SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47463	47484	chr2L	52563	52588	jockey	6	5097	6.0	5.0	5.5	0.9	5125	chr2L	47463	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52588	intron	Cda5 -	chr2L_6_50001	chr2L_50001	RAL-149
5	chr2L	347889	347916	chr2L	355389	355403	blood	4	7496	3.5	2.5	3.0	1.0	7514	chr2L	347889	3` UTR	Plc21C +	chr2L	351646	intron	Plc21C +	chr2L	355403	3` UTR	Plc21C +	chr2L_4_350001	chr2L_350001	RAL-149
6	chr2L	686919	686948	chr2L	695959	695972	roo	6	9032	1.5	1.5	1.5	2.4	9053	chr2L	686919	intron	ds -	chr2L	691446	intron	ds -	chr2L	695972	intron	ds -	chr2L_6_690001	chr2L_690001	RAL-149
9	chr2L	976887	976910	chr2L	984522	984530	roo	4	7630	3.5	4.0	3.8	0.8	7643	chr2L	976887	intergenic	not near genes	chr2L	980708	intergenic	not near genes	chr2L	984530	intergenic	not near genes	chr2L_4_980001	chr2L_980001	RAL-149
12	chr2L	1220127	1220159	chr2L	1227593	1227623	blood	9	7458	4.0	3.0	3.5	2.0	7496	chr2L	1220127	intron	CG42329 +	chr2L	1223875	intron	CG42329 +	chr2L	1227623	intron	CG42329 +	chr2L_9_1220001	chr2L_1220001	RAL-149
25	chr2L	2100387	2100408	chr2L	2109523	2109533	roo	5	9136	4.0	4.5	4.2	1.0	9146	chr2L	2100387	intron	dpr3 -	chr2L	2104960	intron	dpr3 -	chr2L	2109533	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	RAL-149
26	chr2L	2112124	2112145	chr2L	2119778	2119785	opus	7	7655	2.5	3.5	3.0	1.8	7661	chr2L	2112124	intergenic	not near genes	chr2L	2115954	intergenic	not near genes	chr2L	2119785	intergenic	not near genes	chr2L_7_2115001	chr2L_2115001	RAL-149
34	chr2L	2661216	2661232	chr2L	2663031	2663070	I-element	6	1826	2.0	0.5	1.2	2.7	1854	chr2L	2661216	intergenic	not near genes	chr2L	2662143	intergenic	not near genes	chr2L	2663070	intergenic	not near genes	chr2L_6_2660001	chr2L_2660001	RAL-149
40	chr2L	3073039	3073061	chr2L	3078232	3078247	copia	11	5192	2.5	0.5	1.5	4.4	5208	chr2L	3073039	intron	toc -	chr2L	3075643	intron	toc -	chr2L	3078247	intron	toc -	chr2L_11_3075001	chr2L_3075001	RAL-149
41	chr2L	3202745	3202765	chr2L	3210173	3210180	mdg1	5	7426	2.0	2.0	2.0	1.7	7435	chr2L	3202745	intergenic	not near genes	chr2L	3206462	intergenic	not near genes	chr2L	3210180	intergenic	CR45336 +	chr2L_5_3205001	chr2L_3205001	RAL-149
48	chr2L	4066048	4066052	chr2L	4068865	4068877	Juan	4	2823	6.5	2.0	4.2	0.8	2829	chr2L	4066048	intron	ed +	chr2L	4067462	intron	ed +	chr2L	4068877	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-149
51	chr2L	4181292	4181302	chr2L	4183903	4183913	Burdock	4	2612	2.0	2.5	2.2	1.2	2621	chr2L	4181292	intergenic	not near genes	chr2L	4182602	intergenic	not near genes	chr2L	4183913	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-149
54	chr2L	4601704	4601737	chr2L	4609145	4609161	mdg1	9	7435	2.5	6.0	4.2	1.7	7457	chr2L	4601704	intron	dp -	chr2L	4605432	intron	dp -	chr2L	4609161	intron	dp -	chr2L_9_4605001	chr2L_4605001	RAL-149
55	chr2L	4661843	4661856	chr2L	4669423	4669436	opus	4	7580	1.5	5.0	3.2	1.0	7593	chr2L	4661843	intergenic	not near genes	chr2L	4665640	intergenic	not near genes	chr2L	4669436	intergenic	not near genes	chr2L_4_4665001	chr2L_4665001	RAL-149
66	chr2L	5827722	5827739	chr2L	5836718	5836742	roo	10	9003	5.5	6.5	6.0	1.4	9020	chr2L	5827722	intron	TrissinR +	chr2L	5832232	intron	TrissinR +	chr2L	5836742	intron	TrissinR +	chr2L_10_5830001	chr2L_5830001	RAL-149
72	chr2L	6363148	6363180	chr2L	6366070	6366086	Burdock	4	2917	1.5	1.0	1.2	1.8	2938	chr2L	6363148	intergenic	not near genes	chr2L	6364617	intergenic	not near genes	chr2L	6366086	intergenic	not near genes	chr2L_4_6360001	chr2L_6360001	RAL-149
73	chr2L	6426858	6426889	chr2L	6445118	6445133	roo	10	18253	4.0	4.5	4.2	1.9	18275	chr2L	6426858	3` UTR	CG9527 -	chr2L	6435996	intron	CG9527 -	chr2L	6445133	exon	CG9527 -	chr2L_10_6435001	chr2L_6435001	RAL-149
79	chr2L	6876779	6876806	chr2L	6882968	6882971	diver	5	6185	5.5	5.5	5.5	0.8	6192	chr2L	6876779	intron	Nlg2 +	chr2L	6879875	intron	Nlg2 +	chr2L	6882971	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-149
83	chr2L	7343336	7343357	chr2L	7350441	7350457	roo	7	7104	3.5	5.0	4.2	1.3	7121	chr2L	7343336	intron	Wnt6 +	chr2L	7346896	intron	Wnt6 +	chr2L	7350457	intron	Wnt6 +	chr2L_7_7345001	chr2L_7345001	RAL-149
90	chr2L	7977105	7977111	chr2L	7984065	7984070	297	5	6962	2.0	3.0	2.5	1.4	6965	chr2L	7977105	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984070	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-149
91	chr2L	8013620	8013644	chr2L	8018823	8018830	copia	4	5199	2.5	0.0	1.2	1.8	5210	chr2L	8013620	intron	Tg +	chr2L	8016225	intron	Tg +	chr2L	8018830	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-149
99	chr2L	8723114	8723141	chr2L	8731490	8731516	Tirant	8	8372	1.0	2.0	1.5	3.2	8402	chr2L	8723114	intron	raw -	chr2L	8727315	intron	raw -	chr2L	8731516	intron	raw -	chr2L_8_8725001	chr2L_8725001	RAL-149
101	chr2L	9000279	9000308	chr2L	9007789	9007804	roo	9	7506	6.0	7.0	6.5	1.2	7525	chr2L	9000279	intergenic	Try29F +	chr2L	9004042	intergenic	not near genes	chr2L	9007804	intergenic	not near genes	chr2L_9_9000001	chr2L_9000001	RAL-149
111	chr2L	9393499	9393528	chr2L	9396463	9396478	jockey	7	2958	7.5	5.0	6.2	1.0	2979	chr2L	9393499	intron	Shawl -	chr2L	9394988	intron	Shawl -	chr2L	9396478	intron	Shawl -	chr2L_7_9390001	chr2L_9390001	RAL-149
118	chr2L	9973724	9973757	chr2L	9980843	9980855	HMS-Beagle	9	7112	8.0	2.5	5.2	1.5	7131	chr2L	9973724	intergenic	not near genes	chr2L	9977290	intergenic	not near genes	chr2L	9980855	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	RAL-149
122	chr2L	10156341	10156355	chr2L	10163790	10163809	blood	10	7456	3.5	3.0	3.2	2.4	7468	chr2L	10156341	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160075	intron	CG44153 -	chr2L	10163809	intron	CG44153 -	chr2L_10_10160001	chr2L_10160001	RAL-149
131	chr2L	10862863	10862875	chr2L	10864452	10864484	Rt1c	6	1602	5.5	2.0	3.8	1.2	1621	chr2L	10862863	3` UTR	CR43807 -	chr2L	10863674	intron	CR43807 -	chr2L	10864484	3` UTR	CR43807 -	chr2L_6_10860001	chr2L_10860001	RAL-149
134	chr2L	10946964	10946977	chr2L	10956166	10956170	roo	7	9207	3.0	7.0	5.0	1.2	9206	chr2L	10946964	intron	dpr2 -	chr2L	10951567	intron	dpr2 -	chr2L	10956170	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	RAL-149
143	chr2L	11563645	11563663	chr2L	11568845	11568853	copia	5	5198	2.0	2.0	2.0	1.7	5208	chr2L	11563645	intergenic	not near genes	chr2L	11566249	intergenic	not near genes	chr2L	11568853	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-149
145	chr2L	11713532	11713540	chr2L	11720982	11721008	blood	5	7461	2.0	6.0	4.0	1.0	7476	chr2L	11713532	intergenic	not near genes	chr2L	11717270	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_5_11715001	chr2L_11715001	RAL-149
153	chr2L	12558321	12558353	chr2L	12565449	12565482	HMS-Beagle	9	7124	1.0	1.5	1.2	4.1	7161	chr2L	12558321	intergenic	not near genes	chr2L	12561902	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_9_12560001	chr2L_12560001	RAL-149
155	chr2L	12731057	12731088	chr2L	12735824	12735855	F-element	12	4762	2.5	2.5	2.5	3.4	4798	chr2L	12731057	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735855	intron	MRP +	chr2L_12_12730001	chr2L_12730001	RAL-149
156	chr2L	12739173	12739207	chr2L	12743949	12743967	Doc	9	4774	1.5	2.0	1.8	3.2	4794	chr2L	12739173	exon	MRP +	chr2L	12741570	intron	MRP +	chr2L	12743967	intron	MRP +	chr2L_9_12740001	chr2L_12740001	RAL-149
158	chr2L	12861697	12861729	chr2L	12863164	12863179	hobo	9	1458	4.5	5.5	5.0	1.5	1482	chr2L	12861697	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863179	intergenic	not near genes	chr2L_9_12860001	chr2L_12860001	RAL-149
159	chr2L	12933866	12933883	chr2L	12941317	12941350	blood	8	7459	3.0	1.5	2.2	2.5	7484	chr2L	12933866	intergenic	not near genes	chr2L	12937608	intergenic	not near genes	chr2L	12941350	intergenic	not near genes	chr2L_8_12935001	chr2L_12935001	RAL-149
161	chr2L	13241966	13241983	chr2L	13244342	13244349	BS	4	2374	2.5	0.5	1.5	1.6	2383	chr2L	13241966	5` UTR	CR45330 +	chr2L	13243158	intron	CR45330 +	chr2L	13244349	5` UTR	CR45330 +	chr2L_4_13240001	chr2L_13240001	RAL-149
162	chr2L	13405655	13405683	chr2L	13410448	13410480	Doc	12	4790	2.5	4.5	3.5	2.7	4825	chr2L	13405655	exon	CG7110 +	chr2L	13408068	intron	CG7110 +	chr2L	13410480	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	RAL-149
163	chr2L	13481472	13481477	chr2L	13482059	13482075	jockey	6	599	4.0	8.0	6.0	0.9	603	chr2L	13481472	intron	CG42784 +	chr2L	13481774	intron	CG42784 +	chr2L	13482075	intron	CG42784 +	chr2L_6_13480001	chr2L_13480001	RAL-149
171	chr2L	14803898	14803908	chr2L	14809088	14809111	copia	8	5198	3.0	5.0	4.0	1.6	5213	chr2L	14803898	intergenic	not near genes	chr2L	14806504	intergenic	not near genes	chr2L	14809111	intergenic	not near genes	chr2L_8_14805001	chr2L_14805001	RAL-149
173	chr2L	14889955	14889988	chr2L	14890380	14890404	jockey	7	418	3.0	5.0	4.0	1.4	449	chr2L	14889955	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890404	intergenic	not near genes	chr2L_7_14890001	chr2L_14890001	RAL-149
178	chr2L	15446060	15446072	chr2L	15453525	15453541	blood	4	7465	1.5	2.5	2.0	1.3	7481	chr2L	15446060	intergenic	not near genes	chr2L	15449800	intergenic	not near genes	chr2L	15453541	intergenic	not near genes	chr2L_4_15445001	chr2L_15445001	RAL-149
181	chr2L	15586409	15586442	chr2L	15593461	15593483	297	7	7046	1.5	3.5	2.5	2.0	7074	chr2L	15586409	intergenic	not near genes	chr2L	15589946	intergenic	not near genes	chr2L	15593483	intergenic	not near genes	chr2L_7_15585001	chr2L_15585001	RAL-149
198	chr2L	17167571	17167596	chr2L	17167808	17167837	pogo	4	234	2.5	4.0	3.2	1.0	266	chr2L	17167571	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167704	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167837	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	RAL-149
200	chr2L	17273193	17273230	chr2L	17277973	17278002	F-element	10	4773	3.0	4.0	3.5	2.2	4809	chr2L	17273193	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278002	intergenic	not near genes	chr2L_10_17275001	chr2L_17275001	RAL-149
203	chr2L	17727759	17727788	chr2L	17729447	17729467	hobo	9	1685	1.5	0.5	1.0	4.5	1708	chr2L	17727759	intron	CadN -	chr2L	17728613	intron	CadN -	chr2L	17729467	intron	CadN -	chr2L_9_17725001	chr2L_17725001	RAL-149
207	chr2L	17911962	17911990	chr2L	17914139	17914148	pogo	8	2168	2.5	1.5	2.0	2.7	2186	chr2L	17911962	intergenic	not near genes	chr2L	17913055	intergenic	not near genes	chr2L	17914148	intergenic	CG43271 -	chr2L_8_17910001	chr2L_17910001	RAL-149
209	chr2L	18051878	18051907	chr2L	18061022	18061050	roo	6	9142	4.5	3.5	4.0	1.2	9172	chr2L	18051878	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061050	intron	rdo +	chr2L_6_18055001	chr2L_18055001	RAL-149
211	chr2L	18408027	18408057	chr2L	18412810	18412821	Doc	6	4773	5.0	3.0	4.0	1.2	4794	chr2L	18408027	intergenic	not near genes	chr2L	18410424	intergenic	not near genes	chr2L	18412821	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	RAL-149
221	chr2L	19345028	19345046	chr2L	19357218	19357252	blood	7	12199	6.0	3.0	4.5	1.3	12224	chr2L	19345028	intron	dnt -	chr2L	19351140	intron	dnt -	chr2L	19357252	intron	dnt -	chr2L_7_19350001	chr2L_19350001	RAL-149
226	chr2L	19620104	19620131	chr2L	19621080	19621113	jockey	10	977	1.5	5.0	3.2	2.4	1009	chr2L	19620104	intron	Lar +	chr2L	19620608	intron	Lar +	chr2L	19621113	intron	Lar +	chr2L_10_19620001	chr2L_19620001	RAL-149
229	chr2L	19703547	19703568	chr2L	19712675	19712685	roo	6	9130	6.5	4.0	5.2	1.0	9138	chr2L	19703547	intron	Lar +	chr2L	19708116	intron	Lar +	chr2L	19712685	intron	Lar +	chr2L_6_19705001	chr2L_19705001	RAL-149
235	chr2L	20005881	20005903	chr2L	20010949	20010974	flea	5	5072	1.5	0.0	0.8	2.8	5093	chr2L	20005881	intron	CG43861 -	chr2L	20008428	intron	CG43861 -	chr2L	20010974	intron	CG43861 -	chr2L_5_20005001	chr2L_20005001	RAL-149
236	chr2L	20272121	20272145	chr2L	20282821	20282851	copia	8	10704	1.0	3.0	2.0	2.7	10730	chr2L	20272121	intergenic	not near genes	chr2L	20277486	intergenic	not near genes	chr2L	20282851	intergenic	not near genes	chr2L_8_20275001	chr2L_20275001	RAL-149
240	chr2L	20576220	20576247	chr2L	20583688	20583712	blood	9	7465	5.0	2.5	3.8	1.9	7492	chr2L	20576220	intergenic	CR45347 +	chr2L	20579966	intergenic	not near genes	chr2L	20583712	3` UTR	CR44909 -	chr2L_9_20575001	chr2L_20575001	RAL-149
248	chr2L	20976658	20976679	chr2L	20981459	20981489	X-element	5	4807	1.5	2.0	1.8	1.8	4831	chr2L	20976658	intron	CG42238 -	chr2L	20979074	intron	CG42238 -	chr2L	20981489	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	RAL-149
250	chr2L	21020276	21020293	chr2L	21023952	21023954	NOF	4	3672	3.0	3.5	3.2	1.0	3678	chr2L	21020276	intron	CG42238 -	chr2L	21022115	intron	CG42238 -	chr2L	21023954	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-149
251	chr2L	21020297	21020308	chr2L	21023949	21023984	NOF	5	3668	1.5	2.5	2.0	1.7	3687	chr2L	21020297	intron	CG42238 -	chr2L	21022140	intron	CG42238 -	chr2L	21023984	intron	CG42238 -	chr2L_5_21020001	chr2L_21020001	RAL-149
257	chr2L	21981687	21981707	chr2L	21990844	21990864	roo	8	9160	2.5	2.0	2.2	2.5	9177	chr2L	21981687	exon	CG2528 -	chr2L	21986276	intron	CG2528 -	chr2L	21990864	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-149
264	chr2L	22548928	22548945	chr2L	22550136	22550159	1360	5	1214	0.5	3.0	1.8	1.8	1231	chr2L	22548928	intergenic	CG17490 +	chr2L	22549544	intergenic	not near genes	chr2L	22550159	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	RAL-149
266	chr2L	22679806	22679831	chr2L	22684564	22684596	F-element	9	4767	3.0	4.0	3.5	2.0	4790	chr2L	22679806	intron	CG40006 -	chr2L	22682201	intron	CG40006 -	chr2L	22684596	intron	CG40006 -	chr2L_9_22680001	chr2L_22680001	RAL-149
268	chr2R	529341	529354	chr2R	537949	537973	Max-element	4	8609	1.5	2.0	1.8	1.4	8632	chr2R	529341	intron	CG40378 +	chr2R	533657	intron	CG40378 +	chr2R	537973	intron	CG40378 +	chr2R_4_530001	chr2R_530001	RAL-149
269	chr2R	552777	552787	chr2R	553970	553989	1360	5	1199	0.5	2.0	1.2	2.3	1212	chr2R	552777	intron	CG40378 +	chr2R	553383	intron	CG40378 +	chr2R	553989	intron	CG40378 +	chr2R_5_550001	chr2R_550001	RAL-149
270	chr2R	1082369	1082378	chr2R	1087129	1087132	Doc	4	4762	4.5	6.5	5.5	0.6	4763	chr2R	1082369	intron	rl +	chr2R	1084750	intron	rl +	chr2R	1087132	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-149
273	chr2R	2591544	2591564	chr2R	2594212	2594234	roo	5	2669	24.0	15.0	19.5	0.2	2690	chr2R	2591544	intergenic	not near genes	chr2R	2592889	intergenic	not near genes	chr2R	2594234	intergenic	not near genes	chr2R_5_2590001	chr2R_2590001	RAL-149
279	chr2R	4622956	4622988	chr2R	4624115	4624143	1360	8	1158	4.0	3.5	3.8	1.7	1187	chr2R	4622956	intergenic	CR44101 -	chr2R	4623550	intergenic	not near genes	chr2R	4624143	intergenic	not near genes	chr2R_8_4620001	chr2R_4620001	RAL-149
293	chr2R	5869275	5869309	chr2R	5874350	5874384	flea	7	5070	2.5	4.0	3.2	1.7	5109	chr2R	5869275	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874384	intergenic	not near genes	chr2R_7_5870001	chr2R_5870001	RAL-149
297	chr2R	6096715	6096742	chr2R	6101911	6101912	BS	6	5185	6.5	4.5	5.5	0.9	5197	chr2R	6096715	intron	EcR -	chr2R	6099314	intron	EcR -	chr2R	6101912	intron	EcR -	chr2R_6_6095001	chr2R_6095001	RAL-149
300	chr2R	6494542	6494555	chr2R	6499286	6499310	F-element	6	4752	1.0	1.0	1.0	3.0	4768	chr2R	6494542	intergenic	not near genes	chr2R	6496926	intergenic	not near genes	chr2R	6499310	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-149
302	chr2R	7139950	7139953	chr2R	7141419	7141442	hopper2	4	1479	4.0	4.5	4.2	0.8	1492	chr2R	7139950	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141442	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-149
303	chr2R	7209857	7209870	chr2R	7217588	7217608	roo	5	7741	0.5	3.0	1.8	1.8	7751	chr2R	7209857	intron	pk +	chr2R	7213732	intron	pk +	chr2R	7217608	intron	pk +	chr2R_5_7210001	chr2R_7210001	RAL-149
307	chr2R	7608414	7608438	chr2R	7613617	7613635	I-element	8	5201	1.5	0.5	1.0	4.0	5221	chr2R	7608414	intron	CG1358 -	chr2R	7611024	intron	CG1358 -	chr2R	7613635	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	RAL-149
308	chr2R	7815670	7815696	chr2R	7822139	7822165	Burdock	8	6463	0.0	2.5	1.2	3.6	6495	chr2R	7815670	intergenic	CG1882 +	chr2R	7818918	intergenic	not near genes	chr2R	7822165	3` UTR	cathD -	chr2R_8_7815001	chr2R_7815001	RAL-149
309	chr2R	7869192	7869215	chr2R	7873972	7874001	Doc	4	4781	4.5	4.0	4.2	0.8	4809	chr2R	7869192	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874001	intron	Dgk -	chr2R_4_7870001	chr2R_7870001	RAL-149
316	chr2R	8398230	8398243	chr2R	8402987	8403002	Doc	7	4774	2.5	4.0	3.2	1.7	4772	chr2R	8398230	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403002	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-149
320	chr2R	8722763	8722788	chr2R	8723003	8723009	pogo	10	236	5.5	5.0	5.2	1.6	246	chr2R	8722763	intron	CG14767 -	chr2R	8722886	intron	CG14767 -	chr2R	8723009	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	RAL-149
328	chr2R	9151318	9151333	chr2R	9157778	9157784	Burdock	6	6460	3.0	4.0	3.5	1.3	6466	chr2R	9151318	3` UTR	CG30345 +	chr2R	9154551	intergenic	not near genes	chr2R	9157784	intergenic	CG8008 -	chr2R_6_9150001	chr2R_9150001	RAL-149
330	chr2R	9212702	9212722	chr2R	9213180	9213201	roo	4	479	6.0	4.5	5.2	0.6	499	chr2R	9212702	intergenic	CR45309 +	chr2R	9212952	intergenic	CR45309 +	chr2R	9213201	5` UTR	CR45309 +	chr2R_4_9210001	chr2R_9210001	RAL-149
336	chr2R	9726624	9726645	chr2R	9734163	9734181	17.6	4	7540	2.5	0.5	1.5	1.6	7557	chr2R	9726624	intron	sqa -	chr2R	9730402	intron	sqa -	chr2R	9734181	intron	sqa -	chr2R_4_9730001	chr2R_9730001	RAL-149
339	chr2R	9945432	9945460	chr2R	9945627	9945649	BS	7	193	5.5	2.5	4.0	1.4	217	chr2R	9945432	intron	Mef2 -	chr2R	9945540	intron	Mef2 -	chr2R	9945649	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	RAL-149
342	chr2R	10005867	10005884	chr2R	10007013	10007031	1360	7	1152	1.5	4.0	2.8	1.8	1164	chr2R	10005867	intron	Pka-R2 -	chr2R	10006449	intron	Pka-R2 -	chr2R	10007031	intron	Pka-R2 -	chr2R_7_10005001	chr2R_10005001	RAL-149
349	chr2R	10585575	10585589	chr2R	10594151	10594161	Tirant	4	8574	5.5	1.5	3.5	0.9	8586	chr2R	10585575	intron	psq +	chr2R	10589868	intron	psq +	chr2R	10594161	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-149
350	chr2R	10622350	10622379	chr2R	10637115	10637144	mdg1	5	14761	2.5	0.0	1.2	2.3	14794	chr2R	10622350	intron	CG11883 +	chr2R	10629747	intron	CG11883 +	chr2R	10637144	intron	CG11883 +	chr2R_5_10625001	chr2R_10625001	RAL-149
355	chr2R	10948025	10948062	chr2R	10955575	10955606	17.6	6	7540	1.5	4.5	3.0	1.5	7581	chr2R	10948025	intergenic	not near genes	chr2R	10951816	intergenic	not near genes	chr2R	10955606	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-149
356	chr2R	11009819	11009841	chr2R	11018987	11018991	roo	8	9166	1.5	5.5	3.5	1.8	9172	chr2R	11009819	intron	luna -	chr2R	11014405	intron	luna -	chr2R	11018991	intron	luna -	chr2R_8_11010001	chr2R_11010001	RAL-149
358	chr2R	11207826	11207846	chr2R	11208019	11208021	BS	5	188	4.5	2.5	3.5	1.1	195	chr2R	11207826	intron	shn +	chr2R	11207924	intron	shn +	chr2R	11208021	intron	shn +	chr2R_5_11205001	chr2R_11205001	RAL-149
359	chr2R	11415535	11415550	chr2R	11418668	11418682	opus	8	3140	1.0	5.0	3.0	2.0	3147	chr2R	11415535	intron	Drip -	chr2R	11417108	intron	Drip -	chr2R	11418682	intron	Drip -	chr2R_8_11415001	chr2R_11415001	RAL-149
360	chr2R	11472666	11472676	chr2R	11473844	11473872	pogo	6	1190	3.5	1.0	2.2	1.9	1206	chr2R	11472666	intergenic	not near genes	chr2R	11473269	intergenic	not near genes	chr2R	11473872	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	RAL-149
371	chr2R	12819445	12819479	chr2R	12824514	12824535	jockey	5	5063	2.0	6.0	4.0	1.0	5090	chr2R	12819445	intergenic	not near genes	chr2R	12821990	intergenic	not near genes	chr2R	12824535	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-149
374	chr2R	13136835	13136858	chr2R	13141633	13141636	Doc	8	4793	5.5	3.5	4.5	1.5	4801	chr2R	13136835	exon	Cap-G +	chr2R	13139236	intron	Cap-G +	chr2R	13141636	intron	Cap-G +	chr2R_8_13135001	chr2R_13135001	RAL-149
377	chr2R	13580502	13580531	chr2R	13580847	13580880	jockey	4	343	0.0	3.0	1.5	1.6	378	chr2R	13580502	3` UTR	CG6191 -	chr2R	13580691	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580880	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-149
384	chr2R	14394235	14394250	chr2R	14399024	14399037	Doc	5	4786	4.0	4.0	4.0	1.0	4802	chr2R	14394235	intergenic	not near genes	chr2R	14396636	intergenic	not near genes	chr2R	14399037	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-149
385	chr2R	14467320	14467325	chr2R	14476464	14476478	roo	4	9148	2.5	2.5	2.5	1.1	9158	chr2R	14467320	intergenic	not near genes	chr2R	14471899	intergenic	not near genes	chr2R	14476478	5` UTR	CR44462 +	chr2R_4_14470001	chr2R_14470001	RAL-149
386	chr2R	14497402	14497417	chr2R	14498551	14498578	1360	4	1160	2.0	0.5	1.2	1.8	1176	chr2R	14497402	3` UTR	Cpsf160 -	chr2R	14497990	intron	Cpsf160 -	chr2R	14498578	3` UTR	Cpsf160 -	chr2R_4_14495001	chr2R_14495001	RAL-149
394	chr2R	15004736	15004761	chr2R	15005058	15005070	jockey	6	324	2.5	2.5	2.5	1.7	334	chr2R	15004736	intergenic	not near genes	chr2R	15004903	intergenic	not near genes	chr2R	15005070	intergenic	not near genes	chr2R_6_15000001	chr2R_15000001	RAL-149
395	chr2R	15015461	15015489	chr2R	15022885	15022908	mdg1	12	7421	3.0	2.5	2.8	3.2	7447	chr2R	15015461	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022908	intron	hbs +	chr2R_12_15015001	chr2R_15015001	RAL-149
397	chr2R	15084990	15085006	chr2R	15092026	15092033	297	6	7037	2.0	1.0	1.5	2.4	7043	chr2R	15084990	intergenic	not near genes	chr2R	15088512	intergenic	not near genes	chr2R	15092033	5` UTR	CR44457 +	chr2R_6_15085001	chr2R_15085001	RAL-149
398	chr2R	15119333	15119347	chr2R	15127798	15127818	Tirant	7	8473	5.0	5.0	5.0	1.2	8485	chr2R	15119333	intron	chn +	chr2R	15123576	intron	chn +	chr2R	15127818	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-149
409	chr2R	17147263	17147266	chr2R	17152278	17152297	jockey	4	5025	4.5	4.5	4.5	0.7	5034	chr2R	17147263	intergenic	not near genes	chr2R	17149780	intergenic	not near genes	chr2R	17152297	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-149
410	chr2R	17236512	17236516	chr2R	17241715	17241720	copia	4	5204	5.5	4.5	5.0	0.7	5208	chr2R	17236512	intron	mbl +	chr2R	17239116	intron	mbl +	chr2R	17241720	intron	mbl +	chr2R_4_17235001	chr2R_17235001	RAL-149
411	chr2R	17236522	17236537	chr2R	17241713	17241741	copia	6	5199	2.0	4.0	3.0	1.5	5219	chr2R	17236522	intron	mbl +	chr2R	17239132	intron	mbl +	chr2R	17241741	intron	mbl +	chr2R_6_17235001	chr2R_17235001	RAL-149
412	chr2R	17485916	17485946	chr2R	17490678	17490688	F-element	4	4757	2.5	2.5	2.5	1.1	4772	chr2R	17485916	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488302	intron	NT5E-2 +	chr2R	17490688	intron	NT5E-2 +	chr2R_4_17485001	chr2R_17485001	RAL-149
413	chr2R	17784025	17784051	chr2R	17784266	17784279	pogo	7	233	9.0	2.5	5.8	1.0	254	chr2R	17784025	intergenic	mir-31a -	chr2R	17784152	intergenic	mir-31a -	chr2R	17784279	intergenic	mir-31a -	chr2R_7_17780001	chr2R_17780001	RAL-149
422	chr2R	18358400	18358422	chr2R	18372606	18372632	roo	8	14205	2.5	0.5	1.5	3.2	14232	chr2R	18358400	intergenic	not near genes	chr2R	18365516	intergenic	not near genes	chr2R	18372632	intergenic	not near genes	chr2R_8_18365001	chr2R_18365001	RAL-149
426	chr2R	18575804	18575822	chr2R	18581992	18582007	3S18	4	6187	3.0	5.0	4.0	0.8	6203	chr2R	18575804	intron	GEFmeso -	chr2R	18578906	intron	GEFmeso -	chr2R	18582007	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-149
427	chr2R	18590883	18590901	chr2R	18600017	18600040	roo	8	9138	2.0	5.0	3.5	1.8	9157	chr2R	18590883	intron	GEFmeso -	chr2R	18595462	intron	GEFmeso -	chr2R	18600040	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	RAL-149
440	chr2R	19776598	19776626	chr2R	19779919	19779949	jockey	5	3320	4.5	5.5	5.0	0.8	3351	chr2R	19776598	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779949	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	RAL-149
444	chr2R	19957452	19957463	chr2R	19962636	19962643	copia	4	5189	2.0	5.5	3.8	0.8	5191	chr2R	19957452	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962643	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-149
453	chr2R	20739460	20739478	chr2R	20744208	20744231	F-element	5	4754	2.0	5.0	3.5	1.1	4771	chr2R	20739460	intron	dpr +	chr2R	20741846	intron	dpr +	chr2R	20744231	intron	dpr +	chr2R_5_20740001	chr2R_20740001	RAL-149
460	chr2R	21753089	21753116	chr2R	21753573	21753597	roo	5	480	1.5	3.0	2.2	1.6	508	chr2R	21753089	intergenic	not near genes	chr2R	21753343	intergenic	not near genes	chr2R	21753597	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-149
461	chr2R	21809524	21809558	chr2R	21817763	21817780	roo	9	8233	2.0	4.5	3.2	2.1	8256	chr2R	21809524	intergenic	not near genes	chr2R	21813652	intergenic	not near genes	chr2R	21817780	intergenic	not near genes	chr2R_9_21810001	chr2R_21810001	RAL-149
467	chr2R	22349710	22349723	chr2R	22351478	22351496	jockey	6	1772	3.0	2.5	2.8	1.6	1786	chr2R	22349710	intron	Liprin-gamma -	chr2R	22350603	intron	Liprin-gamma -	chr2R	22351496	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-149
468	chr2R	22360395	22360411	chr2R	22360810	22360830	jockey	4	416	5.0	2.5	3.8	0.8	435	chr2R	22360395	intron	Liprin-gamma -	chr2R	22360612	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-149
470	chr2R	22465322	22465337	chr2R	22465515	22465533	BS	4	192	3.5	2.0	2.8	1.1	211	chr2R	22465322	intron	CG10384 +	chr2R	22465428	intron	CG10384 +	chr2R	22465533	intron	CG10384 +	chr2R_4_22465001	chr2R_22465001	RAL-149
471	chr2R	22525766	22525786	chr2R	22529304	22529311	jockey	4	3542	3.0	4.5	3.8	0.8	3545	chr2R	22525766	intron	px -	chr2R	22527538	intron	px -	chr2R	22529311	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-149
474	chr2R	22774975	22775002	chr2R	22775378	22775405	jockey	4	407	0.5	4.0	2.2	1.2	430	chr2R	22774975	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775405	intron	CG42260 -	chr2R_4_22775001	chr2R_22775001	RAL-149
483	chr2R	23914323	23914332	chr2R	23921943	23921945	412	4	7618	2.5	4.5	3.5	0.9	7622	chr2R	23914323	exon	kcc +	chr2R	23918134	intron	kcc +	chr2R	23921945	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-149
486	chr2R	24177258	24177266	chr2R	24184726	24184733	412	4	7472	2.0	1.0	1.5	1.6	7475	chr2R	24177258	3` UTR	Nop60B +	chr2R	24180996	intron	Nop60B +	chr2R	24184733	3` UTR	Nop60B +	chr2R_4_24180001	chr2R_24180001	RAL-149
488	chr2R	24353430	24353460	chr2R	24361792	24361822	roo	6	8360	1.0	2.0	1.5	2.4	8392	chr2R	24353430	intron,intron	bs +,CR44811 -	chr2R	24357626	intron,intron	bs +,CR44811 -	chr2R	24361822	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-149
490	chr2R	24647601	24647616	chr2R	24655145	24655173	412	6	7546	6.0	3.0	4.5	1.1	7572	chr2R	24647601	intergenic	not near genes	chr2R	24651387	intergenic	not near genes	chr2R	24655173	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	RAL-149
491	chr2R	24727894	24727905	chr2R	24735390	24735403	mdg1	4	7498	3.5	2.0	2.8	1.1	7509	chr2R	24727894	intron	Mid1 -	chr2R	24731648	intron	Mid1 -	chr2R	24735403	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	RAL-149
492	chr2R	24763635	24763641	chr2R	24765587	24765602	G2	7	1956	2.5	3.5	3.0	1.8	1967	chr2R	24763635	exon	CG3894 +	chr2R	24764618	intron	CG3894 +	chr2R	24765602	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	RAL-149
504	chr3L	402694	402716	chr3L	409741	409759	297	6	7047	5.0	7.0	6.0	0.9	7065	chr3L	402694	intergenic	not near genes	chr3L	406226	intergenic	not near genes	chr3L	409759	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-149
510	chr3L	858014	858032	chr3L	866479	866490	Tirant	8	8464	3.5	3.5	3.5	1.8	8476	chr3L	858014	intergenic	not near genes	chr3L	862252	intergenic	not near genes	chr3L	866490	intergenic	CG12502 +	chr3L_8_860001	chr3L_860001	RAL-149
513	chr3L	925192	925210	chr3L	932601	932628	mdg1	8	7414	1.0	0.5	0.8	4.4	7436	chr3L	925192	intron	Glut1 +	chr3L	928910	intron	Glut1 +	chr3L	932628	intron	Glut1 +	chr3L_8_925001	chr3L_925001	RAL-149
514	chr3L	939770	939803	chr3L	940891	940907	jockey	9	1112	3.5	3.0	3.2	2.1	1137	chr3L	939770	intron	Glut1 +	chr3L	940338	intron	Glut1 +	chr3L	940907	intron	Glut1 +	chr3L_9_940001	chr3L_940001	RAL-149
518	chr3L	1154140	1154146	chr3L	1163278	1163296	roo	4	9146	2.5	1.0	1.8	1.4	9156	chr3L	1154140	intron	bab2 -	chr3L	1158718	intron	bab2 -	chr3L	1163296	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-149
520	chr3L	1219596	1219620	chr3L	1227329	1227353	412	12	7723	2.5	4.5	3.5	2.7	7757	chr3L	1219596	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227353	intron	mwh +	chr3L_12_1220001	chr3L_1220001	RAL-149
523	chr3L	1506012	1506032	chr3L	1513592	1513628	17.6	10	7585	3.5	4.5	4.0	2.0	7616	chr3L	1506012	intron,intron	Psa +,cue -	chr3L	1509820	intron,intron	Psa +,cue -	chr3L	1513628	intron,intron	Psa +,cue -	chr3L_10_1505001	chr3L_1505001	RAL-149
539	chr3L	2447510	2447534	chr3L	2456658	2456660	roo	4	9138	1.5	3.0	2.2	1.2	9150	chr3L	2447510	intron	CG45186 +	chr3L	2452085	intron	CG45186 +	chr3L	2456660	intron	CG45186 +	chr3L_4_2450001	chr3L_2450001	RAL-149
544	chr3L	2927843	2927868	chr3L	2936117	2936124	Tirant	8	8272	1.5	1.0	1.2	3.6	8281	chr3L	2927843	intron	Shab +	chr3L	2931984	intron	Shab +	chr3L	2936124	intron	Shab +	chr3L_8_2930001	chr3L_2930001	RAL-149
546	chr3L	3281451	3281475	chr3L	3281931	3281964	Doc	10	488	2.0	4.5	3.2	2.4	513	chr3L	3281451	intron	CG12017 +	chr3L	3281708	intron	CG12017 +	chr3L	3281964	intron	CG12017 +	chr3L_10_3280001	chr3L_3280001	RAL-149
548	chr3L	3475104	3475108	chr3L	3475533	3475541	jockey	4	433	0.5	5.5	3.0	1.0	437	chr3L	3475104	intron	CG42324 +	chr3L	3475322	intron	CG42324 +	chr3L	3475541	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	RAL-149
551	chr3L	3601299	3601323	chr3L	3606610	3606629	copia	12	5305	2.0	4.5	3.2	2.9	5330	chr3L	3601299	intron	Eip63E +	chr3L	3603964	intron	Eip63E +	chr3L	3606629	intron	Eip63E +	chr3L_12_3600001	chr3L_3600001	RAL-149
552	chr3L	3601325	3601332	chr3L	3606609	3606625	copia	4	5295	1.5	4.0	2.8	1.1	5300	chr3L	3601325	intron	Eip63E +	chr3L	3603975	intron	Eip63E +	chr3L	3606625	intron	Eip63E +	chr3L_4_3600001	chr3L_3600001	RAL-149
572	chr3L	5910048	5910059	chr3L	5910272	5910289	pogo	5	227	2.5	2.5	2.5	1.4	241	chr3L	5910048	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910289	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-149
573	chr3L	5926334	5926349	chr3L	5926502	5926517	BS	7	166	7.0	2.0	4.5	1.3	183	chr3L	5926334	intron	Vap-33B +	chr3L	5926426	intron	Vap-33B +	chr3L	5926517	intron	Vap-33B +	chr3L_7_5925001	chr3L_5925001	RAL-149
575	chr3L	6220933	6220945	chr3L	6230065	6230097	roo	4	9138	7.0	7.5	7.2	0.5	9164	chr3L	6220933	5` UTR	pncr008:3L +	chr3L	6225515	intergenic	not near genes	chr3L	6230097	intergenic	not near genes	chr3L_4_6225001	chr3L_6225001	RAL-149
578	chr3L	6887522	6887548	chr3L	6895008	6895032	roo	4	7487	4.0	1.5	2.8	1.1	7510	chr3L	6887522	intergenic	not near genes	chr3L	6891277	intergenic	not near genes	chr3L	6895032	intergenic	not near genes	chr3L_4_6890001	chr3L_6890001	RAL-149
586	chr3L	7377335	7377348	chr3L	7380421	7380447	297	7	3098	1.0	3.5	2.2	2.2	3112	chr3L	7377335	intron	SMSr -	chr3L	7378891	intron	SMSr -	chr3L	7380447	intron	SMSr -	chr3L_7_7375001	chr3L_7375001	RAL-149
593	chr3L	7985370	7985397	chr3L	7987689	7987709	NOF	5	2319	2.5	3.5	3.0	1.2	2339	chr3L	7985370	intron	nmo +	chr3L	7986540	intron	nmo +	chr3L	7987709	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-149
598	chr3L	8498304	8498328	chr3L	8505771	8505795	blood	4	7462	1.0	4.5	2.8	1.1	7491	chr3L	8498304	intron	CG43163 -	chr3L	8502050	intron	CG43163 -	chr3L	8505795	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-149
600	chr3L	8791272	8791292	chr3L	8796691	8796699	I-element	7	5413	4.0	0.0	2.0	2.3	5427	chr3L	8791272	exon	Fhos +	chr3L	8793986	intron	Fhos +	chr3L	8796699	intron	Fhos +	chr3L_7_8790001	chr3L_8790001	RAL-149
602	chr3L	9076931	9076953	chr3L	9084485	9084513	412	12	7557	6.5	7.0	6.8	1.5	7582	chr3L	9076931	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084513	exon	Tequila +	chr3L_12_9080001	chr3L_9080001	RAL-149
603	chr3L	9130558	9130580	chr3L	9134319	9134338	412	6	3760	5.5	2.5	4.0	1.2	3780	chr3L	9130558	intergenic	bol -	chr3L	9132448	intergenic	not near genes	chr3L	9134338	intergenic	Dhpr +	chr3L_6_9130001	chr3L_9130001	RAL-149
604	chr3L	9164709	9164716	chr3L	9166162	9166171	hobo	4	1453	2.5	1.5	2.0	1.3	1462	chr3L	9164709	intron	Rdl -	chr3L	9165440	intron	Rdl -	chr3L	9166171	intron	Rdl -	chr3L_4_9165001	chr3L_9165001	RAL-149
605	chr3L	9219241	9219271	chr3L	9219913	9219917	jockey	9	662	6.5	6.5	6.5	1.2	676	chr3L	9219241	intergenic	not near genes	chr3L	9219579	intergenic	not near genes	chr3L	9219917	intergenic	not near genes	chr3L_9_9215001	chr3L_9215001	RAL-149
607	chr3L	9443509	9443534	chr3L	9445300	9445308	S-element	4	1784	1.0	0.5	0.8	2.2	1799	chr3L	9443509	intron	CG33926 +	chr3L	9444408	intron	CG33926 +	chr3L	9445308	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-149
610	chr3L	9575906	9575942	chr3L	9580986	9581015	jockey	9	5072	4.0	4.0	4.0	1.8	5109	chr3L	9575906	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581015	intron	CG42673 +	chr3L_9_9575001	chr3L_9575001	RAL-149
615	chr3L	9929688	9929699	chr3L	9938452	9938460	roo	4	8768	1.0	2.0	1.5	1.6	8772	chr3L	9929688	intron	CG34356 +	chr3L	9934074	intron	CG34356 +	chr3L	9938460	intron	CG34356 +	chr3L_4_9930001	chr3L_9930001	RAL-149
627	chr3L	11723091	11723116	chr3L	11727875	11727911	Doc	4	4784	1.0	0.5	0.8	2.2	4820	chr3L	11723091	3` UTR	Bmcp +	chr3L	11725501	intron	Bmcp +	chr3L	11727911	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-149
629	chr3L	11864569	11864585	chr3L	11865864	11865880	pogo	4	1293	3.0	4.0	3.5	0.9	1311	chr3L	11864569	intron	CG44837 -	chr3L	11865224	intron	CG44837 -	chr3L	11865880	intron	CG44837 -	chr3L_4_11865001	chr3L_11865001	RAL-149
642	chr3L	12919290	12919309	chr3L	12924765	12924773	Rt1c	4	5468	3.5	1.5	2.5	1.1	5483	chr3L	12919290	intergenic	not near genes	chr3L	12922032	intergenic	not near genes	chr3L	12924773	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-149
651	chr3L	13525172	13525186	chr3L	13532961	13532976	roo	8	7790	7.5	10.0	8.8	0.8	7804	chr3L	13525172	intergenic	not near genes	chr3L	13529074	intergenic	not near genes	chr3L	13532976	intergenic	not near genes	chr3L_8_13525001	chr3L_13525001	RAL-149
655	chr3L	14245588	14245594	chr3L	14245669	14245669	1360	4	84	4.5	3.5	4.0	0.8	81	chr3L	14245588	3` UTR	CR44561 -	chr3L	14245628	3` UTR	CR44561 -	chr3L	14245669	3` UTR	CR44561 -	chr3L_4_14245001	chr3L_14245001	RAL-149
656	chr3L	14267378	14267400	chr3L	14271808	14271830	F-element	9	4428	3.0	1.0	2.0	3.0	4452	chr3L	14267378	intergenic	not near genes	chr3L	14269604	intergenic	not near genes	chr3L	14271830	intergenic	not near genes	chr3L_9_14265001	chr3L_14265001	RAL-149
658	chr3L	14295987	14296015	chr3L	14296472	14296485	roo	10	476	2.5	2.0	2.2	3.1	498	chr3L	14295987	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296485	intron	fz +	chr3L_10_14295001	chr3L_14295001	RAL-149
663	chr3L	14468453	14468468	chr3L	14473651	14473674	copia	4	5204	3.5	2.5	3.0	1.0	5221	chr3L	14468453	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473674	intron	bbg -	chr3L_4_14470001	chr3L_14470001	RAL-149
665	chr3L	15085064	15085084	chr3L	15086218	15086245	1360	8	1153	2.0	3.5	2.8	2.1	1181	chr3L	15085064	intron	cp309 -	chr3L	15085654	intron	cp309 -	chr3L	15086245	intron	cp309 -	chr3L_8_15085001	chr3L_15085001	RAL-149
678	chr3L	16184115	16184140	chr3L	16188921	16188943	X-element	10	4813	1.5	1.5	1.5	4.0	4828	chr3L	16184115	intergenic	not near genes	chr3L	16186529	intergenic	not near genes	chr3L	16188943	intergenic	not near genes	chr3L_10_16185001	chr3L_16185001	RAL-149
681	chr3L	16443849	16443876	chr3L	16446189	16446215	Doc	5	2333	3.0	3.5	3.2	1.2	2366	chr3L	16443849	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446215	intron,intron	CG33158 +,dsx-c73A -	chr3L_5_16445001	chr3L_16445001	RAL-149
682	chr3L	16493975	16494007	chr3L	16494492	16494524	jockey	11	511	3.0	4.5	3.8	2.3	549	chr3L	16493975	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494524	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_11_16490001	chr3L_16490001	RAL-149
685	chr3L	16684032	16684047	chr3L	16689238	16689268	copia	4	5209	0.5	1.5	1.0	2.0	5236	chr3L	16684032	intron,intron	Lasp -,CG43954 -	chr3L	16686650	intron,intron	Lasp -,CG43954 -	chr3L	16689268	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_4_16685001	chr3L_16685001	RAL-149
690	chr3L	16945746	16945756	chr3L	16954881	16954881	roo	4	9138	1.5	5.5	3.5	0.9	9135	chr3L	16945746	exon	Obp73a +	chr3L	16950314	intergenic	not near genes	chr3L	16954881	5` UTR	Nc73EF +	chr3L_4_16950001	chr3L_16950001	RAL-149
692	chr3L	17085010	17085026	chr3L	17094153	17094164	roo	4	9142	1.0	3.0	2.0	1.3	9154	chr3L	17085010	intron	Rbp6 -	chr3L	17089587	intron	Rbp6 -	chr3L	17094164	intron	Rbp6 -	chr3L_4_17085001	chr3L_17085001	RAL-149
694	chr3L	17516993	17517011	chr3L	17524536	17524560	412	7	7546	2.5	6.5	4.5	1.3	7567	chr3L	17516993	intron	CG7564 +	chr3L	17520776	intron	CG7564 +	chr3L	17524560	3` UTR	CG7564 +	chr3L_7_17520001	chr3L_17520001	RAL-149
711	chr3L	18772428	18772442	chr3L	18781088	18781103	roo	6	8670	1.5	1.0	1.2	2.7	8675	chr3L	18772428	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781103	intron	ftz-f1 -	chr3L_6_18775001	chr3L_18775001	RAL-149
713	chr3L	19008842	19008870	chr3L	19009177	19009201	jockey	6	334	1.0	2.0	1.5	2.4	359	chr3L	19008842	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009201	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-149
715	chr3L	19115660	19115667	chr3L	19115820	19115832	BS	4	164	3.5	0.5	2.0	1.3	172	chr3L	19115660	intron	CG14082 -	chr3L	19115746	intron	CG14082 -	chr3L	19115832	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-149
716	chr3L	19117042	19117074	chr3L	19124489	19124516	mdg1	8	7438	6.0	4.5	5.2	1.3	7474	chr3L	19117042	intron	CG14082 -	chr3L	19120779	intron	CG14082 -	chr3L	19124516	intron	CG14082 -	chr3L_8_19120001	chr3L_19120001	RAL-149
717	chr3L	19208059	19208091	chr3L	19209433	19209436	Doc	9	1368	3.0	4.0	3.5	2.0	1377	chr3L	19208059	intron	fz2 -	chr3L	19208748	intron	fz2 -	chr3L	19209436	intron	fz2 -	chr3L_9_19205001	chr3L_19205001	RAL-149
719	chr3L	19820300	19820318	chr3L	19827849	19827861	412	4	7547	1.0	0.5	0.8	2.2	7561	chr3L	19820300	intron	Deaf1 +	chr3L	19824080	intron	Deaf1 +	chr3L	19827861	intron	Deaf1 +	chr3L_4_19820001	chr3L_19820001	RAL-149
720	chr3L	19861845	19861848	chr3L	19863615	19863618	S-element	4	1773	1.0	2.0	1.5	1.6	1773	chr3L	19861845	5` UTR	CR45433 +	chr3L	19862732	intergenic	not near genes	chr3L	19863618	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-149
731	chr3L	21151867	21151897	chr3L	21156947	21156972	flea	5	5076	0.0	1.0	0.5	3.3	5105	chr3L	21151867	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156972	intron	Ac78C -	chr3L_5_21150001	chr3L_21150001	RAL-149
732	chr3L	21243762	21243769	chr3L	21251312	21251331	412	4	7553	3.0	4.5	3.8	0.8	7569	chr3L	21243762	intron	Eip78C +	chr3L	21247546	intron	Eip78C +	chr3L	21251331	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-149
736	chr3L	21749329	21749352	chr3L	21754472	21754481	Doc	8	5146	1.0	3.5	2.2	2.5	5152	chr3L	21749329	intron	Syn1 -	chr3L	21751905	intron	Syn1 -	chr3L	21754481	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-149
741	chr3L	22555768	22555803	chr3L	22563238	22563240	blood	9	7459	1.0	2.5	1.8	3.2	7472	chr3L	22555768	intergenic	not near genes	chr3L	22559504	intergenic	not near genes	chr3L	22563240	intergenic	not near genes	chr3L_9_22555001	chr3L_22555001	RAL-149
743	chr3L	22617190	22617222	chr3L	22624642	22624664	blood	8	7446	2.5	0.5	1.5	3.2	7474	chr3L	22617190	intron	CG14459 -	chr3L	22620927	intron	CG14459 -	chr3L	22624664	intron	CG14459 -	chr3L_8_22620001	chr3L_22620001	RAL-149
745	chr3L	22761407	22761419	chr3L	22766818	22766839	Ivk	5	5422	2.0	0.5	1.2	2.3	5432	chr3L	22761407	intron	SPoCk +	chr3L	22764123	intron	SPoCk +	chr3L	22766839	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-149
747	chr3L	22866004	22866016	chr3L	22867115	22867131	Doc	7	1122	1.5	2.5	2.0	2.3	1127	chr3L	22866004	intron	CG33170 +	chr3L	22866568	intron	CG33170 +	chr3L	22867131	intron	CG33170 +	chr3L_7_22865001	chr3L_22865001	RAL-149
750	chr3L	24168800	24168814	chr3L	24176114	24176114	ZAM	4	7310	1.0	3.0	2.0	1.3	7314	chr3L	24168800	intron	Snap25 +	chr3L	24172457	intron	Snap25 +	chr3L	24176114	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-149
754	chr3R	4105050	4105071	chr3R	4110248	4110261	copia	5	5196	1.0	2.5	1.8	1.8	5211	chr3R	4105050	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110261	intergenic	not near genes	chr3R_5_4105001	chr3R_4105001	RAL-149
755	chr3R	4408418	4408444	chr3R	4412717	4412729	Juan	6	4297	1.0	4.0	2.5	1.7	4311	chr3R	4408418	intron	CG32944 -	chr3R	4410574	intron	CG32944 -	chr3R	4412729	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-149
756	chr3R	4609559	4609583	chr3R	4610723	4610730	1360	6	1158	19.0	8.0	13.5	0.4	1171	chr3R	4609559	intergenic	not near genes	chr3R	4610144	intergenic	not near genes	chr3R	4610730	intergenic	not near genes	chr3R_6_4610001	chr3R_4610001	RAL-149
757	chr3R	4753256	4753276	chr3R	4757542	4757551	F-element	4	4287	5.5	5.0	5.2	0.6	4295	chr3R	4753256	intron,intron	atms +,CG44098 -	chr3R	4755404	intron,intron	atms +,CG44098 -	chr3R	4757551	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-149
763	chr3R	5045848	5045877	chr3R	5052950	5052970	HMS-Beagle	4	7094	3.0	2.0	2.5	1.1	7122	chr3R	5045848	intron	CR43635 -	chr3R	5049409	intergenic	not near genes	chr3R	5052970	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	RAL-149
764	chr3R	5067995	5068009	chr3R	5073504	5073511	mdg3	6	5505	1.0	2.0	1.5	2.4	5516	chr3R	5067995	intergenic	not near genes	chr3R	5070753	intergenic	not near genes	chr3R	5073511	intergenic	not near genes	chr3R_6_5070001	chr3R_5070001	RAL-149
768	chr3R	5338397	5338416	chr3R	5343574	5343578	Rt1c	4	5173	5.5	6.0	5.8	0.6	5181	chr3R	5338397	intron	mtd -	chr3R	5340988	intron	mtd -	chr3R	5343578	intron	mtd -	chr3R_4_5340001	chr3R_5340001	RAL-149
769	chr3R	5338421	5338433	chr3R	5343564	5343595	Rt1c	7	5163	4.0	2.5	3.2	1.7	5174	chr3R	5338421	intron	mtd -	chr3R	5341008	intron	mtd -	chr3R	5343595	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-149
772	chr3R	5746014	5746040	chr3R	5746254	5746281	pogo	4	240	3.5	2.5	3.0	1.0	267	chr3R	5746014	3` UTR	Madm +	chr3R	5746148	3` UTR	Madm +	chr3R	5746281	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-149
775	chr3R	5927578	5927591	chr3R	5927802	5927807	pogo	4	225	4.0	3.5	3.8	0.8	229	chr3R	5927578	intron	CG34113 -	chr3R	5927692	intron	CG34113 -	chr3R	5927807	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-149
777	chr3R	6121176	6121186	chr3R	6121390	6121404	BS	4	214	0.0	3.5	1.8	1.4	228	chr3R	6121176	intergenic	not near genes	chr3R	6121290	intergenic	not near genes	chr3R	6121404	intergenic	not near genes	chr3R_4_6120001	chr3R_6120001	RAL-149
779	chr3R	6175175	6175207	chr3R	6182443	6182466	HMS-Beagle2	9	7262	0.5	1.0	0.8	5.0	7291	chr3R	6175175	intergenic	Osi1 +	chr3R	6178820	intron	CR45194 +	chr3R	6182466	intergenic	CR45194 +	chr3R_9_6175001	chr3R_6175001	RAL-149
782	chr3R	6206285	6206319	chr3R	6206498	6206514	BS	5	207	7.5	2.0	4.8	0.9	229	chr3R	6206285	exon	Osi24 +	chr3R	6206400	intron	Osi24 +	chr3R	6206514	intron	Osi24 +	chr3R_5_6205001	chr3R_6205001	RAL-149
786	chr3R	6737526	6737530	chr3R	6739293	6739299	Doc	4	1776	1.5	3.0	2.2	1.2	1773	chr3R	6737526	intron	pb -	chr3R	6738412	intron	pb -	chr3R	6739299	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-149
794	chr3R	7729467	7729491	chr3R	7737404	7737429	Stalker2	4	7937	2.5	4.5	3.5	0.9	7962	chr3R	7729467	intergenic	not near genes	chr3R	7733448	intergenic	not near genes	chr3R	7737429	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	RAL-149
797	chr3R	8207563	8207588	chr3R	8208399	8208419	F-element	6	833	0.5	2.5	1.5	2.4	856	chr3R	8207563	intergenic	not near genes	chr3R	8207991	intergenic	not near genes	chr3R	8208419	intergenic	not near genes	chr3R_6_8205001	chr3R_8205001	RAL-149
799	chr3R	8403013	8403041	chr3R	8412174	8412178	roo	11	9154	5.0	4.5	4.8	1.9	9165	chr3R	8403013	intron	CG45263 -	chr3R	8407596	intron	CG45263 -	chr3R	8412178	intron	CG45263 -	chr3R_11_8405001	chr3R_8405001	RAL-149
801	chr3R	8570484	8570510	chr3R	8575112	8575129	HMS-Beagle	7	4625	3.5	4.5	4.0	1.4	4645	chr3R	8570484	intergenic	not near genes	chr3R	8572806	intergenic	not near genes	chr3R	8575129	intergenic	not near genes	chr3R_7_8570001	chr3R_8570001	RAL-149
803	chr3R	8601775	8601794	chr3R	8610927	8610941	roo	4	9146	5.0	4.0	4.5	0.7	9166	chr3R	8601775	intron	5-HT2B +	chr3R	8606358	intron	5-HT2B +	chr3R	8610941	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	RAL-149
804	chr3R	8707376	8707381	chr3R	8709799	8709822	jockey	5	2428	3.5	2.5	3.0	1.2	2446	chr3R	8707376	intergenic	not near genes	chr3R	8708599	intergenic	not near genes	chr3R	8709822	intergenic	not near genes	chr3R_5_8705001	chr3R_8705001	RAL-149
823	chr3R	11841075	11841097	chr3R	11846251	11846269	BS	6	5178	3.5	3.0	3.2	1.4	5194	chr3R	11841075	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846269	intron	CG6959 -	chr3R_6_11840001	chr3R_11840001	RAL-149
837	chr3R	13143049	13143066	chr3R	13148614	13148643	mdg3	5	5570	6.0	6.5	6.2	0.7	5594	chr3R	13143049	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145846	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148643	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	RAL-149
850	chr3R	14194426	14194459	chr3R	14203575	14203608	roo	8	9145	5.5	2.0	3.8	1.7	9182	chr3R	14194426	intron	Dop1R1 -	chr3R	14199017	intron	Dop1R1 -	chr3R	14203608	intron	Dop1R1 -	chr3R_8_14195001	chr3R_14195001	RAL-149
863	chr3R	15079827	15079831	chr3R	15080054	15080072	pogo	4	234	1.5	1.0	1.2	1.8	245	chr3R	15079827	3` UTR	CG6966 -	chr3R	15079950	3` UTR	CG6966 -	chr3R	15080072	3` UTR	CG6966 -	chr3R_4_15075001	chr3R_15075001	RAL-149
864	chr3R	15162545	15162552	chr3R	15167308	15167318	F-element	4	4765	2.5	0.5	1.5	1.6	4773	chr3R	15162545	intron	Gyc88E +	chr3R	15164932	intron	Gyc88E +	chr3R	15167318	intron	Gyc88E +	chr3R_4_15160001	chr3R_15160001	RAL-149
869	chr3R	15601173	15601193	chr3R	15608684	15608713	412	10	7513	4.5	2.0	3.2	2.4	7540	chr3R	15601173	intergenic	not near genes	chr3R	15604943	intergenic	not near genes	chr3R	15608713	intergenic	not near genes	chr3R_10_15600001	chr3R_15600001	RAL-149
870	chr3R	15618745	15618761	chr3R	15626203	15626220	blood	5	7464	1.0	5.0	3.0	1.2	7475	chr3R	15618745	intergenic	not near genes	chr3R	15622482	intergenic	not near genes	chr3R	15626220	intergenic	not near genes	chr3R_5_15620001	chr3R_15620001	RAL-149
874	chr3R	16756330	16756354	chr3R	16762511	16762533	diver	8	6184	2.0	3.5	2.8	2.1	6203	chr3R	16756330	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762533	intron	bxd -	chr3R_8_16755001	chr3R_16755001	RAL-149
878	chr3R	17591287	17591305	chr3R	17591720	17591739	F-element	4	429	9.0	3.5	6.2	0.6	452	chr3R	17591287	intergenic	not near genes	chr3R	17591513	intergenic	not near genes	chr3R	17591739	intergenic	not near genes	chr3R_4_17590001	chr3R_17590001	RAL-149
879	chr3R	17591306	17591323	chr3R	17591718	17591759	F-element	8	420	3.0	3.5	3.2	1.9	453	chr3R	17591306	intergenic	not near genes	chr3R	17591532	intergenic	not near genes	chr3R	17591759	intergenic	not near genes	chr3R_8_17590001	chr3R_17590001	RAL-149
884	chr3R	17925868	17925887	chr3R	17927320	17927347	hobo	7	1462	2.0	5.0	3.5	1.6	1479	chr3R	17925868	intron	cpo +	chr3R	17926608	intron	cpo +	chr3R	17927347	intron	cpo +	chr3R_7_17925001	chr3R_17925001	RAL-149
885	chr3R	18032787	18032809	chr3R	18040455	18040477	opus	5	7664	0.0	0.0	0.0	5.0	7690	chr3R	18032787	intergenic	not near genes	chr3R	18036632	intergenic	not near genes	chr3R	18040477	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	RAL-149
902	chr3R	20156697	20156723	chr3R	20165867	20165873	roo	6	9163	2.5	5.5	4.0	1.2	9176	chr3R	20156697	intergenic	not near genes	chr3R	20161285	intergenic	not near genes	chr3R	20165873	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-149
906	chr3R	20506592	20506616	chr3R	20507395	20507405	BS	5	798	3.0	4.0	3.5	1.1	813	chr3R	20506592	intergenic	Or92a +	chr3R	20506998	intergenic	CG4288 -	chr3R	20507405	3` UTR	CG4288 -	chr3R_5_20505001	chr3R_20505001	RAL-149
911	chr3R	20854509	20854519	chr3R	20859280	20859289	Doc	4	4778	2.5	4.5	3.5	0.9	4780	chr3R	20854509	intron	Ir93a -	chr3R	20856899	intron	Ir93a -	chr3R	20859289	exon	Ir93a -	chr3R_4_20855001	chr3R_20855001	RAL-149
916	chr3R	21141674	21141696	chr3R	21150155	21150161	Tirant	5	8472	5.0	2.5	3.8	1.0	8487	chr3R	21141674	intron	SNF4Agamma +	chr3R	21145918	intron	SNF4Agamma +	chr3R	21150161	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	RAL-149
917	chr3R	21141698	21141706	chr3R	21150153	21150163	Tirant	4	8462	2.5	2.5	2.5	1.1	8465	chr3R	21141698	intron	SNF4Agamma +	chr3R	21145930	intron	SNF4Agamma +	chr3R	21150163	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-149
922	chr3R	21761121	21761155	chr3R	21768509	21768522	mdg1	8	7383	3.0	3.5	3.2	1.9	7401	chr3R	21761121	exon	CG42335 +	chr3R	21764822	intron	CG42335 +	chr3R	21768522	exon	CG42335 +	chr3R_8_21760001	chr3R_21760001	RAL-149
930	chr3R	22450543	22450577	chr3R	22453181	22453217	NOF	10	2634	6.0	5.5	5.8	1.5	2674	chr3R	22450543	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453217	intron	CG34376 +	chr3R_10_22450001	chr3R_22450001	RAL-149
938	chr3R	22881207	22881227	chr3R	22884897	22884924	Doc	5	3690	1.5	0.5	1.0	2.5	3717	chr3R	22881207	intergenic	not near genes	chr3R	22883066	intergenic	not near genes	chr3R	22884924	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	RAL-149
952	chr3R	23558403	23558428	chr3R	23560181	23560202	Bari1	6	1775	3.5	2.0	2.8	1.6	1799	chr3R	23558403	intron	beat-IV +	chr3R	23559302	intron	beat-IV +	chr3R	23560202	intron	beat-IV +	chr3R_6_23555001	chr3R_23555001	RAL-149
957	chr3R	24072088	24072107	chr3R	24072526	24072528	jockey	5	431	5.0	0.0	2.5	1.4	440	chr3R	24072088	intron	4EHP -	chr3R	24072308	intron	4EHP -	chr3R	24072528	intron	4EHP -	chr3R_5_24070001	chr3R_24070001	RAL-149
958	chr3R	24076919	24076949	chr3R	24078386	24078413	hobo	11	1460	4.5	10.0	7.2	1.3	1494	chr3R	24076919	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078413	intron	4EHP -	chr3R_11_24075001	chr3R_24075001	RAL-149
959	chr3R	24207227	24207246	chr3R	24212289	24212319	flea	5	5069	2.0	5.0	3.5	1.1	5092	chr3R	24207227	intron	twin -	chr3R	24209773	intron	twin -	chr3R	24212319	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-149
966	chr3R	24730099	24730107	chr3R	24732476	24732485	Doc	4	2375	4.0	0.0	2.0	1.3	2386	chr3R	24730099	intron	tok +	chr3R	24731292	intron	tok +	chr3R	24732485	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-149
969	chr3R	24927149	24927162	chr3R	24931922	24931939	Doc	5	4779	1.5	0.5	1.0	2.5	4790	chr3R	24927149	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931939	intergenic	CG11771 +	chr3R_5_24925001	chr3R_24925001	RAL-149
976	chr3R	25832705	25832722	chr3R	25841871	25841899	roo	9	9171	2.5	3.5	3.0	2.2	9194	chr3R	25832705	exon	alpha4GT2 +	chr3R	25837302	intron	alpha4GT2 +	chr3R	25841899	exon	alpha4GT2 +	chr3R_9_25835001	chr3R_25835001	RAL-149
983	chr3R	26376333	26376356	chr3R	26385493	26385498	roo	4	9153	2.5	0.5	1.5	1.6	9165	chr3R	26376333	intergenic	not near genes	chr3R	26380916	intergenic	not near genes	chr3R	26385498	intergenic	not near genes	chr3R_4_26380001	chr3R_26380001	RAL-149
984	chr3R	26558340	26558361	chr3R	26565639	26565666	Stalker4	6	7307	3.0	4.0	3.5	1.3	7326	chr3R	26558340	intron	scrib +	chr3R	26562003	intron	scrib +	chr3R	26565666	intron	scrib +	chr3R_6_26560001	chr3R_26560001	RAL-149
985	chr3R	26642746	26642759	chr3R	26643122	26643152	jockey	6	383	2.5	4.5	3.5	1.3	406	chr3R	26642746	intergenic	not near genes	chr3R	26642949	intergenic	not near genes	chr3R	26643152	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	RAL-149
986	chr3R	26810570	26810583	chr3R	26811037	26811053	roo	4	470	3.5	5.5	4.5	0.7	483	chr3R	26810570	intron	Tl +	chr3R	26810812	intron	Tl +	chr3R	26811053	intron	Tl +	chr3R_4_26810001	chr3R_26810001	RAL-149
990	chr3R	27140539	27140548	chr3R	27148129	27148132	412	8	7596	4.5	6.0	5.2	1.3	7593	chr3R	27140539	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148132	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	RAL-149
993	chr3R	27342793	27342818	chr3R	27351373	27351399	Tirant	5	8577	2.5	2.0	2.2	1.6	8606	chr3R	27342793	intron	CG42534 +	chr3R	27347096	intron	CG42534 +	chr3R	27351399	intron	CG42534 +	chr3R_5_27345001	chr3R_27345001	RAL-149
1005	chr3R	27856776	27856790	chr3R	27858251	27858256	hopper2	4	1471	2.5	1.0	1.8	1.4	1480	chr3R	27856776	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858256	intron	CG34353 -	chr3R_4_27855001	chr3R_27855001	RAL-149
1006	chr3R	28068507	28068530	chr3R	28073934	28073972	I-element	8	5436	1.0	2.0	1.5	3.2	5465	chr3R	28068507	intron	CG34362 +	chr3R	28071240	intron	CG34362 +	chr3R	28073972	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	RAL-149
1008	chr3R	28173682	28173705	chr3R	28181102	28181135	mdg1	8	7426	1.0	5.0	3.0	2.0	7453	chr3R	28173682	intron	CG34354 +	chr3R	28177408	intron	CG34354 +	chr3R	28181135	intron	CG34354 +	chr3R_8_28175001	chr3R_28175001	RAL-149
1010	chr3R	28253354	28253372	chr3R	28255845	28255879	jockey	8	2496	3.5	3.5	3.5	1.8	2525	chr3R	28253354	intergenic	not near genes	chr3R	28254616	intergenic	not near genes	chr3R	28255879	intergenic	not near genes	chr3R_8_28250001	chr3R_28250001	RAL-149
1017	chr3R	28758284	28758312	chr3R	28763900	28763912	roo	4	5611	2.5	0.5	1.5	1.6	5628	chr3R	28758284	intergenic	aqrs -	chr3R	28761098	intergenic	not near genes	chr3R	28763912	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-149
1018	chr3R	28792879	28792903	chr3R	28797962	28797977	jockey	11	5083	2.0	4.0	3.0	2.8	5098	chr3R	28792879	intergenic	not near genes	chr3R	28795428	intergenic	not near genes	chr3R	28797977	intergenic	not near genes	chr3R_11_28795001	chr3R_28795001	RAL-149
1023	chr3R	29319831	29319849	chr3R	29320141	29320168	jockey	7	316	1.0	2.0	1.5	2.8	337	chr3R	29319831	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320168	intergenic	not near genes	chr3R_7_29315001	chr3R_29315001	RAL-149
1036	chr3R	29738277	29738294	chr3R	29739729	29739761	hobo	7	1457	2.5	3.0	2.8	1.8	1484	chr3R	29738277	5` UTR	CG1969 +	chr3R	29739019	intron	CG1969 +	chr3R	29739761	5` UTR	CG1969 +	chr3R_7_29735001	chr3R_29735001	RAL-149
1038	chr3R	29882035	29882048	chr3R	29891174	29891201	roo	7	9150	1.5	3.5	2.5	2.0	9166	chr3R	29882035	intron	CG31038 +	chr3R	29886618	intron	CG31038 +	chr3R	29891201	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RAL-149
1041	chr3R	30084865	30084885	chr3R	30086314	30086334	hobo	6	1456	0.5	2.5	1.5	2.4	1469	chr3R	30084865	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086334	intron	sima +	chr3R_6_30085001	chr3R_30085001	RAL-149
1049	chr3R	30317324	30317358	chr3R	30324915	30324950	roo	9	7584	2.0	2.0	2.0	3.0	7626	chr3R	30317324	intron	hdc +	chr3R	30321137	intron	hdc +	chr3R	30324950	intron	hdc +	chr3R_9_30320001	chr3R_30320001	RAL-149
1051	chr3R	30375539	30375570	chr3R	30383163	30383193	412	4	7623	1.5	4.5	3.0	1.0	7654	chr3R	30375539	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383193	intergenic	not near genes	chr3R_4_30375001	chr3R_30375001	RAL-149
1052	chr3R	30396233	30396246	chr3R	30404481	30404498	roo	6	8255	6.5	4.5	5.5	0.9	8265	chr3R	30396233	intergenic	not near genes	chr3R	30400366	intergenic	not near genes	chr3R	30404498	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	RAL-149
1054	chr3R	30480478	30480508	chr3R	30482940	30482959	jockey	8	2456	3.5	4.0	3.8	1.7	2481	chr3R	30480478	intron	PH4alphaEFB +	chr3R	30481718	intron	PH4alphaEFB +	chr3R	30482959	intron	PH4alphaEFB +	chr3R_8_30480001	chr3R_30480001	RAL-149
1060	chr3R	30818814	30818843	chr3R	30820379	30820405	1360	5	1560	1.5	1.5	1.5	2.0	1591	chr3R	30818814	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820405	intron	cindr +	chr3R_5_30815001	chr3R_30815001	RAL-149
1062	chr3R	31074239	31074260	chr3R	31081834	31081855	springer	10	7594	5.5	1.5	3.5	2.2	7616	chr3R	31074239	intron	Sox100B +	chr3R	31078047	intron	Sox100B +	chr3R	31081855	intron	Sox100B +	chr3R_10_31075001	chr3R_31075001	RAL-149
1065	chr3R	31413113	31413122	chr3R	31418289	31418306	copia	4	5183	4.5	5.5	5.0	0.7	5193	chr3R	31413113	intron	Gprk2 +	chr3R	31415710	intron	Gprk2 +	chr3R	31418306	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-149
1071	chr3R	31691536	31691564	chr3R	31696296	31696320	Doc	7	4749	4.0	4.5	4.2	1.3	4784	chr3R	31691536	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696320	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-149
1077	chr3R	31997997	31998024	chr3R	32005460	32005490	blood	10	7459	2.5	2.0	2.2	3.1	7493	chr3R	31997997	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005490	intron	heph -	chr3R_10_32000001	chr3R_32000001	RAL-149
1080	chr4	76498	76527	chr4	81936	81953	I-element	6	5430	2.5	1.0	1.8	2.1	5455	chr4	76498	intron	pan +	chr4	79226	intron	pan +	chr4	81953	intron	pan +	chr4_6_75001	chr4_75001	RAL-149
1081	chr4	671617	671635	chr4	680186	680200	Tirant	7	8565	2.5	3.0	2.8	1.8	8583	chr4	671617	intron	CG11360 +	chr4	675908	intron	CG11360 +	chr4	680200	intron	CG11360 +	chr4_7_675001	chr4_675001	RAL-149
1084	chrX	551420	551453	chrX	558982	559013	412	4	7560	3.0	4.0	3.5	0.9	7593	chrX	551420	intron	Appl +	chrX	555216	intron	Appl +	chrX	559013	intron	Appl +	chrX_4_555001	chrX_555001	RAL-149
1087	chrX	827617	827634	chrX	835391	835419	roo	4	7784	2.5	4.0	3.2	1.0	7802	chrX	827617	intron	CG43867 -	chrX	831518	intron	CG43867 -	chrX	835419	intron	CG43867 -	chrX_4_830001	chrX_830001	RAL-149
1088	chrX	906701	906729	chrX	908490	908495	S-element	8	1782	4.5	5.0	4.8	1.4	1794	chrX	906701	intron	CG43867 -	chrX	907598	intron	CG43867 -	chrX	908495	intron	CG43867 -	chrX_8_905001	chrX_905001	RAL-149
1092	chrX	1357778	1357813	chrX	1367946	1367973	Doc	6	10161	1.0	2.5	1.8	2.1	10195	chrX	1357778	intergenic	png -	chrX	1362876	intergenic	not near genes	chrX	1367973	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-149
1094	chrX	1518057	1518068	chrX	1523438	1523458	jockey	4	5388	3.0	3.5	3.2	1.0	5401	chrX	1518057	intergenic	inc +	chrX	1520758	intergenic	not near genes	chrX	1523458	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-149
1095	chrX	1627984	1628002	chrX	1635443	1635470	gtwin	9	7462	1.0	2.5	1.8	3.2	7486	chrX	1627984	intron,intron	Mur2B -,br +	chrX	1631727	intron,intron	Mur2B -,br +	chrX	1635470	intron,intron	Mur2B -,br +	chrX_9_1630001	chrX_1630001	RAL-149
1101	chrX	2844900	2844930	chrX	2852306	2852336	mdg1	7	7401	3.5	1.5	2.5	2.0	7436	chrX	2844900	intron	kirre +	chrX	2848618	intron	kirre +	chrX	2852336	intron	kirre +	chrX_7_2845001	chrX_2845001	RAL-149
1104	chrX	3415022	3415039	chrX	3421202	3421219	3S18	4	6181	1.0	1.0	1.0	2.0	6197	chrX	3415022	intron,intron	CR44999 +,CG12535 -	chrX	3418120	intron,intron	CR44999 +,CG12535 -	chrX	3421219	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-149
1105	chrX	3493091	3493122	chrX	3502250	3502281	roo	4	9154	3.0	3.0	3.0	1.0	9190	chrX	3493091	intron,intron	CR44999 +,Gas8 -	chrX	3497686	intron,intron	CR44999 +,Gas8 -	chrX	3502281	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-149
1106	chrX	3726770	3726793	chrX	3730155	3730175	NOF	5	3386	3.0	2.0	2.5	1.4	3405	chrX	3726770	intron	tlk +	chrX	3728472	intron	tlk +	chrX	3730175	intron	tlk +	chrX_5_3725001	chrX_3725001	RAL-149
1107	chrX	3842335	3842351	chrX	3842564	3842587	pogo	4	236	1.0	1.5	1.2	1.8	252	chrX	3842335	intron	ec +	chrX	3842461	intron	ec +	chrX	3842587	intron	ec +	chrX_4_3840001	chrX_3840001	RAL-149
1109	chrX	3986867	3986891	chrX	3994495	3994504	412	6	7622	5.0	1.5	3.2	1.4	7637	chrX	3986867	intergenic	not near genes	chrX	3990686	intergenic	not near genes	chrX	3994504	intergenic	not near genes	chrX_6_3990001	chrX_3990001	RAL-149
1113	chrX	4731828	4731850	chrX	4736904	4736922	jockey	8	5081	4.0	1.0	2.5	2.3	5094	chrX	4731828	intergenic	not near genes	chrX	4734375	intergenic	not near genes	chrX	4736922	intergenic	not near genes	chrX_8_4730001	chrX_4730001	RAL-149
1115	chrX	4792379	4792410	chrX	4792811	4792827	jockey	4	424	1.5	4.0	2.8	1.1	448	chrX	4792379	intergenic	not near genes	chrX	4792603	intergenic	not near genes	chrX	4792827	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-149
1116	chrX	4827987	4828002	chrX	4835340	4835373	Stalker4	7	7357	2.0	3.5	2.8	1.8	7386	chrX	4827987	intergenic	not near genes	chrX	4831680	intergenic	not near genes	chrX	4835373	intergenic	not near genes	chrX_7_4830001	chrX_4830001	RAL-149
1127	chrX	6392883	6392901	chrX	6397628	6397661	Doc	7	4756	3.5	5.0	4.2	1.3	4778	chrX	6392883	intergenic	not near genes	chrX	6395272	intergenic	not near genes	chrX	6397661	intergenic	not near genes	chrX_7_6395001	chrX_6395001	RAL-149
1129	chrX	6562835	6562851	chrX	6571300	6571321	Tirant	7	8467	2.5	4.0	3.2	1.7	8486	chrX	6562835	intron	CG34417 +	chrX	6567078	intron	CG34417 +	chrX	6571321	intron	CG34417 +	chrX_7_6565001	chrX_6565001	RAL-149
1135	chrX	7023604	7023633	chrX	7030992	7030993	Tabor	6	7377	1.5	5.0	3.2	1.4	7389	chrX	7023604	intron	CG12541 -	chrX	7027298	intron	CG12541 -	chrX	7030993	intron	CG12541 -	chrX_6_7025001	chrX_7025001	RAL-149
1137	chrX	7125244	7125275	chrX	7134403	7134432	roo	8	9154	3.0	3.0	3.0	2.0	9188	chrX	7125244	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134432	intergenic	not near genes	chrX_8_7125001	chrX_7125001	RAL-149
1144	chrX	8948764	8948791	chrX	8956270	8956279	roo	5	7498	1.0	1.5	1.2	2.3	7515	chrX	8948764	intron	rdgA +	chrX	8952522	intron	rdgA +	chrX	8956279	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-149
1146	chrX	9575790	9575823	chrX	9576113	9576138	mdg3	13	316	3.0	3.5	3.2	3.1	348	chrX	9575790	intron,exon	CG32699 -,CG42395 -	chrX	9575964	intron,intron	CG32699 -,CG42395 -	chrX	9576138	intron,5` UTR	CG32699 -,CG42395 -	chrX_13_9575001	chrX_9575001	RAL-149
1153	chrX	10550858	10550889	chrX	10552318	10552334	hobo	9	1456	1.5	1.5	1.5	3.6	1476	chrX	10550858	intron	spri -	chrX	10551596	intron	spri -	chrX	10552334	intron	spri -	chrX_9_10550001	chrX_10550001	RAL-149
1154	chrX	10686067	10686084	chrX	10691188	10691220	roo	6	5130	1.5	5.0	3.2	1.4	5153	chrX	10686067	intron	X11Lbeta +	chrX	10688644	intron	X11Lbeta +	chrX	10691220	intron	X11Lbeta +	chrX_6_10685001	chrX_10685001	RAL-149
1159	chrX	11312064	11312095	chrX	11319417	11319426	Stalker2	10	7342	0.5	3.0	1.8	3.6	7362	chrX	11312064	intergenic	not near genes	chrX	11315745	intergenic	not near genes	chrX	11319426	intergenic	not near genes	chrX_10_11315001	chrX_11315001	RAL-149
1162	chrX	12301966	12301991	chrX	12303261	12303289	X-element	5	1295	2.0	4.0	3.0	1.2	1323	chrX	12301966	intron	Ten-a +	chrX	12302628	intron	Ten-a +	chrX	12303289	intron	Ten-a +	chrX_5_12300001	chrX_12300001	RAL-149
1166	chrX	13429475	13429480	chrX	13430612	13430629	jockey	4	1143	0.5	4.0	2.2	1.2	1154	chrX	13429475	intergenic	not near genes	chrX	13430052	intergenic	not near genes	chrX	13430629	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-149
1167	chrX	13429481	13429495	chrX	13430609	13430625	jockey	4	1135	0.5	3.5	2.0	1.3	1144	chrX	13429481	intergenic	not near genes	chrX	13430053	intergenic	not near genes	chrX	13430625	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-149
1170	chrX	14105024	14105056	chrX	14114171	14114191	roo	9	9137	4.0	5.0	4.5	1.6	9167	chrX	14105024	intergenic	not near genes	chrX	14109608	intergenic	not near genes	chrX	14114191	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-149
1175	chrX	14818776	14818798	chrX	14823980	14824001	copia	6	5203	2.5	5.0	3.8	1.2	5225	chrX	14818776	intron	rut -	chrX	14821388	intron	rut -	chrX	14824001	intron	rut -	chrX_6_14820001	chrX_14820001	RAL-149
1179	chrX	15413052	15413065	chrX	15417354	15417364	Juan	4	4301	6.5	3.5	5.0	0.7	4312	chrX	15413052	intron	Cngl -	chrX	15415208	intron	Cngl -	chrX	15417364	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-149
1180	chrX	15413069	15413082	chrX	15417345	15417384	Juan	4	4288	4.5	3.0	3.8	0.8	4315	chrX	15413069	intron	Cngl -	chrX	15415226	intron	Cngl -	chrX	15417384	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-149
1181	chrX	15435689	15435693	chrX	15436118	15436125	rover	4	429	4.0	6.5	5.2	0.6	436	chrX	15435689	intron	Cngl -	chrX	15435907	intron	Cngl -	chrX	15436125	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-149
1194	chrX	18194083	18194105	chrX	18194601	18194638	BS	5	527	1.5	2.0	1.8	1.8	555	chrX	18194083	intron	Frq2 +	chrX	18194360	intron	Frq2 +	chrX	18194638	intron	Frq2 +	chrX_5_18190001	chrX_18190001	RAL-149
1202	chrX	19060418	19060429	chrX	19065194	19065199	Doc	5	4775	4.5	3.5	4.0	1.0	4781	chrX	19060418	intron	CG14190 +	chrX	19062808	intron	CG14190 +	chrX	19065199	intron	CG14190 +	chrX_5_19060001	chrX_19060001	RAL-149
1205	chrX	19472138	19472158	chrX	19472688	19472707	jockey	8	558	2.0	4.0	3.0	2.0	569	chrX	19472138	intergenic	kek5 +	chrX	19472422	intergenic	not near genes	chrX	19472707	intergenic	not near genes	chrX_8_19470001	chrX_19470001	RAL-149
1213	chrX	20504123	20504152	chrX	20505644	20505661	transib2	6	1514	3.0	2.0	2.5	1.7	1538	chrX	20504123	intron	RhoGAP19D -	chrX	20504892	intron	RhoGAP19D -	chrX	20505661	intron	RhoGAP19D -	chrX_6_20500001	chrX_20500001	RAL-149
1215	chrX	20940721	20940751	chrX	20942190	20942199	hobo	10	1461	2.0	4.0	3.0	2.5	1478	chrX	20940721	intergenic	not near genes	chrX	20941460	intergenic	not near genes	chrX	20942199	intergenic	not near genes	chrX_10_20940001	chrX_20940001	RAL-149
1216	chrX	21086130	21086160	chrX	21087159	21087189	jockey	11	1023	3.5	3.0	3.2	2.6	1059	chrX	21086130	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087189	intergenic	not near genes	chrX_11_21085001	chrX_21085001	RAL-149
1221	chrX	21458710	21458725	chrX	21464125	21464161	Ivk	5	5425	1.5	2.0	1.8	1.8	5451	chrX	21458710	intergenic	not near genes	chrX	21461436	intergenic	not near genes	chrX	21464161	intergenic	not near genes	chrX_5_21460001	chrX_21460001	RAL-149
1225	chrX	22697505	22697523	chrX	22701795	22701820	Juan	5	4289	1.5	2.5	2.0	1.7	4315	chrX	22697505	intron	CR44997 +	chrX	22699662	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_5_22695001	chrX_22695001	RAL-149