SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47472 chr2L 52565 52574 jockey 6 5102 5.5 4.5 5.0 1.0 5113 chr2L 47461 intron Cda5 - chr2L 50018 intron Cda5 - chr2L 52574 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-136 2 chr2L 47473 47491 chr2L 52562 52596 jockey 6 5099 4.5 4.0 4.2 1.2 5123 chr2L 47473 intron Cda5 - chr2L 50034 intron Cda5 - chr2L 52596 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-136 3 chr2L 73795 73811 chr2L 73904 73917 8 108 2.0 3.5 2.8 2.1 122 chr2L 73795 3` UTR,intron CR44987 -,galectin + chr2L 73856 intron galectin + chr2L 73917 intron galectin + chr2L_8_70001 chr2L_70001 RAL-136 4 chr2L 325130 325148 chr2L 325207 325207 6 72 4.0 5.0 4.5 1.1 77 chr2L 325130 intron Plc21C + chr2L 325168 intron Plc21C + chr2L 325207 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-136 5 chr2L 371446 371454 chr2L 371525 371533 4 78 4.0 4.0 4.0 0.8 87 chr2L 371446 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371533 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-136 6 chr2L 481880 481888 chr2L 482166 482173 6 285 7.0 3.5 5.2 1.0 293 chr2L 481880 intron ush + chr2L 482026 intron ush + chr2L 482173 intron ush + chr2L_6_480001 chr2L_480001 RAL-136 7 chr2L 481890 481908 chr2L 482160 482189 6 276 4.5 2.5 3.5 1.3 299 chr2L 481890 intron ush + chr2L 482040 intron ush + chr2L 482189 intron ush + chr2L_6_480001 chr2L_480001 RAL-136 8 chr2L 590625 590647 chr2L 590719 590722 6 95 4.5 7.0 5.8 0.9 97 chr2L 590625 intron Gsc - chr2L 590674 intron Gsc - chr2L 590722 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-136 9 chr2L 600298 600330 chr2L 600381 600411 8 80 5.0 3.0 4.0 1.6 113 chr2L 600298 intergenic not near genes chr2L 600354 intergenic not near genes chr2L 600411 intergenic not near genes chr2L_8_600001 chr2L_600001 RAL-136 10 chr2L 686925 686948 chr2L 695965 695977 roo 6 9031 1.5 5.5 3.5 1.3 9052 chr2L 686925 intron ds - chr2L 691451 intron ds - chr2L 695977 intron ds - chr2L_6_690001 chr2L_690001 RAL-136 11 chr2L 730775 730794 chr2L 730852 730865 10 84 2.0 2.5 2.2 3.1 90 chr2L 730775 intergenic Hsp60B + chr2L 730820 intergenic Hsp60B + chr2L 730865 intergenic Hsp60B + chr2L_10_730001 chr2L_730001 RAL-136 12 chr2L 877851 877873 chr2L 877932 877941 9 76 5.0 3.0 4.0 1.8 90 chr2L 877851 3` UTR,exon CG15824 -,ninaA + chr2L 877896 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-136 13 chr2L 931638 931667 chr2L 931717 931740 9 78 5.0 2.5 3.8 1.9 102 chr2L 931638 intron CG4341 + chr2L 931689 intron CG4341 + chr2L 931740 intron CG4341 + chr2L_9_930001 chr2L_930001 RAL-136 14 chr2L 937052 937060 chr2L 937128 937135 4 74 1.5 3.5 2.5 1.1 83 chr2L 937052 intron CG4341 + chr2L 937094 intron CG4341 + chr2L 937135 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-136 15 chr2L 976878 976907 chr2L 984514 984543 roo 4 7634 2.0 2.5 2.2 1.2 7665 chr2L 976878 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-136 16 chr2L 1035567 1035594 chr2L 1035640 1035671 9 72 1.0 4.0 2.5 2.6 104 chr2L 1035567 intron IA-2 - chr2L 1035619 intron IA-2 - chr2L 1035671 intron IA-2 - chr2L_9_1035001 chr2L_1035001 RAL-136 17 chr2L 1126679 1126705 chr2L 1126750 1126766 7 68 6.0 6.0 6.0 1.0 87 chr2L 1126679 intron Pino - chr2L 1126722 intron Pino - chr2L 1126766 intron Pino - chr2L_7_1125001 chr2L_1125001 RAL-136 18 chr2L 1164245 1164277 chr2L 1164331 1164363 6 86 3.5 2.0 2.8 1.6 118 chr2L 1164245 intergenic IntS14 +,CG5080 - chr2L 1164304 intergenic IntS14 +,CG5080 - chr2L 1164363 intergenic IntS14 +,CG5080 - chr2L_6_1160001 chr2L_1160001 RAL-136 19 chr2L 1220129 1220162 chr2L 1227595 1227618 blood 12 7462 2.5 4.0 3.2 2.9 7489 chr2L 1220129 intron CG42329 + chr2L 1223874 intron CG42329 + chr2L 1227618 intron CG42329 + chr2L_12_1220001 chr2L_1220001 RAL-136 20 chr2L 1244412 1244429 chr2L 1244489 1244496 5 75 1.5 2.5 2.0 1.7 84 chr2L 1244412 intergenic not near genes chr2L 1244454 intergenic not near genes chr2L 1244496 intergenic not near genes chr2L_5_1240001 chr2L_1240001 RAL-136 21 chr2L 1308427 1308458 chr2L 1308536 1308552 11 105 3.0 4.0 3.5 2.4 125 chr2L 1308427 intergenic not near genes chr2L 1308490 intergenic not near genes chr2L 1308552 intergenic not near genes chr2L_11_1305001 chr2L_1305001 RAL-136 22 chr2L 1317983 1318008 chr2L 1319851 1319877 8 1869 16.0 21.0 18.5 0.4 1894 chr2L 1317983 intergenic not near genes chr2L 1318930 intergenic not near genes chr2L 1319877 intergenic not near genes chr2L_8_1315001 chr2L_1315001 RAL-136 23 chr2L 1570700 1570718 chr2L 1573560 1573586 F-element 5 2868 2.5 2.5 2.5 1.4 2886 chr2L 1570700 intron haf + chr2L 1572143 intron haf + chr2L 1573586 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-136 24 chr2L 1590963 1590990 chr2L 1591039 1591050 8 70 3.5 2.0 2.8 2.1 87 chr2L 1590963 intron haf + chr2L 1591006 intron haf + chr2L 1591050 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-136 25 chr2L 1597858 1597888 chr2L 1597934 1597959 9 73 2.5 1.5 2.0 3.0 101 chr2L 1597858 intron,intron haf +,CG31935 - chr2L 1597908 intron,intron haf +,CG31935 - chr2L 1597959 intron,intron haf +,CG31935 - chr2L_9_1595001 chr2L_1595001 RAL-136 26 chr2L 1646090 1646110 chr2L 1646169 1646169 4 74 1.5 1.0 1.2 1.8 79 chr2L 1646090 intergenic not near genes chr2L 1646130 intergenic not near genes chr2L 1646169 intergenic not near genes chr2L_4_1645001 chr2L_1645001 RAL-136 27 chr2L 1699274 1699282 chr2L 1699341 1699365 4 79 0.5 2.5 1.5 1.6 91 chr2L 1699274 3` UTR chinmo + chr2L 1699320 3` UTR chinmo + chr2L 1699365 3` UTR chinmo + chr2L_4_1695001 chr2L_1695001 RAL-136 28 chr2L 1711358 1711383 chr2L 1711681 1711695 mdg3 7 321 3.0 2.0 2.5 2.0 337 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711526 3` UTR frtz - chr2L 1711695 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-136 29 chr2L 1781128 1781135 chr2L 1781274 1781287 5 150 9.5 4.5 7.0 0.6 159 chr2L 1781128 intergenic not near genes chr2L 1781208 intergenic not near genes chr2L 1781287 intergenic not near genes chr2L_5_1780001 chr2L_1780001 RAL-136 30 chr2L 2047808 2047822 chr2L 2047999 2048017 5 194 3.0 0.0 1.5 2.0 209 chr2L 2047808 3` UTR Kebab + chr2L 2047912 3` UTR Kebab + chr2L 2048017 3` UTR Kebab + chr2L_5_2045001 chr2L_2045001 RAL-136 31 chr2L 2100379 2100406 chr2L 2109530 2109545 roo 7 9146 1.0 4.0 2.5 2.0 9166 chr2L 2100379 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109545 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-136 32 chr2L 2112125 2112142 chr2L 2119787 2119800 opus 4 7658 1.0 3.0 2.0 1.3 7675 chr2L 2112125 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119800 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-136 33 chr2L 2121962 2121966 chr2L 2122112 2122116 4 150 1.5 1.5 1.5 1.6 154 chr2L 2121962 intergenic not near genes chr2L 2122039 intergenic not near genes chr2L 2122116 intergenic not near genes chr2L_4_2120001 chr2L_2120001 RAL-136 34 chr2L 2260803 2260836 chr2L 2260889 2260922 8 84 1.0 2.0 1.5 3.2 119 chr2L 2260803 intergenic not near genes chr2L 2260862 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-136 35 chr2L 2551630 2551642 chr2L 2554957 2554964 7 3326 18.0 12.5 15.2 0.4 3334 chr2L 2551630 exon CG3515 - chr2L 2553297 intergenic CG3515 - chr2L 2554964 intergenic not near genes chr2L_7_2550001 chr2L_2550001 RAL-136 36 chr2L 2550956 2550979 chr2L 2555269 2555291 7 4314 13.0 26.5 19.8 0.3 4335 chr2L 2550956 intergenic CG3515 - chr2L 2553124 intergenic CG3515 - chr2L 2555291 intergenic CR44113 + chr2L_7_2550001 chr2L_2550001 RAL-136 37 chr2L 2565559 2565561 chr2L 2571632 2571633 297 4 6072 5.0 5.0 5.0 0.7 6074 chr2L 2565559 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571633 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-136 38 chr2L 2661220 2661235 chr2L 2663031 2663063 I-element 6 1816 1.0 1.5 1.2 2.7 1843 chr2L 2661220 intergenic not near genes chr2L 2662142 intergenic not near genes chr2L 2663063 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-136 39 chr2L 2664436 2664468 chr2L 2664512 2664545 8 72 1.0 0.0 0.5 5.3 109 chr2L 2664436 intergenic not near genes chr2L 2664490 intergenic not near genes chr2L 2664545 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-136 40 chr2L 2698869 2698889 chr2L 2698956 2698976 4 83 1.5 2.0 1.8 1.4 107 chr2L 2698869 intron CG31690 + chr2L 2698922 intron CG31690 + chr2L 2698976 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-136 41 chr2L 2713513 2713551 chr2L 2713611 2713628 12 92 1.0 4.0 2.5 3.4 115 chr2L 2713513 intron CG31690 + chr2L 2713570 intron CG31690 + chr2L 2713628 intron CG31690 + chr2L_12_2710001 chr2L_2710001 RAL-136 42 chr2L 2793946 2793970 chr2L 2794021 2794050 7 75 3.5 2.5 3.0 1.8 104 chr2L 2793946 intron Syt1 - chr2L 2793998 intron Syt1 - chr2L 2794050 intron Syt1 - chr2L_7_2790001 chr2L_2790001 RAL-136 43 chr2L 2895693 2895717 chr2L 2895777 2895803 8 85 1.5 1.0 1.2 3.6 110 chr2L 2895693 intron lilli + chr2L 2895748 intron lilli + chr2L 2895803 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-136 44 chr2L 2929598 2929613 chr2L 2930596 2930619 11 1001 22.0 11.0 16.5 0.6 1021 chr2L 2929598 intron lilli + chr2L 2930108 intron lilli + chr2L 2930619 intron lilli + chr2L_11_2930001 chr2L_2930001 RAL-136 45 chr2L 3073030 3073061 chr2L 3078233 3078253 copia 13 5200 3.0 5.0 4.0 2.6 5223 chr2L 3073030 intron toc - chr2L 3075642 intron toc - chr2L 3078253 intron toc - chr2L_13_3075001 chr2L_3075001 RAL-136 46 chr2L 3096144 3096167 chr2L 3096223 3096243 8 76 5.5 3.5 4.5 1.5 99 chr2L 3096144 intron toc - chr2L 3096194 intron toc - chr2L 3096243 intron toc - chr2L_8_3095001 chr2L_3095001 RAL-136 47 chr2L 3147283 3147289 chr2L 3147360 3147366 4 76 2.5 4.5 3.5 0.9 83 chr2L 3147283 3` UTR Mad - chr2L 3147324 3` UTR Mad - chr2L 3147366 3` UTR Mad - chr2L_4_3145001 chr2L_3145001 RAL-136 48 chr2L 3147290 3147306 chr2L 3147355 3147383 11 73 2.5 4.0 3.2 2.6 93 chr2L 3147290 3` UTR Mad - chr2L 3147336 3` UTR Mad - chr2L 3147383 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-136 49 chr2L 3198159 3198173 chr2L 3198241 3198241 7 79 7.0 0.0 3.5 1.6 82 chr2L 3198159 intron CG34393 - chr2L 3198200 intron CG34393 - chr2L 3198241 intron CG34393 - chr2L_7_3195001 chr2L_3195001 RAL-136 50 chr2L 3251494 3251527 chr2L 3259059 3259092 springer 11 7563 2.5 3.0 2.8 2.9 7598 chr2L 3251494 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_11_3255001 chr2L_3255001 RAL-136 51 chr2L 3396607 3396621 chr2L 3396800 3396818 8 195 1.5 5.0 3.2 1.9 211 chr2L 3396607 intergenic not near genes chr2L 3396712 intergenic not near genes chr2L 3396818 intergenic not near genes chr2L_8_3395001 chr2L_3395001 RAL-136 52 chr2L 3419852 3419872 chr2L 3419963 3419983 4 111 4.5 2.0 3.2 1.0 131 chr2L 3419852 intron pgant2 - chr2L 3419918 intron pgant2 - chr2L 3419983 intron pgant2 - chr2L_4_3415001 chr2L_3415001 RAL-136 53 chr2L 3442503 3442533 chr2L 3442650 3442679 15 146 4.0 4.0 4.0 3.0 176 chr2L 3442503 intergenic not near genes chr2L 3442591 intergenic not near genes chr2L 3442679 intergenic not near genes chr2L_15_3440001 chr2L_3440001 RAL-136 54 chr2L 3537746 3537753 chr2L 3537814 3537832 4 74 1.5 0.0 0.8 2.2 86 chr2L 3537746 intergenic CR44308 + chr2L 3537789 intergenic CR44308 + chr2L 3537832 intergenic CR44308 + chr2L_4_3535001 chr2L_3535001 RAL-136 55 chr2L 3634102 3634137 chr2L 3634184 3634209 10 79 2.0 3.0 2.5 2.9 107 chr2L 3634102 intron for - chr2L 3634156 intron for - chr2L 3634209 intron for - chr2L_10_3630001 chr2L_3630001 RAL-136 56 chr2L 3646815 3646836 chr2L 3646897 3646912 6 78 3.5 5.0 4.2 1.2 97 chr2L 3646815 intron for - chr2L 3646864 intron for - chr2L 3646912 intron for - chr2L_6_3645001 chr2L_3645001 RAL-136 57 chr2L 3665101 3665130 chr2L 3665186 3665198 5 77 1.5 1.0 1.2 2.3 97 chr2L 3665101 intron CG34340 + chr2L 3665150 intron CG34340 + chr2L 3665198 intron CG34340 + chr2L_5_3665001 chr2L_3665001 RAL-136 58 chr2L 3740313 3740339 chr2L 3740398 3740409 6 81 3.0 3.5 3.2 1.4 96 chr2L 3740313 intron CG10019 + chr2L 3740361 intron CG10019 + chr2L 3740409 intron CG10019 + chr2L_6_3740001 chr2L_3740001 RAL-136 59 chr2L 3783261 3783280 chr2L 3783352 3783371 4 89 2.5 3.0 2.8 1.1 110 chr2L 3783261 exon bowl + chr2L 3783316 3` UTR bowl + chr2L 3783371 3` UTR bowl + chr2L_4_3780001 chr2L_3780001 RAL-136 60 chr2L 3784705 3784726 chr2L 3786375 3786383 4 1660 20.0 11.5 15.8 0.2 1678 chr2L 3784705 intergenic CG31960 + chr2L 3785544 3` UTR CG31960 + chr2L 3786383 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-136 61 chr2L 3819034 3819056 chr2L 3819114 3819138 7 79 4.0 1.0 2.5 2.0 104 chr2L 3819034 intergenic CR44077 + chr2L 3819086 intergenic not near genes chr2L 3819138 intergenic not near genes chr2L_7_3815001 chr2L_3815001 RAL-136 62 chr2L 3831848 3831859 chr2L 3831929 3831930 4 78 3.0 2.5 2.8 1.1 82 chr2L 3831848 intergenic not near genes chr2L 3831889 intergenic not near genes chr2L 3831930 intergenic not near genes chr2L_4_3830001 chr2L_3830001 RAL-136 63 chr2L 3891898 3891927 chr2L 3891979 3892012 7 84 5.0 2.5 3.8 1.5 114 chr2L 3891898 intron capu - chr2L 3891955 intron capu - chr2L 3892012 intron capu - chr2L_7_3890001 chr2L_3890001 RAL-136 64 chr2L 3943810 3943821 chr2L 3943886 3943912 4 86 1.5 3.0 2.2 1.2 102 chr2L 3943810 intron fred - chr2L 3943861 intron fred - chr2L 3943912 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-136 65 chr2L 3959183 3959206 chr2L 3959248 3959282 6 72 1.5 1.5 1.5 2.4 99 chr2L 3959183 intron fred - chr2L 3959232 intron fred - chr2L 3959282 intron fred - chr2L_6_3955001 chr2L_3955001 RAL-136 66 chr2L 4066039 4066062 chr2L 4068864 4068866 Juan 7 2819 4.5 3.0 3.8 1.5 2827 chr2L 4066039 intron ed + chr2L 4067452 intron ed + chr2L 4068866 intron ed + chr2L_7_4065001 chr2L_4065001 RAL-136 67 chr2L 4089744 4089768 chr2L 4089833 4089844 6 85 3.0 1.0 2.0 2.0 100 chr2L 4089744 intron ed + chr2L 4089794 intron ed + chr2L 4089844 intron ed + chr2L_6_4085001 chr2L_4085001 RAL-136 68 chr2L 4150627 4150656 chr2L 4150707 4150719 4 71 0.5 2.5 1.5 1.6 92 chr2L 4150627 exon CG2955 + chr2L 4150673 exon CG2955 + chr2L 4150719 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-136 69 chr2L 4166378 4166411 chr2L 4166461 4166494 11 79 3.5 2.0 2.8 2.9 116 chr2L 4166378 intergenic Or24a - chr2L 4166436 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_11_4165001 chr2L_4165001 RAL-136 70 chr2L 4169005 4169030 chr2L 4169102 4169129 8 95 8.5 0.5 4.5 1.5 124 chr2L 4169005 intergenic not near genes chr2L 4169067 intergenic not near genes chr2L 4169129 intergenic not near genes chr2L_8_4165001 chr2L_4165001 RAL-136 71 chr2L 4181292 4181303 chr2L 4183924 4183935 Burdock 5 2632 3.0 7.5 5.2 0.8 2643 chr2L 4181292 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183935 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-136 72 chr2L 4439429 4439454 chr2L 4439512 4439538 7 84 2.0 1.5 1.8 2.5 109 chr2L 4439429 5` UTR CG15431 - chr2L 4439484 5` UTR CG15431 - chr2L 4439538 intron CG15431 - chr2L_7_4435001 chr2L_4435001 RAL-136 73 chr2L 4601706 4601734 chr2L 4609147 4609175 mdg1 11 7439 4.5 5.5 5.0 1.8 7469 chr2L 4601706 intron dp - chr2L 4605440 intron dp - chr2L 4609175 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-136 74 chr2L 4819496 4819518 chr2L 4819617 4819627 7 117 2.0 4.5 3.2 1.7 131 chr2L 4819496 intergenic not near genes chr2L 4819562 intergenic not near genes chr2L 4819627 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-136 75 chr2L 4918169 4918178 chr2L 4923238 4923240 jockey 4 5068 3.5 1.5 2.5 1.1 5071 chr2L 4918169 intron hoe1 - chr2L 4920704 intron hoe1 - chr2L 4923240 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-136 76 chr2L 5120990 5121004 chr2L 5121071 5121098 4 89 2.5 4.0 3.2 1.0 108 chr2L 5120990 intron Msp300 + chr2L 5121044 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_4_5120001 chr2L_5120001 RAL-136 77 chr2L 5287424 5287448 chr2L 5287515 5287525 8 90 1.0 1.5 1.2 3.6 101 chr2L 5287424 intergenic CR44743 -,CR44742 + chr2L 5287474 3` UTR CR44743 - chr2L 5287525 3` UTR CR44743 - chr2L_8_5285001 chr2L_5285001 RAL-136 78 chr2L 5342768 5342798 chr2L 5345148 5345178 Doc 6 2380 5.0 1.5 3.2 1.4 2410 chr2L 5342768 intergenic not near genes chr2L 5343973 intergenic not near genes chr2L 5345178 intergenic not near genes chr2L_6_5340001 chr2L_5340001 RAL-136 79 chr2L 5475158 5475163 chr2L 5475262 5475268 4 105 2.0 4.0 3.0 1.0 110 chr2L 5475158 intergenic not near genes chr2L 5475213 intergenic not near genes chr2L 5475268 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-136 80 chr2L 5484706 5484721 chr2L 5484800 5484814 8 90 2.0 2.5 2.2 2.5 108 chr2L 5484706 intergenic not near genes chr2L 5484760 intergenic not near genes chr2L 5484814 intergenic not near genes chr2L_8_5480001 chr2L_5480001 RAL-136 81 chr2L 5573679 5573706 chr2L 5573755 5573782 9 75 4.5 3.0 3.8 1.9 103 chr2L 5573679 intergenic not near genes chr2L 5573730 intergenic not near genes chr2L 5573782 intergenic not near genes chr2L_9_5570001 chr2L_5570001 RAL-136 82 chr2L 5695865 5695878 chr2L 5695954 5695970 5 91 2.0 1.0 1.5 2.0 105 chr2L 5695865 intergenic not near genes chr2L 5695918 intergenic not near genes chr2L 5695970 intergenic not near genes chr2L_5_5695001 chr2L_5695001 RAL-136 83 chr2L 5698941 5698954 chr2L 5699017 5699018 5 74 3.0 1.5 2.2 1.6 77 chr2L 5698941 intergenic not near genes chr2L 5698980 intergenic not near genes chr2L 5699018 intergenic not near genes chr2L_5_5695001 chr2L_5695001 RAL-136 84 chr2L 5758348 5758360 chr2L 5758587 5758603 7 241 1.0 3.0 2.0 2.3 255 chr2L 5758348 intron CG11030 + chr2L 5758476 intron CG11030 + chr2L 5758603 intron CG11030 + chr2L_7_5755001 chr2L_5755001 RAL-136 85 chr2L 5819673 5819702 chr2L 5819757 5819785 6 81 0.0 3.5 1.8 2.1 112 chr2L 5819673 intergenic not near genes chr2L 5819729 intergenic not near genes chr2L 5819785 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-136 86 chr2L 5827724 5827735 chr2L 5836717 5836742 roo 6 9001 6.0 4.0 5.0 1.0 9018 chr2L 5827724 intron TrissinR + chr2L 5832233 intron TrissinR + chr2L 5836742 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-136 87 chr2L 5904460 5904473 chr2L 5904540 5904549 4 76 2.0 0.0 1.0 2.0 89 chr2L 5904460 intron CG9021 - chr2L 5904504 intron CG9021 - chr2L 5904549 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-136 88 chr2L 5926348 5926618 chr2L 5926453 5926697 4 92 0.0 0.0 0.0 4.0 349 chr2L 5926348 intron dsf + chr2L 5926522 intron dsf + chr2L 5926697 intron dsf + chr2L_4_5925001 chr2L_5925001 RAL-136 89 chr2L 6007096 6007124 chr2L 6007171 6007184 6 70 0.5 0.0 0.2 5.0 88 chr2L 6007096 intergenic CG9098 -,Gal - chr2L 6007140 intergenic CG9098 -,Gal - chr2L 6007184 intergenic CG9098 -,Gal - chr2L_6_6005001 chr2L_6005001 RAL-136 90 chr2L 6020210 6020240 chr2L 6020294 6020304 9 74 1.5 4.0 2.8 2.4 94 chr2L 6020210 intergenic not near genes chr2L 6020257 intergenic not near genes chr2L 6020304 intergenic not near genes chr2L_9_6020001 chr2L_6020001 RAL-136 91 chr2L 6136531 6136561 chr2L 6136648 6136663 5 114 0.0 0.5 0.2 4.2 132 chr2L 6136531 intergenic not near genes chr2L 6136597 intergenic not near genes chr2L 6136663 intergenic not near genes chr2L_5_6135001 chr2L_6135001 RAL-136 92 chr2L 6185439 6185473 chr2L 6185517 6185524 6 69 3.0 2.5 2.8 1.6 85 chr2L 6185439 intron CG34380 + chr2L 6185482 intron CG34380 + chr2L 6185524 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-136 93 chr2L 6242977 6242986 chr2L 6243075 6243082 4 96 4.0 2.5 3.2 1.0 105 chr2L 6242977 intergenic not near genes chr2L 6243030 intergenic not near genes chr2L 6243082 intergenic not near genes chr2L_4_6240001 chr2L_6240001 RAL-136 94 chr2L 6426854 6426888 chr2L 6445114 6445148 roo 12 18256 3.5 3.0 3.2 2.9 18294 chr2L 6426854 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-136 95 chr2L 6626892 6626920 chr2L 6626977 6626995 9 81 2.0 6.0 4.0 1.8 103 chr2L 6626892 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6626995 intron Oatp26F - chr2L_9_6625001 chr2L_6625001 RAL-136 96 chr2L 6716608 6716631 chr2L 6716688 6716721 8 86 6.0 2.5 4.2 1.5 113 chr2L 6716608 intergenic AkhR - chr2L 6716664 intergenic AkhR - chr2L 6716721 intergenic not near genes chr2L_8_6715001 chr2L_6715001 RAL-136 97 chr2L 6740747 6740760 chr2L 6740822 6740847 4 82 0.0 4.5 2.2 1.2 100 chr2L 6740747 intergenic not near genes chr2L 6740797 intergenic not near genes chr2L 6740847 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-136 98 chr2L 6771984 6772021 chr2L 6772071 6772085 8 70 3.0 1.5 2.2 2.5 101 chr2L 6771984 intron CG11321 - chr2L 6772034 intron CG11321 - chr2L 6772085 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-136 99 chr2L 6789220 6789229 chr2L 6789524 6789532 4 294 11.5 17.0 14.2 0.3 312 chr2L 6789220 intergenic not near genes chr2L 6789376 intergenic nrv2 - chr2L 6789532 intergenic nrv2 - chr2L_4_6785001 chr2L_6785001 RAL-136 100 chr2L 6788194 6788226 chr2L 6791725 6791757 17 3533 25.0 27.5 26.2 0.6 3563 chr2L 6788194 intergenic not near genes chr2L 6789976 3` UTR nrv2 - chr2L 6791757 exon nrv2 - chr2L_17_6785001 chr2L_6785001 RAL-136 101 chr2L 6793836 6793856 chr2L 6793964 6793985 4 124 0.5 1.5 1.0 2.0 149 chr2L 6793836 intron nrv2 - chr2L 6793910 intron nrv2 - chr2L 6793985 intron nrv2 - chr2L_4_6790001 chr2L_6790001 RAL-136 102 chr2L 6969280 6969300 chr2L 6969356 6969380 10 77 3.5 7.0 5.2 1.6 100 chr2L 6969280 3` UTR snRNP-U1-70K - chr2L 6969330 3` UTR snRNP-U1-70K - chr2L 6969380 3` UTR snRNP-U1-70K - chr2L_10_6965001 chr2L_6965001 RAL-136 103 chr2L 7097186 7097215 chr2L 7097606 7097622 6 416 2.5 1.5 2.0 2.0 436 chr2L 7097186 intergenic not near genes chr2L 7097404 intergenic not near genes chr2L 7097622 intergenic not near genes chr2L_6_7095001 chr2L_7095001 RAL-136 104 chr2L 7244725 7244754 chr2L 7244850 7244879 4 125 1.5 2.5 2.0 1.3 154 chr2L 7244725 intron Ndae1 - chr2L 7244802 intron Ndae1 - chr2L 7244879 intron Ndae1 - chr2L_4_7240001 chr2L_7240001 RAL-136 105 chr2L 7301305 7301330 chr2L 7301381 7301413 6 81 3.0 3.0 3.0 1.5 108 chr2L 7301305 intergenic not near genes chr2L 7301359 intergenic not near genes chr2L 7301413 intergenic not near genes chr2L_6_7300001 chr2L_7300001 RAL-136 106 chr2L 7493673 7493688 chr2L 7493884 7493899 4 211 4.0 1.5 2.8 1.1 226 chr2L 7493673 intron Ziz - chr2L 7493786 intron Ziz - chr2L 7493899 intron Ziz - chr2L_4_7490001 chr2L_7490001 RAL-136 107 chr2L 7493690 7493704 chr2L 7493882 7493913 7 201 2.5 1.5 2.0 2.3 223 chr2L 7493690 intron Ziz - chr2L 7493802 intron Ziz - chr2L 7493913 intron Ziz - chr2L_7_7490001 chr2L_7490001 RAL-136 108 chr2L 7555218 7555232 chr2L 7555294 7555308 6 76 0.5 2.5 1.5 2.4 90 chr2L 7555218 intron RapGAP1 - chr2L 7555263 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-136 109 chr2L 7579897 7579922 chr2L 7579979 7579993 10 77 2.5 2.0 2.2 3.1 96 chr2L 7579897 intergenic not near genes chr2L 7579945 intergenic not near genes chr2L 7579993 intergenic not near genes chr2L_10_7575001 chr2L_7575001 RAL-136 110 chr2L 7664053 7664065 chr2L 7664144 7664159 6 93 2.0 1.0 1.5 2.4 106 chr2L 7664053 intron Slob - chr2L 7664106 intron Slob - chr2L 7664159 intron Slob - chr2L_6_7660001 chr2L_7660001 RAL-136 111 chr2L 7759240 7759253 chr2L 7759321 7759334 5 79 1.0 4.5 2.8 1.3 94 chr2L 7759240 intron CG7196 + chr2L 7759287 intron CG7196 + chr2L 7759334 intron CG7196 + chr2L_5_7755001 chr2L_7755001 RAL-136 112 chr2L 7766628 7766659 chr2L 7766704 7766708 4 64 0.5 0.0 0.2 3.3 80 chr2L 7766628 intergenic not near genes chr2L 7766668 intergenic not near genes chr2L 7766708 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-136 113 chr2L 7839000 7839032 chr2L 7842616 7842628 8 3602 22.0 17.0 19.5 0.4 3628 chr2L 7839000 intergenic not near genes chr2L 7840814 exon CG14537 + chr2L 7842628 intergenic not near genes chr2L_8_7840001 chr2L_7840001 RAL-136 114 chr2L 7916185 7916197 chr2L 7916446 7916458 4 260 3.5 6.5 5.0 0.7 273 chr2L 7916185 intron Snoo - chr2L 7916322 intron Snoo - chr2L 7916458 intron Snoo - chr2L_4_7915001 chr2L_7915001 RAL-136 115 chr2L 8044116 8044130 chr2L 8044195 8044207 5 78 1.5 3.0 2.2 1.6 91 chr2L 8044116 intron CG7466 + chr2L 8044162 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-136 116 chr2L 8167152 8167169 chr2L 8167243 8167260 7 90 2.0 4.5 3.2 1.7 108 chr2L 8167152 intron Piezo + chr2L 8167206 intron Piezo + chr2L 8167260 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-136 117 chr2L 8287324 8287340 chr2L 8287554 8287570 4 230 0.0 4.5 2.2 1.2 246 chr2L 8287324 intron Btk29A - chr2L 8287447 intron Btk29A - chr2L 8287570 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-136 118 chr2L 8371122 8371139 chr2L 8371274 8371277 4 146 1.0 4.0 2.5 1.1 155 chr2L 8371122 intron CG17292 + chr2L 8371200 intron CG17292 + chr2L 8371277 intron CG17292 + chr2L_4_8370001 chr2L_8370001 RAL-136 119 chr2L 8498207 8498231 chr2L 8498288 8498312 6 78 2.5 2.5 2.5 1.7 105 chr2L 8498207 intron Dh31 - chr2L 8498260 intron Dh31 - chr2L 8498312 intron Dh31 - chr2L_6_8495001 chr2L_8495001 RAL-136 120 chr2L 8580197 8580204 chr2L 8580275 8580285 4 80 4.5 2.0 3.2 1.0 88 chr2L 8580197 intron Sema-1a + chr2L 8580241 intron Sema-1a + chr2L 8580285 intron Sema-1a + chr2L_4_8580001 chr2L_8580001 RAL-136 121 chr2L 8612855 8612868 chr2L 8612931 8612945 4 76 3.5 2.0 2.8 1.1 90 chr2L 8612855 intron Sema-1a + chr2L 8612900 intron Sema-1a + chr2L 8612945 intron Sema-1a + chr2L_4_8610001 chr2L_8610001 RAL-136 122 chr2L 8676188 8676196 chr2L 8676384 8676391 7 196 11.0 3.5 7.2 0.9 203 chr2L 8676188 exon Glt + chr2L 8676290 exon Glt + chr2L 8676391 exon Glt + chr2L_7_8675001 chr2L_8675001 RAL-136 123 chr2L 8676200 8676213 chr2L 8676381 8676410 5 189 4.5 3.0 3.8 1.0 210 chr2L 8676200 exon Glt + chr2L 8676305 exon Glt + chr2L 8676410 exon Glt + chr2L_5_8675001 chr2L_8675001 RAL-136 124 chr2L 8723129 8723143 chr2L 8731492 8731519 Tirant 8 8374 2.5 3.5 3.0 2.0 8390 chr2L 8723129 intron raw - chr2L 8727324 intron raw - chr2L 8731519 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-136 125 chr2L 9000277 9000306 chr2L 9007787 9007809 roo 9 7508 2.0 3.5 2.8 2.4 7532 chr2L 9000277 intergenic Try29F + chr2L 9004043 intergenic not near genes chr2L 9007809 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-136 126 chr2L 9084336 9084340 chr2L 16217660 16217660 4 7133322 16.0 18.5 17.2 0.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-136 127 chr2L 9264347 9264382 chr2L 9264443 9264482 7 96 1.5 0.0 0.8 3.9 135 chr2L 9264347 intron Ggamma30A + chr2L 9264414 intron Ggamma30A + chr2L 9264482 intron Ggamma30A + chr2L_7_9260001 chr2L_9260001 RAL-136 128 chr2L 9286955 9286988 chr2L 9287033 9287049 7 73 1.0 3.0 2.0 2.3 94 chr2L 9286955 intron Ggamma30A + chr2L 9287002 intron Ggamma30A + chr2L 9287049 intron Ggamma30A + chr2L_7_9285001 chr2L_9285001 RAL-136 129 chr2L 9308427 9308446 chr2L 9308496 9308512 9 68 3.5 4.0 3.8 1.9 85 chr2L 9308427 intergenic not near genes chr2L 9308470 intergenic not near genes chr2L 9308512 intergenic not near genes chr2L_9_9305001 chr2L_9305001 RAL-136 130 chr2L 9393498 9393504 chr2L 9396465 9396467 jockey 5 2965 9.0 5.0 7.0 0.6 2969 chr2L 9393498 intron Shawl - chr2L 9394982 intron Shawl - chr2L 9396467 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-136 131 chr2L 9393509 9393531 chr2L 9396463 9396498 jockey 10 2962 2.0 5.0 3.5 2.2 2989 chr2L 9393509 intron Shawl - chr2L 9395004 intron Shawl - chr2L 9396498 intron Shawl - chr2L_10_9395001 chr2L_9395001 RAL-136 132 chr2L 9454979 9455002 chr2L 9455079 9455100 5 100 2.0 1.0 1.5 2.0 121 chr2L 9454979 intron numb + chr2L 9455040 intron numb + chr2L 9455100 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-136 133 chr2L 9456931 9456950 chr2L 9457012 9457028 4 80 0.0 0.0 0.0 4.0 97 chr2L 9456931 intron numb + chr2L 9456980 intron numb + chr2L 9457028 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-136 134 chr2L 9460759 9460772 chr2L 9460844 9460850 4 84 4.0 0.0 2.0 1.3 91 chr2L 9460759 intron numb + chr2L 9460804 intron numb + chr2L 9460850 intron numb + chr2L_4_9460001 chr2L_9460001 RAL-136 135 chr2L 9509915 9509943 chr2L 9510053 9510082 11 138 4.5 4.5 4.5 2.0 167 chr2L 9509915 intron CG33298 + chr2L 9509998 intron CG33298 + chr2L 9510082 intron CG33298 + chr2L_11_9505001 chr2L_9505001 RAL-136 136 chr2L 9618893 9618914 chr2L 9618970 9618991 4 77 2.5 2.5 2.5 1.1 98 chr2L 9618893 intron GlcAT-S + chr2L 9618942 intron GlcAT-S + chr2L 9618991 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-136 137 chr2L 9767926 9767939 chr2L 9767981 9767989 7 64 1.0 2.5 1.8 2.5 63 chr2L 9767926 intron,exon ppk18 -,CG4017 + chr2L 9767958 intron,exon ppk18 -,CG4017 + chr2L 9767989 intron,exon ppk18 -,CG4017 + chr2L_7_9765001 chr2L_9765001 RAL-136 138 chr2L 9892520 9892532 chr2L 9892596 9892608 4 76 3.5 6.5 5.0 0.7 88 chr2L 9892520 intron mtDNA-helicase - chr2L 9892564 intron mtDNA-helicase - chr2L 9892608 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-136 139 chr2L 9973732 9973757 chr2L 9980844 9980862 HMS-Beagle 5 7113 4.5 3.5 4.0 1.0 7130 chr2L 9973732 intergenic not near genes chr2L 9977297 intergenic not near genes chr2L 9980862 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-136 140 chr2L 10051743 10051752 chr2L 10051812 10051837 4 76 2.0 5.5 3.8 0.8 94 chr2L 10051743 5` UTR CR44874 + chr2L 10051790 5` UTR CR44874 + chr2L 10051837 5` UTR CR44874 + chr2L_4_10050001 chr2L_10050001 RAL-136 141 chr2L 10087478 10087488 chr2L 10087554 10087564 5 76 4.5 6.0 5.2 0.8 86 chr2L 10087478 intron CG44153 - chr2L 10087521 intron CG44153 - chr2L 10087564 intron CG44153 - chr2L_5_10085001 chr2L_10085001 RAL-136 142 chr2L 10100356 10100378 chr2L 10100439 10100444 5 76 5.5 3.5 4.5 0.9 88 chr2L 10100356 intron CG44153 - chr2L 10100400 intron CG44153 - chr2L 10100444 intron CG44153 - chr2L_5_10100001 chr2L_10100001 RAL-136 143 chr2L 10153202 10153237 chr2L 10153281 10153301 16 72 2.0 1.0 1.5 6.4 99 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153252 intron,intron CG44153 -,CG4839 + chr2L 10153301 intron,intron CG44153 -,CG4839 + chr2L_16_10150001 chr2L_10150001 RAL-136 144 chr2L 10156332 10156349 chr2L 10163801 10163819 blood 7 7469 4.5 5.0 4.8 1.2 7487 chr2L 10156332 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163819 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-136 145 chr2L 10563910 10563939 chr2L 10564003 10564028 5 91 3.5 0.5 2.0 1.7 118 chr2L 10563910 intron Trim9 + chr2L 10563969 intron Trim9 + chr2L 10564028 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-136 146 chr2L 10580795 10580815 chr2L 10580875 10580896 4 77 2.0 4.0 3.0 1.0 101 chr2L 10580795 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580896 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-136 147 chr2L 10862864 10862879 chr2L 10864450 10864468 Rt1c 12 1601 5.0 2.5 3.8 2.5 1604 chr2L 10862864 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864468 3` UTR CR43807 - chr2L_12_10860001 chr2L_10860001 RAL-136 148 chr2L 10891493 10891513 chr2L 10891595 10891621 8 108 1.5 2.0 1.8 2.9 128 chr2L 10891493 intergenic not near genes chr2L 10891557 intergenic not near genes chr2L 10891621 intergenic not near genes chr2L_8_10890001 chr2L_10890001 RAL-136 149 chr2L 10946950 10946970 chr2L 10956162 10956175 roo 11 9212 5.5 8.5 7.0 1.4 9225 chr2L 10946950 intron dpr2 - chr2L 10951562 intron dpr2 - chr2L 10956175 intron dpr2 - chr2L_11_10950001 chr2L_10950001 RAL-136 150 chr2L 11214860 11214875 chr2L 11215075 11215104 8 225 1.5 0.0 0.8 4.4 244 chr2L 11214860 intron ab + chr2L 11214982 intron ab + chr2L 11215104 intron ab + chr2L_8_11210001 chr2L_11210001 RAL-136 151 chr2L 11458950 11458975 chr2L 11459066 11459091 9 116 6.5 2.5 4.5 1.6 141 chr2L 11458950 intergenic not near genes chr2L 11459020 intergenic not near genes chr2L 11459091 intergenic not near genes chr2L_9_11455001 chr2L_11455001 RAL-136 152 chr2L 11563650 11563670 chr2L 11568848 11568865 copia 7 5197 4.0 3.0 3.5 1.6 5215 chr2L 11563650 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568865 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-136 153 chr2L 11614081 11614084 chr2L 11615550 11615579 hopper2 4 1482 1.5 4.0 2.8 1.1 1498 chr2L 11614081 intron kek2 + chr2L 11614830 intron kek2 + chr2L 11615579 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-136 154 chr2L 11649016 11649034 chr2L 11649118 11649123 4 100 3.0 2.5 2.8 1.1 107 chr2L 11649016 intergenic CG6614 - chr2L 11649070 intergenic CG6614 - chr2L 11649123 intergenic CG6614 - chr2L_4_11645001 chr2L_11645001 RAL-136 155 chr2L 11672151 11672160 chr2L 11672258 11672267 4 107 1.0 1.5 1.2 1.8 116 chr2L 11672151 intergenic not near genes chr2L 11672209 intergenic not near genes chr2L 11672267 intergenic not near genes chr2L_4_11670001 chr2L_11670001 RAL-136 156 chr2L 11707063 11707084 chr2L 11707158 11707189 10 101 0.5 1.0 0.8 5.6 126 chr2L 11707063 intergenic not near genes chr2L 11707126 intergenic not near genes chr2L 11707189 intergenic not near genes chr2L_10_11705001 chr2L_11705001 RAL-136 157 chr2L 11713508 11713535 chr2L 11720975 11721003 blood 11 7468 4.0 2.0 3.0 2.8 7495 chr2L 11713508 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721003 intergenic CR44143 + chr2L_11_11715001 chr2L_11715001 RAL-136 158 chr2L 11732951 11732962 chr2L 11733028 11733039 4 77 0.0 2.0 1.0 2.0 88 chr2L 11732951 intergenic not near genes chr2L 11732995 intergenic not near genes chr2L 11733039 intergenic not near genes chr2L_4_11730001 chr2L_11730001 RAL-136 159 chr2L 11924603 11924623 chr2L 11924711 11924716 4 103 2.0 3.5 2.8 1.1 113 chr2L 11924603 intron Pde1c - chr2L 11924660 intron Pde1c - chr2L 11924716 intron Pde1c - chr2L_4_11920001 chr2L_11920001 RAL-136 160 chr2L 11933097 11933127 chr2L 11933205 11933233 6 107 1.5 1.5 1.5 2.4 136 chr2L 11933097 intergenic not near genes chr2L 11933165 intergenic not near genes chr2L 11933233 intergenic not near genes chr2L_6_11930001 chr2L_11930001 RAL-136 161 chr2L 12146666 12146678 chr2L 12146748 12146759 5 82 3.5 0.0 1.8 1.8 93 chr2L 12146666 intron CG31760 + chr2L 12146712 intron CG31760 + chr2L 12146759 intron CG31760 + chr2L_5_12145001 chr2L_12145001 RAL-136 162 chr2L 12236284 12236321 chr2L 12236362 12236399 12 74 2.5 1.0 1.8 4.3 115 chr2L 12236284 intron aret + chr2L 12236342 intron aret + chr2L 12236399 intron aret + chr2L_12_12235001 chr2L_12235001 RAL-136 163 chr2L 12254037 12254050 chr2L 12254118 12254142 4 88 0.5 0.0 0.2 3.3 105 chr2L 12254037 intron aret + chr2L 12254090 intron aret + chr2L 12254142 intron aret + chr2L_4_12250001 chr2L_12250001 RAL-136 164 chr2L 12299466 12299488 chr2L 12299536 12299567 9 75 4.0 1.5 2.8 2.4 101 chr2L 12299466 intron aret + chr2L 12299516 intron aret + chr2L 12299567 intron aret + chr2L_9_12295001 chr2L_12295001 RAL-136 165 chr2L 12305410 12305438 chr2L 12305498 12305526 11 85 1.0 2.0 1.5 4.4 116 chr2L 12305410 intron aret + chr2L 12305468 intron aret + chr2L 12305526 intron aret + chr2L_11_12305001 chr2L_12305001 RAL-136 166 chr2L 12454139 12454153 chr2L 12454215 12454233 5 77 3.0 3.5 3.2 1.2 94 chr2L 12454139 intergenic not near genes chr2L 12454186 intergenic not near genes chr2L 12454233 intergenic not near genes chr2L_5_12450001 chr2L_12450001 RAL-136 167 chr2L 12487901 12487920 chr2L 12487966 12488001 10 75 5.0 1.0 3.0 2.5 100 chr2L 12487901 intron bun - chr2L 12487951 intron bun - chr2L 12488001 intron bun - chr2L_10_12485001 chr2L_12485001 RAL-136 168 chr2L 12529277 12529446 chr2L 12529382 12529522 8 78 1.0 2.0 1.5 3.2 245 chr2L 12529277 intron bun - chr2L 12529400 intron bun - chr2L 12529522 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-136 169 chr2L 12728927 12728947 chr2L 12729166 12729187 pogo 6 238 1.5 1.5 1.5 2.4 260 chr2L 12728927 intron MRP + chr2L 12729057 intron MRP + chr2L 12729187 exon MRP + chr2L_6_12725001 chr2L_12725001 RAL-136 170 chr2L 12739184 12739206 chr2L 12743953 12743987 Doc 8 4776 1.5 5.0 3.2 1.9 4803 chr2L 12739184 exon MRP + chr2L 12741586 intron MRP + chr2L 12743987 exon MRP + chr2L_8_12740001 chr2L_12740001 RAL-136 171 chr2L 12751311 12751337 chr2L 12751394 12751418 7 81 2.0 7.0 4.5 1.3 107 chr2L 12751311 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751418 intergenic not near genes chr2L_7_12750001 chr2L_12750001 RAL-136 172 chr2L 12861703 12861726 chr2L 12863162 12863183 hobo 12 1460 4.0 3.0 3.5 2.7 1480 chr2L 12861703 intergenic not near genes chr2L 12862443 intergenic not near genes chr2L 12863183 intergenic not near genes chr2L_12_12860001 chr2L_12860001 RAL-136 173 chr2L 12933850 12933876 chr2L 12941317 12941331 blood 11 7464 3.5 3.0 3.2 2.6 7481 chr2L 12933850 intergenic not near genes chr2L 12937590 intergenic not near genes chr2L 12941331 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-136 174 chr2L 13139469 13139488 chr2L 13139542 13139576 6 80 2.0 1.5 1.8 2.1 107 chr2L 13139469 intergenic not near genes chr2L 13139522 intergenic not near genes chr2L 13139576 intergenic not near genes chr2L_6_13135001 chr2L_13135001 RAL-136 175 chr2L 13212581 13212598 chr2L 13214585 13214607 6 2005 14.5 14.0 14.2 0.4 2026 chr2L 13212581 3` UTR kek4 - chr2L 13213594 exon kek4 - chr2L 13214607 exon kek4 - chr2L_6_13210001 chr2L_13210001 RAL-136 176 chr2L 13266382 13266408 chr2L 13266466 13266482 9 83 2.5 2.0 2.2 2.8 100 chr2L 13266382 intron CG44085 + chr2L 13266432 intron CG44085 + chr2L 13266482 intron CG44085 + chr2L_9_13265001 chr2L_13265001 RAL-136 177 chr2L 13339818 13339830 chr2L 13339888 13339891 5 72 4.0 6.0 5.0 0.8 73 chr2L 13339818 intergenic not near genes chr2L 13339854 intergenic not near genes chr2L 13339891 intergenic not near genes chr2L_5_13335001 chr2L_13335001 RAL-136 178 chr2L 13369310 13369339 chr2L 13369386 13369400 13 71 1.0 2.0 1.5 5.2 90 chr2L 13369310 5` UTR CG31855 + chr2L 13369355 5` UTR CG31855 + chr2L 13369400 5` UTR CG31855 + chr2L_13_13365001 chr2L_13365001 RAL-136 179 chr2L 13405647 13405665 chr2L 13410444 13410448 Doc 14 4794 1.0 2.0 1.5 5.6 4801 chr2L 13405647 exon CG7110 + chr2L 13408048 intron CG7110 + chr2L 13410448 intron CG7110 + chr2L_14_13405001 chr2L_13405001 RAL-136 180 chr2L 13481451 13481456 chr2L 13482058 13482063 jockey 4 607 5.0 3.5 4.2 0.8 612 chr2L 13481451 intron CG42784 + chr2L 13481757 intron CG42784 + chr2L 13482063 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-136 181 chr2L 13693025 13693040 chr2L 13693088 13693105 6 63 1.5 4.5 3.0 1.5 80 chr2L 13693025 intron CG31814 - chr2L 13693065 intron CG31814 - chr2L 13693105 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-136 182 chr2L 13699564 13699587 chr2L 13699639 13699655 6 70 1.0 6.0 3.5 1.3 91 chr2L 13699564 intron CG31814 - chr2L 13699610 intron CG31814 - chr2L 13699655 intron CG31814 - chr2L_6_13695001 chr2L_13695001 RAL-136 183 chr2L 13713259 13713291 chr2L 13713371 13713402 4 106 2.0 2.5 2.2 1.2 143 chr2L 13713259 intron CG31814 - chr2L 13713330 intron CG31814 - chr2L 13713402 intron CG31814 - chr2L_4_13710001 chr2L_13710001 RAL-136 184 chr2L 13761820 13761836 chr2L 13762913 13762932 Doc 4 1098 3.0 1.5 2.2 1.2 1112 chr2L 13761820 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762932 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-136 185 chr2L 13800180 13800207 chr2L 13800276 13800309 5 102 1.0 2.0 1.5 2.0 129 chr2L 13800180 intergenic not near genes chr2L 13800244 intergenic not near genes chr2L 13800309 intergenic not near genes chr2L_5_13800001 chr2L_13800001 RAL-136 186 chr2L 13839875 13839909 chr2L 13839966 13839997 6 88 1.0 1.5 1.2 2.7 122 chr2L 13839875 intron,3` UTR CenG1A +,CG33307 - chr2L 13839936 intron,3` UTR CenG1A +,CG33307 - chr2L 13839997 intron,3` UTR CenG1A +,CG33307 - chr2L_6_13835001 chr2L_13835001 RAL-136 187 chr2L 13853085 13853118 chr2L 13862234 13862266 roo 9 9148 1.5 3.0 2.2 2.8 9181 chr2L 13853085 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862266 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-136 188 chr2L 13981532 13981552 chr2L 13981613 13981643 5 81 4.0 2.0 3.0 1.2 111 chr2L 13981532 exon NimC2 + chr2L 13981588 intron NimC2 + chr2L 13981643 intron NimC2 + chr2L_5_13980001 chr2L_13980001 RAL-136 189 chr2L 14033267 14033272 chr2L 14033384 14033393 4 118 2.0 3.0 2.5 1.1 126 chr2L 14033267 3` UTR CR45284 - chr2L 14033330 3` UTR CR45284 - chr2L 14033393 3` UTR CR45284 - chr2L_4_14030001 chr2L_14030001 RAL-136 190 chr2L 14151605 14151620 chr2L 14151670 14151697 4 74 1.0 1.0 1.0 2.0 92 chr2L 14151605 intron CG17341 + chr2L 14151651 intron CG17341 + chr2L 14151697 intron CG17341 + chr2L_4_14150001 chr2L_14150001 RAL-136 191 chr2L 14190145 14190157 chr2L 14190721 14190733 4 574 10.0 5.0 7.5 0.5 588 chr2L 14190145 intron Dyrk2 - chr2L 14190439 intron Dyrk2 - chr2L 14190733 intron Dyrk2 - chr2L_4_14190001 chr2L_14190001 RAL-136 192 chr2L 14190158 14190174 chr2L 14190720 14190742 7 568 5.0 4.5 4.8 1.2 584 chr2L 14190158 intron Dyrk2 - chr2L 14190450 intron Dyrk2 - chr2L 14190742 intron Dyrk2 - chr2L_7_14190001 chr2L_14190001 RAL-136 193 chr2L 14246284 14246306 chr2L 14246362 14246384 6 78 0.0 0.0 0.0 6.0 100 chr2L 14246284 intergenic not near genes chr2L 14246334 intergenic not near genes chr2L 14246384 intergenic not near genes chr2L_6_14245001 chr2L_14245001 RAL-136 194 chr2L 14481571 14481603 chr2L 14481652 14481684 6 78 2.5 2.0 2.2 1.9 113 chr2L 14481571 intergenic not near genes chr2L 14481628 intergenic not near genes chr2L 14481684 intergenic not near genes chr2L_6_14480001 chr2L_14480001 RAL-136 195 chr2L 14526053 14526072 chr2L 14526368 14526388 6 313 3.0 5.5 4.2 1.2 335 chr2L 14526053 intergenic CG33648 + chr2L 14526220 intergenic not near genes chr2L 14526388 intergenic not near genes chr2L_6_14525001 chr2L_14525001 RAL-136 196 chr2L 14564209 14564231 chr2L 14564273 14564291 7 60 3.0 2.5 2.8 1.8 82 chr2L 14564209 intergenic CG3473 - chr2L 14564250 intergenic not near genes chr2L 14564291 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-136 197 chr2L 14588389 14588419 chr2L 14588541 14588564 10 149 2.5 5.5 4.0 2.0 175 chr2L 14588389 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588564 intergenic CG42680 - chr2L_10_14585001 chr2L_14585001 RAL-136 198 chr2L 14642568 14642600 chr2L 14651731 14651763 roo 8 9159 1.0 2.0 1.5 3.2 9195 chr2L 14642568 intron osp - chr2L 14647166 intron osp - chr2L 14651763 intron osp - chr2L_8_14645001 chr2L_14645001 RAL-136 199 chr2L 14707208 14707239 chr2L 14707327 14707358 13 117 3.5 0.5 2.0 4.3 150 chr2L 14707208 intergenic not near genes chr2L 14707283 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_13_14705001 chr2L_14705001 RAL-136 200 chr2L 14731999 14732026 chr2L 14732139 14732153 6 138 3.5 1.0 2.2 1.9 154 chr2L 14731999 intergenic not near genes chr2L 14732076 intergenic CR44857 - chr2L 14732153 intergenic CR44857 - chr2L_6_14730001 chr2L_14730001 RAL-136 201 chr2L 14803878 14803911 chr2L 14809080 14809114 copia 14 5199 1.5 4.0 2.8 3.7 5236 chr2L 14803878 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_14_14805001 chr2L_14805001 RAL-136 202 chr2L 14840990 14840996 chr2L 14841064 14841083 4 84 2.5 2.0 2.2 1.2 93 chr2L 14840990 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841083 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-136 203 chr2L 14889953 14889963 chr2L 14890377 14890388 jockey 4 424 7.5 3.0 5.2 0.6 435 chr2L 14889953 intergenic not near genes chr2L 14890170 intergenic not near genes chr2L 14890388 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-136 204 chr2L 14889967 14889988 chr2L 14890376 14890413 jockey 11 421 4.0 3.0 3.5 2.4 446 chr2L 14889967 intergenic not near genes chr2L 14890190 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_11_14890001 chr2L_14890001 RAL-136 205 chr2L 14905847 14905852 chr2L 14907238 14907255 5 1394 5.0 22.5 13.8 0.3 1408 chr2L 14905847 intergenic not near genes chr2L 14906551 intergenic not near genes chr2L 14907255 intergenic CG42313 - chr2L_5_14905001 chr2L_14905001 RAL-136 206 chr2L 14999103 14999120 chr2L 14999178 14999200 7 79 1.5 2.0 1.8 2.5 97 chr2L 14999103 intergenic not near genes chr2L 14999152 intergenic not near genes chr2L 14999200 intergenic not near genes chr2L_7_14995001 chr2L_14995001 RAL-136 207 chr2L 15077909 15078085 chr2L 15077982 15078173 5 83 1.5 2.0 1.8 1.8 264 chr2L 15077909 intron CG15270 + chr2L 15078041 intron CG15270 + chr2L 15078173 intron CG15270 + chr2L_5_15075001 chr2L_15075001 RAL-136 208 chr2L 15156606 15156635 chr2L 15156688 15156715 7 76 4.5 1.5 3.0 1.8 109 chr2L 15156606 intergenic not near genes chr2L 15156660 intergenic not near genes chr2L 15156715 intergenic not near genes chr2L_7_15155001 chr2L_15155001 RAL-136 209 chr2L 15204851 15204870 chr2L 15204993 15205012 4 142 2.0 3.5 2.8 1.1 161 chr2L 15204851 intergenic not near genes chr2L 15204932 intergenic not near genes chr2L 15205012 intergenic not near genes chr2L_4_15200001 chr2L_15200001 RAL-136 210 chr2L 15226375 15226395 chr2L 15226445 15226471 5 73 2.5 0.5 1.5 2.0 96 chr2L 15226375 intergenic not near genes chr2L 15226423 intergenic not near genes chr2L 15226471 intergenic not near genes chr2L_5_15225001 chr2L_15225001 RAL-136 211 chr2L 15305504 15305519 chr2L 15305578 15305602 5 84 1.5 1.5 1.5 2.0 98 chr2L 15305504 intergenic not near genes chr2L 15305553 intergenic not near genes chr2L 15305602 intergenic not near genes chr2L_5_15305001 chr2L_15305001 RAL-136 212 chr2L 15390255 15390283 chr2L 15390332 15390360 8 75 2.5 4.0 3.2 1.9 105 chr2L 15390255 intergenic not near genes chr2L 15390308 intergenic not near genes chr2L 15390360 intergenic not near genes chr2L_8_15390001 chr2L_15390001 RAL-136 213 chr2L 15500877 15500894 chr2L 15501111 15501139 6 242 1.5 1.0 1.2 2.7 262 chr2L 15500877 intron lace + chr2L 15501008 intron lace + chr2L 15501139 intron lace + chr2L_6_15500001 chr2L_15500001 RAL-136 214 chr2L 15586412 15586435 chr2L 15593463 15593477 297 4 7046 2.0 1.0 1.5 1.6 7065 chr2L 15586412 intergenic not near genes chr2L 15589944 intergenic not near genes chr2L 15593477 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-136 215 chr2L 15761099 15761108 chr2L 15761179 15761188 4 79 0.0 2.0 1.0 2.0 89 chr2L 15761099 intron Gli - chr2L 15761144 intron Gli - chr2L 15761188 intron Gli - chr2L_4_15760001 chr2L_15760001 RAL-136 216 chr2L 15915652 15915686 chr2L 15915729 15915749 4 74 4.0 2.5 3.2 1.0 97 chr2L 15915652 intron beat-Ib - chr2L 15915700 intron beat-Ib - chr2L 15915749 intron beat-Ib - chr2L_4_15915001 chr2L_15915001 RAL-136 217 chr2L 15956025 15956049 chr2L 15957491 15957501 hobo 4 1463 7.0 1.5 4.2 0.8 1476 chr2L 15956025 intron beat-Ib - chr2L 15956763 intron beat-Ib - chr2L 15957501 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-136 218 chr2L 16051621 16051640 chr2L 16051686 16051701 7 74 4.0 3.5 3.8 1.5 80 chr2L 16051621 intron beat-Ia + chr2L 16051661 intron beat-Ia + chr2L 16051701 intron beat-Ia + chr2L_7_16050001 chr2L_16050001 RAL-136 219 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 12 145889 21.5 18.5 20.0 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-136 220 chr2L 16141166 16141195 chr2L 16146373 16146402 copia 6 5201 0.5 2.0 1.2 2.7 5236 chr2L 16141166 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-136 221 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 21.5 18.5 20.0 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-136 222 chr2L 16243693 16243856 chr2L 16243775 16243936 6 86 1.0 3.0 2.0 2.0 243 chr2L 16243693 exon CG42818 + chr2L 16243814 exon CG42818 + chr2L 16243936 exon CG42818 + chr2L_6_16240001 chr2L_16240001 RAL-136 223 chr2L 16280257 16280282 chr2L 16281425 16281427 1360 5 1157 4.0 3.5 3.8 1.0 1170 chr2L 16280257 intron crp - chr2L 16280842 intron crp - chr2L 16281427 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-136 224 chr2L 16391805 16391832 chr2L 16391879 16391908 8 75 2.0 2.0 2.0 2.7 103 chr2L 16391805 intergenic not near genes chr2L 16391856 intergenic not near genes chr2L 16391908 intergenic not near genes chr2L_8_16390001 chr2L_16390001 RAL-136 225 chr2L 16397624 16397657 chr2L 16397772 16397773 14 142 3.5 2.0 2.8 3.7 149 chr2L 16397624 intergenic not near genes chr2L 16397698 intergenic not near genes chr2L 16397773 intergenic not near genes chr2L_14_16395001 chr2L_16395001 RAL-136 226 chr2L 16504992 16505001 chr2L 16505102 16505111 4 110 0.0 0.5 0.2 3.3 119 chr2L 16504992 intron Tpr2 + chr2L 16505052 intron Tpr2 + chr2L 16505111 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-136 227 chr2L 16505006 16505010 chr2L 16505101 16505115 4 101 0.0 0.5 0.2 3.3 109 chr2L 16505006 intron Tpr2 + chr2L 16505060 intron Tpr2 + chr2L 16505115 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-136 228 chr2L 16583564 16583584 chr2L 16583698 16583718 6 133 1.5 2.0 1.8 2.1 154 chr2L 16583564 intron CG42389 + chr2L 16583641 intron CG42389 + chr2L 16583718 intron CG42389 + chr2L_6_16580001 chr2L_16580001 RAL-136 229 chr2L 16852791 16852801 chr2L 16859933 16859943 Doc4-element 4 7142 0.0 3.0 1.5 1.6 7152 chr2L 16852791 intergenic CG31810 - chr2L 16856367 intron CG31809 - chr2L 16859943 intergenic CG6012 - chr2L_4_16855001 chr2L_16855001 RAL-136 230 chr2L 17103006 17103016 chr2L 17103094 17103104 6 87 0.5 2.5 1.5 2.4 98 chr2L 17103006 intergenic not near genes chr2L 17103055 intergenic not near genes chr2L 17103104 intergenic not near genes chr2L_6_17100001 chr2L_17100001 RAL-136 231 chr2L 17129842 17129876 chr2L 17129947 17129974 4 100 3.5 1.5 2.5 1.1 132 chr2L 17129842 intergenic not near genes chr2L 17129908 intergenic not near genes chr2L 17129974 intergenic not near genes chr2L_4_17125001 chr2L_17125001 RAL-136 232 chr2L 17158738 17158740 chr2L 17158835 17158843 4 100 2.0 2.0 2.0 1.3 105 chr2L 17158738 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158790 intron,intron CG34106 +,beat-IIIa + chr2L 17158843 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-136 233 chr2L 17159868 17159881 chr2L 17159944 17159946 4 76 1.0 2.5 1.8 1.4 78 chr2L 17159868 intron,intron CG34106 +,beat-IIIa + chr2L 17159907 intron,intron CG34106 +,beat-IIIa + chr2L 17159946 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-136 234 chr2L 17167563 17167596 chr2L 17167804 17167834 pogo 4 238 1.5 1.5 1.5 1.6 271 chr2L 17167563 intron,intron CG34106 +,beat-IIIa + chr2L 17167698 intron,intron CG34106 +,beat-IIIa + chr2L 17167834 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-136 235 chr2L 17199158 17199192 chr2L 17200625 17200652 hobo 4 1461 4.5 0.5 2.5 1.1 1494 chr2L 17199158 intron beat-IIIc - chr2L 17199905 intron beat-IIIc - chr2L 17200652 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-136 236 chr2L 17273194 17273230 chr2L 17277974 17277990 F-element 12 4777 1.5 4.0 2.8 3.2 4796 chr2L 17273194 intergenic not near genes chr2L 17275592 intergenic not near genes chr2L 17277990 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-136 237 chr2L 17360026 17360049 chr2L 17360204 17360225 5 177 1.5 0.0 0.8 2.8 199 chr2L 17360026 intergenic not near genes chr2L 17360126 intergenic not near genes chr2L 17360225 intergenic not near genes chr2L_5_17360001 chr2L_17360001 RAL-136 238 chr2L 17466425 17466457 chr2L 17466518 17466550 8 91 0.0 3.0 1.5 3.2 125 chr2L 17466425 intron BicD - chr2L 17466488 intron BicD - chr2L 17466550 intron BicD - chr2L_8_17465001 chr2L_17465001 RAL-136 239 chr2L 17578278 17578285 chr2L 17578423 17578429 4 145 4.0 2.5 3.2 1.0 151 chr2L 17578278 intergenic not near genes chr2L 17578354 intergenic not near genes chr2L 17578429 intergenic not near genes chr2L_4_17575001 chr2L_17575001 RAL-136 240 chr2L 17613459 17613476 chr2L 17613654 17613673 7 193 2.5 2.5 2.5 2.0 214 chr2L 17613459 intergenic not near genes chr2L 17613566 intergenic not near genes chr2L 17613673 intergenic not near genes chr2L_7_17610001 chr2L_17610001 RAL-136 241 chr2L 17727873 17727882 chr2L 17729340 17729348 hobo 4 1466 1.0 2.5 1.8 1.4 1475 chr2L 17727873 intron CadN - chr2L 17728610 intron CadN - chr2L 17729348 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-136 242 chr2L 17819936 17819955 chr2L 17825139 17825158 copia 4 5202 1.0 3.0 2.0 1.3 5222 chr2L 17819936 intron CadN2 - chr2L 17822547 intron CadN2 - chr2L 17825158 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-136 243 chr2L 17893395 17893415 chr2L 17894107 17894127 5 712 1.0 1.5 1.2 2.3 732 chr2L 17893395 intergenic CR43420 + chr2L 17893761 intergenic CR43420 + chr2L 17894127 5` UTR CR43420 + chr2L_5_17890001 chr2L_17890001 RAL-136 244 chr2L 17911964 17911989 chr2L 17914138 17914167 pogo 8 2176 4.5 1.0 2.8 2.1 2203 chr2L 17911964 intergenic not near genes chr2L 17913066 intergenic not near genes chr2L 17914167 intergenic CG43271 - chr2L_8_17910001 chr2L_17910001 RAL-136 245 chr2L 17987316 17987332 chr2L 17991524 17991536 6 4206 7.5 12.5 10.0 0.5 4220 chr2L 17987316 exon CG5681 + chr2L 17989426 intergenic not near genes chr2L 17991536 3` UTR Prosbeta5R2 + chr2L_6_17985001 chr2L_17985001 RAL-136 246 chr2L 18051884 18051909 chr2L 18061028 18061056 roo 12 9144 5.5 3.0 4.2 2.3 9172 chr2L 18051884 intron rdo + chr2L 18056470 intron rdo + chr2L 18061056 intron rdo + chr2L_12_18055001 chr2L_18055001 RAL-136 247 chr2L 18111243 18111263 chr2L 18111334 18111348 5 89 4.0 2.5 3.2 1.2 105 chr2L 18111243 intergenic not near genes chr2L 18111296 intergenic not near genes chr2L 18111348 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-136 248 chr2L 18264065 18264095 chr2L 18264141 18264172 5 77 1.5 1.0 1.2 2.3 107 chr2L 18264065 intron CG42750 - chr2L 18264118 intron CG42750 - chr2L 18264172 intron CG42750 - chr2L_5_18260001 chr2L_18260001 RAL-136 249 chr2L 18274042 18274073 chr2L 18274128 18274159 10 83 2.5 2.0 2.2 3.1 117 chr2L 18274042 intron CG42750 - chr2L 18274100 intron CG42750 - chr2L 18274159 intron CG42750 - chr2L_10_18270001 chr2L_18270001 RAL-136 250 chr2L 18303983 18304001 chr2L 18304063 18304092 6 89 3.0 0.0 1.5 2.4 109 chr2L 18303983 intergenic not near genes chr2L 18304038 intergenic not near genes chr2L 18304092 intergenic not near genes chr2L_6_18300001 chr2L_18300001 RAL-136 251 chr2L 18334621 18334630 chr2L 18334697 18334711 4 82 3.0 1.5 2.2 1.2 90 chr2L 18334621 intron Fas3 + chr2L 18334666 intron Fas3 + chr2L 18334711 intron Fas3 + chr2L_4_18330001 chr2L_18330001 RAL-136 252 chr2L 18538581 18538597 chr2L 18538657 18538676 5 79 0.0 4.0 2.0 1.7 95 chr2L 18538581 intron Pde11 - chr2L 18538628 intron Pde11 - chr2L 18538676 intron Pde11 - chr2L_5_18535001 chr2L_18535001 RAL-136 253 chr2L 18664588 18664611 chr2L 18664655 18664687 9 73 1.5 2.0 1.8 3.2 99 chr2L 18664588 intergenic not near genes chr2L 18664638 intergenic not near genes chr2L 18664687 intergenic not near genes chr2L_9_18660001 chr2L_18660001 RAL-136 254 chr2L 18812571 18812587 chr2L 18812821 18812841 4 255 1.5 2.5 2.0 1.3 270 chr2L 18812571 intergenic CG17325 +,CG42305 + chr2L 18812706 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812841 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-136 255 chr2L 18883858 18883887 chr2L 18883938 18883969 12 81 3.0 3.5 3.2 2.9 111 chr2L 18883858 intergenic not near genes chr2L 18883914 intergenic not near genes chr2L 18883969 intergenic not near genes chr2L_12_18880001 chr2L_18880001 RAL-136 256 chr2L 18981392 18981419 chr2L 18981475 18981500 7 78 3.0 3.0 3.0 1.8 108 chr2L 18981392 intron Swip-1 - chr2L 18981446 intron Swip-1 - chr2L 18981500 intron Swip-1 - chr2L_7_18980001 chr2L_18980001 RAL-136 257 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744194 13.0 17.5 15.2 0.2 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-136 258 chr2L 19144929 19144956 chr2L 19145007 19145034 5 74 2.0 4.0 3.0 1.2 105 chr2L 19144929 intron brat + chr2L 19144982 intron brat + chr2L 19145034 intron brat + chr2L_5_19140001 chr2L_19140001 RAL-136 259 chr2L 19147376 19147402 chr2L 19154411 19154437 297 7 7034 3.5 2.0 2.8 1.8 7061 chr2L 19147376 intron brat + chr2L 19150906 intron brat + chr2L 19154437 intron brat + chr2L_7_19150001 chr2L_19150001 RAL-136 260 chr2L 19156888 19156917 chr2L 19156975 19156995 10 83 2.5 1.5 2.0 3.3 107 chr2L 19156888 intron brat + chr2L 19156942 intron brat + chr2L 19156995 intron brat + chr2L_10_19155001 chr2L_19155001 RAL-136 261 chr2L 19211247 19211280 chr2L 19211357 19211380 8 108 1.0 3.0 2.0 2.7 133 chr2L 19211247 intergenic not near genes chr2L 19211314 intergenic not near genes chr2L 19211380 intergenic not near genes chr2L_8_19210001 chr2L_19210001 RAL-136 262 chr2L 19246834 19246852 chr2L 19246915 19246933 5 80 3.5 1.0 2.2 1.6 99 chr2L 19246834 intergenic not near genes chr2L 19246884 intergenic not near genes chr2L 19246933 intergenic not near genes chr2L_5_19245001 chr2L_19245001 RAL-136 263 chr2L 19267983 19268012 chr2L 19268059 19268090 7 71 3.5 5.5 4.5 1.3 107 chr2L 19267983 intergenic not near genes chr2L 19268036 intergenic not near genes chr2L 19268090 intergenic not near genes chr2L_7_19265001 chr2L_19265001 RAL-136 264 chr2L 19327125 19327156 chr2L 19327201 19327228 8 65 2.0 4.0 3.0 2.0 103 chr2L 19327125 intergenic CR45258 + chr2L 19327176 intergenic CR45258 + chr2L 19327228 intergenic CR45258 + chr2L_8_19325001 chr2L_19325001 RAL-136 265 chr2L 19345012 19345050 chr2L 19357221 19357251 blood 10 12204 1.5 3.0 2.2 3.1 12239 chr2L 19345012 intron dnt - chr2L 19351132 intron dnt - chr2L 19357251 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-136 266 chr2L 19357551 19357566 chr2L 19357641 19357656 7 89 2.5 1.5 2.0 2.3 105 chr2L 19357551 intron dnt - chr2L 19357604 intron dnt - chr2L 19357656 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-136 267 chr2L 19369703 19369722 chr2L 19369829 19369854 7 128 1.5 2.0 1.8 2.5 151 chr2L 19369703 intergenic not near genes chr2L 19369778 intergenic not near genes chr2L 19369854 intergenic not near genes chr2L_7_19365001 chr2L_19365001 RAL-136 268 chr2L 19374492 19374511 chr2L 19374601 19374620 5 106 3.5 1.5 2.5 1.4 128 chr2L 19374492 intergenic not near genes chr2L 19374556 intergenic not near genes chr2L 19374620 intergenic not near genes chr2L_5_19370001 chr2L_19370001 RAL-136 269 chr2L 19378338 19378353 chr2L 19378421 19378435 5 83 7.0 1.0 4.0 1.0 97 chr2L 19378338 intergenic not near genes chr2L 19378386 intergenic not near genes chr2L 19378435 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-136 270 chr2L 19378355 19378371 chr2L 19378420 19378451 6 78 4.0 1.0 2.5 1.7 96 chr2L 19378355 intergenic not near genes chr2L 19378403 intergenic not near genes chr2L 19378451 intergenic not near genes chr2L_6_19375001 chr2L_19375001 RAL-136 271 chr2L 19380513 19380527 chr2L 19380588 19380599 8 74 5.0 4.5 4.8 1.4 86 chr2L 19380513 intergenic CG17350 + chr2L 19380556 intergenic CG17350 + chr2L 19380599 intergenic CG17350 + chr2L_8_19380001 chr2L_19380001 RAL-136 272 chr2L 19441065 19441089 chr2L 19441142 19441166 10 76 3.5 7.0 5.2 1.6 101 chr2L 19441065 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_10_19440001 chr2L_19440001 RAL-136 273 chr2L 19562544 19562562 chr2L 19562614 19562636 8 77 1.0 3.5 2.2 2.5 92 chr2L 19562544 intron Tep5 + chr2L 19562590 intron Tep5 + chr2L 19562636 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-136 274 chr2L 19620097 19620131 chr2L 19621085 19621116 jockey 12 982 3.0 3.5 3.2 2.9 1019 chr2L 19620097 intron Lar + chr2L 19620606 intron Lar + chr2L 19621116 intron Lar + chr2L_12_19620001 chr2L_19620001 RAL-136 275 chr2L 16392493 16392495 chr2L 19641791 19641799 5 3249301 12.0 8.5 10.2 0.4 3249306 chr2L 16392493 intergenic not near genes chr2L 18017146 intron rdo + chr2L 19641799 intron Lar + chr2L_5_18015001 chr2L_18015001 RAL-136 276 chr2L 19652571 19652603 chr2L 19674007 19674038 opus 5 21435 4.5 1.0 2.8 1.3 21467 chr2L 19652571 intron Lar + chr2L 19663304 intron Lar + chr2L 19674038 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-136 277 chr2L 19689061 19689083 chr2L 19689165 19689180 9 101 4.0 4.5 4.2 1.7 119 chr2L 19689061 intron Lar + chr2L 19689120 intron Lar + chr2L 19689180 intron Lar + chr2L_9_19685001 chr2L_19685001 RAL-136 278 chr2L 19703560 19703570 chr2L 19712681 19712705 roo 5 9132 6.0 1.5 3.8 1.0 9145 chr2L 19703560 intron Lar + chr2L 19708132 intron Lar + chr2L 19712705 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-136 279 chr2L 19712697 19712721 chr2L 19712770 19712778 10 69 2.0 2.5 2.2 3.1 81 chr2L 19712697 intron Lar + chr2L 19712738 intron Lar + chr2L 19712778 intron Lar + chr2L_10_19710001 chr2L_19710001 RAL-136 280 chr2L 19722766 19722775 chr2L 19723354 19723362 4 587 9.5 2.5 6.0 0.6 596 chr2L 19722766 intron Lar + chr2L 19723064 intron Lar + chr2L 19723362 intron Lar + chr2L_4_19720001 chr2L_19720001 RAL-136 281 chr2L 19742092 19742098 chr2L 19742165 19742175 4 76 10.0 2.0 6.0 0.6 83 chr2L 19742092 intergenic not near genes chr2L 19742134 intergenic not near genes chr2L 19742175 intergenic not near genes chr2L_4_19740001 chr2L_19740001 RAL-136 282 chr2L 19791156 19791170 chr2L 19791230 19791245 7 78 4.0 3.5 3.8 1.5 89 chr2L 19791156 intron CdGAPr - chr2L 19791200 intron CdGAPr - chr2L 19791245 intron CdGAPr - chr2L_7_19790001 chr2L_19790001 RAL-136 283 chr2L 19794014 19794040 chr2L 19794097 19794124 9 83 0.5 3.0 1.8 3.2 110 chr2L 19794014 intron fs(2)ltoPP43 - chr2L 19794069 intron fs(2)ltoPP43 - chr2L 19794124 intron fs(2)ltoPP43 - chr2L_9_19790001 chr2L_19790001 RAL-136 284 chr2L 19856393 19856423 chr2L 19856636 19856663 6 242 4.0 3.0 3.5 1.3 270 chr2L 19856393 intron sick + chr2L 19856528 intron sick + chr2L 19856663 intron sick + chr2L_6_19855001 chr2L_19855001 RAL-136 285 chr2L 19871549 19871571 chr2L 19871636 19871658 6 85 3.5 5.0 4.2 1.2 109 chr2L 19871549 intron sick + chr2L 19871604 intron sick + chr2L 19871658 intron sick + chr2L_6_19870001 chr2L_19870001 RAL-136 286 chr2L 19943327 19943346 chr2L 19943430 19943450 5 108 2.5 3.0 2.8 1.3 123 chr2L 19943327 intron sick + chr2L 19943388 intron sick + chr2L 19943450 intron sick + chr2L_5_19940001 chr2L_19940001 RAL-136 287 chr2L 19972938 19972965 chr2L 19973019 19973038 10 82 3.0 5.0 4.0 2.0 100 chr2L 19972938 intron CG43861 - chr2L 19972988 intron CG43861 - chr2L 19973038 intron CG43861 - chr2L_10_19970001 chr2L_19970001 RAL-136 288 chr2L 19994643 19994659 chr2L 19994824 19994855 4 190 0.0 3.0 1.5 1.6 212 chr2L 19994643 intron CG43861 - chr2L 19994749 intron CG43861 - chr2L 19994855 intron CG43861 - chr2L_4_19990001 chr2L_19990001 RAL-136 289 chr2L 20036533 20036551 chr2L 20036617 20036620 4 78 3.5 0.0 1.8 1.4 87 chr2L 20036533 intron sNPF + chr2L 20036576 intron sNPF + chr2L 20036620 intron sNPF + chr2L_4_20035001 chr2L_20035001 RAL-136 290 chr2L 20041446 20041463 chr2L 20041515 20041547 10 82 1.0 3.5 2.2 3.1 101 chr2L 20041446 intron sNPF + chr2L 20041496 intron sNPF + chr2L 20041547 intron sNPF + chr2L_10_20040001 chr2L_20040001 RAL-136 291 chr2L 20046557 20046589 chr2L 20046643 20046655 13 76 2.5 2.5 2.5 3.7 98 chr2L 20046557 intron sNPF + chr2L 20046606 intron sNPF + chr2L 20046655 intron sNPF + chr2L_13_20045001 chr2L_20045001 RAL-136 292 chr2L 20085478 20085485 chr2L 20085564 20085577 4 90 3.5 4.5 4.0 0.8 99 chr2L 20085478 intron neb + chr2L 20085528 intron neb + chr2L 20085577 intron neb + chr2L_4_20085001 chr2L_20085001 RAL-136 293 chr2L 20127485 20127516 chr2L 20127712 20127743 5 226 1.0 0.5 0.8 2.8 258 chr2L 20127485 intergenic not near genes chr2L 20127614 intergenic not near genes chr2L 20127743 intergenic not near genes chr2L_5_20125001 chr2L_20125001 RAL-136 294 chr2L 20272122 20272139 chr2L 20282821 20282837 copia 7 10702 2.0 3.0 2.5 2.0 10715 chr2L 20272122 intergenic not near genes chr2L 20277480 intergenic not near genes chr2L 20282837 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-136 295 chr2L 20372236 20372253 chr2L 20372477 20372492 pogo 4 240 2.0 7.0 4.5 0.7 256 chr2L 20372236 intergenic Ugt37a1 - chr2L 20372364 intergenic Ugt37a1 - chr2L 20372492 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-136 296 chr2L 20376075 20376085 chr2L 20376194 20376204 4 119 6.0 5.5 5.8 0.6 129 chr2L 20376075 intergenic not near genes chr2L 20376140 intergenic not near genes chr2L 20376204 intergenic not near genes chr2L_4_20375001 chr2L_20375001 RAL-136 297 chr2L 20429679 20429698 chr2L 20429793 20429795 6 110 3.5 2.5 3.0 1.5 116 chr2L 20429679 intron CG31688 + chr2L 20429737 intron CG31688 + chr2L 20429795 intron CG31688 + chr2L_6_20425001 chr2L_20425001 RAL-136 298 chr2L 20552813 20552819 chr2L 20553035 20553056 4 231 2.5 3.0 2.8 1.1 243 chr2L 20552813 intergenic not near genes chr2L 20552934 intergenic not near genes chr2L 20553056 intergenic not near genes chr2L_4_20550001 chr2L_20550001 RAL-136 299 chr2L 20568663 20568682 chr2L 20569051 20569071 X-element 7 387 2.0 2.0 2.0 2.3 408 chr2L 20568663 intron CR45347 + chr2L 20568867 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-136 300 chr2L 20576229 20576247 chr2L 20583686 20583715 blood 11 7462 3.5 2.5 3.0 2.8 7486 chr2L 20576229 intergenic not near genes chr2L 20579972 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_11_20575001 chr2L_20575001 RAL-136 301 chr2L 20597086 20597120 chr2L 20597163 20597184 12 67 1.0 6.0 3.5 2.7 98 chr2L 20597086 intron CR44909 - chr2L 20597135 intron CR44909 - chr2L 20597184 intron CR44909 - chr2L_12_20595001 chr2L_20595001 RAL-136 302 chr2L 20611236 20611267 chr2L 20611323 20611336 10 82 0.0 2.5 1.2 4.5 100 chr2L 20611236 intron CR44909 - chr2L 20611286 intron CR44909 - chr2L 20611336 intron CR44909 - chr2L_10_20610001 chr2L_20610001 RAL-136 303 chr2L 20623843 20623859 chr2L 20623902 20623930 5 68 1.0 1.0 1.0 2.5 87 chr2L 20623843 intron CR44909 - chr2L 20623886 intron CR44909 - chr2L 20623930 intron CR44909 - chr2L_5_20620001 chr2L_20620001 RAL-136 304 chr2L 20695805 20695812 chr2L 20695882 20695894 4 81 3.5 1.0 2.2 1.2 89 chr2L 20695805 intron Hr38 - chr2L 20695850 intron Hr38 - chr2L 20695894 intron Hr38 - chr2L_4_20695001 chr2L_20695001 RAL-136 305 chr2L 20835820 20835836 chr2L 20836533 20836545 Quasimodo 4 712 1.0 0.0 0.5 2.7 725 chr2L 20835820 5` UTR Oseg5 - chr2L 20836182 intergenic Oseg5 -,Spn38F - chr2L 20836545 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-136 306 chr2L 20906823 20906854 chr2L 20907006 20907019 6 177 3.5 4.0 3.8 1.2 196 chr2L 20906823 intron,intron CG43739 -,sky - chr2L 20906921 intron,intron CG43739 -,sky - chr2L 20907019 intron,intron CG43739 -,sky - chr2L_6_20905001 chr2L_20905001 RAL-136 307 chr2L 20934608 20934622 chr2L 20934802 20934817 4 193 0.5 0.0 0.2 3.3 209 chr2L 20934608 intergenic CG9270 - chr2L 20934712 intergenic not near genes chr2L 20934817 intergenic not near genes chr2L_4_20930001 chr2L_20930001 RAL-136 308 chr2L 20976653 20976675 chr2L 20981454 20981488 X-element 8 4812 3.5 1.5 2.5 2.3 4835 chr2L 20976653 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981488 intron CG42238 - chr2L_8_20975001 chr2L_20975001 RAL-136 309 chr2L 20981746 20981772 chr2L 20981824 20981851 7 77 5.5 1.5 3.5 1.6 105 chr2L 20981746 intron CG42238 - chr2L 20981798 intron CG42238 - chr2L 20981851 intron CG42238 - chr2L_7_20980001 chr2L_20980001 RAL-136 310 chr2L 20984736 20984763 chr2L 20984828 20984855 8 90 4.0 1.5 2.8 2.1 119 chr2L 20984736 intron CG42238 - chr2L 20984796 intron CG42238 - chr2L 20984855 intron CG42238 - chr2L_8_20980001 chr2L_20980001 RAL-136 311 chr2L 20986912 20986936 chr2L 20987248 20987257 10 333 3.5 3.5 3.5 2.2 345 chr2L 20986912 intron CG42238 - chr2L 20987084 intron CG42238 - chr2L 20987257 intron CG42238 - chr2L_10_20985001 chr2L_20985001 RAL-136 312 chr2L 20991044 20991069 chr2L 20991122 20991147 5 75 1.5 1.5 1.5 2.0 103 chr2L 20991044 intron CG42238 - chr2L 20991096 intron CG42238 - chr2L 20991147 intron CG42238 - chr2L_5_20990001 chr2L_20990001 RAL-136 313 chr2L 21020276 21020308 chr2L 21023953 21023982 NOF 11 3674 1.5 1.5 1.5 4.4 3706 chr2L 21020276 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023982 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-136 314 chr2L 21041137 21041159 chr2L 21049395 21049416 Tirant 6 8258 2.5 1.5 2.0 2.0 8279 chr2L 21041137 intron CG42238 - chr2L 21045276 intron CG42238 - chr2L 21049416 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-136 315 chr2L 21124535 21124563 chr2L 21124621 21124645 6 85 2.0 0.5 1.2 2.7 110 chr2L 21124535 intron Nhe2 + chr2L 21124590 intron Nhe2 + chr2L 21124645 intron Nhe2 + chr2L_6_21120001 chr2L_21120001 RAL-136 316 chr2L 21233977 21233993 chr2L 21234059 21234086 5 88 0.5 2.5 1.5 2.0 109 chr2L 21233977 intron,5` UTR CG31626 -,CR45713 + chr2L 21234032 intron,5` UTR CG31626 -,CR45713 + chr2L 21234086 intron CG31626 - chr2L_5_21230001 chr2L_21230001 RAL-136 317 chr2L 21284560 21284582 chr2L 21286391 21286419 6 1833 14.0 17.5 15.8 0.4 1859 chr2L 21284560 intergenic not near genes chr2L 21285490 intergenic not near genes chr2L 21286419 exon Mio - chr2L_6_21285001 chr2L_21285001 RAL-136 318 chr2L 21286603 21286631 chr2L 21286681 21286709 4 78 1.5 0.5 1.0 2.0 106 chr2L 21286603 exon Mio - chr2L 21286656 intron Mio - chr2L 21286709 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-136 319 chr2L 21661151 21661162 chr2L 21666874 21666888 5 5719 23.5 15.0 19.2 0.2 5737 chr2L 21661151 exon Cul2 + chr2L 21664020 3` UTR CG2225 - chr2L 21666888 intron CG2225 - chr2L_5_21660001 chr2L_21660001 RAL-136 320 chr2L 21771231 21771252 chr2L 21771338 21771359 6 107 1.5 2.0 1.8 2.1 128 chr2L 21771231 intron CG31612 - chr2L 21771295 intron CG31612 - chr2L 21771359 intron CG31612 - chr2L_6_21770001 chr2L_21770001 RAL-136 321 chr2L 21825150 21825167 chr2L 21825583 21825601 4 433 2.5 1.5 2.0 1.3 451 chr2L 21825150 intergenic not near genes chr2L 21825376 intergenic not near genes chr2L 21825601 intergenic not near genes chr2L_4_21825001 chr2L_21825001 RAL-136 322 chr2L 21860661 21860696 chr2L 21860746 21860755 4 77 1.0 4.5 2.8 1.1 94 chr2L 21860661 intron CR44917 + chr2L 21860708 intron CR44917 + chr2L 21860755 intron CR44917 + chr2L_4_21860001 chr2L_21860001 RAL-136 323 chr2L 21886626 21886653 chr2L 21886705 21886732 7 74 1.5 3.0 2.2 2.2 106 chr2L 21886626 intergenic not near genes chr2L 21886679 intergenic not near genes chr2L 21886732 intergenic not near genes chr2L_7_21885001 chr2L_21885001 RAL-136 324 chr2L 21921829 21921853 chr2L 21921905 21921920 12 71 4.5 3.5 4.0 2.4 91 chr2L 21921829 intergenic not near genes chr2L 21921874 intergenic not near genes chr2L 21921920 intergenic not near genes chr2L_12_21920001 chr2L_21920001 RAL-136 325 chr2L 21981688 21981712 chr2L 21990848 21990876 roo 10 9163 1.5 4.5 3.0 2.5 9188 chr2L 21981688 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-136 326 chr2L 258358 258367 chr2L 22104393 22104413 4 21846036 28.5 9.5 19.0 0.2 21846055 chr2L 258358 intron CG3645 - chr2L 11181386 intron Ca-beta - chr2L 22104413 intergenic CG31703 -,CG15219 - chr2L_4_11180001 chr2L_11180001 RAL-136 327 chr2R 469972 469984 chr2R 473198 473225 F-element 4 3235 0.5 1.0 0.8 2.2 3253 chr2R 469972 intergenic not near genes chr2R 471598 intergenic not near genes chr2R 473225 intergenic not near genes chr2R_4_470001 chr2R_470001 RAL-136 328 chr2R 552757 552777 chr2R 553970 553995 1360 4 1212 2.5 1.5 2.0 1.3 1238 chr2R 552757 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 553995 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-136 329 chr2R 1082365 1082378 chr2R 1087126 1087154 Doc 5 4765 6.0 3.5 4.8 0.9 4789 chr2R 1082365 intron rl + chr2R 1084760 intron rl + chr2R 1087154 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-136 330 chr2R 4186938 4186948 chr2R 4187284 4187296 4 347 1.5 1.0 1.2 1.8 358 chr2R 4186938 3` UTR CG40127 - chr2R 4187117 3` UTR CG40127 - chr2R 4187296 3` UTR CG40127 - chr2R_4_4185001 chr2R_4185001 RAL-136 331 chr2R 4604553 4604579 chr2R 4604632 4604657 5 77 1.0 1.5 1.2 2.3 104 chr2R 4604553 intron p120ctn + chr2R 4604605 intron p120ctn + chr2R 4604657 intron p120ctn + chr2R_5_4600001 chr2R_4600001 RAL-136 332 chr2R 4622968 4622988 chr2R 4624111 4624136 1360 10 1153 1.5 6.5 4.0 2.0 1168 chr2R 4622968 intergenic CR44101 - chr2R 4623552 intergenic not near genes chr2R 4624136 intergenic not near genes chr2R_10_4620001 chr2R_4620001 RAL-136 333 chr2R 4624649 4624671 chr2R 4626552 4626576 Bica 8 1902 2.0 4.5 3.2 1.9 1927 chr2R 4624649 intergenic not near genes chr2R 4625612 intergenic not near genes chr2R 4626576 intergenic not near genes chr2R_8_4625001 chr2R_4625001 RAL-136 334 chr2R 4750360 4750377 chr2R 4751501 4751530 1360 6 1151 0.5 2.0 1.2 2.7 1170 chr2R 4750360 intron conu + chr2R 4750945 intron conu + chr2R 4751530 intron conu + chr2R_6_4750001 chr2R_4750001 RAL-136 335 chr2R 5008992 5009018 chr2R 5009301 5009308 6 302 5.5 2.0 3.8 1.2 316 chr2R 5008992 intron Ir41a + chr2R 5009150 intron Ir41a + chr2R 5009308 intron Ir41a + chr2R_6_5005001 chr2R_5005001 RAL-136 336 chr2R 5038525 5038532 chr2R 5039322 5039327 4 796 3.5 5.0 4.2 0.8 802 chr2R 5038525 intergenic not near genes chr2R 5038926 intergenic not near genes chr2R 5039327 intergenic not near genes chr2R_4_5035001 chr2R_5035001 RAL-136 337 chr2R 5080793 5080815 chr2R 5080880 5080904 8 88 1.5 2.0 1.8 2.9 111 chr2R 5080793 intergenic not near genes chr2R 5080848 intergenic not near genes chr2R 5080904 intergenic not near genes chr2R_8_5080001 chr2R_5080001 RAL-136 338 chr2R 5237355 5237370 chr2R 5237436 5237442 5 80 1.0 0.0 0.5 3.3 87 chr2R 5237355 intron Nipped-A - chr2R 5237398 intron Nipped-A - chr2R 5237442 intron Nipped-A - chr2R_5_5235001 chr2R_5235001 RAL-136 339 chr2R 5255458 5255479 chr2R 5256734 5256765 14 1280 25.5 48.0 36.8 0.4 1307 chr2R 5255458 intergenic CR41443 + chr2R 5256112 intergenic not near genes chr2R 5256765 intergenic not near genes chr2R_14_5255001 chr2R_5255001 RAL-136 340 chr2R 5418014 5418024 chr2R 5420641 5420656 Burdock 4 2631 0.5 2.0 1.2 1.8 2642 chr2R 5418014 intron laccase2 + chr2R 5419335 intron laccase2 + chr2R 5420656 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-136 341 chr2R 5472385 5472393 chr2R 5472459 5472488 5 83 2.0 3.5 2.8 1.3 103 chr2R 5472385 intron CG30440 - chr2R 5472436 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-136 342 chr2R 5491663 5491698 chr2R 5491755 5491791 16 90 5.0 1.5 3.2 3.8 128 chr2R 5491663 intron CG30440 - chr2R 5491727 intron CG30440 - chr2R 5491791 intron CG30440 - chr2R_16_5490001 chr2R_5490001 RAL-136 343 chr2R 5581404 5581425 chr2R 5627605 5627633 9 46206 6.5 4.0 5.2 1.5 46229 chr2R 5581404 intergenic not near genes chr2R 5604518 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_9_5600001 chr2R_5600001 RAL-136 344 chr2R 5728046 5728064 chr2R 5728133 5728137 7 85 1.5 1.0 1.2 3.2 91 chr2R 5728046 intergenic not near genes chr2R 5728092 intergenic not near genes chr2R 5728137 intergenic not near genes chr2R_7_5725001 chr2R_5725001 RAL-136 345 chr2R 5861305 5861320 chr2R 5861409 5861438 7 113 2.0 6.0 4.0 1.4 133 chr2R 5861305 intergenic dpr12 + chr2R 5861372 intergenic not near genes chr2R 5861438 intergenic not near genes chr2R_7_5860001 chr2R_5860001 RAL-136 346 chr2R 5869281 5869307 chr2R 5874351 5874383 flea 8 5074 3.5 4.0 3.8 1.7 5102 chr2R 5869281 intergenic not near genes chr2R 5871832 intergenic not near genes chr2R 5874383 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-136 347 chr2R 5878928 5878958 chr2R 5879003 5879023 8 74 0.5 2.0 1.2 3.6 95 chr2R 5878928 intergenic CG44438 - chr2R 5878976 intergenic CG44438 - chr2R 5879023 intergenic CG44438 - chr2R_8_5875001 chr2R_5875001 RAL-136 348 chr2R 6080662 6080697 chr2R 6080747 6080751 15 76 3.5 1.5 2.5 4.3 89 chr2R 6080662 intergenic CG14590 -,Ars2 - chr2R 6080706 intergenic Ars2 -,CG14590 - chr2R 6080751 intergenic Ars2 -,CG14590 - chr2R_15_6080001 chr2R_6080001 RAL-136 349 chr2R 6096733 6096750 chr2R 6101910 6101933 BS 5 5177 6.5 4.5 5.5 0.8 5200 chr2R 6096733 intron EcR - chr2R 6099333 intron EcR - chr2R 6101933 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-136 350 chr2R 6105586 6105604 chr2R 6105675 6105694 7 87 1.0 7.5 4.2 1.3 108 chr2R 6105586 intron EcR - chr2R 6105640 intron EcR - chr2R 6105694 intron EcR - chr2R_7_6105001 chr2R_6105001 RAL-136 351 chr2R 6170182 6170206 chr2R 6170263 6170287 4 81 0.0 1.5 0.8 2.2 105 chr2R 6170182 intergenic not near genes chr2R 6170234 intergenic not near genes chr2R 6170287 intergenic not near genes chr2R_4_6170001 chr2R_6170001 RAL-136 352 chr2R 6194463 6194695 chr2R 6194569 6194778 11 99 7.0 1.5 4.2 2.1 315 chr2R 6194463 intron Ptr - chr2R 6194620 intron Ptr - chr2R 6194778 intron Ptr - chr2R_11_6190001 chr2R_6190001 RAL-136 353 chr2R 6529822 6529852 chr2R 6529920 6529938 8 94 0.0 3.5 1.8 2.9 116 chr2R 6529822 intron jing + chr2R 6529880 intron jing + chr2R 6529938 intron jing + chr2R_8_6525001 chr2R_6525001 RAL-136 354 chr2R 6579787 6579802 chr2R 6584871 6584880 flea 4 5082 0.5 3.5 2.0 1.3 5093 chr2R 6579787 intron jing + chr2R 6582334 intron jing + chr2R 6584880 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-136 355 chr2R 6594053 6594057 chr2R 6594181 6594193 4 134 0.0 4.0 2.0 1.3 140 chr2R 6594053 intron jing + chr2R 6594123 intron jing + chr2R 6594193 intron jing + chr2R_4_6590001 chr2R_6590001 RAL-136 356 chr2R 6597880 6597903 chr2R 6597959 6597986 8 84 3.5 2.5 3.0 2.0 106 chr2R 6597880 intron jing + chr2R 6597933 intron jing + chr2R 6597986 intron jing + chr2R_8_6595001 chr2R_6595001 RAL-136 357 chr2R 6607933 6607947 chr2R 6608032 6608049 6 102 2.5 1.5 2.0 2.0 116 chr2R 6607933 intron jing + chr2R 6607991 intron jing + chr2R 6608049 intron jing + chr2R_6_6605001 chr2R_6605001 RAL-136 358 chr2R 7101630 7101649 chr2R 7101708 7101719 8 83 1.0 3.5 2.2 2.5 89 chr2R 7101630 intron esn + chr2R 7101674 intron esn + chr2R 7101719 intron esn + chr2R_8_7100001 chr2R_7100001 RAL-136 359 chr2R 7175508 7175531 chr2R 7175579 7175603 10 74 3.0 4.0 3.5 2.2 95 chr2R 7175508 intron pk + chr2R 7175556 intron pk + chr2R 7175603 intron pk + chr2R_10_7175001 chr2R_7175001 RAL-136 360 chr2R 7196569 7196591 chr2R 7201344 7201356 F-element 5 4771 2.0 1.0 1.5 2.0 4787 chr2R 7196569 intron pk + chr2R 7198962 intron pk + chr2R 7201356 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-136 361 chr2R 7417906 7418162 chr2R 7417992 7418226 4 77 3.5 2.0 2.8 1.1 320 chr2R 7417906 intergenic not near genes chr2R 7418066 intergenic not near genes chr2R 7418226 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-136 362 chr2R 7608416 7608440 chr2R 7613619 7613626 I-element 4 5198 1.0 3.5 2.2 1.2 5210 chr2R 7608416 intron CG1358 - chr2R 7611021 intron CG1358 - chr2R 7613626 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-136 363 chr2R 7774951 7774963 chr2R 7775240 7775266 6 300 2.0 3.0 2.5 1.7 315 chr2R 7774951 intron,intron CG30497 -,CG45093 - chr2R 7775108 intron,intron CG30497 -,CG45093 - chr2R 7775266 intron,intron CG30497 -,CG45093 - chr2R_6_7775001 chr2R_7775001 RAL-136 364 chr2R 7815687 7815697 chr2R 7822140 7822166 Burdock 4 6459 1.5 2.5 2.0 1.3 6479 chr2R 7815687 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822166 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-136 365 chr2R 7869192 7869217 chr2R 7873978 7874003 Doc 5 4786 3.5 2.5 3.0 1.2 4811 chr2R 7869192 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874003 intron Dgk - chr2R_5_7870001 chr2R_7870001 RAL-136 366 chr2R 7916424 7916454 chr2R 7916509 7916534 5 78 1.5 5.5 3.5 1.1 110 chr2R 7916424 5` UTR CG12159 - chr2R 7916479 intergenic CG12159 -,Cul1 + chr2R 7916534 intergenic CG12159 -,Cul1 + chr2R_5_7915001 chr2R_7915001 RAL-136 367 chr2R 7942930 7942958 chr2R 7943186 7943214 7 254 1.0 0.0 0.5 4.7 284 chr2R 7942930 intron CG14764 - chr2R 7943072 intron CG14764 - chr2R 7943214 intron CG14764 - chr2R_7_7940001 chr2R_7940001 RAL-136 368 chr2R 8067079 8067094 chr2R 8067149 8067176 6 79 2.0 2.5 2.2 1.9 97 chr2R 8067079 intron CG17977 - chr2R 8067128 exon CG17977 - chr2R 8067176 exon CG17977 - chr2R_6_8065001 chr2R_8065001 RAL-136 369 chr2R 8089256 8089288 chr2R 8089342 8089374 6 86 1.5 1.5 1.5 2.4 118 chr2R 8089256 3` UTR sut2 + chr2R 8089315 intergenic sut2 +,sut3 + chr2R 8089374 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-136 370 chr2R 8259579 8259598 chr2R 8259657 8259678 7 77 1.5 3.5 2.5 2.0 99 chr2R 8259579 exon CG30369 + chr2R 8259628 exon CG30369 + chr2R 8259678 3` UTR CG30369 + chr2R_7_8255001 chr2R_8255001 RAL-136 371 chr2R 8330860 8330892 chr2R 8331346 8331378 roo 4 486 2.5 2.0 2.2 1.2 518 chr2R 8330860 intron pdm3 + chr2R 8331119 intron pdm3 + chr2R 8331378 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-136 372 chr2R 8379794 8379814 chr2R 8379890 8379909 5 95 3.0 3.5 3.2 1.2 115 chr2R 8379794 intron pdm3 + chr2R 8379852 intron pdm3 + chr2R 8379909 intron pdm3 + chr2R_5_8375001 chr2R_8375001 RAL-136 373 chr2R 8714708 8714722 chr2R 8714783 8714808 5 83 0.0 4.0 2.0 1.7 100 chr2R 8714708 3` UTR PGRP-SC1b + chr2R 8714758 3` UTR PGRP-SC1b + chr2R 8714808 3` UTR PGRP-SC1b + chr2R_5_8710001 chr2R_8710001 RAL-136 374 chr2R 8722764 8722789 chr2R 8723005 8723010 pogo 11 235 4.0 3.5 3.8 2.3 246 chr2R 8722764 intron CG14767 - chr2R 8722887 intron CG14767 - chr2R 8723010 intron CG14767 - chr2R_11_8720001 chr2R_8720001 RAL-136 375 chr2R 8777918 8777946 chr2R 8784102 8784117 diver 5 6184 0.5 2.5 1.5 2.0 6199 chr2R 8777918 intergenic not near genes chr2R 8781018 intergenic not near genes chr2R 8784117 intergenic not near genes chr2R_5_8780001 chr2R_8780001 RAL-136 376 chr2R 9047422 9047431 chr2R 9047517 9047526 4 95 0.0 1.0 0.5 2.7 104 chr2R 9047422 intron CG13743 - chr2R 9047474 intron CG13743 - chr2R 9047526 intron CG13743 - chr2R_4_9045001 chr2R_9045001 RAL-136 377 chr2R 9052709 9052738 chr2R 9052790 9052816 10 79 0.0 6.5 3.2 2.4 107 chr2R 9052709 intron CG13743 - chr2R 9052762 intron CG13743 - chr2R 9052816 intron CG13743 - chr2R_10_9050001 chr2R_9050001 RAL-136 378 chr2R 9212704 9212724 chr2R 9213178 9213205 roo 9 479 2.0 4.5 3.2 2.1 501 chr2R 9212704 intergenic CR45309 + chr2R 9212954 intergenic CR45309 + chr2R 9213205 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-136 379 chr2R 9213627 9213646 chr2R 9213705 9213727 4 81 0.0 0.5 0.2 3.3 100 chr2R 9213627 5` UTR CR45309 + chr2R 9213677 5` UTR CR45309 + chr2R 9213727 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-136 380 chr2R 9227871 9227898 chr2R 9227955 9227984 5 85 3.0 0.0 1.5 2.0 113 chr2R 9227871 3` UTR hig - chr2R 9227928 3` UTR hig - chr2R 9227984 3` UTR hig - chr2R_5_9225001 chr2R_9225001 RAL-136 381 chr2R 9248033 9248054 chr2R 9248286 9248306 5 251 0.0 2.0 1.0 2.5 273 chr2R 9248033 intergenic not near genes chr2R 9248170 intergenic not near genes chr2R 9248306 intergenic not near genes chr2R_5_9245001 chr2R_9245001 RAL-136 382 chr2R 9368130 9368155 chr2R 9368206 9368231 7 74 3.0 0.0 1.5 2.8 101 chr2R 9368130 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368231 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-136 383 chr2R 9389161 9389177 chr2R 9389243 9389259 4 80 3.0 2.0 2.5 1.1 98 chr2R 9389161 5` UTR CG13954 - chr2R 9389210 5` UTR CG13954 - chr2R 9389259 5` UTR CG13954 - chr2R_4_9385001 chr2R_9385001 RAL-136 384 chr2R 9408085 9408119 chr2R 9408171 9408189 15 81 0.5 0.5 0.5 10.0 104 chr2R 9408085 intron wun - chr2R 9408137 intron wun - chr2R 9408189 intron wun - chr2R_15_9405001 chr2R_9405001 RAL-136 385 chr2R 9510678 9510697 chr2R 9510787 9510813 7 114 2.0 3.0 2.5 2.0 135 chr2R 9510678 intron brp + chr2R 9510746 intron brp + chr2R 9510813 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-136 386 chr2R 9561832 9561848 chr2R 9561917 9561935 7 86 0.0 2.5 1.2 3.2 103 chr2R 9561832 3` UTR,intron CR45281 -,CG1809 + chr2R 9561884 3` UTR,intron CR45281 -,CG1809 + chr2R 9561935 3` UTR,intron CR45281 -,CG1809 + chr2R_7_9560001 chr2R_9560001 RAL-136 387 chr2R 9669145 9669170 chr2R 9669236 9669271 11 98 5.0 2.5 3.8 2.3 126 chr2R 9669145 intron Mmp2 - chr2R 9669208 intron Mmp2 - chr2R 9669271 intron Mmp2 - chr2R_11_9665001 chr2R_9665001 RAL-136 388 chr2R 9699419 9699441 chr2R 9699494 9699527 4 76 3.0 3.5 3.2 1.0 108 chr2R 9699419 intergenic not near genes chr2R 9699473 intergenic not near genes chr2R 9699527 intergenic not near genes chr2R_4_9695001 chr2R_9695001 RAL-136 389 chr2R 9726619 9726642 chr2R 9734170 9734191 17.6 5 7549 3.0 1.0 2.0 1.7 7572 chr2R 9726619 intron sqa - chr2R 9730405 intron sqa - chr2R 9734191 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-136 390 chr2R 9765153 9765168 chr2R 9765228 9765230 5 73 3.0 4.5 3.8 1.0 77 chr2R 9765153 exon trpl + chr2R 9765192 exon trpl + chr2R 9765230 exon trpl + chr2R_5_9765001 chr2R_9765001 RAL-136 391 chr2R 9790086 9790112 chr2R 9790163 9790176 14 73 1.0 7.5 4.2 2.7 90 chr2R 9790086 intron,5` UTR CG1688 -,CR44208 + chr2R 9790131 intron,5` UTR CG1688 -,CR44208 + chr2R 9790176 intron,5` UTR CG1688 -,CR44208 + chr2R_14_9790001 chr2R_9790001 RAL-136 392 chr2R 9945439 9945468 chr2R 9945635 9945664 BS 9 193 5.0 3.5 4.2 1.7 225 chr2R 9945439 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_9_9945001 chr2R_9945001 RAL-136 393 chr2R 10005563 10005582 chr2R 10005659 10005671 5 95 1.5 0.5 1.0 2.5 108 chr2R 10005563 intron Pka-R2 - chr2R 10005617 intron Pka-R2 - chr2R 10005671 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-136 394 chr2R 10005847 10005881 chr2R 10007012 10007030 1360 9 1162 5.0 5.0 5.0 1.5 1183 chr2R 10005847 intron Pka-R2 - chr2R 10006438 intron Pka-R2 - chr2R 10007030 intron Pka-R2 - chr2R_9_10005001 chr2R_10005001 RAL-136 395 chr2R 10171110 10171126 chr2R 10171194 10171210 5 82 1.5 4.0 2.8 1.3 100 chr2R 10171110 intron KCNQ - chr2R 10171160 intron KCNQ - chr2R 10171210 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-136 396 chr2R 10172637 10172663 chr2R 10172749 10172775 10 110 2.5 0.0 1.2 4.5 138 chr2R 10172637 intron KCNQ - chr2R 10172706 intron KCNQ - chr2R 10172775 intron KCNQ - chr2R_10_10170001 chr2R_10170001 RAL-136 397 chr2R 10190442 10190474 chr2R 10190524 10190524 11 72 1.0 4.5 2.8 2.9 82 chr2R 10190442 intron KCNQ - chr2R 10190483 intron KCNQ - chr2R 10190524 intron KCNQ - chr2R_11_10190001 chr2R_10190001 RAL-136 398 chr2R 10216192 10216204 chr2R 10216270 10216282 5 77 4.0 2.0 3.0 1.2 90 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216237 intron,intron CG12912 -,Hr46 - chr2R 10216282 intron,intron CG12912 -,Hr46 - chr2R_5_10215001 chr2R_10215001 RAL-136 399 chr2R 10313324 10313334 chr2R 10313412 10313422 4 88 1.5 0.0 0.8 2.2 98 chr2R 10313324 intergenic not near genes chr2R 10313373 intergenic not near genes chr2R 10313422 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-136 400 chr2R 10352673 10352703 chr2R 10352750 10352779 7 75 1.5 3.0 2.2 2.2 106 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352779 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_7_10350001 chr2R_10350001 RAL-136 401 chr2R 10372863 10372876 chr2R 10373193 10373206 4 330 3.0 4.0 3.5 0.9 343 chr2R 10372863 intron CG42732 - chr2R 10373034 intron CG42732 - chr2R 10373206 intron CG42732 - chr2R_4_10370001 chr2R_10370001 RAL-136 402 chr2R 10411829 10411832 chr2R 10411899 10411914 4 79 0.0 2.0 1.0 2.0 85 chr2R 10411829 intron CG42732 - chr2R 10411872 intron CG42732 - chr2R 10411914 intron CG42732 - chr2R_4_10410001 chr2R_10410001 RAL-136 403 chr2R 10469021 10469046 chr2R 10469147 10469168 11 124 4.5 7.0 5.8 1.6 147 chr2R 10469021 intron CG11777 + chr2R 10469094 intron CG11777 + chr2R 10469168 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-136 404 chr2R 10574626 10574636 chr2R 10574708 10574709 4 79 3.5 1.5 2.5 1.1 83 chr2R 10574626 intron psq + chr2R 10574668 intron psq + chr2R 10574709 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-136 405 chr2R 10585574 10585589 chr2R 10594142 10594167 Tirant 6 8579 4.0 0.5 2.2 1.9 8593 chr2R 10585574 intron psq + chr2R 10589870 intron psq + chr2R 10594167 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-136 406 chr2R 10687735 10687752 chr2R 10687966 10687986 4 230 0.0 2.5 1.2 1.8 251 chr2R 10687735 intron stan + chr2R 10687860 intron stan + chr2R 10687986 intron stan + chr2R_4_10685001 chr2R_10685001 RAL-136 407 chr2R 10771013 10771021 chr2R 10771084 10771102 5 77 2.0 2.0 2.0 1.7 89 chr2R 10771013 intron CG33144 - chr2R 10771058 intron CG33144 - chr2R 10771102 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-136 408 chr2R 10892624 10892654 chr2R 10892702 10892732 7 76 2.5 0.5 1.5 2.8 108 chr2R 10892624 3` UTR CG30020 + chr2R 10892678 3` UTR CG30020 + chr2R 10892732 3` UTR CG30020 + chr2R_7_10890001 chr2R_10890001 RAL-136 409 chr2R 10948024 10948060 chr2R 10955575 10955607 17.6 7 7547 1.0 1.5 1.2 3.2 7583 chr2R 10948024 intergenic not near genes chr2R 10951816 intergenic not near genes chr2R 10955607 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-136 410 chr2R 10979656 10979683 chr2R 10980126 10980135 297 5 463 2.5 0.5 1.5 2.0 479 chr2R 10979656 intergenic not near genes chr2R 10979896 intergenic not near genes chr2R 10980135 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-136 411 chr2R 11009814 11009844 chr2R 11018986 11019004 roo 7 9170 1.5 0.5 1.0 3.5 9190 chr2R 11009814 intron luna - chr2R 11014409 intron luna - chr2R 11019004 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-136 412 chr2R 11019890 11019911 chr2R 11024945 11024956 jockey 7 5058 0.5 5.5 3.0 1.8 5066 chr2R 11019890 intron luna - chr2R 11022423 intron luna - chr2R 11024956 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-136 413 chr2R 11091676 11091700 chr2R 11091839 11091867 5 164 1.5 2.0 1.8 1.8 191 chr2R 11091676 intron luna - chr2R 11091772 intron luna - chr2R 11091867 intron luna - chr2R_5_11090001 chr2R_11090001 RAL-136 414 chr2R 11102871 11102879 chr2R 11102953 11102958 5 81 7.5 0.0 3.8 1.0 87 chr2R 11102871 intron luna - chr2R 11102914 intron luna - chr2R 11102958 intron luna - chr2R_5_11100001 chr2R_11100001 RAL-136 415 chr2R 11102893 11102895 chr2R 11102947 11102966 4 70 4.0 0.0 2.0 1.3 73 chr2R 11102893 intron luna - chr2R 11102930 intron luna - chr2R 11102966 intron luna - chr2R_4_11100001 chr2R_11100001 RAL-136 416 chr2R 11144292 11144314 chr2R 11144384 11144415 6 99 3.0 0.0 1.5 2.4 123 chr2R 11144292 intron CG13229 - chr2R 11144354 intron CG13229 - chr2R 11144415 intron CG13229 - chr2R_6_11140001 chr2R_11140001 RAL-136 417 chr2R 11150190 11150195 chr2R 11150266 11150269 4 76 4.5 5.0 4.8 0.7 79 chr2R 11150190 intron CG13229 - chr2R 11150230 intron CG13229 - chr2R 11150269 intron CG13229 - chr2R_4_11150001 chr2R_11150001 RAL-136 418 chr2R 11207821 11207833 chr2R 11208014 11208026 BS 8 192 4.0 1.5 2.8 2.1 205 chr2R 11207821 intron shn + chr2R 11207924 intron shn + chr2R 11208026 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-136 419 chr2R 11207837 11207848 chr2R 11208013 11208037 BS 5 188 2.5 1.5 2.0 1.7 200 chr2R 11207837 intron shn + chr2R 11207937 intron shn + chr2R 11208037 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-136 420 chr2R 11249175 11249190 chr2R 11249300 11249307 4 124 4.0 0.0 2.0 1.3 132 chr2R 11249175 intergenic CG43112 + chr2R 11249241 intergenic CG43112 + chr2R 11249307 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-136 421 chr2R 11260524 11260551 chr2R 11260625 11260657 7 105 0.5 3.5 2.0 2.3 133 chr2R 11260524 intergenic not near genes chr2R 11260590 intergenic Cpr47Ed - chr2R 11260657 intergenic Cpr47Ed - chr2R_7_11260001 chr2R_11260001 RAL-136 422 chr2R 11336581 11336606 chr2R 11336663 11336689 7 82 2.5 3.5 3.0 1.8 108 chr2R 11336581 intergenic sha +,lambdaTry + chr2R 11336635 intergenic sha +,lambdaTry + chr2R 11336689 intergenic lambdaTry +,sha + chr2R_7_11335001 chr2R_11335001 RAL-136 423 chr2R 11439214 11439222 chr2R 11439264 11439288 4 61 1.5 3.5 2.5 1.1 74 chr2R 11439214 intron CG7777 + chr2R 11439251 intron CG7777 + chr2R 11439288 intron CG7777 + chr2R_4_11435001 chr2R_11435001 RAL-136 424 chr2R 11449428 11449460 chr2R 11449505 11449536 6 76 3.0 5.0 4.0 1.2 108 chr2R 11449428 3` UTR qvr + chr2R 11449482 3` UTR qvr + chr2R 11449536 3` UTR qvr + chr2R_6_11445001 chr2R_11445001 RAL-136 425 chr2R 11472647 11472677 chr2R 11473844 11473859 pogo 10 1194 5.5 3.5 4.5 1.8 1212 chr2R 11472647 intergenic not near genes chr2R 11473253 intergenic not near genes chr2R 11473859 intergenic not near genes chr2R_10_11470001 chr2R_11470001 RAL-136 426 chr2R 11677875 11677885 chr2R 11677952 11677956 4 75 2.5 2.5 2.5 1.1 81 chr2R 11677875 intron,exon Roc2 -,Tret1-2 + chr2R 11677916 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677956 intron,3` UTR Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-136 427 chr2R 11683455 11683466 chr2R 11683521 11683550 7 72 4.0 2.0 3.0 1.8 95 chr2R 11683455 intron Buffy + chr2R 11683502 intron Buffy + chr2R 11683550 intron Buffy + chr2R_7_11680001 chr2R_11680001 RAL-136 428 chr2R 11777716 11777736 chr2R 11779117 11779145 11 1405 14.5 22.0 18.2 0.6 1429 chr2R 11777716 intron ths + chr2R 11778430 intron ths + chr2R 11779145 intron,exon ths +,CG42493 + chr2R_11_11775001 chr2R_11775001 RAL-136 429 chr2R 11996236 11996262 chr2R 11996312 11996338 5 74 0.0 2.5 1.2 2.3 102 chr2R 11996236 intergenic CR45318 +,CR45319 - chr2R 11996287 intergenic CR45318 +,CR45319 - chr2R 11996338 intergenic CR45318 +,CR45319 - chr2R_5_11995001 chr2R_11995001 RAL-136 430 chr2R 12016808 12016842 chr2R 12016891 12016924 6 80 4.5 1.5 3.0 1.5 116 chr2R 12016808 intron otk - chr2R 12016866 intron otk - chr2R 12016924 intron otk - chr2R_6_12015001 chr2R_12015001 RAL-136 431 chr2R 8518782 8518787 chr2R 12066180 12066200 6 3547399 5.0 6.5 5.8 0.9 3547418 chr2R 8518782 intron mtt - chr2R 10292491 intron CAP + chr2R 12066200 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-136 432 chr2R 12120424 12120437 chr2R 12120486 12120504 4 64 1.0 4.0 2.5 1.1 80 chr2R 12120424 intergenic not near genes chr2R 12120464 intergenic not near genes chr2R 12120504 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-136 433 chr2R 12187472 12187481 chr2R 12190088 12190099 6 2619 61.5 60.0 60.8 0.1 2627 chr2R 12187472 exon Cyp6g1 + chr2R 12188786 exon Cyp6g2 - chr2R 12190099 exon Cyp6g2 - chr2R_6_12185001 chr2R_12185001 RAL-136 434 chr2R 12187471 12187508 chr2R 12190102 12190124 21 2626 91.0 53.0 72.0 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_21_12185001 chr2R_12185001 RAL-136 435 chr2R 12363393 12363415 chr2R 12363811 12363845 19 427 2.0 3.0 2.5 5.4 452 chr2R 12363393 intergenic CG30043 + chr2R 12363619 intergenic CG30043 + chr2R 12363845 intergenic not near genes chr2R_19_12360001 chr2R_12360001 RAL-136 436 chr2R 12492103 12492122 chr2R 12492187 12492216 4 85 6.0 0.0 3.0 1.0 113 chr2R 12492103 intron fdl - chr2R 12492160 intron fdl - chr2R 12492216 intron fdl - chr2R_4_12490001 chr2R_12490001 RAL-136 437 chr2R 12501697 12501722 chr2R 12503849 12503873 Rt1c 7 2158 1.5 3.5 2.5 2.0 2176 chr2R 12501697 intron fdl - chr2R 12502785 intron fdl - chr2R 12503873 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-136 438 chr2R 12504164 12504178 chr2R 12504224 12504244 8 67 4.5 8.0 6.2 1.1 80 chr2R 12504164 intron fdl - chr2R 12504204 intron fdl - chr2R 12504244 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-136 439 chr2R 12789294 12789316 chr2R 12797657 12797667 roo 6 8356 3.0 3.5 3.2 1.4 8373 chr2R 12789294 intron,3` UTR sca +,CR45137 - chr2R 12793480 intron,intron sca +,CR45137 - chr2R 12797667 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-136 440 chr2R 13061353 13061378 chr2R 13061434 13061459 5 81 2.0 3.0 2.5 1.4 106 chr2R 13061353 intron Drl-2 - chr2R 13061406 intron Drl-2 - chr2R 13061459 intron Drl-2 - chr2R_5_13060001 chr2R_13060001 RAL-136 441 chr2R 13123177 13123187 chr2R 13123512 13123529 4 340 3.5 1.5 2.5 1.1 352 chr2R 13123177 exon CG13325 + chr2R 13123353 exon CG13325 + chr2R 13123529 exon CG13325 + chr2R_4_13120001 chr2R_13120001 RAL-136 442 chr2R 13136840 13136864 chr2R 13141638 13141650 Doc 11 4795 5.0 3.5 4.2 2.1 4810 chr2R 13136840 exon Cap-G + chr2R 13139245 intron Cap-G + chr2R 13141650 intron Cap-G + chr2R_11_13135001 chr2R_13135001 RAL-136 443 chr2R 13167440 13167460 chr2R 13167524 13167554 4 88 3.5 0.0 1.8 1.4 114 chr2R 13167440 intron GLaz - chr2R 13167497 intron GLaz - chr2R 13167554 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-136 444 chr2R 13220542 13220559 chr2R 13220620 13220635 6 78 0.0 3.0 1.5 2.4 93 chr2R 13220542 intron CG17059 + chr2R 13220588 intron CG17059 + chr2R 13220635 intron CG17059 + chr2R_6_13220001 chr2R_13220001 RAL-136 445 chr2R 13309660 13309683 chr2R 13309778 13309801 6 114 2.5 0.5 1.5 2.4 141 chr2R 13309660 intergenic not near genes chr2R 13309730 intergenic not near genes chr2R 13309801 intergenic not near genes chr2R_6_13305001 chr2R_13305001 RAL-136 446 chr2R 13439111 13439140 chr2R 13439225 13439278 6 122 3.5 0.0 1.8 2.1 167 chr2R 13439111 intergenic CG42321 -,cnn - chr2R 13439194 intergenic cnn -,CG42321 - chr2R 13439278 intergenic cnn -,CG42321 - chr2R_6_13435001 chr2R_13435001 RAL-136 447 chr2R 13580500 13580525 chr2R 13580846 13580853 jockey 7 342 0.5 1.5 1.0 3.5 353 chr2R 13580500 3` UTR CG6191 - chr2R 13580676 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580853 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-136 448 chr2R 14142447 14142473 chr2R 14142533 14142549 5 81 1.0 1.5 1.2 2.3 102 chr2R 14142447 intergenic not near genes chr2R 14142498 intergenic not near genes chr2R 14142549 intergenic not near genes chr2R_5_14140001 chr2R_14140001 RAL-136 449 chr2R 14266762 14266791 chr2R 14266836 14266854 9 70 1.5 2.5 2.0 3.0 92 chr2R 14266762 intron CG8547 - chr2R 14266808 intron CG8547 - chr2R 14266854 intron CG8547 - chr2R_9_14265001 chr2R_14265001 RAL-136 450 chr2R 14277373 14277375 chr2R 14277437 14277452 4 69 0.0 8.0 4.0 0.8 79 chr2R 14277373 5` UTR Ih + chr2R 14277412 5` UTR Ih + chr2R 14277452 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-136 451 chr2R 14342230 14342244 chr2R 14342297 14342320 6 70 3.5 5.0 4.2 1.2 90 chr2R 14342230 intron Shroom + chr2R 14342275 intron Shroom + chr2R 14342320 intron Shroom + chr2R_6_14340001 chr2R_14340001 RAL-136 452 chr2R 14393869 14393897 chr2R 14393949 14393966 9 80 5.5 2.5 4.0 1.8 97 chr2R 14393869 intergenic not near genes chr2R 14393918 intergenic not near genes chr2R 14393966 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-136 453 chr2R 14467324 14467327 chr2R 14476469 14476482 roo 5 9153 3.0 5.0 4.0 1.0 9158 chr2R 14467324 intergenic not near genes chr2R 14471903 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-136 454 chr2R 14497387 14497422 chr2R 14498553 14498572 1360 4 1162 1.0 2.0 1.5 1.6 1185 chr2R 14497387 3` UTR Cpsf160 - chr2R 14497980 intron Cpsf160 - chr2R 14498572 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-136 455 chr2R 14524845 14524881 chr2R 14524942 14524961 8 90 3.0 0.0 1.5 3.2 116 chr2R 14524845 intergenic not near genes chr2R 14524903 intergenic not near genes chr2R 14524961 intergenic not near genes chr2R_8_14520001 chr2R_14520001 RAL-136 456 chr2R 14530784 14530791 chr2R 14530845 14530862 4 66 1.0 5.0 3.0 1.0 78 chr2R 14530784 intron ttv + chr2R 14530823 intron ttv + chr2R 14530862 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-136 457 chr2R 14653906 14653916 chr2R 14654004 14654010 6 98 5.0 3.0 4.0 1.2 104 chr2R 14653906 intergenic not near genes chr2R 14653958 intergenic not near genes chr2R 14654010 intergenic not near genes chr2R_6_14650001 chr2R_14650001 RAL-136 458 chr2R 14653918 14653928 chr2R 14654002 14654027 8 94 2.5 2.0 2.2 2.5 109 chr2R 14653918 intergenic not near genes chr2R 14653972 intergenic not near genes chr2R 14654027 intergenic not near genes chr2R_8_14650001 chr2R_14650001 RAL-136 459 chr2R 14690114 14690144 chr2R 14690206 14690236 14 90 0.5 3.5 2.0 4.7 122 chr2R 14690114 intron mspo - chr2R 14690175 intron mspo - chr2R 14690236 intron mspo - chr2R_14_14690001 chr2R_14690001 RAL-136 460 chr2R 14699439 14699472 chr2R 14699822 14699854 7 376 1.5 0.5 1.0 3.5 415 chr2R 14699439 intron mspo - chr2R 14699646 intron mspo - chr2R 14699854 intron mspo - chr2R_7_14695001 chr2R_14695001 RAL-136 461 chr2R 14728256 14728274 chr2R 14728339 14728357 4 80 2.0 1.0 1.5 1.6 101 chr2R 14728256 intergenic not near genes chr2R 14728306 intergenic not near genes chr2R 14728357 intergenic not near genes chr2R_4_14725001 chr2R_14725001 RAL-136 462 chr2R 14748864 14748888 chr2R 14748963 14748979 4 95 1.0 0.0 0.5 2.7 115 chr2R 14748864 intergenic AttB + chr2R 14748922 intergenic AttB + chr2R 14748979 intergenic AttB + chr2R_4_14745001 chr2R_14745001 RAL-136 463 chr2R 14850057 14850085 chr2R 14850162 14850191 6 104 18.5 20.0 19.2 0.3 134 chr2R 14850057 exon SMC2 - chr2R 14850124 intron SMC2 - chr2R 14850191 exon SMC2 - chr2R_6_14850001 chr2R_14850001 RAL-136 464 chr2R 14922142 14922154 chr2R 14922218 14922223 4 72 3.5 1.0 2.2 1.2 81 chr2R 14922142 intron CG10249 - chr2R 14922182 intron CG10249 - chr2R 14922223 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-136 465 chr2R 15004740 15004751 chr2R 15005057 15005076 jockey 11 324 4.0 2.0 3.0 2.8 336 chr2R 15004740 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005076 intergenic not near genes chr2R_11_15000001 chr2R_15000001 RAL-136 466 chr2R 15051086 15051102 chr2R 15051164 15051179 4 79 2.0 2.0 2.0 1.3 93 chr2R 15051086 intergenic not near genes chr2R 15051132 intergenic not near genes chr2R 15051179 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-136 467 chr2R 15084980 15085007 chr2R 15092029 15092056 297 7 7047 2.5 1.0 1.8 2.5 7076 chr2R 15084980 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-136 468 chr2R 15094892 15094912 chr2R 15094969 15094979 6 72 1.5 2.0 1.8 2.1 87 chr2R 15094892 intergenic not near genes chr2R 15094936 intergenic not near genes chr2R 15094979 intergenic not near genes chr2R_6_15090001 chr2R_15090001 RAL-136 469 chr2R 15119334 15119351 chr2R 15127801 15127831 Tirant 4 8477 4.5 2.5 3.5 0.9 8497 chr2R 15119334 intron chn + chr2R 15123582 intron chn + chr2R 15127831 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-136 470 chr2R 15160786 15160803 chr2R 15160877 15160900 6 98 2.0 1.0 1.5 2.4 114 chr2R 15160786 intron igl + chr2R 15160843 intron igl + chr2R 15160900 intron igl + chr2R_6_15160001 chr2R_15160001 RAL-136 471 chr2R 15247857 15247876 chr2R 15248009 15248040 5 161 2.5 2.0 2.2 1.6 183 chr2R 15247857 intergenic not near genes chr2R 15247948 intergenic not near genes chr2R 15248040 intergenic not near genes chr2R_5_15245001 chr2R_15245001 RAL-136 472 chr2R 15259080 15259087 chr2R 15259164 15259171 4 84 1.0 2.5 1.8 1.4 91 chr2R 15259080 intron ItgalphaPS4 + chr2R 15259126 intron ItgalphaPS4 + chr2R 15259171 intron ItgalphaPS4 + chr2R_4_15255001 chr2R_15255001 RAL-136 473 chr2R 15290097 15290126 chr2R 15290372 15290379 10 269 1.5 3.0 2.2 3.1 282 chr2R 15290097 intron Trpm - chr2R 15290238 intron Trpm - chr2R 15290379 intron Trpm - chr2R_10_15290001 chr2R_15290001 RAL-136 474 chr2R 15294874 15294890 chr2R 15294949 15294981 7 83 4.5 3.0 3.8 1.5 107 chr2R 15294874 intron,3` UTR Trpm -,CR44241 - chr2R 15294928 intron,3` UTR Trpm -,CR44241 - chr2R 15294981 intron,3` UTR Trpm -,CR44241 - chr2R_7_15290001 chr2R_15290001 RAL-136 475 chr2R 15296165 15296318 chr2R 15296243 15296426 14 100 5.5 2.0 3.8 2.9 261 chr2R 15296165 intron Trpm - chr2R 15296296 intron Trpm - chr2R 15296426 intron Trpm - chr2R_14_15295001 chr2R_15295001 RAL-136 476 chr2R 15497670 15497696 chr2R 15497748 15497774 5 74 2.5 1.5 2.0 1.7 104 chr2R 15497670 intergenic CG12964 - chr2R 15497722 intergenic CG12964 - chr2R 15497774 intergenic not near genes chr2R_5_15495001 chr2R_15495001 RAL-136 477 chr2R 15624854 15624880 chr2R 15624933 15624959 6 79 1.0 1.0 1.0 3.0 105 chr2R 15624854 intron CG42524 + chr2R 15624906 intron CG42524 + chr2R 15624959 intron CG42524 + chr2R_6_15620001 chr2R_15620001 RAL-136 478 chr2R 15645682 15645699 chr2R 15645774 15645793 4 91 2.5 0.0 1.2 1.8 111 chr2R 15645682 intron CG42524 + chr2R 15645738 intron CG42524 + chr2R 15645793 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-136 479 chr2R 15700244 15700270 chr2R 15700359 15700385 8 115 1.0 4.0 2.5 2.3 141 chr2R 15700244 intron,5` UTR CG30080 -,CG42662 - chr2R 15700314 intron,5` UTR CG30080 -,CG42662 - chr2R 15700385 intron,5` UTR CG30080 -,CG42662 - chr2R_8_15700001 chr2R_15700001 RAL-136 480 chr2R 16017197 16017212 chr2R 16017364 16017380 5 166 1.0 5.0 3.0 1.2 183 chr2R 16017197 intergenic CG8397 - chr2R 16017288 intergenic CG8397 -,CG8399 + chr2R 16017380 intergenic CG8397 -,CG8399 + chr2R_5_16015001 chr2R_16015001 RAL-136 481 chr2R 16380126 16380156 chr2R 16380219 16380254 12 94 1.5 1.5 1.5 4.8 128 chr2R 16380126 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380190 3` UTR CR45317 - chr2R 16380254 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_12_16380001 chr2R_16380001 RAL-136 482 chr2R 16503876 16503894 chr2R 16503966 16503984 6 87 4.5 4.0 4.2 1.2 108 chr2R 16503876 intron Sema-2a + chr2R 16503930 intron Sema-2a + chr2R 16503984 intron Sema-2a + chr2R_6_16500001 chr2R_16500001 RAL-136 483 chr2R 16511805 16511822 chr2R 16511967 16511975 7 160 3.0 0.0 1.5 2.8 170 chr2R 16511805 intron Sema-2a + chr2R 16511890 intron Sema-2a + chr2R 16511975 intron Sema-2a + chr2R_7_16510001 chr2R_16510001 RAL-136 484 chr2R 16521489 16521520 chr2R 16521571 16521588 6 78 1.0 2.0 1.5 2.4 99 chr2R 16521489 intron Sema-2a + chr2R 16521538 intron Sema-2a + chr2R 16521588 intron Sema-2a + chr2R_6_16520001 chr2R_16520001 RAL-136 485 chr2R 16539653 16539663 chr2R 16544847 16544872 copia 6 5204 1.0 1.5 1.2 2.7 5219 chr2R 16539653 intergenic not near genes chr2R 16542262 intergenic not near genes chr2R 16544872 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-136 486 chr2R 16554114 16554140 chr2R 16554466 16554492 4 350 2.5 1.5 2.0 1.3 378 chr2R 16554114 intron Syn2 + chr2R 16554303 intron Syn2 + chr2R 16554492 intron Syn2 + chr2R_4_16550001 chr2R_16550001 RAL-136 487 chr2R 16775647 16775673 chr2R 16775908 16775931 6 262 0.5 1.5 1.0 3.0 284 chr2R 16775647 3` UTR Arp53D + chr2R 16775789 intergenic Arp53D + chr2R 16775931 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-136 488 chr2R 16838620 16838696 chr2R 16838686 16838792 7 76 0.0 0.0 0.0 7.0 172 chr2R 16838620 5` UTR CR43650 + chr2R 16838706 5` UTR CR43650 + chr2R 16838792 5` UTR CR43650 + chr2R_7_16835001 chr2R_16835001 RAL-136 489 chr2R 17223886 17223894 chr2R 17223960 17223962 4 77 0.0 1.5 0.8 2.2 76 chr2R 17223886 intron mbl + chr2R 17223924 intron mbl + chr2R 17223962 intron mbl + chr2R_4_17220001 chr2R_17220001 RAL-136 490 chr2R 17236512 17236540 chr2R 17241712 17241744 copia 10 5201 1.0 3.5 2.2 3.1 5232 chr2R 17236512 intron mbl + chr2R 17239128 intron mbl + chr2R 17241744 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-136 491 chr2R 17277237 17277241 chr2R 17277628 17277648 jockey 4 398 2.0 1.0 1.5 1.6 411 chr2R 17277237 intron mbl + chr2R 17277442 intron mbl + chr2R 17277648 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-136 492 chr2R 17500674 17500692 chr2R 17500737 17500752 6 67 0.0 0.5 0.2 5.0 78 chr2R 17500674 intergenic not near genes chr2R 17500713 intergenic not near genes chr2R 17500752 intergenic not near genes chr2R_6_17500001 chr2R_17500001 RAL-136 493 chr2R 17655203 17655234 chr2R 17655276 17655305 8 71 3.0 2.0 2.5 2.3 102 chr2R 17655203 intron CCHa1-R - chr2R 17655254 intron CCHa1-R - chr2R 17655305 intron CCHa1-R - chr2R_8_17655001 chr2R_17655001 RAL-136 494 chr2R 17710003 17710116 chr2R 17710078 17710194 8 75 1.0 2.5 1.8 2.9 191 chr2R 17710003 intron CG6424 - chr2R 17710098 intron CG6424 - chr2R 17710194 intron CG6424 - chr2R_8_17710001 chr2R_17710001 RAL-136 495 chr2R 17784027 17784050 chr2R 17784266 17784289 pogo 5 237 4.5 3.5 4.0 1.0 262 chr2R 17784027 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784289 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-136 496 chr2R 17886629 17886654 chr2R 17886711 17886736 9 79 3.0 1.5 2.2 2.8 107 chr2R 17886629 intron Elk + chr2R 17886682 intron Elk + chr2R 17886736 intron Elk + chr2R_9_17885001 chr2R_17885001 RAL-136 497 chr2R 17929125 17929149 chr2R 17929218 17929242 6 92 3.5 4.5 4.0 1.2 117 chr2R 17929125 intergenic not near genes chr2R 17929184 intergenic not near genes chr2R 17929242 intergenic not near genes chr2R_6_17925001 chr2R_17925001 RAL-136 498 chr2R 17958437 17958452 chr2R 17958526 17958539 11 88 4.0 6.5 5.2 1.8 102 chr2R 17958437 intergenic not near genes chr2R 17958488 intergenic not near genes chr2R 17958539 intergenic not near genes chr2R_11_17955001 chr2R_17955001 RAL-136 499 chr2R 17958454 17958465 chr2R 17958525 17958554 8 85 3.0 6.5 4.8 1.4 100 chr2R 17958454 intergenic not near genes chr2R 17958504 intergenic not near genes chr2R 17958554 intergenic not near genes chr2R_8_17955001 chr2R_17955001 RAL-136 500 chr2R 18111713 18111716 chr2R 18115567 18115585 F-element 5 3864 0.0 2.5 1.2 2.3 3872 chr2R 18111713 intergenic not near genes chr2R 18113649 intergenic not near genes chr2R 18115585 intergenic not near genes chr2R_5_18110001 chr2R_18110001 RAL-136 501 chr2R 18124346 18124371 chr2R 18124417 18124448 10 73 0.0 2.5 1.2 4.5 102 chr2R 18124346 intron stau - chr2R 18124397 intron stau - chr2R 18124448 intron stau - chr2R_10_18120001 chr2R_18120001 RAL-136 502 chr2R 18241812 18241835 chr2R 18241907 18241928 7 91 3.0 3.0 3.0 1.8 116 chr2R 18241812 intergenic not near genes chr2R 18241870 intergenic not near genes chr2R 18241928 intergenic not near genes chr2R_7_18240001 chr2R_18240001 RAL-136 503 chr2R 18358395 18358422 chr2R 18372601 18372634 roo 8 14210 3.5 3.0 3.2 1.9 14239 chr2R 18358395 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-136 504 chr2R 18405548 18405781 chr2R 18405683 18405862 4 93 0.0 0.0 0.0 4.0 314 chr2R 18405548 intergenic GstE5 +,GstE6 + chr2R 18405705 intergenic GstE6 +,GstE5 + chr2R 18405862 intergenic GstE6 + chr2R_4_18405001 chr2R_18405001 RAL-136 505 chr2R 18486854 18486878 chr2R 18487106 18487139 8 258 4.5 2.5 3.5 1.8 285 chr2R 18486854 intron CG30116 - chr2R 18486996 intron CG30116 - chr2R 18487139 intron CG30116 - chr2R_8_18485001 chr2R_18485001 RAL-136 506 chr2R 18575815 18575819 chr2R 18581985 18582007 3S18 4 6180 4.0 4.0 4.0 0.8 6192 chr2R 18575815 intron GEFmeso - chr2R 18578911 intron GEFmeso - chr2R 18582007 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-136 507 chr2R 18590878 18590897 chr2R 18600018 18600048 roo 9 9148 5.0 8.0 6.5 1.2 9170 chr2R 18590878 intron GEFmeso - chr2R 18595463 intron GEFmeso - chr2R 18600048 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-136 508 chr2R 18601153 18601159 chr2R 18601210 18601236 4 70 1.5 5.0 3.2 1.0 83 chr2R 18601153 intron GEFmeso - chr2R 18601194 intron GEFmeso - chr2R 18601236 intron GEFmeso - chr2R_4_18600001 chr2R_18600001 RAL-136 509 chr2R 18689300 18689310 chr2R 18689863 18689891 5 577 3.5 2.5 3.0 1.2 591 chr2R 18689300 intron Sik3 + chr2R 18689596 intron Sik3 + chr2R 18689891 intron Sik3 + chr2R_5_18685001 chr2R_18685001 RAL-136 510 chr2R 18819054 18819059 chr2R 18819131 18819136 4 77 0.5 1.0 0.8 2.2 82 chr2R 18819054 intergenic Phb2 + chr2R 18819095 intergenic Phb2 + chr2R 18819136 intergenic Phb2 + chr2R_4_18815001 chr2R_18815001 RAL-136 511 chr2R 18862308 18862401 chr2R 18862395 18862472 4 78 0.0 0.0 0.0 4.0 164 chr2R 18862308 intergenic Jheh3 - chr2R 18862390 intergenic Jheh3 -,CG43069 + chr2R 18862472 intergenic CG43069 +,Jheh3 - chr2R_4_18860001 chr2R_18860001 RAL-136 512 chr2R 18924272 18924304 chr2R 18924351 18924380 6 77 4.0 1.5 2.8 1.6 108 chr2R 18924272 intron sano + chr2R 18924326 intron sano + chr2R 18924380 intron sano + chr2R_6_18920001 chr2R_18920001 RAL-136 513 chr2R 18983887 18983903 chr2R 18984608 18984635 5 729 3.5 3.0 3.2 1.2 748 chr2R 18983887 intergenic not near genes chr2R 18984261 intergenic not near genes chr2R 18984635 intergenic not near genes chr2R_5_18980001 chr2R_18980001 RAL-136 514 chr2R 19014619 19014650 chr2R 19014699 19014730 7 78 1.0 1.0 1.0 3.5 111 chr2R 19014619 intergenic not near genes chr2R 19014674 intergenic not near genes chr2R 19014730 intergenic not near genes chr2R_7_19010001 chr2R_19010001 RAL-136 515 chr2R 19015443 19015463 chr2R 19015531 19015547 5 85 5.0 9.5 7.2 0.6 104 chr2R 19015443 intergenic not near genes chr2R 19015495 intergenic not near genes chr2R 19015547 intergenic not near genes chr2R_5_19015001 chr2R_19015001 RAL-136 516 chr2R 19300963 19300993 chr2R 19301046 19301074 8 77 3.0 3.0 3.0 2.0 111 chr2R 19300963 intron Tab2 + chr2R 19301018 intron Tab2 + chr2R 19301074 intron Tab2 + chr2R_8_19300001 chr2R_19300001 RAL-136 517 chr2R 19505262 19505279 chr2R 19505380 19505401 4 117 3.5 1.0 2.2 1.2 139 chr2R 19505262 5` UTR CR44472 + chr2R 19505332 5` UTR CR44472 + chr2R 19505401 5` UTR CR44472 + chr2R_4_19505001 chr2R_19505001 RAL-136 518 chr2R 19551656 19551677 chr2R 19551762 19551786 7 108 1.5 4.5 3.0 1.8 130 chr2R 19551656 intron sm - chr2R 19551721 intron sm - chr2R 19551786 intron sm - chr2R_7_19550001 chr2R_19550001 RAL-136 519 chr2R 19572200 19572213 chr2R 19572268 19572296 6 75 0.5 6.5 3.5 1.3 96 chr2R 19572200 intron sm - chr2R 19572248 intron sm - chr2R 19572296 intron sm - chr2R_6_19570001 chr2R_19570001 RAL-136 520 chr2R 19776593 19776628 chr2R 19779916 19779938 jockey 8 3320 1.5 5.0 3.2 1.9 3345 chr2R 19776593 intergenic not near genes chr2R 19778266 intergenic not near genes chr2R 19779938 intergenic not near genes chr2R_8_19775001 chr2R_19775001 RAL-136 521 chr2R 19907865 19907890 chr2R 19908009 19908031 9 142 3.5 3.0 3.2 2.1 166 chr2R 19907865 intergenic not near genes chr2R 19907948 intergenic not near genes chr2R 19908031 intergenic not near genes chr2R_9_19905001 chr2R_19905001 RAL-136 522 chr2R 19957447 19957464 chr2R 19962630 19962660 copia 6 5189 2.5 2.0 2.2 1.9 5213 chr2R 19957447 intergenic CG44623 + chr2R 19960054 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-136 523 chr2R 19969826 19969830 chr2R 19969906 19969912 4 81 7.5 2.5 5.0 0.7 86 chr2R 19969826 intergenic not near genes chr2R 19969869 intergenic not near genes chr2R 19969912 intergenic not near genes chr2R_4_19965001 chr2R_19965001 RAL-136 524 chr2R 20199647 20199681 chr2R 20199777 20199801 6 124 1.5 3.0 2.2 1.9 154 chr2R 20199647 intergenic not near genes chr2R 20199724 intergenic not near genes chr2R 20199801 intergenic not near genes chr2R_6_20195001 chr2R_20195001 RAL-136 525 chr2R 20382349 20382359 chr2R 20382422 20382436 4 77 5.0 2.5 3.8 0.8 87 chr2R 20382349 intergenic not near genes chr2R 20382392 intergenic not near genes chr2R 20382436 intergenic not near genes chr2R_4_20380001 chr2R_20380001 RAL-136 526 chr2R 20573109 20573132 chr2R 20573202 20573231 8 96 2.5 4.0 3.2 1.9 122 chr2R 20573109 intron qsm - chr2R 20573170 intron qsm - chr2R 20573231 intron qsm - chr2R_8_20570001 chr2R_20570001 RAL-136 527 chr2R 20601742 20601754 chr2R 20601815 20601839 4 82 1.0 2.5 1.8 1.4 97 chr2R 20601742 intron bl + chr2R 20601790 intron bl + chr2R 20601839 intron bl + chr2R_4_20600001 chr2R_20600001 RAL-136 528 chr2R 20690760 20690790 chr2R 20690836 20690858 4 69 1.0 4.5 2.8 1.1 98 chr2R 20690760 intergenic not near genes chr2R 20690809 intergenic not near genes chr2R 20690858 intergenic not near genes chr2R_4_20690001 chr2R_20690001 RAL-136 529 chr2R 20739447 20739479 chr2R 20744215 20744240 F-element 9 4764 1.0 3.0 2.0 3.0 4793 chr2R 20739447 intron dpr + chr2R 20741844 intron dpr + chr2R 20744240 intron dpr + chr2R_9_20740001 chr2R_20740001 RAL-136 530 chr2R 20830538 20830549 chr2R 20830618 20830626 5 79 11.0 3.5 7.2 0.6 88 chr2R 20830538 intron,intron insc -,sktl - chr2R 20830582 intron,intron insc -,sktl - chr2R 20830626 intron,intron insc -,sktl - chr2R_5_20830001 chr2R_20830001 RAL-136 531 chr2R 20830554 20830570 chr2R 20830617 20830649 4 71 4.0 3.0 3.5 0.9 95 chr2R 20830554 intron,intron insc -,sktl - chr2R 20830602 intron,intron insc -,sktl - chr2R 20830649 intron,intron insc -,sktl - chr2R_4_20830001 chr2R_20830001 RAL-136 532 chr2R 20967026 20967040 chr2R 20967102 20967115 6 76 5.0 0.0 2.5 1.7 89 chr2R 20967026 intergenic not near genes chr2R 20967070 intergenic not near genes chr2R 20967115 intergenic not near genes chr2R_6_20965001 chr2R_20965001 RAL-136 533 chr2R 21057493 21057504 chr2R 21057568 21057579 4 78 0.0 0.0 0.0 4.0 86 chr2R 21057493 intergenic cpa +,shg - chr2R 21057536 intergenic cpa +,shg - chr2R 21057579 intergenic cpa +,shg - chr2R_4_21055001 chr2R_21055001 RAL-136 534 chr2R 21151122 21151136 chr2R 21153749 21153757 opus 4 2624 6.0 2.0 4.0 0.8 2635 chr2R 21151122 intron CG30389 - chr2R 21152440 intron CG30389 - chr2R 21153757 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-136 535 chr2R 21322949 21322975 chr2R 21323019 21323043 5 65 1.0 3.0 2.0 1.7 94 chr2R 21322949 5` UTR CG30394 - chr2R 21322996 5` UTR CG30394 - chr2R 21323043 5` UTR CG30394 - chr2R_5_21320001 chr2R_21320001 RAL-136 536 chr2R 21508073 21508089 chr2R 21508154 21508170 5 80 2.0 3.0 2.5 1.4 97 chr2R 21508073 intron MESK2 + chr2R 21508122 intron MESK2 + chr2R 21508170 intron MESK2 + chr2R_5_21505001 chr2R_21505001 RAL-136 537 chr2R 21671552 21671573 chr2R 21671630 21671647 10 75 0.5 3.0 1.8 3.6 95 chr2R 21671552 3` UTR NC2alpha + chr2R 21671600 intergenic NC2alpha +,CG15676 + chr2R 21671647 intergenic CG15676 +,NC2alpha + chr2R_10_21670001 chr2R_21670001 RAL-136 538 chr2R 21700162 21700182 chr2R 21700245 21700266 9 83 2.0 3.0 2.5 2.6 104 chr2R 21700162 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700266 intron HmgZ - chr2R_9_21700001 chr2R_21700001 RAL-136 539 chr2R 21753087 21753113 chr2R 21753572 21753591 roo 6 480 3.5 1.5 2.5 1.7 504 chr2R 21753087 intergenic not near genes chr2R 21753339 intergenic not near genes chr2R 21753591 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-136 540 chr2R 21809537 21809549 chr2R 21817776 21817779 roo 4 8236 3.0 7.0 5.0 0.7 8242 chr2R 21809537 intergenic not near genes chr2R 21813658 intergenic not near genes chr2R 21817779 intergenic not near genes chr2R_4_21810001 chr2R_21810001 RAL-136 541 chr2R 21919887 21919904 chr2R 21919960 21919983 7 80 1.5 2.5 2.0 2.3 96 chr2R 21919887 intron Fili + chr2R 21919935 intron Fili + chr2R 21919983 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-136 542 chr2R 21946774 21946799 chr2R 21946870 21946876 5 90 0.5 1.5 1.0 2.5 102 chr2R 21946774 intergenic not near genes chr2R 21946825 intergenic not near genes chr2R 21946876 intergenic not near genes chr2R_5_21945001 chr2R_21945001 RAL-136 543 chr2R 21963196 21963212 chr2R 21963281 21963297 4 85 3.0 0.0 1.5 1.6 101 chr2R 21963196 intergenic not near genes chr2R 21963246 intergenic not near genes chr2R 21963297 intergenic not near genes chr2R_4_21960001 chr2R_21960001 RAL-136 544 chr2R 22014212 22014225 chr2R 22014274 22014294 5 66 3.5 2.5 3.0 1.2 82 chr2R 22014212 intron CG34370 - chr2R 22014253 intron CG34370 - chr2R 22014294 intron CG34370 - chr2R_5_22010001 chr2R_22010001 RAL-136 545 chr2R 22035547 22035575 chr2R 22035634 22035662 9 86 0.0 2.0 1.0 4.5 115 chr2R 22035547 intron,3` UTR CG34370 -,CG9308 + chr2R 22035604 intron,3` UTR CG34370 -,CG9308 + chr2R 22035662 intron,3` UTR CG34370 -,CG9308 + chr2R_9_22035001 chr2R_22035001 RAL-136 546 chr2R 22072686 22072710 chr2R 22072771 22072795 10 83 4.0 2.0 3.0 2.5 109 chr2R 22072686 intron CG11474 - chr2R 22072740 intron CG11474 - chr2R 22072795 intron CG11474 - chr2R_10_22070001 chr2R_22070001 RAL-136 547 chr2R 22360381 22360398 chr2R 22360814 22360830 jockey 4 430 6.0 1.5 3.8 0.8 449 chr2R 22360381 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-136 548 chr2R 22460385 22460405 chr2R 22460463 22460484 5 78 2.0 2.5 2.2 1.6 99 chr2R 22460385 intron CG10384 + chr2R 22460434 intron CG10384 + chr2R 22460484 intron CG10384 + chr2R_5_22460001 chr2R_22460001 RAL-136 549 chr2R 22465213 22465232 chr2R 22465521 22465542 BS 4 309 4.0 0.0 2.0 1.3 329 chr2R 22465213 intron CG10384 + chr2R 22465378 intron CG10384 + chr2R 22465542 intron CG10384 + chr2R_4_22465001 chr2R_22465001 RAL-136 550 chr2R 22525755 22525779 chr2R 22529301 22529333 jockey 9 3551 2.5 3.5 3.0 2.2 3578 chr2R 22525755 intron px - chr2R 22527544 intron px - chr2R 22529333 intron px - chr2R_9_22525001 chr2R_22525001 RAL-136 551 chr2R 22623453 22623485 chr2R 22623591 22623621 14 136 2.0 3.5 2.8 3.7 168 chr2R 22623453 intron CG33143 + chr2R 22623537 intron CG33143 + chr2R 22623621 intron CG33143 + chr2R_14_22620001 chr2R_22620001 RAL-136 552 chr2R 22756554 22756582 chr2R 22756631 22756658 13 74 3.0 3.0 3.0 3.2 104 chr2R 22756554 intron,intron CG42260 -,CR30267 + chr2R 22756606 intron,intron CG42260 -,CR30267 + chr2R 22756658 intron,intron CG42260 -,CR30267 + chr2R_13_22755001 chr2R_22755001 RAL-136 553 chr2R 22774971 22775001 chr2R 22775378 22775420 jockey 14 415 2.5 2.0 2.2 4.4 449 chr2R 22774971 intron CG42260 - chr2R 22775196 intron CG42260 - chr2R 22775420 intron CG42260 - chr2R_14_22775001 chr2R_22775001 RAL-136 554 chr2R 22781957 22781991 chr2R 22782144 22782169 7 184 3.0 2.5 2.8 1.8 212 chr2R 22781957 intron CG42260 - chr2R 22782063 intron CG42260 - chr2R 22782169 intron CG42260 - chr2R_7_22780001 chr2R_22780001 RAL-136 555 chr2R 22789827 22789836 chr2R 22790104 22790122 4 282 5.0 4.0 4.5 0.7 295 chr2R 22789827 intron CG42260 - chr2R 22789974 intron CG42260 - chr2R 22790122 intron CG42260 - chr2R_4_22785001 chr2R_22785001 RAL-136 556 chr2R 22834901 22834922 chr2R 22837655 22837690 5 2768 4.5 10.5 7.5 0.6 2789 chr2R 22834901 intron CG12490 + chr2R 22836296 intron CG12490 + chr2R 22837690 intron CG9825 + chr2R_5_22835001 chr2R_22835001 RAL-136 557 chr2R 22860773 22860805 chr2R 22860864 22860896 5 88 2.0 0.5 1.2 2.3 123 chr2R 22860773 intergenic not near genes chr2R 22860834 intergenic not near genes chr2R 22860896 intergenic not near genes chr2R_5_22860001 chr2R_22860001 RAL-136 558 chr2R 22861719 22861745 chr2R 22861789 22861817 10 72 4.5 1.0 2.8 2.6 98 chr2R 22861719 intergenic not near genes chr2R 22861768 intergenic not near genes chr2R 22861817 intergenic not near genes chr2R_10_22860001 chr2R_22860001 RAL-136 559 chr2R 23045334 23045360 chr2R 23045548 23045572 6 210 0.5 2.5 1.5 2.4 238 chr2R 23045334 intron twi + chr2R 23045453 intron twi + chr2R 23045572 intron twi + chr2R_6_23045001 chr2R_23045001 RAL-136 560 chr2R 23070412 23070445 chr2R 23070503 23070541 20 93 2.5 4.0 3.2 4.8 129 chr2R 23070412 intron l(2)k09913 + chr2R 23070476 intron l(2)k09913 + chr2R 23070541 intron l(2)k09913 + chr2R_20_23070001 chr2R_23070001 RAL-136 561 chr2R 23122838 23122858 chr2R 23123250 23123270 10 419 3.5 4.0 3.8 2.1 432 chr2R 23122838 intergenic not near genes chr2R 23123054 intergenic not near genes chr2R 23123270 intergenic not near genes chr2R_10_23120001 chr2R_23120001 RAL-136 562 chr2R 23175042 23175068 chr2R 23175119 23175145 12 70 3.0 4.5 3.8 2.5 103 chr2R 23175042 intron CG34371 - chr2R 23175094 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_12_23175001 chr2R_23175001 RAL-136 563 chr2R 23188562 23188582 chr2R 23188635 23188660 5 73 1.5 2.5 2.0 1.7 98 chr2R 23188562 intron CG34371 - chr2R 23188611 intron CG34371 - chr2R 23188660 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-136 564 chr2R 23275652 23275678 chr2R 23275741 23275760 7 87 4.5 1.0 2.8 1.8 108 chr2R 23275652 intergenic ord - chr2R 23275706 intergenic ord - chr2R 23275760 intergenic ord - chr2R_7_23275001 chr2R_23275001 RAL-136 565 chr2R 23356286 23356306 chr2R 23356361 23356383 6 82 3.5 3.0 3.2 1.4 97 chr2R 23356286 3` UTR Rpi + chr2R 23356334 3` UTR Rpi + chr2R 23356383 3` UTR,3` UTR Rpi +,CG3500 - chr2R_6_23355001 chr2R_23355001 RAL-136 566 chr2R 23423750 23423772 chr2R 23423896 23423926 7 156 1.0 3.5 2.2 2.2 176 chr2R 23423750 intron CG9815 - chr2R 23423838 intron CG9815 - chr2R 23423926 intron CG9815 - chr2R_7_23420001 chr2R_23420001 RAL-136 567 chr2R 23508927 23508945 chr2R 23509037 23509061 4 114 2.0 3.5 2.8 1.1 134 chr2R 23508927 intergenic not near genes chr2R 23508994 intergenic not near genes chr2R 23509061 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-136 568 chr2R 23674181 23674190 chr2R 23674261 23674270 4 80 7.0 4.0 5.5 0.6 89 chr2R 23674181 intron Pde8 + chr2R 23674226 intron Pde8 + chr2R 23674270 intron Pde8 + chr2R_4_23670001 chr2R_23670001 RAL-136 569 chr2R 23784486 23784505 chr2R 23784550 23784575 7 74 3.0 1.5 2.2 2.2 89 chr2R 23784486 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784575 intron CG9850 - chr2R_7_23780001 chr2R_23780001 RAL-136 570 chr2R 23914321 23914332 chr2R 23921935 23921954 412 5 7614 2.0 1.0 1.5 2.0 7633 chr2R 23914321 exon kcc + chr2R 23918138 intron kcc + chr2R 23921954 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-136 571 chr2R 23926839 23926856 chr2R 23926921 23926938 4 81 0.5 2.0 1.2 1.8 99 chr2R 23926839 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926888 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926938 3` UTR Ca-P60A - chr2R_4_23925001 chr2R_23925001 RAL-136 572 chr2R 24031381 24031411 chr2R 24031465 24031495 14 82 1.0 3.0 2.0 4.7 114 chr2R 24031381 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031495 intergenic Chi -,CG30172 - chr2R_14_24030001 chr2R_24030001 RAL-136 573 chr2R 24353443 24353457 chr2R 24361799 24361816 roo 4 8360 1.5 5.5 3.5 0.9 8373 chr2R 24353443 intron,intron bs +,CR44811 - chr2R 24357630 intron,intron bs +,CR44811 - chr2R 24361816 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-136 574 chr2R 24383829 24383858 chr2R 24383910 24383924 4 77 3.0 1.5 2.2 1.2 95 chr2R 24383829 intron mAChR-A - chr2R 24383876 intron mAChR-A - chr2R 24383924 exon mAChR-A - chr2R_4_24380001 chr2R_24380001 RAL-136 575 chr2R 24590127 24590145 chr2R 24590203 24590221 8 84 5.0 2.5 3.8 1.7 94 chr2R 24590127 intron pio + chr2R 24590174 intron pio + chr2R 24590221 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-136 576 chr2R 24593547 24593581 chr2R 24593694 24593708 6 141 4.5 2.0 3.2 1.4 161 chr2R 24593547 intron pio + chr2R 24593628 intron pio + chr2R 24593708 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-136 577 chr2R 24636905 24636931 chr2R 24636991 24637011 5 84 2.0 0.5 1.2 2.3 106 chr2R 24636905 intron CG13594 - chr2R 24636958 intron CG13594 - chr2R 24637011 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-136 578 chr2R 24688963 24688989 chr2R 24689044 24689072 9 80 2.0 2.5 2.2 2.8 109 chr2R 24688963 intergenic not near genes chr2R 24689018 intergenic not near genes chr2R 24689072 intergenic not near genes chr2R_9_24685001 chr2R_24685001 RAL-136 579 chr2R 24719798 24719811 chr2R 24719910 24719923 4 112 6.5 3.0 4.8 0.7 125 chr2R 24719798 intron Mid1 - chr2R 24719860 intron Mid1 - chr2R 24719923 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-136 580 chr2R 24719813 24719826 chr2R 24719908 24719924 6 102 3.5 3.0 3.2 1.4 111 chr2R 24719813 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719924 intron Mid1 - chr2R_6_24715001 chr2R_24715001 RAL-136 581 chr2R 24721267 24721280 chr2R 24721404 24721431 5 146 3.0 4.0 3.5 1.1 164 chr2R 24721267 intron Mid1 - chr2R 24721349 intron Mid1 - chr2R 24721431 intron Mid1 - chr2R_5_24720001 chr2R_24720001 RAL-136 582 chr2R 24727892 24727914 chr2R 24735396 24735402 mdg1 9 7500 2.5 6.5 4.5 1.6 7510 chr2R 24727892 intron Mid1 - chr2R 24731647 intron Mid1 - chr2R 24735402 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-136 583 chr2R 24763608 24763644 chr2R 24765584 24765620 G2 7 1971 3.0 4.0 3.5 1.6 2012 chr2R 24763608 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_7_24760001 chr2R_24760001 RAL-136 584 chr2R 24859840 24859870 chr2R 24859926 24859952 7 85 0.5 4.0 2.2 2.2 112 chr2R 24859840 5` UTR CR44829 + chr2R 24859896 5` UTR CR44829 + chr2R 24859952 5` UTR CR44829 + chr2R_7_24855001 chr2R_24855001 RAL-136 585 chr2R 25014545 25014574 chr2R 25014621 25014650 13 70 3.0 2.0 2.5 3.7 105 chr2R 25014545 intron uzip + chr2R 25014598 intron uzip + chr2R 25014650 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-136 586 chr2R 25022653 25022666 chr2R 25022728 25022733 5 79 0.5 1.0 0.8 2.8 80 chr2R 25022653 intron uzip + chr2R 25022693 intron uzip + chr2R 25022733 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-136 587 chr2R 25081616 25081637 chr2R 25082700 25082714 7 1087 3.0 5.5 4.2 1.3 1098 chr2R 25081616 intron gol - chr2R 25082165 intron gol - chr2R 25082714 intron gol - chr2R_7_25080001 chr2R_25080001 RAL-136 588 chr2R 25104776 25104810 chr2R 25104901 25104935 5 124 2.0 3.5 2.8 1.3 159 chr2R 25104776 intron lov - chr2R 25104856 intron lov - chr2R 25104935 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-136 589 chr2R 25141654 25141671 chr2R 25159338 25159353 roo 4 17684 3.0 3.0 3.0 1.0 17699 chr2R 25141654 intergenic not near genes chr2R 25150504 intergenic not near genes chr2R 25159353 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-136 590 chr2R 25201236 25201252 chr2R 25201359 25201378 4 122 1.5 4.5 3.0 1.0 142 chr2R 25201236 intron CG9380 - chr2R 25201307 intron CG9380 - chr2R 25201378 intron CG9380 - chr2R_4_25200001 chr2R_25200001 RAL-136 591 chr3L 68990 69011 chr3L 69076 69098 6 85 2.5 4.5 3.5 1.3 108 chr3L 68990 3` UTR Lsp1gamma + chr3L 69044 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-136 592 chr3L 88754 88776 chr3L 90667 90696 4 1916 7.0 7.5 7.2 0.5 1942 chr3L 88754 intergenic not near genes chr3L 89725 intergenic not near genes chr3L 90696 intergenic not near genes chr3L_4_85001 chr3L_85001 RAL-136 593 chr3L 402691 402714 chr3L 409743 409767 297 6 7047 3.5 3.0 3.2 1.4 7076 chr3L 402691 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409767 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-136 594 chr3L 421064 421084 chr3L 421144 421180 6 89 9.0 10.0 9.5 0.6 116 chr3L 421064 intergenic not near genes chr3L 421122 intergenic not near genes chr3L 421180 intergenic not near genes chr3L_6_420001 chr3L_420001 RAL-136 595 chr3L 459978 459987 chr3L 460044 460053 4 65 9.5 7.0 8.2 0.4 75 chr3L 459978 intron klar - chr3L 460016 intron klar - chr3L 460053 intron klar - chr3L_4_460001 chr3L_460001 RAL-136 596 chr3L 467593 467625 chr3L 467670 467702 6 74 9.0 8.0 8.5 0.6 109 chr3L 467593 intron klar - chr3L 467648 intron klar - chr3L 467702 intron klar - chr3L_6_465001 chr3L_465001 RAL-136 597 chr3L 514277 514306 chr3L 514354 514371 5 75 8.5 9.0 8.8 0.5 94 chr3L 514277 intron klar - chr3L 514324 intron klar - chr3L 514371 intron klar - chr3L_5_510001 chr3L_510001 RAL-136 598 chr3L 925183 925210 chr3L 932600 932632 mdg1 11 7423 1.0 5.0 3.0 2.8 7449 chr3L 925183 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-136 599 chr3L 933876 933940 chr3L 934009 934040 9 114 2.0 4.0 3.0 2.2 164 chr3L 933876 intron Glut1 + chr3L 933958 intron Glut1 + chr3L 934040 intron Glut1 + chr3L_9_930001 chr3L_930001 RAL-136 600 chr3L 939770 939794 chr3L 940891 940912 jockey 5 1120 5.0 2.5 3.8 1.0 1142 chr3L 939770 intron Glut1 + chr3L 940341 intron Glut1 + chr3L 940912 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-136 601 chr3L 1008502 1008532 chr3L 1008578 1008599 5 74 0.0 1.5 0.8 2.8 97 chr3L 1008502 intron trio - chr3L 1008550 intron trio - chr3L 1008599 intron trio - chr3L_5_1005001 chr3L_1005001 RAL-136 602 chr3L 1045554 1045582 chr3L 1045652 1045681 8 98 9.0 12.5 10.8 0.7 127 chr3L 1045554 intron bab1 - chr3L 1045618 intron bab1 - chr3L 1045681 intron bab1 - chr3L_8_1045001 chr3L_1045001 RAL-136 603 chr3L 1095035 1095049 chr3L 1095102 1095124 7 68 2.5 2.5 2.5 2.0 89 chr3L 1095035 intron bab1 - chr3L 1095080 intron bab1 - chr3L 1095124 intron bab1 - chr3L_7_1095001 chr3L_1095001 RAL-136 604 chr3L 1109634 1109661 chr3L 1109722 1109749 9 84 9.0 4.0 6.5 1.2 115 chr3L 1109634 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109749 intergenic not near genes chr3L_9_1105001 chr3L_1105001 RAL-136 605 chr3L 1154133 1154162 chr3L 1163283 1163311 roo 4 9149 4.5 1.5 3.0 1.0 9178 chr3L 1154133 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163311 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-136 606 chr3L 1219599 1219624 chr3L 1227332 1227357 412 11 7732 3.0 4.0 3.5 2.4 7758 chr3L 1219599 intron mwh + chr3L 1223478 intron mwh + chr3L 1227357 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-136 607 chr3L 1310981 1311009 chr3L 1315852 1315872 4 4867 18.5 21.5 20.0 0.2 4891 chr3L 1310981 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315872 exon CG9153 + chr3L_4_1310001 chr3L_1310001 RAL-136 608 chr3L 1347159 1347179 chr3L 1347243 1347243 4 80 8.0 10.5 9.2 0.4 84 chr3L 1347159 intron Ptp61F - chr3L 1347201 intron Ptp61F - chr3L 1347243 intron Ptp61F - chr3L_4_1345001 chr3L_1345001 RAL-136 609 chr3L 1506012 1506031 chr3L 1513598 1513624 17.6 7 7594 0.5 4.0 2.2 2.2 7612 chr3L 1506012 intron,intron Psa +,cue - chr3L 1509818 intron,intron Psa +,cue - chr3L 1513624 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-136 610 chr3L 1581155 1581182 chr3L 1581489 1581503 11 330 6.5 16.0 11.2 0.9 348 chr3L 1581155 intron CG13917 + chr3L 1581329 intron CG13917 + chr3L 1581503 intron CG13917 + chr3L_11_1580001 chr3L_1580001 RAL-136 611 chr3L 1583082 1583108 chr3L 1583180 1583202 4 95 3.0 3.5 3.2 1.0 120 chr3L 1583082 intron CG13917 + chr3L 1583142 intron CG13917 + chr3L 1583202 intron CG13917 + chr3L_4_1580001 chr3L_1580001 RAL-136 612 chr3L 1682890 1682928 chr3L 1683254 1683277 8 357 12.0 1.0 6.5 1.1 387 chr3L 1682890 intron CG7991 + chr3L 1683084 intron CG7991 + chr3L 1683277 intron CG7991 + chr3L_8_1680001 chr3L_1680001 RAL-136 613 chr3L 2000611 2000624 chr3L 2000685 2000705 6 88 0.0 2.0 1.0 3.0 94 chr3L 2000611 intergenic not near genes chr3L 2000658 intergenic not near genes chr3L 2000705 intergenic not near genes chr3L_6_2000001 chr3L_2000001 RAL-136 614 chr3L 2218476 2218507 chr3L 2218552 2218583 4 71 9.0 8.0 8.5 0.4 107 chr3L 2218476 intergenic not near genes chr3L 2218530 intergenic not near genes chr3L 2218583 intergenic not near genes chr3L_4_2215001 chr3L_2215001 RAL-136 615 chr3L 2277985 2278010 chr3L 2278181 2278199 7 194 1.0 2.5 1.8 2.5 214 chr3L 2277985 3` UTR yellow-g2 + chr3L 2278092 intergenic yellow-g2 + chr3L 2278199 intergenic yellow-g2 + chr3L_7_2275001 chr3L_2275001 RAL-136 616 chr3L 2310535 2310568 chr3L 2310657 2310689 7 120 9.5 5.0 7.2 0.9 154 chr3L 2310535 intergenic not near genes chr3L 2310612 intergenic not near genes chr3L 2310689 intergenic not near genes chr3L_7_2310001 chr3L_2310001 RAL-136 617 chr3L 2351603 2351613 chr3L 2351686 2351695 4 82 3.0 2.5 2.8 1.1 92 chr3L 2351603 intergenic not near genes chr3L 2351649 intergenic not near genes chr3L 2351695 intergenic not near genes chr3L_4_2350001 chr3L_2350001 RAL-136 618 chr3L 2382707 2382734 chr3L 2382788 2382816 5 81 7.0 9.0 8.0 0.6 109 chr3L 2382707 intergenic not near genes chr3L 2382762 intergenic not near genes chr3L 2382816 intergenic not near genes chr3L_5_2380001 chr3L_2380001 RAL-136 619 chr3L 2447515 2447537 chr3L 2456671 2456693 roo 5 9155 3.0 6.0 4.5 0.9 9178 chr3L 2447515 intron CG45186 + chr3L 2452104 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_5_2450001 chr3L_2450001 RAL-136 620 chr3L 2517205 2517236 chr3L 2517285 2517311 6 79 7.5 9.5 8.5 0.6 106 chr3L 2517205 intron,5` UTR Spn -,CR45170 + chr3L 2517258 intron,5` UTR Spn -,CR45170 + chr3L 2517311 intron,intron Spn -,CR45170 + chr3L_6_2515001 chr3L_2515001 RAL-136 621 chr3L 2707934 2707960 chr3L 2708021 2708029 8 84 6.5 13.0 9.8 0.7 95 chr3L 2707934 intron Fife - chr3L 2707982 intron Fife - chr3L 2708029 intron Fife - chr3L_8_2705001 chr3L_2705001 RAL-136 622 chr3L 2740239 2740251 chr3L 2740348 2740360 4 109 2.0 6.0 4.0 0.8 121 chr3L 2740239 intron Mrtf - chr3L 2740300 intron Mrtf - chr3L 2740360 intron Mrtf - chr3L_4_2740001 chr3L_2740001 RAL-136 623 chr3L 2795728 2795744 chr3L 2795851 2795867 4 123 1.5 2.5 2.0 1.3 139 chr3L 2795728 intron CG43444 - chr3L 2795798 intron CG43444 - chr3L 2795867 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-136 624 chr3L 2927843 2927869 chr3L 2936114 2936127 Tirant 6 8268 3.0 1.5 2.2 1.9 8284 chr3L 2927843 intron Shab + chr3L 2931985 intron Shab + chr3L 2936127 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-136 625 chr3L 2992892 2992904 chr3L 2992976 2992983 4 82 4.5 5.0 4.8 0.7 91 chr3L 2992892 intergenic not near genes chr3L 2992938 intergenic not near genes chr3L 2992983 intergenic not near genes chr3L_4_2990001 chr3L_2990001 RAL-136 626 chr3L 3167465 3167490 chr3L 3167561 3167592 6 99 4.0 3.5 3.8 1.2 127 chr3L 3167465 intron CG32280 + chr3L 3167528 intron CG32280 + chr3L 3167592 intron CG32280 + chr3L_6_3165001 chr3L_3165001 RAL-136 627 chr3L 3244035 3244058 chr3L 3244289 3244311 4 253 9.5 5.5 7.5 0.5 276 chr3L 3244035 exon CG12078 - chr3L 3244173 5` UTR CG12078 - chr3L 3244311 intergenic CG12078 - chr3L_4_3240001 chr3L_3240001 RAL-136 628 chr3L 3281458 3281475 chr3L 3281945 3281958 Doc 6 491 0.5 7.5 4.0 1.2 500 chr3L 3281458 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281958 intron CG12017 + chr3L_6_3280001 chr3L_3280001 RAL-136 629 chr3L 3436288 3436315 chr3L 3436367 3436393 7 75 2.5 2.5 2.5 2.0 105 chr3L 3436288 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436393 intron eIF5B - chr3L_7_3435001 chr3L_3435001 RAL-136 630 chr3L 3449334 3449352 chr3L 3449414 3449433 4 76 1.5 4.0 2.8 1.1 99 chr3L 3449334 intron eIF5B - chr3L 3449384 intron eIF5B - chr3L 3449433 intron eIF5B - chr3L_4_3445001 chr3L_3445001 RAL-136 631 chr3L 3475079 3475113 chr3L 3475523 3475557 jockey 11 444 2.5 5.0 3.8 2.3 478 chr3L 3475079 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-136 632 chr3L 3573169 3573191 chr3L 3573251 3573271 5 75 6.5 6.0 6.2 0.7 102 chr3L 3573169 intron Eip63E + chr3L 3573220 intron Eip63E + chr3L 3573271 intron Eip63E + chr3L_5_3570001 chr3L_3570001 RAL-136 633 chr3L 3601298 3601331 chr3L 3606608 3606639 copia 13 5307 3.0 1.5 2.2 4.1 5341 chr3L 3601298 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_13_3600001 chr3L_3600001 RAL-136 634 chr3L 3853609 3853637 chr3L 3853699 3853728 6 89 7.0 3.0 5.0 1.0 119 chr3L 3853609 intron Awh + chr3L 3853668 intron Awh + chr3L 3853728 intron Awh + chr3L_6_3850001 chr3L_3850001 RAL-136 635 chr3L 3875645 3875673 chr3L 3875729 3875757 6 84 7.5 7.5 7.5 0.7 112 chr3L 3875645 intergenic not near genes chr3L 3875701 intergenic not near genes chr3L 3875757 intergenic not near genes chr3L_6_3875001 chr3L_3875001 RAL-136 636 chr3L 3960211 3960233 chr3L 3960463 3960480 4 248 7.5 11.5 9.5 0.4 269 chr3L 3960211 intron CG12605 - chr3L 3960346 intron CG12605 - chr3L 3960480 intron CG12605 - chr3L_4_3960001 chr3L_3960001 RAL-136 637 chr3L 4098391 4098414 chr3L 4098589 4098618 7 199 6.0 11.0 8.5 0.7 227 chr3L 4098391 intron CG14995 - chr3L 4098504 intron CG14995 - chr3L 4098618 intron CG14995 - chr3L_7_4095001 chr3L_4095001 RAL-136 638 chr3L 4328738 4328765 chr3L 4336237 4336239 412 4 7488 1.5 1.0 1.2 1.8 7501 chr3L 4328738 intron Cip4 - chr3L 4332488 intron Cip4 - chr3L 4336239 intron Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-136 639 chr3L 4342410 4342432 chr3L 4342488 4342506 5 77 8.0 6.0 7.0 0.6 96 chr3L 4342410 intron Cip4 - chr3L 4342458 intron Cip4 - chr3L 4342506 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-136 640 chr3L 4392308 4392334 chr3L 4392620 4392644 5 311 3.5 6.5 5.0 0.8 336 chr3L 4392308 intron slow + chr3L 4392476 intron slow + chr3L 4392644 intron slow + chr3L_5_4390001 chr3L_4390001 RAL-136 641 chr3L 4477581 4477590 chr3L 4478159 4478181 4 580 13.5 15.5 14.5 0.3 600 chr3L 4477581 intergenic not near genes chr3L 4477881 intergenic not near genes chr3L 4478181 intergenic not near genes chr3L_4_4475001 chr3L_4475001 RAL-136 642 chr3L 4519427 4519447 chr3L 4519493 4519516 5 73 8.0 10.0 9.0 0.5 89 chr3L 4519427 intron Tie - chr3L 4519472 intron Tie - chr3L 4519516 intron Tie - chr3L_5_4515001 chr3L_4515001 RAL-136 643 chr3L 4638774 4638787 chr3L 4638874 4638877 4 98 0.5 5.0 2.8 1.1 103 chr3L 4638774 intron axo - chr3L 4638826 intron axo - chr3L 4638877 intron axo - chr3L_4_4635001 chr3L_4635001 RAL-136 644 chr3L 4652578 4652595 chr3L 4652661 4652678 4 82 8.5 9.5 9.0 0.4 100 chr3L 4652578 intron axo - chr3L 4652628 intron axo - chr3L 4652678 intron axo - chr3L_4_4650001 chr3L_4650001 RAL-136 645 chr3L 4654190 4654222 chr3L 4654272 4654304 6 82 11.0 13.5 12.2 0.5 114 chr3L 4654190 intron axo - chr3L 4654247 intron axo - chr3L 4654304 intron axo - chr3L_6_4650001 chr3L_4650001 RAL-136 646 chr3L 4707350 4707366 chr3L 4707792 4707810 4 444 11.0 2.0 6.5 0.5 460 chr3L 4707350 intron RhoGEF64C + chr3L 4707580 intron RhoGEF64C + chr3L 4707810 intron RhoGEF64C + chr3L_4_4705001 chr3L_4705001 RAL-136 647 chr3L 4797634 4797646 chr3L 4797702 4797715 4 73 8.0 5.0 6.5 0.5 81 chr3L 4797634 intergenic not near genes chr3L 4797674 intergenic not near genes chr3L 4797715 intergenic not near genes chr3L_4_4795001 chr3L_4795001 RAL-136 648 chr3L 4858315 4858337 chr3L 4858392 4858396 4 73 11.0 8.5 9.8 0.4 81 chr3L 4858315 intergenic not near genes chr3L 4858356 intergenic not near genes chr3L 4858396 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-136 649 chr3L 4862100 4862136 chr3L 4862182 4862210 4 77 5.5 7.5 6.5 0.5 110 chr3L 4862100 intron CG17150 + chr3L 4862155 intron CG17150 + chr3L 4862210 intron CG17150 + chr3L_4_4860001 chr3L_4860001 RAL-136 650 chr3L 4901128 4901159 chr3L 4907316 4907340 diver 8 6188 3.0 1.5 2.2 2.5 6212 chr3L 4901128 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907340 intergenic not near genes chr3L_8_4900001 chr3L_4900001 RAL-136 651 chr3L 4907978 4907991 chr3L 4908054 4908058 4 73 6.0 7.5 6.8 0.5 80 chr3L 4907978 intergenic not near genes chr3L 4908018 intergenic not near genes chr3L 4908058 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-136 652 chr3L 5034171 5034192 chr3L 5043317 5043344 roo 6 9150 1.0 1.0 1.0 3.0 9173 chr3L 5034171 intron Con - chr3L 5038758 intron Con - chr3L 5043344 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-136 653 chr3L 5299168 5299183 chr3L 5306599 5306618 Quasimodo 4 7430 0.5 1.0 0.8 2.2 7450 chr3L 5299168 intergenic not near genes chr3L 5302893 intergenic not near genes chr3L 5306618 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-136 654 chr3L 5388203 5388222 chr3L 5388527 5388541 4 322 8.5 5.0 6.8 0.5 338 chr3L 5388203 intergenic not near genes chr3L 5388372 intergenic not near genes chr3L 5388541 intergenic not near genes chr3L_4_5385001 chr3L_5385001 RAL-136 655 chr3L 5910040 5910063 chr3L 5910276 5910304 pogo 4 240 1.0 2.5 1.8 1.4 264 chr3L 5910040 intron CG13288 + chr3L 5910172 intron CG13288 + chr3L 5910304 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-136 656 chr3L 5926313 5926350 chr3L 5926503 5926540 BS 12 182 2.0 4.5 3.2 2.9 227 chr3L 5926313 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926540 intron Vap-33B + chr3L_12_5925001 chr3L_5925001 RAL-136 657 chr3L 5939566 5939587 chr3L 5939702 5939725 7 135 4.5 9.5 7.0 0.9 159 chr3L 5939566 intron CG33993 - chr3L 5939646 intron CG33993 - chr3L 5939725 intron CG33993 - chr3L_7_5935001 chr3L_5935001 RAL-136 658 chr3L 6001682 6001698 chr3L 6004378 6004395 jockey 7 2698 3.5 0.0 1.8 2.5 2713 chr3L 6001682 intron PVRAP + chr3L 6003038 intron PVRAP + chr3L 6004395 intron PVRAP + chr3L_7_6000001 chr3L_6000001 RAL-136 659 chr3L 6052653 6052667 chr3L 6052738 6052738 4 81 4.0 4.5 4.2 0.8 85 chr3L 6052653 exon Jon65Aii + chr3L 6052696 intron Jon65Aii + chr3L 6052738 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-136 660 chr3L 6220913 6220947 chr3L 6230064 6230079 roo 12 9147 2.5 3.5 3.0 3.0 9166 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225496 intergenic not near genes chr3L 6230079 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-136 661 chr3L 6299919 6299945 chr3L 6301188 6301214 5 1265 7.5 8.5 8.0 0.6 1295 chr3L 6299919 intergenic not near genes chr3L 6300566 intergenic not near genes chr3L 6301214 intergenic not near genes chr3L_5_6300001 chr3L_6300001 RAL-136 662 chr3L 6335012 6335041 chr3L 6335479 6335510 297 4 470 2.0 1.0 1.5 1.6 498 chr3L 6335012 intron CG13300 - chr3L 6335261 intron CG13300 - chr3L 6335510 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-136 663 chr3L 6358628 6358652 chr3L 6358705 6358729 10 76 6.5 8.0 7.2 1.2 101 chr3L 6358628 intergenic not near genes chr3L 6358678 intergenic not near genes chr3L 6358729 intergenic not near genes chr3L_10_6355001 chr3L_6355001 RAL-136 664 chr3L 6668974 6668995 chr3L 6669046 6669075 4 78 1.5 0.5 1.0 2.0 101 chr3L 6668974 intergenic not near genes chr3L 6669024 intergenic not near genes chr3L 6669075 intergenic not near genes chr3L_4_6665001 chr3L_6665001 RAL-136 665 chr3L 6815342 6815363 chr3L 6815729 6815751 4 388 3.0 6.5 4.8 0.7 409 chr3L 6815342 intergenic not near genes chr3L 6815546 intergenic not near genes chr3L 6815751 intergenic not near genes chr3L_4_6815001 chr3L_6815001 RAL-136 666 chr3L 7150875 7150898 chr3L 7150951 7150965 5 73 7.5 7.0 7.2 0.6 90 chr3L 7150875 intron corn - chr3L 7150920 intron corn - chr3L 7150965 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-136 667 chr3L 7300968 7300982 chr3L 7301057 7301074 4 90 5.5 4.5 5.0 0.7 106 chr3L 7300968 intron unc-13-4A - chr3L 7301021 intron unc-13-4A - chr3L 7301074 intron unc-13-4A - chr3L_4_7300001 chr3L_7300001 RAL-136 668 chr3L 7358296 7358326 chr3L 7359579 7359599 14 1277 18.5 12.5 15.5 0.8 1303 chr3L 7358296 exon pst - chr3L 7358948 exon pst - chr3L 7359599 exon pst - chr3L_14_7355001 chr3L_7355001 RAL-136 669 chr3L 7377322 7377348 chr3L 7380425 7380451 297 4 3104 1.5 1.5 1.5 1.6 3129 chr3L 7377322 intron SMSr - chr3L 7378886 intron SMSr - chr3L 7380451 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-136 670 chr3L 7450696 7450717 chr3L 7450770 7450795 4 74 1.5 1.5 1.5 1.6 99 chr3L 7450696 intron CG42458 + chr3L 7450746 intron CG42458 + chr3L 7450795 intron CG42458 + chr3L_4_7450001 chr3L_7450001 RAL-136 671 chr3L 7464153 7464185 chr3L 7464297 7464329 9 142 6.5 6.0 6.2 1.2 176 chr3L 7464153 intergenic not near genes chr3L 7464241 intergenic not near genes chr3L 7464329 intergenic not near genes chr3L_9_7460001 chr3L_7460001 RAL-136 672 chr3L 7575122 7575146 chr3L 7575367 7575377 6 236 7.0 10.5 8.8 0.6 255 chr3L 7575122 intergenic not near genes chr3L 7575250 intergenic not near genes chr3L 7575377 intergenic not near genes chr3L_6_7575001 chr3L_7575001 RAL-136 673 chr3L 7597439 7597459 chr3L 7597879 7597900 4 435 7.5 11.0 9.2 0.4 461 chr3L 7597439 intron CG33275 + chr3L 7597670 intron CG33275 + chr3L 7597900 intron CG33275 + chr3L_4_7595001 chr3L_7595001 RAL-136 674 chr3L 7752150 7752179 chr3L 7752253 7752280 5 99 6.5 7.0 6.8 0.6 130 chr3L 7752150 intron CG32373 + chr3L 7752215 intron CG32373 + chr3L 7752280 intron CG32373 + chr3L_5_7750001 chr3L_7750001 RAL-136 675 chr3L 7793718 7793742 chr3L 7800763 7800793 297 11 7049 2.0 1.5 1.8 3.9 7075 chr3L 7793718 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_11_7795001 chr3L_7795001 RAL-136 676 chr3L 7862316 7862330 chr3L 7862392 7862406 4 76 6.0 8.5 7.2 0.5 90 chr3L 7862316 intron Pdp1 - chr3L 7862361 intron Pdp1 - chr3L 7862406 intron Pdp1 - chr3L_4_7860001 chr3L_7860001 RAL-136 677 chr3L 7883745 7883776 chr3L 7883902 7883915 12 153 3.0 0.0 1.5 4.8 170 chr3L 7883745 intron CG32365 + chr3L 7883830 intron CG32365 + chr3L 7883915 intron CG32365 + chr3L_12_7880001 chr3L_7880001 RAL-136 678 chr3L 7886512 7886546 chr3L 7889030 7889054 Stalker4 8 2511 1.5 3.0 2.2 2.5 2542 chr3L 7886512 intron CG32365 + chr3L 7887783 intron CG32365 + chr3L 7889054 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-136 679 chr3L 7902426 7902444 chr3L 7902509 7902525 5 82 8.5 6.0 7.2 0.6 99 chr3L 7902426 intron pbl - chr3L 7902476 intron pbl - chr3L 7902525 intron pbl - chr3L_5_7900001 chr3L_7900001 RAL-136 680 chr3L 7985367 7985395 chr3L 7987693 7987722 NOF 10 2325 2.0 2.0 2.0 3.3 2355 chr3L 7985367 intron nmo + chr3L 7986544 intron nmo + chr3L 7987722 intron nmo + chr3L_10_7985001 chr3L_7985001 RAL-136 681 chr3L 8076580 8076593 chr3L 8076756 8076757 5 173 4.5 4.5 4.5 0.9 177 chr3L 8076580 intron Ect4 + chr3L 8076668 intron Ect4 + chr3L 8076757 intron Ect4 + chr3L_5_8075001 chr3L_8075001 RAL-136 682 chr3L 8295807 8295817 chr3L 8295957 8295961 5 151 5.0 8.0 6.5 0.7 154 chr3L 8295807 intergenic CG7201 - chr3L 8295884 intergenic not near genes chr3L 8295961 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-136 683 chr3L 8498305 8498329 chr3L 8505762 8505794 blood 7 7464 1.5 2.5 2.0 2.3 7489 chr3L 8498305 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505794 intron CG43163 - chr3L_7_8500001 chr3L_8500001 RAL-136 684 chr3L 9003951 9003978 chr3L 9004034 9004045 8 82 2.5 1.5 2.0 2.7 94 chr3L 9003951 intergenic not near genes chr3L 9003998 intergenic not near genes chr3L 9004045 intergenic not near genes chr3L_8_9000001 chr3L_9000001 RAL-136 685 chr3L 9076931 9076960 chr3L 9084486 9084506 412 9 7555 4.0 3.5 3.8 1.9 7575 chr3L 9076931 exon Tequila + chr3L 9080718 intron Tequila + chr3L 9084506 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-136 686 chr3L 9115248 9115264 chr3L 9115329 9115347 5 80 11.0 14.5 12.8 0.4 99 chr3L 9115248 intron bol - chr3L 9115298 intron bol - chr3L 9115347 intron bol - chr3L_5_9115001 chr3L_9115001 RAL-136 687 chr3L 9164705 9164722 chr3L 9166162 9166189 hobo 6 1460 1.5 1.0 1.2 2.7 1484 chr3L 9164705 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166189 intron Rdl - chr3L_6_9165001 chr3L_9165001 RAL-136 688 chr3L 9219241 9219254 chr3L 9219913 9219916 jockey 4 669 7.5 6.0 6.8 0.5 675 chr3L 9219241 intergenic not near genes chr3L 9219578 intergenic not near genes chr3L 9219916 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-136 689 chr3L 9232234 9232256 chr3L 9232655 9232678 4 421 9.0 4.0 6.5 0.5 444 chr3L 9232234 intergenic not near genes chr3L 9232456 intergenic not near genes chr3L 9232678 intergenic not near genes chr3L_4_9230001 chr3L_9230001 RAL-136 690 chr3L 9270633 9270641 chr3L 9278376 9278396 roo 4 7750 2.5 3.0 2.8 1.1 7763 chr3L 9270633 intron GluRIB + chr3L 9274514 intron GluRIB + chr3L 9278396 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-136 691 chr3L 9369334 9369364 chr3L 9369449 9369480 4 116 13.0 10.0 11.5 0.3 146 chr3L 9369334 intron CG4452 + chr3L 9369407 intron CG4452 + chr3L 9369480 intron CG4452 + chr3L_4_9365001 chr3L_9365001 RAL-136 692 chr3L 9501703 9501714 chr3L 9502187 9502200 roo 4 486 3.0 3.0 3.0 1.0 497 chr3L 9501703 intron path - chr3L 9501952 intron path - chr3L 9502200 intron path - chr3L_4_9500001 chr3L_9500001 RAL-136 693 chr3L 9575909 9575946 chr3L 9580987 9581019 jockey 16 5075 4.5 3.0 3.8 3.3 5110 chr3L 9575909 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581019 intron CG42673 + chr3L_16_9575001 chr3L_9575001 RAL-136 694 chr3L 9657973 9657987 chr3L 9658034 9658063 8 74 5.0 7.0 6.0 1.1 90 chr3L 9657973 intron,intron fry -,CG33696 + chr3L 9658018 intron,intron fry -,CG33696 + chr3L 9658063 intron,intron fry -,CG33696 + chr3L_8_9655001 chr3L_9655001 RAL-136 695 chr3L 9675855 9675873 chr3L 9675938 9675944 8 81 15.5 13.0 14.2 0.5 89 chr3L 9675855 intron fry - chr3L 9675900 intron fry - chr3L 9675944 intron fry - chr3L_8_9675001 chr3L_9675001 RAL-136 696 chr3L 9745497 9745516 chr3L 9745583 9745595 5 85 8.5 7.0 7.8 0.6 98 chr3L 9745497 intron CG42268 - chr3L 9745546 intron CG42268 - chr3L 9745595 intron CG42268 - chr3L_5_9745001 chr3L_9745001 RAL-136 697 chr3L 9895360 9895379 chr3L 9895438 9895459 5 78 6.0 7.5 6.8 0.6 99 chr3L 9895360 3` UTR CG6707 - chr3L 9895410 3` UTR CG6707 - chr3L 9895459 3` UTR CG6707 - chr3L_5_9895001 chr3L_9895001 RAL-136 698 chr3L 9918896 9918902 chr3L 9918977 9918995 5 92 3.5 0.0 1.8 1.8 99 chr3L 9918896 intron CG34356 + chr3L 9918946 intron CG34356 + chr3L 9918995 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-136 699 chr3L 9940555 9940579 chr3L 9940687 9940712 7 131 8.0 6.0 7.0 0.9 157 chr3L 9940555 intron CG34356 + chr3L 9940634 intron CG34356 + chr3L 9940712 intron CG34356 + chr3L_7_9940001 chr3L_9940001 RAL-136 700 chr3L 10011605 10011616 chr3L 10011670 10011698 5 76 5.5 3.5 4.5 0.9 93 chr3L 10011605 intron dpr6 + chr3L 10011652 intron dpr6 + chr3L 10011698 intron dpr6 + chr3L_5_10010001 chr3L_10010001 RAL-136 701 chr3L 10191299 10191363 chr3L 10191396 10191452 7 88 3.5 5.0 4.2 1.3 153 chr3L 10191299 intron ect - chr3L 10191376 intron ect - chr3L 10191452 intron ect - chr3L_7_10190001 chr3L_10190001 RAL-136 702 chr3L 10206219 10206225 chr3L 10206298 10206306 4 80 6.0 3.0 4.5 0.7 87 chr3L 10206219 5` UTR CR44538 + chr3L 10206262 5` UTR CR44538 + chr3L 10206306 5` UTR CR44538 + chr3L_4_10205001 chr3L_10205001 RAL-136 703 chr3L 10214745 10214826 chr3L 10214817 10214928 5 91 0.0 0.0 0.0 5.0 183 chr3L 10214745 intergenic not near genes chr3L 10214836 intergenic not near genes chr3L 10214928 intergenic not near genes chr3L_5_10210001 chr3L_10210001 RAL-136 704 chr3L 10219237 10219265 chr3L 10219334 10219343 6 90 11.5 6.5 9.0 0.6 106 chr3L 10219237 exon CG32055 - chr3L 10219290 exon CG32055 - chr3L 10219343 exon CG32055 - chr3L_6_10215001 chr3L_10215001 RAL-136 705 chr3L 10308742 10308776 chr3L 10308819 10308853 11 75 1.5 3.5 2.5 3.1 111 chr3L 10308742 intergenic not near genes chr3L 10308798 intergenic not near genes chr3L 10308853 intergenic not near genes chr3L_11_10305001 chr3L_10305001 RAL-136 706 chr3L 10395562 10395568 chr3L 10395694 10395711 4 141 8.5 7.0 7.8 0.5 149 chr3L 10395562 intergenic not near genes chr3L 10395636 intergenic not near genes chr3L 10395711 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-136 707 chr3L 10414963 10414977 chr3L 10417315 10417346 Doc 6 2355 2.0 1.0 1.5 2.4 2383 chr3L 10414963 intergenic CG12362 + chr3L 10416154 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-136 708 chr3L 10417584 10417605 chr3L 10417646 10417675 7 70 3.0 3.5 3.2 1.7 91 chr3L 10417584 intergenic not near genes chr3L 10417630 intergenic not near genes chr3L 10417675 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-136 709 chr3L 10476581 10476597 chr3L 10476668 10476670 5 83 5.5 8.0 6.8 0.6 89 chr3L 10476581 intergenic not near genes chr3L 10476626 intergenic not near genes chr3L 10476670 intergenic not near genes chr3L_5_10475001 chr3L_10475001 RAL-136 710 chr3L 10600458 10600468 chr3L 10600538 10600550 7 81 0.5 2.5 1.5 2.8 92 chr3L 10600458 intergenic not near genes chr3L 10600504 intergenic not near genes chr3L 10600550 intergenic not near genes chr3L_7_10600001 chr3L_10600001 RAL-136 711 chr3L 10602651 10602658 chr3L 10602736 10602743 4 84 6.0 5.0 5.5 0.6 92 chr3L 10602651 intergenic not near genes chr3L 10602697 intergenic not near genes chr3L 10602743 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-136 712 chr3L 10658109 10658209 chr3L 10658174 10658321 4 105 1.0 0.5 0.8 2.2 212 chr3L 10658109 intron CG32066 - chr3L 10658215 intron CG32066 - chr3L 10658321 intron CG32066 - chr3L_4_10655001 chr3L_10655001 RAL-136 713 chr3L 10658969 10658997 chr3L 10659250 10659267 4 277 5.0 3.0 4.0 0.8 298 chr3L 10658969 intron CG32066 - chr3L 10659118 intron CG32066 - chr3L 10659267 intron CG32066 - chr3L_4_10655001 chr3L_10655001 RAL-136 714 chr3L 10678724 10678753 chr3L 10678807 10678828 6 80 1.5 3.5 2.5 1.7 104 chr3L 10678724 intron simj + chr3L 10678776 intron simj + chr3L 10678828 intron simj + chr3L_6_10675001 chr3L_10675001 RAL-136 715 chr3L 10727450 10727466 chr3L 10727944 10727967 8 489 15.0 6.5 10.8 0.7 517 chr3L 10727450 intergenic not near genes chr3L 10727708 intergenic not near genes chr3L 10727967 intergenic not near genes chr3L_8_10725001 chr3L_10725001 RAL-136 716 chr3L 11083513 11083537 chr3L 11083611 11083635 5 98 0.5 1.0 0.8 2.8 122 chr3L 11083513 intron JIL-1 - chr3L 11083574 intron JIL-1 - chr3L 11083635 intron JIL-1 - chr3L_5_11080001 chr3L_11080001 RAL-136 717 chr3L 11087065 11087086 chr3L 11088852 11088867 S-element 9 1787 0.0 6.5 3.2 2.1 1802 chr3L 11087065 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088867 intron JIL-1 - chr3L_9_11085001 chr3L_11085001 RAL-136 718 chr3L 11105294 11105327 chr3L 11107005 11107032 X-element 6 1710 2.0 1.5 1.8 2.1 1738 chr3L 11105294 intergenic not near genes chr3L 11106163 intergenic not near genes chr3L 11107032 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-136 719 chr3L 11264468 11264496 chr3L 11271420 11271448 17.6 5 6948 2.5 3.0 2.8 1.3 6980 chr3L 11264468 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271448 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-136 720 chr3L 11290627 11290654 chr3L 11290950 11290975 4 322 5.0 2.5 3.8 0.8 348 chr3L 11290627 intron CG6175 - chr3L 11290801 intron CG6175 - chr3L 11290975 intron CG6175 - chr3L_4_11290001 chr3L_11290001 RAL-136 721 chr3L 11329704 11329727 chr3L 11332902 11332929 jockey 6 3196 6.0 5.0 5.5 0.9 3225 chr3L 11329704 intergenic not near genes chr3L 11331316 intergenic not near genes chr3L 11332929 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-136 722 chr3L 11548854 11548880 chr3L 11548935 11548967 8 84 10.0 9.5 9.8 0.7 113 chr3L 11548854 intron Mob2 - chr3L 11548910 intron Mob2 - chr3L 11548967 intron Mob2 - chr3L_8_11545001 chr3L_11545001 RAL-136 723 chr3L 11564790 11564812 chr3L 11572404 11572414 412 5 7611 2.5 3.0 2.8 1.3 7624 chr3L 11564790 exon CG33267 + chr3L 11568602 intron CG33267 + chr3L 11572414 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-136 724 chr3L 11579557 11579585 chr3L 11579663 11579689 8 105 1.0 1.0 1.0 4.0 132 chr3L 11579557 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_8_11575001 chr3L_11575001 RAL-136 725 chr3L 11633626 11633634 chr3L 11633694 11633713 4 74 5.5 4.0 4.8 0.7 87 chr3L 11633626 intron CG32091 + chr3L 11633670 intron CG32091 + chr3L 11633713 intron CG32091 + chr3L_4_11630001 chr3L_11630001 RAL-136 726 chr3L 11723088 11723115 chr3L 11727878 11727900 Doc 8 4791 1.0 0.0 0.5 5.3 4812 chr3L 11723088 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727900 3` UTR Bmcp + chr3L_8_11725001 chr3L_11725001 RAL-136 727 chr3L 11811455 11811477 chr3L 11811533 11811555 5 77 5.0 9.5 7.2 0.6 100 chr3L 11811455 intron CG42255 - chr3L 11811505 intron CG42255 - chr3L 11811555 exon CG42255 - chr3L_5_11810001 chr3L_11810001 RAL-136 728 chr3L 11849345 11849357 chr3L 11849442 11849446 4 94 5.0 7.5 6.2 0.6 101 chr3L 11849345 intergenic not near genes chr3L 11849396 intergenic not near genes chr3L 11849446 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-136 729 chr3L 11864559 11864583 chr3L 11865852 11865878 pogo 6 1290 5.5 3.5 4.5 1.1 1319 chr3L 11864559 intron CG44837 - chr3L 11865218 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-136 730 chr3L 12013914 12013932 chr3L 12014005 12014023 6 88 3.5 3.0 3.2 1.4 109 chr3L 12013914 intron rols - chr3L 12013968 intron rols - chr3L 12014023 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-136 731 chr3L 12234338 12234347 chr3L 12234414 12234435 4 84 13.5 10.0 11.8 0.3 97 chr3L 12234338 intron app - chr3L 12234386 intron app - chr3L 12234435 intron app - chr3L_4_12230001 chr3L_12230001 RAL-136 732 chr3L 12241674 12241695 chr3L 12241755 12241776 4 76 11.5 12.5 12.0 0.3 102 chr3L 12241674 intron app - chr3L 12241725 intron app - chr3L 12241776 intron app - chr3L_4_12240001 chr3L_12240001 RAL-136 733 chr3L 12369528 12369562 chr3L 12369702 12369735 4 174 2.0 0.0 1.0 2.0 207 chr3L 12369528 intron Ncc69 - chr3L 12369632 intron Ncc69 - chr3L 12369735 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-136 734 chr3L 12392453 12392466 chr3L 12392572 12392585 4 118 6.0 4.5 5.2 0.6 132 chr3L 12392453 intergenic not near genes chr3L 12392519 intergenic not near genes chr3L 12392585 intergenic not near genes chr3L_4_12390001 chr3L_12390001 RAL-136 735 chr3L 12411040 12411046 chr3L 12411144 12411156 4 107 3.5 5.0 4.2 0.8 116 chr3L 12411040 intron CG32103 - chr3L 12411098 intron CG32103 - chr3L 12411156 intron CG32103 - chr3L_4_12410001 chr3L_12410001 RAL-136 736 chr3L 12566819 12566847 chr3L 12566923 12566952 5 98 8.0 9.5 8.8 0.5 133 chr3L 12566819 intron sowah - chr3L 12566886 intron sowah - chr3L 12566952 intron sowah - chr3L_5_12565001 chr3L_12565001 RAL-136 737 chr3L 12874925 12874947 chr3L 12877217 12877239 jockey 5 2292 2.0 2.0 2.0 1.7 2314 chr3L 12874925 intergenic not near genes chr3L 12876082 intergenic not near genes chr3L 12877239 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-136 738 chr3L 12919295 12919309 chr3L 12924744 12924778 Rt1c 6 5463 3.0 0.5 1.8 2.1 5483 chr3L 12919295 intergenic not near genes chr3L 12922036 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-136 739 chr3L 12957794 12957803 chr3L 12962276 12962285 copia 4 4482 3.5 2.5 3.0 1.0 4491 chr3L 12957794 intergenic not near genes chr3L 12960040 intergenic not near genes chr3L 12962285 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-136 740 chr3L 12957808 12957819 chr3L 12962274 12962291 copia 4 4476 3.0 1.5 2.2 1.2 4483 chr3L 12957808 intergenic not near genes chr3L 12960050 intergenic not near genes chr3L 12962291 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-136 741 chr3L 12962677 12962698 chr3L 12962793 12962805 4 113 11.0 12.0 11.5 0.3 128 chr3L 12962677 intergenic not near genes chr3L 12962741 intergenic not near genes chr3L 12962805 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-136 742 chr3L 13267287 13267300 chr3L 13267400 13267412 4 113 5.0 0.5 2.8 1.1 125 chr3L 13267287 intron caps + chr3L 13267350 intron caps + chr3L 13267412 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-136 743 chr3L 13296520 13296542 chr3L 13296611 13296633 8 87 4.5 2.5 3.5 1.8 113 chr3L 13296520 intergenic Sfp70A4 -,CR45253 + chr3L 13296576 3` UTR Sfp70A4 - chr3L 13296633 3` UTR Sfp70A4 - chr3L_8_13295001 chr3L_13295001 RAL-136 744 chr3L 13361974 13361985 chr3L 13362068 13362079 4 93 10.5 5.0 7.8 0.5 105 chr3L 13361974 intergenic not near genes chr3L 13362026 intergenic not near genes chr3L 13362079 intergenic not near genes chr3L_4_13360001 chr3L_13360001 RAL-136 745 chr3L 13374262 13374273 chr3L 13374338 13374361 4 86 1.0 2.0 1.5 1.6 99 chr3L 13374262 intergenic not near genes chr3L 13374312 intergenic not near genes chr3L 13374361 intergenic not near genes chr3L_4_13370001 chr3L_13370001 RAL-136 746 chr3L 13525162 13525188 chr3L 13532958 13532983 roo 12 7793 6.0 3.5 4.8 2.1 7821 chr3L 13525162 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_12_13525001 chr3L_13525001 RAL-136 747 chr3L 13701571 13701583 chr3L 13701677 13701688 4 113 6.0 3.5 4.8 0.7 117 chr3L 13701571 intron bru-3 - chr3L 13701630 intron bru-3 - chr3L 13701688 intron bru-3 - chr3L_4_13700001 chr3L_13700001 RAL-136 748 chr3L 13740036 13740052 chr3L 13740127 13740144 5 92 2.0 3.5 2.8 1.3 108 chr3L 13740036 intron bru-3 - chr3L 13740090 intron bru-3 - chr3L 13740144 intron bru-3 - chr3L_5_13740001 chr3L_13740001 RAL-136 749 chr3L 13804558 13804569 chr3L 13822831 13822836 roo 4 18277 2.0 0.0 1.0 2.0 18278 chr3L 13804558 intergenic not near genes chr3L 13813697 intergenic not near genes chr3L 13822836 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-136 750 chr3L 14061673 14061688 chr3L 14061755 14061771 4 85 3.0 2.0 2.5 1.1 98 chr3L 14061673 intron CG32138 + chr3L 14061722 intron CG32138 + chr3L 14061771 intron CG32138 + chr3L_4_14060001 chr3L_14060001 RAL-136 751 chr3L 14245569 14245583 chr3L 14245663 14245677 1360 6 94 7.0 4.5 5.8 0.9 108 chr3L 14245569 3` UTR CR44561 - chr3L 14245623 3` UTR CR44561 - chr3L 14245677 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-136 752 chr3L 14245586 14245591 chr3L 14245659 14245664 1360 4 83 6.0 3.5 4.8 0.7 78 chr3L 14245586 3` UTR CR44561 - chr3L 14245625 3` UTR CR44561 - chr3L 14245664 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-136 753 chr3L 14234959 14234986 chr3L 14249423 14249447 4 14467 5.0 12.0 8.5 0.4 14488 chr3L 14234959 intergenic CG34244 -,CG7924 + chr3L 14242203 intergenic not near genes chr3L 14249447 intergenic not near genes chr3L_4_14240001 chr3L_14240001 RAL-136 754 chr3L 14295983 14296010 chr3L 14296467 14296496 roo 7 485 1.5 2.5 2.0 2.3 513 chr3L 14295983 intron fz + chr3L 14296240 intron fz + chr3L 14296496 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-136 755 chr3L 14356537 14356546 chr3L 14356617 14356626 4 80 11.0 11.0 11.0 0.3 89 chr3L 14356537 intron fz + chr3L 14356582 intron fz + chr3L 14356626 intron fz + chr3L_4_14355001 chr3L_14355001 RAL-136 756 chr3L 14439226 14439241 chr3L 14439377 14439403 5 160 3.0 3.0 3.0 1.2 177 chr3L 14439226 intron bbg - chr3L 14439314 intron bbg - chr3L 14439403 intron bbg - chr3L_5_14435001 chr3L_14435001 RAL-136 757 chr3L 14486018 14486044 chr3L 14486099 14486125 7 80 3.0 1.5 2.2 2.2 107 chr3L 14486018 intron bbg - chr3L 14486072 intron bbg - chr3L 14486125 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-136 758 chr3L 14555910 14555938 chr3L 14555992 14556020 5 78 2.5 4.0 3.2 1.2 110 chr3L 14555910 intergenic not near genes chr3L 14555965 intergenic not near genes chr3L 14556020 intergenic not near genes chr3L_5_14555001 chr3L_14555001 RAL-136 759 chr3L 14585607 14585637 chr3L 14585685 14585715 6 76 6.0 5.5 5.8 0.9 108 chr3L 14585607 intron HGTX - chr3L 14585661 intron HGTX - chr3L 14585715 intron HGTX - chr3L_6_14585001 chr3L_14585001 RAL-136 760 chr3L 14706312 14706324 chr3L 14706370 14706396 5 69 10.5 13.0 11.8 0.4 84 chr3L 14706312 intron ome + chr3L 14706354 intron ome + chr3L 14706396 intron ome + chr3L_5_14705001 chr3L_14705001 RAL-136 761 chr3L 14718265 14718290 chr3L 14718354 14718370 5 86 7.0 8.0 7.5 0.6 105 chr3L 14718265 intron ome + chr3L 14718318 intron ome + chr3L 14718370 intron ome + chr3L_5_14715001 chr3L_14715001 RAL-136 762 chr3L 14721204 14721208 chr3L 14723035 14723051 Rt1c 4 1836 4.5 4.5 4.5 0.7 1847 chr3L 14721204 intron ome + chr3L 14722128 intron ome + chr3L 14723051 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-136 763 chr3L 14725617 14725624 chr3L 14728596 14728618 Doc 4 2990 0.5 2.0 1.2 1.8 3001 chr3L 14725617 intron ome + chr3L 14727118 intron ome + chr3L 14728618 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-136 764 chr3L 14995926 14995937 chr3L 14996025 14996038 4 99 4.0 7.5 5.8 0.6 112 chr3L 14995926 intron Zip71B + chr3L 14995982 intron Zip71B + chr3L 14996038 intron Zip71B + chr3L_4_14995001 chr3L_14995001 RAL-136 765 chr3L 15381831 15381843 chr3L 15381917 15381923 4 83 7.5 5.5 6.5 0.5 92 chr3L 15381831 intergenic not near genes chr3L 15381877 intergenic not near genes chr3L 15381923 intergenic not near genes chr3L_4_15380001 chr3L_15380001 RAL-136 766 chr3L 15406049 15406055 chr3L 15406131 15406136 6 82 0.5 6.5 3.5 1.3 87 chr3L 15406049 intergenic not near genes chr3L 15406092 intergenic not near genes chr3L 15406136 intergenic not near genes chr3L_6_15405001 chr3L_15405001 RAL-136 767 chr3L 15423117 15423143 chr3L 15423203 15423211 5 80 2.0 4.0 3.0 1.2 94 chr3L 15423117 intergenic not near genes chr3L 15423164 intergenic not near genes chr3L 15423211 intergenic not near genes chr3L_5_15420001 chr3L_15420001 RAL-136 768 chr3L 15466040 15466132 chr3L 15466122 15466228 5 85 0.0 0.0 0.0 5.0 188 chr3L 15466040 intergenic not near genes chr3L 15466134 intergenic not near genes chr3L 15466228 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-136 769 chr3L 15756881 15756913 chr3L 15756964 15756968 8 78 3.0 1.0 2.0 2.7 87 chr3L 15756881 intergenic not near genes chr3L 15756924 intergenic not near genes chr3L 15756968 intergenic not near genes chr3L_8_15755001 chr3L_15755001 RAL-136 770 chr3L 15824870 15824896 chr3L 15824954 15824976 11 81 12.5 10.0 11.2 0.9 106 chr3L 15824870 intron Dcp2 - chr3L 15824923 intron Dcp2 - chr3L 15824976 intron Dcp2 - chr3L_11_15820001 chr3L_15820001 RAL-136 771 chr3L 15883195 15883209 chr3L 15883485 15883495 5 288 3.0 5.5 4.2 1.0 300 chr3L 15883195 intron pHCl - chr3L 15883345 intron pHCl - chr3L 15883495 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-136 772 chr3L 16102267 16102298 chr3L 16102351 16102362 7 80 11.5 11.0 11.2 0.6 95 chr3L 16102267 exon CG5414 + chr3L 16102314 intron CG5414 + chr3L 16102362 intron CG5414 + chr3L_7_16100001 chr3L_16100001 RAL-136 773 chr3L 16162601 16162613 chr3L 16162679 16162697 4 82 8.0 7.0 7.5 0.5 96 chr3L 16162601 intron CG5151 - chr3L 16162649 intron CG5151 - chr3L 16162697 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-136 774 chr3L 16184109 16184138 chr3L 16188928 16188940 X-element 4 4827 1.5 3.5 2.5 1.1 4831 chr3L 16184109 intergenic not near genes chr3L 16186524 intergenic not near genes chr3L 16188940 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-136 775 chr3L 16385133 16385163 chr3L 16385208 16385238 5 75 6.5 5.5 6.0 0.7 105 chr3L 16385133 intron CG4729 - chr3L 16385186 intron CG4729 - chr3L 16385238 intron CG4729 - chr3L_5_16385001 chr3L_16385001 RAL-136 776 chr3L 16443864 16443874 chr3L 16446194 16446214 Doc 7 2337 2.0 4.5 3.2 1.7 2350 chr3L 16443864 intron,intron CG33158 +,dsx-c73A - chr3L 16445039 intron,intron CG33158 +,dsx-c73A - chr3L 16446214 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-136 777 chr3L 16521826 16521836 chr3L 16521908 16521927 4 85 2.5 6.5 4.5 0.7 101 chr3L 16521826 intron CG43373 - chr3L 16521876 intron CG43373 - chr3L 16521927 intron CG43373 - chr3L_4_16520001 chr3L_16520001 RAL-136 778 chr3L 16616509 16616533 chr3L 16621836 16621860 297 5 5328 1.0 3.5 2.2 1.6 5351 chr3L 16616509 3` UTR Abl - chr3L 16619184 3` UTR Abl - chr3L 16621860 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-136 779 chr3L 16667813 16667831 chr3L 16669970 16669988 4 2156 17.0 10.5 13.8 0.3 2175 chr3L 16667813 5` UTR Galphaf - chr3L 16668900 intergenic not near genes chr3L 16669988 intergenic CR45241 - chr3L_4_16665001 chr3L_16665001 RAL-136 780 chr3L 16668750 16668771 chr3L 16668829 16668858 6 84 19.5 15.0 17.2 0.3 108 chr3L 16668750 intergenic not near genes chr3L 16668804 intergenic not near genes chr3L 16668858 intergenic not near genes chr3L_6_16665001 chr3L_16665001 RAL-136 781 chr3L 16667704 16667735 chr3L 16670427 16670459 7 2723 17.5 29.0 23.2 0.3 2755 chr3L 16667704 5` UTR Galphaf - chr3L 16669082 intergenic not near genes chr3L 16670459 3` UTR CR45241 - chr3L_7_16665001 chr3L_16665001 RAL-136 782 chr3L 16699652 16699684 chr3L 16699735 16699754 4 78 11.5 11.0 11.2 0.3 102 chr3L 16699652 intron,intron Lasp -,CG43954 - chr3L 16699703 intron,intron Lasp -,CG43954 - chr3L 16699754 intron,intron Lasp -,CG43954 - chr3L_4_16695001 chr3L_16695001 RAL-136 783 chr3L 16749213 16749236 chr3L 16749288 16749297 4 72 5.0 2.0 3.5 0.9 84 chr3L 16749213 intergenic not near genes chr3L 16749255 intergenic not near genes chr3L 16749297 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-136 784 chr3L 16757654 16757665 chr3L 16757742 16757755 4 90 0.5 0.0 0.2 3.3 101 chr3L 16757654 intergenic not near genes chr3L 16757704 intergenic not near genes chr3L 16757755 intergenic not near genes chr3L_4_16755001 chr3L_16755001 RAL-136 785 chr3L 16764578 16764609 chr3L 16764670 16764715 6 99 1.0 0.0 0.5 4.0 137 chr3L 16764578 intergenic not near genes chr3L 16764646 intergenic not near genes chr3L 16764715 intergenic not near genes chr3L_6_16760001 chr3L_16760001 RAL-136 786 chr3L 16818749 16818773 chr3L 16818824 16818849 6 75 11.0 6.0 8.5 0.6 100 chr3L 16818749 intron,intron nudC +,CG13024 - chr3L 16818799 intron,intron nudC +,CG13024 - chr3L 16818849 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-136 787 chr3L 16869578 16869590 chr3L 16869661 16869673 4 80 4.0 1.5 2.8 1.1 95 chr3L 16869578 intron Lmpt + chr3L 16869626 intron Lmpt + chr3L 16869673 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-136 788 chr3L 16945734 16945747 chr3L 16954886 16954900 roo 4 9151 4.5 2.0 3.2 1.0 9166 chr3L 16945734 exon Obp73a + chr3L 16950317 intergenic not near genes chr3L 16954900 5` UTR Nc73EF + chr3L_4_16950001 chr3L_16950001 RAL-136 789 chr3L 16945748 16945761 chr3L 16954882 16954914 roo 5 9139 3.0 1.5 2.2 1.6 9166 chr3L 16945748 exon Obp73a + chr3L 16950331 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-136 790 chr3L 16986787 16986808 chr3L 16986871 16986887 6 80 7.5 7.0 7.2 0.7 100 chr3L 16986787 intron Exn + chr3L 16986837 intron Exn + chr3L 16986887 intron Exn + chr3L_6_16985001 chr3L_16985001 RAL-136 791 chr3L 17026795 17026823 chr3L 17026872 17026885 5 72 9.5 7.0 8.2 0.5 90 chr3L 17026795 exon Fit2 + chr3L 17026840 3` UTR Fit2 + chr3L 17026885 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-136 792 chr3L 17032185 17032477 chr3L 17032380 17032582 9 177 7.5 10.0 8.8 0.9 397 chr3L 17032185 3` UTR CR45756 - chr3L 17032384 3` UTR CR45756 - chr3L 17032582 3` UTR CR45756 - chr3L_9_17030001 chr3L_17030001 RAL-136 793 chr3L 17085015 17085033 chr3L 17094152 17094182 roo 4 9143 3.5 1.5 2.5 1.1 9167 chr3L 17085015 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-136 794 chr3L 17120652 17120917 chr3L 17120728 17120992 13 73 5.0 1.5 3.2 3.1 340 chr3L 17120652 intron Rbp6 - chr3L 17120822 intron Rbp6 - chr3L 17120992 intron Rbp6 - chr3L_13_17120001 chr3L_17120001 RAL-136 795 chr3L 17331065 17331086 chr3L 17331155 17331165 5 87 6.5 3.0 4.8 0.9 100 chr3L 17331065 intergenic not near genes chr3L 17331115 intergenic not near genes chr3L 17331165 intergenic not near genes chr3L_5_17330001 chr3L_17330001 RAL-136 796 chr3L 17367438 17367456 chr3L 17367531 17367550 5 92 7.0 7.0 7.0 0.6 112 chr3L 17367438 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367550 intergenic CR45688 +,Cad74A - chr3L_5_17365001 chr3L_17365001 RAL-136 797 chr3L 17510744 17510766 chr3L 17510828 17510850 4 81 1.5 6.5 4.0 0.8 106 chr3L 17510744 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-136 798 chr3L 17516980 17517007 chr3L 17524538 17524547 412 14 7550 2.0 3.0 2.5 4.0 7567 chr3L 17516980 intron CG7564 + chr3L 17520764 intron CG7564 + chr3L 17524547 3` UTR CG7564 + chr3L_14_17520001 chr3L_17520001 RAL-136 799 chr3L 17837628 17837652 chr3L 17837712 17837738 10 87 2.0 4.5 3.2 2.4 110 chr3L 17837628 exon Grd + chr3L 17837683 intron Grd + chr3L 17837738 intron Grd + chr3L_10_17835001 chr3L_17835001 RAL-136 800 chr3L 17938602 17938627 chr3L 17938699 17938724 6 97 7.0 6.0 6.5 0.8 122 chr3L 17938602 intron CG43174 + chr3L 17938663 intron CG43174 + chr3L 17938724 intron CG43174 + chr3L_6_17935001 chr3L_17935001 RAL-136 801 chr3L 17986724 17986758 chr3L 17992707 17992728 4 5978 17.0 14.0 15.5 0.2 6004 chr3L 17986724 intron Eip75B - chr3L 17989726 intron Eip75B - chr3L 17992728 intron Eip75B - chr3L_4_17985001 chr3L_17985001 RAL-136 802 chr3L 18026282 18026307 chr3L 18026370 18026393 5 85 3.5 4.0 3.8 1.0 111 chr3L 18026282 intron Eip75B - chr3L 18026338 intron Eip75B - chr3L 18026393 intron Eip75B - chr3L_5_18025001 chr3L_18025001 RAL-136 803 chr3L 18029960 18029981 chr3L 18030036 18030054 7 74 1.0 0.0 0.5 4.7 94 chr3L 18029960 intron Eip75B - chr3L 18030007 intron Eip75B - chr3L 18030054 intron Eip75B - chr3L_7_18030001 chr3L_18030001 RAL-136 804 chr3L 18066833 18066855 chr3L 18066957 18066981 4 122 5.5 5.0 5.2 0.6 148 chr3L 18066833 intergenic not near genes chr3L 18066907 intergenic not near genes chr3L 18066981 intergenic not near genes chr3L_4_18065001 chr3L_18065001 RAL-136 805 chr3L 18203592 18203615 chr3L 18203687 18203695 5 90 2.5 0.0 1.2 2.3 103 chr3L 18203592 3` UTR CG7320 + chr3L 18203644 intergenic CG7320 + chr3L 18203695 intergenic CG7320 + chr3L_5_18200001 chr3L_18200001 RAL-136 806 chr3L 18223174 18223184 chr3L 18223247 18223267 5 81 0.0 0.0 0.0 5.0 93 chr3L 18223174 intergenic not near genes chr3L 18223220 intergenic not near genes chr3L 18223267 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-136 807 chr3L 18248951 18248987 chr3L 18249049 18249084 4 98 2.5 0.5 1.5 1.6 133 chr3L 18248951 intergenic not near genes chr3L 18249018 intergenic not near genes chr3L 18249084 intergenic not near genes chr3L_4_18245001 chr3L_18245001 RAL-136 808 chr3L 18253684 18253713 chr3L 18253892 18253912 4 206 5.0 0.5 2.8 1.1 228 chr3L 18253684 intergenic not near genes chr3L 18253798 intergenic not near genes chr3L 18253912 intergenic not near genes chr3L_4_18250001 chr3L_18250001 RAL-136 809 chr3L 18376089 18376104 chr3L 18376169 18376193 5 86 4.5 4.0 4.2 1.0 104 chr3L 18376089 intergenic not near genes chr3L 18376141 intergenic not near genes chr3L 18376193 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-136 810 chr3L 18408745 18408755 chr3L 18408822 18408839 4 77 6.0 4.0 5.0 0.7 94 chr3L 18408745 intergenic not near genes chr3L 18408792 intergenic not near genes chr3L 18408839 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-136 811 chr3L 18464492 18464507 chr3L 18464575 18464593 4 85 11.5 11.0 11.2 0.3 101 chr3L 18464492 intergenic not near genes chr3L 18464542 intergenic not near genes chr3L 18464593 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-136 812 chr3L 18506139 18506160 chr3L 18509600 18509619 F-element 7 3462 1.5 1.5 1.5 2.8 3480 chr3L 18506139 intergenic not near genes chr3L 18507879 intergenic not near genes chr3L 18509619 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-136 813 chr3L 18546719 18546723 chr3L 18546813 18546816 4 93 9.0 11.0 10.0 0.4 97 chr3L 18546719 intergenic not near genes chr3L 18546768 intergenic not near genes chr3L 18546816 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-136 814 chr3L 18656185 18656214 chr3L 18656267 18656299 7 82 14.0 13.5 13.8 0.5 114 chr3L 18656185 intron MYPT-75D + chr3L 18656242 intron MYPT-75D + chr3L 18656299 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-136 815 chr3L 18677893 18677909 chr3L 18677988 18677992 5 92 12.0 8.0 10.0 0.5 99 chr3L 18677893 intergenic GNBP1 + chr3L 18677942 intergenic GNBP1 + chr3L 18677992 intergenic GNBP1 + chr3L_5_18675001 chr3L_18675001 RAL-136 816 chr3L 18695954 18695983 chr3L 18696074 18696098 7 118 9.0 15.5 12.2 0.5 144 chr3L 18695954 intergenic CG6893 +,Dic4 - chr3L 18696026 intergenic Dic4 -,CG6893 + chr3L 18696098 intergenic Dic4 -,CG6893 + chr3L_7_18695001 chr3L_18695001 RAL-136 817 chr3L 18772408 18772441 chr3L 18781089 18781107 roo 4 8677 2.5 3.0 2.8 1.1 8699 chr3L 18772408 intron ftz-f1 - chr3L 18776758 intron ftz-f1 - chr3L 18781107 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-136 818 chr3L 18833790 18833807 chr3L 18834954 18834971 1360 4 1162 1.0 1.5 1.2 1.8 1181 chr3L 18833790 intron Indy - chr3L 18834380 intron Indy - chr3L 18834971 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-136 819 chr3L 18896765 18896783 chr3L 18896899 18896916 4 132 5.0 6.0 5.5 0.6 151 chr3L 18896765 intron CG3902 - chr3L 18896840 intron CG3902 - chr3L 18896916 intron CG3902 - chr3L_4_18895001 chr3L_18895001 RAL-136 820 chr3L 18928330 18928341 chr3L 18928412 18928420 7 80 8.5 6.0 7.2 0.9 90 chr3L 18928330 intron CG32204 - chr3L 18928375 intron CG32204 - chr3L 18928420 intron CG32204 - chr3L_7_18925001 chr3L_18925001 RAL-136 821 chr3L 18932298 18932306 chr3L 18932391 18932412 6 104 4.5 10.0 7.2 0.7 114 chr3L 18932298 intron CG32204 - chr3L 18932355 intron CG32204 - chr3L 18932412 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-136 822 chr3L 19008850 19008873 chr3L 19009188 19009208 jockey 8 334 1.5 2.5 2.0 2.7 358 chr3L 19008850 intron nkd - chr3L 19009029 intron nkd - chr3L 19009208 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-136 823 chr3L 19117049 19117075 chr3L 19124495 19124519 mdg1 8 7446 2.5 7.0 4.8 1.4 7470 chr3L 19117049 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124519 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-136 824 chr3L 19182390 19182418 chr3L 19182471 19182490 5 77 5.0 7.0 6.0 0.7 100 chr3L 19182390 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182490 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-136 825 chr3L 19208057 19208087 chr3L 19209431 19209460 Doc 9 1373 5.0 2.0 3.5 2.0 1403 chr3L 19208057 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209460 intron fz2 - chr3L_9_19205001 chr3L_19205001 RAL-136 826 chr3L 19391394 19391420 chr3L 19391471 19391503 6 81 5.5 4.5 5.0 1.0 109 chr3L 19391394 intron CG32206 - chr3L 19391448 intron CG32206 - chr3L 19391503 intron CG32206 - chr3L_6_19390001 chr3L_19390001 RAL-136 827 chr3L 19417813 19417830 chr3L 19417878 19417901 4 70 6.5 5.0 5.8 0.6 88 chr3L 19417813 intergenic not near genes chr3L 19417857 intergenic not near genes chr3L 19417901 intergenic not near genes chr3L_4_19415001 chr3L_19415001 RAL-136 828 chr3L 19426764 19426780 chr3L 19426825 19426856 7 68 7.5 7.0 7.2 0.9 92 chr3L 19426764 intergenic not near genes chr3L 19426810 intergenic not near genes chr3L 19426856 intergenic not near genes chr3L_7_19425001 chr3L_19425001 RAL-136 829 chr3L 19527923 19527959 chr3L 19527999 19528021 7 74 1.5 1.0 1.2 3.2 98 chr3L 19527923 intergenic not near genes chr3L 19527972 intergenic not near genes chr3L 19528021 intergenic not near genes chr3L_7_19525001 chr3L_19525001 RAL-136 830 chr3L 19848503 19848533 chr3L 19857693 19857723 roo 12 9189 4.5 3.5 4.0 2.4 9220 chr3L 19848503 intron Papss + chr3L 19853113 intron Papss + chr3L 19857723 intron Papss + chr3L_12_19850001 chr3L_19850001 RAL-136 831 chr3L 19861821 19861843 chr3L 19863609 19863631 S-element 6 1782 3.5 1.5 2.5 1.7 1810 chr3L 19861821 5` UTR CR45433 + chr3L 19862726 intergenic not near genes chr3L 19863631 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-136 832 chr3L 19933538 19933559 chr3L 19934360 19934381 10 820 2.5 2.5 2.5 2.9 843 chr3L 19933538 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934381 intergenic CR45678 + chr3L_10_19930001 chr3L_19930001 RAL-136 833 chr3L 19992100 19992110 chr3L 19992176 19992187 5 76 15.5 9.0 12.2 0.4 87 chr3L 19992100 intron,intron CG7646 +,Nca + chr3L 19992144 intron,intron CG7646 +,Nca + chr3L 19992187 intron,intron CG7646 +,Nca + chr3L_5_19990001 chr3L_19990001 RAL-136 834 chr3L 20143078 20143117 chr3L 20143158 20143177 10 75 1.5 2.5 2.0 3.3 99 chr3L 20143078 intergenic not near genes chr3L 20143128 intergenic not near genes chr3L 20143177 intergenic not near genes chr3L_10_20140001 chr3L_20140001 RAL-136 835 chr3L 20156177 20156193 chr3L 20156286 20156300 11 118 4.5 2.0 3.2 2.6 123 chr3L 20156177 intron CG42674 - chr3L 20156238 intron CG42674 - chr3L 20156300 intron CG42674 - chr3L_11_20155001 chr3L_20155001 RAL-136 836 chr3L 20257339 20257360 chr3L 20258459 20258479 pogo 5 1120 2.0 5.5 3.8 1.0 1140 chr3L 20257339 intron rdgC + chr3L 20257909 intron rdgC + chr3L 20258479 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-136 837 chr3L 20283684 20283696 chr3L 20283768 20283780 4 84 10.0 8.5 9.2 0.4 96 chr3L 20283684 intron gogo - chr3L 20283732 intron gogo - chr3L 20283780 intron gogo - chr3L_4_20280001 chr3L_20280001 RAL-136 838 chr3L 20377487 20377502 chr3L 20377553 20377568 4 71 5.5 6.5 6.0 0.6 81 chr3L 20377487 intron RhoBTB + chr3L 20377528 intron RhoBTB + chr3L 20377568 intron RhoBTB + chr3L_4_20375001 chr3L_20375001 RAL-136 839 chr3L 20386951 20386972 chr3L 20387048 20387074 5 99 0.5 3.0 1.8 1.8 123 chr3L 20386951 intron fbl + chr3L 20387012 intron fbl + chr3L 20387074 intron fbl + chr3L_5_20385001 chr3L_20385001 RAL-136 840 chr3L 20394525 20394545 chr3L 20394608 20394624 7 81 14.0 10.5 12.2 0.5 99 chr3L 20394525 intergenic not near genes chr3L 20394574 intergenic not near genes chr3L 20394624 intergenic not near genes chr3L_7_20390001 chr3L_20390001 RAL-136 841 chr3L 20403592 20403605 chr3L 20403674 20403686 5 85 0.5 2.0 1.2 2.3 94 chr3L 20403592 intergenic not near genes chr3L 20403639 intergenic not near genes chr3L 20403686 intergenic not near genes chr3L_5_20400001 chr3L_20400001 RAL-136 842 chr3L 20476752 20476784 chr3L 20484351 20484383 springer 7 7598 1.0 1.0 1.0 3.5 7631 chr3L 20476752 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-136 843 chr3L 21082231 21082238 chr3L 21082290 21082316 4 70 1.5 2.5 2.0 1.3 85 chr3L 21082231 intron ko - chr3L 21082274 intron ko - chr3L 21082316 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-136 844 chr3L 21151863 21151891 chr3L 21156947 21156975 flea 13 5083 3.5 1.5 2.5 3.7 5112 chr3L 21151863 intron Ac78C - chr3L 21154419 intron Ac78C - chr3L 21156975 intron Ac78C - chr3L_13_21150001 chr3L_21150001 RAL-136 845 chr3L 21243746 21243760 chr3L 21251309 21251323 412 4 7563 2.5 4.5 3.5 0.9 7577 chr3L 21243746 intron Eip78C + chr3L 21247534 intron Eip78C + chr3L 21251323 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-136 846 chr3L 21301733 21301760 chr3L 21301818 21301834 5 76 8.5 7.5 8.0 0.6 101 chr3L 21301733 5` UTR CR45432 + chr3L 21301784 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301834 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_5_21300001 chr3L_21300001 RAL-136 847 chr3L 21306162 21306177 chr3L 21315309 21315320 roo 6 9152 2.5 2.5 2.5 1.7 9158 chr3L 21306162 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310741 intron Pc - chr3L 21315320 3` UTR Pc - chr3L_6_21310001 chr3L_21310001 RAL-136 848 chr3L 21407001 21407025 chr3L 21407080 21407095 4 74 3.5 4.5 4.0 0.8 94 chr3L 21407001 intron rgn + chr3L 21407048 intron rgn + chr3L 21407095 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-136 849 chr3L 21415146 21415166 chr3L 21415220 21415248 6 81 3.5 9.0 6.2 0.8 102 chr3L 21415146 intron rgn + chr3L 21415197 intron rgn + chr3L 21415248 intron rgn + chr3L_6_21415001 chr3L_21415001 RAL-136 850 chr3L 21498852 21498869 chr3L 21500472 21500480 1360 7 1626 4.0 3.0 3.5 1.6 1628 chr3L 21498852 intron Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500480 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-136 851 chr3L 21749318 21749329 chr3L 21754478 21754481 Doc 4 5157 3.5 5.0 4.2 0.8 5163 chr3L 21749318 intron Syn1 - chr3L 21751900 intron Syn1 - chr3L 21754481 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-136 852 chr3L 21885057 21885080 chr3L 21885143 21885176 4 92 3.0 3.0 3.0 1.0 119 chr3L 21885057 intron,intron mub +,CR43878 - chr3L 21885116 intron,intron mub +,CR43878 - chr3L 21885176 intron,intron mub +,CR43878 - chr3L_4_21885001 chr3L_21885001 RAL-136 853 chr3L 21905355 21905366 chr3L 21905413 21905428 4 68 6.0 4.5 5.2 0.6 73 chr3L 21905355 intron mub + chr3L 21905392 intron mub + chr3L 21905428 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-136 854 chr3L 22010630 22010656 chr3L 22010779 22010805 4 141 0.5 1.0 0.8 2.2 175 chr3L 22010630 intergenic not near genes chr3L 22010718 intergenic not near genes chr3L 22010805 intergenic not near genes chr3L_4_22010001 chr3L_22010001 RAL-136 855 chr3L 22032176 22032204 chr3L 22032297 22032311 5 115 7.0 11.5 9.2 0.5 135 chr3L 22032176 intergenic not near genes chr3L 22032244 intergenic not near genes chr3L 22032311 intergenic not near genes chr3L_5_22030001 chr3L_22030001 RAL-136 856 chr3L 22044567 22044599 chr3L 22044648 22044664 5 75 8.5 7.5 8.0 0.6 97 chr3L 22044567 intron Oct-TyrR + chr3L 22044616 intron Oct-TyrR + chr3L 22044664 intron Oct-TyrR + chr3L_5_22040001 chr3L_22040001 RAL-136 857 chr3L 22083293 22083313 chr3L 22083369 22083385 4 70 6.0 2.5 4.2 0.8 92 chr3L 22083293 3` UTR msopa + chr3L 22083339 3` UTR msopa + chr3L 22083385 intergenic msopa + chr3L_4_22080001 chr3L_22080001 RAL-136 858 chr3L 22124811 22124836 chr3L 22124893 22124895 4 76 8.0 5.5 6.8 0.5 84 chr3L 22124811 intergenic not near genes chr3L 22124853 intergenic not near genes chr3L 22124895 intergenic not near genes chr3L_4_22120001 chr3L_22120001 RAL-136 859 chr3L 22256433 22256466 chr3L 22256517 22256539 6 80 9.5 10.5 10.0 0.5 106 chr3L 22256433 intergenic not near genes chr3L 22256486 intergenic not near genes chr3L 22256539 intergenic not near genes chr3L_6_22255001 chr3L_22255001 RAL-136 860 chr3L 22269224 22269233 chr3L 22269292 22269319 5 78 6.0 8.5 7.2 0.6 95 chr3L 22269224 intron Csp + chr3L 22269272 intron Csp + chr3L 22269319 intron Csp + chr3L_5_22265001 chr3L_22265001 RAL-136 861 chr3L 22382721 22382730 chr3L 22382802 22382811 4 80 19.5 16.5 18.0 0.2 90 chr3L 22382721 intron Ten-m - chr3L 22382766 intron Ten-m - chr3L 22382811 intron Ten-m - chr3L_4_22380001 chr3L_22380001 RAL-136 862 chr3L 22456339 22456350 chr3L 22456397 22456400 4 66 8.0 7.0 7.5 0.5 61 chr3L 22456339 intergenic CG11449 + chr3L 22456370 intergenic CG11449 + chr3L 22456400 intergenic CG11449 + chr3L_4_22455001 chr3L_22455001 RAL-136 863 chr3L 22522701 22522725 chr3L 22522774 22522802 7 75 1.5 1.5 1.5 2.8 101 chr3L 22522701 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522802 intergenic not near genes chr3L_7_22520001 chr3L_22520001 RAL-136 864 chr3L 22524436 22524450 chr3L 22524511 22524526 5 75 10.5 15.5 13.0 0.4 90 chr3L 22524436 intergenic not near genes chr3L 22524481 intergenic not near genes chr3L 22524526 intergenic not near genes chr3L_5_22520001 chr3L_22520001 RAL-136 865 chr3L 22577625 22577638 chr3L 22582413 22582425 Doc 4 4787 6.0 5.0 5.5 0.6 4800 chr3L 22577625 intergenic not near genes chr3L 22580025 intergenic not near genes chr3L 22582425 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-136 866 chr3L 22577639 22577649 chr3L 22582411 22582437 Doc 7 4784 4.0 4.0 4.0 1.4 4798 chr3L 22577639 intergenic not near genes chr3L 22580038 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-136 867 chr3L 22617194 22617222 chr3L 22624643 22624674 blood 9 7449 1.0 4.0 2.5 2.6 7480 chr3L 22617194 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624674 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-136 868 chr3L 22652321 22652350 chr3L 22652458 22652474 5 135 7.5 9.5 8.5 0.5 153 chr3L 22652321 exon CG33772 - chr3L 22652398 intron CG33772 - chr3L 22652474 exon CG33772 - chr3L_5_22650001 chr3L_22650001 RAL-136 869 chr3L 22678090 22678108 chr3L 22678170 22678201 4 82 13.5 10.5 12.0 0.3 111 chr3L 22678090 intron CG14457 + chr3L 22678146 intron CG14457 + chr3L 22678201 intron CG14457 + chr3L_4_22675001 chr3L_22675001 RAL-136 870 chr3L 22732463 22732490 chr3L 22732544 22732571 7 80 5.5 7.0 6.2 1.0 108 chr3L 22732463 intron CG11367 + chr3L 22732517 intron CG11367 + chr3L 22732571 intron CG11367 + chr3L_7_22730001 chr3L_22730001 RAL-136 871 chr3L 22761395 22761418 chr3L 22766829 22766851 Ivk 7 5431 1.5 2.0 1.8 2.5 5456 chr3L 22761395 intron SPoCk + chr3L 22764123 intron SPoCk + chr3L 22766851 intron SPoCk + chr3L_7_22760001 chr3L_22760001 RAL-136 872 chr3L 22853473 22853710 chr3L 22853548 22853791 9 85 6.5 9.5 8.0 1.0 318 chr3L 22853473 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853632 5` UTR CR43426 + chr3L 22853791 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-136 873 chr3L 22980591 22980598 chr3L 22980664 22980676 4 80 3.5 5.0 4.2 0.8 85 chr3L 22980591 intergenic not near genes chr3L 22980634 intergenic not near genes chr3L 22980676 intergenic not near genes chr3L_4_22980001 chr3L_22980001 RAL-136 874 chr3L 23042225 23042259 chr3L 23048978 23048993 gypsy6 6 6750 8.5 8.0 8.2 0.7 6768 chr3L 23042225 intergenic not near genes chr3L 23045609 intergenic not near genes chr3L 23048993 intergenic not near genes chr3L_6_23045001 chr3L_23045001 RAL-136 875 chr3L 23150650 23150674 chr3L 23150739 23150749 6 86 3.0 3.0 3.0 1.5 99 chr3L 23150650 5` UTR CR45164 + chr3L 23150700 intergenic CR45164 +,CG32350 - chr3L 23150749 intergenic CR45164 +,CG32350 - chr3L_6_23150001 chr3L_23150001 RAL-136 876 chr3L 23182821 23182848 chr3L 23182893 23182909 7 73 6.5 7.0 6.8 0.9 88 chr3L 23182821 intron CG34031 + chr3L 23182865 intron CG34031 + chr3L 23182909 intron CG34031 + chr3L_7_23180001 chr3L_23180001 RAL-136 877 chr3L 23280167 23280178 chr3L 23280266 23280283 7 103 1.0 5.0 3.0 1.8 116 chr3L 23280167 intron nAChRalpha4 + chr3L 23280225 intron nAChRalpha4 + chr3L 23280283 intron nAChRalpha4 + chr3L_7_23280001 chr3L_23280001 RAL-136 878 chr3L 23428257 23428273 chr3L 23428333 23428352 4 76 7.0 7.0 7.0 0.5 95 chr3L 23428257 intergenic not near genes chr3L 23428304 intergenic not near genes chr3L 23428352 intergenic not near genes chr3L_4_23425001 chr3L_23425001 RAL-136 879 chr3L 24012423 24012439 chr3L 24020763 24020780 roo 4 8333 1.0 2.5 1.8 1.4 8357 chr3L 24012423 intergenic not near genes chr3L 24016602 intergenic not near genes chr3L 24020780 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-136 880 chr3L 24021278 24021311 chr3L 24022435 24022468 1360 4 1155 1.5 1.0 1.2 1.8 1190 chr3L 24021278 intergenic not near genes chr3L 24021873 intergenic not near genes chr3L 24022468 intergenic not near genes chr3L_4_24020001 chr3L_24020001 RAL-136 881 chr3L 25344700 25344723 chr3L 25344786 25344809 4 86 7.0 4.0 5.5 0.6 109 chr3L 25344700 intergenic not near genes chr3L 25344754 intergenic not near genes chr3L 25344809 intergenic not near genes chr3L_4_25340001 chr3L_25340001 RAL-136 882 chr3L 25513583 25513610 chr3L 25513655 25513689 4 74 6.0 5.0 5.5 0.6 106 chr3L 25513583 intron CG41343 - chr3L 25513636 intron CG41343 - chr3L 25513689 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-136 883 chr3L 25514879 25514905 chr3L 25514967 25514997 8 88 5.0 9.0 7.0 1.0 118 chr3L 25514879 intron CG41343 - chr3L 25514938 intron CG41343 - chr3L 25514997 intron CG41343 - chr3L_8_25510001 chr3L_25510001 RAL-136 884 chr3L 25627822 25627832 chr3L 25627892 25627915 4 78 2.0 3.0 2.5 1.1 93 chr3L 25627822 intron CG41343 - chr3L 25627868 intron CG41343 - chr3L 25627915 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-136 885 chr3L 25842489 25842498 chr3L 25842557 25842583 5 78 0.5 1.5 1.0 2.5 94 chr3L 25842489 intron CG40178 - chr3L 25842536 intron CG40178 - chr3L 25842583 intron CG40178 - chr3L_5_25840001 chr3L_25840001 RAL-136 886 chr3L 26009437 26009455 chr3L 26009517 26009546 4 85 1.5 2.0 1.8 1.4 109 chr3L 26009437 intron CG40178 - chr3L 26009492 intron CG40178 - chr3L 26009546 intron CG40178 - chr3L_4_26005001 chr3L_26005001 RAL-136 887 chr3L 26694925 26694958 chr3L 26695005 26695023 8 75 3.0 3.5 3.2 1.9 98 chr3L 26694925 intergenic not near genes chr3L 26694974 intergenic not near genes chr3L 26695023 intergenic not near genes chr3L_8_26690001 chr3L_26690001 RAL-136 888 chr3L 27368887 27368910 chr3L 27369431 27369448 6 542 1.5 0.5 1.0 3.0 561 chr3L 27368887 intron Dbp80 + chr3L 27369168 intron Dbp80 + chr3L 27369448 intron Dbp80 + chr3L_6_27365001 chr3L_27365001 RAL-136 889 chr3R 1202776 1202796 chr3R 1203135 1203156 4 356 4.0 3.5 3.8 0.8 380 chr3R 1202776 intergenic not near genes chr3R 1202966 intergenic not near genes chr3R 1203156 intergenic not near genes chr3R_4_1200001 chr3R_1200001 RAL-136 890 chr3R 1443433 1443454 chr3R 1443509 1443530 4 75 2.5 1.0 1.8 1.4 97 chr3R 1443433 intron CG40155 + chr3R 1443482 intron CG40155 + chr3R 1443530 intron CG40155 + chr3R_4_1440001 chr3R_1440001 RAL-136 891 chr3R 2534138 2534167 chr3R 2541701 2541736 13 7562 13.0 14.5 13.8 0.9 7598 chr3R 2534138 intergenic not near genes chr3R 2537937 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_13_2535001 chr3R_2535001 RAL-136 892 chr3R 3073337 3073349 chr3R 3073731 3073759 4 406 5.5 1.0 3.2 1.0 422 chr3R 3073337 intergenic not near genes chr3R 3073548 intergenic not near genes chr3R 3073759 intergenic not near genes chr3R_4_3070001 chr3R_3070001 RAL-136 893 chr3R 3267251 3267272 chr3R 3267444 3267456 6 188 10.5 13.0 11.8 0.5 205 chr3R 3267251 intergenic not near genes chr3R 3267354 intergenic not near genes chr3R 3267456 intergenic not near genes chr3R_6_3265001 chr3R_3265001 RAL-136 894 chr3R 4012503 4012511 chr3R 4012592 4012600 4 89 10.5 7.5 9.0 0.4 97 chr3R 4012503 intergenic not near genes chr3R 4012552 intergenic not near genes chr3R 4012600 intergenic not near genes chr3R_4_4010001 chr3R_4010001 RAL-136 895 chr3R 4012517 4012529 chr3R 4012589 4012602 4 78 7.5 7.5 7.5 0.5 85 chr3R 4012517 intergenic not near genes chr3R 4012560 intergenic not near genes chr3R 4012602 intergenic not near genes chr3R_4_4010001 chr3R_4010001 RAL-136 896 chr3R 4105043 4105069 chr3R 4110247 4110262 copia 5 5201 3.0 1.5 2.2 1.6 5219 chr3R 4105043 intergenic not near genes chr3R 4107652 intergenic not near genes chr3R 4110262 intergenic not near genes chr3R_5_4105001 chr3R_4105001 RAL-136 897 chr3R 4395013 4395046 chr3R 4395829 4395853 4 814 3.0 17.0 10.0 0.4 840 chr3R 4395013 intergenic not near genes chr3R 4395433 intergenic not near genes chr3R 4395853 intergenic CG9855 - chr3R_4_4395001 chr3R_4395001 RAL-136 898 chr3R 4408409 4408448 chr3R 4412713 4412744 Juan 4 4302 2.0 3.0 2.5 1.1 4335 chr3R 4408409 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412744 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-136 899 chr3R 4475511 4475546 chr3R 4475738 4475774 9 226 3.0 4.0 3.5 2.0 263 chr3R 4475511 intron CG31523 - chr3R 4475642 intron CG31523 - chr3R 4475774 intron CG31523 - chr3R_9_4475001 chr3R_4475001 RAL-136 900 chr3R 4568602 4568723 chr3R 4568685 4568815 5 86 6.5 7.5 7.0 0.6 213 chr3R 4568602 intergenic not near genes chr3R 4568708 intergenic not near genes chr3R 4568815 intergenic not near genes chr3R_5_4565001 chr3R_4565001 RAL-136 901 chr3R 4606753 4606780 chr3R 4607102 4607128 4 349 2.5 6.5 4.5 0.7 375 chr3R 4606753 intergenic not near genes chr3R 4606940 intergenic not near genes chr3R 4607128 intergenic not near genes chr3R_4_4605001 chr3R_4605001 RAL-136 902 chr3R 4609545 4609580 chr3R 4610709 4610744 1360 11 1161 3.5 0.5 2.0 3.7 1199 chr3R 4609545 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_11_4610001 chr3R_4610001 RAL-136 903 chr3R 4681830 4681856 chr3R 4681910 4681930 7 77 7.5 9.0 8.2 0.8 100 chr3R 4681830 intron CG43427 + chr3R 4681880 intron CG43427 + chr3R 4681930 intron CG43427 + chr3R_7_4680001 chr3R_4680001 RAL-136 904 chr3R 4683179 4683209 chr3R 4684938 4684968 S-element 8 1756 1.5 2.0 1.8 2.9 1789 chr3R 4683179 intron CG43427 + chr3R 4684074 intron CG43427 + chr3R 4684968 intron CG43427 + chr3R_8_4680001 chr3R_4680001 RAL-136 905 chr3R 4753240 4753274 chr3R 4757543 4757562 F-element 11 4300 4.5 4.0 4.2 2.1 4322 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755401 intron,intron atms +,CG44098 - chr3R 4757562 intron,exon atms +,CG44098 - chr3R_11_4755001 chr3R_4755001 RAL-136 906 chr3R 4759731 4759745 chr3R 4761225 4761242 hopper2 5 1494 3.5 7.0 5.2 0.8 1511 chr3R 4759731 intron,intron atms +,CG44098 - chr3R 4760486 intron,intron atms +,CG44098 - chr3R 4761242 intron,intron atms +,CG44098 - chr3R_5_4760001 chr3R_4760001 RAL-136 907 chr3R 4861572 4861596 chr3R 4861646 4861660 9 73 2.5 3.0 2.8 2.4 88 chr3R 4861572 intron opa + chr3R 4861616 intron opa + chr3R 4861660 intron opa + chr3R_9_4860001 chr3R_4860001 RAL-136 908 chr3R 4913729 4913750 chr3R 4913818 4913823 5 87 9.0 8.0 8.5 0.5 94 chr3R 4913729 intron Cdep + chr3R 4913776 intron Cdep + chr3R 4913823 intron Cdep + chr3R_5_4910001 chr3R_4910001 RAL-136 909 chr3R 4966019 4966023 chr3R 4966111 4966113 4 91 4.5 5.0 4.8 0.7 94 chr3R 4966019 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966113 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-136 910 chr3R 4974242 4974266 chr3R 4974414 4974438 4 172 5.0 1.5 3.2 1.0 196 chr3R 4974242 intergenic not near genes chr3R 4974340 intergenic not near genes chr3R 4974438 intergenic not near genes chr3R_4_4970001 chr3R_4970001 RAL-136 911 chr3R 5045844 5045875 chr3R 5052946 5052977 HMS-Beagle 8 7102 5.0 1.5 3.2 1.9 7133 chr3R 5045844 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_8_5045001 chr3R_5045001 RAL-136 912 chr3R 5158145 5158175 chr3R 5158237 5158268 4 90 8.5 10.0 9.2 0.4 123 chr3R 5158145 intron dpr16 + chr3R 5158206 intron dpr16 + chr3R 5158268 intron dpr16 + chr3R_4_5155001 chr3R_5155001 RAL-136 913 chr3R 5327188 5327209 chr3R 5327265 5327284 4 76 8.0 14.5 11.2 0.3 96 chr3R 5327188 intron mtd - chr3R 5327236 intron mtd - chr3R 5327284 intron mtd - chr3R_4_5325001 chr3R_5325001 RAL-136 914 chr3R 5338406 5338419 chr3R 5343579 5343596 Rt1c 5 5174 2.0 7.0 4.5 0.9 5190 chr3R 5338406 intron mtd - chr3R 5341001 intron mtd - chr3R 5343596 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-136 915 chr3R 5445974 5445994 chr3R 5452419 5452454 Burdock 6 6457 0.5 2.0 1.2 2.7 6480 chr3R 5445974 intron CG14669 + chr3R 5449214 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-136 916 chr3R 5746018 5746046 chr3R 5746255 5746287 pogo 11 238 2.0 4.5 3.2 2.6 269 chr3R 5746018 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_11_5745001 chr3R_5745001 RAL-136 917 chr3R 5772375 5772409 chr3R 5772533 5772566 9 156 0.5 0.5 0.5 6.0 191 chr3R 5772375 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_9_5770001 chr3R_5770001 RAL-136 918 chr3R 5809115 5809145 chr3R 5809356 5809383 pogo 10 238 1.5 2.5 2.0 3.3 268 chr3R 5809115 3` UTR CG11000 + chr3R 5809249 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 RAL-136 919 chr3R 5822392 5822413 chr3R 5823559 5823580 1360 7 1166 2.5 2.5 2.5 2.0 1188 chr3R 5822392 3` UTR CG2023 - chr3R 5822986 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-136 920 chr3R 5917483 5917497 chr3R 5917811 5917825 4 334 8.5 5.0 6.8 0.5 342 chr3R 5917483 intron CG34113 - chr3R 5917654 intron CG34113 - chr3R 5917825 intron CG34113 - chr3R_4_5915001 chr3R_5915001 RAL-136 921 chr3R 5927565 5927583 chr3R 5927805 5927816 pogo 6 238 4.5 3.5 4.0 1.2 251 chr3R 5927565 intron CG34113 - chr3R 5927690 intron CG34113 - chr3R 5927816 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-136 922 chr3R 5989355 5989368 chr3R 5989416 5989451 6 72 10.0 10.0 10.0 0.5 96 chr3R 5989355 5` UTR CR44927 + chr3R 5989403 5` UTR CR44927 + chr3R 5989451 5` UTR CR44927 + chr3R_6_5985001 chr3R_5985001 RAL-136 923 chr3R 6015972 6015991 chr3R 6024441 6024458 Tirant 9 8475 3.5 5.5 4.5 1.6 8486 chr3R 6015972 intergenic not near genes chr3R 6020215 intergenic not near genes chr3R 6024458 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-136 924 chr3R 6028192 6028223 chr3R 6028273 6028301 10 81 11.5 11.0 11.2 0.8 109 chr3R 6028192 intergenic not near genes chr3R 6028246 intergenic not near genes chr3R 6028301 intergenic not near genes chr3R_10_6025001 chr3R_6025001 RAL-136 925 chr3R 6117426 6117443 chr3R 6117547 6117547 4 115 6.5 8.0 7.2 0.5 121 chr3R 6117426 intergenic not near genes chr3R 6117486 intergenic not near genes chr3R 6117547 intergenic not near genes chr3R_4_6115001 chr3R_6115001 RAL-136 926 chr3R 6158510 6158540 chr3R 6167092 6167093 Tirant 8 8576 4.5 3.5 4.0 1.6 8583 chr3R 6158510 intergenic not near genes chr3R 6162802 intergenic not near genes chr3R 6167093 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-136 927 chr3R 6206313 6206320 chr3R 6206506 6206520 BS 6 202 4.0 5.5 4.8 1.0 207 chr3R 6206313 exon Osi24 + chr3R 6206416 intron Osi24 + chr3R 6206520 intron Osi24 + chr3R_6_6205001 chr3R_6205001 RAL-136 928 chr3R 6532114 6532129 chr3R 6532478 6532503 4 368 13.0 4.0 8.5 0.4 389 chr3R 6532114 intron dpr11 - chr3R 6532308 intron dpr11 - chr3R 6532503 intron dpr11 - chr3R_4_6530001 chr3R_6530001 RAL-136 929 chr3R 6639910 6639929 chr3R 6639987 6640007 9 75 4.5 0.0 2.2 2.8 97 chr3R 6639910 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640007 intergenic not near genes chr3R_9_6635001 chr3R_6635001 RAL-136 930 chr3R 6663625 6663630 chr3R 6663682 6663709 5 71 12.0 11.5 11.8 0.4 84 chr3R 6663625 intron lab - chr3R 6663667 intron lab - chr3R 6663709 intron lab - chr3R_5_6660001 chr3R_6660001 RAL-136 931 chr3R 6725166 6725192 chr3R 6725301 6725321 6 134 4.5 9.0 6.8 0.8 155 chr3R 6725166 intron pb - chr3R 6725244 intron pb - chr3R 6725321 intron pb - chr3R_6_6725001 chr3R_6725001 RAL-136 932 chr3R 6804212 6804223 chr3R 6804305 6804332 4 104 6.0 4.0 5.0 0.7 120 chr3R 6804212 intergenic not near genes chr3R 6804272 intergenic not near genes chr3R 6804332 intergenic not near genes chr3R_4_6800001 chr3R_6800001 RAL-136 933 chr3R 6891238 6891261 chr3R 6891313 6891336 4 76 2.0 2.5 2.2 1.2 98 chr3R 6891238 intergenic not near genes chr3R 6891287 intergenic not near genes chr3R 6891336 intergenic not near genes chr3R_4_6890001 chr3R_6890001 RAL-136 934 chr3R 6912110 6912130 chr3R 6912221 6912241 4 110 5.0 3.0 4.0 0.8 131 chr3R 6912110 intron Antp - chr3R 6912176 intron Antp - chr3R 6912241 intron Antp - chr3R_4_6910001 chr3R_6910001 RAL-136 935 chr3R 6961181 6961206 chr3R 6961256 6961281 6 77 7.0 7.0 7.0 0.8 100 chr3R 6961181 intron Antp - chr3R 6961231 intron Antp - chr3R 6961281 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-136 936 chr3R 7103936 7103960 chr3R 7104031 7104056 4 97 7.5 8.0 7.8 0.5 120 chr3R 7103936 intron Alh - chr3R 7103996 intron Alh - chr3R 7104056 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-136 937 chr3R 7206897 7206904 chr3R 7206986 7206987 4 87 9.0 8.0 8.5 0.4 90 chr3R 7206897 intergenic CG1288 - chr3R 7206942 intergenic CG1288 - chr3R 7206987 intergenic CG1288 - chr3R_4_7205001 chr3R_7205001 RAL-136 938 chr3R 7437680 7437695 chr3R 7437936 7437961 6 260 10.5 6.5 8.5 0.6 281 chr3R 7437680 intergenic not near genes chr3R 7437820 intergenic not near genes chr3R 7437961 intergenic not near genes chr3R_6_7435001 chr3R_7435001 RAL-136 939 chr3R 7447992 7448012 chr3R 7448070 7448090 4 78 5.5 4.0 4.8 0.7 98 chr3R 7447992 intergenic not near genes chr3R 7448041 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-136 940 chr3R 7464697 7464724 chr3R 7464777 7464810 8 83 6.0 12.0 9.0 0.8 113 chr3R 7464697 intergenic not near genes chr3R 7464754 intergenic not near genes chr3R 7464810 intergenic not near genes chr3R_8_7460001 chr3R_7460001 RAL-136 941 chr3R 7556945 7556966 chr3R 7557038 7557059 7 91 8.0 11.5 9.8 0.6 114 chr3R 7556945 intergenic not near genes chr3R 7557002 intergenic not near genes chr3R 7557059 intergenic not near genes chr3R_7_7555001 chr3R_7555001 RAL-136 942 chr3R 7621554 7621564 chr3R 7621630 7621647 4 80 0.0 5.0 2.5 1.1 93 chr3R 7621554 intron CG34127 - chr3R 7621600 intron CG34127 - chr3R 7621647 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-136 943 chr3R 7724441 7724476 chr3R 7724531 7724550 6 82 9.5 13.0 11.2 0.5 109 chr3R 7724441 3` UTR CG2616 + chr3R 7724496 3` UTR CG2616 + chr3R 7724550 3` UTR CG2616 + chr3R_6_7720001 chr3R_7720001 RAL-136 944 chr3R 7729479 7729499 chr3R 7737417 7737437 Stalker2 6 7934 1.0 4.0 2.5 1.7 7958 chr3R 7729479 intergenic not near genes chr3R 7733458 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-136 945 chr3R 7821718 7821742 chr3R 7821814 7821832 4 94 6.0 6.0 6.0 0.6 114 chr3R 7821718 intron CG34384 + chr3R 7821775 intron CG34384 + chr3R 7821832 intron CG34384 + chr3R_4_7820001 chr3R_7820001 RAL-136 946 chr3R 7822157 7822192 chr3R 7822278 7822313 4 121 4.5 8.5 6.5 0.5 156 chr3R 7822157 intron CG34384 + chr3R 7822235 intron CG34384 + chr3R 7822313 intron CG34384 + chr3R_4_7820001 chr3R_7820001 RAL-136 947 chr3R 7849648 7849668 chr3R 7850815 7850835 1360 4 1167 0.0 4.0 2.0 1.3 1187 chr3R 7849648 intron CG34384 + chr3R 7850242 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-136 948 chr3R 7857651 7857668 chr3R 7857727 7857734 6 75 8.0 9.0 8.5 0.6 83 chr3R 7857651 3` UTR CG17816 - chr3R 7857692 3` UTR CG17816 - chr3R 7857734 3` UTR CG17816 - chr3R_6_7855001 chr3R_7855001 RAL-136 949 chr3R 7951468 7951492 chr3R 7951559 7951591 5 97 4.5 3.5 4.0 1.0 123 chr3R 7951468 intron dsx - chr3R 7951530 intron dsx - chr3R 7951591 intron dsx - chr3R_5_7950001 chr3R_7950001 RAL-136 950 chr3R 8074747 8074765 chr3R 8074831 8074849 4 83 11.0 7.5 9.2 0.4 102 chr3R 8074747 intron mAChR-B + chr3R 8074798 intron mAChR-B + chr3R 8074849 intron mAChR-B + chr3R_4_8070001 chr3R_8070001 RAL-136 951 chr3R 8090271 8090290 chr3R 8090448 8090457 6 172 10.0 7.0 8.5 0.6 186 chr3R 8090271 5` UTR CR44330 + chr3R 8090364 intergenic CR44330 + chr3R 8090457 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-136 952 chr3R 8094406 8094436 chr3R 8099711 8099741 Transpac 8 5303 3.5 2.5 3.0 2.0 5335 chr3R 8094406 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099741 intron CG7900 + chr3R_8_8095001 chr3R_8095001 RAL-136 953 chr3R 8101767 8101791 chr3R 8104848 8104875 G2 6 3081 1.0 1.5 1.2 2.7 3108 chr3R 8101767 exon CG7900 + chr3R 8103321 intron CG7900 + chr3R 8104875 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-136 954 chr3R 8182658 8182683 chr3R 8182746 8182777 9 93 3.5 3.5 3.5 2.0 119 chr3R 8182658 intergenic not near genes chr3R 8182718 intergenic not near genes chr3R 8182777 intergenic not near genes chr3R_9_8180001 chr3R_8180001 RAL-136 955 chr3R 8207574 8207587 chr3R 8208399 8208428 F-element 6 834 1.0 6.0 3.5 1.3 854 chr3R 8207574 intergenic not near genes chr3R 8208001 intergenic not near genes chr3R 8208428 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-136 956 chr3R 8273755 8273765 chr3R 8273842 8273851 4 87 3.0 4.5 3.8 0.8 96 chr3R 8273755 intergenic not near genes chr3R 8273803 intergenic not near genes chr3R 8273851 intergenic not near genes chr3R_4_8270001 chr3R_8270001 RAL-136 957 chr3R 8276799 8276812 chr3R 8276865 8276894 4 78 12.5 14.0 13.2 0.3 95 chr3R 8276799 intergenic not near genes chr3R 8276846 intergenic not near genes chr3R 8276894 intergenic not near genes chr3R_4_8275001 chr3R_8275001 RAL-136 958 chr3R 8339247 8339247 chr3R 21907534 21907536 4 13568288 14.5 21.0 17.8 0.2 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-136 959 chr3R 8403006 8403041 chr3R 8412171 8412203 roo 11 9161 3.0 4.5 3.8 2.3 9197 chr3R 8403006 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412203 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-136 960 chr3R 8424771 8424793 chr3R 8424845 8424863 6 77 10.0 10.0 10.0 0.5 92 chr3R 8424771 intron CG45263 - chr3R 8424817 intron CG45263 - chr3R 8424863 intron CG45263 - chr3R_6_8420001 chr3R_8420001 RAL-136 961 chr3R 8449836 8449846 chr3R 8449907 8449929 4 81 10.5 8.5 9.5 0.4 93 chr3R 8449836 intron CG45263 - chr3R 8449882 intron CG45263 - chr3R 8449929 intron CG45263 - chr3R_4_8445001 chr3R_8445001 RAL-136 962 chr3R 8485347 8485426 chr3R 8485416 8485514 4 80 4.5 2.0 3.2 1.0 167 chr3R 8485347 intergenic not near genes chr3R 8485430 intergenic not near genes chr3R 8485514 intergenic not near genes chr3R_4_8485001 chr3R_8485001 RAL-136 963 chr3R 8570479 8570507 chr3R 8575115 8575141 HMS-Beagle 8 4633 4.5 5.0 4.8 1.4 4662 chr3R 8570479 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575141 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-136 964 chr3R 8601771 8601788 chr3R 8610923 8610940 roo 5 9151 7.0 1.0 4.0 1.0 9169 chr3R 8601771 intron 5-HT2B + chr3R 8606356 intron 5-HT2B + chr3R 8610940 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-136 965 chr3R 8601792 8601796 chr3R 8610918 8610944 roo 4 9145 6.0 1.0 3.5 0.9 9152 chr3R 8601792 intron 5-HT2B + chr3R 8606368 intron 5-HT2B + chr3R 8610944 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-136 966 chr3R 8630902 8630931 chr3R 8631008 8631018 4 101 2.5 3.0 2.8 1.1 116 chr3R 8630902 intergenic not near genes chr3R 8630960 intergenic not near genes chr3R 8631018 intergenic not near genes chr3R_4_8630001 chr3R_8630001 RAL-136 967 chr3R 8707356 8707381 chr3R 8709794 8709822 jockey 10 2439 9.0 2.0 5.5 1.5 2466 chr3R 8707356 intergenic not near genes chr3R 8708589 intergenic not near genes chr3R 8709822 intergenic not near genes chr3R_10_8705001 chr3R_8705001 RAL-136 968 chr3R 8740252 8740272 chr3R 8740341 8740350 4 86 4.0 9.0 6.5 0.5 98 chr3R 8740252 intron CG9801 - chr3R 8740301 intron CG9801 - chr3R 8740350 intron CG9801 - chr3R_4_8740001 chr3R_8740001 RAL-136 969 chr3R 8743190 8743221 chr3R 8743272 8743295 9 77 15.0 15.0 15.0 0.6 105 chr3R 8743190 intron CG9801 - chr3R 8743242 intron CG9801 - chr3R 8743295 intron CG9801 - chr3R_9_8740001 chr3R_8740001 RAL-136 970 chr3R 8932891 8932910 chr3R 8933115 8933143 7 230 4.5 8.0 6.2 1.0 252 chr3R 8932891 intergenic not near genes chr3R 8933017 intergenic not near genes chr3R 8933143 intergenic not near genes chr3R_7_8930001 chr3R_8930001 RAL-136 971 chr3R 9069505 9069513 chr3R 9069584 9069584 5 77 7.0 9.5 8.2 0.5 79 chr3R 9069505 3` UTR pum - chr3R 9069544 3` UTR pum - chr3R 9069584 3` UTR pum - chr3R_5_9065001 chr3R_9065001 RAL-136 972 chr3R 9085055 9085084 chr3R 9085376 9085411 6 324 8.5 9.5 9.0 0.6 356 chr3R 9085055 intron pum - chr3R 9085233 intron pum - chr3R 9085411 intron pum - chr3R_6_9085001 chr3R_9085001 RAL-136 973 chr3R 9117522 9117534 chr3R 9117611 9117621 4 88 15.5 10.5 13.0 0.3 99 chr3R 9117522 intron pum - chr3R 9117572 intron pum - chr3R 9117621 intron pum - chr3R_4_9115001 chr3R_9115001 RAL-136 974 chr3R 9146770 9146798 chr3R 9146852 9146882 7 77 10.5 11.0 10.8 0.6 112 chr3R 9146770 intron pum - chr3R 9146826 intron pum - chr3R 9146882 intron pum - chr3R_7_9145001 chr3R_9145001 RAL-136 975 chr3R 9204248 9204275 chr3R 9204334 9204343 4 78 14.0 11.0 12.5 0.3 95 chr3R 9204248 intron pum - chr3R 9204296 intron pum - chr3R 9204343 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-136 976 chr3R 9224778 9224797 chr3R 9224918 9224925 6 137 3.5 4.5 4.0 1.2 147 chr3R 9224778 intron pum - chr3R 9224852 intron pum - chr3R 9224925 intron pum - chr3R_6_9220001 chr3R_9220001 RAL-136 977 chr3R 9278785 9278808 chr3R 9284039 9284047 Rt1a 5 5250 3.0 2.0 2.5 1.4 5262 chr3R 9278785 intergenic not near genes chr3R 9281416 intergenic not near genes chr3R 9284047 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-136 978 chr3R 9319570 9319597 chr3R 9320005 9320029 jockey 5 431 4.5 2.5 3.5 1.1 459 chr3R 9319570 intron CG8861 - chr3R 9319800 intron CG8861 - chr3R 9320029 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-136 979 chr3R 9337418 9337449 chr3R 9337522 9337553 5 102 6.0 6.5 6.2 0.7 135 chr3R 9337418 3` UTR CG8121 + chr3R 9337486 intergenic CG8121 + chr3R 9337553 intergenic CG8121 + chr3R_5_9335001 chr3R_9335001 RAL-136 980 chr3R 9447445 9447461 chr3R 9447548 9447565 5 100 2.5 5.5 4.0 1.0 120 chr3R 9447445 intron ps + chr3R 9447505 intron ps + chr3R 9447565 intron ps + chr3R_5_9445001 chr3R_9445001 RAL-136 981 chr3R 9608657 9608689 chr3R 9608923 9608940 9 263 9.0 10.0 9.5 0.9 283 chr3R 9608657 intron CG8312 + chr3R 9608798 intron CG8312 + chr3R 9608940 intron CG8312 + chr3R_9_9605001 chr3R_9605001 RAL-136 982 chr3R 9699988 9700001 chr3R 9700063 9700089 1360 6 82 2.0 2.0 2.0 2.0 101 chr3R 9699988 intron Unc-115a - chr3R 9700038 intron Unc-115a - chr3R 9700089 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 RAL-136 983 chr3R 9836878 9836901 chr3R 9836957 9836979 5 83 10.5 13.0 11.8 0.4 101 chr3R 9836878 intron Teh1 - chr3R 9836928 intron Teh1 - chr3R 9836979 intron Teh1 - chr3R_5_9835001 chr3R_9835001 RAL-136 984 chr3R 9937097 9937101 chr3R 9937152 9937186 4 76 9.0 7.0 8.0 0.4 89 chr3R 9937097 intron Glut4EF + chr3R 9937142 intron Glut4EF + chr3R 9937186 intron Glut4EF + chr3R_4_9935001 chr3R_9935001 RAL-136 985 chr3R 9996305 9996326 chr3R 9996643 9996663 5 337 26.5 22.0 24.2 0.2 358 chr3R 9996305 exon Gr85a - chr3R 9996484 exon Gr85a - chr3R 9996663 exon Gr85a - chr3R_5_9995001 chr3R_9995001 RAL-136 986 chr3R 10045937 10045962 chr3R 10047523 10047541 8 1584 12.0 8.0 10.0 0.7 1604 chr3R 10045937 exon mtTFB2 + chr3R 10046739 intron mtTFB2 + chr3R 10047541 exon CG12811 - chr3R_8_10045001 chr3R_10045001 RAL-136 987 chr3R 10099923 10099938 chr3R 10100000 10100020 6 81 6.0 8.5 7.2 0.7 97 chr3R 10099923 5` UTR CR43459 + chr3R 10099972 5` UTR CR43459 + chr3R 10100020 5` UTR CR43459 + chr3R_6_10095001 chr3R_10095001 RAL-136 988 chr3R 10140432 10140464 chr3R 10140519 10140555 4 90 3.5 1.5 2.5 1.1 123 chr3R 10140432 3` UTR TAF1B - chr3R 10140494 3` UTR TAF1B - chr3R 10140555 3` UTR TAF1B - chr3R_4_10140001 chr3R_10140001 RAL-136 989 chr3R 10194428 10194444 chr3R 10194511 10194520 5 81 12.0 9.0 10.5 0.4 92 chr3R 10194428 intron Syn + chr3R 10194474 intron Syn + chr3R 10194520 intron Syn + chr3R_5_10190001 chr3R_10190001 RAL-136 990 chr3R 10208140 10208153 chr3R 10208387 10208398 4 248 5.0 16.5 10.8 0.3 258 chr3R 10208140 intron,intron Syn +,Timp - chr3R 10208269 intron,intron Syn +,Timp - chr3R 10208398 intron,intron Syn +,Timp - chr3R_4_10205001 chr3R_10205001 RAL-136 991 chr3R 10213495 10213502 chr3R 10213775 10213785 5 283 10.0 13.5 11.8 0.4 290 chr3R 10213495 intron Syn + chr3R 10213640 intron Syn + chr3R 10213785 intron Syn + chr3R_5_10210001 chr3R_10210001 RAL-136 992 chr3R 10231798 10231811 chr3R 10237368 10237388 mdg3 4 5575 1.0 2.5 1.8 1.4 5590 chr3R 10231798 intron CG42795 + chr3R 10234593 intron CG42795 + chr3R 10237388 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-136 993 chr3R 10277140 10277160 chr3R 10277220 10277240 4 80 4.0 4.0 4.0 0.8 100 chr3R 10277140 intron CG43143 + chr3R 10277190 intron CG43143 + chr3R 10277240 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-136 994 chr3R 10308368 10308394 chr3R 10308453 10308480 6 84 5.5 5.0 5.2 1.0 112 chr3R 10308368 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308424 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308480 3` UTR CG6293 - chr3R_6_10305001 chr3R_10305001 RAL-136 995 chr3R 10401899 10401912 chr3R 10402085 10402102 6 186 11.5 9.5 10.5 0.5 203 chr3R 10401899 exon mthl11 + chr3R 10402000 intron mthl11 + chr3R 10402102 exon mthl11 + chr3R_6_10400001 chr3R_10400001 RAL-136 996 chr3R 10423470 10423506 chr3R 10423551 10423587 8 81 9.5 8.0 8.8 0.8 117 chr3R 10423470 intergenic not near genes chr3R 10423528 intergenic not near genes chr3R 10423587 intergenic not near genes chr3R_8_10420001 chr3R_10420001 RAL-136 997 chr3R 10531874 10531894 chr3R 10531951 10531963 6 78 7.5 9.0 8.2 0.7 89 chr3R 10531874 intron hth - chr3R 10531918 intron hth - chr3R 10531963 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-136 998 chr3R 10594594 10594620 chr3R 10594679 10594705 10 84 19.5 20.0 19.8 0.5 111 chr3R 10594594 intron hth - chr3R 10594650 intron hth - chr3R 10594705 intron hth - chr3R_10_10590001 chr3R_10590001 RAL-136 999 chr3R 10919685 10919717 chr3R 10919762 10919794 14 76 2.5 4.0 3.2 3.3 109 chr3R 10919685 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_14_10915001 chr3R_10915001 RAL-136 1000 chr3R 10920048 10920078 chr3R 10920126 10920152 9 76 2.0 3.5 2.8 2.4 104 chr3R 10920048 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920152 intergenic not near genes chr3R_9_10920001 chr3R_10920001 RAL-136 1001 chr3R 10956019 10956034 chr3R 10956101 10956126 4 86 9.5 9.0 9.2 0.4 107 chr3R 10956019 intergenic not near genes chr3R 10956072 intergenic not near genes chr3R 10956126 intergenic not near genes chr3R_4_10955001 chr3R_10955001 RAL-136 1002 chr3R 11274503 11274508 chr3R 11274576 11274588 4 79 8.5 2.0 5.2 0.6 85 chr3R 11274503 intron CR31386 - chr3R 11274546 intron CR31386 - chr3R 11274588 intron CR31386 - chr3R_4_11270001 chr3R_11270001 RAL-136 1003 chr3R 11404941 11404965 chr3R 11405021 11405043 5 78 9.0 10.5 9.8 0.5 102 chr3R 11404941 3` UTR pros + chr3R 11404992 3` UTR pros + chr3R 11405043 3` UTR pros + chr3R_5_11400001 chr3R_11400001 RAL-136 1004 chr3R 11408760 11408783 chr3R 11408849 11408875 5 89 7.5 11.0 9.2 0.5 115 chr3R 11408760 intergenic mRpL40 +,mgr - chr3R 11408818 3` UTR mgr - chr3R 11408875 3` UTR mgr - chr3R_5_11405001 chr3R_11405001 RAL-136 1005 chr3R 11461280 11461295 chr3R 11461354 11461361 6 75 3.5 2.5 3.0 1.5 81 chr3R 11461280 intron CG17230 + chr3R 11461320 intron CG17230 + chr3R 11461361 intron CG17230 + chr3R_6_11460001 chr3R_11460001 RAL-136 1006 chr3R 11476950 11476967 chr3R 11477052 11477064 4 101 1.5 1.5 1.5 1.6 114 chr3R 11476950 intergenic not near genes chr3R 11477007 intergenic not near genes chr3R 11477064 intergenic not near genes chr3R_4_11475001 chr3R_11475001 RAL-136 1007 chr3R 11518816 11518845 chr3R 11518907 11518936 5 90 2.5 2.5 2.5 1.4 120 chr3R 11518816 intergenic not near genes chr3R 11518876 intergenic not near genes chr3R 11518936 intergenic not near genes chr3R_5_11515001 chr3R_11515001 RAL-136 1008 chr3R 11705284 11705293 chr3R 11705377 11705389 4 100 6.5 7.5 7.0 0.5 105 chr3R 11705284 intergenic I-t + chr3R 11705336 intergenic I-t + chr3R 11705389 intergenic I-t + chr3R_4_11705001 chr3R_11705001 RAL-136 1009 chr3R 11841064 11841099 chr3R 11846254 11846277 BS 12 5187 2.0 3.0 2.5 3.4 5213 chr3R 11841064 intron CG6959 - chr3R 11843670 intron CG6959 - chr3R 11846277 intron CG6959 - chr3R_12_11840001 chr3R_11840001 RAL-136 1010 chr3R 11881905 11881918 chr3R 11886618 11886633 5 4714 31.5 20.5 26.0 0.2 4728 chr3R 11881905 exon CG6962 - chr3R 11884269 intron,exon CG31368 +,mthl5 - chr3R 11886633 intron,exon CG31368 +,mthl5 - chr3R_5_11880001 chr3R_11880001 RAL-136 1011 chr3R 11914380 11914406 chr3R 11914464 11914491 5 81 4.5 5.0 4.8 0.9 111 chr3R 11914380 intron Cad87A - chr3R 11914436 intron Cad87A - chr3R 11914491 intron Cad87A - chr3R_5_11910001 chr3R_11910001 RAL-136 1012 chr3R 11919315 11919327 chr3R 11919403 11919415 5 86 10.0 10.5 10.2 0.4 100 chr3R 11919315 intron Cad87A - chr3R 11919365 intron Cad87A - chr3R 11919415 intron Cad87A - chr3R_5_11915001 chr3R_11915001 RAL-136 1013 chr3R 12022884 12022916 chr3R 12025061 12025093 pogo 10 2174 2.0 3.0 2.5 2.9 2209 chr3R 12022884 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025093 intergenic not near genes chr3R_10_12020001 chr3R_12020001 RAL-136 1014 chr3R 12056292 12056315 chr3R 12056377 12056382 7 81 15.5 12.5 14.0 0.5 90 chr3R 12056292 intergenic not near genes chr3R 12056337 intergenic not near genes chr3R 12056382 intergenic not near genes chr3R_7_12055001 chr3R_12055001 RAL-136 1015 chr3R 12158753 12158780 chr3R 12158842 12158877 5 94 13.5 13.0 13.2 0.4 124 chr3R 12158753 intergenic dpr15 - chr3R 12158815 intergenic dpr15 - chr3R 12158877 intergenic dpr15 - chr3R_5_12155001 chr3R_12155001 RAL-136 1016 chr3R 12348718 12348728 chr3R 12348798 12348808 4 80 10.0 11.0 10.5 0.3 90 chr3R 12348718 intergenic CG10038 - chr3R 12348763 intergenic CG10038 - chr3R 12348808 intergenic CG10038 - chr3R_4_12345001 chr3R_12345001 RAL-136 1017 chr3R 12348732 12348743 chr3R 12348797 12348819 4 74 8.0 10.5 9.2 0.4 87 chr3R 12348732 intergenic CG10038 - chr3R 12348776 intergenic CG10038 - chr3R 12348819 intergenic CG10038 - chr3R_4_12345001 chr3R_12345001 RAL-136 1018 chr3R 12565800 12565815 chr3R 12565989 12566001 4 188 11.0 11.5 11.2 0.3 201 chr3R 12565800 intron Octbeta2R - chr3R 12565900 intron Octbeta2R - chr3R 12566001 intron Octbeta2R - chr3R_4_12565001 chr3R_12565001 RAL-136 1019 chr3R 12726441 12726468 chr3R 12726538 12726557 6 95 8.0 7.5 7.8 0.7 116 chr3R 12726441 intergenic not near genes chr3R 12726499 intergenic not near genes chr3R 12726557 intergenic not near genes chr3R_6_12725001 chr3R_12725001 RAL-136 1020 chr3R 12729531 12729556 chr3R 12729636 12729661 5 103 5.0 6.5 5.8 0.7 130 chr3R 12729531 intergenic not near genes chr3R 12729596 intergenic not near genes chr3R 12729661 intergenic not near genes chr3R_5_12725001 chr3R_12725001 RAL-136 1021 chr3R 12733479 12733509 chr3R 12733554 12733567 6 71 9.0 8.5 8.8 0.6 88 chr3R 12733479 intergenic not near genes chr3R 12733523 intergenic not near genes chr3R 12733567 intergenic not near genes chr3R_6_12730001 chr3R_12730001 RAL-136 1022 chr3R 12745239 12745260 chr3R 12745319 12745344 5 79 9.5 11.5 10.5 0.4 105 chr3R 12745239 intergenic not near genes chr3R 12745292 intergenic not near genes chr3R 12745344 intergenic not near genes chr3R_5_12745001 chr3R_12745001 RAL-136 1023 chr3R 12819028 12819050 chr3R 12819111 12819124 4 80 1.5 1.5 1.5 1.6 96 chr3R 12819028 intergenic not near genes chr3R 12819076 intergenic not near genes chr3R 12819124 intergenic not near genes chr3R_4_12815001 chr3R_12815001 RAL-136 1024 chr3R 12858745 12858755 chr3R 12858825 12858836 4 81 8.0 6.0 7.0 0.5 91 chr3R 12858745 intron CG10126 - chr3R 12858790 intron CG10126 - chr3R 12858836 intron CG10126 - chr3R_4_12855001 chr3R_12855001 RAL-136 1025 chr3R 12866489 12866515 chr3R 12866640 12866665 6 148 8.5 3.5 6.0 0.9 176 chr3R 12866489 intergenic not near genes chr3R 12866577 intergenic not near genes chr3R 12866665 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-136 1026 chr3R 12883794 12883812 chr3R 12883912 12883930 5 117 12.5 4.5 8.5 0.5 136 chr3R 12883794 intergenic not near genes chr3R 12883862 intergenic not near genes chr3R 12883930 intergenic not near genes chr3R_5_12880001 chr3R_12880001 RAL-136 1027 chr3R 12920170 12920186 chr3R 12925354 12925387 copia 7 5192 4.5 2.5 3.5 1.6 5217 chr3R 12920170 intron beat-Vb + chr3R 12922778 intron beat-Vb + chr3R 12925387 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-136 1028 chr3R 12916315 12916331 chr3R 12925592 12925622 copia 5 9280 11.5 22.0 16.8 0.3 9307 chr3R 12916315 intron beat-Vb + chr3R 12920968 intron beat-Vb + chr3R 12925622 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-136 1029 chr3R 12943987 12944011 chr3R 12944065 12944081 6 79 5.0 6.0 5.5 0.9 94 chr3R 12943987 intergenic not near genes chr3R 12944034 intergenic not near genes chr3R 12944081 intergenic not near genes chr3R_6_12940001 chr3R_12940001 RAL-136 1030 chr3R 13075365 13075383 chr3R 13075441 13075453 4 77 2.5 2.0 2.2 1.2 88 chr3R 13075365 intron sim + chr3R 13075409 intron sim + chr3R 13075453 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-136 1031 chr3R 13079616 13079647 chr3R 13079811 13079839 7 193 7.5 7.5 7.5 0.8 223 chr3R 13079616 intergenic not near genes chr3R 13079728 intergenic not near genes chr3R 13079839 intergenic not near genes chr3R_7_13075001 chr3R_13075001 RAL-136 1032 chr3R 13104419 13104420 chr3R 21907534 21907536 12 8803116 19.0 21.0 20.0 0.6 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_12_17505001 chr3R_17505001 RAL-136 1033 chr3R 13120786 13120799 chr3R 13120849 13120865 8 70 3.5 2.0 2.8 2.1 79 chr3R 13120786 intron timeout + chr3R 13120826 intron timeout + chr3R 13120865 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-136 1034 chr3R 13135836 13135849 chr3R 13138007 13138024 pogo 7 2174 3.0 5.0 4.0 1.4 2188 chr3R 13135836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138024 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-136 1035 chr3R 13143052 13143066 chr3R 13148622 13148624 mdg3 6 5567 4.0 8.0 6.0 0.9 5572 chr3R 13143052 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145838 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148624 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-136 1036 chr3R 13195951 13195982 chr3R 13196046 13196070 8 90 19.5 19.5 19.5 0.4 119 chr3R 13195951 intergenic not near genes chr3R 13196010 intergenic not near genes chr3R 13196070 intergenic not near genes chr3R_8_13195001 chr3R_13195001 RAL-136 1037 chr3R 13359039 13359062 chr3R 13359157 13359175 6 112 9.0 7.0 8.0 0.7 136 chr3R 13359039 intergenic not near genes chr3R 13359107 intergenic not near genes chr3R 13359175 intergenic not near genes chr3R_6_13355001 chr3R_13355001 RAL-136 1038 chr3R 13391272 13391290 chr3R 13391359 13391368 4 84 9.5 10.0 9.8 0.4 96 chr3R 13391272 intron CCHa2 - chr3R 13391320 intron CCHa2 - chr3R 13391368 intron CCHa2 - chr3R_4_13390001 chr3R_13390001 RAL-136 1039 chr3R 13496321 13496328 chr3R 13496394 13496400 5 76 11.0 10.0 10.5 0.4 79 chr3R 13496321 intergenic not near genes chr3R 13496360 intergenic not near genes chr3R 13496400 intergenic not near genes chr3R_5_13495001 chr3R_13495001 RAL-136 1040 chr3R 13552298 13552323 chr3R 13552390 13552404 7 90 3.0 5.5 4.2 1.3 106 chr3R 13552298 intergenic not near genes chr3R 13552351 intergenic not near genes chr3R 13552404 intergenic not near genes chr3R_7_13550001 chr3R_13550001 RAL-136 1041 chr3R 13693028 13693028 chr3R 21907534 21907536 12 8214507 7.0 21.0 14.0 0.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_12_17800001 chr3R_17800001 RAL-136 1042 chr3R 13923445 13923464 chr3R 13923520 13923520 8 74 8.0 14.0 11.0 0.7 75 chr3R 13923445 intergenic not near genes chr3R 13923482 intergenic not near genes chr3R 13923520 intergenic not near genes chr3R_8_13920001 chr3R_13920001 RAL-136 1043 chr3R 13977676 13977694 chr3R 13977765 13977773 7 89 10.0 7.5 8.8 0.7 97 chr3R 13977676 intron rdx - chr3R 13977724 intron rdx - chr3R 13977773 intron rdx - chr3R_7_13975001 chr3R_13975001 RAL-136 1044 chr3R 14014279 14014303 chr3R 14014403 14014433 4 126 1.5 0.0 0.8 2.2 154 chr3R 14014279 intron rdx - chr3R 14014356 intron rdx - chr3R 14014433 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-136 1045 chr3R 14062846 14062876 chr3R 14062923 14062953 4 77 5.5 5.5 5.5 0.6 107 chr3R 14062846 intron foxo + chr3R 14062900 intron foxo + chr3R 14062953 intron foxo + chr3R_4_14060001 chr3R_14060001 RAL-136 1046 chr3R 14246410 14246418 chr3R 14247906 14247914 jockey 4 1495 3.0 6.5 4.8 0.7 1504 chr3R 14246410 intergenic not near genes chr3R 14247162 intergenic not near genes chr3R 14247914 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-136 1047 chr3R 14458754 14458909 chr3R 14458827 14458975 4 70 8.5 4.0 6.2 0.6 221 chr3R 14458754 intron cv-c - chr3R 14458864 intron cv-c - chr3R 14458975 intron cv-c - chr3R_4_14455001 chr3R_14455001 RAL-136 1048 chr3R 14577960 14577985 chr3R 14578076 14578099 5 114 5.0 5.5 5.2 0.8 139 chr3R 14577960 intron stumps + chr3R 14578030 intron stumps + chr3R 14578099 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-136 1049 chr3R 14579212 14579377 chr3R 14579302 14579466 6 88 6.5 13.5 10.0 0.5 254 chr3R 14579212 intron stumps + chr3R 14579339 intron stumps + chr3R 14579466 intron stumps + chr3R_6_14575001 chr3R_14575001 RAL-136 1050 chr3R 14617034 14617057 chr3R 14617110 14617133 5 75 4.0 2.5 3.2 1.2 99 chr3R 14617034 intron CG14853 + chr3R 14617084 intron CG14853 + chr3R 14617133 intron CG14853 + chr3R_5_14615001 chr3R_14615001 RAL-136 1051 chr3R 14662317 14662333 chr3R 14662395 14662414 4 80 11.5 9.0 10.2 0.4 97 chr3R 14662317 intron Rad17 - chr3R 14662366 intron Rad17 - chr3R 14662414 exon Rad17 - chr3R_4_14660001 chr3R_14660001 RAL-136 1052 chr3R 14682059 14682082 chr3R 14682161 14682187 5 104 10.0 10.0 10.0 0.5 128 chr3R 14682059 intron Meltrin - chr3R 14682123 intron Meltrin - chr3R 14682187 intron Meltrin - chr3R_5_14680001 chr3R_14680001 RAL-136 1053 chr3R 14685789 14685813 chr3R 14685867 14685886 4 74 17.0 12.0 14.5 0.3 97 chr3R 14685789 intron Meltrin - chr3R 14685838 intron Meltrin - chr3R 14685886 intron Meltrin - chr3R_4_14685001 chr3R_14685001 RAL-136 1054 chr3R 14704402 14704418 chr3R 14704467 14704494 5 65 7.5 7.0 7.2 0.6 92 chr3R 14704402 intron kibra - chr3R 14704448 intron kibra - chr3R 14704494 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-136 1055 chr3R 15087766 15087797 chr3R 15087850 15087882 4 84 11.0 13.0 12.0 0.3 116 chr3R 15087766 intron CG6966 - chr3R 15087824 intron CG6966 - chr3R 15087882 intron CG6966 - chr3R_4_15085001 chr3R_15085001 RAL-136 1056 chr3R 15112993 15113013 chr3R 15113092 15113106 4 97 4.0 3.5 3.8 0.8 113 chr3R 15112993 intron CG42788 - chr3R 15113050 intron CG42788 - chr3R 15113106 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-136 1057 chr3R 15114915 15114947 chr3R 15114991 15115016 5 73 0.5 1.5 1.0 2.5 101 chr3R 15114915 intron CG42788 - chr3R 15114966 intron CG42788 - chr3R 15115016 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-136 1058 chr3R 15132061 15132076 chr3R 15135118 15135136 Juan 5 3058 7.0 11.0 9.0 0.5 3075 chr3R 15132061 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135136 intergenic CG6912 - chr3R_5_15130001 chr3R_15130001 RAL-136 1059 chr3R 15132077 15132082 chr3R 15135115 15135142 Juan 4 3054 5.5 11.0 8.2 0.4 3065 chr3R 15132077 intergenic CG42788 - chr3R 15133610 intergenic not near genes chr3R 15135142 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-136 1060 chr3R 15162543 15162561 chr3R 15167311 15167317 F-element 4 4764 3.0 0.0 1.5 1.6 4774 chr3R 15162543 intron Gyc88E + chr3R 15164930 intron Gyc88E + chr3R 15167317 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-136 1061 chr3R 15601166 15601194 chr3R 15608688 15608716 412 10 7520 7.5 8.5 8.0 1.1 7550 chr3R 15601166 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-136 1062 chr3R 15608794 15608817 chr3R 15609020 15609044 5 226 5.5 9.5 7.5 0.6 250 chr3R 15608794 intergenic not near genes chr3R 15608919 intergenic not near genes chr3R 15609044 intergenic not near genes chr3R_5_15605001 chr3R_15605001 RAL-136 1063 chr3R 15676553 15676578 chr3R 15676632 15676655 5 75 8.0 7.0 7.5 0.6 102 chr3R 15676553 intron pxb + chr3R 15676604 intron pxb + chr3R 15676655 intron pxb + chr3R_5_15675001 chr3R_15675001 RAL-136 1064 chr3R 15697439 15697466 chr3R 15697531 15697557 7 89 11.0 12.0 11.5 0.6 118 chr3R 15697439 5` UTR CR45635 + chr3R 15697498 5` UTR CR45635 + chr3R 15697557 5` UTR CR45635 + chr3R_7_15695001 chr3R_15695001 RAL-136 1065 chr3R 15716852 15716874 chr3R 15716944 15716965 6 94 6.5 8.5 7.5 0.7 113 chr3R 15716852 intergenic CG31294 - chr3R 15716908 intergenic CG31294 - chr3R 15716965 intergenic CG31294 - chr3R_6_15715001 chr3R_15715001 RAL-136 1066 chr3R 15790157 15790289 chr3R 15790242 15790407 7 106 2.0 6.5 4.2 1.3 250 chr3R 15790157 exon c(3)G - chr3R 15790282 exon c(3)G - chr3R 15790407 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-136 1067 chr3R 15790836 15790864 chr3R 15790952 15790971 7 114 9.5 13.5 11.5 0.6 135 chr3R 15790836 exon c(3)G - chr3R 15790904 intron c(3)G - chr3R 15790971 exon c(3)G - chr3R_7_15790001 chr3R_15790001 RAL-136 1068 chr3R 15947140 15947160 chr3R 15947216 15947236 4 77 6.0 5.5 5.8 0.6 96 chr3R 15947140 intron Sap47 + chr3R 15947188 intron Sap47 + chr3R 15947236 intron Sap47 + chr3R_4_15945001 chr3R_15945001 RAL-136 1069 chr3R 15947675 15947696 chr3R 15947756 15947777 4 72 4.5 6.0 5.2 0.6 102 chr3R 15947675 intron Sap47 + chr3R 15947726 intron Sap47 + chr3R 15947777 intron Sap47 + chr3R_4_15945001 chr3R_15945001 RAL-136 1070 chr3R 15984504 15984534 chr3R 15984606 15984636 4 97 3.0 7.5 5.2 0.6 132 chr3R 15984504 intergenic not near genes chr3R 15984570 intergenic not near genes chr3R 15984636 intergenic not near genes chr3R_4_15980001 chr3R_15980001 RAL-136 1071 chr3R 16368464 16368487 chr3R 16368535 16368559 7 76 7.5 7.5 7.5 0.8 95 chr3R 16368464 intergenic CG14880 -,CG10317 - chr3R 16368512 intergenic CG14880 -,CG10317 - chr3R 16368559 intergenic CG14880 -,CG10317 - chr3R_7_16365001 chr3R_16365001 RAL-136 1072 chr3R 16545092 16545100 chr3R 16545162 16545181 5 76 9.5 9.5 9.5 0.5 89 chr3R 16545092 intron CG42342 + chr3R 16545136 intron CG42342 + chr3R 16545181 intron CG42342 + chr3R_5_16545001 chr3R_16545001 RAL-136 1073 chr3R 16756317 16756354 chr3R 16762508 16762524 diver 15 6187 3.0 0.5 1.8 5.4 6207 chr3R 16756317 intron bxd - chr3R 16759420 intron bxd - chr3R 16762524 intron bxd - chr3R_15_16755001 chr3R_16755001 RAL-136 1074 chr3R 16803478 16803487 chr3R 16803535 16803539 4 57 5.0 5.0 5.0 0.7 61 chr3R 16803478 intergenic not near genes chr3R 16803508 intergenic not near genes chr3R 16803539 intergenic not near genes chr3R_4_16800001 chr3R_16800001 RAL-136 1075 chr3R 17294677 17294689 chr3R 17295105 17295111 BS 5 425 2.5 2.5 2.5 1.4 434 chr3R 17294677 intergenic not near genes chr3R 17294894 intergenic not near genes chr3R 17295111 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-136 1076 chr3R 17415982 17415989 chr3R 17416060 17416066 4 78 16.0 13.5 14.8 0.3 84 chr3R 17415982 exon CG5866 + chr3R 17416024 exon CG5866 + chr3R 17416066 exon CG5866 + chr3R_4_17415001 chr3R_17415001 RAL-136 1077 chr3R 17521580 17521588 chr3R 17521740 17521746 4 158 5.5 15.0 10.2 0.4 166 chr3R 17521580 intergenic not near genes chr3R 17521663 intergenic not near genes chr3R 17521746 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-136 1078 chr3R 17571587 17571604 chr3R 17571664 17571685 4 76 5.0 4.0 4.5 0.7 98 chr3R 17571587 intergenic not near genes chr3R 17571636 intergenic not near genes chr3R 17571685 intergenic not near genes chr3R_4_17570001 chr3R_17570001 RAL-136 1079 chr3R 17591300 17591318 chr3R 17591723 17591749 F-element 5 422 5.5 3.0 4.2 1.0 449 chr3R 17591300 intergenic not near genes chr3R 17591524 intergenic not near genes chr3R 17591749 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-136 1080 chr3R 17653087 17653114 chr3R 17653177 17653180 7 86 1.0 2.5 1.8 2.5 93 chr3R 17653087 intron,intron CG14322 +,CR45223 - chr3R 17653134 intron,intron CG14322 +,CR45223 - chr3R 17653180 intron,intron CG14322 +,CR45223 - chr3R_7_17650001 chr3R_17650001 RAL-136 1081 chr3R 17773376 17773388 chr3R 17773471 17773483 4 95 8.0 12.0 10.0 0.4 107 chr3R 17773376 intron CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773483 exon CG43102 - chr3R_4_17770001 chr3R_17770001 RAL-136 1082 chr3R 17842069 17842092 chr3R 17842373 17842384 6 303 4.0 0.0 2.0 2.0 315 chr3R 17842069 intron tinc + chr3R 17842226 intron tinc + chr3R 17842384 intron tinc + chr3R_6_17840001 chr3R_17840001 RAL-136 1083 chr3R 17853896 17853910 chr3R 17855742 17855764 5 1852 2.0 5.5 3.8 1.0 1868 chr3R 17853896 intron tinc + chr3R 17854830 intron tinc + chr3R 17855764 intron tinc + chr3R_5_17850001 chr3R_17850001 RAL-136 1084 chr3R 17858060 17858083 chr3R 17858152 17858175 4 90 8.0 7.5 7.8 0.5 115 chr3R 17858060 intron tinc + chr3R 17858118 intron tinc + chr3R 17858175 intron tinc + chr3R_4_17855001 chr3R_17855001 RAL-136 1085 chr3R 17881888 17881901 chr3R 17881981 17881994 4 92 7.0 8.0 7.5 0.5 106 chr3R 17881888 exon Rim - chr3R 17881941 intron Rim - chr3R 17881994 intron Rim - chr3R_4_17880001 chr3R_17880001 RAL-136 1086 chr3R 17912828 17912846 chr3R 17912908 17912927 6 77 10.0 11.5 10.8 0.5 99 chr3R 17912828 intron Rim - chr3R 17912878 intron Rim - chr3R 17912927 intron Rim - chr3R_6_17910001 chr3R_17910001 RAL-136 1087 chr3R 17925866 17925877 chr3R 17927333 17927335 hobo 4 1464 3.0 8.0 5.5 0.6 1469 chr3R 17925866 intron cpo + chr3R 17926600 intron cpo + chr3R 17927335 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-136 1088 chr3R 17983210 17983235 chr3R 17983286 17983296 4 72 5.5 7.0 6.2 0.6 86 chr3R 17983210 intron cpo + chr3R 17983253 intron cpo + chr3R 17983296 intron cpo + chr3R_4_17980001 chr3R_17980001 RAL-136 1089 chr3R 18025342 18025364 chr3R 18025412 18025445 5 79 4.0 4.5 4.2 1.0 103 chr3R 18025342 3` UTR CG7794 + chr3R 18025394 intergenic CG7794 + chr3R 18025445 intergenic CG7794 + chr3R_5_18025001 chr3R_18025001 RAL-136 1090 chr3R 18109050 18109303 chr3R 18109110 18109393 8 83 8.5 3.0 5.8 1.2 343 chr3R 18109050 intron sr + chr3R 18109222 intron sr + chr3R 18109393 intron sr + chr3R_8_18105001 chr3R_18105001 RAL-136 1091 chr3R 18306997 18307021 chr3R 18307086 18307112 6 88 2.5 2.5 2.5 1.7 115 chr3R 18306997 exon PKD - chr3R 18307054 intron PKD - chr3R 18307112 intron PKD - chr3R_6_18305001 chr3R_18305001 RAL-136 1092 chr3R 18394474 18394490 chr3R 18394550 18394561 4 75 10.5 8.0 9.2 0.4 87 chr3R 18394474 intron Vha100-2 - chr3R 18394518 intron Vha100-2 - chr3R 18394561 intron Vha100-2 - chr3R_4_18390001 chr3R_18390001 RAL-136 1093 chr3R 18743526 18743560 chr3R 18743605 18743639 4 79 9.5 9.0 9.2 0.4 113 chr3R 18743526 5` UTR Mekk1 - chr3R 18743582 5` UTR Mekk1 - chr3R 18743639 intergenic Mekk1 -,CG7718 - chr3R_4_18740001 chr3R_18740001 RAL-136 1094 chr3R 18787335 18787355 chr3R 18787418 18787437 7 81 2.0 5.5 3.8 1.5 102 chr3R 18787335 intron CG7720 - chr3R 18787386 intron CG7720 - chr3R 18787437 intron CG7720 - chr3R_7_18785001 chr3R_18785001 RAL-136 1095 chr3R 18788755 18788774 chr3R 18788825 18788851 6 75 10.5 8.5 9.5 0.6 96 chr3R 18788755 intron CG7720 - chr3R 18788803 intron CG7720 - chr3R 18788851 intron CG7720 - chr3R_6_18785001 chr3R_18785001 RAL-136 1096 chr3R 18812078 18812109 chr3R 18812154 18812182 12 75 7.0 9.0 8.0 1.3 104 chr3R 18812078 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812182 intron CG18208 - chr3R_12_18810001 chr3R_18810001 RAL-136 1097 chr3R 18915940 18915969 chr3R 18916094 18916123 5 154 11.5 6.0 8.8 0.5 183 chr3R 18915940 intron Xrp1 + chr3R 18916032 intron Xrp1 + chr3R 18916123 intron Xrp1 + chr3R_5_18915001 chr3R_18915001 RAL-136 1098 chr3R 18939907 18939938 chr3R 18939997 18940019 5 85 10.5 9.5 10.0 0.5 112 chr3R 18939907 intron CG42613 + chr3R 18939963 intron CG42613 + chr3R 18940019 intron CG42613 + chr3R_5_18935001 chr3R_18935001 RAL-136 1099 chr3R 19008375 19008404 chr3R 19008457 19008479 5 79 5.0 1.5 3.2 1.2 104 chr3R 19008375 intron gukh + chr3R 19008427 intron gukh + chr3R 19008479 intron gukh + chr3R_5_19005001 chr3R_19005001 RAL-136 1100 chr3R 19033929 19033961 chr3R 19034003 19034039 5 71 7.0 7.0 7.0 0.6 110 chr3R 19033929 intron CG6026 + chr3R 19033984 intron CG6026 + chr3R 19034039 intron CG6026 + chr3R_5_19030001 chr3R_19030001 RAL-136 1101 chr3R 19140279 19140296 chr3R 19140721 19140741 5 442 2.5 9.0 5.8 0.7 462 chr3R 19140279 3` UTR Ppcs - chr3R 19140510 3` UTR Ppcs - chr3R 19140741 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-136 1102 chr3R 19193002 19193014 chr3R 19197293 19197318 F-element 6 4298 0.5 3.0 1.8 2.1 4316 chr3R 19193002 intron CG31475 + chr3R 19195160 intron CG31475 + chr3R 19197318 intron CG31475 + chr3R_6_19195001 chr3R_19195001 RAL-136 1103 chr3R 19253293 19253324 chr3R 19253392 19253415 6 93 7.5 3.5 5.5 0.9 122 chr3R 19253293 intergenic not near genes chr3R 19253354 intergenic not near genes chr3R 19253415 intergenic not near genes chr3R_6_19250001 chr3R_19250001 RAL-136 1104 chr3R 19422677 19422701 chr3R 19422767 19422791 4 90 2.0 4.5 3.2 1.0 114 chr3R 19422677 intron CG31221 + chr3R 19422734 intron CG31221 + chr3R 19422791 intron CG31221 + chr3R_4_19420001 chr3R_19420001 RAL-136 1105 chr3R 19490444 19490467 chr3R 19490533 19490556 7 87 7.0 9.0 8.0 0.8 112 chr3R 19490444 intron,intron Dys +,CG15025 - chr3R 19490500 intron,intron Dys +,CG15025 - chr3R 19490556 intron,intron Dys +,CG15025 - chr3R_7_19490001 chr3R_19490001 RAL-136 1106 chr3R 19604677 19604706 chr3R 19604809 19604839 6 132 4.0 4.0 4.0 1.2 162 chr3R 19604677 exon CG7342 + chr3R 19604758 intron CG7342 + chr3R 19604839 intron CG7342 + chr3R_6_19600001 chr3R_19600001 RAL-136 1107 chr3R 19702323 19702339 chr3R 19702405 19702421 4 82 2.0 2.5 2.2 1.2 98 chr3R 19702323 intergenic not near genes chr3R 19702372 intergenic not near genes chr3R 19702421 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-136 1108 chr3R 19750045 19750068 chr3R 19750125 19750148 5 80 7.5 6.0 6.8 0.6 103 chr3R 19750045 intron GluClalpha + chr3R 19750096 intron GluClalpha + chr3R 19750148 intron GluClalpha + chr3R_5_19750001 chr3R_19750001 RAL-136 1109 chr3R 20041119 20041148 chr3R 20041215 20041250 9 94 10.0 7.5 8.8 0.9 131 chr3R 20041119 intron CG17193 - chr3R 20041184 intron CG17193 - chr3R 20041250 intron CG17193 - chr3R_9_20040001 chr3R_20040001 RAL-136 1110 chr3R 20109550 20109566 chr3R 20114742 20114770 copia 5 5197 2.0 0.5 1.2 2.3 5220 chr3R 20109550 intergenic not near genes chr3R 20112160 intergenic not near genes chr3R 20114770 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-136 1111 chr3R 20124578 20124601 chr3R 20124665 20124686 5 86 4.5 4.0 4.2 1.0 108 chr3R 20124578 intergenic not near genes chr3R 20124632 intergenic not near genes chr3R 20124686 intergenic not near genes chr3R_5_20120001 chr3R_20120001 RAL-136 1112 chr3R 20156693 20156714 chr3R 20165858 20165862 roo 4 9158 3.5 0.5 2.0 1.3 9169 chr3R 20156693 intergenic not near genes chr3R 20161278 intergenic not near genes chr3R 20165862 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-136 1113 chr3R 20195226 20195257 chr3R 20195311 20195329 5 80 7.0 12.5 9.8 0.5 103 chr3R 20195226 intergenic not near genes chr3R 20195278 intergenic not near genes chr3R 20195329 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-136 1114 chr3R 20197128 20197149 chr3R 20197193 20197226 6 70 9.5 7.5 8.5 0.6 98 chr3R 20197128 intergenic not near genes chr3R 20197177 intergenic not near genes chr3R 20197226 intergenic not near genes chr3R_6_20195001 chr3R_20195001 RAL-136 1115 chr3R 20266521 20266542 chr3R 20272992 20273010 Burdock 6 6469 0.5 2.0 1.2 2.7 6489 chr3R 20266521 intron cic + chr3R 20269766 intron cic + chr3R 20273010 intron cic + chr3R_6_20265001 chr3R_20265001 RAL-136 1116 chr3R 20467096 20467109 chr3R 20467153 20467185 4 67 1.5 1.0 1.2 1.8 89 chr3R 20467096 intron Gfrl - chr3R 20467140 intron Gfrl - chr3R 20467185 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-136 1117 chr3R 20506601 20506616 chr3R 20507404 20507416 BS 4 800 0.5 5.5 3.0 1.0 815 chr3R 20506601 intergenic Or92a + chr3R 20507008 intergenic CG4288 - chr3R 20507416 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-136 1118 chr3R 20555531 20555537 chr3R 20555821 20555846 4 298 14.5 11.0 12.8 0.3 315 chr3R 20555531 intron att-ORFA - chr3R 20555688 intron att-ORFA - chr3R 20555846 intron att-ORFA - chr3R_4_20555001 chr3R_20555001 RAL-136 1119 chr3R 20663710 20663737 chr3R 20663814 20663840 4 103 7.5 7.5 7.5 0.5 130 chr3R 20663710 intergenic not near genes chr3R 20663775 intergenic not near genes chr3R 20663840 intergenic not near genes chr3R_4_20660001 chr3R_20660001 RAL-136 1120 chr3R 20733763 20733793 chr3R 20733853 20733867 6 86 14.0 12.5 13.2 0.4 104 chr3R 20733763 intergenic not near genes chr3R 20733815 intergenic not near genes chr3R 20733867 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-136 1121 chr3R 20771712 20771730 chr3R 20771792 20771797 5 77 0.0 4.0 2.0 1.7 85 chr3R 20771712 intron,intron Syp +,Takl1 - chr3R 20771754 intron,intron Syp +,Takl1 - chr3R 20771797 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-136 1122 chr3R 20865774 20865805 chr3R 20865853 20865883 6 79 4.0 4.0 4.0 1.2 109 chr3R 20865774 intron CG3822 - chr3R 20865828 intron CG3822 - chr3R 20865883 intron CG3822 - chr3R_6_20865001 chr3R_20865001 RAL-136 1123 chr3R 20870249 20870280 chr3R 20870334 20870365 10 84 5.0 2.0 3.5 2.2 116 chr3R 20870249 intergenic not near genes chr3R 20870307 intergenic not near genes chr3R 20870365 intergenic not near genes chr3R_10_20870001 chr3R_20870001 RAL-136 1124 chr3R 20901657 20901686 chr3R 20901760 20901763 7 97 3.5 4.5 4.0 1.4 106 chr3R 20901657 intergenic CG5621 + chr3R 20901710 intergenic CG5621 + chr3R 20901763 intergenic CG5621 + chr3R_7_20900001 chr3R_20900001 RAL-136 1125 chr3R 20942814 20942834 chr3R 20942885 20942910 8 72 7.5 8.0 7.8 0.9 96 chr3R 20942814 intron CG31191 - chr3R 20942862 intron CG31191 - chr3R 20942910 intron CG31191 - chr3R_8_20940001 chr3R_20940001 RAL-136 1126 chr3R 20947081 20947104 chr3R 20947379 20947399 5 299 7.0 8.5 7.8 0.6 318 chr3R 20947081 intergenic not near genes chr3R 20947240 intergenic not near genes chr3R 20947399 intergenic not near genes chr3R_5_20945001 chr3R_20945001 RAL-136 1127 chr3R 21141685 21141706 chr3R 21150155 21150168 Tirant 9 8467 2.5 4.5 3.5 2.0 8483 chr3R 21141685 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150168 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-136 1128 chr3R 21154549 21154583 chr3R 21154754 21154798 6 208 3.0 0.0 1.5 2.4 249 chr3R 21154549 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_6_21150001 chr3R_21150001 RAL-136 1129 chr3R 21240447 21240475 chr3R 21240539 21240554 9 86 2.5 4.0 3.2 2.1 107 chr3R 21240447 intergenic not near genes chr3R 21240500 intergenic not near genes chr3R 21240554 intergenic not near genes chr3R_9_21240001 chr3R_21240001 RAL-136 1130 chr3R 21293207 21293225 chr3R 21293313 21293334 4 107 4.5 3.0 3.8 0.8 127 chr3R 21293207 intron SIFaR - chr3R 21293270 intron SIFaR - chr3R 21293334 intron SIFaR - chr3R_4_21290001 chr3R_21290001 RAL-136 1131 chr3R 21553608 21553646 chr3R 21553740 21553771 4 129 9.5 6.5 8.0 0.4 163 chr3R 21553608 intron slou - chr3R 21553690 intron slou - chr3R 21553771 intron slou - chr3R_4_21550001 chr3R_21550001 RAL-136 1132 chr3R 21586425 21586451 chr3R 21586509 21586535 7 82 7.0 8.5 7.8 0.8 110 chr3R 21586425 intron InR - chr3R 21586480 intron InR - chr3R 21586535 intron InR - chr3R_7_21585001 chr3R_21585001 RAL-136 1133 chr3R 21624104 21624120 chr3R 21624197 21624203 6 90 2.0 2.5 2.2 1.9 99 chr3R 21624104 intron E2f - chr3R 21624154 intron E2f - chr3R 21624203 intron E2f - chr3R_6_21620001 chr3R_21620001 RAL-136 1134 chr3R 21759881 21759896 chr3R 21759991 21760006 4 108 16.5 11.0 13.8 0.3 125 chr3R 21759881 exon CG42335 + chr3R 21759944 exon CG42335 + chr3R 21760006 exon CG42335 + chr3R_4_21755001 chr3R_21755001 RAL-136 1135 chr3R 21761129 21761154 chr3R 21768517 21768527 mdg1 11 7386 3.0 4.5 3.8 2.3 7398 chr3R 21761129 exon CG42335 + chr3R 21764828 intron CG42335 + chr3R 21768527 exon CG42335 + chr3R_11_21760001 chr3R_21760001 RAL-136 1136 chr3R 21811834 21811860 chr3R 21811956 21811986 7 122 11.0 12.5 11.8 0.5 152 chr3R 21811834 intron CASK - chr3R 21811910 intron CASK - chr3R 21811986 intron CASK - chr3R_7_21810001 chr3R_21810001 RAL-136 1137 chr3R 21907534 21907534 chr3R 28831801 28831802 7 6924268 23.5 17.5 20.5 0.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_7_25365001 chr3R_25365001 RAL-136 1138 chr3R 21907535 21907535 chr3R 28831801 28831802 21 6924266 24.0 17.5 20.8 1.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 RAL-136 1139 chr3R 21907536 21907536 chr3R 28831801 28831802 16 6924266 24.5 17.5 21.0 0.7 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-136 1140 chr3R 21928970 21929000 chr3R 21929061 21929088 5 89 4.5 8.5 6.5 0.7 118 chr3R 21928970 intergenic not near genes chr3R 21929029 intergenic not near genes chr3R 21929088 intergenic not near genes chr3R_5_21925001 chr3R_21925001 RAL-136 1141 chr3R 22225515 22225541 chr3R 22225938 22225949 9 421 10.0 7.0 8.5 0.9 434 chr3R 22225515 intron SKIP + chr3R 22225732 intron SKIP + chr3R 22225949 intron SKIP + chr3R_9_22225001 chr3R_22225001 RAL-136 1142 chr3R 22234694 22234710 chr3R 22236006 22236029 pogo 4 1316 4.0 2.0 3.0 1.0 1335 chr3R 22234694 intron SKIP + chr3R 22235362 intron SKIP + chr3R 22236029 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-136 1143 chr3R 22286143 22286163 chr3R 22286220 22286237 5 72 2.0 5.5 3.8 1.0 94 chr3R 22286143 intron SKIP + chr3R 22286190 intron SKIP + chr3R 22286237 intron SKIP + chr3R_5_22285001 chr3R_22285001 RAL-136 1144 chr3R 22320542 22320565 chr3R 22320610 22320638 5 75 6.5 7.5 7.0 0.6 96 chr3R 22320542 intron CG34377 - chr3R 22320590 intron CG34377 - chr3R 22320638 intron CG34377 - chr3R_5_22320001 chr3R_22320001 RAL-136 1145 chr3R 22450543 22450578 chr3R 22453181 22453213 NOF 12 2636 1.0 4.0 2.5 3.4 2670 chr3R 22450543 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453213 intron CG34376 + chr3R_12_22450001 chr3R_22450001 RAL-136 1146 chr3R 22507798 22507819 chr3R 22507877 22507903 5 80 3.5 3.5 3.5 1.1 105 chr3R 22507798 intron Octbeta1R + chr3R 22507850 intron Octbeta1R + chr3R 22507903 intron Octbeta1R + chr3R_5_22505001 chr3R_22505001 RAL-136 1147 chr3R 22595188 22595211 chr3R 22595276 22595298 7 86 10.0 14.5 12.2 0.5 110 chr3R 22595188 intron Efa6 + chr3R 22595243 intron Efa6 + chr3R 22595298 intron Efa6 + chr3R_7_22595001 chr3R_22595001 RAL-136 1148 chr3R 22648327 22648360 chr3R 22648406 22648439 8 76 5.0 4.0 4.5 1.5 112 chr3R 22648327 intron wake + chr3R 22648383 intron wake + chr3R 22648439 intron wake + chr3R_8_22645001 chr3R_22645001 RAL-136 1149 chr3R 22663509 22663536 chr3R 22663586 22663597 7 74 9.0 8.5 8.8 0.7 88 chr3R 22663509 intron wake + chr3R 22663553 intron wake + chr3R 22663597 intron wake + chr3R_7_22660001 chr3R_22660001 RAL-136 1150 chr3R 22757092 22757106 chr3R 22757208 22757222 4 115 8.5 6.0 7.2 0.5 130 chr3R 22757092 intron,intron CG7029 +,Usp12-46 + chr3R 22757157 intron,intron CG7029 +,Usp12-46 + chr3R 22757222 intron,intron CG7029 +,Usp12-46 + chr3R_4_22755001 chr3R_22755001 RAL-136 1151 chr3R 22794516 22794550 chr3R 22794583 22794626 6 74 0.0 0.5 0.2 5.0 110 chr3R 22794516 intergenic CG7029 + chr3R 22794571 intergenic not near genes chr3R 22794626 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-136 1152 chr3R 22797760 22797938 chr3R 22797844 22798032 5 85 4.0 7.0 5.5 0.8 272 chr3R 22797760 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_5_22795001 chr3R_22795001 RAL-136 1153 chr3R 22812203 22812231 chr3R 22812319 22812350 5 118 13.0 13.5 13.2 0.4 147 chr3R 22812203 intergenic not near genes chr3R 22812276 intergenic not near genes chr3R 22812350 intergenic not near genes chr3R_5_22810001 chr3R_22810001 RAL-136 1154 chr3R 22840828 22840851 chr3R 22841288 22841300 6 458 5.0 12.0 8.5 0.6 472 chr3R 22840828 intergenic not near genes chr3R 22841064 intergenic not near genes chr3R 22841300 intergenic not near genes chr3R_6_22840001 chr3R_22840001 RAL-136 1155 chr3R 22889011 22889048 chr3R 22889088 22889125 5 77 12.5 8.5 10.5 0.4 114 chr3R 22889011 intergenic not near genes chr3R 22889068 intergenic not near genes chr3R 22889125 intergenic not near genes chr3R_5_22885001 chr3R_22885001 RAL-136 1156 chr3R 22927887 22927899 chr3R 22927982 22927993 5 94 7.5 7.5 7.5 0.6 106 chr3R 22927887 intron klg + chr3R 22927940 intron klg + chr3R 22927993 intron klg + chr3R_5_22925001 chr3R_22925001 RAL-136 1157 chr3R 22944947 22944954 chr3R 22945025 22945028 4 76 2.5 9.5 6.0 0.6 81 chr3R 22944947 intron klg + chr3R 22944988 intron klg + chr3R 22945028 intron klg + chr3R_4_22940001 chr3R_22940001 RAL-136 1158 chr3R 22953833 22953858 chr3R 22954483 22954510 5 652 6.5 11.5 9.0 0.5 677 chr3R 22953833 intron klg + chr3R 22954172 intron klg + chr3R 22954510 intron klg + chr3R_5_22950001 chr3R_22950001 RAL-136 1159 chr3R 23064173 23064202 chr3R 23064282 23064307 5 108 9.5 6.0 7.8 0.6 134 chr3R 23064173 exon CG17111 - chr3R 23064240 intron CG17111 - chr3R 23064307 exon CG17111 - chr3R_5_23060001 chr3R_23060001 RAL-136 1160 chr3R 23064891 23064895 chr3R 23064972 23064986 4 88 1.0 5.5 3.2 1.0 95 chr3R 23064891 intron CG17111 - chr3R 23064938 intron CG17111 - chr3R 23064986 intron CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-136 1161 chr3R 23075430 23075451 chr3R 23075513 23075517 5 76 4.5 6.0 5.2 0.8 87 chr3R 23075430 intron CG13830 - chr3R 23075474 intron CG13830 - chr3R 23075517 intron CG13830 - chr3R_5_23075001 chr3R_23075001 RAL-136 1162 chr3R 23110880 23110903 chr3R 23111047 23111056 4 159 0.5 2.0 1.2 1.8 176 chr3R 23110880 intron CG13830 - chr3R 23110968 intron CG13830 - chr3R 23111056 intron CG13830 - chr3R_4_23110001 chr3R_23110001 RAL-136 1163 chr3R 23182686 23182701 chr3R 23182769 23182777 4 80 2.0 4.5 3.2 1.0 91 chr3R 23182686 intron Irk1 + chr3R 23182732 intron Irk1 + chr3R 23182777 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-136 1164 chr3R 23197960 23197979 chr3R 23198039 23198058 5 79 2.0 1.0 1.5 2.0 98 chr3R 23197960 exon cnc - chr3R 23198009 intron cnc - chr3R 23198058 intron cnc - chr3R_5_23195001 chr3R_23195001 RAL-136 1165 chr3R 23242509 23242521 chr3R 23242606 23242615 4 102 7.5 7.5 7.5 0.5 106 chr3R 23242509 intron CG4467 - chr3R 23242562 intron CG4467 - chr3R 23242615 intron CG4467 - chr3R_4_23240001 chr3R_23240001 RAL-136 1166 chr3R 23335433 23335454 chr3R 23335510 23335532 5 76 7.0 6.5 6.8 0.6 99 chr3R 23335433 intron pnt - chr3R 23335482 intron pnt - chr3R 23335532 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-136 1167 chr3R 23685567 23685588 chr3R 23685696 23685711 4 126 12.0 7.0 9.5 0.4 144 chr3R 23685567 exon CG18754 + chr3R 23685639 exon CG18754 + chr3R 23685711 exon CG18754 + chr3R_4_23685001 chr3R_23685001 RAL-136 1168 chr3R 23783984 23784013 chr3R 23784093 23784122 6 105 5.0 5.0 5.0 1.0 138 chr3R 23783984 intron mbc + chr3R 23784053 intron mbc + chr3R 23784122 intron mbc + chr3R_6_23780001 chr3R_23780001 RAL-136 1169 chr3R 23949040 23949066 chr3R 23949117 23949143 6 77 2.0 2.5 2.2 1.9 103 chr3R 23949040 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949143 intergenic not near genes chr3R_6_23945001 chr3R_23945001 RAL-136 1170 chr3R 24011657 24011680 chr3R 24011741 24011764 6 81 1.5 0.5 1.0 3.0 107 chr3R 24011657 intron KrT95D - chr3R 24011710 intron KrT95D - chr3R 24011764 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-136 1171 chr3R 24072084 24072113 chr3R 24072522 24072531 jockey 9 435 1.5 0.0 0.8 5.0 447 chr3R 24072084 intron 4EHP - chr3R 24072308 intron 4EHP - chr3R 24072531 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-136 1172 chr3R 24076920 24076944 chr3R 24078387 24078410 hobo 4 1464 2.5 3.0 2.8 1.1 1490 chr3R 24076920 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078410 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-136 1173 chr3R 24096743 24096752 chr3R 24096810 24096837 4 76 3.0 3.0 3.0 1.0 94 chr3R 24096743 intron 4EHP - chr3R 24096790 intron 4EHP - chr3R 24096837 intron 4EHP - chr3R_4_24095001 chr3R_24095001 RAL-136 1174 chr3R 24199746 24199764 chr3R 24199819 24199843 6 78 6.0 6.0 6.0 0.9 97 chr3R 24199746 intron twin - chr3R 24199794 intron twin - chr3R 24199843 intron twin - chr3R_6_24195001 chr3R_24195001 RAL-136 1175 chr3R 24261186 24261211 chr3R 24261260 24261288 6 75 15.0 11.5 13.2 0.4 102 chr3R 24261186 intron jar - chr3R 24261237 intron jar - chr3R 24261288 intron jar - chr3R_6_24260001 chr3R_24260001 RAL-136 1176 chr3R 21907535 21907535 chr3R 24389465 24389465 5 2481930 24.0 11.0 17.5 0.3 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-136 1177 chr3R 24441395 24441418 chr3R 24441484 24441507 5 86 8.5 10.5 9.5 0.5 112 chr3R 24441395 intron nAChRalpha1 - chr3R 24441451 intron nAChRalpha1 - chr3R 24441507 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-136 1178 chr3R 24493064 24493081 chr3R 24493150 24493167 4 84 4.5 3.0 3.8 0.8 103 chr3R 24493064 intergenic not near genes chr3R 24493116 intergenic not near genes chr3R 24493167 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-136 1179 chr3R 24670167 24670194 chr3R 24670251 24670272 5 81 1.5 2.0 1.8 1.8 105 chr3R 24670167 intron slo + chr3R 24670220 intron slo + chr3R 24670272 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-136 1180 chr3R 24730094 24730121 chr3R 24732471 24732478 Doc 12 2368 2.5 1.0 1.8 4.3 2384 chr3R 24730094 intron tok + chr3R 24731286 intron tok + chr3R 24732478 intron tok + chr3R_12_24730001 chr3R_24730001 RAL-136 1181 chr3R 24741083 24741117 chr3R 24741180 24741214 8 94 7.0 7.0 7.0 1.0 131 chr3R 24741083 intron tok + chr3R 24741148 intron tok + chr3R 24741214 intron tok + chr3R_8_24740001 chr3R_24740001 RAL-136 1182 chr3R 24927126 24927152 chr3R 24931917 24931929 Doc 5 4781 2.0 3.5 2.8 1.3 4803 chr3R 24927126 intergenic Trf4-2 + chr3R 24929528 intergenic not near genes chr3R 24931929 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-136 1183 chr3R 24974924 24974932 chr3R 24974991 24975008 6 76 0.5 4.5 2.5 1.7 84 chr3R 24974924 intergenic not near genes chr3R 24974966 intergenic not near genes chr3R 24975008 intergenic not near genes chr3R_6_24970001 chr3R_24970001 RAL-136 1184 chr3R 25300675 25300687 chr3R 25300784 25300794 4 111 7.0 6.0 6.5 0.5 119 chr3R 25300675 intergenic CG13659 + chr3R 25300734 intergenic CG13659 + chr3R 25300794 intergenic CG13659 + chr3R_4_25300001 chr3R_25300001 RAL-136 1185 chr3R 25436490 25436521 chr3R 25436584 25436615 7 92 1.5 3.5 2.5 2.0 125 chr3R 25436490 intron Fur1 - chr3R 25436552 intron Fur1 - chr3R 25436615 intron Fur1 - chr3R_7_25435001 chr3R_25435001 RAL-136 1186 chr3R 25651035 25651067 chr3R 25651114 25651146 4 79 12.0 12.0 12.0 0.3 111 chr3R 25651035 intergenic mir-92b + chr3R 25651090 intergenic mir-92b + chr3R 25651146 intergenic mir-92b + chr3R_4_25650001 chr3R_25650001 RAL-136 1187 chr3R 25658762 25658774 chr3R 25658840 25658853 4 79 6.0 7.5 6.8 0.5 91 chr3R 25658762 intron Tnks - chr3R 25658808 intron Tnks - chr3R 25658853 intron Tnks - chr3R_4_25655001 chr3R_25655001 RAL-136 1188 chr3R 25661286 25661301 chr3R 25661354 25661378 5 74 4.0 1.5 2.8 1.3 92 chr3R 25661286 5` UTR Tnks - chr3R 25661332 intergenic Tnks -,CR45208 -,RASSF8 + chr3R 25661378 intergenic Tnks -,CR45208 -,RASSF8 + chr3R_5_25660001 chr3R_25660001 RAL-136 1189 chr3R 25832700 25832722 chr3R 25841882 25841904 roo 7 9181 3.5 5.0 4.2 1.3 9204 chr3R 25832700 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841904 exon alpha4GT2 + chr3R_7_25835001 chr3R_25835001 RAL-136 1190 chr3R 25956464 25956493 chr3R 25956546 25956579 5 82 2.5 2.0 2.2 1.6 115 chr3R 25956464 intergenic CCAP-R - chr3R 25956522 intergenic CCAP-R - chr3R 25956579 intergenic CCAP-R - chr3R_5_25955001 chr3R_25955001 RAL-136 1191 chr3R 26066372 26066392 chr3R 26066449 26066477 8 78 3.5 7.0 5.2 1.3 105 chr3R 26066372 intergenic not near genes chr3R 26066424 intergenic not near genes chr3R 26066477 intergenic not near genes chr3R_8_26065001 chr3R_26065001 RAL-136 1192 chr3R 26093852 26093875 chr3R 26093921 26093938 10 69 4.0 4.0 4.0 2.0 86 chr3R 26093852 intron dys - chr3R 26093895 intron dys - chr3R 26093938 intron dys - chr3R_10_26090001 chr3R_26090001 RAL-136 1193 chr3R 26138891 26138910 chr3R 26139437 26139457 4 546 6.5 7.0 6.8 0.5 566 chr3R 26138891 intergenic not near genes chr3R 26139174 intergenic not near genes chr3R 26139457 intergenic not near genes chr3R_4_26135001 chr3R_26135001 RAL-136 1194 chr3R 26226997 26227018 chr3R 26227095 26227123 4 102 15.0 15.0 15.0 0.2 126 chr3R 26226997 intergenic not near genes chr3R 26227060 intergenic not near genes chr3R 26227123 intergenic not near genes chr3R_4_26225001 chr3R_26225001 RAL-136 1195 chr3R 26294717 26294750 chr3R 26294793 26294828 8 73 8.0 6.0 7.0 1.0 111 chr3R 26294717 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294828 intergenic not near genes chr3R_8_26290001 chr3R_26290001 RAL-136 1196 chr3R 26338952 26339245 chr3R 26339058 26339340 5 97 15.0 13.5 14.2 0.3 388 chr3R 26338952 intron CG33970 + chr3R 26339146 intron CG33970 + chr3R 26339340 intron CG33970 + chr3R_5_26335001 chr3R_26335001 RAL-136 1197 chr3R 26376338 26376355 chr3R 26385497 26385515 roo 7 9158 1.5 3.0 2.2 2.2 9177 chr3R 26376338 intergenic not near genes chr3R 26380926 intergenic not near genes chr3R 26385515 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-136 1198 chr3R 26529345 26529380 chr3R 26529428 26529463 6 78 6.0 6.0 6.0 0.9 118 chr3R 26529345 intron plum - chr3R 26529404 intron plum - chr3R 26529463 intron plum - chr3R_6_26525001 chr3R_26525001 RAL-136 1199 chr3R 26558332 26558355 chr3R 26565639 26565667 Stalker4 5 7308 2.0 2.5 2.2 1.6 7335 chr3R 26558332 intron scrib + chr3R 26562000 intron scrib + chr3R 26565667 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-136 1200 chr3R 26607744 26607763 chr3R 26607818 26607839 4 74 5.0 4.5 4.8 0.7 95 chr3R 26607744 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607839 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-136 1201 chr3R 26642735 26642759 chr3R 26643124 26643153 jockey 7 392 4.5 1.5 3.0 1.8 418 chr3R 26642735 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-136 1202 chr3R 26691393 26691411 chr3R 26691469 26691488 5 76 3.0 8.0 5.5 0.8 95 chr3R 26691393 intergenic not near genes chr3R 26691440 intergenic not near genes chr3R 26691488 intergenic not near genes chr3R_5_26690001 chr3R_26690001 RAL-136 1203 chr3R 26770244 26770273 chr3R 26770321 26770350 5 75 7.0 6.5 6.8 0.6 106 chr3R 26770244 intergenic CR45563 + chr3R 26770297 intergenic CR45563 + chr3R 26770350 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-136 1204 chr3R 26852493 26852506 chr3R 26852576 26852592 4 85 5.5 8.0 6.8 0.5 99 chr3R 26852493 intron Lerp - chr3R 26852542 intron Lerp - chr3R 26852592 intron Lerp - chr3R_4_26850001 chr3R_26850001 RAL-136 1205 chr3R 27028724 27028746 chr3R 27028800 27028825 6 78 3.5 1.5 2.5 1.7 101 chr3R 27028724 intron RYa-R + chr3R 27028774 intron RYa-R + chr3R 27028825 intron RYa-R + chr3R_6_27025001 chr3R_27025001 RAL-136 1206 chr3R 27140515 27140526 chr3R 27148125 27148136 412 4 7608 10.5 5.0 7.8 0.5 7621 chr3R 27140515 intron CG6051 - chr3R 27144326 intron CG6051 - chr3R 27148136 intron CG6051 - chr3R_4_27140001 chr3R_27140001 RAL-136 1207 chr3R 27140530 27140543 chr3R 27148123 27148153 412 12 7607 6.5 5.0 5.8 1.8 7623 chr3R 27140530 intron CG6051 - chr3R 27144342 intron CG6051 - chr3R 27148153 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-136 1208 chr3R 27292298 27292307 chr3R 27292395 27292395 4 98 2.5 5.0 3.8 0.8 97 chr3R 27292298 intergenic CG3348 - chr3R 27292346 intergenic CG3348 - chr3R 27292395 intergenic CG3348 - chr3R_4_27290001 chr3R_27290001 RAL-136 1209 chr3R 27342807 27342823 chr3R 27351375 27351400 Tirant 7 8576 1.5 3.0 2.2 2.2 8593 chr3R 27342807 intron CG42534 + chr3R 27347104 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-136 1210 chr3R 27393768 27393784 chr3R 27393833 27393857 7 76 9.5 9.0 9.2 0.7 89 chr3R 27393768 intron side - chr3R 27393812 intron side - chr3R 27393857 intron side - chr3R_7_27390001 chr3R_27390001 RAL-136 1211 chr3R 27547679 27547682 chr3R 27554350 27554354 4 6673 8.0 20.5 14.2 0.3 6675 chr3R 27547679 intergenic Klp98A -,Gr98d + chr3R 27551016 exon Klp98A - chr3R 27554354 intron Klp98A - chr3R_4_27550001 chr3R_27550001 RAL-136 1212 chr3R 27622822 27622854 chr3R 27622909 27622941 9 85 14.5 15.0 14.8 0.6 119 chr3R 27622822 intron Tusp + chr3R 27622882 intron Tusp + chr3R 27622941 intron Tusp + chr3R_9_27620001 chr3R_27620001 RAL-136 1213 chr3R 27628863 27628887 chr3R 27629230 27629253 5 366 4.5 12.0 8.2 0.5 390 chr3R 27628863 intron Tusp + chr3R 27629058 intron Tusp + chr3R 27629253 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-136 1214 chr3R 27705371 27705390 chr3R 27705450 27705454 8 77 1.0 5.0 3.0 2.0 83 chr3R 27705371 exon CG12428 - chr3R 27705412 intron CG12428 - chr3R 27705454 intron CG12428 - chr3R_8_27705001 chr3R_27705001 RAL-136 1215 chr3R 27721904 27721935 chr3R 27722002 27722033 7 94 8.5 7.5 8.0 0.8 129 chr3R 27721904 intergenic not near genes chr3R 27721968 intergenic not near genes chr3R 27722033 intergenic not near genes chr3R_7_27720001 chr3R_27720001 RAL-136 1216 chr3R 27725583 27725596 chr3R 27731025 27731038 I-element 4 5442 4.0 6.0 5.0 0.7 5455 chr3R 27725583 intergenic not near genes chr3R 27728310 intergenic not near genes chr3R 27731038 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-136 1217 chr3R 27799938 27799955 chr3R 27800020 27800034 6 79 5.0 1.0 3.0 1.5 96 chr3R 27799938 intron CG34353 - chr3R 27799986 intron CG34353 - chr3R 27800034 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-136 1218 chr3R 27856764 27856788 chr3R 27858247 27858271 hopper2 10 1478 3.0 4.0 3.5 2.2 1507 chr3R 27856764 intron CG34353 - chr3R 27857518 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-136 1219 chr3R 27871071 27871083 chr3R 27871157 27871180 4 96 11.0 9.5 10.2 0.4 109 chr3R 27871071 intron CG34353 - chr3R 27871126 intron CG34353 - chr3R 27871180 intron CG34353 - chr3R_4_27870001 chr3R_27870001 RAL-136 1220 chr3R 27875703 27875717 chr3R 27882758 27882771 297 6 7055 7.5 1.5 4.5 1.1 7068 chr3R 27875703 intron CG34353 - chr3R 27879237 intron CG34353 - chr3R 27882771 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-136 1221 chr3R 27875718 27875733 chr3R 27882756 27882787 297 5 7048 2.5 1.5 2.0 1.7 7069 chr3R 27875718 intron CG34353 - chr3R 27879252 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-136 1222 chr3R 27911253 27911259 chr3R 27911329 27911336 4 77 8.5 7.0 7.8 0.5 83 chr3R 27911253 intergenic not near genes chr3R 27911294 intergenic not near genes chr3R 27911336 intergenic not near genes chr3R_4_27910001 chr3R_27910001 RAL-136 1223 chr3R 28016650 28016676 chr3R 28016736 28016766 5 86 9.5 7.0 8.2 0.5 116 chr3R 28016650 intergenic not near genes chr3R 28016708 intergenic not near genes chr3R 28016766 intergenic not near genes chr3R_5_28015001 chr3R_28015001 RAL-136 1224 chr3R 28068503 28068524 chr3R 28073941 28073963 I-element 9 5440 2.5 3.0 2.8 2.4 5460 chr3R 28068503 intron CG34362 + chr3R 28071233 intron CG34362 + chr3R 28073963 intron CG34362 + chr3R_9_28070001 chr3R_28070001 RAL-136 1225 chr3R 28152342 28152356 chr3R 28152418 28152422 6 75 2.0 2.0 2.0 2.0 80 chr3R 28152342 intron CG34354 + chr3R 28152382 intron CG34354 + chr3R 28152422 intron CG34354 + chr3R_6_28150001 chr3R_28150001 RAL-136 1226 chr3R 28172966 28172996 chr3R 28173123 28173142 8 152 6.5 3.0 4.8 1.4 176 chr3R 28172966 intron CG34354 + chr3R 28173054 intron CG34354 + chr3R 28173142 intron CG34354 + chr3R_8_28170001 chr3R_28170001 RAL-136 1227 chr3R 28253348 28253370 chr3R 28255851 28255863 jockey 12 2504 2.0 6.0 4.0 2.4 2515 chr3R 28253348 intergenic not near genes chr3R 28254606 intergenic not near genes chr3R 28255863 intergenic not near genes chr3R_12_28250001 chr3R_28250001 RAL-136 1228 chr3R 28262878 28262912 chr3R 28262955 28262980 6 73 5.5 5.5 5.5 0.9 102 chr3R 28262878 exon CG43125 - chr3R 28262929 exon CG43125 - chr3R 28262980 exon CG43125 - chr3R_6_28260001 chr3R_28260001 RAL-136 1229 chr3R 28286317 28286337 chr3R 28286405 28286422 6 87 9.0 9.5 9.2 0.6 105 chr3R 28286317 intergenic not near genes chr3R 28286370 intergenic not near genes chr3R 28286422 intergenic not near genes chr3R_6_28285001 chr3R_28285001 RAL-136 1230 chr3R 28312268 28312296 chr3R 28312536 28312564 6 265 11.0 10.0 10.5 0.5 296 chr3R 28312268 intergenic not near genes chr3R 28312416 intergenic not near genes chr3R 28312564 intergenic not near genes chr3R_6_28310001 chr3R_28310001 RAL-136 1231 chr3R 28352366 28352521 chr3R 28352749 28352861 10 363 6.0 4.0 5.0 1.7 495 chr3R 28352366 exon Or98b + chr3R 28352614 exon Or98b + chr3R 28352861 exon Or98b + chr3R_10_28350001 chr3R_28350001 RAL-136 1232 chr3R 28376104 28376131 chr3R 28376629 28376651 7 520 4.0 7.5 5.8 1.0 547 chr3R 28376104 intergenic not near genes chr3R 28376378 intergenic not near genes chr3R 28376651 intergenic not near genes chr3R_7_28375001 chr3R_28375001 RAL-136 1233 chr3R 28390121 28390139 chr3R 28390191 28390217 4 76 6.0 8.0 7.0 0.5 96 chr3R 28390121 intergenic not near genes chr3R 28390169 intergenic not near genes chr3R 28390217 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-136 1234 chr3R 28395582 28395591 chr3R 28395658 28395684 5 88 7.5 7.0 7.2 0.6 102 chr3R 28395582 intergenic not near genes chr3R 28395633 intergenic not near genes chr3R 28395684 intergenic not near genes chr3R_5_28395001 chr3R_28395001 RAL-136 1235 chr3R 28466165 28466184 chr3R 28466470 28466489 4 304 10.5 11.0 10.8 0.3 324 chr3R 28466165 intron beat-VI + chr3R 28466327 intron beat-VI + chr3R 28466489 intron beat-VI + chr3R_4_28465001 chr3R_28465001 RAL-136 1236 chr3R 28626201 28626227 chr3R 28626293 28626322 5 96 8.5 8.0 8.2 0.5 121 chr3R 28626201 intron CG10011 - chr3R 28626262 intron CG10011 - chr3R 28626322 intron CG10011 - chr3R_5_28625001 chr3R_28625001 RAL-136 1237 chr3R 28658501 28658521 chr3R 28658643 28658670 7 142 12.5 10.5 11.5 0.6 169 chr3R 28658501 intergenic not near genes chr3R 28658586 intergenic not near genes chr3R 28658670 intergenic not near genes chr3R_7_28655001 chr3R_28655001 RAL-136 1238 chr3R 28698182 28698201 chr3R 28698264 28698283 4 80 7.0 8.0 7.5 0.5 101 chr3R 28698182 intron htt + chr3R 28698232 intron htt + chr3R 28698283 intron htt + chr3R_4_28695001 chr3R_28695001 RAL-136 1239 chr3R 28742487 28742514 chr3R 28742563 28742585 4 74 6.0 5.5 5.8 0.6 98 chr3R 28742487 intron AstA-R2 - chr3R 28742536 intron AstA-R2 - chr3R 28742585 intron AstA-R2 - chr3R_4_28740001 chr3R_28740001 RAL-136 1240 chr3R 28786477 28786503 chr3R 28786641 28786662 4 162 5.5 4.5 5.0 0.7 185 chr3R 28786477 intergenic not near genes chr3R 28786570 intergenic not near genes chr3R 28786662 intergenic not near genes chr3R_4_28785001 chr3R_28785001 RAL-136 1241 chr3R 28792878 28792902 chr3R 28797966 28797994 jockey 8 5089 1.0 1.5 1.2 3.6 5116 chr3R 28792878 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-136 1242 chr3R 21907534 21907536 chr3R 28831798 28831803 68 6924266 24.5 17.0 20.8 3.1 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-136 1243 chr3R 29009955 29009987 chr3R 29010061 29010093 4 104 5.5 5.0 5.2 0.6 138 chr3R 29009955 intron wat - chr3R 29010024 intron wat - chr3R 29010093 intron wat - chr3R_4_29010001 chr3R_29010001 RAL-136 1244 chr3R 29032747 29032770 chr3R 29032824 29032828 9 74 4.5 0.0 2.2 2.8 81 chr3R 29032747 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032788 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032828 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_9_29030001 chr3R_29030001 RAL-136 1245 chr3R 29079381 29079411 chr3R 29080753 29080768 NOF 8 1366 2.5 2.0 2.2 2.5 1387 chr3R 29079381 intron CG11873 + chr3R 29080074 intron CG11873 + chr3R 29080768 intron CG11873 + chr3R_8_29080001 chr3R_29080001 RAL-136 1246 chr3R 29213077 29213079 chr3R 29213159 29213162 4 83 11.5 10.5 11.0 0.3 85 chr3R 29213077 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213162 intergenic not near genes chr3R_4_29210001 chr3R_29210001 RAL-136 1247 chr3R 29237247 29237283 chr3R 29239268 29239286 10 2015 10.0 3.5 6.8 1.3 2039 chr3R 29237247 exon CG11951 - chr3R 29238266 intron CG11951 - chr3R 29239286 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-136 1248 chr3R 29249633 29249914 chr3R 29249720 29250003 4 87 2.5 7.0 4.8 0.7 370 chr3R 29249633 intron SP1029 - chr3R 29249818 intron SP1029 - chr3R 29250003 intron SP1029 - chr3R_4_29245001 chr3R_29245001 RAL-136 1249 chr3R 29362154 29362187 chr3R 29362240 29362273 11 84 8.5 9.0 8.8 1.1 119 chr3R 29362154 intergenic not near genes chr3R 29362214 intergenic not near genes chr3R 29362273 intergenic not near genes chr3R_11_29360001 chr3R_29360001 RAL-136 1250 chr3R 29406626 29406646 chr3R 29407899 29407932 jockey 6 1283 4.5 5.0 4.8 1.0 1306 chr3R 29406626 intron Ptp99A + chr3R 29407279 intron Ptp99A + chr3R 29407932 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-136 1251 chr3R 29472008 29472036 chr3R 29472101 29472128 10 89 3.0 4.0 3.5 2.2 120 chr3R 29472008 intron Ptp99A + chr3R 29472068 intron Ptp99A + chr3R 29472128 intron Ptp99A + chr3R_10_29470001 chr3R_29470001 RAL-136 1252 chr3R 29738267 29738281 chr3R 29739734 29739747 hobo 6 1466 2.5 1.0 1.8 2.1 1480 chr3R 29738267 intergenic CG1969 +,CG7598 + chr3R 29739007 intron CG1969 + chr3R 29739747 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-136 1253 chr3R 29738282 29738300 chr3R 29739731 29739767 hobo 5 1457 1.0 1.0 1.0 2.5 1485 chr3R 29738282 5` UTR CG1969 + chr3R 29739024 intron CG1969 + chr3R 29739767 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-136 1254 chr3R 29820152 29820162 chr3R 29820232 29820249 4 80 10.5 7.5 9.0 0.4 97 chr3R 29820152 intron neo + chr3R 29820200 intron neo + chr3R 29820249 intron neo + chr3R_4_29820001 chr3R_29820001 RAL-136 1255 chr3R 29882025 29882051 chr3R 29891177 29891208 roo 5 9155 6.0 4.5 5.2 0.8 9183 chr3R 29882025 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-136 1256 chr3R 29953450 29953478 chr3R 29953531 29953559 5 74 8.0 10.0 9.0 0.5 109 chr3R 29953450 exon TkR99D - chr3R 29953504 intron TkR99D - chr3R 29953559 intron TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-136 1257 chr3R 29963478 29963511 chr3R 29963580 29963610 8 100 6.5 11.5 9.0 0.8 132 chr3R 29963478 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963610 intron TkR99D - chr3R_8_29960001 chr3R_29960001 RAL-136 1258 chr3R 30054376 30054381 chr3R 30054479 30054501 4 116 6.5 12.5 9.5 0.4 125 chr3R 30054376 intron CG7946 + chr3R 30054438 3` UTR CG7946 + chr3R 30054501 3` UTR CG7946 + chr3R_4_30050001 chr3R_30050001 RAL-136 1259 chr3R 30082989 30083022 chr3R 30083065 30083095 6 76 1.0 0.5 0.8 3.3 106 chr3R 30082989 intron sima + chr3R 30083042 intron sima + chr3R 30083095 intron sima + chr3R_6_30080001 chr3R_30080001 RAL-136 1260 chr3R 30156868 30156898 chr3R 30156947 30156964 9 77 3.0 2.5 2.8 2.4 96 chr3R 30156868 intron CG11498 - chr3R 30156916 intron CG11498 - chr3R 30156964 intron CG11498 - chr3R_9_30155001 chr3R_30155001 RAL-136 1261 chr3R 30267997 30268271 chr3R 30268083 30268350 7 81 3.0 5.5 4.2 1.3 353 chr3R 30267997 intergenic not near genes chr3R 30268174 intergenic not near genes chr3R 30268350 intergenic not near genes chr3R_7_30265001 chr3R_30265001 RAL-136 1262 chr3R 30461499 30461521 chr3R 30461614 30461630 7 113 3.5 5.0 4.2 1.3 131 chr3R 30461499 intron CDase + chr3R 30461564 intron CDase + chr3R 30461630 intron CDase + chr3R_7_30460001 chr3R_30460001 RAL-136 1263 chr3R 30480477 30480513 chr3R 30482940 30482964 jockey 8 2459 3.5 5.5 4.5 1.5 2487 chr3R 30480477 intron PH4alphaEFB + chr3R 30481720 intron PH4alphaEFB + chr3R 30482964 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-136 1264 chr3R 30549011 30549039 chr3R 30549103 30549130 7 88 1.0 0.5 0.8 3.9 119 chr3R 30549011 intron tmod + chr3R 30549070 intron tmod + chr3R 30549130 intron tmod + chr3R_7_30545001 chr3R_30545001 RAL-136 1265 chr3R 30551273 30551294 chr3R 30551356 30551375 4 79 7.0 7.0 7.0 0.5 102 chr3R 30551273 intron tmod + chr3R 30551324 intron tmod + chr3R 30551375 intron tmod + chr3R_4_30550001 chr3R_30550001 RAL-136 1266 chr3R 30627606 30627636 chr3R 30627682 30627701 11 70 5.0 5.5 5.2 1.8 95 chr3R 30627606 exon CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627701 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-136 1267 chr3R 30679520 30679549 chr3R 30686986 30687017 blood 6 7468 3.0 3.0 3.0 1.5 7497 chr3R 30679520 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-136 1268 chr3R 30818816 30818840 chr3R 30820377 30820403 1360 7 1560 2.5 1.5 2.0 2.3 1587 chr3R 30818816 intron cindr + chr3R 30819610 intron cindr + chr3R 30820403 intron cindr + chr3R_7_30815001 chr3R_30815001 RAL-136 1269 chr3R 30888920 30888949 chr3R 30893447 30893476 6 4528 21.5 13.5 17.5 0.3 4556 chr3R 30888920 exon Sap-r - chr3R 30891198 intergenic not near genes chr3R 30893476 intergenic not near genes chr3R_6_30890001 chr3R_30890001 RAL-136 1270 chr3R 30900525 30900543 chr3R 30900605 30900623 6 79 4.0 2.5 3.2 1.4 98 chr3R 30900525 3` UTR Cyp4c3 + chr3R 30900574 3` UTR Cyp4c3 + chr3R 30900623 3` UTR Cyp4c3 + chr3R_6_30900001 chr3R_30900001 RAL-136 1271 chr3R 30921225 30921252 chr3R 30921305 30921326 7 78 11.5 10.5 11.0 0.6 101 chr3R 30921225 intron Ptx1 + chr3R 30921276 intron Ptx1 + chr3R 30921326 intron Ptx1 + chr3R_7_30920001 chr3R_30920001 RAL-136 1272 chr3R 30973138 30973163 chr3R 30973299 30973324 4 160 2.5 6.5 4.5 0.7 186 chr3R 30973138 intron 5-HT7 - chr3R 30973231 intron 5-HT7 - chr3R 30973324 intron 5-HT7 - chr3R_4_30970001 chr3R_30970001 RAL-136 1273 chr3R 30994121 30994148 chr3R 30994231 30994257 6 104 9.0 10.5 9.8 0.6 136 chr3R 30994121 intron 5-HT7 - chr3R 30994189 intron 5-HT7 - chr3R 30994257 intron 5-HT7 - chr3R_6_30990001 chr3R_30990001 RAL-136 1274 chr3R 31074249 31074262 chr3R 31081832 31081852 springer 5 7591 4.5 2.0 3.2 1.2 7603 chr3R 31074249 intron Sox100B + chr3R 31078050 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-136 1275 chr3R 31279373 31279408 chr3R 31285562 31285582 diver 10 6184 4.5 3.0 3.8 2.1 6209 chr3R 31279373 intergenic not near genes chr3R 31282478 intergenic not near genes chr3R 31285582 intergenic not near genes chr3R_10_31280001 chr3R_31280001 RAL-136 1276 chr3R 31413103 31413121 chr3R 31418287 31418317 copia 5 5196 3.5 2.5 3.0 1.2 5214 chr3R 31413103 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-136 1277 chr3R 31426880 31426898 chr3R 31426969 31426984 4 90 4.5 2.5 3.5 0.9 104 chr3R 31426880 intron Gprk2 + chr3R 31426932 intron Gprk2 + chr3R 31426984 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-136 1278 chr3R 31431114 31431123 chr3R 31431196 31431207 5 84 7.0 10.0 8.5 0.5 93 chr3R 31431114 intron Gprk2 + chr3R 31431160 intron Gprk2 + chr3R 31431207 intron Gprk2 + chr3R_5_31430001 chr3R_31430001 RAL-136 1279 chr3R 31442271 31442293 chr3R 31442355 31442378 6 82 4.5 6.5 5.5 0.9 107 chr3R 31442271 intron Gprk2 + chr3R 31442324 intron Gprk2 + chr3R 31442378 intron Gprk2 + chr3R_6_31440001 chr3R_31440001 RAL-136 1280 chr3R 31516973 31517001 chr3R 31517112 31517143 10 136 9.5 7.5 8.5 1.1 170 chr3R 31516973 intergenic not near genes chr3R 31517058 intergenic not near genes chr3R 31517143 intergenic not near genes chr3R_10_31515001 chr3R_31515001 RAL-136 1281 chr3R 31538503 31538521 chr3R 31538581 31538599 6 78 3.5 2.5 3.0 1.5 96 chr3R 31538503 intergenic not near genes chr3R 31538551 intergenic not near genes chr3R 31538599 intergenic not near genes chr3R_6_31535001 chr3R_31535001 RAL-136 1282 chr3R 31691532 31691560 chr3R 31696297 31696326 Doc 8 4760 3.0 3.5 3.2 1.9 4794 chr3R 31691532 intergenic not near genes chr3R 31693929 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-136 1283 chr3R 31831539 31831544 chr3R 31831615 31831620 4 76 12.5 10.5 11.5 0.3 81 chr3R 31831539 intron RhoGAP100F + chr3R 31831580 intron RhoGAP100F + chr3R 31831620 intron RhoGAP100F + chr3R_4_31830001 chr3R_31830001 RAL-136 1284 chr3R 31831545 31831565 chr3R 31831614 31831644 9 77 9.5 11.0 10.2 0.8 99 chr3R 31831545 intron RhoGAP100F + chr3R 31831594 intron RhoGAP100F + chr3R 31831644 intron RhoGAP100F + chr3R_9_31830001 chr3R_31830001 RAL-136 1285 chr3R 31870653 31870685 chr3R 31870744 31870776 4 89 4.5 6.0 5.2 0.6 123 chr3R 31870653 intron heph - chr3R 31870714 intron heph - chr3R 31870776 intron heph - chr3R_4_31870001 chr3R_31870001 RAL-136 1286 chr3R 31925701 31925721 chr3R 31925765 31925785 6 70 3.0 5.0 4.0 1.2 84 chr3R 31925701 intron heph - chr3R 31925743 intron heph - chr3R 31925785 intron heph - chr3R_6_31925001 chr3R_31925001 RAL-136 1287 chr3R 31949516 31949535 chr3R 31949587 31949621 5 81 6.0 7.0 6.5 0.7 105 chr3R 31949516 intron heph - chr3R 31949568 intron heph - chr3R 31949621 intron heph - chr3R_5_31945001 chr3R_31945001 RAL-136 1288 chr3R 31997991 31998024 chr3R 32005460 32005494 blood 8 7468 2.5 3.0 2.8 2.1 7503 chr3R 31997991 intron heph - chr3R 32001742 intron heph - chr3R 32005494 intron heph - chr3R_8_32000001 chr3R_32000001 RAL-136 1289 chr3R 32022322 32022347 chr3R 32022424 32022448 5 98 9.5 9.0 9.2 0.5 126 chr3R 32022322 5` UTR CR45557 + chr3R 32022385 5` UTR CR45557 + chr3R 32022448 5` UTR CR45557 + chr3R_5_32020001 chr3R_32020001 RAL-136 1290 chr4 671603 671635 chr4 680186 680213 Tirant 9 8580 3.0 3.5 3.2 2.1 8610 chr4 671603 intron CG11360 + chr4 675908 intron CG11360 + chr4 680213 intron CG11360 + chr4_9_675001 chr4_675001 RAL-136 1291 chrX 295856 295875 chrX 303476 303493 412 5 7618 3.0 2.0 2.5 1.4 7637 chrX 295856 intron CG3777 + chrX 299674 intron CG3777 + chrX 303493 intron CG3777 + chrX_5_295001 chrX_295001 RAL-136 1292 chrX 551421 551453 chrX 558983 559014 412 10 7561 5.0 5.5 5.2 1.6 7593 chrX 551421 intron Appl + chrX 555218 intron Appl + chrX 559014 intron Appl + chrX_10_555001 chrX_555001 RAL-136 1293 chrX 670275 670295 chrX 670345 670364 10 74 0.0 1.0 0.5 6.7 89 chrX 670275 intergenic not near genes chrX 670320 intergenic not near genes chrX 670364 intergenic not near genes chrX_10_670001 chrX_670001 RAL-136 1294 chrX 680841 680871 chrX 680923 680954 6 83 3.5 1.5 2.5 1.7 113 chrX 680841 intergenic not near genes chrX 680898 intergenic not near genes chrX 680954 intergenic not near genes chrX_6_680001 chrX_680001 RAL-136 1295 chrX 706814 706822 chrX 707160 707186 4 358 1.0 5.5 3.2 1.0 372 chrX 706814 intron sdk + chrX 707000 intron sdk + chrX 707186 intron sdk + chrX_4_705001 chrX_705001 RAL-136 1296 chrX 736002 736036 chrX 736094 736128 8 92 0.0 2.5 1.2 3.6 126 chrX 736002 intron sdk + chrX 736065 intron sdk + chrX 736128 intron sdk + chrX_8_735001 chrX_735001 RAL-136 1297 chrX 736306 736335 chrX 736385 736411 8 79 1.0 2.5 1.8 2.9 105 chrX 736306 intron sdk + chrX 736358 intron sdk + chrX 736411 intron sdk + chrX_8_735001 chrX_735001 RAL-136 1298 chrX 778126 778160 chrX 778215 778248 11 87 2.5 0.5 1.5 4.4 122 chrX 778126 intron fz3 + chrX 778187 intron fz3 + chrX 778248 intron fz3 + chrX_11_775001 chrX_775001 RAL-136 1299 chrX 806788 806817 chrX 806879 806913 9 89 3.5 1.5 2.5 2.6 125 chrX 806788 intron Sec22 + chrX 806850 intron Sec22 + chrX 806913 intron Sec22 + chrX_9_805001 chrX_805001 RAL-136 1300 chrX 827605 827613 chrX 835396 835396 roo 5 7790 8.0 0.0 4.0 1.0 7791 chrX 827605 intron CG43867 - chrX 831500 intron CG43867 - chrX 835396 intron CG43867 - chrX_5_830001 chrX_830001 RAL-136 1301 chrX 827615 827633 chrX 835395 835413 roo 6 7783 4.5 0.0 2.2 1.9 7798 chrX 827615 intron CG43867 - chrX 831514 intron CG43867 - chrX 835413 intron CG43867 - chrX_6_830001 chrX_830001 RAL-136 1302 chrX 906705 906729 chrX 908493 908496 S-element 9 1785 3.0 4.0 3.5 2.0 1791 chrX 906705 intron CG43867 - chrX 907600 intron CG43867 - chrX 908496 intron CG43867 - chrX_9_905001 chrX_905001 RAL-136 1303 chrX 1003128 1003133 chrX 1003599 1003615 4 483 2.0 1.0 1.5 1.6 487 chrX 1003128 intergenic not near genes chrX 1003372 intergenic not near genes chrX 1003615 intergenic not near genes chrX_4_1000001 chrX_1000001 RAL-136 1304 chrX 1050554 1050575 chrX 1050630 1050632 4 71 4.5 2.5 3.5 0.9 78 chrX 1050554 intron CR44779 + chrX 1050593 intron CR44779 + chrX 1050632 intron CR44779 + chrX_4_1050001 chrX_1050001 RAL-136 1305 chrX 1163312 1163330 chrX 1163380 1163408 4 74 1.5 0.5 1.0 2.0 96 chrX 1163312 intergenic CG34320 - chrX 1163360 intergenic CG34320 - chrX 1163408 intergenic CG34320 - chrX_4_1160001 chrX_1160001 RAL-136 1306 chrX 1253730 1253749 chrX 1253811 1253831 6 80 3.0 3.5 3.2 1.4 101 chrX 1253730 intron Atf3 - chrX 1253780 intron Atf3 - chrX 1253831 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-136 1307 chrX 1357777 1357808 chrX 1367946 1367967 Doc 6 10166 4.0 1.5 2.8 1.6 10190 chrX 1357777 intergenic png - chrX 1362872 intergenic not near genes chrX 1367967 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-136 1308 chrX 1518051 1518064 chrX 1523439 1523446 jockey 6 5391 2.0 4.0 3.0 1.5 5395 chrX 1518051 intergenic inc + chrX 1520748 intergenic not near genes chrX 1523446 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-136 1309 chrX 1627985 1628002 chrX 1635452 1635470 gtwin 4 7467 4.5 2.5 3.5 0.9 7485 chrX 1627985 intron,intron Mur2B -,br + chrX 1631728 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-136 1310 chrX 1852310 1852323 chrX 1857138 1857163 8 4827 10.0 24.5 17.2 0.4 4853 chrX 1852310 exon CG42666 + chrX 1854736 intergenic not near genes chrX 1857163 intergenic not near genes chrX_8_1850001 chrX_1850001 RAL-136 1311 chrX 1903351 1903374 chrX 1903433 1903435 9 78 3.5 3.5 3.5 2.0 84 chrX 1903351 5` UTR CR43864 + chrX 1903393 5` UTR CR43864 + chrX 1903435 5` UTR CR43864 + chrX_9_1900001 chrX_1900001 RAL-136 1312 chrX 1954905 1954912 chrX 1962824 1962827 Stalker2 4 7918 3.5 0.0 1.8 1.4 7922 chrX 1954905 intron Hr4 + chrX 1958866 intron Hr4 + chrX 1962827 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-136 1313 chrX 2014060 2014087 chrX 2014140 2014167 4 84 5.5 6.0 5.8 0.6 107 chrX 2014060 intron east + chrX 2014114 intron east + chrX 2014167 intron east + chrX_4_2010001 chrX_2010001 RAL-136 1314 chrX 2023960 2023988 chrX 2024083 2024111 10 118 6.0 3.5 4.8 1.7 151 chrX 2023960 3` UTR,3` UTR east +,Actn - chrX 2024036 3` UTR,3` UTR east +,Actn - chrX 2024111 3` UTR,3` UTR east +,Actn - chrX_10_2020001 chrX_2020001 RAL-136 1315 chrX 2069369 2069404 chrX 2069469 2069503 11 94 1.0 0.5 0.8 6.1 134 chrX 2069369 intron,exon CG4199 -,CG4194 + chrX 2069436 intron,3` UTR CG4199 -,CG4194 + chrX 2069503 intron,3` UTR CG4199 -,CG4194 + chrX_11_2065001 chrX_2065001 RAL-136 1316 chrX 2098614 2098632 chrX 2098688 2098688 4 69 3.5 5.5 4.5 0.7 74 chrX 2098614 intron csw + chrX 2098651 intron csw + chrX 2098688 intron csw + chrX_4_2095001 chrX_2095001 RAL-136 1317 chrX 2536011 2536018 chrX 2536614 2536628 4 604 1.5 3.5 2.5 1.1 617 chrX 2536011 intron trol - chrX 2536320 intron trol - chrX 2536628 intron trol - chrX_4_2535001 chrX_2535001 RAL-136 1318 chrX 2544026 2544051 chrX 2544363 2544376 5 334 1.5 4.0 2.8 1.3 350 chrX 2544026 intron trol - chrX 2544201 intron trol - chrX 2544376 intron trol - chrX_5_2540001 chrX_2540001 RAL-136 1319 chrX 2552804 2552825 chrX 2552928 2552946 5 118 3.0 5.5 4.2 1.0 142 chrX 2552804 intron Pdfr + chrX 2552875 intron Pdfr + chrX 2552946 intron Pdfr + chrX_5_2550001 chrX_2550001 RAL-136 1320 chrX 2578812 2578839 chrX 2578899 2578931 9 87 4.0 5.5 4.8 1.6 119 chrX 2578812 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578931 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-136 1321 chrX 2664403 2664417 chrX 2665532 2665562 1360 4 1137 0.5 3.5 2.0 1.3 1159 chrX 2664403 intron sgg + chrX 2664982 intron sgg + chrX 2665562 intron sgg + chrX_4_2660001 chrX_2660001 RAL-136 1322 chrX 2803497 2803517 chrX 2803640 2803659 10 141 5.0 1.5 3.2 2.4 162 chrX 2803497 intron kirre + chrX 2803578 intron kirre + chrX 2803659 intron kirre + chrX_10_2800001 chrX_2800001 RAL-136 1323 chrX 2950168 2950177 chrX 2950273 2950301 4 113 2.0 4.0 3.0 1.0 133 chrX 2950168 intron kirre + chrX 2950234 intron kirre + chrX 2950301 intron kirre + chrX_4_2950001 chrX_2950001 RAL-136 1324 chrX 3058028 3058039 chrX 3058268 3058280 pogo 4 240 5.0 1.0 3.0 1.0 252 chrX 3058028 intron kirre + chrX 3058154 intron kirre + chrX 3058280 intron kirre + chrX_4_3055001 chrX_3055001 RAL-136 1325 chrX 3415022 3415047 chrX 3421206 3421229 3S18 7 6179 3.5 2.0 2.8 1.8 6207 chrX 3415022 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421229 intron,intron CR44999 +,CG12535 - chrX_7_3415001 chrX_3415001 RAL-136 1326 chrX 3493098 3493122 chrX 3502254 3502281 roo 7 9155 3.5 0.5 2.0 2.3 9183 chrX 3493098 intron,intron CR44999 +,Gas8 - chrX 3497690 intron,intron CR44999 +,Gas8 - chrX 3502281 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-136 1327 chrX 3535410 3535431 chrX 3535499 3535522 6 88 0.5 3.5 2.0 2.0 112 chrX 3535410 intron CG32791 - chrX 3535466 intron CG32791 - chrX 3535522 intron CG32791 - chrX_6_3535001 chrX_3535001 RAL-136 1328 chrX 3597549 3597581 chrX 3619717 3619749 roo 10 22168 3.0 4.5 3.8 2.1 22200 chrX 3597549 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_10_3605001 chrX_3605001 RAL-136 1329 chrX 3657413 3657435 chrX 3657492 3657511 10 76 3.0 2.0 2.5 2.9 98 chrX 3657413 intron AstA-R1 + chrX 3657462 intron AstA-R1 + chrX 3657511 intron AstA-R1 + chrX_10_3655001 chrX_3655001 RAL-136 1330 chrX 3726761 3726795 chrX 3730157 3730192 NOF 9 3389 3.0 2.0 2.5 2.6 3431 chrX 3726761 intron tlk + chrX 3728476 intron tlk + chrX 3730192 intron tlk + chrX_9_3725001 chrX_3725001 RAL-136 1331 chrX 3866116 3866133 chrX 3866183 3866211 6 72 1.0 1.0 1.0 3.0 95 chrX 3866116 intron yin - chrX 3866164 intron yin - chrX 3866211 intron yin - chrX_6_3865001 chrX_3865001 RAL-136 1332 chrX 3950675 3950689 chrX 3950987 3950988 4 309 4.5 2.5 3.5 0.9 313 chrX 3950675 intron Vap-33A + chrX 3950832 intron Vap-33A + chrX 3950988 intron Vap-33A + chrX_4_3950001 chrX_3950001 RAL-136 1333 chrX 3950692 3950710 chrX 3950985 3951010 6 299 1.5 2.5 2.0 2.0 318 chrX 3950692 intron Vap-33A + chrX 3950851 intron Vap-33A + chrX 3951010 intron Vap-33A + chrX_6_3950001 chrX_3950001 RAL-136 1334 chrX 3986884 3986893 chrX 3994502 3994526 412 4 7627 3.5 3.0 3.2 1.0 7642 chrX 3986884 intergenic not near genes chrX 3990705 intergenic not near genes chrX 3994526 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-136 1335 chrX 4029547 4029554 chrX 4029736 4029736 4 186 2.5 2.5 2.5 1.1 189 chrX 4029547 intergenic not near genes chrX 4029642 intergenic not near genes chrX 4029736 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-136 1336 chrX 4046328 4046355 chrX 4046412 4046414 8 74 0.5 3.0 1.8 2.9 86 chrX 4046328 intergenic not near genes chrX 4046371 intergenic not near genes chrX 4046414 intergenic not near genes chrX_8_4045001 chrX_4045001 RAL-136 1337 chrX 4047468 4047505 chrX 4047581 4047610 11 108 2.0 2.5 2.2 3.4 142 chrX 4047468 intergenic CR45482 - chrX 4047539 intergenic CR45482 - chrX 4047610 3` UTR CR45482 - chrX_11_4045001 chrX_4045001 RAL-136 1338 chrX 4048499 4048527 chrX 4048575 4048603 7 73 2.5 2.5 2.5 2.0 104 chrX 4048499 3` UTR CR45482 - chrX 4048551 3` UTR CR45482 - chrX 4048603 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-136 1339 chrX 4157907 4157919 chrX 4164960 4164966 297 4 7052 1.5 2.5 2.0 1.3 7059 chrX 4157907 intron Fas2 - chrX 4161436 intron Fas2 - chrX 4164966 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-136 1340 chrX 4358086 4358123 chrX 4358187 4358210 8 98 2.0 0.0 1.0 4.0 124 chrX 4358086 intron norpA + chrX 4358148 intron norpA + chrX 4358210 intron norpA + chrX_8_4355001 chrX_4355001 RAL-136 1341 chrX 4391488 4391494 chrX 17267293 17267293 4 12875804 1.5 10.0 5.8 0.6 12875805 chrX 4391488 intron CR32773 - chrX 10829390 intergenic not near genes chrX 17267293 intron f + chrX_4_10825001 chrX_10825001 RAL-136 1342 chrX 4396980 4397009 chrX 4397065 4397078 8 80 1.5 1.5 1.5 3.2 98 chrX 4396980 intron CR32773 - chrX 4397029 intron CR32773 - chrX 4397078 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-136 1343 chrX 4693773 4693783 chrX 4693846 4693868 8 82 0.0 3.0 1.5 3.2 95 chrX 4693773 intron ctp + chrX 4693820 intron ctp + chrX 4693868 intron ctp + chrX_8_4690001 chrX_4690001 RAL-136 1344 chrX 4731815 4731845 chrX 4736906 4736924 jockey 6 5088 5.5 1.5 3.5 1.3 5109 chrX 4731815 intergenic not near genes chrX 4734370 intergenic not near genes chrX 4736924 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-136 1345 chrX 4756227 4756240 chrX 12076672 12076672 4 7320438 3.5 6.0 4.8 0.7 7320445 chrX 4756227 intergenic not near genes chrX 8416450 intron Trf2 + chrX 12076672 intron,intron CR43960 +,Ten-a + chrX_4_8415001 chrX_8415001 RAL-136 1346 chrX 4763268 4763275 chrX 4763753 4763763 Stalker4 4 484 2.0 3.0 2.5 1.1 495 chrX 4763268 intergenic not near genes chrX 4763516 intergenic not near genes chrX 4763763 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-136 1347 chrX 4792383 4792412 chrX 4792811 4792813 jockey 7 424 2.0 4.5 3.2 1.7 430 chrX 4792383 intergenic not near genes chrX 4792598 intergenic not near genes chrX 4792813 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-136 1348 chrX 1562990 1562990 chrX 4805476 4805477 opus 4 3242486 17.5 8.5 13.0 0.3 3242487 chrX 1562990 intron Mur2B - chrX 3184234 intron dnc + chrX 4805477 3` UTR CR45516 - chrX_4_3180001 chrX_3180001 RAL-136 1349 chrX 4827975 4827995 chrX 4835339 4835340 Stalker4 6 7363 3.5 3.0 3.2 1.4 7365 chrX 4827975 intergenic not near genes chrX 4831658 intergenic not near genes chrX 4835340 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-136 1350 chrX 4827997 4828002 chrX 4835338 4835343 Stalker4 4 7348 2.5 3.0 2.8 1.1 7346 chrX 4827997 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835343 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-136 1351 chrX 4885776 4885807 chrX 4885866 4885897 10 85 1.0 0.5 0.8 5.6 121 chrX 4885776 intron CG42594 + chrX 4885836 intron CG42594 + chrX 4885897 intron CG42594 + chrX_10_4885001 chrX_4885001 RAL-136 1352 chrX 5096286 5096303 chrX 5103844 5103853 springer 5 7560 1.5 4.5 3.0 1.2 7567 chrX 5096286 intron,intron CG15465 +,rg + chrX 5100070 intron,intron CG15465 +,rg + chrX 5103853 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-136 1353 chrX 5206302 5206333 chrX 5206573 5206605 7 270 1.0 2.0 1.5 2.8 303 chrX 5206302 intron,intron CG15465 +,rg + chrX 5206454 intron,intron CG15465 +,rg + chrX 5206605 intron,intron CG15465 +,rg + chrX_7_5205001 chrX_5205001 RAL-136 1354 chrX 5272823 5272843 chrX 5272909 5272915 5 81 2.5 1.5 2.0 1.7 92 chrX 5272823 intergenic not near genes chrX 5272869 intergenic not near genes chrX 5272915 intergenic not near genes chrX_5_5270001 chrX_5270001 RAL-136 1355 chrX 5884163 5884190 chrX 5884404 5884417 pogo 8 237 4.0 1.0 2.5 2.3 254 chrX 5884163 intron CR45668 - chrX 5884290 intron CR45668 - chrX 5884417 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-136 1356 chrX 6171589 6171610 chrX 6179014 6179028 Quasimodo 7 7429 1.5 3.0 2.2 2.2 7439 chrX 6171589 intron Ca-alpha1T - chrX 6175308 intron Ca-alpha1T - chrX 6179028 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-136 1357 chrX 6215346 6215367 chrX 6215429 6215450 7 81 0.5 3.5 2.0 2.3 104 chrX 6215346 intergenic not near genes chrX 6215398 intergenic not near genes chrX 6215450 intergenic not near genes chrX_7_6215001 chrX_6215001 RAL-136 1358 chrX 6263830 6263857 chrX 6263910 6263920 10 76 4.5 1.5 3.0 2.5 90 chrX 6263830 intron schlank - chrX 6263875 intron schlank - chrX 6263920 intron schlank - chrX_10_6260001 chrX_6260001 RAL-136 1359 chrX 6314193 6314219 chrX 6314282 6314311 9 91 1.5 0.5 1.0 4.5 118 chrX 6314193 intron CG15894 + chrX 6314252 intron CG15894 + chrX 6314311 intron CG15894 + chrX_9_6310001 chrX_6310001 RAL-136 1360 chrX 6320062 6320076 chrX 6320161 6320170 4 102 1.0 2.0 1.5 1.6 108 chrX 6320062 intron CG15894 + chrX 6320116 intron CG15894 + chrX 6320170 intron CG15894 + chrX_4_6320001 chrX_6320001 RAL-136 1361 chrX 6335218 6335240 chrX 6337727 6337746 Tirant 7 2509 0.0 5.0 2.5 2.0 2528 chrX 6335218 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337746 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-136 1362 chrX 6392885 6392904 chrX 6397641 6397669 Doc 8 4761 1.0 3.5 2.2 2.5 4784 chrX 6392885 intergenic not near genes chrX 6395277 intergenic not near genes chrX 6397669 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-136 1363 chrX 6562829 6562848 chrX 6571307 6571317 Tirant 5 8477 4.5 3.5 4.0 1.0 8488 chrX 6562829 intron CG34417 + chrX 6567073 intron CG34417 + chrX 6571317 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-136 1364 chrX 6618465 6618471 chrX 6618542 6618549 5 77 7.0 3.5 5.2 0.8 84 chrX 6618465 intron pigs + chrX 6618507 intron pigs + chrX 6618549 intron pigs + chrX_5_6615001 chrX_6615001 RAL-136 1365 chrX 6897688 6897706 chrX 6897798 6897814 4 110 0.5 3.5 2.0 1.3 126 chrX 6897688 intergenic not near genes chrX 6897751 intergenic not near genes chrX 6897814 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-136 1366 chrX 6934985 6935012 chrX 6935090 6935123 11 106 2.0 3.0 2.5 3.1 138 chrX 6934985 intron CG14431 + chrX 6935054 intron CG14431 + chrX 6935123 intron CG14431 + chrX_11_6935001 chrX_6935001 RAL-136 1367 chrX 7023605 7023632 chrX 7030993 7031019 Tabor 5 7388 5.5 1.5 3.5 1.1 7414 chrX 7023605 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031019 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-136 1368 chrX 7125248 7125278 chrX 7134407 7134437 roo 10 9156 1.0 4.0 2.5 2.9 9189 chrX 7125248 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134437 intergenic not near genes chrX_10_7125001 chrX_7125001 RAL-136 1369 chrX 7268368 7268399 chrX 7268446 7268470 9 74 3.5 1.5 2.5 2.6 102 chrX 7268368 intron CR44357 - chrX 7268419 intron CR44357 - chrX 7268470 intron CR44357 - chrX_9_7265001 chrX_7265001 RAL-136 1370 chrX 7702905 7702931 chrX 7703343 7703355 jockey 10 431 2.5 1.5 2.0 3.3 450 chrX 7702905 intron CHES-1-like - chrX 7703130 intron CHES-1-like - chrX 7703355 intron CHES-1-like - chrX_10_7700001 chrX_7700001 RAL-136 1371 chrX 7749489 7749502 chrX 7749606 7749634 5 126 0.5 1.5 1.0 2.5 145 chrX 7749489 intergenic not near genes chrX 7749562 intergenic not near genes chrX 7749634 intergenic not near genes chrX_5_7745001 chrX_7745001 RAL-136 1372 chrX 7752935 7752959 chrX 7753009 7753027 5 71 2.5 2.0 2.2 1.6 92 chrX 7752935 intergenic not near genes chrX 7752981 intergenic not near genes chrX 7753027 intergenic not near genes chrX_5_7750001 chrX_7750001 RAL-136 1373 chrX 7832438 7832462 chrX 7832527 7832551 5 87 1.5 1.5 1.5 2.0 113 chrX 7832438 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832551 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-136 1374 chrX 7845726 7845757 chrX 7847217 7847248 hopper2 5 1491 2.0 2.5 2.2 1.6 1522 chrX 7845726 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847248 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-136 1375 chrX 7858786 7858812 chrX 7858862 7858888 6 75 0.5 0.0 0.2 5.0 102 chrX 7858786 3` UTR CG1409 + chrX 7858837 intergenic CG1409 + chrX 7858888 intergenic CG1409 + chrX_6_7855001 chrX_7855001 RAL-136 1376 chrX 8085572 8085602 chrX 8085658 8085680 8 85 2.0 1.0 1.5 3.2 108 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085626 intron,5` UTR CG2256 -,CR45535 + chrX 8085680 intron,5` UTR CG2256 -,CR45535 + chrX_8_8085001 chrX_8085001 RAL-136 1377 chrX 8352055 8352068 chrX 8352494 8352494 5 436 2.5 2.0 2.2 1.6 439 chrX 8352055 intron nAChRalpha3 - chrX 8352274 intron nAChRalpha3 - chrX 8352494 intron nAChRalpha3 - chrX_5_8350001 chrX_8350001 RAL-136 1378 chrX 8357785 8357803 chrX 8357867 8357897 4 89 1.5 0.0 0.8 2.2 112 chrX 8357785 intron nAChRalpha3 - chrX 8357841 intron nAChRalpha3 - chrX 8357897 intron nAChRalpha3 - chrX_4_8355001 chrX_8355001 RAL-136 1379 chrX 8364840 8364859 chrX 8365242 8365263 BS 4 403 0.0 1.5 0.8 2.2 423 chrX 8364840 intron nAChRalpha3 - chrX 8365052 intron nAChRalpha3 - chrX 8365263 intron nAChRalpha3 - chrX_4_8365001 chrX_8365001 RAL-136 1380 chrX 8421472 8421481 chrX 8421556 8421568 6 89 3.5 4.5 4.0 1.2 96 chrX 8421472 intron Trf2 + chrX 8421520 intron Trf2 + chrX 8421568 intron Trf2 + chrX_6_8420001 chrX_8420001 RAL-136 1381 chrX 8421486 8421494 chrX 8421550 8421586 4 78 2.5 3.5 3.0 1.0 100 chrX 8421486 intron Trf2 + chrX 8421536 intron Trf2 + chrX 8421586 intron Trf2 + chrX_4_8420001 chrX_8420001 RAL-136 1382 chrX 8744307 8744311 chrX 8744458 8744463 5 152 1.0 2.5 1.8 1.8 156 chrX 8744307 intergenic not near genes chrX 8744385 intergenic not near genes chrX 8744463 intergenic not near genes chrX_5_8740001 chrX_8740001 RAL-136 1383 chrX 8787490 8787500 chrX 8787587 8787590 4 94 2.5 2.0 2.2 1.2 100 chrX 8787490 intron Lim1 - chrX 8787540 intron Lim1 - chrX 8787590 intron Lim1 - chrX_4_8785001 chrX_8785001 RAL-136 1384 chrX 8922334 8922361 chrX 8922758 8922775 jockey 6 424 1.5 2.5 2.0 2.0 441 chrX 8922334 intron rdgA + chrX 8922554 intron rdgA + chrX 8922775 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-136 1385 chrX 8948767 8948792 chrX 8956277 8956295 roo 4 7505 0.5 4.0 2.2 1.2 7528 chrX 8948767 intron rdgA + chrX 8952531 intron rdgA + chrX 8956295 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-136 1386 chrX 9508142 9508165 chrX 9509659 9509670 jockey 4 1514 0.5 2.5 1.5 1.6 1528 chrX 9508142 intron CG32700 - chrX 9508906 intron CG32700 - chrX 9509670 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-136 1387 chrX 9575792 9575817 chrX 9576113 9576141 mdg3 6 321 3.5 4.0 3.8 1.2 349 chrX 9575792 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576141 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-136 1388 chrX 9758057 9758080 chrX 9758132 9758163 4 81 0.0 0.0 0.0 4.0 106 chrX 9758057 intergenic not near genes chrX 9758110 intergenic not near genes chrX 9758163 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-136 1389 chrX 8382093 8382094 chrX 9845361 9845361 6 1463267 4.0 14.0 9.0 0.6 1463268 chrX 8382093 intergenic not near genes chrX 9113727 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_6_9110001 chrX_9110001 RAL-136 1390 chrX 9923394 9923422 chrX 9923483 9923498 13 89 1.0 2.5 1.8 4.6 104 chrX 9923394 intergenic not near genes chrX 9923446 intergenic not near genes chrX 9923498 intergenic not near genes chrX_13_9920001 chrX_9920001 RAL-136 1391 chrX 10035455 10035464 chrX 10035524 10035550 6 73 0.5 3.0 1.8 2.1 95 chrX 10035455 exon Cht6 + chrX 10035502 exon Cht6 + chrX 10035550 exon Cht6 + chrX_6_10035001 chrX_10035001 RAL-136 1392 chrX 10138230 10138241 chrX 10145734 10145742 412 5 7503 3.0 2.0 2.5 1.4 7512 chrX 10138230 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145742 intron,intron RhoU +,CR44894 - chrX_5_10140001 chrX_10140001 RAL-136 1393 chrX 10550332 10550365 chrX 10550410 10550440 11 75 1.5 2.0 1.8 3.9 108 chrX 10550332 intron spri - chrX 10550386 intron spri - chrX 10550440 intron spri - chrX_11_10550001 chrX_10550001 RAL-136 1394 chrX 10550857 10550881 chrX 10552317 10552344 hobo 6 1462 4.5 1.5 3.0 1.5 1487 chrX 10550857 intron spri - chrX 10551600 intron spri - chrX 10552344 intron spri - chrX_6_10550001 chrX_10550001 RAL-136 1395 chrX 10669299 10669306 chrX 10669379 10669387 4 88 2.0 5.0 3.5 0.9 88 chrX 10669299 intron X11Lbeta + chrX 10669343 intron X11Lbeta + chrX 10669387 intron X11Lbeta + chrX_4_10665001 chrX_10665001 RAL-136 1396 chrX 10694154 10694182 chrX 10694233 10694259 9 75 4.5 2.5 3.5 2.0 105 chrX 10694154 intron X11Lbeta + chrX 10694206 intron X11Lbeta + chrX 10694259 intron X11Lbeta + chrX_9_10690001 chrX_10690001 RAL-136 1397 chrX 10933921 10933941 chrX 10934008 10934028 5 85 0.5 2.0 1.2 2.3 107 chrX 10933921 intron Myo10A + chrX 10933974 intron Myo10A + chrX 10934028 intron Myo10A + chrX_5_10930001 chrX_10930001 RAL-136 1398 chrX 11083570 11083588 chrX 11083670 11083676 4 99 1.5 2.0 1.8 1.4 106 chrX 11083570 exon sev - chrX 11083623 exon sev - chrX 11083676 exon sev - chrX_4_11080001 chrX_11080001 RAL-136 1399 chrX 11184261 11184279 chrX 11189332 11189355 flea 7 5073 2.0 1.5 1.8 2.5 5094 chrX 11184261 intergenic not near genes chrX 11186808 intergenic not near genes chrX 11189355 intergenic not near genes chrX_7_11185001 chrX_11185001 RAL-136 1400 chrX 11254168 11254191 chrX 11254279 11254291 6 108 3.0 3.5 3.2 1.4 123 chrX 11254168 intron CG44422 - chrX 11254230 intron CG44422 - chrX 11254291 intron CG44422 - chrX_6_11250001 chrX_11250001 RAL-136 1401 chrX 11312060 11312095 chrX 11319412 11319421 Stalker2 5 7343 1.5 2.0 1.8 1.8 7361 chrX 11312060 intergenic not near genes chrX 11315740 intergenic not near genes chrX 11319421 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-136 1402 chrX 11379768 11379788 chrX 11379913 11379932 5 142 4.0 1.0 2.5 1.4 164 chrX 11379768 intron dlg1 + chrX 11379850 intron dlg1 + chrX 11379932 intron dlg1 + chrX_5_11375001 chrX_11375001 RAL-136 1403 chrX 11633420 11633450 chrX 11640469 11640499 297 12 7050 1.5 3.0 2.2 3.8 7079 chrX 11633420 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640499 intron Ptp10D + chrX_12_11635001 chrX_11635001 RAL-136 1404 chrX 11684868 11684900 chrX 11684994 11685026 7 121 3.0 0.5 1.8 2.5 158 chrX 11684868 intron bif + chrX 11684947 intron bif + chrX 11685026 intron bif + chrX_7_11680001 chrX_11680001 RAL-136 1405 chrX 11922372 11922380 chrX 11922505 11922512 6 131 1.5 2.5 2.0 2.0 140 chrX 11922372 exon Sclp - chrX 11922442 intron Sclp - chrX 11922512 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-136 1406 chrX 12094035 12094056 chrX 12094127 12094141 5 90 2.5 1.5 2.0 1.7 106 chrX 12094035 intron,intron CR43960 +,Ten-a + chrX 12094088 intron,intron CR43960 +,Ten-a + chrX 12094141 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-136 1407 chrX 12094058 12094065 chrX 12094125 12094135 4 78 2.5 1.0 1.8 1.4 77 chrX 12094058 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094135 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-136 1408 chrX 12168153 12168167 chrX 12173586 12173594 I-element 4 5436 2.0 1.5 1.8 1.4 5441 chrX 12168153 intron Ten-a + chrX 12170874 intron Ten-a + chrX 12173594 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-136 1409 chrX 12248746 12248761 chrX 12248838 12248853 4 90 1.0 2.0 1.5 1.6 107 chrX 12248746 intron Ten-a + chrX 12248800 intron Ten-a + chrX 12248853 intron Ten-a + chrX_4_12245001 chrX_12245001 RAL-136 1410 chrX 12532649 12532667 chrX 12532793 12532797 4 138 1.5 0.0 0.8 2.2 148 chrX 12532649 intron CG43921 - chrX 12532723 intron CG43921 - chrX 12532797 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-136 1411 chrX 12781203 12781225 chrX 12781285 12781291 4 76 4.5 0.0 2.2 1.2 88 chrX 12781203 intron CG32647 - chrX 12781247 intron CG32647 - chrX 12781291 intron CG32647 - chrX_4_12780001 chrX_12780001 RAL-136 1412 chrX 12859089 12859115 chrX 12859169 12859195 5 79 3.0 4.0 3.5 1.1 106 chrX 12859089 intron Pde9 - chrX 12859142 intron Pde9 - chrX 12859195 intron Pde9 - chrX_5_12855001 chrX_12855001 RAL-136 1413 chrX 13061356 13061371 chrX 13061462 13061482 6 110 2.0 1.5 1.8 2.1 126 chrX 13061356 intron rad + chrX 13061419 intron rad + chrX 13061482 intron rad + chrX_6_13060001 chrX_13060001 RAL-136 1414 chrX 13146595 13146628 chrX 13146683 13146714 5 86 1.0 2.5 1.8 1.8 119 chrX 13146595 intron CG32645 + chrX 13146654 intron CG32645 + chrX 13146714 intron CG32645 + chrX_5_13145001 chrX_13145001 RAL-136 1415 chrX 13429461 13429496 chrX 13430610 13430630 jockey 6 1146 0.5 3.5 2.0 2.0 1169 chrX 13429461 intergenic not near genes chrX 13430046 intergenic not near genes chrX 13430630 intergenic not near genes chrX_6_13430001 chrX_13430001 RAL-136 1416 chrX 13560568 13560592 chrX 13560641 13560673 5 77 3.5 1.0 2.2 1.6 105 chrX 13560568 intergenic not near genes chrX 13560620 intergenic not near genes chrX 13560673 intergenic not near genes chrX_5_13560001 chrX_13560001 RAL-136 1417 chrX 13843368 13843406 chrX 13843444 13843483 6 77 1.5 0.5 1.0 3.0 115 chrX 13843368 intron AMPdeam - chrX 13843426 intron AMPdeam - chrX 13843483 intron AMPdeam - chrX_6_13840001 chrX_13840001 RAL-136 1418 chrX 13943281 13943300 chrX 13943363 13943391 5 88 0.0 4.0 2.0 1.7 110 chrX 13943281 intron mamo - chrX 13943336 intron mamo - chrX 13943391 intron mamo - chrX_5_13940001 chrX_13940001 RAL-136 1419 chrX 14105020 14105050 chrX 14114171 14114201 roo 5 9147 3.5 3.0 3.2 1.2 9181 chrX 14105020 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-136 1420 chrX 14157598 14157623 chrX 14163255 14163264 297 7 5650 1.0 1.0 1.0 3.5 5666 chrX 14157598 intergenic not near genes chrX 14160431 intergenic not near genes chrX 14163264 intergenic not near genes chrX_7_14160001 chrX_14160001 RAL-136 1421 chrX 14209480 14209489 chrX 14209555 14209579 4 87 1.0 0.5 0.8 2.2 99 chrX 14209480 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209530 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209579 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-136 1422 chrX 14300812 14300830 chrX 14300885 14300893 5 69 5.0 1.5 3.2 1.2 81 chrX 14300812 intergenic not near genes chrX 14300852 intergenic not near genes chrX 14300893 intergenic not near genes chrX_5_14300001 chrX_14300001 RAL-136 1423 chrX 14484979 14484996 chrX 14485061 14485085 5 87 0.0 0.5 0.2 4.2 106 chrX 14484979 intergenic not near genes chrX 14485032 intergenic not near genes chrX 14485085 intergenic not near genes chrX_5_14485001 chrX_14485001 RAL-136 1424 chrX 14636466 14636480 chrX 14641907 14641921 I-element 8 5439 4.5 2.5 3.5 1.8 5455 chrX 14636466 intron NetA - chrX 14639194 intron NetA - chrX 14641921 intron NetA - chrX_8_14635001 chrX_14635001 RAL-136 1425 chrX 14636491 14636494 chrX 14641899 14641912 I-element 4 5419 2.5 2.0 2.2 1.2 5421 chrX 14636491 intron NetA - chrX 14639202 intron NetA - chrX 14641912 intron NetA - chrX_4_14635001 chrX_14635001 RAL-136 1426 chrX 14774986 14775004 chrX 14775063 14775081 4 76 1.0 0.0 0.5 2.7 95 chrX 14774986 intergenic CG5334 + chrX 14775034 intergenic CG5334 + chrX 14775081 intergenic CG5334 + chrX_4_14775001 chrX_14775001 RAL-136 1427 chrX 14778034 14778056 chrX 14782831 14782853 Doc 4 4796 0.5 0.0 0.2 3.3 4819 chrX 14778034 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782853 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-136 1428 chrX 15273706 15273736 chrX 15274871 15274874 1360 4 1154 2.0 0.5 1.2 1.8 1168 chrX 15273706 intergenic not near genes chrX 15274290 intergenic not near genes chrX 15274874 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-136 1429 chrX 15369846 15369863 chrX 15369915 15369943 8 78 2.0 1.5 1.8 2.9 97 chrX 15369846 intron acj6 - chrX 15369894 intron acj6 - chrX 15369943 intron acj6 - chrX_8_15365001 chrX_15365001 RAL-136 1430 chrX 15413053 15413086 chrX 15417349 15417370 Juan 11 4295 3.5 2.0 2.8 2.9 4317 chrX 15413053 intron Cngl - chrX 15415212 intron Cngl - chrX 15417370 intron Cngl - chrX_11_15415001 chrX_15415001 RAL-136 1431 chrX 15435693 15435704 chrX 15436112 15436137 rover 4 426 0.0 4.5 2.2 1.2 444 chrX 15435693 intron Cngl - chrX 15435915 intron Cngl - chrX 15436137 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-136 1432 chrX 15589436 15589461 chrX 15589612 15589631 5 171 3.0 2.5 2.8 1.3 195 chrX 15589436 intron CG9220 - chrX 15589534 intron CG9220 - chrX 15589631 exon CG9220 - chrX_5_15585001 chrX_15585001 RAL-136 1433 chrX 15666218 15666226 chrX 15666295 15666302 4 75 3.5 6.0 4.8 0.7 84 chrX 15666218 intergenic not near genes chrX 15666260 intergenic not near genes chrX 15666302 intergenic not near genes chrX_4_15665001 chrX_15665001 RAL-136 1434 chrX 15678049 15678068 chrX 15678115 15678129 5 66 1.0 4.0 2.5 1.4 80 chrX 15678049 intergenic CG12708 + chrX 15678089 intergenic CG12708 + chrX 15678129 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-136 1435 chrX 16476600 16476612 chrX 16476659 16476687 6 67 1.5 0.0 0.8 3.3 87 chrX 16476600 intron para - chrX 16476644 intron para - chrX 16476687 intron para - chrX_6_16475001 chrX_16475001 RAL-136 1436 chrX 16492662 16492671 chrX 16498226 16498246 mdg3 5 5572 2.5 3.0 2.8 1.3 5584 chrX 16492662 intron para - chrX 16495454 intron para - chrX 16498246 intron para - chrX_5_16495001 chrX_16495001 RAL-136 1437 chrX 16689628 16689656 chrX 16689708 16689713 7 76 3.5 3.0 3.2 1.7 85 chrX 16689628 intron Sep4 - chrX 16689670 intron Sep4 - chrX 16689713 intron Sep4 - chrX_7_16685001 chrX_16685001 RAL-136 1438 chrX 16983076 16983077 chrX 19404963 19404963 4 2421887 4.0 10.5 7.2 0.5 2421887 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404963 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-136 1439 chrX 17011972 17011988 chrX 17012054 17012062 4 79 3.0 2.0 2.5 1.1 90 chrX 17011972 intron CG45002 - chrX 17012017 intron CG45002 - chrX 17012062 intron CG45002 - chrX_4_17010001 chrX_17010001 RAL-136 1440 chrX 17172234 17172253 chrX 17172310 17172315 4 72 0.5 0.0 0.2 3.3 81 chrX 17172234 intron baz + chrX 17172274 intron baz + chrX 17172315 intron baz + chrX_4_17170001 chrX_17170001 RAL-136 1441 chrX 17282878 17282909 chrX 17282955 17282981 13 73 2.0 1.0 1.5 5.2 103 chrX 17282878 intron CG5445 + chrX 17282930 5` UTR CG5445 + chrX 17282981 intron CG5445 + chrX_13_17280001 chrX_17280001 RAL-136 1442 chrX 17352595 17352624 chrX 17352695 17352711 11 99 0.0 0.0 0.0 11.0 116 chrX 17352595 intergenic not near genes chrX 17352653 intergenic not near genes chrX 17352711 intergenic not near genes chrX_11_17350001 chrX_17350001 RAL-136 1443 chrX 17545014 17545033 chrX 17545088 17545114 5 80 3.0 3.5 3.2 1.2 100 chrX 17545014 intron CG43658 - chrX 17545064 intron CG43658 - chrX 17545114 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-136 1444 chrX 17782582 17782598 chrX 17782657 17782668 4 81 4.0 4.5 4.2 0.8 86 chrX 17782582 intergenic not near genes chrX 17782625 intergenic not near genes chrX 17782668 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-136 1445 chrX 17792951 17792984 chrX 17796249 17796277 flea 7 3296 0.5 5.0 2.8 1.8 3326 chrX 17792951 intron OdsH + chrX 17794614 intron OdsH + chrX 17796277 intron OdsH + chrX_7_17790001 chrX_17790001 RAL-136 1446 chrX 18337423 18337457 chrX 18337522 18337545 5 92 1.0 1.5 1.2 2.3 122 chrX 18337423 intron CG6123 - chrX 18337484 intron CG6123 - chrX 18337545 intron CG6123 - chrX_5_18335001 chrX_18335001 RAL-136 1447 chrX 18411297 18411325 chrX 18411392 18411422 4 96 1.5 0.5 1.0 2.0 125 chrX 18411297 intergenic not near genes chrX 18411360 intergenic not near genes chrX 18411422 intergenic not near genes chrX_4_18410001 chrX_18410001 RAL-136 1448 chrX 18427380 18427397 chrX 18427791 18427808 5 411 3.5 0.0 1.8 1.8 428 chrX 18427380 intergenic CG42323 + chrX 18427594 intergenic not near genes chrX 18427808 intergenic not near genes chrX_5_18425001 chrX_18425001 RAL-136 1449 chrX 18429504 18429526 chrX 18434811 18434837 Transpac 4 5310 1.5 2.0 1.8 1.4 5333 chrX 18429504 intergenic not near genes chrX 18432170 intergenic not near genes chrX 18434837 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-136 1450 chrX 18558776 18558802 chrX 18558858 18558878 5 79 1.5 2.0 1.8 1.8 102 chrX 18558776 intron Bx + chrX 18558827 intron Bx + chrX 18558878 intron Bx + chrX_5_18555001 chrX_18555001 RAL-136 1451 chrX 18645015 18645047 chrX 18645112 18645134 7 94 2.5 2.0 2.2 2.2 119 chrX 18645015 intron Rip11 - chrX 18645074 intron Rip11 - chrX 18645134 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-136 1452 chrX 18896519 18896546 chrX 18896629 18896653 4 107 1.5 1.5 1.5 1.6 134 chrX 18896519 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896653 intergenic CG7349 + chrX_4_18895001 chrX_18895001 RAL-136 1453 chrX 19020592 19020760 chrX 19020670 19020867 9 81 2.0 3.0 2.5 2.6 275 chrX 19020592 intron CG43759 + chrX 19020730 intron CG43759 + chrX 19020867 intron CG43759 + chrX_9_19020001 chrX_19020001 RAL-136 1454 chrX 19060414 19060433 chrX 19065198 19065207 Doc 6 4781 1.5 0.0 0.8 3.3 4793 chrX 19060414 intron CG14190 + chrX 19062810 intron CG14190 + chrX 19065207 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-136 1455 chrX 19125693 19125719 chrX 19125822 19125846 4 128 1.0 0.5 0.8 2.2 153 chrX 19125693 intron tgy - chrX 19125770 intron tgy - chrX 19125846 intron tgy - chrX_4_19125001 chrX_19125001 RAL-136 1456 chrX 19136556 19136582 chrX 19143475 19143501 412 4 6914 2.0 3.0 2.5 1.1 6945 chrX 19136556 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143501 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-136 1457 chrX 19380165 19380188 chrX 19380398 19380429 pogo 5 236 4.0 1.5 2.8 1.3 264 chrX 19380165 intron kek5 + chrX 19380297 intron kek5 + chrX 19380429 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-136 1458 chrX 19472129 19472150 chrX 19472689 19472720 jockey 6 564 1.5 6.0 3.8 1.2 591 chrX 19472129 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472720 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-136 1459 chrX 19576567 19576578 chrX 19576638 19576656 5 73 2.0 2.0 2.0 1.7 89 chrX 19576567 intron Tao - chrX 19576612 intron Tao - chrX 19576656 intron Tao - chrX_5_19575001 chrX_19575001 RAL-136 1460 chrX 19593950 19593975 chrX 19594031 19594059 11 82 2.5 4.0 3.2 2.6 109 chrX 19593950 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594059 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-136 1461 chrX 19849811 19849836 chrX 19850130 19850148 7 318 2.0 2.0 2.0 2.3 337 chrX 19849811 intron pico - chrX 19849980 intron pico - chrX 19850148 intron pico - chrX_7_19845001 chrX_19845001 RAL-136 1462 chrX 19983865 19983870 chrX 19983945 19983950 4 80 4.0 1.5 2.8 1.1 85 chrX 19983865 intergenic not near genes chrX 19983908 intergenic not near genes chrX 19983950 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-136 1463 chrX 19983872 19983890 chrX 19983944 19983969 6 78 0.0 1.5 0.8 3.3 97 chrX 19983872 intergenic not near genes chrX 19983920 intergenic not near genes chrX 19983969 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-136 1464 chrX 20105196 20105226 chrX 20105302 20105329 5 106 28.0 28.0 28.0 0.2 133 chrX 20105196 intergenic not near genes chrX 20105262 intergenic not near genes chrX 20105329 intergenic not near genes chrX_5_20105001 chrX_20105001 RAL-136 1465 chrX 20130816 20130818 chrX 20134049 20134084 8 3244 16.0 13.0 14.5 0.5 3268 chrX 20130816 exon CG42582 - chrX 20132450 intergenic not near genes chrX 20134084 intron CG15322 + chrX_8_20130001 chrX_20130001 RAL-136 1466 chrX 20312880 20312911 chrX 20312958 20312989 8 75 2.5 0.5 1.5 3.2 109 chrX 20312880 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312989 intron CG1504 - chrX_8_20310001 chrX_20310001 RAL-136 1467 chrX 20377329 20377351 chrX 20378790 20378801 hobo 9 1462 3.5 5.0 4.2 1.7 1472 chrX 20377329 intergenic not near genes chrX 20378065 intergenic not near genes chrX 20378801 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-136 1468 chrX 20468017 20468035 chrX 20468106 20468122 4 88 0.0 0.0 0.0 4.0 105 chrX 20468017 intron GstT3 + chrX 20468070 intron GstT3 + chrX 20468122 intron GstT3 + chrX_4_20465001 chrX_20465001 RAL-136 1469 chrX 20531767 20531786 chrX 20531860 20531879 4 96 1.0 1.0 1.0 2.0 112 chrX 20531767 intergenic not near genes chrX 20531823 intergenic not near genes chrX 20531879 intergenic not near genes chrX_4_20530001 chrX_20530001 RAL-136 1470 chrX 20575159 20575184 chrX 20575237 20575261 6 75 1.0 3.0 2.0 2.0 102 chrX 20575159 intergenic CG42580 + chrX 20575210 intergenic not near genes chrX 20575261 intergenic not near genes chrX_6_20575001 chrX_20575001 RAL-136 1471 chrX 20710419 20710440 chrX 20710496 20710517 4 73 0.0 1.5 0.8 2.2 98 chrX 20710419 intergenic not near genes chrX 20710468 intergenic not near genes chrX 20710517 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-136 1472 chrX 20836733 20836759 chrX 20844335 20844357 roo 5 7601 0.5 0.0 0.2 4.2 7624 chrX 20836733 intron shakB - chrX 20840545 intron shakB - chrX 20844357 intron shakB - chrX_5_20840001 chrX_20840001 RAL-136 1473 chrX 20915050 20915067 chrX 20915221 20915238 5 171 1.0 1.5 1.2 2.3 188 chrX 20915050 intron shakB - chrX 20915144 intron shakB - chrX 20915238 intron shakB - chrX_5_20915001 chrX_20915001 RAL-136 1474 chrX 20940718 20940755 chrX 20942187 20942223 hobo 15 1466 4.0 4.5 4.2 2.9 1505 chrX 20940718 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942223 intergenic not near genes chrX_15_20940001 chrX_20940001 RAL-136 1475 chrX 21029589 21029686 chrX 21029665 21029836 5 120 0.0 0.0 0.0 5.0 247 chrX 21029589 3` UTR CG1529 - chrX 21029712 3` UTR CG1529 - chrX 21029836 3` UTR CG1529 - chrX_5_21025001 chrX_21025001 RAL-136 1476 chrX 21086147 21086164 chrX 21087157 21087190 jockey 4 1022 1.5 1.0 1.2 1.8 1043 chrX 21086147 intergenic not near genes chrX 21086668 intergenic not near genes chrX 21087190 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-136 1477 chrX 21264735 21264761 chrX 21264811 21264823 10 74 3.5 3.0 3.2 2.4 88 chrX 21264735 intron CG32521 - chrX 21264779 intron CG32521 - chrX 21264823 intron CG32521 - chrX_10_21260001 chrX_21260001 RAL-136 1478 chrX 21293275 21293287 chrX 21293342 21293362 6 72 1.5 4.5 3.0 1.5 87 chrX 21293275 3` UTR CG1718 - chrX 21293318 3` UTR CG1718 - chrX 21293362 exon CG1718 - chrX_6_21290001 chrX_21290001 RAL-136 1479 chrX 21474411 21474432 chrX 21474768 21474795 1731 8 358 4.0 3.0 3.5 1.8 384 chrX 21474411 intergenic not near genes chrX 21474603 intergenic not near genes chrX 21474795 intergenic not near genes chrX_8_21470001 chrX_21470001 RAL-136 1480 chrX 22771504 22771538 chrX 22774795 22774829 297 7 3290 2.0 2.0 2.0 2.3 3325 chrX 22771504 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774829 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-136 1481 chrX 22870883 22870899 chrX 22870974 22870990 5 87 0.5 8.0 4.2 1.0 107 chrX 22870883 intron,3` UTR CG42346 +,CR43656 - chrX 22870936 intron,3` UTR CG42346 +,CR43656 - chrX 22870990 intron,3` UTR CG42346 +,CR43656 - chrX_5_22870001 chrX_22870001 RAL-136 1482 chrX 22992397 22992427 chrX 22992526 22992558 9 126 2.5 2.0 2.2 2.8 161 chrX 22992397 intron,intron stnA -,stnB - chrX 22992478 intron,intron stnA -,stnB - chrX 22992558 intron,intron stnA -,stnB - chrX_9_22990001 chrX_22990001 RAL-136 1483 chrY 975813 975819 chrY 975872 975882 4 106 119.0 124.0 121.5 0.0 69 chrY 975813 intergenic not near genes chrY 975848 intergenic not near genes chrY 975882 intergenic not near genes chrY_4_975001 chrY_975001 RAL-136