SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 12969 12995 chr2L 13156 13182 5 188 10.0 7.0 8.5 0.5 213 chr2L 12969 intron l(2)gl - chr2L 13076 intron l(2)gl - chr2L 13182 intron l(2)gl - chr2L_5_10001 chr2L_10001 RAL-129 2 chr2L 47464 47490 chr2L 52569 52595 jockey 6 5105 2.0 3.0 2.5 1.7 5131 chr2L 47464 intron Cda5 - chr2L 50030 intron Cda5 - chr2L 52595 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-129 3 chr2L 263303 263317 chr2L 263447 263448 5 141 2.5 2.0 2.2 1.6 145 chr2L 263303 intron,3` UTR CG3645 -,CG17075 - chr2L 263376 intron,3` UTR CG3645 -,CG17075 - chr2L 263448 intron,3` UTR CG3645 -,CG17075 - chr2L_5_260001 chr2L_260001 RAL-129 4 chr2L 347887 347909 chr2L 355387 355409 blood 5 7500 3.0 1.5 2.2 1.6 7522 chr2L 347887 3` UTR Plc21C + chr2L 351648 intron Plc21C + chr2L 355409 3` UTR Plc21C + chr2L_5_350001 chr2L_350001 RAL-129 5 chr2L 467365 467493 chr2L 467458 467581 10 88 2.0 2.5 2.2 3.1 216 chr2L 467365 intron CG4297 - chr2L 467473 intron CG4297 - chr2L 467581 intron CG4297 - chr2L_10_465001 chr2L_465001 RAL-129 6 chr2L 590628 590652 chr2L 590729 590753 6 99 1.5 3.0 2.2 1.9 125 chr2L 590628 intron Gsc - chr2L 590690 intron Gsc - chr2L 590753 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-129 7 chr2L 686924 686948 chr2L 695956 695988 roo 6 9035 1.0 3.5 2.2 1.9 9064 chr2L 686924 intron ds - chr2L 691456 intron ds - chr2L 695988 intron ds - chr2L_6_690001 chr2L_690001 RAL-129 8 chr2L 749617 749631 chr2L 749695 749717 4 84 0.0 1.5 0.8 2.2 100 chr2L 749617 intergenic GABA-B-R3 + chr2L 749667 intergenic GABA-B-R3 + chr2L 749717 intergenic GABA-B-R3 + chr2L_4_745001 chr2L_745001 RAL-129 9 chr2L 877850 877854 chr2L 877929 877929 4 78 3.5 2.5 3.0 1.0 79 chr2L 877850 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877929 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-129 10 chr2L 927855 927876 chr2L 928006 928028 5 146 1.0 1.0 1.0 2.5 173 chr2L 927855 intron CG4341 + chr2L 927942 intron CG4341 + chr2L 928028 intron CG4341 + chr2L_5_925001 chr2L_925001 RAL-129 11 chr2L 996741 996755 chr2L 1005836 1005850 roo 4 9094 2.5 4.5 3.5 0.9 9109 chr2L 996741 intergenic not near genes chr2L 1001296 intergenic not near genes chr2L 1005850 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-129 12 chr2L 1156858 1156870 chr2L 1156963 1156975 6 104 2.0 2.0 2.0 2.0 117 chr2L 1156858 intron capt - chr2L 1156916 intron capt - chr2L 1156975 intron capt - chr2L_6_1155001 chr2L_1155001 RAL-129 13 chr2L 1220138 1220153 chr2L 1227597 1227619 blood 4 7464 2.5 1.0 1.8 1.4 7481 chr2L 1220138 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227619 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-129 14 chr2L 1370253 1370273 chr2L 1370418 1370438 6 163 2.0 3.0 2.5 1.7 185 chr2L 1370253 intergenic not near genes chr2L 1370346 intergenic not near genes chr2L 1370438 intergenic not near genes chr2L_6_1370001 chr2L_1370001 RAL-129 15 chr2L 1399168 1399198 chr2L 1399290 1399320 6 122 1.0 2.5 1.8 2.1 152 chr2L 1399168 intron lea - chr2L 1399244 intron lea - chr2L 1399320 intron lea - chr2L_6_1395001 chr2L_1395001 RAL-129 16 chr2L 1409273 1409285 chr2L 1409354 1409367 4 82 2.0 2.5 2.2 1.2 94 chr2L 1409273 intron lea - chr2L 1409320 intron lea - chr2L 1409367 intron lea - chr2L_4_1405001 chr2L_1405001 RAL-129 17 chr2L 1568822 1568853 chr2L 1568921 1568948 7 96 1.5 1.0 1.2 3.2 126 chr2L 1568822 intron haf + chr2L 1568885 intron haf + chr2L 1568948 intron haf + chr2L_7_1565001 chr2L_1565001 RAL-129 18 chr2L 1570685 1570716 chr2L 1573556 1573587 F-element 7 2869 2.0 1.5 1.8 2.5 2902 chr2L 1570685 intron haf + chr2L 1572136 intron haf + chr2L 1573587 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-129 19 chr2L 1590959 1590984 chr2L 1591034 1591060 8 76 1.5 1.0 1.2 3.6 101 chr2L 1590959 intron haf + chr2L 1591010 intron haf + chr2L 1591060 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-129 20 chr2L 1711376 1711385 chr2L 1711681 1711708 mdg3 5 320 2.5 2.0 2.2 1.6 332 chr2L 1711376 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711542 3` UTR frtz - chr2L 1711708 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-129 21 chr2L 1721837 1721848 chr2L 1721907 1721931 4 80 0.0 0.5 0.2 3.3 94 chr2L 1721837 intron Rim2 - chr2L 1721884 intron Rim2 - chr2L 1721931 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-129 22 chr2L 1878247 1878272 chr2L 1878370 1878395 6 124 1.0 0.5 0.8 3.3 148 chr2L 1878247 intron CG31663 - chr2L 1878321 intron CG31663 - chr2L 1878395 intron CG31663 - chr2L_6_1875001 chr2L_1875001 RAL-129 23 chr2L 1910543 1910559 chr2L 1910629 1910644 7 87 2.0 0.5 1.2 3.2 101 chr2L 1910543 intron CG7337 + chr2L 1910594 intron CG7337 + chr2L 1910644 intron CG7337 + chr2L_7_1910001 chr2L_1910001 RAL-129 24 chr2L 2004849 2004871 chr2L 2005291 2005314 5 443 3.5 0.5 2.0 1.7 465 chr2L 2004849 intron CG33543 - chr2L 2005082 intron CG33543 - chr2L 2005314 intron CG33543 - chr2L_5_2005001 chr2L_2005001 RAL-129 25 chr2L 2260806 2260821 chr2L 2260892 2260907 4 85 3.0 2.0 2.5 1.1 101 chr2L 2260806 intergenic not near genes chr2L 2260856 intergenic not near genes chr2L 2260907 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-129 26 chr2L 2311078 2311090 chr2L 2311172 2311186 4 94 0.0 0.5 0.2 3.3 108 chr2L 2311078 intron CG9967 - chr2L 2311132 intron CG9967 - chr2L 2311186 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-129 27 chr2L 2543482 2543509 chr2L 2543589 2543617 7 102 3.0 0.5 1.8 2.5 135 chr2L 2543482 intergenic not near genes chr2L 2543550 intergenic not near genes chr2L 2543617 intergenic not near genes chr2L_7_2540001 chr2L_2540001 RAL-129 28 chr2L 2587836 2587848 chr2L 2587897 2587922 6 71 0.5 0.0 0.2 5.0 86 chr2L 2587836 intergenic not near genes chr2L 2587879 intergenic not near genes chr2L 2587922 intergenic not near genes chr2L_6_2585001 chr2L_2585001 RAL-129 29 chr2L 2618037 2618069 chr2L 2618116 2618148 11 78 2.0 1.0 1.5 4.4 111 chr2L 2618037 intergenic not near genes chr2L 2618092 intergenic not near genes chr2L 2618148 intergenic not near genes chr2L_11_2615001 chr2L_2615001 RAL-129 30 chr2L 2618368 2618380 chr2L 2618454 2618475 4 93 0.5 4.0 2.2 1.2 107 chr2L 2618368 intergenic not near genes chr2L 2618422 intergenic not near genes chr2L 2618475 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-129 31 chr2L 2661213 2661235 chr2L 2663037 2663054 I-element 6 1826 1.5 0.5 1.0 3.0 1841 chr2L 2661213 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663054 intergenic not near genes chr2L_6_2660001 chr2L_2660001 RAL-129 32 chr2L 2698878 2698882 chr2L 2698965 2698968 4 86 1.5 4.0 2.8 1.1 90 chr2L 2698878 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698968 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-129 33 chr2L 2937424 2937451 chr2L 2937501 2937528 5 77 1.5 0.5 1.0 2.5 104 chr2L 2937424 intron lilli + chr2L 2937476 intron lilli + chr2L 2937528 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-129 34 chr2L 3073031 3073041 chr2L 3078234 3078244 copia 6 5202 2.5 4.5 3.5 1.3 5213 chr2L 3073031 intron toc - chr2L 3075638 intron toc - chr2L 3078244 intron toc - chr2L_6_3075001 chr2L_3075001 RAL-129 35 chr2L 3121986 3121993 chr2L 3122071 3122079 4 85 2.5 1.0 1.8 1.4 93 chr2L 3121986 intron toc - chr2L 3122032 intron toc - chr2L 3122079 intron toc - chr2L_4_3120001 chr2L_3120001 RAL-129 36 chr2L 3192208 3192241 chr2L 3192319 3192352 4 111 1.0 1.5 1.2 1.8 144 chr2L 3192208 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-129 37 chr2L 3228226 3228241 chr2L 3228294 3228319 5 74 1.5 2.0 1.8 1.8 93 chr2L 3228226 intergenic not near genes chr2L 3228272 intergenic not near genes chr2L 3228319 intergenic not near genes chr2L_5_3225001 chr2L_3225001 RAL-129 38 chr2L 3286723 3286739 chr2L 3286799 3286822 5 77 3.5 4.0 3.8 1.0 99 chr2L 3286723 intergenic not near genes chr2L 3286772 intergenic not near genes chr2L 3286822 intergenic not near genes chr2L_5_3285001 chr2L_3285001 RAL-129 39 chr2L 3291247 3291270 chr2L 3291326 3291350 4 77 1.5 2.5 2.0 1.3 103 chr2L 3291247 3` UTR CG9664 - chr2L 3291298 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-129 40 chr2L 3482156 3482180 chr2L 3482243 3482270 6 89 0.5 2.0 1.2 2.7 114 chr2L 3482156 intron CG15414 - chr2L 3482213 intron CG15414 - chr2L 3482270 intron CG15414 - chr2L_6_3480001 chr2L_3480001 RAL-129 41 chr2L 3582878 3582907 chr2L 3582955 3582984 7 76 1.0 3.0 2.0 2.3 106 chr2L 3582878 intergenic not near genes chr2L 3582931 intergenic not near genes chr2L 3582984 intergenic not near genes chr2L_7_3580001 chr2L_3580001 RAL-129 42 chr2L 3634102 3634136 chr2L 3634182 3634218 9 81 1.0 2.0 1.5 3.6 116 chr2L 3634102 intron for - chr2L 3634160 intron for - chr2L 3634218 intron for - chr2L_9_3630001 chr2L_3630001 RAL-129 43 chr2L 3649788 3649820 chr2L 3654988 3655021 copia 4 5201 3.0 0.5 1.8 1.4 5233 chr2L 3649788 intron for - chr2L 3652404 intron for - chr2L 3655021 intron for - chr2L_4_3650001 chr2L_3650001 RAL-129 44 chr2L 3702906 3702931 chr2L 3702992 3703017 4 86 0.0 2.0 1.0 2.0 111 chr2L 3702906 5` UTR CR44311 + chr2L 3702962 intergenic CR44311 + chr2L 3703017 intergenic CR44311 + chr2L_4_3700001 chr2L_3700001 RAL-129 45 chr2L 4159412 4159426 chr2L 4159612 4159620 4 198 2.5 0.5 1.5 1.6 208 chr2L 4159412 intergenic not near genes chr2L 4159516 intergenic not near genes chr2L 4159620 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-129 46 chr2L 4285711 4285731 chr2L 4285788 4285809 4 78 1.5 1.0 1.2 1.8 98 chr2L 4285711 intron tutl + chr2L 4285760 intron tutl + chr2L 4285809 intron tutl + chr2L_4_4285001 chr2L_4285001 RAL-129 47 chr2L 4428520 4428539 chr2L 4428826 4428842 6 304 2.0 4.5 3.2 1.4 322 chr2L 4428520 intron CG15431 - chr2L 4428681 intron CG15431 - chr2L 4428842 intron CG15431 - chr2L_6_4425001 chr2L_4425001 RAL-129 48 chr2L 4436393 4436415 chr2L 4436586 4436607 4 192 0.5 3.5 2.0 1.3 214 chr2L 4436393 intron CG15431 - chr2L 4436500 intron CG15431 - chr2L 4436607 intron CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-129 49 chr2L 4601706 4601737 chr2L 4609144 4609178 mdg1 11 7440 2.0 3.5 2.8 2.9 7472 chr2L 4601706 intron dp - chr2L 4605442 intron dp - chr2L 4609178 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-129 50 chr2L 4611460 4611481 chr2L 4611538 4611559 4 78 0.5 1.0 0.8 2.2 99 chr2L 4611460 intron dp - chr2L 4611510 intron dp - chr2L 4611559 intron dp - chr2L_4_4610001 chr2L_4610001 RAL-129 51 chr2L 4819497 4819508 chr2L 4819620 4819630 4 122 2.5 2.0 2.2 1.2 133 chr2L 4819497 intergenic not near genes chr2L 4819564 intergenic not near genes chr2L 4819630 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-129 52 chr2L 4859898 4859923 chr2L 4860163 4860186 8 263 0.5 1.5 1.0 4.0 288 chr2L 4859898 intron pog + chr2L 4860042 intron pog + chr2L 4860186 intron pog + chr2L_8_4860001 chr2L_4860001 RAL-129 53 chr2L 4901138 4901163 chr2L 4901240 4901265 6 102 1.5 4.0 2.8 1.6 127 chr2L 4901138 intron CG3036 + chr2L 4901202 intron CG3036 + chr2L 4901265 intron CG3036 + chr2L_6_4900001 chr2L_4900001 RAL-129 54 chr2L 5038723 5038745 chr2L 5038812 5038834 6 86 3.0 2.5 2.8 1.6 111 chr2L 5038723 exon,5` UTR CG14042 +,SP555 + chr2L 5038778 3` UTR,5` UTR CG14042 +,SP555 + chr2L 5038834 3` UTR,5` UTR CG14042 +,SP555 + chr2L_6_5035001 chr2L_5035001 RAL-129 55 chr2L 5120982 5120999 chr2L 5121076 5121093 7 94 0.5 5.5 3.0 1.8 111 chr2L 5120982 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121093 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-129 56 chr2L 5342771 5342800 chr2L 5345151 5345179 Doc 5 2380 1.0 2.0 1.5 2.0 2408 chr2L 5342771 intergenic not near genes chr2L 5343975 intergenic not near genes chr2L 5345179 intergenic not near genes chr2L_5_5340001 chr2L_5340001 RAL-129 57 chr2L 5378430 5378444 chr2L 5378509 5378523 4 79 0.5 1.5 1.0 2.0 93 chr2L 5378430 intergenic not near genes chr2L 5378476 intergenic not near genes chr2L 5378523 intergenic not near genes chr2L_4_5375001 chr2L_5375001 RAL-129 58 chr2L 5508548 5508560 chr2L 5508624 5508636 4 76 1.5 3.0 2.2 1.2 88 chr2L 5508548 intergenic not near genes chr2L 5508592 intergenic not near genes chr2L 5508636 intergenic not near genes chr2L_4_5505001 chr2L_5505001 RAL-129 59 chr2L 5654806 5654835 chr2L 5654915 5654940 6 108 1.0 1.5 1.2 2.7 134 chr2L 5654806 intron CG31646 - chr2L 5654873 intron CG31646 - chr2L 5654940 intron CG31646 - chr2L_6_5650001 chr2L_5650001 RAL-129 60 chr2L 5784948 5784971 chr2L 5785031 5785054 4 83 2.0 1.0 1.5 1.6 106 chr2L 5784948 intron CG9171 - chr2L 5785001 intron CG9171 - chr2L 5785054 intron CG9171 - chr2L_4_5785001 chr2L_5785001 RAL-129 61 chr2L 5816180 5816214 chr2L 5816256 5816269 6 72 1.5 1.0 1.2 2.7 89 chr2L 5816180 intergenic not near genes chr2L 5816224 intergenic not near genes chr2L 5816269 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-129 62 chr2L 5827716 5827741 chr2L 5836724 5836747 roo 5 9006 4.0 2.0 3.0 1.2 9031 chr2L 5827716 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836747 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-129 63 chr2L 5982623 5982632 chr2L 5982699 5982708 4 76 4.0 2.0 3.0 1.0 85 chr2L 5982623 intron eIF-4a + chr2L 5982666 intron eIF-4a + chr2L 5982708 intron eIF-4a + chr2L_4_5980001 chr2L_5980001 RAL-129 64 chr2L 5982639 5982655 chr2L 5982698 5982732 6 71 1.5 1.5 1.5 2.4 93 chr2L 5982639 intron eIF-4a + chr2L 5982686 intron eIF-4a + chr2L 5982732 intron eIF-4a + chr2L_6_5980001 chr2L_5980001 RAL-129 65 chr2L 6055675 6055696 chr2L 6055761 6055782 6 85 0.5 5.0 2.8 1.6 107 chr2L 6055675 intron CG13995 + chr2L 6055728 intron CG13995 + chr2L 6055782 intron CG13995 + chr2L_6_6055001 chr2L_6055001 RAL-129 66 chr2L 6086226 6086252 chr2L 6086443 6086469 5 217 1.0 0.5 0.8 2.8 243 chr2L 6086226 intron Kr-h1 + chr2L 6086348 intron Kr-h1 + chr2L 6086469 intron Kr-h1 + chr2L_5_6085001 chr2L_6085001 RAL-129 67 chr2L 6185443 6185470 chr2L 6185520 6185546 4 77 1.0 2.5 1.8 1.4 103 chr2L 6185443 intron CG34380 + chr2L 6185494 intron CG34380 + chr2L 6185546 intron CG34380 + chr2L_4_6185001 chr2L_6185001 RAL-129 68 chr2L 6426859 6426888 chr2L 6445118 6445145 roo 5 18259 1.0 1.5 1.2 2.3 18286 chr2L 6426859 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_5_6435001 chr2L_6435001 RAL-129 69 chr2L 6504583 6504593 chr2L 6504664 6504669 5 79 2.5 2.5 2.5 1.4 86 chr2L 6504583 intron CG31637 + chr2L 6504626 intron CG31637 + chr2L 6504669 intron CG31637 + chr2L_5_6500001 chr2L_6500001 RAL-129 70 chr2L 6590096 6590123 chr2L 6590174 6590201 4 78 1.5 3.5 2.5 1.1 105 chr2L 6590096 intron CG11319 - chr2L 6590148 intron CG11319 - chr2L 6590201 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-129 71 chr2L 6626888 6626911 chr2L 6626970 6626994 5 84 3.0 3.0 3.0 1.2 106 chr2L 6626888 intron Oatp26F - chr2L 6626941 intron Oatp26F - chr2L 6626994 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-129 72 chr2L 6771931 6772019 chr2L 6772021 6772105 5 87 0.0 0.0 0.0 5.0 174 chr2L 6771931 intron CG11321 - chr2L 6772018 intron CG11321 - chr2L 6772105 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-129 73 chr2L 6799553 6799572 chr2L 6799641 6799660 5 88 1.5 1.5 1.5 2.0 107 chr2L 6799553 5` UTR CR43610 + chr2L 6799606 intergenic CR43610 +,CG17376 - chr2L 6799660 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-129 74 chr2L 7343329 7343354 chr2L 7350444 7350468 roo 6 7115 1.5 4.0 2.8 1.6 7139 chr2L 7343329 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350468 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-129 75 chr2L 7461045 7461073 chr2L 7461300 7461328 11 254 0.5 2.0 1.2 5.0 283 chr2L 7461045 intron Gr28b - chr2L 7461186 intron Gr28b - chr2L 7461328 intron Gr28b - chr2L_11_7460001 chr2L_7460001 RAL-129 76 chr2L 7493676 7493700 chr2L 7493886 7493910 6 210 1.0 1.0 1.0 3.0 234 chr2L 7493676 intron Ziz - chr2L 7493793 intron Ziz - chr2L 7493910 intron Ziz - chr2L_6_7490001 chr2L_7490001 RAL-129 77 chr2L 7516164 7516196 chr2L 7516251 7516279 7 83 1.5 1.5 1.5 2.8 115 chr2L 7516164 intron RapGAP1 - chr2L 7516222 intron RapGAP1 - chr2L 7516279 intron RapGAP1 - chr2L_7_7515001 chr2L_7515001 RAL-129 78 chr2L 7922755 7922773 chr2L 7922834 7922846 4 78 0.0 1.5 0.8 2.2 91 chr2L 7922755 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922846 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-129 79 chr2L 7959042 7959065 chr2L 7960453 7960474 pogo 5 1409 4.0 0.0 2.0 1.7 1432 chr2L 7959042 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960474 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-129 80 chr2L 7965660 7965674 chr2L 7965863 7965878 roo 7 204 0.5 2.5 1.5 2.8 218 chr2L 7965660 intron Snoo - chr2L 7965769 intron Snoo - chr2L 7965878 intron Snoo - chr2L_7_7965001 chr2L_7965001 RAL-129 81 chr2L 8013617 8013627 chr2L 8018821 8018831 copia 4 5204 3.0 0.0 1.5 1.6 5214 chr2L 8013617 intron Tg + chr2L 8016224 intron Tg + chr2L 8018831 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-129 82 chr2L 8018822 8018838 chr2L 8023604 8023622 Doc 6 4784 0.0 1.5 0.8 3.3 4800 chr2L 8018822 intron Tg + chr2L 8021222 intron Tg + chr2L 8023622 intron Tg + chr2L_6_8020001 chr2L_8020001 RAL-129 83 chr2L 8044071 8044090 chr2L 8044177 8044196 4 106 3.0 1.5 2.2 1.2 125 chr2L 8044071 exon CG7466 + chr2L 8044134 intron CG7466 + chr2L 8044196 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-129 84 chr2L 8089683 8089717 chr2L 8105691 8105725 7 16008 12.5 12.0 12.2 0.5 16042 chr2L 8089683 exon Bsg + chr2L 8097704 intron Bsg + chr2L 8105725 exon Bsg + chr2L_7_8095001 chr2L_8095001 RAL-129 85 chr2L 8106949 8107144 chr2L 8107067 8107246 12 115 14.0 9.0 11.5 1.0 297 chr2L 8106949 exon Bsg + chr2L 8107098 exon Bsg + chr2L 8107246 exon Bsg + chr2L_12_8105001 chr2L_8105001 RAL-129 86 chr2L 8107388 8107418 chr2L 8107750 8107765 6 357 15.5 14.0 14.8 0.4 377 chr2L 8107388 exon Bsg + chr2L 8107576 intron Bsg + chr2L 8107765 exon Bsg + chr2L_6_8105001 chr2L_8105001 RAL-129 87 chr2L 8167144 8167172 chr2L 8167234 8167263 7 85 1.5 1.0 1.2 3.2 119 chr2L 8167144 intron Piezo + chr2L 8167204 intron Piezo + chr2L 8167263 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-129 88 chr2L 8171276 8171300 chr2L 8171357 8171381 5 78 0.0 2.0 1.0 2.5 105 chr2L 8171276 intron Piezo + chr2L 8171328 intron Piezo + chr2L 8171381 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-129 89 chr2L 8244735 8244747 chr2L 8244857 8244869 4 120 0.5 0.5 0.5 2.7 134 chr2L 8244735 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244869 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-129 90 chr2L 8507458 8507470 chr2L 8507523 8507551 4 77 1.0 0.5 0.8 2.2 93 chr2L 8507458 intergenic not near genes chr2L 8507504 intergenic not near genes chr2L 8507551 intergenic not near genes chr2L_4_8505001 chr2L_8505001 RAL-129 91 chr2L 8628999 8629022 chr2L 8629083 8629099 6 82 1.5 1.0 1.2 2.7 100 chr2L 8628999 intron Sema-1a + chr2L 8629049 intron Sema-1a + chr2L 8629099 intron Sema-1a + chr2L_6_8625001 chr2L_8625001 RAL-129 92 chr2L 8723128 8723135 chr2L 8731504 8731512 Tirant 4 8376 3.0 1.5 2.2 1.2 8384 chr2L 8723128 intron raw - chr2L 8727320 intron raw - chr2L 8731512 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-129 93 chr2L 8799825 8799828 chr2L 8799920 8799922 4 104 1.5 1.5 1.5 1.6 97 chr2L 8799825 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799922 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-129 94 chr2L 8815760 8815777 chr2L 8815825 8815838 4 67 0.5 2.0 1.2 1.8 78 chr2L 8815760 intergenic not near genes chr2L 8815799 intergenic not near genes chr2L 8815838 intergenic not near genes chr2L_4_8815001 chr2L_8815001 RAL-129 95 chr2L 9000287 9000298 chr2L 9007797 9007808 roo 5 7510 2.5 0.0 1.2 2.3 7521 chr2L 9000287 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007808 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-129 96 chr2L 9025818 9025852 chr2L 9025902 9025928 5 79 3.5 1.5 2.5 1.4 110 chr2L 9025818 intron,3` UTR CG9582 -,CR44352 - chr2L 9025873 intron,3` UTR CG9582 -,CR44352 - chr2L 9025928 intron,3` UTR CG9582 -,CR44352 - chr2L_5_9025001 chr2L_9025001 RAL-129 97 chr2L 9040034 9040057 chr2L 9040120 9040144 8 85 0.5 1.5 1.0 4.0 110 chr2L 9040034 intergenic not near genes chr2L 9040089 intergenic not near genes chr2L 9040144 intergenic not near genes chr2L_8_9040001 chr2L_9040001 RAL-129 98 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 9.0 8.0 8.5 0.8 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-129 99 chr2L 9202059 9202088 chr2L 9202135 9202163 8 75 1.0 5.0 3.0 2.0 104 chr2L 9202059 intron tai + chr2L 9202111 intron tai + chr2L 9202163 intron tai + chr2L_8_9200001 chr2L_9200001 RAL-129 100 chr2L 9251147 9251174 chr2L 9251243 9251271 6 96 2.5 3.0 2.8 1.6 124 chr2L 9251147 intergenic aust -,borr - chr2L 9251209 intergenic aust -,borr - chr2L 9251271 intergenic borr -,aust - chr2L_6_9250001 chr2L_9250001 RAL-129 101 chr2L 9259220 9259244 chr2L 9259311 9259336 8 89 2.0 2.0 2.0 2.7 116 chr2L 9259220 intron Ggamma30A + chr2L 9259278 intron Ggamma30A + chr2L 9259336 intron Ggamma30A + chr2L_8_9255001 chr2L_9255001 RAL-129 102 chr2L 9264141 9264162 chr2L 9264241 9264259 7 99 2.0 2.5 2.2 2.2 118 chr2L 9264141 intron Ggamma30A + chr2L 9264200 intron Ggamma30A + chr2L 9264259 intron Ggamma30A + chr2L_7_9260001 chr2L_9260001 RAL-129 103 chr2L 9393499 9393528 chr2L 9396466 9396482 jockey 9 2964 2.0 2.5 2.2 2.8 2983 chr2L 9393499 intron Shawl - chr2L 9394990 intron Shawl - chr2L 9396482 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-129 104 chr2L 9423188 9423212 chr2L 9423265 9423289 5 78 3.0 1.0 2.0 1.7 101 chr2L 9423188 intron Mco1 + chr2L 9423238 intron Mco1 + chr2L 9423289 intron Mco1 + chr2L_5_9420001 chr2L_9420001 RAL-129 105 chr2L 9506424 9506456 chr2L 9506574 9506605 7 147 2.5 1.0 1.8 2.5 181 chr2L 9506424 intron CG33298 + chr2L 9506514 intron CG33298 + chr2L 9506605 intron CG33298 + chr2L_7_9505001 chr2L_9505001 RAL-129 106 chr2L 9873129 9873163 chr2L 9873405 9873439 6 272 1.0 1.5 1.2 2.7 310 chr2L 9873129 intron nAChRalpha6 - chr2L 9873284 intron nAChRalpha6 - chr2L 9873439 intron nAChRalpha6 - chr2L_6_9870001 chr2L_9870001 RAL-129 107 chr2L 9944022 9944048 chr2L 9944198 9944224 6 176 2.0 2.0 2.0 2.0 202 chr2L 9944022 intron CG5853 - chr2L 9944123 intron CG5853 - chr2L 9944224 intron CG5853 - chr2L_6_9940001 chr2L_9940001 RAL-129 108 chr2L 10051727 10051752 chr2L 10051811 10051822 7 78 2.5 2.0 2.2 2.2 95 chr2L 10051727 5` UTR CR44874 + chr2L 10051774 5` UTR CR44874 + chr2L 10051822 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-129 109 chr2L 10095632 10095664 chr2L 10095712 10095744 7 80 1.5 0.0 0.8 3.9 112 chr2L 10095632 intron CG44153 - chr2L 10095688 intron CG44153 - chr2L 10095744 intron CG44153 - chr2L_7_10095001 chr2L_10095001 RAL-129 110 chr2L 10105293 10105311 chr2L 10105356 10105380 4 70 1.5 1.0 1.2 1.8 87 chr2L 10105293 intron,intron CG44153 -,CG34109 + chr2L 10105336 intron,intron CG44153 -,CG34109 + chr2L 10105380 intron,intron CG44153 -,CG34109 + chr2L_4_10105001 chr2L_10105001 RAL-129 111 chr2L 10153209 10153237 chr2L 10153288 10153308 7 77 0.5 4.0 2.2 2.2 99 chr2L 10153209 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153308 intron,intron CG44153 -,CG4839 + chr2L_7_10150001 chr2L_10150001 RAL-129 112 chr2L 10155202 10155211 chr2L 10155285 10155296 5 84 0.0 1.5 0.8 2.8 94 chr2L 10155202 intron,exon CG44153 -,CG4839 + chr2L 10155249 intron,3` UTR CG44153 -,CG4839 + chr2L 10155296 intron,3` UTR CG44153 -,CG4839 + chr2L_5_10155001 chr2L_10155001 RAL-129 113 chr2L 10156320 10156355 chr2L 10163790 10163824 blood 9 7469 3.0 0.5 1.8 3.2 7504 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-129 114 chr2L 10407752 10407775 chr2L 10407832 10407856 6 80 0.0 2.5 1.2 2.7 104 chr2L 10407752 intron Ir31a + chr2L 10407804 intron Ir31a + chr2L 10407856 exon Ir31a + chr2L_6_10405001 chr2L_10405001 RAL-129 115 chr2L 10447075 10447087 chr2L 10447185 10447197 5 110 0.0 0.5 0.2 4.2 122 chr2L 10447075 intron loh + chr2L 10447136 intron loh + chr2L 10447197 intron loh + chr2L_5_10445001 chr2L_10445001 RAL-129 116 chr2L 10515360 10515385 chr2L 10515453 10515477 4 92 1.0 0.0 0.5 2.7 117 chr2L 10515360 intron,intron CG45083 -,Fatp - chr2L 10515418 intron,intron CG45083 -,Fatp - chr2L 10515477 intron,intron CG45083 -,Fatp - chr2L_4_10515001 chr2L_10515001 RAL-129 117 chr2L 10580792 10580817 chr2L 10580873 10580898 10 80 3.5 1.5 2.5 2.9 106 chr2L 10580792 intron Trim9 + chr2L 10580845 intron Trim9 + chr2L 10580898 intron Trim9 + chr2L_10_10580001 chr2L_10580001 RAL-129 118 chr2L 10592845 10592874 chr2L 10600506 10600535 opus 5 7661 1.0 0.5 0.8 2.8 7690 chr2L 10592845 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600535 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-129 119 chr2L 10640639 10640670 chr2L 10640728 10640744 10 87 2.5 1.0 1.8 3.6 105 chr2L 10640639 exon CG31872 + chr2L 10640692 exon CG31872 + chr2L 10640744 exon CG31872 + chr2L_10_10640001 chr2L_10640001 RAL-129 120 chr2L 10862854 10862877 chr2L 10864456 10864463 Rt1c 7 1605 1.5 2.5 2.0 2.3 1609 chr2L 10862854 3` UTR CR43807 - chr2L 10863658 intron CR43807 - chr2L 10864463 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-129 121 chr2L 10946949 10946976 chr2L 10956163 10956191 roo 5 9214 1.5 2.0 1.8 1.8 9242 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-129 122 chr2L 11130496 11130524 chr2L 11130586 11130614 6 90 0.0 0.0 0.0 6.0 118 chr2L 11130496 5` UTR RfC38 - chr2L 11130555 5` UTR RfC38 - chr2L 11130614 5` UTR RfC38 - chr2L_6_11130001 chr2L_11130001 RAL-129 123 chr2L 11210410 11210431 chr2L 11210489 11210511 4 80 5.0 4.0 4.5 0.7 101 chr2L 11210410 intergenic ab + chr2L 11210460 intergenic ab + chr2L 11210511 intergenic ab + chr2L_4_11210001 chr2L_11210001 RAL-129 124 chr2L 11335705 11335727 chr2L 11335783 11335805 6 78 1.5 2.5 2.0 2.0 100 chr2L 11335705 intergenic not near genes chr2L 11335755 intergenic not near genes chr2L 11335805 intergenic not near genes chr2L_6_11335001 chr2L_11335001 RAL-129 125 chr2L 11404783 11404812 chr2L 11404858 11404888 10 76 0.5 0.5 0.5 6.7 105 chr2L 11404783 intergenic not near genes chr2L 11404836 intergenic not near genes chr2L 11404888 intergenic not near genes chr2L_10_11400001 chr2L_11400001 RAL-129 126 chr2L 11491126 11491158 chr2L 11491207 11491225 6 78 0.5 1.0 0.8 3.3 99 chr2L 11491126 intergenic not near genes chr2L 11491176 intergenic not near genes chr2L 11491225 intergenic not near genes chr2L_6_11490001 chr2L_11490001 RAL-129 127 chr2L 11537977 11538005 chr2L 11538070 11538084 4 88 1.0 0.0 0.5 2.7 107 chr2L 11537977 intergenic not near genes chr2L 11538030 intergenic not near genes chr2L 11538084 intergenic not near genes chr2L_4_11535001 chr2L_11535001 RAL-129 128 chr2L 11563635 11563670 chr2L 11568839 11568872 copia 5 5202 1.5 1.0 1.2 2.3 5237 chr2L 11563635 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568872 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-129 129 chr2L 11610542 11610571 chr2L 11610621 11610649 6 74 1.0 1.0 1.0 3.0 107 chr2L 11610542 intron,3` UTR kek2 +,spag4 - chr2L 11610596 intron,3` UTR kek2 +,spag4 - chr2L 11610649 intron,3` UTR kek2 +,spag4 - chr2L_6_11610001 chr2L_11610001 RAL-129 130 chr2L 11682903 11682930 chr2L 11682986 11683019 4 88 0.0 1.5 0.8 2.2 116 chr2L 11682903 intergenic not near genes chr2L 11682961 intergenic not near genes chr2L 11683019 intergenic not near genes chr2L_4_11680001 chr2L_11680001 RAL-129 131 chr2L 11713516 11713537 chr2L 11720984 11721005 blood 5 7466 1.5 1.5 1.5 2.0 7489 chr2L 11713516 intergenic not near genes chr2L 11717260 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-129 132 chr2L 11743745 11743776 chr2L 11743822 11743833 6 74 2.0 4.5 3.2 1.4 88 chr2L 11743745 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743789 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743833 exon,3` UTR Vha100-5 +,CR44144 - chr2L_6_11740001 chr2L_11740001 RAL-129 133 chr2L 11752869 11752891 chr2L 11753157 11753180 5 288 1.0 3.0 2.0 1.7 311 chr2L 11752869 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753180 3` UTR CG42470 - chr2L_5_11750001 chr2L_11750001 RAL-129 134 chr2L 11883671 11883707 chr2L 11883753 11883789 6 79 1.0 0.5 0.8 3.3 118 chr2L 11883671 intron Pde1c - chr2L 11883730 intron Pde1c - chr2L 11883789 intron Pde1c - chr2L_6_11880001 chr2L_11880001 RAL-129 135 chr2L 11941721 11941749 chr2L 11941837 11941845 8 113 1.5 3.0 2.2 2.5 124 chr2L 11941721 intergenic not near genes chr2L 11941783 intergenic not near genes chr2L 11941845 intergenic not near genes chr2L_8_11940001 chr2L_11940001 RAL-129 136 chr2L 11948247 11948262 chr2L 11948351 11948366 4 104 2.5 0.0 1.2 1.8 119 chr2L 11948247 exon CG16964 + chr2L 11948306 exon CG16964 + chr2L 11948366 exon CG16964 + chr2L_4_11945001 chr2L_11945001 RAL-129 137 chr2L 12067335 12067354 chr2L 12074387 12074406 297 4 7052 1.0 0.5 0.8 2.2 7071 chr2L 12067335 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074406 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-129 138 chr2L 12097187 12097203 chr2L 12097272 12097287 6 85 1.0 6.0 3.5 1.3 100 chr2L 12097187 exon Mt2 + chr2L 12097237 exon Mt2 + chr2L 12097287 exon Mt2 + chr2L_6_12095001 chr2L_12095001 RAL-129 139 chr2L 12234033 12234061 chr2L 12234128 12234155 5 94 0.0 1.5 0.8 2.8 122 chr2L 12234033 intron aret + chr2L 12234094 intron aret + chr2L 12234155 intron aret + chr2L_5_12230001 chr2L_12230001 RAL-129 140 chr2L 12349631 12349660 chr2L 12349725 12349752 8 92 2.0 1.5 1.8 2.9 121 chr2L 12349631 intron bru-2 + chr2L 12349692 intron bru-2 + chr2L 12349752 intron bru-2 + chr2L_8_12345001 chr2L_12345001 RAL-129 141 chr2L 12426143 12426159 chr2L 12426213 12426236 11 78 3.0 1.5 2.2 3.4 93 chr2L 12426143 exon CG6405 + chr2L 12426190 exon CG6405 + chr2L 12426236 exon CG6405 + chr2L_11_12425001 chr2L_12425001 RAL-129 142 chr2L 12487893 12487918 chr2L 12487973 12487999 4 80 1.5 3.5 2.5 1.1 106 chr2L 12487893 intron bun - chr2L 12487946 intron bun - chr2L 12487999 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-129 143 chr2L 12491497 12491503 chr2L 12491593 12491600 4 97 1.5 2.0 1.8 1.4 103 chr2L 12491497 intron bun - chr2L 12491548 intron bun - chr2L 12491600 intron bun - chr2L_4_12490001 chr2L_12490001 RAL-129 144 chr2L 12518534 12518563 chr2L 12518792 12518822 4 259 1.5 3.0 2.2 1.2 288 chr2L 12518534 intron bun - chr2L 12518678 intron bun - chr2L 12518822 intron bun - chr2L_4_12515001 chr2L_12515001 RAL-129 145 chr2L 12647712 12647722 chr2L 12647792 12647802 4 80 0.5 0.5 0.5 2.7 90 chr2L 12647712 intergenic not near genes chr2L 12647757 intergenic not near genes chr2L 12647802 intergenic not near genes chr2L_4_12645001 chr2L_12645001 RAL-129 146 chr2L 12731058 12731093 chr2L 12735825 12735859 F-element 11 4766 1.0 3.0 2.0 3.7 4801 chr2L 12731058 intron MRP + chr2L 12733458 intron MRP + chr2L 12735859 intron MRP + chr2L_11_12730001 chr2L_12730001 RAL-129 147 chr2L 12739172 12739195 chr2L 12743953 12743976 Doc 4 4781 2.0 2.5 2.2 1.2 4804 chr2L 12739172 exon MRP + chr2L 12741574 intron MRP + chr2L 12743976 intron MRP + chr2L_4_12740001 chr2L_12740001 RAL-129 148 chr2L 12815381 12815389 chr2L 12815516 12815520 5 134 2.5 1.0 1.8 1.8 139 chr2L 12815381 intergenic not near genes chr2L 12815450 intergenic not near genes chr2L 12815520 intergenic not near genes chr2L_5_12815001 chr2L_12815001 RAL-129 149 chr2L 12861695 12861729 chr2L 12863162 12863196 hobo 8 1462 2.0 2.5 2.2 2.5 1501 chr2L 12861695 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863196 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-129 150 chr2L 12894032 12894051 chr2L 12895482 12895501 hobo 4 1455 2.5 1.5 2.0 1.3 1469 chr2L 12894032 intergenic not near genes chr2L 12894766 intergenic not near genes chr2L 12895501 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-129 151 chr2L 13036248 13036268 chr2L 13036487 13036510 X-element 5 241 1.0 0.5 0.8 2.8 262 chr2L 13036248 intron CG9932 - chr2L 13036379 intron CG9932 - chr2L 13036510 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-129 152 chr2L 13139460 13139472 chr2L 13139548 13139558 4 85 4.5 3.0 3.8 0.8 98 chr2L 13139460 intergenic not near genes chr2L 13139509 intergenic not near genes chr2L 13139558 intergenic not near genes chr2L_4_13135001 chr2L_13135001 RAL-129 153 chr2L 13139476 13139486 chr2L 13139543 13139560 4 79 2.0 2.5 2.2 1.2 84 chr2L 13139476 intergenic not near genes chr2L 13139518 intergenic not near genes chr2L 13139560 intergenic not near genes chr2L_4_13135001 chr2L_13135001 RAL-129 154 chr2L 13154117 13154122 chr2L 13154195 13154200 4 78 1.5 0.0 0.8 2.2 83 chr2L 13154117 intergenic not near genes chr2L 13154158 intergenic not near genes chr2L 13154200 intergenic not near genes chr2L_4_13150001 chr2L_13150001 RAL-129 155 chr2L 13231885 13231904 chr2L 13231996 13232010 6 110 3.0 2.5 2.8 1.6 125 chr2L 13231885 intergenic Prosalpha6T + chr2L 13231948 intergenic Prosalpha6T + chr2L 13232010 intergenic Prosalpha6T + chr2L_6_13230001 chr2L_13230001 RAL-129 156 chr2L 13449464 13449496 chr2L 13456900 13456932 Quasimodo 6 7435 2.0 5.5 3.8 1.2 7468 chr2L 13449464 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456932 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-129 157 chr2L 13481449 13481465 chr2L 13482056 13482072 jockey 4 607 3.0 3.0 3.0 1.0 623 chr2L 13481449 intron CG42784 + chr2L 13481760 intron CG42784 + chr2L 13482072 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-129 158 chr2L 13701889 13701905 chr2L 13701968 13701976 4 77 2.5 2.5 2.5 1.1 87 chr2L 13701889 intron CG31814 - chr2L 13701932 intron CG31814 - chr2L 13701976 intron CG31814 - chr2L_4_13700001 chr2L_13700001 RAL-129 159 chr2L 13761287 13761316 chr2L 13761370 13761399 7 80 1.5 0.0 0.8 3.9 112 chr2L 13761287 intron TM9SF4 + chr2L 13761343 intron TM9SF4 + chr2L 13761399 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-129 160 chr2L 13794695 13794725 chr2L 13794795 13794825 6 98 2.5 1.5 2.0 2.0 130 chr2L 13794695 intron Sec71 + chr2L 13794760 intron Sec71 + chr2L 13794825 intron Sec71 + chr2L_6_13790001 chr2L_13790001 RAL-129 161 chr2L 14180073 14180093 chr2L 14180148 14180169 7 76 4.0 0.5 2.2 2.2 96 chr2L 14180073 intron CG43333 - chr2L 14180121 intron CG43333 - chr2L 14180169 intron CG43333 - chr2L_7_14180001 chr2L_14180001 RAL-129 162 chr2L 14246291 14246295 chr2L 14246366 14246373 4 77 0.0 0.5 0.2 3.3 82 chr2L 14246291 intergenic not near genes chr2L 14246332 intergenic not near genes chr2L 14246373 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-129 163 chr2L 14369126 14369162 chr2L 14369242 14369275 4 115 1.0 1.0 1.0 2.0 149 chr2L 14369126 intergenic not near genes chr2L 14369200 intergenic not near genes chr2L 14369275 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-129 164 chr2L 14427501 14427520 chr2L 14427602 14427621 6 100 0.0 1.0 0.5 4.0 120 chr2L 14427501 intergenic not near genes chr2L 14427561 intergenic not near genes chr2L 14427621 intergenic not near genes chr2L_6_14425001 chr2L_14425001 RAL-129 165 chr2L 14554166 14554197 chr2L 14554243 14554273 5 73 2.0 1.5 1.8 1.8 107 chr2L 14554166 intergenic not near genes chr2L 14554220 intergenic not near genes chr2L 14554273 intergenic not near genes chr2L_5_14550001 chr2L_14550001 RAL-129 166 chr2L 14621374 14621391 chr2L 14621474 14621491 5 99 3.5 1.0 2.2 1.6 117 chr2L 14621374 intron osp - chr2L 14621432 intron osp - chr2L 14621491 intron osp - chr2L_5_14620001 chr2L_14620001 RAL-129 167 chr2L 14778813 14778838 chr2L 14779100 14779122 4 286 2.0 5.0 3.5 0.9 309 chr2L 14778813 intergenic not near genes chr2L 14778968 intergenic not near genes chr2L 14779122 intergenic not near genes chr2L_4_14775001 chr2L_14775001 RAL-129 168 chr2L 14889954 14889980 chr2L 14890379 14890404 jockey 8 420 1.5 1.0 1.2 3.6 450 chr2L 14889954 intergenic not near genes chr2L 14890179 intergenic not near genes chr2L 14890404 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-129 169 chr2L 15000861 15000879 chr2L 15000987 15001005 5 127 12.5 11.5 12.0 0.4 144 chr2L 15000861 intergenic not near genes chr2L 15000933 intergenic not near genes chr2L 15001005 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-129 170 chr2L 15031565 15031581 chr2L 15031805 15031819 5 239 0.5 1.5 1.0 2.5 254 chr2L 15031565 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031692 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031819 intron GABA-B-R1 + chr2L_5_15030001 chr2L_15030001 RAL-129 171 chr2L 15077917 15078101 chr2L 15078003 15078159 5 82 0.0 2.5 1.2 2.3 242 chr2L 15077917 intron CG15270 + chr2L 15078038 intron CG15270 + chr2L 15078159 intron CG15270 + chr2L_5_15075001 chr2L_15075001 RAL-129 172 chr2L 15122781 15122806 chr2L 15122861 15122886 4 80 0.0 0.5 0.2 3.3 105 chr2L 15122781 intergenic not near genes chr2L 15122834 intergenic not near genes chr2L 15122886 intergenic not near genes chr2L_4_15120001 chr2L_15120001 RAL-129 173 chr2L 15195382 15195412 chr2L 15195487 15195503 5 96 2.5 0.5 1.5 2.0 121 chr2L 15195382 intron CG4168 - chr2L 15195442 intron CG4168 - chr2L 15195503 intron CG4168 - chr2L_5_15195001 chr2L_15195001 RAL-129 174 chr2L 15586410 15586428 chr2L 15593462 15593480 297 4 7052 4.5 2.0 3.2 1.0 7070 chr2L 15586410 intergenic not near genes chr2L 15589945 intergenic not near genes chr2L 15593480 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-129 175 chr2L 15906184 15906211 chr2L 15906273 15906291 5 82 1.0 1.5 1.2 2.3 107 chr2L 15906184 intron beat-Ib - chr2L 15906238 intron beat-Ib - chr2L 15906291 intron beat-Ib - chr2L_5_15905001 chr2L_15905001 RAL-129 176 chr2L 15956033 15956055 chr2L 15957500 15957519 hobo 5 1466 3.0 3.0 3.0 1.2 1486 chr2L 15956033 intron beat-Ib - chr2L 15956776 intron beat-Ib - chr2L 15957519 intron beat-Ib - chr2L_5_15955001 chr2L_15955001 RAL-129 177 chr2L 15967650 15967677 chr2L 15967732 15967758 5 80 0.5 0.5 0.5 3.3 108 chr2L 15967650 intergenic not near genes chr2L 15967704 intergenic not near genes chr2L 15967758 intergenic not near genes chr2L_5_15965001 chr2L_15965001 RAL-129 178 chr2L 15991365 15991383 chr2L 15991439 15991456 6 74 2.5 3.5 3.0 1.5 91 chr2L 15991365 intergenic not near genes chr2L 15991410 intergenic not near genes chr2L 15991456 intergenic not near genes chr2L_6_15990001 chr2L_15990001 RAL-129 179 chr2L 16027393 16027417 chr2L 16027469 16027487 6 74 1.5 0.5 1.0 3.0 94 chr2L 16027393 intron beat-Ic + chr2L 16027440 intron beat-Ic + chr2L 16027487 intron beat-Ic + chr2L_6_16025001 chr2L_16025001 RAL-129 180 chr2L 16058125 16058140 chr2L 16058266 16058281 8 140 3.5 0.5 2.0 2.7 156 chr2L 16058125 intron beat-Ia + chr2L 16058203 intron beat-Ia + chr2L 16058281 intron beat-Ia + chr2L_8_16055001 chr2L_16055001 RAL-129 181 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 10.5 8.0 9.2 1.1 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-129 182 chr2L 16141167 16141191 chr2L 16146373 16146398 copia 4 5207 1.0 1.0 1.0 2.0 5231 chr2L 16141167 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146398 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-129 183 chr2L 9084336 9084340 chr2L 16217660 16217660 5 7133321 9.0 8.0 8.5 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-129 184 chr2L 16280258 16280287 chr2L 16281429 16281458 1360 6 1165 2.5 0.5 1.5 2.4 1200 chr2L 16280258 intron crp - chr2L 16280858 intron crp - chr2L 16281458 intron crp - chr2L_6_16280001 chr2L_16280001 RAL-129 185 chr2L 16375391 16375417 chr2L 16375481 16375481 4 84 2.0 0.0 1.0 2.0 90 chr2L 16375391 intergenic not near genes chr2L 16375436 intergenic not near genes chr2L 16375481 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-129 186 chr2L 16588829 16588838 chr2L 16588952 16588961 7 123 1.5 2.5 2.0 2.3 132 chr2L 16588829 intron CG42389 + chr2L 16588895 intron CG42389 + chr2L 16588961 intron CG42389 + chr2L_7_16585001 chr2L_16585001 RAL-129 187 chr2L 16590870 16590904 chr2L 16590954 16590985 5 84 1.0 0.5 0.8 2.8 115 chr2L 16590870 intron CG42389 + chr2L 16590928 intron CG42389 + chr2L 16590985 intron CG42389 + chr2L_5_16590001 chr2L_16590001 RAL-129 188 chr2L 17000123 17000154 chr2L 17000244 17000261 6 118 2.5 3.0 2.8 1.6 138 chr2L 17000123 intergenic not near genes chr2L 17000192 intergenic not near genes chr2L 17000261 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-129 189 chr2L 17050025 17050049 chr2L 17050111 17050136 5 87 1.5 4.0 2.8 1.3 111 chr2L 17050025 intergenic not near genes chr2L 17050080 intergenic not near genes chr2L 17050136 intergenic not near genes chr2L_5_17050001 chr2L_17050001 RAL-129 190 chr2L 17052412 17052441 chr2L 17052524 17052553 7 112 1.5 0.5 1.0 3.5 141 chr2L 17052412 intergenic not near genes chr2L 17052482 intergenic not near genes chr2L 17052553 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-129 191 chr2L 17199172 17199188 chr2L 17200639 17200654 hobo 4 1467 0.0 0.5 0.2 3.3 1482 chr2L 17199172 intron beat-IIIc - chr2L 17199913 intron beat-IIIc - chr2L 17200654 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-129 192 chr2L 17238835 17238863 chr2L 17238920 17238941 8 83 2.0 2.0 2.0 2.7 106 chr2L 17238835 intron beat-IIIc - chr2L 17238888 intron beat-IIIc - chr2L 17238941 intron beat-IIIc - chr2L_8_17235001 chr2L_17235001 RAL-129 193 chr2L 17273207 17273226 chr2L 17277974 17278009 F-element 4 4778 0.5 2.5 1.5 1.6 4802 chr2L 17273207 intergenic not near genes chr2L 17275608 intergenic not near genes chr2L 17278009 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-129 194 chr2L 17432014 17432045 chr2L 17432121 17432152 1360 6 106 0.0 0.5 0.2 5.0 138 chr2L 17432014 intron Dif - chr2L 17432083 intron Dif - chr2L 17432152 intron Dif - chr2L_6_17430001 chr2L_17430001 RAL-129 195 chr2L 17623369 17623394 chr2L 17623449 17623474 4 80 1.0 1.5 1.2 1.8 105 chr2L 17623369 intergenic not near genes chr2L 17623422 intergenic not near genes chr2L 17623474 intergenic not near genes chr2L_4_17620001 chr2L_17620001 RAL-129 196 chr2L 17727770 17727788 chr2L 17729446 17729468 hobo 5 1684 2.0 1.0 1.5 2.0 1698 chr2L 17727770 intron CadN - chr2L 17728619 intron CadN - chr2L 17729468 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-129 197 chr2L 17796028 17796045 chr2L 17796108 17796126 5 81 1.5 1.0 1.2 2.3 98 chr2L 17796028 intron CadN2 - chr2L 17796077 intron CadN2 - chr2L 17796126 intron CadN2 - chr2L_5_17795001 chr2L_17795001 RAL-129 198 chr2L 17819925 17819956 chr2L 17825128 17825157 copia 4 5202 0.5 2.5 1.5 1.6 5232 chr2L 17819925 intron CadN2 - chr2L 17822541 intron CadN2 - chr2L 17825157 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-129 199 chr2L 17880004 17880022 chr2L 17880087 17880109 7 86 4.0 2.0 3.0 1.8 105 chr2L 17880004 intergenic not near genes chr2L 17880056 intergenic not near genes chr2L 17880109 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-129 200 chr2L 17944417 17944452 chr2L 17944580 17944613 9 161 3.0 2.0 2.5 2.6 196 chr2L 17944417 intergenic not near genes chr2L 17944515 intergenic not near genes chr2L 17944613 intergenic not near genes chr2L_9_17940001 chr2L_17940001 RAL-129 201 chr2L 17951947 17951952 chr2L 17953413 17953417 hobo 4 1466 1.5 1.5 1.5 1.6 1470 chr2L 17951947 intergenic CR44398 -,CR44397 - chr2L 17952682 intergenic not near genes chr2L 17953417 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-129 202 chr2L 18051877 18051905 chr2L 18061023 18061052 roo 8 9146 2.0 2.5 2.2 2.5 9175 chr2L 18051877 intron rdo + chr2L 18056464 intron rdo + chr2L 18061052 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-129 203 chr2L 18143492 18143495 chr2L 18143549 18143574 4 70 2.0 1.5 1.8 1.4 82 chr2L 18143492 intron Socs36E - chr2L 18143533 intron Socs36E - chr2L 18143574 intron Socs36E - chr2L_4_18140001 chr2L_18140001 RAL-129 204 chr2L 18159719 18159733 chr2L 18162256 18162270 5 2537 8.0 10.5 9.2 0.5 2551 chr2L 18159719 intergenic CG42750 -,CG7200 - chr2L 18160994 3` UTR CG42750 - chr2L 18162270 intron CG42750 - chr2L_5_18160001 chr2L_18160001 RAL-129 205 chr2L 18264077 18264094 chr2L 18264139 18264171 4 73 2.0 0.5 1.2 1.8 94 chr2L 18264077 intron CG42750 - chr2L 18264124 intron CG42750 - chr2L 18264171 intron CG42750 - chr2L_4_18260001 chr2L_18260001 RAL-129 206 chr2L 18274048 18274071 chr2L 18274133 18274157 5 84 3.0 2.5 2.8 1.3 109 chr2L 18274048 intron CG42750 - chr2L 18274102 intron CG42750 - chr2L 18274157 intron CG42750 - chr2L_5_18270001 chr2L_18270001 RAL-129 207 chr2L 18561563 18561580 chr2L 18561655 18561671 7 92 2.0 1.0 1.5 2.8 108 chr2L 18561563 intron Pde11 - chr2L 18561617 intron Pde11 - chr2L 18561671 intron Pde11 - chr2L_7_18560001 chr2L_18560001 RAL-129 208 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 9.0 13.0 11.0 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-129 209 chr2L 18628477 18628488 chr2L 18628551 18628572 5 85 2.5 2.0 2.2 1.6 95 chr2L 18628477 intron MESR3 + chr2L 18628524 intron MESR3 + chr2L 18628572 intron MESR3 + chr2L_5_18625001 chr2L_18625001 RAL-129 210 chr2L 18812572 18812590 chr2L 18812835 18812852 7 263 1.0 4.0 2.5 2.0 280 chr2L 18812572 intergenic CG17325 +,CG42305 + chr2L 18812712 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_7_18810001 chr2L_18810001 RAL-129 211 chr2L 18925229 18925256 chr2L 18925324 18925342 5 89 1.5 3.0 2.2 1.6 113 chr2L 18925229 intron ssp3 - chr2L 18925286 intron ssp3 - chr2L 18925342 intron ssp3 - chr2L_5_18925001 chr2L_18925001 RAL-129 212 chr2L 18981767 18981781 chr2L 18981842 18981853 6 74 1.5 3.0 2.2 1.9 86 chr2L 18981767 intron Swip-1 - chr2L 18981810 intron Swip-1 - chr2L 18981853 intron Swip-1 - chr2L_6_18980001 chr2L_18980001 RAL-129 213 chr2L 19189968 19189987 chr2L 19190122 19190141 4 154 2.0 3.0 2.5 1.1 173 chr2L 19189968 intergenic pigeon +,drl + chr2L 19190054 intergenic pigeon +,drl + chr2L 19190141 intergenic drl +,pigeon + chr2L_4_19190001 chr2L_19190001 RAL-129 214 chr2L 19199668 19199707 chr2L 19199744 19199757 9 69 2.5 1.5 2.0 3.0 89 chr2L 19199668 intron drl + chr2L 19199712 intron drl + chr2L 19199757 intron drl + chr2L_9_19195001 chr2L_19195001 RAL-129 215 chr2L 19345012 19345045 chr2L 19357221 19357254 blood 6 12208 3.0 1.5 2.2 1.9 12242 chr2L 19345012 intron dnt - chr2L 19351133 intron dnt - chr2L 19357254 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-129 216 chr2L 19380509 19380526 chr2L 19380589 19380606 7 80 0.5 1.0 0.8 3.9 97 chr2L 19380509 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380606 intergenic CG17350 + chr2L_7_19380001 chr2L_19380001 RAL-129 217 chr2L 19405618 19405642 chr2L 19405708 19405732 5 90 1.0 0.0 0.5 3.3 114 chr2L 19405618 intron Pax - chr2L 19405675 intron Pax - chr2L 19405732 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-129 218 chr2L 19559187 19559212 chr2L 19559275 19559284 5 84 3.0 0.5 1.8 1.8 97 chr2L 19559187 exon Tep5 + chr2L 19559236 exon Tep5 + chr2L 19559284 exon Tep5 + chr2L_5_19555001 chr2L_19555001 RAL-129 219 chr2L 19562528 19562560 chr2L 19562608 19562629 7 77 2.0 2.5 2.2 2.2 101 chr2L 19562528 exon Tep5 + chr2L 19562578 intron Tep5 + chr2L 19562629 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-129 220 chr2L 19620092 19620130 chr2L 19621079 19621091 jockey 6 983 1.0 1.5 1.2 2.7 999 chr2L 19620092 intron Lar + chr2L 19620592 intron Lar + chr2L 19621091 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-129 221 chr2L 19703538 19703567 chr2L 19712674 19712682 roo 4 9129 1.5 2.0 1.8 1.4 9144 chr2L 19703538 intron Lar + chr2L 19708110 intron Lar + chr2L 19712682 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-129 222 chr2L 19737357 19737388 chr2L 19740825 19740856 1360 6 3468 1.5 2.0 1.8 2.1 3499 chr2L 19737357 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-129 223 chr2L 19774042 19774063 chr2L 19774122 19774122 4 75 2.5 1.5 2.0 1.3 80 chr2L 19774042 intergenic not near genes chr2L 19774082 intergenic not near genes chr2L 19774122 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-129 224 chr2L 19837281 19837294 chr2L 19837360 19837374 4 79 2.5 4.5 3.5 0.9 93 chr2L 19837281 intron sick + chr2L 19837328 intron sick + chr2L 19837374 intron sick + chr2L_4_19835001 chr2L_19835001 RAL-129 225 chr2L 19837296 19837309 chr2L 19837357 19837389 4 74 1.5 3.5 2.5 1.1 93 chr2L 19837296 intron sick + chr2L 19837342 intron sick + chr2L 19837389 intron sick + chr2L_4_19835001 chr2L_19835001 RAL-129 226 chr2L 19901493 19901517 chr2L 19901595 19901619 4 102 2.0 1.0 1.5 1.6 126 chr2L 19901493 intron sick + chr2L 19901556 intron sick + chr2L 19901619 intron sick + chr2L_4_19900001 chr2L_19900001 RAL-129 227 chr2L 19911294 19911313 chr2L 19911380 19911397 5 87 3.0 3.5 3.2 1.2 103 chr2L 19911294 intron,3` UTR sick +,CR43097 - chr2L 19911346 intron,3` UTR sick +,CR43097 - chr2L 19911397 intron,3` UTR sick +,CR43097 - chr2L_5_19910001 chr2L_19910001 RAL-129 228 chr2L 20057053 20057067 chr2L 20057128 20057145 4 76 2.0 0.5 1.2 1.8 92 chr2L 20057053 intergenic not near genes chr2L 20057099 intergenic not near genes chr2L 20057145 intergenic not near genes chr2L_4_20055001 chr2L_20055001 RAL-129 229 chr2L 20272115 20272131 chr2L 20282825 20282842 copia 5 10711 4.5 1.0 2.8 1.3 10727 chr2L 20272115 intergenic not near genes chr2L 20277478 intergenic not near genes chr2L 20282842 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-129 230 chr2L 20493764 20493790 chr2L 20493849 20493858 4 81 1.5 1.5 1.5 1.6 94 chr2L 20493764 intergenic not near genes chr2L 20493811 intergenic not near genes chr2L 20493858 intergenic not near genes chr2L_4_20490001 chr2L_20490001 RAL-129 231 chr2L 20818513 20818524 chr2L 20818594 20818605 6 80 3.0 1.0 2.0 2.0 92 chr2L 20818513 exon CheB38a - chr2L 20818559 intergenic CheB38a - chr2L 20818605 intergenic CheB38a - chr2L_6_20815001 chr2L_20815001 RAL-129 232 chr2L 20851384 20851406 chr2L 20851465 20851489 4 82 3.5 2.0 2.8 1.1 105 chr2L 20851384 intergenic CG14402 + chr2L 20851436 intergenic CG14402 + chr2L 20851489 intergenic not near genes chr2L_4_20850001 chr2L_20850001 RAL-129 233 chr2L 20901476 20901485 chr2L 20902638 20902649 1360 5 1163 0.5 4.0 2.2 1.6 1173 chr2L 20901476 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902649 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-129 234 chr2L 21020271 21020299 chr2L 21023948 21023976 NOF 6 3677 1.0 1.0 1.0 3.0 3705 chr2L 21020271 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023976 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-129 235 chr2L 21041133 21041165 chr2L 21049394 21049426 Tirant 5 8261 2.0 0.5 1.2 2.3 8293 chr2L 21041133 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-129 236 chr2L 21113687 21113714 chr2L 21113780 21113807 5 92 2.0 0.5 1.2 2.3 120 chr2L 21113687 intron Nhe2 + chr2L 21113747 intron Nhe2 + chr2L 21113807 intron Nhe2 + chr2L_5_21110001 chr2L_21110001 RAL-129 237 chr2L 21199236 21199259 chr2L 21199308 21199336 6 76 3.5 0.5 2.0 2.0 100 chr2L 21199236 intergenic CG31624 -,Ret - chr2L 21199286 3` UTR CG31624 - chr2L 21199336 3` UTR CG31624 - chr2L_6_21195001 chr2L_21195001 RAL-129 238 chr2L 21218980 21219006 chr2L 21219254 21219279 4 274 2.0 0.5 1.2 1.8 299 chr2L 21218980 intron Atg18b - chr2L 21219130 intron Atg18b - chr2L 21219279 intron Atg18b - chr2L_4_21215001 chr2L_21215001 RAL-129 239 chr2L 21323427 21323433 chr2L 21323514 21323520 5 87 0.0 1.0 0.5 3.3 93 chr2L 21323427 intergenic not near genes chr2L 21323474 intergenic not near genes chr2L 21323520 intergenic not near genes chr2L_5_21320001 chr2L_21320001 RAL-129 240 chr2L 21825212 21825241 chr2L 21825306 21825335 6 91 0.0 1.5 0.8 3.3 123 chr2L 21825212 intergenic not near genes chr2L 21825274 intergenic not near genes chr2L 21825335 intergenic not near genes chr2L_6_21825001 chr2L_21825001 RAL-129 241 chr2L 21836395 21836424 chr2L 21836484 21836494 9 84 1.0 1.5 1.2 4.1 99 chr2L 21836395 3` UTR tsh + chr2L 21836444 3` UTR tsh + chr2L 21836494 3` UTR tsh + chr2L_9_21835001 chr2L_21835001 RAL-129 242 chr2L 21981689 21981715 chr2L 21990851 21990880 roo 5 9163 1.0 4.0 2.5 1.4 9191 chr2L 21981689 exon CG2528 - chr2L 21986284 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_5_21985001 chr2L_21985001 RAL-129 243 chr2L 22037389 22037399 chr2L 22037691 22037701 INE-1 5 302 0.5 2.0 1.2 2.3 312 chr2L 22037389 intergenic CG41434 + chr2L 22037545 intergenic CG41434 + chr2L 22037701 intergenic CG41434 + chr2L_5_22035001 chr2L_22035001 RAL-129 244 chr2L 22545981 22546000 chr2L 22546076 22546096 5 94 3.0 1.5 2.2 1.6 115 chr2L 22545981 intron CG17490 + chr2L 22546038 intron CG17490 + chr2L 22546096 intron CG17490 + chr2L_5_22545001 chr2L_22545001 RAL-129 245 chr2L 22581989 22582002 chr2L 22583778 22583789 S-element 4 1788 2.5 1.0 1.8 1.4 1800 chr2L 22581989 intron CG17494 + chr2L 22582889 intron CG17494 + chr2L 22583789 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-129 246 chr2L 22676133 22676150 chr2L 22676371 22676387 4 238 1.5 1.5 1.5 1.6 254 chr2L 22676133 intron CG40006 - chr2L 22676260 intron CG40006 - chr2L 22676387 intron CG40006 - chr2L_4_22675001 chr2L_22675001 RAL-129 247 chr2L 22693921 22693950 chr2L 22694007 22694036 8 84 3.0 1.0 2.0 2.7 115 chr2L 22693921 intron CG40006 - chr2L 22693978 intron CG40006 - chr2L 22694036 intron CG40006 - chr2L_8_22690001 chr2L_22690001 RAL-129 248 chr2L 22983948 22983967 chr2L 22984023 22984038 5 74 1.5 1.5 1.5 2.0 90 chr2L 22983948 intron cta + chr2L 22983993 intron cta + chr2L 22984038 intron cta + chr2L_5_22980001 chr2L_22980001 RAL-129 249 chr2R 469959 469983 chr2R 473200 473218 F-element 14 3239 4.5 4.0 4.2 2.7 3259 chr2R 469959 intergenic not near genes chr2R 471588 intergenic not near genes chr2R 473218 intergenic not near genes chr2R_14_470001 chr2R_470001 RAL-129 250 chr2R 529334 529356 chr2R 537954 537981 Max-element 5 8621 1.0 4.5 2.8 1.3 8647 chr2R 529334 intron CG40378 + chr2R 533658 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-129 251 chr2R 1082374 1082384 chr2R 1087126 1087133 Doc 5 4765 1.5 0.5 1.0 2.5 4759 chr2R 1082374 intron rl + chr2R 1084754 intron rl + chr2R 1087133 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-129 252 chr2R 1340064 1340078 chr2R 1340154 1340168 4 90 11.0 8.5 9.8 0.4 104 chr2R 1340064 intergenic not near genes chr2R 1340116 intergenic not near genes chr2R 1340168 intergenic not near genes chr2R_4_1340001 chr2R_1340001 RAL-129 253 chr2R 1732853 1732871 chr2R 1733000 1733018 4 147 1.5 1.5 1.5 1.6 165 chr2R 1732853 intron CG41520 + chr2R 1732936 intron CG41520 + chr2R 1733018 intron CG41520 + chr2R_4_1730001 chr2R_1730001 RAL-129 254 chr2R 2499002 2499018 chr2R 2508149 2508163 roo 4 9146 1.0 3.5 2.2 1.2 9161 chr2R 2499002 intron MFS17 - chr2R 2503582 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-129 255 chr2R 3291818 3292099 chr2R 3914992 3915260 5 623168 7.0 10.5 8.8 0.5 623442 chr2R 3291818 intergenic not near genes chr2R 3603539 intergenic not near genes chr2R 3915260 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-129 256 chr2R 3293755 3293772 chr2R 3293832 3293850 5 77 1.0 5.0 3.0 1.2 95 chr2R 3293755 intergenic not near genes chr2R 3293802 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-129 257 chr2R 3927686 3927718 chr2R 3927783 3927815 8 96 1.5 0.5 1.0 4.0 129 chr2R 3927686 intron uex - chr2R 3927750 intron uex - chr2R 3927815 intron uex - chr2R_8_3925001 chr2R_3925001 RAL-129 258 chr2R 4312958 4312974 chr2R 4313041 4313056 4 83 1.0 1.5 1.2 1.8 98 chr2R 4312958 intergenic not near genes chr2R 4313007 intergenic not near genes chr2R 4313056 intergenic not near genes chr2R_4_4310001 chr2R_4310001 RAL-129 259 chr2R 4350764 4350794 chr2R 4350844 4350873 8 80 0.5 1.5 1.0 4.0 109 chr2R 4350764 exon Gprk1 - chr2R 4350818 intron Gprk1 - chr2R 4350873 intron Gprk1 - chr2R_8_4350001 chr2R_4350001 RAL-129 260 chr2R 4508168 4508195 chr2R 4508248 4508274 8 79 0.5 2.5 1.5 3.2 106 chr2R 4508168 intron CR44100 + chr2R 4508221 5` UTR CR44100 + chr2R 4508274 5` UTR CR44100 + chr2R_8_4505001 chr2R_4505001 RAL-129 261 chr2R 4916111 4916135 chr2R 4916195 4916218 4 84 2.0 1.5 1.8 1.4 107 chr2R 4916111 intergenic not near genes chr2R 4916164 intergenic not near genes chr2R 4916218 intergenic not near genes chr2R_4_4915001 chr2R_4915001 RAL-129 262 chr2R 5341352 5341374 chr2R 5341555 5341570 4 200 1.5 0.0 0.8 2.2 218 chr2R 5341352 intergenic CG10465 - chr2R 5341461 intergenic CG10465 - chr2R 5341570 intergenic not near genes chr2R_4_5340001 chr2R_5340001 RAL-129 263 chr2R 5472370 5472393 chr2R 5472464 5472484 4 92 1.5 2.0 1.8 1.4 114 chr2R 5472370 intron CG30440 - chr2R 5472427 intron CG30440 - chr2R 5472484 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-129 264 chr2R 5473368 5473399 chr2R 5473462 5473494 9 92 3.0 3.5 3.2 2.1 126 chr2R 5473368 intron CG30440 - chr2R 5473431 intron CG30440 - chr2R 5473494 intron CG30440 - chr2R_9_5470001 chr2R_5470001 RAL-129 265 chr2R 5509516 5509549 chr2R 5509612 5509645 6 96 0.0 2.5 1.2 2.7 129 chr2R 5509516 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509645 intron CG30438 + chr2R_6_5505001 chr2R_5505001 RAL-129 266 chr2R 5664296 5664315 chr2R 5664366 5664395 4 76 3.0 2.0 2.5 1.1 99 chr2R 5664296 5` UTR CR45472 + chr2R 5664346 intron CR45472 + chr2R 5664395 intron CR45472 + chr2R_4_5660001 chr2R_5660001 RAL-129 267 chr2R 5724997 5725015 chr2R 5725227 5725245 4 230 1.0 0.0 0.5 2.7 248 chr2R 5724997 intron ap - chr2R 5725121 intron ap - chr2R 5725245 intron ap - chr2R_4_5725001 chr2R_5725001 RAL-129 268 chr2R 5820678 5820706 chr2R 5820772 5820800 8 93 1.0 3.0 2.0 2.7 122 chr2R 5820678 intron dpr12 + chr2R 5820739 intron dpr12 + chr2R 5820800 intron dpr12 + chr2R_8_5820001 chr2R_5820001 RAL-129 269 chr2R 5838541 5838569 chr2R 5838682 5838710 4 140 2.0 5.5 3.8 0.8 169 chr2R 5838541 intron dpr12 + chr2R 5838626 intron dpr12 + chr2R 5838710 intron dpr12 + chr2R_4_5835001 chr2R_5835001 RAL-129 270 chr2R 5859978 5860005 chr2R 5860090 5860116 6 110 1.5 2.5 2.0 2.0 138 chr2R 5859978 3` UTR dpr12 + chr2R 5860047 3` UTR dpr12 + chr2R 5860116 3` UTR dpr12 + chr2R_6_5860001 chr2R_5860001 RAL-129 271 chr2R 5861314 5861320 chr2R 5861411 5861419 4 110 3.0 3.0 3.0 1.0 105 chr2R 5861314 intergenic dpr12 + chr2R 5861366 intergenic not near genes chr2R 5861419 intergenic not near genes chr2R_4_5860001 chr2R_5860001 RAL-129 272 chr2R 5869284 5869302 chr2R 5874360 5874373 flea 5 5074 2.0 4.0 3.0 1.2 5089 chr2R 5869284 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874373 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-129 273 chr2R 5878943 5878952 chr2R 5879007 5879017 5 73 0.5 1.0 0.8 2.8 74 chr2R 5878943 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879017 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-129 274 chr2R 5914138 5914164 chr2R 5914429 5914432 6 286 0.5 2.0 1.2 2.7 294 chr2R 5914138 intron CG43366 + chr2R 5914285 intron CG43366 + chr2R 5914432 intron CG43366 + chr2R_6_5910001 chr2R_5910001 RAL-129 275 chr2R 6051861 6051886 chr2R 6052134 6052159 5 270 3.5 2.5 3.0 1.2 298 chr2R 6051861 intron CCHa2-R + chr2R 6052010 intron CCHa2-R + chr2R 6052159 intron CCHa2-R + chr2R_5_6050001 chr2R_6050001 RAL-129 276 chr2R 6096717 6096751 chr2R 6101910 6101931 BS 5 5190 3.5 3.5 3.5 1.1 5214 chr2R 6096717 intron EcR - chr2R 6099324 intron EcR - chr2R 6101931 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-129 277 chr2R 6129334 6129357 chr2R 6129412 6129435 6 78 0.0 3.5 1.8 2.1 101 chr2R 6129334 intron EcR - chr2R 6129384 intron EcR - chr2R 6129435 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-129 278 chr2R 6177953 6177980 chr2R 6178131 6178158 8 178 1.0 3.0 2.0 2.7 205 chr2R 6177953 intergenic not near genes chr2R 6178056 intergenic not near genes chr2R 6178158 intergenic not near genes chr2R_8_6175001 chr2R_6175001 RAL-129 279 chr2R 6530777 6530793 chr2R 6530854 6530872 5 79 0.0 2.0 1.0 2.5 95 chr2R 6530777 intron jing + chr2R 6530824 intron jing + chr2R 6530872 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-129 280 chr2R 6633213 6633219 chr2R 6633289 6633296 4 76 1.0 2.5 1.8 1.4 83 chr2R 6633213 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633296 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-129 281 chr2R 6876224 6876248 chr2R 6876306 6876315 8 77 3.0 1.5 2.2 2.5 91 chr2R 6876224 intron,intron CR44169 +,Spn42Da - chr2R 6876270 intron,intron CR44169 +,Spn42Da - chr2R 6876315 5` UTR,intron CR44169 +,Spn42Da - chr2R_8_6875001 chr2R_6875001 RAL-129 282 chr2R 6964290 6964316 chr2R 6964366 6964393 5 76 1.0 0.5 0.8 2.8 103 chr2R 6964290 intron,intron mim -,CheB42c - chr2R 6964342 intron,intron mim -,CheB42c - chr2R 6964393 intron,intron mim -,CheB42c - chr2R_5_6960001 chr2R_6960001 RAL-129 283 chr2R 7162329 7162347 chr2R 7162417 7162421 4 83 2.0 4.0 3.0 1.0 92 chr2R 7162329 intron pk + chr2R 7162375 intron pk + chr2R 7162421 intron pk + chr2R_4_7160001 chr2R_7160001 RAL-129 284 chr2R 7171269 7171486 chr2R 7171355 7171641 10 120 0.0 2.0 1.0 5.0 372 chr2R 7171269 intron pk + chr2R 7171455 intron pk + chr2R 7171641 intron pk + chr2R_10_7170001 chr2R_7170001 RAL-129 285 chr2R 7235819 7235846 chr2R 7240910 7240930 jockey 4 5088 3.0 1.0 2.0 1.3 5111 chr2R 7235819 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240930 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-129 286 chr2R 7551692 7551719 chr2R 7551776 7551800 5 85 0.0 2.0 1.0 2.5 108 chr2R 7551692 intron Corin + chr2R 7551746 intron Corin + chr2R 7551800 intron Corin + chr2R_5_7550001 chr2R_7550001 RAL-129 287 chr2R 7629293 7629307 chr2R 7629411 7629424 4 118 0.5 0.0 0.2 3.3 131 chr2R 7629293 intron CG43340 + chr2R 7629358 intron CG43340 + chr2R 7629424 intron CG43340 + chr2R_4_7625001 chr2R_7625001 RAL-129 288 chr2R 7642878 7642892 chr2R 7642950 7642972 6 79 2.0 1.0 1.5 2.4 94 chr2R 7642878 intron CG43340 + chr2R 7642925 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_6_7640001 chr2R_7640001 RAL-129 289 chr2R 7692022 7692034 chr2R 7692103 7692115 4 81 2.0 1.0 1.5 1.6 93 chr2R 7692022 intron CG1399 - chr2R 7692068 intron CG1399 - chr2R 7692115 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-129 290 chr2R 7869189 7869205 chr2R 7873973 7873988 Doc 9 4785 2.0 1.0 1.5 3.6 4799 chr2R 7869189 intron Dgk - chr2R 7871588 intron Dgk - chr2R 7873988 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-129 291 chr2R 7956086 7956116 chr2R 7956162 7956192 4 67 0.0 0.5 0.2 3.3 106 chr2R 7956086 intergenic CG2906 +,CG14764 - chr2R 7956139 intergenic CG2906 +,CG14764 - chr2R 7956192 5` UTR CG2906 + chr2R_4_7955001 chr2R_7955001 RAL-129 292 chr2R 8026818 8026828 chr2R 8026888 8026900 4 74 3.0 1.5 2.2 1.2 82 chr2R 8026818 intergenic CR45267 + chr2R 8026859 intergenic CR45267 + chr2R 8026900 intergenic CR45267 + chr2R_4_8025001 chr2R_8025001 RAL-129 293 chr2R 8236042 8236047 chr2R 8236123 8236125 4 80 4.5 1.0 2.8 1.1 83 chr2R 8236042 intergenic not near genes chr2R 8236084 intergenic not near genes chr2R 8236125 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-129 294 chr2R 8277643 8277667 chr2R 8277735 8277737 6 89 1.0 1.5 1.2 2.7 94 chr2R 8277643 5` UTR CR44280 + chr2R 8277690 5` UTR CR44280 + chr2R 8277737 5` UTR CR44280 + chr2R_6_8275001 chr2R_8275001 RAL-129 295 chr2R 8297437 8297455 chr2R 8297515 8297534 4 78 1.0 1.0 1.0 2.0 97 chr2R 8297437 intergenic not near genes chr2R 8297486 intergenic not near genes chr2R 8297534 intergenic not near genes chr2R_4_8295001 chr2R_8295001 RAL-129 296 chr2R 8398217 8398237 chr2R 8402997 8403018 Doc 4 4780 3.5 2.5 3.0 1.0 4801 chr2R 8398217 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403018 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-129 297 chr2R 8452035 8452065 chr2R 8452118 8452144 10 82 3.0 0.5 1.8 3.6 109 chr2R 8452035 intergenic Mal-A1 - chr2R 8452090 intergenic Mal-A1 - chr2R 8452144 intergenic Mal-A1 - chr2R_10_8450001 chr2R_8450001 RAL-129 298 chr2R 8508763 8508794 chr2R 8508841 8508870 9 75 0.5 2.0 1.2 4.1 107 chr2R 8508763 intron mtt - chr2R 8508816 intron mtt - chr2R 8508870 intron mtt - chr2R_9_8505001 chr2R_8505001 RAL-129 299 chr2R 8525088 8525111 chr2R 8525163 8525188 4 76 0.5 0.5 0.5 2.7 100 chr2R 8525088 intron mtt - chr2R 8525138 intron mtt - chr2R 8525188 intron mtt - chr2R_4_8525001 chr2R_8525001 RAL-129 300 chr2R 8722762 8722792 chr2R 8723003 8723012 pogo 7 236 1.5 2.5 2.0 2.3 250 chr2R 8722762 intron CG14767 - chr2R 8722887 intron CG14767 - chr2R 8723012 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-129 301 chr2R 9079409 9079437 chr2R 9079515 9079542 10 106 2.0 0.5 1.2 4.5 133 chr2R 9079409 intron CG8083 + chr2R 9079476 intron CG8083 + chr2R 9079542 intron CG8083 + chr2R_10_9075001 chr2R_9075001 RAL-129 302 chr2R 9129987 9130015 chr2R 9130070 9130073 6 78 2.5 3.0 2.8 1.6 86 chr2R 9129987 intron CG18659 - chr2R 9130030 intron CG18659 - chr2R 9130073 intron CG18659 - chr2R_6_9130001 chr2R_9130001 RAL-129 303 chr2R 9212694 9212726 chr2R 9213179 9213193 roo 8 479 3.5 3.0 3.2 1.9 499 chr2R 9212694 intergenic CR45309 + chr2R 9212944 intergenic CR45309 + chr2R 9213193 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-129 304 chr2R 9281520 9281538 chr2R 9281596 9281614 4 76 1.5 3.5 2.5 1.1 94 chr2R 9281520 intron Pkn - chr2R 9281567 intron Pkn - chr2R 9281614 intron Pkn - chr2R_4_9280001 chr2R_9280001 RAL-129 305 chr2R 9322370 9322401 chr2R 9322448 9322458 7 73 3.0 2.5 2.8 1.8 88 chr2R 9322370 intron,intron CG13739 -,CG13954 - chr2R 9322414 intron,intron CG13739 -,CG13954 - chr2R 9322458 intron,intron CG13739 -,CG13954 - chr2R_7_9320001 chr2R_9320001 RAL-129 306 chr2R 9368135 9368152 chr2R 9368205 9368225 8 71 1.5 0.0 0.8 4.4 90 chr2R 9368135 intron CG13954 - chr2R 9368180 intron CG13954 - chr2R 9368225 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-129 307 chr2R 9378119 9378136 chr2R 9378201 9378217 7 82 2.0 3.0 2.5 2.0 98 chr2R 9378119 intron CG13954 - chr2R 9378168 intron CG13954 - chr2R 9378217 intron CG13954 - chr2R_7_9375001 chr2R_9375001 RAL-129 308 chr2R 9408230 9408253 chr2R 9408313 9408336 5 83 1.0 4.0 2.5 1.4 106 chr2R 9408230 intron wun - chr2R 9408283 intron wun - chr2R 9408336 intron wun - chr2R_5_9405001 chr2R_9405001 RAL-129 309 chr2R 9510665 9510697 chr2R 9510781 9510810 8 115 1.0 2.5 1.8 2.9 145 chr2R 9510665 intron brp + chr2R 9510738 intron brp + chr2R 9510810 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-129 310 chr2R 9538721 9538742 chr2R 9538797 9538823 6 77 1.0 1.5 1.2 2.7 102 chr2R 9538721 3` UTR brp + chr2R 9538772 3` UTR brp + chr2R 9538823 3` UTR brp + chr2R_6_9535001 chr2R_9535001 RAL-129 311 chr2R 9697248 9697271 chr2R 9697337 9697360 5 89 1.5 3.0 2.2 1.6 112 chr2R 9697248 intergenic not near genes chr2R 9697304 intergenic not near genes chr2R 9697360 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-129 312 chr2R 9699402 9699413 chr2R 9699803 9699815 5 402 1.0 3.0 2.0 1.7 413 chr2R 9699402 intergenic not near genes chr2R 9699608 intergenic not near genes chr2R 9699815 intergenic not near genes chr2R_5_9695001 chr2R_9695001 RAL-129 313 chr2R 9871038 9871065 chr2R 9871524 9871531 roo 4 481 1.5 3.0 2.2 1.2 493 chr2R 9871038 intron cbx - chr2R 9871284 intron cbx - chr2R 9871531 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-129 314 chr2R 9940749 9940770 chr2R 9940830 9940852 4 81 2.0 2.0 2.0 1.3 103 chr2R 9940749 5` UTR Mef2 - chr2R 9940800 5` UTR Mef2 - chr2R 9940852 5` UTR Mef2 - chr2R_4_9940001 chr2R_9940001 RAL-129 315 chr2R 9945441 9945467 chr2R 9945637 9945662 BS 5 193 3.5 0.5 2.0 1.7 221 chr2R 9945441 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945662 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-129 316 chr2R 10005854 10005873 chr2R 10007019 10007038 1360 6 1164 4.0 3.5 3.8 1.2 1184 chr2R 10005854 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007038 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-129 317 chr2R 10010585 10010617 chr2R 10010707 10010739 5 120 2.0 0.5 1.2 2.3 154 chr2R 10010585 intron Pka-R2 - chr2R 10010662 intron Pka-R2 - chr2R 10010739 intron Pka-R2 - chr2R_5_10010001 chr2R_10010001 RAL-129 318 chr2R 10100697 10100720 chr2R 10100783 10100808 4 88 1.5 2.5 2.0 1.3 111 chr2R 10100697 intron 14-3-3zeta + chr2R 10100752 intron 14-3-3zeta + chr2R 10100808 intron 14-3-3zeta + chr2R_4_10100001 chr2R_10100001 RAL-129 319 chr2R 10176880 10176903 chr2R 10186047 10186065 roo 4 9166 2.0 0.0 1.0 2.0 9185 chr2R 10176880 intron KCNQ - chr2R 10181472 intron KCNQ - chr2R 10186065 intron KCNQ - chr2R_4_10180001 chr2R_10180001 RAL-129 320 chr2R 10290118 10290139 chr2R 10290199 10290220 4 79 1.0 1.0 1.0 2.0 102 chr2R 10290118 intron CAP + chr2R 10290169 intron CAP + chr2R 10290220 intron CAP + chr2R_4_10290001 chr2R_10290001 RAL-129 321 chr2R 10313319 10313353 chr2R 10313404 10313441 4 86 1.5 1.5 1.5 1.6 122 chr2R 10313319 intergenic not near genes chr2R 10313380 intergenic not near genes chr2R 10313441 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-129 322 chr2R 10469037 10469055 chr2R 10469146 10469181 7 122 1.5 1.0 1.2 3.2 144 chr2R 10469037 intron CG11777 + chr2R 10469109 intron CG11777 + chr2R 10469181 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-129 323 chr2R 10572016 10572042 chr2R 10572208 10572233 5 192 0.5 3.5 2.0 1.7 217 chr2R 10572016 intron psq + chr2R 10572124 intron psq + chr2R 10572233 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-129 324 chr2R 10677632 10677655 chr2R 10677708 10677731 5 76 0.5 0.5 0.5 3.3 99 chr2R 10677632 intron stan + chr2R 10677682 intron stan + chr2R 10677731 intron stan + chr2R_5_10675001 chr2R_10675001 RAL-129 325 chr2R 11019882 11019908 chr2R 11024948 11024973 jockey 4 5058 5.5 1.5 3.5 0.9 5091 chr2R 11019882 intron luna - chr2R 11022428 intron luna - chr2R 11024973 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-129 326 chr2R 11058690 11058717 chr2R 11058813 11058834 9 121 2.5 2.5 2.5 2.6 144 chr2R 11058690 intron luna - chr2R 11058762 intron luna - chr2R 11058834 intron luna - chr2R_9_11055001 chr2R_11055001 RAL-129 327 chr2R 11102868 11102882 chr2R 11102950 11102963 6 82 4.0 0.0 2.0 2.0 95 chr2R 11102868 intron luna - chr2R 11102916 intron luna - chr2R 11102963 intron luna - chr2R_6_11100001 chr2R_11100001 RAL-129 328 chr2R 11207818 11207844 chr2R 11208009 11208037 BS 7 192 2.5 1.5 2.0 2.3 219 chr2R 11207818 intron shn + chr2R 11207928 intron shn + chr2R 11208037 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-129 329 chr2R 11249176 11249189 chr2R 11249302 11249305 4 123 1.0 0.0 0.5 2.7 129 chr2R 11249176 intergenic CG43112 + chr2R 11249240 intergenic CG43112 + chr2R 11249305 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-129 330 chr2R 11260524 11260551 chr2R 11260630 11260656 5 106 1.0 2.5 1.8 1.8 132 chr2R 11260524 intergenic not near genes chr2R 11260590 intergenic Cpr47Ed - chr2R 11260656 intergenic Cpr47Ed - chr2R_5_11260001 chr2R_11260001 RAL-129 331 chr2R 11344146 11344159 chr2R 11344242 11344255 4 95 0.0 2.0 1.0 2.0 109 chr2R 11344146 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-129 332 chr2R 11415516 11415546 chr2R 11418665 11418695 opus 6 3145 1.5 3.0 2.2 1.9 3179 chr2R 11415516 intron Drip - chr2R 11417106 intron Drip - chr2R 11418695 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-129 333 chr2R 11472651 11472680 chr2R 11473844 11473877 pogo 6 1195 1.5 2.5 2.0 2.0 1226 chr2R 11472651 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-129 334 chr2R 11614623 11614800 chr2R 11614711 11614888 7 88 1.0 2.0 1.5 2.8 265 chr2R 11614623 intron tou - chr2R 11614756 intron tou - chr2R 11614888 intron tou - chr2R_7_11610001 chr2R_11610001 RAL-129 335 chr2R 11641856 11641886 chr2R 11641949 11641980 7 94 1.5 2.0 1.8 2.5 124 chr2R 11641856 3` UTR CG9003 - chr2R 11641918 3` UTR CG9003 - chr2R 11641980 3` UTR CG9003 - chr2R_7_11640001 chr2R_11640001 RAL-129 336 chr2R 11822979 11822998 chr2R 11823056 11823067 7 74 0.0 2.5 1.2 3.2 88 chr2R 11822979 intergenic not near genes chr2R 11823023 intergenic not near genes chr2R 11823067 intergenic not near genes chr2R_7_11820001 chr2R_11820001 RAL-129 337 chr2R 8518784 8518785 chr2R 12066182 12066202 4 3547401 10.0 4.0 7.0 0.5 3547418 chr2R 8518784 intron mtt - chr2R 10292493 intron CAP + chr2R 12066202 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-129 338 chr2R 12146488 12146502 chr2R 12147592 12147624 6 1108 8.5 11.0 9.8 0.6 1136 chr2R 12146488 intron,3` UTR Hen1 +,CG8878 - chr2R 12147056 intron,exon Hen1 +,CG8878 - chr2R 12147624 intron,exon Hen1 +,CG8878 - chr2R_6_12145001 chr2R_12145001 RAL-129 339 chr2R 12145915 12145944 chr2R 12148608 12148639 8 2694 24.0 17.0 20.5 0.4 2724 chr2R 12145915 exon Hen1 + chr2R 12147277 intron,intron Hen1 +,CG8878 - chr2R 12148639 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-129 340 chr2R 12186007 12186037 chr2R 12186102 12186130 7 95 1.0 5.0 3.0 1.8 123 chr2R 12186007 intron Cyp6g1 + chr2R 12186068 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_7_12185001 chr2R_12185001 RAL-129 341 chr2R 12187475 12187477 chr2R 12190091 12190099 8 2619 37.5 30.5 34.0 0.2 2624 chr2R 12187475 exon Cyp6g1 + chr2R 12188787 exon Cyp6g2 - chr2R 12190099 exon Cyp6g2 - chr2R_8_12185001 chr2R_12185001 RAL-129 342 chr2R 12187474 12187497 chr2R 12190100 12190113 8 2623 45.0 29.0 37.0 0.2 2639 chr2R 12187474 exon Cyp6g1 + chr2R 12188794 exon Cyp6g2 - chr2R 12190113 exon Cyp6g2 - chr2R_8_12185001 chr2R_12185001 RAL-129 343 chr2R 12255718 12255740 chr2R 12255837 12255858 4 119 3.0 0.5 1.8 1.4 140 chr2R 12255718 intergenic CG13168 + chr2R 12255788 intergenic CG13168 + chr2R 12255858 intergenic CG13168 + chr2R_4_12255001 chr2R_12255001 RAL-129 344 chr2R 12334884 12334908 chr2R 12334962 12334966 4 68 1.0 1.5 1.2 1.8 82 chr2R 12334884 intergenic CG8490 + chr2R 12334925 intergenic CG8490 + chr2R 12334966 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-129 345 chr2R 12363386 12363417 chr2R 12363817 12363820 7 425 2.0 0.5 1.2 3.2 434 chr2R 12363386 intergenic CG30043 + chr2R 12363603 intergenic CG30043 + chr2R 12363820 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-129 346 chr2R 12385344 12385376 chr2R 12385425 12385457 9 80 0.5 0.0 0.2 7.5 113 chr2R 12385344 intergenic not near genes chr2R 12385400 intergenic not near genes chr2R 12385457 intergenic not near genes chr2R_9_12385001 chr2R_12385001 RAL-129 347 chr2R 12445516 12445521 chr2R 12445591 12445597 4 75 0.0 4.0 2.0 1.3 81 chr2R 12445516 intron Dyb + chr2R 12445556 intron Dyb + chr2R 12445597 intron Dyb + chr2R_4_12445001 chr2R_12445001 RAL-129 348 chr2R 12501705 12501724 chr2R 12503848 12503884 Rt1c 7 2151 1.0 5.0 3.0 1.8 2179 chr2R 12501705 intron fdl - chr2R 12502794 intron fdl - chr2R 12503884 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-129 349 chr2R 12602827 12602835 chr2R 12602911 12602919 5 84 0.0 1.5 0.8 2.8 92 chr2R 12602827 intron Amph + chr2R 12602873 intron Amph + chr2R 12602919 intron Amph + chr2R_5_12600001 chr2R_12600001 RAL-129 350 chr2R 12897463 12897482 chr2R 12897554 12897573 7 91 1.5 0.0 0.8 3.9 110 chr2R 12897463 intron vg + chr2R 12897518 intron vg + chr2R 12897573 intron vg + chr2R_7_12895001 chr2R_12895001 RAL-129 351 chr2R 13129198 13129226 chr2R 13129276 13129300 6 77 0.5 0.5 0.5 4.0 102 chr2R 13129198 intergenic CG3955 -,CG13326 - chr2R 13129249 intergenic CG3955 -,CG13326 - chr2R 13129300 intergenic CG13326 -,CG3955 - chr2R_6_13125001 chr2R_13125001 RAL-129 352 chr2R 13136833 13136859 chr2R 13141631 13141657 Doc 7 4798 3.5 2.0 2.8 1.8 4824 chr2R 13136833 exon Cap-G + chr2R 13139245 intron Cap-G + chr2R 13141657 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-129 353 chr2R 13167433 13167453 chr2R 13167527 13167547 6 94 1.5 0.0 0.8 3.3 114 chr2R 13167433 intron GLaz - chr2R 13167490 intron GLaz - chr2R 13167547 intron GLaz - chr2R_6_13165001 chr2R_13165001 RAL-129 354 chr2R 13432934 13432961 chr2R 13433010 13433037 6 76 0.5 2.0 1.2 2.7 103 chr2R 13432934 intron CG42321 - chr2R 13432986 intron CG42321 - chr2R 13433037 intron,5` UTR CG42321 -,CG30065 + chr2R_6_13430001 chr2R_13430001 RAL-129 355 chr2R 13547083 13547107 chr2R 13547278 13547302 5 195 2.0 0.5 1.2 2.3 219 chr2R 13547083 intron CG6145 - chr2R 13547192 intron CG6145 - chr2R 13547302 intron CG6145 - chr2R_5_13545001 chr2R_13545001 RAL-129 356 chr2R 13589994 13590030 chr2R 13590093 13590129 7 105 11.0 10.0 10.5 0.6 135 chr2R 13589994 intron,intron CG6191 -,CG45088 - chr2R 13590062 intron,intron CG6191 -,CG45088 - chr2R 13590129 intron,intron CG6191 -,CG45088 - chr2R_7_13590001 chr2R_13590001 RAL-129 357 chr2R 13702829 13702841 chr2R 13702905 13702918 4 77 1.5 3.0 2.2 1.2 89 chr2R 13702829 intron fas + chr2R 13702874 intron fas + chr2R 13702918 intron fas + chr2R_4_13700001 chr2R_13700001 RAL-129 358 chr2R 13768978 13769010 chr2R 13769077 13769109 8 99 1.5 4.5 3.0 2.0 131 chr2R 13768978 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-129 359 chr2R 13905615 13905629 chr2R 13907597 13907611 Rt1a 4 1982 1.0 3.0 2.0 1.3 1996 chr2R 13905615 intron shot - chr2R 13906613 intron shot - chr2R 13907611 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-129 360 chr2R 14018161 14018174 chr2R 14018245 14018258 6 84 2.5 3.0 2.8 1.6 97 chr2R 14018161 intron mam + chr2R 14018210 intron mam + chr2R 14018258 intron mam + chr2R_6_14015001 chr2R_14015001 RAL-129 361 chr2R 14081348 14081380 chr2R 14081446 14081477 4 97 1.0 1.5 1.2 1.8 129 chr2R 14081348 intron Prosap - chr2R 14081412 intron Prosap - chr2R 14081477 intron Prosap - chr2R_4_14080001 chr2R_14080001 RAL-129 362 chr2R 14497389 14497414 chr2R 14498555 14498580 1360 7 1165 0.5 2.5 1.5 2.8 1191 chr2R 14497389 3` UTR Cpsf160 - chr2R 14497984 intron Cpsf160 - chr2R 14498580 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-129 363 chr2R 14566445 14566477 chr2R 14566532 14566563 7 86 2.5 1.0 1.8 2.5 118 chr2R 14566445 intron ttv + chr2R 14566504 intron ttv + chr2R 14566563 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-129 364 chr2R 14796338 14796359 chr2R 14796435 14796456 4 97 2.0 1.0 1.5 1.6 118 chr2R 14796338 intron kn - chr2R 14796397 intron kn - chr2R 14796456 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-129 365 chr2R 14889210 14889230 chr2R 14897818 14897838 Max-element 5 8604 0.0 0.0 0.0 5.0 8628 chr2R 14889210 intergenic Cyp6a8 - chr2R 14893524 intergenic not near genes chr2R 14897838 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-129 366 chr2R 14999926 14999956 chr2R 15000009 15000040 5 81 1.0 0.5 0.8 2.8 114 chr2R 14999926 intergenic not near genes chr2R 14999983 intergenic not near genes chr2R 15000040 intergenic not near genes chr2R_5_14995001 chr2R_14995001 RAL-129 367 chr2R 15002132 15002150 chr2R 15002207 15002231 8 83 1.5 0.5 1.0 4.0 99 chr2R 15002132 intergenic not near genes chr2R 15002182 intergenic not near genes chr2R 15002231 intergenic not near genes chr2R_8_15000001 chr2R_15000001 RAL-129 368 chr2R 15004724 15004755 chr2R 15005053 15005084 jockey 7 329 2.0 2.5 2.2 2.2 360 chr2R 15004724 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005084 intergenic not near genes chr2R_7_15000001 chr2R_15000001 RAL-129 369 chr2R 15051087 15051107 chr2R 15051169 15051188 6 82 0.5 2.0 1.2 2.7 101 chr2R 15051087 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051188 intergenic not near genes chr2R_6_15050001 chr2R_15050001 RAL-129 370 chr2R 15084984 15084997 chr2R 15092033 15092046 297 4 7048 3.0 3.5 3.2 1.0 7062 chr2R 15084984 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092046 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-129 371 chr2R 15175469 15175482 chr2R 15175550 15175563 5 81 2.0 0.0 1.0 2.5 94 chr2R 15175469 intron igl + chr2R 15175516 intron igl + chr2R 15175563 intron igl + chr2R_5_15175001 chr2R_15175001 RAL-129 372 chr2R 15187761 15187793 chr2R 15187839 15187871 11 78 0.0 2.0 1.0 5.5 110 chr2R 15187761 intron igl + chr2R 15187816 intron igl + chr2R 15187871 intron igl + chr2R_11_15185001 chr2R_15185001 RAL-129 373 chr2R 15196093 15196101 chr2R 15196189 15196196 5 96 3.0 3.5 3.2 1.2 103 chr2R 15196093 intergenic not near genes chr2R 15196144 intergenic not near genes chr2R 15196196 intergenic not near genes chr2R_5_15195001 chr2R_15195001 RAL-129 374 chr2R 15296159 15296323 chr2R 15296242 15296411 6 99 1.5 1.5 1.5 2.4 252 chr2R 15296159 intron Trpm - chr2R 15296285 intron Trpm - chr2R 15296411 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-129 375 chr2R 15306240 15306265 chr2R 15306572 15306600 4 334 1.5 2.0 1.8 1.4 360 chr2R 15306240 intron Trpm - chr2R 15306420 intron Trpm - chr2R 15306600 intron Trpm - chr2R_4_15305001 chr2R_15305001 RAL-129 376 chr2R 15558552 15558564 chr2R 15558631 15558642 5 78 1.5 0.0 0.8 2.8 90 chr2R 15558552 intron CG12963 + chr2R 15558597 intron CG12963 + chr2R 15558642 intron CG12963 + chr2R_5_15555001 chr2R_15555001 RAL-129 377 chr2R 15679107 15679131 chr2R 15679191 15679210 7 83 0.0 1.0 0.5 4.7 103 chr2R 15679107 intergenic CG8207 -,Vha14-1 - chr2R 15679158 intergenic CG8207 -,Vha14-1 - chr2R 15679210 intergenic Vha14-1 -,CG8207 - chr2R_7_15675001 chr2R_15675001 RAL-129 378 chr2R 15700238 15700273 chr2R 15700353 15700388 6 114 1.0 1.0 1.0 3.0 150 chr2R 15700238 intron,5` UTR CG30080 -,CG42662 - chr2R 15700313 intron,5` UTR CG30080 -,CG42662 - chr2R 15700388 intron,5` UTR CG30080 -,CG42662 - chr2R_6_15700001 chr2R_15700001 RAL-129 379 chr2R 15710346 15710374 chr2R 15710691 15710720 6 344 1.0 2.0 1.5 2.4 374 chr2R 15710346 intergenic not near genes chr2R 15710533 intergenic not near genes chr2R 15710720 intergenic not near genes chr2R_6_15710001 chr2R_15710001 RAL-129 380 chr2R 15740702 15740715 chr2R 15740784 15740797 4 81 1.0 2.0 1.5 1.6 95 chr2R 15740702 intron CG30089 + chr2R 15740750 intron CG30089 + chr2R 15740797 intron CG30089 + chr2R_4_15740001 chr2R_15740001 RAL-129 381 chr2R 15750022 15750043 chr2R 15750112 15750133 4 90 1.0 2.0 1.5 1.6 111 chr2R 15750022 intron CG30089 + chr2R 15750078 intron CG30089 + chr2R 15750133 intron CG30089 + chr2R_4_15750001 chr2R_15750001 RAL-129 382 chr2R 16236226 16236242 chr2R 16236300 16236319 5 73 2.5 2.0 2.2 1.6 93 chr2R 16236226 intergenic CG3687 + chr2R 16236272 intergenic CG3687 + chr2R 16236319 intergenic CG3687 + chr2R_5_16235001 chr2R_16235001 RAL-129 383 chr2R 16380141 16380156 chr2R 16380239 16380254 5 98 1.5 2.0 1.8 1.8 113 chr2R 16380141 3` UTR CR45317 - chr2R 16380198 intergenic CR45317 -,CR45316 +,CG43187 + chr2R 16380254 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_5_16380001 chr2R_16380001 RAL-129 384 chr2R 16552054 16552077 chr2R 16552143 16552166 6 86 2.0 2.0 2.0 2.0 112 chr2R 16552054 intergenic Syn2 + chr2R 16552110 intergenic Syn2 + chr2R 16552166 intergenic Syn2 + chr2R_6_16550001 chr2R_16550001 RAL-129 385 chr2R 16601522 16601543 chr2R 16601633 16601654 5 111 2.5 1.0 1.8 1.8 132 chr2R 16601522 intron CG8303 - chr2R 16601588 intron CG8303 - chr2R 16601654 intron CG8303 - chr2R_5_16600001 chr2R_16600001 RAL-129 386 chr2R 16617060 16617081 chr2R 16617139 16617154 10 78 2.0 1.0 1.5 4.0 94 chr2R 16617060 intron CG5065 + chr2R 16617107 intron CG5065 + chr2R 16617154 intron CG5065 + chr2R_10_16615001 chr2R_16615001 RAL-129 387 chr2R 16619979 16620000 chr2R 16620051 16620080 9 80 3.0 0.5 1.8 3.2 101 chr2R 16619979 intron CG5065 + chr2R 16620030 intron CG5065 + chr2R 16620080 intron CG5065 + chr2R_9_16620001 chr2R_16620001 RAL-129 388 chr2R 16847057 16847074 chr2R 16847187 16847202 6 129 3.0 1.5 2.2 1.9 145 chr2R 16847057 intergenic not near genes chr2R 16847130 intergenic not near genes chr2R 16847202 intergenic not near genes chr2R_6_16845001 chr2R_16845001 RAL-129 389 chr2R 16972273 16972288 chr2R 16972438 16972452 4 164 0.0 3.5 1.8 1.4 179 chr2R 16972273 intergenic not near genes chr2R 16972362 intergenic not near genes chr2R 16972452 intergenic not near genes chr2R_4_16970001 chr2R_16970001 RAL-129 390 chr2R 17147245 17147266 chr2R 17152275 17152296 jockey 6 5031 3.5 1.0 2.2 1.9 5051 chr2R 17147245 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152296 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-129 391 chr2R 17236511 17236527 chr2R 17241715 17241727 copia 7 5203 2.0 1.5 1.8 2.5 5216 chr2R 17236511 intron mbl + chr2R 17239119 intron mbl + chr2R 17241727 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-129 392 chr2R 17270226 17270241 chr2R 17270414 17270428 4 188 2.0 1.5 1.8 1.4 202 chr2R 17270226 intron mbl + chr2R 17270327 intron mbl + chr2R 17270428 intron mbl + chr2R_4_17270001 chr2R_17270001 RAL-129 393 chr2R 17459008 17459038 chr2R 17459092 17459123 6 84 1.5 1.0 1.2 2.7 115 chr2R 17459008 intron CG14478 + chr2R 17459066 intron CG14478 + chr2R 17459123 intron CG14478 + chr2R_6_17455001 chr2R_17455001 RAL-129 394 chr2R 17478856 17478863 chr2R 17478909 17478934 8 66 0.0 1.0 0.5 5.3 78 chr2R 17478856 3` UTR,intron CG43110 -,veil + chr2R 17478895 3` UTR,intron CG43110 -,veil + chr2R 17478934 3` UTR,intron CG43110 -,veil + chr2R_8_17475001 chr2R_17475001 RAL-129 395 chr2R 17485917 17485931 chr2R 17490687 17490701 F-element 5 4770 2.0 2.0 2.0 1.7 4784 chr2R 17485917 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488309 intron NT5E-2 + chr2R 17490701 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-129 396 chr2R 17581755 17581774 chr2R 17581845 17581864 6 90 0.5 0.5 0.5 4.0 109 chr2R 17581755 intergenic Dcr-2 -,CG6484 - chr2R 17581810 intergenic CG6484 -,Dcr-2 - chr2R 17581864 intergenic CG6484 -,Dcr-2 - chr2R_6_17580001 chr2R_17580001 RAL-129 397 chr2R 17760667 17760699 chr2R 17760794 17760826 7 127 1.0 0.0 0.5 4.7 159 chr2R 17760667 intergenic HLH54F +,CG5009 + chr2R 17760746 intergenic CG5009 +,HLH54F + chr2R 17760826 intergenic CG5009 +,HLH54F + chr2R_7_17760001 chr2R_17760001 RAL-129 398 chr2R 17982927 17982946 chr2R 17983010 17983031 4 84 1.5 0.5 1.0 2.0 104 chr2R 17982927 intron dpr13 - chr2R 17982979 intron dpr13 - chr2R 17983031 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-129 399 chr2R 18045667 18045701 chr2R 18046019 18046053 jockey 6 352 1.5 1.5 1.5 2.4 386 chr2R 18045667 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046053 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 RAL-129 400 chr2R 18075982 18075997 chr2R 18076070 18076087 5 87 2.0 3.5 2.8 1.3 105 chr2R 18075982 intron CG34386 + chr2R 18076034 intron CG34386 + chr2R 18076087 intron CG34386 + chr2R_5_18075001 chr2R_18075001 RAL-129 401 chr2R 18111698 18111712 chr2R 18115566 18115580 F-element 4 3868 1.0 4.0 2.5 1.1 3882 chr2R 18111698 intergenic not near genes chr2R 18113639 intergenic not near genes chr2R 18115580 intergenic not near genes chr2R_4_18110001 chr2R_18110001 RAL-129 402 chr2R 18358388 18358413 chr2R 18372600 18372625 roo 6 14212 1.5 2.0 1.8 2.1 14237 chr2R 18358388 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372625 intergenic not near genes chr2R_6_18365001 chr2R_18365001 RAL-129 403 chr2R 18408287 18408313 chr2R 18408408 18408434 6 118 1.0 5.0 3.0 1.5 147 chr2R 18408287 exon GstE8 + chr2R 18408360 exon GstE8 + chr2R 18408434 exon GstE8 + chr2R_6_18405001 chr2R_18405001 RAL-129 404 chr2R 18499441 18499468 chr2R 18499830 18499858 7 380 4.0 3.0 3.5 1.6 417 chr2R 18499441 intergenic not near genes chr2R 18499650 intergenic not near genes chr2R 18499858 intergenic not near genes chr2R_7_18495001 chr2R_18495001 RAL-129 405 chr2R 18528194 18528211 chr2R 18528279 18528296 5 85 2.0 1.5 1.8 1.8 102 chr2R 18528194 intron CG10924 + chr2R 18528245 intron CG10924 + chr2R 18528296 intron CG10924 + chr2R_5_18525001 chr2R_18525001 RAL-129 406 chr2R 18532037 18532067 chr2R 18532125 18532135 7 84 2.5 2.5 2.5 2.0 98 chr2R 18532037 intron CG10924 + chr2R 18532086 intron CG10924 + chr2R 18532135 intron CG10924 + chr2R_7_18530001 chr2R_18530001 RAL-129 407 chr2R 18534913 18534936 chr2R 18535231 18535253 8 316 2.0 2.5 2.2 2.5 340 chr2R 18534913 3` UTR CG10924 + chr2R 18535083 3` UTR CG10924 + chr2R 18535253 3` UTR CG10924 + chr2R_8_18535001 chr2R_18535001 RAL-129 408 chr2R 18590872 18590898 chr2R 18600018 18600050 roo 6 9150 3.0 1.0 2.0 2.0 9178 chr2R 18590872 intron GEFmeso - chr2R 18595461 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-129 409 chr2R 18608639 18608656 chr2R 18608711 18608732 5 74 1.0 1.0 1.0 2.5 93 chr2R 18608639 intron GEFmeso - chr2R 18608686 intron GEFmeso - chr2R 18608732 intron GEFmeso - chr2R_5_18605001 chr2R_18605001 RAL-129 410 chr2R 18732356 18732367 chr2R 18732490 18732501 4 134 2.5 2.0 2.2 1.2 145 chr2R 18732356 intron Hs3st-A + chr2R 18732428 intron Hs3st-A + chr2R 18732501 intron Hs3st-A + chr2R_4_18730001 chr2R_18730001 RAL-129 411 chr2R 18819052 18819068 chr2R 18819123 18819144 4 75 1.0 0.5 0.8 2.2 92 chr2R 18819052 intergenic Phb2 + chr2R 18819098 intergenic Phb2 + chr2R 18819144 intergenic Phb2 + chr2R_4_18815001 chr2R_18815001 RAL-129 412 chr2R 18953157 18953182 chr2R 18953244 18953269 7 87 0.0 2.5 1.2 3.2 112 chr2R 18953157 intron sano + chr2R 18953213 intron sano + chr2R 18953269 intron sano + chr2R_7_18950001 chr2R_18950001 RAL-129 413 chr2R 19076377 19076404 chr2R 19076485 19076504 4 105 1.5 2.0 1.8 1.4 127 chr2R 19076377 intron 5-HT1A + chr2R 19076440 intron 5-HT1A + chr2R 19076504 intron 5-HT1A + chr2R_4_19075001 chr2R_19075001 RAL-129 414 chr2R 19105493 19105525 chr2R 19105579 19105611 6 86 2.5 1.0 1.8 2.1 118 chr2R 19105493 intron 5-HT1A + chr2R 19105552 intron 5-HT1A + chr2R 19105611 intron 5-HT1A + chr2R_6_19105001 chr2R_19105001 RAL-129 415 chr2R 19522651 19522667 chr2R 19522730 19522732 5 76 0.5 2.0 1.2 2.3 81 chr2R 19522651 3` UTR sm - chr2R 19522692 3` UTR sm - chr2R 19522732 3` UTR sm - chr2R_5_19520001 chr2R_19520001 RAL-129 416 chr2R 19542596 19542616 chr2R 19542673 19542689 7 76 2.0 0.0 1.0 3.5 93 chr2R 19542596 intron sm - chr2R 19542642 intron sm - chr2R 19542689 intron sm - chr2R_7_19540001 chr2R_19540001 RAL-129 417 chr2R 19588747 19588774 chr2R 19588825 19588852 6 76 1.0 2.0 1.5 2.4 105 chr2R 19588747 intron sm - chr2R 19588800 intron sm - chr2R 19588852 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-129 418 chr2R 19776596 19776614 chr2R 19779919 19779930 jockey 4 3321 4.0 3.0 3.5 0.9 3334 chr2R 19776596 intergenic not near genes chr2R 19778263 intergenic not near genes chr2R 19779930 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-129 419 chr2R 19776615 19776627 chr2R 19779918 19779949 jockey 4 3318 3.0 3.0 3.0 1.0 3334 chr2R 19776615 intergenic not near genes chr2R 19778282 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-129 420 chr2R 19914850 19914869 chr2R 19922262 19922281 mdg1 5 7412 2.0 1.5 1.8 1.8 7431 chr2R 19914850 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922281 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-129 421 chr2R 19957434 19957462 chr2R 19962633 19962634 copia 5 5194 1.0 2.0 1.5 2.0 5200 chr2R 19957434 intergenic CG44623 + chr2R 19960034 intergenic not near genes chr2R 19962634 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-129 422 chr2R 20080604 20080623 chr2R 20080679 20080700 4 76 0.0 2.0 1.0 2.0 96 chr2R 20080604 intergenic not near genes chr2R 20080652 intergenic not near genes chr2R 20080700 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-129 423 chr2R 20162686 20162699 chr2R 20162803 20162816 4 116 4.0 0.5 2.2 1.2 130 chr2R 20162686 intergenic not near genes chr2R 20162751 intergenic not near genes chr2R 20162816 intergenic not near genes chr2R_4_20160001 chr2R_20160001 RAL-129 424 chr2R 20223955 20223966 chr2R 20224040 20224051 5 84 3.5 0.0 1.8 1.8 96 chr2R 20223955 intergenic not near genes chr2R 20224003 intergenic not near genes chr2R 20224051 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-129 425 chr2R 20320721 20320739 chr2R 20320796 20320815 6 73 1.5 2.0 1.8 2.1 94 chr2R 20320721 intron CG8920 + chr2R 20320768 intron CG8920 + chr2R 20320815 intron CG8920 + chr2R_6_20320001 chr2R_20320001 RAL-129 426 chr2R 20523045 20523069 chr2R 20523149 20523180 6 108 0.5 1.0 0.8 3.3 135 chr2R 20523045 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523180 intergenic not near genes chr2R_6_20520001 chr2R_20520001 RAL-129 427 chr2R 20541987 20542014 chr2R 20542064 20542092 8 78 2.0 0.5 1.2 3.6 105 chr2R 20541987 intergenic not near genes chr2R 20542040 intergenic not near genes chr2R 20542092 intergenic not near genes chr2R_8_20540001 chr2R_20540001 RAL-129 428 chr2R 20572571 20572581 chr2R 20572661 20572671 4 89 0.5 0.5 0.5 2.7 100 chr2R 20572571 intron qsm - chr2R 20572621 intron qsm - chr2R 20572671 intron qsm - chr2R_4_20570001 chr2R_20570001 RAL-129 429 chr2R 20601726 20601754 chr2R 20601810 20601839 5 85 0.0 2.5 1.2 2.3 113 chr2R 20601726 intron bl + chr2R 20601782 intron bl + chr2R 20601839 intron bl + chr2R_5_20600001 chr2R_20600001 RAL-129 430 chr2R 20848930 20848962 chr2R 20849016 20849048 10 85 1.5 3.5 2.5 2.9 118 chr2R 20848930 exon CG17999 - chr2R 20848989 intron CG17999 - chr2R 20849048 intron CG17999 - chr2R_10_20845001 chr2R_20845001 RAL-129 431 chr2R 20869412 20869427 chr2R 20869499 20869511 6 87 4.5 3.0 3.8 1.2 99 chr2R 20869412 intergenic IM4 - chr2R 20869462 intergenic IM4 - chr2R 20869511 intergenic IM4 - chr2R_6_20865001 chr2R_20865001 RAL-129 432 chr2R 20889543 20889571 chr2R 20889681 20889709 7 135 1.0 1.5 1.2 3.2 166 chr2R 20889543 intron otp - chr2R 20889626 intron otp - chr2R 20889709 intron otp - chr2R_7_20885001 chr2R_20885001 RAL-129 433 chr2R 20962926 20962939 chr2R 20963020 20963037 4 97 1.5 3.0 2.2 1.2 111 chr2R 20962926 intergenic not near genes chr2R 20962982 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_4_20960001 chr2R_20960001 RAL-129 434 chr2R 21505778 21505794 chr2R 21505859 21505874 5 80 2.0 4.0 3.0 1.2 96 chr2R 21505778 intron MESK2 + chr2R 21505826 intron MESK2 + chr2R 21505874 intron MESK2 + chr2R_5_21505001 chr2R_21505001 RAL-129 435 chr2R 21660125 21660149 chr2R 21660201 21660225 4 76 2.0 1.0 1.5 1.6 100 chr2R 21660125 intergenic Rae1 - chr2R 21660175 intergenic Rae1 - chr2R 21660225 intergenic Rae1 - chr2R_4_21660001 chr2R_21660001 RAL-129 436 chr2R 21710940 21710965 chr2R 21711037 21711061 8 97 1.0 2.0 1.5 3.2 121 chr2R 21710940 intron,intron HmgD +,CG30403 - chr2R 21711000 intron,intron HmgD +,CG30403 - chr2R 21711061 intron,intron HmgD +,CG30403 - chr2R_8_21710001 chr2R_21710001 RAL-129 437 chr2R 21759565 21759576 chr2R 21759650 21759661 5 85 3.5 1.5 2.5 1.4 96 chr2R 21759565 intergenic not near genes chr2R 21759613 intergenic not near genes chr2R 21759661 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-129 438 chr2R 21818876 21818911 chr2R 21818963 21818998 8 86 1.5 0.0 0.8 4.4 122 chr2R 21818876 intergenic not near genes chr2R 21818937 intergenic not near genes chr2R 21818998 intergenic not near genes chr2R_8_21815001 chr2R_21815001 RAL-129 439 chr2R 21832425 21832453 chr2R 21832831 21832840 6 400 1.0 2.5 1.8 2.1 415 chr2R 21832425 intergenic CG34040 - chr2R 21832632 exon CG34040 - chr2R 21832840 exon CG34040 - chr2R_6_21830001 chr2R_21830001 RAL-129 440 chr2R 21906287 21906303 chr2R 21906388 21906404 6 100 1.0 4.5 2.8 1.6 117 chr2R 21906287 intron Fili + chr2R 21906346 intron Fili + chr2R 21906404 intron Fili + chr2R_6_21905001 chr2R_21905001 RAL-129 441 chr2R 22003094 22003104 chr2R 22003179 22003189 4 85 3.0 1.0 2.0 1.3 95 chr2R 22003094 intron CG34370 - chr2R 22003142 intron CG34370 - chr2R 22003189 intron CG34370 - chr2R_4_22000001 chr2R_22000001 RAL-129 442 chr2R 22037785 22037803 chr2R 22037867 22037885 5 82 1.0 1.0 1.0 2.5 100 chr2R 22037785 intron CG34370 - chr2R 22037835 intron CG34370 - chr2R 22037885 intron CG34370 - chr2R_5_22035001 chr2R_22035001 RAL-129 443 chr2R 22185688 22185691 chr2R 22185787 22185790 4 98 2.0 0.5 1.2 1.8 102 chr2R 22185688 3` UTR MED16 + chr2R 22185739 3` UTR MED16 + chr2R 22185790 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-129 444 chr2R 22248842 22248874 chr2R 22248919 22248944 8 76 1.0 4.5 2.8 2.1 102 chr2R 22248842 intron dve + chr2R 22248893 intron dve + chr2R 22248944 intron dve + chr2R_8_22245001 chr2R_22245001 RAL-129 445 chr2R 22525751 22525781 chr2R 22529306 22529336 jockey 8 3555 1.5 1.5 1.5 3.2 3585 chr2R 22525751 intron px - chr2R 22527544 intron px - chr2R 22529336 intron px - chr2R_8_22525001 chr2R_22525001 RAL-129 446 chr2R 22577092 22577113 chr2R 22577172 22577192 4 80 3.5 0.0 1.8 1.4 100 chr2R 22577092 intron dnr1 - chr2R 22577142 intron dnr1 - chr2R 22577192 intron dnr1 - chr2R_4_22575001 chr2R_22575001 RAL-129 447 chr2R 22664682 22664713 chr2R 22664761 22664791 7 79 0.5 0.5 0.5 4.7 109 chr2R 22664682 intergenic CG4250 + chr2R 22664736 intergenic CG4250 + chr2R 22664791 intergenic CG4250 + chr2R_7_22660001 chr2R_22660001 RAL-129 448 chr2R 22723231 22723263 chr2R 22723307 22723339 4 76 3.0 1.5 2.2 1.2 108 chr2R 22723231 intron jbug - chr2R 22723285 intron jbug - chr2R 22723339 intron jbug - chr2R_4_22720001 chr2R_22720001 RAL-129 449 chr2R 22774962 22774991 chr2R 22775379 22775407 jockey 9 418 2.0 0.5 1.2 4.1 445 chr2R 22774962 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775407 intron CG42260 - chr2R_9_22775001 chr2R_22775001 RAL-129 450 chr2R 22993431 22993448 chr2R 22993605 22993621 4 174 0.0 4.5 2.2 1.2 190 chr2R 22993431 intron twi + chr2R 22993526 intron twi + chr2R 22993621 intron twi + chr2R_4_22990001 chr2R_22990001 RAL-129 451 chr2R 23045825 23045845 chr2R 23045910 23045921 5 83 0.0 1.0 0.5 3.3 96 chr2R 23045825 intron twi + chr2R 23045873 intron twi + chr2R 23045921 intron twi + chr2R_5_23045001 chr2R_23045001 RAL-129 452 chr2R 23070410 23070444 chr2R 23070502 23070537 6 94 2.5 4.5 3.5 1.3 127 chr2R 23070410 intron l(2)k09913 + chr2R 23070474 intron l(2)k09913 + chr2R 23070537 intron l(2)k09913 + chr2R_6_23070001 chr2R_23070001 RAL-129 453 chr2R 23186707 23186732 chr2R 23186797 23186822 5 90 1.0 1.5 1.2 2.3 115 chr2R 23186707 intron CG34371 - chr2R 23186764 intron CG34371 - chr2R 23186822 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-129 454 chr2R 23190017 23190043 chr2R 23190097 23190123 8 78 1.5 0.0 0.8 4.4 106 chr2R 23190017 intron CG34371 - chr2R 23190070 intron CG34371 - chr2R 23190123 intron CG34371 - chr2R_8_23190001 chr2R_23190001 RAL-129 455 chr2R 23194204 23194226 chr2R 23194279 23194308 4 79 0.0 1.0 0.5 2.7 104 chr2R 23194204 intron CG34371 - chr2R 23194256 intron CG34371 - chr2R 23194308 intron CG34371 - chr2R_4_23190001 chr2R_23190001 RAL-129 456 chr2R 23356283 23356305 chr2R 23356372 23356390 9 87 2.5 1.0 1.8 3.2 107 chr2R 23356283 3` UTR Rpi + chr2R 23356336 3` UTR Rpi + chr2R 23356390 3` UTR,3` UTR Rpi +,CG3500 - chr2R_9_23355001 chr2R_23355001 RAL-129 457 chr2R 23394330 23394355 chr2R 23394410 23394435 8 81 1.5 1.0 1.2 3.6 105 chr2R 23394330 intron CG3530 - chr2R 23394382 intron CG3530 - chr2R 23394435 intron CG3530 - chr2R_8_23390001 chr2R_23390001 RAL-129 458 chr2R 23402612 23402638 chr2R 23407688 23407714 flea 6 5076 1.0 2.5 1.8 2.1 5102 chr2R 23402612 intergenic CG3520 - chr2R 23405163 intergenic not near genes chr2R 23407714 intergenic not near genes chr2R_6_23405001 chr2R_23405001 RAL-129 459 chr2R 23483670 23483684 chr2R 23483943 23483968 4 281 1.0 1.5 1.2 1.8 298 chr2R 23483670 intron CG43795 + chr2R 23483819 intron CG43795 + chr2R 23483968 intron CG43795 + chr2R_4_23480001 chr2R_23480001 RAL-129 460 chr2R 23726225 23726258 chr2R 23726314 23726318 4 80 3.5 4.5 4.0 0.8 93 chr2R 23726225 intron Sesn + chr2R 23726272 intron Sesn + chr2R 23726318 intron Sesn + chr2R_4_23725001 chr2R_23725001 RAL-129 461 chr2R 23744791 23744794 chr2R 23744863 23744871 4 77 1.5 6.0 3.8 0.8 80 chr2R 23744791 intron egl - chr2R 23744831 intron egl - chr2R 23744871 intron egl - chr2R_4_23740001 chr2R_23740001 RAL-129 462 chr2R 23784470 23784494 chr2R 23784548 23784555 4 70 3.0 2.0 2.5 1.1 85 chr2R 23784470 intron CG9850 - chr2R 23784512 intron CG9850 - chr2R 23784555 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-129 463 chr2R 23817216 23817239 chr2R 23817436 23817460 5 220 1.0 1.5 1.2 2.3 244 chr2R 23817216 intron CG4797 - chr2R 23817338 intron CG4797 - chr2R 23817460 intron CG4797 - chr2R_5_23815001 chr2R_23815001 RAL-129 464 chr2R 23926830 23926858 chr2R 23926912 23926919 6 78 1.5 2.5 2.0 2.0 89 chr2R 23926830 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926874 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926919 3` UTR Ca-P60A - chr2R_6_23925001 chr2R_23925001 RAL-129 465 chr2R 23986516 23986548 chr2R 23986594 23986628 4 79 1.0 2.0 1.5 1.6 112 chr2R 23986516 intron Phm - chr2R 23986572 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_4_23985001 chr2R_23985001 RAL-129 466 chr2R 24031391 24031400 chr2R 24031475 24031483 4 84 3.0 3.0 3.0 1.0 92 chr2R 24031391 5` UTR CG30172 - chr2R 24031437 intergenic CG30172 -,Chi - chr2R 24031483 intergenic Chi -,CG30172 - chr2R_4_24030001 chr2R_24030001 RAL-129 467 chr2R 24147071 24147094 chr2R 24154649 24154672 412 4 7578 2.0 6.0 4.0 0.8 7601 chr2R 24147071 intron Dat + chr2R 24150872 intron Dat + chr2R 24154672 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-129 468 chr2R 24177240 24177260 chr2R 24184725 24184744 412 5 7484 1.5 1.0 1.2 2.3 7504 chr2R 24177240 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184744 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-129 469 chr2R 24278335 24278359 chr2R 24278403 24278437 5 74 0.5 4.0 2.2 1.6 102 chr2R 24278335 intron nvy + chr2R 24278386 intron nvy + chr2R 24278437 intron nvy + chr2R_5_24275001 chr2R_24275001 RAL-129 470 chr2R 24303908 24303919 chr2R 24303971 24304003 5 80 2.0 0.5 1.2 2.3 95 chr2R 24303908 intergenic not near genes chr2R 24303956 intergenic not near genes chr2R 24304003 intergenic not near genes chr2R_5_24300001 chr2R_24300001 RAL-129 471 chr2R 24351421 24351439 chr2R 24351502 24351520 5 81 1.5 4.0 2.8 1.3 99 chr2R 24351421 intron bs + chr2R 24351470 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_5_24350001 chr2R_24350001 RAL-129 472 chr2R 24353429 24353458 chr2R 24361788 24361820 roo 7 8361 0.5 4.0 2.2 2.2 8391 chr2R 24353429 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361820 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-129 473 chr2R 24372813 24372840 chr2R 24373041 24373052 8 224 1.0 1.0 1.0 4.0 239 chr2R 24372813 intron bs + chr2R 24372932 intron bs + chr2R 24373052 intron bs + chr2R_8_24370001 chr2R_24370001 RAL-129 474 chr2R 24383829 24383852 chr2R 24383910 24383933 6 81 0.0 1.0 0.5 4.0 104 chr2R 24383829 intron mAChR-A - chr2R 24383881 intron mAChR-A - chr2R 24383933 exon mAChR-A - chr2R_6_24380001 chr2R_24380001 RAL-129 475 chr2R 24592963 24592977 chr2R 24593038 24593070 5 88 1.5 3.0 2.2 1.6 107 chr2R 24592963 intron pio + chr2R 24593016 intron pio + chr2R 24593070 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-129 476 chr2R 24687635 24687665 chr2R 24687720 24687735 6 80 1.0 1.0 1.0 3.0 100 chr2R 24687635 intergenic Mmp1 - chr2R 24687685 intergenic Mmp1 - chr2R 24687735 intergenic Mmp1 - chr2R_6_24685001 chr2R_24685001 RAL-129 477 chr2R 24718457 24718489 chr2R 24718539 24718553 7 79 4.5 0.5 2.5 2.0 96 chr2R 24718457 intron Mid1 - chr2R 24718505 intron Mid1 - chr2R 24718553 intron Mid1 - chr2R_7_24715001 chr2R_24715001 RAL-129 478 chr2R 24747254 24747270 chr2R 24747333 24747350 4 80 2.0 6.0 4.0 0.8 96 chr2R 24747254 intron CG30421 + chr2R 24747302 intron CG30421 + chr2R 24747350 intron CG30421 + chr2R_4_24745001 chr2R_24745001 RAL-129 479 chr2R 24763619 24763639 chr2R 24765592 24765592 G2 5 1967 2.0 3.5 2.8 1.3 1973 chr2R 24763619 exon CG3894 + chr2R 24764606 intron CG3894 + chr2R 24765592 exon CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-129 480 chr2R 25060907 25060927 chr2R 25060997 25061017 9 89 1.5 0.0 0.8 5.0 110 chr2R 25060907 intergenic not near genes chr2R 25060962 intergenic not near genes chr2R 25061017 intergenic not near genes chr2R_9_25060001 chr2R_25060001 RAL-129 481 chr2R 25104778 25104803 chr2R 25104903 25104928 4 125 0.0 1.5 0.8 2.2 150 chr2R 25104778 intron lov - chr2R 25104853 intron lov - chr2R 25104928 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-129 482 chr3L 68979 69007 chr3L 69066 69094 6 87 1.5 3.0 2.2 1.9 115 chr3L 68979 3` UTR Lsp1gamma + chr3L 69036 intergenic Lsp1gamma +,CR44510 + chr3L 69094 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-129 483 chr3L 110210 110244 chr3L 119377 119411 roo 5 9167 2.0 2.5 2.2 1.6 9201 chr3L 110210 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-129 484 chr3L 165682 165695 chr3L 165820 165832 4 137 4.5 1.5 3.0 1.0 150 chr3L 165682 intron p130CAS + chr3L 165757 intron p130CAS + chr3L 165832 intron p130CAS + chr3L_4_165001 chr3L_165001 RAL-129 485 chr3L 563975 563996 chr3L 564151 564168 6 176 3.5 3.0 3.2 1.4 193 chr3L 563975 intron hipk + chr3L 564072 intron hipk + chr3L 564168 intron hipk + chr3L_6_560001 chr3L_560001 RAL-129 486 chr3L 821077 821085 chr3L 821155 821163 5 78 2.5 2.0 2.2 1.6 86 chr3L 821077 5` UTR CR43883 + chr3L 821120 5` UTR CR43883 + chr3L 821163 5` UTR CR43883 + chr3L_5_820001 chr3L_820001 RAL-129 487 chr3L 875657 875692 chr3L 875744 875777 8 86 1.5 1.5 1.5 3.2 120 chr3L 875657 intron CG32479 + chr3L 875717 intron CG32479 + chr3L 875777 intron CG32479 + chr3L_8_875001 chr3L_875001 RAL-129 488 chr3L 918431 918463 chr3L 918516 918548 4 85 1.5 0.5 1.0 2.0 117 chr3L 918431 intron Glut1 + chr3L 918490 intron Glut1 + chr3L 918548 intron Glut1 + chr3L_4_915001 chr3L_915001 RAL-129 489 chr3L 933909 933943 chr3L 934012 934045 7 103 1.0 0.0 0.5 4.7 136 chr3L 933909 intron Glut1 + chr3L 933977 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-129 490 chr3L 939777 939800 chr3L 940897 940920 jockey 6 1119 2.5 3.5 3.0 1.5 1143 chr3L 939777 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-129 491 chr3L 1011006 1011022 chr3L 1011087 1011103 4 80 1.0 3.5 2.2 1.2 97 chr3L 1011006 intron trio - chr3L 1011054 intron trio - chr3L 1011103 intron trio - chr3L_4_1010001 chr3L_1010001 RAL-129 492 chr3L 1040550 1040562 chr3L 1040634 1040646 4 84 2.5 1.0 1.8 1.4 96 chr3L 1040550 intron bab1 - chr3L 1040598 intron bab1 - chr3L 1040646 intron bab1 - chr3L_4_1040001 chr3L_1040001 RAL-129 493 chr3L 1154130 1154156 chr3L 1163278 1163306 roo 9 9149 3.0 1.0 2.0 3.0 9176 chr3L 1154130 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163306 intron bab2 - chr3L_9_1155001 chr3L_1155001 RAL-129 494 chr3L 1219595 1219623 chr3L 1227327 1227327 412 6 7725 3.5 3.5 3.5 1.3 7732 chr3L 1219595 intron mwh + chr3L 1223461 intron mwh + chr3L 1227327 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-129 495 chr3L 1228245 1228269 chr3L 1228327 1228351 5 82 1.5 1.0 1.2 2.3 106 chr3L 1228245 intron mwh + chr3L 1228298 intron mwh + chr3L 1228351 intron mwh + chr3L_5_1225001 chr3L_1225001 RAL-129 496 chr3L 1310981 1310996 chr3L 1315845 1315871 9 4863 19.0 13.0 16.0 0.5 4890 chr3L 1310981 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315871 exon CG9153 + chr3L_9_1310001 chr3L_1310001 RAL-129 497 chr3L 1347170 1347190 chr3L 1347245 1347247 8 70 1.0 4.0 2.5 2.3 77 chr3L 1347170 intron Ptp61F - chr3L 1347208 intron Ptp61F - chr3L 1347247 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-129 498 chr3L 1415792 1415803 chr3L 1415865 1415870 5 77 3.0 4.0 3.5 1.1 78 chr3L 1415792 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415870 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-129 499 chr3L 1670417 1670438 chr3L 1681736 1681757 10 11319 10.5 5.5 8.0 1.1 11340 chr3L 1670417 3` UTR CG13930 - chr3L 1676087 intron CG7991 + chr3L 1681757 intron CG7991 + chr3L_10_1675001 chr3L_1675001 RAL-129 500 chr3L 1814377 1814401 chr3L 1814552 1814576 4 175 2.5 1.5 2.0 1.3 199 chr3L 1814377 intron GV1 + chr3L 1814476 intron GV1 + chr3L 1814576 intron GV1 + chr3L_4_1810001 chr3L_1810001 RAL-129 501 chr3L 1988108 1988122 chr3L 1988248 1988259 6 138 0.5 1.0 0.8 3.3 151 chr3L 1988108 intergenic not near genes chr3L 1988184 intergenic not near genes chr3L 1988259 intergenic not near genes chr3L_6_1985001 chr3L_1985001 RAL-129 502 chr3L 2016832 2016854 chr3L 2016918 2016940 4 86 3.0 1.0 2.0 1.3 108 chr3L 2016832 intergenic not near genes chr3L 2016886 intergenic not near genes chr3L 2016940 intergenic not near genes chr3L_4_2015001 chr3L_2015001 RAL-129 503 chr3L 2168775 2168808 chr3L 2168865 2168896 7 85 1.5 1.5 1.5 2.8 121 chr3L 2168775 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168896 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-129 504 chr3L 2301942 2301960 chr3L 2302022 2302040 4 80 1.5 0.5 1.0 2.0 98 chr3L 2301942 intergenic not near genes chr3L 2301991 intergenic not near genes chr3L 2302040 intergenic not near genes chr3L_4_2300001 chr3L_2300001 RAL-129 505 chr3L 2308005 2308019 chr3L 2308111 2308125 4 104 3.0 3.0 3.0 1.0 120 chr3L 2308005 intergenic not near genes chr3L 2308065 intergenic not near genes chr3L 2308125 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-129 506 chr3L 2331584 2331613 chr3L 2331661 2331678 5 74 2.0 1.0 1.5 2.0 94 chr3L 2331584 intron MsR1 + chr3L 2331631 intron MsR1 + chr3L 2331678 intron MsR1 + chr3L_5_2330001 chr3L_2330001 RAL-129 507 chr3L 2447504 2447538 chr3L 2456659 2456694 roo 4 9148 1.0 4.0 2.5 1.1 9190 chr3L 2447504 intron CG45186 + chr3L 2452099 intron CG45186 + chr3L 2456694 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-129 508 chr3L 2800086 2800111 chr3L 2800178 2800202 9 90 2.0 1.0 1.5 3.6 116 chr3L 2800086 intron CG43444 - chr3L 2800144 intron CG43444 - chr3L 2800202 intron CG43444 - chr3L_9_2800001 chr3L_2800001 RAL-129 509 chr3L 2927841 2927864 chr3L 2936117 2936141 Tirant 5 8276 1.5 1.0 1.2 2.3 8300 chr3L 2927841 intron Shab + chr3L 2931991 intron Shab + chr3L 2936141 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-129 510 chr3L 3045282 3045299 chr3L 3045436 3045453 7 153 2.5 0.5 1.5 2.8 171 chr3L 3045282 intron scramb2 - chr3L 3045368 intron scramb2 - chr3L 3045453 intron scramb2 - chr3L_7_3045001 chr3L_3045001 RAL-129 511 chr3L 3061307 3061317 chr3L 3069866 3069885 Tirant 4 8564 2.0 3.0 2.5 1.1 8578 chr3L 3061307 intron CG32486 - chr3L 3065596 intron CG32486 - chr3L 3069885 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-129 512 chr3L 3102824 3102844 chr3L 3102909 3102929 5 85 1.5 4.5 3.0 1.2 105 chr3L 3102824 intron Cht7 - chr3L 3102876 intron Cht7 - chr3L 3102929 intron Cht7 - chr3L_5_3100001 chr3L_3100001 RAL-129 513 chr3L 3125794 3125808 chr3L 3125874 3125889 4 80 2.0 8.0 5.0 0.7 95 chr3L 3125794 intron prominin-like - chr3L 3125842 intron prominin-like - chr3L 3125889 intron prominin-like - chr3L_4_3125001 chr3L_3125001 RAL-129 514 chr3L 3231764 3231787 chr3L 3231863 3231887 4 100 0.5 2.5 1.5 1.6 123 chr3L 3231764 exon CG11505 + chr3L 3231826 intron CG11505 + chr3L 3231887 intron CG11505 + chr3L_4_3230001 chr3L_3230001 RAL-129 515 chr3L 3281443 3281474 chr3L 3281939 3281969 Doc 11 495 1.0 3.0 2.0 3.7 526 chr3L 3281443 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_11_3280001 chr3L_3280001 RAL-129 516 chr3L 3601297 3601322 chr3L 3606608 3606615 copia 7 5308 2.5 0.0 1.2 3.2 5318 chr3L 3601297 intron Eip63E + chr3L 3603956 intron Eip63E + chr3L 3606615 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-129 517 chr3L 3642159 3642188 chr3L 3642263 3642293 6 105 2.0 1.0 1.5 2.4 134 chr3L 3642159 intron dar1 + chr3L 3642226 intron dar1 + chr3L 3642293 intron dar1 + chr3L_6_3640001 chr3L_3640001 RAL-129 518 chr3L 3756104 3756127 chr3L 3757049 3757073 4 945 3.0 2.5 2.8 1.1 969 chr3L 3756104 intron CG32264 - chr3L 3756588 intron CG32264 - chr3L 3757073 intron CG32264 - chr3L_4_3755001 chr3L_3755001 RAL-129 519 chr3L 3815057 3815083 chr3L 3815138 3815164 4 80 3.5 0.0 1.8 1.4 107 chr3L 3815057 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815164 intron,intron Scsalpha +,CR43932 - chr3L_4_3815001 chr3L_3815001 RAL-129 520 chr3L 4328744 4328765 chr3L 4336235 4336262 412 6 7496 0.5 1.5 1.0 3.0 7518 chr3L 4328744 intron Cip4 - chr3L 4332503 intron Cip4 - chr3L 4336262 intron Cip4 - chr3L_6_4330001 chr3L_4330001 RAL-129 521 chr3L 4341330 4341331 chr3L 21448026 21448026 4 17106695 10.0 7.5 8.8 0.4 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-129 522 chr3L 4347828 4347848 chr3L 4347914 4347921 4 82 1.5 2.5 2.0 1.3 93 chr3L 4347828 intron Cip4 - chr3L 4347874 intron Cip4 - chr3L 4347921 intron Cip4 - chr3L_4_4345001 chr3L_4345001 RAL-129 523 chr3L 4383297 4383304 chr3L 4383388 4383397 4 92 4.0 1.5 2.8 1.1 100 chr3L 4383297 intergenic not near genes chr3L 4383347 intergenic not near genes chr3L 4383397 intergenic not near genes chr3L_4_4380001 chr3L_4380001 RAL-129 524 chr3L 4397438 4397467 chr3L 4397568 4397596 5 128 2.0 1.5 1.8 1.8 158 chr3L 4397438 intron slow + chr3L 4397517 intron slow + chr3L 4397596 intron slow + chr3L_5_4395001 chr3L_4395001 RAL-129 525 chr3L 4630558 4630584 chr3L 4630646 4630672 4 88 2.0 0.5 1.2 1.8 114 chr3L 4630558 intron axo - chr3L 4630615 intron axo - chr3L 4630672 intron axo - chr3L_4_4630001 chr3L_4630001 RAL-129 526 chr3L 4807334 4807369 chr3L 4808935 4808946 4 1584 2.0 14.5 8.2 0.4 1612 chr3L 4807334 5` UTR CG18808 - chr3L 4808140 exon Dhc64C - chr3L 4808946 exon Dhc64C - chr3L_4_4805001 chr3L_4805001 RAL-129 527 chr3L 5130939 5130958 chr3L 5131031 5131061 7 99 2.0 0.5 1.2 3.2 122 chr3L 5130939 intergenic not near genes chr3L 5131000 intergenic not near genes chr3L 5131061 intergenic CG15212 + chr3L_7_5130001 chr3L_5130001 RAL-129 528 chr3L 5299158 5299181 chr3L 5306594 5306617 Quasimodo 4 7436 2.0 2.0 2.0 1.3 7459 chr3L 5299158 intergenic not near genes chr3L 5302888 intergenic not near genes chr3L 5306617 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-129 529 chr3L 5388204 5388225 chr3L 5388527 5388549 7 323 2.0 2.0 2.0 2.3 345 chr3L 5388204 intergenic not near genes chr3L 5388376 intergenic not near genes chr3L 5388549 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-129 530 chr3L 5449533 5449563 chr3L 5449612 5449642 4 79 0.0 1.0 0.5 2.7 109 chr3L 5449533 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449642 intergenic not near genes chr3L_4_5445001 chr3L_5445001 RAL-129 531 chr3L 5537721 5537751 chr3L 5538063 5538092 jockey 5 342 0.0 1.0 0.5 3.3 371 chr3L 5537721 intergenic not near genes chr3L 5537906 intergenic not near genes chr3L 5538092 intergenic CG10625 - chr3L_5_5535001 chr3L_5535001 RAL-129 532 chr3L 6040368 6040392 chr3L 6042723 6042748 Doc 5 2356 1.5 1.5 1.5 2.0 2380 chr3L 6040368 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042748 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-129 533 chr3L 6220916 6220946 chr3L 6230064 6230097 roo 6 9148 2.0 2.5 2.2 1.9 9181 chr3L 6220916 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230097 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-129 534 chr3L 6335016 6335037 chr3L 6335487 6335508 297 4 469 2.0 2.5 2.2 1.2 492 chr3L 6335016 intron CG13300 - chr3L 6335262 intron CG13300 - chr3L 6335508 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-129 535 chr3L 6483863 6483883 chr3L 6483940 6483960 7 76 2.0 0.5 1.2 3.2 97 chr3L 6483863 intron CG42747 + chr3L 6483912 intron CG42747 + chr3L 6483960 intron CG42747 + chr3L_7_6480001 chr3L_6480001 RAL-129 536 chr3L 6562836 6562850 chr3L 6562916 6562930 6 80 2.0 3.0 2.5 1.7 94 chr3L 6562836 intron CG18769 + chr3L 6562883 intron CG18769 + chr3L 6562930 intron CG18769 + chr3L_6_6560001 chr3L_6560001 RAL-129 537 chr3L 6855920 6855952 chr3L 6860703 6860734 Doc 4 4783 2.5 0.5 1.5 1.6 4814 chr3L 6855920 intergenic not near genes chr3L 6858327 intergenic not near genes chr3L 6860734 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-129 538 chr3L 6974509 6974518 chr3L 6974610 6974619 4 100 0.0 4.5 2.2 1.2 110 chr3L 6974509 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974619 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-129 539 chr3L 7023419 7023436 chr3L 7023513 7023528 4 93 0.0 0.0 0.0 4.0 109 chr3L 7023419 intron Mp + chr3L 7023474 intron Mp + chr3L 7023528 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-129 540 chr3L 7033175 7033201 chr3L 7033255 7033281 5 80 2.5 1.0 1.8 1.8 106 chr3L 7033175 intron Mp + chr3L 7033228 intron Mp + chr3L 7033281 intron Mp + chr3L_5_7030001 chr3L_7030001 RAL-129 541 chr3L 7079608 7079618 chr3L 7079685 7079695 4 77 3.5 1.0 2.2 1.2 87 chr3L 7079608 intergenic not near genes chr3L 7079652 intergenic not near genes chr3L 7079695 intergenic not near genes chr3L_4_7075001 chr3L_7075001 RAL-129 542 chr3L 7244945 7244965 chr3L 7245037 7245050 5 90 3.0 3.0 3.0 1.2 105 chr3L 7244945 exon mei-P22 + chr3L 7244998 exon mei-P22 + chr3L 7245050 exon mei-P22 + chr3L_5_7240001 chr3L_7240001 RAL-129 543 chr3L 7371178 7371202 chr3L 7371262 7371286 5 83 1.0 2.0 1.5 2.0 108 chr3L 7371178 intron akirin + chr3L 7371232 intron akirin + chr3L 7371286 intron akirin + chr3L_5_7370001 chr3L_7370001 RAL-129 544 chr3L 7449438 7449456 chr3L 7449518 7449536 4 79 0.0 1.0 0.5 2.7 98 chr3L 7449438 intron CG42458 + chr3L 7449487 intron CG42458 + chr3L 7449536 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-129 545 chr3L 7498764 7498781 chr3L 7503541 7503557 F-element 4 4776 2.5 1.0 1.8 1.4 4793 chr3L 7498764 5` UTR CG8539 - chr3L 7501160 intergenic not near genes chr3L 7503557 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-129 546 chr3L 7521009 7521024 chr3L 7521095 7521107 6 84 1.0 2.5 1.8 2.1 98 chr3L 7521009 intron ltl + chr3L 7521058 intron ltl + chr3L 7521107 intron ltl + chr3L_6_7520001 chr3L_7520001 RAL-129 547 chr3L 7572300 7572309 chr3L 7572367 7572396 5 82 4.0 0.5 2.2 1.6 96 chr3L 7572300 intergenic not near genes chr3L 7572348 intergenic not near genes chr3L 7572396 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-129 548 chr3L 7574214 7574235 chr3L 7574294 7574314 6 74 3.0 1.5 2.2 1.9 100 chr3L 7574214 intergenic not near genes chr3L 7574264 intergenic not near genes chr3L 7574314 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-129 549 chr3L 7576218 7576232 chr3L 7576305 7576318 4 86 3.0 2.5 2.8 1.1 100 chr3L 7576218 intergenic not near genes chr3L 7576268 intergenic not near genes chr3L 7576318 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-129 550 chr3L 7591895 7591914 chr3L 7591972 7591990 5 77 2.0 1.0 1.5 2.0 95 chr3L 7591895 intergenic not near genes chr3L 7591942 intergenic not near genes chr3L 7591990 intergenic not near genes chr3L_5_7590001 chr3L_7590001 RAL-129 551 chr3L 7793714 7793745 chr3L 7800766 7800797 297 7 7052 3.0 2.5 2.8 1.8 7083 chr3L 7793714 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-129 552 chr3L 7876102 7876116 chr3L 7876181 7876193 4 78 0.0 0.0 0.0 4.0 91 chr3L 7876102 intron CG32365 + chr3L 7876148 intron CG32365 + chr3L 7876193 intron CG32365 + chr3L_4_7875001 chr3L_7875001 RAL-129 553 chr3L 7886521 7886533 chr3L 7889036 7889051 Stalker4 4 2517 1.0 0.5 0.8 2.2 2530 chr3L 7886521 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889051 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-129 554 chr3L 8498296 8498322 chr3L 8505763 8505787 blood 4 7466 0.5 1.0 0.8 2.2 7491 chr3L 8498296 intron CG43163 - chr3L 8502042 intron CG43163 - chr3L 8505787 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-129 555 chr3L 8643577 8643608 chr3L 8643653 8643684 7 76 0.0 2.5 1.2 3.2 107 chr3L 8643577 3` UTR Cpr66D + chr3L 8643630 intergenic Cpr66D + chr3L 8643684 intergenic Cpr66D + chr3L_7_8640001 chr3L_8640001 RAL-129 556 chr3L 8847436 8847459 chr3L 8847533 8847557 5 97 1.5 2.5 2.0 1.7 121 chr3L 8847436 intron dally + chr3L 8847496 intron dally + chr3L 8847557 intron dally + chr3L_5_8845001 chr3L_8845001 RAL-129 557 chr3L 8854645 8854661 chr3L 8854731 8854746 8 85 1.0 2.5 1.8 2.9 101 chr3L 8854645 intron dally + chr3L 8854696 intron dally + chr3L 8854746 intron dally + chr3L_8_8850001 chr3L_8850001 RAL-129 558 chr3L 8861522 8861553 chr3L 8861613 8861644 4 91 0.5 0.5 0.5 2.7 122 chr3L 8861522 intron dally + chr3L 8861583 intron dally + chr3L 8861644 intron dally + chr3L_4_8860001 chr3L_8860001 RAL-129 559 chr3L 9003948 9003976 chr3L 9004033 9004061 6 84 1.0 3.0 2.0 2.0 113 chr3L 9003948 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004061 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-129 560 chr3L 9008645 9008674 chr3L 9008728 9008737 14 80 1.0 2.0 1.5 5.6 92 chr3L 9008645 3` UTR CG5194 - chr3L 9008691 3` UTR CG5194 - chr3L 9008737 3` UTR CG5194 - chr3L_14_9005001 chr3L_9005001 RAL-129 561 chr3L 9010653 9010684 chr3L 9010728 9010760 6 75 1.0 3.0 2.0 2.0 107 chr3L 9010653 intergenic not near genes chr3L 9010706 intergenic not near genes chr3L 9010760 intergenic not near genes chr3L_6_9010001 chr3L_9010001 RAL-129 562 chr3L 9013691 9013692 chr3L 18417066 18417066 5 9403375 13.0 13.0 13.0 0.4 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-129 563 chr3L 9076928 9076959 chr3L 9084488 9084512 412 6 7558 1.5 5.5 3.5 1.3 7584 chr3L 9076928 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084512 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-129 564 chr3L 9121844 9121869 chr3L 9121921 9121946 6 77 3.5 0.0 1.8 2.1 102 chr3L 9121844 intron bol - chr3L 9121895 intron bol - chr3L 9121946 intron bol - chr3L_6_9120001 chr3L_9120001 RAL-129 565 chr3L 9130566 9130575 chr3L 9134317 9134336 412 4 3758 3.5 2.5 3.0 1.0 3770 chr3L 9130566 intergenic bol - chr3L 9132451 intergenic not near genes chr3L 9134336 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-129 566 chr3L 9219249 9219265 chr3L 9219917 9219937 jockey 5 671 5.0 2.0 3.5 1.1 688 chr3L 9219249 intergenic not near genes chr3L 9219593 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-129 567 chr3L 9270635 9270651 chr3L 9278383 9278402 roo 5 7750 2.0 1.5 1.8 1.8 7767 chr3L 9270635 intron GluRIB + chr3L 9274518 intron GluRIB + chr3L 9278402 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-129 568 chr3L 9307796 9307796 chr3L 22908066 22908066 4 13600270 7.5 8.0 7.8 0.5 13600270 chr3L 9307796 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_4_16105001 chr3L_16105001 RAL-129 569 chr3L 9359587 9359620 chr3L 9359678 9359708 4 90 2.0 0.5 1.2 1.8 121 chr3L 9359587 3` UTR CG32039 + chr3L 9359648 3` UTR CG32039 + chr3L 9359708 3` UTR CG32039 + chr3L_4_9355001 chr3L_9355001 RAL-129 570 chr3L 9443519 9443541 chr3L 9445300 9445328 S-element 5 1784 2.0 2.0 2.0 1.7 1809 chr3L 9443519 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445328 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-129 571 chr3L 9516566 9516588 chr3L 9516646 9516669 4 80 1.5 2.0 1.8 1.4 103 chr3L 9516566 intron CG33700 - chr3L 9516618 intron CG33700 - chr3L 9516669 intron CG33700 - chr3L_4_9515001 chr3L_9515001 RAL-129 572 chr3L 9629749 9629763 chr3L 9629825 9629831 4 74 0.5 1.5 1.0 2.0 82 chr3L 9629749 intron CG8336 + chr3L 9629790 intron CG8336 + chr3L 9629831 intron CG8336 + chr3L_4_9625001 chr3L_9625001 RAL-129 573 chr3L 9639288 9639312 chr3L 9639579 9639587 5 286 3.0 3.5 3.2 1.2 299 chr3L 9639288 intron,5` UTR fry -,CG18179 + chr3L 9639438 intron,exon fry -,CG18179 + chr3L 9639587 intron,exon fry -,CG18179 + chr3L_5_9635001 chr3L_9635001 RAL-129 574 chr3L 9715779 9715803 chr3L 9719924 9719934 5 4139 14.5 16.0 15.2 0.3 4155 chr3L 9715779 exon vsg + chr3L 9717856 3` UTR CG18178 - chr3L 9719934 exon CG14174 + chr3L_5_9715001 chr3L_9715001 RAL-129 575 chr3L 9740177 9740198 chr3L 9740379 9740382 7 195 0.5 0.5 0.5 4.7 205 chr3L 9740177 intron CG42268 - chr3L 9740280 intron CG42268 - chr3L 9740382 intron CG42268 - chr3L_7_9740001 chr3L_9740001 RAL-129 576 chr3L 10003160 10003179 chr3L 10003257 10003276 4 97 1.5 2.5 2.0 1.3 116 chr3L 10003160 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-129 577 chr3L 10042364 10042395 chr3L 10042477 10042507 4 112 1.5 0.5 1.0 2.0 143 chr3L 10042364 intron dpr6 + chr3L 10042436 intron dpr6 + chr3L 10042507 intron dpr6 + chr3L_4_10040001 chr3L_10040001 RAL-129 578 chr3L 10115424 10115451 chr3L 10115605 10115629 9 180 2.5 1.5 2.0 3.0 205 chr3L 10115424 intron dpr6 + chr3L 10115526 intron dpr6 + chr3L 10115629 intron dpr6 + chr3L_9_10115001 chr3L_10115001 RAL-129 579 chr3L 10182249 10182283 chr3L 10182336 10182370 13 84 0.5 3.5 2.0 4.3 121 chr3L 10182249 exon dpr10 - chr3L 10182310 5` UTR dpr10 - chr3L 10182370 5` UTR dpr10 - chr3L_13_10180001 chr3L_10180001 RAL-129 580 chr3L 10223780 10223798 chr3L 10223863 10223882 4 84 2.5 1.5 2.0 1.3 102 chr3L 10223780 intron scramb1 - chr3L 10223831 intron scramb1 - chr3L 10223882 exon scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-129 581 chr3L 10298675 10298701 chr3L 10298762 10298788 8 87 1.0 0.5 0.8 4.4 113 chr3L 10298675 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_8_10295001 chr3L_10295001 RAL-129 582 chr3L 10300061 10300072 chr3L 10300148 10300164 5 91 2.0 1.0 1.5 2.0 103 chr3L 10300061 intergenic not near genes chr3L 10300112 intergenic not near genes chr3L 10300164 intergenic not near genes chr3L_5_10300001 chr3L_10300001 RAL-129 583 chr3L 10417571 10417596 chr3L 10417648 10417671 7 76 5.0 3.0 4.0 1.4 100 chr3L 10417571 intergenic not near genes chr3L 10417621 intergenic not near genes chr3L 10417671 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-129 584 chr3L 10658093 10658211 chr3L 10658170 10658338 9 116 0.0 0.0 0.0 9.0 245 chr3L 10658093 intron CG32066 - chr3L 10658216 intron CG32066 - chr3L 10658338 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-129 585 chr3L 11135529 11135804 chr3L 11135759 11135889 5 112 0.5 0.0 0.2 4.2 360 chr3L 11135529 intergenic CG14143 + chr3L 11135709 intergenic CG14143 +,CG32082 + chr3L 11135889 intergenic CG32082 +,CG14143 + chr3L_5_11135001 chr3L_11135001 RAL-129 586 chr3L 11187710 11187740 chr3L 11187791 11187821 5 81 0.0 2.0 1.0 2.5 111 chr3L 11187710 intron GlcAT-P - chr3L 11187766 intron GlcAT-P - chr3L 11187821 intron GlcAT-P - chr3L_5_11185001 chr3L_11185001 RAL-129 587 chr3L 11279748 11279756 chr3L 11279798 11279825 4 56 2.0 0.0 1.0 2.0 77 chr3L 11279748 intergenic not near genes chr3L 11279786 intergenic not near genes chr3L 11279825 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-129 588 chr3L 11300562 11300587 chr3L 11300639 11300668 6 81 0.5 2.5 1.5 2.4 106 chr3L 11300562 intergenic not near genes chr3L 11300615 intergenic not near genes chr3L 11300668 intergenic not near genes chr3L_6_11300001 chr3L_11300001 RAL-129 589 chr3L 11385600 11385627 chr3L 11385845 11385870 4 244 2.0 2.5 2.2 1.2 270 chr3L 11385600 intergenic not near genes chr3L 11385735 intergenic not near genes chr3L 11385870 intergenic not near genes chr3L_4_11385001 chr3L_11385001 RAL-129 590 chr3L 11474624 11474654 chr3L 11474712 11474737 7 88 0.0 0.0 0.0 7.0 113 chr3L 11474624 intergenic Vha16-2 + chr3L 11474680 intergenic Vha16-2 + chr3L 11474737 intergenic Vha16-2 + chr3L_7_11470001 chr3L_11470001 RAL-129 591 chr3L 11579565 11579579 chr3L 11579671 11579684 4 106 0.5 2.0 1.2 1.8 119 chr3L 11579565 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579684 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-129 592 chr3L 11588742 11588759 chr3L 11588898 11588914 6 156 1.5 2.5 2.0 2.0 172 chr3L 11588742 intergenic not near genes chr3L 11588828 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_6_11585001 chr3L_11585001 RAL-129 593 chr3L 11642828 11642849 chr3L 11642904 11642926 7 76 0.5 0.5 0.5 4.7 98 chr3L 11642828 3` UTR CG32091 + chr3L 11642877 3` UTR CG32091 + chr3L 11642926 3` UTR CG6071 - chr3L_7_11640001 chr3L_11640001 RAL-129 594 chr3L 11678097 11678117 chr3L 11678184 11678204 5 87 1.5 1.5 1.5 2.0 107 chr3L 11678097 intron CG32085 - chr3L 11678150 intron CG32085 - chr3L 11678204 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-129 595 chr3L 11723086 11723104 chr3L 11727881 11727897 Doc 5 4794 1.0 0.5 0.8 2.8 4811 chr3L 11723086 3` UTR Bmcp + chr3L 11725492 intron Bmcp + chr3L 11727897 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-129 596 chr3L 11826475 11826506 chr3L 11826667 11826671 11 187 3.0 0.5 1.8 3.9 196 chr3L 11826475 intergenic CycA - chr3L 11826573 intergenic CycA - chr3L 11826671 intergenic CycA - chr3L_11_11825001 chr3L_11825001 RAL-129 597 chr3L 11938869 11938890 chr3L 11938957 11938962 7 84 3.0 2.0 2.5 2.0 93 chr3L 11938869 5` UTR CG44837 - chr3L 11938916 intergenic CG44837 - chr3L 11938962 intergenic CG44837 - chr3L_7_11935001 chr3L_11935001 RAL-129 598 chr3L 12039640 12039653 chr3L 12039730 12039743 4 90 1.5 0.5 1.0 2.0 103 chr3L 12039640 intron rols - chr3L 12039692 intron rols - chr3L 12039743 intron rols - chr3L_4_12035001 chr3L_12035001 RAL-129 599 chr3L 12052705 12052737 chr3L 12052794 12052826 6 86 2.0 0.0 1.0 3.0 121 chr3L 12052705 intron rols - chr3L 12052766 intron rols - chr3L 12052826 intron rols - chr3L_6_12050001 chr3L_12050001 RAL-129 600 chr3L 12353925 12353953 chr3L 12354008 12354042 4 88 0.5 1.0 0.8 2.2 117 chr3L 12353925 intergenic not near genes chr3L 12353984 intergenic not near genes chr3L 12354042 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-129 601 chr3L 12369539 12369565 chr3L 12369629 12369655 4 90 1.5 1.0 1.2 1.8 116 chr3L 12369539 intron Ncc69 - chr3L 12369597 intron Ncc69 - chr3L 12369655 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-129 602 chr3L 12587356 12587383 chr3L 12587439 12587451 4 79 0.0 0.0 0.0 4.0 95 chr3L 12587356 intron ara + chr3L 12587404 intron ara + chr3L 12587451 intron ara + chr3L_4_12585001 chr3L_12585001 RAL-129 603 chr3L 12799831 12799837 chr3L 12799939 12799945 4 108 3.0 1.5 2.2 1.2 114 chr3L 12799831 intron Atg1 - chr3L 12799888 intron Atg1 - chr3L 12799945 intron Atg1 - chr3L_4_12795001 chr3L_12795001 RAL-129 604 chr3L 12874939 12874962 chr3L 12877231 12877254 jockey 5 2292 1.0 1.5 1.2 2.3 2315 chr3L 12874939 intergenic not near genes chr3L 12876096 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-129 605 chr3L 12951127 12951156 chr3L 12951204 12951233 4 77 2.0 1.0 1.5 1.6 106 chr3L 12951127 intergenic not near genes chr3L 12951180 intergenic not near genes chr3L 12951233 intergenic not near genes chr3L_4_12950001 chr3L_12950001 RAL-129 606 chr3L 12957785 12957810 chr3L 12962267 12962292 copia 6 4482 3.0 1.5 2.2 1.9 4507 chr3L 12957785 intergenic not near genes chr3L 12960038 intergenic not near genes chr3L 12962292 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-129 607 chr3L 12967162 12967167 chr3L 12967217 12967251 7 80 1.0 0.5 0.8 3.9 89 chr3L 12967162 exon Or69a - chr3L 12967206 exon Or69a - chr3L 12967251 exon Or69a - chr3L_7_12965001 chr3L_12965001 RAL-129 608 chr3L 13007693 13007943 chr3L 13007772 13008042 7 81 1.0 1.0 1.0 3.5 349 chr3L 13007693 exon CG11263 + chr3L 13007868 3` UTR CG11263 + chr3L 13008042 intergenic CG11263 +,CG14117 + chr3L_7_13005001 chr3L_13005001 RAL-129 609 chr3L 13088594 13088625 chr3L 13088764 13088795 9 168 1.5 1.5 1.5 3.6 201 chr3L 13088594 3` UTR CG11251 - chr3L 13088694 3` UTR CG11251 - chr3L 13088795 3` UTR CG11251 - chr3L_9_13085001 chr3L_13085001 RAL-129 610 chr3L 13293116 13293147 chr3L 13293201 13293232 5 84 0.5 2.5 1.5 2.0 116 chr3L 13293116 intergenic not near genes chr3L 13293174 intergenic not near genes chr3L 13293232 intergenic not near genes chr3L_5_13290001 chr3L_13290001 RAL-129 611 chr3L 13317792 13317821 chr3L 13317880 13317911 4 90 1.5 0.5 1.0 2.0 119 chr3L 13317792 intergenic not near genes chr3L 13317852 intergenic not near genes chr3L 13317911 intergenic not near genes chr3L_4_13315001 chr3L_13315001 RAL-129 612 chr3L 13455751 13455783 chr3L 13455906 13455938 6 154 1.0 3.0 2.0 2.0 187 chr3L 13455751 intron CG10738 + chr3L 13455844 intron CG10738 + chr3L 13455938 intron CG10738 + chr3L_6_13455001 chr3L_13455001 RAL-129 613 chr3L 13525157 13525188 chr3L 13532953 13532983 roo 8 7795 2.5 4.0 3.2 1.9 7826 chr3L 13525157 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_8_13525001 chr3L_13525001 RAL-129 614 chr3L 13582216 13582242 chr3L 13582306 13582330 5 86 2.0 2.0 2.0 1.7 114 chr3L 13582216 intron bru-3 - chr3L 13582273 intron bru-3 - chr3L 13582330 intron bru-3 - chr3L_5_13580001 chr3L_13580001 RAL-129 615 chr3L 13611085 13611113 chr3L 13611203 13611232 4 114 1.0 2.5 1.8 1.4 147 chr3L 13611085 intron bru-3 - chr3L 13611158 intron bru-3 - chr3L 13611232 intron bru-3 - chr3L_4_13610001 chr3L_13610001 RAL-129 616 chr3L 13714150 13714169 chr3L 13714231 13714250 5 80 1.0 2.5 1.8 1.8 100 chr3L 13714150 intron bru-3 - chr3L 13714200 intron bru-3 - chr3L 13714250 intron bru-3 - chr3L_5_13710001 chr3L_13710001 RAL-129 617 chr3L 13740033 13740051 chr3L 13740125 13740142 5 91 2.0 2.5 2.2 1.6 109 chr3L 13740033 intron bru-3 - chr3L 13740088 intron bru-3 - chr3L 13740142 intron bru-3 - chr3L_5_13740001 chr3L_13740001 RAL-129 618 chr3L 13766907 13766920 chr3L 13767004 13767013 4 96 3.0 1.5 2.2 1.2 106 chr3L 13766907 intron bru-3 - chr3L 13766960 intron bru-3 - chr3L 13767013 intron bru-3 - chr3L_4_13765001 chr3L_13765001 RAL-129 619 chr3L 13901574 13901597 chr3L 13901651 13901673 5 76 0.5 1.5 1.0 2.5 99 chr3L 13901574 intron dysc - chr3L 13901624 intron dysc - chr3L 13901673 intron dysc - chr3L_5_13900001 chr3L_13900001 RAL-129 620 chr3L 14338298 14338330 chr3L 14338394 14338426 9 96 0.0 1.5 0.8 5.0 128 chr3L 14338298 intron fz + chr3L 14338362 intron fz + chr3L 14338426 intron fz + chr3L_9_14335001 chr3L_14335001 RAL-129 621 chr3L 14468448 14468478 chr3L 14473653 14473683 copia 6 5206 0.5 1.0 0.8 3.3 5235 chr3L 14468448 intron bbg - chr3L 14471066 intron bbg - chr3L 14473683 intron bbg - chr3L_6_14470001 chr3L_14470001 RAL-129 622 chr3L 14486138 14486170 chr3L 14486215 14486246 5 77 0.0 1.0 0.5 3.3 108 chr3L 14486138 intron bbg - chr3L 14486192 intron bbg - chr3L 14486246 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-129 623 chr3L 14565748 14565777 chr3L 14565838 14565868 5 91 0.0 1.5 0.8 2.8 120 chr3L 14565748 intergenic not near genes chr3L 14565808 intergenic not near genes chr3L 14565868 intergenic not near genes chr3L_5_14565001 chr3L_14565001 RAL-129 624 chr3L 14584159 14584168 chr3L 14584245 14584255 4 87 3.5 2.5 3.0 1.0 96 chr3L 14584159 intron HGTX - chr3L 14584207 intron HGTX - chr3L 14584255 intron HGTX - chr3L_4_14580001 chr3L_14580001 RAL-129 625 chr3L 14724819 14724834 chr3L 14724903 14724918 5 84 0.0 3.0 1.5 2.0 99 chr3L 14724819 intron ome + chr3L 14724868 intron ome + chr3L 14724918 intron ome + chr3L_5_14720001 chr3L_14720001 RAL-129 626 chr3L 14809190 14809218 chr3L 14809270 14809299 6 81 0.5 1.0 0.8 3.3 109 chr3L 14809190 intron CG17839 + chr3L 14809244 intron CG17839 + chr3L 14809299 intron CG17839 + chr3L_6_14805001 chr3L_14805001 RAL-129 627 chr3L 14840358 14840389 chr3L 14840463 14840493 10 104 0.5 3.0 1.8 3.6 135 chr3L 14840358 intron CG17839 + chr3L 14840426 intron CG17839 + chr3L 14840493 intron CG17839 + chr3L_10_14840001 chr3L_14840001 RAL-129 628 chr3L 14895905 14895937 chr3L 14896001 14896031 6 96 1.0 1.0 1.0 3.0 126 chr3L 14895905 intergenic not near genes chr3L 14895968 intergenic not near genes chr3L 14896031 intergenic not near genes chr3L_6_14895001 chr3L_14895001 RAL-129 629 chr3L 14954369 14954399 chr3L 14956038 14956065 transib2 5 1668 0.0 0.5 0.2 4.2 1696 chr3L 14954369 intergenic not near genes chr3L 14955217 intergenic not near genes chr3L 14956065 intergenic not near genes chr3L_5_14955001 chr3L_14955001 RAL-129 630 chr3L 15085051 15085082 chr3L 15086217 15086248 1360 5 1161 0.5 1.0 0.8 2.8 1197 chr3L 15085051 intron cp309 - chr3L 15085650 intron cp309 - chr3L 15086248 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-129 631 chr3L 15286745 15286771 chr3L 15286826 15286852 6 81 1.0 2.5 1.8 2.1 107 chr3L 15286745 intergenic not near genes chr3L 15286798 intergenic not near genes chr3L 15286852 intergenic not near genes chr3L_6_15285001 chr3L_15285001 RAL-129 632 chr3L 15466050 15466131 chr3L 15466121 15466227 6 87 0.0 0.0 0.0 6.0 177 chr3L 15466050 intergenic not near genes chr3L 15466138 intergenic not near genes chr3L 15466227 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-129 633 chr3L 15541616 15541650 chr3L 15541707 15541741 8 89 1.5 1.5 1.5 3.2 125 chr3L 15541616 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541741 intron CrebA + chr3L_8_15540001 chr3L_15540001 RAL-129 634 chr3L 15732124 15732140 chr3L 15732205 15732221 6 81 3.0 0.0 1.5 2.4 97 chr3L 15732124 intergenic not near genes chr3L 15732172 intergenic not near genes chr3L 15732221 intergenic not near genes chr3L_6_15730001 chr3L_15730001 RAL-129 635 chr3L 15760681 15760709 chr3L 15760766 15760781 5 82 2.0 0.0 1.0 2.5 100 chr3L 15760681 intergenic not near genes chr3L 15760731 intergenic not near genes chr3L 15760781 intergenic not near genes chr3L_5_15760001 chr3L_15760001 RAL-129 636 chr3L 15784573 15784593 chr3L 15784670 15784690 5 97 0.0 0.0 0.0 5.0 117 chr3L 15784573 intergenic not near genes chr3L 15784632 intergenic not near genes chr3L 15784690 intergenic not near genes chr3L_5_15780001 chr3L_15780001 RAL-129 637 chr3L 15802571 15802589 chr3L 15802663 15802689 5 97 0.5 2.0 1.2 2.3 118 chr3L 15802571 intergenic not near genes chr3L 15802630 intergenic not near genes chr3L 15802689 intergenic not near genes chr3L_5_15800001 chr3L_15800001 RAL-129 638 chr3L 15929204 15929228 chr3L 15938351 15938375 roo 5 9147 3.0 3.0 3.0 1.2 9171 chr3L 15929204 intron Pka-C3 - chr3L 15933790 intron Pka-C3 - chr3L 15938375 intron Pka-C3 - chr3L_5_15930001 chr3L_15930001 RAL-129 639 chr3L 15946505 15946513 chr3L 15946591 15946598 4 86 3.0 0.0 1.5 1.6 93 chr3L 15946505 intron Pka-C3 - chr3L 15946552 intron Pka-C3 - chr3L 15946598 intron Pka-C3 - chr3L_4_15945001 chr3L_15945001 RAL-129 640 chr3L 15956263 15956290 chr3L 15956347 15956373 5 82 0.0 0.5 0.2 4.2 110 chr3L 15956263 3` UTR GXIVsPLA2 + chr3L 15956318 3` UTR GXIVsPLA2 + chr3L 15956373 3` UTR GXIVsPLA2 + chr3L_5_15955001 chr3L_15955001 RAL-129 641 chr3L 16236353 16236371 chr3L 16236462 16236475 5 110 1.5 1.0 1.2 2.3 122 chr3L 16236353 3` UTR l(3)72Dp + chr3L 16236414 3` UTR l(3)72Dp + chr3L 16236475 3` UTR l(3)72Dp + chr3L_5_16235001 chr3L_16235001 RAL-129 642 chr3L 16322823 16322856 chr3L 16322912 16322946 7 89 1.5 1.0 1.2 3.2 123 chr3L 16322823 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322946 intergenic not near genes chr3L_7_16320001 chr3L_16320001 RAL-129 643 chr3L 16366787 16366796 chr3L 16366911 16366935 6 130 1.5 2.5 2.0 2.0 148 chr3L 16366787 exon Cpr72Ec - chr3L 16366861 exon Cpr72Ec - chr3L 16366935 exon Cpr72Ec - chr3L_6_16365001 chr3L_16365001 RAL-129 644 chr3L 16443849 16443863 chr3L 16446188 16446197 Doc 6 2338 1.0 2.0 1.5 2.4 2348 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445023 intron,intron CG33158 +,dsx-c73A - chr3L 16446197 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-129 645 chr3L 16563232 16563243 chr3L 16563313 16563323 4 80 2.5 0.5 1.5 1.6 91 chr3L 16563232 intergenic Mipp1 - chr3L 16563278 intergenic Mipp1 - chr3L 16563323 intergenic Mipp1 - chr3L_4_16560001 chr3L_16560001 RAL-129 646 chr3L 16786972 16787002 chr3L 16787048 16787078 6 76 0.0 2.5 1.2 2.7 106 chr3L 16786972 intergenic Int6 - chr3L 16787025 intergenic Int6 - chr3L 16787078 intergenic Int6 -,CG9674 - chr3L_6_16785001 chr3L_16785001 RAL-129 647 chr3L 16802504 16802522 chr3L 16802626 16802643 5 122 0.5 0.5 0.5 3.3 139 chr3L 16802504 intron CG9674 - chr3L 16802574 intron CG9674 - chr3L 16802643 intron CG9674 - chr3L_5_16800001 chr3L_16800001 RAL-129 648 chr3L 16808044 16808068 chr3L 16808120 16808143 5 76 0.5 0.0 0.2 4.2 99 chr3L 16808044 intron nudC + chr3L 16808094 intron nudC + chr3L 16808143 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-129 649 chr3L 16817881 16817891 chr3L 16818018 16818029 4 138 1.0 2.0 1.5 1.6 148 chr3L 16817881 intron,intron nudC +,CG13024 - chr3L 16817955 intron,intron nudC +,CG13024 - chr3L 16818029 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-129 650 chr3L 16876453 16876454 chr3L 16876537 16876539 4 84 3.0 0.5 1.8 1.4 86 chr3L 16876453 intron Lmpt + chr3L 16876496 intron Lmpt + chr3L 16876539 intron Lmpt + chr3L_4_16875001 chr3L_16875001 RAL-129 651 chr3L 16945726 16945760 chr3L 16954879 16954911 roo 9 9147 2.5 1.0 1.8 3.2 9185 chr3L 16945726 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954911 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-129 652 chr3L 17105000 17105013 chr3L 17105077 17105089 4 75 2.5 4.0 3.2 1.0 89 chr3L 17105000 intron Rbp6 - chr3L 17105044 intron Rbp6 - chr3L 17105089 intron Rbp6 - chr3L_4_17105001 chr3L_17105001 RAL-129 653 chr3L 17117118 17117130 chr3L 17117203 17117214 4 84 0.0 3.0 1.5 1.6 96 chr3L 17117118 intron Rbp6 - chr3L 17117166 intron Rbp6 - chr3L 17117214 intron Rbp6 - chr3L_4_17115001 chr3L_17115001 RAL-129 654 chr3L 17367437 17367452 chr3L 17367529 17367546 6 93 2.5 1.0 1.8 2.1 109 chr3L 17367437 intergenic CR45688 +,Cad74A - chr3L 17367492 intergenic CR45688 +,Cad74A - chr3L 17367546 intergenic CR45688 +,Cad74A - chr3L_6_17365001 chr3L_17365001 RAL-129 655 chr3L 17379066 17379088 chr3L 17379148 17379156 4 78 3.5 2.0 2.8 1.1 90 chr3L 17379066 intron Cad74A - chr3L 17379111 intron Cad74A - chr3L 17379156 intron Cad74A - chr3L_4_17375001 chr3L_17375001 RAL-129 656 chr3L 17383337 17383354 chr3L 17383420 17383431 6 84 1.5 1.5 1.5 2.4 94 chr3L 17383337 intergenic CG13731 - chr3L 17383384 intergenic CG13731 - chr3L 17383431 intergenic CG13731 - chr3L_6_17380001 chr3L_17380001 RAL-129 657 chr3L 17516982 17517013 chr3L 17524540 17524571 412 5 7557 1.0 3.5 2.2 1.6 7589 chr3L 17516982 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-129 658 chr3L 17535811 17535845 chr3L 17535925 17535959 10 112 1.0 2.0 1.5 4.0 148 chr3L 17535811 intron Nedd4 + chr3L 17535885 intron Nedd4 + chr3L 17535959 intron Nedd4 + chr3L_10_17535001 chr3L_17535001 RAL-129 659 chr3L 17918370 17918404 chr3L 17921173 17921207 opus 5 2803 2.0 1.0 1.5 2.0 2837 chr3L 17918370 intergenic not near genes chr3L 17919788 intergenic not near genes chr3L 17921207 intergenic not near genes chr3L_5_17915001 chr3L_17915001 RAL-129 660 chr3L 18058001 18058010 chr3L 18058086 18058088 4 90 0.0 1.5 0.8 2.2 87 chr3L 18058001 intron Eip75B - chr3L 18058044 intron Eip75B - chr3L 18058088 intron Eip75B - chr3L_4_18055001 chr3L_18055001 RAL-129 661 chr3L 18092782 18092800 chr3L 18092896 18092915 4 114 1.5 0.0 0.8 2.2 133 chr3L 18092782 intron CG13698 - chr3L 18092848 intron CG13698 - chr3L 18092915 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-129 662 chr3L 18107626 18107650 chr3L 18107719 18107743 4 93 1.5 3.5 2.5 1.1 117 chr3L 18107626 intergenic mRpS26 +,CG5147 - chr3L 18107684 intergenic CG5147 -,mRpS26 + chr3L 18107743 intergenic CG5147 -,mRpS26 + chr3L_4_18105001 chr3L_18105001 RAL-129 663 chr3L 18198929 18198931 chr3L 24821492 24821494 6 6622563 0.0 3.0 1.5 2.4 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_6_21510001 chr3L_21510001 RAL-129 664 chr3L 18262476 18262489 chr3L 18262559 18262572 5 83 0.0 1.0 0.5 3.3 96 chr3L 18262476 intergenic not near genes chr3L 18262524 intergenic not near genes chr3L 18262572 intergenic not near genes chr3L_5_18260001 chr3L_18260001 RAL-129 665 chr3L 18376094 18376105 chr3L 18376170 18376194 5 86 1.5 0.0 0.8 2.8 100 chr3L 18376094 intergenic not near genes chr3L 18376144 intergenic not near genes chr3L 18376194 intergenic not near genes chr3L_5_18375001 chr3L_18375001 RAL-129 666 chr3L 18408738 18408748 chr3L 18408824 18408834 6 86 1.0 1.5 1.2 2.7 96 chr3L 18408738 intergenic not near genes chr3L 18408786 intergenic not near genes chr3L 18408834 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-129 667 chr3L 9013689 9013695 chr3L 18417066 18417066 4 9403374 13.0 13.0 13.0 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-129 668 chr3L 18436061 18436093 chr3L 18436159 18436188 6 97 1.5 2.0 1.8 2.1 127 chr3L 18436061 intergenic not near genes chr3L 18436124 intergenic not near genes chr3L 18436188 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-129 669 chr3L 18445258 18445269 chr3L 18445335 18445347 5 78 0.5 2.0 1.2 2.3 89 chr3L 18445258 intergenic not near genes chr3L 18445302 intergenic not near genes chr3L 18445347 intergenic not near genes chr3L_5_18445001 chr3L_18445001 RAL-129 670 chr3L 18456284 18456300 chr3L 18456372 18456387 4 88 2.0 2.5 2.2 1.2 103 chr3L 18456284 intergenic CR44670 - chr3L 18456336 intergenic CR44670 - chr3L 18456387 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-129 671 chr3L 18506132 18506161 chr3L 18509595 18509623 F-element 4 3463 1.0 1.5 1.2 1.8 3491 chr3L 18506132 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509623 intergenic not near genes chr3L_4_18505001 chr3L_18505001 RAL-129 672 chr3L 18546703 18546718 chr3L 18546797 18546812 4 94 1.5 0.0 0.8 2.2 109 chr3L 18546703 intergenic not near genes chr3L 18546758 intergenic not near genes chr3L 18546812 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-129 673 chr3L 18656187 18656217 chr3L 18656272 18656302 7 83 2.0 0.5 1.2 3.2 115 chr3L 18656187 intron MYPT-75D + chr3L 18656244 intron MYPT-75D + chr3L 18656302 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-129 674 chr3L 18772418 18772442 chr3L 18781099 18781120 roo 7 8679 3.5 0.5 2.0 2.3 8702 chr3L 18772418 intron ftz-f1 - chr3L 18776769 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-129 675 chr3L 18868963 18868991 chr3L 18869044 18869072 4 81 1.5 0.0 0.8 2.2 109 chr3L 18868963 3` UTR Dysb + chr3L 18869018 3` UTR Dysb + chr3L 18869072 3` UTR Dysb + chr3L_4_18865001 chr3L_18865001 RAL-129 676 chr3L 18929970 18929981 chr3L 18930054 18930061 5 83 2.5 3.0 2.8 1.3 91 chr3L 18929970 intron CG32204 - chr3L 18930016 intron CG32204 - chr3L 18930061 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-129 677 chr3L 18969621 18969628 chr3L 18969694 18969724 4 90 1.0 1.5 1.2 1.8 103 chr3L 18969621 intergenic not near genes chr3L 18969672 intergenic not near genes chr3L 18969724 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-129 678 chr3L 19008833 19008870 chr3L 19009174 19009208 jockey 5 338 0.5 2.5 1.5 2.0 375 chr3L 19008833 intron nkd - chr3L 19009020 intron nkd - chr3L 19009208 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-129 679 chr3L 19127370 19127394 chr3L 19127446 19127470 8 76 1.5 1.5 1.5 3.2 100 chr3L 19127370 intron CG14082 - chr3L 19127420 intron CG14082 - chr3L 19127470 intron CG14082 - chr3L_8_19125001 chr3L_19125001 RAL-129 680 chr3L 19127740 19127765 chr3L 19127827 19127852 6 87 0.5 3.0 1.8 2.1 112 chr3L 19127740 intron CG14082 - chr3L 19127796 intron CG14082 - chr3L 19127852 intron CG14082 - chr3L_6_19125001 chr3L_19125001 RAL-129 681 chr3L 19248868 19248880 chr3L 19249040 19249052 5 172 1.0 2.0 1.5 2.0 184 chr3L 19248868 intergenic not near genes chr3L 19248960 intergenic not near genes chr3L 19249052 intergenic not near genes chr3L_5_19245001 chr3L_19245001 RAL-129 682 chr3L 19342762 19342774 chr3L 19342853 19342864 4 91 1.5 0.0 0.8 2.2 102 chr3L 19342762 3` UTR CG32206 - chr3L 19342813 3` UTR CG32206 - chr3L 19342864 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-129 683 chr3L 19455362 19455376 chr3L 19455650 19455663 5 287 1.5 1.0 1.2 2.3 301 chr3L 19455362 5` UTR CR45434 + chr3L 19455512 5` UTR CR45434 + chr3L 19455663 5` UTR CR45434 + chr3L_5_19455001 chr3L_19455001 RAL-129 684 chr3L 19792360 19792373 chr3L 19792455 19792468 5 95 1.0 0.5 0.8 2.8 108 chr3L 19792360 intron,intron CG42637 -,Gyc76C - chr3L 19792414 intron,intron CG42637 -,Gyc76C - chr3L 19792468 intron,intron CG42637 -,Gyc76C - chr3L_5_19790001 chr3L_19790001 RAL-129 685 chr3L 19848509 19848535 chr3L 19857694 19857725 roo 5 9187 2.0 4.0 3.0 1.2 9216 chr3L 19848509 intron Papss + chr3L 19853117 intron Papss + chr3L 19857725 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-129 686 chr3L 20057578 20057585 chr3L 20057691 20057698 4 112 0.5 1.5 1.0 2.0 120 chr3L 20057578 intergenic not near genes chr3L 20057638 intergenic not near genes chr3L 20057698 intergenic not near genes chr3L_4_20055001 chr3L_20055001 RAL-129 687 chr3L 20143079 20143111 chr3L 20143159 20143191 9 80 4.0 1.0 2.5 2.6 112 chr3L 20143079 intergenic not near genes chr3L 20143135 intergenic not near genes chr3L 20143191 intergenic not near genes chr3L_9_20140001 chr3L_20140001 RAL-129 688 chr3L 20257340 20257363 chr3L 20258460 20258483 pogo 4 1119 2.5 1.5 2.0 1.3 1143 chr3L 20257340 intron rdgC + chr3L 20257912 intron rdgC + chr3L 20258483 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-129 689 chr3L 20386938 20386968 chr3L 20387040 20387070 4 100 0.0 2.0 1.0 2.0 132 chr3L 20386938 intron fbl + chr3L 20387004 intron fbl + chr3L 20387070 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-129 690 chr3L 20476754 20476786 chr3L 20484353 20484384 springer 10 7598 0.5 1.5 1.0 5.0 7630 chr3L 20476754 3` UTR isoQC + chr3L 20480569 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_10_20480001 chr3L_20480001 RAL-129 691 chr3L 20739494 20739506 chr3L 20739609 20739621 6 115 2.5 2.0 2.2 1.9 127 chr3L 20739494 intron CG13252 + chr3L 20739558 intron CG13252 + chr3L 20739621 intron CG13252 + chr3L_6_20735001 chr3L_20735001 RAL-129 692 chr3L 20849278 20849300 chr3L 20849357 20849380 5 79 0.5 1.5 1.0 2.5 102 chr3L 20849278 intron CG32432 - chr3L 20849329 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-129 693 chr3L 20913759 20913773 chr3L 20913835 20913855 4 80 2.5 2.5 2.5 1.1 96 chr3L 20913759 intergenic CR43930 - chr3L 20913807 intergenic CR43930 - chr3L 20913855 intergenic CR43930 - chr3L_4_20910001 chr3L_20910001 RAL-129 694 chr3L 20986760 20986788 chr3L 20986838 20986866 5 77 2.0 2.0 2.0 1.7 106 chr3L 20986760 intergenic not near genes chr3L 20986813 intergenic not near genes chr3L 20986866 intergenic not near genes chr3L_5_20985001 chr3L_20985001 RAL-129 695 chr3L 21010372 21010396 chr3L 21010479 21010479 6 101 4.5 1.0 2.8 1.6 107 chr3L 21010372 intron skd - chr3L 21010426 intron skd - chr3L 21010479 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-129 696 chr3L 21014922 21014945 chr3L 21023402 21023421 Tirant 4 8478 1.5 2.0 1.8 1.4 8499 chr3L 21014922 intron skd - chr3L 21019172 intron skd - chr3L 21023421 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-129 697 chr3L 21057137 21057162 chr3L 21057352 21057377 5 215 3.0 1.5 2.2 1.6 240 chr3L 21057137 intron siz + chr3L 21057257 intron siz + chr3L 21057377 intron siz + chr3L_5_21055001 chr3L_21055001 RAL-129 698 chr3L 21064798 21064825 chr3L 21064914 21064936 5 114 2.0 2.5 2.2 1.6 138 chr3L 21064798 intron siz + chr3L 21064867 intron siz + chr3L 21064936 intron siz + chr3L_5_21060001 chr3L_21060001 RAL-129 699 chr3L 21071313 21071342 chr3L 21071476 21071505 6 162 0.5 1.0 0.8 3.3 192 chr3L 21071313 intron siz + chr3L 21071409 intron siz + chr3L 21071505 intron siz + chr3L_6_21070001 chr3L_21070001 RAL-129 700 chr3L 21151864 21151895 chr3L 21156946 21156979 flea 4 5084 1.5 1.5 1.5 1.6 5115 chr3L 21151864 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156979 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-129 701 chr3L 21306155 21306170 chr3L 21315313 21315319 roo 4 9156 1.5 1.5 1.5 1.6 9164 chr3L 21306155 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310737 intron Pc - chr3L 21315319 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-129 702 chr3L 21749313 21749351 chr3L 21754472 21754481 Doc 4 5148 1.0 2.5 1.8 1.4 5168 chr3L 21749313 intron Syn1 - chr3L 21751897 intron Syn1 - chr3L 21754481 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-129 703 chr3L 21776675 21776698 chr3L 21776762 21776785 5 87 0.0 0.0 0.0 5.0 110 chr3L 21776675 intron,intron CG42689 +,CG42552 + chr3L 21776730 intron,intron CG42689 +,CG42552 + chr3L 21776785 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-129 704 chr3L 21868345 21868374 chr3L 21868669 21868697 INE-1 6 323 3.5 1.5 2.5 1.7 352 chr3L 21868345 intron mub + chr3L 21868521 intron mub + chr3L 21868697 intron mub + chr3L_6_21865001 chr3L_21865001 RAL-129 705 chr3L 21883815 21883841 chr3L 21883894 21883918 7 79 1.0 2.5 1.8 2.5 103 chr3L 21883815 intron mub + chr3L 21883866 intron mub + chr3L 21883918 intron mub + chr3L_7_21880001 chr3L_21880001 RAL-129 706 chr3L 21905333 21905365 chr3L 21905410 21905440 9 74 2.0 3.0 2.5 2.6 107 chr3L 21905333 intron mub + chr3L 21905386 intron mub + chr3L 21905440 intron mub + chr3L_9_21905001 chr3L_21905001 RAL-129 707 chr3L 22099683 22099704 chr3L 22105860 22105874 3S18 5 6180 2.5 2.5 2.5 1.4 6191 chr3L 22099683 intergenic not near genes chr3L 22102778 intergenic not near genes chr3L 22105874 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-129 708 chr3L 22223438 22223471 chr3L 22223599 22223632 8 159 0.5 2.0 1.2 3.6 194 chr3L 22223438 intron olf413 + chr3L 22223535 intron olf413 + chr3L 22223632 intron olf413 + chr3L_8_22220001 chr3L_22220001 RAL-129 709 chr3L 22379940 22379967 chr3L 22380039 22380066 7 99 1.5 4.0 2.8 1.8 126 chr3L 22379940 intron Ten-m - chr3L 22380003 intron Ten-m - chr3L 22380066 intron Ten-m - chr3L_7_22380001 chr3L_22380001 RAL-129 710 chr3L 22413877 22413896 chr3L 22413957 22413980 8 83 3.5 1.0 2.2 2.5 103 chr3L 22413877 intergenic not near genes chr3L 22413928 intergenic not near genes chr3L 22413980 intergenic not near genes chr3L_8_22410001 chr3L_22410001 RAL-129 711 chr3L 22447197 22447226 chr3L 22447285 22447314 6 90 2.0 3.0 2.5 1.7 117 chr3L 22447197 intergenic not near genes chr3L 22447256 intergenic not near genes chr3L 22447314 intergenic not near genes chr3L_6_22445001 chr3L_22445001 RAL-129 712 chr3L 22477052 22477084 chr3L 22477143 22477171 7 90 0.0 1.5 0.8 3.9 119 chr3L 22477052 intergenic not near genes chr3L 22477112 intergenic not near genes chr3L 22477171 intergenic not near genes chr3L_7_22475001 chr3L_22475001 RAL-129 713 chr3L 22577630 22577643 chr3L 22582402 22582430 Doc 4 4783 3.5 1.5 2.5 1.1 4800 chr3L 22577630 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582430 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-129 714 chr3L 22617188 22617216 chr3L 22624640 22624641 blood 6 7446 3.0 2.0 2.5 1.7 7453 chr3L 22617188 intron CG14459 - chr3L 22620914 intron CG14459 - chr3L 22624641 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-129 715 chr3L 22626870 22626897 chr3L 22626959 22626987 4 90 2.0 3.0 2.5 1.1 117 chr3L 22626870 intron CG14459 - chr3L 22626928 intron CG14459 - chr3L 22626987 intron CG14459 - chr3L_4_22625001 chr3L_22625001 RAL-129 716 chr3L 22678075 22678103 chr3L 22678167 22678196 7 82 4.5 1.0 2.8 1.8 121 chr3L 22678075 intron CG14457 + chr3L 22678136 intron CG14457 + chr3L 22678196 intron CG14457 + chr3L_7_22675001 chr3L_22675001 RAL-129 717 chr3L 22761387 22761415 chr3L 22766821 22766849 Ivk 6 5432 0.5 1.0 0.8 3.3 5462 chr3L 22761387 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766849 intron SPoCk + chr3L_6_22760001 chr3L_22760001 RAL-129 718 chr3L 22853467 22853707 chr3L 22853554 22853793 6 86 2.5 1.5 2.0 2.0 326 chr3L 22853467 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853630 5` UTR CR43426 + chr3L 22853793 5` UTR CR43426 + chr3L_6_22850001 chr3L_22850001 RAL-129 719 chr3L 22865991 22866008 chr3L 22867114 22867141 Doc 5 1130 0.5 0.0 0.2 4.2 1150 chr3L 22865991 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867141 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-129 720 chr3L 22881845 22881853 chr3L 22882198 22882213 4 358 1.0 4.5 2.8 1.1 368 chr3L 22881845 intron slif + chr3L 22882029 intron slif + chr3L 22882213 intron slif + chr3L_4_22880001 chr3L_22880001 RAL-129 721 chr3L 22908066 22908066 chr3L 24821490 24821495 4 1913428 8.5 3.0 5.8 0.6 1913429 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821495 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-129 722 chr3L 22908067 22908067 chr3L 24821491 24821494 4 1913426 8.5 3.0 5.8 0.6 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_4_23860001 chr3L_23860001 RAL-129 723 chr3L 22909028 22909052 chr3L 22909119 22909143 9 91 2.5 2.5 2.5 2.6 115 chr3L 22909028 intergenic CR45661 + chr3L 22909086 intergenic CR45661 + chr3L 22909143 intergenic CR45661 + chr3L_9_22905001 chr3L_22905001 RAL-129 724 chr3L 22962456 22962473 chr3L 22963777 22963794 INE-1 8 1320 1.0 2.5 1.8 2.9 1338 chr3L 22962456 intergenic not near genes chr3L 22963125 intergenic not near genes chr3L 22963794 intergenic not near genes chr3L_8_22960001 chr3L_22960001 RAL-129 725 chr3L 22964706 22964737 chr3L 22964800 22964831 9 93 2.5 1.0 1.8 3.2 125 chr3L 22964706 intergenic not near genes chr3L 22964768 intergenic not near genes chr3L 22964831 intergenic not near genes chr3L_9_22960001 chr3L_22960001 RAL-129 726 chr3L 22985301 22985333 chr3L 22985384 22985416 6 83 0.0 1.0 0.5 4.0 115 chr3L 22985301 intergenic not near genes chr3L 22985358 intergenic not near genes chr3L 22985416 intergenic not near genes chr3L_6_22985001 chr3L_22985001 RAL-129 727 chr3L 22989875 22989891 chr3L 22996849 22996865 297 5 6974 2.5 2.0 2.2 1.6 6990 chr3L 22989875 intergenic not near genes chr3L 22993370 intergenic not near genes chr3L 22996865 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-129 728 chr3L 23182837 23182851 chr3L 23182909 23182927 6 75 0.5 4.0 2.2 1.9 90 chr3L 23182837 intron CG34031 + chr3L 23182882 intron CG34031 + chr3L 23182927 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-129 729 chr3L 24168790 24168821 chr3L 24176118 24176131 ZAM 6 7321 2.5 2.5 2.5 1.7 7341 chr3L 24168790 intron Snap25 + chr3L 24172460 intron Snap25 + chr3L 24176131 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-129 730 chr3L 24492448 24492475 chr3L 24492577 24492607 7 131 2.0 1.5 1.8 2.5 159 chr3L 24492448 intergenic not near genes chr3L 24492528 intergenic not near genes chr3L 24492607 intergenic not near genes chr3L_7_24490001 chr3L_24490001 RAL-129 731 chr3L 24740974 24741001 chr3L 24741051 24741078 4 77 1.0 1.0 1.0 2.0 104 chr3L 24740974 exon scro + chr3L 24741026 intron scro + chr3L 24741078 intron scro + chr3L_4_24740001 chr3L_24740001 RAL-129 732 chr3L 18198930 18198930 chr3L 24821492 24821492 4 6622562 0.0 3.0 1.5 1.6 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-129 733 chr3L 18198931 18198931 chr3L 24821493 24821493 5 6622562 0.0 3.0 1.5 2.0 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-129 734 chr3L 25627821 25627830 chr3L 25627907 25627913 4 85 1.5 3.5 2.5 1.1 92 chr3L 25627821 intron CG41343 - chr3L 25627867 intron CG41343 - chr3L 25627913 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-129 735 chr3L 25628499 25628526 chr3L 25633265 25633297 F-element 6 4769 0.0 3.0 1.5 2.4 4798 chr3L 25628499 intron CG41343 - chr3L 25630898 intron CG41343 - chr3L 25633297 intron CG41343 - chr3L_6_25630001 chr3L_25630001 RAL-129 736 chr3L 25887128 25887153 chr3L 25887280 25887307 4 154 1.5 2.0 1.8 1.4 179 chr3L 25887128 intron CG40178 - chr3L 25887218 intron CG40178 - chr3L 25887307 intron CG40178 - chr3L_4_25885001 chr3L_25885001 RAL-129 737 chr3L 27167947 27167982 chr3L 27168067 27168081 8 108 0.5 4.5 2.5 2.3 134 chr3L 27167947 intergenic not near genes chr3L 27168014 intergenic not near genes chr3L 27168081 intergenic not near genes chr3L_8_27165001 chr3L_27165001 RAL-129 738 chr3L 27390691 27390709 chr3L 27390770 27390788 7 79 15.0 11.0 13.0 0.5 97 chr3L 27390691 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390788 intron Dbp80 + chr3L_7_27390001 chr3L_27390001 RAL-129 739 chr3R 1443434 1443454 chr3R 1443510 1443530 9 74 4.5 1.0 2.8 2.4 96 chr3R 1443434 intron CG40155 + chr3R 1443482 intron CG40155 + chr3R 1443530 intron CG40155 + chr3R_9_1440001 chr3R_1440001 RAL-129 740 chr3R 2534146 2534165 chr3R 2541702 2541704 8 7558 7.5 8.5 8.0 0.9 7558 chr3R 2534146 intergenic not near genes chr3R 2537925 intergenic not near genes chr3R 2541704 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-129 741 chr3R 4132904 4132925 chr3R 4133058 4133079 4 154 0.5 1.0 0.8 2.2 175 chr3R 4132904 5` UTR Gfat1 + chr3R 4132992 intron Gfat1 + chr3R 4133079 intron Gfat1 + chr3R_4_4130001 chr3R_4130001 RAL-129 742 chr3R 4408410 4408442 chr3R 4412714 4412746 Juan 6 4304 2.5 2.0 2.2 1.9 4336 chr3R 4408410 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-129 743 chr3R 4861575 4861591 chr3R 4861655 4861670 4 79 2.0 4.0 3.0 1.0 95 chr3R 4861575 intron opa + chr3R 4861622 intron opa + chr3R 4861670 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-129 744 chr3R 4896296 4896316 chr3R 4896389 4896408 5 93 1.0 1.5 1.2 2.3 112 chr3R 4896296 intergenic CR45580 + chr3R 4896352 intergenic CR45580 + chr3R 4896408 intergenic CR45580 + chr3R_5_4895001 chr3R_4895001 RAL-129 745 chr3R 4984300 4984328 chr3R 4984392 4984418 6 90 2.5 1.5 2.0 2.0 118 chr3R 4984300 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984359 intergenic CG14662 -,CR43424 -,CR43478 + chr3R 4984418 intergenic CR43424 -,CG14662 - chr3R_6_4980001 chr3R_4980001 RAL-129 746 chr3R 5045846 5045866 chr3R 5052946 5052968 HMS-Beagle 5 7102 3.0 1.5 2.2 1.6 7122 chr3R 5045846 intron CR43635 - chr3R 5049407 intergenic not near genes chr3R 5052968 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-129 747 chr3R 5067983 5068013 chr3R 5073499 5073530 mdg3 6 5516 2.5 5.0 3.8 1.2 5547 chr3R 5067983 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073530 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-129 748 chr3R 5191366 5191390 chr3R 5191645 5191671 6 277 19.0 11.0 15.0 0.4 305 chr3R 5191366 intron cno - chr3R 5191518 intron cno - chr3R 5191671 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-129 749 chr3R 5338396 5338428 chr3R 5343573 5343605 Rt1c 10 5169 2.0 2.5 2.2 3.1 5209 chr3R 5338396 intron mtd - chr3R 5341000 intron mtd - chr3R 5343605 intron mtd - chr3R_10_5340001 chr3R_5340001 RAL-129 750 chr3R 5385973 5386002 chr3R 5386144 5386172 9 170 3.0 2.5 2.8 2.4 199 chr3R 5385973 intron kkv - chr3R 5386072 intron kkv - chr3R 5386172 intron kkv - chr3R_9_5385001 chr3R_5385001 RAL-129 751 chr3R 5445970 5445994 chr3R 5452429 5452454 Burdock 4 6460 0.5 2.0 1.2 1.8 6484 chr3R 5445970 intron CG14669 + chr3R 5449212 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-129 752 chr3R 5726103 5726126 chr3R 5726264 5726288 7 159 1.0 1.0 1.0 3.5 185 chr3R 5726103 intergenic not near genes chr3R 5726196 intergenic not near genes chr3R 5726288 intergenic not near genes chr3R_7_5725001 chr3R_5725001 RAL-129 753 chr3R 5746015 5746045 chr3R 5746256 5746286 pogo 6 237 2.0 3.0 2.5 1.7 271 chr3R 5746015 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-129 754 chr3R 5747027 5747047 chr3R 5753216 5753237 diver 5 6190 2.5 2.0 2.2 1.6 6210 chr3R 5747027 intergenic Madm + chr3R 5750132 intergenic not near genes chr3R 5753237 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-129 755 chr3R 5809122 5809145 chr3R 5809363 5809386 pogo 9 240 1.0 5.5 3.2 2.1 264 chr3R 5809122 3` UTR CG11000 + chr3R 5809254 3` UTR CG11000 + chr3R 5809386 3` UTR CG11000 + chr3R_9_5805001 chr3R_5805001 RAL-129 756 chr3R 5840825 5840851 chr3R 5840913 5840940 8 89 2.0 1.5 1.8 2.9 115 chr3R 5840825 intergenic CG1213 + chr3R 5840882 intergenic CG1213 + chr3R 5840940 intergenic CG1213 + chr3R_8_5840001 chr3R_5840001 RAL-129 757 chr3R 5935365 5935391 chr3R 5935441 5935467 6 72 2.5 1.0 1.8 2.1 102 chr3R 5935365 intron CG34113 - chr3R 5935416 intron CG34113 - chr3R 5935467 intron CG34113 - chr3R_6_5935001 chr3R_5935001 RAL-129 758 chr3R 6015964 6015991 chr3R 6024441 6024456 Tirant 8 8478 1.0 2.0 1.5 3.2 8492 chr3R 6015964 intergenic not near genes chr3R 6020210 intergenic not near genes chr3R 6024456 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-129 759 chr3R 6048455 6048464 chr3R 6048538 6048547 5 83 3.0 2.0 2.5 1.4 92 chr3R 6048455 intergenic not near genes chr3R 6048501 intergenic not near genes chr3R 6048547 intergenic not near genes chr3R_5_6045001 chr3R_6045001 RAL-129 760 chr3R 6175178 6175204 chr3R 6182443 6182465 HMS-Beagle2 5 7268 2.0 0.5 1.2 2.3 7287 chr3R 6175178 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182465 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-129 761 chr3R 6226620 6226653 chr3R 6226708 6226741 6 87 4.0 3.0 3.5 1.3 121 chr3R 6226620 intergenic not near genes chr3R 6226680 intergenic not near genes chr3R 6226741 intergenic not near genes chr3R_6_6225001 chr3R_6225001 RAL-129 762 chr3R 6484064 6484091 chr3R 6484155 6484184 6 92 1.0 2.5 1.8 2.1 120 chr3R 6484064 intron CG15186 + chr3R 6484124 intron CG15186 + chr3R 6484184 intron CG15186 + chr3R_6_6480001 chr3R_6480001 RAL-129 763 chr3R 6610046 6610074 chr3R 6610198 6610226 7 152 1.5 0.0 0.8 3.9 180 chr3R 6610046 intergenic not near genes chr3R 6610136 intergenic not near genes chr3R 6610226 intergenic not near genes chr3R_7_6610001 chr3R_6610001 RAL-129 764 chr3R 6639911 6639929 chr3R 6639989 6640007 5 77 0.5 0.0 0.2 4.2 96 chr3R 6639911 intergenic not near genes chr3R 6639959 intergenic not near genes chr3R 6640007 intergenic not near genes chr3R_5_6635001 chr3R_6635001 RAL-129 765 chr3R 6655765 6655781 chr3R 6656037 6656053 4 272 4.0 3.0 3.5 0.9 288 chr3R 6655765 exon Taf1 + chr3R 6655909 3` UTR Taf1 + chr3R 6656053 intergenic Taf1 +,CG1307 - chr3R_4_6655001 chr3R_6655001 RAL-129 766 chr3R 6663602 6663632 chr3R 6663682 6663712 8 77 1.0 3.5 2.2 2.5 110 chr3R 6663602 intron lab - chr3R 6663657 intron lab - chr3R 6663712 intron lab - chr3R_8_6660001 chr3R_6660001 RAL-129 767 chr3R 6737500 6737532 chr3R 6739287 6739313 Doc 5 1785 2.0 0.5 1.2 2.3 1813 chr3R 6737500 intron pb - chr3R 6738406 intron pb - chr3R 6739313 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-129 768 chr3R 6741014 6741036 chr3R 6741097 6741100 5 78 0.0 0.5 0.2 4.2 86 chr3R 6741014 intron pb - chr3R 6741057 intron pb - chr3R 6741100 intron pb - chr3R_5_6740001 chr3R_6740001 RAL-129 769 chr3R 6819633 6819664 chr3R 6819717 6819748 4 84 1.5 2.0 1.8 1.4 115 chr3R 6819633 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819690 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819748 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_4_6815001 chr3R_6815001 RAL-129 770 chr3R 6914751 6914757 chr3R 6914852 6914855 5 99 2.5 2.0 2.2 1.6 104 chr3R 6914751 intron Antp - chr3R 6914803 intron Antp - chr3R 6914855 intron Antp - chr3R_5_6910001 chr3R_6910001 RAL-129 771 chr3R 7092783 7092818 chr3R 7093347 7093382 10 563 0.5 3.5 2.0 3.3 599 chr3R 7092783 3` UTR CR43685 - chr3R 7093082 intron CR43685 - chr3R 7093382 3` UTR CR43685 - chr3R_10_7090001 chr3R_7090001 RAL-129 772 chr3R 7103287 7103319 chr3R 7103362 7103382 6 74 3.0 1.0 2.0 2.0 95 chr3R 7103287 intron Alh - chr3R 7103334 intron Alh - chr3R 7103382 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-129 773 chr3R 7404951 7404970 chr3R 7405026 7405038 5 74 0.0 0.0 0.0 5.0 87 chr3R 7404951 intergenic not near genes chr3R 7404994 intergenic not near genes chr3R 7405038 intergenic not near genes chr3R_5_7400001 chr3R_7400001 RAL-129 774 chr3R 7621530 7621564 chr3R 7621621 7621654 4 88 0.0 1.0 0.5 2.7 124 chr3R 7621530 intron CG34127 - chr3R 7621592 intron CG34127 - chr3R 7621654 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-129 775 chr3R 7639793 7639817 chr3R 7639930 7639940 5 136 1.0 0.5 0.8 2.8 147 chr3R 7639793 intergenic CG34127 - chr3R 7639866 intergenic CG34127 - chr3R 7639940 intergenic not near genes chr3R_5_7635001 chr3R_7635001 RAL-129 776 chr3R 7809930 7809950 chr3R 7810008 7810028 5 79 1.0 2.0 1.5 2.0 98 chr3R 7809930 5` UTR CG2993 - chr3R 7809979 5` UTR CG2993 - chr3R 7810028 intergenic CG2993 - chr3R_5_7805001 chr3R_7805001 RAL-129 777 chr3R 8013889 8013919 chr3R 8022853 8022883 5 8964 17.0 16.0 16.5 0.3 8994 chr3R 8013889 exon Pbp95 + chr3R 8018386 exon CG2747 - chr3R 8022883 exon CG2747 - chr3R_5_8015001 chr3R_8015001 RAL-129 778 chr3R 8090271 8090301 chr3R 8090448 8090475 6 176 1.5 1.0 1.2 2.7 204 chr3R 8090271 5` UTR CR44330 + chr3R 8090373 intergenic CR44330 + chr3R 8090475 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-129 779 chr3R 8207572 8207587 chr3R 8208406 8208432 F-element 4 841 3.5 2.5 3.0 1.0 860 chr3R 8207572 intergenic not near genes chr3R 8208002 intergenic not near genes chr3R 8208432 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-129 780 chr3R 8230362 8230394 chr3R 8230446 8230478 8 83 0.5 1.5 1.0 4.0 116 chr3R 8230362 3` UTR CR45551 - chr3R 8230420 3` UTR CR45551 - chr3R 8230478 3` UTR CR45551 - chr3R_8_8230001 chr3R_8230001 RAL-129 781 chr3R 8339246 8339247 chr3R 21907534 21907536 6 13568288 9.5 10.5 10.0 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-129 782 chr3R 8403028 8403040 chr3R 8412171 8412206 roo 8 9157 2.0 1.5 1.8 2.9 9178 chr3R 8403028 intron CG45263 - chr3R 8407617 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-129 783 chr3R 8601776 8601796 chr3R 8610919 8610947 roo 4 9146 1.5 1.0 1.2 1.8 9171 chr3R 8601776 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610947 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-129 784 chr3R 8638060 8638091 chr3R 8638171 8638202 4 111 0.5 1.5 1.0 2.0 142 chr3R 8638060 intergenic not near genes chr3R 8638131 intergenic not near genes chr3R 8638202 intergenic not near genes chr3R_4_8635001 chr3R_8635001 RAL-129 785 chr3R 8875538 8875572 chr3R 8875615 8875649 5 72 2.0 3.0 2.5 1.4 111 chr3R 8875538 intron pyd - chr3R 8875594 intron pyd - chr3R 8875649 intron pyd - chr3R_5_8875001 chr3R_8875001 RAL-129 786 chr3R 9036387 9036401 chr3R 9036465 9036478 5 78 3.5 2.5 3.0 1.2 91 chr3R 9036387 intron neur - chr3R 9036432 intron neur - chr3R 9036478 intron neur - chr3R_5_9035001 chr3R_9035001 RAL-129 787 chr3R 9083165 9083173 chr3R 9083228 9083257 5 80 0.5 2.5 1.5 2.0 92 chr3R 9083165 intron pum - chr3R 9083211 intron pum - chr3R 9083257 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-129 788 chr3R 9101855 9101867 chr3R 9101936 9101964 4 88 2.0 1.5 1.8 1.4 109 chr3R 9101855 intron pum - chr3R 9101910 intron pum - chr3R 9101964 intron pum - chr3R_4_9100001 chr3R_9100001 RAL-129 789 chr3R 9141141 9141169 chr3R 9141225 9141253 5 83 0.5 0.5 0.5 3.3 112 chr3R 9141141 intron pum - chr3R 9141197 intron pum - chr3R 9141253 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-129 790 chr3R 9143039 9143052 chr3R 9143180 9143193 5 141 2.0 1.5 1.8 1.8 154 chr3R 9143039 intron pum - chr3R 9143116 intron pum - chr3R 9143193 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-129 791 chr3R 9149687 9149712 chr3R 9149767 9149789 5 76 2.5 1.0 1.8 1.8 102 chr3R 9149687 intron pum - chr3R 9149738 intron pum - chr3R 9149789 intron pum - chr3R_5_9145001 chr3R_9145001 RAL-129 792 chr3R 9204248 9204273 chr3R 9204335 9204359 4 83 2.0 1.5 1.8 1.4 111 chr3R 9204248 intron pum - chr3R 9204304 intron pum - chr3R 9204359 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-129 793 chr3R 9601474 9601481 chr3R 9601592 9601599 4 118 1.5 5.0 3.2 1.0 125 chr3R 9601474 intron CG8312 + chr3R 9601536 intron CG8312 + chr3R 9601599 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-129 794 chr3R 9836908 9836936 chr3R 9836999 9837026 9 91 3.0 3.0 3.0 2.2 118 chr3R 9836908 intron Teh1 - chr3R 9836967 intron Teh1 - chr3R 9837026 intron Teh1 - chr3R_9_9835001 chr3R_9835001 RAL-129 795 chr3R 10085967 10085972 chr3R 10086249 10086262 5 291 1.0 1.0 1.0 2.5 295 chr3R 10085967 intron CR45054 + chr3R 10086114 intron CR45054 + chr3R 10086262 intron CR45054 + chr3R_5_10085001 chr3R_10085001 RAL-129 796 chr3R 10114287 10114294 chr3R 10114641 10114648 4 354 2.5 3.0 2.8 1.1 361 chr3R 10114287 intron CG3940 + chr3R 10114468 intron CG3940 + chr3R 10114648 intron CG3940 + chr3R_4_10110001 chr3R_10110001 RAL-129 797 chr3R 10306950 10306984 chr3R 10312209 10312243 7 5259 16.5 8.5 12.5 0.5 5293 chr3R 10306950 exon CG43143 + chr3R 10309596 exon CG6293 - chr3R 10312243 3` UTR Bruce - chr3R_7_10305001 chr3R_10305001 RAL-129 798 chr3R 10641591 10641621 chr3R 10641671 10641700 7 79 3.0 2.0 2.5 2.0 109 chr3R 10641591 5` UTR CR44018 + chr3R 10641646 5` UTR CR44018 + chr3R 10641700 5` UTR CR44018 + chr3R_7_10640001 chr3R_10640001 RAL-129 799 chr3R 10716444 10716463 chr3R 10716592 10716611 4 148 1.5 2.5 2.0 1.3 167 chr3R 10716444 intergenic not near genes chr3R 10716528 intergenic not near genes chr3R 10716611 intergenic not near genes chr3R_4_10715001 chr3R_10715001 RAL-129 800 chr3R 10723502 10723518 chr3R 10723586 10723602 8 83 1.5 3.0 2.2 2.5 100 chr3R 10723502 intergenic not near genes chr3R 10723552 intergenic not near genes chr3R 10723602 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-129 801 chr3R 10745428 10745436 chr3R 10745514 10745522 4 86 1.5 2.5 2.0 1.3 94 chr3R 10745428 intron TkR86C - chr3R 10745475 intron TkR86C - chr3R 10745522 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-129 802 chr3R 10804171 10804196 chr3R 10811702 10811728 17.6 4 7532 1.5 0.5 1.0 2.0 7557 chr3R 10804171 intergenic CG14692 - chr3R 10807950 intergenic not near genes chr3R 10811728 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-129 803 chr3R 10920058 10920079 chr3R 10920130 10920157 5 77 2.0 1.5 1.8 1.8 99 chr3R 10920058 intergenic not near genes chr3R 10920108 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-129 804 chr3R 11085469 11085480 chr3R 11085544 11085557 4 76 0.5 1.5 1.0 2.0 88 chr3R 11085469 3` UTR CR44940 - chr3R 11085513 intergenic CR44940 - chr3R 11085557 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-129 805 chr3R 11088677 11088690 chr3R 11088769 11088782 4 92 1.5 0.5 1.0 2.0 105 chr3R 11088677 3` UTR CG43449 + chr3R 11088730 3` UTR CG43449 + chr3R 11088782 3` UTR CG43449 + chr3R_4_11085001 chr3R_11085001 RAL-129 806 chr3R 11090845 11090871 chr3R 11090933 11090959 6 86 1.0 1.5 1.2 2.7 114 chr3R 11090845 intergenic not near genes chr3R 11090902 intergenic not near genes chr3R 11090959 intergenic not near genes chr3R_6_11090001 chr3R_11090001 RAL-129 807 chr3R 11157070 11157108 chr3R 11157161 11157171 11 87 3.0 2.5 2.8 2.9 101 chr3R 11157070 intergenic Ugt86Da + chr3R 11157120 5` UTR Ugt86Da + chr3R 11157171 5` UTR Ugt86Da + chr3R_11_11155001 chr3R_11155001 RAL-129 808 chr3R 11307207 11307222 chr3R 11307293 11307298 4 83 1.0 3.5 2.2 1.2 91 chr3R 11307207 intergenic not near genes chr3R 11307252 intergenic not near genes chr3R 11307298 intergenic not near genes chr3R_4_11305001 chr3R_11305001 RAL-129 809 chr3R 11379234 11379266 chr3R 11388389 11388421 roo 7 9154 0.5 1.5 1.0 3.5 9187 chr3R 11379234 intron pros + chr3R 11383828 intron pros + chr3R 11388421 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-129 810 chr3R 11476957 11476971 chr3R 11477059 11477073 6 102 2.0 1.0 1.5 2.4 116 chr3R 11476957 intergenic not near genes chr3R 11477015 intergenic not near genes chr3R 11477073 intergenic not near genes chr3R_6_11475001 chr3R_11475001 RAL-129 811 chr3R 11518813 11518845 chr3R 11518904 11518936 7 90 3.0 2.5 2.8 1.8 123 chr3R 11518813 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518936 intergenic not near genes chr3R_7_11515001 chr3R_11515001 RAL-129 812 chr3R 11558349 11558369 chr3R 11560685 11560686 5 2331 18.0 17.5 17.8 0.3 2337 chr3R 11558349 5` UTR CG10898 + chr3R 11559518 exon CG10898 + chr3R 11560686 3` UTR,exon fabp -,sea - chr3R_5_11555001 chr3R_11555001 RAL-129 813 chr3R 11664793 11664822 chr3R 11664884 11664912 5 91 2.0 2.0 2.0 1.7 119 chr3R 11664793 intron CG42327 + chr3R 11664852 intron CG42327 + chr3R 11664912 intron CG42327 + chr3R_5_11660001 chr3R_11660001 RAL-129 814 chr3R 11740435 11740467 chr3R 11743542 11743575 14 3108 28.5 26.5 27.5 0.5 3140 chr3R 11740435 exon Blm - chr3R 11742005 5` UTR CG14722 + chr3R 11743575 exon CG14722 + chr3R_14_11740001 chr3R_11740001 RAL-129 815 chr3R 11841089 11841096 chr3R 11846263 11846287 BS 4 5186 1.5 3.0 2.2 1.2 5198 chr3R 11841089 intron CG6959 - chr3R 11843688 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-129 816 chr3R 11853440 11853469 chr3R 11853589 11853616 4 148 2.0 3.0 2.5 1.1 176 chr3R 11853440 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853616 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-129 817 chr3R 11853771 11853794 chr3R 11853876 11853899 5 105 4.5 2.0 3.2 1.2 128 chr3R 11853771 intron CG6959 - chr3R 11853835 intron CG6959 - chr3R 11853899 intron CG6959 - chr3R_5_11850001 chr3R_11850001 RAL-129 818 chr3R 12022883 12022907 chr3R 12025060 12025069 pogo 4 2173 2.5 1.0 1.8 1.4 2186 chr3R 12022883 intergenic not near genes chr3R 12023976 intergenic not near genes chr3R 12025069 intergenic not near genes chr3R_4_12020001 chr3R_12020001 RAL-129 819 chr3R 12081995 12082030 chr3R 12082071 12082106 8 76 0.5 1.0 0.8 4.4 111 chr3R 12081995 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082106 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-129 820 chr3R 12182954 12182988 chr3R 12183038 12183070 5 81 1.5 1.0 1.2 2.3 116 chr3R 12182954 intergenic not near genes chr3R 12183012 intergenic not near genes chr3R 12183070 intergenic not near genes chr3R_5_12180001 chr3R_12180001 RAL-129 821 chr3R 12299817 12299831 chr3R 12299910 12299923 5 93 1.5 3.5 2.5 1.4 106 chr3R 12299817 intron svp + chr3R 12299870 intron svp + chr3R 12299923 intron svp + chr3R_5_12295001 chr3R_12295001 RAL-129 822 chr3R 12724323 12724337 chr3R 12724394 12724415 4 76 3.5 0.5 2.0 1.3 92 chr3R 12724323 intergenic not near genes chr3R 12724369 intergenic not near genes chr3R 12724415 intergenic not near genes chr3R_4_12720001 chr3R_12720001 RAL-129 823 chr3R 12725967 12725971 chr3R 12726050 12726076 5 101 1.5 1.0 1.2 2.3 109 chr3R 12725967 intergenic not near genes chr3R 12726022 intergenic not near genes chr3R 12726076 intergenic not near genes chr3R_5_12725001 chr3R_12725001 RAL-129 824 chr3R 12763122 12763144 chr3R 12763199 12763218 5 76 0.0 2.0 1.0 2.5 96 chr3R 12763122 intron beat-Vc - chr3R 12763170 intron beat-Vc - chr3R 12763218 intron beat-Vc - chr3R_5_12760001 chr3R_12760001 RAL-129 825 chr3R 12920153 12920177 chr3R 12925356 12925379 copia 7 5203 1.5 1.0 1.2 3.2 5226 chr3R 12920153 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925379 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-129 826 chr3R 12947291 12947320 chr3R 12947453 12947480 6 154 1.0 0.5 0.8 3.3 189 chr3R 12947291 intergenic not near genes chr3R 12947386 intergenic not near genes chr3R 12947480 intergenic not near genes chr3R_6_12945001 chr3R_12945001 RAL-129 827 chr3R 12972557 12972582 chr3R 12972696 12972721 6 139 0.5 2.0 1.2 2.7 164 chr3R 12972557 intron CG7381 - chr3R 12972639 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-129 828 chr3R 13059962 13059972 chr3R 13060157 13060166 4 195 1.5 1.5 1.5 1.6 204 chr3R 13059962 intron sim + chr3R 13060064 intron sim + chr3R 13060166 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-129 829 chr3R 13067835 13067871 chr3R 13067915 13067951 4 77 2.5 3.0 2.8 1.1 116 chr3R 13067835 intron sim + chr3R 13067893 intron sim + chr3R 13067951 intron sim + chr3R_4_13065001 chr3R_13065001 RAL-129 830 chr3R 13075360 13075389 chr3R 13075441 13075470 4 78 1.0 1.0 1.0 2.0 110 chr3R 13075360 intron sim + chr3R 13075415 intron sim + chr3R 13075470 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-129 831 chr3R 13138324 13138348 chr3R 13138412 13138415 7 82 1.0 0.0 0.5 4.7 91 chr3R 13138324 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138370 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138415 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-129 832 chr3R 13143054 13143064 chr3R 13148629 13148637 mdg3 5 5573 3.0 4.5 3.8 1.0 5583 chr3R 13143054 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145846 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148637 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-129 833 chr3R 7773344 7773344 chr3R 13217322 13217322 4 5443978 3.5 9.5 6.5 0.5 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_4_10495001 chr3R_10495001 RAL-129 834 chr3R 13349003 13349029 chr3R 13349079 13349104 4 72 0.5 0.5 0.5 2.7 101 chr3R 13349003 intergenic not near genes chr3R 13349054 intergenic not near genes chr3R 13349104 intergenic not near genes chr3R_4_13345001 chr3R_13345001 RAL-129 835 chr3R 13435390 13435414 chr3R 13435564 13435587 4 174 1.5 2.0 1.8 1.4 197 chr3R 13435390 intergenic yrt - chr3R 13435488 intergenic not near genes chr3R 13435587 intergenic not near genes chr3R_4_13435001 chr3R_13435001 RAL-129 836 chr3R 13603068 13603366 chr3R 13603159 13603456 7 90 0.0 1.5 0.8 3.9 388 chr3R 13603068 intergenic not near genes chr3R 13603262 intergenic not near genes chr3R 13603456 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-129 837 chr3R 13604066 13604090 chr3R 13604299 13604324 4 234 1.5 2.0 1.8 1.4 258 chr3R 13604066 intergenic not near genes chr3R 13604195 intergenic not near genes chr3R 13604324 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-129 838 chr3R 13693028 13693029 chr3R 21907534 21907534 10 8214507 5.0 10.5 7.8 1.1 8214506 chr3R 13693028 3` UTR flfl + chr3R 17800281 exon CG17803 - chr3R 21907534 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-129 839 chr3R 13749228 13749248 chr3R 13749304 13749306 5 73 1.0 3.0 2.0 1.7 78 chr3R 13749228 intron CG34383 + chr3R 13749267 intron CG34383 + chr3R 13749306 intron CG34383 + chr3R_5_13745001 chr3R_13745001 RAL-129 840 chr3R 13918197 13918212 chr3R 13918285 13918300 4 88 2.0 0.5 1.2 1.8 103 chr3R 13918197 intergenic not near genes chr3R 13918248 intergenic not near genes chr3R 13918300 intergenic not near genes chr3R_4_13915001 chr3R_13915001 RAL-129 841 chr3R 14021649 14021672 chr3R 14023465 14023489 S-element 4 1816 1.0 2.0 1.5 1.6 1840 chr3R 14021649 intron rdx - chr3R 14022569 intron rdx - chr3R 14023489 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-129 842 chr3R 14194429 14194459 chr3R 14203578 14203608 roo 5 9149 1.5 4.0 2.8 1.3 9179 chr3R 14194429 intron Dop1R1 - chr3R 14199018 intron Dop1R1 - chr3R 14203608 intron Dop1R1 - chr3R_5_14195001 chr3R_14195001 RAL-129 843 chr3R 14292888 14292900 chr3R 14293002 14293014 4 112 1.5 3.5 2.5 1.1 126 chr3R 14292888 intron CG12207 + chr3R 14292951 intron CG12207 + chr3R 14293014 intron CG12207 + chr3R_4_14290001 chr3R_14290001 RAL-129 844 chr3R 14520443 14520471 chr3R 14520537 14520571 7 98 0.5 0.5 0.5 4.7 128 chr3R 14520443 intron Pde6 - chr3R 14520507 intron Pde6 - chr3R 14520571 intron Pde6 - chr3R_7_14520001 chr3R_14520001 RAL-129 845 chr3R 14549037 14549049 chr3R 14549124 14549136 6 87 4.5 1.5 3.0 1.5 99 chr3R 14549037 intron Pde6 - chr3R 14549086 intron Pde6 - chr3R 14549136 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-129 846 chr3R 14639512 14639528 chr3R 14639588 14639604 6 76 1.5 2.5 2.0 2.0 92 chr3R 14639512 intron,exon CG7886 -,Cad88C + chr3R 14639558 intron,intron CG7886 -,Cad88C + chr3R 14639604 intron,intron CG7886 -,Cad88C + chr3R_6_14635001 chr3R_14635001 RAL-129 847 chr3R 14686240 14686263 chr3R 14686620 14686633 4 378 2.5 3.5 3.0 1.0 393 chr3R 14686240 intron Meltrin - chr3R 14686436 intron Meltrin - chr3R 14686633 intron Meltrin - chr3R_4_14685001 chr3R_14685001 RAL-129 848 chr3R 14704382 14704416 chr3R 14704459 14704493 7 77 1.0 2.5 1.8 2.5 111 chr3R 14704382 intron kibra - chr3R 14704438 intron kibra - chr3R 14704493 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-129 849 chr3R 14821618 14821639 chr3R 14821766 14821787 4 148 3.5 1.0 2.2 1.2 169 chr3R 14821618 intron btsz - chr3R 14821702 intron btsz - chr3R 14821787 intron btsz - chr3R_4_14820001 chr3R_14820001 RAL-129 850 chr3R 14842566 14842594 chr3R 14842649 14842657 5 76 4.0 1.5 2.8 1.3 91 chr3R 14842566 intron btsz - chr3R 14842612 intron btsz - chr3R 14842657 intron btsz - chr3R_5_14840001 chr3R_14840001 RAL-129 851 chr3R 14882520 14882555 chr3R 14882608 14882643 7 88 0.0 1.0 0.5 4.7 123 chr3R 14882520 3` UTR,3` UTR CG3631 +,Rrp6 - chr3R 14882582 3` UTR,3` UTR CG3631 +,Rrp6 - chr3R 14882643 3` UTR Rrp6 - chr3R_7_14880001 chr3R_14880001 RAL-129 852 chr3R 14912543 14912564 chr3R 14912626 14912638 6 82 0.5 2.5 1.5 2.4 95 chr3R 14912543 intergenic not near genes chr3R 14912590 intergenic not near genes chr3R 14912638 intergenic not near genes chr3R_6_14910001 chr3R_14910001 RAL-129 853 chr3R 15059301 15059480 chr3R 15059472 15059567 BS 5 120 0.0 0.0 0.0 5.0 266 chr3R 15059301 intron dpr9 - chr3R 15059434 intron dpr9 - chr3R 15059567 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-129 854 chr3R 15132060 15132069 chr3R 15135115 15135129 Juan 4 3058 2.5 1.0 1.8 1.4 3069 chr3R 15132060 intergenic CG42788 - chr3R 15133594 intergenic not near genes chr3R 15135129 intergenic CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-129 855 chr3R 15286987 15286988 chr3R 21907534 21907536 15 6620547 11.0 10.5 10.8 1.3 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_15_18595001 chr3R_18595001 RAL-129 856 chr3R 15408159 15408179 chr3R 15408234 15408251 6 81 0.5 2.0 1.2 2.7 92 chr3R 15408159 intergenic not near genes chr3R 15408205 intergenic not near genes chr3R 15408251 intergenic not near genes chr3R_6_15405001 chr3R_15405001 RAL-129 857 chr3R 15416247 15416279 chr3R 15416327 15416359 9 77 2.0 3.5 2.8 2.4 112 chr3R 15416247 3` UTR Atx2 + chr3R 15416303 3` UTR Atx2 + chr3R 15416359 3` UTR Atx2 + chr3R_9_15415001 chr3R_15415001 RAL-129 858 chr3R 15571242 15571496 chr3R 15571349 15571587 14 96 1.0 1.5 1.2 6.4 345 chr3R 15571242 intergenic not near genes chr3R 15571414 intergenic not near genes chr3R 15571587 intergenic not near genes chr3R_14_15570001 chr3R_15570001 RAL-129 859 chr3R 15601164 15601192 chr3R 15608685 15608714 412 4 7521 1.5 2.5 2.0 1.3 7550 chr3R 15601164 intergenic not near genes chr3R 15604939 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-129 860 chr3R 15691188 15691331 chr3R 15691292 15691418 4 91 0.5 0.5 0.5 2.7 230 chr3R 15691188 intergenic not near genes chr3R 15691303 intergenic not near genes chr3R 15691418 intergenic not near genes chr3R_4_15690001 chr3R_15690001 RAL-129 861 chr3R 15709641 15709668 chr3R 15709763 15709796 4 126 1.0 1.0 1.0 2.0 155 chr3R 15709641 intergenic not near genes chr3R 15709718 intergenic not near genes chr3R 15709796 intergenic not near genes chr3R_4_15705001 chr3R_15705001 RAL-129 862 chr3R 15778739 15778760 chr3R 15778833 15778868 5 106 1.5 1.0 1.2 2.3 129 chr3R 15778739 intergenic not near genes chr3R 15778804 intergenic not near genes chr3R 15778868 intergenic not near genes chr3R_5_15775001 chr3R_15775001 RAL-129 863 chr3R 16023871 16023885 chr3R 16023947 16023962 4 76 0.5 2.0 1.2 1.8 91 chr3R 16023871 intergenic not near genes chr3R 16023916 intergenic not near genes chr3R 16023962 intergenic not near genes chr3R_4_16020001 chr3R_16020001 RAL-129 864 chr3R 16472579 16472599 chr3R 16472655 16472673 6 75 3.0 2.5 2.8 1.6 94 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472673 5` UTR Gyc-89Da + chr3R_6_16470001 chr3R_16470001 RAL-129 865 chr3R 16491932 16491963 chr3R 16500671 16500700 5 8737 15.5 19.5 17.5 0.3 8768 chr3R 16491932 exon Cad89D - chr3R 16496316 intergenic not near genes chr3R 16500700 exon decay - chr3R_5_16495001 chr3R_16495001 RAL-129 866 chr3R 16756333 16756342 chr3R 16762524 16762533 diver 6 6190 1.0 1.5 1.2 2.7 6200 chr3R 16756333 intron bxd - chr3R 16759433 intron bxd - chr3R 16762533 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-129 867 chr3R 17178261 17178274 chr3R 17178399 17178412 6 138 1.5 3.0 2.2 1.9 151 chr3R 17178261 intron Mur89F - chr3R 17178336 intron Mur89F - chr3R 17178412 intron Mur89F - chr3R_6_17175001 chr3R_17175001 RAL-129 868 chr3R 17407006 17407027 chr3R 17407108 17407122 4 100 1.0 1.5 1.2 1.8 116 chr3R 17407006 intron CG42798 + chr3R 17407064 5` UTR CG42798 + chr3R 17407122 exon CG42798 + chr3R_4_17405001 chr3R_17405001 RAL-129 869 chr3R 17461201 17461223 chr3R 17461283 17461305 4 82 1.0 0.0 0.5 2.7 104 chr3R 17461201 intergenic not near genes chr3R 17461253 intergenic not near genes chr3R 17461305 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-129 870 chr3R 17507448 17507477 chr3R 17507526 17507555 4 78 1.0 0.5 0.8 2.2 107 chr3R 17507448 intergenic not near genes chr3R 17507502 intergenic not near genes chr3R 17507555 intergenic not near genes chr3R_4_17505001 chr3R_17505001 RAL-129 871 chr3R 17562230 17562263 chr3R 17562398 17562434 9 170 2.0 1.5 1.8 3.2 204 chr3R 17562230 intron Hmx + chr3R 17562332 intron Hmx + chr3R 17562434 intron Hmx + chr3R_9_17560001 chr3R_17560001 RAL-129 872 chr3R 17845208 17845216 chr3R 17845284 17845292 4 75 1.5 1.5 1.5 1.6 84 chr3R 17845208 intron tinc + chr3R 17845250 intron tinc + chr3R 17845292 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-129 873 chr3R 17925873 17925889 chr3R 17927323 17927356 hobo 4 1460 2.0 3.5 2.8 1.1 1483 chr3R 17925873 intron cpo + chr3R 17926614 intron cpo + chr3R 17927356 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-129 874 chr3R 18235229 18235245 chr3R 18235391 18235420 7 168 0.5 1.0 0.8 3.9 191 chr3R 18235229 intergenic not near genes chr3R 18235324 intergenic not near genes chr3R 18235420 intergenic not near genes chr3R_7_18235001 chr3R_18235001 RAL-129 875 chr3R 18275538 18275565 chr3R 18275636 18275651 6 93 0.0 1.5 0.8 3.3 113 chr3R 18275538 intron eIF-1A + chr3R 18275594 intron eIF-1A + chr3R 18275651 intron eIF-1A + chr3R_6_18275001 chr3R_18275001 RAL-129 876 chr3R 18276110 18276137 chr3R 18276189 18276216 5 79 3.0 1.5 2.2 1.6 106 chr3R 18276110 intron eIF-1A + chr3R 18276163 intron eIF-1A + chr3R 18276216 intron eIF-1A + chr3R_5_18275001 chr3R_18275001 RAL-129 877 chr3R 18697559 18697584 chr3R 18697637 18697662 6 77 1.5 4.0 2.8 1.6 103 chr3R 18697559 intergenic not near genes chr3R 18697610 intergenic not near genes chr3R 18697662 intergenic not near genes chr3R_6_18695001 chr3R_18695001 RAL-129 878 chr3R 18703288 18703313 chr3R 18703396 18703421 6 107 0.0 0.0 0.0 6.0 133 chr3R 18703288 intergenic not near genes chr3R 18703354 intergenic not near genes chr3R 18703421 intergenic not near genes chr3R_6_18700001 chr3R_18700001 RAL-129 879 chr3R 18785874 18785899 chr3R 18785951 18785976 4 74 1.5 1.0 1.2 1.8 102 chr3R 18785874 intron CG7720 - chr3R 18785925 intron CG7720 - chr3R 18785976 intron CG7720 - chr3R_4_18785001 chr3R_18785001 RAL-129 880 chr3R 19140262 19140301 chr3R 19140710 19140748 10 445 2.5 0.0 1.2 4.5 486 chr3R 19140262 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140748 3` UTR Ppcs - chr3R_10_19140001 chr3R_19140001 RAL-129 881 chr3R 19344666 19344690 chr3R 19344801 19344825 7 134 3.0 2.0 2.5 2.0 159 chr3R 19344666 intergenic not near genes chr3R 19344746 intergenic not near genes chr3R 19344825 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-129 882 chr3R 19581642 19581662 chr3R 19581722 19581742 5 79 1.0 0.0 0.5 3.3 100 chr3R 19581642 intron Dys + chr3R 19581692 intron Dys + chr3R 19581742 intron Dys + chr3R_5_19580001 chr3R_19580001 RAL-129 883 chr3R 19702339 19702349 chr3R 19702421 19702426 6 81 4.5 4.0 4.2 1.2 87 chr3R 19702339 intergenic not near genes chr3R 19702382 intergenic not near genes chr3R 19702426 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-129 884 chr3R 19783187 19783210 chr3R 19783274 19783298 5 88 0.5 1.0 0.8 2.8 111 chr3R 19783187 intergenic CG11407 +,CG11453 + chr3R 19783242 intergenic CG11407 +,CG11453 + chr3R 19783298 intergenic CG11407 +,CG11453 + chr3R_5_19780001 chr3R_19780001 RAL-129 885 chr3R 19989842 19989881 chr3R 19989922 19989930 5 60 3.5 3.0 3.2 1.2 88 chr3R 19989842 intron Hs6st - chr3R 19989886 intron Hs6st - chr3R 19989930 intron Hs6st - chr3R_5_19985001 chr3R_19985001 RAL-129 886 chr3R 20077039 20077071 chr3R 20077125 20077156 7 83 0.5 0.5 0.5 4.7 117 chr3R 20077039 intergenic not near genes chr3R 20077098 intergenic not near genes chr3R 20077156 intergenic not near genes chr3R_7_20075001 chr3R_20075001 RAL-129 887 chr3R 20109539 20109567 chr3R 20114745 20114773 copia 4 5200 1.0 0.5 0.8 2.2 5234 chr3R 20109539 intergenic not near genes chr3R 20112156 intergenic not near genes chr3R 20114773 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-129 888 chr3R 20156709 20156716 chr3R 20165869 20165886 roo 4 9167 2.5 1.5 2.0 1.3 9177 chr3R 20156709 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165886 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-129 889 chr3R 20205565 20205590 chr3R 20205687 20205712 5 122 2.0 2.0 2.0 1.7 147 chr3R 20205565 intron Nlg4 + chr3R 20205638 intron Nlg4 + chr3R 20205712 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-129 890 chr3R 20209799 20209829 chr3R 20209885 20209915 6 86 0.5 0.0 0.2 5.0 116 chr3R 20209799 intron Nlg4 + chr3R 20209857 intron Nlg4 + chr3R 20209915 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-129 891 chr3R 20245284 20245304 chr3R 20248894 20248914 F-element 5 3609 3.5 1.5 2.5 1.4 3630 chr3R 20245284 3` UTR Nlg4 + chr3R 20247099 intergenic not near genes chr3R 20248914 intergenic not near genes chr3R_5_20245001 chr3R_20245001 RAL-129 892 chr3R 20282276 20282308 chr3R 20282352 20282384 6 76 0.5 2.0 1.2 2.7 108 chr3R 20282276 intron cic + chr3R 20282330 intron cic + chr3R 20282384 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-129 893 chr3R 20330996 20331027 chr3R 20331482 20331512 roo 7 485 0.5 3.0 1.8 2.5 516 chr3R 20330996 intergenic Sirt2 + chr3R 20331254 intergenic Sirt2 + chr3R 20331512 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-129 894 chr3R 20703488 20703508 chr3R 20703880 20703902 6 393 0.5 1.0 0.8 3.3 414 chr3R 20703488 intron Oamb - chr3R 20703695 intron Oamb - chr3R 20703902 intron Oamb - chr3R_6_20700001 chr3R_20700001 RAL-129 895 chr3R 20787445 20787454 chr3R 20787536 20787545 5 91 2.5 1.5 2.0 1.7 100 chr3R 20787445 intron Syp + chr3R 20787495 intron Syp + chr3R 20787545 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-129 896 chr3R 20850087 20850113 chr3R 20850172 20850198 4 85 0.5 0.5 0.5 2.7 111 chr3R 20850087 intergenic RpS30 + chr3R 20850142 intergenic RpS30 + chr3R 20850198 intergenic RpS30 + chr3R_4_20850001 chr3R_20850001 RAL-129 897 chr3R 21014013 21014038 chr3R 21014089 21014116 6 77 1.0 2.0 1.5 2.4 103 chr3R 21014013 3` UTR Calx + chr3R 21014064 3` UTR Calx + chr3R 21014116 3` UTR Calx + chr3R_6_21010001 chr3R_21010001 RAL-129 898 chr3R 21139926 21139951 chr3R 21140043 21140072 6 117 1.5 4.0 2.8 1.6 146 chr3R 21139926 exon meigo + chr3R 21139999 exon meigo + chr3R 21140072 3` UTR meigo + chr3R_6_21135001 chr3R_21135001 RAL-129 899 chr3R 21141693 21141707 chr3R 21150153 21150188 Tirant 4 8471 3.0 3.0 3.0 1.0 8495 chr3R 21141693 intron SNF4Agamma + chr3R 21145940 intron SNF4Agamma + chr3R 21150188 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-129 900 chr3R 21159123 21159127 chr3R 21159226 21159230 5 103 1.5 1.0 1.2 2.3 107 chr3R 21159123 intron SNF4Agamma + chr3R 21159176 intron SNF4Agamma + chr3R 21159230 intron SNF4Agamma + chr3R_5_21155001 chr3R_21155001 RAL-129 901 chr3R 21189332 21189344 chr3R 21189436 21189450 4 106 2.5 0.0 1.2 1.8 118 chr3R 21189332 intron SNF4Agamma + chr3R 21189391 intron SNF4Agamma + chr3R 21189450 intron SNF4Agamma + chr3R_4_21185001 chr3R_21185001 RAL-129 902 chr3R 21385702 21385959 chr3R 21385775 21386035 5 77 0.5 0.0 0.2 4.2 333 chr3R 21385702 intergenic not near genes chr3R 21385868 intergenic not near genes chr3R 21386035 intergenic not near genes chr3R_5_21385001 chr3R_21385001 RAL-129 903 chr3R 21464403 21464423 chr3R 21464489 21464509 4 86 1.5 0.0 0.8 2.2 106 chr3R 21464403 intergenic not near genes chr3R 21464456 intergenic not near genes chr3R 21464509 intergenic not near genes chr3R_4_21460001 chr3R_21460001 RAL-129 904 chr3R 21472019 21472031 chr3R 21472100 21472112 4 81 3.0 3.0 3.0 1.0 93 chr3R 21472019 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-129 905 chr3R 21540233 21540261 chr3R 21540438 21540465 7 203 0.0 1.0 0.5 4.7 232 chr3R 21540233 intergenic not near genes chr3R 21540349 intergenic not near genes chr3R 21540465 intergenic not near genes chr3R_7_21540001 chr3R_21540001 RAL-129 906 chr3R 21800490 21800512 chr3R 21800575 21800597 7 85 3.0 1.5 2.2 2.2 107 chr3R 21800490 intron CASK - chr3R 21800544 intron CASK - chr3R 21800597 intron CASK - chr3R_7_21800001 chr3R_21800001 RAL-129 907 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 3.0 10.5 6.8 0.5 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-129 908 chr3R 21907534 21907534 chr3R 28831799 28831802 25 6924267 14.5 15.0 14.8 1.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_25_25365001 chr3R_25365001 RAL-129 909 chr3R 8339247 8339247 chr3R 21907535 21907535 4 13568288 9.5 10.5 10.0 0.4 13568288 chr3R 8339247 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-129 910 chr3R 21907535 21907535 chr3R 28831798 28831804 40 6924267 14.0 15.0 14.5 2.6 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_40_25365001 chr3R_25365001 RAL-129 911 chr3R 21907536 21907536 chr3R 28831801 28831802 20 6924266 14.0 15.0 14.5 1.3 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-129 912 chr3R 22040138 22040158 chr3R 22040315 22040335 6 177 2.0 2.5 2.2 1.9 197 chr3R 22040138 intergenic not near genes chr3R 22040236 intergenic not near genes chr3R 22040335 intergenic not near genes chr3R_6_22040001 chr3R_22040001 RAL-129 913 chr3R 22055573 22055586 chr3R 22055762 22055775 4 189 1.0 2.0 1.5 1.6 202 chr3R 22055573 intron how + chr3R 22055674 intron how + chr3R 22055775 intron how + chr3R_4_22055001 chr3R_22055001 RAL-129 914 chr3R 22428592 22428606 chr3R 22428655 22428682 4 72 1.5 1.5 1.5 1.6 90 chr3R 22428592 intron CG13847 - chr3R 22428637 intron CG13847 - chr3R 22428682 intron CG13847 - chr3R_4_22425001 chr3R_22425001 RAL-129 915 chr3R 22450541 22450573 chr3R 22453181 22453210 NOF 9 2635 1.0 2.0 1.5 3.6 2669 chr3R 22450541 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453210 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-129 916 chr3R 22522439 22522450 chr3R 22522521 22522533 7 82 3.5 3.5 3.5 1.6 94 chr3R 22522439 intron CG5346 - chr3R 22522486 intron CG5346 - chr3R 22522533 intron CG5346 - chr3R_7_22520001 chr3R_22520001 RAL-129 917 chr3R 22538444 22538474 chr3R 22538529 22538559 5 85 1.5 2.0 1.8 1.8 115 chr3R 22538444 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-129 918 chr3R 22580657 22580674 chr3R 22580725 22580748 9 74 0.0 1.5 0.8 5.0 91 chr3R 22580657 intergenic CSN6 +,CG33110 + chr3R 22580702 intergenic CSN6 +,CG33110 + chr3R 22580748 intergenic CSN6 +,CG33110 + chr3R_9_22580001 chr3R_22580001 RAL-129 919 chr3R 22591671 22591691 chr3R 22591751 22591770 6 80 1.0 0.5 0.8 3.3 99 chr3R 22591671 intron Efa6 + chr3R 22591720 intron Efa6 + chr3R 22591770 intron Efa6 + chr3R_6_22590001 chr3R_22590001 RAL-129 920 chr3R 22663401 22663438 chr3R 22663558 22663597 12 156 0.5 3.0 1.8 4.3 196 chr3R 22663401 intron wake + chr3R 22663499 intron wake + chr3R 22663597 intron wake + chr3R_12_22660001 chr3R_22660001 RAL-129 921 chr3R 22797761 22797937 chr3R 22797847 22798033 11 94 0.0 0.0 0.0 11.0 272 chr3R 22797761 intergenic not near genes chr3R 22797897 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_11_22795001 chr3R_22795001 RAL-129 922 chr3R 22926805 22926828 chr3R 22926892 22926915 4 88 2.5 2.0 2.2 1.2 110 chr3R 22926805 intron klg + chr3R 22926860 intron klg + chr3R 22926915 intron klg + chr3R_4_22925001 chr3R_22925001 RAL-129 923 chr3R 22974285 22974306 chr3R 22974369 22974382 4 82 1.5 0.5 1.0 2.0 97 chr3R 22974285 intergenic not near genes chr3R 22974334 intergenic not near genes chr3R 22974382 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-129 924 chr3R 23064179 23064200 chr3R 23064288 23064309 13 109 2.0 1.0 1.5 5.2 130 chr3R 23064179 exon CG17111 - chr3R 23064244 intron CG17111 - chr3R 23064309 exon CG17111 - chr3R_13_23060001 chr3R_23060001 RAL-129 925 chr3R 23064874 23064896 chr3R 23064963 23064987 9 91 0.0 2.0 1.0 4.5 113 chr3R 23064874 intron CG17111 - chr3R 23064930 intron CG17111 - chr3R 23064987 intron CG17111 - chr3R_9_23060001 chr3R_23060001 RAL-129 926 chr3R 23073676 23073687 chr3R 23073760 23073772 4 87 3.0 3.5 3.2 1.0 96 chr3R 23073676 intron CG13830 - chr3R 23073724 intron CG13830 - chr3R 23073772 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-129 927 chr3R 23091269 23091280 chr3R 23091342 23091364 4 82 2.5 0.5 1.5 1.6 95 chr3R 23091269 intron CG13830 - chr3R 23091316 intron CG13830 - chr3R 23091364 intron CG13830 - chr3R_4_23090001 chr3R_23090001 RAL-129 928 chr3R 23114168 23114200 chr3R 23114246 23114278 6 78 0.5 1.0 0.8 3.3 110 chr3R 23114168 3` UTR Rassf - chr3R 23114223 3` UTR Rassf - chr3R 23114278 3` UTR Rassf - chr3R_6_23110001 chr3R_23110001 RAL-129 929 chr3R 23360194 23360203 chr3R 23360270 23360279 4 76 0.0 2.5 1.2 1.8 85 chr3R 23360194 3` UTR RpS3 + chr3R 23360236 intergenic RpS3 + chr3R 23360279 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-129 930 chr3R 23558402 23558427 chr3R 23560183 23560208 Bari1 5 1781 1.0 2.0 1.5 2.0 1806 chr3R 23558402 intron beat-IV + chr3R 23559305 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-129 931 chr3R 23582816 23582823 chr3R 23582894 23582906 4 80 1.0 1.5 1.2 1.8 90 chr3R 23582816 intergenic not near genes chr3R 23582861 intergenic not near genes chr3R 23582906 intergenic not near genes chr3R_4_23580001 chr3R_23580001 RAL-129 932 chr3R 23626328 23626354 chr3R 23626424 23626453 4 90 2.5 4.0 3.2 1.0 125 chr3R 23626328 intron CG31145 - chr3R 23626390 intron CG31145 - chr3R 23626453 intron CG31145 - chr3R_4_23625001 chr3R_23625001 RAL-129 933 chr3R 23639941 23639961 chr3R 23640247 23640267 4 302 1.5 3.5 2.5 1.1 326 chr3R 23639941 intron CG31145 - chr3R 23640104 intron CG31145 - chr3R 23640267 intron CG31145 - chr3R_4_23640001 chr3R_23640001 RAL-129 934 chr3R 23688487 23688504 chr3R 23688578 23688590 4 88 1.0 2.5 1.8 1.4 103 chr3R 23688487 intergenic SPE + chr3R 23688538 intergenic SPE +,CG10254 - chr3R 23688590 intergenic CG10254 -,SPE + chr3R_4_23685001 chr3R_23685001 RAL-129 935 chr3R 23809836 23809872 chr3R 23809913 23809949 6 77 0.5 0.5 0.5 4.0 113 chr3R 23809836 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23809892 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R 23809949 intron,intron,3` UTR CG33111 -,CG34355 +,eIF4G2 - chr3R_6_23805001 chr3R_23805001 RAL-129 936 chr3R 23949040 23949067 chr3R 23949117 23949144 7 77 2.0 0.5 1.2 3.2 104 chr3R 23949040 intergenic not near genes chr3R 23949092 intergenic not near genes chr3R 23949144 intergenic not near genes chr3R_7_23945001 chr3R_23945001 RAL-129 937 chr3R 24100458 24100608 chr3R 24100553 24100832 7 182 1.0 1.0 1.0 3.5 374 chr3R 24100458 intron 4EHP - chr3R 24100645 intron 4EHP - chr3R 24100832 intron 4EHP - chr3R_7_24100001 chr3R_24100001 RAL-129 938 chr3R 24161696 24161716 chr3R 24161789 24161807 5 92 2.5 2.5 2.5 1.4 111 chr3R 24161696 intergenic CG6182 +,Myo95E - chr3R 24161752 5` UTR CG6182 + chr3R 24161807 exon CG6182 + chr3R_5_24160001 chr3R_24160001 RAL-129 939 chr3R 24207215 24207238 chr3R 24212291 24212302 flea 4 5073 5.5 3.5 4.5 0.7 5087 chr3R 24207215 intron twin - chr3R 24209758 intron twin - chr3R 24212302 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-129 940 chr3R 24434240 24434268 chr3R 24434318 24434346 5 77 1.5 3.0 2.2 1.6 106 chr3R 24434240 intron nAChRalpha1 - chr3R 24434293 intron nAChRalpha1 - chr3R 24434346 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-129 941 chr3R 24493293 24493307 chr3R 24493520 24493536 BS 5 229 1.0 1.0 1.0 2.5 243 chr3R 24493293 intergenic not near genes chr3R 24493414 intergenic not near genes chr3R 24493536 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-129 942 chr3R 24527807 24527826 chr3R 24527898 24527917 4 91 1.5 1.0 1.2 1.8 110 chr3R 24527807 intergenic CG6607 +,CG13618 + chr3R 24527862 intergenic CG6607 +,CG13618 + chr3R 24527917 intergenic CG6607 +,CG13618 + chr3R_4_24525001 chr3R_24525001 RAL-129 943 chr3R 24730093 24730119 chr3R 24732471 24732490 Doc 4 2376 3.5 0.0 1.8 1.4 2397 chr3R 24730093 intron tok + chr3R 24731292 intron tok + chr3R 24732490 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-129 944 chr3R 24842112 24842135 chr3R 24842189 24842221 5 83 1.0 5.0 3.0 1.2 109 chr3R 24842112 5` UTR Esp + chr3R 24842166 5` UTR Esp + chr3R 24842221 5` UTR Esp + chr3R_5_24840001 chr3R_24840001 RAL-129 945 chr3R 24927121 24927152 chr3R 24931912 24931943 Doc 4 4791 2.0 1.0 1.5 1.6 4822 chr3R 24927121 intergenic Trf4-2 + chr3R 24929532 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-129 946 chr3R 24973954 24973986 chr3R 24974022 24974061 9 72 1.5 1.5 1.5 3.6 107 chr3R 24973954 intergenic not near genes chr3R 24974008 intergenic not near genes chr3R 24974061 intergenic not near genes chr3R_9_24970001 chr3R_24970001 RAL-129 947 chr3R 24974919 24974934 chr3R 24974998 24974999 5 76 2.5 3.5 3.0 1.2 80 chr3R 24974919 intergenic not near genes chr3R 24974959 intergenic not near genes chr3R 24974999 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-129 948 chr3R 25004906 25004929 chr3R 25004988 25005011 5 82 3.0 2.5 2.8 1.3 105 chr3R 25004906 intron tnc + chr3R 25004958 intron tnc + chr3R 25005011 intron tnc + chr3R_5_25000001 chr3R_25000001 RAL-129 949 chr3R 25018264 25018292 chr3R 25018332 25018357 4 70 2.5 2.0 2.2 1.2 93 chr3R 25018264 exon tnc + chr3R 25018310 exon tnc + chr3R 25018357 exon tnc + chr3R_4_25015001 chr3R_25015001 RAL-129 950 chr3R 25027540 25027567 chr3R 25027752 25027780 6 212 1.0 0.0 0.5 4.0 240 chr3R 25027540 intron Hr96 + chr3R 25027660 intron Hr96 + chr3R 25027780 intron Hr96 + chr3R_6_25025001 chr3R_25025001 RAL-129 951 chr3R 25081902 25081926 chr3R 25081993 25082014 4 85 2.0 1.0 1.5 1.6 112 chr3R 25081902 intergenic not near genes chr3R 25081958 intergenic not near genes chr3R 25082014 intergenic not near genes chr3R_4_25080001 chr3R_25080001 RAL-129 952 chr3R 25159506 25159531 chr3R 25159594 25159612 9 84 0.5 2.0 1.2 4.1 106 chr3R 25159506 intergenic not near genes chr3R 25159559 intergenic not near genes chr3R 25159612 intergenic not near genes chr3R_9_25155001 chr3R_25155001 RAL-129 953 chr3R 25396981 25397001 chr3R 25397067 25397074 5 85 1.0 2.0 1.5 2.0 93 chr3R 25396981 exon Fur1 - chr3R 25397028 exon Fur1 - chr3R 25397074 exon Fur1 - chr3R_5_25395001 chr3R_25395001 RAL-129 954 chr3R 25612909 25612934 chr3R 25612986 25613011 6 77 1.5 0.5 1.0 3.0 102 chr3R 25612909 intron Npl4 - chr3R 25612960 intron Npl4 - chr3R 25613011 intron Npl4 - chr3R_6_25610001 chr3R_25610001 RAL-129 955 chr3R 25689128 25689159 chr3R 25689236 25689267 6 108 3.0 1.0 2.0 2.0 139 chr3R 25689128 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689267 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-129 956 chr3R 25738636 25738661 chr3R 25738724 25738747 7 86 0.5 2.0 1.2 3.2 111 chr3R 25738636 intron LpR2 - chr3R 25738692 intron LpR2 - chr3R 25738747 intron LpR2 - chr3R_7_25735001 chr3R_25735001 RAL-129 957 chr3R 25843642 25843662 chr3R 25843772 25843791 6 130 1.5 1.5 1.5 2.4 149 chr3R 25843642 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843791 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-129 958 chr3R 25982081 25982097 chr3R 25982169 25982185 4 88 2.0 0.5 1.2 1.8 104 chr3R 25982081 3` UTR CG42261 + chr3R 25982133 3` UTR CG42261 + chr3R 25982185 3` UTR CG42261 + chr3R_4_25980001 chr3R_25980001 RAL-129 959 chr3R 25983698 25983721 chr3R 25983796 25983819 9 96 5.0 2.5 3.8 1.9 121 chr3R 25983698 exon Nf1 + chr3R 25983758 intron Nf1 + chr3R 25983819 intron Nf1 + chr3R_9_25980001 chr3R_25980001 RAL-129 960 chr3R 26010172 26010209 chr3R 26010249 26010285 10 74 2.5 2.0 2.2 3.1 113 chr3R 26010172 intergenic not near genes chr3R 26010228 intergenic not near genes chr3R 26010285 intergenic not near genes chr3R_10_26010001 chr3R_26010001 RAL-129 961 chr3R 26126550 26126570 chr3R 26126636 26126656 6 86 1.5 3.0 2.2 1.9 106 chr3R 26126550 intron CG31324 + chr3R 26126603 intron CG31324 + chr3R 26126656 intron CG31324 + chr3R_6_26125001 chr3R_26125001 RAL-129 962 chr3R 26235490 26235519 chr3R 26235572 26235590 6 74 3.0 5.0 4.0 1.2 100 chr3R 26235490 5` UTR CR42745 + chr3R 26235540 5` UTR CR42745 + chr3R 26235590 5` UTR CR42745 + chr3R_6_26235001 chr3R_26235001 RAL-129 963 chr3R 26292114 26292135 chr3R 26292194 26292215 4 80 1.5 3.5 2.5 1.1 101 chr3R 26292114 intergenic not near genes chr3R 26292164 intergenic not near genes chr3R 26292215 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-129 964 chr3R 26334571 26334603 chr3R 26334696 26334728 11 123 3.5 2.5 3.0 2.8 157 chr3R 26334571 intron CG33970 + chr3R 26334650 intron CG33970 + chr3R 26334728 intron CG33970 + chr3R_11_26330001 chr3R_26330001 RAL-129 965 chr3R 26376334 26376358 chr3R 26385494 26385517 roo 5 9159 2.5 0.5 1.5 2.0 9183 chr3R 26376334 intergenic not near genes chr3R 26380926 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-129 966 chr3R 26575013 26575037 chr3R 26575085 26575108 4 75 1.5 0.5 1.0 2.0 95 chr3R 26575013 exon scrib + chr3R 26575060 intron scrib + chr3R 26575108 intron scrib + chr3R_4_26575001 chr3R_26575001 RAL-129 967 chr3R 26652273 26652303 chr3R 26652360 26652390 5 85 0.0 2.5 1.2 2.3 117 chr3R 26652273 intron beat-VII - chr3R 26652332 intron beat-VII - chr3R 26652390 intron beat-VII - chr3R_5_26650001 chr3R_26650001 RAL-129 968 chr3R 26660435 26660453 chr3R 26660514 26660535 5 82 2.5 1.5 2.0 1.7 100 chr3R 26660435 intron beat-VII - chr3R 26660485 intron beat-VII - chr3R 26660535 intron beat-VII - chr3R_5_26660001 chr3R_26660001 RAL-129 969 chr3R 26710830 26710852 chr3R 26710913 26710936 4 84 1.0 2.0 1.5 1.6 106 chr3R 26710830 intron amon - chr3R 26710883 intron amon - chr3R 26710936 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-129 970 chr3R 26715683 26715686 chr3R 26715746 26715775 4 71 3.5 2.5 3.0 1.0 92 chr3R 26715683 3` UTR CG6425 - chr3R 26715729 3` UTR CG6425 - chr3R 26715775 3` UTR CG6425 - chr3R_4_26715001 chr3R_26715001 RAL-129 971 chr3R 26881457 26881486 chr3R 26881537 26881566 8 78 2.0 2.5 2.2 2.5 109 chr3R 26881457 intergenic T48 +,ro - chr3R 26881512 intergenic T48 +,ro - chr3R 26881566 intergenic T48 +,ro - chr3R_8_26880001 chr3R_26880001 RAL-129 972 chr3R 26902694 26902725 chr3R 26903043 26903073 11 346 2.0 2.0 2.0 3.7 379 chr3R 26902694 intron T48 + chr3R 26902884 intron T48 + chr3R 26903073 intron T48 + chr3R_11_26900001 chr3R_26900001 RAL-129 973 chr3R 26983800 26983832 chr3R 26983883 26983914 6 83 0.0 1.5 0.8 3.3 114 chr3R 26983800 intron CG14253 + chr3R 26983857 intron CG14253 + chr3R 26983914 intron CG14253 + chr3R_6_26980001 chr3R_26980001 RAL-129 974 chr3R 27038457 27038468 chr3R 27039517 27039532 4 1062 3.5 3.0 3.2 1.0 1075 chr3R 27038457 intron RYa-R + chr3R 27038994 intron RYa-R + chr3R 27039532 intron RYa-R + chr3R_4_27035001 chr3R_27035001 RAL-129 975 chr3R 27088408 27088414 chr3R 27088474 27088508 5 84 0.0 2.0 1.0 2.5 100 chr3R 27088408 intergenic not near genes chr3R 27088458 intergenic not near genes chr3R 27088508 intergenic not near genes chr3R_5_27085001 chr3R_27085001 RAL-129 976 chr3R 27138057 27138079 chr3R 27139993 27140016 4 1936 0.0 2.0 1.0 2.0 1959 chr3R 27138057 intron CG6051 - chr3R 27139036 intron CG6051 - chr3R 27140016 intron CG6051 - chr3R_4_27135001 chr3R_27135001 RAL-129 977 chr3R 27140519 27140545 chr3R 27148129 27148154 412 12 7609 2.0 3.5 2.8 3.2 7635 chr3R 27140519 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148154 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-129 978 chr3R 27323259 27323292 chr3R 27324001 27324034 9 738 1.0 3.0 2.0 3.0 775 chr3R 27323259 intergenic not near genes chr3R 27323646 intergenic not near genes chr3R 27324034 intergenic not near genes chr3R_9_27320001 chr3R_27320001 RAL-129 979 chr3R 27370117 27370134 chr3R 27370321 27370329 4 202 1.0 2.0 1.5 1.6 212 chr3R 27370117 intron CG42534 + chr3R 27370223 intron CG42534 + chr3R 27370329 intron CG42534 + chr3R_4_27370001 chr3R_27370001 RAL-129 980 chr3R 27443402 27443421 chr3R 27443479 27443498 6 77 2.0 1.5 1.8 2.1 96 chr3R 27443402 intergenic not near genes chr3R 27443450 intergenic not near genes chr3R 27443498 intergenic not near genes chr3R_6_27440001 chr3R_27440001 RAL-129 981 chr3R 27473767 27473794 chr3R 27474020 27474049 13 254 1.5 2.0 1.8 4.6 282 chr3R 27473767 intergenic not near genes chr3R 27473908 intergenic not near genes chr3R 27474049 intergenic not near genes chr3R_13_27470001 chr3R_27470001 RAL-129 982 chr3R 27521160 27521190 chr3R 27530369 27530399 roo 4 9209 0.0 0.5 0.2 3.3 9239 chr3R 27521160 intron CG12885 + chr3R 27525780 intron CG12885 + chr3R 27530399 intron CG12885 + chr3R_4_27525001 chr3R_27525001 RAL-129 983 chr3R 27571579 27571610 chr3R 27571681 27571685 8 94 1.5 2.0 1.8 2.9 106 chr3R 27571579 intron wdb - chr3R 27571632 intron wdb - chr3R 27571685 intron wdb - chr3R_8_27570001 chr3R_27570001 RAL-129 984 chr3R 27765767 27765800 chr3R 27765929 27765963 6 163 3.0 3.0 3.0 1.5 196 chr3R 27765767 intergenic not near genes chr3R 27765865 intergenic not near genes chr3R 27765963 intergenic not near genes chr3R_6_27765001 chr3R_27765001 RAL-129 985 chr3R 27779279 27779286 chr3R 27779356 27779363 4 76 4.0 4.0 4.0 0.8 84 chr3R 27779279 exon CG34353 - chr3R 27779321 intron CG34353 - chr3R 27779363 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-129 986 chr3R 27856759 27856771 chr3R 27858242 27858254 hopper2 4 1483 1.5 1.5 1.5 1.6 1495 chr3R 27856759 intron CG34353 - chr3R 27857506 intron CG34353 - chr3R 27858254 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-129 987 chr3R 27856776 27856793 chr3R 27858240 27858275 hopper2 4 1472 1.0 1.5 1.2 1.8 1499 chr3R 27856776 intron CG34353 - chr3R 27857526 intron CG34353 - chr3R 27858275 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-129 988 chr3R 27861280 27861289 chr3R 27861354 27861365 5 74 1.5 4.0 2.8 1.3 85 chr3R 27861280 intron CG34353 - chr3R 27861322 intron CG34353 - chr3R 27861365 intron CG34353 - chr3R_5_27860001 chr3R_27860001 RAL-129 989 chr3R 27862960 27862987 chr3R 27868261 27868291 Transpac 8 5300 1.0 1.5 1.2 3.6 5331 chr3R 27862960 intron CG34353 - chr3R 27865626 intron CG34353 - chr3R 27868291 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-129 990 chr3R 27875705 27875731 chr3R 27882758 27882786 297 4 7054 0.5 1.0 0.8 2.2 7081 chr3R 27875705 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882786 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-129 991 chr3R 28002911 28002925 chr3R 28002988 28003002 4 77 1.5 2.5 2.0 1.3 91 chr3R 28002911 intergenic not near genes chr3R 28002956 intergenic not near genes chr3R 28003002 intergenic not near genes chr3R_4_28000001 chr3R_28000001 RAL-129 992 chr3R 28017952 28017972 chr3R 28018041 28018063 5 90 2.0 1.0 1.5 2.0 111 chr3R 28017952 intergenic not near genes chr3R 28018008 intergenic not near genes chr3R 28018063 intergenic not near genes chr3R_5_28015001 chr3R_28015001 RAL-129 993 chr3R 28068512 28068528 chr3R 28073954 28073970 I-element 4 5442 3.0 4.5 3.8 0.8 5458 chr3R 28068512 intron CG34362 + chr3R 28071241 intron CG34362 + chr3R 28073970 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-129 994 chr3R 28132492 28132509 chr3R 28132574 28132590 4 79 1.5 1.0 1.2 1.8 98 chr3R 28132492 intergenic not near genes chr3R 28132541 intergenic not near genes chr3R 28132590 intergenic not near genes chr3R_4_28130001 chr3R_28130001 RAL-129 995 chr3R 28173673 28173705 chr3R 28181103 28181134 mdg1 8 7430 1.5 1.5 1.5 3.2 7461 chr3R 28173673 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-129 996 chr3R 28253352 28253372 chr3R 28255862 28255876 jockey 4 2508 3.0 2.0 2.5 1.1 2524 chr3R 28253352 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255876 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-129 997 chr3R 28302103 28302120 chr3R 28302542 28302559 jockey 6 438 2.5 2.5 2.5 1.7 456 chr3R 28302103 intergenic not near genes chr3R 28302331 intergenic not near genes chr3R 28302559 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-129 998 chr3R 28597499 28597516 chr3R 28597572 28597586 7 74 2.5 3.5 3.0 1.8 87 chr3R 28597499 intergenic not near genes chr3R 28597542 intergenic not near genes chr3R 28597586 intergenic Noa36 - chr3R_7_28595001 chr3R_28595001 RAL-129 999 chr3R 28617144 28617174 chr3R 28617303 28617333 5 158 3.0 1.0 2.0 1.7 189 chr3R 28617144 intron CG10011 - chr3R 28617238 intron CG10011 - chr3R 28617333 intron CG10011 - chr3R_5_28615001 chr3R_28615001 RAL-129 1000 chr3R 28736220 28736236 chr3R 28736303 28736307 4 80 0.5 3.0 1.8 1.4 87 chr3R 28736220 intergenic not near genes chr3R 28736264 intergenic not near genes chr3R 28736307 intergenic not near genes chr3R_4_28735001 chr3R_28735001 RAL-129 1001 chr3R 28792872 28792886 chr3R 28797967 28797981 jockey 4 5095 2.5 3.0 2.8 1.1 5109 chr3R 28792872 intergenic not near genes chr3R 28795426 intergenic not near genes chr3R 28797981 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-129 1002 chr3R 21907534 21907536 chr3R 28831798 28831802 57 6924266 14.0 15.0 14.5 3.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_57_25365001 chr3R_25365001 RAL-129 1003 chr3R 28989907 28989932 chr3R 28990081 28990104 8 173 2.0 2.0 2.0 2.7 197 chr3R 28989907 intergenic not near genes chr3R 28990006 intergenic not near genes chr3R 28990104 intergenic not near genes chr3R_8_28990001 chr3R_28990001 RAL-129 1004 chr3R 21907534 21907534 chr3R 29013340 29013340 4 7105806 14.5 11.5 13.0 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-129 1005 chr3R 29032749 29032775 chr3R 29032824 29032832 4 72 2.0 0.5 1.2 1.8 83 chr3R 29032749 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032790 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032832 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-129 1006 chr3R 29237252 29237277 chr3R 29239269 29239282 7 2018 5.0 6.5 5.8 1.0 2030 chr3R 29237252 exon CG11951 - chr3R 29238267 intron CG11951 - chr3R 29239282 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-129 1007 chr3R 29256286 29256300 chr3R 29256361 29256380 4 78 1.5 2.5 2.0 1.3 94 chr3R 29256286 intergenic CG45544 +,stg - chr3R 29256333 intergenic CG45544 + chr3R 29256380 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-129 1008 chr3R 29257391 29257422 chr3R 29257471 29257502 4 78 2.0 1.0 1.5 1.6 111 chr3R 29257391 3` UTR CG45544 + chr3R 29257446 intergenic CG45544 + chr3R 29257502 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-129 1009 chr3R 29324322 29324357 chr3R 29324401 29324436 6 78 0.5 2.5 1.5 2.4 114 chr3R 29324322 intergenic not near genes chr3R 29324379 intergenic not near genes chr3R 29324436 intergenic not near genes chr3R_6_29320001 chr3R_29320001 RAL-129 1010 chr3R 29391189 29391206 chr3R 29391268 29391289 6 81 2.0 4.0 3.0 1.5 100 chr3R 29391189 intron Ptp99A + chr3R 29391239 intron Ptp99A + chr3R 29391289 intron Ptp99A + chr3R_6_29390001 chr3R_29390001 RAL-129 1011 chr3R 29406631 29406651 chr3R 29407908 29407937 jockey 5 1283 2.0 1.5 1.8 1.8 1306 chr3R 29406631 intron Ptp99A + chr3R 29407284 intron Ptp99A + chr3R 29407937 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-129 1012 chr3R 29449361 29449380 chr3R 29449439 29449447 5 75 1.0 0.5 0.8 2.8 86 chr3R 29449361 intron Ptp99A + chr3R 29449404 intron Ptp99A + chr3R 29449447 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-129 1013 chr3R 29453755 29453785 chr3R 29453827 29453861 6 74 0.0 0.5 0.2 5.0 106 chr3R 29453755 intron Ptp99A + chr3R 29453808 intron Ptp99A + chr3R 29453861 intron Ptp99A + chr3R_6_29450001 chr3R_29450001 RAL-129 1014 chr3R 29539446 29539460 chr3R 29539520 29539536 7 76 1.5 0.0 0.8 3.9 90 chr3R 29539446 intergenic not near genes chr3R 29539491 intergenic not near genes chr3R 29539536 intergenic not near genes chr3R_7_29535001 chr3R_29535001 RAL-129 1015 chr3R 29550261 29550272 chr3R 29550341 29550349 5 79 2.5 1.5 2.0 1.7 88 chr3R 29550261 intergenic not near genes chr3R 29550305 intergenic not near genes chr3R 29550349 intergenic not near genes chr3R_5_29550001 chr3R_29550001 RAL-129 1016 chr3R 29646206 29646228 chr3R 29646280 29646298 5 72 2.0 0.5 1.2 2.3 92 chr3R 29646206 intron Dop1R2 - chr3R 29646252 intron Dop1R2 - chr3R 29646298 intron Dop1R2 - chr3R_5_29645001 chr3R_29645001 RAL-129 1017 chr3R 29758937 29758967 chr3R 29759014 29759043 6 78 1.5 2.0 1.8 2.1 106 chr3R 29758937 3` UTR CR44953 - chr3R 29758990 3` UTR CR44953 - chr3R 29759043 intergenic CR44953 - chr3R_6_29755001 chr3R_29755001 RAL-129 1018 chr3R 29801638 29801651 chr3R 29801722 29801729 6 84 1.5 3.5 2.5 1.7 91 chr3R 29801638 3` UTR CG7834 - chr3R 29801684 3` UTR CG7834 - chr3R 29801729 3` UTR CG7834 - chr3R_6_29800001 chr3R_29800001 RAL-129 1019 chr3R 29801652 29801665 chr3R 29801719 29801752 4 82 1.5 3.5 2.5 1.1 100 chr3R 29801652 3` UTR CG7834 - chr3R 29801702 3` UTR CG7834 - chr3R 29801752 3` UTR CG7834 - chr3R_4_29800001 chr3R_29800001 RAL-129 1020 chr3R 29854844 29854848 chr3R 29854919 29854927 4 78 2.5 5.0 3.8 0.8 83 chr3R 29854844 3` UTR dgt1 - chr3R 29854886 exon dgt1 - chr3R 29854927 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-129 1021 chr3R 29882024 29882043 chr3R 29891181 29891200 roo 4 9157 3.5 0.5 2.0 1.3 9176 chr3R 29882024 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891200 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-129 1022 chr3R 29966349 29966377 chr3R 29966622 29966650 8 273 1.5 1.5 1.5 3.2 301 chr3R 29966349 intron TkR99D - chr3R 29966500 intron TkR99D - chr3R 29966650 intron TkR99D - chr3R_8_29965001 chr3R_29965001 RAL-129 1023 chr3R 30084848 30084883 chr3R 30086315 30086350 hobo 13 1466 3.0 3.0 3.0 3.2 1502 chr3R 30084848 intron sima + chr3R 30085599 intron sima + chr3R 30086350 intron sima + chr3R_13_30085001 chr3R_30085001 RAL-129 1024 chr3R 30170760 30170792 chr3R 30170847 30170878 6 87 0.0 2.0 1.0 3.0 118 chr3R 30170760 intron CG31028 - chr3R 30170819 intron CG31028 - chr3R 30170878 intron CG31028 - chr3R_6_30170001 chr3R_30170001 RAL-129 1025 chr3R 30287774 30287777 chr3R 30287855 30287860 4 82 2.5 1.0 1.8 1.4 86 chr3R 30287774 intron hdc + chr3R 30287817 intron hdc + chr3R 30287860 intron hdc + chr3R_4_30285001 chr3R_30285001 RAL-129 1026 chr3R 30375552 30375572 chr3R 30383175 30383194 412 4 7622 1.0 1.5 1.2 1.8 7642 chr3R 30375552 intergenic not near genes chr3R 30379373 intergenic not near genes chr3R 30383194 intergenic not near genes chr3R_4_30375001 chr3R_30375001 RAL-129 1027 chr3R 30452156 30452186 chr3R 30452276 30452305 7 117 1.0 3.5 2.2 2.2 149 chr3R 30452156 intron aralar1 - chr3R 30452230 intron aralar1 - chr3R 30452305 intron aralar1 - chr3R_7_30450001 chr3R_30450001 RAL-129 1028 chr3R 30456394 30456424 chr3R 30456474 30456504 4 80 0.0 2.0 1.0 2.0 110 chr3R 30456394 intergenic CG2224 - chr3R 30456449 3` UTR CG2224 - chr3R 30456504 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-129 1029 chr3R 30458021 30458042 chr3R 30458101 30458122 4 80 1.0 2.5 1.8 1.4 101 chr3R 30458021 intron CG2224 - chr3R 30458072 intron CG2224 - chr3R 30458122 intron CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-129 1030 chr3R 30480481 30480509 chr3R 30482947 30482976 jockey 5 2467 1.0 2.5 1.8 1.8 2495 chr3R 30480481 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482976 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-129 1031 chr3R 30498409 30498434 chr3R 30498608 30498634 6 197 0.0 0.5 0.2 5.0 225 chr3R 30498409 intron PH4alphaNE1 - chr3R 30498522 intron PH4alphaNE1 - chr3R 30498634 intron PH4alphaNE1 - chr3R_6_30495001 chr3R_30495001 RAL-129 1032 chr3R 30591524 30591534 chr3R 30591864 30591874 4 340 0.0 4.0 2.0 1.3 350 chr3R 30591524 intergenic not near genes chr3R 30591699 intergenic not near genes chr3R 30591874 intergenic not near genes chr3R_4_30590001 chr3R_30590001 RAL-129 1033 chr3R 30592507 30592539 chr3R 30592617 30592649 7 109 2.0 1.0 1.5 2.8 142 chr3R 30592507 intergenic CG2246 - chr3R 30592578 intergenic CG2246 - chr3R 30592649 intergenic CG2246 - chr3R_7_30590001 chr3R_30590001 RAL-129 1034 chr3R 30627601 30627632 chr3R 30627681 30627712 7 78 1.5 3.5 2.5 2.0 111 chr3R 30627601 3` UTR CG2267 - chr3R 30627656 exon CG2267 - chr3R 30627712 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-129 1035 chr3R 30762567 30762597 chr3R 30762658 30762687 6 87 2.5 1.5 2.0 2.0 120 chr3R 30762567 intergenic not near genes chr3R 30762627 intergenic not near genes chr3R 30762687 intergenic not near genes chr3R_6_30760001 chr3R_30760001 RAL-129 1036 chr3R 30973134 30973162 chr3R 30973295 30973323 7 159 0.5 2.0 1.2 3.2 189 chr3R 30973134 intron 5-HT7 - chr3R 30973228 intron 5-HT7 - chr3R 30973323 intron 5-HT7 - chr3R_7_30970001 chr3R_30970001 RAL-129 1037 chr3R 30996639 30996656 chr3R 30996858 30996880 4 221 3.5 1.0 2.2 1.2 241 chr3R 30996639 intron 5-HT7 - chr3R 30996760 intron 5-HT7 - chr3R 30996880 intron 5-HT7 - chr3R_4_30995001 chr3R_30995001 RAL-129 1038 chr3R 31042115 31042134 chr3R 31042201 31042219 4 86 4.5 1.0 2.8 1.1 104 chr3R 31042115 intron CanA1 + chr3R 31042167 intron CanA1 + chr3R 31042219 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-129 1039 chr3R 31049302 31049333 chr3R 31049501 31049532 5 198 1.5 1.5 1.5 2.0 230 chr3R 31049302 exon Aph-4 + chr3R 31049417 intron Aph-4 + chr3R 31049532 intron Aph-4 + chr3R_5_31045001 chr3R_31045001 RAL-129 1040 chr3R 31087109 31087124 chr3R 31087620 31087635 4 510 0.5 3.5 2.0 1.3 526 chr3R 31087109 intergenic not near genes chr3R 31087372 intergenic not near genes chr3R 31087635 intergenic not near genes chr3R_4_31085001 chr3R_31085001 RAL-129 1041 chr3R 31087126 31087128 chr3R 31087618 31087640 4 506 0.5 3.5 2.0 1.3 514 chr3R 31087126 intergenic not near genes chr3R 31087383 intergenic not near genes chr3R 31087640 intergenic not near genes chr3R_4_31085001 chr3R_31085001 RAL-129 1042 chr3R 31099023 31099051 chr3R 31099112 31099144 11 89 0.5 2.0 1.2 5.0 121 chr3R 31099023 exon CG15553 - chr3R 31099084 intron CG15553 - chr3R 31099144 exon CG15553 - chr3R_11_31095001 chr3R_31095001 RAL-129 1043 chr3R 31279371 31279403 chr3R 31285562 31285594 diver 6 6185 2.0 2.0 2.0 2.0 6223 chr3R 31279371 intergenic not near genes chr3R 31282482 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-129 1044 chr3R 31413099 31413122 chr3R 31418299 31418322 copia 6 5198 0.5 1.0 0.8 3.3 5223 chr3R 31413099 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-129 1045 chr3R 31435361 31435389 chr3R 31435513 31435541 5 150 1.0 2.0 1.5 2.0 180 chr3R 31435361 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-129 1046 chr3R 31691531 31691541 chr3R 31696297 31696307 Doc 4 4766 4.5 4.0 4.2 0.8 4776 chr3R 31691531 intergenic not near genes chr3R 31693919 intergenic not near genes chr3R 31696307 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-129 1047 chr3R 31691543 31691561 chr3R 31696296 31696327 Doc 6 4758 2.5 3.5 3.0 1.5 4784 chr3R 31691543 intergenic not near genes chr3R 31693935 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-129 1048 chr3R 31954427 31954456 chr3R 31954508 31954541 5 83 1.0 0.5 0.8 2.8 114 chr3R 31954427 intron heph - chr3R 31954484 intron heph - chr3R 31954541 intron heph - chr3R_5_31950001 chr3R_31950001 RAL-129 1049 chr3R 31957980 31958011 chr3R 31958062 31958093 6 82 1.0 0.5 0.8 3.3 113 chr3R 31957980 intron heph - chr3R 31958036 intron heph - chr3R 31958093 intron heph - chr3R_6_31955001 chr3R_31955001 RAL-129 1050 chr4 671606 671636 chr4 680189 680216 Tirant 5 8582 1.5 2.5 2.0 1.7 8610 chr4 671606 intron CG11360 + chr4 675911 intron CG11360 + chr4 680216 intron CG11360 + chr4_5_675001 chr4_675001 RAL-129 1051 chr4 852912 852930 chr4 853276 853291 6 363 0.0 2.5 1.2 2.7 379 chr4 852912 intergenic not near genes chr4 853102 intergenic not near genes chr4 853291 intergenic CG11148 - chr4_6_850001 chr4_850001 RAL-129 1052 chrX 295859 295881 chrX 303478 303501 412 4 7617 0.5 1.5 1.0 2.0 7642 chrX 295859 intron CG3777 + chrX 299680 intron CG3777 + chrX 303501 intron CG3777 + chrX_4_295001 chrX_295001 RAL-129 1053 chrX 428419 428441 chrX 434604 434626 3S18 6 6185 0.0 1.0 0.5 4.0 6207 chrX 428419 intron CG32816 - chrX 431522 intron CG32816 - chrX 434626 intron CG32816 - chrX_6_430001 chrX_430001 RAL-129 1054 chrX 667645 667684 chrX 667729 667768 7 84 1.5 0.0 0.8 3.9 123 chrX 667645 intergenic not near genes chrX 667706 intergenic not near genes chrX 667768 intergenic not near genes chrX_7_665001 chrX_665001 RAL-129 1055 chrX 670262 670294 chrX 670342 670373 9 78 0.0 1.5 0.8 5.0 111 chrX 670262 intergenic not near genes chrX 670318 intergenic not near genes chrX 670373 intergenic not near genes chrX_9_670001 chrX_670001 RAL-129 1056 chrX 706802 706816 chrX 707166 707180 4 364 0.0 2.0 1.0 2.0 378 chrX 706802 intron sdk + chrX 706991 intron sdk + chrX 707180 intron sdk + chrX_4_705001 chrX_705001 RAL-129 1057 chrX 718341 718358 chrX 718421 718438 4 80 0.0 1.5 0.8 2.2 97 chrX 718341 intron sdk + chrX 718390 intron sdk + chrX 718438 intron sdk + chrX_4_715001 chrX_715001 RAL-129 1058 chrX 778129 778152 chrX 778218 778242 4 89 1.5 0.5 1.0 2.0 113 chrX 778129 intron fz3 + chrX 778186 intron fz3 + chrX 778242 intron fz3 + chrX_4_775001 chrX_775001 RAL-129 1059 chrX 802306 802316 chrX 802368 802373 5 69 0.5 1.5 1.0 2.5 67 chrX 802306 exon CG13359 - chrX 802340 exon CG13359 - chrX 802373 exon CG13359 - chrX_5_800001 chrX_800001 RAL-129 1060 chrX 806786 806805 chrX 806882 806897 5 95 2.5 1.5 2.0 1.7 111 chrX 806786 intron Sec22 + chrX 806842 intron Sec22 + chrX 806897 intron Sec22 + chrX_5_805001 chrX_805001 RAL-129 1061 chrX 906702 906734 chrX 908490 908503 S-element 10 1787 1.0 2.5 1.8 3.6 1801 chrX 906702 intron CG43867 - chrX 907602 intron CG43867 - chrX 908503 intron CG43867 - chrX_10_905001 chrX_905001 RAL-129 1062 chrX 1163312 1163329 chrX 1163390 1163401 5 77 1.0 3.0 2.0 1.7 89 chrX 1163312 intergenic CG34320 - chrX 1163356 intergenic CG34320 - chrX 1163401 intergenic CG34320 - chrX_5_1160001 chrX_1160001 RAL-129 1063 chrX 1357783 1357808 chrX 1367953 1367977 Doc 9 10169 1.5 2.0 1.8 3.2 10194 chrX 1357783 intergenic png - chrX 1362880 intergenic not near genes chrX 1367977 intergenic not near genes chrX_9_1360001 chrX_1360001 RAL-129 1064 chrX 1428592 1428622 chrX 1428677 1428704 10 85 2.5 2.0 2.2 3.1 112 chrX 1428592 intron futsch + chrX 1428648 intron futsch + chrX 1428704 intron futsch + chrX_10_1425001 chrX_1425001 RAL-129 1065 chrX 1518058 1518070 chrX 1523441 1523472 jockey 5 5397 1.5 2.5 2.0 1.7 5414 chrX 1518058 intergenic inc + chrX 1520765 intergenic not near genes chrX 1523472 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-129 1066 chrX 1627974 1627997 chrX 1635441 1635465 gtwin 5 7467 2.0 2.0 2.0 1.7 7491 chrX 1627974 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-129 1067 chrX 2161287 2161308 chrX 2163462 2163491 7 2182 16.5 18.5 17.5 0.4 2204 chrX 2161287 intron Cyp4d1 - chrX 2162389 intron CG3630 + chrX 2163491 intron CG3630 + chrX_7_2160001 chrX_2160001 RAL-129 1068 chrX 2371632 2371663 chrX 2371714 2371744 9 79 1.0 0.0 0.5 6.0 112 chrX 2371632 intron PsGEF - chrX 2371688 intron PsGEF - chrX 2371744 intron PsGEF - chrX_9_2370001 chrX_2370001 RAL-129 1069 chrX 2399835 2399856 chrX 2408188 2408208 roo 4 8353 3.0 1.5 2.2 1.2 8373 chrX 2399835 intergenic not near genes chrX 2404022 intergenic not near genes chrX 2408208 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-129 1070 chrX 2496157 2496192 chrX 2496313 2496350 5 159 1.0 1.5 1.2 2.3 193 chrX 2496157 intron trol - chrX 2496254 intron trol - chrX 2496350 intron trol - chrX_5_2495001 chrX_2495001 RAL-129 1071 chrX 2664401 2664412 chrX 2665547 2665558 1360 4 1146 1.5 1.5 1.5 1.6 1157 chrX 2664401 intron sgg + chrX 2664980 intron sgg + chrX 2665558 intron sgg + chrX_4_2660001 chrX_2660001 RAL-129 1072 chrX 2844901 2844927 chrX 2852307 2852337 mdg1 5 7409 0.0 0.0 0.0 5.0 7436 chrX 2844901 intron kirre + chrX 2848619 intron kirre + chrX 2852337 intron kirre + chrX_5_2845001 chrX_2845001 RAL-129 1073 chrX 2917093 2917104 chrX 2917173 2917184 4 80 2.0 0.5 1.2 1.8 91 chrX 2917093 intron kirre + chrX 2917138 intron kirre + chrX 2917184 intron kirre + chrX_4_2915001 chrX_2915001 RAL-129 1074 chrX 3067938 3067967 chrX 3068026 3068056 7 88 2.0 3.0 2.5 2.0 118 chrX 3067938 intron kirre + chrX 3067997 intron kirre + chrX 3068056 intron kirre + chrX_7_3065001 chrX_3065001 RAL-129 1075 chrX 3124704 3124739 chrX 3124816 3124834 4 108 0.0 1.0 0.5 2.7 130 chrX 3124704 intron kirre + chrX 3124769 intron kirre + chrX 3124834 intron kirre + chrX_4_3120001 chrX_3120001 RAL-129 1076 chrX 3203469 3203492 chrX 3203668 3203688 4 197 1.5 3.5 2.5 1.1 219 chrX 3203469 intron dnc + chrX 3203578 intron dnc + chrX 3203688 intron dnc + chrX_4_3200001 chrX_3200001 RAL-129 1077 chrX 3204158 3204170 chrX 3204245 3204255 4 86 0.5 1.0 0.8 2.2 97 chrX 3204158 intron dnc + chrX 3204206 intron dnc + chrX 3204255 intron dnc + chrX_4_3200001 chrX_3200001 RAL-129 1078 chrX 3208418 3208444 chrX 3208499 3208525 4 81 2.0 2.5 2.2 1.2 107 chrX 3208418 intron dnc + chrX 3208472 intron dnc + chrX 3208525 intron dnc + chrX_4_3205001 chrX_3205001 RAL-129 1079 chrX 3275529 3275539 chrX 3275615 3275626 5 85 3.5 2.5 3.0 1.2 97 chrX 3275529 intron dnc + chrX 3275578 intron dnc + chrX 3275626 intron dnc + chrX_5_3275001 chrX_3275001 RAL-129 1080 chrX 3306349 3306360 chrX 3306428 3306442 5 81 3.0 0.0 1.5 2.0 93 chrX 3306349 intron dnc + chrX 3306396 intron dnc + chrX 3306442 intron dnc + chrX_5_3305001 chrX_3305001 RAL-129 1081 chrX 3415038 3415049 chrX 3421223 3421234 3S18 4 6184 1.5 3.5 2.5 1.1 6196 chrX 3415038 intron,intron CR44999 +,CG12535 - chrX 3418136 intron,intron CR44999 +,CG12535 - chrX 3421234 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-129 1082 chrX 3657413 3657443 chrX 3657493 3657523 6 79 0.5 1.5 1.0 3.0 110 chrX 3657413 intron AstA-R1 + chrX 3657468 intron AstA-R1 + chrX 3657523 intron AstA-R1 + chrX_6_3655001 chrX_3655001 RAL-129 1083 chrX 3842333 3842353 chrX 3842572 3842593 pogo 6 240 0.0 1.5 0.8 3.3 260 chrX 3842333 intron ec + chrX 3842463 intron ec + chrX 3842593 intron ec + chrX_6_3840001 chrX_3840001 RAL-129 1084 chrX 3866105 3866135 chrX 3866183 3866212 9 77 0.0 1.0 0.5 6.0 107 chrX 3866105 intron yin - chrX 3866158 intron yin - chrX 3866212 intron yin - chrX_9_3865001 chrX_3865001 RAL-129 1085 chrX 3881270 3881303 chrX 3881409 3881441 7 138 1.0 1.0 1.0 3.5 171 chrX 3881270 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-129 1086 chrX 4401059 4401088 chrX 4401138 4401166 5 79 0.0 2.0 1.0 2.5 107 chrX 4401059 intron CR32773 - chrX 4401112 intron CR32773 - chrX 4401166 intron CR32773 - chrX_5_4400001 chrX_4400001 RAL-129 1087 chrX 4415307 4415326 chrX 4415383 4415402 4 76 1.0 1.0 1.0 2.0 95 chrX 4415307 intron,intron CR32773 -,bi + chrX 4415354 intron,intron CR32773 -,bi + chrX 4415402 intron,intron CR32773 -,bi + chrX_4_4415001 chrX_4415001 RAL-129 1088 chrX 4700390 4700429 chrX 4700733 4700768 jockey 5 341 0.0 1.5 0.8 2.8 378 chrX 4700390 3` UTR ctp + chrX 4700579 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-129 1089 chrX 4717360 4717386 chrX 4717881 4717905 5 520 0.0 2.0 1.0 2.5 545 chrX 4717360 intron Proc-R + chrX 4717632 intron Proc-R + chrX 4717905 intron Proc-R + chrX_5_4715001 chrX_4715001 RAL-129 1090 chrX 4723578 4723581 chrX 4723658 4723661 4 80 3.5 3.5 3.5 0.9 83 chrX 4723578 intron Proc-R + chrX 4723620 intron Proc-R + chrX 4723661 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-129 1091 chrX 5257376 5257403 chrX 5257485 5257512 4 109 2.5 1.5 2.0 1.3 136 chrX 5257376 intergenic not near genes chrX 5257444 intergenic not near genes chrX 5257512 intergenic not near genes chrX_4_5255001 chrX_5255001 RAL-129 1092 chrX 5272822 5272842 chrX 5272909 5272927 6 84 1.5 1.0 1.2 2.7 105 chrX 5272822 intergenic not near genes chrX 5272874 intergenic not near genes chrX 5272927 intergenic not near genes chrX_6_5270001 chrX_5270001 RAL-129 1093 chrX 6003302 6003312 chrX 6003362 6003392 6 76 0.0 2.0 1.0 3.0 90 chrX 6003302 intron CR44498 + chrX 6003347 intron CR44498 + chrX 6003392 intron CR44498 + chrX_6_6000001 chrX_6000001 RAL-129 1094 chrX 6118716 6118725 chrX 6118793 6118807 5 81 0.0 2.0 1.0 2.5 91 chrX 6118716 intron Ca-alpha1T - chrX 6118762 intron Ca-alpha1T - chrX 6118807 intron Ca-alpha1T - chrX_5_6115001 chrX_6115001 RAL-129 1095 chrX 6312190 6312224 chrX 6312273 6312281 9 77 1.0 1.5 1.2 4.1 91 chrX 6312190 intron CG15894 + chrX 6312236 intron CG15894 + chrX 6312281 intron CG15894 + chrX_9_6310001 chrX_6310001 RAL-129 1096 chrX 6388670 6388694 chrX 6388746 6388770 5 76 1.0 1.0 1.0 2.5 100 chrX 6388670 intergenic not near genes chrX 6388720 intergenic not near genes chrX 6388770 intergenic not near genes chrX_5_6385001 chrX_6385001 RAL-129 1097 chrX 6392870 6392892 chrX 6397634 6397657 Doc 5 4763 3.0 2.0 2.5 1.4 4787 chrX 6392870 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397657 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-129 1098 chrX 6812052 6812085 chrX 6812145 6812178 7 92 1.5 1.5 1.5 2.8 126 chrX 6812052 3` UTR pod1 + chrX 6812115 3` UTR pod1 + chrX 6812178 3` UTR pod1 + chrX_7_6810001 chrX_6810001 RAL-129 1099 chrX 6897690 6897708 chrX 6897800 6897818 4 110 1.0 3.0 2.0 1.3 128 chrX 6897690 intergenic not near genes chrX 6897754 intergenic not near genes chrX 6897818 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-129 1100 chrX 6941604 6941621 chrX 6942688 6942704 7 1085 1.0 3.5 2.2 2.2 1100 chrX 6941604 intron CG14431 + chrX 6942154 intron CG14431 + chrX 6942704 intron CG14431 + chrX_7_6940001 chrX_6940001 RAL-129 1101 chrX 7023604 7023633 chrX 7030993 7031022 Tabor 7 7389 3.5 2.5 3.0 1.8 7418 chrX 7023604 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031022 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-129 1102 chrX 7702908 7702931 chrX 7703344 7703369 jockey 8 436 1.5 1.0 1.2 3.6 461 chrX 7702908 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-129 1103 chrX 8031443 8031460 chrX 8035752 8035769 Juan 4 4309 1.0 2.0 1.5 1.6 4326 chrX 8031443 intergenic not near genes chrX 8033606 intergenic not near genes chrX 8035769 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 RAL-129 1104 chrX 8922325 8922358 chrX 8922759 8922791 jockey 6 430 1.5 2.5 2.0 2.0 466 chrX 8922325 intron rdgA + chrX 8922558 intron rdgA + chrX 8922791 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-129 1105 chrX 9337940 9337966 chrX 9338032 9338040 6 89 2.0 0.5 1.2 2.7 100 chrX 9337940 intron CG34449 - chrX 9337990 intron CG34449 - chrX 9338040 intron CG34449 - chrX_6_9335001 chrX_9335001 RAL-129 1106 chrX 9714769 9714790 chrX 9714866 9714890 6 99 3.0 1.5 2.2 1.9 121 chrX 9714769 intergenic not near genes chrX 9714830 intergenic not near genes chrX 9714890 intergenic not near genes chrX_6_9710001 chrX_9710001 RAL-129 1107 chrX 10154289 10154303 chrX 10154365 10154379 5 76 3.0 1.5 2.2 1.6 90 chrX 10154289 intron,intron CR44894 -,CG12645 + chrX 10154334 intron,intron CR44894 -,CG12645 + chrX 10154379 intron,intron CR44894 -,CG12645 + chrX_5_10150001 chrX_10150001 RAL-129 1108 chrX 10550333 10550367 chrX 10550411 10550445 9 78 1.5 0.5 1.0 4.5 112 chrX 10550333 intron spri - chrX 10550389 intron spri - chrX 10550445 intron spri - chrX_9_10550001 chrX_10550001 RAL-129 1109 chrX 10651630 10651640 chrX 10651745 10651753 4 115 2.5 0.5 1.5 1.6 123 chrX 10651630 intron X11Lbeta + chrX 10651692 intron X11Lbeta + chrX 10651753 intron X11Lbeta + chrX_4_10650001 chrX_10650001 RAL-129 1110 chrX 10837169 10837195 chrX 10846113 10846140 5 8943 9.0 7.5 8.2 0.5 8971 chrX 10837169 exon sbr - chrX 10841654 intron sbr - chrX 10846140 exon sbr - chrX_5_10840001 chrX_10840001 RAL-129 1111 chrX 10933932 10933940 chrX 10934019 10934028 4 87 1.0 2.5 1.8 1.4 96 chrX 10933932 intron Myo10A + chrX 10933980 intron Myo10A + chrX 10934028 intron Myo10A + chrX_4_10930001 chrX_10930001 RAL-129 1112 chrX 11051456 11051486 chrX 11051537 11051565 7 75 1.0 0.0 0.5 4.7 109 chrX 11051456 intergenic not near genes chrX 11051510 intergenic not near genes chrX 11051565 intergenic not near genes chrX_7_11050001 chrX_11050001 RAL-129 1113 chrX 11060270 11060292 chrX 11060373 11060373 4 98 1.0 1.5 1.2 1.8 103 chrX 11060270 intergenic not near genes chrX 11060322 intergenic not near genes chrX 11060373 intergenic not near genes chrX_4_11060001 chrX_11060001 RAL-129 1114 chrX 11109417 11109417 chrX 12946233 12946235 4 1836817 2.0 4.5 3.2 1.0 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-129 1115 chrX 11268569 11268594 chrX 11270057 11270084 hopper2 6 1491 1.0 2.5 1.8 2.1 1515 chrX 11268569 intron CG44422 - chrX 11269326 intron CG44422 - chrX 11270084 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-129 1116 chrX 11571453 11571477 chrX 11571694 11571718 pogo 5 240 2.0 2.0 2.0 1.7 265 chrX 11571453 3` UTR Kmn1 - chrX 11571586 3` UTR Kmn1 - chrX 11571718 3` UTR Kmn1 - chrX_5_11570001 chrX_11570001 RAL-129 1117 chrX 12176739 12176768 chrX 12176815 12176844 4 76 0.0 3.0 1.5 1.6 105 chrX 12176739 intron,3` UTR Ten-a +,CG1924 - chrX 12176792 intron,3` UTR Ten-a +,CG1924 - chrX 12176844 intron,3` UTR Ten-a +,CG1924 - chrX_4_12175001 chrX_12175001 RAL-129 1118 chrX 12233607 12233621 chrX 12233688 12233702 4 80 2.0 3.5 2.8 1.1 95 chrX 12233607 intron Ten-a + chrX 12233654 intron Ten-a + chrX 12233702 intron Ten-a + chrX_4_12230001 chrX_12230001 RAL-129 1119 chrX 12301966 12301989 chrX 12303272 12303295 X-element 7 1304 1.5 2.5 2.0 2.3 1329 chrX 12301966 intron Ten-a + chrX 12302630 intron Ten-a + chrX 12303295 intron Ten-a + chrX_7_12300001 chrX_12300001 RAL-129 1120 chrX 12971694 12971713 chrX 12971771 12971782 5 74 4.0 3.0 3.5 1.1 88 chrX 12971694 intron,exon CR43636 -,CG15721 + chrX 12971738 intron,exon CR43636 -,CG15721 + chrX 12971782 intron,exon CR43636 -,CG15721 + chrX_5_12970001 chrX_12970001 RAL-129 1121 chrX 13146606 13146629 chrX 13146694 13146717 4 88 0.5 1.5 1.0 2.0 111 chrX 13146606 intron CG32645 + chrX 13146662 intron CG32645 + chrX 13146717 intron CG32645 + chrX_4_13145001 chrX_13145001 RAL-129 1122 chrX 13161695 13161712 chrX 13161771 13161789 4 77 2.0 1.0 1.5 1.6 94 chrX 13161695 3` UTR CG12096 + chrX 13161742 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161789 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-129 1123 chrX 13172350 13172379 chrX 13172426 13172438 5 72 0.0 0.0 0.0 5.0 88 chrX 13172350 exon CG34411 - chrX 13172394 intron CG34411 - chrX 13172438 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-129 1124 chrX 13543306 13543325 chrX 13543389 13543408 4 81 0.5 1.0 0.8 2.2 102 chrX 13543306 intergenic Cpr12A + chrX 13543357 intergenic Cpr12A + chrX 13543408 intergenic Cpr12A + chrX_4_13540001 chrX_13540001 RAL-129 1125 chrX 13875965 13875984 chrX 13876049 13876068 4 83 0.0 0.0 0.0 4.0 103 chrX 13875965 intron mamo - chrX 13876016 intron mamo - chrX 13876068 intron mamo - chrX_4_13875001 chrX_13875001 RAL-129 1126 chrX 13937976 13938009 chrX 13941246 13941269 I-element 6 3265 2.0 1.5 1.8 2.1 3293 chrX 13937976 intron mamo - chrX 13939622 intron mamo - chrX 13941269 intron mamo - chrX_6_13935001 chrX_13935001 RAL-129 1127 chrX 13943284 13943301 chrX 13943375 13943383 4 88 0.0 4.5 2.2 1.2 99 chrX 13943284 intron mamo - chrX 13943334 intron mamo - chrX 13943383 intron mamo - chrX_4_13940001 chrX_13940001 RAL-129 1128 chrX 14105029 14105056 chrX 14114179 14114200 roo 5 9148 3.5 3.5 3.5 1.1 9171 chrX 14105029 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114200 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-129 1129 chrX 14157598 14157617 chrX 14163253 14163274 297 4 5656 1.0 1.5 1.2 1.8 5676 chrX 14157598 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163274 intergenic not near genes chrX_4_14160001 chrX_14160001 RAL-129 1130 chrX 14818795 14818798 chrX 14823969 14823979 copia 4 5186 2.0 1.0 1.5 1.6 5184 chrX 14818795 intron rut - chrX 14821387 intron rut - chrX 14823979 intron rut - chrX_4_14820001 chrX_14820001 RAL-129 1131 chrX 14968086 14968099 chrX 14968165 14968178 4 79 1.0 0.5 0.8 2.2 92 chrX 14968086 intron eag + chrX 14968132 intron eag + chrX 14968178 intron eag + chrX_4_14965001 chrX_14965001 RAL-129 1132 chrX 16222775 16222805 chrX 16231125 16231155 roo 5 8350 0.5 0.0 0.2 4.2 8380 chrX 16222775 intergenic not near genes chrX 16226965 intergenic not near genes chrX 16231155 intergenic not near genes chrX_5_16225001 chrX_16225001 RAL-129 1133 chrX 16650930 16650951 chrX 16651007 16651028 5 77 0.0 0.0 0.0 5.0 98 chrX 16650930 intergenic CG32573 +,CG42512 + chrX 16650979 intergenic CG32573 +,CG42512 + chrX 16651028 intergenic CG32573 +,CG42512 + chrX_5_16650001 chrX_16650001 RAL-129 1134 chrX 16689646 16689654 chrX 16689711 16689713 4 70 0.5 1.0 0.8 2.2 67 chrX 16689646 intron Sep4 - chrX 16689680 intron Sep4 - chrX 16689713 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-129 1135 chrX 16965529 16965555 chrX 16965624 16965650 5 92 3.0 0.0 1.5 2.0 121 chrX 16965529 intron CG9086 - chrX 16965590 intron CG9086 - chrX 16965650 intron CG9086 - chrX_5_16965001 chrX_16965001 RAL-129 1136 chrX 17089598 17089623 chrX 17089724 17089749 5 126 1.0 0.5 0.8 2.8 151 chrX 17089598 intergenic not near genes chrX 17089674 intergenic not near genes chrX 17089749 intergenic not near genes chrX_5_17085001 chrX_17085001 RAL-129 1137 chrX 17122639 17122664 chrX 17122730 17122754 6 90 2.0 2.0 2.0 2.0 115 chrX 17122639 intron CG5004 + chrX 17122696 intron CG5004 + chrX 17122754 intron CG5004 + chrX_6_17120001 chrX_17120001 RAL-129 1138 chrX 17372349 17372367 chrX 17372441 17372459 4 92 3.5 2.5 3.0 1.0 110 chrX 17372349 intergenic not near genes chrX 17372404 intergenic not near genes chrX 17372459 intergenic not near genes chrX_4_17370001 chrX_17370001 RAL-129 1139 chrX 17556941 17556966 chrX 17557440 17557456 mdg1 5 492 2.0 0.5 1.2 2.3 515 chrX 17556941 intron CG43658 - chrX 17557198 intron CG43658 - chrX 17557456 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-129 1140 chrX 17680903 17680923 chrX 17680968 17680995 6 71 0.0 1.5 0.8 3.3 92 chrX 17680903 intron chas - chrX 17680949 intron chas - chrX 17680995 intron chas - chrX_6_17680001 chrX_17680001 RAL-129 1141 chrX 17782221 17782242 chrX 17782319 17782340 6 96 1.0 2.0 1.5 2.4 119 chrX 17782221 intergenic not near genes chrX 17782280 intergenic not near genes chrX 17782340 intergenic not near genes chrX_6_17780001 chrX_17780001 RAL-129 1142 chrX 17782565 17782585 chrX 17782654 17782674 4 86 3.5 2.5 3.0 1.0 109 chrX 17782565 intergenic not near genes chrX 17782620 intergenic not near genes chrX 17782674 intergenic not near genes chrX_4_17780001 chrX_17780001 RAL-129 1143 chrX 17968895 17968922 chrX 17969013 17969040 4 118 0.5 1.5 1.0 2.0 145 chrX 17968895 intron Sh - chrX 17968968 intron Sh - chrX 17969040 intron Sh - chrX_4_17965001 chrX_17965001 RAL-129 1144 chrX 18093665 18093685 chrX 18093869 18093878 5 204 3.5 2.5 3.0 1.2 213 chrX 18093665 5` UTR RhoGAP16F + chrX 18093772 5` UTR RhoGAP16F + chrX 18093878 5` UTR RhoGAP16F + chrX_5_18090001 chrX_18090001 RAL-129 1145 chrX 18122820 18122844 chrX 18122896 18122920 7 74 2.5 1.5 2.0 2.3 100 chrX 18122820 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122920 intergenic CR45606 + chrX_7_18120001 chrX_18120001 RAL-129 1146 chrX 18194075 18194100 chrX 18194609 18194614 BS 6 528 1.0 1.0 1.0 3.0 539 chrX 18194075 intron Frq2 + chrX 18194344 intron Frq2 + chrX 18194614 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-129 1147 chrX 18281547 18281583 chrX 18281629 18281665 5 81 1.5 1.0 1.2 2.3 118 chrX 18281547 intron upd3 + chrX 18281606 intron upd3 + chrX 18281665 intron upd3 + chrX_5_18280001 chrX_18280001 RAL-129 1148 chrX 12946235 12946235 chrX 18572525 18572526 4 5626290 4.0 4.5 4.2 0.8 5626291 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_4_15755001 chrX_15755001 RAL-129 1149 chrX 18752879 18752896 chrX 18753075 18753093 6 197 1.0 1.5 1.2 2.7 214 chrX 18752879 intergenic not near genes chrX 18752986 intergenic not near genes chrX 18753093 intergenic not near genes chrX_6_18750001 chrX_18750001 RAL-129 1150 chrX 18849261 18849274 chrX 18849360 18849373 4 99 2.0 2.5 2.2 1.2 112 chrX 18849261 intron CG34422 + chrX 18849317 intron CG34422 + chrX 18849373 intron CG34422 + chrX_4_18845001 chrX_18845001 RAL-129 1151 chrX 18957070 18957103 chrX 18965733 18965766 roo 7 8662 0.0 1.0 0.5 4.7 8696 chrX 18957070 intron CG43759 + chrX 18961418 intron CG43759 + chrX 18965766 intron CG43759 + chrX_7_18960001 chrX_18960001 RAL-129 1152 chrX 19014361 19014395 chrX 19014439 19014444 4 71 3.0 3.0 3.0 1.0 83 chrX 19014361 intron CG43759 + chrX 19014402 intron CG43759 + chrX 19014444 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-129 1153 chrX 19060408 19060438 chrX 19065191 19065222 Doc 4 4784 1.5 1.0 1.2 1.8 4814 chrX 19060408 intron CG14190 + chrX 19062815 intron CG14190 + chrX 19065222 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-129 1154 chrX 19084104 19084118 chrX 19084224 19084238 4 120 0.0 1.0 0.5 2.7 134 chrX 19084104 intergenic CR45503 + chrX 19084171 intergenic CR45503 + chrX 19084238 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-129 1155 chrX 19187539 19187543 chrX 19187604 19187604 4 68 2.5 0.0 1.2 1.8 65 chrX 19187539 intergenic CG33253 +,Mec2 + chrX 19187572 intergenic CG33253 +,Mec2 + chrX 19187604 intergenic CG33253 +,Mec2 + chrX_4_19185001 chrX_19185001 RAL-129 1156 chrX 13057298 13057299 chrX 19242812 19242813 11 6185514 1.5 3.5 2.5 3.1 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_11_16150001 chrX_16150001 RAL-129 1157 chrX 19472125 19472158 chrX 19472695 19472696 jockey 6 561 2.5 1.0 1.8 2.1 571 chrX 19472125 intergenic kek5 + chrX 19472410 intergenic kek5 + chrX 19472696 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-129 1158 chrX 19576559 19576576 chrX 19576636 19576653 6 78 1.5 1.0 1.2 2.7 94 chrX 19576559 intron Tao - chrX 19576606 intron Tao - chrX 19576653 intron Tao - chrX_6_19575001 chrX_19575001 RAL-129 1159 chrX 19593947 19593973 chrX 19594032 19594058 5 84 1.5 2.0 1.8 1.8 111 chrX 19593947 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594058 intron CG14205 + chrX_5_19590001 chrX_19590001 RAL-129 1160 chrX 19710089 19710099 chrX 19711870 19711881 S-element 4 1784 2.5 3.0 2.8 1.1 1792 chrX 19710089 intron meso18E - chrX 19710985 intron meso18E - chrX 19711881 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-129 1161 chrX 19884089 19884113 chrX 19884164 19884176 4 69 1.0 1.5 1.2 1.8 87 chrX 19884089 intron Hers + chrX 19884132 intron Hers + chrX 19884176 intron Hers + chrX_4_19880001 chrX_19880001 RAL-129 1162 chrX 19983862 19983888 chrX 19983942 19983962 5 78 0.0 0.0 0.0 5.0 100 chrX 19983862 intergenic not near genes chrX 19983912 intergenic not near genes chrX 19983962 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-129 1163 chrX 20041538 20041565 chrX 20041617 20041645 7 80 0.5 2.5 1.5 2.8 107 chrX 20041538 intron Dop2R - chrX 20041592 intron Dop2R - chrX 20041645 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-129 1164 chrX 20065808 20065834 chrX 20065887 20065913 6 78 1.0 2.0 1.5 2.4 105 chrX 20065808 intergenic not near genes chrX 20065860 intergenic not near genes chrX 20065913 intergenic not near genes chrX_6_20065001 chrX_20065001 RAL-129 1165 chrX 20377329 20377338 chrX 20378795 20378804 hobo 5 1465 2.5 4.0 3.2 1.2 1475 chrX 20377329 intergenic not near genes chrX 20378066 intergenic not near genes chrX 20378804 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-129 1166 chrX 20383792 20383823 chrX 20383892 20383923 6 98 2.0 1.0 1.5 2.4 131 chrX 20383792 intergenic not near genes chrX 20383858 intergenic not near genes chrX 20383923 intergenic not near genes chrX_6_20380001 chrX_20380001 RAL-129 1167 chrX 20384254 20384290 chrX 20384337 20384338 5 76 3.0 1.0 2.0 1.7 84 chrX 20384254 intergenic not near genes chrX 20384296 intergenic not near genes chrX 20384338 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-129 1168 chrX 20503176 20503195 chrX 20503271 20503292 4 96 0.5 1.0 0.8 2.2 116 chrX 20503176 intron RhoGAP19D - chrX 20503234 intron RhoGAP19D - chrX 20503292 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-129 1169 chrX 20504136 20504149 chrX 20505656 20505670 transib2 4 1520 3.0 3.0 3.0 1.0 1534 chrX 20504136 intron RhoGAP19D - chrX 20504903 intron RhoGAP19D - chrX 20505670 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-129 1170 chrX 20528622 20528631 chrX 20528968 20528979 4 347 1.0 2.5 1.8 1.4 357 chrX 20528622 intergenic not near genes chrX 20528800 intergenic not near genes chrX 20528979 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-129 1171 chrX 20940720 20940756 chrX 20942189 20942225 hobo 7 1465 2.5 0.5 1.5 2.8 1505 chrX 20940720 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942225 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-129 1172 chrX 20981029 20981050 chrX 20981132 20981153 4 98 2.5 1.0 1.8 1.4 124 chrX 20981029 intergenic not near genes chrX 20981091 intergenic not near genes chrX 20981153 intergenic not near genes chrX_4_20980001 chrX_20980001 RAL-129 1173 chrX 21061867 21061885 chrX 21062352 21062370 roo 6 485 1.0 2.0 1.5 2.4 503 chrX 21061867 intron bves + chrX 21062118 intron bves + chrX 21062370 intron,3` UTR bves +,CG32512 - chrX_6_21060001 chrX_21060001 RAL-129 1174 chrX 21428343 21428354 chrX 21428533 21428544 4 190 1.0 1.5 1.2 1.8 201 chrX 21428343 intron CG42343 - chrX 21428444 intron CG42343 - chrX 21428544 intron CG42343 - chrX_4_21425001 chrX_21425001 RAL-129 1175 chrX 21451613 21451628 chrX 21451690 21451705 4 77 1.5 2.0 1.8 1.4 92 chrX 21451613 intron CG42343 - chrX 21451659 intron CG42343 - chrX 21451705 intron CG42343 - chrX_4_21450001 chrX_21450001 RAL-129 1176 chrX 21565428 21565444 chrX 21565505 21565522 4 78 1.0 1.5 1.2 1.8 94 chrX 21565428 intergenic not near genes chrX 21565475 intergenic not near genes chrX 21565522 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-129 1177 chrX 22982842 22982859 chrX 22983025 22983042 5 183 3.5 2.0 2.8 1.3 200 chrX 22982842 intron,intron stnA -,stnB - chrX 22982942 intron,intron stnA -,stnB - chrX 22983042 intron,intron stnA -,stnB - chrX_5_22980001 chrX_22980001 RAL-129 1178 chrX 22996309 22996330 chrX 23003543 23003563 roo 6 7234 1.0 1.0 1.0 3.0 7254 chrX 22996309 intron,intron stnA -,stnB - chrX 22999936 intron,intron stnA -,stnB - chrX 23003563 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-129 1179 chrY 975591 975817 chrY 975707 975897 9 96 109.0 99.5 104.2 0.1 306 chrY 975591 intergenic not near genes chrY 975744 intergenic not near genes chrY 975897 intergenic not near genes chrY_9_975001 chrY_975001 RAL-129 1180 chrY 1431368 1431372 chrY 1447403 1447408 Doc 5 16036 3.0 6.5 4.8 0.9 16040 chrY 1431368 intergenic not near genes chrY 1439388 intergenic not near genes chrY 1447408 intergenic not near genes chrY_5_1435001 chrY_1435001 RAL-129