SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 347871 347910 chr2L 355387 355434 blood 8 7524 3.0 2.5 2.8 2.1 7563 chr2L 347871 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355434 3` UTR Plc21C + chr2L_8_350001 chr2L_350001 RAL-138 2 chr2L 407938 407971 chr2L 408044 408077 5 106 1.5 3.0 2.2 1.6 139 chr2L 407938 3` UTR RpI135 + chr2L 408008 intergenic AP-2alpha -,RpI135 + chr2L 408077 3` UTR AP-2alpha - chr2L_5_405001 chr2L_405001 RAL-138 3 chr2L 467338 467359 chr2L 467462 467483 14 124 20.5 20.0 20.2 0.7 145 chr2L 467338 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467483 intron CG4297 - chr2L_14_465001 chr2L_465001 RAL-138 4 chr2L 666268 666297 chr2L 666369 666398 11 100 4.0 0.0 2.0 3.7 130 chr2L 666268 intron ds - chr2L 666333 intron ds - chr2L 666398 intron ds - chr2L_11_665001 chr2L_665001 RAL-138 5 chr2L 686913 686948 chr2L 695971 695998 roo 5 9060 2.5 3.5 3.0 1.2 9085 chr2L 686913 intron ds - chr2L 691456 intron ds - chr2L 695998 intron ds - chr2L_5_690001 chr2L_690001 RAL-138 6 chr2L 770453 770491 chr2L 772244 772263 Bari1 5 1794 1.5 2.0 1.8 1.8 1810 chr2L 770453 intergenic not near genes chr2L 771358 intergenic not near genes chr2L 772263 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-138 7 chr2L 799289 799314 chr2L 799405 799454 12 136 6.0 4.5 5.2 1.9 165 chr2L 799289 intergenic not near genes chr2L 799372 intergenic CR45259 + chr2L 799454 intergenic CR45259 + chr2L_12_795001 chr2L_795001 RAL-138 8 chr2L 877817 877838 chr2L 877923 877944 10 105 19.0 6.0 12.5 0.7 127 chr2L 877817 3` UTR,exon CG15824 -,ninaA + chr2L 877880 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_10_875001 chr2L_875001 RAL-138 9 chr2L 877857 877876 chr2L 877963 877966 4 102 6.0 14.5 10.2 0.4 109 chr2L 877857 3` UTR,exon CG15824 -,ninaA + chr2L 877912 3` UTR,intron CG15824 -,ninaA + chr2L 877966 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-138 10 chr2L 892371 892418 chr2L 892512 892558 5 141 4.5 2.5 3.5 1.1 187 chr2L 892371 intergenic not near genes chr2L 892464 intergenic not near genes chr2L 892558 intergenic not near genes chr2L_5_890001 chr2L_890001 RAL-138 11 chr2L 945742 945789 chr2L 945847 945896 8 107 9.0 2.5 5.8 1.2 154 chr2L 945742 intron CG4341 + chr2L 945819 intron CG4341 + chr2L 945896 intron CG4341 + chr2L_8_945001 chr2L_945001 RAL-138 12 chr2L 976858 976888 chr2L 984518 984542 roo 11 7658 6.5 4.0 5.2 1.8 7684 chr2L 976858 intergenic not near genes chr2L 980700 intergenic not near genes chr2L 984542 intergenic not near genes chr2L_11_980001 chr2L_980001 RAL-138 13 chr2L 1042597 1042608 chr2L 1042699 1042710 5 102 6.5 0.0 3.2 1.2 113 chr2L 1042597 intron IA-2 - chr2L 1042654 intron IA-2 - chr2L 1042710 intron IA-2 - chr2L_5_1040001 chr2L_1040001 RAL-138 14 chr2L 1096356 1096374 chr2L 1096460 1096478 6 104 8.0 3.0 5.5 0.9 122 chr2L 1096356 intron CG4629 - chr2L 1096417 intron CG4629 - chr2L 1096478 intron CG4629 - chr2L_6_1095001 chr2L_1095001 RAL-138 15 chr2L 1096405 1096412 chr2L 1096509 1096516 5 103 3.5 9.5 6.5 0.7 111 chr2L 1096405 intron CG4629 - chr2L 1096460 intron CG4629 - chr2L 1096516 intron CG4629 - chr2L_5_1095001 chr2L_1095001 RAL-138 16 chr2L 1156838 1156894 chr2L 1156968 1157001 16 126 7.0 11.5 9.2 1.6 163 chr2L 1156838 intron capt - chr2L 1156920 intron capt - chr2L 1157001 intron capt - chr2L_16_1155001 chr2L_1155001 RAL-138 17 chr2L 1164229 1164282 chr2L 1164340 1164393 24 111 4.0 7.0 5.5 3.7 164 chr2L 1164229 intergenic IntS14 +,CG5080 - chr2L 1164311 intergenic IntS14 +,CG5080 - chr2L 1164393 intergenic IntS14 + chr2L_24_1160001 chr2L_1160001 RAL-138 18 chr2L 1178655 1178708 chr2L 1178764 1178817 13 109 8.0 5.5 6.8 1.7 162 chr2L 1178655 intron CG4896 + chr2L 1178736 intron CG4896 + chr2L 1178817 intron CG4896 + chr2L_13_1175001 chr2L_1175001 RAL-138 19 chr2L 1199860 1199866 chr2L 1199993 1199999 4 133 2.5 19.0 10.8 0.3 139 chr2L 1199860 3` UTR CG43348 + chr2L 1199930 intergenic CG43348 +,CG43349 + chr2L 1199999 intergenic CG43348 +,CG43349 + chr2L_4_1195001 chr2L_1195001 RAL-138 20 chr2L 1213210 1213243 chr2L 1214617 1214650 6 1406 4.0 2.0 3.0 1.5 1440 chr2L 1213210 intergenic not near genes chr2L 1213930 intergenic not near genes chr2L 1214650 3` UTR CR45346 - chr2L_6_1210001 chr2L_1210001 RAL-138 21 chr2L 1220123 1220145 chr2L 1227613 1227636 blood 8 7491 4.0 4.0 4.0 1.6 7513 chr2L 1220123 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227636 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-138 22 chr2L 1436601 1436650 chr2L 1436712 1436760 7 106 1.0 3.5 2.2 2.2 159 chr2L 1436601 intergenic not near genes chr2L 1436680 intergenic not near genes chr2L 1436760 intergenic not near genes chr2L_7_1435001 chr2L_1435001 RAL-138 23 chr2L 1458221 1458260 chr2L 1458323 1458361 23 98 7.5 13.0 10.2 2.1 140 chr2L 1458221 intergenic not near genes chr2L 1458291 intergenic not near genes chr2L 1458361 intergenic not near genes chr2L_23_1455001 chr2L_1455001 RAL-138 24 chr2L 1567475 1567517 chr2L 1567904 1567916 5 423 2.0 2.0 2.0 1.7 441 chr2L 1567475 intron haf + chr2L 1567696 intron haf + chr2L 1567916 intron haf + chr2L_5_1565001 chr2L_1565001 RAL-138 25 chr2L 1570667 1570712 chr2L 1573564 1573609 F-element 8 2897 2.0 1.5 1.8 2.9 2942 chr2L 1570667 intron haf + chr2L 1572138 intron haf + chr2L 1573609 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-138 26 chr2L 1590952 1590984 chr2L 1591053 1591085 7 101 3.5 3.0 3.2 1.7 133 chr2L 1590952 intron haf + chr2L 1591018 intron haf + chr2L 1591085 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-138 27 chr2L 1622803 1622831 chr2L 1622898 1622923 5 92 4.5 2.0 3.2 1.2 120 chr2L 1622803 3` UTR CR44603 - chr2L 1622863 3` UTR CR44603 - chr2L 1622923 3` UTR CR44603 - chr2L_5_1620001 chr2L_1620001 RAL-138 28 chr2L 1711335 1711363 chr2L 1711684 1711706 mdg3 19 348 24.5 16.0 20.2 0.9 371 chr2L 1711335 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711520 3` UTR frtz - chr2L 1711706 3` UTR frtz - chr2L_19_1710001 chr2L_1710001 RAL-138 29 chr2L 1711364 1711386 chr2L 1711681 1711730 mdg3 19 339 14.5 15.0 14.8 1.2 366 chr2L 1711364 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711547 3` UTR frtz - chr2L 1711730 3` UTR frtz - chr2L_19_1710001 chr2L_1710001 RAL-138 30 chr2L 1716093 1716114 chr2L 1716205 1716228 8 113 5.0 12.5 8.8 0.8 135 chr2L 1716093 intergenic Rim2 -,frtz - chr2L 1716160 intergenic Rim2 -,frtz - chr2L 1716228 intergenic Rim2 -,frtz - chr2L_8_1715001 chr2L_1715001 RAL-138 31 chr2L 1778712 1778716 chr2L 1778905 1778909 4 192 9.5 2.5 6.0 0.6 197 chr2L 1778712 intergenic not near genes chr2L 1778810 intergenic not near genes chr2L 1778909 intergenic not near genes chr2L_4_1775001 chr2L_1775001 RAL-138 32 chr2L 1785651 1785702 chr2L 1785767 1785818 13 113 4.0 3.5 3.8 2.7 167 chr2L 1785651 intergenic Gr22e + chr2L 1785734 intergenic Gr22e + chr2L 1785818 intergenic not near genes chr2L_13_1785001 chr2L_1785001 RAL-138 33 chr2L 1828516 1828532 chr2L 1828652 1828667 5 136 5.0 1.5 3.2 1.2 151 chr2L 1828516 intergenic not near genes chr2L 1828592 intergenic not near genes chr2L 1828667 intergenic not near genes chr2L_5_1825001 chr2L_1825001 RAL-138 34 chr2L 1996888 1996915 chr2L 1996993 1997022 9 107 0.0 8.0 4.0 1.8 134 chr2L 1996888 intergenic CG33543 - chr2L 1996955 intergenic CG33543 - chr2L 1997022 intergenic CG33543 - chr2L_9_1995001 chr2L_1995001 RAL-138 35 chr2L 1999569 1999582 chr2L 1999722 1999735 5 169 5.0 4.5 4.8 0.9 166 chr2L 1999569 intron CG33543 - chr2L 1999652 intron CG33543 - chr2L 1999735 intron CG33543 - chr2L_5_1995001 chr2L_1995001 RAL-138 36 chr2L 2007840 2007872 chr2L 2007973 2008005 16 133 4.5 11.5 8.0 1.8 165 chr2L 2007840 intergenic CR45712 + chr2L 2007922 intergenic CR45712 +,Nplp4 + chr2L 2008005 intergenic CR45712 +,Nplp4 + chr2L_16_2005001 chr2L_2005001 RAL-138 37 chr2L 2061636 2061654 chr2L 2061737 2061755 11 101 5.0 7.0 6.0 1.6 119 chr2L 2061636 intron dpr3 - chr2L 2061696 intron dpr3 - chr2L 2061755 intron dpr3 - chr2L_11_2060001 chr2L_2060001 RAL-138 38 chr2L 2073954 2073999 chr2L 2074056 2074069 14 101 4.5 9.0 6.8 1.8 115 chr2L 2073954 intron dpr3 - chr2L 2074012 intron dpr3 - chr2L 2074069 intron dpr3 - chr2L_14_2070001 chr2L_2070001 RAL-138 39 chr2L 2074000 2074000 chr2L 2074053 2074104 4 82 4.5 7.5 6.0 0.6 104 chr2L 2074000 intron dpr3 - chr2L 2074052 intron dpr3 - chr2L 2074104 intron dpr3 - chr2L_4_2070001 chr2L_2070001 RAL-138 40 chr2L 2100383 2100401 chr2L 2109559 2109569 roo 6 9174 5.0 8.5 6.8 0.8 9186 chr2L 2100383 intron dpr3 - chr2L 2104976 intron dpr3 - chr2L 2109569 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-138 41 chr2L 2100403 2100406 chr2L 2109543 2109579 roo 4 9149 5.0 6.0 5.5 0.6 9176 chr2L 2100403 intron dpr3 - chr2L 2104991 intron dpr3 - chr2L 2109579 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-138 42 chr2L 2110581 2110632 chr2L 2110720 2110771 4 139 0.0 1.5 0.8 2.2 190 chr2L 2110581 intergenic not near genes chr2L 2110676 intergenic not near genes chr2L 2110771 intergenic not near genes chr2L_4_2110001 chr2L_2110001 RAL-138 43 chr2L 2119862 2119913 chr2L 2119976 2119995 6 107 0.0 2.5 1.2 2.7 133 chr2L 2119862 intergenic not near genes chr2L 2119928 intergenic not near genes chr2L 2119995 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-138 44 chr2L 2236172 2236203 chr2L 2236276 2236307 7 103 11.5 13.0 12.2 0.5 135 chr2L 2236172 intron Sec24CD - chr2L 2236240 intron Sec24CD - chr2L 2236307 exon Sec24CD - chr2L_7_2235001 chr2L_2235001 RAL-138 45 chr2L 2236205 2236231 chr2L 2236275 2236313 19 88 5.5 13.0 9.2 1.9 108 chr2L 2236205 intron Sec24CD - chr2L 2236259 intron Sec24CD - chr2L 2236313 exon Sec24CD - chr2L_19_2235001 chr2L_2235001 RAL-138 46 chr2L 2256450 2256472 chr2L 2256555 2256577 7 105 2.0 3.5 2.8 1.8 127 chr2L 2256450 intergenic not near genes chr2L 2256514 intergenic not near genes chr2L 2256577 intergenic not near genes chr2L_7_2255001 chr2L_2255001 RAL-138 47 chr2L 2260779 2260820 chr2L 2260890 2260931 5 111 4.0 1.0 2.5 1.4 152 chr2L 2260779 intergenic not near genes chr2L 2260855 intergenic not near genes chr2L 2260931 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-138 48 chr2L 2294042 2294075 chr2L 2299249 2299257 copia 5 5205 2.5 4.0 3.2 1.2 5215 chr2L 2294042 intergenic not near genes chr2L 2296650 intergenic not near genes chr2L 2299257 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-138 49 chr2L 2311042 2311090 chr2L 2311169 2311211 5 113 0.0 7.0 3.5 1.1 169 chr2L 2311042 intron CG9967 - chr2L 2311126 intron CG9967 - chr2L 2311211 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-138 50 chr2L 2330000 2330009 chr2L 2330131 2330140 4 131 5.0 2.5 3.8 0.8 140 chr2L 2330000 intron,intron CG9967 -,eys + chr2L 2330070 intron,intron CG9967 -,eys + chr2L 2330140 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-138 51 chr2L 2330020 2330029 chr2L 2330134 2330160 4 127 4.0 3.0 3.5 0.9 140 chr2L 2330020 intron,intron CG9967 -,eys + chr2L 2330090 intron,intron CG9967 -,eys + chr2L 2330160 intron,intron CG9967 -,eys + chr2L_4_2330001 chr2L_2330001 RAL-138 52 chr2L 2332857 2332910 chr2L 2333220 2333230 7 351 1.5 1.5 1.5 2.8 373 chr2L 2332857 intron,intron CG9967 -,eys + chr2L 2333044 intron,intron CG9967 -,eys + chr2L 2333230 intron,intron CG9967 -,eys + chr2L_7_2330001 chr2L_2330001 RAL-138 53 chr2L 2372341 2372402 chr2L 2372452 2372504 22 110 0.0 6.0 3.0 5.5 163 chr2L 2372341 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372504 3` UTR CG3609 - chr2L_22_2370001 chr2L_2370001 RAL-138 54 chr2L 2398928 2398938 chr2L 2399013 2399041 4 95 0.0 6.0 3.0 1.0 113 chr2L 2398928 intron VGlut + chr2L 2398984 intron VGlut + chr2L 2399041 intron VGlut + chr2L_4_2395001 chr2L_2395001 RAL-138 55 chr2L 2398941 2398955 chr2L 2399010 2399058 7 94 0.0 4.5 2.2 2.2 117 chr2L 2398941 intron VGlut + chr2L 2399000 intron VGlut + chr2L 2399058 intron VGlut + chr2L_7_2395001 chr2L_2395001 RAL-138 56 chr2L 2453270 2453323 chr2L 2453387 2453440 21 113 7.0 8.0 7.5 2.5 170 chr2L 2453270 intron dpp + chr2L 2453355 intron dpp + chr2L 2453440 intron dpp + chr2L_21_2450001 chr2L_2450001 RAL-138 57 chr2L 2466371 2466417 chr2L 2466489 2466532 7 117 4.5 0.0 2.2 2.2 161 chr2L 2466371 intergenic not near genes chr2L 2466452 intergenic not near genes chr2L 2466532 intergenic not near genes chr2L_7_2465001 chr2L_2465001 RAL-138 58 chr2L 2503453 2503499 chr2L 2503632 2503678 5 179 1.5 2.5 2.0 1.7 225 chr2L 2503453 intergenic not near genes chr2L 2503566 intergenic not near genes chr2L 2503678 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-138 59 chr2L 2504206 2504219 chr2L 2504309 2504322 5 103 2.0 3.0 2.5 1.4 116 chr2L 2504206 intergenic not near genes chr2L 2504264 intergenic not near genes chr2L 2504322 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-138 60 chr2L 2565530 2565563 chr2L 2571628 2571661 297 12 6098 3.0 13.5 8.2 1.3 6131 chr2L 2565530 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571661 exon Cyp309a2 - chr2L_12_2565001 chr2L_2565001 RAL-138 61 chr2L 2584587 2584618 chr2L 2586909 2586940 7 2324 39.5 29.0 34.2 0.2 2353 chr2L 2584587 intron Drp1 - chr2L 2585764 intergenic Drp1 - chr2L 2586940 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-138 62 chr2L 2661171 2661226 chr2L 2663031 2663033 I-element 4 1840 1.5 0.5 1.0 2.0 1862 chr2L 2661171 intergenic not near genes chr2L 2662102 intergenic not near genes chr2L 2663033 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-138 63 chr2L 2698858 2698894 chr2L 2698955 2698973 9 102 0.0 4.0 2.0 3.0 115 chr2L 2698858 intron CG31690 + chr2L 2698916 intron CG31690 + chr2L 2698973 intron CG31690 + chr2L_9_2695001 chr2L_2695001 RAL-138 64 chr2L 2701953 2702015 chr2L 2702066 2702085 9 101 2.0 4.0 3.0 2.2 132 chr2L 2701953 intron CG31690 + chr2L 2702019 intron CG31690 + chr2L 2702085 intron CG31690 + chr2L_9_2700001 chr2L_2700001 RAL-138 65 chr2L 2703420 2703441 chr2L 2703529 2703544 5 108 2.5 10.0 6.2 0.7 124 chr2L 2703420 intron CG31690 + chr2L 2703482 intron CG31690 + chr2L 2703544 intron CG31690 + chr2L_5_2700001 chr2L_2700001 RAL-138 66 chr2L 2713492 2713513 chr2L 2713616 2713632 7 121 15.0 8.0 11.5 0.6 140 chr2L 2713492 intron CG31690 + chr2L 2713562 intron CG31690 + chr2L 2713632 intron CG31690 + chr2L_7_2710001 chr2L_2710001 RAL-138 67 chr2L 2713514 2713516 chr2L 2713614 2713629 4 115 15.0 7.5 11.2 0.3 115 chr2L 2713514 intron CG31690 + chr2L 2713572 intron CG31690 + chr2L 2713629 intron CG31690 + chr2L_4_2710001 chr2L_2710001 RAL-138 68 chr2L 2713522 2713542 chr2L 2713612 2713638 10 116 7.0 6.5 6.8 1.3 116 chr2L 2713522 intron CG31690 + chr2L 2713580 intron CG31690 + chr2L 2713638 intron CG31690 + chr2L_10_2710001 chr2L_2710001 RAL-138 69 chr2L 2772591 2772618 chr2L 2779198 2779200 297 11 6605 5.5 6.5 6.0 1.6 6609 chr2L 2772591 3` UTR Syt1 - chr2L 2775896 intron Syt1 - chr2L 2779200 3` UTR Syt1 - chr2L_11_2775001 chr2L_2775001 RAL-138 70 chr2L 2782921 2782932 chr2L 2783023 2783034 6 102 11.0 10.0 10.5 0.5 113 chr2L 2782921 intron Syt1 - chr2L 2782978 intron Syt1 - chr2L 2783034 intron Syt1 - chr2L_6_2780001 chr2L_2780001 RAL-138 71 chr2L 2800587 2800599 chr2L 2800695 2800707 13 107 10.0 0.0 5.0 2.2 120 chr2L 2800587 intergenic not near genes chr2L 2800647 intergenic not near genes chr2L 2800707 intergenic not near genes chr2L_13_2800001 chr2L_2800001 RAL-138 72 chr2L 2826515 2826568 chr2L 2826631 2826678 6 110 0.5 4.5 2.5 1.7 163 chr2L 2826515 intron Duox - chr2L 2826596 intron Duox - chr2L 2826678 intron Duox - chr2L_6_2825001 chr2L_2825001 RAL-138 73 chr2L 2830391 2830411 chr2L 2830546 2830566 4 155 4.5 2.5 3.5 0.9 175 chr2L 2830391 intergenic Duox - chr2L 2830478 intergenic Duox - chr2L 2830566 intergenic Duox - chr2L_4_2830001 chr2L_2830001 RAL-138 74 chr2L 2857795 2857830 chr2L 2857896 2857931 8 101 6.5 1.5 4.0 1.6 136 chr2L 2857795 intron CG2991 + chr2L 2857863 intron CG2991 + chr2L 2857931 intron CG2991 + chr2L_8_2855001 chr2L_2855001 RAL-138 75 chr2L 2873232 2873239 chr2L 2873604 2873622 5 380 13.5 9.5 11.5 0.4 390 chr2L 2873232 intron CG31694 - chr2L 2873427 intron CG31694 - chr2L 2873622 intron CG31694 - chr2L_5_2870001 chr2L_2870001 RAL-138 76 chr2L 2873247 2873263 chr2L 2873628 2873646 7 381 7.5 14.5 11.0 0.6 399 chr2L 2873247 intron CG31694 - chr2L 2873446 intron CG31694 - chr2L 2873646 exon CG31694 - chr2L_7_2870001 chr2L_2870001 RAL-138 77 chr2L 2873264 2873273 chr2L 2873620 2873656 5 376 3.5 11.5 7.5 0.6 392 chr2L 2873264 intron CG31694 - chr2L 2873460 intron CG31694 - chr2L 2873656 exon CG31694 - chr2L_5_2870001 chr2L_2870001 RAL-138 78 chr2L 2937398 2937423 chr2L 2937500 2937525 6 102 4.5 3.5 4.0 1.2 127 chr2L 2937398 intron lilli + chr2L 2937462 intron lilli + chr2L 2937525 intron lilli + chr2L_6_2935001 chr2L_2935001 RAL-138 79 chr2L 3008881 3008939 chr2L 3009015 3009064 18 132 3.0 3.5 3.2 4.3 183 chr2L 3008881 intron CG17265 + chr2L 3008972 intron CG17265 + chr2L 3009064 intron CG17265 + chr2L_18_3005001 chr2L_3005001 RAL-138 80 chr2L 3073010 3073055 chr2L 3078238 3078283 copia 16 5228 6.0 5.5 5.8 2.4 5273 chr2L 3073010 intron toc - chr2L 3075646 intron toc - chr2L 3078283 intron toc - chr2L_16_3075001 chr2L_3075001 RAL-138 81 chr2L 3108845 3108889 chr2L 3108947 3108991 9 101 2.0 3.0 2.5 2.6 146 chr2L 3108845 exon toc - chr2L 3108918 intron toc - chr2L 3108991 intron toc - chr2L_9_3105001 chr2L_3105001 RAL-138 82 chr2L 3147253 3147272 chr2L 3147355 3147374 6 99 7.5 6.5 7.0 0.8 121 chr2L 3147253 3` UTR Mad - chr2L 3147314 3` UTR Mad - chr2L 3147374 3` UTR Mad - chr2L_6_3145001 chr2L_3145001 RAL-138 83 chr2L 3147277 3147304 chr2L 3147379 3147406 6 101 4.0 7.5 5.8 0.9 129 chr2L 3147277 3` UTR Mad - chr2L 3147342 3` UTR Mad - chr2L 3147406 3` UTR Mad - chr2L_6_3145001 chr2L_3145001 RAL-138 84 chr2L 3152502 3152511 chr2L 3152613 3152617 5 109 4.5 16.5 10.5 0.4 115 chr2L 3152502 intron Mad - chr2L 3152560 intron Mad - chr2L 3152617 intron Mad - chr2L_5_3150001 chr2L_3150001 RAL-138 85 chr2L 3152512 3152523 chr2L 3152594 3152615 4 90 1.0 13.0 7.0 0.5 103 chr2L 3152512 intron Mad - chr2L 3152564 intron Mad - chr2L 3152615 intron Mad - chr2L_4_3150001 chr2L_3150001 RAL-138 86 chr2L 3192183 3192233 chr2L 3192318 3192369 33 133 13.0 8.5 10.8 2.8 186 chr2L 3192183 exon CG34393 - chr2L 3192276 intron CG34393 - chr2L 3192369 intron CG34393 - chr2L_33_3190001 chr2L_3190001 RAL-138 87 chr2L 3193809 3193853 chr2L 3193917 3193963 24 111 13.5 5.5 9.5 2.3 154 chr2L 3193809 intron CG34393 - chr2L 3193886 intron CG34393 - chr2L 3193963 intron CG34393 - chr2L_24_3190001 chr2L_3190001 RAL-138 88 chr2L 3233175 3233199 chr2L 3237221 3237245 6 4044 3.5 1.0 2.2 1.9 4070 chr2L 3233175 intergenic not near genes chr2L 3235210 intergenic not near genes chr2L 3237245 intergenic not near genes chr2L_6_3235001 chr2L_3235001 RAL-138 89 chr2L 3251476 3251514 chr2L 3259066 3259104 springer 8 7590 1.5 6.0 3.8 1.7 7628 chr2L 3251476 intergenic not near genes chr2L 3255290 intergenic not near genes chr2L 3259104 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-138 90 chr2L 3291211 3291242 chr2L 3291316 3291347 5 105 2.5 0.5 1.5 2.0 136 chr2L 3291211 intergenic CG9664 - chr2L 3291279 3` UTR CG9664 - chr2L 3291347 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-138 91 chr2L 3323231 3323265 chr2L 3323363 3323397 13 129 18.0 6.5 12.2 1.0 166 chr2L 3323231 intergenic CG8837 + chr2L 3323314 intergenic CG8837 + chr2L 3323397 intergenic CG8837 + chr2L_13_3320001 chr2L_3320001 RAL-138 92 chr2L 3323267 3323273 chr2L 3323399 3323405 5 132 16.0 19.0 17.5 0.3 138 chr2L 3323267 intergenic CG8837 + chr2L 3323336 intergenic CG8837 + chr2L 3323405 intergenic CG8837 + chr2L_5_3320001 chr2L_3320001 RAL-138 93 chr2L 3323275 3323284 chr2L 3323371 3323399 13 125 10.5 9.0 9.8 1.2 124 chr2L 3323275 intergenic CG8837 + chr2L 3323337 intergenic CG8837 + chr2L 3323399 intergenic CG8837 + chr2L_13_3320001 chr2L_3320001 RAL-138 94 chr2L 3375788 3375827 chr2L 3375873 3375898 17 102 2.5 3.5 3.0 4.2 110 chr2L 3375788 intergenic CG9662 -,CG15412 - chr2L 3375843 3` UTR CG9662 - chr2L 3375898 3` UTR CG9662 - chr2L_17_3375001 chr2L_3375001 RAL-138 95 chr2L 3386240 3386267 chr2L 3386373 3386400 5 129 1.0 5.5 3.2 1.2 160 chr2L 3386240 intergenic not near genes chr2L 3386320 intergenic not near genes chr2L 3386400 intergenic CR45301 - chr2L_5_3385001 chr2L_3385001 RAL-138 96 chr2L 3448136 3448195 chr2L 3448295 3448354 22 158 6.5 3.0 4.8 3.8 218 chr2L 3448136 intergenic not near genes chr2L 3448245 intergenic not near genes chr2L 3448354 intergenic not near genes chr2L_22_3445001 chr2L_3445001 RAL-138 97 chr2L 3508356 3508374 chr2L 3508459 3508477 15 103 0.0 14.0 7.0 1.9 121 chr2L 3508356 intergenic tim -,CR45299 + chr2L 3508416 intergenic CR45299 +,tim - chr2L 3508477 intergenic CR45299 +,tim - chr2L_15_3505001 chr2L_3505001 RAL-138 98 chr2L 3526527 3526536 chr2L 3526584 3526628 4 84 3.0 4.5 3.8 0.8 101 chr2L 3526527 exon CG8852 + chr2L 3526578 exon CG8852 + chr2L 3526628 exon CG8852 + chr2L_4_3525001 chr2L_3525001 RAL-138 99 chr2L 3575402 3575428 chr2L 3575539 3575566 14 136 11.5 8.5 10.0 1.3 164 chr2L 3575402 5` UTR CR43822 + chr2L 3575484 5` UTR CR43822 + chr2L 3575566 5` UTR CR43822 + chr2L_14_3575001 chr2L_3575001 RAL-138 100 chr2L 3575439 3575454 chr2L 3575547 3575592 9 131 7.5 11.5 9.5 0.9 153 chr2L 3575439 5` UTR CR43822 + chr2L 3575516 5` UTR CR43822 + chr2L 3575592 5` UTR CR43822 + chr2L_9_3575001 chr2L_3575001 RAL-138 101 chr2L 3634084 3634115 chr2L 3634191 3634221 9 107 5.0 2.5 3.8 1.9 137 chr2L 3634084 intron for - chr2L 3634152 intron for - chr2L 3634221 intron for - chr2L_9_3630001 chr2L_3630001 RAL-138 102 chr2L 3649775 3649812 chr2L 3655002 3655040 copia 5 5228 1.5 0.5 1.0 2.5 5265 chr2L 3649775 intron for - chr2L 3652408 intron for - chr2L 3655040 intron for - chr2L_5_3650001 chr2L_3650001 RAL-138 103 chr2L 3663309 3663341 chr2L 3663412 3663445 9 104 1.0 3.0 2.0 3.0 136 chr2L 3663309 intron CG34340 + chr2L 3663377 intron CG34340 + chr2L 3663445 intron CG34340 + chr2L_9_3660001 chr2L_3660001 RAL-138 104 chr2L 3692227 3692283 chr2L 3695055 3695111 15 2826 29.5 14.5 22.0 0.7 2884 chr2L 3692227 exon CG16704 - chr2L 3693669 exon Acp24A4 - chr2L 3695111 exon CG16713 - chr2L_15_3690001 chr2L_3690001 RAL-138 105 chr2L 3691410 3691458 chr2L 3695329 3695381 15 3924 42.5 22.5 32.5 0.4 3971 chr2L 3691410 exon CG34340 + chr2L 3693396 3` UTR Acp24A4 - chr2L 3695381 5` UTR CG16713 - chr2L_15_3690001 chr2L_3690001 RAL-138 106 chr2L 3717449 3717465 chr2L 3717552 3717568 10 103 5.0 8.0 6.5 1.3 119 chr2L 3717449 exon lectin-24A - chr2L 3717508 exon lectin-24A - chr2L 3717568 exon lectin-24A - chr2L_10_3715001 chr2L_3715001 RAL-138 107 chr2L 3831812 3831861 chr2L 3831918 3831967 11 106 2.0 2.5 2.2 3.4 155 chr2L 3831812 intergenic not near genes chr2L 3831890 intergenic not near genes chr2L 3831967 intergenic not near genes chr2L_11_3830001 chr2L_3830001 RAL-138 108 chr2L 3891869 3891917 chr2L 3891979 3892027 13 109 5.0 8.5 6.8 1.7 158 chr2L 3891869 intron capu - chr2L 3891948 intron capu - chr2L 3892027 intron capu - chr2L_13_3890001 chr2L_3890001 RAL-138 109 chr2L 3898269 3898307 chr2L 3898357 3898409 5 95 0.0 3.0 1.5 2.0 140 chr2L 3898269 intron capu - chr2L 3898339 intron capu - chr2L 3898409 intron capu - chr2L_5_3895001 chr2L_3895001 RAL-138 110 chr2L 3943774 3943820 chr2L 3943889 3943936 7 116 1.5 2.5 2.0 2.3 162 chr2L 3943774 intron fred - chr2L 3943855 intron fred - chr2L 3943936 intron fred - chr2L_7_3940001 chr2L_3940001 RAL-138 111 chr2L 4014631 4014681 chr2L 4014799 4014849 9 168 1.5 3.5 2.5 2.6 218 chr2L 4014631 intergenic not near genes chr2L 4014740 intergenic not near genes chr2L 4014849 intergenic not near genes chr2L_9_4010001 chr2L_4010001 RAL-138 112 chr2L 4048041 4048097 chr2L 4048274 4048330 10 230 4.5 1.0 2.8 2.6 289 chr2L 4048041 intron ed + chr2L 4048186 intron ed + chr2L 4048330 intron ed + chr2L_10_4045001 chr2L_4045001 RAL-138 113 chr2L 4072321 4072338 chr2L 4072436 4072453 5 115 0.0 1.5 0.8 2.8 132 chr2L 4072321 intron ed + chr2L 4072387 intron ed + chr2L 4072453 intron ed + chr2L_5_4070001 chr2L_4070001 RAL-138 114 chr2L 4277696 4277746 chr2L 4277809 4277859 12 112 5.5 7.0 6.2 1.7 163 chr2L 4277696 3` UTR Art2 - chr2L 4277778 3` UTR Art2 - chr2L 4277859 3` UTR Art2 - chr2L_12_4275001 chr2L_4275001 RAL-138 115 chr2L 4345470 4345507 chr2L 4345572 4345610 5 99 2.5 0.0 1.2 2.3 140 chr2L 4345470 3` UTR Atet + chr2L 4345540 3` UTR Atet + chr2L 4345610 3` UTR Atet + chr2L_5_4345001 chr2L_4345001 RAL-138 116 chr2L 4351448 4351501 chr2L 4351549 4351602 5 101 3.5 4.0 3.8 1.0 154 chr2L 4351448 5` UTR CR44700 + chr2L 4351525 intergenic CR44700 + chr2L 4351602 intergenic CR44700 + chr2L_5_4350001 chr2L_4350001 RAL-138 117 chr2L 4422679 4422685 chr2L 4423559 4423564 4 880 15.5 6.0 10.8 0.3 885 chr2L 4422679 intron CG15431 - chr2L 4423122 intron CG15431 - chr2L 4423564 intron CG15431 - chr2L_4_4420001 chr2L_4420001 RAL-138 118 chr2L 4437188 4437224 chr2L 4437293 4437323 7 104 4.5 2.5 3.5 1.6 135 chr2L 4437188 intron CG15431 - chr2L 4437256 intron CG15431 - chr2L 4437323 intron CG15431 - chr2L_7_4435001 chr2L_4435001 RAL-138 119 chr2L 4562864 4562874 chr2L 4562981 4562991 7 117 14.5 0.0 7.2 0.9 127 chr2L 4562864 intron dp - chr2L 4562928 intron dp - chr2L 4562991 intron dp - chr2L_7_4560001 chr2L_4560001 RAL-138 120 chr2L 4601693 4601724 chr2L 4609159 4609190 mdg1 5 7466 2.5 2.0 2.2 1.6 7497 chr2L 4601693 intron dp - chr2L 4605442 intron dp - chr2L 4609190 intron dp - chr2L_5_4605001 chr2L_4605001 RAL-138 121 chr2L 4661824 4661852 chr2L 4669429 4669457 opus 7 7605 2.0 3.0 2.5 2.0 7633 chr2L 4661824 intergenic not near genes chr2L 4665640 intergenic not near genes chr2L 4669457 intergenic not near genes chr2L_7_4665001 chr2L_4665001 RAL-138 122 chr2L 4710320 4710372 chr2L 4710428 4710480 12 107 3.5 4.0 3.8 2.5 160 chr2L 4710320 intron CG34351 + chr2L 4710400 intron CG34351 + chr2L 4710480 intron CG34351 + chr2L_12_4710001 chr2L_4710001 RAL-138 123 chr2L 4740081 4740108 chr2L 4740173 4740176 6 91 1.5 1.5 1.5 2.4 95 chr2L 4740081 intron CG15630 - chr2L 4740128 intron CG15630 - chr2L 4740176 intron CG15630 - chr2L_6_4740001 chr2L_4740001 RAL-138 124 chr2L 4819471 4819519 chr2L 4819619 4819667 11 148 3.5 3.0 3.2 2.6 196 chr2L 4819471 intergenic not near genes chr2L 4819569 intergenic not near genes chr2L 4819667 intergenic not near genes chr2L_11_4815001 chr2L_4815001 RAL-138 125 chr2L 4862261 4862303 chr2L 4862359 4862402 17 98 7.5 8.5 8.0 1.9 141 chr2L 4862261 intron pog + chr2L 4862332 intron pog + chr2L 4862402 intron pog + chr2L_17_4860001 chr2L_4860001 RAL-138 126 chr2L 4918153 4918183 chr2L 4923251 4923281 jockey 6 5098 3.5 4.0 3.8 1.2 5128 chr2L 4918153 intron hoe1 - chr2L 4920717 intron hoe1 - chr2L 4923281 intron hoe1 - chr2L_6_4920001 chr2L_4920001 RAL-138 127 chr2L 4925653 4925694 chr2L 4925757 4925798 4 104 5.0 3.0 4.0 0.8 145 chr2L 4925653 intron hoe1 - chr2L 4925726 intron hoe1 - chr2L 4925798 intron hoe1 - chr2L_4_4925001 chr2L_4925001 RAL-138 128 chr2L 5061949 5062003 chr2L 5062056 5062110 14 107 4.5 7.0 5.8 2.1 161 chr2L 5061949 intron qtc + chr2L 5062030 intron qtc + chr2L 5062110 intron qtc + chr2L_14_5060001 chr2L_5060001 RAL-138 129 chr2L 5070719 5070772 chr2L 5070821 5070875 10 103 6.5 0.5 3.5 2.2 156 chr2L 5070719 3` UTR qtc + chr2L 5070797 intergenic qtc +,CR45305 -,RpL37A + chr2L 5070875 intergenic CR45305 -,RpL37A +,qtc + chr2L_10_5070001 chr2L_5070001 RAL-138 130 chr2L 5090558 5090603 chr2L 5090915 5090960 8 357 2.5 1.0 1.8 2.9 402 chr2L 5090558 intron pgant5 - chr2L 5090759 intron pgant5 - chr2L 5090960 intron pgant5 - chr2L_8_5090001 chr2L_5090001 RAL-138 131 chr2L 5120955 5120999 chr2L 5121074 5121114 14 117 6.5 0.5 3.5 3.1 159 chr2L 5120955 intron Msp300 + chr2L 5121034 intron Msp300 + chr2L 5121114 intron Msp300 + chr2L_14_5120001 chr2L_5120001 RAL-138 132 chr2L 5242936 5242937 chr2L 16217660 16217660 19 10974724 20.5 12.0 16.2 1.1 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_19_10730001 chr2L_10730001 RAL-138 133 chr2L 5248773 5248825 chr2L 5248932 5248983 16 154 2.0 5.0 3.5 3.6 210 chr2L 5248773 intron tkv - chr2L 5248878 intron tkv - chr2L 5248983 intron tkv - chr2L_16_5245001 chr2L_5245001 RAL-138 134 chr2L 5262503 5262545 chr2L 5262604 5262620 8 95 4.0 2.5 3.2 1.9 117 chr2L 5262503 intron tkv - chr2L 5262562 intron tkv - chr2L 5262620 intron tkv - chr2L_8_5260001 chr2L_5260001 RAL-138 135 chr2L 5342750 5342798 chr2L 5345154 5345203 Doc 14 2405 4.5 6.5 5.5 2.2 2453 chr2L 5342750 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345203 intergenic not near genes chr2L_14_5340001 chr2L_5340001 RAL-138 136 chr2L 5403232 5403234 chr2L 10238736 10238738 4 4835504 0.0 3.0 1.5 1.6 4835506 chr2L 5403232 intergenic not near genes chr2L 7820985 intergenic CR45008 -,CG7115 +,LanB1 + chr2L 10238738 intergenic mthl15 - chr2L_4_7820001 chr2L_7820001 RAL-138 137 chr2L 5500825 5500839 chr2L 5500931 5500945 4 106 3.5 0.5 2.0 1.3 120 chr2L 5500825 intergenic not near genes chr2L 5500885 intergenic not near genes chr2L 5500945 intergenic not near genes chr2L_4_5500001 chr2L_5500001 RAL-138 138 chr2L 5516637 5516663 chr2L 5516741 5516767 5 104 5.0 1.0 3.0 1.2 130 chr2L 5516637 intergenic not near genes chr2L 5516702 intergenic not near genes chr2L 5516767 intergenic not near genes chr2L_5_5515001 chr2L_5515001 RAL-138 139 chr2L 5573662 5573704 chr2L 5573763 5573805 10 101 1.0 1.5 1.2 4.5 143 chr2L 5573662 intergenic not near genes chr2L 5573734 intergenic not near genes chr2L 5573805 intergenic not near genes chr2L_10_5570001 chr2L_5570001 RAL-138 140 chr2L 5620236 5620248 chr2L 5620338 5620350 7 102 8.5 7.5 8.0 0.8 114 chr2L 5620236 3` UTR CR44796 - chr2L 5620293 intergenic CR44796 -,Cyp6a16 - chr2L 5620350 intergenic CR44796 -,Cyp6a16 - chr2L_7_5620001 chr2L_5620001 RAL-138 141 chr2L 5634152 5634209 chr2L 5634267 5634284 10 109 2.0 3.0 2.5 2.9 132 chr2L 5634152 intron CG31646 - chr2L 5634218 intron CG31646 - chr2L 5634284 intron CG31646 - chr2L_10_5630001 chr2L_5630001 RAL-138 142 chr2L 5745767 5745820 chr2L 5745874 5745882 33 92 6.5 5.5 6.0 4.7 115 chr2L 5745767 intron CG11030 + chr2L 5745824 intron CG11030 + chr2L 5745882 intron CG11030 + chr2L_33_5745001 chr2L_5745001 RAL-138 143 chr2L 5805194 5805254 chr2L 5805338 5805397 36 140 0.0 4.5 2.2 11.2 203 chr2L 5805194 intergenic CG11034 + chr2L 5805296 intergenic CG11034 + chr2L 5805397 5` UTR CG11034 + chr2L_36_5805001 chr2L_5805001 RAL-138 144 chr2L 5825070 5825090 chr2L 5825189 5825209 8 118 6.0 4.0 5.0 1.3 139 chr2L 5825070 5` UTR TrissinR + chr2L 5825140 5` UTR TrissinR + chr2L 5825209 5` UTR TrissinR + chr2L_8_5825001 chr2L_5825001 RAL-138 145 chr2L 5827692 5827735 chr2L 5836725 5836768 roo 11 9029 7.5 3.5 5.5 1.7 9076 chr2L 5827692 intron TrissinR + chr2L 5832230 intron TrissinR + chr2L 5836768 intron TrissinR + chr2L_11_5830001 chr2L_5830001 RAL-138 146 chr2L 5897571 5897623 chr2L 5897679 5897694 21 99 3.5 1.5 2.5 6.0 123 chr2L 5897571 intergenic not near genes chr2L 5897632 intergenic not near genes chr2L 5897694 intergenic not near genes chr2L_21_5895001 chr2L_5895001 RAL-138 147 chr2L 5926279 5926353 chr2L 5926451 5926533 5 175 0.0 0.0 0.0 5.0 254 chr2L 5926279 intron dsf + chr2L 5926406 intron dsf + chr2L 5926533 intron dsf + chr2L_5_5925001 chr2L_5925001 RAL-138 148 chr2L 5942006 5942009 chr2L 5942121 5942126 4 116 19.0 8.5 13.8 0.3 120 chr2L 5942006 5` UTR CR45289 + chr2L 5942066 5` UTR CR45289 + chr2L 5942126 5` UTR CR45289 + chr2L_4_5940001 chr2L_5940001 RAL-138 149 chr2L 5942010 5942052 chr2L 5942117 5942169 18 107 7.0 7.5 7.2 2.2 159 chr2L 5942010 5` UTR CR45289 + chr2L 5942090 5` UTR CR45289 + chr2L 5942169 5` UTR CR45289 + chr2L_18_5940001 chr2L_5940001 RAL-138 150 chr2L 6007070 6007111 chr2L 6007171 6007193 6 97 7.0 2.0 4.5 1.1 123 chr2L 6007070 intergenic Gal -,CG9098 - chr2L 6007132 intergenic CG9098 -,Gal - chr2L 6007193 intergenic CG9098 -,Gal - chr2L_6_6005001 chr2L_6005001 RAL-138 151 chr2L 6021507 6021548 chr2L 6021702 6021715 5 180 12.5 0.0 6.2 0.7 208 chr2L 6021507 exon CG13996 + chr2L 6021611 exon CG13996 + chr2L 6021715 3` UTR CG13996 + chr2L_5_6020001 chr2L_6020001 RAL-138 152 chr2L 6022053 6022066 chr2L 6022163 6022176 4 110 19.5 13.0 16.2 0.2 123 chr2L 6022053 intergenic CG13996 + chr2L 6022114 intergenic CG13996 + chr2L 6022176 intergenic CG13996 + chr2L_4_6020001 chr2L_6020001 RAL-138 153 chr2L 6022067 6022105 chr2L 6022161 6022215 29 104 9.5 12.5 11.0 2.4 148 chr2L 6022067 intergenic CG13996 + chr2L 6022141 intergenic CG13996 + chr2L 6022215 intergenic CG13996 + chr2L_29_6020001 chr2L_6020001 RAL-138 154 chr2L 6050416 6050468 chr2L 6050545 6050597 31 129 12.0 9.0 10.5 2.7 181 chr2L 6050416 3` UTR CG12393 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050597 intergenic CG12393 +,CG9135 + chr2L_31_6050001 chr2L_6050001 RAL-138 155 chr2L 6242952 6242981 chr2L 6243075 6243104 8 122 0.5 1.5 1.0 4.0 152 chr2L 6242952 intergenic not near genes chr2L 6243028 intergenic not near genes chr2L 6243104 intergenic not near genes chr2L_8_6240001 chr2L_6240001 RAL-138 156 chr2L 6253597 6253630 chr2L 6253698 6253731 5 101 2.5 2.0 2.2 1.6 134 chr2L 6253597 intron Ddr + chr2L 6253664 intron Ddr + chr2L 6253731 intron Ddr + chr2L_5_6250001 chr2L_6250001 RAL-138 157 chr2L 6279615 6279654 chr2L 6279719 6279758 INE-1 8 104 7.0 1.0 4.0 1.6 143 chr2L 6279615 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279758 intron Ddr + chr2L_8_6275001 chr2L_6275001 RAL-138 158 chr2L 6283919 6283976 chr2L 6284055 6284112 13 136 2.5 4.5 3.5 2.9 193 chr2L 6283919 intron Ddr + chr2L 6284016 intron Ddr + chr2L 6284112 intron Ddr + chr2L_13_6280001 chr2L_6280001 RAL-138 159 chr2L 6315282 6315335 chr2L 6315416 6315469 9 134 1.5 2.5 2.0 3.0 187 chr2L 6315282 intron Ddr + chr2L 6315376 intron Ddr + chr2L 6315469 intron Ddr + chr2L_9_6315001 chr2L_6315001 RAL-138 160 chr2L 6316348 6316354 chr2L 9800201 9800222 4 3483864 11.0 8.0 9.5 0.4 3483874 chr2L 6316348 intron Ddr + chr2L 8058285 intron poe - chr2L 9800222 intron nAChRalpha6 - chr2L_4_8055001 chr2L_8055001 RAL-138 161 chr2L 6349052 6349074 chr2L 6349155 6349177 11 103 4.0 2.0 3.0 2.8 125 chr2L 6349052 intergenic CG9498 - chr2L 6349114 intergenic CG9498 - chr2L 6349177 intergenic CG9498 - chr2L_11_6345001 chr2L_6345001 RAL-138 162 chr2L 6363125 6363174 chr2L 6366076 6366125 Burdock 9 2950 5.0 4.0 4.5 1.6 3000 chr2L 6363125 intergenic not near genes chr2L 6364625 intergenic not near genes chr2L 6366125 intergenic not near genes chr2L_9_6360001 chr2L_6360001 RAL-138 163 chr2L 6426833 6426887 chr2L 6445118 6445172 roo 23 18284 3.0 3.0 3.0 5.8 18339 chr2L 6426833 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445172 exon CG9527 - chr2L_23_6435001 chr2L_6435001 RAL-138 164 chr2L 6463551 6463560 chr2L 6463646 6463663 7 101 57.0 9.5 33.2 0.2 112 chr2L 6463551 exon CG16947 - chr2L 6463607 exon CG16947 - chr2L 6463663 exon CG16947 - chr2L_7_6460001 chr2L_6460001 RAL-138 165 chr2L 6463562 6463583 chr2L 6463645 6463676 19 86 38.0 9.0 23.5 0.8 114 chr2L 6463562 exon CG16947 - chr2L 6463619 exon CG16947 - chr2L 6463676 exon CG16947 - chr2L_19_6460001 chr2L_6460001 RAL-138 166 chr2L 6483571 6483576 chr2L 6483671 6483681 8 93 16.5 18.0 17.2 0.4 110 chr2L 6483571 exon DLP + chr2L 6483626 exon DLP + chr2L 6483681 exon DLP + chr2L_8_6480001 chr2L_6480001 RAL-138 167 chr2L 6514134 6514156 chr2L 6514209 6514246 5 91 1.5 5.0 3.2 1.2 112 chr2L 6514134 intron CG31637 + chr2L 6514190 intron CG31637 + chr2L 6514246 intron CG31637 + chr2L_5_6510001 chr2L_6510001 RAL-138 168 chr2L 6515825 6515829 chr2L 11730866 11730871 4 5215042 16.5 12.0 14.2 0.3 5215046 chr2L 6515825 intron CG31637 + chr2L 9123348 intergenic not near genes chr2L 11730871 intergenic not near genes chr2L_4_9120001 chr2L_9120001 RAL-138 169 chr2L 6537121 6537165 chr2L 6537224 6537268 9 103 3.0 5.5 4.2 1.7 147 chr2L 6537121 intron eya - chr2L 6537194 intron eya - chr2L 6537268 intron eya - chr2L_9_6535001 chr2L_6535001 RAL-138 170 chr2L 6544363 6544393 chr2L 6544472 6544510 4 113 0.0 4.0 2.0 1.3 147 chr2L 6544363 intron eya - chr2L 6544436 intron eya - chr2L 6544510 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-138 171 chr2L 6564819 6564882 chr2L 6564936 6564999 11 117 1.0 2.5 1.8 3.9 180 chr2L 6564819 3` UTR CG13766 - chr2L 6564909 3` UTR CG13766 - chr2L 6564999 3` UTR CG13766 - chr2L_11_6560001 chr2L_6560001 RAL-138 172 chr2L 6626865 6626914 chr2L 6626975 6627024 16 108 3.0 3.5 3.2 3.8 159 chr2L 6626865 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6627024 intron Oatp26F - chr2L_16_6625001 chr2L_6625001 RAL-138 173 chr2L 6772002 6772022 chr2L 6772074 6772107 7 89 9.0 9.5 9.2 0.7 105 chr2L 6772002 intron CG11321 - chr2L 6772054 intron CG11321 - chr2L 6772107 intron CG11321 - chr2L_7_6770001 chr2L_6770001 RAL-138 174 chr2L 6772568 6772595 chr2L 6772676 6772678 7 102 9.0 13.0 11.0 0.6 110 chr2L 6772568 5` UTR CG11321 - chr2L 6772623 5` UTR CG11321 - chr2L 6772678 5` UTR CG11321 - chr2L_7_6770001 chr2L_6770001 RAL-138 175 chr2L 6818104 6818142 chr2L 6818218 6818240 5 110 1.0 6.0 3.5 1.1 136 chr2L 6818104 intergenic not near genes chr2L 6818172 intergenic not near genes chr2L 6818240 intergenic not near genes chr2L_5_6815001 chr2L_6815001 RAL-138 176 chr2L 6850359 6850407 chr2L 6850467 6850515 16 107 7.0 6.0 6.5 2.1 156 chr2L 6850359 intergenic not near genes chr2L 6850437 intergenic not near genes chr2L 6850515 intergenic not near genes chr2L_16_6850001 chr2L_6850001 RAL-138 177 chr2L 6969253 6969308 chr2L 6969358 6969411 31 101 5.5 16.5 11.0 2.6 158 chr2L 6969253 3` UTR snRNP-U1-70K - chr2L 6969332 3` UTR snRNP-U1-70K - chr2L 6969411 3` UTR snRNP-U1-70K - chr2L_31_6965001 chr2L_6965001 RAL-138 178 chr2L 7089986 7090009 chr2L 7090086 7090111 5 101 4.0 3.0 3.5 1.1 125 chr2L 7089986 intergenic not near genes chr2L 7090048 intergenic not near genes chr2L 7090111 intergenic not near genes chr2L_5_7090001 chr2L_7090001 RAL-138 179 chr2L 7100984 7101016 chr2L 7101235 7101253 4 247 3.5 5.5 4.5 0.7 269 chr2L 7100984 intron Pvf3 - chr2L 7101118 intron Pvf3 - chr2L 7101253 intron Pvf3 - chr2L_4_7100001 chr2L_7100001 RAL-138 180 chr2L 7111734 7111752 chr2L 7111844 7111861 4 107 3.5 0.5 2.0 1.3 127 chr2L 7111734 intron Pvf3 - chr2L 7111798 intron Pvf3 - chr2L 7111861 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-138 181 chr2L 7126747 7126874 chr2L 7126852 7126978 5 104 0.0 0.0 0.0 5.0 231 chr2L 7126747 intron Pvf3 - chr2L 7126862 intron Pvf3 - chr2L 7126978 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-138 182 chr2L 7140811 7140870 chr2L 7140918 7140962 9 99 4.0 4.5 4.2 1.7 151 chr2L 7140811 intron Pvf3 - chr2L 7140886 intron Pvf3 - chr2L 7140962 intron Pvf3 - chr2L_9_7140001 chr2L_7140001 RAL-138 183 chr2L 7343305 7343351 chr2L 7350442 7350490 roo 26 7136 6.5 7.0 6.8 3.3 7185 chr2L 7343305 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350490 intron Wnt6 + chr2L_26_7345001 chr2L_7345001 RAL-138 184 chr2L 7377890 7377901 chr2L 7378011 7378023 4 122 0.5 10.0 5.2 0.6 133 chr2L 7377890 intron ninaC + chr2L 7377956 intron ninaC + chr2L 7378023 intron ninaC + chr2L_4_7375001 chr2L_7375001 RAL-138 185 chr2L 7489679 7489712 chr2L 7489793 7489826 4 108 2.5 3.0 2.8 1.1 147 chr2L 7489679 intron Ziz - chr2L 7489752 intron Ziz - chr2L 7489826 intron Ziz - chr2L_4_7485001 chr2L_7485001 RAL-138 186 chr2L 7512866 7512908 chr2L 7512982 7513028 7 120 1.5 2.5 2.0 2.3 162 chr2L 7512866 intron RapGAP1 - chr2L 7512947 intron RapGAP1 - chr2L 7513028 intron RapGAP1 - chr2L_7_7510001 chr2L_7510001 RAL-138 187 chr2L 7579869 7579910 chr2L 7579976 7580017 9 107 4.5 4.5 4.5 1.6 148 chr2L 7579869 intergenic not near genes chr2L 7579943 intergenic not near genes chr2L 7580017 intergenic not near genes chr2L_9_7575001 chr2L_7575001 RAL-138 188 chr2L 7629159 7629172 chr2L 7629262 7629284 4 109 2.0 2.5 2.2 1.2 125 chr2L 7629159 intergenic not near genes chr2L 7629222 intergenic not near genes chr2L 7629284 intergenic not near genes chr2L_4_7625001 chr2L_7625001 RAL-138 189 chr2L 7640407 7640417 chr2L 7640518 7640528 7 111 0.0 1.5 0.8 3.9 121 chr2L 7640407 intergenic not near genes chr2L 7640468 intergenic not near genes chr2L 7640528 intergenic not near genes chr2L_7_7640001 chr2L_7640001 RAL-138 190 chr2L 7650474 7650503 chr2L 7650585 7650617 5 113 6.5 5.5 6.0 0.7 143 chr2L 7650474 intron Slob - chr2L 7650546 intron Slob - chr2L 7650617 intron Slob - chr2L_5_7650001 chr2L_7650001 RAL-138 191 chr2L 7861284 7861340 chr2L 7861413 7861469 33 127 8.5 7.0 7.8 3.7 185 chr2L 7861284 intergenic TwdlE - chr2L 7861376 intergenic not near genes chr2L 7861469 intergenic not near genes chr2L_33_7860001 chr2L_7860001 RAL-138 192 chr2L 7959023 7959028 chr2L 7960459 7960464 pogo 4 1436 8.0 4.0 6.0 0.6 1441 chr2L 7959023 intron Snoo - chr2L 7959744 intron Snoo - chr2L 7960464 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-138 193 chr2L 7959040 7959071 chr2L 7960461 7960507 pogo 8 1434 3.0 4.0 3.5 1.8 1467 chr2L 7959040 intron Snoo - chr2L 7959774 intron Snoo - chr2L 7960507 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-138 194 chr2L 7977089 7977110 chr2L 7984063 7984110 297 7 6995 6.0 6.0 6.0 1.0 7021 chr2L 7977089 intron Snoo - chr2L 7980600 intron Snoo - chr2L 7984110 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-138 195 chr2L 7997012 7997064 chr2L 7997137 7997189 16 125 1.5 3.0 2.2 5.0 177 chr2L 7997012 intron CG7227 - chr2L 7997100 intron CG7227 - chr2L 7997189 intron CG7227 - chr2L_16_7995001 chr2L_7995001 RAL-138 196 chr2L 7999739 7999773 chr2L 7999841 7999875 18 99 7.5 11.5 9.5 1.7 136 chr2L 7999739 intron Wwox - chr2L 7999807 3` UTR Wwox - chr2L 7999875 exon Wwox - chr2L_18_7995001 chr2L_7995001 RAL-138 197 chr2L 8013595 8013601 chr2L 8018824 8018830 copia 5 5229 4.0 0.0 2.0 1.7 5235 chr2L 8013595 intron Tg + chr2L 8016212 intron Tg + chr2L 8018830 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-138 198 chr2L 8044070 8044121 chr2L 8044174 8044223 38 102 8.0 11.0 9.5 3.6 153 chr2L 8044070 exon CG7466 + chr2L 8044146 intron CG7466 + chr2L 8044223 intron CG7466 + chr2L_38_8040001 chr2L_8040001 RAL-138 199 chr2L 8244708 8244749 chr2L 8244854 8244896 12 147 0.5 4.5 2.5 3.4 188 chr2L 8244708 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244896 intron CG8086 - chr2L_12_8240001 chr2L_8240001 RAL-138 200 chr2L 8286272 8286326 chr2L 8286384 8286450 8 119 2.0 0.0 1.0 4.0 178 chr2L 8286272 intron Btk29A - chr2L 8286361 intron Btk29A - chr2L 8286450 intron Btk29A - chr2L_8_8285001 chr2L_8285001 RAL-138 201 chr2L 8452403 8452445 chr2L 8461597 8461638 roo 12 9195 2.5 5.0 3.8 2.5 9235 chr2L 8452403 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461638 intron fu12 - chr2L_12_8455001 chr2L_8455001 RAL-138 202 chr2L 8502642 8502691 chr2L 8502751 8502800 9 109 2.5 2.5 2.5 2.6 158 chr2L 8502642 intron Dh31 - chr2L 8502721 intron Dh31 - chr2L 8502800 intron Dh31 - chr2L_9_8500001 chr2L_8500001 RAL-138 203 chr2L 8538141 8538189 chr2L 8538242 8538300 5 103 3.5 0.5 2.0 1.7 159 chr2L 8538141 intron CG17834 + chr2L 8538220 intron CG17834 + chr2L 8538300 intron CG17834 + chr2L_5_8535001 chr2L_8535001 RAL-138 204 chr2L 8612830 8612869 chr2L 8612932 8612971 14 102 4.0 4.0 4.0 2.8 141 chr2L 8612830 intron Sema-1a + chr2L 8612900 intron Sema-1a + chr2L 8612971 intron Sema-1a + chr2L_14_8610001 chr2L_8610001 RAL-138 205 chr2L 8719182 8719222 chr2L 8719283 8719323 6 101 3.0 2.5 2.8 1.6 141 chr2L 8719182 intron raw - chr2L 8719252 intron raw - chr2L 8719323 intron raw - chr2L_6_8715001 chr2L_8715001 RAL-138 206 chr2L 8723107 8723140 chr2L 8731509 8731542 Tirant 6 8402 0.0 2.0 1.0 3.0 8435 chr2L 8723107 intron raw - chr2L 8727324 intron raw - chr2L 8731542 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-138 207 chr2L 8742741 8742776 chr2L 8742842 8742877 4 101 7.0 0.0 3.5 0.9 136 chr2L 8742741 intergenic not near genes chr2L 8742809 intergenic not near genes chr2L 8742877 intergenic not near genes chr2L_4_8740001 chr2L_8740001 RAL-138 208 chr2L 8789297 8789337 chr2L 8789397 8789424 8 98 4.0 2.0 3.0 2.0 127 chr2L 8789297 intergenic not near genes chr2L 8789360 intergenic not near genes chr2L 8789424 intergenic not near genes chr2L_8_8785001 chr2L_8785001 RAL-138 209 chr2L 8799809 8799831 chr2L 8799922 8799945 8 122 1.5 6.0 3.8 1.7 136 chr2L 8799809 intergenic not near genes chr2L 8799877 intergenic not near genes chr2L 8799945 intergenic not near genes chr2L_8_8795001 chr2L_8795001 RAL-138 210 chr2L 8818037 8818060 chr2L 8818124 8818165 4 100 4.0 6.0 5.0 0.7 128 chr2L 8818037 intergenic not near genes chr2L 8818101 intergenic not near genes chr2L 8818165 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-138 211 chr2L 8818061 8818070 chr2L 8818118 8818175 4 93 2.5 6.0 4.2 0.8 114 chr2L 8818061 intergenic not near genes chr2L 8818118 intergenic not near genes chr2L 8818175 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-138 212 chr2L 8851428 8851484 chr2L 8851737 8851791 5 308 2.5 0.5 1.5 2.0 363 chr2L 8851428 intergenic not near genes chr2L 8851610 intergenic CR45365 - chr2L 8851791 intergenic CR45365 - chr2L_5_8850001 chr2L_8850001 RAL-138 213 chr2L 8910700 8910720 chr2L 8910816 8910836 6 116 5.0 0.5 2.8 1.6 136 chr2L 8910700 intron CG34398 + chr2L 8910768 intron CG34398 + chr2L 8910836 intron CG34398 + chr2L_6_8910001 chr2L_8910001 RAL-138 214 chr2L 8910734 8910744 chr2L 8910848 8910860 4 115 3.0 1.0 2.0 1.3 126 chr2L 8910734 intron CG34398 + chr2L 8910797 intron CG34398 + chr2L 8910860 intron CG34398 + chr2L_4_8910001 chr2L_8910001 RAL-138 215 chr2L 8993877 8993928 chr2L 8994415 8994466 11 536 3.0 1.5 2.2 3.4 589 chr2L 8993877 3` UTR alien - chr2L 8994172 3` UTR alien - chr2L 8994466 3` UTR,exon alien -,CG17906 + chr2L_11_8990001 chr2L_8990001 RAL-138 216 chr2L 9000265 9000307 chr2L 9007800 9007842 roo 13 7535 9.0 0.0 4.5 2.4 7577 chr2L 9000265 intergenic Try29F + chr2L 9004054 intergenic not near genes chr2L 9007842 intergenic not near genes chr2L_13_9000001 chr2L_9000001 RAL-138 217 chr2L 9053394 9053422 chr2L 9053654 9053682 9 259 3.5 0.0 1.8 3.2 288 chr2L 9053394 exon CG31708 - chr2L 9053538 intron CG31708 - chr2L 9053682 intron CG31708 - chr2L_9_9050001 chr2L_9050001 RAL-138 218 chr2L 9084336 9084340 chr2L 16217660 16217660 23 7133321 14.5 12.0 13.2 1.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_23_12650001 chr2L_12650001 RAL-138 219 chr2L 9095554 9095600 chr2L 9095666 9095712 10 109 1.0 4.5 2.8 2.6 158 chr2L 9095554 intergenic not near genes chr2L 9095633 intergenic not near genes chr2L 9095712 intergenic not near genes chr2L_10_9095001 chr2L_9095001 RAL-138 220 chr2L 9217949 9218001 chr2L 9222761 9222812 Doc 5 4811 0.5 2.0 1.2 2.3 4863 chr2L 9217949 intron tai + chr2L 9220380 intron tai + chr2L 9222812 intron tai + chr2L_5_9220001 chr2L_9220001 RAL-138 221 chr2L 9251121 9251177 chr2L 9251243 9251278 29 119 6.5 13.5 10.0 2.6 157 chr2L 9251121 intergenic aust -,borr - chr2L 9251200 intergenic aust -,borr - chr2L 9251278 intergenic borr -,aust - chr2L_29_9250001 chr2L_9250001 RAL-138 222 chr2L 9337885 9337905 chr2L 9337987 9338007 5 102 6.5 2.0 4.2 1.0 122 chr2L 9337885 intron Eaat1 + chr2L 9337946 intron Eaat1 + chr2L 9338007 intron Eaat1 + chr2L_5_9335001 chr2L_9335001 RAL-138 223 chr2L 9379452 9379490 chr2L 9379558 9379596 19 106 7.5 13.0 10.2 1.7 144 chr2L 9379452 intron Shawl - chr2L 9379524 intron Shawl - chr2L 9379596 intron Shawl - chr2L_19_9375001 chr2L_9375001 RAL-138 224 chr2L 9380218 9380254 chr2L 9380338 9380374 32 120 12.0 5.5 8.8 3.3 156 chr2L 9380218 exon Shawl - chr2L 9380296 intron Shawl - chr2L 9380374 intron Shawl - chr2L_32_9380001 chr2L_9380001 RAL-138 225 chr2L 9391651 9391700 chr2L 9391763 9391811 11 108 2.5 6.5 4.5 2.0 160 chr2L 9391651 intron Shawl - chr2L 9391731 intron Shawl - chr2L 9391811 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-138 226 chr2L 9393490 9393512 chr2L 9396469 9396503 jockey 5 2989 4.0 6.0 5.0 0.8 3013 chr2L 9393490 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396503 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-138 227 chr2L 9393514 9393526 chr2L 9396506 9396518 jockey 4 2992 2.5 8.0 5.2 0.6 3004 chr2L 9393514 intron Shawl - chr2L 9395016 intron Shawl - chr2L 9396518 intron Shawl - chr2L_4_9395001 chr2L_9395001 RAL-138 228 chr2L 9396926 9396931 chr2L 9397206 9397234 8 272 9.5 11.5 10.5 0.7 308 chr2L 9396926 intron Shawl - chr2L 9397080 intron,3` UTR Shawl -,CG4438 - chr2L 9397234 intron,exon Shawl -,CG4438 - chr2L_8_9395001 chr2L_9395001 RAL-138 229 chr2L 9441299 9441349 chr2L 9441428 9441478 5 129 2.5 0.0 1.2 2.3 179 chr2L 9441299 intron numb + chr2L 9441388 intron numb + chr2L 9441478 intron numb + chr2L_5_9440001 chr2L_9440001 RAL-138 230 chr2L 9456918 9456941 chr2L 9457024 9457047 7 106 2.0 3.0 2.5 2.0 129 chr2L 9456918 intron numb + chr2L 9456982 intron numb + chr2L 9457047 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-138 231 chr2L 9474763 9474789 chr2L 9474882 9474908 5 119 1.0 2.0 1.5 2.0 145 chr2L 9474763 intergenic not near genes chr2L 9474836 intergenic not near genes chr2L 9474908 intergenic not near genes chr2L_5_9470001 chr2L_9470001 RAL-138 232 chr2L 9490498 9490552 chr2L 9490603 9490657 19 101 1.0 3.5 2.2 5.9 159 chr2L 9490498 intergenic not near genes chr2L 9490578 intergenic not near genes chr2L 9490657 intergenic not near genes chr2L_19_9490001 chr2L_9490001 RAL-138 233 chr2L 9506372 9506388 chr2L 9506485 9506501 4 113 0.5 10.0 5.2 0.6 129 chr2L 9506372 intron CG33298 + chr2L 9506436 intron CG33298 + chr2L 9506501 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-138 234 chr2L 9570389 9570439 chr2L 9570523 9570542 11 127 2.0 4.5 3.2 2.6 153 chr2L 9570389 intron CG3838 + chr2L 9570466 intron CG3838 + chr2L 9570542 intron CG3838 + chr2L_11_9570001 chr2L_9570001 RAL-138 235 chr2L 9578655 9578689 chr2L 9578781 9578814 20 126 5.0 5.0 5.0 3.3 159 chr2L 9578655 3` UTR CG31709 - chr2L 9578734 3` UTR CG31709 - chr2L 9578814 exon CG31709 - chr2L_20_9575001 chr2L_9575001 RAL-138 236 chr2L 9619482 9619520 chr2L 9619843 9619882 4 362 0.5 1.5 1.0 2.0 400 chr2L 9619482 intron GlcAT-S + chr2L 9619682 intron GlcAT-S + chr2L 9619882 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-138 237 chr2L 9704150 9704164 chr2L 9704287 9704301 4 136 3.5 2.0 2.8 1.1 151 chr2L 9704150 intron,intron pelo +,CG31710 - chr2L 9704226 intron,intron pelo +,CG31710 - chr2L 9704301 intron,intron pelo +,CG31710 - chr2L_4_9700001 chr2L_9700001 RAL-138 238 chr2L 9704166 9704191 chr2L 9704285 9704321 5 131 2.5 2.0 2.2 1.6 155 chr2L 9704166 intron,intron pelo +,CG31710 - chr2L 9704244 intron,intron pelo +,CG31710 - chr2L 9704321 intron,intron pelo +,CG31710 - chr2L_5_9700001 chr2L_9700001 RAL-138 239 chr2L 9719751 9719778 chr2L 9719859 9719886 6 108 0.0 2.0 1.0 3.0 135 chr2L 9719751 intron Nckx30C - chr2L 9719818 intron Nckx30C - chr2L 9719886 intron Nckx30C - chr2L_6_9715001 chr2L_9715001 RAL-138 240 chr2L 9828243 9828270 chr2L 9828348 9828375 5 105 3.0 9.5 6.2 0.7 132 chr2L 9828243 intron nAChRalpha6 - chr2L 9828309 intron nAChRalpha6 - chr2L 9828375 intron nAChRalpha6 - chr2L_5_9825001 chr2L_9825001 RAL-138 241 chr2L 9829558 9829579 chr2L 9829778 9829806 5 226 2.5 3.0 2.8 1.3 248 chr2L 9829558 intron nAChRalpha6 - chr2L 9829682 intron nAChRalpha6 - chr2L 9829806 intron nAChRalpha6 - chr2L_5_9825001 chr2L_9825001 RAL-138 242 chr2L 9873110 9873135 chr2L 9873411 9873436 4 301 8.0 4.0 6.0 0.6 326 chr2L 9873110 intron nAChRalpha6 - chr2L 9873273 intron nAChRalpha6 - chr2L 9873436 intron nAChRalpha6 - chr2L_4_9870001 chr2L_9870001 RAL-138 243 chr2L 9873140 9873164 chr2L 9873406 9873463 4 285 3.5 3.0 3.2 1.0 323 chr2L 9873140 intron nAChRalpha6 - chr2L 9873302 intron nAChRalpha6 - chr2L 9873463 intron nAChRalpha6 - chr2L_4_9870001 chr2L_9870001 RAL-138 244 chr2L 9973706 9973753 chr2L 9980849 9980897 HMS-Beagle 12 7143 4.0 3.0 3.5 2.7 7191 chr2L 9973706 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980897 intergenic not near genes chr2L_12_9975001 chr2L_9975001 RAL-138 245 chr2L 9986331 9986353 chr2L 9986450 9986473 4 117 15.5 15.5 15.5 0.2 142 chr2L 9986331 intron bib + chr2L 9986402 intron bib + chr2L 9986473 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-138 246 chr2L 9986356 9986379 chr2L 9986444 9986462 16 105 6.5 12.5 9.5 1.5 106 chr2L 9986356 intron bib + chr2L 9986409 intron bib + chr2L 9986462 intron bib + chr2L_16_9985001 chr2L_9985001 RAL-138 247 chr2L 10045392 10045428 chr2L 10045495 10045514 12 100 4.0 7.5 5.8 1.8 122 chr2L 10045392 intergenic not near genes chr2L 10045453 intergenic not near genes chr2L 10045514 intergenic not near genes chr2L_12_10045001 chr2L_10045001 RAL-138 248 chr2L 10051722 10051749 chr2L 10051816 10051859 11 102 8.5 6.0 7.2 1.3 137 chr2L 10051722 5` UTR CR44874 + chr2L 10051790 5` UTR CR44874 + chr2L 10051859 5` UTR CR44874 + chr2L_11_10050001 chr2L_10050001 RAL-138 249 chr2L 10078103 10078157 chr2L 10078285 10078298 21 179 8.5 12.5 10.5 1.8 195 chr2L 10078103 intron CG44153 - chr2L 10078200 intron CG44153 - chr2L 10078298 intron CG44153 - chr2L_21_10075001 chr2L_10075001 RAL-138 250 chr2L 10083026 10083082 chr2L 10083143 10083199 12 117 5.0 4.5 4.8 2.1 173 chr2L 10083026 intron CG44153 - chr2L 10083112 intron CG44153 - chr2L 10083199 intron CG44153 - chr2L_12_10080001 chr2L_10080001 RAL-138 251 chr2L 10095610 10095660 chr2L 10095715 10095765 11 105 2.0 1.0 1.5 4.4 155 chr2L 10095610 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095765 intron CG44153 - chr2L_11_10095001 chr2L_10095001 RAL-138 252 chr2L 10156300 10156352 chr2L 10163795 10163847 blood 13 7494 5.5 4.0 4.8 2.2 7547 chr2L 10156300 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163847 intron CG44153 - chr2L_13_10160001 chr2L_10160001 RAL-138 253 chr2L 10171153 10171179 chr2L 10171276 10171302 4 123 4.0 2.0 3.0 1.0 149 chr2L 10171153 intron CG44153 - chr2L 10171228 intron CG44153 - chr2L 10171302 intron CG44153 - chr2L_4_10170001 chr2L_10170001 RAL-138 254 chr2L 10176023 10176024 chr2L 16071771 16071771 5 5895747 12.5 10.5 11.5 0.4 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_13120001 chr2L_13120001 RAL-138 255 chr2L 10180962 10180968 chr2L 15416348 15416348 4 5235383 20.5 14.0 17.2 0.2 5235386 chr2L 10180962 intergenic not near genes chr2L 12798655 intergenic not near genes chr2L 15416348 intergenic not near genes chr2L_4_12795001 chr2L_12795001 RAL-138 256 chr2L 10209826 10209842 chr2L 10209928 10209943 7 102 5.5 0.0 2.8 1.8 117 chr2L 10209826 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209884 3` UTR CG5727 - chr2L 10209943 3` UTR CG5727 - chr2L_7_10205001 chr2L_10205001 RAL-138 257 chr2L 10258408 10258431 chr2L 10258518 10258541 8 110 3.0 3.0 3.0 2.0 133 chr2L 10258408 intron Pten - chr2L 10258474 intron Pten - chr2L 10258541 intron Pten - chr2L_8_10255001 chr2L_10255001 RAL-138 258 chr2L 10474361 10474413 chr2L 10474466 10474519 6 102 4.0 3.0 3.5 1.3 158 chr2L 10474361 intergenic RluA-1 - chr2L 10474440 intergenic RluA-1 - chr2L 10474519 intergenic RluA-1 - chr2L_6_10470001 chr2L_10470001 RAL-138 259 chr2L 10480355 10480413 chr2L 10480505 10480537 11 147 4.0 4.5 4.2 2.1 182 chr2L 10480355 intron RluA-2 + chr2L 10480446 intron RluA-2 + chr2L 10480537 intron RluA-2 + chr2L_11_10480001 chr2L_10480001 RAL-138 260 chr2L 10574538 10574560 chr2L 10574883 10574900 4 344 2.0 1.5 1.8 1.4 362 chr2L 10574538 intron Trim9 + chr2L 10574719 intron Trim9 + chr2L 10574900 intron Trim9 + chr2L_4_10570001 chr2L_10570001 RAL-138 261 chr2L 10580775 10580809 chr2L 10580878 10580890 6 100 1.5 3.0 2.2 1.9 115 chr2L 10580775 intron Trim9 + chr2L 10580832 intron Trim9 + chr2L 10580890 intron Trim9 + chr2L_6_10580001 chr2L_10580001 RAL-138 262 chr2L 10592825 10592867 chr2L 10600512 10600554 opus 10 7687 3.0 1.5 2.2 3.1 7729 chr2L 10592825 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600554 intron Trim9 + chr2L_10_10595001 chr2L_10595001 RAL-138 263 chr2L 10624903 10624958 chr2L 10625056 10625100 38 152 5.0 9.5 7.2 4.6 197 chr2L 10624903 intron Trim9 + chr2L 10625002 intron Trim9 + chr2L 10625100 intron Trim9 + chr2L_38_10625001 chr2L_10625001 RAL-138 264 chr2L 10688519 10688570 chr2L 10688620 10688671 15 101 5.5 2.5 4.0 3.0 152 chr2L 10688519 intergenic CG7294 - chr2L 10688595 intergenic CG7294 - chr2L 10688671 intergenic CG7294 - chr2L_15_10685001 chr2L_10685001 RAL-138 265 chr2L 10736217 10736248 chr2L 10736326 10736361 23 112 11.5 8.5 10.0 2.1 144 chr2L 10736217 intergenic Vha16-5 -,Nup107 - chr2L 10736289 intergenic Vha16-5 -,Nup107 - chr2L 10736361 3` UTR Vha16-5 - chr2L_23_10735001 chr2L_10735001 RAL-138 266 chr2L 10762389 10762427 chr2L 10762491 10762529 22 101 9.5 11.0 10.2 2.0 140 chr2L 10762389 intron CG6495 + chr2L 10762459 intron CG6495 + chr2L 10762529 exon CG6495 + chr2L_22_10760001 chr2L_10760001 RAL-138 267 chr2L 10785035 10785086 chr2L 10785135 10785187 13 100 3.0 5.0 4.0 2.6 152 chr2L 10785035 intron CG31869 - chr2L 10785111 intron CG31869 - chr2L 10785187 intron CG31869 - chr2L_13_10785001 chr2L_10785001 RAL-138 268 chr2L 10836737 10836779 chr2L 10836841 10836882 8 102 3.5 2.5 3.0 2.0 145 chr2L 10836737 intron Nos - chr2L 10836810 intron Nos - chr2L 10836882 intron Nos - chr2L_8_10835001 chr2L_10835001 RAL-138 269 chr2L 10862843 10862876 chr2L 10864466 10864473 Rt1c 23 1622 6.0 10.5 8.2 2.5 1630 chr2L 10862843 3` UTR CR43807 - chr2L 10863658 intron CR43807 - chr2L 10864473 3` UTR CR43807 - chr2L_23_10860001 chr2L_10860001 RAL-138 270 chr2L 10891462 10891520 chr2L 10891601 10891659 7 139 0.5 2.5 1.5 2.8 197 chr2L 10891462 intergenic not near genes chr2L 10891560 intergenic not near genes chr2L 10891659 intergenic not near genes chr2L_7_10890001 chr2L_10890001 RAL-138 271 chr2L 10912969 10912992 chr2L 10913073 10913095 5 104 6.5 4.5 5.5 0.8 126 chr2L 10912969 intergenic not near genes chr2L 10913032 intergenic not near genes chr2L 10913095 intergenic not near genes chr2L_5_10910001 chr2L_10910001 RAL-138 272 chr2L 10919790 10919827 chr2L 10919902 10919940 5 113 2.5 5.5 4.0 1.0 150 chr2L 10919790 intron dpr2 - chr2L 10919865 intron dpr2 - chr2L 10919940 intron dpr2 - chr2L_5_10915001 chr2L_10915001 RAL-138 273 chr2L 10946936 10946962 chr2L 10956174 10956197 roo 9 9239 6.0 2.0 4.0 1.8 9261 chr2L 10946936 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956197 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-138 274 chr2L 10961539 10961572 chr2L 10961751 10961781 4 209 0.0 0.5 0.2 3.3 242 chr2L 10961539 intron dpr2 - chr2L 10961660 intron dpr2 - chr2L 10961781 intron dpr2 - chr2L_4_10960001 chr2L_10960001 RAL-138 275 chr2L 11070069 11070080 chr2L 11070160 11070192 4 98 26.5 13.0 19.8 0.2 123 chr2L 11070069 intergenic not near genes chr2L 11070130 intergenic not near genes chr2L 11070192 intergenic not near genes chr2L_4_11070001 chr2L_11070001 RAL-138 276 chr2L 11145784 11145802 chr2L 11145912 11145930 6 128 0.0 5.5 2.8 1.6 146 chr2L 11145784 intron Gyc32E - chr2L 11145857 intron Gyc32E - chr2L 11145930 intron Gyc32E - chr2L_6_11145001 chr2L_11145001 RAL-138 277 chr2L 11220828 11220864 chr2L 11220938 11220974 6 110 3.5 2.5 3.0 1.5 146 chr2L 11220828 intron ab + chr2L 11220901 intron ab + chr2L 11220974 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-138 278 chr2L 11283869 11283877 chr2L 11284689 11284704 9 821 76.5 76.0 76.2 0.1 835 chr2L 11283869 exon mre11 + chr2L 11284286 3` UTR mre11 + chr2L 11284704 exon Osi21 - chr2L_9_11280001 chr2L_11280001 RAL-138 279 chr2L 11283881 11283893 chr2L 11284709 11284714 9 822 75.5 75.5 75.5 0.1 833 chr2L 11283881 exon mre11 + chr2L 11284298 3` UTR mre11 + chr2L 11284714 exon Osi21 - chr2L_9_11280001 chr2L_11280001 RAL-138 280 chr2L 11283873 11283922 chr2L 11284715 11284742 29 823 83.5 74.5 79.0 0.4 869 chr2L 11283873 exon mre11 + chr2L 11284308 3` UTR mre11 + chr2L 11284742 intron Osi21 - chr2L_29_11280001 chr2L_11280001 RAL-138 281 chr2L 11364458 11364502 chr2L 11364559 11364603 7 101 2.5 3.5 3.0 1.8 145 chr2L 11364458 intron salr + chr2L 11364530 intron salr + chr2L 11364603 intron salr + chr2L_7_11360001 chr2L_11360001 RAL-138 282 chr2L 11404774 11404795 chr2L 11404875 11404896 6 101 2.0 2.0 2.0 2.0 122 chr2L 11404774 intergenic not near genes chr2L 11404835 intergenic not near genes chr2L 11404896 intergenic not near genes chr2L_6_11400001 chr2L_11400001 RAL-138 283 chr2L 11418630 11418688 chr2L 11418734 11418771 9 101 2.0 3.0 2.5 2.6 141 chr2L 11418630 intergenic not near genes chr2L 11418700 intergenic not near genes chr2L 11418771 intergenic not near genes chr2L_9_11415001 chr2L_11415001 RAL-138 284 chr2L 11537168 11537210 chr2L 11537269 11537288 5 100 4.0 15.0 9.5 0.5 120 chr2L 11537168 intergenic CG43438 + chr2L 11537228 intergenic CG43438 + chr2L 11537288 intergenic CG43438 + chr2L_5_11535001 chr2L_11535001 RAL-138 285 chr2L 11563635 11563669 chr2L 11568839 11568898 copia 4 5220 1.0 0.0 0.5 2.7 5263 chr2L 11563635 intergenic not near genes chr2L 11566266 intergenic not near genes chr2L 11568898 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-138 286 chr2L 11610522 11610569 chr2L 11610626 11610672 4 104 4.5 1.5 3.0 1.0 150 chr2L 11610522 intron,3` UTR kek2 +,spag4 - chr2L 11610597 intron,3` UTR kek2 +,spag4 - chr2L 11610672 intron,exon kek2 +,spag4 - chr2L_4_11610001 chr2L_11610001 RAL-138 287 chr2L 11614078 11614085 chr2L 11615549 11615591 hopper2 5 1494 4.0 4.0 4.0 1.0 1513 chr2L 11614078 intron kek2 + chr2L 11614834 intron kek2 + chr2L 11615591 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-138 288 chr2L 11673632 11673689 chr2L 11673752 11673809 7 117 1.0 1.0 1.0 3.5 177 chr2L 11673632 intergenic not near genes chr2L 11673720 intergenic not near genes chr2L 11673809 intergenic not near genes chr2L_7_11670001 chr2L_11670001 RAL-138 289 chr2L 11698125 11698165 chr2L 11698560 11698600 4 435 2.5 7.0 4.8 0.7 475 chr2L 11698125 intergenic not near genes chr2L 11698362 intergenic not near genes chr2L 11698600 intergenic not near genes chr2L_4_11695001 chr2L_11695001 RAL-138 290 chr2L 11713510 11713524 chr2L 11720977 11721016 blood 6 7480 4.0 2.0 3.0 1.5 7506 chr2L 11713510 intergenic not near genes chr2L 11717263 intergenic not near genes chr2L 11721016 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-138 291 chr2L 11723073 11723118 chr2L 11723179 11723189 5 97 2.5 1.5 2.0 1.7 116 chr2L 11723073 intergenic not near genes chr2L 11723131 intergenic not near genes chr2L 11723189 intergenic not near genes chr2L_5_11720001 chr2L_11720001 RAL-138 292 chr2L 11786907 11786940 chr2L 11787013 11787064 7 121 2.5 5.5 4.0 1.4 157 chr2L 11786907 intergenic not near genes chr2L 11786986 intergenic not near genes chr2L 11787064 intergenic not near genes chr2L_7_11785001 chr2L_11785001 RAL-138 293 chr2L 11865494 11865505 chr2L 11865631 11865642 5 137 9.5 5.0 7.2 0.6 148 chr2L 11865494 intron Pde1c - chr2L 11865568 intron Pde1c - chr2L 11865642 intron Pde1c - chr2L_5_11865001 chr2L_11865001 RAL-138 294 chr2L 11865507 11865525 chr2L 11865629 11865662 4 133 5.5 4.5 5.0 0.7 155 chr2L 11865507 intron Pde1c - chr2L 11865584 intron Pde1c - chr2L 11865662 intron Pde1c - chr2L_4_11865001 chr2L_11865001 RAL-138 295 chr2L 11869621 11869668 chr2L 11869727 11869774 10 105 2.5 2.5 2.5 2.9 153 chr2L 11869621 intron Pde1c - chr2L 11869698 intron Pde1c - chr2L 11869774 intron Pde1c - chr2L_10_11865001 chr2L_11865001 RAL-138 296 chr2L 11888057 11888108 chr2L 11888288 11888328 11 226 5.0 1.5 3.2 2.6 271 chr2L 11888057 intron Pde1c - chr2L 11888192 intron Pde1c - chr2L 11888328 intron Pde1c - chr2L_11_11885001 chr2L_11885001 RAL-138 297 chr2L 11941716 11941754 chr2L 11941857 11941875 5 137 2.5 2.0 2.2 1.6 159 chr2L 11941716 intergenic not near genes chr2L 11941796 intergenic not near genes chr2L 11941875 intergenic not near genes chr2L_5_11940001 chr2L_11940001 RAL-138 298 chr2L 12067316 12067350 chr2L 12074393 12074427 297 11 7077 2.5 3.0 2.8 2.9 7111 chr2L 12067316 intergenic not near genes chr2L 12070872 intergenic not near genes chr2L 12074427 intergenic not near genes chr2L_11_12070001 chr2L_12070001 RAL-138 299 chr2L 12132700 12132742 chr2L 12132811 12132853 9 111 0.0 1.5 0.8 5.0 153 chr2L 12132700 intron rho-6 - chr2L 12132776 intron rho-6 - chr2L 12132853 intron rho-6 - chr2L_9_12130001 chr2L_12130001 RAL-138 300 chr2L 12157582 12157626 chr2L 12157686 12157718 6 100 0.5 1.0 0.8 3.3 136 chr2L 12157582 intron CG31760 + chr2L 12157650 intron CG31760 + chr2L 12157718 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-138 301 chr2L 12158490 12158541 chr2L 12158707 12158757 6 213 1.5 1.5 1.5 2.4 267 chr2L 12158490 intron CG31760 + chr2L 12158624 intron CG31760 + chr2L 12158757 intron CG31760 + chr2L_6_12155001 chr2L_12155001 RAL-138 302 chr2L 12202618 12202641 chr2L 12202704 12202707 4 81 1.5 4.5 3.0 1.0 89 chr2L 12202618 intron aret + chr2L 12202662 intron aret + chr2L 12202707 intron aret + chr2L_4_12200001 chr2L_12200001 RAL-138 303 chr2L 12236294 12236315 chr2L 12236380 12236418 6 95 2.5 4.5 3.5 1.3 124 chr2L 12236294 intron aret + chr2L 12236356 intron aret + chr2L 12236418 intron aret + chr2L_6_12235001 chr2L_12235001 RAL-138 304 chr2L 12244089 12244102 chr2L 12244222 12244238 4 135 15.0 5.0 10.0 0.4 149 chr2L 12244089 intron aret + chr2L 12244164 intron aret + chr2L 12244238 intron aret + chr2L_4_12240001 chr2L_12240001 RAL-138 305 chr2L 12244111 12244127 chr2L 12244218 12244238 5 125 7.0 4.5 5.8 0.7 127 chr2L 12244111 intron aret + chr2L 12244174 intron aret + chr2L 12244238 intron aret + chr2L_5_12240001 chr2L_12240001 RAL-138 306 chr2L 12272162 12272196 chr2L 12272263 12272297 13 101 2.5 10.0 6.2 1.8 135 chr2L 12272162 intron aret + chr2L 12272230 intron aret + chr2L 12272297 intron aret + chr2L_13_12270001 chr2L_12270001 RAL-138 307 chr2L 12363162 12363196 chr2L 12363275 12363309 6 113 0.5 4.5 2.5 1.7 147 chr2L 12363162 intron bru-2 + chr2L 12363236 intron bru-2 + chr2L 12363309 intron bru-2 + chr2L_6_12360001 chr2L_12360001 RAL-138 308 chr2L 12444765 12444818 chr2L 12444872 12444924 11 106 4.0 3.0 3.5 2.4 159 chr2L 12444765 intron Oatp33Ea - chr2L 12444844 intron Oatp33Ea - chr2L 12444924 intron Oatp33Ea - chr2L_11_12440001 chr2L_12440001 RAL-138 309 chr2L 12487864 12487918 chr2L 12487970 12488024 19 104 3.5 4.5 4.0 3.8 160 chr2L 12487864 intron bun - chr2L 12487944 intron bun - chr2L 12488024 intron bun - chr2L_19_12485001 chr2L_12485001 RAL-138 310 chr2L 12529223 12529412 chr2L 12529381 12529513 8 151 0.0 0.0 0.0 8.0 290 chr2L 12529223 intron bun - chr2L 12529368 intron bun - chr2L 12529513 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-138 311 chr2L 12638752 12638808 chr2L 12638880 12638936 14 128 4.5 4.0 4.2 2.7 184 chr2L 12638752 intron Ref2 - chr2L 12638844 intron Ref2 - chr2L 12638936 intron Ref2 - chr2L_14_12635001 chr2L_12635001 RAL-138 312 chr2L 12653762 12653804 chr2L 12653904 12653945 17 141 4.0 4.5 4.2 3.3 183 chr2L 12653762 intergenic not near genes chr2L 12653854 intergenic not near genes chr2L 12653945 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-138 313 chr2L 12688361 12688409 chr2L 12688634 12688678 10 270 3.5 3.5 3.5 2.2 317 chr2L 12688361 intergenic not near genes chr2L 12688520 intergenic not near genes chr2L 12688678 intergenic not near genes chr2L_10_12685001 chr2L_12685001 RAL-138 314 chr2L 12690417 12690467 chr2L 12690522 12690572 27 105 4.5 12.0 8.2 2.9 155 chr2L 12690417 3` UTR CG5525 - chr2L 12690494 3` UTR CG5525 - chr2L 12690572 intron CG5525 - chr2L_27_12690001 chr2L_12690001 RAL-138 315 chr2L 12717346 12717349 chr2L 12717492 12717499 6 149 4.5 16.5 10.5 0.5 153 chr2L 12717346 intron Pih1D1 - chr2L 12717422 intron Pih1D1 - chr2L 12717499 intron Pih1D1 - chr2L_6_12715001 chr2L_12715001 RAL-138 316 chr2L 12728906 12728945 chr2L 12729169 12729210 pogo 5 264 2.0 3.5 2.8 1.3 304 chr2L 12728906 intron MRP + chr2L 12729058 intron MRP + chr2L 12729210 exon MRP + chr2L_5_12725001 chr2L_12725001 RAL-138 317 chr2L 12731044 12731087 chr2L 12735836 12735879 F-element 12 4792 5.5 6.0 5.8 1.8 4835 chr2L 12731044 intron MRP + chr2L 12733462 intron MRP + chr2L 12735879 intron MRP + chr2L_12_12730001 chr2L_12730001 RAL-138 318 chr2L 12739158 12739199 chr2L 12743964 12743996 Doc 6 4804 3.0 7.5 5.2 1.0 4838 chr2L 12739158 exon MRP + chr2L 12741577 intron MRP + chr2L 12743996 exon MRP + chr2L_6_12740001 chr2L_12740001 RAL-138 319 chr2L 12760220 12760256 chr2L 12760341 12760377 11 121 1.0 2.0 1.5 4.4 157 chr2L 12760220 intergenic CG15483 - chr2L 12760298 intergenic CG15483 - chr2L 12760377 3` UTR CG15483 - chr2L_11_12760001 chr2L_12760001 RAL-138 320 chr2L 12763803 12763863 chr2L 12764038 12764088 BS 4 232 0.0 0.0 0.0 4.0 285 chr2L 12763803 intergenic not near genes chr2L 12763946 intergenic not near genes chr2L 12764088 intergenic not near genes chr2L_4_12760001 chr2L_12760001 RAL-138 321 chr2L 12781784 12781813 chr2L 12789252 12789279 Quasimodo 7 7468 5.0 3.5 4.2 1.3 7495 chr2L 12781784 intergenic not near genes chr2L 12785532 intergenic not near genes chr2L 12789279 intergenic not near genes chr2L_7_12785001 chr2L_12785001 RAL-138 322 chr2L 12791590 12791630 chr2L 12795290 12795312 F-element 7 3689 3.0 4.0 3.5 1.6 3722 chr2L 12791590 intergenic not near genes chr2L 12793451 intergenic not near genes chr2L 12795312 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-138 323 chr2L 12807414 12807462 chr2L 12807521 12807563 6 106 2.0 1.0 1.5 2.4 149 chr2L 12807414 intergenic CR43818 - chr2L 12807488 intergenic CR43818 - chr2L 12807563 intergenic CR43818 - chr2L_6_12805001 chr2L_12805001 RAL-138 324 chr2L 12861679 12861718 chr2L 12863170 12863209 hobo 10 1487 1.5 5.5 3.5 2.2 1530 chr2L 12861679 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863209 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-138 325 chr2L 12894036 12894047 chr2L 12895482 12895539 hobo 4 1466 3.5 3.5 3.5 0.9 1503 chr2L 12894036 intergenic not near genes chr2L 12894788 intergenic not near genes chr2L 12895539 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-138 326 chr2L 12933832 12933881 chr2L 12941324 12941373 blood 7 7492 3.0 2.5 2.8 1.8 7541 chr2L 12933832 intergenic not near genes chr2L 12937602 intergenic not near genes chr2L 12941373 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-138 327 chr2L 12945950 12946000 chr2L 12946054 12946105 5 104 1.0 3.5 2.2 1.6 155 chr2L 12945950 intergenic not near genes chr2L 12946028 intergenic not near genes chr2L 12946105 intergenic not near genes chr2L_5_12945001 chr2L_12945001 RAL-138 328 chr2L 12963778 12963821 chr2L 12963904 12963948 10 126 3.5 3.0 3.2 2.4 170 chr2L 12963778 intergenic not near genes chr2L 12963863 intergenic not near genes chr2L 12963948 intergenic not near genes chr2L_10_12960001 chr2L_12960001 RAL-138 329 chr2L 13147743 13147775 chr2L 13147844 13147876 6 101 2.5 2.5 2.5 1.7 133 chr2L 13147743 intergenic not near genes chr2L 13147810 intergenic not near genes chr2L 13147876 intergenic not near genes chr2L_6_13145001 chr2L_13145001 RAL-138 330 chr2L 13266353 13266397 chr2L 13266466 13266509 20 111 2.0 4.5 3.2 4.8 156 chr2L 13266353 intron CG44085 + chr2L 13266431 intron CG44085 + chr2L 13266509 intron CG44085 + chr2L_20_13265001 chr2L_13265001 RAL-138 331 chr2L 13266404 13266412 chr2L 13266517 13266525 4 113 2.0 8.5 5.2 0.6 121 chr2L 13266404 intron CG44085 + chr2L 13266464 intron CG44085 + chr2L 13266525 intron CG44085 + chr2L_4_13265001 chr2L_13265001 RAL-138 332 chr2L 13405631 13405673 chr2L 13410450 13410495 Doc 28 4820 7.5 11.0 9.2 2.7 4864 chr2L 13405631 exon CG7110 + chr2L 13408063 intron CG7110 + chr2L 13410495 intron CG7110 + chr2L_28_13405001 chr2L_13405001 RAL-138 333 chr2L 13432299 13432332 chr2L 13432401 13432418 8 96 2.0 0.0 1.0 4.0 119 chr2L 13432299 intron CG42784 + chr2L 13432358 intron CG42784 + chr2L 13432418 intron CG42784 + chr2L_8_13430001 chr2L_13430001 RAL-138 334 chr2L 13449447 13449494 chr2L 13456908 13456955 Quasimodo 16 7460 6.0 15.5 10.8 1.4 7508 chr2L 13449447 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453201 intron CG42784 + chr2L 13456955 intron CG42784 + chr2L_16_13450001 chr2L_13450001 RAL-138 335 chr2L 13481436 13481465 chr2L 13482068 13482096 jockey 7 629 5.5 8.0 6.8 0.9 660 chr2L 13481436 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482096 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-138 336 chr2L 13536255 13536265 chr2L 13536372 13536382 5 117 13.5 12.0 12.8 0.4 127 chr2L 13536255 intron B4 - chr2L 13536318 intron B4 - chr2L 13536382 intron B4 - chr2L_5_13535001 chr2L_13535001 RAL-138 337 chr2L 13536268 13536303 chr2L 13536371 13536393 18 104 3.5 12.0 7.8 2.0 125 chr2L 13536268 intron B4 - chr2L 13536330 intron B4 - chr2L 13536393 intron B4 - chr2L_18_13535001 chr2L_13535001 RAL-138 338 chr2L 13543951 13543965 chr2L 13544043 13544053 5 95 4.0 7.0 5.5 0.8 102 chr2L 13543951 intron B4 - chr2L 13544002 intron B4 - chr2L 13544053 intron B4 - chr2L_5_13540001 chr2L_13540001 RAL-138 339 chr2L 13560378 13560419 chr2L 13565224 13565265 F-element 9 4846 3.5 1.0 2.2 2.8 4887 chr2L 13560378 intron kuz + chr2L 13562822 intron kuz + chr2L 13565265 intron kuz + chr2L_9_13560001 chr2L_13560001 RAL-138 340 chr2L 13622129 13622164 chr2L 13622253 13622259 5 116 2.5 1.5 2.0 1.7 130 chr2L 13622129 intron kuz + chr2L 13622194 intron kuz + chr2L 13622259 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-138 341 chr2L 13622165 13622171 chr2L 13622244 13622255 4 90 2.0 1.0 1.5 1.6 90 chr2L 13622165 intron kuz + chr2L 13622210 intron kuz + chr2L 13622255 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-138 342 chr2L 13692983 13693032 chr2L 13693084 13693131 8 100 2.5 2.0 2.2 2.5 148 chr2L 13692983 intron CG31814 - chr2L 13693057 intron CG31814 - chr2L 13693131 intron CG31814 - chr2L_8_13690001 chr2L_13690001 RAL-138 343 chr2L 13699551 13699587 chr2L 13699635 13699688 5 97 3.5 3.0 3.2 1.2 137 chr2L 13699551 intron CG31814 - chr2L 13699620 intron CG31814 - chr2L 13699688 intron CG31814 - chr2L_5_13695001 chr2L_13695001 RAL-138 344 chr2L 13733752 13733779 chr2L 13733896 13733923 12 143 1.5 2.0 1.8 4.3 171 chr2L 13733752 intergenic not near genes chr2L 13733838 intergenic not near genes chr2L 13733923 intergenic not near genes chr2L_12_13730001 chr2L_13730001 RAL-138 345 chr2L 13761798 13761835 chr2L 13762933 13762944 Doc 5 1129 2.0 3.5 2.8 1.3 1146 chr2L 13761798 intron TM9SF4 + chr2L 13762371 intron TM9SF4 + chr2L 13762944 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-138 346 chr2L 13800153 13800199 chr2L 13800282 13800328 17 129 5.0 5.0 5.0 2.8 175 chr2L 13800153 intergenic Sec71 + chr2L 13800240 intergenic not near genes chr2L 13800328 intergenic not near genes chr2L_17_13800001 chr2L_13800001 RAL-138 347 chr2L 13842111 13842142 chr2L 13842220 13842251 7 109 2.0 0.0 1.0 3.5 140 chr2L 13842111 intron CenG1A + chr2L 13842181 intron CenG1A + chr2L 13842251 intron CenG1A + chr2L_7_13840001 chr2L_13840001 RAL-138 348 chr2L 13853077 13853109 chr2L 13862252 13862284 roo 4 9175 3.5 3.5 3.5 0.9 9207 chr2L 13853077 intron CenG1A + chr2L 13857680 intron CenG1A + chr2L 13862284 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-138 349 chr2L 13870611 13870658 chr2L 13870741 13870788 15 126 3.0 3.5 3.2 3.6 177 chr2L 13870611 intron CenG1A + chr2L 13870700 intron CenG1A + chr2L 13870788 intron CenG1A + chr2L_15_13870001 chr2L_13870001 RAL-138 350 chr2L 13873743 13873789 chr2L 13873846 13873893 4 104 3.5 3.0 3.2 1.0 150 chr2L 13873743 intron CenG1A + chr2L 13873818 intron CenG1A + chr2L 13873893 intron CenG1A + chr2L_4_13870001 chr2L_13870001 RAL-138 351 chr2L 13883330 13883378 chr2L 13883435 13883485 8 106 1.5 1.0 1.2 3.6 155 chr2L 13883330 intron CenG1A + chr2L 13883408 intron CenG1A + chr2L 13883485 intron CenG1A + chr2L_8_13880001 chr2L_13880001 RAL-138 352 chr2L 13918804 13918846 chr2L 13918916 13918956 10 112 2.0 2.5 2.2 3.1 152 chr2L 13918804 intron Ance-3 + chr2L 13918880 intron Ance-3 + chr2L 13918956 intron Ance-3 + chr2L_10_13915001 chr2L_13915001 RAL-138 353 chr2L 13972329 13972357 chr2L 13972872 13972903 7 548 6.0 3.0 4.5 1.3 574 chr2L 13972329 exon He - chr2L 13972616 intron He - chr2L 13972903 5` UTR He - chr2L_7_13970001 chr2L_13970001 RAL-138 354 chr2L 12978265 12978278 chr2L 14031323 14031347 4 1053061 36.0 7.5 21.8 0.2 1053082 chr2L 12978265 3` UTR Vha68-2 + chr2L 13504806 exon B4 - chr2L 14031347 exon CG18095 - chr2L_4_13500001 chr2L_13500001 RAL-138 355 chr2L 14063256 14063300 chr2L 14063362 14063405 4 106 4.0 3.5 3.8 0.8 149 chr2L 14063256 intron nAChRalpha5 + chr2L 14063330 intron nAChRalpha5 + chr2L 14063405 intron nAChRalpha5 + chr2L_4_14060001 chr2L_14060001 RAL-138 356 chr2L 14160664 14160719 chr2L 14160774 14160830 11 109 0.0 5.5 2.8 2.9 166 chr2L 14160664 intergenic CG17341 +,CG43332 - chr2L 14160747 intergenic CG17341 +,CG43332 - chr2L 14160830 intergenic CG17341 +,CG43332 - chr2L_11_14160001 chr2L_14160001 RAL-138 357 chr2L 14311469 14311490 chr2L 14311582 14311603 6 112 7.5 0.0 3.8 1.2 134 chr2L 14311469 intron wb + chr2L 14311536 intron wb + chr2L 14311603 intron wb + chr2L_6_14310001 chr2L_14310001 RAL-138 358 chr2L 14427206 14427232 chr2L 14427372 14427410 10 176 5.0 3.5 4.2 1.9 204 chr2L 14427206 intergenic not near genes chr2L 14427308 intergenic not near genes chr2L 14427410 intergenic not near genes chr2L_10_14425001 chr2L_14425001 RAL-138 359 chr2L 14587723 14587742 chr2L 14587968 14587987 INE-1 20 245 6.0 6.5 6.2 2.8 264 chr2L 14587723 intergenic CG42680 - chr2L 14587855 intergenic CG42680 - chr2L 14587987 3` UTR CG42680 - chr2L_20_14585001 chr2L_14585001 RAL-138 360 chr2L 14588359 14588418 chr2L 14588538 14588597 22 173 7.0 4.5 5.8 3.2 238 chr2L 14588359 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588597 intergenic CG42680 - chr2L_22_14585001 chr2L_14585001 RAL-138 361 chr2L 14601960 14602002 chr2L 14602069 14602110 12 108 1.5 2.5 2.0 4.0 150 chr2L 14601960 exon osp - chr2L 14602035 intron osp - chr2L 14602110 intron osp - chr2L_12_14600001 chr2L_14600001 RAL-138 362 chr2L 14657005 14657037 chr2L 14657099 14657122 6 99 5.5 2.0 3.8 1.2 117 chr2L 14657005 intron osp - chr2L 14657064 intron osp - chr2L 14657122 intron osp - chr2L_6_14655001 chr2L_14655001 RAL-138 363 chr2L 14658671 14658709 chr2L 14658777 14658815 5 106 0.5 3.5 2.0 1.7 144 chr2L 14658671 intron osp - chr2L 14658743 intron osp - chr2L 14658815 intron osp - chr2L_5_14655001 chr2L_14655001 RAL-138 364 chr2L 14694238 14694270 chr2L 14694387 14694419 5 149 2.0 2.0 2.0 1.7 181 chr2L 14694238 intergenic not near genes chr2L 14694328 intergenic not near genes chr2L 14694419 intergenic not near genes chr2L_5_14690001 chr2L_14690001 RAL-138 365 chr2L 13117673 13117682 chr2L 14729551 14729569 4 1611880 14.5 11.5 13.0 0.3 1611896 chr2L 13117673 intergenic not near genes chr2L 13923621 intron Ance-3 + chr2L 14729569 exon CG42685 - chr2L_4_13920001 chr2L_13920001 RAL-138 366 chr2L 14769338 14769386 chr2L 14769522 14769570 6 184 1.5 0.5 1.0 3.0 232 chr2L 14769338 intergenic not near genes chr2L 14769454 intergenic not near genes chr2L 14769570 intergenic not near genes chr2L_6_14765001 chr2L_14765001 RAL-138 367 chr2L 14803884 14803902 chr2L 14809081 14809130 copia 4 5220 2.5 2.5 2.5 1.1 5246 chr2L 14803884 intergenic not near genes chr2L 14806507 intergenic not near genes chr2L 14809130 intergenic not near genes chr2L_4_14805001 chr2L_14805001 RAL-138 368 chr2L 14840978 14841009 chr2L 14841090 14841112 13 111 2.5 11.5 7.0 1.6 134 chr2L 14840978 3` UTR CR43805 - chr2L 14841045 3` UTR CR43805 - chr2L 14841112 3` UTR CR43805 - chr2L_13_14840001 chr2L_14840001 RAL-138 369 chr2L 14887667 14887694 chr2L 14887770 14887797 7 103 4.0 0.0 2.0 2.3 130 chr2L 14887667 intergenic not near genes chr2L 14887732 intergenic not near genes chr2L 14887797 intergenic not near genes chr2L_7_14885001 chr2L_14885001 RAL-138 370 chr2L 14889945 14889976 chr2L 14890395 14890426 jockey 8 450 4.0 5.0 4.5 1.5 481 chr2L 14889945 intergenic not near genes chr2L 14890186 intergenic not near genes chr2L 14890426 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-138 371 chr2L 14938388 14938429 chr2L 14938509 14938550 7 121 3.0 3.5 3.2 1.7 162 chr2L 14938388 intron CG42313 - chr2L 14938469 intron CG42313 - chr2L 14938550 intron CG42313 - chr2L_7_14935001 chr2L_14935001 RAL-138 372 chr2L 14984371 14984401 chr2L 14991998 14992028 opus 5 7627 3.0 2.5 2.8 1.3 7657 chr2L 14984371 intron mol - chr2L 14988200 intron mol - chr2L 14992028 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-138 373 chr2L 15000857 15000881 chr2L 15000958 15000984 5 102 16.0 10.5 13.2 0.4 127 chr2L 15000857 intergenic not near genes chr2L 15000920 intergenic not near genes chr2L 15000984 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-138 374 chr2L 15003539 15003570 chr2L 15003647 15003679 6 109 3.5 6.5 5.0 1.0 140 chr2L 15003539 intergenic not near genes chr2L 15003609 intergenic not near genes chr2L 15003679 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-138 375 chr2L 15077873 15078093 chr2L 15077986 15078206 7 113 1.5 3.0 2.2 2.2 333 chr2L 15077873 intron CG15270 + chr2L 15078040 intron CG15270 + chr2L 15078206 intron CG15270 + chr2L_7_15075001 chr2L_15075001 RAL-138 376 chr2L 15087729 15087771 chr2L 15087864 15087906 32 133 8.0 11.5 9.8 3.0 177 chr2L 15087729 exon CG15270 + chr2L 15087818 intron CG15270 + chr2L 15087906 intron CG15270 + chr2L_32_15085001 chr2L_15085001 RAL-138 377 chr2L 15161254 15161275 chr2L 15161415 15161435 7 161 2.0 3.5 2.8 1.8 181 chr2L 15161254 intergenic CR44770 + chr2L 15161344 intergenic CR44770 + chr2L 15161435 intergenic CR44770 +,CG4168 - chr2L_7_15160001 chr2L_15160001 RAL-138 378 chr2L 15226356 15226392 chr2L 15226457 15226493 5 100 6.0 6.0 6.0 0.7 137 chr2L 15226356 intergenic not near genes chr2L 15226424 intergenic not near genes chr2L 15226493 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-138 379 chr2L 15309334 15309378 chr2L 15309462 15309506 7 128 2.5 1.0 1.8 2.5 172 chr2L 15309334 intergenic not near genes chr2L 15309420 intergenic not near genes chr2L 15309506 intergenic not near genes chr2L_7_15305001 chr2L_15305001 RAL-138 380 chr2L 15350877 15350933 chr2L 15350986 15351042 18 109 2.5 3.5 3.0 4.5 165 chr2L 15350877 intergenic not near genes chr2L 15350960 intergenic not near genes chr2L 15351042 intergenic not near genes chr2L_18_15350001 chr2L_15350001 RAL-138 381 chr2L 15354919 15354959 chr2L 15355022 15355073 5 112 4.0 2.5 3.2 1.2 154 chr2L 15354919 intergenic not near genes chr2L 15354996 intergenic not near genes chr2L 15355073 intergenic not near genes chr2L_5_15350001 chr2L_15350001 RAL-138 382 chr2L 15355686 15355745 chr2L 15355789 15355848 14 102 3.0 2.0 2.5 4.0 162 chr2L 15355686 intergenic not near genes chr2L 15355767 intergenic not near genes chr2L 15355848 intergenic not near genes chr2L_14_15355001 chr2L_15355001 RAL-138 383 chr2L 15446034 15446068 chr2L 15453528 15453562 blood 4 7494 4.5 5.0 4.8 0.7 7528 chr2L 15446034 intergenic not near genes chr2L 15449798 intergenic not near genes chr2L 15453562 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-138 384 chr2L 15482565 15482601 chr2L 15482726 15482762 10 161 2.5 4.0 3.2 2.4 197 chr2L 15482565 intergenic not near genes chr2L 15482664 intergenic not near genes chr2L 15482762 intergenic not near genes chr2L_10_15480001 chr2L_15480001 RAL-138 385 chr2L 15499887 15499945 chr2L 15499999 15500057 12 111 1.5 3.0 2.2 3.8 170 chr2L 15499887 intron lace + chr2L 15499972 intron lace + chr2L 15500057 intron lace + chr2L_12_15495001 chr2L_15495001 RAL-138 386 chr2L 15586387 15586439 chr2L 15593464 15593516 297 15 7077 2.0 3.5 2.8 3.9 7129 chr2L 15586387 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593516 intergenic not near genes chr2L_15_15585001 chr2L_15585001 RAL-138 387 chr2L 15887719 15887745 chr2L 15887877 15887903 7 156 0.0 3.5 1.8 2.5 184 chr2L 15887719 intergenic not near genes chr2L 15887811 intergenic not near genes chr2L 15887903 intergenic not near genes chr2L_7_15885001 chr2L_15885001 RAL-138 388 chr2L 15906165 15906194 chr2L 15906279 15906308 6 111 2.0 1.5 1.8 2.1 143 chr2L 15906165 intron beat-Ib - chr2L 15906236 intron beat-Ib - chr2L 15906308 intron beat-Ib - chr2L_6_15905001 chr2L_15905001 RAL-138 389 chr2L 15921799 15921821 chr2L 15921966 15921980 5 165 1.0 3.0 2.0 1.7 181 chr2L 15921799 intron beat-Ib - chr2L 15921890 intron beat-Ib - chr2L 15921980 intron beat-Ib - chr2L_5_15920001 chr2L_15920001 RAL-138 390 chr2L 15935172 15935211 chr2L 15935286 15935326 4 114 2.0 0.5 1.2 1.8 154 chr2L 15935172 intron beat-Ib - chr2L 15935249 intron beat-Ib - chr2L 15935326 intron beat-Ib - chr2L_4_15935001 chr2L_15935001 RAL-138 391 chr2L 15947142 15947181 chr2L 15947249 15947269 9 99 3.0 2.5 2.8 2.4 127 chr2L 15947142 intron beat-Ib - chr2L 15947206 intron beat-Ib - chr2L 15947269 intron beat-Ib - chr2L_9_15945001 chr2L_15945001 RAL-138 392 chr2L 15971995 15972002 chr2L 15972097 15972125 6 120 0.0 19.5 9.8 0.6 130 chr2L 15971995 intergenic not near genes chr2L 15972060 intergenic not near genes chr2L 15972125 intergenic not near genes chr2L_6_15970001 chr2L_15970001 RAL-138 393 chr2L 16001440 16001494 chr2L 16001553 16001607 17 113 0.5 4.0 2.2 5.3 167 chr2L 16001440 intron beat-Ic + chr2L 16001524 intron beat-Ic + chr2L 16001607 intron beat-Ic + chr2L_17_16000001 chr2L_16000001 RAL-138 394 chr2L 16043556 16043596 chr2L 16043665 16043706 7 110 0.5 0.5 0.5 4.7 150 chr2L 16043556 intron,intron BicC +,CG45084 + chr2L 16043631 intron,intron BicC +,CG45084 + chr2L 16043706 intron,intron BicC +,CG45084 + chr2L_7_16040001 chr2L_16040001 RAL-138 395 chr2L 16051591 16051611 chr2L 16051694 16051704 5 101 1.5 3.0 2.2 1.6 113 chr2L 16051591 intron beat-Ia + chr2L 16051648 intron beat-Ia + chr2L 16051704 intron beat-Ia + chr2L_5_16050001 chr2L_16050001 RAL-138 396 chr2L 10176023 10176024 chr2L 16071771 16071771 4 5895748 12.5 10.5 11.5 0.3 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-138 397 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 107 145889 10.0 12.0 11.0 8.9 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_107_16140001 chr2L_16140001 RAL-138 398 chr2L 16125165 16125174 chr2L 16125264 16125319 8 128 0.0 5.0 2.5 2.3 154 chr2L 16125165 intergenic not near genes chr2L 16125242 intergenic not near genes chr2L 16125319 intergenic not near genes chr2L_8_16125001 chr2L_16125001 RAL-138 399 chr2L 16141149 16141181 chr2L 16146381 16146413 copia 6 5232 3.0 0.5 1.8 2.1 5264 chr2L 16141149 intergenic not near genes chr2L 16143781 intergenic not near genes chr2L 16146413 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-138 400 chr2L 16153720 16153748 chr2L 16160813 16160841 297 4 7093 2.5 2.5 2.5 1.1 7121 chr2L 16153720 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160841 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-138 401 chr2L 9084336 9084340 chr2L 16217660 16217660 20 7133321 14.5 12.0 13.2 1.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_20_12650001 chr2L_12650001 RAL-138 402 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 69 145889 10.0 12.0 11.0 5.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_69_16140001 chr2L_16140001 RAL-138 403 chr2L 16217660 16217660 chr2L 18622718 18622719 8 2405058 12.0 18.0 15.0 0.5 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_8_17420001 chr2L_17420001 RAL-138 404 chr2L 16217660 16217660 chr2L 21768292 21768294 5 5550633 12.0 23.0 17.5 0.3 5550634 chr2L 16217660 intergenic not near genes chr2L 18992977 intergenic CG10650 - chr2L 21768294 intron CG31612 - chr2L_5_18990001 chr2L_18990001 RAL-138 405 chr2L 16242056 16242077 chr2L 16242173 16242194 8 117 2.0 0.0 1.0 4.0 138 chr2L 16242056 5` UTR CG42818 + chr2L 16242125 exon CG42818 + chr2L 16242194 exon CG42818 + chr2L_8_16240001 chr2L_16240001 RAL-138 406 chr2L 16280262 16280287 chr2L 16281435 16281460 1360 6 1183 8.5 8.0 8.2 0.7 1198 chr2L 16280262 intron crp - chr2L 16280861 intron crp - chr2L 16281460 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-138 407 chr2L 16298700 16298739 chr2L 16298804 16298843 12 95 6.0 2.5 4.2 2.3 143 chr2L 16298700 intron heix - chr2L 16298772 intron heix - chr2L 16298843 intron heix - chr2L_12_16295001 chr2L_16295001 RAL-138 408 chr2L 16372196 16372214 chr2L 16372349 16372367 4 153 2.0 3.0 2.5 1.1 171 chr2L 16372196 intergenic not near genes chr2L 16372282 intergenic not near genes chr2L 16372367 intergenic not near genes chr2L_4_16370001 chr2L_16370001 RAL-138 409 chr2L 16507944 16507967 chr2L 16508057 16508080 6 113 0.0 8.5 4.2 1.2 136 chr2L 16507944 intergenic CG5953 -,Tpr2 + chr2L 16508012 intergenic CG5953 -,Tpr2 + chr2L 16508080 3` UTR CG5953 - chr2L_6_16505001 chr2L_16505001 RAL-138 410 chr2L 16511946 16511985 chr2L 16519085 16519124 HMS-Beagle 18 7139 3.5 6.5 5.0 3.0 7178 chr2L 16511946 intron CG5953 - chr2L 16515535 intron CG5953 - chr2L 16519124 intron CG5953 - chr2L_18_16515001 chr2L_16515001 RAL-138 411 chr2L 16764946 16764993 chr2L 16765051 16765098 15 105 4.5 2.5 3.5 3.3 152 chr2L 16764946 intergenic not near genes chr2L 16765022 intergenic not near genes chr2L 16765098 intergenic not near genes chr2L_15_16765001 chr2L_16765001 RAL-138 412 chr2L 16864168 16864207 chr2L 16864377 16864391 5 204 4.5 8.0 6.2 0.7 223 chr2L 16864168 intergenic not near genes chr2L 16864280 intergenic not near genes chr2L 16864391 intergenic not near genes chr2L_5_16860001 chr2L_16860001 RAL-138 413 chr2L 16217660 16217660 chr2L 16917619 16917619 5 699959 12.0 21.5 16.8 0.3 699959 chr2L 16217660 intergenic not near genes chr2L 16567640 intron CG42389 + chr2L 16917619 intergenic not near genes chr2L_5_16565001 chr2L_16565001 RAL-138 414 chr2L 17005394 17005405 chr2L 17005515 17005527 6 121 9.5 3.5 6.5 0.8 133 chr2L 17005394 intergenic not near genes chr2L 17005460 intergenic not near genes chr2L 17005527 intergenic not near genes chr2L_6_17005001 chr2L_17005001 RAL-138 415 chr2L 17005409 17005433 chr2L 17005510 17005541 11 110 4.5 2.5 3.5 2.4 132 chr2L 17005409 intergenic not near genes chr2L 17005475 intergenic not near genes chr2L 17005541 intergenic not near genes chr2L_11_17005001 chr2L_17005001 RAL-138 416 chr2L 17032508 17032520 chr2L 17032618 17032630 4 109 1.0 2.0 1.5 1.6 122 chr2L 17032508 intergenic not near genes chr2L 17032569 intergenic not near genes chr2L 17032630 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-138 417 chr2L 17033904 17033944 chr2L 17034013 17034054 8 110 0.5 3.5 2.0 2.7 150 chr2L 17033904 intergenic not near genes chr2L 17033979 intergenic not near genes chr2L 17034054 intergenic not near genes chr2L_8_17030001 chr2L_17030001 RAL-138 418 chr2L 17074498 17074516 chr2L 17074600 17074621 4 104 3.5 3.5 3.5 0.9 123 chr2L 17074498 intergenic not near genes chr2L 17074560 intergenic not near genes chr2L 17074621 intergenic not near genes chr2L_4_17070001 chr2L_17070001 RAL-138 419 chr2L 17167540 17167579 chr2L 17167806 17167845 pogo 6 266 3.0 0.5 1.8 2.1 305 chr2L 17167540 intron,intron CG34106 +,beat-IIIa + chr2L 17167692 intron,intron CG34106 +,beat-IIIa + chr2L 17167845 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-138 420 chr2L 17208028 17208064 chr2L 17208149 17208171 4 115 4.0 2.0 3.0 1.0 143 chr2L 17208028 intron beat-IIIc - chr2L 17208100 intron beat-IIIc - chr2L 17208171 intron beat-IIIc - chr2L_4_17205001 chr2L_17205001 RAL-138 421 chr2L 17211829 17211836 chr2L 17211935 17211942 4 106 2.0 4.5 3.2 1.0 113 chr2L 17211829 intron beat-IIIc - chr2L 17211886 intron beat-IIIc - chr2L 17211942 intron beat-IIIc - chr2L_4_17210001 chr2L_17210001 RAL-138 422 chr2L 17226077 17226116 chr2L 17226181 17226220 4 104 2.0 1.5 1.8 1.4 143 chr2L 17226077 intron beat-IIIc - chr2L 17226148 intron beat-IIIc - chr2L 17226220 intron beat-IIIc - chr2L_4_17225001 chr2L_17225001 RAL-138 423 chr2L 17264723 17264767 chr2L 17264828 17264872 10 105 4.5 1.0 2.8 2.6 149 chr2L 17264723 intergenic not near genes chr2L 17264798 intergenic not near genes chr2L 17264872 intergenic not near genes chr2L_10_17260001 chr2L_17260001 RAL-138 424 chr2L 17273172 17273219 chr2L 17277980 17278022 F-element 11 4807 1.0 1.0 1.0 5.5 4850 chr2L 17273172 intergenic not near genes chr2L 17275597 intergenic not near genes chr2L 17278022 intergenic not near genes chr2L_11_17275001 chr2L_17275001 RAL-138 425 chr2L 17294260 17294308 chr2L 17294553 17294591 7 286 1.0 1.0 1.0 3.5 331 chr2L 17294260 intergenic not near genes chr2L 17294426 intergenic not near genes chr2L 17294591 intergenic not near genes chr2L_7_17290001 chr2L_17290001 RAL-138 426 chr2L 17319111 17319137 chr2L 17319211 17319238 6 99 2.5 7.5 5.0 1.0 127 chr2L 17319111 3` UTR CR45696 - chr2L 17319174 3` UTR CR45696 - chr2L 17319238 3` UTR CR45696 - chr2L_6_17315001 chr2L_17315001 RAL-138 427 chr2L 17380432 17380469 chr2L 17380726 17380764 9 289 5.0 7.0 6.0 1.3 332 chr2L 17380432 intron Lrch - chr2L 17380598 intron Lrch - chr2L 17380764 intron Lrch - chr2L_9_17380001 chr2L_17380001 RAL-138 428 chr2L 17466423 17466452 chr2L 17466540 17466570 7 118 1.5 3.0 2.2 2.2 147 chr2L 17466423 intron BicD - chr2L 17466496 intron BicD - chr2L 17466570 intron BicD - chr2L_7_17465001 chr2L_17465001 RAL-138 429 chr2L 17584073 17584092 chr2L 17584886 17584905 8 813 17.5 4.0 10.8 0.7 832 chr2L 17584073 5` UTR CR45111 + chr2L 17584489 intergenic CR45111 +,CR45112 - chr2L 17584905 3` UTR CR45112 - chr2L_8_17580001 chr2L_17580001 RAL-138 430 chr2L 17583880 17583908 chr2L 17584804 17584849 5 929 21.5 6.5 14.0 0.3 969 chr2L 17583880 intergenic CR45111 + chr2L 17584364 5` UTR CR45111 + chr2L 17584849 3` UTR CR45112 - chr2L_5_17580001 chr2L_17580001 RAL-138 431 chr2L 17727855 17727866 chr2L 17729347 17729358 hobo 4 1491 3.5 11.5 7.5 0.5 1503 chr2L 17727855 intron CadN - chr2L 17728606 intron CadN - chr2L 17729358 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-138 432 chr2L 17819896 17819940 chr2L 17825123 17825167 copia 14 5225 9.0 5.0 7.0 1.8 5271 chr2L 17819896 intron CadN2 - chr2L 17822532 intron CadN2 - chr2L 17825167 intron CadN2 - chr2L_14_17820001 chr2L_17820001 RAL-138 433 chr2L 17867400 17867450 chr2L 17867711 17867761 15 310 3.5 2.0 2.8 3.9 361 chr2L 17867400 intron CadN2 - chr2L 17867580 intron CadN2 - chr2L 17867761 intron CadN2 - chr2L_15_17865001 chr2L_17865001 RAL-138 434 chr2L 17879975 17880031 chr2L 17880087 17880143 17 111 1.5 1.5 1.5 6.8 168 chr2L 17879975 intergenic not near genes chr2L 17880059 intergenic not near genes chr2L 17880143 intergenic not near genes chr2L_17_17880001 chr2L_17880001 RAL-138 435 chr2L 17944403 17944446 chr2L 17944590 17944634 6 187 3.0 1.5 2.2 1.9 231 chr2L 17944403 intergenic not near genes chr2L 17944518 intergenic not near genes chr2L 17944634 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-138 436 chr2L 17951944 17951979 chr2L 17953436 17953471 hobo 5 1492 5.0 5.0 5.0 0.8 1527 chr2L 17951944 intergenic CR44398 -,CR44397 - chr2L 17952708 intergenic not near genes chr2L 17953471 intergenic not near genes chr2L_5_17950001 chr2L_17950001 RAL-138 437 chr2L 18051859 18051901 chr2L 18061029 18061073 roo 6 9170 5.5 2.0 3.8 1.2 9214 chr2L 18051859 intron rdo + chr2L 18056466 intron rdo + chr2L 18061073 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-138 438 chr2L 18095565 18095590 chr2L 18095671 18095696 8 106 6.5 4.5 5.5 1.2 131 chr2L 18095565 intergenic not near genes chr2L 18095630 intergenic not near genes chr2L 18095696 intergenic not near genes chr2L_8_18095001 chr2L_18095001 RAL-138 439 chr2L 18111228 18111234 chr2L 18111344 18111350 5 116 7.5 4.5 6.0 0.7 122 chr2L 18111228 intergenic not near genes chr2L 18111289 intergenic not near genes chr2L 18111350 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-138 440 chr2L 18202469 18202483 chr2L 18202568 18202586 6 102 17.0 12.5 14.8 0.4 117 chr2L 18202469 intron CG42750 - chr2L 18202528 intron CG42750 - chr2L 18202586 intron CG42750 - chr2L_6_18200001 chr2L_18200001 RAL-138 441 chr2L 18202485 18202509 chr2L 18202562 18202614 16 97 6.0 10.5 8.2 1.7 129 chr2L 18202485 intron CG42750 - chr2L 18202550 intron CG42750 - chr2L 18202614 intron CG42750 - chr2L_16_18200001 chr2L_18200001 RAL-138 442 chr2L 18286400 18286446 chr2L 18286518 18286564 6 118 2.0 3.5 2.8 1.6 164 chr2L 18286400 intergenic not near genes chr2L 18286482 intergenic not near genes chr2L 18286564 intergenic not near genes chr2L_6_18285001 chr2L_18285001 RAL-138 443 chr2L 18338999 18339040 chr2L 18339108 18339149 4 109 0.5 0.0 0.2 3.3 150 chr2L 18338999 intron Fas3 + chr2L 18339074 intron Fas3 + chr2L 18339149 intron Fas3 + chr2L_4_18335001 chr2L_18335001 RAL-138 444 chr2L 18416384 18416432 chr2L 18416642 18416689 11 254 3.0 4.5 3.8 2.3 305 chr2L 18416384 intergenic not near genes chr2L 18416536 intergenic not near genes chr2L 18416689 intergenic not near genes chr2L_11_18415001 chr2L_18415001 RAL-138 445 chr2L 18475015 18475029 chr2L 18475116 18475130 5 101 2.0 4.0 3.0 1.2 115 chr2L 18475015 intron CG10283 - chr2L 18475072 intron CG10283 - chr2L 18475130 intron CG10283 - chr2L_5_18475001 chr2L_18475001 RAL-138 446 chr2L 18550716 18550734 chr2L 18550895 18550920 4 184 6.0 2.5 4.2 0.8 204 chr2L 18550716 intron Pde11 - chr2L 18550818 intron Pde11 - chr2L 18550920 intron Pde11 - chr2L_4_18550001 chr2L_18550001 RAL-138 447 chr2L 18550753 18550760 chr2L 18550939 18550946 4 186 3.5 5.0 4.2 0.8 193 chr2L 18550753 intron Pde11 - chr2L 18550850 intron Pde11 - chr2L 18550946 intron Pde11 - chr2L_4_18550001 chr2L_18550001 RAL-138 448 chr2L 18587774 18587815 chr2L 18587921 18587957 8 144 5.5 0.0 2.8 2.1 183 chr2L 18587774 intron Pde11 - chr2L 18587866 intron Pde11 - chr2L 18587957 intron Pde11 - chr2L_8_18585001 chr2L_18585001 RAL-138 449 chr2L 16217660 16217660 chr2L 18622713 18622738 6 2405061 12.0 17.0 14.5 0.4 2405078 chr2L 16217660 intergenic not near genes chr2L 17420199 intron Dif - chr2L 18622738 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-138 450 chr2L 16217660 16217660 chr2L 18838869 18839056 4 2621320 12.0 61.0 36.5 0.1 2621396 chr2L 16217660 intergenic not near genes chr2L 17528358 exon CG15144 - chr2L 18839056 exon CG10600 - chr2L_4_17525001 chr2L_17525001 RAL-138 451 chr2L 18866307 18866316 chr2L 18866408 18866417 5 102 8.0 2.0 5.0 0.8 110 chr2L 18866307 intron tup - chr2L 18866362 intron tup - chr2L 18866417 intron tup - chr2L_5_18865001 chr2L_18865001 RAL-138 452 chr2L 18876840 18876861 chr2L 18876943 18876964 6 102 1.5 1.5 1.5 2.4 124 chr2L 18876840 intron tup - chr2L 18876902 intron tup - chr2L 18876964 intron tup - chr2L_6_18875001 chr2L_18875001 RAL-138 453 chr2L 18892719 18892775 chr2L 18892851 18892898 7 126 0.0 1.5 0.8 3.9 179 chr2L 18892719 intergenic not near genes chr2L 18892808 intergenic not near genes chr2L 18892898 intergenic not near genes chr2L_7_18890001 chr2L_18890001 RAL-138 454 chr2L 18907971 18908002 chr2L 18908079 18908110 10 106 8.5 2.0 5.2 1.6 139 chr2L 18907971 intergenic not near genes chr2L 18908040 intergenic not near genes chr2L 18908110 intergenic not near genes chr2L_10_18905001 chr2L_18905001 RAL-138 455 chr2L 18913977 18914022 chr2L 18914078 18914123 11 100 2.0 4.0 3.0 2.8 146 chr2L 18913977 intergenic not near genes chr2L 18914050 intergenic not near genes chr2L 18914123 intergenic not near genes chr2L_11_18910001 chr2L_18910001 RAL-138 456 chr2L 18990298 18990335 chr2L 18990434 18990471 5 136 4.5 5.0 4.8 0.9 173 chr2L 18990298 intergenic CG15170 - chr2L 18990384 intergenic CG15170 - chr2L 18990471 intergenic CG15170 - chr2L_5_18990001 chr2L_18990001 RAL-138 457 chr2L 19016217 19016273 chr2L 19016338 19016394 23 121 7.0 5.5 6.2 3.2 177 chr2L 19016217 intergenic not near genes chr2L 19016306 intergenic not near genes chr2L 19016394 intergenic not near genes chr2L_23_19015001 chr2L_19015001 RAL-138 458 chr2L 19024096 19024097 chr2L 21768291 21768292 15 2744195 28.5 23.5 26.0 0.6 2744196 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768292 intron CG31612 - chr2L_15_20395001 chr2L_20395001 RAL-138 459 chr2L 19075862 19076072 chr2L 19075994 19076173 37 121 11.5 9.5 10.5 3.2 311 chr2L 19075862 intergenic not near genes chr2L 19076018 intergenic not near genes chr2L 19076173 intergenic not near genes chr2L_37_19075001 chr2L_19075001 RAL-138 460 chr2L 19147346 19147389 chr2L 19154406 19154449 297 9 7058 3.0 1.0 2.0 3.0 7103 chr2L 19147346 intron brat + chr2L 19150898 intron brat + chr2L 19154449 intron brat + chr2L_9_19150001 chr2L_19150001 RAL-138 461 chr2L 19199658 19199702 chr2L 19199754 19199785 10 92 5.0 6.0 5.5 1.5 127 chr2L 19199658 intron drl + chr2L 19199722 intron drl + chr2L 19199785 intron drl + chr2L_10_19195001 chr2L_19195001 RAL-138 462 chr2L 19357543 19357553 chr2L 19357658 19357668 4 114 5.5 7.0 6.2 0.6 125 chr2L 19357543 intron dnt - chr2L 19357606 intron dnt - chr2L 19357668 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-138 463 chr2L 19374469 19374519 chr2L 19374603 19374653 4 133 1.0 1.5 1.2 1.8 184 chr2L 19374469 intergenic not near genes chr2L 19374561 intergenic not near genes chr2L 19374653 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-138 464 chr2L 19378323 19378365 chr2L 19378429 19378473 9 108 2.0 3.5 2.8 2.4 150 chr2L 19378323 intergenic not near genes chr2L 19378398 intergenic not near genes chr2L 19378473 intergenic not near genes chr2L_9_19375001 chr2L_19375001 RAL-138 465 chr2L 19405598 19405629 chr2L 19405713 19405744 8 115 5.0 3.5 4.2 1.5 146 chr2L 19405598 intron Pax - chr2L 19405671 intron Pax - chr2L 19405744 intron Pax - chr2L_8_19405001 chr2L_19405001 RAL-138 466 chr2L 19407695 19407727 chr2L 19407917 19407949 6 222 4.5 2.5 3.5 1.3 254 chr2L 19407695 intron Pax - chr2L 19407822 intron Pax - chr2L 19407949 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-138 467 chr2L 19437497 19437530 chr2L 19437614 19437647 25 117 8.0 6.5 7.2 3.0 150 chr2L 19437497 intron CG10237 - chr2L 19437572 intron CG10237 - chr2L 19437647 intron CG10237 - chr2L_25_19435001 chr2L_19435001 RAL-138 468 chr2L 19558504 19558534 chr2L 19558632 19558663 5 126 0.0 1.0 0.5 3.3 159 chr2L 19558504 intron Tep5 + chr2L 19558584 intron Tep5 + chr2L 19558663 intron Tep5 + chr2L_5_19555001 chr2L_19555001 RAL-138 469 chr2L 19559984 19560036 chr2L 19560262 19560313 9 277 0.5 5.0 2.8 2.4 329 chr2L 19559984 exon Tep5 + chr2L 19560148 exon Tep5 + chr2L 19560313 intron Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-138 470 chr2L 19561322 19561368 chr2L 19561490 19561534 5 164 1.5 0.0 0.8 2.8 212 chr2L 19561322 exon Tep5 + chr2L 19561428 exon Tep5 + chr2L 19561534 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-138 471 chr2L 19561496 19561547 chr2L 19562738 19562741 7 1234 0.0 2.5 1.2 3.2 1245 chr2L 19561496 exon Tep5 + chr2L 19562118 intron Tep5 + chr2L 19562741 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-138 472 chr2L 19620072 19620098 chr2L 19621086 19621112 jockey 6 1012 6.5 2.5 4.5 1.1 1040 chr2L 19620072 intron Lar + chr2L 19620592 intron Lar + chr2L 19621112 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-138 473 chr2L 19620100 19620123 chr2L 19621082 19621136 jockey 6 1007 3.5 1.5 2.5 1.7 1036 chr2L 19620100 intron Lar + chr2L 19620618 intron Lar + chr2L 19621136 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-138 474 chr2L 19638514 19638554 chr2L 19638627 19638667 9 113 4.5 1.5 3.0 2.2 153 chr2L 19638514 intron Lar + chr2L 19638590 intron Lar + chr2L 19638667 intron Lar + chr2L_9_19635001 chr2L_19635001 RAL-138 475 chr2L 19699091 19699141 chr2L 19699290 19699341 16 198 2.0 3.0 2.5 4.6 250 chr2L 19699091 intron Lar + chr2L 19699216 intron Lar + chr2L 19699341 intron Lar + chr2L_16_19695001 chr2L_19695001 RAL-138 476 chr2L 19703515 19703565 chr2L 19712676 19712702 roo 18 9159 3.5 9.0 6.2 2.5 9187 chr2L 19703515 intron Lar + chr2L 19708108 intron Lar + chr2L 19712702 intron Lar + chr2L_18_19705001 chr2L_19705001 RAL-138 477 chr2L 19718498 19718520 chr2L 19718619 19718641 12 121 13.5 14.5 14.0 0.8 143 chr2L 19718498 intron Lar + chr2L 19718570 intron Lar + chr2L 19718641 intron Lar + chr2L_12_19715001 chr2L_19715001 RAL-138 478 chr2L 19737332 19737387 chr2L 19740826 19740853 1360 5 3476 1.0 3.5 2.2 1.6 3521 chr2L 19737332 intergenic Nf-YB + chr2L 19739092 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-138 479 chr2L 19762784 19762828 chr2L 19763051 19763095 pogo 8 267 4.5 6.5 5.5 1.2 311 chr2L 19762784 exon fbp - chr2L 19762940 intron fbp - chr2L 19763095 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-138 480 chr2L 19776635 19776660 chr2L 19776740 19776753 10 103 9.0 3.0 6.0 1.4 118 chr2L 19776635 3` UTR CdGAPr - chr2L 19776694 3` UTR CdGAPr - chr2L 19776753 3` UTR CdGAPr - chr2L_10_19775001 chr2L_19775001 RAL-138 481 chr2L 19888267 19888316 chr2L 19888372 19888421 14 105 4.5 3.5 4.0 2.8 154 chr2L 19888267 intron sick + chr2L 19888344 intron sick + chr2L 19888421 intron sick + chr2L_14_19885001 chr2L_19885001 RAL-138 482 chr2L 19911263 19911322 chr2L 19911376 19911435 15 112 4.5 5.0 4.8 2.6 172 chr2L 19911263 intron,3` UTR sick +,CR43097 - chr2L 19911349 intron,3` UTR sick +,CR43097 - chr2L 19911435 intron,3` UTR sick +,CR43097 - chr2L_15_19910001 chr2L_19910001 RAL-138 483 chr2L 19919225 19919236 chr2L 19919538 19919578 5 331 4.5 1.5 3.0 1.2 353 chr2L 19919225 intron sick + chr2L 19919402 intron sick + chr2L 19919578 intron sick + chr2L_5_19915001 chr2L_19915001 RAL-138 484 chr2L 20005848 20005896 chr2L 20010949 20010997 flea 7 5101 1.0 1.0 1.0 3.5 5149 chr2L 20005848 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010997 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-138 485 chr2L 20045645 20045687 chr2L 20045756 20045769 5 106 2.0 3.5 2.8 1.3 124 chr2L 20045645 intron sNPF + chr2L 20045707 intron sNPF + chr2L 20045769 intron sNPF + chr2L_5_20045001 chr2L_20045001 RAL-138 486 chr2L 20079492 20079545 chr2L 20079638 20079691 14 146 4.0 6.5 5.2 2.3 199 chr2L 20079492 intron,intron neb +,fok - chr2L 20079592 intron,intron neb +,fok - chr2L 20079691 intron,intron neb +,fok - chr2L_14_20075001 chr2L_20075001 RAL-138 487 chr2L 20124311 20124350 chr2L 20124413 20124453 4 103 0.0 1.5 0.8 2.2 142 chr2L 20124311 intergenic not near genes chr2L 20124382 intergenic not near genes chr2L 20124453 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-138 488 chr2L 20272103 20272141 chr2L 20282827 20282877 copia 14 10734 7.0 8.0 7.5 1.6 10774 chr2L 20272103 intergenic not near genes chr2L 20277490 intergenic not near genes chr2L 20282877 intergenic not near genes chr2L_14_20275001 chr2L_20275001 RAL-138 489 chr2L 20296495 20296528 chr2L 20296601 20296634 4 106 0.0 2.5 1.2 1.8 139 chr2L 20296495 intergenic CR43414 - chr2L 20296564 intergenic CR43414 - chr2L 20296634 intergenic CR43414 - chr2L_4_20295001 chr2L_20295001 RAL-138 490 chr2L 20303164 20303186 chr2L 20310657 20310679 blood 8 7493 0.0 8.0 4.0 1.6 7515 chr2L 20303164 intergenic not near genes chr2L 20306922 intergenic not near genes chr2L 20310679 intergenic not near genes chr2L_8_20305001 chr2L_20305001 RAL-138 491 chr2L 20310878 20310890 chr2L 20310980 20310994 8 104 5.5 5.5 5.5 1.2 116 chr2L 20310878 intergenic spir + chr2L 20310936 intergenic spir + chr2L 20310994 intergenic spir + chr2L_8_20310001 chr2L_20310001 RAL-138 492 chr2L 20320049 20320063 chr2L 20320191 20320207 7 144 5.0 4.5 4.8 1.2 158 chr2L 20320049 intron spir + chr2L 20320128 intron spir + chr2L 20320207 intron spir + chr2L_7_20320001 chr2L_20320001 RAL-138 493 chr2L 20370844 20370897 chr2L 20371069 20371121 15 224 6.5 4.0 5.2 2.4 277 chr2L 20370844 intergenic not near genes chr2L 20370982 intergenic not near genes chr2L 20371121 intergenic not near genes chr2L_15_20370001 chr2L_20370001 RAL-138 494 chr2L 20372196 20372221 chr2L 20372471 20372486 pogo 5 273 3.5 6.0 4.8 0.9 290 chr2L 20372196 intergenic Ugt37a1 - chr2L 20372341 intergenic Ugt37a1 - chr2L 20372486 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-138 495 chr2L 20372840 20372874 chr2L 20372927 20372957 11 94 4.0 2.5 3.2 2.6 117 chr2L 20372840 exon Ugt37a1 - chr2L 20372898 exon Ugt37a1 - chr2L 20372957 exon Ugt37a1 - chr2L_11_20370001 chr2L_20370001 RAL-138 496 chr2L 20424038 20424075 chr2L 20424148 20424159 5 100 2.0 8.5 5.2 0.8 121 chr2L 20424038 intron CG15130 - chr2L 20424098 intron CG15130 - chr2L 20424159 intron CG15130 - chr2L_5_20420001 chr2L_20420001 RAL-138 497 chr2L 20468374 20468393 chr2L 20468487 20468523 INE-1 9 122 5.0 1.5 3.2 2.1 149 chr2L 20468374 intron CR44980 - chr2L 20468448 intron CR44980 - chr2L 20468523 intron CR44980 - chr2L_9_20465001 chr2L_20465001 RAL-138 498 chr2L 20498675 20498708 chr2L 20498799 20498832 7 123 2.5 10.5 6.5 0.9 157 chr2L 20498675 intergenic not near genes chr2L 20498754 intergenic not near genes chr2L 20498832 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-138 499 chr2L 20568650 20568683 chr2L 20569065 20569098 X-element 5 415 1.5 5.5 3.5 1.1 448 chr2L 20568650 intron CR45347 + chr2L 20568874 intron CR45347 + chr2L 20569098 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-138 500 chr2L 20576216 20576252 chr2L 20583709 20583745 blood 8 7492 2.0 4.0 3.0 2.0 7529 chr2L 20576216 intergenic CR45347 + chr2L 20579980 intergenic not near genes chr2L 20583745 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-138 501 chr2L 20601766 20601801 chr2L 20601869 20601904 12 103 3.0 3.0 3.0 3.0 138 chr2L 20601766 intron CR44909 - chr2L 20601835 intron CR44909 - chr2L 20601904 intron CR44909 - chr2L_12_20600001 chr2L_20600001 RAL-138 502 chr2L 20623894 20623940 chr2L 20623998 20624044 12 101 6.5 2.0 4.2 2.3 150 chr2L 20623894 intron CR44909 - chr2L 20623969 intron CR44909 - chr2L 20624044 intron CR44909 - chr2L_12_20620001 chr2L_20620001 RAL-138 503 chr2L 20715545 20715577 chr2L 20715648 20715678 18 103 9.5 15.0 12.2 1.4 133 chr2L 20715545 intergenic not near genes chr2L 20715612 intergenic not near genes chr2L 20715678 intergenic not near genes chr2L_18_20715001 chr2L_20715001 RAL-138 504 chr2L 20818493 20818541 chr2L 20818599 20818644 11 106 4.5 4.0 4.2 2.1 151 chr2L 20818493 exon CheB38a - chr2L 20818568 intergenic CheB38a - chr2L 20818644 intergenic CheB38a - chr2L_11_20815001 chr2L_20815001 RAL-138 505 chr2L 20835792 20835820 chr2L 20836534 20836562 Quasimodo 5 742 3.0 2.0 2.5 1.4 770 chr2L 20835792 5` UTR Oseg5 - chr2L 20836177 intergenic Oseg5 -,Spn38F - chr2L 20836562 intergenic Spn38F - chr2L_5_20835001 chr2L_20835001 RAL-138 506 chr2L 10476061 10476096 chr2L 20875591 20875591 4 10399512 25.5 13.0 19.2 0.2 10399530 chr2L 10476061 intergenic not near genes chr2L 15675826 intron,exon,exon CG4587 -,CG43923 -,CG43924 - chr2L 20875591 intron,intron CG43739 -,sky - chr2L_4_15675001 chr2L_15675001 RAL-138 507 chr2L 20891519 20891545 chr2L 20896643 20896671 jockey 6 5126 1.5 3.0 2.2 1.9 5152 chr2L 20891519 intron,intron CG43739 -,sky - chr2L 20894095 intron,intron CG43739 -,sky - chr2L 20896671 intron,intron CG43739 -,sky - chr2L_6_20890001 chr2L_20890001 RAL-138 508 chr2L 20911037 20911060 chr2L 20911138 20911161 5 101 2.0 6.0 4.0 1.0 124 chr2L 20911037 intron,intron CG43739 -,sky - chr2L 20911099 intron,intron CG43739 -,sky - chr2L 20911161 intron,intron CG43739 -,sky - chr2L_5_20910001 chr2L_20910001 RAL-138 509 chr2L 20952630 20952679 chr2L 20952752 20952801 15 122 2.5 6.5 4.5 2.7 171 chr2L 20952630 intergenic not near genes chr2L 20952716 intergenic not near genes chr2L 20952801 intergenic not near genes chr2L_15_20950001 chr2L_20950001 RAL-138 510 chr2L 20976631 20976665 chr2L 20981471 20981505 X-element 7 4840 2.0 2.0 2.0 2.3 4874 chr2L 20976631 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981505 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-138 511 chr2L 20984718 20984767 chr2L 20984835 20984884 11 117 7.0 1.5 4.2 2.1 166 chr2L 20984718 intron CG42238 - chr2L 20984801 intron CG42238 - chr2L 20984884 intron CG42238 - chr2L_11_20980001 chr2L_20980001 RAL-138 512 chr2L 21020275 21020292 chr2L 21023951 21023993 NOF 7 3690 2.0 2.0 2.0 2.3 3718 chr2L 21020275 intron CG42238 - chr2L 21022134 intron CG42238 - chr2L 21023993 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-138 513 chr2L 21088901 21088941 chr2L 21089009 21089049 4 108 1.5 0.5 1.0 2.0 148 chr2L 21088901 intergenic ppk13 -,CG9259 + chr2L 21088975 intergenic ppk13 -,CG9259 + chr2L 21089049 intergenic ppk13 -,CG9259 + chr2L_4_21085001 chr2L_21085001 RAL-138 514 chr2L 21149029 21149074 chr2L 21149151 21149196 12 122 4.0 3.5 3.8 2.5 167 chr2L 21149029 intergenic del - chr2L 21149112 intergenic not near genes chr2L 21149196 intergenic not near genes chr2L_12_21145001 chr2L_21145001 RAL-138 515 chr2L 21377381 21377410 chr2L 21377483 21377512 8 102 2.5 3.0 2.8 2.1 131 chr2L 21377381 3` UTR CG8665 + chr2L 21377446 3` UTR CG8665 + chr2L 21377512 3` UTR CG8665 + chr2L_8_21375001 chr2L_21375001 RAL-138 516 chr2L 21597024 21597058 chr2L 21604771 21604827 roo 7 7765 1.5 3.0 2.2 2.2 7803 chr2L 21597024 intergenic not near genes chr2L 21600926 intergenic not near genes chr2L 21604827 intergenic not near genes chr2L_7_21600001 chr2L_21600001 RAL-138 517 chr2L 21691803 21691829 chr2L 21698298 21698323 Burdock 8 6495 4.0 0.0 2.0 2.7 6520 chr2L 21691803 intron CG31619 + chr2L 21695063 intron CG31619 + chr2L 21698323 intron CG31619 + chr2L_8_21695001 chr2L_21695001 RAL-138 518 chr2L 21771957 21772013 chr2L 21772061 21772117 18 104 3.0 3.5 3.2 4.3 160 chr2L 21771957 intron CG31612 - chr2L 21772037 intron CG31612 - chr2L 21772117 intron CG31612 - chr2L_18_21770001 chr2L_21770001 RAL-138 519 chr2L 21981661 21981711 chr2L 21990851 21990864 roo 9 9185 2.0 3.0 2.5 2.6 9203 chr2L 21981661 exon CG2528 - chr2L 21986262 intron CG2528 - chr2L 21990864 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-138 520 chr2L 22025805 22025848 chr2L 22025909 22025952 10 100 7.5 4.5 6.0 1.4 147 chr2L 22025805 intergenic tio + chr2L 22025878 intergenic tio + chr2L 22025952 intergenic tio + chr2L_10_22025001 chr2L_22025001 RAL-138 521 chr2L 22035182 22035236 chr2L 22035284 22035331 8 99 4.0 4.0 4.0 1.6 149 chr2L 22035182 intergenic not near genes chr2L 22035256 intergenic not near genes chr2L 22035331 intergenic not near genes chr2L_8_22035001 chr2L_22035001 RAL-138 522 chr2L 22212114 22212141 chr2L 22212686 22212712 4 572 2.0 2.0 2.0 1.3 598 chr2L 22212114 intron Ir40a - chr2L 22212413 intron Ir40a - chr2L 22212712 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-138 523 chr2L 22239406 22239426 chr2L 22239510 22239525 4 104 4.0 5.5 4.8 0.7 119 chr2L 22239406 intron CR43765 - chr2L 22239466 3` UTR CR43765 - chr2L 22239525 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-138 524 chr2L 22239429 22239459 chr2L 22239506 22239565 6 100 3.0 5.5 4.2 1.2 136 chr2L 22239429 3` UTR CR43765 - chr2L 22239497 3` UTR CR43765 - chr2L 22239565 3` UTR CR43765 - chr2L_6_22235001 chr2L_22235001 RAL-138 525 chr2L 22258595 22258645 chr2L 22260744 22260794 G6 32 2149 7.0 7.5 7.2 3.9 2199 chr2L 22258595 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260794 intergenic not near genes chr2L_32_22255001 chr2L_22255001 RAL-138 526 chr2L 22545954 22546009 chr2L 22546075 22546125 11 116 1.5 0.0 0.8 6.1 171 chr2L 22545954 intron CG17490 + chr2L 22546040 intron CG17490 + chr2L 22546125 intron CG17490 + chr2L_11_22545001 chr2L_22545001 RAL-138 527 chr2L 22674047 22674073 chr2L 22674149 22674175 5 102 3.0 2.5 2.8 1.3 128 chr2L 22674047 intron CG40006 - chr2L 22674111 intron CG40006 - chr2L 22674175 intron CG40006 - chr2L_5_22670001 chr2L_22670001 RAL-138 528 chr2L 22693896 22693949 chr2L 22694008 22694059 11 108 0.0 2.0 1.0 5.5 163 chr2L 22693896 intron CG40006 - chr2L 22693978 intron CG40006 - chr2L 22694059 intron CG40006 - chr2L_11_22690001 chr2L_22690001 RAL-138 529 chr2L 22776400 22776443 chr2L 22778214 22778257 S-element 7 1814 1.0 1.5 1.2 3.2 1857 chr2L 22776400 intergenic not near genes chr2L 22777328 intergenic not near genes chr2L 22778257 intergenic not near genes chr2L_7_22775001 chr2L_22775001 RAL-138 530 chr2R 469937 469974 chr2R 473201 473220 F-element 7 3260 2.5 4.0 3.2 1.7 3283 chr2R 469937 intergenic not near genes chr2R 471578 intergenic not near genes chr2R 473220 intergenic not near genes chr2R_7_470001 chr2R_470001 RAL-138 531 chr2R 529318 529351 chr2R 537968 537991 Max-element 11 8645 4.5 5.0 4.8 1.9 8673 chr2R 529318 intron CG40378 + chr2R 533654 intron CG40378 + chr2R 537991 intron CG40378 + chr2R_11_530001 chr2R_530001 RAL-138 532 chr2R 552759 552788 chr2R 553973 553988 1360 4 1206 12.5 13.5 13.0 0.3 1229 chr2R 552759 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553988 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-138 533 chr2R 1082365 1082371 chr2R 1087166 1087172 Doc 4 4799 4.0 2.5 3.2 1.0 4807 chr2R 1082365 intron rl + chr2R 1084768 intron rl + chr2R 1087172 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-138 534 chr2R 1516584 1516596 chr2R 1521337 1521349 1731 4 4753 7.5 3.5 5.5 0.6 4765 chr2R 1516584 exon Maf1 - chr2R 1518966 intron Maf1 - chr2R 1521349 5` UTR Maf1 - chr2R_4_1515001 chr2R_1515001 RAL-138 535 chr2R 2015115 2015153 chr2R 2015213 2015255 7 101 5.0 2.5 3.8 1.5 140 chr2R 2015115 intron CG17684 - chr2R 2015185 intron CG17684 - chr2R 2015255 intron CG17684 - chr2R_7_2015001 chr2R_2015001 RAL-138 536 chr2R 2498972 2499016 chr2R 2508143 2508188 roo 9 9172 1.0 3.0 2.0 3.0 9216 chr2R 2498972 intron MFS17 - chr2R 2503580 intron MFS17 - chr2R 2508188 intron MFS17 - chr2R_9_2500001 chr2R_2500001 RAL-138 537 chr2R 3144409 3144449 chr2R 3145003 3145006 8 588 2.5 1.0 1.8 2.9 597 chr2R 3144409 intron CG42596 + chr2R 3144708 intron CG42596 + chr2R 3145006 intron CG42596 + chr2R_8_3140001 chr2R_3140001 RAL-138 538 chr2R 3480677 3480731 chr2R 3480791 3480845 12 113 1.0 2.5 1.8 4.3 168 chr2R 3480677 intergenic not near genes chr2R 3480761 intergenic not near genes chr2R 3480845 intergenic not near genes chr2R_12_3480001 chr2R_3480001 RAL-138 539 chr2R 3877476 3877502 chr2R 3877737 3877744 7 257 4.0 6.0 5.0 1.2 268 chr2R 3877476 intergenic not near genes chr2R 3877610 intergenic not near genes chr2R 3877744 intergenic not near genes chr2R_7_3875001 chr2R_3875001 RAL-138 540 chr2R 4312935 4312981 chr2R 4313044 4313090 10 109 2.0 6.0 4.0 2.0 155 chr2R 4312935 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313090 intergenic not near genes chr2R_10_4310001 chr2R_4310001 RAL-138 541 chr2R 4621293 4621346 chr2R 4621858 4621911 7 565 0.5 3.0 1.8 2.5 618 chr2R 4621293 3` UTR CR44101 - chr2R 4621602 3` UTR CR44101 - chr2R 4621911 3` UTR CR44101 - chr2R_7_4620001 chr2R_4620001 RAL-138 542 chr2R 4622945 4622984 chr2R 4624112 4624168 1360 4 1173 2.5 3.5 3.0 1.0 1223 chr2R 4622945 intergenic CR44101 - chr2R 4623556 intergenic not near genes chr2R 4624168 intergenic not near genes chr2R_4_4620001 chr2R_4620001 RAL-138 543 chr2R 4634169 4634179 chr2R 4634248 4634283 4 98 2.0 5.5 3.8 0.8 114 chr2R 4634169 intergenic not near genes chr2R 4634226 intergenic not near genes chr2R 4634283 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-138 544 chr2R 4783392 4783449 chr2R 4783495 4783552 15 100 1.5 2.5 2.0 5.0 160 chr2R 4783392 intergenic not near genes chr2R 4783472 intergenic not near genes chr2R 4783552 intergenic not near genes chr2R_15_4780001 chr2R_4780001 RAL-138 545 chr2R 4821198 4821248 chr2R 4821309 4821340 6 108 2.0 1.0 1.5 2.4 142 chr2R 4821198 intron CG17528 - chr2R 4821269 intron CG17528 - chr2R 4821340 intron CG17528 - chr2R_6_4820001 chr2R_4820001 RAL-138 546 chr2R 4838857 4838897 chr2R 4840404 4840445 transib2 10 1548 9.0 7.0 8.0 1.1 1588 chr2R 4838857 intergenic not near genes chr2R 4839651 intergenic not near genes chr2R 4840445 intergenic not near genes chr2R_10_4835001 chr2R_4835001 RAL-138 547 chr2R 4870723 4870742 chr2R 4871259 4871278 R1A1-element 11 536 5.5 7.0 6.2 1.5 555 chr2R 4870723 intergenic not near genes chr2R 4871000 intergenic not near genes chr2R 4871278 intergenic not near genes chr2R_11_4870001 chr2R_4870001 RAL-138 548 chr2R 4916091 4916125 chr2R 4916200 4916234 7 109 3.5 4.5 4.0 1.4 143 chr2R 4916091 intergenic not near genes chr2R 4916162 intergenic not near genes chr2R 4916234 intergenic not near genes chr2R_7_4915001 chr2R_4915001 RAL-138 549 chr2R 5009115 5009174 chr2R 5009381 5009392 8 240 2.0 0.5 1.2 3.6 277 chr2R 5009115 intron Ir41a + chr2R 5009254 intron Ir41a + chr2R 5009392 intron Ir41a + chr2R_8_5005001 chr2R_5005001 RAL-138 550 chr2R 5075198 5075220 chr2R 5075351 5075373 7 153 9.5 0.0 4.8 1.2 175 chr2R 5075198 intergenic not near genes chr2R 5075286 intergenic not near genes chr2R 5075373 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-138 551 chr2R 5075243 5075366 chr2R 5075758 5075807 7 494 0.0 1.5 0.8 3.9 564 chr2R 5075243 intergenic not near genes chr2R 5075525 intergenic not near genes chr2R 5075807 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-138 552 chr2R 5080770 5080818 chr2R 5080878 5080918 6 111 0.0 1.5 0.8 3.3 148 chr2R 5080770 intergenic not near genes chr2R 5080844 intergenic not near genes chr2R 5080918 intergenic not near genes chr2R_6_5080001 chr2R_5080001 RAL-138 553 chr2R 5125222 5125268 chr2R 5125565 5125611 7 343 0.0 2.5 1.2 3.2 389 chr2R 5125222 intron gus - chr2R 5125416 intron gus - chr2R 5125611 intron gus - chr2R_7_5125001 chr2R_5125001 RAL-138 554 chr2R 5192701 5192870 chr2R 5192803 5192993 4 107 4.0 3.0 3.5 0.9 292 chr2R 5192701 intron Nipped-A - chr2R 5192847 intron Nipped-A - chr2R 5192993 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-138 555 chr2R 5363476 5363514 chr2R 5363579 5363617 6 103 3.5 2.0 2.8 1.6 141 chr2R 5363476 5` UTR CR42646 + chr2R 5363546 intron CR42646 + chr2R 5363617 intron CR42646 + chr2R_6_5360001 chr2R_5360001 RAL-138 556 chr2R 5410326 5410344 chr2R 5410505 5410524 4 180 0.0 3.0 1.5 1.6 198 chr2R 5410326 intergenic not near genes chr2R 5410425 intergenic not near genes chr2R 5410524 intergenic not near genes chr2R_4_5410001 chr2R_5410001 RAL-138 557 chr2R 5455752 5455794 chr2R 5455855 5455896 5 98 1.0 1.5 1.2 2.3 144 chr2R 5455752 3` UTR laccase2 + chr2R 5455824 3` UTR laccase2 + chr2R 5455896 3` UTR laccase2 + chr2R_5_5455001 chr2R_5455001 RAL-138 558 chr2R 5472342 5472392 chr2R 5472462 5472511 17 118 4.5 3.5 4.0 3.4 169 chr2R 5472342 intron CG30440 - chr2R 5472426 intron CG30440 - chr2R 5472511 intron CG30440 - chr2R_17_5470001 chr2R_5470001 RAL-138 559 chr2R 5750425 5750451 chr2R 5750542 5750568 6 114 5.0 4.0 4.5 1.1 143 chr2R 5750425 intergenic not near genes chr2R 5750496 intergenic not near genes chr2R 5750568 intergenic not near genes chr2R_6_5750001 chr2R_5750001 RAL-138 560 chr2R 5790450 5790477 chr2R 5790554 5790587 5 109 0.5 4.0 2.2 1.6 137 chr2R 5790450 intergenic not near genes chr2R 5790518 intergenic not near genes chr2R 5790587 intergenic not near genes chr2R_5_5790001 chr2R_5790001 RAL-138 561 chr2R 5861302 5861314 chr2R 5861416 5861460 6 129 8.0 3.5 5.8 0.9 158 chr2R 5861302 intergenic dpr12 + chr2R 5861381 intergenic not near genes chr2R 5861460 intergenic not near genes chr2R_6_5860001 chr2R_5860001 RAL-138 562 chr2R 5869255 5869304 chr2R 5874356 5874399 flea 15 5098 3.0 2.5 2.8 3.9 5144 chr2R 5869255 intergenic not near genes chr2R 5871827 intergenic not near genes chr2R 5874399 intergenic not near genes chr2R_15_5870001 chr2R_5870001 RAL-138 563 chr2R 5885350 5885375 chr2R 5885504 5885529 6 154 1.5 2.0 1.8 2.1 179 chr2R 5885350 5` UTR CR44125 + chr2R 5885440 5` UTR CR44125 + chr2R 5885529 5` UTR CR44125 + chr2R_6_5885001 chr2R_5885001 RAL-138 564 chr2R 5896086 5896092 chr2R 14757874 14757888 4 8861794 10.5 12.0 11.2 0.3 8861802 chr2R 5896086 intron CG43366 + chr2R 10326987 intron CG42732 - chr2R 14757888 intergenic CG12857 -,Trs31 - chr2R_4_10325001 chr2R_10325001 RAL-138 565 chr2R 5896994 5897037 chr2R 5897105 5897147 13 108 5.0 1.5 3.2 3.1 153 chr2R 5896994 intron CG43366 + chr2R 5897070 intron CG43366 + chr2R 5897147 intron CG43366 + chr2R_13_5895001 chr2R_5895001 RAL-138 566 chr2R 5902152 5902186 chr2R 5909732 5909770 17.6 5 7583 1.5 1.5 1.5 2.0 7618 chr2R 5902152 intron CG43366 + chr2R 5905961 intron CG43366 + chr2R 5909770 intron CG43366 + chr2R_5_5905001 chr2R_5905001 RAL-138 567 chr2R 5933772 5933820 chr2R 5933874 5933922 5 102 3.0 2.0 2.5 1.4 150 chr2R 5933772 intergenic not near genes chr2R 5933847 intergenic not near genes chr2R 5933922 intergenic not near genes chr2R_5_5930001 chr2R_5930001 RAL-138 568 chr2R 5945784 5945821 chr2R 5945902 5945939 5 118 0.0 0.5 0.2 4.2 155 chr2R 5945784 intergenic not near genes chr2R 5945862 intergenic not near genes chr2R 5945939 intergenic not near genes chr2R_5_5945001 chr2R_5945001 RAL-138 569 chr2R 5948897 5948951 chr2R 5949452 5949506 13 555 5.5 2.5 4.0 2.6 609 chr2R 5948897 intergenic not near genes chr2R 5949202 intergenic not near genes chr2R 5949506 intergenic not near genes chr2R_13_5945001 chr2R_5945001 RAL-138 570 chr2R 6033418 6033475 chr2R 6033528 6033585 14 107 5.5 4.0 4.8 2.4 167 chr2R 6033418 intron SCAP - chr2R 6033502 intron SCAP - chr2R 6033585 intron SCAP - chr2R_14_6030001 chr2R_6030001 RAL-138 571 chr2R 6088353 6088389 chr2R 6088468 6088507 13 118 2.5 6.0 4.2 2.5 154 chr2R 6088353 intergenic not near genes chr2R 6088430 intergenic not near genes chr2R 6088507 intergenic not near genes chr2R_13_6085001 chr2R_6085001 RAL-138 572 chr2R 6096694 6096744 chr2R 6101917 6101956 BS 9 5208 6.0 7.5 6.8 1.2 5262 chr2R 6096694 intron EcR - chr2R 6099325 intron EcR - chr2R 6101956 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-138 573 chr2R 6136768 6136804 chr2R 6136879 6136923 7 119 2.5 0.5 1.5 2.8 155 chr2R 6136768 intron EcR - chr2R 6136846 intron EcR - chr2R 6136923 intron EcR - chr2R_7_6135001 chr2R_6135001 RAL-138 574 chr2R 6178098 6178145 chr2R 6178249 6178296 7 151 2.0 4.0 3.0 1.8 198 chr2R 6178098 intergenic not near genes chr2R 6178197 intergenic not near genes chr2R 6178296 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-138 575 chr2R 6178656 6178713 chr2R 6178768 6178825 8 112 1.5 1.5 1.5 3.2 169 chr2R 6178656 intergenic not near genes chr2R 6178740 intergenic not near genes chr2R 6178825 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-138 576 chr2R 6236202 6236242 chr2R 6236307 6236307 19 105 14.0 0.0 7.0 2.4 105 chr2R 6236202 intron bin3 + chr2R 6236254 intron bin3 + chr2R 6236307 intron bin3 + chr2R_19_6235001 chr2R_6235001 RAL-138 577 chr2R 6247797 6247822 chr2R 6247899 6247925 8 103 4.0 1.0 2.5 2.3 128 chr2R 6247797 intron Pld + chr2R 6247861 intron Pld + chr2R 6247925 intron Pld + chr2R_8_6245001 chr2R_6245001 RAL-138 578 chr2R 6494520 6494551 chr2R 6499306 6499338 F-element 7 4784 4.0 2.0 3.0 1.8 4818 chr2R 6494520 intergenic not near genes chr2R 6496929 intergenic not near genes chr2R 6499338 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-138 579 chr2R 6500935 6500984 chr2R 6501054 6501104 18 118 7.5 10.0 8.8 1.8 169 chr2R 6500935 intergenic not near genes chr2R 6501020 intergenic not near genes chr2R 6501104 intergenic not near genes chr2R_18_6500001 chr2R_6500001 RAL-138 580 chr2R 6539797 6539854 chr2R 6539944 6539993 14 141 4.5 3.0 3.8 2.9 196 chr2R 6539797 intron jing + chr2R 6539895 intron jing + chr2R 6539993 intron jing + chr2R_14_6535001 chr2R_6535001 RAL-138 581 chr2R 6579757 6579799 chr2R 6584868 6584910 flea 7 5111 1.0 2.0 1.5 2.8 5153 chr2R 6579757 intron jing + chr2R 6582334 intron jing + chr2R 6584910 intron jing + chr2R_7_6580001 chr2R_6580001 RAL-138 582 chr2R 6597850 6597894 chr2R 6597963 6598004 13 113 5.0 6.0 5.5 2.0 154 chr2R 6597850 intron jing + chr2R 6597927 intron jing + chr2R 6598004 intron jing + chr2R_13_6595001 chr2R_6595001 RAL-138 583 chr2R 6607914 6607955 chr2R 6608041 6608082 12 127 3.0 5.5 4.2 2.3 168 chr2R 6607914 intron jing + chr2R 6607998 intron jing + chr2R 6608082 intron jing + chr2R_12_6605001 chr2R_6605001 RAL-138 584 chr2R 6664158 6664212 chr2R 6665969 6666012 S-element 20 1810 13.0 11.0 12.0 1.5 1854 chr2R 6664158 intron,3` UTR Adf1 +,CR45128 - chr2R 6665085 intron Adf1 + chr2R 6666012 intron Adf1 + chr2R_20_6665001 chr2R_6665001 RAL-138 585 chr2R 6685857 6685886 chr2R 6685964 6685993 11 107 13.5 14.0 13.8 0.7 136 chr2R 6685857 intron,intron CG9422 +,Tdc2 - chr2R 6685925 intron,intron CG9422 +,Tdc2 - chr2R 6685993 intron,intron CG9422 +,Tdc2 - chr2R_11_6685001 chr2R_6685001 RAL-138 586 chr2R 6699567 6699621 chr2R 6699677 6699731 10 110 3.5 2.0 2.8 2.6 164 chr2R 6699567 intergenic Rab2 + chr2R 6699649 intergenic Rab2 + chr2R 6699731 intergenic Rab2 +,CG3409 -,CG45092 - chr2R_10_6695001 chr2R_6695001 RAL-138 587 chr2R 6753579 6753600 chr2R 6753681 6753702 20 101 41.5 25.0 33.2 0.6 123 chr2R 6753579 intron Eb1 + chr2R 6753640 intron Eb1 + chr2R 6753702 intron Eb1 + chr2R_20_6750001 chr2R_6750001 RAL-138 588 chr2R 6757547 6757607 chr2R 6757668 6757728 35 120 7.0 6.5 6.8 4.5 181 chr2R 6757547 intergenic CG9436 -,CG3420 - chr2R 6757638 3` UTR CG9436 - chr2R 6757728 3` UTR CG9436 - chr2R_35_6755001 chr2R_6755001 RAL-138 589 chr2R 6965247 6965295 chr2R 6965352 6965406 13 101 3.0 3.0 3.0 3.2 159 chr2R 6965247 intron,intron mim -,CheB42c - chr2R 6965326 intron,intron mim -,CheB42c - chr2R 6965406 intron,intron mim -,CheB42c - chr2R_13_6965001 chr2R_6965001 RAL-138 590 chr2R 7153134 7153192 chr2R 7153245 7153303 39 107 11.0 9.5 10.2 3.5 169 chr2R 7153134 intron,exon pk +,Spn43Ab - chr2R 7153218 intron,intron pk +,Spn43Ab - chr2R 7153303 intron,intron pk +,Spn43Ab - chr2R_39_7150001 chr2R_7150001 RAL-138 591 chr2R 7196553 7196591 chr2R 7201352 7201391 F-element 24 4800 7.0 8.0 7.5 2.8 4838 chr2R 7196553 intron pk + chr2R 7198972 intron pk + chr2R 7201391 intron pk + chr2R_24_7195001 chr2R_7195001 RAL-138 592 chr2R 7209860 7209874 chr2R 7217646 7217660 roo 11 7786 1.5 14.5 8.0 1.2 7800 chr2R 7209860 intron pk + chr2R 7213760 intron pk + chr2R 7217660 intron pk + chr2R_11_7210001 chr2R_7210001 RAL-138 593 chr2R 7235796 7235849 chr2R 7240912 7240946 jockey 23 5111 4.5 7.0 5.8 3.4 5150 chr2R 7235796 intergenic not near genes chr2R 7238371 intergenic not near genes chr2R 7240946 intergenic not near genes chr2R_23_7235001 chr2R_7235001 RAL-138 594 chr2R 7262181 7262201 chr2R 7269260 7269286 297 6 7082 7.0 7.5 7.2 0.7 7105 chr2R 7262181 intergenic not near genes chr2R 7265734 intergenic not near genes chr2R 7269286 intergenic not near genes chr2R_6_7265001 chr2R_7265001 RAL-138 595 chr2R 7434874 7434910 chr2R 7439199 7439236 Juan 21 4326 10.5 17.0 13.8 1.4 4362 chr2R 7434874 intergenic so + chr2R 7437055 intergenic not near genes chr2R 7439236 intergenic not near genes chr2R_21_7435001 chr2R_7435001 RAL-138 596 chr2R 7608382 7608402 chr2R 7613610 7613628 I-element 4 5228 6.0 0.0 3.0 1.0 5246 chr2R 7608382 intron CG1358 - chr2R 7611005 intron CG1358 - chr2R 7613628 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-138 597 chr2R 7692021 7692037 chr2R 7692126 7692143 4 106 0.0 0.5 0.2 3.3 122 chr2R 7692021 intron CG1399 - chr2R 7692082 intron CG1399 - chr2R 7692143 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-138 598 chr2R 7694568 7694609 chr2R 7694677 7694718 8 106 20.5 13.5 17.0 0.4 150 chr2R 7694568 intron CG1399 - chr2R 7694643 intron CG1399 - chr2R 7694718 intron CG1399 - chr2R_8_7690001 chr2R_7690001 RAL-138 599 chr2R 7717402 7717430 chr2R 7717639 7717666 7 237 9.0 20.5 14.8 0.4 264 chr2R 7717402 intergenic not near genes chr2R 7717534 intergenic not near genes chr2R 7717666 intergenic not near genes chr2R_7_7715001 chr2R_7715001 RAL-138 600 chr2R 7737886 7737900 chr2R 7737990 7738003 6 104 28.0 26.0 27.0 0.2 117 chr2R 7737886 intergenic not near genes chr2R 7737944 intergenic not near genes chr2R 7738003 intergenic not near genes chr2R_6_7735001 chr2R_7735001 RAL-138 601 chr2R 7815647 7815701 chr2R 7822141 7822195 Burdock 22 6492 5.0 8.0 6.5 2.9 6548 chr2R 7815647 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822195 3` UTR cathD - chr2R_22_7815001 chr2R_7815001 RAL-138 602 chr2R 7849739 7849747 chr2R 7849979 7849981 4 238 15.5 5.5 10.5 0.3 242 chr2R 7849739 intron Dgk - chr2R 7849860 intron Dgk - chr2R 7849981 intron Dgk - chr2R_4_7845001 chr2R_7845001 RAL-138 603 chr2R 7869179 7869208 chr2R 7873977 7874019 Doc 4 4808 2.5 1.5 2.0 1.3 4840 chr2R 7869179 intron Dgk - chr2R 7871599 intron Dgk - chr2R 7874019 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-138 604 chr2R 7915694 7915742 chr2R 7915810 7915858 10 117 16.0 16.5 16.2 0.6 164 chr2R 7915694 intron CG12159 - chr2R 7915776 intron CG12159 - chr2R 7915858 intron CG12159 - chr2R_10_7915001 chr2R_7915001 RAL-138 605 chr2R 7997004 7997040 chr2R 7997117 7997152 10 112 32.0 36.0 34.0 0.3 148 chr2R 7997004 intron Hey - chr2R 7997078 intron Hey - chr2R 7997152 intron Hey - chr2R_10_7995001 chr2R_7995001 RAL-138 606 chr2R 8015637 8015677 chr2R 8017678 8017725 14 2046 5.0 7.0 6.0 2.0 2088 chr2R 8015637 intergenic mir-4981 + chr2R 8016681 intergenic not near genes chr2R 8017725 intergenic not near genes chr2R_14_8015001 chr2R_8015001 RAL-138 607 chr2R 8076655 8076708 chr2R 8076760 8076813 15 105 23.0 27.5 25.2 0.6 158 chr2R 8076655 intron lig + chr2R 8076734 intron lig + chr2R 8076813 intron lig + chr2R_15_8075001 chr2R_8075001 RAL-138 608 chr2R 8160910 8160941 chr2R 8161025 8161056 1360 12 113 21.5 16.0 18.8 0.6 146 chr2R 8160910 exon CG8708 - chr2R 8160983 intron CG8708 - chr2R 8161056 intron CG8708 - chr2R_12_8160001 chr2R_8160001 RAL-138 609 chr2R 8177639 8177680 chr2R 8177800 8177856 4 172 8.0 10.0 9.0 0.4 217 chr2R 8177639 intron LRP1 + chr2R 8177748 intron LRP1 + chr2R 8177856 intron LRP1 + chr2R_4_8175001 chr2R_8175001 RAL-138 610 chr2R 8203736 8203776 chr2R 8203854 8203894 13 118 14.5 15.5 15.0 0.8 158 chr2R 8203736 intron LRP1 + chr2R 8203815 intron LRP1 + chr2R 8203894 intron LRP1 + chr2R_13_8200001 chr2R_8200001 RAL-138 611 chr2R 8209027 8209084 chr2R 8209136 8209188 9 101 32.5 30.0 31.2 0.3 161 chr2R 8209027 intron LRP1 + chr2R 8209108 intron LRP1 + chr2R 8209188 intron LRP1 + chr2R_9_8205001 chr2R_8205001 RAL-138 612 chr2R 8236012 8236054 chr2R 8236118 8236159 16 105 6.0 1.5 3.8 3.3 147 chr2R 8236012 intergenic not near genes chr2R 8236086 intergenic not near genes chr2R 8236159 intergenic not near genes chr2R_16_8235001 chr2R_8235001 RAL-138 613 chr2R 8249545 8249597 chr2R 8249652 8249704 4 106 5.5 4.5 5.0 0.7 159 chr2R 8249545 5` UTR CG44439 - chr2R 8249624 intergenic CG44439 - chr2R 8249704 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-138 614 chr2R 8259548 8259586 chr2R 8259652 8259680 7 103 14.5 17.5 16.0 0.4 132 chr2R 8259548 exon CG30369 + chr2R 8259614 exon CG30369 + chr2R 8259680 3` UTR CG30369 + chr2R_7_8255001 chr2R_8255001 RAL-138 615 chr2R 8328276 8328307 chr2R 8328384 8328416 5 105 14.0 15.5 14.8 0.3 140 chr2R 8328276 intron pdm3 + chr2R 8328346 intron pdm3 + chr2R 8328416 intron pdm3 + chr2R_5_8325001 chr2R_8325001 RAL-138 616 chr2R 8330836 8330884 chr2R 8331347 8331395 roo 12 510 3.0 4.0 3.5 2.7 559 chr2R 8330836 intron pdm3 + chr2R 8331116 intron pdm3 + chr2R 8331395 intron pdm3 + chr2R_12_8330001 chr2R_8330001 RAL-138 617 chr2R 8331404 8331432 chr2R 8331516 8331544 7 112 14.0 17.0 15.5 0.4 140 chr2R 8331404 intron pdm3 + chr2R 8331474 intron pdm3 + chr2R 8331544 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-138 618 chr2R 8332676 8332713 chr2R 8332826 8332863 11 150 8.0 7.5 7.8 1.2 187 chr2R 8332676 intron pdm3 + chr2R 8332770 intron pdm3 + chr2R 8332863 intron pdm3 + chr2R_11_8330001 chr2R_8330001 RAL-138 619 chr2R 8398189 8398242 chr2R 8402994 8403046 Doc 16 4802 12.0 6.0 9.0 1.6 4857 chr2R 8398189 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403046 intron CG2121 - chr2R_16_8400001 chr2R_8400001 RAL-138 620 chr2R 8419337 8419394 chr2R 8419445 8419502 22 108 14.0 19.5 16.8 1.2 165 chr2R 8419337 intergenic not near genes chr2R 8419420 intergenic not near genes chr2R 8419502 intergenic not near genes chr2R_22_8415001 chr2R_8415001 RAL-138 621 chr2R 8429627 8429645 chr2R 8429793 8429813 4 167 7.5 19.5 13.5 0.3 186 chr2R 8429627 intergenic Lcp1 - chr2R 8429720 intergenic Lcp1 - chr2R 8429813 intergenic Lcp1 - chr2R_4_8425001 chr2R_8425001 RAL-138 622 chr2R 8483937 8483987 chr2R 8484038 8484087 17 99 2.5 4.0 3.2 4.0 150 chr2R 8483937 intron mtt - chr2R 8484012 intron mtt - chr2R 8484087 intron mtt - chr2R_17_8480001 chr2R_8480001 RAL-138 623 chr2R 8518773 8518797 chr2R 12066267 12066283 12 3547492 22.0 0.0 11.0 1.0 3547510 chr2R 8518773 intron mtt - chr2R 10292528 intron CAP + chr2R 12066283 intron CG8888 - chr2R_12_10290001 chr2R_10290001 RAL-138 624 chr2R 8524948 8524975 chr2R 8525089 8525139 6 159 10.0 11.5 10.8 0.5 191 chr2R 8524948 intron mtt - chr2R 8525044 intron mtt - chr2R 8525139 intron mtt - chr2R_6_8525001 chr2R_8525001 RAL-138 625 chr2R 8564252 8564295 chr2R 8565280 8565303 9 1025 9.5 26.0 17.8 0.5 1051 chr2R 8564252 3` UTR Cyp6a14 - chr2R 8564778 intron Cyp6a14 - chr2R 8565303 exon Cyp6a14 - chr2R_9_8560001 chr2R_8560001 RAL-138 626 chr2R 8563669 8563715 chr2R 8565945 8565992 9 2276 32.0 25.5 28.8 0.3 2323 chr2R 8563669 intergenic not near genes chr2R 8564830 exon Cyp6a14 - chr2R 8565992 5` UTR Cyp6a14 - chr2R_9_8560001 chr2R_8560001 RAL-138 627 chr2R 8566038 8566066 chr2R 8567009 8567037 1360 6 971 13.5 14.0 13.8 0.4 999 chr2R 8566038 5` UTR Cyp6a14 - chr2R 8566538 5` UTR Cyp6a14 - chr2R 8567037 5` UTR Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-138 628 chr2R 8612558 8612603 chr2R 8612659 8612705 8 102 10.0 11.0 10.5 0.7 147 chr2R 8612558 intron CG8642 - chr2R 8612632 intron CG8642 - chr2R 8612705 intron CG8642 - chr2R_8_8610001 chr2R_8610001 RAL-138 629 chr2R 8722742 8722782 chr2R 8723008 8723048 pogo 5 264 5.0 2.5 3.8 1.0 306 chr2R 8722742 intron CG14767 - chr2R 8722895 intron CG14767 - chr2R 8723048 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-138 630 chr2R 8799231 8799259 chr2R 8799408 8799428 10 169 13.0 4.0 8.5 1.1 197 chr2R 8799231 intron sns + chr2R 8799330 intron sns + chr2R 8799428 intron sns + chr2R_10_8795001 chr2R_8795001 RAL-138 631 chr2R 8799261 8799286 chr2R 8799404 8799456 11 163 4.0 4.0 4.0 2.2 195 chr2R 8799261 intron sns + chr2R 8799358 intron sns + chr2R 8799456 intron sns + chr2R_11_8795001 chr2R_8795001 RAL-138 632 chr2R 9055780 9055814 chr2R 9055884 9055911 6 104 8.0 4.0 6.0 0.9 131 chr2R 9055780 intron CG13743 - chr2R 9055846 intron CG13743 - chr2R 9055911 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-138 633 chr2R 9076114 9076166 chr2R 9076215 9076267 27 100 5.5 6.0 5.8 4.0 153 chr2R 9076114 intron ana + chr2R 9076190 intron ana + chr2R 9076267 intron ana + chr2R_27_9075001 chr2R_9075001 RAL-138 634 chr2R 9151277 9151332 chr2R 9157772 9157827 Burdock 10 6495 6.0 8.5 7.2 1.2 6550 chr2R 9151277 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157827 intergenic CG8008 - chr2R_10_9150001 chr2R_9150001 RAL-138 635 chr2R 9183108 9183147 chr2R 9183215 9183253 12 106 9.5 4.0 6.8 1.5 145 chr2R 9183108 intron ltd - chr2R 9183180 intron ltd - chr2R 9183253 intron ltd - chr2R_12_9180001 chr2R_9180001 RAL-138 636 chr2R 9191919 9191941 chr2R 9192007 9192033 9 97 5.5 5.5 5.5 1.4 114 chr2R 9191919 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191976 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192033 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_9_9190001 chr2R_9190001 RAL-138 637 chr2R 9212678 9212691 chr2R 9213182 9213202 roo 6 508 13.5 10.0 11.8 0.5 524 chr2R 9212678 intergenic CR45309 + chr2R 9212940 intergenic CR45309 + chr2R 9213202 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-138 638 chr2R 9212693 9212703 chr2R 9213181 9213206 roo 5 500 11.5 9.0 10.2 0.4 513 chr2R 9212693 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-138 639 chr2R 9227269 9227327 chr2R 9227369 9227428 22 101 5.5 4.0 4.8 3.8 159 chr2R 9227269 intergenic not near genes chr2R 9227348 intergenic hig - chr2R 9227428 intergenic hig - chr2R_22_9225001 chr2R_9225001 RAL-138 640 chr2R 9368117 9368150 chr2R 9368204 9368237 20 83 8.5 0.0 4.2 3.8 120 chr2R 9368117 intron CG13954 - chr2R 9368177 intron CG13954 - chr2R 9368237 intron CG13954 - chr2R_20_9365001 chr2R_9365001 RAL-138 641 chr2R 9480053 9480095 chr2R 9490609 9490651 roo 7 10556 1.0 4.0 2.5 2.0 10598 chr2R 9480053 intergenic not near genes chr2R 9485352 intergenic not near genes chr2R 9490651 intergenic not near genes chr2R_7_9485001 chr2R_9485001 RAL-138 642 chr2R 9510639 9510691 chr2R 9510780 9510832 14 138 7.0 3.0 5.0 2.3 193 chr2R 9510639 exon brp + chr2R 9510736 intron brp + chr2R 9510832 exon brp + chr2R_14_9510001 chr2R_9510001 RAL-138 643 chr2R 9549666 9549722 chr2R 9549770 9549789 13 85 1.0 5.0 3.0 3.2 123 chr2R 9549666 intergenic not near genes chr2R 9549728 intergenic not near genes chr2R 9549789 intergenic not near genes chr2R_13_9545001 chr2R_9545001 RAL-138 644 chr2R 9678431 9678432 chr2R 24962339 24962340 4 15283908 21.0 38.0 29.5 0.1 15283909 chr2R 9678431 intron Mmp2 - chr2R 17320386 intron mbl + chr2R 24962340 intron CG2765 - chr2R_4_17320001 chr2R_17320001 RAL-138 645 chr2R 9726618 9726640 chr2R 9734194 9734216 17.6 6 7576 2.0 2.5 2.2 1.9 7598 chr2R 9726618 intron sqa - chr2R 9730417 intron sqa - chr2R 9734216 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-138 646 chr2R 9746553 9746600 chr2R 9747861 9747908 12 1310 11.0 28.0 19.5 0.6 1355 chr2R 9746553 5` UTR sqa - chr2R 9747230 5` UTR sqa - chr2R 9747908 5` UTR sqa - chr2R_12_9745001 chr2R_9745001 RAL-138 647 chr2R 9765137 9765176 chr2R 9765242 9765255 9 98 7.5 8.5 8.0 1.0 118 chr2R 9765137 exon trpl + chr2R 9765196 exon trpl + chr2R 9765255 exon trpl + chr2R_9_9765001 chr2R_9765001 RAL-138 648 chr2R 9777516 9777569 chr2R 9777682 9777689 12 141 20.5 3.0 11.8 0.9 173 chr2R 9777516 intron CG1688 - chr2R 9777602 intron CG1688 - chr2R 9777689 intron CG1688 - chr2R_12_9775001 chr2R_9775001 RAL-138 649 chr2R 9807405 9807462 chr2R 9807573 9807629 9 168 0.0 3.0 1.5 3.6 224 chr2R 9807405 intergenic not near genes chr2R 9807517 intergenic not near genes chr2R 9807629 intergenic not near genes chr2R_9_9805001 chr2R_9805001 RAL-138 650 chr2R 9862744 9862768 chr2R 9862843 9862869 4 100 3.0 3.5 3.2 1.0 125 chr2R 9862744 intergenic not near genes chr2R 9862806 intergenic not near genes chr2R 9862869 intergenic not near genes chr2R_4_9860001 chr2R_9860001 RAL-138 651 chr2R 9950287 9950326 chr2R 9950379 9950428 7 95 3.0 3.0 3.0 1.8 141 chr2R 9950287 intron Mef2 - chr2R 9950358 intron Mef2 - chr2R 9950428 intron Mef2 - chr2R_7_9950001 chr2R_9950001 RAL-138 652 chr2R 10017626 10017678 chr2R 10017728 10017782 11 103 3.5 3.5 3.5 2.4 156 chr2R 10017626 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017782 intron Pka-R2 - chr2R_11_10015001 chr2R_10015001 RAL-138 653 chr2R 10132167 10132220 chr2R 10132270 10132304 20 103 3.0 6.0 4.5 3.6 137 chr2R 10132167 intron gem + chr2R 10132236 intron gem + chr2R 10132304 exon gem + chr2R_20_10130001 chr2R_10130001 RAL-138 654 chr2R 10168335 10168357 chr2R 10168437 10168459 6 102 4.0 2.5 3.2 1.4 124 chr2R 10168335 intron KCNQ - chr2R 10168397 intron KCNQ - chr2R 10168459 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-138 655 chr2R 10176855 10176910 chr2R 10186046 10186102 roo 10 9191 0.5 2.5 1.5 4.0 9247 chr2R 10176855 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186102 intron KCNQ - chr2R_10_10180001 chr2R_10180001 RAL-138 656 chr2R 10190449 10190469 chr2R 10190525 10190539 8 75 7.0 5.5 6.2 1.1 90 chr2R 10190449 intron KCNQ - chr2R 10190494 intron KCNQ - chr2R 10190539 intron KCNQ - chr2R_8_10190001 chr2R_10190001 RAL-138 657 chr2R 10193201 10193227 chr2R 10193310 10193336 16 109 3.5 8.5 6.0 2.3 135 chr2R 10193201 intergenic not near genes chr2R 10193268 intergenic not near genes chr2R 10193336 intergenic not near genes chr2R_16_10190001 chr2R_10190001 RAL-138 658 chr2R 10195314 10195357 chr2R 10195410 10195459 14 92 5.5 5.0 5.2 2.3 145 chr2R 10195314 intergenic not near genes chr2R 10195386 intergenic not near genes chr2R 10195459 intergenic not near genes chr2R_14_10195001 chr2R_10195001 RAL-138 659 chr2R 10200413 10200447 chr2R 10200517 10200546 14 95 16.0 6.5 11.2 1.1 133 chr2R 10200413 intergenic not near genes chr2R 10200480 intergenic not near genes chr2R 10200546 intergenic not near genes chr2R_14_10200001 chr2R_10200001 RAL-138 660 chr2R 10200448 10200469 chr2R 10200516 10200543 14 83 8.0 6.0 7.0 1.8 95 chr2R 10200448 intergenic not near genes chr2R 10200496 intergenic not near genes chr2R 10200543 intergenic not near genes chr2R_14_10200001 chr2R_10200001 RAL-138 661 chr2R 10203620 10203661 chr2R 10203730 10203771 21 109 3.5 3.0 3.2 5.0 151 chr2R 10203620 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203771 intergenic not near genes chr2R_21_10200001 chr2R_10200001 RAL-138 662 chr2R 10216163 10216222 chr2R 10216266 10216325 22 102 3.5 5.0 4.2 4.2 162 chr2R 10216163 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216325 intron,intron CG12912 -,Hr46 - chr2R_22_10215001 chr2R_10215001 RAL-138 663 chr2R 10225707 10225744 chr2R 10225814 10225851 25 107 5.5 4.0 4.8 4.3 144 chr2R 10225707 intron,intron CG12912 -,Hr46 - chr2R 10225779 intron,intron CG12912 -,Hr46 - chr2R 10225851 intron,intron CG12912 -,Hr46 - chr2R_25_10225001 chr2R_10225001 RAL-138 664 chr2R 10269548 10269596 chr2R 10269664 10269715 21 116 5.0 6.0 5.5 3.2 167 chr2R 10269548 intron CAP + chr2R 10269632 intron CAP + chr2R 10269715 intron CAP + chr2R_21_10265001 chr2R_10265001 RAL-138 665 chr2R 10274799 10274823 chr2R 10274900 10274924 8 100 3.5 0.0 1.8 2.9 125 chr2R 10274799 intron CAP + chr2R 10274862 intron CAP + chr2R 10274924 intron CAP + chr2R_8_10270001 chr2R_10270001 RAL-138 666 chr2R 10300624 10300633 chr2R 10300745 10300754 10 121 0.5 2.5 1.5 4.0 130 chr2R 10300624 intron CAP + chr2R 10300689 intron CAP + chr2R 10300754 intron CAP + chr2R_10_10300001 chr2R_10300001 RAL-138 667 chr2R 10300634 10300673 chr2R 10300740 10300794 18 119 0.0 2.5 1.2 8.2 160 chr2R 10300634 intron CAP + chr2R 10300714 intron CAP + chr2R 10300794 intron CAP + chr2R_18_10300001 chr2R_10300001 RAL-138 668 chr2R 10318492 10318525 chr2R 10318602 10318636 25 111 5.5 6.0 5.8 3.7 144 chr2R 10318492 intron Ndg + chr2R 10318564 intron Ndg + chr2R 10318636 intron Ndg + chr2R_25_10315001 chr2R_10315001 RAL-138 669 chr2R 10350917 10350923 chr2R 10350991 10351032 4 99 6.0 6.5 6.2 0.6 115 chr2R 10350917 intron CG42732 - chr2R 10350974 intron CG42732 - chr2R 10351032 intron CG42732 - chr2R_4_10350001 chr2R_10350001 RAL-138 670 chr2R 10350924 10350932 chr2R 10350985 10351041 6 100 5.0 6.5 5.8 0.9 117 chr2R 10350924 intron CG42732 - chr2R 10350982 intron CG42732 - chr2R 10351041 intron CG42732 - chr2R_6_10350001 chr2R_10350001 RAL-138 671 chr2R 10352652 10352705 chr2R 10352753 10352807 29 100 8.0 8.0 8.0 3.2 155 chr2R 10352652 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352730 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352807 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_29_10350001 chr2R_10350001 RAL-138 672 chr2R 10409041 10409047 chr2R 10409143 10409147 4 102 0.0 8.0 4.0 0.8 106 chr2R 10409041 intron CG42732 - chr2R 10409094 intron CG42732 - chr2R 10409147 intron CG42732 - chr2R_4_10405001 chr2R_10405001 RAL-138 673 chr2R 10409070 10409076 chr2R 10409171 10409177 5 101 0.0 12.0 6.0 0.7 107 chr2R 10409070 intron CG42732 - chr2R 10409124 intron CG42732 - chr2R 10409177 intron,exon CG42732 -,CG33477 - chr2R_5_10405001 chr2R_10405001 RAL-138 674 chr2R 10411779 10411837 chr2R 10411886 10411944 25 107 3.5 8.0 5.8 3.7 165 chr2R 10411779 intron CG42732 - chr2R 10411862 intron CG42732 - chr2R 10411944 intron CG42732 - chr2R_25_10410001 chr2R_10410001 RAL-138 675 chr2R 10454072 10454130 chr2R 10454173 10454232 18 98 6.5 7.5 7.0 2.2 160 chr2R 10454072 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454232 intron,intron Galphao +,Cyp49a1 - chr2R_18_10450001 chr2R_10450001 RAL-138 676 chr2R 10469010 10469053 chr2R 10469151 10469194 18 139 6.0 7.0 6.5 2.4 184 chr2R 10469010 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469194 intron CG11777 + chr2R_18_10465001 chr2R_10465001 RAL-138 677 chr2R 10492299 10492352 chr2R 10492411 10492450 20 106 7.5 8.0 7.8 2.3 151 chr2R 10492299 intron lola - chr2R 10492374 intron lola - chr2R 10492450 intron lola - chr2R_20_10490001 chr2R_10490001 RAL-138 678 chr2R 10551167 10551180 chr2R 10551311 10551324 4 144 0.0 3.5 1.8 1.4 157 chr2R 10551167 intergenic not near genes chr2R 10551246 intergenic not near genes chr2R 10551324 intergenic not near genes chr2R_4_10550001 chr2R_10550001 RAL-138 679 chr2R 10562975 10563239 chr2R 10563078 10563362 9 103 0.0 0.0 0.0 9.0 387 chr2R 10562975 intron psq + chr2R 10563168 intron psq + chr2R 10563362 intron psq + chr2R_9_10560001 chr2R_10560001 RAL-138 680 chr2R 10574625 10574639 chr2R 10574731 10574746 5 107 2.5 4.0 3.2 1.2 121 chr2R 10574625 intron psq + chr2R 10574686 intron psq + chr2R 10574746 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-138 681 chr2R 10622330 10622364 chr2R 10637120 10637139 mdg1 12 14786 8.0 0.0 4.0 2.4 14809 chr2R 10622330 intron CG11883 + chr2R 10629734 intron CG11883 + chr2R 10637139 intron CG11883 + chr2R_12_10625001 chr2R_10625001 RAL-138 682 chr2R 10650867 10650914 chr2R 10650994 10651041 7 126 3.5 2.5 3.0 1.8 174 chr2R 10650867 intergenic not near genes chr2R 10650954 intergenic not near genes chr2R 10651041 intergenic not near genes chr2R_7_10650001 chr2R_10650001 RAL-138 683 chr2R 10684277 10684304 chr2R 10684407 10684436 5 132 3.5 1.5 2.5 1.4 159 chr2R 10684277 intron stan + chr2R 10684356 intron stan + chr2R 10684436 intron stan + chr2R_5_10680001 chr2R_10680001 RAL-138 684 chr2R 10781394 10781423 chr2R 10781759 10781807 8 376 3.5 2.5 3.0 2.0 413 chr2R 10781394 intron CG33144 - chr2R 10781600 intron CG33144 - chr2R 10781807 intron CG33144 - chr2R_8_10780001 chr2R_10780001 RAL-138 685 chr2R 10813171 10813187 chr2R 10813249 10813297 9 100 4.5 5.0 4.8 1.6 126 chr2R 10813171 5` UTR CG12341 - chr2R 10813234 5` UTR CG12341 - chr2R 10813297 5` UTR CG12341 - chr2R_9_10810001 chr2R_10810001 RAL-138 686 chr2R 10848300 10848315 chr2R 10848425 10848441 5 124 10.0 3.5 6.8 0.6 141 chr2R 10848300 intron CG30015 - chr2R 10848370 intron CG30015 - chr2R 10848441 intron CG30015 - chr2R_5_10845001 chr2R_10845001 RAL-138 687 chr2R 10959068 10959107 chr2R 10959172 10959181 6 99 0.5 1.5 1.0 3.0 113 chr2R 10959068 intergenic not near genes chr2R 10959124 intergenic not near genes chr2R 10959181 intergenic not near genes chr2R_6_10955001 chr2R_10955001 RAL-138 688 chr2R 10979632 10979648 chr2R 10980127 10980143 297 5 495 7.0 7.0 7.0 0.6 511 chr2R 10979632 intergenic not near genes chr2R 10979888 intergenic not near genes chr2R 10980143 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-138 689 chr2R 11009797 11009846 chr2R 11018996 11019045 roo 9 9194 4.0 3.0 3.5 2.0 9248 chr2R 11009797 intron luna - chr2R 11014421 intron luna - chr2R 11019045 intron luna - chr2R_9_11010001 chr2R_11010001 RAL-138 690 chr2R 11019860 11019889 chr2R 11024942 11024980 jockey 4 5081 3.0 1.0 2.0 1.3 5120 chr2R 11019860 intron luna - chr2R 11022420 intron luna - chr2R 11024980 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-138 691 chr2R 11154192 11154234 chr2R 11154336 11154378 7 144 1.5 1.0 1.2 3.2 186 chr2R 11154192 intron CG13229 - chr2R 11154285 intron CG13229 - chr2R 11154378 intron CG13229 - chr2R_7_11150001 chr2R_11150001 RAL-138 692 chr2R 11179257 11179285 chr2R 11179368 11179395 7 111 3.5 5.5 4.5 1.3 138 chr2R 11179257 intron shn + chr2R 11179326 intron shn + chr2R 11179395 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-138 693 chr2R 11194767 11194784 chr2R 11194900 11194916 5 133 4.0 8.5 6.2 0.7 149 chr2R 11194767 intron shn + chr2R 11194842 intron shn + chr2R 11194916 intron shn + chr2R_5_11190001 chr2R_11190001 RAL-138 694 chr2R 11207810 11207844 chr2R 11208011 11208062 BS 8 214 6.5 6.0 6.2 1.1 252 chr2R 11207810 intron shn + chr2R 11207936 intron shn + chr2R 11208062 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-138 695 chr2R 11231716 11231762 chr2R 11231834 11231851 7 112 1.5 4.0 2.8 1.8 135 chr2R 11231716 intron metro - chr2R 11231784 intron metro - chr2R 11231851 intron metro - chr2R_7_11230001 chr2R_11230001 RAL-138 696 chr2R 11276797 11276819 chr2R 11276975 11277012 6 184 1.0 3.5 2.2 1.9 215 chr2R 11276797 intergenic not near genes chr2R 11276904 intergenic not near genes chr2R 11277012 intergenic not near genes chr2R_6_11275001 chr2R_11275001 RAL-138 697 chr2R 11297614 11297632 chr2R 11301963 11301981 flea 6 4349 5.0 0.0 2.5 1.7 4367 chr2R 11297614 intergenic CG42336 - chr2R 11299798 intergenic not near genes chr2R 11301981 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-138 698 chr2R 11324029 11324033 chr2R 11324118 11324131 4 100 5.5 3.0 4.2 0.8 102 chr2R 11324029 intergenic sha + chr2R 11324080 intergenic sha + chr2R 11324131 intergenic sha + chr2R_4_11320001 chr2R_11320001 RAL-138 699 chr2R 11344150 11344181 chr2R 11344271 11344296 6 120 0.0 11.0 5.5 0.9 146 chr2R 11344150 intergenic alphaTry - chr2R 11344223 intergenic alphaTry - chr2R 11344296 3` UTR alphaTry - chr2R_6_11340001 chr2R_11340001 RAL-138 700 chr2R 11368004 11368035 chr2R 11368105 11368136 14 101 10.0 3.0 6.5 1.9 132 chr2R 11368004 intron CG13204 + chr2R 11368070 intron CG13204 + chr2R 11368136 intron CG13204 + chr2R_14_11365001 chr2R_11365001 RAL-138 701 chr2R 11415496 11415546 chr2R 11418670 11418694 opus 8 3170 1.0 2.0 1.5 3.2 3198 chr2R 11415496 intron Drip - chr2R 11417095 intron Drip - chr2R 11418694 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-138 702 chr2R 11472625 11472680 chr2R 11473846 11473901 pogo 29 1221 3.5 3.5 3.5 6.4 1276 chr2R 11472625 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473901 intergenic not near genes chr2R_29_11470001 chr2R_11470001 RAL-138 703 chr2R 11480787 11480827 chr2R 11480895 11480935 6 108 0.0 1.0 0.5 4.0 148 chr2R 11480787 intron inv + chr2R 11480861 intron inv + chr2R 11480935 intron inv + chr2R_6_11480001 chr2R_11480001 RAL-138 704 chr2R 11494287 11494339 chr2R 11494395 11494447 9 108 0.0 0.5 0.2 7.5 160 chr2R 11494287 intron inv + chr2R 11494367 intron inv + chr2R 11494447 intron inv + chr2R_9_11490001 chr2R_11490001 RAL-138 705 chr2R 11724132 11724190 chr2R 11724240 11724298 10 108 2.5 6.0 4.2 1.9 166 chr2R 11724132 intron pyr + chr2R 11724215 intron pyr + chr2R 11724298 exon pyr + chr2R_10_11720001 chr2R_11720001 RAL-138 706 chr2R 11728257 11728290 chr2R 11728352 11728391 6 92 6.5 4.0 5.2 1.0 134 chr2R 11728257 intergenic not near genes chr2R 11728324 intergenic not near genes chr2R 11728391 intergenic not near genes chr2R_6_11725001 chr2R_11725001 RAL-138 707 chr2R 11826859 11826919 chr2R 11826996 11827056 10 137 7.5 3.5 5.5 1.5 197 chr2R 11826859 3` UTR CG13192 + chr2R 11826958 3` UTR CG13192 + chr2R 11827056 3` UTR CG13192 + chr2R_10_11825001 chr2R_11825001 RAL-138 708 chr2R 11863837 11863884 chr2R 11863948 11863996 17 111 7.5 7.5 7.5 2.0 159 chr2R 11863837 intergenic CG42531 + chr2R 11863916 intergenic CG42531 + chr2R 11863996 intergenic CG42531 + chr2R_17_11860001 chr2R_11860001 RAL-138 709 chr2R 12044336 12044376 chr2R 12044446 12044486 6 110 1.5 5.0 3.2 1.4 150 chr2R 12044336 intergenic Drep-1 + chr2R 12044411 intergenic Drep-1 + chr2R 12044486 intergenic Drep-1 + chr2R_6_12040001 chr2R_12040001 RAL-138 710 chr2R 8518786 8518963 chr2R 12066173 12066286 6 3547381 22.0 39.5 30.8 0.2 3547500 chr2R 8518786 intron mtt - chr2R 10292536 intron CAP + chr2R 12066286 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-138 711 chr2R 12093937 12093953 chr2R 12094075 12094091 5 138 4.0 6.5 5.2 0.8 154 chr2R 12093937 intron jeb - chr2R 12094014 intron jeb - chr2R 12094091 intron jeb - chr2R_5_12090001 chr2R_12090001 RAL-138 712 chr2R 12146445 12146502 chr2R 12147592 12147647 24 1140 75.0 80.5 77.8 0.3 1202 chr2R 12146445 intron,3` UTR Hen1 +,CG8878 - chr2R 12147046 intron,exon Hen1 +,CG8878 - chr2R 12147647 intron,exon Hen1 +,CG8878 - chr2R_24_12145001 chr2R_12145001 RAL-138 713 chr2R 12145909 12145956 chr2R 12148597 12148640 25 2678 58.0 88.5 73.2 0.3 2731 chr2R 12145909 exon Hen1 + chr2R 12147274 intron,intron Hen1 +,CG8878 - chr2R 12148640 intron,exon Hen1 +,CG8878 - chr2R_25_12145001 chr2R_12145001 RAL-138 714 chr2R 12178899 12178913 chr2R 12179003 12179004 7 103 4.5 6.0 5.2 1.1 105 chr2R 12178899 intergenic CR45264 +,EndoG - chr2R 12178952 intergenic CR45264 +,EndoG - chr2R 12179004 intergenic CR45264 +,EndoG -,CG8860 - chr2R_7_12175001 chr2R_12175001 RAL-138 715 chr2R 12185977 12186023 chr2R 12186097 12186143 14 118 7.0 5.5 6.2 1.9 166 chr2R 12185977 intron Cyp6g1 + chr2R 12186060 intron Cyp6g1 + chr2R 12186143 intron Cyp6g1 + chr2R_14_12185001 chr2R_12185001 RAL-138 716 chr2R 12185221 12185223 chr2R 12188122 12188143 8 2903 31.5 177.0 104.2 0.1 2922 chr2R 12185221 3` UTR,exon CG13175 +,CG33964 + chr2R 12186682 exon Cyp6g1 + chr2R 12188143 3` UTR Cyp6g1 + chr2R_8_12185001 chr2R_12185001 RAL-138 717 chr2R 12187477 12187504 chr2R 12190068 12190099 34 2596 178.0 153.5 165.8 0.2 2622 chr2R 12187477 exon Cyp6g1 + chr2R 12188788 exon Cyp6g2 - chr2R 12190099 exon Cyp6g2 - chr2R_34_12185001 chr2R_12185001 RAL-138 718 chr2R 12187473 12187521 chr2R 12190100 12190124 52 2608 200.5 120.5 160.5 0.3 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_52_12185001 chr2R_12185001 RAL-138 719 chr2R 12279036 12279045 chr2R 12279174 12279183 7 138 10.5 6.5 8.5 0.7 147 chr2R 12279036 intergenic Cam + chr2R 12279110 intergenic Cam + chr2R 12279183 intergenic Cam + chr2R_7_12275001 chr2R_12275001 RAL-138 720 chr2R 12301857 12301879 chr2R 12301957 12301981 8 98 7.0 5.5 6.2 1.1 124 chr2R 12301857 intron CG8850 - chr2R 12301919 intron CG8850 - chr2R 12301981 intron CG8850 - chr2R_8_12300001 chr2R_12300001 RAL-138 721 chr2R 12301880 12301907 chr2R 12301955 12301996 15 87 3.0 5.0 4.0 3.0 116 chr2R 12301880 intron CG8850 - chr2R 12301938 intron CG8850 - chr2R 12301996 intron CG8850 - chr2R_15_12300001 chr2R_12300001 RAL-138 722 chr2R 12481139 12481169 chr2R 12482941 12482963 roo 24 1808 13.5 14.0 13.8 1.6 1824 chr2R 12481139 exon Dh44-R2 + chr2R 12482051 intron Dh44-R2 + chr2R 12482963 intron Dh44-R2 + chr2R_24_12480001 chr2R_12480001 RAL-138 723 chr2R 12501675 12501683 chr2R 12503861 12503869 Rt1c 7 2185 18.0 13.0 15.5 0.4 2194 chr2R 12501675 intron fdl - chr2R 12502772 intron fdl - chr2R 12503869 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-138 724 chr2R 12501684 12501722 chr2R 12503856 12503894 Rt1c 22 2179 6.5 11.5 9.0 2.2 2210 chr2R 12501684 intron fdl - chr2R 12502789 intron fdl - chr2R 12503894 intron fdl - chr2R_22_12500001 chr2R_12500001 RAL-138 725 chr2R 12602782 12602837 chr2R 12602891 12602946 7 109 2.0 1.5 1.8 2.5 164 chr2R 12602782 intron Amph + chr2R 12602864 intron Amph + chr2R 12602946 intron Amph + chr2R_7_12600001 chr2R_12600001 RAL-138 726 chr2R 12707497 12707542 chr2R 12715888 12715933 roo 6 8391 0.5 1.0 0.8 3.3 8436 chr2R 12707497 intron CG42663 + chr2R 12711715 intron CG42663 + chr2R 12715933 intron CG42663 + chr2R_6_12710001 chr2R_12710001 RAL-138 727 chr2R 12789302 12789319 chr2R 12797661 12797707 roo 7 8372 4.0 4.0 4.0 1.4 8405 chr2R 12789302 intron,3` UTR sca +,CR45137 - chr2R 12793504 intron,intron sca +,CR45137 - chr2R 12797707 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-138 728 chr2R 12819424 12819474 chr2R 12824526 12824536 jockey 10 5096 3.5 4.5 4.0 2.0 5112 chr2R 12819424 intergenic not near genes chr2R 12821980 intergenic not near genes chr2R 12824536 intergenic not near genes chr2R_10_12820001 chr2R_12820001 RAL-138 729 chr2R 12897460 12897476 chr2R 12897576 12897592 18 116 1.0 0.0 0.5 12.0 132 chr2R 12897460 intron vg + chr2R 12897526 intron vg + chr2R 12897592 intron vg + chr2R_18_12895001 chr2R_12895001 RAL-138 730 chr2R 12950097 12950143 chr2R 12950205 12950251 16 108 9.0 0.5 4.8 2.8 154 chr2R 12950097 intron CG44251 - chr2R 12950174 intron CG44251 - chr2R 12950251 intron CG44251 - chr2R_16_12950001 chr2R_12950001 RAL-138 731 chr2R 12973411 12973448 chr2R 12973523 12973560 11 112 5.5 5.0 5.2 1.8 149 chr2R 12973411 intron Psc - chr2R 12973486 intron Psc - chr2R 12973560 intron Psc - chr2R_11_12970001 chr2R_12970001 RAL-138 732 chr2R 13054598 13054644 chr2R 13054826 13054866 8 227 0.0 2.5 1.2 3.6 268 chr2R 13054598 intergenic not near genes chr2R 13054732 intergenic not near genes chr2R 13054866 intergenic Drl-2 - chr2R_8_13050001 chr2R_13050001 RAL-138 733 chr2R 13136824 13136863 chr2R 13141643 13141686 Doc 22 4822 15.0 10.0 12.5 1.6 4862 chr2R 13136824 exon Cap-G + chr2R 13139255 intron Cap-G + chr2R 13141686 intron Cap-G + chr2R_22_13135001 chr2R_13135001 RAL-138 734 chr2R 13194830 13194852 chr2R 13194946 13194974 4 116 17.0 11.5 14.2 0.3 144 chr2R 13194830 intergenic not near genes chr2R 13194902 intergenic not near genes chr2R 13194974 intergenic not near genes chr2R_4_13190001 chr2R_13190001 RAL-138 735 chr2R 13309648 13309683 chr2R 13309791 13309825 12 142 3.5 4.0 3.8 2.5 177 chr2R 13309648 intergenic not near genes chr2R 13309736 intergenic not near genes chr2R 13309825 intergenic not near genes chr2R_12_13305001 chr2R_13305001 RAL-138 736 chr2R 13364682 13364732 chr2R 13364793 13364843 25 111 4.0 6.5 5.2 4.0 161 chr2R 13364682 intergenic not near genes chr2R 13364762 intergenic not near genes chr2R 13364843 intergenic not near genes chr2R_25_13360001 chr2R_13360001 RAL-138 737 chr2R 13403900 13403934 chr2R 13404010 13404044 4 110 1.0 1.0 1.0 2.0 144 chr2R 13403900 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404044 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-138 738 chr2R 13431471 13431503 chr2R 13431575 13431606 5 104 1.5 0.0 0.8 2.8 135 chr2R 13431471 intron CG42321 - chr2R 13431538 intron CG42321 - chr2R 13431606 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-138 739 chr2R 13574373 13574431 chr2R 13574479 13574537 17 106 3.5 6.5 5.0 2.8 164 chr2R 13574373 intergenic CG42808 - chr2R 13574455 intergenic CG42808 -,CR44365 + chr2R 13574537 intergenic CG42808 -,CR44365 + chr2R_17_13570001 chr2R_13570001 RAL-138 740 chr2R 13580478 13580524 chr2R 13580853 13580898 jockey 19 373 8.0 6.5 7.2 2.3 420 chr2R 13580478 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580898 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_19_13580001 chr2R_13580001 RAL-138 741 chr2R 13631272 13631311 chr2R 13631480 13631519 10 201 1.5 2.0 1.8 3.6 247 chr2R 13631272 intron fas + chr2R 13631396 intron fas + chr2R 13631519 intron fas + chr2R_10_13630001 chr2R_13630001 RAL-138 742 chr2R 13632296 13632309 chr2R 13632406 13632422 6 112 16.5 9.0 12.8 0.4 126 chr2R 13632296 intron fas + chr2R 13632359 intron fas + chr2R 13632422 intron fas + chr2R_6_13630001 chr2R_13630001 RAL-138 743 chr2R 13684239 13684271 chr2R 13684342 13684373 4 103 3.0 1.0 2.0 1.3 134 chr2R 13684239 intron fas + chr2R 13684306 intron fas + chr2R 13684373 intron fas + chr2R_4_13680001 chr2R_13680001 RAL-138 744 chr2R 13728112 13728139 chr2R 13735798 13735825 opus 4 7686 4.0 4.0 4.0 0.8 7713 chr2R 13728112 intron fas + chr2R 13731968 intron fas + chr2R 13735825 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-138 745 chr2R 13793121 13793131 chr2R 13793222 13793227 4 99 10.0 4.0 7.0 0.5 106 chr2R 13793121 intergenic not near genes chr2R 13793174 intergenic not near genes chr2R 13793227 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-138 746 chr2R 13793138 13793150 chr2R 13793234 13793250 4 100 8.0 6.0 7.0 0.5 112 chr2R 13793138 intergenic not near genes chr2R 13793194 intergenic not near genes chr2R 13793250 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-138 747 chr2R 13793155 13793160 chr2R 13793224 13793259 4 92 6.5 4.5 5.5 0.6 104 chr2R 13793155 intergenic not near genes chr2R 13793207 intergenic not near genes chr2R 13793259 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-138 748 chr2R 13817672 13817693 chr2R 13817779 13817788 13 105 4.0 6.0 5.0 2.2 116 chr2R 13817672 intron stj + chr2R 13817730 intron stj + chr2R 13817788 intron stj + chr2R_13_13815001 chr2R_13815001 RAL-138 749 chr2R 13854924 13854980 chr2R 13855234 13855290 30 308 4.5 13.0 8.8 3.1 366 chr2R 13854924 intron,5` UTR CG6553 -,CR44367 + chr2R 13855107 exon,5` UTR CG6553 -,CR44367 + chr2R 13855290 exon,5` UTR CG6553 -,CR44367 + chr2R_30_13855001 chr2R_13855001 RAL-138 750 chr2R 13905585 13905636 chr2R 13907591 13907612 Rt1a 16 1993 8.5 9.0 8.8 1.6 2027 chr2R 13905585 intron shot - chr2R 13906598 intron shot - chr2R 13907612 intron shot - chr2R_16_13905001 chr2R_13905001 RAL-138 751 chr2R 13925832 13925868 chr2R 13926032 13926069 7 201 4.5 5.5 5.0 1.2 237 chr2R 13925832 intron shot - chr2R 13925950 intron shot - chr2R 13926069 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-138 752 chr2R 14018136 14018184 chr2R 14018245 14018293 7 109 2.5 2.5 2.5 2.0 157 chr2R 14018136 intron mam + chr2R 14018214 intron mam + chr2R 14018293 intron mam + chr2R_7_14015001 chr2R_14015001 RAL-138 753 chr2R 14037268 14037289 chr2R 14037376 14037397 6 108 0.0 9.0 4.5 1.1 129 chr2R 14037268 intron mam + chr2R 14037332 intron mam + chr2R 14037397 intron mam + chr2R_6_14035001 chr2R_14035001 RAL-138 754 chr2R 14277557 14277573 chr2R 14277664 14277679 7 107 16.0 4.0 10.0 0.6 122 chr2R 14277557 5` UTR Ih + chr2R 14277618 5` UTR Ih + chr2R 14277679 5` UTR Ih + chr2R_7_14275001 chr2R_14275001 RAL-138 755 chr2R 14277580 14277587 chr2R 14277684 14277694 6 106 12.0 8.0 10.0 0.5 114 chr2R 14277580 5` UTR Ih + chr2R 14277637 5` UTR Ih + chr2R 14277694 5` UTR Ih + chr2R_6_14275001 chr2R_14275001 RAL-138 756 chr2R 14277607 14277609 chr2R 14277714 14277714 4 106 4.5 13.5 9.0 0.4 107 chr2R 14277607 5` UTR Ih + chr2R 14277660 5` UTR Ih + chr2R 14277714 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-138 757 chr2R 14284922 14284941 chr2R 14285020 14285042 8 101 13.0 15.0 14.0 0.5 120 chr2R 14284922 intron Ih + chr2R 14284982 intron Ih + chr2R 14285042 intron Ih + chr2R_8_14280001 chr2R_14280001 RAL-138 758 chr2R 14289784 14289839 chr2R 14289927 14289982 25 142 6.0 8.0 7.0 3.1 198 chr2R 14289784 intron Ih + chr2R 14289883 intron Ih + chr2R 14289982 intron Ih + chr2R_25_14285001 chr2R_14285001 RAL-138 759 chr2R 14306089 14306126 chr2R 14306190 14306227 5 101 0.5 3.0 1.8 1.8 138 chr2R 14306089 intergenic not near genes chr2R 14306158 intergenic not near genes chr2R 14306227 intergenic not near genes chr2R_5_14305001 chr2R_14305001 RAL-138 760 chr2R 14357531 14357576 chr2R 14357646 14357691 15 112 9.0 10.5 9.8 1.4 160 chr2R 14357531 intergenic CG8617 -,Arc1 - chr2R 14357611 intergenic Arc1 -,CG8617 - chr2R 14357691 intergenic Arc1 -,CG8617 - chr2R_15_14355001 chr2R_14355001 RAL-138 761 chr2R 14405533 14405576 chr2R 14405895 14405938 8 360 3.0 2.5 2.8 2.1 405 chr2R 14405533 intergenic not near genes chr2R 14405736 intergenic not near genes chr2R 14405938 intergenic not near genes chr2R_8_14405001 chr2R_14405001 RAL-138 762 chr2R 14467284 14467324 chr2R 14476467 14476507 roo 9 9182 3.0 5.0 4.0 1.8 9223 chr2R 14467284 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476507 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-138 763 chr2R 14497375 14497419 chr2R 14498566 14498610 1360 14 1191 4.5 5.5 5.0 2.3 1235 chr2R 14497375 3` UTR Cpsf160 - chr2R 14497992 intron Cpsf160 - chr2R 14498610 3` UTR Cpsf160 - chr2R_14_14495001 chr2R_14495001 RAL-138 764 chr2R 14538938 14538968 chr2R 14539039 14539069 5 99 6.0 8.5 7.2 0.6 131 chr2R 14538938 intron ttv + chr2R 14539004 intron ttv + chr2R 14539069 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-138 765 chr2R 14538974 14538982 chr2R 14539034 14539077 4 84 4.5 8.5 6.5 0.5 103 chr2R 14538974 intron ttv + chr2R 14539026 intron ttv + chr2R 14539077 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-138 766 chr2R 14542735 14542790 chr2R 14542854 14542912 13 120 6.0 5.5 5.8 1.9 177 chr2R 14542735 intron ttv + chr2R 14542824 intron ttv + chr2R 14542912 intron ttv + chr2R_13_14540001 chr2R_14540001 RAL-138 767 chr2R 14623877 14623901 chr2R 14623996 14624022 6 120 1.0 5.5 3.2 1.4 145 chr2R 14623877 intron Uhg5 + chr2R 14623950 5` UTR Uhg5 + chr2R 14624022 intron,5` UTR Uhg5 +,snoRNA:Me28S-G2703c + chr2R_6_14620001 chr2R_14620001 RAL-138 768 chr2R 14699424 14699450 chr2R 14699832 14699857 4 404 8.5 1.5 5.0 0.7 433 chr2R 14699424 intron mspo - chr2R 14699640 intron mspo - chr2R 14699857 intron mspo - chr2R_4_14695001 chr2R_14695001 RAL-138 769 chr2R 14729935 14729959 chr2R 14730044 14730068 5 108 4.5 2.0 3.2 1.2 133 chr2R 14729935 intergenic not near genes chr2R 14730002 intergenic not near genes chr2R 14730068 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-138 770 chr2R 14777481 14777531 chr2R 14777705 14777755 21 223 4.0 6.5 5.2 3.4 274 chr2R 14777481 intron kn - chr2R 14777618 intron kn - chr2R 14777755 intron kn - chr2R_21_14775001 chr2R_14775001 RAL-138 771 chr2R 14796326 14796361 chr2R 14796448 14796483 10 122 6.5 3.5 5.0 1.7 157 chr2R 14796326 intron kn - chr2R 14796404 intron kn - chr2R 14796483 intron kn - chr2R_10_14795001 chr2R_14795001 RAL-138 772 chr2R 14803452 14803505 chr2R 14803557 14803610 6 105 0.0 2.0 1.0 3.0 158 chr2R 14803452 intron kn - chr2R 14803531 intron kn - chr2R 14803610 intron kn - chr2R_6_14800001 chr2R_14800001 RAL-138 773 chr2R 14889189 14889211 chr2R 14897822 14897844 Max-element 8 8633 6.0 0.0 3.0 2.0 8655 chr2R 14889189 intergenic Cyp6a8 - chr2R 14893516 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_8_14890001 chr2R_14890001 RAL-138 774 chr2R 14911675 14911726 chr2R 14911823 14911874 37 147 8.0 5.5 6.8 4.7 199 chr2R 14911675 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911874 intron CG10249 - chr2R_37_14910001 chr2R_14910001 RAL-138 775 chr2R 14916536 14916547 chr2R 14916641 14916652 4 104 5.0 3.0 4.0 0.8 116 chr2R 14916536 intron CG10249 - chr2R 14916594 intron CG10249 - chr2R 14916652 intron CG10249 - chr2R_4_14915001 chr2R_14915001 RAL-138 776 chr2R 14955654 14955676 chr2R 14955768 14955790 6 114 5.5 5.0 5.2 1.0 136 chr2R 14955654 intron aPKC - chr2R 14955722 intron aPKC - chr2R 14955790 intron aPKC - chr2R_6_14955001 chr2R_14955001 RAL-138 777 chr2R 15004720 15004760 chr2R 15005074 15005114 jockey 9 353 2.0 0.0 1.0 4.5 394 chr2R 15004720 intergenic not near genes chr2R 15004917 intergenic not near genes chr2R 15005114 intergenic not near genes chr2R_9_15000001 chr2R_15000001 RAL-138 778 chr2R 15015442 15015490 chr2R 15022883 15022937 mdg1 7 7447 1.5 1.0 1.2 3.2 7495 chr2R 15015442 intron hbs + chr2R 15019190 intron hbs + chr2R 15022937 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-138 779 chr2R 15084955 15084989 chr2R 15092028 15092063 297 4 7074 2.0 2.0 2.0 1.3 7108 chr2R 15084955 intergenic not near genes chr2R 15088509 intergenic not near genes chr2R 15092063 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-138 780 chr2R 15119295 15119350 chr2R 15127801 15127839 Tirant 14 8497 3.5 3.5 3.5 3.1 8544 chr2R 15119295 intron chn + chr2R 15123567 intron chn + chr2R 15127839 intron chn + chr2R_14_15120001 chr2R_15120001 RAL-138 781 chr2R 15133463 15133485 chr2R 15133566 15133589 12 103 12.0 9.0 10.5 1.0 126 chr2R 15133463 intron chn + chr2R 15133526 intron chn + chr2R 15133589 intron chn + chr2R_12_15130001 chr2R_15130001 RAL-138 782 chr2R 15133486 15133502 chr2R 15133564 15133606 5 99 9.5 9.0 9.2 0.5 120 chr2R 15133486 intron chn + chr2R 15133546 intron chn + chr2R 15133606 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-138 783 chr2R 15134310 15134324 chr2R 15134385 15134425 6 95 1.5 8.5 5.0 1.0 115 chr2R 15134310 intron chn + chr2R 15134368 intron chn + chr2R 15134425 intron chn + chr2R_6_15130001 chr2R_15130001 RAL-138 784 chr2R 15137943 15138004 chr2R 15138048 15138093 29 102 5.0 0.5 2.8 7.6 150 chr2R 15137943 intron chn + chr2R 15138018 intron chn + chr2R 15138093 intron chn + chr2R_29_15135001 chr2R_15135001 RAL-138 785 chr2R 15196073 15196085 chr2R 15196194 15196206 5 121 8.0 2.5 5.2 0.8 133 chr2R 15196073 intergenic not near genes chr2R 15196140 intergenic not near genes chr2R 15196206 intergenic not near genes chr2R_5_15195001 chr2R_15195001 RAL-138 786 chr2R 15196107 15196125 chr2R 15196226 15196246 4 120 2.5 5.0 3.8 0.8 139 chr2R 15196107 intergenic not near genes chr2R 15196176 intergenic not near genes chr2R 15196246 intergenic not near genes chr2R_4_15195001 chr2R_15195001 RAL-138 787 chr2R 15230366 15230374 chr2R 15230668 15230676 5 302 17.0 0.0 8.5 0.5 310 chr2R 15230366 intron,5` UTR Fs -,CR44370 + chr2R 15230521 intron,5` UTR Fs -,CR44370 + chr2R 15230676 intron,5` UTR Fs -,CR44370 + chr2R_5_15230001 chr2R_15230001 RAL-138 788 chr2R 15296148 15296173 chr2R 15296256 15296281 7 107 1.5 3.5 2.5 2.0 133 chr2R 15296148 intron Trpm - chr2R 15296214 intron Trpm - chr2R 15296281 intron Trpm - chr2R_7_15295001 chr2R_15295001 RAL-138 789 chr2R 15330184 15330238 chr2R 15330343 15330397 12 159 6.5 1.5 4.0 2.4 213 chr2R 15330184 intergenic CR44371 - chr2R 15330290 intergenic CR44371 - chr2R 15330397 3` UTR CR44371 - chr2R_12_15330001 chr2R_15330001 RAL-138 790 chr2R 15334586 15334623 chr2R 15334697 15334734 16 109 11.5 10.0 10.8 1.4 148 chr2R 15334586 intron Hr51 + chr2R 15334660 intron Hr51 + chr2R 15334734 intron Hr51 + chr2R_16_15330001 chr2R_15330001 RAL-138 791 chr2R 15334625 15334643 chr2R 15334696 15334751 8 92 7.5 10.0 8.8 0.8 126 chr2R 15334625 intron Hr51 + chr2R 15334688 intron Hr51 + chr2R 15334751 intron Hr51 + chr2R_8_15330001 chr2R_15330001 RAL-138 792 chr2R 15375053 15375072 chr2R 15375186 15375206 8 134 5.5 0.5 3.0 2.0 153 chr2R 15375053 intergenic not near genes chr2R 15375130 intergenic not near genes chr2R 15375206 intergenic not near genes chr2R_8_15375001 chr2R_15375001 RAL-138 793 chr2R 15375341 15375353 chr2R 15376182 15376194 4 840 0.0 3.0 1.5 1.6 853 chr2R 15375341 intergenic not near genes chr2R 15375768 intergenic not near genes chr2R 15376194 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-138 794 chr2R 15410777 15410792 chr2R 15410990 15411009 4 211 4.5 5.5 5.0 0.7 232 chr2R 15410777 intron CG43729 + chr2R 15410893 intron CG43729 + chr2R 15411009 intron CG43729 + chr2R_4_15410001 chr2R_15410001 RAL-138 795 chr2R 15498143 15498193 chr2R 15498250 15498302 5 108 1.0 0.0 0.5 3.3 159 chr2R 15498143 intergenic not near genes chr2R 15498222 intergenic not near genes chr2R 15498302 intergenic not near genes chr2R_5_15495001 chr2R_15495001 RAL-138 796 chr2R 15580698 15580749 chr2R 15580793 15580850 24 96 5.5 1.5 3.5 5.3 152 chr2R 15580698 intergenic not near genes chr2R 15580774 intergenic not near genes chr2R 15580850 intergenic not near genes chr2R_24_15580001 chr2R_15580001 RAL-138 797 chr2R 15685338 15685396 chr2R 15685466 15685524 21 128 9.0 5.0 7.0 2.6 186 chr2R 15685338 intron,exon Ranbp11 +,CG30082 - chr2R 15685431 intron,intron Ranbp11 +,CG30082 - chr2R 15685524 intron,exon Ranbp11 +,CG30082 - chr2R_21_15685001 chr2R_15685001 RAL-138 798 chr2R 15794865 15794878 chr2R 15794980 15794993 6 114 0.0 0.0 0.0 6.0 128 chr2R 15794865 intron,5` UTR Zasp52 -,tun + chr2R 15794929 intron,5` UTR Zasp52 -,tun + chr2R 15794993 intron,intron Zasp52 -,tun + chr2R_6_15790001 chr2R_15790001 RAL-138 799 chr2R 15828128 15828153 chr2R 15828313 15828338 10 185 0.5 4.5 2.5 2.9 210 chr2R 15828128 intron,intron tun +,Poxn - chr2R 15828233 intron,intron tun +,Poxn - chr2R 15828338 intron,intron tun +,Poxn - chr2R_10_15825001 chr2R_15825001 RAL-138 800 chr2R 15847593 15847613 chr2R 15847683 15847715 4 88 12.0 3.5 7.8 0.5 122 chr2R 15847593 intron tun + chr2R 15847654 intron tun + chr2R 15847715 intron tun + chr2R_4_15845001 chr2R_15845001 RAL-138 801 chr2R 15847622 15847631 chr2R 15847723 15847730 7 101 2.0 9.5 5.8 1.0 108 chr2R 15847622 intron tun + chr2R 15847676 intron tun + chr2R 15847730 intron tun + chr2R_7_15845001 chr2R_15845001 RAL-138 802 chr2R 15869323 15869365 chr2R 15869426 15869470 8 104 2.5 6.5 4.5 1.5 147 chr2R 15869323 intergenic sli -,Rif1 - chr2R 15869396 intergenic sli -,Rif1 - chr2R 15869470 intergenic sli -,Rif1 - chr2R_8_15865001 chr2R_15865001 RAL-138 803 chr2R 15928080 15928113 chr2R 15928384 15928426 6 312 2.5 4.5 3.5 1.3 346 chr2R 15928080 intron bdg - chr2R 15928253 intron bdg - chr2R 15928426 intron bdg - chr2R_6_15925001 chr2R_15925001 RAL-138 804 chr2R 15943035 15943073 chr2R 15943200 15943241 8 168 8.0 4.5 6.2 1.1 206 chr2R 15943035 5` UTR Cyp4aa1 + chr2R 15943138 intron Cyp4aa1 + chr2R 15943241 intron Cyp4aa1 + chr2R_8_15940001 chr2R_15940001 RAL-138 805 chr2R 16054935 16054951 chr2R 16055033 16055056 6 104 28.0 28.5 28.2 0.2 121 chr2R 16054935 intron CG8405 + chr2R 16054996 intron CG8405 + chr2R 16055056 intron CG8405 + chr2R_6_16050001 chr2R_16050001 RAL-138 806 chr2R 16061702 16061717 chr2R 16064360 16064375 Burdock 4 2658 11.5 3.5 7.5 0.5 2673 chr2R 16061702 intergenic not near genes chr2R 16063038 intergenic not near genes chr2R 16064375 intergenic not near genes chr2R_4_16060001 chr2R_16060001 RAL-138 807 chr2R 16245404 16245430 chr2R 16245523 16245549 22 118 3.0 9.5 6.2 3.1 145 chr2R 16245404 intron CngA - chr2R 16245476 intron CngA - chr2R 16245549 intron CngA - chr2R_22_16245001 chr2R_16245001 RAL-138 808 chr2R 16352842 16352867 chr2R 16352949 16352975 7 108 5.5 2.5 4.0 1.4 133 chr2R 16352842 intergenic not near genes chr2R 16352908 intergenic not near genes chr2R 16352975 intergenic not near genes chr2R_7_16350001 chr2R_16350001 RAL-138 809 chr2R 16380098 16380138 chr2R 16380221 16380261 8 123 6.0 0.5 3.2 1.9 163 chr2R 16380098 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380180 3` UTR CR45317 - chr2R 16380261 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_8_16380001 chr2R_16380001 RAL-138 810 chr2R 16436672 16436700 chr2R 16436749 16436787 8 80 4.5 5.0 4.8 1.4 115 chr2R 16436672 intergenic not near genes chr2R 16436730 intergenic not near genes chr2R 16436787 intergenic not near genes chr2R_8_16435001 chr2R_16435001 RAL-138 811 chr2R 16538067 16538091 chr2R 16538186 16538209 5 119 7.5 5.5 6.5 0.7 142 chr2R 16538067 intergenic not near genes chr2R 16538138 intergenic not near genes chr2R 16538209 intergenic not near genes chr2R_5_16535001 chr2R_16535001 RAL-138 812 chr2R 16539617 16539667 chr2R 16544851 16544901 copia 9 5234 3.0 4.0 3.5 2.0 5284 chr2R 16539617 intergenic not near genes chr2R 16542259 intergenic not near genes chr2R 16544901 intergenic not near genes chr2R_9_16540001 chr2R_16540001 RAL-138 813 chr2R 16571280 16571290 chr2R 16571406 16571416 4 126 6.0 0.0 3.0 1.0 136 chr2R 16571280 intergenic RpS15 - chr2R 16571348 intergenic RpS15 - chr2R 16571416 intergenic RpS15 - chr2R_4_16570001 chr2R_16570001 RAL-138 814 chr2R 16617062 16617064 chr2R 16617155 16617168 5 101 10.0 12.5 11.2 0.4 106 chr2R 16617062 intron CG5065 + chr2R 16617115 intron CG5065 + chr2R 16617168 intron CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-138 815 chr2R 16617066 16617082 chr2R 16617149 16617181 6 99 5.5 11.0 8.2 0.7 115 chr2R 16617066 intron CG5065 + chr2R 16617124 intron CG5065 + chr2R 16617181 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-138 816 chr2R 16688772 16688812 chr2R 16689158 16689198 9 380 1.5 2.0 1.8 3.2 426 chr2R 16688772 intron CG30463 - chr2R 16688985 intron CG30463 - chr2R 16689198 intron CG30463 - chr2R_9_16685001 chr2R_16685001 RAL-138 817 chr2R 16701296 16701344 chr2R 16701448 16701495 17 151 0.5 2.5 1.5 6.8 199 chr2R 16701296 intron CG30463 - chr2R 16701396 intron CG30463 - chr2R 16701495 intron CG30463 - chr2R_17_16700001 chr2R_16700001 RAL-138 818 chr2R 16713054 16713065 chr2R 16713163 16713174 4 109 0.0 4.0 2.0 1.3 120 chr2R 16713054 intron CG30463 - chr2R 16713114 intron CG30463 - chr2R 16713174 intron CG30463 - chr2R_4_16710001 chr2R_16710001 RAL-138 819 chr2R 16775619 16775674 chr2R 16775908 16775963 14 288 3.0 3.0 3.0 3.5 344 chr2R 16775619 3` UTR Arp53D + chr2R 16775791 intergenic Arp53D + chr2R 16775963 intergenic Arp53D + chr2R_14_16775001 chr2R_16775001 RAL-138 820 chr2R 16787451 16787483 chr2R 16787558 16787589 7 105 9.0 1.0 5.0 1.2 138 chr2R 16787451 intron CG5522 + chr2R 16787520 intron CG5522 + chr2R 16787589 intron CG5522 + chr2R_7_16785001 chr2R_16785001 RAL-138 821 chr2R 16972418 16972456 chr2R 16972540 16972573 5 121 1.0 2.0 1.5 2.0 155 chr2R 16972418 intergenic not near genes chr2R 16972496 intergenic not near genes chr2R 16972573 intergenic not near genes chr2R_5_16970001 chr2R_16970001 RAL-138 822 chr2R 17147226 17147256 chr2R 17152282 17152312 jockey 5 5056 3.0 2.0 2.5 1.4 5086 chr2R 17147226 intergenic not near genes chr2R 17149769 intergenic not near genes chr2R 17152312 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-138 823 chr2R 17161331 17161348 chr2R 17161563 17161579 10 231 16.0 0.0 8.0 1.1 248 chr2R 17161331 intergenic not near genes chr2R 17161455 intergenic not near genes chr2R 17161579 intergenic not near genes chr2R_10_17160001 chr2R_17160001 RAL-138 824 chr2R 17225273 17225304 chr2R 17225377 17225408 22 100 18.0 17.0 17.5 1.2 135 chr2R 17225273 intron mbl + chr2R 17225340 intron mbl + chr2R 17225408 intron mbl + chr2R_22_17225001 chr2R_17225001 RAL-138 825 chr2R 17236485 17236522 chr2R 17241714 17241751 copia 5 5229 2.5 3.0 2.8 1.3 5266 chr2R 17236485 intron mbl + chr2R 17239118 intron mbl + chr2R 17241751 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-138 826 chr2R 17395261 17395313 chr2R 17395364 17395416 6 102 8.5 8.0 8.2 0.7 155 chr2R 17395261 intron Sip1 + chr2R 17395338 intron Sip1 + chr2R 17395416 intron Sip1 + chr2R_6_17395001 chr2R_17395001 RAL-138 827 chr2R 17396522 17396575 chr2R 17396669 17396874 6 172 2.5 6.0 4.2 1.2 352 chr2R 17396522 intron Sip1 + chr2R 17396698 intron Sip1 + chr2R 17396874 intron Sip1 + chr2R_6_17395001 chr2R_17395001 RAL-138 828 chr2R 17400608 17400655 chr2R 17400730 17400777 10 120 29.5 24.0 26.8 0.4 169 chr2R 17400608 intron Sip1 + chr2R 17400692 intron Sip1 + chr2R 17400777 intron Sip1 + chr2R_10_17400001 chr2R_17400001 RAL-138 829 chr2R 17442444 17442492 chr2R 17442563 17442611 8 118 13.5 10.0 11.8 0.6 167 chr2R 17442444 intron,3` UTR EDTP -,CG18467 + chr2R 17442528 intron EDTP - chr2R 17442611 intron EDTP - chr2R_8_17440001 chr2R_17440001 RAL-138 830 chr2R 17470309 17470352 chr2R 17470414 17470457 6 105 5.5 4.5 5.0 1.0 148 chr2R 17470309 intron qkr54B + chr2R 17470383 intron qkr54B + chr2R 17470457 intron qkr54B + chr2R_6_17470001 chr2R_17470001 RAL-138 831 chr2R 17532217 17532245 chr2R 17532331 17532358 12 111 15.0 14.0 14.5 0.8 141 chr2R 17532217 intron Patronin - chr2R 17532288 intron Patronin - chr2R 17532358 intron Patronin - chr2R_12_17530001 chr2R_17530001 RAL-138 832 chr2R 17561582 17561590 chr2R 17561686 17561694 4 104 13.5 7.5 10.5 0.3 112 chr2R 17561582 exon Klp54D + chr2R 17561638 intron Klp54D + chr2R 17561694 intron Klp54D + chr2R_4_17560001 chr2R_17560001 RAL-138 833 chr2R 17561601 17561614 chr2R 17561685 17561718 8 101 10.5 7.5 9.0 0.8 117 chr2R 17561601 exon Klp54D + chr2R 17561660 intron Klp54D + chr2R 17561718 exon Klp54D + chr2R_8_17560001 chr2R_17560001 RAL-138 834 chr2R 17640106 17640136 chr2R 17640354 17640356 5 247 8.0 11.0 9.5 0.5 250 chr2R 17640106 intergenic not near genes chr2R 17640231 intergenic not near genes chr2R 17640356 intergenic not near genes chr2R_5_17640001 chr2R_17640001 RAL-138 835 chr2R 17709960 17710008 chr2R 17710076 17710123 7 114 5.0 1.0 3.0 1.8 163 chr2R 17709960 intron CG6424 - chr2R 17710042 intron CG6424 - chr2R 17710123 intron CG6424 - chr2R_7_17710001 chr2R_17710001 RAL-138 836 chr2R 17784012 17784055 chr2R 17784276 17784321 pogo 9 265 3.5 3.5 3.5 2.0 309 chr2R 17784012 intergenic mir-31a - chr2R 17784166 intergenic mir-31a - chr2R 17784321 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-138 837 chr2R 17794765 17794788 chr2R 17794869 17794892 12 104 2.5 9.5 6.0 1.7 127 chr2R 17794765 intron Dhit + chr2R 17794828 intron Dhit + chr2R 17794892 intron Dhit + chr2R_12_17790001 chr2R_17790001 RAL-138 838 chr2R 17846771 17846814 chr2R 17846880 17846923 16 109 16.0 20.0 18.0 0.8 152 chr2R 17846771 intron,5` UTR olf186-F +,olf186-M + chr2R 17846847 intron,5` UTR olf186-F +,olf186-M + chr2R 17846923 intron,5` UTR olf186-F +,olf186-M + chr2R_16_17845001 chr2R_17845001 RAL-138 839 chr2R 17852907 17852955 chr2R 17853023 17853070 14 116 2.0 5.0 3.5 3.1 163 chr2R 17852907 intron olf186-F + chr2R 17852988 intron olf186-F + chr2R 17853070 intron olf186-F + chr2R_14_17850001 chr2R_17850001 RAL-138 840 chr2R 17973807 17973827 chr2R 17973897 17973929 5 96 3.0 5.5 4.2 1.0 122 chr2R 17973807 intergenic not near genes chr2R 17973868 intergenic not near genes chr2R 17973929 intergenic not near genes chr2R_5_17970001 chr2R_17970001 RAL-138 841 chr2R 17984645 17984670 chr2R 17984752 17984777 4 107 1.0 0.5 0.8 2.2 132 chr2R 17984645 intron dpr13 - chr2R 17984711 intron dpr13 - chr2R 17984777 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-138 842 chr2R 17987753 17987812 chr2R 17988107 17988166 26 351 6.5 5.5 6.0 3.7 413 chr2R 17987753 intron dpr13 - chr2R 17987960 intron dpr13 - chr2R 17988166 intron dpr13 - chr2R_26_17985001 chr2R_17985001 RAL-138 843 chr2R 17988556 17988605 chr2R 17989119 17989169 21 564 6.0 7.0 6.5 2.8 613 chr2R 17988556 intron dpr13 - chr2R 17988862 intron dpr13 - chr2R 17989169 intron dpr13 - chr2R_21_17985001 chr2R_17985001 RAL-138 844 chr2R 18023165 18023181 chr2R 18023274 18023292 7 110 4.5 6.0 5.2 1.1 127 chr2R 18023165 intergenic not near genes chr2R 18023228 intergenic not near genes chr2R 18023292 intergenic not near genes chr2R_7_18020001 chr2R_18020001 RAL-138 845 chr2R 18035389 18035431 chr2R 18035489 18035532 10 98 7.0 4.0 5.5 1.5 143 chr2R 18035389 intergenic not near genes chr2R 18035460 intergenic not near genes chr2R 18035532 intergenic not near genes chr2R_10_18035001 chr2R_18035001 RAL-138 846 chr2R 18045647 18045697 chr2R 18046024 18046074 jockey 20 377 6.5 7.5 7.0 2.5 427 chr2R 18045647 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046074 intergenic CG5767 - chr2R_20_18045001 chr2R_18045001 RAL-138 847 chr2R 18111017 18111063 chr2R 18111388 18111434 8 371 25.5 17.5 21.5 0.4 417 chr2R 18111017 intergenic not near genes chr2R 18111226 intergenic not near genes chr2R 18111434 intergenic not near genes chr2R_8_18110001 chr2R_18110001 RAL-138 848 chr2R 18111668 18111707 chr2R 18115561 18115600 F-element 6 3893 2.0 2.5 2.2 1.9 3932 chr2R 18111668 intergenic not near genes chr2R 18113634 intergenic not near genes chr2R 18115600 intergenic not near genes chr2R_6_18110001 chr2R_18110001 RAL-138 849 chr2R 18307553 18307591 chr2R 18307666 18307704 7 113 3.5 3.0 3.2 1.7 151 chr2R 18307553 intron sbb - chr2R 18307628 intron sbb - chr2R 18307704 intron sbb - chr2R_7_18305001 chr2R_18305001 RAL-138 850 chr2R 18358371 18358413 chr2R 18372606 18372650 roo 9 14237 3.5 3.5 3.5 2.0 14279 chr2R 18358371 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372650 intergenic not near genes chr2R_9_18365001 chr2R_18365001 RAL-138 851 chr2R 18405731 18405785 chr2R 18405837 18405889 4 105 0.5 0.0 0.2 3.3 158 chr2R 18405731 intergenic GstE6 +,GstE5 + chr2R 18405810 intergenic GstE6 +,GstE5 + chr2R 18405889 intergenic GstE6 + chr2R_4_18405001 chr2R_18405001 RAL-138 852 chr2R 18487817 18487854 chr2R 18495293 18495341 blood 4 7479 0.0 5.0 2.5 1.1 7524 chr2R 18487817 intron CG30116 - chr2R 18491579 intron CG30116 - chr2R 18495341 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-138 853 chr2R 18550554 18550610 chr2R 18550666 18550724 24 111 5.5 6.0 5.8 3.5 170 chr2R 18550554 intergenic not near genes chr2R 18550639 intergenic not near genes chr2R 18550724 intergenic not near genes chr2R_24_18550001 chr2R_18550001 RAL-138 854 chr2R 18575130 18575164 chr2R 18575371 18575405 7 239 3.5 6.5 5.0 1.2 275 chr2R 18575130 intron GEFmeso - chr2R 18575268 intron GEFmeso - chr2R 18575405 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-138 855 chr2R 18575777 18575805 chr2R 18581990 18582005 3S18 7 6210 10.5 7.5 9.0 0.7 6228 chr2R 18575777 intron GEFmeso - chr2R 18578891 intron GEFmeso - chr2R 18582005 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-138 856 chr2R 18575814 18575820 chr2R 18581984 18582010 3S18 6 6191 8.5 7.0 7.8 0.7 6196 chr2R 18575814 intron GEFmeso - chr2R 18578912 intron GEFmeso - chr2R 18582010 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-138 857 chr2R 18590841 18590898 chr2R 18600018 18600075 roo 12 9174 3.5 2.5 3.0 3.0 9234 chr2R 18590841 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600075 intron GEFmeso - chr2R_12_18595001 chr2R_18595001 RAL-138 858 chr2R 18646408 18646429 chr2R 18646578 18646587 5 168 3.5 4.5 4.0 1.0 179 chr2R 18646408 intron SP2637 - chr2R 18646498 intron SP2637 - chr2R 18646587 intron SP2637 - chr2R_5_18645001 chr2R_18645001 RAL-138 859 chr2R 18678504 18678534 chr2R 18678649 18678679 9 145 3.0 0.5 1.8 3.2 175 chr2R 18678504 intergenic CG44434 -,CG44435 - chr2R 18678592 intergenic CG44434 -,CG44435 - chr2R 18678679 3` UTR,3` UTR CG44434 -,CG44435 - chr2R_9_18675001 chr2R_18675001 RAL-138 860 chr2R 18692881 18692915 chr2R 18692993 18693006 8 107 4.0 2.0 3.0 2.0 125 chr2R 18692881 intron Sik3 + chr2R 18692944 intron Sik3 + chr2R 18693006 intron Sik3 + chr2R_8_18690001 chr2R_18690001 RAL-138 861 chr2R 18713219 18713272 chr2R 18713321 18713371 9 100 1.5 0.5 1.0 4.5 152 chr2R 18713219 intergenic not near genes chr2R 18713295 intergenic not near genes chr2R 18713371 intergenic not near genes chr2R_9_18710001 chr2R_18710001 RAL-138 862 chr2R 18745051 18745106 chr2R 18745181 18745236 13 130 1.5 8.0 4.8 2.2 185 chr2R 18745051 intron Hs3st-A + chr2R 18745144 intron Hs3st-A + chr2R 18745236 intron Hs3st-A + chr2R_13_18745001 chr2R_18745001 RAL-138 863 chr2R 18835871 18835911 chr2R 18835978 18836015 4 106 4.5 0.0 2.2 1.2 144 chr2R 18835871 intron CG15083 + chr2R 18835943 intron CG15083 + chr2R 18836015 intron CG15083 + chr2R_4_18835001 chr2R_18835001 RAL-138 864 chr2R 18871622 18871659 chr2R 18871732 18871767 7 110 8.0 0.0 4.0 1.4 145 chr2R 18871622 intergenic not near genes chr2R 18871694 intergenic not near genes chr2R 18871767 intergenic not near genes chr2R_7_18870001 chr2R_18870001 RAL-138 865 chr2R 18930426 18930482 chr2R 18930544 18930600 5 118 0.5 1.5 1.0 2.5 174 chr2R 18930426 intron sano + chr2R 18930513 intron sano + chr2R 18930600 intron sano + chr2R_5_18930001 chr2R_18930001 RAL-138 866 chr2R 18953150 18953183 chr2R 18953262 18953295 9 112 3.5 5.0 4.2 1.7 145 chr2R 18953150 intron sano + chr2R 18953222 intron sano + chr2R 18953295 intron sano + chr2R_9_18950001 chr2R_18950001 RAL-138 867 chr2R 18964894 18964953 chr2R 18964995 18965054 22 101 6.0 3.5 4.8 3.8 160 chr2R 18964894 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965054 intergenic not near genes chr2R_22_18960001 chr2R_18960001 RAL-138 868 chr2R 18992020 18992037 chr2R 18992169 18992203 7 163 5.0 5.0 5.0 1.2 183 chr2R 18992020 intron tn + chr2R 18992112 intron tn + chr2R 18992203 intron tn + chr2R_7_18990001 chr2R_18990001 RAL-138 869 chr2R 19015421 19015428 chr2R 19015534 19015540 4 112 7.5 8.5 8.0 0.4 119 chr2R 19015421 intergenic not near genes chr2R 19015480 intergenic not near genes chr2R 19015540 intergenic not near genes chr2R_4_19015001 chr2R_19015001 RAL-138 870 chr2R 19015439 19015458 chr2R 19015531 19015547 8 101 4.0 7.5 5.8 1.2 108 chr2R 19015439 intergenic not near genes chr2R 19015493 intergenic not near genes chr2R 19015547 intergenic not near genes chr2R_8_19015001 chr2R_19015001 RAL-138 871 chr2R 19048226 19048262 chr2R 19048612 19048635 8 382 2.5 3.0 2.8 2.1 409 chr2R 19048226 intergenic not near genes chr2R 19048430 intergenic not near genes chr2R 19048635 intergenic not near genes chr2R_8_19045001 chr2R_19045001 RAL-138 872 chr2R 19053005 19053047 chr2R 19053107 19053152 12 103 4.5 6.5 5.5 1.8 147 chr2R 19053005 intergenic not near genes chr2R 19053078 intergenic not near genes chr2R 19053152 intergenic not near genes chr2R_12_19050001 chr2R_19050001 RAL-138 873 chr2R 19185618 19185654 chr2R 19185853 19185889 8 233 2.5 4.0 3.2 1.9 271 chr2R 19185618 intron hppy + chr2R 19185754 intron hppy + chr2R 19185889 intron hppy + chr2R_8_19185001 chr2R_19185001 RAL-138 874 chr2R 19185661 19185669 chr2R 19185852 19185863 4 201 2.0 3.5 2.8 1.1 202 chr2R 19185661 intron hppy + chr2R 19185762 intron hppy + chr2R 19185863 intron hppy + chr2R_4_19185001 chr2R_19185001 RAL-138 875 chr2R 19234819 19234865 chr2R 19234926 19234970 10 107 1.5 3.0 2.2 3.1 151 chr2R 19234819 intron cora + chr2R 19234894 intron cora + chr2R 19234970 intron cora + chr2R_10_19230001 chr2R_19230001 RAL-138 876 chr2R 19274910 19274964 chr2R 19275011 19275065 23 101 4.5 4.0 4.2 4.4 155 chr2R 19274910 intron rib + chr2R 19274988 intron rib + chr2R 19275065 intron rib + chr2R_23_19270001 chr2R_19270001 RAL-138 877 chr2R 19300940 19300993 chr2R 19301048 19301101 40 108 4.0 14.0 9.0 4.0 161 chr2R 19300940 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301101 intron Tab2 + chr2R_40_19300001 chr2R_19300001 RAL-138 878 chr2R 19504580 19504627 chr2R 19504688 19504732 9 102 2.0 2.5 2.2 2.8 152 chr2R 19504580 3` UTR CG11007 + chr2R 19504656 intergenic CG11007 +,CR44472 + chr2R 19504732 intergenic CR44472 +,CG11007 + chr2R_9_19500001 chr2R_19500001 RAL-138 879 chr2R 19639573 19639594 chr2R 19639673 19639695 6 101 2.0 5.5 3.8 1.2 122 chr2R 19639573 intergenic not near genes chr2R 19639634 intergenic not near genes chr2R 19639695 intergenic not near genes chr2R_6_19635001 chr2R_19635001 RAL-138 880 chr2R 19773992 19774034 chr2R 19774130 19774172 5 134 1.5 0.5 1.0 2.5 180 chr2R 19773992 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774172 intergenic not near genes chr2R_5_19770001 chr2R_19770001 RAL-138 881 chr2R 19776574 19776629 chr2R 19779922 19779945 jockey 4 3340 1.0 3.5 2.2 1.2 3371 chr2R 19776574 intergenic not near genes chr2R 19778260 intergenic not near genes chr2R 19779945 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-138 882 chr2R 19797351 19797377 chr2R 19797477 19797486 8 122 5.5 4.0 4.8 1.4 135 chr2R 19797351 intergenic not near genes chr2R 19797418 intergenic not near genes chr2R 19797486 intergenic not near genes chr2R_8_19795001 chr2R_19795001 RAL-138 883 chr2R 19957425 19957461 chr2R 19962633 19962688 copia 6 5218 3.5 3.5 3.5 1.3 5263 chr2R 19957425 intergenic CG44623 + chr2R 19960056 intergenic not near genes chr2R 19962688 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-138 884 chr2R 20069211 20069252 chr2R 20071875 20071915 opus 4 2662 0.5 0.5 0.5 2.7 2704 chr2R 20069211 intergenic not near genes chr2R 20070563 intergenic not near genes chr2R 20071915 intergenic not near genes chr2R_4_20070001 chr2R_20070001 RAL-138 885 chr2R 20080605 20080622 chr2R 20080707 20080724 4 98 0.0 9.5 4.8 0.7 119 chr2R 20080605 intergenic not near genes chr2R 20080664 intergenic not near genes chr2R 20080724 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-138 886 chr2R 20127170 20127225 chr2R 20127330 20127365 7 151 3.0 1.0 2.0 2.3 195 chr2R 20127170 intergenic not near genes chr2R 20127268 intergenic not near genes chr2R 20127365 intergenic not near genes chr2R_7_20125001 chr2R_20125001 RAL-138 887 chr2R 20338732 20338785 chr2R 20338837 20338890 6 105 4.0 0.0 2.0 2.0 158 chr2R 20338732 intergenic not near genes chr2R 20338811 intergenic not near genes chr2R 20338890 intergenic not near genes chr2R_6_20335001 chr2R_20335001 RAL-138 888 chr2R 20502276 20502311 chr2R 20502415 20502450 6 139 3.0 1.0 2.0 2.0 174 chr2R 20502276 intergenic not near genes chr2R 20502363 intergenic not near genes chr2R 20502450 intergenic not near genes chr2R_6_20500001 chr2R_20500001 RAL-138 889 chr2R 20510313 20510355 chr2R 20510662 20510703 10 348 2.5 2.5 2.5 2.9 390 chr2R 20510313 intergenic not near genes chr2R 20510508 intergenic not near genes chr2R 20510703 intergenic CR44648 + chr2R_10_20510001 chr2R_20510001 RAL-138 890 chr2R 20523016 20523068 chr2R 20523152 20523188 8 127 2.0 4.0 3.0 2.0 172 chr2R 20523016 intergenic not near genes chr2R 20523102 intergenic not near genes chr2R 20523188 intergenic not near genes chr2R_8_20520001 chr2R_20520001 RAL-138 891 chr2R 20572547 20572586 chr2R 20572662 20572701 6 115 2.0 2.0 2.0 2.0 154 chr2R 20572547 intron qsm - chr2R 20572624 intron qsm - chr2R 20572701 intron qsm - chr2R_6_20570001 chr2R_20570001 RAL-138 892 chr2R 20667340 20667347 chr2R 20667476 20667484 4 136 8.0 13.5 10.8 0.3 144 chr2R 20667340 intergenic Fem-1 -,exu - chr2R 20667412 intergenic exu -,Fem-1 - chr2R 20667484 3` UTR exu - chr2R_4_20665001 chr2R_20665001 RAL-138 893 chr2R 20702645 20702699 chr2R 20702745 20702789 15 98 1.5 2.5 2.0 5.0 144 chr2R 20702645 intron dpr + chr2R 20702717 intron dpr + chr2R 20702789 intron dpr + chr2R_15_20700001 chr2R_20700001 RAL-138 894 chr2R 20723661 20723681 chr2R 20723816 20723851 4 163 5.0 6.5 5.8 0.6 190 chr2R 20723661 intron dpr + chr2R 20723756 intron dpr + chr2R 20723851 intron dpr + chr2R_4_20720001 chr2R_20720001 RAL-138 895 chr2R 20739416 20739466 chr2R 20744209 20744259 F-element 7 4788 1.0 3.5 2.2 2.2 4843 chr2R 20739416 intron dpr + chr2R 20741838 intron dpr + chr2R 20744259 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-138 896 chr2R 20776537 20776560 chr2R 20776639 20776662 5 102 6.0 0.0 3.0 1.2 125 chr2R 20776537 intergenic CG43709 -,CG43710 - chr2R 20776600 intergenic CG43710 -,CG43709 - chr2R 20776662 intergenic CG43710 -,CG43709 - chr2R_5_20775001 chr2R_20775001 RAL-138 897 chr2R 20783286 20783320 chr2R 20788083 20788117 F-element 7 4797 3.5 2.0 2.8 1.8 4831 chr2R 20783286 intergenic not near genes chr2R 20785702 intergenic not near genes chr2R 20788117 intergenic CG43666 - chr2R_7_20785001 chr2R_20785001 RAL-138 898 chr2R 20848904 20848960 chr2R 20849015 20849071 25 111 7.0 5.0 6.0 3.6 167 chr2R 20848904 exon CG17999 - chr2R 20848988 intron CG17999 - chr2R 20849071 intron CG17999 - chr2R_25_20845001 chr2R_20845001 RAL-138 899 chr2R 20962883 20962937 chr2R 20963006 20963060 10 123 0.5 3.0 1.8 3.6 177 chr2R 20962883 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963060 intergenic not near genes chr2R_10_20960001 chr2R_20960001 RAL-138 900 chr2R 20967002 20967040 chr2R 20967104 20967142 6 102 7.5 0.0 3.8 1.2 140 chr2R 20967002 intergenic not near genes chr2R 20967072 intergenic not near genes chr2R 20967142 intergenic not near genes chr2R_6_20965001 chr2R_20965001 RAL-138 901 chr2R 20967478 20967534 chr2R 20967613 20967667 15 134 7.5 5.5 6.5 2.0 189 chr2R 20967478 intergenic not near genes chr2R 20967572 intergenic not near genes chr2R 20967667 intergenic not near genes chr2R_15_20965001 chr2R_20965001 RAL-138 902 chr2R 21103524 21103553 chr2R 21103626 21103658 7 104 3.0 0.0 1.5 2.8 134 chr2R 21103524 intron ktub + chr2R 21103591 intron ktub + chr2R 21103658 intron ktub + chr2R_7_21100001 chr2R_21100001 RAL-138 903 chr2R 21151094 21151145 chr2R 21153752 21153803 opus 36 2658 12.0 12.5 12.2 2.7 2709 chr2R 21151094 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153803 intron CG30389 - chr2R_36_21150001 chr2R_21150001 RAL-138 904 chr2R 21264722 21264748 chr2R 21264828 21264855 23 107 10.0 5.0 7.5 2.7 133 chr2R 21264722 intron Rgk3 + chr2R 21264788 intron Rgk3 + chr2R 21264855 intron,3` UTR Rgk3 +,CG30391 - chr2R_23_21260001 chr2R_21260001 RAL-138 905 chr2R 21285409 21285436 chr2R 21285511 21285538 7 101 7.0 5.0 6.0 1.0 129 chr2R 21285409 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285474 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285538 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_7_21285001 chr2R_21285001 RAL-138 906 chr2R 21505743 21505791 chr2R 21505849 21505897 17 105 7.5 3.0 5.2 2.7 154 chr2R 21505743 intron MESK2 + chr2R 21505820 intron MESK2 + chr2R 21505897 intron MESK2 + chr2R_17_21505001 chr2R_21505001 RAL-138 907 chr2R 21546760 21546819 chr2R 21546866 21546877 17 92 7.5 9.0 8.2 1.8 117 chr2R 21546760 intron Egfr + chr2R 21546818 intron Egfr + chr2R 21546877 intron Egfr + chr2R_17_21545001 chr2R_21545001 RAL-138 908 chr2R 21592848 21592855 chr2R 21592926 21592933 5 81 24.5 16.5 20.5 0.2 85 chr2R 21592848 intergenic not near genes chr2R 21592890 intergenic not near genes chr2R 21592933 intergenic not near genes chr2R_5_21590001 chr2R_21590001 RAL-138 909 chr2R 21721555 21721610 chr2R 21721667 21721722 18 110 9.5 0.0 4.8 3.1 167 chr2R 21721555 intron LBR + chr2R 21721638 intron LBR + chr2R 21721722 intron LBR + chr2R_18_21720001 chr2R_21720001 RAL-138 910 chr2R 21753065 21753108 chr2R 21753575 21753618 roo 6 510 4.0 2.0 3.0 1.5 553 chr2R 21753065 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753618 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-138 911 chr2R 21759536 21759588 chr2R 21759648 21759700 10 112 2.5 3.0 2.8 2.6 164 chr2R 21759536 intergenic not near genes chr2R 21759618 intergenic not near genes chr2R 21759700 intergenic not near genes chr2R_10_21755001 chr2R_21755001 RAL-138 912 chr2R 21809512 21809553 chr2R 21817777 21817813 roo 7 8264 1.0 6.0 3.5 1.6 8301 chr2R 21809512 intergenic not near genes chr2R 21813662 intergenic not near genes chr2R 21817813 intergenic not near genes chr2R_7_21810001 chr2R_21810001 RAL-138 913 chr2R 21832403 21832454 chr2R 21832833 21832884 10 424 1.5 3.5 2.5 2.9 481 chr2R 21832403 intergenic CG34040 - chr2R 21832644 exon CG34040 - chr2R 21832884 exon CG34040 - chr2R_10_21830001 chr2R_21830001 RAL-138 914 chr2R 21946746 21946793 chr2R 21946864 21946914 14 121 4.0 2.5 3.2 3.3 168 chr2R 21946746 intergenic Fili + chr2R 21946830 intergenic not near genes chr2R 21946914 intergenic not near genes chr2R_14_21945001 chr2R_21945001 RAL-138 915 chr2R 21951368 21951420 chr2R 21951499 21951551 9 129 1.5 4.0 2.8 2.4 183 chr2R 21951368 intergenic CG13488 + chr2R 21951460 intergenic CG13488 + chr2R 21951551 intergenic CG13488 + chr2R_9_21950001 chr2R_21950001 RAL-138 916 chr2R 22003073 22003093 chr2R 22003180 22003204 9 108 13.0 2.5 7.8 1.0 131 chr2R 22003073 intron CG34370 - chr2R 22003138 intron CG34370 - chr2R 22003204 intron CG34370 - chr2R_9_22000001 chr2R_22000001 RAL-138 917 chr2R 22003094 22003122 chr2R 22003176 22003221 15 103 5.5 2.5 4.0 3.0 127 chr2R 22003094 intron CG34370 - chr2R 22003158 intron CG34370 - chr2R 22003221 intron CG34370 - chr2R_15_22000001 chr2R_22000001 RAL-138 918 chr2R 22012973 22013008 chr2R 22013091 22013128 7 120 2.0 2.5 2.2 2.2 155 chr2R 22012973 intron CG34370 - chr2R 22013050 intron CG34370 - chr2R 22013128 intron CG34370 - chr2R_7_22010001 chr2R_22010001 RAL-138 919 chr2R 22072655 22072693 chr2R 22072765 22072803 5 109 7.0 4.0 5.5 0.8 148 chr2R 22072655 intron CG11474 - chr2R 22072729 intron CG11474 - chr2R 22072803 exon CG11474 - chr2R_5_22070001 chr2R_22070001 RAL-138 920 chr2R 22072698 22072705 chr2R 22072808 22072815 4 110 4.5 7.5 6.0 0.6 117 chr2R 22072698 intron CG11474 - chr2R 22072756 intron CG11474 - chr2R 22072815 exon CG11474 - chr2R_4_22070001 chr2R_22070001 RAL-138 921 chr2R 22132266 22132284 chr2R 22132371 22132389 4 105 3.5 2.5 3.0 1.0 123 chr2R 22132266 intergenic not near genes chr2R 22132328 intergenic not near genes chr2R 22132389 intergenic not near genes chr2R_4_22130001 chr2R_22130001 RAL-138 922 chr2R 22148051 22148068 chr2R 22148161 22148192 5 121 4.0 2.0 3.0 1.2 141 chr2R 22148051 intron a + chr2R 22148122 intron a + chr2R 22148192 intron a + chr2R_5_22145001 chr2R_22145001 RAL-138 923 chr2R 22155947 22155997 chr2R 22156196 22156196 13 239 2.5 2.0 2.2 4.1 249 chr2R 22155947 intron a + chr2R 22156072 intron a + chr2R 22156196 intron a + chr2R_13_22155001 chr2R_22155001 RAL-138 924 chr2R 22178734 22178776 chr2R 22178846 22178887 8 111 0.0 8.0 4.0 1.6 153 chr2R 22178734 intron CG11170 - chr2R 22178810 intron CG11170 - chr2R 22178887 intron CG11170 - chr2R_8_22175001 chr2R_22175001 RAL-138 925 chr2R 22179211 22179224 chr2R 22179304 22179313 5 101 0.0 2.5 1.2 2.3 102 chr2R 22179211 intron CG11170 - chr2R 22179262 intron CG11170 - chr2R 22179313 intron CG11170 - chr2R_5_22175001 chr2R_22175001 RAL-138 926 chr2R 22185670 22185690 chr2R 22185794 22185814 5 124 4.0 0.0 2.0 1.7 144 chr2R 22185670 3` UTR MED16 + chr2R 22185742 3` UTR MED16 + chr2R 22185814 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-138 927 chr2R 22189421 22189474 chr2R 22189574 22189626 18 150 4.5 3.5 4.0 3.6 205 chr2R 22189421 3` UTR Vps35 + chr2R 22189524 3` UTR Vps35 + chr2R 22189626 3` UTR Vps35 + chr2R_18_22185001 chr2R_22185001 RAL-138 928 chr2R 22349674 22349717 chr2R 22351483 22351525 jockey 13 1808 5.5 9.5 7.5 1.5 1851 chr2R 22349674 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351525 intron Liprin-gamma - chr2R_13_22350001 chr2R_22350001 RAL-138 929 chr2R 22362638 22362671 chr2R 22362742 22362775 6 104 2.5 2.0 2.2 1.9 137 chr2R 22362638 intron Liprin-gamma - chr2R 22362706 intron Liprin-gamma - chr2R 22362775 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-138 930 chr2R 22366516 22366554 chr2R 22366867 22366905 7 351 13.5 14.5 14.0 0.5 389 chr2R 22366516 intron Liprin-gamma - chr2R 22366710 intron Liprin-gamma - chr2R 22366905 intron Liprin-gamma - chr2R_7_22365001 chr2R_22365001 RAL-138 931 chr2R 22465294 22465320 chr2R 22465511 22465538 BS 15 218 8.5 4.0 6.2 2.1 244 chr2R 22465294 intron CG10384 + chr2R 22465416 intron CG10384 + chr2R 22465538 intron CG10384 + chr2R_15_22465001 chr2R_22465001 RAL-138 932 chr2R 22503776 22503804 chr2R 22503897 22503925 16 121 6.5 5.5 6.0 2.3 149 chr2R 22503776 intron px - chr2R 22503850 intron px - chr2R 22503925 intron px - chr2R_16_22500001 chr2R_22500001 RAL-138 933 chr2R 22524951 22524989 chr2R 22525052 22525089 9 101 2.0 3.0 2.5 2.6 138 chr2R 22524951 intron px - chr2R 22525020 intron px - chr2R 22525089 intron px - chr2R_9_22525001 chr2R_22525001 RAL-138 934 chr2R 22525735 22525776 chr2R 22529318 22529360 jockey 16 3583 4.0 5.5 4.8 2.8 3625 chr2R 22525735 intron px - chr2R 22527548 intron px - chr2R 22529360 intron px - chr2R_16_22525001 chr2R_22525001 RAL-138 935 chr2R 22574986 22575014 chr2R 22575082 22575114 7 98 2.0 3.0 2.5 2.0 128 chr2R 22574986 intron dnr1 - chr2R 22575050 intron dnr1 - chr2R 22575114 intron dnr1 - chr2R_7_22575001 chr2R_22575001 RAL-138 936 chr2R 22620813 22620859 chr2R 22620938 22620984 8 125 2.0 4.5 3.2 1.9 171 chr2R 22620813 5` UTR CG33143 + chr2R 22620898 5` UTR CG33143 + chr2R 22620984 5` UTR CG33143 + chr2R_8_22620001 chr2R_22620001 RAL-138 937 chr2R 22666569 22666624 chr2R 22666674 22666729 21 105 5.5 6.5 6.0 3.0 160 chr2R 22666569 3` UTR,intron CR45269 -,CR42868 + chr2R 22666649 5` UTR CR42868 + chr2R 22666729 5` UTR CR42868 + chr2R_21_22665001 chr2R_22665001 RAL-138 938 chr2R 22787575 22787591 chr2R 22787733 22787749 5 158 3.0 3.0 3.0 1.2 174 chr2R 22787575 intron CG42260 - chr2R 22787662 intron CG42260 - chr2R 22787749 intron CG42260 - chr2R_5_22785001 chr2R_22785001 RAL-138 939 chr2R 22839477 22839526 chr2R 22839579 22839635 4 105 5.5 0.0 2.8 1.1 158 chr2R 22839477 intergenic CG9825 + chr2R 22839556 intergenic CG9825 + chr2R 22839635 intergenic CG9825 + chr2R_4_22835001 chr2R_22835001 RAL-138 940 chr2R 22843036 22843046 chr2R 22845027 22845037 flea 5 1991 8.5 9.5 9.0 0.5 2001 chr2R 22843036 intergenic CG9826 + chr2R 22844036 intergenic not near genes chr2R 22845037 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-138 941 chr2R 22860749 22860804 chr2R 22860864 22860920 20 114 9.0 1.0 5.0 3.3 171 chr2R 22860749 intergenic not near genes chr2R 22860834 intergenic not near genes chr2R 22860920 intergenic not near genes chr2R_20_22860001 chr2R_22860001 RAL-138 942 chr2R 22868238 22868283 chr2R 22868366 22868421 32 131 14.5 12.5 13.5 2.2 183 chr2R 22868238 5` UTR fd59A + chr2R 22868330 5` UTR fd59A + chr2R 22868421 5` UTR fd59A + chr2R_32_22865001 chr2R_22865001 RAL-138 943 chr2R 22873604 22873659 chr2R 22873705 22873760 13 100 4.0 2.0 3.0 3.2 156 chr2R 22873604 exon CG13532 + chr2R 22873682 intron CG13532 + chr2R 22873760 intron CG13532 + chr2R_13_22870001 chr2R_22870001 RAL-138 944 chr2R 22906355 22906413 chr2R 22906579 22906632 14 217 4.0 7.0 5.5 2.2 277 chr2R 22906355 intron nahoda + chr2R 22906494 intron nahoda + chr2R 22906632 intron nahoda + chr2R_14_22905001 chr2R_22905001 RAL-138 945 chr2R 22971490 22971530 chr2R 22971578 22971633 12 96 0.5 4.5 2.5 3.4 143 chr2R 22971490 intergenic not near genes chr2R 22971562 intergenic not near genes chr2R 22971633 intergenic not near genes chr2R_12_22970001 chr2R_22970001 RAL-138 946 chr2R 22988290 22988321 chr2R 22988395 22988427 11 103 9.0 15.0 12.0 0.8 137 chr2R 22988290 intron twi + chr2R 22988358 intron twi + chr2R 22988427 intron twi + chr2R_11_22985001 chr2R_22985001 RAL-138 947 chr2R 22995031 22995079 chr2R 22995152 22995202 12 122 0.5 6.0 3.2 2.9 171 chr2R 22995031 intron,intron twi +,CG9896 - chr2R 22995116 intron,intron twi +,CG9896 - chr2R 22995202 intron,intron twi +,CG9896 - chr2R_12_22995001 chr2R_22995001 RAL-138 948 chr2R 23030070 23030093 chr2R 23030286 23030309 11 216 3.0 5.5 4.2 2.1 239 chr2R 23030070 intron,intron twi +,CG42741 - chr2R 23030190 intron,intron twi +,CG42741 - chr2R 23030309 intron,intron twi +,CG42741 - chr2R_11_23030001 chr2R_23030001 RAL-138 949 chr2R 23061750 23061789 chr2R 23061868 23061908 25 117 9.5 20.5 15.0 1.6 158 chr2R 23061750 3` UTR l(2)06496 - chr2R 23061829 3` UTR l(2)06496 - chr2R 23061908 3` UTR l(2)06496 - chr2R_25_23060001 chr2R_23060001 RAL-138 950 chr2R 23158323 23158356 chr2R 23158423 23158456 19 100 21.5 19.5 20.5 0.9 133 chr2R 23158323 intron CG9899 + chr2R 23158390 intron CG9899 + chr2R 23158456 intron CG9899 + chr2R_19_23155001 chr2R_23155001 RAL-138 951 chr2R 23189999 23190019 chr2R 23190104 23190124 6 105 6.5 0.0 3.2 1.4 125 chr2R 23189999 intron CG34371 - chr2R 23190062 intron CG34371 - chr2R 23190124 intron CG34371 - chr2R_6_23190001 chr2R_23190001 RAL-138 952 chr2R 23331939 23331984 chr2R 23332351 23332396 7 412 2.0 5.5 3.8 1.5 457 chr2R 23331939 intergenic not near genes chr2R 23332168 intergenic not near genes chr2R 23332396 intergenic not near genes chr2R_7_23330001 chr2R_23330001 RAL-138 953 chr2R 23437214 23437235 chr2R 23437307 23437314 7 86 12.0 14.0 13.0 0.5 100 chr2R 23437214 intergenic not near genes chr2R 23437264 intergenic not near genes chr2R 23437314 intergenic not near genes chr2R_7_23435001 chr2R_23435001 RAL-138 954 chr2R 23452631 23452680 chr2R 23453655 23453702 13 1023 3.0 4.0 3.5 2.9 1071 chr2R 23452631 intron CG43795 + chr2R 23453166 intron CG43795 + chr2R 23453702 intron CG43795 + chr2R_13_23450001 chr2R_23450001 RAL-138 955 chr2R 23454612 23454655 chr2R 23454769 23454816 21 157 6.5 11.0 8.8 2.1 204 chr2R 23454612 intron CG43795 + chr2R 23454714 intron CG43795 + chr2R 23454816 intron CG43795 + chr2R_21_23450001 chr2R_23450001 RAL-138 956 chr2R 23467560 23467572 chr2R 23467714 23467725 5 152 16.5 9.0 12.8 0.4 165 chr2R 23467560 intron CG43795 + chr2R 23467642 intron CG43795 + chr2R 23467725 intron CG43795 + chr2R_5_23465001 chr2R_23465001 RAL-138 957 chr2R 23518187 23518211 chr2R 23518288 23518314 7 102 1.5 0.5 1.0 3.5 127 chr2R 23518187 intergenic not near genes chr2R 23518250 intergenic not near genes chr2R 23518314 intergenic not near genes chr2R_7_23515001 chr2R_23515001 RAL-138 958 chr2R 23529559 23529581 chr2R 23537159 23537165 412 7 7597 23.0 32.5 27.8 0.2 7606 chr2R 23529559 intron bw - chr2R 23533362 intron bw - chr2R 23537165 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-138 959 chr2R 23529584 23529589 chr2R 23537156 23537164 412 8 7581 22.0 28.0 25.0 0.3 7580 chr2R 23529584 intron bw - chr2R 23533374 intron bw - chr2R 23537164 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-138 960 chr2R 23529595 23529604 chr2R 23537149 23537149 412 6 7567 16.5 18.5 17.5 0.3 7554 chr2R 23529595 exon bw - chr2R 23533372 intron bw - chr2R 23537149 exon bw - chr2R_6_23530001 chr2R_23530001 RAL-138 961 chr2R 23607010 23607193 chr2R 23607116 23607311 48 110 2.5 2.5 2.5 13.7 301 chr2R 23607010 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607311 intron CG17664 - chr2R_48_23605001 chr2R_23605001 RAL-138 962 chr2R 23771251 23771307 chr2R 23771357 23771410 7 104 1.0 0.0 0.5 4.7 159 chr2R 23771251 intron CG9850 - chr2R 23771330 intron CG9850 - chr2R 23771410 intron CG9850 - chr2R_7_23770001 chr2R_23770001 RAL-138 963 chr2R 23776152 23776175 chr2R 23776232 23776266 8 91 3.5 4.0 3.8 1.7 114 chr2R 23776152 intron CG9850 - chr2R 23776209 intron CG9850 - chr2R 23776266 intron CG9850 - chr2R_8_23775001 chr2R_23775001 RAL-138 964 chr2R 23784447 23784506 chr2R 23784550 23784609 23 102 5.0 7.5 6.2 3.2 162 chr2R 23784447 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784609 intron CG9850 - chr2R_23_23780001 chr2R_23780001 RAL-138 965 chr2R 23819119 23819138 chr2R 23819238 23819258 5 119 6.0 4.0 5.0 0.8 139 chr2R 23819119 intergenic not near genes chr2R 23819188 intergenic not near genes chr2R 23819258 intergenic not near genes chr2R_5_23815001 chr2R_23815001 RAL-138 966 chr2R 23819886 23819891 chr2R 23820002 23820007 4 115 14.5 3.5 9.0 0.4 121 chr2R 23819886 intergenic CG5549 + chr2R 23819946 intergenic CG5549 + chr2R 23820007 intergenic CG5549 + chr2R_4_23815001 chr2R_23815001 RAL-138 967 chr2R 23819897 23819944 chr2R 23820012 23820059 9 114 5.5 5.0 5.2 1.5 162 chr2R 23819897 intergenic CG5549 + chr2R 23819978 intergenic CG5549 + chr2R 23820059 intergenic CG5549 + chr2R_9_23815001 chr2R_23815001 RAL-138 968 chr2R 23914301 23914331 chr2R 23921942 23921980 412 9 7646 5.0 6.0 5.5 1.4 7679 chr2R 23914301 exon kcc + chr2R 23918140 intron kcc + chr2R 23921980 exon kcc + chr2R_9_23915001 chr2R_23915001 RAL-138 969 chr2R 23994130 23994164 chr2R 23994228 23994265 10 98 7.0 4.0 5.5 1.5 135 chr2R 23994130 intron CG3860 - chr2R 23994198 intron CG3860 - chr2R 23994265 exon CG3860 - chr2R_10_23990001 chr2R_23990001 RAL-138 970 chr2R 24031355 24031412 chr2R 24031464 24031505 34 107 8.0 16.0 12.0 2.6 150 chr2R 24031355 5` UTR CG30172 - chr2R 24031430 intergenic CG30172 -,Chi - chr2R 24031505 intergenic Chi -,CG30172 - chr2R_34_24030001 chr2R_24030001 RAL-138 971 chr2R 24077909 24077926 chr2R 24078007 24078027 6 98 9.5 2.5 6.0 0.9 118 chr2R 24077909 3` UTR Mlp60A + chr2R 24077968 3` UTR Mlp60A + chr2R 24078027 3` UTR Mlp60A + chr2R_6_24075001 chr2R_24075001 RAL-138 972 chr2R 24077939 24077948 chr2R 24078039 24078048 4 100 7.0 6.5 6.8 0.5 109 chr2R 24077939 3` UTR Mlp60A + chr2R 24077994 3` UTR Mlp60A + chr2R 24078048 3` UTR Mlp60A + chr2R_4_24075001 chr2R_24075001 RAL-138 973 chr2R 24077950 24077953 chr2R 24078020 24078054 4 93 5.0 3.5 4.2 0.8 104 chr2R 24077950 3` UTR Mlp60A + chr2R 24078002 3` UTR Mlp60A + chr2R 24078054 3` UTR Mlp60A + chr2R_4_24075001 chr2R_24075001 RAL-138 974 chr2R 24147049 24147086 chr2R 24154652 24154653 412 10 7596 4.0 9.5 6.8 1.3 7604 chr2R 24147049 intron Dat + chr2R 24150851 intron Dat + chr2R 24154653 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-138 975 chr2R 24177212 24177264 chr2R 24184722 24184774 412 13 7510 5.0 1.0 3.0 3.2 7562 chr2R 24177212 3` UTR Nop60B + chr2R 24180993 intron Nop60B + chr2R 24184774 3` UTR Nop60B + chr2R_13_24180001 chr2R_24180001 RAL-138 976 chr2R 24204628 24204684 chr2R 24204814 24204834 29 182 8.0 5.0 6.5 3.9 206 chr2R 24204628 intron CG11406 - chr2R 24204731 intron CG11406 - chr2R 24204834 intron CG11406 - chr2R_29_24200001 chr2R_24200001 RAL-138 977 chr2R 24210375 24210430 chr2R 24210571 24210625 10 194 4.0 2.5 3.2 2.4 250 chr2R 24210375 intergenic not near genes chr2R 24210500 intergenic not near genes chr2R 24210625 intergenic not near genes chr2R_10_24210001 chr2R_24210001 RAL-138 978 chr2R 24228378 24228407 chr2R 24228483 24228490 9 101 11.0 8.0 9.5 0.9 112 chr2R 24228378 intron CG30419 - chr2R 24228434 intron CG30419 - chr2R 24228490 intron CG30419 - chr2R_9_24225001 chr2R_24225001 RAL-138 979 chr2R 24228410 24228430 chr2R 24228475 24228475 9 70 4.0 6.0 5.0 1.5 65 chr2R 24228410 intron CG30419 - chr2R 24228442 intron CG30419 - chr2R 24228475 intron CG30419 - chr2R_9_24225001 chr2R_24225001 RAL-138 980 chr2R 24287107 24287166 chr2R 24287209 24287268 48 101 15.0 10.0 12.5 3.6 161 chr2R 24287107 intron nvy + chr2R 24287188 intron nvy + chr2R 24287268 intron nvy + chr2R_48_24285001 chr2R_24285001 RAL-138 981 chr2R 24320165 24320181 chr2R 24320265 24320283 8 100 16.5 5.5 11.0 0.7 118 chr2R 24320165 intergenic not near genes chr2R 24320224 intergenic not near genes chr2R 24320283 intergenic not near genes chr2R_8_24320001 chr2R_24320001 RAL-138 982 chr2R 24320189 24320202 chr2R 24320263 24320266 9 87 7.5 5.0 6.2 1.2 77 chr2R 24320189 intergenic not near genes chr2R 24320228 intergenic not near genes chr2R 24320266 intergenic not near genes chr2R_9_24320001 chr2R_24320001 RAL-138 983 chr2R 24336147 24336180 chr2R 24336258 24336292 11 112 4.5 4.0 4.2 2.1 145 chr2R 24336147 intergenic CR44282 - chr2R 24336220 intergenic CR44282 - chr2R 24336292 intergenic CR44282 - chr2R_11_24335001 chr2R_24335001 RAL-138 984 chr2R 24353402 24353446 chr2R 24361789 24361824 roo 21 8385 6.0 7.0 6.5 2.8 8422 chr2R 24353402 intron,intron bs +,CR44811 - chr2R 24357613 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_21_24355001 chr2R_24355001 RAL-138 985 chr2R 24493065 24493119 chr2R 24493179 24493230 15 113 0.0 12.0 6.0 2.1 165 chr2R 24493065 intergenic CG13590 -,CG13589 - chr2R 24493148 intergenic CG13590 -,CG13589 - chr2R 24493230 intergenic CG13590 -,CG13589 - chr2R_15_24490001 chr2R_24490001 RAL-138 986 chr2R 24636882 24636905 chr2R 24636992 24637016 6 110 11.5 0.0 5.8 0.9 134 chr2R 24636882 intron CG13594 - chr2R 24636949 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_6_24635001 chr2R_24635001 RAL-138 987 chr2R 24647552 24647616 chr2R 24655148 24655198 412 7 7587 0.0 3.0 1.5 2.8 7646 chr2R 24647552 intergenic not near genes chr2R 24651375 intergenic not near genes chr2R 24655198 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-138 988 chr2R 24707737 24707782 chr2R 24707982 24707997 10 239 5.5 6.5 6.0 1.4 260 chr2R 24707737 intron Mid1 - chr2R 24707867 intron Mid1 - chr2R 24707997 intron Mid1 - chr2R_10_24705001 chr2R_24705001 RAL-138 989 chr2R 24727867 24727874 chr2R 24735397 24735407 mdg1 4 7531 13.5 17.5 15.5 0.2 7540 chr2R 24727867 intron Mid1 - chr2R 24731637 intron Mid1 - chr2R 24735407 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-138 990 chr2R 24727877 24727918 chr2R 24735395 24735423 mdg1 30 7521 4.0 16.0 10.0 2.7 7546 chr2R 24727877 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735423 intron Mid1 - chr2R_30_24730001 chr2R_24730001 RAL-138 991 chr2R 24737123 24737174 chr2R 24737265 24737313 45 141 12.0 12.0 12.0 3.5 190 chr2R 24737123 intergenic Mid1 - chr2R 24737218 intergenic not near genes chr2R 24737313 intergenic not near genes chr2R_45_24735001 chr2R_24735001 RAL-138 992 chr2R 24763599 24763608 chr2R 24765593 24765609 G2 12 1997 28.0 20.0 24.0 0.5 2010 chr2R 24763599 exon CG3894 + chr2R 24764604 intron CG3894 + chr2R 24765609 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-138 993 chr2R 24763609 24763612 chr2R 24765589 24765596 G2 4 1988 28.0 17.0 22.5 0.2 1987 chr2R 24763609 exon CG3894 + chr2R 24764602 intron CG3894 + chr2R 24765596 exon CG3894 + chr2R_4_24760001 chr2R_24760001 RAL-138 994 chr2R 24763613 24763643 chr2R 24765586 24765644 G2 37 1985 17.0 16.0 16.5 2.1 2031 chr2R 24763613 exon CG3894 + chr2R 24764628 intron CG3894 + chr2R 24765644 exon CG3894 + chr2R_37_24760001 chr2R_24760001 RAL-138 995 chr2R 24801686 24801689 chr2R 24801912 24801935 6 232 55.5 79.5 67.5 0.1 249 chr2R 24801686 intergenic not near genes chr2R 24801810 intergenic not near genes chr2R 24801935 intergenic not near genes chr2R_6_24800001 chr2R_24800001 RAL-138 996 chr2R 24801682 24801712 chr2R 24801936 24801958 18 235 64.0 72.5 68.2 0.3 276 chr2R 24801682 intergenic not near genes chr2R 24801820 intergenic not near genes chr2R 24801958 intergenic not near genes chr2R_18_24800001 chr2R_24800001 RAL-138 997 chr2R 24861696 24861723 chr2R 24861805 24861810 9 107 6.5 5.0 5.8 1.3 114 chr2R 24861696 intergenic not near genes chr2R 24861753 intergenic not near genes chr2R 24861810 intergenic not near genes chr2R_9_24860001 chr2R_24860001 RAL-138 998 chr2R 24861725 24861737 chr2R 24861803 24861830 6 92 3.5 4.5 4.0 1.2 105 chr2R 24861725 intergenic not near genes chr2R 24861778 intergenic not near genes chr2R 24861830 intergenic not near genes chr2R_6_24860001 chr2R_24860001 RAL-138 999 chr2R 25014527 25014572 chr2R 25014618 25014670 13 100 4.0 4.0 4.0 2.6 143 chr2R 25014527 intron uzip + chr2R 25014598 intron uzip + chr2R 25014670 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-138 1000 chr2R 25018320 25018366 chr2R 25018446 25018492 16 125 4.5 3.0 3.8 3.3 172 chr2R 25018320 intron uzip + chr2R 25018406 intron uzip + chr2R 25018492 intron uzip + chr2R_16_25015001 chr2R_25015001 RAL-138 1001 chr2R 25022627 25022673 chr2R 25022736 25022782 11 109 1.5 4.5 3.0 2.8 155 chr2R 25022627 intron uzip + chr2R 25022704 intron uzip + chr2R 25022782 intron uzip + chr2R_11_25020001 chr2R_25020001 RAL-138 1002 chr2R 25026383 25026430 chr2R 25026507 25026544 6 122 1.5 4.5 3.0 1.5 161 chr2R 25026383 intron uzip + chr2R 25026464 intron uzip + chr2R 25026544 intron uzip + chr2R_6_25025001 chr2R_25025001 RAL-138 1003 chr2R 25099239 25099258 chr2R 25099318 25099321 5 73 11.0 15.5 13.2 0.4 82 chr2R 25099239 intron lov - chr2R 25099280 intron lov - chr2R 25099321 intron lov - chr2R_5_25095001 chr2R_25095001 RAL-138 1004 chr2R 25101249 25101301 chr2R 25101376 25101428 30 127 9.5 6.5 8.0 3.3 179 chr2R 25101249 intron lov - chr2R 25101338 intron lov - chr2R 25101428 intron lov - chr2R_30_25100001 chr2R_25100001 RAL-138 1005 chr2R 25104753 25104803 chr2R 25104902 25104953 12 149 6.0 5.5 5.8 1.8 200 chr2R 25104753 intron lov - chr2R 25104853 intron lov - chr2R 25104953 intron lov - chr2R_12_25100001 chr2R_25100001 RAL-138 1006 chr2R 25130986 25131035 chr2R 25131086 25131137 11 101 5.0 3.5 4.2 2.1 151 chr2R 25130986 intron lov - chr2R 25131062 intron lov - chr2R 25131137 intron lov - chr2R_11_25130001 chr2R_25130001 RAL-138 1007 chr2R 25167678 25167700 chr2R 25167777 25167807 4 104 2.0 2.5 2.2 1.2 129 chr2R 25167678 5` UTR CG34038 + chr2R 25167742 5` UTR CG34038 + chr2R 25167807 5` UTR CG34038 + chr2R_4_25165001 chr2R_25165001 RAL-138 1008 chr2R 25234750 25234771 chr2R 25234855 25234858 4 100 2.0 2.5 2.2 1.2 108 chr2R 25234750 intron CG9380 - chr2R 25234804 intron CG9380 - chr2R 25234858 intron CG9380 - chr2R_4_25230001 chr2R_25230001 RAL-138 1009 chr3L 68969 69007 chr3L 69080 69118 11 112 0.5 3.0 1.8 3.9 149 chr3L 68969 3` UTR Lsp1gamma + chr3L 69044 intergenic Lsp1gamma +,CR44510 + chr3L 69118 intergenic CR44510 +,Lsp1gamma + chr3L_11_65001 chr3L_65001 RAL-138 1010 chr3L 93764 93815 chr3L 93870 93871 9 90 5.0 5.0 5.0 1.5 107 chr3L 93764 intergenic not near genes chr3L 93818 intergenic not near genes chr3L 93871 intergenic not near genes chr3L_9_90001 chr3L_90001 RAL-138 1011 chr3L 105993 106026 chr3L 106146 106180 4 152 0.0 3.0 1.5 1.6 187 chr3L 105993 intergenic not near genes chr3L 106086 intergenic not near genes chr3L 106180 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-138 1012 chr3L 110192 110228 chr3L 119383 119420 roo 9 9192 1.0 4.0 2.5 2.6 9228 chr3L 110192 intergenic not near genes chr3L 114806 intergenic not near genes chr3L 119420 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-138 1013 chr3L 165659 165707 chr3L 165822 165870 5 163 2.0 3.5 2.8 1.3 211 chr3L 165659 intron p130CAS + chr3L 165764 intron p130CAS + chr3L 165870 intron p130CAS + chr3L_5_165001 chr3L_165001 RAL-138 1014 chr3L 402674 402716 chr3L 409752 409794 297 15 7074 4.0 10.5 7.2 1.8 7120 chr3L 402674 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409794 intergenic not near genes chr3L_15_405001 chr3L_405001 RAL-138 1015 chr3L 415943 415969 chr3L 416052 416078 6 104 4.5 5.5 5.0 1.0 135 chr3L 415943 intergenic not near genes chr3L 416010 intergenic not near genes chr3L 416078 intergenic not near genes chr3L_6_415001 chr3L_415001 RAL-138 1016 chr3L 415974 416165 chr3L 416051 416278 17 108 3.0 5.5 4.2 3.3 304 chr3L 415974 intergenic not near genes chr3L 416126 intergenic not near genes chr3L 416278 intergenic not near genes chr3L_17_415001 chr3L_415001 RAL-138 1017 chr3L 437133 437154 chr3L 437261 437278 4 132 2.5 7.0 4.8 0.7 145 chr3L 437133 intron klar - chr3L 437206 intron klar - chr3L 437278 intron klar - chr3L_4_435001 chr3L_435001 RAL-138 1018 chr3L 438829 438873 chr3L 438934 438978 10 105 3.5 3.5 3.5 2.2 149 chr3L 438829 intron klar - chr3L 438904 intron klar - chr3L 438978 intron klar - chr3L_10_435001 chr3L_435001 RAL-138 1019 chr3L 445550 445583 chr3L 445651 445687 13 101 5.0 8.0 6.5 1.7 137 chr3L 445550 exon klar - chr3L 445618 intron klar - chr3L 445687 intron klar - chr3L_13_445001 chr3L_445001 RAL-138 1020 chr3L 456190 456226 chr3L 456294 456330 8 104 4.0 3.5 3.8 1.7 140 chr3L 456190 intron klar - chr3L 456260 intron klar - chr3L 456330 intron klar - chr3L_8_455001 chr3L_455001 RAL-138 1021 chr3L 459960 460009 chr3L 460055 460111 9 98 3.0 3.5 3.2 2.1 151 chr3L 459960 intron klar - chr3L 460036 intron klar - chr3L 460111 intron klar - chr3L_9_460001 chr3L_460001 RAL-138 1022 chr3L 467728 467774 chr3L 467839 467885 6 108 2.5 4.0 3.2 1.4 157 chr3L 467728 intron klar - chr3L 467806 intron klar - chr3L 467885 intron klar - chr3L_6_465001 chr3L_465001 RAL-138 1023 chr3L 514985 515014 chr3L 515100 515148 5 131 1.5 1.0 1.2 2.3 163 chr3L 514985 intron klar - chr3L 515066 intron klar - chr3L 515148 intron klar - chr3L_5_515001 chr3L_515001 RAL-138 1024 chr3L 523623 523675 chr3L 523774 523825 6 151 2.0 1.5 1.8 2.1 202 chr3L 523623 intron klar - chr3L 523724 intron klar - chr3L 523825 intron klar - chr3L_6_520001 chr3L_520001 RAL-138 1025 chr3L 526758 526805 chr3L 526860 526881 7 93 2.5 2.5 2.5 2.0 123 chr3L 526758 intron klar - chr3L 526820 intron klar - chr3L 526881 intron klar - chr3L_7_525001 chr3L_525001 RAL-138 1026 chr3L 561456 561489 chr3L 561558 561591 8 102 5.5 0.0 2.8 2.1 135 chr3L 561456 intron hipk + chr3L 561524 intron hipk + chr3L 561591 intron hipk + chr3L_8_560001 chr3L_560001 RAL-138 1027 chr3L 659418 659443 chr3L 659517 659545 6 100 0.0 7.5 3.8 1.2 127 chr3L 659418 intergenic not near genes chr3L 659482 intergenic not near genes chr3L 659545 intergenic not near genes chr3L_6_655001 chr3L_655001 RAL-138 1028 chr3L 685228 685243 chr3L 685320 685350 10 94 14.0 17.0 15.5 0.6 122 chr3L 685228 5` UTR ebd1 - chr3L 685289 5` UTR ebd1 - chr3L 685350 5` UTR ebd1 - chr3L_10_685001 chr3L_685001 RAL-138 1029 chr3L 685251 685252 chr3L 685320 685341 5 90 9.5 17.0 13.2 0.4 90 chr3L 685251 5` UTR ebd1 - chr3L 685296 5` UTR ebd1 - chr3L 685341 5` UTR ebd1 - chr3L_5_685001 chr3L_685001 RAL-138 1030 chr3L 695145 695181 chr3L 695402 695460 10 266 3.5 0.0 1.8 3.6 315 chr3L 695145 intron CG13894 - chr3L 695302 intron CG13894 - chr3L 695460 intron CG13894 - chr3L_10_695001 chr3L_695001 RAL-138 1031 chr3L 748187 748242 chr3L 748290 748346 11 104 4.0 2.5 3.2 2.6 159 chr3L 748187 intron hng3 - chr3L 748266 intron hng3 - chr3L 748346 intron hng3 - chr3L_11_745001 chr3L_745001 RAL-138 1032 chr3L 789889 789945 chr3L 790398 790456 roo 9 510 4.0 0.0 2.0 3.0 567 chr3L 789889 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790456 intergenic not near genes chr3L_9_790001 chr3L_790001 RAL-138 1033 chr3L 822064 822091 chr3L 822169 822176 5 100 4.5 2.5 3.5 1.1 112 chr3L 822064 intergenic not near genes chr3L 822120 intergenic not near genes chr3L 822176 intergenic not near genes chr3L_5_820001 chr3L_820001 RAL-138 1034 chr3L 857979 857985 chr3L 866485 866491 Tirant 6 8506 17.5 7.5 12.5 0.4 8512 chr3L 857979 intergenic not near genes chr3L 862235 intergenic not near genes chr3L 866491 intergenic CG12502 + chr3L_6_860001 chr3L_860001 RAL-138 1035 chr3L 857991 858030 chr3L 866478 866491 Tirant 24 8484 7.5 6.5 7.0 3.0 8500 chr3L 857991 intergenic not near genes chr3L 862241 intergenic not near genes chr3L 866491 intergenic CG12502 + chr3L_24_860001 chr3L_860001 RAL-138 1036 chr3L 901428 901443 chr3L 901511 901511 5 92 4.0 4.5 4.2 1.0 83 chr3L 901428 intergenic not near genes chr3L 901470 intergenic not near genes chr3L 901511 intergenic not near genes chr3L_5_900001 chr3L_900001 RAL-138 1037 chr3L 925157 925204 chr3L 932608 932655 mdg1 13 7451 1.5 3.0 2.2 4.1 7498 chr3L 925157 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932655 intron Glut1 + chr3L_13_925001 chr3L_925001 RAL-138 1038 chr3L 939752 939796 chr3L 940898 940942 jockey 20 1145 6.5 10.0 8.2 2.2 1190 chr3L 939752 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940942 intron Glut1 + chr3L_20_940001 chr3L_940001 RAL-138 1039 chr3L 948940 948988 chr3L 949339 949347 5 389 6.5 7.5 7.0 0.6 407 chr3L 948940 intron Glut1 + chr3L 949144 intron Glut1 + chr3L 949347 intron Glut1 + chr3L_5_945001 chr3L_945001 RAL-138 1040 chr3L 957605 957628 chr3L 957716 957739 5 111 4.0 3.0 3.5 1.1 134 chr3L 957605 intron Glut1 + chr3L 957672 intron Glut1 + chr3L 957739 intron Glut1 + chr3L_5_955001 chr3L_955001 RAL-138 1041 chr3L 964660 964674 chr3L 965130 965135 4 466 6.5 5.0 5.8 0.6 475 chr3L 964660 intron Glut1 + chr3L 964898 intron Glut1 + chr3L 965135 intron Glut1 + chr3L_4_960001 chr3L_960001 RAL-138 1042 chr3L 964677 964692 chr3L 965118 965162 5 457 4.5 3.5 4.0 1.0 485 chr3L 964677 intron Glut1 + chr3L 964920 intron Glut1 + chr3L 965162 intron Glut1 + chr3L_5_960001 chr3L_960001 RAL-138 1043 chr3L 1001845 1001876 chr3L 1001946 1001958 10 96 6.0 11.0 8.5 1.1 113 chr3L 1001845 intron trio - chr3L 1001902 intron trio - chr3L 1001958 intron trio - chr3L_10_1000001 chr3L_1000001 RAL-138 1044 chr3L 1011204 1011223 chr3L 1011323 1011341 8 118 4.5 5.5 5.0 1.3 137 chr3L 1011204 intron trio - chr3L 1011272 intron trio - chr3L 1011341 intron trio - chr3L_8_1010001 chr3L_1010001 RAL-138 1045 chr3L 1021568 1021630 chr3L 1021669 1021714 17 84 4.0 4.5 4.2 3.3 146 chr3L 1021568 intron trio - chr3L 1021641 intron trio - chr3L 1021714 intron trio - chr3L_17_1020001 chr3L_1020001 RAL-138 1046 chr3L 1154119 1154161 chr3L 1163294 1163336 roo 20 9175 2.5 8.0 5.2 3.2 9217 chr3L 1154119 intron bab2 - chr3L 1158728 intron bab2 - chr3L 1163336 intron bab2 - chr3L_20_1155001 chr3L_1155001 RAL-138 1047 chr3L 1194516 1194546 chr3L 1194636 1194666 6 120 3.0 2.5 2.8 1.6 150 chr3L 1194516 intergenic LysX - chr3L 1194591 intergenic LysX - chr3L 1194666 intergenic LysX - chr3L_6_1190001 chr3L_1190001 RAL-138 1048 chr3L 1219576 1219622 chr3L 1227327 1227351 412 40 7750 6.0 11.5 8.8 4.1 7775 chr3L 1219576 intron mwh + chr3L 1223464 intron mwh + chr3L 1227351 intron mwh + chr3L_40_1220001 chr3L_1220001 RAL-138 1049 chr3L 1231850 1231862 chr3L 15118832 15118859 4 13886991 48.5 20.5 34.5 0.1 13887009 chr3L 1231850 exon mwh + chr3L 8175354 exon RecQ4 - chr3L 15118859 exon Cep135 + chr3L_4_8175001 chr3L_8175001 RAL-138 1050 chr3L 1275078 1275116 chr3L 1275174 1275220 6 96 7.5 3.0 5.2 1.0 142 chr3L 1275078 intergenic not near genes chr3L 1275149 intergenic not near genes chr3L 1275220 intergenic not near genes chr3L_6_1275001 chr3L_1275001 RAL-138 1051 chr3L 1324602 1324658 chr3L 1324704 1324761 16 102 5.0 5.5 5.2 2.6 159 chr3L 1324602 intron Myo61F + chr3L 1324682 intron Myo61F + chr3L 1324761 intron Myo61F + chr3L_16_1320001 chr3L_1320001 RAL-138 1052 chr3L 1361299 1361314 chr3L 1361366 1361380 6 70 6.0 6.5 6.2 0.8 81 chr3L 1361299 intron Ptp61F - chr3L 1361340 intron Ptp61F - chr3L 1361380 intron Ptp61F - chr3L_6_1360001 chr3L_1360001 RAL-138 1053 chr3L 1396735 1396755 chr3L 1396840 1396860 6 102 4.0 4.5 4.2 1.2 125 chr3L 1396735 intron Ptp61F - chr3L 1396798 intron Ptp61F - chr3L 1396860 intron Ptp61F - chr3L_6_1395001 chr3L_1395001 RAL-138 1054 chr3L 1415751 1415806 chr3L 1415858 1415893 16 100 2.0 5.0 3.5 3.6 142 chr3L 1415751 intron Ptp61F - chr3L 1415822 intron Ptp61F - chr3L 1415893 intron Ptp61F - chr3L_16_1415001 chr3L_1415001 RAL-138 1055 chr3L 1424755 1424762 chr3L 1430019 1430033 Rt1a 4 5270 0.0 12.0 6.0 0.6 5278 chr3L 1424755 intron Ptp61F - chr3L 1427394 intron Ptp61F - chr3L 1430033 intron Ptp61F - chr3L_4_1425001 chr3L_1425001 RAL-138 1056 chr3L 1473219 1473233 chr3L 1473320 1473330 4 100 4.5 7.0 5.8 0.6 111 chr3L 1473219 5` UTR Ptp61F - chr3L 1473274 5` UTR Ptp61F - chr3L 1473330 5` UTR Ptp61F - chr3L_4_1470001 chr3L_1470001 RAL-138 1057 chr3L 1485712 1485743 chr3L 1486908 1486939 1360 16 1193 7.0 23.0 15.0 1.0 1227 chr3L 1485712 intron stet - chr3L 1486326 intron stet - chr3L 1486939 intron stet - chr3L_16_1485001 chr3L_1485001 RAL-138 1058 chr3L 1505978 1506022 chr3L 1513593 1513644 17.6 14 7621 6.5 2.0 4.2 2.7 7666 chr3L 1505978 intron,intron Psa +,cue - chr3L 1509811 intron,intron Psa +,cue - chr3L 1513644 intron,intron Psa +,cue - chr3L_14_1505001 chr3L_1505001 RAL-138 1059 chr3L 1536849 1536886 chr3L 1536943 1536995 21 104 10.5 8.5 9.5 2.0 146 chr3L 1536849 intergenic CG12091 -,CG7852 + chr3L 1536922 intergenic CG12091 -,CG7852 + chr3L 1536995 intergenic CG7852 +,CG12091 - chr3L_21_1535001 chr3L_1535001 RAL-138 1060 chr3L 1571461 1571495 chr3L 1571571 1571605 11 110 3.5 4.0 3.8 2.3 144 chr3L 1571461 intron CG12004 + chr3L 1571533 intron CG12004 + chr3L 1571605 intron CG12004 + chr3L_11_1570001 chr3L_1570001 RAL-138 1061 chr3L 1585910 1585931 chr3L 1586015 1586037 4 106 1.0 1.5 1.2 1.8 127 chr3L 1585910 intron CG13917 + chr3L 1585974 intron CG13917 + chr3L 1586037 intron CG13917 + chr3L_4_1585001 chr3L_1585001 RAL-138 1062 chr3L 1726145 1726182 chr3L 1726248 1726303 17 116 9.0 8.0 8.5 1.8 158 chr3L 1726145 intron drpr - chr3L 1726224 intron drpr - chr3L 1726303 intron drpr - chr3L_17_1725001 chr3L_1725001 RAL-138 1063 chr3L 1726590 1726645 chr3L 1726691 1726750 16 103 5.0 4.5 4.8 2.8 160 chr3L 1726590 intron drpr - chr3L 1726670 intron drpr - chr3L 1726750 intron drpr - chr3L_16_1725001 chr3L_1725001 RAL-138 1064 chr3L 1740848 1740882 chr3L 1741102 1741150 pogo 6 263 4.0 7.5 5.8 0.9 302 chr3L 1740848 intron Gk + chr3L 1740999 intron Gk + chr3L 1741150 intron Gk + chr3L_6_1740001 chr3L_1740001 RAL-138 1065 chr3L 1853021 1853049 chr3L 1853130 1853158 11 109 5.5 3.5 4.5 2.0 137 chr3L 1853021 intron CG13936 - chr3L 1853090 intron CG13936 - chr3L 1853158 intron CG13936 - chr3L_11_1850001 chr3L_1850001 RAL-138 1066 chr3L 1882341 1882374 chr3L 1882462 1882494 6 120 2.0 1.5 1.8 2.1 153 chr3L 1882341 intron CG13937 - chr3L 1882418 intron CG13937 - chr3L 1882494 intron CG13937 - chr3L_6_1880001 chr3L_1880001 RAL-138 1067 chr3L 1916171 1916218 chr3L 1916272 1916317 10 101 1.5 1.0 1.2 4.5 146 chr3L 1916171 intergenic not near genes chr3L 1916244 intergenic not near genes chr3L 1916317 intergenic not near genes chr3L_10_1915001 chr3L_1915001 RAL-138 1068 chr3L 1922459 1922469 chr3L 1922535 1922538 6 82 15.5 7.5 11.5 0.5 79 chr3L 1922459 intron Dbx + chr3L 1922498 intron Dbx + chr3L 1922538 intron Dbx + chr3L_6_1920001 chr3L_1920001 RAL-138 1069 chr3L 1924938 1924975 chr3L 1925100 1925138 30 162 8.0 6.5 7.2 3.7 200 chr3L 1924938 exon Dbx + chr3L 1925038 intron Dbx + chr3L 1925138 intron Dbx + chr3L_30_1925001 chr3L_1925001 RAL-138 1070 chr3L 2021406 2021425 chr3L 2021501 2021519 6 101 4.0 3.0 3.5 1.3 113 chr3L 2021406 exon CG42357 - chr3L 2021462 exon CG42357 - chr3L 2021519 exon CG42357 - chr3L_6_2020001 chr3L_2020001 RAL-138 1071 chr3L 2108237 2108282 chr3L 2113466 2113511 copia 21 5229 4.0 11.5 7.8 2.4 5274 chr3L 2108237 intron sls - chr3L 2110874 intron sls - chr3L 2113511 intron sls - chr3L_21_2110001 chr3L_2110001 RAL-138 1072 chr3L 2139186 2139233 chr3L 2139288 2139339 21 102 6.0 9.0 7.5 2.5 153 chr3L 2139186 intron zormin - chr3L 2139262 intron zormin - chr3L 2139339 intron zormin - chr3L_21_2135001 chr3L_2135001 RAL-138 1073 chr3L 2187580 2187600 chr3L 2187688 2187707 6 108 17.0 13.0 15.0 0.4 127 chr3L 2187580 exon CG13810 + chr3L 2187644 exon CG13810 + chr3L 2187707 intergenic CG13810 + chr3L_6_2185001 chr3L_2185001 RAL-138 1074 chr3L 2187601 2187611 chr3L 2187686 2187719 14 103 13.5 12.0 12.8 1.0 118 chr3L 2187601 exon CG13810 + chr3L 2187660 3` UTR CG13810 + chr3L 2187719 intergenic CG13810 + chr3L_14_2185001 chr3L_2185001 RAL-138 1075 chr3L 2187616 2187621 chr3L 2187724 2187729 4 108 10.0 24.0 17.0 0.2 113 chr3L 2187616 exon CG13810 + chr3L 2187672 3` UTR CG13810 + chr3L 2187729 intergenic CG13810 + chr3L_4_2185001 chr3L_2185001 RAL-138 1076 chr3L 2188413 2188426 chr3L 2188542 2188575 6 141 14.5 8.0 11.2 0.5 162 chr3L 2188413 intergenic not near genes chr3L 2188494 intergenic not near genes chr3L 2188575 intergenic not near genes chr3L_6_2185001 chr3L_2185001 RAL-138 1077 chr3L 2188431 2188443 chr3L 2188540 2188567 8 125 6.5 7.5 7.0 1.0 136 chr3L 2188431 intergenic not near genes chr3L 2188499 intergenic not near genes chr3L 2188567 intergenic not near genes chr3L_8_2185001 chr3L_2185001 RAL-138 1078 chr3L 2277958 2278010 chr3L 2278171 2278231 11 218 2.5 3.0 2.8 2.9 273 chr3L 2277958 3` UTR yellow-g2 + chr3L 2278094 intergenic yellow-g2 + chr3L 2278231 intergenic yellow-g2 + chr3L_11_2275001 chr3L_2275001 RAL-138 1079 chr3L 2307985 2308031 chr3L 2308116 2308162 5 130 3.0 5.0 4.0 1.0 177 chr3L 2307985 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308162 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-138 1080 chr3L 2308518 2308561 chr3L 2308637 2308670 9 113 2.0 1.5 1.8 3.2 152 chr3L 2308518 intergenic not near genes chr3L 2308594 intergenic not near genes chr3L 2308670 intergenic not near genes chr3L_9_2305001 chr3L_2305001 RAL-138 1081 chr3L 2411310 2411343 chr3L 2411415 2411448 10 105 1.5 1.5 1.5 4.0 138 chr3L 2411310 intron CG45186 + chr3L 2411379 intron CG45186 + chr3L 2411448 intron CG45186 + chr3L_10_2410001 chr3L_2410001 RAL-138 1082 chr3L 2447480 2447534 chr3L 2456661 2456715 roo 27 9177 6.5 8.0 7.2 3.3 9235 chr3L 2447480 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456715 intron CG45186 + chr3L_27_2450001 chr3L_2450001 RAL-138 1083 chr3L 2490745 2490748 chr3L 2490846 2490850 5 102 1.5 6.5 4.0 1.0 105 chr3L 2490745 intron,intron CG45186 +,CG1146 + chr3L 2490798 intron,intron CG45186 +,CG1146 + chr3L 2490850 intron,intron CG45186 +,CG1146 + chr3L_5_2490001 chr3L_2490001 RAL-138 1084 chr3L 2506344 2506404 chr3L 2506576 2506605 16 228 1.5 3.0 2.2 5.0 261 chr3L 2506344 3` UTR Spn - chr3L 2506474 3` UTR Spn - chr3L 2506605 3` UTR Spn - chr3L_16_2505001 chr3L_2505001 RAL-138 1085 chr3L 2533651 2533680 chr3L 2533732 2533779 12 96 11.0 8.0 9.5 1.1 128 chr3L 2533651 intron Spn - chr3L 2533715 intron Spn - chr3L 2533779 intron Spn - chr3L_12_2530001 chr3L_2530001 RAL-138 1086 chr3L 2534610 2534624 chr3L 2534718 2534732 7 108 0.0 16.5 8.2 0.8 122 chr3L 2534610 intron Spn - chr3L 2534671 intron Spn - chr3L 2534732 exon Spn - chr3L_7_2530001 chr3L_2530001 RAL-138 1087 chr3L 2534625 2534636 chr3L 2534710 2534739 4 101 0.0 13.5 6.8 0.5 114 chr3L 2534625 intron Spn - chr3L 2534682 intron Spn - chr3L 2534739 exon Spn - chr3L_4_2530001 chr3L_2530001 RAL-138 1088 chr3L 2561507 2561556 chr3L 2561609 2561658 34 102 6.5 10.5 8.5 3.6 151 chr3L 2561507 intron msn - chr3L 2561582 intron msn - chr3L 2561658 intron msn - chr3L_34_2560001 chr3L_2560001 RAL-138 1089 chr3L 2581882 2581913 chr3L 2581994 2582031 14 118 1.5 3.5 2.5 4.0 149 chr3L 2581882 intron msn - chr3L 2581956 intron msn - chr3L 2582031 intron msn - chr3L_14_2580001 chr3L_2580001 RAL-138 1090 chr3L 2595560 2595569 chr3L 2595671 2595680 8 111 14.5 10.0 12.2 0.6 120 chr3L 2595560 3` UTR dos + chr3L 2595620 intergenic dos +,CG16984 +,CG12182 - chr3L 2595680 intergenic dos +,CG16984 +,CG12182 - chr3L_8_2595001 chr3L_2595001 RAL-138 1091 chr3L 2595570 2595610 chr3L 2595670 2595721 17 110 4.0 9.0 6.5 2.3 151 chr3L 2595570 3` UTR dos + chr3L 2595646 intergenic dos +,CG16984 +,CG12182 - chr3L 2595721 intergenic CG16984 +,CG12182 -,dos + chr3L_17_2595001 chr3L_2595001 RAL-138 1092 chr3L 2626061 2626091 chr3L 2626187 2626217 11 124 6.0 4.5 5.2 1.8 156 chr3L 2626061 intron Pxn - chr3L 2626139 intron Pxn - chr3L 2626217 intron Pxn - chr3L_11_2625001 chr3L_2625001 RAL-138 1093 chr3L 2683921 2683975 chr3L 2684022 2684076 25 99 7.5 6.0 6.8 3.2 155 chr3L 2683921 intron Fife - chr3L 2683998 intron Fife - chr3L 2684076 intron Fife - chr3L_25_2680001 chr3L_2680001 RAL-138 1094 chr3L 2719520 2719554 chr3L 2719647 2719681 12 127 5.5 4.5 5.0 2.0 161 chr3L 2719520 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719681 3` UTR Mrtf - chr3L_12_2715001 chr3L_2715001 RAL-138 1095 chr3L 2772285 2772332 chr3L 2772517 2772564 16 229 10.5 12.0 11.2 1.3 279 chr3L 2772285 5` UTR CG9977 - chr3L 2772424 intergenic CG9977 -,CG12093 - chr3L 2772564 3` UTR CG12093 - chr3L_16_2770001 chr3L_2770001 RAL-138 1096 chr3L 2795942 2795979 chr3L 2796060 2796096 18 117 9.0 7.0 8.0 2.0 154 chr3L 2795942 intron CG43444 - chr3L 2796019 intron CG43444 - chr3L 2796096 intron CG43444 - chr3L_18_2795001 chr3L_2795001 RAL-138 1097 chr3L 2828655 2828664 chr3L 2828759 2828768 5 104 22.5 11.5 17.0 0.3 113 chr3L 2828655 intron CG43444 - chr3L 2828712 intron CG43444 - chr3L 2828768 intron CG43444 - chr3L_5_2825001 chr3L_2825001 RAL-138 1098 chr3L 2828667 2828685 chr3L 2828755 2828789 13 101 14.5 11.0 12.8 0.9 122 chr3L 2828667 intron CG43444 - chr3L 2828728 intron CG43444 - chr3L 2828789 intron CG43444 - chr3L_13_2825001 chr3L_2825001 RAL-138 1099 chr3L 2828686 2828701 chr3L 2828789 2828803 7 104 10.5 20.0 15.2 0.4 117 chr3L 2828686 intron CG43444 - chr3L 2828744 intron CG43444 - chr3L 2828803 intron CG43444 - chr3L_7_2825001 chr3L_2825001 RAL-138 1100 chr3L 2863772 2863792 chr3L 2863876 2863897 6 105 0.5 0.5 0.5 4.0 125 chr3L 2863772 intron CG43444 - chr3L 2863834 intron CG43444 - chr3L 2863897 intron CG43444 - chr3L_6_2860001 chr3L_2860001 RAL-138 1101 chr3L 2882090 2882140 chr3L 2882191 2882241 11 101 3.5 1.5 2.5 3.1 151 chr3L 2882090 intergenic not near genes chr3L 2882166 intergenic not near genes chr3L 2882241 intergenic not near genes chr3L_11_2880001 chr3L_2880001 RAL-138 1102 chr3L 2906046 2906075 chr3L 2906154 2906186 5 111 5.0 6.5 5.8 0.7 140 chr3L 2906046 intron Shab + chr3L 2906116 intron Shab + chr3L 2906186 intron Shab + chr3L_5_2905001 chr3L_2905001 RAL-138 1103 chr3L 2906082 2906092 chr3L 2906152 2906204 5 103 4.0 6.0 5.0 0.8 122 chr3L 2906082 intron Shab + chr3L 2906143 intron Shab + chr3L 2906204 intron Shab + chr3L_5_2905001 chr3L_2905001 RAL-138 1104 chr3L 2927820 2927866 chr3L 2936122 2936167 Tirant 6 8301 7.0 4.5 5.8 0.9 8347 chr3L 2927820 intron Shab + chr3L 2931994 intron Shab + chr3L 2936167 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-138 1105 chr3L 3040310 3040327 chr3L 3042124 3042135 S-element 5 1812 11.0 0.0 5.5 0.8 1825 chr3L 3040310 3` UTR CG2162 + chr3L 3041222 intergenic not near genes chr3L 3042135 intergenic Jafrac2 + chr3L_5_3040001 chr3L_3040001 RAL-138 1106 chr3L 3051718 3051745 chr3L 3051985 3052012 pogo 16 267 14.5 5.0 9.8 1.5 294 chr3L 3051718 3` UTR CG32485 + chr3L 3051865 intergenic CG32485 + chr3L 3052012 intergenic CG32485 + chr3L_16_3050001 chr3L_3050001 RAL-138 1107 chr3L 3061284 3061317 chr3L 3069867 3069914 Tirant 13 8591 9.0 10.0 9.5 1.2 8630 chr3L 3061284 intron CG32486 - chr3L 3065599 intron CG32486 - chr3L 3069914 intron CG32486 - chr3L_13_3065001 chr3L_3065001 RAL-138 1108 chr3L 3102794 3102850 chr3L 3102905 3102936 13 103 4.0 7.0 5.5 2.0 142 chr3L 3102794 intron Cht7 - chr3L 3102865 intron Cht7 - chr3L 3102936 intron Cht7 - chr3L_13_3100001 chr3L_3100001 RAL-138 1109 chr3L 3128169 3128216 chr3L 3128279 3128327 25 110 3.5 3.0 3.2 6.0 158 chr3L 3128169 intergenic prominin-like - chr3L 3128248 intergenic not near genes chr3L 3128327 intergenic not near genes chr3L_25_3125001 chr3L_3125001 RAL-138 1110 chr3L 3259632 3259638 chr3L 3259740 3259742 4 107 4.5 0.5 2.5 1.1 110 chr3L 3259632 intron ckd + chr3L 3259687 intron ckd + chr3L 3259742 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-138 1111 chr3L 3281444 3281455 chr3L 3281965 3281976 Doc 4 521 5.0 7.5 6.2 0.6 532 chr3L 3281444 intron CG12017 + chr3L 3281710 intron CG12017 + chr3L 3281976 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-138 1112 chr3L 3281456 3281461 chr3L 3281940 3281978 Doc 4 497 4.0 4.0 4.0 0.8 522 chr3L 3281456 intron CG12017 + chr3L 3281717 intron CG12017 + chr3L 3281978 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-138 1113 chr3L 3315955 3315987 chr3L 3316081 3316113 5 126 3.0 2.5 2.8 1.3 158 chr3L 3315955 intergenic Drsl4 + chr3L 3316034 intergenic Drsl4 + chr3L 3316113 intergenic Drsl4 + chr3L_5_3315001 chr3L_3315001 RAL-138 1114 chr3L 3436264 3436272 chr3L 3436368 3436376 4 104 3.0 1.5 2.2 1.2 112 chr3L 3436264 intron eIF5B - chr3L 3436320 intron eIF5B - chr3L 3436376 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-138 1115 chr3L 3436277 3436300 chr3L 3436381 3436404 5 104 2.0 3.0 2.5 1.4 127 chr3L 3436277 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436404 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-138 1116 chr3L 3470131 3470157 chr3L 3470232 3470258 6 101 0.0 1.5 0.8 3.3 127 chr3L 3470131 intron CG14971 - chr3L 3470194 intron CG14971 - chr3L 3470258 intron CG14971 - chr3L_6_3470001 chr3L_3470001 RAL-138 1117 chr3L 3475085 3475099 chr3L 3475537 3475547 jockey 4 460 2.0 5.5 3.8 0.8 462 chr3L 3475085 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475547 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-138 1118 chr3L 3581643 3581673 chr3L 3581746 3581788 6 113 2.5 1.5 2.0 2.0 145 chr3L 3581643 intron Eip63E + chr3L 3581716 intron Eip63E + chr3L 3581788 intron Eip63E + chr3L_6_3580001 chr3L_3580001 RAL-138 1119 chr3L 3601276 3601317 chr3L 3606611 3606651 copia 5 5332 2.0 2.0 2.0 1.7 5375 chr3L 3601276 intron Eip63E + chr3L 3603964 intron Eip63E + chr3L 3606651 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-138 1120 chr3L 3619379 3619433 chr3L 3619498 3619552 9 116 3.5 4.5 4.0 1.8 173 chr3L 3619379 intergenic not near genes chr3L 3619466 intergenic not near genes chr3L 3619552 intergenic not near genes chr3L_9_3615001 chr3L_3615001 RAL-138 1121 chr3L 3627212 3627259 chr3L 3627342 3627389 12 130 4.0 2.0 3.0 3.0 177 chr3L 3627212 intron dar1 + chr3L 3627300 intron dar1 + chr3L 3627389 intron dar1 + chr3L_12_3625001 chr3L_3625001 RAL-138 1122 chr3L 3737911 3737959 chr3L 3738025 3738073 9 114 3.0 1.5 2.2 2.8 162 chr3L 3737911 intron CG32264 - chr3L 3737992 intron CG32264 - chr3L 3738073 intron CG32264 - chr3L_9_3735001 chr3L_3735001 RAL-138 1123 chr3L 3766712 3766738 chr3L 3766823 3766848 8 111 7.5 6.0 6.8 1.0 136 chr3L 3766712 intron CG32264 - chr3L 3766780 intron CG32264 - chr3L 3766848 intron CG32264 - chr3L_8_3765001 chr3L_3765001 RAL-138 1124 chr3L 3768953 3768974 chr3L 3769073 3769100 9 125 7.0 5.0 6.0 1.3 147 chr3L 3768953 intron CG32264 - chr3L 3769026 intron CG32264 - chr3L 3769100 exon CG32264 - chr3L_9_3765001 chr3L_3765001 RAL-138 1125 chr3L 3783253 3783289 chr3L 3783355 3783391 8 98 6.0 2.0 4.0 1.6 138 chr3L 3783253 intron CG32264 - chr3L 3783322 intron CG32264 - chr3L 3783391 intron CG32264 - chr3L_8_3780001 chr3L_3780001 RAL-138 1126 chr3L 3795571 3795625 chr3L 3795673 3795727 14 100 5.0 1.5 3.2 3.3 156 chr3L 3795571 intron CG32264 - chr3L 3795649 intron CG32264 - chr3L 3795727 intron CG32264 - chr3L_14_3795001 chr3L_3795001 RAL-138 1127 chr3L 3797220 3797265 chr3L 3797328 3797373 10 108 0.5 5.0 2.8 2.6 153 chr3L 3797220 intron CG32264 - chr3L 3797296 intron CG32264 - chr3L 3797373 intron CG32264 - chr3L_10_3795001 chr3L_3795001 RAL-138 1128 chr3L 3815026 3815073 chr3L 3815132 3815179 16 106 3.5 2.0 2.8 4.2 153 chr3L 3815026 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815102 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815179 intron,intron Scsalpha +,CR43932 - chr3L_16_3815001 chr3L_3815001 RAL-138 1129 chr3L 3833712 3833749 chr3L 3833978 3834015 pogo 12 266 6.5 1.5 4.0 2.4 303 chr3L 3833712 intron enc + chr3L 3833864 intron enc + chr3L 3834015 intron enc + chr3L_12_3830001 chr3L_3830001 RAL-138 1130 chr3L 3877440 3877466 chr3L 3877588 3877614 5 148 0.0 3.5 1.8 1.8 174 chr3L 3877440 intergenic not near genes chr3L 3877527 intergenic not near genes chr3L 3877614 intergenic not near genes chr3L_5_3875001 chr3L_3875001 RAL-138 1131 chr3L 3912771 3912808 chr3L 3912888 3912924 6 116 5.0 1.0 3.0 1.5 153 chr3L 3912771 intron Eip63F-1 - chr3L 3912848 intron Eip63F-1 - chr3L 3912924 intron Eip63F-1 - chr3L_6_3910001 chr3L_3910001 RAL-138 1132 chr3L 3921387 3921420 chr3L 3921676 3921709 6 285 0.5 6.0 3.2 1.4 322 chr3L 3921387 intron Eip63F-1 - chr3L 3921548 intron Eip63F-1 - chr3L 3921709 intron Eip63F-1 - chr3L_6_3920001 chr3L_3920001 RAL-138 1133 chr3L 3955824 3955876 chr3L 3955939 3955991 12 115 6.0 3.5 4.8 2.1 167 chr3L 3955824 3` UTR CG12605 - chr3L 3955908 3` UTR CG12605 - chr3L 3955991 3` UTR CG12605 - chr3L_12_3955001 chr3L_3955001 RAL-138 1134 chr3L 3968027 3968059 chr3L 3968130 3968163 9 103 1.0 0.0 0.5 6.0 136 chr3L 3968027 intergenic not near genes chr3L 3968095 intergenic not near genes chr3L 3968163 intergenic not near genes chr3L_9_3965001 chr3L_3965001 RAL-138 1135 chr3L 3977434 3977462 chr3L 3977534 3977567 8 104 1.0 9.0 5.0 1.3 133 chr3L 3977434 intergenic not near genes chr3L 3977500 intergenic not near genes chr3L 3977567 intergenic not near genes chr3L_8_3975001 chr3L_3975001 RAL-138 1136 chr3L 4048395 4048401 chr3L 4048512 4048518 4 117 14.5 5.0 9.8 0.4 123 chr3L 4048395 intron CG1136 + chr3L 4048456 intron CG1136 + chr3L 4048518 intron CG1136 + chr3L_4_4045001 chr3L_4045001 RAL-138 1137 chr3L 4048406 4048442 chr3L 4048511 4048559 13 116 3.5 4.5 4.0 2.6 153 chr3L 4048406 intron CG1136 + chr3L 4048482 intron CG1136 + chr3L 4048559 intron CG1136 + chr3L_13_4045001 chr3L_4045001 RAL-138 1138 chr3L 4146806 4146839 chr3L 4146913 4146946 7 107 0.0 6.0 3.0 1.8 140 chr3L 4146806 intergenic not near genes chr3L 4146876 intergenic not near genes chr3L 4146946 intergenic not near genes chr3L_7_4145001 chr3L_4145001 RAL-138 1139 chr3L 4229722 4229763 chr3L 4229825 4229882 15 107 7.0 6.0 6.5 2.0 160 chr3L 4229722 intron ImpL2 - chr3L 4229802 intron ImpL2 - chr3L 4229882 intron ImpL2 - chr3L_15_4225001 chr3L_4225001 RAL-138 1140 chr3L 4238715 4238747 chr3L 4238841 4238873 15 126 2.5 0.5 1.5 6.0 158 chr3L 4238715 intergenic not near genes chr3L 4238794 intergenic not near genes chr3L 4238873 intergenic not near genes chr3L_15_4235001 chr3L_4235001 RAL-138 1141 chr3L 4341330 4341335 chr3L 21448026 21448026 12 17106694 11.5 31.0 21.2 0.5 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_12_12890001 chr3L_12890001 RAL-138 1142 chr3L 4347820 4347831 chr3L 4347931 4347942 4 111 5.5 5.0 5.2 0.6 122 chr3L 4347820 intron Cip4 - chr3L 4347881 intron Cip4 - chr3L 4347942 intron Cip4 - chr3L_4_4345001 chr3L_4345001 RAL-138 1143 chr3L 4390008 4390032 chr3L 4390119 4390144 4 109 2.0 2.5 2.2 1.2 136 chr3L 4390008 intron slow + chr3L 4390076 intron slow + chr3L 4390144 intron slow + chr3L_4_4390001 chr3L_4390001 RAL-138 1144 chr3L 4438721 4438742 chr3L 4438825 4438847 5 104 4.0 7.0 5.5 0.8 126 chr3L 4438721 intergenic CG15021 + chr3L 4438784 intergenic CG15021 + chr3L 4438847 intergenic not near genes chr3L_5_4435001 chr3L_4435001 RAL-138 1145 chr3L 4440730 4440754 chr3L 4440833 4440860 5 104 3.0 0.0 1.5 2.0 130 chr3L 4440730 intergenic not near genes chr3L 4440795 intergenic not near genes chr3L 4440860 intergenic not near genes chr3L_5_4440001 chr3L_4440001 RAL-138 1146 chr3L 4480568 4480580 chr3L 4481012 4481012 4 441 14.5 219.0 116.8 0.0 444 chr3L 4480568 exon CG7465 + chr3L 4480790 exon CG7465 + chr3L 4481012 exon CG7465 + chr3L_4_4480001 chr3L_4480001 RAL-138 1147 chr3L 4481123 4481128 chr3L 4481362 4481364 4 242 166.5 32.0 99.2 0.0 241 chr3L 4481123 exon CG7465 + chr3L 4481244 exon CG7465 + chr3L 4481364 exon CG7465 + chr3L_4_4480001 chr3L_4480001 RAL-138 1148 chr3L 4491361 4491413 chr3L 4491479 4491527 12 118 6.5 0.0 3.2 2.9 166 chr3L 4491361 intergenic CG13722 - chr3L 4491444 intergenic CG13722 - chr3L 4491527 intergenic not near genes chr3L_12_4490001 chr3L_4490001 RAL-138 1149 chr3L 4519399 4519429 chr3L 4519501 4519531 9 102 2.0 2.5 2.2 2.8 132 chr3L 4519399 intron Tie - chr3L 4519465 intron Tie - chr3L 4519531 intron Tie - chr3L_9_4515001 chr3L_4515001 RAL-138 1150 chr3L 4576868 4576920 chr3L 4576983 4577035 9 115 0.5 2.5 1.5 3.6 167 chr3L 4576868 intron CG42540 + chr3L 4576952 intron CG42540 + chr3L 4577035 intron CG42540 + chr3L_9_4575001 chr3L_4575001 RAL-138 1151 chr3L 2056267 2056294 chr3L 4622212 4622221 4 2565932 9.5 26.0 17.8 0.2 2565954 chr3L 2056267 exon sls - chr3L 3339244 intron kst + chr3L 4622221 intron,exon Src64B -,CG32246 + chr3L_4_3335001 chr3L_3335001 RAL-138 1152 chr3L 4638075 4638099 chr3L 4638186 4638210 7 111 2.5 5.0 3.8 1.5 135 chr3L 4638075 intron axo - chr3L 4638142 intron axo - chr3L 4638210 intron axo - chr3L_7_4635001 chr3L_4635001 RAL-138 1153 chr3L 4676011 4676053 chr3L 4676117 4676159 9 106 6.5 6.5 6.5 1.2 148 chr3L 4676011 intron axo - chr3L 4676085 intron axo - chr3L 4676159 intron axo - chr3L_9_4675001 chr3L_4675001 RAL-138 1154 chr3L 4703777 4703822 chr3L 4703891 4703922 5 109 3.0 1.0 2.0 1.7 145 chr3L 4703777 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703850 intron,5` UTR RhoGEF64C +,CR43879 + chr3L 4703922 intron,5` UTR RhoGEF64C +,CR43879 + chr3L_5_4700001 chr3L_4700001 RAL-138 1155 chr3L 4824827 4824831 chr3L 4824939 4824944 4 113 9.5 0.0 4.8 0.7 117 chr3L 4824827 intron Dhc64C - chr3L 4824886 intron Dhc64C - chr3L 4824944 intron Dhc64C - chr3L_4_4820001 chr3L_4820001 RAL-138 1156 chr3L 4837869 4837920 chr3L 4837973 4838024 15 100 5.0 8.5 6.8 1.9 155 chr3L 4837869 3` UTR CG13707 - chr3L 4837946 3` UTR CG13707 - chr3L 4838024 3` UTR CG13707 - chr3L_15_4835001 chr3L_4835001 RAL-138 1157 chr3L 4840374 4840420 chr3L 4840508 4840554 6 134 2.0 5.0 3.5 1.3 180 chr3L 4840374 intergenic CG13707 - chr3L 4840464 intergenic CG13707 - chr3L 4840554 intergenic CG13707 - chr3L_6_4840001 chr3L_4840001 RAL-138 1158 chr3L 4856276 4856288 chr3L 4856401 4856414 6 126 7.5 3.5 5.5 0.9 138 chr3L 4856276 intergenic not near genes chr3L 4856345 intergenic not near genes chr3L 4856414 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-138 1159 chr3L 4856294 4856302 chr3L 4856400 4856416 4 118 6.0 3.5 4.8 0.7 122 chr3L 4856294 intergenic not near genes chr3L 4856355 intergenic not near genes chr3L 4856416 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-138 1160 chr3L 4858284 4858332 chr3L 4858397 4858447 28 111 7.0 10.0 8.5 2.9 163 chr3L 4858284 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858447 intergenic not near genes chr3L_28_4855001 chr3L_4855001 RAL-138 1161 chr3L 4901104 4901156 chr3L 4907319 4907371 diver 8 6215 4.0 5.0 4.5 1.5 6267 chr3L 4901104 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907371 intergenic not near genes chr3L_8_4900001 chr3L_4900001 RAL-138 1162 chr3L 5024754 5024787 chr3L 5024868 5024901 9 114 4.0 2.0 3.0 2.2 147 chr3L 5024754 intron Con - chr3L 5024828 intron Con - chr3L 5024901 intron Con - chr3L_9_5020001 chr3L_5020001 RAL-138 1163 chr3L 5045434 5045475 chr3L 5050240 5050281 Doc 8 4806 4.5 1.5 3.0 2.0 4847 chr3L 5045434 intron Con - chr3L 5047858 intron Con - chr3L 5050281 intron Con - chr3L_8_5045001 chr3L_5045001 RAL-138 1164 chr3L 5096160 5096164 chr3L 5096389 5096416 4 246 2.5 7.5 5.0 0.7 256 chr3L 5096160 intergenic not near genes chr3L 5096288 intergenic not near genes chr3L 5096416 intergenic not near genes chr3L_4_5095001 chr3L_5095001 RAL-138 1165 chr3L 5104458 5104511 chr3L 5124617 5124670 20 20159 2.5 1.5 2.0 6.7 20212 chr3L 5104458 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124670 intergenic not near genes chr3L_20_5110001 chr3L_5110001 RAL-138 1166 chr3L 5212213 5212269 chr3L 5212321 5212351 20 101 3.0 4.5 3.8 4.2 138 chr3L 5212213 intron shep - chr3L 5212282 intron shep - chr3L 5212351 intron shep - chr3L_20_5210001 chr3L_5210001 RAL-138 1167 chr3L 5251848 5251864 chr3L 5251952 5251968 6 104 3.5 5.5 4.5 1.1 120 chr3L 5251848 intron shep - chr3L 5251908 intron shep - chr3L 5251968 intron shep - chr3L_6_5250001 chr3L_5250001 RAL-138 1168 chr3L 5263617 5263667 chr3L 5263954 5264004 7 336 0.5 2.5 1.5 2.8 387 chr3L 5263617 intron shep - chr3L 5263810 intron shep - chr3L 5264004 intron shep - chr3L_7_5260001 chr3L_5260001 RAL-138 1169 chr3L 5271168 5271194 chr3L 5271271 5271294 11 102 0.0 0.0 0.0 11.0 126 chr3L 5271168 intron shep - chr3L 5271231 intron shep - chr3L 5271294 intron shep - chr3L_11_5270001 chr3L_5270001 RAL-138 1170 chr3L 5327440 5327477 chr3L 5327550 5327587 6 110 1.0 1.5 1.2 2.7 147 chr3L 5327440 intergenic not near genes chr3L 5327514 intergenic not near genes chr3L 5327587 intergenic not near genes chr3L_6_5325001 chr3L_5325001 RAL-138 1171 chr3L 5390957 5390988 chr3L 5391076 5391107 4 118 2.0 4.0 3.0 1.0 150 chr3L 5390957 intergenic not near genes chr3L 5391032 intergenic not near genes chr3L 5391107 intergenic not near genes chr3L_4_5390001 chr3L_5390001 RAL-138 1172 chr3L 5482938 5482951 chr3L 5483158 5483174 9 228 7.5 53.5 30.5 0.3 236 chr3L 5482938 exon CG4835 + chr3L 5483056 exon CG4835 + chr3L 5483174 exon CG4835 + chr3L_9_5480001 chr3L_5480001 RAL-138 1173 chr3L 5485024 5485066 chr3L 5485131 5485173 6 107 1.5 2.0 1.8 2.1 149 chr3L 5485024 intergenic not near genes chr3L 5485098 intergenic not near genes chr3L 5485173 intergenic not near genes chr3L_6_5485001 chr3L_5485001 RAL-138 1174 chr3L 5504546 5504566 chr3L 5504649 5504669 6 103 1.0 1.5 1.2 2.7 123 chr3L 5504546 intron CG34342 - chr3L 5504608 intron CG34342 - chr3L 5504669 intron CG34342 - chr3L_6_5500001 chr3L_5500001 RAL-138 1175 chr3L 5516384 5516439 chr3L 5516503 5516559 10 119 1.5 1.0 1.2 4.5 175 chr3L 5516384 intron Lkr - chr3L 5516472 intron Lkr - chr3L 5516559 intron Lkr - chr3L_10_5515001 chr3L_5515001 RAL-138 1176 chr3L 5597809 5597828 chr3L 5597914 5597933 5 105 0.5 0.0 0.2 4.2 124 chr3L 5597809 intergenic CG5150 + chr3L 5597871 intergenic CG5150 + chr3L 5597933 intergenic not near genes chr3L_5_5595001 chr3L_5595001 RAL-138 1177 chr3L 5841402 5841444 chr3L 5841489 5841547 28 96 7.0 7.5 7.2 3.4 145 chr3L 5841402 intron vn - chr3L 5841474 intron vn - chr3L 5841547 intron vn - chr3L_28_5840001 chr3L_5840001 RAL-138 1178 chr3L 5910012 5910046 chr3L 5910278 5910312 pogo 6 266 2.0 1.5 1.8 2.1 300 chr3L 5910012 intron CG13288 + chr3L 5910162 intron CG13288 + chr3L 5910312 intron CG13288 + chr3L_6_5910001 chr3L_5910001 RAL-138 1179 chr3L 5926297 5926336 chr3L 5926510 5926551 BS 14 214 5.5 10.5 8.0 1.6 254 chr3L 5926297 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926551 intron Vap-33B + chr3L_14_5925001 chr3L_5925001 RAL-138 1180 chr3L 5983854 5983861 chr3L 5983958 5984007 4 136 2.0 0.0 1.0 2.0 153 chr3L 5983854 3` UTR CR45439 - chr3L 5983930 intergenic CR45439 -,CR45440 - chr3L 5984007 intergenic CR45440 -,CR45439 - chr3L_4_5980001 chr3L_5980001 RAL-138 1181 chr3L 6001663 6001702 chr3L 6004388 6004427 jockey 6 2725 5.5 1.0 3.2 1.4 2764 chr3L 6001663 intron PVRAP + chr3L 6003045 intron PVRAP + chr3L 6004427 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-138 1182 chr3L 6028367 6028388 chr3L 6028486 6028511 4 122 6.5 2.0 4.2 0.8 144 chr3L 6028367 intergenic not near genes chr3L 6028439 intergenic not near genes chr3L 6028511 intergenic not near genes chr3L_4_6025001 chr3L_6025001 RAL-138 1183 chr3L 6028399 6028406 chr3L 6028476 6028513 7 102 5.0 2.0 3.5 1.6 114 chr3L 6028399 intergenic not near genes chr3L 6028456 intergenic not near genes chr3L 6028513 intergenic not near genes chr3L_7_6025001 chr3L_6025001 RAL-138 1184 chr3L 6040340 6040393 chr3L 6042721 6042774 Doc 12 2380 7.0 6.5 6.8 1.5 2434 chr3L 6040340 intergenic Jon65Aiv + chr3L 6041557 intergenic not near genes chr3L 6042774 intergenic not near genes chr3L_12_6040001 chr3L_6040001 RAL-138 1185 chr3L 6052125 6052152 chr3L 6052235 6052263 15 111 0.0 12.0 6.0 2.1 138 chr3L 6052125 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052194 intergenic Jon65Aii + chr3L 6052263 intergenic Jon65Aii + chr3L_15_6050001 chr3L_6050001 RAL-138 1186 chr3L 6052644 6052651 chr3L 6052742 6052757 8 104 28.5 19.5 24.0 0.3 113 chr3L 6052644 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052757 exon Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-138 1187 chr3L 6052652 6052664 chr3L 6052741 6052750 9 100 23.5 19.5 21.5 0.4 98 chr3L 6052652 exon Jon65Aii + chr3L 6052701 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_9_6050001 chr3L_6050001 RAL-138 1188 chr3L 6102927 6102964 chr3L 6103035 6103072 17 108 13.0 0.0 6.5 2.3 145 chr3L 6102927 intron Ets65A + chr3L 6103000 intron Ets65A + chr3L 6103072 intron Ets65A + chr3L_17_6100001 chr3L_6100001 RAL-138 1189 chr3L 6116685 6116721 chr3L 6116794 6116830 10 109 2.5 2.5 2.5 2.9 145 chr3L 6116685 intron Ets65A + chr3L 6116758 intron Ets65A + chr3L 6116830 intron Ets65A + chr3L_10_6115001 chr3L_6115001 RAL-138 1190 chr3L 6143954 6143986 chr3L 6144119 6144151 8 165 4.0 0.5 2.2 2.5 197 chr3L 6143954 3` UTR Lcp65Ad + chr3L 6144052 3` UTR Lcp65Ad + chr3L 6144151 intergenic Lcp65Ad + chr3L_8_6140001 chr3L_6140001 RAL-138 1191 chr3L 6155674 6155712 chr3L 6155785 6155823 4 111 1.5 2.5 2.0 1.3 149 chr3L 6155674 intergenic CR45421 - chr3L 6155748 intergenic not near genes chr3L 6155823 intergenic not near genes chr3L_4_6155001 chr3L_6155001 RAL-138 1192 chr3L 6181030 6181077 chr3L 6181141 6181194 39 110 13.0 21.0 17.0 2.2 164 chr3L 6181030 exon CG10274 - chr3L 6181112 exon CG10274 - chr3L 6181194 exon CG10274 - chr3L_39_6180001 chr3L_6180001 RAL-138 1193 chr3L 6220909 6220948 chr3L 6230086 6230088 roo 9 9172 3.0 9.5 6.2 1.2 9179 chr3L 6220909 5` UTR pncr008:3L + chr3L 6225498 intergenic not near genes chr3L 6230088 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-138 1194 chr3L 6233859 6233905 chr3L 6234124 6234131 7 259 5.5 2.0 3.8 1.5 272 chr3L 6233859 exon CG42714 - chr3L 6233995 intron CG42714 - chr3L 6234131 intergenic CG42714 -,CG10226 - chr3L_7_6230001 chr3L_6230001 RAL-138 1195 chr3L 6259365 6259400 chr3L 6261195 6261230 19 1830 41.5 49.5 45.5 0.4 1865 chr3L 6259365 3` UTR ImpL3 - chr3L 6260298 exon ImpL3 - chr3L 6261230 intron ImpL3 - chr3L_19_6260001 chr3L_6260001 RAL-138 1196 chr3L 6259253 6259270 chr3L 6261273 6261290 11 2021 45.5 54.5 50.0 0.2 2037 chr3L 6259253 3` UTR ImpL3 - chr3L 6260272 exon ImpL3 - chr3L 6261290 intron ImpL3 - chr3L_11_6260001 chr3L_6260001 RAL-138 1197 chr3L 6259269 6259292 chr3L 6261293 6261313 13 2022 49.5 57.5 53.5 0.2 2044 chr3L 6259269 3` UTR ImpL3 - chr3L 6260291 exon ImpL3 - chr3L 6261313 intron ImpL3 - chr3L_13_6260001 chr3L_6260001 RAL-138 1198 chr3L 6332232 6332275 chr3L 6332343 6332387 13 112 1.0 0.0 0.5 8.7 155 chr3L 6332232 intron CG13300 - chr3L 6332310 intron CG13300 - chr3L 6332387 intron CG13300 - chr3L_13_6330001 chr3L_6330001 RAL-138 1199 chr3L 6334987 6335041 chr3L 6335481 6335537 297 20 493 6.0 7.5 6.8 2.6 550 chr3L 6334987 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335537 intron CG13300 - chr3L_20_6335001 chr3L_6335001 RAL-138 1200 chr3L 6353366 6353379 chr3L 6353462 6353462 4 96 9.0 6.0 7.5 0.5 96 chr3L 6353366 intergenic not near genes chr3L 6353414 intergenic not near genes chr3L 6353462 intergenic not near genes chr3L_4_6350001 chr3L_6350001 RAL-138 1201 chr3L 6353383 6353408 chr3L 6353456 6353488 11 86 3.5 5.5 4.5 2.0 105 chr3L 6353383 intergenic not near genes chr3L 6353436 intergenic not near genes chr3L 6353488 intergenic not near genes chr3L_11_6350001 chr3L_6350001 RAL-138 1202 chr3L 6405644 6405682 chr3L 6432133 6432171 roo 10 26489 1.0 3.5 2.2 3.1 26527 chr3L 6405644 intron CG42747 + chr3L 6418908 intron CG42747 + chr3L 6432171 intron CG42747 + chr3L_10_6415001 chr3L_6415001 RAL-138 1203 chr3L 6525820 6525855 chr3L 6526262 6526304 7 442 3.0 3.5 3.2 1.7 484 chr3L 6525820 intron sfl + chr3L 6526062 intron sfl + chr3L 6526304 intron sfl + chr3L_7_6525001 chr3L_6525001 RAL-138 1204 chr3L 6646585 6646641 chr3L 6646704 6646764 14 119 8.5 0.5 4.5 2.5 179 chr3L 6646585 intergenic not near genes chr3L 6646674 intergenic not near genes chr3L 6646764 intergenic not near genes chr3L_14_6645001 chr3L_6645001 RAL-138 1205 chr3L 6657425 6657443 chr3L 6657602 6657609 6 174 5.0 2.0 3.5 1.3 184 chr3L 6657425 intergenic not near genes chr3L 6657517 intergenic not near genes chr3L 6657609 intergenic not near genes chr3L_6_6655001 chr3L_6655001 RAL-138 1206 chr3L 6657469 6657474 chr3L 6657620 6657627 4 158 1.0 4.0 2.5 1.1 158 chr3L 6657469 intergenic not near genes chr3L 6657548 intergenic not near genes chr3L 6657627 intergenic not near genes chr3L_4_6655001 chr3L_6655001 RAL-138 1207 chr3L 6855909 6855919 chr3L 6860716 6860725 Doc 4 4807 4.0 3.0 3.5 0.9 4816 chr3L 6855909 intergenic not near genes chr3L 6858317 intergenic not near genes chr3L 6860725 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-138 1208 chr3L 6855928 6855948 chr3L 6860737 6860743 Doc 8 4806 2.5 9.0 5.8 1.2 4815 chr3L 6855928 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860743 intergenic not near genes chr3L_8_6855001 chr3L_6855001 RAL-138 1209 chr3L 6887495 6887530 chr3L 6895012 6895047 roo 7 7517 11.0 3.5 7.2 0.9 7552 chr3L 6887495 intergenic not near genes chr3L 6891271 intergenic not near genes chr3L 6895047 intergenic not near genes chr3L_7_6890001 chr3L_6890001 RAL-138 1210 chr3L 6934322 6934359 chr3L 6934458 6934495 4 136 1.5 0.5 1.0 2.0 173 chr3L 6934322 exon CG14820 + chr3L 6934408 intron CG14820 + chr3L 6934495 exon CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-138 1211 chr3L 6958974 6958981 chr3L 6963530 6963541 5 4558 74.5 74.5 74.5 0.1 4567 chr3L 6958974 exon Surf1 + chr3L 6961258 exon sgl - chr3L 6963541 intron sgl - chr3L_5_6960001 chr3L_6960001 RAL-138 1212 chr3L 6958973 6959016 chr3L 6963567 6963571 8 4573 100.0 61.5 80.8 0.1 4598 chr3L 6958973 exon Surf1 + chr3L 6961272 exon sgl - chr3L 6963571 intron sgl - chr3L_8_6960001 chr3L_6960001 RAL-138 1213 chr3L 6959009 6959023 chr3L 6963582 6963584 4 4565 104.5 46.5 75.5 0.1 4575 chr3L 6959009 exon Surf1 + chr3L 6961296 exon sgl - chr3L 6963584 intron sgl - chr3L_4_6960001 chr3L_6960001 RAL-138 1214 chr3L 6994871 6994910 chr3L 6995507 6995546 BS 11 636 0.0 9.0 4.5 2.0 675 chr3L 6994871 intergenic bin + chr3L 6995208 intergenic not near genes chr3L 6995546 intergenic not near genes chr3L_11_6995001 chr3L_6995001 RAL-138 1215 chr3L 7033157 7033166 chr3L 7033261 7033270 5 103 10.5 6.5 8.5 0.5 113 chr3L 7033157 intron Mp + chr3L 7033214 intron Mp + chr3L 7033270 intron Mp + chr3L_5_7030001 chr3L_7030001 RAL-138 1216 chr3L 7033168 7033204 chr3L 7033253 7033310 17 99 5.0 6.5 5.8 2.5 142 chr3L 7033168 intron Mp + chr3L 7033239 intron Mp + chr3L 7033310 intron Mp + chr3L_17_7030001 chr3L_7030001 RAL-138 1217 chr3L 7041900 7041923 chr3L 7042002 7042025 18 102 6.0 5.0 5.5 2.8 125 chr3L 7041900 intron Mp + chr3L 7041962 intron Mp + chr3L 7042025 intron Mp + chr3L_18_7040001 chr3L_7040001 RAL-138 1218 chr3L 7090010 7090053 chr3L 7090116 7090159 9 103 4.5 4.0 4.2 1.7 149 chr3L 7090010 intergenic not near genes chr3L 7090084 intergenic not near genes chr3L 7090159 intergenic not near genes chr3L_9_7090001 chr3L_7090001 RAL-138 1219 chr3L 7100419 7100448 chr3L 7100530 7100560 6 112 3.0 4.0 3.5 1.3 141 chr3L 7100419 intron form3 + chr3L 7100490 intron form3 + chr3L 7100560 intron form3 + chr3L_6_7100001 chr3L_7100001 RAL-138 1220 chr3L 7132629 7132679 chr3L 7132747 7132797 10 118 4.5 3.5 4.0 2.0 168 chr3L 7132629 intron Dbi + chr3L 7132713 intron Dbi + chr3L 7132797 intron Dbi + chr3L_10_7130001 chr3L_7130001 RAL-138 1221 chr3L 7201270 7201271 chr3L 21448025 21448026 7 14246756 23.0 31.5 27.2 0.2 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_7_14320001 chr3L_14320001 RAL-138 1222 chr3L 7306724 7306772 chr3L 7307528 7307576 6 801 3.5 3.0 3.2 1.4 852 chr3L 7306724 intron unc-13-4A - chr3L 7307150 intron unc-13-4A - chr3L 7307576 intron unc-13-4A - chr3L_6_7305001 chr3L_7305001 RAL-138 1223 chr3L 7375906 7375910 chr3L 7376007 7376010 4 100 12.5 4.5 8.5 0.4 104 chr3L 7375906 exon SMSr - chr3L 7375958 intron SMSr - chr3L 7376010 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-138 1224 chr3L 7375931 7375954 chr3L 7376013 7376055 7 98 4.5 5.0 4.8 1.2 124 chr3L 7375931 intron SMSr - chr3L 7375993 intron SMSr - chr3L 7376055 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-138 1225 chr3L 7377297 7377340 chr3L 7380427 7380470 297 12 3127 6.0 2.5 4.2 2.3 3173 chr3L 7377297 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380470 intron SMSr - chr3L_12_7375001 chr3L_7375001 RAL-138 1226 chr3L 7498744 7498782 chr3L 7503546 7503584 F-element 4 4802 4.5 3.0 3.8 0.8 4840 chr3L 7498744 5` UTR CG8539 - chr3L 7501164 intergenic not near genes chr3L 7503584 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-138 1227 chr3L 7572264 7572308 chr3L 7572376 7572390 10 105 4.5 5.0 4.8 1.7 126 chr3L 7572264 intergenic not near genes chr3L 7572327 intergenic not near genes chr3L 7572390 intergenic not near genes chr3L_10_7570001 chr3L_7570001 RAL-138 1228 chr3L 7591121 7591179 chr3L 7591237 7591267 14 96 3.0 3.0 3.0 3.5 146 chr3L 7591121 intergenic CG7716 - chr3L 7591194 intergenic CG7716 - chr3L 7591267 intergenic CG7716 - chr3L_14_7590001 chr3L_7590001 RAL-138 1229 chr3L 7710943 7710974 chr3L 7711140 7711153 7 194 2.5 3.5 3.0 1.8 210 chr3L 7710943 intron,exon CG32373 +,Ank2 - chr3L 7711048 intron,intron CG32373 +,Ank2 - chr3L 7711153 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-138 1230 chr3L 7769278 7769319 chr3L 7769397 7769438 4 116 1.0 2.0 1.5 1.6 160 chr3L 7769278 intron Clk - chr3L 7769358 intron Clk - chr3L 7769438 intron Clk - chr3L_4_7765001 chr3L_7765001 RAL-138 1231 chr3L 7793699 7793726 chr3L 7800776 7800803 297 6 7077 9.5 2.5 6.0 0.9 7104 chr3L 7793699 intron CG32369 - chr3L 7797251 intron CG32369 - chr3L 7800803 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-138 1232 chr3L 7793731 7793736 chr3L 7800808 7800813 297 4 7077 8.0 4.5 6.2 0.6 7082 chr3L 7793731 intron CG32369 - chr3L 7797272 intron CG32369 - chr3L 7800813 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-138 1233 chr3L 7817045 7817079 chr3L 7817203 7817236 11 158 4.5 1.0 2.8 2.9 191 chr3L 7817045 intron Pdp1 - chr3L 7817140 intron Pdp1 - chr3L 7817236 intron Pdp1 - chr3L_11_7815001 chr3L_7815001 RAL-138 1234 chr3L 7856399 7856409 chr3L 7856507 7856516 4 108 13.0 4.0 8.5 0.4 117 chr3L 7856399 intron Pdp1 - chr3L 7856458 intron Pdp1 - chr3L 7856516 intron Pdp1 - chr3L_4_7855001 chr3L_7855001 RAL-138 1235 chr3L 7856410 7856426 chr3L 7856505 7856534 9 106 11.0 3.5 7.2 1.1 124 chr3L 7856410 intron Pdp1 - chr3L 7856472 intron Pdp1 - chr3L 7856534 intron Pdp1 - chr3L_9_7855001 chr3L_7855001 RAL-138 1236 chr3L 7876084 7876106 chr3L 7876187 7876210 4 104 0.0 0.0 0.0 4.0 126 chr3L 7876084 intron CG32365 + chr3L 7876147 intron CG32365 + chr3L 7876210 intron CG32365 + chr3L_4_7875001 chr3L_7875001 RAL-138 1237 chr3L 7886496 7886503 chr3L 7889037 7889046 Stalker4 4 2542 2.0 6.5 4.2 0.8 2550 chr3L 7886496 intron CG32365 + chr3L 7887771 intron CG32365 + chr3L 7889046 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-138 1238 chr3L 7886508 7886546 chr3L 7889029 7889088 Stalker4 9 2540 0.5 4.5 2.5 2.6 2580 chr3L 7886508 intron CG32365 + chr3L 7887798 intron CG32365 + chr3L 7889088 intron CG32365 + chr3L_9_7885001 chr3L_7885001 RAL-138 1239 chr3L 7916809 7916844 chr3L 7926005 7926040 roo 8 9196 3.0 3.0 3.0 2.0 9231 chr3L 7916809 3` UTR syd - chr3L 7921424 intron syd - chr3L 7926040 3` UTR syd - chr3L_8_7920001 chr3L_7920001 RAL-138 1240 chr3L 7949240 7949277 chr3L 7949341 7949378 29 99 16.0 4.5 10.2 2.6 138 chr3L 7949240 exon exex + chr3L 7949309 intron exex + chr3L 7949378 intron exex + chr3L_29_7945001 chr3L_7945001 RAL-138 1241 chr3L 7949278 7949288 chr3L 7949339 7949389 4 91 9.5 4.5 7.0 0.5 111 chr3L 7949278 exon exex + chr3L 7949334 intron exex + chr3L 7949389 intron exex + chr3L_4_7945001 chr3L_7945001 RAL-138 1242 chr3L 7956465 7956476 chr3L 7956568 7956579 5 103 2.0 4.0 3.0 1.2 114 chr3L 7956465 intergenic not near genes chr3L 7956522 intergenic not near genes chr3L 7956579 intergenic not near genes chr3L_5_7955001 chr3L_7955001 RAL-138 1243 chr3L 7985352 7985390 chr3L 7987705 7987743 NOF 9 2353 3.0 3.5 3.2 2.1 2391 chr3L 7985352 intron nmo + chr3L 7986548 intron nmo + chr3L 7987743 intron nmo + chr3L_9_7985001 chr3L_7985001 RAL-138 1244 chr3L 7997580 7997621 chr3L 7997685 7997726 10 105 8.0 2.0 5.0 1.7 146 chr3L 7997580 intron nmo + chr3L 7997653 intron nmo + chr3L 7997726 intron nmo + chr3L_10_7995001 chr3L_7995001 RAL-138 1245 chr3L 8062826 8062955 chr3L 8062930 8063116 7 127 1.0 1.0 1.0 3.5 290 chr3L 8062826 intergenic not near genes chr3L 8062971 intergenic not near genes chr3L 8063116 intergenic not near genes chr3L_7_8060001 chr3L_8060001 RAL-138 1246 chr3L 8148044 8148050 chr3L 8148277 8148282 4 232 7.0 2.0 4.5 0.7 238 chr3L 8148044 intron CG13676 - chr3L 8148163 intron CG13676 - chr3L 8148282 intron CG13676 - chr3L_4_8145001 chr3L_8145001 RAL-138 1247 chr3L 8149745 8149770 chr3L 8149876 8149901 5 131 3.0 2.0 2.5 1.4 156 chr3L 8149745 intron CG13676 - chr3L 8149823 intron CG13676 - chr3L 8149901 intron CG13676 - chr3L_5_8145001 chr3L_8145001 RAL-138 1248 chr3L 8210780 8210807 chr3L 8210920 8210947 7 139 6.0 2.0 4.0 1.4 167 chr3L 8210780 intergenic CG32364 - chr3L 8210864 intergenic CG32364 - chr3L 8210947 intergenic CG32364 - chr3L_7_8210001 chr3L_8210001 RAL-138 1249 chr3L 8233572 8233586 chr3L 8238859 8238870 Rt1a 5 5286 5.5 15.0 10.2 0.4 5298 chr3L 8233572 intron CG7213 - chr3L 8236221 intron CG7213 - chr3L 8238870 intron,intron CG7213 -,Dscam4 + chr3L_5_8235001 chr3L_8235001 RAL-138 1250 chr3L 8274816 8274819 chr3L 8274955 8274958 4 139 9.5 0.0 4.8 0.7 142 chr3L 8274816 intron Dscam4 + chr3L 8274887 intron Dscam4 + chr3L 8274958 intron Dscam4 + chr3L_4_8270001 chr3L_8270001 RAL-138 1251 chr3L 8314756 8314769 chr3L 8314872 8314887 5 118 0.5 18.5 9.5 0.5 131 chr3L 8314756 intron CG7185 - chr3L 8314822 intron CG7185 - chr3L 8314887 intron CG7185 - chr3L_5_8310001 chr3L_8310001 RAL-138 1252 chr3L 8317888 8317898 chr3L 8318022 8318027 6 131 11.0 3.0 7.0 0.8 139 chr3L 8317888 intergenic not near genes chr3L 8317958 intergenic not near genes chr3L 8318027 intergenic not near genes chr3L_6_8315001 chr3L_8315001 RAL-138 1253 chr3L 8456459 8456488 chr3L 8456570 8456597 8 112 5.5 9.5 7.5 0.9 138 chr3L 8456459 intron Gug + chr3L 8456528 intron Gug + chr3L 8456597 intron Gug + chr3L_8_8455001 chr3L_8455001 RAL-138 1254 chr3L 8481758 8481803 chr3L 8490929 8490976 roo 10 9156 7.0 7.5 7.2 1.2 9218 chr3L 8481758 intron CG43163 - chr3L 8486367 intron CG43163 - chr3L 8490976 intron CG43163 - chr3L_10_8485001 chr3L_8485001 RAL-138 1255 chr3L 8498284 8498308 chr3L 8505776 8505800 blood 5 7492 4.5 6.5 5.5 0.8 7516 chr3L 8498284 intron CG43163 - chr3L 8502042 intron CG43163 - chr3L 8505800 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-138 1256 chr3L 8580808 8580855 chr3L 8580919 8580965 13 109 2.5 5.5 4.0 2.6 157 chr3L 8580808 intron CG43078 + chr3L 8580886 intron CG43078 + chr3L 8580965 intron CG43078 + chr3L_13_8580001 chr3L_8580001 RAL-138 1257 chr3L 8643549 8643596 chr3L 8643650 8643697 23 100 10.5 7.5 9.0 2.3 148 chr3L 8643549 3` UTR Cpr66D + chr3L 8643623 intergenic Cpr66D + chr3L 8643697 intergenic Cpr66D + chr3L_23_8640001 chr3L_8640001 RAL-138 1258 chr3L 8690002 8690048 chr3L 8690108 8690154 19 102 4.5 5.5 5.0 3.2 152 chr3L 8690002 intergenic not near genes chr3L 8690078 intergenic not near genes chr3L 8690154 intergenic not near genes chr3L_19_8690001 chr3L_8690001 RAL-138 1259 chr3L 8697266 8697288 chr3L 8697371 8697393 10 105 6.0 4.5 5.2 1.6 127 chr3L 8697266 intergenic not near genes chr3L 8697330 intergenic not near genes chr3L 8697393 intergenic not near genes chr3L_10_8695001 chr3L_8695001 RAL-138 1260 chr3L 8700958 8701011 chr3L 8701066 8701117 43 100 6.5 10.5 8.5 4.5 159 chr3L 8700958 intergenic not near genes chr3L 8701038 intergenic not near genes chr3L 8701117 intergenic not near genes chr3L_43_8700001 chr3L_8700001 RAL-138 1261 chr3L 8718700 8718751 chr3L 8718801 8718852 6 101 3.0 0.0 1.5 2.4 152 chr3L 8718700 intergenic SrpRbeta - chr3L 8718776 intergenic SrpRbeta - chr3L 8718852 intergenic SrpRbeta - chr3L_6_8715001 chr3L_8715001 RAL-138 1262 chr3L 8784836 8784858 chr3L 8784944 8784966 7 108 4.5 3.5 4.0 1.4 130 chr3L 8784836 intron Fhos + chr3L 8784901 intron Fhos + chr3L 8784966 intron Fhos + chr3L_7_8780001 chr3L_8780001 RAL-138 1263 chr3L 8791252 8791292 chr3L 8796697 8796736 I-element 9 5445 7.0 7.5 7.2 1.1 5484 chr3L 8791252 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796736 intron Fhos + chr3L_9_8790001 chr3L_8790001 RAL-138 1264 chr3L 8814782 8814829 chr3L 8814922 8814969 11 130 4.0 6.5 5.2 1.8 187 chr3L 8814782 intergenic not near genes chr3L 8814876 intergenic not near genes chr3L 8814969 intergenic not near genes chr3L_11_8810001 chr3L_8810001 RAL-138 1265 chr3L 8846184 8846200 chr3L 8846290 8846306 6 106 2.0 1.0 1.5 2.4 122 chr3L 8846184 intron dally + chr3L 8846245 intron dally + chr3L 8846306 intron dally + chr3L_6_8845001 chr3L_8845001 RAL-138 1266 chr3L 8849193 8849244 chr3L 8849298 8849354 7 105 2.0 2.0 2.0 2.3 161 chr3L 8849193 intron dally + chr3L 8849274 intron dally + chr3L 8849354 intron dally + chr3L_7_8845001 chr3L_8845001 RAL-138 1267 chr3L 8878419 8878460 chr3L 8878618 8878659 6 199 3.5 4.5 4.0 1.2 240 chr3L 8878419 intron dally + chr3L 8878539 intron dally + chr3L 8878659 intron dally + chr3L_6_8875001 chr3L_8875001 RAL-138 1268 chr3L 8881422 8881475 chr3L 8881528 8881564 22 93 10.0 2.5 6.2 3.1 142 chr3L 8881422 intron dally + chr3L 8881493 intron dally + chr3L 8881564 intron dally + chr3L_22_8880001 chr3L_8880001 RAL-138 1269 chr3L 8884397 8884417 chr3L 8884609 8884641 8 220 7.5 1.5 4.5 1.5 244 chr3L 8884397 intron dally + chr3L 8884519 intron dally + chr3L 8884641 intron dally + chr3L_8_8880001 chr3L_8880001 RAL-138 1270 chr3L 8959376 8959384 chr3L 8959561 8959570 8 186 8.0 1.0 4.5 1.5 194 chr3L 8959376 intron CG13313 + chr3L 8959473 intron CG13313 + chr3L 8959570 intron CG13313 + chr3L_8_8955001 chr3L_8955001 RAL-138 1271 chr3L 9011105 9011141 chr3L 9011216 9011253 4 111 1.5 1.5 1.5 1.6 148 chr3L 9011105 intergenic not near genes chr3L 9011179 intergenic not near genes chr3L 9011253 intergenic not near genes chr3L_4_9010001 chr3L_9010001 RAL-138 1272 chr3L 9030429 9030444 chr3L 9030533 9030548 6 102 3.0 1.5 2.2 1.9 119 chr3L 9030429 intergenic not near genes chr3L 9030488 intergenic not near genes chr3L 9030548 intergenic not near genes chr3L_6_9030001 chr3L_9030001 RAL-138 1273 chr3L 9061116 9061163 chr3L 9061249 9061296 8 127 0.0 4.0 2.0 2.7 180 chr3L 9061116 intron Argk - chr3L 9061206 intron Argk - chr3L 9061296 intron Argk - chr3L_8_9060001 chr3L_9060001 RAL-138 1274 chr3L 9076902 9076953 chr3L 9084487 9084512 412 7 7580 2.0 3.5 2.8 1.8 7610 chr3L 9076902 exon Tequila + chr3L 9080707 intron Tequila + chr3L 9084512 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-138 1275 chr3L 9118334 9118339 chr3L 9118432 9118444 4 102 14.0 8.0 11.0 0.3 110 chr3L 9118334 intron bol - chr3L 9118389 intron bol - chr3L 9118444 intron bol - chr3L_4_9115001 chr3L_9115001 RAL-138 1276 chr3L 9125771 9125791 chr3L 9125873 9125893 10 101 9.0 6.5 7.8 1.1 122 chr3L 9125771 intron bol - chr3L 9125832 intron bol - chr3L 9125893 intron bol - chr3L_10_9125001 chr3L_9125001 RAL-138 1277 chr3L 9130534 9130581 chr3L 9134320 9134367 412 23 3783 7.5 7.5 7.5 2.7 3833 chr3L 9130534 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134367 intergenic Dhpr + chr3L_23_9130001 chr3L_9130001 RAL-138 1278 chr3L 9164677 9164704 chr3L 9166169 9166196 hobo 10 1492 6.0 0.0 3.0 2.5 1519 chr3L 9164677 intron Rdl - chr3L 9165436 intron Rdl - chr3L 9166196 intron Rdl - chr3L_10_9165001 chr3L_9165001 RAL-138 1279 chr3L 9270594 9270649 chr3L 9278374 9278395 roo 19 7772 9.0 7.0 8.0 2.1 7801 chr3L 9270594 intron GluRIB + chr3L 9274494 intron GluRIB + chr3L 9278395 exon GluRIB + chr3L_19_9270001 chr3L_9270001 RAL-138 1280 chr3L 9307796 9307796 chr3L 22908066 22908067 22 13600270 12.0 23.0 17.5 1.2 13600271 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_22_16105001 chr3L_16105001 RAL-138 1281 chr3L 9428659 9428713 chr3L 9428762 9428816 13 104 6.0 6.0 6.0 1.9 157 chr3L 9428659 3` UTR Shc + chr3L 9428738 intergenic RpS17 -,Shc + chr3L 9428816 3` UTR RpS17 - chr3L_13_9425001 chr3L_9425001 RAL-138 1282 chr3L 9443491 9443537 chr3L 9445306 9445353 S-element 21 1814 5.0 9.5 7.2 2.6 1862 chr3L 9443491 intron CG33926 + chr3L 9444422 intron CG33926 + chr3L 9445353 intron CG33926 + chr3L_21_9440001 chr3L_9440001 RAL-138 1283 chr3L 9501688 9501727 chr3L 9502198 9502238 roo 4 511 1.5 2.0 1.8 1.4 550 chr3L 9501688 intron path - chr3L 9501963 intron path - chr3L 9502238 intron path - chr3L_4_9500001 chr3L_9500001 RAL-138 1284 chr3L 9519277 9519296 chr3L 9519380 9519399 4 103 2.5 5.5 4.0 0.8 122 chr3L 9519277 intron CG33700 - chr3L 9519338 intron CG33700 - chr3L 9519399 intron CG33700 - chr3L_4_9515001 chr3L_9515001 RAL-138 1285 chr3L 9575909 9575947 chr3L 9580984 9581000 jockey 13 5088 3.0 2.5 2.8 3.4 5091 chr3L 9575909 intron CG42673 + chr3L 9578454 intron CG42673 + chr3L 9581000 intron CG42673 + chr3L_13_9575001 chr3L_9575001 RAL-138 1286 chr3L 9637827 9637886 chr3L 9637934 9637992 44 106 8.0 5.5 6.8 5.6 165 chr3L 9637827 exon fry - chr3L 9637910 intron fry - chr3L 9637992 intron fry - chr3L_44_9635001 chr3L_9635001 RAL-138 1287 chr3L 9639003 9639057 chr3L 9639113 9639167 20 110 0.0 8.5 4.2 3.8 164 chr3L 9639003 intron,3` UTR fry -,CG8329 + chr3L 9639085 intron fry - chr3L 9639167 intron fry - chr3L_20_9635001 chr3L_9635001 RAL-138 1288 chr3L 9657194 9657227 chr3L 9657301 9657334 4 102 1.0 5.0 3.0 1.0 140 chr3L 9657194 intron,intron fry -,CG33696 + chr3L 9657264 intron,intron fry -,CG33696 + chr3L 9657334 intron,intron fry -,CG33696 + chr3L_4_9655001 chr3L_9655001 RAL-138 1289 chr3L 9675109 9675162 chr3L 9675220 9675274 11 112 3.0 2.5 2.8 2.9 165 chr3L 9675109 intron fry - chr3L 9675192 intron fry - chr3L 9675274 intron fry - chr3L_11_9675001 chr3L_9675001 RAL-138 1290 chr3L 9775342 9775398 chr3L 9775726 9775783 27 384 0.0 12.5 6.2 3.8 441 chr3L 9775342 intron CG8177 + chr3L 9775562 intron CG8177 + chr3L 9775783 intron CG8177 + chr3L_27_9775001 chr3L_9775001 RAL-138 1291 chr3L 9824127 9824161 chr3L 9824231 9824265 5 104 2.5 0.0 1.2 2.3 138 chr3L 9824127 intron CG43897 + chr3L 9824196 intron CG43897 + chr3L 9824265 intron CG43897 + chr3L_5_9820001 chr3L_9820001 RAL-138 1292 chr3L 9831682 9831737 chr3L 9831788 9831843 10 106 2.0 7.0 4.5 1.8 161 chr3L 9831682 intron CG43897 + chr3L 9831762 intron CG43897 + chr3L 9831843 intron CG43897 + chr3L_10_9830001 chr3L_9830001 RAL-138 1293 chr3L 9918860 9918901 chr3L 9918980 9919021 8 119 6.0 0.5 3.2 1.9 161 chr3L 9918860 intron CG34356 + chr3L 9918940 intron CG34356 + chr3L 9919021 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-138 1294 chr3L 9929645 9929654 chr3L 9938450 9938459 roo 5 8805 7.0 3.5 5.2 0.8 8814 chr3L 9929645 intron CG34356 + chr3L 9934052 intron CG34356 + chr3L 9938459 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-138 1295 chr3L 9929658 9929699 chr3L 9938461 9938504 roo 7 8804 2.0 4.0 3.0 1.8 8846 chr3L 9929658 intron CG34356 + chr3L 9934081 intron CG34356 + chr3L 9938504 intron CG34356 + chr3L_7_9930001 chr3L_9930001 RAL-138 1296 chr3L 10003127 10003179 chr3L 10003249 10003297 21 122 6.0 9.5 7.8 2.4 170 chr3L 10003127 intron dpr6 + chr3L 10003212 intron dpr6 + chr3L 10003297 intron dpr6 + chr3L_21_10000001 chr3L_10000001 RAL-138 1297 chr3L 10007166 10007197 chr3L 10007294 10007325 6 128 5.0 3.0 4.0 1.2 159 chr3L 10007166 intron dpr6 + chr3L 10007246 intron dpr6 + chr3L 10007325 intron dpr6 + chr3L_6_10005001 chr3L_10005001 RAL-138 1298 chr3L 10043868 10043902 chr3L 10043975 10044008 5 107 0.0 4.5 2.2 1.6 140 chr3L 10043868 intron dpr6 + chr3L 10043938 intron dpr6 + chr3L 10044008 intron dpr6 + chr3L_5_10040001 chr3L_10040001 RAL-138 1299 chr3L 10060090 10060117 chr3L 10067694 10067721 17.6 8 7604 3.5 3.5 3.5 1.8 7631 chr3L 10060090 intron dpr6 + chr3L 10063906 intron dpr6 + chr3L 10067721 intron dpr6 + chr3L_8_10060001 chr3L_10060001 RAL-138 1300 chr3L 10105950 10105967 chr3L 10106013 10106017 4 66 4.5 4.5 4.5 0.7 67 chr3L 10105950 intron dpr6 + chr3L 10105984 intron dpr6 + chr3L 10106017 intron dpr6 + chr3L_4_10105001 chr3L_10105001 RAL-138 1301 chr3L 10148380 10148406 chr3L 10148491 10148515 5 103 12.5 8.5 10.5 0.4 135 chr3L 10148380 3` UTR dpr10 - chr3L 10148448 3` UTR dpr10 - chr3L 10148515 3` UTR dpr10 - chr3L_5_10145001 chr3L_10145001 RAL-138 1302 chr3L 10148407 10148433 chr3L 10148488 10148543 12 107 6.0 7.0 6.5 1.6 136 chr3L 10148407 3` UTR dpr10 - chr3L 10148475 3` UTR dpr10 - chr3L 10148543 3` UTR dpr10 - chr3L_12_10145001 chr3L_10145001 RAL-138 1303 chr3L 10198602 10198632 chr3L 10198705 10198735 13 102 8.5 5.0 6.8 1.7 133 chr3L 10198602 intron ect - chr3L 10198668 intron ect - chr3L 10198735 intron ect - chr3L_13_10195001 chr3L_10195001 RAL-138 1304 chr3L 10198637 10198656 chr3L 10198740 10198759 5 103 2.0 8.5 5.2 0.8 122 chr3L 10198637 intron ect - chr3L 10198698 intron ect - chr3L 10198759 intron ect - chr3L_5_10195001 chr3L_10195001 RAL-138 1305 chr3L 10214711 10214821 chr3L 10214823 10214948 8 134 0.0 0.0 0.0 8.0 237 chr3L 10214711 intergenic not near genes chr3L 10214830 intergenic not near genes chr3L 10214948 intergenic not near genes chr3L_8_10210001 chr3L_10210001 RAL-138 1306 chr3L 10222742 10222776 chr3L 10222847 10222881 6 105 2.5 10.5 6.5 0.8 139 chr3L 10222742 intron scramb1 - chr3L 10222812 intron scramb1 - chr3L 10222881 intron scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-138 1307 chr3L 10269762 10269786 chr3L 10269847 10269895 11 105 2.0 2.0 2.0 3.7 133 chr3L 10269762 5` UTR CR45242 + chr3L 10269828 5` UTR CR45242 + chr3L 10269895 5` UTR CR45242 + chr3L_11_10265001 chr3L_10265001 RAL-138 1308 chr3L 10293945 10293953 chr3L 10294047 10294055 4 102 0.0 6.5 3.2 1.0 110 chr3L 10293945 intergenic not near genes chr3L 10294000 intergenic not near genes chr3L 10294055 intergenic not near genes chr3L_4_10290001 chr3L_10290001 RAL-138 1309 chr3L 10298666 10298687 chr3L 10298778 10298799 4 112 0.0 1.0 0.5 2.7 133 chr3L 10298666 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298799 intergenic not near genes chr3L_4_10295001 chr3L_10295001 RAL-138 1310 chr3L 10308727 10308770 chr3L 10308829 10308872 7 99 1.0 1.5 1.2 3.2 145 chr3L 10308727 intergenic not near genes chr3L 10308800 intergenic not near genes chr3L 10308872 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-138 1311 chr3L 10328098 10328127 chr3L 10328235 10328264 4 137 1.5 7.5 4.5 0.7 166 chr3L 10328098 intergenic not near genes chr3L 10328181 intergenic not near genes chr3L 10328264 intergenic not near genes chr3L_4_10325001 chr3L_10325001 RAL-138 1312 chr3L 10414925 10414967 chr3L 10417322 10417364 Doc 6 2397 4.0 3.5 3.8 1.2 2439 chr3L 10414925 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417364 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-138 1313 chr3L 10417567 10417593 chr3L 10417652 10417695 6 99 3.5 3.0 3.2 1.4 128 chr3L 10417567 intergenic not near genes chr3L 10417631 intergenic not near genes chr3L 10417695 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-138 1314 chr3L 10547592 10547615 chr3L 10547700 10547723 5 108 1.5 1.5 1.5 2.0 131 chr3L 10547592 intron A2bp1 + chr3L 10547658 intron A2bp1 + chr3L 10547723 intron A2bp1 + chr3L_5_10545001 chr3L_10545001 RAL-138 1315 chr3L 10584254 10584302 chr3L 10584366 10584414 33 112 7.5 9.0 8.2 3.6 160 chr3L 10584254 intron A2bp1 + chr3L 10584334 intron A2bp1 + chr3L 10584414 intron A2bp1 + chr3L_33_10580001 chr3L_10580001 RAL-138 1316 chr3L 10600442 10600474 chr3L 10600539 10600581 4 102 2.0 0.5 1.2 1.8 139 chr3L 10600442 intergenic not near genes chr3L 10600512 intergenic not near genes chr3L 10600581 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-138 1317 chr3L 10621825 10621878 chr3L 10621937 10621990 11 111 2.5 5.5 4.0 2.2 165 chr3L 10621825 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621990 intergenic not near genes chr3L_11_10620001 chr3L_10620001 RAL-138 1318 chr3L 10658068 10658194 chr3L 10658169 10658334 9 128 0.0 0.0 0.0 9.0 266 chr3L 10658068 intron CG32066 - chr3L 10658201 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-138 1319 chr3L 10694904 10694925 chr3L 10695021 10695042 4 117 1.0 6.0 3.5 0.9 138 chr3L 10694904 intron NijA - chr3L 10694973 intron NijA - chr3L 10695042 exon NijA - chr3L_4_10690001 chr3L_10690001 RAL-138 1320 chr3L 10718299 10718321 chr3L 10718549 10718601 10 267 3.5 5.0 4.2 1.9 302 chr3L 10718299 intergenic not near genes chr3L 10718450 intergenic not near genes chr3L 10718601 intergenic not near genes chr3L_10_10715001 chr3L_10715001 RAL-138 1321 chr3L 10762829 10762852 chr3L 10762917 10762957 6 93 3.5 5.5 4.5 1.1 128 chr3L 10762829 intergenic not near genes chr3L 10762893 intergenic not near genes chr3L 10762957 intergenic not near genes chr3L_6_10760001 chr3L_10760001 RAL-138 1322 chr3L 10783677 10783710 chr3L 10783781 10783818 8 106 3.0 6.0 4.5 1.5 141 chr3L 10783677 intergenic not near genes chr3L 10783748 intergenic not near genes chr3L 10783818 intergenic not near genes chr3L_8_10780001 chr3L_10780001 RAL-138 1323 chr3L 10888449 10888483 chr3L 10888570 10888604 4 117 2.0 0.0 1.0 2.0 155 chr3L 10888449 intergenic not near genes chr3L 10888526 intergenic not near genes chr3L 10888604 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-138 1324 chr3L 10911673 10911707 chr3L 10911781 10911815 9 108 3.5 4.0 3.8 1.9 142 chr3L 10911673 intergenic not near genes chr3L 10911744 intergenic not near genes chr3L 10911815 intergenic not near genes chr3L_9_10910001 chr3L_10910001 RAL-138 1325 chr3L 10920300 10920317 chr3L 10920383 10920413 8 83 2.0 7.5 4.8 1.4 113 chr3L 10920300 intergenic not near genes chr3L 10920356 intergenic not near genes chr3L 10920413 intergenic not near genes chr3L_8_10920001 chr3L_10920001 RAL-138 1326 chr3L 10942045 10942072 chr3L 10942140 10942151 9 93 10.0 2.5 6.2 1.2 106 chr3L 10942045 intergenic not near genes chr3L 10942098 intergenic not near genes chr3L 10942151 intergenic not near genes chr3L_9_10940001 chr3L_10940001 RAL-138 1327 chr3L 10956985 10957030 chr3L 10957086 10957130 4 95 3.5 6.0 4.8 0.7 145 chr3L 10956985 intergenic not near genes chr3L 10957058 intergenic not near genes chr3L 10957130 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-138 1328 chr3L 10958182 10958228 chr3L 10958289 10958335 4 98 0.5 0.0 0.2 3.3 153 chr3L 10958182 intergenic not near genes chr3L 10958258 intergenic not near genes chr3L 10958335 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-138 1329 chr3L 11087033 11087089 chr3L 11088846 11088903 S-element 14 1810 4.5 6.0 5.2 2.3 1870 chr3L 11087033 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088903 intron JIL-1 - chr3L_14_11085001 chr3L_11085001 RAL-138 1330 chr3L 11127186 11127197 chr3L 11127287 11127296 7 101 4.5 0.0 2.2 2.2 110 chr3L 11127186 intron CG42575 + chr3L 11127241 intron CG42575 + chr3L 11127296 intron CG42575 + chr3L_7_11125001 chr3L_11125001 RAL-138 1331 chr3L 11127899 11127931 chr3L 11128027 11128073 6 131 3.5 0.0 1.8 2.1 174 chr3L 11127899 intron CG42575 + chr3L 11127986 intron CG42575 + chr3L 11128073 intron CG42575 + chr3L_6_11125001 chr3L_11125001 RAL-138 1332 chr3L 11141435 11141463 chr3L 11141555 11141583 11 120 3.0 1.0 2.0 3.7 148 chr3L 11141435 intron CG32082 + chr3L 11141509 intron CG32082 + chr3L 11141583 intron CG32082 + chr3L_11_11140001 chr3L_11140001 RAL-138 1333 chr3L 11145538 11145550 chr3L 11145635 11145665 4 110 0.0 0.5 0.2 3.3 127 chr3L 11145538 intron CG32082 + chr3L 11145602 intron CG32082 + chr3L 11145665 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-138 1334 chr3L 11191025 11191057 chr3L 11191144 11191176 9 119 4.5 4.5 4.5 1.6 151 chr3L 11191025 intron GlcAT-P - chr3L 11191100 intron GlcAT-P - chr3L 11191176 intron GlcAT-P - chr3L_9_11190001 chr3L_11190001 RAL-138 1335 chr3L 11249849 11249878 chr3L 11249957 11249986 4 108 2.0 3.0 2.5 1.1 137 chr3L 11249849 5` UTR CR44717 + chr3L 11249918 5` UTR CR44717 + chr3L 11249986 5` UTR CR44717 + chr3L_4_11245001 chr3L_11245001 RAL-138 1336 chr3L 11264466 11264484 chr3L 11271443 11271460 17.6 5 6974 1.5 1.0 1.2 2.3 6994 chr3L 11264466 intergenic not near genes chr3L 11267963 intergenic not near genes chr3L 11271460 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-138 1337 chr3L 11274065 11274090 chr3L 11274219 11274225 6 150 0.5 6.0 3.2 1.4 160 chr3L 11274065 3` UTR CR44720 - chr3L 11274145 3` UTR CR44720 - chr3L 11274225 3` UTR CR44720 - chr3L_6_11270001 chr3L_11270001 RAL-138 1338 chr3L 11290601 11290657 chr3L 11290949 11291005 21 348 5.0 7.0 6.0 3.0 404 chr3L 11290601 intron CG6175 - chr3L 11290803 intron CG6175 - chr3L 11291005 intron CG6175 - chr3L_21_11290001 chr3L_11290001 RAL-138 1339 chr3L 11329672 11329720 chr3L 11332902 11332950 jockey 10 3228 4.0 4.5 4.2 1.9 3278 chr3L 11329672 intergenic not near genes chr3L 11331311 intergenic not near genes chr3L 11332950 intergenic not near genes chr3L_10_11330001 chr3L_11330001 RAL-138 1340 chr3L 11353128 11353148 chr3L 11353235 11353256 6 108 3.0 2.5 2.8 1.6 128 chr3L 11353128 intergenic not near genes chr3L 11353192 intergenic not near genes chr3L 11353256 intergenic not near genes chr3L_6_11350001 chr3L_11350001 RAL-138 1341 chr3L 11383964 11383995 chr3L 11384045 11384074 9 80 2.5 4.5 3.5 2.0 110 chr3L 11383964 intron CR42755 - chr3L 11384019 3` UTR CR42755 - chr3L 11384074 3` UTR CR42755 - chr3L_9_11380001 chr3L_11380001 RAL-138 1342 chr3L 11404815 11404852 chr3L 11404955 11404983 5 138 1.0 1.5 1.2 2.3 168 chr3L 11404815 intergenic not near genes chr3L 11404899 intergenic not near genes chr3L 11404983 intergenic not near genes chr3L_5_11400001 chr3L_11400001 RAL-138 1343 chr3L 11528205 11528252 chr3L 11528311 11528358 15 106 4.0 1.5 2.8 3.9 153 chr3L 11528205 intron Mob2 - chr3L 11528282 intron Mob2 - chr3L 11528358 intron Mob2 - chr3L_15_11525001 chr3L_11525001 RAL-138 1344 chr3L 11564806 11564812 chr3L 11572412 11572431 412 5 7623 9.0 7.0 8.0 0.6 7625 chr3L 11564806 exon CG33267 + chr3L 11568618 intron CG33267 + chr3L 11572431 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-138 1345 chr3L 11579534 11579570 chr3L 11579665 11579701 8 130 2.5 2.0 2.2 2.5 167 chr3L 11579534 intergenic CG43390 - chr3L 11579618 intergenic CG43390 - chr3L 11579701 intergenic CG43390 - chr3L_8_11575001 chr3L_11575001 RAL-138 1346 chr3L 11701983 11702006 chr3L 11702087 11702110 5 95 8.5 4.5 6.5 0.7 127 chr3L 11701983 intron CG11658 - chr3L 11702046 intron CG11658 - chr3L 11702110 intron CG11658 - chr3L_5_11700001 chr3L_11700001 RAL-138 1347 chr3L 11702008 11702035 chr3L 11702083 11702117 9 82 3.0 3.5 3.2 2.1 109 chr3L 11702008 intron CG11658 - chr3L 11702062 intron CG11658 - chr3L 11702117 intron CG11658 - chr3L_9_11700001 chr3L_11700001 RAL-138 1348 chr3L 11723065 11723110 chr3L 11727885 11727930 Doc 12 4820 6.0 5.0 5.5 1.8 4865 chr3L 11723065 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727930 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 RAL-138 1349 chr3L 11740114 11740126 chr3L 11740237 11740249 7 122 21.0 11.0 16.0 0.4 135 chr3L 11740114 intron CG6024 - chr3L 11740182 intron CG6024 - chr3L 11740249 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-138 1350 chr3L 11740131 11740151 chr3L 11740236 11740274 7 118 13.5 10.0 11.8 0.5 143 chr3L 11740131 intron CG6024 - chr3L 11740202 intron CG6024 - chr3L 11740274 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-138 1351 chr3L 7749470 7749471 chr3L 11777678 11777678 10 4028207 27.0 41.5 34.2 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_10_9760001 chr3L_9760001 RAL-138 1352 chr3L 8095990 8095992 chr3L 11777678 11777678 roo 5 3681687 4.5 41.5 23.0 0.2 3681688 chr3L 8095990 intron Ect4 + chr3L 9936834 intron CG34356 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9935001 chr3L_9935001 RAL-138 1353 chr3L 11777678 11777678 chr3L 12163305 12163305 11 385627 40.0 15.0 27.5 0.4 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_11_11970001 chr3L_11970001 RAL-138 1354 chr3L 11796564 11796601 chr3L 11796667 11796712 17 106 7.5 0.5 4.0 3.4 148 chr3L 11796564 exon Klp68D + chr3L 11796638 intron Klp68D + chr3L 11796712 intron Klp68D + chr3L_17_11795001 chr3L_11795001 RAL-138 1355 chr3L 11811431 11811488 chr3L 11811534 11811591 32 102 5.5 7.0 6.2 4.4 160 chr3L 11811431 intron CG42255 - chr3L 11811511 intron CG42255 - chr3L 11811591 exon CG42255 - chr3L_32_11810001 chr3L_11810001 RAL-138 1356 chr3L 11816783 11816804 chr3L 11816909 11816930 5 126 9.5 7.5 8.5 0.5 147 chr3L 11816783 3` UTR CG5946 - chr3L 11816856 3` UTR CG5946 - chr3L 11816930 3` UTR CG5946 - chr3L_5_11815001 chr3L_11815001 RAL-138 1357 chr3L 11864528 11864583 chr3L 11865848 11865901 pogo 22 1317 10.0 7.5 8.8 2.2 1373 chr3L 11864528 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865901 intron CG44837 - chr3L_22_11865001 chr3L_11865001 RAL-138 1358 chr3L 11887242 11887287 chr3L 11887361 11887418 4 124 2.5 0.0 1.2 1.8 176 chr3L 11887242 intron CG44837 - chr3L 11887330 intron,3` UTR CG44837 -,CG5897 - chr3L 11887418 intron,3` UTR CG44837 -,CG5897 - chr3L_4_11885001 chr3L_11885001 RAL-138 1359 chr3L 12013892 12013936 chr3L 12014008 12014052 29 116 4.0 7.0 5.5 4.5 160 chr3L 12013892 intron rols - chr3L 12013972 intron rols - chr3L 12014052 intron rols - chr3L_29_12010001 chr3L_12010001 RAL-138 1360 chr3L 12052687 12052737 chr3L 12052800 12052850 11 114 2.5 2.5 2.5 3.1 163 chr3L 12052687 intron rols - chr3L 12052768 intron rols - chr3L 12052850 intron rols - chr3L_11_12050001 chr3L_12050001 RAL-138 1361 chr3L 12075401 12075460 chr3L 12075515 12075569 15 112 7.5 0.0 3.8 3.1 168 chr3L 12075401 intron Sema-5c - chr3L 12075485 intron Sema-5c - chr3L 12075569 intron Sema-5c - chr3L_15_12075001 chr3L_12075001 RAL-138 1362 chr3L 12089064 12089111 chr3L 12089169 12089216 9 105 1.0 1.5 1.2 4.1 152 chr3L 12089064 exon CG17154 + chr3L 12089140 3` UTR CG17154 + chr3L 12089216 3` UTR CG17154 + chr3L_9_12085001 chr3L_12085001 RAL-138 1363 chr3L 12125286 12125333 chr3L 12125391 12125438 13 105 2.5 4.5 3.5 2.9 152 chr3L 12125286 intergenic yps -,Ir68b - chr3L 12125362 intergenic Ir68b -,yps - chr3L 12125438 intergenic Ir68b -,yps - chr3L_13_12125001 chr3L_12125001 RAL-138 1364 chr3L 12186342 12186395 chr3L 12186461 12186536 4 130 4.5 0.0 2.2 1.2 194 chr3L 12186342 intron CG6910 + chr3L 12186439 intron CG6910 + chr3L 12186536 exon CG6910 + chr3L_4_12185001 chr3L_12185001 RAL-138 1365 chr3L 12304069 12304118 chr3L 12304167 12304219 19 100 4.5 7.5 6.0 2.7 150 chr3L 12304069 intergenic not near genes chr3L 12304144 intergenic not near genes chr3L 12304219 intergenic not near genes chr3L_19_12300001 chr3L_12300001 RAL-138 1366 chr3L 12353896 12353949 chr3L 12354009 12354062 10 106 0.5 2.0 1.2 4.5 166 chr3L 12353896 intergenic not near genes chr3L 12353979 intergenic not near genes chr3L 12354062 intergenic not near genes chr3L_10_12350001 chr3L_12350001 RAL-138 1367 chr3L 12356450 12356501 chr3L 12356626 12356678 9 172 2.5 3.5 3.0 2.2 228 chr3L 12356450 intergenic not near genes chr3L 12356564 intergenic not near genes chr3L 12356678 intergenic not near genes chr3L_9_12355001 chr3L_12355001 RAL-138 1368 chr3L 12369521 12369555 chr3L 12369634 12369670 5 113 3.5 3.0 3.2 1.2 149 chr3L 12369521 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369670 intron Ncc69 - chr3L_5_12365001 chr3L_12365001 RAL-138 1369 chr3L 12381516 12381538 chr3L 12381618 12381641 5 103 3.0 1.0 2.0 1.7 125 chr3L 12381516 intron Ncc69 - chr3L 12381578 intron Ncc69 - chr3L 12381641 intron Ncc69 - chr3L_5_12380001 chr3L_12380001 RAL-138 1370 chr3L 12430170 12430212 chr3L 12430280 12430322 21 110 10.0 7.5 8.8 2.1 152 chr3L 12430170 intron toe - chr3L 12430246 intron toe - chr3L 12430322 intron toe - chr3L_21_12430001 chr3L_12430001 RAL-138 1371 chr3L 12437308 12437345 chr3L 12437422 12437459 9 114 5.5 11.0 8.2 1.0 151 chr3L 12437308 intergenic not near genes chr3L 12437384 intergenic not near genes chr3L 12437459 intergenic not near genes chr3L_9_12435001 chr3L_12435001 RAL-138 1372 chr3L 12460310 12460334 chr3L 12460412 12460436 7 102 0.0 7.0 3.5 1.6 126 chr3L 12460310 intergenic not near genes chr3L 12460373 intergenic not near genes chr3L 12460436 intergenic not near genes chr3L_7_12460001 chr3L_12460001 RAL-138 1373 chr3L 12578045 12578070 chr3L 12578158 12578183 6 113 2.5 0.0 1.2 2.7 138 chr3L 12578045 intergenic not near genes chr3L 12578114 intergenic not near genes chr3L 12578183 intergenic not near genes chr3L_6_12575001 chr3L_12575001 RAL-138 1374 chr3L 12587355 12587378 chr3L 12587463 12587485 6 108 0.5 0.0 0.2 5.0 130 chr3L 12587355 intron ara + chr3L 12587420 intron ara + chr3L 12587485 intron ara + chr3L_6_12585001 chr3L_12585001 RAL-138 1375 chr3L 12628506 12628522 chr3L 12628623 12628639 5 117 0.0 4.0 2.0 1.7 133 chr3L 12628506 intron CR32111 + chr3L 12628572 intron CR32111 + chr3L 12628639 intron CR32111 + chr3L_5_12625001 chr3L_12625001 RAL-138 1376 chr3L 12647924 12647954 chr3L 12648024 12648053 6 100 4.5 0.5 2.5 1.7 129 chr3L 12647924 5` UTR CR32111 + chr3L 12647988 5` UTR CR32111 + chr3L 12648053 5` UTR CR32111 + chr3L_6_12645001 chr3L_12645001 RAL-138 1377 chr3L 12654367 12654409 chr3L 12654472 12654501 5 102 0.5 4.0 2.2 1.6 134 chr3L 12654367 intergenic not near genes chr3L 12654434 intergenic not near genes chr3L 12654501 intergenic not near genes chr3L_5_12650001 chr3L_12650001 RAL-138 1378 chr3L 12675297 12675326 chr3L 12675403 12675432 7 104 3.0 4.0 3.5 1.6 135 chr3L 12675297 intergenic not near genes chr3L 12675364 intergenic not near genes chr3L 12675432 intergenic not near genes chr3L_7_12675001 chr3L_12675001 RAL-138 1379 chr3L 12801969 12802010 chr3L 12802070 12802111 7 101 1.0 0.0 0.5 4.7 142 chr3L 12801969 intron Atg1 - chr3L 12802040 intron Atg1 - chr3L 12802111 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-138 1380 chr3L 12803982 12804025 chr3L 12804151 12804171 7 166 0.5 5.0 2.8 1.8 189 chr3L 12803982 intron Atg1 - chr3L 12804076 intron Atg1 - chr3L 12804171 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-138 1381 chr3L 12846079 12846100 chr3L 12846155 12846203 4 96 1.5 1.5 1.5 1.6 124 chr3L 12846079 intron CG10948 - chr3L 12846141 intron CG10948 - chr3L 12846203 intron CG10948 - chr3L_4_12845001 chr3L_12845001 RAL-138 1382 chr3L 12857976 12858003 chr3L 12858095 12858122 6 119 0.0 1.5 0.8 3.3 146 chr3L 12857976 3` UTR CG32107 - chr3L 12858049 3` UTR CG32107 - chr3L 12858122 3` UTR CG32107 - chr3L_6_12855001 chr3L_12855001 RAL-138 1383 chr3L 12874928 12874955 chr3L 12877245 12877272 jockey 5 2315 0.0 3.5 1.8 1.8 2344 chr3L 12874928 intergenic not near genes chr3L 12876100 intergenic not near genes chr3L 12877272 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-138 1384 chr3L 12894784 12894816 chr3L 12894886 12894914 8 101 5.0 6.5 5.8 1.2 130 chr3L 12894784 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894914 intergenic CG14118 + chr3L_8_12890001 chr3L_12890001 RAL-138 1385 chr3L 12928211 12928230 chr3L 12928363 12928382 5 152 1.0 2.5 1.8 1.8 171 chr3L 12928211 intergenic not near genes chr3L 12928296 intergenic not near genes chr3L 12928382 intergenic not near genes chr3L_5_12925001 chr3L_12925001 RAL-138 1386 chr3L 12955107 12955162 chr3L 12955208 12955263 12 99 1.0 3.0 2.0 4.0 156 chr3L 12955107 intergenic CG10752 - chr3L 12955185 intergenic not near genes chr3L 12955263 intergenic not near genes chr3L_12_12955001 chr3L_12955001 RAL-138 1387 chr3L 13007677 13007726 chr3L 13007780 13007812 10 102 2.0 2.5 2.2 3.1 135 chr3L 13007677 exon CG11263 + chr3L 13007744 3` UTR CG11263 + chr3L 13007812 3` UTR CG11263 + chr3L_10_13005001 chr3L_13005001 RAL-138 1388 chr3L 13026540 13026577 chr3L 13026656 13026692 9 116 2.5 1.5 2.0 3.0 152 chr3L 13026540 intergenic Zmynd10 - chr3L 13026616 intergenic Zmynd10 - chr3L 13026692 intergenic Zmynd10 - chr3L_9_13025001 chr3L_13025001 RAL-138 1389 chr3L 13085052 13085061 chr3L 13085156 13085165 4 104 2.5 2.0 2.2 1.2 113 chr3L 13085052 intergenic not near genes chr3L 13085108 intergenic not near genes chr3L 13085165 intergenic not near genes chr3L_4_13085001 chr3L_13085001 RAL-138 1390 chr3L 13144094 13144146 chr3L 13144196 13144248 7 102 1.0 2.0 1.5 2.8 154 chr3L 13144094 intergenic not near genes chr3L 13144171 intergenic not near genes chr3L 13144248 intergenic not near genes chr3L_7_13140001 chr3L_13140001 RAL-138 1391 chr3L 13204100 13204114 chr3L 13204214 13204222 5 112 3.5 1.5 2.5 1.4 122 chr3L 13204100 intergenic not near genes chr3L 13204161 intergenic not near genes chr3L 13204222 intergenic not near genes chr3L_5_13200001 chr3L_13200001 RAL-138 1392 chr3L 13206214 13206265 chr3L 13206318 13206372 14 104 1.5 4.5 3.0 3.5 158 chr3L 13206214 intergenic not near genes chr3L 13206293 intergenic not near genes chr3L 13206372 intergenic not near genes chr3L_14_13205001 chr3L_13205001 RAL-138 1393 chr3L 13213716 13213759 chr3L 13213803 13213825 9 85 3.0 4.5 3.8 1.9 109 chr3L 13213716 intergenic not near genes chr3L 13213770 intergenic not near genes chr3L 13213825 intergenic not near genes chr3L_9_13210001 chr3L_13210001 RAL-138 1394 chr3L 13265170 13265194 chr3L 13265273 13265287 5 96 5.5 2.0 3.8 1.0 117 chr3L 13265170 intron caps + chr3L 13265228 5` UTR caps + chr3L 13265287 5` UTR caps + chr3L_5_13265001 chr3L_13265001 RAL-138 1395 chr3L 13296507 13296527 chr3L 13296623 13296643 4 116 3.0 1.5 2.2 1.2 136 chr3L 13296507 intergenic Sfp70A4 -,CR45253 + chr3L 13296575 3` UTR Sfp70A4 - chr3L 13296643 3` UTR Sfp70A4 - chr3L_4_13295001 chr3L_13295001 RAL-138 1396 chr3L 13311784 13311811 chr3L 13311887 13311914 5 103 1.5 3.0 2.2 1.6 130 chr3L 13311784 intergenic not near genes chr3L 13311849 intergenic not near genes chr3L 13311914 intergenic not near genes chr3L_5_13310001 chr3L_13310001 RAL-138 1397 chr3L 13338625 13338654 chr3L 13338727 13338755 4 102 1.5 3.5 2.5 1.1 130 chr3L 13338625 intergenic not near genes chr3L 13338690 intergenic not near genes chr3L 13338755 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-138 1398 chr3L 13400517 13400543 chr3L 13400602 13400642 15 97 3.5 7.0 5.2 2.4 125 chr3L 13400517 intron sens - chr3L 13400580 intron sens - chr3L 13400642 intron sens - chr3L_15_13400001 chr3L_13400001 RAL-138 1399 chr3L 13492060 13492114 chr3L 13492160 13492199 10 96 5.0 6.5 5.8 1.5 139 chr3L 13492060 intron Tgi + chr3L 13492130 intron Tgi + chr3L 13492199 intron Tgi + chr3L_10_13490001 chr3L_13490001 RAL-138 1400 chr3L 13525138 13525186 chr3L 13532959 13532966 roo 16 7815 7.5 14.5 11.0 1.3 7828 chr3L 13525138 intergenic not near genes chr3L 13529052 intergenic not near genes chr3L 13532966 intergenic not near genes chr3L_16_13525001 chr3L_13525001 RAL-138 1401 chr3L 13617519 13617564 chr3L 13617622 13617667 6 101 3.0 0.0 1.5 2.4 148 chr3L 13617519 intron bru-3 - chr3L 13617593 intron bru-3 - chr3L 13617667 intron bru-3 - chr3L_6_13615001 chr3L_13615001 RAL-138 1402 chr3L 13674246 13674290 chr3L 13674356 13674400 8 110 1.5 3.0 2.2 2.5 154 chr3L 13674246 intron bru-3 - chr3L 13674323 intron bru-3 - chr3L 13674400 intron bru-3 - chr3L_8_13670001 chr3L_13670001 RAL-138 1403 chr3L 13726596 13726635 chr3L 13726706 13726747 6 107 5.0 1.5 3.2 1.4 151 chr3L 13726596 intron bru-3 - chr3L 13726672 intron bru-3 - chr3L 13726747 intron bru-3 - chr3L_6_13725001 chr3L_13725001 RAL-138 1404 chr3L 13740007 13740039 chr3L 13740124 13740155 4 117 6.0 3.5 4.8 0.7 148 chr3L 13740007 intron bru-3 - chr3L 13740081 intron bru-3 - chr3L 13740155 intron bru-3 - chr3L_4_13740001 chr3L_13740001 RAL-138 1405 chr3L 13745283 13745307 chr3L 13745396 13745421 4 114 3.0 2.0 2.5 1.1 138 chr3L 13745283 intron bru-3 - chr3L 13745352 intron bru-3 - chr3L 13745421 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-138 1406 chr3L 13804524 13804572 chr3L 13822835 13822882 roo 4 18310 4.0 2.5 3.2 1.0 18358 chr3L 13804524 intergenic not near genes chr3L 13813703 intergenic not near genes chr3L 13822882 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-138 1407 chr3L 13871714 13871764 chr3L 13871817 13871867 26 101 8.0 11.5 9.8 2.4 153 chr3L 13871714 3` UTR dysc - chr3L 13871790 3` UTR dysc - chr3L 13871867 3` UTR dysc - chr3L_26_13870001 chr3L_13870001 RAL-138 1408 chr3L 13884355 13884387 chr3L 13884471 13884503 11 116 7.0 5.0 6.0 1.6 148 chr3L 13884355 intron dysc - chr3L 13884429 intron dysc - chr3L 13884503 intron dysc - chr3L_11_13880001 chr3L_13880001 RAL-138 1409 chr3L 13901544 13901600 chr3L 13901646 13901702 12 102 1.5 5.5 3.5 2.7 158 chr3L 13901544 intron dysc - chr3L 13901623 intron dysc - chr3L 13901702 5` UTR dysc - chr3L_12_13900001 chr3L_13900001 RAL-138 1410 chr3L 14076055 14076083 chr3L 14076159 14076187 6 104 1.5 2.0 1.8 2.1 132 chr3L 14076055 3` UTR,intron Pex1 +,btl + chr3L 14076121 3` UTR,intron Pex1 +,btl + chr3L 14076187 intron btl + chr3L_6_14075001 chr3L_14075001 RAL-138 1411 chr3L 14175348 14175362 chr3L 14175521 14175535 11 173 9.5 8.0 8.8 1.1 187 chr3L 14175348 intergenic D - chr3L 14175442 intergenic D - chr3L 14175535 intergenic D - chr3L_11_14175001 chr3L_14175001 RAL-138 1412 chr3L 14245548 14245584 chr3L 14245667 14245703 1360 4 111 4.0 1.5 2.8 1.1 155 chr3L 14245548 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245703 intergenic CR44561 -,CR44560 + chr3L_4_14245001 chr3L_14245001 RAL-138 1413 chr3L 14312044 14312056 chr3L 14316835 14316857 X-element 7 4804 3.0 6.0 4.5 1.3 4813 chr3L 14312044 exon fz + chr3L 14314450 intron fz + chr3L 14316857 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-138 1414 chr3L 14326940 14326997 chr3L 14327101 14327158 17 160 2.5 3.5 3.0 4.2 218 chr3L 14326940 intron fz + chr3L 14327049 intron fz + chr3L 14327158 intron fz + chr3L_17_14325001 chr3L_14325001 RAL-138 1415 chr3L 14356529 14356533 chr3L 14356634 14356638 4 105 4.5 6.5 5.5 0.6 109 chr3L 14356529 intron fz + chr3L 14356584 intron fz + chr3L 14356638 intron fz + chr3L_4_14355001 chr3L_14355001 RAL-138 1416 chr3L 14356535 14356551 chr3L 14356627 14356656 8 100 2.0 5.5 3.8 1.7 121 chr3L 14356535 intron fz + chr3L 14356596 intron fz + chr3L 14356656 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-138 1417 chr3L 14392499 14392512 chr3L 14396176 14396188 4 3677 28.5 31.0 29.8 0.1 3689 chr3L 14392499 intergenic not near genes chr3L 14394344 intergenic not near genes chr3L 14396188 intergenic not near genes chr3L_4_14390001 chr3L_14390001 RAL-138 1418 chr3L 14392495 14392523 chr3L 14396191 14396229 17 3690 32.5 31.0 31.8 0.5 3734 chr3L 14392495 intergenic not near genes chr3L 14394362 intergenic not near genes chr3L 14396229 intergenic not near genes chr3L_17_14390001 chr3L_14390001 RAL-138 1419 chr3L 14468433 14468471 chr3L 14473664 14473702 copia 7 5229 0.5 6.5 3.5 1.6 5269 chr3L 14468433 intron bbg - chr3L 14471068 intron bbg - chr3L 14473702 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-138 1420 chr3L 14485995 14486043 chr3L 14486099 14486149 9 101 1.5 2.0 1.8 3.2 154 chr3L 14485995 intron bbg - chr3L 14486072 intron bbg - chr3L 14486149 intron bbg - chr3L_9_14485001 chr3L_14485001 RAL-138 1421 chr3L 14522081 14522118 chr3L 14522205 14522242 4 124 0.5 3.5 2.0 1.3 161 chr3L 14522081 intron bbg - chr3L 14522162 intron bbg - chr3L 14522242 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-138 1422 chr3L 14546807 14546817 chr3L 14546925 14546942 9 124 0.0 13.5 6.8 1.2 135 chr3L 14546807 intron CG9238 - chr3L 14546874 intron CG9238 - chr3L 14546942 intron CG9238 - chr3L_9_14545001 chr3L_14545001 RAL-138 1423 chr3L 14596126 14596141 chr3L 14596231 14596246 6 105 0.0 0.0 0.0 6.0 120 chr3L 14596126 intron HGTX - chr3L 14596186 intron HGTX - chr3L 14596246 intron HGTX - chr3L_6_14595001 chr3L_14595001 RAL-138 1424 chr3L 14725579 14725629 chr3L 14728598 14728605 Doc 6 3012 4.0 4.5 4.2 1.2 3026 chr3L 14725579 intron ome + chr3L 14727092 intron ome + chr3L 14728605 intron ome + chr3L_6_14725001 chr3L_14725001 RAL-138 1425 chr3L 14970749 14970764 chr3L 14971084 14971099 F-element 4 335 0.0 6.0 3.0 1.0 350 chr3L 14970749 intergenic Tom + chr3L 14970924 intergenic not near genes chr3L 14971099 intergenic not near genes chr3L_4_14970001 chr3L_14970001 RAL-138 1426 chr3L 15048472 15048515 chr3L 15048607 15048622 6 130 2.0 5.0 3.5 1.3 150 chr3L 15048472 intron Sytbeta - chr3L 15048547 intron Sytbeta - chr3L 15048622 intron Sytbeta - chr3L_6_15045001 chr3L_15045001 RAL-138 1427 chr3L 15233535 15233555 chr3L 15233641 15233661 5 106 1.5 1.5 1.5 2.0 126 chr3L 15233535 intergenic not near genes chr3L 15233598 intergenic not near genes chr3L 15233661 intergenic not near genes chr3L_5_15230001 chr3L_15230001 RAL-138 1428 chr3L 15257413 15257427 chr3L 15257651 15257665 7 238 6.0 3.5 4.8 1.2 252 chr3L 15257413 intergenic not near genes chr3L 15257539 intergenic not near genes chr3L 15257665 intergenic not near genes chr3L_7_15255001 chr3L_15255001 RAL-138 1429 chr3L 15291447 15291498 chr3L 15291558 15291609 7 110 2.0 2.5 2.2 2.2 162 chr3L 15291447 intergenic not near genes chr3L 15291528 intergenic not near genes chr3L 15291609 intergenic not near genes chr3L_7_15290001 chr3L_15290001 RAL-138 1430 chr3L 15295755 15295800 chr3L 15298623 15298668 gypsy5 4 2868 1.0 3.5 2.2 1.2 2913 chr3L 15295755 intergenic not near genes chr3L 15297212 intergenic not near genes chr3L 15298668 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-138 1431 chr3L 15333137 15333164 chr3L 15333240 15333271 6 101 1.5 7.0 4.2 1.2 134 chr3L 15333137 intergenic CR43247 + chr3L 15333204 intergenic CR43247 + chr3L 15333271 intergenic CR43247 + chr3L_6_15330001 chr3L_15330001 RAL-138 1432 chr3L 15350741 15350795 chr3L 15350842 15350896 25 100 10.0 9.5 9.8 2.3 155 chr3L 15350741 intergenic not near genes chr3L 15350818 intergenic not near genes chr3L 15350896 intergenic not near genes chr3L_25_15350001 chr3L_15350001 RAL-138 1433 chr3L 15384939 15384982 chr3L 15385092 15385109 12 146 2.0 2.0 2.0 4.0 170 chr3L 15384939 intergenic not near genes chr3L 15385024 intergenic not near genes chr3L 15385109 intergenic not near genes chr3L_12_15385001 chr3L_15385001 RAL-138 1434 chr3L 15423740 15423783 chr3L 15426609 15426652 opus 9 2869 0.5 1.0 0.8 5.0 2912 chr3L 15423740 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426652 intergenic not near genes chr3L_9_15425001 chr3L_15425001 RAL-138 1435 chr3L 15486019 15486046 chr3L 15486135 15486162 6 116 4.5 0.0 2.2 1.9 143 chr3L 15486019 intergenic not near genes chr3L 15486090 intergenic not near genes chr3L 15486162 intergenic not near genes chr3L_6_15485001 chr3L_15485001 RAL-138 1436 chr3L 15493289 15493345 chr3L 15493409 15493465 4 120 5.0 0.0 2.5 1.1 176 chr3L 15493289 exon CG12355 - chr3L 15493377 intron CG12355 - chr3L 15493465 intron CG12355 - chr3L_4_15490001 chr3L_15490001 RAL-138 1437 chr3L 15600175 15600194 chr3L 15600301 15600320 9 126 6.5 2.5 4.5 1.6 145 chr3L 15600175 intron RhoGAP71E + chr3L 15600248 intron RhoGAP71E + chr3L 15600320 intron RhoGAP71E + chr3L_9_15600001 chr3L_15600001 RAL-138 1438 chr3L 15726491 15726546 chr3L 15726603 15726655 11 109 5.5 6.5 6.0 1.6 164 chr3L 15726491 intron comm - chr3L 15726573 intron comm - chr3L 15726655 intron comm - chr3L_11_15725001 chr3L_15725001 RAL-138 1439 chr3L 15769394 15769440 chr3L 15769498 15769518 8 102 1.5 5.0 3.2 1.9 124 chr3L 15769394 intergenic not near genes chr3L 15769456 intergenic not near genes chr3L 15769518 intergenic not near genes chr3L_8_15765001 chr3L_15765001 RAL-138 1440 chr3L 15833799 15833852 chr3L 15834013 15834066 8 214 15.5 20.5 18.0 0.4 267 chr3L 15833799 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833932 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834066 3` UTR CG18081 - chr3L_8_15830001 chr3L_15830001 RAL-138 1441 chr3L 15834982 15835005 chr3L 15835146 15835148 6 170 3.0 3.5 3.2 1.4 166 chr3L 15834982 intron CG18081 - chr3L 15835065 intron CG18081 - chr3L 15835148 intron CG18081 - chr3L_6_15835001 chr3L_15835001 RAL-138 1442 chr3L 15871569 15871606 chr3L 15871678 15871715 6 109 5.0 0.0 2.5 1.7 146 chr3L 15871569 intron pHCl - chr3L 15871642 intron pHCl - chr3L 15871715 intron pHCl - chr3L_6_15870001 chr3L_15870001 RAL-138 1443 chr3L 15883196 15883223 chr3L 15883497 15883506 6 306 1.0 2.0 1.5 2.4 310 chr3L 15883196 intron pHCl - chr3L 15883351 intron pHCl - chr3L 15883506 intron pHCl - chr3L_6_15880001 chr3L_15880001 RAL-138 1444 chr3L 15899221 15899262 chr3L 15899789 15899811 jockey 11 572 3.0 4.0 3.5 2.4 590 chr3L 15899221 intergenic pHCl - chr3L 15899516 intergenic pHCl - chr3L 15899811 intergenic sff - chr3L_11_15895001 chr3L_15895001 RAL-138 1445 chr3L 15907499 15907513 chr3L 15908579 15908612 10 1097 0.0 12.5 6.2 1.4 1113 chr3L 15907499 intron sff - chr3L 15908056 intron sff - chr3L 15908612 intron sff - chr3L_10_15905001 chr3L_15905001 RAL-138 1446 chr3L 15950027 15950059 chr3L 15950118 15950159 9 99 2.0 6.0 4.0 1.8 132 chr3L 15950027 intron Pka-C3 - chr3L 15950093 intron Pka-C3 - chr3L 15950159 intron Pka-C3 - chr3L_9_15950001 chr3L_15950001 RAL-138 1447 chr3L 15966525 15966551 chr3L 15968889 15968942 18 2368 51.0 40.5 45.8 0.4 2417 chr3L 15966525 exon l(3)72Ab - chr3L 15967734 exon l(3)72Ab - chr3L 15968942 intron CG10516 + chr3L_18_15965001 chr3L_15965001 RAL-138 1448 chr3L 11075104 11075112 chr3L 15976331 15976342 roo 4 4901228 28.5 28.5 28.5 0.1 4901238 chr3L 11075104 exon CG7839 + chr3L 13525723 intergenic not near genes chr3L 15976342 intron,exon brm -,CG17026 + chr3L_4_13525001 chr3L_13525001 RAL-138 1449 chr3L 15981652 15981687 chr3L 15981763 15981799 17 111 13.0 5.0 9.0 1.7 147 chr3L 15981652 intron,3` UTR brm -,CG17027 + chr3L 15981726 intron,3` UTR brm -,CG17027 + chr3L 15981799 intron,3` UTR brm -,CG17027 + chr3L_17_15980001 chr3L_15980001 RAL-138 1450 chr3L 15989211 15989227 chr3L 15989318 15989335 12 108 7.5 6.5 7.0 1.5 124 chr3L 15989211 intron Hip14 + chr3L 15989273 intron Hip14 + chr3L 15989335 intron Hip14 + chr3L_12_15985001 chr3L_15985001 RAL-138 1451 chr3L 12996716 12996725 chr3L 16019160 16019170 4 3022444 9.0 17.0 13.0 0.3 3022454 chr3L 12996716 exon CG11262 + chr3L 14507943 exon bbg - chr3L 16019170 intergenic not near genes chr3L_4_14505001 chr3L_14505001 RAL-138 1452 chr3L 16047763 16047769 chr3L 16047867 16047873 4 104 0.0 3.5 1.8 1.4 110 chr3L 16047763 intron th - chr3L 16047818 intron th - chr3L 16047873 intron th - chr3L_4_16045001 chr3L_16045001 RAL-138 1453 chr3L 16114043 16114095 chr3L 16114353 16114376 30 308 10.5 15.0 12.8 2.2 333 chr3L 16114043 5` UTR Taf4 + chr3L 16114210 intron Taf4 + chr3L 16114376 5` UTR Taf4 + chr3L_30_16110001 chr3L_16110001 RAL-138 1454 chr3L 16162600 16162618 chr3L 16162707 16162727 4 108 1.0 3.0 2.0 1.3 127 chr3L 16162600 intron CG5151 - chr3L 16162664 intron CG5151 - chr3L 16162727 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-138 1455 chr3L 16184086 16184136 chr3L 16188929 16188953 X-element 22 4842 4.0 4.0 4.0 4.4 4867 chr3L 16184086 intergenic not near genes chr3L 16186520 intergenic not near genes chr3L 16188953 intergenic not near genes chr3L_22_16185001 chr3L_16185001 RAL-138 1456 chr3L 16232702 16232749 chr3L 16232816 16232820 5 105 2.0 0.5 1.2 2.3 118 chr3L 16232702 3` UTR MED10 + chr3L 16232761 3` UTR MED10 + chr3L 16232820 intergenic MED10 +,Hsc20 + chr3L_5_16230001 chr3L_16230001 RAL-138 1457 chr3L 16286420 16286435 chr3L 16286804 16286818 12 384 21.5 6.5 14.0 0.8 398 chr3L 16286420 intergenic not near genes chr3L 16286619 intergenic not near genes chr3L 16286818 intergenic not near genes chr3L_12_16285001 chr3L_16285001 RAL-138 1458 chr3L 16286441 16286468 chr3L 16286826 16286853 16 385 11.5 13.0 12.2 1.2 412 chr3L 16286441 intergenic not near genes chr3L 16286647 intergenic not near genes chr3L 16286853 intergenic not near genes chr3L_16_16285001 chr3L_16285001 RAL-138 1459 chr3L 16286470 16286477 chr3L 16286823 16286862 5 379 9.0 12.0 10.5 0.4 392 chr3L 16286470 intergenic not near genes chr3L 16286666 intergenic not near genes chr3L 16286862 intergenic not near genes chr3L_5_16285001 chr3L_16285001 RAL-138 1460 chr3L 16322797 16322854 chr3L 16322912 16322951 20 111 5.0 5.0 5.0 3.3 154 chr3L 16322797 intergenic not near genes chr3L 16322874 intergenic not near genes chr3L 16322951 intergenic not near genes chr3L_20_16320001 chr3L_16320001 RAL-138 1461 chr3L 16427069 16427123 chr3L 16427175 16427206 16 104 6.0 4.5 5.2 2.6 137 chr3L 16427069 intron,intron CG33158 +,dsx-c73A - chr3L 16427138 intron,intron CG33158 +,dsx-c73A - chr3L 16427206 intron,intron CG33158 +,dsx-c73A - chr3L_16_16425001 chr3L_16425001 RAL-138 1462 chr3L 16439184 16439230 chr3L 16439289 16439335 13 104 1.0 1.0 1.0 6.5 151 chr3L 16439184 intron,intron CG33158 +,dsx-c73A - chr3L 16439260 intron,intron CG33158 +,dsx-c73A - chr3L 16439335 intron,intron CG33158 +,dsx-c73A - chr3L_13_16435001 chr3L_16435001 RAL-138 1463 chr3L 16443820 16443878 chr3L 16446189 16446243 Doc 4 2371 0.0 3.0 1.5 1.6 2423 chr3L 16443820 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446243 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-138 1464 chr3L 16457507 16457558 chr3L 16457628 16457678 7 120 0.5 3.0 1.8 2.5 171 chr3L 16457507 intron CG33158 + chr3L 16457592 intron CG33158 + chr3L 16457678 intron CG33158 + chr3L_7_16455001 chr3L_16455001 RAL-138 1465 chr3L 16493953 16494002 chr3L 16494495 16494543 jockey 15 541 8.0 7.5 7.8 1.7 590 chr3L 16493953 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494248 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494543 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_15_16490001 chr3L_16490001 RAL-138 1466 chr3L 16506125 16506141 chr3L 16506295 16506311 5 170 0.0 6.0 3.0 1.2 186 chr3L 16506125 intron CG43373 - chr3L 16506218 intron CG43373 - chr3L 16506311 intron CG43373 - chr3L_5_16505001 chr3L_16505001 RAL-138 1467 chr3L 16521789 16521833 chr3L 16521907 16521951 21 117 6.0 11.0 8.5 2.2 162 chr3L 16521789 intron CG43373 - chr3L 16521870 intron CG43373 - chr3L 16521951 intron CG43373 - chr3L_21_16520001 chr3L_16520001 RAL-138 1468 chr3L 16539915 16539926 chr3L 16540051 16540062 5 136 1.5 2.5 2.0 1.7 147 chr3L 16539915 intron CG43373 - chr3L 16539988 intron CG43373 - chr3L 16540062 intron CG43373 - chr3L_5_16535001 chr3L_16535001 RAL-138 1469 chr3L 16560295 16560299 chr3L 16560389 16560409 4 105 9.5 3.0 6.2 0.6 114 chr3L 16560295 intergenic not near genes chr3L 16560352 intergenic not near genes chr3L 16560409 intergenic not near genes chr3L_4_16560001 chr3L_16560001 RAL-138 1470 chr3L 16560301 16560335 chr3L 16560392 16560445 16 105 3.5 3.0 3.2 3.8 144 chr3L 16560301 intergenic not near genes chr3L 16560373 intergenic not near genes chr3L 16560445 intergenic not near genes chr3L_16_16560001 chr3L_16560001 RAL-138 1471 chr3L 16571546 16571588 chr3L 16571652 16571694 8 106 4.0 2.0 3.0 2.0 148 chr3L 16571546 intron Mipp1 - chr3L 16571620 intron Mipp1 - chr3L 16571694 intron Mipp1 - chr3L_8_16570001 chr3L_16570001 RAL-138 1472 chr3L 16581743 16581797 chr3L 16582129 16582175 31 387 9.0 11.0 10.0 2.8 432 chr3L 16581743 5` UTR CR43727 + chr3L 16581959 5` UTR CR43727 + chr3L 16582175 5` UTR CR43727 + chr3L_31_16580001 chr3L_16580001 RAL-138 1473 chr3L 16616491 16616504 chr3L 16621844 16621855 297 5 5352 17.5 9.5 13.5 0.3 5364 chr3L 16616491 3` UTR Abl - chr3L 16619173 3` UTR Abl - chr3L 16621855 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-138 1474 chr3L 16616505 16616538 chr3L 16621837 16621872 297 17 5346 8.5 5.5 7.0 2.1 5367 chr3L 16616505 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621872 3` UTR Abl - chr3L_17_16615001 chr3L_16615001 RAL-138 1475 chr3L 16708502 16708548 chr3L 16708638 16708687 12 138 2.5 2.0 2.2 3.8 185 chr3L 16708502 intron,intron Lasp -,CG43954 - chr3L 16708594 intron,intron Lasp -,CG43954 - chr3L 16708687 intron,intron Lasp -,CG43954 - chr3L_12_16705001 chr3L_16705001 RAL-138 1476 chr3L 16745551 16745567 chr3L 16745653 16745669 4 102 3.0 3.0 3.0 1.0 118 chr3L 16745551 intergenic not near genes chr3L 16745610 intergenic not near genes chr3L 16745669 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-138 1477 chr3L 16745570 16745603 chr3L 16745646 16745705 12 98 2.5 2.0 2.2 3.8 135 chr3L 16745570 intergenic not near genes chr3L 16745638 intergenic not near genes chr3L 16745705 intergenic not near genes chr3L_12_16745001 chr3L_16745001 RAL-138 1478 chr3L 16760823 16760876 chr3L 16760988 16761039 5 161 1.5 1.0 1.2 2.3 216 chr3L 16760823 intergenic not near genes chr3L 16760931 intergenic not near genes chr3L 16761039 intergenic not near genes chr3L_5_16760001 chr3L_16760001 RAL-138 1479 chr3L 16821273 16821287 chr3L 16821379 16821396 5 108 10.5 4.5 7.5 0.6 123 chr3L 16821273 intron CG13024 - chr3L 16821334 intron CG13024 - chr3L 16821396 intron CG13024 - chr3L_5_16820001 chr3L_16820001 RAL-138 1480 chr3L 16830751 16830783 chr3L 16830859 16830891 6 108 1.5 2.5 2.0 2.0 140 chr3L 16830751 intergenic not near genes chr3L 16830821 intergenic not near genes chr3L 16830891 intergenic not near genes chr3L_6_16830001 chr3L_16830001 RAL-138 1481 chr3L 16836291 16836348 chr3L 16836408 16836465 6 117 2.0 0.0 1.0 3.0 174 chr3L 16836291 intergenic not near genes chr3L 16836378 intergenic not near genes chr3L 16836465 intergenic not near genes chr3L_6_16835001 chr3L_16835001 RAL-138 1482 chr3L 16845006 16845032 chr3L 16845144 16845170 4 138 2.5 2.5 2.5 1.1 164 chr3L 16845006 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845170 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-138 1483 chr3L 16873334 16873350 chr3L 16873464 16873480 5 129 0.5 2.0 1.2 2.3 146 chr3L 16873334 intron Lmpt + chr3L 16873407 intron Lmpt + chr3L 16873480 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-138 1484 chr3L 16885353 16885403 chr3L 16885513 16885563 7 160 2.0 2.0 2.0 2.3 210 chr3L 16885353 intron Lmpt + chr3L 16885458 intron Lmpt + chr3L 16885563 intron Lmpt + chr3L_7_16885001 chr3L_16885001 RAL-138 1485 chr3L 16887614 16887657 chr3L 16887716 16887759 8 99 2.5 2.5 2.5 2.3 145 chr3L 16887614 intron Lmpt + chr3L 16887686 intron Lmpt + chr3L 16887759 intron Lmpt + chr3L_8_16885001 chr3L_16885001 RAL-138 1486 chr3L 16894948 16894997 chr3L 16895058 16895083 19 106 4.0 8.5 6.2 2.6 135 chr3L 16894948 intron Lmpt + chr3L 16895016 intron Lmpt + chr3L 16895083 intron Lmpt + chr3L_19_16895001 chr3L_16895001 RAL-138 1487 chr3L 16945709 16945723 chr3L 16954887 16954898 roo 5 9175 10.0 4.5 7.2 0.6 9189 chr3L 16945709 exon Obp73a + chr3L 16950304 intergenic not near genes chr3L 16954898 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-138 1488 chr3L 16945725 16945758 chr3L 16954882 16954899 roo 13 9154 6.5 4.0 5.2 2.1 9174 chr3L 16945725 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954899 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-138 1489 chr3L 17027146 17027187 chr3L 17027263 17027274 12 114 2.5 5.5 4.0 2.4 128 chr3L 17027146 intergenic Fit2 +,CG7730 + chr3L 17027210 intergenic Fit2 +,CG7730 + chr3L 17027274 intergenic Fit2 +,CG7730 + chr3L_12_17025001 chr3L_17025001 RAL-138 1490 chr3L 17034910 17034954 chr3L 17035123 17035167 G2 9 213 3.5 3.0 3.2 2.1 257 chr3L 17034910 intergenic not near genes chr3L 17035038 intergenic not near genes chr3L 17035167 intergenic beg + chr3L_9_17035001 chr3L_17035001 RAL-138 1491 chr3L 17048468 17048492 chr3L 17048595 17048607 6 125 3.0 1.5 2.2 1.9 139 chr3L 17048468 intergenic TpnC73F + chr3L 17048538 intergenic TpnC73F + chr3L 17048607 intergenic TpnC73F + chr3L_6_17045001 chr3L_17045001 RAL-138 1492 chr3L 17084988 17085030 chr3L 17094162 17094204 roo 15 9174 11.0 9.5 10.2 1.3 9216 chr3L 17084988 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094204 intron Rbp6 - chr3L_15_17085001 chr3L_17085001 RAL-138 1493 chr3L 17113849 17113859 chr3L 17113959 17113969 5 110 8.0 3.5 5.8 0.7 120 chr3L 17113849 intron Rbp6 - chr3L 17113909 intron Rbp6 - chr3L 17113969 intron Rbp6 - chr3L_5_17110001 chr3L_17110001 RAL-138 1494 chr3L 17113862 17113897 chr3L 17113953 17114007 11 103 2.5 3.0 2.8 2.9 145 chr3L 17113862 intron Rbp6 - chr3L 17113934 intron Rbp6 - chr3L 17114007 intron Rbp6 - chr3L_11_17110001 chr3L_17110001 RAL-138 1495 chr3L 17164356 17164367 chr3L 17164522 17164533 4 166 4.0 0.0 2.0 1.3 177 chr3L 17164356 intron Rbp6 - chr3L 17164444 intron Rbp6 - chr3L 17164533 intron Rbp6 - chr3L_4_17160001 chr3L_17160001 RAL-138 1496 chr3L 17194212 17194259 chr3L 17194504 17194551 13 291 2.5 2.5 2.5 3.7 339 chr3L 17194212 intron Rbp6 - chr3L 17194382 intron Rbp6 - chr3L 17194551 intron Rbp6 - chr3L_13_17190001 chr3L_17190001 RAL-138 1497 chr3L 17272225 17272262 chr3L 17272383 17272420 9 156 3.5 3.0 3.2 2.1 195 chr3L 17272225 intergenic not near genes chr3L 17272322 intergenic not near genes chr3L 17272420 intergenic not near genes chr3L_9_17270001 chr3L_17270001 RAL-138 1498 chr3L 17321713 17321717 chr3L 17321808 17321827 4 106 6.5 5.0 5.8 0.6 114 chr3L 17321713 intergenic not near genes chr3L 17321770 intergenic not near genes chr3L 17321827 intergenic not near genes chr3L_4_17320001 chr3L_17320001 RAL-138 1499 chr3L 17321722 17321741 chr3L 17321803 17321851 13 103 4.0 4.5 4.2 2.5 129 chr3L 17321722 intergenic not near genes chr3L 17321786 intergenic not near genes chr3L 17321851 intergenic not near genes chr3L_13_17320001 chr3L_17320001 RAL-138 1500 chr3L 17332496 17332547 chr3L 17332686 17332693 11 176 5.5 0.0 2.8 2.9 197 chr3L 17332496 intergenic not near genes chr3L 17332594 intergenic not near genes chr3L 17332693 intergenic not near genes chr3L_11_17330001 chr3L_17330001 RAL-138 1501 chr3L 17344608 17344628 chr3L 17344716 17344736 19 108 17.5 10.0 13.8 1.3 128 chr3L 17344608 exon brv2 - chr3L 17344672 5` UTR brv2 - chr3L 17344736 intergenic brv2 -,Mip - chr3L_19_17340001 chr3L_17340001 RAL-138 1502 chr3L 17344629 17344656 chr3L 17344715 17344764 13 106 8.0 9.5 8.8 1.3 135 chr3L 17344629 exon brv2 - chr3L 17344696 5` UTR brv2 - chr3L 17344764 intergenic brv2 -,Mip - chr3L_13_17340001 chr3L_17340001 RAL-138 1503 chr3L 17367421 17367456 chr3L 17367540 17367575 6 119 3.0 2.0 2.5 1.7 154 chr3L 17367421 intergenic CR45688 +,Cad74A - chr3L 17367498 intergenic CR45688 +,Cad74A - chr3L 17367575 intergenic Cad74A -,CR45688 + chr3L_6_17365001 chr3L_17365001 RAL-138 1504 chr3L 17408887 17408926 chr3L 17408988 17409027 20 101 11.5 5.5 8.5 2.1 140 chr3L 17408887 intron blot - chr3L 17408957 intron blot - chr3L 17409027 intron blot - chr3L_20_17405001 chr3L_17405001 RAL-138 1505 chr3L 17510712 17510724 chr3L 17510818 17510833 12 108 20.0 10.0 15.0 0.8 121 chr3L 17510712 exon Oatp74D + chr3L 17510772 exon Oatp74D + chr3L 17510833 intron Oatp74D + chr3L_12_17510001 chr3L_17510001 RAL-138 1506 chr3L 17510725 17510765 chr3L 17510816 17510873 37 106 7.5 9.0 8.2 4.0 148 chr3L 17510725 exon Oatp74D + chr3L 17510799 intron Oatp74D + chr3L 17510873 intron Oatp74D + chr3L_37_17510001 chr3L_17510001 RAL-138 1507 chr3L 17516959 17517007 chr3L 17524542 17524586 412 17 7581 10.5 11.5 11.0 1.4 7627 chr3L 17516959 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524586 3` UTR CG7564 + chr3L_17_17520001 chr3L_17520001 RAL-138 1508 chr3L 17632697 17632754 chr3L 17632835 17632892 18 138 4.0 4.5 4.2 3.5 195 chr3L 17632697 intergenic CR44567 -,CR44566 + chr3L 17632794 intergenic CR44567 - chr3L 17632892 intergenic CR44567 - chr3L_18_17630001 chr3L_17630001 RAL-138 1509 chr3L 17636080 17636130 chr3L 17636253 17636302 23 173 1.5 8.0 4.8 4.0 222 chr3L 17636080 intron CG7497 + chr3L 17636191 intron CG7497 + chr3L 17636302 intron CG7497 + chr3L_23_17635001 chr3L_17635001 RAL-138 1510 chr3L 17730829 17730878 chr3L 17738184 17738233 mdg1 6 7355 3.0 4.0 3.5 1.3 7404 chr3L 17730829 intron Ccn + chr3L 17734531 intron Ccn + chr3L 17738233 intron Ccn + chr3L_6_17730001 chr3L_17730001 RAL-138 1511 chr3L 17758029 17758058 chr3L 17758109 17758158 14 95 6.5 8.5 7.5 1.6 129 chr3L 17758029 intron,intron Adgf-A -,Msi - chr3L 17758094 intron,intron Adgf-A -,Msi - chr3L 17758158 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_14_17755001 chr3L_17755001 RAL-138 1512 chr3L 17790594 17790635 chr3L 17790884 17790925 9 289 3.0 2.5 2.8 2.4 331 chr3L 17790594 intergenic CG42815 - chr3L 17790760 intergenic CG42815 - chr3L 17790925 intergenic CG42815 - chr3L_9_17790001 chr3L_17790001 RAL-138 1513 chr3L 17799785 17799839 chr3L 17801597 17801651 S-element 26 1811 5.5 4.0 4.8 4.5 1866 chr3L 17799785 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801651 intron NUCB1 - chr3L_26_17800001 chr3L_17800001 RAL-138 1514 chr3L 17834298 17834349 chr3L 17834487 17834538 9 189 0.5 1.5 1.0 4.5 240 chr3L 17834298 intron Grd + chr3L 17834418 intron Grd + chr3L 17834538 intron Grd + chr3L_9_17830001 chr3L_17830001 RAL-138 1515 chr3L 17902281 17902330 chr3L 17902382 17902433 9 102 2.0 3.5 2.8 2.4 152 chr3L 17902281 intron Prestin - chr3L 17902357 intron Prestin - chr3L 17902433 intron Prestin - chr3L_9_17900001 chr3L_17900001 RAL-138 1516 chr3L 17991505 17991550 chr3L 17991652 17991697 7 147 1.5 0.5 1.0 3.5 192 chr3L 17991505 intron Eip75B - chr3L 17991601 intron Eip75B - chr3L 17991697 intron Eip75B - chr3L_7_17990001 chr3L_17990001 RAL-138 1517 chr3L 18020624 18020669 chr3L 18020833 18020878 6 209 1.0 2.0 1.5 2.4 254 chr3L 18020624 intron Eip75B - chr3L 18020751 intron Eip75B - chr3L 18020878 intron Eip75B - chr3L_6_18020001 chr3L_18020001 RAL-138 1518 chr3L 18029954 18029975 chr3L 18030056 18030074 5 101 2.5 0.0 1.2 2.3 120 chr3L 18029954 intron Eip75B - chr3L 18030014 intron Eip75B - chr3L 18030074 intron Eip75B - chr3L_5_18030001 chr3L_18030001 RAL-138 1519 chr3L 18047685 18047736 chr3L 18056767 18056818 roo 17 9082 7.0 4.5 5.8 2.5 9133 chr3L 18047685 intron Eip75B - chr3L 18052252 intron Eip75B - chr3L 18056818 intron Eip75B - chr3L_17_18050001 chr3L_18050001 RAL-138 1520 chr3L 18064036 18064077 chr3L 18064147 18064187 11 110 1.0 3.5 2.2 3.4 151 chr3L 18064036 intron Eip75B - chr3L 18064112 intron Eip75B - chr3L 18064187 intron Eip75B - chr3L_11_18060001 chr3L_18060001 RAL-138 1521 chr3L 18092755 18092780 chr3L 18092895 18092920 7 140 3.0 0.0 1.5 2.8 165 chr3L 18092755 intron CG13698 - chr3L 18092838 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-138 1522 chr3L 18106230 18106261 chr3L 18106374 18106405 7 144 4.5 0.0 2.2 2.2 175 chr3L 18106230 intergenic CG13698 -,mRpS26 + chr3L 18106318 intergenic CG13698 -,mRpS26 + chr3L 18106405 intergenic mRpS26 +,CG13698 - chr3L_7_18105001 chr3L_18105001 RAL-138 1523 chr3L 18107589 18107644 chr3L 18107707 18107762 24 118 5.5 6.0 5.8 3.5 173 chr3L 18107589 intergenic mRpS26 +,CG5147 - chr3L 18107676 intergenic CG5147 -,mRpS26 + chr3L 18107762 intergenic CG5147 -,mRpS26 + chr3L_24_18105001 chr3L_18105001 RAL-138 1524 chr3L 18118194 18118236 chr3L 18118297 18118339 5 103 1.5 1.5 1.5 2.0 145 chr3L 18118194 3` UTR,intron CG32195 +,CG7341 + chr3L 18118266 3` UTR,intron CG32195 +,CG7341 + chr3L 18118339 3` UTR,intron CG32195 +,CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-138 1525 chr3L 18124404 18124428 chr3L 18124513 18124537 5 109 3.0 2.0 2.5 1.4 133 chr3L 18124404 intergenic not near genes chr3L 18124470 intergenic not near genes chr3L 18124537 intergenic not near genes chr3L_5_18120001 chr3L_18120001 RAL-138 1526 chr3L 18135742 18135755 chr3L 18135847 18135860 5 103 1.0 2.5 1.8 1.8 118 chr3L 18135742 intergenic CR44669 - chr3L 18135801 3` UTR CR44669 - chr3L 18135860 3` UTR CR44669 - chr3L_5_18135001 chr3L_18135001 RAL-138 1527 chr3L 18138132 18138146 chr3L 18138240 18138254 7 108 17.0 7.0 12.0 0.5 122 chr3L 18138132 intergenic not near genes chr3L 18138193 intergenic not near genes chr3L 18138254 intergenic not near genes chr3L_7_18135001 chr3L_18135001 RAL-138 1528 chr3L 18138149 18138159 chr3L 18138238 18138265 5 103 13.5 6.5 10.0 0.5 116 chr3L 18138149 intergenic not near genes chr3L 18138207 intergenic not near genes chr3L 18138265 intergenic not near genes chr3L_5_18135001 chr3L_18135001 RAL-138 1529 chr3L 18138167 18138185 chr3L 18138250 18138293 5 94 6.5 9.0 7.8 0.6 126 chr3L 18138167 intergenic not near genes chr3L 18138230 intergenic not near genes chr3L 18138293 intergenic not near genes chr3L_5_18135001 chr3L_18135001 RAL-138 1530 chr3L 18160652 18160666 chr3L 18160759 18160773 5 105 3.0 4.5 3.8 1.0 121 chr3L 18160652 intron CG13699 - chr3L 18160712 intron CG13699 - chr3L 18160773 intron CG13699 - chr3L_5_18160001 chr3L_18160001 RAL-138 1531 chr3L 18172666 18172703 chr3L 18172766 18172804 28 101 11.0 8.0 9.5 2.7 138 chr3L 18172666 intron W - chr3L 18172735 intron W - chr3L 18172804 intron W - chr3L_28_18170001 chr3L_18170001 RAL-138 1532 chr3L 18175792 18175835 chr3L 18176056 18176099 12 264 2.5 3.5 3.0 3.0 307 chr3L 18175792 intron W - chr3L 18175946 intron W - chr3L 18176099 intron W - chr3L_12_18175001 chr3L_18175001 RAL-138 1533 chr3L 18223144 18223183 chr3L 18223252 18223302 4 114 2.5 0.0 1.2 1.8 158 chr3L 18223144 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223302 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-138 1534 chr3L 18258834 18258872 chr3L 18258985 18259023 4 150 2.5 1.5 2.0 1.3 189 chr3L 18258834 intergenic not near genes chr3L 18258928 intergenic not near genes chr3L 18259023 intergenic not near genes chr3L_4_18255001 chr3L_18255001 RAL-138 1535 chr3L 18262447 18262474 chr3L 18262555 18262582 4 108 3.5 0.5 2.0 1.3 135 chr3L 18262447 intergenic not near genes chr3L 18262514 intergenic not near genes chr3L 18262582 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-138 1536 chr3L 18277850 18277868 chr3L 18278172 18278212 5 335 4.0 3.0 3.5 1.1 362 chr3L 18277850 intergenic not near genes chr3L 18278031 intergenic not near genes chr3L 18278212 intergenic not near genes chr3L_5_18275001 chr3L_18275001 RAL-138 1537 chr3L 18283907 18283962 chr3L 18284009 18284064 11 102 1.5 1.5 1.5 4.4 157 chr3L 18283907 intergenic not near genes chr3L 18283986 intergenic not near genes chr3L 18284064 intergenic not near genes chr3L_11_18280001 chr3L_18280001 RAL-138 1538 chr3L 18445227 18445263 chr3L 18445330 18445366 5 102 0.5 0.0 0.2 4.2 139 chr3L 18445227 intergenic not near genes chr3L 18445296 intergenic not near genes chr3L 18445366 intergenic not near genes chr3L_5_18445001 chr3L_18445001 RAL-138 1539 chr3L 18528607 18528644 chr3L 18537793 18537830 roo 13 9186 5.5 2.0 3.8 2.7 9223 chr3L 18528607 intergenic not near genes chr3L 18533218 intergenic not near genes chr3L 18537830 intergenic not near genes chr3L_13_18530001 chr3L_18530001 RAL-138 1540 chr3L 18546679 18546734 chr3L 18546798 18546853 14 118 2.5 1.5 2.0 4.7 174 chr3L 18546679 intergenic not near genes chr3L 18546766 intergenic not near genes chr3L 18546853 intergenic not near genes chr3L_14_18545001 chr3L_18545001 RAL-138 1541 chr3L 18593934 18593976 chr3L 18595939 18595984 Doc 8 2004 5.5 0.0 2.8 2.1 2050 chr3L 18593934 intergenic term - chr3L 18594959 intergenic not near genes chr3L 18595984 intergenic CR45389 + chr3L_8_18590001 chr3L_18590001 RAL-138 1542 chr3L 18622135 18622182 chr3L 18622300 18622347 8 162 9.0 4.0 6.5 1.1 212 chr3L 18622135 intergenic not - chr3L 18622241 intergenic not -,bora + chr3L 18622347 intergenic not -,bora + chr3L_8_18620001 chr3L_18620001 RAL-138 1543 chr3L 18638565 18638608 chr3L 18638684 18638726 7 119 1.5 5.5 3.5 1.6 161 chr3L 18638565 intron MYPT-75D + chr3L 18638646 intron MYPT-75D + chr3L 18638726 intron MYPT-75D + chr3L_7_18635001 chr3L_18635001 RAL-138 1544 chr3L 18645270 18645302 chr3L 18645394 18645426 7 124 2.0 3.5 2.8 1.8 156 chr3L 18645270 intron MYPT-75D + chr3L 18645348 intron MYPT-75D + chr3L 18645426 intron MYPT-75D + chr3L_7_18645001 chr3L_18645001 RAL-138 1545 chr3L 18656166 18656212 chr3L 18656276 18656322 10 107 1.5 4.0 2.8 2.6 156 chr3L 18656166 intron MYPT-75D + chr3L 18656244 intron MYPT-75D + chr3L 18656322 intron MYPT-75D + chr3L_10_18655001 chr3L_18655001 RAL-138 1546 chr3L 18701131 18701152 chr3L 18701240 18701241 4 105 0.0 1.0 0.5 2.7 110 chr3L 18701131 intergenic not near genes chr3L 18701186 intergenic not near genes chr3L 18701241 intergenic not near genes chr3L_4_18700001 chr3L_18700001 RAL-138 1547 chr3L 18702835 18702847 chr3L 18702936 18702948 4 101 6.5 2.5 4.5 0.7 113 chr3L 18702835 intergenic not near genes chr3L 18702892 intergenic not near genes chr3L 18702948 intergenic not near genes chr3L_4_18700001 chr3L_18700001 RAL-138 1548 chr3L 18702858 18702889 chr3L 18702939 18702958 4 84 2.0 2.5 2.2 1.2 100 chr3L 18702858 intergenic not near genes chr3L 18702908 intergenic not near genes chr3L 18702958 intergenic not near genes chr3L_4_18700001 chr3L_18700001 RAL-138 1549 chr3L 18710735 18710775 chr3L 18718712 18718751 Stalker2 6 7976 2.0 2.0 2.0 2.0 8016 chr3L 18710735 intergenic not near genes chr3L 18714743 intergenic not near genes chr3L 18718751 intergenic not near genes chr3L_6_18710001 chr3L_18710001 RAL-138 1550 chr3L 18753522 18753558 chr3L 18753629 18753665 9 107 6.0 3.5 4.8 1.6 143 chr3L 18753522 intron ftz-f1 - chr3L 18753594 intron ftz-f1 - chr3L 18753665 intron ftz-f1 - chr3L_9_18750001 chr3L_18750001 RAL-138 1551 chr3L 18770634 18770659 chr3L 18770744 18770767 9 110 8.0 4.5 6.2 1.2 133 chr3L 18770634 intron ftz-f1 - chr3L 18770700 intron ftz-f1 - chr3L 18770767 intron ftz-f1 - chr3L_9_18770001 chr3L_18770001 RAL-138 1552 chr3L 18770664 18770678 chr3L 18770736 18770788 8 105 6.5 3.0 4.8 1.4 124 chr3L 18770664 intron ftz-f1 - chr3L 18770726 intron ftz-f1 - chr3L 18770788 intron ftz-f1 - chr3L_8_18770001 chr3L_18770001 RAL-138 1553 chr3L 18772386 18772438 chr3L 18781092 18781120 roo 30 8705 8.0 8.0 8.0 3.3 8734 chr3L 18772386 intron ftz-f1 - chr3L 18776753 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_30_18775001 chr3L_18775001 RAL-138 1554 chr3L 18792550 18792605 chr3L 18792657 18792712 15 107 0.5 4.5 2.5 4.3 162 chr3L 18792550 intron ftz-f1 - chr3L 18792631 intron ftz-f1 - chr3L 18792712 intron ftz-f1 - chr3L_15_18790001 chr3L_18790001 RAL-138 1555 chr3L 18832597 18832641 chr3L 18832700 18832744 10 100 4.0 8.5 6.2 1.4 147 chr3L 18832597 intron Indy - chr3L 18832670 intron Indy - chr3L 18832744 intron Indy - chr3L_10_18830001 chr3L_18830001 RAL-138 1556 chr3L 18833782 18833808 chr3L 18834969 18834997 1360 5 1188 1.5 0.5 1.0 2.5 1215 chr3L 18833782 intron Indy - chr3L 18834390 intron Indy - chr3L 18834997 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-138 1557 chr3L 18862731 18862750 chr3L 18863221 18863238 6 490 2.0 5.0 3.5 1.3 507 chr3L 18862731 intergenic not near genes chr3L 18862984 intergenic not near genes chr3L 18863238 intergenic CG6865 + chr3L_6_18860001 chr3L_18860001 RAL-138 1558 chr3L 18896766 18896784 chr3L 18896900 18896943 6 151 2.0 1.5 1.8 2.1 177 chr3L 18896766 intron CG3902 - chr3L 18896854 intron CG3902 - chr3L 18896943 intron CG3902 - chr3L_6_18895001 chr3L_18895001 RAL-138 1559 chr3L 18929961 18929990 chr3L 18930041 18930099 5 101 2.0 1.0 1.5 2.0 138 chr3L 18929961 intron CG32204 - chr3L 18930030 intron CG32204 - chr3L 18930099 exon CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-138 1560 chr3L 18933608 18933659 chr3L 18933727 18933777 7 118 1.5 1.5 1.5 2.8 169 chr3L 18933608 intron CG32204 - chr3L 18933692 intron CG32204 - chr3L 18933777 intron CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-138 1561 chr3L 18957270 18957295 chr3L 18957376 18957400 4 106 3.5 1.0 2.2 1.2 130 chr3L 18957270 intergenic not near genes chr3L 18957335 intergenic not near genes chr3L 18957400 intergenic not near genes chr3L_4_18955001 chr3L_18955001 RAL-138 1562 chr3L 18969535 18969565 chr3L 18969630 18969666 4 100 4.5 0.0 2.2 1.2 131 chr3L 18969535 intergenic not near genes chr3L 18969600 intergenic not near genes chr3L 18969666 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-138 1563 chr3L 19008828 19008869 chr3L 19009191 19009232 jockey 28 363 7.0 17.5 12.2 2.1 404 chr3L 19008828 intron nkd - chr3L 19009030 intron nkd - chr3L 19009232 intron nkd - chr3L_28_19005001 chr3L_19005001 RAL-138 1564 chr3L 19065863 19065908 chr3L 19065969 19066014 13 106 4.5 2.0 3.2 3.1 151 chr3L 19065863 3` UTR CG6812 + chr3L 19065938 3` UTR CG6812 + chr3L 19066014 3` UTR CG6812 + chr3L_13_19065001 chr3L_19065001 RAL-138 1565 chr3L 19082025 19082066 chr3L 19082137 19082193 9 125 3.5 3.0 3.2 2.1 168 chr3L 19082025 intron Mkp3 - chr3L 19082109 intron Mkp3 - chr3L 19082193 intron Mkp3 - chr3L_9_19080001 chr3L_19080001 RAL-138 1566 chr3L 19115629 19115672 chr3L 19115833 19115859 BS 6 199 3.0 1.0 2.0 2.0 230 chr3L 19115629 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115859 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-138 1567 chr3L 19117021 19117039 chr3L 19124492 19124511 mdg1 6 7471 7.0 4.5 5.8 0.9 7490 chr3L 19117021 intron CG14082 - chr3L 19120766 intron CG14082 - chr3L 19124511 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-138 1568 chr3L 19117047 19117066 chr3L 19124519 19124529 mdg1 5 7469 4.5 7.0 5.8 0.7 7482 chr3L 19117047 intron CG14082 - chr3L 19120788 intron CG14082 - chr3L 19124529 intron CG14082 - chr3L_5_19120001 chr3L_19120001 RAL-138 1569 chr3L 19208053 19208091 chr3L 19209448 19209470 Doc 4 1392 2.5 2.0 2.2 1.2 1417 chr3L 19208053 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209470 intron fz2 - chr3L_4_19205001 chr3L_19205001 RAL-138 1570 chr3L 19220633 19220633 chr3L 22908066 22908067 6 3687433 27.5 23.0 25.2 0.2 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-138 1571 chr3L 19220635 19220635 chr3L 22908066 22908067 5 3687431 27.5 23.0 25.2 0.2 3687432 chr3L 19220635 intron fz2 - chr3L 21064351 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-138 1572 chr3L 9307796 9307796 chr3L 19220637 19220637 5 9912841 12.0 25.5 18.8 0.3 9912841 chr3L 9307796 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_5_14260001 chr3L_14260001 RAL-138 1573 chr3L 19220637 19220637 chr3L 22908066 22908066 5 3687429 28.0 23.0 25.5 0.2 3687429 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908066 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-138 1574 chr3L 19253790 19253840 chr3L 19253892 19253942 14 102 4.0 3.0 3.5 3.1 152 chr3L 19253790 3` UTR mRpL21 - chr3L 19253866 3` UTR mRpL21 - chr3L 19253942 3` UTR mRpL21 - chr3L_14_19250001 chr3L_19250001 RAL-138 1575 chr3L 19269819 19269844 chr3L 19270022 19270038 6 209 3.0 3.5 3.2 1.4 219 chr3L 19269819 intron,exon CG14085 +,CG14088 - chr3L 19269928 intron,exon CG14085 +,CG14088 - chr3L 19270038 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-138 1576 chr3L 8059906 8059917 chr3L 19307523 19307548 4 11247620 7.5 16.5 12.0 0.3 11247642 chr3L 8059906 intergenic not near genes chr3L 13683727 intron bru-3 - chr3L 19307548 intron pip - chr3L_4_13680001 chr3L_13680001 RAL-138 1577 chr3L 19315719 19315765 chr3L 19315821 19315867 6 102 2.0 1.0 1.5 2.4 148 chr3L 19315719 intron pip - chr3L 19315793 intron pip - chr3L 19315867 intron pip - chr3L_6_19315001 chr3L_19315001 RAL-138 1578 chr3L 19335719 19335770 chr3L 19335831 19335882 7 111 2.5 2.5 2.5 2.0 163 chr3L 19335719 intron pip - chr3L 19335800 intron pip - chr3L 19335882 intron pip - chr3L_7_19335001 chr3L_19335001 RAL-138 1579 chr3L 19342742 19342777 chr3L 19342858 19342893 20 116 5.0 4.5 4.8 3.4 151 chr3L 19342742 3` UTR CG32206 - chr3L 19342818 3` UTR CG32206 - chr3L 19342893 3` UTR CG32206 - chr3L_20_19340001 chr3L_19340001 RAL-138 1580 chr3L 19359798 19359827 chr3L 19359916 19359945 6 118 2.0 3.0 2.5 1.7 147 chr3L 19359798 intron CG32206 - chr3L 19359872 intron CG32206 - chr3L 19359945 intron CG32206 - chr3L_6_19355001 chr3L_19355001 RAL-138 1581 chr3L 19417798 19417834 chr3L 19417878 19417939 11 98 5.5 6.0 5.8 1.6 141 chr3L 19417798 intergenic not near genes chr3L 19417868 intergenic not near genes chr3L 19417939 intergenic not near genes chr3L_11_19415001 chr3L_19415001 RAL-138 1582 chr3L 19426745 19426782 chr3L 19426825 19426862 10 88 5.5 7.5 6.5 1.3 117 chr3L 19426745 intergenic not near genes chr3L 19426804 intergenic not near genes chr3L 19426862 intergenic not near genes chr3L_10_19425001 chr3L_19425001 RAL-138 1583 chr3L 19544212 19544259 chr3L 19544313 19544360 5 101 3.0 2.5 2.8 1.3 148 chr3L 19544212 intergenic CG9279 -,l(3)76BDr - chr3L 19544286 intergenic l(3)76BDr -,CG9279 - chr3L 19544360 3` UTR l(3)76BDr - chr3L_5_19540001 chr3L_19540001 RAL-138 1584 chr3L 19554825 19554853 chr3L 19554944 19554972 7 119 2.5 8.5 5.5 1.1 147 chr3L 19554825 intergenic CG9300 + chr3L 19554898 intergenic CG9300 + chr3L 19554972 intergenic CG9300 + chr3L_7_19550001 chr3L_19550001 RAL-138 1585 chr3L 19792342 19792361 chr3L 19792462 19792481 4 120 7.5 5.0 6.2 0.6 139 chr3L 19792342 intron,intron CG42637 -,Gyc76C - chr3L 19792412 intron,intron CG42637 -,Gyc76C - chr3L 19792481 intron,intron CG42637 -,Gyc76C - chr3L_4_19790001 chr3L_19790001 RAL-138 1586 chr3L 19820276 19820308 chr3L 19827850 19827882 412 18 7574 8.5 8.0 8.2 2.0 7606 chr3L 19820276 intron Deaf1 + chr3L 19824079 intron Deaf1 + chr3L 19827882 intron Deaf1 + chr3L_18_19820001 chr3L_19820001 RAL-138 1587 chr3L 19845707 19845765 chr3L 19845819 19845871 32 110 9.0 6.0 7.5 3.8 164 chr3L 19845707 intron Papss + chr3L 19845789 intron Papss + chr3L 19845871 intron Papss + chr3L_32_19845001 chr3L_19845001 RAL-138 1588 chr3L 19848485 19848529 chr3L 19857698 19857744 roo 17 9213 11.0 8.5 9.8 1.6 9259 chr3L 19848485 intron Papss + chr3L 19853114 intron Papss + chr3L 19857744 intron Papss + chr3L_17_19850001 chr3L_19850001 RAL-138 1589 chr3L 19981181 19981235 chr3L 19981286 19981340 7 105 5.0 0.5 2.8 1.8 159 chr3L 19981181 intergenic not near genes chr3L 19981260 intergenic CG17732 + chr3L 19981340 intergenic CG17732 + chr3L_7_19980001 chr3L_19980001 RAL-138 1590 chr3L 20096239 20096271 chr3L 20096370 20096404 7 132 2.5 4.5 3.5 1.6 165 chr3L 20096239 intergenic not near genes chr3L 20096322 intergenic not near genes chr3L 20096404 intergenic not near genes chr3L_7_20095001 chr3L_20095001 RAL-138 1591 chr3L 20113640 20113687 chr3L 20122922 20122969 roo 17 9282 5.0 6.0 5.5 2.6 9329 chr3L 20113640 intergenic not near genes chr3L 20118304 intergenic not near genes chr3L 20122969 intergenic not near genes chr3L_17_20115001 chr3L_20115001 RAL-138 1592 chr3L 20143070 20143112 chr3L 20143175 20143217 10 105 2.5 4.5 3.5 2.2 147 chr3L 20143070 intergenic not near genes chr3L 20143144 intergenic not near genes chr3L 20143217 intergenic not near genes chr3L_10_20140001 chr3L_20140001 RAL-138 1593 chr3L 20150705 20150755 chr3L 20150861 20150911 24 156 4.5 7.0 5.8 3.5 206 chr3L 20150705 3` UTR CG42674 - chr3L 20150808 3` UTR CG42674 - chr3L 20150911 3` UTR CG42674 - chr3L_24_20150001 chr3L_20150001 RAL-138 1594 chr3L 20184546 20184598 chr3L 20184657 20184709 18 111 3.0 4.0 3.5 4.0 163 chr3L 20184546 intron CG42674 - chr3L 20184628 intron CG42674 - chr3L 20184709 intron CG42674 - chr3L_18_20180001 chr3L_20180001 RAL-138 1595 chr3L 20257309 20257356 chr3L 20258454 20258501 pogo 26 1144 11.0 10.0 10.5 2.3 1192 chr3L 20257309 intron rdgC + chr3L 20257905 intron rdgC + chr3L 20258501 intron rdgC + chr3L_26_20255001 chr3L_20255001 RAL-138 1596 chr3L 20283678 20283708 chr3L 20283783 20283816 10 108 4.5 4.5 4.5 1.8 138 chr3L 20283678 intron gogo - chr3L 20283747 intron gogo - chr3L 20283816 intron gogo - chr3L_10_20280001 chr3L_20280001 RAL-138 1597 chr3L 20386924 20386972 chr3L 20387051 20387099 9 127 1.0 3.0 2.0 3.0 175 chr3L 20386924 intron fbl + chr3L 20387012 intron fbl + chr3L 20387099 intron fbl + chr3L_9_20385001 chr3L_20385001 RAL-138 1598 chr3L 20444794 20444846 chr3L 20444941 20444994 6 148 1.0 0.0 0.5 4.0 200 chr3L 20444794 intron CG5910 + chr3L 20444894 intron CG5910 + chr3L 20444994 intron CG5910 + chr3L_6_20440001 chr3L_20440001 RAL-138 1599 chr3L 20462562 20462593 chr3L 20462668 20462699 8 106 5.0 0.0 2.5 2.3 137 chr3L 20462562 intron atk - chr3L 20462630 intron atk - chr3L 20462699 intron atk - chr3L_8_20460001 chr3L_20460001 RAL-138 1600 chr3L 20476738 20476770 chr3L 20484362 20484390 springer 9 7624 2.0 1.5 1.8 3.2 7652 chr3L 20476738 3` UTR isoQC + chr3L 20480564 intergenic not near genes chr3L 20484390 3` UTR ZnT77C - chr3L_9_20480001 chr3L_20480001 RAL-138 1601 chr3L 20487641 20487668 chr3L 20488117 20488144 INE-1 9 476 6.0 3.0 4.5 1.6 503 chr3L 20487641 intron ZnT77C - chr3L 20487892 intron ZnT77C - chr3L 20488144 exon ZnT77C - chr3L_9_20485001 chr3L_20485001 RAL-138 1602 chr3L 20548344 20548386 chr3L 20548458 20548500 10 113 1.5 2.5 2.0 3.3 156 chr3L 20548344 intergenic not near genes chr3L 20548422 intergenic not near genes chr3L 20548500 intergenic not near genes chr3L_10_20545001 chr3L_20545001 RAL-138 1603 chr3L 20590064 20590080 chr3L 20590601 20590644 412 5 548 4.5 2.5 3.5 1.1 580 chr3L 20590064 intergenic not near genes chr3L 20590354 intergenic not near genes chr3L 20590644 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-138 1604 chr3L 20710756 20710792 chr3L 20710858 20710894 7 102 3.0 11.0 7.0 0.9 138 chr3L 20710756 intergenic not near genes chr3L 20710825 intergenic not near genes chr3L 20710894 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-138 1605 chr3L 20741033 20741042 chr3L 20741146 20741155 6 113 2.5 3.5 3.0 1.5 122 chr3L 20741033 intron CG13252 + chr3L 20741094 intron CG13252 + chr3L 20741155 intron CG13252 + chr3L_6_20740001 chr3L_20740001 RAL-138 1606 chr3L 20821271 20821307 chr3L 20824764 20824801 NOF 14 3494 3.0 7.0 5.0 2.3 3530 chr3L 20821271 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824801 intron Pka-R1 + chr3L_14_20820001 chr3L_20820001 RAL-138 1607 chr3L 20830991 20831046 chr3L 20831161 20831216 19 168 7.0 4.0 5.5 2.9 225 chr3L 20830991 intron Pka-R1 + chr3L 20831104 intron Pka-R1 + chr3L 20831216 intron Pka-R1 + chr3L_19_20830001 chr3L_20830001 RAL-138 1608 chr3L 20861683 20861739 chr3L 20861791 20861847 16 107 5.5 5.0 5.2 2.6 164 chr3L 20861683 intron CG32432 - chr3L 20861765 intron CG32432 - chr3L 20861847 intron CG32432 - chr3L_16_20860001 chr3L_20860001 RAL-138 1609 chr3L 20864737 20864793 chr3L 20864848 20864904 17 110 1.0 2.0 1.5 6.8 167 chr3L 20864737 intron CG32432 - chr3L 20864820 intron CG32432 - chr3L 20864904 intron CG32432 - chr3L_17_20860001 chr3L_20860001 RAL-138 1610 chr3L 20986764 20986788 chr3L 20986841 20986881 10 94 0.0 2.0 1.0 5.0 117 chr3L 20986764 intergenic not near genes chr3L 20986822 intergenic not near genes chr3L 20986881 intergenic not near genes chr3L_10_20985001 chr3L_20985001 RAL-138 1611 chr3L 21014895 21014919 chr3L 21023398 21023400 Tirant 6 8496 12.5 4.5 8.5 0.6 8505 chr3L 21014895 intron skd - chr3L 21019148 intron skd - chr3L 21023400 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-138 1612 chr3L 21014922 21014947 chr3L 21023396 21023436 Tirant 19 8490 7.0 4.0 5.5 2.9 8514 chr3L 21014922 intron skd - chr3L 21019179 intron skd - chr3L 21023436 intron skd - chr3L_19_21015001 chr3L_21015001 RAL-138 1613 chr3L 21151840 21151894 chr3L 21156949 21157003 flea 10 5109 5.0 3.5 4.2 1.9 5163 chr3L 21151840 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21157003 intron Ac78C - chr3L_10_21150001 chr3L_21150001 RAL-138 1614 chr3L 21163210 21163272 chr3L 21163317 21163374 4 102 0.5 0.5 0.5 2.7 164 chr3L 21163210 intron Ac78C - chr3L 21163292 intron Ac78C - chr3L 21163374 intron Ac78C - chr3L_4_21160001 chr3L_21160001 RAL-138 1615 chr3L 21243743 21243765 chr3L 21251310 21251331 412 7 7571 3.0 6.5 4.8 1.2 7588 chr3L 21243743 intron Eip78C + chr3L 21247537 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_7_21245001 chr3L_21245001 RAL-138 1616 chr3L 21306131 21306170 chr3L 21315314 21315354 roo 8 9184 2.0 2.5 2.2 2.5 9223 chr3L 21306131 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315354 3` UTR Pc - chr3L_8_21310001 chr3L_21310001 RAL-138 1617 chr3L 21372707 21372741 chr3L 21379240 21379274 McClintock 5 6533 4.0 2.5 3.2 1.2 6567 chr3L 21372707 intergenic not near genes chr3L 21375990 intergenic not near genes chr3L 21379274 intergenic not near genes chr3L_5_21375001 chr3L_21375001 RAL-138 1618 chr3L 21395127 21395167 chr3L 21395240 21395280 13 110 5.0 3.0 4.0 2.6 153 chr3L 21395127 intron rgn + chr3L 21395204 intron rgn + chr3L 21395280 intron rgn + chr3L_13_21395001 chr3L_21395001 RAL-138 1619 chr3L 4341332 4341334 chr3L 21448026 21448026 8 17106693 11.0 31.0 21.0 0.4 17106694 chr3L 4341332 intron Cip4 - chr3L 12894679 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_8_12890001 chr3L_12890001 RAL-138 1620 chr3L 4341332 4341333 chr3L 21448027 21448027 5 17106695 11.0 31.0 21.0 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-138 1621 chr3L 21458320 21458333 chr3L 21458440 21458453 INE-1 5 120 6.5 0.5 3.5 1.1 133 chr3L 21458320 intergenic not near genes chr3L 21458386 intergenic not near genes chr3L 21458453 intergenic not near genes chr3L_5_21455001 chr3L_21455001 RAL-138 1622 chr3L 21498830 21498864 chr3L 21500470 21500507 1360 13 1651 13.0 4.5 8.8 1.3 1677 chr3L 21498830 5` UTR,intron CR43933 +,Glg1 - chr3L 21499668 intron Glg1 - chr3L 21500507 intron Glg1 - chr3L_13_21495001 chr3L_21495001 RAL-138 1623 chr3L 21630588 21630595 chr3L 21630719 21630726 4 131 11.5 14.0 12.8 0.3 138 chr3L 21630588 intron MED1 - chr3L 21630657 intron MED1 - chr3L 21630726 intron MED1 - chr3L_4_21630001 chr3L_21630001 RAL-138 1624 chr3L 21630600 21630641 chr3L 21630731 21630772 32 131 11.0 22.0 16.5 1.8 172 chr3L 21630600 intron MED1 - chr3L 21630686 intron MED1 - chr3L 21630772 intron MED1 - chr3L_32_21630001 chr3L_21630001 RAL-138 1625 chr3L 21656970 21657024 chr3L 21657087 21657142 16 115 7.0 6.0 6.5 2.1 172 chr3L 21656970 intron CG43980 + chr3L 21657056 intron CG43980 + chr3L 21657142 intron CG43980 + chr3L_16_21655001 chr3L_21655001 RAL-138 1626 chr3L 21749302 21749332 chr3L 21754476 21754499 Doc 15 5181 13.0 7.5 10.2 1.3 5197 chr3L 21749302 intron Syn1 - chr3L 21751900 intron Syn1 - chr3L 21754499 intron Syn1 - chr3L_15_21750001 chr3L_21750001 RAL-138 1627 chr3L 21749335 21749344 chr3L 21754472 21754507 Doc 6 5167 8.5 6.5 7.5 0.7 5172 chr3L 21749335 intron Syn1 - chr3L 21751921 intron Syn1 - chr3L 21754507 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-138 1628 chr3L 21766905 21766915 chr3L 21767211 21767221 4 306 7.5 5.0 6.2 0.6 316 chr3L 21766905 intron Syn1 - chr3L 21767063 intron Syn1 - chr3L 21767221 intron Syn1 - chr3L_4_21765001 chr3L_21765001 RAL-138 1629 chr3L 21766920 21766956 chr3L 21767206 21767262 6 298 2.5 4.0 3.2 1.4 342 chr3L 21766920 intron Syn1 - chr3L 21767091 intron Syn1 - chr3L 21767262 intron Syn1 - chr3L_6_21765001 chr3L_21765001 RAL-138 1630 chr3L 21770020 21770032 chr3L 21770132 21770144 7 112 7.0 6.5 6.8 0.9 124 chr3L 21770020 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770082 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770144 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_7_21770001 chr3L_21770001 RAL-138 1631 chr3L 21852262 21852279 chr3L 21852349 21852397 4 110 1.0 0.0 0.5 2.7 135 chr3L 21852262 intron mub + chr3L 21852330 intron mub + chr3L 21852397 intron mub + chr3L_4_21850001 chr3L_21850001 RAL-138 1632 chr3L 21905326 21905365 chr3L 21905413 21905421 12 88 2.0 5.5 3.8 2.5 95 chr3L 21905326 intron mub + chr3L 21905374 intron mub + chr3L 21905421 intron mub + chr3L_12_21905001 chr3L_21905001 RAL-138 1633 chr3L 22001308 22001367 chr3L 22001411 22001469 14 100 3.0 0.5 1.8 5.0 161 chr3L 22001308 intergenic not near genes chr3L 22001388 intergenic not near genes chr3L 22001469 intergenic not near genes chr3L_14_22000001 chr3L_22000001 RAL-138 1634 chr3L 22092792 22092807 chr3L 22092918 22092922 5 122 5.5 6.5 6.0 0.7 130 chr3L 22092792 intergenic not near genes chr3L 22092857 intergenic not near genes chr3L 22092922 intergenic not near genes chr3L_5_22090001 chr3L_22090001 RAL-138 1635 chr3L 22092811 22092826 chr3L 22092937 22092952 11 125 4.5 7.5 6.0 1.6 141 chr3L 22092811 intergenic not near genes chr3L 22092882 intergenic not near genes chr3L 22092952 intergenic not near genes chr3L_11_22090001 chr3L_22090001 RAL-138 1636 chr3L 22099657 22099702 chr3L 22105868 22105913 3S18 14 6210 6.5 5.5 6.0 2.0 6256 chr3L 22099657 intergenic not near genes chr3L 22102785 intergenic not near genes chr3L 22105913 intergenic not near genes chr3L_14_22100001 chr3L_22100001 RAL-138 1637 chr3L 22124787 22124841 chr3L 22124895 22124949 21 108 10.0 5.0 7.5 2.5 162 chr3L 22124787 intergenic not near genes chr3L 22124868 intergenic not near genes chr3L 22124949 intergenic not near genes chr3L_21_22120001 chr3L_22120001 RAL-138 1638 chr3L 22130478 22130521 chr3L 22130649 22130692 21 171 4.5 8.0 6.2 2.9 214 chr3L 22130478 intergenic not near genes chr3L 22130585 intergenic not near genes chr3L 22130692 intergenic not near genes chr3L_21_22130001 chr3L_22130001 RAL-138 1639 chr3L 22169433 22169479 chr3L 22169550 22169596 11 116 1.5 2.0 1.8 3.9 163 chr3L 22169433 intron olf413 + chr3L 22169514 intron olf413 + chr3L 22169596 intron olf413 + chr3L_11_22165001 chr3L_22165001 RAL-138 1640 chr3L 22194307 22194318 chr3L 22194409 22194420 4 102 7.0 17.0 12.0 0.3 113 chr3L 22194307 intron olf413 + chr3L 22194364 intron olf413 + chr3L 22194420 intron olf413 + chr3L_4_22190001 chr3L_22190001 RAL-138 1641 chr3L 22411364 22411367 chr3L 22411448 22411466 4 94 6.0 7.0 6.5 0.5 102 chr3L 22411364 intergenic not near genes chr3L 22411415 intergenic not near genes chr3L 22411466 intergenic not near genes chr3L_4_22410001 chr3L_22410001 RAL-138 1642 chr3L 22411370 22411394 chr3L 22411446 22411447 8 78 4.0 7.0 5.5 1.2 77 chr3L 22411370 intergenic not near genes chr3L 22411408 intergenic not near genes chr3L 22411447 intergenic not near genes chr3L_8_22410001 chr3L_22410001 RAL-138 1643 chr3L 22415725 22415760 chr3L 22415925 22415960 9 199 5.0 5.0 5.0 1.5 235 chr3L 22415725 intergenic not near genes chr3L 22415842 intergenic not near genes chr3L 22415960 intergenic not near genes chr3L_9_22415001 chr3L_22415001 RAL-138 1644 chr3L 22447174 22447229 chr3L 22447290 22447345 13 116 6.0 3.5 4.8 2.2 171 chr3L 22447174 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447345 intergenic not near genes chr3L_13_22445001 chr3L_22445001 RAL-138 1645 chr3L 22522678 22522729 chr3L 22522780 22522831 20 102 4.5 6.0 5.2 3.2 153 chr3L 22522678 intergenic not near genes chr3L 22522754 intergenic not near genes chr3L 22522831 intergenic not near genes chr3L_20_22520001 chr3L_22520001 RAL-138 1646 chr3L 22555743 22555790 chr3L 22563238 22563252 blood 15 7488 3.5 3.0 3.2 3.6 7509 chr3L 22555743 intergenic not near genes chr3L 22559498 intergenic not near genes chr3L 22563252 intergenic not near genes chr3L_15_22555001 chr3L_22555001 RAL-138 1647 chr3L 22577623 22577645 chr3L 22582418 22582439 Doc 9 4805 8.5 17.0 12.8 0.7 4816 chr3L 22577623 intergenic not near genes chr3L 22580031 intergenic not near genes chr3L 22582439 3` UTR CG14459 - chr3L_9_22580001 chr3L_22580001 RAL-138 1648 chr3L 22617163 22617210 chr3L 22624640 22624675 blood 11 7476 3.5 2.0 2.8 2.9 7512 chr3L 22617163 intron CG14459 - chr3L 22620919 intron CG14459 - chr3L 22624675 intron CG14459 - chr3L_11_22620001 chr3L_22620001 RAL-138 1649 chr3L 22732445 22732490 chr3L 22732551 22732596 23 106 10.0 5.5 7.8 2.6 151 chr3L 22732445 intron CG11367 + chr3L 22732520 intron CG11367 + chr3L 22732596 exon CG11367 + chr3L_23_22730001 chr3L_22730001 RAL-138 1650 chr3L 22761370 22761403 chr3L 22766829 22766862 Ivk 9 5459 6.0 4.5 5.2 1.5 5492 chr3L 22761370 intron SPoCk + chr3L 22764116 intron SPoCk + chr3L 22766862 intron SPoCk + chr3L_9_22760001 chr3L_22760001 RAL-138 1651 chr3L 22865970 22866004 chr3L 22867128 22867162 Doc 5 1158 4.0 4.5 4.2 1.0 1192 chr3L 22865970 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867162 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-138 1652 chr3L 476982 476997 chr3L 22908066 22908066 4 22431076 13.0 23.0 18.0 0.2 22431084 chr3L 476982 intron klar - chr3L 11692524 exon CG14135 + chr3L 22908066 intergenic not near genes chr3L_4_11690001 chr3L_11690001 RAL-138 1653 chr3L 3367715 3367716 chr3L 22908066 22908066 5 19540350 10.0 23.0 16.5 0.3 19540351 chr3L 3367715 exon kst + chr3L 13137890 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_5_13135001 chr3L_13135001 RAL-138 1654 chr3L 9307795 9307797 chr3L 22908066 22908066 28 13600271 12.5 23.0 17.8 1.5 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_28_16105001 chr3L_16105001 RAL-138 1655 chr3L 19220633 19220638 chr3L 22908066 22908066 43 3687431 28.0 23.0 25.5 1.6 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_43_21060001 chr3L_21060001 RAL-138 1656 chr3L 20525228 20525230 chr3L 22908066 22908066 7 2382837 26.5 23.0 24.8 0.3 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_7_21715001 chr3L_21715001 RAL-138 1657 chr3L 22908066 22908066 chr3L 24821492 24821495 7 1913427 21.5 7.5 14.5 0.5 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_7_23860001 chr3L_23860001 RAL-138 1658 chr3L 9102752 9102789 chr3L 22908067 22908067 7 13805300 27.0 23.0 25.0 0.3 13805315 chr3L 9102752 exon bol - chr3L 16005410 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_7_16005001 chr3L_16005001 RAL-138 1659 chr3L 9307795 9307796 chr3L 22908067 22908067 11 13600272 12.0 23.0 17.5 0.6 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_11_16105001 chr3L_16105001 RAL-138 1660 chr3L 19220633 19220638 chr3L 22908067 22908067 37 3687432 28.0 23.0 25.5 1.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_37_21060001 chr3L_21060001 RAL-138 1661 chr3L 20525228 20525230 chr3L 22908067 22908067 4 2382838 26.5 23.0 24.8 0.2 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-138 1662 chr3L 22908067 22908067 chr3L 24821491 24821496 13 1913426 21.5 8.0 14.8 0.8 1913429 chr3L 22908067 intergenic not near genes chr3L 23864782 intron CG40470 - chr3L 24821496 intergenic not near genes chr3L_13_23860001 chr3L_23860001 RAL-138 1663 chr3L 19220633 19220636 chr3L 22908068 22908068 5 3687434 27.5 23.5 25.5 0.2 3687435 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908068 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-138 1664 chr3L 22920911 22920954 chr3L 22921024 22921067 10 112 1.0 2.5 1.8 3.6 156 chr3L 22920911 intron CG12768 + chr3L 22920989 intron CG12768 + chr3L 22921067 intron CG12768 + chr3L_10_22920001 chr3L_22920001 RAL-138 1665 chr3L 22921348 22921379 chr3L 22921449 22921480 14 100 15.5 6.5 11.0 1.2 132 chr3L 22921348 intron CG12768 + chr3L 22921414 intron CG12768 + chr3L 22921480 intron CG12768 + chr3L_14_22920001 chr3L_22920001 RAL-138 1666 chr3L 22985877 22985884 chr3L 22985983 22985989 4 106 3.0 2.0 2.5 1.1 112 chr3L 22985877 intergenic not near genes chr3L 22985933 intergenic not near genes chr3L 22985989 intergenic not near genes chr3L_4_22985001 chr3L_22985001 RAL-138 1667 chr3L 22985900 22985910 chr3L 22985980 22986016 5 101 1.0 2.0 1.5 2.0 116 chr3L 22985900 intergenic not near genes chr3L 22985958 intergenic not near genes chr3L 22986016 intergenic not near genes chr3L_5_22985001 chr3L_22985001 RAL-138 1668 chr3L 23026428 23026484 chr3L 23026569 23026617 6 140 3.0 1.0 2.0 2.0 189 chr3L 23026428 intron nrm + chr3L 23026522 intron nrm + chr3L 23026617 intron nrm + chr3L_6_23025001 chr3L_23025001 RAL-138 1669 chr3L 23042248 23042258 chr3L 23049032 23049042 gypsy6 4 6783 1.5 4.0 2.8 1.1 6794 chr3L 23042248 intergenic not near genes chr3L 23045645 intergenic not near genes chr3L 23049042 intergenic not near genes chr3L_4_23045001 chr3L_23045001 RAL-138 1670 chr3L 23182821 23182851 chr3L 23182922 23182952 6 101 2.0 2.5 2.2 1.9 131 chr3L 23182821 intron CG34031 + chr3L 23182886 intron CG34031 + chr3L 23182952 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-138 1671 chr3L 23204675 23204728 chr3L 23204788 23204840 27 109 5.0 4.5 4.8 4.7 165 chr3L 23204675 intergenic not near genes chr3L 23204758 intergenic not near genes chr3L 23204840 intergenic not near genes chr3L_27_23200001 chr3L_23200001 RAL-138 1672 chr3L 23251917 23251962 chr3L 23252059 23252104 9 140 5.5 1.5 3.5 2.0 187 chr3L 23251917 intron nAChRalpha4 + chr3L 23252010 intron nAChRalpha4 + chr3L 23252104 intron nAChRalpha4 + chr3L_9_23250001 chr3L_23250001 RAL-138 1673 chr3L 23253311 23253360 chr3L 23253421 23253470 4 110 1.0 2.0 1.5 1.6 159 chr3L 23253311 intron nAChRalpha4 + chr3L 23253390 intron nAChRalpha4 + chr3L 23253470 intron nAChRalpha4 + chr3L_4_23250001 chr3L_23250001 RAL-138 1674 chr3L 23428222 23428268 chr3L 23428324 23428350 10 101 8.0 4.0 6.0 1.4 128 chr3L 23428222 intergenic not near genes chr3L 23428286 intergenic not near genes chr3L 23428350 intergenic not near genes chr3L_10_23425001 chr3L_23425001 RAL-138 1675 chr3L 23468036 23468046 chr3L 23468147 23468157 4 111 12.0 12.5 12.2 0.3 121 chr3L 23468036 intergenic not near genes chr3L 23468096 intergenic not near genes chr3L 23468157 intergenic not near genes chr3L_4_23465001 chr3L_23465001 RAL-138 1676 chr3L 23485839 23485889 chr3L 23485942 23485991 11 97 4.0 3.0 3.5 2.4 152 chr3L 23485839 intergenic not near genes chr3L 23485915 intergenic not near genes chr3L 23485991 intergenic not near genes chr3L_11_23485001 chr3L_23485001 RAL-138 1677 chr3L 23823999 23824032 chr3L 23824437 23824470 6 438 6.0 2.0 4.0 1.2 471 chr3L 23823999 intergenic not near genes chr3L 23824234 intergenic not near genes chr3L 23824470 intergenic not near genes chr3L_6_23820001 chr3L_23820001 RAL-138 1678 chr3L 23913416 23913467 chr3L 23913532 23913583 5 116 2.0 1.5 1.8 1.8 167 chr3L 23913416 intron CG40470 - chr3L 23913500 intron CG40470 - chr3L 23913583 intron CG40470 - chr3L_5_23910001 chr3L_23910001 RAL-138 1679 chr3L 24009641 24009671 chr3L 24009848 24009878 4 207 5.5 1.0 3.2 1.0 237 chr3L 24009641 intergenic CR40053 - chr3L 24009760 intergenic CR40053 - chr3L 24009878 intergenic CR40053 - chr3L_4_24005001 chr3L_24005001 RAL-138 1680 chr3L 24791897 24791911 chr3L 24796701 24796715 Doc 5 4804 4.0 5.0 4.5 0.9 4818 chr3L 24791897 intergenic not near genes chr3L 24794306 intergenic not near genes chr3L 24796715 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-138 1681 chr3L 25464007 25464050 chr3L 25464108 25464109 10 91 2.0 2.0 2.0 3.3 102 chr3L 25464007 intergenic not near genes chr3L 25464058 intergenic not near genes chr3L 25464109 intergenic not near genes chr3L_10_25460001 chr3L_25460001 RAL-138 1682 chr3L 25513555 25513596 chr3L 25513658 25513698 8 103 2.5 4.0 3.2 1.9 143 chr3L 25513555 intron CG41343 - chr3L 25513626 intron CG41343 - chr3L 25513698 intron CG41343 - chr3L_8_25510001 chr3L_25510001 RAL-138 1683 chr3L 27167947 27167978 chr3L 27168070 27168123 9 135 3.5 1.0 2.2 2.8 176 chr3L 27167947 intergenic not near genes chr3L 27168035 intergenic not near genes chr3L 27168123 intergenic not near genes chr3L_9_27165001 chr3L_27165001 RAL-138 1684 chr3L 27368858 27368878 chr3L 27369428 27369448 6 570 3.5 2.0 2.8 1.6 590 chr3L 27368858 intron Dbp80 + chr3L 27369153 intron Dbp80 + chr3L 27369448 intron Dbp80 + chr3L_6_27365001 chr3L_27365001 RAL-138 1685 chr3L 27390688 27390712 chr3L 27390777 27390809 12 96 24.0 19.0 21.5 0.5 121 chr3L 27390688 intron Dbp80 + chr3L 27390748 intron Dbp80 + chr3L 27390809 intron Dbp80 + chr3L_12_27390001 chr3L_27390001 RAL-138 1686 chr3L 27716224 27716271 chr3L 27716329 27716375 6 105 4.5 3.0 3.8 1.2 151 chr3L 27716224 intergenic not near genes chr3L 27716300 intergenic not near genes chr3L 27716375 intergenic not near genes chr3L_6_27715001 chr3L_27715001 RAL-138 1687 chr3L 27980671 27980730 chr3L 27985494 27985553 Doc 7 4823 0.5 3.5 2.0 2.3 4882 chr3L 27980671 intron CG17514 - chr3L 27983112 intron CG17514 - chr3L 27985553 intron CG17514 - chr3L_7_27980001 chr3L_27980001 RAL-138 1688 chr3R 556365 556373 chr3R 556466 556474 4 101 3.0 0.5 1.8 1.4 109 chr3R 556365 intergenic not near genes chr3R 556420 intergenic not near genes chr3R 556474 intergenic not near genes chr3R_4_555001 chr3R_555001 RAL-138 1689 chr3R 1443409 1443455 chr3R 1443510 1443560 7 103 1.5 1.5 1.5 2.8 151 chr3R 1443409 intron CG40155 + chr3R 1443484 intron CG40155 + chr3R 1443560 intron CG40155 + chr3R_7_1440001 chr3R_1440001 RAL-138 1690 chr3R 1521167 1521178 chr3R 1521248 1521289 9 99 8.5 10.5 9.5 0.9 122 chr3R 1521167 intergenic not near genes chr3R 1521228 intergenic not near genes chr3R 1521289 intergenic not near genes chr3R_9_1520001 chr3R_1520001 RAL-138 1691 chr3R 1867060 1867070 chr3R 1867169 1867174 4 108 26.5 14.5 20.5 0.2 114 chr3R 1867060 intron CG42623 + chr3R 1867117 intron CG42623 + chr3R 1867174 intron CG42623 + chr3R_4_1865001 chr3R_1865001 RAL-138 1692 chr3R 1939033 1939082 chr3R 1939151 1939197 8 118 1.0 2.0 1.5 3.2 164 chr3R 1939033 intergenic not near genes chr3R 1939115 intergenic not near genes chr3R 1939197 intergenic not near genes chr3R_8_1935001 chr3R_1935001 RAL-138 1693 chr3R 2534118 2534162 chr3R 2541712 2541738 4 7585 16.0 10.0 13.0 0.3 7620 chr3R 2534118 intergenic not near genes chr3R 2537928 intergenic not near genes chr3R 2541738 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-138 1694 chr3R 4063804 4063834 chr3R 4069104 4069104 5 5292 8.5 0.0 4.2 1.0 5300 chr3R 4063804 intergenic not near genes chr3R 4066454 intergenic not near genes chr3R 4069104 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-138 1695 chr3R 4195456 4195486 chr3R 4195789 4195819 4 333 2.5 0.5 1.5 1.6 363 chr3R 4195456 intergenic not near genes chr3R 4195638 intergenic not near genes chr3R 4195819 intergenic not near genes chr3R_4_4195001 chr3R_4195001 RAL-138 1696 chr3R 4206046 4206100 chr3R 4211646 4211700 mdg3 11 5599 6.0 2.0 4.0 2.2 5654 chr3R 4206046 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211700 intron CG14636 - chr3R_11_4205001 chr3R_4205001 RAL-138 1697 chr3R 4366734 4366785 chr3R 4375142 4375193 roo 10 8408 5.0 3.5 4.2 1.9 8459 chr3R 4366734 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375193 5` UTR CR44922 + chr3R_10_4370001 chr3R_4370001 RAL-138 1698 chr3R 4376538 4376563 chr3R 4377012 4377037 7 474 2.5 1.0 1.8 2.5 499 chr3R 4376538 5` UTR CR44922 + chr3R 4376788 5` UTR CR44922 + chr3R 4377037 5` UTR CR44922 + chr3R_7_4375001 chr3R_4375001 RAL-138 1699 chr3R 4408414 4408435 chr3R 4412743 4412763 Juan 8 4328 7.5 16.5 12.0 0.6 4349 chr3R 4408414 intron CG32944 - chr3R 4410588 intron CG32944 - chr3R 4412763 intron CG32944 - chr3R_8_4410001 chr3R_4410001 RAL-138 1700 chr3R 4501955 4501976 chr3R 4502058 4502079 5 103 1.5 1.0 1.2 2.3 124 chr3R 4501955 intron CG34357 - chr3R 4502017 intron CG34357 - chr3R 4502079 intron CG34357 - chr3R_5_4500001 chr3R_4500001 RAL-138 1701 chr3R 4609537 4609575 chr3R 4610726 4610763 1360 4 1189 1.0 3.0 2.0 1.3 1226 chr3R 4609537 intergenic not near genes chr3R 4610150 intergenic not near genes chr3R 4610763 intergenic not near genes chr3R_4_4610001 chr3R_4610001 RAL-138 1702 chr3R 4636574 4636623 chr3R 4637019 4637068 INE-1 24 445 7.0 5.5 6.2 3.3 494 chr3R 4636574 intergenic not near genes chr3R 4636821 intergenic not near genes chr3R 4637068 intergenic not near genes chr3R_24_4635001 chr3R_4635001 RAL-138 1703 chr3R 4678451 4678491 chr3R 4678827 4678867 7 375 0.0 2.0 1.0 3.5 416 chr3R 4678451 intron CG43427 + chr3R 4678659 intron CG43427 + chr3R 4678867 intron CG43427 + chr3R_7_4675001 chr3R_4675001 RAL-138 1704 chr3R 4753219 4753259 chr3R 4757546 4757571 F-element 15 4325 13.5 17.0 15.2 0.9 4352 chr3R 4753219 intron,intron atms +,CG44098 - chr3R 4755395 intron,intron atms +,CG44098 - chr3R 4757571 intron,exon atms +,CG44098 - chr3R_15_4755001 chr3R_4755001 RAL-138 1705 chr3R 4759699 4759742 chr3R 4761221 4761264 hopper2 13 1522 3.0 7.5 5.2 2.1 1565 chr3R 4759699 intron,intron atms +,CG44098 - chr3R 4760482 intron,intron atms +,CG44098 - chr3R 4761264 intron,intron atms +,CG44098 - chr3R_13_4760001 chr3R_4760001 RAL-138 1706 chr3R 4769141 4769188 chr3R 4769244 4769291 9 103 0.5 2.0 1.2 4.1 150 chr3R 4769141 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769291 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-138 1707 chr3R 4856729 4856749 chr3R 4856841 4856861 6 108 13.5 1.5 7.5 0.7 132 chr3R 4856729 intron opa + chr3R 4856795 intron opa + chr3R 4856861 intron opa + chr3R_6_4855001 chr3R_4855001 RAL-138 1708 chr3R 4856754 4856766 chr3R 4856840 4856876 7 98 10.5 1.5 6.0 1.0 122 chr3R 4856754 intron opa + chr3R 4856815 intron opa + chr3R 4856876 intron opa + chr3R_7_4855001 chr3R_4855001 RAL-138 1709 chr3R 4856768 4856774 chr3R 4856843 4856863 5 86 9.0 1.5 5.2 0.8 95 chr3R 4856768 intron opa + chr3R 4856816 intron opa + chr3R 4856863 intron opa + chr3R_5_4855001 chr3R_4855001 RAL-138 1710 chr3R 4861553 4861573 chr3R 4861650 4861665 7 96 9.5 4.5 7.0 0.9 112 chr3R 4861553 intron opa + chr3R 4861609 intron opa + chr3R 4861665 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-138 1711 chr3R 4861580 4861595 chr3R 4861647 4861670 6 80 3.0 4.5 3.8 1.2 90 chr3R 4861580 intron opa + chr3R 4861625 intron opa + chr3R 4861670 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-138 1712 chr3R 4887452 4887510 chr3R 4894854 4894874 rover 18 7392 7.5 6.0 6.8 2.3 7422 chr3R 4887452 intergenic not near genes chr3R 4891163 intergenic not near genes chr3R 4894874 intergenic not near genes chr3R_18_4890001 chr3R_4890001 RAL-138 1713 chr3R 4896268 4896323 chr3R 4896386 4896441 19 118 2.0 3.0 2.5 5.4 173 chr3R 4896268 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896441 5` UTR CR45580 + chr3R_19_4895001 chr3R_4895001 RAL-138 1714 chr3R 4948354 4948387 chr3R 4949001 4949034 6 647 8.0 7.0 7.5 0.7 680 chr3R 4948354 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948694 intergenic UbcD6 - chr3R 4949034 3` UTR UbcD6 - chr3R_6_4945001 chr3R_4945001 RAL-138 1715 chr3R 4976193 4976226 chr3R 4976520 4976564 13 329 21.0 35.0 28.0 0.4 371 chr3R 4976193 intergenic not near genes chr3R 4976378 intergenic not near genes chr3R 4976564 intergenic not near genes chr3R_13_4975001 chr3R_4975001 RAL-138 1716 chr3R 5045835 5045862 chr3R 5052962 5052989 HMS-Beagle 6 7127 3.5 1.0 2.2 1.9 7154 chr3R 5045835 intron CR43635 - chr3R 5049412 intergenic not near genes chr3R 5052989 intergenic CR45588 - chr3R_6_5045001 chr3R_5045001 RAL-138 1717 chr3R 5067969 5068012 chr3R 5073511 5073554 mdg3 9 5542 3.0 6.5 4.8 1.6 5585 chr3R 5067969 intergenic not near genes chr3R 5070762 intergenic not near genes chr3R 5073554 intergenic not near genes chr3R_9_5070001 chr3R_5070001 RAL-138 1718 chr3R 5236200 5236245 chr3R 5236353 5236398 32 152 11.5 11.0 11.2 2.6 198 chr3R 5236200 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236299 3` UTR rtp - chr3R 5236398 3` UTR rtp - chr3R_32_5235001 chr3R_5235001 RAL-138 1719 chr3R 5250854 5250915 chr3R 5250991 5251050 17 136 5.0 5.0 5.0 2.8 196 chr3R 5250854 intron CG12163 - chr3R 5250952 intron CG12163 - chr3R 5251050 intron CG12163 - chr3R_17_5250001 chr3R_5250001 RAL-138 1720 chr3R 5278065 5278119 chr3R 5278171 5278225 19 105 6.5 7.0 6.8 2.4 160 chr3R 5278065 intron mtd - chr3R 5278145 intron mtd - chr3R 5278225 intron mtd - chr3R_19_5275001 chr3R_5275001 RAL-138 1721 chr3R 5282964 5282991 chr3R 5283068 5283071 5 98 27.5 26.5 27.0 0.2 107 chr3R 5282964 intron mtd - chr3R 5283018 intron mtd - chr3R 5283071 intron mtd - chr3R_5_5280001 chr3R_5280001 RAL-138 1722 chr3R 5338380 5338423 chr3R 5343582 5343612 Rt1c 10 5200 2.5 5.0 3.8 2.1 5232 chr3R 5338380 intron mtd - chr3R 5340996 intron mtd - chr3R 5343612 intron mtd - chr3R_10_5340001 chr3R_5340001 RAL-138 1723 chr3R 5445950 5445978 chr3R 5452435 5452463 Burdock 6 6485 2.0 5.5 3.8 1.2 6513 chr3R 5445950 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452463 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-138 1724 chr3R 5502268 5502307 chr3R 5502607 5502627 15 334 2.0 16.5 9.2 1.5 359 chr3R 5502268 exon CG31547 - chr3R 5502448 5` UTR CG31547 - chr3R 5502627 5` UTR CG31547 - chr3R_15_5500001 chr3R_5500001 RAL-138 1725 chr3R 5506819 5506870 chr3R 5506976 5507027 11 157 6.0 1.0 3.5 2.4 208 chr3R 5506819 intergenic not near genes chr3R 5506923 intergenic not near genes chr3R 5507027 intergenic not near genes chr3R_11_5505001 chr3R_5505001 RAL-138 1726 chr3R 5578765 5578783 chr3R 5578867 5578885 4 102 35.0 11.0 23.0 0.2 120 chr3R 5578765 3` UTR CRMP + chr3R 5578825 3` UTR CRMP + chr3R 5578885 3` UTR CRMP + chr3R_4_5575001 chr3R_5575001 RAL-138 1727 chr3R 5578790 5578820 chr3R 5578865 5578922 17 100 21.5 11.0 16.2 1.0 132 chr3R 5578790 3` UTR CRMP + chr3R 5578856 3` UTR CRMP + chr3R 5578922 3` UTR CRMP + chr3R_17_5575001 chr3R_5575001 RAL-138 1728 chr3R 5712056 5712113 chr3R 5712169 5712226 37 112 10.5 11.5 11.0 3.1 170 chr3R 5712056 3` UTR plx + chr3R 5712141 3` UTR plx + chr3R 5712226 3` UTR plx + chr3R_37_5710001 chr3R_5710001 RAL-138 1729 chr3R 5745992 5746045 chr3R 5746255 5746311 pogo 31 266 6.5 9.0 7.8 3.5 319 chr3R 5745992 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746311 3` UTR Madm + chr3R_31_5745001 chr3R_5745001 RAL-138 1730 chr3R 5746990 5747037 chr3R 5753206 5753253 diver 20 6215 9.5 3.0 6.2 2.8 6263 chr3R 5746990 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753253 intergenic CG2091 - chr3R_20_5750001 chr3R_5750001 RAL-138 1731 chr3R 5769211 5769264 chr3R 5769330 5769386 13 119 2.5 2.5 2.5 3.7 175 chr3R 5769211 intron CG2082 - chr3R 5769298 intron CG2082 - chr3R 5769386 intron CG2082 - chr3R_13_5765001 chr3R_5765001 RAL-138 1732 chr3R 5772350 5772406 chr3R 5772533 5772588 24 183 6.5 6.5 6.5 3.2 238 chr3R 5772350 intron CG2082 - chr3R 5772469 intron CG2082 - chr3R 5772588 intron CG2082 - chr3R_24_5770001 chr3R_5770001 RAL-138 1733 chr3R 5809091 5809106 chr3R 5809357 5809372 pogo 12 266 15.0 7.0 11.0 1.0 281 chr3R 5809091 3` UTR CG11000 + chr3R 5809232 3` UTR CG11000 + chr3R 5809372 3` UTR CG11000 + chr3R_12_5805001 chr3R_5805001 RAL-138 1734 chr3R 5809115 5809144 chr3R 5809358 5809410 pogo 14 264 6.5 7.0 6.8 1.8 295 chr3R 5809115 3` UTR CG11000 + chr3R 5809262 3` UTR CG11000 + chr3R 5809410 3` UTR CG11000 + chr3R_14_5805001 chr3R_5805001 RAL-138 1735 chr3R 5822358 5822404 chr3R 5823550 5823596 1360 16 1192 7.0 8.5 7.8 1.8 1238 chr3R 5822358 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823596 3` UTR CG2023 - chr3R_16_5820001 chr3R_5820001 RAL-138 1736 chr3R 5840796 5840846 chr3R 5840910 5840953 17 109 6.0 2.5 4.2 3.3 157 chr3R 5840796 intergenic CG1213 + chr3R 5840874 intergenic CG1213 + chr3R 5840953 intergenic CG1213 + chr3R_17_5840001 chr3R_5840001 RAL-138 1737 chr3R 5893180 5893232 chr3R 5893299 5893351 25 118 6.5 4.5 5.5 3.8 171 chr3R 5893180 intron CG34113 - chr3R 5893266 intron CG34113 - chr3R 5893351 intron CG34113 - chr3R_25_5890001 chr3R_5890001 RAL-138 1738 chr3R 5927567 5927584 chr3R 5927806 5927848 pogo 6 254 1.0 4.5 2.8 1.6 281 chr3R 5927567 intron CG34113 - chr3R 5927708 intron CG34113 - chr3R 5927848 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-138 1739 chr3R 5935353 5935388 chr3R 5935453 5935489 10 100 3.0 0.5 1.8 3.6 136 chr3R 5935353 intron CG34113 - chr3R 5935421 intron CG34113 - chr3R 5935489 intron CG34113 - chr3R_10_5935001 chr3R_5935001 RAL-138 1740 chr3R 5943386 5943416 chr3R 5943490 5943520 6 101 1.0 2.0 1.5 2.4 134 chr3R 5943386 intron CG34113 - chr3R 5943453 intron CG34113 - chr3R 5943520 intron CG34113 - chr3R_6_5940001 chr3R_5940001 RAL-138 1741 chr3R 5986956 5986976 chr3R 5987120 5987141 7 164 3.0 3.5 3.2 1.7 185 chr3R 5986956 intergenic not near genes chr3R 5987048 intergenic not near genes chr3R 5987141 intergenic not near genes chr3R_7_5985001 chr3R_5985001 RAL-138 1742 chr3R 5999442 5999500 chr3R 5999550 5999606 32 105 6.5 6.5 6.5 4.3 164 chr3R 5999442 intergenic not near genes chr3R 5999524 intergenic not near genes chr3R 5999606 intergenic not near genes chr3R_32_5995001 chr3R_5995001 RAL-138 1743 chr3R 6015950 6015963 chr3R 6024454 6024467 Tirant 4 8505 9.5 4.5 7.0 0.5 8517 chr3R 6015950 intergenic not near genes chr3R 6020208 intergenic not near genes chr3R 6024467 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-138 1744 chr3R 6015964 6015992 chr3R 6024450 6024481 Tirant 10 8501 4.5 4.5 4.5 1.8 8517 chr3R 6015964 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024481 intergenic not near genes chr3R_10_6020001 chr3R_6020001 RAL-138 1745 chr3R 6062130 6062181 chr3R 6062272 6062320 10 142 1.0 2.5 1.8 3.6 190 chr3R 6062130 intergenic not near genes chr3R 6062225 intergenic not near genes chr3R 6062320 intergenic not near genes chr3R_10_6060001 chr3R_6060001 RAL-138 1746 chr3R 6110434 6110474 chr3R 6110632 6110683 11 208 4.5 4.0 4.2 2.1 249 chr3R 6110434 exon Obp83ef - chr3R 6110558 intron Obp83ef - chr3R 6110683 intron Obp83ef - chr3R_11_6110001 chr3R_6110001 RAL-138 1747 chr3R 6119118 6119154 chr3R 6119229 6119265 4 111 0.0 4.0 2.0 1.3 147 chr3R 6119118 intergenic not near genes chr3R 6119192 intergenic not near genes chr3R 6119265 intergenic not near genes chr3R_4_6115001 chr3R_6115001 RAL-138 1748 chr3R 6158486 6158538 chr3R 6167094 6167143 Tirant 19 8606 11.0 9.5 10.2 1.7 8657 chr3R 6158486 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167143 intergenic CG1077 + chr3R_19_6160001 chr3R_6160001 RAL-138 1749 chr3R 6171126 6171168 chr3R 6171513 6171555 6 387 2.0 2.5 2.2 1.9 429 chr3R 6171126 intergenic not near genes chr3R 6171340 intergenic not near genes chr3R 6171555 intergenic not near genes chr3R_6_6170001 chr3R_6170001 RAL-138 1750 chr3R 6175147 6175196 chr3R 6182444 6182493 HMS-Beagle2 6 7296 2.5 2.5 2.5 1.7 7346 chr3R 6175147 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182493 intergenic CR45194 + chr3R_6_6175001 chr3R_6175001 RAL-138 1751 chr3R 6206282 6206318 chr3R 6206498 6206515 BS 14 234 7.5 6.0 6.8 1.8 233 chr3R 6206282 exon Osi24 + chr3R 6206398 intron Osi24 + chr3R 6206515 intron Osi24 + chr3R_14_6205001 chr3R_6205001 RAL-138 1752 chr3R 6283282 6283337 chr3R 6283394 6283449 24 112 4.0 5.0 4.5 4.4 167 chr3R 6283282 intergenic not near genes chr3R 6283366 intergenic not near genes chr3R 6283449 intergenic not near genes chr3R_24_6280001 chr3R_6280001 RAL-138 1753 chr3R 6286888 6286939 chr3R 6290083 6290135 12 3201 40.0 21.5 30.8 0.4 3247 chr3R 6286888 intergenic not near genes chr3R 6288512 intron CG15594 + chr3R 6290135 intergenic CG15594 + chr3R_12_6285001 chr3R_6285001 RAL-138 1754 chr3R 6307648 6307854 chr3R 21907534 21907535 5 15599735 65.0 13.0 39.0 0.1 15599887 chr3R 6307648 exon CG31556 - chr3R 14107592 intron CG12402 - chr3R 21907535 intergenic CG6678 + chr3R_5_14105001 chr3R_14105001 RAL-138 1755 chr3R 6428783 6428825 chr3R 6428910 6428952 4 127 1.5 1.5 1.5 1.6 169 chr3R 6428783 intron gpp + chr3R 6428868 intron gpp + chr3R 6428952 intron gpp + chr3R_4_6425001 chr3R_6425001 RAL-138 1756 chr3R 6474794 6474841 chr3R 6474896 6474943 16 102 2.0 6.5 4.2 3.1 149 chr3R 6474794 intergenic not near genes chr3R 6474868 intergenic not near genes chr3R 6474943 intergenic not near genes chr3R_16_6470001 chr3R_6470001 RAL-138 1757 chr3R 6689313 6689366 chr3R 6689420 6689473 26 106 11.0 4.0 7.5 3.1 160 chr3R 6689313 intergenic Ccp84Af - chr3R 6689393 intergenic Ccp84Af - chr3R 6689473 intergenic Ccp84Af - chr3R_26_6685001 chr3R_6685001 RAL-138 1758 chr3R 6705667 6705712 chr3R 6705916 6705961 17 249 0.0 6.0 3.0 4.2 294 chr3R 6705667 intergenic not near genes chr3R 6705814 intergenic not near genes chr3R 6705961 intergenic not near genes chr3R_17_6705001 chr3R_6705001 RAL-138 1759 chr3R 6737507 6737525 chr3R 6739287 6739336 Doc 10 1808 4.5 2.0 3.2 2.4 1829 chr3R 6737507 intron pb - chr3R 6738422 intron pb - chr3R 6739336 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-138 1760 chr3R 6856358 6856386 chr3R 6856500 6856528 4 142 2.0 0.0 1.0 2.0 170 chr3R 6856358 intergenic not near genes chr3R 6856443 intergenic not near genes chr3R 6856528 intergenic not near genes chr3R_4_6855001 chr3R_6855001 RAL-138 1761 chr3R 6862201 6862249 chr3R 6862310 6862361 14 112 2.0 4.5 3.2 3.3 160 chr3R 6862201 intergenic not near genes chr3R 6862281 intergenic not near genes chr3R 6862361 intergenic not near genes chr3R_14_6860001 chr3R_6860001 RAL-138 1762 chr3R 6918050 6918090 chr3R 6918153 6918193 14 102 2.5 7.0 4.8 2.4 143 chr3R 6918050 intron Antp - chr3R 6918122 intron Antp - chr3R 6918193 intron Antp - chr3R_14_6915001 chr3R_6915001 RAL-138 1763 chr3R 6990441 6990492 chr3R 6990556 6990607 7 115 6.0 2.0 4.0 1.4 166 chr3R 6990441 intron Antp - chr3R 6990524 intron Antp - chr3R 6990607 intron Antp - chr3R_7_6990001 chr3R_6990001 RAL-138 1764 chr3R 6991156 6991185 chr3R 6991257 6991285 10 100 5.5 1.0 3.2 2.4 129 chr3R 6991156 intron Antp - chr3R 6991220 intron Antp - chr3R 6991285 intron Antp - chr3R_10_6990001 chr3R_6990001 RAL-138 1765 chr3R 7026835 7026886 chr3R 7026944 7026973 4 99 2.5 3.0 2.8 1.1 138 chr3R 7026835 intergenic not near genes chr3R 7026904 intergenic not near genes chr3R 7026973 intergenic not near genes chr3R_4_7025001 chr3R_7025001 RAL-138 1766 chr3R 7036741 7036782 chr3R 7036845 7036886 13 103 3.0 5.5 4.2 2.5 145 chr3R 7036741 intergenic not near genes chr3R 7036814 intergenic not near genes chr3R 7036886 intergenic not near genes chr3R_13_7035001 chr3R_7035001 RAL-138 1767 chr3R 7060241 7060283 chr3R 7060347 7060389 12 106 3.0 2.0 2.5 3.4 148 chr3R 7060241 3` UTR dj + chr3R 7060315 3` UTR dj + chr3R 7060389 3` UTR dj + chr3R_12_7060001 chr3R_7060001 RAL-138 1768 chr3R 7092764 7092816 chr3R 7093349 7093405 13 583 3.5 4.0 3.8 2.7 641 chr3R 7092764 3` UTR CR43685 - chr3R 7093084 intron CR43685 - chr3R 7093405 3` UTR CR43685 - chr3R_13_7090001 chr3R_7090001 RAL-138 1769 chr3R 7103264 7103278 chr3R 7103364 7103379 5 100 10.0 7.5 8.8 0.5 115 chr3R 7103264 intron Alh - chr3R 7103322 intron Alh - chr3R 7103379 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-138 1770 chr3R 7103282 7103314 chr3R 7103363 7103415 11 97 7.0 7.5 7.2 1.3 133 chr3R 7103282 intron Alh - chr3R 7103348 intron Alh - chr3R 7103415 intron Alh - chr3R_11_7100001 chr3R_7100001 RAL-138 1771 chr3R 7126478 7126534 chr3R 7126598 7126654 9 120 2.5 1.5 2.0 3.0 176 chr3R 7126478 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126654 3` UTR CG10068 - chr3R_9_7125001 chr3R_7125001 RAL-138 1772 chr3R 7173668 7173693 chr3R 7173773 7173798 4 105 1.5 2.5 2.0 1.3 130 chr3R 7173668 intron sas + chr3R 7173733 intron sas + chr3R 7173798 intron sas + chr3R_4_7170001 chr3R_7170001 RAL-138 1773 chr3R 7270911 7270970 chr3R 7271020 7271079 30 109 4.5 8.5 6.5 4.0 168 chr3R 7270911 intergenic Syt4 + chr3R 7270995 intergenic Syt4 + chr3R 7271079 intergenic Syt4 + chr3R_30_7270001 chr3R_7270001 RAL-138 1774 chr3R 7319779 7319790 chr3R 7319880 7319896 4 104 10.5 5.5 8.0 0.4 117 chr3R 7319779 intergenic not near genes chr3R 7319838 intergenic not near genes chr3R 7319896 intergenic not near genes chr3R_4_7315001 chr3R_7315001 RAL-138 1775 chr3R 7447979 7447991 chr3R 7448081 7448094 4 103 5.0 3.0 4.0 0.8 115 chr3R 7447979 intergenic not near genes chr3R 7448036 intergenic not near genes chr3R 7448094 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-138 1776 chr3R 7548586 7548619 chr3R 7548690 7548723 11 104 7.5 9.0 8.2 1.2 137 chr3R 7548586 intron alpha-Est1 - chr3R 7548654 intron alpha-Est1 - chr3R 7548723 intron alpha-Est1 - chr3R_11_7545001 chr3R_7545001 RAL-138 1777 chr3R 7548620 7548632 chr3R 7548687 7548736 7 99 4.0 9.0 6.5 0.9 116 chr3R 7548620 intron alpha-Est1 - chr3R 7548678 intron alpha-Est1 - chr3R 7548736 intron alpha-Est1 - chr3R_7_7545001 chr3R_7545001 RAL-138 1778 chr3R 7631226 7631241 chr3R 7631338 7631353 5 112 5.0 3.5 4.2 1.0 127 chr3R 7631226 intron CG34127 - chr3R 7631290 intron CG34127 - chr3R 7631353 intron CG34127 - chr3R_5_7630001 chr3R_7630001 RAL-138 1779 chr3R 7677896 7677944 chr3R 7678033 7678062 12 131 4.5 5.0 4.8 2.1 166 chr3R 7677896 intron Nlg1 + chr3R 7677979 intron Nlg1 + chr3R 7678062 intron Nlg1 + chr3R_12_7675001 chr3R_7675001 RAL-138 1780 chr3R 7694555 7694607 chr3R 7713641 7713693 invader3 14 19086 2.0 4.5 3.2 3.3 19138 chr3R 7694555 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713693 intergenic not near genes chr3R_14_7700001 chr3R_7700001 RAL-138 1781 chr3R 7724430 7724446 chr3R 7724532 7724537 8 104 13.5 9.5 11.5 0.6 107 chr3R 7724430 3` UTR CG2616 + chr3R 7724484 3` UTR CG2616 + chr3R 7724537 3` UTR CG2616 + chr3R_8_7720001 chr3R_7720001 RAL-138 1782 chr3R 7724447 7724474 chr3R 7724531 7724555 13 97 6.0 9.5 7.8 1.5 108 chr3R 7724447 3` UTR CG2616 + chr3R 7724501 3` UTR CG2616 + chr3R 7724555 3` UTR CG2616 + chr3R_13_7720001 chr3R_7720001 RAL-138 1783 chr3R 7729449 7729489 chr3R 7737412 7737452 Stalker2 8 7963 1.0 3.5 2.2 2.5 8003 chr3R 7729449 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737452 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-138 1784 chr3R 7760230 7760250 chr3R 7760764 7760784 5 534 11.5 2.0 6.8 0.6 554 chr3R 7760230 intron Sp7 + chr3R 7760507 intron Sp7 + chr3R 7760784 5` UTR Sp7 + chr3R_5_7760001 chr3R_7760001 RAL-138 1785 chr3R 7760254 7760275 chr3R 7760788 7760808 7 534 7.5 5.5 6.5 0.9 554 chr3R 7760254 intron Sp7 + chr3R 7760531 intron Sp7 + chr3R 7760808 5` UTR Sp7 + chr3R_7_7760001 chr3R_7760001 RAL-138 1786 chr3R 7773344 7773344 chr3R 21907534 21907536 5 14134191 6.0 13.0 9.5 0.5 14134192 chr3R 7773344 intergenic not near genes chr3R 14840440 intron btsz - chr3R 21907536 intergenic CG6678 + chr3R_5_14840001 chr3R_14840001 RAL-138 1787 chr3R 7775893 7775946 chr3R 7775999 7776050 5 104 2.5 3.0 2.8 1.3 157 chr3R 7775893 intergenic not near genes chr3R 7775972 intergenic not near genes chr3R 7776050 intergenic not near genes chr3R_5_7775001 chr3R_7775001 RAL-138 1788 chr3R 7849615 7849673 chr3R 7850807 7850843 1360 18 1185 2.5 10.0 6.2 2.5 1228 chr3R 7849615 intron CG34384 + chr3R 7850229 intron CG34384 + chr3R 7850843 intron CG34384 + chr3R_18_7850001 chr3R_7850001 RAL-138 1789 chr3R 7857627 7857671 chr3R 7857731 7857779 30 107 8.0 5.5 6.8 3.8 152 chr3R 7857627 3` UTR CG17816 - chr3R 7857703 3` UTR CG17816 - chr3R 7857779 3` UTR CG17816 - chr3R_30_7855001 chr3R_7855001 RAL-138 1790 chr3R 7883125 7883149 chr3R 7883224 7883232 4 97 1.5 3.0 2.2 1.2 107 chr3R 7883125 intron CG17816 - chr3R 7883178 intron CG17816 - chr3R 7883232 intron CG17816 - chr3R_4_7880001 chr3R_7880001 RAL-138 1791 chr3R 8040666 8040673 chr3R 8040776 8040783 4 110 4.5 9.0 6.8 0.5 117 chr3R 8040666 intergenic not near genes chr3R 8040724 intergenic not near genes chr3R 8040783 intergenic CG43060 + chr3R_4_8040001 chr3R_8040001 RAL-138 1792 chr3R 8081125 8081178 chr3R 8081228 8081243 15 95 7.5 6.0 6.8 1.9 118 chr3R 8081125 intron mAChR-B + chr3R 8081184 intron mAChR-B + chr3R 8081243 intron mAChR-B + chr3R_15_8080001 chr3R_8080001 RAL-138 1793 chr3R 8090263 8090295 chr3R 8090465 8090497 7 202 0.5 3.5 2.0 2.3 234 chr3R 8090263 5` UTR CR44330 + chr3R 8090380 intergenic CR44330 + chr3R 8090497 intergenic CR44330 + chr3R_7_8090001 chr3R_8090001 RAL-138 1794 chr3R 8090541 8090566 chr3R 8094043 8094068 297 7 3502 4.0 8.0 6.0 1.0 3527 chr3R 8090541 intergenic CR44330 + chr3R 8092304 intergenic not near genes chr3R 8094068 intergenic CG7900 + chr3R_7_8090001 chr3R_8090001 RAL-138 1795 chr3R 8207531 8207582 chr3R 8208401 8208447 F-element 6 865 1.0 2.0 1.5 2.4 916 chr3R 8207531 intergenic not near genes chr3R 8207989 intergenic not near genes chr3R 8208447 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-138 1796 chr3R 8247874 8247930 chr3R 8247981 8248037 13 107 2.0 3.0 2.5 3.7 163 chr3R 8247874 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8247956 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8248037 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_13_8245001 chr3R_8245001 RAL-138 1797 chr3R 8288084 8288103 chr3R 8288611 8288650 6 539 2.0 4.0 3.0 1.5 566 chr3R 8288084 exon CG11671 + chr3R 8288367 exon CG11671 + chr3R 8288650 intergenic CG11671 + chr3R_6_8285001 chr3R_8285001 RAL-138 1798 chr3R 8304218 8304277 chr3R 8304339 8304398 19 121 5.0 4.0 4.5 3.5 180 chr3R 8304218 3` UTR Sgt1 - chr3R 8304308 3` UTR Sgt1 - chr3R 8304398 3` UTR Sgt1 - chr3R_19_8300001 chr3R_8300001 RAL-138 1799 chr3R 8339246 8339247 chr3R 21907534 21907536 25 13568289 16.0 13.0 14.5 1.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_25_15120001 chr3R_15120001 RAL-138 1800 chr3R 8402995 8403008 chr3R 8412175 8412199 roo 6 9184 8.5 4.5 6.5 0.8 9204 chr3R 8402995 intron CG45263 - chr3R 8407597 intron CG45263 - chr3R 8412199 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-138 1801 chr3R 8403013 8403039 chr3R 8412175 8412229 roo 6 9179 4.5 4.5 4.5 1.1 9216 chr3R 8403013 intron CG45263 - chr3R 8407621 intron CG45263 - chr3R 8412229 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-138 1802 chr3R 8534759 8534805 chr3R 8535040 8535087 18 281 2.5 1.5 2.0 6.0 328 chr3R 8534759 intergenic not near genes chr3R 8534923 intergenic not near genes chr3R 8535087 intergenic not near genes chr3R_18_8530001 chr3R_8530001 RAL-138 1803 chr3R 8570486 8570510 chr3R 8575130 8575134 HMS-Beagle 6 4648 0.0 5.0 2.5 1.7 4648 chr3R 8570486 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575134 intergenic not near genes chr3R_6_8570001 chr3R_8570001 RAL-138 1804 chr3R 8576144 8576182 chr3R 8576340 8576378 10 194 5.0 4.0 4.5 1.8 234 chr3R 8576144 intergenic not near genes chr3R 8576261 intergenic not near genes chr3R 8576378 intergenic not near genes chr3R_10_8575001 chr3R_8575001 RAL-138 1805 chr3R 8628004 8628031 chr3R 8628277 8628288 4 270 2.5 1.0 1.8 1.4 284 chr3R 8628004 3` UTR 5-HT2B + chr3R 8628146 3` UTR 5-HT2B + chr3R 8628288 3` UTR 5-HT2B + chr3R_4_8625001 chr3R_8625001 RAL-138 1806 chr3R 8631484 8631541 chr3R 8631613 8631666 9 127 1.0 1.5 1.2 4.1 182 chr3R 8631484 intergenic not near genes chr3R 8631575 intergenic not near genes chr3R 8631666 intergenic not near genes chr3R_9_8630001 chr3R_8630001 RAL-138 1807 chr3R 8707337 8707382 chr3R 8709798 8709848 jockey 5 2465 5.0 1.5 3.2 1.2 2511 chr3R 8707337 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709848 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-138 1808 chr3R 8798634 8798680 chr3R 8798741 8798781 6 106 1.5 2.5 2.0 2.0 147 chr3R 8798634 intron,intron Pif1A -,Pif1B - chr3R 8798708 intron,intron Pif1A -,Pif1B - chr3R 8798781 intron,intron Pif1A -,Pif1B - chr3R_6_8795001 chr3R_8795001 RAL-138 1809 chr3R 8894855 8894900 chr3R 8896036 8896081 1360 11 1181 0.5 3.5 2.0 3.7 1226 chr3R 8894855 intron pyd - chr3R 8895468 intron pyd - chr3R 8896081 intron pyd - chr3R_11_8895001 chr3R_8895001 RAL-138 1810 chr3R 9044005 9044045 chr3R 9044107 9044146 8 102 4.5 2.0 3.2 1.9 141 chr3R 9044005 intron Nmdmc - chr3R 9044076 intron Nmdmc - chr3R 9044146 intron Nmdmc - chr3R_8_9040001 chr3R_9040001 RAL-138 1811 chr3R 9056861 9056902 chr3R 9056998 9057038 14 136 4.5 6.0 5.2 2.3 177 chr3R 9056861 intron Kdm2 + chr3R 9056950 intron Kdm2 + chr3R 9057038 intron Kdm2 + chr3R_14_9055001 chr3R_9055001 RAL-138 1812 chr3R 9078318 9078335 chr3R 9078461 9078478 8 143 14.0 4.5 9.2 0.8 160 chr3R 9078318 intron pum - chr3R 9078398 intron pum - chr3R 9078478 intron pum - chr3R_8_9075001 chr3R_9075001 RAL-138 1813 chr3R 9079563 9079576 chr3R 9079675 9079688 7 112 36.0 18.5 27.2 0.2 125 chr3R 9079563 intron pum - chr3R 9079626 intron pum - chr3R 9079688 intron pum - chr3R_7_9075001 chr3R_9075001 RAL-138 1814 chr3R 9083120 9083175 chr3R 9083226 9083285 24 106 4.0 5.5 4.8 4.1 165 chr3R 9083120 intron pum - chr3R 9083202 intron pum - chr3R 9083285 intron pum - chr3R_24_9080001 chr3R_9080001 RAL-138 1815 chr3R 9108845 9108853 chr3R 9108946 9108954 5 101 2.5 1.0 1.8 1.8 109 chr3R 9108845 intron pum - chr3R 9108900 intron pum - chr3R 9108954 intron pum - chr3R_5_9105001 chr3R_9105001 RAL-138 1816 chr3R 9251414 9251440 chr3R 9251519 9251545 6 104 8.0 5.5 6.8 0.8 131 chr3R 9251414 3` UTR CG8420 + chr3R 9251480 intergenic CG8420 +,St2 + chr3R 9251545 intergenic CG8420 +,St2 + chr3R_6_9250001 chr3R_9250001 RAL-138 1817 chr3R 9278772 9278808 chr3R 9284055 9284088 Rt1a 6 5282 0.0 4.5 2.2 1.9 5316 chr3R 9278772 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284088 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-138 1818 chr3R 9284335 9284367 chr3R 9284457 9284489 4 122 3.5 2.0 2.8 1.1 154 chr3R 9284335 intergenic not near genes chr3R 9284412 intergenic not near genes chr3R 9284489 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-138 1819 chr3R 9361804 9361840 chr3R 9362070 9362106 pogo 7 265 0.5 4.0 2.2 2.2 302 chr3R 9361804 3` UTR CG45050 + chr3R 9361955 3` UTR CG45050 + chr3R 9362106 3` UTR CG45050 + chr3R_7_9360001 chr3R_9360001 RAL-138 1820 chr3R 9390533 9390564 chr3R 9390642 9390673 9 107 1.0 2.5 1.8 3.2 140 chr3R 9390533 intron FER - chr3R 9390603 intron FER - chr3R 9390673 intron FER - chr3R_9_9390001 chr3R_9390001 RAL-138 1821 chr3R 9393034 9393034 chr3R 21907535 21907536 4 12514502 10.5 13.0 11.8 0.3 12514502 chr3R 9393034 intron FER - chr3R 15650285 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15650001 chr3R_15650001 RAL-138 1822 chr3R 9393035 9393035 chr3R 21326802 21326811 4 11933772 10.5 38.0 24.2 0.2 11933776 chr3R 9393035 intron FER - chr3R 15359923 exon ldlCp - chr3R 21326811 intron CG16791 - chr3R_4_15355001 chr3R_15355001 RAL-138 1823 chr3R 9393035 9393035 chr3R 21907534 21907536 10 12514499 10.5 13.0 11.8 0.8 12514501 chr3R 9393035 intron FER - chr3R 15650286 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_10_15650001 chr3R_15650001 RAL-138 1824 chr3R 9601441 9601490 chr3R 9601584 9601633 9 143 3.5 4.5 4.0 1.8 192 chr3R 9601441 intron CG8312 + chr3R 9601537 intron CG8312 + chr3R 9601633 intron CG8312 + chr3R_9_9600001 chr3R_9600001 RAL-138 1825 chr3R 9620941 9620956 chr3R 21907535 21907536 7 12286582 18.5 13.0 15.8 0.4 12286595 chr3R 9620941 intron CG8312 + chr3R 15764238 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-138 1826 chr3R 9647485 9647517 chr3R 9647756 9647788 10 270 7.0 4.0 5.5 1.5 303 chr3R 9647485 intron Dh44 + chr3R 9647636 intron Dh44 + chr3R 9647788 intron Dh44 + chr3R_10_9645001 chr3R_9645001 RAL-138 1827 chr3R 9647519 9647532 chr3R 9647783 9647803 6 267 3.0 9.5 6.2 0.8 284 chr3R 9647519 intron Dh44 + chr3R 9647661 intron Dh44 + chr3R 9647803 intron Dh44 + chr3R_6_9645001 chr3R_9645001 RAL-138 1828 chr3R 9699958 9699969 chr3R 9700070 9700082 8 114 15.5 9.5 12.5 0.6 124 chr3R 9699958 intron Unc-115a - chr3R 9700020 intron Unc-115a - chr3R 9700082 intron Unc-115a - chr3R_8_9700001 chr3R_9700001 RAL-138 1829 chr3R 9699971 9700002 chr3R 9700085 9700116 1360 27 114 8.0 14.0 11.0 2.2 145 chr3R 9699971 intron Unc-115a - chr3R 9700044 intron Unc-115a - chr3R 9700116 intron Unc-115a - chr3R_27_9700001 chr3R_9700001 RAL-138 1830 chr3R 9702237 9702293 chr3R 9702338 9702394 11 97 5.5 5.0 5.2 1.8 157 chr3R 9702237 intron Unc-115a - chr3R 9702316 intron Unc-115a - chr3R 9702394 intron Unc-115a - chr3R_11_9700001 chr3R_9700001 RAL-138 1831 chr3R 9836850 9836899 chr3R 9836962 9837008 11 106 4.0 4.0 4.0 2.2 158 chr3R 9836850 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9837008 intron Teh1 - chr3R_11_9835001 chr3R_9835001 RAL-138 1832 chr3R 10140414 10140465 chr3R 10140530 10140581 8 116 3.0 1.5 2.2 2.5 167 chr3R 10140414 3` UTR TAF1B - chr3R 10140498 3` UTR TAF1B - chr3R 10140581 3` UTR TAF1B - chr3R_8_10140001 chr3R_10140001 RAL-138 1833 chr3R 10146679 10146711 chr3R 10146808 10146842 4 130 2.5 3.0 2.8 1.1 163 chr3R 10146679 intron Invadolysin + chr3R 10146760 intron Invadolysin + chr3R 10146842 intron Invadolysin + chr3R_4_10145001 chr3R_10145001 RAL-138 1834 chr3R 10160322 10160378 chr3R 10164351 10164407 40 4031 65.0 41.0 53.0 0.7 4085 chr3R 10160322 exon CG6254 - chr3R 10162364 intron Best1 - chr3R 10164407 intron Best1 - chr3R_40_10160001 chr3R_10160001 RAL-138 1835 chr3R 10183076 10183110 chr3R 10183178 10183212 9 102 2.0 1.5 1.8 3.2 136 chr3R 10183076 intron CG12814 - chr3R 10183144 intron CG12814 - chr3R 10183212 intron CG12814 - chr3R_9_10180001 chr3R_10180001 RAL-138 1836 chr3R 10231768 10231813 chr3R 10237370 10237415 mdg3 17 5600 6.5 6.5 6.5 2.3 5647 chr3R 10231768 intron CG42795 + chr3R 10234592 intron CG42795 + chr3R 10237415 intron CG42795 + chr3R_17_10230001 chr3R_10230001 RAL-138 1837 chr3R 10240907 10240963 chr3R 10241020 10241076 20 112 9.5 11.5 10.5 1.7 169 chr3R 10240907 exon CG42795 + chr3R 10240992 intron CG42795 + chr3R 10241076 intron CG42795 + chr3R_20_10240001 chr3R_10240001 RAL-138 1838 chr3R 10255357 10255385 chr3R 10260822 10260836 I-element 9 5463 9.0 3.0 6.0 1.3 5479 chr3R 10255357 3` UTR Sirt6 - chr3R 10258096 intron Sirt6 - chr3R 10260836 exon Sirt6 - chr3R_9_10255001 chr3R_10255001 RAL-138 1839 chr3R 10277114 10277164 chr3R 10277219 10277268 6 102 1.5 1.5 1.5 2.4 154 chr3R 10277114 intron CG43143 + chr3R 10277191 intron CG43143 + chr3R 10277268 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-138 1840 chr3R 10299065 10299120 chr3R 10299414 10299425 22 335 6.5 3.5 5.0 3.7 360 chr3R 10299065 intron CG43143 + chr3R 10299245 intron CG43143 + chr3R 10299425 intron CG43143 + chr3R_22_10295001 chr3R_10295001 RAL-138 1841 chr3R 10449928 10449967 chr3R 10450033 10450072 8 102 1.5 2.0 1.8 2.9 144 chr3R 10449928 intergenic not near genes chr3R 10450000 intergenic not near genes chr3R 10450072 intergenic not near genes chr3R_8_10450001 chr3R_10450001 RAL-138 1842 chr3R 10597575 10597584 chr3R 10597675 10597683 4 100 4.0 1.0 2.5 1.1 108 chr3R 10597575 intron hth - chr3R 10597629 intron hth - chr3R 10597683 intron hth - chr3R_4_10595001 chr3R_10595001 RAL-138 1843 chr3R 10723740 10723777 chr3R 10723857 10723894 6 117 3.5 0.0 1.8 2.1 154 chr3R 10723740 intergenic not near genes chr3R 10723817 intergenic not near genes chr3R 10723894 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-138 1844 chr3R 10727625 10727668 chr3R 10727730 10727752 7 94 1.0 3.0 2.0 2.3 127 chr3R 10727625 intergenic not near genes chr3R 10727688 intergenic not near genes chr3R 10727752 intergenic not near genes chr3R_7_10725001 chr3R_10725001 RAL-138 1845 chr3R 10732299 10732345 chr3R 10733195 10733242 13 896 6.0 3.0 4.5 2.4 943 chr3R 10732299 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733242 intergenic not near genes chr3R_13_10730001 chr3R_10730001 RAL-138 1846 chr3R 10745400 10745442 chr3R 10745512 10745554 8 110 4.5 0.0 2.2 2.5 154 chr3R 10745400 intron TkR86C - chr3R 10745477 intron TkR86C - chr3R 10745554 intron TkR86C - chr3R_8_10745001 chr3R_10745001 RAL-138 1847 chr3R 10752728 10752742 chr3R 10752831 10752851 4 108 0.5 1.0 0.8 2.2 123 chr3R 10752728 intergenic not near genes chr3R 10752790 intergenic not near genes chr3R 10752851 intergenic CG14691 - chr3R_4_10750001 chr3R_10750001 RAL-138 1848 chr3R 10886853 10886893 chr3R 10886956 10886998 13 105 4.5 2.0 3.2 3.1 145 chr3R 10886853 intron Leash + chr3R 10886926 intron Leash + chr3R 10886998 intron Leash + chr3R_13_10885001 chr3R_10885001 RAL-138 1849 chr3R 10919672 10919690 chr3R 10919770 10919793 5 101 2.0 0.0 1.0 2.5 121 chr3R 10919672 intergenic not near genes chr3R 10919732 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_5_10915001 chr3R_10915001 RAL-138 1850 chr3R 10920035 10920049 chr3R 10920136 10920152 9 103 3.0 4.5 3.8 1.9 117 chr3R 10920035 intergenic not near genes chr3R 10920094 intergenic not near genes chr3R 10920152 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-138 1851 chr3R 10927342 10927380 chr3R 10927607 10927616 7 259 1.0 5.5 3.2 1.7 274 chr3R 10927342 intergenic not near genes chr3R 10927479 intergenic not near genes chr3R 10927616 intergenic not near genes chr3R_7_10925001 chr3R_10925001 RAL-138 1852 chr3R 10957877 10957885 chr3R 10963261 10963275 Rt1c 4 5392 1.5 3.0 2.2 1.2 5398 chr3R 10957877 intergenic not near genes chr3R 10960576 intergenic not near genes chr3R 10963275 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-138 1853 chr3R 10984358 10984373 chr3R 10984492 10984507 5 133 5.0 3.5 4.2 1.0 149 chr3R 10984358 intron CG34114 + chr3R 10984432 intron CG34114 + chr3R 10984507 intron CG34114 + chr3R_5_10980001 chr3R_10980001 RAL-138 1854 chr3R 10994257 10994309 chr3R 10994360 10994413 6 104 1.0 2.5 1.8 2.1 156 chr3R 10994257 intron CG34114 + chr3R 10994335 intron CG34114 + chr3R 10994413 intron CG34114 + chr3R_6_10990001 chr3R_10990001 RAL-138 1855 chr3R 11048559 11048603 chr3R 11048659 11048704 15 104 1.5 4.5 3.0 3.8 145 chr3R 11048559 3` UTR CG34114 + chr3R 11048632 3` UTR CG34114 + chr3R 11048704 3` UTR CG34114 + chr3R_15_11045001 chr3R_11045001 RAL-138 1856 chr3R 11104967 11104988 chr3R 11105078 11105099 6 111 5.5 3.5 4.5 1.1 132 chr3R 11104967 intergenic not near genes chr3R 11105033 intergenic not near genes chr3R 11105099 intergenic not near genes chr3R_6_11105001 chr3R_11105001 RAL-138 1857 chr3R 11111536 11111585 chr3R 11111877 11111931 6 344 1.0 0.0 0.5 4.0 395 chr3R 11111536 intergenic not near genes chr3R 11111734 intergenic not near genes chr3R 11111931 intergenic not near genes chr3R_6_11110001 chr3R_11110001 RAL-138 1858 chr3R 11174569 11174615 chr3R 11175308 11175353 9 738 11.5 9.5 10.5 0.8 784 chr3R 11174569 exon Ugt86Dj - chr3R 11174961 intron Ugt86Dj - chr3R 11175353 exon Ugt86Dj - chr3R_9_11170001 chr3R_11170001 RAL-138 1859 chr3R 11242229 11242283 chr3R 11242343 11242397 16 113 3.5 5.5 4.5 2.9 168 chr3R 11242229 3` UTR CG17734 - chr3R 11242313 3` UTR CG17734 - chr3R 11242397 3` UTR CG17734 - chr3R_16_11240001 chr3R_11240001 RAL-138 1860 chr3R 11302692 11302751 chr3R 11302798 11302858 7 99 9.5 6.0 7.8 0.8 166 chr3R 11302692 intron CR31386 - chr3R 11302775 intron CR31386 - chr3R 11302858 intron CR31386 - chr3R_7_11300001 chr3R_11300001 RAL-138 1861 chr3R 11321023 11321053 chr3R 11321119 11321158 8 100 2.5 3.0 2.8 2.1 135 chr3R 11321023 intergenic not near genes chr3R 11321090 intergenic not near genes chr3R 11321158 intergenic not near genes chr3R_8_11320001 chr3R_11320001 RAL-138 1862 chr3R 11342517 11342574 chr3R 11342618 11342675 22 101 3.5 8.0 5.8 3.2 158 chr3R 11342517 intron pros + chr3R 11342596 intron pros + chr3R 11342675 intron pros + chr3R_22_11340001 chr3R_11340001 RAL-138 1863 chr3R 11379213 11379221 chr3R 11388393 11388401 roo 5 9179 18.5 9.0 13.8 0.3 9188 chr3R 11379213 intron pros + chr3R 11383807 intron pros + chr3R 11388401 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-138 1864 chr3R 11379222 11379253 chr3R 11388392 11388430 roo 16 9176 12.0 8.5 10.2 1.4 9208 chr3R 11379222 intron pros + chr3R 11383826 intron pros + chr3R 11388430 intron pros + chr3R_16_11380001 chr3R_11380001 RAL-138 1865 chr3R 11455224 11455266 chr3R 11455316 11455358 27 96 6.0 11.0 8.5 2.8 134 chr3R 11455224 intron,intron CG17230 +,PGRP-LB - chr3R 11455291 intron,intron CG17230 +,PGRP-LB - chr3R 11455358 intron,intron CG17230 +,PGRP-LB - chr3R_27_11455001 chr3R_11455001 RAL-138 1866 chr3R 11483444 11483475 chr3R 11483541 11483577 6 105 1.5 3.0 2.2 1.9 133 chr3R 11483444 intergenic not near genes chr3R 11483510 intergenic not near genes chr3R 11483577 intergenic not near genes chr3R_6_11480001 chr3R_11480001 RAL-138 1867 chr3R 11489752 11489794 chr3R 21907535 21907535 4 10417760 12.0 13.0 12.5 0.3 10417783 chr3R 11489752 intergenic not near genes chr3R 16698644 intron Ubx - chr3R 21907535 intergenic CG6678 + chr3R_4_16695001 chr3R_16695001 RAL-138 1868 chr3R 11665918 11665959 chr3R 11666093 11666124 7 174 1.5 0.5 1.0 3.5 206 chr3R 11665918 intron CG42327 + chr3R 11666021 intron CG42327 + chr3R 11666124 intron CG42327 + chr3R_7_11665001 chr3R_11665001 RAL-138 1869 chr3R 11694707 11694731 chr3R 11694825 11694849 4 118 1.0 0.0 0.5 2.7 142 chr3R 11694707 intergenic Fer3 - chr3R 11694778 intergenic Fer3 - chr3R 11694849 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-138 1870 chr3R 11757712 11757757 chr3R 11757838 11757842 10 117 4.5 3.5 4.0 2.0 130 chr3R 11757712 intron Lk6 - chr3R 11757777 intron Lk6 - chr3R 11757842 intron Lk6 - chr3R_10_11755001 chr3R_11755001 RAL-138 1871 chr3R 11834168 11834195 chr3R 11834252 11834298 5 98 2.5 0.0 1.2 2.3 130 chr3R 11834168 intron CG6959 - chr3R 11834233 intron CG6959 - chr3R 11834298 intron CG6959 - chr3R_5_11830001 chr3R_11830001 RAL-138 1872 chr3R 11841040 11841092 chr3R 11846254 11846294 BS 8 5209 5.5 3.0 4.2 1.5 5254 chr3R 11841040 intron CG6959 - chr3R 11843667 intron CG6959 - chr3R 11846294 intron CG6959 - chr3R_8_11840001 chr3R_11840001 RAL-138 1873 chr3R 11853409 11853473 chr3R 11853583 11853660 9 178 0.0 0.0 0.0 9.0 251 chr3R 11853409 intron CG6959 - chr3R 11853534 intron CG6959 - chr3R 11853660 intron CG6959 - chr3R_9_11850001 chr3R_11850001 RAL-138 1874 chr3R 11919322 11919338 chr3R 11919394 11919415 6 78 5.5 3.5 4.5 1.1 93 chr3R 11919322 intron Cad87A - chr3R 11919368 intron Cad87A - chr3R 11919415 intron Cad87A - chr3R_6_11915001 chr3R_11915001 RAL-138 1875 chr3R 11945362 11945400 chr3R 11945483 11945523 13 120 3.5 4.5 4.0 2.6 161 chr3R 11945362 intron Cad87A - chr3R 11945442 intron Cad87A - chr3R 11945523 intron Cad87A - chr3R_13_11945001 chr3R_11945001 RAL-138 1876 chr3R 11957836 11957854 chr3R 11958144 11958162 S-element 4 308 2.0 1.0 1.5 1.6 326 chr3R 11957836 intergenic not near genes chr3R 11957999 intergenic not near genes chr3R 11958162 intergenic not near genes chr3R_4_11955001 chr3R_11955001 RAL-138 1877 chr3R 12022859 12022916 chr3R 12025061 12025118 pogo 20 2201 1.5 6.0 3.8 4.2 2259 chr3R 12022859 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025118 intergenic not near genes chr3R_20_12020001 chr3R_12020001 RAL-138 1878 chr3R 12045153 12045199 chr3R 12045254 12045299 8 101 4.0 1.0 2.5 2.3 146 chr3R 12045153 intergenic not near genes chr3R 12045226 intergenic not near genes chr3R 12045299 intergenic not near genes chr3R_8_12045001 chr3R_12045001 RAL-138 1879 chr3R 12081978 12082029 chr3R 12082075 12082130 25 98 6.0 4.5 5.2 4.0 152 chr3R 12081978 intron CG14741 - chr3R 12082054 intron CG14741 - chr3R 12082130 intron CG14741 - chr3R_25_12080001 chr3R_12080001 RAL-138 1880 chr3R 12102859 12102877 chr3R 12102979 12102996 5 120 4.0 13.5 8.8 0.5 137 chr3R 12102859 intron dpr17 + chr3R 12102928 intron dpr17 + chr3R 12102996 intron dpr17 + chr3R_5_12100001 chr3R_12100001 RAL-138 1881 chr3R 12111866 12111921 chr3R 12111967 12112022 16 98 2.0 1.5 1.8 5.7 156 chr3R 12111866 intergenic dpr17 + chr3R 12111944 intergenic not near genes chr3R 12112022 intergenic not near genes chr3R_16_12110001 chr3R_12110001 RAL-138 1882 chr3R 12112312 12112355 chr3R 12112432 12112475 7 119 5.5 5.0 5.2 1.1 163 chr3R 12112312 intergenic not near genes chr3R 12112394 intergenic not near genes chr3R 12112475 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-138 1883 chr3R 12117507 12117521 chr3R 12117921 12117935 4 413 4.0 3.5 3.8 0.8 428 chr3R 12117507 intergenic not near genes chr3R 12117721 intergenic not near genes chr3R 12117935 intergenic not near genes chr3R_4_12115001 chr3R_12115001 RAL-138 1884 chr3R 12117525 12117549 chr3R 12117918 12117963 8 398 1.0 3.5 2.2 2.5 438 chr3R 12117525 intergenic not near genes chr3R 12117744 intergenic not near genes chr3R 12117963 intergenic not near genes chr3R_8_12115001 chr3R_12115001 RAL-138 1885 chr3R 12119877 12119901 chr3R 12119974 12119996 8 102 6.5 8.5 7.5 0.9 119 chr3R 12119877 intergenic not near genes chr3R 12119936 intergenic not near genes chr3R 12119996 intergenic not near genes chr3R_8_12115001 chr3R_12115001 RAL-138 1886 chr3R 12175011 12175039 chr3R 12175376 12175429 7 379 3.0 2.5 2.8 1.8 418 chr3R 12175011 intergenic not near genes chr3R 12175220 intergenic not near genes chr3R 12175429 intergenic not near genes chr3R_7_12175001 chr3R_12175001 RAL-138 1887 chr3R 12183173 12183194 chr3R 12183275 12183305 6 109 2.0 7.0 4.5 1.1 132 chr3R 12183173 intergenic not near genes chr3R 12183239 intergenic not near genes chr3R 12183305 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-138 1888 chr3R 12197294 12197332 chr3R 12197433 12197467 16 134 6.0 3.5 4.8 2.8 173 chr3R 12197294 intergenic not near genes chr3R 12197380 intergenic not near genes chr3R 12197467 intergenic CG3809 + chr3R_16_12195001 chr3R_12195001 RAL-138 1889 chr3R 12279801 12279860 chr3R 12279908 12279967 24 105 4.5 6.0 5.2 3.9 166 chr3R 12279801 intron svp + chr3R 12279884 intron svp + chr3R 12279967 intron svp + chr3R_24_12275001 chr3R_12275001 RAL-138 1890 chr3R 12297630 12297645 chr3R 12297729 12297738 6 100 14.5 19.5 17.0 0.3 108 chr3R 12297630 intron svp + chr3R 12297684 intron svp + chr3R 12297738 intron svp + chr3R_6_12295001 chr3R_12295001 RAL-138 1891 chr3R 12306509 12306555 chr3R 12306781 12306828 7 269 2.5 4.0 3.2 1.7 319 chr3R 12306509 intergenic not near genes chr3R 12306668 intergenic not near genes chr3R 12306828 intergenic not near genes chr3R_7_12305001 chr3R_12305001 RAL-138 1892 chr3R 12348826 12348865 chr3R 12348910 12348964 9 98 2.5 3.0 2.8 2.4 138 chr3R 12348826 intergenic CG10038 - chr3R 12348895 intergenic CG10038 - chr3R 12348964 intergenic CG10038 - chr3R_9_12345001 chr3R_12345001 RAL-138 1893 chr3R 12392881 12392901 chr3R 12392990 12393001 7 111 5.0 5.0 5.0 1.2 120 chr3R 12392881 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392941 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393001 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_7_12390001 chr3R_12390001 RAL-138 1894 chr3R 12732313 12732360 chr3R 12732457 12732504 5 144 1.0 3.5 2.2 1.6 191 chr3R 12732313 intergenic not near genes chr3R 12732408 intergenic not near genes chr3R 12732504 intergenic not near genes chr3R_5_12730001 chr3R_12730001 RAL-138 1895 chr3R 12787928 12787954 chr3R 12788035 12788060 5 107 1.5 3.0 2.2 1.6 132 chr3R 12787928 intergenic not near genes chr3R 12787994 intergenic not near genes chr3R 12788060 intergenic not near genes chr3R_5_12785001 chr3R_12785001 RAL-138 1896 chr3R 12819013 12819043 chr3R 12819121 12819151 4 108 2.0 2.0 2.0 1.3 138 chr3R 12819013 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819151 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-138 1897 chr3R 12872737 12872774 chr3R 12872861 12872898 6 124 1.0 1.0 1.0 3.0 161 chr3R 12872737 intergenic not near genes chr3R 12872818 intergenic not near genes chr3R 12872898 intergenic not near genes chr3R_6_12870001 chr3R_12870001 RAL-138 1898 chr3R 12876933 12876977 chr3R 12877041 12877085 6 108 2.0 3.0 2.5 1.7 152 chr3R 12876933 intergenic not near genes chr3R 12877009 intergenic not near genes chr3R 12877085 intergenic not near genes chr3R_6_12875001 chr3R_12875001 RAL-138 1899 chr3R 12880896 12880928 chr3R 12881000 12881032 4 104 1.5 1.0 1.2 1.8 136 chr3R 12880896 intergenic not near genes chr3R 12880964 intergenic not near genes chr3R 12881032 intergenic not near genes chr3R_4_12880001 chr3R_12880001 RAL-138 1900 chr3R 12960527 12960533 chr3R 12960639 12960645 4 111 20.5 5.5 13.0 0.3 118 chr3R 12960527 intron grsm - chr3R 12960586 intron grsm - chr3R 12960645 intron grsm - chr3R_4_12960001 chr3R_12960001 RAL-138 1901 chr3R 12960537 12960578 chr3R 12960634 12960689 19 105 9.5 5.0 7.2 2.3 152 chr3R 12960537 intron grsm - chr3R 12960613 intron grsm - chr3R 12960689 intron grsm - chr3R_19_12960001 chr3R_12960001 RAL-138 1902 chr3R 13059938 13059974 chr3R 13060158 13060194 12 220 4.5 3.0 3.8 2.5 256 chr3R 13059938 intron sim + chr3R 13060066 intron sim + chr3R 13060194 intron sim + chr3R_12_13060001 chr3R_13060001 RAL-138 1903 chr3R 13143015 13143050 chr3R 13148616 13148628 mdg3 5 5595 11.5 5.0 8.2 0.5 5613 chr3R 13143015 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145822 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148628 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-138 1904 chr3R 13164536 13164568 chr3R 13165625 13165674 7 1094 18.0 18.5 18.2 0.4 1138 chr3R 13164536 intergenic not near genes chr3R 13165105 intergenic not near genes chr3R 13165674 intergenic not near genes chr3R_7_13165001 chr3R_13165001 RAL-138 1905 chr3R 13163294 13163345 chr3R 13165883 13165939 15 2589 47.0 26.5 36.8 0.4 2645 chr3R 13163294 exon timeout + chr3R 13164616 intergenic not near genes chr3R 13165939 intergenic not near genes chr3R_15_13160001 chr3R_13160001 RAL-138 1906 chr3R 13173419 13173465 chr3R 13173526 13173549 5 101 3.0 0.5 1.8 1.8 130 chr3R 13173419 intergenic not near genes chr3R 13173484 intergenic not near genes chr3R 13173549 intergenic not near genes chr3R_5_13170001 chr3R_13170001 RAL-138 1907 chr3R 13195941 13195966 chr3R 13196061 13196086 4 119 4.5 3.0 3.8 0.8 145 chr3R 13195941 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196086 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-138 1908 chr3R 13248628 13248678 chr3R 13248752 13248802 18 124 8.0 4.5 6.2 2.5 174 chr3R 13248628 intron Ace - chr3R 13248715 intron Ace - chr3R 13248802 intron Ace - chr3R_18_13245001 chr3R_13245001 RAL-138 1909 chr3R 13260711 13260749 chr3R 13260867 13260905 5 156 1.5 4.5 3.0 1.2 194 chr3R 13260711 intron CG11686 + chr3R 13260808 intron CG11686 + chr3R 13260905 intron CG11686 + chr3R_5_13260001 chr3R_13260001 RAL-138 1910 chr3R 13272032 13272084 chr3R 13272142 13272194 12 110 3.0 1.5 2.2 3.8 162 chr3R 13272032 intergenic CG8449 - chr3R 13272113 intergenic CG8449 - chr3R 13272194 intergenic CG8449 - chr3R_12_13270001 chr3R_13270001 RAL-138 1911 chr3R 13274187 13274240 chr3R 13274291 13274343 20 102 3.5 5.0 4.2 3.8 156 chr3R 13274187 intergenic not near genes chr3R 13274265 intergenic not near genes chr3R 13274343 intergenic not near genes chr3R_20_13270001 chr3R_13270001 RAL-138 1912 chr3R 13305634 13305661 chr3R 13305746 13305773 6 112 2.5 1.5 2.0 2.0 139 chr3R 13305634 intron CG32473 + chr3R 13305704 intron CG32473 + chr3R 13305773 intron CG32473 + chr3R_6_13305001 chr3R_13305001 RAL-138 1913 chr3R 13306102 13306153 chr3R 13306514 13306563 12 411 1.5 3.0 2.2 3.8 461 chr3R 13306102 intron CG32473 + chr3R 13306332 intron CG32473 + chr3R 13306563 intron CG32473 + chr3R_12_13305001 chr3R_13305001 RAL-138 1914 chr3R 13323938 13323976 chr3R 13324066 13324086 13 130 5.5 4.0 4.8 2.2 148 chr3R 13323938 intergenic not near genes chr3R 13324012 intergenic not near genes chr3R 13324086 intergenic not near genes chr3R_13_13320001 chr3R_13320001 RAL-138 1915 chr3R 13326910 13326960 chr3R 13327029 13327079 15 119 3.5 3.5 3.5 3.3 169 chr3R 13326910 intergenic not near genes chr3R 13326994 intergenic not near genes chr3R 13327079 intergenic not near genes chr3R_15_13325001 chr3R_13325001 RAL-138 1916 chr3R 13356066 13356116 chr3R 13356176 13356226 14 110 4.5 1.5 3.0 3.5 160 chr3R 13356066 intergenic not near genes chr3R 13356146 intergenic not near genes chr3R 13356226 intergenic not near genes chr3R_14_13355001 chr3R_13355001 RAL-138 1917 chr3R 13435165 13435194 chr3R 13435267 13435296 10 102 0.0 2.5 1.2 4.5 131 chr3R 13435165 intergenic yrt - chr3R 13435230 intergenic yrt - chr3R 13435296 intergenic yrt - chr3R_10_13435001 chr3R_13435001 RAL-138 1918 chr3R 13439560 13439582 chr3R 13439667 13439690 5 108 5.5 2.0 3.8 1.0 130 chr3R 13439560 intergenic CR42756 - chr3R 13439625 intergenic CR42756 - chr3R 13439690 intergenic CR42756 - chr3R_5_13435001 chr3R_13435001 RAL-138 1919 chr3R 13517199 13517255 chr3R 13520041 13520097 jockey 4 2842 2.0 0.0 1.0 2.0 2898 chr3R 13517199 intergenic not near genes chr3R 13518648 intergenic not near genes chr3R 13520097 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-138 1920 chr3R 13526670 13526704 chr3R 13526774 13526808 12 104 5.0 5.5 5.2 1.9 138 chr3R 13526670 intergenic not near genes chr3R 13526739 intergenic not near genes chr3R 13526808 intergenic not near genes chr3R_12_13525001 chr3R_13525001 RAL-138 1921 chr3R 13558041 13558051 chr3R 13558274 13558283 13 231 18.0 10.0 14.0 0.9 242 chr3R 13558041 intergenic not near genes chr3R 13558162 intergenic not near genes chr3R 13558283 intergenic not near genes chr3R_13_13555001 chr3R_13555001 RAL-138 1922 chr3R 13603032 13603077 chr3R 13603147 13603193 9 116 3.5 5.5 4.5 1.6 161 chr3R 13603032 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603193 intergenic not near genes chr3R_9_13600001 chr3R_13600001 RAL-138 1923 chr3R 13609520 13609578 chr3R 13609646 13609697 9 120 0.0 3.5 1.8 3.2 177 chr3R 13609520 intergenic CG9759 - chr3R 13609608 intergenic CG9759 - chr3R 13609697 intergenic CG9759 - chr3R_9_13605001 chr3R_13605001 RAL-138 1924 chr3R 13624696 13624752 chr3R 13624910 13624966 8 209 3.0 2.5 2.8 2.1 270 chr3R 13624696 intergenic not near genes chr3R 13624831 intergenic not near genes chr3R 13624966 intergenic not near genes chr3R_8_13620001 chr3R_13620001 RAL-138 1925 chr3R 13672916 13672971 chr3R 13673018 13673074 19 101 8.0 7.0 7.5 2.2 158 chr3R 13672916 intron Task6 - chr3R 13672995 intron Task6 - chr3R 13673074 intron Task6 - chr3R_19_13670001 chr3R_13670001 RAL-138 1926 chr3R 13693028 13693028 chr3R 21907534 21907536 37 8214507 25.5 13.0 19.2 1.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_37_17800001 chr3R_17800001 RAL-138 1927 chr3R 13909897 13909908 chr3R 13910002 13910013 5 104 3.0 4.0 3.5 1.1 116 chr3R 13909897 intergenic not near genes chr3R 13909955 intergenic not near genes chr3R 13910013 intergenic not near genes chr3R_5_13905001 chr3R_13905001 RAL-138 1928 chr3R 13975352 13975404 chr3R 13975457 13975509 15 105 3.5 4.0 3.8 3.1 157 chr3R 13975352 intron rdx - chr3R 13975430 intron rdx - chr3R 13975509 intron rdx - chr3R_15_13975001 chr3R_13975001 RAL-138 1929 chr3R 14027131 14027182 chr3R 14027270 14027321 11 139 1.0 3.0 2.0 3.7 190 chr3R 14027131 intron rdx - chr3R 14027226 intron rdx - chr3R 14027321 intron rdx - chr3R_11_14025001 chr3R_14025001 RAL-138 1930 chr3R 14117421 14117464 chr3R 14117522 14117565 11 101 6.0 6.5 6.2 1.5 144 chr3R 14117421 intron Kif19A - chr3R 14117493 intron Kif19A - chr3R 14117565 intron Kif19A - chr3R_11_14115001 chr3R_14115001 RAL-138 1931 chr3R 14174933 14174988 chr3R 14175045 14175097 18 105 4.0 3.0 3.5 4.0 164 chr3R 14174933 3` UTR Dop1R1 - chr3R 14175015 3` UTR Dop1R1 - chr3R 14175097 3` UTR Dop1R1 - chr3R_18_14175001 chr3R_14175001 RAL-138 1932 chr3R 14180788 14180802 chr3R 14185578 14185592 F-element 4 4790 10.0 5.0 7.5 0.5 4804 chr3R 14180788 intron Dop1R1 - chr3R 14183190 intron Dop1R1 - chr3R 14185592 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-138 1933 chr3R 14180805 14180828 chr3R 14185595 14185618 F-element 6 4790 4.5 7.0 5.8 0.9 4813 chr3R 14180805 intron Dop1R1 - chr3R 14183212 intron Dop1R1 - chr3R 14185618 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 RAL-138 1934 chr3R 14217400 14217455 chr3R 14217500 14217556 19 98 2.0 5.5 3.8 4.0 156 chr3R 14217400 intron CG9649 - chr3R 14217478 intron CG9649 - chr3R 14217556 exon CG9649 - chr3R_19_14215001 chr3R_14215001 RAL-138 1935 chr3R 14246396 14246417 chr3R 14247892 14247938 jockey 7 1507 2.5 5.0 3.8 1.5 1542 chr3R 14246396 intergenic not near genes chr3R 14247167 intergenic not near genes chr3R 14247938 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-138 1936 chr3R 14249996 14250033 chr3R 14250099 14250154 10 113 0.0 1.0 0.5 6.7 158 chr3R 14249996 intergenic not near genes chr3R 14250075 intergenic not near genes chr3R 14250154 intergenic not near genes chr3R_10_14250001 chr3R_14250001 RAL-138 1937 chr3R 14293668 14293724 chr3R 14293790 14293846 4 122 3.5 3.0 3.2 1.0 178 chr3R 14293668 intron CG12207 + chr3R 14293757 intron CG12207 + chr3R 14293846 intron CG12207 + chr3R_4_14290001 chr3R_14290001 RAL-138 1938 chr3R 14408512 14408529 chr3R 14408625 14408643 10 113 5.5 6.5 6.0 1.4 131 chr3R 14408512 intron cv-c - chr3R 14408578 intron cv-c - chr3R 14408643 intron cv-c - chr3R_10_14405001 chr3R_14405001 RAL-138 1939 chr3R 14458713 14458756 chr3R 14458815 14458857 15 102 4.5 4.0 4.2 2.9 144 chr3R 14458713 intron cv-c - chr3R 14458785 intron cv-c - chr3R 14458857 intron cv-c - chr3R_15_14455001 chr3R_14455001 RAL-138 1940 chr3R 14526323 14526343 chr3R 14526528 14526548 8 205 5.5 6.5 6.0 1.1 225 chr3R 14526323 intron Pde6 - chr3R 14526436 intron Pde6 - chr3R 14526548 intron Pde6 - chr3R_8_14525001 chr3R_14525001 RAL-138 1941 chr3R 14526344 14526363 chr3R 14526549 14526568 8 205 2.5 9.5 6.0 1.1 224 chr3R 14526344 intron Pde6 - chr3R 14526456 intron Pde6 - chr3R 14526568 intron Pde6 - chr3R_8_14525001 chr3R_14525001 RAL-138 1942 chr3R 14549010 14549033 chr3R 14549122 14549144 10 111 15.0 6.0 10.5 0.9 134 chr3R 14549010 intron Pde6 - chr3R 14549077 intron Pde6 - chr3R 14549144 intron Pde6 - chr3R_10_14545001 chr3R_14545001 RAL-138 1943 chr3R 14565677 14565729 chr3R 14565801 14565857 35 126 9.5 19.5 14.5 2.3 180 chr3R 14565677 intergenic CG14852 + chr3R 14565767 intergenic CG14852 + chr3R 14565857 intergenic CG14852 + chr3R_35_14565001 chr3R_14565001 RAL-138 1944 chr3R 14608445 14608469 chr3R 14608562 14608566 5 113 3.0 4.5 3.8 1.0 121 chr3R 14608445 intergenic stumps + chr3R 14608506 intergenic stumps + chr3R 14608566 intergenic stumps + chr3R_5_14605001 chr3R_14605001 RAL-138 1945 chr3R 14617002 14617059 chr3R 14617103 14617160 7 100 2.5 3.0 2.8 1.8 158 chr3R 14617002 exon CG14853 + chr3R 14617081 intron CG14853 + chr3R 14617160 intron CG14853 + chr3R_7_14615001 chr3R_14615001 RAL-138 1946 chr3R 14662292 14662339 chr3R 14662397 14662443 20 106 6.5 7.0 6.8 2.6 151 chr3R 14662292 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662443 exon Rad17 - chr3R_20_14660001 chr3R_14660001 RAL-138 1947 chr3R 14704385 14704417 chr3R 14704466 14704512 7 94 2.5 2.0 2.2 2.2 127 chr3R 14704385 intron kibra - chr3R 14704448 intron kibra - chr3R 14704512 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-138 1948 chr3R 14743752 14743798 chr3R 14743868 14743916 14 113 4.5 2.5 3.5 3.1 164 chr3R 14743752 intron jvl + chr3R 14743834 intron jvl + chr3R 14743916 intron jvl + chr3R_14_14740001 chr3R_14740001 RAL-138 1949 chr3R 14842544 14842589 chr3R 14842648 14842698 8 105 5.5 4.5 5.0 1.3 154 chr3R 14842544 intron btsz - chr3R 14842621 intron btsz - chr3R 14842698 intron btsz - chr3R_8_14840001 chr3R_14840001 RAL-138 1950 chr3R 14879020 14879057 chr3R 14879129 14879166 4 109 4.0 2.0 3.0 1.0 146 chr3R 14879020 intergenic CG3631 + chr3R 14879093 intergenic CG3631 + chr3R 14879166 intergenic CG3631 + chr3R_4_14875001 chr3R_14875001 RAL-138 1951 chr3R 14880735 14880750 chr3R 14880976 14880990 4 241 20.5 20.5 20.5 0.2 255 chr3R 14880735 exon CG3631 + chr3R 14880862 intron CG3631 + chr3R 14880990 exon CG3631 + chr3R_4_14880001 chr3R_14880001 RAL-138 1952 chr3R 14881461 14881511 chr3R 14881597 14881635 7 134 22.0 18.0 20.0 0.3 174 chr3R 14881461 exon CG3631 + chr3R 14881548 intron CG3631 + chr3R 14881635 exon CG3631 + chr3R_7_14880001 chr3R_14880001 RAL-138 1953 chr3R 14882796 14882838 chr3R 14882895 14882941 11 104 1.5 5.0 3.2 2.6 145 chr3R 14882796 exon Rrp6 - chr3R 14882868 intron Rrp6 - chr3R 14882941 exon Rrp6 - chr3R_11_14880001 chr3R_14880001 RAL-138 1954 chr3R 15006838 15006867 chr3R 15007242 15007271 4 404 2.0 1.0 1.5 1.6 433 chr3R 15006838 intergenic not near genes chr3R 15007054 intergenic not near genes chr3R 15007271 intergenic not near genes chr3R_4_15005001 chr3R_15005001 RAL-138 1955 chr3R 15036247 15036274 chr3R 15036352 15036378 4 104 3.0 2.0 2.5 1.1 131 chr3R 15036247 intergenic not near genes chr3R 15036312 intergenic not near genes chr3R 15036378 intergenic not near genes chr3R_4_15035001 chr3R_15035001 RAL-138 1956 chr3R 15061208 15061337 chr3R 15061310 15061440 37 97 0.5 1.0 0.8 20.6 232 chr3R 15061208 intron dpr9 - chr3R 15061324 intron dpr9 - chr3R 15061440 intron dpr9 - chr3R_37_15060001 chr3R_15060001 RAL-138 1957 chr3R 15061345 15061352 chr3R 15061413 15061455 6 95 1.5 15.0 8.2 0.7 110 chr3R 15061345 intron dpr9 - chr3R 15061400 intron dpr9 - chr3R 15061455 intron dpr9 - chr3R_6_15060001 chr3R_15060001 RAL-138 1958 chr3R 15076631 15076683 chr3R 15076740 15076775 5 102 7.0 3.5 5.2 0.8 144 chr3R 15076631 intron dpr9 - chr3R 15076703 intron dpr9 - chr3R 15076775 intron dpr9 - chr3R_5_15075001 chr3R_15075001 RAL-138 1959 chr3R 15079782 15079806 chr3R 15080048 15080072 pogo 12 266 10.5 0.5 5.5 1.8 290 chr3R 15079782 3` UTR CG6966 - chr3R 15079927 3` UTR CG6966 - chr3R 15080072 3` UTR CG6966 - chr3R_12_15075001 chr3R_15075001 RAL-138 1960 chr3R 15089813 15089824 chr3R 15089918 15089927 5 105 0.5 3.5 2.0 1.7 114 chr3R 15089813 intron CG6966 - chr3R 15089870 intron CG6966 - chr3R 15089927 intron CG6966 - chr3R_5_15085001 chr3R_15085001 RAL-138 1961 chr3R 15102469 15102527 chr3R 15109753 15109807 412 10 7282 3.0 4.5 3.8 2.1 7338 chr3R 15102469 intron CG42788 - chr3R 15106138 intron CG42788 - chr3R 15109807 intron CG42788 - chr3R_10_15105001 chr3R_15105001 RAL-138 1962 chr3R 15132040 15132069 chr3R 15135123 15135154 Juan 12 3085 5.5 3.5 4.5 2.2 3114 chr3R 15132040 intergenic CG42788 - chr3R 15133597 intergenic not near genes chr3R 15135154 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 RAL-138 1963 chr3R 15160542 15160592 chr3R 15160665 15160715 4 123 1.5 2.0 1.8 1.4 173 chr3R 15160542 intron Gyc88E + chr3R 15160628 intron Gyc88E + chr3R 15160715 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-138 1964 chr3R 15190635 15190666 chr3R 15190785 15190816 6 150 2.5 3.0 2.8 1.6 181 chr3R 15190635 3` UTR Gyc88E + chr3R 15190726 3` UTR Gyc88E + chr3R 15190816 3` UTR Gyc88E + chr3R_6_15190001 chr3R_15190001 RAL-138 1965 chr3R 15246905 15246951 chr3R 15247114 15247160 23 209 9.0 6.0 7.5 2.7 255 chr3R 15246905 intergenic CG6499 -,Hsc70-4 + chr3R 15247032 intergenic CG6499 -,Hsc70-4 + chr3R 15247160 intergenic CG6499 - chr3R_23_15245001 chr3R_15245001 RAL-138 1966 chr3R 15286987 15286987 chr3R 21907534 21907536 31 6620548 15.5 13.0 14.2 2.0 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_31_18595001 chr3R_18595001 RAL-138 1967 chr3R 15286988 15286988 chr3R 21907534 21907536 20 6620547 15.5 13.0 14.2 1.3 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_20_18595001 chr3R_18595001 RAL-138 1968 chr3R 15406135 15406171 chr3R 15406241 15406277 5 106 3.5 1.0 2.2 1.6 142 chr3R 15406135 intron CG6125 - chr3R 15406206 intron CG6125 - chr3R 15406277 intron CG6125 - chr3R_5_15405001 chr3R_15405001 RAL-138 1969 chr3R 15416228 15416241 chr3R 15416333 15416346 8 103 26.0 9.5 17.8 0.4 118 chr3R 15416228 3` UTR Atx2 + chr3R 15416287 3` UTR Atx2 + chr3R 15416346 3` UTR Atx2 + chr3R_8_15415001 chr3R_15415001 RAL-138 1970 chr3R 15416246 15416267 chr3R 15416329 15416372 12 101 10.5 9.5 10.0 1.1 126 chr3R 15416246 3` UTR Atx2 + chr3R 15416309 3` UTR Atx2 + chr3R 15416372 3` UTR Atx2 + chr3R_12_15415001 chr3R_15415001 RAL-138 1971 chr3R 15416269 15416279 chr3R 15416374 15416383 4 105 9.5 25.5 17.5 0.2 114 chr3R 15416269 3` UTR Atx2 + chr3R 15416326 3` UTR Atx2 + chr3R 15416383 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-138 1972 chr3R 15439542 15439558 chr3R 15439707 15439723 11 165 9.5 0.0 4.8 1.9 181 chr3R 15439542 intergenic Act88F + chr3R 15439632 intergenic Act88F + chr3R 15439723 intergenic Act88F + chr3R_11_15435001 chr3R_15435001 RAL-138 1973 chr3R 15452254 15452305 chr3R 15452355 15452407 14 102 3.5 3.5 3.5 3.1 153 chr3R 15452254 intron AdamTS-A - chr3R 15452330 intron AdamTS-A - chr3R 15452407 intron AdamTS-A - chr3R_14_15450001 chr3R_15450001 RAL-138 1974 chr3R 15497644 15497700 chr3R 15497770 15497790 9 111 2.5 2.0 2.2 2.8 146 chr3R 15497644 intergenic not near genes chr3R 15497717 intergenic not near genes chr3R 15497790 intergenic not near genes chr3R_9_15495001 chr3R_15495001 RAL-138 1975 chr3R 15516492 15516542 chr3R 15516610 15516660 9 118 2.0 2.5 2.2 2.8 168 chr3R 15516492 intergenic not near genes chr3R 15516576 intergenic not near genes chr3R 15516660 intergenic not near genes chr3R_9_15515001 chr3R_15515001 RAL-138 1976 chr3R 15601151 15601193 chr3R 15608698 15608740 412 6 7542 6.0 3.5 4.8 1.0 7589 chr3R 15601151 intergenic not near genes chr3R 15604946 intergenic not near genes chr3R 15608740 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-138 1977 chr3R 15618714 15618760 chr3R 15626203 15626218 blood 7 7492 0.5 1.5 1.0 3.5 7504 chr3R 15618714 intergenic not near genes chr3R 15622466 intergenic not near genes chr3R 15626218 intergenic not near genes chr3R_7_15620001 chr3R_15620001 RAL-138 1978 chr3R 15635194 15635234 chr3R 15635319 15635360 5 126 1.0 3.0 2.0 1.7 166 chr3R 15635194 intergenic CG43335 + chr3R 15635277 intergenic CG43335 + chr3R 15635360 intergenic CG43335 + chr3R_5_15635001 chr3R_15635001 RAL-138 1979 chr3R 15742956 15742997 chr3R 15743203 15743247 4 249 0.5 3.0 1.8 1.4 291 chr3R 15742956 intergenic not near genes chr3R 15743102 intergenic not near genes chr3R 15743247 intergenic not near genes chr3R_4_15740001 chr3R_15740001 RAL-138 1980 chr3R 15844084 15844132 chr3R 15844206 15844255 10 123 6.0 3.0 4.5 1.8 171 chr3R 15844084 exon spn-E + chr3R 15844170 3` UTR spn-E + chr3R 15844255 3` UTR spn-E + chr3R_10_15840001 chr3R_15840001 RAL-138 1981 chr3R 15868928 15868953 chr3R 15869031 15869056 8 102 5.5 0.0 2.8 2.1 128 chr3R 15868928 intron CG31183 - chr3R 15868992 intron CG31183 - chr3R 15869056 intron CG31183 - chr3R_8_15865001 chr3R_15865001 RAL-138 1982 chr3R 15897417 15897466 chr3R 15897522 15897571 18 104 4.0 3.0 3.5 4.0 154 chr3R 15897417 exon glob1 - chr3R 15897494 intron glob1 - chr3R 15897571 exon glob1 - chr3R_18_15895001 chr3R_15895001 RAL-138 1983 chr3R 15920267 15920269 chr3R 15920387 15920389 4 120 13.0 6.0 9.5 0.4 122 chr3R 15920267 intergenic not near genes chr3R 15920328 intergenic not near genes chr3R 15920389 intergenic not near genes chr3R_4_15920001 chr3R_15920001 RAL-138 1984 chr3R 15920276 15920310 chr3R 15920373 15920415 12 117 5.0 4.0 4.5 2.2 139 chr3R 15920276 intergenic not near genes chr3R 15920346 intergenic not near genes chr3R 15920415 intergenic CG4221 + chr3R_12_15920001 chr3R_15920001 RAL-138 1985 chr3R 15921347 15921389 chr3R 15921446 15921499 26 108 6.5 8.0 7.2 3.2 152 chr3R 15921347 intron CG4221 + chr3R 15921423 intron CG4221 + chr3R 15921499 intron CG4221 + chr3R_26_15920001 chr3R_15920001 RAL-138 1986 chr3R 15984485 15984533 chr3R 15984612 15984660 20 127 6.0 8.0 7.0 2.5 175 chr3R 15984485 intergenic not near genes chr3R 15984572 intergenic not near genes chr3R 15984660 intergenic not near genes chr3R_20_15980001 chr3R_15980001 RAL-138 1987 chr3R 16004926 16004939 chr3R 16005035 16005048 6 108 12.5 9.5 11.0 0.5 122 chr3R 16004926 3` UTR CR42839 - chr3R 16004987 3` UTR CR42839 - chr3R 16005048 3` UTR CR42839 - chr3R_6_16000001 chr3R_16000001 RAL-138 1988 chr3R 16004944 16004958 chr3R 16005027 16005067 11 106 11.0 7.0 9.0 1.1 123 chr3R 16004944 3` UTR CR42839 - chr3R 16005006 3` UTR CR42839 - chr3R 16005067 3` UTR CR42839 - chr3R_11_16000001 chr3R_16000001 RAL-138 1989 chr3R 16013109 16013161 chr3R 16013228 16013271 11 116 8.0 6.0 7.0 1.4 162 chr3R 16013109 intron GATAe + chr3R 16013190 intron GATAe + chr3R 16013271 intron GATAe + chr3R_11_16010001 chr3R_16010001 RAL-138 1990 chr3R 16033401 16033431 chr3R 16033507 16033537 8 106 4.0 4.0 4.0 1.6 136 chr3R 16033401 intron pnr + chr3R 16033469 intron pnr + chr3R 16033537 intron pnr + chr3R_8_16030001 chr3R_16030001 RAL-138 1991 chr3R 16034130 16034159 chr3R 16034238 16034267 9 105 4.0 8.5 6.2 1.2 137 chr3R 16034130 intron pnr + chr3R 16034198 intron pnr + chr3R 16034267 intron pnr + chr3R_9_16030001 chr3R_16030001 RAL-138 1992 chr3R 16094294 16094313 chr3R 16094540 16094559 15 246 6.0 9.5 7.8 1.7 265 chr3R 16094294 intron Mhcl - chr3R 16094426 intron Mhcl - chr3R 16094559 intron Mhcl - chr3R_15_16090001 chr3R_16090001 RAL-138 1993 chr3R 16189400 16189422 chr3R 16189814 16189834 invader4 9 424 5.5 3.5 4.5 1.6 434 chr3R 16189400 intron sra + chr3R 16189617 intron sra + chr3R 16189834 intron sra + chr3R_9_16185001 chr3R_16185001 RAL-138 1994 chr3R 16210978 16211035 chr3R 16211109 16211175 8 138 2.0 0.0 1.0 4.0 197 chr3R 16210978 intergenic not near genes chr3R 16211076 intergenic not near genes chr3R 16211175 intergenic not near genes chr3R_8_16210001 chr3R_16210001 RAL-138 1995 chr3R 16225062 16225113 chr3R 16225172 16225223 24 110 7.5 6.0 6.8 3.1 161 chr3R 16225062 intergenic not near genes chr3R 16225142 intergenic not near genes chr3R 16225223 intergenic tara + chr3R_24_16225001 chr3R_16225001 RAL-138 1996 chr3R 16246522 16246557 chr3R 16246623 16246657 17 101 1.0 11.5 6.2 2.4 135 chr3R 16246522 intron tara + chr3R 16246590 intron tara + chr3R 16246657 intron tara + chr3R_17_16245001 chr3R_16245001 RAL-138 1997 chr3R 16255675 16255704 chr3R 16255780 16255810 12 105 7.0 0.0 3.5 2.7 135 chr3R 16255675 intron tara + chr3R 16255742 intron tara + chr3R 16255810 intron tara + chr3R_12_16255001 chr3R_16255001 RAL-138 1998 chr3R 16256558 16256612 chr3R 16256673 16256738 10 121 8.5 0.0 4.2 1.9 180 chr3R 16256558 intron tara + chr3R 16256648 intron tara + chr3R 16256738 intron tara + chr3R_10_16255001 chr3R_16255001 RAL-138 1999 chr3R 16260834 16260955 chr3R 16260939 16261078 20 117 0.5 0.5 0.5 13.3 244 chr3R 16260834 intergenic not near genes chr3R 16260956 intergenic bor - chr3R 16261078 intergenic bor - chr3R_20_16260001 chr3R_16260001 RAL-138 2000 chr3R 16264093 16264142 chr3R 16264242 16264288 30 149 8.5 15.5 12.0 2.3 195 chr3R 16264093 5` UTR bor - chr3R 16264190 intergenic bor -,asun + chr3R 16264288 5` UTR asun + chr3R_30_16260001 chr3R_16260001 RAL-138 2001 chr3R 16430885 16430914 chr3R 16431288 16431290 7 402 45.0 37.5 41.2 0.2 405 chr3R 16430885 exon CG31279 + chr3R 16431088 exon CG31279 + chr3R 16431290 exon CG31279 + chr3R_7_16430001 chr3R_16430001 RAL-138 2002 chr3R 16519905 16519918 chr3R 16520023 16520036 5 116 8.0 2.0 5.0 0.8 131 chr3R 16519905 intron CG42342 + chr3R 16519970 intron CG42342 + chr3R 16520036 intron CG42342 + chr3R_5_16515001 chr3R_16515001 RAL-138 2003 chr3R 16548755 16548811 chr3R 16548873 16548926 22 115 5.5 3.5 4.5 4.0 171 chr3R 16548755 intron CG42342 + chr3R 16548840 intron CG42342 + chr3R 16548926 intron CG42342 + chr3R_22_16545001 chr3R_16545001 RAL-138 2004 chr3R 16582892 16582912 chr3R 16582996 16582997 4 98 11.0 12.5 11.8 0.3 105 chr3R 16582892 intron Scp2 - chr3R 16582944 intron Scp2 - chr3R 16582997 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-138 2005 chr3R 16593785 16593830 chr3R 16593891 16593898 17 104 4.0 0.0 2.0 5.7 113 chr3R 16593785 intergenic not near genes chr3R 16593842 intergenic not near genes chr3R 16593898 intergenic not near genes chr3R_17_16590001 chr3R_16590001 RAL-138 2006 chr3R 16620361 16620388 chr3R 16620525 16620553 5 165 0.5 1.0 0.8 2.8 192 chr3R 16620361 intergenic CG14893 +,CG17560 + chr3R 16620457 intergenic CG14893 + chr3R 16620553 intergenic CG14893 + chr3R_5_16620001 chr3R_16620001 RAL-138 2007 chr3R 16633674 16633684 chr3R 16633799 16633809 5 125 8.0 14.5 11.2 0.4 135 chr3R 16633674 intron Fas1 + chr3R 16633742 intron Fas1 + chr3R 16633809 intron Fas1 + chr3R_5_16630001 chr3R_16630001 RAL-138 2008 chr3R 16642353 16642383 chr3R 16642454 16642484 6 101 2.0 4.5 3.2 1.4 131 chr3R 16642353 3` UTR nonA-l + chr3R 16642418 3` UTR nonA-l + chr3R 16642484 3` UTR nonA-l + chr3R_6_16640001 chr3R_16640001 RAL-138 2009 chr3R 16731912 16731920 chr3R 16732013 16732020 4 100 12.5 2.5 7.5 0.5 108 chr3R 16731912 intron Ubx - chr3R 16731966 intron Ubx - chr3R 16732020 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-138 2010 chr3R 16734858 16734877 chr3R 16734966 16734985 6 107 0.0 3.0 1.5 2.4 127 chr3R 16734858 intergenic Ubx - chr3R 16734922 intergenic Ubx - chr3R 16734985 intergenic not near genes chr3R_6_16730001 chr3R_16730001 RAL-138 2011 chr3R 16756300 16756336 chr3R 16762516 16762551 diver 4 6212 3.5 1.5 2.5 1.1 6251 chr3R 16756300 intron bxd - chr3R 16759426 intron bxd - chr3R 16762551 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-138 2012 chr3R 16787371 16787404 chr3R 16787502 16787555 6 138 3.5 3.0 3.2 1.4 184 chr3R 16787371 intergenic not near genes chr3R 16787463 intergenic not near genes chr3R 16787555 intergenic not near genes chr3R_6_16785001 chr3R_16785001 RAL-138 2013 chr3R 16804174 16804198 chr3R 16804755 16804779 6 581 3.0 0.0 1.5 2.4 605 chr3R 16804174 intergenic not near genes chr3R 16804476 intergenic not near genes chr3R 16804779 intergenic not near genes chr3R_6_16800001 chr3R_16800001 RAL-138 2014 chr3R 16935483 16935511 chr3R 16935627 16935655 9 144 6.5 7.5 7.0 1.1 172 chr3R 16935483 intron Abd-B - chr3R 16935569 intron Abd-B - chr3R 16935655 intron Abd-B - chr3R_9_16935001 chr3R_16935001 RAL-138 2015 chr3R 17076933 17076966 chr3R 17078028 17078034 7 1095 4.5 9.0 6.8 0.9 1101 chr3R 17076933 intron Keap1 - chr3R 17077484 intron Keap1 - chr3R 17078034 intron Keap1 - chr3R_7_17075001 chr3R_17075001 RAL-138 2016 chr3R 17122563 17122595 chr3R 17122675 17122708 5 111 6.0 3.0 4.5 0.9 145 chr3R 17122563 intron cher - chr3R 17122636 intron cher - chr3R 17122708 intron cher - chr3R_5_17120001 chr3R_17120001 RAL-138 2017 chr3R 17183209 17183260 chr3R 17183589 17183640 9 380 2.0 2.5 2.2 2.8 431 chr3R 17183209 intron Mur89F - chr3R 17183424 intron Mur89F - chr3R 17183640 intron Mur89F - chr3R_9_17180001 chr3R_17180001 RAL-138 2018 chr3R 17271778 17271833 chr3R 17271886 17271940 6 107 0.0 2.0 1.0 3.0 162 chr3R 17271778 intergenic not near genes chr3R 17271859 intergenic not near genes chr3R 17271940 intergenic not near genes chr3R_6_17270001 chr3R_17270001 RAL-138 2019 chr3R 17294643 17294689 chr3R 17295096 17295142 BS 9 453 5.0 1.5 3.2 2.1 499 chr3R 17294643 intergenic not near genes chr3R 17294892 intergenic not near genes chr3R 17295142 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-138 2020 chr3R 17335142 17335169 chr3R 17335235 17335265 8 96 4.0 4.5 4.2 1.5 123 chr3R 17335142 intron beat-IIa - chr3R 17335204 intron beat-IIa - chr3R 17335265 intron beat-IIa - chr3R_8_17335001 chr3R_17335001 RAL-138 2021 chr3R 17346686 17346713 chr3R 17348274 17348301 F-element 8 1588 2.0 3.5 2.8 2.1 1615 chr3R 17346686 intron beat-IIa - chr3R 17347494 intron beat-IIa - chr3R 17348301 intron beat-IIa - chr3R_8_17345001 chr3R_17345001 RAL-138 2022 chr3R 17355469 17355510 chr3R 17355572 17355612 7 102 3.5 2.0 2.8 1.8 143 chr3R 17355469 intron beat-IIa - chr3R 17355540 intron beat-IIa - chr3R 17355612 intron beat-IIa - chr3R_7_17355001 chr3R_17355001 RAL-138 2023 chr3R 17463130 17463173 chr3R 17463240 17463283 5 110 2.0 0.0 1.0 2.5 153 chr3R 17463130 intergenic not near genes chr3R 17463206 intergenic not near genes chr3R 17463283 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-138 2024 chr3R 17497937 17497944 chr3R 17498048 17498055 7 111 18.5 7.5 13.0 0.5 118 chr3R 17497937 intron Dscam3 - chr3R 17497996 intron Dscam3 - chr3R 17498055 intron Dscam3 - chr3R_7_17495001 chr3R_17495001 RAL-138 2025 chr3R 17497945 17497993 chr3R 17498047 17498104 29 109 7.0 7.0 7.0 3.6 159 chr3R 17497945 intron Dscam3 - chr3R 17498024 intron Dscam3 - chr3R 17498104 intron Dscam3 - chr3R_29_17495001 chr3R_17495001 RAL-138 2026 chr3R 17591300 17591314 chr3R 17591726 17591736 F-element 4 437 4.5 3.5 4.0 0.8 436 chr3R 17591300 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591736 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-138 2027 chr3R 17612435 17612469 chr3R 17612570 17612593 5 131 6.0 1.0 3.5 1.1 158 chr3R 17612435 intergenic CG34281 + chr3R 17612514 intergenic CG34281 + chr3R 17612593 intergenic CG34281 + chr3R_5_17610001 chr3R_17610001 RAL-138 2028 chr3R 17653089 17653115 chr3R 17653205 17653231 5 115 2.0 8.0 5.0 0.8 142 chr3R 17653089 intron,intron CG14322 +,CR45223 - chr3R 17653160 intron,intron CG14322 +,CR45223 - chr3R 17653231 intron,intron CG14322 +,CR45223 - chr3R_5_17650001 chr3R_17650001 RAL-138 2029 chr3R 17723258 17723275 chr3R 17723382 17723399 5 123 0.0 5.5 2.8 1.3 141 chr3R 17723258 intergenic Pxt + chr3R 17723328 intergenic Pxt + chr3R 17723399 intergenic Pxt + chr3R_5_17720001 chr3R_17720001 RAL-138 2030 chr3R 17727057 17727100 chr3R 17727165 17727208 7 99 5.5 5.0 5.2 1.1 151 chr3R 17727057 intron Lgr1 + chr3R 17727132 intron Lgr1 + chr3R 17727208 intron Lgr1 + chr3R_7_17725001 chr3R_17725001 RAL-138 2031 chr3R 17773351 17773390 chr3R 17773470 17773510 26 119 6.0 16.0 11.0 2.2 159 chr3R 17773351 exon CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773510 exon CG43102 - chr3R_26_17770001 chr3R_17770001 RAL-138 2032 chr3R 17811169 17811180 chr3R 17811277 17811288 7 108 8.0 0.0 4.0 1.4 119 chr3R 17811169 intergenic CG18012 -,tinc + chr3R 17811228 intergenic CG18012 -,tinc + chr3R 17811288 intergenic CG18012 -,tinc + chr3R_7_17810001 chr3R_17810001 RAL-138 2033 chr3R 17818865 17818912 chr3R 17818969 17819016 9 104 3.0 3.5 3.2 2.1 151 chr3R 17818865 intron tinc + chr3R 17818940 intron tinc + chr3R 17819016 intron tinc + chr3R_9_17815001 chr3R_17815001 RAL-138 2034 chr3R 17891760 17891797 chr3R 17891894 17891930 11 134 6.0 11.5 8.8 1.1 170 chr3R 17891760 intron Rim - chr3R 17891845 intron Rim - chr3R 17891930 intron Rim - chr3R_11_17890001 chr3R_17890001 RAL-138 2035 chr3R 17925836 17925872 chr3R 17927328 17927364 hobo 4 1492 3.0 10.0 6.5 0.5 1528 chr3R 17925836 intron cpo + chr3R 17926600 intron cpo + chr3R 17927364 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-138 2036 chr3R 18025324 18025361 chr3R 18025430 18025467 5 105 3.5 3.5 3.5 1.1 143 chr3R 18025324 3` UTR CG7794 + chr3R 18025396 intergenic CG7794 + chr3R 18025467 intergenic CG7794 + chr3R_5_18025001 chr3R_18025001 RAL-138 2037 chr3R 18078130 18078154 chr3R 18078234 18078258 4 104 7.0 0.0 3.5 0.9 128 chr3R 18078130 intergenic not near genes chr3R 18078194 intergenic not near genes chr3R 18078258 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-138 2038 chr3R 18122880 18122914 chr3R 18122982 18123016 6 102 0.5 6.0 3.2 1.4 136 chr3R 18122880 intron sr + chr3R 18122948 intron sr + chr3R 18123016 intron sr + chr3R_6_18120001 chr3R_18120001 RAL-138 2039 chr3R 18235380 18235440 chr3R 18235487 18235547 37 107 1.0 9.5 5.2 6.0 167 chr3R 18235380 intergenic not near genes chr3R 18235464 intergenic not near genes chr3R 18235547 intergenic not near genes chr3R_37_18235001 chr3R_18235001 RAL-138 2040 chr3R 18295620 18295637 chr3R 18295910 18295928 INE-1 4 291 4.0 5.5 4.8 0.7 308 chr3R 18295620 intron l(3)05822 - chr3R 18295774 intron l(3)05822 - chr3R 18295928 intron l(3)05822 - chr3R_4_18295001 chr3R_18295001 RAL-138 2041 chr3R 18302979 18302981 chr3R 18303109 18303111 4 130 7.0 0.0 3.5 0.9 132 chr3R 18302979 intergenic CG7126 -,PKD - chr3R 18303045 intergenic CG7126 -,PKD - chr3R 18303111 intergenic PKD -,CG7126 - chr3R_4_18300001 chr3R_18300001 RAL-138 2042 chr3R 18328565 18328576 chr3R 18328666 18328677 4 101 6.5 8.5 7.5 0.5 112 chr3R 18328565 intron CG31235 - chr3R 18328621 intron CG31235 - chr3R 18328677 intron CG31235 - chr3R_4_18325001 chr3R_18325001 RAL-138 2043 chr3R 18355940 18355942 chr3R 27376720 27376720 6 9020780 24.5 55.5 40.0 0.1 9020780 chr3R 18355940 intron CG15803 - chr3R 22866330 intergenic not near genes chr3R 27376720 3` UTR side - chr3R_6_22865001 chr3R_22865001 RAL-138 2044 chr3R 18375586 18375614 chr3R 18375695 18375723 5 109 3.0 1.0 2.0 1.7 137 chr3R 18375586 5` UTR CR44946 + chr3R 18375654 5` UTR CR44946 + chr3R 18375723 5` UTR CR44946 + chr3R_5_18375001 chr3R_18375001 RAL-138 2045 chr3R 18394453 18394504 chr3R 18394555 18394585 9 99 3.5 2.0 2.8 2.4 132 chr3R 18394453 intron Vha100-2 - chr3R 18394519 intron Vha100-2 - chr3R 18394585 intron Vha100-2 - chr3R_9_18390001 chr3R_18390001 RAL-138 2046 chr3R 18466608 18466661 chr3R 18466718 18466770 10 110 0.5 3.5 2.0 3.3 162 chr3R 18466608 intron fru - chr3R 18466689 intron fru - chr3R 18466770 intron fru - chr3R_10_18465001 chr3R_18465001 RAL-138 2047 chr3R 18472259 18472292 chr3R 18472385 18472418 8 126 3.0 1.5 2.2 2.5 159 chr3R 18472259 intron fru - chr3R 18472338 intron fru - chr3R 18472418 intron fru - chr3R_8_18470001 chr3R_18470001 RAL-138 2048 chr3R 18500719 18500734 chr3R 18500862 18500880 4 145 1.0 7.5 4.2 0.8 161 chr3R 18500719 intron fru - chr3R 18500800 intron fru - chr3R 18500880 intron fru - chr3R_4_18500001 chr3R_18500001 RAL-138 2049 chr3R 18618244 18618284 chr3R 18618354 18618394 4 110 2.0 1.0 1.5 1.6 150 chr3R 18618244 intron,intron qin +,CG14304 - chr3R 18618319 intron,intron qin +,CG14304 - chr3R 18618394 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-138 2050 chr3R 18681800 18681832 chr3R 18681919 18681951 8 119 3.0 1.0 2.0 2.7 151 chr3R 18681800 intron CG7708 + chr3R 18681876 intron CG7708 + chr3R 18681951 intron CG7708 + chr3R_8_18680001 chr3R_18680001 RAL-138 2051 chr3R 18695741 18695752 chr3R 18695849 18695858 5 107 6.0 0.0 3.0 1.2 117 chr3R 18695741 3` UTR CG34282 + chr3R 18695800 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-138 2052 chr3R 18704159 18704183 chr3R 18704266 18704293 9 109 17.5 11.0 14.2 0.6 134 chr3R 18704159 intergenic not near genes chr3R 18704226 intergenic not near genes chr3R 18704293 intergenic not near genes chr3R_9_18700001 chr3R_18700001 RAL-138 2053 chr3R 18704187 18704193 chr3R 18704258 18704303 4 100 13.0 9.0 11.0 0.3 116 chr3R 18704187 intergenic not near genes chr3R 18704245 intergenic not near genes chr3R 18704303 intergenic not near genes chr3R_4_18700001 chr3R_18700001 RAL-138 2054 chr3R 18704195 18704206 chr3R 18704255 18704316 6 94 9.5 9.5 9.5 0.6 121 chr3R 18704195 intergenic not near genes chr3R 18704256 intergenic not near genes chr3R 18704316 intergenic not near genes chr3R_6_18700001 chr3R_18700001 RAL-138 2055 chr3R 18722949 18722955 chr3R 18723059 18723064 8 110 0.0 4.5 2.2 2.5 115 chr3R 18722949 intron Cha + chr3R 18723006 intron Cha + chr3R 18723064 intron Cha + chr3R_8_18720001 chr3R_18720001 RAL-138 2056 chr3R 18730000 18730036 chr3R 18730101 18730137 14 97 9.5 8.5 9.0 1.4 137 chr3R 18730000 exon Cha + chr3R 18730068 intron Cha + chr3R 18730137 exon Cha + chr3R_14_18730001 chr3R_18730001 RAL-138 2057 chr3R 18791497 18791518 chr3R 18791574 18791593 6 87 7.0 4.0 5.5 0.9 96 chr3R 18791497 intron CG7720 - chr3R 18791545 intron CG7720 - chr3R 18791593 intron CG7720 - chr3R_6_18790001 chr3R_18790001 RAL-138 2058 chr3R 18812070 18812107 chr3R 18812173 18812210 10 103 4.5 5.0 4.8 1.7 140 chr3R 18812070 intron CG18208 - chr3R 18812140 intron CG18208 - chr3R 18812210 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-138 2059 chr3R 18817484 18817537 chr3R 18817607 18817660 5 123 0.0 1.0 0.5 3.3 176 chr3R 18817484 intron CG18208 - chr3R 18817572 intron CG18208 - chr3R 18817660 intron CG18208 - chr3R_5_18815001 chr3R_18815001 RAL-138 2060 chr3R 18819256 18819301 chr3R 18819357 18819405 4 98 0.5 2.5 1.5 1.6 149 chr3R 18819256 intron CG18208 - chr3R 18819330 intron CG18208 - chr3R 18819405 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-138 2061 chr3R 18827851 18827892 chr3R 18827958 18827998 6 106 4.0 0.0 2.0 2.0 147 chr3R 18827851 intron CG18208 - chr3R 18827924 intron CG18208 - chr3R 18827998 intron CG18208 - chr3R_6_18825001 chr3R_18825001 RAL-138 2062 chr3R 18839791 18839818 chr3R 18839900 18839926 6 106 7.0 3.5 5.2 1.0 135 chr3R 18839791 intron CG18208 - chr3R 18839858 intron CG18208 - chr3R 18839926 intron CG18208 - chr3R_6_18835001 chr3R_18835001 RAL-138 2063 chr3R 18887577 18887595 chr3R 18887683 18887694 11 105 10.0 7.5 8.8 1.1 117 chr3R 18887577 intergenic not near genes chr3R 18887636 intergenic not near genes chr3R 18887694 intergenic not near genes chr3R_11_18885001 chr3R_18885001 RAL-138 2064 chr3R 19092376 19092421 chr3R 19092582 19092627 13 208 33.0 38.5 35.8 0.4 251 chr3R 19092376 intron cdi - chr3R 19092502 intron cdi - chr3R 19092627 intron cdi - chr3R_13_19090001 chr3R_19090001 RAL-138 2065 chr3R 19106801 19106846 chr3R 19106916 19106940 7 107 2.5 2.5 2.5 2.0 139 chr3R 19106801 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106940 intron CG6040 + chr3R_7_19105001 chr3R_19105001 RAL-138 2066 chr3R 19107532 19107573 chr3R 19107632 19107647 5 88 0.5 0.5 0.5 3.3 115 chr3R 19107532 intron CG6040 + chr3R 19107590 intron CG6040 + chr3R 19107647 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-138 2067 chr3R 19144674 19144719 chr3R 19144775 19144819 14 92 9.0 3.0 6.0 2.0 145 chr3R 19144674 intron Ppcs - chr3R 19144746 intron Ppcs - chr3R 19144819 intron Ppcs - chr3R_14_19140001 chr3R_19140001 RAL-138 2068 chr3R 19187660 19187704 chr3R 19187753 19187806 11 101 2.0 4.0 3.0 2.8 146 chr3R 19187660 intron CG31475 + chr3R 19187733 intron CG31475 + chr3R 19187806 intron CG31475 + chr3R_11_19185001 chr3R_19185001 RAL-138 2069 chr3R 19337191 19337207 chr3R 19337299 19337315 4 108 11.5 13.5 12.5 0.3 124 chr3R 19337191 intergenic not near genes chr3R 19337253 intergenic not near genes chr3R 19337315 intergenic not near genes chr3R_4_19335001 chr3R_19335001 RAL-138 2070 chr3R 19340389 19340406 chr3R 19340488 19340507 4 101 6.5 1.5 4.0 0.8 118 chr3R 19340389 intergenic not near genes chr3R 19340448 intergenic not near genes chr3R 19340507 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-138 2071 chr3R 19367632 19367653 chr3R 19367729 19367754 12 100 8.5 8.0 8.2 1.3 122 chr3R 19367632 intergenic not near genes chr3R 19367693 intergenic not near genes chr3R 19367754 intergenic not near genes chr3R_12_19365001 chr3R_19365001 RAL-138 2072 chr3R 19420091 19420128 chr3R 19420192 19420228 6 101 3.0 2.0 2.5 1.7 137 chr3R 19420091 intron CG31221 + chr3R 19420160 intron CG31221 + chr3R 19420228 intron CG31221 + chr3R_6_19420001 chr3R_19420001 RAL-138 2073 chr3R 19431929 19431962 chr3R 19432038 19432071 8 108 3.5 3.5 3.5 1.8 142 chr3R 19431929 intron CG31221 + chr3R 19432000 intron CG31221 + chr3R 19432071 intron CG31221 + chr3R_8_19430001 chr3R_19430001 RAL-138 2074 chr3R 19511484 19511535 chr3R 19511586 19511637 8 102 1.5 5.0 3.2 1.9 153 chr3R 19511484 intron Dys + chr3R 19511560 intron Dys + chr3R 19511637 intron Dys + chr3R_8_19510001 chr3R_19510001 RAL-138 2075 chr3R 19593481 19593517 chr3R 19593591 19593614 19 109 9.5 11.0 10.2 1.7 133 chr3R 19593481 intron Dys + chr3R 19593548 intron Dys + chr3R 19593614 intron Dys + chr3R_19_19590001 chr3R_19590001 RAL-138 2076 chr3R 19602712 19602747 chr3R 19602870 19602904 4 158 2.0 4.5 3.2 1.0 192 chr3R 19602712 intergenic CG7333 + chr3R 19602808 intergenic CG7333 + chr3R 19602904 intergenic CG7333 +,CG7342 + chr3R_4_19600001 chr3R_19600001 RAL-138 2077 chr3R 19667977 19668009 chr3R 19668082 19668117 5 107 1.5 5.5 3.5 1.1 140 chr3R 19667977 intron CG7432 + chr3R 19668047 intron CG7432 + chr3R 19668117 intron CG7432 + chr3R_5_19665001 chr3R_19665001 RAL-138 2078 chr3R 19702312 19702327 chr3R 19702416 19702433 9 104 4.5 3.0 3.8 1.9 121 chr3R 19702312 intergenic not near genes chr3R 19702372 intergenic not near genes chr3R 19702433 intergenic not near genes chr3R_9_19700001 chr3R_19700001 RAL-138 2079 chr3R 19718837 19718869 chr3R 19718987 19719019 4 146 3.0 2.5 2.8 1.1 182 chr3R 19718837 intergenic not near genes chr3R 19718928 intergenic not near genes chr3R 19719019 intergenic not near genes chr3R_4_19715001 chr3R_19715001 RAL-138 2080 chr3R 19729727 19729768 chr3R 19729827 19729829 7 84 4.0 2.5 3.2 1.7 102 chr3R 19729727 intergenic not near genes chr3R 19729778 intergenic not near genes chr3R 19729829 intergenic not near genes chr3R_7_19725001 chr3R_19725001 RAL-138 2081 chr3R 19738072 19738123 chr3R 19738209 19738258 8 125 4.0 2.0 3.0 2.0 186 chr3R 19738072 intron GluClalpha + chr3R 19738165 intron GluClalpha + chr3R 19738258 intron GluClalpha + chr3R_8_19735001 chr3R_19735001 RAL-138 2082 chr3R 19800657 19800707 chr3R 19800759 19800806 12 95 6.0 5.5 5.8 1.8 149 chr3R 19800657 intron bnl - chr3R 19800732 intron bnl - chr3R 19800806 intron bnl - chr3R_12_19800001 chr3R_19800001 RAL-138 2083 chr3R 19908274 19908302 chr3R 19908382 19908396 5 106 0.0 8.0 4.0 1.0 122 chr3R 19908274 intron RhoGAP92B + chr3R 19908335 intron RhoGAP92B + chr3R 19908396 intron RhoGAP92B + chr3R_5_19905001 chr3R_19905001 RAL-138 2084 chr3R 19940680 19940885 chr3R 19940806 19940986 5 107 2.5 5.5 4.0 1.0 306 chr3R 19940680 intron Hs6st - chr3R 19940833 intron Hs6st - chr3R 19940986 intron Hs6st - chr3R_5_19940001 chr3R_19940001 RAL-138 2085 chr3R 19967542 19967592 chr3R 19967650 19967700 4 108 0.0 0.5 0.2 3.3 158 chr3R 19967542 intron Hs6st - chr3R 19967621 intron Hs6st - chr3R 19967700 intron Hs6st - chr3R_4_19965001 chr3R_19965001 RAL-138 2086 chr3R 20059458 20059493 chr3R 20059544 20059598 9 103 4.5 5.0 4.8 1.6 140 chr3R 20059458 intron CG4390 - chr3R 20059528 intron CG4390 - chr3R 20059598 exon CG4390 - chr3R_9_20055001 chr3R_20055001 RAL-138 2087 chr3R 20156670 20156705 chr3R 20165864 20165900 roo 5 9194 4.5 2.0 3.2 1.2 9230 chr3R 20156670 intergenic not near genes chr3R 20161285 intergenic not near genes chr3R 20165900 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-138 2088 chr3R 20180625 20180660 chr3R 20180942 20180961 8 314 1.0 1.0 1.0 4.0 336 chr3R 20180625 intergenic not near genes chr3R 20180793 intergenic not near genes chr3R 20180961 intergenic not near genes chr3R_8_20180001 chr3R_20180001 RAL-138 2089 chr3R 20205553 20205593 chr3R 20205700 20205740 4 147 1.0 2.0 1.5 1.6 187 chr3R 20205553 intron Nlg4 + chr3R 20205646 intron Nlg4 + chr3R 20205740 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-138 2090 chr3R 20226901 20226908 chr3R 20227014 20227024 5 115 7.0 2.0 4.5 0.9 123 chr3R 20226901 intron Nlg4 + chr3R 20226962 intron Nlg4 + chr3R 20227024 intron Nlg4 + chr3R_5_20225001 chr3R_20225001 RAL-138 2091 chr3R 20245268 20245299 chr3R 20248895 20248934 F-element 8 3634 3.0 1.0 2.0 2.7 3666 chr3R 20245268 3` UTR Nlg4 + chr3R 20247101 intergenic not near genes chr3R 20248934 intergenic not near genes chr3R_8_20245001 chr3R_20245001 RAL-138 2092 chr3R 20266500 20266542 chr3R 20272996 20273038 Burdock 8 6494 4.5 3.0 3.8 1.7 6538 chr3R 20266500 intron cic + chr3R 20269769 intron cic + chr3R 20273038 intron cic + chr3R_8_20265001 chr3R_20265001 RAL-138 2093 chr3R 20280021 20280075 chr3R 20280215 20280269 9 194 0.5 3.0 1.8 3.2 248 chr3R 20280021 intron cic + chr3R 20280145 intron cic + chr3R 20280269 intron cic + chr3R_9_20280001 chr3R_20280001 RAL-138 2094 chr3R 20330975 20331027 chr3R 20331486 20331538 roo 14 511 3.5 3.5 3.5 3.1 563 chr3R 20330975 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331538 intergenic not near genes chr3R_14_20330001 chr3R_20330001 RAL-138 2095 chr3R 20345363 20345399 chr3R 20345477 20345513 4 114 0.0 5.0 2.5 1.1 150 chr3R 20345363 intergenic not near genes chr3R 20345438 intergenic not near genes chr3R 20345513 intergenic not near genes chr3R_4_20345001 chr3R_20345001 RAL-138 2096 chr3R 20352065 20352079 chr3R 20352195 20352209 4 130 2.0 4.5 3.2 1.0 144 chr3R 20352065 intergenic not near genes chr3R 20352137 intergenic not near genes chr3R 20352209 intergenic not near genes chr3R_4_20350001 chr3R_20350001 RAL-138 2097 chr3R 20424919 20424977 chr3R 20425038 20425069 18 112 2.0 2.5 2.2 5.6 150 chr3R 20424919 intron Gfrl - chr3R 20424994 intron Gfrl - chr3R 20425069 intron Gfrl - chr3R_18_20425001 chr3R_20425001 RAL-138 2098 chr3R 20430876 20430890 chr3R 20430982 20430996 4 106 6.5 20.0 13.2 0.3 120 chr3R 20430876 intron Gfrl - chr3R 20430936 intron Gfrl - chr3R 20430996 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-138 2099 chr3R 20441104 20441153 chr3R 20441276 20441325 12 172 5.5 3.5 4.5 2.2 221 chr3R 20441104 intron Gfrl - chr3R 20441214 intron Gfrl - chr3R 20441325 intron Gfrl - chr3R_12_20440001 chr3R_20440001 RAL-138 2100 chr3R 20455957 20455989 chr3R 20456058 20456070 5 95 5.5 10.5 8.0 0.6 113 chr3R 20455957 intron Gfrl - chr3R 20456014 intron Gfrl - chr3R 20456070 intron Gfrl - chr3R_5_20455001 chr3R_20455001 RAL-138 2101 chr3R 20469432 20469474 chr3R 20469540 20469582 8 106 0.0 1.5 0.8 4.4 150 chr3R 20469432 intron Gfrl - chr3R 20469507 intron Gfrl - chr3R 20469582 intron Gfrl - chr3R_8_20465001 chr3R_20465001 RAL-138 2102 chr3R 20482398 20482450 chr3R 20482513 20482564 14 114 0.0 7.5 3.8 2.9 166 chr3R 20482398 intron Gfrl - chr3R 20482481 intron Gfrl - chr3R 20482564 intron Gfrl - chr3R_14_20480001 chr3R_20480001 RAL-138 2103 chr3R 20506588 20506609 chr3R 20507415 20507437 BS 6 828 0.5 3.5 2.0 2.0 849 chr3R 20506588 intergenic Or92a + chr3R 20507012 intergenic CG4288 - chr3R 20507437 3` UTR CG4288 - chr3R_6_20505001 chr3R_20505001 RAL-138 2104 chr3R 20518431 20518472 chr3R 20518545 20518586 8 114 4.5 2.0 3.2 1.9 155 chr3R 20518431 intergenic not near genes chr3R 20518508 intergenic not near genes chr3R 20518586 intergenic not near genes chr3R_8_20515001 chr3R_20515001 RAL-138 2105 chr3R 20549385 20549415 chr3R 20549510 20549540 9 125 6.5 4.0 5.2 1.5 155 chr3R 20549385 intron Stat92E - chr3R 20549462 intron Stat92E - chr3R 20549540 intron Stat92E - chr3R_9_20545001 chr3R_20545001 RAL-138 2106 chr3R 20553441 20553481 chr3R 20553555 20553595 13 112 0.0 7.5 3.8 2.7 154 chr3R 20553441 intron,intron att-ORFA -,att-ORFB - chr3R 20553518 intron,intron att-ORFA -,att-ORFB - chr3R 20553595 exon,exon att-ORFA -,att-ORFB - chr3R_13_20550001 chr3R_20550001 RAL-138 2107 chr3R 20560647 20560651 chr3R 20560752 20560756 4 105 0.0 6.5 3.2 1.0 109 chr3R 20560647 intergenic CG5191 +,CG15922 - chr3R 20560702 intergenic CG5191 +,CG15922 - chr3R 20560756 intergenic CG5191 +,CG15922 - chr3R_4_20560001 chr3R_20560001 RAL-138 2108 chr3R 20561578 20561589 chr3R 20562281 20562302 6 711 0.0 5.5 2.8 1.6 724 chr3R 20561578 intron CG5191 + chr3R 20561940 intron CG5191 + chr3R 20562302 intron CG5191 + chr3R_6_20560001 chr3R_20560001 RAL-138 2109 chr3R 20594463 20594492 chr3R 20594578 20594607 8 115 3.0 0.0 1.5 3.2 144 chr3R 20594463 intron bon + chr3R 20594535 intron bon + chr3R 20594607 intron bon + chr3R_8_20590001 chr3R_20590001 RAL-138 2110 chr3R 20596168 20596214 chr3R 20596280 20596326 16 112 2.5 5.5 4.0 3.2 158 chr3R 20596168 intron bon + chr3R 20596247 intron bon + chr3R 20596326 intron bon + chr3R_16_20595001 chr3R_20595001 RAL-138 2111 chr3R 20657296 20657331 chr3R 20657466 20657501 23 170 6.5 2.5 4.5 4.2 205 chr3R 20657296 intron Nep4 - chr3R 20657398 intron Nep4 - chr3R 20657501 intron Nep4 - chr3R_23_20655001 chr3R_20655001 RAL-138 2112 chr3R 20666726 20666745 chr3R 20667477 20667511 6 754 24.5 3.5 14.0 0.4 785 chr3R 20666726 intergenic not near genes chr3R 20667118 intergenic not near genes chr3R 20667511 intergenic not near genes chr3R_6_20665001 chr3R_20665001 RAL-138 2113 chr3R 20669905 20669945 chr3R 20670021 20670061 19 116 10.5 6.5 8.5 2.0 156 chr3R 20669905 intron Cpr92F + chr3R 20669983 intron Cpr92F + chr3R 20670061 intron Cpr92F + chr3R_19_20665001 chr3R_20665001 RAL-138 2114 chr3R 20735005 20735039 chr3R 20735095 20735148 5 97 2.0 2.0 2.0 1.7 143 chr3R 20735005 intergenic not near genes chr3R 20735076 intergenic not near genes chr3R 20735148 intergenic cdc2c + chr3R_5_20735001 chr3R_20735001 RAL-138 2115 chr3R 20841544 20841596 chr3R 20841732 20841784 15 187 3.0 4.0 3.5 3.3 240 chr3R 20841544 intergenic not near genes chr3R 20841664 intergenic CG15695 + chr3R 20841784 intergenic CG15695 + chr3R_15_20840001 chr3R_20840001 RAL-138 2116 chr3R 20854466 20854515 chr3R 20859281 20859317 Doc 6 4812 9.5 4.5 7.0 0.8 4851 chr3R 20854466 intron Ir93a - chr3R 20856892 intron Ir93a - chr3R 20859317 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-138 2117 chr3R 20900523 20900572 chr3R 20900629 20900678 13 106 1.5 4.5 3.0 3.2 155 chr3R 20900523 intergenic not near genes chr3R 20900600 intergenic not near genes chr3R 20900678 intergenic not near genes chr3R_13_20900001 chr3R_20900001 RAL-138 2118 chr3R 20931425 20931475 chr3R 20931572 20931622 25 145 5.5 7.5 6.5 3.3 197 chr3R 20931425 intron CG31191 - chr3R 20931524 intron CG31191 - chr3R 20931622 intron CG31191 - chr3R_25_20930001 chr3R_20930001 RAL-138 2119 chr3R 20937760 20937811 chr3R 20937921 20937972 4 161 0.0 2.5 1.2 1.8 212 chr3R 20937760 intron CG31191 - chr3R 20937866 intron CG31191 - chr3R 20937972 intron CG31191 - chr3R_4_20935001 chr3R_20935001 RAL-138 2120 chr3R 20950269 20950321 chr3R 20950407 20950459 6 138 2.0 2.5 2.2 1.9 190 chr3R 20950269 intron Atpalpha + chr3R 20950364 intron Atpalpha + chr3R 20950459 intron Atpalpha + chr3R_6_20950001 chr3R_20950001 RAL-138 2121 chr3R 20998007 20998016 chr3R 20998121 20998130 5 114 0.0 8.5 4.2 1.0 123 chr3R 20998007 intron Calx + chr3R 20998068 intron Calx + chr3R 20998130 intron Calx + chr3R_5_20995001 chr3R_20995001 RAL-138 2122 chr3R 21076306 21076345 chr3R 21076407 21076449 18 104 8.0 7.5 7.8 2.0 143 chr3R 21076306 exon dmrt93B + chr3R 21076378 intron dmrt93B + chr3R 21076449 intron dmrt93B + chr3R_18_21075001 chr3R_21075001 RAL-138 2123 chr3R 21129797 21129843 chr3R 21129900 21129946 5 103 1.5 0.0 0.8 2.8 149 chr3R 21129797 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129872 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129946 intergenic Obp93a -,Ice2 +,CG5793 + chr3R_5_21125001 chr3R_21125001 RAL-138 2124 chr3R 21141653 21141682 chr3R 21150159 21150187 Tirant 7 8503 3.5 3.5 3.5 1.6 8534 chr3R 21141653 intron SNF4Agamma + chr3R 21145920 intron SNF4Agamma + chr3R 21150187 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-138 2125 chr3R 21165081 21165118 chr3R 21165189 21165226 6 108 0.0 4.0 2.0 2.0 145 chr3R 21165081 intron,3` UTR SNF4Agamma +,CG5810 + chr3R 21165154 intron,3` UTR SNF4Agamma +,CG5810 + chr3R 21165226 intron,3` UTR SNF4Agamma +,Snmp1 - chr3R_6_21165001 chr3R_21165001 RAL-138 2126 chr3R 21274365 21274403 chr3R 21274468 21274521 9 113 3.0 3.5 3.2 2.1 156 chr3R 21274365 3` UTR CG3301 - chr3R 21274443 intron CG3301 - chr3R 21274521 3` UTR CG3301 - chr3R_9_21270001 chr3R_21270001 RAL-138 2127 chr3R 21326284 21326543 chr3R 21907534 21907534 4 581063 32.0 13.0 22.5 0.2 581250 chr3R 21326284 intron CG16791 - chr3R 21616909 intron InR - chr3R 21907534 intergenic CG6678 + chr3R_4_21615001 chr3R_21615001 RAL-138 2128 chr3R 9393034 9393035 chr3R 21326806 21326811 5 11933775 10.5 39.0 24.8 0.2 11933777 chr3R 9393034 intron FER - chr3R 15359922 exon ldlCp - chr3R 21326811 intron CG16791 - chr3R_5_15355001 chr3R_15355001 RAL-138 2129 chr3R 21343061 21343078 chr3R 21343133 21343185 11 101 5.0 10.0 7.5 1.3 124 chr3R 21343061 intron CG16791 - chr3R 21343123 intron CG16791 - chr3R 21343185 intron CG16791 - chr3R_11_21340001 chr3R_21340001 RAL-138 2130 chr3R 21343805 21343838 chr3R 21343923 21343956 15 117 7.5 7.0 7.2 1.8 151 chr3R 21343805 intron CG16791 - chr3R 21343880 intron CG16791 - chr3R 21343956 intron CG16791 - chr3R_15_21340001 chr3R_21340001 RAL-138 2131 chr3R 21346463 21346465 chr3R 21346575 21346578 4 112 5.0 0.5 2.8 1.1 115 chr3R 21346463 intron CG16791 - chr3R 21346520 intron CG16791 - chr3R 21346578 intron CG16791 - chr3R_4_21345001 chr3R_21345001 RAL-138 2132 chr3R 21346476 21346510 chr3R 21346572 21346623 5 106 5.0 0.5 2.8 1.3 147 chr3R 21346476 intron CG16791 - chr3R 21346550 intron CG16791 - chr3R 21346623 intron CG16791 - chr3R_5_21345001 chr3R_21345001 RAL-138 2133 chr3R 21383269 21383295 chr3R 21383370 21383396 7 101 0.0 5.5 2.8 1.8 127 chr3R 21383269 intergenic not near genes chr3R 21383332 intergenic not near genes chr3R 21383396 intergenic not near genes chr3R_7_21380001 chr3R_21380001 RAL-138 2134 chr3R 21390409 21390440 chr3R 21390518 21390549 14 109 6.0 4.0 5.0 2.3 140 chr3R 21390409 3` UTR bap + chr3R 21390479 intergenic bap + chr3R 21390549 intergenic bap + chr3R_14_21390001 chr3R_21390001 RAL-138 2135 chr3R 21393478 21393484 chr3R 21393613 21393619 4 135 4.0 6.0 5.0 0.7 141 chr3R 21393478 intergenic not near genes chr3R 21393548 intergenic not near genes chr3R 21393619 intergenic not near genes chr3R_4_21390001 chr3R_21390001 RAL-138 2136 chr3R 21408822 21408866 chr3R 21408921 21408970 6 103 0.5 2.0 1.2 2.7 148 chr3R 21408822 intergenic CheB93b +,CheB93a + chr3R 21408896 intergenic CheB93b + chr3R 21408970 intergenic CheB93b + chr3R_6_21405001 chr3R_21405001 RAL-138 2137 chr3R 21419058 21419124 chr3R 21419176 21419229 4 108 0.0 2.5 1.2 1.8 171 chr3R 21419058 intron lbl - chr3R 21419144 intron lbl - chr3R 21419229 intron lbl - chr3R_4_21415001 chr3R_21415001 RAL-138 2138 chr3R 21422862 21422899 chr3R 21423023 21423060 17 161 12.5 2.0 7.2 2.1 198 chr3R 21422862 intron lbl - chr3R 21422961 intron lbl - chr3R 21423060 intron lbl - chr3R_17_21420001 chr3R_21420001 RAL-138 2139 chr3R 21441354 21441365 chr3R 21441462 21441473 12 108 10.0 0.0 5.0 2.0 119 chr3R 21441354 intergenic lbe - chr3R 21441414 intergenic lbe - chr3R 21441473 intergenic lbe - chr3R_12_21440001 chr3R_21440001 RAL-138 2140 chr3R 21472009 21472030 chr3R 21472115 21472136 4 106 2.0 4.5 3.2 1.0 127 chr3R 21472009 intergenic not near genes chr3R 21472072 intergenic not near genes chr3R 21472136 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-138 2141 chr3R 21519965 21520121 chr3R 21520091 21520240 22 124 1.0 1.0 1.0 11.0 275 chr3R 21519965 intergenic not near genes chr3R 21520102 intergenic not near genes chr3R 21520240 intergenic not near genes chr3R_22_21520001 chr3R_21520001 RAL-138 2142 chr3R 21539398 21539434 chr3R 21539488 21539508 6 81 2.5 6.0 4.2 1.2 110 chr3R 21539398 intergenic not near genes chr3R 21539453 intergenic not near genes chr3R 21539508 intergenic not near genes chr3R_6_21535001 chr3R_21535001 RAL-138 2143 chr3R 21608981 21609040 chr3R 21611640 21611644 NOF 27 2648 6.5 11.0 8.8 2.8 2663 chr3R 21608981 intron InR - chr3R 21610312 intron InR - chr3R 21611644 intron InR - chr3R_27_21610001 chr3R_21610001 RAL-138 2144 chr3R 21624078 21624121 chr3R 21624197 21624240 28 119 6.0 5.5 5.8 4.1 162 chr3R 21624078 exon E2f - chr3R 21624159 intron E2f - chr3R 21624240 intron E2f - chr3R_28_21620001 chr3R_21620001 RAL-138 2145 chr3R 21652745 21652783 chr3R 21652858 21652895 16 112 0.0 5.0 2.5 4.6 150 chr3R 21652745 intron E2f - chr3R 21652820 intron E2f - chr3R 21652895 intron E2f - chr3R_16_21650001 chr3R_21650001 RAL-138 2146 chr3R 21659592 21659607 chr3R 21659707 21659722 4 115 2.0 2.0 2.0 1.3 130 chr3R 21659592 intron E2f - chr3R 21659657 intron E2f - chr3R 21659722 intron E2f - chr3R_4_21655001 chr3R_21655001 RAL-138 2147 chr3R 21672713 21672728 chr3R 21672824 21672839 12 111 11.0 11.5 11.2 1.0 126 chr3R 21672713 3` UTR CG31176 - chr3R 21672776 3` UTR CG31176 - chr3R 21672839 3` UTR CG31176 - chr3R_12_21670001 chr3R_21670001 RAL-138 2148 chr3R 21725653 21725685 chr3R 21725814 21725846 9 161 0.0 6.5 3.2 2.1 193 chr3R 21725653 intergenic not near genes chr3R 21725750 intergenic not near genes chr3R 21725846 intergenic not near genes chr3R_9_21725001 chr3R_21725001 RAL-138 2149 chr3R 21757991 21758019 chr3R 21758256 21758265 4 260 0.0 2.0 1.0 2.0 274 chr3R 21757991 intergenic CG31198 + chr3R 21758128 intergenic CG31198 + chr3R 21758265 intergenic CG42335 + chr3R_4_21755001 chr3R_21755001 RAL-138 2150 chr3R 21760419 21760473 chr3R 21760767 21760821 9 341 0.0 2.0 1.0 4.5 402 chr3R 21760419 intron CG42335 + chr3R 21760620 exon CG42335 + chr3R 21760821 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-138 2151 chr3R 21761105 21761151 chr3R 21768513 21768567 mdg1 12 7407 5.5 8.5 7.0 1.5 7462 chr3R 21761105 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768567 exon CG42335 + chr3R_12_21760001 chr3R_21760001 RAL-138 2152 chr3R 21792190 21792247 chr3R 21792294 21792351 42 103 13.0 6.0 9.5 4.0 161 chr3R 21792190 intron CASK - chr3R 21792270 intron CASK - chr3R 21792351 intron CASK - chr3R_42_21790001 chr3R_21790001 RAL-138 2153 chr3R 21801533 21801570 chr3R 21801667 21801704 11 133 3.0 6.5 4.8 1.9 171 chr3R 21801533 intron CASK - chr3R 21801618 intron CASK - chr3R 21801704 intron CASK - chr3R_11_21800001 chr3R_21800001 RAL-138 2154 chr3R 21903608 21903632 chr3R 21903730 21903754 7 122 1.0 6.5 3.8 1.5 146 chr3R 21903608 intron CG6678 + chr3R 21903681 intron CG6678 + chr3R 21903754 intron CG6678 + chr3R_7_21900001 chr3R_21900001 RAL-138 2155 chr3R 4300005 4300026 chr3R 21907534 21907534 4 17607521 33.5 13.0 23.2 0.2 17607529 chr3R 4300005 3` UTR cpx + chr3R 13103770 intron timeout + chr3R 21907534 intergenic CG6678 + chr3R_4_13100001 chr3R_13100001 RAL-138 2156 chr3R 6308116 6308398 chr3R 21907534 21907534 5 15599314 68.5 13.0 40.8 0.1 15599418 chr3R 6308116 exon CG31556 - chr3R 14107825 5` UTR CG12402 - chr3R 21907534 intergenic CG6678 + chr3R_5_14105001 chr3R_14105001 RAL-138 2157 chr3R 8339246 8339247 chr3R 21907534 21907534 9 13568288 16.0 13.0 14.5 0.6 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-138 2158 chr3R 9620955 9620957 chr3R 21907534 21907534 4 12286578 17.5 13.0 15.2 0.2 12286579 chr3R 9620955 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-138 2159 chr3R 12312051 12312263 chr3R 21907534 21907534 4 9595380 28.0 13.0 20.5 0.2 9595483 chr3R 12312051 exon CG4066 + chr3R 17109792 intron cher - chr3R 21907534 intergenic CG6678 + chr3R_4_17105001 chr3R_17105001 RAL-138 2160 chr3R 15286984 15286989 chr3R 21907534 21907534 8 6620546 15.5 13.0 14.2 0.5 6620550 chr3R 15286984 intron Tm1 + chr3R 18597259 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_8_18595001 chr3R_18595001 RAL-138 2161 chr3R 17389054 17389054 chr3R 21907534 21907534 9 4518480 18.5 13.0 15.8 0.5 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_9_19645001 chr3R_19645001 RAL-138 2162 chr3R 21337428 21337429 chr3R 21907534 21907534 9 570105 16.5 13.0 14.8 0.6 570106 chr3R 21337428 intron CG16791 - chr3R 21622481 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_9_21620001 chr3R_21620001 RAL-138 2163 chr3R 21907534 21907534 chr3R 26659332 26659337 14 4751800 11.0 30.0 20.5 0.7 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_14_24280001 chr3R_24280001 RAL-138 2164 chr3R 21907534 21907534 chr3R 27499993 27499997 4 5592461 11.0 23.0 17.0 0.2 5592463 chr3R 21907534 intergenic CG6678 + chr3R 24703766 intron slo + chr3R 27499997 intergenic not near genes chr3R_4_24700001 chr3R_24700001 RAL-138 2165 chr3R 21907534 21907534 chr3R 28831801 28831819 46 6924268 11.0 33.0 22.0 2.0 6924285 chr3R 21907534 intergenic CG6678 + chr3R 25369676 intron Fur1 - chr3R 28831819 5` UTR WASp - chr3R_46_25365001 chr3R_25365001 RAL-138 2166 chr3R 21907534 21907534 chr3R 29013340 29013340 4 7105806 11.0 15.5 13.2 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-138 2167 chr3R 5213415 5213483 chr3R 21907535 21907535 4 16694070 25.0 13.0 19.0 0.2 16694120 chr3R 5213415 intron cno - chr3R 13560475 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_13560001 chr3R_13560001 RAL-138 2168 chr3R 6307856 6308095 chr3R 21907535 21907535 5 15599579 63.5 13.0 38.2 0.1 15599679 chr3R 6307856 exon CG31556 - chr3R 14107696 intron CG12402 - chr3R 21907535 intergenic CG6678 + chr3R_5_14105001 chr3R_14105001 RAL-138 2169 chr3R 6308188 6308397 chr3R 21907535 21907535 5 15599230 69.5 13.0 41.2 0.1 15599347 chr3R 6308188 exon CG31556 - chr3R 14107862 5` UTR CG12402 - chr3R 21907535 intergenic CG6678 + chr3R_5_14105001 chr3R_14105001 RAL-138 2170 chr3R 6308867 6308962 chr3R 21907535 21907535 5 15598635 30.5 13.0 21.8 0.2 15598668 chr3R 6308867 exon CG31556 - chr3R 14108201 5` UTR CG12402 - chr3R 21907535 intergenic CG6678 + chr3R_5_14105001 chr3R_14105001 RAL-138 2171 chr3R 8339246 8339247 chr3R 21907535 21907535 13 13568288 16.0 13.0 14.5 0.8 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-138 2172 chr3R 9358877 9359147 chr3R 21907535 21907535 5 12548547 18.5 13.0 15.8 0.3 12548658 chr3R 9358877 3` UTR,3` UTR CG45050 +,CG43675 + chr3R 15633206 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15630001 chr3R_15630001 RAL-138 2173 chr3R 9620954 9620957 chr3R 21907535 21907535 8 12286579 17.5 13.0 15.2 0.5 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-138 2174 chr3R 12312043 12312072 chr3R 21907535 21907535 5 9595473 42.5 13.0 27.8 0.2 9595492 chr3R 12312043 exon CG4066 + chr3R 17109789 intron cher - chr3R 21907535 intergenic CG6678 + chr3R_5_17105001 chr3R_17105001 RAL-138 2175 chr3R 15286983 15287021 chr3R 21907535 21907535 13 6620545 15.5 13.0 14.2 0.9 6620552 chr3R 15286983 intron Tm1 + chr3R 18597259 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_13_18595001 chr3R_18595001 RAL-138 2176 chr3R 16637293 16637466 chr3R 21907535 21907535 4 5270180 24.0 13.0 18.5 0.2 5270242 chr3R 16637293 intron Fas1 + chr3R 19272414 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_19270001 chr3R_19270001 RAL-138 2177 chr3R 17362779 17362990 chr3R 21907535 21907535 4 4544696 21.5 13.0 17.2 0.2 4544756 chr3R 17362779 intron beat-IIa - chr3R 19635157 intron,exon subdued -,CG34138 + chr3R 21907535 intergenic CG6678 + chr3R_4_19635001 chr3R_19635001 RAL-138 2178 chr3R 17389054 17389054 chr3R 21907535 21907535 10 4518481 18.5 13.0 15.8 0.6 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_10_19645001 chr3R_19645001 RAL-138 2179 chr3R 19457915 19457920 chr3R 21907535 21907535 8 2449619 7.0 13.0 10.0 0.7 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_8_20680001 chr3R_20680001 RAL-138 2180 chr3R 21337429 21337429 chr3R 21907535 21907535 6 570106 16.5 13.0 14.8 0.4 570106 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907535 intergenic CG6678 + chr3R_6_21620001 chr3R_21620001 RAL-138 2181 chr3R 21907535 21907535 chr3R 25710622 25710854 4 3803234 10.5 29.0 19.8 0.2 3803319 chr3R 21907535 intergenic CG6678 + chr3R 23809194 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 25710854 intron LpR2 - chr3R_4_23805001 chr3R_23805001 RAL-138 2182 chr3R 21907535 21907535 chr3R 26659332 26659337 20 4751800 10.5 30.0 20.2 0.9 4751802 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_20_24280001 chr3R_24280001 RAL-138 2183 chr3R 21907535 21907535 chr3R 28831801 28831810 85 6924267 10.5 33.0 21.8 3.7 6924275 chr3R 21907535 intergenic CG6678 + chr3R 25369672 intron Fur1 - chr3R 28831810 intron WASp - chr3R_85_25365001 chr3R_25365001 RAL-138 2184 chr3R 21907535 21907535 chr3R 29013339 29013340 11 7105804 10.5 15.0 12.8 0.8 7105805 chr3R 21907535 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_11_25460001 chr3R_25460001 RAL-138 2185 chr3R 6308009 6308277 chr3R 21907536 21907536 6 15599360 80.5 13.0 46.8 0.1 15599527 chr3R 6308009 exon CG31556 - chr3R 14107772 exon CG12402 - chr3R 21907536 intergenic CG6678 + chr3R_6_14105001 chr3R_14105001 RAL-138 2186 chr3R 9620954 9621014 chr3R 21907536 21907536 7 12286572 20.5 13.0 16.8 0.4 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-138 2187 chr3R 12311732 12311895 chr3R 21907536 21907536 6 9595726 52.5 13.0 32.8 0.2 9595804 chr3R 12311732 exon CG4066 + chr3R 17109634 intron cher - chr3R 21907536 intergenic CG6678 + chr3R_6_17105001 chr3R_17105001 RAL-138 2188 chr3R 12312063 12312214 chr3R 21907536 21907536 4 9595378 29.5 13.0 21.2 0.2 9595473 chr3R 12312063 exon CG4066 + chr3R 17109800 intron cher - chr3R 21907536 intergenic CG6678 + chr3R_4_17105001 chr3R_17105001 RAL-138 2189 chr3R 13693026 13693030 chr3R 21907536 21907536 4 8214508 26.0 13.0 19.5 0.2 8214510 chr3R 13693026 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-138 2190 chr3R 17389054 17389054 chr3R 21907536 21907536 5 4518482 18.5 13.0 15.8 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-138 2191 chr3R 20177845 20177845 chr3R 21907536 21907536 4 1729691 6.0 13.0 9.5 0.4 1729691 chr3R 20177845 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907536 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-138 2192 chr3R 21907536 21907536 chr3R 24180994 24181022 4 2273469 10.0 30.5 20.2 0.2 2273486 chr3R 21907536 intergenic CG6678 + chr3R 23044279 exon CG13837 + chr3R 24181022 intron CG13606 + chr3R_4_23040001 chr3R_23040001 RAL-138 2193 chr3R 21907536 21907536 chr3R 25710730 25710891 4 3803307 10.0 33.5 21.8 0.2 3803355 chr3R 21907536 intergenic CG6678 + chr3R 23809214 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 25710891 intron LpR2 - chr3R_4_23805001 chr3R_23805001 RAL-138 2194 chr3R 21907536 21907536 chr3R 26659332 26659337 11 4751798 10.0 30.0 20.0 0.5 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_11_24280001 chr3R_24280001 RAL-138 2195 chr3R 21907536 21907536 chr3R 27663860 27664057 4 5756461 10.0 16.0 13.0 0.3 5756521 chr3R 21907536 intergenic CG6678 + chr3R 24785796 exon CG5805 - chr3R 27664057 intron unc80 + chr3R_4_24785001 chr3R_24785001 RAL-138 2196 chr3R 21907536 21907536 chr3R 28831801 28831817 72 6924266 10.0 33.0 21.5 3.2 6924281 chr3R 21907536 intergenic CG6678 + chr3R 25369676 intron Fur1 - chr3R 28831817 5` UTR WASp - chr3R_72_25365001 chr3R_25365001 RAL-138 2197 chr3R 21907536 21907536 chr3R 29013339 29013340 9 7105804 10.0 15.0 12.5 0.7 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_9_25460001 chr3R_25460001 RAL-138 2198 chr3R 21925619 21925648 chr3R 21925724 21925738 4 102 5.0 5.0 5.0 0.7 119 chr3R 21925619 intergenic not near genes chr3R 21925678 intergenic not near genes chr3R 21925738 intergenic not near genes chr3R_4_21925001 chr3R_21925001 RAL-138 2199 chr3R 22016073 22016084 chr3R 22016163 22016168 6 95 7.5 0.0 3.8 1.2 95 chr3R 22016073 exon CG6332 + chr3R 22016120 3` UTR CG6332 + chr3R 22016168 3` UTR CG6332 + chr3R_6_22015001 chr3R_22015001 RAL-138 2200 chr3R 22016085 22016093 chr3R 22016160 22016196 4 91 4.5 0.0 2.2 1.2 111 chr3R 22016085 exon CG6332 + chr3R 22016140 3` UTR CG6332 + chr3R 22016196 3` UTR CG6332 + chr3R_4_22015001 chr3R_22015001 RAL-138 2201 chr3R 22084595 22084630 chr3R 22084708 22084742 13 114 3.0 6.0 4.5 2.4 147 chr3R 22084595 intergenic not near genes chr3R 22084668 intergenic not near genes chr3R 22084742 intergenic not near genes chr3R_13_22080001 chr3R_22080001 RAL-138 2202 chr3R 22117391 22117446 chr3R 22117491 22117547 10 101 1.0 0.5 0.8 5.6 156 chr3R 22117391 intergenic Ir94b -,Ir94c - chr3R 22117469 intergenic Ir94c -,Ir94b - chr3R 22117547 intergenic Ir94c -,Ir94b - chr3R_10_22115001 chr3R_22115001 RAL-138 2203 chr3R 22149733 22149768 chr3R 22149827 22149850 6 86 2.5 10.5 6.5 0.8 117 chr3R 22149733 intron SKIP + chr3R 22149792 intron SKIP + chr3R 22149850 intron SKIP + chr3R_6_22145001 chr3R_22145001 RAL-138 2204 chr3R 22209751 22209786 chr3R 22209868 22209922 4 131 0.5 2.0 1.2 1.8 171 chr3R 22209751 intron SKIP + chr3R 22209836 intron SKIP + chr3R 22209922 intron SKIP + chr3R_4_22205001 chr3R_22205001 RAL-138 2205 chr3R 22226071 22226125 chr3R 22226236 22226280 8 161 3.0 1.0 2.0 2.7 209 chr3R 22226071 intron SKIP + chr3R 22226176 intron SKIP + chr3R 22226280 intron SKIP + chr3R_8_22225001 chr3R_22225001 RAL-138 2206 chr3R 22234669 22234707 chr3R 22236013 22236051 pogo 4 1344 1.0 2.5 1.8 1.4 1382 chr3R 22234669 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236051 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-138 2207 chr3R 22239470 22239517 chr3R 22248555 22248590 roo 7 9081 1.5 1.0 1.2 3.2 9120 chr3R 22239470 intron SKIP + chr3R 22244030 intron SKIP + chr3R 22248590 intron SKIP + chr3R_7_22240001 chr3R_22240001 RAL-138 2208 chr3R 22338881 22338889 chr3R 22339076 22339084 7 195 9.5 4.0 6.8 0.9 203 chr3R 22338881 intron CG5388 - chr3R 22338982 intron CG5388 - chr3R 22339084 intron CG5388 - chr3R_7_22335001 chr3R_22335001 RAL-138 2209 chr3R 22345041 22345069 chr3R 22345382 22345410 6 341 1.0 1.0 1.0 3.0 369 chr3R 22345041 intergenic not near genes chr3R 22345226 intergenic not near genes chr3R 22345410 intergenic not near genes chr3R_6_22345001 chr3R_22345001 RAL-138 2210 chr3R 22346157 22346211 chr3R 22346268 22346319 6 110 3.5 1.0 2.2 1.9 162 chr3R 22346157 intergenic not near genes chr3R 22346238 intergenic not near genes chr3R 22346319 intergenic not near genes chr3R_6_22345001 chr3R_22345001 RAL-138 2211 chr3R 22347959 22347975 chr3R 22348067 22348083 6 108 2.5 6.0 4.2 1.2 124 chr3R 22347959 intergenic not near genes chr3R 22348021 intergenic not near genes chr3R 22348083 intergenic not near genes chr3R_6_22345001 chr3R_22345001 RAL-138 2212 chr3R 22368925 22368959 chr3R 22369053 22369087 7 128 0.0 6.0 3.0 1.8 162 chr3R 22368925 intron PyK + chr3R 22369006 intron PyK + chr3R 22369087 intron PyK + chr3R_7_22365001 chr3R_22365001 RAL-138 2213 chr3R 22433077 22433097 chr3R 22433192 22433222 6 123 4.5 5.5 5.0 1.0 145 chr3R 22433077 intron CG13847 - chr3R 22433150 intron CG13847 - chr3R 22433222 intron CG13847 - chr3R_6_22430001 chr3R_22430001 RAL-138 2214 chr3R 22437767 22437824 chr3R 22437882 22437919 19 110 0.5 1.5 1.0 9.5 152 chr3R 22437767 intergenic not near genes chr3R 22437843 intergenic not near genes chr3R 22437919 intergenic not near genes chr3R_19_22435001 chr3R_22435001 RAL-138 2215 chr3R 22450523 22450572 chr3R 22453184 22453209 NOF 13 2659 9.0 4.0 6.5 1.7 2686 chr3R 22450523 intron CG34376 + chr3R 22451866 intron CG34376 + chr3R 22453209 intron CG34376 + chr3R_13_22450001 chr3R_22450001 RAL-138 2216 chr3R 22526284 22526320 chr3R 22526390 22526426 11 106 6.0 6.0 6.0 1.6 142 chr3R 22526284 intron CG5346 - chr3R 22526355 intron CG5346 - chr3R 22526426 intron CG5346 - chr3R_11_22525001 chr3R_22525001 RAL-138 2217 chr3R 22564555 22564581 chr3R 22564671 22564683 4 113 3.5 5.0 4.2 0.8 128 chr3R 22564555 intergenic not near genes chr3R 22564619 intergenic not near genes chr3R 22564683 intergenic not near genes chr3R_4_22560001 chr3R_22560001 RAL-138 2218 chr3R 22648312 22648347 chr3R 22648412 22648446 12 103 2.0 0.0 1.0 6.0 134 chr3R 22648312 intron wake + chr3R 22648379 intron wake + chr3R 22648446 intron wake + chr3R_12_22645001 chr3R_22645001 RAL-138 2219 chr3R 22657757 22657802 chr3R 22657861 22657888 19 102 12.0 7.5 9.8 1.8 131 chr3R 22657757 intron wake + chr3R 22657822 intron wake + chr3R 22657888 intron wake + chr3R_19_22655001 chr3R_22655001 RAL-138 2220 chr3R 22769068 22769110 chr3R 22769170 22769212 4 100 3.5 3.5 3.5 0.9 144 chr3R 22769068 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769140 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769212 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_4_22765001 chr3R_22765001 RAL-138 2221 chr3R 22769119 22769125 chr3R 22769206 22769219 5 97 1.5 10.0 5.8 0.7 100 chr3R 22769119 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769169 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769219 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_5_22765001 chr3R_22765001 RAL-138 2222 chr3R 22772152 22772208 chr3R 22772294 22772350 26 142 5.0 4.5 4.8 4.5 198 chr3R 22772152 intron,intron CG7029 +,Usp12-46 + chr3R 22772251 intron,intron CG7029 +,Usp12-46 + chr3R 22772350 intron,intron CG7029 +,Usp12-46 + chr3R_26_22770001 chr3R_22770001 RAL-138 2223 chr3R 22825490 22825526 chr3R 22825603 22825640 6 113 2.0 0.0 1.0 3.0 150 chr3R 22825490 3` UTR CR44350 - chr3R 22825565 3` UTR CR44350 - chr3R 22825640 3` UTR CR44350 - chr3R_6_22825001 chr3R_22825001 RAL-138 2224 chr3R 22827418 22827438 chr3R 22827487 22827503 7 85 1.0 2.5 1.8 2.5 85 chr3R 22827418 intergenic CR44350 - chr3R 22827460 intergenic CR44350 - chr3R 22827503 intergenic CR44350 - chr3R_7_22825001 chr3R_22825001 RAL-138 2225 chr3R 22867309 22867342 chr3R 22867401 22867444 12 100 3.0 7.0 5.0 2.0 135 chr3R 22867309 intergenic not near genes chr3R 22867376 intergenic not near genes chr3R 22867444 intergenic not near genes chr3R_12_22865001 chr3R_22865001 RAL-138 2226 chr3R 22871416 22871455 chr3R 22871540 22871578 5 124 4.5 2.0 3.2 1.2 162 chr3R 22871416 intergenic not near genes chr3R 22871497 intergenic not near genes chr3R 22871578 intergenic not near genes chr3R_5_22870001 chr3R_22870001 RAL-138 2227 chr3R 22951957 22951966 chr3R 22952059 22952068 4 102 3.5 6.5 5.0 0.7 111 chr3R 22951957 intron klg + chr3R 22952012 intron klg + chr3R 22952068 intron klg + chr3R_4_22950001 chr3R_22950001 RAL-138 2228 chr3R 22954483 22954530 chr3R 22954610 22954657 20 124 4.0 5.5 4.8 3.4 174 chr3R 22954483 intron klg + chr3R 22954570 intron klg + chr3R 22954657 intron klg + chr3R_20_22950001 chr3R_22950001 RAL-138 2229 chr3R 23001614 23001618 chr3R 23001722 23001744 8 124 12.5 5.0 8.8 0.8 130 chr3R 23001614 intron CG34375 - chr3R 23001679 intron CG34375 - chr3R 23001744 intron CG34375 - chr3R_8_23000001 chr3R_23000001 RAL-138 2230 chr3R 23001624 23001631 chr3R 23001750 23001757 7 126 9.5 12.0 10.8 0.6 133 chr3R 23001624 intron CG34375 - chr3R 23001690 intron CG34375 - chr3R 23001757 intron CG34375 - chr3R_7_23000001 chr3R_23000001 RAL-138 2231 chr3R 23001633 23001647 chr3R 23001743 23001773 9 124 5.0 10.0 7.5 1.1 140 chr3R 23001633 intron CG34375 - chr3R 23001703 intron CG34375 - chr3R 23001773 intron CG34375 - chr3R_9_23000001 chr3R_23000001 RAL-138 2232 chr3R 23043189 23043217 chr3R 23043329 23043357 7 140 10.0 7.5 8.8 0.7 168 chr3R 23043189 intergenic not near genes chr3R 23043273 intergenic not near genes chr3R 23043357 intergenic not near genes chr3R_7_23040001 chr3R_23040001 RAL-138 2233 chr3R 23043229 23043235 chr3R 23043362 23043375 4 138 7.5 17.5 12.5 0.3 146 chr3R 23043229 intergenic not near genes chr3R 23043302 intergenic not near genes chr3R 23043375 intergenic not near genes chr3R_4_23040001 chr3R_23040001 RAL-138 2234 chr3R 23057835 23057836 chr3R 23057943 23057944 4 108 2.5 0.0 1.2 1.8 109 chr3R 23057835 intron CG17119 - chr3R 23057890 intron CG17119 - chr3R 23057944 intron CG17119 - chr3R_4_23055001 chr3R_23055001 RAL-138 2235 chr3R 23073635 23073682 chr3R 23073744 23073795 15 108 2.5 2.0 2.2 4.7 160 chr3R 23073635 intron CG13830 - chr3R 23073715 intron CG13830 - chr3R 23073795 intron CG13830 - chr3R_15_23070001 chr3R_23070001 RAL-138 2236 chr3R 23073683 23073689 chr3R 23073743 23073802 6 105 2.5 1.5 2.0 2.0 119 chr3R 23073683 intron CG13830 - chr3R 23073742 intron CG13830 - chr3R 23073802 intron CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-138 2237 chr3R 23090377 23090430 chr3R 23090485 23090507 14 106 3.0 5.0 4.0 2.8 130 chr3R 23090377 intron CG13830 - chr3R 23090442 intron CG13830 - chr3R 23090507 intron CG13830 - chr3R_14_23090001 chr3R_23090001 RAL-138 2238 chr3R 23100131 23100174 chr3R 23100242 23100284 5 108 3.5 2.0 2.8 1.3 153 chr3R 23100131 intron,exon CG13830 -,CG6738 + chr3R 23100208 intron,exon CG13830 -,CG6738 + chr3R 23100284 intron,exon CG13830 -,CG6738 + chr3R_5_23100001 chr3R_23100001 RAL-138 2239 chr3R 23100392 23100439 chr3R 23100498 23100528 6 98 3.5 7.0 5.2 1.0 136 chr3R 23100392 intron,exon CG13830 -,CG6738 + chr3R 23100460 intron,exon CG13830 -,CG6738 + chr3R 23100528 intron,exon CG13830 -,CG6738 + chr3R_6_23100001 chr3R_23100001 RAL-138 2240 chr3R 23107679 23107732 chr3R 23107780 23107832 18 100 6.5 6.5 6.5 2.4 153 chr3R 23107679 intron CG13830 - chr3R 23107756 intron CG13830 - chr3R 23107832 intron CG13830 - chr3R_18_23105001 chr3R_23105001 RAL-138 2241 chr3R 23182666 23182705 chr3R 23182772 23182813 8 108 2.5 3.5 3.0 2.0 147 chr3R 23182666 intron Irk1 + chr3R 23182740 intron Irk1 + chr3R 23182813 intron Irk1 + chr3R_8_23180001 chr3R_23180001 RAL-138 2242 chr3R 23211962 23211992 chr3R 23212065 23212095 9 102 2.5 6.5 4.5 1.6 133 chr3R 23211962 intron cnc - chr3R 23212028 intron cnc - chr3R 23212095 intron cnc - chr3R_9_23210001 chr3R_23210001 RAL-138 2243 chr3R 23214220 23214251 chr3R 23214329 23214356 11 110 5.5 5.0 5.2 1.8 136 chr3R 23214220 intron cnc - chr3R 23214288 intron cnc - chr3R 23214356 intron cnc - chr3R_11_23210001 chr3R_23210001 RAL-138 2244 chr3R 23338255 23338266 chr3R 23338366 23338377 4 109 3.5 6.5 5.0 0.7 122 chr3R 23338255 intron pnt - chr3R 23338316 intron pnt - chr3R 23338377 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-138 2245 chr3R 23358401 23358452 chr3R 23358514 23358565 13 113 0.0 6.0 3.0 3.2 164 chr3R 23358401 3` UTR Sec13 + chr3R 23358483 3` UTR Sec13 + chr3R 23358565 intergenic Sec13 +,RpS3 + chr3R_13_23355001 chr3R_23355001 RAL-138 2246 chr3R 23360174 23360194 chr3R 23360275 23360292 4 100 0.0 5.5 2.8 1.1 118 chr3R 23360174 3` UTR RpS3 + chr3R 23360233 intergenic RpS3 + chr3R 23360292 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-138 2247 chr3R 23543280 23543333 chr3R 23543382 23543434 5 102 2.0 0.0 1.0 2.5 154 chr3R 23543280 intergenic not near genes chr3R 23543357 intergenic not near genes chr3R 23543434 intergenic not near genes chr3R_5_23540001 chr3R_23540001 RAL-138 2248 chr3R 23556290 23556340 chr3R 23556417 23556450 8 120 1.5 1.0 1.2 3.6 160 chr3R 23556290 5` UTR CG10164 - chr3R 23556370 5` UTR CG10164 - chr3R 23556450 5` UTR CG10164 - chr3R_8_23555001 chr3R_23555001 RAL-138 2249 chr3R 23598878 23598892 chr3R 23598954 23598961 5 77 0.5 5.5 3.0 1.2 83 chr3R 23598878 exon CG10183 - chr3R 23598920 exon CG10183 - chr3R 23598961 exon CG10183 - chr3R_5_23595001 chr3R_23595001 RAL-138 2250 chr3R 23629796 23629851 chr3R 23629899 23629954 15 94 4.0 5.0 4.5 2.7 158 chr3R 23629796 intron CG31145 - chr3R 23629875 intron CG31145 - chr3R 23629954 intron CG31145 - chr3R_15_23625001 chr3R_23625001 RAL-138 2251 chr3R 23667454 23667463 chr3R 23667563 23667583 4 118 8.0 3.0 5.5 0.6 129 chr3R 23667454 intron CG31145 - chr3R 23667518 intron CG31145 - chr3R 23667583 intron CG31145 - chr3R_4_23665001 chr3R_23665001 RAL-138 2252 chr3R 23668955 23668958 chr3R 23669058 23669061 4 103 3.0 2.5 2.8 1.1 106 chr3R 23668955 intron CG31145 - chr3R 23669008 intron CG31145 - chr3R 23669061 intron CG31145 - chr3R_4_23665001 chr3R_23665001 RAL-138 2253 chr3R 23684676 23684683 chr3R 23685186 23685192 roo 4 509 17.0 9.0 13.0 0.3 516 chr3R 23684676 exon CG18754 + chr3R 23684934 intron CG18754 + chr3R 23685192 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-138 2254 chr3R 23684696 23684710 chr3R 23685189 23685221 roo 4 502 10.5 10.5 10.5 0.3 525 chr3R 23684696 exon CG18754 + chr3R 23684958 intron CG18754 + chr3R 23685221 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-138 2255 chr3R 23684712 23684724 chr3R 23685188 23685204 roo 6 500 7.0 9.5 8.2 0.7 492 chr3R 23684712 intron CG18754 + chr3R 23684958 intron CG18754 + chr3R 23685204 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-138 2256 chr3R 23784875 23784915 chr3R 23784976 23785016 9 101 3.0 5.0 4.0 1.8 141 chr3R 23784875 intron mbc + chr3R 23784946 intron mbc + chr3R 23785016 intron mbc + chr3R_9_23780001 chr3R_23780001 RAL-138 2257 chr3R 23787491 23787523 chr3R 23787595 23787627 10 104 6.0 3.5 4.8 1.7 136 chr3R 23787491 intron mbc + chr3R 23787559 intron mbc + chr3R 23787627 intron mbc + chr3R_10_23785001 chr3R_23785001 RAL-138 2258 chr3R 23893774 23893811 chr3R 23893886 23893940 15 120 3.5 7.0 5.2 2.4 166 chr3R 23893774 intergenic tbrd-1 -,sba - chr3R 23893857 intergenic sba -,tbrd-1 - chr3R 23893940 intergenic sba - chr3R_15_23890001 chr3R_23890001 RAL-138 2259 chr3R 23962444 23962492 chr3R 23962577 23962626 37 132 6.0 6.0 6.0 5.3 182 chr3R 23962444 3` UTR AP-1sigma + chr3R 23962535 3` UTR AP-1sigma + chr3R 23962626 intergenic AP-1sigma + chr3R_37_23960001 chr3R_23960001 RAL-138 2260 chr3R 24011644 24011668 chr3R 24011752 24011776 14 108 10.5 11.0 10.8 1.2 132 chr3R 24011644 intron KrT95D - chr3R 24011710 intron KrT95D - chr3R 24011776 intron KrT95D - chr3R_14_24010001 chr3R_24010001 RAL-138 2261 chr3R 24053669 24053716 chr3R 24053896 24053947 16 228 4.5 13.0 8.8 1.6 278 chr3R 24053669 intergenic CG5991 + chr3R 24053808 intergenic CG5991 + chr3R 24053947 intergenic CG5991 +,CG6000 +,CR44097 + chr3R_16_24050001 chr3R_24050001 RAL-138 2262 chr3R 24072078 24072106 chr3R 24072523 24072565 jockey 11 455 6.5 6.5 6.5 1.5 487 chr3R 24072078 intron 4EHP - chr3R 24072322 intron 4EHP - chr3R 24072565 intron 4EHP - chr3R_11_24070001 chr3R_24070001 RAL-138 2263 chr3R 24074545 24074590 chr3R 24074645 24074691 15 101 6.5 6.5 6.5 2.0 146 chr3R 24074545 intron 4EHP - chr3R 24074618 intron 4EHP - chr3R 24074691 intron 4EHP - chr3R_15_24070001 chr3R_24070001 RAL-138 2264 chr3R 24076902 24076943 chr3R 24078393 24078428 hobo 5 1488 3.5 4.5 4.0 1.0 1526 chr3R 24076902 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078428 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-138 2265 chr3R 24080099 24080138 chr3R 24080203 24080242 10 104 3.0 3.5 3.2 2.4 143 chr3R 24080099 intron 4EHP - chr3R 24080170 intron 4EHP - chr3R 24080242 intron 4EHP - chr3R_10_24080001 chr3R_24080001 RAL-138 2266 chr3R 24100846 24100879 chr3R 24101004 24101021 7 160 0.5 2.5 1.5 2.8 175 chr3R 24100846 intron 4EHP - chr3R 24100934 intron 4EHP - chr3R 24101021 intron 4EHP - chr3R_7_24100001 chr3R_24100001 RAL-138 2267 chr3R 24163628 24163643 chr3R 24163739 24163755 9 112 0.0 4.0 2.0 3.0 127 chr3R 24163628 intergenic mRpS24 -,Apc2 +,CG6182 + chr3R 24163692 intergenic mRpS24 -,Apc2 +,CG6182 + chr3R 24163755 intergenic mRpS24 -,Apc2 + chr3R_9_24160001 chr3R_24160001 RAL-138 2268 chr3R 24200287 24200311 chr3R 24200387 24200412 11 99 10.5 11.5 11.0 0.9 125 chr3R 24200287 intron twin - chr3R 24200350 intron twin - chr3R 24200412 intron twin - chr3R_11_24200001 chr3R_24200001 RAL-138 2269 chr3R 24214028 24214078 chr3R 24214134 24214144 11 90 8.5 4.5 6.5 1.5 116 chr3R 24214028 intron twin - chr3R 24214086 intron twin - chr3R 24214144 intron twin - chr3R_11_24210001 chr3R_24210001 RAL-138 2270 chr3R 24434216 24434272 chr3R 24434319 24434363 23 102 6.5 6.5 6.5 3.1 147 chr3R 24434216 intron nAChRalpha1 - chr3R 24434290 intron nAChRalpha1 - chr3R 24434363 intron nAChRalpha1 - chr3R_23_24430001 chr3R_24430001 RAL-138 2271 chr3R 24493273 24493303 chr3R 24493527 24493557 BS 8 254 3.0 6.0 4.5 1.5 284 chr3R 24493273 intergenic not near genes chr3R 24493415 intergenic not near genes chr3R 24493557 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-138 2272 chr3R 24524838 24524867 chr3R 24524936 24524962 6 96 2.5 2.0 2.2 1.9 124 chr3R 24524838 5` UTR CG13618 + chr3R 24524900 5` UTR CG13618 + chr3R 24524962 5` UTR CG13618 + chr3R_6_24520001 chr3R_24520001 RAL-138 2273 chr3R 24581470 24581504 chr3R 24581576 24581610 6 106 3.0 1.5 2.2 1.9 140 chr3R 24581470 intron CG13624 - chr3R 24581540 intron CG13624 - chr3R 24581610 intron CG13624 - chr3R_6_24580001 chr3R_24580001 RAL-138 2274 chr3R 24605539 24605549 chr3R 24605651 24605662 4 110 4.0 7.5 5.8 0.6 123 chr3R 24605539 intron mld + chr3R 24605600 intron mld + chr3R 24605662 intron mld + chr3R_4_24605001 chr3R_24605001 RAL-138 2275 chr3R 24624350 24624389 chr3R 24624464 24624489 19 112 7.5 13.0 10.2 1.7 139 chr3R 24624350 intron Syx18 - chr3R 24624420 intron Syx18 - chr3R 24624489 exon Syx18 - chr3R_19_24620001 chr3R_24620001 RAL-138 2276 chr3R 24624392 24624396 chr3R 24624506 24624510 5 114 6.0 30.5 18.2 0.3 118 chr3R 24624392 intron Syx18 - chr3R 24624451 intron Syx18 - chr3R 24624510 exon Syx18 - chr3R_5_24620001 chr3R_24620001 RAL-138 2277 chr3R 24667587 24667616 chr3R 24667688 24667718 5 102 3.0 0.0 1.5 2.0 131 chr3R 24667587 intron slo + chr3R 24667652 intron slo + chr3R 24667718 intron slo + chr3R_5_24665001 chr3R_24665001 RAL-138 2278 chr3R 24714172 24714180 chr3R 24714280 24714284 4 107 8.0 3.5 5.8 0.6 112 chr3R 24714172 intron CG13627 + chr3R 24714228 intron CG13627 + chr3R 24714284 intron CG13627 + chr3R_4_24710001 chr3R_24710001 RAL-138 2279 chr3R 24714191 24714220 chr3R 24714278 24714308 18 98 3.0 2.5 2.8 4.7 117 chr3R 24714191 intron CG13627 + chr3R 24714250 intron CG13627 + chr3R 24714308 intron CG13627 + chr3R_18_24710001 chr3R_24710001 RAL-138 2280 chr3R 24730074 24730115 chr3R 24732477 24732479 Doc 4 2390 7.5 0.0 3.8 0.8 2405 chr3R 24730074 intron tok + chr3R 24731276 intron tok + chr3R 24732479 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-138 2281 chr3R 24787679 24787722 chr3R 24787798 24787840 17 119 5.0 5.0 5.0 2.8 161 chr3R 24787679 intergenic CG5805 -,Ets96B + chr3R 24787760 intergenic Ets96B +,CG5805 -,CG13634 - chr3R 24787840 intergenic Ets96B +,CG13634 -,CG5805 - chr3R_17_24785001 chr3R_24785001 RAL-138 2282 chr3R 24927104 24927146 chr3R 24931919 24931962 Doc 20 4815 6.5 5.5 6.0 2.9 4858 chr3R 24927104 intergenic Trf4-2 + chr3R 24929533 intergenic not near genes chr3R 24931962 intergenic CG11771 + chr3R_20_24925001 chr3R_24925001 RAL-138 2283 chr3R 25085212 25085248 chr3R 25085314 25085350 10 102 0.0 3.0 1.5 4.0 138 chr3R 25085212 intergenic fd96Ca + chr3R 25085281 intergenic fd96Ca + chr3R 25085350 intergenic fd96Ca + chr3R_10_25085001 chr3R_25085001 RAL-138 2284 chr3R 25126021 25126061 chr3R 25126640 25126679 4 618 40.5 31.0 35.8 0.1 658 chr3R 25126021 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126350 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126679 3` UTR,exon CG42503 -,Mocs2 - chr3R_4_25125001 chr3R_25125001 RAL-138 2285 chr3R 25137644 25137679 chr3R 25137744 25137780 27 100 14.0 10.0 12.0 2.1 136 chr3R 25137644 intergenic danr + chr3R 25137712 intergenic danr + chr3R 25137780 intergenic danr + chr3R_27_25135001 chr3R_25135001 RAL-138 2286 chr3R 25166339 25166390 chr3R 25166440 25166491 7 101 2.0 1.0 1.5 2.8 152 chr3R 25166339 intergenic not near genes chr3R 25166415 intergenic not near genes chr3R 25166491 intergenic not near genes chr3R_7_25165001 chr3R_25165001 RAL-138 2287 chr3R 25300080 25300128 chr3R 25305918 25305948 6 5823 17.0 15.5 16.2 0.3 5868 chr3R 25300080 intergenic not near genes chr3R 25303014 exon CG31370 + chr3R 25305948 intergenic CG31436 +,CG10550 - chr3R_6_25300001 chr3R_25300001 RAL-138 2288 chr3R 25410316 25410328 chr3R 25410423 25410435 4 108 6.0 4.5 5.2 0.6 119 chr3R 25410316 intron Fur1 - chr3R 25410376 intron Fur1 - chr3R 25410435 intron Fur1 - chr3R_4_25410001 chr3R_25410001 RAL-138 2289 chr3R 25410330 25410354 chr3R 25410410 25410460 5 102 4.5 3.0 3.8 1.0 130 chr3R 25410330 intron Fur1 - chr3R 25410395 intron Fur1 - chr3R 25410460 intron Fur1 - chr3R_5_25410001 chr3R_25410001 RAL-138 2290 chr3R 25520965 25520981 chr3R 25521089 25521105 10 123 8.5 10.0 9.2 1.0 140 chr3R 25520965 intron msi + chr3R 25521035 intron msi + chr3R 25521105 intron msi + chr3R_10_25520001 chr3R_25520001 RAL-138 2291 chr3R 25528016 25528039 chr3R 25528142 25528165 6 127 7.5 2.5 5.0 1.0 149 chr3R 25528016 intron msi + chr3R 25528090 intron msi + chr3R 25528165 intron msi + chr3R_6_25525001 chr3R_25525001 RAL-138 2292 chr3R 25607896 25607936 chr3R 25608002 25608042 9 106 3.0 2.0 2.5 2.6 146 chr3R 25607896 3` UTR,intron msi +,ymp - chr3R 25607969 3` UTR,intron msi +,ymp - chr3R 25608042 3` UTR,intron msi +,ymp - chr3R_9_25605001 chr3R_25605001 RAL-138 2293 chr3R 25612891 25612903 chr3R 25612993 25613005 9 102 13.0 6.5 9.8 0.8 114 chr3R 25612891 intron Npl4 - chr3R 25612948 intron Npl4 - chr3R 25613005 intron Npl4 - chr3R_9_25610001 chr3R_25610001 RAL-138 2294 chr3R 25612904 25612943 chr3R 25612987 25613043 24 100 4.0 6.0 5.0 4.0 139 chr3R 25612904 intron Npl4 - chr3R 25612974 intron Npl4 - chr3R 25613043 intron Npl4 - chr3R_24_25610001 chr3R_25610001 RAL-138 2295 chr3R 25671216 25671274 chr3R 25671339 25671399 15 122 4.0 6.0 5.0 2.5 183 chr3R 25671216 intron Lgr3 + chr3R 25671308 intron Lgr3 + chr3R 25671399 intron Lgr3 + chr3R_15_25670001 chr3R_25670001 RAL-138 2296 chr3R 25689121 25689162 chr3R 25689254 25689280 8 130 1.0 6.5 3.8 1.7 159 chr3R 25689121 intergenic not near genes chr3R 25689200 intergenic not near genes chr3R 25689280 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-138 2297 chr3R 25709585 25709644 chr3R 25709692 25709751 6 107 0.0 2.5 1.2 2.7 166 chr3R 25709585 intron LpR2 - chr3R 25709668 intron LpR2 - chr3R 25709751 intron LpR2 - chr3R_6_25705001 chr3R_25705001 RAL-138 2298 chr3R 25725814 25725831 chr3R 25734998 25735016 roo 4 9185 0.5 1.0 0.8 2.2 9202 chr3R 25725814 intron LpR2 - chr3R 25730415 intron LpR2 - chr3R 25735016 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-138 2299 chr3R 25738613 25738661 chr3R 25738726 25738774 5 105 2.0 1.5 1.8 1.8 161 chr3R 25738613 intron LpR2 - chr3R 25738694 intron LpR2 - chr3R 25738774 intron LpR2 - chr3R_5_25735001 chr3R_25735001 RAL-138 2300 chr3R 25796355 25796370 chr3R 25796458 25796474 5 104 16.5 0.0 8.2 0.5 119 chr3R 25796355 intergenic CR43847 - chr3R 25796414 intergenic CR43847 - chr3R 25796474 intergenic CR43847 - chr3R_5_25795001 chr3R_25795001 RAL-138 2301 chr3R 25832672 25832693 chr3R 25841879 25841896 roo 12 9206 14.0 10.0 12.0 0.9 9224 chr3R 25832672 exon alpha4GT2 + chr3R 25837284 intron alpha4GT2 + chr3R 25841896 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-138 2302 chr3R 25832695 25832717 chr3R 25841874 25841924 roo 9 9201 7.5 8.5 8.0 1.0 9229 chr3R 25832695 exon alpha4GT2 + chr3R 25837310 intron alpha4GT2 + chr3R 25841924 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-138 2303 chr3R 25843631 25843667 chr3R 25843786 25843822 14 155 1.0 4.0 2.5 4.0 191 chr3R 25843631 intergenic CR45653 + chr3R 25843726 intergenic CR45653 + chr3R 25843822 intergenic CR45653 + chr3R_14_25840001 chr3R_25840001 RAL-138 2304 chr3R 25869184 25869206 chr3R 25869403 25869408 7 214 7.5 3.5 5.5 1.1 224 chr3R 25869184 intron CG5890 + chr3R 25869296 intron CG5890 + chr3R 25869408 intron CG5890 + chr3R_7_25865001 chr3R_25865001 RAL-138 2305 chr3R 25869211 25869235 chr3R 25869407 25869432 8 213 3.5 4.0 3.8 1.7 221 chr3R 25869211 intron CG5890 + chr3R 25869322 intron CG5890 + chr3R 25869432 intron CG5890 + chr3R_8_25865001 chr3R_25865001 RAL-138 2306 chr3R 25982052 25982092 chr3R 25982165 25982203 7 112 8.0 1.5 4.8 1.2 151 chr3R 25982052 3` UTR CG42261 + chr3R 25982128 3` UTR CG42261 + chr3R 25982203 3` UTR CG42261 + chr3R_7_25980001 chr3R_25980001 RAL-138 2307 chr3R 25982099 25982111 chr3R 25982210 25982222 4 111 3.5 8.0 5.8 0.6 123 chr3R 25982099 3` UTR CG42261 + chr3R 25982160 3` UTR CG42261 + chr3R 25982222 3` UTR CG42261 + chr3R_4_25980001 chr3R_25980001 RAL-138 2308 chr3R 25983681 25983723 chr3R 25983792 25983845 15 119 3.5 3.5 3.5 3.3 164 chr3R 25983681 exon Nf1 + chr3R 25983763 intron Nf1 + chr3R 25983845 exon Nf1 + chr3R_15_25980001 chr3R_25980001 RAL-138 2309 chr3R 25997245 25997254 chr3R 25997357 25997366 7 112 6.5 6.0 6.2 1.0 121 chr3R 25997245 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997306 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997366 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_7_25995001 chr3R_25995001 RAL-138 2310 chr3R 26010150 26010203 chr3R 26010252 26010305 20 97 8.5 9.5 9.0 2.0 155 chr3R 26010150 intergenic not near genes chr3R 26010228 intergenic not near genes chr3R 26010305 intergenic not near genes chr3R_20_26010001 chr3R_26010001 RAL-138 2311 chr3R 26108805 26108823 chr3R 26117413 26117419 Tirant 4 8604 6.5 0.0 3.2 1.0 8614 chr3R 26108805 5` UTR CG31324 + chr3R 26113112 intron CG31324 + chr3R 26117419 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-138 2312 chr3R 26122439 26122478 chr3R 26122540 26122579 8 100 3.5 3.0 3.2 1.9 140 chr3R 26122439 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122579 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-138 2313 chr3R 26126466 26126499 chr3R 26126645 26126678 9 179 3.5 3.5 3.5 2.0 212 chr3R 26126466 intron CG31324 + chr3R 26126572 intron CG31324 + chr3R 26126678 intron,5` UTR CG31324 +,CG14556 + chr3R_9_26125001 chr3R_26125001 RAL-138 2314 chr3R 26140494 26140535 chr3R 26140632 26140645 6 133 3.5 1.0 2.2 1.9 151 chr3R 26140494 intergenic not near genes chr3R 26140570 intergenic not near genes chr3R 26140645 intergenic not near genes chr3R_6_26140001 chr3R_26140001 RAL-138 2315 chr3R 26144435 26144476 chr3R 26144536 26144579 7 102 2.5 2.5 2.5 2.0 144 chr3R 26144435 intergenic not near genes chr3R 26144507 intergenic not near genes chr3R 26144579 intergenic not near genes chr3R_7_26140001 chr3R_26140001 RAL-138 2316 chr3R 26165307 26165362 chr3R 26165434 26165489 9 122 0.0 2.0 1.0 4.5 182 chr3R 26165307 intergenic not near genes chr3R 26165398 intergenic not near genes chr3R 26165489 intergenic not near genes chr3R_9_26165001 chr3R_26165001 RAL-138 2317 chr3R 26294710 26294749 chr3R 26294793 26294852 9 101 1.0 1.0 1.0 4.5 142 chr3R 26294710 intergenic not near genes chr3R 26294781 intergenic not near genes chr3R 26294852 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-138 2318 chr3R 26332861 26332916 chr3R 26332972 26333029 24 113 2.0 5.0 3.5 5.3 168 chr3R 26332861 intron CG33970 + chr3R 26332945 intron CG33970 + chr3R 26333029 intron CG33970 + chr3R_24_26330001 chr3R_26330001 RAL-138 2319 chr3R 26340344 26340389 chr3R 26340499 26340544 9 152 1.0 1.0 1.0 4.5 200 chr3R 26340344 intron CG33970 + chr3R 26340444 intron CG33970 + chr3R 26340544 intron CG33970 + chr3R_9_26340001 chr3R_26340001 RAL-138 2320 chr3R 26370326 26370333 chr3R 26370435 26370443 5 110 0.0 2.0 1.0 2.5 117 chr3R 26370326 intergenic not near genes chr3R 26370384 intergenic not near genes chr3R 26370443 intergenic not near genes chr3R_5_26370001 chr3R_26370001 RAL-138 2321 chr3R 26374835 26374852 chr3R 26374962 26374979 4 127 0.0 5.0 2.5 1.1 144 chr3R 26374835 intergenic not near genes chr3R 26374907 intergenic not near genes chr3R 26374979 intergenic not near genes chr3R_4_26370001 chr3R_26370001 RAL-138 2322 chr3R 26376303 26376353 chr3R 26385487 26385538 roo 7 9183 3.0 3.5 3.2 1.7 9235 chr3R 26376303 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385538 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-138 2323 chr3R 26405897 26405923 chr3R 26405998 26406024 6 101 0.0 2.5 1.2 2.7 127 chr3R 26405897 intergenic not near genes chr3R 26405960 intergenic not near genes chr3R 26406024 intergenic not near genes chr3R_6_26405001 chr3R_26405001 RAL-138 2324 chr3R 26413267 26413302 chr3R 26413373 26413424 7 113 2.5 5.0 3.8 1.5 157 chr3R 26413267 intergenic not near genes chr3R 26413346 intergenic not near genes chr3R 26413424 intergenic not near genes chr3R_7_26410001 chr3R_26410001 RAL-138 2325 chr3R 26458183 26458228 chr3R 26458293 26458336 5 104 7.0 4.0 5.5 0.8 153 chr3R 26458183 intergenic CG14238 + chr3R 26458260 5` UTR CG14238 + chr3R 26458336 5` UTR CG14238 + chr3R_5_26455001 chr3R_26455001 RAL-138 2326 chr3R 26463760 26463804 chr3R 26463953 26464002 7 197 3.0 2.0 2.5 2.0 242 chr3R 26463760 intron CG5455 + chr3R 26463881 intron CG5455 + chr3R 26464002 intron CG5455 + chr3R_7_26460001 chr3R_26460001 RAL-138 2327 chr3R 26510480 26510534 chr3R 26519566 26519620 roo 5 9086 1.0 2.0 1.5 2.0 9140 chr3R 26510480 intron plum - chr3R 26515050 intron plum - chr3R 26519620 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-138 2328 chr3R 26540975 26541018 chr3R 26541079 26541122 4 104 3.0 1.5 2.2 1.2 147 chr3R 26540975 intron scrib + chr3R 26541048 intron scrib + chr3R 26541122 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-138 2329 chr3R 26558307 26558346 chr3R 26565642 26565667 Stalker4 8 7330 5.0 4.0 4.5 1.5 7360 chr3R 26558307 intron scrib + chr3R 26561987 intron scrib + chr3R 26565667 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-138 2330 chr3R 26574983 26575039 chr3R 26575085 26575143 25 102 1.0 7.0 4.0 5.0 160 chr3R 26574983 exon scrib + chr3R 26575063 intron scrib + chr3R 26575143 intron scrib + chr3R_25_26575001 chr3R_26575001 RAL-138 2331 chr3R 26641614 26641627 chr3R 26641726 26641739 5 112 7.0 5.5 6.2 0.7 125 chr3R 26641614 intergenic not near genes chr3R 26641676 intergenic not near genes chr3R 26641739 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-138 2332 chr3R 26641640 26641664 chr3R 26641748 26641776 8 108 2.0 10.5 6.2 1.1 136 chr3R 26641640 intergenic not near genes chr3R 26641708 intergenic not near genes chr3R 26641776 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-138 2333 chr3R 21907534 21907536 chr3R 26659332 26659334 6 4751798 10.0 30.0 20.0 0.3 4751800 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659334 intron beat-VII - chr3R_6_24280001 chr3R_24280001 RAL-138 2334 chr3R 26685845 26685859 chr3R 26686050 26686064 5 205 7.0 6.0 6.5 0.7 219 chr3R 26685845 intergenic not near genes chr3R 26685954 intergenic not near genes chr3R 26686064 intergenic not near genes chr3R_5_26685001 chr3R_26685001 RAL-138 2335 chr3R 26685860 26685882 chr3R 26686039 26686087 7 201 4.0 5.0 4.5 1.3 227 chr3R 26685860 intergenic not near genes chr3R 26685974 intergenic not near genes chr3R 26686087 intergenic not near genes chr3R_7_26685001 chr3R_26685001 RAL-138 2336 chr3R 26713840 26713891 chr3R 26713942 26714000 40 104 11.0 10.0 10.5 3.5 160 chr3R 26713840 5` UTR amon - chr3R 26713920 5` UTR amon - chr3R 26714000 5` UTR amon - chr3R_40_26710001 chr3R_26710001 RAL-138 2337 chr3R 26763725 26763776 chr3R 26763849 26763901 28 124 9.5 6.0 7.8 3.2 176 chr3R 26763725 intergenic not near genes chr3R 26763813 intergenic not near genes chr3R 26763901 intergenic not near genes chr3R_28_26760001 chr3R_26760001 RAL-138 2338 chr3R 26770216 26770269 chr3R 26770318 26770371 9 102 1.5 1.5 1.5 3.6 155 chr3R 26770216 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770371 intergenic not near genes chr3R_9_26770001 chr3R_26770001 RAL-138 2339 chr3R 26781779 26781788 chr3R 26781857 26781888 4 94 7.5 4.5 6.0 0.6 109 chr3R 26781779 intergenic not near genes chr3R 26781834 intergenic not near genes chr3R 26781888 intergenic not near genes chr3R_4_26780001 chr3R_26780001 RAL-138 2340 chr3R 26781789 26781804 chr3R 26781852 26781877 6 72 4.5 2.5 3.5 1.3 88 chr3R 26781789 intergenic not near genes chr3R 26781833 intergenic not near genes chr3R 26781877 intergenic not near genes chr3R_6_26780001 chr3R_26780001 RAL-138 2341 chr3R 26824623 26824641 chr3R 26825004 26825021 4 381 0.0 3.0 1.5 1.6 398 chr3R 26824623 intron Tl + chr3R 26824822 intron Tl + chr3R 26825021 intron Tl + chr3R_4_26820001 chr3R_26820001 RAL-138 2342 chr3R 26834321 26834355 chr3R 26834445 26834477 10 122 5.5 0.5 3.0 2.5 156 chr3R 26834321 intron Tl + chr3R 26834399 intron Tl + chr3R 26834477 intron Tl + chr3R_10_26830001 chr3R_26830001 RAL-138 2343 chr3R 26885673 26885716 chr3R 26885787 26885841 14 121 5.5 4.0 4.8 2.4 168 chr3R 26885673 intron T48 + chr3R 26885757 intron T48 + chr3R 26885841 intron T48 + chr3R_14_26885001 chr3R_26885001 RAL-138 2344 chr3R 26886631 26886665 chr3R 26886823 26886858 8 191 6.0 2.5 4.2 1.5 227 chr3R 26886631 intron T48 + chr3R 26886744 intron T48 + chr3R 26886858 intron T48 + chr3R_8_26885001 chr3R_26885001 RAL-138 2345 chr3R 26981070 26981098 chr3R 26981179 26981208 7 108 3.5 5.5 4.5 1.3 138 chr3R 26981070 intron CG14253 + chr3R 26981139 intron CG14253 + chr3R 26981208 intron CG14253 + chr3R_7_26980001 chr3R_26980001 RAL-138 2346 chr3R 27027660 27027693 chr3R 27027769 27027800 9 107 6.0 1.5 3.8 1.9 140 chr3R 27027660 intron RYa-R + chr3R 27027730 intron RYa-R + chr3R 27027800 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-138 2347 chr3R 27028698 27028756 chr3R 27028802 27028860 14 104 4.5 5.5 5.0 2.3 162 chr3R 27028698 intron RYa-R + chr3R 27028779 intron RYa-R + chr3R 27028860 intron RYa-R + chr3R_14_27025001 chr3R_27025001 RAL-138 2348 chr3R 27041808 27041830 chr3R 27041923 27041942 5 114 4.0 4.5 4.2 1.0 134 chr3R 27041808 intron RYa-R + chr3R 27041875 intron RYa-R + chr3R 27041942 intron RYa-R + chr3R_5_27040001 chr3R_27040001 RAL-138 2349 chr3R 27140500 27140544 chr3R 27148134 27148179 412 14 7634 4.0 6.5 5.2 2.3 7679 chr3R 27140500 intron CG6051 - chr3R 27144340 intron CG6051 - chr3R 27148179 intron CG6051 - chr3R_14_27140001 chr3R_27140001 RAL-138 2350 chr3R 27298834 27298884 chr3R 27298980 27299032 18 145 3.5 2.0 2.8 4.7 198 chr3R 27298834 intron CG3339 - chr3R 27298933 intron CG3339 - chr3R 27299032 intron CG3339 - chr3R_18_27295001 chr3R_27295001 RAL-138 2351 chr3R 27329454 27329499 chr3R 27329556 27329601 5 102 2.5 2.0 2.2 1.6 147 chr3R 27329454 intergenic CG3330 - chr3R 27329528 intergenic CG3330 - chr3R 27329601 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-138 2352 chr3R 27342775 27342821 chr3R 27351381 27351409 Tirant 17 8603 4.5 4.5 4.5 3.1 8634 chr3R 27342775 intron CG42534 + chr3R 27347092 intron CG42534 + chr3R 27351409 intron CG42534 + chr3R_17_27345001 chr3R_27345001 RAL-138 2353 chr3R 27377472 27377492 chr3R 27377565 27377605 6 98 9.0 6.5 7.8 0.7 133 chr3R 27377472 3` UTR side - chr3R 27377538 3` UTR side - chr3R 27377605 3` UTR side - chr3R_6_27375001 chr3R_27375001 RAL-138 2354 chr3R 27445228 27445255 chr3R 27445330 27445357 9 98 2.0 3.0 2.5 2.6 129 chr3R 27445228 intergenic not near genes chr3R 27445292 intergenic not near genes chr3R 27445357 intergenic not near genes chr3R_9_27445001 chr3R_27445001 RAL-138 2355 chr3R 27445260 27445269 chr3R 27445323 27445371 5 85 2.0 2.5 2.2 1.6 111 chr3R 27445260 intergenic not near genes chr3R 27445316 intergenic not near genes chr3R 27445371 intergenic not near genes chr3R_5_27445001 chr3R_27445001 RAL-138 2356 chr3R 27470856 27470915 chr3R 27470994 27471049 6 137 2.0 2.0 2.0 2.0 193 chr3R 27470856 intergenic not near genes chr3R 27470952 intergenic not near genes chr3R 27471049 intergenic not near genes chr3R_6_27470001 chr3R_27470001 RAL-138 2357 chr3R 27521137 27521179 chr3R 27530371 27530413 roo 17 9234 6.5 7.5 7.0 2.1 9276 chr3R 27521137 intron CG12885 + chr3R 27525775 intron CG12885 + chr3R 27530413 intron CG12885 + chr3R_17_27525001 chr3R_27525001 RAL-138 2358 chr3R 27627066 27627119 chr3R 27627193 27627246 21 121 6.0 3.0 4.5 3.8 180 chr3R 27627066 intron Tusp + chr3R 27627156 intron Tusp + chr3R 27627246 intron Tusp + chr3R_21_27625001 chr3R_27625001 RAL-138 2359 chr3R 27706754 27706803 chr3R 27706856 27706904 14 101 8.5 7.0 7.8 1.6 150 chr3R 27706754 intergenic CG12428 -,CG12877 + chr3R 27706829 intergenic CG12428 -,CG12877 + chr3R 27706904 intergenic CG12428 -,CG12877 + chr3R_14_27705001 chr3R_27705001 RAL-138 2360 chr3R 27725543 27725586 chr3R 27731010 27731053 I-element 12 5467 6.0 5.5 5.8 1.8 5510 chr3R 27725543 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731053 intergenic not near genes chr3R_12_27725001 chr3R_27725001 RAL-138 2361 chr3R 27789072 27789109 chr3R 27789160 27789211 6 89 1.0 4.0 2.5 1.7 139 chr3R 27789072 exon CG34353 - chr3R 27789142 intron CG34353 - chr3R 27789211 intron CG34353 - chr3R_6_27785001 chr3R_27785001 RAL-138 2362 chr3R 27799916 27799942 chr3R 27800023 27800049 6 107 4.0 3.0 3.5 1.3 133 chr3R 27799916 intron CG34353 - chr3R 27799982 intron CG34353 - chr3R 27800049 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-138 2363 chr3R 27840210 27840267 chr3R 27840370 27840425 6 156 0.0 0.0 0.0 6.0 215 chr3R 27840210 intron CG34353 - chr3R 27840318 intron CG34353 - chr3R 27840425 intron CG34353 - chr3R_6_27840001 chr3R_27840001 RAL-138 2364 chr3R 27856741 27856790 chr3R 27858241 27858297 hopper2 16 1503 7.0 2.0 4.5 2.9 1556 chr3R 27856741 intron CG34353 - chr3R 27857519 intron CG34353 - chr3R 27858297 intron CG34353 - chr3R_16_27855001 chr3R_27855001 RAL-138 2365 chr3R 27861320 27861353 chr3R 27861585 27861614 8 261 2.5 4.0 3.2 1.9 294 chr3R 27861320 intron CG34353 - chr3R 27861467 intron CG34353 - chr3R 27861614 intron CG34353 - chr3R_8_27860001 chr3R_27860001 RAL-138 2366 chr3R 27862935 27862984 chr3R 27868263 27868308 Transpac 7 5329 0.0 3.0 1.5 2.8 5373 chr3R 27862935 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868308 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-138 2367 chr3R 27875690 27875720 chr3R 27882769 27882800 297 5 7079 1.0 3.0 2.0 1.7 7110 chr3R 27875690 intron CG34353 - chr3R 27879245 intron CG34353 - chr3R 27882800 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-138 2368 chr3R 27911223 27911249 chr3R 27911326 27911352 10 103 6.0 5.5 5.8 1.5 129 chr3R 27911223 intergenic not near genes chr3R 27911288 intergenic not near genes chr3R 27911352 intergenic not near genes chr3R_10_27910001 chr3R_27910001 RAL-138 2369 chr3R 28017928 28017961 chr3R 28018042 28018076 5 115 5.0 7.0 6.0 0.7 148 chr3R 28017928 intergenic not near genes chr3R 28018002 intergenic not near genes chr3R 28018076 intergenic not near genes chr3R_5_28015001 chr3R_28015001 RAL-138 2370 chr3R 28017963 28017970 chr3R 28018038 28018062 6 101 4.5 6.5 5.5 0.9 99 chr3R 28017963 intergenic not near genes chr3R 28018012 intergenic not near genes chr3R 28018062 intergenic not near genes chr3R_6_28015001 chr3R_28015001 RAL-138 2371 chr3R 28032001 28032050 chr3R 28032103 28032138 12 91 6.5 5.0 5.8 1.8 137 chr3R 28032001 intron CG34362 + chr3R 28032070 intron CG34362 + chr3R 28032138 intron CG34362 + chr3R_12_28030001 chr3R_28030001 RAL-138 2372 chr3R 28054419 28054453 chr3R 28054520 28054520 8 94 11.5 4.0 7.8 0.9 101 chr3R 28054419 intron CG34362 + chr3R 28054470 intron CG34362 + chr3R 28054520 intron CG34362 + chr3R_8_28050001 chr3R_28050001 RAL-138 2373 chr3R 28054458 28054462 chr3R 28054525 28054563 6 95 9.5 4.0 6.8 0.8 105 chr3R 28054458 intron CG34362 + chr3R 28054510 intron CG34362 + chr3R 28054563 intron CG34362 + chr3R_6_28050001 chr3R_28050001 RAL-138 2374 chr3R 28068483 28068513 chr3R 28073950 28073980 I-element 11 5467 0.0 14.0 7.0 1.4 5497 chr3R 28068483 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073980 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-138 2375 chr3R 28068514 28068524 chr3R 28073930 28073989 I-element 7 5457 0.0 6.5 3.2 1.7 5475 chr3R 28068514 intron CG34362 + chr3R 28071252 intron CG34362 + chr3R 28073989 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-138 2376 chr3R 28103301 28103315 chr3R 28103418 28103433 6 116 3.5 6.5 5.0 1.0 132 chr3R 28103301 intergenic not near genes chr3R 28103367 intergenic not near genes chr3R 28103433 intergenic not near genes chr3R_6_28100001 chr3R_28100001 RAL-138 2377 chr3R 28103316 28103359 chr3R 28103416 28103441 17 111 1.5 6.5 4.0 3.4 125 chr3R 28103316 intergenic not near genes chr3R 28103378 intergenic not near genes chr3R 28103441 intergenic not near genes chr3R_17_28100001 chr3R_28100001 RAL-138 2378 chr3R 28115496 28115516 chr3R 28115597 28115617 6 101 6.5 1.0 3.8 1.2 121 chr3R 28115496 intergenic not near genes chr3R 28115556 intergenic not near genes chr3R 28115617 intergenic not near genes chr3R_6_28115001 chr3R_28115001 RAL-138 2379 chr3R 28115517 28115544 chr3R 28115587 28115645 9 97 3.0 1.5 2.2 2.8 128 chr3R 28115517 intergenic not near genes chr3R 28115581 intergenic not near genes chr3R 28115645 intergenic not near genes chr3R_9_28115001 chr3R_28115001 RAL-138 2380 chr3R 28139830 28139882 chr3R 28140639 28140682 10 802 3.0 2.5 2.8 2.6 852 chr3R 28139830 intergenic not near genes chr3R 28140256 intergenic not near genes chr3R 28140682 intergenic not near genes chr3R_10_28140001 chr3R_28140001 RAL-138 2381 chr3R 28158792 28158832 chr3R 28159141 28159174 11 346 6.0 4.0 5.0 1.8 382 chr3R 28158792 intron CG34354 + chr3R 28158983 intron CG34354 + chr3R 28159174 intron CG34354 + chr3R_11_28155001 chr3R_28155001 RAL-138 2382 chr3R 28173648 28173690 chr3R 28181103 28181145 mdg1 9 7455 4.0 4.0 4.0 1.8 7497 chr3R 28173648 intron CG34354 + chr3R 28177396 intron CG34354 + chr3R 28181145 intron CG34354 + chr3R_9_28175001 chr3R_28175001 RAL-138 2383 chr3R 28234511 28234536 chr3R 28234600 28234600 6 91 8.0 2.5 5.2 1.0 89 chr3R 28234511 intron CG34354 + chr3R 28234556 intron CG34354 + chr3R 28234600 intron CG34354 + chr3R_6_28230001 chr3R_28230001 RAL-138 2384 chr3R 28253337 28253360 chr3R 28255853 28255895 jockey 14 2530 6.5 6.5 6.5 1.9 2558 chr3R 28253337 intergenic not near genes chr3R 28254616 intergenic not near genes chr3R 28255895 intergenic not near genes chr3R_14_28250001 chr3R_28250001 RAL-138 2385 chr3R 28282970 28283003 chr3R 28283624 28283657 5 654 3.0 5.5 4.2 1.0 687 chr3R 28282970 exon CG34436 + chr3R 28283314 exon CG34436 + chr3R 28283657 intergenic CG34437 +,CG34436 + chr3R_5_28280001 chr3R_28280001 RAL-138 2386 chr3R 28302090 28302126 chr3R 28302553 28302590 jockey 9 462 2.0 3.5 2.8 2.4 500 chr3R 28302090 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302590 intergenic not near genes chr3R_9_28300001 chr3R_28300001 RAL-138 2387 chr3R 28393688 28393729 chr3R 28393813 28393853 6 125 2.5 0.5 1.5 2.4 165 chr3R 28393688 intergenic not near genes chr3R 28393770 intergenic not near genes chr3R 28393853 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-138 2388 chr3R 28407686 28407732 chr3R 28407797 28407843 15 106 2.0 3.0 2.5 4.3 157 chr3R 28407686 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407843 intergenic not near genes chr3R_15_28405001 chr3R_28405001 RAL-138 2389 chr3R 28686704 28686742 chr3R 28686811 28686846 13 106 6.0 4.0 5.0 2.2 142 chr3R 28686704 intron CG9990 + chr3R 28686775 intron CG9990 + chr3R 28686846 intron CG9990 + chr3R_13_28685001 chr3R_28685001 RAL-138 2390 chr3R 28719559 28719603 chr3R 28719666 28719711 35 104 4.5 18.5 11.5 2.8 152 chr3R 28719559 intron htt + chr3R 28719635 intron htt + chr3R 28719711 exon htt + chr3R_35_28715001 chr3R_28715001 RAL-138 2391 chr3R 14455994 14455994 chr3R 28778811 28778824 4 14322820 20.0 18.0 19.0 0.2 14322830 chr3R 14455994 intron cv-c - chr3R 21617409 intron InR - chr3R 28778824 intergenic not near genes chr3R_4_21615001 chr3R_21615001 RAL-138 2392 chr3R 28811566 28811597 chr3R 28811737 28811768 8 171 5.0 10.0 7.5 0.9 202 chr3R 28811566 intergenic wdn - chr3R 28811667 intergenic wdn -,CG1646 + chr3R 28811768 intergenic CG1646 +,wdn - chr3R_8_28810001 chr3R_28810001 RAL-138 2393 chr3R 28823097 28823122 chr3R 28823189 28823223 4 98 13.5 10.5 12.0 0.3 126 chr3R 28823097 exon CG1647 + chr3R 28823160 exon CG1647 + chr3R 28823223 exon CG1647 + chr3R_4_28820001 chr3R_28820001 RAL-138 2394 chr3R 28823132 28823142 chr3R 28823185 28823212 12 68 8.0 10.0 9.0 1.2 80 chr3R 28823132 exon CG1647 + chr3R 28823172 exon CG1647 + chr3R 28823212 exon CG1647 + chr3R_12_28820001 chr3R_28820001 RAL-138 2395 chr3R 21907534 21907536 chr3R 28831799 28831799 6 6924264 10.0 33.0 21.5 0.3 6924265 chr3R 21907534 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831799 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-138 2396 chr3R 21907534 21907536 chr3R 28831801 28831801 45 6924266 10.0 33.0 21.5 2.0 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-138 2397 chr3R 21907534 21907536 chr3R 28831802 28831802 47 6924267 10.0 33.0 21.5 2.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_47_25365001 chr3R_25365001 RAL-138 2398 chr3R 28924872 28924927 chr3R 28925059 28925114 19 186 4.5 6.0 5.2 3.1 242 chr3R 28924872 intron CG11828 + chr3R 28924993 3` UTR CG11828 + chr3R 28925114 3` UTR CG14521 - chr3R_19_28920001 chr3R_28920001 RAL-138 2399 chr3R 28971144 28971190 chr3R 28971250 28971296 11 106 5.0 3.0 4.0 2.2 152 chr3R 28971144 5` UTR CR45669 + chr3R 28971220 5` UTR CR45669 + chr3R 28971296 5` UTR CR45669 + chr3R_11_28970001 chr3R_28970001 RAL-138 2400 chr3R 21907535 21907536 chr3R 29013339 29013339 11 7105803 10.0 15.0 12.5 0.8 7105804 chr3R 21907535 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013339 intron wat - chr3R_11_25460001 chr3R_25460001 RAL-138 2401 chr3R 21907534 21907536 chr3R 29013340 29013340 19 7105806 10.0 15.5 12.8 1.4 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_19_25460001 chr3R_25460001 RAL-138 2402 chr3R 29030573 29030630 chr3R 29030677 29030734 10 104 4.0 1.0 2.5 2.9 161 chr3R 29030573 3` UTR CG1951 + chr3R 29030654 3` UTR CG1951 + chr3R 29030734 3` UTR CG1951 + chr3R_10_29030001 chr3R_29030001 RAL-138 2403 chr3R 29032721 29032739 chr3R 29032823 29032841 5 99 16.0 5.0 10.5 0.4 120 chr3R 29032721 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032781 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032841 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-138 2404 chr3R 29032740 29032771 chr3R 29032821 29032835 14 89 8.5 5.5 7.0 1.8 95 chr3R 29032740 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032788 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032835 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_14_29030001 chr3R_29030001 RAL-138 2405 chr3R 29034075 29034096 chr3R 29034495 29034516 9 420 0.5 9.0 4.8 1.6 441 chr3R 29034075 5` UTR CR45044 + chr3R 29034296 intergenic CR45044 +,Cpsf100 +,beta4GalNAcTB - chr3R 29034516 intergenic Cpsf100 +,CR45044 + chr3R_9_29030001 chr3R_29030001 RAL-138 2406 chr3R 29070029 29070080 chr3R 29070135 29070186 5 106 0.5 2.5 1.5 2.0 157 chr3R 29070029 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070186 intron CG11873 + chr3R_5_29070001 chr3R_29070001 RAL-138 2407 chr3R 29079399 29079405 chr3R 29080796 29080802 NOF 4 1397 0.5 4.0 2.2 1.2 1403 chr3R 29079399 intron CG11873 + chr3R 29080100 intron CG11873 + chr3R 29080802 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-138 2408 chr3R 29237231 29237267 chr3R 29239276 29239292 7 2037 20.5 6.5 13.5 0.5 2061 chr3R 29237231 exon CG11951 - chr3R 29238262 intron CG11951 - chr3R 29239292 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-138 2409 chr3R 29237270 29237281 chr3R 29239275 29239295 4 2015 21.0 6.0 13.5 0.3 2025 chr3R 29237270 exon CG11951 - chr3R 29238282 intron CG11951 - chr3R 29239295 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-138 2410 chr3R 29256242 29256299 chr3R 29256347 29256404 22 103 4.0 5.0 4.5 4.0 162 chr3R 29256242 intergenic CG45544 +,stg - chr3R 29256323 intergenic CG45544 + chr3R 29256404 intergenic CG45544 + chr3R_22_29255001 chr3R_29255001 RAL-138 2411 chr3R 29282784 29282810 chr3R 29282895 29282916 5 109 3.0 6.0 4.5 0.9 132 chr3R 29282784 intergenic not near genes chr3R 29282850 intergenic not near genes chr3R 29282916 intergenic not near genes chr3R_5_29280001 chr3R_29280001 RAL-138 2412 chr3R 29288923 29288974 chr3R 29289044 29289082 11 116 3.0 4.0 3.5 2.4 159 chr3R 29288923 intergenic not near genes chr3R 29289002 intergenic not near genes chr3R 29289082 intergenic not near genes chr3R_11_29285001 chr3R_29285001 RAL-138 2413 chr3R 29319810 29319842 chr3R 29320154 29320186 jockey 7 344 2.5 6.5 4.5 1.3 376 chr3R 29319810 intergenic Cnx99A - chr3R 29319998 intergenic Cnx99A - chr3R 29320186 intergenic not near genes chr3R_7_29315001 chr3R_29315001 RAL-138 2414 chr3R 29332264 29332307 chr3R 29332366 29332409 7 102 3.0 2.0 2.5 2.0 145 chr3R 29332264 intergenic not near genes chr3R 29332336 intergenic not near genes chr3R 29332409 intergenic not near genes chr3R_7_29330001 chr3R_29330001 RAL-138 2415 chr3R 29376335 29376342 chr3R 29376448 29376455 4 113 8.0 0.5 4.2 0.8 120 chr3R 29376335 intergenic not near genes chr3R 29376395 intergenic not near genes chr3R 29376455 intergenic not near genes chr3R_4_29375001 chr3R_29375001 RAL-138 2416 chr3R 29376348 29376365 chr3R 29376460 29376478 9 113 3.0 0.5 1.8 3.2 130 chr3R 29376348 intergenic not near genes chr3R 29376413 intergenic not near genes chr3R 29376478 intergenic not near genes chr3R_9_29375001 chr3R_29375001 RAL-138 2417 chr3R 29402969 29403007 chr3R 29403089 29403126 7 120 3.0 2.5 2.8 1.8 157 chr3R 29402969 intron Ptp99A + chr3R 29403048 intron Ptp99A + chr3R 29403126 intron Ptp99A + chr3R_7_29400001 chr3R_29400001 RAL-138 2418 chr3R 29406597 29406636 chr3R 29407908 29407925 jockey 13 1307 7.0 7.0 7.0 1.6 1328 chr3R 29406597 intron Ptp99A + chr3R 29407261 intron Ptp99A + chr3R 29407925 intron Ptp99A + chr3R_13_29405001 chr3R_29405001 RAL-138 2419 chr3R 29411992 29412047 chr3R 29412096 29412114 8 88 9.0 10.5 9.8 0.7 122 chr3R 29411992 intron Ptp99A + chr3R 29412053 intron Ptp99A + chr3R 29412114 intron Ptp99A + chr3R_8_29410001 chr3R_29410001 RAL-138 2420 chr3R 29449344 29449385 chr3R 29449446 29449488 5 103 2.5 5.0 3.8 1.0 144 chr3R 29449344 intron Ptp99A + chr3R 29449416 intron Ptp99A + chr3R 29449488 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-138 2421 chr3R 29566358 29566410 chr3R 29566460 29566512 17 102 5.0 5.0 5.0 2.8 154 chr3R 29566358 intergenic not near genes chr3R 29566435 intergenic not near genes chr3R 29566512 intergenic not near genes chr3R_17_29565001 chr3R_29565001 RAL-138 2422 chr3R 29589889 29589910 chr3R 29590392 29590413 10 502 1.0 8.5 4.8 1.7 524 chr3R 29589889 intergenic CG11470 -,CG31041 - chr3R 29590151 exon CG31041 - chr3R 29590413 intron CG31041 - chr3R_10_29590001 chr3R_29590001 RAL-138 2423 chr3R 29624929 29624991 chr3R 29625030 29625092 22 99 6.5 7.0 6.8 2.8 163 chr3R 29624929 intergenic not near genes chr3R 29625010 intergenic not near genes chr3R 29625092 intergenic not near genes chr3R_22_29625001 chr3R_29625001 RAL-138 2424 chr3R 29645802 29645808 chr3R 29645908 29645912 4 106 10.5 5.0 7.8 0.5 110 chr3R 29645802 intron Dop1R2 - chr3R 29645857 intron Dop1R2 - chr3R 29645912 intron Dop1R2 - chr3R_4_29645001 chr3R_29645001 RAL-138 2425 chr3R 29645819 29645842 chr3R 29645925 29645948 9 104 6.0 7.5 6.8 1.2 129 chr3R 29645819 intron Dop1R2 - chr3R 29645884 intron Dop1R2 - chr3R 29645948 intron Dop1R2 - chr3R_9_29645001 chr3R_29645001 RAL-138 2426 chr3R 29645844 29645857 chr3R 29645924 29645935 8 92 4.0 7.0 5.5 1.2 91 chr3R 29645844 intron Dop1R2 - chr3R 29645890 intron Dop1R2 - chr3R 29645935 intron Dop1R2 - chr3R_8_29645001 chr3R_29645001 RAL-138 2427 chr3R 29718124 29718174 chr3R 29718223 29718274 24 100 6.5 8.0 7.2 2.9 150 chr3R 29718124 intergenic not near genes chr3R 29718199 intergenic CG15506 + chr3R 29718274 intergenic CG15506 + chr3R_24_29715001 chr3R_29715001 RAL-138 2428 chr3R 29719378 29719428 chr3R 29719489 29719539 19 111 4.5 4.5 4.5 3.5 161 chr3R 29719378 intron CG15506 + chr3R 29719458 intron CG15506 + chr3R 29719539 intron CG15506 + chr3R_19_29715001 chr3R_29715001 RAL-138 2429 chr3R 29754944 29754988 chr3R 29755047 29755090 8 102 0.0 6.5 3.2 1.9 146 chr3R 29754944 intergenic CR44953 -,yata + chr3R 29755017 intergenic CR44953 -,yata + chr3R 29755090 intergenic CR44953 - chr3R_8_29755001 chr3R_29755001 RAL-138 2430 chr3R 29758918 29758970 chr3R 29759016 29759073 20 97 3.0 9.5 6.2 2.8 155 chr3R 29758918 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759073 intergenic CR44953 - chr3R_20_29755001 chr3R_29755001 RAL-138 2431 chr3R 29760340 29760383 chr3R 29761566 29761609 pogo 14 1225 4.5 2.5 3.5 3.1 1269 chr3R 29760340 intergenic not near genes chr3R 29760974 intergenic not near genes chr3R 29761609 intergenic not near genes chr3R_14_29760001 chr3R_29760001 RAL-138 2432 chr3R 29773864 29773873 chr3R 29773980 29773987 6 116 21.5 0.0 10.8 0.5 123 chr3R 29773864 intron kay + chr3R 29773926 intron kay + chr3R 29773987 intron kay + chr3R_6_29770001 chr3R_29770001 RAL-138 2433 chr3R 29773876 29773898 chr3R 29773979 29773994 9 111 10.5 0.0 5.2 1.5 118 chr3R 29773876 intron kay + chr3R 29773935 intron kay + chr3R 29773994 intron kay + chr3R_9_29770001 chr3R_29770001 RAL-138 2434 chr3R 29854807 29854857 chr3R 29854912 29854962 22 103 9.5 8.0 8.8 2.2 155 chr3R 29854807 3` UTR dgt1 - chr3R 29854884 exon dgt1 - chr3R 29854962 exon dgt1 - chr3R_22_29850001 chr3R_29850001 RAL-138 2435 chr3R 29881996 29882050 chr3R 29891178 29891232 roo 24 9182 3.0 4.5 3.8 5.0 9236 chr3R 29881996 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891232 intron CG31038 + chr3R_24_29885001 chr3R_29885001 RAL-138 2436 chr3R 30032137 30032177 chr3R 30032241 30032258 19 99 16.0 13.5 14.8 1.2 121 chr3R 30032137 intron Axn + chr3R 30032198 intron Axn + chr3R 30032258 intron Axn + chr3R_19_30030001 chr3R_30030001 RAL-138 2437 chr3R 30075566 30075589 chr3R 30075680 30075703 4 114 3.0 8.5 5.8 0.6 137 chr3R 30075566 intron sima + chr3R 30075634 intron sima + chr3R 30075703 intron sima + chr3R_4_30075001 chr3R_30075001 RAL-138 2438 chr3R 30084847 30084879 chr3R 30086338 30086371 hobo 5 1491 4.0 3.5 3.8 1.0 1524 chr3R 30084847 intron sima + chr3R 30085609 intron sima + chr3R 30086371 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-138 2439 chr3R 30118925 30118968 chr3R 30119014 30119069 6 97 6.0 2.5 4.2 1.2 144 chr3R 30118925 intron sima + chr3R 30118997 intron sima + chr3R 30119069 intron sima + chr3R_6_30115001 chr3R_30115001 RAL-138 2440 chr3R 30182730 30182786 chr3R 30182892 30182949 14 161 3.5 5.5 4.5 2.5 219 chr3R 30182730 intergenic not near genes chr3R 30182840 intergenic not near genes chr3R 30182949 intergenic not near genes chr3R_14_30180001 chr3R_30180001 RAL-138 2441 chr3R 30203365 30203388 chr3R 30203469 30203492 7 104 2.0 3.0 2.5 2.0 127 chr3R 30203365 intergenic CG9743 - chr3R 30203428 intergenic CG9743 - chr3R 30203492 intergenic CG9743 - chr3R_7_30200001 chr3R_30200001 RAL-138 2442 chr3R 30210662 30210668 chr3R 30210767 30210773 7 104 0.0 9.5 4.8 1.2 111 chr3R 30210662 intergenic CecA1 +,Anp + chr3R 30210718 intergenic CecA1 +,Anp + chr3R 30210773 intergenic CecA1 +,Anp + chr3R_7_30210001 chr3R_30210001 RAL-138 2443 chr3R 30269624 30269664 chr3R 30269723 30269772 6 106 0.0 0.0 0.0 6.0 148 chr3R 30269624 intergenic not near genes chr3R 30269698 intergenic not near genes chr3R 30269772 intergenic not near genes chr3R_6_30265001 chr3R_30265001 RAL-138 2444 chr3R 7773344 7773344 chr3R 30278264 30278265 4 22504920 6.0 24.0 15.0 0.2 22504921 chr3R 7773344 intergenic not near genes chr3R 19025804 exon CG14285 + chr3R 30278265 5` UTR hdc + chr3R_4_19025001 chr3R_19025001 RAL-138 2445 chr3R 30307130 30307150 chr3R 30307219 30307256 4 102 0.5 2.0 1.2 1.8 126 chr3R 30307130 intron hdc + chr3R 30307193 intron hdc + chr3R 30307256 intron hdc + chr3R_4_30305001 chr3R_30305001 RAL-138 2446 chr3R 30315615 30315621 chr3R 30315719 30315726 7 105 12.0 8.0 10.0 0.6 111 chr3R 30315615 intron hdc + chr3R 30315670 intron hdc + chr3R 30315726 intron hdc + chr3R_7_30315001 chr3R_30315001 RAL-138 2447 chr3R 30332019 30332025 chr3R 30332122 30332129 4 104 15.5 5.5 10.5 0.3 110 chr3R 30332019 intron hdc + chr3R 30332074 intron hdc + chr3R 30332129 intron hdc + chr3R_4_30330001 chr3R_30330001 RAL-138 2448 chr3R 30332031 30332059 chr3R 30332119 30332153 6 94 7.0 5.0 6.0 0.9 122 chr3R 30332031 intron hdc + chr3R 30332092 intron hdc + chr3R 30332153 intron hdc + chr3R_6_30330001 chr3R_30330001 RAL-138 2449 chr3R 30347009 30347026 chr3R 30347115 30347134 6 106 7.0 8.5 7.8 0.7 125 chr3R 30347009 intron hdc + chr3R 30347072 intron hdc + chr3R 30347134 intron hdc + chr3R_6_30345001 chr3R_30345001 RAL-138 2450 chr3R 30359373 30359383 chr3R 30359514 30359540 8 155 4.0 10.0 7.0 1.0 167 chr3R 30359373 intron hdc + chr3R 30359456 intron hdc + chr3R 30359540 intron hdc + chr3R_8_30355001 chr3R_30355001 RAL-138 2451 chr3R 30375521 30375564 chr3R 30383169 30383214 412 5 7649 1.5 4.0 2.8 1.3 7693 chr3R 30375521 intergenic not near genes chr3R 30379368 intergenic not near genes chr3R 30383214 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-138 2452 chr3R 30437777 30437794 chr3R 30437898 30437916 6 122 14.0 11.0 12.5 0.4 139 chr3R 30437777 intron CG15537 - chr3R 30437846 intron CG15537 - chr3R 30437916 intron CG15537 - chr3R_6_30435001 chr3R_30435001 RAL-138 2453 chr3R 30437799 30437813 chr3R 30437895 30437933 7 115 9.0 10.5 9.8 0.6 134 chr3R 30437799 intron CG15537 - chr3R 30437866 intron CG15537 - chr3R 30437933 intron CG15537 - chr3R_7_30435001 chr3R_30435001 RAL-138 2454 chr3R 30466677 30466691 chr3R 30466782 30466794 4 104 9.5 5.0 7.2 0.5 117 chr3R 30466677 intron PH4alphaEFB + chr3R 30466736 intron PH4alphaEFB + chr3R 30466794 intron PH4alphaEFB + chr3R_4_30465001 chr3R_30465001 RAL-138 2455 chr3R 30466716 30466729 chr3R 30466809 30466833 6 103 4.5 9.0 6.8 0.8 117 chr3R 30466716 intron PH4alphaEFB + chr3R 30466774 intron PH4alphaEFB + chr3R 30466833 intron PH4alphaEFB + chr3R_6_30465001 chr3R_30465001 RAL-138 2456 chr3R 30480467 30480505 chr3R 30482945 30482957 jockey 13 2485 5.5 8.0 6.8 1.7 2490 chr3R 30480467 intron PH4alphaEFB + chr3R 30481712 intron PH4alphaEFB + chr3R 30482957 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-138 2457 chr3R 5565995 5566025 chr3R 30512741 30512770 opus 4 24946745 34.0 17.0 25.5 0.2 24946775 chr3R 5565995 intron CG12746 + chr3R 18039382 intergenic not near genes chr3R 30512770 intron CG31524 - chr3R_4_18035001 chr3R_18035001 RAL-138 2458 chr3R 30548987 30549033 chr3R 30549103 30549146 6 116 1.5 2.0 1.8 2.1 159 chr3R 30548987 intron tmod + chr3R 30549066 intron tmod + chr3R 30549146 intron tmod + chr3R_6_30545001 chr3R_30545001 RAL-138 2459 chr3R 30571686 30571717 chr3R 30571791 30571822 7 103 0.5 3.0 1.8 2.5 136 chr3R 30571686 intron tmod + chr3R 30571754 intron tmod + chr3R 30571822 exon tmod + chr3R_7_30570001 chr3R_30570001 RAL-138 2460 chr3R 30649859 30649876 chr3R 30649951 30649982 6 104 4.5 2.5 3.5 1.3 123 chr3R 30649859 3` UTR CG34432 + chr3R 30649920 intergenic CG34433 +,CG34432 + chr3R 30649982 exon CG34433 + chr3R_6_30645001 chr3R_30645001 RAL-138 2461 chr3R 30679494 30679552 chr3R 30686988 30687046 blood 13 7494 3.0 2.5 2.8 3.4 7552 chr3R 30679494 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687046 intergenic not near genes chr3R_13_30680001 chr3R_30680001 RAL-138 2462 chr3R 30689507 30689548 chr3R 30689610 30689652 9 104 2.0 6.0 4.0 1.8 145 chr3R 30689507 intergenic not near genes chr3R 30689580 intergenic not near genes chr3R 30689652 intergenic not near genes chr3R_9_30685001 chr3R_30685001 RAL-138 2463 chr3R 30700840 30700873 chr3R 30700988 30701021 6 148 1.0 0.0 0.5 4.0 181 chr3R 30700840 intergenic not near genes chr3R 30700930 intergenic not near genes chr3R 30701021 intergenic not near genes chr3R_6_30700001 chr3R_30700001 RAL-138 2464 chr3R 30733327 30733348 chr3R 30733417 30733463 5 110 4.5 5.0 4.8 0.9 136 chr3R 30733327 intergenic not near genes chr3R 30733395 intergenic not near genes chr3R 30733463 intergenic not near genes chr3R_5_30730001 chr3R_30730001 RAL-138 2465 chr3R 30761327 30761333 chr3R 30761434 30761440 6 107 8.5 6.5 7.5 0.7 113 chr3R 30761327 intergenic not near genes chr3R 30761384 intergenic not near genes chr3R 30761440 intergenic not near genes chr3R_6_30760001 chr3R_30760001 RAL-138 2466 chr3R 30791887 30791891 chr3R 30792028 30792032 5 141 26.0 14.5 20.2 0.2 145 chr3R 30791887 exon wts - chr3R 30791960 intron wts - chr3R 30792032 exon wts - chr3R_5_30790001 chr3R_30790001 RAL-138 2467 chr3R 30791894 30791901 chr3R 30792026 30792034 6 137 20.0 13.5 16.8 0.3 140 chr3R 30791894 exon wts - chr3R 30791964 intron wts - chr3R 30792034 exon wts - chr3R_6_30790001 chr3R_30790001 RAL-138 2468 chr3R 30791904 30791943 chr3R 30792024 30792052 36 127 8.0 11.5 9.8 3.3 148 chr3R 30791904 exon wts - chr3R 30791978 intron wts - chr3R 30792052 exon wts - chr3R_36_30790001 chr3R_30790001 RAL-138 2469 chr3R 30818786 30818840 chr3R 30820376 30820430 1360 29 1590 10.0 8.5 9.2 2.8 1644 chr3R 30818786 intron cindr + chr3R 30819608 intron cindr + chr3R 30820430 intron cindr + chr3R_29_30815001 chr3R_30815001 RAL-138 2470 chr3R 30859385 30859422 chr3R 30859488 30859525 6 103 1.5 1.5 1.5 2.4 140 chr3R 30859385 intergenic not near genes chr3R 30859455 intergenic not near genes chr3R 30859525 intergenic not near genes chr3R_6_30855001 chr3R_30855001 RAL-138 2471 chr3R 30880121 30880158 chr3R 30880255 30880292 14 132 6.5 6.0 6.2 1.9 171 chr3R 30880121 intron CG12071 - chr3R 30880206 intron CG12071 - chr3R 30880292 intron CG12071 - chr3R_14_30880001 chr3R_30880001 RAL-138 2472 chr3R 30955770 30955805 chr3R 30955876 30955911 5 106 0.5 1.0 0.8 2.8 141 chr3R 30955770 intergenic not near genes chr3R 30955840 intergenic not near genes chr3R 30955911 intergenic not near genes chr3R_5_30955001 chr3R_30955001 RAL-138 2473 chr3R 30977565 30977611 chr3R 30977855 30977900 8 289 35.0 25.5 30.2 0.3 335 chr3R 30977565 intron 5-HT7 - chr3R 30977732 intron 5-HT7 - chr3R 30977900 intron 5-HT7 - chr3R_8_30975001 chr3R_30975001 RAL-138 2474 chr3R 30993649 30993663 chr3R 30993742 30993769 11 104 3.5 6.5 5.0 1.8 120 chr3R 30993649 intron 5-HT7 - chr3R 30993709 intron 5-HT7 - chr3R 30993769 intron 5-HT7 - chr3R_11_30990001 chr3R_30990001 RAL-138 2475 chr3R 31040819 31040861 chr3R 31040929 31040971 8 108 1.0 3.5 2.2 2.5 152 chr3R 31040819 intron CanA1 + chr3R 31040895 intron CanA1 + chr3R 31040971 intron CanA1 + chr3R_8_31040001 chr3R_31040001 RAL-138 2476 chr3R 31055495 31055516 chr3R 31055625 31055628 5 125 8.0 11.0 9.5 0.5 133 chr3R 31055495 3` UTR dco - chr3R 31055562 3` UTR dco - chr3R 31055628 3` UTR dco - chr3R_5_31055001 chr3R_31055001 RAL-138 2477 chr3R 31073323 31073343 chr3R 31073429 31073433 5 103 10.0 14.0 12.0 0.4 110 chr3R 31073323 exon Sox100B + chr3R 31073378 intron Sox100B + chr3R 31073433 intron Sox100B + chr3R_5_31070001 chr3R_31070001 RAL-138 2478 chr3R 31074210 31074257 chr3R 31081833 31081880 springer 12 7622 9.0 6.5 7.8 1.4 7670 chr3R 31074210 intron Sox100B + chr3R 31078045 intron Sox100B + chr3R 31081880 intron Sox100B + chr3R_12_31075001 chr3R_31075001 RAL-138 2479 chr3R 31084880 31084934 chr3R 31084981 31085035 14 101 3.0 5.5 4.2 2.7 155 chr3R 31084880 intergenic not near genes chr3R 31084958 intergenic not near genes chr3R 31085035 intergenic not near genes chr3R_14_31080001 chr3R_31080001 RAL-138 2480 chr3R 31136239 31136241 chr3R 31136332 31136370 5 108 4.5 3.0 3.8 1.0 131 chr3R 31136239 intron Gycbeta100B + chr3R 31136304 intron Gycbeta100B + chr3R 31136370 intron Gycbeta100B + chr3R_5_31135001 chr3R_31135001 RAL-138 2481 chr3R 31137138 31137180 chr3R 31137241 31137285 7 103 0.5 3.0 1.8 2.5 147 chr3R 31137138 intron Gycbeta100B + chr3R 31137212 intron Gycbeta100B + chr3R 31137285 intron Gycbeta100B + chr3R_7_31135001 chr3R_31135001 RAL-138 2482 chr3R 31167687 31167707 chr3R 31167791 31167811 15 104 0.0 8.5 4.2 2.9 124 chr3R 31167687 intron,intron Gycbeta100B +,stops - chr3R 31167749 intron,intron Gycbeta100B +,stops - chr3R 31167811 intron,intron Gycbeta100B +,stops - chr3R_15_31165001 chr3R_31165001 RAL-138 2483 chr3R 31279352 31279407 chr3R 31285568 31285623 diver 11 6215 1.0 2.0 1.5 4.4 6271 chr3R 31279352 intergenic not near genes chr3R 31282488 intergenic not near genes chr3R 31285623 intergenic not near genes chr3R_11_31280001 chr3R_31280001 RAL-138 2484 chr3R 31319528 31319567 chr3R 31320411 31320450 8 888 24.0 25.0 24.5 0.3 922 chr3R 31319528 intron CG34347 + chr3R 31319989 intron CG34347 + chr3R 31320450 intron CG34347 + chr3R_8_31315001 chr3R_31315001 RAL-138 2485 chr3R 31413071 31413118 chr3R 31418293 31418310 copia 9 5217 0.5 1.5 1.0 4.5 5239 chr3R 31413071 intron Gprk2 + chr3R 31415690 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-138 2486 chr3R 31431087 31431119 chr3R 31431193 31431213 8 105 2.5 1.5 2.0 2.7 126 chr3R 31431087 intron Gprk2 + chr3R 31431150 intron Gprk2 + chr3R 31431213 intron Gprk2 + chr3R_8_31430001 chr3R_31430001 RAL-138 2487 chr3R 31442261 31442292 chr3R 31442371 31442371 9 104 5.0 7.0 6.0 1.3 110 chr3R 31442261 intron Gprk2 + chr3R 31442316 intron Gprk2 + chr3R 31442371 intron Gprk2 + chr3R_9_31440001 chr3R_31440001 RAL-138 2488 chr3R 31528246 31528270 chr3R 31528462 31528496 5 224 1.0 2.0 1.5 2.0 250 chr3R 31528246 intergenic not near genes chr3R 31528371 intergenic not near genes chr3R 31528496 intergenic not near genes chr3R_5_31525001 chr3R_31525001 RAL-138 2489 chr3R 31561763 31561810 chr3R 31561869 31561927 14 114 5.5 8.5 7.0 1.8 164 chr3R 31561763 exon nyo + chr3R 31561845 intron nyo + chr3R 31561927 intron nyo + chr3R_14_31560001 chr3R_31560001 RAL-138 2490 chr3R 31630036 31630083 chr3R 31630166 31630212 10 128 2.5 2.0 2.2 3.1 176 chr3R 31630036 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630212 intron kek6 + chr3R_10_31630001 chr3R_31630001 RAL-138 2491 chr3R 31691508 31691562 chr3R 31696299 31696352 Doc 31 4789 5.5 7.0 6.2 4.3 4844 chr3R 31691508 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696352 intergenic not near genes chr3R_31_31690001 chr3R_31690001 RAL-138 2492 chr3R 31774850 31774890 chr3R 31775020 31775060 9 168 7.5 4.0 5.8 1.3 210 chr3R 31774850 3` UTR sip3 + chr3R 31774955 3` UTR sip3 + chr3R 31775060 3` UTR,3` UTR sip3 +,CG2126 - chr3R_9_31770001 chr3R_31770001 RAL-138 2493 chr3R 31828849 31828873 chr3R 31828939 31828987 6 110 3.5 4.5 4.0 1.2 138 chr3R 31828849 intron RhoGAP100F + chr3R 31828918 intron RhoGAP100F + chr3R 31828987 intron RhoGAP100F + chr3R_6_31825001 chr3R_31825001 RAL-138 2494 chr3R 31829284 31829333 chr3R 31829881 31829913 22 595 2.5 5.5 4.0 4.4 629 chr3R 31829284 intron RhoGAP100F + chr3R 31829598 intron RhoGAP100F + chr3R 31829913 intron RhoGAP100F + chr3R_22_31825001 chr3R_31825001 RAL-138 2495 chr3R 31848721 31848761 chr3R 31848824 31848864 7 103 4.0 2.0 3.0 1.8 143 chr3R 31848721 intergenic not near genes chr3R 31848792 intergenic not near genes chr3R 31848864 intergenic not near genes chr3R_7_31845001 chr3R_31845001 RAL-138 2496 chr3R 31858119 31858170 chr3R 31858221 31858273 7 102 3.0 2.5 2.8 1.8 154 chr3R 31858119 intron heph - chr3R 31858196 intron heph - chr3R 31858273 intron heph - chr3R_7_31855001 chr3R_31855001 RAL-138 2497 chr3R 31858725 31858781 chr3R 31858834 31858836 4 95 4.5 2.5 3.5 0.9 111 chr3R 31858725 intron heph - chr3R 31858780 intron heph - chr3R 31858836 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-138 2498 chr3R 31864256 31864271 chr3R 31864363 31864371 5 104 9.0 10.0 9.5 0.5 115 chr3R 31864256 intron heph - chr3R 31864314 intron heph - chr3R 31864371 intron heph - chr3R_5_31860001 chr3R_31860001 RAL-138 2499 chr3R 31885652 31885702 chr3R 31885754 31885804 9 100 2.0 3.0 2.5 2.6 152 chr3R 31885652 intron heph - chr3R 31885728 intron heph - chr3R 31885804 intron heph - chr3R_9_31885001 chr3R_31885001 RAL-138 2500 chr3R 31930853 31930905 chr3R 31930978 31931028 11 123 3.5 4.5 4.0 2.2 175 chr3R 31930853 intron heph - chr3R 31930940 intron heph - chr3R 31931028 intron heph - chr3R_11_31930001 chr3R_31930001 RAL-138 2501 chr3R 31931171 31931215 chr3R 31931279 31931323 30 108 6.5 11.0 8.8 3.1 152 chr3R 31931171 intron heph - chr3R 31931247 intron heph - chr3R 31931323 intron heph - chr3R_30_31930001 chr3R_31930001 RAL-138 2502 chr3R 31997970 31998019 chr3R 32005465 32005514 blood 10 7495 3.0 3.5 3.2 2.4 7544 chr3R 31997970 intron heph - chr3R 32001742 intron heph - chr3R 32005514 intron heph - chr3R_10_32000001 chr3R_32000001 RAL-138 2503 chr4 76478 76491 chr4 81945 81959 I-element 4 5464 0.0 0.0 0.0 4.0 5481 chr4 76478 intron pan + chr4 79218 intron pan + chr4 81959 intron pan + chr4_4_75001 chr4_75001 RAL-138 2504 chr4 671586 671623 chr4 680194 680231 Tirant 7 8608 5.0 2.0 3.5 1.6 8645 chr4 671586 intron CG11360 + chr4 675908 intron CG11360 + chr4 680231 intron CG11360 + chr4_7_675001 chr4_675001 RAL-138 2505 chr4 726654 726693 chr4 726769 726808 4 115 0.0 1.0 0.5 2.7 154 chr4 726654 intron bt + chr4 726731 intron bt + chr4 726808 intron bt + chr4_4_725001 chr4_725001 RAL-138 2506 chr4 959609 959653 chr4 959813 959857 4 204 3.0 1.0 2.0 1.3 248 chr4 959609 intergenic CR44030 +,CR45201 - chr4 959733 5` UTR CR44030 + chr4 959857 5` UTR CR44030 + chr4_4_955001 chr4_955001 RAL-138 2507 chr4 972480 972525 chr4 972587 972632 7 107 0.5 2.0 1.2 3.2 152 chr4 972480 intron fuss - chr4 972556 intron fuss - chr4 972632 intron fuss - chr4_7_970001 chr4_970001 RAL-138 2508 chrX 318449 318488 chrX 323560 323599 flea 5 5111 3.5 2.0 2.8 1.3 5150 chrX 318449 intron,intron CG3777 +,CG32816 - chrX 321024 intron,intron CG3777 +,CG32816 - chrX 323599 intron,intron CG3777 +,CG32816 - chrX_5_320001 chrX_320001 RAL-138 2509 chrX 325612 325616 chrX 325722 325725 4 110 3.0 2.5 2.8 1.1 113 chrX 325612 intron,intron CG3777 +,CG32816 - chrX 325668 intron,intron CG3777 +,CG32816 - chrX 325725 intron,intron CG3777 +,CG32816 - chrX_4_325001 chrX_325001 RAL-138 2510 chrX 325618 325642 chrX 325721 325752 4 108 2.0 2.5 2.2 1.2 134 chrX 325618 intron,intron CG3777 +,CG32816 - chrX 325685 intron,intron CG3777 +,CG32816 - chrX 325752 intron,intron CG3777 +,CG32816 - chrX_4_325001 chrX_325001 RAL-138 2511 chrX 440982 441023 chrX 441085 441126 7 103 1.0 4.5 2.8 1.8 144 chrX 440982 intron CG32816 - chrX 441054 intron CG32816 - chrX 441126 intron CG32816 - chrX_7_440001 chrX_440001 RAL-138 2512 chrX 450344 450386 chrX 450447 450485 7 102 2.0 3.5 2.8 1.8 141 chrX 450344 intron CG32816 - chrX 450414 intron CG32816 - chrX 450485 intron CG32816 - chrX_7_450001 chrX_450001 RAL-138 2513 chrX 494595 494613 chrX 494697 494730 4 112 4.5 5.0 4.8 0.7 135 chrX 494595 intergenic CG17778 + chrX 494662 5` UTR CG17778 + chrX 494730 intron CG17778 + chrX_4_490001 chrX_490001 RAL-138 2514 chrX 667621 667659 chrX 667730 667768 11 109 5.0 0.0 2.5 3.1 147 chrX 667621 intergenic not near genes chrX 667694 intergenic not near genes chrX 667768 intergenic not near genes chrX_11_665001 chrX_665001 RAL-138 2515 chrX 670273 670295 chrX 670368 670400 10 99 0.0 7.5 3.8 2.1 127 chrX 670273 intergenic not near genes chrX 670336 intergenic not near genes chrX 670400 intergenic not near genes chrX_10_670001 chrX_670001 RAL-138 2516 chrX 680828 680864 chrX 680931 680960 10 103 4.0 3.5 3.8 2.1 132 chrX 680828 intergenic not near genes chrX 680894 intergenic not near genes chrX 680960 intergenic not near genes chrX_10_680001 chrX_680001 RAL-138 2517 chrX 706770 706819 chrX 707167 707208 7 391 0.0 4.0 2.0 2.3 438 chrX 706770 intron sdk + chrX 706989 intron sdk + chrX 707208 intron sdk + chrX_7_705001 chrX_705001 RAL-138 2518 chrX 778109 778156 chrX 778224 778271 13 115 6.0 0.0 3.0 3.2 162 chrX 778109 intron fz3 + chrX 778190 intron fz3 + chrX 778271 intron fz3 + chrX_13_775001 chrX_775001 RAL-138 2519 chrX 780587 780593 chrX 780688 780692 4 100 8.5 0.5 4.5 0.7 105 chrX 780587 intron fz3 + chrX 780640 intron fz3 + chrX 780692 intron fz3 + chrX_4_780001 chrX_780001 RAL-138 2520 chrX 806759 806814 chrX 806878 806934 13 115 3.0 4.5 3.8 2.7 175 chrX 806759 intron Sec22 + chrX 806846 intron Sec22 + chrX 806934 intron Sec22 + chrX_13_805001 chrX_805001 RAL-138 2521 chrX 812249 812293 chrX 817901 817945 297 6 5648 4.0 1.5 2.8 1.6 5696 chrX 812249 intron CG43867 - chrX 815097 intron CG43867 - chrX 817945 intron CG43867 - chrX_6_815001 chrX_815001 RAL-138 2522 chrX 827581 827633 chrX 835397 835441 roo 10 7811 3.5 2.5 3.0 2.5 7860 chrX 827581 intron CG43867 - chrX 831511 intron CG43867 - chrX 835441 intron CG43867 - chrX_10_830001 chrX_830001 RAL-138 2523 chrX 868470 868502 chrX 868572 868603 5 102 3.5 7.0 5.2 0.8 133 chrX 868470 intron CG43867 - chrX 868536 intron CG43867 - chrX 868603 intron CG43867 - chrX_5_865001 chrX_865001 RAL-138 2524 chrX 906678 906716 chrX 908492 908529 S-element 13 1814 3.0 3.0 3.0 3.2 1851 chrX 906678 intron CG43867 - chrX 907604 intron CG43867 - chrX 908529 intron CG43867 - chrX_13_905001 chrX_905001 RAL-138 2525 chrX 1051054 1051087 chrX 1051157 1051190 23 100 14.5 14.5 14.5 1.5 136 chrX 1051054 intron CR44779 + chrX 1051122 intron CR44779 + chrX 1051190 intron CR44779 + chrX_23_1050001 chrX_1050001 RAL-138 2526 chrX 1253709 1253759 chrX 1253815 1253866 18 105 5.5 3.0 4.2 3.5 157 chrX 1253709 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253866 intron Atf3 - chrX_18_1250001 chrX_1250001 RAL-138 2527 chrX 1357758 1357804 chrX 1367952 1367999 Doc 18 10192 6.5 10.5 8.5 1.9 10241 chrX 1357758 intergenic png - chrX 1362878 intergenic not near genes chrX 1367999 intergenic not near genes chrX_18_1360001 chrX_1360001 RAL-138 2528 chrX 1428580 1428622 chrX 1428691 1428733 9 111 1.5 4.0 2.8 2.4 153 chrX 1428580 intron futsch + chrX 1428656 intron futsch + chrX 1428733 intron futsch + chrX_9_1425001 chrX_1425001 RAL-138 2529 chrX 1429591 1429638 chrX 1429694 1429717 6 96 4.0 1.5 2.8 1.6 126 chrX 1429591 intron futsch + chrX 1429654 intron futsch + chrX 1429717 intron futsch + chrX_6_1425001 chrX_1425001 RAL-138 2530 chrX 1518016 1518052 chrX 1523443 1523479 jockey 5 5427 3.0 3.5 3.2 1.2 5463 chrX 1518016 intergenic inc + chrX 1520748 intergenic not near genes chrX 1523479 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-138 2531 chrX 1518054 1518061 chrX 1523437 1523488 jockey 4 5416 2.0 3.5 2.8 1.1 5434 chrX 1518054 intergenic inc + chrX 1520771 intergenic not near genes chrX 1523488 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-138 2532 chrX 1554487 1554499 chrX 1554668 1554680 7 180 56.5 64.0 60.2 0.1 193 chrX 1554487 exon Mur2B - chrX 1554584 intron Mur2B - chrX 1554680 exon Mur2B - chrX_7_1550001 chrX_1550001 RAL-138 2533 chrX 1554501 1554531 chrX 1554667 1554673 20 165 61.5 63.5 62.5 0.3 172 chrX 1554501 exon Mur2B - chrX 1554587 intron Mur2B - chrX 1554673 exon Mur2B - chrX_20_1550001 chrX_1550001 RAL-138 2534 chrX 1554534 1554542 chrX 1554674 1554675 6 142 60.5 66.0 63.2 0.1 141 chrX 1554534 exon Mur2B - chrX 1554604 intron Mur2B - chrX 1554675 exon Mur2B - chrX_6_1550001 chrX_1550001 RAL-138 2535 chrX 1555361 1555368 chrX 1555481 1555488 6 120 101.0 79.0 90.0 0.1 127 chrX 1555361 exon Mur2B - chrX 1555424 exon Mur2B - chrX 1555488 exon Mur2B - chrX_6_1555001 chrX_1555001 RAL-138 2536 chrX 1555371 1555374 chrX 1555491 1555494 5 120 99.0 78.5 88.8 0.1 123 chrX 1555371 exon Mur2B - chrX 1555432 exon Mur2B - chrX 1555494 exon Mur2B - chrX_5_1555001 chrX_1555001 RAL-138 2537 chrX 1555376 1555414 chrX 1555478 1555497 31 116 80.0 78.5 79.2 0.4 121 chrX 1555376 exon Mur2B - chrX 1555436 exon Mur2B - chrX 1555497 exon Mur2B - chrX_31_1555001 chrX_1555001 RAL-138 2538 chrX 1586122 1586159 chrX 1586238 1586275 6 116 1.5 2.5 2.0 2.0 153 chrX 1586122 intron,intron Mur2B -,br + chrX 1586198 intron,intron Mur2B -,br + chrX 1586275 intron,intron Mur2B -,br + chrX_6_1585001 chrX_1585001 RAL-138 2539 chrX 1627966 1627996 chrX 1635441 1635470 gtwin 18 7483 15.0 12.5 13.8 1.2 7504 chrX 1627966 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_18_1630001 chrX_1630001 RAL-138 2540 chrX 1845714 1845740 chrX 1845839 1845862 7 124 11.5 6.5 9.0 0.7 148 chrX 1845714 intron CG42666 + chrX 1845788 intron CG42666 + chrX 1845862 intron CG42666 + chrX_7_1845001 chrX_1845001 RAL-138 2541 chrX 1930514 1930567 chrX 1938110 1938160 opus 15 7595 3.0 4.0 3.5 3.3 7646 chrX 1930514 3` UTR CG11596 + chrX 1934337 intergenic not near genes chrX 1938160 3` UTR CG3857 - chrX_15_1930001 chrX_1930001 RAL-138 2542 chrX 1954884 1954916 chrX 1962831 1962855 Stalker2 9 7940 8.5 7.5 8.0 1.0 7971 chrX 1954884 intron Hr4 + chrX 1958870 intron Hr4 + chrX 1962855 intron Hr4 + chrX_9_1955001 chrX_1955001 RAL-138 2543 chrX 2096343 2096382 chrX 2096461 2096474 11 114 5.0 4.0 4.5 2.0 131 chrX 2096343 intron csw + chrX 2096408 intron csw + chrX 2096474 intron csw + chrX_11_2095001 chrX_2095001 RAL-138 2544 chrX 2399824 2399866 chrX 2408188 2408232 roo 13 8357 4.5 0.0 2.2 4.1 8408 chrX 2399824 intergenic not near genes chrX 2404028 intergenic not near genes chrX 2408232 intergenic not near genes chrX_13_2400001 chrX_2400001 RAL-138 2545 chrX 2539250 2539280 chrX 2539496 2539526 7 246 1.0 4.5 2.8 1.8 276 chrX 2539250 intron trol - chrX 2539388 intron trol - chrX 2539526 intron trol - chrX_7_2535001 chrX_2535001 RAL-138 2546 chrX 2559335 2559386 chrX 2559448 2559499 14 111 2.0 4.0 3.0 3.5 164 chrX 2559335 intron Pdfr + chrX 2559417 intron Pdfr + chrX 2559499 intron Pdfr + chrX_14_2555001 chrX_2555001 RAL-138 2547 chrX 2578793 2578829 chrX 2578909 2578942 10 114 6.0 7.0 6.5 1.3 149 chrX 2578793 intergenic Pdfr +,Vha36-3 - chrX 2578868 intergenic Vha36-3 -,Pdfr + chrX 2578942 intergenic Vha36-3 -,Pdfr + chrX_10_2575001 chrX_2575001 RAL-138 2548 chrX 2578834 2578841 chrX 2578928 2578958 6 109 5.5 9.5 7.5 0.7 124 chrX 2578834 intergenic Pdfr +,Vha36-3 - chrX 2578896 intergenic Vha36-3 -,Pdfr + chrX 2578958 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-138 2549 chrX 2610363 2610413 chrX 2617505 2617555 HMS-Beagle 12 7142 11.0 6.0 8.5 1.3 7192 chrX 2610363 intergenic CG8636 - chrX 2613959 intergenic not near genes chrX 2617555 intergenic Tsp3A - chrX_12_2610001 chrX_2610001 RAL-138 2550 chrX 2635349 2635389 chrX 2635483 2635517 11 133 6.5 7.0 6.8 1.4 168 chrX 2635349 intron sgg + chrX 2635433 intron sgg + chrX 2635517 intron sgg + chrX_11_2635001 chrX_2635001 RAL-138 2551 chrX 2662141 2662194 chrX 2662265 2662291 12 118 3.0 3.0 3.0 3.0 150 chrX 2662141 intron sgg + chrX 2662216 intron sgg + chrX 2662291 intron sgg + chrX_12_2660001 chrX_2660001 RAL-138 2552 chrX 2664352 2664402 chrX 2665532 2665573 1360 5 1176 3.5 0.0 1.8 1.8 1221 chrX 2664352 intron sgg + chrX 2664962 intron sgg + chrX 2665573 intron sgg + chrX_5_2660001 chrX_2660001 RAL-138 2553 chrX 2756953 2756999 chrX 2757064 2757115 7 115 1.5 4.5 3.0 1.8 162 chrX 2756953 intron kirre + chrX 2757034 intron kirre + chrX 2757115 intron kirre + chrX_7_2755001 chrX_2755001 RAL-138 2554 chrX 2803477 2803521 chrX 2803644 2803689 11 166 3.5 0.5 2.0 3.7 212 chrX 2803477 intron kirre + chrX 2803583 intron kirre + chrX 2803689 intron kirre + chrX_11_2800001 chrX_2800001 RAL-138 2555 chrX 2838468 2838515 chrX 2838611 2838657 7 142 2.0 2.5 2.2 2.2 189 chrX 2838468 intron kirre + chrX 2838562 intron kirre + chrX 2838657 intron kirre + chrX_7_2835001 chrX_2835001 RAL-138 2556 chrX 2888088 2888144 chrX 2888189 2888247 15 103 6.0 5.0 5.5 2.3 159 chrX 2888088 intron kirre + chrX 2888168 intron kirre + chrX 2888247 intron kirre + chrX_15_2885001 chrX_2885001 RAL-138 2557 chrX 3058010 3058038 chrX 3058272 3058304 pogo 6 265 0.5 2.5 1.5 2.4 294 chrX 3058010 intron kirre + chrX 3058157 intron kirre + chrX 3058304 intron kirre + chrX_6_3055001 chrX_3055001 RAL-138 2558 chrX 3075633 3075664 chrX 3080964 3080994 Transpac 4 5331 2.0 4.5 3.2 1.0 5361 chrX 3075633 intron kirre + chrX 3078314 intron kirre + chrX 3080994 intron kirre + chrX_4_3075001 chrX_3075001 RAL-138 2559 chrX 3243623 3243658 chrX 3243738 3243773 9 115 8.0 5.0 6.5 1.2 150 chrX 3243623 intron dnc + chrX 3243698 intron dnc + chrX 3243773 intron dnc + chrX_9_3240001 chrX_3240001 RAL-138 2560 chrX 3278140 3278171 chrX 3278246 3278258 9 101 8.5 10.0 9.2 0.9 118 chrX 3278140 intron dnc + chrX 3278199 intron dnc + chrX 3278258 intron dnc + chrX_9_3275001 chrX_3275001 RAL-138 2561 chrX 3351779 3351812 chrX 3351890 3351922 4 106 7.5 7.0 7.2 0.5 143 chrX 3351779 intergenic not near genes chrX 3351850 intergenic not near genes chrX 3351922 intergenic not near genes chrX_4_3350001 chrX_3350001 RAL-138 2562 chrX 3408971 3409005 chrX 3409068 3409107 9 101 3.5 2.5 3.0 2.2 136 chrX 3408971 intron,intron CR44999 +,CG12535 - chrX 3409039 intron,intron CR44999 +,CG12535 - chrX 3409107 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-138 2563 chrX 3493087 3493113 chrX 3502266 3502296 roo 5 9183 2.5 1.5 2.0 1.7 9209 chrX 3493087 intron,intron CR44999 +,Gas8 - chrX 3497692 intron,intron CR44999 +,Gas8 - chrX 3502296 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-138 2564 chrX 3578277 3578289 chrX 3578401 3578440 4 132 3.5 4.0 3.8 0.8 163 chrX 3578277 intron AstA-R1 + chrX 3578358 intron AstA-R1 + chrX 3578440 intron AstA-R1 + chrX_4_3575001 chrX_3575001 RAL-138 2565 chrX 3597540 3597572 chrX 3619733 3619765 roo 4 22193 3.0 3.0 3.0 1.0 22225 chrX 3597540 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619765 intron AstA-R1 + chrX_4_3605001 chrX_3605001 RAL-138 2566 chrX 3726744 3726777 chrX 3730166 3730199 NOF 7 3422 3.5 0.0 1.8 2.5 3455 chrX 3726744 intron tlk + chrX 3728472 intron tlk + chrX 3730199 intron tlk + chrX_7_3725001 chrX_3725001 RAL-138 2567 chrX 3842336 3842347 chrX 3842579 3842590 pogo 4 243 2.5 1.0 1.8 1.4 254 chrX 3842336 intron ec + chrX 3842463 intron ec + chrX 3842590 intron ec + chrX_4_3840001 chrX_3840001 RAL-138 2568 chrX 3881247 3881297 chrX 3881411 3881461 12 164 4.5 4.5 4.5 2.2 214 chrX 3881247 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881461 exon VhaAC39-1 + chrX_12_3880001 chrX_3880001 RAL-138 2569 chrX 3899607 3899619 chrX 3899706 3899719 7 101 18.5 15.0 16.8 0.4 112 chrX 3899607 intron CG42541 - chrX 3899663 intron CG42541 - chrX 3899719 intron CG42541 - chrX_7_3895001 chrX_3895001 RAL-138 2570 chrX 3986839 3986893 chrX 3994497 3994551 412 13 7658 2.5 3.5 3.0 3.2 7712 chrX 3986839 intergenic not near genes chrX 3990695 intergenic not near genes chrX 3994551 intergenic not near genes chrX_13_3990001 chrX_3990001 RAL-138 2571 chrX 4067987 4067987 chrX 10754861 10754863 9 6686874 11.0 39.0 25.0 0.3 6686876 chrX 4067987 intergenic not near genes chrX 7411425 3` UTR CG42246 - chrX 10754863 intron Rph - chrX_9_7410001 chrX_7410001 RAL-138 2572 chrX 4101851 4101859 chrX 4101955 4101963 4 104 2.5 4.0 3.2 1.0 112 chrX 4101851 exon CG15375 + chrX 4101907 exon CG15375 + chrX 4101963 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-138 2573 chrX 4101860 4101897 chrX 4101949 4102002 10 100 0.5 3.5 2.0 3.3 142 chrX 4101860 exon CG15375 + chrX 4101931 exon CG15375 + chrX 4102002 exon CG15375 + chrX_10_4100001 chrX_4100001 RAL-138 2574 chrX 4132649 4132698 chrX 4132843 4132882 10 193 6.5 8.0 7.2 1.2 233 chrX 4132649 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132882 intergenic Fas2 -,GlcAT-I + chrX_10_4130001 chrX_4130001 RAL-138 2575 chrX 4157899 4157916 chrX 4164952 4164994 297 6 7074 1.0 2.5 1.8 2.1 7095 chrX 4157899 intron Fas2 - chrX 4161446 intron Fas2 - chrX 4164994 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-138 2576 chrX 4186822 4186822 chrX 4617441 4617446 5 430621 19.0 31.0 25.0 0.2 430624 chrX 4186822 intron Fas2 - chrX 4402134 intron CR32773 - chrX 4617446 intergenic peb + chrX_5_4400001 chrX_4400001 RAL-138 2577 chrX 4216316 4216336 chrX 4216420 4216424 4 100 3.5 1.5 2.5 1.1 108 chrX 4216316 intergenic not near genes chrX 4216370 intergenic not near genes chrX 4216424 intergenic CG15571 - chrX_4_4215001 chrX_4215001 RAL-138 2578 chrX 4324379 4324397 chrX 4324481 4324498 5 102 1.5 3.0 2.2 1.6 119 chrX 4324379 intron norpA + chrX 4324438 intron norpA + chrX 4324498 intron norpA + chrX_5_4320001 chrX_4320001 RAL-138 2579 chrX 4389377 4389380 chrX 12946233 12946235 13 8556857 2.0 11.0 6.5 1.7 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_13_8665001 chrX_8665001 RAL-138 2580 chrX 4396961 4397007 chrX 4397070 4397117 14 107 3.0 6.5 4.8 2.4 156 chrX 4396961 intron CR32773 - chrX 4397039 intron CR32773 - chrX 4397117 intron CR32773 - chrX_14_4395001 chrX_4395001 RAL-138 2581 chrX 4415282 4415331 chrX 4415383 4415432 13 99 5.5 5.5 5.5 2.0 150 chrX 4415282 intron,intron CR32773 -,bi + chrX 4415357 intron,intron CR32773 -,bi + chrX 4415432 intron,intron CR32773 -,bi + chrX_13_4415001 chrX_4415001 RAL-138 2582 chrX 4455427 4455450 chrX 4455534 4455557 4 107 2.5 2.5 2.5 1.1 130 chrX 4455427 intron,intron CR32773 -,bi + chrX 4455492 intron,intron CR32773 -,bi + chrX 4455557 intron,intron CR32773 -,bi + chrX_4_4455001 chrX_4455001 RAL-138 2583 chrX 4515193 4515226 chrX 4515294 4515326 8 99 0.5 7.5 4.0 1.6 133 chrX 4515193 intron CR32773 - chrX 4515260 intron CR32773 - chrX 4515326 intron CR32773 - chrX_8_4515001 chrX_4515001 RAL-138 2584 chrX 4638623 4638666 chrX 4638778 4638828 43 155 11.0 6.5 8.8 4.4 205 chrX 4638623 exon pon + chrX 4638726 3` UTR pon + chrX 4638828 3` UTR pon + chrX_43_4635001 chrX_4635001 RAL-138 2585 chrX 4660805 4660823 chrX 4660929 4660947 7 124 10.5 0.0 5.2 1.1 142 chrX 4660805 intron CG3009 - chrX 4660876 intron CG3009 - chrX 4660947 intron CG3009 - chrX_7_4660001 chrX_4660001 RAL-138 2586 chrX 4700376 4700424 chrX 4700744 4700792 jockey 14 366 6.0 6.5 6.2 1.9 416 chrX 4700376 3` UTR ctp + chrX 4700584 3` UTR ctp + chrX 4700792 3` UTR ctp + chrX_14_4700001 chrX_4700001 RAL-138 2587 chrX 4723548 4723586 chrX 4723653 4723658 20 99 20.5 9.0 14.8 1.3 110 chrX 4723548 exon Proc-R + chrX 4723603 intron Proc-R + chrX 4723658 intron Proc-R + chrX_20_4720001 chrX_4720001 RAL-138 2588 chrX 4792359 4792404 chrX 4792817 4792840 jockey 14 456 1.5 6.5 4.0 2.8 481 chrX 4792359 intergenic not near genes chrX 4792600 intergenic not near genes chrX 4792840 intergenic not near genes chrX_14_4790001 chrX_4790001 RAL-138 2589 chrX 4827993 4827995 chrX 4835338 4835340 Stalker4 5 7365 3.5 3.5 3.5 1.1 7347 chrX 4827993 intergenic not near genes chrX 4831666 intergenic not near genes chrX 4835340 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-138 2590 chrX 4856124 4856140 chrX 4856227 4856239 5 102 10.5 0.5 5.5 0.8 115 chrX 4856124 intron CG42594 + chrX 4856182 intron CG42594 + chrX 4856239 intron CG42594 + chrX_5_4855001 chrX_4855001 RAL-138 2591 chrX 5096266 5096283 chrX 5103856 5103870 springer 5 7589 6.0 3.0 4.5 0.9 7604 chrX 5096266 intron,intron CG15465 +,rg + chrX 5100068 intron,intron CG15465 +,rg + chrX 5103870 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-138 2592 chrX 5096286 5096304 chrX 5103874 5103893 springer 6 7589 4.0 4.5 4.2 1.2 7607 chrX 5096286 intron,intron CG15465 +,rg + chrX 5100090 intron,intron CG15465 +,rg + chrX 5103893 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-138 2593 chrX 5323052 5323092 chrX 5323338 5323394 4 298 4.0 0.0 2.0 1.3 342 chrX 5323052 intergenic Rnp4F - chrX 5323223 intergenic not near genes chrX 5323394 intergenic Mcm3 + chrX_4_5320001 chrX_5320001 RAL-138 2594 chrX 5338684 5338739 chrX 5339962 5339985 jockey 10 1271 3.5 3.0 3.2 2.4 1301 chrX 5338684 intergenic not near genes chrX 5339334 intergenic not near genes chrX 5339985 intergenic SK + chrX_10_5335001 chrX_5335001 RAL-138 2595 chrX 5349253 5349309 chrX 5349355 5349411 22 102 2.0 4.0 3.0 5.5 158 chrX 5349253 intron SK + chrX 5349332 intron SK + chrX 5349411 intron SK + chrX_22_5345001 chrX_5345001 RAL-138 2596 chrX 5512029 5512033 chrX 5512137 5512140 4 108 1.5 0.0 0.8 2.2 111 chrX 5512029 intergenic not near genes chrX 5512084 intergenic not near genes chrX 5512140 intergenic not near genes chrX_4_5510001 chrX_5510001 RAL-138 2597 chrX 5524819 5524852 chrX 5528703 5528740 412 6 3885 6.5 0.5 3.5 1.3 3921 chrX 5524819 intergenic snoRNA:Psi28S-3342 - chrX 5526780 intergenic not near genes chrX 5528740 intergenic Vsx2 - chrX_6_5525001 chrX_5525001 RAL-138 2598 chrX 5727399 5727412 chrX 5732163 5732176 Doc 5 4764 11.5 2.5 7.0 0.6 4777 chrX 5727399 intron CG32758 - chrX 5729788 intron CG32758 - chrX 5732176 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-138 2599 chrX 5827982 5828015 chrX 21251109 21251143 4 15423128 9.0 19.0 14.0 0.3 15423161 chrX 5827982 intron CG15765 + chrX 13539562 intergenic not near genes chrX 21251143 intron,5` UTR CG32521 -,CG1722 - chrX_4_13535001 chrX_13535001 RAL-138 2600 chrX 5883784 5883819 chrX 5884049 5884085 pogo 9 266 11.0 3.0 7.0 1.1 301 chrX 5883784 intron CR45668 - chrX 5883934 intron CR45668 - chrX 5884085 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-138 2601 chrX 5884145 5884189 chrX 5884410 5884455 pogo 11 266 4.5 3.5 4.0 2.2 310 chrX 5884145 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884455 intron CR45668 - chrX_11_5880001 chrX_5880001 RAL-138 2602 chrX 5938445 5938501 chrX 5938556 5938595 21 107 8.5 7.5 8.0 2.3 150 chrX 5938445 intron CG3726 + chrX 5938520 intron CG3726 + chrX 5938595 5` UTR CG3726 + chrX_21_5935001 chrX_5935001 RAL-138 2603 chrX 6003268 6003284 chrX 6003371 6003390 10 105 7.0 7.5 7.2 1.2 122 chrX 6003268 intron CR44498 + chrX 6003329 intron CR44498 + chrX 6003390 intron CR44498 + chrX_10_6000001 chrX_6000001 RAL-138 2604 chrX 6003286 6003312 chrX 6003368 6003418 6 102 1.0 7.5 4.2 1.2 132 chrX 6003286 intron CR44498 + chrX 6003352 intron CR44498 + chrX 6003418 intron CR44498 + chrX_6_6000001 chrX_6000001 RAL-138 2605 chrX 6093294 6093328 chrX 6093391 6093432 12 100 4.0 4.5 4.2 2.3 138 chrX 6093294 intron Nep1 + chrX 6093363 intron Nep1 + chrX 6093432 intron Nep1 + chrX_12_6090001 chrX_6090001 RAL-138 2606 chrX 6118674 6118726 chrX 6118781 6118831 17 105 4.5 4.0 4.2 3.3 157 chrX 6118674 intron Ca-alpha1T - chrX 6118752 intron Ca-alpha1T - chrX 6118831 intron Ca-alpha1T - chrX_17_6115001 chrX_6115001 RAL-138 2607 chrX 6171566 6171580 chrX 6179024 6179038 Quasimodo 4 7458 8.5 5.0 6.8 0.5 7472 chrX 6171566 intron Ca-alpha1T - chrX 6175302 intron Ca-alpha1T - chrX 6179038 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-138 2608 chrX 6171587 6171598 chrX 6179018 6179048 Quasimodo 5 7444 6.5 4.0 5.2 0.8 7461 chrX 6171587 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179048 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-138 2609 chrX 6215504 6215526 chrX 6215609 6215616 9 103 5.5 6.0 5.8 1.3 112 chrX 6215504 intergenic not near genes chrX 6215560 intergenic not near genes chrX 6215616 intergenic not near genes chrX_9_6215001 chrX_6215001 RAL-138 2610 chrX 6335220 6335241 chrX 6337755 6337776 Tirant 11 2535 0.0 11.0 5.5 1.7 2556 chrX 6335220 intergenic not near genes chrX 6336498 intergenic not near genes chrX 6337776 5` UTR CG3842 + chrX_11_6335001 chrX_6335001 RAL-138 2611 chrX 6375213 6375265 chrX 6375444 6375494 5 226 2.5 4.5 3.5 1.1 281 chrX 6375213 intergenic not near genes chrX 6375354 intergenic not near genes chrX 6375494 intergenic not near genes chrX_5_6375001 chrX_6375001 RAL-138 2612 chrX 6392856 6392876 chrX 6397641 6397666 Doc 5 4789 5.5 4.0 4.8 0.9 4810 chrX 6392856 intergenic not near genes chrX 6395261 intergenic not near genes chrX 6397666 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-138 2613 chrX 6404822 6404869 chrX 6404974 6405021 17 151 4.0 4.0 4.0 3.4 199 chrX 6404822 intergenic not near genes chrX 6404922 intergenic not near genes chrX 6405021 intergenic not near genes chrX_17_6400001 chrX_6400001 RAL-138 2614 chrX 6487954 6487981 chrX 6488061 6488088 11 107 6.5 7.5 7.0 1.4 134 chrX 6487954 intron CG42340 - chrX 6488021 intron CG42340 - chrX 6488088 intron CG42340 - chrX_11_6485001 chrX_6485001 RAL-138 2615 chrX 6562797 6562848 chrX 6571304 6571355 Tirant 10 8500 3.5 6.5 5.0 1.7 8558 chrX 6562797 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571355 intron CG34417 + chrX_10_6565001 chrX_6565001 RAL-138 2616 chrX 6591835 6591870 chrX 6591945 6591979 5 110 3.5 0.0 1.8 1.8 144 chrX 6591835 intron Pat1 + chrX 6591907 intron Pat1 + chrX 6591979 intron Pat1 + chrX_5_6590001 chrX_6590001 RAL-138 2617 chrX 6618444 6618464 chrX 6618546 6618567 10 102 8.0 13.5 10.8 0.8 123 chrX 6618444 intron pigs + chrX 6618506 intron pigs + chrX 6618567 intron pigs + chrX_10_6615001 chrX_6615001 RAL-138 2618 chrX 6618469 6618475 chrX 6618545 6618578 4 96 5.5 13.5 9.5 0.4 109 chrX 6618469 intron pigs + chrX 6618524 intron pigs + chrX 6618578 intron pigs + chrX_4_6615001 chrX_6615001 RAL-138 2619 chrX 6733426 6733666 chrX 6733529 6733779 11 110 6.0 9.0 7.5 1.3 353 chrX 6733426 intron,intron CG3168 -,CR43461 + chrX 6733602 intron,intron CG3168 -,CR43461 + chrX 6733779 intron,intron CG3168 -,CR43461 + chrX_11_6730001 chrX_6730001 RAL-138 2620 chrX 6812031 6812051 chrX 6812149 6812166 9 117 9.5 6.0 7.8 1.0 135 chrX 6812031 3` UTR pod1 + chrX 6812098 3` UTR pod1 + chrX 6812166 3` UTR pod1 + chrX_9_6810001 chrX_6810001 RAL-138 2621 chrX 6812056 6812084 chrX 6812146 6812183 9 108 3.5 5.0 4.2 1.7 127 chrX 6812056 3` UTR pod1 + chrX 6812120 3` UTR pod1 + chrX 6812183 3` UTR pod1 + chrX_9_6810001 chrX_6810001 RAL-138 2622 chrX 6814254 6814267 chrX 6814365 6814379 4 110 2.0 0.0 1.0 2.0 125 chrX 6814254 exon iav + chrX 6814316 intron iav + chrX 6814379 intron iav + chrX_4_6810001 chrX_6810001 RAL-138 2623 chrX 6859538 6859558 chrX 6859976 6859986 8 437 8.0 1.0 4.5 1.5 448 chrX 6859538 intron CG14434 - chrX 6859762 intron CG14434 - chrX 6859986 intron CG14434 - chrX_8_6855001 chrX_6855001 RAL-138 2624 chrX 6897573 6897705 chrX 6897676 6897840 14 130 0.0 0.0 0.0 14.0 267 chrX 6897573 intergenic not near genes chrX 6897706 intergenic not near genes chrX 6897840 intergenic not near genes chrX_14_6895001 chrX_6895001 RAL-138 2625 chrX 6901355 6901386 chrX 6901456 6901486 5 100 2.5 3.5 3.0 1.2 131 chrX 6901355 intergenic not near genes chrX 6901420 intergenic not near genes chrX 6901486 intergenic not near genes chrX_5_6900001 chrX_6900001 RAL-138 2626 chrX 6989479 6989527 chrX 6989591 6989639 5 112 0.5 1.0 0.8 2.8 160 chrX 6989479 intron ogre - chrX 6989559 intron ogre - chrX 6989639 intron ogre - chrX_5_6985001 chrX_6985001 RAL-138 2627 chrX 7023589 7023630 chrX 7031003 7031044 Tabor 13 7414 2.0 1.0 1.5 5.2 7455 chrX 7023589 intron CG12541 - chrX 7027316 intron CG12541 - chrX 7031044 intron CG12541 - chrX_13_7025001 chrX_7025001 RAL-138 2628 chrX 7069780 7069833 chrX 7069884 7069939 11 101 1.5 4.0 2.8 2.9 159 chrX 7069780 5` UTR CG4607 + chrX 7069860 5` UTR CG4607 + chrX 7069939 5` UTR CG4607 + chrX_11_7065001 chrX_7065001 RAL-138 2629 chrX 7570632 7570656 chrX 7570790 7570815 5 159 1.0 1.5 1.2 2.3 183 chrX 7570632 intergenic not near genes chrX 7570724 intergenic not near genes chrX 7570815 intergenic not near genes chrX_5_7570001 chrX_7570001 RAL-138 2630 chrX 7702883 7702926 chrX 7703347 7703390 jockey 7 463 2.5 2.0 2.2 2.2 507 chrX 7702883 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703390 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-138 2631 chrX 7705515 7705544 chrX 7705622 7705651 5 107 0.0 2.5 1.2 2.3 136 chrX 7705515 intron CHES-1-like - chrX 7705583 intron CHES-1-like - chrX 7705651 intron CHES-1-like - chrX_5_7705001 chrX_7705001 RAL-138 2632 chrX 7845720 7845748 chrX 7847222 7847264 hopper2 4 1512 5.5 1.5 3.5 0.9 1544 chrX 7845720 intergenic not near genes chrX 7846492 intergenic not near genes chrX 7847264 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-138 2633 chrX 7881825 7881876 chrX 7881933 7881983 10 107 2.5 4.0 3.2 2.4 158 chrX 7881825 intergenic Ir7f -,Ir7e - chrX 7881904 intergenic Ir7f -,Ir7e - chrX 7881983 3` UTR Ir7f - chrX_10_7880001 chrX_7880001 RAL-138 2634 chrX 7978958 7978992 chrX 7979069 7979103 12 111 4.0 9.5 6.8 1.5 145 chrX 7978958 intron sn + chrX 7979030 intron sn + chrX 7979103 intron sn + chrX_12_7975001 chrX_7975001 RAL-138 2635 chrX 8066580 8066598 chrX 8066694 8066712 4 113 0.0 2.5 1.2 1.8 132 chrX 8066580 intron mys + chrX 8066646 intron mys + chrX 8066712 intron mys + chrX_4_8065001 chrX_8065001 RAL-138 2636 chrX 8079908 8079934 chrX 8080028 8080069 11 133 6.0 2.5 4.2 2.1 161 chrX 8079908 exon CG2254 - chrX 8079988 intron CG2254 - chrX 8080069 intron CG2254 - chrX_11_8075001 chrX_8075001 RAL-138 2637 chrX 8092268 8092319 chrX 8092378 8092429 11 110 5.0 2.5 3.8 2.3 161 chrX 8092268 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092429 intron Ubc-E2H - chrX_11_8090001 chrX_8090001 RAL-138 2638 chrX 8232141 8232165 chrX 8232243 8232266 7 101 19.5 16.0 17.8 0.4 125 chrX 8232141 intron sdt + chrX 8232204 intron sdt + chrX 8232266 intron sdt + chrX_7_8230001 chrX_8230001 RAL-138 2639 chrX 8331925 8331974 chrX 8332070 8332118 8 144 2.0 2.5 2.2 2.5 193 chrX 8331925 intron nAChRalpha3 - chrX 8332022 intron nAChRalpha3 - chrX 8332118 intron nAChRalpha3 - chrX_8_8330001 chrX_8330001 RAL-138 2640 chrX 8364836 8364875 chrX 8365258 8365297 BS 15 422 3.5 6.5 5.0 2.5 461 chrX 8364836 intron nAChRalpha3 - chrX 8365066 intron nAChRalpha3 - chrX 8365297 intron nAChRalpha3 - chrX_15_8365001 chrX_8365001 RAL-138 2641 chrX 8392564 8392571 chrX 8392666 8392672 5 102 10.0 9.5 9.8 0.5 108 chrX 8392564 intergenic not near genes chrX 8392618 intergenic not near genes chrX 8392672 intergenic not near genes chrX_5_8390001 chrX_8390001 RAL-138 2642 chrX 8509093 8509148 chrX 8509195 8509250 7 102 1.5 2.5 2.0 2.3 157 chrX 8509093 intron CG33181 + chrX 8509172 intron CG33181 + chrX 8509250 intron CG33181 + chrX_7_8505001 chrX_8505001 RAL-138 2643 chrX 8533096 8533145 chrX 8533214 8533264 10 119 1.0 2.5 1.8 3.6 168 chrX 8533096 intron Nrg + chrX 8533180 intron Nrg + chrX 8533264 intron Nrg + chrX_10_8530001 chrX_8530001 RAL-138 2644 chrX 8536736 8536780 chrX 8536837 8536881 8 101 3.5 3.5 3.5 1.8 145 chrX 8536736 intron Nrg + chrX 8536808 intron Nrg + chrX 8536881 intron Nrg + chrX_8_8535001 chrX_8535001 RAL-138 2645 chrX 8544134 8544154 chrX 8544238 8544258 4 104 2.0 1.5 1.8 1.4 124 chrX 8544134 intron Nrg + chrX 8544196 intron Nrg + chrX 8544258 intron Nrg + chrX_4_8540001 chrX_8540001 RAL-138 2646 chrX 8708690 8708732 chrX 8708848 8708890 20 160 41.0 35.5 38.2 0.5 200 chrX 8708690 intergenic not near genes chrX 8708790 intergenic not near genes chrX 8708890 intergenic not near genes chrX_20_8705001 chrX_8705001 RAL-138 2647 chrX 8727375 8727414 chrX 8727477 8727516 6 102 3.0 3.0 3.0 1.5 141 chrX 8727375 intergenic not near genes chrX 8727446 intergenic not near genes chrX 8727516 intergenic not near genes chrX_6_8725001 chrX_8725001 RAL-138 2648 chrX 8787469 8787486 chrX 8787590 8787594 4 118 7.5 6.0 6.8 0.5 125 chrX 8787469 intron Lim1 - chrX 8787532 intron Lim1 - chrX 8787594 intron Lim1 - chrX_4_8785001 chrX_8785001 RAL-138 2649 chrX 8787491 8787498 chrX 8787582 8787600 5 101 3.5 5.0 4.2 1.0 109 chrX 8787491 intron Lim1 - chrX 8787546 intron Lim1 - chrX 8787600 intron Lim1 - chrX_5_8785001 chrX_8785001 RAL-138 2650 chrX 8794102 8794148 chrX 8794198 8794252 16 102 4.5 3.5 4.0 3.2 150 chrX 8794102 intron Lim1 - chrX 8794177 intron Lim1 - chrX 8794252 intron Lim1 - chrX_16_8790001 chrX_8790001 RAL-138 2651 chrX 8802781 8802829 chrX 8803263 8803309 17 474 3.5 1.5 2.5 4.9 528 chrX 8802781 intron Lim1 - chrX 8803045 intron Lim1 - chrX 8803309 intron Lim1 - chrX_17_8800001 chrX_8800001 RAL-138 2652 chrX 8887053 8887081 chrX 8887156 8887184 7 103 0.0 2.5 1.2 3.2 131 chrX 8887053 intron Moe - chrX 8887118 intron Moe - chrX 8887184 intron Moe - chrX_7_8885001 chrX_8885001 RAL-138 2653 chrX 8888614 8888662 chrX 8888716 8888764 8 101 5.0 5.5 5.2 1.3 150 chrX 8888614 intron Moe - chrX 8888689 intron Moe - chrX 8888764 intron Moe - chrX_8_8885001 chrX_8885001 RAL-138 2654 chrX 8892386 8892409 chrX 8892490 8892512 15 102 5.5 5.5 5.5 2.3 126 chrX 8892386 intron Moe - chrX 8892449 intron Moe - chrX 8892512 intron Moe - chrX_15_8890001 chrX_8890001 RAL-138 2655 chrX 8894978 8894994 chrX 8895089 8895105 10 111 3.0 3.0 3.0 2.5 127 chrX 8894978 intron Moe - chrX 8895042 intron Moe - chrX 8895105 intron Moe - chrX_10_8895001 chrX_8895001 RAL-138 2656 chrX 8922308 8922358 chrX 8922767 8922816 jockey 19 457 3.0 5.5 4.2 3.7 508 chrX 8922308 intron rdgA + chrX 8922562 intron rdgA + chrX 8922816 intron rdgA + chrX_19_8920001 chrX_8920001 RAL-138 2657 chrX 9152055 9152109 chrX 9152163 9152217 24 107 8.0 4.5 6.2 3.3 162 chrX 9152055 intergenic dalao +,His3.3B - chrX 9152136 intergenic dalao +,His3.3B - chrX 9152217 intergenic dalao +,His3.3B - chrX_24_9150001 chrX_9150001 RAL-138 2658 chrX 9218056 9218077 chrX 9218172 9218193 7 116 5.5 1.5 3.5 1.6 137 chrX 9218056 3` UTR t - chrX 9218124 3` UTR t - chrX 9218193 3` UTR t - chrX_7_9215001 chrX_9215001 RAL-138 2659 chrX 9272996 9273044 chrX 9273102 9273150 23 106 6.5 6.5 6.5 3.1 154 chrX 9272996 intergenic Cfp1 -,CG16892 + chrX 9273073 intergenic Cfp1 -,CG16892 + chrX 9273150 intergenic Cfp1 -,CG16892 + chrX_23_9270001 chrX_9270001 RAL-138 2660 chrX 9337922 9337935 chrX 9338033 9338045 7 115 19.0 13.0 16.0 0.4 123 chrX 9337922 intron CG34449 - chrX 9337984 intron CG34449 - chrX 9338045 intron CG34449 - chrX_7_9335001 chrX_9335001 RAL-138 2661 chrX 9337936 9337973 chrX 9338032 9338083 28 110 7.5 12.0 9.8 2.6 147 chrX 9337936 intron CG34449 - chrX 9338010 intron CG34449 - chrX 9338083 exon CG34449 - chrX_28_9335001 chrX_9335001 RAL-138 2662 chrX 9391547 9391601 chrX 9391718 9391769 18 171 1.5 5.0 3.2 4.3 222 chrX 9391547 intron mgl - chrX 9391658 intron mgl - chrX 9391769 intron mgl - chrX_18_9390001 chrX_9390001 RAL-138 2663 chrX 9410209 9410259 chrX 9410313 9410345 4 92 3.0 4.0 3.5 0.9 136 chrX 9410209 intron mgl - chrX 9410277 intron mgl - chrX 9410345 intron mgl - chrX_4_9410001 chrX_9410001 RAL-138 2664 chrX 9508115 9508162 chrX 9509658 9509704 jockey 42 1542 6.0 9.0 7.5 4.9 1589 chrX 9508115 intron CG32700 - chrX 9508910 intron CG32700 - chrX 9509704 intron CG32700 - chrX_42_9505001 chrX_9505001 RAL-138 2665 chrX 9531635 9531671 chrX 9531740 9531776 7 104 1.0 0.0 0.5 4.7 141 chrX 9531635 intron CG32700 - chrX 9531706 intron CG32700 - chrX 9531776 intron CG32700 - chrX_7_9530001 chrX_9530001 RAL-138 2666 chrX 9575775 9575820 chrX 9576114 9576168 mdg3 10 343 4.5 5.0 4.8 1.7 393 chrX 9575775 intron,exon CG32699 -,CG42395 - chrX 9575972 intron,intron CG32699 -,CG42395 - chrX 9576168 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-138 2667 chrX 9761332 9761354 chrX 9761435 9761457 4 103 2.5 0.0 1.2 1.8 125 chrX 9761332 intergenic not near genes chrX 9761394 intergenic not near genes chrX 9761457 intergenic not near genes chrX_4_9760001 chrX_9760001 RAL-138 2668 chrX 9839318 9839367 chrX 9839419 9839474 5 105 0.0 0.5 0.2 4.2 156 chrX 9839318 intron CG32698 + chrX 9839396 intron CG32698 + chrX 9839474 intron CG32698 + chrX_5_9835001 chrX_9835001 RAL-138 2669 chrX 9912073 9912095 chrX 9912182 9912224 6 125 0.0 5.5 2.8 1.6 151 chrX 9912073 intergenic not near genes chrX 9912148 intergenic not near genes chrX 9912224 intergenic not near genes chrX_6_9910001 chrX_9910001 RAL-138 2670 chrX 9990057 9990071 chrX 9990158 9990172 10 101 4.5 13.5 9.0 1.0 115 chrX 9990057 intron CG32694 + chrX 9990114 intron CG32694 + chrX 9990172 intron CG32694 + chrX_10_9990001 chrX_9990001 RAL-138 2671 chrX 10111102 10111148 chrX 10111297 10111343 7 194 2.5 5.0 3.8 1.5 241 chrX 10111102 intron RhoU + chrX 10111222 intron RhoU + chrX 10111343 intron RhoU + chrX_7_10110001 chrX_10110001 RAL-138 2672 chrX 10138194 10138248 chrX 10145723 10145776 412 4 7529 3.5 0.0 1.8 1.4 7582 chrX 10138194 intron,intron RhoU +,CR44894 - chrX 10141985 intron,intron RhoU +,CR44894 - chrX 10145776 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-138 2673 chrX 10154263 10154305 chrX 10154364 10154406 7 101 2.0 3.0 2.5 2.0 143 chrX 10154263 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154406 intron,exon CR44894 -,CG12645 + chrX_7_10150001 chrX_10150001 RAL-138 2674 chrX 10267300 10267323 chrX 10276475 10276498 roo 5 9175 0.5 4.0 2.2 1.6 9198 chrX 10267300 3` UTR alpha-Man-I - chrX 10271899 intron alpha-Man-I - chrX 10276498 3` UTR alpha-Man-I - chrX_5_10270001 chrX_10270001 RAL-138 2675 chrX 10317532 10317581 chrX 10317635 10317684 8 103 0.0 0.0 0.0 8.0 152 chrX 10317532 intron alpha-Man-I - chrX 10317608 intron alpha-Man-I - chrX 10317684 intron alpha-Man-I - chrX_8_10315001 chrX_10315001 RAL-138 2676 chrX 10348780 10348806 chrX 10356368 10356390 springer 5 7587 4.0 4.0 4.0 1.0 7610 chrX 10348780 intergenic snoRNA:U3:9B + chrX 10352585 intergenic not near genes chrX 10356390 intergenic l(1)G0289 - chrX_5_10350001 chrX_10350001 RAL-138 2677 chrX 10361690 10361737 chrX 10361812 10361859 14 121 1.5 1.5 1.5 5.6 169 chrX 10361690 intron l(1)G0289 - chrX 10361774 intron l(1)G0289 - chrX 10361859 intron l(1)G0289 - chrX_14_10360001 chrX_10360001 RAL-138 2678 chrX 10369082 10369127 chrX 10369274 10369319 32 187 6.5 4.5 5.5 4.9 237 chrX 10369082 intron CG17841 + chrX 10369200 intron CG17841 + chrX 10369319 intron CG17841 + chrX_32_10365001 chrX_10365001 RAL-138 2679 chrX 10401372 10401430 chrX 10401478 10401520 13 105 1.5 1.0 1.2 5.9 148 chrX 10401372 intron flw + chrX 10401446 intron flw + chrX 10401520 intron flw + chrX_13_10400001 chrX_10400001 RAL-138 2680 chrX 10428922 10428979 chrX 10429135 10429192 9 213 0.0 2.5 1.2 4.1 270 chrX 10428922 intron CG32683 - chrX 10429057 intron CG32683 - chrX 10429192 intron CG32683 - chrX_9_10425001 chrX_10425001 RAL-138 2681 chrX 10506476 10506527 chrX 10506588 10506622 10 106 3.0 3.5 3.2 2.4 146 chrX 10506476 intron spri - chrX 10506549 intron spri - chrX 10506622 intron spri - chrX_10_10505001 chrX_10505001 RAL-138 2682 chrX 10532482 10532502 chrX 10532585 10532606 7 104 8.0 4.0 6.0 1.0 124 chrX 10532482 intron spri - chrX 10532544 intron spri - chrX 10532606 intron spri - chrX_7_10530001 chrX_10530001 RAL-138 2683 chrX 10550309 10550363 chrX 10550412 10550466 5 103 1.5 0.5 1.0 2.5 157 chrX 10550309 intron spri - chrX 10550388 intron spri - chrX 10550466 intron spri - chrX_5_10550001 chrX_10550001 RAL-138 2684 chrX 10550857 10550884 chrX 10552327 10552341 hobo 5 1476 2.0 3.0 2.5 1.4 1484 chrX 10550857 intron spri - chrX 10551599 intron spri - chrX 10552341 intron spri - chrX_5_10550001 chrX_10550001 RAL-138 2685 chrX 10719131 10719143 chrX 10719240 10719252 6 109 0.0 6.5 3.2 1.4 121 chrX 10719131 intron CG32676 - chrX 10719192 intron CG32676 - chrX 10719252 intron CG32676 - chrX_6_10715001 chrX_10715001 RAL-138 2686 chrX 10772652 10772695 chrX 10772760 10772800 Tirant 20 104 7.0 4.5 5.8 2.9 148 chrX 10772652 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772800 intron CG15211 + chrX_20_10770001 chrX_10770001 RAL-138 2687 chrX 11069142 11069176 chrX 11069310 11069344 8 168 2.5 3.0 2.8 2.1 202 chrX 11069142 intergenic not near genes chrX 11069243 intergenic not near genes chrX 11069344 intergenic not near genes chrX_8_11065001 chrX_11065001 RAL-138 2688 chrX 11095982 11096017 chrX 11103109 11103144 HMS-Beagle 10 7127 5.0 6.0 5.5 1.5 7162 chrX 11095982 intergenic not near genes chrX 11099563 intergenic not near genes chrX 11103144 intron CG42249 + chrX_10_11095001 chrX_11095001 RAL-138 2689 chrX 11109417 11109417 chrX 12946233 12946235 27 1836817 24.5 11.0 17.8 1.4 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_27_12025001 chrX_12025001 RAL-138 2690 chrX 11184226 11184268 chrX 11189327 11189368 flea 5 5097 4.0 2.0 3.0 1.2 5142 chrX 11184226 intergenic not near genes chrX 11186797 intergenic not near genes chrX 11189368 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-138 2691 chrX 11191874 11191914 chrX 11191977 11192017 6 103 1.5 1.5 1.5 2.4 143 chrX 11191874 intergenic not near genes chrX 11191946 intergenic not near genes chrX 11192017 intergenic not near genes chrX_6_11190001 chrX_11190001 RAL-138 2692 chrX 11205268 11205316 chrX 11205369 11205417 21 101 4.5 5.0 4.8 3.6 149 chrX 11205268 intergenic not near genes chrX 11205342 intergenic not near genes chrX 11205417 intergenic not near genes chrX_21_11205001 chrX_11205001 RAL-138 2693 chrX 11228242 11228249 chrX 11228335 11228351 4 100 9.5 15.0 12.2 0.3 109 chrX 11228242 intron CG44422 - chrX 11228296 intron CG44422 - chrX 11228351 intron CG44422 - chrX_4_11225001 chrX_11225001 RAL-138 2694 chrX 11254147 11254193 chrX 11254279 11254329 9 135 5.0 4.0 4.5 1.6 182 chrX 11254147 intron CG44422 - chrX 11254238 intron CG44422 - chrX 11254329 intron CG44422 - chrX_9_11250001 chrX_11250001 RAL-138 2695 chrX 11268538 11268586 chrX 11270056 11270062 hopper2 4 1506 5.0 0.0 2.5 1.1 1524 chrX 11268538 intron CG44422 - chrX 11269300 intron CG44422 - chrX 11270062 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-138 2696 chrX 11312066 11312094 chrX 11319410 11319435 Stalker2 5 7350 2.0 1.5 1.8 1.8 7369 chrX 11312066 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319435 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-138 2697 chrX 11338489 11338497 chrX 11338599 11338616 4 117 0.0 11.5 5.8 0.6 127 chrX 11338489 intron Kap3 - chrX 11338552 intron Kap3 - chrX 11338616 intron Kap3 - chrX_4_11335001 chrX_11335001 RAL-138 2698 chrX 11558258 11558278 chrX 11558367 11558387 6 109 5.5 0.0 2.8 1.6 129 chrX 11558258 intron CG1572 - chrX 11558322 intron CG1572 - chrX 11558387 intron CG1572 - chrX_6_11555001 chrX_11555001 RAL-138 2699 chrX 11633401 11633444 chrX 11640480 11640523 297 6 7079 2.0 2.5 2.2 1.9 7122 chrX 11633401 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640523 intron Ptp10D + chrX_6_11635001 chrX_11635001 RAL-138 2700 chrX 11651174 11651205 chrX 11651290 11651321 5 111 1.0 2.0 1.5 2.0 147 chrX 11651174 intron Ptp10D + chrX 11651248 intron Ptp10D + chrX 11651321 intron Ptp10D + chrX_5_11650001 chrX_11650001 RAL-138 2701 chrX 11719855 11719888 chrX 11719960 11719993 12 105 4.0 4.5 4.2 2.3 138 chrX 11719855 3` UTR prtp + chrX 11719924 intergenic prtp +,Tango10 + chrX 11719993 intergenic prtp +,Tango10 + chrX_12_11715001 chrX_11715001 RAL-138 2702 chrX 11833816 11833832 chrX 11833911 11833935 6 101 8.5 10.5 9.5 0.6 119 chrX 11833816 intron rudhira + chrX 11833876 intron rudhira + chrX 11833935 intron rudhira + chrX_6_11830001 chrX_11830001 RAL-138 2703 chrX 12168114 12168132 chrX 12173581 12173599 I-element 5 5467 4.5 1.0 2.8 1.3 5485 chrX 12168114 intron Ten-a + chrX 12170856 intron Ten-a + chrX 12173599 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-138 2704 chrX 12191572 12191581 chrX 12191685 12191694 4 113 3.0 4.5 3.8 0.8 122 chrX 12191572 intron Ten-a + chrX 12191633 intron Ten-a + chrX 12191694 intron Ten-a + chrX_4_12190001 chrX_12190001 RAL-138 2705 chrX 12202744 12202801 chrX 12202853 12202910 9 109 3.5 4.0 3.8 1.9 166 chrX 12202744 intron Ten-a + chrX 12202827 intron Ten-a + chrX 12202910 intron Ten-a + chrX_9_12200001 chrX_12200001 RAL-138 2706 chrX 12301941 12301976 chrX 12303264 12303291 X-element 6 1315 2.5 1.0 1.8 2.1 1350 chrX 12301941 intron Ten-a + chrX 12302616 intron Ten-a + chrX 12303291 intron Ten-a + chrX_6_12300001 chrX_12300001 RAL-138 2707 chrX 12375465 12375499 chrX 12375588 12375622 12 122 4.5 1.5 3.0 3.0 157 chrX 12375465 intergenic Ir11a - chrX 12375544 intergenic Ir11a - chrX 12375622 exon Ir11a - chrX_12_12375001 chrX_12375001 RAL-138 2708 chrX 12463121 12463163 chrX 12463222 12463264 16 101 5.0 4.0 4.5 2.9 143 chrX 12463121 intergenic Rab40 -,CG42258 + chrX 12463192 intergenic Rab40 -,CG42258 + chrX 12463264 intergenic Rab40 -,CG42258 + chrX_16_12460001 chrX_12460001 RAL-138 2709 chrX 12465449 12465478 chrX 12465550 12465578 23 100 7.5 0.0 3.8 4.8 129 chrX 12465449 exon CG42258 + chrX 12465514 intron CG42258 + chrX 12465578 intron CG42258 + chrX_23_12465001 chrX_12465001 RAL-138 2710 chrX 12469882 12469915 chrX 12470008 12470042 4 127 3.5 2.0 2.8 1.1 160 chrX 12469882 intron CG42258 + chrX 12469962 intron CG42258 + chrX 12470042 intron CG42258 + chrX_4_12465001 chrX_12465001 RAL-138 2711 chrX 9845361 9845361 chrX 12546495 12546496 gypsy5 4 2701135 36.5 18.0 27.2 0.1 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_4_11195001 chrX_11195001 RAL-138 2712 chrX 12677221 12677226 chrX 12677303 12677332 4 97 1.5 8.0 4.8 0.7 111 chrX 12677221 intron Tis11 + chrX 12677276 intron Tis11 + chrX 12677332 intron Tis11 + chrX_4_12675001 chrX_12675001 RAL-138 2713 chrX 12677228 12677243 chrX 12677302 12677323 7 94 1.5 8.0 4.8 1.2 95 chrX 12677228 intron Tis11 + chrX 12677276 intron Tis11 + chrX 12677323 intron Tis11 + chrX_7_12675001 chrX_12675001 RAL-138 2714 chrX 12837583 12837633 chrX 12837888 12837939 15 305 3.0 2.0 2.5 4.3 356 chrX 12837583 intron Pde9 - chrX 12837761 intron Pde9 - chrX 12837939 intron Pde9 - chrX_15_12835001 chrX_12835001 RAL-138 2715 chrX 4389377 4389380 chrX 12946234 12946234 4 8556856 2.0 11.0 6.5 0.5 8556857 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946234 3` UTR fne + chrX_4_8665001 chrX_8665001 RAL-138 2716 chrX 12946235 12946235 chrX 16632147 16632149 5 3685913 10.0 5.5 7.8 0.6 3685914 chrX 12946235 3` UTR fne + chrX 14789192 3` UTR rut - chrX 16632149 intron,5` UTR Rok -,CG9777 - chrX_5_14785001 chrX_14785001 RAL-138 2717 chrX 12946235 12946235 chrX 19355850 19355850 7 6409615 10.0 1.0 5.5 1.1 6409615 chrX 12946235 3` UTR fne + chrX 16151042 intergenic not near genes chrX 19355850 intron kek5 + chrX_7_16150001 chrX_16150001 RAL-138 2718 chrX 13099105 13099138 chrX 13099223 13099256 5 118 0.0 7.5 3.8 1.0 151 chrX 13099105 intron CG43313 - chrX 13099180 intron CG43313 - chrX 13099256 intron CG43313 - chrX_5_13095001 chrX_13095001 RAL-138 2719 chrX 13146570 13146624 chrX 13146683 13146737 5 113 1.5 3.0 2.2 1.6 167 chrX 13146570 intron CG32645 + chrX 13146654 intron CG32645 + chrX 13146737 intron CG32645 + chrX_5_13145001 chrX_13145001 RAL-138 2720 chrX 13172346 13172375 chrX 13172446 13172476 5 101 1.5 3.5 2.5 1.4 130 chrX 13172346 exon CG34411 - chrX 13172411 intron CG34411 - chrX 13172476 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-138 2721 chrX 13262652 13262687 chrX 13262762 13262797 5 110 3.0 3.0 3.0 1.2 145 chrX 13262652 intergenic HDAC4 -,comt + chrX 13262724 3` UTR HDAC4 - chrX 13262797 3` UTR HDAC4 - chrX_5_13260001 chrX_13260001 RAL-138 2722 chrX 13278125 13278168 chrX 13278233 13278273 10 108 4.5 1.5 3.0 2.5 148 chrX 13278125 intron HDAC4 - chrX 13278199 intron HDAC4 - chrX 13278273 intron HDAC4 - chrX_10_13275001 chrX_13275001 RAL-138 2723 chrX 13374814 13374862 chrX 13374918 13374965 6 104 4.0 3.0 3.5 1.3 151 chrX 13374814 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374965 intron CG1640 + chrX_6_13370001 chrX_13370001 RAL-138 2724 chrX 13401463 13401518 chrX 13401840 13401895 jockey 6 377 2.0 1.0 1.5 2.4 432 chrX 13401463 intergenic CG1673 +,CG12725 - chrX 13401679 intergenic CG12725 -,CG1673 + chrX 13401895 3` UTR CG12725 - chrX_6_13400001 chrX_13400001 RAL-138 2725 chrX 13409162 13409173 chrX 13409263 13409283 5 109 8.5 3.5 6.0 0.7 121 chrX 13409162 3` UTR GstT4 + chrX 13409222 3` UTR GstT4 + chrX 13409283 3` UTR GstT4 + chrX_5_13405001 chrX_13405001 RAL-138 2726 chrX 13409179 13409207 chrX 13409261 13409318 18 109 6.0 3.0 4.5 3.3 139 chrX 13409179 3` UTR GstT4 + chrX 13409248 3` UTR GstT4 + chrX 13409318 3` UTR GstT4 + chrX_18_13405001 chrX_13405001 RAL-138 2727 chrX 13429445 13429480 chrX 13430619 13430654 jockey 16 1174 7.0 9.5 8.2 1.7 1209 chrX 13429445 intergenic not near genes chrX 13430050 intergenic not near genes chrX 13430654 intergenic not near genes chrX_16_13430001 chrX_13430001 RAL-138 2728 chrX 13442459 13442492 chrX 13442645 13442678 9 186 2.0 2.0 2.0 3.0 219 chrX 13442459 intergenic not near genes chrX 13442568 intergenic not near genes chrX 13442678 intergenic not near genes chrX_9_13440001 chrX_13440001 RAL-138 2729 chrX 13463624 13463676 chrX 13469226 13469278 mdg3 9 5602 3.5 2.5 3.0 2.2 5654 chrX 13463624 intron Neto + chrX 13466451 intron Neto + chrX 13469278 intron Neto + chrX_9_13465001 chrX_13465001 RAL-138 2730 chrX 13734086 13734093 chrX 13734205 13734214 5 120 10.5 11.0 10.8 0.4 128 chrX 13734086 intron g - chrX 13734150 intron g - chrX 13734214 intron g - chrX_5_13730001 chrX_13730001 RAL-138 2731 chrX 13734095 13734110 chrX 13734196 13734228 11 106 6.5 8.5 7.5 1.3 133 chrX 13734095 intron g - chrX 13734162 intron g - chrX 13734228 intron g - chrX_11_13730001 chrX_13730001 RAL-138 2732 chrX 13791130 13791180 chrX 13791306 13791356 6 176 4.0 0.0 2.0 2.0 226 chrX 13791130 intron inaE + chrX 13791243 intron inaE + chrX 13791356 intron inaE + chrX_6_13790001 chrX_13790001 RAL-138 2733 chrX 13934271 13934318 chrX 13934379 13934426 13 108 5.0 6.0 5.5 2.0 155 chrX 13934271 intron mamo - chrX 13934348 intron mamo - chrX 13934426 intron mamo - chrX_13_13930001 chrX_13930001 RAL-138 2734 chrX 13935490 13935526 chrX 13935598 13935634 22 107 9.5 14.5 12.0 1.7 144 chrX 13935490 intron mamo - chrX 13935562 intron mamo - chrX 13935634 intron mamo - chrX_22_13935001 chrX_13935001 RAL-138 2735 chrX 13937956 13938003 chrX 13941252 13941299 I-element 10 3295 2.5 3.5 3.0 2.5 3343 chrX 13937956 intron mamo - chrX 13939628 intron mamo - chrX 13941299 intron mamo - chrX_10_13935001 chrX_13935001 RAL-138 2736 chrX 14064147 14064166 chrX 14064269 14064288 4 122 0.0 3.5 1.8 1.4 141 chrX 14064147 intergenic not near genes chrX 14064218 intergenic not near genes chrX 14064288 intergenic not near genes chrX_4_14060001 chrX_14060001 RAL-138 2737 chrX 14105016 14105049 chrX 14114192 14114225 roo 10 9175 2.0 2.5 2.2 3.1 9209 chrX 14105016 intergenic not near genes chrX 14109620 intergenic not near genes chrX 14114225 5` UTR CR44657 + chrX_10_14105001 chrX_14105001 RAL-138 2738 chrX 14139181 14139215 chrX 14139288 14139305 8 107 1.0 9.0 5.0 1.3 124 chrX 14139181 intergenic not near genes chrX 14139243 intergenic not near genes chrX 14139305 intergenic not near genes chrX_8_14135001 chrX_14135001 RAL-138 2739 chrX 14214812 14214835 chrX 14214893 14214936 9 96 1.0 2.5 1.8 3.2 124 chrX 14214812 intron l(1)G0007 + chrX 14214874 intron l(1)G0007 + chrX 14214936 intron l(1)G0007 + chrX_9_14210001 chrX_14210001 RAL-138 2740 chrX 14369584 14369627 chrX 14369721 14369764 7 136 3.5 4.0 3.8 1.5 180 chrX 14369584 intron dpr8 + chrX 14369674 intron dpr8 + chrX 14369764 intron dpr8 + chrX_7_14365001 chrX_14365001 RAL-138 2741 chrX 14407253 14407274 chrX 14407360 14407380 5 107 1.5 0.0 0.8 2.8 127 chrX 14407253 intron dpr8 + chrX 14407316 intron dpr8 + chrX 14407380 intron dpr8 + chrX_5_14405001 chrX_14405001 RAL-138 2742 chrX 14413801 14413846 chrX 14413920 14413965 9 116 1.0 2.0 1.5 3.6 164 chrX 14413801 intron dpr8 + chrX 14413883 intron dpr8 + chrX 14413965 intron dpr8 + chrX_9_14410001 chrX_14410001 RAL-138 2743 chrX 14516178 14516211 chrX 14516284 14516317 5 104 2.5 1.5 2.0 1.7 139 chrX 14516178 intergenic not near genes chrX 14516248 intergenic not near genes chrX 14516317 intergenic not near genes chrX_5_14515001 chrX_14515001 RAL-138 2744 chrX 14572878 14572910 chrX 14572968 14572989 4 86 2.0 3.5 2.8 1.1 111 chrX 14572878 intergenic not near genes chrX 14572934 intergenic not near genes chrX 14572989 intergenic not near genes chrX_4_14570001 chrX_14570001 RAL-138 2745 chrX 14597728 14597747 chrX 14597818 14597849 5 98 5.0 2.0 3.5 1.1 121 chrX 14597728 intron CG9413 - chrX 14597788 intron CG9413 - chrX 14597849 intron CG9413 - chrX_5_14595001 chrX_14595001 RAL-138 2746 chrX 14714024 14714065 chrX 14714131 14714172 8 107 0.5 3.5 2.0 2.7 148 chrX 14714024 intron NetB - chrX 14714098 intron NetB - chrX 14714172 intron NetB - chrX_8_14710001 chrX_14710001 RAL-138 2747 chrX 14767945 14767977 chrX 14768025 14768082 13 103 5.0 0.0 2.5 3.7 137 chrX 14767945 intergenic not near genes chrX 14768014 intergenic not near genes chrX 14768082 intergenic not near genes chrX_13_14765001 chrX_14765001 RAL-138 2748 chrX 14818748 14818798 chrX 14823966 14824005 copia 13 5222 2.0 2.5 2.2 4.1 5257 chrX 14818748 intron rut - chrX 14821376 intron rut - chrX 14824005 intron rut - chrX_13_14820001 chrX_14820001 RAL-138 2749 chrX 14883594 14883614 chrX 14883695 14883715 4 101 2.5 0.0 1.2 1.8 121 chrX 14883594 intron Flo2 + chrX 14883654 intron Flo2 + chrX 14883715 intron Flo2 + chrX_4_14880001 chrX_14880001 RAL-138 2750 chrX 14897817 14897843 chrX 14897926 14897952 12 109 2.0 11.0 6.5 1.6 135 chrX 14897817 intron Flo2 + chrX 14897884 intron Flo2 + chrX 14897952 intron Flo2 + chrX_12_14895001 chrX_14895001 RAL-138 2751 chrX 14936841 14936886 chrX 14946123 14946168 roo 14 9282 5.5 4.5 5.0 2.3 9327 chrX 14936841 intron pdgy - chrX 14941504 intron pdgy - chrX 14946168 intron pdgy - chrX_14_14940001 chrX_14940001 RAL-138 2752 chrX 14968055 14968085 chrX 14968159 14968189 4 104 0.0 6.0 3.0 1.0 134 chrX 14968055 intron eag + chrX 14968122 intron eag + chrX 14968189 intron eag + chrX_4_14965001 chrX_14965001 RAL-138 2753 chrX 14981737 14981740 chrX 14981841 14981844 4 104 2.5 5.0 3.8 0.8 107 chrX 14981737 intron eag + chrX 14981790 intron eag + chrX 14981844 intron eag + chrX_4_14980001 chrX_14980001 RAL-138 2754 chrX 15199692 15199724 chrX 15199805 15199837 6 113 2.5 3.5 3.0 1.5 145 chrX 15199692 intergenic not near genes chrX 15199764 intergenic not near genes chrX 15199837 intergenic not near genes chrX_6_15195001 chrX_15195001 RAL-138 2755 chrX 15248263 15248270 chrX 15248343 15248371 6 88 3.0 1.0 2.0 2.0 108 chrX 15248263 intergenic not near genes chrX 15248317 intergenic not near genes chrX 15248371 intergenic not near genes chrX_6_15245001 chrX_15245001 RAL-138 2756 chrX 15326710 15326718 chrX 15326933 15326941 I-element 4 223 1.5 4.5 3.0 1.0 231 chrX 15326710 3` UTR Top1 + chrX 15326826 3` UTR Top1 + chrX 15326941 3` UTR Top1 + chrX_4_15325001 chrX_15325001 RAL-138 2757 chrX 15369805 15369823 chrX 15369913 15369931 7 107 6.5 3.0 4.8 1.2 126 chrX 15369805 intron acj6 - chrX 15369868 intron acj6 - chrX 15369931 intron acj6 - chrX_7_15365001 chrX_15365001 RAL-138 2758 chrX 15413029 15413067 chrX 15417355 15417394 Juan 17 4323 10.5 10.5 10.5 1.5 4365 chrX 15413029 intron Cngl - chrX 15415212 intron Cngl - chrX 15417394 intron Cngl - chrX_17_15415001 chrX_15415001 RAL-138 2759 chrX 15413070 15413086 chrX 15417354 15417391 Juan 6 4308 7.0 10.5 8.8 0.6 4321 chrX 15413070 intron Cngl - chrX 15415230 intron Cngl - chrX 15417391 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-138 2760 chrX 15519772 15519825 chrX 15519875 15519907 35 100 6.0 8.5 7.2 4.3 135 chrX 15519772 intron Ac13E - chrX 15519840 intron Ac13E - chrX 15519907 intron Ac13E - chrX_35_15515001 chrX_15515001 RAL-138 2761 chrX 15565617 15565657 chrX 15565728 15565768 6 111 2.5 1.5 2.0 2.0 151 chrX 15565617 intergenic not near genes chrX 15565692 intergenic not near genes chrX 15565768 intergenic not near genes chrX_6_15565001 chrX_15565001 RAL-138 2762 chrX 15589429 15589455 chrX 15589620 15589659 13 202 8.5 13.0 10.8 1.1 230 chrX 15589429 intron CG9220 - chrX 15589544 intron CG9220 - chrX 15589659 exon CG9220 - chrX_13_15585001 chrX_15585001 RAL-138 2763 chrX 15591185 15591206 chrX 15591286 15591307 4 101 0.0 5.5 2.8 1.1 122 chrX 15591185 intron CG9220 - chrX 15591246 intron CG9220 - chrX 15591307 intron CG9220 - chrX_4_15590001 chrX_15590001 RAL-138 2764 chrX 15678013 15678068 chrX 15678116 15678166 22 101 1.5 6.5 4.0 4.4 153 chrX 15678013 intergenic CG12708 + chrX 15678090 intergenic CG12708 + chrX 15678166 intergenic CG12708 + chrX_22_15675001 chrX_15675001 RAL-138 2765 chrX 15681369 15681407 chrX 15681476 15681514 5 106 1.0 0.5 0.8 2.8 145 chrX 15681369 intergenic not near genes chrX 15681442 intergenic not near genes chrX 15681514 intergenic not near genes chrX_5_15680001 chrX_15680001 RAL-138 2766 chrX 15821762 15821767 chrX 15821894 15821900 6 133 14.5 7.5 11.0 0.5 138 chrX 15821762 intron sd + chrX 15821831 intron sd + chrX 15821900 intron sd + chrX_6_15820001 chrX_15820001 RAL-138 2767 chrX 15821768 15821770 chrX 15821883 15821903 4 128 14.5 7.5 11.0 0.3 135 chrX 15821768 intron sd + chrX 15821836 intron sd + chrX 15821903 intron sd + chrX_4_15820001 chrX_15820001 RAL-138 2768 chrX 15821771 15821803 chrX 15821877 15821936 28 128 3.5 7.0 5.2 4.5 165 chrX 15821771 intron sd + chrX 15821854 intron sd + chrX 15821936 intron sd + chrX_28_15820001 chrX_15820001 RAL-138 2769 chrX 16222755 16222798 chrX 16231129 16231173 roo 8 8375 2.5 0.0 1.2 3.6 8418 chrX 16222755 intergenic not near genes chrX 16226964 intergenic not near genes chrX 16231173 intergenic not near genes chrX_8_16225001 chrX_16225001 RAL-138 2770 chrX 16295509 16295528 chrX 16295618 16295637 4 109 7.0 0.0 3.5 0.9 128 chrX 16295509 intron CG9911 - chrX 16295573 intron CG9911 - chrX 16295637 intron CG9911 - chrX_4_16295001 chrX_16295001 RAL-138 2771 chrX 16340642 16340695 chrX 16349822 16349877 roo 5 9181 0.0 4.0 2.0 1.7 9235 chrX 16340642 intergenic Dsp1 + chrX 16345260 intergenic not near genes chrX 16349877 intergenic sl + chrX_5_16345001 chrX_16345001 RAL-138 2772 chrX 16492621 16492671 chrX 16498223 16498272 mdg3 8 5602 2.5 1.5 2.0 2.7 5651 chrX 16492621 intron para - chrX 16495446 intron para - chrX 16498272 exon para - chrX_8_16495001 chrX_16495001 RAL-138 2773 chrX 16525246 16525443 chrX 16525356 16525615 17 139 3.0 4.0 3.5 3.8 369 chrX 16525246 intron,5` UTR para -,Cnx14D - chrX 16525430 intron para - chrX 16525615 intron para - chrX_17_16525001 chrX_16525001 RAL-138 2774 chrX 16623464 16623489 chrX 16623573 16623586 6 108 5.0 0.0 2.5 1.7 122 chrX 16623464 intergenic not near genes chrX 16623525 intergenic Rok - chrX 16623586 intergenic Rok - chrX_6_16620001 chrX_16620001 RAL-138 2775 chrX 16650902 16650937 chrX 16651004 16651033 11 101 9.0 0.5 4.8 1.9 131 chrX 16650902 intergenic CG32573 +,CG42512 + chrX 16650968 intergenic CG32573 +,CG42512 + chrX 16651033 intergenic CG32573 +,CG42512 + chrX_11_16650001 chrX_16650001 RAL-138 2776 chrX 15785500 15785507 chrX 16786903 16786909 4 1001402 9.0 7.0 8.0 0.4 1001409 chrX 15785500 5` UTR Paf-AHalpha - chrX 16286204 intron CG32576 - chrX 16786909 5` UTR CG9609 - chrX_4_16285001 chrX_16285001 RAL-138 2777 chrX 16906627 16906674 chrX 16906739 16906785 5 112 1.0 1.0 1.0 2.5 158 chrX 16906627 intron CR44754 - chrX 16906706 intron CR44754 - chrX 16906785 intron CR44754 - chrX_5_16905001 chrX_16905001 RAL-138 2778 chrX 16935989 16936033 chrX 16936418 16936476 jockey 18 440 8.5 7.0 7.8 2.0 487 chrX 16935989 intron CG4928 + chrX 16936232 intron CG4928 + chrX 16936476 intron CG4928 + chrX_18_16935001 chrX_16935001 RAL-138 2779 chrX 16951295 16951355 chrX 16951400 16951400 39 86 10.0 14.5 12.2 3.0 105 chrX 16951295 exon RhoGAP15B + chrX 16951348 exon RhoGAP15B + chrX 16951400 exon RhoGAP15B + chrX_39_16950001 chrX_16950001 RAL-138 2780 chrX 17011954 17011997 chrX 17012062 17012105 6 96 1.0 3.5 2.2 1.9 151 chrX 17011954 intron CG45002 - chrX 17012030 intron CG45002 - chrX 17012105 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-138 2781 chrX 17063158 17063201 chrX 17063269 17063313 10 112 2.5 0.5 1.5 4.0 155 chrX 17063158 intron CG45002 - chrX 17063236 intron CG45002 - chrX 17063313 intron CG45002 - chrX_10_17060001 chrX_17060001 RAL-138 2782 chrX 12946234 12946235 chrX 17107687 17107687 4 4161452 10.0 19.5 14.8 0.3 4161453 chrX 12946234 3` UTR fne + chrX 15026960 intron,intron hiw -,be + chrX 17107687 5` UTR CG5004 + chrX_4_15025001 chrX_15025001 RAL-138 2783 chrX 17195181 17195231 chrX 17200292 17200342 flea 23 5111 8.5 6.5 7.5 2.7 5161 chrX 17195181 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200342 3` UTR baz + chrX_23_17195001 chrX_17195001 RAL-138 2784 chrX 17205829 17205854 chrX 17205944 17205969 14 115 4.5 12.0 8.2 1.5 140 chrX 17205829 intergenic not near genes chrX 17205899 intergenic not near genes chrX 17205969 intergenic CG32564 + chrX_14_17205001 chrX_17205001 RAL-138 2785 chrX 17229930 17229936 chrX 17230058 17230064 6 128 6.0 4.0 5.0 1.0 134 chrX 17229930 intergenic CG10597 - chrX 17229997 intergenic CG10597 - chrX 17230064 intergenic CG10597 - chrX_6_17225001 chrX_17225001 RAL-138 2786 chrX 17237521 17237531 chrX 17237630 17237635 4 108 1.0 3.0 2.0 1.3 114 chrX 17237521 intron f + chrX 17237578 intron f + chrX 17237635 intron f + chrX_4_17235001 chrX_17235001 RAL-138 2787 chrX 17352576 17352621 chrX 17352695 17352749 8 126 0.0 2.0 1.0 4.0 173 chrX 17352576 intergenic not near genes chrX 17352662 intergenic not near genes chrX 17352749 intergenic not near genes chrX_8_17350001 chrX_17350001 RAL-138 2788 chrX 17434417 17434433 chrX 17434534 17434551 5 118 2.5 0.0 1.2 2.3 134 chrX 17434417 intron CG12994 - chrX 17434484 intron CG12994 - chrX 17434551 intron CG12994 - chrX_5_17430001 chrX_17430001 RAL-138 2789 chrX 17443099 17443105 chrX 17443248 17443254 4 149 6.0 0.0 3.0 1.0 155 chrX 17443099 intron CG12994 - chrX 17443176 intron CG12994 - chrX 17443254 intron CG12994 - chrX_4_17440001 chrX_17440001 RAL-138 2790 chrX 17546949 17547002 chrX 17547107 17547159 6 158 2.5 2.0 2.2 1.9 210 chrX 17546949 intron CG43658 - chrX 17547054 intron CG43658 - chrX 17547159 intron CG43658 - chrX_6_17545001 chrX_17545001 RAL-138 2791 chrX 17680895 17680924 chrX 17680969 17681026 11 95 4.0 5.5 4.8 1.9 131 chrX 17680895 intron chas - chrX 17680960 intron chas - chrX 17681026 intron chas - chrX_11_17680001 chrX_17680001 RAL-138 2792 chrX 17685447 17685471 chrX 17685555 17685579 8 108 2.0 2.0 2.0 2.7 132 chrX 17685447 intron chas - chrX 17685513 intron chas - chrX 17685579 intron chas - chrX_8_17685001 chrX_17685001 RAL-138 2793 chrX 17708807 17708858 chrX 17708908 17708962 14 102 4.0 10.0 7.0 1.8 155 chrX 17708807 intron CG8173 - chrX 17708884 intron CG8173 - chrX 17708962 intron CG8173 - chrX_14_17705001 chrX_17705001 RAL-138 2794 chrX 17716577 17716595 chrX 17716680 17716706 7 108 3.5 1.5 2.5 2.0 129 chrX 17716577 intron CG42684 + chrX 17716642 intron CG42684 + chrX 17716706 intron CG42684 + chrX_7_17715001 chrX_17715001 RAL-138 2795 chrX 17740379 17740404 chrX 17740451 17740506 6 87 3.0 2.0 2.5 1.7 127 chrX 17740379 intron CG42684 + chrX 17740442 intron CG42684 + chrX 17740506 intron CG42684 + chrX_6_17740001 chrX_17740001 RAL-138 2796 chrX 17741314 17741359 chrX 17741485 17741530 4 171 0.5 2.0 1.2 1.8 216 chrX 17741314 intron CG42684 + chrX 17741422 intron CG42684 + chrX 17741530 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-138 2797 chrX 17792943 17792972 chrX 17796257 17796293 flea 5 3319 2.0 4.0 3.0 1.2 3350 chrX 17792943 intron OdsH + chrX 17794618 intron OdsH + chrX 17796293 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-138 2798 chrX 17943501 17943518 chrX 17943612 17943629 5 111 4.0 7.0 5.5 0.8 128 chrX 17943501 intron Sh - chrX 17943565 intron Sh - chrX 17943629 intron Sh - chrX_5_17940001 chrX_17940001 RAL-138 2799 chrX 17965696 17965731 chrX 17965798 17965833 5 102 1.5 0.0 0.8 2.8 137 chrX 17965696 intron Sh - chrX 17965764 intron Sh - chrX 17965833 intron Sh - chrX_5_17965001 chrX_17965001 RAL-138 2800 chrX 18020794 18020847 chrX 18020906 18020959 12 112 3.0 4.0 3.5 2.7 165 chrX 18020794 intron Sh - chrX 18020876 intron Sh - chrX 18020959 intron Sh - chrX_12_18020001 chrX_18020001 RAL-138 2801 chrX 18122795 18122850 chrX 18122896 18122951 32 100 6.5 7.0 6.8 4.1 156 chrX 18122795 5` UTR CR45606 + chrX 18122873 5` UTR CR45606 + chrX 18122951 intergenic CR45606 + chrX_32_18120001 chrX_18120001 RAL-138 2802 chrX 18126790 18126832 chrX 18126892 18126934 6 102 3.0 2.0 2.5 1.7 144 chrX 18126790 intron CG32553 - chrX 18126862 5` UTR CG32553 - chrX 18126934 intron CG32553 - chrX_6_18125001 chrX_18125001 RAL-138 2803 chrX 18194051 18194094 chrX 18194611 18194624 BS 6 554 3.5 2.5 3.0 1.5 573 chrX 18194051 intron Frq2 + chrX 18194338 intron Frq2 + chrX 18194624 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-138 2804 chrX 18196246 18196261 chrX 18196901 18196915 4 654 8.0 2.0 5.0 0.7 669 chrX 18196246 intron Frq2 + chrX 18196580 intron Frq2 + chrX 18196915 intron Frq2 + chrX_4_18195001 chrX_18195001 RAL-138 2805 chrX 18257006 18257052 chrX 18257123 18257172 11 110 7.0 9.0 8.0 1.2 166 chrX 18257006 3` UTR CR45613 - chrX 18257089 3` UTR CR45613 - chrX 18257172 3` UTR CR45613 - chrX_11_18255001 chrX_18255001 RAL-138 2806 chrX 18429470 18429519 chrX 18434806 18434855 Transpac 15 5335 4.0 9.5 6.8 1.9 5385 chrX 18429470 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434855 intergenic not near genes chrX_15_18430001 chrX_18430001 RAL-138 2807 chrX 18453610 18453617 chrX 18453672 18453678 4 73 9.5 8.0 8.8 0.4 68 chrX 18453610 intron CG32547 - chrX 18453644 intron CG32547 - chrX 18453678 intron CG32547 - chrX_4_18450001 chrX_18450001 RAL-138 2808 chrX 18543087 18543118 chrX 18543193 18543219 9 105 6.0 4.5 5.2 1.5 132 chrX 18543087 intron Bx + chrX 18543153 intron Bx + chrX 18543219 intron Bx + chrX_9_18540001 chrX_18540001 RAL-138 2809 chrX 18555374 18555408 chrX 18556920 18556955 transib2 6 1546 1.0 6.0 3.5 1.3 1581 chrX 18555374 intron Bx + chrX 18556164 intron Bx + chrX 18556955 intron Bx + chrX_6_18555001 chrX_18555001 RAL-138 2810 chrX 18558758 18558802 chrX 18558865 18558909 12 107 1.0 4.5 2.8 3.2 151 chrX 18558758 intron Bx + chrX 18558834 intron Bx + chrX 18558909 intron Bx + chrX_12_18555001 chrX_18555001 RAL-138 2811 chrX 12946233 12946235 chrX 18572525 18572527 18 5626291 10.0 30.5 20.2 0.8 5626294 chrX 12946233 3` UTR fne + chrX 15759380 intron Graf - chrX 18572527 intergenic not near genes chrX_18_15755001 chrX_15755001 RAL-138 2812 chrX 18574772 18574823 chrX 18574877 18574928 28 105 2.0 5.5 3.8 5.8 156 chrX 18574772 intergenic not near genes chrX 18574850 intergenic not near genes chrX 18574928 intergenic not near genes chrX_28_18570001 chrX_18570001 RAL-138 2813 chrX 18644999 18645008 chrX 18645122 18645128 4 122 13.0 5.0 9.0 0.4 129 chrX 18644999 intron Rip11 - chrX 18645064 intron Rip11 - chrX 18645128 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-138 2814 chrX 18645010 18645046 chrX 18645114 18645168 16 121 4.5 2.5 3.5 3.6 158 chrX 18645010 intron Rip11 - chrX 18645089 intron Rip11 - chrX 18645168 intron Rip11 - chrX_16_18645001 chrX_18645001 RAL-138 2815 chrX 18671197 18671248 chrX 18671304 18671355 13 104 4.0 4.5 4.2 2.5 158 chrX 18671197 intergenic not near genes chrX 18671276 intergenic not near genes chrX 18671355 intergenic not near genes chrX_13_18670001 chrX_18670001 RAL-138 2816 chrX 18698830 18698837 chrX 18698972 18698979 5 141 11.5 7.5 9.5 0.5 149 chrX 18698830 intergenic not near genes chrX 18698904 intergenic not near genes chrX 18698979 intergenic not near genes chrX_5_18695001 chrX_18695001 RAL-138 2817 chrX 18698838 18698878 chrX 18698969 18699020 12 138 4.5 5.5 5.0 2.0 182 chrX 18698838 intergenic not near genes chrX 18698929 intergenic not near genes chrX 18699020 intergenic not near genes chrX_12_18695001 chrX_18695001 RAL-138 2818 chrX 18754320 18754344 chrX 18758012 18758036 297 7 3692 3.0 3.0 3.0 1.8 3716 chrX 18754320 intergenic not near genes chrX 18756178 intergenic not near genes chrX 18758036 intergenic not near genes chrX_7_18755001 chrX_18755001 RAL-138 2819 chrX 18896496 18896549 chrX 18896632 18896685 15 136 1.0 3.0 2.0 5.0 189 chrX 18896496 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896685 intergenic CG7349 + chrX_15_18895001 chrX_18895001 RAL-138 2820 chrX 18946166 18946179 chrX 18946278 18946291 4 112 3.0 4.5 3.8 0.8 125 chrX 18946166 intron CG43759 + chrX 18946228 intron CG43759 + chrX 18946291 intron CG43759 + chrX_4_18945001 chrX_18945001 RAL-138 2821 chrX 18947481 18947533 chrX 18947599 18947651 7 118 3.5 2.0 2.8 1.8 170 chrX 18947481 intron CG43759 + chrX 18947566 intron CG43759 + chrX 18947651 intron CG43759 + chrX_7_18945001 chrX_18945001 RAL-138 2822 chrX 18957050 18957072 chrX 18965731 18965748 roo 4 8680 3.0 0.0 1.5 1.6 8698 chrX 18957050 intron CG43759 + chrX 18961399 intron CG43759 + chrX 18965748 intron CG43759 + chrX_4_18960001 chrX_18960001 RAL-138 2823 chrX 19060388 19060436 chrX 19065197 19065245 Doc 17 4809 6.5 9.0 7.8 1.9 4857 chrX 19060388 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065245 intron CG14190 + chrX_17_19060001 chrX_19060001 RAL-138 2824 chrX 19073683 19073692 chrX 19073795 19073804 5 112 0.5 4.5 2.5 1.4 121 chrX 19073683 intergenic not near genes chrX 19073744 intergenic not near genes chrX 19073804 intergenic not near genes chrX_5_19070001 chrX_19070001 RAL-138 2825 chrX 19080304 19080354 chrX 19080435 19080482 17 131 5.5 5.5 5.5 2.6 178 chrX 19080304 intergenic not near genes chrX 19080393 intergenic not near genes chrX 19080482 intergenic not near genes chrX_17_19080001 chrX_19080001 RAL-138 2826 chrX 19084067 19084123 chrX 19084212 19084268 5 142 1.0 0.5 0.8 2.8 201 chrX 19084067 intergenic CR45503 + chrX 19084168 intergenic CR45503 + chrX 19084268 intergenic CR45503 + chrX_5_19080001 chrX_19080001 RAL-138 2827 chrX 19098737 19098754 chrX 19098839 19098856 4 102 0.0 2.0 1.0 2.0 119 chrX 19098737 intergenic not near genes chrX 19098796 intergenic not near genes chrX 19098856 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-138 2828 chrX 19125659 19125696 chrX 19125767 19125790 9 107 11.5 7.5 9.5 0.9 131 chrX 19125659 intron tgy - chrX 19125724 intron tgy - chrX 19125790 intron tgy - chrX_9_19125001 chrX_19125001 RAL-138 2829 chrX 19136546 19136580 chrX 19143472 19143524 412 12 6940 5.0 1.0 3.0 3.0 6978 chrX 19136546 intergenic not near genes chrX 19140035 intergenic not near genes chrX 19143524 3` UTR RhoGAP18B - chrX_12_19140001 chrX_19140001 RAL-138 2830 chrX 19281005 19281016 chrX 19281159 19281170 6 154 0.0 0.5 0.2 5.0 165 chrX 19281005 intergenic CG8034 - chrX 19281088 intergenic CG8034 - chrX 19281170 intergenic CG8034 - chrX_6_19280001 chrX_19280001 RAL-138 2831 chrX 19380139 19380177 chrX 19380405 19380441 pogo 4 265 5.0 2.0 3.5 0.9 302 chrX 19380139 intron kek5 + chrX 19380290 intron kek5 + chrX 19380441 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-138 2832 chrX 19460000 19460030 chrX 19460113 19460140 4 112 0.0 3.0 1.5 1.6 140 chrX 19460000 intron kek5 + chrX 19460070 intron kek5 + chrX 19460140 intron kek5 + chrX_4_19460001 chrX_19460001 RAL-138 2833 chrX 19461135 19461170 chrX 19461243 19461291 9 119 2.0 3.5 2.8 2.4 156 chrX 19461135 intron kek5 + chrX 19461213 intron kek5 + chrX 19461291 intron kek5 + chrX_9_19460001 chrX_19460001 RAL-138 2834 chrX 19472118 19472159 chrX 19472692 19472745 jockey 15 584 7.0 5.5 6.2 2.1 627 chrX 19472118 intergenic kek5 + chrX 19472432 intergenic not near genes chrX 19472745 intergenic not near genes chrX_15_19470001 chrX_19470001 RAL-138 2835 chrX 19500534 19500748 chrX 19500635 19500860 39 104 2.5 3.5 3.0 9.8 326 chrX 19500534 intron,intron CG14200 +,Pfrx + chrX 19500697 intron,intron CG14200 +,Pfrx + chrX 19500860 intron,intron CG14200 +,Pfrx + chrX_39_19500001 chrX_19500001 RAL-138 2836 chrX 19530852 19530886 chrX 19530971 19531005 6 118 6.5 4.5 5.5 0.9 153 chrX 19530852 3` UTR CoRest + chrX 19530928 intergenic CoRest +,CG12231 - chrX 19531005 intergenic CG12231 -,CoRest + chrX_6_19530001 chrX_19530001 RAL-138 2837 chrX 19541405 19541446 chrX 19541509 19541546 20 105 4.0 6.5 5.2 3.2 141 chrX 19541405 intron CG32532 - chrX 19541476 intron CG32532 - chrX 19541546 intron CG32532 - chrX_20_19540001 chrX_19540001 RAL-138 2838 chrX 19542108 19542162 chrX 19542231 19542285 12 121 4.0 4.0 4.0 2.4 177 chrX 19542108 intron CG32532 - chrX 19542196 intron CG32532 - chrX 19542285 intron CG32532 - chrX_12_19540001 chrX_19540001 RAL-138 2839 chrX 19593928 19593978 chrX 19594038 19594088 21 110 2.5 3.5 3.0 5.2 160 chrX 19593928 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594088 exon CG14205 + chrX_21_19590001 chrX_19590001 RAL-138 2840 chrX 19662006 19662052 chrX 19662254 19662300 12 248 8.0 9.5 8.8 1.2 294 chrX 19662006 intron CG14223 - chrX 19662153 intron CG14223 - chrX 19662300 intron CG14223 - chrX_12_19660001 chrX_19660001 RAL-138 2841 chrX 19674194 19674240 chrX 19674297 19674339 14 106 9.0 6.5 7.8 1.6 145 chrX 19674194 intron et - chrX 19674266 intron et - chrX 19674339 intron et - chrX_14_19670001 chrX_19670001 RAL-138 2842 chrX 19710047 19710096 chrX 19711857 19711905 S-element 24 1810 5.0 6.5 5.8 3.5 1858 chrX 19710047 intron meso18E - chrX 19710976 intron meso18E - chrX 19711905 intron meso18E - chrX_24_19710001 chrX_19710001 RAL-138 2843 chrX 19744640 19744661 chrX 19744763 19744789 4 123 46.5 53.0 49.8 0.1 149 chrX 19744640 5` UTR,exon CG33932 +,Rpp20 + chrX 19744714 intron,intron CG33932 +,Rpp20 + chrX 19744789 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-138 2844 chrX 19755502 19755552 chrX 19755618 19755668 17 111 5.0 4.5 4.8 2.9 166 chrX 19755502 intron Pmp70 + chrX 19755585 intron Pmp70 + chrX 19755668 intron Pmp70 + chrX_17_19755001 chrX_19755001 RAL-138 2845 chrX 19756100 19756116 chrX 19756211 19756227 6 111 11.5 1.5 6.5 0.8 127 chrX 19756100 intron Pmp70 + chrX 19756164 intron Pmp70 + chrX 19756227 intron Pmp70 + chrX_6_19755001 chrX_19755001 RAL-138 2846 chrX 19881431 19881484 chrX 19881537 19881590 5 106 3.0 1.5 2.2 1.6 159 chrX 19881431 intron Hers + chrX 19881510 intron Hers + chrX 19881590 intron Hers + chrX_5_19880001 chrX_19880001 RAL-138 2847 chrX 19884100 19884109 chrX 19884163 19884204 4 84 5.0 1.0 3.0 1.0 104 chrX 19884100 intron Hers + chrX 19884152 intron Hers + chrX 19884204 intron Hers + chrX_4_19880001 chrX_19880001 RAL-138 2848 chrX 19897368 19897415 chrX 19897470 19897517 27 102 7.0 9.0 8.0 3.0 149 chrX 19897368 intron Hers + chrX 19897442 intron Hers + chrX 19897517 intron Hers + chrX_27_19895001 chrX_19895001 RAL-138 2849 chrX 19983853 19983893 chrX 19983958 19983998 8 105 0.0 1.5 0.8 4.4 145 chrX 19983853 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19983998 intergenic not near genes chrX_8_19980001 chrX_19980001 RAL-138 2850 chrX 20041506 20041562 chrX 20041611 20041667 24 105 6.0 3.0 4.5 4.4 161 chrX 20041506 intron Dop2R - chrX 20041586 intron Dop2R - chrX 20041667 intron Dop2R - chrX_24_20040001 chrX_20040001 RAL-138 2851 chrX 20065783 20065834 chrX 20065887 20065938 15 103 6.5 6.5 6.5 2.0 155 chrX 20065783 intergenic not near genes chrX 20065860 intergenic not near genes chrX 20065938 intergenic not near genes chrX_15_20065001 chrX_20065001 RAL-138 2852 chrX 20124061 20124108 chrX 20124225 20124272 6 164 1.0 1.0 1.0 3.0 211 chrX 20124061 intron CG34331 + chrX 20124166 intron CG34331 + chrX 20124272 intron CG34331 + chrX_6_20120001 chrX_20120001 RAL-138 2853 chrX 20132282 20132292 chrX 20132386 20132400 4 106 9.5 6.0 7.8 0.5 118 chrX 20132282 intergenic not near genes chrX 20132341 intergenic not near genes chrX 20132400 intergenic not near genes chrX_4_20130001 chrX_20130001 RAL-138 2854 chrX 20133147 20133177 chrX 20133284 20133311 10 137 1.5 12.0 6.8 1.3 164 chrX 20133147 intergenic CG15322 + chrX 20133229 intergenic CG15322 + chrX 20133311 intergenic CG15322 + chrX_10_20130001 chrX_20130001 RAL-138 2855 chrX 20271478 20271518 chrX 20271595 20271635 9 117 4.5 0.0 2.2 2.8 157 chrX 20271478 intergenic not near genes chrX 20271556 intergenic not near genes chrX 20271635 intergenic not near genes chrX_9_20270001 chrX_20270001 RAL-138 2856 chrX 20279731 20279774 chrX 20279837 20279880 23 106 5.5 4.5 5.0 3.8 149 chrX 20279731 intergenic not near genes chrX 20279806 intergenic not near genes chrX 20279880 intergenic not near genes chrX_23_20275001 chrX_20275001 RAL-138 2857 chrX 20312857 20312910 chrX 20312959 20313013 21 103 6.0 4.0 5.0 3.5 156 chrX 20312857 intron CG1504 - chrX 20312935 intron CG1504 - chrX 20313013 intron CG1504 - chrX_21_20310001 chrX_20310001 RAL-138 2858 chrX 20320275 20320308 chrX 20320376 20320410 5 100 1.5 3.0 2.2 1.6 135 chrX 20320275 intron CG1504 - chrX 20320342 intron CG1504 - chrX 20320410 intron CG1504 - chrX_5_20320001 chrX_20320001 RAL-138 2859 chrX 20369294 20369343 chrX 20369403 20369452 22 109 2.5 2.0 2.2 6.9 158 chrX 20369294 intergenic not near genes chrX 20369373 intergenic not near genes chrX 20369452 intergenic not near genes chrX_22_20365001 chrX_20365001 RAL-138 2860 chrX 20377328 20377340 chrX 20378802 20378832 hobo 9 1484 9.0 8.0 8.5 0.9 1504 chrX 20377328 intergenic not near genes chrX 20378080 intergenic not near genes chrX 20378832 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-138 2861 chrX 20386796 20386846 chrX 20386907 20386957 11 111 1.0 3.0 2.0 3.7 161 chrX 20386796 intergenic not near genes chrX 20386876 intergenic not near genes chrX 20386957 intergenic not near genes chrX_11_20385001 chrX_20385001 RAL-138 2862 chrX 20415056 20415084 chrX 20415155 20415185 5 97 3.5 7.0 5.2 0.8 129 chrX 20415056 intergenic not near genes chrX 20415120 intergenic not near genes chrX 20415185 intergenic not near genes chrX_5_20415001 chrX_20415001 RAL-138 2863 chrX 20443162 20443205 chrX 20443251 20443306 16 99 4.0 5.0 4.5 2.9 144 chrX 20443162 exon CG1695 + chrX 20443234 intron CG1695 + chrX 20443306 intron CG1695 + chrX_16_20440001 chrX_20440001 RAL-138 2864 chrX 20467997 20468013 chrX 20468111 20468126 5 114 5.5 0.0 2.8 1.3 129 chrX 20467997 intron GstT3 + chrX 20468062 intron GstT3 + chrX 20468126 intron GstT3 + chrX_5_20465001 chrX_20465001 RAL-138 2865 chrX 20503074 20503125 chrX 20503182 20503234 11 108 3.0 1.5 2.2 3.4 160 chrX 20503074 intron RhoGAP19D - chrX 20503154 intron RhoGAP19D - chrX 20503234 intron RhoGAP19D - chrX_11_20500001 chrX_20500001 RAL-138 2866 chrX 20528576 20528629 chrX 20528948 20529002 10 373 3.5 2.5 3.0 2.5 426 chrX 20528576 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20529002 intergenic not near genes chrX_10_20525001 chrX_20525001 RAL-138 2867 chrX 20559107 20559161 chrX 20559220 20559274 12 113 0.0 6.0 3.0 3.0 167 chrX 20559107 intron RunxB + chrX 20559190 intron RunxB + chrX 20559274 intron RunxB + chrX_12_20555001 chrX_20555001 RAL-138 2868 chrX 20594278 20594332 chrX 20594387 20594424 17 98 6.0 4.5 5.2 2.7 146 chrX 20594278 intron RunxA - chrX 20594351 intron RunxA - chrX 20594424 intron RunxA - chrX_17_20590001 chrX_20590001 RAL-138 2869 chrX 20635408 20635445 chrX 20635599 20635636 5 191 1.5 3.5 2.5 1.4 228 chrX 20635408 intergenic not near genes chrX 20635522 intergenic not near genes chrX 20635636 intergenic not near genes chrX_5_20635001 chrX_20635001 RAL-138 2870 chrX 20710417 20710441 chrX 20710519 20710543 7 102 1.5 5.5 3.5 1.6 126 chrX 20710417 intergenic not near genes chrX 20710480 intergenic not near genes chrX 20710543 intergenic not near genes chrX_7_20710001 chrX_20710001 RAL-138 2871 chrX 20836715 20836754 chrX 20844342 20844381 roo 4 7626 0.0 3.5 1.8 1.4 7666 chrX 20836715 intron shakB - chrX 20840548 intron shakB - chrX 20844381 intron shakB - chrX_4_20840001 chrX_20840001 RAL-138 2872 chrX 20940701 20940729 chrX 20942195 20942223 hobo 5 1494 5.0 3.0 4.0 1.0 1522 chrX 20940701 intergenic not near genes chrX 20941462 intergenic not near genes chrX 20942223 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-138 2873 chrX 21022216 21022229 chrX 21022410 21022421 5 194 4.0 4.0 4.0 1.0 205 chrX 21022216 intergenic not near genes chrX 21022318 intergenic not near genes chrX 21022421 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-138 2874 chrX 21029162 21029171 chrX 21029404 21029412 4 242 2.5 8.0 5.2 0.6 250 chrX 21029162 3` UTR CG1529 - chrX 21029287 3` UTR CG1529 - chrX 21029412 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-138 2875 chrX 21029787 21029811 chrX 21029953 21029977 11 166 1.5 6.0 3.8 2.3 190 chrX 21029787 3` UTR CG1529 - chrX 21029882 3` UTR CG1529 - chrX 21029977 3` UTR CG1529 - chrX_11_21025001 chrX_21025001 RAL-138 2876 chrX 21055669 21055725 chrX 21055769 21055826 4 100 1.5 1.5 1.5 1.6 157 chrX 21055669 intron bves + chrX 21055748 intron bves + chrX 21055826 intron bves + chrX_4_21055001 chrX_21055001 RAL-138 2877 chrX 21058154 21058174 chrX 21058280 21058301 6 127 2.0 2.0 2.0 2.0 147 chrX 21058154 intron bves + chrX 21058228 intron bves + chrX 21058301 intron bves + chrX_6_21055001 chrX_21055001 RAL-138 2878 chrX 21061856 21061893 chrX 21062366 21062403 roo 11 510 9.5 5.0 7.2 1.3 547 chrX 21061856 intron bves + chrX 21062130 intron bves + chrX 21062403 intron,3` UTR bves +,CG32512 - chrX_11_21060001 chrX_21060001 RAL-138 2879 chrX 21077570 21077611 chrX 21077684 21077718 8 112 1.0 2.0 1.5 3.2 148 chrX 21077570 intron bves + chrX 21077644 intron bves + chrX 21077718 intron bves + chrX_8_21075001 chrX_21075001 RAL-138 2880 chrX 21078745 21078773 chrX 21078848 21078876 5 103 2.5 0.5 1.5 2.0 131 chrX 21078745 intron bves + chrX 21078810 intron bves + chrX 21078876 intron bves + chrX_5_21075001 chrX_21075001 RAL-138 2881 chrX 21086115 21086136 chrX 21087169 21087191 jockey 5 1054 4.0 4.5 4.2 1.0 1076 chrX 21086115 intergenic not near genes chrX 21086653 intergenic not near genes chrX 21087191 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-138 2882 chrX 21089119 21089170 chrX 21089238 21089289 8 119 6.0 2.0 4.0 1.6 170 chrX 21089119 intergenic not near genes chrX 21089204 intergenic not near genes chrX 21089289 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-138 2883 chrX 21092642 21092682 chrX 21092731 21092785 23 93 7.0 7.0 7.0 2.9 143 chrX 21092642 intergenic not near genes chrX 21092714 intergenic not near genes chrX 21092785 intergenic not near genes chrX_23_21090001 chrX_21090001 RAL-138 2884 chrX 21253285 21253303 chrX 21253364 21253381 7 91 7.0 9.5 8.2 0.8 96 chrX 21253285 intron CG32521 - chrX 21253333 intron CG32521 - chrX 21253381 intron CG32521 - chrX_7_21250001 chrX_21250001 RAL-138 2885 chrX 21268045 21268086 chrX 21268151 21268192 13 106 7.5 5.0 6.2 1.8 147 chrX 21268045 intron CG32521 - chrX 21268118 intron CG32521 - chrX 21268192 intron CG32521 - chrX_13_21265001 chrX_21265001 RAL-138 2886 chrX 21323587 21323629 chrX 21323691 21323736 11 104 7.0 6.5 6.8 1.4 149 chrX 21323587 5` UTR Dd - chrX 21323662 5` UTR Dd - chrX 21323736 5` UTR Dd - chrX_11_21320001 chrX_21320001 RAL-138 2887 chrX 21328094 21328143 chrX 21328230 21328278 20 136 6.5 4.0 5.2 3.2 184 chrX 21328094 3` UTR CG1486 + chrX 21328186 intergenic CG1486 +,tty - chrX 21328278 intergenic CG1486 +,tty - chrX_20_21325001 chrX_21325001 RAL-138 2888 chrX 21414351 21414370 chrX 21414452 21414463 6 97 3.0 9.0 6.0 0.9 112 chrX 21414351 intergenic not near genes chrX 21414407 intergenic not near genes chrX 21414463 intergenic not near genes chrX_6_21410001 chrX_21410001 RAL-138 2889 chrX 21419706 21419731 chrX 21419820 21419845 4 114 0.5 6.0 3.2 1.0 139 chrX 21419706 intergenic not near genes chrX 21419776 intergenic not near genes chrX 21419845 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-138 2890 chrX 21428314 21428328 chrX 21428529 21428543 5 212 14.5 5.5 10.0 0.5 229 chrX 21428314 intron CG42343 - chrX 21428428 intron CG42343 - chrX 21428543 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-138 2891 chrX 21428332 21428368 chrX 21428527 21428583 14 199 7.0 5.5 6.2 1.9 251 chrX 21428332 intron CG42343 - chrX 21428458 intron CG42343 - chrX 21428583 intron CG42343 - chrX_14_21425001 chrX_21425001 RAL-138 2892 chrX 21454845 21454872 chrX 21454953 21454981 6 109 2.5 2.0 2.2 1.9 136 chrX 21454845 intron CG42343 - chrX 21454913 intron CG42343 - chrX 21454981 intron CG42343 - chrX_6_21450001 chrX_21450001 RAL-138 2893 chrX 21455221 21455243 chrX 21455433 21455441 7 209 2.5 3.0 2.8 1.8 220 chrX 21455221 intron CG42343 - chrX 21455331 intron CG42343 - chrX 21455441 intron CG42343 - chrX_7_21455001 chrX_21455001 RAL-138 2894 chrX 21458665 21458724 chrX 21464126 21464184 Ivk 26 5461 6.0 5.0 5.5 4.0 5519 chrX 21458665 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464184 intergenic not near genes chrX_26_21460001 chrX_21460001 RAL-138 2895 chrX 21474389 21474429 chrX 21474780 21474820 1731 11 389 1.5 0.5 1.0 5.5 431 chrX 21474389 intergenic not near genes chrX 21474604 intergenic not near genes chrX 21474820 intergenic not near genes chrX_11_21470001 chrX_21470001 RAL-138 2896 chrX 21492263 21492287 chrX 21492401 21492424 5 137 3.0 3.0 3.0 1.2 161 chrX 21492263 intergenic not near genes chrX 21492344 intergenic not near genes chrX 21492424 intergenic not near genes chrX_5_21490001 chrX_21490001 RAL-138 2897 chrX 21565394 21565436 chrX 21565497 21565539 9 102 3.5 3.5 3.5 2.0 145 chrX 21565394 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565539 intergenic not near genes chrX_9_21565001 chrX_21565001 RAL-138 2898 chrX 21668244 21668287 chrX 21668354 21668397 10 110 7.0 0.5 3.8 2.1 153 chrX 21668244 intergenic not near genes chrX 21668320 intergenic not near genes chrX 21668397 intergenic not near genes chrX_10_21665001 chrX_21665001 RAL-138 2899 chrX 22522608 22522612 chrX 22525447 22525457 NOF 4 2844 1.0 3.0 2.0 1.3 2849 chrX 22522608 intron CG17600 + chrX 22524032 intron CG17600 + chrX 22525457 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-138 2900 chrX 22584341 22584366 chrX 22584432 22584482 5 111 2.5 0.5 1.5 2.0 141 chrX 22584341 intron Cda4 - chrX 22584412 intron Cda4 - chrX 22584482 intron Cda4 - chrX_5_22580001 chrX_22580001 RAL-138 2901 chrX 22660554 22660604 chrX 22660663 22660713 6 108 3.5 3.5 3.5 1.3 159 chrX 22660554 intron CR44997 + chrX 22660634 intron CR44997 + chrX 22660713 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-138 2902 chrX 22697488 22697515 chrX 22701809 22701837 Juan 11 4322 4.0 5.0 4.5 2.0 4349 chrX 22697488 intron CR44997 + chrX 22699662 intron CR44997 + chrX 22701837 intron CR44997 + chrX_11_22695001 chrX_22695001 RAL-138 2903 chrX 22771486 22771520 chrX 22774802 22774810 297 4 3310 4.5 2.5 3.5 0.9 3324 chrX 22771486 intron CR44997 + chrX 22773148 intron CR44997 + chrX 22774810 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-138 2904 chrX 22811975 22812002 chrX 22816772 22816799 F-element 7 4797 8.5 6.0 7.2 0.9 4824 chrX 22811975 intergenic CG12446 - chrX 22814387 intergenic not near genes chrX 22816799 intergenic not near genes chrX_7_22810001 chrX_22810001 RAL-138 2905 chrX 22824228 22824441 chrX 22824379 22824599 11 156 1.5 1.5 1.5 4.4 371 chrX 22824228 intergenic fog - chrX 22824414 3` UTR fog - chrX 22824599 3` UTR fog - chrX_11_22820001 chrX_22820001 RAL-138 2906 chrX 22844515 22844525 chrX 22844627 22844637 5 112 4.5 2.5 3.5 1.1 122 chrX 22844515 intron,intron fog -,CG42346 + chrX 22844576 intron,intron fog -,CG42346 + chrX 22844637 intron,intron fog -,CG42346 + chrX_5_22840001 chrX_22840001 RAL-138 2907 chrX 22870845 22870900 chrX 22870960 22871004 6 103 2.0 4.0 3.0 1.5 159 chrX 22870845 intron,3` UTR CG42346 +,CR43656 - chrX 22870924 intron,3` UTR CG42346 +,CR43656 - chrX 22871004 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-138 2908 chrX 22987103 22987123 chrX 22989765 22989799 Burdock 10 2681 8.0 1.5 4.8 1.7 2696 chrX 22987103 intron,intron stnA -,stnB - chrX 22988451 intron,intron stnA -,stnB - chrX 22989799 intron,intron stnA -,stnB - chrX_10_22985001 chrX_22985001 RAL-138 2909 chrX 22991121 22991173 chrX 22991246 22991280 14 105 15.0 4.5 9.8 1.3 159 chrX 22991121 3` UTR,exon stnA -,stnB - chrX 22991200 3` UTR,exon stnA -,stnB - chrX 22991280 3` UTR,exon stnA -,stnB - chrX_14_22990001 chrX_22990001 RAL-138 2910 chrX 22996296 22996337 chrX 23003555 23003595 roo 8 7258 2.0 4.0 3.0 2.0 7299 chrX 22996296 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003595 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-138 2911 chrX 16243794 16243797 chrX 23461072 23461082 5 7217281 7.0 2.0 4.5 0.9 7217288 chrX 16243794 intergenic not near genes chrX 19852438 exon Nup205 + chrX 23461082 intergenic not near genes chrX_5_19850001 chrX_19850001 RAL-138 2912 chrY 975794 975817 chrY 975899 976005 6 130 74.5 84.0 79.2 0.1 211 chrY 975794 intergenic not near genes chrY 975900 intergenic not near genes chrY 976005 intergenic not near genes chrY_6_975001 chrY_975001 RAL-138 2913 chrY 1419886 1419913 chrY 1420165 1420192 4 279 4.5 6.0 5.2 0.6 306 chrY 1419886 intergenic not near genes chrY 1420039 intergenic not near genes chrY 1420192 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-138