SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47445 47469 chr2L 52569 52608 jockey 5 5136 3.0 3.5 3.2 1.2 5163 chr2L 47445 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52608 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-142 2 chr2L 263267 263317 chr2L 263448 263498 15 178 1.0 4.5 2.8 3.9 231 chr2L 263267 intron,3` UTR CG3645 -,CG17075 - chr2L 263382 intron,3` UTR CG3645 -,CG17075 - chr2L 263498 intron,3` UTR CG3645 -,CG17075 - chr2L_15_260001 chr2L_260001 RAL-142 3 chr2L 276546 276559 chr2L 276614 276637 6 87 6.0 2.5 4.2 1.2 91 chr2L 276546 intron CG17078 - chr2L 276592 intron CG17078 - chr2L 276637 intron CG17078 - chr2L_6_275001 chr2L_275001 RAL-142 4 chr2L 297656 297719 chr2L 297786 297814 16 123 6.5 3.0 4.8 2.8 158 chr2L 297656 intergenic Hop +,Pi3K21B + chr2L 297735 intergenic Pi3K21B +,Hop + chr2L 297814 intergenic Pi3K21B +,Hop + chr2L_16_295001 chr2L_295001 RAL-142 5 chr2L 325139 325148 chr2L 325242 325248 4 106 5.5 7.0 6.2 0.6 109 chr2L 325139 intron Plc21C + chr2L 325194 intron Plc21C + chr2L 325248 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-142 6 chr2L 347854 347915 chr2L 355389 355430 blood 14 7529 3.5 4.0 3.8 2.9 7576 chr2L 347854 3` UTR Plc21C + chr2L 351642 intron Plc21C + chr2L 355430 3` UTR Plc21C + chr2L_14_350001 chr2L_350001 RAL-142 7 chr2L 407914 407969 chr2L 408030 408073 13 109 3.5 3.5 3.5 2.9 159 chr2L 407914 3` UTR RpI135 + chr2L 407994 intergenic RpI135 +,AP-2alpha - chr2L 408073 3` UTR AP-2alpha - chr2L_13_405001 chr2L_405001 RAL-142 8 chr2L 459388 459428 chr2L 459480 459533 13 96 7.0 8.0 7.5 1.5 145 chr2L 459388 3` UTR CG4297 - chr2L 459460 3` UTR CG4297 - chr2L 459533 3` UTR CG4297 - chr2L_13_455001 chr2L_455001 RAL-142 9 chr2L 467340 467358 chr2L 467465 467486 15 130 13.0 18.5 15.8 0.9 146 chr2L 467340 intron CG4297 - chr2L 467413 intron CG4297 - chr2L 467486 intron CG4297 - chr2L_15_465001 chr2L_465001 RAL-142 10 chr2L 590603 590615 chr2L 590724 590728 7 121 8.0 1.5 4.8 1.2 125 chr2L 590603 intron Gsc - chr2L 590666 intron Gsc - chr2L 590728 intron Gsc - chr2L_7_590001 chr2L_590001 RAL-142 11 chr2L 634974 635007 chr2L 635096 635115 9 119 4.0 7.0 5.5 1.4 141 chr2L 634974 intergenic not near genes chr2L 635044 intergenic not near genes chr2L 635115 intergenic not near genes chr2L_9_635001 chr2L_635001 RAL-142 12 chr2L 635219 635261 chr2L 635661 635679 10 441 5.5 6.0 5.8 1.5 460 chr2L 635219 intergenic not near genes chr2L 635449 intergenic not near genes chr2L 635679 intergenic not near genes chr2L_10_635001 chr2L_635001 RAL-142 13 chr2L 666243 666306 chr2L 666354 666392 8 101 5.0 1.5 3.2 1.9 149 chr2L 666243 intron ds - chr2L 666318 intron ds - chr2L 666392 intron ds - chr2L_8_665001 chr2L_665001 RAL-142 14 chr2L 686930 686952 chr2L 695957 695998 roo 6 9042 0.0 1.5 0.8 3.3 9068 chr2L 686930 intron ds - chr2L 691464 intron ds - chr2L 695998 intron ds - chr2L_6_690001 chr2L_690001 RAL-142 15 chr2L 736844 736897 chr2L 736984 737037 18 140 7.5 7.0 7.2 2.2 193 chr2L 736844 intergenic Eaat2 - chr2L 736940 intergenic Eaat2 - chr2L 737037 intergenic Eaat2 - chr2L_18_735001 chr2L_735001 RAL-142 16 chr2L 763594 763628 chr2L 763672 763707 7 89 3.0 2.5 2.8 1.8 113 chr2L 763594 intergenic not near genes chr2L 763650 intergenic not near genes chr2L 763707 intergenic not near genes chr2L_7_760001 chr2L_760001 RAL-142 17 chr2L 877812 877817 chr2L 877925 877933 4 115 19.0 5.5 12.2 0.3 121 chr2L 877812 3` UTR,exon CG15824 -,ninaA + chr2L 877872 3` UTR,intron CG15824 -,ninaA + chr2L 877933 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-142 18 chr2L 877820 877878 chr2L 877923 877978 19 105 5.5 5.0 5.2 3.1 158 chr2L 877820 3` UTR,exon CG15824 -,ninaA + chr2L 877899 3` UTR,intron CG15824 -,ninaA + chr2L 877978 3` UTR,exon CG15824 -,ninaA + chr2L_19_875001 chr2L_875001 RAL-142 19 chr2L 892383 892427 chr2L 892522 892572 7 144 5.0 2.0 3.5 1.6 189 chr2L 892383 intergenic not near genes chr2L 892478 intergenic not near genes chr2L 892572 intergenic not near genes chr2L_7_890001 chr2L_890001 RAL-142 20 chr2L 919914 919928 chr2L 920005 920039 6 106 3.5 0.0 1.8 2.1 125 chr2L 919914 intergenic not near genes chr2L 919976 intergenic not near genes chr2L 920039 intergenic not near genes chr2L_6_915001 chr2L_915001 RAL-142 21 chr2L 922431 922459 chr2L 922547 922575 8 114 10.0 3.0 6.5 1.1 144 chr2L 922431 intergenic CG4341 + chr2L 922503 intergenic CG4341 + chr2L 922575 intergenic CG4341 + chr2L_8_920001 chr2L_920001 RAL-142 22 chr2L 922461 922489 chr2L 922544 922605 13 109 6.5 2.5 4.5 2.4 144 chr2L 922461 intergenic CG4341 + chr2L 922533 intergenic CG4341 + chr2L 922605 intergenic CG4341 + chr2L_13_920001 chr2L_920001 RAL-142 23 chr2L 931633 931666 chr2L 931720 931745 11 97 7.5 6.0 6.8 1.4 112 chr2L 931633 intron CG4341 + chr2L 931689 intron CG4341 + chr2L 931745 intron CG4341 + chr2L_11_930001 chr2L_930001 RAL-142 24 chr2L 936514 936541 chr2L 936674 936692 8 158 6.5 0.0 3.2 1.9 178 chr2L 936514 intron CG4341 + chr2L 936603 intron CG4341 + chr2L 936692 intron CG4341 + chr2L_8_935001 chr2L_935001 RAL-142 25 chr2L 953510 953515 chr2L 953585 953613 8 101 4.0 10.5 7.2 1.0 103 chr2L 953510 exon CG4341 + chr2L 953562 intron CG4341 + chr2L 953613 intron CG4341 + chr2L_8_950001 chr2L_950001 RAL-142 26 chr2L 953516 953527 chr2L 953582 953634 9 105 3.0 10.0 6.5 1.2 118 chr2L 953516 intron CG4341 + chr2L 953575 intron CG4341 + chr2L 953634 intron CG4341 + chr2L_9_950001 chr2L_950001 RAL-142 27 chr2L 955990 955994 chr2L 956101 956104 4 115 0.0 14.0 7.0 0.5 114 chr2L 955990 intron CG4341 + chr2L 956047 intron CG4341 + chr2L 956104 intron CG4341 + chr2L_4_955001 chr2L_955001 RAL-142 28 chr2L 964526 964573 chr2L 964645 964690 10 114 3.5 5.5 4.5 1.8 164 chr2L 964526 intergenic not near genes chr2L 964608 intergenic not near genes chr2L 964690 intergenic not near genes chr2L_10_960001 chr2L_960001 RAL-142 29 chr2L 976732 976780 chr2L 976824 976890 30 102 2.5 5.0 3.8 6.2 158 chr2L 976732 intergenic not near genes chr2L 976811 intergenic not near genes chr2L 976890 intergenic not near genes chr2L_30_975001 chr2L_975001 RAL-142 30 chr2L 976862 976910 chr2L 984514 984581 roo 4 7655 4.5 8.0 6.2 0.6 7719 chr2L 976862 intergenic not near genes chr2L 980722 intergenic not near genes chr2L 984581 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-142 31 chr2L 996697 996708 chr2L 1005819 1005838 roo 5 9128 3.0 2.5 2.8 1.3 9141 chr2L 996697 intergenic not near genes chr2L 1001268 intergenic not near genes chr2L 1005838 intergenic not near genes chr2L_5_1000001 chr2L_1000001 RAL-142 32 chr2L 996713 996745 chr2L 1005818 1005875 roo 9 9126 1.0 2.5 1.8 3.2 9162 chr2L 996713 intergenic not near genes chr2L 1001294 intergenic not near genes chr2L 1005875 intergenic not near genes chr2L_9_1000001 chr2L_1000001 RAL-142 33 chr2L 1019423 1019484 chr2L 1019534 1019564 17 103 5.5 4.5 5.0 2.8 141 chr2L 1019423 intron IA-2 - chr2L 1019494 intron IA-2 - chr2L 1019564 intron IA-2 - chr2L_17_1015001 chr2L_1015001 RAL-142 34 chr2L 1042586 1042598 chr2L 1042698 1042710 4 112 1.5 0.0 0.8 2.2 124 chr2L 1042586 intron IA-2 - chr2L 1042648 intron IA-2 - chr2L 1042710 intron IA-2 - chr2L_4_1040001 chr2L_1040001 RAL-142 35 chr2L 1099525 1099560 chr2L 1099765 1099792 9 247 4.5 8.0 6.2 1.2 267 chr2L 1099525 intron CG4629 - chr2L 1099658 intron CG4629 - chr2L 1099792 intron CG4629 - chr2L_9_1095001 chr2L_1095001 RAL-142 36 chr2L 1123392 1123451 chr2L 1123614 1123651 12 216 5.0 3.0 4.0 2.4 259 chr2L 1123392 intron Pino - chr2L 1123522 intron Pino - chr2L 1123651 intron Pino - chr2L_12_1120001 chr2L_1120001 RAL-142 37 chr2L 1126650 1126666 chr2L 1126752 1126767 6 99 11.0 4.0 7.5 0.7 117 chr2L 1126650 intron Pino - chr2L 1126708 intron Pino - chr2L 1126767 intron Pino - chr2L_6_1125001 chr2L_1125001 RAL-142 38 chr2L 1126667 1126702 chr2L 1126751 1126783 17 94 2.5 4.0 3.2 4.0 116 chr2L 1126667 intron Pino - chr2L 1126725 intron Pino - chr2L 1126783 intron Pino - chr2L_17_1125001 chr2L_1125001 RAL-142 39 chr2L 1156874 1156893 chr2L 1156964 1157010 8 121 6.5 5.5 6.0 1.1 136 chr2L 1156874 intron capt - chr2L 1156942 intron capt - chr2L 1157010 intron capt - chr2L_8_1155001 chr2L_1155001 RAL-142 40 chr2L 1220100 1220157 chr2L 1227599 1227649 blood 16 7496 6.0 4.5 5.2 2.6 7549 chr2L 1220100 intron CG42329 + chr2L 1223874 intron CG42329 + chr2L 1227649 intron CG42329 + chr2L_16_1220001 chr2L_1220001 RAL-142 41 chr2L 1321993 1322013 chr2L 1322117 1322137 4 120 0.5 1.0 0.8 2.2 144 chr2L 1321993 intergenic not near genes chr2L 1322065 intergenic not near genes chr2L 1322137 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-142 42 chr2L 1322018 1322035 chr2L 1322116 1322116 4 99 0.5 1.0 0.8 2.2 98 chr2L 1322018 intergenic not near genes chr2L 1322067 intergenic not near genes chr2L 1322116 intergenic not near genes chr2L_4_1320001 chr2L_1320001 RAL-142 43 chr2L 1462944 1462994 chr2L 1463045 1463095 7 106 36.0 31.5 33.8 0.2 151 chr2L 1462944 intergenic not near genes chr2L 1463020 intergenic not near genes chr2L 1463095 intergenic not near genes chr2L_7_1460001 chr2L_1460001 RAL-142 44 chr2L 1464141 1464176 chr2L 1464393 1464408 13 253 5.5 6.5 6.0 1.9 267 chr2L 1464141 intergenic not near genes chr2L 1464274 intergenic not near genes chr2L 1464408 intergenic not near genes chr2L_13_1460001 chr2L_1460001 RAL-142 45 chr2L 1536502 1536524 chr2L 1536627 1536658 11 139 0.5 1.5 1.0 5.5 156 chr2L 1536502 intergenic not near genes chr2L 1536580 intergenic not near genes chr2L 1536658 intergenic not near genes chr2L_11_1535001 chr2L_1535001 RAL-142 46 chr2L 1553249 1553260 chr2L 1553477 1553498 4 234 1.0 0.5 0.8 2.2 249 chr2L 1553249 intergenic not near genes chr2L 1553374 intergenic not near genes chr2L 1553498 intergenic not near genes chr2L_4_1550001 chr2L_1550001 RAL-142 47 chr2L 1554417 1554457 chr2L 1554537 1554582 5 121 2.5 0.5 1.5 2.0 165 chr2L 1554417 intergenic not near genes chr2L 1554500 intergenic not near genes chr2L 1554582 intergenic not near genes chr2L_5_1550001 chr2L_1550001 RAL-142 48 chr2L 1570664 1570679 chr2L 1573571 1573585 F-element 4 2906 8.0 4.5 6.2 0.6 2921 chr2L 1570664 intron haf + chr2L 1572124 intron haf + chr2L 1573585 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-142 49 chr2L 1570684 1570714 chr2L 1573567 1573586 F-element 8 2900 4.5 4.0 4.2 1.5 2902 chr2L 1570684 intron haf + chr2L 1572135 intron haf + chr2L 1573586 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-142 50 chr2L 1678930 1678957 chr2L 1686447 1686475 blood 8 7517 1.0 3.5 2.2 2.5 7545 chr2L 1678930 intron chinmo + chr2L 1682702 intron chinmo + chr2L 1686475 intron chinmo + chr2L_8_1680001 chr2L_1680001 RAL-142 51 chr2L 1711340 1711388 chr2L 1711683 1711718 mdg3 20 342 4.5 7.5 6.0 2.9 378 chr2L 1711340 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711529 3` UTR frtz - chr2L 1711718 3` UTR frtz - chr2L_20_1710001 chr2L_1710001 RAL-142 52 chr2L 1724780 1724832 chr2L 1724897 1724946 21 115 7.0 10.0 8.5 2.2 166 chr2L 1724780 3` UTR Eno - chr2L 1724863 3` UTR Eno - chr2L 1724946 3` UTR Eno - chr2L_21_1720001 chr2L_1720001 RAL-142 53 chr2L 1859790 1859795 chr2L 1860184 1860189 4 394 10.5 5.5 8.0 0.4 399 chr2L 1859790 intron CG31663 - chr2L 1859990 intron CG31663 - chr2L 1860189 intron CG31663 - chr2L_4_1855001 chr2L_1855001 RAL-142 54 chr2L 1859801 1859845 chr2L 1860176 1860224 6 382 2.5 4.0 3.2 1.4 423 chr2L 1859801 intron CG31663 - chr2L 1860012 intron CG31663 - chr2L 1860224 intron CG31663 - chr2L_6_1860001 chr2L_1860001 RAL-142 55 chr2L 1944169 1944213 chr2L 1944283 1944317 11 111 0.0 4.5 2.2 3.4 148 chr2L 1944169 intergenic CG7337 + chr2L 1944243 intergenic CG7337 + chr2L 1944317 intergenic CG7337 + chr2L_11_1940001 chr2L_1940001 RAL-142 56 chr2L 1967838 1967893 chr2L 1968613 1968655 7 770 9.0 3.0 6.0 1.0 817 chr2L 1967838 intron erm - chr2L 1968246 intron erm - chr2L 1968655 intron erm - chr2L_7_1965001 chr2L_1965001 RAL-142 57 chr2L 2002897 2002960 chr2L 2003083 2003119 23 182 2.5 5.5 4.0 4.6 222 chr2L 2002897 exon,intron CG33543 -,CR43464 + chr2L 2003008 intron,intron CG33543 -,CR43464 + chr2L 2003119 intron,intron CG33543 -,CR43464 + chr2L_23_2000001 chr2L_2000001 RAL-142 58 chr2L 2177368 2177410 chr2L 2177463 2177506 11 98 3.0 8.5 5.8 1.6 138 chr2L 2177368 intron aop - chr2L 2177437 intron aop - chr2L 2177506 intron aop - chr2L_11_2175001 chr2L_2175001 RAL-142 59 chr2L 2260790 2260828 chr2L 2260899 2260946 9 108 1.5 3.0 2.2 2.8 156 chr2L 2260790 intergenic not near genes chr2L 2260868 intergenic not near genes chr2L 2260946 intergenic not near genes chr2L_9_2260001 chr2L_2260001 RAL-142 60 chr2L 2271726 2271760 chr2L 2275310 2275362 4 3588 9.0 13.0 11.0 0.3 3636 chr2L 2271726 3` UTR CR43753 - chr2L 2273544 intron CR43753 - chr2L 2275362 intron CR43753 - chr2L_4_2270001 chr2L_2270001 RAL-142 61 chr2L 2282955 2283006 chr2L 2283145 2283172 9 183 5.0 3.0 4.0 1.8 217 chr2L 2282955 intergenic not near genes chr2L 2283064 intergenic not near genes chr2L 2283172 intergenic not near genes chr2L_9_2280001 chr2L_2280001 RAL-142 62 chr2L 2294047 2294074 chr2L 2299245 2299278 copia 7 5209 1.0 4.0 2.5 2.0 5231 chr2L 2294047 intergenic not near genes chr2L 2296662 intergenic not near genes chr2L 2299278 intergenic not near genes chr2L_7_2295001 chr2L_2295001 RAL-142 63 chr2L 2310786 2311083 chr2L 2311075 2311208 12 272 10.5 7.5 9.0 1.2 422 chr2L 2310786 5` UTR CG9967 - chr2L 2310997 intron CG9967 - chr2L 2311208 intron CG9967 - chr2L_12_2310001 chr2L_2310001 RAL-142 64 chr2L 2317565 2317584 chr2L 2317677 2317679 4 108 18.0 5.0 11.5 0.3 114 chr2L 2317565 intron,intron CG9967 -,eys + chr2L 2317622 intron,intron CG9967 -,eys + chr2L 2317679 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-142 65 chr2L 2317594 2317628 chr2L 2317676 2317733 6 91 12.0 5.0 8.5 0.6 139 chr2L 2317594 intron,intron CG9967 -,eys + chr2L 2317664 intron,intron CG9967 -,eys + chr2L 2317733 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-142 66 chr2L 2396192 2396236 chr2L 2396323 2396381 7 143 3.0 0.0 1.5 2.8 189 chr2L 2396192 intron VGlut + chr2L 2396286 intron VGlut + chr2L 2396381 intron VGlut + chr2L_7_2395001 chr2L_2395001 RAL-142 67 chr2L 2427362 2427373 chr2L 2427480 2427483 6 116 9.5 6.0 7.8 0.7 121 chr2L 2427362 3` UTR CR44912 - chr2L 2427422 3` UTR CR44912 - chr2L 2427483 3` UTR CR44912 - chr2L_6_2425001 chr2L_2425001 RAL-142 68 chr2L 2427377 2427401 chr2L 2427473 2427512 12 114 5.0 4.0 4.5 2.2 135 chr2L 2427377 3` UTR CR44912 - chr2L 2427444 3` UTR CR44912 - chr2L 2427512 3` UTR CR44912 - chr2L_12_2425001 chr2L_2425001 RAL-142 69 chr2L 2439247 2439279 chr2L 2439347 2439391 9 89 4.0 5.5 4.8 1.6 144 chr2L 2439247 intron dpp + chr2L 2439319 intron dpp + chr2L 2439391 intron dpp + chr2L_9_2435001 chr2L_2435001 RAL-142 70 chr2L 2500372 2500410 chr2L 2500512 2500531 9 130 0.5 4.0 2.2 2.8 159 chr2L 2500372 intergenic not near genes chr2L 2500452 intergenic not near genes chr2L 2500531 intergenic not near genes chr2L_9_2500001 chr2L_2500001 RAL-142 71 chr2L 2509214 2509236 chr2L 2509314 2509354 9 104 3.5 6.0 4.8 1.6 140 chr2L 2509214 intergenic not near genes chr2L 2509284 intergenic not near genes chr2L 2509354 intergenic not near genes chr2L_9_2505001 chr2L_2505001 RAL-142 72 chr2L 2509245 2509253 chr2L 2509306 2509348 4 80 2.0 4.5 3.2 1.0 103 chr2L 2509245 intergenic not near genes chr2L 2509296 intergenic not near genes chr2L 2509348 intergenic not near genes chr2L_4_2505001 chr2L_2505001 RAL-142 73 chr2L 2565528 2565550 chr2L 2571632 2571653 297 7 6101 5.0 9.0 7.0 0.9 6125 chr2L 2565528 exon Cyp309a2 - chr2L 2568590 intron Cyp309a2 - chr2L 2571653 exon Cyp309a2 - chr2L_7_2565001 chr2L_2565001 RAL-142 74 chr2L 2618017 2618052 chr2L 2618115 2618147 10 106 2.5 4.0 3.2 2.4 130 chr2L 2618017 intergenic not near genes chr2L 2618082 intergenic not near genes chr2L 2618147 intergenic not near genes chr2L_10_2615001 chr2L_2615001 RAL-142 75 chr2L 2620622 2620649 chr2L 2620725 2620772 9 132 1.5 3.5 2.5 2.6 150 chr2L 2620622 3` UTR CG43403 + chr2L 2620697 3` UTR CG43403 + chr2L 2620772 3` UTR CG43403 + chr2L_9_2620001 chr2L_2620001 RAL-142 76 chr2L 2667625 2667655 chr2L 2667723 2667768 4 101 0.5 3.0 1.8 1.4 143 chr2L 2667625 intergenic not near genes chr2L 2667696 intergenic not near genes chr2L 2667768 intergenic not near genes chr2L_4_2665001 chr2L_2665001 RAL-142 77 chr2L 2724376 2724435 chr2L 2724487 2724546 8 105 0.5 3.5 2.0 2.7 170 chr2L 2724376 intergenic not near genes chr2L 2724461 intergenic not near genes chr2L 2724546 intergenic not near genes chr2L_8_2720001 chr2L_2720001 RAL-142 78 chr2L 2772587 2772603 chr2L 2779200 2779219 297 4 6614 5.0 6.5 5.8 0.6 6632 chr2L 2772587 3` UTR Syt1 - chr2L 2775903 intron Syt1 - chr2L 2779219 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-142 79 chr2L 2772605 2772628 chr2L 2779196 2779215 297 5 6595 2.0 6.5 4.2 1.0 6610 chr2L 2772605 3` UTR Syt1 - chr2L 2775910 intron Syt1 - chr2L 2779215 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-142 80 chr2L 2826519 2826576 chr2L 2826632 2826696 10 102 0.0 2.0 1.0 5.0 177 chr2L 2826519 intron Duox - chr2L 2826608 intron Duox - chr2L 2826696 intron Duox - chr2L_10_2825001 chr2L_2825001 RAL-142 81 chr2L 2873440 2873463 chr2L 2873549 2873566 4 103 0.0 8.5 4.2 0.8 126 chr2L 2873440 intron CG31694 - chr2L 2873503 intron CG31694 - chr2L 2873566 intron CG31694 - chr2L_4_2870001 chr2L_2870001 RAL-142 82 chr2L 2925793 2925844 chr2L 2925921 2925937 9 116 1.0 2.5 1.8 3.2 144 chr2L 2925793 intron lilli + chr2L 2925865 intron lilli + chr2L 2925937 intron lilli + chr2L_9_2925001 chr2L_2925001 RAL-142 83 chr2L 2932427 2932455 chr2L 2932905 2932916 7 477 5.0 0.0 2.5 2.0 489 chr2L 2932427 intron lilli + chr2L 2932672 intron lilli + chr2L 2932916 intron lilli + chr2L_7_2930001 chr2L_2930001 RAL-142 84 chr2L 2937394 2937445 chr2L 2937505 2937557 7 110 2.5 0.5 1.5 2.8 163 chr2L 2937394 intron lilli + chr2L 2937476 intron lilli + chr2L 2937557 intron lilli + chr2L_7_2935001 chr2L_2935001 RAL-142 85 chr2L 3004568 3004587 chr2L 3005582 3005605 4 1020 1.5 6.5 4.0 0.8 1037 chr2L 3004568 intron CG17265 + chr2L 3005086 intron CG17265 + chr2L 3005605 intron CG17265 + chr2L_4_3005001 chr2L_3005001 RAL-142 86 chr2L 3073003 3073063 chr2L 3078241 3078253 copia 14 5231 3.0 2.0 2.5 4.0 5250 chr2L 3073003 intron toc - chr2L 3075628 intron toc - chr2L 3078253 intron toc - chr2L_14_3075001 chr2L_3075001 RAL-142 87 chr2L 3108850 3108895 chr2L 3108945 3109006 6 106 1.0 2.5 1.8 2.1 156 chr2L 3108850 exon toc - chr2L 3108928 intron toc - chr2L 3109006 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-142 88 chr2L 3112450 3112498 chr2L 3112564 3112566 7 100 1.0 0.0 0.5 4.7 116 chr2L 3112450 intron toc - chr2L 3112508 intron toc - chr2L 3112566 intron toc - chr2L_7_3110001 chr2L_3110001 RAL-142 89 chr2L 3251473 3251517 chr2L 3259062 3259116 springer 7 7593 1.0 3.0 2.0 2.3 7643 chr2L 3251473 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259116 intergenic not near genes chr2L_7_3255001 chr2L_3255001 RAL-142 90 chr2L 3267780 3267834 chr2L 3268030 3268094 8 252 1.0 0.5 0.8 4.4 314 chr2L 3267780 intergenic CR44484 + chr2L 3267937 intergenic CR44484 + chr2L 3268094 intergenic CR44484 + chr2L_8_3265001 chr2L_3265001 RAL-142 91 chr2L 3291252 3291269 chr2L 3291337 3291381 4 98 1.5 5.0 3.2 1.0 129 chr2L 3291252 3` UTR CG9664 - chr2L 3291316 3` UTR CG9664 - chr2L 3291381 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-142 92 chr2L 3314662 3314685 chr2L 3314774 3314793 7 110 11.5 5.0 8.2 0.8 131 chr2L 3314662 intron CG3277 + chr2L 3314728 intron CG3277 + chr2L 3314793 intron CG3277 + chr2L_7_3310001 chr2L_3310001 RAL-142 93 chr2L 3314688 3314728 chr2L 3314773 3314840 15 102 5.0 5.5 5.2 2.4 152 chr2L 3314688 intron CG3277 + chr2L 3314764 intron CG3277 + chr2L 3314840 intron CG3277 + chr2L_15_3310001 chr2L_3310001 RAL-142 94 chr2L 3582848 3582908 chr2L 3582960 3583000 6 98 0.0 2.5 1.2 2.7 152 chr2L 3582848 intergenic not near genes chr2L 3582924 intergenic not near genes chr2L 3583000 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-142 95 chr2L 3632343 3632383 chr2L 3632487 3632537 11 147 3.0 4.0 3.5 2.4 194 chr2L 3632343 intron for - chr2L 3632440 intron for - chr2L 3632537 intron for - chr2L_11_3630001 chr2L_3630001 RAL-142 96 chr2L 3667978 3668062 chr2L 3668114 3668173 5 117 0.0 3.0 1.5 2.0 195 chr2L 3667978 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668076 intron,3` UTR CG34340 +,Sfp24Ba - chr2L 3668173 intron,exon CG34340 +,Sfp24Ba - chr2L_5_3665001 chr2L_3665001 RAL-142 97 chr2L 3733899 3733949 chr2L 3734038 3734068 6 129 0.5 2.5 1.5 2.4 169 chr2L 3733899 intron CG10019 + chr2L 3733984 intron CG10019 + chr2L 3734068 intron CG10019 + chr2L_6_3730001 chr2L_3730001 RAL-142 98 chr2L 3784793 3784964 chr2L 3785672 3785804 4 876 23.0 7.5 15.2 0.2 1011 chr2L 3784793 intergenic CG31960 + chr2L 3785298 exon CG31960 + chr2L 3785804 5` UTR CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-142 99 chr2L 3784703 3784738 chr2L 3785604 3785639 4 903 25.0 8.0 16.5 0.2 936 chr2L 3784703 intergenic CG31960 + chr2L 3785171 exon CG31960 + chr2L 3785639 intergenic CG31960 +,CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-142 100 chr2L 3891877 3891921 chr2L 3891976 3892025 9 102 3.0 2.0 2.5 2.6 148 chr2L 3891877 intron capu - chr2L 3891951 intron capu - chr2L 3892025 intron capu - chr2L_9_3890001 chr2L_3890001 RAL-142 101 chr2L 3898259 3898305 chr2L 3898379 3898405 4 110 0.0 3.5 1.8 1.4 146 chr2L 3898259 intron capu - chr2L 3898332 intron capu - chr2L 3898405 intron capu - chr2L_4_3895001 chr2L_3895001 RAL-142 102 chr2L 3950063 3950098 chr2L 3950158 3950209 4 106 1.0 0.5 0.8 2.2 146 chr2L 3950063 intron fred - chr2L 3950136 intron fred - chr2L 3950209 intron fred - chr2L_4_3950001 chr2L_3950001 RAL-142 103 chr2L 4001626 4001687 chr2L 4001759 4001820 9 129 2.5 3.0 2.8 2.4 194 chr2L 4001626 intergenic CR45344 + chr2L 4001723 intergenic CR45344 + chr2L 4001820 intergenic CR45344 + chr2L_9_4000001 chr2L_4000001 RAL-142 104 chr2L 4166377 4166406 chr2L 4166473 4166524 7 111 2.5 6.0 4.2 1.3 147 chr2L 4166377 intergenic Or24a - chr2L 4166450 intergenic Or24a - chr2L 4166524 intergenic Or24a - chr2L_7_4165001 chr2L_4165001 RAL-142 105 chr2L 4181295 4181302 chr2L 4183913 4183944 Burdock 5 2632 7.0 0.0 3.5 1.1 2649 chr2L 4181295 intergenic not near genes chr2L 4182620 intergenic not near genes chr2L 4183944 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-142 106 chr2L 4275093 4275104 chr2L 4275155 4275202 6 100 0.5 7.0 3.8 1.2 109 chr2L 4275093 intergenic not near genes chr2L 4275148 intergenic not near genes chr2L 4275202 intergenic not near genes chr2L_6_4275001 chr2L_4275001 RAL-142 107 chr2L 4285698 4285738 chr2L 4285790 4285814 10 91 4.0 3.5 3.8 2.1 116 chr2L 4285698 intron tutl + chr2L 4285756 intron tutl + chr2L 4285814 intron tutl + chr2L_10_4285001 chr2L_4285001 RAL-142 108 chr2L 4293967 4294003 chr2L 4294094 4294130 6 120 8.5 7.0 7.8 0.7 163 chr2L 4293967 intron tutl + chr2L 4294048 intron tutl + chr2L 4294130 intron tutl + chr2L_6_4290001 chr2L_4290001 RAL-142 109 chr2L 4351443 4351477 chr2L 4351554 4351588 8 104 9.0 5.0 7.0 1.0 145 chr2L 4351443 5` UTR CR44700 + chr2L 4351516 intergenic CR44700 + chr2L 4351588 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-142 110 chr2L 4351478 4351501 chr2L 4351548 4351612 11 94 4.0 4.5 4.2 2.1 134 chr2L 4351478 intergenic CR44700 + chr2L 4351545 intergenic CR44700 + chr2L 4351612 intergenic CR44700 + chr2L_11_4350001 chr2L_4350001 RAL-142 111 chr2L 4438611 4438616 chr2L 4439043 4439067 4 449 0.5 3.0 1.8 1.4 456 chr2L 4438611 intron CG15431 - chr2L 4438839 intron CG15431 - chr2L 4439067 intron CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-142 112 chr2L 4470832 4470886 chr2L 4470942 4470980 16 106 2.5 1.5 2.0 5.3 148 chr2L 4470832 intron ine - chr2L 4470906 intron ine - chr2L 4470980 intron ine - chr2L_16_4470001 chr2L_4470001 RAL-142 113 chr2L 4601673 4601733 chr2L 4609149 4609166 mdg1 14 7469 2.5 2.0 2.2 4.4 7493 chr2L 4601673 intron dp - chr2L 4605420 intron dp - chr2L 4609166 intron dp - chr2L_14_4605001 chr2L_4605001 RAL-142 114 chr2L 4656523 4656572 chr2L 4656621 4656673 5 104 1.5 4.0 2.8 1.3 150 chr2L 4656523 intergenic not near genes chr2L 4656598 intergenic not near genes chr2L 4656673 intergenic not near genes chr2L_5_4655001 chr2L_4655001 RAL-142 115 chr2L 4661823 4661850 chr2L 4669427 4669465 opus 6 7613 2.5 2.5 2.5 1.7 7642 chr2L 4661823 intergenic not near genes chr2L 4665644 intergenic not near genes chr2L 4669465 intergenic not near genes chr2L_6_4665001 chr2L_4665001 RAL-142 116 chr2L 4693373 4693418 chr2L 4693575 4693620 13 202 3.0 3.5 3.2 3.1 247 chr2L 4693373 intergenic not near genes chr2L 4693496 intergenic not near genes chr2L 4693620 intergenic not near genes chr2L_13_4690001 chr2L_4690001 RAL-142 117 chr2L 4793274 4793322 chr2L 4793604 4793647 10 326 3.5 1.5 2.5 2.9 373 chr2L 4793274 intron CG15630 - chr2L 4793460 intron CG15630 - chr2L 4793647 exon CG15630 - chr2L_10_4790001 chr2L_4790001 RAL-142 118 chr2L 4819461 4819519 chr2L 4819619 4819638 13 144 4.5 6.5 5.5 2.0 177 chr2L 4819461 intergenic not near genes chr2L 4819550 intergenic not near genes chr2L 4819638 intergenic not near genes chr2L_13_4815001 chr2L_4815001 RAL-142 119 chr2L 4918153 4918197 chr2L 4923250 4923285 jockey 9 5103 3.5 5.0 4.2 1.7 5132 chr2L 4918153 intron hoe1 - chr2L 4920719 intron hoe1 - chr2L 4923285 intron hoe1 - chr2L_9_4920001 chr2L_4920001 RAL-142 120 chr2L 5040656 5040708 chr2L 5040787 5040839 26 130 7.0 11.0 9.0 2.6 183 chr2L 5040656 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040748 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040839 3` UTR CG31650 - chr2L_26_5040001 chr2L_5040001 RAL-142 121 chr2L 5117271 5117323 chr2L 5117388 5117440 10 110 2.5 4.0 3.2 2.4 169 chr2L 5117271 intron Msp300 + chr2L 5117356 intron Msp300 + chr2L 5117440 intron Msp300 + chr2L_10_5115001 chr2L_5115001 RAL-142 122 chr2L 5120939 5120999 chr2L 5121068 5121093 9 116 6.0 2.0 4.0 1.8 154 chr2L 5120939 intron Msp300 + chr2L 5121016 intron Msp300 + chr2L 5121093 intron Msp300 + chr2L_9_5120001 chr2L_5120001 RAL-142 123 chr2L 5242936 5242936 chr2L 16217660 16217660 4 10974724 9.0 7.0 8.0 0.4 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_4_10730001 chr2L_10730001 RAL-142 124 chr2L 5342750 5342792 chr2L 5345153 5345207 Doc 15 2409 6.0 4.5 5.2 2.4 2457 chr2L 5342750 intergenic not near genes chr2L 5343978 intergenic not near genes chr2L 5345207 intergenic not near genes chr2L_15_5340001 chr2L_5340001 RAL-142 125 chr2L 5488018 5488035 chr2L 5488133 5488150 5 115 2.5 0.0 1.2 2.3 132 chr2L 5488018 intergenic not near genes chr2L 5488084 intergenic not near genes chr2L 5488150 intergenic not near genes chr2L_5_5485001 chr2L_5485001 RAL-142 126 chr2L 5500030 5500069 chr2L 5500147 5500174 5 114 1.5 4.0 2.8 1.3 144 chr2L 5500030 intergenic not near genes chr2L 5500102 intergenic not near genes chr2L 5500174 intergenic not near genes chr2L_5_5500001 chr2L_5500001 RAL-142 127 chr2L 5563651 5563689 chr2L 5563770 5563808 17 116 11.0 6.0 8.5 1.8 157 chr2L 5563651 intergenic GluRIIB + chr2L 5563730 intergenic GluRIIB + chr2L 5563808 intergenic GluRIIB + chr2L_17_5560001 chr2L_5560001 RAL-142 128 chr2L 5568928 5568955 chr2L 5569163 5569221 7 260 5.0 4.5 4.8 1.2 293 chr2L 5568928 intergenic not near genes chr2L 5569074 intergenic not near genes chr2L 5569221 intergenic not near genes chr2L_7_5565001 chr2L_5565001 RAL-142 129 chr2L 5676879 5676924 chr2L 5676987 5677055 16 124 2.5 4.0 3.2 3.8 176 chr2L 5676879 intergenic not near genes chr2L 5676967 intergenic not near genes chr2L 5677055 intergenic not near genes chr2L_16_5675001 chr2L_5675001 RAL-142 130 chr2L 5720246 5720293 chr2L 5720348 5720397 20 106 5.0 4.5 4.8 3.4 151 chr2L 5720246 intron CG11149 - chr2L 5720322 intron CG11149 - chr2L 5720397 intron CG11149 - chr2L_20_5720001 chr2L_5720001 RAL-142 131 chr2L 5764869 5764929 chr2L 5765011 5765070 5 140 0.0 2.5 1.2 2.3 201 chr2L 5764869 intron obst-E - chr2L 5764970 intron obst-E - chr2L 5765070 intron obst-E - chr2L_5_5760001 chr2L_5760001 RAL-142 132 chr2L 5814658 5814710 chr2L 5814775 5814827 11 117 3.5 0.5 2.0 3.7 169 chr2L 5814658 intergenic not near genes chr2L 5814742 intergenic not near genes chr2L 5814827 intergenic not near genes chr2L_11_5810001 chr2L_5810001 RAL-142 133 chr2L 5827694 5827732 chr2L 5836721 5836762 roo 8 9030 1.5 2.5 2.0 2.7 9068 chr2L 5827694 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836762 intron TrissinR + chr2L_8_5830001 chr2L_5830001 RAL-142 134 chr2L 5887574 5887631 chr2L 5887690 5887742 13 112 4.0 7.0 5.5 2.0 168 chr2L 5887574 3` UTR CR44577 - chr2L 5887658 3` UTR CR44577 - chr2L 5887742 3` UTR CR44577 - chr2L_13_5885001 chr2L_5885001 RAL-142 135 chr2L 5897581 5897626 chr2L 5897678 5897693 13 97 4.5 3.0 3.8 2.7 112 chr2L 5897581 intergenic not near genes chr2L 5897637 intergenic not near genes chr2L 5897693 intergenic not near genes chr2L_13_5895001 chr2L_5895001 RAL-142 136 chr2L 5904427 5904475 chr2L 5904541 5904568 24 109 6.0 0.0 3.0 6.0 141 chr2L 5904427 exon CG9021 - chr2L 5904498 intron CG9021 - chr2L 5904568 intron CG9021 - chr2L_24_5900001 chr2L_5900001 RAL-142 137 chr2L 5938214 5938242 chr2L 5938339 5938365 15 134 4.0 6.0 5.0 2.5 151 chr2L 5938214 3` UTR dsf + chr2L 5938290 3` UTR dsf + chr2L 5938365 3` UTR dsf + chr2L_15_5935001 chr2L_5935001 RAL-142 138 chr2L 5944552 5944573 chr2L 5948963 5948982 4 4410 43.5 41.5 42.5 0.1 4430 chr2L 5944552 intron Gpdh + chr2L 5946767 intron Gpdh + chr2L 5948982 intergenic Gpdh +,CG9044 + chr2L_4_5945001 chr2L_5945001 RAL-142 139 chr2L 5944551 5944587 chr2L 5948983 5949000 5 4419 46.5 36.0 41.2 0.1 4449 chr2L 5944551 intron Gpdh + chr2L 5946776 intron Gpdh + chr2L 5949000 intergenic Gpdh +,CG9044 + chr2L_5_5945001 chr2L_5945001 RAL-142 140 chr2L 5989002 5989057 chr2L 5989113 5989165 15 102 7.0 0.0 3.5 3.3 163 chr2L 5989002 intergenic ifc +,lid - chr2L 5989084 intergenic ifc +,lid - chr2L 5989165 intergenic lid -,ifc + chr2L_15_5985001 chr2L_5985001 RAL-142 141 chr2L 6002407 6002460 chr2L 6002528 6002581 17 118 6.5 9.0 7.8 1.9 174 chr2L 6002407 3` UTR Tsp26A + chr2L 6002494 3` UTR Tsp26A + chr2L 6002581 3` UTR Tsp26A + chr2L_17_6000001 chr2L_6000001 RAL-142 142 chr2L 6007069 6007114 chr2L 6007174 6007206 4 103 4.0 1.5 2.8 1.1 137 chr2L 6007069 intergenic Gal -,CG9098 - chr2L 6007138 intergenic CG9098 -,Gal - chr2L 6007206 intergenic CG9098 -,Gal - chr2L_4_6005001 chr2L_6005001 RAL-142 143 chr2L 6037004 6037060 chr2L 6037117 6037158 24 111 5.0 8.0 6.5 3.2 154 chr2L 6037004 5` UTR,3` UTR mtm -,CG9117 - chr2L 6037081 3` UTR CG9117 - chr2L 6037158 exon CG9117 - chr2L_24_6035001 chr2L_6035001 RAL-142 144 chr2L 6136519 6136579 chr2L 6136651 6136701 6 130 3.5 2.0 2.8 1.6 182 chr2L 6136519 intergenic not near genes chr2L 6136610 intergenic not near genes chr2L 6136701 intergenic not near genes chr2L_6_6135001 chr2L_6135001 RAL-142 145 chr2L 6157272 6157294 chr2L 6157396 6157410 4 122 2.0 6.0 4.0 0.8 138 chr2L 6157272 intergenic not near genes chr2L 6157341 intergenic not near genes chr2L 6157410 intergenic not near genes chr2L_4_6155001 chr2L_6155001 RAL-142 146 chr2L 6185414 6185472 chr2L 6185527 6185585 15 102 5.0 17.0 11.0 1.2 171 chr2L 6185414 intron CG34380 + chr2L 6185500 intron CG34380 + chr2L 6185585 intron CG34380 + chr2L_15_6185001 chr2L_6185001 RAL-142 147 chr2L 6242946 6242986 chr2L 6243079 6243119 12 129 5.0 3.0 4.0 2.4 173 chr2L 6242946 intergenic not near genes chr2L 6243032 intergenic not near genes chr2L 6243119 intergenic not near genes chr2L_12_6240001 chr2L_6240001 RAL-142 148 chr2L 6279608 6279644 chr2L 6279721 6279757 INE-1 18 110 8.5 1.0 4.8 3.1 149 chr2L 6279608 intron Ddr + chr2L 6279682 intron Ddr + chr2L 6279757 intron Ddr + chr2L_18_6275001 chr2L_6275001 RAL-142 149 chr2L 6343666 6343707 chr2L 6343945 6343987 22 284 54.0 52.5 53.2 0.4 321 chr2L 6343666 intron Cpr + chr2L 6343826 intron Cpr + chr2L 6343987 intron Cpr + chr2L_22_6340001 chr2L_6340001 RAL-142 150 chr2L 6349058 6349074 chr2L 6349162 6349166 4 106 6.5 7.0 6.8 0.5 108 chr2L 6349058 intergenic CG9498 - chr2L 6349112 intergenic CG9498 - chr2L 6349166 intergenic CG9498 - chr2L_4_6345001 chr2L_6345001 RAL-142 151 chr2L 6363145 6363174 chr2L 6366077 6366110 Burdock 11 2942 4.5 2.5 3.5 2.4 2965 chr2L 6363145 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366110 intergenic not near genes chr2L_11_6360001 chr2L_6360001 RAL-142 152 chr2L 6387877 6387922 chr2L 6387986 6388048 21 121 9.5 6.5 8.0 2.3 171 chr2L 6387877 intron CG42368 - chr2L 6387962 intron CG42368 - chr2L 6388048 intron CG42368 - chr2L_21_6385001 chr2L_6385001 RAL-142 153 chr2L 6426826 6426889 chr2L 6445121 6445149 roo 18 18285 6.5 8.0 7.2 2.2 18323 chr2L 6426826 3` UTR CG9527 - chr2L 6435988 intron CG9527 - chr2L 6445149 exon CG9527 - chr2L_18_6435001 chr2L_6435001 RAL-142 154 chr2L 6470638 6470648 chr2L 6470766 6470776 4 128 16.0 1.5 8.8 0.4 138 chr2L 6470638 intron mmy - chr2L 6470707 intron mmy - chr2L 6470776 intron mmy - chr2L_4_6470001 chr2L_6470001 RAL-142 155 chr2L 6470651 6470701 chr2L 6470759 6470805 22 111 4.0 1.0 2.5 6.3 154 chr2L 6470651 intron mmy - chr2L 6470728 intron mmy - chr2L 6470805 intron mmy - chr2L_22_6470001 chr2L_6470001 RAL-142 156 chr2L 6514821 6514867 chr2L 6514937 6514978 9 113 2.5 7.5 5.0 1.5 157 chr2L 6514821 intron CG31637 + chr2L 6514900 intron CG31637 + chr2L 6514978 intron CG31637 + chr2L_9_6510001 chr2L_6510001 RAL-142 157 chr2L 6527222 6527236 chr2L 6527336 6527348 7 114 3.5 5.5 4.5 1.3 126 chr2L 6527222 intergenic eya -,CG31637 + chr2L 6527285 intergenic eya -,CG31637 + chr2L 6527348 intergenic eya -,CG31637 + chr2L_7_6525001 chr2L_6525001 RAL-142 158 chr2L 6544363 6544395 chr2L 6544472 6544501 11 117 4.5 7.5 6.0 1.6 138 chr2L 6544363 intron eya - chr2L 6544432 intron eya - chr2L 6544501 intron eya - chr2L_11_6540001 chr2L_6540001 RAL-142 159 chr2L 6640897 6640939 chr2L 6641002 6641063 9 113 3.0 3.0 3.0 2.2 166 chr2L 6640897 exon CG31635 - chr2L 6640980 intron CG31635 - chr2L 6641063 intron CG31635 - chr2L_9_6640001 chr2L_6640001 RAL-142 160 chr2L 6655513 6655544 chr2L 6655890 6655916 8 381 5.0 7.5 6.2 1.1 403 chr2L 6655513 exon CG31633 - chr2L 6655714 exon CG31633 - chr2L 6655916 exon CG31633 - chr2L_8_6655001 chr2L_6655001 RAL-142 161 chr2L 6680767 6680829 chr2L 6680908 6680965 26 138 6.5 7.5 7.0 3.2 198 chr2L 6680767 intron Nhe3 - chr2L 6680866 intron Nhe3 - chr2L 6680965 exon Nhe3 - chr2L_26_6680001 chr2L_6680001 RAL-142 162 chr2L 6701353 6701369 chr2L 6701454 6701482 7 111 11.0 3.5 7.2 0.9 129 chr2L 6701353 intron Tsp - chr2L 6701418 intron Tsp - chr2L 6701482 intron Tsp - chr2L_7_6700001 chr2L_6700001 RAL-142 163 chr2L 6701370 6701399 chr2L 6701453 6701508 6 102 5.0 3.5 4.2 1.2 138 chr2L 6701370 intron Tsp - chr2L 6701439 intron Tsp - chr2L 6701508 intron Tsp - chr2L_6_6700001 chr2L_6700001 RAL-142 164 chr2L 6724419 6724439 chr2L 6724532 6724554 5 112 24.0 7.5 15.8 0.3 135 chr2L 6724419 intron Liprin-alpha + chr2L 6724486 intron Liprin-alpha + chr2L 6724554 intron Liprin-alpha + chr2L_5_6720001 chr2L_6720001 RAL-142 165 chr2L 6724442 6724471 chr2L 6724525 6724565 7 96 18.0 6.0 12.0 0.5 123 chr2L 6724442 intron Liprin-alpha + chr2L 6724504 intron Liprin-alpha + chr2L 6724565 intron Liprin-alpha + chr2L_7_6720001 chr2L_6720001 RAL-142 166 chr2L 6771966 6772020 chr2L 6772072 6772074 8 87 5.0 3.0 4.0 1.6 108 chr2L 6771966 intron CG11321 - chr2L 6772020 intron CG11321 - chr2L 6772074 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-142 167 chr2L 6782138 6782163 chr2L 6782238 6782241 5 103 0.5 9.0 4.8 0.9 103 chr2L 6782138 intron nrv1 - chr2L 6782190 intron nrv1 - chr2L 6782241 intron nrv1 - chr2L_5_6780001 chr2L_6780001 RAL-142 168 chr2L 6793810 6793846 chr2L 6793967 6793980 6 151 3.0 1.5 2.2 1.9 170 chr2L 6793810 intron nrv2 - chr2L 6793895 intron nrv2 - chr2L 6793980 intron nrv2 - chr2L_6_6790001 chr2L_6790001 RAL-142 169 chr2L 6836466 6836532 chr2L 6836583 6836649 27 113 5.5 4.5 5.0 4.5 183 chr2L 6836466 intron sens-2 + chr2L 6836558 intron sens-2 + chr2L 6836649 intron sens-2 + chr2L_27_6835001 chr2L_6835001 RAL-142 170 chr2L 6876764 6876803 chr2L 6882965 6882974 diver 4 6188 8.0 4.5 6.2 0.6 6210 chr2L 6876764 intron Nlg2 + chr2L 6879869 intron Nlg2 + chr2L 6882974 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-142 171 chr2L 6950130 6950140 chr2L 6950370 6950380 7 239 22.5 13.0 17.8 0.4 250 chr2L 6950130 5` UTR Gas41 - chr2L 6950255 intergenic Gas41 -,SA + chr2L 6950380 intergenic SA +,Gas41 - chr2L_7_6950001 chr2L_6950001 RAL-142 172 chr2L 6950146 6950191 chr2L 6950365 6950411 22 223 9.5 11.0 10.2 2.0 265 chr2L 6950146 5` UTR Gas41 - chr2L 6950278 intergenic Gas41 -,SA + chr2L 6950411 intergenic SA +,Gas41 - chr2L_22_6950001 chr2L_6950001 RAL-142 173 chr2L 7005199 7005248 chr2L 7005325 7005379 7 125 2.0 1.0 1.5 2.8 180 chr2L 7005199 intron uif - chr2L 7005289 intron uif - chr2L 7005379 intron uif - chr2L_7_7005001 chr2L_7005001 RAL-142 174 chr2L 7042044 7042087 chr2L 7042150 7042210 9 110 4.5 3.5 4.0 1.8 166 chr2L 7042044 intron milt + chr2L 7042127 intron milt + chr2L 7042210 intron milt + chr2L_9_7040001 chr2L_7040001 RAL-142 175 chr2L 7081683 7081724 chr2L 7081793 7081823 8 110 3.5 7.5 5.5 1.2 140 chr2L 7081683 intron Pvf2 - chr2L 7081753 intron Pvf2 - chr2L 7081823 intron Pvf2 - chr2L_8_7080001 chr2L_7080001 RAL-142 176 chr2L 7111743 7111789 chr2L 7111846 7111909 5 116 1.0 4.5 2.8 1.3 166 chr2L 7111743 intron Pvf3 - chr2L 7111826 intron Pvf3 - chr2L 7111909 intron Pvf3 - chr2L_5_7110001 chr2L_7110001 RAL-142 177 chr2L 7114977 7115028 chr2L 7115139 7115186 12 156 0.0 6.5 3.2 2.9 209 chr2L 7114977 intron Pvf3 - chr2L 7115082 intron Pvf3 - chr2L 7115186 intron Pvf3 - chr2L_12_7115001 chr2L_7115001 RAL-142 178 chr2L 7125759 7125792 chr2L 7125909 7125943 4 147 2.0 2.0 2.0 1.3 184 chr2L 7125759 intron Pvf3 - chr2L 7125851 intron Pvf3 - chr2L 7125943 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-142 179 chr2L 7126345 7126396 chr2L 7126597 7126635 5 248 1.0 3.5 2.2 1.6 290 chr2L 7126345 intron Pvf3 - chr2L 7126490 intron Pvf3 - chr2L 7126635 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-142 180 chr2L 7149967 7149984 chr2L 7150092 7150119 5 130 3.5 1.0 2.2 1.6 152 chr2L 7149967 intron Pvf3 - chr2L 7150043 intron Pvf3 - chr2L 7150119 intron Pvf3 - chr2L_5_7150001 chr2L_7150001 RAL-142 181 chr2L 7225216 7225225 chr2L 7225335 7225344 4 119 15.0 6.0 10.5 0.3 128 chr2L 7225216 intron Ndae1 - chr2L 7225280 intron Ndae1 - chr2L 7225344 intron Ndae1 - chr2L_4_7225001 chr2L_7225001 RAL-142 182 chr2L 7225230 7225271 chr2L 7225331 7225386 16 114 6.0 5.5 5.8 2.4 156 chr2L 7225230 intron Ndae1 - chr2L 7225308 intron Ndae1 - chr2L 7225386 intron Ndae1 - chr2L_16_7225001 chr2L_7225001 RAL-142 183 chr2L 7284578 7284623 chr2L 7284699 7284745 7 120 4.5 1.0 2.8 1.8 167 chr2L 7284578 intergenic not near genes chr2L 7284662 intergenic not near genes chr2L 7284745 intergenic not near genes chr2L_7_7280001 chr2L_7280001 RAL-142 184 chr2L 7335187 7335221 chr2L 7335304 7335352 5 125 6.0 4.0 5.0 0.8 165 chr2L 7335187 intron Wnt6 + chr2L 7335270 intron Wnt6 + chr2L 7335352 intron Wnt6 + chr2L_5_7335001 chr2L_7335001 RAL-142 185 chr2L 7336983 7337028 chr2L 7337087 7337103 11 101 1.5 7.5 4.5 2.0 120 chr2L 7336983 intron Wnt6 + chr2L 7337043 intron Wnt6 + chr2L 7337103 intron Wnt6 + chr2L_11_7335001 chr2L_7335001 RAL-142 186 chr2L 7343306 7343359 chr2L 7350445 7350470 roo 15 7135 3.0 4.5 3.8 3.1 7164 chr2L 7343306 intron Wnt6 + chr2L 7346888 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_15_7345001 chr2L_7345001 RAL-142 187 chr2L 7363512 7363554 chr2L 7363624 7363652 11 110 3.0 3.0 3.0 2.8 140 chr2L 7363512 5` UTR Wnt10 + chr2L 7363582 5` UTR Wnt10 + chr2L 7363652 5` UTR Wnt10 + chr2L_11_7360001 chr2L_7360001 RAL-142 188 chr2L 7377851 7377901 chr2L 7377982 7378033 4 129 0.5 6.5 3.5 0.9 182 chr2L 7377851 5` UTR ninaC + chr2L 7377942 intron ninaC + chr2L 7378033 intron ninaC + chr2L_4_7375001 chr2L_7375001 RAL-142 189 chr2L 7399272 7399335 chr2L 7399680 7399743 10 401 0.0 2.5 1.2 4.5 471 chr2L 7399272 intergenic not near genes chr2L 7399508 intergenic not near genes chr2L 7399743 intergenic not near genes chr2L_10_7395001 chr2L_7395001 RAL-142 190 chr2L 7459164 7459169 chr2L 7459354 7459355 5 193 1.5 0.0 0.8 2.8 191 chr2L 7459164 intron Gr28b - chr2L 7459260 intron Gr28b - chr2L 7459355 intron Gr28b - chr2L_5_7455001 chr2L_7455001 RAL-142 191 chr2L 7461027 7461051 chr2L 7461300 7461338 4 282 1.0 1.5 1.2 1.8 311 chr2L 7461027 intron Gr28b - chr2L 7461182 intron Gr28b - chr2L 7461338 intron Gr28b - chr2L_4_7460001 chr2L_7460001 RAL-142 192 chr2L 7502719 7502766 chr2L 7502814 7502865 11 96 5.0 5.5 5.2 1.8 146 chr2L 7502719 intron RapGAP1 - chr2L 7502792 intron RapGAP1 - chr2L 7502865 intron RapGAP1 - chr2L_11_7500001 chr2L_7500001 RAL-142 193 chr2L 7579171 7579225 chr2L 7579394 7579451 BS 8 223 2.5 3.0 2.8 2.1 280 chr2L 7579171 intergenic RapGAP1 - chr2L 7579311 intergenic RapGAP1 - chr2L 7579451 intergenic RapGAP1 - chr2L_8_7575001 chr2L_7575001 RAL-142 194 chr2L 7759206 7759249 chr2L 7759321 7759360 7 114 1.5 2.0 1.8 2.5 154 chr2L 7759206 intron CG7196 + chr2L 7759283 intron CG7196 + chr2L 7759360 intron CG7196 + chr2L_7_7755001 chr2L_7755001 RAL-142 195 chr2L 7867541 7867547 chr2L 7867669 7867676 5 128 11.5 5.0 8.2 0.5 135 chr2L 7867541 intron Proc - chr2L 7867608 intron Proc - chr2L 7867676 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-142 196 chr2L 7867549 7867599 chr2L 7867667 7867723 13 124 3.5 5.0 4.2 2.5 174 chr2L 7867549 intron Proc - chr2L 7867636 intron Proc - chr2L 7867723 intron Proc - chr2L_13_7865001 chr2L_7865001 RAL-142 197 chr2L 7922720 7922774 chr2L 7922822 7922885 19 110 4.0 6.0 5.0 3.2 165 chr2L 7922720 intron Snoo - chr2L 7922802 intron Snoo - chr2L 7922885 intron Snoo - chr2L_19_7920001 chr2L_7920001 RAL-142 198 chr2L 7938063 7938114 chr2L 7938166 7938213 15 99 3.0 2.5 2.8 3.9 150 chr2L 7938063 intron Snoo - chr2L 7938138 intron Snoo - chr2L 7938213 intron Snoo - chr2L_15_7935001 chr2L_7935001 RAL-142 199 chr2L 7959016 7959028 chr2L 7960462 7960471 pogo 4 1445 7.5 1.5 4.5 0.7 1455 chr2L 7959016 intron Snoo - chr2L 7959744 intron Snoo - chr2L 7960471 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-142 200 chr2L 7959034 7959073 chr2L 7960459 7960513 pogo 4 1428 5.0 1.5 3.2 1.0 1479 chr2L 7959034 intron Snoo - chr2L 7959774 intron Snoo - chr2L 7960513 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-142 201 chr2L 7974890 7974919 chr2L 7974989 7975015 7 101 1.5 9.5 5.5 1.1 125 chr2L 7974890 intron Snoo - chr2L 7974952 intron Snoo - chr2L 7975015 intron Snoo - chr2L_7_7970001 chr2L_7970001 RAL-142 202 chr2L 7977058 7977112 chr2L 7984069 7984105 297 16 7002 2.5 5.5 4.0 3.2 7047 chr2L 7977058 intron Snoo - chr2L 7980582 intron Snoo - chr2L 7984105 intron,5` UTR Snoo -,CG7231 + chr2L_16_7980001 chr2L_7980001 RAL-142 203 chr2L 8013629 8013638 chr2L 8023599 8023608 copia 4 9970 3.5 5.0 4.2 0.8 9979 chr2L 8013629 intron Tg + chr2L 8018618 intron Tg + chr2L 8023608 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-142 204 chr2L 8044051 8044062 chr2L 8044178 8044199 4 130 10.5 5.5 8.0 0.4 148 chr2L 8044051 exon CG7466 + chr2L 8044125 intron CG7466 + chr2L 8044199 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-142 205 chr2L 8044065 8044090 chr2L 8044177 8044217 16 126 6.5 5.5 6.0 2.3 152 chr2L 8044065 exon CG7466 + chr2L 8044141 intron CG7466 + chr2L 8044217 intron CG7466 + chr2L_16_8040001 chr2L_8040001 RAL-142 206 chr2L 8184917 8184939 chr2L 8185019 8185051 8 118 11.5 10.0 10.8 0.7 134 chr2L 8184917 intron Piezo + chr2L 8184984 intron Piezo + chr2L 8185051 intron Piezo + chr2L_8_8180001 chr2L_8180001 RAL-142 207 chr2L 8244719 8244745 chr2L 8244860 8244902 7 152 3.5 7.5 5.5 1.1 183 chr2L 8244719 intron CG8086 - chr2L 8244810 intron CG8086 - chr2L 8244902 intron CG8086 - chr2L_7_8240001 chr2L_8240001 RAL-142 208 chr2L 8452388 8452442 chr2L 8461594 8461642 roo 10 9202 2.5 3.0 2.8 2.6 9254 chr2L 8452388 intron fu12 - chr2L 8457015 intron fu12 - chr2L 8461642 intron fu12 - chr2L_10_8455001 chr2L_8455001 RAL-142 209 chr2L 8461806 8461859 chr2L 8461922 8461970 7 114 5.0 2.0 3.5 1.6 164 chr2L 8461806 intron fu12 - chr2L 8461888 intron fu12 - chr2L 8461970 intron fu12 - chr2L_7_8460001 chr2L_8460001 RAL-142 210 chr2L 8508976 8509004 chr2L 8509102 8509141 8 136 0.0 4.0 2.0 2.7 165 chr2L 8508976 intergenic CG13096 - chr2L 8509058 intergenic CG13096 - chr2L 8509141 3` UTR CG13096 - chr2L_8_8505001 chr2L_8505001 RAL-142 211 chr2L 8585517 8585580 chr2L 8586283 8586344 15 755 3.0 6.0 4.5 2.7 827 chr2L 8585517 intron Sema-1a + chr2L 8585930 intron Sema-1a + chr2L 8586344 intron Sema-1a + chr2L_15_8585001 chr2L_8585001 RAL-142 212 chr2L 8587268 8587312 chr2L 8587382 8587426 7 112 5.0 2.0 3.5 1.6 158 chr2L 8587268 intron Sema-1a + chr2L 8587347 intron Sema-1a + chr2L 8587426 intron Sema-1a + chr2L_7_8585001 chr2L_8585001 RAL-142 213 chr2L 8594440 8594491 chr2L 8601529 8601576 297 5 7082 2.0 1.0 1.5 2.0 7136 chr2L 8594440 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598008 intron Sema-1a + chr2L 8601576 intron Sema-1a + chr2L_5_8595001 chr2L_8595001 RAL-142 214 chr2L 8723078 8723122 chr2L 8731490 8731522 Tirant 5 8409 3.0 2.0 2.5 1.4 8444 chr2L 8723078 intron raw - chr2L 8727300 intron raw - chr2L 8731522 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-142 215 chr2L 8772763 8772818 chr2L 8772883 8772941 5 119 1.0 0.0 0.5 3.3 178 chr2L 8772763 intergenic CG9466 -,CG9465 - chr2L 8772852 intergenic CG9466 - chr2L 8772941 intergenic CG9466 - chr2L_5_8770001 chr2L_8770001 RAL-142 216 chr2L 8815744 8815777 chr2L 8815825 8815867 7 97 2.0 5.0 3.5 1.6 123 chr2L 8815744 intergenic not near genes chr2L 8815806 intergenic not near genes chr2L 8815867 intergenic not near genes chr2L_7_8815001 chr2L_8815001 RAL-142 217 chr2L 9000256 9000267 chr2L 9007798 9007812 roo 5 7543 10.5 7.5 9.0 0.5 7556 chr2L 9000256 intergenic Try29F + chr2L 9004034 intergenic not near genes chr2L 9007812 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-142 218 chr2L 9000271 9000302 chr2L 9007794 9007840 roo 6 7534 6.0 7.0 6.5 0.8 7569 chr2L 9000271 intergenic Try29F + chr2L 9004056 intergenic not near genes chr2L 9007840 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-142 219 chr2L 9053373 9053426 chr2L 9053643 9053679 19 265 5.0 0.5 2.8 5.0 306 chr2L 9053373 exon CG31708 - chr2L 9053526 intron CG31708 - chr2L 9053679 intron CG31708 - chr2L_19_9050001 chr2L_9050001 RAL-142 220 chr2L 9084336 9084340 chr2L 16217660 16217660 8 7133321 8.5 7.0 7.8 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-142 221 chr2L 9173065 9173088 chr2L 9173150 9173200 10 100 5.0 3.0 4.0 2.0 135 chr2L 9173065 intron tai + chr2L 9173132 intron tai + chr2L 9173200 intron tai + chr2L_10_9170001 chr2L_9170001 RAL-142 222 chr2L 9251113 9251129 chr2L 9251245 9251261 7 130 20.5 7.0 13.8 0.5 148 chr2L 9251113 intergenic aust -,borr - chr2L 9251187 intergenic aust -,borr - chr2L 9251261 intergenic borr -,aust - chr2L_7_9250001 chr2L_9250001 RAL-142 223 chr2L 9251136 9251177 chr2L 9251243 9251294 16 114 7.5 6.5 7.0 2.0 158 chr2L 9251136 intergenic aust -,borr - chr2L 9251215 intergenic aust -,borr - chr2L 9251294 intergenic borr -,aust - chr2L_16_9250001 chr2L_9250001 RAL-142 224 chr2L 9259215 9259236 chr2L 9259307 9259319 4 90 1.0 1.0 1.0 2.0 104 chr2L 9259215 intron Ggamma30A + chr2L 9259267 intron Ggamma30A + chr2L 9259319 intron Ggamma30A + chr2L_4_9255001 chr2L_9255001 RAL-142 225 chr2L 9264322 9264332 chr2L 9264457 9264467 4 135 11.0 7.0 9.0 0.4 145 chr2L 9264322 intron Ggamma30A + chr2L 9264394 intron Ggamma30A + chr2L 9264467 intron Ggamma30A + chr2L_4_9260001 chr2L_9260001 RAL-142 226 chr2L 9264333 9264366 chr2L 9264451 9264498 15 130 4.5 5.5 5.0 2.5 165 chr2L 9264333 intron Ggamma30A + chr2L 9264416 intron Ggamma30A + chr2L 9264498 intron Ggamma30A + chr2L_15_9260001 chr2L_9260001 RAL-142 227 chr2L 9278865 9278905 chr2L 9278982 9279020 16 119 3.5 0.0 1.8 5.7 155 chr2L 9278865 intron Ggamma30A + chr2L 9278942 intron Ggamma30A + chr2L 9279020 intron Ggamma30A + chr2L_16_9275001 chr2L_9275001 RAL-142 228 chr2L 9297347 9297405 chr2L 9297459 9297513 6 110 2.0 2.5 2.2 1.9 166 chr2L 9297347 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297513 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-142 229 chr2L 9300671 9300710 chr2L 9300789 9300830 4 120 3.0 0.0 1.5 1.6 159 chr2L 9300671 3` UTR Ggamma30A + chr2L 9300750 3` UTR Ggamma30A + chr2L 9300830 3` UTR Ggamma30A + chr2L_4_9300001 chr2L_9300001 RAL-142 230 chr2L 9304496 9304511 chr2L 9304590 9304615 6 105 5.0 6.0 5.5 0.9 119 chr2L 9304496 3` UTR CR42844 - chr2L 9304556 3` UTR CR42844 - chr2L 9304615 3` UTR CR42844 - chr2L_6_9300001 chr2L_9300001 RAL-142 231 chr2L 9321700 9321744 chr2L 9321811 9321855 6 106 0.5 1.5 1.0 3.0 155 chr2L 9321700 intergenic not near genes chr2L 9321778 intergenic not near genes chr2L 9321855 intergenic not near genes chr2L_6_9320001 chr2L_9320001 RAL-142 232 chr2L 9337884 9337907 chr2L 9337995 9338001 5 105 2.5 2.5 2.5 1.4 117 chr2L 9337884 intron Eaat1 + chr2L 9337942 intron Eaat1 + chr2L 9338001 intron Eaat1 + chr2L_5_9335001 chr2L_9335001 RAL-142 233 chr2L 9380208 9380243 chr2L 9380338 9380370 20 127 12.0 7.0 9.5 1.9 162 chr2L 9380208 exon Shawl - chr2L 9380289 intron Shawl - chr2L 9380370 intron Shawl - chr2L_20_9380001 chr2L_9380001 RAL-142 234 chr2L 9393489 9393527 chr2L 9396507 9396546 jockey 14 3014 2.5 6.0 4.2 2.7 3057 chr2L 9393489 intron Shawl - chr2L 9395018 intron Shawl - chr2L 9396546 intron Shawl - chr2L_14_9395001 chr2L_9395001 RAL-142 235 chr2L 9412618 9412679 chr2L 9412797 9412858 7 178 1.5 3.5 2.5 2.0 240 chr2L 9412618 intron Shawl - chr2L 9412738 intron Shawl - chr2L 9412858 intron Shawl - chr2L_7_9410001 chr2L_9410001 RAL-142 236 chr2L 9448913 9449162 chr2L 9449036 9449228 22 105 3.5 4.5 4.0 4.4 315 chr2L 9448913 intron numb + chr2L 9449070 intron numb + chr2L 9449228 intron numb + chr2L_22_9445001 chr2L_9445001 RAL-142 237 chr2L 9490496 9490524 chr2L 9490608 9490627 5 112 4.0 6.5 5.2 0.8 131 chr2L 9490496 intergenic not near genes chr2L 9490562 intergenic not near genes chr2L 9490627 intergenic not near genes chr2L_5_9490001 chr2L_9490001 RAL-142 238 chr2L 9623420 9623441 chr2L 9623766 9623767 8 342 16.0 3.0 9.5 0.8 347 chr2L 9623420 intergenic GlcAT-S + chr2L 9623594 intergenic GlcAT-S + chr2L 9623767 intergenic not near genes chr2L_8_9620001 chr2L_9620001 RAL-142 239 chr2L 9623442 9623455 chr2L 9623761 9623773 6 329 12.5 3.0 7.8 0.7 331 chr2L 9623442 intergenic GlcAT-S + chr2L 9623608 intergenic GlcAT-S + chr2L 9623773 intergenic not near genes chr2L_6_9620001 chr2L_9620001 RAL-142 240 chr2L 9719741 9719755 chr2L 9719858 9719872 5 117 4.5 3.0 3.8 1.0 131 chr2L 9719741 intron Nckx30C - chr2L 9719806 intron Nckx30C - chr2L 9719872 intron Nckx30C - chr2L_5_9715001 chr2L_9715001 RAL-142 241 chr2L 9723026 9723026 chr2L 16217660 16217660 4 6494634 14.5 7.0 10.8 0.3 6494634 chr2L 9723026 intron Nckx30C - chr2L 12970343 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12970001 chr2L_12970001 RAL-142 242 chr2L 9734266 9734286 chr2L 9734378 9734395 10 112 11.5 9.5 10.5 0.9 129 chr2L 9734266 intron Nckx30C - chr2L 9734330 intron Nckx30C - chr2L 9734395 intron Nckx30C - chr2L_10_9730001 chr2L_9730001 RAL-142 243 chr2L 9871526 9871563 chr2L 9871640 9871670 13 109 3.5 0.0 1.8 4.6 144 chr2L 9871526 intron nAChRalpha6 - chr2L 9871598 intron nAChRalpha6 - chr2L 9871670 intron nAChRalpha6 - chr2L_13_9870001 chr2L_9870001 RAL-142 244 chr2L 9973728 9973756 chr2L 9980850 9980850 HMS-Beagle 6 7127 2.0 3.5 2.8 1.6 7122 chr2L 9973728 intergenic not near genes chr2L 9977289 intergenic not near genes chr2L 9980850 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-142 245 chr2L 9986337 9986372 chr2L 9986449 9986458 5 107 9.0 5.5 7.2 0.6 121 chr2L 9986337 intron bib + chr2L 9986398 intron bib + chr2L 9986458 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-142 246 chr2L 10044478 10044536 chr2L 10044583 10044648 14 108 6.0 5.5 5.8 2.1 170 chr2L 10044478 intergenic not near genes chr2L 10044563 intergenic not near genes chr2L 10044648 intergenic not near genes chr2L_14_10040001 chr2L_10040001 RAL-142 247 chr2L 10045386 10045437 chr2L 10045496 10045538 13 102 4.0 11.5 7.8 1.5 152 chr2L 10045386 intergenic not near genes chr2L 10045462 intergenic not near genes chr2L 10045538 intergenic not near genes chr2L_13_10045001 chr2L_10045001 RAL-142 248 chr2L 10138164 10138189 chr2L 10143443 10143468 Rt1c 7 5275 5.0 11.5 8.2 0.8 5304 chr2L 10138164 intron CG44153 - chr2L 10140816 intron CG44153 - chr2L 10143468 intron CG44153 - chr2L_7_10140001 chr2L_10140001 RAL-142 249 chr2L 10156322 10156350 chr2L 10163808 10163840 blood 4 7488 2.5 2.0 2.2 1.2 7518 chr2L 10156322 intron,3` UTR CG44153 -,CG4839 + chr2L 10160081 intron CG44153 - chr2L 10163840 intron CG44153 - chr2L_4_10160001 chr2L_10160001 RAL-142 250 chr2L 10209812 10209831 chr2L 10209924 10209934 11 111 10.0 0.0 5.0 1.8 122 chr2L 10209812 intergenic CR44845 +,CG5727 -,CG5731 - chr2L 10209873 3` UTR CG5727 - chr2L 10209934 3` UTR CG5727 - chr2L_11_10205001 chr2L_10205001 RAL-142 251 chr2L 10294164 10294193 chr2L 10294262 10294304 5 105 1.0 2.0 1.5 2.0 140 chr2L 10294164 intron Hand - chr2L 10294234 intron Hand - chr2L 10294304 intron Hand - chr2L_5_10290001 chr2L_10290001 RAL-142 252 chr2L 10294651 10294680 chr2L 10294772 10294801 5 121 3.5 3.5 3.5 1.1 150 chr2L 10294651 intron Hand - chr2L 10294726 intron Hand - chr2L 10294801 intron Hand - chr2L_5_10290001 chr2L_10290001 RAL-142 253 chr2L 10515327 10515391 chr2L 10515455 10515491 30 125 6.0 3.0 4.5 5.5 164 chr2L 10515327 intron,intron CG45083 -,Fatp - chr2L 10515409 intron,intron CG45083 -,Fatp - chr2L 10515491 intron,intron CG45083 -,Fatp - chr2L_30_10515001 chr2L_10515001 RAL-142 254 chr2L 10540839 10540873 chr2L 10540951 10540986 7 108 2.5 3.0 2.8 1.8 147 chr2L 10540839 intergenic not near genes chr2L 10540912 intergenic not near genes chr2L 10540986 intergenic not near genes chr2L_7_10540001 chr2L_10540001 RAL-142 255 chr2L 10563879 10563939 chr2L 10564007 10564027 4 112 0.5 1.0 0.8 2.2 148 chr2L 10563879 intron Trim9 + chr2L 10563953 intron Trim9 + chr2L 10564027 intron Trim9 + chr2L_4_10560001 chr2L_10560001 RAL-142 256 chr2L 10572696 10572721 chr2L 10572782 10572837 11 110 3.5 2.0 2.8 2.9 141 chr2L 10572696 intron Trim9 + chr2L 10572766 intron Trim9 + chr2L 10572837 intron Trim9 + chr2L_11_10570001 chr2L_10570001 RAL-142 257 chr2L 10592829 10592862 chr2L 10600526 10600559 opus 5 7691 0.5 1.5 1.0 2.5 7730 chr2L 10592829 intron Trim9 + chr2L 10596694 intron Trim9 + chr2L 10600559 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-142 258 chr2L 10631230 10631280 chr2L 10631351 10631412 10 121 5.0 0.0 2.5 2.9 182 chr2L 10631230 intron CG7329 - chr2L 10631321 intron CG7329 - chr2L 10631412 intron CG7329 - chr2L_10_10630001 chr2L_10630001 RAL-142 259 chr2L 10785031 10785094 chr2L 10785142 10785161 13 98 5.5 3.0 4.2 2.5 130 chr2L 10785031 intron CG31869 - chr2L 10785096 intron CG31869 - chr2L 10785161 intron CG31869 - chr2L_13_10785001 chr2L_10785001 RAL-142 260 chr2L 10809522 10809555 chr2L 10809616 10809674 7 100 2.5 1.5 2.0 2.3 152 chr2L 10809522 intron Nos - chr2L 10809598 intron Nos - chr2L 10809674 intron Nos - chr2L_7_10805001 chr2L_10805001 RAL-142 261 chr2L 10836728 10836780 chr2L 10836842 10836893 9 109 2.5 2.0 2.2 2.8 165 chr2L 10836728 intron Nos - chr2L 10836810 intron Nos - chr2L 10836893 intron Nos - chr2L_9_10835001 chr2L_10835001 RAL-142 262 chr2L 10862846 10862869 chr2L 10864455 10864518 Rt1c 4 1626 3.5 5.5 4.5 0.7 1672 chr2L 10862846 3` UTR CR43807 - chr2L 10863682 intron CR43807 - chr2L 10864518 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-142 263 chr2L 10918550 10918555 chr2L 10918704 10918709 4 154 6.0 8.5 7.2 0.5 159 chr2L 10918550 intron dpr2 - chr2L 10918630 intron dpr2 - chr2L 10918709 intron dpr2 - chr2L_4_10915001 chr2L_10915001 RAL-142 264 chr2L 10918556 10918566 chr2L 10918702 10918705 7 147 5.0 7.5 6.2 1.0 149 chr2L 10918556 intron dpr2 - chr2L 10918630 intron dpr2 - chr2L 10918705 intron dpr2 - chr2L_7_10915001 chr2L_10915001 RAL-142 265 chr2L 11245254 11245279 chr2L 11245333 11245385 6 99 4.0 2.0 3.0 1.5 131 chr2L 11245254 intron ab + chr2L 11245320 intron ab + chr2L 11245385 intron ab + chr2L_6_11245001 chr2L_11245001 RAL-142 266 chr2L 11292350 11292406 chr2L 11292463 11292522 5 116 3.5 6.0 4.8 0.9 172 chr2L 11292350 intergenic not near genes chr2L 11292436 intergenic not near genes chr2L 11292522 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-142 267 chr2L 11303038 11303087 chr2L 11303137 11303187 21 108 3.0 0.5 1.8 7.5 149 chr2L 11303038 intergenic not near genes chr2L 11303112 intergenic not near genes chr2L 11303187 intergenic not near genes chr2L_21_11300001 chr2L_11300001 RAL-142 268 chr2L 11313088 11313138 chr2L 11313187 11313219 6 89 2.5 2.5 2.5 1.7 131 chr2L 11313088 intergenic not near genes chr2L 11313154 intergenic not near genes chr2L 11313219 intergenic not near genes chr2L_6_11310001 chr2L_11310001 RAL-142 269 chr2L 11315233 11315270 chr2L 11317672 11317688 G2 8 2428 2.5 0.5 1.5 3.2 2455 chr2L 11315233 intergenic not near genes chr2L 11316460 intergenic not near genes chr2L 11317688 intergenic not near genes chr2L_8_11315001 chr2L_11315001 RAL-142 270 chr2L 11418625 11418687 chr2L 11418734 11418801 8 99 3.0 2.0 2.5 2.3 176 chr2L 11418625 intergenic not near genes chr2L 11418713 intergenic not near genes chr2L 11418801 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-142 271 chr2L 11496616 11496649 chr2L 11496712 11496761 5 99 3.5 4.0 3.8 1.0 145 chr2L 11496616 intergenic CG6488 - chr2L 11496688 intergenic CG6488 - chr2L 11496761 intergenic CG6488 - chr2L_5_11495001 chr2L_11495001 RAL-142 272 chr2L 11540558 11540612 chr2L 11547995 11548049 Tabor 14 7437 3.0 3.0 3.0 3.5 7491 chr2L 11540558 intergenic not near genes chr2L 11544304 intergenic not near genes chr2L 11548049 intergenic not near genes chr2L_14_11540001 chr2L_11540001 RAL-142 273 chr2L 11555379 11555428 chr2L 11555532 11555568 6 150 3.5 1.0 2.2 1.9 189 chr2L 11555379 intergenic not near genes chr2L 11555474 intergenic not near genes chr2L 11555568 intergenic not near genes chr2L_6_11555001 chr2L_11555001 RAL-142 274 chr2L 11563625 11563658 chr2L 11568850 11568896 copia 4 5228 0.5 0.5 0.5 2.7 5271 chr2L 11563625 intergenic not near genes chr2L 11566260 intergenic not near genes chr2L 11568896 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-142 275 chr2L 11614034 11614074 chr2L 11615550 11615564 hopper2 4 1497 2.5 1.0 1.8 1.4 1530 chr2L 11614034 intron kek2 + chr2L 11614799 intron kek2 + chr2L 11615564 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-142 276 chr2L 11713490 11713539 chr2L 11720977 11721005 blood 11 7478 2.0 3.5 2.8 2.9 7515 chr2L 11713490 intergenic not near genes chr2L 11717248 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_11_11715001 chr2L_11715001 RAL-142 277 chr2L 11820392 11820460 chr2L 11820512 11820561 29 114 0.5 7.5 4.0 5.8 169 chr2L 11820392 intron Pde1c - chr2L 11820476 intron Pde1c - chr2L 11820561 intron Pde1c - chr2L_29_11820001 chr2L_11820001 RAL-142 278 chr2L 11841342 11841380 chr2L 11841455 11841490 6 111 1.0 0.0 0.5 4.0 148 chr2L 11841342 intron Pde1c - chr2L 11841416 intron Pde1c - chr2L 11841490 intron Pde1c - chr2L_6_11840001 chr2L_11840001 RAL-142 279 chr2L 11854682 11854708 chr2L 11854890 11854918 5 206 2.5 7.0 4.8 0.9 236 chr2L 11854682 intron Pde1c - chr2L 11854800 intron Pde1c - chr2L 11854918 intron Pde1c - chr2L_5_11850001 chr2L_11850001 RAL-142 280 chr2L 11865509 11865532 chr2L 11865641 11865644 4 120 5.5 5.0 5.2 0.6 135 chr2L 11865509 intron Pde1c - chr2L 11865576 intron Pde1c - chr2L 11865644 intron Pde1c - chr2L_4_11865001 chr2L_11865001 RAL-142 281 chr2L 12067312 12067349 chr2L 12074381 12074436 297 15 7083 8.5 6.0 7.2 1.8 7124 chr2L 12067312 intergenic not near genes chr2L 12070874 intergenic not near genes chr2L 12074436 intergenic not near genes chr2L_15_12070001 chr2L_12070001 RAL-142 282 chr2L 12132695 12132743 chr2L 12132816 12132850 16 119 6.5 3.0 4.8 2.8 155 chr2L 12132695 intron rho-6 - chr2L 12132772 intron rho-6 - chr2L 12132850 intron rho-6 - chr2L_16_12130001 chr2L_12130001 RAL-142 283 chr2L 12159908 12159930 chr2L 12159984 12160041 8 102 4.0 5.0 4.5 1.5 133 chr2L 12159908 intron CG31760 + chr2L 12159974 intron CG31760 + chr2L 12160041 intron CG31760 + chr2L_8_12155001 chr2L_12155001 RAL-142 284 chr2L 12176194 12176242 chr2L 12176293 12176349 12 106 4.0 8.0 6.0 1.7 155 chr2L 12176194 intron,intron aret +,atilla - chr2L 12176272 intron,intron aret +,atilla - chr2L 12176349 intron,intron aret +,atilla - chr2L_12_12175001 chr2L_12175001 RAL-142 285 chr2L 12233723 12233756 chr2L 12233814 12233847 4 97 1.5 0.5 1.0 2.0 124 chr2L 12233723 intron aret + chr2L 12233785 intron aret + chr2L 12233847 intron aret + chr2L_4_12230001 chr2L_12230001 RAL-142 286 chr2L 12253992 12254015 chr2L 12254119 12254135 6 126 4.5 0.0 2.2 1.9 143 chr2L 12253992 intron aret + chr2L 12254064 intron aret + chr2L 12254135 intron aret + chr2L_6_12250001 chr2L_12250001 RAL-142 287 chr2L 12277295 12277350 chr2L 12277818 12277872 5 520 2.0 2.0 2.0 1.7 577 chr2L 12277295 intron aret + chr2L 12277584 intron aret + chr2L 12277872 intron aret + chr2L_5_12275001 chr2L_12275001 RAL-142 288 chr2L 12287804 12287822 chr2L 12287915 12287933 4 110 1.0 5.0 3.0 1.0 129 chr2L 12287804 intron aret + chr2L 12287868 intron aret + chr2L 12287933 intron aret + chr2L_4_12285001 chr2L_12285001 RAL-142 289 chr2L 12309590 12309644 chr2L 12309721 12309775 12 129 6.5 3.5 5.0 2.0 185 chr2L 12309590 intron aret + chr2L 12309682 intron aret + chr2L 12309775 intron aret + chr2L_12_12305001 chr2L_12305001 RAL-142 290 chr2L 12400476 12400538 chr2L 12404636 12404699 15 4162 29.0 29.5 29.2 0.5 4223 chr2L 12400476 intron Pkd2 + chr2L 12402588 intergenic not near genes chr2L 12404699 intron vir-1 - chr2L_15_12400001 chr2L_12400001 RAL-142 291 chr2L 12680878 12680928 chr2L 12680993 12681015 4 99 1.5 0.0 0.8 2.2 137 chr2L 12680878 intron pdm2 + chr2L 12680946 intron pdm2 + chr2L 12681015 intron pdm2 + chr2L_4_12680001 chr2L_12680001 RAL-142 292 chr2L 12699813 12699880 chr2L 12699924 12699933 15 78 6.5 4.0 5.2 2.4 120 chr2L 12699813 exon CG17036 - chr2L 12699873 exon CG17036 - chr2L 12699933 exon CG17036 - chr2L_15_12695001 chr2L_12695001 RAL-142 293 chr2L 12731037 12731085 chr2L 12735829 12735887 F-element 15 4800 3.5 5.0 4.2 2.9 4850 chr2L 12731037 intron MRP + chr2L 12733462 intron MRP + chr2L 12735887 intron MRP + chr2L_15_12730001 chr2L_12730001 RAL-142 294 chr2L 12736636 12736695 chr2L 12736747 12736792 11 101 6.0 3.5 4.8 1.9 156 chr2L 12736636 intron MRP + chr2L 12736714 intron MRP + chr2L 12736792 intron MRP + chr2L_11_12735001 chr2L_12735001 RAL-142 295 chr2L 12739146 12739198 chr2L 12743961 12744014 Doc 20 4810 5.5 6.0 5.8 2.9 4868 chr2L 12739146 exon MRP + chr2L 12741580 intron MRP + chr2L 12744014 exon MRP + chr2L_20_12740001 chr2L_12740001 RAL-142 296 chr2L 12751280 12751340 chr2L 12751398 12751458 11 107 2.0 1.0 1.5 4.4 178 chr2L 12751280 intergenic not near genes chr2L 12751369 intergenic not near genes chr2L 12751458 intergenic not near genes chr2L_11_12750001 chr2L_12750001 RAL-142 297 chr2L 12763793 12763808 chr2L 12764039 12764055 BS 6 244 7.5 0.5 4.0 1.2 262 chr2L 12763793 intergenic not near genes chr2L 12763924 intergenic not near genes chr2L 12764055 intergenic not near genes chr2L_6_12760001 chr2L_12760001 RAL-142 298 chr2L 12791610 12791621 chr2L 12795295 12795296 F-element 5 3694 1.0 4.5 2.8 1.3 3686 chr2L 12791610 intergenic not near genes chr2L 12793453 intergenic not near genes chr2L 12795296 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-142 299 chr2L 12807421 12807474 chr2L 12807519 12807568 9 102 2.5 3.0 2.8 2.4 147 chr2L 12807421 intergenic CR43818 - chr2L 12807494 intergenic CR43818 - chr2L 12807568 intergenic CR43818 - chr2L_9_12805001 chr2L_12805001 RAL-142 300 chr2L 12826571 12826587 chr2L 12826695 12826707 7 123 13.5 7.5 10.5 0.6 136 chr2L 12826571 intergenic not near genes chr2L 12826639 intergenic not near genes chr2L 12826707 intergenic not near genes chr2L_7_12825001 chr2L_12825001 RAL-142 301 chr2L 12826592 12826628 chr2L 12826694 12826751 10 119 4.0 7.5 5.8 1.5 159 chr2L 12826592 intergenic not near genes chr2L 12826672 intergenic not near genes chr2L 12826751 intergenic not near genes chr2L_10_12825001 chr2L_12825001 RAL-142 302 chr2L 12848397 12848462 chr2L 12848521 12848585 8 123 2.0 0.5 1.2 3.6 188 chr2L 12848397 intergenic not near genes chr2L 12848491 intergenic not near genes chr2L 12848585 intergenic not near genes chr2L_8_12845001 chr2L_12845001 RAL-142 303 chr2L 12861688 12861716 chr2L 12863170 12863199 hobo 6 1490 1.5 1.0 1.2 2.7 1511 chr2L 12861688 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863199 intergenic not near genes chr2L_6_12860001 chr2L_12860001 RAL-142 304 chr2L 12885657 12885683 chr2L 12885775 12885782 6 112 5.5 2.0 3.8 1.2 125 chr2L 12885657 intergenic not near genes chr2L 12885720 intergenic not near genes chr2L 12885782 intergenic not near genes chr2L_6_12885001 chr2L_12885001 RAL-142 305 chr2L 12888595 12888623 chr2L 12888810 12888827 5 216 3.5 5.0 4.2 1.0 232 chr2L 12888595 intergenic not near genes chr2L 12888711 intergenic not near genes chr2L 12888827 intergenic not near genes chr2L_5_12885001 chr2L_12885001 RAL-142 306 chr2L 12905452 12905498 chr2L 12905561 12905610 12 110 5.0 5.0 5.0 2.0 158 chr2L 12905452 intergenic not near genes chr2L 12905531 intergenic not near genes chr2L 12905610 intergenic not near genes chr2L_12_12905001 chr2L_12905001 RAL-142 307 chr2L 12933821 12933837 chr2L 12941323 12941325 blood 7 7498 17.0 6.0 11.5 0.6 7504 chr2L 12933821 intergenic not near genes chr2L 12937573 intergenic not near genes chr2L 12941325 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-142 308 chr2L 12933838 12933883 chr2L 12941315 12941351 blood 11 7488 7.5 3.5 5.5 1.7 7513 chr2L 12933838 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941351 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-142 309 chr2L 13036247 13036266 chr2L 13036524 13036543 X-element 5 276 2.5 6.0 4.2 1.0 296 chr2L 13036247 intron CG9932 - chr2L 13036395 intron CG9932 - chr2L 13036543 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-142 310 chr2L 13204298 13204338 chr2L 13204414 13204426 6 113 5.0 4.0 4.5 1.1 128 chr2L 13204298 intron Pect + chr2L 13204362 intron Pect + chr2L 13204426 intron Pect + chr2L_6_13200001 chr2L_13200001 RAL-142 311 chr2L 13215374 13215406 chr2L 13215674 13215716 9 306 2.5 6.0 4.2 1.7 342 chr2L 13215374 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215545 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215716 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_9_13215001 chr2L_13215001 RAL-142 312 chr2L 13326190 13326242 chr2L 13327267 13327309 15 1073 5.5 0.0 2.8 3.9 1119 chr2L 13326190 intron CG43778 - chr2L 13326750 intron CG43778 - chr2L 13327309 intron CG43778 - chr2L_15_13325001 chr2L_13325001 RAL-142 313 chr2L 13405632 13405650 chr2L 13410448 13410482 Doc 9 4824 11.5 13.5 12.5 0.7 4850 chr2L 13405632 exon CG7110 + chr2L 13408057 intron CG7110 + chr2L 13410482 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-142 314 chr2L 13405651 13405675 chr2L 13410447 13410468 Doc 17 4820 6.0 13.0 9.5 1.6 4817 chr2L 13405651 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410468 intron CG7110 + chr2L_17_13405001 chr2L_13405001 RAL-142 315 chr2L 13449443 13449445 chr2L 13456914 13456915 Quasimodo 4 7471 14.5 10.0 12.2 0.3 7472 chr2L 13449443 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453179 intron CG42784 + chr2L 13456915 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-142 316 chr2L 13449446 13449483 chr2L 13456907 13456954 Quasimodo 10 7463 7.5 7.0 7.2 1.2 7508 chr2L 13449446 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453200 intron CG42784 + chr2L 13456954 intron CG42784 + chr2L_10_13450001 chr2L_13450001 RAL-142 317 chr2L 13481439 13481454 chr2L 13482081 13482096 jockey 4 642 7.5 7.5 7.5 0.5 657 chr2L 13481439 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482096 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-142 318 chr2L 13560368 13560416 chr2L 13565224 13565271 F-element 7 4856 11.5 2.5 7.0 0.9 4903 chr2L 13560368 intron kuz + chr2L 13562820 intron kuz + chr2L 13565271 intron kuz + chr2L_7_13560001 chr2L_13560001 RAL-142 319 chr2L 13699566 13699584 chr2L 13699662 13699675 6 92 0.5 2.5 1.5 2.4 109 chr2L 13699566 intron CG31814 - chr2L 13699620 intron CG31814 - chr2L 13699675 intron CG31814 - chr2L_6_13695001 chr2L_13695001 RAL-142 320 chr2L 13719608 13719659 chr2L 13719824 13719869 7 205 3.5 3.5 3.5 1.6 261 chr2L 13719608 intergenic not near genes chr2L 13719738 intergenic not near genes chr2L 13719869 intergenic not near genes chr2L_7_13715001 chr2L_13715001 RAL-142 321 chr2L 13720204 13720224 chr2L 13720327 13720332 7 121 5.5 0.0 2.8 1.8 128 chr2L 13720204 intergenic not near genes chr2L 13720268 intergenic not near genes chr2L 13720332 intergenic not near genes chr2L_7_13720001 chr2L_13720001 RAL-142 322 chr2L 13800161 13800207 chr2L 13800298 13800311 9 132 1.5 6.0 3.8 1.9 150 chr2L 13800161 intergenic Sec71 + chr2L 13800236 intergenic not near genes chr2L 13800311 intergenic not near genes chr2L_9_13800001 chr2L_13800001 RAL-142 323 chr2L 13853066 13853102 chr2L 13862251 13862282 roo 6 9184 4.0 4.0 4.0 1.2 9216 chr2L 13853066 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862282 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-142 324 chr2L 13853103 13853109 chr2L 13862248 13862264 roo 4 9166 2.0 3.5 2.8 1.1 9161 chr2L 13853103 intron CenG1A + chr2L 13857684 intron CenG1A + chr2L 13862264 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-142 325 chr2L 13913562 13913604 chr2L 13913709 13913717 13 142 11.0 10.0 10.5 1.1 155 chr2L 13913562 intergenic not near genes chr2L 13913640 intergenic not near genes chr2L 13913717 intergenic not near genes chr2L_13_13910001 chr2L_13910001 RAL-142 326 chr2L 13944409 13944430 chr2L 13944564 13944585 9 153 3.0 12.0 7.5 1.1 176 chr2L 13944409 intron Ance-3 + chr2L 13944497 intron Ance-3 + chr2L 13944585 intron Ance-3 + chr2L_9_13940001 chr2L_13940001 RAL-142 327 chr2L 14017739 14017796 chr2L 14017861 14017915 8 124 6.0 11.0 8.5 0.8 176 chr2L 14017739 intron bgm + chr2L 14017827 intron bgm + chr2L 14017915 intron bgm + chr2L_8_14015001 chr2L_14015001 RAL-142 328 chr2L 14056774 14056836 chr2L 14056895 14056904 6 110 1.0 1.5 1.2 2.7 130 chr2L 14056774 intron nAChRalpha5 + chr2L 14056839 intron nAChRalpha5 + chr2L 14056904 intron nAChRalpha5 + chr2L_6_14055001 chr2L_14055001 RAL-142 329 chr2L 14109490 14109541 chr2L 14109611 14109667 10 125 6.5 3.5 5.0 1.7 177 chr2L 14109490 intergenic CG15293 -,CG31769 - chr2L 14109578 intergenic CG31769 -,CG15293 - chr2L 14109667 3` UTR CG31769 - chr2L_10_14105001 chr2L_14105001 RAL-142 330 chr2L 14160666 14160718 chr2L 14160779 14160839 6 120 3.5 7.0 5.2 1.0 173 chr2L 14160666 intergenic CG17341 +,CG43332 - chr2L 14160752 intergenic CG17341 +,CG43332 - chr2L 14160839 intergenic CG17341 +,CG43332 - chr2L_6_14160001 chr2L_14160001 RAL-142 331 chr2L 14168452 14168516 chr2L 14168617 14168674 13 159 5.5 6.5 6.0 1.9 222 chr2L 14168452 intron CG43333 - chr2L 14168563 intron CG43333 - chr2L 14168674 intron CG43333 - chr2L_13_14165001 chr2L_14165001 RAL-142 332 chr2L 14173839 14173887 chr2L 14173945 14173961 19 110 4.5 5.0 4.8 3.3 122 chr2L 14173839 intron CG43333 - chr2L 14173900 intron CG43333 - chr2L 14173961 intron CG43333 - chr2L_19_14170001 chr2L_14170001 RAL-142 333 chr2L 14410003 14410063 chr2L 14410133 14410193 12 125 3.5 5.5 4.5 2.2 190 chr2L 14410003 5` UTR CR44733 + chr2L 14410098 intergenic CR44733 + chr2L 14410193 intergenic CR44733 + chr2L_12_14410001 chr2L_14410001 RAL-142 334 chr2L 14436588 14436633 chr2L 14436724 14436738 6 126 4.0 3.5 3.8 1.2 150 chr2L 14436588 intergenic not near genes chr2L 14436663 intergenic not near genes chr2L 14436738 intergenic not near genes chr2L_6_14435001 chr2L_14435001 RAL-142 335 chr2L 14502351 14502352 chr2L 14502450 14502465 4 106 0.5 3.0 1.8 1.4 114 chr2L 14502351 intergenic not near genes chr2L 14502408 intergenic not near genes chr2L 14502465 intergenic not near genes chr2L_4_14500001 chr2L_14500001 RAL-142 336 chr2L 14570693 14570719 chr2L 14570809 14570813 12 111 1.5 10.5 6.0 1.7 120 chr2L 14570693 intergenic not near genes chr2L 14570753 intergenic not near genes chr2L 14570813 intergenic not near genes chr2L_12_14570001 chr2L_14570001 RAL-142 337 chr2L 14642556 14642598 chr2L 14651738 14651796 roo 12 9188 3.0 7.0 5.0 2.0 9240 chr2L 14642556 intron osp - chr2L 14647176 intron osp - chr2L 14651796 intron osp - chr2L_12_14645001 chr2L_14645001 RAL-142 338 chr2L 14667733 14667793 chr2L 14667851 14667911 4 114 0.5 0.5 0.5 2.7 178 chr2L 14667733 intron osp - chr2L 14667822 intron osp - chr2L 14667911 intron osp - chr2L_4_14665001 chr2L_14665001 RAL-142 339 chr2L 14768913 14768957 chr2L 14769011 14769070 9 104 0.0 5.0 2.5 2.6 157 chr2L 14768913 intergenic not near genes chr2L 14768992 intergenic not near genes chr2L 14769070 intergenic not near genes chr2L_9_14765001 chr2L_14765001 RAL-142 340 chr2L 14840949 14841006 chr2L 14841072 14841103 12 118 1.5 1.5 1.5 4.8 154 chr2L 14840949 3` UTR CR43805 - chr2L 14841026 3` UTR CR43805 - chr2L 14841103 3` UTR CR43805 - chr2L_12_14840001 chr2L_14840001 RAL-142 341 chr2L 14889920 14889982 chr2L 14890380 14890436 jockey 9 454 1.5 2.5 2.0 3.0 516 chr2L 14889920 intergenic not near genes chr2L 14890178 intergenic not near genes chr2L 14890436 intergenic not near genes chr2L_9_14890001 chr2L_14890001 RAL-142 342 chr2L 14984381 14984403 chr2L 14991997 14992040 opus 6 7634 4.0 3.0 3.5 1.3 7659 chr2L 14984381 intron mol - chr2L 14988210 intron mol - chr2L 14992040 intron mol - chr2L_6_14985001 chr2L_14985001 RAL-142 343 chr2L 15013117 15013178 chr2L 15013256 15013322 14 134 2.5 4.0 3.2 3.3 205 chr2L 15013117 intergenic CR43856 - chr2L 15013220 intergenic not near genes chr2L 15013322 intergenic not near genes chr2L_14_15010001 chr2L_15010001 RAL-142 344 chr2L 15021412 15021472 chr2L 15021523 15021565 15 108 8.5 5.5 7.0 1.9 153 chr2L 15021412 intron GABA-B-R1 + chr2L 15021488 intron GABA-B-R1 + chr2L 15021565 intron GABA-B-R1 + chr2L_15_15020001 chr2L_15020001 RAL-142 345 chr2L 15098535 15098541 chr2L 15098631 15098656 4 102 2.5 2.0 2.2 1.2 121 chr2L 15098535 intergenic not near genes chr2L 15098596 intergenic not near genes chr2L 15098656 intergenic not near genes chr2L_4_15095001 chr2L_15095001 RAL-142 346 chr2L 15122741 15122802 chr2L 15122856 15122917 8 115 2.0 3.5 2.8 2.1 176 chr2L 15122741 intergenic not near genes chr2L 15122829 intergenic not near genes chr2L 15122917 intergenic not near genes chr2L_8_15120001 chr2L_15120001 RAL-142 347 chr2L 15125575 15125622 chr2L 15125680 15125737 7 113 3.5 3.0 3.2 1.7 162 chr2L 15125575 intergenic not near genes chr2L 15125656 intergenic not near genes chr2L 15125737 intergenic not near genes chr2L_7_15125001 chr2L_15125001 RAL-142 348 chr2L 15226349 15226385 chr2L 15226453 15226468 4 95 5.0 4.0 4.5 0.7 119 chr2L 15226349 intergenic not near genes chr2L 15226408 intergenic not near genes chr2L 15226468 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-142 349 chr2L 15226389 15226396 chr2L 15226445 15226467 5 81 4.5 4.0 4.2 1.0 78 chr2L 15226389 intergenic not near genes chr2L 15226428 intergenic not near genes chr2L 15226467 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-142 350 chr2L 15239918 15239964 chr2L 15240051 15240109 10 136 6.0 9.0 7.5 1.2 191 chr2L 15239918 intron ZnT35C - chr2L 15240014 intron ZnT35C - chr2L 15240109 intron ZnT35C - chr2L_10_15240001 chr2L_15240001 RAL-142 351 chr2L 15252948 15253003 chr2L 15253062 15253117 19 112 6.5 6.0 6.2 2.6 169 chr2L 15252948 intron dao + chr2L 15253032 intron dao + chr2L 15253117 intron dao + chr2L_19_15250001 chr2L_15250001 RAL-142 352 chr2L 15318930 15318951 chr2L 15319041 15319062 6 108 5.5 7.5 6.5 0.8 132 chr2L 15318930 intergenic nht - chr2L 15318996 intergenic nht - chr2L 15319062 intergenic nht - chr2L_6_15315001 chr2L_15315001 RAL-142 353 chr2L 15355683 15355743 chr2L 15355796 15355849 11 108 2.0 3.5 2.8 2.9 166 chr2L 15355683 intergenic not near genes chr2L 15355766 intergenic not near genes chr2L 15355849 intergenic not near genes chr2L_11_15355001 chr2L_15355001 RAL-142 354 chr2L 15375788 15375833 chr2L 15375930 15375978 9 144 4.5 4.5 4.5 1.6 190 chr2L 15375788 intergenic not near genes chr2L 15375883 intergenic not near genes chr2L 15375978 intergenic not near genes chr2L_9_15375001 chr2L_15375001 RAL-142 355 chr2L 15446049 15446071 chr2L 15453533 15453574 blood 4 7490 1.0 6.0 3.5 0.9 7525 chr2L 15446049 intergenic not near genes chr2L 15449812 intergenic not near genes chr2L 15453574 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-142 356 chr2L 15499876 15499936 chr2L 15499999 15500048 14 121 1.5 7.0 4.2 2.7 172 chr2L 15499876 intron lace + chr2L 15499962 intron lace + chr2L 15500048 intron lace + chr2L_14_15495001 chr2L_15495001 RAL-142 357 chr2L 15508829 15508868 chr2L 15508909 15508967 9 104 2.5 1.5 2.0 3.0 138 chr2L 15508829 intergenic not near genes chr2L 15508898 intergenic not near genes chr2L 15508967 intergenic not near genes chr2L_9_15505001 chr2L_15505001 RAL-142 358 chr2L 15510914 15510963 chr2L 15511035 15511076 7 113 5.0 6.0 5.5 1.1 162 chr2L 15510914 intergenic not near genes chr2L 15510995 intergenic not near genes chr2L 15511076 intergenic not near genes chr2L_7_15510001 chr2L_15510001 RAL-142 359 chr2L 15514299 15514325 chr2L 15514409 15514425 7 113 4.0 3.0 3.5 1.6 126 chr2L 15514299 intergenic not near genes chr2L 15514362 intergenic not near genes chr2L 15514425 intergenic not near genes chr2L_7_15510001 chr2L_15510001 RAL-142 360 chr2L 15535874 15535913 chr2L 15535988 15536033 9 116 2.0 7.0 4.5 1.6 159 chr2L 15535874 intergenic not near genes chr2L 15535954 intergenic not near genes chr2L 15536033 intergenic not near genes chr2L_9_15535001 chr2L_15535001 RAL-142 361 chr2L 15586383 15586433 chr2L 15593470 15593520 297 17 7081 7.5 4.0 5.8 2.5 7137 chr2L 15586383 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593520 intergenic not near genes chr2L_17_15585001 chr2L_15585001 RAL-142 362 chr2L 15644014 15644028 chr2L 15644085 15644126 4 98 0.5 0.5 0.5 2.7 112 chr2L 15644014 intergenic CG4587 - chr2L 15644070 intergenic CG4587 - chr2L 15644126 intergenic CG4587 - chr2L_4_15640001 chr2L_15640001 RAL-142 363 chr2L 15823323 15823351 chr2L 15823434 15823457 4 107 1.0 2.0 1.5 1.6 134 chr2L 15823323 intergenic CR44601 - chr2L 15823390 intergenic CR44601 - chr2L 15823457 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-142 364 chr2L 15826863 15826891 chr2L 15829291 15829320 Tabor 6 2429 2.0 1.5 1.8 2.1 2457 chr2L 15826863 intergenic not near genes chr2L 15828092 intergenic not near genes chr2L 15829320 intergenic not near genes chr2L_6_15825001 chr2L_15825001 RAL-142 365 chr2L 15956006 15956056 chr2L 15957490 15957528 hobo 7 1480 0.0 3.5 1.8 2.5 1522 chr2L 15956006 intron beat-Ib - chr2L 15956767 intron beat-Ib - chr2L 15957528 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-142 366 chr2L 16008674 16008691 chr2L 16008807 16008815 6 133 4.5 1.5 3.0 1.5 141 chr2L 16008674 intron beat-Ic + chr2L 16008744 intron beat-Ic + chr2L 16008815 intron beat-Ic + chr2L_6_16005001 chr2L_16005001 RAL-142 367 chr2L 16059922 16059981 chr2L 16060055 16060114 6 131 2.0 1.0 1.5 2.4 192 chr2L 16059922 intron beat-Ia + chr2L 16060018 intron beat-Ia + chr2L 16060114 intron beat-Ia + chr2L_6_16060001 chr2L_16060001 RAL-142 368 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 50 145889 11.5 7.0 9.2 4.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_50_16140001 chr2L_16140001 RAL-142 369 chr2L 16141168 16141191 chr2L 16146383 16146418 copia 7 5233 0.0 4.5 2.2 2.2 5250 chr2L 16141168 intergenic not near genes chr2L 16143793 intergenic not near genes chr2L 16146418 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-142 370 chr2L 9084339 9084340 chr2L 16217660 16217660 7 7133320 8.5 7.0 7.8 0.8 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-142 371 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 26 145889 11.5 7.0 9.2 2.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_26_16140001 chr2L_16140001 RAL-142 372 chr2L 16217660 16217660 chr2L 18622718 18622749 5 2405065 8.5 22.0 15.2 0.3 2405089 chr2L 16217660 intergenic not near genes chr2L 17420204 intron Dif - chr2L 18622749 intron MESR3 + chr2L_5_17420001 chr2L_17420001 RAL-142 373 chr2L 16217660 16217660 chr2L 21768292 21768294 6 5550633 8.5 25.5 17.0 0.3 5550634 chr2L 16217660 intergenic not near genes chr2L 18992977 intergenic CG10650 - chr2L 21768294 intron CG31612 - chr2L_6_18990001 chr2L_18990001 RAL-142 374 chr2L 16226146 16226206 chr2L 16226268 16226328 23 118 5.0 6.0 5.5 3.5 182 chr2L 16226146 intergenic not near genes chr2L 16226237 intergenic not near genes chr2L 16226328 intergenic not near genes chr2L_23_16225001 chr2L_16225001 RAL-142 375 chr2L 16243696 16243858 chr2L 16243787 16243982 6 114 1.5 1.5 1.5 2.4 286 chr2L 16243696 exon CG42818 + chr2L 16243839 exon CG42818 + chr2L 16243982 exon CG42818 + chr2L_6_16240001 chr2L_16240001 RAL-142 376 chr2L 16254889 16254906 chr2L 16255155 16255200 9 287 6.5 7.0 6.8 1.2 311 chr2L 16254889 intron PRL-1 - chr2L 16255044 intron PRL-1 - chr2L 16255200 intron PRL-1 - chr2L_9_16255001 chr2L_16255001 RAL-142 377 chr2L 16280254 16280285 chr2L 16281433 16281454 1360 12 1183 3.5 1.5 2.5 3.4 1200 chr2L 16280254 intron crp - chr2L 16280854 intron crp - chr2L 16281454 intron crp - chr2L_12_16280001 chr2L_16280001 RAL-142 378 chr2L 16354552 16354786 chr2L 16354682 16354913 11 121 3.0 28.5 15.8 0.7 361 chr2L 16354552 intergenic CG4455 +,CaBP1 - chr2L 16354732 intergenic CaBP1 -,CG4455 + chr2L 16354913 3` UTR CaBP1 - chr2L_11_16350001 chr2L_16350001 RAL-142 379 chr2L 16388910 16388914 chr2L 16388977 16389003 5 85 5.0 3.0 4.0 1.0 93 chr2L 16388910 intergenic not near genes chr2L 16388956 intergenic not near genes chr2L 16389003 intergenic not near genes chr2L_5_16385001 chr2L_16385001 RAL-142 380 chr2L 16434081 16434125 chr2L 16434198 16434215 11 112 3.0 4.0 3.5 2.4 134 chr2L 16434081 intron CG5888 - chr2L 16434148 intron CG5888 - chr2L 16434215 intron CG5888 - chr2L_11_16430001 chr2L_16430001 RAL-142 381 chr2L 16507946 16507958 chr2L 16508061 16508076 5 118 0.0 12.5 6.2 0.7 130 chr2L 16507946 intergenic CG5953 -,Tpr2 + chr2L 16508011 intergenic CG5953 -,Tpr2 + chr2L 16508076 intergenic CG5953 -,Tpr2 + chr2L_5_16505001 chr2L_16505001 RAL-142 382 chr2L 16511926 16511983 chr2L 16519075 16519132 HMS-Beagle 22 7148 6.5 3.5 5.0 3.7 7206 chr2L 16511926 intron CG5953 - chr2L 16515529 intron CG5953 - chr2L 16519132 intron CG5953 - chr2L_22_16515001 chr2L_16515001 RAL-142 383 chr2L 16622842 16622897 chr2L 16622998 16623051 27 155 2.5 0.5 1.5 10.8 209 chr2L 16622842 intron CG42389 + chr2L 16622946 intron CG42389 + chr2L 16623051 intron CG42389 + chr2L_27_16620001 chr2L_16620001 RAL-142 384 chr2L 16665813 16665827 chr2L 16665917 16665924 5 108 4.5 5.0 4.8 0.9 111 chr2L 16665813 intron Trpgamma - chr2L 16665868 intron Trpgamma - chr2L 16665924 exon Trpgamma - chr2L_5_16665001 chr2L_16665001 RAL-142 385 chr2L 16719918 16719929 chr2L 16720070 16720093 7 149 45.0 42.5 43.8 0.2 175 chr2L 16719918 intergenic Cyt-c-p +,Cyt-c-d + chr2L 16720006 intron Cyt-c-p + chr2L 16720093 intron Cyt-c-p + chr2L_7_16720001 chr2L_16720001 RAL-142 386 chr2L 16867000 16867035 chr2L 16867123 16867155 8 126 3.0 2.5 2.8 2.1 155 chr2L 16867000 intergenic not near genes chr2L 16867078 intergenic not near genes chr2L 16867155 intergenic not near genes chr2L_8_16865001 chr2L_16865001 RAL-142 387 chr2L 16952655 16952714 chr2L 16952799 16952842 8 137 1.0 1.0 1.0 4.0 187 chr2L 16952655 intergenic not near genes chr2L 16952748 intergenic not near genes chr2L 16952842 intergenic not near genes chr2L_8_16950001 chr2L_16950001 RAL-142 388 chr2L 16958089 16958128 chr2L 16962912 16962943 Doc 7 4818 6.5 5.5 6.0 1.0 4854 chr2L 16958089 intergenic not near genes chr2L 16960516 intergenic not near genes chr2L 16962943 intergenic not near genes chr2L_7_16960001 chr2L_16960001 RAL-142 389 chr2L 17003712 17003756 chr2L 17003858 17003876 11 143 6.0 4.0 5.0 1.8 164 chr2L 17003712 intergenic not near genes chr2L 17003794 intergenic not near genes chr2L 17003876 intergenic not near genes chr2L_11_17000001 chr2L_17000001 RAL-142 390 chr2L 17033897 17033943 chr2L 17034015 17034063 4 116 1.0 2.0 1.5 1.6 166 chr2L 17033897 intergenic not near genes chr2L 17033980 intergenic not near genes chr2L 17034063 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-142 391 chr2L 17052399 17052436 chr2L 17052546 17052583 6 147 2.5 2.5 2.5 1.7 184 chr2L 17052399 intergenic not near genes chr2L 17052491 intergenic not near genes chr2L 17052583 intergenic not near genes chr2L_6_17050001 chr2L_17050001 RAL-142 392 chr2L 17053252 17053302 chr2L 17053692 17053731 9 439 0.5 1.5 1.0 4.5 479 chr2L 17053252 intergenic not near genes chr2L 17053492 intergenic not near genes chr2L 17053731 intergenic not near genes chr2L_9_17050001 chr2L_17050001 RAL-142 393 chr2L 17062722 17062786 chr2L 17062839 17062903 9 113 2.0 1.5 1.8 3.2 181 chr2L 17062722 intergenic not near genes chr2L 17062812 intergenic not near genes chr2L 17062903 intergenic not near genes chr2L_9_17060001 chr2L_17060001 RAL-142 394 chr2L 17122771 17122805 chr2L 17122864 17122875 7 93 1.5 1.5 1.5 2.8 104 chr2L 17122771 intergenic not near genes chr2L 17122823 intergenic CG31784 - chr2L 17122875 intergenic CG31784 - chr2L_7_17120001 chr2L_17120001 RAL-142 395 chr2L 17260858 17260882 chr2L 17260971 17260974 5 111 3.0 2.0 2.5 1.4 116 chr2L 17260858 intergenic beat-IIIc - chr2L 17260916 intergenic beat-IIIc - chr2L 17260974 intergenic beat-IIIc - chr2L_5_17260001 chr2L_17260001 RAL-142 396 chr2L 17273194 17273212 chr2L 17277986 17278030 F-element 4 4806 2.5 5.5 4.0 0.8 4836 chr2L 17273194 intergenic not near genes chr2L 17275612 intergenic not near genes chr2L 17278030 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-142 397 chr2L 17372309 17372364 chr2L 17372424 17372438 13 111 2.0 1.5 1.8 4.6 129 chr2L 17372309 intron Lrch - chr2L 17372374 intron Lrch - chr2L 17372438 intron Lrch - chr2L_13_17370001 chr2L_17370001 RAL-142 398 chr2L 17379678 17379695 chr2L 17379798 17379801 6 118 4.5 4.5 4.5 1.1 123 chr2L 17379678 intron Lrch - chr2L 17379740 intron Lrch - chr2L 17379801 intron Lrch - chr2L_6_17375001 chr2L_17375001 RAL-142 399 chr2L 17425738 17425765 chr2L 17425900 17425927 4 162 3.5 2.5 3.0 1.0 189 chr2L 17425738 intron Dif - chr2L 17425832 intron Dif - chr2L 17425927 intron Dif - chr2L_4_17425001 chr2L_17425001 RAL-142 400 chr2L 17543579 17543623 chr2L 17543695 17543737 15 119 2.5 7.0 4.8 2.6 158 chr2L 17543579 intergenic not near genes chr2L 17543658 intergenic not near genes chr2L 17543737 intergenic not near genes chr2L_15_17540001 chr2L_17540001 RAL-142 401 chr2L 17623657 17623687 chr2L 17623907 17623941 6 254 2.5 0.5 1.5 2.4 284 chr2L 17623657 intergenic not near genes chr2L 17623799 intergenic not near genes chr2L 17623941 intergenic not near genes chr2L_6_17620001 chr2L_17620001 RAL-142 402 chr2L 17637164 17637191 chr2L 17637264 17637306 4 114 1.5 2.0 1.8 1.4 142 chr2L 17637164 intergenic not near genes chr2L 17637235 intergenic not near genes chr2L 17637306 intergenic not near genes chr2L_4_17635001 chr2L_17635001 RAL-142 403 chr2L 17795988 17796043 chr2L 17796103 17796133 15 106 4.5 2.0 3.2 3.6 145 chr2L 17795988 intron CadN2 - chr2L 17796060 intron CadN2 - chr2L 17796133 intron CadN2 - chr2L_15_17795001 chr2L_17795001 RAL-142 404 chr2L 17819898 17819935 chr2L 17825126 17825172 copia 12 5230 8.5 5.0 6.8 1.5 5274 chr2L 17819898 intron CadN2 - chr2L 17822535 intron CadN2 - chr2L 17825172 intron CadN2 - chr2L_12_17820001 chr2L_17820001 RAL-142 405 chr2L 17880564 17880622 chr2L 17880711 17880737 6 138 2.0 0.5 1.2 2.7 173 chr2L 17880564 intergenic not near genes chr2L 17880650 intergenic not near genes chr2L 17880737 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-142 406 chr2L 17951927 17951974 chr2L 17953417 17953470 hobo 21 1496 4.0 3.0 3.5 4.7 1543 chr2L 17951927 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953470 intergenic not near genes chr2L_21_17950001 chr2L_17950001 RAL-142 407 chr2L 18079785 18079807 chr2L 18079906 18079926 5 120 11.5 5.0 8.2 0.5 141 chr2L 18079785 intron Arr1 + chr2L 18079856 intron Arr1 + chr2L 18079926 intron Arr1 + chr2L_5_18075001 chr2L_18075001 RAL-142 408 chr2L 18079813 18079840 chr2L 18079904 18079943 10 109 5.5 4.5 5.0 1.7 130 chr2L 18079813 intron Arr1 + chr2L 18079878 intron Arr1 + chr2L 18079943 intron Arr1 + chr2L_10_18075001 chr2L_18075001 RAL-142 409 chr2L 18111206 18111240 chr2L 18111332 18111353 10 120 3.5 3.0 3.2 2.4 147 chr2L 18111206 intergenic not near genes chr2L 18111280 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_10_18110001 chr2L_18110001 RAL-142 410 chr2L 18189046 18189047 chr2L 18189960 18189988 4 926 1.5 3.5 2.5 1.1 942 chr2L 18189046 intron CG42750 - chr2L 18189517 intron CG42750 - chr2L 18189988 intron CG42750 - chr2L_4_18185001 chr2L_18185001 RAL-142 411 chr2L 18274019 18274071 chr2L 18274129 18274145 14 114 2.5 2.5 2.5 4.0 126 chr2L 18274019 intron CG42750 - chr2L 18274082 intron CG42750 - chr2L 18274145 intron CG42750 - chr2L_14_18270001 chr2L_18270001 RAL-142 412 chr2L 18291502 18291528 chr2L 18291625 18291661 6 130 5.0 0.0 2.5 1.7 159 chr2L 18291502 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291582 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291661 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_6_18290001 chr2L_18290001 RAL-142 413 chr2L 18303937 18304002 chr2L 18304063 18304128 16 121 3.5 2.5 3.0 4.0 191 chr2L 18303937 intergenic not near genes chr2L 18304032 intergenic not near genes chr2L 18304128 intergenic not near genes chr2L_16_18300001 chr2L_18300001 RAL-142 414 chr2L 18408002 18408051 chr2L 18412814 18412878 Doc 5 4816 3.5 0.0 1.8 1.8 4876 chr2L 18408002 intergenic not near genes chr2L 18410440 intergenic not near genes chr2L 18412878 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-142 415 chr2L 18442344 18442370 chr2L 18442438 18442468 8 103 1.5 7.0 4.2 1.5 124 chr2L 18442344 3` UTR RpS26 - chr2L 18442406 3` UTR RpS26 - chr2L 18442468 3` UTR RpS26 - chr2L_8_18440001 chr2L_18440001 RAL-142 416 chr2L 18449364 18449413 chr2L 18449493 18449549 12 131 5.5 6.0 5.8 1.8 185 chr2L 18449364 intergenic bsf -,ncm - chr2L 18449456 intergenic bsf -,ncm - chr2L 18449549 3` UTR bsf - chr2L_12_18445001 chr2L_18445001 RAL-142 417 chr2L 18464753 18464812 chr2L 18464870 18464930 12 115 2.5 3.5 3.0 3.0 177 chr2L 18464753 intron let-7-C + chr2L 18464842 intron let-7-C + chr2L 18464930 intron let-7-C + chr2L_12_18460001 chr2L_18460001 RAL-142 418 chr2L 18538544 18538563 chr2L 18538661 18538680 7 117 0.0 7.0 3.5 1.6 136 chr2L 18538544 intron Pde11 - chr2L 18538612 intron Pde11 - chr2L 18538680 intron Pde11 - chr2L_7_18535001 chr2L_18535001 RAL-142 419 chr2L 18538566 18538596 chr2L 18538656 18538707 8 108 0.0 7.0 3.5 1.8 141 chr2L 18538566 intron Pde11 - chr2L 18538636 intron Pde11 - chr2L 18538707 intron Pde11 - chr2L_8_18535001 chr2L_18535001 RAL-142 420 chr2L 16217660 16217661 chr2L 18622718 18622719 4 2405058 9.0 22.0 15.5 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-142 421 chr2L 18628080 18628097 chr2L 18628285 18628313 4 223 3.0 3.0 3.0 1.0 233 chr2L 18628080 intron MESR3 + chr2L 18628196 intron MESR3 + chr2L 18628313 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-142 422 chr2L 18741900 18741924 chr2L 18741995 18742018 4 98 39.5 32.5 36.0 0.1 118 chr2L 18741900 intergenic not near genes chr2L 18741959 intergenic not near genes chr2L 18742018 intergenic not near genes chr2L_4_18740001 chr2L_18740001 RAL-142 423 chr2L 18811383 18811438 chr2L 18811500 18811555 12 115 6.5 0.5 3.5 2.7 172 chr2L 18811383 intergenic CG10570 -,CG42502 - chr2L 18811469 intergenic CG10570 -,CG42502 - chr2L 18811555 intergenic not near genes chr2L_12_18810001 chr2L_18810001 RAL-142 424 chr2L 18812533 18812581 chr2L 18812821 18812864 17 286 1.5 4.0 2.8 4.5 331 chr2L 18812533 intergenic CG17325 +,CG42305 + chr2L 18812698 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812864 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_17_18810001 chr2L_18810001 RAL-142 425 chr2L 18883832 18883877 chr2L 18883938 18883988 15 104 7.5 8.0 7.8 1.7 156 chr2L 18883832 intergenic not near genes chr2L 18883910 intergenic not near genes chr2L 18883988 intergenic not near genes chr2L_15_18880001 chr2L_18880001 RAL-142 426 chr2L 18898387 18898427 chr2L 18898478 18898497 10 101 3.0 0.5 1.8 3.6 110 chr2L 18898387 intergenic not near genes chr2L 18898442 intergenic not near genes chr2L 18898497 intergenic not near genes chr2L_10_18895001 chr2L_18895001 RAL-142 427 chr2L 18955255 18955266 chr2L 18955413 18955424 6 158 0.0 9.5 4.8 1.0 169 chr2L 18955255 intergenic CG10623 -,CR44741 + chr2L 18955340 intergenic CG10623 -,CR44741 + chr2L 18955424 intergenic CG10623 -,CR44741 + chr2L_6_18955001 chr2L_18955001 RAL-142 428 chr2L 19024096 19024097 chr2L 21768291 21768293 17 2744195 29.5 26.0 27.8 0.6 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_17_20395001 chr2L_20395001 RAL-142 429 chr2L 19122750 19122805 chr2L 19122849 19122901 24 102 11.0 7.5 9.2 2.4 151 chr2L 19122750 exon l(2)37Cc - chr2L 19122826 intron l(2)37Cc - chr2L 19122901 intron l(2)37Cc - chr2L_24_19120001 chr2L_19120001 RAL-142 430 chr2L 19147339 19147401 chr2L 19154408 19154454 297 8 7060 1.0 2.5 1.8 2.9 7115 chr2L 19147339 intron brat + chr2L 19150896 intron brat + chr2L 19154454 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-142 431 chr2L 19182978 19182984 chr2L 19183080 19183093 6 104 10.0 9.0 9.5 0.6 115 chr2L 19182978 intergenic CR17567 -,CG42688 - chr2L 19183036 intergenic CR17567 -,CG42688 - chr2L 19183093 3` UTR CR17567 - chr2L_6_19180001 chr2L_19180001 RAL-142 432 chr2L 19182988 19183006 chr2L 19183057 19183101 10 98 6.0 3.5 4.8 1.7 113 chr2L 19182988 intergenic CR17567 -,CG42688 - chr2L 19183044 intergenic CR17567 -,CG42688 - chr2L 19183101 3` UTR CR17567 - chr2L_10_19180001 chr2L_19180001 RAL-142 433 chr2L 19183312 19183370 chr2L 19183422 19183467 34 110 4.5 5.5 5.0 5.7 155 chr2L 19183312 3` UTR CR17567 - chr2L 19183390 intron CR17567 - chr2L 19183467 intron CR17567 - chr2L_34_19180001 chr2L_19180001 RAL-142 434 chr2L 19345025 19345038 chr2L 19357237 19357267 blood 5 12224 1.0 5.5 3.2 1.2 12242 chr2L 19345025 intron dnt - chr2L 19351146 intron dnt - chr2L 19357267 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-142 435 chr2L 19357535 19357567 chr2L 19357657 19357692 7 122 5.0 3.0 4.0 1.4 157 chr2L 19357535 intron dnt - chr2L 19357614 intron dnt - chr2L 19357692 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-142 436 chr2L 19361841 19361907 chr2L 19361963 19362014 12 117 5.5 5.0 5.2 1.9 173 chr2L 19361841 intron dnt - chr2L 19361928 intron dnt - chr2L 19362014 intron dnt - chr2L_12_19360001 chr2L_19360001 RAL-142 437 chr2L 19374468 19374518 chr2L 19374601 19374661 10 132 3.0 2.0 2.5 2.9 193 chr2L 19374468 intergenic not near genes chr2L 19374564 intergenic not near genes chr2L 19374661 intergenic not near genes chr2L_10_19370001 chr2L_19370001 RAL-142 438 chr2L 19380484 19380522 chr2L 19380588 19380625 10 104 3.5 3.0 3.2 2.4 141 chr2L 19380484 intergenic CG17350 + chr2L 19380554 intergenic CG17350 + chr2L 19380625 intergenic CG17350 + chr2L_10_19380001 chr2L_19380001 RAL-142 439 chr2L 19441031 19441068 chr2L 19441142 19441170 9 101 9.0 3.0 6.0 1.3 139 chr2L 19441031 intron CG10237 - chr2L 19441100 intron CG10237 - chr2L 19441170 5` UTR CG10237 - chr2L_9_19440001 chr2L_19440001 RAL-142 440 chr2L 19566120 19566133 chr2L 19566215 19566234 4 101 5.0 3.5 4.2 0.8 114 chr2L 19566120 5` UTR CG13077 + chr2L 19566177 exon CG13077 + chr2L 19566234 exon CG13077 + chr2L_4_19565001 chr2L_19565001 RAL-142 441 chr2L 19566134 19566149 chr2L 19566210 19566225 5 78 4.5 4.0 4.2 1.0 91 chr2L 19566134 5` UTR CG13077 + chr2L 19566180 exon CG13077 + chr2L 19566225 exon CG13077 + chr2L_5_19565001 chr2L_19565001 RAL-142 442 chr2L 19566151 19566161 chr2L 19566209 19566241 4 72 4.5 3.5 4.0 0.8 90 chr2L 19566151 exon CG13077 + chr2L 19566196 exon CG13077 + chr2L 19566241 exon CG13077 + chr2L_4_19565001 chr2L_19565001 RAL-142 443 chr2L 19605554 19605558 chr2L 19605606 19605648 4 80 2.5 5.0 3.8 0.8 94 chr2L 19605554 intron Lar + chr2L 19605601 intron Lar + chr2L 19605648 intron Lar + chr2L_4_19605001 chr2L_19605001 RAL-142 444 chr2L 19620077 19620114 chr2L 19621086 19621127 jockey 4 1013 4.5 2.0 3.2 1.0 1050 chr2L 19620077 intron Lar + chr2L 19620602 intron Lar + chr2L 19621127 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-142 445 chr2L 19652557 19652602 chr2L 19674013 19674048 opus 9 21454 2.5 7.0 4.8 1.6 21491 chr2L 19652557 intron Lar + chr2L 19663302 intron Lar + chr2L 19674048 intron Lar + chr2L_9_19660001 chr2L_19660001 RAL-142 446 chr2L 19703512 19703539 chr2L 19712681 19712710 roo 6 9167 12.0 4.5 8.2 0.7 9198 chr2L 19703512 intron Lar + chr2L 19708111 intron Lar + chr2L 19712710 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-142 447 chr2L 19703540 19703562 chr2L 19712676 19712733 roo 4 9157 7.0 4.0 5.5 0.6 9193 chr2L 19703540 intron Lar + chr2L 19708136 intron Lar + chr2L 19712733 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-142 448 chr2L 19737352 19737383 chr2L 19740823 19740845 1360 5 3472 0.5 2.0 1.2 2.3 3493 chr2L 19737352 intergenic Nf-YB + chr2L 19739098 intergenic not near genes chr2L 19740845 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-142 449 chr2L 19762790 19762836 chr2L 19763052 19763098 pogo 27 269 5.5 8.0 6.8 3.5 308 chr2L 19762790 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763098 intron fbp - chr2L_27_19760001 chr2L_19760001 RAL-142 450 chr2L 19776642 19776656 chr2L 19776740 19776759 6 101 15.5 3.0 9.2 0.6 117 chr2L 19776642 3` UTR CdGAPr - chr2L 19776700 3` UTR CdGAPr - chr2L 19776759 3` UTR CdGAPr - chr2L_6_19775001 chr2L_19775001 RAL-142 451 chr2L 19801133 19801174 chr2L 19801438 19801449 16 291 9.0 8.5 8.8 1.6 316 chr2L 19801133 intron sick + chr2L 19801291 intron sick + chr2L 19801449 intron sick + chr2L_16_19800001 chr2L_19800001 RAL-142 452 chr2L 19801178 19801183 chr2L 19801436 19801459 4 278 7.0 8.0 7.5 0.5 281 chr2L 19801178 intron sick + chr2L 19801318 intron sick + chr2L 19801459 intron sick + chr2L_4_19800001 chr2L_19800001 RAL-142 453 chr2L 19824392 19824422 chr2L 19824510 19824540 6 117 4.5 6.0 5.2 1.0 148 chr2L 19824392 intron sick + chr2L 19824466 intron sick + chr2L 19824540 intron sick + chr2L_6_19820001 chr2L_19820001 RAL-142 454 chr2L 19837262 19837303 chr2L 19837362 19837395 6 100 3.0 0.5 1.8 2.1 133 chr2L 19837262 intron sick + chr2L 19837328 intron sick + chr2L 19837395 intron sick + chr2L_6_19835001 chr2L_19835001 RAL-142 455 chr2L 19854683 19854743 chr2L 19854804 19854859 6 100 1.5 1.0 1.2 2.7 176 chr2L 19854683 intron sick + chr2L 19854771 intron sick + chr2L 19854859 intron sick + chr2L_6_19850001 chr2L_19850001 RAL-142 456 chr2L 19913040 19913082 chr2L 19913521 19913545 5 475 4.5 0.0 2.2 1.6 505 chr2L 19913040 intron,3` UTR sick +,Victoria - chr2L 19913292 intron,exon sick +,Victoria - chr2L 19913545 intron sick + chr2L_5_19910001 chr2L_19910001 RAL-142 457 chr2L 19950951 19950977 chr2L 19951418 19951436 6 471 4.5 6.0 5.2 1.0 485 chr2L 19950951 intron sick + chr2L 19951194 intron sick + chr2L 19951436 intron sick + chr2L_6_19950001 chr2L_19950001 RAL-142 458 chr2L 20005845 20005896 chr2L 20010956 20011007 flea 6 5104 1.5 2.0 1.8 2.1 5162 chr2L 20005845 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20011007 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-142 459 chr2L 20014093 20014150 chr2L 20014290 20014324 7 180 7.5 3.0 5.2 1.1 231 chr2L 20014093 intron CG43861 - chr2L 20014208 intron CG43861 - chr2L 20014324 intron CG43861 - chr2L_7_20010001 chr2L_20010001 RAL-142 460 chr2L 20036502 20036555 chr2L 20036621 20036674 7 118 1.5 1.5 1.5 2.8 172 chr2L 20036502 intron sNPF + chr2L 20036588 intron sNPF + chr2L 20036674 intron sNPF + chr2L_7_20035001 chr2L_20035001 RAL-142 461 chr2L 20079495 20079548 chr2L 20079639 20079653 12 144 4.5 2.0 3.2 2.9 158 chr2L 20079495 intron,intron neb +,fok - chr2L 20079574 intron,intron neb +,fok - chr2L 20079653 intron,intron neb +,fok - chr2L_12_20075001 chr2L_20075001 RAL-142 462 chr2L 20085441 20085488 chr2L 20085568 20085588 12 111 1.0 5.0 3.0 3.0 147 chr2L 20085441 intron neb + chr2L 20085514 intron neb + chr2L 20085588 intron neb + chr2L_12_20085001 chr2L_20085001 RAL-142 463 chr2L 20085491 20085497 chr2L 20085564 20085586 5 93 1.0 5.0 3.0 1.2 95 chr2L 20085491 intron neb + chr2L 20085538 intron neb + chr2L 20085586 intron neb + chr2L_5_20085001 chr2L_20085001 RAL-142 464 chr2L 20087245 20087270 chr2L 20087361 20087401 12 124 4.5 5.0 4.8 2.1 156 chr2L 20087245 intron neb + chr2L 20087323 intron neb + chr2L 20087401 intron neb + chr2L_12_20085001 chr2L_20085001 RAL-142 465 chr2L 20115577 20115588 chr2L 20115700 20115710 4 123 0.0 4.0 2.0 1.3 133 chr2L 20115577 intergenic not near genes chr2L 20115644 intergenic not near genes chr2L 20115710 intergenic not near genes chr2L_4_20115001 chr2L_20115001 RAL-142 466 chr2L 20124297 20124354 chr2L 20124410 20124464 5 112 0.5 0.0 0.2 4.2 167 chr2L 20124297 intergenic not near genes chr2L 20124380 intergenic not near genes chr2L 20124464 intergenic not near genes chr2L_5_20120001 chr2L_20120001 RAL-142 467 chr2L 20269576 20269632 chr2L 20269832 20269876 18 246 5.0 6.0 5.5 2.8 300 chr2L 20269576 intergenic not near genes chr2L 20269726 intergenic not near genes chr2L 20269876 intergenic not near genes chr2L_18_20265001 chr2L_20265001 RAL-142 468 chr2L 20271233 20271253 chr2L 20271348 20271371 6 116 11.5 5.5 8.5 0.6 138 chr2L 20271233 intergenic not near genes chr2L 20271302 intergenic not near genes chr2L 20271371 intergenic not near genes chr2L_6_20270001 chr2L_20270001 RAL-142 469 chr2L 20271265 20271268 chr2L 20271346 20271375 4 94 9.0 5.0 7.0 0.5 110 chr2L 20271265 intergenic not near genes chr2L 20271320 intergenic not near genes chr2L 20271375 intergenic not near genes chr2L_4_20270001 chr2L_20270001 RAL-142 470 chr2L 20272101 20272127 chr2L 20282827 20282868 copia 8 10736 5.0 9.0 7.0 1.0 10767 chr2L 20272101 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282868 intergenic not near genes chr2L_8_20275001 chr2L_20275001 RAL-142 471 chr2L 20272131 20272142 chr2L 20282822 20282883 copia 10 10726 3.5 6.0 4.8 1.7 10752 chr2L 20272131 intergenic not near genes chr2L 20277507 intergenic not near genes chr2L 20282883 intergenic not near genes chr2L_10_20275001 chr2L_20275001 RAL-142 472 chr2L 20298807 20298853 chr2L 20298910 20298968 10 113 2.0 1.5 1.8 3.6 161 chr2L 20298807 intergenic not near genes chr2L 20298888 intergenic not near genes chr2L 20298968 intergenic not near genes chr2L_10_20295001 chr2L_20295001 RAL-142 473 chr2L 20302966 20302989 chr2L 20303091 20303114 4 123 7.5 0.5 4.0 0.8 148 chr2L 20302966 intergenic not near genes chr2L 20303040 intergenic not near genes chr2L 20303114 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-142 474 chr2L 20303165 20303181 chr2L 20310654 20310682 blood 7 7497 1.5 7.5 4.5 1.3 7517 chr2L 20303165 intergenic not near genes chr2L 20306924 intergenic not near genes chr2L 20310682 intergenic not near genes chr2L_7_20305001 chr2L_20305001 RAL-142 475 chr2L 20310848 20310918 chr2L 20310963 20311021 12 105 0.5 3.5 2.0 4.0 173 chr2L 20310848 intergenic spir + chr2L 20310934 intergenic spir + chr2L 20311021 intergenic spir + chr2L_12_20310001 chr2L_20310001 RAL-142 476 chr2L 20312508 20312566 chr2L 20312620 20312685 6 114 4.0 1.0 2.5 1.7 177 chr2L 20312508 intron spir + chr2L 20312596 intron spir + chr2L 20312685 intron spir + chr2L_6_20310001 chr2L_20310001 RAL-142 477 chr2L 20372199 20372238 chr2L 20372472 20372514 pogo 9 274 1.0 4.0 2.5 2.6 315 chr2L 20372199 intergenic Ugt37a1 - chr2L 20372356 intergenic Ugt37a1 - chr2L 20372514 exon Ugt37a1 - chr2L_9_20370001 chr2L_20370001 RAL-142 478 chr2L 20427589 20427624 chr2L 20427702 20427718 17 126 5.0 5.0 5.0 2.8 129 chr2L 20427589 intergenic not near genes chr2L 20427654 intergenic not near genes chr2L 20427718 intergenic not near genes chr2L_17_20425001 chr2L_20425001 RAL-142 479 chr2L 20498654 20498707 chr2L 20498788 20498841 13 127 5.0 5.0 5.0 2.2 187 chr2L 20498654 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498841 intergenic not near genes chr2L_13_20495001 chr2L_20495001 RAL-142 480 chr2L 20576197 20576231 chr2L 20583691 20583694 blood 5 7493 8.0 4.5 6.2 0.7 7497 chr2L 20576197 intergenic CR45347 + chr2L 20579946 intergenic not near genes chr2L 20583694 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-142 481 chr2L 20576240 20576249 chr2L 20583685 20583752 blood 5 7481 6.5 4.5 5.5 0.8 7512 chr2L 20576240 intergenic not near genes chr2L 20579996 intergenic not near genes chr2L 20583752 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-142 482 chr2L 20611202 20611261 chr2L 20611324 20611370 10 107 0.0 3.5 1.8 3.6 168 chr2L 20611202 intron CR44909 - chr2L 20611286 intron CR44909 - chr2L 20611370 intron CR44909 - chr2L_10_20610001 chr2L_20610001 RAL-142 483 chr2L 20639468 20639532 chr2L 20639776 20639823 INE-1 20 296 7.5 4.5 6.0 2.9 355 chr2L 20639468 intergenic not near genes chr2L 20639646 intergenic CG31680 + chr2L 20639823 intergenic CG31680 + chr2L_20_20635001 chr2L_20635001 RAL-142 484 chr2L 20643313 20643330 chr2L 20643480 20643497 7 167 3.0 8.0 5.5 1.1 184 chr2L 20643313 intergenic phr6-4 -,CG17470 - chr2L 20643405 3` UTR phr6-4 - chr2L 20643497 3` UTR phr6-4 - chr2L_7_20640001 chr2L_20640001 RAL-142 485 chr2L 20668656 20668723 chr2L 20668767 20668771 22 100 10.0 10.0 10.0 2.0 115 chr2L 20668656 intron CG31678 - chr2L 20668714 intron CG31678 - chr2L 20668771 intron CG31678 - chr2L_22_20665001 chr2L_20665001 RAL-142 486 chr2L 20674800 20674863 chr2L 20674920 20674960 9 103 3.0 0.0 1.5 3.6 160 chr2L 20674800 intron CG31678 - chr2L 20674880 intron CG31678 - chr2L 20674960 intron CG31678 - chr2L_9_20670001 chr2L_20670001 RAL-142 487 chr2L 20695759 20695827 chr2L 20695882 20695950 28 117 5.5 3.5 4.5 5.1 191 chr2L 20695759 intron Hr38 - chr2L 20695854 intron Hr38 - chr2L 20695950 intron Hr38 - chr2L_28_20695001 chr2L_20695001 RAL-142 488 chr2L 20801674 20801693 chr2L 20801763 20801827 5 111 3.0 1.0 2.0 1.7 153 chr2L 20801674 intron CG9328 + chr2L 20801750 intron CG9328 + chr2L 20801827 intron CG9328 + chr2L_5_20800001 chr2L_20800001 RAL-142 489 chr2L 20826501 20826545 chr2L 20826599 20826649 18 103 6.5 7.0 6.8 2.3 148 chr2L 20826501 intron CG9331 + chr2L 20826575 intron CG9331 + chr2L 20826649 exon CG9331 + chr2L_18_20825001 chr2L_20825001 RAL-142 490 chr2L 20835781 20835823 chr2L 20836533 20836565 Quasimodo 12 746 8.0 5.0 6.5 1.6 784 chr2L 20835781 5` UTR Oseg5 - chr2L 20836173 intergenic Oseg5 -,Spn38F - chr2L 20836565 intergenic Spn38F - chr2L_12_20835001 chr2L_20835001 RAL-142 491 chr2L 20840012 20840057 chr2L 20840246 20840303 5 229 2.0 4.0 3.0 1.2 291 chr2L 20840012 intergenic not near genes chr2L 20840158 intergenic not near genes chr2L 20840303 intergenic CG31676 + chr2L_5_20840001 chr2L_20840001 RAL-142 492 chr2L 20846753 20846788 chr2L 20846846 20846890 10 102 7.5 2.0 4.8 1.7 137 chr2L 20846753 intron CG31676 + chr2L 20846822 intron CG31676 + chr2L 20846890 intron CG31676 + chr2L_10_20845001 chr2L_20845001 RAL-142 493 chr2L 20862581 20862592 chr2L 20862713 20862724 6 132 0.0 12.5 6.2 0.8 143 chr2L 20862581 intergenic not near genes chr2L 20862652 intergenic not near genes chr2L 20862724 intergenic not near genes chr2L_6_20860001 chr2L_20860001 RAL-142 494 chr2L 20911002 20911055 chr2L 20911103 20911145 12 101 5.0 2.5 3.8 2.5 143 chr2L 20911002 intron,intron CG43739 -,sky - chr2L 20911074 intron,intron CG43739 -,sky - chr2L 20911145 intron,intron CG43739 -,sky - chr2L_12_20910001 chr2L_20910001 RAL-142 495 chr2L 20946911 20946961 chr2L 20947033 20947077 10 110 5.0 3.0 4.0 2.0 166 chr2L 20946911 intergenic CR44606 - chr2L 20946994 intergenic CR44606 - chr2L 20947077 intergenic CR44606 - chr2L_10_20945001 chr2L_20945001 RAL-142 496 chr2L 20967046 20967105 chr2L 20967167 20967222 21 120 6.0 3.5 4.8 3.6 176 chr2L 20967046 3` UTR CG42238 - chr2L 20967134 3` UTR CG42238 - chr2L 20967222 3` UTR CG42238 - chr2L_21_20965001 chr2L_20965001 RAL-142 497 chr2L 20991017 20991055 chr2L 20991120 20991153 8 108 2.0 2.5 2.2 2.5 136 chr2L 20991017 intron CG42238 - chr2L 20991085 intron CG42238 - chr2L 20991153 intron CG42238 - chr2L_8_20990001 chr2L_20990001 RAL-142 498 chr2L 21020263 21020291 chr2L 21023954 21024003 NOF 6 3694 2.0 1.5 1.8 2.1 3740 chr2L 21020263 intron CG42238 - chr2L 21022133 intron CG42238 - chr2L 21024003 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-142 499 chr2L 21041120 21041150 chr2L 21049416 21049432 Tirant 6 8291 0.5 4.0 2.2 1.9 8312 chr2L 21041120 intron CG42238 - chr2L 21045276 intron CG42238 - chr2L 21049432 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-142 500 chr2L 21074898 21074941 chr2L 21075012 21075056 12 122 2.0 3.5 2.8 3.2 158 chr2L 21074898 intergenic not near genes chr2L 21074977 intergenic tadr + chr2L 21075056 intergenic tadr + chr2L_12_21070001 chr2L_21070001 RAL-142 501 chr2L 21086420 21086455 chr2L 21086544 21086598 9 138 1.5 1.5 1.5 3.6 178 chr2L 21086420 5` UTR CG33509 - chr2L 21086509 intergenic CG33509 -,ppk13 - chr2L 21086598 intergenic CG33509 -,ppk13 - chr2L_9_21085001 chr2L_21085001 RAL-142 502 chr2L 21088903 21088946 chr2L 21089018 21089064 7 109 1.0 1.5 1.2 3.2 161 chr2L 21088903 intergenic ppk13 -,CG9259 + chr2L 21088984 intergenic ppk13 -,CG9259 + chr2L 21089064 intergenic CG9259 +,ppk13 - chr2L_7_21085001 chr2L_21085001 RAL-142 503 chr2L 21158852 21158907 chr2L 21158964 21158993 7 102 6.0 4.5 5.2 1.1 141 chr2L 21158852 intergenic CG9248 +,CG9249 - chr2L 21158922 5` UTR CG9248 + chr2L 21158993 5` UTR CG9248 + chr2L_7_21155001 chr2L_21155001 RAL-142 504 chr2L 21245264 21245293 chr2L 21245525 21245539 4 252 0.0 2.0 1.0 2.0 275 chr2L 21245264 intron Hr39 + chr2L 21245402 intron Hr39 + chr2L 21245539 intron Hr39 + chr2L_4_21245001 chr2L_21245001 RAL-142 505 chr2L 21286585 21286608 chr2L 21286684 21286720 7 107 6.0 2.5 4.2 1.3 135 chr2L 21286585 exon Mio - chr2L 21286652 intron Mio - chr2L 21286720 intron Mio - chr2L_7_21285001 chr2L_21285001 RAL-142 506 chr2L 21347534 21347571 chr2L 21355031 21355078 blood 10 7502 1.5 4.0 2.8 2.6 7544 chr2L 21347534 intron Tsp39D + chr2L 21351306 intron Tsp39D + chr2L 21355078 intron Tsp39D + chr2L_10_21350001 chr2L_21350001 RAL-142 507 chr2L 21355577 21355638 chr2L 21355757 21355784 9 174 1.5 2.0 1.8 3.2 207 chr2L 21355577 exon Tsp39D + chr2L 21355680 intron Tsp39D + chr2L 21355784 intron Tsp39D + chr2L_9_21355001 chr2L_21355001 RAL-142 508 chr2L 21665637 21665680 chr2L 21665755 21665794 12 116 2.5 4.0 3.2 2.9 157 chr2L 21665637 intron CG2225 - chr2L 21665716 intron CG2225 - chr2L 21665794 intron CG2225 - chr2L_12_21665001 chr2L_21665001 RAL-142 509 chr2L 21691797 21691827 chr2L 21698302 21698331 Burdock 8 6504 8.0 0.5 4.2 1.5 6534 chr2L 21691797 intron CG31619 + chr2L 21695064 intron CG31619 + chr2L 21698331 intron CG31619 + chr2L_8_21695001 chr2L_21695001 RAL-142 510 chr2L 21757704 21757764 chr2L 21757815 21757875 6 110 3.0 5.5 4.2 1.2 171 chr2L 21757704 intergenic step -,CG1416 + chr2L 21757790 intergenic CG1416 +,step - chr2L 21757875 intergenic CG1416 +,step - chr2L_6_21755001 chr2L_21755001 RAL-142 511 chr2L 21819319 21819321 chr2L 21819427 21819429 4 113 13.0 7.5 10.2 0.4 110 chr2L 21819319 intergenic CR44786 + chr2L 21819374 intergenic CR44786 + chr2L 21819429 intergenic CR44786 + chr2L_4_21815001 chr2L_21815001 RAL-142 512 chr2L 21819325 21819360 chr2L 21819423 21819449 9 101 6.0 6.5 6.2 1.2 124 chr2L 21819325 intergenic CR44786 + chr2L 21819387 intergenic CR44786 + chr2L 21819449 intergenic CR44786 + chr2L_9_21815001 chr2L_21815001 RAL-142 513 chr2L 21852355 21852402 chr2L 21852705 21852737 8 348 3.5 4.5 4.0 1.6 382 chr2L 21852355 intergenic not near genes chr2L 21852546 intergenic not near genes chr2L 21852737 intergenic not near genes chr2L_8_21850001 chr2L_21850001 RAL-142 514 chr2L 21855450 21855511 chr2L 21855563 21855623 9 110 3.0 3.5 3.2 2.1 173 chr2L 21855450 intron CR44917 + chr2L 21855536 intron CR44917 + chr2L 21855623 intron CR44917 + chr2L_9_21855001 chr2L_21855001 RAL-142 515 chr2L 21859287 21859310 chr2L 21859402 21859409 5 105 10.0 4.0 7.0 0.6 122 chr2L 21859287 intron CR44917 + chr2L 21859348 intron CR44917 + chr2L 21859409 intron CR44917 + chr2L_5_21855001 chr2L_21855001 RAL-142 516 chr2L 21859312 21859352 chr2L 21859400 21859441 19 98 5.5 4.0 4.8 3.3 129 chr2L 21859312 intron CR44917 + chr2L 21859376 intron CR44917 + chr2L 21859441 intron CR44917 + chr2L_19_21855001 chr2L_21855001 RAL-142 517 chr2L 22197892 22197909 chr2L 22198096 22198123 9 220 1.5 3.5 2.5 2.6 231 chr2L 22197892 intron Ir40a - chr2L 22198008 intron Ir40a - chr2L 22198123 intron Ir40a - chr2L_9_22195001 chr2L_22195001 RAL-142 518 chr2L 22212102 22212160 chr2L 22212684 22212731 6 577 1.0 1.5 1.2 2.7 629 chr2L 22212102 intron Ir40a - chr2L 22212416 intron Ir40a - chr2L 22212731 exon Ir40a - chr2L_6_22210001 chr2L_22210001 RAL-142 519 chr2L 22258596 22258633 chr2L 22260755 22260790 G6 4 2158 3.0 11.5 7.2 0.5 2194 chr2L 22258596 intergenic Tif-IA + chr2L 22259693 intergenic not near genes chr2L 22260790 intergenic not near genes chr2L_4_22255001 chr2L_22255001 RAL-142 520 chr2L 22776408 22776442 chr2L 22778232 22778265 S-element 4 1824 1.5 1.0 1.2 1.8 1857 chr2L 22776408 intergenic not near genes chr2L 22777336 intergenic not near genes chr2L 22778265 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-142 521 chr2R 1516578 1516601 chr2R 1521341 1521364 1731 4 4763 2.5 3.0 2.8 1.1 4786 chr2R 1516578 exon Maf1 - chr2R 1518971 intron Maf1 - chr2R 1521364 5` UTR Maf1 - chr2R_4_1515001 chr2R_1515001 RAL-142 522 chr2R 2015107 2015163 chr2R 2015219 2015275 11 104 3.5 5.0 4.2 2.1 168 chr2R 2015107 intron CG17684 - chr2R 2015191 intron CG17684 - chr2R 2015275 intron CG17684 - chr2R_11_2015001 chr2R_2015001 RAL-142 523 chr2R 2110479 2110501 chr2R 2118065 2118094 17.6 6 7592 3.5 6.0 4.8 1.0 7615 chr2R 2110479 intron CG17684 - chr2R 2114286 intron CG17684 - chr2R 2118094 intron CG17684 - chr2R_6_2110001 chr2R_2110001 RAL-142 524 chr2R 2498964 2499002 chr2R 2508146 2508184 roo 7 9177 2.5 3.0 2.8 1.8 9220 chr2R 2498964 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508184 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-142 525 chr2R 3291923 3291927 chr2R 3915102 3915131 4 623192 5.0 6.5 5.8 0.6 623208 chr2R 3291923 intergenic not near genes chr2R 3603527 intergenic not near genes chr2R 3915131 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-142 526 chr2R 3293728 3293760 chr2R 3293820 3293837 5 95 1.0 0.5 0.8 2.8 109 chr2R 3293728 intergenic not near genes chr2R 3293782 intergenic not near genes chr2R 3293837 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-142 527 chr2R 3399238 3399247 chr2R 3399318 3399368 4 107 5.5 5.0 5.2 0.6 130 chr2R 3399238 intergenic not near genes chr2R 3399303 intergenic not near genes chr2R 3399368 intergenic not near genes chr2R_4_3395001 chr2R_3395001 RAL-142 528 chr2R 3587218 3587262 chr2R 3587327 3587374 6 112 3.5 10.0 6.8 0.8 156 chr2R 3587218 intergenic not near genes chr2R 3587296 intergenic not near genes chr2R 3587374 intergenic not near genes chr2R_6_3585001 chr2R_3585001 RAL-142 529 chr2R 4312950 4312982 chr2R 4313054 4313099 5 114 19.5 15.5 17.5 0.3 149 chr2R 4312950 intergenic not near genes chr2R 4313024 intergenic not near genes chr2R 4313099 intergenic not near genes chr2R_5_4310001 chr2R_4310001 RAL-142 530 chr2R 4783410 4783451 chr2R 4783496 4783524 5 98 7.0 8.0 7.5 0.6 114 chr2R 4783410 intergenic not near genes chr2R 4783467 intergenic not near genes chr2R 4783524 intergenic not near genes chr2R_5_4780001 chr2R_4780001 RAL-142 531 chr2R 4821196 4821242 chr2R 4821308 4821363 6 120 6.5 4.5 5.5 0.9 167 chr2R 4821196 intron CG17528 - chr2R 4821280 intron CG17528 - chr2R 4821363 intron CG17528 - chr2R_6_4820001 chr2R_4820001 RAL-142 532 chr2R 4838861 4838901 chr2R 4840396 4840453 transib2 6 1547 10.5 13.0 11.8 0.5 1592 chr2R 4838861 intergenic not near genes chr2R 4839657 intergenic not near genes chr2R 4840453 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-142 533 chr2R 4870728 4870742 chr2R 4871256 4871288 R1A1-element 5 534 20.5 12.5 16.5 0.3 560 chr2R 4870728 intergenic not near genes chr2R 4871008 intergenic not near genes chr2R 4871288 intergenic not near genes chr2R_5_4870001 chr2R_4870001 RAL-142 534 chr2R 5075959 5075997 chr2R 5076102 5076124 4 131 30.5 22.0 26.2 0.1 165 chr2R 5075959 intergenic not near genes chr2R 5076042 intergenic not near genes chr2R 5076124 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-142 535 chr2R 5082127 5082161 chr2R 5086785 5086804 4 4652 19.5 30.5 25.0 0.2 4677 chr2R 5082127 intergenic not near genes chr2R 5084466 intergenic not near genes chr2R 5086804 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-142 536 chr2R 5256737 5256785 chr2R 5256850 5256906 17 115 7.0 9.0 8.0 1.9 169 chr2R 5256737 intergenic not near genes chr2R 5256822 intergenic not near genes chr2R 5256906 intergenic not near genes chr2R_17_5255001 chr2R_5255001 RAL-142 537 chr2R 5258545 5258573 chr2R 5262247 5262291 S-element 5 3705 22.5 17.0 19.8 0.2 3746 chr2R 5258545 intergenic d4 + chr2R 5260418 intron d4 + chr2R 5262291 intron d4 + chr2R_5_5260001 chr2R_5260001 RAL-142 538 chr2R 5342799 5342855 chr2R 5342931 5342966 5 127 18.5 16.5 17.5 0.3 167 chr2R 5342799 intergenic not near genes chr2R 5342882 intergenic not near genes chr2R 5342966 intergenic not near genes chr2R_5_5340001 chr2R_5340001 RAL-142 539 chr2R 5410288 5410342 chr2R 5410478 5410515 4 186 2.0 1.0 1.5 1.6 227 chr2R 5410288 intergenic not near genes chr2R 5410402 intergenic not near genes chr2R 5410515 intergenic not near genes chr2R_4_5410001 chr2R_5410001 RAL-142 540 chr2R 5472425 5472446 chr2R 5472871 5472892 6 449 2.5 6.5 4.5 1.1 467 chr2R 5472425 intron CG30440 - chr2R 5472658 intron CG30440 - chr2R 5472892 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-142 541 chr2R 5475448 5475467 chr2R 5475722 5475763 5 291 1.0 6.0 3.5 1.1 315 chr2R 5475448 intron CG30440 - chr2R 5475606 intron CG30440 - chr2R 5475763 intron CG30440 - chr2R_5_5475001 chr2R_5475001 RAL-142 542 chr2R 5476317 5476371 chr2R 5476896 5476925 8 565 3.0 1.0 2.0 2.7 608 chr2R 5476317 intron CG30440 - chr2R 5476621 intron CG30440 - chr2R 5476925 intron CG30440 - chr2R_8_5475001 chr2R_5475001 RAL-142 543 chr2R 5581398 5581419 chr2R 5627632 5627634 4 46232 0.5 13.0 6.8 0.5 46236 chr2R 5581398 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627634 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-142 544 chr2R 5664275 5664306 chr2R 5664375 5664401 4 96 9.0 12.0 10.5 0.3 126 chr2R 5664275 5` UTR CR45472 + chr2R 5664338 intron CR45472 + chr2R 5664401 intron CR45472 + chr2R_4_5660001 chr2R_5660001 RAL-142 545 chr2R 5678299 5678344 chr2R 5678694 5678731 8 402 23.5 16.5 20.0 0.4 432 chr2R 5678299 intron scaf - chr2R 5678515 intron scaf - chr2R 5678731 intron scaf - chr2R_8_5675001 chr2R_5675001 RAL-142 546 chr2R 5700057 5700076 chr2R 5700163 5700182 4 114 5.0 8.0 6.5 0.5 125 chr2R 5700057 exon CG17337 + chr2R 5700120 3` UTR CG17337 + chr2R 5700182 3` UTR CG17337 + chr2R_4_5700001 chr2R_5700001 RAL-142 547 chr2R 5750103 5750130 chr2R 5750548 5750575 5 438 18.0 10.0 14.0 0.3 472 chr2R 5750103 intergenic not near genes chr2R 5750339 intergenic not near genes chr2R 5750575 intergenic not near genes chr2R_5_5750001 chr2R_5750001 RAL-142 548 chr2R 5750434 5750450 chr2R 5750551 5750577 7 118 9.0 11.0 10.0 0.6 143 chr2R 5750434 intergenic not near genes chr2R 5750506 intergenic not near genes chr2R 5750577 intergenic not near genes chr2R_7_5750001 chr2R_5750001 RAL-142 549 chr2R 5869265 5869295 chr2R 5874356 5874406 flea 9 5100 6.0 4.0 5.0 1.5 5141 chr2R 5869265 intergenic not near genes chr2R 5871836 intergenic not near genes chr2R 5874406 intergenic not near genes chr2R_9_5870001 chr2R_5870001 RAL-142 550 chr2R 5878893 5878910 chr2R 5879008 5879014 4 111 8.0 2.5 5.2 0.6 121 chr2R 5878893 intergenic CG44438 - chr2R 5878954 intergenic CG44438 - chr2R 5879014 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-142 551 chr2R 5878912 5878952 chr2R 5879006 5879052 9 104 2.5 2.5 2.5 2.6 140 chr2R 5878912 intergenic CG44438 - chr2R 5878982 intergenic CG44438 - chr2R 5879052 intergenic CG44438 - chr2R_9_5875001 chr2R_5875001 RAL-142 552 chr2R 5885219 5885373 chr2R 5885315 5885537 12 126 0.5 0.5 0.5 8.0 318 chr2R 5885219 5` UTR CR44125 + chr2R 5885378 5` UTR CR44125 + chr2R 5885537 5` UTR CR44125 + chr2R_12_5885001 chr2R_5885001 RAL-142 553 chr2R 6033418 6033472 chr2R 6033529 6033573 12 109 4.5 6.5 5.5 1.8 155 chr2R 6033418 intron SCAP - chr2R 6033496 intron SCAP - chr2R 6033573 intron SCAP - chr2R_12_6030001 chr2R_6030001 RAL-142 554 chr2R 6096707 6096752 chr2R 6101911 6101918 BS 8 5201 2.5 8.5 5.5 1.2 5211 chr2R 6096707 intron EcR - chr2R 6099312 intron EcR - chr2R 6101918 intron EcR - chr2R_8_6095001 chr2R_6095001 RAL-142 555 chr2R 6129293 6129356 chr2R 6129406 6129442 6 104 1.0 2.5 1.8 2.1 149 chr2R 6129293 intron EcR - chr2R 6129368 intron EcR - chr2R 6129442 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-142 556 chr2R 6151482 6151518 chr2R 6151593 6151615 7 107 5.5 4.5 5.0 1.2 133 chr2R 6151482 intron EcR - chr2R 6151548 intron EcR - chr2R 6151615 intron EcR - chr2R_7_6150001 chr2R_6150001 RAL-142 557 chr2R 6173061 6173111 chr2R 6173173 6173223 6 112 1.5 2.5 2.0 2.0 162 chr2R 6173061 intergenic not near genes chr2R 6173142 intergenic not near genes chr2R 6173223 intergenic Cyp6w1 + chr2R_6_6170001 chr2R_6170001 RAL-142 558 chr2R 6178649 6178711 chr2R 6178771 6178833 16 121 0.5 4.5 2.5 4.6 184 chr2R 6178649 intergenic not near genes chr2R 6178741 intergenic not near genes chr2R 6178833 intergenic not near genes chr2R_16_6175001 chr2R_6175001 RAL-142 559 chr2R 6194656 6194677 chr2R 6194769 6194791 7 115 6.5 3.5 5.0 1.2 135 chr2R 6194656 intron Ptr - chr2R 6194724 intron Ptr - chr2R 6194791 intron Ptr - chr2R_7_6190001 chr2R_6190001 RAL-142 560 chr2R 6194678 6194695 chr2R 6194768 6194813 4 108 4.5 3.5 4.0 0.8 135 chr2R 6194678 intron Ptr - chr2R 6194746 intron Ptr - chr2R 6194813 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-142 561 chr2R 6206759 6206799 chr2R 6206851 6206870 5 94 7.0 2.0 4.5 0.9 111 chr2R 6206759 intergenic CG17994 - chr2R 6206814 intergenic CG17994 - chr2R 6206870 intergenic CG17994 - chr2R_5_6205001 chr2R_6205001 RAL-142 562 chr2R 6530735 6530777 chr2R 6530850 6530892 23 113 9.0 6.0 7.5 2.7 157 chr2R 6530735 intron jing + chr2R 6530814 intron jing + chr2R 6530892 intron jing + chr2R_23_6530001 chr2R_6530001 RAL-142 563 chr2R 6530780 6530791 chr2R 6530849 6530900 7 104 6.0 5.5 5.8 1.0 120 chr2R 6530780 intron jing + chr2R 6530840 intron jing + chr2R 6530900 intron jing + chr2R_7_6530001 chr2R_6530001 RAL-142 564 chr2R 6579743 6579801 chr2R 6584864 6584922 flea 16 5119 5.5 6.5 6.0 2.3 5179 chr2R 6579743 intron jing + chr2R 6582332 intron jing + chr2R 6584922 intron jing + chr2R_16_6580001 chr2R_6580001 RAL-142 565 chr2R 6633188 6633227 chr2R 6633274 6633319 11 104 1.5 3.0 2.2 3.4 131 chr2R 6633188 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633319 intergenic Vha16-1 -,Trap1 - chr2R_11_6630001 chr2R_6630001 RAL-142 566 chr2R 6699557 6699612 chr2R 6699677 6699725 17 116 5.5 3.5 4.5 3.1 168 chr2R 6699557 intergenic Rab2 + chr2R 6699641 intergenic Rab2 + chr2R 6699725 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_17_6695001 chr2R_6695001 RAL-142 567 chr2R 6712566 6712594 chr2R 6712682 6712726 7 124 6.5 1.0 3.8 1.5 160 chr2R 6712566 intron,intron CG3409 -,CG45092 - chr2R 6712646 intron,intron CG3409 -,CG45092 - chr2R 6712726 intron,intron CG3409 -,CG45092 - chr2R_7_6710001 chr2R_6710001 RAL-142 568 chr2R 6846274 6846321 chr2R 6846386 6846409 9 108 0.0 4.5 2.2 2.8 135 chr2R 6846274 intergenic not near genes chr2R 6846342 intergenic not near genes chr2R 6846409 intergenic not near genes chr2R_9_6845001 chr2R_6845001 RAL-142 569 chr2R 6887505 6887555 chr2R 6887621 6887666 12 120 7.5 8.5 8.0 1.3 161 chr2R 6887505 intron Spn42De + chr2R 6887586 intron Spn42De + chr2R 6887666 intron Spn42De + chr2R_12_6885001 chr2R_6885001 RAL-142 570 chr2R 6952142 6952183 chr2R 6959750 6959767 opus 15 7612 4.0 4.0 4.0 3.0 7625 chr2R 6952142 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955954 intron,intron mim -,CheB42c - chr2R 6959767 intron,intron mim -,CheB42c - chr2R_15_6955001 chr2R_6955001 RAL-142 571 chr2R 7067980 7067991 chr2R 7068053 7068057 4 77 6.5 2.5 4.5 0.7 77 chr2R 7067980 intergenic CG12836 + chr2R 7068018 intergenic CG12836 + chr2R 7068057 intergenic CG12836 + chr2R_4_7065001 chr2R_7065001 RAL-142 572 chr2R 7099669 7099713 chr2R 7099780 7099824 19 104 5.0 4.5 4.8 3.3 155 chr2R 7099669 intron esn + chr2R 7099746 intron esn + chr2R 7099824 intron esn + chr2R_19_7095001 chr2R_7095001 RAL-142 573 chr2R 7120128 7120139 chr2R 7120262 7120273 6 134 11.0 8.5 9.8 0.6 145 chr2R 7120128 intron esn + chr2R 7120200 intron esn + chr2R 7120273 intron esn + chr2R_6_7120001 chr2R_7120001 RAL-142 574 chr2R 7120145 7120149 chr2R 7120243 7120283 5 126 11.0 7.5 9.2 0.5 138 chr2R 7120145 intron esn + chr2R 7120214 intron esn + chr2R 7120283 intron esn + chr2R_5_7120001 chr2R_7120001 RAL-142 575 chr2R 7160522 7160579 chr2R 7160635 7160692 13 109 6.5 3.5 5.0 2.2 170 chr2R 7160522 intron pk + chr2R 7160607 intron pk + chr2R 7160692 intron pk + chr2R_13_7160001 chr2R_7160001 RAL-142 576 chr2R 7171253 7171283 chr2R 7171354 7171399 19 115 5.0 7.0 6.0 2.7 146 chr2R 7171253 intron pk + chr2R 7171326 intron pk + chr2R 7171399 intron pk + chr2R_19_7170001 chr2R_7170001 RAL-142 577 chr2R 7196542 7196596 chr2R 7201352 7201384 F-element 14 4805 9.5 0.5 5.0 2.3 4842 chr2R 7196542 intron pk + chr2R 7198963 intron pk + chr2R 7201384 intron pk + chr2R_14_7195001 chr2R_7195001 RAL-142 578 chr2R 7209850 7209874 chr2R 7217629 7217669 roo 11 7790 0.0 5.0 2.5 3.1 7819 chr2R 7209850 intron pk + chr2R 7213760 intron pk + chr2R 7217669 intron pk + chr2R_11_7210001 chr2R_7210001 RAL-142 579 chr2R 7235804 7235842 chr2R 7240915 7240950 jockey 10 5115 6.0 2.5 4.2 1.9 5146 chr2R 7235804 intergenic not near genes chr2R 7238377 intergenic not near genes chr2R 7240950 intergenic not near genes chr2R_10_7235001 chr2R_7235001 RAL-142 580 chr2R 7253534 7253570 chr2R 7253862 7253903 13 333 3.5 2.0 2.8 3.4 369 chr2R 7253534 intergenic not near genes chr2R 7253718 intergenic not near genes chr2R 7253903 intergenic not near genes chr2R_13_7250001 chr2R_7250001 RAL-142 581 chr2R 7262188 7262218 chr2R 7269264 7269264 297 6 7065 1.0 4.5 2.8 1.6 7076 chr2R 7262188 intergenic not near genes chr2R 7265726 intergenic not near genes chr2R 7269264 intergenic not near genes chr2R_6_7265001 chr2R_7265001 RAL-142 582 chr2R 7269837 7269868 chr2R 7273931 7273960 7 4092 42.0 46.5 44.2 0.2 4123 chr2R 7269837 intergenic not near genes chr2R 7271898 intergenic Br140 - chr2R 7273960 exon Br140 - chr2R_7_7270001 chr2R_7270001 RAL-142 583 chr2R 7328113 7328134 chr2R 7328244 7328280 6 142 3.5 5.5 4.5 1.1 167 chr2R 7328113 intron,intron Dscam1 -,CR45129 + chr2R 7328196 intron,intron Dscam1 -,CR45129 + chr2R 7328280 intron,intron Dscam1 -,CR45129 + chr2R_6_7325001 chr2R_7325001 RAL-142 584 chr2R 7363859 7363895 chr2R 7364038 7364077 14 178 7.5 4.0 5.8 2.1 218 chr2R 7363859 intron Dscam1 - chr2R 7363968 intron Dscam1 - chr2R 7364077 intron Dscam1 - chr2R_14_7360001 chr2R_7360001 RAL-142 585 chr2R 7417868 7418167 chr2R 7417989 7418279 32 107 9.5 9.0 9.2 3.1 411 chr2R 7417868 intergenic not near genes chr2R 7418074 intergenic not near genes chr2R 7418279 intergenic not near genes chr2R_32_7415001 chr2R_7415001 RAL-142 586 chr2R 7434884 7434911 chr2R 7439200 7439236 Juan 13 4329 9.0 15.0 12.0 1.0 4352 chr2R 7434884 intergenic so + chr2R 7437060 intergenic not near genes chr2R 7439236 intergenic not near genes chr2R_13_7435001 chr2R_7435001 RAL-142 587 chr2R 7459257 7459293 chr2R 7459370 7459387 5 113 7.0 2.5 4.8 0.9 130 chr2R 7459257 intergenic Inos -,CG11141 - chr2R 7459322 intergenic CG11141 -,Inos - chr2R 7459387 intergenic CG11141 - chr2R_5_7455001 chr2R_7455001 RAL-142 588 chr2R 7608391 7608404 chr2R 7613615 7613641 I-element 4 5230 19.5 7.0 13.2 0.3 5250 chr2R 7608391 intron CG1358 - chr2R 7611016 intron CG1358 - chr2R 7613641 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-142 589 chr2R 7608411 7608437 chr2R 7613608 7613644 I-element 12 5217 8.5 5.5 7.0 1.5 5233 chr2R 7608411 intron CG1358 - chr2R 7611028 intron CG1358 - chr2R 7613644 intron CG1358 - chr2R_12_7610001 chr2R_7610001 RAL-142 590 chr2R 7634347 7634404 chr2R 7634581 7634611 17 227 2.5 6.0 4.2 3.3 264 chr2R 7634347 intron,intron CG43340 +,CR45131 - chr2R 7634479 intron,3` UTR CG43340 +,CR45131 - chr2R 7634611 intron,3` UTR CG43340 +,CR45131 - chr2R_17_7630001 chr2R_7630001 RAL-142 591 chr2R 7688261 7688302 chr2R 7688404 7688431 11 132 7.5 6.0 6.8 1.4 170 chr2R 7688261 exon CG1399 - chr2R 7688346 intron CG1399 - chr2R 7688431 intron CG1399 - chr2R_11_7685001 chr2R_7685001 RAL-142 592 chr2R 7688307 7688322 chr2R 7688401 7688428 6 124 3.5 4.5 4.0 1.2 121 chr2R 7688307 intron CG1399 - chr2R 7688368 intron CG1399 - chr2R 7688428 intron CG1399 - chr2R_6_7685001 chr2R_7685001 RAL-142 593 chr2R 7760271 7760303 chr2R 7760425 7760463 11 152 1.5 3.0 2.2 3.4 192 chr2R 7760271 intron,intron CG30497 -,CG45093 - chr2R 7760367 intron,intron CG30497 -,CG45093 - chr2R 7760463 intron,intron CG30497 -,CG45093 - chr2R_11_7760001 chr2R_7760001 RAL-142 594 chr2R 7787050 7787107 chr2R 7787167 7787193 21 111 9.5 3.5 6.5 2.8 143 chr2R 7787050 intron CanB2 + chr2R 7787122 intron CanB2 + chr2R 7787193 intron CanB2 + chr2R_21_7785001 chr2R_7785001 RAL-142 595 chr2R 7815648 7815692 chr2R 7822152 7822196 Burdock 9 6503 7.0 4.5 5.8 1.3 6548 chr2R 7815648 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822196 3` UTR cathD - chr2R_9_7815001 chr2R_7815001 RAL-142 596 chr2R 7858770 7858804 chr2R 7858900 7858935 12 127 8.5 3.0 5.8 1.8 165 chr2R 7858770 intron Dgk - chr2R 7858852 intron Dgk - chr2R 7858935 intron Dgk - chr2R_12_7855001 chr2R_7855001 RAL-142 597 chr2R 7862219 7862245 chr2R 7867346 7867393 flea 5 5143 4.5 4.0 4.2 1.0 5174 chr2R 7862219 intron Dgk - chr2R 7864806 intron Dgk - chr2R 7867393 intron Dgk - chr2R_5_7860001 chr2R_7860001 RAL-142 598 chr2R 7869173 7869205 chr2R 7873977 7874026 Doc 8 4811 5.5 8.0 6.8 1.0 4853 chr2R 7869173 intron Dgk - chr2R 7871600 intron Dgk - chr2R 7874026 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-142 599 chr2R 7897140 7897152 chr2R 7897212 7897270 4 99 0.0 11.5 5.8 0.6 130 chr2R 7897140 intron CG30377 + chr2R 7897205 intron CG30377 + chr2R 7897270 intron CG30377 + chr2R_4_7895001 chr2R_7895001 RAL-142 600 chr2R 7916391 7916428 chr2R 7916511 7916548 8 111 12.5 4.5 8.5 0.8 157 chr2R 7916391 5` UTR CG12159 - chr2R 7916470 5` UTR CG12159 - chr2R 7916548 intergenic CG12159 -,Cul1 + chr2R_8_7915001 chr2R_7915001 RAL-142 601 chr2R 7916435 7916457 chr2R 7916510 7916560 10 96 7.0 4.5 5.8 1.5 125 chr2R 7916435 5` UTR CG12159 - chr2R 7916498 intergenic CG12159 -,Cul1 + chr2R 7916560 intergenic CG12159 -,Cul1 + chr2R_10_7915001 chr2R_7915001 RAL-142 602 chr2R 7997409 7997455 chr2R 7997548 7997578 25 136 3.0 9.0 6.0 3.6 169 chr2R 7997409 exon Hey - chr2R 7997494 intron Hey - chr2R 7997578 intron Hey - chr2R_25_7995001 chr2R_7995001 RAL-142 603 chr2R 8015638 8015668 chr2R 8017671 8017706 11 2037 5.5 3.0 4.2 2.1 2068 chr2R 8015638 intergenic mir-4981 + chr2R 8016672 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_11_8015001 chr2R_8015001 RAL-142 604 chr2R 8067032 8067095 chr2R 8067149 8067181 19 107 6.5 3.5 5.0 3.2 149 chr2R 8067032 intron CG17977 - chr2R 8067106 intron CG17977 - chr2R 8067181 exon CG17977 - chr2R_19_8065001 chr2R_8065001 RAL-142 605 chr2R 8089258 8089287 chr2R 8089351 8089384 10 111 3.5 6.0 4.8 1.7 126 chr2R 8089258 3` UTR sut2 + chr2R 8089321 intergenic sut2 +,sut3 + chr2R 8089384 intergenic sut2 +,sut3 + chr2R_10_8085001 chr2R_8085001 RAL-142 606 chr2R 8160899 8160949 chr2R 8161024 8161056 1360 25 111 10.0 11.0 10.5 2.2 157 chr2R 8160899 exon CG8708 - chr2R 8160978 intron CG8708 - chr2R 8161056 intron CG8708 - chr2R_25_8160001 chr2R_8160001 RAL-142 607 chr2R 8203734 8203746 chr2R 8203861 8203873 6 126 14.0 10.0 12.0 0.5 139 chr2R 8203734 intron LRP1 + chr2R 8203804 intron LRP1 + chr2R 8203873 intron LRP1 + chr2R_6_8200001 chr2R_8200001 RAL-142 608 chr2R 8203751 8203776 chr2R 8203858 8203894 10 120 7.5 9.5 8.5 1.1 143 chr2R 8203751 intron LRP1 + chr2R 8203822 intron LRP1 + chr2R 8203894 intron LRP1 + chr2R_10_8200001 chr2R_8200001 RAL-142 609 chr2R 8236013 8236029 chr2R 8236122 8236126 5 109 6.0 1.5 3.8 1.0 113 chr2R 8236013 intergenic not near genes chr2R 8236070 intergenic not near genes chr2R 8236126 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-142 610 chr2R 8236030 8236040 chr2R 8236120 8236155 5 110 6.0 1.5 3.8 1.0 125 chr2R 8236030 intergenic not near genes chr2R 8236092 intergenic not near genes chr2R 8236155 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-142 611 chr2R 8249546 8249593 chr2R 8249645 8249710 9 111 3.0 2.0 2.5 2.6 164 chr2R 8249546 5` UTR CG44439 - chr2R 8249628 intergenic CG44439 - chr2R 8249710 intergenic CG44439 - chr2R_9_8245001 chr2R_8245001 RAL-142 612 chr2R 8330841 8330887 chr2R 8331349 8331392 roo 13 513 4.0 4.5 4.2 2.5 551 chr2R 8330841 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331392 intron pdm3 + chr2R_13_8330001 chr2R_8330001 RAL-142 613 chr2R 8398217 8398244 chr2R 8403002 8403015 Doc 4 4788 4.0 5.5 4.8 0.7 4798 chr2R 8398217 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403015 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-142 614 chr2R 8403421 8403426 chr2R 8403539 8403543 4 118 11.5 11.5 11.5 0.3 122 chr2R 8403421 intron CG2121 - chr2R 8403482 intron CG2121 - chr2R 8403543 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-142 615 chr2R 8403428 8403445 chr2R 8403529 8403563 10 112 8.0 8.0 8.0 1.1 135 chr2R 8403428 intron CG2121 - chr2R 8403496 intron CG2121 - chr2R 8403563 intron CG2121 - chr2R_10_8400001 chr2R_8400001 RAL-142 616 chr2R 8403451 8403456 chr2R 8403522 8403574 4 106 4.5 5.5 5.0 0.7 123 chr2R 8403451 intron CG2121 - chr2R 8403512 intron CG2121 - chr2R 8403574 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-142 617 chr2R 8403624 8403671 chr2R 8403836 8403883 12 204 10.5 3.5 7.0 1.5 259 chr2R 8403624 intron CG2121 - chr2R 8403754 intron CG2121 - chr2R 8403883 intron CG2121 - chr2R_12_8400001 chr2R_8400001 RAL-142 618 chr2R 8411082 8411144 chr2R 8412718 8412769 10 1633 3.5 3.5 3.5 2.2 1687 chr2R 8411082 intron CG2121 - chr2R 8411926 intergenic CG2121 - chr2R 8412769 intergenic not near genes chr2R_10_8410001 chr2R_8410001 RAL-142 619 chr2R 8452876 8452931 chr2R 8452990 8453012 23 112 7.0 7.0 7.0 2.9 136 chr2R 8452876 intergenic not near genes chr2R 8452944 intergenic not near genes chr2R 8453012 intergenic not near genes chr2R_23_8450001 chr2R_8450001 RAL-142 620 chr2R 8453062 8453068 chr2R 8453507 8453519 5 448 9.0 9.0 9.0 0.5 457 chr2R 8453062 intergenic not near genes chr2R 8453290 intergenic Mal-A2 + chr2R 8453519 intergenic Mal-A2 + chr2R_5_8450001 chr2R_8450001 RAL-142 621 chr2R 8453069 8453080 chr2R 8453505 8453531 8 442 8.5 8.0 8.2 0.9 462 chr2R 8453069 intergenic not near genes chr2R 8453300 intergenic Mal-A2 + chr2R 8453531 intergenic Mal-A2 + chr2R_8_8450001 chr2R_8450001 RAL-142 622 chr2R 8453082 8453115 chr2R 8453500 8453549 18 434 4.5 7.5 6.0 2.6 467 chr2R 8453082 intergenic not near genes chr2R 8453316 intergenic Mal-A2 + chr2R 8453549 intergenic Mal-A2 + chr2R_18_8450001 chr2R_8450001 RAL-142 623 chr2R 8480909 8480966 chr2R 8481068 8481125 18 156 5.0 6.5 5.8 2.6 216 chr2R 8480909 intron mtt - chr2R 8481017 intron mtt - chr2R 8481125 intron mtt - chr2R_18_8480001 chr2R_8480001 RAL-142 624 chr2R 8483929 8483988 chr2R 8484040 8484099 15 108 3.0 5.5 4.2 2.9 170 chr2R 8483929 intron mtt - chr2R 8484014 intron mtt - chr2R 8484099 intron mtt - chr2R_15_8480001 chr2R_8480001 RAL-142 625 chr2R 8501131 8501136 chr2R 8501258 8501263 4 127 4.5 0.0 2.2 1.2 132 chr2R 8501131 intron mtt - chr2R 8501197 intron mtt - chr2R 8501263 intron mtt - chr2R_4_8500001 chr2R_8500001 RAL-142 626 chr2R 8508776 8508791 chr2R 8508840 8508877 5 86 3.0 5.5 4.2 1.0 101 chr2R 8508776 intron mtt - chr2R 8508826 intron mtt - chr2R 8508877 intron mtt - chr2R_5_8505001 chr2R_8505001 RAL-142 627 chr2R 8524041 8524063 chr2R 8524158 8524165 4 111 8.0 5.5 6.8 0.5 124 chr2R 8524041 intron mtt - chr2R 8524103 intron mtt - chr2R 8524165 intron mtt - chr2R_4_8520001 chr2R_8520001 RAL-142 628 chr2R 8524066 8524092 chr2R 8524150 8524183 9 100 3.5 5.0 4.2 1.7 117 chr2R 8524066 intron mtt - chr2R 8524124 intron mtt - chr2R 8524183 intron mtt - chr2R_9_8520001 chr2R_8520001 RAL-142 629 chr2R 8566040 8566067 chr2R 8567011 8567048 1360 13 972 7.5 14.0 10.8 1.1 1008 chr2R 8566040 5` UTR Cyp6a14 - chr2R 8566544 5` UTR Cyp6a14 - chr2R 8567048 5` UTR Cyp6a14 - chr2R_13_8565001 chr2R_8565001 RAL-142 630 chr2R 8569160 8569176 chr2R 8569508 8569518 6 342 6.5 5.5 6.0 0.9 358 chr2R 8569160 intergenic not near genes chr2R 8569339 intergenic not near genes chr2R 8569518 intergenic not near genes chr2R_6_8565001 chr2R_8565001 RAL-142 631 chr2R 8569180 8569190 chr2R 8569505 8569538 5 338 4.5 5.0 4.8 0.9 358 chr2R 8569180 intergenic not near genes chr2R 8569359 intergenic not near genes chr2R 8569538 intergenic not near genes chr2R_5_8565001 chr2R_8565001 RAL-142 632 chr2R 8722735 8722778 chr2R 8723007 8723036 pogo 8 263 4.5 2.5 3.5 1.8 301 chr2R 8722735 intron CG14767 - chr2R 8722886 intron CG14767 - chr2R 8723036 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-142 633 chr2R 8764088 8764132 chr2R 8764272 8764296 7 173 8.0 6.0 7.0 0.9 208 chr2R 8764088 intergenic not near genes chr2R 8764192 intergenic not near genes chr2R 8764296 intergenic not near genes chr2R_7_8760001 chr2R_8760001 RAL-142 634 chr2R 8777877 8777944 chr2R 8784103 8784141 diver 14 6221 3.5 7.0 5.2 2.3 6264 chr2R 8777877 intergenic not near genes chr2R 8781009 intergenic not near genes chr2R 8784141 intergenic not near genes chr2R_14_8780001 chr2R_8780001 RAL-142 635 chr2R 8808289 8808308 chr2R 8808380 8808415 10 105 3.5 6.0 4.8 1.7 126 chr2R 8808289 intron sns + chr2R 8808352 intron sns + chr2R 8808415 intron sns + chr2R_10_8805001 chr2R_8805001 RAL-142 636 chr2R 8849198 8849252 chr2R 8849311 8849365 16 110 3.5 4.0 3.8 3.3 167 chr2R 8849198 intron sns + chr2R 8849282 intron sns + chr2R 8849365 intron sns + chr2R_16_8845001 chr2R_8845001 RAL-142 637 chr2R 8859855 8859917 chr2R 8861719 8861781 13 1863 11.5 29.5 20.5 0.6 1926 chr2R 8859855 intergenic not near genes chr2R 8860818 intron RyR + chr2R 8861781 intron RyR + chr2R_13_8860001 chr2R_8860001 RAL-142 638 chr2R 8861233 8861269 chr2R 8861391 8861444 16 166 6.5 6.5 6.5 2.1 211 chr2R 8861233 intron RyR + chr2R 8861338 intron RyR + chr2R 8861444 intron RyR + chr2R_16_8860001 chr2R_8860001 RAL-142 639 chr2R 8859888 8859928 chr2R 8861757 8861812 16 1871 11.0 30.5 20.8 0.7 1924 chr2R 8859888 intergenic RyR + chr2R 8860850 intron RyR + chr2R 8861812 intron RyR + chr2R_16_8860001 chr2R_8860001 RAL-142 640 chr2R 9151290 9151332 chr2R 9157784 9157821 Burdock 14 6497 3.5 5.5 4.5 2.5 6531 chr2R 9151290 exon CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157821 intergenic CG8008 - chr2R_14_9150001 chr2R_9150001 RAL-142 641 chr2R 9198551 9198589 chr2R 9198664 9198713 16 116 5.0 0.0 2.5 4.6 162 chr2R 9198551 intron unpg + chr2R 9198632 intron unpg + chr2R 9198713 intron unpg + chr2R_16_9195001 chr2R_9195001 RAL-142 642 chr2R 9212670 9212702 chr2R 9213183 9213206 roo 5 504 6.5 2.0 4.2 1.0 536 chr2R 9212670 intergenic CR45309 + chr2R 9212938 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-142 643 chr2R 9230194 9230201 chr2R 9230309 9230312 5 113 27.0 7.0 17.0 0.3 118 chr2R 9230194 intron hig - chr2R 9230253 intron hig - chr2R 9230312 exon hig - chr2R_5_9230001 chr2R_9230001 RAL-142 644 chr2R 9230206 9230241 chr2R 9230305 9230340 15 95 11.5 6.0 8.8 1.5 134 chr2R 9230206 intron hig - chr2R 9230273 intron hig - chr2R 9230340 exon hig - chr2R_15_9230001 chr2R_9230001 RAL-142 645 chr2R 9236573 9236625 chr2R 9236694 9236746 7 113 1.0 3.0 2.0 2.3 173 chr2R 9236573 intron hig - chr2R 9236660 intron hig - chr2R 9236746 intron hig - chr2R_7_9235001 chr2R_9235001 RAL-142 646 chr2R 9268091 9268123 chr2R 9268188 9268236 8 108 0.5 4.5 2.5 2.3 145 chr2R 9268091 intron Pkn - chr2R 9268164 intron Pkn - chr2R 9268236 intron Pkn - chr2R_8_9265001 chr2R_9265001 RAL-142 647 chr2R 9272787 9272801 chr2R 9273110 9273145 4 335 0.0 0.5 0.2 3.3 358 chr2R 9272787 intron Pkn - chr2R 9272966 intron Pkn - chr2R 9273145 intron Pkn - chr2R_4_9270001 chr2R_9270001 RAL-142 648 chr2R 9368129 9368154 chr2R 9368202 9368224 8 82 4.5 0.0 2.2 2.5 95 chr2R 9368129 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368224 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-142 649 chr2R 9510640 9510694 chr2R 9510780 9510825 14 138 5.0 4.0 4.5 2.5 185 chr2R 9510640 exon brp + chr2R 9510732 intron brp + chr2R 9510825 intron brp + chr2R_14_9510001 chr2R_9510001 RAL-142 650 chr2R 9548547 9548600 chr2R 9548798 9548857 7 250 5.0 3.5 4.2 1.3 310 chr2R 9548547 intergenic not near genes chr2R 9548702 intergenic not near genes chr2R 9548857 intergenic not near genes chr2R_7_9545001 chr2R_9545001 RAL-142 651 chr2R 9561806 9561847 chr2R 9561915 9561970 14 121 1.0 2.5 1.8 5.0 164 chr2R 9561806 3` UTR,intron CR45281 -,CG1809 + chr2R 9561888 3` UTR,intron CR45281 -,CG1809 + chr2R 9561970 3` UTR,intron CR45281 -,CG1809 + chr2R_14_9560001 chr2R_9560001 RAL-142 652 chr2R 9649163 9649213 chr2R 9649258 9649279 17 91 4.0 3.5 3.8 3.5 116 chr2R 9649163 intron Mmp2 - chr2R 9649221 intron Mmp2 - chr2R 9649279 intron Mmp2 - chr2R_17_9645001 chr2R_9645001 RAL-142 653 chr2R 9651025 9651068 chr2R 9651118 9651133 12 99 5.0 3.0 4.0 2.4 108 chr2R 9651025 intron Mmp2 - chr2R 9651079 intron Mmp2 - chr2R 9651133 intron Mmp2 - chr2R_12_9650001 chr2R_9650001 RAL-142 654 chr2R 9672020 9672085 chr2R 9672159 9672209 19 138 2.0 2.5 2.2 5.9 189 chr2R 9672020 intron Mmp2 - chr2R 9672114 intron Mmp2 - chr2R 9672209 intron Mmp2 - chr2R_19_9670001 chr2R_9670001 RAL-142 655 chr2R 9677511 9677561 chr2R 9677624 9677675 9 110 5.5 6.0 5.8 1.3 164 chr2R 9677511 intron Mmp2 - chr2R 9677593 intron Mmp2 - chr2R 9677675 intron Mmp2 - chr2R_9_9675001 chr2R_9675001 RAL-142 656 chr2R 9699420 9699442 chr2R 9699493 9699536 4 90 7.5 2.0 4.8 0.7 116 chr2R 9699420 intergenic not near genes chr2R 9699478 intergenic not near genes chr2R 9699536 intergenic not near genes chr2R_4_9695001 chr2R_9695001 RAL-142 657 chr2R 9726584 9726624 chr2R 9734170 9734210 17.6 5 7582 5.0 4.0 4.5 0.9 7626 chr2R 9726584 intron sqa - chr2R 9730397 intron sqa - chr2R 9734210 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-142 658 chr2R 9786080 9786128 chr2R 9786533 9786549 15 435 3.5 2.5 3.0 3.8 469 chr2R 9786080 intron CG1688 - chr2R 9786314 intron CG1688 - chr2R 9786549 intron CG1688 - chr2R_15_9785001 chr2R_9785001 RAL-142 659 chr2R 9904309 9904330 chr2R 9904411 9904444 7 107 4.0 8.0 6.0 1.0 135 chr2R 9904309 intergenic not near genes chr2R 9904376 intergenic not near genes chr2R 9904444 intergenic not near genes chr2R_7_9900001 chr2R_9900001 RAL-142 660 chr2R 9954901 9954961 chr2R 9955013 9955056 11 100 5.0 2.0 3.5 2.4 155 chr2R 9954901 intron Mef2 - chr2R 9954978 intron Mef2 - chr2R 9955056 intron Mef2 - chr2R_11_9950001 chr2R_9950001 RAL-142 661 chr2R 9998043 9998092 chr2R 9998172 9998221 10 126 3.5 2.5 3.0 2.5 178 chr2R 9998043 intron Pka-R2 - chr2R 9998132 intron Pka-R2 - chr2R 9998221 intron Pka-R2 - chr2R_10_9995001 chr2R_9995001 RAL-142 662 chr2R 10005524 10005581 chr2R 10005656 10005713 16 126 6.0 3.5 4.8 2.8 189 chr2R 10005524 intron Pka-R2 - chr2R 10005618 intron Pka-R2 - chr2R 10005713 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-142 663 chr2R 10005831 10005875 chr2R 10007014 10007055 1360 17 1181 8.0 2.0 5.0 2.8 1224 chr2R 10005831 intron Pka-R2 - chr2R 10006443 intron Pka-R2 - chr2R 10007055 intron Pka-R2 - chr2R_17_10005001 chr2R_10005001 RAL-142 664 chr2R 10059231 10059295 chr2R 10059655 10059693 15 408 6.5 2.5 4.5 2.7 462 chr2R 10059231 intron magu + chr2R 10059462 intron magu + chr2R 10059693 intron magu + chr2R_15_10055001 chr2R_10055001 RAL-142 665 chr2R 10086903 10086934 chr2R 10087017 10087061 13 126 8.5 10.0 9.2 1.3 158 chr2R 10086903 intron,exon CG2269 +,sut4 - chr2R 10086982 intron,5` UTR CG2269 +,sut4 - chr2R 10087061 intron,5` UTR CG2269 +,sut4 - chr2R_13_10085001 chr2R_10085001 RAL-142 666 chr2R 10122706 10122748 chr2R 10122951 10122993 8 240 6.5 5.0 5.8 1.2 287 chr2R 10122706 intergenic Ccs - chr2R 10122850 intergenic Ccs - chr2R 10122993 intergenic Ccs - chr2R_8_10120001 chr2R_10120001 RAL-142 667 chr2R 10155822 10155885 chr2R 10155951 10156014 17 128 4.5 2.5 3.5 3.8 192 chr2R 10155822 intron KCNQ - chr2R 10155918 intron,3` UTR KCNQ -,mlt - chr2R 10156014 intron,3` UTR KCNQ -,mlt - chr2R_17_10155001 chr2R_10155001 RAL-142 668 chr2R 10176220 10176261 chr2R 10176638 10176689 4 422 0.5 3.0 1.8 1.4 469 chr2R 10176220 intron KCNQ - chr2R 10176454 intron KCNQ - chr2R 10176689 intron KCNQ - chr2R_4_10175001 chr2R_10175001 RAL-142 669 chr2R 10216199 10216223 chr2R 10216272 10216320 7 99 1.0 1.5 1.2 3.2 121 chr2R 10216199 intron,intron CG12912 -,Hr46 - chr2R 10216260 intron,intron CG12912 -,Hr46 - chr2R 10216320 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-142 670 chr2R 10225705 10225752 chr2R 10225820 10225869 19 111 4.5 5.5 5.0 3.2 164 chr2R 10225705 intron,intron CG12912 -,Hr46 - chr2R 10225787 intron,intron CG12912 -,Hr46 - chr2R 10225869 intron,intron CG12912 -,Hr46 - chr2R_19_10225001 chr2R_10225001 RAL-142 671 chr2R 10257160 10257188 chr2R 10257260 10257302 16 122 4.0 0.5 2.2 5.0 142 chr2R 10257160 intron CG12911 + chr2R 10257231 intron CG12911 + chr2R 10257302 intron CG12911 + chr2R_16_10255001 chr2R_10255001 RAL-142 672 chr2R 10307044 10307094 chr2R 10307200 10307249 20 154 6.5 8.5 7.5 2.4 205 chr2R 10307044 3` UTR JhI-1 - chr2R 10307146 3` UTR JhI-1 - chr2R 10307249 3` UTR JhI-1 - chr2R_20_10305001 chr2R_10305001 RAL-142 673 chr2R 10313289 10313338 chr2R 10313405 10313467 16 122 2.5 3.0 2.8 4.2 178 chr2R 10313289 intergenic not near genes chr2R 10313378 intergenic not near genes chr2R 10313467 intergenic Ndg + chr2R_16_10310001 chr2R_10310001 RAL-142 674 chr2R 10318483 10318545 chr2R 10318604 10318666 21 116 6.5 9.5 8.0 2.3 183 chr2R 10318483 intron Ndg + chr2R 10318574 intron Ndg + chr2R 10318666 intron Ndg + chr2R_21_10315001 chr2R_10315001 RAL-142 675 chr2R 10322052 10322080 chr2R 10322164 10322191 9 115 9.5 9.0 9.2 0.9 139 chr2R 10322052 3` UTR Ndg + chr2R 10322122 intergenic Ndg + chr2R 10322191 intergenic Ndg + chr2R_9_10320001 chr2R_10320001 RAL-142 676 chr2R 10352649 10352660 chr2R 10352753 10352772 6 107 17.5 8.0 12.8 0.4 123 chr2R 10352649 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352710 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352772 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_6_10350001 chr2R_10350001 RAL-142 677 chr2R 10352663 10352703 chr2R 10352749 10352794 12 98 6.5 7.0 6.8 1.5 131 chr2R 10352663 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352794 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_12_10350001 chr2R_10350001 RAL-142 678 chr2R 10409025 10409086 chr2R 10409137 10409167 11 108 0.0 4.0 2.0 3.7 142 chr2R 10409025 intron CG42732 - chr2R 10409096 intron CG42732 - chr2R 10409167 intron,exon CG42732 -,CG33477 - chr2R_11_10405001 chr2R_10405001 RAL-142 679 chr2R 10428985 10429052 chr2R 10429097 10429128 16 105 3.0 3.0 3.0 4.0 143 chr2R 10428985 intergenic not near genes chr2R 10429056 intergenic not near genes chr2R 10429128 intergenic not near genes chr2R_16_10425001 chr2R_10425001 RAL-142 680 chr2R 10454070 10454105 chr2R 10454181 10454182 10 98 10.0 6.0 8.0 1.1 112 chr2R 10454070 intron,intron Galphao +,Cyp49a1 - chr2R 10454126 intron,intron Galphao +,Cyp49a1 - chr2R 10454182 intron,intron Galphao +,Cyp49a1 - chr2R_10_10450001 chr2R_10450001 RAL-142 681 chr2R 10454107 10454130 chr2R 10454175 10454184 12 90 8.5 5.5 7.0 1.5 77 chr2R 10454107 intron,intron Galphao +,Cyp49a1 - chr2R 10454146 intron,intron Galphao +,Cyp49a1 - chr2R 10454184 intron,intron Galphao +,Cyp49a1 - chr2R_12_10450001 chr2R_10450001 RAL-142 682 chr2R 10509560 10509568 chr2R 10509681 10509690 6 121 10.0 0.0 5.0 1.0 130 chr2R 10509560 intron lola - chr2R 10509625 intron lola - chr2R 10509690 intron lola - chr2R_6_10505001 chr2R_10505001 RAL-142 683 chr2R 10574602 10574633 chr2R 10574719 10574750 4 112 4.5 5.0 4.8 0.7 148 chr2R 10574602 intron psq + chr2R 10574676 intron psq + chr2R 10574750 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-142 684 chr2R 10644024 10644044 chr2R 10644137 10644152 8 112 8.0 0.5 4.2 1.5 128 chr2R 10644024 intron Git - chr2R 10644088 intron Git - chr2R 10644152 intron Git - chr2R_8_10640001 chr2R_10640001 RAL-142 685 chr2R 10644045 10644077 chr2R 10644136 10644154 16 107 8.0 0.5 4.2 3.1 109 chr2R 10644045 intron Git - chr2R 10644100 intron Git - chr2R 10644154 intron Git - chr2R_16_10640001 chr2R_10640001 RAL-142 686 chr2R 10727482 10727510 chr2R 10727596 10727643 4 118 4.5 2.5 3.5 0.9 161 chr2R 10727482 intron Rab3 - chr2R 10727562 intron Rab3 - chr2R 10727643 intron Rab3 - chr2R_4_10725001 chr2R_10725001 RAL-142 687 chr2R 10914077 10914089 chr2R 10914169 10914170 5 90 2.0 0.0 1.0 2.5 93 chr2R 10914077 intergenic not near genes chr2R 10914124 intergenic not near genes chr2R 10914170 intergenic not near genes chr2R_5_10910001 chr2R_10910001 RAL-142 688 chr2R 10948017 10948049 chr2R 10955575 10955630 17.6 9 7571 1.5 3.0 2.2 2.8 7613 chr2R 10948017 intergenic not near genes chr2R 10951824 intergenic not near genes chr2R 10955630 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-142 689 chr2R 10959055 10959102 chr2R 10959169 10959194 8 104 0.0 1.0 0.5 5.3 139 chr2R 10959055 intergenic not near genes chr2R 10959124 intergenic not near genes chr2R 10959194 intergenic not near genes chr2R_8_10955001 chr2R_10955001 RAL-142 690 chr2R 11009780 11009847 chr2R 11018987 11019009 roo 6 9192 1.5 2.0 1.8 2.1 9229 chr2R 11009780 intron luna - chr2R 11014394 intron luna - chr2R 11019009 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-142 691 chr2R 11102849 11102898 chr2R 11102948 11103015 5 94 1.0 0.0 0.5 3.3 166 chr2R 11102849 intron luna - chr2R 11102932 intron luna - chr2R 11103015 intron luna - chr2R_5_11100001 chr2R_11100001 RAL-142 692 chr2R 11158853 11158893 chr2R 11159057 11159097 5 202 1.0 4.0 2.5 1.4 244 chr2R 11158853 intron CG13229 - chr2R 11158975 intron CG13229 - chr2R 11159097 intron,5` UTR CG13229 -,shn + chr2R_5_11155001 chr2R_11155001 RAL-142 693 chr2R 11161094 11161120 chr2R 11161385 11161410 4 282 2.0 3.0 2.5 1.1 316 chr2R 11161094 intron,intron CG13229 -,shn + chr2R 11161252 intron,intron CG13229 -,shn + chr2R 11161410 intron,intron CG13229 -,shn + chr2R_4_11160001 chr2R_11160001 RAL-142 694 chr2R 11171523 11171555 chr2R 11171697 11171734 9 182 1.5 3.0 2.2 2.8 211 chr2R 11171523 intron,intron CG13229 -,shn + chr2R 11171628 intron,intron CG13229 -,shn + chr2R 11171734 intron,intron CG13229 -,shn + chr2R_9_11170001 chr2R_11170001 RAL-142 695 chr2R 11179237 11179286 chr2R 11179358 11179387 11 115 8.0 7.5 7.8 1.2 150 chr2R 11179237 intron shn + chr2R 11179312 intron shn + chr2R 11179387 intron shn + chr2R_11_11175001 chr2R_11175001 RAL-142 696 chr2R 11202118 11202148 chr2R 11202220 11202271 7 122 7.0 3.5 5.2 1.1 153 chr2R 11202118 intron shn + chr2R 11202194 intron shn + chr2R 11202271 intron shn + chr2R_7_11200001 chr2R_11200001 RAL-142 697 chr2R 11207809 11207839 chr2R 11208020 11208044 BS 12 213 8.5 5.5 7.0 1.5 235 chr2R 11207809 intron shn + chr2R 11207926 intron shn + chr2R 11208044 intron shn + chr2R_12_11205001 chr2R_11205001 RAL-142 698 chr2R 11232776 11232838 chr2R 11232897 11232963 16 119 0.0 8.0 4.0 3.2 187 chr2R 11232776 intergenic metro -,CG13218 - chr2R 11232870 intergenic CG13218 -,metro - chr2R 11232963 intergenic CG13218 -,metro - chr2R_16_11230001 chr2R_11230001 RAL-142 699 chr2R 11249147 11249198 chr2R 11249296 11249354 8 155 3.0 0.5 1.8 2.9 207 chr2R 11249147 intergenic CG43112 + chr2R 11249250 intergenic CG43112 + chr2R 11249354 intergenic CG43112 + chr2R_8_11245001 chr2R_11245001 RAL-142 700 chr2R 11265704 11265746 chr2R 11265807 11265821 6 96 8.0 0.0 4.0 1.2 117 chr2R 11265704 exon Cpr47Ee + chr2R 11265762 exon Cpr47Ee + chr2R 11265821 intron Cpr47Ee + chr2R_6_11265001 chr2R_11265001 RAL-142 701 chr2R 11292963 11292996 chr2R 11293052 11293128 12 110 5.5 0.5 3.0 3.0 165 chr2R 11292963 exon,3` UTR dare -,CG30033 + chr2R 11293046 5` UTR,3` UTR dare -,CG30033 + chr2R 11293128 5` UTR,3` UTR dare -,CG30033 + chr2R_12_11290001 chr2R_11290001 RAL-142 702 chr2R 11297599 11297616 chr2R 11301947 11301972 flea 7 4346 8.0 5.5 6.8 0.9 4373 chr2R 11297599 intergenic CG42336 - chr2R 11299786 intergenic not near genes chr2R 11301972 5` UTR CG7741 + chr2R_7_11295001 chr2R_11295001 RAL-142 703 chr2R 11297619 11297644 chr2R 11301945 11302000 flea 10 4347 4.5 5.5 5.0 1.7 4381 chr2R 11297619 intergenic CG42336 - chr2R 11299810 intergenic not near genes chr2R 11302000 5` UTR CG7741 + chr2R_10_11295001 chr2R_11295001 RAL-142 704 chr2R 11344111 11344181 chr2R 11344242 11344308 12 122 0.0 3.5 1.8 4.3 197 chr2R 11344111 intergenic alphaTry - chr2R 11344210 intergenic alphaTry - chr2R 11344308 3` UTR alphaTry - chr2R_12_11340001 chr2R_11340001 RAL-142 705 chr2R 11367995 11368055 chr2R 11368105 11368166 13 110 1.0 3.5 2.2 4.1 171 chr2R 11367995 intron CG13204 + chr2R 11368080 intron CG13204 + chr2R 11368166 intron CG13204 + chr2R_13_11365001 chr2R_11365001 RAL-142 706 chr2R 11415516 11415551 chr2R 11418665 11418705 opus 9 3155 0.5 3.0 1.8 3.2 3189 chr2R 11415516 intron Drip - chr2R 11417110 intron Drip - chr2R 11418705 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-142 707 chr2R 11419837 11419889 chr2R 11420002 11420034 11 160 4.5 4.0 4.2 2.1 197 chr2R 11419837 intron Drip - chr2R 11419936 intron Drip - chr2R 11420034 intron Drip - chr2R_11_11415001 chr2R_11415001 RAL-142 708 chr2R 11445180 11445198 chr2R 11445299 11445317 5 116 2.5 0.0 1.2 2.3 137 chr2R 11445180 intron qvr + chr2R 11445248 intron qvr + chr2R 11445317 intron qvr + chr2R_5_11445001 chr2R_11445001 RAL-142 709 chr2R 11472629 11472679 chr2R 11473846 11473911 pogo 16 1224 4.5 5.5 5.0 2.7 1282 chr2R 11472629 intergenic not near genes chr2R 11473270 intergenic not near genes chr2R 11473911 intergenic not near genes chr2R_16_11470001 chr2R_11470001 RAL-142 710 chr2R 11493250 11493296 chr2R 11493368 11493389 18 103 2.5 6.0 4.2 3.5 139 chr2R 11493250 intron inv + chr2R 11493320 intron inv + chr2R 11493389 intron inv + chr2R_18_11490001 chr2R_11490001 RAL-142 711 chr2R 11493836 11493878 chr2R 11494233 11494266 16 394 3.5 8.0 5.8 2.4 430 chr2R 11493836 intron inv + chr2R 11494051 intron inv + chr2R 11494266 intron inv + chr2R_16_11490001 chr2R_11490001 RAL-142 712 chr2R 11555364 11555419 chr2R 11555734 11555768 4 365 0.5 3.0 1.8 1.4 404 chr2R 11555364 intergenic not near genes chr2R 11555566 intergenic not near genes chr2R 11555768 intergenic not near genes chr2R_4_11555001 chr2R_11555001 RAL-142 713 chr2R 11614616 11614798 chr2R 11614723 11614921 16 119 3.5 4.5 4.0 3.2 305 chr2R 11614616 intron tou - chr2R 11614768 intron tou - chr2R 11614921 intron tou - chr2R_16_11610001 chr2R_11610001 RAL-142 714 chr2R 11672818 11672846 chr2R 11672939 11672968 11 119 3.5 7.5 5.5 1.7 150 chr2R 11672818 intron,exon Roc2 -,Tret1-1 + chr2R 11672893 intron,intron Roc2 -,Tret1-1 + chr2R 11672968 intron,intron Roc2 -,Tret1-1 + chr2R_11_11670001 chr2R_11670001 RAL-142 715 chr2R 11801361 11801383 chr2R 11801530 11801552 5 169 3.5 3.0 3.2 1.2 191 chr2R 11801361 intron ths + chr2R 11801456 intron ths + chr2R 11801552 intron ths + chr2R_5_11800001 chr2R_11800001 RAL-142 716 chr2R 11822976 11823006 chr2R 11823059 11823095 7 100 1.5 1.5 1.5 2.8 119 chr2R 11822976 intergenic not near genes chr2R 11823036 intergenic not near genes chr2R 11823095 intergenic not near genes chr2R_7_11820001 chr2R_11820001 RAL-142 717 chr2R 11863842 11863885 chr2R 11863944 11864007 11 119 5.5 4.0 4.8 1.9 165 chr2R 11863842 intergenic CG42531 + chr2R 11863924 intergenic CG42531 + chr2R 11864007 intergenic CG42531 + chr2R_11_11860001 chr2R_11860001 RAL-142 718 chr2R 11922705 11922736 chr2R 11922819 11922850 4 114 8.5 2.0 5.2 0.6 145 chr2R 11922705 intergenic not near genes chr2R 11922778 intergenic not near genes chr2R 11922850 intergenic not near genes chr2R_4_11920001 chr2R_11920001 RAL-142 719 chr2R 11922739 11922767 chr2R 11922817 11922865 7 103 3.5 2.5 3.0 1.8 126 chr2R 11922739 intergenic not near genes chr2R 11922802 intergenic not near genes chr2R 11922865 intergenic not near genes chr2R_7_11920001 chr2R_11920001 RAL-142 720 chr2R 12061025 12061074 chr2R 12061140 12061189 6 114 8.5 0.0 4.2 1.2 164 chr2R 12061025 intron Drep-3 + chr2R 12061107 intron Drep-3 + chr2R 12061189 intron Drep-3 + chr2R_6_12060001 chr2R_12060001 RAL-142 721 chr2R 12073366 12073430 chr2R 12073485 12073535 14 117 1.5 2.0 1.8 5.0 169 chr2R 12073366 intron CG8888 - chr2R 12073450 intron CG8888 - chr2R 12073535 intron CG8888 - chr2R_14_12070001 chr2R_12070001 RAL-142 722 chr2R 12093936 12093974 chr2R 12094066 12094122 9 137 2.5 3.5 3.0 2.2 186 chr2R 12093936 intron jeb - chr2R 12094029 intron jeb - chr2R 12094122 intron jeb - chr2R_9_12090001 chr2R_12090001 RAL-142 723 chr2R 12108068 12108079 chr2R 12108208 12108219 4 138 3.0 0.0 1.5 1.6 151 chr2R 12108068 intron jeb - chr2R 12108144 intron jeb - chr2R 12108219 intron jeb - chr2R_4_12105001 chr2R_12105001 RAL-142 724 chr2R 12126854 12126894 chr2R 12126957 12126988 6 108 2.5 1.5 2.0 2.0 134 chr2R 12126854 intergenic not near genes chr2R 12126921 intergenic not near genes chr2R 12126988 intergenic not near genes chr2R_6_12125001 chr2R_12125001 RAL-142 725 chr2R 12146449 12146474 chr2R 12147592 12147616 5 1138 55.0 33.0 44.0 0.1 1167 chr2R 12146449 intron,3` UTR Hen1 +,CG8878 - chr2R 12147032 intron,exon Hen1 +,CG8878 - chr2R 12147616 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-142 726 chr2R 12146475 12146503 chr2R 12147591 12147630 11 1126 54.0 33.0 43.5 0.2 1155 chr2R 12146475 intron,3` UTR Hen1 +,CG8878 - chr2R 12147052 intron,exon Hen1 +,CG8878 - chr2R 12147630 intron,exon Hen1 +,CG8878 - chr2R_11_12145001 chr2R_12145001 RAL-142 727 chr2R 12145912 12145948 chr2R 12148598 12148608 7 2672 46.5 54.0 50.2 0.1 2696 chr2R 12145912 exon Hen1 + chr2R 12147260 intron,intron Hen1 +,CG8878 - chr2R 12148608 intron,exon Hen1 +,CG8878 - chr2R_7_12145001 chr2R_12145001 RAL-142 728 chr2R 12145910 12145963 chr2R 12148610 12148637 13 2676 46.5 49.0 47.8 0.3 2727 chr2R 12145910 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148637 intron,exon Hen1 +,CG8878 - chr2R_13_12145001 chr2R_12145001 RAL-142 729 chr2R 12185969 12186033 chr2R 12186099 12186131 33 125 7.5 7.0 7.2 4.0 162 chr2R 12185969 intron Cyp6g1 + chr2R 12186050 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_33_12185001 chr2R_12185001 RAL-142 730 chr2R 12185226 12185243 chr2R 12188124 12188135 4 2892 31.5 211.5 121.5 0.0 2909 chr2R 12185226 3` UTR,exon CG13175 +,CG33964 + chr2R 12186680 exon Cyp6g1 + chr2R 12188135 exon Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-142 731 chr2R 12187480 12187484 chr2R 12190061 12190065 4 2581 112.0 151.5 131.8 0.0 2585 chr2R 12187480 exon Cyp6g1 + chr2R 12188772 exon Cyp6g2 - chr2R 12190065 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-142 732 chr2R 12187473 12187523 chr2R 12190069 12190124 41 2602 153.0 150.0 151.5 0.3 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_41_12185001 chr2R_12185001 RAL-142 733 chr2R 12217543 12217601 chr2R 12217658 12217694 13 102 3.0 7.5 5.2 2.1 151 chr2R 12217543 intergenic not near genes chr2R 12217618 intergenic not near genes chr2R 12217694 intergenic not near genes chr2R_13_12215001 chr2R_12215001 RAL-142 734 chr2R 12334856 12334884 chr2R 12334969 12334982 10 110 14.0 5.0 9.5 1.0 126 chr2R 12334856 intergenic CG8490 + chr2R 12334919 intergenic CG8490 + chr2R 12334982 intergenic CG8490 + chr2R_10_12330001 chr2R_12330001 RAL-142 735 chr2R 12481142 12481168 chr2R 12482939 12482953 roo 10 1808 4.5 11.0 7.8 1.1 1811 chr2R 12481142 exon Dh44-R2 + chr2R 12482048 intron Dh44-R2 + chr2R 12482953 intron Dh44-R2 + chr2R_10_12480001 chr2R_12480001 RAL-142 736 chr2R 12501678 12501719 chr2R 12503857 12503900 Rt1c 10 2182 4.0 8.5 6.2 1.4 2222 chr2R 12501678 intron fdl - chr2R 12502789 intron fdl - chr2R 12503900 intron fdl - chr2R_10_12500001 chr2R_12500001 RAL-142 737 chr2R 12540453 12540497 chr2R 12540564 12540581 4 94 4.0 2.5 3.2 1.0 128 chr2R 12540453 intron fra + chr2R 12540517 intron fra + chr2R 12540581 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-142 738 chr2R 12548485 12548496 chr2R 12548597 12548608 5 112 5.5 9.0 7.2 0.6 123 chr2R 12548485 intron fra + chr2R 12548546 intron fra + chr2R 12548608 intron fra + chr2R_5_12545001 chr2R_12545001 RAL-142 739 chr2R 12548497 12548547 chr2R 12548594 12548620 6 100 0.0 7.5 3.8 1.2 123 chr2R 12548497 intron fra + chr2R 12548558 intron fra + chr2R 12548620 intron fra + chr2R_6_12545001 chr2R_12545001 RAL-142 740 chr2R 12565019 12565037 chr2R 12565243 12565265 7 229 7.0 1.5 4.2 1.3 246 chr2R 12565019 intergenic CG33775 - chr2R 12565142 intergenic CG33775 - chr2R 12565265 intergenic CG33775 - chr2R_7_12565001 chr2R_12565001 RAL-142 741 chr2R 12565530 12565589 chr2R 12565935 12565994 20 404 5.5 6.0 5.8 2.9 464 chr2R 12565530 intergenic not near genes chr2R 12565762 intergenic Cyp301a1 + chr2R 12565994 intergenic Cyp301a1 + chr2R_20_12565001 chr2R_12565001 RAL-142 742 chr2R 12643778 12643798 chr2R 12643867 12643892 5 93 5.5 3.0 4.2 1.0 114 chr2R 12643778 intron CG8785 - chr2R 12643835 intron CG8785 - chr2R 12643892 exon CG8785 - chr2R_5_12640001 chr2R_12640001 RAL-142 743 chr2R 12700805 12700825 chr2R 12700907 12700925 8 98 10.0 3.0 6.5 1.1 120 chr2R 12700805 3` UTR wuc + chr2R 12700865 intergenic wuc + chr2R 12700925 intergenic wuc + chr2R_8_12700001 chr2R_12700001 RAL-142 744 chr2R 12700830 12700848 chr2R 12700906 12700928 12 93 6.0 3.0 4.5 2.2 98 chr2R 12700830 3` UTR wuc + chr2R 12700879 intergenic wuc + chr2R 12700928 intergenic wuc + chr2R_12_12700001 chr2R_12700001 RAL-142 745 chr2R 12707488 12707540 chr2R 12715884 12715941 roo 7 8399 2.0 0.5 1.2 3.2 8453 chr2R 12707488 intron CG42663 + chr2R 12711714 intron CG42663 + chr2R 12715941 intron CG42663 + chr2R_7_12710001 chr2R_12710001 RAL-142 746 chr2R 12777766 12777777 chr2R 12777906 12777917 4 140 5.5 3.0 4.2 0.8 151 chr2R 12777766 5` UTR CR45266 + chr2R 12777842 5` UTR CR45266 + chr2R 12777917 5` UTR CR45266 + chr2R_4_12775001 chr2R_12775001 RAL-142 747 chr2R 12789291 12789328 chr2R 12797656 12797690 roo 4 8367 2.5 1.5 2.0 1.3 8399 chr2R 12789291 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-142 748 chr2R 12879199 12879262 chr2R 12879313 12879361 12 105 7.5 7.0 7.2 1.5 162 chr2R 12879199 intron,exon Aats-asp +,Nmda1 - chr2R 12879280 intron,intron Aats-asp +,Nmda1 - chr2R 12879361 intron,intron Aats-asp +,Nmda1 - chr2R_12_12875001 chr2R_12875001 RAL-142 749 chr2R 12897425 12897463 chr2R 12897551 12897578 4 122 8.0 4.0 6.0 0.6 153 chr2R 12897425 intron vg + chr2R 12897502 intron vg + chr2R 12897578 intron vg + chr2R_4_12895001 chr2R_12895001 RAL-142 750 chr2R 12951639 12951686 chr2R 12951755 12951774 4 106 17.5 18.5 18.0 0.2 135 chr2R 12951639 intron,intron CG44251 -,CG44250 - chr2R 12951706 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_4_12950001 chr2R_12950001 RAL-142 751 chr2R 13043038 13043064 chr2R 13043136 13043178 4 110 0.0 4.5 2.2 1.2 140 chr2R 13043038 intergenic not near genes chr2R 13043108 intergenic not near genes chr2R 13043178 intergenic not near genes chr2R_4_13040001 chr2R_13040001 RAL-142 752 chr2R 13089744 13089768 chr2R 13089868 13089884 6 129 4.0 4.5 4.2 1.2 140 chr2R 13089744 intergenic not near genes chr2R 13089814 intergenic not near genes chr2R 13089884 intergenic not near genes chr2R_6_13085001 chr2R_13085001 RAL-142 753 chr2R 13129162 13129215 chr2R 13129275 13129328 18 108 6.0 2.5 4.2 3.5 166 chr2R 13129162 intergenic CG3955 -,CG13326 - chr2R 13129245 intergenic CG3955 -,CG13326 - chr2R 13129328 intergenic CG13326 -,CG3955 - chr2R_18_13125001 chr2R_13125001 RAL-142 754 chr2R 13136809 13136862 chr2R 13141639 13141695 Doc 33 4826 7.5 3.0 5.2 5.3 4886 chr2R 13136809 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141695 intron Cap-G + chr2R_33_13135001 chr2R_13135001 RAL-142 755 chr2R 13167403 13167410 chr2R 13167531 13167538 6 128 14.0 0.0 7.0 0.8 135 chr2R 13167403 intron GLaz - chr2R 13167470 intron GLaz - chr2R 13167538 intron GLaz - chr2R_6_13165001 chr2R_13165001 RAL-142 756 chr2R 13167411 13167461 chr2R 13167526 13167596 10 128 5.5 0.0 2.8 2.6 185 chr2R 13167411 intron GLaz - chr2R 13167504 intron GLaz - chr2R 13167596 intron GLaz - chr2R_10_13165001 chr2R_13165001 RAL-142 757 chr2R 13403899 13403939 chr2R 13404008 13404044 10 113 4.0 1.5 2.8 2.6 145 chr2R 13403899 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404044 intergenic not near genes chr2R_10_13400001 chr2R_13400001 RAL-142 758 chr2R 13404315 13404347 chr2R 13404411 13404443 11 96 0.0 5.0 2.5 3.1 128 chr2R 13404315 intergenic not near genes chr2R 13404379 intergenic not near genes chr2R 13404443 intergenic not near genes chr2R_11_13400001 chr2R_13400001 RAL-142 759 chr2R 13439081 13439140 chr2R 13439225 13439289 11 146 2.5 2.5 2.5 3.1 208 chr2R 13439081 intergenic CG42321 -,cnn - chr2R 13439185 intergenic cnn -,CG42321 - chr2R 13439289 intergenic cnn -,CG42321 - chr2R_11_13435001 chr2R_13435001 RAL-142 760 chr2R 13446654 13446677 chr2R 13446770 13446788 6 115 14.0 0.0 7.0 0.8 134 chr2R 13446654 intron cnn - chr2R 13446721 intron cnn - chr2R 13446788 intron cnn - chr2R_6_13445001 chr2R_13445001 RAL-142 761 chr2R 13448629 13448656 chr2R 13448762 13448780 8 136 9.0 5.5 7.2 1.0 151 chr2R 13448629 intron cnn - chr2R 13448704 intron cnn - chr2R 13448780 intron cnn - chr2R_8_13445001 chr2R_13445001 RAL-142 762 chr2R 13523451 13523466 chr2R 13523581 13523596 10 130 0.5 0.5 0.5 6.7 145 chr2R 13523451 intron Vmat - chr2R 13523524 intron Vmat - chr2R 13523596 intron Vmat - chr2R_10_13520001 chr2R_13520001 RAL-142 763 chr2R 13532485 13532529 chr2R 13532635 13532680 19 149 6.5 4.0 5.2 3.1 195 chr2R 13532485 intron Vmat - chr2R 13532582 intron Vmat - chr2R 13532680 intron Vmat - chr2R_19_13530001 chr2R_13530001 RAL-142 764 chr2R 13540178 13540195 chr2R 13540290 13540309 7 113 5.0 0.0 2.5 2.0 131 chr2R 13540178 intron CG6145 - chr2R 13540244 intron CG6145 - chr2R 13540309 intron CG6145 - chr2R_7_13540001 chr2R_13540001 RAL-142 765 chr2R 13554755 13554771 chr2R 13554867 13554891 4 114 0.0 16.0 8.0 0.4 136 chr2R 13554755 intron Roe1 + chr2R 13554823 intron Roe1 + chr2R 13554891 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-142 766 chr2R 13580498 13580504 chr2R 13580846 13580884 jockey 6 363 9.5 3.5 6.5 0.8 386 chr2R 13580498 3` UTR CG6191 - chr2R 13580691 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580884 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-142 767 chr2R 13580505 13580531 chr2R 13580845 13580871 jockey 13 369 4.5 3.5 4.0 2.6 366 chr2R 13580505 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580871 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_13_13580001 chr2R_13580001 RAL-142 768 chr2R 13645835 13645888 chr2R 13646205 13646257 6 363 7.5 11.0 9.2 0.6 422 chr2R 13645835 intron fas + chr2R 13646046 intron fas + chr2R 13646257 intron fas + chr2R_6_13645001 chr2R_13645001 RAL-142 769 chr2R 13648705 13648751 chr2R 13649151 13649215 9 445 1.0 1.5 1.2 4.1 510 chr2R 13648705 intron fas + chr2R 13648960 intron fas + chr2R 13649215 intron fas + chr2R_9_13645001 chr2R_13645001 RAL-142 770 chr2R 13694596 13694654 chr2R 13694703 13694754 18 102 2.0 3.0 2.5 5.1 158 chr2R 13694596 intron fas + chr2R 13694675 intron fas + chr2R 13694754 intron fas + chr2R_18_13690001 chr2R_13690001 RAL-142 771 chr2R 13709813 13709852 chr2R 13709940 13709979 8 126 4.5 10.0 7.2 1.0 166 chr2R 13709813 intron fas + chr2R 13709896 intron fas + chr2R 13709979 intron fas + chr2R_8_13705001 chr2R_13705001 RAL-142 772 chr2R 13721192 13721222 chr2R 13721286 13721311 6 92 3.5 2.0 2.8 1.6 119 chr2R 13721192 intron fas + chr2R 13721252 intron fas + chr2R 13721311 intron fas + chr2R_6_13720001 chr2R_13720001 RAL-142 773 chr2R 13738907 13738929 chr2R 13739045 13739067 5 138 4.0 3.0 3.5 1.1 160 chr2R 13738907 intron fas + chr2R 13738987 intron fas + chr2R 13739067 intron fas + chr2R_5_13735001 chr2R_13735001 RAL-142 774 chr2R 13749477 13749526 chr2R 13749586 13749648 11 116 6.0 2.0 4.0 2.2 171 chr2R 13749477 intergenic fas + chr2R 13749562 intergenic fas + chr2R 13749648 intergenic fas + chr2R_11_13745001 chr2R_13745001 RAL-142 775 chr2R 13768957 13769000 chr2R 13769084 13769134 12 128 4.0 7.0 5.5 1.8 177 chr2R 13768957 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769134 intergenic not near genes chr2R_12_13765001 chr2R_13765001 RAL-142 776 chr2R 13793117 13793159 chr2R 13793226 13793262 8 100 4.0 2.0 3.0 2.0 145 chr2R 13793117 intergenic not near genes chr2R 13793190 intergenic not near genes chr2R 13793262 intergenic not near genes chr2R_8_13790001 chr2R_13790001 RAL-142 777 chr2R 13888755 13888793 chr2R 13888853 13888905 5 106 0.5 0.0 0.2 4.2 150 chr2R 13888755 intron shot - chr2R 13888830 intron shot - chr2R 13888905 intron shot - chr2R_5_13885001 chr2R_13885001 RAL-142 778 chr2R 13905572 13905581 chr2R 13907589 13907589 Rt1a 5 2013 16.5 5.5 11.0 0.4 2017 chr2R 13905572 intron shot - chr2R 13906580 intron shot - chr2R 13907589 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-142 779 chr2R 13905600 13905635 chr2R 13907583 13907606 Rt1a 15 1991 7.5 4.5 6.0 2.1 2006 chr2R 13905600 intron shot - chr2R 13906603 intron shot - chr2R 13907606 intron shot - chr2R_15_13905001 chr2R_13905001 RAL-142 780 chr2R 13922601 13922654 chr2R 13922707 13922755 7 104 1.0 6.5 3.8 1.5 154 chr2R 13922601 intron shot - chr2R 13922678 intron shot - chr2R 13922755 intron shot - chr2R_7_13920001 chr2R_13920001 RAL-142 781 chr2R 13942744 13942812 chr2R 13942870 13942890 12 93 0.5 6.5 3.5 2.7 146 chr2R 13942744 exon DJ-1alpha - chr2R 13942817 exon DJ-1alpha - chr2R 13942890 exon DJ-1alpha - chr2R_12_13940001 chr2R_13940001 RAL-142 782 chr2R 14003594 14003644 chr2R 14003726 14003776 14 129 2.5 2.5 2.5 4.0 182 chr2R 14003594 intron mam + chr2R 14003685 intron mam + chr2R 14003776 intron mam + chr2R_14_14000001 chr2R_14000001 RAL-142 783 chr2R 14037281 14037288 chr2R 14037369 14037396 4 106 0.5 9.0 4.8 0.7 115 chr2R 14037281 intron mam + chr2R 14037338 intron mam + chr2R 14037396 intron mam + chr2R_4_14035001 chr2R_14035001 RAL-142 784 chr2R 14093405 14093426 chr2R 14109587 14109596 4 16178 7.5 2.0 4.8 0.7 16191 chr2R 14093405 intron Prosap - chr2R 14101500 intron Prosap - chr2R 14109596 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-142 785 chr2R 14142316 14142469 chr2R 14142429 14142592 6 122 0.0 0.0 0.0 6.0 276 chr2R 14142316 intergenic not near genes chr2R 14142454 intergenic not near genes chr2R 14142592 intergenic not near genes chr2R_6_14140001 chr2R_14140001 RAL-142 786 chr2R 14285025 14285050 chr2R 14285141 14285182 10 127 8.5 5.0 6.8 1.3 157 chr2R 14285025 intron Ih + chr2R 14285104 intron Ih + chr2R 14285182 intron Ih + chr2R_10_14285001 chr2R_14285001 RAL-142 787 chr2R 14393829 14393898 chr2R 14393949 14393993 8 95 1.5 2.5 2.0 2.7 164 chr2R 14393829 intergenic not near genes chr2R 14393911 intergenic not near genes chr2R 14393993 intergenic not near genes chr2R_8_14390001 chr2R_14390001 RAL-142 788 chr2R 14467276 14467327 chr2R 14476469 14476500 roo 15 9180 2.0 2.0 2.0 5.0 9224 chr2R 14467276 intergenic not near genes chr2R 14471888 intergenic not near genes chr2R 14476500 5` UTR CR44462 + chr2R_15_14470001 chr2R_14470001 RAL-142 789 chr2R 14497370 14497388 chr2R 14498556 14498589 1360 7 1197 9.0 3.5 6.2 1.0 1219 chr2R 14497370 3` UTR Cpsf160 - chr2R 14497980 intron Cpsf160 - chr2R 14498589 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-142 790 chr2R 14497389 14497415 chr2R 14498555 14498598 1360 10 1194 5.5 3.0 4.2 1.9 1209 chr2R 14497389 3` UTR Cpsf160 - chr2R 14497994 intron Cpsf160 - chr2R 14498598 3` UTR Cpsf160 - chr2R_10_14495001 chr2R_14495001 RAL-142 791 chr2R 14514452 14514499 chr2R 14514580 14514627 9 124 2.0 4.0 3.0 2.2 175 chr2R 14514452 intron,exon Cpr51A -,CG30197 + chr2R 14514540 intron,intron Cpr51A -,CG30197 + chr2R 14514627 intron,intron Cpr51A -,CG30197 + chr2R_9_14510001 chr2R_14510001 RAL-142 792 chr2R 14530764 14530775 chr2R 14530838 14530890 6 100 1.0 2.0 1.5 2.4 126 chr2R 14530764 intron ttv + chr2R 14530827 intron ttv + chr2R 14530890 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-142 793 chr2R 14566413 14566471 chr2R 14566535 14566593 13 114 4.5 3.5 4.0 2.6 180 chr2R 14566413 intron ttv + chr2R 14566503 intron ttv + chr2R 14566593 intron ttv + chr2R_13_14565001 chr2R_14565001 RAL-142 794 chr2R 14634011 14634073 chr2R 14634130 14634135 14 101 7.5 2.5 5.0 2.3 124 chr2R 14634011 intergenic not near genes chr2R 14634073 intergenic not near genes chr2R 14634135 intergenic not near genes chr2R_14_14630001 chr2R_14630001 RAL-142 795 chr2R 14803443 14803504 chr2R 14803558 14803619 4 113 0.0 5.5 2.8 1.1 176 chr2R 14803443 intron kn - chr2R 14803531 intron kn - chr2R 14803619 intron kn - chr2R_4_14800001 chr2R_14800001 RAL-142 796 chr2R 14889183 14889230 chr2R 14897825 14897841 Max-element 5 8635 6.0 0.0 3.0 1.2 8658 chr2R 14889183 intergenic Cyp6a8 - chr2R 14893512 intergenic not near genes chr2R 14897841 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-142 797 chr2R 14906453 14906508 chr2R 14906598 14906630 17 138 5.0 5.5 5.2 2.7 177 chr2R 14906453 intron CG10249 - chr2R 14906542 intron CG10249 - chr2R 14906630 intron CG10249 - chr2R_17_14905001 chr2R_14905001 RAL-142 798 chr2R 14911674 14911680 chr2R 14911827 14911838 6 155 10.5 6.0 8.2 0.7 164 chr2R 14911674 intron CG10249 - chr2R 14911756 intron CG10249 - chr2R 14911838 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-142 799 chr2R 14911683 14911724 chr2R 14911823 14911882 22 154 4.0 5.5 4.8 3.8 199 chr2R 14911683 intron CG10249 - chr2R 14911782 intron CG10249 - chr2R 14911882 intron CG10249 - chr2R_22_14910001 chr2R_14910001 RAL-142 800 chr2R 14917829 14917854 chr2R 14917933 14917967 4 114 5.0 1.0 3.0 1.0 138 chr2R 14917829 intron CG10249 - chr2R 14917898 intron CG10249 - chr2R 14917967 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-142 801 chr2R 14919069 14919075 chr2R 14919185 14919191 4 116 5.0 0.0 2.5 1.1 122 chr2R 14919069 intron CG10249 - chr2R 14919130 intron CG10249 - chr2R 14919191 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-142 802 chr2R 14922124 14922172 chr2R 14922229 14922276 9 108 3.0 5.0 4.0 1.8 152 chr2R 14922124 intron CG10249 - chr2R 14922200 intron CG10249 - chr2R 14922276 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-142 803 chr2R 14985434 14985477 chr2R 14985533 14985536 9 90 2.0 5.0 3.5 2.0 102 chr2R 14985434 intron pcs + chr2R 14985485 intron pcs + chr2R 14985536 intron pcs + chr2R_9_14985001 chr2R_14985001 RAL-142 804 chr2R 14998481 14998511 chr2R 14998656 14998681 10 174 3.5 5.0 4.2 1.9 200 chr2R 14998481 intergenic not near genes chr2R 14998581 intergenic not near genes chr2R 14998681 intergenic not near genes chr2R_10_14995001 chr2R_14995001 RAL-142 805 chr2R 15004685 15004750 chr2R 15005055 15005114 jockey 12 363 3.5 6.0 4.8 2.1 429 chr2R 15004685 intergenic not near genes chr2R 15004900 intergenic not near genes chr2R 15005114 intergenic not near genes chr2R_12_15000001 chr2R_15000001 RAL-142 806 chr2R 15015452 15015462 chr2R 15022886 15022921 mdg1 4 7450 4.5 6.0 5.2 0.6 7469 chr2R 15015452 intron hbs + chr2R 15019186 intron hbs + chr2R 15022921 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-142 807 chr2R 15015466 15015483 chr2R 15022885 15022942 mdg1 5 7449 2.5 6.0 4.2 1.0 7476 chr2R 15015466 intron hbs + chr2R 15019204 intron hbs + chr2R 15022942 intron hbs + chr2R_5_15015001 chr2R_15015001 RAL-142 808 chr2R 15027490 15027520 chr2R 15027583 15027583 7 90 1.0 6.0 3.5 1.6 93 chr2R 15027490 intron hbs + chr2R 15027536 intron hbs + chr2R 15027583 intron hbs + chr2R_7_15025001 chr2R_15025001 RAL-142 809 chr2R 15051479 15051489 chr2R 15051628 15051664 8 167 4.5 8.0 6.2 1.1 185 chr2R 15051479 intergenic not near genes chr2R 15051572 intergenic not near genes chr2R 15051664 intergenic not near genes chr2R_8_15050001 chr2R_15050001 RAL-142 810 chr2R 15084945 15084983 chr2R 15092027 15092062 297 14 7078 5.0 4.5 4.8 2.4 7117 chr2R 15084945 intergenic not near genes chr2R 15088504 intergenic not near genes chr2R 15092062 5` UTR CR44457 + chr2R_14_15085001 chr2R_15085001 RAL-142 811 chr2R 15119288 15119347 chr2R 15127803 15127807 Tirant 4 8490 2.0 2.5 2.2 1.2 8519 chr2R 15119288 intron chn + chr2R 15123548 intron chn + chr2R 15127807 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-142 812 chr2R 15133472 15133515 chr2R 15133566 15133579 10 98 16.0 14.5 15.2 0.6 107 chr2R 15133472 intron chn + chr2R 15133526 intron chn + chr2R 15133579 intron chn + chr2R_10_15130001 chr2R_15130001 RAL-142 813 chr2R 15137942 15138001 chr2R 15138051 15138095 6 104 12.5 8.5 10.5 0.5 153 chr2R 15137942 intron chn + chr2R 15138018 intron chn + chr2R 15138095 intron chn + chr2R_6_15135001 chr2R_15135001 RAL-142 814 chr2R 15201204 15201253 chr2R 15201330 15201378 5 125 1.0 3.0 2.0 1.7 174 chr2R 15201204 intergenic GPHR -,CG11807 + chr2R 15201291 5` UTR CG11807 + chr2R 15201378 intron CG11807 + chr2R_5_15200001 chr2R_15200001 RAL-142 815 chr2R 15235051 15235081 chr2R 15235209 15235233 4 154 9.5 9.5 9.5 0.4 182 chr2R 15235051 intron Fs - chr2R 15235142 intron Fs - chr2R 15235233 intron Fs - chr2R_4_15235001 chr2R_15235001 RAL-142 816 chr2R 15259045 15259074 chr2R 15259164 15259193 4 119 3.5 6.5 5.0 0.7 148 chr2R 15259045 intron ItgalphaPS4 + chr2R 15259119 intron ItgalphaPS4 + chr2R 15259193 intron ItgalphaPS4 + chr2R_4_15255001 chr2R_15255001 RAL-142 817 chr2R 15283239 15283277 chr2R 15283369 15283370 4 121 16.5 21.0 18.8 0.2 131 chr2R 15283239 intron Trpm - chr2R 15283304 intron Trpm - chr2R 15283370 intron Trpm - chr2R_4_15280001 chr2R_15280001 RAL-142 818 chr2R 15330172 15330228 chr2R 15330341 15330397 16 163 3.0 4.5 3.8 3.3 225 chr2R 15330172 intergenic CR44371 - chr2R 15330284 intergenic CR44371 - chr2R 15330397 3` UTR CR44371 - chr2R_16_15330001 chr2R_15330001 RAL-142 819 chr2R 15374797 15375060 chr2R 15374904 15375191 4 132 2.5 2.5 2.5 1.1 394 chr2R 15374797 intergenic not near genes chr2R 15374994 intergenic not near genes chr2R 15375191 intergenic not near genes chr2R_4_15370001 chr2R_15370001 RAL-142 820 chr2R 15606112 15606130 chr2R 15606221 15606240 8 111 10.0 5.0 7.5 0.9 128 chr2R 15606112 intergenic not near genes chr2R 15606176 intergenic not near genes chr2R 15606240 intergenic not near genes chr2R_8_15605001 chr2R_15605001 RAL-142 821 chr2R 15696484 15696548 chr2R 15696642 15696706 13 151 9.0 7.5 8.2 1.4 222 chr2R 15696484 intergenic CG33461 +,CG33462 + chr2R 15696595 intergenic CG33461 +,CG33462 + chr2R 15696706 intergenic CG33462 +,CG33461 + chr2R_13_15695001 chr2R_15695001 RAL-142 822 chr2R 15710417 15710436 chr2R 15710697 15710716 5 278 8.5 13.0 10.8 0.4 299 chr2R 15710417 intergenic not near genes chr2R 15710566 intergenic not near genes chr2R 15710716 intergenic not near genes chr2R_5_15710001 chr2R_15710001 RAL-142 823 chr2R 15710441 15710444 chr2R 15710692 15710724 5 270 8.5 10.0 9.2 0.5 283 chr2R 15710441 intergenic not near genes chr2R 15710582 intergenic not near genes chr2R 15710724 intergenic not near genes chr2R_5_15710001 chr2R_15710001 RAL-142 824 chr2R 15756773 15756840 chr2R 15756899 15756910 18 114 10.5 11.0 10.8 1.5 137 chr2R 15756773 intron CG30089 + chr2R 15756842 intron CG30089 + chr2R 15756910 intron CG30089 + chr2R_18_15755001 chr2R_15755001 RAL-142 825 chr2R 15828115 15828155 chr2R 15828310 15828318 11 191 0.0 2.5 1.2 5.0 203 chr2R 15828115 intron,intron tun +,Poxn - chr2R 15828216 intron,intron tun +,Poxn - chr2R 15828318 intron,intron tun +,Poxn - chr2R_11_15825001 chr2R_15825001 RAL-142 826 chr2R 15869300 15869361 chr2R 15869415 15869476 6 114 18.0 17.0 17.5 0.3 176 chr2R 15869300 intergenic Rif1 -,sli - chr2R 15869388 intergenic sli -,Rif1 - chr2R 15869476 intergenic sli -,Rif1 - chr2R_6_15865001 chr2R_15865001 RAL-142 827 chr2R 15891783 15891835 chr2R 15891894 15891946 14 110 13.0 15.5 14.2 0.9 163 chr2R 15891783 intron sli - chr2R 15891864 intron sli - chr2R 15891946 intron sli - chr2R_14_15890001 chr2R_15890001 RAL-142 828 chr2R 16061699 16061712 chr2R 16064362 16064377 Burdock 4 2664 4.5 2.5 3.5 0.9 2678 chr2R 16061699 intergenic not near genes chr2R 16063038 intergenic not near genes chr2R 16064377 intergenic not near genes chr2R_4_16060001 chr2R_16060001 RAL-142 829 chr2R 16245408 16245415 chr2R 16245523 16245544 6 121 10.0 15.0 12.5 0.4 136 chr2R 16245408 intron CngA - chr2R 16245476 intron CngA - chr2R 16245544 intron CngA - chr2R_6_16245001 chr2R_16245001 RAL-142 830 chr2R 16245427 16245655 chr2R 16245513 16245777 16 120 25.0 12.0 18.5 0.8 350 chr2R 16245427 intron CngA - chr2R 16245602 intron CngA - chr2R 16245777 intron CngA - chr2R_16_16245001 chr2R_16245001 RAL-142 831 chr2R 16279357 16279407 chr2R 16279469 16279527 11 113 0.0 5.5 2.8 2.9 170 chr2R 16279357 intergenic not near genes chr2R 16279442 intergenic not near genes chr2R 16279527 intergenic CG15704 + chr2R_11_16275001 chr2R_16275001 RAL-142 832 chr2R 16289572 16289620 chr2R 16289699 16289749 7 126 3.5 4.5 4.0 1.4 177 chr2R 16289572 intron,exon CR43730 -,JhI-26 + chr2R 16289660 intron,intron CR43730 -,JhI-26 + chr2R 16289749 3` UTR,intron CR43730 -,JhI-26 + chr2R_7_16285001 chr2R_16285001 RAL-142 833 chr2R 16380100 16380133 chr2R 16380233 16380265 5 129 8.5 3.5 6.0 0.7 165 chr2R 16380100 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380182 3` UTR CR45317 - chr2R 16380265 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_5_16380001 chr2R_16380001 RAL-142 834 chr2R 16387508 16387541 chr2R 16387989 16388047 6 500 2.5 7.0 4.8 1.0 539 chr2R 16387508 intron Sema-2b + chr2R 16387778 intron Sema-2b + chr2R 16388047 intron Sema-2b + chr2R_6_16385001 chr2R_16385001 RAL-142 835 chr2R 16539621 16539657 chr2R 16544865 16544900 copia 6 5238 5.0 1.5 3.2 1.4 5279 chr2R 16539621 intergenic not near genes chr2R 16542260 intergenic not near genes chr2R 16544900 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-142 836 chr2R 16571845 16571906 chr2R 16571969 16572020 12 125 6.0 9.0 7.5 1.4 175 chr2R 16571845 intergenic CG4927 + chr2R 16571932 intergenic CG4927 + chr2R 16572020 intergenic CG4927 + chr2R_12_16570001 chr2R_16570001 RAL-142 837 chr2R 16775588 16775644 chr2R 16775941 16775995 10 343 10.5 8.0 9.2 1.0 407 chr2R 16775588 3` UTR Arp53D + chr2R 16775792 intergenic Arp53D + chr2R 16775995 intergenic Arp53D + chr2R_10_16775001 chr2R_16775001 RAL-142 838 chr2R 16787447 16787490 chr2R 16787564 16787564 7 109 2.5 4.0 3.2 1.7 117 chr2R 16787447 intron CG5522 + chr2R 16787506 intron CG5522 + chr2R 16787564 intron CG5522 + chr2R_7_16785001 chr2R_16785001 RAL-142 839 chr2R 16885059 16885096 chr2R 16885159 16885211 5 105 11.5 8.5 10.0 0.5 152 chr2R 16885059 intron CG8910 - chr2R 16885135 intron CG8910 - chr2R 16885211 intron CG8910 - chr2R_5_16885001 chr2R_16885001 RAL-142 840 chr2R 17079030 17079078 chr2R 17079147 17079194 8 117 4.5 4.5 4.5 1.5 164 chr2R 17079030 intron CG30460 - chr2R 17079112 intron CG30460 - chr2R 17079194 intron CG30460 - chr2R_8_17075001 chr2R_17075001 RAL-142 841 chr2R 17087434 17087443 chr2R 17087547 17087556 5 112 13.5 6.0 9.8 0.5 122 chr2R 17087434 5` UTR CG30460 - chr2R 17087495 5` UTR CG30460 - chr2R 17087556 5` UTR CG30460 - chr2R_5_17085001 chr2R_17085001 RAL-142 842 chr2R 17087454 17087496 chr2R 17087545 17087554 9 93 5.0 6.0 5.5 1.4 100 chr2R 17087454 5` UTR CG30460 - chr2R 17087504 5` UTR CG30460 - chr2R 17087554 5` UTR CG30460 - chr2R_9_17085001 chr2R_17085001 RAL-142 843 chr2R 17097527 17097547 chr2R 17097615 17097659 4 106 8.5 9.0 8.8 0.4 132 chr2R 17097527 5` UTR GstS1 - chr2R 17097593 intron GstS1 - chr2R 17097659 intron GstS1 - chr2R_4_17095001 chr2R_17095001 RAL-142 844 chr2R 17139392 17139404 chr2R 17139567 17139579 6 175 1.5 6.0 3.8 1.2 187 chr2R 17139392 3` UTR CG11395 + chr2R 17139486 3` UTR,3` UTR CG11395 +,CG43103 - chr2R 17139579 3` UTR,3` UTR CG11395 +,CG43103 - chr2R_6_17135001 chr2R_17135001 RAL-142 845 chr2R 17147213 17147247 chr2R 17152279 17152308 jockey 7 5065 4.5 5.0 4.8 1.2 5095 chr2R 17147213 intergenic not near genes chr2R 17149760 intergenic not near genes chr2R 17152308 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-142 846 chr2R 17225284 17225307 chr2R 17225379 17225406 5 100 18.0 18.5 18.2 0.3 122 chr2R 17225284 intron mbl + chr2R 17225345 intron mbl + chr2R 17225406 intron mbl + chr2R_5_17225001 chr2R_17225001 RAL-142 847 chr2R 17236482 17236517 chr2R 17241715 17241742 copia 9 5233 7.0 4.0 5.5 1.4 5260 chr2R 17236482 intron mbl + chr2R 17239112 intron mbl + chr2R 17241742 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-142 848 chr2R 17419906 17419959 chr2R 17420022 17420072 4 115 20.0 20.5 20.2 0.2 166 chr2R 17419906 5` UTR cnk - chr2R 17419989 5` UTR cnk - chr2R 17420072 intergenic cnk -,l(2)k01209 + chr2R_4_17415001 chr2R_17415001 RAL-142 849 chr2R 17438009 17438036 chr2R 17438120 17438127 7 107 21.5 20.5 21.0 0.3 118 chr2R 17438009 intron EDTP - chr2R 17438068 intron EDTP - chr2R 17438127 intron EDTP - chr2R_7_17435001 chr2R_17435001 RAL-142 850 chr2R 17453653 17453684 chr2R 17453787 17453807 6 131 3.0 2.5 2.8 1.6 154 chr2R 17453653 intron CG10764 + chr2R 17453730 intron CG10764 + chr2R 17453807 intron CG10764 + chr2R_6_17450001 chr2R_17450001 RAL-142 851 chr2R 17458989 17459016 chr2R 17459099 17459136 10 119 13.0 14.5 13.8 0.7 147 chr2R 17458989 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459136 intron CG14478 + chr2R_10_17455001 chr2R_17455001 RAL-142 852 chr2R 17470322 17470344 chr2R 17470437 17470459 4 114 17.0 13.5 15.2 0.2 137 chr2R 17470322 intron qkr54B + chr2R 17470390 intron qkr54B + chr2R 17470459 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-142 853 chr2R 17485887 17485950 chr2R 17490684 17490752 F-element 10 4794 4.5 1.5 3.0 2.5 4865 chr2R 17485887 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488320 intron NT5E-2 + chr2R 17490752 intron NT5E-2 + chr2R_10_17485001 chr2R_17485001 RAL-142 854 chr2R 17500627 17500687 chr2R 17500738 17500798 6 107 12.5 11.0 11.8 0.5 171 chr2R 17500627 intergenic not near genes chr2R 17500712 intergenic not near genes chr2R 17500798 intergenic not near genes chr2R_6_17500001 chr2R_17500001 RAL-142 855 chr2R 17679572 17679603 chr2R 17679734 17679765 6 162 0.0 0.5 0.2 5.0 193 chr2R 17679572 intron Sema-1b - chr2R 17679668 intron Sema-1b - chr2R 17679765 intron Sema-1b - chr2R_6_17675001 chr2R_17675001 RAL-142 856 chr2R 17708374 17708419 chr2R 17708479 17708534 4 113 12.5 18.0 15.2 0.2 160 chr2R 17708374 intron CG6424 - chr2R 17708454 intron CG6424 - chr2R 17708534 intron CG6424 - chr2R_4_17705001 chr2R_17705001 RAL-142 857 chr2R 17709957 17710117 chr2R 17710078 17710220 15 116 2.0 1.0 1.5 6.0 263 chr2R 17709957 intron CG6424 - chr2R 17710088 intron CG6424 - chr2R 17710220 intron CG6424 - chr2R_15_17710001 chr2R_17710001 RAL-142 858 chr2R 17782385 17782393 chr2R 17783623 17783631 pogo 5 1238 7.0 10.5 8.8 0.5 1246 chr2R 17782385 intergenic CG33981 -,fab1 - chr2R 17783008 intergenic not near genes chr2R 17783631 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-142 859 chr2R 17783993 17784055 chr2R 17784266 17784304 pogo 14 262 2.5 4.5 3.5 3.1 311 chr2R 17783993 intergenic mir-31a - chr2R 17784148 intergenic mir-31a - chr2R 17784304 intergenic mir-31a - chr2R_14_17780001 chr2R_17780001 RAL-142 860 chr2R 17794749 17794785 chr2R 17794863 17794895 14 111 8.0 8.5 8.2 1.5 146 chr2R 17794749 intron Dhit + chr2R 17794822 intron Dhit + chr2R 17794895 intron Dhit + chr2R_14_17790001 chr2R_17790001 RAL-142 861 chr2R 17805687 17805725 chr2R 17805950 17805971 5 259 7.5 5.5 6.5 0.7 284 chr2R 17805687 intron grh + chr2R 17805829 intron grh + chr2R 17805971 intron grh + chr2R_5_17805001 chr2R_17805001 RAL-142 862 chr2R 17846761 17846813 chr2R 17846868 17846912 12 109 17.0 16.0 16.5 0.7 151 chr2R 17846761 intron,5` UTR olf186-F +,olf186-M + chr2R 17846836 intron,5` UTR olf186-F +,olf186-M + chr2R 17846912 intron,5` UTR olf186-F +,olf186-M + chr2R_12_17845001 chr2R_17845001 RAL-142 863 chr2R 17849764 17849821 chr2R 17849964 17850013 4 198 12.5 14.5 13.5 0.3 249 chr2R 17849764 intron olf186-F + chr2R 17849888 intron olf186-F + chr2R 17850013 intron olf186-F + chr2R_4_17845001 chr2R_17845001 RAL-142 864 chr2R 17853284 17853322 chr2R 17853677 17853721 6 384 33.0 29.0 31.0 0.2 437 chr2R 17853284 intron olf186-F + chr2R 17853502 intron,exon olf186-F +,CG30323 + chr2R 17853721 intron,exon olf186-F +,CG30323 + chr2R_6_17850001 chr2R_17850001 RAL-142 865 chr2R 17921426 17921469 chr2R 17921537 17921584 6 114 3.5 7.0 5.2 1.0 158 chr2R 17921426 intron Elk + chr2R 17921505 intron Elk + chr2R 17921584 intron Elk + chr2R_6_17920001 chr2R_17920001 RAL-142 866 chr2R 17973795 17973834 chr2R 17973883 17973896 7 96 10.5 11.5 11.0 0.6 101 chr2R 17973795 intergenic not near genes chr2R 17973846 intergenic not near genes chr2R 17973896 intergenic not near genes chr2R_7_17970001 chr2R_17970001 RAL-142 867 chr2R 18045637 18045700 chr2R 18046024 18046087 jockey 18 386 5.5 7.0 6.2 2.5 450 chr2R 18045637 intergenic not near genes chr2R 18045862 intergenic not near genes chr2R 18046087 intergenic CG5767 - chr2R_18_18045001 chr2R_18045001 RAL-142 868 chr2R 18111660 18111700 chr2R 18115563 18115603 F-element 5 3900 2.0 4.0 3.0 1.2 3943 chr2R 18111660 intergenic not near genes chr2R 18113632 intergenic not near genes chr2R 18115603 intergenic not near genes chr2R_5_18110001 chr2R_18110001 RAL-142 869 chr2R 18124307 18124361 chr2R 18124417 18124455 6 104 32.5 31.0 31.8 0.2 148 chr2R 18124307 intron stau - chr2R 18124381 intron stau - chr2R 18124455 intron stau - chr2R_6_18120001 chr2R_18120001 RAL-142 870 chr2R 18314391 18314427 chr2R 18314490 18314540 5 107 0.5 2.0 1.2 2.3 149 chr2R 18314391 intron sbb - chr2R 18314466 intron sbb - chr2R 18314540 intron sbb - chr2R_5_18310001 chr2R_18310001 RAL-142 871 chr2R 18358372 18358394 chr2R 18372609 18372615 roo 10 14241 11.0 6.0 8.5 1.1 14243 chr2R 18358372 intergenic not near genes chr2R 18365494 intergenic not near genes chr2R 18372615 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-142 872 chr2R 18358397 18358423 chr2R 18372599 18372635 roo 11 14229 7.0 4.0 5.5 1.7 14238 chr2R 18358397 intergenic not near genes chr2R 18365516 intergenic not near genes chr2R 18372635 intergenic not near genes chr2R_11_18365001 chr2R_18365001 RAL-142 873 chr2R 18398141 18398172 chr2R 18398270 18398301 5 129 20.5 17.5 19.0 0.2 160 chr2R 18398141 intron GstE10 - chr2R 18398221 intron GstE10 - chr2R 18398301 intron GstE10 - chr2R_5_18395001 chr2R_18395001 RAL-142 874 chr2R 18405721 18405779 chr2R 18405837 18405894 10 112 3.0 0.0 1.5 4.0 173 chr2R 18405721 intergenic GstE6 +,GstE5 + chr2R 18405808 intergenic GstE6 +,GstE5 + chr2R 18405894 intergenic GstE6 + chr2R_10_18405001 chr2R_18405001 RAL-142 875 chr2R 18466305 18466321 chr2R 18466405 18466448 4 116 15.5 15.0 15.2 0.2 143 chr2R 18466305 intron CG30116 - chr2R 18466376 intron CG30116 - chr2R 18466448 intron CG30116 - chr2R_4_18465001 chr2R_18465001 RAL-142 876 chr2R 18471907 18471927 chr2R 18472018 18472037 6 111 8.5 6.0 7.2 0.7 130 chr2R 18471907 intron CG30116 - chr2R 18471972 intron CG30116 - chr2R 18472037 intron CG30116 - chr2R_6_18470001 chr2R_18470001 RAL-142 877 chr2R 18484648 18484711 chr2R 18484799 18484862 17 144 13.0 8.5 10.8 1.4 214 chr2R 18484648 intron CG30116 - chr2R 18484755 intron CG30116 - chr2R 18484862 intron CG30116 - chr2R_17_18480001 chr2R_18480001 RAL-142 878 chr2R 18486840 18486865 chr2R 18487110 18487160 10 281 12.0 7.0 9.5 1.0 320 chr2R 18486840 intron CG30116 - chr2R 18487000 intron CG30116 - chr2R 18487160 intron CG30116 - chr2R_10_18485001 chr2R_18485001 RAL-142 879 chr2R 18486867 18486872 chr2R 18487108 18487158 4 273 11.5 7.0 9.2 0.4 291 chr2R 18486867 intron CG30116 - chr2R 18487012 intron CG30116 - chr2R 18487158 intron CG30116 - chr2R_4_18485001 chr2R_18485001 RAL-142 880 chr2R 18487811 18487825 chr2R 18495297 18495297 blood 4 7482 2.0 5.5 3.8 0.8 7486 chr2R 18487811 intron CG30116 - chr2R 18491554 intron CG30116 - chr2R 18495297 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-142 881 chr2R 18511553 18511611 chr2R 18511673 18511722 4 118 7.5 5.5 6.5 0.5 169 chr2R 18511553 intergenic not near genes chr2R 18511638 intergenic not near genes chr2R 18511722 intergenic not near genes chr2R_4_18510001 chr2R_18510001 RAL-142 882 chr2R 18528181 18528218 chr2R 18528278 18528283 9 85 10.5 3.0 6.8 1.2 102 chr2R 18528181 intron CG10924 + chr2R 18528232 intron CG10924 + chr2R 18528283 intron CG10924 + chr2R_9_18525001 chr2R_18525001 RAL-142 883 chr2R 18575785 18575830 chr2R 18581984 18582038 3S18 18 6202 5.5 4.0 4.8 3.1 6253 chr2R 18575785 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582038 intron GEFmeso - chr2R_18_18575001 chr2R_18575001 RAL-142 884 chr2R 18590839 18590897 chr2R 18600021 18600029 roo 20 9168 2.5 2.0 2.2 6.2 9190 chr2R 18590839 intron GEFmeso - chr2R 18595434 intron GEFmeso - chr2R 18600029 intron GEFmeso - chr2R_20_18595001 chr2R_18595001 RAL-142 885 chr2R 18608599 18608652 chr2R 18608710 18608749 11 92 6.5 6.5 6.5 1.5 150 chr2R 18608599 intron GEFmeso - chr2R 18608674 intron GEFmeso - chr2R 18608749 intron GEFmeso - chr2R_11_18605001 chr2R_18605001 RAL-142 886 chr2R 18692888 18692912 chr2R 18692993 18693004 4 106 19.0 14.5 16.8 0.2 116 chr2R 18692888 intron Sik3 + chr2R 18692946 intron Sik3 + chr2R 18693004 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-142 887 chr2R 18698567 18698609 chr2R 18698663 18698716 6 92 5.0 7.0 6.0 0.9 149 chr2R 18698567 intron Sik3 + chr2R 18698642 intron Sik3 + chr2R 18698716 intron Sik3 + chr2R_6_18695001 chr2R_18695001 RAL-142 888 chr2R 18713209 18713223 chr2R 18713321 18713335 4 112 9.0 11.0 10.0 0.4 126 chr2R 18713209 intergenic not near genes chr2R 18713272 intergenic not near genes chr2R 18713335 intergenic not near genes chr2R_4_18710001 chr2R_18710001 RAL-142 889 chr2R 18713225 18713270 chr2R 18713313 18713382 19 102 7.0 9.5 8.2 2.1 157 chr2R 18713225 intergenic not near genes chr2R 18713304 intergenic not near genes chr2R 18713382 intergenic not near genes chr2R_19_18710001 chr2R_18710001 RAL-142 890 chr2R 18827691 18827722 chr2R 18827801 18827837 9 110 15.5 21.5 18.5 0.5 146 chr2R 18827691 intron CG15097 - chr2R 18827764 intron CG15097 - chr2R 18827837 intron CG15097 - chr2R_9_18825001 chr2R_18825001 RAL-142 891 chr2R 18835867 18835904 chr2R 18835984 18836016 10 113 5.0 0.0 2.5 2.9 149 chr2R 18835867 intron CG15083 + chr2R 18835942 intron CG15083 + chr2R 18836016 intron CG15083 + chr2R_10_18835001 chr2R_18835001 RAL-142 892 chr2R 18892334 18892366 chr2R 18892554 18892577 6 220 13.5 9.5 11.5 0.5 243 chr2R 18892334 intron sano + chr2R 18892456 intron sano + chr2R 18892577 intron sano + chr2R_6_18890001 chr2R_18890001 RAL-142 893 chr2R 18953137 18953191 chr2R 18953258 18953306 5 112 3.5 4.5 4.0 1.0 169 chr2R 18953137 intron sano + chr2R 18953222 intron sano + chr2R 18953306 intron sano + chr2R_5_18950001 chr2R_18950001 RAL-142 894 chr2R 18964886 18964939 chr2R 18964996 18965050 16 109 6.5 5.5 6.0 2.3 164 chr2R 18964886 intergenic not near genes chr2R 18964968 intergenic not near genes chr2R 18965050 intergenic not near genes chr2R_16_18960001 chr2R_18960001 RAL-142 895 chr2R 18989004 18989026 chr2R 18989117 18989127 4 110 0.5 1.5 1.0 2.0 123 chr2R 18989004 intron tn + chr2R 18989066 intron tn + chr2R 18989127 intron tn + chr2R_4_18985001 chr2R_18985001 RAL-142 896 chr2R 18992017 18992044 chr2R 18992173 18992209 8 171 3.5 6.5 5.0 1.3 192 chr2R 18992017 intron tn + chr2R 18992113 intron tn + chr2R 18992209 intron tn + chr2R_8_18990001 chr2R_18990001 RAL-142 897 chr2R 19025312 19025332 chr2R 19025550 19025598 4 247 7.0 10.0 8.5 0.4 286 chr2R 19025312 intron 5-HT1B - chr2R 19025455 intron 5-HT1B - chr2R 19025598 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-142 898 chr2R 19026021 19026058 chr2R 19026155 19026193 7 135 11.0 1.5 6.2 1.0 172 chr2R 19026021 intron 5-HT1B - chr2R 19026107 intron 5-HT1B - chr2R 19026193 intron 5-HT1B - chr2R_7_19025001 chr2R_19025001 RAL-142 899 chr2R 19067693 19067703 chr2R 19067804 19067814 4 110 12.5 6.5 9.5 0.4 121 chr2R 19067693 intron 5-HT1A + chr2R 19067754 intron 5-HT1A + chr2R 19067814 intron 5-HT1A + chr2R_4_19065001 chr2R_19065001 RAL-142 900 chr2R 19067708 19067746 chr2R 19067802 19067840 4 98 8.5 6.5 7.5 0.5 132 chr2R 19067708 intron 5-HT1A + chr2R 19067774 intron 5-HT1A + chr2R 19067840 intron 5-HT1A + chr2R_4_19065001 chr2R_19065001 RAL-142 901 chr2R 19116780 19116844 chr2R 19116911 19116963 6 116 21.0 18.5 19.8 0.3 183 chr2R 19116780 intron 5-HT1A + chr2R 19116872 intron 5-HT1A + chr2R 19116963 intron 5-HT1A + chr2R_6_19115001 chr2R_19115001 RAL-142 902 chr2R 19167624 19167659 chr2R 19168047 19168072 4 419 20.0 12.0 16.0 0.2 448 chr2R 19167624 intron CG10737 + chr2R 19167848 intron CG10737 + chr2R 19168072 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-142 903 chr2R 19264010 19264032 chr2R 19264128 19264138 4 112 11.5 4.0 7.8 0.5 128 chr2R 19264010 intergenic not near genes chr2R 19264074 intergenic not near genes chr2R 19264138 intergenic not near genes chr2R_4_19260001 chr2R_19260001 RAL-142 904 chr2R 19274918 19274967 chr2R 19275021 19275048 6 98 21.5 21.5 21.5 0.3 130 chr2R 19274918 intron rib + chr2R 19274983 intron rib + chr2R 19275048 intron rib + chr2R_6_19270001 chr2R_19270001 RAL-142 905 chr2R 19331218 19331244 chr2R 19331317 19331344 7 98 10.0 11.5 10.8 0.6 126 chr2R 19331218 intron,intron Rgk1 -,CG34045 + chr2R 19331281 intron,intron Rgk1 -,CG34045 + chr2R 19331344 intron,intron Rgk1 -,CG34045 + chr2R_7_19330001 chr2R_19330001 RAL-142 906 chr2R 19373684 19373707 chr2R 19373870 19373902 7 197 12.5 14.0 13.2 0.5 218 chr2R 19373684 5` UTR CG9416 - chr2R 19373793 intergenic CG9416 - chr2R 19373902 intergenic CG9416 - chr2R_7_19370001 chr2R_19370001 RAL-142 907 chr2R 19536436 19536467 chr2R 19536553 19536584 6 116 11.5 6.0 8.8 0.6 148 chr2R 19536436 intron sm - chr2R 19536510 intron sm - chr2R 19536584 intron sm - chr2R_6_19535001 chr2R_19535001 RAL-142 908 chr2R 19536469 19536500 chr2R 19536549 19536559 9 104 4.5 4.0 4.2 1.7 90 chr2R 19536469 intron sm - chr2R 19536514 intron sm - chr2R 19536559 intron sm - chr2R_9_19535001 chr2R_19535001 RAL-142 909 chr2R 19575551 19575580 chr2R 19575664 19575693 5 113 8.5 8.0 8.2 0.5 142 chr2R 19575551 intron sm - chr2R 19575622 intron sm - chr2R 19575693 intron sm - chr2R_5_19575001 chr2R_19575001 RAL-142 910 chr2R 19699864 19699922 chr2R 19699984 19700036 7 119 4.0 2.5 3.2 1.7 172 chr2R 19699864 intergenic Obp56c - chr2R 19699950 intergenic Obp56c - chr2R 19700036 3` UTR Obp56c - chr2R_7_19695001 chr2R_19695001 RAL-142 911 chr2R 19701499 19701545 chr2R 19701618 19701662 5 111 7.5 7.0 7.2 0.6 163 chr2R 19701499 intergenic Obp56c - chr2R 19701580 intergenic Obp56c - chr2R 19701662 intergenic not near genes chr2R_5_19700001 chr2R_19700001 RAL-142 912 chr2R 19776574 19776617 chr2R 19779917 19779962 jockey 19 3348 6.0 7.5 6.8 2.4 3388 chr2R 19776574 intergenic not near genes chr2R 19778268 intergenic not near genes chr2R 19779962 intergenic not near genes chr2R_19_19775001 chr2R_19775001 RAL-142 913 chr2R 19807660 19807700 chr2R 19807774 19807797 5 112 19.5 16.5 18.0 0.3 137 chr2R 19807660 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807797 intergenic not near genes chr2R_5_19805001 chr2R_19805001 RAL-142 914 chr2R 19914815 19914869 chr2R 19922262 19922297 mdg1 13 7434 6.5 3.5 5.0 2.2 7482 chr2R 19914815 intergenic not near genes chr2R 19918556 intergenic not near genes chr2R 19922297 intergenic not near genes chr2R_13_19915001 chr2R_19915001 RAL-142 915 chr2R 19925989 19926026 chr2R 19926107 19926138 6 117 19.0 19.5 19.2 0.3 149 chr2R 19925989 intergenic CR44626 - chr2R 19926064 intergenic CR44626 - chr2R 19926138 intergenic CR44626 - chr2R_6_19925001 chr2R_19925001 RAL-142 916 chr2R 19957440 19957461 chr2R 19962636 19962690 copia 5 5212 2.5 4.5 3.5 1.1 5250 chr2R 19957440 intergenic CG44623 + chr2R 19960065 intergenic not near genes chr2R 19962690 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-142 917 chr2R 19976388 19976415 chr2R 19976818 19976839 5 422 6.5 11.0 8.8 0.5 451 chr2R 19976388 intergenic not near genes chr2R 19976614 intergenic not near genes chr2R 19976839 intergenic not near genes chr2R_5_19975001 chr2R_19975001 RAL-142 918 chr2R 20009490 20009529 chr2R 20009578 20009631 5 103 2.0 4.5 3.2 1.2 141 chr2R 20009490 intergenic not near genes chr2R 20009560 intergenic not near genes chr2R 20009631 intergenic not near genes chr2R_5_20005001 chr2R_20005001 RAL-142 919 chr2R 20080601 20080622 chr2R 20080712 20080716 4 103 0.0 3.0 1.5 1.6 115 chr2R 20080601 intergenic not near genes chr2R 20080658 intergenic not near genes chr2R 20080716 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-142 920 chr2R 20101834 20101856 chr2R 20101951 20101973 5 114 19.5 12.0 15.8 0.3 139 chr2R 20101834 intergenic not near genes chr2R 20101904 intergenic not near genes chr2R 20101973 intergenic not near genes chr2R_5_20100001 chr2R_20100001 RAL-142 921 chr2R 20101861 20101884 chr2R 20101946 20102001 6 107 16.5 12.5 14.5 0.4 140 chr2R 20101861 intergenic not near genes chr2R 20101931 intergenic not near genes chr2R 20102001 intergenic not near genes chr2R_6_20100001 chr2R_20100001 RAL-142 922 chr2R 20142418 20142440 chr2R 20142532 20142533 6 110 2.0 4.0 3.0 1.5 115 chr2R 20142418 intergenic not near genes chr2R 20142476 intergenic not near genes chr2R 20142533 intergenic not near genes chr2R_6_20140001 chr2R_20140001 RAL-142 923 chr2R 20226132 20226174 chr2R 20226253 20226295 8 120 7.5 0.0 3.8 1.7 163 chr2R 20226132 intergenic not near genes chr2R 20226214 intergenic not near genes chr2R 20226295 intergenic not near genes chr2R_8_20225001 chr2R_20225001 RAL-142 924 chr2R 20515231 20515256 chr2R 20515300 20515339 4 72 3.0 0.5 1.8 1.4 108 chr2R 20515231 intergenic not near genes chr2R 20515285 intergenic not near genes chr2R 20515339 intergenic not near genes chr2R_4_20515001 chr2R_20515001 RAL-142 925 chr2R 20523023 20523066 chr2R 20523156 20523164 7 121 2.0 4.5 3.2 1.7 141 chr2R 20523023 intergenic not near genes chr2R 20523094 intergenic not near genes chr2R 20523164 intergenic not near genes chr2R_7_20520001 chr2R_20520001 RAL-142 926 chr2R 20541958 20542006 chr2R 20542071 20542119 12 111 4.5 4.5 4.5 2.2 161 chr2R 20541958 intergenic not near genes chr2R 20542038 intergenic not near genes chr2R 20542119 intergenic not near genes chr2R_12_20540001 chr2R_20540001 RAL-142 927 chr2R 20572552 20572585 chr2R 20572677 20572698 4 120 2.5 4.0 3.2 1.0 146 chr2R 20572552 intron qsm - chr2R 20572625 intron qsm - chr2R 20572698 intron qsm - chr2R_4_20570001 chr2R_20570001 RAL-142 928 chr2R 20668642 20668681 chr2R 20668746 20668770 13 100 4.5 12.0 8.2 1.4 128 chr2R 20668642 exon exu - chr2R 20668706 exon exu - chr2R 20668770 exon exu - chr2R_13_20665001 chr2R_20665001 RAL-142 929 chr2R 20678166 20678228 chr2R 20678331 20678393 7 160 0.0 0.5 0.2 5.8 227 chr2R 20678166 intergenic not near genes chr2R 20678280 intergenic not near genes chr2R 20678393 intergenic not near genes chr2R_7_20675001 chr2R_20675001 RAL-142 930 chr2R 20706618 20706672 chr2R 20706832 20706890 22 209 3.5 4.0 3.8 4.6 272 chr2R 20706618 intron dpr + chr2R 20706754 intron dpr + chr2R 20706890 intron dpr + chr2R_22_20705001 chr2R_20705001 RAL-142 931 chr2R 20783289 20783321 chr2R 20788083 20788125 F-element 10 4798 5.0 7.0 6.0 1.4 4836 chr2R 20783289 intergenic not near genes chr2R 20785707 intergenic not near genes chr2R 20788125 intergenic CG43666 - chr2R_10_20785001 chr2R_20785001 RAL-142 932 chr2R 20869745 20869746 chr2R 20869986 20869999 4 250 7.5 4.5 6.0 0.6 254 chr2R 20869745 intergenic IM4 - chr2R 20869872 intergenic not near genes chr2R 20869999 intergenic IM14 + chr2R_4_20865001 chr2R_20865001 RAL-142 933 chr2R 20962877 20962935 chr2R 20963004 20963067 17 129 8.0 4.0 6.0 2.4 190 chr2R 20962877 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963067 intergenic not near genes chr2R_17_20960001 chr2R_20960001 RAL-142 934 chr2R 21151097 21151145 chr2R 21153752 21153806 opus 32 2663 9.0 7.0 8.0 3.6 2709 chr2R 21151097 intron CG30389 - chr2R 21152452 intron CG30389 - chr2R 21153806 intron CG30389 - chr2R_32_21150001 chr2R_21150001 RAL-142 935 chr2R 21199971 21200036 chr2R 21200088 21200134 27 114 2.5 6.5 4.5 4.9 163 chr2R 21199971 intergenic not near genes chr2R 21200052 intergenic CG44245 +,Glycogenin + chr2R 21200134 intergenic CG44245 +,Glycogenin + chr2R_27_21200001 chr2R_21200001 RAL-142 936 chr2R 21285374 21285436 chr2R 21285282 21285548 20 104 15.5 33.0 24.2 0.8 174 chr2R 21285374 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285461 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285548 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_20_21285001 chr2R_21285001 RAL-142 937 chr2R 21381909 21381936 chr2R 21382031 21382049 6 119 3.5 0.5 2.0 2.0 140 chr2R 21381909 intergenic not near genes chr2R 21381979 intergenic not near genes chr2R 21382049 intergenic not near genes chr2R_6_21380001 chr2R_21380001 RAL-142 938 chr2R 21418501 21418567 chr2R 21418613 21418673 16 101 2.0 0.0 1.0 8.0 172 chr2R 21418501 intron Sdc - chr2R 21418587 intron Sdc - chr2R 21418673 intron Sdc - chr2R_16_21415001 chr2R_21415001 RAL-142 939 chr2R 21534454 21534469 chr2R 21534556 21534560 7 99 10.0 7.5 8.8 0.7 106 chr2R 21534454 intron Egfr + chr2R 21534507 intron Egfr + chr2R 21534560 intron Egfr + chr2R_7_21530001 chr2R_21530001 RAL-142 940 chr2R 21534470 21534492 chr2R 21534549 21534572 14 94 8.5 5.5 7.0 1.8 102 chr2R 21534470 intron Egfr + chr2R 21534521 intron Egfr + chr2R 21534572 intron Egfr + chr2R_14_21530001 chr2R_21530001 RAL-142 941 chr2R 21546013 21546020 chr2R 21546127 21546134 4 114 14.5 16.5 15.5 0.2 121 chr2R 21546013 intron Egfr + chr2R 21546074 intron Egfr + chr2R 21546134 intron Egfr + chr2R_4_21545001 chr2R_21545001 RAL-142 942 chr2R 21546021 21546043 chr2R 21546123 21546157 9 106 12.5 15.5 14.0 0.6 136 chr2R 21546021 intron Egfr + chr2R 21546089 intron Egfr + chr2R 21546157 intron Egfr + chr2R_9_21545001 chr2R_21545001 RAL-142 943 chr2R 21546044 21546061 chr2R 21546115 21546164 10 100 9.5 12.5 11.0 0.8 120 chr2R 21546044 intron Egfr + chr2R 21546104 intron Egfr + chr2R 21546164 intron Egfr + chr2R_10_21545001 chr2R_21545001 RAL-142 944 chr2R 21592848 21592857 chr2R 21592929 21592947 4 82 10.5 11.0 10.8 0.3 99 chr2R 21592848 intergenic not near genes chr2R 21592898 intergenic not near genes chr2R 21592947 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-142 945 chr2R 21610217 21610237 chr2R 21610588 21610593 5 360 11.0 2.5 6.8 0.6 376 chr2R 21610217 intron CG15673 - chr2R 21610405 intron CG15673 - chr2R 21610593 intron CG15673 - chr2R_5_21610001 chr2R_21610001 RAL-142 946 chr2R 21610239 21610268 chr2R 21610583 21610596 17 338 4.0 1.5 2.8 4.5 357 chr2R 21610239 intron CG15673 - chr2R 21610418 intron CG15673 - chr2R 21610596 intron CG15673 - chr2R_17_21610001 chr2R_21610001 RAL-142 947 chr2R 21641997 21642032 chr2R 21642079 21642123 12 85 3.0 2.5 2.8 3.2 126 chr2R 21641997 intergenic not near genes chr2R 21642060 intergenic not near genes chr2R 21642123 intergenic not near genes chr2R_12_21640001 chr2R_21640001 RAL-142 948 chr2R 21685050 21685067 chr2R 21685167 21685184 7 117 0.0 13.0 6.5 0.9 134 chr2R 21685050 intergenic CG30263 +,CG10306 + chr2R 21685117 intergenic CG30263 +,CG10306 + chr2R 21685184 intergenic CG10306 +,CG30263 + chr2R_7_21685001 chr2R_21685001 RAL-142 949 chr2R 21690426 21690472 chr2R 21690535 21690596 18 111 12.0 4.5 8.2 2.0 170 chr2R 21690426 3` UTR,exon CG42497 -,Tim10 - chr2R 21690511 intron,intron CG42497 -,Tim10 - chr2R 21690596 intron,intron CG42497 -,Tim10 - chr2R_18_21690001 chr2R_21690001 RAL-142 950 chr2R 21718854 21718866 chr2R 21718983 21718996 7 128 1.0 6.5 3.8 1.5 142 chr2R 21718854 intron Tango11 - chr2R 21718925 intron Tango11 - chr2R 21718996 intron Tango11 - chr2R_7_21715001 chr2R_21715001 RAL-142 951 chr2R 21718896 21718904 chr2R 21718961 21719007 4 95 0.0 2.0 1.0 2.0 111 chr2R 21718896 intron Tango11 - chr2R 21718952 intron Tango11 - chr2R 21719007 intron Tango11 - chr2R_4_21715001 chr2R_21715001 RAL-142 952 chr2R 21753060 21753112 chr2R 21753577 21753626 roo 10 510 2.5 1.5 2.0 3.3 566 chr2R 21753060 intergenic not near genes chr2R 21753343 intergenic not near genes chr2R 21753626 intergenic not near genes chr2R_10_21750001 chr2R_21750001 RAL-142 953 chr2R 21759560 21759590 chr2R 21759652 21759712 10 99 1.0 3.5 2.2 3.1 152 chr2R 21759560 intergenic not near genes chr2R 21759636 intergenic not near genes chr2R 21759712 intergenic not near genes chr2R_10_21755001 chr2R_21755001 RAL-142 954 chr2R 21777397 21777442 chr2R 21777512 21777560 4 115 2.5 1.5 2.0 1.3 163 chr2R 21777397 intergenic not near genes chr2R 21777478 intergenic not near genes chr2R 21777560 intergenic not near genes chr2R_4_21775001 chr2R_21775001 RAL-142 955 chr2R 21809496 21809546 chr2R 21817771 21817806 roo 13 8270 6.5 1.5 4.0 2.6 8310 chr2R 21809496 intergenic not near genes chr2R 21813651 intergenic not near genes chr2R 21817806 intergenic not near genes chr2R_13_21810001 chr2R_21810001 RAL-142 956 chr2R 21832402 21832436 chr2R 21832830 21832864 5 430 2.0 0.0 1.0 2.5 462 chr2R 21832402 intergenic CG34040 - chr2R 21832633 exon CG34040 - chr2R 21832864 exon CG34040 - chr2R_5_21830001 chr2R_21830001 RAL-142 957 chr2R 21870923 21870971 chr2R 21871036 21871051 8 101 0.0 3.5 1.8 2.9 128 chr2R 21870923 intergenic not near genes chr2R 21870987 intergenic not near genes chr2R 21871051 intergenic not near genes chr2R_8_21870001 chr2R_21870001 RAL-142 958 chr2R 21877920 21877952 chr2R 21878056 21878088 5 136 2.5 0.5 1.5 2.0 168 chr2R 21877920 intron Fili + chr2R 21878004 intron Fili + chr2R 21878088 intron Fili + chr2R_5_21875001 chr2R_21875001 RAL-142 959 chr2R 21985528 21985557 chr2R 21985623 21985673 12 107 2.0 2.0 2.0 4.0 145 chr2R 21985528 intergenic CG30401 - chr2R 21985600 intergenic CG30401 - chr2R 21985673 3` UTR CG30401 - chr2R_12_21985001 chr2R_21985001 RAL-142 960 chr2R 21992392 21992429 chr2R 21992496 21992541 9 111 1.5 5.5 3.5 2.0 149 chr2R 21992392 intron CG34370 - chr2R 21992466 intron CG34370 - chr2R 21992541 intron CG34370 - chr2R_9_21990001 chr2R_21990001 RAL-142 961 chr2R 22004267 22004308 chr2R 22004396 22004429 7 124 2.0 2.0 2.0 2.3 162 chr2R 22004267 intron CG34370 - chr2R 22004348 intron CG34370 - chr2R 22004429 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-142 962 chr2R 22040144 22040183 chr2R 22040234 22040282 16 89 6.5 2.0 4.2 3.1 138 chr2R 22040144 intergenic not near genes chr2R 22040213 intergenic not near genes chr2R 22040282 intergenic not near genes chr2R_16_22040001 chr2R_22040001 RAL-142 963 chr2R 22087658 22087672 chr2R 22087779 22087793 5 118 14.0 7.5 10.8 0.4 135 chr2R 22087658 intron CG13502 - chr2R 22087726 intron CG13502 - chr2R 22087793 intron CG13502 - chr2R_5_22085001 chr2R_22085001 RAL-142 964 chr2R 22087682 22087708 chr2R 22087770 22087821 13 106 5.5 5.5 5.5 2.0 139 chr2R 22087682 intron CG13502 - chr2R 22087752 intron CG13502 - chr2R 22087821 intron CG13502 - chr2R_13_22085001 chr2R_22085001 RAL-142 965 chr2R 22132257 22132282 chr2R 22132372 22132396 11 113 2.5 5.5 4.0 2.2 139 chr2R 22132257 intergenic not near genes chr2R 22132326 intergenic not near genes chr2R 22132396 intergenic not near genes chr2R_11_22130001 chr2R_22130001 RAL-142 966 chr2R 22178707 22178740 chr2R 22178829 22178862 8 120 4.5 2.5 3.5 1.8 155 chr2R 22178707 intron CG11170 - chr2R 22178784 intron CG11170 - chr2R 22178862 intron CG11170 - chr2R_8_22175001 chr2R_22175001 RAL-142 967 chr2R 22205833 22205876 chr2R 22205960 22205990 21 121 5.0 8.5 6.8 2.7 157 chr2R 22205833 intergenic CG3290 -,CG3292 - chr2R 22205912 intergenic CG3290 -,CG3292 - chr2R 22205990 intergenic CG3290 -,CG3292 - chr2R_21_22205001 chr2R_22205001 RAL-142 968 chr2R 22243042 22243093 chr2R 22243146 22243188 11 96 5.5 9.0 7.2 1.3 146 chr2R 22243042 intergenic not near genes chr2R 22243115 intergenic not near genes chr2R 22243188 intergenic not near genes chr2R_11_22240001 chr2R_22240001 RAL-142 969 chr2R 22349679 22349698 chr2R 22351478 22351517 jockey 6 1809 9.5 5.0 7.2 0.7 1838 chr2R 22349679 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351517 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-142 970 chr2R 22349699 22349713 chr2R 22351477 22351532 jockey 6 1801 6.5 5.0 5.8 0.9 1833 chr2R 22349699 intron Liprin-gamma - chr2R 22350616 intron Liprin-gamma - chr2R 22351532 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-142 971 chr2R 22374604 22374637 chr2R 22374725 22374742 9 117 5.5 3.0 4.2 1.7 138 chr2R 22374604 3` UTR CR44759 - chr2R 22374673 3` UTR CR44759 - chr2R 22374742 3` UTR CR44759 - chr2R_9_22370001 chr2R_22370001 RAL-142 972 chr2R 22453202 22453222 chr2R 22453340 22453360 6 135 0.0 8.0 4.0 1.2 158 chr2R 22453202 intergenic not near genes chr2R 22453281 intergenic not near genes chr2R 22453360 intergenic not near genes chr2R_6_22450001 chr2R_22450001 RAL-142 973 chr2R 22465288 22465342 chr2R 22465511 22465570 BS 11 225 1.5 5.0 3.2 2.6 282 chr2R 22465288 intron CG10384 + chr2R 22465429 intron CG10384 + chr2R 22465570 intron CG10384 + chr2R_11_22465001 chr2R_22465001 RAL-142 974 chr2R 22477906 22477945 chr2R 22478094 22478132 12 187 2.0 1.0 1.5 4.8 226 chr2R 22477906 intergenic CG4752 + chr2R 22478019 intergenic CG4752 + chr2R 22478132 intergenic CG4752 + chr2R_12_22475001 chr2R_22475001 RAL-142 975 chr2R 22499857 22499886 chr2R 22499952 22499962 10 92 1.5 13.0 7.2 1.2 105 chr2R 22499857 intron px - chr2R 22499910 intron px - chr2R 22499962 intron px - chr2R_10_22495001 chr2R_22495001 RAL-142 976 chr2R 22513847 22513856 chr2R 22513917 22513926 6 86 4.5 6.0 5.2 1.0 79 chr2R 22513847 intron px - chr2R 22513886 intron px - chr2R 22513926 intron px - chr2R_6_22510001 chr2R_22510001 RAL-142 977 chr2R 22525744 22525774 chr2R 22529314 22529337 jockey 5 3574 4.5 4.0 4.2 1.0 3593 chr2R 22525744 intron px - chr2R 22527540 intron px - chr2R 22529337 intron px - chr2R_5_22525001 chr2R_22525001 RAL-142 978 chr2R 22545589 22545642 chr2R 22545703 22545756 14 111 3.5 4.0 3.8 2.9 167 chr2R 22545589 intron px - chr2R 22545672 intron px - chr2R 22545756 intron px - chr2R_14_22545001 chr2R_22545001 RAL-142 979 chr2R 22623786 22623820 chr2R 22623909 22623950 5 125 3.0 9.5 6.2 0.7 164 chr2R 22623786 intron CG33143 + chr2R 22623868 intron CG33143 + chr2R 22623950 intron CG33143 + chr2R_5_22620001 chr2R_22620001 RAL-142 980 chr2R 22666557 22666621 chr2R 22666672 22666736 29 112 5.5 7.5 6.5 3.9 179 chr2R 22666557 3` UTR,intron CR45269 -,CR42868 + chr2R 22666646 5` UTR CR42868 + chr2R 22666736 5` UTR CR42868 + chr2R_29_22665001 chr2R_22665001 RAL-142 981 chr2R 22785702 22785745 chr2R 22785812 22785858 5 110 3.5 2.5 3.0 1.2 156 chr2R 22785702 intron CG42260 - chr2R 22785780 intron CG42260 - chr2R 22785858 intron CG42260 - chr2R_5_22785001 chr2R_22785001 RAL-142 982 chr2R 22843007 22843048 chr2R 22844998 22845039 flea 18 1994 9.0 9.5 9.2 1.8 2032 chr2R 22843007 intergenic CG9826 + chr2R 22844023 intergenic not near genes chr2R 22845039 intergenic not near genes chr2R_18_22840001 chr2R_22840001 RAL-142 983 chr2R 22941807 22941851 chr2R 22941901 22941950 16 108 2.0 6.0 4.0 3.2 143 chr2R 22941807 intergenic CG42694 + chr2R 22941878 5` UTR CG42694 + chr2R 22941950 5` UTR CG42694 + chr2R_16_22940001 chr2R_22940001 RAL-142 984 chr2R 22951802 22951853 chr2R 22951923 22951974 13 120 6.5 5.0 5.8 1.9 172 chr2R 22951802 3` UTR CR32835 - chr2R 22951888 3` UTR CR32835 - chr2R 22951974 intron CR32835 - chr2R_13_22950001 chr2R_22950001 RAL-142 985 chr2R 22957023 22957055 chr2R 22957137 22957138 12 110 6.5 8.5 7.5 1.4 115 chr2R 22957023 intergenic CR44780 - chr2R 22957080 intergenic CR44780 - chr2R 22957138 intergenic CR44780 - chr2R_12_22955001 chr2R_22955001 RAL-142 986 chr2R 23052615 23052679 chr2R 23052726 23052785 19 105 6.5 9.0 7.8 2.2 170 chr2R 23052615 intergenic not near genes chr2R 23052700 intergenic not near genes chr2R 23052785 intergenic not near genes chr2R_19_23050001 chr2R_23050001 RAL-142 987 chr2R 23061754 23061791 chr2R 23061866 23061890 17 114 6.5 9.5 8.0 1.9 136 chr2R 23061754 3` UTR l(2)06496 - chr2R 23061822 3` UTR l(2)06496 - chr2R 23061890 3` UTR l(2)06496 - chr2R_17_23060001 chr2R_23060001 RAL-142 988 chr2R 23311718 23311768 chr2R 23311855 23311860 10 137 2.5 1.5 2.0 3.3 142 chr2R 23311718 intergenic not near genes chr2R 23311789 intergenic not near genes chr2R 23311860 intergenic not near genes chr2R_10_23310001 chr2R_23310001 RAL-142 989 chr2R 23350507 23350513 chr2R 23350659 23350675 5 157 6.5 2.0 4.2 1.0 168 chr2R 23350507 intergenic not near genes chr2R 23350591 intergenic not near genes chr2R 23350675 intergenic not near genes chr2R_5_23350001 chr2R_23350001 RAL-142 990 chr2R 23350516 23350541 chr2R 23350649 23350677 8 142 3.5 1.5 2.5 2.3 161 chr2R 23350516 intergenic not near genes chr2R 23350596 intergenic not near genes chr2R 23350677 intergenic not near genes chr2R_8_23350001 chr2R_23350001 RAL-142 991 chr2R 23356245 23356266 chr2R 23356369 23356390 5 124 18.5 4.5 11.5 0.4 145 chr2R 23356245 3` UTR Rpi + chr2R 23356318 3` UTR Rpi + chr2R 23356390 3` UTR,3` UTR Rpi +,CG3500 - chr2R_5_23355001 chr2R_23355001 RAL-142 992 chr2R 23356276 23356309 chr2R 23356365 23356417 20 101 8.5 3.0 5.8 2.9 141 chr2R 23356276 3` UTR Rpi + chr2R 23356346 3` UTR Rpi + chr2R 23356417 3` UTR,3` UTR Rpi +,CG3500 - chr2R_20_23355001 chr2R_23355001 RAL-142 993 chr2R 23423719 23423771 chr2R 23423897 23423950 13 180 5.5 8.0 6.8 1.7 231 chr2R 23423719 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423950 intron CG9815 - chr2R_13_23420001 chr2R_23420001 RAL-142 994 chr2R 23437208 23437243 chr2R 23437311 23437321 7 88 4.0 9.5 6.8 0.9 113 chr2R 23437208 intergenic not near genes chr2R 23437264 intergenic not near genes chr2R 23437321 intergenic not near genes chr2R_7_23435001 chr2R_23435001 RAL-142 995 chr2R 23467567 23467583 chr2R 23467701 23467730 6 150 5.0 4.0 4.5 1.1 163 chr2R 23467567 intron CG43795 + chr2R 23467648 intron CG43795 + chr2R 23467730 intron CG43795 + chr2R_6_23465001 chr2R_23465001 RAL-142 996 chr2R 23508884 23508939 chr2R 23509036 23509091 9 152 5.0 3.5 4.2 1.7 207 chr2R 23508884 intergenic not near genes chr2R 23508988 intergenic not near genes chr2R 23509091 intergenic not near genes chr2R_9_23505001 chr2R_23505001 RAL-142 997 chr2R 23518180 23518220 chr2R 23518275 23518283 4 98 3.5 0.0 1.8 1.4 103 chr2R 23518180 intergenic not near genes chr2R 23518232 intergenic not near genes chr2R 23518283 intergenic not near genes chr2R_4_23515001 chr2R_23515001 RAL-142 998 chr2R 23529571 23529598 chr2R 23537157 23537196 412 6 7592 10.0 12.5 11.2 0.5 7625 chr2R 23529571 intron bw - chr2R 23533384 intron bw - chr2R 23537196 exon bw - chr2R_6_23530001 chr2R_23530001 RAL-142 999 chr2R 23553707 23553749 chr2R 23553830 23553848 21 121 7.5 11.5 9.5 2.0 141 chr2R 23553707 intron pita - chr2R 23553778 intron pita - chr2R 23553848 intron pita - chr2R_21_23550001 chr2R_23550001 RAL-142 1000 chr2R 23563857 23563919 chr2R 23563972 23564031 28 104 7.5 11.5 9.5 2.7 174 chr2R 23563857 3` UTR Pi3K59F + chr2R 23563944 3` UTR Pi3K59F + chr2R 23564031 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_28_23560001 chr2R_23560001 RAL-142 1001 chr2R 23607005 23607191 chr2R 23607116 23607319 31 115 2.0 1.0 1.5 12.4 314 chr2R 23607005 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607319 intron CG17664 - chr2R_31_23605001 chr2R_23605001 RAL-142 1002 chr2R 23635700 23635729 chr2R 23635774 23635782 5 78 2.0 0.0 1.0 2.5 82 chr2R 23635700 intron retn + chr2R 23635741 intron retn + chr2R 23635782 intron retn + chr2R_5_23635001 chr2R_23635001 RAL-142 1003 chr2R 23726207 23726256 chr2R 23726318 23726330 11 103 3.5 4.5 4.0 2.2 123 chr2R 23726207 intron Sesn + chr2R 23726268 intron Sesn + chr2R 23726330 intron Sesn + chr2R_11_23725001 chr2R_23725001 RAL-142 1004 chr2R 23784470 23784507 chr2R 23784557 23784607 15 100 4.5 3.5 4.0 3.0 137 chr2R 23784470 intron CG9850 - chr2R 23784538 intron CG9850 - chr2R 23784607 intron CG9850 - chr2R_15_23780001 chr2R_23780001 RAL-142 1005 chr2R 23819115 23819134 chr2R 23819240 23819264 6 126 6.5 4.0 5.2 1.0 149 chr2R 23819115 intergenic not near genes chr2R 23819190 intergenic not near genes chr2R 23819264 intergenic not near genes chr2R_6_23815001 chr2R_23815001 RAL-142 1006 chr2R 23914322 23914332 chr2R 23921934 23921989 412 5 7634 6.0 5.5 5.8 0.7 7667 chr2R 23914322 exon kcc + chr2R 23918156 intron kcc + chr2R 23921989 exon kcc + chr2R_5_23915001 chr2R_23915001 RAL-142 1007 chr2R 23994119 23994158 chr2R 23994228 23994244 9 103 8.5 2.5 5.5 1.4 125 chr2R 23994119 intron CG3860 - chr2R 23994182 intron CG3860 - chr2R 23994244 intron CG3860 - chr2R_9_23990001 chr2R_23990001 RAL-142 1008 chr2R 24008376 24008434 chr2R 24008497 24008539 39 116 10.5 11.0 10.8 3.3 163 chr2R 24008376 intron Unc-89 - chr2R 24008458 intron Unc-89 - chr2R 24008539 intron Unc-89 - chr2R_39_24005001 chr2R_24005001 RAL-142 1009 chr2R 24077903 24077949 chr2R 24078008 24078034 18 97 8.0 3.0 5.5 2.8 131 chr2R 24077903 3` UTR Mlp60A + chr2R 24077968 3` UTR Mlp60A + chr2R 24078034 3` UTR Mlp60A + chr2R_18_24075001 chr2R_24075001 RAL-142 1010 chr2R 24138275 24138303 chr2R 24138469 24138497 8 192 17.5 12.0 14.8 0.5 222 chr2R 24138275 intergenic CG4065 -,CR44826 + chr2R 24138386 intergenic CR44826 +,CG4065 - chr2R 24138497 intergenic CR44826 +,CG4065 - chr2R_8_24135001 chr2R_24135001 RAL-142 1011 chr2R 24138312 24138331 chr2R 24138466 24138525 8 174 9.5 11.5 10.5 0.7 213 chr2R 24138312 intergenic CG4065 -,CR44826 + chr2R 24138418 intergenic CR44826 +,CG4065 - chr2R 24138525 intergenic CR44826 +,CG4065 - chr2R_8_24135001 chr2R_24135001 RAL-142 1012 chr2R 24147066 24147076 chr2R 24154650 24154665 412 6 7592 9.5 5.0 7.2 0.7 7599 chr2R 24147066 intron Dat + chr2R 24150866 intron Dat + chr2R 24154665 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-142 1013 chr2R 24147078 24147095 chr2R 24154647 24154662 412 7 7586 6.5 5.0 5.8 1.0 7584 chr2R 24147078 intron Dat + chr2R 24150870 intron Dat + chr2R 24154662 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-142 1014 chr2R 24177206 24177266 chr2R 24184725 24184784 412 16 7516 7.5 0.5 4.0 3.2 7578 chr2R 24177206 3` UTR Nop60B + chr2R 24180995 intron Nop60B + chr2R 24184784 3` UTR Nop60B + chr2R_16_24180001 chr2R_24180001 RAL-142 1015 chr2R 24228372 24228383 chr2R 24228476 24228499 5 108 11.0 3.0 7.0 0.6 127 chr2R 24228372 intron CG30419 - chr2R 24228436 intron CG30419 - chr2R 24228499 intron CG30419 - chr2R_5_24225001 chr2R_24225001 RAL-142 1016 chr2R 24228393 24228422 chr2R 24228475 24228515 5 77 4.5 2.0 3.2 1.2 122 chr2R 24228393 intron CG30419 - chr2R 24228454 intron CG30419 - chr2R 24228515 intron CG30419 - chr2R_5_24225001 chr2R_24225001 RAL-142 1017 chr2R 24274793 24274808 chr2R 24274904 24274920 4 112 7.5 7.5 7.5 0.5 127 chr2R 24274793 intergenic not near genes chr2R 24274856 intergenic not near genes chr2R 24274920 intergenic not near genes chr2R_4_24270001 chr2R_24270001 RAL-142 1018 chr2R 24278314 24278353 chr2R 24278412 24278466 14 109 1.5 4.0 2.8 3.7 152 chr2R 24278314 intron nvy + chr2R 24278390 intron nvy + chr2R 24278466 intron nvy + chr2R_14_24275001 chr2R_24275001 RAL-142 1019 chr2R 24351382 24351393 chr2R 24351497 24351509 4 116 7.5 3.5 5.5 0.6 127 chr2R 24351382 intron,5` UTR bs +,CG44812 - chr2R 24351446 intron bs + chr2R 24351509 intron,3` UTR bs +,CR44811 - chr2R_4_24350001 chr2R_24350001 RAL-142 1020 chr2R 24351394 24351438 chr2R 24351492 24351554 20 105 3.0 2.0 2.5 5.7 160 chr2R 24351394 intron bs + chr2R 24351474 intron bs + chr2R 24351554 intron,3` UTR bs +,CR44811 - chr2R_20_24350001 chr2R_24350001 RAL-142 1021 chr2R 24353416 24353455 chr2R 24361791 24361823 roo 15 8380 4.5 1.5 3.0 3.8 8407 chr2R 24353416 intron,intron bs +,CR44811 - chr2R 24357620 intron,intron bs +,CR44811 - chr2R 24361823 intron,intron bs +,CR44811 - chr2R_15_24355001 chr2R_24355001 RAL-142 1022 chr2R 24493056 24493119 chr2R 24493180 24493240 11 120 0.0 4.5 2.2 3.4 184 chr2R 24493056 intergenic CG13590 -,CG13589 - chr2R 24493148 intergenic CG13590 -,CG13589 - chr2R 24493240 intergenic CG13590 -,CG13589 - chr2R_11_24490001 chr2R_24490001 RAL-142 1023 chr2R 24590097 24590145 chr2R 24590203 24590257 17 103 3.0 4.5 3.8 3.5 160 chr2R 24590097 intron pio + chr2R 24590177 intron pio + chr2R 24590257 intron pio + chr2R_17_24590001 chr2R_24590001 RAL-142 1024 chr2R 24591497 24591544 chr2R 24591597 24591649 21 105 2.0 5.0 3.5 4.7 152 chr2R 24591497 intron pio + chr2R 24591573 intron pio + chr2R 24591649 intron pio + chr2R_21_24590001 chr2R_24590001 RAL-142 1025 chr2R 24647552 24647561 chr2R 24655158 24655167 412 4 7606 5.0 6.5 5.8 0.6 7615 chr2R 24647552 intergenic not near genes chr2R 24651360 intergenic not near genes chr2R 24655167 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-142 1026 chr2R 24647564 24647615 chr2R 24655146 24655207 412 4 7568 0.0 5.5 2.8 1.1 7643 chr2R 24647564 intergenic not near genes chr2R 24651386 intergenic not near genes chr2R 24655207 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-142 1027 chr2R 24727871 24727917 chr2R 24735396 24735434 mdg1 13 7514 3.5 9.5 6.5 1.7 7563 chr2R 24727871 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735434 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-142 1028 chr2R 24763612 24763644 chr2R 24765587 24765655 G2 15 1985 8.0 7.5 7.8 1.7 2043 chr2R 24763612 exon CG3894 + chr2R 24764634 intron CG3894 + chr2R 24765655 exon CG3894 + chr2R_15_24760001 chr2R_24760001 RAL-142 1029 chr2R 24850575 24850614 chr2R 24850763 24850803 8 187 7.0 9.5 8.2 0.9 228 chr2R 24850575 intergenic CG3650 + chr2R 24850689 intergenic CG3650 + chr2R 24850803 intergenic not near genes chr2R_8_24850001 chr2R_24850001 RAL-142 1030 chr2R 24859836 24859864 chr2R 24859925 24859985 6 97 2.5 1.5 2.0 2.0 149 chr2R 24859836 5` UTR CR44829 + chr2R 24859910 5` UTR CR44829 + chr2R 24859985 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-142 1031 chr2R 24884024 24884079 chr2R 24884133 24884191 34 113 7.0 9.0 8.0 3.8 167 chr2R 24884024 intron NKAIN + chr2R 24884108 intron NKAIN + chr2R 24884191 intron NKAIN + chr2R_34_24880001 chr2R_24880001 RAL-142 1032 chr2R 25004878 25004899 chr2R 25004979 25005012 7 110 3.0 4.5 3.8 1.5 134 chr2R 25004878 intron zip - chr2R 25004945 intron zip - chr2R 25005012 intron zip - chr2R_7_25000001 chr2R_25000001 RAL-142 1033 chr2R 25004902 25004916 chr2R 25004971 25005021 12 93 1.5 3.5 2.5 3.4 119 chr2R 25004902 intron zip - chr2R 25004962 intron zip - chr2R 25005021 intron zip - chr2R_12_25000001 chr2R_25000001 RAL-142 1034 chr2R 25014519 25014575 chr2R 25014619 25014669 19 99 5.5 3.5 4.5 3.5 150 chr2R 25014519 intron uzip + chr2R 25014594 intron uzip + chr2R 25014669 intron uzip + chr2R_19_25010001 chr2R_25010001 RAL-142 1035 chr2R 25018356 25018364 chr2R 25018467 25018473 4 120 4.0 10.0 7.0 0.5 117 chr2R 25018356 intron uzip + chr2R 25018414 intron uzip + chr2R 25018473 intron uzip + chr2R_4_25015001 chr2R_25015001 RAL-142 1036 chr2R 25022609 25022673 chr2R 25022728 25022792 28 115 8.0 0.0 4.0 5.6 183 chr2R 25022609 intron uzip + chr2R 25022700 intron uzip + chr2R 25022792 intron uzip + chr2R_28_25020001 chr2R_25020001 RAL-142 1037 chr2R 25101256 25101309 chr2R 25101378 25101417 25 124 9.5 7.5 8.5 2.6 161 chr2R 25101256 intron lov - chr2R 25101336 intron lov - chr2R 25101417 intron lov - chr2R_25_25100001 chr2R_25100001 RAL-142 1038 chr2R 25122933 25122991 chr2R 25123046 25123091 16 107 4.0 2.5 3.2 3.8 158 chr2R 25122933 intron lov - chr2R 25123012 intron lov - chr2R 25123091 intron lov - chr2R_16_25120001 chr2R_25120001 RAL-142 1039 chr3L 86426 86465 chr3L 86540 86560 6 104 3.5 2.0 2.8 1.6 134 chr3L 86426 intergenic not near genes chr3L 86493 intergenic not near genes chr3L 86560 intergenic not near genes chr3L_6_85001 chr3L_85001 RAL-142 1040 chr3L 87059 87081 chr3L 87369 87397 5 312 1.5 2.0 1.8 1.8 338 chr3L 87059 intergenic not near genes chr3L 87228 intergenic not near genes chr3L 87397 intergenic not near genes chr3L_5_85001 chr3L_85001 RAL-142 1041 chr3L 105709 105744 chr3L 105839 105866 5 128 4.5 2.5 3.5 1.1 157 chr3L 105709 intergenic not near genes chr3L 105788 intergenic not near genes chr3L 105866 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-142 1042 chr3L 108916 108979 chr3L 109030 109070 9 102 2.0 3.0 2.5 2.6 154 chr3L 108916 intergenic not near genes chr3L 108993 intergenic not near genes chr3L 109070 intergenic not near genes chr3L_9_105001 chr3L_105001 RAL-142 1043 chr3L 110184 110238 chr3L 119383 119409 roo 7 9192 2.0 4.5 3.2 1.7 9225 chr3L 110184 intergenic not near genes chr3L 114796 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_7_110001 chr3L_110001 RAL-142 1044 chr3L 315639 315684 chr3L 315750 315801 20 106 10.0 7.5 8.8 2.0 162 chr3L 315639 intron fwd - chr3L 315720 intron fwd - chr3L 315801 intron fwd - chr3L_20_315001 chr3L_315001 RAL-142 1045 chr3L 320608 320673 chr3L 320817 320881 23 204 3.5 6.0 4.8 4.0 273 chr3L 320608 intergenic not near genes chr3L 320744 intergenic CG32344 - chr3L 320881 intergenic CG32344 - chr3L_23_320001 chr3L_320001 RAL-142 1046 chr3L 365496 365552 chr3L 365617 365673 18 116 5.0 9.5 7.2 2.2 177 chr3L 365496 3` UTR CG1233 + chr3L 365584 3` UTR CG1233 + chr3L 365673 3` UTR,3` UTR CG1233 +,CG13884 - chr3L_18_365001 chr3L_365001 RAL-142 1047 chr3L 402665 402716 chr3L 409741 409770 297 13 7075 4.5 10.0 7.2 1.6 7105 chr3L 402665 intergenic not near genes chr3L 406218 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_13_405001 chr3L_405001 RAL-142 1048 chr3L 445559 445579 chr3L 445625 445689 7 101 3.0 2.0 2.5 2.0 130 chr3L 445559 exon klar - chr3L 445624 intron klar - chr3L 445689 intron klar - chr3L_7_445001 chr3L_445001 RAL-142 1049 chr3L 550763 550776 chr3L 551038 551067 5 286 2.5 1.5 2.0 1.7 304 chr3L 550763 intron hipk + chr3L 550915 intron hipk + chr3L 551067 intron hipk + chr3L_5_550001 chr3L_550001 RAL-142 1050 chr3L 563113 563127 chr3L 563236 563249 6 122 3.0 2.5 2.8 1.6 136 chr3L 563113 intron hipk + chr3L 563181 intron hipk + chr3L 563249 intron hipk + chr3L_6_560001 chr3L_560001 RAL-142 1051 chr3L 563944 564001 chr3L 564151 564191 15 204 2.5 2.5 2.5 4.3 247 chr3L 563944 intron hipk + chr3L 564068 intron hipk + chr3L 564191 intron hipk + chr3L_15_560001 chr3L_560001 RAL-142 1052 chr3L 592930 592969 chr3L 593041 593080 8 109 3.0 6.5 4.8 1.4 150 chr3L 592930 intergenic MED14 + chr3L 593005 intergenic MED14 + chr3L 593080 intergenic MED14 + chr3L_8_590001 chr3L_590001 RAL-142 1053 chr3L 642440 642500 chr3L 642566 642624 17 123 3.5 8.5 6.0 2.4 184 chr3L 642440 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642624 5` UTR CR43334 + chr3L_17_640001 chr3L_640001 RAL-142 1054 chr3L 651358 651415 chr3L 651481 651538 29 119 8.0 7.0 7.5 3.4 180 chr3L 651358 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651538 intergenic CG3402 -,Gale + chr3L_29_650001 chr3L_650001 RAL-142 1055 chr3L 705871 705916 chr3L 706002 706047 11 129 8.0 6.0 7.0 1.4 176 chr3L 705871 intergenic CG13895 -,CR44514 + chr3L 705959 3` UTR CG13895 - chr3L 706047 3` UTR CG13895 - chr3L_11_705001 chr3L_705001 RAL-142 1056 chr3L 732795 732835 chr3L 733052 733092 7 252 3.5 4.0 3.8 1.5 297 chr3L 732795 intergenic not near genes chr3L 732944 intergenic not near genes chr3L 733092 intergenic not near genes chr3L_7_730001 chr3L_730001 RAL-142 1057 chr3L 732838 732845 chr3L 733049 733092 7 241 3.5 4.0 3.8 1.5 254 chr3L 732838 intergenic not near genes chr3L 732965 intergenic not near genes chr3L 733092 intergenic not near genes chr3L_7_730001 chr3L_730001 RAL-142 1058 chr3L 759173 759176 chr3L 759368 759378 4 212 0.0 5.5 2.8 1.1 205 chr3L 759173 intergenic not near genes chr3L 759276 intergenic not near genes chr3L 759378 intergenic not near genes chr3L_4_755001 chr3L_755001 RAL-142 1059 chr3L 784817 784861 chr3L 784917 784927 9 95 3.5 4.5 4.0 1.8 110 chr3L 784817 intergenic not near genes chr3L 784872 intergenic not near genes chr3L 784927 intergenic not near genes chr3L_9_780001 chr3L_780001 RAL-142 1060 chr3L 789884 789923 chr3L 790404 790443 roo 6 520 3.5 2.5 3.0 1.5 559 chr3L 789884 intergenic not near genes chr3L 790164 intergenic not near genes chr3L 790443 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-142 1061 chr3L 852555 852563 chr3L 852672 852679 5 127 7.5 4.0 5.8 0.7 124 chr3L 852555 3` UTR CG13890 + chr3L 852617 3` UTR CG13890 + chr3L 852679 intergenic CG13890 +,dpr20 - chr3L_5_850001 chr3L_850001 RAL-142 1062 chr3L 857984 858031 chr3L 866480 866496 Tirant 8 8488 2.0 0.5 1.2 3.6 8512 chr3L 857984 intergenic not near genes chr3L 862240 intergenic not near genes chr3L 866496 intergenic CG12502 + chr3L_8_860001 chr3L_860001 RAL-142 1063 chr3L 905046 905090 chr3L 905165 905209 6 119 0.0 2.0 1.0 3.0 163 chr3L 905046 intergenic not near genes chr3L 905128 intergenic not near genes chr3L 905209 intergenic not near genes chr3L_6_905001 chr3L_905001 RAL-142 1064 chr3L 925156 925202 chr3L 932617 932653 mdg1 15 7457 3.0 4.0 3.5 3.3 7497 chr3L 925156 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932653 intron Glut1 + chr3L_15_925001 chr3L_925001 RAL-142 1065 chr3L 933841 933889 chr3L 934009 934038 10 165 5.0 6.0 5.5 1.5 197 chr3L 933841 intron Glut1 + chr3L 933940 intron Glut1 + chr3L 934038 intron Glut1 + chr3L_10_930001 chr3L_930001 RAL-142 1066 chr3L 939750 939759 chr3L 940906 940915 jockey 4 1156 7.0 10.0 8.5 0.4 1165 chr3L 939750 intron Glut1 + chr3L 940332 intron Glut1 + chr3L 940915 intron Glut1 + chr3L_4_940001 chr3L_940001 RAL-142 1067 chr3L 939767 939794 chr3L 940903 940944 jockey 13 1145 3.5 9.5 6.5 1.7 1177 chr3L 939767 intron Glut1 + chr3L 940356 intron Glut1 + chr3L 940944 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-142 1068 chr3L 955057 955103 chr3L 955559 955623 16 498 2.0 1.0 1.5 6.4 566 chr3L 955057 intron Glut1 + chr3L 955340 intron Glut1 + chr3L 955623 intron Glut1 + chr3L_16_955001 chr3L_955001 RAL-142 1069 chr3L 1003034 1003081 chr3L 1003129 1003193 13 100 5.5 8.5 7.0 1.6 159 chr3L 1003034 intron trio - chr3L 1003114 intron trio - chr3L 1003193 intron trio - chr3L_13_1000001 chr3L_1000001 RAL-142 1070 chr3L 1008475 1008533 chr3L 1008586 1008634 15 107 4.5 7.0 5.8 2.2 159 chr3L 1008475 intron trio - chr3L 1008554 intron trio - chr3L 1008634 intron trio - chr3L_15_1005001 chr3L_1005001 RAL-142 1071 chr3L 1009062 1009085 chr3L 1009191 1009214 7 126 0.0 15.0 7.5 0.8 152 chr3L 1009062 intron trio - chr3L 1009138 intron trio - chr3L 1009214 intron trio - chr3L_7_1005001 chr3L_1005001 RAL-142 1072 chr3L 1021584 1021610 chr3L 1021677 1021701 6 97 4.5 10.0 7.2 0.7 117 chr3L 1021584 intron trio - chr3L 1021642 intron trio - chr3L 1021701 intron trio - chr3L_6_1020001 chr3L_1020001 RAL-142 1073 chr3L 1021620 1021629 chr3L 1021676 1021722 6 82 4.0 10.0 7.0 0.8 102 chr3L 1021620 intron trio - chr3L 1021671 intron trio - chr3L 1021722 intron trio - chr3L_6_1020001 chr3L_1020001 RAL-142 1074 chr3L 1033327 1033343 chr3L 1033458 1033472 5 130 0.0 0.0 0.0 5.0 145 chr3L 1033327 intron trio - chr3L 1033400 intron trio - chr3L 1033472 intron trio - chr3L_5_1030001 chr3L_1030001 RAL-142 1075 chr3L 1042932 1042985 chr3L 1043045 1043097 17 112 3.5 3.0 3.2 4.0 165 chr3L 1042932 intron bab1 - chr3L 1043014 intron bab1 - chr3L 1043097 intron bab1 - chr3L_17_1040001 chr3L_1040001 RAL-142 1076 chr3L 1154101 1154139 chr3L 1163285 1163309 roo 10 9179 5.0 3.0 4.0 2.0 9208 chr3L 1154101 intron bab2 - chr3L 1158705 intron bab2 - chr3L 1163309 intron bab2 - chr3L_10_1155001 chr3L_1155001 RAL-142 1077 chr3L 1219606 1219621 chr3L 1227327 1227365 412 7 7748 2.0 6.5 4.2 1.3 7759 chr3L 1219606 intron mwh + chr3L 1223486 intron mwh + chr3L 1227365 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-142 1078 chr3L 1236202 1236235 chr3L 1236314 1236339 7 102 5.0 0.5 2.8 1.8 137 chr3L 1236202 intron CG9194 + chr3L 1236270 intron CG9194 + chr3L 1236339 intron CG9194 + chr3L_7_1235001 chr3L_1235001 RAL-142 1079 chr3L 1364002 1364064 chr3L 1364121 1364177 9 118 0.0 6.0 3.0 2.2 175 chr3L 1364002 intron Ptp61F - chr3L 1364090 intron Ptp61F - chr3L 1364177 intron Ptp61F - chr3L_9_1360001 chr3L_1360001 RAL-142 1080 chr3L 1374422 1374454 chr3L 1374513 1374522 6 87 11.5 9.0 10.2 0.5 100 chr3L 1374422 intron,intron Ptp61F -,ru + chr3L 1374472 intron,intron Ptp61F -,ru + chr3L 1374522 intron,intron Ptp61F -,ru + chr3L_6_1370001 chr3L_1370001 RAL-142 1081 chr3L 1396712 1396757 chr3L 1396831 1396858 7 104 12.5 13.5 13.0 0.5 146 chr3L 1396712 intron Ptp61F - chr3L 1396785 intron Ptp61F - chr3L 1396858 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-142 1082 chr3L 1415783 1415802 chr3L 1415875 1415884 6 93 7.0 7.0 7.0 0.8 101 chr3L 1415783 intron Ptp61F - chr3L 1415834 intron Ptp61F - chr3L 1415884 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-142 1083 chr3L 1485729 1485743 chr3L 1486909 1486919 1360 7 1189 10.0 10.0 10.0 0.6 1190 chr3L 1485729 intron stet - chr3L 1486324 intron stet - chr3L 1486919 intron stet - chr3L_7_1485001 chr3L_1485001 RAL-142 1084 chr3L 1505976 1506031 chr3L 1513607 1513658 17.6 28 7627 4.5 9.0 6.8 3.6 7682 chr3L 1505976 intron,intron Psa +,cue - chr3L 1509817 intron,intron Psa +,cue - chr3L 1513658 intron,intron Psa +,cue - chr3L_28_1505001 chr3L_1505001 RAL-142 1085 chr3L 1540609 1540623 chr3L 1540730 1540735 7 119 14.5 5.5 10.0 0.6 126 chr3L 1540609 exon CG7852 + chr3L 1540672 intron CG7852 + chr3L 1540735 intron CG7852 + chr3L_7_1540001 chr3L_1540001 RAL-142 1086 chr3L 1540624 1540669 chr3L 1540726 1540766 15 107 5.5 5.0 5.2 2.4 142 chr3L 1540624 exon CG7852 + chr3L 1540695 intron CG7852 + chr3L 1540766 exon CG7852 + chr3L_15_1540001 chr3L_1540001 RAL-142 1087 chr3L 1571446 1571495 chr3L 1571566 1571599 14 116 4.0 5.0 4.5 2.5 153 chr3L 1571446 intron CG12004 + chr3L 1571522 intron CG12004 + chr3L 1571599 intron CG12004 + chr3L_14_1570001 chr3L_1570001 RAL-142 1088 chr3L 1585905 1585914 chr3L 1586021 1586030 5 115 4.5 4.5 4.5 0.9 125 chr3L 1585905 intron CG13917 + chr3L 1585968 intron CG13917 + chr3L 1586030 intron CG13917 + chr3L_5_1585001 chr3L_1585001 RAL-142 1089 chr3L 1612419 1612433 chr3L 1612514 1612531 6 96 6.5 6.5 6.5 0.8 112 chr3L 1612419 intron,intron,exon CG18170 +,CG33791 +,CG12105 - chr3L 1612475 intron,intron,exon CG18170 +,CG33791 +,CG12105 - chr3L 1612531 intron,intron,exon CG18170 +,CG33791 +,CG12105 - chr3L_6_1610001 chr3L_1610001 RAL-142 1090 chr3L 1678881 1678904 chr3L 1678961 1678997 9 94 4.5 4.0 4.2 1.7 116 chr3L 1678881 intron CG7991 + chr3L 1678939 intron CG7991 + chr3L 1678997 intron CG7991 + chr3L_9_1675001 chr3L_1675001 RAL-142 1091 chr3L 1740835 1740884 chr3L 1741104 1741131 pogo 10 265 5.0 6.0 5.5 1.5 296 chr3L 1740835 intron Gk + chr3L 1740983 intron Gk + chr3L 1741131 intron Gk + chr3L_10_1740001 chr3L_1740001 RAL-142 1092 chr3L 1805675 1805695 chr3L 1805872 1805887 7 202 5.0 6.0 5.5 1.1 212 chr3L 1805675 exon CG42676 + chr3L 1805781 intron CG42676 + chr3L 1805887 intron CG42676 + chr3L_7_1805001 chr3L_1805001 RAL-142 1093 chr3L 1809972 1810000 chr3L 1810198 1810226 8 226 8.5 6.5 7.5 0.9 254 chr3L 1809972 intergenic not near genes chr3L 1810099 intergenic GV1 + chr3L 1810226 intergenic GV1 + chr3L_8_1810001 chr3L_1810001 RAL-142 1094 chr3L 1853039 1853053 chr3L 1853151 1853165 6 110 4.0 7.0 5.5 0.9 126 chr3L 1853039 intron CG13936 - chr3L 1853102 intron CG13936 - chr3L 1853165 intron CG13936 - chr3L_6_1850001 chr3L_1850001 RAL-142 1095 chr3L 1879092 1879136 chr3L 1879205 1879249 14 111 2.5 0.0 1.2 6.4 157 chr3L 1879092 intron CG13937 - chr3L 1879170 intron CG13937 - chr3L 1879249 intron CG13937 - chr3L_14_1875001 chr3L_1875001 RAL-142 1096 chr3L 1882341 1882379 chr3L 1882461 1882487 8 123 5.5 2.0 3.8 1.7 146 chr3L 1882341 intron CG13937 - chr3L 1882414 intron CG13937 - chr3L 1882487 intron CG13937 - chr3L_8_1880001 chr3L_1880001 RAL-142 1097 chr3L 1885129 1885185 chr3L 1885240 1885290 8 106 0.0 3.0 1.5 3.2 161 chr3L 1885129 intergenic Aprt - chr3L 1885210 intergenic Aprt -,Tmhs + chr3L 1885290 intergenic Aprt -,Tmhs + chr3L_8_1885001 chr3L_1885001 RAL-142 1098 chr3L 1898507 1898514 chr3L 1898622 1898622 4 118 5.5 2.5 4.0 0.8 115 chr3L 1898507 intron CG1887 - chr3L 1898564 intron CG1887 - chr3L 1898622 intron CG1887 - chr3L_4_1895001 chr3L_1895001 RAL-142 1099 chr3L 1898515 1898553 chr3L 1898619 1898681 11 113 4.0 2.5 3.2 2.6 166 chr3L 1898515 intron CG1887 - chr3L 1898598 intron CG1887 - chr3L 1898681 intron CG1887 - chr3L_11_1895001 chr3L_1895001 RAL-142 1100 chr3L 1922437 1922459 chr3L 1922540 1922567 4 99 9.0 13.0 11.0 0.3 130 chr3L 1922437 intron Dbx + chr3L 1922502 intron Dbx + chr3L 1922567 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-142 1101 chr3L 1977695 1977732 chr3L 1978229 1978266 9 532 7.0 4.5 5.8 1.3 571 chr3L 1977695 intergenic not near genes chr3L 1977980 intergenic not near genes chr3L 1978266 intergenic not near genes chr3L_9_1975001 chr3L_1975001 RAL-142 1102 chr3L 2039338 2039399 chr3L 2039463 2039525 7 124 2.0 0.5 1.2 3.2 187 chr3L 2039338 intergenic sls - chr3L 2039432 intergenic sls - chr3L 2039525 intergenic sls - chr3L_7_2035001 chr3L_2035001 RAL-142 1103 chr3L 2113778 2113794 chr3L 2113890 2113906 7 112 0.5 13.0 6.8 0.9 128 chr3L 2113778 intron sls - chr3L 2113842 intron sls - chr3L 2113906 intron sls - chr3L_7_2110001 chr3L_2110001 RAL-142 1104 chr3L 2139177 2139190 chr3L 2139293 2139306 4 114 12.5 4.0 8.2 0.4 129 chr3L 2139177 intron zormin - chr3L 2139242 intron zormin - chr3L 2139306 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-142 1105 chr3L 2139191 2139234 chr3L 2139292 2139350 19 107 6.0 4.0 5.0 3.2 159 chr3L 2139191 intron zormin - chr3L 2139270 intron zormin - chr3L 2139350 intron zormin - chr3L_19_2135001 chr3L_2135001 RAL-142 1106 chr3L 2168762 2168793 chr3L 2168878 2168918 4 118 3.0 3.5 3.2 1.0 156 chr3L 2168762 exon CG15879 - chr3L 2168840 intron CG15879 - chr3L 2168918 intron CG15879 - chr3L_4_2165001 chr3L_2165001 RAL-142 1107 chr3L 2199783 2199816 chr3L 2199885 2199912 12 104 3.0 7.0 5.0 2.0 129 chr3L 2199783 intergenic not near genes chr3L 2199848 intergenic not near genes chr3L 2199912 intergenic not near genes chr3L_12_2195001 chr3L_2195001 RAL-142 1108 chr3L 2218477 2218507 chr3L 2218552 2218589 9 81 4.5 4.5 4.5 1.6 112 chr3L 2218477 intergenic not near genes chr3L 2218533 intergenic not near genes chr3L 2218589 intergenic not near genes chr3L_9_2215001 chr3L_2215001 RAL-142 1109 chr3L 2282960 2283024 chr3L 2283070 2283135 14 109 10.0 6.5 8.2 1.5 175 chr3L 2282960 5` UTR MsR2 + chr3L 2283048 5` UTR MsR2 + chr3L 2283135 5` UTR MsR2 + chr3L_14_2280001 chr3L_2280001 RAL-142 1110 chr3L 2331567 2331606 chr3L 2331666 2331718 13 105 2.0 4.0 3.0 3.2 151 chr3L 2331567 intron MsR1 + chr3L 2331642 intron MsR1 + chr3L 2331718 intron MsR1 + chr3L_13_2330001 chr3L_2330001 RAL-142 1111 chr3L 2447470 2447535 chr3L 2456661 2456671 roo 13 9170 5.5 3.0 4.2 2.5 9201 chr3L 2447470 intron CG45186 + chr3L 2452070 intron CG45186 + chr3L 2456671 intron CG45186 + chr3L_13_2450001 chr3L_2450001 RAL-142 1112 chr3L 2480269 2480320 chr3L 2480404 2480422 7 113 5.0 1.0 3.0 1.8 153 chr3L 2480269 intron CG45186 + chr3L 2480346 intron CG45186 + chr3L 2480422 intron CG45186 + chr3L_7_2480001 chr3L_2480001 RAL-142 1113 chr3L 2493812 2493846 chr3L 2493909 2493968 9 119 2.0 1.5 1.8 3.2 156 chr3L 2493812 intron CG45186 + chr3L 2493890 intron CG45186 + chr3L 2493968 intron CG45186 + chr3L_9_2490001 chr3L_2490001 RAL-142 1114 chr3L 2533643 2533681 chr3L 2533738 2533761 10 93 4.5 16.5 10.5 0.9 118 chr3L 2533643 intron Spn - chr3L 2533702 intron Spn - chr3L 2533761 intron Spn - chr3L_10_2530001 chr3L_2530001 RAL-142 1115 chr3L 2534584 2534645 chr3L 2534697 2534717 14 104 0.0 6.0 3.0 3.5 133 chr3L 2534584 intron Spn - chr3L 2534650 intron Spn - chr3L 2534717 exon Spn - chr3L_14_2530001 chr3L_2530001 RAL-142 1116 chr3L 2561502 2561561 chr3L 2561607 2561673 21 105 9.0 7.0 8.0 2.3 171 chr3L 2561502 intron msn - chr3L 2561588 intron msn - chr3L 2561673 intron msn - chr3L_21_2560001 chr3L_2560001 RAL-142 1117 chr3L 2581879 2581917 chr3L 2582009 2582051 6 129 2.5 2.5 2.5 1.7 172 chr3L 2581879 intron msn - chr3L 2581965 intron msn - chr3L 2582051 intron msn - chr3L_6_2580001 chr3L_2580001 RAL-142 1118 chr3L 2617240 2617257 chr3L 2617350 2617358 5 108 5.5 6.0 5.8 0.7 118 chr3L 2617240 intron Pxn - chr3L 2617299 intron Pxn - chr3L 2617358 intron Pxn - chr3L_5_2615001 chr3L_2615001 RAL-142 1119 chr3L 2626405 2626442 chr3L 2626538 2626601 10 149 3.0 4.0 3.5 2.2 196 chr3L 2626405 intron Pxn - chr3L 2626503 intron Pxn - chr3L 2626601 intron Pxn - chr3L_10_2625001 chr3L_2625001 RAL-142 1120 chr3L 2683915 2683923 chr3L 2684027 2684035 5 112 15.5 2.0 8.8 0.5 120 chr3L 2683915 intron Fife - chr3L 2683975 intron Fife - chr3L 2684035 intron Fife - chr3L_5_2680001 chr3L_2680001 RAL-142 1121 chr3L 2683927 2683970 chr3L 2684023 2684085 12 101 5.5 2.0 3.8 2.5 158 chr3L 2683927 intron Fife - chr3L 2684006 intron Fife - chr3L 2684085 intron Fife - chr3L_12_2680001 chr3L_2680001 RAL-142 1122 chr3L 2719507 2719554 chr3L 2719640 2719675 20 135 8.5 5.0 6.8 2.6 168 chr3L 2719507 3` UTR Mrtf - chr3L 2719591 3` UTR Mrtf - chr3L 2719675 3` UTR Mrtf - chr3L_20_2715001 chr3L_2715001 RAL-142 1123 chr3L 2751446 2751459 chr3L 2755774 2755777 F-element 6 4326 1.5 4.0 2.8 1.6 4331 chr3L 2751446 intron Mrtf - chr3L 2753612 intron Mrtf - chr3L 2755777 intron Mrtf - chr3L_6_2750001 chr3L_2750001 RAL-142 1124 chr3L 2795702 2795739 chr3L 2795859 2795880 12 150 7.5 7.5 7.5 1.4 178 chr3L 2795702 intron CG43444 - chr3L 2795791 intron CG43444 - chr3L 2795880 intron CG43444 - chr3L_12_2795001 chr3L_2795001 RAL-142 1125 chr3L 2891023 2891088 chr3L 2891132 2891198 12 102 4.5 3.0 3.8 2.5 175 chr3L 2891023 intron spz5 - chr3L 2891110 intron spz5 - chr3L 2891198 intron spz5 - chr3L_12_2890001 chr3L_2890001 RAL-142 1126 chr3L 2927807 2927865 chr3L 2936119 2936154 Tirant 8 8301 1.0 2.5 1.8 2.9 8347 chr3L 2927807 intron Shab + chr3L 2931980 intron Shab + chr3L 2936154 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-142 1127 chr3L 3029009 3029023 chr3L 3029120 3029123 7 113 4.0 5.5 4.8 1.2 114 chr3L 3029009 intergenic not near genes chr3L 3029066 intergenic not near genes chr3L 3029123 intergenic not near genes chr3L_7_3025001 chr3L_3025001 RAL-142 1128 chr3L 3040292 3040324 chr3L 3042116 3042140 S-element 6 1822 6.0 5.0 5.5 0.9 1848 chr3L 3040292 3` UTR CG2162 + chr3L 3041216 intergenic not near genes chr3L 3042140 intergenic Jafrac2 + chr3L_6_3040001 chr3L_3040001 RAL-142 1129 chr3L 3040327 3040351 chr3L 3042115 3042175 S-element 8 1811 4.5 5.0 4.8 1.4 1848 chr3L 3040327 3` UTR CG2162 + chr3L 3041251 intergenic not near genes chr3L 3042175 intergenic Jafrac2 + chr3L_8_3040001 chr3L_3040001 RAL-142 1130 chr3L 3051592 3051731 chr3L 3051710 3052008 28 177 1.0 1.0 1.0 14.0 416 chr3L 3051592 3` UTR CG32485 + chr3L 3051800 intergenic CG32485 + chr3L 3052008 intergenic CG32485 + chr3L_28_3050001 chr3L_3050001 RAL-142 1131 chr3L 3057229 3057276 chr3L 3057406 3057455 12 171 2.5 4.5 3.5 2.7 226 chr3L 3057229 exon CG32486 - chr3L 3057342 intron CG32486 - chr3L 3057455 exon CG32486 - chr3L_12_3055001 chr3L_3055001 RAL-142 1132 chr3L 3061276 3061302 chr3L 3069881 3069890 Tirant 4 8592 3.5 5.5 4.5 0.7 8614 chr3L 3061276 intron CG32486 - chr3L 3065583 intron CG32486 - chr3L 3069890 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-142 1133 chr3L 3061305 3061315 chr3L 3069878 3069882 Tirant 4 8579 3.0 5.0 4.0 0.8 8577 chr3L 3061305 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069882 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-142 1134 chr3L 3252312 3252360 chr3L 3252423 3252471 4 111 3.5 0.5 2.0 1.3 159 chr3L 3252312 5` UTR CR43626 + chr3L 3252392 5` UTR CR43626 + chr3L 3252471 5` UTR CR43626 + chr3L_4_3250001 chr3L_3250001 RAL-142 1135 chr3L 3263679 3263739 chr3L 3263797 3263838 5 114 3.5 1.0 2.2 1.6 159 chr3L 3263679 intron ckd + chr3L 3263758 intron ckd + chr3L 3263838 intron ckd + chr3L_5_3260001 chr3L_3260001 RAL-142 1136 chr3L 3281451 3281475 chr3L 3281940 3281977 Doc 13 504 1.5 2.5 2.0 4.3 526 chr3L 3281451 intron CG12017 + chr3L 3281714 intron CG12017 + chr3L 3281977 intron CG12017 + chr3L_13_3280001 chr3L_3280001 RAL-142 1137 chr3L 3317505 3317564 chr3L 3317613 3317678 9 111 1.5 3.0 2.2 2.8 173 chr3L 3317505 intergenic Drsl5 + chr3L 3317592 intergenic PIG-C -,Drsl5 + chr3L 3317678 intergenic PIG-C - chr3L_9_3315001 chr3L_3315001 RAL-142 1138 chr3L 3380090 3380138 chr3L 3380398 3380426 9 294 5.5 4.0 4.8 1.6 336 chr3L 3380090 intergenic CG12014 + chr3L 3380258 intergenic CG12014 + chr3L 3380426 intergenic CG12014 + chr3L_9_3380001 chr3L_3380001 RAL-142 1139 chr3L 3436275 3436312 chr3L 3436389 3436426 4 114 1.5 2.0 1.8 1.4 151 chr3L 3436275 intron eIF5B - chr3L 3436350 intron eIF5B - chr3L 3436426 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-142 1140 chr3L 3470129 3470186 chr3L 3470235 3470297 21 108 1.5 8.5 5.0 3.5 168 chr3L 3470129 intron CG14971 - chr3L 3470213 intron CG14971 - chr3L 3470297 intron CG14971 - chr3L_21_3470001 chr3L_3470001 RAL-142 1141 chr3L 3494164 3494202 chr3L 3494276 3494296 7 107 0.0 2.0 1.0 3.5 132 chr3L 3494164 intron CG42324 + chr3L 3494230 intron CG42324 + chr3L 3494296 intron CG42324 + chr3L_7_3490001 chr3L_3490001 RAL-142 1142 chr3L 3494759 3494781 chr3L 3494871 3494894 4 110 0.5 4.5 2.5 1.1 135 chr3L 3494759 intron CG42324 + chr3L 3494826 intron CG42324 + chr3L 3494894 intron CG42324 + chr3L_4_3490001 chr3L_3490001 RAL-142 1143 chr3L 3595520 3595569 chr3L 3595775 3595779 5 249 3.5 5.0 4.2 1.0 259 chr3L 3595520 intron Eip63E + chr3L 3595650 intron Eip63E + chr3L 3595779 intron Eip63E + chr3L_5_3595001 chr3L_3595001 RAL-142 1144 chr3L 3597052 3597103 chr3L 3597168 3597194 7 116 4.0 5.0 4.5 1.3 142 chr3L 3597052 intron Eip63E + chr3L 3597123 intron Eip63E + chr3L 3597194 intron Eip63E + chr3L_7_3595001 chr3L_3595001 RAL-142 1145 chr3L 3601292 3601316 chr3L 3606626 3606661 copia 7 5342 4.0 3.0 3.5 1.6 5369 chr3L 3601292 intron Eip63E + chr3L 3603976 intron Eip63E + chr3L 3606661 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-142 1146 chr3L 3601320 3601329 chr3L 3606625 3606672 copia 4 5330 3.0 3.0 3.0 1.0 5352 chr3L 3601320 intron Eip63E + chr3L 3603996 intron Eip63E + chr3L 3606672 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-142 1147 chr3L 3627205 3627261 chr3L 3627345 3627401 19 139 3.0 5.5 4.2 3.7 196 chr3L 3627205 intron dar1 + chr3L 3627303 intron dar1 + chr3L 3627401 intron dar1 + chr3L_19_3625001 chr3L_3625001 RAL-142 1148 chr3L 3709416 3709462 chr3L 3709530 3709579 5 116 2.0 5.5 3.8 1.0 163 chr3L 3709416 intergenic CR45675 + chr3L 3709498 intergenic not near genes chr3L 3709579 intergenic not near genes chr3L_5_3705001 chr3L_3705001 RAL-142 1149 chr3L 3766711 3766741 chr3L 3766828 3766855 12 117 1.5 4.5 3.0 3.0 144 chr3L 3766711 intron CG32264 - chr3L 3766783 intron CG32264 - chr3L 3766855 intron CG32264 - chr3L_12_3765001 chr3L_3765001 RAL-142 1150 chr3L 3768926 3768976 chr3L 3769062 3769093 12 133 2.5 2.5 2.5 3.4 167 chr3L 3768926 intron CG32264 - chr3L 3769010 intron CG32264 - chr3L 3769093 exon CG32264 - chr3L_12_3765001 chr3L_3765001 RAL-142 1151 chr3L 3815028 3815046 chr3L 3815144 3815162 6 112 9.0 8.5 8.8 0.6 134 chr3L 3815028 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815095 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815162 intron,intron Scsalpha +,CR43932 - chr3L_6_3815001 chr3L_3815001 RAL-142 1152 chr3L 3815047 3815074 chr3L 3815137 3815175 11 105 7.5 7.5 7.5 1.3 128 chr3L 3815047 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815111 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815175 intron,intron Scsalpha +,CR43932 - chr3L_11_3815001 chr3L_3815001 RAL-142 1153 chr3L 3833728 3833767 chr3L 3833986 3834001 pogo 10 260 4.5 3.5 4.0 2.0 273 chr3L 3833728 intron enc + chr3L 3833864 intron enc + chr3L 3834001 intron enc + chr3L_10_3830001 chr3L_3830001 RAL-142 1154 chr3L 3889113 3889146 chr3L 3889215 3889260 9 113 0.0 1.0 0.5 6.0 147 chr3L 3889113 intergenic not near genes chr3L 3889186 intergenic not near genes chr3L 3889260 intergenic not near genes chr3L_9_3885001 chr3L_3885001 RAL-142 1155 chr3L 3935804 3935849 chr3L 3935917 3935962 14 108 1.0 8.5 4.8 2.4 158 chr3L 3935804 5` UTR Eip63F-2 + chr3L 3935883 5` UTR Eip63F-2 + chr3L 3935962 5` UTR Eip63F-2 + chr3L_14_3935001 chr3L_3935001 RAL-142 1156 chr3L 3938548 3938569 chr3L 3938659 3938679 8 111 2.5 8.0 5.2 1.3 131 chr3L 3938548 intergenic CG12766 - chr3L 3938614 intergenic CG12766 - chr3L 3938679 3` UTR CG12766 - chr3L_8_3935001 chr3L_3935001 RAL-142 1157 chr3L 3981753 3981774 chr3L 3981836 3981869 12 106 5.5 6.0 5.8 1.8 116 chr3L 3981753 intergenic not near genes chr3L 3981811 intergenic not near genes chr3L 3981869 intergenic not near genes chr3L_12_3980001 chr3L_3980001 RAL-142 1158 chr3L 4015721 4015765 chr3L 4015829 4015867 4 110 2.5 2.0 2.2 1.2 146 chr3L 4015721 intergenic not near genes chr3L 4015794 intergenic not near genes chr3L 4015867 intergenic not near genes chr3L_4_4015001 chr3L_4015001 RAL-142 1159 chr3L 4040215 4040265 chr3L 4040311 4040326 14 93 5.0 2.5 3.8 2.9 111 chr3L 4040215 5` UTR CG11593 - chr3L 4040270 5` UTR CG11593 - chr3L 4040326 5` UTR CG11593 - chr3L_14_4040001 chr3L_4040001 RAL-142 1160 chr3L 4099449 4099490 chr3L 4099565 4099566 9 110 3.5 3.0 3.2 2.1 117 chr3L 4099449 intron CG14995 - chr3L 4099508 intron CG14995 - chr3L 4099566 intron CG14995 - chr3L_9_4095001 chr3L_4095001 RAL-142 1161 chr3L 4132918 4132972 chr3L 4133051 4133104 22 131 5.0 11.0 8.0 2.4 186 chr3L 4132918 intron ens - chr3L 4133011 intron ens - chr3L 4133104 intron ens - chr3L_22_4130001 chr3L_4130001 RAL-142 1162 chr3L 4146805 4146838 chr3L 4146917 4146948 8 110 0.0 9.5 4.8 1.4 143 chr3L 4146805 intergenic not near genes chr3L 4146876 intergenic not near genes chr3L 4146948 intergenic not near genes chr3L_8_4145001 chr3L_4145001 RAL-142 1163 chr3L 4195113 4195167 chr3L 4195239 4195299 16 129 5.5 4.5 5.0 2.7 186 chr3L 4195113 exon CG43367 + chr3L 4195206 intron CG43367 + chr3L 4195299 exon CG43367 + chr3L_16_4195001 chr3L_4195001 RAL-142 1164 chr3L 4328729 4328764 chr3L 4336246 4336276 412 8 7522 3.0 4.5 3.8 1.7 7547 chr3L 4328729 intron Cip4 - chr3L 4332502 intron Cip4 - chr3L 4336276 exon Cip4 - chr3L_8_4330001 chr3L_4330001 RAL-142 1165 chr3L 4341332 4341333 chr3L 21448026 21448027 5 17106694 19.0 26.0 22.5 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-142 1166 chr3L 4360976 4361025 chr3L 4362841 4362868 12 1868 2.5 5.0 3.8 2.5 1892 chr3L 4360976 intron Cip4 - chr3L 4361922 intron Cip4 - chr3L 4362868 intron Cip4 - chr3L_12_4360001 chr3L_4360001 RAL-142 1167 chr3L 4364207 4364230 chr3L 4364331 4364332 6 119 1.5 6.0 3.8 1.2 125 chr3L 4364207 intergenic Cip4 -,mRpS6 + chr3L 4364270 intergenic Cip4 -,mRpS6 + chr3L 4364332 intergenic mRpS6 +,Cip4 - chr3L_6_4360001 chr3L_4360001 RAL-142 1168 chr3L 4484690 4484750 chr3L 4484803 4484863 11 106 3.5 5.0 4.2 2.1 173 chr3L 4484690 intergenic CG11350 +,CG13722 - chr3L 4484776 intergenic CG13722 -,CG11350 + chr3L 4484863 intergenic CG13722 -,CG11350 + chr3L_11_4480001 chr3L_4480001 RAL-142 1169 chr3L 4491351 4491412 chr3L 4491479 4491540 18 124 7.5 0.5 4.0 3.6 189 chr3L 4491351 intergenic CG13722 - chr3L 4491446 intergenic CG13722 - chr3L 4491540 intergenic not near genes chr3L_18_4490001 chr3L_4490001 RAL-142 1170 chr3L 4676001 4676049 chr3L 4676117 4676148 14 113 6.5 2.0 4.2 2.7 147 chr3L 4676001 intron axo - chr3L 4676074 intron axo - chr3L 4676148 intron axo - chr3L_14_4675001 chr3L_4675001 RAL-142 1171 chr3L 4692718 4692731 chr3L 4692790 4692810 4 79 3.5 4.5 4.0 0.8 92 chr3L 4692718 intergenic RhoGEF64C + chr3L 4692764 intergenic RhoGEF64C + chr3L 4692810 5` UTR RhoGEF64C + chr3L_4_4690001 chr3L_4690001 RAL-142 1172 chr3L 4697580 4697628 chr3L 4697685 4697723 14 103 6.0 3.0 4.5 2.5 143 chr3L 4697580 intron RhoGEF64C + chr3L 4697652 intron,5` UTR RhoGEF64C +,CG13713 + chr3L 4697723 intron,exon RhoGEF64C +,CG13713 + chr3L_14_4695001 chr3L_4695001 RAL-142 1173 chr3L 4749584 4749633 chr3L 4749677 4749720 8 91 3.5 1.0 2.2 2.5 136 chr3L 4749584 intron RhoGEF64C + chr3L 4749652 intron RhoGEF64C + chr3L 4749720 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-142 1174 chr3L 4781760 4781826 chr3L 4781882 4781924 8 118 2.5 2.5 2.5 2.3 164 chr3L 4781760 intron RhoGEF64C + chr3L 4781842 intron RhoGEF64C + chr3L 4781924 intron RhoGEF64C + chr3L_8_4780001 chr3L_4780001 RAL-142 1175 chr3L 4797953 4797989 chr3L 4798049 4798072 18 97 3.5 12.0 7.8 2.0 119 chr3L 4797953 intergenic not near genes chr3L 4798012 intergenic not near genes chr3L 4798072 intergenic not near genes chr3L_18_4795001 chr3L_4795001 RAL-142 1176 chr3L 4837875 4837925 chr3L 4837972 4838003 17 97 3.0 5.0 4.0 3.4 128 chr3L 4837875 3` UTR CG13707 - chr3L 4837939 3` UTR CG13707 - chr3L 4838003 3` UTR CG13707 - chr3L_17_4835001 chr3L_4835001 RAL-142 1177 chr3L 4839526 4839577 chr3L 4839632 4839665 29 104 4.5 7.0 5.8 4.3 139 chr3L 4839526 intron CG13707 - chr3L 4839596 intron CG13707 - chr3L 4839665 intron CG13707 - chr3L_29_4835001 chr3L_4835001 RAL-142 1178 chr3L 4858287 4858334 chr3L 4858393 4858454 24 108 10.5 6.0 8.2 2.6 167 chr3L 4858287 intergenic not near genes chr3L 4858370 intergenic not near genes chr3L 4858454 intergenic not near genes chr3L_24_4855001 chr3L_4855001 RAL-142 1179 chr3L 4896160 4896186 chr3L 4896276 4896303 6 114 9.0 8.0 8.5 0.6 143 chr3L 4896160 intergenic CG17150 + chr3L 4896232 intergenic CG17150 + chr3L 4896303 intergenic not near genes chr3L_6_4895001 chr3L_4895001 RAL-142 1180 chr3L 4896188 4896209 chr3L 4896268 4896310 9 97 4.5 6.5 5.5 1.4 122 chr3L 4896188 intergenic CG17150 + chr3L 4896249 intergenic CG17150 + chr3L 4896310 intergenic not near genes chr3L_9_4895001 chr3L_4895001 RAL-142 1181 chr3L 4901102 4901128 chr3L 4907327 4907335 diver 4 6215 9.0 5.5 7.2 0.5 6233 chr3L 4901102 intergenic CG13704 + chr3L 4904218 intergenic not near genes chr3L 4907335 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-142 1182 chr3L 4901131 4901158 chr3L 4907314 4907383 diver 10 6212 4.0 3.5 3.8 2.1 6252 chr3L 4901131 intergenic CG13704 + chr3L 4904257 intergenic not near genes chr3L 4907383 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-142 1183 chr3L 5030754 5030793 chr3L 5030850 5030878 13 101 2.5 6.5 4.5 2.4 124 chr3L 5030754 intron Con - chr3L 5030816 intron Con - chr3L 5030878 intron Con - chr3L_13_5030001 chr3L_5030001 RAL-142 1184 chr3L 5034135 5034181 chr3L 5043313 5043368 roo 6 9182 4.0 2.5 3.2 1.4 9233 chr3L 5034135 intron Con - chr3L 5038752 intron Con - chr3L 5043368 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-142 1185 chr3L 5045431 5045486 chr3L 5050247 5050281 Doc 7 4813 2.0 3.0 2.5 2.0 4850 chr3L 5045431 intron Con - chr3L 5047856 intron Con - chr3L 5050281 intron Con - chr3L_7_5045001 chr3L_5045001 RAL-142 1186 chr3L 5103579 5103598 chr3L 5103694 5103712 7 114 11.5 0.0 5.8 1.0 133 chr3L 5103579 intergenic not near genes chr3L 5103646 intergenic not near genes chr3L 5103712 intergenic not near genes chr3L_7_5100001 chr3L_5100001 RAL-142 1187 chr3L 5104475 5104509 chr3L 5124626 5124669 16 20162 0.0 7.0 3.5 3.6 20194 chr3L 5104475 intergenic not near genes chr3L 5114572 intergenic not near genes chr3L 5124669 intergenic not near genes chr3L_16_5110001 chr3L_5110001 RAL-142 1188 chr3L 5194334 5194394 chr3L 5194442 5194507 6 110 4.5 2.0 3.2 1.4 173 chr3L 5194334 intron shep - chr3L 5194420 intron shep - chr3L 5194507 intron shep - chr3L_6_5190001 chr3L_5190001 RAL-142 1189 chr3L 5220801 5220812 chr3L 5220931 5220940 5 129 13.0 5.5 9.2 0.5 139 chr3L 5220801 intron shep - chr3L 5220870 intron shep - chr3L 5220940 intron shep - chr3L_5_5220001 chr3L_5220001 RAL-142 1190 chr3L 5220813 5220860 chr3L 5220926 5220952 10 115 3.0 5.0 4.0 2.0 139 chr3L 5220813 intron shep - chr3L 5220882 intron shep - chr3L 5220952 intron shep - chr3L_10_5220001 chr3L_5220001 RAL-142 1191 chr3L 5261156 5261169 chr3L 5261255 5261283 5 107 4.0 5.0 4.5 0.9 127 chr3L 5261156 intron shep - chr3L 5261220 intron shep - chr3L 5261283 intron shep - chr3L_5_5260001 chr3L_5260001 RAL-142 1192 chr3L 5271164 5271191 chr3L 5271274 5271304 10 107 1.5 9.0 5.2 1.6 140 chr3L 5271164 intron shep - chr3L 5271234 intron shep - chr3L 5271304 intron shep - chr3L_10_5270001 chr3L_5270001 RAL-142 1193 chr3L 5299141 5299178 chr3L 5306597 5306649 Quasimodo 4 7467 1.0 1.0 1.0 2.0 7508 chr3L 5299141 intergenic not near genes chr3L 5302895 intergenic not near genes chr3L 5306649 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-142 1194 chr3L 5327434 5327474 chr3L 5327549 5327580 4 114 1.0 1.5 1.2 1.8 146 chr3L 5327434 intergenic not near genes chr3L 5327507 intergenic not near genes chr3L 5327580 intergenic not near genes chr3L_4_5325001 chr3L_5325001 RAL-142 1195 chr3L 5339798 5339845 chr3L 5340072 5340124 12 275 5.5 3.5 4.5 2.2 326 chr3L 5339798 intergenic not near genes chr3L 5339961 intergenic not near genes chr3L 5340124 intergenic not near genes chr3L_12_5335001 chr3L_5335001 RAL-142 1196 chr3L 5388200 5388232 chr3L 5388537 5388550 7 340 7.5 8.0 7.8 0.8 350 chr3L 5388200 intergenic not near genes chr3L 5388375 intergenic not near genes chr3L 5388550 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-142 1197 chr3L 5449522 5449560 chr3L 5449619 5449674 5 107 2.0 2.5 2.2 1.6 152 chr3L 5449522 intergenic not near genes chr3L 5449598 intergenic not near genes chr3L 5449674 intergenic not near genes chr3L_5_5445001 chr3L_5445001 RAL-142 1198 chr3L 5514711 5514766 chr3L 5514823 5514878 17 109 3.5 4.0 3.8 3.5 167 chr3L 5514711 intron Lkr - chr3L 5514794 intron Lkr - chr3L 5514878 intron Lkr - chr3L_17_5510001 chr3L_5510001 RAL-142 1199 chr3L 5537138 5537179 chr3L 5537267 5537321 10 135 2.0 2.5 2.2 3.1 183 chr3L 5537138 intergenic not near genes chr3L 5537230 intergenic not near genes chr3L 5537321 intergenic not near genes chr3L_10_5535001 chr3L_5535001 RAL-142 1200 chr3L 5537687 5537748 chr3L 5538064 5538101 jockey 11 363 4.5 7.5 6.0 1.6 414 chr3L 5537687 intergenic not near genes chr3L 5537894 intergenic not near genes chr3L 5538101 intergenic CG10625 - chr3L_11_5535001 chr3L_5535001 RAL-142 1201 chr3L 5652780 5652788 chr3L 5652853 5652881 4 81 5.0 3.5 4.2 0.8 101 chr3L 5652780 intergenic not near genes chr3L 5652830 intergenic not near genes chr3L 5652881 intergenic not near genes chr3L_4_5650001 chr3L_5650001 RAL-142 1202 chr3L 5658199 5658204 chr3L 5658297 5658302 5 105 0.0 4.0 2.0 1.7 103 chr3L 5658199 5` UTR sif + chr3L 5658250 5` UTR sif + chr3L 5658302 intron sif + chr3L_5_5655001 chr3L_5655001 RAL-142 1203 chr3L 5666276 5666318 chr3L 5666395 5666432 5 117 0.0 11.5 5.8 0.7 156 chr3L 5666276 intron sif + chr3L 5666354 intron sif + chr3L 5666432 intron sif + chr3L_5_5665001 chr3L_5665001 RAL-142 1204 chr3L 5666928 5666948 chr3L 5667042 5667045 5 110 7.0 3.0 5.0 0.8 117 chr3L 5666928 intron sif + chr3L 5666986 intron sif + chr3L 5667045 intron sif + chr3L_5_5665001 chr3L_5665001 RAL-142 1205 chr3L 5666955 5666973 chr3L 5667029 5667087 12 100 5.5 2.0 3.8 2.5 132 chr3L 5666955 intron sif + chr3L 5667021 intron sif + chr3L 5667087 intron sif + chr3L_12_5665001 chr3L_5665001 RAL-142 1206 chr3L 5727161 5727197 chr3L 5727649 5727697 7 492 1.0 0.5 0.8 3.9 536 chr3L 5727161 intron sif + chr3L 5727429 intron sif + chr3L 5727697 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-142 1207 chr3L 5831295 5831342 chr3L 5831423 5831469 11 125 1.0 1.5 1.2 5.0 174 chr3L 5831295 intron vn - chr3L 5831382 intron vn - chr3L 5831469 intron vn - chr3L_11_5830001 chr3L_5830001 RAL-142 1208 chr3L 5910001 5910063 chr3L 5910272 5910339 pogo 9 266 4.5 0.0 2.2 2.8 338 chr3L 5910001 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910339 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-142 1209 chr3L 5926295 5926318 chr3L 5926518 5926527 4 220 8.5 7.5 8.0 0.4 232 chr3L 5926295 intron Vap-33B + chr3L 5926411 intron Vap-33B + chr3L 5926527 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-142 1210 chr3L 5926327 5926344 chr3L 5926510 5926565 BS 11 203 5.0 5.5 5.2 1.8 238 chr3L 5926327 intron Vap-33B + chr3L 5926446 intron Vap-33B + chr3L 5926565 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-142 1211 chr3L 6001657 6001711 chr3L 6004392 6004446 jockey 5 2733 4.5 0.0 2.2 1.6 2789 chr3L 6001657 intron PVRAP + chr3L 6003052 intron PVRAP + chr3L 6004446 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-142 1212 chr3L 6040343 6040393 chr3L 6042729 6042784 Doc 15 2388 5.5 7.0 6.2 2.1 2441 chr3L 6040343 intergenic Jon65Aiv + chr3L 6041564 intergenic not near genes chr3L 6042784 intergenic not near genes chr3L_15_6040001 chr3L_6040001 RAL-142 1213 chr3L 6052138 6052152 chr3L 6052246 6052268 5 116 0.0 10.0 5.0 0.8 130 chr3L 6052138 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052203 intergenic Jon65Aii + chr3L 6052268 intergenic Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-142 1214 chr3L 6052641 6052649 chr3L 6052741 6052759 8 102 13.0 10.0 11.5 0.6 118 chr3L 6052641 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052759 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-142 1215 chr3L 6052650 6052666 chr3L 6052740 6052765 9 97 10.0 9.5 9.8 0.8 115 chr3L 6052650 exon Jon65Aii + chr3L 6052708 intron Jon65Aii + chr3L 6052765 exon Jon65Aii + chr3L_9_6050001 chr3L_6050001 RAL-142 1216 chr3L 6064996 6065035 chr3L 6065104 6065132 15 107 7.0 4.0 5.5 2.3 136 chr3L 6064996 intergenic not near genes chr3L 6065064 intergenic not near genes chr3L 6065132 intergenic not near genes chr3L_15_6065001 chr3L_6065001 RAL-142 1217 chr3L 6065038 6065043 chr3L 6065102 6065155 5 102 5.5 4.0 4.8 0.9 117 chr3L 6065038 intergenic not near genes chr3L 6065096 intergenic not near genes chr3L 6065155 intergenic not near genes chr3L_5_6065001 chr3L_6065001 RAL-142 1218 chr3L 6119148 6119170 chr3L 6119260 6119282 7 110 0.5 11.5 6.0 1.0 134 chr3L 6119148 exon Ets65A + chr3L 6119215 intron Ets65A + chr3L 6119282 intron Ets65A + chr3L_7_6115001 chr3L_6115001 RAL-142 1219 chr3L 6132462 6132503 chr3L 6132578 6132614 7 111 4.0 2.0 3.0 1.8 152 chr3L 6132462 intergenic Cpr65Au - chr3L 6132538 intergenic Cpr65Au -,Lcp65Ag2 - chr3L 6132614 intergenic Lcp65Ag2 - chr3L_7_6130001 chr3L_6130001 RAL-142 1220 chr3L 6155680 6155709 chr3L 6155785 6155830 11 113 5.0 7.0 6.0 1.6 150 chr3L 6155680 intergenic CR45421 - chr3L 6155755 intergenic not near genes chr3L 6155830 intergenic not near genes chr3L_11_6155001 chr3L_6155001 RAL-142 1221 chr3L 6169110 6169112 chr3L 6169215 6169228 4 111 11.5 7.5 9.5 0.4 118 chr3L 6169110 3` UTR CG10289 - chr3L 6169169 3` UTR CG10289 - chr3L 6169228 3` UTR CG10289 - chr3L_4_6165001 chr3L_6165001 RAL-142 1222 chr3L 6169114 6169134 chr3L 6169212 6169250 13 111 9.0 7.5 8.2 1.4 136 chr3L 6169114 3` UTR CG10289 - chr3L 6169182 3` UTR CG10289 - chr3L 6169250 3` UTR CG10289 - chr3L_13_6165001 chr3L_6165001 RAL-142 1223 chr3L 6220882 6220922 chr3L 6230067 6230103 roo 7 9184 4.5 5.0 4.8 1.2 9221 chr3L 6220882 5` UTR pncr008:3L + chr3L 6225492 intergenic not near genes chr3L 6230103 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-142 1224 chr3L 6267289 6267338 chr3L 6267406 6267461 11 121 3.5 1.5 2.5 3.1 172 chr3L 6267289 intergenic not near genes chr3L 6267375 intergenic not near genes chr3L 6267461 intergenic not near genes chr3L_11_6265001 chr3L_6265001 RAL-142 1225 chr3L 6334986 6335037 chr3L 6335479 6335523 297 8 492 4.0 3.0 3.5 1.8 537 chr3L 6334986 intron CG13300 - chr3L 6335254 intron CG13300 - chr3L 6335523 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-142 1226 chr3L 6486499 6486555 chr3L 6486622 6486638 9 116 6.5 7.0 6.8 1.2 139 chr3L 6486499 3` UTR CG10147 - chr3L 6486568 3` UTR CG10147 - chr3L 6486638 3` UTR CG10147 - chr3L_9_6485001 chr3L_6485001 RAL-142 1227 chr3L 6781104 6781147 chr3L 6783152 6783192 Doc 4 2046 1.0 0.0 0.5 2.7 2088 chr3L 6781104 intergenic not near genes chr3L 6782148 intergenic not near genes chr3L 6783192 intergenic not near genes chr3L_4_6780001 chr3L_6780001 RAL-142 1228 chr3L 6798633 6798677 chr3L 6798941 6798944 17 302 3.5 4.5 4.0 3.4 311 chr3L 6798633 intergenic not near genes chr3L 6798788 intergenic not near genes chr3L 6798944 intergenic not near genes chr3L_17_6795001 chr3L_6795001 RAL-142 1229 chr3L 6820632 6820638 chr3L 6820750 6820756 4 117 1.5 6.5 4.0 0.8 124 chr3L 6820632 intergenic not near genes chr3L 6820694 intergenic not near genes chr3L 6820756 intergenic not near genes chr3L_4_6820001 chr3L_6820001 RAL-142 1230 chr3L 6868687 6868742 chr3L 6868800 6868855 10 113 0.5 2.5 1.5 4.0 168 chr3L 6868687 intergenic not near genes chr3L 6868771 intergenic not near genes chr3L 6868855 intergenic not near genes chr3L_10_6865001 chr3L_6865001 RAL-142 1231 chr3L 6887484 6887493 chr3L 6895011 6895019 roo 4 7527 6.5 1.5 4.0 0.8 7535 chr3L 6887484 intergenic not near genes chr3L 6891252 intergenic not near genes chr3L 6895019 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-142 1232 chr3L 6887497 6887514 chr3L 6895009 6895034 roo 8 7522 4.5 1.5 3.0 2.0 7537 chr3L 6887497 intergenic not near genes chr3L 6891266 intergenic not near genes chr3L 6895034 intergenic not near genes chr3L_8_6890001 chr3L_6890001 RAL-142 1233 chr3L 6907998 6908047 chr3L 6908101 6908160 7 98 4.5 0.0 2.2 2.2 162 chr3L 6907998 intergenic not near genes chr3L 6908079 intergenic not near genes chr3L 6908160 intergenic not near genes chr3L_7_6905001 chr3L_6905001 RAL-142 1234 chr3L 6934320 6934357 chr3L 6934446 6934502 5 134 1.5 0.5 1.0 2.5 182 chr3L 6934320 exon CG14820 + chr3L 6934411 intron CG14820 + chr3L 6934502 exon CG14820 + chr3L_5_6930001 chr3L_6930001 RAL-142 1235 chr3L 6974458 6974517 chr3L 6974594 6974637 6 131 2.5 5.0 3.8 1.2 179 chr3L 6974458 exon Galphai - chr3L 6974548 intron Galphai - chr3L 6974637 intron Galphai - chr3L_6_6970001 chr3L_6970001 RAL-142 1236 chr3L 6994884 6994915 chr3L 6995530 6995552 BS 11 643 0.5 15.5 8.0 1.2 668 chr3L 6994884 intergenic bin + chr3L 6995218 intergenic not near genes chr3L 6995552 intergenic not near genes chr3L_11_6995001 chr3L_6995001 RAL-142 1237 chr3L 7041899 7041923 chr3L 7042000 7042035 9 103 6.0 6.5 6.2 1.2 136 chr3L 7041899 intron Mp + chr3L 7041967 intron Mp + chr3L 7042035 intron Mp + chr3L_9_7040001 chr3L_7040001 RAL-142 1238 chr3L 7112570 7112607 chr3L 7112676 7112716 16 117 8.0 11.5 9.8 1.5 146 chr3L 7112570 intron form3 + chr3L 7112643 intron form3 + chr3L 7112716 intron form3 + chr3L_16_7110001 chr3L_7110001 RAL-142 1239 chr3L 7130141 7130147 chr3L 7130271 7130287 4 138 4.0 6.0 5.0 0.7 146 chr3L 7130141 intergenic CG15829 + chr3L 7130214 intergenic not near genes chr3L 7130287 intergenic not near genes chr3L_4_7130001 chr3L_7130001 RAL-142 1240 chr3L 7185718 7185751 chr3L 7185916 7185966 6 208 7.0 9.5 8.2 0.7 248 chr3L 7185718 intron Dscam2 - chr3L 7185842 intron Dscam2 - chr3L 7185966 intron Dscam2 - chr3L_6_7185001 chr3L_7185001 RAL-142 1241 chr3L 7200210 7200275 chr3L 7200342 7200404 11 118 3.5 3.0 3.2 2.6 194 chr3L 7200210 intergenic not near genes chr3L 7200307 intergenic not near genes chr3L 7200404 intergenic not near genes chr3L_11_7200001 chr3L_7200001 RAL-142 1242 chr3L 7236611 7236622 chr3L 7236806 7236833 7 208 1.0 1.5 1.2 3.2 222 chr3L 7236611 intergenic CG14829 - chr3L 7236722 intergenic CG14829 - chr3L 7236833 3` UTR CG14829 - chr3L_7_7235001 chr3L_7235001 RAL-142 1243 chr3L 7377300 7377347 chr3L 7380423 7380464 297 23 3133 7.0 6.0 6.5 3.1 3164 chr3L 7377300 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380464 intron SMSr - chr3L_23_7375001 chr3L_7375001 RAL-142 1244 chr3L 7410480 7410532 chr3L 7410580 7410645 7 103 0.0 0.0 0.0 7.0 165 chr3L 7410480 intergenic not near genes chr3L 7410562 intergenic not near genes chr3L 7410645 intergenic not near genes chr3L_7_7410001 chr3L_7410001 RAL-142 1245 chr3L 7449449 7449456 chr3L 7449522 7449528 4 88 1.5 13.5 7.5 0.5 79 chr3L 7449449 intron CG42458 + chr3L 7449488 intron CG42458 + chr3L 7449528 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-142 1246 chr3L 7450653 7450718 chr3L 7450770 7450833 10 113 3.5 2.5 3.0 2.5 180 chr3L 7450653 intron CG42458 + chr3L 7450743 intron CG42458 + chr3L 7450833 intron CG42458 + chr3L_10_7450001 chr3L_7450001 RAL-142 1247 chr3L 7486996 7487044 chr3L 7487285 7487340 4 294 2.0 3.0 2.5 1.1 344 chr3L 7486996 intron mthl6 + chr3L 7487168 exon mthl6 + chr3L 7487340 intron mthl6 + chr3L_4_7485001 chr3L_7485001 RAL-142 1248 chr3L 7498686 7498745 chr3L 7503527 7503586 F-element 10 4835 4.5 3.5 4.0 2.0 4900 chr3L 7498686 5` UTR CG8539 - chr3L 7501136 intergenic not near genes chr3L 7503586 intergenic not near genes chr3L_10_7500001 chr3L_7500001 RAL-142 1249 chr3L 7505383 7505416 chr3L 7505494 7505527 8 109 5.5 13.5 9.5 0.8 144 chr3L 7505383 intergenic CG7548 - chr3L 7505455 intergenic CG7548 - chr3L 7505527 intergenic CG7548 - chr3L_8_7505001 chr3L_7505001 RAL-142 1250 chr3L 7524116 7524173 chr3L 7524228 7524290 22 110 4.0 0.0 2.0 7.3 174 chr3L 7524116 intron ltl + chr3L 7524203 intron ltl + chr3L 7524290 intron ltl + chr3L_22_7520001 chr3L_7520001 RAL-142 1251 chr3L 7572250 7572313 chr3L 7572372 7572409 9 102 2.0 1.0 1.5 3.6 159 chr3L 7572250 intergenic not near genes chr3L 7572330 intergenic not near genes chr3L 7572409 intergenic not near genes chr3L_9_7570001 chr3L_7570001 RAL-142 1252 chr3L 7581613 7581643 chr3L 7581708 7581735 6 103 5.0 6.0 5.5 0.9 122 chr3L 7581613 intergenic not near genes chr3L 7581674 intergenic not near genes chr3L 7581735 intergenic not near genes chr3L_6_7580001 chr3L_7580001 RAL-142 1253 chr3L 7591155 7591179 chr3L 7591238 7591250 7 93 3.5 4.5 4.0 1.4 95 chr3L 7591155 intergenic CG7716 - chr3L 7591202 intergenic CG7716 - chr3L 7591250 intergenic CG7716 - chr3L_7_7590001 chr3L_7590001 RAL-142 1254 chr3L 7793703 7793732 chr3L 7800780 7800819 297 7 7085 5.0 2.5 3.8 1.5 7116 chr3L 7793703 intron CG32369 - chr3L 7797261 intron CG32369 - chr3L 7800819 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-142 1255 chr3L 7903049 7903062 chr3L 7903166 7903178 4 116 0.5 1.5 1.0 2.0 129 chr3L 7903049 intron pbl - chr3L 7903114 intron pbl - chr3L 7903178 intron pbl - chr3L_4_7900001 chr3L_7900001 RAL-142 1256 chr3L 7903065 7903080 chr3L 7903161 7903196 4 112 0.0 1.5 0.8 2.2 131 chr3L 7903065 intron pbl - chr3L 7903130 intron pbl - chr3L 7903196 intron pbl - chr3L_4_7900001 chr3L_7900001 RAL-142 1257 chr3L 7916817 7916857 chr3L 7926023 7926063 roo 12 9203 5.0 8.0 6.5 1.6 9246 chr3L 7916817 3` UTR syd - chr3L 7921440 intron syd - chr3L 7926063 3` UTR syd - chr3L_12_7920001 chr3L_7920001 RAL-142 1258 chr3L 7985340 7985393 chr3L 7987706 7987730 NOF 9 2360 2.5 2.5 2.5 2.6 2390 chr3L 7985340 intron nmo + chr3L 7986535 intron nmo + chr3L 7987730 intron nmo + chr3L_9_7985001 chr3L_7985001 RAL-142 1259 chr3L 7995928 7995979 chr3L 7996071 7996113 4 140 1.5 0.0 0.8 2.2 185 chr3L 7995928 intron nmo + chr3L 7996020 intron nmo + chr3L 7996113 intron nmo + chr3L_4_7995001 chr3L_7995001 RAL-142 1260 chr3L 8019664 8019735 chr3L 8024113 8024158 NOF 6 4438 2.5 2.5 2.5 1.7 4494 chr3L 8019664 intron nmo + chr3L 8021911 intron nmo + chr3L 8024158 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-142 1261 chr3L 8062820 8062854 chr3L 8062934 8062952 6 106 3.0 3.5 3.2 1.4 132 chr3L 8062820 intergenic not near genes chr3L 8062886 intergenic not near genes chr3L 8062952 intergenic not near genes chr3L_6_8060001 chr3L_8060001 RAL-142 1262 chr3L 8064609 8064631 chr3L 8064860 8064874 8 247 2.5 9.0 5.8 1.2 265 chr3L 8064609 intron Ect4 + chr3L 8064742 intron Ect4 + chr3L 8064874 intron Ect4 + chr3L_8_8060001 chr3L_8060001 RAL-142 1263 chr3L 8148048 8148053 chr3L 8148271 8148296 5 238 3.0 4.0 3.5 1.1 248 chr3L 8148048 intron CG13676 - chr3L 8148172 intron CG13676 - chr3L 8148296 intron CG13676 - chr3L_5_8145001 chr3L_8145001 RAL-142 1264 chr3L 8204406 8204458 chr3L 8204570 8204600 5 157 2.5 2.0 2.2 1.6 194 chr3L 8204406 intergenic not near genes chr3L 8204503 intergenic not near genes chr3L 8204600 intergenic not near genes chr3L_5_8200001 chr3L_8200001 RAL-142 1265 chr3L 8226683 8226723 chr3L 8226817 8226847 5 132 6.0 0.0 3.0 1.2 164 chr3L 8226683 intergenic not near genes chr3L 8226765 intergenic not near genes chr3L 8226847 intergenic not near genes chr3L_5_8225001 chr3L_8225001 RAL-142 1266 chr3L 8226973 8226998 chr3L 8227198 8227209 8 231 4.0 6.0 5.0 1.3 236 chr3L 8226973 intergenic not near genes chr3L 8227091 intergenic not near genes chr3L 8227209 intergenic not near genes chr3L_8_8225001 chr3L_8225001 RAL-142 1267 chr3L 8233569 8233581 chr3L 8238857 8238875 Rt1a 4 5286 2.0 13.5 7.8 0.5 5306 chr3L 8233569 intron CG7213 - chr3L 8236222 intron CG7213 - chr3L 8238875 intron,intron CG7213 -,Dscam4 + chr3L_4_8235001 chr3L_8235001 RAL-142 1268 chr3L 8295772 8295824 chr3L 8295950 8296017 13 184 6.0 2.5 4.2 2.5 245 chr3L 8295772 intergenic CG7201 - chr3L 8295894 intergenic not near genes chr3L 8296017 intergenic not near genes chr3L_13_8295001 chr3L_8295001 RAL-142 1269 chr3L 8363733 8363759 chr3L 8363850 8363876 11 114 3.0 1.0 2.0 3.7 143 chr3L 8363733 intergenic not near genes chr3L 8363804 intergenic not near genes chr3L 8363876 intergenic not near genes chr3L_11_8360001 chr3L_8360001 RAL-142 1270 chr3L 8402060 8402124 chr3L 8402187 8402241 18 126 2.0 5.5 3.8 3.8 181 chr3L 8402060 3` UTR CG7120 + chr3L 8402150 3` UTR CG7120 + chr3L 8402241 3` UTR,3` UTR,3` UTR CG7120 +,CG33057 -,mkg-p - chr3L_18_8400001 chr3L_8400001 RAL-142 1271 chr3L 8414088 8414129 chr3L 8414205 8414245 11 115 3.5 6.0 4.8 1.9 157 chr3L 8414088 intron,3` UTR Exo70 +,mtrm + chr3L 8414166 intron Exo70 + chr3L 8414245 exon Exo70 + chr3L_11_8410001 chr3L_8410001 RAL-142 1272 chr3L 8443545 8443582 chr3L 8443661 8443671 8 111 3.0 9.0 6.0 1.1 126 chr3L 8443545 3` UTR CG6983 - chr3L 8443608 3` UTR CG6983 - chr3L 8443671 3` UTR CG6983 - chr3L_8_8440001 chr3L_8440001 RAL-142 1273 chr3L 8481779 8481801 chr3L 8490940 8490944 roo 5 9150 7.5 8.5 8.0 0.6 9165 chr3L 8481779 intron CG43163 - chr3L 8486362 intron CG43163 - chr3L 8490944 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-142 1274 chr3L 8525499 8525533 chr3L 8525599 8525641 4 104 2.5 4.0 3.2 1.0 142 chr3L 8525499 5` UTR foi + chr3L 8525570 5` UTR foi + chr3L 8525641 5` UTR foi + chr3L_4_8525001 chr3L_8525001 RAL-142 1275 chr3L 8551715 8551772 chr3L 8551832 8551853 17 109 0.0 5.5 2.8 4.5 138 chr3L 8551715 intron rhea + chr3L 8551784 intron rhea + chr3L 8551853 intron rhea + chr3L_17_8550001 chr3L_8550001 RAL-142 1276 chr3L 8558626 8558694 chr3L 8558752 8558820 17 120 4.5 7.0 5.8 2.5 194 chr3L 8558626 intron rhea + chr3L 8558723 intron rhea + chr3L 8558820 intron rhea + chr3L_17_8555001 chr3L_8555001 RAL-142 1277 chr3L 8576256 8576273 chr3L 8576368 8576401 4 124 3.5 3.5 3.5 0.9 145 chr3L 8576256 intergenic CG6638 - chr3L 8576328 intergenic CG6638 -,CG43078 + chr3L 8576401 intergenic CG6638 -,CG43078 + chr3L_4_8575001 chr3L_8575001 RAL-142 1278 chr3L 8751699 8751703 chr3L 8751792 8751804 4 98 2.5 16.5 9.5 0.4 105 chr3L 8751699 intergenic CR44527 - chr3L 8751752 intergenic CR44527 - chr3L 8751804 intergenic CR44527 - chr3L_4_8750001 chr3L_8750001 RAL-142 1279 chr3L 8752394 8752418 chr3L 8752606 8752622 10 218 7.0 10.5 8.8 1.0 228 chr3L 8752394 intergenic not near genes chr3L 8752508 intergenic not near genes chr3L 8752622 intergenic not near genes chr3L_10_8750001 chr3L_8750001 RAL-142 1280 chr3L 8791255 8791308 chr3L 8796700 8796757 I-element 16 5450 7.0 0.0 3.5 3.6 5502 chr3L 8791255 exon Fhos + chr3L 8794006 intron Fhos + chr3L 8796757 intron Fhos + chr3L_16_8790001 chr3L_8790001 RAL-142 1281 chr3L 8849204 8849241 chr3L 8849289 8849361 10 100 10.5 3.0 6.8 1.3 157 chr3L 8849204 intron dally + chr3L 8849282 intron dally + chr3L 8849361 intron dally + chr3L_10_8845001 chr3L_8845001 RAL-142 1282 chr3L 8871917 8871974 chr3L 8872441 8872498 6 521 1.5 2.0 1.8 2.1 581 chr3L 8871917 intron dally + chr3L 8872208 intron dally + chr3L 8872498 intron dally + chr3L_6_8870001 chr3L_8870001 RAL-142 1283 chr3L 8928245 8928285 chr3L 8928356 8928381 5 107 2.0 1.0 1.5 2.0 136 chr3L 8928245 intron Tsp66E + chr3L 8928313 intron Tsp66E + chr3L 8928381 intron Tsp66E + chr3L_5_8925001 chr3L_8925001 RAL-142 1284 chr3L 9003932 9003936 chr3L 9004034 9004056 4 115 8.0 4.5 6.2 0.6 124 chr3L 9003932 intergenic not near genes chr3L 9003994 intergenic not near genes chr3L 9004056 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-142 1285 chr3L 9003937 9003948 chr3L 9004030 9004063 4 104 7.0 4.0 5.5 0.6 126 chr3L 9003937 intergenic not near genes chr3L 9004000 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_4_9000001 chr3L_9000001 RAL-142 1286 chr3L 9003950 9003973 chr3L 9004029 9004087 17 106 4.5 3.5 4.0 3.4 137 chr3L 9003950 intergenic not near genes chr3L 9004018 intergenic not near genes chr3L 9004087 intergenic not near genes chr3L_17_9000001 chr3L_9000001 RAL-142 1287 chr3L 9011100 9011117 chr3L 9011220 9011232 8 120 3.5 0.0 1.8 2.9 132 chr3L 9011100 intergenic not near genes chr3L 9011166 intergenic not near genes chr3L 9011232 intergenic not near genes chr3L_8_9010001 chr3L_9010001 RAL-142 1288 chr3L 9013691 9013693 chr3L 18417066 18417066 6 9403374 36.5 4.5 20.5 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-142 1289 chr3L 9030407 9030455 chr3L 9030506 9030569 10 111 3.5 3.0 3.2 2.4 162 chr3L 9030407 intergenic not near genes chr3L 9030488 intergenic not near genes chr3L 9030569 intergenic not near genes chr3L_10_9030001 chr3L_9030001 RAL-142 1290 chr3L 9067282 9067334 chr3L 9067396 9067439 11 107 2.5 3.5 3.0 2.8 157 chr3L 9067282 3` UTR CG4911 - chr3L 9067360 3` UTR CG4911 - chr3L 9067439 3` UTR CG4911 - chr3L_11_9065001 chr3L_9065001 RAL-142 1291 chr3L 9130538 9130581 chr3L 9134320 9134357 412 15 3780 5.5 3.0 4.2 2.9 3819 chr3L 9130538 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134357 intergenic Dhpr + chr3L_15_9130001 chr3L_9130001 RAL-142 1292 chr3L 9219213 9219245 chr3L 9219917 9219930 jockey 6 695 9.0 8.5 8.8 0.6 717 chr3L 9219213 intergenic not near genes chr3L 9219572 intergenic not near genes chr3L 9219930 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-142 1293 chr3L 9219248 9219269 chr3L 9219913 9219953 jockey 6 678 5.5 6.5 6.0 0.9 705 chr3L 9219248 intergenic not near genes chr3L 9219600 intergenic not near genes chr3L 9219953 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-142 1294 chr3L 9270593 9270645 chr3L 9278376 9278398 roo 9 7773 3.0 10.0 6.5 1.2 7805 chr3L 9270593 intron GluRIB + chr3L 9274496 intron GluRIB + chr3L 9278398 exon GluRIB + chr3L_9_9270001 chr3L_9270001 RAL-142 1295 chr3L 9320372 9320428 chr3L 9320486 9320498 10 95 6.0 8.0 7.0 1.2 126 chr3L 9320372 intergenic not near genes chr3L 9320435 intergenic not near genes chr3L 9320498 intergenic not near genes chr3L_10_9320001 chr3L_9320001 RAL-142 1296 chr3L 9359568 9359617 chr3L 9359683 9359733 12 122 6.5 6.0 6.2 1.7 165 chr3L 9359568 3` UTR CG32039 + chr3L 9359650 3` UTR CG32039 + chr3L 9359733 3` UTR CG32039 + chr3L_12_9355001 chr3L_9355001 RAL-142 1297 chr3L 9390820 9390869 chr3L 9390977 9390993 18 154 7.0 4.0 5.5 2.8 173 chr3L 9390820 intron CG4080 - chr3L 9390906 intron CG4080 - chr3L 9390993 intron CG4080 - chr3L_18_9390001 chr3L_9390001 RAL-142 1298 chr3L 9429485 9429541 chr3L 9429599 9429601 4 98 0.5 7.0 3.8 0.8 116 chr3L 9429485 intron,3` UTR RpS17 -,snoRNA:Psi28S-612 - chr3L 9429543 intron RpS17 - chr3L 9429601 intron RpS17 - chr3L_4_9425001 chr3L_9425001 RAL-142 1299 chr3L 9443491 9443494 chr3L 9445304 9445316 S-element 5 1820 17.5 20.0 18.8 0.3 1825 chr3L 9443491 intron CG33926 + chr3L 9444404 intron CG33926 + chr3L 9445316 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-142 1300 chr3L 9443495 9443544 chr3L 9445301 9445350 S-element 28 1811 8.0 19.5 13.8 1.9 1855 chr3L 9443495 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445350 intron CG33926 + chr3L_28_9440001 chr3L_9440001 RAL-142 1301 chr3L 9533748 9533782 chr3L 9541321 9541377 412 7 7586 5.0 7.5 6.2 1.0 7629 chr3L 9533748 intergenic not near genes chr3L 9537562 intergenic not near genes chr3L 9541377 intergenic not near genes chr3L_7_9535001 chr3L_9535001 RAL-142 1302 chr3L 9575906 9575939 chr3L 9580998 9581044 jockey 5 5089 0.5 3.5 2.0 1.7 5138 chr3L 9575906 intron CG42673 + chr3L 9578475 intron CG42673 + chr3L 9581044 intron CG42673 + chr3L_5_9575001 chr3L_9575001 RAL-142 1303 chr3L 9637823 9637852 chr3L 9637940 9637968 21 114 8.0 7.5 7.8 2.4 145 chr3L 9637823 exon fry - chr3L 9637896 intron fry - chr3L 9637968 intron fry - chr3L_21_9635001 chr3L_9635001 RAL-142 1304 chr3L 9637853 9637887 chr3L 9637934 9638004 19 109 4.0 7.5 5.8 2.8 151 chr3L 9637853 intron fry - chr3L 9637928 intron fry - chr3L 9638004 intron fry - chr3L_19_9635001 chr3L_9635001 RAL-142 1305 chr3L 9639003 9639059 chr3L 9639123 9639179 12 116 0.0 7.5 3.8 2.5 176 chr3L 9639003 intron,3` UTR fry -,CG8329 + chr3L 9639091 intron fry - chr3L 9639179 intron fry - chr3L_12_9635001 chr3L_9635001 RAL-142 1306 chr3L 9654068 9654124 chr3L 9655247 9655300 10 1171 6.0 2.5 4.2 1.9 1232 chr3L 9654068 intron,intron fry -,CG33696 + chr3L 9654684 intron,intron fry -,CG33696 + chr3L 9655300 intron,intron fry -,CG33696 + chr3L_10_9650001 chr3L_9650001 RAL-142 1307 chr3L 9687755 9687792 chr3L 9687861 9687871 6 103 2.0 3.0 2.5 1.7 116 chr3L 9687755 intron CG6767 - chr3L 9687813 intron CG6767 - chr3L 9687871 intron CG6767 - chr3L_6_9685001 chr3L_9685001 RAL-142 1308 chr3L 9693599 9693640 chr3L 9693699 9693744 5 111 2.5 2.0 2.2 1.6 145 chr3L 9693599 intron CG6767 - chr3L 9693672 intron CG6767 - chr3L 9693744 intron CG6767 - chr3L_5_9690001 chr3L_9690001 RAL-142 1309 chr3L 9732398 9732449 chr3L 9732498 9732562 24 107 2.5 4.5 3.5 5.3 164 chr3L 9732398 exon CG6749 - chr3L 9732480 intron CG6749 - chr3L 9732562 intron CG6749 - chr3L_24_9730001 chr3L_9730001 RAL-142 1310 chr3L 9750619 9750644 chr3L 9750730 9750755 13 110 3.5 3.5 3.5 2.9 136 chr3L 9750619 intron CG42268 - chr3L 9750687 intron CG42268 - chr3L 9750755 intron CG42268 - chr3L_13_9750001 chr3L_9750001 RAL-142 1311 chr3L 9824119 9824177 chr3L 9824232 9824299 21 113 4.5 0.0 2.2 6.6 180 chr3L 9824119 intron CG43897 + chr3L 9824209 intron CG43897 + chr3L 9824299 intron CG43897 + chr3L_21_9820001 chr3L_9820001 RAL-142 1312 chr3L 9829025 9829079 chr3L 9829139 9829169 28 104 3.5 5.0 4.2 5.4 144 chr3L 9829025 intron CG43897 + chr3L 9829097 intron CG43897 + chr3L 9829169 intron CG43897 + chr3L_28_9825001 chr3L_9825001 RAL-142 1313 chr3L 9831671 9831709 chr3L 9831787 9831825 14 114 4.5 10.0 7.2 1.7 154 chr3L 9831671 intron CG43897 + chr3L 9831748 intron CG43897 + chr3L 9831825 intron CG43897 + chr3L_14_9830001 chr3L_9830001 RAL-142 1314 chr3L 9848503 9848534 chr3L 9848603 9848610 4 96 2.5 0.0 1.2 1.8 107 chr3L 9848503 intron RasGAP1 - chr3L 9848556 intron RasGAP1 - chr3L 9848610 intron RasGAP1 - chr3L_4_9845001 chr3L_9845001 RAL-142 1315 chr3L 9850551 9850593 chr3L 9850648 9850706 9 108 1.5 0.0 0.8 5.0 155 chr3L 9850551 intron RasGAP1 - chr3L 9850628 intron RasGAP1 - chr3L 9850706 intron RasGAP1 - chr3L_9_9850001 chr3L_9850001 RAL-142 1316 chr3L 9874116 9874228 chr3L 9874224 9874359 13 129 0.0 0.0 0.0 13.0 243 chr3L 9874116 intergenic not near genes chr3L 9874238 intergenic not near genes chr3L 9874359 intergenic not near genes chr3L_13_9870001 chr3L_9870001 RAL-142 1317 chr3L 9929647 9929698 chr3L 9938460 9938514 roo 6 8815 1.0 2.5 1.8 2.1 8867 chr3L 9929647 intron CG34356 + chr3L 9934080 intron CG34356 + chr3L 9938514 intron CG34356 + chr3L_6_9930001 chr3L_9930001 RAL-142 1318 chr3L 9976964 9976988 chr3L 9977035 9977091 4 97 0.5 2.5 1.5 1.6 127 chr3L 9976964 intron dpr6 + chr3L 9977028 intron dpr6 + chr3L 9977091 intron dpr6 + chr3L_4_9975001 chr3L_9975001 RAL-142 1319 chr3L 9992687 9992735 chr3L 9992806 9992854 9 114 5.0 1.0 3.0 2.2 167 chr3L 9992687 intron dpr6 + chr3L 9992770 intron dpr6 + chr3L 9992854 intron dpr6 + chr3L_9_9990001 chr3L_9990001 RAL-142 1320 chr3L 10003125 10003178 chr3L 10003257 10003310 18 126 3.5 7.5 5.5 2.8 185 chr3L 10003125 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003310 intron dpr6 + chr3L_18_10000001 chr3L_10000001 RAL-142 1321 chr3L 10082536 10082582 chr3L 10082653 10082699 8 115 2.5 0.5 1.5 3.2 163 chr3L 10082536 intron dpr6 + chr3L 10082618 intron dpr6 + chr3L 10082699 intron dpr6 + chr3L_8_10080001 chr3L_10080001 RAL-142 1322 chr3L 10191253 10191308 chr3L 10191399 10191454 27 140 8.0 7.0 7.5 3.2 201 chr3L 10191253 exon ect - chr3L 10191354 intron ect - chr3L 10191454 intron ect - chr3L_27_10190001 chr3L_10190001 RAL-142 1323 chr3L 10222733 10222741 chr3L 10222848 10222856 4 114 0.5 8.5 4.5 0.7 123 chr3L 10222733 intron scramb1 - chr3L 10222794 intron scramb1 - chr3L 10222856 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-142 1324 chr3L 10222742 10222776 chr3L 10222846 10222885 14 110 0.5 8.0 4.2 2.7 143 chr3L 10222742 intron scramb1 - chr3L 10222814 intron scramb1 - chr3L 10222885 intron scramb1 - chr3L_14_10220001 chr3L_10220001 RAL-142 1325 chr3L 10308730 10308771 chr3L 10308823 10308861 7 102 1.5 5.5 3.5 1.6 131 chr3L 10308730 intergenic not near genes chr3L 10308796 intergenic not near genes chr3L 10308861 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-142 1326 chr3L 10328080 10328129 chr3L 10328227 10328276 12 142 7.0 3.5 5.2 1.9 196 chr3L 10328080 intergenic not near genes chr3L 10328178 intergenic not near genes chr3L 10328276 intergenic not near genes chr3L_12_10325001 chr3L_10325001 RAL-142 1327 chr3L 10376101 10376132 chr3L 10376212 10376243 4 110 7.0 3.0 5.0 0.7 142 chr3L 10376101 intergenic not near genes chr3L 10376172 intergenic not near genes chr3L 10376243 intergenic not near genes chr3L_4_10375001 chr3L_10375001 RAL-142 1328 chr3L 10430047 10430104 chr3L 10430153 10430216 17 105 4.5 8.0 6.2 2.4 169 chr3L 10430047 3` UTR Ir67b - chr3L 10430132 3` UTR Ir67b - chr3L 10430216 3` UTR Ir67b - chr3L_17_10430001 chr3L_10430001 RAL-142 1329 chr3L 10509462 10509508 chr3L 10509624 10509632 4 142 4.0 0.0 2.0 1.3 170 chr3L 10509462 intron A2bp1 + chr3L 10509547 intron A2bp1 + chr3L 10509632 intron A2bp1 + chr3L_4_10505001 chr3L_10505001 RAL-142 1330 chr3L 10520495 10520509 chr3L 10520618 10520632 5 122 3.5 7.0 5.2 0.8 137 chr3L 10520495 intron A2bp1 + chr3L 10520564 intron A2bp1 + chr3L 10520632 intron A2bp1 + chr3L_5_10520001 chr3L_10520001 RAL-142 1331 chr3L 10559490 10559519 chr3L 10559843 10559854 4 348 2.0 4.5 3.2 1.0 364 chr3L 10559490 intron A2bp1 + chr3L 10559672 intron A2bp1 + chr3L 10559854 intron A2bp1 + chr3L_4_10555001 chr3L_10555001 RAL-142 1332 chr3L 10584249 10584300 chr3L 10584366 10584422 42 120 3.0 6.5 4.8 7.2 173 chr3L 10584249 intron A2bp1 + chr3L 10584336 intron A2bp1 + chr3L 10584422 intron A2bp1 + chr3L_42_10580001 chr3L_10580001 RAL-142 1333 chr3L 10593603 10593659 chr3L 10593798 10593854 9 195 2.5 3.5 3.0 2.2 251 chr3L 10593603 intergenic A2bp1 + chr3L 10593728 intergenic A2bp1 + chr3L 10593854 intergenic A2bp1 + chr3L_9_10590001 chr3L_10590001 RAL-142 1334 chr3L 10600422 10600476 chr3L 10600539 10600593 7 111 5.0 0.5 2.8 1.8 171 chr3L 10600422 intergenic not near genes chr3L 10600508 intergenic not near genes chr3L 10600593 intergenic not near genes chr3L_7_10600001 chr3L_10600001 RAL-142 1335 chr3L 10614455 10614461 chr3L 10614530 10614538 4 86 2.0 3.0 2.5 1.1 83 chr3L 10614455 intergenic not near genes chr3L 10614496 intergenic not near genes chr3L 10614538 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-142 1336 chr3L 10618295 10618326 chr3L 10618477 10618482 4 172 13.5 0.0 6.8 0.5 187 chr3L 10618295 intergenic not near genes chr3L 10618388 intergenic not near genes chr3L 10618482 intergenic not near genes chr3L_4_10615001 chr3L_10615001 RAL-142 1337 chr3L 10621820 10621862 chr3L 10621942 10621975 9 120 2.5 6.5 4.5 1.6 155 chr3L 10621820 intergenic not near genes chr3L 10621898 intergenic not near genes chr3L 10621975 intergenic not near genes chr3L_9_10620001 chr3L_10620001 RAL-142 1338 chr3L 10658062 10658196 chr3L 10658166 10658346 9 133 0.0 0.0 0.0 9.0 284 chr3L 10658062 intron CG32066 - chr3L 10658204 intron CG32066 - chr3L 10658346 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-142 1339 chr3L 10799974 10800012 chr3L 10800068 10800121 8 102 8.5 3.5 6.0 1.1 147 chr3L 10799974 intergenic not near genes chr3L 10800048 intergenic not near genes chr3L 10800121 intergenic not near genes chr3L_8_10800001 chr3L_10800001 RAL-142 1340 chr3L 10811747 10811795 chr3L 10811859 10811907 12 111 4.0 3.0 3.5 2.7 160 chr3L 10811747 intergenic not near genes chr3L 10811827 intergenic not near genes chr3L 10811907 intergenic not near genes chr3L_12_10810001 chr3L_10810001 RAL-142 1341 chr3L 10888792 10888850 chr3L 10888939 10888997 15 145 3.5 9.0 6.2 2.1 205 chr3L 10888792 intergenic not near genes chr3L 10888894 intergenic not near genes chr3L 10888997 intergenic not near genes chr3L_15_10885001 chr3L_10885001 RAL-142 1342 chr3L 10937242 10937263 chr3L 10937359 10937380 5 117 1.5 0.0 0.8 2.8 138 chr3L 10937242 intergenic not near genes chr3L 10937311 intergenic not near genes chr3L 10937380 intergenic not near genes chr3L_5_10935001 chr3L_10935001 RAL-142 1343 chr3L 10941396 10941419 chr3L 10941516 10941534 9 117 7.0 0.0 3.5 2.0 138 chr3L 10941396 intergenic not near genes chr3L 10941465 intergenic not near genes chr3L 10941534 intergenic not near genes chr3L_9_10940001 chr3L_10940001 RAL-142 1344 chr3L 10951265 10951294 chr3L 10951373 10951386 5 106 0.0 3.5 1.8 1.8 121 chr3L 10951265 intergenic not near genes chr3L 10951326 intergenic not near genes chr3L 10951386 intergenic not near genes chr3L_5_10950001 chr3L_10950001 RAL-142 1345 chr3L 10956414 10956469 chr3L 10956567 10956622 4 141 3.0 4.5 3.8 0.8 208 chr3L 10956414 intergenic not near genes chr3L 10956518 intergenic not near genes chr3L 10956622 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-142 1346 chr3L 10958173 10958231 chr3L 10958290 10958325 9 100 3.5 0.0 1.8 3.2 152 chr3L 10958173 intergenic not near genes chr3L 10958249 intergenic not near genes chr3L 10958325 intergenic not near genes chr3L_9_10955001 chr3L_10955001 RAL-142 1347 chr3L 11018528 11018573 chr3L 11018649 11018694 6 121 1.0 4.5 2.8 1.6 166 chr3L 11018528 intergenic not near genes chr3L 11018611 intergenic not near genes chr3L 11018694 intergenic not near genes chr3L_6_11015001 chr3L_11015001 RAL-142 1348 chr3L 11105266 11105321 chr3L 11107012 11107050 X-element 16 1740 13.5 4.5 9.0 1.6 1784 chr3L 11105266 intergenic not near genes chr3L 11106158 intergenic not near genes chr3L 11107050 exon CG32073 - chr3L_16_11105001 chr3L_11105001 RAL-142 1349 chr3L 11127896 11127958 chr3L 11128034 11128061 13 132 3.0 6.0 4.5 2.4 165 chr3L 11127896 intron CG42575 + chr3L 11127978 intron CG42575 + chr3L 11128061 intron CG42575 + chr3L_13_11125001 chr3L_11125001 RAL-142 1350 chr3L 11131792 11131817 chr3L 11132071 11132092 8 281 9.0 4.0 6.5 1.1 300 chr3L 11131792 intron CG42575 + chr3L 11131942 intron,3` UTR CG42575 +,CG32074 - chr3L 11132092 intron,exon CG42575 +,CG32074 - chr3L_8_11130001 chr3L_11130001 RAL-142 1351 chr3L 11135517 11135527 chr3L 11135772 11135791 4 262 3.5 0.0 1.8 1.4 274 chr3L 11135517 intergenic CG14143 + chr3L 11135654 intergenic CG14143 +,CG32082 + chr3L 11135791 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-142 1352 chr3L 11224519 11224578 chr3L 11224676 11224734 17 155 4.0 9.0 6.5 2.3 215 chr3L 11224519 intron CG42671 + chr3L 11224626 intron CG42671 + chr3L 11224734 intron CG42671 + chr3L_17_11220001 chr3L_11220001 RAL-142 1353 chr3L 11229962 11230011 chr3L 11230088 11230141 4 127 4.5 1.0 2.8 1.1 179 chr3L 11229962 intergenic CG42671 + chr3L 11230052 intergenic CG42671 + chr3L 11230141 intergenic not near genes chr3L_4_11230001 chr3L_11230001 RAL-142 1354 chr3L 11264435 11264490 chr3L 11271422 11271477 17.6 5 6987 2.5 2.5 2.5 1.4 7042 chr3L 11264435 intergenic not near genes chr3L 11267956 intergenic not near genes chr3L 11271477 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-142 1355 chr3L 11276628 11276687 chr3L 11276742 11276802 8 112 1.5 3.5 2.5 2.3 174 chr3L 11276628 intergenic not near genes chr3L 11276715 intergenic not near genes chr3L 11276802 intergenic not near genes chr3L_8_11275001 chr3L_11275001 RAL-142 1356 chr3L 11397563 11397583 chr3L 11397676 11397679 5 110 6.5 3.0 4.8 0.9 116 chr3L 11397563 exon CG44362 + chr3L 11397621 exon CG44362 + chr3L 11397679 exon CG44362 + chr3L_5_11395001 chr3L_11395001 RAL-142 1357 chr3L 11404797 11404852 chr3L 11404946 11405001 7 150 1.5 1.0 1.2 3.2 204 chr3L 11404797 intergenic not near genes chr3L 11404899 intergenic not near genes chr3L 11405001 intergenic not near genes chr3L_7_11400001 chr3L_11400001 RAL-142 1358 chr3L 11456875 11456912 chr3L 11457008 11457045 18 128 4.5 0.0 2.2 5.6 170 chr3L 11456875 intergenic CG12289 - chr3L 11456960 intergenic CG12289 - chr3L 11457045 intergenic CG12289 - chr3L_18_11455001 chr3L_11455001 RAL-142 1359 chr3L 11555882 11555947 chr3L 11556016 11556030 19 126 7.0 7.5 7.2 2.3 148 chr3L 11555882 intron Mob2 - chr3L 11555956 intron Mob2 - chr3L 11556030 intron Mob2 - chr3L_19_11555001 chr3L_11555001 RAL-142 1360 chr3L 11673939 11673959 chr3L 11674050 11674070 7 111 9.5 0.0 4.8 1.2 131 chr3L 11673939 intron CG32085 - chr3L 11674004 intron CG32085 - chr3L 11674070 intron CG32085 - chr3L_7_11670001 chr3L_11670001 RAL-142 1361 chr3L 11678068 11678125 chr3L 11678182 11678247 19 119 3.5 6.0 4.8 3.3 179 chr3L 11678068 intron CG32085 - chr3L 11678158 intron CG32085 - chr3L 11678247 intron CG32085 - chr3L_19_11675001 chr3L_11675001 RAL-142 1362 chr3L 11723059 11723108 chr3L 11727889 11727938 Doc 11 4828 8.0 7.0 7.5 1.3 4879 chr3L 11723059 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727938 3` UTR Bmcp + chr3L_11_11725001 chr3L_11725001 RAL-142 1363 chr3L 11743988 11744000 chr3L 11744131 11744142 4 143 16.5 6.0 11.2 0.3 154 chr3L 11743988 exon CG6024 - chr3L 11744065 intron CG6024 - chr3L 11744142 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-142 1364 chr3L 11744006 11744045 chr3L 11744125 11744188 17 131 8.0 5.5 6.8 2.2 182 chr3L 11744006 exon CG6024 - chr3L 11744097 intron CG6024 - chr3L 11744188 intron CG6024 - chr3L_17_11740001 chr3L_11740001 RAL-142 1365 chr3L 11770976 11771018 chr3L 11771077 11771139 20 115 3.0 4.0 3.5 4.4 163 chr3L 11770976 exon Muc68D - chr3L 11771058 exon Muc68D - chr3L 11771139 exon Muc68D - chr3L_20_11770001 chr3L_11770001 RAL-142 1366 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 18.0 24.0 21.0 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 RAL-142 1367 chr3L 11810536 11810553 chr3L 11810643 11810666 4 110 2.0 5.5 3.8 0.8 130 chr3L 11810536 intron CG42255 - chr3L 11810601 intron CG42255 - chr3L 11810666 exon CG42255 - chr3L_4_11810001 chr3L_11810001 RAL-142 1368 chr3L 11811423 11811487 chr3L 11811536 11811563 24 107 11.0 8.0 9.5 2.3 140 chr3L 11811423 intron CG42255 - chr3L 11811493 intron CG42255 - chr3L 11811563 exon CG42255 - chr3L_24_11810001 chr3L_11810001 RAL-142 1369 chr3L 11849335 11849353 chr3L 11849446 11849488 4 125 4.0 3.0 3.5 0.9 153 chr3L 11849335 intergenic not near genes chr3L 11849412 intergenic not near genes chr3L 11849488 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-142 1370 chr3L 11864540 11864570 chr3L 11865877 11865907 pogo 8 1335 7.5 6.5 7.0 1.0 1367 chr3L 11864540 intron CG44837 - chr3L 11865224 intron CG44837 - chr3L 11865907 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-142 1371 chr3L 11867380 11867440 chr3L 11867496 11867555 8 110 3.0 3.0 3.0 2.0 175 chr3L 11867380 intron CG44837 - chr3L 11867468 intron CG44837 - chr3L 11867555 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-142 1372 chr3L 11943464 11943520 chr3L 11943596 11943656 12 130 4.5 2.0 3.2 2.9 192 chr3L 11943464 3` UTR Rpt4R + chr3L 11943560 intergenic Rpt4R +,CG5883 - chr3L 11943656 3` UTR CG5883 - chr3L_12_11940001 chr3L_11940001 RAL-142 1373 chr3L 12034868 12034915 chr3L 12034980 12035027 6 112 1.0 0.5 0.8 3.3 159 chr3L 12034868 intron rols - chr3L 12034948 intron rols - chr3L 12035027 intron rols - chr3L_6_12030001 chr3L_12030001 RAL-142 1374 chr3L 12052673 12052737 chr3L 12052797 12052845 20 118 6.5 7.0 6.8 2.6 172 chr3L 12052673 intron rols - chr3L 12052759 intron rols - chr3L 12052845 intron rols - chr3L_20_12050001 chr3L_12050001 RAL-142 1375 chr3L 12075395 12075458 chr3L 12075519 12075577 19 119 4.5 0.0 2.2 5.9 182 chr3L 12075395 intron Sema-5c - chr3L 12075486 intron Sema-5c - chr3L 12075577 intron Sema-5c - chr3L_19_12075001 chr3L_12075001 RAL-142 1376 chr3L 12084184 12084239 chr3L 12084317 12084371 7 131 0.0 0.5 0.2 5.8 187 chr3L 12084184 intergenic not near genes chr3L 12084278 intergenic not near genes chr3L 12084371 intergenic not near genes chr3L_7_12080001 chr3L_12080001 RAL-142 1377 chr3L 12089054 12089087 chr3L 12089169 12089201 5 115 1.5 2.0 1.8 1.8 147 chr3L 12089054 exon CG17154 + chr3L 12089128 3` UTR CG17154 + chr3L 12089201 3` UTR CG17154 + chr3L_5_12085001 chr3L_12085001 RAL-142 1378 chr3L 12119730 12119791 chr3L 12119862 12119918 29 129 7.5 5.0 6.2 4.0 188 chr3L 12119730 3` UTR ssp + chr3L 12119824 intergenic ssp +,CG11560 + chr3L 12119918 intergenic CG11560 +,ssp + chr3L_29_12115001 chr3L_12115001 RAL-142 1379 chr3L 12364257 12364283 chr3L 12366810 12366822 7 2546 3.0 0.5 1.8 2.5 2565 chr3L 12364257 intergenic not near genes chr3L 12365540 intergenic not near genes chr3L 12366822 intergenic not near genes chr3L_7_12365001 chr3L_12365001 RAL-142 1380 chr3L 12369502 12369568 chr3L 12369627 12369693 28 122 3.0 3.0 3.0 7.0 191 chr3L 12369502 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369693 intron Ncc69 - chr3L_28_12365001 chr3L_12365001 RAL-142 1381 chr3L 12371057 12371078 chr3L 12371189 12371202 4 131 9.0 0.5 4.8 0.7 145 chr3L 12371057 intron Ncc69 - chr3L 12371130 intron Ncc69 - chr3L 12371202 intron Ncc69 - chr3L_4_12370001 chr3L_12370001 RAL-142 1382 chr3L 12412886 12412924 chr3L 12413003 12413041 13 115 5.0 5.0 5.0 2.2 155 chr3L 12412886 intron CG32103 - chr3L 12412964 intron CG32103 - chr3L 12413041 intron CG32103 - chr3L_13_12410001 chr3L_12410001 RAL-142 1383 chr3L 12491678 12491734 chr3L 12491787 12491852 4 98 0.0 6.0 3.0 1.0 174 chr3L 12491678 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491765 intergenic CG10657 -,CR45682 + chr3L 12491852 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-142 1384 chr3L 12504111 12504137 chr3L 12504222 12504248 5 111 0.0 12.0 6.0 0.7 137 chr3L 12504111 intergenic vih +,CG10646 - chr3L 12504180 intergenic vih +,CG10646 - chr3L 12504248 intergenic vih +,CG10646 - chr3L_5_12500001 chr3L_12500001 RAL-142 1385 chr3L 12565383 12565446 chr3L 12565495 12565561 19 109 2.5 6.5 4.5 3.5 178 chr3L 12565383 intron sowah - chr3L 12565472 intron sowah - chr3L 12565561 intron sowah - chr3L_19_12565001 chr3L_12565001 RAL-142 1386 chr3L 12626121 12626146 chr3L 12626264 12626276 9 137 2.5 4.0 3.2 2.1 155 chr3L 12626121 intergenic not near genes chr3L 12626198 intergenic not near genes chr3L 12626276 intergenic not near genes chr3L_9_12625001 chr3L_12625001 RAL-142 1387 chr3L 12626148 12626161 chr3L 12626262 12626305 8 138 1.5 4.0 2.8 2.1 157 chr3L 12626148 intergenic not near genes chr3L 12626226 intergenic not near genes chr3L 12626305 intergenic not near genes chr3L_8_12625001 chr3L_12625001 RAL-142 1388 chr3L 12647940 12647945 chr3L 12648032 12648045 4 98 10.5 2.0 6.2 0.6 105 chr3L 12647940 5` UTR CR32111 + chr3L 12647992 5` UTR CR32111 + chr3L 12648045 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 RAL-142 1389 chr3L 12665942 12666000 chr3L 12666065 12666111 5 116 2.0 0.0 1.0 2.5 169 chr3L 12665942 intergenic not near genes chr3L 12666026 intergenic not near genes chr3L 12666111 intergenic not near genes chr3L_5_12665001 chr3L_12665001 RAL-142 1390 chr3L 12675289 12675330 chr3L 12675389 12675446 11 107 5.0 2.5 3.8 2.3 157 chr3L 12675289 intergenic not near genes chr3L 12675368 intergenic not near genes chr3L 12675446 intergenic not near genes chr3L_11_12675001 chr3L_12675001 RAL-142 1391 chr3L 12706609 12706656 chr3L 12706771 12706802 20 159 6.0 5.5 5.8 2.9 193 chr3L 12706609 intron mirr + chr3L 12706706 intron mirr + chr3L 12706802 intron mirr + chr3L_20_12705001 chr3L_12705001 RAL-142 1392 chr3L 12713272 12713278 chr3L 12713735 12713743 4 469 6.0 1.0 3.5 0.9 471 chr3L 12713272 intergenic not near genes chr3L 12713508 intergenic not near genes chr3L 12713743 intergenic not near genes chr3L_4_12710001 chr3L_12710001 RAL-142 1393 chr3L 12857967 12858004 chr3L 12858089 12858133 13 127 1.0 2.0 1.5 5.2 166 chr3L 12857967 3` UTR CG32107 - chr3L 12858050 3` UTR CG32107 - chr3L 12858133 3` UTR CG32107 - chr3L_13_12855001 chr3L_12855001 RAL-142 1394 chr3L 12863866 12863929 chr3L 12863993 12864016 7 114 1.5 1.0 1.2 3.2 150 chr3L 12863866 intergenic not near genes chr3L 12863941 intergenic not near genes chr3L 12864016 intergenic not near genes chr3L_7_12860001 chr3L_12860001 RAL-142 1395 chr3L 12867998 12868054 chr3L 12868119 12868129 6 99 3.5 3.0 3.2 1.4 131 chr3L 12867998 intergenic not near genes chr3L 12868064 intergenic not near genes chr3L 12868129 intergenic not near genes chr3L_6_12865001 chr3L_12865001 RAL-142 1396 chr3L 12874898 12874938 chr3L 12877225 12877265 jockey 7 2321 1.0 2.5 1.8 2.5 2367 chr3L 12874898 intergenic not near genes chr3L 12876082 intergenic not near genes chr3L 12877265 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-142 1397 chr3L 12894790 12894810 chr3L 12894882 12894892 5 97 8.0 6.5 7.2 0.6 102 chr3L 12894790 intergenic CG14118 + chr3L 12894841 intergenic CG14118 + chr3L 12894892 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-142 1398 chr3L 13000976 13001026 chr3L 13001100 13001139 7 121 3.0 4.0 3.5 1.6 163 chr3L 13000976 intergenic not near genes chr3L 13001058 intergenic not near genes chr3L 13001139 intergenic not near genes chr3L_7_13000001 chr3L_13000001 RAL-142 1399 chr3L 13031557 13031605 chr3L 13031670 13031727 23 118 6.0 8.0 7.0 2.9 170 chr3L 13031557 intron CG17672 + chr3L 13031642 intron CG17672 + chr3L 13031727 intron CG17672 + chr3L_23_13030001 chr3L_13030001 RAL-142 1400 chr3L 13034449 13034494 chr3L 13034545 13034579 7 97 6.0 11.0 8.5 0.7 130 chr3L 13034449 intron CG17672 + chr3L 13034514 intron CG17672 + chr3L 13034579 intron CG17672 + chr3L_7_13030001 chr3L_13030001 RAL-142 1401 chr3L 13047714 13047721 chr3L 13047829 13047836 5 115 22.0 12.5 17.2 0.3 122 chr3L 13047714 3` UTR CG11279 + chr3L 13047775 3` UTR CG11279 + chr3L 13047836 3` UTR CG11279 + chr3L_5_13045001 chr3L_13045001 RAL-142 1402 chr3L 13047722 13047761 chr3L 13047828 13047869 16 111 12.5 11.5 12.0 1.2 147 chr3L 13047722 3` UTR CG11279 + chr3L 13047796 3` UTR CG11279 + chr3L 13047869 3` UTR CG11279 + chr3L_16_13045001 chr3L_13045001 RAL-142 1403 chr3L 13107860 13107875 chr3L 13107946 13107978 5 107 2.0 0.5 1.2 2.3 118 chr3L 13107860 intergenic not near genes chr3L 13107919 intergenic not near genes chr3L 13107978 intergenic not near genes chr3L_5_13105001 chr3L_13105001 RAL-142 1404 chr3L 13144095 13144145 chr3L 13144207 13144255 5 108 1.5 1.0 1.2 2.3 160 chr3L 13144095 intergenic not near genes chr3L 13144175 intergenic not near genes chr3L 13144255 intergenic not near genes chr3L_5_13140001 chr3L_13140001 RAL-142 1405 chr3L 13159255 13159296 chr3L 13159369 13159381 13 105 7.0 3.5 5.2 2.1 126 chr3L 13159255 intergenic not near genes chr3L 13159318 intergenic not near genes chr3L 13159381 intergenic not near genes chr3L_13_13155001 chr3L_13155001 RAL-142 1406 chr3L 13174231 13174271 chr3L 13174355 13174398 6 122 1.0 1.5 1.2 2.7 167 chr3L 13174231 intergenic snky + chr3L 13174314 intergenic snky + chr3L 13174398 intergenic snky + chr3L_6_13170001 chr3L_13170001 RAL-142 1407 chr3L 13184388 13184439 chr3L 13186043 13186094 6 1656 16.0 13.5 14.8 0.4 1706 chr3L 13184388 intergenic not near genes chr3L 13185241 intergenic not near genes chr3L 13186094 intergenic not near genes chr3L_6_13185001 chr3L_13185001 RAL-142 1408 chr3L 13267253 13267317 chr3L 13267400 13267465 17 141 3.5 7.5 5.5 2.6 212 chr3L 13267253 intron caps + chr3L 13267359 intron caps + chr3L 13267465 intron caps + chr3L_17_13265001 chr3L_13265001 RAL-142 1409 chr3L 13315886 13315943 chr3L 13316185 13316241 7 298 0.0 2.5 1.2 3.2 355 chr3L 13315886 intergenic not near genes chr3L 13316064 intergenic not near genes chr3L 13316241 intergenic not near genes chr3L_7_13315001 chr3L_13315001 RAL-142 1410 chr3L 13374240 13374269 chr3L 13374332 13374373 7 113 3.0 3.5 3.2 1.7 133 chr3L 13374240 intergenic not near genes chr3L 13374306 intergenic not near genes chr3L 13374373 intergenic not near genes chr3L_7_13370001 chr3L_13370001 RAL-142 1411 chr3L 13400490 13400543 chr3L 13400601 13400634 10 100 2.0 5.5 3.8 2.1 144 chr3L 13400490 intron sens - chr3L 13400562 intron sens - chr3L 13400634 intron sens - chr3L_10_13400001 chr3L_13400001 RAL-142 1412 chr3L 13525137 13525190 chr3L 13532955 13532961 roo 7 7806 1.0 3.5 2.2 2.2 7824 chr3L 13525137 intergenic not near genes chr3L 13529049 intergenic not near genes chr3L 13532961 intergenic not near genes chr3L_7_13525001 chr3L_13525001 RAL-142 1413 chr3L 13677522 13677555 chr3L 13677625 13677667 4 110 1.0 2.0 1.5 1.6 145 chr3L 13677522 intron bru-3 - chr3L 13677594 intron bru-3 - chr3L 13677667 intron bru-3 - chr3L_4_13675001 chr3L_13675001 RAL-142 1414 chr3L 13783153 13783190 chr3L 13783283 13783302 6 124 2.5 1.0 1.8 2.1 149 chr3L 13783153 intron bru-3 - chr3L 13783228 intron bru-3 - chr3L 13783302 intron bru-3 - chr3L_6_13780001 chr3L_13780001 RAL-142 1415 chr3L 13804524 13804564 chr3L 13822836 13822885 roo 9 18315 4.5 3.5 4.0 1.8 18361 chr3L 13804524 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822885 intergenic not near genes chr3L_9_13810001 chr3L_13810001 RAL-142 1416 chr3L 13841125 13841158 chr3L 13841245 13841280 4 124 0.0 5.5 2.8 1.1 155 chr3L 13841125 3` UTR CG8757 - chr3L 13841202 3` UTR CG8757 - chr3L 13841280 exon CG8757 - chr3L_4_13840001 chr3L_13840001 RAL-142 1417 chr3L 13884369 13884385 chr3L 13884485 13884505 9 116 7.5 8.5 8.0 1.0 136 chr3L 13884369 intron dysc - chr3L 13884437 intron dysc - chr3L 13884505 intron dysc - chr3L_9_13880001 chr3L_13880001 RAL-142 1418 chr3L 13920390 13920430 chr3L 13920505 13920544 10 110 2.0 5.0 3.5 2.2 154 chr3L 13920390 intron Rgl - chr3L 13920467 intron Rgl - chr3L 13920544 intron Rgl - chr3L_10_13920001 chr3L_13920001 RAL-142 1419 chr3L 13993974 13994008 chr3L 13994089 13994124 5 115 2.0 5.0 3.5 1.1 150 chr3L 13993974 intergenic 26-29-p + chr3L 13994049 intergenic 26-29-p + chr3L 13994124 intergenic 26-29-p + chr3L_5_13990001 chr3L_13990001 RAL-142 1420 chr3L 14099413 14099433 chr3L 14099538 14099558 7 122 2.5 8.0 5.2 1.1 145 chr3L 14099413 intergenic not near genes chr3L 14099486 intergenic not near genes chr3L 14099558 intergenic not near genes chr3L_7_14095001 chr3L_14095001 RAL-142 1421 chr3L 14107238 14107287 chr3L 14107336 14107399 8 105 10.0 1.0 5.5 1.2 161 chr3L 14107238 intron Sox21a - chr3L 14107318 intron Sox21a - chr3L 14107399 intron Sox21a - chr3L_8_14105001 chr3L_14105001 RAL-142 1422 chr3L 14194699 14194734 chr3L 14194800 14194845 4 106 0.5 0.0 0.2 3.3 146 chr3L 14194699 intron nuf + chr3L 14194772 intron nuf + chr3L 14194845 intron nuf + chr3L_4_14190001 chr3L_14190001 RAL-142 1423 chr3L 14240000 14240002 chr3L 14240094 14240134 4 118 2.0 3.5 2.8 1.1 134 chr3L 14240000 intergenic not near genes chr3L 14240067 intergenic not near genes chr3L 14240134 intergenic not near genes chr3L_4_14240001 chr3L_14240001 RAL-142 1424 chr3L 14267398 14267406 chr3L 14271825 14271853 F-element 4 4438 0.5 0.0 0.2 3.3 4455 chr3L 14267398 intergenic not near genes chr3L 14269626 intergenic not near genes chr3L 14271853 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-142 1425 chr3L 14311998 14312049 chr3L 14316837 14316897 X-element 9 4831 2.0 2.5 2.2 2.8 4899 chr3L 14311998 exon fz + chr3L 14314448 intron fz + chr3L 14316897 intron fz + chr3L_9_14310001 chr3L_14310001 RAL-142 1426 chr3L 14326950 14326992 chr3L 14327120 14327162 10 170 2.5 3.0 2.8 2.6 212 chr3L 14326950 intron fz + chr3L 14327056 intron fz + chr3L 14327162 intron fz + chr3L_10_14325001 chr3L_14325001 RAL-142 1427 chr3L 14341399 14341435 chr3L 14341549 14341605 8 166 0.0 0.5 0.2 6.7 206 chr3L 14341399 intron fz + chr3L 14341502 intron fz + chr3L 14341605 intron fz + chr3L_8_14340001 chr3L_14340001 RAL-142 1428 chr3L 14348896 14348921 chr3L 14348997 14349042 4 108 0.0 1.5 0.8 2.2 146 chr3L 14348896 intron fz + chr3L 14348969 intron fz + chr3L 14349042 intron fz + chr3L_4_14345001 chr3L_14345001 RAL-142 1429 chr3L 14453697 14453726 chr3L 14453800 14453848 4 114 0.0 5.0 2.5 1.1 151 chr3L 14453697 intron bbg - chr3L 14453772 intron bbg - chr3L 14453848 intron bbg - chr3L_4_14450001 chr3L_14450001 RAL-142 1430 chr3L 14505802 14505865 chr3L 14505955 14506018 5 153 1.0 2.5 1.8 1.8 216 chr3L 14505802 intron bbg - chr3L 14505910 intron bbg - chr3L 14506018 intron bbg - chr3L_5_14505001 chr3L_14505001 RAL-142 1431 chr3L 14524305 14524351 chr3L 14529102 14529150 F-element 5 4798 2.0 0.0 1.0 2.5 4845 chr3L 14524305 intron bbg - chr3L 14526728 intron bbg - chr3L 14529150 intron bbg - chr3L_5_14525001 chr3L_14525001 RAL-142 1432 chr3L 14535290 14535355 chr3L 14535523 14535548 6 226 1.5 0.0 0.8 3.3 258 chr3L 14535290 intron bbg - chr3L 14535419 intron bbg - chr3L 14535548 intron bbg - chr3L_6_14535001 chr3L_14535001 RAL-142 1433 chr3L 14652614 14652672 chr3L 14652718 14652732 7 98 1.5 1.0 1.2 3.2 118 chr3L 14652614 intron dlp + chr3L 14652673 intron dlp + chr3L 14652732 intron dlp + chr3L_7_14650001 chr3L_14650001 RAL-142 1434 chr3L 14725586 14725626 chr3L 14728609 14728663 Doc 4 3027 1.0 0.0 0.5 2.7 3077 chr3L 14725586 intron ome + chr3L 14727124 intron ome + chr3L 14728663 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-142 1435 chr3L 14825130 14825155 chr3L 14832892 14832916 Stalker2 4 7762 0.0 3.0 1.5 1.6 7786 chr3L 14825130 intron CG17839 + chr3L 14829023 intron CG17839 + chr3L 14832916 intron CG17839 + chr3L_4_14825001 chr3L_14825001 RAL-142 1436 chr3L 14917655 14917687 chr3L 14917754 14917799 5 105 0.5 2.5 1.5 2.0 144 chr3L 14917655 intron DCX-EMAP + chr3L 14917727 intron DCX-EMAP + chr3L 14917799 intron DCX-EMAP + chr3L_5_14915001 chr3L_14915001 RAL-142 1437 chr3L 14954349 14954387 chr3L 14956051 14956091 transib2 4 1699 0.5 2.5 1.5 1.6 1742 chr3L 14954349 intergenic not near genes chr3L 14955220 intergenic not near genes chr3L 14956091 intergenic not near genes chr3L_4_14955001 chr3L_14955001 RAL-142 1438 chr3L 14970727 14970756 chr3L 14971072 14971101 F-element 7 345 6.5 3.5 5.0 1.2 374 chr3L 14970727 intergenic Tom + chr3L 14970914 intergenic not near genes chr3L 14971101 intergenic not near genes chr3L_7_14970001 chr3L_14970001 RAL-142 1439 chr3L 15053387 15053444 chr3L 15053761 15053817 4 372 1.0 2.5 1.8 1.4 430 chr3L 15053387 intron Sytbeta - chr3L 15053602 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053817 intron,3` UTR Sytbeta -,CG18649 - chr3L_4_15050001 chr3L_15050001 RAL-142 1440 chr3L 15070085 15070126 chr3L 15070329 15070369 7 235 10.5 28.5 19.5 0.3 284 chr3L 15070085 exon cp309 - chr3L 15070227 exon cp309 - chr3L 15070369 exon cp309 - chr3L_7_15070001 chr3L_15070001 RAL-142 1441 chr3L 15085016 15085049 chr3L 15086217 15086231 1360 5 1190 7.5 3.0 5.2 0.8 1215 chr3L 15085016 intron cp309 - chr3L 15085624 intron cp309 - chr3L 15086231 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-142 1442 chr3L 15085051 15085064 chr3L 15086214 15086217 1360 4 1166 5.5 1.5 3.5 0.9 1166 chr3L 15085051 intron cp309 - chr3L 15085634 intron cp309 - chr3L 15086217 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-142 1443 chr3L 15257401 15257446 chr3L 15257649 15257677 7 243 2.5 2.0 2.2 2.2 276 chr3L 15257401 intergenic not near genes chr3L 15257539 intergenic not near genes chr3L 15257677 intergenic not near genes chr3L_7_15255001 chr3L_15255001 RAL-142 1444 chr3L 15358335 15358388 chr3L 15358500 15358554 9 165 2.0 2.0 2.0 3.0 219 chr3L 15358335 intergenic not near genes chr3L 15358444 intergenic not near genes chr3L 15358554 intergenic not near genes chr3L_9_15355001 chr3L_15355001 RAL-142 1445 chr3L 15423738 15423780 chr3L 15426617 15426659 opus 5 2879 3.5 0.5 2.0 1.7 2921 chr3L 15423738 intergenic not near genes chr3L 15425198 intergenic not near genes chr3L 15426659 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-142 1446 chr3L 15533122 15533154 chr3L 15533239 15533271 11 114 0.0 9.5 4.8 1.9 149 chr3L 15533122 intergenic not near genes chr3L 15533196 intergenic not near genes chr3L 15533271 intergenic not near genes chr3L_11_15530001 chr3L_15530001 RAL-142 1447 chr3L 15600133 15600182 chr3L 15600253 15600318 9 126 5.5 0.0 2.8 2.4 185 chr3L 15600133 intron RhoGAP71E + chr3L 15600226 intron RhoGAP71E + chr3L 15600318 intron RhoGAP71E + chr3L_9_15600001 chr3L_15600001 RAL-142 1448 chr3L 15737391 15737401 chr3L 15737500 15737526 5 121 3.0 2.5 2.8 1.3 135 chr3L 15737391 intergenic not near genes chr3L 15737458 intergenic not near genes chr3L 15737526 intergenic not near genes chr3L_5_15735001 chr3L_15735001 RAL-142 1449 chr3L 15747540 15747593 chr3L 15747641 15747703 4 104 2.0 2.0 2.0 1.3 163 chr3L 15747540 5` UTR CR45240 + chr3L 15747622 5` UTR CR45240 + chr3L 15747703 5` UTR CR45240 + chr3L_4_15745001 chr3L_15745001 RAL-142 1450 chr3L 15754452 15754607 chr3L 15754579 15754723 5 121 0.0 0.0 0.0 5.0 271 chr3L 15754452 intergenic not near genes chr3L 15754588 intergenic not near genes chr3L 15754723 intergenic not near genes chr3L_5_15750001 chr3L_15750001 RAL-142 1451 chr3L 15782558 15782582 chr3L 15782670 15782704 5 127 0.0 6.0 3.0 1.2 146 chr3L 15782558 intergenic not near genes chr3L 15782631 intergenic not near genes chr3L 15782704 intergenic not near genes chr3L_5_15780001 chr3L_15780001 RAL-142 1452 chr3L 15798343 15798391 chr3L 15798533 15798586 9 185 2.5 1.0 1.8 3.2 243 chr3L 15798343 intergenic not near genes chr3L 15798464 intergenic not near genes chr3L 15798586 intergenic not near genes chr3L_9_15795001 chr3L_15795001 RAL-142 1453 chr3L 15832236 15832275 chr3L 15832340 15832391 13 111 2.5 2.0 2.2 4.1 155 chr3L 15832236 intergenic CG12713 +,dbo + chr3L 15832314 intergenic CG12713 +,dbo + chr3L 15832391 intergenic CG12713 +,dbo + chr3L_13_15830001 chr3L_15830001 RAL-142 1454 chr3L 15883182 15883205 chr3L 15883488 15883533 4 317 2.0 1.0 1.5 1.6 351 chr3L 15883182 intron pHCl - chr3L 15883358 intron pHCl - chr3L 15883533 intron pHCl - chr3L_4_15880001 chr3L_15880001 RAL-142 1455 chr3L 15912533 15912552 chr3L 15912630 15912665 4 101 7.0 1.5 4.2 0.8 132 chr3L 15912533 intron sff - chr3L 15912599 intron sff - chr3L 15912665 intron sff - chr3L_4_15910001 chr3L_15910001 RAL-142 1456 chr3L 15912555 15912581 chr3L 15912628 15912631 6 92 3.5 2.0 2.8 1.6 76 chr3L 15912555 intron sff - chr3L 15912593 intron sff - chr3L 15912631 intron sff - chr3L_6_15910001 chr3L_15910001 RAL-142 1457 chr3L 15939820 15939883 chr3L 15939931 15939974 8 99 2.5 1.5 2.0 2.7 154 chr3L 15939820 intron Pka-C3 - chr3L 15939897 intron Pka-C3 - chr3L 15939974 intron Pka-C3 - chr3L_8_15935001 chr3L_15935001 RAL-142 1458 chr3L 15981646 15981651 chr3L 15981767 15981772 5 121 11.0 8.5 9.8 0.5 126 chr3L 15981646 intron,3` UTR brm -,CG17027 + chr3L 15981709 intron,3` UTR brm -,CG17027 + chr3L 15981772 intron,3` UTR brm -,CG17027 + chr3L_5_15980001 chr3L_15980001 RAL-142 1459 chr3L 15981659 15981708 chr3L 15981765 15981811 9 118 5.0 8.5 6.8 1.2 152 chr3L 15981659 intron,3` UTR brm -,CG17027 + chr3L 15981735 intron,3` UTR brm -,CG17027 + chr3L 15981811 intron,3` UTR brm -,CG17027 + chr3L_9_15980001 chr3L_15980001 RAL-142 1460 chr3L 15989206 15989219 chr3L 15989322 15989336 8 116 3.5 4.0 3.8 1.7 130 chr3L 15989206 intron Hip14 + chr3L 15989271 intron Hip14 + chr3L 15989336 intron Hip14 + chr3L_8_15985001 chr3L_15985001 RAL-142 1461 chr3L 16080875 16080938 chr3L 16080988 16081051 9 111 3.0 4.0 3.5 2.0 176 chr3L 16080875 3` UTR Mbs + chr3L 16080963 3` UTR Mbs + chr3L 16081051 3` UTR Mbs + chr3L_9_16080001 chr3L_16080001 RAL-142 1462 chr3L 16184080 16184104 chr3L 16188934 16188958 X-element 11 4853 16.0 7.0 11.5 0.9 4878 chr3L 16184080 intergenic not near genes chr3L 16186519 intergenic not near genes chr3L 16188958 intergenic not near genes chr3L_11_16185001 chr3L_16185001 RAL-142 1463 chr3L 16184105 16184132 chr3L 16188928 16188952 X-element 14 4841 9.0 5.5 7.2 1.7 4847 chr3L 16184105 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188952 intergenic not near genes chr3L_14_16185001 chr3L_16185001 RAL-142 1464 chr3L 16279066 16279101 chr3L 16279166 16279217 18 113 1.5 3.0 2.2 5.6 151 chr3L 16279066 exon CG13050 - chr3L 16279142 intron CG13050 - chr3L 16279217 5` UTR CG13050 - chr3L_18_16275001 chr3L_16275001 RAL-142 1465 chr3L 16360879 16360916 chr3L 16360963 16361011 13 90 4.5 2.5 3.5 2.9 132 chr3L 16360879 intron CG45057 - chr3L 16360945 intron CG45057 - chr3L 16361011 intron CG45057 - chr3L_13_16360001 chr3L_16360001 RAL-142 1466 chr3L 16443820 16443875 chr3L 16446192 16446232 Doc 13 2367 5.0 3.0 4.0 2.6 2412 chr3L 16443820 intron,intron CG33158 +,dsx-c73A - chr3L 16445026 intron,intron CG33158 +,dsx-c73A - chr3L 16446232 intron,intron CG33158 +,dsx-c73A - chr3L_13_16445001 chr3L_16445001 RAL-142 1467 chr3L 16457493 16457556 chr3L 16457624 16457686 9 127 1.0 2.5 1.8 3.2 193 chr3L 16457493 intron CG33158 + chr3L 16457590 intron CG33158 + chr3L 16457686 intron CG33158 + chr3L_9_16455001 chr3L_16455001 RAL-142 1468 chr3L 16493951 16493958 chr3L 16494498 16494510 jockey 4 551 23.0 9.5 16.2 0.2 559 chr3L 16493951 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494230 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494510 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_4_16490001 chr3L_16490001 RAL-142 1469 chr3L 16493959 16494003 chr3L 16494496 16494555 jockey 38 540 10.0 9.5 9.8 3.5 596 chr3L 16493959 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494257 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494555 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_38_16490001 chr3L_16490001 RAL-142 1470 chr3L 16514515 16514563 chr3L 16514671 16514719 11 151 5.5 4.0 4.8 1.9 204 chr3L 16514515 intron CG43373 - chr3L 16514617 intron CG43373 - chr3L 16514719 intron CG43373 - chr3L_11_16510001 chr3L_16510001 RAL-142 1471 chr3L 16533531 16533586 chr3L 16533677 16533685 9 132 0.0 4.0 2.0 3.0 154 chr3L 16533531 intron CG43373 - chr3L 16533608 intron CG43373 - chr3L 16533685 intron CG43373 - chr3L_9_16530001 chr3L_16530001 RAL-142 1472 chr3L 16540039 16540075 chr3L 16540142 16540193 5 115 3.5 2.0 2.8 1.3 154 chr3L 16540039 intron CG43373 - chr3L 16540116 intron CG43373 - chr3L 16540193 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-142 1473 chr3L 16561089 16561141 chr3L 16561202 16561228 9 88 7.5 6.0 6.8 1.2 139 chr3L 16561089 intergenic not near genes chr3L 16561158 intergenic not near genes chr3L 16561228 intergenic not near genes chr3L_9_16560001 chr3L_16560001 RAL-142 1474 chr3L 16563202 16563256 chr3L 16563312 16563339 10 97 4.5 0.0 2.2 3.1 137 chr3L 16563202 intergenic Mipp1 - chr3L 16563270 intergenic Mipp1 - chr3L 16563339 intergenic Mipp1 - chr3L_10_16560001 chr3L_16560001 RAL-142 1475 chr3L 16610654 16610681 chr3L 16610774 16610801 11 118 15.5 11.0 13.2 0.8 147 chr3L 16610654 intergenic Su(P) -,Prosbeta6 - chr3L 16610728 3` UTR Su(P) - chr3L 16610801 exon Su(P) - chr3L_11_16610001 chr3L_16610001 RAL-142 1476 chr3L 16610685 16610713 chr3L 16610770 16610803 11 109 8.0 10.0 9.0 1.1 118 chr3L 16610685 3` UTR Su(P) - chr3L 16610744 exon Su(P) - chr3L 16610803 exon Su(P) - chr3L_11_16610001 chr3L_16610001 RAL-142 1477 chr3L 16616496 16616509 chr3L 16621839 16621870 297 4 5353 9.0 7.5 8.2 0.4 5374 chr3L 16616496 3` UTR Abl - chr3L 16619183 3` UTR Abl - chr3L 16621870 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-142 1478 chr3L 16616510 16616543 chr3L 16621838 16621888 297 15 5348 2.5 7.0 4.8 2.6 5378 chr3L 16616510 3` UTR Abl - chr3L 16619199 3` UTR Abl - chr3L 16621888 3` UTR Abl - chr3L_15_16615001 chr3L_16615001 RAL-142 1479 chr3L 16714381 16714396 chr3L 16714636 16714651 7 255 14.0 4.5 9.2 0.7 270 chr3L 16714381 intron Dab + chr3L 16714516 intron Dab + chr3L 16714651 intron Dab + chr3L_7_16710001 chr3L_16710001 RAL-142 1480 chr3L 16714399 16714439 chr3L 16714629 16714689 15 250 6.0 3.5 4.8 2.6 290 chr3L 16714399 intron Dab + chr3L 16714544 intron Dab + chr3L 16714689 intron Dab + chr3L_15_16710001 chr3L_16710001 RAL-142 1481 chr3L 16714809 16714869 chr3L 16714927 16714988 21 117 6.0 4.5 5.2 3.4 179 chr3L 16714809 intron Dab + chr3L 16714898 intron Dab + chr3L 16714988 intron Dab + chr3L_21_16710001 chr3L_16710001 RAL-142 1482 chr3L 16743920 16743973 chr3L 16744069 16744117 7 145 6.5 4.5 5.5 1.1 197 chr3L 16743920 intergenic not near genes chr3L 16744018 intergenic not near genes chr3L 16744117 intergenic not near genes chr3L_7_16740001 chr3L_16740001 RAL-142 1483 chr3L 16772482 16772513 chr3L 16772584 16772638 6 114 2.0 3.0 2.5 1.7 156 chr3L 16772482 intron Nrt + chr3L 16772560 intron Nrt + chr3L 16772638 intron Nrt + chr3L_6_16770001 chr3L_16770001 RAL-142 1484 chr3L 16786983 16786995 chr3L 16787079 16787106 5 103 0.5 2.5 1.5 2.0 123 chr3L 16786983 intergenic Int6 - chr3L 16787044 intergenic Int6 - chr3L 16787106 intergenic Int6 -,CG9674 - chr3L_5_16785001 chr3L_16785001 RAL-142 1485 chr3L 16808015 16808070 chr3L 16808118 16808184 5 107 2.0 0.0 1.0 2.5 169 chr3L 16808015 intron nudC + chr3L 16808100 intron nudC + chr3L 16808184 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-142 1486 chr3L 16818714 16818778 chr3L 16818825 16818829 13 102 2.5 2.5 2.5 3.7 115 chr3L 16818714 intron,intron nudC +,CG13024 - chr3L 16818772 intron,intron nudC +,CG13024 - chr3L 16818829 intron,intron nudC +,CG13024 - chr3L_13_16815001 chr3L_16815001 RAL-142 1487 chr3L 16826175 16826232 chr3L 16826491 16826547 9 315 3.0 3.0 3.0 2.2 372 chr3L 16826175 intron CG13024 - chr3L 16826361 intron CG13024 - chr3L 16826547 intron CG13024 - chr3L_9_16825001 chr3L_16825001 RAL-142 1488 chr3L 16844995 16845041 chr3L 16845138 16845189 12 140 1.5 9.0 5.2 1.9 194 chr3L 16844995 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845092 intergenic CG9669 -,CG9715 + chr3L 16845189 intergenic CG9715 +,CG9669 - chr3L_12_16845001 chr3L_16845001 RAL-142 1489 chr3L 16861004 16861052 chr3L 16861131 16861189 31 125 4.5 7.0 5.8 4.6 185 chr3L 16861004 intron,exon Rh4 -,CG13029 + chr3L 16861096 intron,intron Rh4 -,CG13029 + chr3L 16861189 intron,exon Rh4 -,CG13029 + chr3L_31_16860001 chr3L_16860001 RAL-142 1490 chr3L 16866179 16866227 chr3L 16866305 16866352 5 126 4.5 2.5 3.5 1.1 173 chr3L 16866179 intron Lmpt + chr3L 16866266 intron Lmpt + chr3L 16866352 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-142 1491 chr3L 16915340 16915381 chr3L 16915448 16915488 9 114 1.0 1.5 1.2 4.1 148 chr3L 16915340 intron Lmpt + chr3L 16915414 intron Lmpt + chr3L 16915488 intron Lmpt + chr3L_9_16915001 chr3L_16915001 RAL-142 1492 chr3L 16941367 16941431 chr3L 16941502 16941526 16 131 4.0 0.0 2.0 5.3 159 chr3L 16941367 intron Cpr73D - chr3L 16941446 intron Cpr73D - chr3L 16941526 intron Cpr73D - chr3L_16_16940001 chr3L_16940001 RAL-142 1493 chr3L 16945736 16945761 chr3L 16954882 16954926 roo 8 9157 4.0 2.5 3.2 1.9 9190 chr3L 16945736 exon Obp73a + chr3L 16950331 intergenic not near genes chr3L 16954926 5` UTR Nc73EF + chr3L_8_16950001 chr3L_16950001 RAL-142 1494 chr3L 16986608 16986652 chr3L 16986704 16986724 24 101 0.5 10.5 5.5 3.7 116 chr3L 16986608 intron Exn + chr3L 16986666 intron Exn + chr3L 16986724 intron Exn + chr3L_24_16985001 chr3L_16985001 RAL-142 1495 chr3L 17004358 17004423 chr3L 17004511 17004573 20 147 5.5 2.0 3.8 4.2 215 chr3L 17004358 intron CG3764 - chr3L 17004466 intron CG3764 - chr3L 17004573 intron CG3764 - chr3L_20_17000001 chr3L_17000001 RAL-142 1496 chr3L 17027155 17027186 chr3L 17027267 17027313 6 122 2.0 3.5 2.8 1.6 158 chr3L 17027155 intergenic Fit2 +,CG7730 + chr3L 17027234 intergenic Fit2 +,CG7730 + chr3L 17027313 intergenic Fit2 +,CG7730 + chr3L_6_17025001 chr3L_17025001 RAL-142 1497 chr3L 17034909 17034965 chr3L 17035132 17035162 G2 22 219 4.5 5.5 5.0 3.7 253 chr3L 17034909 intergenic not near genes chr3L 17035036 intergenic not near genes chr3L 17035162 intergenic not near genes chr3L_22_17035001 chr3L_17035001 RAL-142 1498 chr3L 17052555 17052613 chr3L 17052693 17052751 17 137 2.0 4.0 3.0 4.2 196 chr3L 17052555 intron rogdi + chr3L 17052653 intron rogdi + chr3L 17052751 exon rogdi + chr3L_17_17050001 chr3L_17050001 RAL-142 1499 chr3L 17084980 17085033 chr3L 17094164 17094200 roo 18 9180 5.5 5.5 5.5 2.8 9220 chr3L 17084980 intron Rbp6 - chr3L 17089590 intron Rbp6 - chr3L 17094200 intron Rbp6 - chr3L_18_17085001 chr3L_17085001 RAL-142 1500 chr3L 17149130 17149166 chr3L 17149246 17149249 6 110 9.0 0.0 4.5 1.1 119 chr3L 17149130 intron Rbp6 - chr3L 17149190 intron Rbp6 - chr3L 17149249 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-142 1501 chr3L 17367408 17367446 chr3L 17367537 17367575 8 127 1.0 1.0 1.0 4.0 167 chr3L 17367408 intergenic CR45688 +,Cad74A - chr3L 17367492 intergenic CR45688 +,Cad74A - chr3L 17367575 intergenic Cad74A -,CR45688 + chr3L_8_17365001 chr3L_17365001 RAL-142 1502 chr3L 17408885 17408925 chr3L 17408991 17409036 11 110 8.0 5.0 6.5 1.5 151 chr3L 17408885 intron blot - chr3L 17408960 intron blot - chr3L 17409036 intron blot - chr3L_11_17405001 chr3L_17405001 RAL-142 1503 chr3L 17510711 17510749 chr3L 17510830 17510834 10 108 11.0 10.0 10.5 0.9 123 chr3L 17510711 exon Oatp74D + chr3L 17510772 exon Oatp74D + chr3L 17510834 intron Oatp74D + chr3L_10_17510001 chr3L_17510001 RAL-142 1504 chr3L 17510750 17510766 chr3L 17510823 17510856 11 106 7.5 7.5 7.5 1.3 106 chr3L 17510750 exon Oatp74D + chr3L 17510803 intron Oatp74D + chr3L 17510856 intron Oatp74D + chr3L_11_17510001 chr3L_17510001 RAL-142 1505 chr3L 17516950 17516972 chr3L 17524543 17524564 412 4 7587 11.0 8.5 9.8 0.4 7614 chr3L 17516950 intron CG7564 + chr3L 17520757 intron CG7564 + chr3L 17524564 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-142 1506 chr3L 17577077 17577143 chr3L 17577187 17577202 17 96 8.0 7.5 7.8 1.9 125 chr3L 17577077 intron Eip74EF - chr3L 17577140 intron Eip74EF - chr3L 17577202 intron Eip74EF - chr3L_17_17575001 chr3L_17575001 RAL-142 1507 chr3L 17586934 17586999 chr3L 17587103 17587166 20 165 5.0 4.5 4.8 3.4 232 chr3L 17586934 intron Eip74EF - chr3L 17587050 intron Eip74EF - chr3L 17587166 intron Eip74EF - chr3L_20_17585001 chr3L_17585001 RAL-142 1508 chr3L 17594206 17594266 chr3L 17594322 17594382 36 112 7.0 9.0 8.0 4.0 176 chr3L 17594206 intron Eip74EF - chr3L 17594294 intron Eip74EF - chr3L 17594382 intron Eip74EF - chr3L_36_17590001 chr3L_17590001 RAL-142 1509 chr3L 17632689 17632729 chr3L 17632837 17632877 13 148 4.5 4.5 4.5 2.4 188 chr3L 17632689 intergenic CR44567 -,CR44566 + chr3L 17632783 intergenic CR44567 - chr3L 17632877 intergenic CR44567 - chr3L_13_17630001 chr3L_17630001 RAL-142 1510 chr3L 17645289 17645330 chr3L 17645401 17645442 12 110 6.0 7.0 6.5 1.6 153 chr3L 17645289 intergenic CG43085 -,Pep - chr3L 17645366 intergenic CG43085 -,Pep - chr3L 17645442 intergenic CG43085 -,Pep - chr3L_12_17645001 chr3L_17645001 RAL-142 1511 chr3L 17678870 17678890 chr3L 17678989 17678994 11 117 11.5 0.5 6.0 1.6 124 chr3L 17678870 intron CG34251 + chr3L 17678932 intron CG34251 + chr3L 17678994 intron CG34251 + chr3L_11_17675001 chr3L_17675001 RAL-142 1512 chr3L 17789810 17789871 chr3L 17789921 17789977 15 109 4.5 5.5 5.0 2.5 167 chr3L 17789810 intergenic not near genes chr3L 17789894 intergenic not near genes chr3L 17789977 intergenic not near genes chr3L_15_17785001 chr3L_17785001 RAL-142 1513 chr3L 17790592 17790632 chr3L 17790892 17790932 14 295 3.5 7.0 5.2 2.3 340 chr3L 17790592 intergenic CG42815 - chr3L 17790762 intergenic CG42815 - chr3L 17790932 intergenic CG42815 - chr3L_14_17790001 chr3L_17790001 RAL-142 1514 chr3L 17799782 17799838 chr3L 17801604 17801660 S-element 26 1819 7.5 10.0 8.8 2.7 1878 chr3L 17799782 intron NUCB1 - chr3L 17800721 intron NUCB1 - chr3L 17801660 intron NUCB1 - chr3L_26_17800001 chr3L_17800001 RAL-142 1515 chr3L 17834304 17834350 chr3L 17834494 17834549 21 192 0.0 9.0 4.5 3.8 245 chr3L 17834304 intron Grd + chr3L 17834426 intron Grd + chr3L 17834549 intron Grd + chr3L_21_17830001 chr3L_17830001 RAL-142 1516 chr3L 17837615 17837656 chr3L 17837719 17837769 16 110 2.0 7.5 4.8 2.8 154 chr3L 17837615 exon Grd + chr3L 17837692 intron Grd + chr3L 17837769 exon Grd + chr3L_16_17835001 chr3L_17835001 RAL-142 1517 chr3L 17918376 17918402 chr3L 17921173 17921241 opus 4 2826 2.5 3.0 2.8 1.1 2865 chr3L 17918376 intergenic not near genes chr3L 17919808 intergenic not near genes chr3L 17921241 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-142 1518 chr3L 18006190 18006245 chr3L 18006350 18006367 4 152 1.5 1.5 1.5 1.6 177 chr3L 18006190 intron Eip75B - chr3L 18006278 intron Eip75B - chr3L 18006367 intron Eip75B - chr3L_4_18005001 chr3L_18005001 RAL-142 1519 chr3L 18047676 18047734 chr3L 18056768 18056801 roo 13 9084 2.5 5.0 3.8 2.7 9125 chr3L 18047676 intron Eip75B - chr3L 18052238 intron Eip75B - chr3L 18056801 intron Eip75B - chr3L_13_18050001 chr3L_18050001 RAL-142 1520 chr3L 18064032 18064077 chr3L 18064153 18064197 10 120 2.0 5.5 3.8 2.1 165 chr3L 18064032 intron Eip75B - chr3L 18064114 intron Eip75B - chr3L 18064197 intron Eip75B - chr3L_10_18060001 chr3L_18060001 RAL-142 1521 chr3L 18080998 18081007 chr3L 18081115 18081124 4 117 3.0 5.0 4.0 0.8 126 chr3L 18080998 intergenic CR43253 - chr3L 18081061 intergenic CR43253 - chr3L 18081124 3` UTR CR43253 - chr3L_4_18080001 chr3L_18080001 RAL-142 1522 chr3L 18133022 18133043 chr3L 18133143 18133168 6 124 2.0 1.0 1.5 2.4 146 chr3L 18133022 intergenic Cyp312a1 - chr3L 18133095 intergenic Cyp312a1 - chr3L 18133168 intergenic Cyp312a1 - chr3L_6_18130001 chr3L_18130001 RAL-142 1523 chr3L 18172661 18172704 chr3L 18172765 18172815 30 106 12.5 6.5 9.5 2.9 154 chr3L 18172661 intron W - chr3L 18172738 intron W - chr3L 18172815 intron W - chr3L_30_18170001 chr3L_18170001 RAL-142 1524 chr3L 18182640 18182689 chr3L 18183257 18183278 5 605 8.5 7.5 8.0 0.6 638 chr3L 18182640 intron W - chr3L 18182959 intron W - chr3L 18183278 intron W - chr3L_5_18180001 chr3L_18180001 RAL-142 1525 chr3L 18207888 18207928 chr3L 18208008 18208060 4 122 0.5 0.0 0.2 3.3 172 chr3L 18207888 intergenic not near genes chr3L 18207974 intergenic not near genes chr3L 18208060 intergenic not near genes chr3L_4_18205001 chr3L_18205001 RAL-142 1526 chr3L 18223157 18223189 chr3L 18223266 18223319 5 123 1.0 0.0 0.5 3.3 162 chr3L 18223157 intergenic not near genes chr3L 18223238 intergenic not near genes chr3L 18223319 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-142 1527 chr3L 18258836 18258874 chr3L 18258994 18259035 7 157 1.5 0.5 1.0 3.5 199 chr3L 18258836 intergenic not near genes chr3L 18258936 intergenic not near genes chr3L 18259035 intergenic not near genes chr3L_7_18255001 chr3L_18255001 RAL-142 1528 chr3L 18267853 18267984 chr3L 18267944 18268075 4 96 0.0 0.0 0.0 4.0 222 chr3L 18267853 intergenic not near genes chr3L 18267964 intergenic not near genes chr3L 18268075 intergenic not near genes chr3L_4_18265001 chr3L_18265001 RAL-142 1529 chr3L 18383089 18383129 chr3L 18383193 18383245 4 112 0.5 0.5 0.5 2.7 156 chr3L 18383089 intergenic not near genes chr3L 18383167 intergenic not near genes chr3L 18383245 intergenic not near genes chr3L_4_18380001 chr3L_18380001 RAL-142 1530 chr3L 18406100 18406117 chr3L 18406211 18406228 5 111 4.5 6.5 5.5 0.8 128 chr3L 18406100 intergenic not near genes chr3L 18406164 intergenic not near genes chr3L 18406228 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-142 1531 chr3L 18408701 18408759 chr3L 18408822 18408880 8 116 2.5 2.5 2.5 2.3 179 chr3L 18408701 intergenic not near genes chr3L 18408790 intergenic not near genes chr3L 18408880 intergenic not near genes chr3L_8_18405001 chr3L_18405001 RAL-142 1532 chr3L 9013689 9013695 chr3L 18417066 18417066 9 9403374 37.5 4.5 21.0 0.4 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_9_13715001 chr3L_13715001 RAL-142 1533 chr3L 18456244 18456285 chr3L 18456367 18456392 4 118 0.5 1.0 0.8 2.2 148 chr3L 18456244 intergenic CR44670 - chr3L 18456318 intergenic CR44670 - chr3L 18456392 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-142 1534 chr3L 18506112 18506149 chr3L 18509606 18509628 F-element 8 3493 2.5 3.5 3.0 2.0 3516 chr3L 18506112 intergenic not near genes chr3L 18507870 intergenic not near genes chr3L 18509628 intergenic not near genes chr3L_8_18505001 chr3L_18505001 RAL-142 1535 chr3L 18528602 18528654 chr3L 18537794 18537844 roo 14 9192 4.5 5.0 4.8 2.4 9242 chr3L 18528602 intergenic not near genes chr3L 18533223 intergenic not near genes chr3L 18537844 intergenic not near genes chr3L_14_18530001 chr3L_18530001 RAL-142 1536 chr3L 18585524 18585553 chr3L 18585624 18585646 4 103 5.0 0.0 2.5 1.1 122 chr3L 18585524 intergenic not near genes chr3L 18585585 intergenic not near genes chr3L 18585646 intergenic not near genes chr3L_4_18585001 chr3L_18585001 RAL-142 1537 chr3L 18590268 18590288 chr3L 18590353 18590374 9 93 5.0 9.5 7.2 1.1 106 chr3L 18590268 intergenic CG7271 + chr3L 18590321 intergenic CG7271 + chr3L 18590374 intergenic CG7271 + chr3L_9_18590001 chr3L_18590001 RAL-142 1538 chr3L 18593922 18593977 chr3L 18595935 18595958 Doc 13 2009 5.0 0.5 2.8 3.4 2036 chr3L 18593922 intergenic term - chr3L 18594940 intergenic not near genes chr3L 18595958 intergenic CR45389 + chr3L_13_18590001 chr3L_18590001 RAL-142 1539 chr3L 18656173 18656216 chr3L 18656276 18656290 6 100 1.5 4.5 3.0 1.5 117 chr3L 18656173 intron MYPT-75D + chr3L 18656232 intron MYPT-75D + chr3L 18656290 intron MYPT-75D + chr3L_6_18655001 chr3L_18655001 RAL-142 1540 chr3L 18665179 18665244 chr3L 18665299 18665365 22 119 8.5 0.0 4.2 4.2 186 chr3L 18665179 intron MYPT-75D + chr3L 18665272 intron MYPT-75D + chr3L 18665365 intron MYPT-75D + chr3L_22_18665001 chr3L_18665001 RAL-142 1541 chr3L 18677879 18677919 chr3L 18677990 18678041 9 117 6.5 7.0 6.8 1.2 162 chr3L 18677879 intergenic GNBP1 + chr3L 18677960 intergenic GNBP1 + chr3L 18678041 intergenic GNBP1 + chr3L_9_18675001 chr3L_18675001 RAL-142 1542 chr3L 18682640 18682664 chr3L 18682846 18682870 7 194 25.5 36.5 31.0 0.2 230 chr3L 18682640 exon CG32202 + chr3L 18682755 exon CG32202 + chr3L 18682870 intergenic CG32202 +,Chmp1 - chr3L_7_18680001 chr3L_18680001 RAL-142 1543 chr3L 18721766 18721786 chr3L 18721885 18721912 4 120 3.5 6.5 5.0 0.7 146 chr3L 18721766 intergenic CG12477 - chr3L 18721839 intergenic CG12477 - chr3L 18721912 3` UTR CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-142 1544 chr3L 18753525 18753561 chr3L 18753630 18753678 15 114 2.5 4.0 3.2 3.6 153 chr3L 18753525 intron ftz-f1 - chr3L 18753602 intron ftz-f1 - chr3L 18753678 intron ftz-f1 - chr3L_15_18750001 chr3L_18750001 RAL-142 1545 chr3L 18772378 18772436 chr3L 18781089 18781129 roo 14 8709 7.0 5.0 6.0 2.0 8751 chr3L 18772378 intron ftz-f1 - chr3L 18776754 intron ftz-f1 - chr3L 18781129 intron ftz-f1 - chr3L_14_18775001 chr3L_18775001 RAL-142 1546 chr3L 18784369 18784397 chr3L 18784482 18784521 10 121 2.5 3.0 2.8 2.6 152 chr3L 18784369 intron ftz-f1 - chr3L 18784445 intron ftz-f1 - chr3L 18784521 intron ftz-f1 - chr3L_10_18780001 chr3L_18780001 RAL-142 1547 chr3L 18797307 18797332 chr3L 18797395 18797444 10 107 6.5 6.5 6.5 1.3 137 chr3L 18797307 intron ftz-f1 - chr3L 18797376 intron ftz-f1 - chr3L 18797444 intron ftz-f1 - chr3L_10_18795001 chr3L_18795001 RAL-142 1548 chr3L 18833784 18833805 chr3L 18834950 18835003 1360 4 1187 3.0 4.0 3.5 0.9 1219 chr3L 18833784 intron Indy - chr3L 18834394 intron Indy - chr3L 18835003 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-142 1549 chr3L 18843844 18843884 chr3L 18843967 18844017 5 120 3.5 3.0 3.2 1.2 173 chr3L 18843844 intron Indy - chr3L 18843930 intron Indy - chr3L 18844017 intron Indy - chr3L_5_18840001 chr3L_18840001 RAL-142 1550 chr3L 18888402 18888463 chr3L 18888519 18888580 8 110 1.0 1.5 1.2 3.6 178 chr3L 18888402 intron CG3961 - chr3L 18888491 intron CG3961 - chr3L 18888580 intron CG3961 - chr3L_8_18885001 chr3L_18885001 RAL-142 1551 chr3L 18895668 18895714 chr3L 18895791 18895837 21 121 4.5 9.0 6.8 2.7 169 chr3L 18895668 intron CG3902 - chr3L 18895752 intron CG3902 - chr3L 18895837 intron CG3902 - chr3L_21_18895001 chr3L_18895001 RAL-142 1552 chr3L 18958566 18958616 chr3L 18958677 18958727 9 107 1.5 1.5 1.5 3.6 161 chr3L 18958566 intergenic not near genes chr3L 18958646 intergenic not near genes chr3L 18958727 intergenic not near genes chr3L_9_18955001 chr3L_18955001 RAL-142 1553 chr3L 19008858 19008873 chr3L 19009193 19009205 jockey 6 343 2.5 7.5 5.0 1.0 347 chr3L 19008858 intron nkd - chr3L 19009032 intron nkd - chr3L 19009205 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-142 1554 chr3L 19089840 19089900 chr3L 19089965 19090020 10 111 1.0 2.0 1.5 4.0 180 chr3L 19089840 intergenic not near genes chr3L 19089930 intergenic not near genes chr3L 19090020 intergenic not near genes chr3L_10_19085001 chr3L_19085001 RAL-142 1555 chr3L 19117044 19117055 chr3L 19124491 19124527 mdg1 7 7461 12.0 7.0 9.5 0.7 7483 chr3L 19117044 intron CG14082 - chr3L 19120786 intron CG14082 - chr3L 19124527 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-142 1556 chr3L 19117058 19117076 chr3L 19124490 19124548 mdg1 19 7461 7.0 7.0 7.0 2.4 7490 chr3L 19117058 intron CG14082 - chr3L 19120803 intron CG14082 - chr3L 19124548 intron CG14082 - chr3L_19_19120001 chr3L_19120001 RAL-142 1557 chr3L 19135578 19135633 chr3L 19135718 19135773 13 139 3.5 4.0 3.8 2.7 195 chr3L 19135578 intron CG14082 - chr3L 19135676 intron CG14082 - chr3L 19135773 intron CG14082 - chr3L_13_19135001 chr3L_19135001 RAL-142 1558 chr3L 19152063 19152089 chr3L 19152163 19152173 5 100 2.5 5.0 3.8 1.0 110 chr3L 19152063 intron fz2 - chr3L 19152118 intron fz2 - chr3L 19152173 intron fz2 - chr3L_5_19150001 chr3L_19150001 RAL-142 1559 chr3L 19186915 19186974 chr3L 19187046 19187105 9 129 2.0 2.5 2.2 2.8 190 chr3L 19186915 intron fz2 - chr3L 19187010 intron fz2 - chr3L 19187105 intron fz2 - chr3L_9_19185001 chr3L_19185001 RAL-142 1560 chr3L 19223321 19223364 chr3L 19223442 19223502 5 124 2.0 0.5 1.2 2.3 181 chr3L 19223321 intron fz2 - chr3L 19223412 intron fz2 - chr3L 19223502 intron fz2 - chr3L_5_19220001 chr3L_19220001 RAL-142 1561 chr3L 19244078 19244130 chr3L 19244191 19244242 9 102 1.5 2.0 1.8 3.2 164 chr3L 19244078 intergenic not near genes chr3L 19244160 intergenic not near genes chr3L 19244242 intergenic not near genes chr3L_9_19240001 chr3L_19240001 RAL-142 1562 chr3L 19319611 19319645 chr3L 19319716 19319741 10 107 2.0 5.0 3.5 2.2 130 chr3L 19319611 intron pip - chr3L 19319676 intron pip - chr3L 19319741 intron pip - chr3L_10_19315001 chr3L_19315001 RAL-142 1563 chr3L 19410340 19410394 chr3L 19410451 19410503 7 105 1.5 3.0 2.2 2.2 163 chr3L 19410340 intron CG32206 - chr3L 19410422 intron CG32206 - chr3L 19410503 intron CG32206 - chr3L_7_19410001 chr3L_19410001 RAL-142 1564 chr3L 19527897 19527917 chr3L 19528010 19528016 8 110 20.0 9.0 14.5 0.5 119 chr3L 19527897 intergenic not near genes chr3L 19527956 intergenic not near genes chr3L 19528016 intergenic not near genes chr3L_8_19525001 chr3L_19525001 RAL-142 1565 chr3L 19527918 19527955 chr3L 19528001 19528048 30 110 9.0 10.0 9.5 2.9 130 chr3L 19527918 intergenic not near genes chr3L 19527983 intergenic not near genes chr3L 19528048 intergenic not near genes chr3L_30_19525001 chr3L_19525001 RAL-142 1566 chr3L 19544205 19544219 chr3L 19544316 19544330 5 111 13.0 4.5 8.8 0.5 125 chr3L 19544205 intergenic CG9279 -,l(3)76BDr - chr3L 19544268 intergenic l(3)76BDr -,CG9279 - chr3L 19544330 intergenic l(3)76BDr -,CG9279 - chr3L_5_19540001 chr3L_19540001 RAL-142 1567 chr3L 19544222 19544259 chr3L 19544315 19544370 11 105 5.5 5.0 5.2 1.8 148 chr3L 19544222 intergenic CG9279 -,l(3)76BDr - chr3L 19544296 intergenic l(3)76BDr -,CG9279 - chr3L 19544370 3` UTR l(3)76BDr - chr3L_11_19540001 chr3L_19540001 RAL-142 1568 chr3L 19703818 19703843 chr3L 19704007 19704032 7 188 13.0 6.5 9.8 0.6 214 chr3L 19703818 intron serp - chr3L 19703925 intron serp - chr3L 19704032 intron serp - chr3L_7_19700001 chr3L_19700001 RAL-142 1569 chr3L 19703848 19703877 chr3L 19704002 19704066 9 175 7.5 6.0 6.8 1.2 218 chr3L 19703848 intron serp - chr3L 19703957 intron serp - chr3L 19704066 intron serp - chr3L_9_19700001 chr3L_19700001 RAL-142 1570 chr3L 19820265 19820319 chr3L 19827849 19827903 412 24 7582 5.5 6.0 5.8 3.5 7638 chr3L 19820265 intron Deaf1 + chr3L 19824084 intron Deaf1 + chr3L 19827903 intron Deaf1 + chr3L_24_19820001 chr3L_19820001 RAL-142 1571 chr3L 19848475 19848530 chr3L 19857700 19857740 roo 14 9217 5.0 6.0 5.5 2.2 9265 chr3L 19848475 intron Papss + chr3L 19853108 intron Papss + chr3L 19857740 intron Papss + chr3L_14_19850001 chr3L_19850001 RAL-142 1572 chr3L 19861790 19861806 chr3L 19863613 19863629 S-element 4 1820 6.0 2.5 4.2 0.8 1839 chr3L 19861790 5` UTR CR45433 + chr3L 19862710 intergenic not near genes chr3L 19863629 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-142 1573 chr3L 19861809 19861850 chr3L 19863609 19863647 S-element 17 1813 1.0 2.0 1.5 6.8 1838 chr3L 19861809 5` UTR CR45433 + chr3L 19862728 intergenic not near genes chr3L 19863647 intergenic not near genes chr3L_17_19860001 chr3L_19860001 RAL-142 1574 chr3L 19933522 19933562 chr3L 19934379 19934419 5 856 1.0 4.0 2.5 1.4 897 chr3L 19933522 intergenic CR45678 + chr3L 19933970 5` UTR CR45678 + chr3L 19934419 intergenic CR45678 + chr3L_5_19930001 chr3L_19930001 RAL-142 1575 chr3L 19961254 19961306 chr3L 19961493 19961547 13 237 3.0 4.0 3.5 2.9 293 chr3L 19961254 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961547 intron Ac76E + chr3L_13_19960001 chr3L_19960001 RAL-142 1576 chr3L 20057533 20057579 chr3L 20057681 20057727 7 146 1.0 1.5 1.2 3.2 194 chr3L 20057533 intergenic not near genes chr3L 20057630 intergenic not near genes chr3L 20057727 intergenic not near genes chr3L_7_20055001 chr3L_20055001 RAL-142 1577 chr3L 20081713 20081770 chr3L 20081827 20081858 10 112 2.5 3.0 2.8 2.6 145 chr3L 20081713 intron sNPF-R - chr3L 20081786 intron sNPF-R - chr3L 20081858 intron sNPF-R - chr3L_10_20080001 chr3L_20080001 RAL-142 1578 chr3L 20113630 20113683 chr3L 20122922 20122975 roo 22 9291 5.0 6.0 5.5 3.4 9345 chr3L 20113630 intergenic not near genes chr3L 20118302 intergenic not near genes chr3L 20122975 intergenic not near genes chr3L_22_20115001 chr3L_20115001 RAL-142 1579 chr3L 20143063 20143114 chr3L 20143169 20143219 8 110 4.0 3.5 3.8 1.7 156 chr3L 20143063 intergenic not near genes chr3L 20143141 intergenic not near genes chr3L 20143219 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-142 1580 chr3L 20150695 20150756 chr3L 20150861 20150919 31 160 5.0 11.0 8.0 3.4 224 chr3L 20150695 3` UTR CG42674 - chr3L 20150807 3` UTR CG42674 - chr3L 20150919 3` UTR CG42674 - chr3L_31_20150001 chr3L_20150001 RAL-142 1581 chr3L 20187436 20187483 chr3L 20187541 20187597 9 108 22.0 19.5 20.8 0.4 161 chr3L 20187436 intron CG42674 - chr3L 20187516 intron CG42674 - chr3L 20187597 intron CG42674 - chr3L_9_20185001 chr3L_20185001 RAL-142 1582 chr3L 20257297 20257362 chr3L 20258452 20258509 pogo 18 1149 4.5 5.0 4.8 3.1 1212 chr3L 20257297 intron rdgC + chr3L 20257903 intron rdgC + chr3L 20258509 intron rdgC + chr3L_18_20255001 chr3L_20255001 RAL-142 1583 chr3L 20321104 20321124 chr3L 20342875 20342910 17.6 4 21780 9.0 8.5 8.8 0.4 21806 chr3L 20321104 exon Spn77Bb + chr3L 20332007 intergenic not near genes chr3L 20342910 exon Spn77Bc + chr3L_4_20330001 chr3L_20330001 RAL-142 1584 chr3L 20386902 20386965 chr3L 20387039 20387092 20 133 6.0 7.0 6.5 2.7 190 chr3L 20386902 intron fbl + chr3L 20386997 intron fbl + chr3L 20387092 intron fbl + chr3L_20_20385001 chr3L_20385001 RAL-142 1585 chr3L 20476722 20476781 chr3L 20484356 20484413 springer 15 7631 9.0 7.0 8.0 1.7 7691 chr3L 20476722 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484413 3` UTR ZnT77C - chr3L_15_20480001 chr3L_20480001 RAL-142 1586 chr3L 20525229 20525230 chr3L 22908066 22908067 6 2382837 19.5 20.5 20.0 0.3 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_6_21715001 chr3L_21715001 RAL-142 1587 chr3L 20699903 20699926 chr3L 20699986 20700019 4 90 2.0 0.5 1.2 1.8 116 chr3L 20699903 intergenic not near genes chr3L 20699961 intergenic not near genes chr3L 20700019 intergenic not near genes chr3L_4_20695001 chr3L_20695001 RAL-142 1588 chr3L 20710737 20710758 chr3L 20710849 20710857 4 109 2.5 2.5 2.5 1.1 120 chr3L 20710737 intergenic not near genes chr3L 20710797 intergenic not near genes chr3L 20710857 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-142 1589 chr3L 20710765 20710776 chr3L 20710837 20710878 4 95 1.5 2.5 2.0 1.3 113 chr3L 20710765 intergenic not near genes chr3L 20710822 intergenic not near genes chr3L 20710878 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-142 1590 chr3L 20739457 20739488 chr3L 20739607 20739638 5 149 7.5 4.0 5.8 0.7 181 chr3L 20739457 intron CG13252 + chr3L 20739548 intron CG13252 + chr3L 20739638 intron CG13252 + chr3L_5_20735001 chr3L_20735001 RAL-142 1591 chr3L 20781346 20781411 chr3L 20781467 20781514 24 111 8.0 4.0 6.0 3.4 168 chr3L 20781346 3` UTR CG11399 - chr3L 20781430 3` UTR CG11399 - chr3L 20781514 3` UTR CG11399 - chr3L_24_20780001 chr3L_20780001 RAL-142 1592 chr3L 20821254 20821303 chr3L 20824895 20824928 NOF 10 3640 7.5 5.5 6.5 1.3 3674 chr3L 20821254 intron Pka-R1 + chr3L 20823091 intron Pka-R1 + chr3L 20824928 intron Pka-R1 + chr3L_10_20820001 chr3L_20820001 RAL-142 1593 chr3L 20831448 20831488 chr3L 20831586 20831608 15 137 11.0 7.5 9.2 1.5 160 chr3L 20831448 intron Pka-R1 + chr3L 20831528 intron Pka-R1 + chr3L 20831608 intron Pka-R1 + chr3L_15_20830001 chr3L_20830001 RAL-142 1594 chr3L 20849245 20849301 chr3L 20849359 20849415 11 113 5.0 6.5 5.8 1.6 170 chr3L 20849245 intron CG32432 - chr3L 20849330 intron CG32432 - chr3L 20849415 intron CG32432 - chr3L_11_20845001 chr3L_20845001 RAL-142 1595 chr3L 20875060 20875069 chr3L 20875145 20875180 6 104 0.5 2.0 1.2 2.7 120 chr3L 20875060 intron CG32432 - chr3L 20875120 intron CG32432 - chr3L 20875180 intron CG32432 - chr3L_6_20875001 chr3L_20875001 RAL-142 1596 chr3L 20936152 20936152 chr3L 23941244 23941244 4 3005092 4.5 2.5 3.5 0.9 3005092 chr3L 20936152 intron fng - chr3L 22438698 intergenic not near genes chr3L 23941244 intron CG40470 - chr3L_4_22435001 chr3L_22435001 RAL-142 1597 chr3L 21014916 21014940 chr3L 21023401 21023415 Tirant 8 8496 4.0 4.0 4.0 1.6 8499 chr3L 21014916 intron skd - chr3L 21019166 intron skd - chr3L 21023415 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-142 1598 chr3L 21067916 21067977 chr3L 21068031 21068067 17 99 6.0 4.5 5.2 2.7 151 chr3L 21067916 intron siz + chr3L 21067992 intron siz + chr3L 21068067 intron siz + chr3L_17_21065001 chr3L_21065001 RAL-142 1599 chr3L 21082181 21082240 chr3L 21082289 21082332 11 103 2.0 5.5 3.8 2.3 151 chr3L 21082181 intron ko - chr3L 21082256 intron ko - chr3L 21082332 intron ko - chr3L_11_21080001 chr3L_21080001 RAL-142 1600 chr3L 21130539 21130591 chr3L 21130768 21130820 20 224 3.0 4.0 3.5 4.4 281 chr3L 21130539 intron ko - chr3L 21130680 intron ko - chr3L 21130820 5` UTR ko - chr3L_20_21130001 chr3L_21130001 RAL-142 1601 chr3L 21151839 21151883 chr3L 21156952 21157002 flea 6 5111 4.5 2.0 3.2 1.4 5163 chr3L 21151839 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21157002 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-142 1602 chr3L 21306116 21306165 chr3L 21315310 21315354 roo 18 9190 3.0 4.0 3.5 4.0 9238 chr3L 21306116 3` UTR CG7632 + chr3L 21310735 intron Pc - chr3L 21315354 3` UTR Pc - chr3L_18_21310001 chr3L_21310001 RAL-142 1603 chr3L 21372692 21372704 chr3L 21379234 21379247 McClintock 6 6543 6.0 2.5 4.2 1.2 6555 chr3L 21372692 intergenic not near genes chr3L 21375970 intergenic not near genes chr3L 21379247 intergenic not near genes chr3L_6_21375001 chr3L_21375001 RAL-142 1604 chr3L 21415105 21415159 chr3L 21415223 21415277 8 110 2.5 3.5 3.0 2.0 172 chr3L 21415105 intron rgn + chr3L 21415191 intron rgn + chr3L 21415277 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-142 1605 chr3L 21498825 21498870 chr3L 21500478 21500503 1360 13 1646 4.0 8.0 6.0 1.9 1678 chr3L 21498825 5` UTR,intron CR43933 +,Glg1 - chr3L 21499664 intron Glg1 - chr3L 21500503 intron Glg1 - chr3L_13_21495001 chr3L_21495001 RAL-142 1606 chr3L 21769048 21769083 chr3L 21769142 21769205 5 116 2.0 0.5 1.2 2.3 157 chr3L 21769048 intron,intron Syn1 -,CG42689 + chr3L 21769126 intron,intron Syn1 -,CG42689 + chr3L 21769205 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-142 1607 chr3L 21776642 21776695 chr3L 21776760 21776811 7 117 2.5 3.5 3.0 1.8 169 chr3L 21776642 intron,intron CG42689 +,CG42552 + chr3L 21776726 intron,intron CG42689 +,CG42552 + chr3L 21776811 intron,intron CG42689 +,CG42552 + chr3L_7_21775001 chr3L_21775001 RAL-142 1608 chr3L 21836695 21836758 chr3L 21836816 21836879 32 116 6.0 5.0 5.5 4.9 184 chr3L 21836695 3` UTR P5CDh1 - chr3L 21836787 3` UTR P5CDh1 - chr3L 21836879 3` UTR P5CDh1 - chr3L_32_21835001 chr3L_21835001 RAL-142 1609 chr3L 21849466 21849491 chr3L 21849583 21849592 8 115 15.5 5.0 10.2 0.7 126 chr3L 21849466 intron mub + chr3L 21849529 intron mub + chr3L 21849592 intron mub + chr3L_8_21845001 chr3L_21845001 RAL-142 1610 chr3L 21849495 21849530 chr3L 21849582 21849647 18 114 9.5 5.0 7.2 2.2 152 chr3L 21849495 intron mub + chr3L 21849571 intron mub + chr3L 21849647 intron mub + chr3L_18_21845001 chr3L_21845001 RAL-142 1611 chr3L 21852261 21852278 chr3L 21852348 21852394 5 101 4.0 3.0 3.5 1.1 133 chr3L 21852261 intron mub + chr3L 21852328 intron mub + chr3L 21852394 intron mub + chr3L_5_21850001 chr3L_21850001 RAL-142 1612 chr3L 21874984 21875027 chr3L 21875167 21875219 19 191 4.0 4.0 4.0 3.8 235 chr3L 21874984 intron mub + chr3L 21875102 intron mub + chr3L 21875219 intron mub + chr3L_19_21875001 chr3L_21875001 RAL-142 1613 chr3L 21900992 21901038 chr3L 21901120 21901166 7 120 1.5 4.5 3.0 1.8 174 chr3L 21900992 intron mub + chr3L 21901079 intron mub + chr3L 21901166 intron mub + chr3L_7_21900001 chr3L_21900001 RAL-142 1614 chr3L 21909291 21909321 chr3L 21909394 21909420 5 99 4.5 1.0 2.8 1.3 129 chr3L 21909291 intron mub + chr3L 21909356 intron mub + chr3L 21909420 intron mub + chr3L_5_21905001 chr3L_21905001 RAL-142 1615 chr3L 21952439 21952474 chr3L 21953194 21953250 transib1 5 767 3.5 2.0 2.8 1.3 811 chr3L 21952439 intergenic not near genes chr3L 21952844 intergenic not near genes chr3L 21953250 intergenic not near genes chr3L_5_21950001 chr3L_21950001 RAL-142 1616 chr3L 22016364 22016401 chr3L 22016483 22016524 9 124 6.0 2.0 4.0 1.8 160 chr3L 22016364 intergenic not near genes chr3L 22016444 intergenic not near genes chr3L 22016524 intergenic not near genes chr3L_9_22015001 chr3L_22015001 RAL-142 1617 chr3L 22033671 22033723 chr3L 22033775 22033836 16 110 9.5 3.0 6.2 2.2 165 chr3L 22033671 intergenic not near genes chr3L 22033754 intergenic not near genes chr3L 22033836 intergenic not near genes chr3L_16_22030001 chr3L_22030001 RAL-142 1618 chr3L 22046150 22046205 chr3L 22046288 22046343 6 138 3.5 2.5 3.0 1.5 193 chr3L 22046150 intron Oct-TyrR + chr3L 22046246 intron Oct-TyrR + chr3L 22046343 intron Oct-TyrR + chr3L_6_22045001 chr3L_22045001 RAL-142 1619 chr3L 22099659 22099668 chr3L 22105863 22105889 3S18 6 6216 15.5 6.5 11.0 0.5 6230 chr3L 22099659 intergenic not near genes chr3L 22102774 intergenic not near genes chr3L 22105889 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-142 1620 chr3L 22099671 22099705 chr3L 22105862 22105910 3S18 22 6206 7.0 6.5 6.8 2.8 6239 chr3L 22099671 intergenic not near genes chr3L 22102790 intergenic not near genes chr3L 22105910 intergenic not near genes chr3L_22_22100001 chr3L_22100001 RAL-142 1621 chr3L 22124922 22124978 chr3L 22125109 22125143 8 183 4.0 8.5 6.2 1.1 221 chr3L 22124922 intergenic not near genes chr3L 22125032 intergenic not near genes chr3L 22125143 intergenic not near genes chr3L_8_22125001 chr3L_22125001 RAL-142 1622 chr3L 22130468 22130521 chr3L 22130649 22130702 20 177 5.0 4.5 4.8 3.4 234 chr3L 22130468 intergenic not near genes chr3L 22130585 intergenic not near genes chr3L 22130702 intergenic not near genes chr3L_20_22130001 chr3L_22130001 RAL-142 1623 chr3L 22170037 22170058 chr3L 22170149 22170157 4 112 2.5 0.5 1.5 1.6 120 chr3L 22170037 intron olf413 + chr3L 22170097 intron olf413 + chr3L 22170157 intron olf413 + chr3L_4_22170001 chr3L_22170001 RAL-142 1624 chr3L 22267619 22267660 chr3L 22267717 22267759 22 103 9.0 7.5 8.2 2.4 140 chr3L 22267619 5` UTR Csp + chr3L 22267689 5` UTR Csp + chr3L 22267759 exon Csp + chr3L_22_22265001 chr3L_22265001 RAL-142 1625 chr3L 22361909 22361935 chr3L 22362021 22362047 4 112 5.5 1.5 3.5 0.9 138 chr3L 22361909 intron Ten-m - chr3L 22361978 intron Ten-m - chr3L 22362047 intron Ten-m - chr3L_4_22360001 chr3L_22360001 RAL-142 1626 chr3L 22395591 22395624 chr3L 22395683 22395742 8 101 2.5 7.0 4.8 1.4 151 chr3L 22395591 intron Ten-m - chr3L 22395666 intron Ten-m - chr3L 22395742 intron Ten-m - chr3L_8_22395001 chr3L_22395001 RAL-142 1627 chr3L 22522664 22522728 chr3L 22522776 22522840 30 108 5.5 8.0 6.8 3.8 176 chr3L 22522664 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522840 intergenic not near genes chr3L_30_22520001 chr3L_22520001 RAL-142 1628 chr3L 22555749 22555786 chr3L 22563243 22563267 blood 10 7488 3.5 3.0 3.2 2.4 7518 chr3L 22555749 intergenic not near genes chr3L 22559508 intergenic not near genes chr3L 22563267 intergenic not near genes chr3L_10_22555001 chr3L_22555001 RAL-142 1629 chr3L 22555787 22555798 chr3L 22563242 22563243 blood 4 7456 2.5 3.0 2.8 1.1 7456 chr3L 22555787 intergenic not near genes chr3L 22559515 intergenic not near genes chr3L 22563243 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-142 1630 chr3L 22577613 22577644 chr3L 22582404 22582452 Doc 10 4799 3.0 5.0 4.0 2.0 4839 chr3L 22577613 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582452 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-142 1631 chr3L 22587182 22587196 chr3L 22587312 22587328 4 130 8.5 4.5 6.5 0.5 146 chr3L 22587182 intron CG14459 - chr3L 22587255 intron CG14459 - chr3L 22587328 intron CG14459 - chr3L_4_22585001 chr3L_22585001 RAL-142 1632 chr3L 22587201 22587245 chr3L 22587310 22587366 14 126 3.0 4.0 3.5 3.1 165 chr3L 22587201 intron CG14459 - chr3L 22587284 intron CG14459 - chr3L 22587366 intron CG14459 - chr3L_14_22585001 chr3L_22585001 RAL-142 1633 chr3L 22617171 22617218 chr3L 22624640 22624700 blood 18 7473 7.5 8.5 8.0 2.0 7529 chr3L 22617171 intron CG14459 - chr3L 22620936 intron CG14459 - chr3L 22624700 intron CG14459 - chr3L_18_22620001 chr3L_22620001 RAL-142 1634 chr3L 22659024 22659077 chr3L 22659137 22659190 6 111 5.0 9.5 7.2 0.7 166 chr3L 22659024 intergenic not near genes chr3L 22659107 intergenic not near genes chr3L 22659190 intergenic not near genes chr3L_6_22655001 chr3L_22655001 RAL-142 1635 chr3L 22797308 22797363 chr3L 22797423 22797491 23 118 7.5 6.0 6.8 2.9 183 chr3L 22797308 3` UTR jim - chr3L 22797400 3` UTR jim - chr3L 22797491 3` UTR jim - chr3L_23_22795001 chr3L_22795001 RAL-142 1636 chr3L 22853442 22853723 chr3L 22853552 22853844 38 112 4.5 10.0 7.2 4.6 402 chr3L 22853442 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853643 5` UTR CR43426 + chr3L 22853844 5` UTR CR43426 + chr3L_38_22850001 chr3L_22850001 RAL-142 1637 chr3L 22865971 22866007 chr3L 22867122 22867175 Doc 9 1164 6.5 7.0 6.8 1.2 1204 chr3L 22865971 intron CG33170 + chr3L 22866573 intron CG33170 + chr3L 22867175 intron CG33170 + chr3L_9_22865001 chr3L_22865001 RAL-142 1638 chr3L 9307795 9307796 chr3L 22908066 22908066 7 13600270 9.0 20.5 14.8 0.4 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_7_16105001 chr3L_16105001 RAL-142 1639 chr3L 20525228 20525230 chr3L 22908066 22908066 5 2382837 19.5 20.5 20.0 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-142 1640 chr3L 22908066 22908066 chr3L 24821493 24821494 4 1913428 16.0 16.0 16.0 0.2 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-142 1641 chr3L 19220634 19220636 chr3L 22908067 22908067 6 3687432 7.5 20.5 14.0 0.4 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-142 1642 chr3L 23101261 23101314 chr3L 23101506 23101560 7 242 0.0 2.0 1.0 3.5 299 chr3L 23101261 intron CkIIalpha + chr3L 23101410 intron CkIIalpha + chr3L 23101560 intron CkIIalpha + chr3L_7_23100001 chr3L_23100001 RAL-142 1643 chr3L 23205422 23205432 chr3L 23205687 23205696 5 265 8.0 5.0 6.5 0.7 274 chr3L 23205422 intergenic not near genes chr3L 23205559 intergenic not near genes chr3L 23205696 intergenic not near genes chr3L_5_23205001 chr3L_23205001 RAL-142 1644 chr3L 23205438 23205448 chr3L 23205678 23205687 4 243 7.0 4.0 5.5 0.6 249 chr3L 23205438 intergenic not near genes chr3L 23205562 intergenic not near genes chr3L 23205687 intergenic not near genes chr3L_4_23205001 chr3L_23205001 RAL-142 1645 chr3L 23402274 23402320 chr3L 23402378 23402425 5 100 1.0 1.5 1.2 2.3 151 chr3L 23402274 intergenic not near genes chr3L 23402350 intergenic not near genes chr3L 23402425 intergenic not near genes chr3L_5_23400001 chr3L_23400001 RAL-142 1646 chr3L 24791865 24791914 chr3L 24796679 24796716 Doc 6 4808 2.5 2.5 2.5 1.7 4851 chr3L 24791865 intergenic not near genes chr3L 24794290 intergenic not near genes chr3L 24796716 intergenic not near genes chr3L_6_24790001 chr3L_24790001 RAL-142 1647 chr3L 25331643 25331653 chr3L 25331732 25331732 4 96 0.5 2.5 1.5 1.6 89 chr3L 25331643 intergenic not near genes chr3L 25331688 intergenic not near genes chr3L 25331732 intergenic not near genes chr3L_4_25330001 chr3L_25330001 RAL-142 1648 chr3L 26720964 26721007 chr3L 26722335 26722338 INE-1 4 1356 4.0 4.0 4.0 0.8 1374 chr3L 26720964 intergenic not near genes chr3L 26721651 intergenic not near genes chr3L 26722338 intergenic not near genes chr3L_4_26720001 chr3L_26720001 RAL-142 1649 chr3L 27390433 27390712 chr3L 27390689 27390803 14 107 10.0 13.0 11.5 1.1 370 chr3L 27390433 intron Dbp80 + chr3L 27390618 intron Dbp80 + chr3L 27390803 intron Dbp80 + chr3L_14_27390001 chr3L_27390001 RAL-142 1650 chr3L 28005554 28005597 chr3L 28005666 28005685 10 106 1.5 0.5 1.0 5.0 131 chr3L 28005554 intron CG17514 - chr3L 28005620 intron CG17514 - chr3L 28005685 intron CG17514 - chr3L_10_28005001 chr3L_28005001 RAL-142 1651 chr3R 2534139 2534164 chr3R 2541700 2541742 13 7579 16.5 2.0 9.2 1.3 7603 chr3R 2534139 intergenic not near genes chr3R 2537940 intergenic not near genes chr3R 2541742 intergenic not near genes chr3R_13_2535001 chr3R_2535001 RAL-142 1652 chr3R 4206045 4206101 chr3R 4211645 4211711 mdg3 15 5601 4.0 5.0 4.5 2.7 5666 chr3R 4206045 intron CG14636 - chr3R 4208878 intron CG14636 - chr3R 4211711 intron CG14636 - chr3R_15_4205001 chr3R_4205001 RAL-142 1653 chr3R 4366747 4366775 chr3R 4375138 4375192 roo 10 8406 6.5 7.0 6.8 1.3 8445 chr3R 4366747 3` UTR CG1090 + chr3R 4370970 intergenic not near genes chr3R 4375192 5` UTR CR44922 + chr3R_10_4370001 chr3R_4370001 RAL-142 1654 chr3R 4408394 4408410 chr3R 4412733 4412744 Juan 4 4336 13.0 6.5 9.8 0.4 4350 chr3R 4408394 intron CG32944 - chr3R 4410569 intron CG32944 - chr3R 4412744 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-142 1655 chr3R 4408414 4408437 chr3R 4412727 4412756 Juan 12 4330 9.0 5.0 7.0 1.5 4342 chr3R 4408414 intron CG32944 - chr3R 4410585 intron CG32944 - chr3R 4412756 intron CG32944 - chr3R_12_4410001 chr3R_4410001 RAL-142 1656 chr3R 4609532 4609565 chr3R 4610716 4610764 1360 6 1188 1.5 0.5 1.0 3.0 1232 chr3R 4609532 intergenic not near genes chr3R 4610148 intergenic not near genes chr3R 4610764 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-142 1657 chr3R 4657256 4657272 chr3R 4657595 4657598 4 336 4.5 3.0 3.8 0.8 342 chr3R 4657256 intron spartin + chr3R 4657427 intron spartin + chr3R 4657598 exon spartin + chr3R_4_4655001 chr3R_4655001 RAL-142 1658 chr3R 4680674 4680726 chr3R 4680788 4680820 5 108 2.5 1.0 1.8 1.8 146 chr3R 4680674 intron CG43427 + chr3R 4680747 intron CG43427 + chr3R 4680820 5` UTR CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-142 1659 chr3R 4753238 4753265 chr3R 4757547 4757572 F-element 9 4321 10.0 11.5 10.8 0.8 4334 chr3R 4753238 intron,intron atms +,CG44098 - chr3R 4755405 intron,intron atms +,CG44098 - chr3R 4757572 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-142 1660 chr3R 4769149 4769187 chr3R 4769246 4769295 10 104 3.0 6.0 4.5 1.8 146 chr3R 4769149 intron,intron atms +,CG44098 - chr3R 4769222 intron,intron atms +,CG44098 - chr3R 4769295 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-142 1661 chr3R 4861532 4861594 chr3R 4861647 4861700 6 98 3.0 2.0 2.5 1.7 168 chr3R 4861532 intron opa + chr3R 4861616 intron opa + chr3R 4861700 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-142 1662 chr3R 4887482 4887501 chr3R 4894864 4894883 rover 8 7381 4.5 3.0 3.8 1.7 7401 chr3R 4887482 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894883 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-142 1663 chr3R 4922315 4922355 chr3R 4922429 4922469 10 109 2.0 0.5 1.2 4.5 154 chr3R 4922315 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922469 intron Cdep + chr3R_10_4920001 chr3R_4920001 RAL-142 1664 chr3R 4966000 4966036 chr3R 4966112 4966163 5 114 1.5 3.0 2.2 1.6 163 chr3R 4966000 intron CG1124 + chr3R 4966082 intron CG1124 + chr3R 4966163 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-142 1665 chr3R 5045831 5045874 chr3R 5052968 5053011 HMS-Beagle 8 7133 6.0 3.5 4.8 1.4 7180 chr3R 5045831 intron CR43635 - chr3R 5049421 intergenic not near genes chr3R 5053011 intergenic CR45588 - chr3R_8_5045001 chr3R_5045001 RAL-142 1666 chr3R 5067946 5068008 chr3R 5073498 5073560 mdg3 9 5550 7.0 9.0 8.0 1.0 5614 chr3R 5067946 intergenic not near genes chr3R 5070753 intergenic not near genes chr3R 5073560 intergenic not near genes chr3R_9_5070001 chr3R_5070001 RAL-142 1667 chr3R 5077260 5077307 chr3R 5077431 5077477 4 167 0.0 2.0 1.0 2.0 217 chr3R 5077260 intergenic not near genes chr3R 5077368 intergenic corto - chr3R 5077477 intergenic corto - chr3R_4_5075001 chr3R_5075001 RAL-142 1668 chr3R 5081121 5081134 chr3R 5081245 5081276 7 132 0.5 10.5 5.5 1.1 155 chr3R 5081121 3` UTR corto - chr3R 5081198 3` UTR corto - chr3R 5081276 3` UTR corto - chr3R_7_5080001 chr3R_5080001 RAL-142 1669 chr3R 5158108 5158176 chr3R 5158236 5158268 29 121 8.5 5.0 6.8 3.7 160 chr3R 5158108 intron dpr16 + chr3R 5158188 intron dpr16 + chr3R 5158268 intron dpr16 + chr3R_29_5155001 chr3R_5155001 RAL-142 1670 chr3R 5191365 5191369 chr3R 5191649 5191655 6 266 18.5 30.5 24.5 0.2 290 chr3R 5191365 intron cno - chr3R 5191510 intron cno - chr3R 5191655 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-142 1671 chr3R 5338381 5338387 chr3R 5343589 5343599 Rt1c 4 5211 9.5 8.0 8.8 0.4 5218 chr3R 5338381 intron mtd - chr3R 5340990 intron mtd - chr3R 5343599 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-142 1672 chr3R 5338389 5338426 chr3R 5343579 5343613 Rt1c 10 5200 4.0 8.0 6.0 1.4 5224 chr3R 5338389 intron mtd - chr3R 5341001 intron mtd - chr3R 5343613 intron mtd - chr3R_10_5340001 chr3R_5340001 RAL-142 1673 chr3R 5385967 5386004 chr3R 5386157 5386175 16 188 5.5 10.0 7.8 1.8 208 chr3R 5385967 intron kkv - chr3R 5386071 intron kkv - chr3R 5386175 intron kkv - chr3R_16_5385001 chr3R_5385001 RAL-142 1674 chr3R 5445945 5445957 chr3R 5452440 5452452 Burdock 5 6494 10.0 8.5 9.2 0.5 6507 chr3R 5445945 intron CG14669 + chr3R 5449198 intron CG14669 + chr3R 5452452 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-142 1675 chr3R 5445960 5445987 chr3R 5452424 5452477 Burdock 16 6485 6.0 5.5 5.8 2.4 6517 chr3R 5445960 intron CG14669 + chr3R 5449218 intron CG14669 + chr3R 5452477 intron CG14669 + chr3R_16_5445001 chr3R_5445001 RAL-142 1676 chr3R 5646260 5646321 chr3R 5646390 5646454 18 118 7.5 4.0 5.8 2.6 194 chr3R 5646260 intron MTA1-like - chr3R 5646357 intron MTA1-like - chr3R 5646454 intron MTA1-like - chr3R_18_5645001 chr3R_5645001 RAL-142 1677 chr3R 5680768 5680816 chr3R 5680869 5680930 20 110 7.5 4.0 5.8 2.9 162 chr3R 5680768 3` UTR Rab23 - chr3R 5680849 3` UTR Rab23 - chr3R 5680930 3` UTR Rab23 - chr3R_20_5680001 chr3R_5680001 RAL-142 1678 chr3R 5688767 5688812 chr3R 5688903 5688938 18 138 9.0 9.5 9.2 1.8 171 chr3R 5688767 intron plx + chr3R 5688852 intron plx + chr3R 5688938 intron plx + chr3R_18_5685001 chr3R_5685001 RAL-142 1679 chr3R 5745994 5746040 chr3R 5746255 5746313 pogo 16 269 2.5 8.5 5.5 2.5 319 chr3R 5745994 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746313 3` UTR Madm + chr3R_16_5745001 chr3R_5745001 RAL-142 1680 chr3R 5746990 5747040 chr3R 5753214 5753266 diver 17 6224 5.5 6.5 6.0 2.4 6276 chr3R 5746990 intergenic Madm + chr3R 5750128 intergenic not near genes chr3R 5753266 intergenic CG2091 - chr3R_17_5750001 chr3R_5750001 RAL-142 1681 chr3R 5809110 5809142 chr3R 5809365 5809427 pogo 14 279 4.0 3.0 3.5 3.1 317 chr3R 5809110 3` UTR CG11000 + chr3R 5809268 3` UTR CG11000 + chr3R 5809427 3` UTR CG11000 + chr3R_14_5805001 chr3R_5805001 RAL-142 1682 chr3R 5822351 5822411 chr3R 5823553 5823573 1360 16 1196 7.0 8.5 7.8 1.8 1222 chr3R 5822351 3` UTR CG2023 - chr3R 5822962 3` UTR CG2023 - chr3R 5823573 3` UTR CG2023 - chr3R_16_5820001 chr3R_5820001 RAL-142 1683 chr3R 5927538 5927581 chr3R 5927803 5927853 pogo 7 264 0.0 8.0 4.0 1.4 315 chr3R 5927538 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927853 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-142 1684 chr3R 5945297 5945306 chr3R 5945398 5945421 5 109 3.5 12.5 8.0 0.6 124 chr3R 5945297 intron CG34113 - chr3R 5945359 intron CG34113 - chr3R 5945421 intron CG34113 - chr3R_5_5945001 chr3R_5945001 RAL-142 1685 chr3R 6015962 6015981 chr3R 6024449 6024473 Tirant 4 8490 1.5 1.0 1.2 1.8 8511 chr3R 6015962 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024473 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-142 1686 chr3R 6124198 6124253 chr3R 6124316 6124367 10 110 2.0 1.5 1.8 3.6 169 chr3R 6124198 3` UTR Vha14-2 + chr3R 6124282 3` UTR Vha14-2 + chr3R 6124367 3` UTR Vha14-2 + chr3R_10_6120001 chr3R_6120001 RAL-142 1687 chr3R 6158477 6158525 chr3R 6167095 6167112 Tirant 8 8613 11.5 4.0 7.8 0.9 8635 chr3R 6158477 intergenic not near genes chr3R 6162794 intergenic not near genes chr3R 6167112 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-142 1688 chr3R 6175149 6175200 chr3R 6182453 6182507 HMS-Beagle2 25 7296 8.0 2.0 5.0 4.2 7358 chr3R 6175149 intergenic Osi1 + chr3R 6178828 intron CR45194 + chr3R 6182507 intergenic CR45194 + chr3R_25_6175001 chr3R_6175001 RAL-142 1689 chr3R 6187766 6187774 chr3R 6195519 6195547 7 7760 23.5 21.5 22.5 0.3 7781 chr3R 6187766 intron NPFR + chr3R 6191656 intron NPFR + chr3R 6195547 intergenic NPFR + chr3R_7_6190001 chr3R_6190001 RAL-142 1690 chr3R 6206266 6206303 chr3R 6206508 6206530 BS 5 241 8.5 9.5 9.0 0.5 264 chr3R 6206266 exon Osi24 + chr3R 6206398 intron Osi24 + chr3R 6206530 intron Osi24 + chr3R_5_6205001 chr3R_6205001 RAL-142 1691 chr3R 6206306 6206320 chr3R 6206503 6206519 BS 11 225 7.0 8.0 7.5 1.3 213 chr3R 6206306 exon Osi24 + chr3R 6206412 intron Osi24 + chr3R 6206519 intron Osi24 + chr3R_11_6205001 chr3R_6205001 RAL-142 1692 chr3R 6222278 6222337 chr3R 6222394 6222438 27 112 3.5 5.5 4.5 4.9 160 chr3R 6222278 intergenic Osi4 - chr3R 6222358 intergenic not near genes chr3R 6222438 intergenic not near genes chr3R_27_6220001 chr3R_6220001 RAL-142 1693 chr3R 6428786 6428839 chr3R 6428918 6428957 13 131 3.0 4.5 3.8 2.7 171 chr3R 6428786 intron gpp + chr3R 6428872 intron gpp + chr3R 6428957 intron gpp + chr3R_13_6425001 chr3R_6425001 RAL-142 1694 chr3R 6444780 6444839 chr3R 6444892 6444944 21 107 8.0 8.0 8.0 2.3 164 chr3R 6444780 intron gpp + chr3R 6444862 intron gpp + chr3R 6444944 intron gpp + chr3R_21_6440001 chr3R_6440001 RAL-142 1695 chr3R 6461547 6461610 chr3R 6461658 6461725 43 112 13.0 9.0 11.0 3.6 178 chr3R 6461547 intergenic not near genes chr3R 6461636 intergenic not near genes chr3R 6461725 intergenic not near genes chr3R_43_6460001 chr3R_6460001 RAL-142 1696 chr3R 6479914 6479942 chr3R 6480016 6480053 8 110 7.0 3.0 5.0 1.3 139 chr3R 6479914 intron CG15186 + chr3R 6479984 intron CG15186 + chr3R 6480053 intron CG15186 + chr3R_8_6475001 chr3R_6475001 RAL-142 1697 chr3R 6479944 6479967 chr3R 6480014 6480078 8 104 3.0 3.0 3.0 2.0 134 chr3R 6479944 intron CG15186 + chr3R 6480011 intron CG15186 + chr3R 6480078 intron CG15186 + chr3R_8_6480001 chr3R_6480001 RAL-142 1698 chr3R 6523297 6523344 chr3R 6523703 6523728 15 406 2.0 5.5 3.8 3.1 431 chr3R 6523297 intergenic not near genes chr3R 6523512 intergenic not near genes chr3R 6523728 intergenic not near genes chr3R_15_6520001 chr3R_6520001 RAL-142 1699 chr3R 6532074 6532130 chr3R 6532483 6532524 14 406 7.5 5.5 6.5 1.9 450 chr3R 6532074 intron dpr11 - chr3R 6532299 intron dpr11 - chr3R 6532524 intron dpr11 - chr3R_14_6530001 chr3R_6530001 RAL-142 1700 chr3R 6561922 6561944 chr3R 6562041 6562048 5 116 8.5 9.0 8.8 0.5 126 chr3R 6561922 intron dpr11 - chr3R 6561985 intron dpr11 - chr3R 6562048 intron dpr11 - chr3R_5_6560001 chr3R_6560001 RAL-142 1701 chr3R 6561953 6561973 chr3R 6562037 6562092 5 108 7.0 8.5 7.8 0.6 139 chr3R 6561953 intron dpr11 - chr3R 6562022 intron dpr11 - chr3R 6562092 intron dpr11 - chr3R_5_6560001 chr3R_6560001 RAL-142 1702 chr3R 6639909 6639933 chr3R 6639987 6639996 4 86 4.5 0.0 2.2 1.2 87 chr3R 6639909 intergenic not near genes chr3R 6639952 intergenic not near genes chr3R 6639996 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-142 1703 chr3R 6689315 6689371 chr3R 6689424 6689440 22 106 9.5 4.5 7.0 2.8 125 chr3R 6689315 intergenic Ccp84Af - chr3R 6689378 intergenic Ccp84Af - chr3R 6689440 intergenic Ccp84Af - chr3R_22_6685001 chr3R_6685001 RAL-142 1704 chr3R 6693611 6693674 chr3R 6693730 6693785 18 118 1.0 5.0 3.0 4.5 174 chr3R 6693611 intergenic Ccp84Ad + chr3R 6693698 intergenic Ccp84Ad + chr3R 6693785 intergenic Ccp84Ad + chr3R_18_6690001 chr3R_6690001 RAL-142 1705 chr3R 6693979 6694007 chr3R 6694077 6694111 11 117 3.5 5.5 4.5 2.0 132 chr3R 6693979 intergenic Ccp84Ad + chr3R 6694045 intergenic not near genes chr3R 6694111 intergenic not near genes chr3R_11_6690001 chr3R_6690001 RAL-142 1706 chr3R 6705675 6705718 chr3R 6705909 6705959 12 251 0.0 3.5 1.8 4.3 284 chr3R 6705675 intergenic not near genes chr3R 6705817 intergenic not near genes chr3R 6705959 intergenic not near genes chr3R_12_6705001 chr3R_6705001 RAL-142 1707 chr3R 6725128 6725187 chr3R 6725298 6725342 8 165 4.5 3.0 3.8 1.7 214 chr3R 6725128 intron pb - chr3R 6725235 intron pb - chr3R 6725342 intron pb - chr3R_8_6725001 chr3R_6725001 RAL-142 1708 chr3R 6737487 6737532 chr3R 6739293 6739319 Doc 8 1800 2.0 6.5 4.2 1.5 1832 chr3R 6737487 intron pb - chr3R 6738403 intron pb - chr3R 6739319 intron pb - chr3R_8_6735001 chr3R_6735001 RAL-142 1709 chr3R 6827997 6828036 chr3R 6828104 6828147 12 109 5.0 2.0 3.5 2.7 150 chr3R 6827997 intron Scr - chr3R 6828072 intron Scr - chr3R 6828147 intron Scr - chr3R_12_6825001 chr3R_6825001 RAL-142 1710 chr3R 6856349 6856397 chr3R 6856501 6856549 11 150 2.0 1.5 1.8 3.9 200 chr3R 6856349 intergenic not near genes chr3R 6856449 intergenic not near genes chr3R 6856549 intergenic not near genes chr3R_11_6855001 chr3R_6855001 RAL-142 1711 chr3R 6862189 6862245 chr3R 6862308 6862367 11 117 4.5 4.0 4.2 2.1 178 chr3R 6862189 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862367 intergenic not near genes chr3R_11_6860001 chr3R_6860001 RAL-142 1712 chr3R 6912070 6912132 chr3R 6912212 6912278 6 142 2.0 2.5 2.2 1.9 208 chr3R 6912070 intron Antp - chr3R 6912174 intron Antp - chr3R 6912278 intron Antp - chr3R_6_6910001 chr3R_6910001 RAL-142 1713 chr3R 6961166 6961173 chr3R 6961264 6961287 4 106 6.5 14.0 10.2 0.4 121 chr3R 6961166 intron Antp - chr3R 6961226 intron Antp - chr3R 6961287 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-142 1714 chr3R 6961178 6961192 chr3R 6961262 6961306 6 105 6.0 14.0 10.0 0.5 128 chr3R 6961178 intron Antp - chr3R 6961242 intron Antp - chr3R 6961306 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-142 1715 chr3R 6999773 6999831 chr3R 7000123 7000181 20 347 11.0 8.0 9.5 1.9 408 chr3R 6999773 intergenic not near genes chr3R 6999977 intergenic not near genes chr3R 7000181 intergenic not near genes chr3R_20_6995001 chr3R_6995001 RAL-142 1716 chr3R 7103277 7103310 chr3R 7103360 7103378 11 89 2.5 11.0 6.8 1.4 101 chr3R 7103277 intron Alh - chr3R 7103328 intron Alh - chr3R 7103378 intron Alh - chr3R_11_7100001 chr3R_7100001 RAL-142 1717 chr3R 7121705 7121734 chr3R 7121822 7121835 6 114 9.5 7.5 8.5 0.6 130 chr3R 7121705 exon Alh - chr3R 7121770 intron Alh - chr3R 7121835 intron Alh - chr3R_6_7120001 chr3R_7120001 RAL-142 1718 chr3R 7126468 7126533 chr3R 7126598 7126662 31 126 4.0 6.5 5.2 5.0 194 chr3R 7126468 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126565 3` UTR CG10068 - chr3R 7126662 3` UTR CG10068 - chr3R_31_7125001 chr3R_7125001 RAL-142 1719 chr3R 7173647 7173709 chr3R 7173761 7173789 16 111 5.0 6.0 5.5 2.5 142 chr3R 7173647 intron sas + chr3R 7173718 intron sas + chr3R 7173789 intron sas + chr3R_16_7170001 chr3R_7170001 RAL-142 1720 chr3R 7210560 7210614 chr3R 7210671 7210720 11 111 0.0 5.0 2.5 3.1 160 chr3R 7210560 intergenic not near genes chr3R 7210640 intergenic not near genes chr3R 7210720 intergenic not near genes chr3R_11_7210001 chr3R_7210001 RAL-142 1721 chr3R 7252374 7252425 chr3R 7252496 7252547 26 119 5.5 5.5 5.5 4.0 173 chr3R 7252374 3` UTR Gld - chr3R 7252460 3` UTR Gld - chr3R 7252547 3` UTR Gld - chr3R_26_7250001 chr3R_7250001 RAL-142 1722 chr3R 7367814 7367828 chr3R 7367971 7368001 6 168 9.0 3.5 6.2 0.8 187 chr3R 7367814 exon MstProx - chr3R 7367908 exon MstProx - chr3R 7368001 exon MstProx - chr3R_6_7365001 chr3R_7365001 RAL-142 1723 chr3R 7367829 7367860 chr3R 7367970 7367971 13 161 4.5 3.0 3.8 2.7 142 chr3R 7367829 exon MstProx - chr3R 7367900 exon MstProx - chr3R 7367971 exon MstProx - chr3R_13_7365001 chr3R_7365001 RAL-142 1724 chr3R 7447967 7447974 chr3R 7448080 7448087 5 113 13.5 10.0 11.8 0.4 120 chr3R 7447967 intergenic not near genes chr3R 7448027 intergenic not near genes chr3R 7448087 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-142 1725 chr3R 7447975 7448008 chr3R 7448070 7448120 12 111 7.0 8.5 7.8 1.4 145 chr3R 7447975 intergenic not near genes chr3R 7448048 intergenic not near genes chr3R 7448120 intergenic not near genes chr3R_12_7445001 chr3R_7445001 RAL-142 1726 chr3R 7508342 7508400 chr3R 7508467 7508508 11 122 3.5 3.0 3.2 2.6 166 chr3R 7508342 intergenic not near genes chr3R 7508425 intergenic not near genes chr3R 7508508 intergenic not near genes chr3R_11_7505001 chr3R_7505001 RAL-142 1727 chr3R 7589774 7589821 chr3R 7589923 7589977 7 146 3.0 4.5 3.8 1.5 203 chr3R 7589774 intron CG34127 - chr3R 7589876 intron CG34127 - chr3R 7589977 intron CG34127 - chr3R_7_7585001 chr3R_7585001 RAL-142 1728 chr3R 7619956 7620005 chr3R 7620075 7620117 9 119 1.5 1.5 1.5 3.6 161 chr3R 7619956 intron CG34127 - chr3R 7620036 intron CG34127 - chr3R 7620117 intron CG34127 - chr3R_9_7620001 chr3R_7620001 RAL-142 1729 chr3R 7625271 7625282 chr3R 7625754 7625765 5 483 5.5 3.5 4.5 0.9 494 chr3R 7625271 intron CG34127 - chr3R 7625518 intron CG34127 - chr3R 7625765 intron CG34127 - chr3R_5_7625001 chr3R_7625001 RAL-142 1730 chr3R 7625288 7625317 chr3R 7625751 7625800 10 477 3.5 3.5 3.5 2.2 512 chr3R 7625288 intron CG34127 - chr3R 7625544 intron CG34127 - chr3R 7625800 intron CG34127 - chr3R_10_7625001 chr3R_7625001 RAL-142 1731 chr3R 7654977 7655033 chr3R 7655087 7655120 8 108 0.5 1.0 0.8 4.4 143 chr3R 7654977 intergenic not near genes chr3R 7655048 intergenic not near genes chr3R 7655120 intergenic not near genes chr3R_8_7655001 chr3R_7655001 RAL-142 1732 chr3R 7677899 7677947 chr3R 7678026 7678054 8 126 2.5 3.5 3.0 2.0 155 chr3R 7677899 intron Nlg1 + chr3R 7677976 intron Nlg1 + chr3R 7678054 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-142 1733 chr3R 7680829 7680877 chr3R 7681475 7681498 9 635 2.5 3.5 3.0 2.2 669 chr3R 7680829 intron Nlg1 + chr3R 7681164 intron Nlg1 + chr3R 7681498 intron Nlg1 + chr3R_9_7680001 chr3R_7680001 RAL-142 1734 chr3R 7694544 7694554 chr3R 7713640 7713650 invader3 5 19096 10.5 2.0 6.2 0.7 19106 chr3R 7694544 3` UTR Nlg1 + chr3R 7704097 intergenic not near genes chr3R 7713650 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-142 1735 chr3R 7694560 7694603 chr3R 7713638 7713677 invader3 9 19082 2.5 2.0 2.2 2.8 19117 chr3R 7694560 3` UTR Nlg1 + chr3R 7704118 intergenic not near genes chr3R 7713677 intergenic not near genes chr3R_9_7700001 chr3R_7700001 RAL-142 1736 chr3R 7729445 7729488 chr3R 7737404 7737460 Stalker2 12 7957 6.0 5.5 5.8 1.8 8015 chr3R 7729445 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737460 intergenic not near genes chr3R_12_7730001 chr3R_7730001 RAL-142 1737 chr3R 7830291 7830329 chr3R 7830451 7830501 6 167 1.0 1.5 1.2 2.7 210 chr3R 7830291 intron CG34384 + chr3R 7830396 intron CG34384 + chr3R 7830501 intron CG34384 + chr3R_6_7830001 chr3R_7830001 RAL-142 1738 chr3R 7849609 7849677 chr3R 7850811 7850845 1360 24 1186 3.0 7.0 5.0 4.0 1236 chr3R 7849609 intron CG34384 + chr3R 7850227 intron CG34384 + chr3R 7850845 intron CG34384 + chr3R_24_7850001 chr3R_7850001 RAL-142 1739 chr3R 7857609 7857673 chr3R 7857727 7857770 26 110 4.5 3.5 4.0 5.2 161 chr3R 7857609 3` UTR CG17816 - chr3R 7857690 3` UTR CG17816 - chr3R 7857770 3` UTR CG17816 - chr3R_26_7855001 chr3R_7855001 RAL-142 1740 chr3R 7883097 7883151 chr3R 7883210 7883264 16 108 8.5 8.0 8.2 1.7 167 chr3R 7883097 intron CG17816 - chr3R 7883180 intron CG17816 - chr3R 7883264 intron CG17816 - chr3R_16_7880001 chr3R_7880001 RAL-142 1741 chr3R 7933113 7933176 chr3R 7933233 7933281 18 114 3.0 7.5 5.2 2.9 168 chr3R 7933113 intron dsx - chr3R 7933197 intron dsx - chr3R 7933281 intron dsx - chr3R_18_7930001 chr3R_7930001 RAL-142 1742 chr3R 7948412 7948467 chr3R 7948524 7948561 11 98 3.0 4.0 3.5 2.4 149 chr3R 7948412 intron dsx - chr3R 7948486 intron dsx - chr3R 7948561 intron dsx - chr3R_11_7945001 chr3R_7945001 RAL-142 1743 chr3R 7955907 7955962 chr3R 7956019 7956049 9 105 3.5 3.5 3.5 2.0 142 chr3R 7955907 intron dsx - chr3R 7955978 intron dsx - chr3R 7956049 intron dsx - chr3R_9_7955001 chr3R_7955001 RAL-142 1744 chr3R 7973287 7973336 chr3R 7974384 7974433 1360 15 1095 3.5 2.5 3.0 3.8 1146 chr3R 7973287 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974433 3` UTR CD98hc - chr3R_15_7970001 chr3R_7970001 RAL-142 1745 chr3R 8072861 8072882 chr3R 8072928 8072928 6 72 3.5 0.0 1.8 2.1 67 chr3R 8072861 intron mAChR-B + chr3R 8072894 intron mAChR-B + chr3R 8072928 intron mAChR-B + chr3R_6_8070001 chr3R_8070001 RAL-142 1746 chr3R 8090262 8090294 chr3R 8090449 8090499 11 202 6.0 4.0 5.0 1.8 237 chr3R 8090262 5` UTR CR44330 + chr3R 8090380 intergenic CR44330 + chr3R 8090499 intergenic CR44330 + chr3R_11_8090001 chr3R_8090001 RAL-142 1747 chr3R 8094381 8094435 chr3R 8099721 8099775 Transpac 8 5339 3.5 0.5 2.0 2.7 5394 chr3R 8094381 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099775 intron CG7900 + chr3R_8_8095001 chr3R_8095001 RAL-142 1748 chr3R 8101749 8101785 chr3R 8104851 8104904 G2 6 3110 3.0 5.5 4.2 1.2 3155 chr3R 8101749 exon CG7900 + chr3R 8103326 intron CG7900 + chr3R 8104904 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-142 1749 chr3R 8107377 8107416 chr3R 8107521 8107585 11 155 5.0 5.0 5.0 1.8 208 chr3R 8107377 intron puc + chr3R 8107481 intron puc + chr3R 8107585 intron puc + chr3R_11_8105001 chr3R_8105001 RAL-142 1750 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568289 32.0 13.0 22.5 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-142 1751 chr3R 8393552 8393556 chr3R 8393670 8393673 4 118 17.0 12.5 14.8 0.3 121 chr3R 8393552 intron CG45263 - chr3R 8393612 intron CG45263 - chr3R 8393673 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-142 1752 chr3R 8393571 8393585 chr3R 8393664 8393671 8 99 9.5 10.5 10.0 0.7 100 chr3R 8393571 intron CG45263 - chr3R 8393621 intron CG45263 - chr3R 8393671 intron CG45263 - chr3R_8_8390001 chr3R_8390001 RAL-142 1753 chr3R 8393593 8393605 chr3R 8393655 8393712 14 85 7.0 5.5 6.2 1.9 119 chr3R 8393593 intron CG45263 - chr3R 8393652 intron CG45263 - chr3R 8393712 intron CG45263 - chr3R_14_8390001 chr3R_8390001 RAL-142 1754 chr3R 8402979 8403004 chr3R 8412175 8412190 roo 5 9192 11.0 5.5 8.2 0.5 9211 chr3R 8402979 intron CG45263 - chr3R 8407584 intron CG45263 - chr3R 8412190 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-142 1755 chr3R 8403011 8403038 chr3R 8412172 8412213 roo 6 9178 5.0 5.5 5.2 1.0 9202 chr3R 8403011 intron CG45263 - chr3R 8407612 intron CG45263 - chr3R 8412213 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-142 1756 chr3R 8418652 8418697 chr3R 8418776 8418789 8 122 8.5 6.5 7.5 0.9 137 chr3R 8418652 intron CG45263 - chr3R 8418720 intron CG45263 - chr3R 8418789 intron CG45263 - chr3R_8_8415001 chr3R_8415001 RAL-142 1757 chr3R 8450488 8450529 chr3R 8450770 8450790 5 272 2.0 2.5 2.2 1.6 302 chr3R 8450488 intron CG45263 - chr3R 8450639 intron CG45263 - chr3R 8450790 intron CG45263 - chr3R_5_8450001 chr3R_8450001 RAL-142 1758 chr3R 8478077 8478107 chr3R 8478163 8478204 6 104 2.5 3.5 3.0 1.5 127 chr3R 8478077 intergenic CG45263 - chr3R 8478140 intergenic not near genes chr3R 8478204 intergenic not near genes chr3R_6_8475001 chr3R_8475001 RAL-142 1759 chr3R 8570461 8570506 chr3R 8575114 8575134 HMS-Beagle 5 4651 3.0 5.0 4.0 1.0 4673 chr3R 8570461 intergenic not near genes chr3R 8572798 intergenic not near genes chr3R 8575134 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-142 1760 chr3R 8621529 8621556 chr3R 8621616 8621620 6 84 6.0 4.5 5.2 1.0 91 chr3R 8621529 intron 5-HT2B + chr3R 8621574 intron 5-HT2B + chr3R 8621620 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-142 1761 chr3R 8642409 8642438 chr3R 8642505 8642545 4 107 3.0 4.0 3.5 0.9 136 chr3R 8642409 intergenic not near genes chr3R 8642477 intergenic not near genes chr3R 8642545 intergenic not near genes chr3R_4_8640001 chr3R_8640001 RAL-142 1762 chr3R 8685266 8685291 chr3R 8685400 8685401 5 129 1.5 2.0 1.8 1.8 135 chr3R 8685266 intron CR44937 - chr3R 8685334 intron CR44937 - chr3R 8685401 intron CR44937 - chr3R_5_8685001 chr3R_8685001 RAL-142 1763 chr3R 8707319 8707389 chr3R 8709795 8709802 jockey 8 2459 0.5 2.0 1.2 3.6 2483 chr3R 8707319 intergenic not near genes chr3R 8708560 intergenic not near genes chr3R 8709802 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-142 1764 chr3R 8735671 8735728 chr3R 8735811 8735855 23 135 6.5 9.5 8.0 2.6 184 chr3R 8735671 3` UTR CG8202 + chr3R 8735763 3` UTR CG8202 + chr3R 8735855 intergenic CG8202 +,CG9801 - chr3R_23_8735001 chr3R_8735001 RAL-142 1765 chr3R 8742973 8743021 chr3R 8743736 8743744 11 756 1.5 1.0 1.2 5.0 771 chr3R 8742973 intron CG9801 - chr3R 8743358 intron CG9801 - chr3R 8743744 intron CG9801 - chr3R_11_8740001 chr3R_8740001 RAL-142 1766 chr3R 8917853 8917909 chr3R 8917968 8918024 27 111 3.5 4.5 4.0 5.4 171 chr3R 8917853 intron pyd - chr3R 8917938 intron pyd - chr3R 8918024 intron pyd - chr3R_27_8915001 chr3R_8915001 RAL-142 1767 chr3R 9073743 9073774 chr3R 9074018 9074028 16 282 8.5 6.0 7.2 2.0 285 chr3R 9073743 intron pum - chr3R 9073886 intron pum - chr3R 9074028 intron pum - chr3R_16_9070001 chr3R_9070001 RAL-142 1768 chr3R 9101811 9101867 chr3R 9101944 9101989 8 130 2.5 1.5 2.0 2.7 178 chr3R 9101811 intron pum - chr3R 9101900 intron pum - chr3R 9101989 intron pum - chr3R_8_9100001 chr3R_9100001 RAL-142 1769 chr3R 9141116 9141168 chr3R 9141227 9141286 16 111 6.0 5.0 5.5 2.5 170 chr3R 9141116 intron pum - chr3R 9141201 intron pum - chr3R 9141286 intron pum - chr3R_16_9140001 chr3R_9140001 RAL-142 1770 chr3R 9162435 9162486 chr3R 9162546 9162591 6 110 0.5 2.5 1.5 2.4 156 chr3R 9162435 intron pum - chr3R 9162513 intron pum - chr3R 9162591 intron pum - chr3R_6_9160001 chr3R_9160001 RAL-142 1771 chr3R 9316202 9316262 chr3R 9316420 9316448 4 209 2.0 2.0 2.0 1.3 246 chr3R 9316202 intron CG8861 - chr3R 9316325 intron CG8861 - chr3R 9316448 intron CG8861 - chr3R_4_9315001 chr3R_9315001 RAL-142 1772 chr3R 9319546 9319595 chr3R 9320016 9320062 jockey 11 466 3.0 3.5 3.2 2.6 516 chr3R 9319546 intron CG8861 - chr3R 9319804 intron CG8861 - chr3R 9320062 intron CG8861 - chr3R_11_9315001 chr3R_9315001 RAL-142 1773 chr3R 9382811 9382842 chr3R 9382941 9382983 4 135 1.0 4.0 2.5 1.1 172 chr3R 9382811 intron FER - chr3R 9382897 intron FER - chr3R 9382983 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-142 1774 chr3R 9425401 9425429 chr3R 9425515 9425520 4 106 2.0 4.0 3.0 1.0 119 chr3R 9425401 intron ps + chr3R 9425460 intron ps + chr3R 9425520 intron ps + chr3R_4_9425001 chr3R_9425001 RAL-142 1775 chr3R 9699958 9699972 chr3R 9700070 9700096 1360 9 121 13.5 7.5 10.5 0.8 138 chr3R 9699958 intron Unc-115a - chr3R 9700027 intron Unc-115a - chr3R 9700096 intron Unc-115a - chr3R_9_9700001 chr3R_9700001 RAL-142 1776 chr3R 9699975 9700000 chr3R 9700062 9700104 1360 12 111 5.0 7.0 6.0 1.7 129 chr3R 9699975 intron Unc-115a - chr3R 9700040 intron Unc-115a - chr3R 9700104 intron Unc-115a - chr3R_12_9700001 chr3R_9700001 RAL-142 1777 chr3R 9772362 9772384 chr3R 9772462 9772477 4 100 7.0 8.0 7.5 0.5 115 chr3R 9772362 exon Whamy - chr3R 9772420 exon Whamy - chr3R 9772477 exon Whamy - chr3R_4_9770001 chr3R_9770001 RAL-142 1778 chr3R 9772388 9772403 chr3R 9772458 9772468 4 82 3.5 6.5 5.0 0.7 80 chr3R 9772388 exon Whamy - chr3R 9772428 exon Whamy - chr3R 9772468 exon Whamy - chr3R_4_9770001 chr3R_9770001 RAL-142 1779 chr3R 9858656 9858698 chr3R 9858788 9858832 18 133 4.0 7.5 5.8 2.6 176 chr3R 9858656 intron Teh1 - chr3R 9858744 intron Teh1 - chr3R 9858832 intron Teh1 - chr3R_18_9855001 chr3R_9855001 RAL-142 1780 chr3R 9859972 9860004 chr3R 9860114 9860149 12 145 5.5 2.0 3.8 2.5 177 chr3R 9859972 intron Teh1 - chr3R 9860060 intron Teh1 - chr3R 9860149 intron Teh1 - chr3R_12_9860001 chr3R_9860001 RAL-142 1781 chr3R 10073755 10073798 chr3R 10073889 10073941 18 137 6.0 5.5 5.8 2.6 186 chr3R 10073755 3` UTR nerfin-2 + chr3R 10073848 3` UTR CG5361 - chr3R 10073941 exon CG5361 - chr3R_18_10070001 chr3R_10070001 RAL-142 1782 chr3R 10140431 10140464 chr3R 10140550 10140582 4 122 0.0 7.5 3.8 0.8 151 chr3R 10140431 3` UTR TAF1B - chr3R 10140506 3` UTR TAF1B - chr3R 10140582 3` UTR TAF1B - chr3R_4_10140001 chr3R_10140001 RAL-142 1783 chr3R 10231755 10231773 chr3R 10237366 10237378 mdg3 6 5607 5.0 5.5 5.2 1.0 5623 chr3R 10231755 intron CG42795 + chr3R 10234566 intron CG42795 + chr3R 10237378 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-142 1784 chr3R 10231784 10231814 chr3R 10237360 10237405 mdg3 11 5591 2.5 5.0 3.8 2.3 5621 chr3R 10231784 intron CG42795 + chr3R 10234594 intron CG42795 + chr3R 10237405 intron CG42795 + chr3R_11_10230001 chr3R_10230001 RAL-142 1785 chr3R 10255351 10255363 chr3R 10260826 10260838 I-element 4 5475 13.5 4.0 8.8 0.4 5487 chr3R 10255351 3` UTR Sirt6 - chr3R 10258094 intron Sirt6 - chr3R 10260838 exon Sirt6 - chr3R_4_10255001 chr3R_10255001 RAL-142 1786 chr3R 10255364 10255382 chr3R 10260824 10260833 I-element 7 5463 9.0 4.0 6.5 0.9 5469 chr3R 10255364 3` UTR Sirt6 - chr3R 10258098 intron Sirt6 - chr3R 10260833 exon Sirt6 - chr3R_7_10255001 chr3R_10255001 RAL-142 1787 chr3R 10275564 10275583 chr3R 10275675 10275694 4 112 3.0 5.0 4.0 0.8 130 chr3R 10275564 intron CG43143 + chr3R 10275629 intron CG43143 + chr3R 10275694 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-142 1788 chr3R 10400272 10400307 chr3R 10400369 10400393 5 90 5.0 4.0 4.5 0.9 121 chr3R 10400272 3` UTR cwo + chr3R 10400332 3` UTR cwo + chr3R 10400393 3` UTR cwo + chr3R_5_10400001 chr3R_10400001 RAL-142 1789 chr3R 10646073 10646129 chr3R 10646254 10646312 13 183 7.0 1.5 4.2 2.5 239 chr3R 10646073 intergenic CR44018 + chr3R 10646192 intergenic CR44018 + chr3R 10646312 intergenic not near genes chr3R_13_10645001 chr3R_10645001 RAL-142 1790 chr3R 10723735 10723770 chr3R 10723861 10723897 4 124 1.0 0.5 0.8 2.2 162 chr3R 10723735 intergenic not near genes chr3R 10723816 intergenic not near genes chr3R 10723897 intergenic not near genes chr3R_4_10720001 chr3R_10720001 RAL-142 1791 chr3R 10727665 10727670 chr3R 10727750 10727770 4 100 0.5 4.0 2.2 1.2 105 chr3R 10727665 intergenic not near genes chr3R 10727718 intergenic not near genes chr3R 10727770 intergenic not near genes chr3R_4_10725001 chr3R_10725001 RAL-142 1792 chr3R 10732293 10732341 chr3R 10733200 10733243 5 903 1.0 2.0 1.5 2.0 950 chr3R 10732293 intergenic not near genes chr3R 10732768 intergenic not near genes chr3R 10733243 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-142 1793 chr3R 10745446 10745455 chr3R 10745523 10745539 4 94 0.5 3.0 1.8 1.4 93 chr3R 10745446 intron TkR86C - chr3R 10745492 intron TkR86C - chr3R 10745539 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-142 1794 chr3R 10899459 10899479 chr3R 10899523 10899548 12 80 3.5 1.5 2.5 3.4 89 chr3R 10899459 intergenic not near genes chr3R 10899504 intergenic not near genes chr3R 10899548 intergenic not near genes chr3R_12_10895001 chr3R_10895001 RAL-142 1795 chr3R 10919686 10919692 chr3R 10919779 10919785 4 100 3.5 3.5 3.5 0.9 99 chr3R 10919686 intergenic not near genes chr3R 10919736 intergenic not near genes chr3R 10919785 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-142 1796 chr3R 10919695 10919710 chr3R 10919775 10919813 4 94 1.5 3.5 2.5 1.1 118 chr3R 10919695 intergenic not near genes chr3R 10919754 intergenic not near genes chr3R 10919813 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-142 1797 chr3R 10920043 10920059 chr3R 10920126 10920172 5 106 1.5 3.0 2.2 1.6 129 chr3R 10920043 intergenic not near genes chr3R 10920108 intergenic not near genes chr3R 10920172 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-142 1798 chr3R 10920060 10920077 chr3R 10920120 10920165 6 82 1.5 3.0 2.2 1.9 105 chr3R 10920060 intergenic not near genes chr3R 10920112 intergenic not near genes chr3R 10920165 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-142 1799 chr3R 11056866 11056905 chr3R 11056979 11057018 4 112 1.0 0.0 0.5 2.7 152 chr3R 11056866 intergenic not near genes chr3R 11056942 intergenic not near genes chr3R 11057018 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-142 1800 chr3R 11155021 11155069 chr3R 11155134 11155182 5 112 1.5 1.0 1.2 2.3 161 chr3R 11155021 intron Ugt86Dc + chr3R 11155102 intron Ugt86Dc + chr3R 11155182 intron Ugt86Dc + chr3R_5_11155001 chr3R_11155001 RAL-142 1801 chr3R 11280791 11280831 chr3R 11280916 11280949 8 124 2.5 3.0 2.8 2.1 158 chr3R 11280791 intron CR31386 - chr3R 11280870 intron CR31386 - chr3R 11280949 intron CR31386 - chr3R_8_11280001 chr3R_11280001 RAL-142 1802 chr3R 11342527 11342573 chr3R 11342637 11342684 14 102 7.5 11.5 9.5 1.3 157 chr3R 11342527 intron pros + chr3R 11342606 intron pros + chr3R 11342684 intron pros + chr3R_14_11340001 chr3R_11340001 RAL-142 1803 chr3R 11379214 11379244 chr3R 11388394 11388394 roo 8 9181 10.5 5.5 8.0 0.9 9180 chr3R 11379214 intron pros + chr3R 11383804 intron pros + chr3R 11388394 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-142 1804 chr3R 11379245 11379256 chr3R 11388390 11388428 roo 4 9166 8.0 5.0 6.5 0.5 9183 chr3R 11379245 intron pros + chr3R 11383836 intron pros + chr3R 11388428 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-142 1805 chr3R 11518815 11518838 chr3R 11518926 11518949 6 112 4.5 1.5 3.0 1.5 134 chr3R 11518815 intergenic not near genes chr3R 11518882 intergenic not near genes chr3R 11518949 intergenic not near genes chr3R_6_11515001 chr3R_11515001 RAL-142 1806 chr3R 11567768 11567806 chr3R 11567882 11567930 4 120 0.0 1.0 0.5 2.7 162 chr3R 11567768 intergenic not near genes chr3R 11567849 intergenic not near genes chr3R 11567930 intergenic not near genes chr3R_4_11565001 chr3R_11565001 RAL-142 1807 chr3R 11694699 11694720 chr3R 11694827 11694844 10 125 7.5 5.0 6.2 1.4 145 chr3R 11694699 intergenic Fer3 - chr3R 11694772 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_10_11690001 chr3R_11690001 RAL-142 1808 chr3R 11694723 11694752 chr3R 11694816 11694855 7 115 1.5 4.0 2.8 1.8 132 chr3R 11694723 intergenic Fer3 - chr3R 11694789 intergenic Fer3 - chr3R 11694855 intergenic not near genes chr3R_7_11690001 chr3R_11690001 RAL-142 1809 chr3R 11734165 11734190 chr3R 11734289 11734303 6 133 8.0 6.0 7.0 0.8 138 chr3R 11734165 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734303 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-142 1810 chr3R 11811061 11811066 chr3R 11811192 11811197 5 131 20.5 7.0 13.8 0.3 136 chr3R 11811061 5` UTR ClC-a - chr3R 11811129 5` UTR ClC-a - chr3R 11811197 intron ClC-a - chr3R_5_11810001 chr3R_11810001 RAL-142 1811 chr3R 11811067 11811124 chr3R 11811191 11811224 25 115 8.0 7.0 7.5 2.9 157 chr3R 11811067 5` UTR ClC-a - chr3R 11811146 intron ClC-a - chr3R 11811224 intron ClC-a - chr3R_25_11810001 chr3R_11810001 RAL-142 1812 chr3R 11841061 11841100 chr3R 11846249 11846281 BS 8 5193 2.5 4.0 3.2 1.9 5220 chr3R 11841061 intron CG6959 - chr3R 11843671 intron CG6959 - chr3R 11846281 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-142 1813 chr3R 11853434 11853470 chr3R 11853633 11853664 9 192 2.5 3.0 2.8 2.4 230 chr3R 11853434 intron CG6959 - chr3R 11853549 intron CG6959 - chr3R 11853664 intron CG6959 - chr3R_9_11850001 chr3R_11850001 RAL-142 1814 chr3R 11869929 11869973 chr3R 11870022 11870067 11 101 6.5 3.0 4.8 1.9 138 chr3R 11869929 intergenic CG6959 - chr3R 11869998 intergenic not near genes chr3R 11870067 intergenic not near genes chr3R_11_11865001 chr3R_11865001 RAL-142 1815 chr3R 11909348 11909391 chr3R 11909443 11909443 8 81 1.5 3.5 2.5 2.3 95 chr3R 11909348 intron Cad87A - chr3R 11909396 intron Cad87A - chr3R 11909443 intron Cad87A - chr3R_8_11905001 chr3R_11905001 RAL-142 1816 chr3R 11930223 11930268 chr3R 11930331 11930331 8 101 4.0 8.0 6.0 1.1 108 chr3R 11930223 intron Cad87A - chr3R 11930277 intron Cad87A - chr3R 11930331 intron Cad87A - chr3R_8_11930001 chr3R_11930001 RAL-142 1817 chr3R 11957825 11957881 chr3R 11958138 11958144 S-element 11 311 1.5 0.0 0.8 6.1 319 chr3R 11957825 intergenic not near genes chr3R 11957984 intergenic not near genes chr3R 11958144 intergenic not near genes chr3R_11_11955001 chr3R_11955001 RAL-142 1818 chr3R 11990628 11990682 chr3R 11990741 11990805 7 122 1.5 4.5 3.0 1.8 177 chr3R 11990628 intron mfas - chr3R 11990716 intron mfas - chr3R 11990805 intron mfas - chr3R_7_11990001 chr3R_11990001 RAL-142 1819 chr3R 11998937 11998964 chr3R 11999081 11999092 13 145 2.5 2.5 2.5 3.7 155 chr3R 11998937 intron Tk - chr3R 11999014 intron Tk - chr3R 11999092 intron Tk - chr3R_13_11995001 chr3R_11995001 RAL-142 1820 chr3R 12017009 12017018 chr3R 12017121 12017130 4 110 9.5 19.5 14.5 0.3 121 chr3R 12017009 5` UTR CG3313 - chr3R 12017070 intergenic CG3313 -,Spt3 + chr3R 12017130 intergenic Spt3 +,CG3313 - chr3R_4_12015001 chr3R_12015001 RAL-142 1821 chr3R 12022856 12022909 chr3R 12025067 12025104 pogo 11 2204 2.5 4.0 3.2 2.6 2248 chr3R 12022856 intergenic not near genes chr3R 12023980 intergenic not near genes chr3R 12025104 intergenic not near genes chr3R_11_12020001 chr3R_12020001 RAL-142 1822 chr3R 12029900 12029954 chr3R 12030022 12030075 12 115 7.5 3.0 5.2 1.9 175 chr3R 12029900 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029988 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030075 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_12_12025001 chr3R_12025001 RAL-142 1823 chr3R 12045140 12045174 chr3R 12045250 12045285 9 107 10.0 5.5 7.8 1.0 145 chr3R 12045140 intergenic not near genes chr3R 12045212 intergenic not near genes chr3R 12045285 intergenic not near genes chr3R_9_12045001 chr3R_12045001 RAL-142 1824 chr3R 12086337 12086393 chr3R 12086451 12086459 20 106 3.5 2.0 2.8 5.3 122 chr3R 12086337 intron CG14741 - chr3R 12086398 intron CG14741 - chr3R 12086459 intron CG14741 - chr3R_20_12085001 chr3R_12085001 RAL-142 1825 chr3R 12175609 12175657 chr3R 12175716 12175764 12 114 3.5 2.0 2.8 3.2 155 chr3R 12175609 intergenic not near genes chr3R 12175686 intergenic not near genes chr3R 12175764 intergenic not near genes chr3R_12_12175001 chr3R_12175001 RAL-142 1826 chr3R 12183161 12183205 chr3R 12183273 12183326 9 114 3.0 6.5 4.8 1.6 165 chr3R 12183161 intergenic not near genes chr3R 12183244 intergenic not near genes chr3R 12183326 intergenic not near genes chr3R_9_12180001 chr3R_12180001 RAL-142 1827 chr3R 12297634 12297642 chr3R 12297734 12297735 4 98 7.5 12.0 9.8 0.4 101 chr3R 12297634 intron svp + chr3R 12297684 intron svp + chr3R 12297735 intron svp + chr3R_4_12295001 chr3R_12295001 RAL-142 1828 chr3R 12306383 12306391 chr3R 12306465 12306517 4 116 2.0 1.5 1.8 1.4 134 chr3R 12306383 intergenic not near genes chr3R 12306450 intergenic not near genes chr3R 12306517 intergenic not near genes chr3R_4_12305001 chr3R_12305001 RAL-142 1829 chr3R 12392859 12392880 chr3R 12392993 12392998 5 125 7.5 14.0 10.8 0.4 139 chr3R 12392859 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392928 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392998 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_5_12390001 chr3R_12390001 RAL-142 1830 chr3R 12538157 12538212 chr3R 12538271 12538325 6 113 4.0 3.5 3.8 1.2 168 chr3R 12538157 intron Octbeta3R - chr3R 12538241 intron Octbeta3R - chr3R 12538325 intron Octbeta3R - chr3R_6_12535001 chr3R_12535001 RAL-142 1831 chr3R 12598997 12599028 chr3R 12599143 12599186 10 148 9.0 3.0 6.0 1.4 189 chr3R 12598997 intergenic not near genes chr3R 12599092 intergenic not near genes chr3R 12599186 intergenic not near genes chr3R_10_12595001 chr3R_12595001 RAL-142 1832 chr3R 12606916 12606944 chr3R 12607210 12607269 8 313 3.0 1.5 2.2 2.5 353 chr3R 12606916 intergenic not near genes chr3R 12607092 intergenic not near genes chr3R 12607269 intergenic not near genes chr3R_8_12605001 chr3R_12605001 RAL-142 1833 chr3R 12666738 12666802 chr3R 12666898 12666899 22 149 9.0 6.5 7.8 2.5 161 chr3R 12666738 intron CG14395 + chr3R 12666818 intron CG14395 + chr3R 12666899 intron CG14395 + chr3R_22_12665001 chr3R_12665001 RAL-142 1834 chr3R 12717969 12718017 chr3R 12718143 12718188 12 163 3.0 3.5 3.2 2.9 219 chr3R 12717969 intron Men - chr3R 12718078 intron Men - chr3R 12718188 intron Men - chr3R_12_12715001 chr3R_12715001 RAL-142 1835 chr3R 10451877 10451877 chr3R 12722496 12722496 4 2270619 17.5 14.5 16.0 0.2 2270619 chr3R 10451877 intergenic not near genes chr3R 11587186 exon CG6791 - chr3R 12722496 intergenic Men - chr3R_4_11585001 chr3R_11585001 RAL-142 1836 chr3R 12733474 12733501 chr3R 12733551 12733597 7 92 3.0 6.0 4.5 1.3 123 chr3R 12733474 intergenic not near genes chr3R 12733536 intergenic not near genes chr3R 12733597 intergenic not near genes chr3R_7_12730001 chr3R_12730001 RAL-142 1837 chr3R 12787924 12787942 chr3R 12788040 12788055 5 117 2.0 4.0 3.0 1.2 131 chr3R 12787924 intergenic not near genes chr3R 12787990 intergenic not near genes chr3R 12788055 intergenic not near genes chr3R_5_12785001 chr3R_12785001 RAL-142 1838 chr3R 12866453 12866511 chr3R 12866639 12866697 9 186 2.5 3.0 2.8 2.4 244 chr3R 12866453 intergenic not near genes chr3R 12866575 intergenic not near genes chr3R 12866697 intergenic not near genes chr3R_9_12865001 chr3R_12865001 RAL-142 1839 chr3R 12920142 12920164 chr3R 12925363 12925401 copia 4 5226 2.5 2.0 2.2 1.2 5259 chr3R 12920142 intron beat-Vb + chr3R 12922772 intron beat-Vb + chr3R 12925401 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-142 1840 chr3R 12926561 12926612 chr3R 12926683 12926734 8 122 4.5 1.0 2.8 2.1 173 chr3R 12926561 intron beat-Vb + chr3R 12926648 intron beat-Vb + chr3R 12926734 intron beat-Vb + chr3R_8_12925001 chr3R_12925001 RAL-142 1841 chr3R 13059944 13059976 chr3R 13060161 13060206 11 223 2.5 3.0 2.8 2.9 262 chr3R 13059944 intron sim + chr3R 13060075 intron sim + chr3R 13060206 intron sim + chr3R_11_13060001 chr3R_13060001 RAL-142 1842 chr3R 13066972 13067009 chr3R 13067094 13067131 8 119 1.0 2.5 1.8 2.9 159 chr3R 13066972 intron sim + chr3R 13067052 intron sim + chr3R 13067131 intron sim + chr3R_8_13065001 chr3R_13065001 RAL-142 1843 chr3R 13067822 13067863 chr3R 13067917 13067948 9 90 1.0 1.0 1.0 4.5 126 chr3R 13067822 intron sim + chr3R 13067885 intron sim + chr3R 13067948 intron sim + chr3R_9_13065001 chr3R_13065001 RAL-142 1844 chr3R 13075329 13075389 chr3R 13075445 13075505 12 107 4.5 4.5 4.5 2.2 176 chr3R 13075329 intron sim + chr3R 13075417 intron sim + chr3R 13075505 intron sim + chr3R_12_13075001 chr3R_13075001 RAL-142 1845 chr3R 13104419 13104420 chr3R 21907534 21907534 14 8803115 29.5 13.0 21.2 0.6 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_14_17505001 chr3R_17505001 RAL-142 1846 chr3R 13135807 13135839 chr3R 13138007 13138039 pogo 6 2198 2.5 2.5 2.5 1.7 2232 chr3R 13135807 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136923 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138039 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 RAL-142 1847 chr3R 13138281 13138352 chr3R 13138410 13138435 5 100 0.5 1.5 1.0 2.5 154 chr3R 13138281 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138358 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138435 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-142 1848 chr3R 13143035 13143059 chr3R 13148623 13148650 mdg3 4 5584 1.0 2.5 1.8 1.4 5615 chr3R 13143035 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148650 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-142 1849 chr3R 13314091 13314123 chr3R 13318897 13318946 Doc 5 4814 1.0 4.0 2.5 1.4 4855 chr3R 13314091 intergenic not near genes chr3R 13316518 intergenic not near genes chr3R 13318946 intergenic CG45080 - chr3R_5_13315001 chr3R_13315001 RAL-142 1850 chr3R 13435369 13435412 chr3R 13435562 13435622 13 203 7.5 2.0 4.8 2.2 253 chr3R 13435369 intergenic yrt - chr3R 13435496 intergenic not near genes chr3R 13435622 intergenic not near genes chr3R_13_13435001 chr3R_13435001 RAL-142 1851 chr3R 13517229 13517256 chr3R 13520081 13520094 jockey 9 2847 2.0 3.0 2.5 2.6 2865 chr3R 13517229 intergenic not near genes chr3R 13518662 intergenic not near genes chr3R 13520094 intergenic not near genes chr3R_9_13515001 chr3R_13515001 RAL-142 1852 chr3R 13598091 13598110 chr3R 13598164 13598219 6 96 2.0 2.5 2.2 1.9 128 chr3R 13598091 intergenic not near genes chr3R 13598155 intergenic not near genes chr3R 13598219 intergenic not near genes chr3R_6_13595001 chr3R_13595001 RAL-142 1853 chr3R 13603025 13603077 chr3R 13603145 13603200 13 122 4.0 4.5 4.2 2.5 175 chr3R 13603025 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603200 intergenic not near genes chr3R_13_13600001 chr3R_13600001 RAL-142 1854 chr3R 13625658 13625697 chr3R 13625774 13625813 4 114 4.5 1.5 3.0 1.0 155 chr3R 13625658 intergenic not near genes chr3R 13625736 intergenic not near genes chr3R 13625813 intergenic not near genes chr3R_4_13625001 chr3R_13625001 RAL-142 1855 chr3R 13693028 13693028 chr3R 21907534 21907536 13 8214507 30.5 13.0 21.8 0.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_13_17800001 chr3R_17800001 RAL-142 1856 chr3R 13714495 13714551 chr3R 13714663 13714725 22 172 0.5 7.0 3.8 4.6 230 chr3R 13714495 intergenic CR34044 - chr3R 13714610 intergenic CR34044 - chr3R 13714725 intergenic CG34383 + chr3R_22_13710001 chr3R_13710001 RAL-142 1857 chr3R 13731407 13731433 chr3R 13731505 13731546 11 109 2.5 6.5 4.5 2.0 139 chr3R 13731407 intron CG34383 + chr3R 13731476 intron CG34383 + chr3R 13731546 intron CG34383 + chr3R_11_13730001 chr3R_13730001 RAL-142 1858 chr3R 13863659 13863711 chr3R 13863766 13863819 8 110 4.0 6.0 5.0 1.3 160 chr3R 13863659 intergenic not near genes chr3R 13863739 intergenic not near genes chr3R 13863819 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-142 1859 chr3R 14021614 14021678 chr3R 14023466 14023529 S-element 11 1847 3.0 5.5 4.2 2.1 1915 chr3R 14021614 intron rdx - chr3R 14022572 intron rdx - chr3R 14023529 intron rdx - chr3R_11_14020001 chr3R_14020001 RAL-142 1860 chr3R 14067108 14067156 chr3R 14067221 14067270 14 109 1.5 3.5 2.5 4.0 162 chr3R 14067108 exon foxo + chr3R 14067189 intron foxo + chr3R 14067270 intron foxo + chr3R_14_14065001 chr3R_14065001 RAL-142 1861 chr3R 14083374 14083408 chr3R 14083505 14083544 7 133 3.5 0.0 1.8 2.5 170 chr3R 14083374 intron foxo + chr3R 14083459 intron foxo + chr3R 14083544 intron foxo + chr3R_7_14080001 chr3R_14080001 RAL-142 1862 chr3R 14170128 14170164 chr3R 14170253 14170277 4 117 2.0 2.0 2.0 1.3 149 chr3R 14170128 3` UTR Dop1R1 - chr3R 14170202 3` UTR Dop1R1 - chr3R 14170277 3` UTR Dop1R1 - chr3R_4_14170001 chr3R_14170001 RAL-142 1863 chr3R 14180781 14180842 chr3R 14185581 14185642 F-element 9 4800 5.0 0.5 2.8 2.4 4861 chr3R 14180781 intron Dop1R1 - chr3R 14183212 intron Dop1R1 - chr3R 14185642 intron Dop1R1 - chr3R_9_14180001 chr3R_14180001 RAL-142 1864 chr3R 14211304 14211361 chr3R 14211417 14211474 10 109 2.5 4.0 3.2 2.4 170 chr3R 14211304 intron Dop1R1 - chr3R 14211389 intron Dop1R1 - chr3R 14211474 intron Dop1R1 - chr3R_10_14210001 chr3R_14210001 RAL-142 1865 chr3R 14248701 14248735 chr3R 14248809 14248848 6 107 0.5 1.0 0.8 3.3 147 chr3R 14248701 intergenic not near genes chr3R 14248774 intergenic not near genes chr3R 14248848 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-142 1866 chr3R 14278396 14278446 chr3R 14278513 14278563 12 116 4.0 4.5 4.2 2.3 167 chr3R 14278396 intron trx - chr3R 14278480 intron trx - chr3R 14278563 intron trx - chr3R_12_14275001 chr3R_14275001 RAL-142 1867 chr3R 14295121 14295183 chr3R 14295268 14295330 7 142 1.0 2.5 1.8 2.5 209 chr3R 14295121 intron CG12207 + chr3R 14295226 intron CG12207 + chr3R 14295330 intron CG12207 + chr3R_7_14295001 chr3R_14295001 RAL-142 1868 chr3R 14354778 14354839 chr3R 14354902 14354964 12 124 0.0 5.5 2.8 3.2 186 chr3R 14354778 intron NK7.1 - chr3R 14354871 intron NK7.1 - chr3R 14354964 intron NK7.1 - chr3R_12_14350001 chr3R_14350001 RAL-142 1869 chr3R 14408506 14408528 chr3R 14408629 14408632 5 119 8.0 3.5 5.8 0.7 126 chr3R 14408506 intron cv-c - chr3R 14408569 intron cv-c - chr3R 14408632 intron cv-c - chr3R_5_14405001 chr3R_14405001 RAL-142 1870 chr3R 14440694 14440752 chr3R 14440805 14440863 10 106 2.0 2.5 2.2 3.1 169 chr3R 14440694 intron cv-c - chr3R 14440778 intron cv-c - chr3R 14440863 intron cv-c - chr3R_10_14440001 chr3R_14440001 RAL-142 1871 chr3R 14458845 14458898 chr3R 14458961 14458994 16 111 7.5 5.5 6.5 2.1 149 chr3R 14458845 intron cv-c - chr3R 14458920 intron cv-c - chr3R 14458994 intron cv-c - chr3R_16_14455001 chr3R_14455001 RAL-142 1872 chr3R 14527380 14527412 chr3R 14527479 14527520 12 95 5.5 3.5 4.5 2.2 140 chr3R 14527380 intron Pde6 - chr3R 14527450 intron Pde6 - chr3R 14527520 intron Pde6 - chr3R_12_14525001 chr3R_14525001 RAL-142 1873 chr3R 14546036 14546062 chr3R 14546122 14546162 7 104 3.5 0.0 1.8 2.5 126 chr3R 14546036 intron Pde6 - chr3R 14546099 intron Pde6 - chr3R 14546162 intron Pde6 - chr3R_7_14545001 chr3R_14545001 RAL-142 1874 chr3R 14554557 14554588 chr3R 14554651 14554708 4 114 6.0 0.0 3.0 1.0 151 chr3R 14554557 intron Pde6 - chr3R 14554632 intron Pde6 - chr3R 14554708 intron Pde6 - chr3R_4_14550001 chr3R_14550001 RAL-142 1875 chr3R 14608438 14608475 chr3R 14608565 14608601 8 122 2.5 3.5 3.0 2.0 163 chr3R 14608438 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608601 intergenic not near genes chr3R_8_14605001 chr3R_14605001 RAL-142 1876 chr3R 14736676 14736719 chr3R 14737007 14737050 5 327 4.0 4.0 4.0 1.0 374 chr3R 14736676 intron eff - chr3R 14736863 intron eff - chr3R 14737050 intron eff - chr3R_5_14735001 chr3R_14735001 RAL-142 1877 chr3R 14760518 14760539 chr3R 14760626 14760656 4 114 1.0 0.5 0.8 2.2 138 chr3R 14760518 intron jvl + chr3R 14760587 intron jvl + chr3R 14760656 intron jvl + chr3R_4_14760001 chr3R_14760001 RAL-142 1878 chr3R 14821583 14821598 chr3R 14821766 14821782 5 184 16.5 6.5 11.5 0.4 199 chr3R 14821583 intron btsz - chr3R 14821682 intron btsz - chr3R 14821782 intron btsz - chr3R_5_14820001 chr3R_14820001 RAL-142 1879 chr3R 14821601 14821646 chr3R 14821765 14821829 27 179 5.5 6.5 6.0 3.9 228 chr3R 14821601 intron btsz - chr3R 14821715 intron btsz - chr3R 14821829 intron btsz - chr3R_27_14820001 chr3R_14820001 RAL-142 1880 chr3R 14878407 14878471 chr3R 14879279 14879330 24 863 6.0 5.0 5.5 3.7 923 chr3R 14878407 intergenic not near genes chr3R 14878868 intergenic not near genes chr3R 14879330 intergenic CG3631 + chr3R_24_14875001 chr3R_14875001 RAL-142 1881 chr3R 14898439 14898501 chr3R 14898594 14898654 21 152 8.0 1.0 4.5 3.8 215 chr3R 14898439 intergenic Nup93-2 -,CG3817 + chr3R 14898546 intergenic Nup93-2 -,CG3817 + chr3R 14898654 intergenic CG3817 +,Nup93-2 - chr3R_21_14895001 chr3R_14895001 RAL-142 1882 chr3R 14923693 14923746 chr3R 14923787 14923826 12 102 6.0 9.0 7.5 1.4 133 chr3R 14923693 3` UTR CR45598 - chr3R 14923760 3` UTR CR45598 - chr3R 14923826 intergenic CR45598 - chr3R_12_14920001 chr3R_14920001 RAL-142 1883 chr3R 14959578 14959608 chr3R 14959670 14959695 4 100 0.0 0.5 0.2 3.3 117 chr3R 14959578 intergenic not near genes chr3R 14959636 intergenic not near genes chr3R 14959695 intergenic not near genes chr3R_4_14955001 chr3R_14955001 RAL-142 1884 chr3R 15026301 15026306 chr3R 15026422 15026427 5 121 11.0 4.0 7.5 0.6 126 chr3R 15026301 intergenic not near genes chr3R 15026364 intergenic not near genes chr3R 15026427 intergenic not near genes chr3R_5_15025001 chr3R_15025001 RAL-142 1885 chr3R 15026309 15026326 chr3R 15026420 15026447 5 118 9.5 4.0 6.8 0.6 138 chr3R 15026309 intergenic not near genes chr3R 15026378 intergenic not near genes chr3R 15026447 intergenic not near genes chr3R_5_15025001 chr3R_15025001 RAL-142 1886 chr3R 15041410 15041449 chr3R 15045213 15045252 Doc 4 3799 0.0 1.5 0.8 2.2 3842 chr3R 15041410 intergenic not near genes chr3R 15043331 intergenic not near genes chr3R 15045252 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-142 1887 chr3R 15079785 15079839 chr3R 15080047 15080080 pogo 9 260 2.5 2.0 2.2 2.8 295 chr3R 15079785 3` UTR CG6966 - chr3R 15079932 3` UTR CG6966 - chr3R 15080080 3` UTR CG6966 - chr3R_9_15075001 chr3R_15075001 RAL-142 1888 chr3R 15102467 15102481 chr3R 15109759 15109773 412 6 7292 9.5 8.5 9.0 0.6 7306 chr3R 15102467 intron CG42788 - chr3R 15106120 intron CG42788 - chr3R 15109773 intron CG42788 - chr3R_6_15105001 chr3R_15105001 RAL-142 1889 chr3R 15102491 15102525 chr3R 15109754 15109815 412 17 7287 3.5 7.5 5.5 2.6 7324 chr3R 15102491 intron CG42788 - chr3R 15106153 intron CG42788 - chr3R 15109815 intron CG42788 - chr3R_17_15105001 chr3R_15105001 RAL-142 1890 chr3R 15132033 15132076 chr3R 15135128 15135156 Juan 11 3091 6.0 10.5 8.2 1.2 3123 chr3R 15132033 intergenic CG42788 - chr3R 15133594 intergenic not near genes chr3R 15135156 3` UTR CG6912 - chr3R_11_15130001 chr3R_15130001 RAL-142 1891 chr3R 15143886 15143955 chr3R 15144104 15144173 18 218 3.5 7.0 5.2 2.9 287 chr3R 15143886 intron GlyS - chr3R 15144030 intron GlyS - chr3R 15144173 intron GlyS - chr3R_18_15140001 chr3R_15140001 RAL-142 1892 chr3R 15265374 15265434 chr3R 15265493 15265554 15 115 6.0 4.5 5.2 2.4 180 chr3R 15265374 intergenic Set +,Oscp + chr3R 15265464 intergenic Oscp +,Set + chr3R 15265554 intergenic Oscp +,Set + chr3R_15_15265001 chr3R_15265001 RAL-142 1893 chr3R 15406111 15406171 chr3R 15406227 15406242 18 108 9.5 1.5 5.5 2.8 131 chr3R 15406111 intron CG6125 - chr3R 15406176 intron CG6125 - chr3R 15406242 intron CG6125 - chr3R_18_15405001 chr3R_15405001 RAL-142 1894 chr3R 15445879 15445905 chr3R 15445999 15446025 15 120 5.0 0.5 2.8 3.9 146 chr3R 15445879 exon AdamTS-A - chr3R 15445952 intron AdamTS-A - chr3R 15446025 intron AdamTS-A - chr3R_15_15445001 chr3R_15445001 RAL-142 1895 chr3R 15516137 15516178 chr3R 15516372 15516399 10 229 4.0 13.0 8.5 1.1 262 chr3R 15516137 intergenic not near genes chr3R 15516268 intergenic not near genes chr3R 15516399 intergenic not near genes chr3R_10_15515001 chr3R_15515001 RAL-142 1896 chr3R 15516179 15516182 chr3R 15516368 15516401 6 211 3.5 10.5 7.0 0.8 222 chr3R 15516179 intergenic not near genes chr3R 15516290 intergenic not near genes chr3R 15516401 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-142 1897 chr3R 15566165 15566187 chr3R 15566245 15566285 8 79 4.0 5.0 4.5 1.5 120 chr3R 15566165 intergenic not near genes chr3R 15566225 intergenic not near genes chr3R 15566285 intergenic not near genes chr3R_8_15565001 chr3R_15565001 RAL-142 1898 chr3R 15601138 15601185 chr3R 15608695 15608722 412 9 7541 8.0 2.5 5.2 1.5 7584 chr3R 15601138 intergenic not near genes chr3R 15604930 intergenic not near genes chr3R 15608722 intergenic not near genes chr3R_9_15600001 chr3R_15600001 RAL-142 1899 chr3R 15635174 15635238 chr3R 15635330 15635377 7 152 0.0 0.0 0.0 7.0 203 chr3R 15635174 intergenic CG43335 + chr3R 15635276 intergenic CG43335 + chr3R 15635377 intergenic CG43335 + chr3R_7_15635001 chr3R_15635001 RAL-142 1900 chr3R 15691173 15691330 chr3R 15691301 15691419 10 123 0.0 0.0 0.0 10.0 246 chr3R 15691173 intergenic not near genes chr3R 15691296 intergenic not near genes chr3R 15691419 intergenic not near genes chr3R_10_15690001 chr3R_15690001 RAL-142 1901 chr3R 15702846 15702887 chr3R 15703054 15703075 4 207 0.0 1.0 0.5 2.7 229 chr3R 15702846 intergenic not near genes chr3R 15702960 intergenic not near genes chr3R 15703075 intergenic not near genes chr3R_4_15700001 chr3R_15700001 RAL-142 1902 chr3R 15752260 15752272 chr3R 15752383 15752395 5 123 7.5 6.0 6.8 0.6 135 chr3R 15752260 intergenic not near genes chr3R 15752328 intergenic not near genes chr3R 15752395 intergenic not near genes chr3R_5_15750001 chr3R_15750001 RAL-142 1903 chr3R 15752278 15752304 chr3R 15752373 15752383 10 96 1.5 3.5 2.5 2.9 105 chr3R 15752278 intergenic not near genes chr3R 15752330 intergenic not near genes chr3R 15752383 intergenic not near genes chr3R_10_15750001 chr3R_15750001 RAL-142 1904 chr3R 15813313 15813330 chr3R 15813408 15813420 4 100 4.5 0.5 2.5 1.1 107 chr3R 15813313 intron alpha-Man-IIb + chr3R 15813366 intron alpha-Man-IIb + chr3R 15813420 intron alpha-Man-IIb + chr3R_4_15810001 chr3R_15810001 RAL-142 1905 chr3R 15868905 15868945 chr3R 15869020 15869025 7 108 10.0 0.0 5.0 1.2 120 chr3R 15868905 intron CG31183 - chr3R 15868965 intron CG31183 - chr3R 15869025 intron CG31183 - chr3R_7_15865001 chr3R_15865001 RAL-142 1906 chr3R 15878055 15878096 chr3R 15878178 15878201 9 120 2.0 5.5 3.8 1.9 146 chr3R 15878055 intergenic not near genes chr3R 15878128 intergenic not near genes chr3R 15878201 intergenic not near genes chr3R_9_15875001 chr3R_15875001 RAL-142 1907 chr3R 16033381 16033430 chr3R 16033492 16033546 13 115 4.0 6.5 5.2 2.1 165 chr3R 16033381 intron pnr + chr3R 16033464 intron pnr + chr3R 16033546 intron pnr + chr3R_13_16030001 chr3R_16030001 RAL-142 1908 chr3R 16124690 16124728 chr3R 16124788 16124811 13 102 5.0 5.5 5.2 2.1 121 chr3R 16124690 intron Sb + chr3R 16124750 intron Sb + chr3R 16124811 intron Sb + chr3R_13_16120001 chr3R_16120001 RAL-142 1909 chr3R 16165004 16165036 chr3R 16165092 16165154 12 99 5.0 11.5 8.2 1.3 150 chr3R 16165004 intron CG6006 + chr3R 16165079 intron CG6006 + chr3R 16165154 intron CG6006 + chr3R_12_16165001 chr3R_16165001 RAL-142 1910 chr3R 16246544 16246553 chr3R 16246640 16246654 4 103 1.0 12.5 6.8 0.5 110 chr3R 16246544 intron tara + chr3R 16246599 intron tara + chr3R 16246654 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-142 1911 chr3R 16253501 16253568 chr3R 16253622 16253687 12 119 1.5 6.0 3.8 2.5 186 chr3R 16253501 intron tara + chr3R 16253594 intron tara + chr3R 16253687 intron tara + chr3R_12_16250001 chr3R_16250001 RAL-142 1912 chr3R 16275572 16275604 chr3R 16275898 16275926 6 331 3.5 2.5 3.0 1.5 354 chr3R 16275572 intron gish + chr3R 16275749 intron gish + chr3R 16275926 intron gish + chr3R_6_16275001 chr3R_16275001 RAL-142 1913 chr3R 16374271 16374282 chr3R 16374423 16374434 6 151 7.5 4.5 6.0 0.9 163 chr3R 16374271 intergenic ss - chr3R 16374352 intergenic ss - chr3R 16374434 3` UTR ss - chr3R_6_16370001 chr3R_16370001 RAL-142 1914 chr3R 16374288 16374325 chr3R 16374418 16374477 10 143 2.5 3.5 3.0 2.5 189 chr3R 16374288 intergenic ss - chr3R 16374382 intergenic ss - chr3R 16374477 3` UTR ss - chr3R_10_16370001 chr3R_16370001 RAL-142 1915 chr3R 16582874 16582906 chr3R 16582987 16582998 4 108 7.5 8.5 8.0 0.4 124 chr3R 16582874 intron Scp2 - chr3R 16582936 intron Scp2 - chr3R 16582998 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-142 1916 chr3R 16731902 16732071 chr3R 16732011 16732180 19 103 0.0 2.5 1.2 8.6 278 chr3R 16731902 intron Ubx - chr3R 16732041 intron Ubx - chr3R 16732180 intron Ubx - chr3R_19_16730001 chr3R_16730001 RAL-142 1917 chr3R 16756304 16756350 chr3R 16762512 16762556 diver 9 6211 1.0 0.0 0.5 6.0 6252 chr3R 16756304 intron bxd - chr3R 16759430 intron bxd - chr3R 16762556 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-142 1918 chr3R 17047295 17047351 chr3R 17047423 17047469 18 121 3.5 3.5 3.5 4.0 174 chr3R 17047295 3` UTR Patr-1 + chr3R 17047382 3` UTR Patr-1 + chr3R 17047469 3` UTR Patr-1 + chr3R_18_17045001 chr3R_17045001 RAL-142 1919 chr3R 17101111 17101127 chr3R 17101226 17101235 4 113 3.0 0.0 1.5 1.6 124 chr3R 17101111 intron cher - chr3R 17101173 intron cher - chr3R 17101235 intron cher - chr3R_4_17100001 chr3R_17100001 RAL-142 1920 chr3R 17234924 17234987 chr3R 17235099 17235121 22 161 4.0 1.5 2.8 5.8 197 chr3R 17234924 intron beat-IIb - chr3R 17235022 intron beat-IIb - chr3R 17235121 intron beat-IIb - chr3R_22_17235001 chr3R_17235001 RAL-142 1921 chr3R 17289475 17289491 chr3R 17289551 17289595 4 94 3.0 4.5 3.8 0.8 120 chr3R 17289475 intergenic not near genes chr3R 17289535 intergenic not near genes chr3R 17289595 intergenic not near genes chr3R_4_17285001 chr3R_17285001 RAL-142 1922 chr3R 17294653 17294693 chr3R 17295105 17295147 BS 9 458 0.5 4.5 2.5 2.6 494 chr3R 17294653 intergenic not near genes chr3R 17294900 intergenic not near genes chr3R 17295147 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-142 1923 chr3R 17312783 17312849 chr3R 17312903 17312938 13 102 2.0 0.0 1.0 6.5 155 chr3R 17312783 intergenic not near genes chr3R 17312860 intergenic not near genes chr3R 17312938 intergenic not near genes chr3R_13_17310001 chr3R_17310001 RAL-142 1924 chr3R 17316687 17316721 chr3R 17316882 17316910 4 193 3.5 7.5 5.5 0.6 223 chr3R 17316687 intergenic not near genes chr3R 17316798 intergenic not near genes chr3R 17316910 intergenic not near genes chr3R_4_17315001 chr3R_17315001 RAL-142 1925 chr3R 17346661 17346711 chr3R 17348259 17348309 F-element 8 1595 2.5 2.5 2.5 2.3 1648 chr3R 17346661 intron beat-IIa - chr3R 17347485 intron beat-IIa - chr3R 17348309 intron beat-IIa - chr3R_8_17345001 chr3R_17345001 RAL-142 1926 chr3R 17355475 17355510 chr3R 17355569 17355618 5 100 4.5 2.5 3.5 1.1 143 chr3R 17355475 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355618 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-142 1927 chr3R 17366132 17366173 chr3R 17366236 17366279 8 100 2.5 1.5 2.0 2.7 147 chr3R 17366132 intergenic beat-IIa - chr3R 17366206 intergenic beat-IIa - chr3R 17366279 intergenic beat-IIa - chr3R_8_17365001 chr3R_17365001 RAL-142 1928 chr3R 17371386 17371423 chr3R 17371480 17371495 5 78 13.0 4.5 8.8 0.5 109 chr3R 17371386 3` UTR CR44256 - chr3R 17371440 3` UTR CR44256 - chr3R 17371495 3` UTR CR44256 - chr3R_5_17370001 chr3R_17370001 RAL-142 1929 chr3R 17461168 17461227 chr3R 17461283 17461344 8 116 1.0 1.5 1.2 3.6 176 chr3R 17461168 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461344 intergenic not near genes chr3R_8_17460001 chr3R_17460001 RAL-142 1930 chr3R 17463137 17463179 chr3R 17463257 17463288 4 114 1.0 3.5 2.2 1.2 151 chr3R 17463137 intergenic not near genes chr3R 17463212 intergenic not near genes chr3R 17463288 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-142 1931 chr3R 17497941 17497989 chr3R 17498049 17498110 18 116 1.5 5.5 3.5 4.0 169 chr3R 17497941 intron Dscam3 - chr3R 17498026 intron Dscam3 - chr3R 17498110 intron Dscam3 - chr3R_18_17495001 chr3R_17495001 RAL-142 1932 chr3R 17500584 17500633 chr3R 17500735 17500780 15 159 4.5 9.5 7.0 1.9 196 chr3R 17500584 intron Dscam3 - chr3R 17500682 intron Dscam3 - chr3R 17500780 intron Dscam3 - chr3R_15_17500001 chr3R_17500001 RAL-142 1933 chr3R 17638292 17638338 chr3R 17638811 17638859 roo 16 518 4.5 4.0 4.2 3.1 567 chr3R 17638292 intron CG43175 + chr3R 17638576 intron CG43175 + chr3R 17638859 intron,intron CG43175 +,CR45222 + chr3R_16_17635001 chr3R_17635001 RAL-142 1934 chr3R 17647211 17647272 chr3R 17647342 17647388 10 121 0.5 2.0 1.2 4.5 177 chr3R 17647211 intergenic CG14322 + chr3R 17647300 intergenic CG14322 + chr3R 17647388 intergenic CG14322 + chr3R_10_17645001 chr3R_17645001 RAL-142 1935 chr3R 17726218 17726273 chr3R 17726333 17726381 27 114 1.5 8.0 4.8 4.7 163 chr3R 17726218 intron Lgr1 + chr3R 17726300 intron Lgr1 + chr3R 17726381 intron Lgr1 + chr3R_27_17725001 chr3R_17725001 RAL-142 1936 chr3R 17734817 17734858 chr3R 17734966 17735007 13 148 5.5 0.0 2.8 3.4 190 chr3R 17734817 intergenic CG14321 + chr3R 17734912 intergenic not near genes chr3R 17735007 intergenic not near genes chr3R_13_17730001 chr3R_17730001 RAL-142 1937 chr3R 17773358 17773392 chr3R 17773472 17773490 5 111 1.5 7.0 4.2 1.0 132 chr3R 17773358 exon CG43102 - chr3R 17773424 intron CG43102 - chr3R 17773490 exon CG43102 - chr3R_5_17770001 chr3R_17770001 RAL-142 1938 chr3R 17812058 17812120 chr3R 17812167 17812231 12 105 3.5 2.5 3.0 3.0 173 chr3R 17812058 intron tinc + chr3R 17812144 intron tinc + chr3R 17812231 intron tinc + chr3R_12_17810001 chr3R_17810001 RAL-142 1939 chr3R 17895353 17895377 chr3R 17895461 17895488 13 119 5.5 10.0 7.8 1.5 135 chr3R 17895353 intron Rim - chr3R 17895420 intron Rim - chr3R 17895488 intron Rim - chr3R_13_17895001 chr3R_17895001 RAL-142 1940 chr3R 17899073 17899079 chr3R 17899167 17899174 4 102 5.0 7.0 6.0 0.6 101 chr3R 17899073 intron Rim - chr3R 17899124 intron Rim - chr3R 17899174 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-142 1941 chr3R 17925864 17925874 chr3R 17927351 17927351 hobo 4 1484 1.0 5.0 3.0 1.0 1487 chr3R 17925864 intron cpo + chr3R 17926608 intron cpo + chr3R 17927351 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-142 1942 chr3R 17968074 17968132 chr3R 17968184 17968228 6 103 4.5 3.0 3.8 1.2 154 chr3R 17968074 intron cpo + chr3R 17968151 intron cpo + chr3R 17968228 intron cpo + chr3R_6_17965001 chr3R_17965001 RAL-142 1943 chr3R 18030459 18030480 chr3R 18030561 18030590 5 114 1.5 3.0 2.2 1.6 131 chr3R 18030459 intergenic not near genes chr3R 18030524 intergenic not near genes chr3R 18030590 intergenic not near genes chr3R_5_18030001 chr3R_18030001 RAL-142 1944 chr3R 18061560 18061606 chr3R 18063163 18063174 F-element 13 1595 4.0 7.5 5.8 1.9 1614 chr3R 18061560 intergenic not near genes chr3R 18062367 intergenic not near genes chr3R 18063174 intergenic not near genes chr3R_13_18060001 chr3R_18060001 RAL-142 1945 chr3R 18112338 18112386 chr3R 18112456 18112504 6 115 5.5 1.0 3.2 1.4 166 chr3R 18112338 intron sr + chr3R 18112421 intron sr + chr3R 18112504 intron sr + chr3R_6_18110001 chr3R_18110001 RAL-142 1946 chr3R 18122854 18122914 chr3R 18122967 18123008 6 106 3.0 0.0 1.5 2.4 154 chr3R 18122854 intron sr + chr3R 18122931 intron sr + chr3R 18123008 intron sr + chr3R_6_18120001 chr3R_18120001 RAL-142 1947 chr3R 18143546 18143575 chr3R 18143670 18143695 5 123 1.0 5.0 3.0 1.2 149 chr3R 18143546 intergenic not near genes chr3R 18143620 intergenic not near genes chr3R 18143695 intergenic not near genes chr3R_5_18140001 chr3R_18140001 RAL-142 1948 chr3R 18191380 18191423 chr3R 18191480 18191497 20 98 4.0 7.5 5.8 2.9 117 chr3R 18191380 exon CG14313 - chr3R 18191438 exon CG14313 - chr3R 18191497 intron CG14313 - chr3R_20_18190001 chr3R_18190001 RAL-142 1949 chr3R 18203701 18203713 chr3R 18203792 18203808 4 98 9.0 5.5 7.2 0.5 107 chr3R 18203701 intron CG7985 + chr3R 18203754 intron CG7985 + chr3R 18203808 intron CG7985 + chr3R_4_18200001 chr3R_18200001 RAL-142 1950 chr3R 18215743 18215771 chr3R 18215933 18215975 10 194 1.5 4.5 3.0 2.5 232 chr3R 18215743 intergenic CG14314 + chr3R 18215859 intergenic CG14314 + chr3R 18215975 intergenic CG14314 + chr3R_10_18215001 chr3R_18215001 RAL-142 1951 chr3R 18342010 18342041 chr3R 18342090 18342105 6 87 1.5 2.5 2.0 2.0 95 chr3R 18342010 intron CG15803 - chr3R 18342058 intron CG15803 - chr3R 18342105 intron CG15803 - chr3R_6_18340001 chr3R_18340001 RAL-142 1952 chr3R 18374525 18374546 chr3R 18374716 18374760 10 200 0.0 9.0 4.5 1.8 235 chr3R 18374525 intergenic CR44946 + chr3R 18374642 5` UTR CR44946 + chr3R 18374760 5` UTR CR44946 + chr3R_10_18370001 chr3R_18370001 RAL-142 1953 chr3R 18414825 18414883 chr3R 18414937 18414975 20 108 3.0 2.0 2.5 5.7 150 chr3R 18414825 3` UTR fru - chr3R 18414900 3` UTR fru - chr3R 18414975 3` UTR fru - chr3R_20_18410001 chr3R_18410001 RAL-142 1954 chr3R 18438392 18438435 chr3R 18438506 18438517 8 106 7.5 5.0 6.2 1.1 125 chr3R 18438392 intron fru - chr3R 18438454 intron fru - chr3R 18438517 intron fru - chr3R_8_18435001 chr3R_18435001 RAL-142 1955 chr3R 18472249 18472293 chr3R 18472385 18472429 8 134 2.5 4.5 3.5 1.8 180 chr3R 18472249 intron fru - chr3R 18472339 intron fru - chr3R 18472429 intron fru - chr3R_8_18470001 chr3R_18470001 RAL-142 1956 chr3R 18473230 18473248 chr3R 18473351 18473354 4 114 0.0 11.5 5.8 0.6 124 chr3R 18473230 intron fru - chr3R 18473292 intron fru - chr3R 18473354 intron fru - chr3R_4_18470001 chr3R_18470001 RAL-142 1957 chr3R 18485297 18485352 chr3R 18485432 18485453 7 126 0.5 3.0 1.8 2.5 156 chr3R 18485297 intron fru - chr3R 18485375 intron fru - chr3R 18485453 intron fru - chr3R_7_18485001 chr3R_18485001 RAL-142 1958 chr3R 18695742 18695783 chr3R 18695849 18695855 4 98 4.5 0.0 2.2 1.2 113 chr3R 18695742 3` UTR CG34282 + chr3R 18695798 intergenic CG34282 + chr3R 18695855 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-142 1959 chr3R 18729992 18730036 chr3R 18730103 18730130 5 106 6.0 7.0 6.5 0.7 138 chr3R 18729992 exon Cha + chr3R 18730061 intron Cha + chr3R 18730130 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-142 1960 chr3R 18807294 18807330 chr3R 18807405 18807423 19 108 3.5 0.0 1.8 6.8 129 chr3R 18807294 intron CG18208 - chr3R 18807358 intron CG18208 - chr3R 18807423 intron CG18208 - chr3R_19_18805001 chr3R_18805001 RAL-142 1961 chr3R 18812067 18812106 chr3R 18812170 18812203 8 107 3.0 5.0 4.0 1.6 136 chr3R 18812067 intron CG18208 - chr3R 18812135 intron CG18208 - chr3R 18812203 intron CG18208 - chr3R_8_18810001 chr3R_18810001 RAL-142 1962 chr3R 18826154 18826198 chr3R 18826278 18826306 6 124 2.0 4.0 3.0 1.5 152 chr3R 18826154 intron CG18208 - chr3R 18826230 intron CG18208 - chr3R 18826306 intron CG18208 - chr3R_6_18825001 chr3R_18825001 RAL-142 1963 chr3R 18839793 18839819 chr3R 18839901 18839908 6 108 0.5 4.0 2.2 1.9 115 chr3R 18839793 intron CG18208 - chr3R 18839850 intron CG18208 - chr3R 18839908 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-142 1964 chr3R 19107540 19107588 chr3R 19107636 19107640 4 76 0.0 0.5 0.2 3.3 100 chr3R 19107540 intron CG6040 + chr3R 19107590 intron CG6040 + chr3R 19107640 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-142 1965 chr3R 19136408 19136456 chr3R 19139783 19139808 Bari1 6 3374 18.0 25.5 21.8 0.3 3400 chr3R 19136408 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139808 3` UTR Ppcs - chr3R_6_19135001 chr3R_19135001 RAL-142 1966 chr3R 19140262 19140268 chr3R 19140715 19140741 4 463 8.5 3.5 6.0 0.6 479 chr3R 19140262 3` UTR Ppcs - chr3R 19140502 3` UTR Ppcs - chr3R 19140741 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-142 1967 chr3R 19140271 19140299 chr3R 19140714 19140747 8 457 2.5 3.5 3.0 2.0 476 chr3R 19140271 3` UTR Ppcs - chr3R 19140509 3` UTR Ppcs - chr3R 19140747 3` UTR Ppcs - chr3R_8_19140001 chr3R_19140001 RAL-142 1968 chr3R 19159931 19159962 chr3R 19160045 19160076 4 114 4.0 2.5 3.2 1.0 145 chr3R 19159931 3` UTR nos + chr3R 19160004 3` UTR nos + chr3R 19160076 3` UTR nos + chr3R_4_19160001 chr3R_19160001 RAL-142 1969 chr3R 19310750 19310779 chr3R 19310867 19310888 4 112 6.5 6.0 6.2 0.6 138 chr3R 19310750 intron Dl - chr3R 19310819 intron Dl - chr3R 19310888 intron Dl - chr3R_4_19310001 chr3R_19310001 RAL-142 1970 chr3R 19320566 19320586 chr3R 19320679 19320691 7 114 8.5 8.0 8.2 0.8 125 chr3R 19320566 intron Dl - chr3R 19320628 intron Dl - chr3R 19320691 intron Dl - chr3R_7_19320001 chr3R_19320001 RAL-142 1971 chr3R 19320595 19320610 chr3R 19320677 19320703 9 110 5.0 6.5 5.8 1.3 108 chr3R 19320595 intron Dl - chr3R 19320649 intron Dl - chr3R 19320703 intron Dl - chr3R_9_19320001 chr3R_19320001 RAL-142 1972 chr3R 19340366 19340427 chr3R 19340478 19340536 11 109 3.0 3.5 3.2 2.6 170 chr3R 19340366 intergenic not near genes chr3R 19340451 intergenic not near genes chr3R 19340536 intergenic not near genes chr3R_11_19340001 chr3R_19340001 RAL-142 1973 chr3R 19418397 19418432 chr3R 19418524 19418559 7 127 4.0 0.5 2.2 2.2 162 chr3R 19418397 intron CG31221 + chr3R 19418478 intron CG31221 + chr3R 19418559 intron CG31221 + chr3R_7_19415001 chr3R_19415001 RAL-142 1974 chr3R 19582129 19582187 chr3R 19582241 19582268 13 108 1.5 3.5 2.5 3.7 139 chr3R 19582129 intron Dys + chr3R 19582198 intron Dys + chr3R 19582268 intron Dys + chr3R_13_19580001 chr3R_19580001 RAL-142 1975 chr3R 19602725 19602789 chr3R 19602838 19602901 15 109 3.0 4.0 3.5 3.3 176 chr3R 19602725 intergenic CG7333 + chr3R 19602813 intergenic CG7333 + chr3R 19602901 intergenic CG7333 +,CG7342 + chr3R_15_19600001 chr3R_19600001 RAL-142 1976 chr3R 19673953 19673984 chr3R 19674057 19674114 6 123 2.5 2.5 2.5 1.7 161 chr3R 19673953 intron Naam + chr3R 19674034 intron Naam + chr3R 19674114 intron Naam + chr3R_6_19670001 chr3R_19670001 RAL-142 1977 chr3R 19702305 19702355 chr3R 19702402 19702432 12 95 3.0 2.5 2.8 3.2 127 chr3R 19702305 intergenic not near genes chr3R 19702368 intergenic not near genes chr3R 19702432 intergenic not near genes chr3R_12_19700001 chr3R_19700001 RAL-142 1978 chr3R 19716202 19716219 chr3R 19716314 19716331 4 112 4.5 0.0 2.2 1.2 129 chr3R 19716202 intergenic CG34286 - chr3R 19716266 intergenic CG34286 - chr3R 19716331 intergenic CG34286 - chr3R_4_19715001 chr3R_19715001 RAL-142 1979 chr3R 19734006 19734011 chr3R 19734119 19734124 4 112 2.0 8.0 5.0 0.7 118 chr3R 19734006 intron GluClalpha + chr3R 19734065 intron GluClalpha + chr3R 19734124 intron GluClalpha + chr3R_4_19730001 chr3R_19730001 RAL-142 1980 chr3R 19750019 19750067 chr3R 19750124 19750182 8 106 2.5 1.5 2.0 2.7 163 chr3R 19750019 intron GluClalpha + chr3R 19750100 intron GluClalpha + chr3R 19750182 intron GluClalpha + chr3R_8_19750001 chr3R_19750001 RAL-142 1981 chr3R 19782992 19783008 chr3R 19783144 19783159 7 151 4.5 5.5 5.0 1.2 167 chr3R 19782992 exon CG11407 + chr3R 19783076 3` UTR CG11407 + chr3R 19783159 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-142 1982 chr3R 19783023 19783041 chr3R 19783124 19783193 7 145 2.0 1.5 1.8 2.5 170 chr3R 19783023 exon CG11407 + chr3R 19783108 3` UTR CG11407 + chr3R 19783193 intergenic CG11407 +,CG11453 + chr3R_7_19780001 chr3R_19780001 RAL-142 1983 chr3R 19908239 19908290 chr3R 19908358 19908369 6 108 0.0 3.5 1.8 2.1 130 chr3R 19908239 intron RhoGAP92B + chr3R 19908304 intron RhoGAP92B + chr3R 19908369 intron RhoGAP92B + chr3R_6_19905001 chr3R_19905001 RAL-142 1984 chr3R 19912189 19912241 chr3R 19912301 19912319 15 106 8.0 7.5 7.8 1.7 130 chr3R 19912189 intron RhoGAP92B + chr3R 19912254 intron RhoGAP92B + chr3R 19912319 exon RhoGAP92B + chr3R_15_19910001 chr3R_19910001 RAL-142 1985 chr3R 19955323 19955377 chr3R 19955448 19955513 4 132 1.0 1.5 1.2 1.8 190 chr3R 19955323 intron Hs6st - chr3R 19955418 intron Hs6st - chr3R 19955513 intron Hs6st - chr3R_4_19955001 chr3R_19955001 RAL-142 1986 chr3R 20066089 20066147 chr3R 20066314 20066371 7 219 1.5 0.5 1.0 3.5 282 chr3R 20066089 intergenic not near genes chr3R 20066230 intergenic not near genes chr3R 20066371 intergenic not near genes chr3R_7_20065001 chr3R_20065001 RAL-142 1987 chr3R 20066531 20066576 chr3R 20066786 20066828 6 254 2.0 2.5 2.2 1.9 297 chr3R 20066531 intergenic not near genes chr3R 20066680 intergenic not near genes chr3R 20066828 intergenic not near genes chr3R_6_20065001 chr3R_20065001 RAL-142 1988 chr3R 20109508 20109561 chr3R 20114749 20114801 copia 5 5237 1.0 2.5 1.8 1.8 5293 chr3R 20109508 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114801 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-142 1989 chr3R 20124544 20124578 chr3R 20124657 20124697 6 111 4.5 2.5 3.5 1.3 153 chr3R 20124544 intergenic not near genes chr3R 20124620 intergenic not near genes chr3R 20124697 intergenic not near genes chr3R_6_20120001 chr3R_20120001 RAL-142 1990 chr3R 20156682 20156710 chr3R 20165868 20165869 roo 5 9189 1.5 0.5 1.0 2.5 9187 chr3R 20156682 intergenic not near genes chr3R 20161276 intergenic not near genes chr3R 20165869 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-142 1991 chr3R 20188789 20188809 chr3R 20188910 20188922 7 120 3.5 4.5 4.0 1.4 133 chr3R 20188789 intergenic not near genes chr3R 20188856 intergenic not near genes chr3R 20188922 intergenic not near genes chr3R_7_20185001 chr3R_20185001 RAL-142 1992 chr3R 20188820 20188839 chr3R 20188899 20188937 8 97 1.0 4.0 2.5 2.3 117 chr3R 20188820 intergenic not near genes chr3R 20188878 intergenic not near genes chr3R 20188937 intergenic not near genes chr3R_8_20185001 chr3R_20185001 RAL-142 1993 chr3R 20205555 20205594 chr3R 20205702 20205744 8 154 3.0 2.5 2.8 2.1 189 chr3R 20205555 intron Nlg4 + chr3R 20205650 intron Nlg4 + chr3R 20205744 intron Nlg4 + chr3R_8_20205001 chr3R_20205001 RAL-142 1994 chr3R 18372498 18372501 chr3R 20220587 20220588 5 1848088 13.5 18.5 16.0 0.3 1848090 chr3R 18372498 intron gl - chr3R 19296543 intergenic not near genes chr3R 20220588 intron Nlg4 + chr3R_5_19295001 chr3R_19295001 RAL-142 1995 chr3R 20231442 20231456 chr3R 20231588 20231600 5 147 22.0 16.5 19.2 0.2 158 chr3R 20231442 intron Nlg4 + chr3R 20231521 intron Nlg4 + chr3R 20231600 intron Nlg4 + chr3R_5_20230001 chr3R_20230001 RAL-142 1996 chr3R 20245259 20245301 chr3R 20248901 20248940 F-element 14 3643 6.0 0.5 3.2 3.3 3681 chr3R 20245259 3` UTR Nlg4 + chr3R 20247100 intergenic not near genes chr3R 20248940 intergenic not near genes chr3R_14_20245001 chr3R_20245001 RAL-142 1997 chr3R 20258653 20258680 chr3R 20258750 20258788 5 103 1.0 0.5 0.8 2.8 135 chr3R 20258653 intron cic + chr3R 20258720 intron cic + chr3R 20258788 intron cic + chr3R_5_20255001 chr3R_20255001 RAL-142 1998 chr3R 20266484 20266540 chr3R 20272990 20273040 Burdock 13 6499 2.5 6.0 4.2 2.5 6556 chr3R 20266484 intron cic + chr3R 20269762 intron cic + chr3R 20273040 intron cic + chr3R_13_20265001 chr3R_20265001 RAL-142 1999 chr3R 20282242 20282305 chr3R 20282352 20282416 10 106 0.0 1.0 0.5 6.7 174 chr3R 20282242 intron cic + chr3R 20282329 intron cic + chr3R 20282416 intron cic + chr3R_10_20280001 chr3R_20280001 RAL-142 2000 chr3R 20330969 20331012 chr3R 20331490 20331522 roo 13 520 4.0 5.5 4.8 2.2 553 chr3R 20330969 intergenic Sirt2 + chr3R 20331246 intergenic Sirt2 + chr3R 20331522 intergenic not near genes chr3R_13_20330001 chr3R_20330001 RAL-142 2001 chr3R 20389660 20389702 chr3R 20389777 20389819 12 113 4.5 4.5 4.5 2.2 159 chr3R 20389660 intron Gfrl - chr3R 20389740 intron Gfrl - chr3R 20389819 intron Gfrl - chr3R_12_20385001 chr3R_20385001 RAL-142 2002 chr3R 20389716 20389725 chr3R 20389776 20389842 5 84 3.5 4.5 4.0 1.0 126 chr3R 20389716 intron Gfrl - chr3R 20389779 intron Gfrl - chr3R 20389842 intron Gfrl - chr3R_5_20385001 chr3R_20385001 RAL-142 2003 chr3R 20411378 20411390 chr3R 20411677 20411689 5 298 9.5 5.5 7.5 0.6 311 chr3R 20411378 intron Gfrl - chr3R 20411534 intron Gfrl - chr3R 20411689 intron Gfrl - chr3R_5_20410001 chr3R_20410001 RAL-142 2004 chr3R 20411392 20411422 chr3R 20411675 20411721 10 292 5.0 5.0 5.0 1.7 329 chr3R 20411392 intron Gfrl - chr3R 20411556 intron Gfrl - chr3R 20411721 intron Gfrl - chr3R_10_20410001 chr3R_20410001 RAL-142 2005 chr3R 20433067 20433132 chr3R 20433192 20433252 20 122 7.0 7.0 7.0 2.5 185 chr3R 20433067 intron Gfrl - chr3R 20433160 intron Gfrl - chr3R 20433252 intron Gfrl - chr3R_20_20430001 chr3R_20430001 RAL-142 2006 chr3R 20443134 20443179 chr3R 20443291 20443319 7 146 1.5 3.0 2.2 2.2 185 chr3R 20443134 intron Gfrl - chr3R 20443226 intron Gfrl - chr3R 20443319 intron Gfrl - chr3R_7_20440001 chr3R_20440001 RAL-142 2007 chr3R 20476509 20476526 chr3R 20476650 20476670 8 145 7.0 6.0 6.5 1.1 161 chr3R 20476509 intron Gfrl - chr3R 20476590 intron Gfrl - chr3R 20476670 intron Gfrl - chr3R_8_20475001 chr3R_20475001 RAL-142 2008 chr3R 20506580 20506599 chr3R 20507398 20507437 BS 5 825 0.0 7.5 3.8 1.0 857 chr3R 20506580 intergenic Or92a + chr3R 20507008 intergenic CG4288 - chr3R 20507437 3` UTR CG4288 - chr3R_5_20505001 chr3R_20505001 RAL-142 2009 chr3R 20512975 20512999 chr3R 20515712 20515737 opus 10 2736 13.5 3.5 8.5 1.1 2762 chr3R 20512975 intergenic not near genes chr3R 20514356 intergenic not near genes chr3R 20515737 intergenic not near genes chr3R_10_20510001 chr3R_20510001 RAL-142 2010 chr3R 20513000 20513034 chr3R 20515707 20515772 opus 10 2733 6.5 2.5 4.5 1.8 2772 chr3R 20513000 intergenic not near genes chr3R 20514386 intergenic not near genes chr3R 20515772 intergenic not near genes chr3R_10_20510001 chr3R_20510001 RAL-142 2011 chr3R 20585910 20585939 chr3R 20586020 20586021 9 112 0.0 0.0 0.0 9.0 111 chr3R 20585910 intergenic CG16953 -,Sep2 - chr3R 20585966 intergenic CG16953 -,Sep2 - chr3R 20586021 intergenic Sep2 -,CG16953 - chr3R_9_20585001 chr3R_20585001 RAL-142 2012 chr3R 20594452 20594511 chr3R 20594577 20594620 11 120 4.5 0.0 2.2 3.4 168 chr3R 20594452 intron bon + chr3R 20594536 intron bon + chr3R 20594620 intron bon + chr3R_11_20590001 chr3R_20590001 RAL-142 2013 chr3R 20617466 20617513 chr3R 20617772 20617802 4 301 1.5 3.0 2.2 1.2 336 chr3R 20617466 intergenic CG5466 + chr3R 20617634 intergenic CG5466 + chr3R 20617802 intergenic CG5466 + chr3R_4_20615001 chr3R_20615001 RAL-142 2014 chr3R 20684194 20684236 chr3R 20684313 20684354 13 119 8.5 7.0 7.8 1.5 160 chr3R 20684194 intergenic not near genes chr3R 20684274 intergenic not near genes chr3R 20684354 intergenic not near genes chr3R_13_20680001 chr3R_20680001 RAL-142 2015 chr3R 20697972 20698021 chr3R 20698101 20698132 13 120 7.5 2.0 4.8 2.2 160 chr3R 20697972 intron Oamb - chr3R 20698052 intron Oamb - chr3R 20698132 intron Oamb - chr3R_13_20695001 chr3R_20695001 RAL-142 2016 chr3R 20703458 20703510 chr3R 20703887 20703918 5 420 1.5 5.0 3.2 1.2 460 chr3R 20703458 intron Oamb - chr3R 20703688 intron Oamb - chr3R 20703918 intron Oamb - chr3R_5_20700001 chr3R_20700001 RAL-142 2017 chr3R 20722846 20722882 chr3R 20722992 20723014 8 144 4.0 3.5 3.8 1.7 168 chr3R 20722846 intergenic not near genes chr3R 20722930 intergenic not near genes chr3R 20723014 intergenic not near genes chr3R_8_20720001 chr3R_20720001 RAL-142 2018 chr3R 20787408 20787453 chr3R 20787530 20787579 6 125 4.5 5.0 4.8 1.0 171 chr3R 20787408 intron Syp + chr3R 20787494 intron Syp + chr3R 20787579 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-142 2019 chr3R 20848340 20848357 chr3R 20848448 20848482 4 121 0.0 4.5 2.2 1.2 142 chr3R 20848340 intergenic not near genes chr3R 20848411 intergenic not near genes chr3R 20848482 intergenic not near genes chr3R_4_20845001 chr3R_20845001 RAL-142 2020 chr3R 20850056 20850112 chr3R 20850176 20850222 15 115 0.0 2.0 1.0 7.5 166 chr3R 20850056 intergenic RpS30 + chr3R 20850139 intergenic RpS30 + chr3R 20850222 intergenic RpS30 + chr3R_15_20850001 chr3R_20850001 RAL-142 2021 chr3R 20854439 20854518 chr3R 20859269 20859298 Doc 6 4805 1.0 3.0 2.0 2.0 4859 chr3R 20854439 intron Ir93a - chr3R 20856868 intron Ir93a - chr3R 20859298 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-142 2022 chr3R 20899895 20899940 chr3R 20900026 20900071 8 131 1.5 4.0 2.8 2.1 176 chr3R 20899895 intergenic not near genes chr3R 20899983 intergenic not near genes chr3R 20900071 intergenic not near genes chr3R_8_20895001 chr3R_20895001 RAL-142 2023 chr3R 20938872 20938938 chr3R 20938994 20939026 9 107 0.5 2.0 1.2 4.1 154 chr3R 20938872 intron CG31191 - chr3R 20938949 intron CG31191 - chr3R 20939026 intron CG31191 - chr3R_9_20935001 chr3R_20935001 RAL-142 2024 chr3R 20942793 20942842 chr3R 20942888 20942923 9 98 2.5 2.5 2.5 2.6 130 chr3R 20942793 intron CG31191 - chr3R 20942858 intron CG31191 - chr3R 20942923 intron CG31191 - chr3R_9_20940001 chr3R_20940001 RAL-142 2025 chr3R 21108014 21108018 chr3R 21108305 21108314 6 294 8.5 3.0 5.8 0.9 300 chr3R 21108014 intergenic Sec15 -,rtet + chr3R 21108164 intergenic Sec15 -,rtet + chr3R 21108314 intergenic rtet +,Sec15 - chr3R_6_21105001 chr3R_21105001 RAL-142 2026 chr3R 21108019 21108059 chr3R 21108304 21108338 10 287 3.5 2.5 3.0 2.5 319 chr3R 21108019 intergenic Sec15 -,rtet + chr3R 21108178 intergenic Sec15 -,rtet + chr3R 21108338 intergenic rtet +,Sec15 - chr3R_10_21105001 chr3R_21105001 RAL-142 2027 chr3R 21132607 21132646 chr3R 21132719 21132764 10 114 6.0 0.0 3.0 2.5 157 chr3R 21132607 3` UTR Ice2 + chr3R 21132686 3` UTR Ice2 + chr3R 21132764 exon CG7009 - chr3R_10_21130001 chr3R_21130001 RAL-142 2028 chr3R 21141681 21141693 chr3R 21150162 21150208 Tirant 5 8494 5.0 3.5 4.2 1.0 8527 chr3R 21141681 intron SNF4Agamma + chr3R 21145944 intron SNF4Agamma + chr3R 21150208 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-142 2029 chr3R 21150786 21150836 chr3R 21150956 21151002 17 167 3.0 4.0 3.5 3.8 216 chr3R 21150786 intron SNF4Agamma + chr3R 21150894 intron SNF4Agamma + chr3R 21151002 intron SNF4Agamma + chr3R_17_21150001 chr3R_21150001 RAL-142 2030 chr3R 21154533 21154573 chr3R 21154758 21154823 21 246 6.5 0.5 3.5 4.7 290 chr3R 21154533 intron SNF4Agamma + chr3R 21154678 intron SNF4Agamma + chr3R 21154823 intron SNF4Agamma + chr3R_21_21150001 chr3R_21150001 RAL-142 2031 chr3R 21176807 21176814 chr3R 21176909 21176917 4 102 10.5 7.0 8.8 0.4 110 chr3R 21176807 intron SNF4Agamma + chr3R 21176862 intron SNF4Agamma + chr3R 21176917 intron SNF4Agamma + chr3R_4_21175001 chr3R_21175001 RAL-142 2032 chr3R 21176819 21176839 chr3R 21176893 21176941 9 100 3.5 5.0 4.2 1.7 122 chr3R 21176819 intron SNF4Agamma + chr3R 21176880 intron SNF4Agamma + chr3R 21176941 intron SNF4Agamma + chr3R_9_21175001 chr3R_21175001 RAL-142 2033 chr3R 21214679 21214696 chr3R 21214794 21214812 4 112 10.5 0.0 5.2 0.6 133 chr3R 21214679 intergenic CG5862 + chr3R 21214746 intergenic CG5862 + chr3R 21214812 intergenic CG5862 + chr3R_4_21210001 chr3R_21210001 RAL-142 2034 chr3R 21240423 21240472 chr3R 21240550 21240593 16 122 2.0 4.0 3.0 4.0 170 chr3R 21240423 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240593 intergenic not near genes chr3R_16_21240001 chr3R_21240001 RAL-142 2035 chr3R 21293170 21293223 chr3R 21293316 21293370 24 143 9.0 8.0 8.5 2.5 200 chr3R 21293170 intron SIFaR - chr3R 21293270 intron SIFaR - chr3R 21293370 intron SIFaR - chr3R_24_21290001 chr3R_21290001 RAL-142 2036 chr3R 21385683 21385957 chr3R 21385775 21386016 10 93 4.0 0.0 2.0 3.3 333 chr3R 21385683 intergenic not near genes chr3R 21385850 intergenic not near genes chr3R 21386016 intergenic not near genes chr3R_10_21385001 chr3R_21385001 RAL-142 2037 chr3R 21392079 21392106 chr3R 21392200 21392228 6 132 6.0 3.5 4.8 1.0 149 chr3R 21392079 intergenic not near genes chr3R 21392154 intergenic not near genes chr3R 21392228 intergenic not near genes chr3R_6_21390001 chr3R_21390001 RAL-142 2038 chr3R 21433132 21433196 chr3R 21433258 21433292 21 119 3.0 6.0 4.5 3.8 160 chr3R 21433132 intron lbl - chr3R 21433212 intron lbl - chr3R 21433292 exon lbl - chr3R_21_21430001 chr3R_21430001 RAL-142 2039 chr3R 21451654 21451720 chr3R 21455361 21455392 13 3707 24.0 35.0 29.5 0.4 3738 chr3R 21451654 intergenic not near genes chr3R 21453523 intergenic not near genes chr3R 21455392 intergenic not near genes chr3R_13_21450001 chr3R_21450001 RAL-142 2040 chr3R 21464375 21464388 chr3R 21464496 21464509 4 121 7.0 3.0 5.0 0.7 134 chr3R 21464375 intergenic not near genes chr3R 21464442 intergenic not near genes chr3R 21464509 intergenic not near genes chr3R_4_21460001 chr3R_21460001 RAL-142 2041 chr3R 21464399 21464429 chr3R 21464491 21464548 7 115 3.0 2.5 2.8 1.8 149 chr3R 21464399 intergenic not near genes chr3R 21464474 intergenic not near genes chr3R 21464548 intergenic not near genes chr3R_7_21460001 chr3R_21460001 RAL-142 2042 chr3R 21471988 21472027 chr3R 21472104 21472143 15 111 11.5 8.5 10.0 1.4 155 chr3R 21471988 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472143 intergenic not near genes chr3R_15_21470001 chr3R_21470001 RAL-142 2043 chr3R 21519953 21519975 chr3R 21520089 21520111 9 134 9.5 0.0 4.8 1.6 158 chr3R 21519953 intergenic not near genes chr3R 21520032 intergenic not near genes chr3R 21520111 intergenic not near genes chr3R_9_21520001 chr3R_21520001 RAL-142 2044 chr3R 21519977 21520124 chr3R 21520088 21520253 17 128 0.0 0.0 0.0 17.0 276 chr3R 21519977 intergenic not near genes chr3R 21520115 intergenic not near genes chr3R 21520253 intergenic not near genes chr3R_17_21520001 chr3R_21520001 RAL-142 2045 chr3R 21532746 21532861 chr3R 21532861 21532958 4 110 0.0 0.0 0.0 4.0 212 chr3R 21532746 3` UTR CR43372 - chr3R 21532852 intron CR43372 - chr3R 21532958 3` UTR CR43372 - chr3R_4_21530001 chr3R_21530001 RAL-142 2046 chr3R 21725668 21725684 chr3R 21725839 21725855 8 171 0.0 10.5 5.2 1.3 187 chr3R 21725668 intergenic not near genes chr3R 21725762 intergenic not near genes chr3R 21725855 intergenic not near genes chr3R_8_21725001 chr3R_21725001 RAL-142 2047 chr3R 21731767 21731830 chr3R 21731910 21731954 8 138 2.5 0.0 1.2 3.6 187 chr3R 21731767 intergenic not near genes chr3R 21731860 intergenic not near genes chr3R 21731954 intergenic not near genes chr3R_8_21730001 chr3R_21730001 RAL-142 2048 chr3R 21761099 21761150 chr3R 21768512 21768536 mdg1 17 7405 5.0 6.0 5.5 2.6 7437 chr3R 21761099 exon CG42335 + chr3R 21764818 intron CG42335 + chr3R 21768536 exon CG42335 + chr3R_17_21760001 chr3R_21760001 RAL-142 2049 chr3R 21784843 21784870 chr3R 21784976 21784983 4 127 7.0 0.0 3.5 0.9 140 chr3R 21784843 3` UTR,3` UTR CASK -,CRG - chr3R 21784913 3` UTR,3` UTR CASK -,CRG - chr3R 21784983 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-142 2050 chr3R 21800481 21800515 chr3R 21800574 21800630 4 112 0.0 3.0 1.5 1.6 149 chr3R 21800481 intron CASK - chr3R 21800556 intron CASK - chr3R 21800630 intron CASK - chr3R_4_21800001 chr3R_21800001 RAL-142 2051 chr3R 21820439 21820485 chr3R 21820573 21820612 5 117 4.0 3.0 3.5 1.1 173 chr3R 21820439 intron CASK - chr3R 21820526 intron CASK - chr3R 21820612 intron CASK - chr3R_5_21820001 chr3R_21820001 RAL-142 2052 chr3R 21883940 21883972 chr3R 21884052 21884085 5 113 0.5 3.0 1.8 1.8 145 chr3R 21883940 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884012 intron,3` UTR CR45046 -,fit - chr3R 21884085 3` UTR,exon CR45046 -,fit - chr3R_5_21880001 chr3R_21880001 RAL-142 2053 chr3R 8339246 8339246 chr3R 21907534 21907534 4 13568288 31.0 13.0 22.0 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-142 2054 chr3R 21907534 21907534 chr3R 28831801 28831802 22 6924268 12.5 19.5 16.0 1.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-142 2055 chr3R 21907535 21907535 chr3R 26659333 26659337 7 4751800 12.5 13.0 12.8 0.5 4751802 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-142 2056 chr3R 21907535 21907535 chr3R 28831801 28831803 40 6924267 12.5 19.5 16.0 2.4 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_40_25365001 chr3R_25365001 RAL-142 2057 chr3R 21907536 21907536 chr3R 26659333 26659337 7 4751798 13.0 13.0 13.0 0.5 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-142 2058 chr3R 21907536 21907536 chr3R 28831801 28831826 45 6924266 13.0 19.5 16.2 2.6 6924290 chr3R 21907536 intergenic CG6678 + chr3R 25369681 intron Fur1 - chr3R 28831826 5` UTR WASp - chr3R_45_25365001 chr3R_25365001 RAL-142 2059 chr3R 21931999 21932040 chr3R 21932120 21932160 6 110 2.0 1.0 1.5 2.4 161 chr3R 21931999 intergenic not near genes chr3R 21932080 intergenic not near genes chr3R 21932160 intergenic not near genes chr3R_6_21930001 chr3R_21930001 RAL-142 2060 chr3R 21937197 21937234 chr3R 21937308 21937308 7 100 1.5 4.0 2.8 1.8 111 chr3R 21937197 intergenic not near genes chr3R 21937252 intergenic not near genes chr3R 21937308 intergenic not near genes chr3R_7_21935001 chr3R_21935001 RAL-142 2061 chr3R 21952114 21952164 chr3R 21952219 21952280 16 110 5.5 3.0 4.2 3.1 166 chr3R 21952114 intron Eip93F + chr3R 21952197 intron Eip93F + chr3R 21952280 intron Eip93F + chr3R_16_21950001 chr3R_21950001 RAL-142 2062 chr3R 21989082 21989133 chr3R 21989238 21989292 4 157 2.5 0.0 1.2 1.8 210 chr3R 21989082 intron Eip93F + chr3R 21989187 intron Eip93F + chr3R 21989292 intron Eip93F + chr3R_4_21985001 chr3R_21985001 RAL-142 2063 chr3R 22084609 22084626 chr3R 22084712 22084750 8 115 0.0 7.5 3.8 1.7 141 chr3R 22084609 intergenic not near genes chr3R 22084680 intergenic not near genes chr3R 22084750 intergenic not near genes chr3R_8_22080001 chr3R_22080001 RAL-142 2064 chr3R 22099640 22099686 chr3R 22099792 22099831 6 142 2.0 2.5 2.2 1.9 191 chr3R 22099640 intron CG5778 - chr3R 22099736 intron CG5778 - chr3R 22099831 intron CG5778 - chr3R_6_22095001 chr3R_22095001 RAL-142 2065 chr3R 22234656 22234710 chr3R 22236007 22236062 pogo 10 1343 2.0 1.0 1.5 4.0 1406 chr3R 22234656 intron SKIP + chr3R 22235359 intron SKIP + chr3R 22236062 intron SKIP + chr3R_10_22235001 chr3R_22235001 RAL-142 2066 chr3R 22450513 22450579 chr3R 22453188 22453221 NOF 13 2658 3.0 7.5 5.2 2.1 2708 chr3R 22450513 intron CG34376 + chr3R 22451867 intron CG34376 + chr3R 22453221 intron CG34376 + chr3R_13_22450001 chr3R_22450001 RAL-142 2067 chr3R 22499828 22499832 chr3R 22499903 22499942 5 86 0.0 5.5 2.8 1.3 114 chr3R 22499828 intron Octbeta1R + chr3R 22499885 intron Octbeta1R + chr3R 22499942 intron Octbeta1R + chr3R_5_22495001 chr3R_22495001 RAL-142 2068 chr3R 22507761 22507813 chr3R 22507879 22507932 9 110 6.0 4.5 5.2 1.5 171 chr3R 22507761 intron Octbeta1R + chr3R 22507846 intron Octbeta1R + chr3R 22507932 intron Octbeta1R + chr3R_9_22505001 chr3R_22505001 RAL-142 2069 chr3R 22700092 22700155 chr3R 22700210 22700274 27 116 0.5 5.0 2.8 7.1 182 chr3R 22700092 3` UTR Cyp6d4 + chr3R 22700183 3` UTR Cyp6d4 + chr3R 22700274 3` UTR Cyp6d4 + chr3R_27_22700001 chr3R_22700001 RAL-142 2070 chr3R 22881194 22881219 chr3R 22884935 22884959 Doc 7 3738 5.0 7.5 6.2 1.0 3765 chr3R 22881194 intergenic not near genes chr3R 22883076 intergenic not near genes chr3R 22884959 intergenic not near genes chr3R_7_22880001 chr3R_22880001 RAL-142 2071 chr3R 22974269 22974308 chr3R 22974388 22974421 9 114 0.5 4.0 2.2 2.8 152 chr3R 22974269 intergenic not near genes chr3R 22974345 intergenic not near genes chr3R 22974421 intergenic not near genes chr3R_9_22970001 chr3R_22970001 RAL-142 2072 chr3R 22993478 22993529 chr3R 22993648 22993688 9 157 8.0 8.5 8.2 1.0 210 chr3R 22993478 intron Nha2 - chr3R 22993583 intron Nha2 - chr3R 22993688 intron Nha2 - chr3R_9_22990001 chr3R_22990001 RAL-142 2073 chr3R 23011351 23011407 chr3R 23011482 23011501 12 125 5.5 8.0 6.8 1.5 150 chr3R 23011351 intergenic not near genes chr3R 23011426 intergenic CR44225 - chr3R 23011501 intergenic CR44225 - chr3R_12_23010001 chr3R_23010001 RAL-142 2074 chr3R 23070623 23070700 chr3R 23070738 23070813 14 115 0.0 0.0 0.0 14.0 190 chr3R 23070623 3` UTR CG13830 - chr3R 23070718 3` UTR CG13830 - chr3R 23070813 3` UTR CG13830 - chr3R_14_23070001 chr3R_23070001 RAL-142 2075 chr3R 23073655 23073687 chr3R 23073742 23073789 17 96 6.5 1.0 3.8 3.5 134 chr3R 23073655 intron CG13830 - chr3R 23073722 intron CG13830 - chr3R 23073789 intron CG13830 - chr3R_17_23070001 chr3R_23070001 RAL-142 2076 chr3R 23234814 23234838 chr3R 23234926 23234950 11 110 7.5 5.5 6.5 1.5 136 chr3R 23234814 intron CG4467 - chr3R 23234882 intron CG4467 - chr3R 23234950 intron CG4467 - chr3R_11_23230001 chr3R_23230001 RAL-142 2077 chr3R 23324010 23324049 chr3R 23324127 23324170 8 113 2.0 3.0 2.5 2.3 160 chr3R 23324010 intron pnt - chr3R 23324090 intron pnt - chr3R 23324170 intron pnt - chr3R_8_23320001 chr3R_23320001 RAL-142 2078 chr3R 23338869 23338916 chr3R 23338972 23339007 8 91 3.5 3.5 3.5 1.8 138 chr3R 23338869 intron pnt - chr3R 23338938 intron pnt - chr3R 23339007 intron pnt - chr3R_8_23335001 chr3R_23335001 RAL-142 2079 chr3R 23346535 23346574 chr3R 23346649 23346671 7 108 9.0 7.0 8.0 0.8 136 chr3R 23346535 intergenic pnt - chr3R 23346603 intergenic pnt - chr3R 23346671 intergenic not near genes chr3R_7_23345001 chr3R_23345001 RAL-142 2080 chr3R 23390930 23390941 chr3R 23391047 23391049 4 115 8.5 0.0 4.2 0.8 119 chr3R 23390930 intergenic CR43387 + chr3R 23390990 intergenic CR43387 + chr3R 23391049 intergenic CR43387 + chr3R_4_23390001 chr3R_23390001 RAL-142 2081 chr3R 23397040 23397074 chr3R 23397143 23397166 5 106 2.0 4.0 3.0 1.2 126 chr3R 23397040 intergenic not near genes chr3R 23397103 intergenic not near genes chr3R 23397166 intergenic not near genes chr3R_5_23395001 chr3R_23395001 RAL-142 2082 chr3R 23453657 23453670 chr3R 23453771 23453784 4 110 10.0 8.5 9.2 0.4 127 chr3R 23453657 intron CG4374 - chr3R 23453720 intron CG4374 - chr3R 23453784 intron CG4374 - chr3R_4_23450001 chr3R_23450001 RAL-142 2083 chr3R 23453676 23453702 chr3R 23453759 23453816 15 109 5.0 7.0 6.0 2.1 140 chr3R 23453676 intron CG4374 - chr3R 23453746 intron CG4374 - chr3R 23453816 intron CG4374 - chr3R_15_23450001 chr3R_23450001 RAL-142 2084 chr3R 23543285 23543304 chr3R 23543397 23543404 9 108 7.5 3.0 5.2 1.5 119 chr3R 23543285 intergenic not near genes chr3R 23543344 intergenic not near genes chr3R 23543404 intergenic not near genes chr3R_9_23540001 chr3R_23540001 RAL-142 2085 chr3R 23543305 23543334 chr3R 23543384 23543402 8 99 2.0 2.0 2.0 2.7 97 chr3R 23543305 intergenic not near genes chr3R 23543354 intergenic not near genes chr3R 23543402 intergenic not near genes chr3R_8_23540001 chr3R_23540001 RAL-142 2086 chr3R 23558367 23558429 chr3R 23560183 23560230 Bari1 9 1811 2.5 2.5 2.5 2.6 1863 chr3R 23558367 intron beat-IV + chr3R 23559298 intron beat-IV + chr3R 23560230 intron beat-IV + chr3R_9_23555001 chr3R_23555001 RAL-142 2087 chr3R 23564412 23564475 chr3R 23564591 23564641 14 174 4.0 3.5 3.8 2.9 229 chr3R 23564412 intron beat-IV + chr3R 23564526 intron beat-IV + chr3R 23564641 intron beat-IV + chr3R_14_23560001 chr3R_23560001 RAL-142 2088 chr3R 23574883 23574945 chr3R 23575566 23575609 27 673 6.0 5.0 5.5 4.2 726 chr3R 23574883 intron beat-IV + chr3R 23575246 intron beat-IV + chr3R 23575609 intron beat-IV + chr3R_27_23575001 chr3R_23575001 RAL-142 2089 chr3R 23575648 23575713 chr3R 23575771 23575817 12 118 2.5 4.0 3.2 2.9 169 chr3R 23575648 intron beat-IV + chr3R 23575732 intron beat-IV + chr3R 23575817 intron beat-IV + chr3R_12_23575001 chr3R_23575001 RAL-142 2090 chr3R 23627715 23627754 chr3R 23627832 23627865 6 109 7.0 0.0 3.5 1.3 150 chr3R 23627715 intron CG31145 - chr3R 23627790 intron CG31145 - chr3R 23627865 intron CG31145 - chr3R_6_23625001 chr3R_23625001 RAL-142 2091 chr3R 23684680 23684717 chr3R 23685189 23685213 roo 9 497 7.5 4.5 6.0 1.3 533 chr3R 23684680 exon CG18754 + chr3R 23684946 intron CG18754 + chr3R 23685213 exon CG18754 + chr3R_9_23680001 chr3R_23680001 RAL-142 2092 chr3R 23688455 23688477 chr3R 23688564 23688590 4 112 7.5 0.5 4.0 0.8 135 chr3R 23688455 intergenic SPE + chr3R 23688522 intergenic SPE +,CG10254 - chr3R 23688590 intergenic CG10254 -,SPE + chr3R_4_23685001 chr3R_23685001 RAL-142 2093 chr3R 23835386 23835429 chr3R 23844556 23844614 roo 10 9181 2.0 1.0 1.5 4.0 9228 chr3R 23835386 intron CG34355 + chr3R 23840000 intron CG34355 + chr3R 23844614 intron CG34355 + chr3R_10_23835001 chr3R_23835001 RAL-142 2094 chr3R 23851059 23851084 chr3R 23858756 23858786 opus 8 7700 3.5 7.5 5.5 1.2 7727 chr3R 23851059 3` UTR CG34355 + chr3R 23854922 intergenic not near genes chr3R 23858786 intergenic not near genes chr3R_8_23850001 chr3R_23850001 RAL-142 2095 chr3R 23859008 23859063 chr3R 23859136 23859191 10 126 2.5 1.0 1.8 3.6 183 chr3R 23859008 intergenic not near genes chr3R 23859100 intergenic not near genes chr3R 23859191 intergenic not near genes chr3R_10_23855001 chr3R_23855001 RAL-142 2096 chr3R 23888053 23888103 chr3R 23888174 23888224 5 121 0.5 2.5 1.5 2.0 171 chr3R 23888053 intron Pli - chr3R 23888138 intron Pli - chr3R 23888224 intron Pli - chr3R_5_23885001 chr3R_23885001 RAL-142 2097 chr3R 23944877 23944925 chr3R 23944997 23945017 21 112 5.0 6.0 5.5 3.2 140 chr3R 23944877 intron CG12268 - chr3R 23944947 intron CG12268 - chr3R 23945017 exon CG12268 - chr3R_21_23940001 chr3R_23940001 RAL-142 2098 chr3R 23949006 23949065 chr3R 23949118 23949177 17 111 7.0 5.5 6.2 2.4 171 chr3R 23949006 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949177 intergenic not near genes chr3R_17_23945001 chr3R_23945001 RAL-142 2099 chr3R 24002103 24002115 chr3R 24002218 24002229 5 113 13.0 5.5 9.2 0.5 126 chr3R 24002103 intron KrT95D - chr3R 24002166 intron KrT95D - chr3R 24002229 intron KrT95D - chr3R_5_24000001 chr3R_24000001 RAL-142 2100 chr3R 24002120 24002167 chr3R 24002215 24002282 18 109 2.0 4.5 3.2 4.3 162 chr3R 24002120 intron KrT95D - chr3R 24002201 intron KrT95D - chr3R 24002282 intron KrT95D - chr3R_18_24000001 chr3R_24000001 RAL-142 2101 chr3R 24011645 24011653 chr3R 24011753 24011754 6 113 8.5 5.0 6.8 0.8 109 chr3R 24011645 intron KrT95D - chr3R 24011700 intron KrT95D - chr3R 24011754 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-142 2102 chr3R 24011657 24011666 chr3R 24011752 24011767 7 108 4.0 5.0 4.5 1.3 110 chr3R 24011657 intron KrT95D - chr3R 24011712 intron KrT95D - chr3R 24011767 intron KrT95D - chr3R_7_24010001 chr3R_24010001 RAL-142 2103 chr3R 24021595 24021650 chr3R 24021720 24021774 11 124 5.0 3.5 4.2 2.1 179 chr3R 24021595 intron KrT95D - chr3R 24021684 intron KrT95D - chr3R 24021774 intron KrT95D - chr3R_11_24020001 chr3R_24020001 RAL-142 2104 chr3R 24072056 24072106 chr3R 24072528 24072558 jockey 18 458 15.5 8.5 12.0 1.4 502 chr3R 24072056 intron 4EHP - chr3R 24072307 intron 4EHP - chr3R 24072558 intron 4EHP - chr3R_18_24070001 chr3R_24070001 RAL-142 2105 chr3R 24076890 24076946 chr3R 24078392 24078447 hobo 5 1493 4.0 6.0 5.0 0.8 1557 chr3R 24076890 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078447 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-142 2106 chr3R 24199722 24199769 chr3R 24199830 24199864 14 104 3.0 9.0 6.0 2.0 142 chr3R 24199722 intron twin - chr3R 24199793 intron twin - chr3R 24199864 intron twin - chr3R_14_24195001 chr3R_24195001 RAL-142 2107 chr3R 24207205 24207239 chr3R 24212300 24212346 flea 10 5102 6.0 8.5 7.2 1.2 5141 chr3R 24207205 intron twin - chr3R 24209776 intron twin - chr3R 24212346 intron twin - chr3R_10_24205001 chr3R_24205001 RAL-142 2108 chr3R 24431574 24431625 chr3R 24431681 24431739 13 106 5.5 0.0 2.8 3.4 165 chr3R 24431574 intron nAChRalpha1 - chr3R 24431656 intron nAChRalpha1 - chr3R 24431739 intron nAChRalpha1 - chr3R_13_24430001 chr3R_24430001 RAL-142 2109 chr3R 24493026 24493078 chr3R 24493147 24493189 12 111 6.0 4.5 5.2 1.9 163 chr3R 24493026 intergenic not near genes chr3R 24493108 intergenic not near genes chr3R 24493189 intergenic not near genes chr3R_12_24490001 chr3R_24490001 RAL-142 2110 chr3R 24493250 24493294 chr3R 24493513 24493528 BS 6 256 5.0 3.5 4.2 1.2 278 chr3R 24493250 intergenic not near genes chr3R 24493389 intergenic not near genes chr3R 24493528 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-142 2111 chr3R 24527769 24527834 chr3R 24527895 24527960 19 124 6.5 3.0 4.8 3.3 191 chr3R 24527769 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527960 intergenic CG6607 +,CG13618 + chr3R_19_24525001 chr3R_24525001 RAL-142 2112 chr3R 24594653 24594664 chr3R 24594918 24594939 pogo 4 268 4.0 5.5 4.8 0.7 286 chr3R 24594653 intron mld + chr3R 24594796 intron mld + chr3R 24594939 intron mld + chr3R_4_24590001 chr3R_24590001 RAL-142 2113 chr3R 24730069 24730095 chr3R 24732471 24732474 Doc 9 2396 11.0 3.0 7.0 1.1 2405 chr3R 24730069 intron tok + chr3R 24731272 intron tok + chr3R 24732474 intron tok + chr3R_9_24730001 chr3R_24730001 RAL-142 2114 chr3R 24787513 24787559 chr3R 24787624 24787670 11 110 3.0 1.0 2.0 3.7 157 chr3R 24787513 intergenic CG5805 - chr3R 24787592 intergenic CG5805 -,Ets96B + chr3R 24787670 intergenic CG5805 -,Ets96B + chr3R_11_24785001 chr3R_24785001 RAL-142 2115 chr3R 24845986 24846009 chr3R 24846104 24846129 5 115 3.5 2.0 2.8 1.3 143 chr3R 24845986 intron Esp + chr3R 24846058 intron Esp + chr3R 24846129 intron Esp + chr3R_5_24845001 chr3R_24845001 RAL-142 2116 chr3R 24927104 24927117 chr3R 24931930 24931943 Doc 4 4826 14.0 6.5 10.2 0.4 4839 chr3R 24927104 intergenic Trf4-2 + chr3R 24929524 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-142 2117 chr3R 24927118 24927150 chr3R 24931920 24931970 Doc 15 4810 6.5 6.0 6.2 2.1 4852 chr3R 24927118 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931970 intergenic CG11771 + chr3R_15_24925001 chr3R_24925001 RAL-142 2118 chr3R 24973934 24973956 chr3R 24974045 24974061 4 110 5.5 9.5 7.5 0.5 127 chr3R 24973934 intergenic not near genes chr3R 24973998 intergenic not near genes chr3R 24974061 intergenic not near genes chr3R_4_24970001 chr3R_24970001 RAL-142 2119 chr3R 24973957 24973983 chr3R 24974033 24974052 13 92 2.5 7.0 4.8 2.2 95 chr3R 24973957 intergenic not near genes chr3R 24974004 intergenic not near genes chr3R 24974052 intergenic not near genes chr3R_13_24970001 chr3R_24970001 RAL-142 2120 chr3R 25126018 25126049 chr3R 25126646 25126678 5 628 31.0 17.0 24.0 0.2 660 chr3R 25126018 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126348 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126678 3` UTR,exon CG42503 -,Mocs2 - chr3R_5_25125001 chr3R_25125001 RAL-142 2121 chr3R 25209581 25209615 chr3R 25209681 25209732 7 105 0.0 4.5 2.2 2.2 151 chr3R 25209581 intron CG13654 + chr3R 25209656 intron CG13654 + chr3R 25209732 intron CG13654 + chr3R_7_25205001 chr3R_25205001 RAL-142 2122 chr3R 25291530 25291562 chr3R 25293763 25293784 5 2226 46.5 35.5 41.0 0.1 2254 chr3R 25291530 exon CG31098 - chr3R 25292657 exon CG31098 - chr3R 25293784 exon CG31102 - chr3R_5_25290001 chr3R_25290001 RAL-142 2123 chr3R 25360548 25360565 chr3R 25360755 25360787 4 221 2.0 1.5 1.8 1.4 239 chr3R 25360548 intron Fur1 - chr3R 25360668 intron Fur1 - chr3R 25360787 intron Fur1 - chr3R_4_25360001 chr3R_25360001 RAL-142 2124 chr3R 25436455 25436521 chr3R 25436584 25436628 20 112 4.5 2.5 3.5 4.4 173 chr3R 25436455 intron Fur1 - chr3R 25436542 intron Fur1 - chr3R 25436628 intron Fur1 - chr3R_20_25435001 chr3R_25435001 RAL-142 2125 chr3R 25549900 25549935 chr3R 25550008 25550058 9 112 5.0 7.0 6.0 1.3 158 chr3R 25549900 intron msi + chr3R 25549979 intron msi + chr3R 25550058 intron msi + chr3R_9_25545001 chr3R_25545001 RAL-142 2126 chr3R 25549940 25549945 chr3R 25550003 25550033 5 93 4.0 6.0 5.0 0.8 93 chr3R 25549940 intron msi + chr3R 25549986 intron msi + chr3R 25550033 intron msi + chr3R_5_25545001 chr3R_25545001 RAL-142 2127 chr3R 25591384 25591432 chr3R 25591486 25591525 5 107 2.5 0.0 1.2 2.3 141 chr3R 25591384 intron msi + chr3R 25591454 intron msi + chr3R 25591525 intron,3` UTR msi +,ymp - chr3R_5_25590001 chr3R_25590001 RAL-142 2128 chr3R 25671209 25671273 chr3R 25671341 25671407 9 131 2.0 2.0 2.0 3.0 198 chr3R 25671209 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671407 intron Lgr3 + chr3R_9_25670001 chr3R_25670001 RAL-142 2129 chr3R 25801257 25801291 chr3R 25802249 25802309 6 1006 1.0 3.0 2.0 2.0 1052 chr3R 25801257 intergenic not near genes chr3R 25801783 intergenic not near genes chr3R 25802309 intergenic not near genes chr3R_6_25800001 chr3R_25800001 RAL-142 2130 chr3R 25832692 25832716 chr3R 25841879 25841933 roo 6 9201 3.0 6.5 4.8 1.0 9241 chr3R 25832692 exon alpha4GT2 + chr3R 25837312 intron alpha4GT2 + chr3R 25841933 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-142 2131 chr3R 25843634 25843667 chr3R 25843799 25843816 7 160 1.0 7.5 4.2 1.3 182 chr3R 25843634 intergenic CR45653 + chr3R 25843725 intergenic CR45653 + chr3R 25843816 intergenic CR45653 + chr3R_7_25840001 chr3R_25840001 RAL-142 2132 chr3R 25927471 25927514 chr3R 25927588 25927629 7 116 4.0 0.5 2.2 2.2 158 chr3R 25927471 intron CCAP-R - chr3R 25927550 intron CCAP-R - chr3R 25927629 intron CCAP-R - chr3R_7_25925001 chr3R_25925001 RAL-142 2133 chr3R 26041160 26041182 chr3R 26041298 26041320 9 138 5.5 2.5 4.0 1.8 160 chr3R 26041160 intergenic E(spl)m8-HLH + chr3R 26041240 intergenic E(spl)m8-HLH +,gro + chr3R 26041320 intergenic E(spl)m8-HLH +,gro + chr3R_9_26040001 chr3R_26040001 RAL-142 2134 chr3R 26108814 26108854 chr3R 26117407 26117411 Tirant 5 8578 2.5 0.5 1.5 2.0 8597 chr3R 26108814 5` UTR CG31324 + chr3R 26113112 intron CG31324 + chr3R 26117411 intron CG31324 + chr3R_5_26110001 chr3R_26110001 RAL-142 2135 chr3R 26122426 26122479 chr3R 26122537 26122585 8 94 5.0 0.5 2.8 2.1 159 chr3R 26122426 intron CG31324 + chr3R 26122506 intron CG31324 + chr3R 26122585 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-142 2136 chr3R 26126515 26126570 chr3R 26126636 26126691 20 116 4.0 6.0 5.0 3.3 176 chr3R 26126515 intron CG31324 + chr3R 26126603 intron CG31324 + chr3R 26126691 intron,5` UTR CG31324 +,CG14556 + chr3R_20_26125001 chr3R_26125001 RAL-142 2137 chr3R 26138859 26138901 chr3R 26139436 26139459 5 569 1.0 3.0 2.0 1.7 600 chr3R 26138859 intergenic not near genes chr3R 26139159 intergenic not near genes chr3R 26139459 intergenic not near genes chr3R_5_26135001 chr3R_26135001 RAL-142 2138 chr3R 26239814 26239853 chr3R 26240160 26240199 13 344 3.5 7.0 5.2 2.1 385 chr3R 26239814 intron CR42745 + chr3R 26240006 intron CR42745 + chr3R 26240199 intron CR42745 + chr3R_13_26240001 chr3R_26240001 RAL-142 2139 chr3R 26263952 26263986 chr3R 26264072 26264106 7 114 8.0 4.0 6.0 1.0 154 chr3R 26263952 intron CG6154 + chr3R 26264029 intron CG6154 + chr3R 26264106 intron CG6154 + chr3R_7_26260001 chr3R_26260001 RAL-142 2140 chr3R 26264010 26264016 chr3R 26264067 26264080 13 89 2.5 3.5 3.0 3.2 70 chr3R 26264010 intron CG6154 + chr3R 26264045 intron CG6154 + chr3R 26264080 intron CG6154 + chr3R_13_26260001 chr3R_26260001 RAL-142 2141 chr3R 26292083 26292130 chr3R 26292198 26292245 10 113 6.5 4.5 5.5 1.5 162 chr3R 26292083 intergenic not near genes chr3R 26292164 intergenic not near genes chr3R 26292245 intergenic not near genes chr3R_10_26290001 chr3R_26290001 RAL-142 2142 chr3R 26339220 26339254 chr3R 26339324 26339384 8 123 2.0 1.5 1.8 2.9 164 chr3R 26339220 intron CG33970 + chr3R 26339302 intron CG33970 + chr3R 26339384 intron CG33970 + chr3R_8_26335001 chr3R_26335001 RAL-142 2143 chr3R 26349232 26349259 chr3R 26349363 26349373 7 127 4.5 0.0 2.2 2.2 141 chr3R 26349232 intron CG33970 + chr3R 26349302 intron CG33970 + chr3R 26349373 intron CG33970 + chr3R_7_26345001 chr3R_26345001 RAL-142 2144 chr3R 26370335 26370343 chr3R 26370442 26370446 5 114 0.0 5.0 2.5 1.4 111 chr3R 26370335 intergenic not near genes chr3R 26370390 intergenic not near genes chr3R 26370446 intergenic not near genes chr3R_5_26370001 chr3R_26370001 RAL-142 2145 chr3R 26374809 26374857 chr3R 26374946 26374984 6 133 2.5 5.0 3.8 1.2 175 chr3R 26374809 intergenic not near genes chr3R 26374896 intergenic not near genes chr3R 26374984 intergenic not near genes chr3R_6_26370001 chr3R_26370001 RAL-142 2146 chr3R 26376297 26376358 chr3R 26385492 26385522 roo 9 9183 5.0 4.5 4.8 1.6 9225 chr3R 26376297 intergenic not near genes chr3R 26380910 intergenic not near genes chr3R 26385522 intergenic not near genes chr3R_9_26380001 chr3R_26380001 RAL-142 2147 chr3R 26488932 26488970 chr3R 26489034 26489082 9 113 4.5 8.5 6.5 1.2 150 chr3R 26488932 intron plum - chr3R 26489007 intron plum - chr3R 26489082 intron plum - chr3R_9_26485001 chr3R_26485001 RAL-142 2148 chr3R 26510490 26510527 chr3R 26519580 26519617 roo 8 9088 4.0 4.0 4.0 1.6 9127 chr3R 26510490 intron plum - chr3R 26515054 intron plum - chr3R 26519617 intron,5` UTR plum -,CR45226 + chr3R_8_26515001 chr3R_26515001 RAL-142 2149 chr3R 26542063 26542076 chr3R 26542135 26542176 4 93 3.0 1.0 2.0 1.3 113 chr3R 26542063 intron scrib + chr3R 26542120 intron scrib + chr3R 26542176 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-142 2150 chr3R 26558306 26558360 chr3R 26565637 26565671 Stalker4 15 7321 3.5 5.5 4.5 2.7 7365 chr3R 26558306 intron scrib + chr3R 26561988 intron scrib + chr3R 26565671 intron scrib + chr3R_15_26560001 chr3R_26560001 RAL-142 2151 chr3R 26583230 26583271 chr3R 26583488 26583542 21 265 60.0 56.5 58.2 0.4 312 chr3R 26583230 intron scrib + chr3R 26583386 intron scrib + chr3R 26583542 intron scrib + chr3R_21_26580001 chr3R_26580001 RAL-142 2152 chr3R 26602951 26602979 chr3R 26603124 26603168 15 184 17.0 8.0 12.5 1.1 217 chr3R 26602951 3` UTR scrib + chr3R 26603060 3` UTR scrib + chr3R 26603168 3` UTR scrib + chr3R_15_26600001 chr3R_26600001 RAL-142 2153 chr3R 26641609 26641629 chr3R 26641731 26641736 4 116 12.5 7.5 10.0 0.4 127 chr3R 26641609 intergenic not near genes chr3R 26641672 intergenic not near genes chr3R 26641736 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-142 2154 chr3R 26641632 26641659 chr3R 26641723 26641766 12 102 7.5 6.5 7.0 1.5 134 chr3R 26641632 intergenic not near genes chr3R 26641699 intergenic not near genes chr3R 26641766 intergenic not near genes chr3R_12_26640001 chr3R_26640001 RAL-142 2155 chr3R 26642717 26642762 chr3R 26643123 26643177 jockey 18 422 6.5 5.5 6.0 2.6 460 chr3R 26642717 intergenic not near genes chr3R 26642947 intergenic not near genes chr3R 26643177 intergenic not near genes chr3R_18_26640001 chr3R_26640001 RAL-142 2156 chr3R 26698828 26698863 chr3R 26698916 26698977 15 104 3.5 6.0 4.8 2.6 149 chr3R 26698828 3` UTR amon - chr3R 26698902 3` UTR amon - chr3R 26698977 3` UTR amon - chr3R_15_26695001 chr3R_26695001 RAL-142 2157 chr3R 26703233 26703301 chr3R 26703364 26703428 14 122 6.0 0.0 3.0 3.5 195 chr3R 26703233 intron amon - chr3R 26703330 intron amon - chr3R 26703428 intron amon - chr3R_14_26700001 chr3R_26700001 RAL-142 2158 chr3R 26757555 26757560 chr3R 26757670 26757687 4 120 10.5 5.5 8.0 0.4 132 chr3R 26757555 3` UTR CR45562 - chr3R 26757621 3` UTR CR45562 - chr3R 26757687 3` UTR CR45562 - chr3R_4_26755001 chr3R_26755001 RAL-142 2159 chr3R 26757561 26757606 chr3R 26757667 26757691 25 112 3.5 5.0 4.2 4.8 130 chr3R 26757561 3` UTR CR45562 - chr3R 26757626 3` UTR CR45562 - chr3R 26757691 3` UTR CR45562 - chr3R_25_26755001 chr3R_26755001 RAL-142 2160 chr3R 26770205 26770225 chr3R 26770317 26770337 8 110 7.5 2.5 5.0 1.3 132 chr3R 26770205 intergenic CR45563 + chr3R 26770271 intergenic CR45563 + chr3R 26770337 intergenic not near genes chr3R_8_26770001 chr3R_26770001 RAL-142 2161 chr3R 26810522 26810579 chr3R 26811042 26811099 roo 8 516 1.5 4.0 2.8 2.1 577 chr3R 26810522 intron Tl + chr3R 26810810 intron Tl + chr3R 26811099 intron Tl + chr3R_8_26810001 chr3R_26810001 RAL-142 2162 chr3R 26845562 26845595 chr3R 26845656 26845697 9 104 3.5 4.5 4.0 1.8 135 chr3R 26845562 intron Lerp - chr3R 26845630 intron Lerp - chr3R 26845697 intron Lerp - chr3R_9_26845001 chr3R_26845001 RAL-142 2163 chr3R 26885689 26885716 chr3R 26885788 26885825 7 110 3.5 3.5 3.5 1.6 136 chr3R 26885689 intron T48 + chr3R 26885757 intron T48 + chr3R 26885825 intron T48 + chr3R_7_26885001 chr3R_26885001 RAL-142 2164 chr3R 26901476 26901529 chr3R 26901596 26901637 6 112 7.0 0.0 3.5 1.3 161 chr3R 26901476 intron T48 + chr3R 26901556 intron T48 + chr3R 26901637 intron T48 + chr3R_6_26900001 chr3R_26900001 RAL-142 2165 chr3R 26917271 26917303 chr3R 26917384 26917399 4 108 3.5 3.0 3.2 1.0 128 chr3R 26917271 intron sda + chr3R 26917335 intron sda + chr3R 26917399 intron sda + chr3R_4_26915001 chr3R_26915001 RAL-142 2166 chr3R 26990863 26990892 chr3R 26990976 26990981 4 106 4.0 5.0 4.5 0.7 118 chr3R 26990863 intergenic not near genes chr3R 26990922 intergenic not near genes chr3R 26990981 intergenic not near genes chr3R_4_26990001 chr3R_26990001 RAL-142 2167 chr3R 27007385 27007436 chr3R 27016542 27016549 roo 13 9153 9.0 3.5 6.2 1.8 9164 chr3R 27007385 intron RYa-R + chr3R 27011967 intron RYa-R + chr3R 27016549 intron RYa-R + chr3R_13_27010001 chr3R_27010001 RAL-142 2168 chr3R 27019502 27019542 chr3R 27019605 27019628 12 110 3.5 4.5 4.0 2.4 126 chr3R 27019502 intron,exon RYa-R +,CG17191 - chr3R 27019565 intron,exon RYa-R +,CG17191 - chr3R 27019628 intron,exon RYa-R +,CG17191 - chr3R_12_27015001 chr3R_27015001 RAL-142 2169 chr3R 27027652 27027696 chr3R 27027765 27027780 5 105 3.5 2.0 2.8 1.3 128 chr3R 27027652 intron RYa-R + chr3R 27027716 intron RYa-R + chr3R 27027780 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-142 2170 chr3R 27028721 27028752 chr3R 27028801 27028866 5 106 4.5 2.5 3.5 1.1 145 chr3R 27028721 intron RYa-R + chr3R 27028794 intron RYa-R + chr3R 27028866 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-142 2171 chr3R 27051630 27051684 chr3R 27051752 27051808 11 124 6.0 0.0 3.0 2.8 178 chr3R 27051630 intron RYa-R + chr3R 27051719 intron RYa-R + chr3R 27051808 intron RYa-R + chr3R_11_27050001 chr3R_27050001 RAL-142 2172 chr3R 27140489 27140536 chr3R 27148134 27148141 412 12 7636 5.0 4.5 4.8 2.1 7652 chr3R 27140489 intron CG6051 - chr3R 27144315 intron CG6051 - chr3R 27148141 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-142 2173 chr3R 27200145 27200182 chr3R 27200246 27200275 13 102 6.5 6.0 6.2 1.8 130 chr3R 27200145 intergenic not near genes chr3R 27200210 intergenic not near genes chr3R 27200275 intergenic not near genes chr3R_13_27200001 chr3R_27200001 RAL-142 2174 chr3R 27218323 27218355 chr3R 27218419 27218471 12 101 7.0 3.5 5.2 1.9 148 chr3R 27218323 intergenic CR34006 - chr3R 27218397 intergenic CR34006 - chr3R 27218471 intergenic CR34006 - chr3R_12_27215001 chr3R_27215001 RAL-142 2175 chr3R 27218356 27218368 chr3R 27218415 27218453 6 99 5.5 4.0 4.8 1.0 97 chr3R 27218356 intergenic CR34006 - chr3R 27218404 intergenic CR34006 - chr3R 27218453 intergenic CR34006 - chr3R_6_27215001 chr3R_27215001 RAL-142 2176 chr3R 27218683 27218739 chr3R 27218798 27218860 8 110 1.0 2.0 1.5 3.2 177 chr3R 27218683 intergenic CR34006 - chr3R 27218772 intergenic not near genes chr3R 27218860 intergenic not near genes chr3R_8_27215001 chr3R_27215001 RAL-142 2177 chr3R 27292271 27292307 chr3R 27292391 27292423 12 122 2.5 3.5 3.0 3.0 152 chr3R 27292271 intergenic CG3348 - chr3R 27292347 intergenic CG3348 - chr3R 27292423 intergenic CG3348 - chr3R_12_27290001 chr3R_27290001 RAL-142 2178 chr3R 27329449 27329490 chr3R 27329553 27329567 19 106 9.0 4.0 6.5 2.5 118 chr3R 27329449 intergenic CG3330 - chr3R 27329508 intergenic CG3330 - chr3R 27329567 intergenic CG3330 - chr3R_19_27325001 chr3R_27325001 RAL-142 2179 chr3R 27342783 27342826 chr3R 27351376 27351412 Tirant 7 8603 4.0 6.5 5.2 1.1 8629 chr3R 27342783 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351412 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-142 2180 chr3R 27452561 27452607 chr3R 27452770 27452822 15 210 6.0 4.0 5.0 2.5 261 chr3R 27452561 intergenic not near genes chr3R 27452692 intergenic not near genes chr3R 27452822 intergenic not near genes chr3R_15_27450001 chr3R_27450001 RAL-142 2181 chr3R 27470018 27470035 chr3R 27470715 27470731 4 696 6.0 0.0 3.0 1.0 713 chr3R 27470018 intergenic not near genes chr3R 27470374 intergenic not near genes chr3R 27470731 intergenic not near genes chr3R_4_27470001 chr3R_27470001 RAL-142 2182 chr3R 27470046 27470072 chr3R 27470706 27470720 7 668 3.5 0.0 1.8 2.5 674 chr3R 27470046 intergenic not near genes chr3R 27470383 intergenic not near genes chr3R 27470720 intergenic not near genes chr3R_7_27470001 chr3R_27470001 RAL-142 2183 chr3R 27492357 27492404 chr3R 27492473 27492479 5 107 1.0 1.0 1.0 2.5 122 chr3R 27492357 intergenic not near genes chr3R 27492418 intergenic not near genes chr3R 27492479 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-142 2184 chr3R 27496574 27496603 chr3R 27496696 27496732 9 131 8.0 4.0 6.0 1.3 158 chr3R 27496574 intergenic not near genes chr3R 27496653 intergenic not near genes chr3R 27496732 intergenic not near genes chr3R_9_27495001 chr3R_27495001 RAL-142 2185 chr3R 27541920 27541957 chr3R 27542030 27542057 12 111 5.0 5.0 5.0 2.0 137 chr3R 27541920 intergenic not near genes chr3R 27541988 intergenic not near genes chr3R 27542057 intergenic Gr98b + chr3R_12_27540001 chr3R_27540001 RAL-142 2186 chr3R 27619693 27619725 chr3R 27619824 27619861 6 130 8.5 3.0 5.8 0.9 168 chr3R 27619693 intron Tusp + chr3R 27619777 intron Tusp + chr3R 27619861 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-142 2187 chr3R 27619726 27619729 chr3R 27619814 27619861 9 110 7.0 2.5 4.8 1.6 135 chr3R 27619726 intron Tusp + chr3R 27619794 intron Tusp + chr3R 27619861 intron Tusp + chr3R_9_27615001 chr3R_27615001 RAL-142 2188 chr3R 27644220 27644284 chr3R 27644347 27644411 22 121 1.5 4.0 2.8 5.8 191 chr3R 27644220 intron tau - chr3R 27644316 intron tau - chr3R 27644411 intron tau - chr3R_22_27640001 chr3R_27640001 RAL-142 2189 chr3R 27653531 27653592 chr3R 27653906 27653936 13 356 10.0 5.0 7.5 1.5 405 chr3R 27653531 intron tau - chr3R 27653734 intron tau - chr3R 27653936 intron tau - chr3R_13_27650001 chr3R_27650001 RAL-142 2190 chr3R 27679920 27679949 chr3R 27680062 27680069 7 137 11.0 6.5 8.8 0.7 149 chr3R 27679920 exon CG12883 + chr3R 27679994 3` UTR CG12883 + chr3R 27680069 3` UTR CG12883 + chr3R_7_27680001 chr3R_27680001 RAL-142 2191 chr3R 27679953 27679972 chr3R 27680059 27680096 6 120 6.5 6.0 6.2 0.8 143 chr3R 27679953 3` UTR CG12883 + chr3R 27680024 3` UTR CG12883 + chr3R 27680096 3` UTR CG12883 + chr3R_6_27680001 chr3R_27680001 RAL-142 2192 chr3R 27705334 27705387 chr3R 27705436 27705464 13 89 6.0 3.0 4.5 2.4 130 chr3R 27705334 exon CG12428 - chr3R 27705399 intron CG12428 - chr3R 27705464 exon CG12428 - chr3R_13_27705001 chr3R_27705001 RAL-142 2193 chr3R 27779253 27779285 chr3R 27779351 27779381 8 93 7.0 5.0 6.0 1.1 128 chr3R 27779253 exon CG34353 - chr3R 27779317 intron CG34353 - chr3R 27779381 intron CG34353 - chr3R_8_27775001 chr3R_27775001 RAL-142 2194 chr3R 27791633 27791647 chr3R 27794799 27794814 Rt1c 5 3171 6.0 11.0 8.5 0.5 3181 chr3R 27791633 intron CG34353 - chr3R 27793224 intron CG34353 - chr3R 27794814 intron CG34353 - chr3R_5_27790001 chr3R_27790001 RAL-142 2195 chr3R 27799896 27799959 chr3R 27800018 27800076 7 118 1.5 1.5 1.5 2.8 180 chr3R 27799896 intron CG34353 - chr3R 27799986 intron CG34353 - chr3R 27800076 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-142 2196 chr3R 27800676 27800713 chr3R 27800789 27800838 14 119 4.0 2.0 3.0 3.5 162 chr3R 27800676 intron CG34353 - chr3R 27800757 intron CG34353 - chr3R 27800838 intron CG34353 - chr3R_14_27800001 chr3R_27800001 RAL-142 2197 chr3R 27823668 27823692 chr3R 27823757 27823792 5 90 2.5 4.5 3.5 1.1 124 chr3R 27823668 intron CG34353 - chr3R 27823730 intron CG34353 - chr3R 27823792 intron CG34353 - chr3R_5_27820001 chr3R_27820001 RAL-142 2198 chr3R 27856738 27856786 chr3R 27858243 27858281 hopper2 5 1498 2.0 3.0 2.5 1.4 1543 chr3R 27856738 intron CG34353 - chr3R 27857510 intron CG34353 - chr3R 27858281 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-142 2199 chr3R 27862949 27862981 chr3R 27868263 27868263 Transpac 6 5311 2.5 3.0 2.8 1.6 5314 chr3R 27862949 intron CG34353 - chr3R 27865606 intron CG34353 - chr3R 27868263 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-142 2200 chr3R 27875683 27875715 chr3R 27882773 27882800 297 5 7085 1.5 4.0 2.8 1.3 7117 chr3R 27875683 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882800 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-142 2201 chr3R 27994441 27994491 chr3R 27994547 27994604 7 113 2.5 3.5 3.0 1.8 163 chr3R 27994441 intergenic not near genes chr3R 27994522 intergenic not near genes chr3R 27994604 intergenic not near genes chr3R_7_27990001 chr3R_27990001 RAL-142 2202 chr3R 28002876 28002928 chr3R 28002988 28003040 14 110 3.5 3.0 3.2 3.3 164 chr3R 28002876 intergenic not near genes chr3R 28002958 intergenic not near genes chr3R 28003040 intergenic not near genes chr3R_14_28000001 chr3R_28000001 RAL-142 2203 chr3R 28017930 28017975 chr3R 28018041 28018101 7 113 3.5 1.5 2.5 2.0 171 chr3R 28017930 intergenic not near genes chr3R 28018016 intergenic not near genes chr3R 28018101 intergenic not near genes chr3R_7_28015001 chr3R_28015001 RAL-142 2204 chr3R 28068479 28068522 chr3R 28073948 28073988 I-element 10 5461 0.0 5.0 2.5 2.9 5509 chr3R 28068479 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073988 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-142 2205 chr3R 28068525 28068526 chr3R 28073943 28073978 I-element 4 5447 0.0 3.5 1.8 1.4 5453 chr3R 28068525 intron CG34362 + chr3R 28071252 intron CG34362 + chr3R 28073978 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-142 2206 chr3R 28132479 28132511 chr3R 28132574 28132590 6 88 1.5 1.0 1.2 2.7 111 chr3R 28132479 intergenic not near genes chr3R 28132534 intergenic not near genes chr3R 28132590 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-142 2207 chr3R 28137665 28137717 chr3R 28137780 28137785 13 104 3.0 2.5 2.8 3.4 120 chr3R 28137665 intergenic not near genes chr3R 28137725 intergenic not near genes chr3R 28137785 intergenic not near genes chr3R_13_28135001 chr3R_28135001 RAL-142 2208 chr3R 28152342 28152353 chr3R 28152436 28152465 6 104 5.0 2.0 3.5 1.3 123 chr3R 28152342 intron CG34354 + chr3R 28152404 intron CG34354 + chr3R 28152465 intron CG34354 + chr3R_6_28150001 chr3R_28150001 RAL-142 2209 chr3R 28173660 28173702 chr3R 28181107 28181116 mdg1 10 7455 2.0 3.5 2.8 2.6 7456 chr3R 28173660 intron CG34354 + chr3R 28177388 intron CG34354 + chr3R 28181116 intron CG34354 + chr3R_10_28175001 chr3R_28175001 RAL-142 2210 chr3R 28253328 28253365 chr3R 28255851 28255910 jockey 18 2530 3.0 6.0 4.5 3.3 2582 chr3R 28253328 intergenic not near genes chr3R 28254619 intergenic not near genes chr3R 28255910 intergenic not near genes chr3R_18_28250001 chr3R_28250001 RAL-142 2211 chr3R 28302075 28302125 chr3R 28302539 28302596 jockey 16 469 7.5 7.0 7.2 2.0 521 chr3R 28302075 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302596 intergenic not near genes chr3R_16_28300001 chr3R_28300001 RAL-142 2212 chr3R 28308064 28308080 chr3R 28308150 28308191 5 101 13.0 5.0 9.0 0.5 127 chr3R 28308064 intergenic not near genes chr3R 28308128 intergenic not near genes chr3R 28308191 intergenic not near genes chr3R_5_28305001 chr3R_28305001 RAL-142 2213 chr3R 28331492 28331510 chr3R 28331606 28331624 8 113 5.5 7.0 6.2 1.1 132 chr3R 28331492 intron larp - chr3R 28331558 intron larp - chr3R 28331624 intron larp - chr3R_8_28330001 chr3R_28330001 RAL-142 2214 chr3R 28352492 28352543 chr3R 28352861 28352879 12 358 2.0 4.0 3.0 3.0 387 chr3R 28352492 exon Or98b + chr3R 28352686 exon Or98b + chr3R 28352879 exon Or98b + chr3R_12_28350001 chr3R_28350001 RAL-142 2215 chr3R 28390107 28390145 chr3R 28390195 28390246 7 85 0.5 4.0 2.2 2.2 139 chr3R 28390107 intergenic not near genes chr3R 28390176 intergenic not near genes chr3R 28390246 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-142 2216 chr3R 28393666 28393726 chr3R 28393801 28393845 6 132 4.5 4.5 4.5 1.1 179 chr3R 28393666 intergenic not near genes chr3R 28393756 intergenic not near genes chr3R 28393845 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-142 2217 chr3R 28465272 28465333 chr3R 28465416 28465456 18 144 4.0 5.5 4.8 3.1 184 chr3R 28465272 intron beat-VI + chr3R 28465364 intron beat-VI + chr3R 28465456 intron beat-VI + chr3R_18_28465001 chr3R_28465001 RAL-142 2218 chr3R 28479113 28479164 chr3R 28479230 28479264 16 112 1.5 5.5 3.5 3.6 151 chr3R 28479113 intergenic not near genes chr3R 28479188 intergenic not near genes chr3R 28479264 intergenic not near genes chr3R_16_28475001 chr3R_28475001 RAL-142 2219 chr3R 28480300 28480330 chr3R 28480407 28480436 9 112 4.0 8.5 6.2 1.2 136 chr3R 28480300 intergenic not near genes chr3R 28480368 intergenic not near genes chr3R 28480436 intergenic not near genes chr3R_9_28480001 chr3R_28480001 RAL-142 2220 chr3R 28484353 28484409 chr3R 28486235 28486291 27 1889 38.5 56.5 47.5 0.6 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_27_28485001 chr3R_28485001 RAL-142 2221 chr3R 28625464 28625506 chr3R 28625590 28625591 4 107 3.5 7.0 5.2 0.6 127 chr3R 28625464 intron CG10011 - chr3R 28625528 intron CG10011 - chr3R 28625591 intron CG10011 - chr3R_4_28625001 chr3R_28625001 RAL-142 2222 chr3R 28670605 28670645 chr3R 28670719 28670766 4 119 0.0 1.5 0.8 2.2 161 chr3R 28670605 intergenic CG9989 +,CG33346 + chr3R 28670686 intergenic CG9989 +,CG33346 + chr3R 28670766 exon CG9989 + chr3R_4_28670001 chr3R_28670001 RAL-142 2223 chr3R 28702899 28702964 chr3R 28703012 28703070 26 106 3.0 5.5 4.2 5.0 171 chr3R 28702899 intron htt + chr3R 28702984 intron htt + chr3R 28703070 intron htt + chr3R_26_28700001 chr3R_28700001 RAL-142 2224 chr3R 28753282 28753331 chr3R 28755105 28755169 9 1831 3.5 4.5 4.0 1.8 1887 chr3R 28753282 intergenic not near genes chr3R 28754226 intergenic not near genes chr3R 28755169 intergenic CG9997 - chr3R_9_28750001 chr3R_28750001 RAL-142 2225 chr3R 28758255 28758260 chr3R 28763906 28763912 roo 4 5651 10.0 0.0 5.0 0.7 5657 chr3R 28758255 intergenic aqrs - chr3R 28761084 intergenic not near genes chr3R 28763912 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-142 2226 chr3R 28785353 28785388 chr3R 28785473 28785507 11 114 12.5 10.0 11.2 0.9 154 chr3R 28785353 intergenic not near genes chr3R 28785430 intergenic not near genes chr3R 28785507 intergenic not near genes chr3R_11_28785001 chr3R_28785001 RAL-142 2227 chr3R 28785391 28785408 chr3R 28785471 28785518 10 104 9.0 9.0 9.0 1.0 127 chr3R 28785391 intergenic not near genes chr3R 28785454 intergenic not near genes chr3R 28785518 intergenic not near genes chr3R_10_28785001 chr3R_28785001 RAL-142 2228 chr3R 28792889 28792898 chr3R 28797968 28797990 jockey 5 5102 2.5 3.0 2.8 1.3 5101 chr3R 28792889 intergenic not near genes chr3R 28795440 intergenic not near genes chr3R 28797990 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-142 2229 chr3R 28811544 28811600 chr3R 28811719 28811781 21 177 4.5 7.0 5.8 3.1 237 chr3R 28811544 intergenic wdn - chr3R 28811662 intergenic wdn -,CG1646 + chr3R 28811781 intergenic CG1646 +,wdn - chr3R_21_28810001 chr3R_28810001 RAL-142 2230 chr3R 28830871 28830895 chr3R 28830971 28831008 10 104 8.0 3.0 5.5 1.5 137 chr3R 28830871 intron WASp - chr3R 28830940 intron WASp - chr3R 28831008 intron WASp - chr3R_10_28830001 chr3R_28830001 RAL-142 2231 chr3R 28830902 28830922 chr3R 28830969 28831020 10 101 7.0 3.5 5.2 1.6 118 chr3R 28830902 intron WASp - chr3R 28830961 intron WASp - chr3R 28831020 intron WASp - chr3R_10_28830001 chr3R_28830001 RAL-142 2232 chr3R 21907534 21907536 chr3R 28831799 28831802 100 6924266 13.0 20.5 16.8 5.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_100_25365001 chr3R_25365001 RAL-142 2233 chr3R 28862112 28862153 chr3R 28862224 28862265 11 103 12.5 2.5 7.5 1.3 153 chr3R 28862112 intron spg + chr3R 28862188 intron spg + chr3R 28862265 intron spg + chr3R_11_28860001 chr3R_28860001 RAL-142 2234 chr3R 28938477 28938514 chr3R 28938612 28938624 5 121 7.0 0.5 3.8 1.0 147 chr3R 28938477 intron CG14521 - chr3R 28938550 intron CG14521 - chr3R 28938624 intron CG14521 - chr3R_5_28935001 chr3R_28935001 RAL-142 2235 chr3R 28947957 28947999 chr3R 28948081 28948135 17 144 4.5 6.0 5.2 2.7 178 chr3R 28947957 intron CG14521 - chr3R 28948046 intron CG14521 - chr3R 28948135 intron CG14521 - chr3R_17_28945001 chr3R_28945001 RAL-142 2236 chr3R 28968381 28968443 chr3R 28968493 28968555 22 108 6.0 4.0 5.0 3.7 174 chr3R 28968381 intron CG14521 - chr3R 28968468 intron CG14521 - chr3R 28968555 intron CG14521 - chr3R_22_28965001 chr3R_28965001 RAL-142 2237 chr3R 21907534 21907535 chr3R 29013340 29013340 5 7105805 12.5 12.0 12.2 0.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-142 2238 chr3R 29054166 29054176 chr3R 29054279 29054289 4 112 2.0 7.5 4.8 0.7 123 chr3R 29054166 intergenic CG11843 +,CG11842 + chr3R 29054228 intergenic CG11843 +,CG11842 + chr3R 29054289 intergenic CG11843 +,CG11842 + chr3R_4_29050001 chr3R_29050001 RAL-142 2239 chr3R 29070020 29070073 chr3R 29070136 29070189 5 116 2.0 3.5 2.8 1.3 169 chr3R 29070020 intron CG11873 + chr3R 29070104 intron CG11873 + chr3R 29070189 intron CG11873 + chr3R_5_29070001 chr3R_29070001 RAL-142 2240 chr3R 29237235 29237531 chr3R 29239276 29239458 8 2026 18.5 5.0 11.8 0.6 2223 chr3R 29237235 exon CG11951 - chr3R 29238346 intron CG11951 - chr3R 29239458 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-142 2241 chr3R 29239240 29239248 chr3R 29245527 29245559 6 6297 6.0 24.5 15.2 0.4 6319 chr3R 29239240 exon CG31427 - chr3R 29242400 exon CG31445 - chr3R 29245559 exon SP1029 - chr3R_6_29240001 chr3R_29240001 RAL-142 2242 chr3R 29256259 29256299 chr3R 29256346 29256360 18 94 3.0 6.5 4.8 3.1 101 chr3R 29256259 intergenic CG45544 +,stg - chr3R 29256310 intergenic CG45544 + chr3R 29256360 intergenic CG45544 + chr3R_18_29255001 chr3R_29255001 RAL-142 2243 chr3R 29265712 29265727 chr3R 29265815 29265866 12 123 4.5 4.5 4.5 2.2 154 chr3R 29265712 intergenic not near genes chr3R 29265789 intergenic not near genes chr3R 29265866 intergenic not near genes chr3R_12_29265001 chr3R_29265001 RAL-142 2244 chr3R 29332247 29332294 chr3R 29332359 29332406 16 112 4.0 2.0 3.0 4.0 159 chr3R 29332247 intergenic not near genes chr3R 29332326 intergenic not near genes chr3R 29332406 intergenic not near genes chr3R_16_29330001 chr3R_29330001 RAL-142 2245 chr3R 29402955 29403004 chr3R 29403083 29403134 7 129 3.0 3.0 3.0 1.8 179 chr3R 29402955 intron Ptp99A + chr3R 29403044 intron Ptp99A + chr3R 29403134 intron Ptp99A + chr3R_7_29400001 chr3R_29400001 RAL-142 2246 chr3R 29406585 29406595 chr3R 29407906 29407908 jockey 4 1318 27.0 8.0 17.5 0.2 1323 chr3R 29406585 intron Ptp99A + chr3R 29407246 intron Ptp99A + chr3R 29407908 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-142 2247 chr3R 29406598 29406607 chr3R 29407905 29407913 jockey 5 1311 25.0 7.5 16.2 0.3 1315 chr3R 29406598 intron Ptp99A + chr3R 29407256 intron Ptp99A + chr3R 29407913 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-142 2248 chr3R 29406611 29406651 chr3R 29407900 29407901 jockey 13 1293 6.5 6.0 6.2 1.8 1290 chr3R 29406611 intron Ptp99A + chr3R 29407256 intron Ptp99A + chr3R 29407901 intron Ptp99A + chr3R_13_29405001 chr3R_29405001 RAL-142 2249 chr3R 29474403 29474459 chr3R 29474525 29474581 12 116 3.5 4.0 3.8 2.5 178 chr3R 29474403 intron Ptp99A + chr3R 29474492 intron Ptp99A + chr3R 29474581 intron Ptp99A + chr3R_12_29470001 chr3R_29470001 RAL-142 2250 chr3R 29505857 29505922 chr3R 29505969 29506034 12 102 6.5 0.0 3.2 2.9 177 chr3R 29505857 intergenic not near genes chr3R 29505946 intergenic not near genes chr3R 29506034 intergenic not near genes chr3R_12_29505001 chr3R_29505001 RAL-142 2251 chr3R 29581518 29581552 chr3R 29581632 29581668 8 115 6.0 5.5 5.8 1.2 150 chr3R 29581518 intergenic not near genes chr3R 29581593 intergenic not near genes chr3R 29581668 intergenic not near genes chr3R_8_29580001 chr3R_29580001 RAL-142 2252 chr3R 29627022 29627030 chr3R 29627144 29627152 5 122 0.0 3.5 1.8 1.8 130 chr3R 29627022 intergenic not near genes chr3R 29627087 intergenic not near genes chr3R 29627152 intergenic not near genes chr3R_5_29625001 chr3R_29625001 RAL-142 2253 chr3R 29738269 29738293 chr3R 29739767 29739791 hobo 6 1501 6.5 8.5 7.5 0.7 1522 chr3R 29738269 intergenic CG1969 +,CG7598 + chr3R 29739030 intron CG1969 + chr3R 29739791 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-142 2254 chr3R 29760338 29760383 chr3R 29761574 29761619 pogo 9 1232 5.0 0.5 2.8 2.4 1281 chr3R 29760338 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761619 intergenic not near genes chr3R_9_29760001 chr3R_29760001 RAL-142 2255 chr3R 29782973 29783011 chr3R 29783068 29783120 5 102 1.5 0.0 0.8 2.8 147 chr3R 29782973 intron kay + chr3R 29783046 intron kay + chr3R 29783120 intron kay + chr3R_5_29780001 chr3R_29780001 RAL-142 2256 chr3R 29816759 29816767 chr3R 29816872 29816874 6 116 13.5 2.5 8.0 0.7 115 chr3R 29816759 3` UTR CG7829 - chr3R 29816816 3` UTR CG7829 - chr3R 29816874 3` UTR CG7829 - chr3R_6_29815001 chr3R_29815001 RAL-142 2257 chr3R 29816769 29816817 chr3R 29816871 29816936 23 111 6.5 2.5 4.5 4.2 167 chr3R 29816769 3` UTR CG7829 - chr3R 29816852 3` UTR CG7829 - chr3R 29816936 exon CG7829 - chr3R_23_29815001 chr3R_29815001 RAL-142 2258 chr3R 29881993 29881999 chr3R 29891184 29891191 roo 4 9192 12.5 1.0 6.8 0.5 9198 chr3R 29881993 intron CG31038 + chr3R 29886592 intron CG31038 + chr3R 29891191 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-142 2259 chr3R 29882004 29882041 chr3R 29891176 29891222 roo 12 9182 6.5 1.0 3.8 2.5 9218 chr3R 29882004 intron CG31038 + chr3R 29886613 intron CG31038 + chr3R 29891222 intron CG31038 + chr3R_12_29885001 chr3R_29885001 RAL-142 2260 chr3R 29950561 29950593 chr3R 29950657 29950689 8 88 9.0 5.0 7.0 1.0 128 chr3R 29950561 intergenic TkR99D - chr3R 29950625 intergenic TkR99D - chr3R 29950689 intergenic TkR99D - chr3R_8_29950001 chr3R_29950001 RAL-142 2261 chr3R 29963463 29963509 chr3R 29963598 29963637 11 124 7.5 1.5 4.5 2.0 174 chr3R 29963463 intron TkR99D - chr3R 29963550 intron TkR99D - chr3R 29963637 intron TkR99D - chr3R_11_29960001 chr3R_29960001 RAL-142 2262 chr3R 29966057 29966073 chr3R 29966139 29966151 6 86 5.0 6.0 5.5 0.9 94 chr3R 29966057 intron TkR99D - chr3R 29966104 intron TkR99D - chr3R 29966151 intron TkR99D - chr3R_6_29965001 chr3R_29965001 RAL-142 2263 chr3R 30026937 30026981 chr3R 30027041 30027094 12 107 0.5 10.0 5.2 1.9 157 chr3R 30026937 intron Axn + chr3R 30027016 intron Axn + chr3R 30027094 intron Axn + chr3R_12_30025001 chr3R_30025001 RAL-142 2264 chr3R 30238733 30238786 chr3R 30239932 30239986 1360 15 1195 5.0 5.0 5.0 2.5 1253 chr3R 30238733 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239986 intergenic not near genes chr3R_15_30235001 chr3R_30235001 RAL-142 2265 chr3R 30252316 30252547 chr3R 30252477 30252701 4 266 20.5 19.5 20.0 0.2 385 chr3R 30252316 exon CG9682 + chr3R 30252508 exon CG9682 + chr3R 30252701 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-142 2266 chr3R 30260335 30260387 chr3R 30260443 30260498 17 103 7.0 3.5 5.2 2.7 163 chr3R 30260335 intergenic not near genes chr3R 30260416 intergenic not near genes chr3R 30260498 intergenic not near genes chr3R_17_30260001 chr3R_30260001 RAL-142 2267 chr3R 30268250 30268442 chr3R 30268333 30268512 8 88 3.0 5.0 4.0 1.6 262 chr3R 30268250 intergenic not near genes chr3R 30268381 intergenic not near genes chr3R 30268512 intergenic not near genes chr3R_8_30265001 chr3R_30265001 RAL-142 2268 chr3R 30317308 30317356 chr3R 30324916 30324983 roo 8 7616 2.5 1.5 2.0 2.7 7675 chr3R 30317308 intron hdc + chr3R 30321146 intron hdc + chr3R 30324983 intron hdc + chr3R_8_30320001 chr3R_30320001 RAL-142 2269 chr3R 30338373 30338392 chr3R 30338490 30338493 7 113 4.0 5.5 4.8 1.2 120 chr3R 30338373 intron hdc + chr3R 30338433 intron hdc + chr3R 30338493 intron hdc + chr3R_7_30335001 chr3R_30335001 RAL-142 2270 chr3R 30375517 30375559 chr3R 30383175 30383205 412 7 7653 2.0 2.5 2.2 2.2 7688 chr3R 30375517 intergenic not near genes chr3R 30379361 intergenic not near genes chr3R 30383205 intergenic not near genes chr3R_7_30375001 chr3R_30375001 RAL-142 2271 chr3R 30396185 30396222 chr3R 30404486 30404523 roo 7 8296 6.0 3.0 4.5 1.3 8338 chr3R 30396185 intergenic not near genes chr3R 30400354 intergenic not near genes chr3R 30404523 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-142 2272 chr3R 30405252 30405274 chr3R 30405363 30405385 10 108 24.5 9.5 17.0 0.6 133 chr3R 30405252 intergenic CR45570 + chr3R 30405318 intergenic CR45570 + chr3R 30405385 intergenic CR45570 + chr3R_10_30405001 chr3R_30405001 RAL-142 2273 chr3R 30565416 30565465 chr3R 30565565 30565592 6 146 0.5 1.5 1.0 3.0 176 chr3R 30565416 intron tmod + chr3R 30565504 intron tmod + chr3R 30565592 intron tmod + chr3R_6_30565001 chr3R_30565001 RAL-142 2274 chr3R 30571664 30571716 chr3R 30571779 30571814 9 108 0.5 2.5 1.5 3.6 150 chr3R 30571664 intron tmod + chr3R 30571739 intron tmod + chr3R 30571814 exon tmod + chr3R_9_30570001 chr3R_30570001 RAL-142 2275 chr3R 30577571 30577606 chr3R 30577848 30577883 8 277 8.0 3.0 5.5 1.2 312 chr3R 30577571 intron tmod + chr3R 30577727 intron tmod + chr3R 30577883 intron tmod + chr3R_8_30575001 chr3R_30575001 RAL-142 2276 chr3R 30627612 30627625 chr3R 30627695 30627736 4 92 4.5 8.0 6.2 0.6 124 chr3R 30627612 exon CG2267 - chr3R 30627674 exon CG2267 - chr3R 30627736 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-142 2277 chr3R 30679488 30679551 chr3R 30686992 30687019 blood 14 7497 1.5 2.0 1.8 5.0 7531 chr3R 30679488 intergenic not near genes chr3R 30683254 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_14_30680001 chr3R_30680001 RAL-142 2278 chr3R 30737914 30737969 chr3R 30738042 30738052 10 112 4.5 3.5 4.0 2.0 138 chr3R 30737914 intergenic not near genes chr3R 30737983 intergenic not near genes chr3R 30738052 intergenic not near genes chr3R_10_30735001 chr3R_30735001 RAL-142 2279 chr3R 30818778 30818842 chr3R 30820378 30820425 1360 17 1596 6.0 6.5 6.2 2.4 1647 chr3R 30818778 intron cindr + chr3R 30819602 intron cindr + chr3R 30820425 intron cindr + chr3R_17_30815001 chr3R_30815001 RAL-142 2280 chr3R 30823378 30823416 chr3R 30823509 30823531 6 123 5.0 2.0 3.5 1.3 153 chr3R 30823378 intron cindr + chr3R 30823454 intron cindr + chr3R 30823531 intron cindr + chr3R_6_30820001 chr3R_30820001 RAL-142 2281 chr3R 30850219 30850270 chr3R 30850336 30850397 14 125 4.0 3.5 3.8 2.9 178 chr3R 30850219 intergenic not near genes chr3R 30850308 intergenic not near genes chr3R 30850397 intergenic not near genes chr3R_14_30850001 chr3R_30850001 RAL-142 2282 chr3R 30900498 30900554 chr3R 30900613 30900669 22 105 6.0 7.0 6.5 2.9 171 chr3R 30900498 exon Cyp4c3 + chr3R 30900584 3` UTR Cyp4c3 + chr3R 30900669 3` UTR Cyp4c3 + chr3R_22_30900001 chr3R_30900001 RAL-142 2283 chr3R 31029667 31029717 chr3R 31029780 31029834 6 116 2.5 5.0 3.8 1.2 167 chr3R 31029667 intergenic not near genes chr3R 31029750 intergenic not near genes chr3R 31029834 intergenic not near genes chr3R_6_31025001 chr3R_31025001 RAL-142 2284 chr3R 31069634 31069673 chr3R 31069747 31069795 13 112 4.0 4.0 4.0 2.6 161 chr3R 31069634 intron Sox100B + chr3R 31069714 intron Sox100B + chr3R 31069795 intron Sox100B + chr3R_13_31065001 chr3R_31065001 RAL-142 2285 chr3R 31074217 31074250 chr3R 31081835 31081852 springer 11 7621 8.5 4.5 6.5 1.5 7635 chr3R 31074217 intron Sox100B + chr3R 31078034 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_11_31075001 chr3R_31075001 RAL-142 2286 chr3R 31087115 31087130 chr3R 31087612 31087641 7 518 1.0 2.0 1.5 2.8 526 chr3R 31087115 intergenic not near genes chr3R 31087378 intergenic not near genes chr3R 31087641 intergenic not near genes chr3R_7_31085001 chr3R_31085001 RAL-142 2287 chr3R 31137142 31137167 chr3R 31137257 31137282 5 115 2.5 1.5 2.0 1.7 140 chr3R 31137142 intron Gycbeta100B + chr3R 31137212 intron Gycbeta100B + chr3R 31137282 intron Gycbeta100B + chr3R_5_31135001 chr3R_31135001 RAL-142 2288 chr3R 31163425 31163439 chr3R 31163523 31163540 7 103 4.5 4.0 4.2 1.3 115 chr3R 31163425 intron,intron Gycbeta100B +,stops - chr3R 31163482 intron,intron Gycbeta100B +,stops - chr3R 31163540 intron,exon Gycbeta100B +,stops - chr3R_7_31160001 chr3R_31160001 RAL-142 2289 chr3R 31222940 31222974 chr3R 31223059 31223067 8 113 7.5 4.5 6.0 1.1 127 chr3R 31222940 intron CG12054 + chr3R 31223004 intron CG12054 + chr3R 31223067 intron CG12054 + chr3R_8_31220001 chr3R_31220001 RAL-142 2290 chr3R 31260239 31260268 chr3R 31260324 31260380 5 104 5.0 4.5 4.8 0.9 141 chr3R 31260239 intergenic CG18672 +,CG3669 + chr3R 31260310 5` UTR CG18672 + chr3R 31260380 5` UTR CG18672 + chr3R_5_31260001 chr3R_31260001 RAL-142 2291 chr3R 31279362 31279407 chr3R 31285565 31285576 diver 11 6203 2.5 3.0 2.8 2.9 6214 chr3R 31279362 intergenic not near genes chr3R 31282469 intergenic not near genes chr3R 31285576 intergenic not near genes chr3R_11_31280001 chr3R_31280001 RAL-142 2292 chr3R 31413083 31413123 chr3R 31418297 31418311 copia 9 5211 3.0 0.5 1.8 3.2 5228 chr3R 31413083 intron Gprk2 + chr3R 31415697 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-142 2293 chr3R 31426874 31426901 chr3R 31426986 31427027 6 122 2.5 5.5 4.0 1.2 153 chr3R 31426874 intron Gprk2 + chr3R 31426950 intron Gprk2 + chr3R 31427027 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-142 2294 chr3R 31430691 31430744 chr3R 31430814 31430848 4 117 5.0 2.0 3.5 0.9 157 chr3R 31430691 intron Gprk2 + chr3R 31430770 intron Gprk2 + chr3R 31430848 intron Gprk2 + chr3R_4_31430001 chr3R_31430001 RAL-142 2295 chr3R 31435329 31435389 chr3R 31435516 31435576 31 181 5.5 10.5 8.0 3.4 247 chr3R 31435329 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435576 intron Gprk2 + chr3R_31_31435001 chr3R_31435001 RAL-142 2296 chr3R 31539332 31539355 chr3R 31539430 31539452 5 108 1.5 2.5 2.0 1.7 120 chr3R 31539332 intergenic not near genes chr3R 31539392 intergenic not near genes chr3R 31539452 intergenic not near genes chr3R_5_31535001 chr3R_31535001 RAL-142 2297 chr3R 31599774 31599807 chr3R 31599864 31599906 14 100 4.5 3.5 4.0 2.8 132 chr3R 31599774 intron CycG - chr3R 31599840 intron CycG - chr3R 31599906 intron CycG - chr3R_14_31595001 chr3R_31595001 RAL-142 2298 chr3R 31627016 31627056 chr3R 31627555 31627589 7 534 2.5 2.0 2.2 2.2 573 chr3R 31627016 intron kek6 + chr3R 31627302 intron kek6 + chr3R 31627589 intron kek6 + chr3R_7_31625001 chr3R_31625001 RAL-142 2299 chr3R 31691519 31691563 chr3R 31696297 31696337 Doc 13 4787 3.5 5.0 4.2 2.5 4818 chr3R 31691519 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696337 intergenic not near genes chr3R_13_31690001 chr3R_31690001 RAL-142 2300 chr3R 31774844 31774865 chr3R 31775023 31775025 6 174 9.5 9.0 9.2 0.6 181 chr3R 31774844 3` UTR sip3 + chr3R 31774934 3` UTR sip3 + chr3R 31775025 3` UTR sip3 + chr3R_6_31770001 chr3R_31770001 RAL-142 2301 chr3R 31774874 31774896 chr3R 31775021 31775064 11 171 5.5 8.5 7.0 1.4 190 chr3R 31774874 3` UTR sip3 + chr3R 31774969 3` UTR sip3 + chr3R 31775064 3` UTR,3` UTR sip3 +,CG2126 - chr3R_11_31770001 chr3R_31770001 RAL-142 2302 chr3R 31961343 31961367 chr3R 31961432 31961480 4 93 2.5 5.0 3.8 0.8 137 chr3R 31961343 intron heph - chr3R 31961412 intron heph - chr3R 31961480 intron heph - chr3R_4_31960001 chr3R_31960001 RAL-142 2303 chr3R 31962073 31962084 chr3R 31962397 31962425 5 333 3.0 1.5 2.2 1.6 352 chr3R 31962073 intron heph - chr3R 31962249 intron heph - chr3R 31962425 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-142 2304 chr3R 31975765 31975827 chr3R 31975885 31975933 6 108 2.0 0.0 1.0 3.0 168 chr3R 31975765 intron heph - chr3R 31975849 intron heph - chr3R 31975933 intron heph - chr3R_6_31975001 chr3R_31975001 RAL-142 2305 chr4 293836 293893 chr4 294116 294162 4 263 0.5 0.0 0.2 3.3 326 chr4 293836 intron Syt7 - chr4 293999 intron Syt7 - chr4 294162 intron Syt7 - chr4_4_290001 chr4_290001 RAL-142 2306 chr4 418216 418260 chr4 418345 418389 5 126 1.5 0.5 1.0 2.5 173 chr4 418216 intergenic not near genes chr4 418302 intergenic not near genes chr4 418389 intergenic not near genes chr4_5_415001 chr4_415001 RAL-142 2307 chr4 654345 654390 chr4 654456 654508 7 117 2.5 2.0 2.2 2.2 163 chr4 654345 intron gw - chr4 654426 intron gw - chr4 654508 exon gw - chr4_7_650001 chr4_650001 RAL-142 2308 chr4 671582 671617 chr4 680200 680230 Tirant 4 8616 0.5 1.0 0.8 2.2 8648 chr4 671582 intron CG11360 + chr4 675906 intron CG11360 + chr4 680230 intron CG11360 + chr4_4_675001 chr4_675001 RAL-142 2309 chr4 905554 905585 chr4 905649 905701 10 109 6.0 3.5 4.8 1.7 147 chr4 905554 5` UTR unc-13 - chr4 905628 5` UTR unc-13 - chr4 905701 5` UTR unc-13 - chr4_10_905001 chr4_905001 RAL-142 2310 chrX 447271 447305 chrX 447436 447451 5 172 1.5 2.5 2.0 1.7 180 chrX 447271 intron CG32816 - chrX 447361 intron CG32816 - chrX 447451 intron CG32816 - chrX_5_445001 chrX_445001 RAL-142 2311 chrX 450331 450392 chrX 450444 450505 17 112 2.5 4.5 3.5 3.8 174 chrX 450331 intron CG32816 - chrX 450418 intron CG32816 - chrX 450505 intron CG32816 - chrX_17_450001 chrX_450001 RAL-142 2312 chrX 547604 547663 chrX 547883 547926 5 269 1.5 0.0 0.8 2.8 322 chrX 547604 intron Appl + chrX 547765 intron Appl + chrX 547926 intron Appl + chrX_5_545001 chrX_545001 RAL-142 2313 chrX 551401 551442 chrX 558994 559013 412 4 7590 3.5 1.5 2.5 1.1 7612 chrX 551401 intron Appl + chrX 555207 intron Appl + chrX 559013 intron Appl + chrX_4_555001 chrX_555001 RAL-142 2314 chrX 667617 667674 chrX 667736 667793 9 113 3.0 1.0 2.0 3.0 176 chrX 667617 intergenic not near genes chrX 667705 intergenic not near genes chrX 667793 intergenic not near genes chrX_9_665001 chrX_665001 RAL-142 2315 chrX 680826 680839 chrX 680924 680942 5 105 10.0 3.0 6.5 0.7 116 chrX 680826 intergenic not near genes chrX 680884 intergenic not near genes chrX 680942 intergenic not near genes chrX_5_680001 chrX_680001 RAL-142 2316 chrX 718300 718340 chrX 718415 718454 6 111 2.5 3.5 3.0 1.5 154 chrX 718300 intron sdk + chrX 718377 intron sdk + chrX 718454 intron sdk + chrX_6_715001 chrX_715001 RAL-142 2317 chrX 757214 757242 chrX 757474 757517 5 280 4.0 8.5 6.2 0.7 303 chrX 757214 intron CG5254 + chrX 757366 intron CG5254 + chrX 757517 intron CG5254 + chrX_5_755001 chrX_755001 RAL-142 2318 chrX 802272 802318 chrX 802362 802408 12 86 6.5 6.5 6.5 1.6 136 chrX 802272 exon CG13359 - chrX 802340 exon CG13359 - chrX 802408 exon CG13359 - chrX_12_800001 chrX_800001 RAL-142 2319 chrX 812252 812300 chrX 817897 817926 297 15 5657 6.0 7.5 6.8 1.9 5674 chrX 812252 intron CG43867 - chrX 815089 intron CG43867 - chrX 817926 intron CG43867 - chrX_15_815001 chrX_815001 RAL-142 2320 chrX 827599 827625 chrX 835409 835452 roo 4 7822 4.5 3.0 3.8 0.8 7853 chrX 827599 intron CG43867 - chrX 831526 intron CG43867 - chrX 835452 intron CG43867 - chrX_4_830001 chrX_830001 RAL-142 2321 chrX 906674 906733 chrX 908495 908522 S-element 11 1812 4.0 6.0 5.0 1.8 1848 chrX 906674 intron CG43867 - chrX 907598 intron CG43867 - chrX 908522 intron CG43867 - chrX_11_905001 chrX_905001 RAL-142 2322 chrX 1032229 1032261 chrX 1043417 1043473 412 16 11190 34.0 51.5 42.8 0.4 11244 chrX 1032229 intron,intron su(w[a]) +,CG14630 + chrX 1037851 intron su(w[a]) + chrX 1043473 intron su(w[a]) + chrX_16_1035001 chrX_1035001 RAL-142 2323 chrX 1053117 1053120 chrX 16983076 16983077 8 15929958 6.5 5.5 6.0 1.1 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_8_9015001 chrX_9015001 RAL-142 2324 chrX 1063733 1063751 chrX 1072561 1072579 roo 8 8827 16.0 8.5 12.2 0.6 8846 chrX 1063733 intron CR44779 + chrX 1068156 intron CR44779 + chrX 1072579 intron CR44779 + chrX_8_1065001 chrX_1065001 RAL-142 2325 chrX 1256983 1257004 chrX 1257083 1257088 4 98 7.5 14.5 11.0 0.3 105 chrX 1256983 intron Atf3 - chrX 1257036 intron Atf3 - chrX 1257088 intron Atf3 - chrX_4_1255001 chrX_1255001 RAL-142 2326 chrX 1308087 1308139 chrX 1308200 1308258 14 112 4.5 0.5 2.5 4.0 171 chrX 1308087 intron DAAM - chrX 1308172 intron DAAM - chrX 1308258 intron DAAM - chrX_14_1305001 chrX_1305001 RAL-142 2327 chrX 1357774 1357806 chrX 1367954 1368008 Doc 12 10196 7.5 5.5 6.5 1.6 10234 chrX 1357774 intergenic png - chrX 1362891 intergenic not near genes chrX 1368008 intergenic not near genes chrX_12_1360001 chrX_1360001 RAL-142 2328 chrX 1494708 1494743 chrX 1494847 1494885 12 151 3.5 6.0 4.8 2.1 177 chrX 1494708 intron,intron inc +,Nmdar2 - chrX 1494796 intron,intron inc +,Nmdar2 - chrX 1494885 intron,intron inc +,Nmdar2 - chrX_12_1490001 chrX_1490001 RAL-142 2329 chrX 1518038 1518066 chrX 1523442 1523487 jockey 7 5429 2.5 3.0 2.8 1.8 5449 chrX 1518038 intergenic inc + chrX 1520762 intergenic not near genes chrX 1523487 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-142 2330 chrX 1930521 1930570 chrX 1938108 1938130 opus 15 7580 3.0 8.0 5.5 2.3 7609 chrX 1930521 intergenic CG11596 + chrX 1934326 intergenic not near genes chrX 1938130 3` UTR CG3857 - chrX_15_1930001 chrX_1930001 RAL-142 2331 chrX 1954881 1954918 chrX 1962825 1962856 Stalker2 4 7941 8.0 1.5 4.8 0.7 7975 chrX 1954881 intron Hr4 + chrX 1958868 intron Hr4 + chrX 1962856 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-142 2332 chrX 2009449 2009496 chrX 2009575 2009622 17 123 10.0 5.5 7.8 1.9 173 chrX 2009449 intergenic CG4406 - chrX 2009536 intergenic CG4406 -,CR45478 + chrX 2009622 intergenic CG4406 -,CR45478 + chrX_17_2005001 chrX_2005001 RAL-142 2333 chrX 2023093 2023095 chrX 2023896 2023917 4 817 43.0 22.5 32.8 0.1 824 chrX 2023093 3` UTR east + chrX 2023505 3` UTR east + chrX 2023917 3` UTR,3` UTR east +,Actn - chrX_4_2020001 chrX_2020001 RAL-142 2334 chrX 2023099 2023111 chrX 2023886 2023933 7 816 35.0 22.0 28.5 0.2 834 chrX 2023099 3` UTR east + chrX 2023516 3` UTR east + chrX 2023933 3` UTR,3` UTR east +,Actn - chrX_7_2020001 chrX_2020001 RAL-142 2335 chrX 2023925 2023980 chrX 2024081 2024128 16 147 19.5 30.0 24.8 0.6 203 chrX 2023925 3` UTR,3` UTR east +,Actn - chrX 2024026 3` UTR,3` UTR east +,Actn - chrX 2024128 3` UTR,3` UTR east +,Actn - chrX_16_2020001 chrX_2020001 RAL-142 2336 chrX 2020866 2020883 chrX 2025571 2025609 5 4709 34.5 29.5 32.0 0.2 4743 chrX 2020866 exon east + chrX 2023238 3` UTR east + chrX 2025609 exon Actn - chrX_5_2020001 chrX_2020001 RAL-142 2337 chrX 2069337 2069402 chrX 2069472 2069537 18 133 1.0 6.5 3.8 3.8 200 chrX 2069337 intron,exon CG4199 -,CG4194 + chrX 2069437 intron,3` UTR CG4199 -,CG4194 + chrX 2069537 intron,3` UTR CG4199 -,CG4194 + chrX_18_2065001 chrX_2065001 RAL-142 2338 chrX 2146635 2146685 chrX 2146747 2146790 16 118 6.5 5.0 5.8 2.4 155 chrX 2146635 intron Pgd + chrX 2146712 intron Pgd + chrX 2146790 intron Pgd + chrX_16_2145001 chrX_2145001 RAL-142 2339 chrX 2291617 2291667 chrX 2291725 2291792 21 114 4.0 1.5 2.8 5.5 175 chrX 2291617 intron CG2865 - chrX 2291704 intron CG2865 - chrX 2291792 intron CG2865 - chrX_21_2290001 chrX_2290001 RAL-142 2340 chrX 2399821 2399862 chrX 2408188 2408203 roo 14 8357 8.0 0.5 4.2 2.7 8382 chrX 2399821 intergenic not near genes chrX 2404012 intergenic not near genes chrX 2408203 intergenic not near genes chrX_14_2400001 chrX_2400001 RAL-142 2341 chrX 2559336 2559384 chrX 2559448 2559507 13 114 2.0 2.5 2.2 4.1 171 chrX 2559336 intron Pdfr + chrX 2559422 intron Pdfr + chrX 2559507 intron Pdfr + chrX_13_2555001 chrX_2555001 RAL-142 2342 chrX 2568165 2568216 chrX 2568448 2568481 10 273 3.5 4.0 3.8 2.1 316 chrX 2568165 intron Pdfr + chrX 2568323 intron Pdfr + chrX 2568481 intron Pdfr + chrX_10_2565001 chrX_2565001 RAL-142 2343 chrX 2578783 2578842 chrX 2578910 2578969 22 118 2.0 9.0 5.5 3.4 186 chrX 2578783 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578969 intergenic Vha36-3 -,Pdfr + chrX_22_2575001 chrX_2575001 RAL-142 2344 chrX 2610356 2610414 chrX 2617508 2617550 HMS-Beagle 8 7148 4.5 6.0 5.2 1.3 7194 chrX 2610356 intergenic CG8636 - chrX 2613953 intergenic not near genes chrX 2617550 intergenic Tsp3A - chrX_8_2610001 chrX_2610001 RAL-142 2345 chrX 2808900 2808920 chrX 2809014 2809015 5 111 9.0 10.5 9.8 0.5 115 chrX 2808900 intron kirre + chrX 2808958 intron kirre + chrX 2809015 intron kirre + chrX_5_2805001 chrX_2805001 RAL-142 2346 chrX 2844887 2844928 chrX 2852317 2852356 mdg1 7 7437 0.0 1.5 0.8 3.9 7469 chrX 2844887 intron kirre + chrX 2848622 intron kirre + chrX 2852356 intron kirre + chrX_7_2845001 chrX_2845001 RAL-142 2347 chrX 2877023 2877073 chrX 2877145 2877210 16 128 2.0 2.5 2.2 5.0 187 chrX 2877023 intron kirre + chrX 2877116 intron kirre + chrX 2877210 intron kirre + chrX_16_2875001 chrX_2875001 RAL-142 2348 chrX 3109412 3109470 chrX 3109524 3109581 6 105 1.0 1.5 1.2 2.7 169 chrX 3109412 intron kirre + chrX 3109496 intron kirre + chrX 3109581 intron kirre + chrX_6_3105001 chrX_3105001 RAL-142 2349 chrX 3243627 3243656 chrX 3243737 3243766 7 121 5.5 6.5 6.0 1.0 139 chrX 3243627 intron dnc + chrX 3243696 intron dnc + chrX 3243766 intron dnc + chrX_7_3240001 chrX_3240001 RAL-142 2350 chrX 3398357 3398371 chrX 3398463 3398484 4 111 2.0 10.0 6.0 0.6 127 chrX 3398357 intron,intron CR44999 +,CG12535 - chrX 3398420 intron,intron CR44999 +,CG12535 - chrX 3398484 intron,intron CR44999 +,CG12535 - chrX_4_3395001 chrX_3395001 RAL-142 2351 chrX 3476326 3476363 chrX 3476428 3476482 8 111 0.5 5.5 3.0 2.0 156 chrX 3476326 intron CR44999 + chrX 3476404 intron CR44999 + chrX 3476482 intron,3` UTR CR44999 +,CG10804 - chrX_8_3475001 chrX_3475001 RAL-142 2352 chrX 3535382 3535426 chrX 3535499 3535548 7 116 2.0 1.5 1.8 2.5 166 chrX 3535382 intron CG32791 - chrX 3535465 intron CG32791 - chrX 3535548 intron CG32791 - chrX_7_3535001 chrX_3535001 RAL-142 2353 chrX 3713090 3713132 chrX 3713234 3713275 11 142 2.0 2.5 2.2 3.4 185 chrX 3713090 intron Rala - chrX 3713182 intron Rala - chrX 3713275 intron Rala - chrX_11_3710001 chrX_3710001 RAL-142 2354 chrX 3726741 3726769 chrX 3730160 3730192 NOF 6 3422 4.5 5.5 5.0 1.0 3451 chrX 3726741 intron tlk + chrX 3728466 intron tlk + chrX 3730192 intron tlk + chrX_6_3725001 chrX_3725001 RAL-142 2355 chrX 3726776 3726795 chrX 3730157 3730180 NOF 5 3406 2.0 5.0 3.5 1.1 3404 chrX 3726776 intron tlk + chrX 3728478 intron tlk + chrX 3730180 intron tlk + chrX_5_3725001 chrX_3725001 RAL-142 2356 chrX 3842303 3842349 chrX 3842579 3842619 pogo 9 274 3.0 4.5 3.8 1.9 316 chrX 3842303 intron ec + chrX 3842461 intron ec + chrX 3842619 intron ec + chrX_9_3840001 chrX_3840001 RAL-142 2357 chrX 3866070 3866129 chrX 3866182 3866220 12 104 3.0 2.0 2.5 3.4 150 chrX 3866070 intron yin - chrX 3866145 intron yin - chrX 3866220 intron yin - chrX_12_3865001 chrX_3865001 RAL-142 2358 chrX 3881248 3881256 chrX 3881422 3881430 5 174 11.5 3.5 7.5 0.6 182 chrX 3881248 intron VhaAC39-1 + chrX 3881339 intron VhaAC39-1 + chrX 3881430 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-142 2359 chrX 3881260 3881304 chrX 3881408 3881465 20 168 3.5 1.5 2.5 5.7 205 chrX 3881260 intron VhaAC39-1 + chrX 3881362 intron VhaAC39-1 + chrX 3881465 exon VhaAC39-1 + chrX_20_3880001 chrX_3880001 RAL-142 2360 chrX 3888468 3888496 chrX 3888581 3888584 8 107 0.5 3.5 2.0 2.7 116 chrX 3888468 intron CG15239 + chrX 3888526 intron CG15239 + chrX 3888584 intron CG15239 + chrX_8_3885001 chrX_3885001 RAL-142 2361 chrX 3930008 3930062 chrX 3930124 3930178 11 116 6.0 5.5 5.8 1.6 170 chrX 3930008 5` UTR CG42541 - chrX 3930093 5` UTR CG42541 - chrX 3930178 5` UTR CG42541 - chrX_11_3930001 chrX_3930001 RAL-142 2362 chrX 3986866 3986886 chrX 3994494 3994533 412 4 7650 5.0 0.0 2.5 1.1 7667 chrX 3986866 intergenic not near genes chrX 3990700 intergenic not near genes chrX 3994533 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-142 2363 chrX 4252917 4252973 chrX 4253040 4253067 7 116 3.0 3.5 3.2 1.7 150 chrX 4252917 intergenic CG15576 - chrX 4252992 intergenic CG15576 - chrX 4253067 intergenic CG15576 - chrX_7_4250001 chrX_4250001 RAL-142 2364 chrX 4343852 4343894 chrX 4344002 4344041 8 148 2.5 4.5 3.5 1.8 189 chrX 4343852 intron norpA + chrX 4343946 intron norpA + chrX 4344041 intron norpA + chrX_8_4340001 chrX_4340001 RAL-142 2365 chrX 4358067 4358093 chrX 4358189 4358230 12 131 9.0 0.5 4.8 2.1 163 chrX 4358067 intron norpA + chrX 4358148 intron norpA + chrX 4358230 intron norpA + chrX_12_4355001 chrX_4355001 RAL-142 2366 chrX 4409104 4409162 chrX 4409223 4409237 8 113 6.5 3.5 5.0 1.3 133 chrX 4409104 intron CR32773 - chrX 4409170 intron CR32773 - chrX 4409237 intron CR32773 - chrX_8_4405001 chrX_4405001 RAL-142 2367 chrX 4410707 4410749 chrX 4411570 4411631 10 878 17.5 40.0 28.8 0.3 924 chrX 4410707 intron CR32773 - chrX 4411169 intron CR32773 - chrX 4411631 intron CR32773 - chrX_10_4410001 chrX_4410001 RAL-142 2368 chrX 4700374 4700426 chrX 4700752 4700768 jockey 9 367 3.5 2.0 2.8 2.4 394 chrX 4700374 3` UTR ctp + chrX 4700571 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_9_4700001 chrX_4700001 RAL-142 2369 chrX 4723549 4723582 chrX 4723653 4723693 10 100 11.5 5.0 8.2 1.1 144 chrX 4723549 exon Proc-R + chrX 4723621 intron Proc-R + chrX 4723693 intron Proc-R + chrX_10_4720001 chrX_4720001 RAL-142 2370 chrX 4757389 4757399 chrX 4757458 4757499 6 98 0.5 1.0 0.8 3.3 110 chrX 4757389 intergenic not near genes chrX 4757444 intergenic not near genes chrX 4757499 intergenic not near genes chrX_6_4755001 chrX_4755001 RAL-142 2371 chrX 4792370 4792396 chrX 4792822 4792826 jockey 6 452 3.0 4.0 3.5 1.3 456 chrX 4792370 intergenic not near genes chrX 4792598 intergenic not near genes chrX 4792826 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-142 2372 chrX 4827958 4828001 chrX 4835338 4835361 Stalker4 10 7373 0.5 2.5 1.5 4.0 7403 chrX 4827958 intergenic not near genes chrX 4831660 intergenic not near genes chrX 4835361 intergenic not near genes chrX_10_4830001 chrX_4830001 RAL-142 2373 chrX 4878861 4878906 chrX 4878999 4879048 4 142 1.5 0.0 0.8 2.2 187 chrX 4878861 intron CG42594 + chrX 4878954 intron CG42594 + chrX 4879048 intron CG42594 + chrX_4_4875001 chrX_4875001 RAL-142 2374 chrX 4990040 4990069 chrX 4997271 4997318 roo 4 7240 0.5 3.0 1.8 1.4 7278 chrX 4990040 intron CR44833 - chrX 4993679 intron CR44833 - chrX 4997318 intron CR44833 - chrX_4_4990001 chrX_4990001 RAL-142 2375 chrX 5020855 5020913 chrX 5020981 5021022 9 120 0.5 1.0 0.8 5.0 167 chrX 5020855 intron CR44833 - chrX 5020938 intron CR44833 - chrX 5021022 intron CR44833 - chrX_9_5020001 chrX_5020001 RAL-142 2376 chrX 5096244 5096304 chrX 5103844 5103876 springer 11 7590 0.5 6.5 3.5 2.4 7632 chrX 5096244 intron,intron CG15465 +,rg + chrX 5100060 intron,intron CG15465 +,rg + chrX 5103876 intron,intron CG15465 +,rg + chrX_11_5100001 chrX_5100001 RAL-142 2377 chrX 5473569 5473608 chrX 5473668 5473717 4 106 4.5 2.5 3.5 0.9 148 chrX 5473569 intron SPR + chrX 5473643 intron SPR + chrX 5473717 intron SPR + chrX_4_5470001 chrX_5470001 RAL-142 2378 chrX 5518710 5518751 chrX 5518817 5518841 10 110 2.5 3.0 2.8 2.6 131 chrX 5518710 3` UTR CG12730 + chrX 5518776 intergenic CG12730 + chrX 5518841 intergenic CG12730 + chrX_10_5515001 chrX_5515001 RAL-142 2379 chrX 5524812 5524857 chrX 5528706 5528725 412 7 3882 2.5 2.0 2.2 2.2 3913 chrX 5524812 intergenic snoRNA:Psi28S-3342 - chrX 5526768 intergenic not near genes chrX 5528725 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-142 2380 chrX 5727393 5727405 chrX 5732167 5732179 Doc 4 4774 4.0 7.0 5.5 0.6 4786 chrX 5727393 intron CG32758 - chrX 5729786 intron CG32758 - chrX 5732179 intron CG32758 - chrX_4_5725001 chrX_5725001 RAL-142 2381 chrX 5727406 5727415 chrX 5732164 5732189 Doc 5 4766 3.0 6.5 4.8 0.9 4783 chrX 5727406 intron CG32758 - chrX 5729798 intron CG32758 - chrX 5732189 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-142 2382 chrX 5798857 5798890 chrX 5799027 5799062 8 177 0.0 4.5 2.2 2.5 205 chrX 5798857 intergenic not near genes chrX 5798960 intergenic not near genes chrX 5799062 intergenic not near genes chrX_8_5795001 chrX_5795001 RAL-142 2383 chrX 5883795 5883836 chrX 5884050 5884109 pogo 5 269 2.0 4.5 3.2 1.2 314 chrX 5883795 intron CR45668 - chrX 5883952 intron CR45668 - chrX 5884109 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-142 2384 chrX 5884140 5884190 chrX 5884403 5884466 pogo 10 270 2.0 1.0 1.5 4.0 326 chrX 5884140 intron CR45668 - chrX 5884303 intron CR45668 - chrX 5884466 intron CR45668 - chrX_10_5880001 chrX_5880001 RAL-142 2385 chrX 6003274 6003310 chrX 6003369 6003425 10 107 1.5 4.5 3.0 2.5 151 chrX 6003274 intron CR44498 + chrX 6003350 intron CR44498 + chrX 6003425 intron CR44498 + chrX_10_6000001 chrX_6000001 RAL-142 2386 chrX 6077109 6077138 chrX 6077209 6077238 13 109 0.5 4.0 2.2 4.1 129 chrX 6077109 intron CG4666 - chrX 6077174 intron CG4666 - chrX 6077238 intron CG4666 - chrX_13_6075001 chrX_6075001 RAL-142 2387 chrX 6080815 6080828 chrX 6080916 6080920 5 103 9.5 5.0 7.2 0.6 105 chrX 6080815 intron CG4660 - chrX 6080868 intron CG4660 - chrX 6080920 intron CG4660 - chrX_5_6080001 chrX_6080001 RAL-142 2388 chrX 6118671 6118717 chrX 6118788 6118834 7 112 2.5 3.5 3.0 1.8 163 chrX 6118671 intron Ca-alpha1T - chrX 6118752 intron Ca-alpha1T - chrX 6118834 intron Ca-alpha1T - chrX_7_6115001 chrX_6115001 RAL-142 2389 chrX 6171565 6171594 chrX 6179027 6179058 Quasimodo 6 7465 6.0 3.0 4.5 1.1 7493 chrX 6171565 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179058 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-142 2390 chrX 6171596 6171603 chrX 6179024 6179071 Quasimodo 4 7453 5.5 3.0 4.2 0.8 7475 chrX 6171596 intron Ca-alpha1T - chrX 6175334 intron Ca-alpha1T - chrX 6179071 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-142 2391 chrX 6307855 6307872 chrX 6307978 6308000 5 125 11.0 6.0 8.5 0.5 145 chrX 6307855 intergenic not near genes chrX 6307928 intergenic not near genes chrX 6308000 intergenic not near genes chrX_5_6305001 chrX_6305001 RAL-142 2392 chrX 6307873 6307898 chrX 6307969 6308026 11 113 7.5 4.5 6.0 1.6 153 chrX 6307873 intergenic not near genes chrX 6307950 intergenic not near genes chrX 6308026 intergenic not near genes chrX_11_6305001 chrX_6305001 RAL-142 2393 chrX 6392860 6392900 chrX 6397649 6397664 Doc 12 4787 3.0 5.5 4.2 2.3 4804 chrX 6392860 intergenic not near genes chrX 6395262 intergenic not near genes chrX 6397664 intergenic not near genes chrX_12_6395001 chrX_6395001 RAL-142 2394 chrX 6525972 6525974 chrX 6526074 6526081 4 111 16.5 4.0 10.2 0.4 109 chrX 6525972 3` UTR CG3918 + chrX 6526026 3` UTR CG3918 + chrX 6526081 3` UTR CG3918 + chrX_4_6525001 chrX_6525001 RAL-142 2395 chrX 6525980 6526020 chrX 6526072 6526126 6 109 8.5 3.0 5.8 0.9 146 chrX 6525980 3` UTR CG3918 + chrX 6526053 3` UTR CG3918 + chrX 6526126 3` UTR,3` UTR CG3918 +,CG3342 - chrX_6_6525001 chrX_6525001 RAL-142 2396 chrX 6562789 6562848 chrX 6571305 6571354 Tirant 14 8502 6.5 5.5 6.0 2.0 8565 chrX 6562789 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571354 intron CG34417 + chrX_14_6565001 chrX_6565001 RAL-142 2397 chrX 6605456 6605498 chrX 6608511 6608538 Burdock 6 3051 2.0 2.0 2.0 2.0 3082 chrX 6605456 intron pigs + chrX 6606997 intron pigs + chrX 6608538 intron pigs + chrX_6_6605001 chrX_6605001 RAL-142 2398 chrX 6629762 6629792 chrX 6629873 6629914 15 117 2.0 1.0 1.5 6.0 152 chrX 6629762 intron pigs + chrX 6629838 intron pigs + chrX 6629914 intron pigs + chrX_15_6625001 chrX_6625001 RAL-142 2399 chrX 6792051 6792058 chrX 6792176 6792179 4 123 10.0 3.0 6.5 0.5 128 chrX 6792051 intron C3G - chrX 6792115 intron C3G - chrX 6792179 intron C3G - chrX_4_6790001 chrX_6790001 RAL-142 2400 chrX 6792063 6792085 chrX 6792175 6792186 5 116 7.0 3.0 5.0 0.8 123 chrX 6792063 intron C3G - chrX 6792124 intron C3G - chrX 6792186 intron C3G - chrX_5_6790001 chrX_6790001 RAL-142 2401 chrX 6814269 6814303 chrX 6814382 6814386 6 106 2.0 0.0 1.0 3.0 117 chrX 6814269 intron iav + chrX 6814328 intron iav + chrX 6814386 intron iav + chrX_6_6810001 chrX_6810001 RAL-142 2402 chrX 6865767 6865795 chrX 6865873 6865914 5 113 6.0 5.0 5.5 0.8 147 chrX 6865767 intron CG14434 - chrX 6865840 intron CG14434 - chrX 6865914 intron CG14434 - chrX_5_6865001 chrX_6865001 RAL-142 2403 chrX 6984589 6984652 chrX 6984701 6984747 5 106 1.5 1.5 1.5 2.0 158 chrX 6984589 intron ogre - chrX 6984668 intron ogre - chrX 6984747 intron ogre - chrX_5_6980001 chrX_6980001 RAL-142 2404 chrX 6989481 6989514 chrX 6989603 6989636 7 121 4.0 4.0 4.0 1.4 155 chrX 6989481 intron ogre - chrX 6989558 intron ogre - chrX 6989636 intron ogre - chrX_7_6985001 chrX_6985001 RAL-142 2405 chrX 6995749 6995784 chrX 6996072 6996082 6 318 7.0 3.0 5.0 1.0 333 chrX 6995749 intron Inx7 - chrX 6995916 intron,3` UTR Inx7 -,CR43837 - chrX 6996082 intron,3` UTR Inx7 -,CR43837 - chrX_6_6995001 chrX_6995001 RAL-142 2406 chrX 7023571 7023605 chrX 7030996 7030998 Tabor 5 7417 6.0 5.5 5.8 0.7 7427 chrX 7023571 intron CG12541 - chrX 7027284 intron CG12541 - chrX 7030998 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-142 2407 chrX 7023607 7023633 chrX 7030994 7031013 Tabor 5 7396 3.0 5.5 4.2 1.0 7406 chrX 7023607 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031013 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-142 2408 chrX 7125222 7125268 chrX 7134411 7134462 roo 7 9189 0.0 3.0 1.5 2.8 9240 chrX 7125222 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134462 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-142 2409 chrX 7204205 7204271 chrX 7204600 7204643 14 381 5.0 7.0 6.0 2.0 438 chrX 7204205 intron,intron CG9650 +,CR44357 - chrX 7204424 intron,intron CG9650 +,CR44357 - chrX 7204643 intron,intron CG9650 +,CR44357 - chrX_14_7200001 chrX_7200001 RAL-142 2410 chrX 7277039 7277081 chrX 7277151 7277193 4 106 4.5 7.5 6.0 0.6 154 chrX 7277039 intron CR44357 - chrX 7277116 intron CR44357 - chrX 7277193 intron CR44357 - chrX_4_7275001 chrX_7275001 RAL-142 2411 chrX 7294502 7294541 chrX 7294617 7294648 5 112 4.0 6.0 5.0 0.8 146 chrX 7294502 intron,intron CR44357 -,CG1677 - chrX 7294575 intron,intron CR44357 -,CG1677 - chrX 7294648 intron,intron CR44357 -,CG1677 - chrX_5_7290001 chrX_7290001 RAL-142 2412 chrX 7381128 7381170 chrX 7381246 7381288 7 118 2.0 2.0 2.0 2.3 160 chrX 7381128 intron,intron CR44357 -,CG1677 - chrX 7381208 intron,intron CR44357 -,CG1677 - chrX 7381288 intron,intron CR44357 -,CG1677 - chrX_7_7380001 chrX_7380001 RAL-142 2413 chrX 7413085 7413117 chrX 7413524 7413562 5 444 2.5 0.0 1.2 2.3 477 chrX 7413085 exon CG42704 + chrX 7413324 intergenic CG42704 + chrX 7413562 intergenic CG42704 +,CG42705 + chrX_5_7410001 chrX_7410001 RAL-142 2414 chrX 7488003 7488044 chrX 7488153 7488180 5 147 4.0 5.5 4.8 0.9 177 chrX 7488003 5` UTR CR45534 + chrX 7488092 5` UTR CR45534 + chrX 7488180 5` UTR CR45534 + chrX_5_7485001 chrX_7485001 RAL-142 2415 chrX 7702872 7702924 chrX 7703345 7703380 jockey 12 464 13.0 6.5 9.8 1.1 508 chrX 7702872 intron CHES-1-like - chrX 7703126 intron CHES-1-like - chrX 7703380 intron CHES-1-like - chrX_12_7700001 chrX_7700001 RAL-142 2416 chrX 7752892 7752955 chrX 7753004 7753051 16 106 7.5 6.5 7.0 2.0 159 chrX 7752892 intergenic not near genes chrX 7752972 intergenic not near genes chrX 7753051 intergenic not near genes chrX_16_7750001 chrX_7750001 RAL-142 2417 chrX 7881836 7881880 chrX 7881936 7881992 13 112 1.5 5.0 3.2 3.1 156 chrX 7881836 intergenic Ir7f -,Ir7e - chrX 7881914 intergenic Ir7f -,Ir7e - chrX 7881992 3` UTR Ir7f - chrX_13_7880001 chrX_7880001 RAL-142 2418 chrX 7960843 7960902 chrX 7960967 7961019 22 120 5.0 4.5 4.8 3.8 176 chrX 7960843 intron,5` UTR sws -,CR45620 + chrX 7960931 intron sws - chrX 7961019 intron sws - chrX_22_7960001 chrX_7960001 RAL-142 2419 chrX 8012841 8012855 chrX 8012917 8012960 4 84 5.5 6.0 5.8 0.6 119 chrX 8012841 intron Tbh + chrX 8012900 intron Tbh + chrX 8012960 intron Tbh + chrX_4_8010001 chrX_8010001 RAL-142 2420 chrX 8031409 8031439 chrX 8035751 8035783 Juan 9 4343 6.0 3.0 4.5 1.6 4374 chrX 8031409 intergenic not near genes chrX 8033596 intergenic not near genes chrX 8035783 3` UTR CG2233 - chrX_9_8030001 chrX_8030001 RAL-142 2421 chrX 8085548 8085603 chrX 8085658 8085707 19 115 4.5 5.0 4.8 3.3 159 chrX 8085548 intron,5` UTR CG2256 -,CR45535 + chrX 8085628 intron,5` UTR CG2256 -,CR45535 + chrX 8085707 intron,5` UTR CG2256 -,CR45535 + chrX_19_8085001 chrX_8085001 RAL-142 2422 chrX 8092258 8092318 chrX 8092378 8092438 7 116 1.5 4.0 2.8 1.8 180 chrX 8092258 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092438 intron Ubc-E2H - chrX_7_8090001 chrX_8090001 RAL-142 2423 chrX 8305157 8305223 chrX 8305273 8305306 8 97 4.5 2.0 3.2 1.9 149 chrX 8305157 intron nAChRalpha3 - chrX 8305232 intron nAChRalpha3 - chrX 8305306 intron nAChRalpha3 - chrX_8_8305001 chrX_8305001 RAL-142 2424 chrX 8490499 8490527 chrX 8490629 8490630 4 120 13.0 2.5 7.8 0.5 131 chrX 8490499 intron CG33181 + chrX 8490564 intron CG33181 + chrX 8490630 intron CG33181 + chrX_4_8490001 chrX_8490001 RAL-142 2425 chrX 8490532 8490559 chrX 8490628 8490692 8 118 6.0 2.5 4.2 1.5 160 chrX 8490532 intron CG33181 + chrX 8490612 intron CG33181 + chrX 8490692 intron CG33181 + chrX_8_8490001 chrX_8490001 RAL-142 2426 chrX 8500903 8500934 chrX 8501102 8501130 16 196 10.0 0.0 5.0 2.7 227 chrX 8500903 intron CG33181 + chrX 8501016 intron CG33181 + chrX 8501130 intron CG33181 + chrX_16_8500001 chrX_8500001 RAL-142 2427 chrX 8506505 8506561 chrX 8506736 8506773 10 234 2.5 3.5 3.0 2.5 268 chrX 8506505 intron CG33181 + chrX 8506639 intron CG33181 + chrX 8506773 intron CG33181 + chrX_10_8505001 chrX_8505001 RAL-142 2428 chrX 8509090 8509151 chrX 8509202 8509258 8 110 1.5 1.5 1.5 3.2 168 chrX 8509090 intron CG33181 + chrX 8509174 intron CG33181 + chrX 8509258 intron CG33181 + chrX_8_8505001 chrX_8505001 RAL-142 2429 chrX 8513068 8513124 chrX 8513358 8513426 27 297 4.0 3.0 3.5 6.0 358 chrX 8513068 intron CG33181 + chrX 8513247 intron CG33181 + chrX 8513426 intron CG33181 + chrX_27_8510001 chrX_8510001 RAL-142 2430 chrX 8658679 8658705 chrX 8658797 8658799 4 108 8.0 0.5 4.2 0.8 120 chrX 8658679 intergenic not near genes chrX 8658739 intergenic not near genes chrX 8658799 intergenic not near genes chrX_4_8655001 chrX_8655001 RAL-142 2431 chrX 8708693 8708721 chrX 8708850 8708869 8 160 43.5 19.0 31.2 0.2 176 chrX 8708693 intergenic not near genes chrX 8708781 intergenic not near genes chrX 8708869 intergenic not near genes chrX_8_8705001 chrX_8705001 RAL-142 2432 chrX 8708689 8708752 chrX 8708873 8708900 16 159 38.5 19.5 29.0 0.5 211 chrX 8708689 intergenic not near genes chrX 8708794 intergenic not near genes chrX 8708900 intergenic not near genes chrX_16_8705001 chrX_8705001 RAL-142 2433 chrX 8727372 8727415 chrX 8727484 8727526 10 112 1.5 2.5 2.0 3.3 154 chrX 8727372 intergenic not near genes chrX 8727449 intergenic not near genes chrX 8727526 intergenic not near genes chrX_10_8725001 chrX_8725001 RAL-142 2434 chrX 8730441 8730463 chrX 8730552 8730568 9 106 1.5 9.5 5.5 1.4 127 chrX 8730441 intergenic not near genes chrX 8730504 intergenic not near genes chrX 8730568 intergenic not near genes chrX_9_8730001 chrX_8730001 RAL-142 2435 chrX 8922311 8922339 chrX 8922765 8922807 jockey 14 462 8.5 6.5 7.5 1.6 496 chrX 8922311 intron rdgA + chrX 8922559 intron rdgA + chrX 8922807 intron rdgA + chrX_14_8920001 chrX_8920001 RAL-142 2436 chrX 8922340 8922360 chrX 8922762 8922799 jockey 7 435 6.0 6.0 6.0 1.0 459 chrX 8922340 intron rdgA + chrX 8922570 intron rdgA + chrX 8922799 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-142 2437 chrX 8948760 8948788 chrX 8956269 8956288 roo 5 7527 1.5 2.0 1.8 1.8 7528 chrX 8948760 intron rdgA + chrX 8952524 intron rdgA + chrX 8956288 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-142 2438 chrX 9062705 9062746 chrX 9062808 9062859 9 110 1.0 0.0 0.5 6.0 154 chrX 9062705 intron CG15365 - chrX 9062782 intron CG15365 - chrX 9062859 intron CG15365 - chrX_9_9060001 chrX_9060001 RAL-142 2439 chrX 9218062 9218084 chrX 9218171 9218195 13 115 11.0 1.0 6.0 1.9 133 chrX 9218062 3` UTR t - chrX 9218128 3` UTR t - chrX 9218195 3` UTR t - chrX_13_9215001 chrX_9215001 RAL-142 2440 chrX 9229875 9229932 chrX 9229990 9229991 9 108 4.0 3.5 3.8 1.9 116 chrX 9229875 intron CG12121 - chrX 9229933 intron CG12121 - chrX 9229991 intron CG12121 - chrX_9_9225001 chrX_9225001 RAL-142 2441 chrX 9314367 9314402 chrX 9314474 9314518 9 104 3.0 3.5 3.2 2.1 151 chrX 9314367 intergenic CR44534 + chrX 9314442 intergenic CR44534 + chrX 9314518 intergenic CR44534 + chrX_9_9310001 chrX_9310001 RAL-142 2442 chrX 9337929 9337971 chrX 9338035 9338083 20 112 2.5 4.0 3.2 4.8 154 chrX 9337929 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338083 exon CG34449 - chrX_20_9335001 chrX_9335001 RAL-142 2443 chrX 9508104 9508161 chrX 9509657 9509709 jockey 15 1547 2.5 6.0 4.2 2.9 1605 chrX 9508104 intron CG32700 - chrX 9508906 intron CG32700 - chrX 9509709 intron CG32700 - chrX_15_9505001 chrX_9505001 RAL-142 2444 chrX 9543387 9543426 chrX 9543501 9543528 6 107 1.0 2.0 1.5 2.4 141 chrX 9543387 intron CG32700 - chrX 9543458 intron CG32700 - chrX 9543528 intron CG32700 - chrX_6_9540001 chrX_9540001 RAL-142 2445 chrX 9575798 9575801 chrX 9576114 9576160 mdg3 5 334 16.0 3.5 9.8 0.5 362 chrX 9575798 intron,exon CG32699 -,CG42395 - chrX 9575979 intron,intron CG32699 -,CG42395 - chrX 9576160 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-142 2446 chrX 9575804 9575810 chrX 9576113 9576156 mdg3 6 336 15.5 3.0 9.2 0.6 352 chrX 9575804 intron,exon CG32699 -,CG42395 - chrX 9575980 intron,intron CG32699 -,CG42395 - chrX 9576156 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-142 2447 chrX 9577018 9577061 chrX 9577487 9577546 10 476 4.0 4.0 4.0 2.0 528 chrX 9577018 intron CG32699 - chrX 9577282 intron CG32699 - chrX 9577546 intron CG32699 - chrX_10_9575001 chrX_9575001 RAL-142 2448 chrX 9758042 9758061 chrX 9758132 9758181 5 114 2.5 0.0 1.2 2.3 139 chrX 9758042 intergenic not near genes chrX 9758112 intergenic not near genes chrX 9758181 intergenic not near genes chrX_5_9755001 chrX_9755001 RAL-142 2449 chrX 9791833 9791895 chrX 9791965 9792015 9 122 2.5 2.0 2.2 2.8 182 chrX 9791833 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9792015 intron CG32698 + chrX_9_9790001 chrX_9790001 RAL-142 2450 chrX 9923375 9923387 chrX 9923493 9923499 4 114 12.5 8.5 10.5 0.3 124 chrX 9923375 intergenic not near genes chrX 9923437 intergenic not near genes chrX 9923499 intergenic not near genes chrX_4_9920001 chrX_9920001 RAL-142 2451 chrX 9923394 9923423 chrX 9923490 9923539 6 101 4.0 8.0 6.0 0.9 145 chrX 9923394 intergenic not near genes chrX 9923466 intergenic not near genes chrX 9923539 intergenic not near genes chrX_6_9920001 chrX_9920001 RAL-142 2452 chrX 10138196 10138248 chrX 10145725 10145767 412 11 7533 2.5 2.5 2.5 3.1 7571 chrX 10138196 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145767 intron,intron RhoU +,CR44894 - chrX_11_10140001 chrX_10140001 RAL-142 2453 chrX 10191645 10191660 chrX 10191725 10191736 6 77 7.0 2.0 4.5 1.1 91 chrX 10191645 intron,exon CR44894 -,CG43902 + chrX 10191690 intron,exon CR44894 -,CG43902 + chrX 10191736 intron,exon CR44894 -,CG43902 + chrX_6_10190001 chrX_10190001 RAL-142 2454 chrX 10216827 10216852 chrX 10216926 10216942 6 93 9.5 9.5 9.5 0.6 115 chrX 10216827 3` UTR l(1)G0230 + chrX 10216884 3` UTR l(1)G0230 + chrX 10216942 3` UTR l(1)G0230 + chrX_6_10215001 chrX_10215001 RAL-142 2455 chrX 10267313 10267318 chrX 10276492 10276503 roo 4 9184 0.5 6.0 3.2 1.0 9190 chrX 10267313 3` UTR alpha-Man-I - chrX 10271908 intron alpha-Man-I - chrX 10276503 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-142 2456 chrX 10317527 10317534 chrX 10317640 10317647 4 112 0.0 5.0 2.5 1.1 120 chrX 10317527 intron alpha-Man-I - chrX 10317587 intron alpha-Man-I - chrX 10317647 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-142 2457 chrX 10317537 10317582 chrX 10317634 10317695 10 111 0.0 4.0 2.0 3.3 158 chrX 10317537 intron alpha-Man-I - chrX 10317616 intron alpha-Man-I - chrX 10317695 intron alpha-Man-I - chrX_10_10315001 chrX_10315001 RAL-142 2458 chrX 10343441 10343500 chrX 10343668 10343727 8 221 3.5 4.0 3.8 1.7 286 chrX 10343441 intron CG43740 + chrX 10343584 intron CG43740 + chrX 10343727 intron CG43740 + chrX_8_10340001 chrX_10340001 RAL-142 2459 chrX 10348785 10348818 chrX 10356365 10356403 springer 7 7584 12.0 5.0 8.5 0.7 7618 chrX 10348785 intergenic snoRNA:U3:9B + chrX 10352594 intergenic not near genes chrX 10356403 intergenic l(1)G0289 - chrX_7_10350001 chrX_10350001 RAL-142 2460 chrX 10401397 10401425 chrX 10401503 10401526 5 107 2.0 3.5 2.8 1.3 129 chrX 10401397 intron flw + chrX 10401462 intron flw + chrX 10401526 intron flw + chrX_5_10400001 chrX_10400001 RAL-142 2461 chrX 10550843 10550879 chrX 10552325 10552355 hobo 4 1480 2.0 3.5 2.8 1.1 1512 chrX 10550843 intron spri - chrX 10551599 intron spri - chrX 10552355 intron spri - chrX_4_10550001 chrX_10550001 RAL-142 2462 chrX 10686026 10686082 chrX 10691198 10691253 roo 11 5169 2.5 0.0 1.2 5.0 5227 chrX 10686026 intron X11Lbeta + chrX 10688640 intron X11Lbeta + chrX 10691253 intron X11Lbeta + chrX_11_10685001 chrX_10685001 RAL-142 2463 chrX 10772639 10772697 chrX 10772757 10772802 Tirant 9 105 9.0 1.5 5.2 1.5 163 chrX 10772639 intron CG15211 + chrX 10772720 intron CG15211 + chrX 10772802 intron CG15211 + chrX_9_10770001 chrX_10770001 RAL-142 2464 chrX 10803016 10803049 chrX 10803131 10803169 6 114 5.0 8.0 6.5 0.8 153 chrX 10803016 intron Imp - chrX 10803092 intron Imp - chrX 10803169 intron Imp - chrX_6_10800001 chrX_10800001 RAL-142 2465 chrX 10864114 10864166 chrX 10864251 10864298 9 136 5.5 2.0 3.8 1.9 184 chrX 10864114 3` UTR CG2186 + chrX 10864206 3` UTR CG2186 + chrX 10864298 3` UTR CG2186 + chrX_9_10860001 chrX_10860001 RAL-142 2466 chrX 10876584 10876649 chrX 10876697 10876762 5 107 2.0 7.0 4.5 0.9 178 chrX 10876584 intron CG1637 - chrX 10876673 intron CG1637 - chrX 10876762 intron CG1637 - chrX_5_10875001 chrX_10875001 RAL-142 2467 chrX 11052021 11052081 chrX 11052132 11052194 17 96 4.0 2.0 3.0 4.2 173 chrX 11052021 intergenic CG1552 - chrX 11052108 intergenic CG1552 - chrX 11052194 3` UTR CG1552 - chrX_17_11050001 chrX_11050001 RAL-142 2468 chrX 11069130 11069192 chrX 11069308 11069345 7 170 1.5 0.0 0.8 3.9 215 chrX 11069130 intergenic not near genes chrX 11069238 intergenic not near genes chrX 11069345 intergenic not near genes chrX_7_11065001 chrX_11065001 RAL-142 2469 chrX 11095967 11096014 chrX 11103104 11103151 HMS-Beagle 16 7136 7.0 7.0 7.0 2.0 7184 chrX 11095967 intergenic not near genes chrX 11099559 intergenic not near genes chrX 11103151 intron CG42249 + chrX_16_11095001 chrX_11095001 RAL-142 2470 chrX 11109417 11109417 chrX 12946233 12946235 8 1836817 23.5 18.5 21.0 0.4 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_8_12025001 chrX_12025001 RAL-142 2471 chrX 11124041 11124054 chrX 11124117 11124133 5 93 6.5 4.0 5.2 0.8 92 chrX 11124041 5` UTR CG11122 - chrX 11124087 5` UTR CG11122 - chrX 11124133 5` UTR CG11122 - chrX_5_11120001 chrX_11120001 RAL-142 2472 chrX 11312048 11312093 chrX 11319410 11319460 Stalker2 7 7349 1.5 1.0 1.2 3.2 7412 chrX 11312048 intergenic not near genes chrX 11315754 intergenic not near genes chrX 11319460 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-142 2473 chrX 11360458 11360488 chrX 11360681 11360707 9 221 14.0 11.5 12.8 0.7 249 chrX 11360458 3` UTR Pa1 + chrX 11360582 3` UTR Pa1 + chrX 11360707 3` UTR Pa1 + chrX_9_11360001 chrX_11360001 RAL-142 2474 chrX 11572550 11572599 chrX 11572675 11572719 8 123 30.0 30.5 30.2 0.3 169 chrX 11572550 intergenic Kmn1 -,CG11697 + chrX 11572634 intergenic CG11697 +,Kmn1 - chrX 11572719 5` UTR CG11697 + chrX_8_11570001 chrX_11570001 RAL-142 2475 chrX 11633388 11633440 chrX 11640477 11640529 297 6 7086 1.0 2.0 1.5 2.4 7141 chrX 11633388 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640529 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-142 2476 chrX 11657871 11657926 chrX 11658000 11658041 5 121 0.0 3.5 1.8 1.8 170 chrX 11657871 intron Ptp10D + chrX 11657956 intron Ptp10D + chrX 11658041 intron Ptp10D + chrX_5_11655001 chrX_11655001 RAL-142 2477 chrX 11804652 11804685 chrX 11804789 11804824 10 137 4.5 2.0 3.2 2.4 172 chrX 11804652 intron Hsc70-3 - chrX 11804738 intron Hsc70-3 - chrX 11804824 intron Hsc70-3 - chrX_10_11800001 chrX_11800001 RAL-142 2478 chrX 11806604 11806672 chrX 11806739 11806796 6 120 0.0 3.0 1.5 2.4 192 chrX 11806604 intron Hsc70-3 - chrX 11806700 intron Hsc70-3 - chrX 11806796 intron Hsc70-3 - chrX_6_11805001 chrX_11805001 RAL-142 2479 chrX 11880907 11880921 chrX 11881009 11881038 5 114 9.0 4.5 6.8 0.6 131 chrX 11880907 exon CG10353 - chrX 11880972 intron CG10353 - chrX 11881038 intron CG10353 - chrX_5_11880001 chrX_11880001 RAL-142 2480 chrX 11922364 11922383 chrX 11922504 11922551 4 161 3.0 2.5 2.8 1.1 187 chrX 11922364 exon Sclp - chrX 11922458 intron Sclp - chrX 11922551 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-142 2481 chrX 12136440 12136502 chrX 12136553 12136607 5 107 0.0 3.5 1.8 1.8 167 chrX 12136440 intron Ten-a + chrX 12136524 intron Ten-a + chrX 12136607 intron Ten-a + chrX_5_12135001 chrX_12135001 RAL-142 2482 chrX 12168110 12168141 chrX 12173587 12173588 I-element 5 5471 2.0 1.5 1.8 1.8 5478 chrX 12168110 intron Ten-a + chrX 12170849 intron Ten-a + chrX 12173588 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-142 2483 chrX 12231183 12231217 chrX 12231305 12231337 16 118 5.5 6.0 5.8 2.4 154 chrX 12231183 intron Ten-a + chrX 12231260 intron Ten-a + chrX 12231337 intron Ten-a + chrX_16_12230001 chrX_12230001 RAL-142 2484 chrX 12272810 12272870 chrX 12272924 12272984 14 112 2.5 7.0 4.8 2.4 174 chrX 12272810 intron Ten-a + chrX 12272897 intron Ten-a + chrX 12272984 intron Ten-a + chrX_14_12270001 chrX_12270001 RAL-142 2485 chrX 12277168 12277210 chrX 12277279 12277327 4 116 5.0 4.5 4.8 0.7 159 chrX 12277168 intron Ten-a + chrX 12277248 intron Ten-a + chrX 12277327 intron Ten-a + chrX_4_12275001 chrX_12275001 RAL-142 2486 chrX 12350747 12350791 chrX 12350858 12350876 7 103 3.0 0.5 1.8 2.5 129 chrX 12350747 intergenic not near genes chrX 12350812 intergenic not near genes chrX 12350876 intergenic not near genes chrX_7_12350001 chrX_12350001 RAL-142 2487 chrX 12419546 12419578 chrX 12419661 12419700 5 120 2.0 4.0 3.0 1.2 154 chrX 12419546 intergenic not near genes chrX 12419623 intergenic not near genes chrX 12419700 intergenic not near genes chrX_5_12415001 chrX_12415001 RAL-142 2488 chrX 12421204 12421503 chrX 12421324 12421593 18 112 1.5 4.5 3.0 4.5 389 chrX 12421204 intergenic not near genes chrX 12421398 intergenic not near genes chrX 12421593 intergenic not near genes chrX_18_12420001 chrX_12420001 RAL-142 2489 chrX 12465456 12465485 chrX 12465549 12465596 5 93 2.0 0.0 1.0 2.5 140 chrX 12465456 exon CG42258 + chrX 12465526 intron CG42258 + chrX 12465596 intron CG42258 + chrX_5_12465001 chrX_12465001 RAL-142 2490 chrX 12499909 12499940 chrX 12500078 12500109 5 164 5.0 2.0 3.5 1.1 200 chrX 12499909 intron CG2556 + chrX 12500009 intron CG2556 + chrX 12500109 intron CG2556 + chrX_5_12500001 chrX_12500001 RAL-142 2491 chrX 12499943 12499970 chrX 12500077 12500107 8 150 1.0 2.0 1.5 3.2 164 chrX 12499943 intron CG2556 + chrX 12500025 intron CG2556 + chrX 12500107 intron CG2556 + chrX_8_12500001 chrX_12500001 RAL-142 2492 chrX 12509879 12509921 chrX 12509991 12510033 7 107 3.0 2.0 2.5 2.0 154 chrX 12509879 intron CG2556 + chrX 12509956 intron CG2556 + chrX 12510033 intron CG2556 + chrX_7_12505001 chrX_12505001 RAL-142 2493 chrX 12511289 12511351 chrX 12511406 12511477 4 119 0.0 2.0 1.0 2.0 188 chrX 12511289 intron CG2556 + chrX 12511383 intron CG2556 + chrX 12511477 intron CG2556 + chrX_4_12510001 chrX_12510001 RAL-142 2494 chrX 12533769 12533814 chrX 12533881 12533923 5 111 0.0 4.5 2.2 1.6 154 chrX 12533769 intron CG43921 - chrX 12533846 intron CG43921 - chrX 12533923 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-142 2495 chrX 9845361 9845361 chrX 12546495 12546496 gypsy5 9 2701135 13.0 29.0 21.0 0.4 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_9_11195001 chrX_11195001 RAL-142 2496 chrX 12752245 12752293 chrX 12752367 12752414 13 116 6.0 4.0 5.0 2.2 169 chrX 12752245 5` UTR CR44619 + chrX 12752330 5` UTR CR44619 + chrX 12752414 5` UTR CR44619 + chrX_13_12750001 chrX_12750001 RAL-142 2497 chrX 12785405 12785443 chrX 12785505 12785555 10 102 5.0 6.0 5.5 1.5 150 chrX 12785405 intergenic Pde9 -,CG32647 - chrX 12785480 intergenic Pde9 - chrX 12785555 intergenic Pde9 - chrX_10_12785001 chrX_12785001 RAL-142 2498 chrX 11109417 11109417 chrX 12946235 12946235 4 1836818 23.5 18.5 21.0 0.2 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-142 2499 chrX 12971692 12971716 chrX 12971768 12971810 6 90 3.0 3.0 3.0 1.5 118 chrX 12971692 intron,exon CR43636 -,CG15721 + chrX 12971751 intron,exon CR43636 -,CG15721 + chrX 12971810 intron,exon CR43636 -,CG15721 + chrX_6_12970001 chrX_12970001 RAL-142 2500 chrX 13146576 13146613 chrX 13146690 13146736 6 118 3.0 1.0 2.0 2.0 160 chrX 13146576 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146736 intron CG32645 + chrX_6_13145001 chrX_13145001 RAL-142 2501 chrX 13236851 13236898 chrX 13236968 13237018 6 108 0.5 4.0 2.2 1.9 167 chrX 13236851 intron mew - chrX 13236934 intron mew - chrX 13237018 intron mew - chrX_6_13235001 chrX_13235001 RAL-142 2502 chrX 13272146 13272178 chrX 13272256 13272290 4 108 4.5 7.0 5.8 0.6 144 chrX 13272146 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272290 intron HDAC4 - chrX_4_13270001 chrX_13270001 RAL-142 2503 chrX 13278135 13278180 chrX 13278243 13278298 19 116 6.5 3.0 4.8 3.3 163 chrX 13278135 intron HDAC4 - chrX 13278216 intron HDAC4 - chrX 13278298 intron HDAC4 - chrX_19_13275001 chrX_13275001 RAL-142 2504 chrX 13401465 13401516 chrX 13401836 13401900 jockey 7 384 2.5 5.0 3.8 1.5 435 chrX 13401465 intergenic CG1673 +,CG12725 - chrX 13401682 intergenic CG12725 -,CG1673 + chrX 13401900 3` UTR CG12725 - chrX_7_13400001 chrX_13400001 RAL-142 2505 chrX 13429435 13429462 chrX 13430619 13430641 jockey 6 1174 13.0 8.0 10.5 0.5 1206 chrX 13429435 intergenic not near genes chrX 13430038 intergenic not near genes chrX 13430641 intergenic not near genes chrX_6_13430001 chrX_13430001 RAL-142 2506 chrX 13429464 13429492 chrX 13430610 13430644 jockey 10 1168 7.5 7.0 7.2 1.2 1180 chrX 13429464 intergenic not near genes chrX 13430054 intergenic not near genes chrX 13430644 intergenic not near genes chrX_10_13430001 chrX_13430001 RAL-142 2507 chrX 13463615 13463661 chrX 13469227 13469269 mdg3 9 5610 4.0 3.0 3.5 2.0 5654 chrX 13463615 intron Neto + chrX 13466442 intron Neto + chrX 13469269 intron Neto + chrX_9_13465001 chrX_13465001 RAL-142 2508 chrX 13593186 13593220 chrX 13593301 13593319 7 112 3.0 0.0 1.5 2.8 133 chrX 13593186 3` UTR Tango13 + chrX 13593252 intergenic Tango13 +,up - chrX 13593319 intergenic Tango13 +,up - chrX_7_13590001 chrX_13590001 RAL-142 2509 chrX 13743773 13743811 chrX 13743880 13743920 8 110 4.5 0.5 2.5 2.3 147 chrX 13743773 intron Grip91 - chrX 13743846 intron Grip91 - chrX 13743920 intron Grip91 - chrX_8_13740001 chrX_13740001 RAL-142 2510 chrX 13935481 13935524 chrX 13935599 13935622 17 109 6.0 9.0 7.5 2.0 141 chrX 13935481 intron mamo - chrX 13935552 intron mamo - chrX 13935622 intron mamo - chrX_17_13935001 chrX_13935001 RAL-142 2511 chrX 13937954 13937976 chrX 13941249 13941271 I-element 4 3300 3.5 2.5 3.0 1.0 3317 chrX 13937954 intron mamo - chrX 13939612 intron mamo - chrX 13941271 intron mamo - chrX_4_13935001 chrX_13935001 RAL-142 2512 chrX 13937977 13937993 chrX 13941245 13941299 I-element 6 3294 2.0 2.0 2.0 2.0 3322 chrX 13937977 intron mamo - chrX 13939638 intron mamo - chrX 13941299 intron mamo - chrX_6_13935001 chrX_13935001 RAL-142 2513 chrX 14064139 14064158 chrX 14064256 14064290 6 126 0.0 1.0 0.5 4.0 151 chrX 14064139 intergenic not near genes chrX 14064214 intergenic not near genes chrX 14064290 intergenic not near genes chrX_6_14060001 chrX_14060001 RAL-142 2514 chrX 14105020 14105049 chrX 14114172 14114235 roo 7 9173 4.5 3.0 3.8 1.5 9215 chrX 14105020 intergenic not near genes chrX 14109628 intergenic not near genes chrX 14114235 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-142 2515 chrX 14131445 14131522 chrX 14131568 14131610 10 88 3.5 5.5 4.5 1.8 165 chrX 14131445 intergenic not near genes chrX 14131528 intergenic not near genes chrX 14131610 intergenic not near genes chrX_10_14130001 chrX_14130001 RAL-142 2516 chrX 14167378 14167431 chrX 14167507 14167561 8 128 1.0 1.5 1.2 3.6 183 chrX 14167378 intergenic not near genes chrX 14167470 intergenic not near genes chrX 14167561 intergenic not near genes chrX_8_14165001 chrX_14165001 RAL-142 2517 chrX 14182720 14182743 chrX 14182787 14182825 4 76 3.5 1.5 2.5 1.1 105 chrX 14182720 exon CG11584 + chrX 14182772 exon CG11584 + chrX 14182825 exon CG11584 + chrX_4_14180001 chrX_14180001 RAL-142 2518 chrX 14209434 14209489 chrX 14209559 14209614 16 121 7.0 5.0 6.0 2.3 180 chrX 14209434 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209524 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209614 intron,intron l(1)G0007 +,l(1)G0469 - chrX_16_14205001 chrX_14205001 RAL-142 2519 chrX 14274899 14274908 chrX 14275034 14275043 4 134 1.0 0.0 0.5 2.7 144 chrX 14274899 intron na + chrX 14274971 intron na + chrX 14275043 intron na + chrX_4_14270001 chrX_14270001 RAL-142 2520 chrX 14312740 14312798 chrX 14312856 14312908 9 114 2.5 1.5 2.0 3.0 168 chrX 14312740 intergenic not near genes chrX 14312824 intergenic not near genes chrX 14312908 intergenic not near genes chrX_9_14310001 chrX_14310001 RAL-142 2521 chrX 14416297 14416337 chrX 14421082 14421128 F-element 8 4797 2.0 6.0 4.0 1.6 4831 chrX 14416297 intron dpr8 + chrX 14418712 intron dpr8 + chrX 14421128 intron dpr8 + chrX_8_14415001 chrX_14415001 RAL-142 2522 chrX 14560262 14560267 chrX 14560370 14560386 4 114 6.0 11.5 8.8 0.4 124 chrX 14560262 intergenic not near genes chrX 14560324 intergenic not near genes chrX 14560386 intergenic not near genes chrX_4_14560001 chrX_14560001 RAL-142 2523 chrX 14560270 14560297 chrX 14560359 14560416 15 108 2.5 9.5 6.0 2.1 146 chrX 14560270 intergenic not near genes chrX 14560343 intergenic not near genes chrX 14560416 intergenic not near genes chrX_15_14560001 chrX_14560001 RAL-142 2524 chrX 14589686 14589703 chrX 14589943 14589956 pogo 4 258 2.5 1.0 1.8 1.4 270 chrX 14589686 intron CG9413 - chrX 14589821 intron CG9413 - chrX 14589956 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-142 2525 chrX 14636453 14636485 chrX 14641904 14641961 I-element 6 5464 2.5 1.5 2.0 2.0 5508 chrX 14636453 intron NetA - chrX 14639207 intron NetA - chrX 14641961 intron NetA - chrX_6_14635001 chrX_14635001 RAL-142 2526 chrX 14762171 14762203 chrX 14762285 14762288 7 107 5.0 10.5 7.8 0.8 117 chrX 14762171 intron CG15890 - chrX 14762230 intron CG15890 - chrX 14762288 intron CG15890 - chrX_7_14760001 chrX_14760001 RAL-142 2527 chrX 14767933 14767971 chrX 14768042 14768043 7 105 0.5 1.5 1.0 3.5 110 chrX 14767933 intergenic not near genes chrX 14767988 intergenic not near genes chrX 14768043 intergenic not near genes chrX_7_14765001 chrX_14765001 RAL-142 2528 chrX 14774947 14775005 chrX 14775059 14775117 7 112 1.0 1.5 1.2 3.2 170 chrX 14774947 intergenic CG5334 + chrX 14775032 intergenic CG5334 + chrX 14775117 intergenic CG5334 + chrX_7_14775001 chrX_14775001 RAL-142 2529 chrX 14778001 14778041 chrX 14782833 14782873 Doc 13 4831 9.5 3.0 6.2 1.8 4872 chrX 14778001 intergenic CG5347 + chrX 14780437 intergenic not near genes chrX 14782873 intergenic Ag5r2 - chrX_13_14780001 chrX_14780001 RAL-142 2530 chrX 14796580 14796606 chrX 14796699 14796725 9 118 6.5 3.0 4.8 1.6 145 chrX 14796580 intron rut - chrX 14796652 intron rut - chrX 14796725 intron rut - chrX_9_14795001 chrX_14795001 RAL-142 2531 chrX 14799676 14799726 chrX 14799790 14799850 17 122 3.5 7.5 5.5 2.6 174 chrX 14799676 intron rut - chrX 14799763 intron rut - chrX 14799850 intron rut - chrX_17_14795001 chrX_14795001 RAL-142 2532 chrX 14818755 14818798 chrX 14823968 14823995 copia 8 5212 2.5 2.5 2.5 2.3 5240 chrX 14818755 intron rut - chrX 14821375 intron rut - chrX 14823995 intron rut - chrX_8_14820001 chrX_14820001 RAL-142 2533 chrX 14825352 14825374 chrX 14825436 14825449 5 83 5.0 1.5 3.2 1.2 97 chrX 14825352 intron rut - chrX 14825400 intron rut - chrX 14825449 intron rut - chrX_5_14825001 chrX_14825001 RAL-142 2534 chrX 14883565 14883589 chrX 14883676 14883694 4 109 4.0 0.0 2.0 1.3 129 chrX 14883565 intron Flo2 + chrX 14883630 intron Flo2 + chrX 14883694 intron Flo2 + chrX_4_14880001 chrX_14880001 RAL-142 2535 chrX 14900823 14900865 chrX 14901050 14901092 9 225 4.5 3.5 4.0 1.8 269 chrX 14900823 intron Flo2 + chrX 14900958 intron Flo2 + chrX 14901092 intron Flo2 + chrX_9_14900001 chrX_14900001 RAL-142 2536 chrX 14936845 14936887 chrX 14946122 14946179 roo 20 9286 4.5 3.0 3.8 4.2 9334 chrX 14936845 intron pdgy - chrX 14941512 intron pdgy - chrX 14946179 intron pdgy - chrX_20_14940001 chrX_14940001 RAL-142 2537 chrX 14968050 14968098 chrX 14968153 14968212 6 110 0.5 2.0 1.2 2.7 162 chrX 14968050 intron eag + chrX 14968131 intron eag + chrX 14968212 intron eag + chrX_6_14965001 chrX_14965001 RAL-142 2538 chrX 14977429 14977451 chrX 14977535 14977571 5 109 6.5 5.5 6.0 0.7 142 chrX 14977429 intron eag + chrX 14977500 intron eag + chrX 14977571 intron eag + chrX_5_14975001 chrX_14975001 RAL-142 2539 chrX 14981698 14981738 chrX 14981812 14981852 6 111 3.0 3.5 3.2 1.4 154 chrX 14981698 intron eag + chrX 14981775 intron eag + chrX 14981852 intron eag + chrX_6_14980001 chrX_14980001 RAL-142 2540 chrX 15147259 15147278 chrX 15147476 15147483 6 233 2.5 5.0 3.8 1.2 224 chrX 15147259 intron CG9095 - chrX 15147371 intron CG9095 - chrX 15147483 intron CG9095 - chrX_6_15145001 chrX_15145001 RAL-142 2541 chrX 15165987 15166040 chrX 15166109 15166162 8 121 4.5 4.5 4.5 1.5 175 chrX 15165987 intergenic not near genes chrX 15166074 intergenic not near genes chrX 15166162 intergenic not near genes chrX_8_15165001 chrX_15165001 RAL-142 2542 chrX 15273692 15273738 chrX 15274869 15274880 1360 7 1171 7.5 4.0 5.8 1.0 1188 chrX 15273692 intergenic not near genes chrX 15274286 intergenic not near genes chrX 15274880 intergenic not near genes chrX_7_15270001 chrX_15270001 RAL-142 2543 chrX 15277604 15277667 chrX 15277723 15277770 18 114 2.0 4.5 3.2 4.3 166 chrX 15277604 intergenic not near genes chrX 15277687 intergenic not near genes chrX 15277770 intergenic not near genes chrX_18_15275001 chrX_15275001 RAL-142 2544 chrX 15358271 15358338 chrX 15358394 15358460 20 120 3.5 4.0 3.8 4.2 189 chrX 15358271 intron acj6 - chrX 15358366 intron acj6 - chrX 15358460 intron acj6 - chrX_20_15355001 chrX_15355001 RAL-142 2545 chrX 15369798 15369861 chrX 15369915 15369953 14 112 2.0 2.0 2.0 4.7 155 chrX 15369798 intron acj6 - chrX 15369876 intron acj6 - chrX 15369953 intron acj6 - chrX_14_15365001 chrX_15365001 RAL-142 2546 chrX 15413043 15413068 chrX 15417359 15417373 Juan 4 4320 4.0 5.0 4.5 0.7 4330 chrX 15413043 intron Cngl - chrX 15415208 intron Cngl - chrX 15417373 intron Cngl - chrX_4_15415001 chrX_15415001 RAL-142 2547 chrX 15543269 15543295 chrX 15543348 15543365 4 72 1.0 2.0 1.5 1.6 96 chrX 15543269 intron Ac13E - chrX 15543317 intron Ac13E - chrX 15543365 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-142 2548 chrX 15589424 15589455 chrX 15589638 15589654 10 204 10.5 15.5 13.0 0.7 230 chrX 15589424 intron CG9220 - chrX 15589539 intron CG9220 - chrX 15589654 exon CG9220 - chrX_10_15585001 chrX_15585001 RAL-142 2549 chrX 15681376 15681420 chrX 15681486 15681519 10 102 1.5 5.5 3.5 2.2 143 chrX 15681376 intergenic not near genes chrX 15681448 intergenic not near genes chrX 15681519 intergenic not near genes chrX_10_15680001 chrX_15680001 RAL-142 2550 chrX 15749647 15749684 chrX 15749769 15749822 13 135 2.5 7.0 4.8 2.2 175 chrX 15749647 intron CG8239 + chrX 15749734 intron CG8239 + chrX 15749822 intron CG8239 + chrX_13_15745001 chrX_15745001 RAL-142 2551 chrX 15902537 15902564 chrX 15902651 15902673 15 113 3.5 6.5 5.0 2.5 136 chrX 15902537 intron shi + chrX 15902605 intron shi + chrX 15902673 intron shi + chrX_15_15900001 chrX_15900001 RAL-142 2552 chrX 15970881 15970911 chrX 15970994 15971004 5 108 0.0 6.5 3.2 1.2 123 chrX 15970881 intron mmd - chrX 15970942 intron mmd - chrX 15971004 intron mmd - chrX_5_15970001 chrX_15970001 RAL-142 2553 chrX 16100570 16100588 chrX 16100685 16100700 6 114 1.5 2.5 2.0 2.0 130 chrX 16100570 intron,intron CG42353 -,CG42354 - chrX 16100635 intron,intron CG42353 -,CG42354 - chrX 16100700 intron,intron CG42353 -,CG42354 - chrX_6_16100001 chrX_16100001 RAL-142 2554 chrX 16160262 16160301 chrX 16160373 16160412 6 110 2.5 4.5 3.5 1.3 150 chrX 16160262 intergenic not near genes chrX 16160337 intergenic not near genes chrX 16160412 intergenic not near genes chrX_6_16160001 chrX_16160001 RAL-142 2555 chrX 16181541 16181557 chrX 16181653 16181666 7 121 3.5 3.0 3.2 1.7 125 chrX 16181541 intergenic not near genes chrX 16181604 intergenic not near genes chrX 16181666 intergenic not near genes chrX_7_16180001 chrX_16180001 RAL-142 2556 chrX 16340645 16340696 chrX 16349822 16349888 roo 7 9182 0.0 2.5 1.2 3.2 9243 chrX 16340645 intergenic Dsp1 + chrX 16345266 intergenic not near genes chrX 16349888 intergenic sl + chrX_7_16345001 chrX_16345001 RAL-142 2557 chrX 16492615 16492639 chrX 16498227 16498251 mdg3 9 5611 7.5 3.0 5.2 1.5 5636 chrX 16492615 intron para - chrX 16495433 intron para - chrX 16498251 intron para - chrX_9_16495001 chrX_16495001 RAL-142 2558 chrX 16492640 16492676 chrX 16498222 16498250 mdg3 12 5601 4.0 3.0 3.5 2.7 5610 chrX 16492640 intron para - chrX 16495445 intron para - chrX 16498250 intron para - chrX_12_16495001 chrX_16495001 RAL-142 2559 chrX 16570843 16570881 chrX 16570958 16570967 8 106 7.5 0.0 3.8 1.7 124 chrX 16570843 intron CanA-14F - chrX 16570905 intron CanA-14F - chrX 16570967 intron CanA-14F - chrX_8_16570001 chrX_16570001 RAL-142 2560 chrX 16570891 16570904 chrX 16570955 16571019 6 84 3.5 0.0 1.8 2.1 128 chrX 16570891 intron CanA-14F - chrX 16570955 intron CanA-14F - chrX 16571019 intron CanA-14F - chrX_6_16570001 chrX_16570001 RAL-142 2561 chrX 16623467 16623509 chrX 16623571 16623578 4 98 4.0 0.5 2.2 1.2 111 chrX 16623467 intergenic not near genes chrX 16623522 intergenic Rok - chrX 16623578 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-142 2562 chrX 16650910 16650926 chrX 16651009 16651014 5 101 10.0 0.0 5.0 0.8 104 chrX 16650910 intergenic CG32573 +,CG42512 + chrX 16650962 intergenic CG32573 +,CG42512 + chrX 16651014 intergenic CG32573 +,CG42512 + chrX_5_16650001 chrX_16650001 RAL-142 2563 chrX 16689600 16689649 chrX 16689710 16689723 6 98 2.5 1.0 1.8 2.1 123 chrX 16689600 intron Sep4 - chrX 16689662 intron Sep4 - chrX 16689723 intron Sep4 - chrX_6_16685001 chrX_16685001 RAL-142 2564 chrX 16707962 16707977 chrX 16708131 16708136 6 167 0.0 2.5 1.2 2.7 174 chrX 16707962 intron CG4678 + chrX 16708049 intron CG4678 + chrX 16708136 intron CG4678 + chrX_6_16705001 chrX_16705001 RAL-142 2565 chrX 16821204 16821250 chrX 16821319 16821365 11 109 8.0 2.5 5.2 1.8 161 chrX 16821204 intron CG4829 + chrX 16821284 intron CG4829 + chrX 16821365 intron CG4829 + chrX_11_16820001 chrX_16820001 RAL-142 2566 chrX 16870056 16870097 chrX 16870173 16870214 4 116 1.5 3.5 2.5 1.1 158 chrX 16870056 intron CG13003 - chrX 16870135 intron CG13003 - chrX 16870214 intron CG13003 - chrX_4_16870001 chrX_16870001 RAL-142 2567 chrX 16935972 16936022 chrX 16936425 16936438 jockey 6 440 4.0 4.5 4.2 1.2 466 chrX 16935972 intron CG4928 + chrX 16936205 intron CG4928 + chrX 16936438 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-142 2568 chrX 16951348 16951352 chrX 16951403 16951421 5 69 3.5 2.5 3.0 1.2 73 chrX 16951348 exon RhoGAP15B + chrX 16951384 exon RhoGAP15B + chrX 16951421 exon RhoGAP15B + chrX_5_16950001 chrX_16950001 RAL-142 2569 chrX 1053118 1053120 chrX 16983076 16983076 5 15929957 6.5 5.5 6.0 0.7 15929958 chrX 1053118 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_5_9015001 chrX_9015001 RAL-142 2570 chrX 16983076 16983076 chrX 19404963 19404963 4 2421887 5.5 5.0 5.2 0.6 2421887 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404963 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-142 2571 chrX 16983077 16983077 chrX 19404963 19404963 4 2421886 5.5 5.0 5.2 0.6 2421886 chrX 16983077 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404963 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-142 2572 chrX 17011992 17011998 chrX 17012065 17012071 6 88 4.5 6.5 5.5 0.9 79 chrX 17011992 intron CG45002 - chrX 17012032 intron CG45002 - chrX 17012071 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-142 2573 chrX 17088196 17088199 chrX 17088807 17088827 6 623 1.0 12.0 6.5 0.8 631 chrX 17088196 intergenic not near genes chrX 17088512 intergenic not near genes chrX 17088827 intergenic not near genes chrX_6_17085001 chrX_17085001 RAL-142 2574 chrX 17195172 17195229 chrX 17200293 17200350 flea 20 5118 5.0 4.5 4.8 3.4 5178 chrX 17195172 3` UTR baz + chrX 17197761 3` UTR baz + chrX 17200350 3` UTR baz + chrX_20_17195001 chrX_17195001 RAL-142 2575 chrX 17221810 17221858 chrX 17221932 17221978 11 121 3.0 9.0 6.0 1.6 168 chrX 17221810 intron CG5172 + chrX 17221894 intron CG5172 + chrX 17221978 intron CG5172 + chrX_11_17220001 chrX_17220001 RAL-142 2576 chrX 17229928 17229966 chrX 17230064 17230086 13 135 6.5 3.5 5.0 2.2 158 chrX 17229928 intergenic CG10597 - chrX 17230007 intergenic CG10597 - chrX 17230086 intergenic CG10597 - chrX_13_17230001 chrX_17230001 RAL-142 2577 chrX 17282850 17282908 chrX 17282963 17282985 9 91 5.5 0.5 3.0 2.2 135 chrX 17282850 intron CG5445 + chrX 17282918 5` UTR CG5445 + chrX 17282985 intron CG5445 + chrX_9_17280001 chrX_17280001 RAL-142 2578 chrX 17290043 17290092 chrX 17290154 17290203 8 110 2.5 5.0 3.8 1.7 160 chrX 17290043 intron,intron CG5445 +,Fim - chrX 17290123 intron,intron CG5445 +,Fim - chrX 17290203 intron,intron CG5445 +,Fim - chrX_8_17290001 chrX_17290001 RAL-142 2579 chrX 17502317 17502365 chrX 17502432 17502480 8 113 5.0 3.5 4.2 1.5 163 chrX 17502317 intron CG43658 - chrX 17502398 intron CG43658 - chrX 17502480 intron CG43658 - chrX_8_17500001 chrX_17500001 RAL-142 2580 chrX 17544976 17544995 chrX 17545093 17545111 7 115 7.5 5.5 6.5 0.9 135 chrX 17544976 intron CG43658 - chrX 17545044 intron CG43658 - chrX 17545111 intron CG43658 - chrX_7_17545001 chrX_17545001 RAL-142 2581 chrX 17544997 17545016 chrX 17545090 17545133 5 112 5.5 5.5 5.5 0.8 136 chrX 17544997 intron CG43658 - chrX 17545065 intron CG43658 - chrX 17545133 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-142 2582 chrX 17545020 17545032 chrX 17545084 17545149 7 106 4.0 5.5 4.8 1.2 129 chrX 17545020 intron CG43658 - chrX 17545084 intron CG43658 - chrX 17545149 intron CG43658 - chrX_7_17545001 chrX_17545001 RAL-142 2583 chrX 17708807 17708856 chrX 17708908 17708970 6 110 5.0 4.5 4.8 1.0 163 chrX 17708807 intron CG8173 - chrX 17708888 intron CG8173 - chrX 17708970 intron CG8173 - chrX_6_17705001 chrX_17705001 RAL-142 2584 chrX 17792956 17792978 chrX 17796262 17796291 flea 5 3323 2.0 2.5 2.2 1.6 3335 chrX 17792956 intron OdsH + chrX 17794624 intron OdsH + chrX 17796291 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-142 2585 chrX 17994880 17994901 chrX 17994974 17995000 4 94 5.0 5.5 5.2 0.6 120 chrX 17994880 intron Sh - chrX 17994940 intron Sh - chrX 17995000 intron Sh - chrX_4_17990001 chrX_17990001 RAL-142 2586 chrX 18003426 18003436 chrX 18003543 18003551 4 116 14.5 1.5 8.0 0.4 125 chrX 18003426 intron Sh - chrX 18003488 intron Sh - chrX 18003551 intron Sh - chrX_4_18000001 chrX_18000001 RAL-142 2587 chrX 18003444 18003483 chrX 18003536 18003568 17 102 4.5 1.5 3.0 4.2 124 chrX 18003444 intron Sh - chrX 18003506 intron Sh - chrX 18003568 intron Sh - chrX_17_18000001 chrX_18000001 RAL-142 2588 chrX 18029156 18029188 chrX 18029272 18029289 6 109 4.5 0.0 2.2 1.9 133 chrX 18029156 intron Sh - chrX 18029222 intron Sh - chrX 18029289 intron Sh - chrX_6_18025001 chrX_18025001 RAL-142 2589 chrX 18148602 18148617 chrX 18148740 18148755 6 138 4.5 1.0 2.8 1.6 153 chrX 18148602 intergenic not near genes chrX 18148678 intergenic not near genes chrX 18148755 intergenic not near genes chrX_6_18145001 chrX_18145001 RAL-142 2590 chrX 18176993 18177037 chrX 18177120 18177165 9 122 6.0 1.0 3.5 2.0 172 chrX 18176993 intergenic not near genes chrX 18177079 intergenic not near genes chrX 18177165 intergenic Frq2 + chrX_9_18175001 chrX_18175001 RAL-142 2591 chrX 18218004 18218066 chrX 18218155 18218218 7 151 4.0 4.5 4.2 1.3 214 chrX 18218004 intron CG33639 - chrX 18218111 intron CG33639 - chrX 18218218 intron CG33639 - chrX_7_18215001 chrX_18215001 RAL-142 2592 chrX 18320444 18320501 chrX 18320622 18320654 9 170 1.0 3.5 2.2 2.8 210 chrX 18320444 intron CG6023 - chrX 18320549 intron CG6023 - chrX 18320654 intron CG6023 - chrX_9_18320001 chrX_18320001 RAL-142 2593 chrX 18337403 18337455 chrX 18337537 18337572 15 130 4.0 3.5 3.8 3.1 169 chrX 18337403 intron CG6123 - chrX 18337488 intron CG6123 - chrX 18337572 intron CG6123 - chrX_15_18335001 chrX_18335001 RAL-142 2594 chrX 18427366 18427405 chrX 18427795 18427851 14 443 5.0 3.5 4.2 2.7 485 chrX 18427366 intergenic CG42323 + chrX 18427608 intergenic not near genes chrX 18427851 intergenic not near genes chrX_14_18425001 chrX_18425001 RAL-142 2595 chrX 18429478 18429526 chrX 18434806 18434826 Transpac 16 5334 0.0 6.5 3.2 3.8 5348 chrX 18429478 intergenic not near genes chrX 18432152 intergenic not near genes chrX 18434826 intergenic not near genes chrX_16_18430001 chrX_18430001 RAL-142 2596 chrX 18479857 18479870 chrX 18479978 18479978 4 117 1.5 4.0 2.8 1.1 121 chrX 18479857 intergenic Hayan -,CR45714 +,CG32547 - chrX 18479918 intergenic Hayan -,CR45714 +,CG32547 - chrX 18479978 intergenic Hayan -,CR45714 +,CG32547 - chrX_4_18475001 chrX_18475001 RAL-142 2597 chrX 18486102 18486140 chrX 18486196 18486226 8 92 4.5 7.0 5.8 1.2 124 chrX 18486102 exon psh - chrX 18486164 intron psh - chrX 18486226 intron psh - chrX_8_18485001 chrX_18485001 RAL-142 2598 chrX 18513923 18513928 chrX 18514144 18514159 4 228 0.0 21.0 10.5 0.3 236 chrX 18513923 intron CG6470 - chrX 18514041 intron CG6470 - chrX 18514159 intron CG6470 - chrX_4_18510001 chrX_18510001 RAL-142 2599 chrX 18529362 18529399 chrX 18529473 18529509 16 111 5.5 8.5 7.0 2.0 147 chrX 18529362 intron,3` UTR Bx +,CG15047 + chrX 18529436 intron,3` UTR Bx +,CG15047 + chrX 18529509 intron,3` UTR Bx +,CG15047 + chrX_16_18525001 chrX_18525001 RAL-142 2600 chrX 18558750 18558809 chrX 18558867 18558925 14 115 4.5 3.0 3.8 2.9 175 chrX 18558750 intron Bx + chrX 18558838 intron Bx + chrX 18558925 intron Bx + chrX_14_18555001 chrX_18555001 RAL-142 2601 chrX 18645005 18645044 chrX 18645114 18645177 14 128 3.0 4.0 3.5 3.1 172 chrX 18645005 intron Rip11 - chrX 18645091 intron Rip11 - chrX 18645177 intron Rip11 - chrX_14_18645001 chrX_18645001 RAL-142 2602 chrX 18698825 18698877 chrX 18698970 18699025 7 140 4.0 7.0 5.5 1.1 200 chrX 18698825 intergenic not near genes chrX 18698925 intergenic not near genes chrX 18699025 intergenic not near genes chrX_7_18695001 chrX_18695001 RAL-142 2603 chrX 18896483 18896548 chrX 18896629 18896694 9 143 1.5 0.5 1.0 4.5 211 chrX 18896483 3` UTR CG7349 + chrX 18896588 intergenic CG7349 + chrX 18896694 intergenic CG7349 + chrX_9_18895001 chrX_18895001 RAL-142 2604 chrX 18921909 18921962 chrX 18922024 18922044 8 99 3.5 5.0 4.2 1.5 135 chrX 18921909 intergenic not near genes chrX 18921976 intergenic not near genes chrX 18922044 intergenic not near genes chrX_8_18920001 chrX_18920001 RAL-142 2605 chrX 18957054 18957095 chrX 18965730 18965793 roo 5 8689 1.5 1.0 1.2 2.3 8739 chrX 18957054 intron CG43759 + chrX 18961424 intron CG43759 + chrX 18965793 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-142 2606 chrX 19020499 19020516 chrX 19020877 19020880 5 370 3.0 0.0 1.5 2.0 381 chrX 19020499 intron CG43759 + chrX 19020690 intron CG43759 + chrX 19020880 intron CG43759 + chrX_5_19020001 chrX_19020001 RAL-142 2607 chrX 19060381 19060437 chrX 19065199 19065246 Doc 18 4813 2.0 7.0 4.5 3.3 4865 chrX 19060381 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065246 intron CG14190 + chrX_18_19060001 chrX_19060001 RAL-142 2608 chrX 19073664 19073694 chrX 19073778 19073806 6 114 7.0 6.0 6.5 0.8 142 chrX 19073664 intergenic not near genes chrX 19073735 intergenic not near genes chrX 19073806 intergenic not near genes chrX_6_19070001 chrX_19070001 RAL-142 2609 chrX 19098722 19098782 chrX 19098834 19098894 11 109 1.5 3.0 2.2 3.4 172 chrX 19098722 intergenic not near genes chrX 19098808 intergenic not near genes chrX 19098894 intergenic not near genes chrX_11_19095001 chrX_19095001 RAL-142 2610 chrX 19099634 19099687 chrX 19099736 19099805 13 107 3.5 1.0 2.2 4.1 171 chrX 19099634 intergenic not near genes chrX 19099720 intergenic not near genes chrX 19099805 intergenic not near genes chrX_13_19095001 chrX_19095001 RAL-142 2611 chrX 19124431 19124450 chrX 19124527 19124574 4 116 3.5 4.0 3.8 0.8 143 chrX 19124431 intergenic CG15882 - chrX 19124502 intergenic CG15882 -,tgy - chrX 19124574 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-142 2612 chrX 19125653 19125690 chrX 19125765 19125796 8 106 11.0 3.0 7.0 1.0 143 chrX 19125653 intron tgy - chrX 19125724 intron tgy - chrX 19125796 intron tgy - chrX_8_19125001 chrX_19125001 RAL-142 2613 chrX 19131934 19131995 chrX 19132051 19132113 8 106 5.0 4.0 4.5 1.5 179 chrX 19131934 intergenic not near genes chrX 19132024 intergenic not near genes chrX 19132113 intergenic not near genes chrX_8_19130001 chrX_19130001 RAL-142 2614 chrX 19136523 19136581 chrX 19143478 19143480 412 13 6944 4.0 1.5 2.8 3.4 6957 chrX 19136523 intergenic not near genes chrX 19140002 intergenic not near genes chrX 19143480 3` UTR RhoGAP18B - chrX_13_19140001 chrX_19140001 RAL-142 2615 chrX 19182011 19182043 chrX 19182152 19182162 7 138 2.5 4.5 3.5 1.6 151 chrX 19182011 3` UTR CG7453 + chrX 19182086 intergenic CG7453 + chrX 19182162 intergenic CG7453 + chrX_7_19180001 chrX_19180001 RAL-142 2616 chrX 19356972 19357014 chrX 19358448 19358508 NOF 6 1479 0.5 0.0 0.2 5.0 1536 chrX 19356972 intron kek5 + chrX 19357740 intron kek5 + chrX 19358508 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-142 2617 chrX 19380135 19380170 chrX 19380405 19380446 pogo 11 268 7.0 4.5 5.8 1.6 311 chrX 19380135 intron kek5 + chrX 19380290 intron kek5 + chrX 19380446 intron kek5 + chrX_11_19380001 chrX_19380001 RAL-142 2618 chrX 19472104 19472151 chrX 19472690 19472748 jockey 7 587 4.0 8.0 6.0 1.0 644 chrX 19472104 intergenic kek5 + chrX 19472426 intergenic not near genes chrX 19472748 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-142 2619 chrX 19500526 19500536 chrX 19500638 19500648 4 112 14.5 4.0 9.2 0.4 122 chrX 19500526 intron,intron CG14200 +,Pfrx + chrX 19500587 intron,intron CG14200 +,Pfrx + chrX 19500648 intron,intron CG14200 +,Pfrx + chrX_4_19500001 chrX_19500001 RAL-142 2620 chrX 19500538 19500746 chrX 19500634 19500843 36 107 3.5 4.5 4.0 7.2 305 chrX 19500538 intron,intron CG14200 +,Pfrx + chrX 19500690 intron,intron CG14200 +,Pfrx + chrX 19500843 intron,intron CG14200 +,Pfrx + chrX_36_19500001 chrX_19500001 RAL-142 2621 chrX 19541387 19541440 chrX 19541502 19541542 13 111 6.5 2.5 4.5 2.4 155 chrX 19541387 intron CG32532 - chrX 19541464 intron CG32532 - chrX 19541542 intron CG32532 - chrX_13_19540001 chrX_19540001 RAL-142 2622 chrX 19560655 19560668 chrX 19560789 19560801 4 134 7.0 8.5 7.8 0.5 146 chrX 19560655 3` UTR Grip84 - chrX 19560728 3` UTR Grip84 - chrX 19560801 3` UTR Grip84 - chrX_4_19560001 chrX_19560001 RAL-142 2623 chrX 19560670 19560687 chrX 19560786 19560821 5 130 5.0 7.5 6.2 0.7 151 chrX 19560670 3` UTR Grip84 - chrX 19560746 3` UTR Grip84 - chrX 19560821 3` UTR Grip84 - chrX_5_19560001 chrX_19560001 RAL-142 2624 chrX 19662006 19662056 chrX 19662255 19662312 18 248 3.5 6.0 4.8 3.1 306 chrX 19662006 intron CG14223 - chrX 19662159 intron CG14223 - chrX 19662312 intron CG14223 - chrX_18_19660001 chrX_19660001 RAL-142 2625 chrX 19689391 19689437 chrX 19689489 19689529 8 106 7.5 7.0 7.2 1.0 138 chrX 19689391 intergenic Mer -,CG14227 - chrX 19689460 intergenic Mer - chrX 19689529 intergenic Mer - chrX_8_19685001 chrX_19685001 RAL-142 2626 chrX 19710046 19710103 chrX 19711861 19711921 S-element 25 1810 2.0 6.5 4.2 4.8 1875 chrX 19710046 intron meso18E - chrX 19710984 intron meso18E - chrX 19711921 intron meso18E - chrX_25_19710001 chrX_19710001 RAL-142 2627 chrX 19755494 19755508 chrX 19755613 19755628 6 120 12.0 5.5 8.8 0.6 134 chrX 19755494 intron Pmp70 + chrX 19755561 intron Pmp70 + chrX 19755628 intron Pmp70 + chrX_6_19755001 chrX_19755001 RAL-142 2628 chrX 19755511 19755555 chrX 19755612 19755675 16 113 3.5 5.5 4.5 2.9 164 chrX 19755511 intron Pmp70 + chrX 19755593 intron Pmp70 + chrX 19755675 intron Pmp70 + chrX_16_19755001 chrX_19755001 RAL-142 2629 chrX 19881420 19881480 chrX 19881536 19881596 12 110 3.5 2.0 2.8 3.2 176 chrX 19881420 intron Hers + chrX 19881508 intron Hers + chrX 19881596 intron Hers + chrX_12_19880001 chrX_19880001 RAL-142 2630 chrX 19897363 19897383 chrX 19897475 19897488 5 111 8.0 6.5 7.2 0.6 125 chrX 19897363 intron Hers + chrX 19897426 intron Hers + chrX 19897488 intron Hers + chrX_5_19895001 chrX_19895001 RAL-142 2631 chrX 19897398 19897402 chrX 19897465 19897513 6 101 5.0 6.0 5.5 0.9 115 chrX 19897398 intron Hers + chrX 19897456 intron Hers + chrX 19897513 intron Hers + chrX_6_19895001 chrX_19895001 RAL-142 2632 chrX 20041495 20041561 chrX 20041610 20041676 23 111 4.5 1.5 3.0 5.8 181 chrX 20041495 intron Dop2R - chrX 20041586 intron Dop2R - chrX 20041676 intron Dop2R - chrX_23_20040001 chrX_20040001 RAL-142 2633 chrX 20312853 20312908 chrX 20312963 20313021 22 107 3.0 4.5 3.8 4.6 168 chrX 20312853 intron CG1504 - chrX 20312937 intron CG1504 - chrX 20313021 intron CG1504 - chrX_22_20310001 chrX_20310001 RAL-142 2634 chrX 20377326 20377337 chrX 20378808 20378831 hobo 4 1491 4.5 6.0 5.2 0.6 1505 chrX 20377326 intergenic not near genes chrX 20378078 intergenic not near genes chrX 20378831 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-142 2635 chrX 20377343 20377351 chrX 20378780 20378822 hobo 4 1467 3.0 2.0 2.5 1.1 1479 chrX 20377343 intergenic not near genes chrX 20378082 intergenic not near genes chrX 20378822 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-142 2636 chrX 20443163 20443198 chrX 20443269 20443309 8 110 3.0 7.0 5.0 1.3 146 chrX 20443163 exon CG1695 + chrX 20443236 intron CG1695 + chrX 20443309 intron CG1695 + chrX_8_20440001 chrX_20440001 RAL-142 2637 chrX 20467982 20468029 chrX 20468105 20468130 6 118 7.0 0.5 3.8 1.2 148 chrX 20467982 intron GstT3 + chrX 20468056 intron GstT3 + chrX 20468130 intron GstT3 + chrX_6_20465001 chrX_20465001 RAL-142 2638 chrX 20493876 20493928 chrX 20494070 20494093 6 186 0.0 3.5 1.8 2.1 217 chrX 20493876 intron RhoGAP19D - chrX 20493984 intron RhoGAP19D - chrX 20494093 intron RhoGAP19D - chrX_6_20490001 chrX_20490001 RAL-142 2639 chrX 20517211 20517254 chrX 20517332 20517337 10 110 12.0 2.5 7.2 1.2 126 chrX 20517211 intron Tak1 - chrX 20517274 intron Tak1 - chrX 20517337 intron Tak1 - chrX_10_20515001 chrX_20515001 RAL-142 2640 chrX 20531738 20531783 chrX 20531872 20531913 4 132 1.5 2.0 1.8 1.4 175 chrX 20531738 intergenic not near genes chrX 20531826 intergenic not near genes chrX 20531913 intergenic not near genes chrX_4_20530001 chrX_20530001 RAL-142 2641 chrX 20546521 20546561 chrX 20546722 20546746 9 197 2.5 3.5 3.0 2.2 225 chrX 20546521 intron RunxB + chrX 20546634 intron RunxB + chrX 20546746 intron RunxB + chrX_9_20545001 chrX_20545001 RAL-142 2642 chrX 20560219 20560281 chrX 20560354 20560413 13 126 4.0 3.0 3.5 2.9 194 chrX 20560219 intron RunxB + chrX 20560316 intron RunxB + chrX 20560413 intron RunxB + chrX_13_20560001 chrX_20560001 RAL-142 2643 chrX 20570746 20570794 chrX 20570853 20570914 12 115 4.5 7.5 6.0 1.7 168 chrX 20570746 intergenic not near genes chrX 20570830 intergenic not near genes chrX 20570914 intergenic not near genes chrX_12_20570001 chrX_20570001 RAL-142 2644 chrX 20635406 20635443 chrX 20635600 20635642 11 198 0.5 6.0 3.2 2.6 236 chrX 20635406 intergenic not near genes chrX 20635524 intergenic not near genes chrX 20635642 intergenic not near genes chrX_11_20635001 chrX_20635001 RAL-142 2645 chrX 20710415 20710437 chrX 20710527 20710549 7 112 3.0 3.0 3.0 1.8 134 chrX 20710415 intergenic not near genes chrX 20710482 intergenic not near genes chrX 20710549 intergenic not near genes chrX_7_20710001 chrX_20710001 RAL-142 2646 chrX 20915029 20915058 chrX 20915235 20915264 6 204 3.0 2.5 2.8 1.6 235 chrX 20915029 intron shakB - chrX 20915146 intron shakB - chrX 20915264 intron shakB - chrX_6_20915001 chrX_20915001 RAL-142 2647 chrX 20940697 20940731 chrX 20942201 20942234 hobo 9 1501 3.5 4.0 3.8 1.9 1537 chrX 20940697 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942234 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-142 2648 chrX 20956980 20957006 chrX 20962432 20962467 I-element 8 5467 0.0 3.5 1.8 2.9 5487 chrX 20956980 intergenic not near genes chrX 20959724 intergenic not near genes chrX 20962467 intergenic Ser6 - chrX_8_20955001 chrX_20955001 RAL-142 2649 chrX 21022252 21022267 chrX 21022431 21022457 6 195 22.5 9.0 15.8 0.4 205 chrX 21022252 intergenic not near genes chrX 21022354 intergenic not near genes chrX 21022457 intergenic not near genes chrX_6_21020001 chrX_21020001 RAL-142 2650 chrX 21029791 21029807 chrX 21029950 21029981 8 170 1.0 9.0 5.0 1.3 190 chrX 21029791 3` UTR CG1529 - chrX 21029886 3` UTR CG1529 - chrX 21029981 3` UTR CG1529 - chrX_8_21025001 chrX_21025001 RAL-142 2651 chrX 21049718 21049754 chrX 21049832 21049832 4 107 1.0 3.0 2.0 1.3 114 chrX 21049718 intergenic CG1518 - chrX 21049775 intergenic CG1518 - chrX 21049832 intergenic CG1518 - chrX_4_21045001 chrX_21045001 RAL-142 2652 chrX 21076302 21076349 chrX 21076411 21076463 8 106 3.0 0.0 1.5 3.2 161 chrX 21076302 intron bves + chrX 21076382 intron bves + chrX 21076463 intron bves + chrX_8_21075001 chrX_21075001 RAL-142 2653 chrX 21078747 21078782 chrX 21078848 21078865 8 101 2.0 1.0 1.5 3.2 118 chrX 21078747 intron bves + chrX 21078806 intron bves + chrX 21078865 intron bves + chrX_8_21075001 chrX_21075001 RAL-142 2654 chrX 21084531 21084549 chrX 21085066 21085066 5 534 3.0 2.5 2.8 1.3 535 chrX 21084531 intergenic not near genes chrX 21084798 intergenic not near genes chrX 21085066 intergenic not near genes chrX_5_21080001 chrX_21080001 RAL-142 2655 chrX 21086105 21086160 chrX 21087163 21087193 jockey 6 1058 3.0 3.5 3.2 1.4 1088 chrX 21086105 intergenic not near genes chrX 21086649 intergenic not near genes chrX 21087193 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-142 2656 chrX 21268039 21268087 chrX 21268150 21268188 10 108 6.5 5.0 5.8 1.5 149 chrX 21268039 intron CG32521 - chrX 21268114 intron CG32521 - chrX 21268188 intron CG32521 - chrX_10_21265001 chrX_21265001 RAL-142 2657 chrX 21328082 21328146 chrX 21328228 21328272 18 144 3.0 3.0 3.0 4.5 190 chrX 21328082 3` UTR CG1486 + chrX 21328177 intergenic CG1486 +,tty - chrX 21328272 intergenic CG1486 +,tty - chrX_18_21325001 chrX_21325001 RAL-142 2658 chrX 21345085 21345147 chrX 21345200 21345220 13 105 1.0 0.5 0.8 7.2 135 chrX 21345085 3` UTR fliI + chrX 21345152 intergenic fliI +,dod + chrX 21345220 intergenic fliI +,dod + chrX_13_21345001 chrX_21345001 RAL-142 2659 chrX 21410455 21410479 chrX 21410570 21410573 4 110 3.0 0.0 1.5 1.6 118 chrX 21410455 3` UTR CR45003 - chrX 21410514 3` UTR CR45003 - chrX 21410573 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-142 2660 chrX 21428326 21428371 chrX 21428528 21428531 11 196 5.5 0.0 2.8 2.9 205 chrX 21428326 intron CG42343 - chrX 21428428 intron CG42343 - chrX 21428531 intron CG42343 - chrX_11_21425001 chrX_21425001 RAL-142 2661 chrX 21454837 21454871 chrX 21454955 21454989 4 118 2.5 5.0 3.8 0.8 152 chrX 21454837 intron CG42343 - chrX 21454913 intron CG42343 - chrX 21454989 intron CG42343 - chrX_4_21450001 chrX_21450001 RAL-142 2662 chrX 21455190 21455223 chrX 21455403 21455445 5 214 1.0 0.0 0.5 3.3 255 chrX 21455190 intron CG42343 - chrX 21455318 intron CG42343 - chrX 21455445 intron CG42343 - chrX_5_21455001 chrX_21455001 RAL-142 2663 chrX 21458661 21458725 chrX 21464132 21464196 Ivk 14 5467 3.0 8.0 5.5 2.2 5535 chrX 21458661 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464196 intergenic not near genes chrX_14_21460001 chrX_21460001 RAL-142 2664 chrX 21480523 21480571 chrX 21480874 21480920 9 356 3.5 1.0 2.2 2.8 397 chrX 21480523 intergenic CR45510 - chrX 21480722 intergenic CR45510 - chrX 21480920 3` UTR CR45510 - chrX_9_21480001 chrX_21480001 RAL-142 2665 chrX 21500549 21500589 chrX 21500767 21500789 5 219 0.0 4.5 2.2 1.6 240 chrX 21500549 intron CR45082 - chrX 21500669 intron CR45082 - chrX 21500789 intron CR45082 - chrX_5_21500001 chrX_21500001 RAL-142 2666 chrX 21516960 21517007 chrX 21517064 21517100 4 104 10.0 7.5 8.8 0.4 140 chrX 21516960 intron CR45082 - chrX 21517030 intron CR45082 - chrX 21517100 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-142 2667 chrX 21575526 21575557 chrX 21575624 21575671 6 110 3.5 1.5 2.5 1.7 145 chrX 21575526 intergenic not near genes chrX 21575598 intergenic not near genes chrX 21575671 intergenic not near genes chrX_6_21575001 chrX_21575001 RAL-142 2668 chrX 21668236 21668286 chrX 21668344 21668406 10 113 5.0 2.0 3.5 2.2 170 chrX 21668236 intergenic not near genes chrX 21668321 intergenic not near genes chrX 21668406 intergenic not near genes chrX_10_21665001 chrX_21665001 RAL-142 2669 chrX 22448234 22448295 chrX 22448408 22448452 10 168 3.0 6.5 4.8 1.7 218 chrX 22448234 intron CG14615 - chrX 22448343 intron CG14615 - chrX 22448452 intron CG14615 - chrX_10_22445001 chrX_22445001 RAL-142 2670 chrX 22478836 22478881 chrX 22479004 22479049 14 164 4.5 1.5 3.0 3.5 213 chrX 22478836 intron CG12576 - chrX 22478942 intron CG12576 - chrX 22479049 intron CG12576 - chrX_14_22475001 chrX_22475001 RAL-142 2671 chrX 22519282 22519325 chrX 22519446 22519495 12 167 1.5 4.5 3.0 3.0 213 chrX 22519282 intron CG17600 + chrX 22519388 intron CG17600 + chrX 22519495 intron CG17600 + chrX_12_22515001 chrX_22515001 RAL-142 2672 chrX 22677275 22677325 chrX 22677519 22677542 8 225 1.5 2.5 2.0 2.7 267 chrX 22677275 intron CR44997 + chrX 22677408 intron CR44997 + chrX 22677542 intron CR44997 + chrX_8_22675001 chrX_22675001 RAL-142 2673 chrX 22681473 22681480 chrX 22688944 22688967 HMS-Beagle2 5 7482 9.0 4.0 6.5 0.7 7494 chrX 22681473 intron CR44997 + chrX 22685220 intron CR44997 + chrX 22688967 intron CR44997 + chrX_5_22685001 chrX_22685001 RAL-142 2674 chrX 22697471 22697495 chrX 22701803 22701808 Juan 5 4328 5.5 4.5 5.0 0.8 4337 chrX 22697471 intron CR44997 + chrX 22699640 intron CR44997 + chrX 22701808 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-142 2675 chrX 22697498 22697517 chrX 22701790 22701831 Juan 6 4322 4.0 2.0 3.0 1.5 4333 chrX 22697498 intron CR44997 + chrX 22699664 intron CR44997 + chrX 22701831 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-142 2676 chrX 22784057 22784102 chrX 22784168 22784220 11 116 2.0 4.0 3.0 2.8 163 chrX 22784057 intron CR44997 + chrX 22784138 intron CR44997 + chrX 22784220 intron CR44997 + chrX_11_22780001 chrX_22780001 RAL-142 2677 chrX 22811965 22812003 chrX 22816772 22816810 F-element 13 4805 11.5 5.0 8.2 1.4 4845 chrX 22811965 intergenic CG12446 - chrX 22814388 intergenic not near genes chrX 22816810 intergenic not near genes chrX_13_22810001 chrX_22810001 RAL-142 2678 chrX 22824386 22824440 chrX 22824554 22824590 10 166 2.0 3.0 2.5 2.9 204 chrX 22824386 3` UTR fog - chrX 22824488 3` UTR fog - chrX 22824590 3` UTR fog - chrX_10_22820001 chrX_22820001 RAL-142 2679 chrX 22987084 22987129 chrX 22989762 22989803 Burdock 6 2682 3.5 2.5 3.0 1.5 2719 chrX 22987084 intron,intron stnA -,stnB - chrX 22988444 intron,intron stnA -,stnB - chrX 22989803 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-142 2680 chrX 22992376 22992427 chrX 22992526 22992556 10 152 3.5 1.0 2.2 3.1 180 chrX 22992376 intron,intron stnA -,stnB - chrX 22992466 intron,intron stnA -,stnB - chrX 22992556 intron,intron stnA -,stnB - chrX_10_22990001 chrX_22990001 RAL-142 2681 chrX 22996293 22996339 chrX 23003551 23003586 roo 11 7258 5.5 6.0 5.8 1.6 7293 chrX 22996293 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003586 intron,intron stnA -,stnB - chrX_11_22995001 chrX_22995001 RAL-142 2682 chrY 975805 975825 chrY 975872 975927 7 108 125.5 141.5 133.5 0.1 122 chrY 975805 intergenic not near genes chrY 975866 intergenic not near genes chrY 975927 intergenic not near genes chrY_7_975001 chrY_975001 RAL-142 2683 chrY 1419880 1419912 chrY 1420161 1420190 4 276 1.5 2.0 1.8 1.4 310 chrY 1419880 intergenic not near genes chrY 1420035 intergenic not near genes chrY 1420190 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-142