SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47488 chr2L 52565 52593 jockey 8 5104 2.0 0.5 1.2 3.6 5129 chr2L 47464 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-161 2 chr2L 91174 91206 chr2L 91250 91282 9 76 3.5 1.5 2.5 2.6 108 chr2L 91174 intergenic not near genes chr2L 91228 intergenic not near genes chr2L 91282 intergenic not near genes chr2L_9_90001 chr2L_90001 RAL-161 3 chr2L 119735 119762 chr2L 119812 119839 4 77 0.5 1.5 1.0 2.0 104 chr2L 119735 intron,intron CG11455 +,CG4822 - chr2L 119787 intron,intron CG11455 +,CG4822 - chr2L 119839 intron,exon CG11455 +,CG4822 - chr2L_4_115001 chr2L_115001 RAL-161 4 chr2L 127505 127521 chr2L 127600 127616 8 94 2.0 3.5 2.8 2.1 111 chr2L 127505 intron,intron CG11455 +,CG3164 - chr2L 127560 intron,intron CG11455 +,CG3164 - chr2L 127616 intron,intron CG11455 +,CG3164 - chr2L_8_125001 chr2L_125001 RAL-161 5 chr2L 179463 179487 chr2L 179546 179569 6 80 2.0 1.5 1.8 2.1 106 chr2L 179463 intron spen + chr2L 179516 intron spen + chr2L 179569 intron spen + chr2L_6_175001 chr2L_175001 RAL-161 6 chr2L 180308 180324 chr2L 180463 180492 6 165 3.5 1.5 2.5 1.7 184 chr2L 180308 intron spen + chr2L 180400 intron spen + chr2L 180492 intron spen + chr2L_6_180001 chr2L_180001 RAL-161 7 chr2L 263310 263518 chr2L 263455 263609 8 92 3.0 3.0 3.0 2.0 299 chr2L 263310 intron,3` UTR CG3645 -,CG17075 - chr2L 263460 intron,3` UTR CG3645 -,CG17075 - chr2L 263609 intron,3` UTR CG3645 -,CG17075 - chr2L_8_260001 chr2L_260001 RAL-161 8 chr2L 297684 297719 chr2L 297784 297818 9 98 1.0 3.5 2.2 2.8 134 chr2L 297684 intergenic Pi3K21B +,Hop + chr2L 297751 intergenic Pi3K21B +,Hop + chr2L 297818 intergenic Pi3K21B +,Hop + chr2L_9_295001 chr2L_295001 RAL-161 9 chr2L 347887 347903 chr2L 355387 355403 blood 4 7499 0.0 0.0 0.0 4.0 7516 chr2L 347887 3` UTR Plc21C + chr2L 351645 intron Plc21C + chr2L 355403 3` UTR Plc21C + chr2L_4_350001 chr2L_350001 RAL-161 10 chr2L 480986 480999 chr2L 481085 481099 6 101 2.0 2.0 2.0 2.0 113 chr2L 480986 intron ush + chr2L 481042 intron ush + chr2L 481099 intron ush + chr2L_6_480001 chr2L_480001 RAL-161 11 chr2L 504625 504647 chr2L 504707 504736 5 82 4.5 3.0 3.8 1.0 111 chr2L 504625 intron ush + chr2L 504680 intron ush + chr2L 504736 intron ush + chr2L_5_500001 chr2L_500001 RAL-161 12 chr2L 727168 727199 chr2L 727245 727249 12 73 4.0 3.0 3.5 2.7 81 chr2L 727168 intergenic not near genes chr2L 727208 intergenic not near genes chr2L 727249 intergenic not near genes chr2L_12_725001 chr2L_725001 RAL-161 13 chr2L 770465 770487 chr2L 772245 772268 Bari1 6 1779 5.0 1.5 3.2 1.4 1803 chr2L 770465 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772268 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-161 14 chr2L 781079 781091 chr2L 781138 781180 4 73 3.5 0.0 1.8 1.4 101 chr2L 781079 5` UTR Gr21a + chr2L 781130 5` UTR Gr21a + chr2L 781180 5` UTR Gr21a + chr2L_4_780001 chr2L_780001 RAL-161 15 chr2L 848611 848643 chr2L 848694 848719 10 82 3.5 4.5 4.0 2.0 108 chr2L 848611 intron drongo - chr2L 848665 intron drongo - chr2L 848719 intron drongo - chr2L_10_845001 chr2L_845001 RAL-161 16 chr2L 1066650 1066680 chr2L 1066935 1066943 11 278 3.5 4.5 4.0 2.2 293 chr2L 1066650 intron S - chr2L 1066796 intron S - chr2L 1066943 intron S - chr2L_11_1065001 chr2L_1065001 RAL-161 17 chr2L 1182318 1182350 chr2L 1182394 1182427 6 74 0.5 1.0 0.8 3.3 109 chr2L 1182318 3` UTR,3` UTR CG4896 +,CG5126 - chr2L 1182372 3` UTR,3` UTR CG4896 +,CG5126 - chr2L 1182427 3` UTR,3` UTR CG4896 +,CG5126 - chr2L_6_1180001 chr2L_1180001 RAL-161 18 chr2L 1186282 1186315 chr2L 1186359 1186393 9 75 2.0 3.5 2.8 2.4 111 chr2L 1186282 intron CG5001 + chr2L 1186338 intron CG5001 + chr2L 1186393 intron CG5001 + chr2L_9_1185001 chr2L_1185001 RAL-161 19 chr2L 1192679 1192694 chr2L 1192782 1192797 6 102 2.0 3.5 2.8 1.6 118 chr2L 1192679 intron CG5001 + chr2L 1192738 intron CG5001 + chr2L 1192797 intron CG5001 + chr2L_6_1190001 chr2L_1190001 RAL-161 20 chr2L 1300740 1300761 chr2L 1300830 1300851 4 90 0.5 2.0 1.2 1.8 111 chr2L 1300740 intergenic not near genes chr2L 1300796 intergenic not near genes chr2L 1300851 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-161 21 chr2L 1332890 1332911 chr2L 1332979 1333000 5 89 1.5 3.5 2.5 1.4 110 chr2L 1332890 intergenic not near genes chr2L 1332945 intergenic not near genes chr2L 1333000 intergenic not near genes chr2L_5_1330001 chr2L_1330001 RAL-161 22 chr2L 1379602 1379613 chr2L 1379679 1379690 4 76 6.0 4.5 5.2 0.6 88 chr2L 1379602 intergenic CR44898 -,lea - chr2L 1379646 intergenic CR44898 -,lea - chr2L 1379690 intergenic CR44898 -,lea - chr2L_4_1375001 chr2L_1375001 RAL-161 23 chr2L 1469196 1469228 chr2L 1469299 1469330 6 101 2.0 2.5 2.2 1.9 134 chr2L 1469196 intergenic not near genes chr2L 1469263 intergenic not near genes chr2L 1469330 intergenic not near genes chr2L_6_1465001 chr2L_1465001 RAL-161 24 chr2L 1521300 1521325 chr2L 1523436 1523467 4 2141 1.5 0.0 0.8 2.2 2167 chr2L 1521300 exon Or22a + chr2L 1522384 intergenic Or22a +,Or22b + chr2L 1523467 exon Or22b + chr2L_4_1520001 chr2L_1520001 RAL-161 25 chr2L 1536500 1536526 chr2L 1536632 1536658 7 132 0.0 2.5 1.2 3.2 158 chr2L 1536500 intergenic not near genes chr2L 1536579 intergenic not near genes chr2L 1536658 intergenic not near genes chr2L_7_1535001 chr2L_1535001 RAL-161 26 chr2L 1552238 1552262 chr2L 1552325 1552350 5 88 1.0 0.5 0.8 2.8 112 chr2L 1552238 intergenic not near genes chr2L 1552294 intergenic not near genes chr2L 1552350 intergenic not near genes chr2L_5_1550001 chr2L_1550001 RAL-161 27 chr2L 1570685 1570709 chr2L 1573557 1573581 F-element 5 2872 3.0 1.0 2.0 1.7 2896 chr2L 1570685 intron haf + chr2L 1572133 intron haf + chr2L 1573581 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-161 28 chr2L 1590960 1590991 chr2L 1591036 1591067 14 74 2.5 1.5 2.0 4.7 107 chr2L 1590960 intron haf + chr2L 1591014 intron haf + chr2L 1591067 intron haf + chr2L_14_1590001 chr2L_1590001 RAL-161 29 chr2L 1790716 1790740 chr2L 1791171 1791195 4 455 0.5 0.5 0.5 2.7 479 chr2L 1790716 exon Gr22c - chr2L 1790956 exon Gr22c - chr2L 1791195 exon Gr22c - chr2L_4_1790001 chr2L_1790001 RAL-161 30 chr2L 1828998 1829010 chr2L 1829065 1829094 6 81 1.5 1.5 1.5 2.4 96 chr2L 1828998 intergenic not near genes chr2L 1829046 intergenic not near genes chr2L 1829094 intergenic not near genes chr2L_6_1825001 chr2L_1825001 RAL-161 31 chr2L 1901518 1901529 chr2L 1901568 1901597 7 62 2.0 3.0 2.5 2.0 79 chr2L 1901518 intron CG7337 + chr2L 1901558 intron CG7337 + chr2L 1901597 intron CG7337 + chr2L_7_1900001 chr2L_1900001 RAL-161 32 chr2L 2014051 2014071 chr2L 2014146 2014165 6 95 3.0 1.0 2.0 2.0 114 chr2L 2014051 intron CG4238 + chr2L 2014108 intron CG4238 + chr2L 2014165 intron CG4238 + chr2L_6_2010001 chr2L_2010001 RAL-161 33 chr2L 2100378 2100405 chr2L 2109525 2109553 roo 11 9150 0.5 3.0 1.8 3.9 9175 chr2L 2100378 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109553 intron dpr3 - chr2L_11_2100001 chr2L_2100001 RAL-161 34 chr2L 2112123 2112145 chr2L 2119776 2119807 opus 7 7655 0.0 2.0 1.0 3.5 7684 chr2L 2112123 intergenic not near genes chr2L 2115965 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_7_2115001 chr2L_2115001 RAL-161 35 chr2L 2207667 2207693 chr2L 2207747 2207774 6 78 4.5 2.5 3.5 1.3 107 chr2L 2207667 exon CG33124 - chr2L 2207720 exon CG33124 - chr2L 2207774 exon CG33124 - chr2L_6_2205001 chr2L_2205001 RAL-161 36 chr2L 2503535 2503557 chr2L 2503630 2503642 4 93 4.0 2.5 3.2 1.0 107 chr2L 2503535 intergenic not near genes chr2L 2503588 intergenic not near genes chr2L 2503642 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-161 37 chr2L 2552737 2552775 chr2L 2552817 2552855 8 79 3.5 1.0 2.2 2.5 118 chr2L 2552737 exon CG3515 - chr2L 2552796 5` UTR CG3515 - chr2L 2552855 intergenic CG3515 - chr2L_8_2550001 chr2L_2550001 RAL-161 38 chr2L 2637227 2637259 chr2L 2637325 2637357 8 98 2.5 3.5 3.0 2.0 130 chr2L 2637227 intergenic not near genes chr2L 2637292 intergenic not near genes chr2L 2637357 intergenic not near genes chr2L_8_2635001 chr2L_2635001 RAL-161 39 chr2L 2667623 2667658 chr2L 2667702 2667727 5 75 3.0 2.0 2.5 1.4 104 chr2L 2667623 intergenic not near genes chr2L 2667675 intergenic not near genes chr2L 2667727 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-161 40 chr2L 2753645 2753656 chr2L 2753741 2753752 4 97 5.5 1.0 3.2 1.0 107 chr2L 2753645 exon Bacc + chr2L 2753698 intron Bacc + chr2L 2753752 intron Bacc + chr2L_4_2750001 chr2L_2750001 RAL-161 41 chr2L 2975640 2975675 chr2L 2978945 2978982 12 3311 34.0 51.5 42.8 0.3 3342 chr2L 2975640 exon CG9641 - chr2L 2977311 exon CG3165 + chr2L 2978982 exon CG9643 - chr2L_12_2975001 chr2L_2975001 RAL-161 42 chr2L 3001601 3001628 chr2L 3001683 3001710 6 82 3.5 1.0 2.2 1.9 109 chr2L 3001601 intron CG17265 + chr2L 3001656 intron CG17265 + chr2L 3001710 intron CG17265 + chr2L_6_3000001 chr2L_3000001 RAL-161 43 chr2L 3073011 3073025 chr2L 3078234 3078248 copia 4 5223 0.5 2.5 1.5 1.6 5237 chr2L 3073011 intron toc - chr2L 3075630 intron toc - chr2L 3078248 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-161 44 chr2L 3108868 3108898 chr2L 3108945 3108975 10 77 1.5 3.0 2.2 3.1 107 chr2L 3108868 intron toc - chr2L 3108922 intron toc - chr2L 3108975 intron toc - chr2L_10_3105001 chr2L_3105001 RAL-161 45 chr2L 3171184 3171214 chr2L 3171488 3171518 5 304 2.5 0.5 1.5 2.0 334 chr2L 3171184 intergenic CG44002 - chr2L 3171351 intergenic CG44002 - chr2L 3171518 intergenic CG44002 - chr2L_5_3170001 chr2L_3170001 RAL-161 46 chr2L 3181297 3181304 chr2L 3181383 3181390 4 86 1.0 1.0 1.0 2.0 93 chr2L 3181297 intron CG34393 - chr2L 3181344 intron CG34393 - chr2L 3181390 intron CG34393 - chr2L_4_3180001 chr2L_3180001 RAL-161 47 chr2L 3192224 3192242 chr2L 3192333 3192352 6 106 2.5 3.0 2.8 1.6 128 chr2L 3192224 intron CG34393 - chr2L 3192288 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-161 48 chr2L 3251499 3251514 chr2L 3259064 3259078 springer 5 7564 1.5 3.5 2.5 1.4 7579 chr2L 3251499 intergenic not near genes chr2L 3255288 intergenic not near genes chr2L 3259078 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-161 49 chr2L 3291254 3291268 chr2L 3291325 3291342 5 77 1.5 3.5 2.5 1.4 88 chr2L 3291254 3` UTR CG9664 - chr2L 3291298 3` UTR CG9664 - chr2L 3291342 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-161 50 chr2L 3319333 3319356 chr2L 3319416 3319438 4 81 3.5 3.0 3.2 1.0 105 chr2L 3319333 exon CG3326 - chr2L 3319386 exon CG3326 - chr2L 3319438 exon CG3326 - chr2L_4_3315001 chr2L_3315001 RAL-161 51 chr2L 3367014 3367040 chr2L 3367164 3367190 11 150 1.5 3.5 2.5 3.1 176 chr2L 3367014 intron CG34394 - chr2L 3367102 intron CG34394 - chr2L 3367190 intron CG34394 - chr2L_11_3365001 chr2L_3365001 RAL-161 52 chr2L 3426410 3426437 chr2L 3426522 3426550 7 113 3.5 1.0 2.2 2.2 140 chr2L 3426410 intron pgant2 - chr2L 3426480 intron pgant2 - chr2L 3426550 5` UTR pgant2 - chr2L_7_3425001 chr2L_3425001 RAL-161 53 chr2L 3439423 3439450 chr2L 3439510 3439535 6 87 1.0 0.0 0.5 4.0 112 chr2L 3439423 intergenic not near genes chr2L 3439479 intergenic not near genes chr2L 3439535 intergenic not near genes chr2L_6_3435001 chr2L_3435001 RAL-161 54 chr2L 3494422 3494446 chr2L 3494545 3494568 6 123 1.5 0.0 0.8 3.3 146 chr2L 3494422 3` UTR tim - chr2L 3494495 3` UTR tim - chr2L 3494568 3` UTR tim - chr2L_6_3490001 chr2L_3490001 RAL-161 55 chr2L 3494449 3494454 chr2L 3494543 3494577 4 108 1.0 0.0 0.5 2.7 128 chr2L 3494449 3` UTR tim - chr2L 3494513 3` UTR tim - chr2L 3494577 3` UTR tim - chr2L_4_3490001 chr2L_3490001 RAL-161 56 chr2L 3819048 3819051 chr2L 3819129 3819133 5 82 1.0 0.0 0.5 3.3 85 chr2L 3819048 intergenic not near genes chr2L 3819090 intergenic not near genes chr2L 3819133 intergenic not near genes chr2L_5_3815001 chr2L_3815001 RAL-161 57 chr2L 3894171 3894186 chr2L 3894248 3894264 6 77 2.5 0.5 1.5 2.4 93 chr2L 3894171 intron capu - chr2L 3894218 intron capu - chr2L 3894264 intron capu - chr2L_6_3890001 chr2L_3890001 RAL-161 58 chr2L 3952145 3952154 chr2L 3952272 3952282 5 128 1.5 5.0 3.2 1.2 137 chr2L 3952145 intron fred - chr2L 3952214 intron fred - chr2L 3952282 intron fred - chr2L_5_3950001 chr2L_3950001 RAL-161 59 chr2L 3999182 3999199 chr2L 3999265 3999282 5 83 4.0 4.5 4.2 1.0 100 chr2L 3999182 intergenic not near genes chr2L 3999232 intergenic not near genes chr2L 3999282 intergenic not near genes chr2L_5_3995001 chr2L_3995001 RAL-161 60 chr2L 4047081 4047090 chr2L 4047394 4047403 4 313 6.0 1.0 3.5 0.9 322 chr2L 4047081 intron ed + chr2L 4047242 intron ed + chr2L 4047403 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-161 61 chr2L 4066043 4066064 chr2L 4068868 4068888 Juan 5 2825 3.0 3.5 3.2 1.2 2845 chr2L 4066043 intron ed + chr2L 4067466 intron ed + chr2L 4068888 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-161 62 chr2L 4131059 4131089 chr2L 4131458 4131488 7 399 0.0 3.5 1.8 2.5 429 chr2L 4131059 intergenic not near genes chr2L 4131274 intergenic not near genes chr2L 4131488 intergenic not near genes chr2L_7_4130001 chr2L_4130001 RAL-161 63 chr2L 4159470 4159483 chr2L 4159551 4159568 4 83 0.0 2.5 1.2 1.8 98 chr2L 4159470 intergenic not near genes chr2L 4159519 intergenic not near genes chr2L 4159568 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-161 64 chr2L 4166380 4166411 chr2L 4166463 4166494 11 83 1.5 4.0 2.8 2.9 114 chr2L 4166380 intergenic Or24a - chr2L 4166437 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_11_4165001 chr2L_4165001 RAL-161 65 chr2L 4186318 4186342 chr2L 4186398 4186419 6 78 4.5 4.5 4.5 1.1 101 chr2L 4186318 3` UTR CG31961 - chr2L 4186368 3` UTR CG31961 - chr2L 4186419 exon CG31961 - chr2L_6_4185001 chr2L_4185001 RAL-161 66 chr2L 4297091 4297127 chr2L 4297246 4297282 5 150 3.5 2.5 3.0 1.2 191 chr2L 4297091 intron tutl + chr2L 4297186 intron tutl + chr2L 4297282 intron tutl + chr2L_5_4295001 chr2L_4295001 RAL-161 67 chr2L 4477133 4477165 chr2L 4477326 4477358 11 197 22.5 8.5 15.5 0.7 225 chr2L 4477133 intergenic ine -,dp - chr2L 4477246 intergenic dp -,ine - chr2L 4477358 intergenic dp -,ine - chr2L_11_4475001 chr2L_4475001 RAL-161 68 chr2L 4622057 4622061 chr2L 4622139 4622143 4 82 1.5 1.0 1.2 1.8 86 chr2L 4622057 intergenic not near genes chr2L 4622100 intergenic not near genes chr2L 4622143 intergenic not near genes chr2L_4_4620001 chr2L_4620001 RAL-161 69 chr2L 4672087 4672098 chr2L 4672164 4672175 6 77 0.5 2.0 1.2 2.7 88 chr2L 4672087 intergenic not near genes chr2L 4672131 intergenic not near genes chr2L 4672175 intergenic not near genes chr2L_6_4670001 chr2L_4670001 RAL-161 70 chr2L 4855300 4855329 chr2L 4855379 4855409 8 83 4.0 2.5 3.2 1.9 109 chr2L 4855300 intron pog + chr2L 4855354 intron pog + chr2L 4855409 intron pog + chr2L_8_4855001 chr2L_4855001 RAL-161 71 chr2L 4858454 4858479 chr2L 4858552 4858578 4 99 0.5 1.0 0.8 2.2 124 chr2L 4858454 intron pog + chr2L 4858516 intron pog + chr2L 4858578 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-161 72 chr2L 4998112 4998147 chr2L 4998225 4998260 14 113 1.5 4.0 2.8 3.7 148 chr2L 4998112 intron Rtnl1 - chr2L 4998186 intron Rtnl1 - chr2L 4998260 intron Rtnl1 - chr2L_14_4995001 chr2L_4995001 RAL-161 73 chr2L 5021718 5021732 chr2L 5021794 5021808 5 75 5.0 2.0 3.5 1.1 90 chr2L 5021718 intron vkg - chr2L 5021763 intron vkg - chr2L 5021808 intron vkg - chr2L_5_5020001 chr2L_5020001 RAL-161 74 chr2L 5515213 5515234 chr2L 5515316 5515337 7 102 3.0 1.5 2.2 2.2 124 chr2L 5515213 intergenic not near genes chr2L 5515275 intergenic not near genes chr2L 5515337 intergenic not near genes chr2L_7_5515001 chr2L_5515001 RAL-161 75 chr2L 5587598 5587627 chr2L 5587669 5587680 13 65 5.5 5.0 5.2 2.1 82 chr2L 5587598 exon CG7251 - chr2L 5587639 exon CG7251 - chr2L 5587680 exon CG7251 - chr2L_13_5585001 chr2L_5585001 RAL-161 76 chr2L 5815066 5815091 chr2L 5815141 5815168 15 75 7.0 2.0 4.5 2.7 102 chr2L 5815066 intergenic not near genes chr2L 5815117 intergenic not near genes chr2L 5815168 intergenic not near genes chr2L_15_5815001 chr2L_5815001 RAL-161 77 chr2L 5812938 5812962 chr2L 5816094 5816103 8 3146 22.5 20.0 21.2 0.4 3165 chr2L 5812938 intergenic not near genes chr2L 5814520 intergenic not near genes chr2L 5816103 intergenic not near genes chr2L_8_5810001 chr2L_5810001 RAL-161 78 chr2L 5827713 5827740 chr2L 5836721 5836747 roo 6 9007 1.0 2.5 1.8 2.1 9034 chr2L 5827713 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836747 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-161 79 chr2L 5976943 5976967 chr2L 5977029 5977053 4 86 0.0 1.0 0.5 2.7 110 chr2L 5976943 intron chic - chr2L 5976998 intron chic - chr2L 5977053 intron chic - chr2L_4_5975001 chr2L_5975001 RAL-161 80 chr2L 6021621 6021639 chr2L 6021699 6021717 8 78 8.0 0.0 4.0 1.6 96 chr2L 6021621 exon CG13996 + chr2L 6021669 exon CG13996 + chr2L 6021717 3` UTR CG13996 + chr2L_8_6020001 chr2L_6020001 RAL-161 81 chr2L 6266321 6266348 chr2L 6266403 6266415 7 80 4.0 5.5 4.8 1.2 94 chr2L 6266321 intron Ddr + chr2L 6266368 intron Ddr + chr2L 6266415 intron Ddr + chr2L_7_6265001 chr2L_6265001 RAL-161 82 chr2L 6283942 6283977 chr2L 6284053 6284065 8 108 3.5 0.0 1.8 2.9 123 chr2L 6283942 intron Ddr + chr2L 6284004 intron Ddr + chr2L 6284065 intron Ddr + chr2L_8_6280001 chr2L_6280001 RAL-161 83 chr2L 6363156 6363180 chr2L 6366076 6366082 Burdock 4 2916 1.0 2.5 1.8 1.4 2926 chr2L 6363156 intergenic not near genes chr2L 6364619 intergenic not near genes chr2L 6366082 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-161 84 chr2L 6426854 6426886 chr2L 6445114 6445146 roo 7 18259 2.0 3.5 2.8 1.8 18292 chr2L 6426854 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-161 85 chr2L 6740744 6740761 chr2L 6740831 6740848 4 87 0.0 3.5 1.8 1.4 104 chr2L 6740744 intergenic not near genes chr2L 6740796 intergenic not near genes chr2L 6740848 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-161 86 chr2L 6883746 6883771 chr2L 6883832 6883857 6 84 3.0 3.0 3.0 1.5 111 chr2L 6883746 intron Nlg2 + chr2L 6883802 intron Nlg2 + chr2L 6883857 intron Nlg2 + chr2L_6_6880001 chr2L_6880001 RAL-161 87 chr2L 7107572 7107607 chr2L 7107662 7107696 7 85 0.0 2.5 1.2 3.2 124 chr2L 7107572 intron Pvf3 - chr2L 7107634 intron Pvf3 - chr2L 7107696 intron Pvf3 - chr2L_7_7105001 chr2L_7105001 RAL-161 88 chr2L 7143161 7143183 chr2L 7143242 7143264 5 80 1.5 0.0 0.8 2.8 103 chr2L 7143161 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143212 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143264 intron,5` UTR Pvf3 -,CR44612 + chr2L_5_7140001 chr2L_7140001 RAL-161 89 chr2L 7152197 7152212 chr2L 7152279 7152294 5 82 3.0 4.5 3.8 1.0 97 chr2L 7152197 intron Pvf3 - chr2L 7152246 intron Pvf3 - chr2L 7152294 intron Pvf3 - chr2L_5_7150001 chr2L_7150001 RAL-161 90 chr2L 7343347 7343352 chr2L 7350440 7350467 roo 6 7112 3.5 3.0 3.2 1.4 7120 chr2L 7343347 intron Wnt6 + chr2L 7346907 intron Wnt6 + chr2L 7350467 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-161 91 chr2L 7399308 7399331 chr2L 7399681 7399683 8 368 0.0 3.0 1.5 3.2 375 chr2L 7399308 intergenic not near genes chr2L 7399496 intergenic not near genes chr2L 7399683 intergenic not near genes chr2L_8_7395001 chr2L_7395001 RAL-161 92 chr2L 7567495 7567512 chr2L 7567570 7567589 6 77 3.0 1.5 2.2 1.9 94 chr2L 7567495 intron RapGAP1 - chr2L 7567542 intron RapGAP1 - chr2L 7567589 intron RapGAP1 - chr2L_6_7565001 chr2L_7565001 RAL-161 93 chr2L 7922745 7922775 chr2L 7922826 7922856 7 81 0.5 3.0 1.8 2.5 111 chr2L 7922745 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922856 intron Snoo - chr2L_7_7920001 chr2L_7920001 RAL-161 94 chr2L 8013617 8013625 chr2L 8018822 8018830 copia 5 5205 2.0 0.0 1.0 2.5 5213 chr2L 8013617 intron Tg + chr2L 8016224 intron Tg + chr2L 8018830 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-161 95 chr2L 8044100 8044127 chr2L 8044179 8044206 8 79 0.5 1.5 1.0 4.0 106 chr2L 8044100 intron CG7466 + chr2L 8044153 intron CG7466 + chr2L 8044206 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-161 96 chr2L 8238415 8238431 chr2L 8238493 8238507 10 78 5.5 0.5 3.0 2.5 92 chr2L 8238415 intron Pvr - chr2L 8238461 intron Pvr - chr2L 8238507 intron Pvr - chr2L_10_8235001 chr2L_8235001 RAL-161 97 chr2L 8270002 8270029 chr2L 8270084 8270111 6 82 0.5 2.5 1.5 2.4 109 chr2L 8270002 intron Btk29A - chr2L 8270056 intron Btk29A - chr2L 8270111 intron Btk29A - chr2L_6_8270001 chr2L_8270001 RAL-161 98 chr2L 8554374 8554390 chr2L 8554470 8554486 4 96 0.5 2.0 1.2 1.8 112 chr2L 8554374 intron Sema-1a + chr2L 8554430 intron Sema-1a + chr2L 8554486 intron Sema-1a + chr2L_4_8550001 chr2L_8550001 RAL-161 99 chr2L 8723116 8723123 chr2L 8731493 8731500 Tirant 4 8377 3.0 4.5 3.8 0.8 8384 chr2L 8723116 intron raw - chr2L 8727308 intron raw - chr2L 8731500 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-161 100 chr2L 8940372 8940405 chr2L 8940765 8940798 8 393 1.5 4.0 2.8 2.1 426 chr2L 8940372 exon CG9510 - chr2L 8940585 exon CG9510 - chr2L 8940798 intron CG9510 - chr2L_8_8940001 chr2L_8940001 RAL-161 101 chr2L 9040031 9040051 chr2L 9040118 9040138 4 87 2.0 0.5 1.2 1.8 107 chr2L 9040031 intergenic not near genes chr2L 9040084 intergenic not near genes chr2L 9040138 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-161 102 chr2L 9040894 9040915 chr2L 9040969 9040991 7 76 1.0 2.0 1.5 2.8 97 chr2L 9040894 intergenic not near genes chr2L 9040942 intergenic not near genes chr2L 9040991 intergenic not near genes chr2L_7_9040001 chr2L_9040001 RAL-161 103 chr2L 9084337 9084340 chr2L 16217660 16217660 13 7133321 13.0 11.0 12.0 1.0 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-161 104 chr2L 9109696 9109725 chr2L 9109781 9109810 9 82 3.0 1.0 2.0 3.0 114 chr2L 9109696 intergenic not near genes chr2L 9109753 intergenic not near genes chr2L 9109810 intergenic not near genes chr2L_9_9105001 chr2L_9105001 RAL-161 105 chr2L 9156550 9156583 chr2L 9156628 9156661 5 77 1.0 2.0 1.5 2.0 111 chr2L 9156550 exon CG32982 + chr2L 9156606 intron CG32982 + chr2L 9156661 intron CG32982 + chr2L_5_9155001 chr2L_9155001 RAL-161 106 chr2L 9297385 9297400 chr2L 9297462 9297476 4 76 2.0 4.0 3.0 1.0 91 chr2L 9297385 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297476 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-161 107 chr2L 9303473 9303494 chr2L 9303550 9303562 7 75 0.0 5.0 2.5 2.0 89 chr2L 9303473 intergenic not near genes chr2L 9303518 intergenic not near genes chr2L 9303562 intergenic not near genes chr2L_7_9300001 chr2L_9300001 RAL-161 108 chr2L 9357259 9357274 chr2L 9357340 9357355 4 81 0.5 0.5 0.5 2.7 96 chr2L 9357259 intergenic not near genes chr2L 9357307 intergenic not near genes chr2L 9357355 intergenic not near genes chr2L_4_9355001 chr2L_9355001 RAL-161 109 chr2L 9526850 9526876 chr2L 9526941 9526968 4 92 1.0 2.5 1.8 1.4 118 chr2L 9526850 intron Oatp30B + chr2L 9526909 intron Oatp30B + chr2L 9526968 intron Oatp30B + chr2L_4_9525001 chr2L_9525001 RAL-161 110 chr2L 9610134 9610143 chr2L 9610197 9610222 5 76 5.0 5.5 5.2 0.8 88 chr2L 9610134 intron gcm2 + chr2L 9610178 intron gcm2 + chr2L 9610222 intron gcm2 + chr2L_5_9610001 chr2L_9610001 RAL-161 111 chr2L 9686344 9686372 chr2L 9686428 9686455 14 81 3.5 0.0 1.8 5.0 111 chr2L 9686344 intron Pka-C1 - chr2L 9686400 intron Pka-C1 - chr2L 9686455 intron Pka-C1 - chr2L_14_9685001 chr2L_9685001 RAL-161 112 chr2L 9817210 9817238 chr2L 9817301 9817329 4 90 2.0 4.0 3.0 1.0 119 chr2L 9817210 intron nAChRalpha6 - chr2L 9817270 intron nAChRalpha6 - chr2L 9817329 intron nAChRalpha6 - chr2L_4_9815001 chr2L_9815001 RAL-161 113 chr2L 9892512 9892532 chr2L 9892588 9892608 4 76 0.5 3.5 2.0 1.3 96 chr2L 9892512 intron mtDNA-helicase - chr2L 9892560 intron mtDNA-helicase - chr2L 9892608 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-161 114 chr2L 9973730 9973758 chr2L 9980849 9980877 HMS-Beagle 4 7119 6.0 7.5 6.8 0.5 7147 chr2L 9973730 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-161 115 chr2L 10023091 10023103 chr2L 10023176 10023188 4 85 2.5 4.0 3.2 1.0 97 chr2L 10023091 intergenic not near genes chr2L 10023140 intergenic not near genes chr2L 10023188 intergenic not near genes chr2L_4_10020001 chr2L_10020001 RAL-161 116 chr2L 10153202 10153236 chr2L 10153280 10153297 10 77 2.0 2.0 2.0 3.3 95 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153250 intron,intron CG44153 -,CG4839 + chr2L 10153297 intron,intron CG44153 -,CG4839 + chr2L_10_10150001 chr2L_10150001 RAL-161 117 chr2L 10574571 10574596 chr2L 10574668 10574693 4 97 2.0 3.0 2.5 1.1 122 chr2L 10574571 intron Trim9 + chr2L 10574632 intron Trim9 + chr2L 10574693 intron Trim9 + chr2L_4_10570001 chr2L_10570001 RAL-161 118 chr2L 10640644 10640665 chr2L 10640732 10640752 7 87 5.0 3.5 4.2 1.3 108 chr2L 10640644 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640752 exon CG31872 + chr2L_7_10640001 chr2L_10640001 RAL-161 119 chr2L 10647672 10647678 chr2L 10648114 10648117 4 440 14.0 22.0 18.0 0.2 445 chr2L 10647672 exon CG17097 + chr2L 10647894 exon CG17097 + chr2L 10648117 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-161 120 chr2L 10704918 10704928 chr2L 10705013 10705023 6 95 3.0 2.0 2.5 1.7 105 chr2L 10704918 intron,3` UTR Lip2 -,CG6415 + chr2L 10704970 intron Lip2 - chr2L 10705023 intron Lip2 - chr2L_6_10700001 chr2L_10700001 RAL-161 121 chr2L 10705451 10705478 chr2L 10705532 10705561 7 77 4.0 3.0 3.5 1.6 110 chr2L 10705451 exon Lip2 - chr2L 10705506 intron Lip2 - chr2L 10705561 intron Lip2 - chr2L_7_10705001 chr2L_10705001 RAL-161 122 chr2L 10862862 10862876 chr2L 10864460 10864483 Rt1c 7 1611 3.5 6.5 5.0 1.2 1621 chr2L 10862862 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864483 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-161 123 chr2L 10946964 10946975 chr2L 10956168 10956190 roo 4 9212 4.5 10.0 7.2 0.5 9226 chr2L 10946964 intron dpr2 - chr2L 10951577 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-161 124 chr2L 11028454 11028465 chr2L 11028546 11028549 4 96 2.0 1.0 1.5 1.6 95 chr2L 11028454 intron Samuel - chr2L 11028502 intron Samuel - chr2L 11028549 intron Samuel - chr2L_4_11025001 chr2L_11025001 RAL-161 125 chr2L 11248574 11248591 chr2L 11248655 11248657 4 75 7.5 1.5 4.5 0.7 83 chr2L 11248574 intron ab + chr2L 11248616 intron ab + chr2L 11248657 intron ab + chr2L_4_11245001 chr2L_11245001 RAL-161 126 chr2L 11404785 11404802 chr2L 11404861 11404876 4 75 0.0 1.0 0.5 2.7 91 chr2L 11404785 intergenic not near genes chr2L 11404830 intergenic not near genes chr2L 11404876 intergenic not near genes chr2L_4_11400001 chr2L_11400001 RAL-161 127 chr2L 11418659 11418687 chr2L 11418738 11418745 8 74 1.0 4.0 2.5 2.3 86 chr2L 11418659 intergenic not near genes chr2L 11418702 intergenic not near genes chr2L 11418745 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-161 128 chr2L 11563641 11563666 chr2L 11568845 11568870 copia 5 5204 2.0 1.0 1.5 2.0 5229 chr2L 11563641 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-161 129 chr2L 11614074 11614086 chr2L 11615545 11615568 hopper2 6 1486 3.0 1.5 2.2 1.9 1494 chr2L 11614074 intron kek2 + chr2L 11614821 intron kek2 + chr2L 11615568 intron kek2 + chr2L_6_11610001 chr2L_11610001 RAL-161 130 chr2L 11698573 11698590 chr2L 11698666 11698683 8 92 1.0 1.5 1.2 3.6 110 chr2L 11698573 intergenic not near genes chr2L 11698628 intergenic not near genes chr2L 11698683 intergenic not near genes chr2L_8_11695001 chr2L_11695001 RAL-161 131 chr2L 11713513 11713540 chr2L 11720974 11721008 blood 10 7467 1.5 1.0 1.2 4.5 7495 chr2L 11713513 intergenic not near genes chr2L 11717260 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-161 132 chr2L 12151893 12151925 chr2L 12151988 12152020 11 95 1.0 3.0 2.0 3.7 127 chr2L 12151893 intron CG31760 + chr2L 12151956 intron CG31760 + chr2L 12152020 intron CG31760 + chr2L_11_12150001 chr2L_12150001 RAL-161 133 chr2L 12153938 12153950 chr2L 12154014 12154027 5 76 7.0 3.5 5.2 0.8 89 chr2L 12153938 exon CG31760 + chr2L 12153982 intron CG31760 + chr2L 12154027 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-161 134 chr2L 12179769 12179777 chr2L 12179855 12179862 4 86 2.5 0.5 1.5 1.6 93 chr2L 12179769 intron aret + chr2L 12179816 intron aret + chr2L 12179862 intron aret + chr2L_4_12175001 chr2L_12175001 RAL-161 135 chr2L 12237007 12237024 chr2L 12237092 12237109 5 83 4.0 3.0 3.5 1.1 102 chr2L 12237007 intron aret + chr2L 12237058 intron aret + chr2L 12237109 intron aret + chr2L_5_12235001 chr2L_12235001 RAL-161 136 chr2L 12266525 12266558 chr2L 12266608 12266626 8 80 1.5 2.5 2.0 2.7 101 chr2L 12266525 intron aret + chr2L 12266576 intron aret + chr2L 12266626 intron aret + chr2L_8_12265001 chr2L_12265001 RAL-161 137 chr2L 12313614 12313634 chr2L 12313800 12313820 8 184 2.0 3.0 2.5 2.3 206 chr2L 12313614 intergenic not near genes chr2L 12313717 intergenic not near genes chr2L 12313820 intergenic not near genes chr2L_8_12310001 chr2L_12310001 RAL-161 138 chr2L 12357834 12357867 chr2L 12357941 12357974 7 107 3.0 0.0 1.5 2.8 140 chr2L 12357834 intron,exon bru-2 +,CG17010 + chr2L 12357904 intron,3` UTR bru-2 +,CG17010 + chr2L 12357974 intron bru-2 + chr2L_7_12355001 chr2L_12355001 RAL-161 139 chr2L 12601781 12601797 chr2L 12601859 12601881 6 79 6.0 2.5 4.2 1.2 100 chr2L 12601781 intron nub + chr2L 12601831 intron nub + chr2L 12601881 intron nub + chr2L_6_12600001 chr2L_12600001 RAL-161 140 chr2L 12693844 12693871 chr2L 12693921 12693948 9 76 1.5 0.5 1.0 4.5 104 chr2L 12693844 3` UTR CG6153 + chr2L 12693896 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693948 3` UTR CG5780 - chr2L_9_12690001 chr2L_12690001 RAL-161 141 chr2L 12728920 12728943 chr2L 12729162 12729185 pogo 5 242 0.5 4.0 2.2 1.6 265 chr2L 12728920 intron MRP + chr2L 12729052 intron MRP + chr2L 12729185 exon MRP + chr2L_5_12725001 chr2L_12725001 RAL-161 142 chr2L 12812541 12812552 chr2L 12813164 12813172 5 624 2.0 1.0 1.5 2.0 631 chr2L 12812541 intergenic not near genes chr2L 12812856 intergenic not near genes chr2L 12813172 intergenic not near genes chr2L_5_12810001 chr2L_12810001 RAL-161 143 chr2L 12868239 12868255 chr2L 12868325 12868341 8 85 4.5 4.0 4.2 1.5 102 chr2L 12868239 intergenic not near genes chr2L 12868290 intergenic not near genes chr2L 12868341 intergenic not near genes chr2L_8_12865001 chr2L_12865001 RAL-161 144 chr2L 12894032 12894050 chr2L 12895494 12895497 hobo 4 1458 9.0 6.5 7.8 0.5 1465 chr2L 12894032 intergenic not near genes chr2L 12894764 intergenic not near genes chr2L 12895497 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-161 145 chr2L 12933855 12933882 chr2L 12941319 12941349 blood 7 7466 2.0 2.0 2.0 2.3 7494 chr2L 12933855 intergenic not near genes chr2L 12937602 intergenic not near genes chr2L 12941349 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-161 146 chr2L 13405651 13405665 chr2L 13410448 13410462 Doc 7 4797 6.5 1.5 4.0 1.4 4811 chr2L 13405651 exon CG7110 + chr2L 13408056 intron CG7110 + chr2L 13410462 intron CG7110 + chr2L_7_13405001 chr2L_13405001 RAL-161 147 chr2L 13421917 13421946 chr2L 13421995 13422024 5 78 0.5 2.0 1.2 2.3 107 chr2L 13421917 intron CG42784 + chr2L 13421970 intron CG42784 + chr2L 13422024 intron CG42784 + chr2L_5_13420001 chr2L_13420001 RAL-161 148 chr2L 13481454 13481474 chr2L 13482060 13482081 jockey 8 607 3.0 9.0 6.0 1.1 627 chr2L 13481454 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-161 149 chr2L 13492442 13492461 chr2L 13492551 13492575 13 116 2.0 5.0 3.5 2.9 133 chr2L 13492442 intron CG42784 + chr2L 13492508 intron CG42784 + chr2L 13492575 intron CG42784 + chr2L_13_13490001 chr2L_13490001 RAL-161 150 chr2L 13622135 13622170 chr2L 13622234 13622269 9 96 1.0 1.0 1.0 4.5 134 chr2L 13622135 intron kuz + chr2L 13622202 intron kuz + chr2L 13622269 intron kuz + chr2L_9_13620001 chr2L_13620001 RAL-161 151 chr2L 13684283 13684290 chr2L 13684359 13684366 4 74 0.0 5.5 2.8 1.1 83 chr2L 13684283 intron CG31814 - chr2L 13684324 intron CG31814 - chr2L 13684366 intron CG31814 - chr2L_4_13680001 chr2L_13680001 RAL-161 152 chr2L 13693005 13693037 chr2L 13693081 13693113 7 75 1.0 2.5 1.8 2.5 108 chr2L 13693005 intron CG31814 - chr2L 13693059 intron CG31814 - chr2L 13693113 intron CG31814 - chr2L_7_13690001 chr2L_13690001 RAL-161 153 chr2L 13694702 13694708 chr2L 13694784 13694790 4 82 0.0 4.0 2.0 1.3 88 chr2L 13694702 intron CG31814 - chr2L 13694746 intron CG31814 - chr2L 13694790 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-161 154 chr2L 13699559 13699579 chr2L 13699634 13699656 11 77 4.0 6.0 5.0 1.8 97 chr2L 13699559 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699656 intron CG31814 - chr2L_11_13695001 chr2L_13695001 RAL-161 155 chr2L 13703489 13703503 chr2L 13703572 13703574 7 82 5.5 2.5 4.0 1.4 85 chr2L 13703489 intron CG31814 - chr2L 13703532 intron CG31814 - chr2L 13703574 intron CG31814 - chr2L_7_13700001 chr2L_13700001 RAL-161 156 chr2L 13761807 13761830 chr2L 13762918 13762941 Doc 5 1107 3.5 0.5 2.0 1.7 1134 chr2L 13761807 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762941 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-161 157 chr2L 13800174 13800205 chr2L 13800278 13800309 4 104 0.5 2.0 1.2 1.8 135 chr2L 13800174 intergenic Sec71 + chr2L 13800242 intergenic not near genes chr2L 13800309 intergenic not near genes chr2L_4_13800001 chr2L_13800001 RAL-161 158 chr2L 13842859 13842869 chr2L 13843266 13843271 6 407 4.5 0.5 2.5 1.7 412 chr2L 13842859 intron CenG1A + chr2L 13843065 intron,exon CenG1A +,CG33306 - chr2L 13843271 intron,exon CenG1A +,CG33306 - chr2L_6_13840001 chr2L_13840001 RAL-161 159 chr2L 13853095 13853111 chr2L 13862244 13862260 roo 6 9148 3.5 0.0 1.8 2.1 9165 chr2L 13853095 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862260 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-161 160 chr2L 14001655 14001675 chr2L 14002000 14002020 8 345 2.5 3.0 2.8 2.1 365 chr2L 14001655 intergenic rk - chr2L 14001838 intergenic not near genes chr2L 14002020 intergenic not near genes chr2L_8_14000001 chr2L_14000001 RAL-161 161 chr2L 14246293 14246309 chr2L 14246370 14246387 4 78 0.0 2.0 1.0 2.0 94 chr2L 14246293 intergenic not near genes chr2L 14246340 intergenic not near genes chr2L 14246387 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-161 162 chr2L 14403127 14403148 chr2L 14403219 14403240 5 91 2.0 1.0 1.5 2.0 113 chr2L 14403127 intron elB - chr2L 14403184 intron elB - chr2L 14403240 intron elB - chr2L_5_14400001 chr2L_14400001 RAL-161 163 chr2L 14406955 14406972 chr2L 14407031 14407047 7 76 0.0 2.5 1.2 3.2 92 chr2L 14406955 intron elB - chr2L 14407001 intron elB - chr2L 14407047 intron elB - chr2L_7_14405001 chr2L_14405001 RAL-161 164 chr2L 14423949 14423975 chr2L 14424918 14424944 8 969 8.0 40.0 24.0 0.3 995 chr2L 14423949 intergenic Cpr35B - chr2L 14424446 exon Cpr35B - chr2L 14424944 exon Cpr35B - chr2L_8_14420001 chr2L_14420001 RAL-161 165 chr2L 14427808 14427827 chr2L 14428010 14428033 9 205 6.0 3.5 4.8 1.6 225 chr2L 14427808 intergenic not near genes chr2L 14427920 intergenic not near genes chr2L 14428033 intergenic not near genes chr2L_9_14425001 chr2L_14425001 RAL-161 166 chr2L 14774234 14774254 chr2L 14774451 14774457 4 214 2.5 2.0 2.2 1.2 223 chr2L 14774234 3` UTR CG4650 - chr2L 14774346 3` UTR CG4650 - chr2L 14774457 intron CG4650 - chr2L_4_14770001 chr2L_14770001 RAL-161 167 chr2L 14803880 14803908 chr2L 14809083 14809111 copia 12 5202 2.5 2.0 2.2 3.8 5231 chr2L 14803880 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809111 intergenic not near genes chr2L_12_14805001 chr2L_14805001 RAL-161 168 chr2L 14854957 14854988 chr2L 14855035 14855060 7 77 3.0 1.5 2.2 2.2 103 chr2L 14854957 intergenic not near genes chr2L 14855008 intergenic not near genes chr2L 14855060 intergenic not near genes chr2L_7_14855001 chr2L_14855001 RAL-161 169 chr2L 14889957 14889988 chr2L 14890382 14890413 jockey 5 425 1.5 2.5 2.0 1.7 456 chr2L 14889957 intergenic not near genes chr2L 14890185 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-161 170 chr2L 15135269 15135288 chr2L 15135354 15135378 5 85 3.5 4.0 3.8 1.0 109 chr2L 15135269 intergenic not near genes chr2L 15135324 intergenic not near genes chr2L 15135378 intergenic not near genes chr2L_5_15135001 chr2L_15135001 RAL-161 171 chr2L 15192223 15192248 chr2L 15192347 15192372 12 123 1.5 1.0 1.2 5.5 149 chr2L 15192223 intron CG4168 - chr2L 15192298 intron CG4168 - chr2L 15192372 intron CG4168 - chr2L_12_15190001 chr2L_15190001 RAL-161 172 chr2L 15225303 15225334 chr2L 15226152 15226167 5 844 0.5 5.0 2.8 1.3 864 chr2L 15225303 intergenic not near genes chr2L 15225735 intergenic not near genes chr2L 15226167 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-161 173 chr2L 15324586 15324623 chr2L 15324664 15324701 11 75 5.0 3.0 4.0 2.2 115 chr2L 15324586 intergenic not near genes chr2L 15324644 intergenic not near genes chr2L 15324701 intergenic not near genes chr2L_11_15320001 chr2L_15320001 RAL-161 174 chr2L 15442271 15442302 chr2L 15442355 15442388 6 86 1.0 0.0 0.5 4.0 117 chr2L 15442271 5` UTR CR44862 + chr2L 15442330 intergenic CR44862 + chr2L 15442388 intergenic CR44862 + chr2L_6_15440001 chr2L_15440001 RAL-161 175 chr2L 15445661 15445670 chr2L 15445735 15445748 4 76 1.5 5.5 3.5 0.9 87 chr2L 15445661 intergenic not near genes chr2L 15445704 intergenic not near genes chr2L 15445748 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-161 176 chr2L 15610673 15610695 chr2L 15613565 15613587 4 2892 10.0 1.0 5.5 0.6 2914 chr2L 15610673 3` UTR,5` UTR CG15255 -,CR44865 + chr2L 15612130 intergenic CG11864 -,CG15255 - chr2L 15613587 intergenic CG11864 -,CG15254 - chr2L_4_15610001 chr2L_15610001 RAL-161 177 chr2L 15906194 15906209 chr2L 15906283 15906297 6 86 1.0 0.5 0.8 3.3 103 chr2L 15906194 intron beat-Ib - chr2L 15906246 intron beat-Ib - chr2L 15906297 intron beat-Ib - chr2L_6_15905001 chr2L_15905001 RAL-161 178 chr2L 15907339 15907369 chr2L 15907694 15907723 8 353 1.5 1.0 1.2 3.6 384 chr2L 15907339 intron beat-Ib - chr2L 15907531 intron beat-Ib - chr2L 15907723 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-161 179 chr2L 15930906 15930933 chr2L 15930998 15931024 7 91 3.0 0.5 1.8 2.5 118 chr2L 15930906 intron beat-Ib - chr2L 15930965 intron beat-Ib - chr2L 15931024 intron beat-Ib - chr2L_7_15930001 chr2L_15930001 RAL-161 180 chr2L 10176023 10176023 chr2L 16071771 16071771 4 5895748 16.5 16.0 16.2 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-161 181 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 30 145889 15.0 11.0 13.0 2.1 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_30_16140001 chr2L_16140001 RAL-161 182 chr2L 16139344 16139372 chr2L 16139882 16139910 5 537 0.5 1.0 0.8 2.8 566 chr2L 16139344 intergenic not near genes chr2L 16139627 intergenic not near genes chr2L 16139910 intergenic not near genes chr2L_5_16135001 chr2L_16135001 RAL-161 183 chr2L 9084339 9084340 chr2L 16217660 16217660 8 7133320 13.0 11.0 12.0 0.6 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-161 184 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 23 145889 15.0 11.0 13.0 1.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_23_16140001 chr2L_16140001 RAL-161 185 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 9.5 28.0 18.8 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-161 186 chr2L 16254896 16254914 chr2L 16255155 16255173 4 259 1.0 1.0 1.0 2.0 277 chr2L 16254896 intron PRL-1 - chr2L 16255034 intron PRL-1 - chr2L 16255173 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-161 187 chr2L 16280260 16280280 chr2L 16281428 16281451 1360 4 1170 4.5 1.5 3.0 1.0 1191 chr2L 16280260 intron crp - chr2L 16280856 intron crp - chr2L 16281451 intron crp - chr2L_4_16280001 chr2L_16280001 RAL-161 188 chr2L 16480126 16480143 chr2L 16480508 16480526 7 383 1.5 6.0 3.8 1.5 400 chr2L 16480126 intron dac - chr2L 16480326 intron dac - chr2L 16480526 intron dac - chr2L_7_16480001 chr2L_16480001 RAL-161 189 chr2L 16739158 16739180 chr2L 16742311 16742331 6 3152 19.0 6.5 12.8 0.4 3173 chr2L 16739158 exon ChLD3 + chr2L 16740744 exon ChLD3 + chr2L 16742331 3` UTR,3` UTR ChLD3 +,LSm7 - chr2L_6_16740001 chr2L_16740001 RAL-161 190 chr2L 16736484 16736503 chr2L 16743697 16743708 6 7208 28.0 22.5 25.2 0.2 7224 chr2L 16736484 exon glu - chr2L 16740096 intron ChLD3 + chr2L 16743708 intron CG17912 + chr2L_6_16740001 chr2L_16740001 RAL-161 191 chr2L 17000130 17000154 chr2L 17000240 17000253 5 115 0.0 1.5 0.8 2.8 123 chr2L 17000130 intergenic not near genes chr2L 17000192 intergenic not near genes chr2L 17000253 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-161 192 chr2L 17088857 17088875 chr2L 17088935 17088959 8 83 1.0 4.0 2.5 2.3 102 chr2L 17088857 3` UTR CG12620 + chr2L 17088908 3` UTR CG12620 + chr2L 17088959 3` UTR CG12620 + chr2L_8_17085001 chr2L_17085001 RAL-161 193 chr2L 17273191 17273227 chr2L 17277974 17278010 F-element 6 4780 2.0 4.0 3.0 1.5 4819 chr2L 17273191 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278010 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-161 194 chr2L 17605852 17605867 chr2L 17605930 17605944 5 78 1.5 1.5 1.5 2.0 92 chr2L 17605852 intergenic not near genes chr2L 17605898 intergenic not near genes chr2L 17605944 intergenic not near genes chr2L_5_17605001 chr2L_17605001 RAL-161 195 chr2L 17684162 17684185 chr2L 17684373 17684397 6 212 0.5 2.0 1.2 2.7 235 chr2L 17684162 intron CadN - chr2L 17684280 intron CadN - chr2L 17684397 intron CadN - chr2L_6_17680001 chr2L_17680001 RAL-161 196 chr2L 17819930 17819942 chr2L 17825133 17825146 copia 4 5204 1.5 3.0 2.2 1.2 5216 chr2L 17819930 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825146 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-161 197 chr2L 17880001 17880030 chr2L 17880088 17880117 7 87 1.5 3.0 2.2 2.2 116 chr2L 17880001 intergenic not near genes chr2L 17880059 intergenic not near genes chr2L 17880117 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-161 198 chr2L 17957397 17957424 chr2L 17966432 17966459 9 9035 30.0 16.0 23.0 0.4 9062 chr2L 17957397 intergenic not near genes chr2L 17961928 intergenic not near genes chr2L 17966459 exon,intron btv -,CG5674 + chr2L_9_17960001 chr2L_17960001 RAL-161 199 chr2L 18051876 18051907 chr2L 18061023 18061053 roo 5 9147 2.0 3.5 2.8 1.3 9177 chr2L 18051876 intron rdo + chr2L 18056464 intron rdo + chr2L 18061053 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-161 200 chr2L 18408032 18408048 chr2L 18412816 18412832 Doc 4 4784 2.5 0.0 1.2 1.8 4800 chr2L 18408032 intergenic not near genes chr2L 18410432 intergenic not near genes chr2L 18412832 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-161 201 chr2L 18576683 18576704 chr2L 18576791 18576811 5 108 1.0 1.0 1.0 2.5 128 chr2L 18576683 intron Pde11 - chr2L 18576747 intron Pde11 - chr2L 18576811 intron Pde11 - chr2L_5_18575001 chr2L_18575001 RAL-161 202 chr2L 18625809 18625829 chr2L 18626215 18626235 8 405 4.5 3.5 4.0 1.6 426 chr2L 18625809 intron MESR3 + chr2L 18626022 intron MESR3 + chr2L 18626235 intron MESR3 + chr2L_8_18625001 chr2L_18625001 RAL-161 203 chr2L 18652479 18652506 chr2L 18652554 18652577 9 72 3.0 6.5 4.8 1.6 98 chr2L 18652479 intron,exon MESR3 +,Cyp310a1 - chr2L 18652528 intron,exon MESR3 +,Cyp310a1 - chr2L 18652577 intron,exon MESR3 +,Cyp310a1 - chr2L_9_18650001 chr2L_18650001 RAL-161 204 chr2L 18812557 18812589 chr2L 18812820 18812852 10 263 0.0 2.0 1.0 5.0 295 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-161 205 chr2L 18883854 18883883 chr2L 18883936 18883964 5 82 0.0 1.5 0.8 2.8 110 chr2L 18883854 intergenic not near genes chr2L 18883909 intergenic not near genes chr2L 18883964 intergenic not near genes chr2L_5_18880001 chr2L_18880001 RAL-161 206 chr2L 18886900 18886916 chr2L 18886991 18887007 6 91 2.0 2.0 2.0 2.0 107 chr2L 18886900 intergenic not near genes chr2L 18886954 intergenic not near genes chr2L 18887007 intergenic not near genes chr2L_6_18885001 chr2L_18885001 RAL-161 207 chr2L 18904337 18904362 chr2L 18904428 18904451 6 88 3.5 4.0 3.8 1.2 114 chr2L 18904337 intergenic not near genes chr2L 18904394 intergenic not near genes chr2L 18904451 intergenic not near genes chr2L_6_18900001 chr2L_18900001 RAL-161 208 chr2L 18990312 18990338 chr2L 18990423 18990446 4 110 1.5 1.0 1.2 1.8 134 chr2L 18990312 intergenic CG15170 - chr2L 18990379 intergenic CG15170 - chr2L 18990446 intergenic CG15170 - chr2L_4_18990001 chr2L_18990001 RAL-161 209 chr2L 19189974 19190002 chr2L 19190127 19190154 7 153 2.0 2.5 2.2 2.2 180 chr2L 19189974 intergenic pigeon +,drl + chr2L 19190064 intergenic pigeon +,drl + chr2L 19190154 intergenic drl +,pigeon + chr2L_7_19190001 chr2L_19190001 RAL-161 210 chr2L 19331125 19331155 chr2L 19331227 19331257 8 102 3.0 4.5 3.8 1.7 132 chr2L 19331125 intergenic not near genes chr2L 19331191 intergenic not near genes chr2L 19331257 intergenic not near genes chr2L_8_19330001 chr2L_19330001 RAL-161 211 chr2L 19331664 19331683 chr2L 19331742 19331752 4 76 4.0 2.5 3.2 1.0 88 chr2L 19331664 intergenic not near genes chr2L 19331708 intergenic not near genes chr2L 19331752 intergenic not near genes chr2L_4_19330001 chr2L_19330001 RAL-161 212 chr2L 19331684 19331699 chr2L 19331741 19331756 6 59 2.0 2.5 2.2 1.9 72 chr2L 19331684 intergenic not near genes chr2L 19331720 intergenic not near genes chr2L 19331756 intergenic not near genes chr2L_6_19330001 chr2L_19330001 RAL-161 213 chr2L 19345020 19345030 chr2L 19357228 19357239 blood 5 12209 1.5 2.5 2.0 1.7 12219 chr2L 19345020 intron dnt - chr2L 19351130 intron dnt - chr2L 19357239 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-161 214 chr2L 19357545 19357565 chr2L 19357635 19357654 10 90 2.0 2.0 2.0 3.3 109 chr2L 19357545 intron dnt - chr2L 19357600 intron dnt - chr2L 19357654 intron dnt - chr2L_10_19355001 chr2L_19355001 RAL-161 215 chr2L 19380511 19380527 chr2L 19380591 19380606 5 80 2.5 1.0 1.8 1.8 95 chr2L 19380511 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380606 intergenic CG17350 + chr2L_5_19380001 chr2L_19380001 RAL-161 216 chr2L 19544601 19544624 chr2L 19544667 19544701 11 67 3.0 8.0 5.5 1.7 100 chr2L 19544601 exon ref(2)P + chr2L 19544651 exon ref(2)P + chr2L 19544701 exon ref(2)P + chr2L_11_19540001 chr2L_19540001 RAL-161 217 chr2L 19560853 19560864 chr2L 19560933 19560942 4 80 1.0 0.0 0.5 2.7 89 chr2L 19560853 intron Tep5 + chr2L 19560898 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-161 218 chr2L 19561344 19561366 chr2L 19561485 19561507 7 141 0.0 5.5 2.8 1.8 163 chr2L 19561344 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561507 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-161 219 chr2L 19562060 19562082 chr2L 19562145 19562167 6 84 1.0 4.0 2.5 1.7 107 chr2L 19562060 intron Tep5 + chr2L 19562114 intron Tep5 + chr2L 19562167 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-161 220 chr2L 19620096 19620127 chr2L 19621082 19621112 jockey 8 984 5.5 6.5 6.0 1.1 1016 chr2L 19620096 intron Lar + chr2L 19620604 intron Lar + chr2L 19621112 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-161 221 chr2L 19703535 19703563 chr2L 19712671 19712699 roo 4 9136 6.0 2.0 4.0 0.8 9164 chr2L 19703535 intron Lar + chr2L 19708117 intron Lar + chr2L 19712699 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-161 222 chr2L 19737357 19737388 chr2L 19740823 19740856 1360 4 3467 3.0 5.0 4.0 0.8 3499 chr2L 19737357 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-161 223 chr2L 19762816 19762822 chr2L 19763058 19763063 pogo 4 241 4.5 1.5 3.0 1.0 247 chr2L 19762816 intron fbp - chr2L 19762940 intron fbp - chr2L 19763063 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-161 224 chr2L 19847643 19847667 chr2L 19847735 19847753 4 88 0.5 1.0 0.8 2.2 110 chr2L 19847643 intron sick + chr2L 19847698 intron sick + chr2L 19847753 intron sick + chr2L_4_19845001 chr2L_19845001 RAL-161 225 chr2L 19939996 19940007 chr2L 19940127 19940142 5 134 3.0 7.0 5.0 0.8 146 chr2L 19939996 intron sick + chr2L 19940069 intron sick + chr2L 19940142 intron sick + chr2L_5_19940001 chr2L_19940001 RAL-161 226 chr2L 20136735 20136765 chr2L 20137050 20137080 12 314 2.5 2.0 2.2 3.8 345 chr2L 20136735 intergenic not near genes chr2L 20136908 intergenic not near genes chr2L 20137080 intergenic not near genes chr2L_12_20135001 chr2L_20135001 RAL-161 227 chr2L 20236512 20236532 chr2L 20236587 20236608 5 74 0.5 0.0 0.2 4.2 96 chr2L 20236512 intergenic not near genes chr2L 20236560 intergenic not near genes chr2L 20236608 intergenic not near genes chr2L_5_20235001 chr2L_20235001 RAL-161 228 chr2L 20296512 20296540 chr2L 20296593 20296620 5 80 0.0 1.5 0.8 2.8 108 chr2L 20296512 intergenic CR43414 - chr2L 20296566 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_5_20295001 chr2L_20295001 RAL-161 229 chr2L 20300006 20300020 chr2L 20300093 20300105 4 87 6.0 4.5 5.2 0.6 99 chr2L 20300006 intergenic not near genes chr2L 20300056 intergenic not near genes chr2L 20300105 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-161 230 chr2L 20437557 20437589 chr2L 20437643 20437675 14 85 2.5 2.5 2.5 4.0 118 chr2L 20437557 intron,3` UTR CG31688 +,CR43607 - chr2L 20437616 intron,3` UTR CG31688 +,CR43607 - chr2L 20437675 intron,intron CG31688 +,CR43607 - chr2L_14_20435001 chr2L_20435001 RAL-161 231 chr2L 20516628 20516634 chr2L 20520279 20520289 4 3652 29.5 18.0 23.8 0.2 3661 chr2L 20516628 intergenic not near genes chr2L 20518458 intergenic not near genes chr2L 20520289 intergenic not near genes chr2L_4_20515001 chr2L_20515001 RAL-161 232 chr2L 20568662 20568680 chr2L 20569052 20569070 X-element 5 390 1.0 2.0 1.5 2.0 408 chr2L 20568662 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-161 233 chr2L 20576229 20576241 chr2L 20583693 20583709 blood 6 7466 5.0 2.0 3.5 1.3 7480 chr2L 20576229 intergenic not near genes chr2L 20579969 intergenic not near genes chr2L 20583709 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-161 234 chr2L 20601785 20601813 chr2L 20601863 20601891 10 78 2.5 0.0 1.2 4.5 106 chr2L 20601785 intron CR44909 - chr2L 20601838 intron CR44909 - chr2L 20601891 intron CR44909 - chr2L_10_20600001 chr2L_20600001 RAL-161 235 chr2L 20901453 20901490 chr2L 20902617 20902632 1360 6 1159 2.0 3.5 2.8 1.6 1179 chr2L 20901453 intron,intron CG43739 -,sky - chr2L 20902042 intron,intron CG43739 -,sky - chr2L 20902632 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-161 236 chr2L 20967937 20967960 chr2L 20968030 20968053 5 93 3.0 3.0 3.0 1.2 116 chr2L 20967937 intron CG42238 - chr2L 20967995 intron CG42238 - chr2L 20968053 intron CG42238 - chr2L_5_20965001 chr2L_20965001 RAL-161 237 chr2L 21020273 21020309 chr2L 21023949 21023986 NOF 12 3675 2.5 0.5 1.5 4.8 3713 chr2L 21020273 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_12_21020001 chr2L_21020001 RAL-161 238 chr2L 21041139 21041167 chr2L 21049398 21049426 Tirant 8 8260 1.0 1.5 1.2 3.6 8287 chr2L 21041139 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-161 239 chr2L 21284054 21284084 chr2L 21284527 21284543 7 471 2.5 1.0 1.8 2.5 489 chr2L 21284054 intergenic not near genes chr2L 21284298 intergenic not near genes chr2L 21284543 intergenic not near genes chr2L_7_21280001 chr2L_21280001 RAL-161 240 chr2L 21766648 21766673 chr2L 21766733 21766760 7 87 0.5 1.5 1.0 3.5 112 chr2L 21766648 intron CG31612 - chr2L 21766704 intron CG31612 - chr2L 21766760 intron CG31612 - chr2L_7_21765001 chr2L_21765001 RAL-161 241 chr2L 21809370 21809398 chr2L 21809483 21809512 4 113 1.5 1.5 1.5 1.6 142 chr2L 21809370 intergenic not near genes chr2L 21809441 intergenic not near genes chr2L 21809512 intergenic not near genes chr2L_4_21805001 chr2L_21805001 RAL-161 242 chr2L 21859317 21859346 chr2L 21859397 21859426 7 77 3.0 5.0 4.0 1.4 109 chr2L 21859317 intron CR44917 + chr2L 21859372 intron CR44917 + chr2L 21859426 intron CR44917 + chr2L_7_21855001 chr2L_21855001 RAL-161 243 chr2L 21926075 21926105 chr2L 21926168 21926188 4 90 2.5 2.0 2.2 1.2 113 chr2L 21926075 intergenic not near genes chr2L 21926132 intergenic not near genes chr2L 21926188 intergenic not near genes chr2L_4_21925001 chr2L_21925001 RAL-161 244 chr2L 21981688 21981703 chr2L 21990852 21990868 roo 5 9165 3.0 2.5 2.8 1.3 9180 chr2L 21981688 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990868 exon CG2528 - chr2L_5_21985001 chr2L_21985001 RAL-161 245 chr2L 22239425 22239452 chr2L 22239506 22239533 5 81 5.5 1.5 3.5 1.1 108 chr2L 22239425 intron CR43765 - chr2L 22239479 3` UTR CR43765 - chr2L 22239533 3` UTR CR43765 - chr2L_5_22235001 chr2L_22235001 RAL-161 246 chr2L 22548926 22548936 chr2L 22550151 22550160 1360 4 1225 0.0 2.5 1.2 1.8 1234 chr2L 22548926 intergenic CG17490 + chr2L 22549543 intergenic not near genes chr2L 22550160 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-161 247 chr2L 22679801 22679825 chr2L 22684573 22684597 F-element 4 4772 0.5 3.0 1.8 1.4 4796 chr2L 22679801 intron CG40006 - chr2L 22682199 intron CG40006 - chr2L 22684597 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-161 248 chr2R 503136 503153 chr2R 504022 504039 297 5 886 17.5 3.5 10.5 0.4 903 chr2R 503136 intron CG40378 + chr2R 503588 intron CG40378 + chr2R 504039 intron CG40378 + chr2R_5_500001 chr2R_500001 RAL-161 249 chr2R 529322 529357 chr2R 537947 537981 Max-element 8 8623 0.0 2.0 1.0 4.0 8659 chr2R 529322 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-161 250 chr2R 552772 552786 chr2R 553970 554003 1360 5 1212 3.5 1.5 2.5 1.4 1231 chr2R 552772 intron CG40378 + chr2R 553388 intron CG40378 + chr2R 554003 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-161 251 chr2R 1082368 1082384 chr2R 1087128 1087159 Doc 6 4770 1.5 1.0 1.2 2.7 4791 chr2R 1082368 intron rl + chr2R 1084764 intron rl + chr2R 1087159 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-161 252 chr2R 2508320 2508340 chr2R 2508458 2508478 6 138 0.0 2.5 1.2 2.7 158 chr2R 2508320 intron MFS17 - chr2R 2508399 intron MFS17 - chr2R 2508478 intron MFS17 - chr2R_6_2505001 chr2R_2505001 RAL-161 253 chr2R 3144092 3144110 chr2R 3393370 3393388 Doc 5 249277 8.0 1.0 4.5 0.9 249296 chr2R 3144092 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393388 intergenic not near genes chr2R_5_3265001 chr2R_3265001 RAL-161 254 chr2R 3338954 3338980 chr2R 3339056 3339078 5 97 14.0 20.0 17.0 0.3 124 chr2R 3338954 intergenic not near genes chr2R 3339016 intergenic not near genes chr2R 3339078 intergenic not near genes chr2R_5_3335001 chr2R_3335001 RAL-161 255 chr2R 4312951 4312987 chr2R 4313035 4313071 10 84 1.5 1.0 1.2 4.5 120 chr2R 4312951 intergenic not near genes chr2R 4313011 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_10_4310001 chr2R_4310001 RAL-161 256 chr2R 4602857 4602869 chr2R 4603197 4603224 4 350 4.0 2.0 3.0 1.0 367 chr2R 4602857 intron p120ctn + chr2R 4603040 intron p120ctn + chr2R 4603224 intron p120ctn + chr2R_4_4600001 chr2R_4600001 RAL-161 257 chr2R 4622955 4622987 chr2R 4624114 4624146 1360 7 1158 3.5 2.5 3.0 1.8 1191 chr2R 4622955 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-161 258 chr2R 4688113 4688123 chr2R 4688206 4688216 4 92 0.0 0.0 0.0 4.0 103 chr2R 4688113 intergenic not near genes chr2R 4688164 intergenic not near genes chr2R 4688216 intergenic not near genes chr2R_4_4685001 chr2R_4685001 RAL-161 259 chr2R 5008995 5009025 chr2R 5009303 5009334 5 303 5.0 2.5 3.8 1.0 339 chr2R 5008995 intron Ir41a + chr2R 5009164 intron Ir41a + chr2R 5009334 intron Ir41a + chr2R_5_5005001 chr2R_5005001 RAL-161 260 chr2R 5075223 5075241 chr2R 5075351 5075369 4 127 3.0 0.0 1.5 1.6 146 chr2R 5075223 intergenic not near genes chr2R 5075296 intergenic not near genes chr2R 5075369 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-161 261 chr2R 5075349 5075372 chr2R 5075765 5075788 7 416 0.0 2.0 1.0 3.5 439 chr2R 5075349 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075788 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-161 262 chr2R 5460536 5460553 chr2R 5460626 5460657 9 97 5.5 4.0 4.8 1.6 121 chr2R 5460536 intergenic not near genes chr2R 5460596 intergenic not near genes chr2R 5460657 intergenic not near genes chr2R_9_5460001 chr2R_5460001 RAL-161 263 chr2R 5839420 5839453 chr2R 5839593 5839626 6 173 4.5 6.0 5.2 1.0 206 chr2R 5839420 intron dpr12 + chr2R 5839523 intron dpr12 + chr2R 5839626 intron dpr12 + chr2R_6_5835001 chr2R_5835001 RAL-161 264 chr2R 5861287 5861321 chr2R 5861408 5861442 12 116 1.0 3.0 2.0 4.0 155 chr2R 5861287 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861442 intergenic not near genes chr2R_12_5860001 chr2R_5860001 RAL-161 265 chr2R 5869293 5869306 chr2R 5874369 5874370 flea 5 5073 1.0 2.0 1.5 2.0 5077 chr2R 5869293 intergenic not near genes chr2R 5871832 intergenic not near genes chr2R 5874370 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-161 266 chr2R 5917783 5917796 chr2R 5917862 5917874 4 79 2.5 5.0 3.8 0.8 91 chr2R 5917783 intron CG43366 + chr2R 5917828 intron CG43366 + chr2R 5917874 intron CG43366 + chr2R_4_5915001 chr2R_5915001 RAL-161 267 chr2R 5945618 5945640 chr2R 5945700 5945719 5 81 3.0 3.0 3.0 1.2 101 chr2R 5945618 intergenic not near genes chr2R 5945668 intergenic not near genes chr2R 5945719 intergenic not near genes chr2R_5_5945001 chr2R_5945001 RAL-161 268 chr2R 5947934 5947965 chr2R 5948085 5948115 8 148 2.5 0.0 1.2 3.6 181 chr2R 5947934 intergenic not near genes chr2R 5948024 intergenic not near genes chr2R 5948115 intergenic not near genes chr2R_8_5945001 chr2R_5945001 RAL-161 269 chr2R 6050310 6050314 chr2R 6050403 6050407 4 93 3.0 0.0 1.5 1.6 97 chr2R 6050310 intergenic CG34212 - chr2R 6050358 intergenic CG34212 - chr2R 6050407 intergenic CG34212 - chr2R_4_6050001 chr2R_6050001 RAL-161 270 chr2R 6058143 6058179 chr2R 6058235 6058271 7 90 4.0 1.5 2.8 1.8 128 chr2R 6058143 intron,exon CCHa2-R +,CG7856 - chr2R 6058207 intron,exon CCHa2-R +,CG7856 - chr2R 6058271 intron,exon CCHa2-R +,CG7856 - chr2R_7_6055001 chr2R_6055001 RAL-161 271 chr2R 6065753 6065779 chr2R 6065865 6065871 6 104 3.5 4.5 4.0 1.2 118 chr2R 6065753 intron CCHa2-R + chr2R 6065812 intron CCHa2-R + chr2R 6065871 intron CCHa2-R + chr2R_6_6065001 chr2R_6065001 RAL-161 272 chr2R 6096716 6096750 chr2R 6101910 6101947 BS 9 5194 5.5 3.5 4.5 1.6 5231 chr2R 6096716 intron EcR - chr2R 6099332 intron EcR - chr2R 6101947 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-161 273 chr2R 6108680 6108706 chr2R 6108788 6108812 7 101 4.5 3.0 3.8 1.5 132 chr2R 6108680 intron EcR - chr2R 6108746 intron EcR - chr2R 6108812 intron EcR - chr2R_7_6105001 chr2R_6105001 RAL-161 274 chr2R 6178678 6178713 chr2R 6178765 6178800 8 87 2.0 0.5 1.2 3.6 122 chr2R 6178678 intergenic not near genes chr2R 6178739 intergenic not near genes chr2R 6178800 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-161 275 chr2R 6494537 6494554 chr2R 6499299 6499314 F-element 5 4762 1.5 2.5 2.0 1.7 4777 chr2R 6494537 intergenic not near genes chr2R 6496926 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-161 276 chr2R 6691129 6691153 chr2R 6691208 6691232 6 79 2.5 1.5 2.0 2.0 103 chr2R 6691129 intron CG9422 + chr2R 6691180 intron CG9422 + chr2R 6691232 intron CG9422 + chr2R_6_6690001 chr2R_6690001 RAL-161 277 chr2R 6912832 6912862 chr2R 6913122 6913152 7 289 5.0 1.0 3.0 1.8 320 chr2R 6912832 intron CG30158 + chr2R 6912992 intron CG30158 + chr2R 6913152 intron CG30158 + chr2R_7_6910001 chr2R_6910001 RAL-161 278 chr2R 7052036 7052071 chr2R 7052115 7052150 8 78 3.5 4.0 3.8 1.7 114 chr2R 7052036 intergenic lbm + chr2R 7052093 intergenic lbm + chr2R 7052150 intergenic lbm + chr2R_8_7050001 chr2R_7050001 RAL-161 279 chr2R 7101612 7101648 chr2R 7101707 7101743 10 91 2.5 4.0 3.2 2.4 131 chr2R 7101612 intron esn + chr2R 7101678 intron esn + chr2R 7101743 intron esn + chr2R_10_7100001 chr2R_7100001 RAL-161 280 chr2R 7139948 7139953 chr2R 7141432 7141445 hopper2 4 1488 3.0 4.0 3.5 0.9 1497 chr2R 7139948 intergenic not near genes chr2R 7140696 intergenic not near genes chr2R 7141445 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-161 281 chr2R 7509969 7509996 chr2R 7510052 7510081 5 83 3.5 3.0 3.2 1.2 112 chr2R 7509969 exon CG12736 - chr2R 7510025 exon CG12736 - chr2R 7510081 exon CG12736 - chr2R_5_7510001 chr2R_7510001 RAL-161 282 chr2R 7623813 7623842 chr2R 7624633 7624662 9 822 25.0 23.5 24.2 0.4 849 chr2R 7623813 intron CG43340 + chr2R 7624238 intron CG43340 + chr2R 7624662 intron CG43340 + chr2R_9_7620001 chr2R_7620001 RAL-161 283 chr2R 7673416 7673429 chr2R 7673502 7673513 4 88 3.0 2.5 2.8 1.1 97 chr2R 7673416 intergenic mRpL52 - chr2R 7673464 intergenic mRpL52 - chr2R 7673513 intergenic mRpL52 - chr2R_4_7670001 chr2R_7670001 RAL-161 284 chr2R 7719282 7719554 chr2R 7719401 7719651 9 113 18.0 18.5 18.2 0.5 369 chr2R 7719282 exon CG18812 - chr2R 7719466 exon CG18812 - chr2R 7719651 exon CG18812 - chr2R_9_7715001 chr2R_7715001 RAL-161 285 chr2R 7719727 7719761 chr2R 7719842 7719854 8 110 20.5 18.5 19.5 0.4 127 chr2R 7719727 exon CG18812 - chr2R 7719790 intron CG18812 - chr2R 7719854 exon CG18812 - chr2R_8_7715001 chr2R_7715001 RAL-161 286 chr2R 7719943 7719960 chr2R 7725687 7725701 6 5742 11.5 14.0 12.8 0.4 5758 chr2R 7719943 exon CG18812 - chr2R 7722822 intron CG18812 - chr2R 7725701 exon CG18812 - chr2R_6_7720001 chr2R_7720001 RAL-161 287 chr2R 7719966 7719977 chr2R 7725686 7725707 6 5735 8.5 13.5 11.0 0.5 5741 chr2R 7719966 exon CG18812 - chr2R 7722836 intron CG18812 - chr2R 7725707 exon CG18812 - chr2R_6_7720001 chr2R_7720001 RAL-161 288 chr2R 7725945 7725975 chr2R 7727373 7727403 9 1428 9.5 23.5 16.5 0.5 1458 chr2R 7725945 exon CG18812 - chr2R 7726674 intron CG18812 - chr2R 7727403 intron CG18812 - chr2R_9_7725001 chr2R_7725001 RAL-161 289 chr2R 7760284 7760304 chr2R 7760421 7760423 6 134 3.0 6.5 4.8 1.0 139 chr2R 7760284 intron,intron CG30497 -,CG45093 - chr2R 7760354 intron,intron CG30497 -,CG45093 - chr2R 7760423 intron,intron CG30497 -,CG45093 - chr2R_6_7760001 chr2R_7760001 RAL-161 290 chr2R 7815673 7815705 chr2R 7822142 7822174 Burdock 4 6469 1.5 1.0 1.2 1.8 6501 chr2R 7815673 intergenic CG1882 + chr2R 7818924 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-161 291 chr2R 7842194 7842228 chr2R 7842282 7842300 5 81 2.0 2.0 2.0 1.7 106 chr2R 7842194 intron Dgk - chr2R 7842247 intron Dgk - chr2R 7842300 intron Dgk - chr2R_5_7840001 chr2R_7840001 RAL-161 292 chr2R 7853094 7853103 chr2R 7853180 7853188 5 86 3.5 4.0 3.8 1.0 94 chr2R 7853094 intron Dgk - chr2R 7853141 intron Dgk - chr2R 7853188 intron Dgk - chr2R_5_7850001 chr2R_7850001 RAL-161 293 chr2R 7869193 7869210 chr2R 7873974 7873996 Doc 5 4785 3.0 2.0 2.5 1.4 4803 chr2R 7869193 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7873996 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-161 294 chr2R 7892149 7892172 chr2R 7892373 7892394 4 224 1.5 3.0 2.2 1.2 245 chr2R 7892149 intron CG30377 + chr2R 7892272 intron CG30377 + chr2R 7892394 intron CG30377 + chr2R_4_7890001 chr2R_7890001 RAL-161 295 chr2R 7901690 7901713 chr2R 7901854 7901881 6 164 3.5 1.5 2.5 1.7 191 chr2R 7901690 intron CG30377 + chr2R 7901786 intron CG30377 + chr2R 7901881 intron CG30377 + chr2R_6_7900001 chr2R_7900001 RAL-161 296 chr2R 7919978 7920006 chr2R 7924495 7924530 8 4522 16.0 37.0 26.5 0.3 4552 chr2R 7919978 intron Cul1 + chr2R 7922254 exon Or43b - chr2R 7924530 exon Kdm4A - chr2R_8_7920001 chr2R_7920001 RAL-161 297 chr2R 8076678 8076705 chr2R 8076758 8076785 10 78 3.5 0.5 2.0 3.3 107 chr2R 8076678 intron lig + chr2R 8076732 intron lig + chr2R 8076785 intron lig + chr2R_10_8075001 chr2R_8075001 RAL-161 298 chr2R 8249565 8249849 chr2R 8249647 8249943 8 88 1.0 2.5 1.8 2.9 378 chr2R 8249565 5` UTR CG44439 - chr2R 8249754 intergenic CG44439 - chr2R 8249943 intergenic CG44439 - chr2R_8_8245001 chr2R_8245001 RAL-161 299 chr2R 8266533 8266566 chr2R 8266651 8266657 6 108 3.5 3.5 3.5 1.3 124 chr2R 8266533 intron CG30375 - chr2R 8266595 exon CG30375 - chr2R 8266657 exon CG30375 - chr2R_6_8265001 chr2R_8265001 RAL-161 300 chr2R 8277639 8277667 chr2R 8277734 8277760 17 92 5.0 2.0 3.5 3.8 121 chr2R 8277639 5` UTR CR44280 + chr2R 8277700 5` UTR CR44280 + chr2R 8277760 5` UTR CR44280 + chr2R_17_8275001 chr2R_8275001 RAL-161 301 chr2R 8330869 8330891 chr2R 8331355 8331377 roo 5 485 1.5 0.0 0.8 2.8 508 chr2R 8330869 intron pdm3 + chr2R 8331123 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-161 302 chr2R 8341584 8341612 chr2R 8341677 8341705 5 89 4.0 3.0 3.5 1.1 121 chr2R 8341584 intron pdm3 + chr2R 8341644 intron pdm3 + chr2R 8341705 intron pdm3 + chr2R_5_8340001 chr2R_8340001 RAL-161 303 chr2R 8398215 8398243 chr2R 8402994 8403019 Doc 7 4779 4.0 5.0 4.5 1.3 4804 chr2R 8398215 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403019 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-161 304 chr2R 8403440 8403454 chr2R 8403523 8403537 5 83 3.0 3.0 3.0 1.2 97 chr2R 8403440 intron CG2121 - chr2R 8403488 intron CG2121 - chr2R 8403537 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-161 305 chr2R 8411147 8411162 chr2R 8413317 8413332 4 2170 14.0 8.0 11.0 0.3 2185 chr2R 8411147 intron CG2121 - chr2R 8412240 intergenic CG2121 - chr2R 8413332 intergenic not near genes chr2R_4_8410001 chr2R_8410001 RAL-161 306 chr2R 8453097 8453117 chr2R 8453513 8453530 6 415 2.5 2.5 2.5 1.7 433 chr2R 8453097 intergenic not near genes chr2R 8453314 intergenic Mal-A2 + chr2R 8453530 intergenic Mal-A2 + chr2R_6_8450001 chr2R_8450001 RAL-161 307 chr2R 8511620 8511638 chr2R 8511699 8511716 8 79 7.5 8.5 8.0 0.9 96 chr2R 8511620 intron mtt - chr2R 8511668 intron mtt - chr2R 8511716 intron mtt - chr2R_8_8510001 chr2R_8510001 RAL-161 308 chr2R 8714712 8714720 chr2R 8714777 8714807 4 81 0.0 1.0 0.5 2.7 95 chr2R 8714712 3` UTR PGRP-SC1b + chr2R 8714760 3` UTR PGRP-SC1b + chr2R 8714807 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-161 309 chr2R 8722762 8722789 chr2R 8723003 8723030 pogo 10 240 3.0 3.5 3.2 2.4 268 chr2R 8722762 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723030 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-161 310 chr2R 8967132 8967153 chr2R 8967222 8967242 5 89 1.0 0.5 0.8 2.8 110 chr2R 8967132 intron CG8216 - chr2R 8967187 intron CG8216 - chr2R 8967242 intron CG8216 - chr2R_5_8965001 chr2R_8965001 RAL-161 311 chr2R 9055788 9055815 chr2R 9055868 9055895 6 80 3.0 1.0 2.0 2.0 107 chr2R 9055788 intron CG13743 - chr2R 9055842 intron CG13743 - chr2R 9055895 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-161 312 chr2R 9161972 9162004 chr2R 9162056 9162089 4 85 1.5 0.5 1.0 2.0 117 chr2R 9161972 5` UTR CR44283 + chr2R 9162030 intergenic CG8046 -,CR44283 + chr2R 9162089 3` UTR CG8046 - chr2R_4_9160001 chr2R_9160001 RAL-161 313 chr2R 9212697 9212719 chr2R 9213183 9213189 roo 5 481 1.5 4.5 3.0 1.2 492 chr2R 9212697 intergenic CR45309 + chr2R 9212943 intergenic CR45309 + chr2R 9213189 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-161 314 chr2R 9347688 9347722 chr2R 9347796 9347829 10 102 0.0 2.5 1.2 4.5 141 chr2R 9347688 intron,intron,3` UTR CG13739 -,CG13954 -,Or45a + chr2R 9347758 intron,intron,3` UTR CG13739 -,CG13954 -,Or45a + chr2R 9347829 intron,intron,3` UTR CG13739 -,CG13954 -,Or45a + chr2R_10_9345001 chr2R_9345001 RAL-161 315 chr2R 9368142 9368153 chr2R 9368211 9368227 8 72 3.5 0.0 1.8 2.9 85 chr2R 9368142 intron CG13954 - chr2R 9368184 intron CG13954 - chr2R 9368227 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-161 316 chr2R 9510667 9510698 chr2R 9510783 9510814 4 114 2.0 2.0 2.0 1.3 147 chr2R 9510667 intron brp + chr2R 9510740 intron brp + chr2R 9510814 intron brp + chr2R_4_9510001 chr2R_9510001 RAL-161 317 chr2R 9548572 9548602 chr2R 9548800 9548830 10 227 1.5 3.0 2.2 3.1 258 chr2R 9548572 intergenic not near genes chr2R 9548701 intergenic not near genes chr2R 9548830 intergenic not near genes chr2R_10_9545001 chr2R_9545001 RAL-161 318 chr2R 9651031 9651062 chr2R 9651114 9651145 8 80 2.5 3.5 3.0 2.0 114 chr2R 9651031 intron Mmp2 - chr2R 9651088 intron Mmp2 - chr2R 9651145 intron Mmp2 - chr2R_8_9650001 chr2R_9650001 RAL-161 319 chr2R 9945446 9945469 chr2R 9945625 9945665 BS 6 188 1.0 0.0 0.5 4.0 219 chr2R 9945446 intron Mef2 - chr2R 9945556 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-161 320 chr2R 10005850 10005878 chr2R 10007015 10007021 1360 13 1160 4.5 5.0 4.8 2.2 1171 chr2R 10005850 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007021 intron Pka-R2 - chr2R_13_10005001 chr2R_10005001 RAL-161 321 chr2R 10266507 10266525 chr2R 10266598 10266608 6 87 4.0 1.5 2.8 1.6 101 chr2R 10266507 intron CG12910 + chr2R 10266558 intron CG12910 + chr2R 10266608 intron CG12910 + chr2R_6_10265001 chr2R_10265001 RAL-161 322 chr2R 10267035 10267054 chr2R 10267173 10267185 5 139 2.5 2.0 2.2 1.6 150 chr2R 10267035 intron CG12910 + chr2R 10267110 exon CG12910 + chr2R 10267185 exon CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-161 323 chr2R 10352676 10352700 chr2R 10352753 10352777 5 77 2.0 1.5 1.8 1.8 101 chr2R 10352676 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352777 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-161 324 chr2R 10358537 10358560 chr2R 10358647 10358669 10 108 8.0 2.0 5.0 1.7 132 chr2R 10358537 intron CG42732 - chr2R 10358603 intron CG42732 - chr2R 10358669 intron CG42732 - chr2R_10_10355001 chr2R_10355001 RAL-161 325 chr2R 10387977 10388001 chr2R 10388074 10388088 6 95 0.0 3.5 1.8 2.1 111 chr2R 10387977 intron CG42732 - chr2R 10388032 intron CG42732 - chr2R 10388088 intron CG42732 - chr2R_6_10385001 chr2R_10385001 RAL-161 326 chr2R 10454100 10454129 chr2R 10454177 10454206 8 77 1.0 2.5 1.8 2.9 106 chr2R 10454100 intron,intron Galphao +,Cyp49a1 - chr2R 10454153 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_8_10450001 chr2R_10450001 RAL-161 327 chr2R 10469027 10469055 chr2R 10469153 10469181 11 126 3.0 1.5 2.2 3.4 154 chr2R 10469027 intron CG11777 + chr2R 10469104 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-161 328 chr2R 10585577 10585591 chr2R 10594158 10594174 Tirant 5 8582 1.0 2.0 1.5 2.0 8597 chr2R 10585577 intron psq + chr2R 10589876 intron psq + chr2R 10594174 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-161 329 chr2R 10668075 10668083 chr2R 10668143 10668159 4 70 4.0 5.0 4.5 0.7 84 chr2R 10668075 intergenic not near genes chr2R 10668117 intergenic not near genes chr2R 10668159 intergenic not near genes chr2R_4_10665001 chr2R_10665001 RAL-161 330 chr2R 10909398 10909423 chr2R 10909511 10909536 4 113 0.5 0.5 0.5 2.7 138 chr2R 10909398 intergenic not near genes chr2R 10909467 intergenic Obp47a + chr2R 10909536 intergenic Obp47a + chr2R_4_10905001 chr2R_10905001 RAL-161 331 chr2R 10937798 10937824 chr2R 10937936 10937962 4 138 0.0 3.0 1.5 1.6 164 chr2R 10937798 intergenic not near genes chr2R 10937880 intergenic not near genes chr2R 10937962 intergenic Spn47C - chr2R_4_10935001 chr2R_10935001 RAL-161 332 chr2R 10989476 10989485 chr2R 10989529 10989541 5 66 1.5 6.0 3.8 1.0 65 chr2R 10989476 intron luna - chr2R 10989508 intron luna - chr2R 10989541 intron luna - chr2R_5_10985001 chr2R_10985001 RAL-161 333 chr2R 10992172 10992185 chr2R 10992607 10992621 4 435 3.0 7.0 5.0 0.7 449 chr2R 10992172 intron luna - chr2R 10992396 intron luna - chr2R 10992621 intron luna - chr2R_4_10990001 chr2R_10990001 RAL-161 334 chr2R 11009815 11009847 chr2R 11018988 11019021 roo 7 9173 2.5 3.0 2.8 1.8 9206 chr2R 11009815 intron luna - chr2R 11014418 intron luna - chr2R 11019021 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-161 335 chr2R 11019876 11019912 chr2R 11024940 11024978 jockey 7 5065 2.5 0.5 1.5 2.8 5102 chr2R 11019876 intron luna - chr2R 11022427 intron luna - chr2R 11024978 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-161 336 chr2R 11032649 11032666 chr2R 11032740 11032760 6 93 1.5 1.0 1.2 2.7 111 chr2R 11032649 intron luna - chr2R 11032704 intron luna - chr2R 11032760 intron luna - chr2R_6_11030001 chr2R_11030001 RAL-161 337 chr2R 11067278 11067297 chr2R 11067400 11067418 5 122 2.5 2.5 2.5 1.4 140 chr2R 11067278 intron luna - chr2R 11067348 intron luna - chr2R 11067418 intron luna - chr2R_5_11065001 chr2R_11065001 RAL-161 338 chr2R 11129817 11129838 chr2R 11129899 11129905 5 78 1.5 1.5 1.5 2.0 88 chr2R 11129817 intergenic not near genes chr2R 11129861 intergenic not near genes chr2R 11129905 intergenic not near genes chr2R_5_11125001 chr2R_11125001 RAL-161 339 chr2R 11192097 11192105 chr2R 11192185 11192193 4 88 5.0 1.0 3.0 1.0 96 chr2R 11192097 intron shn + chr2R 11192145 intron shn + chr2R 11192193 intron shn + chr2R_4_11190001 chr2R_11190001 RAL-161 340 chr2R 11254865 11254885 chr2R 11254953 11254970 4 87 2.0 2.0 2.0 1.3 105 chr2R 11254865 intergenic Cpr47Eb + chr2R 11254918 intergenic Cpr47Eb + chr2R 11254970 intergenic Cpr47Eb + chr2R_4_11250001 chr2R_11250001 RAL-161 341 chr2R 11292972 11292997 chr2R 11293051 11293076 9 77 2.5 0.0 1.2 4.1 104 chr2R 11292972 exon,3` UTR dare -,CG30033 + chr2R 11293024 5` UTR,3` UTR dare -,CG30033 + chr2R 11293076 5` UTR,3` UTR dare -,CG30033 + chr2R_9_11290001 chr2R_11290001 RAL-161 342 chr2R 11344147 11344155 chr2R 11344243 11344250 5 96 0.0 4.0 2.0 1.7 103 chr2R 11344147 intergenic alphaTry - chr2R 11344198 intergenic alphaTry - chr2R 11344250 intergenic alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-161 343 chr2R 11415518 11415551 chr2R 11418667 11418700 opus 8 3147 0.5 2.5 1.5 3.2 3182 chr2R 11415518 intron Drip - chr2R 11417109 intron Drip - chr2R 11418700 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-161 344 chr2R 11425723 11425748 chr2R 11425806 11425835 10 86 3.0 2.5 2.8 2.6 112 chr2R 11425723 intron Drip - chr2R 11425779 intron Drip - chr2R 11425835 intron Drip - chr2R_10_11425001 chr2R_11425001 RAL-161 345 chr2R 11472649 11472680 chr2R 11473846 11473877 pogo 12 1196 3.5 2.0 2.8 3.2 1228 chr2R 11472649 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_12_11470001 chr2R_11470001 RAL-161 346 chr2R 11485114 11485142 chr2R 11485195 11485224 9 78 4.0 1.5 2.8 2.4 110 chr2R 11485114 intron inv + chr2R 11485169 intron inv + chr2R 11485224 intron inv + chr2R_9_11485001 chr2R_11485001 RAL-161 347 chr2R 11537218 11537249 chr2R 11537293 11537326 6 77 0.0 4.5 2.2 1.9 108 chr2R 11537218 intergenic not near genes chr2R 11537272 intergenic not near genes chr2R 11537326 intergenic not near genes chr2R_6_11535001 chr2R_11535001 RAL-161 348 chr2R 11577164 11577184 chr2R 11577243 11577257 5 75 3.5 2.5 3.0 1.2 93 chr2R 11577164 intergenic not near genes chr2R 11577210 intergenic not near genes chr2R 11577257 intergenic not near genes chr2R_5_11575001 chr2R_11575001 RAL-161 349 chr2R 11636079 11636114 chr2R 11636171 11636206 8 90 1.5 5.0 3.2 1.9 127 chr2R 11636079 intron CG9005 - chr2R 11636142 intron CG9005 - chr2R 11636206 intron CG9005 - chr2R_8_11635001 chr2R_11635001 RAL-161 350 chr2R 11945885 11945913 chr2R 11945961 11945990 9 75 3.0 3.0 3.0 2.2 105 chr2R 11945885 intron CG13188 + chr2R 11945938 intron CG13188 + chr2R 11945990 intron CG13188 + chr2R_9_11945001 chr2R_11945001 RAL-161 351 chr2R 11997395 11997418 chr2R 11997841 11997850 8 444 2.0 2.0 2.0 2.7 455 chr2R 11997395 intergenic not near genes chr2R 11997622 intergenic not near genes chr2R 11997850 intergenic not near genes chr2R_8_11995001 chr2R_11995001 RAL-161 352 chr2R 8518789 8518797 chr2R 12066186 12066191 5 3547395 0.5 12.0 6.2 0.7 3547402 chr2R 8518789 intron mtt - chr2R 10292490 intron CAP + chr2R 12066191 intron CG8888 - chr2R_5_10290001 chr2R_10290001 RAL-161 353 chr2R 8518778 8518790 chr2R 12066194 12066197 5 3547405 0.5 10.5 5.5 0.8 3547419 chr2R 8518778 intron mtt - chr2R 10292488 intron CAP + chr2R 12066197 intron CG8888 - chr2R_5_10290001 chr2R_10290001 RAL-161 354 chr2R 12145911 12145946 chr2R 12148607 12148639 14 2699 25.5 37.0 31.2 0.4 2728 chr2R 12145911 exon Hen1 + chr2R 12147275 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_14_12145001 chr2R_12145001 RAL-161 355 chr2R 12187472 12187508 chr2R 12190088 12190124 29 2620 93.5 61.0 77.2 0.4 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_29_12185001 chr2R_12185001 RAL-161 356 chr2R 12210143 12210164 chr2R 12210224 12210245 7 81 2.0 5.0 3.5 1.6 102 chr2R 12210143 exon Sr-CII - chr2R 12210194 intron Sr-CII - chr2R 12210245 intron Sr-CII - chr2R_7_12210001 chr2R_12210001 RAL-161 357 chr2R 12363379 12363412 chr2R 12363811 12363844 7 431 3.0 0.5 1.8 2.5 465 chr2R 12363379 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363844 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-161 358 chr2R 12385344 12385372 chr2R 12385425 12385433 7 78 0.0 2.0 1.0 3.5 89 chr2R 12385344 intergenic not near genes chr2R 12385388 intergenic not near genes chr2R 12385433 intergenic not near genes chr2R_7_12385001 chr2R_12385001 RAL-161 359 chr2R 12481144 12481169 chr2R 12482941 12482971 roo 6 1787 5.0 1.5 3.2 1.4 1827 chr2R 12481144 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482971 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-161 360 chr2R 12492099 12492120 chr2R 12492185 12492213 6 90 5.5 0.0 2.8 1.6 114 chr2R 12492099 intron fdl - chr2R 12492156 intron fdl - chr2R 12492213 intron fdl - chr2R_6_12490001 chr2R_12490001 RAL-161 361 chr2R 12501700 12501712 chr2R 12503862 12503874 Rt1c 7 2161 3.5 4.0 3.8 1.5 2174 chr2R 12501700 intron fdl - chr2R 12502787 intron fdl - chr2R 12503874 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-161 362 chr2R 12789300 12789327 chr2R 12797658 12797689 roo 9 8355 3.5 2.0 2.8 2.4 8389 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793494 intron,intron sca +,CR45137 - chr2R 12797689 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 RAL-161 363 chr2R 12819446 12819478 chr2R 12824515 12824546 jockey 9 5068 1.5 2.5 2.0 3.0 5100 chr2R 12819446 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_9_12820001 chr2R_12820001 RAL-161 364 chr2R 12927632 12927639 chr2R 12927716 12927723 4 84 3.5 2.0 2.8 1.1 91 chr2R 12927632 intron sug + chr2R 12927678 intron sug + chr2R 12927723 intron sug + chr2R_4_12925001 chr2R_12925001 RAL-161 365 chr2R 13089760 13089782 chr2R 13089870 13089892 8 108 3.0 2.5 2.8 2.1 132 chr2R 13089760 intergenic not near genes chr2R 13089826 intergenic not near genes chr2R 13089892 intergenic not near genes chr2R_8_13085001 chr2R_13085001 RAL-161 366 chr2R 13136834 13136863 chr2R 13141631 13141661 Doc 12 4798 6.5 2.0 4.2 2.3 4827 chr2R 13136834 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141661 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-161 367 chr2R 13431493 13431510 chr2R 13431572 13431589 4 79 0.0 1.0 0.5 2.7 96 chr2R 13431493 intron CG42321 - chr2R 13431541 intron CG42321 - chr2R 13431589 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-161 368 chr2R 13438860 13438889 chr2R 13440178 13440207 7 1321 6.5 27.5 17.0 0.4 1347 chr2R 13438860 5` UTR CG42321 - chr2R 13439534 3` UTR cnn - chr2R 13440207 exon cnn - chr2R_7_13435001 chr2R_13435001 RAL-161 369 chr2R 13498746 13498752 chr2R 13498831 13498837 4 85 5.5 1.5 3.5 0.9 91 chr2R 13498746 intron drk - chr2R 13498792 intron drk - chr2R 13498837 intron drk - chr2R_4_13495001 chr2R_13495001 RAL-161 370 chr2R 13580499 13580521 chr2R 13580849 13580869 jockey 4 350 0.5 4.5 2.5 1.1 370 chr2R 13580499 3` UTR CG6191 - chr2R 13580684 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580869 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-161 371 chr2R 13692317 13692347 chr2R 13692401 13692431 5 84 1.0 0.5 0.8 2.8 114 chr2R 13692317 intron,intron fas +,CG6220 - chr2R 13692374 intron,intron fas +,CG6220 - chr2R 13692431 intron,intron fas +,CG6220 - chr2R_5_13690001 chr2R_13690001 RAL-161 372 chr2R 13768981 13769007 chr2R 13769079 13769106 6 98 2.0 4.5 3.2 1.4 125 chr2R 13768981 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769106 intergenic not near genes chr2R_6_13765001 chr2R_13765001 RAL-161 373 chr2R 13905619 13905633 chr2R 13907601 13907615 Rt1a 4 1980 0.0 5.5 2.8 1.1 1996 chr2R 13905619 intron shot - chr2R 13906617 intron shot - chr2R 13907615 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-161 374 chr2R 14393868 14393890 chr2R 14393950 14393975 12 84 6.5 1.5 4.0 2.4 107 chr2R 14393868 intergenic not near genes chr2R 14393922 intergenic not near genes chr2R 14393975 intergenic not near genes chr2R_12_14390001 chr2R_14390001 RAL-161 375 chr2R 14467308 14467325 chr2R 14476466 14476483 roo 6 9157 3.5 7.0 5.2 1.0 9175 chr2R 14467308 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476483 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-161 376 chr2R 14566449 14566461 chr2R 14566535 14566547 7 86 2.5 1.0 1.8 2.5 98 chr2R 14566449 intron ttv + chr2R 14566498 intron ttv + chr2R 14566547 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-161 377 chr2R 14634295 14634316 chr2R 14634383 14634404 9 88 0.5 5.5 3.0 2.2 109 chr2R 14634295 intergenic not near genes chr2R 14634350 intergenic not near genes chr2R 14634404 intergenic not near genes chr2R_9_14630001 chr2R_14630001 RAL-161 378 chr2R 14850058 14850088 chr2R 14850164 14850193 10 102 18.0 19.0 18.5 0.5 135 chr2R 14850058 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850193 exon SMC2 - chr2R_10_14850001 chr2R_14850001 RAL-161 379 chr2R 14917245 14917266 chr2R 14917335 14917337 7 87 1.0 2.0 1.5 2.8 92 chr2R 14917245 intron CG10249 - chr2R 14917291 intron CG10249 - chr2R 14917337 intron CG10249 - chr2R_7_14915001 chr2R_14915001 RAL-161 380 chr2R 14922145 14922172 chr2R 14922217 14922237 8 74 3.0 1.5 2.2 2.5 92 chr2R 14922145 intron CG10249 - chr2R 14922191 intron CG10249 - chr2R 14922237 intron CG10249 - chr2R_8_14920001 chr2R_14920001 RAL-161 381 chr2R 14987385 14987414 chr2R 14987529 14987557 5 144 1.0 0.0 0.5 3.3 172 chr2R 14987385 intron pcs + chr2R 14987471 intron pcs + chr2R 14987557 intron pcs + chr2R_5_14985001 chr2R_14985001 RAL-161 382 chr2R 15065620 15065650 chr2R 15065696 15065727 6 78 1.0 3.0 2.0 2.0 107 chr2R 15065620 intergenic not near genes chr2R 15065674 intergenic not near genes chr2R 15065727 intergenic not near genes chr2R_6_15065001 chr2R_15065001 RAL-161 383 chr2R 15119317 15119328 chr2R 15127798 15127806 Tirant 5 8479 6.0 1.5 3.8 1.0 8489 chr2R 15119317 intron chn + chr2R 15123562 intron chn + chr2R 15127806 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-161 384 chr2R 15119329 15119350 chr2R 15127797 15127830 Tirant 6 8477 4.0 1.5 2.8 1.6 8501 chr2R 15119329 intron chn + chr2R 15123580 intron chn + chr2R 15127830 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-161 385 chr2R 15137971 15138001 chr2R 15138049 15138083 6 78 1.0 0.0 0.5 4.0 112 chr2R 15137971 intron chn + chr2R 15138027 intron chn + chr2R 15138083 intron chn + chr2R_6_15135001 chr2R_15135001 RAL-161 386 chr2R 15429557 15429575 chr2R 15429634 15429653 7 77 3.0 3.0 3.0 1.8 96 chr2R 15429557 intron CG43729 + chr2R 15429605 intron CG43729 + chr2R 15429653 intron CG43729 + chr2R_7_15425001 chr2R_15425001 RAL-161 387 chr2R 15740494 15740516 chr2R 15740569 15740582 4 74 2.5 4.0 3.2 1.0 88 chr2R 15740494 intron CG30089 + chr2R 15740538 intron CG30089 + chr2R 15740582 intron CG30089 + chr2R_4_15740001 chr2R_15740001 RAL-161 388 chr2R 16054953 16054962 chr2R 16055035 16055037 10 81 11.0 10.0 10.5 0.9 84 chr2R 16054953 intron CG8405 + chr2R 16054995 intron CG8405 + chr2R 16055037 intron CG8405 + chr2R_10_16050001 chr2R_16050001 RAL-161 389 chr2R 16380133 16380146 chr2R 16380228 16380244 4 96 2.5 0.0 1.2 1.8 111 chr2R 16380133 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380188 3` UTR CR45317 - chr2R 16380244 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_4_16380001 chr2R_16380001 RAL-161 390 chr2R 16392960 16392966 chr2R 16393189 16393197 4 231 0.0 1.5 0.8 2.2 237 chr2R 16392960 intron Sema-2b + chr2R 16393078 intron Sema-2b + chr2R 16393197 intron Sema-2b + chr2R_4_16390001 chr2R_16390001 RAL-161 391 chr2R 16436672 16436700 chr2R 16436749 16436778 4 74 3.5 8.0 5.8 0.6 106 chr2R 16436672 intergenic not near genes chr2R 16436725 intergenic not near genes chr2R 16436778 intergenic not near genes chr2R_4_16435001 chr2R_16435001 RAL-161 392 chr2R 16893788 16893805 chr2R 16893860 16893884 4 74 1.5 0.0 0.8 2.2 96 chr2R 16893788 intron CG8910 - chr2R 16893836 intron CG8910 - chr2R 16893884 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-161 393 chr2R 17147240 17147264 chr2R 17152270 17152295 jockey 5 5030 1.5 3.0 2.2 1.6 5055 chr2R 17147240 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152295 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-161 394 chr2R 17236511 17236537 chr2R 17241715 17241736 copia 6 5203 1.5 5.5 3.5 1.3 5225 chr2R 17236511 intron mbl + chr2R 17239124 intron mbl + chr2R 17241736 intron mbl + chr2R_6_17235001 chr2R_17235001 RAL-161 395 chr2R 17982937 17982952 chr2R 17983018 17983037 4 83 1.0 3.0 2.0 1.3 100 chr2R 17982937 intron dpr13 - chr2R 17982987 intron dpr13 - chr2R 17983037 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-161 396 chr2R 17994176 17994209 chr2R 17994377 17994410 8 200 3.5 1.5 2.5 2.3 234 chr2R 17994176 intron dpr13 - chr2R 17994293 intron dpr13 - chr2R 17994410 intron dpr13 - chr2R_8_17990001 chr2R_17990001 RAL-161 397 chr2R 18124338 18124367 chr2R 18124415 18124444 4 77 1.5 0.0 0.8 2.2 106 chr2R 18124338 intron stau - chr2R 18124391 intron stau - chr2R 18124444 intron stau - chr2R_4_18120001 chr2R_18120001 RAL-161 398 chr2R 18308293 18308319 chr2R 18308397 18308425 6 106 1.5 3.5 2.5 1.7 132 chr2R 18308293 intron sbb - chr2R 18308359 intron sbb - chr2R 18308425 intron sbb - chr2R_6_18305001 chr2R_18305001 RAL-161 399 chr2R 18358396 18358411 chr2R 18372608 18372623 roo 4 14212 1.5 0.0 0.8 2.2 14227 chr2R 18358396 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372623 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-161 400 chr2R 18408292 18408314 chr2R 18408413 18408435 8 120 3.5 4.0 3.8 1.7 143 chr2R 18408292 exon GstE8 + chr2R 18408364 exon GstE8 + chr2R 18408435 exon GstE8 + chr2R_8_18405001 chr2R_18405001 RAL-161 401 chr2R 18575816 18575825 chr2R 18581986 18582012 3S18 6 6178 5.0 4.0 4.5 1.1 6196 chr2R 18575816 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582012 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-161 402 chr2R 18590866 18590900 chr2R 18600018 18600052 roo 11 9150 3.5 2.0 2.8 2.9 9186 chr2R 18590866 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_11_18595001 chr2R_18595001 RAL-161 403 chr2R 18646413 18646437 chr2R 18646558 18646582 5 145 1.0 2.5 1.8 1.8 169 chr2R 18646413 intron SP2637 - chr2R 18646498 intron SP2637 - chr2R 18646582 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-161 404 chr2R 18678526 18678540 chr2R 18678646 18678659 6 120 1.5 0.0 0.8 3.3 133 chr2R 18678526 intergenic CG44434 -,CG44435 - chr2R 18678592 intergenic CG44434 -,CG44435 - chr2R 18678659 intergenic CG44434 -,CG44435 - chr2R_6_18675001 chr2R_18675001 RAL-161 405 chr2R 18785915 18785945 chr2R 18785992 18786024 10 76 6.5 1.0 3.8 2.1 109 chr2R 18785915 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786024 intron CG15080 + chr2R_10_18785001 chr2R_18785001 RAL-161 406 chr2R 18847610 18847640 chr2R 18847692 18847701 9 79 5.0 4.5 4.8 1.6 91 chr2R 18847610 exon CG15100 - chr2R 18847656 exon CG15100 - chr2R 18847701 exon CG15100 - chr2R_9_18845001 chr2R_18845001 RAL-161 407 chr2R 18924005 18924040 chr2R 18924113 18924123 16 98 2.5 5.5 4.0 3.2 118 chr2R 18924005 intron sano + chr2R 18924064 intron sano + chr2R 18924123 intron sano + chr2R_16_18920001 chr2R_18920001 RAL-161 408 chr2R 18964925 18964951 chr2R 18965001 18965027 4 76 2.0 2.5 2.2 1.2 102 chr2R 18964925 intergenic not near genes chr2R 18964976 intergenic not near genes chr2R 18965027 intergenic not near genes chr2R_4_18960001 chr2R_18960001 RAL-161 409 chr2R 18984473 18984494 chr2R 18984732 18984751 6 258 1.5 0.0 0.8 3.3 278 chr2R 18984473 intergenic not near genes chr2R 18984612 intergenic not near genes chr2R 18984751 intergenic not near genes chr2R_6_18980001 chr2R_18980001 RAL-161 410 chr2R 19010746 19010767 chr2R 19010861 19010863 6 110 3.5 1.5 2.5 1.7 117 chr2R 19010746 intergenic not near genes chr2R 19010804 intergenic not near genes chr2R 19010863 intergenic not near genes chr2R_6_19010001 chr2R_19010001 RAL-161 411 chr2R 19012935 19012968 chr2R 19013029 19013062 7 94 2.0 1.5 1.8 2.5 127 chr2R 19012935 intergenic not near genes chr2R 19012998 intergenic not near genes chr2R 19013062 intergenic not near genes chr2R_7_19010001 chr2R_19010001 RAL-161 412 chr2R 19072117 19072134 chr2R 19072193 19072196 6 72 4.5 3.5 4.0 1.2 79 chr2R 19072117 intron 5-HT1A + chr2R 19072156 intron 5-HT1A + chr2R 19072196 intron 5-HT1A + chr2R_6_19070001 chr2R_19070001 RAL-161 413 chr2R 19300973 19300988 chr2R 19301056 19301059 5 81 2.0 4.0 3.0 1.2 86 chr2R 19300973 intron Tab2 + chr2R 19301016 intron Tab2 + chr2R 19301059 intron Tab2 + chr2R_5_19300001 chr2R_19300001 RAL-161 414 chr2R 19714712 19714725 chr2R 19714788 19714801 6 76 0.0 1.0 0.5 4.0 89 chr2R 19714712 3` UTR CG8517 + chr2R 19714756 3` UTR CG8517 + chr2R 19714801 3` UTR CG8517 + chr2R_6_19710001 chr2R_19710001 RAL-161 415 chr2R 19776593 19776626 chr2R 19779916 19779948 jockey 9 3323 3.5 2.0 2.8 2.4 3355 chr2R 19776593 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779948 intergenic not near genes chr2R_9_19775001 chr2R_19775001 RAL-161 416 chr2R 19957431 19957464 chr2R 19962633 19962666 copia 13 5201 3.0 1.0 2.0 4.3 5235 chr2R 19957431 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962666 intergenic not near genes chr2R_13_19960001 chr2R_19960001 RAL-161 417 chr2R 20031912 20031930 chr2R 20032005 20032026 5 95 3.0 1.5 2.2 1.6 114 chr2R 20031912 intergenic not near genes chr2R 20031969 intergenic not near genes chr2R 20032026 intergenic not near genes chr2R_5_20030001 chr2R_20030001 RAL-161 418 chr2R 20036922 20036953 chr2R 20036998 20037029 5 75 3.0 1.5 2.2 1.6 107 chr2R 20036922 intergenic not near genes chr2R 20036976 intergenic not near genes chr2R 20037029 intergenic not near genes chr2R_5_20035001 chr2R_20035001 RAL-161 419 chr2R 20080603 20080623 chr2R 20080679 20080700 4 77 0.0 1.0 0.5 2.7 97 chr2R 20080603 intergenic not near genes chr2R 20080652 intergenic not near genes chr2R 20080700 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-161 420 chr2R 20382335 20382352 chr2R 20382420 20382437 6 84 4.0 0.5 2.2 1.9 102 chr2R 20382335 intergenic not near genes chr2R 20382386 intergenic not near genes chr2R 20382437 intergenic not near genes chr2R_6_20380001 chr2R_20380001 RAL-161 421 chr2R 20490537 20490560 chr2R 20490617 20490632 8 78 1.5 5.5 3.5 1.8 95 chr2R 20490537 intergenic CR44643 - chr2R 20490584 intergenic CR44643 - chr2R 20490632 intergenic CR44643 - chr2R_8_20490001 chr2R_20490001 RAL-161 422 chr2R 20739449 20739474 chr2R 20744217 20744242 F-element 6 4768 2.0 5.5 3.8 1.2 4793 chr2R 20739449 intron dpr + chr2R 20741846 intron dpr + chr2R 20744242 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-161 423 chr2R 20862331 20862347 chr2R 20862425 20862441 6 93 1.0 7.0 4.0 1.2 110 chr2R 20862331 intergenic not near genes chr2R 20862386 intergenic not near genes chr2R 20862441 intergenic not near genes chr2R_6_20860001 chr2R_20860001 RAL-161 424 chr2R 20962906 20962937 chr2R 20963004 20963035 9 98 1.5 1.5 1.5 3.6 129 chr2R 20962906 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963035 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-161 425 chr2R 21030250 21030264 chr2R 21030326 21030338 6 75 3.5 3.5 3.5 1.3 88 chr2R 21030250 intergenic CR45148 - chr2R 21030294 intergenic CR45148 - chr2R 21030338 intergenic CR45148 - chr2R_6_21030001 chr2R_21030001 RAL-161 426 chr2R 21103008 21103015 chr2R 21103082 21103096 4 78 3.5 4.5 4.0 0.8 88 chr2R 21103008 intron ktub + chr2R 21103052 intron ktub + chr2R 21103096 intron ktub + chr2R_4_21100001 chr2R_21100001 RAL-161 427 chr2R 21151117 21151141 chr2R 21153749 21153774 opus 7 2633 1.5 1.5 1.5 2.8 2657 chr2R 21151117 intron CG30389 - chr2R 21152446 intron CG30389 - chr2R 21153774 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-161 428 chr2R 21408372 21408404 chr2R 21408464 21408496 4 92 1.5 0.0 0.8 2.2 124 chr2R 21408372 intron Sdc - chr2R 21408434 intron Sdc - chr2R 21408496 intron Sdc - chr2R_4_21405001 chr2R_21405001 RAL-161 429 chr2R 21416789 21416807 chr2R 21416878 21416896 7 89 2.0 2.0 2.0 2.3 107 chr2R 21416789 intron Sdc - chr2R 21416842 intron Sdc - chr2R 21416896 intron Sdc - chr2R_7_21415001 chr2R_21415001 RAL-161 430 chr2R 21472318 21472338 chr2R 21472395 21472416 4 75 2.0 2.5 2.2 1.2 98 chr2R 21472318 intron Sdc - chr2R 21472367 intron Sdc - chr2R 21472416 intron Sdc - chr2R_4_21470001 chr2R_21470001 RAL-161 431 chr2R 21546041 21546066 chr2R 21546120 21546144 6 78 1.0 2.5 1.8 2.1 103 chr2R 21546041 intron Egfr + chr2R 21546092 intron Egfr + chr2R 21546144 intron Egfr + chr2R_6_21545001 chr2R_21545001 RAL-161 432 chr2R 21605926 21605950 chr2R 21606010 21606029 4 83 0.5 4.0 2.2 1.2 103 chr2R 21605926 3` UTR CG10433 - chr2R 21605978 3` UTR CG10433 - chr2R 21606029 3` UTR CG10433 - chr2R_4_21605001 chr2R_21605001 RAL-161 433 chr2R 21700160 21700185 chr2R 21700246 21700271 10 84 3.0 7.0 5.0 1.7 111 chr2R 21700160 intron HmgZ - chr2R 21700216 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_10_21700001 chr2R_21700001 RAL-161 434 chr2R 21738285 21738308 chr2R 21747445 21747468 roo 5 9157 2.5 2.5 2.5 1.4 9183 chr2R 21738285 intergenic not near genes chr2R 21742876 intergenic not near genes chr2R 21747468 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-161 435 chr2R 21753094 21753113 chr2R 21753579 21753598 roo 7 484 3.5 4.0 3.8 1.5 504 chr2R 21753094 intergenic not near genes chr2R 21753346 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-161 436 chr2R 21759567 21759578 chr2R 21759654 21759665 4 87 1.0 1.0 1.0 2.0 98 chr2R 21759567 intergenic not near genes chr2R 21759616 intergenic not near genes chr2R 21759665 intergenic not near genes chr2R_4_21755001 chr2R_21755001 RAL-161 437 chr2R 21809525 21809550 chr2R 21817765 21817790 roo 6 8240 1.0 2.0 1.5 2.4 8265 chr2R 21809525 intergenic not near genes chr2R 21813658 intergenic not near genes chr2R 21817790 intergenic not near genes chr2R_6_21810001 chr2R_21810001 RAL-161 438 chr2R 21857348 21857372 chr2R 21857437 21857441 5 84 1.0 2.0 1.5 2.0 93 chr2R 21857348 intergenic not near genes chr2R 21857394 intergenic not near genes chr2R 21857441 intergenic not near genes chr2R_5_21855001 chr2R_21855001 RAL-161 439 chr2R 21906289 21906302 chr2R 21906390 21906403 4 101 1.0 3.0 2.0 1.3 114 chr2R 21906289 intron Fili + chr2R 21906346 intron Fili + chr2R 21906403 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-161 440 chr2R 21919887 21919905 chr2R 21919962 21919993 5 85 1.0 1.5 1.2 2.3 106 chr2R 21919887 intron Fili + chr2R 21919940 intron Fili + chr2R 21919993 intron Fili + chr2R_5_21915001 chr2R_21915001 RAL-161 441 chr2R 21932246 21932278 chr2R 21932324 21932356 8 76 3.5 2.0 2.8 2.1 110 chr2R 21932246 intron Fili + chr2R 21932301 intron Fili + chr2R 21932356 intron Fili + chr2R_8_21930001 chr2R_21930001 RAL-161 442 chr2R 22053444 22053479 chr2R 22053540 22053573 12 95 2.0 2.5 2.2 3.8 129 chr2R 22053444 intergenic not near genes chr2R 22053508 intergenic not near genes chr2R 22053573 intergenic not near genes chr2R_12_22050001 chr2R_22050001 RAL-161 443 chr2R 22124308 22124330 chr2R 22124396 22124419 5 89 2.5 1.5 2.0 1.7 111 chr2R 22124308 3` UTR mei-S332 + chr2R 22124364 3` UTR mei-S332 + chr2R 22124419 intergenic mei-S332 +,GM130 - chr2R_5_22120001 chr2R_22120001 RAL-161 444 chr2R 22127352 22127384 chr2R 22127430 22127459 7 75 1.5 1.0 1.2 3.2 107 chr2R 22127352 exon GM130 - chr2R 22127406 5` UTR GM130 - chr2R 22127459 5` UTR GM130 - chr2R_7_22125001 chr2R_22125001 RAL-161 445 chr2R 22185674 22185701 chr2R 22185773 22185800 6 98 0.0 0.0 0.0 6.0 126 chr2R 22185674 3` UTR MED16 + chr2R 22185737 3` UTR MED16 + chr2R 22185800 3` UTR MED16 + chr2R_6_22185001 chr2R_22185001 RAL-161 446 chr2R 22349693 22349722 chr2R 22351476 22351506 jockey 4 1784 2.0 1.5 1.8 1.4 1813 chr2R 22349693 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351506 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-161 447 chr2R 22360383 22360400 chr2R 22360812 22360825 jockey 4 430 3.5 2.0 2.8 1.1 442 chr2R 22360383 intron Liprin-gamma - chr2R 22360604 intron Liprin-gamma - chr2R 22360825 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-161 448 chr2R 22432018 22432021 chr2R 22432127 22432145 4 114 2.0 4.5 3.2 1.0 127 chr2R 22432018 intergenic not near genes chr2R 22432082 intergenic not near genes chr2R 22432145 intergenic not near genes chr2R_4_22430001 chr2R_22430001 RAL-161 449 chr2R 22525773 22525787 chr2R 22529332 22529346 jockey 4 3559 1.0 4.5 2.8 1.1 3573 chr2R 22525773 intron px - chr2R 22527560 intron px - chr2R 22529346 intron px - chr2R_4_22525001 chr2R_22525001 RAL-161 450 chr2R 22767567 22767595 chr2R 22767652 22767680 7 85 2.5 2.5 2.5 2.0 113 chr2R 22767567 intron CG42260 - chr2R 22767624 intron CG42260 - chr2R 22767680 intron CG42260 - chr2R_7_22765001 chr2R_22765001 RAL-161 451 chr2R 22868254 22868282 chr2R 22868366 22868387 7 107 4.0 2.5 3.2 1.7 133 chr2R 22868254 5` UTR fd59A + chr2R 22868320 5` UTR fd59A + chr2R 22868387 5` UTR fd59A + chr2R_7_22865001 chr2R_22865001 RAL-161 452 chr2R 22905041 22905056 chr2R 22905176 22905191 6 134 2.5 0.0 1.2 2.7 150 chr2R 22905041 intron nahoda + chr2R 22905116 intron nahoda + chr2R 22905191 intron nahoda + chr2R_6_22905001 chr2R_22905001 RAL-161 453 chr2R 22925356 22925374 chr2R 22925450 22925470 4 96 3.0 4.0 3.5 0.9 114 chr2R 22925356 5` UTR CG42678 + chr2R 22925413 5` UTR CG42678 + chr2R 22925470 5` UTR CG42678 + chr2R_4_22925001 chr2R_22925001 RAL-161 454 chr2R 22957759 22957765 chr2R 22957841 22957846 5 82 0.0 0.0 0.0 5.0 87 chr2R 22957759 intergenic CR44780 - chr2R 22957802 intergenic CR44780 - chr2R 22957846 intergenic CR44780 - chr2R_5_22955001 chr2R_22955001 RAL-161 455 chr2R 23052657 23052675 chr2R 23052733 23052751 4 75 2.5 2.5 2.5 1.1 94 chr2R 23052657 intergenic not near genes chr2R 23052704 intergenic not near genes chr2R 23052751 intergenic not near genes chr2R_4_23050001 chr2R_23050001 RAL-161 456 chr2R 23156299 23156317 chr2R 23156431 23156449 6 132 5.0 3.0 4.0 1.2 150 chr2R 23156299 intron CG9899 + chr2R 23156374 intron CG9899 + chr2R 23156449 intron CG9899 + chr2R_6_23155001 chr2R_23155001 RAL-161 457 chr2R 23175037 23175067 chr2R 23175114 23175122 10 71 2.0 3.0 2.5 2.9 85 chr2R 23175037 intron CG34371 - chr2R 23175080 intron CG34371 - chr2R 23175122 intron CG34371 - chr2R_10_23175001 chr2R_23175001 RAL-161 458 chr2R 23186103 23186121 chr2R 23186248 23186266 5 145 1.5 1.5 1.5 2.0 163 chr2R 23186103 intron CG34371 - chr2R 23186184 intron CG34371 - chr2R 23186266 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-161 459 chr2R 23422650 23422680 chr2R 23422728 23422760 6 79 2.5 4.5 3.5 1.3 110 chr2R 23422650 intron CG9815 - chr2R 23422705 intron CG9815 - chr2R 23422760 intron CG9815 - chr2R_6_23420001 chr2R_23420001 RAL-161 460 chr2R 23423738 23423773 chr2R 23423896 23423931 8 156 1.5 3.0 2.2 2.5 193 chr2R 23423738 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423931 intron CG9815 - chr2R_8_23420001 chr2R_23420001 RAL-161 461 chr2R 23437232 23437243 chr2R 23437309 23437316 7 76 2.0 3.0 2.5 2.0 84 chr2R 23437232 intergenic not near genes chr2R 23437274 intergenic not near genes chr2R 23437316 intergenic not near genes chr2R_7_23435001 chr2R_23435001 RAL-161 462 chr2R 23487451 23487478 chr2R 23487532 23487559 10 81 0.0 3.0 1.5 4.0 108 chr2R 23487451 intron CG43795 + chr2R 23487505 intron CG43795 + chr2R 23487559 intron CG43795 + chr2R_10_23485001 chr2R_23485001 RAL-161 463 chr2R 23529572 23529606 chr2R 23537148 23537162 412 8 7570 4.5 2.5 3.5 1.8 7590 chr2R 23529572 intron bw - chr2R 23533367 intron bw - chr2R 23537162 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-161 464 chr2R 23607040 23607165 chr2R 23607121 23607253 8 81 3.0 2.0 2.5 2.3 213 chr2R 23607040 intron CG17664 - chr2R 23607146 intron CG17664 - chr2R 23607253 intron CG17664 - chr2R_8_23605001 chr2R_23605001 RAL-161 465 chr2R 23653978 23653999 chr2R 23654051 23654076 5 76 4.5 1.0 2.8 1.3 98 chr2R 23653978 3` UTR retn + chr2R 23654027 3` UTR retn + chr2R 23654076 3` UTR retn + chr2R_5_23650001 chr2R_23650001 RAL-161 466 chr2R 23705625 23705652 chr2R 23710908 23710930 6 5280 27.5 42.0 34.8 0.2 5305 chr2R 23705625 exon l(2)not - chr2R 23708278 intron,exon l(2)not -,l(2)tid + chr2R 23710930 intergenic not near genes chr2R_6_23705001 chr2R_23705001 RAL-161 467 chr2R 23718285 23718316 chr2R 23718426 23718457 10 141 41.0 36.0 38.5 0.3 172 chr2R 23718285 intron Sesn + chr2R 23718371 intron Sesn + chr2R 23718457 intron Sesn + chr2R_10_23715001 chr2R_23715001 RAL-161 468 chr2R 23914302 23914320 chr2R 23921926 23921944 412 7 7623 5.0 3.5 4.2 1.3 7642 chr2R 23914302 exon kcc + chr2R 23918123 intron kcc + chr2R 23921944 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-161 469 chr2R 23914323 23914332 chr2R 23921924 23921956 412 6 7608 4.0 3.5 3.8 1.2 7633 chr2R 23914323 exon kcc + chr2R 23918140 intron kcc + chr2R 23921956 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-161 470 chr2R 24031380 24031412 chr2R 24031464 24031496 10 79 2.0 0.0 1.0 5.0 116 chr2R 24031380 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031496 intergenic Chi -,CG30172 - chr2R_10_24030001 chr2R_24030001 RAL-161 471 chr2R 24045878 24045898 chr2R 24045962 24045982 5 84 2.0 0.0 1.0 2.5 104 chr2R 24045878 intron tsr - chr2R 24045930 intron tsr - chr2R 24045982 intron tsr - chr2R_5_24045001 chr2R_24045001 RAL-161 472 chr2R 24147070 24147089 chr2R 24154648 24154666 412 5 7578 6.0 5.0 5.5 0.8 7596 chr2R 24147070 intron Dat + chr2R 24150868 intron Dat + chr2R 24154666 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-161 473 chr2R 24444408 24444416 chr2R 24444489 24444490 5 79 3.5 2.5 3.0 1.2 82 chr2R 24444408 intergenic not near genes chr2R 24444449 intergenic not near genes chr2R 24444490 intergenic not near genes chr2R_5_24440001 chr2R_24440001 RAL-161 474 chr2R 24509307 24509336 chr2R 24509391 24509396 12 79 0.0 2.0 1.0 6.0 89 chr2R 24509307 intergenic Letm1 - chr2R 24509352 intergenic Letm1 - chr2R 24509396 intergenic Letm1 - chr2R_12_24505001 chr2R_24505001 RAL-161 475 chr2R 24518021 24518033 chr2R 24518107 24518119 4 86 11.0 8.5 9.8 0.4 98 chr2R 24518021 intergenic not near genes chr2R 24518070 intergenic not near genes chr2R 24518119 intergenic not near genes chr2R_4_24515001 chr2R_24515001 RAL-161 476 chr2R 24518036 24518046 chr2R 24518105 24518131 9 78 6.5 7.5 7.0 1.1 95 chr2R 24518036 intergenic not near genes chr2R 24518084 intergenic not near genes chr2R 24518131 intergenic not near genes chr2R_9_24515001 chr2R_24515001 RAL-161 477 chr2R 24582037 24582064 chr2R 24582116 24582142 8 79 2.5 3.0 2.8 2.1 105 chr2R 24582037 5` UTR pio + chr2R 24582090 intron pio + chr2R 24582142 intron pio + chr2R_8_24580001 chr2R_24580001 RAL-161 478 chr2R 24590113 24590144 chr2R 24590205 24590219 15 90 3.0 3.0 3.0 3.8 106 chr2R 24590113 intron pio + chr2R 24590166 intron pio + chr2R 24590219 intron pio + chr2R_15_24590001 chr2R_24590001 RAL-161 479 chr2R 24647591 24647615 chr2R 24655144 24655171 412 8 7556 1.5 0.5 1.0 4.0 7580 chr2R 24647591 intergenic not near genes chr2R 24651381 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-161 480 chr2R 24727885 24727916 chr2R 24735390 24735400 mdg1 14 7505 6.0 6.5 6.2 1.9 7515 chr2R 24727885 intron Mid1 - chr2R 24731642 intron Mid1 - chr2R 24735400 intron Mid1 - chr2R_14_24730001 chr2R_24730001 RAL-161 481 chr2R 24763610 24763644 chr2R 24765586 24765619 G2 15 1973 5.5 4.0 4.8 2.6 2009 chr2R 24763610 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_15_24760001 chr2R_24760001 RAL-161 482 chr2R 24859840 24859865 chr2R 24859926 24859951 5 85 1.0 1.0 1.0 2.5 111 chr2R 24859840 5` UTR CR44829 + chr2R 24859896 5` UTR CR44829 + chr2R 24859951 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-161 483 chr2R 25014543 25014576 chr2R 25014619 25014652 10 76 0.5 2.0 1.2 4.5 109 chr2R 25014543 intron uzip + chr2R 25014598 intron uzip + chr2R 25014652 intron uzip + chr2R_10_25010001 chr2R_25010001 RAL-161 484 chr2R 25018338 25018376 chr2R 25018439 25018451 8 98 3.0 3.5 3.2 1.9 113 chr2R 25018338 intron uzip + chr2R 25018394 intron uzip + chr2R 25018451 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-161 485 chr2R 25081605 25081632 chr2R 25082701 25082728 8 1096 6.0 3.0 4.5 1.5 1123 chr2R 25081605 intron gol - chr2R 25082166 intron gol - chr2R 25082728 intron gol - chr2R_8_25080001 chr2R_25080001 RAL-161 486 chr2R 25101279 25101309 chr2R 25101381 25101411 7 102 2.5 5.5 4.0 1.4 132 chr2R 25101279 intron lov - chr2R 25101345 intron lov - chr2R 25101411 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-161 487 chr2R 25104776 25104801 chr2R 25104901 25104925 4 125 2.0 0.5 1.2 1.8 149 chr2R 25104776 intron lov - chr2R 25104850 intron lov - chr2R 25104925 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-161 488 chr3L 62973 62999 chr3L 63345 63371 6 372 1.0 2.0 1.5 2.4 398 chr3L 62973 intergenic not near genes chr3L 63172 intergenic not near genes chr3L 63371 intergenic not near genes chr3L_6_60001 chr3L_60001 RAL-161 489 chr3L 69008 69016 chr3L 69089 69103 4 86 1.0 4.5 2.8 1.1 95 chr3L 69008 intergenic Lsp1gamma +,CR44510 + chr3L 69056 intergenic Lsp1gamma +,CR44510 + chr3L 69103 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-161 490 chr3L 402691 402713 chr3L 409744 409750 297 7 7051 3.0 4.0 3.5 1.6 7059 chr3L 402691 intergenic not near genes chr3L 406220 intergenic not near genes chr3L 409750 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-161 491 chr3L 514286 514303 chr3L 514363 514380 6 76 1.0 4.0 2.5 1.7 94 chr3L 514286 intron klar - chr3L 514333 intron klar - chr3L 514380 intron klar - chr3L_6_510001 chr3L_510001 RAL-161 492 chr3L 651390 651410 chr3L 651478 651498 7 87 5.0 1.5 3.2 1.7 108 chr3L 651390 intergenic Gale +,CG3402 - chr3L 651444 intergenic CG3402 -,Gale + chr3L 651498 intergenic CG3402 -,Gale + chr3L_7_650001 chr3L_650001 RAL-161 493 chr3L 668522 668549 chr3L 668620 668648 13 96 4.5 3.5 4.0 2.6 126 chr3L 668522 intergenic not near genes chr3L 668585 intergenic not near genes chr3L 668648 intergenic not near genes chr3L_13_665001 chr3L_665001 RAL-161 494 chr3L 832604 832636 chr3L 832691 832723 8 86 1.0 2.0 1.5 3.2 119 chr3L 832604 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832664 intron CG13900 - chr3L 832723 exon CG13900 - chr3L_8_830001 chr3L_830001 RAL-161 495 chr3L 857999 858032 chr3L 866480 866486 Tirant 7 8476 1.0 2.0 1.5 2.8 8487 chr3L 857999 intergenic not near genes chr3L 862242 intergenic not near genes chr3L 866486 intergenic CG12502 + chr3L_7_860001 chr3L_860001 RAL-161 496 chr3L 925177 925199 chr3L 932603 932625 mdg1 5 7426 1.5 0.5 1.0 2.5 7448 chr3L 925177 intron Glut1 + chr3L 928901 intron Glut1 + chr3L 932625 intron Glut1 + chr3L_5_925001 chr3L_925001 RAL-161 497 chr3L 933909 933943 chr3L 934012 934046 4 103 0.5 0.5 0.5 2.7 137 chr3L 933909 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-161 498 chr3L 939777 939801 chr3L 940893 940922 jockey 7 1120 3.0 3.5 3.2 1.7 1145 chr3L 939777 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-161 499 chr3L 1021375 1021405 chr3L 1021455 1021484 9 79 3.5 3.5 3.5 2.0 109 chr3L 1021375 intron trio - chr3L 1021430 intron trio - chr3L 1021484 intron trio - chr3L_9_1020001 chr3L_1020001 RAL-161 500 chr3L 1145243 1145259 chr3L 1145322 1145338 6 79 4.5 1.0 2.8 1.6 95 chr3L 1145243 intron bab2 - chr3L 1145290 intron bab2 - chr3L 1145338 intron bab2 - chr3L_6_1145001 chr3L_1145001 RAL-161 501 chr3L 1219598 1219624 chr3L 1227329 1227356 412 12 7732 5.5 4.5 5.0 2.0 7758 chr3L 1219598 intron mwh + chr3L 1223477 intron mwh + chr3L 1227356 intron mwh + chr3L_12_1220001 chr3L_1220001 RAL-161 502 chr3L 1396738 1396758 chr3L 1396822 1396838 7 83 2.5 1.5 2.0 2.3 100 chr3L 1396738 intron Ptp61F - chr3L 1396788 intron Ptp61F - chr3L 1396838 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-161 503 chr3L 1415776 1415808 chr3L 1415855 1415878 14 79 4.0 1.5 2.8 3.7 102 chr3L 1415776 intron Ptp61F - chr3L 1415827 intron Ptp61F - chr3L 1415878 intron Ptp61F - chr3L_14_1415001 chr3L_1415001 RAL-161 504 chr3L 1441395 1441417 chr3L 1441472 1441495 5 74 1.5 3.0 2.2 1.6 100 chr3L 1441395 intron Ptp61F - chr3L 1441445 intron Ptp61F - chr3L 1441495 intron Ptp61F - chr3L_5_1440001 chr3L_1440001 RAL-161 505 chr3L 1463420 1463438 chr3L 1463501 1463519 8 80 4.0 5.5 4.8 1.4 99 chr3L 1463420 intron Ptp61F - chr3L 1463470 intron Ptp61F - chr3L 1463519 intron Ptp61F - chr3L_8_1460001 chr3L_1460001 RAL-161 506 chr3L 1506006 1506023 chr3L 1513601 1513620 17.6 7 7597 2.0 3.5 2.8 1.8 7614 chr3L 1506006 intron,intron Psa +,cue - chr3L 1509813 intron,intron Psa +,cue - chr3L 1513620 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-161 507 chr3L 1923006 1923041 chr3L 1923096 1923131 7 90 0.0 4.0 2.0 2.3 125 chr3L 1923006 intron Dbx + chr3L 1923068 intron Dbx + chr3L 1923131 intron Dbx + chr3L_7_1920001 chr3L_1920001 RAL-161 508 chr3L 1924964 1924975 chr3L 1925102 1925113 4 137 2.0 1.0 1.5 1.6 149 chr3L 1924964 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925113 intron Dbx + chr3L_4_1925001 chr3L_1925001 RAL-161 509 chr3L 2013668 2013679 chr3L 2013739 2013757 6 77 0.0 3.0 1.5 2.4 89 chr3L 2013668 intergenic not near genes chr3L 2013712 intergenic not near genes chr3L 2013757 intergenic not near genes chr3L_6_2010001 chr3L_2010001 RAL-161 510 chr3L 2139207 2139221 chr3L 2139287 2139302 5 80 2.5 1.5 2.0 1.7 95 chr3L 2139207 intron zormin - chr3L 2139254 intron zormin - chr3L 2139302 intron zormin - chr3L_5_2135001 chr3L_2135001 RAL-161 511 chr3L 2168781 2168794 chr3L 2168872 2168885 4 91 5.0 2.5 3.8 0.8 104 chr3L 2168781 exon CG15879 - chr3L 2168833 intron CG15879 - chr3L 2168885 intron CG15879 - chr3L_4_2165001 chr3L_2165001 RAL-161 512 chr3L 2216583 2216618 chr3L 2216810 2216815 12 223 1.5 1.0 1.2 5.5 232 chr3L 2216583 intergenic not near genes chr3L 2216699 intergenic not near genes chr3L 2216815 intergenic not near genes chr3L_12_2215001 chr3L_2215001 RAL-161 513 chr3L 2344248 2344270 chr3L 2344326 2344326 6 75 2.5 4.5 3.5 1.3 78 chr3L 2344248 exon MsR1 + chr3L 2344287 exon MsR1 + chr3L 2344326 exon MsR1 + chr3L_6_2340001 chr3L_2340001 RAL-161 514 chr3L 2380363 2380372 chr3L 2380425 2380449 4 73 2.5 2.5 2.5 1.1 86 chr3L 2380363 intergenic not near genes chr3L 2380406 intergenic not near genes chr3L 2380449 intergenic not near genes chr3L_4_2380001 chr3L_2380001 RAL-161 515 chr3L 2411337 2411344 chr3L 2411417 2411424 4 80 1.0 4.5 2.8 1.1 87 chr3L 2411337 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411424 intron CG45186 + chr3L_4_2410001 chr3L_2410001 RAL-161 516 chr3L 2447507 2447536 chr3L 2456663 2456692 roo 5 9153 3.0 4.0 3.5 1.1 9185 chr3L 2447507 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-161 517 chr3L 2478885 2479037 chr3L 2478961 2479134 11 93 1.5 2.5 2.0 3.7 249 chr3L 2478885 intron CG45186 + chr3L 2479010 intron CG45186 + chr3L 2479134 intron CG45186 + chr3L_11_2475001 chr3L_2475001 RAL-161 518 chr3L 2533651 2533661 chr3L 2533733 2533737 4 77 5.5 6.0 5.8 0.6 86 chr3L 2533651 intron Spn - chr3L 2533694 intron Spn - chr3L 2533737 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-161 519 chr3L 2534613 2534646 chr3L 2534696 2534729 10 83 0.0 5.0 2.5 2.9 116 chr3L 2534613 intron Spn - chr3L 2534671 intron Spn - chr3L 2534729 exon Spn - chr3L_10_2530001 chr3L_2530001 RAL-161 520 chr3L 2631065 2631091 chr3L 2631172 2631201 9 109 2.5 4.0 3.2 2.1 136 chr3L 2631065 intergenic CR45660 - chr3L 2631133 intergenic CR45660 - chr3L 2631201 intergenic not near genes chr3L_9_2630001 chr3L_2630001 RAL-161 521 chr3L 2795723 2795743 chr3L 2795847 2795866 5 123 0.5 1.0 0.8 2.8 143 chr3L 2795723 intron CG43444 - chr3L 2795794 intron CG43444 - chr3L 2795866 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-161 522 chr3L 2854618 2854634 chr3L 2854679 2854695 11 72 3.5 0.0 1.8 3.9 77 chr3L 2854618 intron CG43444 - chr3L 2854656 intron CG43444 - chr3L 2854695 intron CG43444 - chr3L_11_2850001 chr3L_2850001 RAL-161 523 chr3L 3281465 3281471 chr3L 3281961 3281967 Doc 4 496 0.5 12.5 6.5 0.5 502 chr3L 3281465 intron CG12017 + chr3L 3281716 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-161 524 chr3L 3436294 3436310 chr3L 3436373 3436389 4 79 0.5 0.5 0.5 2.7 95 chr3L 3436294 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436389 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-161 525 chr3L 3475079 3475113 chr3L 3475523 3475556 jockey 9 443 1.5 2.5 2.0 3.0 477 chr3L 3475079 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_9_3475001 chr3L_3475001 RAL-161 526 chr3L 3484373 3484401 chr3L 3484549 3484576 4 176 1.0 4.0 2.5 1.1 203 chr3L 3484373 intron,exon CG42324 +,CG43074 - chr3L 3484474 intron,exon CG42324 +,CG43074 - chr3L 3484576 intron,exon CG42324 +,CG43074 - chr3L_4_3480001 chr3L_3480001 RAL-161 527 chr3L 3487063 3487092 chr3L 3487137 3487170 6 76 3.0 3.0 3.0 1.5 107 chr3L 3487063 intron CG42324 + chr3L 3487116 intron CG42324 + chr3L 3487170 intron CG42324 + chr3L_6_3485001 chr3L_3485001 RAL-161 528 chr3L 3601299 3601330 chr3L 3606610 3606641 copia 4 5310 0.5 1.5 1.0 2.0 5342 chr3L 3601299 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606641 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-161 529 chr3L 3619400 3619432 chr3L 3619494 3619526 4 94 0.5 1.0 0.8 2.2 126 chr3L 3619400 intergenic not near genes chr3L 3619463 intergenic not near genes chr3L 3619526 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-161 530 chr3L 3739329 3739361 chr3L 3739605 3739635 6 276 2.5 0.5 1.5 2.4 306 chr3L 3739329 intron CG32264 - chr3L 3739482 intron CG32264 - chr3L 3739635 intron CG32264 - chr3L_6_3735001 chr3L_3735001 RAL-161 531 chr3L 3815055 3815084 chr3L 3815136 3815165 10 81 1.0 0.0 0.5 6.7 110 chr3L 3815055 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815165 intron,intron Scsalpha +,CR43932 - chr3L_10_3815001 chr3L_3815001 RAL-161 532 chr3L 3921405 3921422 chr3L 3921669 3921685 5 264 2.5 2.5 2.5 1.4 280 chr3L 3921405 intron Eip63F-1 - chr3L 3921545 intron Eip63F-1 - chr3L 3921685 intron Eip63F-1 - chr3L_5_3920001 chr3L_3920001 RAL-161 533 chr3L 4342409 4342441 chr3L 4342488 4342508 12 74 4.5 4.5 4.5 2.2 99 chr3L 4342409 intron Cip4 - chr3L 4342458 intron Cip4 - chr3L 4342508 intron Cip4 - chr3L_12_4340001 chr3L_4340001 RAL-161 534 chr3L 4477577 4477605 chr3L 4478153 4478181 8 576 19.0 19.5 19.2 0.4 604 chr3L 4477577 intergenic not near genes chr3L 4477879 intergenic not near genes chr3L 4478181 intergenic not near genes chr3L_8_4475001 chr3L_4475001 RAL-161 535 chr3L 4519418 4519448 chr3L 4519495 4519525 4 77 0.0 1.0 0.5 2.7 107 chr3L 4519418 intron Tie - chr3L 4519472 intron Tie - chr3L 4519525 intron Tie - chr3L_4_4515001 chr3L_4515001 RAL-161 536 chr3L 4597218 4597247 chr3L 4597300 4597328 7 81 1.0 3.5 2.2 2.2 110 chr3L 4597218 intron Src64B - chr3L 4597273 intron Src64B - chr3L 4597328 intron Src64B - chr3L_7_4595001 chr3L_4595001 RAL-161 537 chr3L 4652578 4652600 chr3L 4652655 4652683 9 82 4.5 1.0 2.8 2.4 105 chr3L 4652578 intron axo - chr3L 4652630 intron axo - chr3L 4652683 intron axo - chr3L_9_4650001 chr3L_4650001 RAL-161 538 chr3L 4748702 4748716 chr3L 4748793 4748805 5 91 5.5 0.5 3.0 1.2 103 chr3L 4748702 intron RhoGEF64C + chr3L 4748754 intron RhoGEF64C + chr3L 4748805 intron RhoGEF64C + chr3L_5_4745001 chr3L_4745001 RAL-161 539 chr3L 4784959 4784991 chr3L 4785168 4785200 5 209 0.5 0.0 0.2 4.2 241 chr3L 4784959 intron RhoGEF64C + chr3L 4785080 intron RhoGEF64C + chr3L 4785200 intron RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-161 540 chr3L 4840412 4840419 chr3L 4840521 4840528 4 109 1.0 0.0 0.5 2.7 116 chr3L 4840412 intergenic CG13707 - chr3L 4840470 intergenic CG13707 - chr3L 4840528 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-161 541 chr3L 4846587 4846598 chr3L 4846680 4846688 4 94 5.0 7.0 6.0 0.6 101 chr3L 4846587 intergenic not near genes chr3L 4846638 intergenic not near genes chr3L 4846688 intergenic not near genes chr3L_4_4845001 chr3L_4845001 RAL-161 542 chr3L 4858305 4858328 chr3L 4858395 4858418 13 87 8.0 7.0 7.5 1.5 113 chr3L 4858305 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858418 intergenic not near genes chr3L_13_4855001 chr3L_4855001 RAL-161 543 chr3L 4958414 4958433 chr3L 4958502 4958516 5 86 0.0 0.5 0.2 4.2 102 chr3L 4958414 intron Con - chr3L 4958465 intron Con - chr3L 4958516 intron Con - chr3L_5_4955001 chr3L_4955001 RAL-161 544 chr3L 4967160 4967175 chr3L 4967250 4967282 9 103 1.5 2.5 2.0 3.0 122 chr3L 4967160 intron Con - chr3L 4967221 intron Con - chr3L 4967282 intron Con - chr3L_9_4965001 chr3L_4965001 RAL-161 545 chr3L 5190195 5190215 chr3L 5190307 5190332 5 120 1.0 0.0 0.5 3.3 137 chr3L 5190195 intron shep - chr3L 5190264 intron shep - chr3L 5190332 intron shep - chr3L_5_5190001 chr3L_5190001 RAL-161 546 chr3L 5265346 5265374 chr3L 5265453 5265481 14 104 5.0 4.5 4.8 2.4 135 chr3L 5265346 intron shep - chr3L 5265414 intron shep - chr3L 5265481 intron shep - chr3L_14_5265001 chr3L_5265001 RAL-161 547 chr3L 5388203 5388231 chr3L 5388527 5388550 7 323 2.0 2.0 2.0 2.3 347 chr3L 5388203 intergenic not near genes chr3L 5388376 intergenic not near genes chr3L 5388550 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-161 548 chr3L 5482951 5482980 chr3L 5483160 5483160 4 202 1.5 19.5 10.5 0.3 209 chr3L 5482951 exon CG4835 + chr3L 5483056 exon CG4835 + chr3L 5483160 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-161 549 chr3L 5549445 5549458 chr3L 5549522 5549535 4 76 2.0 4.0 3.0 1.0 90 chr3L 5549445 intron CG10625 - chr3L 5549490 intron CG10625 - chr3L 5549535 intron CG10625 - chr3L_4_5545001 chr3L_5545001 RAL-161 550 chr3L 5750039 5750073 chr3L 5750117 5750148 4 76 0.0 0.5 0.2 3.3 109 chr3L 5750039 3` UTR DnaJ-1 - chr3L 5750094 3` UTR DnaJ-1 - chr3L 5750148 3` UTR DnaJ-1 - chr3L_4_5750001 chr3L_5750001 RAL-161 551 chr3L 5836395 5836411 chr3L 5836475 5836492 6 79 1.0 1.5 1.2 2.7 97 chr3L 5836395 intron vn - chr3L 5836444 intron vn - chr3L 5836492 intron vn - chr3L_6_5835001 chr3L_5835001 RAL-161 552 chr3L 5910035 5910062 chr3L 5910276 5910303 pogo 4 241 0.5 0.0 0.2 3.3 268 chr3L 5910035 intron CG13288 + chr3L 5910169 intron CG13288 + chr3L 5910303 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-161 553 chr3L 5926315 5926350 chr3L 5926505 5926507 10 182 2.0 1.0 1.5 4.0 192 chr3L 5926315 intron Vap-33B + chr3L 5926411 intron Vap-33B + chr3L 5926507 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-161 554 chr3L 5987131 5987160 chr3L 5987220 5987249 5 89 0.5 0.5 0.5 3.3 118 chr3L 5987131 intergenic not near genes chr3L 5987190 intergenic not near genes chr3L 5987249 intergenic not near genes chr3L_5_5985001 chr3L_5985001 RAL-161 555 chr3L 6052657 6052667 chr3L 6052741 6052752 4 84 7.5 13.5 10.5 0.3 95 chr3L 6052657 exon Jon65Aii + chr3L 6052704 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-161 556 chr3L 6220918 6220947 chr3L 6230068 6230098 roo 7 9151 2.5 2.5 2.5 2.0 9180 chr3L 6220918 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-161 557 chr3L 6335011 6335031 chr3L 6335482 6335487 297 6 468 2.0 1.0 1.5 2.4 476 chr3L 6335011 intron CG13300 - chr3L 6335249 intron CG13300 - chr3L 6335487 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-161 558 chr3L 6372135 6372146 chr3L 6372219 6372230 5 84 7.5 0.0 3.8 1.0 95 chr3L 6372135 intergenic not near genes chr3L 6372182 intergenic not near genes chr3L 6372230 intergenic not near genes chr3L_5_6370001 chr3L_6370001 RAL-161 559 chr3L 6873216 6873237 chr3L 6873319 6873340 7 103 4.5 1.0 2.8 1.8 124 chr3L 6873216 intergenic not near genes chr3L 6873278 intergenic not near genes chr3L 6873340 intergenic not near genes chr3L_7_6870001 chr3L_6870001 RAL-161 560 chr3L 6934345 6934361 chr3L 6934456 6934472 4 110 0.5 1.0 0.8 2.2 127 chr3L 6934345 exon CG14820 + chr3L 6934408 intron CG14820 + chr3L 6934472 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-161 561 chr3L 6942062 6942086 chr3L 6942160 6942185 4 99 1.0 0.5 0.8 2.2 123 chr3L 6942062 intergenic not near genes chr3L 6942124 intergenic not near genes chr3L 6942185 intergenic not near genes chr3L_4_6940001 chr3L_6940001 RAL-161 562 chr3L 6974504 6974514 chr3L 6974605 6974615 4 101 0.0 4.5 2.2 1.2 111 chr3L 6974504 intron Galphai - chr3L 6974560 intron Galphai - chr3L 6974615 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-161 563 chr3L 7079603 7079630 chr3L 7079680 7079696 6 75 3.5 1.0 2.2 1.9 93 chr3L 7079603 intergenic not near genes chr3L 7079650 intergenic not near genes chr3L 7079696 intergenic not near genes chr3L_6_7075001 chr3L_7075001 RAL-161 564 chr3L 7150878 7150898 chr3L 7150952 7150973 5 75 0.5 1.0 0.8 2.8 95 chr3L 7150878 intron corn - chr3L 7150926 intron corn - chr3L 7150973 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-161 565 chr3L 7244941 7244954 chr3L 7245024 7245046 7 91 2.5 2.0 2.2 2.2 105 chr3L 7244941 exon mei-P22 + chr3L 7244994 exon mei-P22 + chr3L 7245046 exon mei-P22 + chr3L_7_7240001 chr3L_7240001 RAL-161 566 chr3L 7285448 7285464 chr3L 7285526 7285536 4 76 1.5 0.5 1.0 2.0 88 chr3L 7285448 intron unc-13-4A - chr3L 7285492 intron unc-13-4A - chr3L 7285536 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-161 567 chr3L 7358296 7358325 chr3L 7359580 7359606 13 1281 16.5 25.0 20.8 0.6 1310 chr3L 7358296 exon pst - chr3L 7358951 exon pst - chr3L 7359606 intron pst - chr3L_13_7355001 chr3L_7355001 RAL-161 568 chr3L 7375926 7375949 chr3L 7376002 7376025 6 76 3.0 1.0 2.0 2.0 99 chr3L 7375926 intron SMSr - chr3L 7375976 intron SMSr - chr3L 7376025 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-161 569 chr3L 7377317 7377348 chr3L 7380422 7380452 297 4 3105 0.0 1.5 0.8 2.2 3135 chr3L 7377317 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380452 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-161 570 chr3L 7572279 7572314 chr3L 7572366 7572401 14 85 1.5 1.5 1.5 5.6 122 chr3L 7572279 intergenic not near genes chr3L 7572340 intergenic not near genes chr3L 7572401 intergenic not near genes chr3L_14_7570001 chr3L_7570001 RAL-161 571 chr3L 7591171 7591181 chr3L 7591236 7591272 6 84 0.5 2.0 1.2 2.7 101 chr3L 7591171 intergenic CG7716 - chr3L 7591222 intergenic CG7716 - chr3L 7591272 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-161 572 chr3L 7749470 7749471 chr3L 11777678 11777678 14 4028208 3.0 14.5 8.8 1.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_14_9760001 chr3L_9760001 RAL-161 573 chr3L 7886525 7886544 chr3L 7889032 7889038 Stalker4 5 2511 0.0 2.5 1.2 2.3 2513 chr3L 7886525 intron CG32365 + chr3L 7887782 intron CG32365 + chr3L 7889038 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-161 574 chr3L 8209349 8209382 chr3L 8209427 8209460 8 77 1.5 1.5 1.5 3.2 111 chr3L 8209349 intergenic CG32364 - chr3L 8209404 intergenic CG32364 - chr3L 8209460 intergenic CG32364 - chr3L_8_8205001 chr3L_8205001 RAL-161 575 chr3L 8219565 8219591 chr3L 8219855 8219881 5 286 0.5 4.0 2.2 1.6 316 chr3L 8219565 intergenic not near genes chr3L 8219723 intergenic not near genes chr3L 8219881 intergenic not near genes chr3L_5_8215001 chr3L_8215001 RAL-161 576 chr3L 8331731 8331746 chr3L 8331808 8331814 5 77 3.0 4.5 3.8 1.0 83 chr3L 8331731 intergenic not near genes chr3L 8331772 intergenic not near genes chr3L 8331814 intergenic not near genes chr3L_5_8330001 chr3L_8330001 RAL-161 577 chr3L 8481790 8481805 chr3L 8490932 8490947 roo 6 9150 3.0 4.5 3.8 1.2 9157 chr3L 8481790 intron CG43163 - chr3L 8486368 intron CG43163 - chr3L 8490947 intron CG43163 - chr3L_6_8485001 chr3L_8485001 RAL-161 578 chr3L 8498305 8498326 chr3L 8505772 8505793 blood 6 7467 0.0 2.0 1.0 3.0 7488 chr3L 8498305 intron CG43163 - chr3L 8502049 intron CG43163 - chr3L 8505793 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-161 579 chr3L 8609081 8609107 chr3L 8609162 8609187 12 80 2.0 3.5 2.8 3.2 106 chr3L 8609081 intron CG6282 + chr3L 8609134 intron CG6282 + chr3L 8609187 intron CG6282 + chr3L_12_8605001 chr3L_8605001 RAL-161 580 chr3L 8696908 8696916 chr3L 8696961 8696989 4 62 4.5 4.0 4.2 0.8 81 chr3L 8696908 intergenic not near genes chr3L 8696948 intergenic not near genes chr3L 8696989 intergenic not near genes chr3L_4_8695001 chr3L_8695001 RAL-161 581 chr3L 8741873 8741881 chr3L 8741973 8741982 6 101 3.0 4.5 3.8 1.2 109 chr3L 8741873 intron Prm - chr3L 8741928 intron Prm - chr3L 8741982 intron Prm - chr3L_6_8740001 chr3L_8740001 RAL-161 582 chr3L 8741882 8741906 chr3L 8741983 8741997 12 100 3.0 6.5 4.8 2.1 115 chr3L 8741882 intron Prm - chr3L 8741940 intron Prm - chr3L 8741997 intron Prm - chr3L_12_8740001 chr3L_8740001 RAL-161 583 chr3L 8754283 8754313 chr3L 8754365 8754395 6 82 2.0 5.0 3.5 1.3 112 chr3L 8754283 5` UTR Fhos + chr3L 8754339 5` UTR Fhos + chr3L 8754395 5` UTR Fhos + chr3L_6_8750001 chr3L_8750001 RAL-161 584 chr3L 8791272 8791299 chr3L 8796691 8796719 I-element 5 5419 4.5 2.0 3.2 1.2 5447 chr3L 8791272 exon Fhos + chr3L 8793996 intron Fhos + chr3L 8796719 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-161 585 chr3L 9019153 9019163 chr3L 9019357 9019369 4 206 5.5 2.5 4.0 0.8 216 chr3L 9019153 5` UTR Doc2 - chr3L 9019261 intergenic Doc2 - chr3L 9019369 intergenic Doc2 - chr3L_4_9015001 chr3L_9015001 RAL-161 586 chr3L 9019171 9019181 chr3L 9019356 9019389 5 197 3.0 2.5 2.8 1.3 218 chr3L 9019171 5` UTR Doc2 - chr3L 9019280 intergenic Doc2 - chr3L 9019389 intergenic Doc2 - chr3L_5_9015001 chr3L_9015001 RAL-161 587 chr3L 9076928 9076951 chr3L 9084488 9084504 412 7 7559 2.5 3.5 3.0 1.8 7576 chr3L 9076928 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084504 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-161 588 chr3L 9115248 9115274 chr3L 9115325 9115357 4 82 1.0 1.0 1.0 2.0 109 chr3L 9115248 intron bol - chr3L 9115302 intron bol - chr3L 9115357 intron bol - chr3L_4_9115001 chr3L_9115001 RAL-161 589 chr3L 9130558 9130579 chr3L 9134318 9134340 412 7 3759 4.0 6.0 5.0 1.2 3782 chr3L 9130558 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-161 590 chr3L 9219242 9219274 chr3L 9219914 9219917 jockey 13 664 5.5 3.5 4.5 2.4 675 chr3L 9219242 intergenic not near genes chr3L 9219580 intergenic not near genes chr3L 9219917 intergenic not near genes chr3L_13_9215001 chr3L_9215001 RAL-161 591 chr3L 9270617 9270651 chr3L 9278372 9278393 roo 5 7746 1.0 2.5 1.8 1.8 7776 chr3L 9270617 intron GluRIB + chr3L 9274505 intron GluRIB + chr3L 9278393 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-161 592 chr3L 9313026 9313027 chr3L 11777678 11777678 4 2464651 6.5 14.5 10.5 0.3 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_10545001 chr3L_10545001 RAL-161 593 chr3L 9369334 9369362 chr3L 9369450 9369478 4 116 1.5 2.0 1.8 1.4 144 chr3L 9369334 intron CG4452 + chr3L 9369406 intron CG4452 + chr3L 9369478 intron CG4452 + chr3L_4_9365001 chr3L_9365001 RAL-161 594 chr3L 9430905 9430937 chr3L 9430985 9431020 18 81 4.0 2.5 3.2 4.3 115 chr3L 9430905 exon MTF-1 + chr3L 9430962 exon MTF-1 + chr3L 9431020 exon MTF-1 + chr3L_18_9430001 chr3L_9430001 RAL-161 595 chr3L 9492409 9492424 chr3L 9492490 9492505 5 81 0.0 0.5 0.2 4.2 96 chr3L 9492409 intergenic CG32037 - chr3L 9492457 intergenic CG32037 - chr3L 9492505 intergenic CG32037 - chr3L_5_9490001 chr3L_9490001 RAL-161 596 chr3L 9575915 9575941 chr3L 9580993 9581019 jockey 7 5078 2.0 3.0 2.5 2.0 5104 chr3L 9575915 intron CG42673 + chr3L 9578467 intron CG42673 + chr3L 9581019 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-161 597 chr3L 9637862 9637886 chr3L 9637944 9637968 5 82 3.0 1.0 2.0 1.7 106 chr3L 9637862 intron fry - chr3L 9637915 intron fry - chr3L 9637968 intron fry - chr3L_5_9635001 chr3L_9635001 RAL-161 598 chr3L 9646468 9646485 chr3L 9646592 9646608 6 121 5.5 0.0 2.8 1.6 140 chr3L 9646468 intron,intron fry -,CG33696 + chr3L 9646538 intron,intron fry -,CG33696 + chr3L 9646608 intron,intron fry -,CG33696 + chr3L_6_9645001 chr3L_9645001 RAL-161 599 chr3L 9918879 9918892 chr3L 9918974 9918986 8 94 6.0 1.0 3.5 1.8 107 chr3L 9918879 intron CG34356 + chr3L 9918932 intron CG34356 + chr3L 9918986 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-161 600 chr3L 9929676 9929700 chr3L 9938451 9938455 roo 4 8772 1.5 3.0 2.2 1.2 8779 chr3L 9929676 intron CG34356 + chr3L 9934066 intron CG34356 + chr3L 9938455 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-161 601 chr3L 9951211 9951232 chr3L 9951292 9951318 10 81 2.0 4.5 3.2 2.4 107 chr3L 9951211 intron CG34356 + chr3L 9951264 intron CG34356 + chr3L 9951318 intron CG34356 + chr3L_10_9950001 chr3L_9950001 RAL-161 602 chr3L 10003163 10003169 chr3L 10003260 10003266 4 97 0.5 3.0 1.8 1.4 103 chr3L 10003163 intron dpr6 + chr3L 10003214 intron dpr6 + chr3L 10003266 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-161 603 chr3L 10079051 10079056 chr3L 10079296 10079301 4 245 2.5 5.5 4.0 0.8 250 chr3L 10079051 intron dpr6 + chr3L 10079176 intron dpr6 + chr3L 10079301 intron dpr6 + chr3L_4_10075001 chr3L_10075001 RAL-161 604 chr3L 10191284 10191316 chr3L 10191395 10191427 10 111 4.0 2.5 3.2 2.4 143 chr3L 10191284 intron ect - chr3L 10191356 intron ect - chr3L 10191427 intron ect - chr3L_10_10190001 chr3L_10190001 RAL-161 605 chr3L 10219777 10219801 chr3L 10220289 10220313 6 512 4.0 1.0 2.5 1.7 536 chr3L 10219777 exon CG32055 - chr3L 10220045 exon CG32055 - chr3L 10220313 intergenic CG32055 -,scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-161 606 chr3L 10414949 10414975 chr3L 10417321 10417321 Doc 4 2362 0.0 0.5 0.2 3.3 2372 chr3L 10414949 intergenic CG12362 + chr3L 10416135 intergenic not near genes chr3L 10417321 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-161 607 chr3L 10762830 10762860 chr3L 10762914 10762930 10 81 3.5 2.0 2.8 2.6 100 chr3L 10762830 intergenic not near genes chr3L 10762880 intergenic not near genes chr3L 10762930 intergenic not near genes chr3L_10_10760001 chr3L_10760001 RAL-161 608 chr3L 10913029 10913041 chr3L 10913126 10913138 6 96 11.0 4.0 7.5 0.7 109 chr3L 10913029 intergenic not near genes chr3L 10913084 intergenic not near genes chr3L 10913138 intergenic not near genes chr3L_6_10910001 chr3L_10910001 RAL-161 609 chr3L 10937852 10937874 chr3L 10937926 10937951 7 77 3.0 2.5 2.8 1.8 99 chr3L 10937852 intergenic not near genes chr3L 10937902 intergenic not near genes chr3L 10937951 intergenic not near genes chr3L_7_10935001 chr3L_10935001 RAL-161 610 chr3L 11087062 11087085 chr3L 11088850 11088874 S-element 5 1788 0.0 2.0 1.0 2.5 1812 chr3L 11087062 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088874 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-161 611 chr3L 11105314 11105328 chr3L 11107024 11107039 X-element 6 1710 0.5 3.0 1.8 2.1 1725 chr3L 11105314 intergenic not near genes chr3L 11106176 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-161 612 chr3L 11249859 11249882 chr3L 11249942 11249965 7 83 0.5 1.5 1.0 3.5 106 chr3L 11249859 5` UTR CR44717 + chr3L 11249912 5` UTR CR44717 + chr3L 11249965 5` UTR CR44717 + chr3L_7_11245001 chr3L_11245001 RAL-161 613 chr3L 11329709 11329716 chr3L 11332893 11332895 jockey 6 3192 5.0 3.5 4.2 1.2 3186 chr3L 11329709 intergenic not near genes chr3L 11331302 intergenic not near genes chr3L 11332895 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-161 614 chr3L 11360054 11360068 chr3L 11360230 11360246 4 178 3.5 4.0 3.8 0.8 192 chr3L 11360054 intergenic not near genes chr3L 11360150 intergenic not near genes chr3L 11360246 intergenic not near genes chr3L_4_11360001 chr3L_11360001 RAL-161 615 chr3L 11360070 11360074 chr3L 11360219 11360250 5 166 3.0 3.0 3.0 1.2 180 chr3L 11360070 intergenic not near genes chr3L 11360160 intergenic not near genes chr3L 11360250 intergenic not near genes chr3L_5_11360001 chr3L_11360001 RAL-161 616 chr3L 11564790 11564813 chr3L 11572407 11572438 412 8 7618 5.5 2.0 3.8 1.7 7648 chr3L 11564790 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_8_11565001 chr3L_11565001 RAL-161 617 chr3L 11744014 11744040 chr3L 11744122 11744148 7 108 3.0 0.0 1.5 2.8 134 chr3L 11744014 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-161 618 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 3.0 14.5 8.8 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-161 619 chr3L 9313026 9313027 chr3L 11777678 11777678 6 2464652 6.5 14.5 10.5 0.5 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_10545001 chr3L_10545001 RAL-161 620 chr3L 11846406 11846420 chr3L 11846514 11846528 5 108 0.0 1.5 0.8 2.8 122 chr3L 11846406 intergenic not near genes chr3L 11846467 intergenic not near genes chr3L 11846528 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-161 621 chr3L 11864576 11864582 chr3L 11865857 11865877 pogo 4 1291 3.5 2.0 2.8 1.1 1301 chr3L 11864576 intron CG44837 - chr3L 11865226 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-161 622 chr3L 12013911 12013938 chr3L 12014002 12014028 4 91 1.5 3.5 2.5 1.1 117 chr3L 12013911 intron rols - chr3L 12013970 intron rols - chr3L 12014028 intron rols - chr3L_4_12010001 chr3L_12010001 RAL-161 623 chr3L 12052705 12052735 chr3L 12052794 12052824 5 89 1.0 0.5 0.8 2.8 119 chr3L 12052705 intron rols - chr3L 12052764 intron rols - chr3L 12052824 intron rols - chr3L_5_12050001 chr3L_12050001 RAL-161 624 chr3L 12304094 12304114 chr3L 12304170 12304190 6 75 3.5 9.0 6.2 0.8 96 chr3L 12304094 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-161 625 chr3L 12364277 12364288 chr3L 12366808 12366818 4 2530 0.5 0.5 0.5 2.7 2541 chr3L 12364277 intergenic not near genes chr3L 12365548 intergenic not near genes chr3L 12366818 intergenic not near genes chr3L_4_12365001 chr3L_12365001 RAL-161 626 chr3L 12369544 12369566 chr3L 12369634 12369653 4 89 0.5 0.0 0.2 3.3 109 chr3L 12369544 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369653 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-161 627 chr3L 12467271 12467278 chr3L 12467356 12467363 4 85 0.0 1.0 0.5 2.7 92 chr3L 12467271 intron eyg - chr3L 12467317 intron eyg - chr3L 12467363 intron eyg - chr3L_4_12465001 chr3L_12465001 RAL-161 628 chr3L 12566832 12566847 chr3L 12566924 12566950 4 100 3.0 1.0 2.0 1.3 118 chr3L 12566832 intron sowah - chr3L 12566891 intron sowah - chr3L 12566950 intron sowah - chr3L_4_12565001 chr3L_12565001 RAL-161 629 chr3L 11777678 11777678 chr3L 12638619 12638625 9 860943 13.5 15.0 14.2 0.6 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_9_12205001 chr3L_12205001 RAL-161 630 chr3L 12654389 12654411 chr3L 12654464 12654491 6 79 0.0 0.5 0.2 5.0 102 chr3L 12654389 intergenic not near genes chr3L 12654440 intergenic not near genes chr3L 12654491 intergenic not near genes chr3L_6_12650001 chr3L_12650001 RAL-161 631 chr3L 13008816 13008827 chr3L 13008968 13008985 5 157 1.5 7.5 4.5 0.9 169 chr3L 13008816 exon CG14117 + chr3L 13008900 intron CG14117 + chr3L 13008985 exon CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-161 632 chr3L 13245098 13245105 chr3L 13245230 13245237 4 131 3.0 1.0 2.0 1.3 139 chr3L 13245098 intron caps + chr3L 13245168 intron caps + chr3L 13245237 intron caps + chr3L_4_13245001 chr3L_13245001 RAL-161 633 chr3L 13319809 13319841 chr3L 13320200 13320206 10 388 2.5 3.5 3.0 2.5 397 chr3L 13319809 intergenic not near genes chr3L 13320008 intergenic not near genes chr3L 13320206 intergenic not near genes chr3L_10_13320001 chr3L_13320001 RAL-161 634 chr3L 13432293 13432307 chr3L 13432392 13432406 5 99 2.5 4.0 3.2 1.2 113 chr3L 13432293 intron CG10713 - chr3L 13432350 intron CG10713 - chr3L 13432406 intron CG10713 - chr3L_5_13430001 chr3L_13430001 RAL-161 635 chr3L 13525161 13525174 chr3L 13532957 13532970 roo 5 7796 1.0 1.5 1.2 2.3 7809 chr3L 13525161 intergenic not near genes chr3L 13529066 intergenic not near genes chr3L 13532970 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-161 636 chr3L 13525178 13525190 chr3L 13532955 13532986 roo 5 7787 0.5 1.5 1.0 2.5 7808 chr3L 13525178 intergenic not near genes chr3L 13529082 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-161 637 chr3L 13598216 13598227 chr3L 13598293 13598297 4 73 4.5 0.5 2.5 1.1 81 chr3L 13598216 intron bru-3 - chr3L 13598256 intron bru-3 - chr3L 13598297 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-161 638 chr3L 13605332 13605366 chr3L 13605411 13605436 9 72 3.0 1.0 2.0 3.0 104 chr3L 13605332 intron bru-3 - chr3L 13605384 intron bru-3 - chr3L 13605436 intron bru-3 - chr3L_9_13605001 chr3L_13605001 RAL-161 639 chr3L 13650602 13650622 chr3L 13650681 13650701 5 79 2.0 1.0 1.5 2.0 99 chr3L 13650602 intron bru-3 - chr3L 13650652 intron bru-3 - chr3L 13650701 intron bru-3 - chr3L_5_13650001 chr3L_13650001 RAL-161 640 chr3L 13783188 13783211 chr3L 13783283 13783306 5 95 0.5 2.0 1.2 2.3 118 chr3L 13783188 intron bru-3 - chr3L 13783247 intron bru-3 - chr3L 13783306 intron bru-3 - chr3L_5_13780001 chr3L_13780001 RAL-161 641 chr3L 13957885 13957902 chr3L 13958078 13958095 5 192 1.5 2.0 1.8 1.8 210 chr3L 13957885 intron CG32137 + chr3L 13957990 intron CG32137 + chr3L 13958095 intron CG32137 + chr3L_5_13955001 chr3L_13955001 RAL-161 642 chr3L 14036686 14036696 chr3L 14036778 14036789 4 92 4.0 1.0 2.5 1.1 103 chr3L 14036686 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036738 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036789 3` UTR pncr014:3L - chr3L_4_14035001 chr3L_14035001 RAL-161 643 chr3L 14245573 14245594 chr3L 14245665 14245688 1360 10 93 6.5 2.0 4.2 1.9 115 chr3L 14245573 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_10_14245001 chr3L_14245001 RAL-161 644 chr3L 14282588 14282607 chr3L 14282668 14282687 7 79 4.5 8.0 6.2 1.0 99 chr3L 14282588 intron fz + chr3L 14282638 intron fz + chr3L 14282687 intron fz + chr3L_7_14280001 chr3L_14280001 RAL-161 645 chr3L 14295988 14296010 chr3L 14296472 14296492 roo 6 484 2.0 2.0 2.0 2.0 504 chr3L 14295988 intron fz + chr3L 14296240 intron fz + chr3L 14296492 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-161 646 chr3L 14312043 14312055 chr3L 14316849 14316869 X-element 5 4807 2.5 3.0 2.8 1.3 4826 chr3L 14312043 exon fz + chr3L 14314456 intron fz + chr3L 14316869 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-161 647 chr3L 14326968 14327000 chr3L 14327104 14327136 8 136 1.0 0.5 0.8 4.4 168 chr3L 14326968 intron fz + chr3L 14327052 intron fz + chr3L 14327136 intron fz + chr3L_8_14325001 chr3L_14325001 RAL-161 648 chr3L 14331467 14331486 chr3L 14331550 14331565 6 82 2.0 2.0 2.0 2.0 98 chr3L 14331467 intron fz + chr3L 14331516 intron fz + chr3L 14331565 intron fz + chr3L_6_14330001 chr3L_14330001 RAL-161 649 chr3L 14356519 14356552 chr3L 14356599 14356632 14 79 2.5 1.0 1.8 5.0 113 chr3L 14356519 intron fz + chr3L 14356576 intron fz + chr3L 14356632 intron fz + chr3L_14_14355001 chr3L_14355001 RAL-161 650 chr3L 14444726 14444744 chr3L 14444901 14444919 5 174 2.5 0.5 1.5 2.0 193 chr3L 14444726 intron bbg - chr3L 14444822 intron bbg - chr3L 14444919 intron bbg - chr3L_5_14440001 chr3L_14440001 RAL-161 651 chr3L 14680428 14680453 chr3L 14680528 14680554 6 101 3.0 5.5 4.2 1.2 126 chr3L 14680428 exon ome + chr3L 14680491 exon ome + chr3L 14680554 exon ome + chr3L_6_14680001 chr3L_14680001 RAL-161 652 chr3L 14721181 14721209 chr3L 14723024 14723037 Rt1c 5 1840 3.0 3.5 3.2 1.2 1856 chr3L 14721181 intron ome + chr3L 14722109 intron ome + chr3L 14723037 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-161 653 chr3L 14725202 14725231 chr3L 14725507 14725536 5 305 1.0 0.0 0.5 3.3 334 chr3L 14725202 intron ome + chr3L 14725369 intron ome + chr3L 14725536 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-161 654 chr3L 14725607 14725626 chr3L 14728601 14728620 Doc 4 2994 1.0 1.5 1.2 1.8 3013 chr3L 14725607 intron ome + chr3L 14727114 intron ome + chr3L 14728620 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-161 655 chr3L 14809418 14809444 chr3L 14809663 14809688 10 240 0.5 2.0 1.2 4.5 270 chr3L 14809418 intron CG17839 + chr3L 14809553 intron CG17839 + chr3L 14809688 intron CG17839 + chr3L_10_14805001 chr3L_14805001 RAL-161 656 chr3L 14922103 14922134 chr3L 14922211 14922224 8 106 2.5 0.0 1.2 3.6 121 chr3L 14922103 intron DCX-EMAP + chr3L 14922164 intron DCX-EMAP + chr3L 14922224 intron DCX-EMAP + chr3L_8_14920001 chr3L_14920001 RAL-161 657 chr3L 15085051 15085085 chr3L 15086217 15086250 1360 5 1163 2.0 1.5 1.8 1.8 1199 chr3L 15085051 intron cp309 - chr3L 15085650 intron cp309 - chr3L 15086250 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-161 658 chr3L 15444660 15444685 chr3L 15444746 15444779 13 91 1.5 5.0 3.2 3.1 119 chr3L 15444660 intergenic not near genes chr3L 15444720 intergenic not near genes chr3L 15444779 intergenic not near genes chr3L_13_15440001 chr3L_15440001 RAL-161 659 chr3L 15449711 15449732 chr3L 15449848 15449876 15 139 1.0 7.0 4.0 3.0 165 chr3L 15449711 intergenic not near genes chr3L 15449794 intergenic not near genes chr3L 15449876 intergenic not near genes chr3L_15_15445001 chr3L_15445001 RAL-161 660 chr3L 15883193 15883220 chr3L 15883485 15883506 4 291 1.0 2.0 1.5 1.6 313 chr3L 15883193 intron pHCl - chr3L 15883350 intron pHCl - chr3L 15883506 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-161 661 chr3L 15899238 15899259 chr3L 15899785 15899826 jockey 6 559 4.0 6.5 5.2 1.0 588 chr3L 15899238 intergenic pHCl - chr3L 15899532 intergenic not near genes chr3L 15899826 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-161 662 chr3L 16060484 16060514 chr3L 16060623 16060653 9 139 0.0 3.0 1.5 3.6 169 chr3L 16060484 intron Mbs + chr3L 16060568 intron Mbs + chr3L 16060653 intron Mbs + chr3L_9_16060001 chr3L_16060001 RAL-161 663 chr3L 16184108 16184137 chr3L 16188927 16188956 X-element 6 4818 0.0 1.0 0.5 4.0 4848 chr3L 16184108 intergenic not near genes chr3L 16186532 intergenic not near genes chr3L 16188956 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-161 664 chr3L 16236343 16236360 chr3L 16236458 16236475 5 115 1.0 1.0 1.0 2.5 132 chr3L 16236343 3` UTR l(3)72Dp + chr3L 16236409 3` UTR l(3)72Dp + chr3L 16236475 3` UTR l(3)72Dp + chr3L_5_16235001 chr3L_16235001 RAL-161 665 chr3L 16241897 16241928 chr3L 16241979 16242002 12 82 2.5 1.0 1.8 4.3 105 chr3L 16241897 intergenic not near genes chr3L 16241950 intergenic not near genes chr3L 16242002 intergenic not near genes chr3L_12_16240001 chr3L_16240001 RAL-161 666 chr3L 16279086 16279104 chr3L 16279167 16279185 7 81 1.0 1.5 1.2 3.2 99 chr3L 16279086 intron CG13050 - chr3L 16279136 intron CG13050 - chr3L 16279185 intron CG13050 - chr3L_7_16275001 chr3L_16275001 RAL-161 667 chr3L 16322824 16322857 chr3L 16322914 16322943 10 88 1.5 3.5 2.5 2.9 119 chr3L 16322824 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322943 intergenic not near genes chr3L_10_16320001 chr3L_16320001 RAL-161 668 chr3L 16366777 16366794 chr3L 16366912 16366937 7 140 2.5 3.5 3.0 1.8 160 chr3L 16366777 exon Cpr72Ec - chr3L 16366857 exon Cpr72Ec - chr3L 16366937 exon Cpr72Ec - chr3L_7_16365001 chr3L_16365001 RAL-161 669 chr3L 16443849 16443878 chr3L 16446187 16446218 Doc 6 2335 1.0 1.5 1.2 2.7 2369 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446218 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-161 670 chr3L 16493992 16494009 chr3L 16494509 16494526 jockey 7 516 3.5 4.0 3.8 1.5 534 chr3L 16493992 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494259 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494526 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-161 671 chr3L 16560302 16560337 chr3L 16560387 16560421 5 81 0.5 1.0 0.8 2.8 119 chr3L 16560302 intergenic not near genes chr3L 16560362 intergenic not near genes chr3L 16560421 intergenic not near genes chr3L_5_16560001 chr3L_16560001 RAL-161 672 chr3L 16561107 16561139 chr3L 16561185 16561217 11 76 2.5 0.5 1.5 4.4 110 chr3L 16561107 intergenic not near genes chr3L 16561162 intergenic not near genes chr3L 16561217 intergenic not near genes chr3L_11_16560001 chr3L_16560001 RAL-161 673 chr3L 16772494 16772509 chr3L 16772584 16772599 6 89 2.5 3.0 2.8 1.6 105 chr3L 16772494 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772599 intron Nrt + chr3L_6_16770001 chr3L_16770001 RAL-161 674 chr3L 16817883 16817909 chr3L 16818023 16818049 9 139 2.5 3.0 2.8 2.4 166 chr3L 16817883 intron,intron nudC +,CG13024 - chr3L 16817966 intron,intron nudC +,CG13024 - chr3L 16818049 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-161 675 chr3L 16861028 16861050 chr3L 16861130 16861151 5 102 2.5 2.0 2.2 1.6 123 chr3L 16861028 intron,exon Rh4 -,CG13029 + chr3L 16861090 intron,intron Rh4 -,CG13029 + chr3L 16861151 intron,intron Rh4 -,CG13029 + chr3L_5_16860001 chr3L_16860001 RAL-161 676 chr3L 16893062 16893093 chr3L 16893377 16893408 10 314 1.5 2.5 2.0 3.3 346 chr3L 16893062 intron Lmpt + chr3L 16893235 intron Lmpt + chr3L 16893408 intron Lmpt + chr3L_10_16890001 chr3L_16890001 RAL-161 677 chr3L 16945731 16945752 chr3L 16954884 16954905 roo 9 9150 7.5 0.5 4.0 1.8 9174 chr3L 16945731 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954905 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-161 678 chr3L 17085005 17085024 chr3L 17094154 17094173 roo 6 9149 1.0 0.0 0.5 4.0 9168 chr3L 17085005 intron Rbp6 - chr3L 17089589 intron Rbp6 - chr3L 17094173 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-161 679 chr3L 17120658 17120684 chr3L 17120734 17120760 5 76 1.0 1.5 1.2 2.3 102 chr3L 17120658 intron Rbp6 - chr3L 17120709 intron Rbp6 - chr3L 17120760 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-161 680 chr3L 17146954 17146967 chr3L 17151229 17151242 4 4275 12.5 14.5 13.5 0.3 4288 chr3L 17146954 intron Rbp6 - chr3L 17149098 intron Rbp6 - chr3L 17151242 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-161 681 chr3L 17146921 17146950 chr3L 17151314 17151342 4 4392 11.5 21.0 16.2 0.2 4421 chr3L 17146921 intron Rbp6 - chr3L 17149132 intron Rbp6 - chr3L 17151342 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-161 682 chr3L 17510732 17510764 chr3L 17510816 17510848 9 82 2.0 2.5 2.2 2.8 116 chr3L 17510732 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-161 683 chr3L 17516986 17517012 chr3L 17524544 17524557 412 6 7556 0.5 4.5 2.5 1.7 7571 chr3L 17516986 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524557 3` UTR CG7564 + chr3L_6_17520001 chr3L_17520001 RAL-161 684 chr3L 17646029 17646041 chr3L 17646194 17646206 4 166 16.0 18.5 17.2 0.2 177 chr3L 17646029 exon CG43085 - chr3L 17646118 exon CG43085 - chr3L 17646206 exon CG43085 - chr3L_4_17645001 chr3L_17645001 RAL-161 685 chr3L 17758032 17758041 chr3L 17758108 17758117 6 75 7.5 6.0 6.8 0.8 85 chr3L 17758032 intron,intron Adgf-A -,Msi - chr3L 17758074 intron,intron Adgf-A -,Msi - chr3L 17758117 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_6_17755001 chr3L_17755001 RAL-161 686 chr3L 17758048 17758064 chr3L 17758107 17758120 4 60 4.0 6.0 5.0 0.7 72 chr3L 17758048 intron,intron Adgf-A -,Msi - chr3L 17758084 intron,intron Adgf-A -,Msi - chr3L 17758120 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_4_17755001 chr3L_17755001 RAL-161 687 chr3L 17837625 17837655 chr3L 17837713 17837743 7 88 5.5 6.5 6.0 1.0 118 chr3L 17837625 exon Grd + chr3L 17837684 intron Grd + chr3L 17837743 exon Grd + chr3L_7_17835001 chr3L_17835001 RAL-161 688 chr3L 17896627 17896636 chr3L 17896706 17896714 4 79 1.5 3.0 2.2 1.2 87 chr3L 17896627 intergenic not near genes chr3L 17896670 intergenic not near genes chr3L 17896714 intergenic not near genes chr3L_4_17895001 chr3L_17895001 RAL-161 689 chr3L 18223168 18223185 chr3L 18223251 18223268 4 82 1.0 0.0 0.5 2.7 100 chr3L 18223168 intergenic not near genes chr3L 18223218 intergenic not near genes chr3L 18223268 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-161 690 chr3L 18239875 18239905 chr3L 18239951 18239981 5 76 2.0 0.0 1.0 2.5 106 chr3L 18239875 intergenic not near genes chr3L 18239928 intergenic not near genes chr3L 18239981 intergenic not near genes chr3L_5_18235001 chr3L_18235001 RAL-161 691 chr3L 18383448 18383470 chr3L 18383535 18383550 5 85 3.5 2.5 3.0 1.2 102 chr3L 18383448 intergenic not near genes chr3L 18383499 intergenic not near genes chr3L 18383550 intergenic not near genes chr3L_5_18380001 chr3L_18380001 RAL-161 692 chr3L 18464494 18464505 chr3L 18464579 18464591 7 84 4.0 5.0 4.5 1.3 97 chr3L 18464494 intergenic not near genes chr3L 18464542 intergenic not near genes chr3L 18464591 intergenic not near genes chr3L_7_18460001 chr3L_18460001 RAL-161 693 chr3L 18464508 18464514 chr3L 18464575 18464600 6 82 3.0 4.5 3.8 1.2 92 chr3L 18464508 intergenic not near genes chr3L 18464554 intergenic not near genes chr3L 18464600 intergenic not near genes chr3L_6_18460001 chr3L_18460001 RAL-161 694 chr3L 18546706 18546730 chr3L 18546799 18546824 6 93 2.5 1.5 2.0 2.0 118 chr3L 18546706 intergenic not near genes chr3L 18546765 intergenic not near genes chr3L 18546824 intergenic not near genes chr3L_6_18545001 chr3L_18545001 RAL-161 695 chr3L 18861766 18861771 chr3L 18861859 18861864 4 93 2.0 1.5 1.8 1.4 98 chr3L 18861766 intergenic not near genes chr3L 18861815 intergenic not near genes chr3L 18861864 intergenic not near genes chr3L_4_18860001 chr3L_18860001 RAL-161 696 chr3L 18861787 18861799 chr3L 18861858 18861865 4 81 1.0 1.5 1.2 1.8 78 chr3L 18861787 intergenic not near genes chr3L 18861826 intergenic not near genes chr3L 18861865 intergenic not near genes chr3L_4_18860001 chr3L_18860001 RAL-161 697 chr3L 18969549 18969575 chr3L 18969625 18969650 6 75 1.0 1.5 1.2 2.7 101 chr3L 18969549 intergenic not near genes chr3L 18969600 intergenic not near genes chr3L 18969650 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-161 698 chr3L 19082038 19082070 chr3L 19082138 19082172 15 101 1.5 0.5 1.0 7.5 134 chr3L 19082038 intron Mkp3 - chr3L 19082105 intron Mkp3 - chr3L 19082172 intron Mkp3 - chr3L_15_19080001 chr3L_19080001 RAL-161 699 chr3L 19115638 19115662 chr3L 19115818 19115841 BS 4 180 2.0 0.5 1.2 1.8 203 chr3L 19115638 intron CG14082 - chr3L 19115740 intron CG14082 - chr3L 19115841 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-161 700 chr3L 19117049 19117074 chr3L 19124489 19124519 mdg1 10 7445 4.5 2.5 3.5 2.2 7470 chr3L 19117049 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124519 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-161 701 chr3L 19208060 19208092 chr3L 19209431 19209457 Doc 15 1371 1.5 3.0 2.2 4.7 1397 chr3L 19208060 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209457 intron fz2 - chr3L_15_19205001 chr3L_19205001 RAL-161 702 chr3L 19231167 19231191 chr3L 19231244 19231258 10 74 1.5 2.0 1.8 3.6 91 chr3L 19231167 intron fz2 - chr3L 19231212 intron fz2 - chr3L 19231258 intron fz2 - chr3L_10_19230001 chr3L_19230001 RAL-161 703 chr3L 19369847 19369871 chr3L 19369929 19369953 4 82 0.0 2.5 1.2 1.8 106 chr3L 19369847 intron CG32206 - chr3L 19369900 intron CG32206 - chr3L 19369953 intron CG32206 - chr3L_4_19365001 chr3L_19365001 RAL-161 704 chr3L 19426749 19426769 chr3L 19426827 19426839 5 76 6.5 4.0 5.2 0.8 90 chr3L 19426749 intergenic not near genes chr3L 19426794 intergenic not near genes chr3L 19426839 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-161 705 chr3L 19527926 19527950 chr3L 19528004 19528028 6 76 2.5 1.5 2.0 2.0 102 chr3L 19527926 intergenic not near genes chr3L 19527977 intergenic not near genes chr3L 19528028 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-161 706 chr3L 19703864 19703872 chr3L 19704018 19704025 4 153 2.5 4.5 3.5 0.9 161 chr3L 19703864 intron serp - chr3L 19703944 intron serp - chr3L 19704025 intron serp - chr3L_4_19700001 chr3L_19700001 RAL-161 707 chr3L 19820128 19820141 chr3L 19827921 19827933 412 4 7792 1.0 1.0 1.0 2.0 7805 chr3L 19820128 intron Deaf1 + chr3L 19824030 intron Deaf1 + chr3L 19827933 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 RAL-161 708 chr3L 19848524 19848533 chr3L 19857714 19857723 roo 4 9190 2.0 4.0 3.0 1.0 9199 chr3L 19848524 intron Papss + chr3L 19853124 intron Papss + chr3L 19857723 intron Papss + chr3L_4_19850001 chr3L_19850001 RAL-161 709 chr3L 20143079 20143107 chr3L 20143159 20143187 4 80 2.5 1.5 2.0 1.3 108 chr3L 20143079 intergenic not near genes chr3L 20143133 intergenic not near genes chr3L 20143187 intergenic not near genes chr3L_4_20140001 chr3L_20140001 RAL-161 710 chr3L 20177251 20177273 chr3L 20177333 20177362 15 85 1.5 3.0 2.2 4.7 111 chr3L 20177251 intron CG42674 - chr3L 20177306 intron CG42674 - chr3L 20177362 intron CG42674 - chr3L_15_20175001 chr3L_20175001 RAL-161 711 chr3L 20257345 20257359 chr3L 20258465 20258475 pogo 7 1119 0.5 4.0 2.2 2.2 1130 chr3L 20257345 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258475 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-161 712 chr3L 20290313 20290345 chr3L 20290398 20290430 13 84 2.0 2.5 2.2 4.1 117 chr3L 20290313 intron gogo - chr3L 20290372 intron gogo - chr3L 20290430 intron gogo - chr3L_13_20290001 chr3L_20290001 RAL-161 713 chr3L 20680601 20680631 chr3L 20680718 20680750 8 119 3.5 3.0 3.2 1.9 149 chr3L 20680601 intergenic not near genes chr3L 20680676 intergenic not near genes chr3L 20680750 intergenic not near genes chr3L_8_20680001 chr3L_20680001 RAL-161 714 chr3L 20912165 20912202 chr3L 20912271 20912308 7 106 1.5 1.0 1.2 3.2 143 chr3L 20912165 intergenic not near genes chr3L 20912236 intergenic not near genes chr3L 20912308 intergenic not near genes chr3L_7_20910001 chr3L_20910001 RAL-161 715 chr3L 20913751 20913781 chr3L 20913830 20913863 8 81 2.5 2.5 2.5 2.3 112 chr3L 20913751 intergenic CR43930 - chr3L 20913807 intergenic CR43930 - chr3L 20913863 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-161 716 chr3L 20986760 20986785 chr3L 20986838 20986863 8 77 3.5 3.0 3.2 1.9 103 chr3L 20986760 intergenic not near genes chr3L 20986812 intergenic not near genes chr3L 20986863 intergenic not near genes chr3L_8_20985001 chr3L_20985001 RAL-161 717 chr3L 21014914 21014946 chr3L 21023394 21023423 Tirant 8 8478 4.0 2.5 3.2 1.9 8509 chr3L 21014914 intron skd - chr3L 21019168 intron skd - chr3L 21023423 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-161 718 chr3L 21082224 21082231 chr3L 21082295 21082309 4 76 0.5 4.0 2.2 1.2 85 chr3L 21082224 intron ko - chr3L 21082266 intron ko - chr3L 21082309 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-161 719 chr3L 21186049 21186086 chr3L 21186125 21186145 6 72 1.0 3.5 2.2 1.9 96 chr3L 21186049 intron CG42337 - chr3L 21186097 intron CG42337 - chr3L 21186145 intron CG42337 - chr3L_6_21185001 chr3L_21185001 RAL-161 720 chr3L 21243747 21243765 chr3L 21251310 21251324 412 6 7562 3.5 5.0 4.2 1.2 7577 chr3L 21243747 intron Eip78C + chr3L 21247536 intron Eip78C + chr3L 21251324 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-161 721 chr3L 21395139 21395178 chr3L 21395227 21395266 11 88 1.5 2.5 2.0 3.7 127 chr3L 21395139 intron rgn + chr3L 21395202 intron rgn + chr3L 21395266 intron rgn + chr3L_11_21395001 chr3L_21395001 RAL-161 722 chr3L 21406993 21407023 chr3L 21407072 21407102 5 78 1.5 2.5 2.0 1.7 109 chr3L 21406993 intron rgn + chr3L 21407048 intron rgn + chr3L 21407102 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-161 723 chr3L 21427859 21427880 chr3L 21427952 21427971 7 92 3.5 1.5 2.5 2.0 112 chr3L 21427859 intron,5` UTR barc -,CG33288 + chr3L 21427915 intron,5` UTR barc -,CG33288 + chr3L 21427971 intron,5` UTR barc -,CG33288 + chr3L_7_21425001 chr3L_21425001 RAL-161 724 chr3L 21498834 21498869 chr3L 21500469 21500505 1360 7 1633 2.0 2.0 2.0 2.3 1671 chr3L 21498834 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-161 725 chr3L 21657000 21657029 chr3L 21657090 21657119 6 92 2.5 2.0 2.2 1.9 119 chr3L 21657000 intron CG43980 + chr3L 21657060 intron CG43980 + chr3L 21657119 intron CG43980 + chr3L_6_21655001 chr3L_21655001 RAL-161 726 chr3L 21689457 21689465 chr3L 21689524 21689548 5 79 5.5 5.5 5.5 0.8 91 chr3L 21689457 intergenic not near genes chr3L 21689502 intergenic not near genes chr3L 21689548 intergenic not near genes chr3L_5_21685001 chr3L_21685001 RAL-161 727 chr3L 21742505 21742534 chr3L 21742609 21742610 7 99 2.0 0.5 1.2 3.2 105 chr3L 21742505 intergenic CG14572 + chr3L 21742558 intergenic CG14572 + chr3L 21742610 intergenic CG14572 + chr3L_7_21740001 chr3L_21740001 RAL-161 728 chr3L 21749316 21749344 chr3L 21754476 21754481 Doc 10 5156 3.5 2.5 3.0 2.5 5165 chr3L 21749316 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754481 intron Syn1 - chr3L_10_21750001 chr3L_21750001 RAL-161 729 chr3L 21799943 21799970 chr3L 21800028 21800054 8 85 1.0 3.5 2.2 2.5 111 chr3L 21799943 intergenic not near genes chr3L 21799998 intergenic not near genes chr3L 21800054 intergenic not near genes chr3L_8_21795001 chr3L_21795001 RAL-161 730 chr3L 21840841 21840868 chr3L 21840965 21840990 6 123 1.0 6.0 3.5 1.3 149 chr3L 21840841 intron P5CDh1 - chr3L 21840916 intron P5CDh1 - chr3L 21840990 intron P5CDh1 - chr3L_6_21840001 chr3L_21840001 RAL-161 731 chr3L 22130503 22130523 chr3L 22130649 22130669 6 145 0.0 1.0 0.5 4.0 166 chr3L 22130503 intergenic not near genes chr3L 22130586 intergenic not near genes chr3L 22130669 intergenic not near genes chr3L_6_22130001 chr3L_22130001 RAL-161 732 chr3L 22137659 22137688 chr3L 22137743 22137775 7 85 1.0 0.5 0.8 3.9 116 chr3L 22137659 intron olf413 + chr3L 22137717 intron olf413 + chr3L 22137775 intron olf413 + chr3L_7_22135001 chr3L_22135001 RAL-161 733 chr3L 22328060 22328091 chr3L 22328159 22328185 7 98 4.0 5.0 4.5 1.3 125 chr3L 22328060 intron Ten-m - chr3L 22328122 intron Ten-m - chr3L 22328185 intron Ten-m - chr3L_7_22325001 chr3L_22325001 RAL-161 734 chr3L 22411370 22411392 chr3L 22411446 22411469 8 73 3.5 3.5 3.5 1.8 99 chr3L 22411370 intergenic not near genes chr3L 22411420 intergenic not near genes chr3L 22411469 intergenic not near genes chr3L_8_22410001 chr3L_22410001 RAL-161 735 chr3L 22555793 22555801 chr3L 22563238 22563240 blood 4 7442 2.0 2.5 2.2 1.2 7447 chr3L 22555793 intergenic not near genes chr3L 22559516 intergenic not near genes chr3L 22563240 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-161 736 chr3L 22577621 22577648 chr3L 22582404 22582436 Doc 11 4785 1.5 6.0 3.8 2.3 4815 chr3L 22577621 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_11_22580001 chr3L_22580001 RAL-161 737 chr3L 22617198 22617215 chr3L 22624650 22624667 blood 4 7449 1.5 1.5 1.5 1.6 7469 chr3L 22617198 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-161 738 chr3L 22630745 22630770 chr3L 22630819 22630849 15 78 2.0 4.5 3.2 3.6 104 chr3L 22630745 intron CG14459 - chr3L 22630797 intron CG14459 - chr3L 22630849 intron CG14459 - chr3L_15_22630001 chr3L_22630001 RAL-161 739 chr3L 22652320 22652352 chr3L 22652458 22652490 14 138 3.0 2.0 2.5 4.0 170 chr3L 22652320 exon CG33772 - chr3L 22652405 intron CG33772 - chr3L 22652490 exon CG33772 - chr3L_14_22650001 chr3L_22650001 RAL-161 740 chr3L 22663168 22663189 chr3L 22663477 22663498 5 309 3.5 0.5 2.0 1.7 330 chr3L 22663168 intergenic not near genes chr3L 22663333 intergenic not near genes chr3L 22663498 intergenic not near genes chr3L_5_22660001 chr3L_22660001 RAL-161 741 chr3L 22701614 22701632 chr3L 22701688 22701714 5 78 2.5 1.5 2.0 1.7 100 chr3L 22701614 intergenic not near genes chr3L 22701664 intergenic not near genes chr3L 22701714 intergenic not near genes chr3L_5_22700001 chr3L_22700001 RAL-161 742 chr3L 22838584 22838618 chr3L 22838665 22838699 9 80 2.5 1.0 1.8 3.2 115 chr3L 22838584 intergenic CG11226 + chr3L 22838642 intergenic CG11226 + chr3L 22838699 intergenic not near genes chr3L_9_22835001 chr3L_22835001 RAL-161 743 chr3L 19220633 19220637 chr3L 22908066 22908066 4 3687431 20.5 10.5 15.5 0.2 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-161 744 chr3L 23449695 23449725 chr3L 23449772 23449777 12 73 4.0 3.0 3.5 2.7 82 chr3L 23449695 intergenic not near genes chr3L 23449736 intergenic not near genes chr3L 23449777 intergenic not near genes chr3L_12_23445001 chr3L_23445001 RAL-161 745 chr3L 23854074 23854100 chr3L 23854186 23854211 5 111 1.0 4.0 2.5 1.4 137 chr3L 23854074 intron CG40470 - chr3L 23854142 intron CG40470 - chr3L 23854211 intron CG40470 - chr3L_5_23850001 chr3L_23850001 RAL-161 746 chr3L 24168791 24168821 chr3L 24176119 24176148 ZAM 4 7327 6.5 7.5 7.0 0.5 7357 chr3L 24168791 intron Snap25 + chr3L 24172470 intron Snap25 + chr3L 24176148 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-161 747 chr3L 25709116 25709137 chr3L 25709190 25709196 4 72 12.0 16.0 14.0 0.3 80 chr3L 25709116 5` UTR CR45180 + chr3L 25709156 5` UTR CR45180 + chr3L 25709196 5` UTR CR45180 + chr3L_4_25705001 chr3L_25705001 RAL-161 748 chr3R 892089 892101 chr3R 892153 892182 5 77 3.0 4.5 3.8 1.0 93 chr3R 892089 intron CG42621 + chr3R 892136 intron CG42621 + chr3R 892182 intron CG42621 + chr3R_5_890001 chr3R_890001 RAL-161 749 chr3R 2534145 2534156 chr3R 2541714 2541724 4 7569 13.5 16.5 15.0 0.2 7579 chr3R 2534145 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541724 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-161 750 chr3R 2534157 2534164 chr3R 2541700 2541711 8 7554 13.0 12.0 12.5 0.6 7554 chr3R 2534157 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541711 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-161 751 chr3R 4739126 4739132 chr3R 4739202 4739209 4 76 3.5 0.5 2.0 1.3 83 chr3R 4739126 intron tacc - chr3R 4739168 intron tacc - chr3R 4739209 intron tacc - chr3R_4_4735001 chr3R_4735001 RAL-161 752 chr3R 4769158 4769191 chr3R 4769236 4769269 7 77 4.0 1.0 2.5 2.0 111 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-161 753 chr3R 4861571 4861598 chr3R 4861646 4861652 12 76 2.0 3.0 2.5 3.4 81 chr3R 4861571 intron opa + chr3R 4861612 intron opa + chr3R 4861652 intron opa + chr3R_12_4860001 chr3R_4860001 RAL-161 754 chr3R 4887483 4887512 chr3R 4894858 4894889 rover 4 7376 2.5 1.5 2.0 1.3 7406 chr3R 4887483 intergenic not near genes chr3R 4891186 intergenic not near genes chr3R 4894889 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-161 755 chr3R 4922351 4922363 chr3R 4922430 4922442 4 79 2.0 3.5 2.8 1.1 91 chr3R 4922351 intron Cdep + chr3R 4922396 intron Cdep + chr3R 4922442 intron Cdep + chr3R_4_4920001 chr3R_4920001 RAL-161 756 chr3R 4966005 4966035 chr3R 4966097 4966127 8 91 0.5 1.0 0.8 4.4 122 chr3R 4966005 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966127 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-161 757 chr3R 4984907 4984918 chr3R 4984997 4985022 10 102 1.0 3.0 2.0 3.3 115 chr3R 4984907 3` UTR CR43424 - chr3R 4984964 3` UTR CR43424 - chr3R 4985022 3` UTR CR43424 - chr3R_10_4980001 chr3R_4980001 RAL-161 758 chr3R 5067981 5068006 chr3R 5073498 5073517 mdg3 4 5512 1.5 2.0 1.8 1.4 5536 chr3R 5067981 intergenic not near genes chr3R 5070749 intergenic not near genes chr3R 5073517 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-161 759 chr3R 5170267 5170288 chr3R 5170368 5170384 5 98 2.0 0.5 1.2 2.3 117 chr3R 5170267 intergenic dpr16 + chr3R 5170326 intergenic dpr16 + chr3R 5170384 intergenic dpr16 + chr3R_5_5170001 chr3R_5170001 RAL-161 760 chr3R 5193901 5193934 chr3R 5194015 5194036 13 108 2.5 3.5 3.0 3.2 135 chr3R 5193901 intron cno - chr3R 5193968 intron cno - chr3R 5194036 intron cno - chr3R_13_5190001 chr3R_5190001 RAL-161 761 chr3R 5278089 5278123 chr3R 5278170 5278203 10 78 2.0 2.5 2.2 3.1 114 chr3R 5278089 intron mtd - chr3R 5278146 intron mtd - chr3R 5278203 intron mtd - chr3R_10_5275001 chr3R_5275001 RAL-161 762 chr3R 5338396 5338422 chr3R 5343573 5343599 Rt1c 10 5175 4.0 5.5 4.8 1.7 5203 chr3R 5338396 intron mtd - chr3R 5340998 intron mtd - chr3R 5343599 intron mtd - chr3R_10_5340001 chr3R_5340001 RAL-161 763 chr3R 5769232 5769258 chr3R 5769330 5769356 7 98 1.5 1.0 1.2 3.2 124 chr3R 5769232 intron CG2082 - chr3R 5769294 intron CG2082 - chr3R 5769356 intron CG2082 - chr3R_7_5765001 chr3R_5765001 RAL-161 764 chr3R 5772376 5772409 chr3R 5772534 5772567 6 158 0.5 0.5 0.5 4.0 191 chr3R 5772376 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-161 765 chr3R 5809116 5809145 chr3R 5809356 5809385 pogo 5 240 2.0 3.0 2.5 1.4 269 chr3R 5809116 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-161 766 chr3R 5822394 5822408 chr3R 5823561 5823574 1360 7 1166 2.5 3.0 2.8 1.8 1180 chr3R 5822394 3` UTR CG2023 - chr3R 5822984 3` UTR CG2023 - chr3R 5823574 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-161 767 chr3R 5927563 5927585 chr3R 5927803 5927825 pogo 6 237 3.0 1.5 2.2 1.9 262 chr3R 5927563 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927825 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-161 768 chr3R 5989337 5989361 chr3R 5989420 5989427 4 78 1.5 1.5 1.5 1.6 90 chr3R 5989337 5` UTR CR44927 + chr3R 5989382 5` UTR CR44927 + chr3R 5989427 5` UTR CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-161 769 chr3R 6015960 6015995 chr3R 6024441 6024476 Tirant 11 8480 3.0 4.0 3.5 2.4 8516 chr3R 6015960 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_11_6020001 chr3R_6020001 RAL-161 770 chr3R 6158524 6158540 chr3R 6167107 6167120 Tirant 4 8580 4.5 5.5 5.0 0.7 8596 chr3R 6158524 intergenic not near genes chr3R 6162822 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-161 771 chr3R 6689336 6689371 chr3R 6689418 6689444 12 81 2.0 0.0 1.0 6.0 108 chr3R 6689336 intergenic Ccp84Af - chr3R 6689390 intergenic Ccp84Af - chr3R 6689444 intergenic Ccp84Af - chr3R_12_6685001 chr3R_6685001 RAL-161 772 chr3R 6737501 6737511 chr3R 6739288 6739297 Doc 5 1787 4.0 1.5 2.8 1.3 1796 chr3R 6737501 intron pb - chr3R 6738399 intron pb - chr3R 6739297 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-161 773 chr3R 6815073 6815095 chr3R 6815155 6815177 4 82 1.5 0.5 1.0 2.0 104 chr3R 6815073 intron CR42651 - chr3R 6815125 intron CR42651 - chr3R 6815177 intron CR42651 - chr3R_4_6815001 chr3R_6815001 RAL-161 774 chr3R 6918062 6918087 chr3R 6918141 6918165 4 78 1.0 0.5 0.8 2.2 103 chr3R 6918062 intron Antp - chr3R 6918114 intron Antp - chr3R 6918165 intron Antp - chr3R_4_6915001 chr3R_6915001 RAL-161 775 chr3R 6961176 6961205 chr3R 6961253 6961284 4 78 4.5 1.5 3.0 1.0 108 chr3R 6961176 intron Antp - chr3R 6961230 intron Antp - chr3R 6961284 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-161 776 chr3R 7017598 7017624 chr3R 7017684 7017712 5 88 1.5 0.5 1.0 2.5 114 chr3R 7017598 intergenic not near genes chr3R 7017655 intergenic not near genes chr3R 7017712 intergenic not near genes chr3R_5_7015001 chr3R_7015001 RAL-161 777 chr3R 7026853 7026891 chr3R 7026939 7026977 9 84 2.5 3.0 2.8 2.4 124 chr3R 7026853 intergenic not near genes chr3R 7026915 intergenic not near genes chr3R 7026977 intergenic not near genes chr3R_9_7025001 chr3R_7025001 RAL-161 778 chr3R 7103283 7103317 chr3R 7103359 7103374 7 70 3.0 2.5 2.8 1.8 91 chr3R 7103283 intron Alh - chr3R 7103328 intron Alh - chr3R 7103374 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-161 779 chr3R 7447992 7448008 chr3R 7448070 7448086 5 77 3.0 0.5 1.8 1.8 94 chr3R 7447992 intergenic not near genes chr3R 7448039 intergenic not near genes chr3R 7448086 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-161 780 chr3R 7849667 7849675 chr3R 7850829 7850842 1360 4 1164 0.0 3.0 1.5 1.6 1175 chr3R 7849667 intron CG34384 + chr3R 7850254 intron CG34384 + chr3R 7850842 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-161 781 chr3R 7883125 7883157 chr3R 7883203 7883235 8 78 0.0 0.0 0.0 8.0 110 chr3R 7883125 intron CG17816 - chr3R 7883180 intron CG17816 - chr3R 7883235 intron CG17816 - chr3R_8_7880001 chr3R_7880001 RAL-161 782 chr3R 8056115 8056146 chr3R 8056202 8056233 6 86 4.5 2.0 3.2 1.4 118 chr3R 8056115 intergenic CG43060 + chr3R 8056174 intergenic CG43060 + chr3R 8056233 intergenic CG43060 + chr3R_6_8055001 chr3R_8055001 RAL-161 783 chr3R 8072864 8072880 chr3R 8072929 8072956 7 73 0.5 1.0 0.8 3.9 92 chr3R 8072864 intron mAChR-B + chr3R 8072910 intron mAChR-B + chr3R 8072956 intron mAChR-B + chr3R_7_8070001 chr3R_8070001 RAL-161 784 chr3R 8094414 8094431 chr3R 8099718 8099736 Transpac 5 5305 0.5 1.0 0.8 2.8 5322 chr3R 8094414 intron CG7900 + chr3R 8097075 intron CG7900 + chr3R 8099736 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-161 785 chr3R 8182653 8182668 chr3R 8182747 8182762 5 94 4.0 2.0 3.0 1.2 109 chr3R 8182653 intergenic not near genes chr3R 8182708 intergenic not near genes chr3R 8182762 intergenic not near genes chr3R_5_8180001 chr3R_8180001 RAL-161 786 chr3R 8182669 8182688 chr3R 8182744 8182782 6 91 1.5 2.0 1.8 2.1 113 chr3R 8182669 intergenic not near genes chr3R 8182726 intergenic not near genes chr3R 8182782 intergenic not near genes chr3R_6_8180001 chr3R_8180001 RAL-161 787 chr3R 8207557 8207584 chr3R 8208402 8208429 F-element 6 844 1.0 1.5 1.2 2.7 872 chr3R 8207557 intergenic not near genes chr3R 8207993 intergenic not near genes chr3R 8208429 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-161 788 chr3R 8339246 8339247 chr3R 21907534 21907536 11 13568289 12.0 29.0 20.5 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-161 789 chr3R 8403007 8403040 chr3R 8412172 8412206 roo 17 9163 2.5 4.0 3.2 4.0 9199 chr3R 8403007 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_17_8405001 chr3R_8405001 RAL-161 790 chr3R 8570500 8570510 chr3R 8575133 8575146 HMS-Beagle 4 4635 2.5 6.5 4.5 0.7 4646 chr3R 8570500 intergenic not near genes chr3R 8572823 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-161 791 chr3R 8601767 8601799 chr3R 8610920 8610951 roo 4 9152 1.5 3.0 2.2 1.2 9184 chr3R 8601767 intron 5-HT2B + chr3R 8606359 intron 5-HT2B + chr3R 8610951 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-161 792 chr3R 8617880 8617909 chr3R 8618236 8618252 6 352 2.0 2.0 2.0 2.0 372 chr3R 8617880 intron 5-HT2B + chr3R 8618066 intron 5-HT2B + chr3R 8618252 intron 5-HT2B + chr3R_6_8615001 chr3R_8615001 RAL-161 793 chr3R 8621545 8621556 chr3R 8621618 8621633 6 76 1.5 1.0 1.2 2.7 88 chr3R 8621545 intron 5-HT2B + chr3R 8621589 intron 5-HT2B + chr3R 8621633 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-161 794 chr3R 8707364 8707388 chr3R 8709805 8709829 jockey 5 2440 1.5 3.5 2.5 1.4 2465 chr3R 8707364 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709829 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-161 795 chr3R 8740245 8740274 chr3R 8740334 8740363 7 89 1.0 4.0 2.5 2.0 118 chr3R 8740245 intron CG9801 - chr3R 8740304 intron CG9801 - chr3R 8740363 intron CG9801 - chr3R_7_8740001 chr3R_8740001 RAL-161 796 chr3R 8894877 8894904 chr3R 8896033 8896060 1360 4 1156 0.0 1.0 0.5 2.7 1183 chr3R 8894877 intron pyd - chr3R 8895468 intron pyd - chr3R 8896060 intron pyd - chr3R_4_8895001 chr3R_8895001 RAL-161 797 chr3R 8971751 8971781 chr3R 8971837 8971851 9 82 1.0 3.0 2.0 3.0 100 chr3R 8971751 intergenic not near genes chr3R 8971801 intergenic not near genes chr3R 8971851 intergenic not near genes chr3R_9_8970001 chr3R_8970001 RAL-161 798 chr3R 9087316 9087345 chr3R 9087395 9087424 9 79 3.0 1.0 2.0 3.0 108 chr3R 9087316 intron pum - chr3R 9087370 intron pum - chr3R 9087424 intron pum - chr3R_9_9085001 chr3R_9085001 RAL-161 799 chr3R 9204249 9204279 chr3R 9204335 9204366 7 87 1.0 1.5 1.2 3.2 117 chr3R 9204249 intron pum - chr3R 9204308 intron pum - chr3R 9204366 intron pum - chr3R_7_9200001 chr3R_9200001 RAL-161 800 chr3R 9278779 9278788 chr3R 9284039 9284048 Rt1a 4 5260 5.0 2.5 3.8 0.8 5269 chr3R 9278779 intergenic not near genes chr3R 9281414 intergenic not near genes chr3R 9284048 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-161 801 chr3R 9350511 9350527 chr3R 9350592 9350608 5 81 0.5 3.0 1.8 1.8 97 chr3R 9350511 intron CG45050 + chr3R 9350560 intron CG45050 + chr3R 9350608 intron CG45050 + chr3R_5_9350001 chr3R_9350001 RAL-161 802 chr3R 9880175 9880196 chr3R 9883267 9883287 7 3092 19.5 7.5 13.5 0.5 3112 chr3R 9880175 intron Glut4EF + chr3R 9881731 intron Glut4EF + chr3R 9883287 intron Glut4EF + chr3R_7_9880001 chr3R_9880001 RAL-161 803 chr3R 9898789 9898802 chr3R 9898881 9898889 5 90 3.5 1.0 2.2 1.6 100 chr3R 9898789 intron Glut4EF + chr3R 9898839 intron Glut4EF + chr3R 9898889 intron Glut4EF + chr3R_5_9895001 chr3R_9895001 RAL-161 804 chr3R 10474767 10474781 chr3R 10474870 10474884 7 102 1.5 4.5 3.0 1.8 117 chr3R 10474767 intergenic not near genes chr3R 10474826 intergenic not near genes chr3R 10474884 intergenic not near genes chr3R_7_10470001 chr3R_10470001 RAL-161 805 chr3R 10492639 10492674 chr3R 10492724 10492758 9 85 2.5 2.0 2.2 2.8 119 chr3R 10492639 intergenic not near genes chr3R 10492698 intergenic not near genes chr3R 10492758 intergenic not near genes chr3R_9_10490001 chr3R_10490001 RAL-161 806 chr3R 10683550 10683586 chr3R 10683663 10683697 11 113 1.0 1.5 1.2 5.0 147 chr3R 10683550 intron CR44230 + chr3R 10683624 intron CR44230 + chr3R 10683697 5` UTR CR44230 + chr3R_11_10680001 chr3R_10680001 RAL-161 807 chr3R 10782030 10782059 chr3R 10782111 10782139 12 82 5.0 2.5 3.8 2.5 109 chr3R 10782030 exon CG42633 - chr3R 10782084 intron CG42633 - chr3R 10782139 exon CG42633 - chr3R_12_10780001 chr3R_10780001 RAL-161 808 chr3R 10919698 10919711 chr3R 10919776 10919789 5 77 2.0 0.5 1.2 2.3 91 chr3R 10919698 intergenic not near genes chr3R 10919744 intergenic not near genes chr3R 10919789 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-161 809 chr3R 11043094 11043123 chr3R 11043200 11043229 8 105 2.0 1.0 1.5 3.2 135 chr3R 11043094 intron CG34114 + chr3R 11043162 intron CG34114 + chr3R 11043229 intron CG34114 + chr3R_8_11040001 chr3R_11040001 RAL-161 810 chr3R 11085462 11085486 chr3R 11085539 11085563 6 76 0.0 2.0 1.0 3.0 101 chr3R 11085462 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085563 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-161 811 chr3R 11090848 11090877 chr3R 11090936 11090965 4 88 0.5 2.5 1.5 1.6 117 chr3R 11090848 intergenic not near genes chr3R 11090906 intergenic not near genes chr3R 11090965 intergenic not near genes chr3R_4_11090001 chr3R_11090001 RAL-161 812 chr3R 11102326 11102354 chr3R 11102407 11102421 11 79 2.0 3.0 2.5 3.1 95 chr3R 11102326 intergenic not near genes chr3R 11102374 intergenic not near genes chr3R 11102421 intergenic not near genes chr3R_11_11100001 chr3R_11100001 RAL-161 813 chr3R 11151129 11151153 chr3R 11151324 11151348 4 195 0.5 6.0 3.2 1.0 219 chr3R 11151129 3` UTR Ugt86Di - chr3R 11151238 3` UTR Ugt86Di - chr3R 11151348 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-161 814 chr3R 11197982 11198016 chr3R 11198081 11198115 7 98 0.0 2.0 1.0 3.5 133 chr3R 11197982 intron cu + chr3R 11198048 intron cu + chr3R 11198115 intron cu + chr3R_7_11195001 chr3R_11195001 RAL-161 815 chr3R 11242251 11242275 chr3R 11242340 11242364 7 88 1.5 2.5 2.0 2.3 113 chr3R 11242251 3` UTR CG17734 - chr3R 11242308 3` UTR CG17734 - chr3R 11242364 3` UTR CG17734 - chr3R_7_11240001 chr3R_11240001 RAL-161 816 chr3R 11284947 11284953 chr3R 11285031 11285035 4 83 7.5 8.0 7.8 0.5 88 chr3R 11284947 intron CR31386 - chr3R 11284991 intron CR31386 - chr3R 11285035 intron CR31386 - chr3R_4_11280001 chr3R_11280001 RAL-161 817 chr3R 11284955 11284967 chr3R 11285026 11285035 7 72 4.5 7.5 6.0 1.0 80 chr3R 11284955 intron CR31386 - chr3R 11284995 intron CR31386 - chr3R 11285035 intron CR31386 - chr3R_7_11280001 chr3R_11280001 RAL-161 818 chr3R 11307189 11307216 chr3R 11307276 11307284 10 85 4.0 4.5 4.2 1.9 95 chr3R 11307189 intergenic not near genes chr3R 11307236 intergenic not near genes chr3R 11307284 intergenic not near genes chr3R_10_11305001 chr3R_11305001 RAL-161 819 chr3R 11307217 11307221 chr3R 11307275 11307308 4 74 4.0 4.5 4.2 0.8 91 chr3R 11307217 intergenic not near genes chr3R 11307262 intergenic not near genes chr3R 11307308 intergenic not near genes chr3R_4_11305001 chr3R_11305001 RAL-161 820 chr3R 11694725 11694752 chr3R 11694817 11694845 5 93 0.0 1.5 0.8 2.8 120 chr3R 11694725 intergenic Fer3 - chr3R 11694785 intergenic Fer3 - chr3R 11694845 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-161 821 chr3R 11710205 11710236 chr3R 11710283 11710314 10 77 3.5 3.5 3.5 2.2 109 chr3R 11710205 intergenic not near genes chr3R 11710260 intergenic not near genes chr3R 11710314 intergenic not near genes chr3R_10_11710001 chr3R_11710001 RAL-161 822 chr3R 11787706 11787740 chr3R 11787874 11787908 11 166 13.0 13.5 13.2 0.8 202 chr3R 11787706 intron HisCl1 + chr3R 11787807 exon HisCl1 + chr3R 11787908 exon HisCl1 + chr3R_11_11785001 chr3R_11785001 RAL-161 823 chr3R 11834182 11834196 chr3R 11834255 11834265 4 77 2.5 5.0 3.8 0.8 83 chr3R 11834182 intron CG6959 - chr3R 11834224 intron CG6959 - chr3R 11834265 intron CG6959 - chr3R_4_11830001 chr3R_11830001 RAL-161 824 chr3R 11841062 11841083 chr3R 11846251 11846271 BS 5 5190 4.5 3.5 4.0 1.0 5209 chr3R 11841062 intron CG6959 - chr3R 11843666 intron CG6959 - chr3R 11846271 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-161 825 chr3R 12546465 12546486 chr3R 12546548 12546569 4 82 1.0 3.5 2.2 1.2 104 chr3R 12546465 intron Octbeta3R - chr3R 12546517 intron Octbeta3R - chr3R 12546569 intron Octbeta3R - chr3R_4_12545001 chr3R_12545001 RAL-161 826 chr3R 12720731 12720760 chr3R 12720897 12720928 8 168 2.5 2.0 2.2 2.5 197 chr3R 12720731 intron Men - chr3R 12720830 intron Men - chr3R 12720928 intron Men - chr3R_8_12720001 chr3R_12720001 RAL-161 827 chr3R 12725967 12725971 chr3R 12726047 12726057 4 94 2.0 1.0 1.5 1.6 90 chr3R 12725967 intergenic not near genes chr3R 12726012 intergenic not near genes chr3R 12726057 intergenic not near genes chr3R_4_12725001 chr3R_12725001 RAL-161 828 chr3R 12735799 12735812 chr3R 12735896 12735903 6 96 6.0 1.0 3.5 1.3 104 chr3R 12735799 intergenic not near genes chr3R 12735851 intergenic not near genes chr3R 12735903 intergenic not near genes chr3R_6_12735001 chr3R_12735001 RAL-161 829 chr3R 12766412 12766439 chr3R 12766496 12766505 6 80 1.0 1.0 1.0 3.0 93 chr3R 12766412 intron beat-Vc - chr3R 12766458 intron beat-Vc - chr3R 12766505 intron beat-Vc - chr3R_6_12765001 chr3R_12765001 RAL-161 830 chr3R 12825833 12825854 chr3R 12825913 12825934 5 80 3.0 6.5 4.8 0.9 101 chr3R 12825833 intergenic not near genes chr3R 12825884 intergenic not near genes chr3R 12825934 intergenic not near genes chr3R_5_12825001 chr3R_12825001 RAL-161 831 chr3R 12866489 12866512 chr3R 12866640 12866663 6 151 1.0 0.5 0.8 3.3 174 chr3R 12866489 intergenic not near genes chr3R 12866576 intergenic not near genes chr3R 12866663 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-161 832 chr3R 12883798 12883819 chr3R 12883917 12883938 4 119 2.0 5.5 3.8 0.8 140 chr3R 12883798 intergenic not near genes chr3R 12883868 intergenic not near genes chr3R 12883938 intergenic not near genes chr3R_4_12880001 chr3R_12880001 RAL-161 833 chr3R 12920151 12920174 chr3R 12925354 12925376 copia 5 5199 2.5 2.5 2.5 1.4 5225 chr3R 12920151 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925376 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-161 834 chr3R 13067837 13067859 chr3R 13067915 13067933 8 78 4.5 3.0 3.8 1.7 96 chr3R 13067837 intron sim + chr3R 13067885 intron sim + chr3R 13067933 intron sim + chr3R_8_13065001 chr3R_13065001 RAL-161 835 chr3R 13418669 13418680 chr3R 13418745 13418756 4 76 1.0 0.0 0.5 2.7 87 chr3R 13418669 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418756 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-161 836 chr3R 13606996 13607022 chr3R 13607076 13607103 5 81 0.0 2.0 1.0 2.5 107 chr3R 13606996 intergenic CG9759 - chr3R 13607050 intergenic CG9759 - chr3R 13607103 3` UTR CG9759 - chr3R_5_13605001 chr3R_13605001 RAL-161 837 chr3R 13693027 13693030 chr3R 21907534 21907534 42 8214507 4.0 29.0 16.5 2.4 8214507 chr3R 13693027 3` UTR flfl + chr3R 17800280 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_42_17800001 chr3R_17800001 RAL-161 838 chr3R 14062840 14062876 chr3R 14062917 14062953 6 76 0.5 1.0 0.8 3.3 113 chr3R 14062840 intron foxo + chr3R 14062896 intron foxo + chr3R 14062953 intron foxo + chr3R_6_14060001 chr3R_14060001 RAL-161 839 chr3R 14166680 14166691 chr3R 14167325 14167335 5 643 2.0 5.5 3.8 1.0 655 chr3R 14166680 3` UTR Dop1R1 - chr3R 14167008 3` UTR Dop1R1 - chr3R 14167335 3` UTR Dop1R1 - chr3R_5_14165001 chr3R_14165001 RAL-161 840 chr3R 14194426 14194445 chr3R 14203575 14203594 roo 4 9149 5.5 1.5 3.5 0.9 9168 chr3R 14194426 intron Dop1R1 - chr3R 14199010 intron Dop1R1 - chr3R 14203594 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-161 841 chr3R 14246395 14246414 chr3R 14247890 14247907 jockey 5 1495 5.0 3.0 4.0 1.0 1512 chr3R 14246395 intergenic not near genes chr3R 14247151 intergenic not near genes chr3R 14247907 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-161 842 chr3R 14327692 14327719 chr3R 14327774 14327801 6 82 2.0 1.0 1.5 2.4 109 chr3R 14327692 3` UTR CG3321 + chr3R 14327746 intergenic CG3321 +,spn-B + chr3R 14327801 intergenic CG3321 +,spn-B + chr3R_6_14325001 chr3R_14325001 RAL-161 843 chr3R 14346024 14346040 chr3R 14346190 14346193 11 164 3.0 5.0 4.0 2.2 169 chr3R 14346024 intron NK7.1 - chr3R 14346108 intron NK7.1 - chr3R 14346193 intron NK7.1 - chr3R_11_14345001 chr3R_14345001 RAL-161 844 chr3R 14350900 14350931 chr3R 14350976 14351007 6 76 2.0 4.5 3.2 1.4 107 chr3R 14350900 intron NK7.1 - chr3R 14350954 intron NK7.1 - chr3R 14351007 intron NK7.1 - chr3R_6_14350001 chr3R_14350001 RAL-161 845 chr3R 14469804 14469813 chr3R 14469880 14469884 4 75 6.5 4.5 5.5 0.6 80 chr3R 14469804 intron cv-c - chr3R 14469844 intron cv-c - chr3R 14469884 intron cv-c - chr3R_4_14465001 chr3R_14465001 RAL-161 846 chr3R 14497405 14497433 chr3R 14497486 14497514 6 81 2.5 0.0 1.2 2.7 109 chr3R 14497405 intron CR44177 + chr3R 14497460 intron CR44177 + chr3R 14497514 intron CR44177 + chr3R_6_14495001 chr3R_14495001 RAL-161 847 chr3R 14549807 14549831 chr3R 14549883 14549907 5 76 1.0 1.5 1.2 2.3 100 chr3R 14549807 intron Pde6 - chr3R 14549857 intron Pde6 - chr3R 14549907 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-161 848 chr3R 14617032 14617057 chr3R 14617108 14617133 6 76 1.0 1.0 1.0 3.0 101 chr3R 14617032 intron CG14853 + chr3R 14617082 intron CG14853 + chr3R 14617133 intron CG14853 + chr3R_6_14615001 chr3R_14615001 RAL-161 849 chr3R 14662333 14662337 chr3R 14662414 14662418 4 80 4.0 3.0 3.5 0.9 85 chr3R 14662333 intron Rad17 - chr3R 14662376 intron Rad17 - chr3R 14662418 exon Rad17 - chr3R_4_14660001 chr3R_14660001 RAL-161 850 chr3R 14672146 14672156 chr3R 14672304 14672319 5 161 2.5 1.5 2.0 1.7 173 chr3R 14672146 intron Meltrin - chr3R 14672232 intron Meltrin - chr3R 14672319 intron Meltrin - chr3R_5_14670001 chr3R_14670001 RAL-161 851 chr3R 14704396 14704415 chr3R 14704473 14704492 5 77 0.5 3.0 1.8 1.8 96 chr3R 14704396 intron kibra - chr3R 14704444 intron kibra - chr3R 14704492 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-161 852 chr3R 14760523 14760552 chr3R 14760614 14760643 6 90 0.0 0.5 0.2 5.0 120 chr3R 14760523 intron jvl + chr3R 14760583 intron jvl + chr3R 14760643 intron jvl + chr3R_6_14760001 chr3R_14760001 RAL-161 853 chr3R 15036544 15036564 chr3R 15036622 15036643 7 78 4.0 2.0 3.0 1.8 99 chr3R 15036544 intergenic not near genes chr3R 15036594 intergenic not near genes chr3R 15036643 intergenic not near genes chr3R_7_15035001 chr3R_15035001 RAL-161 854 chr3R 15049463 15049487 chr3R 15049586 15049613 12 126 0.5 7.5 4.0 2.4 150 chr3R 15049463 intergenic not near genes chr3R 15049538 intergenic not near genes chr3R 15049613 intergenic not near genes chr3R_12_15045001 chr3R_15045001 RAL-161 855 chr3R 15286987 15286988 chr3R 21907535 21907536 12 6620548 10.0 29.0 19.5 0.6 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_12_18595001 chr3R_18595001 RAL-161 856 chr3R 15416260 15416284 chr3R 15416338 15416364 5 77 0.0 3.5 1.8 1.8 104 chr3R 15416260 3` UTR Atx2 + chr3R 15416312 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_5_15415001 chr3R_15415001 RAL-161 857 chr3R 15517599 15517634 chr3R 15517682 15517708 10 81 2.5 1.0 1.8 3.6 109 chr3R 15517599 intergenic not near genes chr3R 15517654 intergenic not near genes chr3R 15517708 intergenic not near genes chr3R_10_15515001 chr3R_15515001 RAL-161 858 chr3R 15601167 15601181 chr3R 15608689 15608703 412 6 7522 5.0 2.0 3.5 1.3 7536 chr3R 15601167 intergenic not near genes chr3R 15604935 intergenic not near genes chr3R 15608703 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-161 859 chr3R 15892650 15892671 chr3R 15892731 15892748 5 80 2.5 1.0 1.8 1.8 98 chr3R 15892650 intron CG14877 - chr3R 15892699 intron CG14877 - chr3R 15892748 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-161 860 chr3R 15937420 15937442 chr3R 15937507 15937526 7 84 7.0 2.0 4.5 1.3 106 chr3R 15937420 intron Sap47 + chr3R 15937473 intron Sap47 + chr3R 15937526 intron Sap47 + chr3R_7_15935001 chr3R_15935001 RAL-161 861 chr3R 16333750 16334002 chr3R 16333838 16334081 11 84 1.5 1.5 1.5 4.4 331 chr3R 16333750 intron Sulf1 - chr3R 16333916 intron Sulf1 - chr3R 16334081 intron Sulf1 - chr3R_11_16330001 chr3R_16330001 RAL-161 862 chr3R 16380959 16380967 chr3R 16381211 16381240 5 257 2.5 1.5 2.0 1.7 281 chr3R 16380959 intron ss - chr3R 16381100 intron ss - chr3R 16381240 intron ss - chr3R_5_16380001 chr3R_16380001 RAL-161 863 chr3R 16472579 16472595 chr3R 16472655 16472668 9 75 9.5 8.0 8.8 0.9 89 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472624 5` UTR Gyc-89Da + chr3R 16472668 5` UTR Gyc-89Da + chr3R_9_16470001 chr3R_16470001 RAL-161 864 chr3R 16582913 16582918 chr3R 16582992 16582997 5 79 4.0 5.0 4.5 0.9 84 chr3R 16582913 intron Scp2 - chr3R 16582955 intron Scp2 - chr3R 16582997 intron Scp2 - chr3R_5_16580001 chr3R_16580001 RAL-161 865 chr3R 16756323 16756352 chr3R 16762513 16762543 diver 8 6191 3.0 2.0 2.5 2.3 6220 chr3R 16756323 intron bxd - chr3R 16759433 intron bxd - chr3R 16762543 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-161 866 chr3R 16890888 16890912 chr3R 16890970 16890975 6 79 3.0 0.5 1.8 2.1 87 chr3R 16890888 intron iab-8 - chr3R 16890932 intron iab-8 - chr3R 16890975 intron iab-8 - chr3R_6_16890001 chr3R_16890001 RAL-161 867 chr3R 17155061 17155078 chr3R 17155176 17155183 5 108 5.0 5.0 5.0 0.8 122 chr3R 17155061 exon Mur89F - chr3R 17155122 exon Mur89F - chr3R 17155183 exon Mur89F - chr3R_5_17155001 chr3R_17155001 RAL-161 868 chr3R 17346246 17346247 chr3R 21907534 21907535 4 4561288 11.5 29.0 20.2 0.2 4561289 chr3R 17346246 intron beat-IIa - chr3R 19626890 intron CG6231 - chr3R 21907535 intergenic CG6678 + chr3R_4_19625001 chr3R_19625001 RAL-161 869 chr3R 17355498 17355516 chr3R 17355576 17355594 4 78 3.5 3.0 3.2 1.0 96 chr3R 17355498 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355594 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-161 870 chr3R 17461197 17461229 chr3R 17461279 17461310 5 82 0.0 0.0 0.0 5.0 113 chr3R 17461197 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461310 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-161 871 chr3R 17521580 17521588 chr3R 17521738 17521747 4 159 0.5 8.0 4.2 0.8 167 chr3R 17521580 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521747 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-161 872 chr3R 17726239 17726267 chr3R 17726331 17726359 4 92 1.5 4.5 3.0 1.0 120 chr3R 17726239 intron Lgr1 + chr3R 17726299 intron Lgr1 + chr3R 17726359 intron Lgr1 + chr3R_4_17725001 chr3R_17725001 RAL-161 873 chr3R 17925851 17925874 chr3R 17927318 17927324 hobo 6 1463 6.5 5.0 5.8 0.9 1473 chr3R 17925851 intron cpo + chr3R 17926588 intron cpo + chr3R 17927324 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-161 874 chr3R 18032784 18032808 chr3R 18040452 18040476 opus 4 7668 0.0 0.0 0.0 4.0 7692 chr3R 18032784 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-161 875 chr3R 18235223 18235245 chr3R 18235394 18235421 4 175 1.0 0.5 0.8 2.2 198 chr3R 18235223 intergenic not near genes chr3R 18235322 intergenic not near genes chr3R 18235421 intergenic not near genes chr3R_4_18235001 chr3R_18235001 RAL-161 876 chr3R 18501599 18501623 chr3R 18501680 18501704 4 81 2.0 0.5 1.2 1.8 105 chr3R 18501599 intron fru - chr3R 18501652 intron fru - chr3R 18501704 intron fru - chr3R_4_18500001 chr3R_18500001 RAL-161 877 chr3R 18788898 18788932 chr3R 18788979 18789013 12 80 4.0 4.5 4.2 2.3 115 chr3R 18788898 intron CG7720 - chr3R 18788956 intron CG7720 - chr3R 18789013 intron CG7720 - chr3R_12_18785001 chr3R_18785001 RAL-161 878 chr3R 18791500 18791515 chr3R 18791579 18791594 4 78 1.5 4.5 3.0 1.0 94 chr3R 18791500 intron CG7720 - chr3R 18791547 intron CG7720 - chr3R 18791594 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-161 879 chr3R 18812076 18812109 chr3R 18812154 18812182 9 76 3.0 1.5 2.2 2.8 106 chr3R 18812076 intron CG18208 - chr3R 18812129 intron CG18208 - chr3R 18812182 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-161 880 chr3R 19014088 19014122 chr3R 19014168 19014198 18 78 5.0 5.0 5.0 3.0 110 chr3R 19014088 intron gukh + chr3R 19014143 intron gukh + chr3R 19014198 intron gukh + chr3R_18_19010001 chr3R_19010001 RAL-161 881 chr3R 19205612 19205634 chr3R 19205691 19205715 9 80 1.0 5.0 3.0 2.2 103 chr3R 19205612 intergenic not near genes chr3R 19205664 intergenic not near genes chr3R 19205715 intergenic not near genes chr3R_9_19205001 chr3R_19205001 RAL-161 882 chr3R 19490441 19490470 chr3R 19490530 19490559 10 88 1.5 4.0 2.8 2.6 118 chr3R 19490441 intron,intron Dys +,CG15025 - chr3R 19490500 intron,intron Dys +,CG15025 - chr3R 19490559 intron,intron Dys +,CG15025 - chr3R_10_19490001 chr3R_19490001 RAL-161 883 chr3R 19604679 19604705 chr3R 19604811 19604836 10 132 7.0 2.0 4.5 1.8 157 chr3R 19604679 exon CG7342 + chr3R 19604758 intron CG7342 + chr3R 19604836 intron CG7342 + chr3R_10_19600001 chr3R_19600001 RAL-161 884 chr3R 19717697 19717722 chr3R 19717779 19717804 4 82 2.0 5.5 3.8 0.8 107 chr3R 19717697 intergenic not near genes chr3R 19717750 intergenic not near genes chr3R 19717804 intergenic not near genes chr3R_4_19715001 chr3R_19715001 RAL-161 885 chr3R 19963767 19963794 chr3R 19963893 19963902 4 120 0.5 4.0 2.2 1.2 135 chr3R 19963767 intron Hs6st - chr3R 19963834 intron Hs6st - chr3R 19963902 intron Hs6st - chr3R_4_19960001 chr3R_19960001 RAL-161 886 chr3R 19989846 19989874 chr3R 19989926 19989937 6 73 4.5 3.5 4.0 1.2 91 chr3R 19989846 intron Hs6st - chr3R 19989892 intron Hs6st - chr3R 19989937 intron Hs6st - chr3R_6_19985001 chr3R_19985001 RAL-161 887 chr3R 20155623 20155637 chr3R 20155700 20155714 5 77 2.5 1.5 2.0 1.7 91 chr3R 20155623 intergenic not near genes chr3R 20155668 intergenic not near genes chr3R 20155714 intergenic not near genes chr3R_5_20155001 chr3R_20155001 RAL-161 888 chr3R 20195691 20195720 chr3R 20195768 20195795 5 76 1.0 3.5 2.2 1.6 104 chr3R 20195691 intergenic not near genes chr3R 20195743 intergenic not near genes chr3R 20195795 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-161 889 chr3R 20240270 20240293 chr3R 20240619 20240641 6 347 2.0 0.0 1.0 3.0 371 chr3R 20240270 intron Nlg4 + chr3R 20240456 intron Nlg4 + chr3R 20240641 intron Nlg4 + chr3R_6_20240001 chr3R_20240001 RAL-161 890 chr3R 20476227 20476236 chr3R 20476872 20476881 6 645 1.0 5.0 3.0 1.5 654 chr3R 20476227 intron Gfrl - chr3R 20476554 intron Gfrl - chr3R 20476881 intron Gfrl - chr3R_6_20475001 chr3R_20475001 RAL-161 891 chr3R 20534758 20534791 chr3R 20535131 20535154 8 365 4.0 3.0 3.5 1.8 396 chr3R 20534758 intergenic MtnE -,MtnD + chr3R 20534956 intergenic MtnD +,MtnE -,Stat92E - chr3R 20535154 exon MtnD + chr3R_8_20530001 chr3R_20530001 RAL-161 892 chr3R 20545978 20545999 chr3R 20546061 20546084 5 83 2.5 1.5 2.0 1.7 106 chr3R 20545978 intron Stat92E - chr3R 20546031 intron Stat92E - chr3R 20546084 intron Stat92E - chr3R_5_20545001 chr3R_20545001 RAL-161 893 chr3R 20594483 20594513 chr3R 20594573 20594603 6 90 1.5 0.0 0.8 3.3 120 chr3R 20594483 intron bon + chr3R 20594543 intron bon + chr3R 20594603 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-161 894 chr3R 20678059 20678086 chr3R 20678142 20678169 8 82 1.0 5.0 3.0 2.0 110 chr3R 20678059 intergenic CR43452 +,CR45024 + chr3R 20678114 intergenic CR43452 +,CR45024 + chr3R 20678169 intergenic CR43452 +,CR45024 + chr3R_8_20675001 chr3R_20675001 RAL-161 895 chr3R 20712075 20712103 chr3R 20712345 20712356 7 264 1.5 0.5 1.0 3.5 281 chr3R 20712075 intron Oamb - chr3R 20712216 intron Oamb - chr3R 20712356 intron Oamb - chr3R_7_20710001 chr3R_20710001 RAL-161 896 chr3R 20722858 20722877 chr3R 20722982 20722986 4 122 3.5 2.0 2.8 1.1 128 chr3R 20722858 intergenic not near genes chr3R 20722922 intergenic not near genes chr3R 20722986 intergenic not near genes chr3R_4_20720001 chr3R_20720001 RAL-161 897 chr3R 20867328 20867354 chr3R 20867698 20867724 6 368 4.0 3.0 3.5 1.3 396 chr3R 20867328 intergenic not near genes chr3R 20867526 intergenic not near genes chr3R 20867724 intergenic not near genes chr3R_6_20865001 chr3R_20865001 RAL-161 898 chr3R 20883346 20883370 chr3R 20883556 20883580 4 210 1.0 1.5 1.2 1.8 234 chr3R 20883346 intergenic not near genes chr3R 20883463 intergenic not near genes chr3R 20883580 intergenic not near genes chr3R_4_20880001 chr3R_20880001 RAL-161 899 chr3R 20901354 20901376 chr3R 20901431 20901458 7 81 1.0 5.0 3.0 1.8 104 chr3R 20901354 intergenic not near genes chr3R 20901406 intergenic not near genes chr3R 20901458 intergenic CG5621 + chr3R_7_20900001 chr3R_20900001 RAL-161 900 chr3R 20942821 20942840 chr3R 20942897 20942916 4 76 0.0 4.5 2.2 1.2 95 chr3R 20942821 intron CG31191 - chr3R 20942868 intron CG31191 - chr3R 20942916 intron CG31191 - chr3R_4_20940001 chr3R_20940001 RAL-161 901 chr3R 21141672 21141699 chr3R 21150153 21150180 Tirant 7 8481 5.0 2.5 3.8 1.5 8508 chr3R 21141672 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150180 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-161 902 chr3R 21163248 21163278 chr3R 21163325 21163356 7 78 0.5 2.5 1.5 2.8 108 chr3R 21163248 intron SNF4Agamma + chr3R 21163302 intron SNF4Agamma + chr3R 21163356 intron SNF4Agamma + chr3R_7_21160001 chr3R_21160001 RAL-161 903 chr3R 21422526 21422555 chr3R 21422604 21422633 7 78 2.5 4.0 3.2 1.7 107 chr3R 21422526 intron lbl - chr3R 21422580 intron lbl - chr3R 21422633 intron lbl - chr3R_7_21420001 chr3R_21420001 RAL-161 904 chr3R 21433168 21433197 chr3R 21433264 21433293 10 96 0.0 3.5 1.8 3.6 125 chr3R 21433168 intron lbl - chr3R 21433230 intron lbl - chr3R 21433293 exon lbl - chr3R_10_21430001 chr3R_21430001 RAL-161 905 chr3R 21586701 21586716 chr3R 21586975 21586990 4 274 4.5 3.5 4.0 0.8 289 chr3R 21586701 intron InR - chr3R 21586846 intron InR - chr3R 21586990 intron InR - chr3R_4_21585001 chr3R_21585001 RAL-161 906 chr3R 21600528 21600545 chr3R 21600978 21600995 5 450 3.0 1.5 2.2 1.6 467 chr3R 21600528 intron InR - chr3R 21600762 intron InR - chr3R 21600995 intron InR - chr3R_5_21600001 chr3R_21600001 RAL-161 907 chr3R 21761124 21761154 chr3R 21768516 21768522 mdg1 14 7386 5.0 6.5 5.8 2.1 7398 chr3R 21761124 exon CG42335 + chr3R 21764823 intron CG42335 + chr3R 21768522 exon CG42335 + chr3R_14_21760001 chr3R_21760001 RAL-161 908 chr3R 21784858 21784873 chr3R 21784937 21784947 5 78 0.0 4.0 2.0 1.7 89 chr3R 21784858 3` UTR,3` UTR CASK -,CRG - chr3R 21784902 3` UTR,3` UTR CASK -,CRG - chr3R 21784947 3` UTR,3` UTR CASK -,CRG - chr3R_5_21780001 chr3R_21780001 RAL-161 909 chr3R 21837657 21837663 chr3R 21838499 21838523 10 835 35.0 22.0 28.5 0.3 866 chr3R 21837657 intergenic not near genes chr3R 21838090 intergenic not near genes chr3R 21838523 intergenic not near genes chr3R_10_21835001 chr3R_21835001 RAL-161 910 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 12.0 29.0 20.5 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-161 911 chr3R 21907534 21907534 chr3R 28831801 28831802 13 6924268 29.0 14.0 21.5 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-161 912 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 12.0 29.0 20.5 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-161 913 chr3R 21907535 21907535 chr3R 28831801 28831803 25 6924267 29.0 14.0 21.5 1.1 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-161 914 chr3R 13693028 13693028 chr3R 21907536 21907536 7 8214508 4.0 29.0 16.5 0.4 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-161 915 chr3R 21907536 21907536 chr3R 28831799 28831803 37 6924266 28.0 14.5 21.2 1.7 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_37_25365001 chr3R_25365001 RAL-161 916 chr3R 21918999 21919013 chr3R 21919079 21919093 4 80 0.0 2.0 1.0 2.0 94 chr3R 21918999 intergenic not near genes chr3R 21919046 intergenic not near genes chr3R 21919093 intergenic not near genes chr3R_4_21915001 chr3R_21915001 RAL-161 917 chr3R 22055558 22055585 chr3R 22055747 22055774 5 189 1.0 3.0 2.0 1.7 216 chr3R 22055558 intron how + chr3R 22055666 intron how + chr3R 22055774 intron how + chr3R_5_22055001 chr3R_22055001 RAL-161 918 chr3R 22450544 22450576 chr3R 22453183 22453216 NOF 10 2639 1.0 4.5 2.8 2.6 2672 chr3R 22450544 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-161 919 chr3R 22507786 22507816 chr3R 22507870 22507895 9 79 3.5 1.5 2.5 2.6 109 chr3R 22507786 intron Octbeta1R + chr3R 22507840 intron Octbeta1R + chr3R 22507895 intron Octbeta1R + chr3R_9_22505001 chr3R_22505001 RAL-161 920 chr3R 22797779 22797928 chr3R 22797847 22798024 7 89 0.0 0.0 0.0 7.0 245 chr3R 22797779 intergenic not near genes chr3R 22797902 intergenic not near genes chr3R 22798024 intergenic not near genes chr3R_7_22795001 chr3R_22795001 RAL-161 921 chr3R 22804667 22804700 chr3R 22804744 22804777 7 77 1.5 2.0 1.8 2.5 110 chr3R 22804667 intron CG7031 + chr3R 22804722 intron CG7031 + chr3R 22804777 exon CG7031 + chr3R_7_22800001 chr3R_22800001 RAL-161 922 chr3R 22840815 22840849 chr3R 22841277 22841311 8 461 2.0 3.5 2.8 2.1 496 chr3R 22840815 intergenic not near genes chr3R 22841063 intergenic not near genes chr3R 22841311 intergenic not near genes chr3R_8_22840001 chr3R_22840001 RAL-161 923 chr3R 22853291 22853298 chr3R 22853368 22853375 5 77 12.5 9.0 10.8 0.4 84 chr3R 22853291 intergenic not near genes chr3R 22853333 intergenic not near genes chr3R 22853375 intergenic not near genes chr3R_5_22850001 chr3R_22850001 RAL-161 924 chr3R 22860153 22860168 chr3R 22860244 22860260 5 91 1.5 1.5 1.5 2.0 107 chr3R 22860153 intergenic not near genes chr3R 22860206 intergenic not near genes chr3R 22860260 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-161 925 chr3R 23034834 23034845 chr3R 23035247 23035252 4 411 1.0 2.5 1.8 1.4 418 chr3R 23034834 intron CG13833 - chr3R 23035043 intron CG13833 - chr3R 23035252 intron CG13833 - chr3R_4_23035001 chr3R_23035001 RAL-161 926 chr3R 23073655 23073688 chr3R 23073744 23073770 13 86 2.5 3.0 2.8 3.4 115 chr3R 23073655 intron CG13830 - chr3R 23073712 intron CG13830 - chr3R 23073770 intron CG13830 - chr3R_13_23070001 chr3R_23070001 RAL-161 927 chr3R 23114169 23114194 chr3R 23114244 23114272 5 77 0.5 0.5 0.5 3.3 103 chr3R 23114169 3` UTR Rassf - chr3R 23114220 3` UTR Rassf - chr3R 23114272 3` UTR Rassf - chr3R_5_23110001 chr3R_23110001 RAL-161 928 chr3R 23245991 23246010 chr3R 23246071 23246079 4 76 2.0 0.5 1.2 1.8 88 chr3R 23245991 intron CG4467 - chr3R 23246035 intron CG4467 - chr3R 23246079 intron CG4467 - chr3R_4_23245001 chr3R_23245001 RAL-161 929 chr3R 23363689 23363703 chr3R 23363775 23363789 5 86 1.0 3.0 2.0 1.7 100 chr3R 23363689 intergenic CG4408 - chr3R 23363739 intergenic CG4408 - chr3R 23363789 intergenic CG4408 - chr3R_5_23360001 chr3R_23360001 RAL-161 930 chr3R 23497959 23497973 chr3R 23498041 23498055 5 82 3.0 4.0 3.5 1.1 96 chr3R 23497959 intergenic not near genes chr3R 23498007 intergenic not near genes chr3R 23498055 intergenic not near genes chr3R_5_23495001 chr3R_23495001 RAL-161 931 chr3R 23549154 23549178 chr3R 23549257 23549279 10 102 3.5 2.5 3.0 2.5 125 chr3R 23549154 intergenic not near genes chr3R 23549216 intergenic not near genes chr3R 23549279 intergenic not near genes chr3R_10_23545001 chr3R_23545001 RAL-161 932 chr3R 23582803 23582829 chr3R 23582883 23582915 12 81 1.5 3.0 2.2 3.8 112 chr3R 23582803 intergenic not near genes chr3R 23582859 intergenic not near genes chr3R 23582915 intergenic not near genes chr3R_12_23580001 chr3R_23580001 RAL-161 933 chr3R 23684695 23684729 chr3R 23685180 23685182 roo 18 478 1.5 5.0 3.2 4.3 487 chr3R 23684695 exon CG18754 + chr3R 23684938 intron CG18754 + chr3R 23685182 exon CG18754 + chr3R_18_23680001 chr3R_23680001 RAL-161 934 chr3R 23688478 23688503 chr3R 23688569 23688589 6 90 2.5 4.5 3.5 1.3 111 chr3R 23688478 intergenic SPE + chr3R 23688534 intergenic SPE +,CG10254 - chr3R 23688589 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-161 935 chr3R 23733810 23733841 chr3R 23734023 23734054 11 211 4.5 1.0 2.8 2.9 244 chr3R 23733810 5` UTR Hmgcr + chr3R 23733932 intron Hmgcr + chr3R 23734054 intron Hmgcr + chr3R_11_23730001 chr3R_23730001 RAL-161 936 chr3R 23808479 23808489 chr3R 23808604 23808614 4 125 3.5 3.5 3.5 0.9 135 chr3R 23808479 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808546 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23808614 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_4_23805001 chr3R_23805001 RAL-161 937 chr3R 23820636 23820653 chr3R 23820720 23820728 6 82 4.0 1.5 2.8 1.6 92 chr3R 23820636 5` UTR CG34355 + chr3R 23820682 5` UTR CG34355 + chr3R 23820728 5` UTR CG34355 + chr3R_6_23820001 chr3R_23820001 RAL-161 938 chr3R 23868214 23868244 chr3R 23868292 23868322 15 77 4.5 4.5 4.5 2.7 108 chr3R 23868214 intron Pli - chr3R 23868268 intron Pli - chr3R 23868322 intron Pli - chr3R_15_23865001 chr3R_23865001 RAL-161 939 chr3R 24072085 24072113 chr3R 24072521 24072550 jockey 8 435 9.0 5.5 7.2 1.0 465 chr3R 24072085 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072550 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-161 940 chr3R 24207233 24207245 chr3R 24212305 24212321 flea 5 5075 3.0 2.0 2.5 1.4 5088 chr3R 24207233 intron twin - chr3R 24209777 intron twin - chr3R 24212321 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-161 941 chr3R 24434249 24434274 chr3R 24434326 24434347 4 76 0.5 1.5 1.0 2.0 98 chr3R 24434249 intron nAChRalpha1 - chr3R 24434298 intron nAChRalpha1 - chr3R 24434347 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-161 942 chr3R 24447723 24447752 chr3R 24447810 24447839 4 87 0.0 0.0 0.0 4.0 116 chr3R 24447723 intron nAChRalpha1 - chr3R 24447781 intron nAChRalpha1 - chr3R 24447839 intron nAChRalpha1 - chr3R_4_24445001 chr3R_24445001 RAL-161 943 chr3R 24502071 24502087 chr3R 24502158 24502174 5 87 2.5 4.0 3.2 1.2 103 chr3R 24502071 intergenic not near genes chr3R 24502122 intergenic not near genes chr3R 24502174 intergenic not near genes chr3R_5_24500001 chr3R_24500001 RAL-161 944 chr3R 24730088 24730112 chr3R 24732466 24732490 Doc 6 2377 5.0 0.0 2.5 1.7 2402 chr3R 24730088 intron tok + chr3R 24731289 intron tok + chr3R 24732490 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-161 945 chr3R 24927122 24927155 chr3R 24931913 24931946 Doc 4 4791 0.0 0.0 0.0 4.0 4824 chr3R 24927122 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-161 946 chr3R 24974914 24974926 chr3R 24974993 24975005 5 79 2.5 4.0 3.2 1.2 91 chr3R 24974914 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975005 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-161 947 chr3R 25018258 25018291 chr3R 25018335 25018367 9 76 1.0 3.5 2.2 2.8 109 chr3R 25018258 exon tnc + chr3R 25018312 exon tnc + chr3R 25018367 exon tnc + chr3R_9_25015001 chr3R_25015001 RAL-161 948 chr3R 25393831 25393855 chr3R 25395503 25395503 7 1667 1.5 1.0 1.2 3.2 1672 chr3R 25393831 intron Fur1 - chr3R 25394667 intron Fur1 - chr3R 25395503 intron Fur1 - chr3R_7_25390001 chr3R_25390001 RAL-161 949 chr3R 25422070 25422093 chr3R 25422151 25422174 5 81 1.5 0.5 1.0 2.5 104 chr3R 25422070 intron Fur1 - chr3R 25422122 intron Fur1 - chr3R 25422174 intron Fur1 - chr3R_5_25420001 chr3R_25420001 RAL-161 950 chr3R 25445230 25445241 chr3R 25445781 25445787 4 548 3.5 7.5 5.5 0.6 557 chr3R 25445230 intron Fur1 - chr3R 25445508 intron Fur1 - chr3R 25445787 intron Fur1 - chr3R_4_25445001 chr3R_25445001 RAL-161 951 chr3R 25464493 25464519 chr3R 25464809 25464836 9 317 1.0 3.0 2.0 3.0 343 chr3R 25464493 intron Fur1 - chr3R 25464664 intron Fur1 - chr3R 25464836 intron Fur1 - chr3R_9_25460001 chr3R_25460001 RAL-161 952 chr3R 25549914 25549939 chr3R 25550002 25550020 5 87 2.5 0.5 1.5 2.0 106 chr3R 25549914 intron msi + chr3R 25549967 intron msi + chr3R 25550020 intron msi + chr3R_5_25545001 chr3R_25545001 RAL-161 953 chr3R 25612570 25612598 chr3R 25612666 25612696 12 97 3.5 4.0 3.8 2.5 126 chr3R 25612570 intron Npl4 - chr3R 25612633 intron Npl4 - chr3R 25612696 intron Npl4 - chr3R_12_25610001 chr3R_25610001 RAL-161 954 chr3R 25615598 25615631 chr3R 25615690 25615720 8 86 2.0 4.0 3.0 2.0 122 chr3R 25615598 intron Npl4 - chr3R 25615659 intron Npl4 - chr3R 25615720 intron Npl4 - chr3R_8_25615001 chr3R_25615001 RAL-161 955 chr3R 25762942 25762966 chr3R 25763025 25763055 4 87 2.0 1.0 1.5 1.6 113 chr3R 25762942 5` UTR LpR1 - chr3R 25762998 5` UTR LpR1 - chr3R 25763055 5` UTR LpR1 - chr3R_4_25760001 chr3R_25760001 RAL-161 956 chr3R 25782020 25782047 chr3R 25782094 25782122 13 75 5.5 4.0 4.8 2.2 102 chr3R 25782020 intergenic not near genes chr3R 25782071 intergenic not near genes chr3R 25782122 intergenic not near genes chr3R_13_25780001 chr3R_25780001 RAL-161 957 chr3R 25809088 25809111 chr3R 25809243 25809268 12 156 3.0 4.0 3.5 2.7 180 chr3R 25809088 intergenic CR45652 + chr3R 25809178 intergenic CR45652 + chr3R 25809268 intergenic not near genes chr3R_12_25805001 chr3R_25805001 RAL-161 958 chr3R 25832702 25832723 chr3R 25841884 25841905 roo 8 9182 2.0 8.0 5.0 1.3 9203 chr3R 25832702 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-161 959 chr3R 25962438 25962457 chr3R 25962551 25962570 7 113 0.5 5.5 3.0 1.8 132 chr3R 25962438 intron boss + chr3R 25962504 intron boss + chr3R 25962570 intron boss + chr3R_7_25960001 chr3R_25960001 RAL-161 960 chr3R 26108827 26108851 chr3R 26117408 26117412 Tirant 6 8574 2.0 0.0 1.0 3.0 8585 chr3R 26108827 5` UTR CG31324 + chr3R 26113120 intron CG31324 + chr3R 26117412 intron CG31324 + chr3R_6_26110001 chr3R_26110001 RAL-161 961 chr3R 26294730 26294744 chr3R 26294808 26294821 4 78 0.5 0.5 0.5 2.7 91 chr3R 26294730 intergenic not near genes chr3R 26294776 intergenic not near genes chr3R 26294821 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-161 962 chr3R 26339230 26339253 chr3R 26339324 26339348 7 95 2.0 2.5 2.2 2.2 118 chr3R 26339230 intron CG33970 + chr3R 26339289 intron CG33970 + chr3R 26339348 intron CG33970 + chr3R_7_26335001 chr3R_26335001 RAL-161 963 chr3R 26376327 26376356 chr3R 26385486 26385516 roo 5 9160 1.5 0.0 0.8 2.8 9189 chr3R 26376327 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385516 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-161 964 chr3R 26387336 26387351 chr3R 26387407 26387427 7 76 3.0 2.0 2.5 2.0 91 chr3R 26387336 intergenic not near genes chr3R 26387382 intergenic not near genes chr3R 26387427 intergenic not near genes chr3R_7_26385001 chr3R_26385001 RAL-161 965 chr3R 26482369 26482392 chr3R 26482437 26482470 8 75 2.5 2.5 2.5 2.3 101 chr3R 26482369 intron plum - chr3R 26482420 intron plum - chr3R 26482470 intron plum - chr3R_8_26480001 chr3R_26480001 RAL-161 966 chr3R 26504566 26504567 chr3R 26504653 26504655 4 88 2.5 3.0 2.8 1.1 89 chr3R 26504566 intron plum - chr3R 26504610 intron plum - chr3R 26504655 intron plum - chr3R_4_26500001 chr3R_26500001 RAL-161 967 chr3R 26542046 26542074 chr3R 26542136 26542165 11 88 1.0 2.0 1.5 4.4 119 chr3R 26542046 intron scrib + chr3R 26542106 intron scrib + chr3R 26542165 intron scrib + chr3R_11_26540001 chr3R_26540001 RAL-161 968 chr3R 26558325 26558361 chr3R 26565637 26565667 Stalker4 13 7310 0.5 2.0 1.2 5.9 7342 chr3R 26558325 intron scrib + chr3R 26561996 intron scrib + chr3R 26565667 intron scrib + chr3R_13_26560001 chr3R_26560001 RAL-161 969 chr3R 26575015 26575036 chr3R 26575094 26575115 9 79 5.0 9.0 7.0 1.1 100 chr3R 26575015 exon scrib + chr3R 26575065 intron scrib + chr3R 26575115 intron scrib + chr3R_9_26575001 chr3R_26575001 RAL-161 970 chr3R 26607741 26607762 chr3R 26607816 26607838 6 75 3.5 1.0 2.2 1.9 97 chr3R 26607741 5` UTR CR44951 + chr3R 26607790 5` UTR CR44951 + chr3R 26607838 5` UTR CR44951 + chr3R_6_26605001 chr3R_26605001 RAL-161 971 chr3R 26616232 26616243 chr3R 26616321 26616331 4 89 1.0 0.0 0.5 2.7 99 chr3R 26616232 intergenic not near genes chr3R 26616282 intergenic not near genes chr3R 26616331 intergenic not near genes chr3R_4_26615001 chr3R_26615001 RAL-161 972 chr3R 26703268 26703287 chr3R 26703365 26703384 5 96 5.5 0.0 2.8 1.3 116 chr3R 26703268 intron amon - chr3R 26703326 intron amon - chr3R 26703384 intron amon - chr3R_5_26700001 chr3R_26700001 RAL-161 973 chr3R 26706121 26706155 chr3R 26706199 26706233 11 78 2.0 3.5 2.8 2.9 112 chr3R 26706121 intron amon - chr3R 26706177 intron amon - chr3R 26706233 intron amon - chr3R_11_26705001 chr3R_26705001 RAL-161 974 chr3R 26806153 26806172 chr3R 26806247 26806275 10 102 3.5 4.5 4.0 2.0 122 chr3R 26806153 intron Tl + chr3R 26806214 intron Tl + chr3R 26806275 intron Tl + chr3R_10_26805001 chr3R_26805001 RAL-161 975 chr3R 26960736 26960762 chr3R 26960825 26960850 7 86 5.0 2.5 3.8 1.5 114 chr3R 26960736 intergenic Tsp97E - chr3R 26960793 intergenic Tsp97E - chr3R 26960850 intergenic Tsp97E - chr3R_7_26960001 chr3R_26960001 RAL-161 976 chr3R 27028737 27028753 chr3R 27028815 27028832 4 79 1.5 4.0 2.8 1.1 95 chr3R 27028737 intron RYa-R + chr3R 27028784 intron RYa-R + chr3R 27028832 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-161 977 chr3R 27140523 27140543 chr3R 27148132 27148153 412 5 7608 2.0 3.5 2.8 1.3 7630 chr3R 27140523 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148153 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-161 978 chr3R 27218723 27218738 chr3R 27218813 27218828 5 90 0.0 3.5 1.8 1.8 105 chr3R 27218723 intergenic not near genes chr3R 27218776 intergenic not near genes chr3R 27218828 intergenic not near genes chr3R_5_27215001 chr3R_27215001 RAL-161 979 chr3R 27300865 27300874 chr3R 27300957 27300965 4 91 4.0 3.5 3.8 0.8 100 chr3R 27300865 intron CG3339 - chr3R 27300915 intron CG3339 - chr3R 27300965 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-161 980 chr3R 27327964 27327971 chr3R 27328282 27328289 5 319 6.0 4.0 5.0 0.8 325 chr3R 27327964 intergenic not near genes chr3R 27328126 intergenic not near genes chr3R 27328289 intergenic not near genes chr3R_5_27325001 chr3R_27325001 RAL-161 981 chr3R 27342794 27342822 chr3R 27351375 27351403 Tirant 4 8581 1.0 1.0 1.0 2.0 8609 chr3R 27342794 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351403 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-161 982 chr3R 27418705 27418715 chr3R 27418786 27418819 6 99 3.0 4.0 3.5 1.3 114 chr3R 27418705 5` UTR side - chr3R 27418762 5` UTR side - chr3R 27418819 5` UTR side - chr3R_6_27415001 chr3R_27415001 RAL-161 983 chr3R 27469758 27469792 chr3R 27469964 27469998 10 206 4.0 5.0 4.5 1.8 240 chr3R 27469758 intergenic not near genes chr3R 27469878 intergenic not near genes chr3R 27469998 intergenic not near genes chr3R_10_27465001 chr3R_27465001 RAL-161 984 chr3R 27578495 27578515 chr3R 27578578 27578603 13 86 3.0 8.5 5.8 1.9 108 chr3R 27578495 intron wdb - chr3R 27578549 intron wdb - chr3R 27578603 intron wdb - chr3R_13_27575001 chr3R_27575001 RAL-161 985 chr3R 27628040 27628067 chr3R 27628120 27628147 13 79 2.0 1.5 1.8 4.6 107 chr3R 27628040 intron Tusp + chr3R 27628094 intron Tusp + chr3R 27628147 intron Tusp + chr3R_13_27625001 chr3R_27625001 RAL-161 986 chr3R 27779275 27779287 chr3R 27779349 27779366 7 79 2.5 8.0 5.2 1.1 91 chr3R 27779275 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-161 987 chr3R 27789078 27789114 chr3R 27789155 27789191 6 77 2.0 3.5 2.8 1.6 113 chr3R 27789078 exon CG34353 - chr3R 27789134 intron CG34353 - chr3R 27789191 intron CG34353 - chr3R_6_27785001 chr3R_27785001 RAL-161 988 chr3R 27856779 27856793 chr3R 27858241 27858276 hopper2 5 1479 0.0 0.5 0.2 4.2 1497 chr3R 27856779 intron CG34353 - chr3R 27857528 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-161 989 chr3R 27875698 27875718 chr3R 27882753 27882773 297 5 7053 3.5 1.5 2.5 1.4 7075 chr3R 27875698 intron CG34353 - chr3R 27879236 intron CG34353 - chr3R 27882773 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-161 990 chr3R 28035490 28035514 chr3R 28035567 28035581 5 74 0.0 3.0 1.5 2.0 91 chr3R 28035490 intron CG34362 + chr3R 28035536 intron CG34362 + chr3R 28035581 intron CG34362 + chr3R_5_28035001 chr3R_28035001 RAL-161 991 chr3R 28068498 28068520 chr3R 28073940 28073950 I-element 5 5439 1.0 2.5 1.8 1.8 5452 chr3R 28068498 intron CG34362 + chr3R 28071224 intron CG34362 + chr3R 28073950 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-161 992 chr3R 28131426 28131454 chr3R 28131608 28131635 4 181 0.0 1.5 0.8 2.2 209 chr3R 28131426 intergenic not near genes chr3R 28131530 intergenic not near genes chr3R 28131635 intergenic not near genes chr3R_4_28130001 chr3R_28130001 RAL-161 993 chr3R 28223753 28223776 chr3R 28223843 28223865 6 90 1.5 1.0 1.2 2.7 112 chr3R 28223753 intron CG34354 + chr3R 28223809 intron CG34354 + chr3R 28223865 intron CG34354 + chr3R_6_28220001 chr3R_28220001 RAL-161 994 chr3R 28253340 28253373 chr3R 28255849 28255883 jockey 6 2510 2.5 2.0 2.2 1.9 2543 chr3R 28253340 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-161 995 chr3R 28308073 28308082 chr3R 28308150 28308159 6 76 9.5 12.5 11.0 0.5 86 chr3R 28308073 intergenic not near genes chr3R 28308116 intergenic not near genes chr3R 28308159 intergenic not near genes chr3R_6_28305001 chr3R_28305001 RAL-161 996 chr3R 28344057 28344098 chr3R 28344134 28344149 7 64 3.0 3.0 3.0 1.8 92 chr3R 28344057 exon Moca-cyp + chr3R 28344103 exon Moca-cyp + chr3R 28344149 exon Moca-cyp + chr3R_7_28340001 chr3R_28340001 RAL-161 997 chr3R 28380806 28380826 chr3R 28381029 28381052 8 226 2.0 7.0 4.5 1.5 246 chr3R 28380806 intergenic not near genes chr3R 28380929 intergenic not near genes chr3R 28381052 intergenic not near genes chr3R_8_28380001 chr3R_28380001 RAL-161 998 chr3R 28425192 28425216 chr3R 28425270 28425289 5 77 4.0 5.5 4.8 0.9 97 chr3R 28425192 intron beat-VI + chr3R 28425240 intron beat-VI + chr3R 28425289 intron beat-VI + chr3R_5_28425001 chr3R_28425001 RAL-161 999 chr3R 28478490 28478524 chr3R 28478566 28478600 12 74 1.5 2.0 1.8 4.3 110 chr3R 28478490 intergenic not near genes chr3R 28478545 intergenic not near genes chr3R 28478600 intergenic not near genes chr3R_12_28475001 chr3R_28475001 RAL-161 1000 chr3R 28599374 28599405 chr3R 28599521 28599551 6 142 1.0 1.5 1.2 2.7 177 chr3R 28599374 intergenic Noa36 - chr3R 28599462 intergenic Noa36 - chr3R 28599551 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-161 1001 chr3R 28626199 28626223 chr3R 28626299 28626323 11 99 2.5 3.0 2.8 2.9 124 chr3R 28626199 intron CG10011 - chr3R 28626261 intron CG10011 - chr3R 28626323 intron CG10011 - chr3R_11_28625001 chr3R_28625001 RAL-161 1002 chr3R 28736879 28736891 chr3R 28737097 28737109 4 218 5.5 1.5 3.5 0.9 230 chr3R 28736879 intergenic AstA-R2 - chr3R 28736994 intergenic AstA-R2 - chr3R 28737109 3` UTR AstA-R2 - chr3R_4_28735001 chr3R_28735001 RAL-161 1003 chr3R 28758289 28758302 chr3R 28763905 28763919 roo 5 5617 2.0 0.0 1.0 2.5 5630 chr3R 28758289 intergenic aqrs - chr3R 28761104 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-161 1004 chr3R 28792869 28792897 chr3R 28797964 28797990 jockey 6 5094 3.5 1.0 2.2 1.9 5121 chr3R 28792869 intergenic not near genes chr3R 28795430 intergenic not near genes chr3R 28797990 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-161 1005 chr3R 21907534 21907536 chr3R 28831799 28831802 93 6924266 28.0 14.5 21.2 4.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_93_25365001 chr3R_25365001 RAL-161 1006 chr3R 28870625 28870647 chr3R 28870708 28870730 4 82 0.0 1.0 0.5 2.7 105 chr3R 28870625 3` UTR CG33203 - chr3R 28870678 3` UTR CG33203 - chr3R 28870730 3` UTR CG33203 - chr3R_4_28870001 chr3R_28870001 RAL-161 1007 chr3R 29055944 29055975 chr3R 29056035 29056069 9 93 13.0 21.0 17.0 0.5 125 chr3R 29055944 5` UTR Sirt7 + chr3R 29056006 5` UTR Sirt7 + chr3R 29056069 5` UTR Sirt7 + chr3R_9_29055001 chr3R_29055001 RAL-161 1008 chr3R 29213060 29213090 chr3R 29213143 29213173 6 83 2.5 3.5 3.0 1.5 113 chr3R 29213060 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213173 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-161 1009 chr3R 29237270 29237281 chr3R 29239283 29239302 6 2018 15.5 3.0 9.2 0.6 2032 chr3R 29237270 exon CG11951 - chr3R 29238286 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-161 1010 chr3R 29256268 29256291 chr3R 29256348 29256371 6 80 3.0 2.0 2.5 1.7 103 chr3R 29256268 intergenic CG45544 +,stg - chr3R 29256320 intergenic CG45544 + chr3R 29256371 intergenic CG45544 + chr3R_6_29255001 chr3R_29255001 RAL-161 1011 chr3R 29264194 29264213 chr3R 29264296 29264315 4 102 0.0 2.0 1.0 2.0 121 chr3R 29264194 intergenic not near genes chr3R 29264254 intergenic not near genes chr3R 29264315 intergenic not near genes chr3R_4_29260001 chr3R_29260001 RAL-161 1012 chr3R 29351733 29351752 chr3R 29351818 29351837 7 85 4.0 2.0 3.0 1.8 104 chr3R 29351733 intergenic not near genes chr3R 29351785 intergenic not near genes chr3R 29351837 intergenic not near genes chr3R_7_29350001 chr3R_29350001 RAL-161 1013 chr3R 29406616 29406646 chr3R 29407902 29407932 jockey 11 1284 8.0 2.0 5.0 1.8 1316 chr3R 29406616 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407932 intron Ptp99A + chr3R_11_29405001 chr3R_29405001 RAL-161 1014 chr3R 29539435 29539450 chr3R 29539510 29539526 7 75 1.0 0.0 0.5 4.7 91 chr3R 29539435 intergenic not near genes chr3R 29539480 intergenic not near genes chr3R 29539526 intergenic not near genes chr3R_7_29535001 chr3R_29535001 RAL-161 1015 chr3R 29570823 29570852 chr3R 29570916 29570944 5 92 3.5 1.5 2.5 1.4 121 chr3R 29570823 intergenic not near genes chr3R 29570884 intergenic not near genes chr3R 29570944 intergenic not near genes chr3R_5_29570001 chr3R_29570001 RAL-161 1016 chr3R 29600893 29600920 chr3R 29600982 29600994 11 86 0.5 4.0 2.2 3.4 101 chr3R 29600893 intron alph + chr3R 29600944 intron alph + chr3R 29600994 intron alph + chr3R_11_29600001 chr3R_29600001 RAL-161 1017 chr3R 29655650 29655680 chr3R 29655729 29655759 4 79 1.0 0.5 0.8 2.2 109 chr3R 29655650 intron Dop1R2 - chr3R 29655704 intron Dop1R2 - chr3R 29655759 intron Dop1R2 - chr3R_4_29655001 chr3R_29655001 RAL-161 1018 chr3R 29716998 29717026 chr3R 29717072 29717102 8 74 4.5 2.0 3.2 1.9 104 chr3R 29716998 intergenic Obp99b - chr3R 29717050 intergenic Obp99b - chr3R 29717102 intergenic Obp99b - chr3R_8_29715001 chr3R_29715001 RAL-161 1019 chr3R 29738274 29738291 chr3R 29739741 29739758 hobo 4 1466 2.0 3.5 2.8 1.1 1484 chr3R 29738274 5` UTR CG1969 + chr3R 29739016 intron CG1969 + chr3R 29739758 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-161 1020 chr3R 29854832 29854860 chr3R 29854907 29854940 13 79 0.5 1.5 1.0 6.5 108 chr3R 29854832 3` UTR dgt1 - chr3R 29854886 exon dgt1 - chr3R 29854940 exon dgt1 - chr3R_13_29850001 chr3R_29850001 RAL-161 1021 chr3R 29882024 29882049 chr3R 29891181 29891206 roo 5 9157 0.5 2.5 1.5 2.0 9182 chr3R 29882024 intron CG31038 + chr3R 29886615 intron CG31038 + chr3R 29891206 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-161 1022 chr3R 29923607 29923636 chr3R 29925478 29925486 4 1859 4.5 33.0 18.8 0.2 1879 chr3R 29923607 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924546 exon Jon99Cii - chr3R 29925486 exon Jon99Ci - chr3R_4_29920001 chr3R_29920001 RAL-161 1023 chr3R 29950592 29950596 chr3R 29950652 29950673 5 68 4.0 2.0 3.0 1.2 81 chr3R 29950592 intergenic TkR99D - chr3R 29950632 intergenic TkR99D - chr3R 29950673 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-161 1024 chr3R 29968765 29968793 chr3R 29968949 29968976 5 183 1.0 0.5 0.8 2.8 211 chr3R 29968765 intron TkR99D - chr3R 29968870 intron TkR99D - chr3R 29968976 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-161 1025 chr3R 30069986 30070017 chr3R 30070089 30070100 11 101 3.5 1.0 2.2 3.4 114 chr3R 30069986 intron sima + chr3R 30070043 intron sima + chr3R 30070100 intron sima + chr3R_11_30070001 chr3R_30070001 RAL-161 1026 chr3R 30084849 30084880 chr3R 30086315 30086347 hobo 9 1465 3.5 1.5 2.5 2.6 1498 chr3R 30084849 intron sima + chr3R 30085598 intron sima + chr3R 30086347 intron sima + chr3R_9_30085001 chr3R_30085001 RAL-161 1027 chr3R 30124961 30124980 chr3R 30125037 30125038 7 71 4.5 4.5 4.5 1.3 77 chr3R 30124961 intergenic CG45073 - chr3R 30125000 intergenic CG45073 - chr3R 30125038 intergenic CG45073 - chr3R_7_30125001 chr3R_30125001 RAL-161 1028 chr3R 30203625 30203651 chr3R 30203704 30203726 4 75 1.0 5.0 3.0 1.0 101 chr3R 30203625 intergenic not near genes chr3R 30203676 intergenic not near genes chr3R 30203726 intergenic not near genes chr3R_4_30200001 chr3R_30200001 RAL-161 1029 chr3R 30396216 30396246 chr3R 30404482 30404512 roo 7 8266 1.0 1.5 1.2 3.2 8296 chr3R 30396216 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-161 1030 chr3R 30480474 30480512 chr3R 30482941 30482970 jockey 12 2464 2.0 2.0 2.0 4.0 2496 chr3R 30480474 intron PH4alphaEFB + chr3R 30481722 intron PH4alphaEFB + chr3R 30482970 intron PH4alphaEFB + chr3R_12_30480001 chr3R_30480001 RAL-161 1031 chr3R 30627603 30627638 chr3R 30627683 30627718 15 77 2.5 8.0 5.2 2.4 115 chr3R 30627603 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_15_30625001 chr3R_30625001 RAL-161 1032 chr3R 30679522 30679550 chr3R 30686991 30687019 blood 5 7469 2.0 4.0 3.0 1.2 7497 chr3R 30679522 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-161 1033 chr3R 30690161 30690191 chr3R 30690245 30690275 11 79 4.5 5.5 5.0 1.8 114 chr3R 30690161 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690275 intergenic Spn100A + chr3R_11_30690001 chr3R_30690001 RAL-161 1034 chr3R 30791906 30791940 chr3R 30792021 30792052 12 113 4.0 5.0 4.5 2.2 146 chr3R 30791906 exon wts - chr3R 30791979 intron wts - chr3R 30792052 exon wts - chr3R_12_30790001 chr3R_30790001 RAL-161 1035 chr3R 30850243 30850255 chr3R 30850335 30850347 5 92 3.5 1.5 2.5 1.4 104 chr3R 30850243 intergenic not near genes chr3R 30850295 intergenic not near genes chr3R 30850347 intergenic not near genes chr3R_5_30850001 chr3R_30850001 RAL-161 1036 chr3R 30900532 30900556 chr3R 30900599 30900614 6 73 2.5 1.0 1.8 2.1 82 chr3R 30900532 3` UTR Cyp4c3 + chr3R 30900573 3` UTR Cyp4c3 + chr3R 30900614 3` UTR Cyp4c3 + chr3R_6_30900001 chr3R_30900001 RAL-161 1037 chr3R 30977078 30977101 chr3R 30977157 30977179 4 79 1.5 1.0 1.2 1.8 101 chr3R 30977078 intron 5-HT7 - chr3R 30977128 intron 5-HT7 - chr3R 30977179 intron 5-HT7 - chr3R_4_30975001 chr3R_30975001 RAL-161 1038 chr3R 31020311 31020328 chr3R 31020485 31020496 6 173 4.5 3.5 4.0 1.2 185 chr3R 31020311 intergenic not near genes chr3R 31020404 intergenic not near genes chr3R 31020496 intergenic not near genes chr3R_6_31020001 chr3R_31020001 RAL-161 1039 chr3R 31074236 31074254 chr3R 31081834 31081852 springer 5 7598 2.5 0.5 1.5 2.0 7616 chr3R 31074236 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-161 1040 chr3R 31245625 31245642 chr3R 31245723 31245740 4 98 2.0 6.5 4.2 0.8 115 chr3R 31245625 intron qless - chr3R 31245682 intron qless - chr3R 31245740 intron qless - chr3R_4_31245001 chr3R_31245001 RAL-161 1041 chr3R 31413091 31413118 chr3R 31418291 31418297 copia 7 5197 4.5 2.0 3.2 1.7 5206 chr3R 31413091 intron Gprk2 + chr3R 31415694 intron Gprk2 + chr3R 31418297 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-161 1042 chr3R 31422545 31422558 chr3R 31422635 31422649 5 91 2.0 2.5 2.2 1.6 104 chr3R 31422545 intron Gprk2 + chr3R 31422597 intron Gprk2 + chr3R 31422649 intron Gprk2 + chr3R_5_31420001 chr3R_31420001 RAL-161 1043 chr3R 31426890 31426913 chr3R 31426982 31426998 5 89 1.5 1.5 1.5 2.0 108 chr3R 31426890 intron Gprk2 + chr3R 31426944 intron Gprk2 + chr3R 31426998 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-161 1044 chr3R 31435366 31435386 chr3R 31435517 31435538 7 152 1.0 2.5 1.8 2.5 172 chr3R 31435366 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435538 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-161 1045 chr3R 31442275 31442297 chr3R 31442360 31442382 13 84 2.0 3.5 2.8 3.4 107 chr3R 31442275 intron Gprk2 + chr3R 31442328 intron Gprk2 + chr3R 31442382 intron Gprk2 + chr3R_13_31440001 chr3R_31440001 RAL-161 1046 chr3R 31500767 31500794 chr3R 31501025 31501047 9 257 2.0 4.5 3.2 2.1 280 chr3R 31500767 intron mey + chr3R 31500907 intron mey + chr3R 31501047 intron mey + chr3R_9_31500001 chr3R_31500001 RAL-161 1047 chr3R 31691545 31691559 chr3R 31696301 31696325 Doc 7 4757 6.5 5.5 6.0 1.0 4780 chr3R 31691545 intergenic not near genes chr3R 31693935 intergenic not near genes chr3R 31696325 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-161 1048 chr3R 31819327 31819332 chr3R 31819445 31819447 4 117 3.0 2.5 2.8 1.1 120 chr3R 31819327 intron RhoGAP100F + chr3R 31819387 intron RhoGAP100F + chr3R 31819447 intron RhoGAP100F + chr3R_4_31815001 chr3R_31815001 RAL-161 1049 chr3R 31961353 31961368 chr3R 31961423 31961434 7 71 4.5 4.5 4.5 1.3 81 chr3R 31961353 intron heph - chr3R 31961394 intron heph - chr3R 31961434 intron heph - chr3R_7_31960001 chr3R_31960001 RAL-161 1050 chr3R 31997991 31998022 chr3R 32005460 32005491 blood 5 7469 1.0 0.0 0.5 3.3 7500 chr3R 31997991 intron heph - chr3R 32001741 intron heph - chr3R 32005491 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-161 1051 chr4 671610 671627 chr4 680192 680207 Tirant 5 8580 1.5 1.0 1.2 2.3 8597 chr4 671610 intron CG11360 + chr4 675908 intron CG11360 + chr4 680207 intron CG11360 + chr4_5_675001 chr4_675001 RAL-161 1052 chr4 671630 671637 chr4 680187 680204 Tirant 4 8572 1.0 1.0 1.0 2.0 8574 chr4 671630 intron CG11360 + chr4 675917 intron CG11360 + chr4 680204 intron CG11360 + chr4_4_675001 chr4_675001 RAL-161 1053 chrX 142901 142932 chrX 142994 143025 7 93 1.0 2.5 1.8 2.5 124 chrX 142901 5` UTR,3` UTR tyn +,CG17707 - chrX 142963 5` UTR,3` UTR tyn +,CG17707 - chrX 143025 5` UTR,exon tyn +,CG17707 - chrX_7_140001 chrX_140001 RAL-161 1054 chrX 201037 201055 chrX 201114 201132 4 76 1.5 1.5 1.5 1.6 95 chrX 201037 intergenic not near genes chrX 201084 intergenic not near genes chrX 201132 intergenic not near genes chrX_4_200001 chrX_200001 RAL-161 1055 chrX 440994 441014 chrX 441071 441092 5 78 4.0 3.5 3.8 1.0 98 chrX 440994 intron CG32816 - chrX 441043 intron CG32816 - chrX 441092 intron CG32816 - chrX_5_440001 chrX_440001 RAL-161 1056 chrX 551427 551455 chrX 558989 559007 412 5 7560 4.0 1.0 2.5 1.4 7580 chrX 551427 intron Appl + chrX 555217 intron Appl + chrX 559007 intron Appl + chrX_5_555001 chrX_555001 RAL-161 1057 chrX 670271 670291 chrX 670351 670364 8 78 0.0 3.5 1.8 2.9 93 chrX 670271 intergenic not near genes chrX 670318 intergenic not near genes chrX 670364 intergenic not near genes chrX_8_670001 chrX_670001 RAL-161 1058 chrX 680838 680870 chrX 680921 680953 7 81 2.0 2.5 2.2 2.2 115 chrX 680838 intergenic not near genes chrX 680896 intergenic not near genes chrX 680953 intergenic not near genes chrX_7_680001 chrX_680001 RAL-161 1059 chrX 692445 692472 chrX 693351 693378 5 906 6.5 16.5 11.5 0.4 933 chrX 692445 intron sdk + chrX 692912 intron sdk + chrX 693378 intron sdk + chrX_5_690001 chrX_690001 RAL-161 1060 chrX 706802 706822 chrX 707163 707186 5 363 0.0 3.0 1.5 2.0 384 chrX 706802 intron sdk + chrX 706994 intron sdk + chrX 707186 intron sdk + chrX_5_705001 chrX_705001 RAL-161 1061 chrX 778131 778156 chrX 778221 778246 4 87 2.5 0.5 1.5 1.6 115 chrX 778131 intron fz3 + chrX 778188 intron fz3 + chrX 778246 intron fz3 + chrX_4_775001 chrX_775001 RAL-161 1062 chrX 780593 780598 chrX 780669 780674 4 76 2.5 0.0 1.2 1.8 81 chrX 780593 intron fz3 + chrX 780634 intron fz3 + chrX 780674 intron fz3 + chrX_4_780001 chrX_780001 RAL-161 1063 chrX 806784 806804 chrX 806880 806900 8 95 4.5 1.0 2.8 2.1 116 chrX 806784 intron Sec22 + chrX 806842 intron Sec22 + chrX 806900 intron Sec22 + chrX_8_805001 chrX_805001 RAL-161 1064 chrX 827600 827622 chrX 835392 835414 roo 5 7792 5.0 0.5 2.8 1.3 7814 chrX 827600 intron CG43867 - chrX 831507 intron CG43867 - chrX 835414 intron CG43867 - chrX_5_830001 chrX_830001 RAL-161 1065 chrX 911163 911192 chrX 911242 911271 7 78 3.0 1.0 2.0 2.3 108 chrX 911163 intron CG43867 - chrX 911217 intron CG43867 - chrX 911271 intron CG43867 - chrX_7_910001 chrX_910001 RAL-161 1066 chrX 1053117 1053118 chrX 16983076 16983077 4 15929959 9.0 4.0 6.5 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-161 1067 chrX 1308115 1308147 chrX 1308199 1308231 8 82 1.0 1.5 1.2 3.6 116 chrX 1308115 intron DAAM - chrX 1308173 intron DAAM - chrX 1308231 intron DAAM - chrX_8_1305001 chrX_1305001 RAL-161 1068 chrX 1518056 1518060 chrX 1523458 1523462 jockey 4 5402 5.5 2.0 3.8 0.8 5406 chrX 1518056 intergenic inc + chrX 1520759 intergenic not near genes chrX 1523462 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-161 1069 chrX 1627973 1627997 chrX 1635441 1635462 gtwin 10 7467 3.5 4.0 3.8 2.1 7489 chrX 1627973 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635462 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-161 1070 chrX 1954894 1954916 chrX 1962829 1962836 Stalker2 7 7933 1.5 1.0 1.2 3.2 7942 chrX 1954894 intron Hr4 + chrX 1958865 intron Hr4 + chrX 1962836 intron Hr4 + chrX_7_1955001 chrX_1955001 RAL-161 1071 chrX 1974266 1974283 chrX 1974344 1974374 5 88 0.0 2.0 1.0 2.5 108 chrX 1974266 intron Hr4 + chrX 1974320 intron Hr4 + chrX 1974374 intron Hr4 + chrX_5_1970001 chrX_1970001 RAL-161 1072 chrX 2146653 2146687 chrX 2146745 2146780 5 92 1.5 2.5 2.0 1.7 127 chrX 2146653 intron Pgd + chrX 2146716 intron Pgd + chrX 2146780 intron Pgd + chrX_5_2145001 chrX_2145001 RAL-161 1073 chrX 2399843 2399867 chrX 2408195 2408197 roo 5 8346 1.5 5.0 3.2 1.2 8354 chrX 2399843 intergenic not near genes chrX 2404020 intergenic not near genes chrX 2408197 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-161 1074 chrX 2664393 2664419 chrX 2665539 2665565 1360 8 1146 0.5 1.5 1.0 4.0 1172 chrX 2664393 intron sgg + chrX 2664979 intron sgg + chrX 2665565 intron sgg + chrX_8_2660001 chrX_2660001 RAL-161 1075 chrX 2807362 2807388 chrX 2807457 2807483 4 94 1.5 1.5 1.5 1.6 121 chrX 2807362 intron kirre + chrX 2807422 intron kirre + chrX 2807483 intron kirre + chrX_4_2805001 chrX_2805001 RAL-161 1076 chrX 2918792 2918811 chrX 2918868 2918891 5 78 0.5 2.0 1.2 2.3 99 chrX 2918792 intron kirre + chrX 2918842 intron kirre + chrX 2918891 intron kirre + chrX_5_2915001 chrX_2915001 RAL-161 1077 chrX 3075639 3075661 chrX 3080939 3080967 Transpac 5 5305 1.0 3.0 2.0 1.7 5328 chrX 3075639 intron kirre + chrX 3078303 intron kirre + chrX 3080967 intron kirre + chrX_5_3075001 chrX_3075001 RAL-161 1078 chrX 3114355 3114360 chrX 3114446 3114451 5 90 0.0 0.0 0.0 5.0 96 chrX 3114355 intron kirre + chrX 3114403 intron kirre + chrX 3114451 intron kirre + chrX_5_3110001 chrX_3110001 RAL-161 1079 chrX 3408993 3409015 chrX 3409070 3409090 5 76 0.5 1.5 1.0 2.5 97 chrX 3408993 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409090 intron,intron CR44999 +,CG12535 - chrX_5_3405001 chrX_3405001 RAL-161 1080 chrX 3415016 3415051 chrX 3421201 3421235 3S18 5 6185 0.0 0.5 0.2 4.2 6219 chrX 3415016 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421235 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-161 1081 chrX 3513760 3513772 chrX 3513843 3513855 4 83 3.5 1.0 2.2 1.2 95 chrX 3513760 intron,intron CR44999 +,CG32791 - chrX 3513808 intron,intron CR44999 +,CG32791 - chrX 3513855 intron,intron CR44999 +,CG32791 - chrX_4_3510001 chrX_3510001 RAL-161 1082 chrX 3597113 3597121 chrX 3597201 3597209 4 86 0.5 1.0 0.8 2.2 96 chrX 3597113 intron AstA-R1 + chrX 3597161 intron AstA-R1 + chrX 3597209 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-161 1083 chrX 3597562 3597582 chrX 3619730 3619750 roo 6 22166 1.5 5.0 3.2 1.4 22188 chrX 3597562 intron AstA-R1 + chrX 3608656 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-161 1084 chrX 3630549 3630554 chrX 3630625 3630630 4 76 2.5 2.0 2.2 1.2 81 chrX 3630549 intron AstA-R1 + chrX 3630590 intron AstA-R1 + chrX 3630630 intron AstA-R1 + chrX_4_3630001 chrX_3630001 RAL-161 1085 chrX 3726769 3726797 chrX 3730166 3730192 NOF 5 3392 2.0 0.0 1.0 2.5 3423 chrX 3726769 intron tlk + chrX 3728480 intron tlk + chrX 3730192 intron tlk + chrX_5_3725001 chrX_3725001 RAL-161 1086 chrX 3866105 3866130 chrX 3866183 3866207 4 77 0.5 0.0 0.2 3.3 102 chrX 3866105 intron yin - chrX 3866156 intron yin - chrX 3866207 intron yin - chrX_4_3865001 chrX_3865001 RAL-161 1087 chrX 3881271 3881294 chrX 3881410 3881433 7 138 3.0 1.5 2.2 2.2 162 chrX 3881271 intron VhaAC39-1 + chrX 3881352 intron VhaAC39-1 + chrX 3881433 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-161 1088 chrX 3922132 3922156 chrX 3922407 3922431 6 275 0.0 3.0 1.5 2.4 299 chrX 3922132 intron CG42541 - chrX 3922282 intron CG42541 - chrX 3922431 intron CG42541 - chrX_6_3920001 chrX_3920001 RAL-161 1089 chrX 4165467 4165485 chrX 4165563 4165581 5 96 2.0 1.5 1.8 1.8 114 chrX 4165467 intron Fas2 - chrX 4165524 intron Fas2 - chrX 4165581 intron Fas2 - chrX_5_4165001 chrX_4165001 RAL-161 1090 chrX 4337922 4337952 chrX 4338045 4338075 7 122 1.5 1.0 1.2 3.2 153 chrX 4337922 intron norpA + chrX 4337998 intron norpA + chrX 4338075 intron norpA + chrX_7_4335001 chrX_4335001 RAL-161 1091 chrX 4717358 4717384 chrX 4717875 4717904 7 517 2.0 1.5 1.8 2.5 546 chrX 4717358 intron Proc-R + chrX 4717631 intron Proc-R + chrX 4717904 intron Proc-R + chrX_7_4715001 chrX_4715001 RAL-161 1092 chrX 4731813 4731826 chrX 4736906 4736919 jockey 6 5093 4.5 1.0 2.8 1.6 5106 chrX 4731813 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736919 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-161 1093 chrX 4763253 4763276 chrX 4763739 4763764 Stalker4 5 486 3.0 0.5 1.8 1.8 511 chrX 4763253 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763764 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-161 1094 chrX 4792395 4792406 chrX 4792828 4792839 jockey 4 433 3.5 5.0 4.2 0.8 444 chrX 4792395 intergenic not near genes chrX 4792617 intergenic not near genes chrX 4792839 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-161 1095 chrX 4961841 4961871 chrX 4962042 4962070 15 201 2.0 5.0 3.5 3.3 229 chrX 4961841 intron CR44833 - chrX 4961956 intron CR44833 - chrX 4962070 intron CR44833 - chrX_15_4960001 chrX_4960001 RAL-161 1096 chrX 5206309 5206331 chrX 5206582 5206604 7 273 0.5 1.5 1.0 3.5 295 chrX 5206309 intron,intron CG15465 +,rg + chrX 5206456 intron,intron CG15465 +,rg + chrX 5206604 intron,intron CG15465 +,rg + chrX_7_5205001 chrX_5205001 RAL-161 1097 chrX 5345403 5345429 chrX 5345514 5345540 5 111 0.5 0.5 0.5 3.3 137 chrX 5345403 intron SK + chrX 5345472 intron SK + chrX 5345540 intron SK + chrX_5_5345001 chrX_5345001 RAL-161 1098 chrX 5350302 5350314 chrX 5350411 5350422 4 109 6.0 6.0 6.0 0.6 120 chrX 5350302 intron SK + chrX 5350362 intron SK + chrX 5350422 intron SK + chrX_4_5350001 chrX_5350001 RAL-161 1099 chrX 5798863 5798889 chrX 5799025 5799051 5 162 0.5 2.5 1.5 2.0 188 chrX 5798863 intergenic not near genes chrX 5798957 intergenic not near genes chrX 5799051 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-161 1100 chrX 6118703 6118732 chrX 6118785 6118814 8 82 0.5 3.5 2.0 2.7 111 chrX 6118703 intron Ca-alpha1T - chrX 6118758 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-161 1101 chrX 6171591 6171615 chrX 6179023 6179043 Quasimodo 4 7432 0.5 1.0 0.8 2.2 7452 chrX 6171591 intron Ca-alpha1T - chrX 6175317 intron Ca-alpha1T - chrX 6179043 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-161 1102 chrX 6215346 6215366 chrX 6215429 6215449 4 83 1.0 4.5 2.8 1.1 103 chrX 6215346 intergenic not near genes chrX 6215398 intergenic not near genes chrX 6215449 intergenic not near genes chrX_4_6215001 chrX_6215001 RAL-161 1103 chrX 6335218 6335239 chrX 6337728 6337749 Tirant 6 2510 0.0 1.0 0.5 4.0 2531 chrX 6335218 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337749 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-161 1104 chrX 6392873 6392903 chrX 6397638 6397664 Doc 8 4764 4.0 1.5 2.8 2.1 4791 chrX 6392873 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397664 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-161 1105 chrX 6562818 6562828 chrX 6571299 6571307 Tirant 6 8479 7.0 3.0 5.0 1.0 8489 chrX 6562818 intron CG34417 + chrX 6567062 intron CG34417 + chrX 6571307 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-161 1106 chrX 6562835 6562851 chrX 6571298 6571318 Tirant 8 8477 2.5 3.0 2.8 2.1 8483 chrX 6562835 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571318 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-161 1107 chrX 6731636 6731664 chrX 6732065 6732093 5 429 1.5 0.0 0.8 2.8 457 chrX 6731636 intron CG3168 - chrX 6731864 intron CG3168 - chrX 6732093 intron CG3168 - chrX_5_6730001 chrX_6730001 RAL-161 1108 chrX 6737519 6737551 chrX 6737601 6737631 7 76 2.5 1.0 1.8 2.5 112 chrX 6737519 intron CG3168 - chrX 6737575 intron CG3168 - chrX 6737631 intron CG3168 - chrX_7_6735001 chrX_6735001 RAL-161 1109 chrX 6752942 6752971 chrX 6753029 6753048 4 80 1.0 0.0 0.5 2.7 106 chrX 6752942 intron CG14439 + chrX 6752995 intron CG14439 + chrX 6753048 intron CG14439 + chrX_4_6750001 chrX_6750001 RAL-161 1110 chrX 7023602 7023630 chrX 7030992 7031018 Tabor 7 7388 4.5 2.5 3.5 1.6 7416 chrX 7023602 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031018 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-161 1111 chrX 7125244 7125270 chrX 7134403 7134429 roo 7 9159 0.5 2.5 1.5 2.8 9185 chrX 7125244 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134429 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-161 1112 chrX 7650482 7650498 chrX 7650833 7650849 5 351 1.0 2.5 1.8 1.8 367 chrX 7650482 intron ct + chrX 7650666 intron ct + chrX 7650849 intron ct + chrX_5_7650001 chrX_7650001 RAL-161 1113 chrX 7679203 7679226 chrX 7681713 7681736 4 2510 3.5 10.0 6.8 0.5 2533 chrX 7679203 intergenic CR45667 -,ct + chrX 7680470 3` UTR CR45666 - chrX 7681736 intergenic CR45665 - chrX_4_7680001 chrX_7680001 RAL-161 1114 chrX 7702906 7702931 chrX 7703345 7703370 jockey 6 437 3.0 1.5 2.2 1.9 464 chrX 7702906 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703370 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-161 1115 chrX 7832438 7832465 chrX 7832527 7832554 4 89 0.0 2.0 1.0 2.0 116 chrX 7832438 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832554 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-161 1116 chrX 8536760 8536780 chrX 8536835 8536856 6 76 3.5 4.5 4.0 1.2 96 chrX 8536760 intron Nrg + chrX 8536808 intron Nrg + chrX 8536856 intron Nrg + chrX_6_8535001 chrX_8535001 RAL-161 1117 chrX 8913531 8913544 chrX 8913640 8913653 4 108 1.0 2.0 1.5 1.6 122 chrX 8913531 intron rdgA + chrX 8913592 intron rdgA + chrX 8913653 intron rdgA + chrX_4_8910001 chrX_8910001 RAL-161 1118 chrX 8922328 8922341 chrX 8922762 8922775 jockey 5 434 4.5 1.5 3.0 1.2 447 chrX 8922328 intron rdgA + chrX 8922552 intron rdgA + chrX 8922775 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-161 1119 chrX 8922353 8922363 chrX 8922757 8922797 jockey 4 426 1.0 1.5 1.2 1.8 444 chrX 8922353 intron rdgA + chrX 8922575 intron rdgA + chrX 8922797 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-161 1120 chrX 8948759 8948791 chrX 8956269 8956301 roo 5 7510 0.0 0.0 0.0 5.0 7542 chrX 8948759 intron rdgA + chrX 8952530 intron rdgA + chrX 8956301 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-161 1121 chrX 9467695 9467708 chrX 9467754 9467785 5 73 1.0 0.5 0.8 2.8 90 chrX 9467695 intron mgl - chrX 9467740 intron mgl - chrX 9467785 intron mgl - chrX_5_9465001 chrX_9465001 RAL-161 1122 chrX 9508132 9508168 chrX 9509650 9509686 jockey 8 1518 1.5 2.5 2.0 2.7 1554 chrX 9508132 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509686 intron CG32700 - chrX_8_9505001 chrX_9505001 RAL-161 1123 chrX 9575791 9575824 chrX 9576115 9576148 mdg3 6 323 3.0 4.0 3.5 1.3 357 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-161 1124 chrX 9923410 9923423 chrX 9923495 9923503 7 89 2.0 3.0 2.5 2.0 93 chrX 9923410 intergenic not near genes chrX 9923456 intergenic not near genes chrX 9923503 intergenic not near genes chrX_7_9920001 chrX_9920001 RAL-161 1125 chrX 10550854 10550883 chrX 10552321 10552350 hobo 9 1467 5.5 3.5 4.5 1.6 1496 chrX 10550854 intron spri - chrX 10551602 intron spri - chrX 10552350 intron spri - chrX_9_10550001 chrX_10550001 RAL-161 1126 chrX 10694153 10694182 chrX 10694233 10694262 6 80 1.5 2.5 2.0 2.0 109 chrX 10694153 intron X11Lbeta + chrX 10694208 intron X11Lbeta + chrX 10694262 intron X11Lbeta + chrX_6_10690001 chrX_10690001 RAL-161 1127 chrX 11291699 11291723 chrX 11291768 11291790 5 70 1.5 2.0 1.8 1.8 91 chrX 11291699 intron CG44422 - chrX 11291744 intron CG44422 - chrX 11291790 intron CG44422 - chrX_5_11290001 chrX_11290001 RAL-161 1128 chrX 11440664 11440674 chrX 11440767 11440776 4 102 0.0 0.5 0.2 3.3 112 chrX 11440664 intron Evi5 - chrX 11440720 intron Evi5 - chrX 11440776 intron Evi5 - chrX_4_11440001 chrX_11440001 RAL-161 1129 chrX 12069056 12069089 chrX 12069143 12069174 13 85 3.5 4.0 3.8 2.7 118 chrX 12069056 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069115 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069174 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_13_12065001 chrX_12065001 RAL-161 1130 chrX 12076038 12076059 chrX 12076278 12076298 6 239 6.0 2.5 4.2 1.2 260 chrX 12076038 intron,intron CR43960 +,Ten-a + chrX 12076168 intron,intron CR43960 +,Ten-a + chrX 12076298 intron,intron CR43960 +,Ten-a + chrX_6_12075001 chrX_12075001 RAL-161 1131 chrX 12094041 12094066 chrX 12094126 12094158 6 90 1.5 2.0 1.8 2.1 117 chrX 12094041 intron,intron CR43960 +,Ten-a + chrX 12094100 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_6_12090001 chrX_12090001 RAL-161 1132 chrX 12233594 12233611 chrX 12233675 12233692 4 81 2.0 1.5 1.8 1.4 98 chrX 12233594 intron Ten-a + chrX 12233643 intron Ten-a + chrX 12233692 intron Ten-a + chrX_4_12230001 chrX_12230001 RAL-161 1133 chrX 12350774 12350801 chrX 12350854 12350860 8 74 2.5 1.0 1.8 2.9 86 chrX 12350774 intergenic not near genes chrX 12350817 intergenic not near genes chrX 12350860 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-161 1134 chrX 12401089 12401110 chrX 12401247 12401267 4 159 3.5 4.5 4.0 0.8 178 chrX 12401089 intergenic not near genes chrX 12401178 intergenic not near genes chrX 12401267 intergenic not near genes chrX_4_12400001 chrX_12400001 RAL-161 1135 chrX 13006833 13006864 chrX 13006979 13007011 8 145 3.0 4.0 3.5 1.8 178 chrX 13006833 intron rad + chrX 13006922 intron rad + chrX 13007011 intron rad + chrX_8_13005001 chrX_13005001 RAL-161 1136 chrX 13172354 13172363 chrX 13172427 13172438 4 75 3.0 1.0 2.0 1.3 84 chrX 13172354 exon CG34411 - chrX 13172396 intron CG34411 - chrX 13172438 intron CG34411 - chrX_4_13170001 chrX_13170001 RAL-161 1137 chrX 13272178 13272181 chrX 13272255 13272258 4 77 2.0 0.5 1.2 1.8 80 chrX 13272178 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272258 intron HDAC4 - chrX_4_13270001 chrX_13270001 RAL-161 1138 chrX 13515703 13515735 chrX 13515952 13515984 5 247 1.0 3.0 2.0 1.7 281 chrX 13515703 intron Neto + chrX 13515844 intron Neto + chrX 13515984 intron Neto + chrX_5_13515001 chrX_13515001 RAL-161 1139 chrX 13843389 13843406 chrX 13843542 13843559 6 153 1.5 2.0 1.8 2.1 170 chrX 13843389 intron AMPdeam - chrX 13843474 intron AMPdeam - chrX 13843559 intron AMPdeam - chrX_6_13840001 chrX_13840001 RAL-161 1140 chrX 13975882 13975898 chrX 13975959 13975975 4 74 0.0 2.5 1.2 1.8 93 chrX 13975882 intron mamo - chrX 13975928 intron mamo - chrX 13975975 intron mamo - chrX_4_13975001 chrX_13975001 RAL-161 1141 chrX 14105022 14105056 chrX 14114172 14114183 roo 9 9145 2.0 7.5 4.8 1.6 9161 chrX 14105022 intergenic not near genes chrX 14109602 intergenic not near genes chrX 14114183 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-161 1142 chrX 14563288 14563300 chrX 14563733 14563749 4 448 2.0 2.0 2.0 1.3 461 chrX 14563288 intergenic not near genes chrX 14563518 intergenic not near genes chrX 14563749 intergenic not near genes chrX_4_14560001 chrX_14560001 RAL-161 1143 chrX 14628181 14628211 chrX 14628272 14628296 11 90 1.0 0.5 0.8 6.1 115 chrX 14628181 intron NetA - chrX 14628238 intron NetA - chrX 14628296 intron NetA - chrX_11_14625001 chrX_14625001 RAL-161 1144 chrX 14636461 14636492 chrX 14641902 14641922 I-element 13 5437 2.0 2.5 2.2 4.1 5461 chrX 14636461 intron NetA - chrX 14639192 intron NetA - chrX 14641922 intron NetA - chrX_13_14635001 chrX_14635001 RAL-161 1145 chrX 14756265 14756274 chrX 14756392 14756401 4 126 3.5 5.5 4.5 0.7 136 chrX 14756265 intergenic not near genes chrX 14756333 intergenic not near genes chrX 14756401 intergenic not near genes chrX_4_14755001 chrX_14755001 RAL-161 1146 chrX 14767948 14767977 chrX 14768023 14768057 6 79 1.5 2.5 2.0 2.0 109 chrX 14767948 intergenic not near genes chrX 14768002 intergenic not near genes chrX 14768057 intergenic not near genes chrX_6_14765001 chrX_14765001 RAL-161 1147 chrX 14818765 14818795 chrX 14823969 14823998 copia 4 5204 1.5 1.0 1.2 1.8 5233 chrX 14818765 intron rut - chrX 14821382 intron rut - chrX 14823998 intron rut - chrX_4_14820001 chrX_14820001 RAL-161 1148 chrX 15413054 15413082 chrX 15417349 15417384 Juan 11 4299 3.0 1.0 2.0 3.7 4330 chrX 15413054 intron Cngl - chrX 15415219 intron Cngl - chrX 15417384 intron Cngl - chrX_11_15415001 chrX_15415001 RAL-161 1149 chrX 16329439 16329447 chrX 16329506 16329530 4 78 0.0 4.5 2.2 1.2 91 chrX 16329439 intron CG9919 - chrX 16329484 intron CG9919 - chrX 16329530 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-161 1150 chrX 16365062 16365091 chrX 16365144 16365173 4 82 2.5 0.5 1.5 1.6 111 chrX 16365062 intron nonA + chrX 16365118 intron nonA + chrX 16365173 intron nonA + chrX_4_16365001 chrX_16365001 RAL-161 1151 chrX 16685952 16685966 chrX 16686188 16686203 5 237 1.5 1.0 1.2 2.3 251 chrX 16685952 intron Sep4 - chrX 16686078 intron Sep4 - chrX 16686203 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-161 1152 chrX 16690460 16690472 chrX 16690539 16690551 5 79 3.0 5.5 4.2 1.0 91 chrX 16690460 intron Sep4 - chrX 16690506 intron Sep4 - chrX 16690551 intron Sep4 - chrX_5_16690001 chrX_16690001 RAL-161 1153 chrX 17011717 17011998 chrX 17011862 17012068 11 90 2.0 5.0 3.5 2.4 351 chrX 17011717 intron CG45002 - chrX 17011892 intron CG45002 - chrX 17012068 intron CG45002 - chrX_11_17010001 chrX_17010001 RAL-161 1154 chrX 17012485 17012511 chrX 17012890 17012909 5 403 0.5 0.5 0.5 3.3 424 chrX 17012485 intron CG45002 - chrX 17012697 intron CG45002 - chrX 17012909 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-161 1155 chrX 17051334 17051350 chrX 17051408 17051429 4 78 3.5 3.0 3.2 1.0 95 chrX 17051334 intron CG45002 - chrX 17051382 intron CG45002 - chrX 17051429 intron CG45002 - chrX_4_17050001 chrX_17050001 RAL-161 1156 chrX 17061582 17061603 chrX 17061705 17061726 8 122 0.0 2.0 1.0 4.0 144 chrX 17061582 intron CG45002 - chrX 17061654 intron CG45002 - chrX 17061726 intron CG45002 - chrX_8_17060001 chrX_17060001 RAL-161 1157 chrX 17352605 17352622 chrX 17352708 17352723 5 102 0.0 1.5 0.8 2.8 118 chrX 17352605 intergenic not near genes chrX 17352664 intergenic not near genes chrX 17352723 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-161 1158 chrX 17545005 17545032 chrX 17545087 17545113 4 82 2.0 0.0 1.0 2.0 108 chrX 17545005 intron CG43658 - chrX 17545059 intron CG43658 - chrX 17545113 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-161 1159 chrX 17680894 17680925 chrX 17680971 17681002 10 76 0.5 3.0 1.8 3.6 108 chrX 17680894 intron chas - chrX 17680948 intron chas - chrX 17681002 intron chas - chrX_10_17680001 chrX_17680001 RAL-161 1160 chrX 17782568 17782594 chrX 17782657 17782681 6 89 1.0 2.5 1.8 2.1 113 chrX 17782568 intergenic not near genes chrX 17782624 intergenic not near genes chrX 17782681 intergenic not near genes chrX_6_17780001 chrX_17780001 RAL-161 1161 chrX 17792952 17792978 chrX 17796249 17796276 flea 4 3297 1.5 1.0 1.2 1.8 3324 chrX 17792952 intron OdsH + chrX 17794614 intron OdsH + chrX 17796276 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-161 1162 chrX 17880724 17880745 chrX 17880838 17880859 7 114 2.0 0.5 1.2 3.2 135 chrX 17880724 intron mnb - chrX 17880792 intron mnb - chrX 17880859 intron mnb - chrX_7_17880001 chrX_17880001 RAL-161 1163 chrX 18441334 18441365 chrX 18447947 18447978 13 6614 20.0 27.5 23.8 0.5 6644 chrX 18441334 intergenic not near genes chrX 18444656 exon CG32547 - chrX 18447978 intron CG32547 - chrX_13_18440001 chrX_18440001 RAL-161 1164 chrX 18582155 18582169 chrX 18582233 18582247 6 78 2.5 3.0 2.8 1.6 92 chrX 18582155 intergenic not near genes chrX 18582201 intergenic not near genes chrX 18582247 intergenic not near genes chrX_6_18580001 chrX_18580001 RAL-161 1165 chrX 18645015 18645049 chrX 18645113 18645147 5 98 2.5 1.5 2.0 1.7 132 chrX 18645015 intron Rip11 - chrX 18645081 intron Rip11 - chrX 18645147 intron Rip11 - chrX_5_18645001 chrX_18645001 RAL-161 1166 chrX 18736471 18736492 chrX 18736661 18736682 6 188 1.0 2.5 1.8 2.1 211 chrX 18736471 intergenic not near genes chrX 18736576 intergenic not near genes chrX 18736682 intergenic not near genes chrX_6_18735001 chrX_18735001 RAL-161 1167 chrX 19131974 19131998 chrX 19132053 19132081 13 83 2.0 2.5 2.2 4.1 107 chrX 19131974 intergenic not near genes chrX 19132028 intergenic not near genes chrX 19132081 intergenic not near genes chrX_13_19130001 chrX_19130001 RAL-161 1168 chrX 19185557 19185568 chrX 19185653 19185664 5 96 0.0 4.5 2.2 1.6 107 chrX 19185557 intron CG33253 + chrX 19185610 intron CG33253 + chrX 19185664 intron CG33253 + chrX_5_19185001 chrX_19185001 RAL-161 1169 chrX 19356993 19357007 chrX 19358433 19358448 NOF 4 1441 2.5 0.0 1.2 1.8 1455 chrX 19356993 intron kek5 + chrX 19357720 intron kek5 + chrX 19358448 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-161 1170 chrX 19380162 19380187 chrX 19380403 19380428 pogo 4 241 1.5 1.0 1.2 1.8 266 chrX 19380162 intron kek5 + chrX 19380295 intron kek5 + chrX 19380428 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-161 1171 chrX 19472127 19472155 chrX 19472693 19472703 jockey 8 565 2.5 1.0 1.8 2.9 576 chrX 19472127 intergenic kek5 + chrX 19472415 intergenic not near genes chrX 19472703 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-161 1172 chrX 19576573 19576584 chrX 19576650 19576662 6 78 1.0 1.5 1.2 2.7 89 chrX 19576573 intron Tao - chrX 19576618 intron Tao - chrX 19576662 intron Tao - chrX_6_19575001 chrX_19575001 RAL-161 1173 chrX 19710074 19710103 chrX 19711859 19711889 S-element 7 1785 2.0 4.0 3.0 1.8 1815 chrX 19710074 intron meso18E - chrX 19710982 intron meso18E - chrX 19711889 intron meso18E - chrX_7_19710001 chrX_19710001 RAL-161 1174 chrX 19744654 19744662 chrX 19744752 19744774 6 106 14.5 13.0 13.8 0.4 120 chrX 19744654 5` UTR,exon CG33932 +,Rpp20 + chrX 19744714 intron,intron CG33932 +,Rpp20 + chrX 19744774 5` UTR,exon CG33932 +,Rpp20 + chrX_6_19740001 chrX_19740001 RAL-161 1175 chrX 19962588 19962617 chrX 19962738 19962767 4 150 2.0 2.5 2.2 1.2 179 chrX 19962588 intron Nep3 + chrX 19962678 intron Nep3 + chrX 19962767 intron Nep3 + chrX_4_19960001 chrX_19960001 RAL-161 1176 chrX 19992418 19992437 chrX 19992494 19992512 5 75 1.5 6.5 4.0 1.0 94 chrX 19992418 intergenic not near genes chrX 19992465 intergenic not near genes chrX 19992512 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-161 1177 chrX 20118341 20118360 chrX 20118424 20118442 6 83 2.5 1.5 2.0 2.0 101 chrX 20118341 intergenic not near genes chrX 20118392 intergenic not near genes chrX 20118442 intergenic not near genes chrX_6_20115001 chrX_20115001 RAL-161 1178 chrX 20166022 20166038 chrX 20166097 20166118 5 78 2.5 2.5 2.5 1.4 96 chrX 20166022 intergenic Phf7 - chrX 20166070 intergenic Phf7 - chrX 20166118 intergenic Phf7 - chrX_5_20165001 chrX_20165001 RAL-161 1179 chrX 20359143 20359169 chrX 20359219 20359247 4 78 1.5 0.5 1.0 2.0 104 chrX 20359143 intergenic not near genes chrX 20359195 intergenic not near genes chrX 20359247 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-161 1180 chrX 20368321 20368346 chrX 20368398 20368425 9 80 5.5 3.0 4.2 1.7 104 chrX 20368321 intergenic not near genes chrX 20368373 intergenic not near genes chrX 20368425 intergenic not near genes chrX_9_20365001 chrX_20365001 RAL-161 1181 chrX 20374109 20374125 chrX 20374185 20374201 6 76 1.5 2.0 1.8 2.1 92 chrX 20374109 intergenic not near genes chrX 20374155 intergenic not near genes chrX 20374201 intergenic not near genes chrX_6_20370001 chrX_20370001 RAL-161 1182 chrX 20377327 20377343 chrX 20378794 20378810 hobo 5 1465 4.0 3.5 3.8 1.0 1483 chrX 20377327 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378810 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-161 1183 chrX 20437383 20437387 chrX 20437936 20437961 4 564 3.5 3.0 3.2 1.0 578 chrX 20437383 intron CG1695 + chrX 20437672 intron CG1695 + chrX 20437961 intron CG1695 + chrX_4_20435001 chrX_20435001 RAL-161 1184 chrX 20480572 20480587 chrX 20480660 20480675 4 88 2.5 4.5 3.5 0.9 103 chrX 20480572 intron RhoGAP19D - chrX 20480624 intron RhoGAP19D - chrX 20480675 intron RhoGAP19D - chrX_4_20480001 chrX_20480001 RAL-161 1185 chrX 20575161 20575171 chrX 20575239 20575248 4 77 2.0 2.5 2.2 1.2 87 chrX 20575161 intergenic CG42580 + chrX 20575204 intergenic not near genes chrX 20575248 intergenic not near genes chrX_4_20575001 chrX_20575001 RAL-161 1186 chrX 20814194 20814215 chrX 20814287 20814309 6 92 3.0 0.0 1.5 2.4 115 chrX 20814194 intron shakB - chrX 20814252 intron shakB - chrX 20814309 intron shakB - chrX_6_20810001 chrX_20810001 RAL-161 1187 chrX 20940735 20940750 chrX 20942203 20942218 hobo 6 1469 3.0 3.0 3.0 1.5 1483 chrX 20940735 intergenic not near genes chrX 20941476 intergenic not near genes chrX 20942218 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-161 1188 chrX 21042555 21042585 chrX 21045341 21045370 10 2785 25.0 28.5 26.8 0.4 2815 chrX 21042555 exon Mgstl + chrX 21043962 exon,3` UTR Mgstl +,CR44431 - chrX 21045370 intron Cbs + chrX_10_21040001 chrX_21040001 RAL-161 1189 chrX 21410413 21410444 chrX 21410673 21410704 5 259 3.5 2.5 3.0 1.2 291 chrX 21410413 intron CR45003 - chrX 21410558 intergenic CR45003 - chrX 21410704 intergenic CR45003 - chrX_5_21410001 chrX_21410001 RAL-161 1190 chrX 21419703 21419737 chrX 21419792 21419826 5 89 0.5 1.5 1.0 2.5 123 chrX 21419703 intergenic not near genes chrX 21419764 intergenic not near genes chrX 21419826 intergenic not near genes chrX_5_21415001 chrX_21415001 RAL-161 1191 chrX 21517004 21517021 chrX 21517070 21517100 6 76 1.0 3.5 2.2 1.9 96 chrX 21517004 intron CR45082 - chrX 21517052 intron CR45082 - chrX 21517100 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-161 1192 chrX 22525853 22525874 chrX 22525929 22525950 4 76 2.0 0.0 1.0 2.0 97 chrX 22525853 intron CG17600 + chrX 22525902 intron CG17600 + chrX 22525950 intron CG17600 + chrX_4_22525001 chrX_22525001 RAL-161 1193 chrX 22763637 22763644 chrX 22763723 22763730 4 86 1.0 3.0 2.0 1.3 93 chrX 22763637 intron CR44997 + chrX 22763684 intron CR44997 + chrX 22763730 intron CR44997 + chrX_4_22760001 chrX_22760001 RAL-161 1194 chrX 22867993 22868003 chrX 22868106 22868117 4 113 4.0 0.0 2.0 1.3 124 chrX 22867993 exon CG42346 + chrX 22868055 intron CG42346 + chrX 22868117 intron CG42346 + chrX_4_22865001 chrX_22865001 RAL-161 1195 chrX 22895728 22895759 chrX 22895846 22895870 6 117 1.0 4.0 2.5 1.7 142 chrX 22895728 intergenic not near genes chrX 22895799 intergenic not near genes chrX 22895870 intergenic not near genes chrX_6_22895001 chrX_22895001 RAL-161 1196 chrX 22992402 22992422 chrX 22992533 22992553 5 130 0.5 1.5 1.0 2.5 151 chrX 22992402 intron,intron stnA -,stnB - chrX 22992478 intron,intron stnA -,stnB - chrX 22992553 intron,intron stnA -,stnB - chrX_5_22990001 chrX_22990001 RAL-161 1197 chrX 22996316 22996327 chrX 23003548 23003558 roo 4 7231 4.5 2.0 3.2 1.0 7242 chrX 22996316 intron,intron stnA -,stnB - chrX 22999937 intron,intron stnA -,stnB - chrX 23003558 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-161 1198 chrY 975806 975818 chrY 975885 975898 5 93 97.5 126.0 111.8 0.0 92 chrY 975806 intergenic not near genes chrY 975852 intergenic not near genes chrY 975898 intergenic not near genes chrY_5_975001 chrY_975001 RAL-161