SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47468 47471 chr2L 52573 52576 jockey 4 5105 8.5 6.5 7.5 0.5 5108 chr2L 47468 intron Cda5 - chr2L 50022 intron Cda5 - chr2L 52576 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-158 2 chr2L 47477 47488 chr2L 52569 52580 jockey 4 5098 5.5 6.0 5.8 0.6 5103 chr2L 47477 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52580 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-158 3 chr2L 297685 297717 chr2L 297785 297785 8 93 1.0 2.5 1.8 2.9 100 chr2L 297685 intergenic Pi3K21B +,Hop + chr2L 297735 intergenic Pi3K21B +,Hop + chr2L 297785 intergenic Pi3K21B +,Hop + chr2L_8_295001 chr2L_295001 RAL-158 4 chr2L 314127 314159 chr2L 314204 314219 6 73 0.5 1.0 0.8 3.3 92 chr2L 314127 intron Plc21C + chr2L 314173 intron Plc21C + chr2L 314219 intron Plc21C + chr2L_6_310001 chr2L_310001 RAL-158 5 chr2L 323461 323481 chr2L 323533 323553 9 73 2.0 6.5 4.2 1.7 92 chr2L 323461 intron Plc21C + chr2L 323507 intron Plc21C + chr2L 323553 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-158 6 chr2L 325131 325150 chr2L 325208 325227 4 76 3.5 4.0 3.8 0.8 96 chr2L 325131 intron Plc21C + chr2L 325179 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-158 7 chr2L 678716 678731 chr2L 678816 678819 7 100 1.5 0.5 1.0 3.5 103 chr2L 678716 intron ds - chr2L 678768 intron ds - chr2L 678819 intron ds - chr2L_7_675001 chr2L_675001 RAL-158 8 chr2L 686922 686952 chr2L 695962 695992 roo 5 9038 1.0 1.5 1.2 2.3 9070 chr2L 686922 intron ds - chr2L 691457 intron ds - chr2L 695992 intron ds - chr2L_5_690001 chr2L_690001 RAL-158 9 chr2L 770463 770489 chr2L 772244 772246 Bari1 5 1773 3.0 2.5 2.8 1.3 1783 chr2L 770463 intergenic not near genes chr2L 771354 intergenic not near genes chr2L 772246 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-158 10 chr2L 877842 877858 chr2L 877923 877927 4 76 7.5 2.5 5.0 0.7 85 chr2L 877842 3` UTR,exon CG15824 -,ninaA + chr2L 877884 3` UTR,intron CG15824 -,ninaA + chr2L 877927 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-158 11 chr2L 914680 914703 chr2L 914761 914784 4 81 1.0 4.0 2.5 1.1 104 chr2L 914680 intron GluRIIC + chr2L 914732 intron GluRIIC + chr2L 914784 intron GluRIIC + chr2L_4_910001 chr2L_910001 RAL-158 12 chr2L 931635 931672 chr2L 931714 931732 6 70 2.5 1.5 2.0 2.0 97 chr2L 931635 intron CG4341 + chr2L 931684 intron CG4341 + chr2L 931732 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-158 13 chr2L 1035560 1035593 chr2L 1035637 1035670 7 77 1.0 1.0 1.0 3.5 110 chr2L 1035560 intron IA-2 - chr2L 1035615 intron IA-2 - chr2L 1035670 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-158 14 chr2L 1126671 1126705 chr2L 1126747 1126781 8 72 1.5 3.0 2.2 2.5 110 chr2L 1126671 intron Pino - chr2L 1126726 intron Pino - chr2L 1126781 intron Pino - chr2L_8_1125001 chr2L_1125001 RAL-158 15 chr2L 1220129 1220145 chr2L 1227595 1227611 blood 5 7463 5.5 2.0 3.8 1.0 7482 chr2L 1220129 intron CG42329 + chr2L 1223870 intron CG42329 + chr2L 1227611 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-158 16 chr2L 1235435 1235461 chr2L 1235609 1235627 7 168 1.5 4.5 3.0 1.8 192 chr2L 1235435 intergenic not near genes chr2L 1235531 intergenic not near genes chr2L 1235627 intergenic not near genes chr2L_7_1235001 chr2L_1235001 RAL-158 17 chr2L 1481447 1481464 chr2L 1481533 1481533 4 80 3.5 2.5 3.0 1.0 86 chr2L 1481447 intergenic not near genes chr2L 1481490 intergenic not near genes chr2L 1481533 intergenic not near genes chr2L_4_1480001 chr2L_1480001 RAL-158 18 chr2L 1570700 1570723 chr2L 1573558 1573580 F-element 5 2864 0.5 2.5 1.5 2.0 2880 chr2L 1570700 intron haf + chr2L 1572140 intron haf + chr2L 1573580 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-158 19 chr2L 1721834 1721848 chr2L 1721906 1721932 6 77 0.0 1.0 0.5 4.0 98 chr2L 1721834 intron Rim2 - chr2L 1721883 intron Rim2 - chr2L 1721932 intron Rim2 - chr2L_6_1720001 chr2L_1720001 RAL-158 20 chr2L 1844699 1844724 chr2L 1844781 1844790 4 78 0.5 0.0 0.2 3.3 91 chr2L 1844699 exon wry + chr2L 1844744 intron wry + chr2L 1844790 intron wry + chr2L_4_1840001 chr2L_1840001 RAL-158 21 chr2L 2049226 2049235 chr2L 2049310 2049319 4 82 0.0 2.5 1.2 1.8 93 chr2L 2049226 intergenic not near genes chr2L 2049272 intergenic not near genes chr2L 2049319 intergenic not near genes chr2L_4_2045001 chr2L_2045001 RAL-158 22 chr2L 2085711 2085729 chr2L 2086050 2086068 5 339 0.0 1.5 0.8 2.8 357 chr2L 2085711 intron dpr3 - chr2L 2085890 intron dpr3 - chr2L 2086068 intron dpr3 - chr2L_5_2085001 chr2L_2085001 RAL-158 23 chr2L 2100385 2100407 chr2L 2109526 2109535 roo 9 9146 3.5 4.5 4.0 1.8 9150 chr2L 2100385 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109535 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-158 24 chr2L 2112127 2112146 chr2L 2119773 2119802 opus 6 7650 2.5 4.0 3.2 1.4 7675 chr2L 2112127 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119802 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-158 25 chr2L 2177383 2177410 chr2L 2177462 2177480 7 78 3.5 3.5 3.5 1.6 97 chr2L 2177383 intron aop - chr2L 2177432 intron aop - chr2L 2177480 intron aop - chr2L_7_2175001 chr2L_2175001 RAL-158 26 chr2L 2250419 2250433 chr2L 2251186 2251190 4 763 7.5 0.0 3.8 0.8 771 chr2L 2250419 intergenic Ser12 - chr2L 2250804 exon Ser12 - chr2L 2251190 exon Ser12 - chr2L_4_2250001 chr2L_2250001 RAL-158 27 chr2L 2294040 2294073 chr2L 2299244 2299256 copia 8 5196 2.5 4.5 3.5 1.8 5216 chr2L 2294040 intergenic not near genes chr2L 2296648 intergenic not near genes chr2L 2299256 intergenic not near genes chr2L_8_2295001 chr2L_2295001 RAL-158 28 chr2L 2311078 2311092 chr2L 2311173 2311188 4 95 2.5 0.0 1.2 1.8 110 chr2L 2311078 intron CG9967 - chr2L 2311133 intron CG9967 - chr2L 2311188 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-158 29 chr2L 2618052 2618068 chr2L 2618129 2618147 4 78 1.0 3.5 2.2 1.2 95 chr2L 2618052 intergenic not near genes chr2L 2618100 intergenic not near genes chr2L 2618147 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-158 30 chr2L 2698865 2698884 chr2L 2698952 2698971 7 83 2.5 2.5 2.5 2.0 106 chr2L 2698865 intron CG31690 + chr2L 2698918 intron CG31690 + chr2L 2698971 intron CG31690 + chr2L_7_2695001 chr2L_2695001 RAL-158 31 chr2L 3026214 3026248 chr2L 3026870 3026904 12 663 24.0 33.0 28.5 0.4 690 chr2L 3026214 3` UTR CG3542 + chr2L 3026559 3` UTR CG3605 - chr2L 3026904 exon CG3605 - chr2L_12_3025001 chr2L_3025001 RAL-158 32 chr2L 3087407 3087417 chr2L 3087513 3087517 5 105 1.0 2.5 1.8 1.8 110 chr2L 3087407 intron toc - chr2L 3087462 intron toc - chr2L 3087517 intron toc - chr2L_5_3085001 chr2L_3085001 RAL-158 33 chr2L 3147276 3147308 chr2L 3147350 3147384 11 73 2.5 2.5 2.5 3.1 108 chr2L 3147276 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147384 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-158 34 chr2L 3200999 3201030 chr2L 3201116 3201147 7 114 1.0 2.5 1.8 2.5 148 chr2L 3200999 intergenic not near genes chr2L 3201073 intergenic not near genes chr2L 3201147 intergenic not near genes chr2L_7_3200001 chr2L_3200001 RAL-158 35 chr2L 3393285 3393310 chr2L 3393383 3393408 5 98 1.5 4.0 2.8 1.3 123 chr2L 3393285 intergenic not near genes chr2L 3393346 intergenic not near genes chr2L 3393408 intergenic not near genes chr2L_5_3390001 chr2L_3390001 RAL-158 36 chr2L 3763722 3763737 chr2L 3763815 3763843 7 101 3.0 4.5 3.8 1.5 121 chr2L 3763722 exon CG43707 + chr2L 3763782 exon CG43707 + chr2L 3763843 exon CG43707 + chr2L_7_3760001 chr2L_3760001 RAL-158 37 chr2L 3891909 3891915 chr2L 3891978 3892000 4 81 1.5 2.5 2.0 1.3 91 chr2L 3891909 intron capu - chr2L 3891954 intron capu - chr2L 3892000 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-158 38 chr2L 4166375 4166411 chr2L 4166458 4166494 6 82 1.5 1.0 1.2 2.7 119 chr2L 4166375 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-158 39 chr2L 4285709 4285737 chr2L 4285788 4285813 7 76 6.5 2.5 4.5 1.3 104 chr2L 4285709 intron tutl + chr2L 4285761 intron tutl + chr2L 4285813 intron tutl + chr2L_7_4285001 chr2L_4285001 RAL-158 40 chr2L 4569276 4569296 chr2L 4569341 4569371 12 71 4.5 7.0 5.8 1.8 95 chr2L 4569276 intron dp - chr2L 4569324 intron dp - chr2L 4569371 intron dp - chr2L_12_4565001 chr2L_4565001 RAL-158 41 chr2L 4601715 4601735 chr2L 4609149 4609157 mdg1 7 7437 0.5 6.0 3.2 1.7 7442 chr2L 4601715 intron dp - chr2L 4605436 intron dp - chr2L 4609157 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-158 42 chr2L 4767733 4767748 chr2L 4767856 4767856 6 119 1.5 1.0 1.2 2.7 123 chr2L 4767733 intron CG15630 - chr2L 4767794 intron CG15630 - chr2L 4767856 intron CG15630 - chr2L_6_4765001 chr2L_4765001 RAL-158 43 chr2L 4879167 4879176 chr2L 4880383 4880410 7 1222 24.5 17.5 21.0 0.3 1243 chr2L 4879167 exon Cf2 - chr2L 4879788 intron Cf2 - chr2L 4880410 exon Cf2 - chr2L_7_4875001 chr2L_4875001 RAL-158 44 chr2L 4880431 4880439 chr2L 4881226 4881232 4 792 15.0 19.5 17.2 0.2 801 chr2L 4880431 exon Cf2 - chr2L 4880832 intron Cf2 - chr2L 4881232 exon Cf2 - chr2L_4_4880001 chr2L_4880001 RAL-158 45 chr2L 5000995 5001020 chr2L 5001086 5001111 9 87 1.0 2.5 1.8 3.2 116 chr2L 5000995 intron Rtnl1 - chr2L 5001053 intron Rtnl1 - chr2L 5001111 intron Rtnl1 - chr2L_9_5000001 chr2L_5000001 RAL-158 46 chr2L 5433850 5433859 chr2L 5433926 5433939 5 77 2.0 2.0 2.0 1.7 89 chr2L 5433850 3` UTR CR43715 - chr2L 5433894 3` UTR CR43715 - chr2L 5433939 3` UTR CR43715 - chr2L_5_5430001 chr2L_5430001 RAL-158 47 chr2L 5666294 5666322 chr2L 5666381 5666412 5 78 1.0 0.0 0.5 3.3 118 chr2L 5666294 intron Hsp60C + chr2L 5666353 intron Hsp60C + chr2L 5666412 intron Hsp60C + chr2L_5_5665001 chr2L_5665001 RAL-158 48 chr2L 5805219 5805247 chr2L 5805338 5805347 7 114 1.5 2.0 1.8 2.5 128 chr2L 5805219 intergenic CG11034 + chr2L 5805283 intergenic CG11034 + chr2L 5805347 intergenic CG11034 + chr2L_7_5805001 chr2L_5805001 RAL-158 49 chr2L 5827719 5827729 chr2L 5836721 5836723 roo 5 9004 4.0 3.0 3.5 1.1 9004 chr2L 5827719 intron TrissinR + chr2L 5832221 intron TrissinR + chr2L 5836723 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-158 50 chr2L 5961354 5961388 chr2L 5961451 5961482 10 88 2.5 3.0 2.8 2.6 128 chr2L 5961354 intergenic not near genes chr2L 5961418 intergenic not near genes chr2L 5961482 intergenic not near genes chr2L_10_5960001 chr2L_5960001 RAL-158 51 chr2L 6050443 6050467 chr2L 6050547 6050555 4 97 0.5 0.0 0.2 3.3 112 chr2L 6050443 intergenic CG12393 +,CG9135 + chr2L 6050499 intergenic CG12393 +,CG9135 + chr2L 6050555 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-158 52 chr2L 6188662 6188690 chr2L 6188737 6188743 6 71 3.0 2.0 2.5 1.7 81 chr2L 6188662 intron CG34380 + chr2L 6188702 intron CG34380 + chr2L 6188743 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-158 53 chr2L 6426856 6426887 chr2L 6445115 6445147 roo 6 18258 3.0 2.0 2.5 1.7 18291 chr2L 6426856 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-158 54 chr2L 6626894 6626917 chr2L 6626969 6627002 4 80 3.0 1.5 2.2 1.2 108 chr2L 6626894 intron Oatp26F - chr2L 6626948 intron Oatp26F - chr2L 6627002 intron Oatp26F - chr2L_4_6625001 chr2L_6625001 RAL-158 55 chr2L 6969277 6969304 chr2L 6969357 6969384 5 77 4.5 4.0 4.2 1.0 107 chr2L 6969277 3` UTR snRNP-U1-70K - chr2L 6969330 3` UTR snRNP-U1-70K - chr2L 6969384 3` UTR snRNP-U1-70K - chr2L_5_6965001 chr2L_6965001 RAL-158 56 chr2L 7111754 7111778 chr2L 7111839 7111855 4 79 1.5 0.0 0.8 2.2 101 chr2L 7111754 intron Pvf3 - chr2L 7111804 intron Pvf3 - chr2L 7111855 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-158 57 chr2L 7179105 7179138 chr2L 7179189 7179216 9 77 1.5 3.0 2.2 2.8 111 chr2L 7179105 intergenic not near genes chr2L 7179160 intergenic not near genes chr2L 7179216 intergenic not near genes chr2L_9_7175001 chr2L_7175001 RAL-158 58 chr2L 7337006 7337024 chr2L 7337083 7337101 5 76 2.0 1.5 1.8 1.8 95 chr2L 7337006 intron Wnt6 + chr2L 7337054 intron Wnt6 + chr2L 7337101 intron Wnt6 + chr2L_5_7335001 chr2L_7335001 RAL-158 59 chr2L 7343323 7343351 chr2L 7350439 7350446 roo 4 7110 1.5 3.5 2.5 1.1 7123 chr2L 7343323 intron Wnt6 + chr2L 7346884 intron Wnt6 + chr2L 7350446 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-158 60 chr2L 7766632 7766655 chr2L 7766707 7766714 4 66 1.5 0.5 1.0 2.0 82 chr2L 7766632 intergenic not near genes chr2L 7766673 intergenic not near genes chr2L 7766714 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-158 61 chr2L 8044107 8044127 chr2L 8044176 8044206 5 75 1.0 0.5 0.8 2.8 99 chr2L 8044107 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044206 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-158 62 chr2L 8167149 8167173 chr2L 8167240 8167264 5 87 1.0 4.0 2.5 1.4 115 chr2L 8167149 intron Piezo + chr2L 8167206 intron Piezo + chr2L 8167264 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-158 63 chr2L 8184925 8184954 chr2L 8185016 8185033 5 85 2.5 2.0 2.2 1.6 108 chr2L 8184925 intron Piezo + chr2L 8184979 intron Piezo + chr2L 8185033 intron Piezo + chr2L_5_8180001 chr2L_8180001 RAL-158 64 chr2L 8288677 8288702 chr2L 8288773 8288798 4 96 0.5 2.5 1.5 1.6 121 chr2L 8288677 intron Btk29A - chr2L 8288738 intron Btk29A - chr2L 8288798 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-158 65 chr2L 8603572 8603587 chr2L 8603653 8603669 4 82 1.0 2.0 1.5 1.6 97 chr2L 8603572 intron Sema-1a + chr2L 8603620 intron Sema-1a + chr2L 8603669 intron Sema-1a + chr2L_4_8600001 chr2L_8600001 RAL-158 66 chr2L 8783965 8783997 chr2L 8784041 8784073 10 72 1.5 5.0 3.2 2.4 108 chr2L 8783965 intergenic not near genes chr2L 8784019 intergenic not near genes chr2L 8784073 intergenic not near genes chr2L_10_8780001 chr2L_8780001 RAL-158 67 chr2L 9000279 9000306 chr2L 9007789 9007816 roo 6 7509 2.0 2.5 2.2 1.9 7537 chr2L 9000279 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007816 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-158 68 chr2L 9023154 9023186 chr2L 9023250 9023283 8 95 3.0 2.5 2.8 2.1 129 chr2L 9023154 intergenic not near genes chr2L 9023218 intergenic not near genes chr2L 9023283 intergenic not near genes chr2L_8_9020001 chr2L_9020001 RAL-158 69 chr2L 9084336 9084340 chr2L 16217660 16217660 14 7133322 10.5 8.5 9.5 1.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-158 70 chr2L 9251145 9251174 chr2L 9251241 9251271 7 95 1.5 3.0 2.2 2.2 126 chr2L 9251145 intergenic aust -,borr - chr2L 9251208 intergenic aust -,borr - chr2L 9251271 intergenic borr -,aust - chr2L_7_9250001 chr2L_9250001 RAL-158 71 chr2L 9285030 9285046 chr2L 9285102 9285107 5 68 2.5 2.5 2.5 1.4 77 chr2L 9285030 intron Ggamma30A + chr2L 9285068 intron Ggamma30A + chr2L 9285107 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-158 72 chr2L 9300460 9300492 chr2L 9300536 9300570 4 77 1.5 0.5 1.0 2.0 110 chr2L 9300460 3` UTR Ggamma30A + chr2L 9300515 3` UTR Ggamma30A + chr2L 9300570 3` UTR Ggamma30A + chr2L_4_9300001 chr2L_9300001 RAL-158 73 chr2L 9310561 9310580 chr2L 9310652 9310657 4 85 0.5 0.0 0.2 3.3 96 chr2L 9310561 intergenic not near genes chr2L 9310609 intergenic not near genes chr2L 9310657 intergenic not near genes chr2L_4_9310001 chr2L_9310001 RAL-158 74 chr2L 9385136 9385150 chr2L 9385218 9385240 5 83 1.0 2.0 1.5 2.0 104 chr2L 9385136 intron Shawl - chr2L 9385188 intron Shawl - chr2L 9385240 intron Shawl - chr2L_5_9385001 chr2L_9385001 RAL-158 75 chr2L 9393516 9393530 chr2L 9396467 9396496 jockey 4 2958 0.5 2.5 1.5 1.6 2980 chr2L 9393516 intron Shawl - chr2L 9395006 intron Shawl - chr2L 9396496 intron Shawl - chr2L_4_9395001 chr2L_9395001 RAL-158 76 chr2L 9490449 9490475 chr2L 9490595 9490620 8 140 4.5 4.0 4.2 1.5 171 chr2L 9490449 intergenic not near genes chr2L 9490534 intergenic not near genes chr2L 9490620 intergenic not near genes chr2L_8_9490001 chr2L_9490001 RAL-158 77 chr2L 9658531 9658540 chr2L 9658910 9658932 4 384 1.0 3.5 2.2 1.2 401 chr2L 9658531 intergenic not near genes chr2L 9658732 intergenic not near genes chr2L 9658932 intergenic not near genes chr2L_4_9655001 chr2L_9655001 RAL-158 78 chr2L 9843213 9843236 chr2L 9843290 9843309 4 74 0.0 0.0 0.0 4.0 96 chr2L 9843213 intron nAChRalpha6 - chr2L 9843261 intron nAChRalpha6 - chr2L 9843309 intron nAChRalpha6 - chr2L_4_9840001 chr2L_9840001 RAL-158 79 chr2L 9943859 9943882 chr2L 9943952 9943975 4 89 0.5 0.5 0.5 2.7 116 chr2L 9943859 intron CG5853 - chr2L 9943917 intron CG5853 - chr2L 9943975 intron CG5853 - chr2L_4_9940001 chr2L_9940001 RAL-158 80 chr2L 9973726 9973759 chr2L 9980845 9980864 HMS-Beagle 15 7111 3.5 4.0 3.8 3.1 7138 chr2L 9973726 intergenic not near genes chr2L 9977295 intergenic not near genes chr2L 9980864 intergenic not near genes chr2L_15_9975001 chr2L_9975001 RAL-158 81 chr2L 10018071 10018101 chr2L 10018410 10018439 6 335 2.0 2.5 2.2 1.9 368 chr2L 10018071 intergenic not near genes chr2L 10018255 intergenic not near genes chr2L 10018439 intergenic not near genes chr2L_6_10015001 chr2L_10015001 RAL-158 82 chr2L 10051728 10051743 chr2L 10051811 10051828 6 82 3.5 5.0 4.2 1.2 100 chr2L 10051728 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051828 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-158 83 chr2L 10105283 10105309 chr2L 10105357 10105385 5 68 2.0 1.5 1.8 1.8 102 chr2L 10105283 intron,intron CG44153 -,CG34109 + chr2L 10105334 intron,intron CG44153 -,CG34109 + chr2L 10105385 intron,intron CG44153 -,CG34109 + chr2L_5_10105001 chr2L_10105001 RAL-158 84 chr2L 10152841 10152867 chr2L 10152932 10152946 5 89 5.0 3.5 4.2 1.0 105 chr2L 10152841 intron,exon CG44153 -,CG4839 + chr2L 10152894 intron,intron CG44153 -,CG4839 + chr2L 10152946 intron,intron CG44153 -,CG4839 + chr2L_5_10150001 chr2L_10150001 RAL-158 85 chr2L 10580810 10580819 chr2L 10580876 10580878 5 71 2.0 1.0 1.5 2.0 68 chr2L 10580810 intron Trim9 + chr2L 10580844 intron Trim9 + chr2L 10580878 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-158 86 chr2L 10785081 10785094 chr2L 10785136 10785164 9 71 2.5 2.5 2.5 2.6 83 chr2L 10785081 intron CG31869 - chr2L 10785122 intron CG31869 - chr2L 10785164 intron CG31869 - chr2L_9_10785001 chr2L_10785001 RAL-158 87 chr2L 10862846 10862872 chr2L 10864460 10864486 Rt1c 7 1612 3.0 6.5 4.8 1.2 1640 chr2L 10862846 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864486 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-158 88 chr2L 10912992 10913002 chr2L 10913070 10913081 4 79 1.0 4.0 2.5 1.1 89 chr2L 10912992 intergenic not near genes chr2L 10913036 intergenic not near genes chr2L 10913081 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-158 89 chr2L 10946950 10946966 chr2L 10956164 10956180 roo 6 9214 5.0 8.5 6.8 0.8 9230 chr2L 10946950 intron dpr2 - chr2L 10951565 intron dpr2 - chr2L 10956180 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-158 90 chr2L 11380613 11380639 chr2L 11380690 11380716 4 72 1.0 0.5 0.8 2.2 103 chr2L 11380613 intergenic not near genes chr2L 11380664 intergenic not near genes chr2L 11380716 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-158 91 chr2L 11455562 11455594 chr2L 11455647 11455652 13 82 3.5 4.0 3.8 2.7 90 chr2L 11455562 intergenic not near genes chr2L 11455607 intergenic not near genes chr2L 11455652 intergenic not near genes chr2L_13_11455001 chr2L_11455001 RAL-158 92 chr2L 11491135 11491151 chr2L 11491216 11491223 4 78 1.5 2.0 1.8 1.4 88 chr2L 11491135 intergenic not near genes chr2L 11491179 intergenic not near genes chr2L 11491223 intergenic not near genes chr2L_4_11490001 chr2L_11490001 RAL-158 93 chr2L 11563641 11563670 chr2L 11568845 11568874 copia 5 5204 2.0 2.0 2.0 1.7 5233 chr2L 11563641 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-158 94 chr2L 11713523 11713540 chr2L 11720974 11721008 blood 8 7466 0.0 1.0 0.5 5.3 7485 chr2L 11713523 intergenic not near genes chr2L 11717266 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-158 95 chr2L 11752882 11752890 chr2L 11753155 11753167 5 278 2.0 1.5 1.8 1.8 285 chr2L 11752882 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753167 3` UTR CG42470 - chr2L_5_11750001 chr2L_11750001 RAL-158 96 chr2L 11762638 11762651 chr2L 11762707 11762738 5 80 2.0 1.0 1.5 2.0 100 chr2L 11762638 intergenic not near genes chr2L 11762688 intergenic not near genes chr2L 11762738 intergenic not near genes chr2L_5_11760001 chr2L_11760001 RAL-158 97 chr2L 11894368 11894385 chr2L 11894451 11894476 6 86 6.0 1.5 3.8 1.2 108 chr2L 11894368 intron Pde1c - chr2L 11894422 intron Pde1c - chr2L 11894476 intron Pde1c - chr2L_6_11890001 chr2L_11890001 RAL-158 98 chr2L 12005533 12005555 chr2L 12005607 12005622 5 74 2.5 3.0 2.8 1.3 89 chr2L 12005533 intergenic not near genes chr2L 12005578 intergenic not near genes chr2L 12005622 intergenic not near genes chr2L_5_12005001 chr2L_12005001 RAL-158 99 chr2L 12127481 12127485 chr2L 12127574 12127583 4 96 4.5 4.0 4.2 0.8 102 chr2L 12127481 exon CG17211 + chr2L 12127532 exon CG17211 + chr2L 12127583 exon CG17211 + chr2L_4_12125001 chr2L_12125001 RAL-158 100 chr2L 12234042 12234052 chr2L 12234127 12234129 4 82 3.0 1.0 2.0 1.3 87 chr2L 12234042 intron aret + chr2L 12234086 intron aret + chr2L 12234129 intron aret + chr2L_4_12230001 chr2L_12230001 RAL-158 101 chr2L 12236314 12236319 chr2L 12236365 12236387 4 67 3.0 1.5 2.2 1.2 73 chr2L 12236314 intron aret + chr2L 12236350 intron aret + chr2L 12236387 intron aret + chr2L_4_12235001 chr2L_12235001 RAL-158 102 chr2L 12305412 12305438 chr2L 12305498 12305526 5 83 0.5 2.5 1.5 2.0 114 chr2L 12305412 intron aret + chr2L 12305469 intron aret + chr2L 12305526 intron aret + chr2L_5_12305001 chr2L_12305001 RAL-158 103 chr2L 12736676 12736706 chr2L 12736752 12736765 6 73 2.0 6.5 4.2 1.2 89 chr2L 12736676 intron MRP + chr2L 12736720 intron MRP + chr2L 12736765 intron MRP + chr2L_6_12735001 chr2L_12735001 RAL-158 104 chr2L 12739186 12739199 chr2L 12743953 12743979 Doc 4 4774 2.0 2.5 2.2 1.2 4793 chr2L 12739186 exon MRP + chr2L 12741582 intron MRP + chr2L 12743979 exon MRP + chr2L_4_12740001 chr2L_12740001 RAL-158 105 chr2L 12861693 12861730 chr2L 12863160 12863197 hobo 13 1461 1.0 1.5 1.2 5.9 1504 chr2L 12861693 intergenic not near genes chr2L 12862445 intergenic not near genes chr2L 12863197 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-158 106 chr2L 12963796 12963824 chr2L 12963898 12963914 7 100 2.5 3.0 2.8 1.8 118 chr2L 12963796 intergenic not near genes chr2L 12963855 intergenic not near genes chr2L 12963914 intergenic not near genes chr2L_7_12960001 chr2L_12960001 RAL-158 107 chr2L 13147748 13147762 chr2L 13147824 13147838 5 75 1.5 1.5 1.5 2.0 90 chr2L 13147748 intergenic not near genes chr2L 13147793 intergenic not near genes chr2L 13147838 intergenic not near genes chr2L_5_13145001 chr2L_13145001 RAL-158 108 chr2L 13152241 13152253 chr2L 13152307 13152331 4 68 4.0 3.5 3.8 0.8 90 chr2L 13152241 intergenic not near genes chr2L 13152286 intergenic not near genes chr2L 13152331 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-158 109 chr2L 13241960 13241974 chr2L 13244344 13244344 BS 7 2381 3.0 0.0 1.5 2.8 2384 chr2L 13241960 5` UTR CR45330 + chr2L 13243152 intron CR45330 + chr2L 13244344 5` UTR CR45330 + chr2L_7_13240001 chr2L_13240001 RAL-158 110 chr2L 13374324 13374355 chr2L 13374411 13374418 4 78 1.5 0.0 0.8 2.2 94 chr2L 13374324 5` UTR CG6565 + chr2L 13374371 5` UTR CG6565 + chr2L 13374418 5` UTR CG6565 + chr2L_4_13370001 chr2L_13370001 RAL-158 111 chr2L 13421128 13421152 chr2L 13421205 13421228 7 74 1.0 1.5 1.2 3.2 100 chr2L 13421128 intron CG42784 + chr2L 13421178 intron CG42784 + chr2L 13421228 intron CG42784 + chr2L_7_13420001 chr2L_13420001 RAL-158 112 chr2L 13618058 13618075 chr2L 13618135 13618156 8 84 4.5 5.0 4.8 1.4 98 chr2L 13618058 intron kuz + chr2L 13618107 intron kuz + chr2L 13618156 intron kuz + chr2L_8_13615001 chr2L_13615001 RAL-158 113 chr2L 13692159 13692179 chr2L 13692235 13692237 4 72 2.0 0.0 1.0 2.0 78 chr2L 13692159 intron CG31814 - chr2L 13692198 intron CG31814 - chr2L 13692237 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-158 114 chr2L 13981521 13981550 chr2L 13981610 13981640 6 86 2.5 1.0 1.8 2.1 119 chr2L 13981521 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981640 intron NimC2 + chr2L_6_13980001 chr2L_13980001 RAL-158 115 chr2L 13988292 13988367 chr2L 13988379 13988448 4 84 0.0 0.0 0.0 4.0 156 chr2L 13988292 intron rk - chr2L 13988370 intron rk - chr2L 13988448 intron rk - chr2L_4_13985001 chr2L_13985001 RAL-158 116 chr2L 14005183 14005207 chr2L 14005261 14005266 4 71 4.5 1.0 2.8 1.1 83 chr2L 14005183 intergenic not near genes chr2L 14005224 intergenic not near genes chr2L 14005266 intergenic not near genes chr2L_4_14005001 chr2L_14005001 RAL-158 117 chr2L 14010424 14010429 chr2L 14010481 14010505 4 66 0.5 2.0 1.2 1.8 81 chr2L 14010424 intergenic not near genes chr2L 14010464 intergenic not near genes chr2L 14010505 intergenic not near genes chr2L_4_14010001 chr2L_14010001 RAL-158 118 chr2L 14017770 14017796 chr2L 14017862 14017882 7 83 1.5 2.0 1.8 2.5 112 chr2L 14017770 intron bgm + chr2L 14017826 intron bgm + chr2L 14017882 intron bgm + chr2L_7_14015001 chr2L_14015001 RAL-158 119 chr2L 14564204 14564229 chr2L 14564269 14564305 8 63 2.5 2.5 2.5 2.3 101 chr2L 14564204 intergenic CG3473 - chr2L 14564254 intergenic not near genes chr2L 14564305 intergenic not near genes chr2L_8_14560001 chr2L_14560001 RAL-158 120 chr2L 14771842 14771862 chr2L 14771925 14771945 4 82 0.0 4.0 2.0 1.3 103 chr2L 14771842 intergenic not near genes chr2L 14771894 intergenic not near genes chr2L 14771945 intergenic not near genes chr2L_4_14770001 chr2L_14770001 RAL-158 121 chr2L 14842412 14842443 chr2L 14842496 14842522 7 83 1.0 2.5 1.8 2.5 110 chr2L 14842412 exon CG42682 + chr2L 14842467 intron CG42682 + chr2L 14842522 intron CG42682 + chr2L_7_14840001 chr2L_14840001 RAL-158 122 chr2L 15044709 15044726 chr2L 15044784 15044789 4 72 2.0 0.0 1.0 2.0 80 chr2L 15044709 intergenic ck - chr2L 15044749 intergenic ck - chr2L 15044789 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-158 123 chr2L 15204222 15204306 chr2L 15204299 15204587 4 230 1.0 1.5 1.2 1.8 365 chr2L 15204222 intergenic CR43357 + chr2L 15204404 intergenic CR43357 + chr2L 15204587 intergenic not near genes chr2L_4_15200001 chr2L_15200001 RAL-158 124 chr2L 15313744 15313753 chr2L 15313863 15313874 4 120 5.5 4.0 4.8 0.7 130 chr2L 15313744 intergenic not near genes chr2L 15313809 intergenic not near genes chr2L 15313874 intergenic not near genes chr2L_4_15310001 chr2L_15310001 RAL-158 125 chr2L 15313754 15313774 chr2L 15313861 15313875 9 110 2.0 4.0 3.0 2.2 121 chr2L 15313754 intergenic not near genes chr2L 15313814 intergenic not near genes chr2L 15313875 intergenic not near genes chr2L_9_15310001 chr2L_15310001 RAL-158 126 chr2L 15500634 15500650 chr2L 15506157 15506173 8 5518 4.5 19.0 11.8 0.6 5539 chr2L 15500634 intron lace + chr2L 15503404 exon lace + chr2L 15506173 intergenic not near genes chr2L_8_15500001 chr2L_15500001 RAL-158 127 chr2L 15777018 15777034 chr2L 15932852 15932879 7 155838 12.5 10.5 11.5 0.6 155861 chr2L 15777018 intergenic CG43760 - chr2L 15854948 exon Tektin-A + chr2L 15932879 intron beat-Ib - chr2L_7_15850001 chr2L_15850001 RAL-158 128 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 12.5 8.5 10.5 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-158 129 chr2L 16111206 16111226 chr2L 16111305 16111323 4 95 0.0 1.0 0.5 2.7 117 chr2L 16111206 intergenic not near genes chr2L 16111264 intergenic not near genes chr2L 16111323 intergenic not near genes chr2L_4_16110001 chr2L_16110001 RAL-158 130 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133322 10.5 8.5 9.5 1.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-158 131 chr2L 16217660 16217660 chr2L 18622717 18622719 6 2405058 9.5 17.0 13.2 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-158 132 chr2L 16280259 16280284 chr2L 16281430 16281455 1360 5 1171 3.0 1.0 2.0 1.7 1196 chr2L 16280259 intron crp - chr2L 16280857 intron crp - chr2L 16281455 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-158 133 chr2L 16694129 16694162 chr2L 16694215 16694248 8 80 2.5 4.5 3.5 1.8 119 chr2L 16694129 intron grp + chr2L 16694188 intron grp + chr2L 16694248 intron grp + chr2L_8_16690001 chr2L_16690001 RAL-158 134 chr2L 16791441 16791464 chr2L 16791581 16791584 7 133 1.5 4.0 2.8 1.8 143 chr2L 16791441 intergenic CG17928 + chr2L 16791512 intergenic CG17928 + chr2L 16791584 5` UTR CG17928 + chr2L_7_16790001 chr2L_16790001 RAL-158 135 chr2L 17159856 17159878 chr2L 17159939 17159961 4 83 0.0 2.0 1.0 2.0 105 chr2L 17159856 intron,intron CG34106 +,beat-IIIa + chr2L 17159908 intron,intron CG34106 +,beat-IIIa + chr2L 17159961 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-158 136 chr2L 17273198 17273227 chr2L 17277981 17277990 F-element 5 4775 1.0 3.0 2.0 1.7 4792 chr2L 17273198 intergenic not near genes chr2L 17275594 intergenic not near genes chr2L 17277990 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-158 137 chr2L 17303442 17303465 chr2L 17303620 17303628 4 172 2.0 4.0 3.0 1.0 186 chr2L 17303442 intergenic not near genes chr2L 17303535 intergenic not near genes chr2L 17303628 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-158 138 chr2L 17327911 17327921 chr2L 17327996 17328007 4 86 2.0 5.5 3.8 0.8 96 chr2L 17327911 intergenic not near genes chr2L 17327959 intergenic not near genes chr2L 17328007 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-158 139 chr2L 17773191 17773197 chr2L 17773338 17773339 4 150 2.0 1.0 1.5 1.6 148 chr2L 17773191 intron CadN - chr2L 17773265 intron CadN - chr2L 17773339 intron CadN - chr2L_4_17770001 chr2L_17770001 RAL-158 140 chr2L 17792966 17792972 chr2L 17793304 17793328 4 343 2.0 4.5 3.2 1.0 362 chr2L 17792966 intron,5` UTR CadN2 -,CR43419 + chr2L 17793147 intron,5` UTR CadN2 -,CR43419 + chr2L 17793328 intron,5` UTR CadN2 -,CR43419 + chr2L_4_17790001 chr2L_17790001 RAL-158 141 chr2L 17795313 17795335 chr2L 17795417 17795418 8 99 1.5 1.5 1.5 3.2 105 chr2L 17795313 intron CadN2 - chr2L 17795366 intron CadN2 - chr2L 17795418 intron CadN2 - chr2L_8_17795001 chr2L_17795001 RAL-158 142 chr2L 18014680 18014692 chr2L 18014802 18014822 4 126 2.0 3.0 2.5 1.1 142 chr2L 18014680 intron rdo + chr2L 18014751 intron rdo + chr2L 18014822 intron rdo + chr2L_4_18010001 chr2L_18010001 RAL-158 143 chr2L 18087625 18087643 chr2L 18087809 18087827 4 183 0.5 1.5 1.0 2.0 202 chr2L 18087625 intergenic not near genes chr2L 18087726 intergenic not near genes chr2L 18087827 intergenic not near genes chr2L_4_18085001 chr2L_18085001 RAL-158 144 chr2L 18578737 18578767 chr2L 18578821 18578855 4 82 1.5 3.5 2.5 1.1 118 chr2L 18578737 intron Pde11 - chr2L 18578796 intron Pde11 - chr2L 18578855 intron Pde11 - chr2L_4_18575001 chr2L_18575001 RAL-158 145 chr2L 18699204 18699238 chr2L 18699281 18699315 12 72 4.0 4.5 4.2 2.3 111 chr2L 18699204 exon CG10341 + chr2L 18699260 exon CG10341 + chr2L 18699315 exon CG10341 + chr2L_12_18695001 chr2L_18695001 RAL-158 146 chr2L 19144945 19145194 chr2L 19145023 19145280 7 80 5.0 1.0 3.0 1.8 335 chr2L 19144945 intron brat + chr2L 19145112 intron brat + chr2L 19145280 intron brat + chr2L_7_19145001 chr2L_19145001 RAL-158 147 chr2L 19214584 19214609 chr2L 19214665 19214690 5 78 1.5 0.5 1.0 2.5 106 chr2L 19214584 intergenic not near genes chr2L 19214637 intergenic not near genes chr2L 19214690 intergenic not near genes chr2L_5_19210001 chr2L_19210001 RAL-158 148 chr2L 19331125 19331153 chr2L 19331227 19331255 5 97 1.0 5.0 3.0 1.2 130 chr2L 19331125 intergenic not near genes chr2L 19331190 intergenic not near genes chr2L 19331255 intergenic not near genes chr2L_5_19330001 chr2L_19330001 RAL-158 149 chr2L 19337563 19337593 chr2L 19338130 19338136 6 557 1.5 2.0 1.8 2.1 573 chr2L 19337563 intergenic not near genes chr2L 19337850 intergenic not near genes chr2L 19338136 intergenic not near genes chr2L_6_19335001 chr2L_19335001 RAL-158 150 chr2L 19489827 19489860 chr2L 19489917 19489922 12 86 2.5 4.0 3.2 2.9 95 chr2L 19489827 exon CG10194 - chr2L 19489874 exon CG10194 - chr2L 19489922 intron CG10194 - chr2L_12_19485001 chr2L_19485001 RAL-158 151 chr2L 19544625 19544630 chr2L 19544661 19544675 5 45 3.5 4.5 4.0 1.0 50 chr2L 19544625 exon ref(2)P + chr2L 19544650 exon ref(2)P + chr2L 19544675 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-158 152 chr2L 19561350 19561367 chr2L 19561489 19561508 7 138 0.5 6.0 3.2 1.7 158 chr2L 19561350 exon Tep5 + chr2L 19561429 exon Tep5 + chr2L 19561508 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-158 153 chr2L 19562547 19562562 chr2L 19562610 19562615 6 69 0.0 1.5 0.8 3.3 68 chr2L 19562547 intron Tep5 + chr2L 19562581 intron Tep5 + chr2L 19562615 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-158 154 chr2L 19620100 19620118 chr2L 19621088 19621105 jockey 6 988 7.0 3.5 5.2 1.0 1005 chr2L 19620100 intron Lar + chr2L 19620602 intron Lar + chr2L 19621105 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-158 155 chr2L 19689059 19689089 chr2L 19689163 19689172 7 99 1.0 1.0 1.0 3.5 113 chr2L 19689059 intron Lar + chr2L 19689116 intron Lar + chr2L 19689172 intron Lar + chr2L_7_19685001 chr2L_19685001 RAL-158 156 chr2L 19697144 19697164 chr2L 19697232 19697242 5 86 3.0 4.5 3.8 1.0 98 chr2L 19697144 intron Lar + chr2L 19697193 intron Lar + chr2L 19697242 intron Lar + chr2L_5_19695001 chr2L_19695001 RAL-158 157 chr2L 19703535 19703568 chr2L 19712671 19712704 roo 10 9134 5.5 1.5 3.5 2.2 9169 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712704 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-158 158 chr2L 19837283 19837309 chr2L 19837363 19837379 7 79 2.5 4.5 3.5 1.6 96 chr2L 19837283 intron sick + chr2L 19837331 intron sick + chr2L 19837379 intron sick + chr2L_7_19835001 chr2L_19835001 RAL-158 159 chr2L 19911308 19911325 chr2L 19911378 19911413 4 78 1.0 2.0 1.5 1.6 105 chr2L 19911308 intron,3` UTR sick +,CR43097 - chr2L 19911360 intron,3` UTR sick +,CR43097 - chr2L 19911413 intron,3` UTR sick +,CR43097 - chr2L_4_19910001 chr2L_19910001 RAL-158 160 chr2L 19964833 19964868 chr2L 19964919 19964935 8 83 2.5 1.5 2.0 2.7 102 chr2L 19964833 intron CG10680 + chr2L 19964884 exon CG10680 + chr2L 19964935 exon CG10680 + chr2L_8_19960001 chr2L_19960001 RAL-158 161 chr2L 20041438 20041460 chr2L 20041523 20041545 6 85 2.5 5.0 3.8 1.2 107 chr2L 20041438 intron sNPF + chr2L 20041492 intron sNPF + chr2L 20041545 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-158 162 chr2L 20250923 20250933 chr2L 20251001 20251011 7 77 2.0 2.5 2.2 2.2 88 chr2L 20250923 intergenic not near genes chr2L 20250967 intergenic not near genes chr2L 20251011 intergenic not near genes chr2L_7_20250001 chr2L_20250001 RAL-158 163 chr2L 20299412 20299442 chr2L 20299535 20299564 13 119 0.0 1.5 0.8 7.2 152 chr2L 20299412 intergenic not near genes chr2L 20299488 intergenic not near genes chr2L 20299564 intergenic not near genes chr2L_13_20295001 chr2L_20295001 RAL-158 164 chr2L 20303165 20303192 chr2L 20310631 20310659 blood 4 7464 0.0 1.5 0.8 2.2 7494 chr2L 20303165 intergenic not near genes chr2L 20306912 intergenic not near genes chr2L 20310659 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-158 165 chr2L 20322635 20322668 chr2L 20322717 20322729 7 76 2.0 0.5 1.2 3.2 94 chr2L 20322635 intron spir + chr2L 20322682 intron spir + chr2L 20322729 intron spir + chr2L_7_20320001 chr2L_20320001 RAL-158 166 chr2L 20576223 20576249 chr2L 20583690 20583717 blood 5 7468 1.0 1.5 1.2 2.3 7494 chr2L 20576223 intergenic not near genes chr2L 20579970 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-158 167 chr2L 20819112 20819145 chr2L 20819196 20819224 7 82 1.5 1.0 1.2 3.2 112 chr2L 20819112 intergenic not near genes chr2L 20819168 intergenic not near genes chr2L 20819224 intergenic not near genes chr2L_7_20815001 chr2L_20815001 RAL-158 168 chr2L 20821500 20821521 chr2L 20821648 20821663 5 145 3.5 2.5 3.0 1.2 163 chr2L 20821500 intergenic not near genes chr2L 20821582 intergenic not near genes chr2L 20821663 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-158 169 chr2L 20840029 20840056 chr2L 20840237 20840259 6 204 2.0 1.0 1.5 2.4 230 chr2L 20840029 intergenic not near genes chr2L 20840144 intergenic not near genes chr2L 20840259 intergenic CG31676 + chr2L_6_20840001 chr2L_20840001 RAL-158 170 chr2L 20901476 20901487 chr2L 20902640 20902650 1360 5 1164 1.5 1.0 1.2 2.3 1174 chr2L 20901476 intron,intron CG43739 -,sky - chr2L 20902063 intron,intron CG43739 -,sky - chr2L 20902650 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-158 171 chr2L 20967933 20967960 chr2L 20968025 20968053 5 92 2.0 2.5 2.2 1.6 120 chr2L 20967933 intron CG42238 - chr2L 20967993 intron CG42238 - chr2L 20968053 intron CG42238 - chr2L_5_20965001 chr2L_20965001 RAL-158 172 chr2L 20984604 20984636 chr2L 20984685 20984717 10 77 1.0 1.5 1.2 4.5 113 chr2L 20984604 intron CG42238 - chr2L 20984660 intron CG42238 - chr2L 20984717 intron CG42238 - chr2L_10_20980001 chr2L_20980001 RAL-158 173 chr2L 21020274 21020307 chr2L 21023951 21023984 NOF 5 3674 1.5 3.0 2.2 1.6 3710 chr2L 21020274 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-158 174 chr2L 21041136 21041166 chr2L 21049397 21049399 Tirant 5 8255 1.0 1.5 1.2 2.3 8263 chr2L 21041136 intron CG42238 - chr2L 21045268 intron CG42238 - chr2L 21049399 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-158 175 chr2L 21284052 21284085 chr2L 21284525 21284537 8 464 2.0 3.0 2.5 2.3 485 chr2L 21284052 intergenic not near genes chr2L 21284294 intergenic not near genes chr2L 21284537 intergenic not near genes chr2L_8_21280001 chr2L_21280001 RAL-158 176 chr2L 21285650 21285666 chr2L 21285731 21285762 4 83 3.5 2.0 2.8 1.1 112 chr2L 21285650 intergenic Mio - chr2L 21285706 intergenic Mio - chr2L 21285762 intergenic Mio - chr2L_4_21285001 chr2L_21285001 RAL-158 177 chr2L 21396615 21396621 chr2L 21396843 21396856 4 233 1.0 0.5 0.8 2.2 241 chr2L 21396615 intergenic not near genes chr2L 21396736 intergenic not near genes chr2L 21396856 intergenic not near genes chr2L_4_21395001 chr2L_21395001 RAL-158 178 chr2L 21597030 21597063 chr2L 21604774 21604796 roo 4 7737 0.0 0.5 0.2 3.3 7766 chr2L 21597030 intergenic not near genes chr2L 21600913 intergenic not near genes chr2L 21604796 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-158 179 chr2L 21981690 21981715 chr2L 21990846 21990877 roo 4 9157 0.5 3.0 1.8 1.4 9187 chr2L 21981690 exon CG2528 - chr2L 21986284 intron CG2528 - chr2L 21990877 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-158 180 chr2L 22192224 22192249 chr2L 22192610 22192629 7 387 1.0 2.0 1.5 2.8 405 chr2L 22192224 intron Ir40a - chr2L 22192426 intron Ir40a - chr2L 22192629 intron Ir40a - chr2L_7_22190001 chr2L_22190001 RAL-158 181 chr2L 22545983 22546010 chr2L 22546079 22546106 7 96 2.5 3.0 2.8 1.8 123 chr2L 22545983 intron CG17490 + chr2L 22546044 intron CG17490 + chr2L 22546106 intron CG17490 + chr2L_7_22545001 chr2L_22545001 RAL-158 182 chr2L 22679802 22679821 chr2L 22684574 22684589 F-element 7 4770 1.0 3.5 2.2 2.2 4787 chr2L 22679802 intron CG40006 - chr2L 22682196 intron CG40006 - chr2L 22684589 intron CG40006 - chr2L_7_22680001 chr2L_22680001 RAL-158 183 chr2L 22693926 22693931 chr2L 22694012 22694016 4 86 2.0 2.5 2.2 1.2 90 chr2L 22693926 intron CG40006 - chr2L 22693971 intron CG40006 - chr2L 22694016 intron CG40006 - chr2L_4_22690001 chr2L_22690001 RAL-158 184 chr2R 552751 552789 chr2R 553969 553983 1360 7 1201 2.0 3.5 2.8 1.8 1232 chr2R 552751 intron CG40378 + chr2R 553367 intron CG40378 + chr2R 553983 intron CG40378 + chr2R_7_550001 chr2R_550001 RAL-158 185 chr2R 2498984 2499011 chr2R 2508131 2508143 roo 6 9144 2.5 1.0 1.8 2.1 9159 chr2R 2498984 intron MFS17 - chr2R 2503564 intron MFS17 - chr2R 2508143 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-158 186 chr2R 2508319 2508335 chr2R 2508452 2508473 5 137 0.0 3.5 1.8 1.8 154 chr2R 2508319 intron MFS17 - chr2R 2508396 intron MFS17 - chr2R 2508473 intron MFS17 - chr2R_5_2505001 chr2R_2505001 RAL-158 187 chr2R 3818932 3818957 chr2R 3819048 3819056 7 110 5.0 1.5 3.2 1.7 124 chr2R 3818932 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819056 intergenic not near genes chr2R_7_3815001 chr2R_3815001 RAL-158 188 chr2R 4603338 4603375 chr2R 4603421 4603435 6 76 2.0 4.0 3.0 1.5 97 chr2R 4603338 intron p120ctn + chr2R 4603386 intron p120ctn + chr2R 4603435 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-158 189 chr2R 4624361 4624384 chr2R 4624481 4624493 6 115 2.5 3.5 3.0 1.5 132 chr2R 4624361 intergenic not near genes chr2R 4624427 intergenic not near genes chr2R 4624493 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-158 190 chr2R 4933368 4933388 chr2R 4933919 4933952 8 558 3.0 2.5 2.8 2.1 584 chr2R 4933368 intron Ir41a + chr2R 4933660 intron Ir41a + chr2R 4933952 intron Ir41a + chr2R_8_4930001 chr2R_4930001 RAL-158 191 chr2R 5019293 5019309 chr2R 5019363 5019393 4 77 1.0 0.5 0.8 2.2 100 chr2R 5019293 intron Ir41a + chr2R 5019343 intron Ir41a + chr2R 5019393 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-158 192 chr2R 5087174 5087213 chr2R 5087277 5087302 9 101 4.0 4.5 4.2 1.7 128 chr2R 5087174 intergenic not near genes chr2R 5087238 intergenic not near genes chr2R 5087302 intergenic not near genes chr2R_9_5085001 chr2R_5085001 RAL-158 193 chr2R 5472365 5472386 chr2R 5472459 5472480 6 94 3.0 4.5 3.8 1.2 115 chr2R 5472365 intron CG30440 - chr2R 5472422 intron CG30440 - chr2R 5472480 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-158 194 chr2R 5794231 5794261 chr2R 5794359 5794389 5 124 2.0 0.5 1.2 2.3 158 chr2R 5794231 intergenic not near genes chr2R 5794310 intergenic not near genes chr2R 5794389 intergenic not near genes chr2R_5_5790001 chr2R_5790001 RAL-158 195 chr2R 5859984 5860013 chr2R 5860089 5860115 8 107 2.5 2.0 2.2 2.5 131 chr2R 5859984 3` UTR dpr12 + chr2R 5860050 3` UTR dpr12 + chr2R 5860115 3` UTR dpr12 + chr2R_8_5860001 chr2R_5860001 RAL-158 196 chr2R 5869277 5869304 chr2R 5874353 5874364 flea 4 5072 1.0 1.5 1.2 1.8 5087 chr2R 5869277 intergenic not near genes chr2R 5871820 intergenic not near genes chr2R 5874364 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-158 197 chr2R 5878926 5878953 chr2R 5879006 5879033 5 77 0.5 0.5 0.5 3.3 107 chr2R 5878926 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879033 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-158 198 chr2R 6096732 6096751 chr2R 6101910 6101949 BS 12 5187 3.5 4.0 3.8 2.5 5217 chr2R 6096732 intron EcR - chr2R 6099340 intron EcR - chr2R 6101949 intron EcR - chr2R_12_6095001 chr2R_6095001 RAL-158 199 chr2R 6538380 6538412 chr2R 6538456 6538490 6 75 0.5 0.5 0.5 4.0 110 chr2R 6538380 intron jing + chr2R 6538435 intron jing + chr2R 6538490 intron jing + chr2R_6_6535001 chr2R_6535001 RAL-158 200 chr2R 6806797 6806811 chr2R 6806876 6806893 6 83 2.5 0.5 1.5 2.4 96 chr2R 6806797 intergenic not near genes chr2R 6806845 intergenic not near genes chr2R 6806893 intergenic not near genes chr2R_6_6805001 chr2R_6805001 RAL-158 201 chr2R 7139945 7139953 chr2R 7141436 7141445 hopper2 5 1490 6.5 9.0 7.8 0.6 1500 chr2R 7139945 intergenic not near genes chr2R 7140695 intergenic not near genes chr2R 7141445 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-158 202 chr2R 7732106 7732126 chr2R 7732184 7732189 4 72 4.0 2.0 3.0 1.0 83 chr2R 7732106 intron CG18812 - chr2R 7732148 intron CG18812 - chr2R 7732189 intron CG18812 - chr2R_4_7730001 chr2R_7730001 RAL-158 203 chr2R 7760287 7760305 chr2R 7760424 7760441 9 131 3.0 7.0 5.0 1.5 154 chr2R 7760287 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760441 intron,intron CG30497 -,CG45093 - chr2R_9_7760001 chr2R_7760001 RAL-158 204 chr2R 7815683 7815700 chr2R 7822140 7822169 Burdock 5 6464 1.0 2.5 1.8 1.8 6486 chr2R 7815683 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822169 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-158 205 chr2R 7869189 7869222 chr2R 7873975 7873993 Doc 7 4778 3.5 4.5 4.0 1.4 4804 chr2R 7869189 intron Dgk - chr2R 7871591 intron Dgk - chr2R 7873993 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-158 206 chr2R 7919978 7920000 chr2R 7924502 7924524 4 4530 12.0 33.5 22.8 0.2 4546 chr2R 7919978 intron Cul1 + chr2R 7922251 exon Or43b - chr2R 7924524 exon Kdm4A - chr2R_4_7920001 chr2R_7920001 RAL-158 207 chr2R 8277651 8277667 chr2R 8277731 8277741 15 89 3.5 3.5 3.5 3.3 90 chr2R 8277651 5` UTR CR44280 + chr2R 8277696 5` UTR CR44280 + chr2R 8277741 5` UTR CR44280 + chr2R_15_8275001 chr2R_8275001 RAL-158 208 chr2R 8398209 8398242 chr2R 8402990 8402999 Doc 5 4769 5.0 2.0 3.5 1.1 4790 chr2R 8398209 intron CG2121 - chr2R 8400604 intron CG2121 - chr2R 8402999 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-158 209 chr2R 8414290 8414316 chr2R 8414373 8414399 5 83 5.5 6.0 5.8 0.7 109 chr2R 8414290 intergenic not near genes chr2R 8414344 intergenic not near genes chr2R 8414399 intergenic not near genes chr2R_5_8410001 chr2R_8410001 RAL-158 210 chr2R 8419366 8419385 chr2R 8419449 8419461 5 81 2.0 2.5 2.2 1.6 95 chr2R 8419366 intergenic not near genes chr2R 8419414 intergenic not near genes chr2R 8419461 intergenic not near genes chr2R_5_8415001 chr2R_8415001 RAL-158 211 chr2R 8452032 8452062 chr2R 8452115 8452145 8 80 2.0 1.5 1.8 2.9 113 chr2R 8452032 intergenic Mal-A1 - chr2R 8452088 intergenic Mal-A1 - chr2R 8452145 intergenic Mal-A1 - chr2R_8_8450001 chr2R_8450001 RAL-158 212 chr2R 8556515 8556544 chr2R 8556591 8556619 6 74 1.5 1.5 1.5 2.4 104 chr2R 8556515 intergenic not near genes chr2R 8556567 intergenic not near genes chr2R 8556619 intergenic not near genes chr2R_6_8555001 chr2R_8555001 RAL-158 213 chr2R 9151307 9151330 chr2R 9157770 9157790 Burdock 4 6460 1.0 0.0 0.5 2.7 6483 chr2R 9151307 3` UTR CG30345 + chr2R 9154548 intergenic not near genes chr2R 9157790 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-158 214 chr2R 9212709 9212725 chr2R 9213179 9213192 roo 8 478 4.0 7.0 5.5 1.2 483 chr2R 9212709 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213192 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-158 215 chr2R 9227876 9227904 chr2R 9227963 9227968 6 83 1.0 0.5 0.8 3.3 92 chr2R 9227876 3` UTR hig - chr2R 9227922 3` UTR hig - chr2R 9227968 3` UTR hig - chr2R_6_9225001 chr2R_9225001 RAL-158 216 chr2R 9300038 9300064 chr2R 9300125 9300138 5 81 3.0 0.5 1.8 1.8 100 chr2R 9300038 3` UTR Drep-2 + chr2R 9300088 3` UTR Drep-2 + chr2R 9300138 3` UTR Drep-2 + chr2R_5_9300001 chr2R_9300001 RAL-158 217 chr2R 9404881 9404914 chr2R 9405365 9405385 10 479 3.0 2.5 2.8 2.6 504 chr2R 9404881 intron wun - chr2R 9405133 intron wun - chr2R 9405385 intron wun - chr2R_10_9405001 chr2R_9405001 RAL-158 218 chr2R 9510684 9510698 chr2R 9510782 9510813 5 111 0.5 1.5 1.0 2.5 129 chr2R 9510684 intron brp + chr2R 9510748 intron brp + chr2R 9510813 intron brp + chr2R_5_9510001 chr2R_9510001 RAL-158 219 chr2R 9667250 9667283 chr2R 9667326 9667359 5 76 3.5 2.0 2.8 1.3 109 chr2R 9667250 intron Mmp2 - chr2R 9667304 intron Mmp2 - chr2R 9667359 intron Mmp2 - chr2R_5_9665001 chr2R_9665001 RAL-158 220 chr2R 9759384 9759413 chr2R 9759567 9759596 6 182 0.0 2.0 1.0 3.0 212 chr2R 9759384 intron trpl + chr2R 9759490 intron trpl + chr2R 9759596 intron trpl + chr2R_6_9755001 chr2R_9755001 RAL-158 221 chr2R 9791647 9791679 chr2R 9791746 9791760 9 91 2.5 5.5 4.0 1.8 113 chr2R 9791647 intron CG1688 - chr2R 9791704 intron CG1688 - chr2R 9791760 intron CG1688 - chr2R_9_9790001 chr2R_9790001 RAL-158 222 chr2R 9793196 9793231 chr2R 9793295 9793330 4 94 1.5 0.5 1.0 2.0 134 chr2R 9793196 5` UTR CG1688 - chr2R 9793263 5` UTR CG1688 - chr2R 9793330 5` UTR,5` UTR CG1688 -,CG1698 + chr2R_4_9790001 chr2R_9790001 RAL-158 223 chr2R 9871044 9871074 chr2R 9871530 9871559 roo 4 486 1.0 4.5 2.8 1.1 515 chr2R 9871044 intron cbx - chr2R 9871302 intron cbx - chr2R 9871559 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-158 224 chr2R 9923862 9923883 chr2R 9923943 9923950 4 77 2.0 4.0 3.0 1.0 88 chr2R 9923862 intron Mef2 - chr2R 9923906 intron Mef2 - chr2R 9923950 intron Mef2 - chr2R_4_9920001 chr2R_9920001 RAL-158 225 chr2R 9945435 9945469 chr2R 9945631 9945664 BS 4 189 3.5 1.5 2.5 1.1 229 chr2R 9945435 intron Mef2 - chr2R 9945550 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-158 226 chr2R 10004606 10004625 chr2R 10004688 10004724 8 85 3.5 3.5 3.5 1.8 118 chr2R 10004606 intron Pka-R2 - chr2R 10004665 intron Pka-R2 - chr2R 10004724 intron Pka-R2 - chr2R_8_10000001 chr2R_10000001 RAL-158 227 chr2R 10005861 10005880 chr2R 10007016 10007031 1360 5 1155 4.0 5.0 4.5 0.9 1170 chr2R 10005861 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007031 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-158 228 chr2R 10017658 10017674 chr2R 10017737 10017748 4 74 2.5 4.0 3.2 1.0 90 chr2R 10017658 intron Pka-R2 - chr2R 10017703 intron Pka-R2 - chr2R 10017748 intron Pka-R2 - chr2R_4_10015001 chr2R_10015001 RAL-158 229 chr2R 10020861 10020877 chr2R 10020936 10020937 7 73 0.5 1.5 1.0 3.5 76 chr2R 10020861 intron Pka-R2 - chr2R 10020899 intron Pka-R2 - chr2R 10020937 intron Pka-R2 - chr2R_7_10020001 chr2R_10020001 RAL-158 230 chr2R 10319716 10319742 chr2R 10319808 10319834 7 91 2.5 3.0 2.8 1.8 118 chr2R 10319716 intron Ndg + chr2R 10319775 intron Ndg + chr2R 10319834 intron Ndg + chr2R_7_10315001 chr2R_10315001 RAL-158 231 chr2R 10349908 10349944 chr2R 10349987 10349989 6 68 1.5 0.5 1.0 3.0 81 chr2R 10349908 intron CG42732 - chr2R 10349948 intron CG42732 - chr2R 10349989 intron CG42732 - chr2R_6_10345001 chr2R_10345001 RAL-158 232 chr2R 10350981 10351004 chr2R 10351058 10351076 9 77 0.0 1.0 0.5 6.0 95 chr2R 10350981 intron CG42732 - chr2R 10351028 intron CG42732 - chr2R 10351076 intron CG42732 - chr2R_9_10350001 chr2R_10350001 RAL-158 233 chr2R 10352673 10352703 chr2R 10352750 10352780 4 77 2.0 1.0 1.5 1.6 107 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352780 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-158 234 chr2R 10454106 10454129 chr2R 10454179 10454205 6 71 2.0 2.5 2.2 1.9 99 chr2R 10454106 intron,intron Galphao +,Cyp49a1 - chr2R 10454156 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-158 235 chr2R 10469020 10469055 chr2R 10469146 10469181 11 124 1.5 3.0 2.2 3.4 161 chr2R 10469020 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-158 236 chr2R 10572009 10572044 chr2R 10572201 10572236 7 192 2.5 3.0 2.8 1.8 227 chr2R 10572009 intron psq + chr2R 10572122 intron psq + chr2R 10572236 intron psq + chr2R_7_10570001 chr2R_10570001 RAL-158 237 chr2R 10577957 10577992 chr2R 10578103 10578146 5 142 1.5 1.0 1.2 2.3 189 chr2R 10577957 intron psq + chr2R 10578052 intron psq + chr2R 10578146 intron psq + chr2R_5_10575001 chr2R_10575001 RAL-158 238 chr2R 10653206 10653228 chr2R 10653283 10653306 5 71 2.0 1.0 1.5 2.0 100 chr2R 10653206 intergenic not near genes chr2R 10653256 intergenic not near genes chr2R 10653306 intergenic not near genes chr2R_5_10650001 chr2R_10650001 RAL-158 239 chr2R 10827342 10827357 chr2R 10827421 10827423 7 83 3.0 2.0 2.5 2.0 81 chr2R 10827342 exon CG12325 + chr2R 10827382 3` UTR CG12325 + chr2R 10827423 3` UTR CG12325 + chr2R_7_10825001 chr2R_10825001 RAL-158 240 chr2R 10992945 10992982 chr2R 10993031 10993067 4 84 1.0 3.5 2.2 1.2 122 chr2R 10992945 intron luna - chr2R 10993006 intron luna - chr2R 10993067 intron luna - chr2R_4_10990001 chr2R_10990001 RAL-158 241 chr2R 11009816 11009847 chr2R 11018987 11019006 roo 5 9169 1.5 1.5 1.5 2.0 9190 chr2R 11009816 intron luna - chr2R 11014411 intron luna - chr2R 11019006 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-158 242 chr2R 11472647 11472677 chr2R 11473844 11473874 pogo 8 1193 3.0 1.0 2.0 2.7 1227 chr2R 11472647 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-158 243 chr2R 11668037 11668053 chr2R 11668303 11668318 4 268 1.5 1.5 1.5 1.6 281 chr2R 11668037 intron,intron Roc2 -,Tret1-1 + chr2R 11668178 intron,intron Roc2 -,Tret1-1 + chr2R 11668318 intron,intron Roc2 -,Tret1-1 + chr2R_4_11665001 chr2R_11665001 RAL-158 244 chr2R 11775942 11775966 chr2R 11776019 11776048 4 81 0.5 4.0 2.2 1.2 106 chr2R 11775942 intron ths + chr2R 11775995 intron ths + chr2R 11776048 intron ths + chr2R_4_11775001 chr2R_11775001 RAL-158 245 chr2R 11822981 11822998 chr2R 11823057 11823059 4 68 1.5 2.5 2.0 1.3 78 chr2R 11822981 intergenic not near genes chr2R 11823020 intergenic not near genes chr2R 11823059 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-158 246 chr2R 8518777 8518803 chr2R 12066171 12066197 8 3547395 2.0 14.0 8.0 0.9 3547420 chr2R 8518777 intron mtt - chr2R 10292487 intron CAP + chr2R 12066197 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-158 247 chr2R 12120412 12120431 chr2R 12120494 12120506 4 80 4.5 3.5 4.0 0.8 94 chr2R 12120412 intergenic not near genes chr2R 12120459 intergenic not near genes chr2R 12120506 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-158 248 chr2R 12124835 12124852 chr2R 12124919 12124934 4 83 2.5 1.5 2.0 1.3 99 chr2R 12124835 intergenic not near genes chr2R 12124884 intergenic not near genes chr2R 12124934 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-158 249 chr2R 12187472 12187478 chr2R 12190088 12190094 9 2617 62.5 77.0 69.8 0.1 2622 chr2R 12187472 exon Cyp6g1 + chr2R 12188783 exon Cyp6g2 - chr2R 12190094 exon Cyp6g2 - chr2R_9_12185001 chr2R_12185001 RAL-158 250 chr2R 12187471 12187508 chr2R 12190095 12190124 28 2625 96.0 69.0 82.5 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_28_12185001 chr2R_12185001 RAL-158 251 chr2R 12481148 12481170 chr2R 12482940 12482941 roo 7 1791 2.0 2.5 2.2 2.2 1793 chr2R 12481148 exon Dh44-R2 + chr2R 12482044 intron Dh44-R2 + chr2R 12482941 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-158 252 chr2R 12501700 12501727 chr2R 12503857 12503877 Rt1c 7 2154 1.0 4.5 2.8 1.8 2177 chr2R 12501700 intron fdl - chr2R 12502788 intron fdl - chr2R 12503877 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-158 253 chr2R 12536005 12536035 chr2R 12536098 12536119 10 90 2.0 3.5 2.8 2.6 114 chr2R 12536005 intron fra + chr2R 12536062 intron fra + chr2R 12536119 intron fra + chr2R_10_12535001 chr2R_12535001 RAL-158 254 chr2R 12597953 12597989 chr2R 12598053 12598084 8 97 2.0 0.5 1.2 3.6 131 chr2R 12597953 intron Amph + chr2R 12598018 intron Amph + chr2R 12598084 intron Amph + chr2R_8_12595001 chr2R_12595001 RAL-158 255 chr2R 12819451 12819470 chr2R 12824520 12824539 jockey 4 5069 1.0 6.5 3.8 0.8 5088 chr2R 12819451 intergenic not near genes chr2R 12821995 intergenic not near genes chr2R 12824539 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-158 256 chr2R 13136844 13136866 chr2R 13141642 13141657 Doc 5 4797 3.0 4.0 3.5 1.1 4813 chr2R 13136844 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141657 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-158 257 chr2R 13573783 13573820 chr2R 13573953 13573990 14 164 2.5 2.5 2.5 4.0 207 chr2R 13573783 exon CG42808 - chr2R 13573886 exon CG42808 - chr2R 13573990 exon CG42808 - chr2R_14_13570001 chr2R_13570001 RAL-158 258 chr2R 13580519 13580529 chr2R 13580843 13580879 jockey 4 336 0.0 2.0 1.0 2.0 360 chr2R 13580519 3` UTR CG6191 - chr2R 13580699 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-158 259 chr2R 13721217 13721229 chr2R 13721287 13721293 5 71 4.5 6.5 5.5 0.8 76 chr2R 13721217 intron fas + chr2R 13721255 intron fas + chr2R 13721293 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-158 260 chr2R 13751293 13751322 chr2R 13751363 13751396 7 74 3.0 3.5 3.2 1.7 103 chr2R 13751293 intergenic not near genes chr2R 13751344 intergenic not near genes chr2R 13751396 intergenic not near genes chr2R_7_13750001 chr2R_13750001 RAL-158 261 chr2R 13905615 13905636 chr2R 13907594 13907599 Rt1a 5 1972 1.0 4.5 2.8 1.3 1984 chr2R 13905615 intron shot - chr2R 13906607 intron shot - chr2R 13907599 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-158 262 chr2R 14086804 14086818 chr2R 14086941 14086962 4 142 3.5 2.0 2.8 1.1 158 chr2R 14086804 intron Prosap - chr2R 14086883 intron Prosap - chr2R 14086962 intron Prosap - chr2R_4_14085001 chr2R_14085001 RAL-158 263 chr2R 14266763 14266794 chr2R 14266838 14266856 4 71 1.0 3.5 2.2 1.2 93 chr2R 14266763 intron CG8547 - chr2R 14266810 intron CG8547 - chr2R 14266856 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-158 264 chr2R 14393864 14393898 chr2R 14393949 14393963 7 80 3.0 4.0 3.5 1.6 99 chr2R 14393864 intergenic not near genes chr2R 14393914 intergenic not near genes chr2R 14393963 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-158 265 chr2R 14467309 14467322 chr2R 14476467 14476480 roo 4 9158 3.5 4.5 4.0 0.8 9171 chr2R 14467309 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476480 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-158 266 chr2R 14566979 14566996 chr2R 14567076 14567093 5 94 2.5 4.0 3.2 1.2 114 chr2R 14566979 intron ttv + chr2R 14567036 intron ttv + chr2R 14567093 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-158 267 chr2R 14707072 14707092 chr2R 14707152 14707163 4 78 0.0 0.0 0.0 4.0 91 chr2R 14707072 intron mspo - chr2R 14707118 intron mspo - chr2R 14707163 intron mspo - chr2R_4_14705001 chr2R_14705001 RAL-158 268 chr2R 14917850 14917871 chr2R 14917935 14917956 5 85 3.0 1.0 2.0 1.7 106 chr2R 14917850 intron CG10249 - chr2R 14917903 intron CG10249 - chr2R 14917956 intron CG10249 - chr2R_5_14915001 chr2R_14915001 RAL-158 269 chr2R 15066493 15066528 chr2R 15066586 15066590 6 75 5.0 2.0 3.5 1.3 97 chr2R 15066493 intergenic not near genes chr2R 15066542 intergenic not near genes chr2R 15066590 intergenic not near genes chr2R_6_15065001 chr2R_15065001 RAL-158 270 chr2R 15133483 15133506 chr2R 15133562 15133585 5 74 1.0 1.0 1.0 2.5 102 chr2R 15133483 intron chn + chr2R 15133534 intron chn + chr2R 15133585 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-158 271 chr2R 15315746 15315753 chr2R 15315822 15315830 4 77 1.0 1.0 1.0 2.0 84 chr2R 15315746 exon mus210 + chr2R 15315788 exon mus210 + chr2R 15315830 exon mus210 + chr2R_4_15315001 chr2R_15315001 RAL-158 272 chr2R 15506466 15506483 chr2R 15506752 15506769 7 286 0.0 1.5 0.8 3.9 303 chr2R 15506466 intergenic Ir52d +,Ir52c + chr2R 15506618 exon Ir52d + chr2R 15506769 exon Ir52d + chr2R_7_15505001 chr2R_15505001 RAL-158 273 chr2R 15700242 15700270 chr2R 15700356 15700385 7 113 1.0 3.5 2.2 2.2 143 chr2R 15700242 intron,5` UTR CG30080 -,CG42662 - chr2R 15700314 intron,5` UTR CG30080 -,CG42662 - chr2R 15700385 intron,5` UTR CG30080 -,CG42662 - chr2R_7_15700001 chr2R_15700001 RAL-158 274 chr2R 15922888 15922895 chr2R 15922980 15922985 4 90 1.5 3.5 2.5 1.1 97 chr2R 15922888 intergenic bdg - chr2R 15922936 intergenic bdg - chr2R 15922985 intergenic bdg - chr2R_4_15920001 chr2R_15920001 RAL-158 275 chr2R 16788207 16788239 chr2R 16788324 16788356 10 114 9.0 10.0 9.5 1.0 149 chr2R 16788207 exon CG5522 + chr2R 16788282 intron CG5522 + chr2R 16788356 exon CG5522 + chr2R_10_16785001 chr2R_16785001 RAL-158 276 chr2R 17236508 17236537 chr2R 17241712 17241741 copia 7 5204 1.0 1.5 1.2 3.2 5233 chr2R 17236508 intron mbl + chr2R 17239124 intron mbl + chr2R 17241741 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-158 277 chr2R 17389269 17389300 chr2R 17389360 17389386 6 89 1.5 2.5 2.0 2.0 117 chr2R 17389269 intergenic CR44344 - chr2R 17389328 intergenic CR44344 - chr2R 17389386 intergenic CR44344 - chr2R_6_17385001 chr2R_17385001 RAL-158 278 chr2R 17661549 17661580 chr2R 17661628 17661659 12 79 2.5 1.5 2.0 4.0 110 chr2R 17661549 intron CCHa1-R - chr2R 17661604 intron CCHa1-R - chr2R 17661659 intron CCHa1-R - chr2R_12_17660001 chr2R_17660001 RAL-158 279 chr2R 17784029 17784054 chr2R 17784270 17784288 pogo 9 237 2.5 5.0 3.8 1.9 259 chr2R 17784029 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784288 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-158 280 chr2R 18308282 18308316 chr2R 18308388 18308422 8 106 2.0 1.5 1.8 2.9 140 chr2R 18308282 intron sbb - chr2R 18308352 intron sbb - chr2R 18308422 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-158 281 chr2R 18376731 18376747 chr2R 18376816 18376817 5 85 1.0 3.5 2.2 1.6 86 chr2R 18376731 intergenic not near genes chr2R 18376774 intergenic not near genes chr2R 18376817 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-158 282 chr2R 18393708 18393713 chr2R 18394288 18394293 4 580 1.5 4.0 2.8 1.1 585 chr2R 18393708 exon Idgf5 + chr2R 18394000 exon Idgf5 + chr2R 18394293 exon Idgf5 + chr2R_4_18390001 chr2R_18390001 RAL-158 283 chr2R 18435752 18435768 chr2R 18435820 18435853 9 74 1.5 1.0 1.2 4.1 101 chr2R 18435752 intron CG30118 - chr2R 18435802 intron CG30118 - chr2R 18435853 intron CG30118 - chr2R_9_18435001 chr2R_18435001 RAL-158 284 chr2R 18526601 18526615 chr2R 18526678 18526697 4 81 4.5 2.0 3.2 1.0 96 chr2R 18526601 intergenic CG43066 + chr2R 18526649 intergenic CG43066 + chr2R 18526697 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-158 285 chr2R 18590866 18590901 chr2R 18600017 18600036 roo 9 9142 1.0 1.0 1.0 4.5 9170 chr2R 18590866 intron GEFmeso - chr2R 18595451 intron GEFmeso - chr2R 18600036 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-158 286 chr2R 18646413 18646437 chr2R 18646558 18646576 4 137 2.0 2.0 2.0 1.3 163 chr2R 18646413 intron SP2637 - chr2R 18646494 intron SP2637 - chr2R 18646576 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-158 287 chr2R 18726908 18727096 chr2R 18726971 18727269 15 119 5.0 3.0 4.0 3.0 361 chr2R 18726908 intron Hs3st-A + chr2R 18727088 intron Hs3st-A + chr2R 18727269 intron Hs3st-A + chr2R_15_18725001 chr2R_18725001 RAL-158 288 chr2R 18785914 18785947 chr2R 18785992 18786020 8 75 3.5 2.0 2.8 2.1 106 chr2R 18785914 intron CG15080 + chr2R 18785967 intron CG15080 + chr2R 18786020 intron CG15080 + chr2R_8_18785001 chr2R_18785001 RAL-158 289 chr2R 19012951 19012969 chr2R 19013031 19013063 4 85 1.0 0.0 0.5 2.7 112 chr2R 19012951 intergenic not near genes chr2R 19013007 intergenic not near genes chr2R 19013063 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-158 290 chr2R 19203320 19203330 chr2R 19203736 19203746 4 416 18.0 27.0 22.5 0.2 426 chr2R 19203320 intron hppy + chr2R 19203533 intron hppy + chr2R 19203746 intron hppy + chr2R_4_19200001 chr2R_19200001 RAL-158 291 chr2R 19555581 19555606 chr2R 19555663 19555690 4 83 2.5 2.5 2.5 1.1 109 chr2R 19555581 intron sm - chr2R 19555636 intron sm - chr2R 19555690 intron sm - chr2R_4_19555001 chr2R_19555001 RAL-158 292 chr2R 19914846 19914861 chr2R 19922258 19922273 mdg1 5 7409 3.0 2.0 2.5 1.4 7427 chr2R 19914846 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922273 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-158 293 chr2R 19957433 19957457 chr2R 19962635 19962659 copia 5 5199 3.5 2.5 3.0 1.2 5226 chr2R 19957433 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962659 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-158 294 chr2R 20018303 20018328 chr2R 20018384 20018408 4 76 3.0 2.0 2.5 1.1 105 chr2R 20018303 intergenic not near genes chr2R 20018356 intergenic not near genes chr2R 20018408 intergenic not near genes chr2R_4_20015001 chr2R_20015001 RAL-158 295 chr2R 20382346 20382356 chr2R 20382419 20382423 4 73 4.0 3.5 3.8 0.8 77 chr2R 20382346 intergenic not near genes chr2R 20382384 intergenic not near genes chr2R 20382423 intergenic not near genes chr2R_4_20380001 chr2R_20380001 RAL-158 296 chr2R 20408619 20408650 chr2R 20408697 20408728 7 70 3.0 2.0 2.5 2.0 109 chr2R 20408619 intergenic not near genes chr2R 20408674 intergenic not near genes chr2R 20408728 intergenic not near genes chr2R_7_20405001 chr2R_20405001 RAL-158 297 chr2R 20457997 20458021 chr2R 20458068 20458102 9 77 1.5 4.5 3.0 2.2 105 chr2R 20457997 intron CG12484 + chr2R 20458050 intron CG12484 + chr2R 20458102 intron CG12484 + chr2R_9_20455001 chr2R_20455001 RAL-158 298 chr2R 20630389 20630395 chr2R 20630512 20630519 4 129 1.0 1.0 1.0 2.0 130 chr2R 20630389 intron Rcd6 - chr2R 20630454 intron Rcd6 - chr2R 20630519 intron Rcd6 - chr2R_4_20630001 chr2R_20630001 RAL-158 299 chr2R 20739441 20739475 chr2R 20744209 20744233 F-element 8 4764 1.5 4.0 2.8 2.1 4792 chr2R 20739441 intron dpr + chr2R 20741837 intron dpr + chr2R 20744233 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-158 300 chr2R 20931978 20931987 chr2R 20932052 20932063 6 73 1.5 3.0 2.2 1.9 85 chr2R 20931978 intron Rx + chr2R 20932020 intron Rx + chr2R 20932063 intron Rx + chr2R_6_20930001 chr2R_20930001 RAL-158 301 chr2R 21136899 21136916 chr2R 21136983 21136986 4 79 3.0 0.5 1.8 1.4 87 chr2R 21136899 intron Magi - chr2R 21136942 intron Magi - chr2R 21136986 intron Magi - chr2R_4_21135001 chr2R_21135001 RAL-158 302 chr2R 21610219 21610250 chr2R 21610308 21610334 7 89 1.5 3.0 2.2 2.2 115 chr2R 21610219 intron CG15673 - chr2R 21610276 intron CG15673 - chr2R 21610334 intron CG15673 - chr2R_7_21610001 chr2R_21610001 RAL-158 303 chr2R 21700153 21700186 chr2R 21700239 21700272 7 80 1.5 1.0 1.2 3.2 119 chr2R 21700153 intron HmgZ - chr2R 21700212 intron HmgZ - chr2R 21700272 intron HmgZ - chr2R_7_21700001 chr2R_21700001 RAL-158 304 chr2R 21753110 21753112 chr2R 21753573 21753597 roo 4 472 4.0 3.5 3.8 0.8 487 chr2R 21753110 intergenic not near genes chr2R 21753354 intergenic not near genes chr2R 21753597 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-158 305 chr2R 21847597 21847625 chr2R 21847792 21847811 10 188 2.0 0.5 1.2 4.5 214 chr2R 21847597 intergenic not near genes chr2R 21847704 intergenic not near genes chr2R 21847811 intergenic not near genes chr2R_10_21845001 chr2R_21845001 RAL-158 306 chr2R 21904870 21904881 chr2R 21904944 21904974 4 83 2.0 2.0 2.0 1.3 104 chr2R 21904870 intron Fili + chr2R 21904922 intron Fili + chr2R 21904974 intron Fili + chr2R_4_21900001 chr2R_21900001 RAL-158 307 chr2R 21912746 21912775 chr2R 21912827 21912839 7 78 1.5 3.5 2.5 2.0 93 chr2R 21912746 intron Fili + chr2R 21912792 intron Fili + chr2R 21912839 intron Fili + chr2R_7_21910001 chr2R_21910001 RAL-158 308 chr2R 22208613 22208621 chr2R 22208960 22208982 5 352 2.5 2.5 2.5 1.4 369 chr2R 22208613 3` UTR CG3264 - chr2R 22208798 3` UTR CG3264 - chr2R 22208982 3` UTR CG3264 - chr2R_5_22205001 chr2R_22205001 RAL-158 309 chr2R 22349705 22349721 chr2R 22351472 22351504 jockey 5 1774 5.5 1.0 3.2 1.2 1799 chr2R 22349705 intron Liprin-gamma - chr2R 22350604 intron Liprin-gamma - chr2R 22351504 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-158 310 chr2R 22360384 22360395 chr2R 22360817 22360828 jockey 4 433 1.5 1.5 1.5 1.6 444 chr2R 22360384 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360828 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-158 311 chr2R 22525763 22525786 chr2R 22529322 22529336 jockey 4 3557 2.0 0.5 1.2 1.8 3573 chr2R 22525763 intron px - chr2R 22527550 intron px - chr2R 22529336 intron px - chr2R_4_22525001 chr2R_22525001 RAL-158 312 chr2R 22579605 22579627 chr2R 22579691 22579713 5 86 1.5 2.0 1.8 1.8 108 chr2R 22579605 intron dnr1 - chr2R 22579659 intron dnr1 - chr2R 22579713 intron dnr1 - chr2R_5_22575001 chr2R_22575001 RAL-158 313 chr2R 22774960 22775001 chr2R 22775379 22775420 jockey 10 412 0.0 1.0 0.5 6.7 460 chr2R 22774960 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-158 314 chr2R 22843032 22843046 chr2R 22844986 22844996 flea 4 1956 2.0 1.0 1.5 1.6 1964 chr2R 22843032 intergenic CG9826 + chr2R 22844014 intergenic not near genes chr2R 22844996 intergenic not near genes chr2R_4_22840001 chr2R_22840001 RAL-158 315 chr2R 23037276 23037302 chr2R 23037352 23037353 5 70 3.0 2.5 2.8 1.3 77 chr2R 23037276 intron,intron twi +,CG42741 - chr2R 23037314 intron,intron twi +,CG42741 - chr2R 23037353 intron,intron twi +,CG42741 - chr2R_5_23035001 chr2R_23035001 RAL-158 316 chr2R 23104186 23104213 chr2R 23105613 23105644 4 1424 3.0 2.5 2.8 1.1 1458 chr2R 23104186 exon Gr59d - chr2R 23104915 exon Gr59d - chr2R 23105644 intergenic Gr59d - chr2R_4_23100001 chr2R_23100001 RAL-158 317 chr2R 23117764 23117782 chr2R 23117846 23117856 5 79 1.5 0.5 1.0 2.5 92 chr2R 23117764 intergenic not near genes chr2R 23117810 intergenic not near genes chr2R 23117856 intergenic not near genes chr2R_5_23115001 chr2R_23115001 RAL-158 318 chr2R 23175040 23175048 chr2R 23175117 23175125 4 76 7.5 1.0 4.2 0.8 85 chr2R 23175040 intron CG34371 - chr2R 23175082 intron CG34371 - chr2R 23175125 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-158 319 chr2R 23422643 23422678 chr2R 23422723 23422758 8 75 4.0 5.0 4.5 1.5 115 chr2R 23422643 intron CG9815 - chr2R 23422700 intron CG9815 - chr2R 23422758 intron CG9815 - chr2R_8_23420001 chr2R_23420001 RAL-158 320 chr2R 23423742 23423772 chr2R 23423900 23423930 5 158 0.5 1.5 1.0 2.5 188 chr2R 23423742 intron CG9815 - chr2R 23423836 intron CG9815 - chr2R 23423930 intron CG9815 - chr2R_5_23420001 chr2R_23420001 RAL-158 321 chr2R 23594840 23594868 chr2R 23595057 23595085 5 217 1.0 1.5 1.2 2.3 245 chr2R 23594840 intron apt + chr2R 23594962 intron apt + chr2R 23595085 intron apt + chr2R_5_23590001 chr2R_23590001 RAL-158 322 chr2R 23636723 23636734 chr2R 23636801 23636810 5 78 4.0 4.0 4.0 1.0 87 chr2R 23636723 intron retn + chr2R 23636766 intron retn + chr2R 23636810 intron retn + chr2R_5_23635001 chr2R_23635001 RAL-158 323 chr2R 23636735 23636741 chr2R 23636796 23636819 6 72 4.0 4.0 4.0 1.2 84 chr2R 23636735 intron retn + chr2R 23636777 intron retn + chr2R 23636819 intron retn + chr2R_6_23635001 chr2R_23635001 RAL-158 324 chr2R 23653975 23653995 chr2R 23654051 23654072 7 77 5.0 2.5 3.8 1.5 97 chr2R 23653975 3` UTR retn + chr2R 23654024 3` UTR retn + chr2R 23654072 3` UTR retn + chr2R_7_23650001 chr2R_23650001 RAL-158 325 chr2R 23784474 23784499 chr2R 23784552 23784577 4 78 2.0 2.0 2.0 1.3 103 chr2R 23784474 intron CG9850 - chr2R 23784526 intron CG9850 - chr2R 23784577 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-158 326 chr2R 24031382 24031411 chr2R 24031466 24031486 6 82 0.5 1.0 0.8 3.3 104 chr2R 24031382 5` UTR CG30172 - chr2R 24031434 intergenic CG30172 -,Chi - chr2R 24031486 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-158 327 chr2R 24147071 24147096 chr2R 24154649 24154660 412 8 7570 2.5 3.5 3.0 2.0 7589 chr2R 24147071 intron Dat + chr2R 24150866 intron Dat + chr2R 24154660 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-158 328 chr2R 24321530 24321547 chr2R 24321612 24321631 5 83 9.0 2.0 5.5 0.8 101 chr2R 24321530 intergenic not near genes chr2R 24321580 intergenic not near genes chr2R 24321631 intergenic not near genes chr2R_5_24320001 chr2R_24320001 RAL-158 329 chr2R 24590121 24590145 chr2R 24590205 24590219 9 84 2.5 4.0 3.2 2.1 98 chr2R 24590121 intron pio + chr2R 24590170 intron pio + chr2R 24590219 intron pio + chr2R_9_24590001 chr2R_24590001 RAL-158 330 chr2R 24727884 24727907 chr2R 24735392 24735415 mdg1 5 7508 2.5 2.0 2.2 1.6 7531 chr2R 24727884 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735415 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-158 331 chr2R 24737164 24737175 chr2R 24737270 24737295 7 112 2.0 2.0 2.0 2.3 131 chr2R 24737164 intergenic not near genes chr2R 24737230 intergenic not near genes chr2R 24737295 intergenic not near genes chr2R_7_24735001 chr2R_24735001 RAL-158 332 chr2R 25018338 25018374 chr2R 25018439 25018475 4 94 2.5 1.5 2.0 1.3 137 chr2R 25018338 intron uzip + chr2R 25018406 intron uzip + chr2R 25018475 intron uzip + chr2R_4_25015001 chr2R_25015001 RAL-158 333 chr2R 25061339 25061369 chr2R 25061422 25061437 7 76 3.0 1.5 2.2 2.2 98 chr2R 25061339 intergenic not near genes chr2R 25061388 intergenic not near genes chr2R 25061437 intergenic not near genes chr2R_7_25060001 chr2R_25060001 RAL-158 334 chr2R 25101288 25101306 chr2R 25101380 25101396 4 93 1.0 0.0 0.5 2.7 108 chr2R 25101288 intron lov - chr2R 25101342 intron lov - chr2R 25101396 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-158 335 chr2R 25131010 25131043 chr2R 25131087 25131114 5 73 0.0 0.5 0.2 4.2 104 chr2R 25131010 intron lov - chr2R 25131062 intron lov - chr2R 25131114 intron lov - chr2R_5_25130001 chr2R_25130001 RAL-158 336 chr3L 68981 69000 chr3L 69068 69087 4 87 4.5 1.5 3.0 1.0 106 chr3L 68981 3` UTR Lsp1gamma + chr3L 69034 intergenic Lsp1gamma +,CR44510 + chr3L 69087 intergenic CR44510 +,Lsp1gamma + chr3L_4_65001 chr3L_65001 RAL-158 337 chr3L 93790 93814 chr3L 93871 93894 5 81 3.0 3.5 3.2 1.2 104 chr3L 93790 intergenic not near genes chr3L 93842 intergenic not near genes chr3L 93894 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-158 338 chr3L 138732 138765 chr3L 138814 138847 5 78 1.5 2.0 1.8 1.8 115 chr3L 138732 intron Pdk1 + chr3L 138790 intron Pdk1 + chr3L 138847 intron Pdk1 + chr3L_5_135001 chr3L_135001 RAL-158 339 chr3L 165681 165700 chr3L 165820 165836 4 136 3.0 1.0 2.0 1.3 155 chr3L 165681 intron p130CAS + chr3L 165758 intron p130CAS + chr3L 165836 intron p130CAS + chr3L_4_165001 chr3L_165001 RAL-158 340 chr3L 338821 338841 chr3L 338915 338935 6 90 3.0 3.0 3.0 1.5 114 chr3L 338821 intron,intron Ptpmeg +,mthl10 - chr3L 338878 intron,intron Ptpmeg +,mthl10 - chr3L 338935 intron,intron Ptpmeg +,mthl10 - chr3L_6_335001 chr3L_335001 RAL-158 341 chr3L 402703 402718 chr3L 409741 409769 297 6 7043 5.0 7.0 6.0 0.9 7066 chr3L 402703 intergenic not near genes chr3L 406236 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-158 342 chr3L 832614 832634 chr3L 832682 832705 11 74 3.5 1.5 2.5 3.1 91 chr3L 832614 intron,3` UTR CG13900 -,snoRNA:Psi28S-3308 - chr3L 832660 intron CG13900 - chr3L 832705 intron CG13900 - chr3L_11_830001 chr3L_830001 RAL-158 343 chr3L 875675 875692 chr3L 875747 875779 5 79 1.5 2.5 2.0 1.7 104 chr3L 875675 intron CG32479 + chr3L 875727 intron CG32479 + chr3L 875779 intron CG32479 + chr3L_5_875001 chr3L_875001 RAL-158 344 chr3L 908382 908412 chr3L 908652 908682 7 268 2.5 1.0 1.8 2.5 300 chr3L 908382 intergenic not near genes chr3L 908532 intergenic not near genes chr3L 908682 intergenic nerfin-1 + chr3L_7_905001 chr3L_905001 RAL-158 345 chr3L 1011020 1011026 chr3L 1011082 1011107 4 72 2.5 0.5 1.5 1.6 87 chr3L 1011020 intron trio - chr3L 1011064 intron trio - chr3L 1011107 intron trio - chr3L_4_1010001 chr3L_1010001 RAL-158 346 chr3L 1219598 1219625 chr3L 1227331 1227358 412 10 7731 1.5 4.0 2.8 2.6 7760 chr3L 1219598 intron mwh + chr3L 1223478 intron mwh + chr3L 1227358 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-158 347 chr3L 1361301 1361315 chr3L 1361376 1361389 6 72 2.5 4.5 3.5 1.3 88 chr3L 1361301 intron Ptp61F - chr3L 1361345 intron Ptp61F - chr3L 1361389 intron Ptp61F - chr3L_6_1360001 chr3L_1360001 RAL-158 348 chr3L 1415779 1415804 chr3L 1415861 1415886 6 80 3.0 2.0 2.5 1.7 107 chr3L 1415779 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415886 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-158 349 chr3L 1463417 1463448 chr3L 1463498 1463511 11 72 2.0 6.5 4.2 2.1 94 chr3L 1463417 intron Ptp61F - chr3L 1463464 intron Ptp61F - chr3L 1463511 intron Ptp61F - chr3L_11_1460001 chr3L_1460001 RAL-158 350 chr3L 1506005 1506033 chr3L 1513602 1513614 17.6 6 7591 2.5 3.0 2.8 1.6 7609 chr3L 1506005 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513614 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-158 351 chr3L 2321162 2321184 chr3L 2321234 2321261 9 74 3.0 1.5 2.2 2.8 99 chr3L 2321162 intergenic not near genes chr3L 2321212 intergenic not near genes chr3L 2321261 intergenic not near genes chr3L_9_2320001 chr3L_2320001 RAL-158 352 chr3L 2347849 2347871 chr3L 2347934 2347939 9 83 4.0 4.5 4.2 1.7 90 chr3L 2347849 intergenic not near genes chr3L 2347894 intergenic not near genes chr3L 2347939 intergenic not near genes chr3L_9_2345001 chr3L_2345001 RAL-158 353 chr3L 2447504 2447538 chr3L 2456660 2456694 roo 8 9152 2.0 6.0 4.0 1.6 9190 chr3L 2447504 intron CG45186 + chr3L 2452099 intron CG45186 + chr3L 2456694 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-158 354 chr3L 2561540 2561561 chr3L 2561617 2561638 4 76 0.5 0.5 0.5 2.7 98 chr3L 2561540 intron msn - chr3L 2561589 intron msn - chr3L 2561638 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-158 355 chr3L 2683960 2683974 chr3L 2684022 2684050 4 72 0.0 0.0 0.0 4.0 90 chr3L 2683960 intron Fife - chr3L 2684005 intron Fife - chr3L 2684050 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-158 356 chr3L 2853059 2853081 chr3L 2853130 2853160 4 77 1.5 1.0 1.2 1.8 101 chr3L 2853059 intron CG43444 - chr3L 2853110 intron CG43444 - chr3L 2853160 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-158 357 chr3L 2854488 2854504 chr3L 2854556 2854566 4 64 1.5 2.0 1.8 1.4 78 chr3L 2854488 intron CG43444 - chr3L 2854527 intron CG43444 - chr3L 2854566 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-158 358 chr3L 2904456 2904489 chr3L 2904540 2904555 4 72 0.5 1.0 0.8 2.2 99 chr3L 2904456 intron Shab + chr3L 2904506 intron Shab + chr3L 2904555 intron Shab + chr3L_4_2900001 chr3L_2900001 RAL-158 359 chr3L 2987722 2987732 chr3L 2987804 2987813 4 80 1.0 1.0 1.0 2.0 91 chr3L 2987722 intergenic not near genes chr3L 2987768 intergenic not near genes chr3L 2987813 intergenic not near genes chr3L_4_2985001 chr3L_2985001 RAL-158 360 chr3L 3178731 3178752 chr3L 3178814 3178835 5 82 3.5 0.0 1.8 1.8 104 chr3L 3178731 intergenic CG14964 -,Girdin + chr3L 3178783 intergenic Girdin +,CG14964 - chr3L 3178835 intergenic Girdin +,CG14964 - chr3L_5_3175001 chr3L_3175001 RAL-158 361 chr3L 3281442 3281472 chr3L 3281933 3281968 Doc 13 488 2.5 7.0 4.8 2.2 526 chr3L 3281442 intron CG12017 + chr3L 3281705 intron CG12017 + chr3L 3281968 intron CG12017 + chr3L_13_3280001 chr3L_3280001 RAL-158 362 chr3L 3284386 3284415 chr3L 3284461 3284475 6 71 1.0 2.0 1.5 2.4 89 chr3L 3284386 intron CG12017 + chr3L 3284430 intron CG12017 + chr3L 3284475 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-158 363 chr3L 3410567 3410576 chr3L 3410649 3410661 4 84 0.0 4.5 2.2 1.2 94 chr3L 3410567 intron sty - chr3L 3410614 intron sty - chr3L 3410661 intron sty - chr3L_4_3410001 chr3L_3410001 RAL-158 364 chr3L 3474409 3474428 chr3L 3474489 3474507 5 74 2.5 2.0 2.2 1.6 98 chr3L 3474409 intron CG42324 + chr3L 3474458 intron CG42324 + chr3L 3474507 intron CG42324 + chr3L_5_3470001 chr3L_3470001 RAL-158 365 chr3L 3475076 3475102 chr3L 3475519 3475546 jockey 7 444 2.5 3.5 3.0 1.8 470 chr3L 3475076 intron CG42324 + chr3L 3475311 intron CG42324 + chr3L 3475546 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-158 366 chr3L 3601297 3601328 chr3L 3606607 3606639 copia 7 5309 5.0 1.0 3.0 1.8 5342 chr3L 3601297 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-158 367 chr3L 3921413 3921425 chr3L 3921656 3921682 5 258 0.5 2.5 1.5 2.0 269 chr3L 3921413 intron Eip63F-1 - chr3L 3921548 intron Eip63F-1 - chr3L 3921682 intron Eip63F-1 - chr3L_5_3920001 chr3L_3920001 RAL-158 368 chr3L 4477577 4477592 chr3L 4478155 4478183 11 584 16.0 15.0 15.5 0.7 606 chr3L 4477577 intergenic not near genes chr3L 4477880 intergenic not near genes chr3L 4478183 intergenic not near genes chr3L_11_4475001 chr3L_4475001 RAL-158 369 chr3L 5212243 5212269 chr3L 5212326 5212352 8 82 2.5 1.5 2.0 2.7 109 chr3L 5212243 intron shep - chr3L 5212298 intron shep - chr3L 5212352 intron shep - chr3L_8_5210001 chr3L_5210001 RAL-158 370 chr3L 5864798 5864833 chr3L 5864875 5864892 7 74 2.0 3.5 2.8 1.8 94 chr3L 5864798 intergenic not near genes chr3L 5864845 intergenic not near genes chr3L 5864892 intergenic not near genes chr3L_7_5860001 chr3L_5860001 RAL-158 371 chr3L 6001684 6001707 chr3L 6004380 6004393 jockey 5 2692 3.0 1.5 2.2 1.6 2709 chr3L 6001684 intron PVRAP + chr3L 6003038 intron PVRAP + chr3L 6004393 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-158 372 chr3L 6323766 6323790 chr3L 6323880 6323889 9 106 3.0 0.5 1.8 3.2 123 chr3L 6323766 intergenic not near genes chr3L 6323828 intergenic not near genes chr3L 6323889 intergenic not near genes chr3L_9_6320001 chr3L_6320001 RAL-158 373 chr3L 6335008 6335042 chr3L 6335479 6335513 297 4 468 1.5 2.5 2.0 1.3 505 chr3L 6335008 intron CG13300 - chr3L 6335260 intron CG13300 - chr3L 6335513 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-158 374 chr3L 6582771 6582795 chr3L 6582870 6582885 4 97 0.5 2.0 1.2 1.8 114 chr3L 6582771 intron,intron CG18769 +,jv - chr3L 6582828 intron,intron CG18769 +,jv - chr3L 6582885 intron,intron CG18769 +,jv - chr3L_4_6580001 chr3L_6580001 RAL-158 375 chr3L 6642869 6643160 chr3L 6642949 6643245 7 85 0.5 0.0 0.2 5.8 376 chr3L 6642869 intergenic CR45239 + chr3L 6643057 intergenic CR45239 + chr3L 6643245 intergenic CR45239 + chr3L_7_6640001 chr3L_6640001 RAL-158 376 chr3L 7033178 7033204 chr3L 7033256 7033283 5 73 3.5 5.5 4.5 0.9 105 chr3L 7033178 intron Mp + chr3L 7033230 intron Mp + chr3L 7033283 intron Mp + chr3L_5_7030001 chr3L_7030001 RAL-158 377 chr3L 7244940 7244960 chr3L 7245030 7245050 7 89 4.5 1.0 2.8 1.8 110 chr3L 7244940 exon mei-P22 + chr3L 7244995 exon mei-P22 + chr3L 7245050 exon mei-P22 + chr3L_7_7240001 chr3L_7240001 RAL-158 378 chr3L 7377320 7377334 chr3L 7380425 7380430 297 5 3103 0.0 2.5 1.2 2.3 3110 chr3L 7377320 intron SMSr - chr3L 7378875 intron SMSr - chr3L 7380430 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-158 379 chr3L 7561749 7561759 chr3L 7562361 7562380 4 619 8.5 5.0 6.8 0.5 631 chr3L 7561749 intergenic not near genes chr3L 7562064 intergenic not near genes chr3L 7562380 intergenic frac + chr3L_4_7560001 chr3L_7560001 RAL-158 380 chr3L 7560971 7560998 chr3L 7563245 7563276 5 2283 18.5 14.0 16.2 0.3 2305 chr3L 7560971 intergenic not near genes chr3L 7562124 intergenic frac + chr3L 7563276 intron frac + chr3L_5_7560001 chr3L_7560001 RAL-158 381 chr3L 7572055 7572089 chr3L 7572147 7572173 9 88 3.0 4.0 3.5 2.0 118 chr3L 7572055 intergenic not near genes chr3L 7572114 intergenic not near genes chr3L 7572173 intergenic not near genes chr3L_9_7570001 chr3L_7570001 RAL-158 382 chr3L 7647492 7647522 chr3L 7647804 7647817 6 303 4.5 0.5 2.5 1.7 325 chr3L 7647492 intergenic not near genes chr3L 7647654 intergenic not near genes chr3L 7647817 intergenic not near genes chr3L_6_7645001 chr3L_7645001 RAL-158 383 chr3L 7708849 7708875 chr3L 7708950 7708976 7 97 0.5 0.5 0.5 4.7 127 chr3L 7708849 intron,intron CG32373 +,Ank2 - chr3L 7708912 intron,intron CG32373 +,Ank2 - chr3L 7708976 intron,intron CG32373 +,Ank2 - chr3L_7_7705001 chr3L_7705001 RAL-158 384 chr3L 7883748 7883778 chr3L 7883905 7883925 5 152 1.0 0.5 0.8 2.8 177 chr3L 7883748 intron CG32365 + chr3L 7883836 intron CG32365 + chr3L 7883925 intron CG32365 + chr3L_5_7880001 chr3L_7880001 RAL-158 385 chr3L 7886512 7886545 chr3L 7889030 7889063 Stalker4 13 2513 1.5 2.0 1.8 4.6 2551 chr3L 7886512 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_13_7885001 chr3L_7885001 RAL-158 386 chr3L 8059815 8059849 chr3L 8059896 8059932 4 83 4.0 1.5 2.8 1.1 117 chr3L 8059815 intergenic not near genes chr3L 8059874 intergenic not near genes chr3L 8059932 intergenic not near genes chr3L_4_8055001 chr3L_8055001 RAL-158 387 chr3L 8208126 8208153 chr3L 8208258 8208285 6 129 2.5 0.5 1.5 2.4 159 chr3L 8208126 intergenic not near genes chr3L 8208206 intergenic not near genes chr3L 8208285 intergenic not near genes chr3L_6_8205001 chr3L_8205001 RAL-158 388 chr3L 8395836 8395864 chr3L 8395932 8395943 4 89 2.5 2.0 2.2 1.2 107 chr3L 8395836 intergenic CG7120 + chr3L 8395890 intergenic CG7120 + chr3L 8395943 intergenic CG7120 + chr3L_4_8395001 chr3L_8395001 RAL-158 389 chr3L 8579834 8579860 chr3L 8579916 8579923 11 71 2.0 1.5 1.8 3.9 89 chr3L 8579834 intron CG43078 + chr3L 8579878 intron CG43078 + chr3L 8579923 intron CG43078 + chr3L_11_8575001 chr3L_8575001 RAL-158 390 chr3L 8791274 8791295 chr3L 8796694 8796709 I-element 5 5414 5.0 0.0 2.5 1.4 5435 chr3L 8791274 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796709 intron Fhos + chr3L_5_8790001 chr3L_8790001 RAL-158 391 chr3L 8839727 8839747 chr3L 8839807 8839826 5 79 0.0 0.5 0.2 4.2 99 chr3L 8839727 intron dally + chr3L 8839776 intron dally + chr3L 8839826 intron dally + chr3L_5_8835001 chr3L_8835001 RAL-158 392 chr3L 9013691 9013692 chr3L 18417066 18417066 5 9403375 28.0 15.5 21.8 0.2 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-158 393 chr3L 9130556 9130578 chr3L 9134317 9134339 412 5 3759 3.0 2.0 2.5 1.4 3783 chr3L 9130556 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134339 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-158 394 chr3L 9219262 9219273 chr3L 9219911 9219920 jockey 5 655 3.5 5.0 4.2 1.0 658 chr3L 9219262 intergenic not near genes chr3L 9219591 intergenic not near genes chr3L 9219920 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-158 395 chr3L 9220222 9220235 chr3L 9220305 9220316 5 83 2.5 2.5 2.5 1.4 94 chr3L 9220222 intergenic not near genes chr3L 9220269 intergenic not near genes chr3L 9220316 intergenic not near genes chr3L_5_9220001 chr3L_9220001 RAL-158 396 chr3L 9533762 9533776 chr3L 9541314 9541318 412 5 7551 3.5 6.5 5.0 0.8 7556 chr3L 9533762 intergenic not near genes chr3L 9537540 intergenic not near genes chr3L 9541318 intergenic not near genes chr3L_5_9535001 chr3L_9535001 RAL-158 397 chr3L 9951201 9951228 chr3L 9951288 9951313 8 86 0.5 1.5 1.0 4.0 112 chr3L 9951201 intron CG34356 + chr3L 9951257 intron CG34356 + chr3L 9951313 intron CG34356 + chr3L_8_9950001 chr3L_9950001 RAL-158 398 chr3L 10003163 10003181 chr3L 10003247 10003278 8 93 0.0 1.0 0.5 5.3 115 chr3L 10003163 intron dpr6 + chr3L 10003220 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_8_10000001 chr3L_10000001 RAL-158 399 chr3L 10011587 10011613 chr3L 10011669 10011685 7 81 2.5 2.0 2.2 2.2 98 chr3L 10011587 intron dpr6 + chr3L 10011636 intron dpr6 + chr3L 10011685 intron dpr6 + chr3L_7_10010001 chr3L_10010001 RAL-158 400 chr3L 10308754 10308775 chr3L 10308831 10308837 6 73 1.5 4.5 3.0 1.5 83 chr3L 10308754 intergenic not near genes chr3L 10308796 intergenic not near genes chr3L 10308837 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-158 401 chr3L 10414954 10414975 chr3L 10417326 10417347 Doc 4 2372 0.0 2.0 1.0 2.0 2393 chr3L 10414954 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-158 402 chr3L 10417570 10417606 chr3L 10417646 10417672 6 72 2.0 2.5 2.2 1.9 102 chr3L 10417570 intergenic not near genes chr3L 10417621 intergenic not near genes chr3L 10417672 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-158 403 chr3L 10509484 10509505 chr3L 10509613 10509624 4 126 1.0 0.5 0.8 2.2 140 chr3L 10509484 intron A2bp1 + chr3L 10509554 intron A2bp1 + chr3L 10509624 intron A2bp1 + chr3L_4_10505001 chr3L_10505001 RAL-158 404 chr3L 10658103 10658212 chr3L 10658163 10658339 5 111 0.0 0.0 0.0 5.0 236 chr3L 10658103 intron CG32066 - chr3L 10658221 intron CG32066 - chr3L 10658339 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-158 405 chr3L 10729806 10729835 chr3L 10729884 10729913 9 78 2.0 0.0 1.0 4.5 107 chr3L 10729806 intergenic not near genes chr3L 10729860 intergenic not near genes chr3L 10729913 intergenic not near genes chr3L_9_10725001 chr3L_10725001 RAL-158 406 chr3L 10762833 10762859 chr3L 10762913 10762934 8 81 3.5 0.5 2.0 2.7 101 chr3L 10762833 intergenic not near genes chr3L 10762884 intergenic not near genes chr3L 10762934 intergenic not near genes chr3L_8_10760001 chr3L_10760001 RAL-158 407 chr3L 11087070 11087088 chr3L 11088859 11088877 S-element 4 1789 0.0 2.0 1.0 2.0 1807 chr3L 11087070 intron JIL-1 - chr3L 11087974 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-158 408 chr3L 11105298 11105329 chr3L 11107009 11107037 X-element 6 1710 0.5 4.0 2.2 1.9 1739 chr3L 11105298 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107037 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-158 409 chr3L 11349023 11349041 chr3L 11349117 11349135 4 94 2.0 3.0 2.5 1.1 112 chr3L 11349023 intergenic CR45251 - chr3L 11349079 intergenic CR45251 - chr3L 11349135 intergenic CR45251 - chr3L_4_11345001 chr3L_11345001 RAL-158 410 chr3L 11564809 11564812 chr3L 11572422 11572437 412 5 7620 3.0 8.0 5.5 0.8 7628 chr3L 11564809 exon CG33267 + chr3L 11568623 intron CG33267 + chr3L 11572437 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-158 411 chr3L 11575647 11575681 chr3L 11575752 11575786 6 104 1.5 0.5 1.0 3.0 139 chr3L 11575647 intron CG33489 - chr3L 11575716 intron CG33489 - chr3L 11575786 intron CG33489 - chr3L_6_11575001 chr3L_11575001 RAL-158 412 chr3L 11872660 11872689 chr3L 11873002 11873018 4 338 1.5 3.5 2.5 1.1 358 chr3L 11872660 intron CG44837 - chr3L 11872839 intron CG44837 - chr3L 11873018 intron CG44837 - chr3L_4_11870001 chr3L_11870001 RAL-158 413 chr3L 12046298 12046317 chr3L 12046734 12046761 4 442 0.0 0.0 0.0 4.0 463 chr3L 12046298 intron rols - chr3L 12046530 intron rols - chr3L 12046761 intron rols - chr3L_4_12045001 chr3L_12045001 RAL-158 414 chr3L 12158783 12158803 chr3L 12160258 12160273 8 1471 31.0 27.0 29.0 0.3 1490 chr3L 12158783 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160273 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-158 415 chr3L 12312484 12312506 chr3L 12312562 12312584 6 76 2.0 4.0 3.0 1.5 100 chr3L 12312484 intergenic not near genes chr3L 12312534 intergenic not near genes chr3L 12312584 intergenic not near genes chr3L_6_12310001 chr3L_12310001 RAL-158 416 chr3L 12894804 12894815 chr3L 12894881 12894893 5 78 5.5 9.5 7.5 0.6 89 chr3L 12894804 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894893 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-158 417 chr3L 12919280 12919298 chr3L 12924753 12924770 Rt1c 4 5469 1.5 2.5 2.0 1.3 5490 chr3L 12919280 intergenic not near genes chr3L 12922025 intergenic not near genes chr3L 12924770 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-158 418 chr3L 13074038 13074056 chr3L 13074171 13074189 5 133 2.0 1.5 1.8 1.8 151 chr3L 13074038 intergenic not near genes chr3L 13074114 intergenic not near genes chr3L 13074189 intergenic not near genes chr3L_5_13070001 chr3L_13070001 RAL-158 419 chr3L 13107859 13107889 chr3L 13107948 13107977 5 86 2.5 1.0 1.8 1.8 118 chr3L 13107859 intergenic not near genes chr3L 13107918 intergenic not near genes chr3L 13107977 intergenic not near genes chr3L_5_13105001 chr3L_13105001 RAL-158 420 chr3L 13525160 13525190 chr3L 13532956 13532986 roo 8 7792 1.5 2.5 2.0 2.7 7826 chr3L 13525160 intergenic not near genes chr3L 13529073 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-158 421 chr3L 13605345 13605359 chr3L 13605420 13605438 4 78 3.5 1.5 2.5 1.1 93 chr3L 13605345 intron bru-3 - chr3L 13605392 intron bru-3 - chr3L 13605438 intron bru-3 - chr3L_4_13605001 chr3L_13605001 RAL-158 422 chr3L 13605362 13605368 chr3L 13605411 13605412 4 62 3.0 1.5 2.2 1.2 50 chr3L 13605362 intron bru-3 - chr3L 13605387 intron bru-3 - chr3L 13605412 intron bru-3 - chr3L_4_13605001 chr3L_13605001 RAL-158 423 chr3L 13686056 13686087 chr3L 13686133 13686164 7 69 2.0 2.5 2.2 2.2 108 chr3L 13686056 intron bru-3 - chr3L 13686110 intron bru-3 - chr3L 13686164 intron bru-3 - chr3L_7_13685001 chr3L_13685001 RAL-158 424 chr3L 13722445 13722472 chr3L 13722523 13722550 4 76 1.0 1.5 1.2 1.8 105 chr3L 13722445 intron bru-3 - chr3L 13722498 intron bru-3 - chr3L 13722550 intron bru-3 - chr3L_4_13720001 chr3L_13720001 RAL-158 425 chr3L 13965048 13965079 chr3L 13965133 13965155 8 79 0.5 1.5 1.0 4.0 107 chr3L 13965048 intergenic Nxf3 +,ssp2 +,Meics - chr3L 13965102 intergenic Nxf3 +,ssp2 +,Meics - chr3L 13965155 intergenic Nxf3 +,ssp2 +,Meics - chr3L_8_13965001 chr3L_13965001 RAL-158 426 chr3L 13988482 13988500 chr3L 13988593 13988614 6 116 2.0 1.0 1.5 2.4 132 chr3L 13988482 intron,3` UTR CG17364 -,CG9040 + chr3L 13988548 intron,3` UTR CG17364 -,CG9040 + chr3L 13988614 intron,3` UTR CG17364 -,CG9040 + chr3L_6_13985001 chr3L_13985001 RAL-158 427 chr3L 14102588 14102615 chr3L 14102849 14102860 9 250 4.0 5.5 4.8 1.6 272 chr3L 14102588 intergenic not near genes chr3L 14102724 intergenic not near genes chr3L 14102860 intergenic not near genes chr3L_9_14100001 chr3L_14100001 RAL-158 428 chr3L 14295980 14296000 chr3L 14296466 14296486 roo 6 485 4.5 1.0 2.8 1.6 506 chr3L 14295980 intron fz + chr3L 14296233 intron fz + chr3L 14296486 intron fz + chr3L_6_14295001 chr3L_14295001 RAL-158 429 chr3L 14348916 14348933 chr3L 14349002 14349013 4 82 0.0 6.5 3.2 1.0 97 chr3L 14348916 intron fz + chr3L 14348964 intron fz + chr3L 14349013 intron fz + chr3L_4_14345001 chr3L_14345001 RAL-158 430 chr3L 14356519 14356549 chr3L 14356598 14356628 8 76 3.0 2.5 2.8 2.1 109 chr3L 14356519 intron fz + chr3L 14356574 intron fz + chr3L 14356628 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-158 431 chr3L 14396657 14396680 chr3L 14396779 14396800 4 122 1.5 1.0 1.2 1.8 143 chr3L 14396657 intergenic not near genes chr3L 14396728 intergenic not near genes chr3L 14396800 intergenic not near genes chr3L_4_14395001 chr3L_14395001 RAL-158 432 chr3L 14721205 14721210 chr3L 14723026 14723053 Rt1c 4 1836 5.0 3.0 4.0 0.8 1848 chr3L 14721205 intron ome + chr3L 14722129 intron ome + chr3L 14723053 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-158 433 chr3L 14840378 14840392 chr3L 14840479 14840497 4 103 1.0 4.0 2.5 1.1 119 chr3L 14840378 intron CG17839 + chr3L 14840438 intron CG17839 + chr3L 14840497 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-158 434 chr3L 14961884 14961909 chr3L 14962234 14962240 4 340 2.0 1.5 1.8 1.4 356 chr3L 14961884 intergenic not near genes chr3L 14962062 intergenic not near genes chr3L 14962240 intergenic not near genes chr3L_4_14960001 chr3L_14960001 RAL-158 435 chr3L 15832268 15832284 chr3L 15832344 15832352 5 77 1.5 5.5 3.5 1.1 84 chr3L 15832268 intergenic CG12713 +,dbo + chr3L 15832310 intergenic CG12713 +,dbo + chr3L 15832352 intergenic CG12713 +,dbo + chr3L_5_15830001 chr3L_15830001 RAL-158 436 chr3L 15880593 15880623 chr3L 15880672 15880678 6 74 2.0 4.5 3.2 1.4 85 chr3L 15880593 intron pHCl - chr3L 15880636 intron pHCl - chr3L 15880678 intron pHCl - chr3L_6_15880001 chr3L_15880001 RAL-158 437 chr3L 15899225 15899262 chr3L 15899791 15899803 jockey 6 560 1.5 4.0 2.8 1.6 578 chr3L 15899225 intergenic pHCl - chr3L 15899514 intergenic pHCl - chr3L 15899803 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-158 438 chr3L 16322828 16322858 chr3L 16322917 16322948 8 88 0.0 2.5 1.2 3.6 120 chr3L 16322828 intergenic not near genes chr3L 16322888 intergenic not near genes chr3L 16322948 intergenic not near genes chr3L_8_16320001 chr3L_16320001 RAL-158 439 chr3L 16360886 16360914 chr3L 16360963 16360982 12 73 3.0 5.0 4.0 2.4 96 chr3L 16360886 intron CG45057 - chr3L 16360934 intron CG45057 - chr3L 16360982 intron CG45057 - chr3L_12_16360001 chr3L_16360001 RAL-158 440 chr3L 16817890 16817905 chr3L 16818030 16818045 5 138 1.5 2.5 2.0 1.7 155 chr3L 16817890 intron,intron nudC +,CG13024 - chr3L 16817968 intron,intron nudC +,CG13024 - chr3L 16818045 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-158 441 chr3L 16845026 16845037 chr3L 16845139 16845150 4 113 2.5 1.0 1.8 1.4 124 chr3L 16845026 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845150 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-158 442 chr3L 16873343 16873361 chr3L 16873444 16873466 4 102 2.5 1.0 1.8 1.4 123 chr3L 16873343 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873466 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-158 443 chr3L 16933510 16933537 chr3L 16933588 16933605 9 76 2.5 2.0 2.2 2.8 95 chr3L 16933510 intron CG11905 - chr3L 16933558 intron CG11905 - chr3L 16933605 intron CG11905 - chr3L_9_16930001 chr3L_16930001 RAL-158 444 chr3L 16945726 16945761 chr3L 16954879 16954892 roo 8 9148 3.0 2.0 2.5 2.3 9166 chr3L 16945726 exon Obp73a + chr3L 16950309 intergenic not near genes chr3L 16954892 5` UTR Nc73EF + chr3L_8_16950001 chr3L_16950001 RAL-158 445 chr3L 17113885 17113895 chr3L 17113958 17113980 4 82 5.0 3.5 4.2 0.8 95 chr3L 17113885 intron Rbp6 - chr3L 17113932 intron Rbp6 - chr3L 17113980 intron Rbp6 - chr3L_4_17110001 chr3L_17110001 RAL-158 446 chr3L 17117111 17117132 chr3L 17117196 17117217 5 84 0.5 2.5 1.5 2.0 106 chr3L 17117111 intron Rbp6 - chr3L 17117164 intron Rbp6 - chr3L 17117217 intron Rbp6 - chr3L_5_17115001 chr3L_17115001 RAL-158 447 chr3L 17202474 17202488 chr3L 17202635 17202650 4 162 6.0 2.5 4.2 0.8 176 chr3L 17202474 intron Rbp6 - chr3L 17202562 intron Rbp6 - chr3L 17202650 intron Rbp6 - chr3L_4_17200001 chr3L_17200001 RAL-158 448 chr3L 17516990 17517012 chr3L 17524548 17524550 412 5 7554 0.5 4.0 2.2 1.6 7560 chr3L 17516990 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524550 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-158 449 chr3L 17898937 17898960 chr3L 17899013 17899027 6 72 1.0 2.0 1.5 2.4 90 chr3L 17898937 3` UTR Prestin - chr3L 17898982 3` UTR Prestin - chr3L 17899027 3` UTR Prestin - chr3L_6_17895001 chr3L_17895001 RAL-158 450 chr3L 18000695 18000701 chr3L 18000772 18000778 4 77 1.0 2.0 1.5 1.6 83 chr3L 18000695 intron Eip75B - chr3L 18000736 intron Eip75B - chr3L 18000778 intron Eip75B - chr3L_4_18000001 chr3L_18000001 RAL-158 451 chr3L 18248953 18248973 chr3L 18249050 18249059 4 95 1.5 2.5 2.0 1.3 106 chr3L 18248953 intergenic not near genes chr3L 18249006 intergenic not near genes chr3L 18249059 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-158 452 chr3L 9013689 9013691 chr3L 18417066 18417066 4 9403376 28.0 15.5 21.8 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-158 453 chr3L 18538635 18538648 chr3L 18539128 18539139 5 491 3.0 2.0 2.5 1.4 504 chr3L 18538635 intergenic not near genes chr3L 18538887 intergenic not near genes chr3L 18539139 intergenic not near genes chr3L_5_18535001 chr3L_18535001 RAL-158 454 chr3L 18634632 18634658 chr3L 18634716 18634742 4 82 1.5 2.5 2.0 1.3 110 chr3L 18634632 intron MYPT-75D + chr3L 18634687 intron MYPT-75D + chr3L 18634742 intron MYPT-75D + chr3L_4_18630001 chr3L_18630001 RAL-158 455 chr3L 18772423 18772439 chr3L 18781103 18781120 roo 4 8678 2.0 2.0 2.0 1.3 8697 chr3L 18772423 intron ftz-f1 - chr3L 18776772 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-158 456 chr3L 18928316 18928341 chr3L 18928402 18928428 4 87 2.0 1.5 1.8 1.4 112 chr3L 18928316 intron CG32204 - chr3L 18928372 intron CG32204 - chr3L 18928428 intron CG32204 - chr3L_4_18925001 chr3L_18925001 RAL-158 457 chr3L 18932281 18932300 chr3L 18932386 18932406 8 102 2.0 4.0 3.0 2.0 125 chr3L 18932281 intron CG32204 - chr3L 18932344 intron CG32204 - chr3L 18932406 intron CG32204 - chr3L_8_18930001 chr3L_18930001 RAL-158 458 chr3L 19008854 19008872 chr3L 19009192 19009210 jockey 7 338 3.5 2.0 2.8 1.8 356 chr3L 19008854 intron nkd - chr3L 19009032 intron nkd - chr3L 19009210 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-158 459 chr3L 19082037 19082067 chr3L 19082138 19082169 5 102 2.5 2.0 2.2 1.6 132 chr3L 19082037 intron Mkp3 - chr3L 19082103 intron Mkp3 - chr3L 19082169 intron Mkp3 - chr3L_5_19080001 chr3L_19080001 RAL-158 460 chr3L 19117041 19117075 chr3L 19124488 19124512 mdg1 9 7446 2.5 1.0 1.8 3.2 7471 chr3L 19117041 intron CG14082 - chr3L 19120776 intron CG14082 - chr3L 19124512 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-158 461 chr3L 19220633 19220634 chr3L 22908066 22908067 4 3687433 22.0 10.0 16.0 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-158 462 chr3L 19269819 19269837 chr3L 19270021 19270041 4 203 4.5 3.5 4.0 0.8 222 chr3L 19269819 intron,exon CG14085 +,CG14088 - chr3L 19269930 intron,exon CG14085 +,CG14088 - chr3L 19270041 intron,exon CG14085 +,CG14088 - chr3L_4_19265001 chr3L_19265001 RAL-158 463 chr3L 19417798 19417831 chr3L 19417878 19417883 6 73 1.0 0.5 0.8 3.3 85 chr3L 19417798 intergenic not near genes chr3L 19417840 intergenic not near genes chr3L 19417883 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-158 464 chr3L 19426771 19426777 chr3L 19426824 19426848 4 64 4.5 3.5 4.0 0.8 77 chr3L 19426771 intergenic not near genes chr3L 19426810 intergenic not near genes chr3L 19426848 intergenic not near genes chr3L_4_19425001 chr3L_19425001 RAL-158 465 chr3L 19527930 19527956 chr3L 19528004 19528031 7 73 3.5 1.0 2.2 2.2 101 chr3L 19527930 intergenic not near genes chr3L 19527980 intergenic not near genes chr3L 19528031 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-158 466 chr3L 19676083 19676115 chr3L 19676162 19676165 6 71 4.5 0.0 2.2 1.9 82 chr3L 19676083 intergenic not near genes chr3L 19676124 intergenic not near genes chr3L 19676165 intergenic not near genes chr3L_6_19675001 chr3L_19675001 RAL-158 467 chr3L 20251148 20251154 chr3L 20251235 20251241 4 87 5.0 1.5 3.2 1.0 93 chr3L 20251148 intron rdgC + chr3L 20251194 intron rdgC + chr3L 20251241 intron rdgC + chr3L_4_20250001 chr3L_20250001 RAL-158 468 chr3L 20257341 20257354 chr3L 20258458 20258474 pogo 7 1119 0.5 3.0 1.8 2.5 1133 chr3L 20257341 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258474 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-158 469 chr3L 20283676 20283708 chr3L 20283760 20283792 6 81 0.5 0.5 0.5 4.0 116 chr3L 20283676 intron gogo - chr3L 20283734 intron gogo - chr3L 20283792 intron gogo - chr3L_6_20280001 chr3L_20280001 RAL-158 470 chr3L 20386944 20386969 chr3L 20387046 20387071 4 102 2.0 1.5 1.8 1.4 127 chr3L 20386944 intron fbl + chr3L 20387008 intron fbl + chr3L 20387071 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-158 471 chr3L 20532579 20532595 chr3L 20532957 20532961 4 375 1.5 1.5 1.5 1.6 382 chr3L 20532579 intron Rcd2 - chr3L 20532770 intron Rcd2 - chr3L 20532961 intron Rcd2 - chr3L_4_20530001 chr3L_20530001 RAL-158 472 chr3L 20590086 20590095 chr3L 20590601 20590627 412 7 528 2.5 1.0 1.8 2.5 541 chr3L 20590086 intergenic not near genes chr3L 20590356 intergenic not near genes chr3L 20590627 intergenic not near genes chr3L_7_20590001 chr3L_20590001 RAL-158 473 chr3L 20913754 20913778 chr3L 20913836 20913857 5 77 3.0 3.0 3.0 1.2 103 chr3L 20913754 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913857 intergenic CR43930 - chr3L_5_20910001 chr3L_20910001 RAL-158 474 chr3L 21014914 21014948 chr3L 21023395 21023402 Tirant 7 8471 2.5 3.5 3.0 1.8 8488 chr3L 21014914 intron skd - chr3L 21019158 intron skd - chr3L 21023402 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-158 475 chr3L 21151870 21151894 chr3L 21156952 21156978 flea 5 5083 2.0 0.5 1.2 2.3 5108 chr3L 21151870 intron Ac78C - chr3L 21154424 intron Ac78C - chr3L 21156978 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-158 476 chr3L 21306152 21306169 chr3L 21315304 21315312 roo 4 9152 0.5 1.0 0.8 2.2 9160 chr3L 21306152 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310732 intron Pc - chr3L 21315312 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-158 477 chr3L 21408466 21408488 chr3L 21408543 21408566 6 76 1.0 4.5 2.8 1.6 100 chr3L 21408466 intron rgn + chr3L 21408516 intron rgn + chr3L 21408566 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-158 478 chr3L 21498858 21498865 chr3L 21500469 21500478 1360 5 1626 2.5 1.0 1.8 1.8 1620 chr3L 21498858 intron Glg1 - chr3L 21499668 intron Glg1 - chr3L 21500478 intron Glg1 - chr3L_5_21495001 chr3L_21495001 RAL-158 479 chr3L 21872428 21872450 chr3L 21872505 21872528 6 78 0.5 2.0 1.2 2.7 100 chr3L 21872428 intron mub + chr3L 21872478 intron mub + chr3L 21872528 intron mub + chr3L_6_21870001 chr3L_21870001 RAL-158 480 chr3L 21886387 21886420 chr3L 21886466 21886502 6 80 0.0 1.0 0.5 4.0 115 chr3L 21886387 intron,intron mub +,CR43878 - chr3L 21886444 intron,intron mub +,CR43878 - chr3L 21886502 intron,intron mub +,CR43878 - chr3L_6_21885001 chr3L_21885001 RAL-158 481 chr3L 21950337 21950341 chr3L 21950414 21950416 5 76 7.0 5.0 6.0 0.7 79 chr3L 21950337 exon CG7448 + chr3L 21950376 exon CG7448 + chr3L 21950416 intron CG7448 + chr3L_5_21950001 chr3L_21950001 RAL-158 482 chr3L 22008874 22008879 chr3L 22008926 22008947 6 63 2.0 3.5 2.8 1.6 73 chr3L 22008874 intergenic not near genes chr3L 22008910 intergenic not near genes chr3L 22008947 intergenic not near genes chr3L_6_22005001 chr3L_22005001 RAL-158 483 chr3L 22099680 22099709 chr3L 22105865 22105884 3S18 4 6181 1.0 0.5 0.8 2.2 6204 chr3L 22099680 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105884 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-158 484 chr3L 22169458 22169487 chr3L 22169550 22169580 4 88 1.5 0.5 1.0 2.0 122 chr3L 22169458 intron olf413 + chr3L 22169519 intron olf413 + chr3L 22169580 intron olf413 + chr3L_4_22165001 chr3L_22165001 RAL-158 485 chr3L 22271131 22271160 chr3L 22271258 22271287 7 126 3.0 2.0 2.5 2.0 156 chr3L 22271131 intron Csp + chr3L 22271209 intron Csp + chr3L 22271287 intron Csp + chr3L_7_22270001 chr3L_22270001 RAL-158 486 chr3L 22284374 22284396 chr3L 22284485 22284511 6 112 3.0 2.0 2.5 1.7 137 chr3L 22284374 3` UTR Hem - chr3L 22284442 3` UTR Hem - chr3L 22284511 3` UTR Hem - chr3L_6_22280001 chr3L_22280001 RAL-158 487 chr3L 22447209 22447232 chr3L 22447295 22447323 5 88 2.5 3.0 2.8 1.3 114 chr3L 22447209 intergenic not near genes chr3L 22447266 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-158 488 chr3L 22450271 22450299 chr3L 22450371 22450400 6 98 4.5 3.0 3.8 1.2 129 chr3L 22450271 intergenic not near genes chr3L 22450336 intergenic not near genes chr3L 22450400 intergenic not near genes chr3L_6_22450001 chr3L_22450001 RAL-158 489 chr3L 22577636 22577651 chr3L 22582408 22582424 Doc 7 4779 3.0 3.5 3.2 1.7 4788 chr3L 22577636 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582424 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-158 490 chr3L 22675620 22675636 chr3L 22675718 22675721 6 93 2.0 1.0 1.5 2.4 101 chr3L 22675620 intron CG14457 + chr3L 22675670 intron CG14457 + chr3L 22675721 intron CG14457 + chr3L_6_22675001 chr3L_22675001 RAL-158 491 chr3L 22853465 22853722 chr3L 22853552 22853808 9 83 0.5 3.0 1.8 3.2 343 chr3L 22853465 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853808 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-158 492 chr3L 19220633 19220637 chr3L 22908066 22908066 12 3687430 21.5 10.0 15.8 0.7 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_12_21060001 chr3L_21060001 RAL-158 493 chr3L 19220633 19220637 chr3L 22908067 22908067 5 3687432 21.5 10.0 15.8 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-158 494 chr3L 22909018 22909052 chr3L 22909109 22909123 7 87 2.0 2.0 2.0 2.3 105 chr3L 22909018 intergenic CR45661 + chr3L 22909070 intergenic CR45661 + chr3L 22909123 intergenic CR45661 + chr3L_7_22905001 chr3L_22905001 RAL-158 495 chr3L 24168631 24168645 chr3L 24176392 24176405 ZAM 7 7761 4.0 3.5 3.8 1.5 7774 chr3L 24168631 intron Snap25 + chr3L 24172518 intron Snap25 + chr3L 24176405 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-158 496 chr3L 24168646 24168652 chr3L 24176391 24176408 ZAM 4 7753 3.5 3.5 3.5 0.9 7762 chr3L 24168646 intron Snap25 + chr3L 24172527 intron Snap25 + chr3L 24176408 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-158 497 chr3L 25635721 25635745 chr3L 25635991 25636017 5 271 1.0 1.5 1.2 2.3 296 chr3L 25635721 intron CG41343 - chr3L 25635869 intron CG41343 - chr3L 25636017 intron CG41343 - chr3L_5_25635001 chr3L_25635001 RAL-158 498 chr3L 27390697 27390710 chr3L 27390775 27390789 4 79 22.5 24.5 23.5 0.2 92 chr3L 27390697 intron Dbp80 + chr3L 27390743 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-158 499 chr3R 2534136 2534154 chr3R 2541705 2541723 4 7568 7.0 11.0 9.0 0.4 7587 chr3R 2534136 intergenic not near genes chr3R 2537930 intergenic not near genes chr3R 2541723 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-158 500 chr3R 2534159 2534166 chr3R 2541700 2541713 4 7552 4.5 10.0 7.2 0.5 7554 chr3R 2534159 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541713 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-158 501 chr3R 2556884 2556911 chr3R 2557618 2557644 5 735 7.5 3.5 5.5 0.8 760 chr3R 2556884 intron CG41056 - chr3R 2557264 intron CG41056 - chr3R 2557644 intron CG41056 - chr3R_5_2555001 chr3R_2555001 RAL-158 502 chr3R 4161537 4161561 chr3R 4161614 4161637 5 73 2.0 3.0 2.5 1.4 100 chr3R 4161537 3` UTR CG40198 - chr3R 4161587 3` UTR CG40198 - chr3R 4161637 exon CG40198 - chr3R_5_4160001 chr3R_4160001 RAL-158 503 chr3R 4609547 4609569 chr3R 4610710 4610733 1360 4 1162 5.5 1.0 3.2 1.0 1186 chr3R 4609547 intergenic not near genes chr3R 4610140 intergenic not near genes chr3R 4610733 intergenic not near genes chr3R_4_4610001 chr3R_4610001 RAL-158 504 chr3R 4680715 4680738 chr3R 4680794 4680798 4 74 0.5 1.5 1.0 2.0 83 chr3R 4680715 intron CG43427 + chr3R 4680756 intron CG43427 + chr3R 4680798 5` UTR CG43427 + chr3R_4_4680001 chr3R_4680001 RAL-158 505 chr3R 4753251 4753278 chr3R 4757542 4757567 F-element 5 4292 0.5 4.5 2.5 1.4 4316 chr3R 4753251 intron,intron atms +,CG44098 - chr3R 4755409 intron,intron atms +,CG44098 - chr3R 4757567 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-158 506 chr3R 4769171 4769191 chr3R 4769247 4769255 4 74 3.0 4.0 3.5 0.9 84 chr3R 4769171 intron,intron atms +,CG44098 - chr3R 4769213 intron,intron atms +,CG44098 - chr3R 4769255 intron,intron atms +,CG44098 - chr3R_4_4765001 chr3R_4765001 RAL-158 507 chr3R 4861566 4861593 chr3R 4861647 4861668 7 75 9.0 4.0 6.5 0.9 102 chr3R 4861566 intron opa + chr3R 4861617 intron opa + chr3R 4861668 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-158 508 chr3R 5278094 5278122 chr3R 5278173 5278203 6 79 1.0 2.5 1.8 2.1 109 chr3R 5278094 intron mtd - chr3R 5278148 intron mtd - chr3R 5278203 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-158 509 chr3R 5338406 5338428 chr3R 5343569 5343605 Rt1c 6 5172 4.5 2.0 3.2 1.4 5199 chr3R 5338406 intron mtd - chr3R 5341006 intron mtd - chr3R 5343605 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-158 510 chr3R 5688788 5688808 chr3R 5688907 5688929 4 120 3.5 3.5 3.5 0.9 141 chr3R 5688788 intron plx + chr3R 5688858 intron plx + chr3R 5688929 intron plx + chr3R_4_5685001 chr3R_5685001 RAL-158 511 chr3R 5712082 5712108 chr3R 5712170 5712195 6 88 2.5 0.5 1.5 2.4 113 chr3R 5712082 3` UTR plx + chr3R 5712138 3` UTR plx + chr3R 5712195 3` UTR plx + chr3R_6_5710001 chr3R_5710001 RAL-158 512 chr3R 5746030 5746046 chr3R 5746258 5746287 pogo 5 237 2.0 4.0 3.0 1.2 257 chr3R 5746030 3` UTR Madm + chr3R 5746158 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-158 513 chr3R 5769232 5769264 chr3R 5769330 5769346 7 95 1.0 1.5 1.2 3.2 114 chr3R 5769232 intron CG2082 - chr3R 5769289 intron CG2082 - chr3R 5769346 intron CG2082 - chr3R_7_5765001 chr3R_5765001 RAL-158 514 chr3R 5840825 5840853 chr3R 5840914 5840942 12 88 3.5 2.0 2.8 3.2 117 chr3R 5840825 intergenic CG1213 + chr3R 5840884 intergenic CG1213 + chr3R 5840942 intergenic CG1213 + chr3R_12_5840001 chr3R_5840001 RAL-158 515 chr3R 5989348 5989358 chr3R 5989431 5989440 5 82 3.5 2.5 3.0 1.2 92 chr3R 5989348 5` UTR CR44927 + chr3R 5989394 5` UTR CR44927 + chr3R 5989440 5` UTR CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-158 516 chr3R 6015960 6015990 chr3R 6024441 6024471 Tirant 10 8478 2.5 3.5 3.0 2.5 8511 chr3R 6015960 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024471 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-158 517 chr3R 6087687 6087714 chr3R 6087956 6087969 7 267 1.5 3.5 2.5 2.0 282 chr3R 6087687 intergenic not near genes chr3R 6087828 intergenic not near genes chr3R 6087969 intergenic not near genes chr3R_7_6085001 chr3R_6085001 RAL-158 518 chr3R 6206285 6206320 chr3R 6206496 6206496 BS 11 208 1.5 2.5 2.0 3.7 211 chr3R 6206285 exon Osi24 + chr3R 6206390 intron Osi24 + chr3R 6206496 intron Osi24 + chr3R_11_6205001 chr3R_6205001 RAL-158 519 chr3R 6804204 6804226 chr3R 6804305 6804320 4 93 1.0 1.0 1.0 2.0 116 chr3R 6804204 intergenic not near genes chr3R 6804262 intergenic not near genes chr3R 6804320 intergenic not near genes chr3R_4_6800001 chr3R_6800001 RAL-158 520 chr3R 7092784 7092796 chr3R 7093348 7093360 8 564 2.0 2.5 2.2 2.5 576 chr3R 7092784 3` UTR CR43685 - chr3R 7093072 intron CR43685 - chr3R 7093360 3` UTR CR43685 - chr3R_8_7090001 chr3R_7090001 RAL-158 521 chr3R 7092803 7092814 chr3R 7093347 7093377 6 553 1.0 2.0 1.5 2.4 574 chr3R 7092803 3` UTR CR43685 - chr3R 7093090 intron CR43685 - chr3R 7093377 3` UTR CR43685 - chr3R_6_7090001 chr3R_7090001 RAL-158 522 chr3R 7105321 7105350 chr3R 7105404 7105433 9 82 0.5 2.0 1.2 4.1 112 chr3R 7105321 intron Alh - chr3R 7105377 intron Alh - chr3R 7105433 intron Alh - chr3R_9_7105001 chr3R_7105001 RAL-158 523 chr3R 7302303 7302319 chr3R 7302395 7302411 5 89 4.5 3.0 3.8 1.0 108 chr3R 7302303 intron rn - chr3R 7302357 intron rn - chr3R 7302411 intron rn - chr3R_5_7300001 chr3R_7300001 RAL-158 524 chr3R 7481834 7481862 chr3R 7481912 7481917 4 72 1.0 4.0 2.5 1.1 83 chr3R 7481834 intergenic not near genes chr3R 7481876 intergenic not near genes chr3R 7481917 intergenic not near genes chr3R_4_7480001 chr3R_7480001 RAL-158 525 chr3R 7556934 7556964 chr3R 7557027 7557043 9 86 2.0 1.5 1.8 3.2 109 chr3R 7556934 intergenic not near genes chr3R 7556988 intergenic not near genes chr3R 7557043 intergenic not near genes chr3R_9_7555001 chr3R_7555001 RAL-158 526 chr3R 7744936 7744964 chr3R 7745201 7745202 6 256 2.5 3.0 2.8 1.6 266 chr3R 7744936 intergenic not near genes chr3R 7745069 intergenic not near genes chr3R 7745202 intergenic not near genes chr3R_6_7745001 chr3R_7745001 RAL-158 527 chr3R 8090273 8090303 chr3R 8090450 8090464 6 167 1.5 0.0 0.8 3.3 191 chr3R 8090273 5` UTR CR44330 + chr3R 8090368 intergenic CR44330 + chr3R 8090464 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-158 528 chr3R 8101763 8101791 chr3R 8104847 8104874 G2 10 3083 2.0 3.0 2.5 2.9 3111 chr3R 8101763 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104874 3` UTR CG7900 + chr3R_10_8100001 chr3R_8100001 RAL-158 529 chr3R 8182655 8182684 chr3R 8182749 8182778 5 92 1.0 3.5 2.2 1.6 123 chr3R 8182655 intergenic not near genes chr3R 8182716 intergenic not near genes chr3R 8182778 intergenic not near genes chr3R_5_8180001 chr3R_8180001 RAL-158 530 chr3R 8339241 8339247 chr3R 21907534 21907536 14 13568289 15.0 17.5 16.2 0.8 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_14_15120001 chr3R_15120001 RAL-158 531 chr3R 8393574 8393604 chr3R 8393658 8393669 5 72 2.5 1.5 2.0 1.7 95 chr3R 8393574 intron CG45263 - chr3R 8393622 intron CG45263 - chr3R 8393669 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-158 532 chr3R 8403011 8403040 chr3R 8412171 8412206 roo 10 9159 4.0 3.0 3.5 2.2 9195 chr3R 8403011 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-158 533 chr3R 8570476 8570509 chr3R 8575112 8575145 HMS-Beagle 7 4634 2.0 0.5 1.2 3.2 4669 chr3R 8570476 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575145 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-158 534 chr3R 8601772 8601798 chr3R 8610919 8610924 roo 4 9143 4.0 0.5 2.2 1.2 9152 chr3R 8601772 intron 5-HT2B + chr3R 8606348 intron 5-HT2B + chr3R 8610924 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-158 535 chr3R 8707369 8707391 chr3R 8709808 8709814 jockey 8 2435 2.5 3.5 3.0 2.0 2445 chr3R 8707369 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709814 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-158 536 chr3R 9101846 9101858 chr3R 9101937 9101956 4 96 2.0 1.0 1.5 1.6 110 chr3R 9101846 intron pum - chr3R 9101901 intron pum - chr3R 9101956 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-158 537 chr3R 9107459 9107496 chr3R 9107563 9107600 7 99 1.0 2.5 1.8 2.5 141 chr3R 9107459 intron pum - chr3R 9107530 intron pum - chr3R 9107600 intron pum - chr3R_7_9105001 chr3R_9105001 RAL-158 538 chr3R 9204254 9204279 chr3R 9204336 9204366 7 79 2.5 1.5 2.0 2.3 112 chr3R 9204254 intron pum - chr3R 9204310 intron pum - chr3R 9204366 intron pum - chr3R_7_9200001 chr3R_9200001 RAL-158 539 chr3R 9319577 9319609 chr3R 9320008 9320044 jockey 6 433 2.0 1.5 1.8 2.1 467 chr3R 9319577 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-158 540 chr3R 9382828 9382848 chr3R 9382946 9382949 4 117 1.5 1.5 1.5 1.6 121 chr3R 9382828 intron FER - chr3R 9382888 intron FER - chr3R 9382949 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-158 541 chr3R 9853177 9853207 chr3R 9853286 9853316 7 105 4.0 3.0 3.5 1.6 139 chr3R 9853177 intron Teh1 - chr3R 9853246 intron Teh1 - chr3R 9853316 intron Teh1 - chr3R_7_9850001 chr3R_9850001 RAL-158 542 chr3R 9898797 9898810 chr3R 9898889 9898902 4 90 1.0 1.0 1.0 2.0 105 chr3R 9898797 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898902 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-158 543 chr3R 10151083 10151116 chr3R 10151160 10151193 4 70 2.5 2.5 2.5 1.1 110 chr3R 10151083 intron Invadolysin + chr3R 10151138 intron Invadolysin + chr3R 10151193 intron,exon Invadolysin +,CG34303 - chr3R_4_10150001 chr3R_10150001 RAL-158 544 chr3R 10174141 10174155 chr3R 10174207 10174237 4 76 2.0 3.0 2.5 1.1 96 chr3R 10174141 intron CG12814 - chr3R 10174189 intron CG12814 - chr3R 10174237 intron CG12814 - chr3R_4_10170001 chr3R_10170001 RAL-158 545 chr3R 10282072 10282085 chr3R 10282183 10282196 5 111 2.5 3.5 3.0 1.2 124 chr3R 10282072 intron CG43143 + chr3R 10282134 intron CG43143 + chr3R 10282196 intron CG43143 + chr3R_5_10280001 chr3R_10280001 RAL-158 546 chr3R 10417473 10417492 chr3R 10417808 10417827 5 333 4.0 0.5 2.2 1.6 354 chr3R 10417473 intergenic not near genes chr3R 10417650 intergenic not near genes chr3R 10417827 intergenic not near genes chr3R_5_10415001 chr3R_10415001 RAL-158 547 chr3R 10660155 10660176 chr3R 10660262 10660283 5 104 1.5 0.5 1.0 2.5 128 chr3R 10660155 intergenic not near genes chr3R 10660219 intergenic not near genes chr3R 10660283 intergenic not near genes chr3R_5_10660001 chr3R_10660001 RAL-158 548 chr3R 10723779 10723795 chr3R 10723869 10723887 4 91 0.5 0.5 0.5 2.7 108 chr3R 10723779 intergenic not near genes chr3R 10723833 intergenic not near genes chr3R 10723887 intergenic not near genes chr3R_4_10720001 chr3R_10720001 RAL-158 549 chr3R 10727643 10727674 chr3R 10727722 10727753 9 73 3.5 3.5 3.5 2.0 110 chr3R 10727643 intergenic not near genes chr3R 10727698 intergenic not near genes chr3R 10727753 intergenic not near genes chr3R_9_10725001 chr3R_10725001 RAL-158 550 chr3R 10904923 10904936 chr3R 10905127 10905140 4 202 2.0 2.0 2.0 1.3 217 chr3R 10904923 intergenic not near genes chr3R 10905032 intergenic not near genes chr3R 10905140 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-158 551 chr3R 10920061 10920073 chr3R 10920139 10920151 4 78 0.5 6.0 3.2 1.0 90 chr3R 10920061 intergenic not near genes chr3R 10920106 intergenic not near genes chr3R 10920151 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-158 552 chr3R 11242272 11242282 chr3R 11242349 11242366 4 84 3.0 4.0 3.5 0.9 94 chr3R 11242272 3` UTR CG17734 - chr3R 11242319 3` UTR CG17734 - chr3R 11242366 3` UTR CG17734 - chr3R_4_11240001 chr3R_11240001 RAL-158 553 chr3R 11307188 11307221 chr3R 11307275 11307308 6 87 3.5 2.5 3.0 1.5 120 chr3R 11307188 intergenic not near genes chr3R 11307248 intergenic not near genes chr3R 11307308 intergenic not near genes chr3R_6_11305001 chr3R_11305001 RAL-158 554 chr3R 11710208 11710237 chr3R 11710285 11710315 10 77 3.5 2.5 3.0 2.5 107 chr3R 11710208 intergenic not near genes chr3R 11710262 intergenic not near genes chr3R 11710315 intergenic not near genes chr3R_10_11710001 chr3R_11710001 RAL-158 555 chr3R 11734162 11734184 chr3R 11734279 11734303 7 118 3.5 2.5 3.0 1.8 141 chr3R 11734162 intergenic not near genes chr3R 11734232 intergenic not near genes chr3R 11734303 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-158 556 chr3R 11909362 11909386 chr3R 11909437 11909449 7 70 3.0 2.5 2.8 1.8 87 chr3R 11909362 intron Cad87A - chr3R 11909406 intron Cad87A - chr3R 11909449 intron Cad87A - chr3R_7_11905001 chr3R_11905001 RAL-158 557 chr3R 12082020 12082029 chr3R 12082096 12082105 6 76 2.5 2.5 2.5 1.7 85 chr3R 12082020 intron CG14741 - chr3R 12082062 intron CG14741 - chr3R 12082105 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-158 558 chr3R 12182958 12182981 chr3R 12183039 12183052 6 81 1.0 1.0 1.0 3.0 94 chr3R 12182958 intergenic not near genes chr3R 12183005 intergenic not near genes chr3R 12183052 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-158 559 chr3R 12321973 12322004 chr3R 12322052 12322054 4 72 2.0 2.0 2.0 1.3 81 chr3R 12321973 intergenic not near genes chr3R 12322014 intergenic not near genes chr3R 12322054 intergenic not near genes chr3R_4_12320001 chr3R_12320001 RAL-158 560 chr3R 12331146 12331180 chr3R 12331224 12331258 7 74 2.5 1.5 2.0 2.3 112 chr3R 12331146 intergenic not near genes chr3R 12331202 intergenic not near genes chr3R 12331258 intergenic not near genes chr3R_7_12330001 chr3R_12330001 RAL-158 561 chr3R 13067838 13067865 chr3R 13067917 13067921 6 76 2.5 1.5 2.0 2.0 83 chr3R 13067838 intron sim + chr3R 13067880 intron sim + chr3R 13067921 intron sim + chr3R_6_13065001 chr3R_13065001 RAL-158 562 chr3R 13659625 13659632 chr3R 13659755 13659784 4 146 7.5 0.0 3.8 0.8 159 chr3R 13659625 exon Hrb87F - chr3R 13659704 intron Hrb87F - chr3R 13659784 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-158 563 chr3R 13693028 13693028 chr3R 21907534 21907535 6 8214507 1.5 17.5 9.5 0.6 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_6_17800001 chr3R_17800001 RAL-158 564 chr3R 13782059 13782082 chr3R 13782140 13782163 4 81 1.5 3.5 2.5 1.1 104 chr3R 13782059 exon CG9286 + chr3R 13782111 intergenic CG9286 +,Dip-B + chr3R 13782163 intergenic CG9286 +,Dip-B + chr3R_4_13780001 chr3R_13780001 RAL-158 565 chr3R 13863681 13863716 chr3R 13863769 13863804 5 84 1.5 1.0 1.2 2.3 123 chr3R 13863681 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_5_13860001 chr3R_13860001 RAL-158 566 chr3R 13941440 13941456 chr3R 13941515 13941515 4 74 1.5 0.0 0.8 2.2 75 chr3R 13941440 intergenic not near genes chr3R 13941478 intergenic not near genes chr3R 13941515 intergenic not near genes chr3R_4_13940001 chr3R_13940001 RAL-158 567 chr3R 14141410 14141418 chr3R 14141481 14141492 7 80 1.5 7.0 4.2 1.3 82 chr3R 14141410 intergenic not near genes chr3R 14141451 intergenic not near genes chr3R 14141492 intergenic not near genes chr3R_7_14140001 chr3R_14140001 RAL-158 568 chr3R 14194450 14194458 chr3R 14203580 14203607 roo 4 9140 4.0 0.5 2.2 1.2 9157 chr3R 14194450 intron Dop1R1 - chr3R 14199028 intron Dop1R1 - chr3R 14203607 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-158 569 chr3R 14291106 14291116 chr3R 14291200 14291210 4 94 0.0 3.5 1.8 1.4 104 chr3R 14291106 intron CG12207 + chr3R 14291158 intron CG12207 + chr3R 14291210 intron CG12207 + chr3R_4_14290001 chr3R_14290001 RAL-158 570 chr3R 14579365 14579373 chr3R 14579434 14579462 4 81 6.5 3.0 4.8 0.7 97 chr3R 14579365 intron stumps + chr3R 14579414 intron stumps + chr3R 14579462 intron stumps + chr3R_4_14575001 chr3R_14575001 RAL-158 571 chr3R 14704388 14704413 chr3R 14704465 14704489 4 77 0.5 3.5 2.0 1.3 101 chr3R 14704388 intron kibra - chr3R 14704438 intron kibra - chr3R 14704489 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-158 572 chr3R 14812221 14812241 chr3R 14812301 14812332 7 79 2.5 4.5 3.5 1.6 111 chr3R 14812221 intron btsz - chr3R 14812276 intron btsz - chr3R 14812332 intron btsz - chr3R_7_14810001 chr3R_14810001 RAL-158 573 chr3R 14838026 14838056 chr3R 14838113 14838146 7 84 2.0 1.5 1.8 2.5 120 chr3R 14838026 intron btsz - chr3R 14838086 intron btsz - chr3R 14838146 intron btsz - chr3R_7_14835001 chr3R_14835001 RAL-158 574 chr3R 14954811 14954840 chr3R 14955020 14955051 5 210 0.0 0.5 0.2 4.2 240 chr3R 14954811 intergenic not near genes chr3R 14954931 intergenic not near genes chr3R 14955051 intergenic not near genes chr3R_5_14950001 chr3R_14950001 RAL-158 575 chr3R 15184542 15184569 chr3R 15184624 15184644 6 80 2.5 6.0 4.2 1.2 102 chr3R 15184542 intron Gyc88E + chr3R 15184593 intron Gyc88E + chr3R 15184644 intron Gyc88E + chr3R_6_15180001 chr3R_15180001 RAL-158 576 chr3R 15585307 15585329 chr3R 15585404 15585428 7 94 0.5 2.5 1.5 2.8 121 chr3R 15585307 intergenic not near genes chr3R 15585368 intergenic not near genes chr3R 15585428 intergenic not near genes chr3R_7_15585001 chr3R_15585001 RAL-158 577 chr3R 15601167 15601192 chr3R 15608689 15608714 412 5 7519 3.5 3.5 3.5 1.1 7547 chr3R 15601167 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-158 578 chr3R 15790161 15790289 chr3R 15790256 15790407 5 113 2.5 2.5 2.5 1.4 246 chr3R 15790161 exon c(3)G - chr3R 15790284 exon c(3)G - chr3R 15790407 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-158 579 chr3R 15808075 15808097 chr3R 15808162 15808191 5 87 1.5 3.5 2.5 1.4 116 chr3R 15808075 intron alpha-Man-IIb + chr3R 15808133 intron alpha-Man-IIb + chr3R 15808191 intron alpha-Man-IIb + chr3R_5_15805001 chr3R_15805001 RAL-158 580 chr3R 16284889 16284914 chr3R 16284968 16284974 7 75 5.0 2.5 3.8 1.5 85 chr3R 16284889 intron gish + chr3R 16284932 intron gish + chr3R 16284974 intron gish + chr3R_7_16280001 chr3R_16280001 RAL-158 581 chr3R 16675316 16675335 chr3R 16675430 16675448 9 114 2.0 0.5 1.2 4.1 132 chr3R 16675316 intron Ubx - chr3R 16675382 intron Ubx - chr3R 16675448 intron Ubx - chr3R_9_16675001 chr3R_16675001 RAL-158 582 chr3R 16756326 16756354 chr3R 16762517 16762544 diver 4 6191 0.5 1.5 1.0 2.0 6218 chr3R 16756326 intron bxd - chr3R 16759435 intron bxd - chr3R 16762544 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-158 583 chr3R 17317593 17317608 chr3R 17317672 17317688 4 80 1.0 1.5 1.2 1.8 95 chr3R 17317593 intergenic not near genes chr3R 17317640 intergenic not near genes chr3R 17317688 intergenic not near genes chr3R_4_17315001 chr3R_17315001 RAL-158 584 chr3R 17355497 17355520 chr3R 17355569 17355598 5 72 0.5 2.0 1.2 2.3 101 chr3R 17355497 intron beat-IIa - chr3R 17355548 intron beat-IIa - chr3R 17355598 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-158 585 chr3R 17454100 17454128 chr3R 17454319 17454340 7 219 1.5 1.5 1.5 2.8 240 chr3R 17454100 intergenic not near genes chr3R 17454220 intergenic not near genes chr3R 17454340 intergenic not near genes chr3R_7_17450001 chr3R_17450001 RAL-158 586 chr3R 17464992 17465009 chr3R 17465228 17465240 5 229 5.0 2.5 3.8 1.0 248 chr3R 17464992 intergenic not near genes chr3R 17465116 intergenic not near genes chr3R 17465240 intergenic not near genes chr3R_5_17465001 chr3R_17465001 RAL-158 587 chr3R 17465013 17465014 chr3R 17465224 17465242 4 219 4.0 1.5 2.8 1.1 229 chr3R 17465013 intergenic not near genes chr3R 17465128 intergenic not near genes chr3R 17465242 intergenic not near genes chr3R_4_17465001 chr3R_17465001 RAL-158 588 chr3R 17472324 17472343 chr3R 17472429 17472439 6 101 2.5 5.0 3.8 1.2 115 chr3R 17472324 intergenic not near genes chr3R 17472382 intergenic not near genes chr3R 17472439 intergenic not near genes chr3R_6_17470001 chr3R_17470001 RAL-158 589 chr3R 17845204 17845217 chr3R 17845270 17845294 5 72 1.0 3.5 2.2 1.6 90 chr3R 17845204 intron tinc + chr3R 17845249 intron tinc + chr3R 17845294 intron tinc + chr3R_5_17845001 chr3R_17845001 RAL-158 590 chr3R 17925855 17925886 chr3R 17927318 17927341 hobo 9 1456 1.0 6.0 3.5 2.0 1486 chr3R 17925855 intron cpo + chr3R 17926598 intron cpo + chr3R 17927341 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-158 591 chr3R 18766778 18766808 chr3R 18766856 18766886 7 77 1.5 1.0 1.2 3.2 108 chr3R 18766778 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766886 intron CG7720 - chr3R_7_18765001 chr3R_18765001 RAL-158 592 chr3R 18812075 18812108 chr3R 18812152 18812174 13 74 2.0 2.0 2.0 4.3 99 chr3R 18812075 intron CG18208 - chr3R 18812124 intron CG18208 - chr3R 18812174 intron CG18208 - chr3R_13_18810001 chr3R_18810001 RAL-158 593 chr3R 18817509 18817538 chr3R 18817607 18817630 4 96 0.5 0.5 0.5 2.7 121 chr3R 18817509 intron CG18208 - chr3R 18817570 intron CG18208 - chr3R 18817630 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-158 594 chr3R 18932563 18932582 chr3R 18932731 18932737 4 164 2.5 2.5 2.5 1.1 174 chr3R 18932563 intron CG42613 + chr3R 18932650 intron CG42613 + chr3R 18932737 intron CG42613 + chr3R_4_18930001 chr3R_18930001 RAL-158 595 chr3R 19079588 19079601 chr3R 19079657 19079680 4 75 2.0 3.5 2.8 1.1 92 chr3R 19079588 intron cdi - chr3R 19079634 intron cdi - chr3R 19079680 intron cdi - chr3R_4_19075001 chr3R_19075001 RAL-158 596 chr3R 19140265 19140299 chr3R 19140710 19140746 4 440 3.0 1.5 2.2 1.2 481 chr3R 19140265 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140746 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-158 597 chr3R 19735714 19735740 chr3R 19735820 19735846 4 102 0.0 3.0 1.5 1.6 132 chr3R 19735714 intron GluClalpha + chr3R 19735780 intron GluClalpha + chr3R 19735846 intron GluClalpha + chr3R_4_19735001 chr3R_19735001 RAL-158 598 chr3R 19859965 19859990 chr3R 19860046 19860055 7 75 5.0 3.5 4.2 1.3 90 chr3R 19859965 intron Ire1 - chr3R 19860010 intron Ire1 - chr3R 19860055 intron Ire1 - chr3R_7_19860001 chr3R_19860001 RAL-158 599 chr3R 20020170 20020182 chr3R 20020293 20020306 5 124 1.0 0.5 0.8 2.8 136 chr3R 20020170 intron CG4433 - chr3R 20020238 intron CG4433 - chr3R 20020306 intron CG4433 - chr3R_5_20020001 chr3R_20020001 RAL-158 600 chr3R 20218583 20218590 chr3R 20218824 20218850 4 252 2.0 1.0 1.5 1.6 267 chr3R 20218583 intron Nlg4 + chr3R 20218716 intron Nlg4 + chr3R 20218850 intron Nlg4 + chr3R_4_20215001 chr3R_20215001 RAL-158 601 chr3R 20441407 20441435 chr3R 20441499 20441530 5 85 1.0 3.0 2.0 1.7 123 chr3R 20441407 intron Gfrl - chr3R 20441468 intron Gfrl - chr3R 20441530 intron Gfrl - chr3R_5_20440001 chr3R_20440001 RAL-158 602 chr3R 20506589 20506615 chr3R 20507392 20507418 BS 6 802 1.5 1.5 1.5 2.4 829 chr3R 20506589 intergenic Or92a + chr3R 20507004 intergenic CG4288 - chr3R 20507418 3` UTR CG4288 - chr3R_6_20505001 chr3R_20505001 RAL-158 603 chr3R 20516540 20516563 chr3R 20516896 20516915 5 355 1.5 1.0 1.2 2.3 375 chr3R 20516540 intergenic not near genes chr3R 20516728 intergenic not near genes chr3R 20516915 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-158 604 chr3R 20532037 20532065 chr3R 20532267 20532295 5 227 0.5 2.0 1.2 2.3 258 chr3R 20532037 intergenic not near genes chr3R 20532166 intergenic not near genes chr3R 20532295 intergenic not near genes chr3R_5_20530001 chr3R_20530001 RAL-158 605 chr3R 20555509 20555540 chr3R 20555817 20555848 4 308 4.5 3.0 3.8 0.8 339 chr3R 20555509 intron att-ORFA - chr3R 20555678 intron att-ORFA - chr3R 20555848 intron att-ORFA - chr3R_4_20555001 chr3R_20555001 RAL-158 606 chr3R 20673343 20673372 chr3R 20673422 20673433 5 72 4.0 3.0 3.5 1.1 90 chr3R 20673343 intergenic not near genes chr3R 20673388 intergenic not near genes chr3R 20673433 intergenic not near genes chr3R_5_20670001 chr3R_20670001 RAL-158 607 chr3R 20733762 20734017 chr3R 20733852 20734087 12 85 1.0 3.5 2.2 3.8 325 chr3R 20733762 intergenic not near genes chr3R 20733924 intergenic not near genes chr3R 20734087 intergenic not near genes chr3R_12_20730001 chr3R_20730001 RAL-158 608 chr3R 20764412 20764444 chr3R 20764506 20764537 10 93 3.5 2.5 3.0 2.5 125 chr3R 20764412 intron Syp + chr3R 20764474 intron Syp + chr3R 20764537 intron Syp + chr3R_10_20760001 chr3R_20760001 RAL-158 609 chr3R 20867777 20867803 chr3R 20867858 20867891 12 85 2.5 4.0 3.2 2.9 114 chr3R 20867777 intergenic not near genes chr3R 20867834 intergenic not near genes chr3R 20867891 intergenic not near genes chr3R_12_20865001 chr3R_20865001 RAL-158 610 chr3R 20870249 20870284 chr3R 20870334 20870351 11 80 3.0 3.5 3.2 2.6 102 chr3R 20870249 intergenic not near genes chr3R 20870300 intergenic not near genes chr3R 20870351 intergenic not near genes chr3R_11_20870001 chr3R_20870001 RAL-158 611 chr3R 20938905 20938935 chr3R 20938991 20939021 7 82 2.0 4.5 3.2 1.7 116 chr3R 20938905 intron CG31191 - chr3R 20938963 intron CG31191 - chr3R 20939021 intron CG31191 - chr3R_7_20935001 chr3R_20935001 RAL-158 612 chr3R 21041101 21041126 chr3R 21041254 21041277 5 150 2.5 0.5 1.5 2.0 176 chr3R 21041101 exon Dhc93AB - chr3R 21041189 intron Dhc93AB - chr3R 21041277 intron Dhc93AB - chr3R_5_21040001 chr3R_21040001 RAL-158 613 chr3R 21163246 21163274 chr3R 21163324 21163352 4 78 1.0 3.0 2.0 1.3 106 chr3R 21163246 intron SNF4Agamma + chr3R 21163299 intron SNF4Agamma + chr3R 21163352 intron SNF4Agamma + chr3R_4_21160001 chr3R_21160001 RAL-158 614 chr3R 21240452 21240477 chr3R 21240544 21240555 5 85 4.0 1.0 2.5 1.4 103 chr3R 21240452 intergenic not near genes chr3R 21240504 intergenic not near genes chr3R 21240555 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-158 615 chr3R 21535482 21535505 chr3R 21535717 21535743 4 237 1.0 1.0 1.0 2.0 261 chr3R 21535482 intergenic CR44033 + chr3R 21535612 intergenic CR44033 + chr3R 21535743 intergenic CR44033 + chr3R_4_21535001 chr3R_21535001 RAL-158 616 chr3R 21907534 21907534 chr3R 28831801 28831802 10 6924268 19.0 12.0 15.5 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-158 617 chr3R 21907535 21907535 chr3R 28831801 28831802 15 6924267 18.5 12.0 15.2 0.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-158 618 chr3R 21907536 21907536 chr3R 28831801 28831803 18 6924266 18.0 12.0 15.0 1.1 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-158 619 chr3R 22040138 22040160 chr3R 22040315 22040337 5 176 2.0 0.5 1.2 2.3 199 chr3R 22040138 intergenic not near genes chr3R 22040238 intergenic not near genes chr3R 22040337 intergenic not near genes chr3R_5_22040001 chr3R_22040001 RAL-158 620 chr3R 22428584 22428607 chr3R 22428656 22428678 7 74 1.5 4.0 2.8 1.8 94 chr3R 22428584 intron CG13847 - chr3R 22428631 intron CG13847 - chr3R 22428678 intron CG13847 - chr3R_7_22425001 chr3R_22425001 RAL-158 621 chr3R 22450541 22450577 chr3R 22453181 22453206 NOF 8 2634 0.5 4.5 2.5 2.3 2665 chr3R 22450541 intron CG34376 + chr3R 22451874 intron CG34376 + chr3R 22453206 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-158 622 chr3R 22538466 22538473 chr3R 22538533 22538558 4 74 1.5 1.0 1.2 1.8 92 chr3R 22538466 intron CG5326 - chr3R 22538512 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-158 623 chr3R 22797773 22797932 chr3R 22797845 22798007 5 80 0.0 0.0 0.0 5.0 234 chr3R 22797773 intergenic not near genes chr3R 22797890 intergenic not near genes chr3R 22798007 intergenic not near genes chr3R_5_22795001 chr3R_22795001 RAL-158 624 chr3R 23073654 23073689 chr3R 23073742 23073778 7 85 0.5 1.5 1.0 3.5 124 chr3R 23073654 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_7_23070001 chr3R_23070001 RAL-158 625 chr3R 23684709 23684717 chr3R 23685194 23685197 roo 4 482 4.0 8.5 6.2 0.6 488 chr3R 23684709 intron CG18754 + chr3R 23684953 intron CG18754 + chr3R 23685197 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-158 626 chr3R 23868211 23868245 chr3R 23868289 23868316 11 75 5.5 4.5 5.0 1.8 105 chr3R 23868211 intron Pli - chr3R 23868264 intron Pli - chr3R 23868316 intron Pli - chr3R_11_23865001 chr3R_23865001 RAL-158 627 chr3R 23944910 23944933 chr3R 23944995 23945018 7 81 2.5 6.0 4.2 1.3 108 chr3R 23944910 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945018 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-158 628 chr3R 24024987 24024995 chr3R 24025079 24025087 4 92 5.5 3.0 4.2 0.8 100 chr3R 24024987 intron KrT95D - chr3R 24025037 intron KrT95D - chr3R 24025087 intron KrT95D - chr3R_4_24025001 chr3R_24025001 RAL-158 629 chr3R 24025002 24025009 chr3R 24025073 24025075 5 80 2.0 2.5 2.2 1.6 73 chr3R 24025002 intron KrT95D - chr3R 24025038 intron KrT95D - chr3R 24025075 intron KrT95D - chr3R_5_24025001 chr3R_24025001 RAL-158 630 chr3R 24076916 24076946 chr3R 24078382 24078385 hobo 9 1458 0.5 3.0 1.8 3.2 1469 chr3R 24076916 intron 4EHP - chr3R 24077650 intron 4EHP - chr3R 24078385 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-158 631 chr3R 24730094 24730119 chr3R 24732468 24732496 Doc 4 2376 4.5 2.0 3.2 1.0 2402 chr3R 24730094 intron tok + chr3R 24731295 intron tok + chr3R 24732496 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-158 632 chr3R 24789982 24790001 chr3R 24790127 24790146 4 145 3.5 2.5 3.0 1.0 164 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790064 intron,5` UTR Ets96B +,CG13634 - chr3R 24790146 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-158 633 chr3R 24927135 24927158 chr3R 24931925 24931938 Doc 5 4786 4.5 3.0 3.8 1.0 4803 chr3R 24927135 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931938 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-158 634 chr3R 25004906 25004922 chr3R 25004989 25005005 5 83 0.0 5.5 2.8 1.3 99 chr3R 25004906 intron tnc + chr3R 25004956 intron tnc + chr3R 25005005 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-158 635 chr3R 25295120 25295144 chr3R 25297680 25297686 6 2545 26.5 21.0 23.8 0.2 2566 chr3R 25295120 exon CG31102 - chr3R 25296403 exon CG31097 - chr3R 25297686 exon CG31097 - chr3R_6_25295001 chr3R_25295001 RAL-158 636 chr3R 25612910 25612943 chr3R 25612987 25613020 10 75 2.5 3.0 2.8 2.6 110 chr3R 25612910 intron Npl4 - chr3R 25612965 intron Npl4 - chr3R 25613020 intron Npl4 - chr3R_10_25610001 chr3R_25610001 RAL-158 637 chr3R 25738654 25738665 chr3R 25738725 25738753 4 82 2.5 1.5 2.0 1.3 99 chr3R 25738654 intron LpR2 - chr3R 25738704 intron LpR2 - chr3R 25738753 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-158 638 chr3R 25832709 25832724 chr3R 25841885 25841906 roo 7 9181 3.0 3.5 3.2 1.7 9197 chr3R 25832709 exon alpha4GT2 + chr3R 25837308 intron alpha4GT2 + chr3R 25841906 exon alpha4GT2 + chr3R_7_25835001 chr3R_25835001 RAL-158 639 chr3R 26072896 26072928 chr3R 26073009 26073042 7 112 3.0 3.0 3.0 1.8 146 chr3R 26072896 intergenic not near genes chr3R 26072969 intergenic not near genes chr3R 26073042 intergenic not near genes chr3R_7_26070001 chr3R_26070001 RAL-158 640 chr3R 26126271 26126285 chr3R 26126376 26126382 5 103 4.0 2.0 3.0 1.2 111 chr3R 26126271 intron CG31324 + chr3R 26126326 intron CG31324 + chr3R 26126382 intron CG31324 + chr3R_5_26125001 chr3R_26125001 RAL-158 641 chr3R 26546009 26546023 chr3R 26546191 26546205 5 181 0.0 1.0 0.5 3.3 196 chr3R 26546009 intron scrib + chr3R 26546107 intron scrib + chr3R 26546205 intron scrib + chr3R_5_26545001 chr3R_26545001 RAL-158 642 chr3R 26607741 26607770 chr3R 26607817 26607843 4 70 2.5 3.0 2.8 1.1 102 chr3R 26607741 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607843 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-158 643 chr3R 26852514 26852545 chr3R 26852589 26852620 5 71 1.0 2.5 1.8 1.8 106 chr3R 26852514 intron Lerp - chr3R 26852567 intron Lerp - chr3R 26852620 intron Lerp - chr3R_5_26850001 chr3R_26850001 RAL-158 644 chr3R 26927297 26927307 chr3R 26927446 26927456 4 149 2.5 5.0 3.8 0.8 159 chr3R 26927297 intron sda + chr3R 26927376 intron sda + chr3R 26927456 intron sda + chr3R_4_26925001 chr3R_26925001 RAL-158 645 chr3R 26960737 26960765 chr3R 26960822 26960854 12 87 2.5 2.5 2.5 3.4 117 chr3R 26960737 intergenic Tsp97E - chr3R 26960796 intergenic Tsp97E - chr3R 26960854 intergenic Tsp97E - chr3R_12_26960001 chr3R_26960001 RAL-158 646 chr3R 27028724 27028752 chr3R 27028803 27028825 4 74 1.5 0.5 1.0 2.0 101 chr3R 27028724 intron RYa-R + chr3R 27028774 intron RYa-R + chr3R 27028825 intron RYa-R + chr3R_4_27025001 chr3R_27025001 RAL-158 647 chr3R 27140513 27140548 chr3R 27148123 27148158 412 13 7610 1.0 1.5 1.2 5.9 7645 chr3R 27140513 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_13_27140001 chr3R_27140001 RAL-158 648 chr3R 27342202 27342227 chr3R 27342324 27342331 5 116 4.0 1.0 2.5 1.4 129 chr3R 27342202 intron CG42534 + chr3R 27342266 intron CG42534 + chr3R 27342331 intron CG42534 + chr3R_5_27340001 chr3R_27340001 RAL-158 649 chr3R 27377473 27377500 chr3R 27377561 27377588 6 88 2.5 0.5 1.5 2.4 115 chr3R 27377473 3` UTR side - chr3R 27377530 3` UTR side - chr3R 27377588 3` UTR side - chr3R_6_27375001 chr3R_27375001 RAL-158 650 chr3R 27385696 27385715 chr3R 27385961 27385984 4 266 4.0 2.5 3.2 1.0 288 chr3R 27385696 intron side - chr3R 27385840 intron side - chr3R 27385984 intron side - chr3R_4_27385001 chr3R_27385001 RAL-158 651 chr3R 27418706 27418716 chr3R 27418791 27418804 4 90 2.0 8.0 5.0 0.7 98 chr3R 27418706 5` UTR side - chr3R 27418755 5` UTR side - chr3R 27418804 5` UTR side - chr3R_4_27415001 chr3R_27415001 RAL-158 652 chr3R 27511254 27511279 chr3R 27511341 27511366 4 87 3.0 4.5 3.8 0.8 112 chr3R 27511254 intergenic not near genes chr3R 27511310 intergenic not near genes chr3R 27511366 intergenic not near genes chr3R_4_27510001 chr3R_27510001 RAL-158 653 chr3R 27648595 27648609 chr3R 27648675 27648676 4 78 4.0 0.5 2.2 1.2 81 chr3R 27648595 intron tau - chr3R 27648636 intron tau - chr3R 27648676 intron tau - chr3R_4_27645001 chr3R_27645001 RAL-158 654 chr3R 27648610 27648869 chr3R 27648673 27648928 7 68 4.5 0.5 2.5 2.0 318 chr3R 27648610 intron tau - chr3R 27648769 intron tau - chr3R 27648928 intron tau - chr3R_7_27645001 chr3R_27645001 RAL-158 655 chr3R 27789108 27789113 chr3R 27789156 27789166 5 58 1.0 2.0 1.5 2.0 58 chr3R 27789108 exon CG34353 - chr3R 27789137 intron CG34353 - chr3R 27789166 intron CG34353 - chr3R_5_27785001 chr3R_27785001 RAL-158 656 chr3R 27856773 27856787 chr3R 27858256 27858270 hopper2 4 1483 2.0 1.0 1.5 1.6 1497 chr3R 27856773 intron CG34353 - chr3R 27857522 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-158 657 chr3R 27875698 27875732 chr3R 27882753 27882765 297 6 7050 2.5 0.5 1.5 2.4 7067 chr3R 27875698 intron CG34353 - chr3R 27879232 intron CG34353 - chr3R 27882765 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-158 658 chr3R 28017946 28017982 chr3R 28018037 28018054 7 87 0.5 1.5 1.0 3.5 108 chr3R 28017946 intergenic not near genes chr3R 28018000 intergenic not near genes chr3R 28018054 intergenic not near genes chr3R_7_28015001 chr3R_28015001 RAL-158 659 chr3R 28173690 28173700 chr3R 28181106 28181130 mdg1 5 7419 2.0 2.0 2.0 1.7 7440 chr3R 28173690 intron CG34354 + chr3R 28177410 intron CG34354 + chr3R 28181130 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-158 660 chr3R 28253356 28253369 chr3R 28255841 28255868 jockey 9 2502 2.5 1.5 2.0 3.0 2512 chr3R 28253356 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255868 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-158 661 chr3R 28352513 28352545 chr3R 28352852 28352883 13 335 2.0 6.5 4.2 2.5 370 chr3R 28352513 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352883 exon Or98b + chr3R_13_28350001 chr3R_28350001 RAL-158 662 chr3R 28363276 28363288 chr3R 28363345 28363353 6 73 1.0 1.5 1.2 2.7 77 chr3R 28363276 intergenic not near genes chr3R 28363314 intergenic not near genes chr3R 28363353 intergenic not near genes chr3R_6_28360001 chr3R_28360001 RAL-158 663 chr3R 28412517 28412540 chr3R 28412592 28412620 7 76 2.5 2.0 2.2 2.2 103 chr3R 28412517 intergenic not near genes chr3R 28412568 intergenic not near genes chr3R 28412620 intergenic not near genes chr3R_7_28410001 chr3R_28410001 RAL-158 664 chr3R 28442169 28442185 chr3R 28442257 28442270 5 86 1.5 4.0 2.8 1.3 101 chr3R 28442169 intron beat-VI + chr3R 28442220 intron beat-VI + chr3R 28442270 intron beat-VI + chr3R_5_28440001 chr3R_28440001 RAL-158 665 chr3R 28479147 28479167 chr3R 28479245 28479264 4 98 2.0 3.5 2.8 1.1 117 chr3R 28479147 intergenic not near genes chr3R 28479206 intergenic not near genes chr3R 28479264 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-158 666 chr3R 28656789 28656799 chr3R 28657672 28657698 6 894 1.0 3.5 2.2 1.9 909 chr3R 28656789 intergenic not near genes chr3R 28657244 intergenic not near genes chr3R 28657698 intergenic not near genes chr3R_6_28655001 chr3R_28655001 RAL-158 667 chr3R 28792867 28792903 chr3R 28797962 28797980 jockey 7 5089 0.5 1.5 1.0 3.5 5113 chr3R 28792867 intergenic not near genes chr3R 28795424 intergenic not near genes chr3R 28797980 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-158 668 chr3R 28830905 28830921 chr3R 28830970 28830999 8 73 1.5 1.5 1.5 3.2 94 chr3R 28830905 intron WASp - chr3R 28830952 intron WASp - chr3R 28830999 intron WASp - chr3R_8_28830001 chr3R_28830001 RAL-158 669 chr3R 21907534 21907536 chr3R 28831801 28831801 31 6924266 18.0 12.0 15.0 1.9 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_31_25365001 chr3R_25365001 RAL-158 670 chr3R 21907534 21907536 chr3R 28831802 28831802 23 6924267 18.0 12.0 15.0 1.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_23_25365001 chr3R_25365001 RAL-158 671 chr3R 29071959 29071990 chr3R 29072404 29072435 4 442 1.0 2.0 1.5 1.6 476 chr3R 29071959 intron CG11873 + chr3R 29072197 intron CG11873 + chr3R 29072435 intron CG11873 + chr3R_4_29070001 chr3R_29070001 RAL-158 672 chr3R 29363098 29363105 chr3R 29363373 29363383 8 282 2.0 1.5 1.8 2.9 285 chr3R 29363098 intergenic not near genes chr3R 29363240 intergenic not near genes chr3R 29363383 intergenic not near genes chr3R_8_29360001 chr3R_29360001 RAL-158 673 chr3R 29375983 29376005 chr3R 29376068 29376089 4 83 4.0 2.0 3.0 1.0 106 chr3R 29375983 intergenic not near genes chr3R 29376036 intergenic not near genes chr3R 29376089 intergenic not near genes chr3R_4_29375001 chr3R_29375001 RAL-158 674 chr3R 29406613 29406648 chr3R 29407899 29407916 jockey 11 1282 1.0 2.0 1.5 4.4 1303 chr3R 29406613 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407916 intron Ptp99A + chr3R_11_29405001 chr3R_29405001 RAL-158 675 chr3R 29472014 29472032 chr3R 29472107 29472108 4 89 2.0 3.5 2.8 1.1 94 chr3R 29472014 intron Ptp99A + chr3R 29472061 intron Ptp99A + chr3R 29472108 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-158 676 chr3R 29539437 29539447 chr3R 29539506 29539523 4 73 1.0 0.0 0.5 2.7 86 chr3R 29539437 intergenic not near genes chr3R 29539480 intergenic not near genes chr3R 29539523 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-158 677 chr3R 29645832 29645856 chr3R 29645909 29645922 6 75 2.0 3.0 2.5 1.7 90 chr3R 29645832 intron Dop1R2 - chr3R 29645877 intron Dop1R2 - chr3R 29645922 intron Dop1R2 - chr3R_6_29645001 chr3R_29645001 RAL-158 678 chr3R 29738262 29738287 chr3R 29739729 29739754 hobo 6 1464 1.0 1.5 1.2 2.7 1492 chr3R 29738262 intergenic CG1969 +,CG7598 + chr3R 29739008 intron CG1969 + chr3R 29739754 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-158 679 chr3R 29758938 29758966 chr3R 29759016 29759044 8 78 3.0 2.0 2.5 2.3 106 chr3R 29758938 3` UTR CR44953 - chr3R 29758991 3` UTR CR44953 - chr3R 29759044 intergenic CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-158 680 chr3R 29826731 29826749 chr3R 29826807 29826843 11 83 0.5 3.0 1.8 3.9 112 chr3R 29826731 intergenic not near genes chr3R 29826787 intergenic Atg16 - chr3R 29826843 intergenic Atg16 - chr3R_11_29825001 chr3R_29825001 RAL-158 681 chr3R 29880582 29880613 chr3R 29880667 29880679 5 73 2.0 3.0 2.5 1.4 97 chr3R 29880582 intron CG31038 + chr3R 29880630 intron CG31038 + chr3R 29880679 intron CG31038 + chr3R_5_29880001 chr3R_29880001 RAL-158 682 chr3R 29963479 29963511 chr3R 29963581 29963612 9 97 3.0 3.5 3.2 2.1 133 chr3R 29963479 intron TkR99D - chr3R 29963546 intron TkR99D - chr3R 29963612 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-158 683 chr3R 30032170 30032177 chr3R 30032247 30032254 4 78 2.0 0.0 1.0 2.0 84 chr3R 30032170 intron Axn + chr3R 30032212 intron Axn + chr3R 30032254 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-158 684 chr3R 30084864 30084879 chr3R 30086331 30086346 hobo 5 1464 1.0 4.0 2.5 1.4 1482 chr3R 30084864 intron sima + chr3R 30085605 intron sima + chr3R 30086346 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-158 685 chr3R 30112958 30112977 chr3R 30113033 30113053 6 74 1.5 1.5 1.5 2.4 95 chr3R 30112958 intron sima + chr3R 30113006 intron sima + chr3R 30113053 intron sima + chr3R_6_30110001 chr3R_30110001 RAL-158 686 chr3R 30262574 30262608 chr3R 30262671 30262691 5 82 2.5 1.5 2.0 1.7 117 chr3R 30262574 intergenic not near genes chr3R 30262632 intergenic not near genes chr3R 30262691 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-158 687 chr3R 30480472 30480508 chr3R 30482940 30482954 jockey 10 2460 5.0 3.5 4.2 1.9 2482 chr3R 30480472 intron PH4alphaEFB + chr3R 30481713 intron PH4alphaEFB + chr3R 30482954 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-158 688 chr3R 30627620 30627638 chr3R 30627683 30627708 5 64 4.0 5.0 4.5 0.9 88 chr3R 30627620 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627708 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-158 689 chr3R 30690164 30690183 chr3R 30690248 30690250 6 80 2.5 7.0 4.8 1.0 86 chr3R 30690164 intergenic Spn100A + chr3R 30690207 intergenic Spn100A + chr3R 30690250 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-158 690 chr3R 30791905 30791921 chr3R 30792021 30792035 5 115 6.0 3.5 4.8 0.9 130 chr3R 30791905 exon wts - chr3R 30791970 intron wts - chr3R 30792035 exon wts - chr3R_5_30790001 chr3R_30790001 RAL-158 691 chr3R 30791923 30791941 chr3R 30792019 30792057 8 106 3.0 3.5 3.2 1.9 134 chr3R 30791923 exon wts - chr3R 30791990 intron wts - chr3R 30792057 exon wts - chr3R_8_30790001 chr3R_30790001 RAL-158 692 chr3R 31026489 31026523 chr3R 31026569 31026604 11 75 2.0 4.0 3.0 2.8 115 chr3R 31026489 intergenic not near genes chr3R 31026546 intergenic not near genes chr3R 31026604 intergenic not near genes chr3R_11_31025001 chr3R_31025001 RAL-158 693 chr3R 31042109 31042133 chr3R 31042196 31042220 5 85 1.0 2.5 1.8 1.8 111 chr3R 31042109 intron CanA1 + chr3R 31042164 intron CanA1 + chr3R 31042220 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-158 694 chr3R 31137167 31137181 chr3R 31137236 31137260 4 75 1.0 2.0 1.5 1.6 93 chr3R 31137167 intron Gycbeta100B + chr3R 31137214 intron Gycbeta100B + chr3R 31137260 intron Gycbeta100B + chr3R_4_31135001 chr3R_31135001 RAL-158 695 chr3R 31279394 31279407 chr3R 31285566 31285584 diver 7 6184 3.0 3.0 3.0 1.8 6190 chr3R 31279394 intergenic not near genes chr3R 31282489 intergenic not near genes chr3R 31285584 intergenic not near genes chr3R_7_31280001 chr3R_31280001 RAL-158 696 chr3R 31323628 31323646 chr3R 31323710 31323720 6 80 3.0 5.5 4.2 1.2 92 chr3R 31323628 intron CG34347 + chr3R 31323674 intron CG34347 + chr3R 31323720 intron CG34347 + chr3R_6_31320001 chr3R_31320001 RAL-158 697 chr3R 31412727 31412742 chr3R 31412801 31412835 6 85 1.5 1.0 1.2 2.7 108 chr3R 31412727 intron Gprk2 + chr3R 31412781 intron Gprk2 + chr3R 31412835 intron Gprk2 + chr3R_6_31410001 chr3R_31410001 RAL-158 698 chr3R 31413097 31413115 chr3R 31418289 31418315 copia 4 5195 2.5 1.0 1.8 1.4 5218 chr3R 31413097 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418315 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-158 699 chr3R 31435369 31435560 chr3R 31435514 31435813 9 198 3.5 1.5 2.5 2.6 444 chr3R 31435369 intron Gprk2 + chr3R 31435591 intron Gprk2 + chr3R 31435813 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-158 700 chr3R 31450757 31450782 chr3R 31450936 31450959 11 175 30.0 24.5 27.2 0.4 202 chr3R 31450757 intron Gprk2 + chr3R 31450858 intron Gprk2 + chr3R 31450959 intron Gprk2 + chr3R_11_31450001 chr3R_31450001 RAL-158 701 chr3R 31691560 31691564 chr3R 31696297 31696309 Doc 5 4745 0.5 7.5 4.0 1.0 4749 chr3R 31691560 intergenic not near genes chr3R 31693934 intergenic not near genes chr3R 31696309 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-158 702 chr4 671607 671632 chr4 680190 680200 Tirant 9 8579 1.5 4.0 2.8 2.4 8593 chr4 671607 intron CG11360 + chr4 675904 intron CG11360 + chr4 680200 intron CG11360 + chr4_9_675001 chr4_675001 RAL-158 703 chrX 342182 342206 chrX 342271 342274 9 83 1.5 0.5 1.0 4.5 92 chrX 342182 intron,intron CG3777 +,CG32816 - chrX 342228 intron,intron CG3777 +,CG32816 - chrX 342274 intron,intron CG3777 +,CG32816 - chrX_9_340001 chrX_340001 RAL-158 704 chrX 386531 386543 chrX 386621 386635 4 94 0.5 1.5 1.0 2.0 104 chrX 386531 intron CG32816 - chrX 386583 intron CG32816 - chrX 386635 intron CG32816 - chrX_4_385001 chrX_385001 RAL-158 705 chrX 670279 670293 chrX 670357 670372 7 79 0.0 1.5 0.8 3.9 93 chrX 670279 intergenic not near genes chrX 670326 intergenic not near genes chrX 670372 intergenic not near genes chrX_7_670001 chrX_670001 RAL-158 706 chrX 680849 680870 chrX 680921 680952 7 77 2.0 1.0 1.5 2.8 103 chrX 680849 intergenic not near genes chrX 680900 intergenic not near genes chrX 680952 intergenic not near genes chrX_7_680001 chrX_680001 RAL-158 707 chrX 706804 706829 chrX 707168 707193 7 360 0.0 4.5 2.2 2.2 389 chrX 706804 intron sdk + chrX 706998 intron sdk + chrX 707193 intron sdk + chrX_7_705001 chrX_705001 RAL-158 708 chrX 906701 906734 chrX 908490 908492 S-element 9 1782 2.5 1.0 1.8 3.2 1791 chrX 906701 intron CG43867 - chrX 907596 intron CG43867 - chrX 908492 intron CG43867 - chrX_9_905001 chrX_905001 RAL-158 709 chrX 1051069 1051089 chrX 1051147 1051167 4 76 3.5 3.5 3.5 0.9 98 chrX 1051069 intron CR44779 + chrX 1051118 intron CR44779 + chrX 1051167 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-158 710 chrX 1053117 1053119 chrX 16983076 16983077 7 15929958 12.0 1.5 6.8 0.9 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_7_9015001 chrX_9015001 RAL-158 711 chrX 1357776 1357812 chrX 1367946 1367968 Doc 4 10165 0.0 1.0 0.5 2.7 10192 chrX 1357776 intergenic png - chrX 1362872 intergenic not near genes chrX 1367968 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-158 712 chrX 1429618 1429644 chrX 1429695 1429722 5 73 3.0 2.0 2.5 1.4 104 chrX 1429618 intron futsch + chrX 1429670 intron futsch + chrX 1429722 intron futsch + chrX_5_1425001 chrX_1425001 RAL-158 713 chrX 1518038 1518074 chrX 1523440 1523476 jockey 8 5399 0.5 2.5 1.5 3.2 5438 chrX 1518038 intergenic inc + chrX 1520757 intergenic not near genes chrX 1523476 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-158 714 chrX 1627980 1627984 chrX 1635448 1635452 gtwin 4 7467 4.0 4.0 4.0 0.8 7472 chrX 1627980 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635452 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-158 715 chrX 1627987 1628003 chrX 1635444 1635453 gtwin 6 7460 1.5 3.5 2.5 1.7 7466 chrX 1627987 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635453 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-158 716 chrX 2349242 2349250 chrX 2349319 2349339 5 85 1.0 4.5 2.8 1.3 97 chrX 2349242 exon ptr - chrX 2349290 intron ptr - chrX 2349339 intron ptr - chrX_5_2345001 chrX_2345001 RAL-158 717 chrX 2399841 2399871 chrX 2408193 2408198 roo 5 8342 3.5 4.5 4.0 1.0 8357 chrX 2399841 intergenic not near genes chrX 2404020 intergenic not near genes chrX 2408198 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-158 718 chrX 2888120 2888147 chrX 2888191 2888210 9 69 1.0 3.5 2.2 2.8 90 chrX 2888120 intron kirre + chrX 2888165 intron kirre + chrX 2888210 intron kirre + chrX_9_2885001 chrX_2885001 RAL-158 719 chrX 3203472 3203494 chrX 3203665 3203677 4 192 2.0 2.5 2.2 1.2 205 chrX 3203472 intron dnc + chrX 3203574 intron dnc + chrX 3203677 intron dnc + chrX_4_3200001 chrX_3200001 RAL-158 720 chrX 3278155 3278171 chrX 3278235 3278252 4 80 8.5 5.5 7.0 0.5 97 chrX 3278155 intron dnc + chrX 3278204 intron dnc + chrX 3278252 intron dnc + chrX_4_3275001 chrX_3275001 RAL-158 721 chrX 3408998 3409014 chrX 3409075 3409076 5 74 0.5 1.5 1.0 2.5 78 chrX 3408998 intron,intron CR44999 +,CG12535 - chrX 3409037 intron,intron CR44999 +,CG12535 - chrX 3409076 intron,intron CR44999 +,CG12535 - chrX_5_3405001 chrX_3405001 RAL-158 722 chrX 3493089 3493119 chrX 3502248 3502261 roo 4 9153 1.0 0.0 0.5 2.7 9172 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497675 intron,intron CR44999 +,Gas8 - chrX 3502261 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-158 723 chrX 3597570 3597581 chrX 3619720 3619748 roo 5 22160 0.5 2.5 1.5 2.0 22178 chrX 3597570 intron AstA-R1 + chrX 3608659 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-158 724 chrX 3657426 3657445 chrX 3657496 3657509 4 68 2.5 5.0 3.8 0.8 83 chrX 3657426 intron AstA-R1 + chrX 3657468 intron AstA-R1 + chrX 3657509 intron AstA-R1 + chrX_4_3655001 chrX_3655001 RAL-158 725 chrX 3986871 3986893 chrX 3994497 3994526 412 5 7631 1.0 2.0 1.5 2.0 7655 chrX 3986871 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994526 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-158 726 chrX 4029528 4029556 chrX 4029718 4029735 4 186 1.0 0.0 0.5 2.7 207 chrX 4029528 intergenic not near genes chrX 4029632 intergenic not near genes chrX 4029735 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-158 727 chrX 4067987 4067988 chrX 10754861 10754861 5 6686874 8.5 10.5 9.5 0.5 6686874 chrX 4067987 intergenic not near genes chrX 7411424 3` UTR CG42246 - chrX 10754861 intron Rph - chrX_5_7410001 chrX_7410001 RAL-158 728 chrX 4396977 4397009 chrX 4397060 4397083 6 83 0.5 0.5 0.5 4.0 106 chrX 4396977 intron CR32773 - chrX 4397030 intron CR32773 - chrX 4397083 intron CR32773 - chrX_6_4395001 chrX_4395001 RAL-158 729 chrX 4731821 4731844 chrX 4736911 4736921 jockey 4 5088 5.0 1.0 3.0 1.0 5100 chrX 4731821 intergenic not near genes chrX 4734371 intergenic not near genes chrX 4736921 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-158 730 chrX 4763267 4763283 chrX 4763736 4763758 Stalker4 5 477 1.5 1.0 1.2 2.3 491 chrX 4763267 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763758 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-158 731 chrX 4827994 4828001 chrX 4835337 4835351 Stalker4 4 7350 3.5 2.0 2.8 1.1 7357 chrX 4827994 intergenic not near genes chrX 4831672 intergenic not near genes chrX 4835351 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-158 732 chrX 5212753 5212759 chrX 5212821 5212834 5 71 0.5 2.0 1.2 2.3 81 chrX 5212753 intron,intron CG15465 +,rg + chrX 5212794 intron,intron CG15465 +,rg + chrX 5212834 intron,intron CG15465 +,rg + chrX_5_5210001 chrX_5210001 RAL-158 733 chrX 5220396 5220416 chrX 5220637 5220641 4 237 0.0 3.0 1.5 1.6 245 chrX 5220396 intron,intron CG15465 +,rg + chrX 5220518 intron,intron CG15465 +,rg + chrX 5220641 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-158 734 chrX 5883824 5883841 chrX 5884065 5884079 pogo 4 236 0.5 1.0 0.8 2.2 255 chrX 5883824 intron CR45668 - chrX 5883952 intron CR45668 - chrX 5884079 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-158 735 chrX 5884163 5884186 chrX 5884404 5884427 pogo 6 238 1.5 0.5 1.0 3.0 264 chrX 5884163 intron CR45668 - chrX 5884295 intron CR45668 - chrX 5884427 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-158 736 chrX 5922412 5922438 chrX 5922491 5922517 6 79 0.5 2.0 1.2 2.7 105 chrX 5922412 intron CG3726 + chrX 5922464 intron CG3726 + chrX 5922517 intron CG3726 + chrX_6_5920001 chrX_5920001 RAL-158 737 chrX 6118715 6118720 chrX 6118797 6118802 4 82 0.5 4.0 2.2 1.2 87 chrX 6118715 intron Ca-alpha1T - chrX 6118758 intron Ca-alpha1T - chrX 6118802 intron Ca-alpha1T - chrX_4_6115001 chrX_6115001 RAL-158 738 chrX 6392868 6392892 chrX 6397633 6397643 Doc 4 4762 5.5 0.0 2.8 1.1 4775 chrX 6392868 intergenic not near genes chrX 6395256 intergenic not near genes chrX 6397643 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-158 739 chrX 6562817 6562851 chrX 6571298 6571312 Tirant 16 8474 2.0 2.0 2.0 5.3 8495 chrX 6562817 intron CG34417 + chrX 6567064 intron CG34417 + chrX 6571312 intron CG34417 + chrX_16_6565001 chrX_6565001 RAL-158 740 chrX 6605493 6605504 chrX 6608502 6608515 Burdock 5 3012 0.5 1.0 0.8 2.8 3022 chrX 6605493 intron pigs + chrX 6607004 intron pigs + chrX 6608515 intron pigs + chrX_5_6605001 chrX_6605001 RAL-158 741 chrX 6737522 6737549 chrX 6737603 6737630 9 79 1.0 2.0 1.5 3.6 108 chrX 6737522 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737630 intron CG3168 - chrX_9_6735001 chrX_6735001 RAL-158 742 chrX 7915228 7915254 chrX 7918618 7918644 9 3394 32.5 16.0 24.2 0.4 3416 chrX 7915228 exon snz + chrX 7916936 intron snz + chrX 7918644 exon hdm - chrX_9_7915001 chrX_7915001 RAL-158 743 chrX 9575807 9575816 chrX 9576119 9576139 mdg3 5 320 4.0 4.0 4.0 1.0 332 chrX 9575807 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576139 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-158 744 chrX 9577209 9577236 chrX 9577917 9577944 4 706 2.5 0.5 1.5 1.6 735 chrX 9577209 intron CG32699 - chrX 9577576 intron CG32699 - chrX 9577944 intron CG32699 - chrX_4_9575001 chrX_9575001 RAL-158 745 chrX 9599176 9599202 chrX 9599254 9599280 6 73 4.0 3.0 3.5 1.3 104 chrX 9599176 intergenic not near genes chrX 9599228 intergenic not near genes chrX 9599280 intergenic not near genes chrX_6_9595001 chrX_9595001 RAL-158 746 chrX 9636456 9636489 chrX 9636620 9636652 5 159 1.0 1.0 1.0 2.5 196 chrX 9636456 intron l(1)G0232 - chrX 9636554 intron l(1)G0232 - chrX 9636652 intron l(1)G0232 - chrX_5_9635001 chrX_9635001 RAL-158 747 chrX 9791861 9791891 chrX 9791958 9791988 4 95 1.0 1.0 1.0 2.0 127 chrX 9791861 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9791988 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-158 748 chrX 10550853 10550882 chrX 10552320 10552349 hobo 7 1459 4.0 1.0 2.5 2.0 1496 chrX 10550853 intron spri - chrX 10551601 intron spri - chrX 10552349 intron spri - chrX_7_10550001 chrX_10550001 RAL-158 749 chrX 12038086 12038110 chrX 12038280 12038303 5 193 6.5 4.5 5.5 0.8 217 chrX 12038086 intergenic not near genes chrX 12038194 intergenic not near genes chrX 12038303 intergenic not near genes chrX_5_12035001 chrX_12035001 RAL-158 750 chrX 12094033 12094066 chrX 12094125 12094158 7 90 2.0 1.0 1.5 2.8 125 chrX 12094033 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_7_12090001 chrX_12090001 RAL-158 751 chrX 12176738 12176764 chrX 12176813 12176839 4 76 1.5 1.0 1.2 1.8 101 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176839 intron,3` UTR Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-158 752 chrX 13374840 13374867 chrX 13374920 13374947 4 79 0.5 0.5 0.5 2.7 107 chrX 13374840 intron CG1640 + chrX 13374894 intron CG1640 + chrX 13374947 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-158 753 chrX 13429475 13429492 chrX 13430611 13430640 jockey 4 1142 0.0 1.0 0.5 2.7 1165 chrX 13429475 intergenic not near genes chrX 13430058 intergenic not near genes chrX 13430640 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-158 754 chrX 14105044 14105054 chrX 14114171 14114204 roo 4 9144 6.5 3.5 5.0 0.7 9160 chrX 14105044 intergenic not near genes chrX 14109624 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-158 755 chrX 14131491 14131524 chrX 14131571 14131603 7 76 3.0 3.5 3.2 1.7 112 chrX 14131491 intergenic not near genes chrX 14131547 intergenic not near genes chrX 14131603 intergenic not near genes chrX_7_14130001 chrX_14130001 RAL-158 756 chrX 14636460 14636492 chrX 14641901 14641933 I-element 5 5436 0.5 2.0 1.2 2.3 5473 chrX 14636460 intron NetA - chrX 14639196 intron NetA - chrX 14641933 intron NetA - chrX_5_14635001 chrX_14635001 RAL-158 757 chrX 14818785 14818797 chrX 14823971 14823998 copia 4 5198 1.5 2.0 1.8 1.4 5213 chrX 14818785 intron rut - chrX 14821392 intron rut - chrX 14823998 intron rut - chrX_4_14820001 chrX_14820001 RAL-158 758 chrX 14825362 14825375 chrX 14825437 14825446 5 73 2.5 2.5 2.5 1.4 84 chrX 14825362 intron rut - chrX 14825404 intron rut - chrX 14825446 intron rut - chrX_5_14825001 chrX_14825001 RAL-158 759 chrX 15264791 15264803 chrX 15264873 15264883 4 81 4.5 4.0 4.2 0.8 92 chrX 15264791 intergenic not near genes chrX 15264837 intergenic not near genes chrX 15264883 intergenic not near genes chrX_4_15260001 chrX_15260001 RAL-158 760 chrX 15264804 15264817 chrX 15264870 15264877 7 71 2.0 4.0 3.0 1.8 73 chrX 15264804 intergenic not near genes chrX 15264840 intergenic not near genes chrX 15264877 intergenic not near genes chrX_7_15260001 chrX_15260001 RAL-158 761 chrX 15666213 15666228 chrX 15666290 15666305 5 77 3.5 4.5 4.0 1.0 92 chrX 15666213 intergenic not near genes chrX 15666259 intergenic not near genes chrX 15666305 intergenic not near genes chrX_5_15665001 chrX_15665001 RAL-158 762 chrX 15678035 15678064 chrX 15678112 15678141 6 74 1.0 1.5 1.2 2.7 106 chrX 15678035 intergenic CG12708 + chrX 15678088 intergenic CG12708 + chrX 15678141 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-158 763 chrX 15681394 15681424 chrX 15681476 15681506 6 78 1.0 2.5 1.8 2.1 112 chrX 15681394 intergenic not near genes chrX 15681450 intergenic not near genes chrX 15681506 intergenic not near genes chrX_6_15680001 chrX_15680001 RAL-158 764 chrX 17010971 17011004 chrX 17011056 17011077 5 84 2.0 0.0 1.0 2.5 106 chrX 17010971 intron CG45002 - chrX 17011024 intron CG45002 - chrX 17011077 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-158 765 chrX 17352597 17352622 chrX 17352691 17352705 5 93 0.0 0.5 0.2 4.2 108 chrX 17352597 intergenic not near genes chrX 17352651 intergenic not near genes chrX 17352705 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-158 766 chrX 18042453 18042472 chrX 18042680 18042699 5 226 0.5 1.0 0.8 2.8 246 chrX 18042453 intron Sh - chrX 18042576 intron Sh - chrX 18042699 intron Sh - chrX_5_18040001 chrX_18040001 RAL-158 767 chrX 18447904 18447919 chrX 18448697 18448730 4 802 3.5 3.0 3.2 1.0 826 chrX 18447904 intron CG32547 - chrX 18448317 intron CG32547 - chrX 18448730 intron CG32547 - chrX_4_18445001 chrX_18445001 RAL-158 768 chrX 18453487 18453512 chrX 18453575 18453603 6 84 2.5 1.5 2.0 2.0 116 chrX 18453487 intron CG32547 - chrX 18453545 intron CG32547 - chrX 18453603 intron CG32547 - chrX_6_18450001 chrX_18450001 RAL-158 769 chrX 18540055 18540068 chrX 18541134 18541143 4 1070 12.5 10.5 11.5 0.3 1088 chrX 18540055 intron Bx + chrX 18540599 intron Bx + chrX 18541143 intron Bx + chrX_4_18540001 chrX_18540001 RAL-158 770 chrX 18555378 18555412 chrX 18556899 18556923 transib2 4 1510 1.0 1.0 1.0 2.0 1545 chrX 18555378 intron Bx + chrX 18556150 intron Bx + chrX 18556923 intron Bx + chrX_4_18555001 chrX_18555001 RAL-158 771 chrX 19014383 19014391 chrX 19014437 19014470 4 66 2.0 3.0 2.5 1.1 87 chrX 19014383 intron CG43759 + chrX 19014426 intron CG43759 + chrX 19014470 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-158 772 chrX 19729607 19729640 chrX 19729690 19729723 7 81 2.0 0.5 1.2 3.2 116 chrX 19729607 3` UTR CG12531 + chrX 19729665 3` UTR CG12531 + chrX 19729723 3` UTR CG12531 + chrX_7_19725001 chrX_19725001 RAL-158 773 chrX 19756140 19756152 chrX 19756227 19756239 4 87 0.0 1.5 0.8 2.2 99 chrX 19756140 intron Pmp70 + chrX 19756190 intron Pmp70 + chrX 19756239 intron Pmp70 + chrX_4_19755001 chrX_19755001 RAL-158 774 chrX 20065804 20065829 chrX 20065883 20065894 6 73 1.0 1.0 1.0 3.0 90 chrX 20065804 intergenic not near genes chrX 20065849 intergenic not near genes chrX 20065894 intergenic not near genes chrX_6_20065001 chrX_20065001 RAL-158 775 chrX 20940719 20940752 chrX 20942188 20942221 hobo 6 1467 2.5 3.0 2.8 1.6 1502 chrX 20940719 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942221 intergenic not near genes chrX_6_20940001 chrX_20940001 RAL-158 776 chrX 21264748 21264763 chrX 21264805 21264826 5 66 2.0 0.5 1.2 2.3 78 chrX 21264748 intron CG32521 - chrX 21264787 intron CG32521 - chrX 21264826 intron CG32521 - chrX_5_21260001 chrX_21260001 RAL-158 777 chrX 21474410 21474431 chrX 21474776 21474783 1731 5 362 2.0 3.5 2.8 1.3 373 chrX 21474410 intergenic not near genes chrX 21474596 intergenic not near genes chrX 21474783 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-158 778 chrX 21516987 21516995 chrX 21517066 21517074 4 78 3.5 1.0 2.2 1.2 87 chrX 21516987 intron CR45082 - chrX 21517030 intron CR45082 - chrX 21517074 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-158 779 chrX 21516996 21517017 chrX 21517065 21517077 6 70 1.0 1.0 1.0 3.0 81 chrX 21516996 intron CR45082 - chrX 21517036 intron CR45082 - chrX 21517077 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-158 780 chrX 22784077 22784102 chrX 22784160 22784184 4 80 0.0 0.0 0.0 4.0 107 chrX 22784077 intron CR44997 + chrX 22784130 intron CR44997 + chrX 22784184 intron CR44997 + chrX_4_22780001 chrX_22780001 RAL-158 781 chrX 22785606 22785634 chrX 22785697 22785725 6 91 2.5 1.5 2.0 2.0 119 chrX 22785606 intron CR44997 + chrX 22785666 intron CR44997 + chrX 22785725 intron CR44997 + chrX_6_22785001 chrX_22785001 RAL-158 782 chrX 22870878 22870900 chrX 22870963 22870972 6 78 1.5 2.0 1.8 2.1 94 chrX 22870878 intron,3` UTR CG42346 +,CR43656 - chrX 22870925 intron,3` UTR CG42346 +,CR43656 - chrX 22870972 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-158 783 chrY 975607 975819 chrY 975704 975873 10 90 97.5 94.0 95.8 0.1 266 chrY 975607 intergenic not near genes chrY 975740 intergenic not near genes chrY 975873 intergenic not near genes chrY_10_975001 chrY_975001 RAL-158