genes chr3L 20548477 intergenic not near genes chr3L_6_20545001 chr3L_20545001 RAL-176 1273 chr3L 20616155 20616176 chr3L 20616344 20616378 7 199 0.0 3.0 1.5 2.8 223 chr3L 20616155 intron knrl - chr3L 20616266 intron knrl - chr3L 20616378 intron knrl - chr3L_7_20615001 chr3L_20615001 RAL-176 1274 chr3L 20721432 20721466 chr3L 20721551 20721585 6 118 2.5 2.0 2.2 1.9 153 chr3L 20721432 intergenic not near genes chr3L 20721508 intergenic not near genes chr3L 20721585 intergenic not near genes chr3L_6_20720001 chr3L_20720001 RAL-176 1275 chr3L 20821297 20821309 chr3L 20824765 20824777 NOF 4 3468 2.5 5.5 4.0 0.8 3480 chr3L 20821297 intron Pka-R1 + chr3L 20823037 intron Pka-R1 + chr3L 20824777 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-176 1276 chr3L 20826375 20826390 chr3L 20826552 20826581 10 184 5.5 6.5 6.0 1.4 206 chr3L 20826375 intron Pka-R1 + chr3L 20826478 intron Pka-R1 + chr3L 20826581 intron Pka-R1 + chr3L_10_20825001 chr3L_20825001 RAL-176 1277 chr3L 20849277 20849302 chr3L 20849356 20849381 9 79 4.5 6.5 5.5 1.4 104 chr3L 20849277 intron CG32432 - chr3L 20849329 intron CG32432 - chr3L 20849381 intron CG32432 - chr3L_9_20845001 chr3L_20845001 RAL-176 1278 chr3L 20913752 20913776 chr3L 20913831 20913858 9 80 2.5 7.5 5.0 1.5 106 chr3L 20913752 intergenic CR43930 - chr3L 20913805 intergenic CR43930 - chr3L 20913858 intergenic CR43930 - chr3L_9_20910001 chr3L_20910001 RAL-176 1279 chr3L 21010371 21010394 chr3L 21010478 21010498 7 106 2.0 1.0 1.5 2.8 127 chr3L 21010371 intron skd - chr3L 21010434 intron skd - chr3L 21010498 intron skd - chr3L_7_21010001 chr3L_21010001 RAL-176 1280 chr3L 21014922 21014940 chr3L 21023398 21023413 Tirant 5 8474 5.0 7.0 6.0 0.7 8491 chr3L 21014922 intron skd - chr3L 21019168 intron skd - chr3L 21023413 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-176 1281 chr3L 21082209 21082241 chr3L 21082287 21082319 14 77 1.0 7.0 4.0 2.8 110 chr3L 21082209 intron ko - chr3L 21082264 intron ko - chr3L 21082319 intron ko - chr3L_14_21080001 chr3L_21080001 RAL-176 1282 chr3L 21151862 21151896 chr3L 21156946 21156980 flea 16 5083 2.5 0.5 1.5 6.4 5118 chr3L 21151862 intron Ac78C - chr3L 21154421 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_16_21150001 chr3L_21150001 RAL-176 1283 chr3L 21243747 21243766 chr3L 21251309 21251327 412 14 7561 2.5 10.0 6.2 1.9 7580 chr3L 21243747 intron Eip78C + chr3L 21247537 intron Eip78C + chr3L 21251327 intron Eip78C + chr3L_14_21245001 chr3L_21245001 RAL-176 1284 chr3L 21301730 21301761 chr3L 21301816 21301847 13 86 10.0 3.0 6.5 1.7 117 chr3L 21301730 5` UTR CR45432 + chr3L 21301788 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301847 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_13_21300001 chr3L_21300001 RAL-176 1285 chr3L 21306160 21306180 chr3L 21315319 21315338 roo 4 9158 1.5 1.5 1.5 1.6 9178 chr3L 21306160 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310749 intron Pc - chr3L 21315338 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-176 1286 chr3L 21319533 21319547 chr3L 21319621 21319637 4 90 12.5 13.5 13.0 0.3 104 chr3L 21319533 5` UTR Rab26 + chr3L 21319585 5` UTR Rab26 + chr3L 21319637 5` UTR Rab26 + chr3L_4_21315001 chr3L_21315001 RAL-176 1287 chr3L 21319549 21319557 chr3L 21319616 21319647 4 82 9.0 13.5 11.2 0.3 98 chr3L 21319549 5` UTR Rab26 + chr3L 21319598 5` UTR Rab26 + chr3L 21319647 5` UTR Rab26 + chr3L_4_21315001 chr3L_21315001 RAL-176 1288 chr3L 21395141 21395177 chr3L 21395229 21395265 14 87 6.0 2.0 4.0 2.8 124 chr3L 21395141 intron rgn + chr3L 21395203 intron rgn + chr3L 21395265 intron rgn + chr3L_14_21395001 chr3L_21395001 RAL-176 1289 chr3L 21407010 21407020 chr3L 21407078 21407099 6 77 6.5 2.0 4.2 1.2 89 chr3L 21407010 intron rgn + chr3L 21407054 intron rgn + chr3L 21407099 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-176 1290 chr3L 21427855 21427881 chr3L 21427948 21427974 17 92 2.5 5.0 3.8 3.5 119 chr3L 21427855 intron,5` UTR barc -,CG33288 + chr3L 21427914 intron,5` UTR barc -,CG33288 + chr3L 21427974 intron,5` UTR barc -,CG33288 + chr3L_17_21425001 chr3L_21425001 RAL-176 1291 chr3L 21498841 21498853 chr3L 21500468 21500489 1360 4 1633 11.0 4.0 7.5 0.5 1648 chr3L 21498841 intron Glg1 - chr3L 21499665 intron Glg1 - chr3L 21500489 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-176 1292 chr3L 21530421 21530449 chr3L 21530506 21530533 9 83 1.0 3.5 2.2 2.8 112 chr3L 21530421 3` UTR Mkrn1 - chr3L 21530477 3` UTR Mkrn1 - chr3L 21530533 3` UTR Mkrn1 - chr3L_9_21530001 chr3L_21530001 RAL-176 1293 chr3L 21749327 21749347 chr3L 21754485 21754506 Doc 10 5160 14.5 12.5 13.5 0.7 5179 chr3L 21749327 intron Syn1 - chr3L 21751916 intron Syn1 - chr3L 21754506 intron Syn1 - chr3L_10_21750001 chr3L_21750001 RAL-176 1294 chr3L 21769600 21769634 chr3L 21769678 21769696 24 74 11.5 7.0 9.2 2.4 96 chr3L 21769600 intron,intron Syn1 -,CG42689 + chr3L 21769648 intron,intron Syn1 -,CG42689 + chr3L 21769696 intron,intron Syn1 -,CG42689 + chr3L_24_21765001 chr3L_21765001 RAL-176 1295 chr3L 21771899 21771919 chr3L 21772010 21772030 4 110 2.5 3.0 2.8 1.1 131 chr3L 21771899 intron CG42689 + chr3L 21771964 intron CG42689 + chr3L 21772030 intron CG42689 + chr3L_4_21770001 chr3L_21770001 RAL-176 1296 chr3L 21776684 21776700 chr3L 21776771 21776787 7 87 3.0 7.5 5.2 1.1 103 chr3L 21776684 intron,intron CG42689 +,CG42552 + chr3L 21776736 intron,intron CG42689 +,CG42552 + chr3L 21776787 intron,intron CG42689 +,CG42552 + chr3L_7_21775001 chr3L_21775001 RAL-176 1297 chr3L 21828941 21828973 chr3L 21829028 21829053 10 78 5.0 5.5 5.2 1.6 112 chr3L 21828941 intergenic CR43309 -,CG32448 - chr3L 21828997 intergenic CR43309 - chr3L 21829053 intergenic CR43309 - chr3L_10_21825001 chr3L_21825001 RAL-176 1298 chr3L 21849501 21849532 chr3L 21849583 21849614 5 82 4.0 1.0 2.5 1.4 113 chr3L 21849501 intron mub + chr3L 21849558 intron mub + chr3L 21849614 intron mub + chr3L_5_21845001 chr3L_21845001 RAL-176 1299 chr3L 21886252 21886276 chr3L 21886327 21886355 8 78 3.0 4.5 3.8 1.7 103 chr3L 21886252 intron,intron mub +,CR43878 - chr3L 21886304 intron,intron mub +,CR43878 - chr3L 21886355 intron,intron mub +,CR43878 - chr3L_8_21885001 chr3L_21885001 RAL-176 1300 chr3L 21905334 21905364 chr3L 21905414 21905444 18 78 4.5 3.5 4.0 3.6 110 chr3L 21905334 intron mub + chr3L 21905389 intron mub + chr3L 21905444 intron mub + chr3L_18_21905001 chr3L_21905001 RAL-176 1301 chr3L 21975693 21975712 chr3L 21975925 21975946 7 233 1.5 7.0 4.2 1.3 253 chr3L 21975693 intron CG7470 + chr3L 21975820 intron CG7470 + chr3L 21975946 intron CG7470 + chr3L_7_21975001 chr3L_21975001 RAL-176 1302 chr3L 22033696 22033715 chr3L 22033769 22033793 9 77 1.5 3.0 2.2 2.8 97 chr3L 22033696 intergenic not near genes chr3L 22033744 intergenic not near genes chr3L 22033793 intergenic not near genes chr3L_9_22030001 chr3L_22030001 RAL-176 1303 chr3L 22099673 22099709 chr3L 22105859 22105895 3S18 4 6186 6.5 1.5 4.0 0.8 6222 chr3L 22099673 intergenic not near genes chr3L 22102784 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-176 1304 chr3L 22121813 22121834 chr3L 22126618 22126644 7 4806 21.5 36.5 29.0 0.2 4831 chr3L 22121813 intergenic CR45236 + chr3L 22124228 intergenic not near genes chr3L 22126644 intergenic not near genes chr3L_7_22120001 chr3L_22120001 RAL-176 1305 chr3L 22169459 22169488 chr3L 22169552 22169581 18 92 4.5 4.5 4.5 3.3 122 chr3L 22169459 intron olf413 + chr3L 22169520 intron olf413 + chr3L 22169581 intron olf413 + chr3L_18_22165001 chr3L_22165001 RAL-176 1306 chr3L 22208185 22208216 chr3L 22208426 22208458 7 241 3.5 1.0 2.2 2.2 273 chr3L 22208185 intron olf413 + chr3L 22208322 intron olf413 + chr3L 22208458 intron olf413 + chr3L_7_22205001 chr3L_22205001 RAL-176 1307 chr3L 22361949 22361956 chr3L 22362026 22362027 5 75 9.0 4.5 6.8 0.6 78 chr3L 22361949 intron Ten-m - chr3L 22361988 intron Ten-m - chr3L 22362027 intron Ten-m - chr3L_5_22360001 chr3L_22360001 RAL-176 1308 chr3L 22395602 22395631 chr3L 22395683 22395713 13 82 4.5 4.5 4.5 2.4 111 chr3L 22395602 intron Ten-m - chr3L 22395658 intron Ten-m - chr3L 22395713 intron Ten-m - chr3L_13_22395001 chr3L_22395001 RAL-176 1309 chr3L 22411379 22411399 chr3L 22411447 22411467 6 70 9.5 4.0 6.8 0.8 88 chr3L 22411379 intergenic not near genes chr3L 22411423 intergenic not near genes chr3L 22411467 intergenic not near genes chr3L_6_22410001 chr3L_22410001 RAL-176 1310 chr3L 22507122 22507155 chr3L 22507209 22507242 8 84 4.5 5.0 4.8 1.4 120 chr3L 22507122 intergenic not near genes chr3L 22507182 intergenic not near genes chr3L 22507242 intergenic not near genes chr3L_8_22505001 chr3L_22505001 RAL-176 1311 chr3L 22555769 22555794 chr3L 22563239 22563243 blood 9 7464 2.0 2.5 2.2 2.8 7474 chr3L 22555769 intergenic not near genes chr3L 22559506 intergenic not near genes chr3L 22563243 intergenic not near genes chr3L_9_22555001 chr3L_22555001 RAL-176 1312 chr3L 22570424 22570457 chr3L 22570568 22570601 16 144 3.5 6.0 4.8 2.8 177 chr3L 22570424 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570601 intergenic not near genes chr3L_16_22570001 chr3L_22570001 RAL-176 1313 chr3L 22577623 22577648 chr3L 22582405 22582436 Doc 21 4787 10.0 7.0 8.5 2.2 4813 chr3L 22577623 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_21_22580001 chr3L_22580001 RAL-176 1314 chr3L 22617194 22617222 chr3L 22624643 22624672 blood 10 7451 2.5 2.5 2.5 2.9 7478 chr3L 22617194 intron CG14459 - chr3L 22620933 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_10_22620001 chr3L_22620001 RAL-176 1315 chr3L 22630739 22630774 chr3L 22630817 22630853 17 78 2.5 4.5 3.5 3.8 114 chr3L 22630739 intron CG14459 - chr3L 22630796 intron CG14459 - chr3L 22630853 intron CG14459 - chr3L_17_22630001 chr3L_22630001 RAL-176 1316 chr3L 22652323 22652353 chr3L 22652461 22652491 15 137 3.5 5.0 4.2 2.9 168 chr3L 22652323 exon CG33772 - chr3L 22652407 intron CG33772 - chr3L 22652491 exon CG33772 - chr3L_15_22650001 chr3L_22650001 RAL-176 1317 chr3L 22761396 22761420 chr3L 22766830 22766854 Ivk 6 5434 2.5 1.5 2.0 2.0 5458 chr3L 22761396 intron SPoCk + chr3L 22764125 intron SPoCk + chr3L 22766854 intron SPoCk + chr3L_6_22760001 chr3L_22760001 RAL-176 1318 chr3L 22853472 22853475 chr3L 22853552 22853562 4 85 12.0 13.0 12.5 0.3 90 chr3L 22853472 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853517 5` UTR CR43426 + chr3L 22853562 5` UTR CR43426 + chr3L_4_22850001 chr3L_22850001 RAL-176 1319 chr3L 22853476 22853723 chr3L 22853548 22853808 48 85 5.0 11.0 8.0 5.3 332 chr3L 22853476 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853642 5` UTR CR43426 + chr3L 22853808 5` UTR CR43426 + chr3L_48_22850001 chr3L_22850001 RAL-176 1320 chr3L 22865980 22866008 chr3L 22867113 22867141 Doc 6 1132 1.5 3.5 2.5 1.7 1161 chr3L 22865980 intron CG33170 + chr3L 22866560 intron CG33170 + chr3L 22867141 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-176 1321 chr3L 22897200 22897211 chr3L 22897282 22897294 10 82 16.5 9.0 12.8 0.7 94 chr3L 22897200 intergenic not near genes chr3L 22897247 intergenic not near genes chr3L 22897294 intergenic not near genes chr3L_10_22895001 chr3L_22895001 RAL-176 1322 chr3L 22897213 22897226 chr3L 22897277 22897307 17 79 7.0 6.5 6.8 2.2 94 chr3L 22897213 intergenic not near genes chr3L 22897260 intergenic not near genes chr3L 22897307 intergenic not near genes chr3L_17_22895001 chr3L_22895001 RAL-176 1323 chr3L 19220633 19220636 chr3L 22908066 22908066 18 3687431 27.0 37.0 32.0 0.5 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_18_21060001 chr3L_21060001 RAL-176 1324 chr3L 19220633 19220636 chr3L 22908067 22908067 6 3687433 27.0 37.5 32.2 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-176 1325 chr3L 22974360 22974395 chr3L 22974439 22974474 11 77 7.0 3.0 5.0 1.8 114 chr3L 22974360 intergenic not near genes chr3L 22974417 intergenic not near genes chr3L 22974474 intergenic not near genes chr3L_11_22970001 chr3L_22970001 RAL-176 1326 chr3L 22975250 22975278 chr3L 22975341 22975369 8 91 1.0 1.5 1.2 3.6 119 chr3L 22975250 intergenic not near genes chr3L 22975310 intergenic not near genes chr3L 22975369 intergenic not near genes chr3L_8_22975001 chr3L_22975001 RAL-176 1327 chr3L 22989871 22989890 chr3L 22996835 22996864 297 5 6972 4.0 2.0 3.0 1.2 6993 chr3L 22989871 intergenic not near genes chr3L 22993368 intergenic not near genes chr3L 22996864 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-176 1328 chr3L 23004903 23004938 chr3L 23005228 23005264 14 323 0.5 3.5 2.0 4.7 361 chr3L 23004903 intron nrm + chr3L 23005084 intron nrm + chr3L 23005264 intron nrm + chr3L_14_23005001 chr3L_23005001 RAL-176 1329 chr3L 23182259 23182286 chr3L 23182373 23182380 10 111 4.5 5.5 5.0 1.7 121 chr3L 23182259 intron CG34031 + chr3L 23182320 intron CG34031 + chr3L 23182380 intron CG34031 + chr3L_10_23180001 chr3L_23180001 RAL-176 1330 chr3L 23251946 23251975 chr3L 23252063 23252092 12 114 5.0 6.5 5.8 1.8 146 chr3L 23251946 intron nAChRalpha4 + chr3L 23252019 intron nAChRalpha4 + chr3L 23252092 intron nAChRalpha4 + chr3L_12_23250001 chr3L_23250001 RAL-176 1331 chr3L 23288943 23288963 chr3L 23289069 23289091 7 126 3.5 3.0 3.2 1.7 148 chr3L 23288943 intergenic not near genes chr3L 23289017 intergenic not near genes chr3L 23289091 intergenic not near genes chr3L_7_23285001 chr3L_23285001 RAL-176 1332 chr3L 23449710 23449727 chr3L 23449786 23449804 16 76 1.5 6.0 3.8 3.3 94 chr3L 23449710 intergenic not near genes chr3L 23449757 intergenic not near genes chr3L 23449804 intergenic not near genes chr3L_16_23445001 chr3L_23445001 RAL-176 1333 chr3L 21145699 21145702 chr3L 23747149 23747152 4 2601450 17.5 13.0 15.2 0.2 2601453 chr3L 21145699 intron Ac78C - chr3L 22446426 intergenic not near genes chr3L 23747152 intron CG17698 + chr3L_4_22445001 chr3L_22445001 RAL-176 1334 chr3L 23854297 23854315 chr3L 23854394 23854413 9 98 3.5 5.5 4.5 1.6 116 chr3L 23854297 intron CG40470 - chr3L 23854355 intron CG40470 - chr3L 23854413 intron CG40470 - chr3L_9_23850001 chr3L_23850001 RAL-176 1335 chr3L 24012409 24012439 chr3L 24020750 24020780 roo 4 8341 0.5 1.5 1.0 2.0 8371 chr3L 24012409 intergenic not near genes chr3L 24016594 intergenic not near genes chr3L 24020780 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-176 1336 chr3L 24021278 24021310 chr3L 24022435 24022466 1360 4 1154 1.0 2.5 1.8 1.4 1188 chr3L 24021278 intergenic not near genes chr3L 24021872 intergenic not near genes chr3L 24022466 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-176 1337 chr3L 24036792 24036811 chr3L 24036882 24036902 7 90 4.0 5.0 4.5 1.3 110 chr3L 24036792 intergenic not near genes chr3L 24036847 intergenic not near genes chr3L 24036902 intergenic not near genes chr3L_7_24035001 chr3L_24035001 RAL-176 1338 chr3L 24084485 24084518 chr3L 24084572 24084590 7 78 2.0 1.5 1.8 2.5 105 chr3L 24084485 intron Snap25 + chr3L 24084538 intron Snap25 + chr3L 24084590 intron Snap25 + chr3L_7_24080001 chr3L_24080001 RAL-176 1339 chr3L 24282163 24282183 chr3L 24282247 24282266 7 84 1.5 4.5 3.0 1.8 103 chr3L 24282163 intron Snap25 + chr3L 24282214 intron Snap25 + chr3L 24282266 intron Snap25 + chr3L_7_24280001 chr3L_24280001 RAL-176 1340 chr3L 24363240 24363248 chr3L 24363318 24363326 5 78 8.0 3.5 5.8 0.7 86 chr3L 24363240 intron nvd + chr3L 24363283 intron nvd + chr3L 24363326 intron nvd + chr3L_5_24360001 chr3L_24360001 RAL-176 1341 chr3L 25106582 25106608 chr3L 25106669 25106695 12 87 4.5 3.0 3.8 2.5 113 chr3L 25106582 intergenic not near genes chr3L 25106638 intergenic not near genes chr3L 25106695 intergenic not near genes chr3L_12_25105001 chr3L_25105001 RAL-176 1342 chr3L 25268563 25268579 chr3L 25268644 25268660 5 81 2.5 1.0 1.8 1.8 97 chr3L 25268563 intron CG40467 - chr3L 25268612 intron CG40467 - chr3L 25268660 intron CG40467 - chr3L_5_25265001 chr3L_25265001 RAL-176 1343 chr3L 25464085 25464099 chr3L 25464182 25464197 14 97 11.5 14.5 13.0 1.0 112 chr3L 25464085 intergenic not near genes chr3L 25464141 intergenic not near genes chr3L 25464197 intergenic not near genes chr3L_14_25460001 chr3L_25460001 RAL-176 1344 chr3L 25512790 25512808 chr3L 25512868 25512886 6 78 1.0 2.0 1.5 2.4 96 chr3L 25512790 intron CG41343 - chr3L 25512838 intron CG41343 - chr3L 25512886 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-176 1345 chr3L 25513578 25513604 chr3L 25513657 25513681 6 78 3.5 4.0 3.8 1.2 103 chr3L 25513578 intron CG41343 - chr3L 25513630 intron CG41343 - chr3L 25513681 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-176 1346 chr3L 25514873 25514902 chr3L 25514965 25514994 15 87 3.0 3.0 3.0 3.8 121 chr3L 25514873 intron CG41343 - chr3L 25514934 intron CG41343 - chr3L 25514994 intron CG41343 - chr3L_15_25510001 chr3L_25510001 RAL-176 1347 chr3L 25842487 25842501 chr3L 25842573 25842587 8 86 3.5 3.5 3.5 1.8 100 chr3L 25842487 intron CG40178 - chr3L 25842537 intron CG40178 - chr3L 25842587 intron CG40178 - chr3L_8_25840001 chr3L_25840001 RAL-176 1348 chr3L 25886867 25886897 chr3L 25887269 25887300 9 402 4.0 5.5 4.8 1.6 433 chr3L 25886867 intron CG40178 - chr3L 25887084 intron CG40178 - chr3L 25887300 intron CG40178 - chr3L_9_25885001 chr3L_25885001 RAL-176 1349 chr3L 26009437 26009454 chr3L 26009527 26009545 4 91 2.0 4.5 3.2 1.0 108 chr3L 26009437 intron CG40178 - chr3L 26009491 intron CG40178 - chr3L 26009545 intron CG40178 - chr3L_4_26005001 chr3L_26005001 RAL-176 1350 chr3L 26350920 26350950 chr3L 26351019 26351050 4 100 2.5 2.5 2.5 1.1 130 chr3L 26350920 intergenic not near genes chr3L 26350985 intergenic not near genes chr3L 26351050 intergenic not near genes chr3L_4_26350001 chr3L_26350001 RAL-176 1351 chr3L 26694945 26694950 chr3L 26695011 26695030 5 77 3.5 1.0 2.2 1.6 85 chr3L 26694945 intergenic not near genes chr3L 26694988 intergenic not near genes chr3L 26695030 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-176 1352 chr3L 27167949 27167973 chr3L 27168069 27168093 10 118 5.5 8.5 7.0 1.2 144 chr3L 27167949 intergenic not near genes chr3L 27168021 intergenic not near genes chr3L 27168093 intergenic not near genes chr3L_10_27165001 chr3L_27165001 RAL-176 1353 chr3L 27368879 27368910 chr3L 27369423 27369455 5 545 1.0 0.0 0.5 3.3 576 chr3L 27368879 intron Dbp80 + chr3L 27369167 intron Dbp80 + chr3L 27369455 intron Dbp80 + chr3L_5_27365001 chr3L_27365001 RAL-176 1354 chr3L 27390693 27390711 chr3L 27390772 27390790 4 78 32.5 35.5 34.0 0.1 97 chr3L 27390693 intron Dbp80 + chr3L 27390742 intron Dbp80 + chr3L 27390790 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-176 1355 chr3R 892055 892062 chr3R 892286 892290 6 231 6.5 10.5 8.5 0.6 235 chr3R 892055 intron CG42621 + chr3R 892172 intron CG42621 + chr3R 892290 intron CG42621 + chr3R_6_890001 chr3R_890001 RAL-176 1356 chr3R 1062392 1062415 chr3R 1062550 1062573 4 158 0.0 3.0 1.5 1.6 181 chr3R 1062392 intron CG15831 + chr3R 1062482 intron CG15831 + chr3R 1062573 intron CG15831 + chr3R_4_1060001 chr3R_1060001 RAL-176 1357 chr3R 1312086 1312111 chr3R 1312166 1312202 6 78 1.0 1.0 1.0 3.0 116 chr3R 1312086 intergenic not near genes chr3R 1312144 intergenic not near genes chr3R 1312202 intergenic not near genes chr3R_6_1310001 chr3R_1310001 RAL-176 1358 chr3R 1443434 1443451 chr3R 1443509 1443525 8 76 3.0 1.5 2.2 2.5 91 chr3R 1443434 intron CG40155 + chr3R 1443480 intron CG40155 + chr3R 1443525 intron CG40155 + chr3R_8_1440001 chr3R_1440001 RAL-176 1359 chr3R 1540507 1540522 chr3R 1540594 1540608 5 86 3.0 8.5 5.8 0.7 101 chr3R 1540507 intergenic not near genes chr3R 1540558 intergenic not near genes chr3R 1540608 intergenic not near genes chr3R_5_1540001 chr3R_1540001 RAL-176 1360 chr3R 2534135 2534167 chr3R 2541703 2541736 11 7559 19.5 22.5 21.0 0.5 7601 chr3R 2534135 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_11_2535001 chr3R_2535001 RAL-176 1361 chr3R 3877470 3877504 chr3R 3877611 3877644 15 138 6.5 6.0 6.2 2.1 174 chr3R 3877470 intergenic not near genes chr3R 3877557 intergenic not near genes chr3R 3877644 intergenic not near genes chr3R_15_3875001 chr3R_3875001 RAL-176 1362 chr3R 4206079 4206101 chr3R 4211654 4211676 mdg3 9 5575 3.0 4.0 3.5 2.0 5597 chr3R 4206079 intron CG14636 - chr3R 4208878 intron CG14636 - chr3R 4211676 intron CG14636 - chr3R_9_4205001 chr3R_4205001 RAL-176 1363 chr3R 4214814 4214822 chr3R 4215048 4215051 4 244 7.0 5.5 6.2 0.6 237 chr3R 4214814 intron,intron CG14636 -,aux + chr3R 4214932 intron,intron CG14636 -,aux + chr3R 4215051 intron,intron CG14636 -,aux + chr3R_4_4210001 chr3R_4210001 RAL-176 1364 chr3R 4220152 4220174 chr3R 4220254 4220276 4 102 36.5 40.0 38.2 0.1 124 chr3R 4220152 intron aux + chr3R 4220214 intron aux + chr3R 4220276 intron aux + chr3R_4_4220001 chr3R_4220001 RAL-176 1365 chr3R 4408411 4408442 chr3R 4412715 4412746 Juan 6 4303 5.0 5.0 5.0 1.0 4335 chr3R 4408411 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-176 1366 chr3R 4553697 4553730 chr3R 19449334 19449368 18 14895637 8.5 0.0 4.2 3.5 14895671 chr3R 4553697 intron CG34357 - chr3R 12001532 intron,exon Tk -,Ect3 + chr3R 19449368 intron CG31221 + chr3R_18_12000001 chr3R_12000001 RAL-176 1367 chr3R 4599299 4599331 chr3R 4599383 4599415 4 84 0.0 0.0 0.0 4.0 116 chr3R 4599299 intron CR44317 - chr3R 4599357 intron CR44317 - chr3R 4599415 intron CR44317 - chr3R_4_4595001 chr3R_4595001 RAL-176 1368 chr3R 4625314 4625348 chr3R 4625700 4625731 27 383 9.0 8.0 8.5 2.8 417 chr3R 4625314 intron 5-HT2A + chr3R 4625522 intron 5-HT2A + chr3R 4625731 intron 5-HT2A + chr3R_27_4625001 chr3R_4625001 RAL-176 1369 chr3R 4764459 4764493 chr3R 4764692 4764726 16 233 4.5 2.5 3.5 3.6 267 chr3R 4764459 intron,intron atms +,CG44098 - chr3R 4764592 intron,intron atms +,CG44098 - chr3R 4764726 intron,intron atms +,CG44098 - chr3R_16_4760001 chr3R_4760001 RAL-176 1370 chr3R 4769163 4769191 chr3R 4769236 4769269 14 77 4.5 2.5 3.5 3.1 106 chr3R 4769163 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_14_4765001 chr3R_4765001 RAL-176 1371 chr3R 4856750 4856778 chr3R 4856837 4856843 12 83 7.5 2.5 5.0 2.0 93 chr3R 4856750 intron opa + chr3R 4856796 intron opa + chr3R 4856843 intron opa + chr3R_12_4855001 chr3R_4855001 RAL-176 1372 chr3R 4861573 4861598 chr3R 4861651 4861679 12 79 4.5 8.5 6.5 1.6 106 chr3R 4861573 intron opa + chr3R 4861626 intron opa + chr3R 4861679 intron opa + chr3R_12_4860001 chr3R_4860001 RAL-176 1373 chr3R 4887482 4887500 chr3R 4894855 4894877 rover 5 7376 7.0 5.0 6.0 0.7 7395 chr3R 4887482 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894877 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-176 1374 chr3R 4918103 4918133 chr3R 4918297 4918331 19 196 10.5 5.0 7.8 2.2 228 chr3R 4918103 exon Cdep + chr3R 4918217 intron Cdep + chr3R 4918331 intron Cdep + chr3R_19_4915001 chr3R_4915001 RAL-176 1375 chr3R 4948388 4948391 chr3R 4949010 4949013 4 621 8.5 24.5 16.5 0.2 625 chr3R 4948388 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948700 intergenic UbcD6 - chr3R 4949013 3` UTR UbcD6 - chr3R_4_4945001 chr3R_4945001 RAL-176 1376 chr3R 4997319 4997347 chr3R 4997530 4997558 5 211 2.0 2.5 2.2 1.6 239 chr3R 4997319 intron CG2022 - chr3R 4997438 intron CG2022 - chr3R 4997558 intron CG2022 - chr3R_5_4995001 chr3R_4995001 RAL-176 1377 chr3R 5045850 5045875 chr3R 5052952 5052977 HMS-Beagle 7 7101 7.5 4.0 5.8 1.0 7127 chr3R 5045850 intron CR43635 - chr3R 5049414 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-176 1378 chr3R 5067984 5068009 chr3R 5073498 5073526 mdg3 8 5516 4.0 4.5 4.2 1.5 5542 chr3R 5067984 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_8_5070001 chr3R_5070001 RAL-176 1379 chr3R 5131344 5131373 chr3R 5131423 5131452 22 78 4.5 6.5 5.5 3.4 108 chr3R 5131344 intergenic not near genes chr3R 5131398 intergenic not near genes chr3R 5131452 intergenic not near genes chr3R_22_5130001 chr3R_5130001 RAL-176 1380 chr3R 5143190 5143214 chr3R 5143342 5143352 9 146 2.5 3.0 2.8 2.4 162 chr3R 5143190 intergenic not near genes chr3R 5143271 intergenic not near genes chr3R 5143352 intergenic not near genes chr3R_9_5140001 chr3R_5140001 RAL-176 1381 chr3R 5236222 5236246 chr3R 5236350 5236373 11 125 3.0 7.5 5.2 1.8 151 chr3R 5236222 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236298 3` UTR rtp - chr3R 5236373 3` UTR rtp - chr3R_11_5235001 chr3R_5235001 RAL-176 1382 chr3R 5282373 5282403 chr3R 5283390 5283426 24 1023 48.5 49.0 48.8 0.5 1053 chr3R 5282373 intron mtd - chr3R 5282900 intron mtd - chr3R 5283426 intron mtd - chr3R_24_5280001 chr3R_5280001 RAL-176 1383 chr3R 5335161 5335179 chr3R 5335240 5335258 6 76 3.5 2.0 2.8 1.6 97 chr3R 5335161 intron mtd - chr3R 5335210 intron mtd - chr3R 5335258 intron mtd - chr3R_6_5335001 chr3R_5335001 RAL-176 1384 chr3R 5338395 5338429 chr3R 5343572 5343587 Rt1c 9 5174 3.5 5.0 4.2 1.7 5192 chr3R 5338395 intron mtd - chr3R 5340991 intron mtd - chr3R 5343587 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-176 1385 chr3R 5367390 5367395 chr3R 5367724 5367729 6 334 31.5 78.5 55.0 0.1 339 chr3R 5367390 intron Cerk - chr3R 5367560 intron Cerk - chr3R 5367729 intron Cerk - chr3R_6_5365001 chr3R_5365001 RAL-176 1386 chr3R 5367389 5367419 chr3R 5367730 5367753 9 335 36.0 78.5 57.2 0.2 364 chr3R 5367389 intron Cerk - chr3R 5367571 intron Cerk - chr3R 5367753 intron Cerk - chr3R_9_5365001 chr3R_5365001 RAL-176 1387 chr3R 5445960 5445994 chr3R 5452420 5452454 Burdock 15 6460 0.0 2.5 1.2 6.8 6494 chr3R 5445960 intron CG14669 + chr3R 5449207 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_15_5445001 chr3R_5445001 RAL-176 1388 chr3R 5453315 5453347 chr3R 5453428 5453445 11 109 6.5 3.5 5.0 1.8 130 chr3R 5453315 intron CG14669 + chr3R 5453380 intron CG14669 + chr3R 5453445 intron CG14669 + chr3R_11_5450001 chr3R_5450001 RAL-176 1389 chr3R 5698116 5698141 chr3R 5698211 5698236 7 93 1.0 7.0 4.0 1.4 120 chr3R 5698116 intron plx + chr3R 5698176 intron plx + chr3R 5698236 intron plx + chr3R_7_5695001 chr3R_5695001 RAL-176 1390 chr3R 5746013 5746046 chr3R 5746254 5746265 pogo 25 239 9.5 12.0 10.8 2.1 252 chr3R 5746013 3` UTR Madm + chr3R 5746139 3` UTR Madm + chr3R 5746265 3` UTR Madm + chr3R_25_5745001 chr3R_5745001 RAL-176 1391 chr3R 5809116 5809142 chr3R 5809356 5809383 pogo 12 238 10.5 7.0 8.8 1.2 267 chr3R 5809116 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_12_5805001 chr3R_5805001 RAL-176 1392 chr3R 5822379 5822393 chr3R 5823546 5823560 1360 5 1167 9.0 5.0 7.0 0.6 1181 chr3R 5822379 3` UTR CG2023 - chr3R 5822970 3` UTR CG2023 - chr3R 5823560 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-176 1393 chr3R 5822395 5822409 chr3R 5823560 5823576 1360 4 1166 4.5 9.0 6.8 0.5 1181 chr3R 5822395 3` UTR CG2023 - chr3R 5822986 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_4_5820001 chr3R_5820001 RAL-176 1394 chr3R 5840820 5840853 chr3R 5840909 5840942 24 88 7.0 4.0 5.5 3.7 122 chr3R 5840820 intergenic CG1213 + chr3R 5840881 intergenic CG1213 + chr3R 5840942 intergenic CG1213 + chr3R_24_5840001 chr3R_5840001 RAL-176 1395 chr3R 5927562 5927591 chr3R 5927799 5927831 pogo 13 238 3.0 4.0 3.5 2.9 269 chr3R 5927562 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_13_5925001 chr3R_5925001 RAL-176 1396 chr3R 5942476 5942496 chr3R 5942573 5942594 14 98 3.0 2.5 2.8 3.7 118 chr3R 5942476 intron CG34113 - chr3R 5942535 intron CG34113 - chr3R 5942594 intron CG34113 - chr3R_14_5940001 chr3R_5940001 RAL-176 1397 chr3R 5943408 5943417 chr3R 5943482 5943496 4 78 2.5 2.0 2.2 1.2 88 chr3R 5943408 intron CG34113 - chr3R 5943452 intron CG34113 - chr3R 5943496 intron CG34113 - chr3R_4_5940001 chr3R_5940001 RAL-176 1398 chr3R 6141918 6141953 chr3R 6141994 6142029 19 75 5.5 7.5 6.5 2.5 111 chr3R 6141918 intergenic not near genes chr3R 6141974 intergenic not near genes chr3R 6142029 intergenic not near genes chr3R_19_6140001 chr3R_6140001 RAL-176 1399 chr3R 6158513 6158541 chr3R 6167096 6167124 Tirant 18 8582 12.0 10.0 11.0 1.5 8611 chr3R 6158513 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167124 intergenic CG1077 + chr3R_18_6160001 chr3R_6160001 RAL-176 1400 chr3R 6175189 6175207 chr3R 6182461 6182465 HMS-Beagle2 4 7268 5.0 4.0 4.5 0.7 7276 chr3R 6175189 intergenic Osi1 + chr3R 6178827 intron CR45194 + chr3R 6182465 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-176 1401 chr3R 6206291 6206310 chr3R 6206508 6206527 BS 7 216 9.5 5.0 7.2 0.9 236 chr3R 6206291 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206527 intron Osi24 + chr3R_7_6205001 chr3R_6205001 RAL-176 1402 chr3R 6206314 6206319 chr3R 6206507 6206532 BS 4 210 4.5 4.5 4.5 0.7 218 chr3R 6206314 exon Osi24 + chr3R 6206423 intron Osi24 + chr3R 6206532 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-176 1403 chr3R 6343706 6343725 chr3R 6343809 6343828 12 102 2.5 2.5 2.5 3.4 122 chr3R 6343706 3` UTR CG10298 + chr3R 6343767 3` UTR CG10298 + chr3R 6343828 intergenic CG10298 +,CG17919 + chr3R_12_6340001 chr3R_6340001 RAL-176 1404 chr3R 6510023 6510054 chr3R 6515104 6515135 jockey 6 5081 0.5 2.5 1.5 2.4 5112 chr3R 6510023 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515135 intergenic not near genes chr3R_6_6510001 chr3R_6510001 RAL-176 1405 chr3R 6519114 6519138 chr3R 6519221 6519245 6 108 5.0 0.5 2.8 1.6 131 chr3R 6519114 intergenic not near genes chr3R 6519180 intergenic not near genes chr3R 6519245 intergenic not near genes chr3R_6_6515001 chr3R_6515001 RAL-176 1406 chr3R 6538206 6538234 chr3R 6538304 6538332 21 96 3.5 2.5 3.0 5.2 126 chr3R 6538206 intron dpr11 - chr3R 6538269 intron dpr11 - chr3R 6538332 exon dpr11 - chr3R_21_6535001 chr3R_6535001 RAL-176 1407 chr3R 6550324 6550352 chr3R 6550403 6550432 24 80 6.5 10.0 8.2 2.6 108 chr3R 6550324 intron dpr11 - chr3R 6550378 intron dpr11 - chr3R 6550432 intron dpr11 - chr3R_24_6550001 chr3R_6550001 RAL-176 1408 chr3R 6551110 6551140 chr3R 6551204 6551234 31 94 4.5 9.0 6.8 4.0 124 chr3R 6551110 intron dpr11 - chr3R 6551172 intron dpr11 - chr3R 6551234 intron dpr11 - chr3R_31_6550001 chr3R_6550001 RAL-176 1409 chr3R 6639916 6639932 chr3R 6639991 6640000 6 74 8.0 0.0 4.0 1.2 84 chr3R 6639916 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640000 intergenic not near genes chr3R_6_6635001 chr3R_6635001 RAL-176 1410 chr3R 6688037 6688052 chr3R 6688199 6688214 5 162 0.5 3.5 2.0 1.7 177 chr3R 6688037 3` UTR Ccp84Ag + chr3R 6688126 intergenic Ccp84Ag + chr3R 6688214 intergenic Ccp84Ag + chr3R_5_6685001 chr3R_6685001 RAL-176 1411 chr3R 6698006 6698032 chr3R 6698084 6698111 11 78 3.5 5.0 4.2 2.1 105 chr3R 6698006 intergenic not near genes chr3R 6698058 intergenic not near genes chr3R 6698111 intergenic not near genes chr3R_11_6695001 chr3R_6695001 RAL-176 1412 chr3R 6737497 6737531 chr3R 6739284 6739316 Doc 10 1786 1.0 4.5 2.8 2.6 1819 chr3R 6737497 intron pb - chr3R 6738406 intron pb - chr3R 6739316 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-176 1413 chr3R 6862220 6862251 chr3R 6862307 6862335 12 86 2.0 4.0 3.0 3.0 115 chr3R 6862220 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862335 intergenic not near genes chr3R_12_6860001 chr3R_6860001 RAL-176 1414 chr3R 6866367 6866399 chr3R 6866676 6866707 19 307 2.0 6.0 4.0 3.8 340 chr3R 6866367 intergenic ftz + chr3R 6866537 intergenic ftz + chr3R 6866707 intergenic ftz + chr3R_19_6865001 chr3R_6865001 RAL-176 1415 chr3R 6918061 6918087 chr3R 6918139 6918165 11 78 6.0 3.0 4.5 2.0 104 chr3R 6918061 intron Antp - chr3R 6918113 intron Antp - chr3R 6918165 intron Antp - chr3R_11_6915001 chr3R_6915001 RAL-176 1416 chr3R 7022266 7022280 chr3R 7022557 7022571 5 291 2.0 3.5 2.8 1.3 305 chr3R 7022266 intergenic not near genes chr3R 7022418 intergenic not near genes chr3R 7022571 intergenic not near genes chr3R_5_7020001 chr3R_7020001 RAL-176 1417 chr3R 7049566 7049573 chr3R 7049650 7049657 4 84 2.0 2.0 2.0 1.3 91 chr3R 7049566 intergenic not near genes chr3R 7049612 intergenic not near genes chr3R 7049657 intergenic not near genes chr3R_4_7045001 chr3R_7045001 RAL-176 1418 chr3R 7060736 7060768 chr3R 7060818 7060852 4 84 0.5 1.5 1.0 2.0 116 chr3R 7060736 intergenic djl +,dj + chr3R 7060794 5` UTR djl + chr3R 7060852 5` UTR djl + chr3R_4_7060001 chr3R_7060001 RAL-176 1419 chr3R 7103283 7103319 chr3R 7103359 7103364 22 72 8.5 7.5 8.0 2.4 81 chr3R 7103283 intron Alh - chr3R 7103324 intron Alh - chr3R 7103364 intron Alh - chr3R_22_7100001 chr3R_7100001 RAL-176 1420 chr3R 7206882 7206904 chr3R 7206965 7206991 8 85 4.5 4.5 4.5 1.5 109 chr3R 7206882 intergenic CG1288 - chr3R 7206936 intergenic CG1288 - chr3R 7206991 intergenic CG1288 - chr3R_8_7205001 chr3R_7205001 RAL-176 1421 chr3R 7372998 7373017 chr3R 7373073 7373092 4 77 4.0 6.5 5.2 0.6 94 chr3R 7372998 intergenic not near genes chr3R 7373045 intergenic not near genes chr3R 7373092 intergenic not near genes chr3R_4_7370001 chr3R_7370001 RAL-176 1422 chr3R 7385582 7385615 chr3R 7385657 7385690 17 74 2.5 3.5 3.0 4.2 108 chr3R 7385582 intergenic not near genes chr3R 7385636 intergenic not near genes chr3R 7385690 intergenic not near genes chr3R_17_7385001 chr3R_7385001 RAL-176 1423 chr3R 7444121 7444145 chr3R 7444214 7444239 11 93 6.5 7.5 7.0 1.4 118 chr3R 7444121 intergenic not near genes chr3R 7444180 intergenic not near genes chr3R 7444239 intergenic not near genes chr3R_11_7440001 chr3R_7440001 RAL-176 1424 chr3R 7447995 7448004 chr3R 7448073 7448082 4 78 6.5 3.5 5.0 0.7 87 chr3R 7447995 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448082 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-176 1425 chr3R 7464690 7464724 chr3R 7464776 7464810 20 86 2.0 3.0 2.5 5.7 120 chr3R 7464690 intergenic not near genes chr3R 7464750 intergenic not near genes chr3R 7464810 intergenic not near genes chr3R_20_7460001 chr3R_7460001 RAL-176 1426 chr3R 7548611 7548628 chr3R 7548690 7548707 4 79 1.0 4.0 2.5 1.1 96 chr3R 7548611 intron alpha-Est1 - chr3R 7548659 intron alpha-Est1 - chr3R 7548707 intron alpha-Est1 - chr3R_4_7545001 chr3R_7545001 RAL-176 1427 chr3R 7556935 7556966 chr3R 7557028 7557059 20 92 3.0 2.5 2.8 5.3 124 chr3R 7556935 intergenic not near genes chr3R 7556997 intergenic not near genes chr3R 7557059 intergenic not near genes chr3R_20_7555001 chr3R_7555001 RAL-176 1428 chr3R 7621548 7621562 chr3R 7621638 7621652 7 90 0.0 4.5 2.2 2.2 104 chr3R 7621548 intron CG34127 - chr3R 7621600 intron CG34127 - chr3R 7621652 intron CG34127 - chr3R_7_7620001 chr3R_7620001 RAL-176 1429 chr3R 7677917 7677944 chr3R 7678030 7678057 8 111 1.0 4.0 2.5 2.3 140 chr3R 7677917 intron Nlg1 + chr3R 7677987 intron Nlg1 + chr3R 7678057 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-176 1430 chr3R 7694583 7694610 chr3R 7713644 7713671 invader3 6 19061 1.5 2.0 1.8 2.1 19088 chr3R 7694583 3` UTR Nlg1 + chr3R 7704127 intergenic not near genes chr3R 7713671 intergenic not near genes chr3R_6_7700001 chr3R_7700001 RAL-176 1431 chr3R 7724451 7724463 chr3R 7724539 7724553 8 89 6.5 8.5 7.5 0.9 102 chr3R 7724451 3` UTR CG2616 + chr3R 7724502 3` UTR CG2616 + chr3R 7724553 3` UTR CG2616 + chr3R_8_7720001 chr3R_7720001 RAL-176 1432 chr3R 7724469 7724474 chr3R 7724533 7724564 4 76 3.5 8.0 5.8 0.6 95 chr3R 7724469 3` UTR CG2616 + chr3R 7724516 3` UTR CG2616 + chr3R 7724564 3` UTR CG2616 + chr3R_4_7720001 chr3R_7720001 RAL-176 1433 chr3R 7729464 7729496 chr3R 7737402 7737434 Stalker2 11 7936 2.0 5.5 3.8 2.3 7970 chr3R 7729464 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_11_7730001 chr3R_7730001 RAL-176 1434 chr3R 7857417 7857454 chr3R 7857504 7857541 9 87 4.0 5.0 4.5 1.6 124 chr3R 7857417 3` UTR CG17816 - chr3R 7857479 3` UTR CG17816 - chr3R 7857541 3` UTR CG17816 - chr3R_9_7855001 chr3R_7855001 RAL-176 1435 chr3R 7883125 7883157 chr3R 7883203 7883235 15 77 5.5 2.0 3.8 3.1 110 chr3R 7883125 intron CG17816 - chr3R 7883180 intron CG17816 - chr3R 7883235 intron CG17816 - chr3R_15_7880001 chr3R_7880001 RAL-176 1436 chr3R 7948448 7948469 chr3R 7948522 7948530 9 71 3.5 4.5 4.0 1.8 82 chr3R 7948448 intron dsx - chr3R 7948489 intron dsx - chr3R 7948530 intron dsx - chr3R_9_7945001 chr3R_7945001 RAL-176 1437 chr3R 7955936 7955944 chr3R 7956013 7956020 4 77 14.5 4.0 9.2 0.4 84 chr3R 7955936 intron dsx - chr3R 7955978 intron dsx - chr3R 7956020 intron dsx - chr3R_4_7955001 chr3R_7955001 RAL-176 1438 chr3R 7955945 7955966 chr3R 7956011 7956041 14 75 7.5 3.5 5.5 2.2 96 chr3R 7955945 intron dsx - chr3R 7955993 intron dsx - chr3R 7956041 intron dsx - chr3R_14_7955001 chr3R_7955001 RAL-176 1439 chr3R 7973319 7973344 chr3R 7974381 7974406 1360 4 1058 2.0 2.5 2.2 1.2 1087 chr3R 7973319 intergenic not near genes chr3R 7973862 intergenic not near genes chr3R 7974406 intergenic CD98hc - chr3R_4_7970001 chr3R_7970001 RAL-176 1440 chr3R 8056888 8056915 chr3R 8056969 8056969 6 76 2.0 4.5 3.2 1.4 81 chr3R 8056888 intergenic not near genes chr3R 8056928 intergenic not near genes chr3R 8056969 intergenic not near genes chr3R_6_8055001 chr3R_8055001 RAL-176 1441 chr3R 8094406 8094437 chr3R 8099711 8099742 Transpac 9 5305 3.0 4.0 3.5 2.0 5336 chr3R 8094406 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099742 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-176 1442 chr3R 8101786 8101792 chr3R 8104847 8104876 G2 4 3078 3.0 3.5 3.2 1.0 3090 chr3R 8101786 exon CG7900 + chr3R 8103331 intron CG7900 + chr3R 8104876 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-176 1443 chr3R 8144767 8144797 chr3R 8144847 8144869 17 79 8.5 4.0 6.2 2.4 102 chr3R 8144767 intergenic not near genes chr3R 8144818 intergenic not near genes chr3R 8144869 intergenic not near genes chr3R_17_8140001 chr3R_8140001 RAL-176 1444 chr3R 8158030 8158051 chr3R 8158110 8158126 13 79 6.5 9.0 7.8 1.5 96 chr3R 8158030 intron grn - chr3R 8158078 intron grn - chr3R 8158126 intron grn - chr3R_13_8155001 chr3R_8155001 RAL-176 1445 chr3R 8182653 8182664 chr3R 8182746 8182758 8 94 8.0 5.5 6.8 1.0 105 chr3R 8182653 intergenic not near genes chr3R 8182706 intergenic not near genes chr3R 8182758 intergenic not near genes chr3R_8_8180001 chr3R_8180001 RAL-176 1446 chr3R 8182672 8182684 chr3R 8182766 8182778 7 94 4.0 8.0 6.0 1.0 106 chr3R 8182672 intergenic not near genes chr3R 8182725 intergenic not near genes chr3R 8182778 intergenic not near genes chr3R_7_8180001 chr3R_8180001 RAL-176 1447 chr3R 8188390 8188527 chr3R 8188468 8188618 8 86 1.0 1.5 1.2 3.6 228 chr3R 8188390 intergenic not near genes chr3R 8188504 intergenic not near genes chr3R 8188618 intergenic not near genes chr3R_8_8185001 chr3R_8185001 RAL-176 1448 chr3R 8207563 8207587 chr3R 8208402 8208432 F-element 6 844 3.5 8.5 6.0 0.9 869 chr3R 8207563 intergenic not near genes chr3R 8207998 intergenic not near genes chr3R 8208432 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-176 1449 chr3R 8218475 8218499 chr3R 8218569 8218593 19 93 7.5 10.0 8.8 1.9 118 chr3R 8218475 exon CG7800 + chr3R 8218534 exon CG7800 + chr3R 8218593 exon CG7800 + chr3R_19_8215001 chr3R_8215001 RAL-176 1450 chr3R 8339244 8339247 chr3R 21907534 21907536 34 13568288 24.0 42.0 33.0 1.0 13568292 chr3R 8339244 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_34_15120001 chr3R_15120001 RAL-176 1451 chr3R 8393598 8393603 chr3R 8393682 8393687 5 83 6.0 10.5 8.2 0.5 89 chr3R 8393598 intron CG45263 - chr3R 8393642 intron CG45263 - chr3R 8393687 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-176 1452 chr3R 8403008 8403037 chr3R 8412171 8412203 roo 23 9164 8.0 7.5 7.8 2.6 9195 chr3R 8403008 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_23_8405001 chr3R_8405001 RAL-176 1453 chr3R 8472017 8472054 chr3R 8472370 8472407 19 351 1.0 5.0 3.0 4.8 390 chr3R 8472017 intron CG45263 - chr3R 8472212 intron CG45263 - chr3R 8472407 intron CG45263 - chr3R_19_8470001 chr3R_8470001 RAL-176 1454 chr3R 8554546 8554581 chr3R 8554671 8554693 11 123 1.0 2.0 1.5 4.4 147 chr3R 8554546 intergenic not near genes chr3R 8554620 intergenic not near genes chr3R 8554693 intergenic not near genes chr3R_11_8550001 chr3R_8550001 RAL-176 1455 chr3R 8570479 8570510 chr3R 8575112 8575133 HMS-Beagle 11 4632 7.5 8.5 8.0 1.2 4654 chr3R 8570479 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575133 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-176 1456 chr3R 8601766 8601799 chr3R 8610919 8610951 roo 17 9150 9.0 2.5 5.8 2.5 9185 chr3R 8601766 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_17_8605001 chr3R_8605001 RAL-176 1457 chr3R 8612090 8612108 chr3R 8612169 8612186 5 79 5.5 1.5 3.5 1.1 96 chr3R 8612090 intron 5-HT2B + chr3R 8612138 intron 5-HT2B + chr3R 8612186 intron 5-HT2B + chr3R_5_8610001 chr3R_8610001 RAL-176 1458 chr3R 8617883 8617885 chr3R 8618235 8618241 4 354 15.0 6.5 10.8 0.3 358 chr3R 8617883 intron 5-HT2B + chr3R 8618062 intron 5-HT2B + chr3R 8618241 intron 5-HT2B + chr3R_4_8615001 chr3R_8615001 RAL-176 1459 chr3R 8617887 8617909 chr3R 8618234 8618265 9 353 7.5 6.5 7.0 1.1 378 chr3R 8617887 intron 5-HT2B + chr3R 8618076 intron 5-HT2B + chr3R 8618265 intron 5-HT2B + chr3R_9_8615001 chr3R_8615001 RAL-176 1460 chr3R 8642419 8642448 chr3R 8642496 8642524 13 74 1.5 5.0 3.2 3.1 105 chr3R 8642419 intergenic not near genes chr3R 8642472 intergenic not near genes chr3R 8642524 intergenic not near genes chr3R_13_8640001 chr3R_8640001 RAL-176 1461 chr3R 8707355 8707369 chr3R 8709796 8709809 jockey 4 2441 11.0 12.0 11.5 0.3 2454 chr3R 8707355 intergenic not near genes chr3R 8708582 intergenic not near genes chr3R 8709809 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-176 1462 chr3R 8707371 8707385 chr3R 8709789 8709826 jockey 11 2438 7.0 8.5 7.8 1.2 2455 chr3R 8707371 intergenic not near genes chr3R 8708598 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-176 1463 chr3R 8758470 8758491 chr3R 8758561 8758581 7 90 7.0 0.0 3.5 1.6 111 chr3R 8758470 intron,intron CG11768 -,CG34135 - chr3R 8758526 intron,intron CG11768 -,CG34135 - chr3R 8758581 intron,intron CG11768 -,CG34135 - chr3R_7_8755001 chr3R_8755001 RAL-176 1464 chr3R 8917896 8917910 chr3R 8917976 8917987 6 79 3.5 5.0 4.2 1.2 91 chr3R 8917896 intron pyd - chr3R 8917942 intron pyd - chr3R 8917987 intron pyd - chr3R_6_8915001 chr3R_8915001 RAL-176 1465 chr3R 9025658 9025688 chr3R 9025744 9025775 17 86 7.5 3.5 5.5 2.6 117 chr3R 9025658 intron neur - chr3R 9025716 intron neur - chr3R 9025775 intron neur - chr3R_17_9025001 chr3R_9025001 RAL-176 1466 chr3R 9036724 9036739 chr3R 9036820 9036834 6 96 0.5 2.0 1.2 2.7 110 chr3R 9036724 intron neur - chr3R 9036779 intron neur - chr3R 9036834 intron neur - chr3R_6_9035001 chr3R_9035001 RAL-176 1467 chr3R 9082046 9082071 chr3R 9082136 9082153 18 93 10.0 8.5 9.2 1.8 107 chr3R 9082046 intron pum - chr3R 9082100 intron pum - chr3R 9082153 intron pum - chr3R_18_9080001 chr3R_9080001 RAL-176 1468 chr3R 9101839 9101864 chr3R 9101937 9101962 7 98 1.0 5.0 3.0 1.8 123 chr3R 9101839 intron pum - chr3R 9101900 intron pum - chr3R 9101962 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-176 1469 chr3R 9211468 9211489 chr3R 9211663 9211684 5 195 2.0 1.5 1.8 1.8 216 chr3R 9211468 intron pum - chr3R 9211576 intron pum - chr3R 9211684 intron pum - chr3R_5_9210001 chr3R_9210001 RAL-176 1470 chr3R 9278779 9278801 chr3R 9284039 9284061 Rt1a 7 5259 14.5 10.5 12.5 0.5 5282 chr3R 9278779 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284061 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-176 1471 chr3R 9278806 9278811 chr3R 9284038 9284071 Rt1a 5 5247 8.5 10.5 9.5 0.5 5265 chr3R 9278806 intergenic not near genes chr3R 9281438 intergenic not near genes chr3R 9284071 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-176 1472 chr3R 9319576 9319607 chr3R 9320010 9320042 jockey 8 434 3.0 5.5 4.2 1.5 466 chr3R 9319576 intron CG8861 - chr3R 9319809 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_8_9315001 chr3R_9315001 RAL-176 1473 chr3R 9361820 9361847 chr3R 9362057 9362088 pogo 4 240 1.5 2.5 2.0 1.3 268 chr3R 9361820 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362088 3` UTR CG45050 + chr3R_4_9360001 chr3R_9360001 RAL-176 1474 chr3R 9379169 9379175 chr3R 9379251 9379257 4 82 0.0 7.5 3.8 0.8 88 chr3R 9379169 intron FER - chr3R 9379213 intron FER - chr3R 9379257 intron FER - chr3R_4_9375001 chr3R_9375001 RAL-176 1475 chr3R 9382818 9382848 chr3R 9382943 9382973 10 124 4.5 2.0 3.2 2.4 155 chr3R 9382818 intron FER - chr3R 9382896 intron FER - chr3R 9382973 intron FER - chr3R_10_9380001 chr3R_9380001 RAL-176 1476 chr3R 9620956 9620960 chr3R 21907534 21907534 19 12286579 17.0 42.0 29.5 0.6 12286578 chr3R 9620956 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_19_15760001 chr3R_15760001 RAL-176 1477 chr3R 9781167 9781191 chr3R 9787182 9787209 7 6021 39.0 37.5 38.2 0.2 6042 chr3R 9781167 3` UTR,intron CR31514 -,CG12947 + chr3R 9784188 intron MtnA - chr3R 9787209 3` UTR CG8500 + chr3R_7_9780001 chr3R_9780001 RAL-176 1478 chr3R 9862177 9862179 chr3R 11907643 11907644 4 2045466 20.0 23.5 21.8 0.2 2045467 chr3R 9862177 intron Teh1 - chr3R 10884910 5` UTR CG14696 - chr3R 11907644 intron Cad87A - chr3R_4_10880001 chr3R_10880001 RAL-176 1479 chr3R 9898788 9898819 chr3R 9898880 9898911 15 90 3.0 3.0 3.0 3.8 123 chr3R 9898788 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898911 intron Glut4EF + chr3R_15_9895001 chr3R_9895001 RAL-176 1480 chr3R 10231794 10231815 chr3R 10237371 10237392 mdg3 5 5576 1.5 7.5 4.5 0.9 5598 chr3R 10231794 intron CG42795 + chr3R 10234593 intron CG42795 + chr3R 10237392 intron CG42795 + chr3R_5_10230001 chr3R_10230001 RAL-176 1481 chr3R 10306950 10306980 chr3R 10312209 10312239 8 5259 44.0 9.5 26.8 0.3 5289 chr3R 10306950 exon CG43143 + chr3R 10309594 exon CG6293 - chr3R 10312239 3` UTR Bruce - chr3R_8_10305001 chr3R_10305001 RAL-176 1482 chr3R 10394072 10394097 chr3R 10394171 10394195 5 99 1.5 0.5 1.0 2.5 123 chr3R 10394072 intron cwo + chr3R 10394134 intron cwo + chr3R 10394195 intron cwo + chr3R_5_10390001 chr3R_10390001 RAL-176 1483 chr3R 10430675 10430707 chr3R 10430763 10430796 13 87 5.5 6.5 6.0 1.9 121 chr3R 10430675 intergenic not near genes chr3R 10430736 intergenic not near genes chr3R 10430796 intergenic not near genes chr3R_13_10430001 chr3R_10430001 RAL-176 1484 chr3R 10596626 10596648 chr3R 10596702 10596711 11 73 3.5 3.5 3.5 2.4 85 chr3R 10596626 intron hth - chr3R 10596668 intron hth - chr3R 10596711 intron hth - chr3R_11_10595001 chr3R_10595001 RAL-176 1485 chr3R 10651820 10651839 chr3R 10651919 10651938 7 99 3.0 3.5 3.2 1.7 118 chr3R 10651820 intergenic not near genes chr3R 10651879 intergenic not near genes chr3R 10651938 intergenic not near genes chr3R_7_10650001 chr3R_10650001 RAL-176 1486 chr3R 10691552 10691581 chr3R 10691642 10691671 18 89 5.0 7.5 6.2 2.5 119 chr3R 10691552 intron Skeletor + chr3R 10691612 intron Skeletor + chr3R 10691671 intron Skeletor + chr3R_18_10690001 chr3R_10690001 RAL-176 1487 chr3R 10723765 10723794 chr3R 10723857 10723886 13 90 1.0 0.5 0.8 7.2 121 chr3R 10723765 intergenic not near genes chr3R 10723826 intergenic not near genes chr3R 10723886 intergenic not near genes chr3R_13_10720001 chr3R_10720001 RAL-176 1488 chr3R 10727642 10727679 chr3R 10727722 10727758 18 80 4.5 5.0 4.8 3.1 116 chr3R 10727642 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727758 intergenic not near genes chr3R_18_10725001 chr3R_10725001 RAL-176 1489 chr3R 10732325 10732342 chr3R 10733197 10733214 5 872 2.0 5.0 3.5 1.1 889 chr3R 10732325 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733214 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-176 1490 chr3R 10868590 10868624 chr3R 10868668 10868698 10 68 4.5 5.0 4.8 1.7 108 chr3R 10868590 5` UTR SelR - chr3R 10868644 intergenic SelR -,Tsp86D + chr3R 10868698 intergenic Tsp86D +,SelR - chr3R_10_10865001 chr3R_10865001 RAL-176 1491 chr3R 10904912 10904935 chr3R 10905116 10905135 6 200 4.0 2.0 3.0 1.5 223 chr3R 10904912 intergenic not near genes chr3R 10905024 intergenic not near genes chr3R 10905135 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-176 1492 chr3R 10919684 10919717 chr3R 10919761 10919795 11 77 5.0 0.5 2.8 2.9 111 chr3R 10919684 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919795 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-176 1493 chr3R 10920043 10920078 chr3R 10920121 10920152 13 78 2.0 6.0 4.0 2.6 109 chr3R 10920043 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920152 intergenic not near genes chr3R_13_10920001 chr3R_10920001 RAL-176 1494 chr3R 10957870 10957885 chr3R 10963254 10963258 Rt1c 4 5383 5.0 9.5 7.2 0.5 5388 chr3R 10957870 intergenic not near genes chr3R 10960564 intergenic not near genes chr3R 10963258 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-176 1495 chr3R 10971489 10971513 chr3R 10971573 10971604 10 88 5.0 5.0 5.0 1.7 115 chr3R 10971489 intergenic not near genes chr3R 10971546 intergenic not near genes chr3R 10971604 intergenic not near genes chr3R_10_10970001 chr3R_10970001 RAL-176 1496 chr3R 11043095 11043125 chr3R 11043201 11043231 21 104 4.0 8.0 6.0 3.0 136 chr3R 11043095 intron CG34114 + chr3R 11043163 intron CG34114 + chr3R 11043231 intron CG34114 + chr3R_21_11040001 chr3R_11040001 RAL-176 1497 chr3R 11056896 11056903 chr3R 11056974 11056981 4 78 3.5 0.0 1.8 1.4 85 chr3R 11056896 intergenic not near genes chr3R 11056938 intergenic not near genes chr3R 11056981 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-176 1498 chr3R 11087433 11087467 chr3R 11087509 11087543 15 75 5.0 3.0 4.0 3.0 110 chr3R 11087433 intergenic not near genes chr3R 11087488 intergenic not near genes chr3R 11087543 intergenic not near genes chr3R_15_11085001 chr3R_11085001 RAL-176 1499 chr3R 11099659 11099689 chr3R 11099791 11099820 15 130 4.5 6.0 5.2 2.4 161 chr3R 11099659 intergenic not near genes chr3R 11099740 intergenic not near genes chr3R 11099820 intergenic not near genes chr3R_15_11095001 chr3R_11095001 RAL-176 1500 chr3R 11102324 11102355 chr3R 11102405 11102436 16 80 8.0 8.5 8.2 1.7 112 chr3R 11102324 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_16_11100001 chr3R_11100001 RAL-176 1501 chr3R 11151127 11151151 chr3R 11151322 11151346 8 194 2.0 6.0 4.0 1.6 219 chr3R 11151127 3` UTR Ugt86Di - chr3R 11151236 3` UTR Ugt86Di - chr3R 11151346 3` UTR Ugt86Di - chr3R_8_11150001 chr3R_11150001 RAL-176 1502 chr3R 11197986 11198017 chr3R 11198085 11198116 8 98 1.5 2.0 1.8 2.9 130 chr3R 11197986 intron cu + chr3R 11198051 intron cu + chr3R 11198116 intron cu + chr3R_8_11195001 chr3R_11195001 RAL-176 1503 chr3R 11220276 11220311 chr3R 11220395 11220430 7 119 7.5 2.0 4.8 1.2 154 chr3R 11220276 3` UTR CG6693 - chr3R 11220353 3` UTR CG6693 - chr3R 11220430 3` UTR CG6693 - chr3R_7_11220001 chr3R_11220001 RAL-176 1504 chr3R 11307189 11307211 chr3R 11307276 11307298 4 87 10.0 4.0 7.0 0.5 109 chr3R 11307189 intergenic not near genes chr3R 11307244 intergenic not near genes chr3R 11307298 intergenic not near genes chr3R_4_11305001 chr3R_11305001 RAL-176 1505 chr3R 11342541 11342573 chr3R 11342617 11342649 12 76 7.5 3.0 5.2 1.9 108 chr3R 11342541 intron pros + chr3R 11342595 intron pros + chr3R 11342649 intron pros + chr3R_12_11340001 chr3R_11340001 RAL-176 1506 chr3R 11379234 11379263 chr3R 11388389 11388417 roo 8 9155 3.0 4.0 3.5 1.8 9183 chr3R 11379234 intron pros + chr3R 11383826 intron pros + chr3R 11388417 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-176 1507 chr3R 11404953 11404970 chr3R 11405025 11405048 4 77 5.0 6.0 5.5 0.6 95 chr3R 11404953 3` UTR pros + chr3R 11405000 3` UTR pros + chr3R 11405048 3` UTR pros + chr3R_4_11400001 chr3R_11400001 RAL-176 1508 chr3R 11442338 11442369 chr3R 11442523 11442526 16 180 13.5 5.5 9.5 1.5 188 chr3R 11442338 intron,intron sals -,CG17230 + chr3R 11442432 intron,intron sals -,CG17230 + chr3R 11442526 intron,intron sals -,CG17230 + chr3R_16_11440001 chr3R_11440001 RAL-176 1509 chr3R 11518811 11518846 chr3R 11518902 11518937 15 91 4.0 4.5 4.2 2.9 126 chr3R 11518811 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518937 intergenic not near genes chr3R_15_11515001 chr3R_11515001 RAL-176 1510 chr3R 11664793 11664815 chr3R 11664885 11664906 12 91 1.5 8.0 4.8 2.1 113 chr3R 11664793 intron CG42327 + chr3R 11664850 intron CG42327 + chr3R 11664906 intron CG42327 + chr3R_12_11660001 chr3R_11660001 RAL-176 1511 chr3R 11694725 11694742 chr3R 11694818 11694835 6 93 2.0 1.5 1.8 2.1 110 chr3R 11694725 intergenic Fer3 - chr3R 11694780 intergenic Fer3 - chr3R 11694835 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-176 1512 chr3R 11734163 11734189 chr3R 11734279 11734308 21 116 6.5 7.5 7.0 2.6 145 chr3R 11734163 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734308 intergenic not near genes chr3R_21_11730001 chr3R_11730001 RAL-176 1513 chr3R 11763937 11763942 chr3R 11764002 11764021 4 72 5.5 8.0 6.8 0.5 84 chr3R 11763937 5` UTR Lk6 - chr3R 11763979 5` UTR Lk6 - chr3R 11764021 5` UTR Lk6 - chr3R_4_11760001 chr3R_11760001 RAL-176 1514 chr3R 11841059 11841099 chr3R 11846250 11846290 BS 13 5190 3.5 3.0 3.2 3.1 5231 chr3R 11841059 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846290 intron CG6959 - chr3R_13_11840001 chr3R_11840001 RAL-176 1515 chr3R 11853438 11853472 chr3R 11853587 11853619 8 147 0.0 5.0 2.5 2.3 181 chr3R 11853438 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853619 intron CG6959 - chr3R_8_11850001 chr3R_11850001 RAL-176 1516 chr3R 11853769 11853803 chr3R 11853872 11853908 18 104 3.0 3.5 3.2 4.3 139 chr3R 11853769 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853908 intron CG6959 - chr3R_18_11850001 chr3R_11850001 RAL-176 1517 chr3R 11919302 11919337 chr3R 11919390 11919394 12 80 6.0 3.0 4.5 2.2 92 chr3R 11919302 intron Cad87A - chr3R 11919348 intron Cad87A - chr3R 11919394 intron Cad87A - chr3R_12_11915001 chr3R_11915001 RAL-176 1518 chr3R 11945386 11945406 chr3R 11945483 11945504 7 98 3.0 5.5 4.2 1.3 118 chr3R 11945386 intron Cad87A - chr3R 11945445 intron Cad87A - chr3R 11945504 intron Cad87A - chr3R_7_11945001 chr3R_11945001 RAL-176 1519 chr3R 11981390 11981394 chr3R 11983806 11983810 7 2414 7.5 21.0 14.2 0.5 2420 chr3R 11981390 exon CG12224 - chr3R 11982600 5` UTR CG12224 - chr3R 11983810 exon CG3397 - chr3R_7_11980001 chr3R_11980001 RAL-176 1520 chr3R 11994992 11995025 chr3R 11995071 11995105 23 75 12.5 5.5 9.0 2.3 113 chr3R 11994992 exon Tk - chr3R 11995048 exon Tk - chr3R 11995105 exon Tk - chr3R_23_11995001 chr3R_11995001 RAL-176 1521 chr3R 12022893 12022907 chr3R 12025065 12025070 pogo 4 2172 2.5 3.0 2.8 1.1 2177 chr3R 12022893 intergenic not near genes chr3R 12023982 intergenic not near genes chr3R 12025070 intergenic not near genes chr3R_4_12020001 chr3R_12020001 RAL-176 1522 chr3R 12081999 12082029 chr3R 12082073 12082102 16 75 4.0 4.0 4.0 3.2 103 chr3R 12081999 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082102 intron CG14741 - chr3R_16_12080001 chr3R_12080001 RAL-176 1523 chr3R 12111900 12111923 chr3R 12111974 12111999 18 75 0.0 6.5 3.2 4.3 99 chr3R 12111900 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111999 intergenic not near genes chr3R_18_12110001 chr3R_12110001 RAL-176 1524 chr3R 12182963 12182988 chr3R 12183047 12183048 6 80 3.5 8.5 6.0 0.9 85 chr3R 12182963 intergenic not near genes chr3R 12183006 intergenic not near genes chr3R 12183048 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-176 1525 chr3R 12246766 12246793 chr3R 12246850 12246877 17 83 6.0 6.0 6.0 2.4 111 chr3R 12246766 intergenic not near genes chr3R 12246822 intergenic not near genes chr3R 12246877 intergenic not near genes chr3R_17_12245001 chr3R_12245001 RAL-176 1526 chr3R 12328170 12328184 chr3R 12328281 12328295 6 111 3.5 0.5 2.0 2.0 125 chr3R 12328170 intergenic CR45584 + chr3R 12328232 intergenic CR45584 + chr3R 12328295 intergenic CR45584 + chr3R_6_12325001 chr3R_12325001 RAL-176 1527 chr3R 12388878 12388884 chr3R 12388965 12388971 5 86 16.5 8.5 12.5 0.4 93 chr3R 12388878 intron CG34402 + chr3R 12388924 intron CG34402 + chr3R 12388971 intron CG34402 + chr3R_5_12385001 chr3R_12385001 RAL-176 1528 chr3R 12388885 12388908 chr3R 12388963 12388994 21 85 8.5 8.0 8.2 2.3 109 chr3R 12388885 intron CG34402 + chr3R 12388940 intron CG34402 + chr3R 12388994 intron CG34402 + chr3R_21_12385001 chr3R_12385001 RAL-176 1529 chr3R 12568494 12568527 chr3R 12568573 12568607 13 79 4.0 4.0 4.0 2.6 113 chr3R 12568494 intron Octbeta2R - chr3R 12568550 intron Octbeta2R - chr3R 12568607 intron Octbeta2R - chr3R_13_12565001 chr3R_12565001 RAL-176 1530 chr3R 12599373 12599407 chr3R 12599453 12599481 16 80 4.0 4.5 4.2 3.1 108 chr3R 12599373 intergenic not near genes chr3R 12599427 intergenic not near genes chr3R 12599481 intergenic not near genes chr3R_16_12595001 chr3R_12595001 RAL-176 1531 chr3R 12819032 12819051 chr3R 12819115 12819134 9 82 4.5 5.5 5.0 1.5 102 chr3R 12819032 intergenic not near genes chr3R 12819083 intergenic not near genes chr3R 12819134 intergenic not near genes chr3R_9_12815001 chr3R_12815001 RAL-176 1532 chr3R 12872744 12872774 chr3R 12872842 12872873 7 99 2.0 1.5 1.8 2.5 129 chr3R 12872744 intergenic not near genes chr3R 12872808 intergenic not near genes chr3R 12872873 intergenic not near genes chr3R_7_12870001 chr3R_12870001 RAL-176 1533 chr3R 12876954 12876985 chr3R 12877037 12877068 8 82 2.0 3.0 2.5 2.3 114 chr3R 12876954 intergenic not near genes chr3R 12877011 intergenic not near genes chr3R 12877068 intergenic not near genes chr3R_8_12875001 chr3R_12875001 RAL-176 1534 chr3R 12920154 12920168 chr3R 12925357 12925371 copia 9 5200 8.0 8.0 8.0 1.0 5217 chr3R 12920154 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925371 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-176 1535 chr3R 12920171 12920182 chr3R 12925355 12925385 copia 6 5198 3.5 7.0 5.2 1.0 5214 chr3R 12920171 intron beat-Vb + chr3R 12922778 intron beat-Vb + chr3R 12925385 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-176 1536 chr3R 12929291 12929302 chr3R 12929375 12929385 7 87 3.0 4.5 3.8 1.5 94 chr3R 12929291 intron beat-Vb + chr3R 12929338 intron beat-Vb + chr3R 12929385 intron beat-Vb + chr3R_7_12925001 chr3R_12925001 RAL-176 1537 chr3R 12972555 12972582 chr3R 12972694 12972721 13 139 6.0 3.0 4.5 2.4 166 chr3R 12972555 intron CG7381 - chr3R 12972638 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_13_12970001 chr3R_12970001 RAL-176 1538 chr3R 13045790 13045802 chr3R 13053026 13053038 15 7237 94.5 56.0 75.2 0.2 7248 chr3R 13045790 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053038 intron pic + chr3R_15_13045001 chr3R_13045001 RAL-176 1539 chr3R 13104419 13104419 chr3R 21907534 21907536 18 8803116 48.5 42.0 45.2 0.4 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_18_17505001 chr3R_17505001 RAL-176 1540 chr3R 13104420 13104420 chr3R 21907534 21907536 21 8803115 49.0 42.0 45.5 0.5 8803116 chr3R 13104420 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_21_17505001 chr3R_17505001 RAL-176 1541 chr3R 13143032 13143057 chr3R 13148609 13148634 mdg3 12 5576 8.5 5.0 6.8 1.5 5602 chr3R 13143032 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145833 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148634 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_12_13145001 chr3R_13145001 RAL-176 1542 chr3R 13143058 13143063 chr3R 13148635 13148638 mdg3 6 5577 7.5 12.5 10.0 0.5 5580 chr3R 13143058 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145848 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148638 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-176 1543 chr3R 13222799 13222812 chr3R 13222869 13222893 7 79 5.5 5.0 5.2 1.1 94 chr3R 13222799 intergenic Ace - chr3R 13222846 intergenic Ace - chr3R 13222893 intergenic Ace - chr3R_7_13220001 chr3R_13220001 RAL-176 1544 chr3R 13274214 13274236 chr3R 13274289 13274312 10 77 8.0 0.0 4.0 2.0 98 chr3R 13274214 intergenic not near genes chr3R 13274263 intergenic not near genes chr3R 13274312 intergenic not near genes chr3R_10_13270001 chr3R_13270001 RAL-176 1545 chr3R 13314109 13314131 chr3R 13318897 13318919 Doc 4 4787 0.0 5.0 2.5 1.1 4810 chr3R 13314109 intergenic not near genes chr3R 13316514 intergenic not near genes chr3R 13318919 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-176 1546 chr3R 13365017 13365029 chr3R 13365113 13365128 7 98 3.5 5.0 4.2 1.3 111 chr3R 13365017 intron,5` UTR poly -,Dic1 + chr3R 13365072 intron,5` UTR poly -,Dic1 + chr3R 13365128 intron,5` UTR poly -,Dic1 + chr3R_7_13365001 chr3R_13365001 RAL-176 1547 chr3R 13376271 13376301 chr3R 13376360 13376368 12 80 0.5 4.5 2.5 3.4 97 chr3R 13376271 intron CG9813 - chr3R 13376320 intron CG9813 - chr3R 13376368 intron CG9813 - chr3R_12_13375001 chr3R_13375001 RAL-176 1548 chr3R 13496632 13496642 chr3R 13496708 13496721 8 78 8.5 0.0 4.2 1.5 89 chr3R 13496632 intergenic not near genes chr3R 13496676 intergenic not near genes chr3R 13496721 intergenic not near genes chr3R_8_13495001 chr3R_13495001 RAL-176 1549 chr3R 13505853 13505865 chr3R 13505929 13505938 6 75 9.0 5.5 7.2 0.7 85 chr3R 13505853 intergenic not near genes chr3R 13505896 intergenic not near genes chr3R 13505938 intergenic not near genes chr3R_6_13505001 chr3R_13505001 RAL-176 1550 chr3R 13540494 13540523 chr3R 13540565 13540599 10 73 2.0 4.5 3.2 2.4 105 chr3R 13540494 intergenic not near genes chr3R 13540546 intergenic not near genes chr3R 13540599 intergenic not near genes chr3R_10_13540001 chr3R_13540001 RAL-176 1551 chr3R 13571355 13571384 chr3R 13571455 13571481 10 97 10.5 6.0 8.2 1.1 126 chr3R 13571355 intergenic not near genes chr3R 13571418 intergenic not near genes chr3R 13571481 intergenic not near genes chr3R_10_13570001 chr3R_13570001 RAL-176 1552 chr3R 13600781 13600811 chr3R 13600876 13600912 19 100 5.5 6.0 5.8 2.8 131 chr3R 13600781 intergenic not near genes chr3R 13600846 intergenic not near genes chr3R 13600912 intergenic not near genes chr3R_19_13600001 chr3R_13600001 RAL-176 1553 chr3R 13603061 13603077 chr3R 13603152 13603168 7 91 3.5 5.0 4.2 1.3 107 chr3R 13603061 intergenic not near genes chr3R 13603114 intergenic not near genes chr3R 13603168 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-176 1554 chr3R 13607175 13607208 chr3R 13607280 13607313 15 104 11.0 8.0 9.5 1.4 138 chr3R 13607175 3` UTR CG9759 - chr3R 13607244 3` UTR CG9759 - chr3R 13607313 3` UTR CG9759 - chr3R_15_13605001 chr3R_13605001 RAL-176 1555 chr3R 13630742 13630762 chr3R 13630890 13630909 6 148 0.0 5.0 2.5 1.7 167 chr3R 13630742 intergenic CR45594 - chr3R 13630826 intergenic CR45594 - chr3R 13630909 3` UTR CR45594 - chr3R_6_13630001 chr3R_13630001 RAL-176 1556 chr3R 13669090 13669122 chr3R 13669186 13669217 21 94 2.5 3.5 3.0 5.2 127 chr3R 13669090 intron Task6 - chr3R 13669154 intron Task6 - chr3R 13669217 intron Task6 - chr3R_21_13665001 chr3R_13665001 RAL-176 1557 chr3R 13672945 13672972 chr3R 13673023 13673050 8 78 3.5 4.5 4.0 1.6 105 chr3R 13672945 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673050 intron Task6 - chr3R_8_13670001 chr3R_13670001 RAL-176 1558 chr3R 13693028 13693028 chr3R 21907534 21907536 80 8214507 17.0 42.0 29.5 2.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_80_17800001 chr3R_17800001 RAL-176 1559 chr3R 13700144 13700153 chr3R 13700219 13700231 10 77 8.0 5.5 6.8 1.3 87 chr3R 13700144 5` UTR f-cup - chr3R 13700188 intron f-cup - chr3R 13700231 intron f-cup - chr3R_10_13700001 chr3R_13700001 RAL-176 1560 chr3R 13700154 13700170 chr3R 13700216 13700246 13 75 4.5 5.0 4.8 2.2 92 chr3R 13700154 intron f-cup - chr3R 13700200 intron f-cup - chr3R 13700246 intron f-cup - chr3R_13_13700001 chr3R_13700001 RAL-176 1561 chr3R 11988055 11988060 chr3R 13731610 13731615 4 1743555 17.0 8.0 12.5 0.3 1743560 chr3R 11988055 intron mfas - chr3R 12859835 intergenic not near genes chr3R 13731615 intron CG34383 + chr3R_4_12855001 chr3R_12855001 RAL-176 1562 chr3R 13782053 13782087 chr3R 13782134 13782168 6 81 5.0 4.0 4.5 1.1 115 chr3R 13782053 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782168 intergenic CG9286 +,Dip-B + chr3R_6_13780001 chr3R_13780001 RAL-176 1563 chr3R 13975380 13975403 chr3R 13975457 13975483 8 79 0.5 3.5 2.0 2.7 103 chr3R 13975380 intron rdx - chr3R 13975432 intron rdx - chr3R 13975483 intron rdx - chr3R_8_13975001 chr3R_13975001 RAL-176 1564 chr3R 13994305 13994333 chr3R 13994560 13994587 6 254 2.0 1.5 1.8 2.1 282 chr3R 13994305 intron rdx - chr3R 13994446 intron rdx - chr3R 13994587 intron rdx - chr3R_6_13990001 chr3R_13990001 RAL-176 1565 chr3R 14049016 14049048 chr3R 14049096 14049128 16 79 1.5 7.0 4.2 3.1 112 chr3R 14049016 intergenic not near genes chr3R 14049072 intergenic not near genes chr3R 14049128 intergenic not near genes chr3R_16_14045001 chr3R_14045001 RAL-176 1566 chr3R 14058125 14058151 chr3R 14058245 14058271 4 120 2.0 1.0 1.5 1.6 146 chr3R 14058125 intron foxo + chr3R 14058198 intron foxo + chr3R 14058271 intron foxo + chr3R_4_14055001 chr3R_14055001 RAL-176 1567 chr3R 14067142 14067151 chr3R 14067221 14067230 7 79 6.5 2.5 4.5 1.3 88 chr3R 14067142 exon foxo + chr3R 14067186 intron foxo + chr3R 14067230 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-176 1568 chr3R 14161451 14161489 chr3R 14161542 14161580 21 90 3.0 4.0 3.5 4.7 129 chr3R 14161451 intergenic not near genes chr3R 14161516 intergenic not near genes chr3R 14161580 intergenic not near genes chr3R_21_14160001 chr3R_14160001 RAL-176 1569 chr3R 14180810 14180835 chr3R 14185575 14185600 F-element 6 4764 4.0 3.0 3.5 1.3 4790 chr3R 14180810 intron Dop1R1 - chr3R 14183205 intron Dop1R1 - chr3R 14185600 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-176 1570 chr3R 14246401 14246414 chr3R 14247892 14247910 jockey 7 1494 10.0 8.0 9.0 0.7 1509 chr3R 14246401 intergenic not near genes chr3R 14247156 intergenic not near genes chr3R 14247910 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-176 1571 chr3R 14278420 14278450 chr3R 14278502 14278532 11 82 1.0 3.5 2.2 3.4 112 chr3R 14278420 intron trx - chr3R 14278476 intron trx - chr3R 14278532 intron trx - chr3R_11_14275001 chr3R_14275001 RAL-176 1572 chr3R 14319061 14319093 chr3R 14319143 14319168 13 81 5.5 2.0 3.8 2.7 107 chr3R 14319061 3` UTR pr-set7 + chr3R 14319114 3` UTR pr-set7 + chr3R 14319168 3` UTR pr-set7 + chr3R_13_14315001 chr3R_14315001 RAL-176 1573 chr3R 14356602 14356616 chr3R 14356669 14356670 10 79 5.0 8.0 6.5 1.3 68 chr3R 14356602 intron NK7.1 - chr3R 14356636 intron NK7.1 - chr3R 14356670 intron NK7.1 - chr3R_10_14355001 chr3R_14355001 RAL-176 1574 chr3R 14365739 14365751 chr3R 14365826 14365839 5 88 3.0 0.0 1.5 2.0 100 chr3R 14365739 intron NK7.1 - chr3R 14365789 intron NK7.1 - chr3R 14365839 intron NK7.1 - chr3R_5_14365001 chr3R_14365001 RAL-176 1575 chr3R 14384633 14384642 chr3R 14384700 14384732 7 82 1.0 0.0 0.5 4.7 99 chr3R 14384633 intergenic not near genes chr3R 14384682 intergenic not near genes chr3R 14384732 intergenic not near genes chr3R_7_14380001 chr3R_14380001 RAL-176 1576 chr3R 14527403 14527411 chr3R 14527478 14527488 5 77 13.0 8.5 10.8 0.4 85 chr3R 14527403 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527488 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-176 1577 chr3R 14543598 14543620 chr3R 14543678 14543700 4 80 8.0 0.0 4.0 0.8 102 chr3R 14543598 intron Pde6 - chr3R 14543649 intron Pde6 - chr3R 14543700 intron Pde6 - chr3R_4_14540001 chr3R_14540001 RAL-176 1578 chr3R 14546040 14546072 chr3R 14546115 14546149 8 74 3.0 2.0 2.5 2.3 109 chr3R 14546040 intron Pde6 - chr3R 14546094 intron Pde6 - chr3R 14546149 intron Pde6 - chr3R_8_14545001 chr3R_14545001 RAL-176 1579 chr3R 14565695 14565729 chr3R 14565798 14565832 32 103 5.5 13.0 9.2 3.1 137 chr3R 14565695 intergenic CG14852 + chr3R 14565764 intergenic CG14852 + chr3R 14565832 intergenic CG14852 + chr3R_32_14565001 chr3R_14565001 RAL-176 1580 chr3R 14704385 14704417 chr3R 14704462 14704494 12 76 3.5 7.0 5.2 1.9 109 chr3R 14704385 intron kibra - chr3R 14704440 intron kibra - chr3R 14704494 intron kibra - chr3R_12_14700001 chr3R_14700001 RAL-176 1581 chr3R 14722024 14722055 chr3R 14722141 14722171 8 117 1.0 4.5 2.8 2.1 147 chr3R 14722024 intron kibra - chr3R 14722098 intron kibra - chr3R 14722171 intron kibra - chr3R_8_14720001 chr3R_14720001 RAL-176 1582 chr3R 14756639 14756659 chr3R 14756789 14756809 7 150 2.5 7.0 4.8 1.2 170 chr3R 14756639 intron jvl + chr3R 14756724 intron jvl + chr3R 14756809 intron jvl + chr3R_7_14755001 chr3R_14755001 RAL-176 1583 chr3R 14898478 14898505 chr3R 14898598 14898625 16 120 3.5 4.5 4.0 3.2 147 chr3R 14898478 intergenic Nup93-2 -,CG3817 + chr3R 14898552 intergenic Nup93-2 -,CG3817 + chr3R 14898625 intergenic CG3817 +,Nup93-2 - chr3R_16_14895001 chr3R_14895001 RAL-176 1584 chr3R 14927238 14927273 chr3R 14927336 14927371 11 98 5.5 4.0 4.8 1.9 133 chr3R 14927238 intergenic not near genes chr3R 14927304 intergenic not near genes chr3R 14927371 intergenic not near genes chr3R_11_14925001 chr3R_14925001 RAL-176 1585 chr3R 14954808 14954839 chr3R 14955020 14955051 10 212 3.0 2.5 2.8 2.6 243 chr3R 14954808 intergenic not near genes chr3R 14954930 intergenic not near genes chr3R 14955051 intergenic not near genes chr3R_10_14950001 chr3R_14950001 RAL-176 1586 chr3R 14994589 14994617 chr3R 14994678 14994705 15 84 4.0 4.0 4.0 3.0 116 chr3R 14994589 intergenic not near genes chr3R 14994647 intergenic not near genes chr3R 14994705 intergenic not near genes chr3R_15_14990001 chr3R_14990001 RAL-176 1587 chr3R 15059468 15059480 chr3R 15059555 15059567 7 87 0.0 12.5 6.2 1.0 99 chr3R 15059468 intron dpr9 - chr3R 15059518 intron dpr9 - chr3R 15059567 intron dpr9 - chr3R_7_15055001 chr3R_15055001 RAL-176 1588 chr3R 15088095 15088101 chr3R 15088193 15088199 5 98 3.5 2.5 3.0 1.2 104 chr3R 15088095 intron CG6966 - chr3R 15088147 intron CG6966 - chr3R 15088199 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-176 1589 chr3R 15132062 15132082 chr3R 15135119 15135141 Juan 9 3059 7.5 4.5 6.0 1.3 3079 chr3R 15132062 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135141 3` UTR CG6912 - chr3R_9_15130001 chr3R_15130001 RAL-176 1590 chr3R 15160218 15160251 chr3R 15160332 15160364 11 112 2.5 4.5 3.5 2.4 146 chr3R 15160218 intron Gyc88E + chr3R 15160291 intron Gyc88E + chr3R 15160364 intron Gyc88E + chr3R_11_15160001 chr3R_15160001 RAL-176 1591 chr3R 15162551 15162562 chr3R 15167317 15167326 F-element 8 4767 3.5 0.0 1.8 2.9 4775 chr3R 15162551 intron Gyc88E + chr3R 15164938 intron Gyc88E + chr3R 15167326 intron Gyc88E + chr3R_8_15160001 chr3R_15160001 RAL-176 1592 chr3R 15278821 15278855 chr3R 15278908 15278927 16 86 2.5 6.5 4.5 2.9 106 chr3R 15278821 intergenic l(3)neo43 - chr3R 15278874 intergenic l(3)neo43 - chr3R 15278927 intergenic l(3)neo43 - chr3R_16_15275001 chr3R_15275001 RAL-176 1593 chr3R 15286987 15286988 chr3R 21907534 21907536 12 6620547 28.0 42.0 35.0 0.3 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_12_18595001 chr3R_18595001 RAL-176 1594 chr3R 15302233 15302244 chr3R 15302319 15302327 5 85 5.0 14.5 9.8 0.5 94 chr3R 15302233 intron Tm1 + chr3R 15302280 intron Tm1 + chr3R 15302327 intron Tm1 + chr3R_5_15300001 chr3R_15300001 RAL-176 1595 chr3R 15416252 15416285 chr3R 15416329 15416331 25 77 4.5 15.5 10.0 2.3 79 chr3R 15416252 3` UTR Atx2 + chr3R 15416292 3` UTR Atx2 + chr3R 15416331 3` UTR Atx2 + chr3R_25_15415001 chr3R_15415001 RAL-176 1596 chr3R 15594654 15594668 chr3R 15594737 15594751 7 83 0.0 2.5 1.2 3.2 97 chr3R 15594654 intergenic not near genes chr3R 15594702 intergenic not near genes chr3R 15594751 intergenic not near genes chr3R_7_15590001 chr3R_15590001 RAL-176 1597 chr3R 15601163 15601196 chr3R 15608685 15608718 412 9 7522 3.5 5.5 4.5 1.6 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-176 1598 chr3R 15646790 15646799 chr3R 15646873 15646881 6 82 2.5 3.5 3.0 1.5 91 chr3R 15646790 intergenic not near genes chr3R 15646836 intergenic not near genes chr3R 15646881 intergenic not near genes chr3R_6_15645001 chr3R_15645001 RAL-176 1599 chr3R 15891665 15891687 chr3R 15892057 15892078 12 388 3.0 5.0 4.0 2.4 413 chr3R 15891665 intron CG14877 - chr3R 15891872 intron CG14877 - chr3R 15892078 intron CG14877 - chr3R_12_15890001 chr3R_15890001 RAL-176 1600 chr3R 15924201 15924213 chr3R 15924290 15924302 6 88 9.0 7.5 8.2 0.7 101 chr3R 15924201 intron CG4221 + chr3R 15924252 intron CG4221 + chr3R 15924302 intron CG4221 + chr3R_6_15920001 chr3R_15920001 RAL-176 1601 chr3R 15924218 15924227 chr3R 15924282 15924316 9 85 5.5 6.5 6.0 1.3 98 chr3R 15924218 intron CG4221 + chr3R 15924267 intron CG4221 + chr3R 15924316 intron CG4221 + chr3R_9_15920001 chr3R_15920001 RAL-176 1602 chr3R 16128440 16128468 chr3R 16128525 16128553 13 83 3.0 7.5 5.2 2.1 113 chr3R 16128440 intron Sb + chr3R 16128496 intron Sb + chr3R 16128553 intron Sb + chr3R_13_16125001 chr3R_16125001 RAL-176 1603 chr3R 16246522 16246555 chr3R 16246598 16246631 9 76 0.0 5.5 2.8 2.4 109 chr3R 16246522 intron tara + chr3R 16246576 intron tara + chr3R 16246631 intron tara + chr3R_9_16245001 chr3R_16245001 RAL-176 1604 chr3R 16334002 16334034 chr3R 16334304 16334335 15 302 6.5 3.5 5.0 2.5 333 chr3R 16334002 intron Sulf1 - chr3R 16334168 intron Sulf1 - chr3R 16334335 intron Sulf1 - chr3R_15_16330001 chr3R_16330001 RAL-176 1605 chr3R 16472582 16472595 chr3R 16472655 16472671 5 73 8.0 6.0 7.0 0.6 89 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472671 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-176 1606 chr3R 16508587 16508615 chr3R 16508671 16508700 12 83 4.5 4.5 4.5 2.2 113 chr3R 16508587 intron CG42342 + chr3R 16508644 intron CG42342 + chr3R 16508700 intron CG42342 + chr3R_12_16505001 chr3R_16505001 RAL-176 1607 chr3R 16582907 16582919 chr3R 16582986 16582998 4 79 4.5 6.0 5.2 0.6 91 chr3R 16582907 intron Scp2 - chr3R 16582952 intron Scp2 - chr3R 16582998 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-176 1608 chr3R 16731930 16732071 chr3R 16732010 16732148 21 78 6.0 8.0 7.0 2.6 218 chr3R 16731930 intron Ubx - chr3R 16732039 intron Ubx - chr3R 16732148 intron Ubx - chr3R_21_16730001 chr3R_16730001 RAL-176 1609 chr3R 16756319 16756354 chr3R 16762510 16762541 diver 16 6190 6.0 2.0 4.0 3.2 6222 chr3R 16756319 intron bxd - chr3R 16759430 intron bxd - chr3R 16762541 intron bxd - chr3R_16_16755001 chr3R_16755001 RAL-176 1610 chr3R 16862047 16862072 chr3R 16862231 16862257 7 183 6.0 4.5 5.2 1.1 210 chr3R 16862047 intron iab-8 - chr3R 16862152 intron iab-8 - chr3R 16862257 intron iab-8 - chr3R_7_16860001 chr3R_16860001 RAL-176 1611 chr3R 17120497 17120529 chr3R 17120722 17120754 8 225 3.5 0.5 2.0 2.7 257 chr3R 17120497 intron,exon cher -,CG34278 + chr3R 17120626 intron,exon cher -,CG34278 + chr3R 17120754 intron,3` UTR cher -,CG34278 + chr3R_8_17120001 chr3R_17120001 RAL-176 1612 chr3R 17155063 17155068 chr3R 17155179 17155184 5 115 21.5 25.5 23.5 0.2 121 chr3R 17155063 exon Mur89F - chr3R 17155124 exon Mur89F - chr3R 17155184 exon Mur89F - chr3R_5_17155001 chr3R_17155001 RAL-176 1613 chr3R 17155069 17155076 chr3R 17155163 17155185 5 109 18.5 18.0 18.2 0.3 116 chr3R 17155069 exon Mur89F - chr3R 17155127 exon Mur89F - chr3R 17155185 exon Mur89F - chr3R_5_17155001 chr3R_17155001 RAL-176 1614 chr3R 17164502 17164524 chr3R 17164634 17164651 8 129 4.0 4.0 4.0 1.6 149 chr3R 17164502 intron Mur89F - chr3R 17164576 intron Mur89F - chr3R 17164651 intron Mur89F - chr3R_8_17160001 chr3R_17160001 RAL-176 1615 chr3R 17223564 17223585 chr3R 17223938 17223959 13 373 4.5 5.5 5.0 2.2 395 chr3R 17223564 intergenic CG31262 - chr3R 17223762 intergenic not near genes chr3R 17223959 intergenic not near genes chr3R_13_17220001 chr3R_17220001 RAL-176 1616 chr3R 17234960 17234985 chr3R 17235100 17235118 17 138 5.0 2.0 3.5 3.8 158 chr3R 17234960 intron beat-IIb - chr3R 17235039 intron beat-IIb - chr3R 17235118 intron beat-IIb - chr3R_17_17235001 chr3R_17235001 RAL-176 1617 chr3R 17250234 17250254 chr3R 17250372 17250393 6 139 2.0 2.5 2.2 1.9 159 chr3R 17250234 intron beat-IIb - chr3R 17250314 intron beat-IIb - chr3R 17250393 intron beat-IIb - chr3R_6_17250001 chr3R_17250001 RAL-176 1618 chr3R 17289474 17289493 chr3R 17289548 17289552 7 83 2.5 3.5 3.0 1.8 78 chr3R 17289474 intergenic not near genes chr3R 17289513 intergenic not near genes chr3R 17289552 intergenic not near genes chr3R_7_17285001 chr3R_17285001 RAL-176 1619 chr3R 17294670 17294702 chr3R 17295098 17295130 BS 16 428 4.0 5.0 4.5 2.9 460 chr3R 17294670 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295130 intergenic not near genes chr3R_16_17290001 chr3R_17290001 RAL-176 1620 chr3R 17312818 17312850 chr3R 17312903 17312924 17 84 2.0 2.0 2.0 5.7 106 chr3R 17312818 intergenic not near genes chr3R 17312871 intergenic not near genes chr3R 17312924 intergenic not near genes chr3R_17_17310001 chr3R_17310001 RAL-176 1621 chr3R 17319052 17319071 chr3R 17319137 17319159 9 88 0.5 1.5 1.0 4.5 107 chr3R 17319052 intergenic not near genes chr3R 17319106 intergenic not near genes chr3R 17319159 intergenic not near genes chr3R_9_17315001 chr3R_17315001 RAL-176 1622 chr3R 17335159 17335186 chr3R 17335234 17335258 15 75 2.0 3.5 2.8 3.9 99 chr3R 17335159 intron beat-IIa - chr3R 17335208 intron beat-IIa - chr3R 17335258 intron beat-IIa - chr3R_15_17335001 chr3R_17335001 RAL-176 1623 chr3R 17346691 17346715 chr3R 17348253 17348266 F-element 5 1560 2.0 3.5 2.8 1.3 1575 chr3R 17346691 intron beat-IIa - chr3R 17347478 intron beat-IIa - chr3R 17348266 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-176 1624 chr3R 17355491 17355522 chr3R 17355569 17355599 10 78 3.5 6.0 4.8 1.7 108 chr3R 17355491 intron beat-IIa - chr3R 17355545 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_10_17355001 chr3R_17355001 RAL-176 1625 chr3R 17366147 17366173 chr3R 17366222 17366240 12 80 5.0 4.0 4.5 2.2 93 chr3R 17366147 intergenic beat-IIa - chr3R 17366194 intergenic beat-IIa - chr3R 17366240 intergenic beat-IIa - chr3R_12_17365001 chr3R_17365001 RAL-176 1626 chr3R 17396677 17396707 chr3R 17396793 17396824 5 116 19.0 19.0 19.0 0.2 147 chr3R 17396677 3` UTR Sur-8 - chr3R 17396750 3` UTR Sur-8 - chr3R 17396824 3` UTR Sur-8 - chr3R_5_17395001 chr3R_17395001 RAL-176 1627 chr3R 17461204 17461223 chr3R 17461286 17461305 9 82 2.0 1.5 1.8 3.2 101 chr3R 17461204 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461305 intergenic not near genes chr3R_9_17460001 chr3R_17460001 RAL-176 1628 chr3R 17463152 17463185 chr3R 17463237 17463270 5 85 2.5 1.5 2.0 1.7 118 chr3R 17463152 intergenic not near genes chr3R 17463211 intergenic not near genes chr3R 17463270 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-176 1629 chr3R 17498850 17498880 chr3R 17498992 17499022 17 142 5.5 8.0 6.8 2.2 172 chr3R 17498850 intron Dscam3 - chr3R 17498936 intron Dscam3 - chr3R 17499022 intron Dscam3 - chr3R_17_17495001 chr3R_17495001 RAL-176 1630 chr3R 17522782 17522805 chr3R 17522914 17522920 15 133 6.5 5.0 5.8 2.2 138 chr3R 17522782 intergenic not near genes chr3R 17522851 intergenic not near genes chr3R 17522920 intergenic not near genes chr3R_15_17520001 chr3R_17520001 RAL-176 1631 chr3R 17524922 17524929 chr3R 17525002 17525008 4 80 0.0 6.5 3.2 1.0 86 chr3R 17524922 intergenic not near genes chr3R 17524965 intergenic not near genes chr3R 17525008 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-176 1632 chr3R 17563501 17563519 chr3R 17563587 17563604 6 84 7.0 9.5 8.2 0.7 103 chr3R 17563501 intron Hmx + chr3R 17563552 intron Hmx + chr3R 17563604 intron Hmx + chr3R_6_17560001 chr3R_17560001 RAL-176 1633 chr3R 17591311 17591325 chr3R 17591721 17591752 F-element 8 426 4.5 1.5 3.0 2.0 441 chr3R 17591311 intergenic not near genes chr3R 17591532 intergenic not near genes chr3R 17591752 intergenic not near genes chr3R_8_17590001 chr3R_17590001 RAL-176 1634 chr3R 17657652 17657661 chr3R 17657803 17657812 INE-1 5 151 0.5 6.0 3.2 1.2 160 chr3R 17657652 intron CG14322 + chr3R 17657732 intron CG14322 + chr3R 17657812 intron CG14322 + chr3R_5_17655001 chr3R_17655001 RAL-176 1635 chr3R 17746601 17746619 chr3R 17746677 17746691 8 75 5.5 2.0 3.8 1.7 90 chr3R 17746601 3` UTR TyrRII + chr3R 17746646 3` UTR TyrRII + chr3R 17746691 3` UTR TyrRII + chr3R_8_17745001 chr3R_17745001 RAL-176 1636 chr3R 17811023 17811054 chr3R 17811110 17811141 13 85 4.5 6.0 5.2 2.1 118 chr3R 17811023 exon CG18012 - chr3R 17811082 5` UTR CG18012 - chr3R 17811141 intergenic CG18012 -,tinc + chr3R_13_17810001 chr3R_17810001 RAL-176 1637 chr3R 17895342 17895377 chr3R 17895431 17895468 5 90 2.5 3.0 2.8 1.3 126 chr3R 17895342 intron Rim - chr3R 17895405 intron Rim - chr3R 17895468 intron Rim - chr3R_5_17895001 chr3R_17895001 RAL-176 1638 chr3R 17925851 17925889 chr3R 17927318 17927356 hobo 19 1464 4.0 11.5 7.8 2.2 1505 chr3R 17925851 intron cpo + chr3R 17926604 intron cpo + chr3R 17927356 intron cpo + chr3R_19_17925001 chr3R_17925001 RAL-176 1639 chr3R 17983213 17983246 chr3R 17983289 17983322 6 74 1.5 0.5 1.0 3.0 109 chr3R 17983213 intron cpo + chr3R 17983268 intron cpo + chr3R 17983322 intron cpo + chr3R_6_17980001 chr3R_17980001 RAL-176 1640 chr3R 18006455 18006463 chr3R 18006526 18006550 7 83 8.0 16.5 12.2 0.5 95 chr3R 18006455 intron cpo + chr3R 18006502 intron cpo + chr3R 18006550 intron cpo + chr3R_7_18005001 chr3R_18005001 RAL-176 1641 chr3R 18041754 18041775 chr3R 18041831 18041852 6 77 0.0 4.0 2.0 2.0 98 chr3R 18041754 intergenic not near genes chr3R 18041803 intergenic not near genes chr3R 18041852 intergenic not near genes chr3R_6_18040001 chr3R_18040001 RAL-176 1642 chr3R 18237565 18237599 chr3R 18237656 18237690 22 90 11.5 6.0 8.8 2.2 125 chr3R 18237565 intron repo + chr3R 18237628 intron repo + chr3R 18237690 intron repo + chr3R_22_18235001 chr3R_18235001 RAL-176 1643 chr3R 18376188 18376211 chr3R 18376297 18376321 7 108 7.0 6.5 6.8 0.9 133 chr3R 18376188 5` UTR CR44946 + chr3R 18376254 5` UTR CR44946 + chr3R 18376321 5` UTR CR44946 + chr3R_7_18375001 chr3R_18375001 RAL-176 1644 chr3R 18442799 18442803 chr3R 18442879 18442882 5 80 21.5 7.0 14.2 0.3 83 chr3R 18442799 intron fru - chr3R 18442840 intron fru - chr3R 18442882 intron fru - chr3R_5_18440001 chr3R_18440001 RAL-176 1645 chr3R 18501596 18501627 chr3R 18501677 18501706 6 81 2.5 4.5 3.5 1.3 110 chr3R 18501596 intron fru - chr3R 18501651 intron fru - chr3R 18501706 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-176 1646 chr3R 18600374 18600399 chr3R 18600557 18600583 19 183 33.0 42.0 37.5 0.5 209 chr3R 18600374 intron,intron qin +,CG14304 - chr3R 18600478 intron,intron qin +,CG14304 - chr3R 18600583 intron,intron qin +,CG14304 - chr3R_19_18600001 chr3R_18600001 RAL-176 1647 chr3R 18606503 18606530 chr3R 18610735 18610762 F-element 6 4231 7.0 3.0 5.0 1.0 4259 chr3R 18606503 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610762 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-176 1648 chr3R 18781695 18781726 chr3R 18781767 18781777 9 72 3.5 4.5 4.0 1.8 82 chr3R 18781695 intron CG7720 - chr3R 18781736 intron CG7720 - chr3R 18781777 intron CG7720 - chr3R_9_18780001 chr3R_18780001 RAL-176 1649 chr3R 18812076 18812104 chr3R 18812153 18812181 29 78 7.0 6.5 6.8 3.7 105 chr3R 18812076 intron CG18208 - chr3R 18812128 intron CG18208 - chr3R 18812181 intron CG18208 - chr3R_29_18810001 chr3R_18810001 RAL-176 1650 chr3R 18860126 18860155 chr3R 18860212 18860240 7 85 3.5 2.5 3.0 1.8 114 chr3R 18860126 intergenic not near genes chr3R 18860183 intergenic not near genes chr3R 18860240 intergenic not near genes chr3R_7_18860001 chr3R_18860001 RAL-176 1651 chr3R 18878028 18878036 chr3R 18878152 18878162 8 126 2.5 7.5 5.0 1.3 134 chr3R 18878028 intergenic not near genes chr3R 18878095 intergenic not near genes chr3R 18878162 intergenic not near genes chr3R_8_18875001 chr3R_18875001 RAL-176 1652 chr3R 19081975 19081991 chr3R 19082053 19082066 9 78 2.0 4.5 3.2 2.1 91 chr3R 19081975 intron cdi - chr3R 19082020 intron cdi - chr3R 19082066 intron cdi - chr3R_9_19080001 chr3R_19080001 RAL-176 1653 chr3R 19140262 19140297 chr3R 19140710 19140745 21 447 8.5 3.0 5.8 3.1 483 chr3R 19140262 3` UTR Ppcs - chr3R 19140504 3` UTR Ppcs - chr3R 19140745 3` UTR Ppcs - chr3R_21_19140001 chr3R_19140001 RAL-176 1654 chr3R 19165920 19165954 chr3R 19166030 19166064 29 110 7.0 5.5 6.2 4.0 144 chr3R 19165920 intron sqz + chr3R 19165992 intron sqz + chr3R 19166064 intron sqz + chr3R_29_19165001 chr3R_19165001 RAL-176 1655 chr3R 19193003 19193012 chr3R 19197290 19197316 F-element 6 4298 3.0 10.5 6.8 0.8 4313 chr3R 19193003 intron CG31475 + chr3R 19195160 intron CG31475 + chr3R 19197316 intron CG31475 + chr3R_6_19195001 chr3R_19195001 RAL-176 1656 chr3R 19205613 19205633 chr3R 19205689 19205712 12 79 2.0 8.0 5.0 2.0 99 chr3R 19205613 intergenic not near genes chr3R 19205662 intergenic not near genes chr3R 19205712 intergenic not near genes chr3R_12_19205001 chr3R_19205001 RAL-176 1657 chr3R 19276931 19276947 chr3R 19277010 19277027 4 80 1.5 2.5 2.0 1.3 96 chr3R 19276931 intergenic not near genes chr3R 19276979 intergenic not near genes chr3R 19277027 intergenic not near genes chr3R_4_19275001 chr3R_19275001 RAL-176 1658 chr3R 19339285 19339301 chr3R 19339368 19339384 7 83 9.0 7.5 8.2 0.8 99 chr3R 19339285 intergenic not near genes chr3R 19339334 intergenic not near genes chr3R 19339384 intergenic not near genes chr3R_7_19335001 chr3R_19335001 RAL-176 1659 chr3R 19340407 19340429 chr3R 19340484 19340506 11 77 6.5 5.0 5.8 1.6 99 chr3R 19340407 intergenic not near genes chr3R 19340456 intergenic not near genes chr3R 19340506 intergenic not near genes chr3R_11_19340001 chr3R_19340001 RAL-176 1660 chr3R 19348649 19348671 chr3R 19348728 19348750 10 78 5.5 3.5 4.5 1.8 101 chr3R 19348649 intergenic not near genes chr3R 19348700 intergenic not near genes chr3R 19348750 intergenic not near genes chr3R_10_19345001 chr3R_19345001 RAL-176 1661 chr3R 19490440 19490468 chr3R 19490527 19490557 15 87 6.0 7.0 6.5 2.0 117 chr3R 19490440 intron,exon Dys +,CG15025 - chr3R 19490498 intron,intron Dys +,CG15025 - chr3R 19490557 intron,intron Dys +,CG15025 - chr3R_15_19490001 chr3R_19490001 RAL-176 1662 chr3R 19555201 19555225 chr3R 19555396 19555424 10 199 6.5 7.0 6.8 1.3 223 chr3R 19555201 intron Dys + chr3R 19555312 intron Dys + chr3R 19555424 intron Dys + chr3R_10_19555001 chr3R_19555001 RAL-176 1663 chr3R 12926011 12926023 chr3R 19583640 19583647 4 6657625 16.5 20.5 18.5 0.2 6657636 chr3R 12926011 intron beat-Vb + chr3R 16254829 intron tara + chr3R 19583647 intron Dys + chr3R_4_16250001 chr3R_16250001 RAL-176 1664 chr3R 19651729 19651757 chr3R 19651805 19651832 27 75 8.5 6.5 7.5 3.2 103 chr3R 19651729 exon CG31219 + chr3R 19651780 exon CG31219 + chr3R 19651832 intron CG31219 + chr3R_27_19650001 chr3R_19650001 RAL-176 1665 chr3R 19658243 19658271 chr3R 19658344 19658372 33 99 8.5 10.0 9.2 3.2 129 chr3R 19658243 intergenic CG6184 - chr3R 19658308 intergenic CG6184 - chr3R 19658372 intergenic not near genes chr3R_33_19655001 chr3R_19655001 RAL-176 1666 chr3R 19681607 19681632 chr3R 19681698 19681723 12 91 2.5 6.0 4.2 2.3 116 chr3R 19681607 intron Naam + chr3R 19681665 intron Naam + chr3R 19681723 intron Naam + chr3R_12_19680001 chr3R_19680001 RAL-176 1667 chr3R 19702320 19702354 chr3R 19702401 19702436 12 81 2.5 3.0 2.8 3.2 116 chr3R 19702320 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702436 intergenic not near genes chr3R_12_19700001 chr3R_19700001 RAL-176 1668 chr3R 19716216 19716249 chr3R 19716291 19716326 13 75 2.5 0.0 1.2 5.9 110 chr3R 19716216 intergenic CG34286 - chr3R 19716271 intergenic CG34286 - chr3R 19716326 intergenic CG34286 - chr3R_13_19715001 chr3R_19715001 RAL-176 1669 chr3R 19783188 19783212 chr3R 19783276 19783300 7 88 1.0 1.0 1.0 3.5 112 chr3R 19783188 intergenic CG11407 +,CG11453 + chr3R 19783244 intergenic CG11407 +,CG11453 + chr3R 19783300 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-176 1670 chr3R 19908279 19908285 chr3R 19908362 19908369 4 84 0.0 4.5 2.2 1.2 90 chr3R 19908279 intron RhoGAP92B + chr3R 19908324 intron RhoGAP92B + chr3R 19908369 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-176 1671 chr3R 19908287 19908301 chr3R 19908357 19908385 4 80 0.0 3.5 1.8 1.4 98 chr3R 19908287 intron RhoGAP92B + chr3R 19908336 intron RhoGAP92B + chr3R 19908385 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-176 1672 chr3R 19955350 19955362 chr3R 19955451 19955463 5 101 1.0 1.0 1.0 2.5 113 chr3R 19955350 intron Hs6st - chr3R 19955406 intron Hs6st - chr3R 19955463 intron Hs6st - chr3R_5_19955001 chr3R_19955001 RAL-176 1673 chr3R 20041125 20041148 chr3R 20041212 20041247 6 95 3.0 2.0 2.5 1.7 122 chr3R 20041125 intron CG17193 - chr3R 20041186 intron CG17193 - chr3R 20041247 intron CG17193 - chr3R_6_20040001 chr3R_20040001 RAL-176 1674 chr3R 20052958 20052975 chr3R 20053085 20053101 6 126 2.5 2.5 2.5 1.7 143 chr3R 20052958 intron CG17193 - chr3R 20053030 intron CG17193 - chr3R 20053101 intron CG17193 - chr3R_6_20050001 chr3R_20050001 RAL-176 1675 chr3R 20145264 20145290 chr3R 20145343 20145370 6 79 6.5 3.5 5.0 1.0 106 chr3R 20145264 intergenic not near genes chr3R 20145317 intergenic not near genes chr3R 20145370 intergenic not near genes chr3R_6_20145001 chr3R_20145001 RAL-176 1676 chr3R 20205560 20205592 chr3R 20205681 20205714 8 122 1.5 2.0 1.8 2.9 154 chr3R 20205560 intron Nlg4 + chr3R 20205637 intron Nlg4 + chr3R 20205714 intron Nlg4 + chr3R_8_20205001 chr3R_20205001 RAL-176 1677 chr3R 20218564 20218586 chr3R 20218824 20218846 10 259 5.5 11.5 8.5 1.1 282 chr3R 20218564 intron Nlg4 + chr3R 20218705 intron Nlg4 + chr3R 20218846 intron Nlg4 + chr3R_10_20215001 chr3R_20215001 RAL-176 1678 chr3R 20256848 20256863 chr3R 20256926 20256937 4 77 0.0 3.0 1.5 1.6 89 chr3R 20256848 intron cic + chr3R 20256892 intron cic + chr3R 20256937 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-176 1679 chr3R 20266518 20266549 chr3R 20272989 20273020 Burdock 7 6471 0.0 2.0 1.0 3.5 6502 chr3R 20266518 intron cic + chr3R 20269769 intron cic + chr3R 20273020 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-176 1680 chr3R 20282292 20282310 chr3R 20282368 20282386 6 76 0.5 4.0 2.2 1.9 94 chr3R 20282292 intron cic + chr3R 20282339 intron cic + chr3R 20282386 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-176 1681 chr3R 20286149 20286183 chr3R 20286256 20286289 22 107 5.0 2.0 3.5 4.9 140 chr3R 20286149 intron cic + chr3R 20286219 intron cic + chr3R 20286289 intron cic + chr3R_22_20285001 chr3R_20285001 RAL-176 1682 chr3R 20350220 20350239 chr3R 20350284 20350320 15 76 2.5 3.0 2.8 3.9 100 chr3R 20350220 intergenic not near genes chr3R 20350270 intergenic not near genes chr3R 20350320 intergenic not near genes chr3R_15_20350001 chr3R_20350001 RAL-176 1683 chr3R 20434845 20434857 chr3R 20435030 20435042 5 185 5.5 0.5 3.0 1.2 197 chr3R 20434845 intron Gfrl - chr3R 20434944 intron Gfrl - chr3R 20435042 intron Gfrl - chr3R_5_20430001 chr3R_20430001 RAL-176 1684 chr3R 20453646 20453669 chr3R 20453749 20453769 15 101 8.0 15.0 11.5 1.2 123 chr3R 20453646 intron Gfrl - chr3R 20453708 intron Gfrl - chr3R 20453769 intron Gfrl - chr3R_15_20450001 chr3R_20450001 RAL-176 1685 chr3R 20469294 20469311 chr3R 20469379 20469410 5 95 1.0 0.0 0.5 3.3 116 chr3R 20469294 intron Gfrl - chr3R 20469352 intron Gfrl - chr3R 20469410 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-176 1686 chr3R 20512348 20512369 chr3R 20512431 20512447 5 81 4.0 5.0 4.5 0.9 99 chr3R 20512348 5` UTR CG4288 - chr3R 20512398 5` UTR CG4288 - chr3R 20512447 5` UTR CG4288 - chr3R_5_20510001 chr3R_20510001 RAL-176 1687 chr3R 20594482 20594513 chr3R 20594572 20594602 5 90 3.0 0.0 1.5 2.0 120 chr3R 20594482 intron bon + chr3R 20594542 intron bon + chr3R 20594602 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-176 1688 chr3R 20596192 20596214 chr3R 20596279 20596301 7 87 0.5 4.5 2.5 2.0 109 chr3R 20596192 intron bon + chr3R 20596246 intron bon + chr3R 20596301 intron bon + chr3R_7_20595001 chr3R_20595001 RAL-176 1689 chr3R 20722855 20722886 chr3R 20722982 20723010 11 124 7.0 4.5 5.8 1.6 155 chr3R 20722855 intergenic not near genes chr3R 20722932 intergenic not near genes chr3R 20723010 intergenic not near genes chr3R_11_20720001 chr3R_20720001 RAL-176 1690 chr3R 20787442 20787453 chr3R 20787533 20787544 4 91 8.0 2.5 5.2 0.6 102 chr3R 20787442 intron Syp + chr3R 20787493 intron Syp + chr3R 20787544 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-176 1691 chr3R 20854486 20854518 chr3R 20859275 20859308 Doc 12 4789 14.5 3.5 9.0 1.2 4822 chr3R 20854486 intron Ir93a - chr3R 20856897 intron Ir93a - chr3R 20859308 exon Ir93a - chr3R_12_20855001 chr3R_20855001 RAL-176 1692 chr3R 20938907 20938941 chr3R 20938994 20939016 17 83 5.0 5.5 5.2 2.7 109 chr3R 20938907 intron CG31191 - chr3R 20938962 intron CG31191 - chr3R 20939016 intron CG31191 - chr3R_17_20935001 chr3R_20935001 RAL-176 1693 chr3R 20942809 20942843 chr3R 20942885 20942913 13 74 1.5 6.0 3.8 2.7 104 chr3R 20942809 intron CG31191 - chr3R 20942861 intron CG31191 - chr3R 20942913 intron CG31191 - chr3R_13_20940001 chr3R_20940001 RAL-176 1694 chr3R 21070585 21070616 chr3R 21090640 21090671 8 20054 31.0 29.5 30.2 0.3 20086 chr3R 21070585 intron,3` UTR AnxB9 +,r-l - chr3R 21080628 exon HHEX - chr3R 21090671 intron,intron RhoGAP93B -,CR44178 + chr3R_8_21080001 chr3R_21080001 RAL-176 1695 chr3R 21108038 21108066 chr3R 21108299 21108327 12 261 2.5 3.5 3.0 3.0 289 chr3R 21108038 intergenic Sec15 -,rtet + chr3R 21108182 intergenic Sec15 -,rtet + chr3R 21108327 intergenic rtet +,Sec15 - chr3R_12_21105001 chr3R_21105001 RAL-176 1696 chr3R 21141679 21141690 chr3R 21150160 21150163 Tirant 4 8478 16.5 9.0 12.8 0.3 8484 chr3R 21141679 intron SNF4Agamma + chr3R 21145921 intron SNF4Agamma + chr3R 21150163 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-176 1697 chr3R 21141704 21141705 chr3R 21150155 21150186 Tirant 5 8467 7.0 8.0 7.5 0.6 8482 chr3R 21141704 intron SNF4Agamma + chr3R 21145945 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-176 1698 chr3R 21141706 21141707 chr3R 21150153 21150162 Tirant 4 8452 7.0 8.0 7.5 0.5 8456 chr3R 21141706 intron SNF4Agamma + chr3R 21145934 intron SNF4Agamma + chr3R 21150162 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-176 1699 chr3R 21068672 21068680 chr3R 21152643 21152650 4 83970 48.0 17.0 32.5 0.1 83978 chr3R 21068672 exon AnxB9 + chr3R 21110661 exon rtet + chr3R 21152650 intron SNF4Agamma + chr3R_4_21110001 chr3R_21110001 RAL-176 1700 chr3R 21154549 21154587 chr3R 21154754 21154802 27 213 13.0 0.0 6.5 3.6 253 chr3R 21154549 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_27_21150001 chr3R_21150001 RAL-176 1701 chr3R 21214746 21214758 chr3R 21214918 21214927 5 171 4.0 3.5 3.8 1.0 181 chr3R 21214746 intergenic CG5862 + chr3R 21214836 intergenic CG5862 + chr3R 21214927 intergenic CG5862 + chr3R_5_21210001 chr3R_21210001 RAL-176 1702 chr3R 21240454 21240474 chr3R 21240546 21240566 7 92 2.5 5.0 3.8 1.5 112 chr3R 21240454 intergenic not near genes chr3R 21240510 intergenic not near genes chr3R 21240566 intergenic not near genes chr3R_7_21240001 chr3R_21240001 RAL-176 1703 chr3R 21295324 21295352 chr3R 21295421 21295449 7 97 3.5 1.5 2.5 2.0 125 chr3R 21295324 intergenic not near genes chr3R 21295386 intergenic not near genes chr3R 21295449 intergenic not near genes chr3R_7_21295001 chr3R_21295001 RAL-176 1704 chr3R 21481386 21481394 chr3R 21481477 21481485 4 91 3.5 0.0 1.8 1.4 99 chr3R 21481386 intergenic not near genes chr3R 21481436 intergenic not near genes chr3R 21481485 intergenic not near genes chr3R_4_21480001 chr3R_21480001 RAL-176 1705 chr3R 21520122 21520134 chr3R 21520216 21520228 4 94 1.0 0.5 0.8 2.2 106 chr3R 21520122 intergenic not near genes chr3R 21520175 intergenic not near genes chr3R 21520228 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-176 1706 chr3R 21569836 21569872 chr3R 21569917 21569953 15 78 3.0 2.0 2.5 4.3 117 chr3R 21569836 intergenic InR - chr3R 21569894 intergenic InR - chr3R 21569953 intergenic InR - chr3R_15_21565001 chr3R_21565001 RAL-176 1707 chr3R 21662185 21662219 chr3R 21662316 21662351 13 132 2.0 3.0 2.5 3.7 166 chr3R 21662185 exon CG6353 - chr3R 21662268 intron CG6353 - chr3R 21662351 intron CG6353 - chr3R_13_21660001 chr3R_21660001 RAL-176 1708 chr3R 21709234 21709268 chr3R 21709311 21709345 13 76 6.0 6.0 6.0 1.9 111 chr3R 21709234 intron CG31176 - chr3R 21709290 intron CG31176 - chr3R 21709345 intron CG31176 - chr3R_13_21705001 chr3R_21705001 RAL-176 1709 chr3R 21734866 21734883 chr3R 21734940 21734959 5 76 4.0 0.0 2.0 1.7 93 chr3R 21734866 intergenic not near genes chr3R 21734912 intergenic not near genes chr3R 21734959 intergenic not near genes chr3R_5_21730001 chr3R_21730001 RAL-176 1710 chr3R 21761125 21761140 chr3R 21768516 21768531 mdg1 6 7390 12.0 8.0 10.0 0.5 7406 chr3R 21761125 exon CG42335 + chr3R 21764828 intron CG42335 + chr3R 21768531 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-176 1711 chr3R 21761142 21761153 chr3R 21768514 21768545 mdg1 11 7384 9.0 7.5 8.2 1.2 7403 chr3R 21761142 exon CG42335 + chr3R 21764844 intron CG42335 + chr3R 21768545 exon CG42335 + chr3R_11_21760001 chr3R_21760001 RAL-176 1712 chr3R 21784861 21784878 chr3R 21784959 21784975 9 97 4.5 0.0 2.2 2.8 114 chr3R 21784861 3` UTR,3` UTR CASK -,CRG - chr3R 21784918 3` UTR,3` UTR CASK -,CRG - chr3R 21784975 3` UTR,3` UTR CASK -,CRG - chr3R_9_21780001 chr3R_21780001 RAL-176 1713 chr3R 21846794 21846806 chr3R 21846872 21846885 4 79 2.0 2.0 2.0 1.3 91 chr3R 21846794 intergenic CR44087 +,Gr93d - chr3R 21846840 intergenic CR44087 +,Gr93d - chr3R 21846885 intergenic CR44087 +,Gr93d - chr3R_4_21845001 chr3R_21845001 RAL-176 1714 chr3R 8339246 8339247 chr3R 21907534 21907534 12 13568288 24.0 42.0 33.0 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_12_15120001 chr3R_15120001 RAL-176 1715 chr3R 9620954 9620958 chr3R 21907534 21907534 8 12286578 17.5 42.0 29.8 0.3 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-176 1716 chr3R 13693028 13693028 chr3R 21907534 21907534 4 8214506 17.0 42.0 29.5 0.1 8214506 chr3R 13693028 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-176 1717 chr3R 15286987 15286988 chr3R 21907534 21907534 4 6620547 28.0 42.0 35.0 0.1 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-176 1718 chr3R 17389054 17389054 chr3R 21907534 21907534 8 4518480 12.5 42.0 27.2 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_8_19645001 chr3R_19645001 RAL-176 1719 chr3R 21907534 21907534 chr3R 24389465 24389465 6 2481931 44.5 18.0 31.2 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 RAL-176 1720 chr3R 21907534 21907534 chr3R 26659332 26659337 5 4751801 44.5 27.0 35.8 0.1 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-176 1721 chr3R 21907534 21907534 chr3R 28831801 28831822 32 6924268 44.5 46.0 45.2 0.7 6924288 chr3R 21907534 intergenic CG6678 + chr3R 25369678 intron Fur1 - chr3R 28831822 5` UTR WASp - chr3R_32_25365001 chr3R_25365001 RAL-176 1722 chr3R 21907534 21907534 chr3R 29013340 29013340 6 7105806 44.5 31.0 37.8 0.2 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_6_25460001 chr3R_25460001 RAL-176 1723 chr3R 4542444 4542496 chr3R 21907535 21907535 4 17365061 35.5 42.0 38.8 0.1 17365091 chr3R 4542444 intron,exon CG34357 -,Mur82C + chr3R 13224990 intron Ace - chr3R 21907535 intergenic CG6678 + chr3R_4_13225001 chr3R_13225001 RAL-176 1724 chr3R 8339246 8339247 chr3R 21907535 21907535 16 13568288 24.0 42.0 33.0 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_16_15120001 chr3R_15120001 RAL-176 1725 chr3R 9523301 9523565 chr3R 21907535 21907535 4 12384144 39.5 42.0 40.8 0.1 12384234 chr3R 9523301 intron CG8176 + chr3R 15715418 intergenic CG31294 - chr3R 21907535 intergenic CG6678 + chr3R_4_15715001 chr3R_15715001 RAL-176 1726 chr3R 9620954 9620956 chr3R 21907535 21907535 13 12286579 17.0 42.0 29.5 0.4 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_13_15760001 chr3R_15760001 RAL-176 1727 chr3R 17389054 17389055 chr3R 21907535 21907535 5 4518481 12.5 42.0 27.2 0.2 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-176 1728 chr3R 20177844 20177845 chr3R 21907535 21907535 4 1729690 7.5 42.0 24.8 0.2 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-176 1729 chr3R 21907535 21907535 chr3R 26659333 26659336 5 4751799 45.5 27.5 36.5 0.1 4751801 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-176 1730 chr3R 21907535 21907535 chr3R 28831801 28831802 48 6924266 45.5 46.0 45.8 1.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_48_25365001 chr3R_25365001 RAL-176 1731 chr3R 8339246 8339247 chr3R 21907536 21907536 6 13568289 24.0 42.5 33.2 0.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-176 1732 chr3R 9620956 9620957 chr3R 21907536 21907536 7 12286580 17.0 42.5 29.8 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-176 1733 chr3R 15286988 15286988 chr3R 21907536 21907536 4 6620548 28.0 42.5 35.2 0.1 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-176 1734 chr3R 21907536 21907536 chr3R 26659332 26659337 6 4751799 45.5 27.0 36.2 0.2 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_6_24280001 chr3R_24280001 RAL-176 1735 chr3R 21907536 21907536 chr3R 27499988 27500000 4 5592457 45.5 23.5 34.5 0.1 5592464 chr3R 21907536 intergenic CG6678 + chr3R 24703768 intron slo + chr3R 27500000 intergenic not near genes chr3R_4_24700001 chr3R_24700001 RAL-176 1736 chr3R 21907536 21907536 chr3R 28831801 28831802 55 6924266 45.5 46.0 45.8 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_55_25365001 chr3R_25365001 RAL-176 1737 chr3R 21907536 21907536 chr3R 29013339 29013340 11 7105804 45.5 30.0 37.8 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_11_25460001 chr3R_25460001 RAL-176 1738 chr3R 21983136 21983170 chr3R 21983217 21983249 13 80 3.5 2.5 3.0 3.2 113 chr3R 21983136 intron Eip93F + chr3R 21983192 intron Eip93F + chr3R 21983249 intron Eip93F + chr3R_13_21980001 chr3R_21980001 RAL-176 1739 chr3R 22013053 22013084 chr3R 22013135 22013166 6 82 5.0 3.0 4.0 1.2 113 chr3R 22013053 intergenic not near genes chr3R 22013110 intergenic not near genes chr3R 22013166 intergenic not near genes chr3R_6_22010001 chr3R_22010001 RAL-176 1740 chr3R 22055115 22055120 chr3R 22055209 22055214 4 94 17.0 7.5 12.2 0.3 99 chr3R 22055115 intron how + chr3R 22055164 intron how + chr3R 22055214 intron how + chr3R_4_22055001 chr3R_22055001 RAL-176 1741 chr3R 22208457 22208478 chr3R 22208548 22208570 6 92 3.5 2.0 2.8 1.6 113 chr3R 22208457 intron,intron SKIP +,CR45224 - chr3R 22208514 intron,intron SKIP +,CR45224 - chr3R 22208570 intron,intron SKIP +,CR45224 - chr3R_6_22205001 chr3R_22205001 RAL-176 1742 chr3R 22272349 22272364 chr3R 22272431 22272446 6 82 6.5 5.0 5.8 0.9 97 chr3R 22272349 intron SKIP + chr3R 22272398 intron SKIP + chr3R 22272446 intron SKIP + chr3R_6_22270001 chr3R_22270001 RAL-176 1743 chr3R 22433093 22433102 chr3R 22433192 22433202 4 100 6.5 10.5 8.5 0.4 109 chr3R 22433093 intron CG13847 - chr3R 22433148 intron CG13847 - chr3R 22433202 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-176 1744 chr3R 22450541 22450578 chr3R 22453181 22453218 NOF 25 2637 4.5 9.5 7.0 3.1 2677 chr3R 22450541 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_25_22450001 chr3R_22450001 RAL-176 1745 chr3R 22507798 22507819 chr3R 22507872 22507903 12 82 4.5 5.5 5.0 2.0 105 chr3R 22507798 intron Octbeta1R + chr3R 22507850 intron Octbeta1R + chr3R 22507903 intron Octbeta1R + chr3R_12_22505001 chr3R_22505001 RAL-176 1746 chr3R 22538441 22538470 chr3R 22538526 22538555 9 85 2.5 4.0 3.2 2.1 114 chr3R 22538441 intron CG5326 - chr3R 22538498 intron CG5326 - chr3R 22538555 intron CG5326 - chr3R_9_22535001 chr3R_22535001 RAL-176 1747 chr3R 22597374 22597409 chr3R 22597451 22597454 28 73 5.0 7.0 6.0 4.0 80 chr3R 22597374 intron Efa6 + chr3R 22597414 intron Efa6 + chr3R 22597454 intron Efa6 + chr3R_28_22595001 chr3R_22595001 RAL-176 1748 chr3R 22640704 22640735 chr3R 22640818 22640850 14 114 3.0 3.5 3.2 3.3 146 chr3R 22640704 intron wake + chr3R 22640777 intron wake + chr3R 22640850 intron wake + chr3R_14_22640001 chr3R_22640001 RAL-176 1749 chr3R 22711243 22711247 chr3R 22711312 22711322 4 74 0.5 13.5 7.0 0.5 79 chr3R 22711243 3` UTR wge - chr3R 22711282 3` UTR wge - chr3R 22711322 3` UTR wge - chr3R_4_22710001 chr3R_22710001 RAL-176 1750 chr3R 22794527 22794533 chr3R 22794603 22794608 4 76 8.0 6.0 7.0 0.5 81 chr3R 22794527 intergenic CG7029 + chr3R 22794568 intergenic not near genes chr3R 22794608 intergenic not near genes chr3R_4_22790001 chr3R_22790001 RAL-176 1751 chr3R 22794534 22794547 chr3R 22794602 22794623 9 75 5.0 6.0 5.5 1.4 89 chr3R 22794534 intergenic not near genes chr3R 22794578 intergenic not near genes chr3R 22794623 intergenic not near genes chr3R_9_22790001 chr3R_22790001 RAL-176 1752 chr3R 22829800 22829820 chr3R 22829882 22829902 5 82 0.0 3.0 1.5 2.0 102 chr3R 22829800 intergenic not near genes chr3R 22829851 intergenic not near genes chr3R 22829902 intergenic not near genes chr3R_5_22825001 chr3R_22825001 RAL-176 1753 chr3R 22842386 22842420 chr3R 22842485 22842519 24 99 9.0 7.5 8.2 2.6 133 chr3R 22842386 intergenic not near genes chr3R 22842452 intergenic not near genes chr3R 22842519 intergenic not near genes chr3R_24_22840001 chr3R_22840001 RAL-176 1754 chr3R 22860154 22860174 chr3R 22860246 22860266 8 92 3.0 3.0 3.0 2.0 112 chr3R 22860154 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860266 intergenic not near genes chr3R_8_22860001 chr3R_22860001 RAL-176 1755 chr3R 22880602 22880612 chr3R 22880679 22880689 5 77 16.5 8.5 12.5 0.4 87 chr3R 22880602 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880689 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-176 1756 chr3R 22880938 22880959 chr3R 22881076 22881097 5 137 2.0 1.0 1.5 2.0 159 chr3R 22880938 intergenic not near genes chr3R 22881018 intergenic not near genes chr3R 22881097 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-176 1757 chr3R 23073673 23073689 chr3R 23073744 23073778 9 84 2.0 3.5 2.8 2.4 105 chr3R 23073673 intron CG13830 - chr3R 23073726 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-176 1758 chr3R 23077077 23077102 chr3R 23077371 23077396 7 294 5.5 1.0 3.2 1.7 319 chr3R 23077077 intron CG13830 - chr3R 23077236 intron CG13830 - chr3R 23077396 intron CG13830 - chr3R_7_23075001 chr3R_23075001 RAL-176 1759 chr3R 23090407 23090435 chr3R 23090487 23090518 14 82 3.5 6.0 4.8 2.4 111 chr3R 23090407 intron CG13830 - chr3R 23090462 intron CG13830 - chr3R 23090518 intron CG13830 - chr3R_14_23090001 chr3R_23090001 RAL-176 1760 chr3R 23091259 23091287 chr3R 23091344 23091372 7 85 3.0 2.5 2.8 1.8 113 chr3R 23091259 intron CG13830 - chr3R 23091316 intron CG13830 - chr3R 23091372 intron CG13830 - chr3R_7_23090001 chr3R_23090001 RAL-176 1761 chr3R 23245990 23246025 chr3R 23246071 23246107 6 80 1.5 3.5 2.5 1.7 117 chr3R 23245990 intron CG4467 - chr3R 23246048 intron CG4467 - chr3R 23246107 intron CG4467 - chr3R_6_23245001 chr3R_23245001 RAL-176 1762 chr3R 23277350 23277360 chr3R 23277440 23277449 4 90 6.0 7.5 6.8 0.5 99 chr3R 23277350 intron orb - chr3R 23277400 intron orb - chr3R 23277449 intron orb - chr3R_4_23275001 chr3R_23275001 RAL-176 1763 chr3R 23346847 23346867 chr3R 23346925 23346945 4 78 1.5 3.5 2.5 1.1 98 chr3R 23346847 intergenic not near genes chr3R 23346896 intergenic not near genes chr3R 23346945 intergenic not near genes chr3R_4_23345001 chr3R_23345001 RAL-176 1764 chr3R 23421975 23422011 chr3R 23422060 23422096 15 84 6.5 5.0 5.8 2.2 121 chr3R 23421975 intron CG4374 - chr3R 23422036 intron CG4374 - chr3R 23422096 intron CG4374 - chr3R_15_23420001 chr3R_23420001 RAL-176 1765 chr3R 23558409 23558428 chr3R 23560190 23560209 Bari1 4 1781 1.5 2.0 1.8 1.4 1800 chr3R 23558409 intron beat-IV + chr3R 23559309 intron beat-IV + chr3R 23560209 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-176 1766 chr3R 23639931 23639954 chr3R 23640237 23640260 10 306 4.5 2.5 3.5 2.2 329 chr3R 23639931 intron CG31145 - chr3R 23640096 intron CG31145 - chr3R 23640260 intron CG31145 - chr3R_10_23640001 chr3R_23640001 RAL-176 1767 chr3R 23677192 23677197 chr3R 23677275 23677276 4 82 9.0 9.5 9.2 0.4 84 chr3R 23677192 intergenic CG13822 + chr3R 23677234 intergenic CG13822 + chr3R 23677276 intergenic CG13822 + chr3R_4_23675001 chr3R_23675001 RAL-176 1768 chr3R 23684699 23684730 chr3R 23685185 23685190 roo 16 475 4.5 6.5 5.5 2.5 491 chr3R 23684699 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685190 exon CG18754 + chr3R_16_23680001 chr3R_23680001 RAL-176 1769 chr3R 23688473 23688505 chr3R 23688564 23688577 6 85 5.5 7.0 6.2 0.8 104 chr3R 23688473 intergenic SPE + chr3R 23688525 intergenic SPE +,CG10254 - chr3R 23688577 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-176 1770 chr3R 23823349 23823376 chr3R 23823454 23823481 11 103 5.0 7.5 6.2 1.5 132 chr3R 23823349 intron CG34355 + chr3R 23823415 intron CG34355 + chr3R 23823481 intron CG34355 + chr3R_11_23820001 chr3R_23820001 RAL-176 1771 chr3R 23835415 23835426 chr3R 23844564 23844575 roo 5 9150 2.0 0.5 1.2 2.3 9160 chr3R 23835415 intron CG34355 + chr3R 23839995 intron CG34355 + chr3R 23844575 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-176 1772 chr3R 23884294 23884323 chr3R 23884378 23884407 9 83 5.0 1.5 3.2 2.1 113 chr3R 23884294 intron Pli - chr3R 23884350 intron Pli - chr3R 23884407 intron Pli - chr3R_9_23880001 chr3R_23880001 RAL-176 1773 chr3R 23911207 23911235 chr3R 23911357 23911385 27 150 6.0 9.0 7.5 3.2 178 chr3R 23911207 intron sba - chr3R 23911296 intron sba - chr3R 23911385 intron sba - chr3R_27_23910001 chr3R_23910001 RAL-176 1774 chr3R 23944912 23944936 chr3R 23944997 23945020 15 85 4.0 5.5 4.8 2.6 108 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_15_23940001 chr3R_23940001 RAL-176 1775 chr3R 23949042 23949069 chr3R 23949118 23949146 11 77 4.5 3.0 3.8 2.3 104 chr3R 23949042 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_11_23945001 chr3R_23945001 RAL-176 1776 chr3R 23963431 23963439 chr3R 23963514 23963522 7 82 12.5 23.5 18.0 0.4 91 chr3R 23963431 intron CG31140 + chr3R 23963476 intron CG31140 + chr3R 23963522 intron CG31140 + chr3R_7_23960001 chr3R_23960001 RAL-176 1777 chr3R 24011670 24011680 chr3R 24011753 24011762 9 83 4.0 10.0 7.0 1.1 92 chr3R 24011670 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011762 intron KrT95D - chr3R_9_24010001 chr3R_24010001 RAL-176 1778 chr3R 24032082 24032118 chr3R 24032162 24032198 30 79 4.5 7.5 6.0 4.3 116 chr3R 24032082 intergenic Ime4 +,KrT95D - chr3R 24032140 intergenic Ime4 +,KrT95D - chr3R 24032198 exon Ime4 + chr3R_30_24030001 chr3R_24030001 RAL-176 1779 chr3R 24072087 24072111 chr3R 24072522 24072545 jockey 16 437 5.0 8.5 6.8 2.1 458 chr3R 24072087 intron 4EHP - chr3R 24072316 intron 4EHP - chr3R 24072545 intron 4EHP - chr3R_16_24070001 chr3R_24070001 RAL-176 1780 chr3R 24076915 24076942 chr3R 24078382 24078409 hobo 5 1466 6.5 7.5 7.0 0.6 1494 chr3R 24076915 intron 4EHP - chr3R 24077662 intron 4EHP - chr3R 24078409 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-176 1781 chr3R 24076946 24076948 chr3R 24078379 24078413 hobo 4 1458 5.0 5.5 5.2 0.6 1467 chr3R 24076946 intron 4EHP - chr3R 24077680 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-176 1782 chr3R 24199739 24199771 chr3R 24199819 24199851 16 80 3.5 5.5 4.5 2.9 112 chr3R 24199739 intron twin - chr3R 24199795 intron twin - chr3R 24199851 intron twin - chr3R_16_24195001 chr3R_24195001 RAL-176 1783 chr3R 24207217 24207246 chr3R 24212293 24212322 flea 14 5076 9.5 7.5 8.5 1.5 5105 chr3R 24207217 intron twin - chr3R 24209770 intron twin - chr3R 24212322 intron twin - chr3R_14_24205001 chr3R_24205001 RAL-176 1784 chr3R 24384051 24384084 chr3R 24384133 24384166 8 81 1.5 4.5 3.0 2.0 115 chr3R 24384051 intron CG17780 - chr3R 24384108 intron CG17780 - chr3R 24384166 exon CG17780 - chr3R_8_24380001 chr3R_24380001 RAL-176 1785 chr3R 21907534 21907536 chr3R 24389465 24389465 10 2481930 45.5 18.0 31.8 0.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_10_23145001 chr3R_23145001 RAL-176 1786 chr3R 24433481 24433505 chr3R 24433560 24433584 10 77 3.5 6.5 5.0 1.7 103 chr3R 24433481 intron nAChRalpha1 - chr3R 24433532 intron nAChRalpha1 - chr3R 24433584 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-176 1787 chr3R 24441621 24441645 chr3R 24441903 24441927 11 282 5.5 3.0 4.2 2.1 306 chr3R 24441621 intron nAChRalpha1 - chr3R 24441774 intron nAChRalpha1 - chr3R 24441927 intron nAChRalpha1 - chr3R_11_24440001 chr3R_24440001 RAL-176 1788 chr3R 24441647 24441650 chr3R 24441900 24441932 4 270 3.5 2.0 2.8 1.1 285 chr3R 24441647 intron nAChRalpha1 - chr3R 24441790 intron nAChRalpha1 - chr3R 24441932 intron nAChRalpha1 - chr3R_4_24440001 chr3R_24440001 RAL-176 1789 chr3R 24466463 24466497 chr3R 24466541 24466575 10 75 1.0 3.5 2.2 3.1 112 chr3R 24466463 intergenic not near genes chr3R 24466519 intergenic not near genes chr3R 24466575 intergenic not near genes chr3R_10_24465001 chr3R_24465001 RAL-176 1790 chr3R 24495287 24495319 chr3R 24495366 24495398 22 78 5.5 3.0 4.2 4.2 111 chr3R 24495287 intergenic not near genes chr3R 24495342 intergenic not near genes chr3R 24495398 intergenic not near genes chr3R_22_24495001 chr3R_24495001 RAL-176 1791 chr3R 24527805 24527831 chr3R 24527896 24527922 5 91 2.0 6.5 4.2 1.0 117 chr3R 24527805 intergenic CG6607 +,CG13618 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527922 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-176 1792 chr3R 24569951 24569970 chr3R 24570209 24570224 5 257 1.5 1.5 1.5 2.0 273 chr3R 24569951 intron CG13624 - chr3R 24570088 intron CG13624 - chr3R 24570224 intron CG13624 - chr3R_5_24570001 chr3R_24570001 RAL-176 1793 chr3R 24730088 24730126 chr3R 24732466 24732486 Doc 15 2365 3.5 0.0 1.8 5.4 2398 chr3R 24730088 intron tok + chr3R 24731287 intron tok + chr3R 24732486 intron tok + chr3R_15_24730001 chr3R_24730001 RAL-176 1794 chr3R 24789982 24790013 chr3R 24790127 24790158 6 145 5.0 6.0 5.5 0.9 176 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790158 intron Ets96B + chr3R_6_24790001 chr3R_24790001 RAL-176 1795 chr3R 24927125 24927154 chr3R 24931915 24931945 Doc 11 4790 4.0 3.5 3.8 2.3 4820 chr3R 24927125 intergenic Trf4-2 + chr3R 24929535 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_11_24925001 chr3R_24925001 RAL-176 1796 chr3R 24973959 24973984 chr3R 24974035 24974060 7 76 4.0 3.5 3.8 1.5 101 chr3R 24973959 intergenic not near genes chr3R 24974010 intergenic not near genes chr3R 24974060 intergenic not near genes chr3R_7_24970001 chr3R_24970001 RAL-176 1797 chr3R 25004900 25004922 chr3R 25004983 25005005 9 83 7.5 10.5 9.0 0.9 105 chr3R 25004900 intron tnc + chr3R 25004952 intron tnc + chr3R 25005005 intron tnc + chr3R_9_25000001 chr3R_25000001 RAL-176 1798 chr3R 25027536 25027568 chr3R 25027749 25027781 23 213 5.5 3.5 4.5 4.2 245 chr3R 25027536 intron Hr96 + chr3R 25027658 intron Hr96 + chr3R 25027781 intron Hr96 + chr3R_23_25025001 chr3R_25025001 RAL-176 1799 chr3R 25050991 25051007 chr3R 25051068 25051084 8 75 3.5 7.0 5.2 1.3 93 chr3R 25050991 intron CG11791 + chr3R 25051038 intron CG11791 + chr3R 25051084 intron CG11791 + chr3R_8_25050001 chr3R_25050001 RAL-176 1800 chr3R 25270758 25270765 chr3R 25270834 25270840 6 76 5.0 11.0 8.0 0.7 82 chr3R 25270758 exon,5` UTR CG11889 +,CG11891 + chr3R 25270799 exon,5` UTR CG11889 +,CG11891 + chr3R 25270840 exon,5` UTR CG11889 +,CG11891 + chr3R_6_25270001 chr3R_25270001 RAL-176 1801 chr3R 25270766 25270778 chr3R 25270830 25270841 10 70 3.0 7.0 5.0 1.7 75 chr3R 25270766 exon,5` UTR CG11889 +,CG11891 + chr3R 25270804 exon,5` UTR CG11889 +,CG11891 + chr3R 25270841 exon,5` UTR CG11889 +,CG11891 + chr3R_10_25270001 chr3R_25270001 RAL-176 1802 chr3R 25268059 25268067 chr3R 25272652 25272656 6 4591 23.5 27.0 25.2 0.2 4597 chr3R 25268059 intron CR45214 - chr3R 25270358 exon,5` UTR CG11889 +,CG11891 + chr3R 25272656 3` UTR,exon CG11889 +,CG11891 + chr3R_6_25270001 chr3R_25270001 RAL-176 1803 chr3R 25374844 25374870 chr3R 25374922 25374948 4 78 2.5 4.0 3.2 1.0 104 chr3R 25374844 intron Fur1 - chr3R 25374896 intron Fur1 - chr3R 25374948 intron Fur1 - chr3R_4_25370001 chr3R_25370001 RAL-176 1804 chr3R 25612846 25612879 chr3R 25612949 25612970 18 98 0.0 5.0 2.5 5.1 124 chr3R 25612846 intron Npl4 - chr3R 25612908 intron Npl4 - chr3R 25612970 intron Npl4 - chr3R_18_25610001 chr3R_25610001 RAL-176 1805 chr3R 25689128 25689162 chr3R 25689236 25689270 17 106 4.5 9.5 7.0 2.1 142 chr3R 25689128 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689270 intergenic not near genes chr3R_17_25685001 chr3R_25685001 RAL-176 1806 chr3R 25696325 25696339 chr3R 25696410 25696411 5 82 8.5 4.0 6.2 0.7 86 chr3R 25696325 intergenic not near genes chr3R 25696368 intergenic not near genes chr3R 25696411 intergenic not near genes chr3R_5_25695001 chr3R_25695001 RAL-176 1807 chr3R 25782901 25782907 chr3R 25782978 25782984 4 77 12.0 7.5 9.8 0.4 83 chr3R 25782901 intergenic not near genes chr3R 25782942 intergenic not near genes chr3R 25782984 intergenic not near genes chr3R_4_25780001 chr3R_25780001 RAL-176 1808 chr3R 25782911 25782934 chr3R 25782988 25783011 10 77 4.5 11.5 8.0 1.1 100 chr3R 25782911 intergenic not near genes chr3R 25782961 intergenic not near genes chr3R 25783011 intergenic not near genes chr3R_10_25780001 chr3R_25780001 RAL-176 1809 chr3R 25797917 25797942 chr3R 25799673 25799698 17 1756 30.5 24.5 27.5 0.6 1781 chr3R 25797917 intergenic CR43847 - chr3R 25798808 intergenic not near genes chr3R 25799698 intergenic not near genes chr3R_17_25795001 chr3R_25795001 RAL-176 1810 chr3R 25797122 25797157 chr3R 25799839 25799873 17 2716 35.5 34.5 35.0 0.5 2751 chr3R 25797122 intron CR43847 - chr3R 25798498 intergenic not near genes chr3R 25799873 intergenic not near genes chr3R_17_25795001 chr3R_25795001 RAL-176 1811 chr3R 25814052 25814072 chr3R 25814120 25814154 10 80 7.5 4.0 5.8 1.5 102 chr3R 25814052 intergenic not near genes chr3R 25814103 intergenic not near genes chr3R 25814154 intergenic not near genes chr3R_10_25810001 chr3R_25810001 RAL-176 1812 chr3R 25832694 25832724 chr3R 25841874 25841906 roo 22 9180 8.5 11.5 10.0 2.0 9212 chr3R 25832694 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_22_25835001 chr3R_25835001 RAL-176 1813 chr3R 25905905 25905936 chr3R 25906099 25906131 14 194 6.5 1.5 4.0 2.8 226 chr3R 25905905 intron CR43259 - chr3R 25906018 intron CR43259 - chr3R 25906131 3` UTR CR43259 - chr3R_14_25905001 chr3R_25905001 RAL-176 1814 chr3R 25927503 25927537 chr3R 25927585 25927619 6 81 2.0 0.5 1.2 2.7 116 chr3R 25927503 intron CCAP-R - chr3R 25927561 intron CCAP-R - chr3R 25927619 intron CCAP-R - chr3R_6_25925001 chr3R_25925001 RAL-176 1815 chr3R 26038969 26038991 chr3R 26039106 26039128 5 137 2.5 0.5 1.5 2.0 159 chr3R 26038969 intergenic not near genes chr3R 26039048 intergenic not near genes chr3R 26039128 intergenic not near genes chr3R_5_26035001 chr3R_26035001 RAL-176 1816 chr3R 26066354 26066392 chr3R 26066438 26066477 20 83 3.5 4.0 3.8 4.2 123 chr3R 26066354 intergenic not near genes chr3R 26066416 intergenic not near genes chr3R 26066477 intergenic not near genes chr3R_20_26065001 chr3R_26065001 RAL-176 1817 chr3R 26108825 26108842 chr3R 26117408 26117411 Tirant 4 8576 8.0 1.5 4.8 0.7 8586 chr3R 26108825 5` UTR CG31324 + chr3R 26113118 intron CG31324 + chr3R 26117411 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-176 1818 chr3R 26122464 26122480 chr3R 26122540 26122556 13 74 15.5 9.0 12.2 1.0 92 chr3R 26122464 intron CG31324 + chr3R 26122510 intron CG31324 + chr3R 26122556 intron CG31324 + chr3R_13_26120001 chr3R_26120001 RAL-176 1819 chr3R 26126552 26126567 chr3R 26126638 26126653 7 86 1.0 1.5 1.2 3.2 101 chr3R 26126552 intron CG31324 + chr3R 26126602 intron CG31324 + chr3R 26126653 intron CG31324 + chr3R_7_26125001 chr3R_26125001 RAL-176 1820 chr3R 26294734 26294749 chr3R 26294812 26294827 4 78 2.0 6.5 4.2 0.8 93 chr3R 26294734 intergenic not near genes chr3R 26294780 intergenic not near genes chr3R 26294827 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-176 1821 chr3R 26376322 26376354 chr3R 26385482 26385514 roo 11 9159 6.5 0.5 3.5 2.4 9192 chr3R 26376322 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_11_26380001 chr3R_26380001 RAL-176 1822 chr3R 26442396 26442425 chr3R 26442515 26442543 5 119 1.0 2.0 1.5 2.0 147 chr3R 26442396 intron tx + chr3R 26442470 intron tx + chr3R 26442543 intron tx + chr3R_5_26440001 chr3R_26440001 RAL-176 1823 chr3R 26444351 26444380 chr3R 26444429 26444457 20 77 5.0 4.5 4.8 3.4 106 chr3R 26444351 intron tx + chr3R 26444404 intron tx + chr3R 26444457 intron tx + chr3R_20_26440001 chr3R_26440001 RAL-176 1824 chr3R 26489138 26489165 chr3R 26489212 26489239 12 77 3.5 3.0 3.2 2.9 101 chr3R 26489138 intron plum - chr3R 26489188 intron plum - chr3R 26489239 intron plum - chr3R_12_26485001 chr3R_26485001 RAL-176 1825 chr3R 26510529 26510534 chr3R 26519570 26519594 roo 5 9057 1.0 4.5 2.8 1.3 9065 chr3R 26510529 intron plum - chr3R 26515062 intron plum - chr3R 26519594 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-176 1826 chr3R 26541004 26541032 chr3R 26541083 26541091 14 76 1.0 0.5 0.8 7.8 87 chr3R 26541004 intron scrib + chr3R 26541048 intron scrib + chr3R 26541091 intron scrib + chr3R_14_26540001 chr3R_26540001 RAL-176 1827 chr3R 26541655 26541690 chr3R 26541742 26541776 11 86 5.5 6.0 5.8 1.6 121 chr3R 26541655 intron scrib + chr3R 26541716 intron scrib + chr3R 26541776 intron scrib + chr3R_11_26540001 chr3R_26540001 RAL-176 1828 chr3R 26558325 26558361 chr3R 26565638 26565669 Stalker4 9 7308 6.0 7.0 6.5 1.2 7344 chr3R 26558325 intron scrib + chr3R 26561997 intron scrib + chr3R 26565669 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-176 1829 chr3R 26575005 26575038 chr3R 26575084 26575117 16 78 3.5 6.0 4.8 2.8 112 chr3R 26575005 exon scrib + chr3R 26575061 intron scrib + chr3R 26575117 intron scrib + chr3R_16_26575001 chr3R_26575001 RAL-176 1830 chr3R 26641656 26641661 chr3R 26641734 26641748 4 84 4.5 9.5 7.0 0.5 92 chr3R 26641656 intergenic not near genes chr3R 26641702 intergenic not near genes chr3R 26641748 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-176 1831 chr3R 26642735 26642762 chr3R 26643120 26643156 jockey 9 389 1.5 3.0 2.2 2.8 421 chr3R 26642735 intergenic not near genes chr3R 26642946 intergenic not near genes chr3R 26643156 intergenic not near genes chr3R_9_26640001 chr3R_26640001 RAL-176 1832 chr3R 21907534 21907536 chr3R 26659336 26659336 7 4751801 45.5 29.0 37.2 0.2 4751802 chr3R 21907534 intergenic CG6678 + chr3R 24283435 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-176 1833 chr3R 26685877 26685890 chr3R 26686052 26686070 7 179 5.0 5.5 5.2 1.1 193 chr3R 26685877 intergenic not near genes chr3R 26685974 intergenic not near genes chr3R 26686070 intergenic not near genes chr3R_7_26685001 chr3R_26685001 RAL-176 1834 chr3R 26713858 26713894 chr3R 26713942 26713978 32 81 8.0 6.5 7.2 3.9 120 chr3R 26713858 5` UTR amon - chr3R 26713918 5` UTR amon - chr3R 26713978 5` UTR amon - chr3R_32_26710001 chr3R_26710001 RAL-176 1835 chr3R 26740289 26740323 chr3R 26740365 26740398 28 75 8.5 1.5 5.0 4.7 109 chr3R 26740289 intergenic not near genes chr3R 26740344 intergenic not near genes chr3R 26740398 intergenic not near genes chr3R_28_26740001 chr3R_26740001 RAL-176 1836 chr3R 26770242 26770266 chr3R 26770318 26770343 6 77 5.0 2.0 3.5 1.3 101 chr3R 26770242 intergenic CR45563 + chr3R 26770292 intergenic CR45563 + chr3R 26770343 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-176 1837 chr3R 26782689 26782723 chr3R 26782773 26782807 7 80 3.5 2.5 3.0 1.8 118 chr3R 26782689 intergenic not near genes chr3R 26782748 intergenic not near genes chr3R 26782807 intergenic not near genes chr3R_7_26780001 chr3R_26780001 RAL-176 1838 chr3R 26810555 26810585 chr3R 26811040 26811070 roo 10 485 4.0 6.5 5.2 1.6 515 chr3R 26810555 intron Tl + chr3R 26810812 intron Tl + chr3R 26811070 intron Tl + chr3R_10_26810001 chr3R_26810001 RAL-176 1839 chr3R 27028729 27028751 chr3R 27028805 27028830 9 79 3.0 5.0 4.0 1.8 101 chr3R 27028729 intron RYa-R + chr3R 27028780 intron RYa-R + chr3R 27028830 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-176 1840 chr3R 27030221 27030250 chr3R 27030350 27030379 20 128 3.0 0.5 1.8 7.1 158 chr3R 27030221 intron RYa-R + chr3R 27030300 intron RYa-R + chr3R 27030379 intron RYa-R + chr3R_20_27030001 chr3R_27030001 RAL-176 1841 chr3R 27101552 27101562 chr3R 27101658 27101668 7 106 1.5 4.5 3.0 1.8 116 chr3R 27101552 exon CG17189 + chr3R 27101610 intron CG17189 + chr3R 27101668 intron CG17189 + chr3R_7_27100001 chr3R_27100001 RAL-176 1842 chr3R 27107173 27107192 chr3R 27107397 27107416 9 224 3.0 8.0 5.5 1.4 243 chr3R 27107173 intergenic not near genes chr3R 27107294 intergenic not near genes chr3R 27107416 intergenic not near genes chr3R_9_27105001 chr3R_27105001 RAL-176 1843 chr3R 27140513 27140548 chr3R 27148123 27148154 412 35 7608 8.5 10.5 9.5 3.3 7641 chr3R 27140513 intron CG6051 - chr3R 27144334 intron CG6051 - chr3R 27148154 intron CG6051 - chr3R_35_27140001 chr3R_27140001 RAL-176 1844 chr3R 27221248 27221258 chr3R 27221338 27221348 4 90 3.0 2.5 2.8 1.1 100 chr3R 27221248 intergenic not near genes chr3R 27221298 intergenic not near genes chr3R 27221348 intergenic not near genes chr3R_4_27220001 chr3R_27220001 RAL-176 1845 chr3R 27300859 27300877 chr3R 27300951 27300955 7 90 3.0 4.0 3.5 1.6 96 chr3R 27300859 intron CG3339 - chr3R 27300907 intron CG3339 - chr3R 27300955 intron CG3339 - chr3R_7_27300001 chr3R_27300001 RAL-176 1846 chr3R 27303364 27303566 chr3R 27303454 27303652 8 87 3.5 24.0 13.8 0.5 288 chr3R 27303364 exon CG3339 - chr3R 27303508 intron CG3339 - chr3R 27303652 intron CG3339 - chr3R_8_27300001 chr3R_27300001 RAL-176 1847 chr3R 27327425 27327458 chr3R 27327504 27327534 18 78 4.0 5.0 4.5 3.3 109 chr3R 27327425 intergenic not near genes chr3R 27327480 intergenic not near genes chr3R 27327534 intergenic not near genes chr3R_18_27325001 chr3R_27325001 RAL-176 1848 chr3R 27329478 27329500 chr3R 27329552 27329573 7 75 2.5 2.5 2.5 2.0 95 chr3R 27329478 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329573 intergenic CG3330 - chr3R_7_27325001 chr3R_27325001 RAL-176 1849 chr3R 27335951 27335963 chr3R 27336029 27336044 5 78 4.0 0.0 2.0 1.7 93 chr3R 27335951 intergenic not near genes chr3R 27335998 intergenic not near genes chr3R 27336044 intergenic not near genes chr3R_5_27335001 chr3R_27335001 RAL-176 1850 chr3R 27342791 27342824 chr3R 27351372 27351405 Tirant 7 8581 2.0 2.0 2.0 2.3 8614 chr3R 27342791 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-176 1851 chr3R 27470881 27470917 chr3R 27470994 27471030 20 112 1.5 2.0 1.8 7.1 149 chr3R 27470881 intergenic not near genes chr3R 27470956 intergenic not near genes chr3R 27471030 intergenic not near genes chr3R_20_27470001 chr3R_27470001 RAL-176 1852 chr3R 27473767 27473798 chr3R 27474022 27474053 11 254 1.0 2.0 1.5 4.4 286 chr3R 27473767 intergenic not near genes chr3R 27473910 intergenic not near genes chr3R 27474053 intergenic not near genes chr3R_11_27470001 chr3R_27470001 RAL-176 1853 chr3R 27479156 27479179 chr3R 27479267 27479289 8 111 7.5 10.0 8.8 0.8 133 chr3R 27479156 exon Cyp6a18 + chr3R 27479222 exon Cyp6a18 + chr3R 27479289 exon Cyp6a18 + chr3R_8_27475001 chr3R_27475001 RAL-176 1854 chr3R 27496593 27496627 chr3R 27496698 27496732 6 105 4.5 4.0 4.2 1.2 139 chr3R 27496593 intergenic not near genes chr3R 27496662 intergenic not near genes chr3R 27496732 intergenic not near genes chr3R_6_27495001 chr3R_27495001 RAL-176 1855 chr3R 27595051 27595085 chr3R 27595134 27595168 14 83 3.5 5.0 4.2 2.7 117 chr3R 27595051 intron CG5639 - chr3R 27595110 intron CG5639 - chr3R 27595168 intron CG5639 - chr3R_14_27595001 chr3R_27595001 RAL-176 1856 chr3R 27685764 27685797 chr3R 27685842 27685875 4 76 8.0 3.0 5.5 0.6 111 chr3R 27685764 3` UTR CG31055 - chr3R 27685820 3` UTR CG31055 - chr3R 27685875 3` UTR CG31055 - chr3R_4_27685001 chr3R_27685001 RAL-176 1857 chr3R 27705358 27705391 chr3R 27705438 27705471 19 79 5.0 5.5 5.2 3.1 113 chr3R 27705358 exon CG12428 - chr3R 27705414 intron CG12428 - chr3R 27705471 exon CG12428 - chr3R_19_27705001 chr3R_27705001 RAL-176 1858 chr3R 27718579 27718598 chr3R 27718658 27718676 8 79 4.5 5.0 4.8 1.4 97 chr3R 27718579 intergenic not near genes chr3R 27718628 intergenic not near genes chr3R 27718676 intergenic not near genes chr3R_8_27715001 chr3R_27715001 RAL-176 1859 chr3R 27779273 27779282 chr3R 27779349 27779359 8 76 15.5 15.5 15.5 0.5 86 chr3R 27779273 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779359 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-176 1860 chr3R 27779284 27779289 chr3R 27779348 27779366 8 71 13.5 15.5 14.5 0.5 82 chr3R 27779284 exon CG34353 - chr3R 27779325 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-176 1861 chr3R 27786870 27786903 chr3R 27787015 27787039 16 143 7.5 6.0 6.8 2.1 169 chr3R 27786870 intron CG34353 - chr3R 27786954 intron CG34353 - chr3R 27787039 intron CG34353 - chr3R_16_27785001 chr3R_27785001 RAL-176 1862 chr3R 27799942 27799962 chr3R 27800023 27800044 11 81 3.0 6.5 4.8 1.9 102 chr3R 27799942 intron CG34353 - chr3R 27799993 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_11_27795001 chr3R_27795001 RAL-176 1863 chr3R 27840251 27840256 chr3R 27840373 27840377 5 122 0.0 0.0 0.0 5.0 126 chr3R 27840251 intron CG34353 - chr3R 27840314 intron CG34353 - chr3R 27840377 intron CG34353 - chr3R_5_27840001 chr3R_27840001 RAL-176 1864 chr3R 27856759 27856793 chr3R 27858241 27858276 hopper2 16 1481 6.0 5.0 5.5 2.5 1517 chr3R 27856759 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_16_27855001 chr3R_27855001 RAL-176 1865 chr3R 27862959 27862962 chr3R 27868264 27868267 Transpac 4 5305 5.5 3.0 4.2 0.8 5308 chr3R 27862959 intron CG34353 - chr3R 27865613 intron CG34353 - chr3R 27868267 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-176 1866 chr3R 27862964 27862984 chr3R 27868261 27868289 Transpac 4 5303 2.0 1.5 1.8 1.4 5325 chr3R 27862964 intron CG34353 - chr3R 27865626 intron CG34353 - chr3R 27868289 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-176 1867 chr3R 27870295 27870309 chr3R 27870378 27870392 8 83 14.5 7.0 10.8 0.7 97 chr3R 27870295 intron CG34353 - chr3R 27870344 intron CG34353 - chr3R 27870392 intron CG34353 - chr3R_8_27870001 chr3R_27870001 RAL-176 1868 chr3R 27870315 27870328 chr3R 27870391 27870411 4 79 6.0 9.5 7.8 0.5 96 chr3R 27870315 intron CG34353 - chr3R 27870363 intron CG34353 - chr3R 27870411 intron CG34353 - chr3R_4_27870001 chr3R_27870001 RAL-176 1869 chr3R 27875703 27875733 chr3R 27882758 27882788 297 9 7055 4.5 4.5 4.5 1.6 7085 chr3R 27875703 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-176 1870 chr3R 28054444 28054474 chr3R 28054520 28054549 21 75 6.0 5.5 5.8 3.1 105 chr3R 28054444 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054549 intron CG34362 + chr3R_21_28050001 chr3R_28050001 RAL-176 1871 chr3R 28068491 28068530 chr3R 28073933 28073972 I-element 14 5441 2.5 4.0 3.2 3.3 5481 chr3R 28068491 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073972 intron CG34362 + chr3R_14_28070001 chr3R_28070001 RAL-176 1872 chr3R 28173670 28173700 chr3R 28181100 28181130 mdg1 9 7430 3.5 3.5 3.5 2.0 7460 chr3R 28173670 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181130 intron CG34354 + chr3R_9_28175001 chr3R_28175001 RAL-176 1873 chr3R 28219228 28219237 chr3R 28219317 28219326 5 87 5.5 5.5 5.5 0.8 98 chr3R 28219228 intron CG34354 + chr3R 28219277 intron CG34354 + chr3R 28219326 intron CG34354 + chr3R_5_28215001 chr3R_28215001 RAL-176 1874 chr3R 28227631 28227660 chr3R 28227740 28227768 10 109 2.5 4.0 3.2 2.4 137 chr3R 28227631 intron CG34354 + chr3R 28227700 intron CG34354 + chr3R 28227768 intron CG34354 + chr3R_10_28225001 chr3R_28225001 RAL-176 1875 chr3R 21907534 21907535 chr3R 28240377 28240377 4 6332842 45.5 54.0 49.8 0.1 6332843 chr3R 21907534 intergenic CG6678 + chr3R 25073956 intron CG9996 - chr3R 28240377 3` UTR CG34354 + chr3R_4_25070001 chr3R_25070001 RAL-176 1876 chr3R 28253342 28253373 chr3R 28255848 28255883 jockey 28 2508 4.0 4.5 4.2 5.4 2541 chr3R 28253342 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_28_28250001 chr3R_28250001 RAL-176 1877 chr3R 28302102 28302135 chr3R 28302540 28302574 jockey 6 438 1.5 2.0 1.8 2.1 472 chr3R 28302102 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-176 1878 chr3R 28304630 28304653 chr3R 28304717 28304740 6 84 3.5 0.5 2.0 2.0 110 chr3R 28304630 intergenic CG12516 - chr3R 28304685 intergenic CG12516 - chr3R 28304740 intergenic CG12516 - chr3R_6_28300001 chr3R_28300001 RAL-176 1879 chr3R 28308071 28308080 chr3R 28308148 28308156 5 76 10.5 8.0 9.2 0.5 85 chr3R 28308071 intergenic not near genes chr3R 28308114 intergenic not near genes chr3R 28308156 intergenic not near genes chr3R_5_28305001 chr3R_28305001 RAL-176 1880 chr3R 28331498 28331511 chr3R 28331586 28331599 4 88 5.0 1.5 3.2 1.0 101 chr3R 28331498 intron larp - chr3R 28331548 intron larp - chr3R 28331599 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-176 1881 chr3R 28337694 28337726 chr3R 28337781 28337813 16 87 7.0 10.0 8.5 1.7 119 chr3R 28337694 intron Gfat2 - chr3R 28337754 intron Gfat2 - chr3R 28337813 intron Gfat2 - chr3R_16_28335001 chr3R_28335001 RAL-176 1882 chr3R 28344068 28344089 chr3R 28344145 28344151 10 74 6.0 21.0 13.5 0.7 83 chr3R 28344068 exon Moca-cyp + chr3R 28344110 exon Moca-cyp + chr3R 28344151 exon Moca-cyp + chr3R_10_28340001 chr3R_28340001 RAL-176 1883 chr3R 28344093 28344097 chr3R 28344137 28344163 5 68 6.5 17.5 12.0 0.4 70 chr3R 28344093 exon Moca-cyp + chr3R 28344128 exon Moca-cyp + chr3R 28344163 exon Moca-cyp + chr3R_5_28340001 chr3R_28340001 RAL-176 1884 chr3R 28352515 28352545 chr3R 28352854 28352885 17 340 0.0 8.5 4.2 3.3 370 chr3R 28352515 exon Or98b + chr3R 28352700 exon Or98b + chr3R 28352885 exon Or98b + chr3R_17_28350001 chr3R_28350001 RAL-176 1885 chr3R 28371969 28371996 chr3R 28372614 28372641 7 645 2.0 2.0 2.0 2.3 672 chr3R 28371969 intergenic not near genes chr3R 28372305 intergenic not near genes chr3R 28372641 intergenic not near genes chr3R_7_28370001 chr3R_28370001 RAL-176 1886 chr3R 28380812 28380826 chr3R 28381026 28381039 7 222 2.5 4.0 3.2 1.7 227 chr3R 28380812 intergenic not near genes chr3R 28380926 intergenic not near genes chr3R 28381039 intergenic not near genes chr3R_7_28380001 chr3R_28380001 RAL-176 1887 chr3R 28393701 28393732 chr3R 28393801 28393832 10 100 2.0 2.5 2.2 3.1 131 chr3R 28393701 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393832 intergenic not near genes chr3R_10_28390001 chr3R_28390001 RAL-176 1888 chr3R 28411119 28411139 chr3R 28411195 28411215 4 76 2.5 5.5 4.0 0.8 96 chr3R 28411119 intergenic not near genes chr3R 28411167 intergenic not near genes chr3R 28411215 intergenic not near genes chr3R_4_28410001 chr3R_28410001 RAL-176 1889 chr3R 28425191 28425220 chr3R 28425270 28425296 11 71 2.5 6.0 4.2 2.1 105 chr3R 28425191 intron beat-VI + chr3R 28425244 intron beat-VI + chr3R 28425296 intron beat-VI + chr3R_11_28425001 chr3R_28425001 RAL-176 1890 chr3R 28478422 28478434 chr3R 28478503 28478515 5 81 8.0 5.0 6.5 0.7 93 chr3R 28478422 intergenic not near genes chr3R 28478468 intergenic not near genes chr3R 28478515 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-176 1891 chr3R 28478436 28478446 chr3R 28478498 28478527 8 78 5.5 4.0 4.8 1.4 91 chr3R 28478436 intergenic not near genes chr3R 28478482 intergenic not near genes chr3R 28478527 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-176 1892 chr3R 28479147 28479164 chr3R 28479229 28479247 10 82 6.0 2.5 4.2 1.9 100 chr3R 28479147 intergenic not near genes chr3R 28479197 intergenic not near genes chr3R 28479247 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-176 1893 chr3R 28484353 28484374 chr3R 28486270 28486292 66 1918 52.0 103.5 77.8 0.8 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_66_28485001 chr3R_28485001 RAL-176 1894 chr3R 28585573 28585606 chr3R 28585685 28585719 41 116 164.5 177.5 171.0 0.2 146 chr3R 28585573 intergenic fkh -,MRE23 + chr3R 28585646 intergenic fkh -,MRE23 + chr3R 28585719 intergenic MRE23 +,fkh - chr3R_41_28585001 chr3R_28585001 RAL-176 1895 chr3R 28595366 28595398 chr3R 28595443 28595475 15 77 3.0 2.5 2.8 3.9 109 chr3R 28595366 intergenic not near genes chr3R 28595420 intergenic not near genes chr3R 28595475 intergenic not near genes chr3R_15_28595001 chr3R_28595001 RAL-176 1896 chr3R 28670627 28670648 chr3R 28670713 28670731 5 85 0.5 2.0 1.2 2.3 104 chr3R 28670627 intergenic CG9989 +,CG33346 + chr3R 28670679 intergenic CG9989 +,CG33346 + chr3R 28670731 5` UTR CG9989 + chr3R_5_28670001 chr3R_28670001 RAL-176 1897 chr3R 28736881 28736889 chr3R 28737098 28737106 10 217 17.0 7.5 12.2 0.8 225 chr3R 28736881 intergenic AstA-R2 - chr3R 28736994 intergenic AstA-R2 - chr3R 28737106 intergenic AstA-R2 - chr3R_10_28735001 chr3R_28735001 RAL-176 1898 chr3R 28736890 28736907 chr3R 28737096 28737118 9 212 9.0 7.0 8.0 1.0 228 chr3R 28736890 intergenic AstA-R2 - chr3R 28737004 intergenic AstA-R2 - chr3R 28737118 3` UTR AstA-R2 - chr3R_9_28735001 chr3R_28735001 RAL-176 1899 chr3R 28748021 28748043 chr3R 28748103 28748125 5 82 13.5 12.0 12.8 0.4 104 chr3R 28748021 intergenic CG10000 - chr3R 28748073 intergenic CG10000 - chr3R 28748125 intergenic CG10000 - chr3R_5_28745001 chr3R_28745001 RAL-176 1900 chr3R 28763904 28763921 chr3R 28771347 28771364 Stalker4 7 7443 0.0 0.5 0.2 5.8 7460 chr3R 28763904 intergenic not near genes chr3R 28767634 intergenic not near genes chr3R 28771364 intergenic not near genes chr3R_7_28765001 chr3R_28765001 RAL-176 1901 chr3R 28792871 28792903 chr3R 28797966 28797971 jockey 12 5091 6.0 2.0 4.0 2.4 5100 chr3R 28792871 intergenic not near genes chr3R 28795421 intergenic not near genes chr3R 28797971 intergenic not near genes chr3R_12_28795001 chr3R_28795001 RAL-176 1902 chr3R 21907534 21907536 chr3R 28831797 28831801 120 6924265 45.5 46.5 46.0 2.6 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_120_25365001 chr3R_25365001 RAL-176 1903 chr3R 21907534 21907536 chr3R 28831802 28831804 76 6924267 45.5 46.0 45.8 1.6 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_76_25365001 chr3R_25365001 RAL-176 1904 chr3R 28890217 28890254 chr3R 28890352 28890389 13 135 7.0 2.5 4.8 2.2 172 chr3R 28890217 intron Doa + chr3R 28890303 intron Doa + chr3R 28890389 intron Doa + chr3R_13_28890001 chr3R_28890001 RAL-176 1905 chr3R 28986290 28986297 chr3R 28986366 28986374 7 77 17.5 20.0 18.8 0.4 84 chr3R 28986290 intergenic not near genes chr3R 28986332 intergenic not near genes chr3R 28986374 intergenic not near genes chr3R_7_28985001 chr3R_28985001 RAL-176 1906 chr3R 21907534 21907536 chr3R 29013340 29013340 10 7105806 45.5 31.0 38.2 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_10_25460001 chr3R_25460001 RAL-176 1907 chr3R 29079398 29079408 chr3R 29080770 29080780 NOF 5 1371 0.0 1.5 0.8 2.8 1382 chr3R 29079398 intron CG11873 + chr3R 29080089 intron CG11873 + chr3R 29080780 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-176 1908 chr3R 29151946 29151966 chr3R 29152038 29152056 7 89 0.5 4.5 2.5 2.0 110 chr3R 29151946 intergenic Slbp -,ligatin - chr3R 29152001 intergenic Slbp -,ligatin - chr3R 29152056 intergenic Slbp -,ligatin - chr3R_7_29150001 chr3R_29150001 RAL-176 1909 chr3R 29182573 29182587 chr3R 29182649 29182663 8 76 0.0 3.5 1.8 2.9 90 chr3R 29182573 intron CG14509 - chr3R 29182618 intron CG14509 - chr3R 29182663 intron CG14509 - chr3R_8_29180001 chr3R_29180001 RAL-176 1910 chr3R 29213059 29213088 chr3R 29213142 29213169 13 83 5.0 8.0 6.5 1.7 110 chr3R 29213059 intergenic not near genes chr3R 29213114 intergenic not near genes chr3R 29213169 intergenic not near genes chr3R_13_29210001 chr3R_29210001 RAL-176 1911 chr3R 29237258 29237285 chr3R 29239279 29239306 15 2020 35.5 17.0 26.2 0.6 2048 chr3R 29237258 exon CG11951 - chr3R 29238282 intron CG11951 - chr3R 29239306 exon CG31427 - chr3R_15_29235001 chr3R_29235001 RAL-176 1912 chr3R 29238776 29238790 chr3R 29238890 29238897 8 113 2.0 3.5 2.8 2.1 121 chr3R 29238776 intergenic CG31427 -,CG11951 - chr3R 29238836 3` UTR CG31427 - chr3R 29238897 3` UTR CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-176 1913 chr3R 29239227 29239242 chr3R 29245518 29245528 6 6290 8.5 37.0 22.8 0.3 6301 chr3R 29239227 exon CG31427 - chr3R 29242378 exon CG31445 - chr3R 29245528 exon SP1029 - chr3R_6_29240001 chr3R_29240001 RAL-176 1914 chr3R 29237482 29237524 chr3R 29239406 29239432 4 1912 35.0 17.0 26.0 0.1 1950 chr3R 29237482 exon CG11951 - chr3R 29238457 intron CG11951 - chr3R 29239432 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-176 1915 chr3R 29256265 29256300 chr3R 29256345 29256380 20 79 7.5 5.5 6.5 2.7 115 chr3R 29256265 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256380 intergenic CG45544 + chr3R_20_29255001 chr3R_29255001 RAL-176 1916 chr3R 29351733 29351750 chr3R 29351817 29351835 7 84 5.0 3.0 4.0 1.4 102 chr3R 29351733 intergenic not near genes chr3R 29351784 intergenic not near genes chr3R 29351835 intergenic not near genes chr3R_7_29350001 chr3R_29350001 RAL-176 1917 chr3R 29402981 29402991 chr3R 29403076 29403086 4 95 4.5 2.0 3.2 1.0 105 chr3R 29402981 intron Ptp99A + chr3R 29403034 intron Ptp99A + chr3R 29403086 intron Ptp99A + chr3R_4_29400001 chr3R_29400001 RAL-176 1918 chr3R 29406615 29406649 chr3R 29407901 29407904 jockey 10 1283 5.5 5.0 5.2 1.6 1289 chr3R 29406615 intron Ptp99A + chr3R 29407260 intron Ptp99A + chr3R 29407904 intron Ptp99A + chr3R_10_29405001 chr3R_29405001 RAL-176 1919 chr3R 29429793 29429802 chr3R 29429868 29429877 6 76 3.5 1.5 2.5 1.7 84 chr3R 29429793 intron Ptp99A + chr3R 29429835 intron Ptp99A + chr3R 29429877 intron Ptp99A + chr3R_6_29425001 chr3R_29425001 RAL-176 1920 chr3R 29449361 29449387 chr3R 29449439 29449465 4 78 3.5 3.0 3.2 1.0 104 chr3R 29449361 intron Ptp99A + chr3R 29449413 intron Ptp99A + chr3R 29449465 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-176 1921 chr3R 29453755 29453784 chr3R 29453831 29453860 17 75 0.5 6.0 3.2 4.0 105 chr3R 29453755 intron Ptp99A + chr3R 29453808 intron Ptp99A + chr3R 29453860 intron Ptp99A + chr3R_17_29450001 chr3R_29450001 RAL-176 1922 chr3R 29472007 29472038 chr3R 29472100 29472128 15 92 2.0 5.5 3.8 3.1 121 chr3R 29472007 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472128 intron Ptp99A + chr3R_15_29470001 chr3R_29470001 RAL-176 1923 chr3R 29539434 29539456 chr3R 29539509 29539525 8 75 3.0 0.0 1.5 3.2 91 chr3R 29539434 intergenic not near genes chr3R 29539480 intergenic not near genes chr3R 29539525 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-176 1924 chr3R 29581552 29581568 chr3R 29581633 29581649 9 81 4.0 4.5 4.2 1.7 97 chr3R 29581552 intergenic not near genes chr3R 29581600 intergenic not near genes chr3R 29581649 intergenic not near genes chr3R_9_29580001 chr3R_29580001 RAL-176 1925 chr3R 29669508 29669520 chr3R 29669873 29669885 6 365 14.5 3.5 9.0 0.6 377 chr3R 29669508 exon ppk30 + chr3R 29669696 exon ppk30 + chr3R 29669885 exon ppk30 + chr3R_6_29665001 chr3R_29665001 RAL-176 1926 chr3R 29669521 29669540 chr3R 29669872 29669905 14 360 6.5 3.0 4.8 2.4 384 chr3R 29669521 exon ppk30 + chr3R 29669713 exon ppk30 + chr3R 29669905 exon ppk30 + chr3R_14_29665001 chr3R_29665001 RAL-176 1927 chr3R 29708567 29708590 chr3R 29708632 29708655 7 71 1.5 5.0 3.2 1.7 88 chr3R 29708567 intergenic not near genes chr3R 29708611 intergenic not near genes chr3R 29708655 intergenic not near genes chr3R_7_29705001 chr3R_29705001 RAL-176 1928 chr3R 29738264 29738299 chr3R 29739731 29739766 hobo 15 1465 2.0 5.0 3.5 3.3 1502 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739015 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_15_29735001 chr3R_29735001 RAL-176 1929 chr3R 29758944 29758971 chr3R 29759016 29759049 14 77 3.5 6.0 4.8 2.4 105 chr3R 29758944 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_14_29755001 chr3R_29755001 RAL-176 1930 chr3R 29760374 29760390 chr3R 29761575 29761591 pogo 4 1200 0.5 2.0 1.2 1.8 1217 chr3R 29760374 intergenic not near genes chr3R 29760982 intergenic not near genes chr3R 29761591 intergenic not near genes chr3R_4_29760001 chr3R_29760001 RAL-176 1931 chr3R 29768478 29768492 chr3R 29768566 29768584 4 90 0.5 0.0 0.2 3.3 106 chr3R 29768478 intron kay + chr3R 29768531 intron kay + chr3R 29768584 intron kay + chr3R_4_29765001 chr3R_29765001 RAL-176 1932 chr3R 29882023 29882049 chr3R 29891180 29891206 roo 10 9156 5.5 8.0 6.8 1.3 9183 chr3R 29882023 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_10_29885001 chr3R_29885001 RAL-176 1933 chr3R 29927541 29927572 chr3R 29927620 29927650 9 75 6.0 10.0 8.0 1.0 109 chr3R 29927541 5` UTR CG15522 + chr3R 29927596 5` UTR CG15522 + chr3R 29927650 5` UTR CG15522 + chr3R_9_29925001 chr3R_29925001 RAL-176 1934 chr3R 29963479 29963510 chr3R 29963581 29963607 16 100 5.5 3.5 4.5 2.9 128 chr3R 29963479 intron TkR99D - chr3R 29963543 intron TkR99D - chr3R 29963607 intron TkR99D - chr3R_16_29960001 chr3R_29960001 RAL-176 1935 chr3R 29982997 29983028 chr3R 29983125 29983153 14 126 4.0 4.0 4.0 2.8 156 chr3R 29982997 intergenic CG7896 + chr3R 29983075 intergenic CG7896 + chr3R 29983153 intergenic CG7896 + chr3R_14_29980001 chr3R_29980001 RAL-176 1936 chr3R 30026966 30026975 chr3R 30027042 30027042 8 76 6.5 0.0 3.2 1.9 76 chr3R 30026966 intron Axn + chr3R 30027004 intron Axn + chr3R 30027042 intron Axn + chr3R_8_30025001 chr3R_30025001 RAL-176 1937 chr3R 30032162 30032183 chr3R 30032239 30032254 17 78 12.5 4.5 8.5 1.8 92 chr3R 30032162 intron Axn + chr3R 30032208 intron Axn + chr3R 30032254 intron Axn + chr3R_17_30030001 chr3R_30030001 RAL-176 1938 chr3R 30050300 30050320 chr3R 30050407 30050427 15 107 11.5 5.5 8.5 1.6 127 chr3R 30050300 intron,intron CG15528 -,CR44046 + chr3R 30050364 intron,intron CG15528 -,CR44046 + chr3R 30050427 intron,intron CG15528 -,CR44046 + chr3R_15_30050001 chr3R_30050001 RAL-176 1939 chr3R 30084856 30084881 chr3R 30086319 30086337 hobo 15 1465 9.0 9.0 9.0 1.5 1481 chr3R 30084856 intron sima + chr3R 30085596 intron sima + chr3R 30086337 intron sima + chr3R_15_30085001 chr3R_30085001 RAL-176 1940 chr3R 30177742 30177772 chr3R 30177859 30177889 10 116 4.0 5.0 4.5 1.8 147 chr3R 30177742 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177889 5` UTR CG15530 + chr3R_10_30175001 chr3R_30175001 RAL-176 1941 chr3R 30181103 30181136 chr3R 30181178 30181208 11 73 2.5 5.5 4.0 2.2 105 chr3R 30181103 3` UTR Bet5 + chr3R 30181156 3` UTR Bet5 + chr3R 30181208 3` UTR Bet5 + chr3R_11_30180001 chr3R_30180001 RAL-176 1942 chr3R 30183218 30183234 chr3R 30183327 30183343 5 109 2.5 2.0 2.2 1.6 125 chr3R 30183218 intergenic not near genes chr3R 30183280 intergenic not near genes chr3R 30183343 intergenic not near genes chr3R_5_30180001 chr3R_30180001 RAL-176 1943 chr3R 30224658 30224673 chr3R 30224736 30224750 9 78 4.0 7.0 5.5 1.4 92 chr3R 30224658 intergenic not near genes chr3R 30224704 intergenic not near genes chr3R 30224750 intergenic not near genes chr3R_9_30220001 chr3R_30220001 RAL-176 1944 chr3R 30260368 30260397 chr3R 30260444 30260473 14 76 3.0 5.0 4.0 2.8 105 chr3R 30260368 intergenic not near genes chr3R 30260420 intergenic not near genes chr3R 30260473 intergenic not near genes chr3R_14_30260001 chr3R_30260001 RAL-176 1945 chr3R 30268415 30268448 chr3R 30268496 30268529 12 80 3.5 8.0 5.8 1.8 114 chr3R 30268415 intergenic not near genes chr3R 30268472 intergenic not near genes chr3R 30268529 intergenic not near genes chr3R_12_30265001 chr3R_30265001 RAL-176 1946 chr3R 30287773 30287778 chr3R 30287856 30287859 6 82 6.0 1.0 3.5 1.3 86 chr3R 30287773 intron hdc + chr3R 30287816 intron hdc + chr3R 30287859 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-176 1947 chr3R 30317325 30317356 chr3R 30324917 30324948 roo 14 7591 0.5 2.0 1.2 6.4 7623 chr3R 30317325 intron hdc + chr3R 30321136 intron hdc + chr3R 30324948 intron hdc + chr3R_14_30320001 chr3R_30320001 RAL-176 1948 chr3R 30330515 30330525 chr3R 30330571 30330605 9 69 5.5 4.5 5.0 1.5 90 chr3R 30330515 intron hdc + chr3R 30330560 intron hdc + chr3R 30330605 intron hdc + chr3R_9_30330001 chr3R_30330001 RAL-176 1949 chr3R 30445507 30445543 chr3R 30445598 30445635 10 92 4.0 1.0 2.5 2.9 128 chr3R 30445507 intergenic aralar1 -,Osi23 - chr3R 30445571 intergenic aralar1 - chr3R 30445635 3` UTR aralar1 - chr3R_10_30445001 chr3R_30445001 RAL-176 1950 chr3R 30448113 30448137 chr3R 30448191 30448215 5 78 2.0 0.0 1.0 2.5 102 chr3R 30448113 intron aralar1 - chr3R 30448164 intron aralar1 - chr3R 30448215 intron aralar1 - chr3R_5_30445001 chr3R_30445001 RAL-176 1951 chr3R 30456393 30456423 chr3R 30456472 30456503 9 79 0.0 4.5 2.2 2.8 110 chr3R 30456393 intergenic CG2224 - chr3R 30456448 3` UTR CG2224 - chr3R 30456503 3` UTR CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-176 1952 chr3R 30458014 30458044 chr3R 30458092 30458123 8 79 3.0 2.0 2.5 2.3 109 chr3R 30458014 intron CG2224 - chr3R 30458068 intron CG2224 - chr3R 30458123 intron CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-176 1953 chr3R 30480474 30480509 chr3R 30482942 30482977 jockey 22 2467 6.0 9.0 7.5 2.6 2503 chr3R 30480474 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482977 intron PH4alphaEFB + chr3R_22_30480001 chr3R_30480001 RAL-176 1954 chr3R 30544731 30544760 chr3R 30544822 30544852 12 91 4.5 5.5 5.0 2.0 121 chr3R 30544731 intron tmod + chr3R 30544792 intron tmod + chr3R 30544852 intron tmod + chr3R_12_30540001 chr3R_30540001 RAL-176 1955 chr3R 30627602 30627638 chr3R 30627682 30627718 20 78 3.0 4.5 3.8 4.2 116 chr3R 30627602 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_20_30625001 chr3R_30625001 RAL-176 1956 chr3R 30679518 30679552 chr3R 30686987 30687021 blood 8 7468 2.5 6.0 4.2 1.5 7503 chr3R 30679518 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-176 1957 chr3R 30818809 30818844 chr3R 30820374 30820409 1360 11 1565 3.0 4.0 3.5 2.4 1600 chr3R 30818809 intron cindr + chr3R 30819609 intron cindr + chr3R 30820409 intron cindr + chr3R_11_30815001 chr3R_30815001 RAL-176 1958 chr3R 30850242 30850268 chr3R 30850334 30850360 4 92 2.5 1.5 2.0 1.3 118 chr3R 30850242 intergenic not near genes chr3R 30850301 intergenic not near genes chr3R 30850360 intergenic not near genes chr3R_4_30850001 chr3R_30850001 RAL-176 1959 chr3R 30948074 30948108 chr3R 30948265 30948299 26 191 6.0 5.0 5.5 4.0 225 chr3R 30948074 intergenic not near genes chr3R 30948186 intergenic not near genes chr3R 30948299 intergenic not near genes chr3R_26_30945001 chr3R_30945001 RAL-176 1960 chr3R 30950080 30950111 chr3R 30950202 30950233 21 121 4.0 7.0 5.5 3.2 153 chr3R 30950080 intergenic not near genes chr3R 30950156 intergenic not near genes chr3R 30950233 intergenic not near genes chr3R_21_30950001 chr3R_30950001 RAL-176 1961 chr3R 30973133 30973162 chr3R 30973293 30973322 12 160 4.0 3.5 3.8 2.5 189 chr3R 30973133 intron 5-HT7 - chr3R 30973228 intron 5-HT7 - chr3R 30973322 intron 5-HT7 - chr3R_12_30970001 chr3R_30970001 RAL-176 1962 chr3R 30982596 30982625 chr3R 30982686 30982717 7 88 1.0 1.5 1.2 3.2 121 chr3R 30982596 intron 5-HT7 - chr3R 30982656 intron 5-HT7 - chr3R 30982717 intron 5-HT7 - chr3R_7_30980001 chr3R_30980001 RAL-176 1963 chr3R 30996634 30996661 chr3R 30996858 30996883 9 223 6.0 3.5 4.8 1.6 249 chr3R 30996634 intron 5-HT7 - chr3R 30996758 intron 5-HT7 - chr3R 30996883 intron 5-HT7 - chr3R_9_30995001 chr3R_30995001 RAL-176 1964 chr3R 30996982 30996997 chr3R 30997074 30997089 6 91 4.0 3.5 3.8 1.2 107 chr3R 30996982 intron 5-HT7 - chr3R 30997036 intron 5-HT7 - chr3R 30997089 intron 5-HT7 - chr3R_6_30995001 chr3R_30995001 RAL-176 1965 chr3R 31042115 31042143 chr3R 31042202 31042230 18 87 3.5 6.0 4.8 3.1 115 chr3R 31042115 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_18_31040001 chr3R_31040001 RAL-176 1966 chr3R 31074227 31074258 chr3R 31081827 31081858 springer 19 7600 12.0 4.5 8.2 2.1 7631 chr3R 31074227 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081858 intron Sox100B + chr3R_19_31075001 chr3R_31075001 RAL-176 1967 chr3R 31137155 31137181 chr3R 31137235 31137261 7 79 3.0 2.0 2.5 2.0 106 chr3R 31137155 intron Gycbeta100B + chr3R 31137208 intron Gycbeta100B + chr3R 31137261 intron Gycbeta100B + chr3R_7_31135001 chr3R_31135001 RAL-176 1968 chr3R 31146748 31146782 chr3R 31146825 31146860 17 77 3.0 3.0 3.0 4.2 112 chr3R 31146748 intron Gycbeta100B + chr3R 31146804 intron Gycbeta100B + chr3R 31146860 intron Gycbeta100B + chr3R_17_31145001 chr3R_31145001 RAL-176 1969 chr3R 31245771 31245797 chr3R 31245858 31245883 10 82 4.5 3.0 3.8 2.1 112 chr3R 31245771 intron qless - chr3R 31245827 intron qless - chr3R 31245883 intron qless - chr3R_10_31245001 chr3R_31245001 RAL-176 1970 chr3R 31270900 31270918 chr3R 31270981 31270982 6 78 8.0 0.0 4.0 1.2 82 chr3R 31270900 intergenic not near genes chr3R 31270941 intergenic not near genes chr3R 31270982 intergenic not near genes chr3R_6_31270001 chr3R_31270001 RAL-176 1971 chr3R 31279375 31279389 chr3R 31285566 31285568 diver 6 6188 9.5 7.0 8.2 0.7 6193 chr3R 31279375 intergenic not near genes chr3R 31282472 intergenic not near genes chr3R 31285568 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-176 1972 chr3R 31279390 31279409 chr3R 31285565 31285568 diver 15 6181 7.0 6.5 6.8 1.9 6178 chr3R 31279390 intergenic not near genes chr3R 31282479 intergenic not near genes chr3R 31285568 intergenic not near genes chr3R_15_31280001 chr3R_31280001 RAL-176 1973 chr3R 31413090 31413105 chr3R 31418290 31418297 copia 10 5199 5.0 0.0 2.5 2.9 5207 chr3R 31413090 intron Gprk2 + chr3R 31415694 intron Gprk2 + chr3R 31418297 intron Gprk2 + chr3R_10_31415001 chr3R_31415001 RAL-176 1974 chr3R 31413107 31413121 chr3R 31418288 31418320 copia 9 5195 3.0 0.0 1.5 3.6 5213 chr3R 31413107 intron Gprk2 + chr3R 31415714 intron Gprk2 + chr3R 31418320 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-176 1975 chr3R 31426876 31426891 chr3R 31426968 31426983 4 92 3.5 2.5 3.0 1.0 107 chr3R 31426876 intron Gprk2 + chr3R 31426930 intron Gprk2 + chr3R 31426983 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-176 1976 chr3R 31430727 31430741 chr3R 31430812 31430827 5 87 3.0 6.0 4.5 0.9 100 chr3R 31430727 intron Gprk2 + chr3R 31430777 intron Gprk2 + chr3R 31430827 intron Gprk2 + chr3R_5_31430001 chr3R_31430001 RAL-176 1977 chr3R 31435362 31435550 chr3R 31435514 31435812 13 168 5.5 3.5 4.5 2.4 450 chr3R 31435362 intron Gprk2 + chr3R 31435587 intron Gprk2 + chr3R 31435812 intron Gprk2 + chr3R_13_31435001 chr3R_31435001 RAL-176 1978 chr3R 31435558 31435577 chr3R 31435819 31435835 9 257 5.0 6.0 5.5 1.4 277 chr3R 31435558 intron Gprk2 + chr3R 31435696 intron Gprk2 + chr3R 31435835 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-176 1979 chr3R 31530834 31530849 chr3R 31531143 31531175 11 316 2.0 3.0 2.5 3.1 341 chr3R 31530834 intergenic not near genes chr3R 31531004 intergenic not near genes chr3R 31531175 intergenic not near genes chr3R_11_31530001 chr3R_31530001 RAL-176 1980 chr3R 31538486 31538522 chr3R 31538564 31538600 13 78 2.5 3.0 2.8 3.4 114 chr3R 31538486 intergenic not near genes chr3R 31538543 intergenic not near genes chr3R 31538600 intergenic not near genes chr3R_13_31535001 chr3R_31535001 RAL-176 1981 chr3R 31610117 31610146 chr3R 31610201 31610232 19 85 3.5 4.0 3.8 4.0 115 chr3R 31610117 intron CycG - chr3R 31610174 intron CycG - chr3R 31610232 intron CycG - chr3R_19_31610001 chr3R_31610001 RAL-176 1982 chr3R 31691543 31691558 chr3R 31696309 31696320 Doc 7 4765 6.5 15.0 10.8 0.6 4777 chr3R 31691543 intergenic not near genes chr3R 31693932 intergenic not near genes chr3R 31696320 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-176 1983 chr3R 31699735 31699753 chr3R 31699807 31699835 6 78 5.5 5.5 5.5 0.9 100 chr3R 31699735 intergenic not near genes chr3R 31699785 intergenic not near genes chr3R 31699835 intergenic not near genes chr3R_6_31695001 chr3R_31695001 RAL-176 1984 chr3R 31769166 31769196 chr3R 31769282 31769312 8 116 2.0 1.5 1.8 2.9 146 chr3R 31769166 5` UTR pncr017:3R + chr3R 31769239 5` UTR pncr017:3R + chr3R 31769312 5` UTR,3` UTR pncr017:3R +,CG2135 - chr3R_8_31765001 chr3R_31765001 RAL-176 1985 chr3R 31831535 31831570 chr3R 31831614 31831649 33 78 5.0 10.0 7.5 3.9 114 chr3R 31831535 intron RhoGAP100F + chr3R 31831592 intron RhoGAP100F + chr3R 31831649 intron RhoGAP100F + chr3R_33_31830001 chr3R_31830001 RAL-176 1986 chr3R 31861143 31861157 chr3R 31861221 31861234 4 78 2.0 4.5 3.2 1.0 91 chr3R 31861143 intron heph - chr3R 31861188 intron heph - chr3R 31861234 intron heph - chr3R_4_31860001 chr3R_31860001 RAL-176 1987 chr3R 31878630 31878650 chr3R 31878715 31878748 8 94 3.5 5.0 4.2 1.5 118 chr3R 31878630 intron heph - chr3R 31878689 intron heph - chr3R 31878748 intron heph - chr3R_8_31875001 chr3R_31875001 RAL-176 1988 chr3R 31881290 31881325 chr3R 31881370 31881395 14 82 4.5 3.5 4.0 2.8 105 chr3R 31881290 intron heph - chr3R 31881342 intron heph - chr3R 31881395 intron heph - chr3R_14_31880001 chr3R_31880001 RAL-176 1989 chr3R 31886112 31886143 chr3R 31886188 31886222 19 78 3.5 7.0 5.2 3.1 110 chr3R 31886112 intron heph - chr3R 31886167 intron heph - chr3R 31886222 intron heph - chr3R_19_31885001 chr3R_31885001 RAL-176 1990 chr3R 31901302 31901329 chr3R 31901371 31901406 9 75 3.5 7.5 5.5 1.4 104 chr3R 31901302 intron heph - chr3R 31901354 intron heph - chr3R 31901406 intron heph - chr3R_9_31900001 chr3R_31900001 RAL-176 1991 chr3R 31911678 31911706 chr3R 31911764 31911792 8 86 4.5 2.5 3.5 1.8 114 chr3R 31911678 intron heph - chr3R 31911735 intron heph - chr3R 31911792 intron heph - chr3R_8_31910001 chr3R_31910001 RAL-176 1992 chr3R 31918889 31918922 chr3R 31918980 31919012 16 91 4.5 4.5 4.5 2.9 123 chr3R 31918889 intron heph - chr3R 31918950 intron heph - chr3R 31919012 intron heph - chr3R_16_31915001 chr3R_31915001 RAL-176 1993 chr3R 31924599 31924606 chr3R 31924680 31924687 4 80 0.0 5.0 2.5 1.1 88 chr3R 31924599 intron heph - chr3R 31924643 intron heph - chr3R 31924687 intron heph - chr3R_4_31920001 chr3R_31920001 RAL-176 1994 chr3R 31931193 31931215 chr3R 31931276 31931298 11 83 1.0 2.5 1.8 3.9 105 chr3R 31931193 intron heph - chr3R 31931246 intron heph - chr3R 31931298 intron heph - chr3R_11_31930001 chr3R_31930001 RAL-176 1995 chr3R 31935862 31935896 chr3R 31935939 31935972 11 77 1.0 8.5 4.8 1.9 110 chr3R 31935862 intron heph - chr3R 31935917 intron heph - chr3R 31935972 intron heph - chr3R_11_31935001 chr3R_31935001 RAL-176 1996 chr3R 31997996 31998023 chr3R 32005466 32005493 blood 7 7470 3.5 5.0 4.2 1.3 7497 chr3R 31997996 intron heph - chr3R 32001744 intron heph - chr3R 32005493 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-176 1997 chr3R 32016709 32016736 chr3R 32016788 32016815 5 79 1.0 4.0 2.5 1.4 106 chr3R 32016709 5` UTR CR45557 + chr3R 32016762 5` UTR CR45557 + chr3R 32016815 5` UTR CR45557 + chr3R_5_32015001 chr3R_32015001 RAL-176 1998 chr3R 32022323 32022355 chr3R 32022425 32022456 8 100 6.0 4.0 5.0 1.3 133 chr3R 32022323 5` UTR CR45557 + chr3R 32022390 5` UTR CR45557 + chr3R 32022456 5` UTR CR45557 + chr3R_8_32020001 chr3R_32020001 RAL-176 1999 chr4 319988 320004 chr4 328164 328180 Stalker2 7 8176 2.0 0.5 1.2 3.2 8192 chr4 319988 3` UTR CG32850 + chr4 324084 intron CG32850 + chr4 328180 3` UTR CG32850 + chr4_7_320001 chr4_320001 RAL-176 2000 chr4 671620 671633 chr4 680192 680216 Tirant 6 8580 1.0 5.0 3.0 1.5 8596 chr4 671620 intron CG11360 + chr4 675918 intron CG11360 + chr4 680216 intron CG11360 + chr4_6_675001 chr4_675001 RAL-176 2001 chrX 550756 550788 chrX 551336 551368 9 575 3.0 3.0 3.0 2.2 612 chrX 550756 intron Appl + chrX 551062 intron Appl + chrX 551368 intron Appl + chrX_9_550001 chrX_550001 RAL-176 2002 chrX 551421 551452 chrX 558983 559014 412 13 7560 7.0 5.5 6.2 1.8 7593 chrX 551421 intron Appl + chrX 555218 intron Appl + chrX 559014 intron Appl + chrX_13_555001 chrX_555001 RAL-176 2003 chrX 726083 726118 chrX 726167 726202 14 74 1.0 4.0 2.5 4.0 119 chrX 726083 intron sdk + chrX 726142 intron sdk + chrX 726202 intron sdk + chrX_14_725001 chrX_725001 RAL-176 2004 chrX 802300 802321 chrX 802368 802398 17 73 7.5 9.5 8.5 1.8 98 chrX 802300 exon CG13359 - chrX 802349 exon CG13359 - chrX 802398 exon CG13359 - chrX_17_800001 chrX_800001 RAL-176 2005 chrX 827599 827633 chrX 835391 835408 roo 10 7787 5.0 0.0 2.5 2.9 7809 chrX 827599 intron CG43867 - chrX 831504 intron CG43867 - chrX 835408 intron CG43867 - chrX_10_830001 chrX_830001 RAL-176 2006 chrX 906701 906733 chrX 908490 908522 S-element 16 1788 9.0 7.5 8.2 1.7 1821 chrX 906701 intron CG43867 - chrX 907612 intron CG43867 - chrX 908522 intron CG43867 - chrX_16_905001 chrX_905001 RAL-176 2007 chrX 1053117 1053120 chrX 16983076 16983076 7 15929958 26.5 8.5 17.5 0.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_7_9015001 chrX_9015001 RAL-176 2008 chrX 1357773 1357808 chrX 1367943 1367978 Doc 16 10169 4.0 3.5 3.8 3.3 10205 chrX 1357773 intergenic png - chrX 1362876 intergenic not near genes chrX 1367978 intergenic not near genes chrX_16_1360001 chrX_1360001 RAL-176 2009 chrX 1430647 1430660 chrX 1430945 1430958 5 295 13.0 5.5 9.2 0.5 311 chrX 1430647 intron futsch + chrX 1430802 intron futsch + chrX 1430958 intron futsch + chrX_5_1430001 chrX_1430001 RAL-176 2010 chrX 1518035 1518074 chrX 1523437 1523447 jockey 14 5399 5.5 4.5 5.0 2.3 5412 chrX 1518035 intergenic inc + chrX 1520741 intergenic not near genes chrX 1523447 intergenic not near genes chrX_14_1520001 chrX_1520001 RAL-176 2011 chrX 1627972 1628002 chrX 1635440 1635470 gtwin 31 7467 13.5 12.0 12.8 2.2 7498 chrX 1627972 intron,intron Mur2B -,br + chrX 1631721 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_31_1630001 chrX_1630001 RAL-176 2012 chrX 1954887 1954916 chrX 1962826 1962839 Stalker2 7 7934 3.5 2.0 2.8 1.8 7952 chrX 1954887 intron Hr4 + chrX 1958863 intron Hr4 + chrX 1962839 intron Hr4 + chrX_7_1955001 chrX_1955001 RAL-176 2013 chrX 1982795 1982827 chrX 1982900 1982932 34 104 6.5 8.5 7.5 4.0 137 chrX 1982795 intron Hr4 + chrX 1982864 intron Hr4 + chrX 1982932 intron Hr4 + chrX_34_1980001 chrX_1980001 RAL-176 2014 chrX 2028765 2028770 chrX 13383568 13383569 4 11354803 18.0 13.0 15.5 0.2 11354804 chrX 2028765 intron Actn - chrX 7706167 intron CHES-1-like - chrX 13383569 intron Rbp1-like - chrX_4_7705001 chrX_7705001 RAL-176 2015 chrX 2053405 2053430 chrX 2053479 2053509 9 77 3.0 2.5 2.8 2.4 104 chrX 2053405 intron CG4313 + chrX 2053457 intron CG4313 + chrX 2053509 intron CG4313 + chrX_9_2050001 chrX_2050001 RAL-176 2016 chrX 2254468 2254472 chrX 2254544 2254548 4 76 6.5 0.5 3.5 0.9 80 chrX 2254468 3` UTR CG3078 - chrX 2254508 3` UTR CG3078 - chrX 2254548 3` UTR CG3078 - chrX_4_2250001 chrX_2250001 RAL-176 2017 chrX 2397921 2397929 chrX 2398015 2398023 5 94 4.5 0.0 2.2 1.6 102 chrX 2397921 intergenic not near genes chrX 2397972 intergenic not near genes chrX 2398023 intergenic not near genes chrX_5_2395001 chrX_2395001 RAL-176 2018 chrX 2399835 2399867 chrX 2408188 2408220 roo 11 8351 11.0 9.5 10.2 1.0 8385 chrX 2399835 intergenic not near genes chrX 2404028 intergenic not near genes chrX 2408220 intergenic not near genes chrX_11_2400001 chrX_2400001 RAL-176 2019 chrX 2506959 2506963 chrX 2507047 2507049 5 89 4.5 5.5 5.0 0.8 90 chrX 2506959 intron trol - chrX 2507004 intron trol - chrX 2507049 intron trol - chrX_5_2505001 chrX_2505001 RAL-176 2020 chrX 2544029 2544056 chrX 2544366 2544394 28 337 6.0 10.0 8.0 3.1 365 chrX 2544029 intron trol - chrX 2544212 intron trol - chrX 2544394 intron trol - chrX_28_2540001 chrX_2540001 RAL-176 2021 chrX 2578816 2578846 chrX 2578920 2578950 9 103 4.0 5.5 4.8 1.6 134 chrX 2578816 intergenic Pdfr +,Vha36-3 - chrX 2578883 intergenic Vha36-3 -,Pdfr + chrX 2578950 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-176 2022 chrX 2610383 2610396 chrX 2617500 2617513 HMS-Beagle 4 7117 18.0 4.0 11.0 0.3 7130 chrX 2610383 intergenic CG8636 - chrX 2613948 intergenic not near genes chrX 2617513 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-176 2023 chrX 2635376 2635399 chrX 2635485 2635498 8 107 2.5 8.5 5.5 1.2 122 chrX 2635376 intron sgg + chrX 2635437 intron sgg + chrX 2635498 intron sgg + chrX_8_2635001 chrX_2635001 RAL-176 2024 chrX 2880035 2880067 chrX 2880121 2880153 41 85 7.5 12.5 10.0 3.7 118 chrX 2880035 intron kirre + chrX 2880094 intron kirre + chrX 2880153 intron kirre + chrX_41_2880001 chrX_2880001 RAL-176 2025 chrX 2888113 2888147 chrX 2888191 2888224 19 77 4.5 1.5 3.0 4.8 111 chrX 2888113 intron kirre + chrX 2888168 intron kirre + chrX 2888224 intron kirre + chrX_19_2885001 chrX_2885001 RAL-176 2026 chrX 2912172 2912172 chrX 16983076 16983077 9 14070904 35.0 8.5 21.8 0.4 14070905 chrX 2912172 intron kirre + chrX 9947624 intergenic not near genes chrX 16983077 intron CG45002 - chrX_9_9945001 chrX_9945001 RAL-176 2027 chrX 2917756 2917782 chrX 2917890 2917921 11 138 2.5 5.5 4.0 2.2 165 chrX 2917756 intron kirre + chrX 2917838 intron kirre + chrX 2917921 intron kirre + chrX_11_2915001 chrX_2915001 RAL-176 2028 chrX 2932229 2932251 chrX 2932312 2932333 10 82 3.0 4.5 3.8 2.1 104 chrX 2932229 intron,exon kirre +,CG32793 + chrX 2932281 intron,exon kirre +,CG32793 + chrX 2932333 intron,exon kirre +,CG32793 + chrX_10_2930001 chrX_2930001 RAL-176 2029 chrX 3058020 3058042 chrX 3058261 3058283 pogo 6 241 3.0 0.5 1.8 2.1 263 chrX 3058020 intron kirre + chrX 3058152 intron kirre + chrX 3058283 intron kirre + chrX_6_3055001 chrX_3055001 RAL-176 2030 chrX 3067945 3067967 chrX 3068033 3068056 14 88 1.5 7.0 4.2 2.7 111 chrX 3067945 intron kirre + chrX 3068000 intron kirre + chrX 3068056 intron kirre + chrX_14_3065001 chrX_3065001 RAL-176 2031 chrX 3075633 3075663 chrX 3080939 3080969 Transpac 5 5306 2.5 3.0 2.8 1.3 5336 chrX 3075633 intron kirre + chrX 3078301 intron kirre + chrX 3080969 intron kirre + chrX_5_3075001 chrX_3075001 RAL-176 2032 chrX 3109446 3109470 chrX 3109523 3109547 12 76 2.0 4.0 3.0 3.0 101 chrX 3109446 intron kirre + chrX 3109496 intron kirre + chrX 3109547 intron kirre + chrX_12_3105001 chrX_3105001 RAL-176 2033 chrX 3203463 3203487 chrX 3203662 3203686 10 199 5.0 3.0 4.0 2.0 223 chrX 3203463 intron dnc + chrX 3203574 intron dnc + chrX 3203686 intron dnc + chrX_10_3200001 chrX_3200001 RAL-176 2034 chrX 3306059 3306354 chrX 3306170 3306436 14 102 3.0 4.5 3.8 2.9 377 chrX 3306059 intron dnc + chrX 3306248 intron dnc + chrX 3306436 intron dnc + chrX_14_3305001 chrX_3305001 RAL-176 2035 chrX 3408985 3409016 chrX 3409060 3409093 10 76 0.0 3.0 1.5 4.0 108 chrX 3408985 intron,intron CR44999 +,CG12535 - chrX 3409039 intron,intron CR44999 +,CG12535 - chrX 3409093 intron,intron CR44999 +,CG12535 - chrX_10_3405001 chrX_3405001 RAL-176 2036 chrX 3415025 3415051 chrX 3421207 3421235 3S18 9 6182 1.5 4.0 2.8 2.4 6210 chrX 3415025 intron,intron CR44999 +,CG12535 - chrX 3418130 intron,intron CR44999 +,CG12535 - chrX 3421235 intron,intron CR44999 +,CG12535 - chrX_9_3415001 chrX_3415001 RAL-176 2037 chrX 3493090 3493123 chrX 3502249 3502282 roo 9 9158 3.0 2.0 2.5 2.6 9192 chrX 3493090 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502282 intron,intron CR44999 +,Gas8 - chrX_9_3495001 chrX_3495001 RAL-176 2038 chrX 3535409 3535423 chrX 3535499 3535514 5 91 3.5 2.5 3.0 1.2 105 chrX 3535409 intron CG32791 - chrX 3535462 intron CG32791 - chrX 3535514 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-176 2039 chrX 3597553 3597578 chrX 3619721 3619745 roo 10 22168 3.5 5.0 4.2 1.9 22192 chrX 3597553 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619745 intron AstA-R1 + chrX_10_3605001 chrX_3605001 RAL-176 2040 chrX 3620467 3620487 chrX 3620566 3620586 8 99 3.0 4.0 3.5 1.8 119 chrX 3620467 intron AstA-R1 + chrX 3620526 intron AstA-R1 + chrX 3620586 intron AstA-R1 + chrX_8_3620001 chrX_3620001 RAL-176 2041 chrX 3726777 3726794 chrX 3730156 3730190 NOF 5 3389 6.5 0.0 3.2 1.2 3413 chrX 3726777 intron tlk + chrX 3728484 intron tlk + chrX 3730190 intron tlk + chrX_5_3725001 chrX_3725001 RAL-176 2042 chrX 3842331 3842353 chrX 3842572 3842594 pogo 7 241 3.5 4.5 4.0 1.4 263 chrX 3842331 intron ec + chrX 3842462 intron ec + chrX 3842594 intron ec + chrX_7_3840001 chrX_3840001 RAL-176 2043 chrX 3866106 3866132 chrX 3866182 3866209 12 77 2.0 2.5 2.2 3.8 103 chrX 3866106 intron yin - chrX 3866158 intron yin - chrX 3866209 intron yin - chrX_12_3865001 chrX_3865001 RAL-176 2044 chrX 3881283 3881303 chrX 3881422 3881442 8 139 2.5 4.0 3.2 1.9 159 chrX 3881283 intron VhaAC39-1 + chrX 3881362 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-176 2045 chrX 3986864 3986895 chrX 3994496 3994527 412 11 7632 6.5 3.5 5.0 1.8 7663 chrX 3986864 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994527 intergenic not near genes chrX_11_3990001 chrX_3990001 RAL-176 2046 chrX 4101888 4101899 chrX 4101968 4101979 8 79 2.0 9.5 5.8 1.2 91 chrX 4101888 exon CG15375 + chrX 4101934 exon CG15375 + chrX 4101979 exon CG15375 + chrX_8_4100001 chrX_4100001 RAL-176 2047 chrX 4157896 4157919 chrX 4164949 4164970 297 5 7052 3.0 2.5 2.8 1.3 7074 chrX 4157896 intron Fas2 - chrX 4161433 intron Fas2 - chrX 4164970 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-176 2048 chrX 4263602 4263635 chrX 4263689 4263721 20 86 1.5 2.0 1.8 7.1 119 chrX 4263602 intergenic not near genes chrX 4263662 intergenic not near genes chrX 4263721 intergenic not near genes chrX_20_4260001 chrX_4260001 RAL-176 2049 chrX 4296117 4296145 chrX 4296193 4296221 6 76 3.0 3.0 3.0 1.5 104 chrX 4296117 intergenic not near genes chrX 4296169 intergenic not near genes chrX 4296221 intergenic not near genes chrX_6_4295001 chrX_4295001 RAL-176 2050 chrX 4324392 4324409 chrX 4324469 4324486 7 77 1.0 5.0 3.0 1.8 94 chrX 4324392 intron norpA + chrX 4324439 intron norpA + chrX 4324486 intron norpA + chrX_7_4320001 chrX_4320001 RAL-176 2051 chrX 4337920 4337953 chrX 4338043 4338073 12 119 2.5 0.5 1.5 4.8 153 chrX 4337920 intron norpA + chrX 4337996 intron norpA + chrX 4338073 intron norpA + chrX_12_4335001 chrX_4335001 RAL-176 2052 chrX 4358090 4358123 chrX 4358192 4358225 14 102 2.5 0.0 1.2 6.4 135 chrX 4358090 intron norpA + chrX 4358158 intron norpA + chrX 4358225 intron norpA + chrX_14_4355001 chrX_4355001 RAL-176 2053 chrX 4361440 4361471 chrX 4361519 4361549 5 78 1.0 1.0 1.0 2.5 109 chrX 4361440 intron norpA + chrX 4361494 intron norpA + chrX 4361549 intron norpA + chrX_5_4360001 chrX_4360001 RAL-176 2054 chrX 4396987 4397010 chrX 4397066 4397095 11 82 3.5 4.5 4.0 2.2 108 chrX 4396987 intron CR32773 - chrX 4397041 intron CR32773 - chrX 4397095 intron CR32773 - chrX_11_4395001 chrX_4395001 RAL-176 2055 chrX 4436457 4436462 chrX 4436533 4436537 4 76 11.5 1.0 6.2 0.6 80 chrX 4436457 intron,intron CR32773 -,bi + chrX 4436497 intron,intron CR32773 -,bi + chrX 4436537 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-176 2056 chrX 4515836 4515858 chrX 4515914 4515935 9 78 0.5 4.5 2.5 2.6 99 chrX 4515836 intron CR32773 - chrX 4515886 intron CR32773 - chrX 4515935 intron CR32773 - chrX_9_4515001 chrX_4515001 RAL-176 2057 chrX 4723575 4723586 chrX 4723653 4723666 12 78 17.0 11.5 14.2 0.8 91 chrX 4723575 intron Proc-R + chrX 4723620 intron Proc-R + chrX 4723666 intron Proc-R + chrX_12_4720001 chrX_4720001 RAL-176 2058 chrX 4731816 4731830 chrX 4736904 4736922 jockey 18 5092 15.5 3.0 9.2 1.8 5106 chrX 4731816 intergenic not near genes chrX 4734369 intergenic not near genes chrX 4736922 intergenic not near genes chrX_18_4730001 chrX_4730001 RAL-176 2059 chrX 4763252 4763280 chrX 4763740 4763743 Stalker4 19 486 4.0 2.5 3.2 4.5 491 chrX 4763252 intergenic not near genes chrX 4763498 intergenic not near genes chrX 4763743 intergenic not near genes chrX_19_4760001 chrX_4760001 RAL-176 2060 chrX 4792379 4792406 chrX 4792812 4792836 jockey 6 432 4.0 7.0 5.5 0.9 457 chrX 4792379 intergenic not near genes chrX 4792608 intergenic not near genes chrX 4792836 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-176 2061 chrX 1562990 1562991 chrX 4805476 4805476 opus 4 3242486 25.5 18.5 22.0 0.2 3242486 chrX 1562990 intron Mur2B - chrX 3184233 intron dnc + chrX 4805476 3` UTR CR45516 - chrX_4_3180001 chrX_3180001 RAL-176 2062 chrX 4827993 4828001 chrX 4835345 4835347 Stalker4 4 7359 6.5 2.5 4.5 0.7 7354 chrX 4827993 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835347 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-176 2063 chrX 4990042 4990076 chrX 4997255 4997290 roo 4 7214 1.5 1.0 1.2 1.8 7248 chrX 4990042 intron CR44833 - chrX 4993666 intron CR44833 - chrX 4997290 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-176 2064 chrX 5096275 5096306 chrX 5103840 5103860 springer 12 7564 4.5 9.0 6.8 1.5 7585 chrX 5096275 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103860 intron,intron CG15465 +,rg + chrX_12_5100001 chrX_5100001 RAL-176 2065 chrX 5131410 5131430 chrX 5131477 5131502 8 78 2.5 1.5 2.0 2.7 92 chrX 5131410 intron,intron CG15465 +,rg + chrX 5131456 intron,intron CG15465 +,rg + chrX 5131502 intron,intron CG15465 +,rg + chrX_8_5130001 chrX_5130001 RAL-176 2066 chrX 5220391 5220423 chrX 5220632 5220650 12 239 0.0 9.0 4.5 2.2 259 chrX 5220391 intron,intron CG15465 +,rg + chrX 5220520 intron,intron CG15465 +,rg + chrX 5220650 intron,intron CG15465 +,rg + chrX_12_5220001 chrX_5220001 RAL-176 2067 chrX 5345397 5345428 chrX 5345507 5345539 10 110 3.0 1.0 2.0 3.3 142 chrX 5345397 intron SK + chrX 5345468 intron SK + chrX 5345539 intron SK + chrX_10_5345001 chrX_5345001 RAL-176 2068 chrX 5350303 5350315 chrX 5350412 5350417 6 108 9.5 13.5 11.5 0.5 114 chrX 5350303 intron SK + chrX 5350360 intron SK + chrX 5350417 intron SK + chrX_6_5350001 chrX_5350001 RAL-176 2069 chrX 5362843 5362852 chrX 5362955 5362964 4 112 0.0 2.0 1.0 2.0 121 chrX 5362843 intron SK + chrX 5362904 intron SK + chrX 5362964 intron SK + chrX_4_5360001 chrX_5360001 RAL-176 2070 chrX 5425044 5425076 chrX 5425117 5425130 13 73 5.0 7.0 6.0 1.9 86 chrX 5425044 intron CG4165 + chrX 5425087 intron CG4165 + chrX 5425130 intron CG4165 + chrX_13_5425001 chrX_5425001 RAL-176 2071 chrX 5512057 5512085 chrX 5512136 5512145 6 76 1.5 0.0 0.8 3.3 88 chrX 5512057 intergenic not near genes chrX 5512101 intergenic not near genes chrX 5512145 intergenic not near genes chrX_6_5510001 chrX_5510001 RAL-176 2072 chrX 5524846 5524872 chrX 5528709 5528735 412 10 3863 4.5 2.5 3.5 2.2 3889 chrX 5524846 intergenic snoRNA:Psi28S-3342 - chrX 5526790 intergenic not near genes chrX 5528735 intergenic Vsx2 - chrX_10_5525001 chrX_5525001 RAL-176 2073 chrX 5883813 5883833 chrX 5884054 5884074 pogo 5 241 3.0 2.5 2.8 1.3 261 chrX 5883813 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884074 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-176 2074 chrX 5884162 5884175 chrX 5884401 5884416 pogo 6 240 7.0 1.0 4.0 1.2 254 chrX 5884162 intron CR45668 - chrX 5884289 intron CR45668 - chrX 5884416 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-176 2075 chrX 5890363 5890382 chrX 5890439 5890458 7 76 3.0 8.0 5.5 1.1 95 chrX 5890363 intron CR45668 - chrX 5890410 intron CR45668 - chrX 5890458 intron CR45668 - chrX_7_5890001 chrX_5890001 RAL-176 2076 chrX 6168096 6168126 chrX 6168181 6168211 10 84 2.5 2.0 2.2 3.1 115 chrX 6168096 intron Ca-alpha1T - chrX 6168154 intron Ca-alpha1T - chrX 6168211 intron Ca-alpha1T - chrX_10_6165001 chrX_6165001 RAL-176 2077 chrX 6171586 6171617 chrX 6179015 6179050 Quasimodo 7 7432 3.0 4.5 3.8 1.5 7464 chrX 6171586 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-176 2078 chrX 6198387 6198394 chrX 6202240 6202245 4 3852 0.0 29.5 14.8 0.3 3858 chrX 6198387 exon CG32751 - chrX 6200316 3` UTR vanin-like - chrX 6202245 exon vanin-like - chrX_4_6200001 chrX_6200001 RAL-176 2079 chrX 6312190 6312220 chrX 6312273 6312303 10 81 4.5 2.0 3.2 2.4 113 chrX 6312190 intron CG15894 + chrX 6312246 intron CG15894 + chrX 6312303 intron CG15894 + chrX_10_6310001 chrX_6310001 RAL-176 2080 chrX 6315159 6315190 chrX 6315289 6315320 10 130 4.0 5.5 4.8 1.7 161 chrX 6315159 intron CG15894 + chrX 6315240 intron CG15894 + chrX 6315320 intron CG15894 + chrX_10_6315001 chrX_6315001 RAL-176 2081 chrX 6335212 6335244 chrX 6337722 6337754 Tirant 22 2509 0.5 8.0 4.2 4.2 2542 chrX 6335212 intergenic not near genes chrX 6336483 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_22_6335001 chrX_6335001 RAL-176 2082 chrX 6392870 6392898 chrX 6397635 6397664 Doc 9 4765 7.0 3.0 5.0 1.5 4794 chrX 6392870 intergenic not near genes chrX 6395267 intergenic not near genes chrX 6397664 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-176 2083 chrX 6515948 6515982 chrX 6516031 6516065 11 83 3.5 1.0 2.2 3.4 117 chrX 6515948 intron CG42340 - chrX 6516006 intron CG42340 - chrX 6516065 intron CG42340 - chrX_11_6515001 chrX_6515001 RAL-176 2084 chrX 6562826 6562848 chrX 6571305 6571313 Tirant 5 8474 3.5 6.0 4.8 0.9 8487 chrX 6562826 intron CG34417 + chrX 6567070 intron CG34417 + chrX 6571313 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-176 2085 chrX 6573865 6573892 chrX 6573974 6574001 7 109 0.5 3.0 1.8 2.5 136 chrX 6573865 intron CG34417 + chrX 6573933 intron CG34417 + chrX 6574001 intron CG34417 + chrX_7_6570001 chrX_6570001 RAL-176 2086 chrX 6681163 6681166 chrX 6683116 6683117 4 1957 21.0 27.0 24.0 0.2 1954 chrX 6681163 exon l(1)G0255 + chrX 6682140 intron CG4095 + chrX 6683117 exon CG4095 + chrX_4_6680001 chrX_6680001 RAL-176 2087 chrX 6859572 6859576 chrX 6859985 6859989 4 413 4.5 0.0 2.2 1.2 417 chrX 6859572 intron CG14434 - chrX 6859780 intron CG14434 - chrX 6859989 intron CG14434 - chrX_4_6855001 chrX_6855001 RAL-176 2088 chrX 6897567 6897586 chrX 6897645 6897664 5 78 1.0 4.5 2.8 1.3 97 chrX 6897567 intergenic not near genes chrX 6897616 intergenic not near genes chrX 6897664 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-176 2089 chrX 6897590 6897711 chrX 6897667 6897819 7 105 4.5 5.0 4.8 1.2 229 chrX 6897590 intergenic not near genes chrX 6897704 intergenic not near genes chrX 6897819 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-176 2090 chrX 7023599 7023633 chrX 7030989 7031023 Tabor 12 7390 5.5 3.0 4.2 2.3 7424 chrX 7023599 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031023 intron CG12541 - chrX_12_7025001 chrX_7025001 RAL-176 2091 chrX 7101320 7101338 chrX 7101475 7101493 12 155 3.0 1.5 2.2 3.8 173 chrX 7101320 intron CG4615 - chrX 7101406 intron CG4615 - chrX 7101493 intron CG4615 - chrX_12_7100001 chrX_7100001 RAL-176 2092 chrX 7125243 7125275 chrX 7134403 7134434 roo 14 9158 1.0 4.0 2.5 4.0 9191 chrX 7125243 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134434 intergenic not near genes chrX_14_7125001 chrX_7125001 RAL-176 2093 chrX 7183808 7183829 chrX 7183886 7183907 5 77 0.5 2.0 1.2 2.3 99 chrX 7183808 intron,intron CG9650 +,CR44357 - chrX 7183858 intron,intron CG9650 +,CR44357 - chrX 7183907 intron,intron CG9650 +,CR44357 - chrX_5_7180001 chrX_7180001 RAL-176 2094 chrX 7268370 7268394 chrX 7268445 7268472 15 78 7.5 1.5 4.5 2.7 102 chrX 7268370 intron CR44357 - chrX 7268421 intron CR44357 - chrX 7268472 intron CR44357 - chrX_15_7265001 chrX_7265001 RAL-176 2095 chrX 7702899 7702923 chrX 7703336 7703361 jockey 14 438 4.5 2.0 3.2 3.3 462 chrX 7702899 intron CHES-1-like - chrX 7703130 intron CHES-1-like - chrX 7703361 intron CHES-1-like - chrX_14_7700001 chrX_7700001 RAL-176 2096 chrX 7718866 7718896 chrX 7718985 7719015 18 119 4.5 5.5 5.0 3.0 149 chrX 7718866 intergenic not near genes chrX 7718940 intergenic not near genes chrX 7719015 intergenic not near genes chrX_18_7715001 chrX_7715001 RAL-176 2097 chrX 7784234 7784242 chrX 7784536 7784544 jockey 7 302 9.0 8.0 8.5 0.7 310 chrX 7784234 intergenic not near genes chrX 7784389 intergenic not near genes chrX 7784544 intergenic not near genes chrX_7_7780001 chrX_7780001 RAL-176 2098 chrX 7809975 7810009 chrX 7810080 7810115 27 104 8.0 1.5 4.8 4.7 140 chrX 7809975 intergenic not near genes chrX 7810045 intergenic not near genes chrX 7810115 intergenic not near genes chrX_27_7810001 chrX_7810001 RAL-176 2099 chrX 7832435 7832463 chrX 7832524 7832552 4 89 0.5 3.5 2.0 1.3 117 chrX 7832435 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832552 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-176 2100 chrX 7845730 7845757 chrX 7847221 7847248 hopper2 9 1491 3.0 5.0 4.0 1.8 1518 chrX 7845730 intergenic not near genes chrX 7846489 intergenic not near genes chrX 7847248 intergenic not near genes chrX_9_7845001 chrX_7845001 RAL-176 2101 chrX 8263773 8263793 chrX 8263857 8263877 5 84 1.5 1.5 1.5 2.0 104 chrX 8263773 intron CG1632 + chrX 8263825 intron CG1632 + chrX 8263877 intron CG1632 + chrX_5_8260001 chrX_8260001 RAL-176 2102 chrX 8506028 8506061 chrX 8506106 8506138 5 78 1.5 0.0 0.8 2.8 110 chrX 8506028 intron CG33181 + chrX 8506083 intron CG33181 + chrX 8506138 intron CG33181 + chrX_5_8505001 chrX_8505001 RAL-176 2103 chrX 8509118 8509150 chrX 8509195 8509227 4 77 0.0 1.5 0.8 2.2 109 chrX 8509118 intron CG33181 + chrX 8509172 intron CG33181 + chrX 8509227 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-176 2104 chrX 8536760 8536773 chrX 8536836 8536849 6 76 13.5 5.0 9.2 0.6 89 chrX 8536760 intron Nrg + chrX 8536804 intron Nrg + chrX 8536849 intron Nrg + chrX_6_8535001 chrX_8535001 RAL-176 2105 chrX 8687836 8687871 chrX 8689230 8689268 15 1396 87.5 56.0 71.8 0.2 1432 chrX 8687836 exon CG11284 + chrX 8688552 3` UTR CG11284 + chrX 8689268 exon Ppt1 - chrX_15_8685001 chrX_8685001 RAL-176 2106 chrX 8727407 8727427 chrX 8727484 8727504 5 77 1.0 0.0 0.5 3.3 97 chrX 8727407 intergenic not near genes chrX 8727456 intergenic not near genes chrX 8727504 intergenic not near genes chrX_5_8725001 chrX_8725001 RAL-176 2107 chrX 8744290 8744307 chrX 8744442 8744459 4 152 1.0 3.0 2.0 1.3 169 chrX 8744290 intergenic not near genes chrX 8744374 intergenic not near genes chrX 8744459 intergenic not near genes chrX_4_8740001 chrX_8740001 RAL-176 2108 chrX 8888639 8888661 chrX 8888716 8888738 11 77 5.5 3.0 4.2 2.1 99 chrX 8888639 intron Moe - chrX 8888688 intron Moe - chrX 8888738 intron Moe - chrX_11_8885001 chrX_8885001 RAL-176 2109 chrX 8922334 8922361 chrX 8922768 8922795 jockey 11 433 8.0 7.0 7.5 1.3 461 chrX 8922334 intron rdgA + chrX 8922564 intron rdgA + chrX 8922795 intron rdgA + chrX_11_8920001 chrX_8920001 RAL-176 2110 chrX 9273024 9273045 chrX 9273105 9273126 5 80 2.0 1.0 1.5 2.0 102 chrX 9273024 intergenic Cfp1 -,CG16892 + chrX 9273075 intergenic Cfp1 -,CG16892 + chrX 9273126 intergenic Cfp1 -,CG16892 + chrX_5_9270001 chrX_9270001 RAL-176 2111 chrX 9337940 9337971 chrX 9338032 9338063 25 91 9.0 12.0 10.5 2.2 123 chrX 9337940 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338063 exon CG34449 - chrX_25_9335001 chrX_9335001 RAL-176 2112 chrX 7978952 7978954 chrX 9474157 9474160 4 1495206 40.5 23.0 31.8 0.1 1495208 chrX 7978952 intron sn + chrX 8726556 intergenic not near genes chrX 9474160 intron mgl - chrX_4_8725001 chrX_8725001 RAL-176 2113 chrX 9508138 9508148 chrX 9509656 9509662 jockey 7 1517 8.5 6.5 7.5 0.8 1524 chrX 9508138 intron CG32700 - chrX 9508900 intron CG32700 - chrX 9509662 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-176 2114 chrX 9508151 9508167 chrX 9509653 9509685 jockey 12 1516 4.0 6.0 5.0 2.0 1534 chrX 9508151 intron CG32700 - chrX 9508918 intron CG32700 - chrX 9509685 intron CG32700 - chrX_12_9505001 chrX_9505001 RAL-176 2115 chrX 9575794 9575806 chrX 9576117 9576129 mdg3 4 323 5.0 6.0 5.5 0.6 335 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575962 intron,intron CG32699 -,CG42395 - chrX 9576129 intron,exon CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-176 2116 chrX 9575807 9575822 chrX 9576113 9576146 mdg3 9 322 3.0 5.0 4.0 1.8 339 chrX 9575807 intron,exon CG32699 -,CG42395 - chrX 9575976 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-176 2117 chrX 9599175 9599202 chrX 9599250 9599280 14 76 4.5 4.5 4.5 2.5 105 chrX 9599175 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599280 intergenic not near genes chrX_14_9595001 chrX_9595001 RAL-176 2118 chrX 9604059 9604092 chrX 9604202 9604221 20 142 4.5 4.5 4.5 3.6 162 chrX 9604059 3` UTR Gga + chrX 9604140 3` UTR Gga + chrX 9604221 3` UTR,3` UTR Gga +,Lst8 - chrX_20_9600001 chrX_9600001 RAL-176 2119 chrX 9839370 9839380 chrX 9839452 9839462 5 81 0.5 10.5 5.5 0.8 92 chrX 9839370 intron CG32698 + chrX 9839416 intron CG32698 + chrX 9839462 intron CG32698 + chrX_5_9835001 chrX_9835001 RAL-176 2120 chrX 8382092 8382094 chrX 9845361 9845361 11 1463267 24.0 38.0 31.0 0.3 1463269 chrX 8382092 intergenic not near genes chrX 9113726 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_11_9110001 chrX_9110001 RAL-176 2121 chrX 9845361 9845361 chrX 14544906 14544906 4 4699545 38.5 26.0 32.2 0.1 4699545 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544906 intergenic not near genes chrX_4_12195001 chrX_12195001 RAL-176 2122 chrX 10216845 10216852 chrX 10216926 10216933 5 81 27.0 25.0 26.0 0.2 88 chrX 10216845 3` UTR l(1)G0230 + chrX 10216889 3` UTR l(1)G0230 + chrX 10216933 3` UTR l(1)G0230 + chrX_5_10215001 chrX_10215001 RAL-176 2123 chrX 10217267 10217277 chrX 10217368 10217377 9 100 5.5 20.5 13.0 0.6 110 chrX 10217267 3` UTR l(1)G0230 + chrX 10217322 3` UTR l(1)G0230 + chrX 10217377 3` UTR l(1)G0230 + chrX_9_10215001 chrX_10215001 RAL-176 2124 chrX 10330667 10330673 chrX 10330882 10330891 5 217 5.5 9.0 7.2 0.6 224 chrX 10330667 exon CG15306 - chrX 10330779 exon CG15306 - chrX 10330891 exon CG15306 - chrX_5_10330001 chrX_10330001 RAL-176 2125 chrX 10524016 10524036 chrX 10524155 10524175 9 137 1.0 1.0 1.0 4.5 159 chrX 10524016 intron spri - chrX 10524096 intron spri - chrX 10524175 intron spri - chrX_9_10520001 chrX_10520001 RAL-176 2126 chrX 10547010 10547038 chrX 10547153 10547182 12 144 4.0 9.5 6.8 1.5 172 chrX 10547010 intron spri - chrX 10547096 intron spri - chrX 10547182 intron spri - chrX_12_10545001 chrX_10545001 RAL-176 2127 chrX 10550334 10550364 chrX 10550412 10550442 9 78 3.5 0.5 2.0 3.0 108 chrX 10550334 intron spri - chrX 10550388 intron spri - chrX 10550442 intron spri - chrX_9_10550001 chrX_10550001 RAL-176 2128 chrX 10550850 10550889 chrX 10552317 10552355 hobo 19 1466 5.0 6.0 5.5 2.9 1505 chrX 10550850 intron spri - chrX 10551602 intron spri - chrX 10552355 intron spri - chrX_19_10550001 chrX_10550001 RAL-176 2129 chrX 10666447 10666474 chrX 10666614 10666641 5 167 0.5 0.5 0.5 3.3 194 chrX 10666447 intron X11Lbeta + chrX 10666544 intron X11Lbeta + chrX 10666641 intron X11Lbeta + chrX_5_10665001 chrX_10665001 RAL-176 2130 chrX 10678714 10678733 chrX 10679211 10679229 7 495 5.0 3.0 4.0 1.4 515 chrX 10678714 intron X11Lbeta + chrX 10678972 intron X11Lbeta + chrX 10679229 intron X11Lbeta + chrX_7_10675001 chrX_10675001 RAL-176 2131 chrX 10686055 10686080 chrX 10691191 10691217 roo 4 5136 1.5 4.0 2.8 1.1 5162 chrX 10686055 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691217 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-176 2132 chrX 10719129 10719148 chrX 10719213 10719232 12 84 0.0 6.0 3.0 3.0 103 chrX 10719129 intron CG32676 - chrX 10719180 intron CG32676 - chrX 10719232 intron CG32676 - chrX_12_10715001 chrX_10715001 RAL-176 2133 chrX 10772677 10772698 chrX 10772760 10772781 Tirant 14 80 3.5 4.0 3.8 2.9 104 chrX 10772677 intron CG15211 + chrX 10772729 intron CG15211 + chrX 10772781 intron CG15211 + chrX_14_10770001 chrX_10770001 RAL-176 2134 chrX 11034774 11034804 chrX 11034879 11034910 9 105 2.5 2.5 2.5 2.6 136 chrX 11034774 intron CG42339 - chrX 11034842 intron CG42339 - chrX 11034910 intron CG42339 - chrX_9_11030001 chrX_11030001 RAL-176 2135 chrX 11062446 11062475 chrX 11062541 11062570 17 95 6.5 6.0 6.2 2.4 124 chrX 11062446 exon CG1537 - chrX 11062508 intron CG1537 - chrX 11062570 intron CG1537 - chrX_17_11060001 chrX_11060001 RAL-176 2136 chrX 11069160 11069192 chrX 11069303 11069332 6 142 1.5 2.0 1.8 2.1 172 chrX 11069160 intergenic not near genes chrX 11069246 intergenic not near genes chrX 11069332 intergenic not near genes chrX_6_11065001 chrX_11065001 RAL-176 2137 chrX 11096001 11096020 chrX 11103103 11103122 HMS-Beagle 4 7102 4.0 6.0 5.0 0.7 7121 chrX 11096001 intergenic not near genes chrX 11099562 intergenic not near genes chrX 11103122 intron CG42249 + chrX_4_11095001 chrX_11095001 RAL-176 2138 chrX 11214988 11215012 chrX 11215350 11215375 7 363 3.5 3.5 3.5 1.6 387 chrX 11214988 intergenic not near genes chrX 11215182 intergenic not near genes chrX 11215375 intergenic not near genes chrX_7_11215001 chrX_11215001 RAL-176 2139 chrX 11312061 11312091 chrX 11319414 11319444 Stalker2 15 7350 3.0 4.5 3.8 3.1 7383 chrX 11312061 intergenic not near genes chrX 11315752 intergenic not near genes chrX 11319444 intergenic not near genes chrX_15_11315001 chrX_11315001 RAL-176 2140 chrX 11379766 11379785 chrX 11379911 11379930 5 144 3.5 2.0 2.8 1.3 164 chrX 11379766 intron dlg1 + chrX 11379848 intron dlg1 + chrX 11379930 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-176 2141 chrX 11571456 11571485 chrX 11571693 11571722 pogo 16 237 1.5 8.5 5.0 2.7 266 chrX 11571456 3` UTR Kmn1 - chrX 11571589 3` UTR Kmn1 - chrX 11571722 3` UTR Kmn1 - chrX_16_11570001 chrX_11570001 RAL-176 2142 chrX 11633415 11633449 chrX 11640469 11640503 297 10 7054 3.5 2.5 3.0 2.5 7088 chrX 11633415 intron Ptp10D + chrX 11636959 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_10_11635001 chrX_11635001 RAL-176 2143 chrX 11719879 11719903 chrX 11719959 11719983 8 80 1.5 5.0 3.2 1.9 104 chrX 11719879 3` UTR prtp + chrX 11719931 intergenic prtp +,Tango10 + chrX 11719983 intergenic prtp +,Tango10 + chrX_8_11715001 chrX_11715001 RAL-176 2144 chrX 11804678 11804687 chrX 11804782 11804791 4 104 0.5 6.0 3.2 1.0 113 chrX 11804678 intron Hsc70-3 - chrX 11804734 intron Hsc70-3 - chrX 11804791 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-176 2145 chrX 11922372 11922379 chrX 11922505 11922512 4 132 3.0 7.0 5.0 0.7 140 chrX 11922372 exon Sclp - chrX 11922442 intron Sclp - chrX 11922512 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-176 2146 chrX 12038086 12038117 chrX 12038280 12038311 15 193 5.5 7.5 6.5 2.0 225 chrX 12038086 intergenic not near genes chrX 12038198 intergenic not near genes chrX 12038311 intergenic not near genes chrX_15_12035001 chrX_12035001 RAL-176 2147 chrX 12168136 12168164 chrX 12173578 12173606 I-element 9 5442 6.5 7.0 6.8 1.2 5470 chrX 12168136 intron Ten-a + chrX 12170871 intron Ten-a + chrX 12173606 intron Ten-a + chrX_9_12170001 chrX_12170001 RAL-176 2148 chrX 12185358 12185388 chrX 12185437 12185467 15 77 0.5 5.5 3.0 3.8 109 chrX 12185358 intron Ten-a + chrX 12185412 intron Ten-a + chrX 12185467 intron Ten-a + chrX_15_12185001 chrX_12185001 RAL-176 2149 chrX 12272848 12272868 chrX 12272926 12272947 7 79 4.0 5.0 4.5 1.3 99 chrX 12272848 intron Ten-a + chrX 12272898 intron Ten-a + chrX 12272947 intron Ten-a + chrX_7_12270001 chrX_12270001 RAL-176 2150 chrX 12277304 12277341 chrX 12277564 12277600 24 258 1.5 7.0 4.2 4.6 296 chrX 12277304 intron Ten-a + chrX 12277452 intron Ten-a + chrX 12277600 intron Ten-a + chrX_24_12275001 chrX_12275001 RAL-176 2151 chrX 12301955 12301989 chrX 12303261 12303295 X-element 15 1303 4.0 1.5 2.8 3.9 1340 chrX 12301955 intron Ten-a + chrX 12302625 intron Ten-a + chrX 12303295 intron Ten-a + chrX_15_12300001 chrX_12300001 RAL-176 2152 chrX 12350773 12350806 chrX 12350852 12350887 14 80 5.5 1.0 3.2 3.3 114 chrX 12350773 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350887 intergenic not near genes chrX_14_12350001 chrX_12350001 RAL-176 2153 chrX 12465475 12465498 chrX 12465550 12465574 6 76 8.0 0.0 4.0 1.2 99 chrX 12465475 exon CG42258 + chrX 12465524 intron CG42258 + chrX 12465574 intron CG42258 + chrX_6_12465001 chrX_12465001 RAL-176 2154 chrX 12511327 12511347 chrX 12511411 12511430 5 84 0.0 3.5 1.8 1.8 103 chrX 12511327 intron CG2556 + chrX 12511378 intron CG2556 + chrX 12511430 intron CG2556 + chrX_5_12510001 chrX_12510001 RAL-176 2155 chrX 12533819 12533822 chrX 12533895 12533898 4 76 0.0 7.5 3.8 0.8 79 chrX 12533819 intron CG43921 - chrX 12533858 intron CG43921 - chrX 12533898 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-176 2156 chrX 12612744 12612756 chrX 12612828 12612840 5 84 4.0 1.0 2.5 1.4 96 chrX 12612744 exon,3` UTR CG2543 +,CR45621 - chrX 12612792 intron,3` UTR CG2543 +,CR45621 - chrX 12612840 intron,3` UTR CG2543 +,CR45621 - chrX_5_12610001 chrX_12610001 RAL-176 2157 chrX 855357 855377 chrX 12649915 12649915 7 11794544 2.5 31.5 17.0 0.4 11794558 chrX 855357 intron CG43867 - chrX 6752636 intron CG14439 + chrX 12649915 intron Tomosyn + chrX_7_6750001 chrX_6750001 RAL-176 2158 chrX 4617441 4617443 chrX 12649915 12649915 6 8032473 65.5 31.5 48.5 0.1 8032474 chrX 4617441 intergenic peb + chrX 8633678 exon oc - chrX 12649915 intron Tomosyn + chrX_6_8630001 chrX_8630001 RAL-176 2159 chrX 12971687 12971722 chrX 12971764 12971775 9 72 6.5 4.5 5.5 1.4 88 chrX 12971687 intron,exon CR43636 -,CG15721 + chrX 12971731 intron,exon CR43636 -,CG15721 + chrX 12971775 intron,exon CR43636 -,CG15721 + chrX_9_12970001 chrX_12970001 RAL-176 2160 chrX 13061356 13061372 chrX 13061467 13061481 8 110 2.0 1.5 1.8 2.9 125 chrX 13061356 intron rad + chrX 13061418 intron rad + chrX 13061481 intron rad + chrX_8_13060001 chrX_13060001 RAL-176 2161 chrX 13269202 13269228 chrX 13269276 13269304 11 76 0.0 0.0 0.0 11.0 102 chrX 13269202 intron HDAC4 - chrX 13269253 intron HDAC4 - chrX 13269304 intron HDAC4 - chrX_11_13265001 chrX_13265001 RAL-176 2162 chrX 13369675 13369706 chrX 13369836 13369867 29 162 7.5 9.5 8.5 3.1 192 chrX 13369675 intron dmrt11E + chrX 13369771 intron dmrt11E + chrX 13369867 intron dmrt11E + chrX_29_13365001 chrX_13365001 RAL-176 2163 chrX 13429471 13429492 chrX 13430619 13430641 jockey 5 1149 0.0 3.0 1.5 2.0 1170 chrX 13429471 intergenic not near genes chrX 13430056 intergenic not near genes chrX 13430641 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-176 2164 chrX 13577771 13577781 chrX 13578004 13578016 5 235 2.5 6.0 4.2 1.0 245 chrX 13577771 intron Tango13 + chrX 13577894 intron Tango13 + chrX 13578016 intron Tango13 + chrX_5_13575001 chrX_13575001 RAL-176 2165 chrX 13908798 13908810 chrX 13908876 13908888 8 77 8.0 23.0 15.5 0.5 90 chrX 13908798 intron mamo - chrX 13908843 intron mamo - chrX 13908888 intron mamo - chrX_8_13905001 chrX_13905001 RAL-176 2166 chrX 13935515 13935526 chrX 13935598 13935607 8 82 12.0 23.5 17.8 0.4 92 chrX 13935515 intron mamo - chrX 13935561 intron mamo - chrX 13935607 intron mamo - chrX_8_13935001 chrX_13935001 RAL-176 2167 chrX 13937979 13938008 chrX 13941250 13941279 I-element 9 3269 6.0 4.0 5.0 1.5 3300 chrX 13937979 intron mamo - chrX 13939629 intron mamo - chrX 13941279 intron mamo - chrX_9_13935001 chrX_13935001 RAL-176 2168 chrX 13943277 13943301 chrX 13943368 13943392 9 91 0.0 7.0 3.5 2.0 115 chrX 13943277 intron mamo - chrX 13943334 intron mamo - chrX 13943392 intron mamo - chrX_9_13940001 chrX_13940001 RAL-176 2169 chrX 14105021 14105037 chrX 14114172 14114188 roo 6 9151 13.5 7.5 10.5 0.5 9167 chrX 14105021 intergenic not near genes chrX 14109604 intergenic not near genes chrX 14114188 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-176 2170 chrX 14105039 14105056 chrX 14114171 14114191 roo 12 9144 9.5 7.5 8.5 1.3 9152 chrX 14105039 intergenic not near genes chrX 14109615 intergenic not near genes chrX 14114191 5` UTR CR44657 + chrX_12_14105001 chrX_14105001 RAL-176 2171 chrX 14122619 14122649 chrX 14122694 14122725 4 76 0.0 4.5 2.2 1.2 106 chrX 14122619 intergenic not near genes chrX 14122672 intergenic not near genes chrX 14122725 intergenic not near genes chrX_4_14120001 chrX_14120001 RAL-176 2172 chrX 14157600 14157620 chrX 14163257 14163277 297 6 5657 1.0 3.0 2.0 2.0 5677 chrX 14157600 intergenic not near genes chrX 14160438 intergenic not near genes chrX 14163277 intergenic not near genes chrX_6_14160001 chrX_14160001 RAL-176 2173 chrX 14296458 14296490 chrX 14296534 14296565 16 74 3.0 4.0 3.5 3.6 107 chrX 14296458 intergenic not near genes chrX 14296512 intergenic not near genes chrX 14296565 intergenic not near genes chrX_16_14295001 chrX_14295001 RAL-176 2174 chrX 14300566 14300575 chrX 14300643 14300652 5 77 0.5 4.5 2.5 1.4 86 chrX 14300566 intergenic not near genes chrX 14300609 intergenic not near genes chrX 14300652 intergenic not near genes chrX_5_14300001 chrX_14300001 RAL-176 2175 chrX 14411259 14411289 chrX 14411337 14411367 5 77 0.5 1.0 0.8 2.8 108 chrX 14411259 intron dpr8 + chrX 14411313 intron dpr8 + chrX 14411367 intron dpr8 + chrX_5_14410001 chrX_14410001 RAL-176 2176 chrX 14413825 14413857 chrX 14413919 14413951 9 94 1.5 4.5 3.0 2.2 126 chrX 14413825 intron dpr8 + chrX 14413888 intron dpr8 + chrX 14413951 intron dpr8 + chrX_9_14410001 chrX_14410001 RAL-176 2177 chrX 14589694 14589706 chrX 14589935 14589947 pogo 5 241 2.5 1.0 1.8 1.8 253 chrX 14589694 intron CG9413 - chrX 14589820 intron CG9413 - chrX 14589947 intron CG9413 - chrX_5_14585001 chrX_14585001 RAL-176 2178 chrX 14628755 14628780 chrX 14628836 14628859 6 80 1.5 1.5 1.5 2.4 104 chrX 14628755 intron NetA - chrX 14628807 intron NetA - chrX 14628859 intron NetA - chrX_6_14625001 chrX_14625001 RAL-176 2179 chrX 14636475 14636493 chrX 14641904 14641933 I-element 8 5438 6.0 5.0 5.5 1.2 5458 chrX 14636475 intron NetA - chrX 14639204 intron NetA - chrX 14641933 intron NetA - chrX_8_14635001 chrX_14635001 RAL-176 2180 chrX 14767952 14767977 chrX 14768024 14768057 6 78 3.5 0.0 1.8 2.1 105 chrX 14767952 intergenic not near genes chrX 14768004 intergenic not near genes chrX 14768057 intergenic not near genes chrX_6_14765001 chrX_14765001 RAL-176 2181 chrX 14818769 14818796 chrX 14823973 14824000 copia 9 5203 6.5 4.5 5.5 1.4 5231 chrX 14818769 intron rut - chrX 14821384 intron rut - chrX 14824000 intron rut - chrX_9_14820001 chrX_14820001 RAL-176 2182 chrX 14883598 14883620 chrX 14883671 14883696 4 75 3.5 0.0 1.8 1.4 98 chrX 14883598 intron Flo2 + chrX 14883647 intron Flo2 + chrX 14883696 intron Flo2 + chrX_4_14880001 chrX_14880001 RAL-176 2183 chrX 14888951 14888973 chrX 14889037 14889056 4 85 3.5 1.5 2.5 1.1 105 chrX 14888951 intron,intron Flo2 +,CG9514 - chrX 14889004 intron,intron Flo2 +,CG9514 - chrX 14889056 intron,intron Flo2 +,CG9514 - chrX_4_14885001 chrX_14885001 RAL-176 2184 chrX 14900852 14900879 chrX 14901043 14901070 8 192 1.0 2.5 1.8 2.9 218 chrX 14900852 intron Flo2 + chrX 14900961 intron Flo2 + chrX 14901070 intron Flo2 + chrX_8_14900001 chrX_14900001 RAL-176 2185 chrX 14936865 14936892 chrX 14946122 14946149 roo 8 9257 2.5 6.5 4.5 1.5 9284 chrX 14936865 intron pdgy - chrX 14941507 intron pdgy - chrX 14946149 intron pdgy - chrX_8_14940001 chrX_14940001 RAL-176 2186 chrX 14981730 14981739 chrX 14981809 14981818 4 79 2.0 0.5 1.2 1.8 88 chrX 14981730 intron eag + chrX 14981774 intron eag + chrX 14981818 intron eag + chrX_4_14980001 chrX_14980001 RAL-176 2187 chrX 15059191 15059207 chrX 15059297 15059313 4 106 0.0 6.5 3.2 1.0 122 chrX 15059191 intron hiw - chrX 15059252 intron hiw - chrX 15059313 intron hiw - chrX_4_15055001 chrX_15055001 RAL-176 2188 chrX 15273711 15273733 chrX 15274875 15274893 1360 6 1162 14.0 12.0 13.0 0.4 1182 chrX 15273711 intergenic not near genes chrX 15274302 intergenic not near genes chrX 15274893 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-176 2189 chrX 15277636 15277656 chrX 15277721 15277741 7 85 2.0 3.5 2.8 1.8 105 chrX 15277636 intergenic not near genes chrX 15277688 intergenic not near genes chrX 15277741 intergenic not near genes chrX_7_15275001 chrX_15275001 RAL-176 2190 chrX 15277659 15277668 chrX 15277719 15277753 4 79 0.5 3.0 1.8 1.4 94 chrX 15277659 intergenic not near genes chrX 15277706 intergenic not near genes chrX 15277753 intergenic not near genes chrX_4_15275001 chrX_15275001 RAL-176 2191 chrX 15358308 15358337 chrX 15358396 15358425 10 86 0.0 1.5 0.8 5.6 117 chrX 15358308 intron acj6 - chrX 15358366 intron acj6 - chrX 15358425 intron acj6 - chrX_10_15355001 chrX_15355001 RAL-176 2192 chrX 15413048 15413085 chrX 15417350 15417387 Juan 22 4300 10.5 6.5 8.5 2.3 4339 chrX 15413048 intron Cngl - chrX 15415218 intron Cngl - chrX 15417387 intron Cngl - chrX_22_15415001 chrX_15415001 RAL-176 2193 chrX 15435694 15435705 chrX 15436127 15436138 rover 5 433 0.0 13.5 6.8 0.6 444 chrX 15435694 intron Cngl - chrX 15435916 intron Cngl - chrX 15436138 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-176 2194 chrX 15666213 15666227 chrX 15666288 15666304 10 76 10.0 11.5 10.8 0.8 91 chrX 15666213 intergenic not near genes chrX 15666258 intergenic not near genes chrX 15666304 intergenic not near genes chrX_10_15665001 chrX_15665001 RAL-176 2195 chrX 15678050 15678067 chrX 15678114 15678142 15 75 11.0 13.0 12.0 1.2 92 chrX 15678050 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678142 intergenic CG12708 + chrX_15_15675001 chrX_15675001 RAL-176 2196 chrX 15759522 15759536 chrX 15759598 15759612 4 76 0.5 3.0 1.8 1.4 90 chrX 15759522 intron Graf - chrX 15759567 intron Graf - chrX 15759612 intron Graf - chrX_4_15755001 chrX_15755001 RAL-176 2197 chrX 16295526 16295551 chrX 16295609 16295635 8 83 1.5 0.0 0.8 4.4 109 chrX 16295526 intron CG9911 - chrX 16295580 intron CG9911 - chrX 16295635 intron CG9911 - chrX_8_16295001 chrX_16295001 RAL-176 2198 chrX 16329436 16329449 chrX 16329519 16329532 4 82 0.0 11.5 5.8 0.6 96 chrX 16329436 intron CG9919 - chrX 16329484 intron CG9919 - chrX 16329532 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-176 2199 chrX 16476591 16476611 chrX 16476659 16476687 11 72 9.0 5.0 7.0 1.4 96 chrX 16476591 intron para - chrX 16476639 intron para - chrX 16476687 intron para - chrX_11_16475001 chrX_16475001 RAL-176 2200 chrX 16492647 16492679 chrX 16498224 16498256 mdg3 10 5577 8.5 3.0 5.8 1.5 5609 chrX 16492647 intron para - chrX 16495452 intron para - chrX 16498256 intron para - chrX_10_16495001 chrX_16495001 RAL-176 2201 chrX 16529425 16529440 chrX 16529531 16529551 6 110 0.0 2.5 1.2 2.7 126 chrX 16529425 intron para - chrX 16529488 intron para - chrX 16529551 intron para - chrX_6_16525001 chrX_16525001 RAL-176 2202 chrX 16650931 16650948 chrX 16651008 16651025 5 77 2.5 0.0 1.2 2.3 94 chrX 16650931 intergenic CG32573 +,CG42512 + chrX 16650978 intergenic CG32573 +,CG42512 + chrX 16651025 intergenic CG32573 +,CG42512 + chrX_5_16650001 chrX_16650001 RAL-176 2203 chrX 16690455 16690478 chrX 16690533 16690556 11 76 3.0 7.5 5.2 1.8 101 chrX 16690455 intron Sep4 - chrX 16690506 intron Sep4 - chrX 16690556 intron Sep4 - chrX_11_16690001 chrX_16690001 RAL-176 2204 chrX 16836736 16836767 chrX 16836858 16836888 7 118 4.0 0.5 2.2 2.2 152 chrX 16836736 intergenic not near genes chrX 16836812 intergenic not near genes chrX 16836888 intergenic not near genes chrX_7_16835001 chrX_16835001 RAL-176 2205 chrX 16936010 16936025 chrX 16936427 16936443 jockey 6 418 5.0 7.0 6.0 0.9 433 chrX 16936010 intron CG4928 + chrX 16936226 intron CG4928 + chrX 16936443 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-176 2206 chrX 17011970 17011988 chrX 17012048 17012066 5 79 3.5 5.0 4.2 1.0 96 chrX 17011970 intron CG45002 - chrX 17012018 intron CG45002 - chrX 17012066 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-176 2207 chrX 17195202 17195231 chrX 17200288 17200317 flea 6 5086 3.0 2.0 2.5 1.7 5115 chrX 17195202 3` UTR baz + chrX 17197760 3` UTR baz + chrX 17200317 3` UTR baz + chrX_6_17195001 chrX_17195001 RAL-176 2208 chrX 17229965 17229967 chrX 17230065 17230070 4 102 0.5 5.5 3.0 1.0 105 chrX 17229965 intergenic CG10597 - chrX 17230018 intergenic CG10597 - chrX 17230070 intergenic CG10597 - chrX_4_17230001 chrX_17230001 RAL-176 2209 chrX 17275533 17275565 chrX 17275610 17275643 12 68 6.0 7.0 6.5 1.6 110 chrX 17275533 intron f + chrX 17275588 intron f + chrX 17275643 intron f + chrX_12_17275001 chrX_17275001 RAL-176 2210 chrX 17290074 17290091 chrX 17290150 17290167 4 76 0.5 2.5 1.5 1.6 93 chrX 17290074 intron,intron CG5445 +,Fim - chrX 17290120 intron,intron CG5445 +,Fim - chrX 17290167 intron,intron CG5445 +,Fim - chrX_4_17290001 chrX_17290001 RAL-176 2211 chrX 17352590 17352620 chrX 17352693 17352723 10 103 2.5 2.5 2.5 2.9 133 chrX 17352590 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352723 intergenic not near genes chrX_10_17350001 chrX_17350001 RAL-176 2212 chrX 17373938 17373959 chrX 17374281 17374302 7 337 2.5 0.5 1.5 2.8 364 chrX 17373938 intergenic not near genes chrX 17374120 intergenic not near genes chrX 17374302 intergenic not near genes chrX_7_17370001 chrX_17370001 RAL-176 2213 chrX 17476469 17476490 chrX 17476537 17476542 12 66 4.0 0.5 2.2 3.8 73 chrX 17476469 intron CG43658 - chrX 17476506 intron CG43658 - chrX 17476542 intron CG43658 - chrX_12_17475001 chrX_17475001 RAL-176 2214 chrX 17502350 17502366 chrX 17502430 17502446 6 79 2.5 2.5 2.5 1.7 96 chrX 17502350 intron CG43658 - chrX 17502398 intron CG43658 - chrX 17502446 intron CG43658 - chrX_6_17500001 chrX_17500001 RAL-176 2215 chrX 17556948 17556963 chrX 17557440 17557440 mdg1 5 490 4.5 3.0 3.8 1.0 492 chrX 17556948 intron CG43658 - chrX 17557194 intron CG43658 - chrX 17557440 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-176 2216 chrX 17680893 17680915 chrX 17680965 17680992 18 75 5.0 5.5 5.2 2.9 99 chrX 17680893 intron chas - chrX 17680942 intron chas - chrX 17680992 intron chas - chrX_18_17680001 chrX_17680001 RAL-176 2217 chrX 17680920 17680925 chrX 17680984 17681000 4 73 3.0 11.0 7.0 0.5 80 chrX 17680920 intron chas - chrX 17680960 intron chas - chrX 17681000 intron chas - chrX_4_17680001 chrX_17680001 RAL-176 2218 chrX 17708845 17708858 chrX 17708924 17708937 5 79 0.0 10.0 5.0 0.8 92 chrX 17708845 intron CG8173 - chrX 17708891 intron CG8173 - chrX 17708937 intron CG8173 - chrX_5_17705001 chrX_17705001 RAL-176 2219 chrX 17731117 17731129 chrX 17731193 17731205 5 76 4.0 3.0 3.5 1.1 88 chrX 17731117 intron CG42684 + chrX 17731161 intron CG42684 + chrX 17731205 intron CG42684 + chrX_5_17730001 chrX_17730001 RAL-176 2220 chrX 17792966 17792983 chrX 17796262 17796279 flea 4 3296 2.5 6.5 4.5 0.7 3313 chrX 17792966 intron OdsH + chrX 17794622 intron OdsH + chrX 17796279 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-176 2221 chrX 17911861 17911877 chrX 17911949 17911965 4 88 0.5 2.0 1.2 1.8 104 chrX 17911861 intron CG6847 + chrX 17911913 intron CG6847 + chrX 17911965 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-176 2222 chrX 18020815 18020843 chrX 18020902 18020926 6 86 1.0 0.0 0.5 4.0 111 chrX 18020815 intron Sh - chrX 18020870 intron Sh - chrX 18020926 intron Sh - chrX_6_18020001 chrX_18020001 RAL-176 2223 chrX 18341627 18341657 chrX 18342002 18342032 13 374 5.0 5.5 5.2 2.1 405 chrX 18341627 intron CG6123 - chrX 18341830 intron CG6123 - chrX 18342032 intron CG6123 - chrX_13_18340001 chrX_18340001 RAL-176 2224 chrX 18350004 18350031 chrX 18350089 18350115 6 83 0.5 1.5 1.0 3.0 111 chrX 18350004 intron CG6123 - chrX 18350060 intron CG6123 - chrX 18350115 intron CG6123 - chrX_6_18350001 chrX_18350001 RAL-176 2225 chrX 6311381 6311383 chrX 18406121 18406124 4 12094740 21.5 14.5 18.0 0.2 12094743 chrX 6311381 intron CG15894 + chrX 12358752 intergenic not near genes chrX 18406124 intron CG32549 - chrX_4_12355001 chrX_12355001 RAL-176 2226 chrX 18427382 18427408 chrX 18427792 18427819 18 411 7.0 3.0 5.0 3.0 437 chrX 18427382 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427819 intergenic not near genes chrX_18_18425001 chrX_18425001 RAL-176 2227 chrX 18429501 18429527 chrX 18434807 18434838 Transpac 9 5310 3.0 7.0 5.0 1.5 5337 chrX 18429501 intergenic not near genes chrX 18432170 intergenic not near genes chrX 18434838 intergenic not near genes chrX_9_18430001 chrX_18430001 RAL-176 2228 chrX 18490044 18490057 chrX 18490199 18490212 10 154 8.5 8.0 8.2 1.1 168 chrX 18490044 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490212 intergenic not near genes chrX_10_18490001 chrX_18490001 RAL-176 2229 chrX 18550196 18550219 chrX 18550274 18550296 8 78 6.5 4.0 5.2 1.3 100 chrX 18550196 intron Bx + chrX 18550246 intron Bx + chrX 18550296 intron Bx + chrX_8_18550001 chrX_18550001 RAL-176 2230 chrX 18558193 18558226 chrX 18558270 18558302 12 76 3.0 3.0 3.0 3.0 109 chrX 18558193 intron Bx + chrX 18558248 intron Bx + chrX 18558302 intron Bx + chrX_12_18555001 chrX_18555001 RAL-176 2231 chrX 18582156 18582172 chrX 18582233 18582250 6 78 6.5 9.0 7.8 0.7 94 chrX 18582156 intergenic not near genes chrX 18582203 intergenic not near genes chrX 18582250 intergenic not near genes chrX_6_18580001 chrX_18580001 RAL-176 2232 chrX 18645012 18645048 chrX 18645110 18645146 22 97 4.5 3.5 4.0 4.4 134 chrX 18645012 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645146 intron Rip11 - chrX_22_18645001 chrX_18645001 RAL-176 2233 chrX 18698847 18698876 chrX 18698964 18698993 5 117 1.0 1.5 1.2 2.3 146 chrX 18698847 intergenic not near genes chrX 18698920 intergenic not near genes chrX 18698993 intergenic not near genes chrX_5_18695001 chrX_18695001 RAL-176 2234 chrX 18723526 18723555 chrX 18723948 18723975 20 420 4.5 4.5 4.5 3.6 449 chrX 18723526 intron CCKLR-17D1 - chrX 18723750 intron CCKLR-17D1 - chrX 18723975 intron CCKLR-17D1 - chrX_20_18720001 chrX_18720001 RAL-176 2235 chrX 18896517 18896546 chrX 18896627 18896657 11 111 3.5 2.0 2.8 2.9 140 chrX 18896517 3` UTR CG7349 + chrX 18896587 intergenic CG7349 + chrX 18896657 intergenic CG7349 + chrX_11_18895001 chrX_18895001 RAL-176 2236 chrX 18988681 18988714 chrX 18989120 18989154 10 438 3.5 2.0 2.8 2.6 473 chrX 18988681 intron CG43759 + chrX 18988918 intron CG43759 + chrX 18989154 intron CG43759 + chrX_10_18985001 chrX_18985001 RAL-176 2237 chrX 19036446 19036453 chrX 19036521 19036522 4 74 0.0 0.0 0.0 4.0 76 chrX 19036446 intergenic not near genes chrX 19036484 intergenic not near genes chrX 19036522 intergenic not near genes chrX_4_19035001 chrX_19035001 RAL-176 2238 chrX 19060412 19060434 chrX 19065196 19065218 Doc 12 4784 6.0 4.5 5.2 1.9 4806 chrX 19060412 intron CG14190 + chrX 19062815 intron CG14190 + chrX 19065218 intron CG14190 + chrX_12_19060001 chrX_19060001 RAL-176 2239 chrX 19084104 19084123 chrX 19084219 19084243 7 119 0.5 2.0 1.2 3.2 139 chrX 19084104 intergenic CR45503 + chrX 19084174 intergenic CR45503 + chrX 19084243 intergenic CR45503 + chrX_7_19080001 chrX_19080001 RAL-176 2240 chrX 19106025 19106044 chrX 19106242 19106261 6 216 4.5 2.5 3.5 1.3 236 chrX 19106025 intergenic not near genes chrX 19106143 intergenic not near genes chrX 19106261 intergenic not near genes chrX_6_19105001 chrX_19105001 RAL-176 2241 chrX 19109114 19109136 chrX 19109298 19109320 11 182 0.5 3.5 2.0 3.7 206 chrX 19109114 intergenic not near genes chrX 19109217 intergenic not near genes chrX 19109320 intergenic not near genes chrX_11_19105001 chrX_19105001 RAL-176 2242 chrX 19127214 19127237 chrX 19127295 19127311 11 82 2.0 5.5 3.8 2.3 97 chrX 19127214 exon tgy - chrX 19127262 exon tgy - chrX 19127311 5` UTR tgy - chrX_11_19125001 chrX_19125001 RAL-176 2243 chrX 19162667 19162699 chrX 19162750 19162783 18 81 4.0 7.0 5.5 2.8 116 chrX 19162667 intron RhoGAP18B - chrX 19162725 intron RhoGAP18B - chrX 19162783 intron RhoGAP18B - chrX_18_19160001 chrX_19160001 RAL-176 2244 chrX 19187513 19187543 chrX 19187595 19187606 36 76 9.0 19.0 14.0 2.4 93 chrX 19187513 intergenic CG33253 + chrX 19187560 intergenic CG33253 +,Mec2 + chrX 19187606 intergenic CG33253 +,Mec2 + chrX_36_19185001 chrX_19185001 RAL-176 2245 chrX 13057298 13057300 chrX 19242812 19242814 16 6185514 4.0 6.0 5.0 2.7 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_16_16150001 chrX_16150001 RAL-176 2246 chrX 19356989 19357016 chrX 19358430 19358457 NOF 6 1441 5.0 1.5 3.2 1.4 1468 chrX 19356989 intron kek5 + chrX 19357723 intron kek5 + chrX 19358457 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-176 2247 chrX 19369481 19369516 chrX 19369568 19369584 8 79 3.0 5.5 4.2 1.5 103 chrX 19369481 intron kek5 + chrX 19369532 intron kek5 + chrX 19369584 intron kek5 + chrX_8_19365001 chrX_19365001 RAL-176 2248 chrX 19380162 19380187 chrX 19380396 19380427 pogo 6 240 5.5 2.5 4.0 1.2 265 chrX 19380162 intron kek5 + chrX 19380294 intron kek5 + chrX 19380427 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-176 2249 chrX 19472119 19472159 chrX 19472689 19472728 jockey 23 569 8.0 7.0 7.5 2.7 609 chrX 19472119 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472728 intergenic not near genes chrX_23_19470001 chrX_19470001 RAL-176 2250 chrX 19500720 19500750 chrX 19500807 19500837 7 87 0.0 6.0 3.0 1.8 117 chrX 19500720 intron,intron CG14200 +,Pfrx + chrX 19500778 intron,intron CG14200 +,Pfrx + chrX 19500837 intron,intron CG14200 +,Pfrx + chrX_7_19500001 chrX_19500001 RAL-176 2251 chrX 19576564 19576592 chrX 19576642 19576655 24 77 6.0 11.0 8.5 2.5 91 chrX 19576564 intron Tao - chrX 19576610 intron Tao - chrX 19576655 intron Tao - chrX_24_19575001 chrX_19575001 RAL-176 2252 chrX 19593952 19593978 chrX 19594037 19594063 19 85 7.0 11.5 9.2 1.9 111 chrX 19593952 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594063 intron CG14205 + chrX_19_19590001 chrX_19590001 RAL-176 2253 chrX 19662035 19662057 chrX 19662255 19662280 20 222 2.5 9.5 6.0 2.9 245 chrX 19662035 intron CG14223 - chrX 19662158 intron CG14223 - chrX 19662280 intron CG14223 - chrX_20_19660001 chrX_19660001 RAL-176 2254 chrX 19707853 19707865 chrX 19707929 19707941 4 76 1.0 1.5 1.2 1.8 88 chrX 19707853 intron meso18E - chrX 19707897 intron meso18E - chrX 19707941 intron meso18E - chrX_4_19705001 chrX_19705001 RAL-176 2255 chrX 19710075 19710103 chrX 19711857 19711887 S-element 29 1785 6.0 12.0 9.0 2.9 1812 chrX 19710075 intron meso18E - chrX 19710981 intron meso18E - chrX 19711887 intron meso18E - chrX_29_19710001 chrX_19710001 RAL-176 2256 chrX 19884102 19884114 chrX 19884165 19884190 5 72 3.5 4.0 3.8 1.0 88 chrX 19884102 intron Hers + chrX 19884146 intron Hers + chrX 19884190 intron Hers + chrX_5_19880001 chrX_19880001 RAL-176 2257 chrX 19983868 19983900 chrX 19983947 19983980 5 79 1.5 2.0 1.8 1.8 112 chrX 19983868 intergenic not near genes chrX 19983924 intergenic not near genes chrX 19983980 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-176 2258 chrX 19992422 19992432 chrX 19992498 19992507 4 76 12.0 5.5 8.8 0.4 85 chrX 19992422 intergenic not near genes chrX 19992464 intergenic not near genes chrX 19992507 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-176 2259 chrX 20007989 20008002 chrX 20008087 20008098 4 98 13.0 0.0 6.5 0.5 109 chrX 20007989 intron Dop2R - chrX 20008044 intron Dop2R - chrX 20008098 intron Dop2R - chrX_4_20005001 chrX_20005001 RAL-176 2260 chrX 20086571 20086579 chrX 20086656 20086665 4 85 4.5 2.0 3.2 1.0 94 chrX 20086571 intergenic not near genes chrX 20086618 intergenic not near genes chrX 20086665 intergenic not near genes chrX_4_20085001 chrX_20085001 RAL-176 2261 chrX 20086583 20086590 chrX 20086655 20086676 4 82 4.5 2.0 3.2 1.0 93 chrX 20086583 intergenic not near genes chrX 20086630 intergenic not near genes chrX 20086676 intergenic not near genes chrX_4_20085001 chrX_20085001 RAL-176 2262 chrX 20103955 20103986 chrX 20104045 20104076 7 89 1.5 1.5 1.5 2.8 121 chrX 20103955 intergenic not near genes chrX 20104016 intergenic not near genes chrX 20104076 intergenic not near genes chrX_7_20100001 chrX_20100001 RAL-176 2263 chrX 20105195 20105231 chrX 20105298 20105334 19 104 43.0 46.5 44.8 0.4 139 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105334 intergenic not near genes chrX_19_20105001 chrX_20105001 RAL-176 2264 chrX 20133161 20133175 chrX 20133274 20133288 7 113 4.0 5.5 4.8 1.2 127 chrX 20133161 intergenic CG15322 + chrX 20133224 intergenic CG15322 + chrX 20133288 intergenic CG15322 + chrX_7_20130001 chrX_20130001 RAL-176 2265 chrX 20259359 20259374 chrX 20446508 20446515 7 187148 35.5 0.5 18.0 0.4 187156 chrX 20259359 exon CG42577 + chrX 20352937 intergenic not near genes chrX 20446515 exon CG42578 + chrX_7_20350001 chrX_20350001 RAL-176 2266 chrX 20312880 20312911 chrX 20312958 20312989 13 78 2.0 1.0 1.5 5.2 109 chrX 20312880 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312989 intron CG1504 - chrX_13_20310001 chrX_20310001 RAL-176 2267 chrX 20359135 20359172 chrX 20359213 20359250 10 75 3.0 4.0 3.5 2.2 115 chrX 20359135 intergenic not near genes chrX 20359192 intergenic not near genes chrX 20359250 intergenic not near genes chrX_10_20355001 chrX_20355001 RAL-176 2268 chrX 20377326 20377349 chrX 20378792 20378816 hobo 18 1466 11.5 7.5 9.5 1.7 1490 chrX 20377326 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378816 intergenic not near genes chrX_18_20375001 chrX_20375001 RAL-176 2269 chrX 20443173 20443205 chrX 20443248 20443281 10 76 4.0 1.0 2.5 2.9 108 chrX 20443173 exon CG1695 + chrX 20443227 intron CG1695 + chrX 20443281 intron CG1695 + chrX_10_20440001 chrX_20440001 RAL-176 2270 chrX 20504129 20504157 chrX 20505649 20505678 transib2 9 1521 2.5 4.5 3.5 2.0 1549 chrX 20504129 intron RhoGAP19D - chrX 20504904 intron RhoGAP19D - chrX 20505678 intron RhoGAP19D - chrX_9_20500001 chrX_20500001 RAL-176 2271 chrX 20528599 20528628 chrX 20528947 20528976 5 348 2.0 1.5 1.8 1.8 377 chrX 20528599 intergenic not near genes chrX 20528788 intergenic not near genes chrX 20528976 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-176 2272 chrX 20539485 20539517 chrX 20539822 20539838 10 332 1.0 8.0 4.5 1.8 353 chrX 20539485 intron RunxB + chrX 20539662 intron RunxB + chrX 20539838 intron RunxB + chrX_10_20535001 chrX_20535001 RAL-176 2273 chrX 20570782 20570791 chrX 20570867 20570876 4 85 2.5 1.0 1.8 1.4 94 chrX 20570782 intergenic not near genes chrX 20570829 intergenic not near genes chrX 20570876 intergenic not near genes chrX_4_20570001 chrX_20570001 RAL-176 2274 chrX 20662319 20662327 chrX 20662402 20662410 4 83 2.5 0.0 1.2 1.8 91 chrX 20662319 intron CG1835 + chrX 20662364 intron CG1835 + chrX 20662410 intron CG1835 + chrX_4_20660001 chrX_20660001 RAL-176 2275 chrX 20836046 20836078 chrX 20836134 20836165 10 88 6.0 1.5 3.8 2.1 119 chrX 20836046 intron shakB - chrX 20836106 intron shakB - chrX 20836165 intron shakB - chrX_10_20835001 chrX_20835001 RAL-176 2276 chrX 20836725 20836746 chrX 20844327 20844348 roo 6 7601 1.5 1.5 1.5 2.4 7623 chrX 20836725 intron shakB - chrX 20840536 intron shakB - chrX 20844348 intron shakB - chrX_6_20840001 chrX_20840001 RAL-176 2277 chrX 20940717 20940754 chrX 20942186 20942223 hobo 22 1468 8.0 7.0 7.5 2.6 1506 chrX 20940717 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942223 intergenic not near genes chrX_22_20940001 chrX_20940001 RAL-176 2278 chrX 21029176 21029179 chrX 21029390 21029396 4 215 1.0 11.5 6.2 0.6 220 chrX 21029176 3` UTR CG1529 - chrX 21029286 3` UTR CG1529 - chrX 21029396 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-176 2279 chrX 21076345 21076358 chrX 21076411 21076436 5 76 1.0 0.0 0.5 3.3 91 chrX 21076345 intron bves + chrX 21076390 intron bves + chrX 21076436 intron bves + chrX_5_21075001 chrX_21075001 RAL-176 2280 chrX 21086130 21086165 chrX 21087159 21087194 jockey 11 1029 2.0 3.0 2.5 3.1 1064 chrX 21086130 intergenic not near genes chrX 21086662 intergenic not near genes chrX 21087194 intergenic not near genes chrX_11_21085001 chrX_21085001 RAL-176 2281 chrX 21092758 21092791 chrX 21092840 21092873 21 81 3.5 7.5 5.5 3.2 115 chrX 21092758 intergenic not near genes chrX 21092816 intergenic not near genes chrX 21092873 intergenic not near genes chrX_21_21090001 chrX_21090001 RAL-176 2282 chrX 21184189 21184195 chrX 21184262 21184284 8 84 0.0 5.5 2.8 2.1 95 chrX 21184189 intergenic not near genes chrX 21184236 intergenic not near genes chrX 21184284 intergenic not near genes chrX_8_21180001 chrX_21180001 RAL-176 2283 chrX 21188839 21188872 chrX 21188927 21188960 6 88 3.5 2.5 3.0 1.5 121 chrX 21188839 intergenic CR45506 + chrX 21188900 intergenic CR45506 + chrX 21188960 intergenic CR45506 + chrX_6_21185001 chrX_21185001 RAL-176 2284 chrX 21253284 21253302 chrX 21253361 21253378 7 77 12.0 12.5 12.2 0.5 94 chrX 21253284 intron CG32521 - chrX 21253331 intron CG32521 - chrX 21253378 intron CG32521 - chrX_7_21250001 chrX_21250001 RAL-176 2285 chrX 21264735 21264760 chrX 21264811 21264836 11 75 6.5 5.5 6.0 1.6 101 chrX 21264735 intron CG32521 - chrX 21264786 intron CG32521 - chrX 21264836 intron CG32521 - chrX_11_21260001 chrX_21260001 RAL-176 2286 chrX 21455213 21455224 chrX 21455392 21455402 4 178 4.5 0.0 2.2 1.2 189 chrX 21455213 intron CG42343 - chrX 21455308 intron CG42343 - chrX 21455402 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-176 2287 chrX 21464947 21464957 chrX 21465026 21465036 6 79 8.0 4.5 6.2 0.8 89 chrX 21464947 intergenic not near genes chrX 21464992 intergenic not near genes chrX 21465036 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-176 2288 chrX 21511060 21511070 chrX 21511157 21511158 6 98 1.5 5.5 3.5 1.3 98 chrX 21511060 intron CR45082 - chrX 21511109 intron CR45082 - chrX 21511158 intron CR45082 - chrX_6_21510001 chrX_21510001 RAL-176 2289 chrX 5604679 5604682 chrX 21605829 21605831 4 16001149 20.0 11.5 15.8 0.2 16001152 chrX 5604679 intron Vsx1 + chrX 13605255 intron CR44654 + chrX 21605831 intergenic CG17450 - chrX_4_13605001 chrX_13605001 RAL-176 2290 chrX 21668262 21668286 chrX 21668345 21668371 4 84 5.0 4.0 4.5 0.7 109 chrX 21668262 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668371 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-176 2291 chrX 22478873 22478898 chrX 22479006 22479031 9 133 2.5 3.5 3.0 2.2 158 chrX 22478873 intron CG12576 - chrX 22478952 intron CG12576 - chrX 22479031 intron CG12576 - chrX_9_22475001 chrX_22475001 RAL-176 2292 chrX 22522644 22522653 chrX 22525464 22525471 NOF 4 2820 3.0 0.0 1.5 1.6 2827 chrX 22522644 intron CG17600 + chrX 22524058 intron CG17600 + chrX 22525471 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-176 2293 chrX 22574809 22574831 chrX 22575044 22575066 5 235 1.0 2.5 1.8 1.8 257 chrX 22574809 intergenic not near genes chrX 22574938 intergenic not near genes chrX 22575066 intergenic not near genes chrX_5_22570001 chrX_22570001 RAL-176 2294 chrX 22661980 22662005 chrX 22662079 22662104 5 99 0.0 0.0 0.0 5.0 124 chrX 22661980 intron CR44997 + chrX 22662042 intron CR44997 + chrX 22662104 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-176 2295 chrX 22764375 22764395 chrX 22764471 22764491 6 96 3.0 2.5 2.8 1.6 116 chrX 22764375 intron CR44997 + chrX 22764433 intron CR44997 + chrX 22764491 intron CR44997 + chrX_6_22760001 chrX_22760001 RAL-176 2296 chrX 22771506 22771531 chrX 22774796 22774822 297 6 3291 2.0 1.0 1.5 2.4 3316 chrX 22771506 intron CR44997 + chrX 22773164 intron CR44997 + chrX 22774822 intron CR44997 + chrX_6_22770001 chrX_22770001 RAL-176 2297 chrX 22870874 22870901 chrX 22870965 22870991 18 88 5.0 9.0 7.0 2.2 117 chrX 22870874 intron,3` UTR CG42346 +,CR43656 - chrX 22870932 intron,3` UTR CG42346 +,CR43656 - chrX 22870991 intron,3` UTR CG42346 +,CR43656 - chrX_18_22870001 chrX_22870001 RAL-176 2298 chrX 22996310 22996333 chrX 23003544 23003567 roo 8 7234 2.5 5.0 3.8 1.7 7257 chrX 22996310 intron,intron stnA -,stnB - chrX 22999938 intron,intron stnA -,stnB - chrX 23003567 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-176 2299 chrX 16243793 16243796 chrX 23283781 23283784 4 7039988 3.0 704.5 353.8 0.0 7039991 chrX 16243793 intergenic not near genes chrX 19763788 intron CG12702 - chrX 23283784 3` UTR CR40976 - chrX_4_19760001 chrX_19760001 RAL-176 2300 chrY 975603 975818 chrY 975720 975878 8 90 126.0 141.5 133.8 0.1 275 chrY 975603 intergenic not near genes chrY 975740 intergenic not near genes chrY 975878 intergenic not near genes chrY_8_975001 chrY_975001 RAL-176