SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 89716 89741 chr2L 89793 89811 4 75 5.5 4.0 4.8 0.7 95 chr2L 89716 intergenic not near genes chr2L 89764 intergenic not near genes chr2L 89811 intergenic not near genes chr2L_4_85001 chr2L_85001 RAL-109_75b 2 chr2L 91179 91197 chr2L 91255 91271 4 74 5.5 4.5 5.0 0.7 92 chr2L 91179 intergenic not near genes chr2L 91225 intergenic not near genes chr2L 91271 intergenic not near genes chr2L_4_90001 chr2L_90001 RAL-109_75b 3 chr2L 179463 179490 chr2L 179539 179573 4 81 2.0 0.0 1.0 2.0 110 chr2L 179463 intron spen + chr2L 179518 intron spen + chr2L 179573 intron spen + chr2L_4_175001 chr2L_175001 RAL-109_75b 4 chr2L 180295 180326 chr2L 180462 180494 5 168 5.5 7.5 6.5 0.7 199 chr2L 180295 intron spen + chr2L 180394 intron spen + chr2L 180494 intron spen + chr2L_5_180001 chr2L_180001 RAL-109_75b 5 chr2L 314140 314152 chr2L 314217 314229 5 77 1.0 2.5 1.8 1.8 89 chr2L 314140 intron Plc21C + chr2L 314184 intron Plc21C + chr2L 314229 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-109_75b 6 chr2L 590626 590639 chr2L 590727 590739 4 100 7.5 4.5 6.0 0.6 113 chr2L 590626 intron Gsc - chr2L 590682 intron Gsc - chr2L 590739 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-109_75b 7 chr2L 686925 686950 chr2L 695965 695990 roo 4 9040 2.0 3.5 2.8 1.1 9065 chr2L 686925 intron ds - chr2L 691458 intron ds - chr2L 695990 intron ds - chr2L_4_690001 chr2L_690001 RAL-109_75b 8 chr2L 770478 770488 chr2L 772246 772269 Bari1 5 1777 1.5 1.5 1.5 2.0 1791 chr2L 770478 intergenic not near genes chr2L 771374 intergenic not near genes chr2L 772269 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-109_75b 9 chr2L 848615 848639 chr2L 848698 848722 5 79 7.0 6.5 6.8 0.6 107 chr2L 848615 intron drongo - chr2L 848668 intron drongo - chr2L 848722 intron drongo - chr2L_5_845001 chr2L_845001 RAL-109_75b 10 chr2L 926549 926575 chr2L 926643 926651 5 90 2.0 2.0 2.0 1.7 102 chr2L 926549 intron CG4341 + chr2L 926600 intron CG4341 + chr2L 926651 intron CG4341 + chr2L_5_925001 chr2L_925001 RAL-109_75b 11 chr2L 1066096 1066127 chr2L 1066177 1066190 9 77 6.0 7.5 6.8 1.2 94 chr2L 1066096 intron S - chr2L 1066143 intron S - chr2L 1066190 intron S - chr2L_9_1065001 chr2L_1065001 RAL-109_75b 12 chr2L 1066649 1066680 chr2L 1066933 1066935 6 275 6.0 8.0 7.0 0.8 286 chr2L 1066649 intron S - chr2L 1066792 intron S - chr2L 1066935 intron S - chr2L_6_1065001 chr2L_1065001 RAL-109_75b 13 chr2L 1570695 1570719 chr2L 1573567 1573591 F-element 4 2872 2.5 3.5 3.0 1.0 2896 chr2L 1570695 intron haf + chr2L 1572143 intron haf + chr2L 1573591 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-109_75b 14 chr2L 1828536 1828569 chr2L 1828647 1828680 4 111 3.5 3.5 3.5 0.9 144 chr2L 1828536 intergenic not near genes chr2L 1828608 intergenic not near genes chr2L 1828680 intergenic not near genes chr2L_4_1825001 chr2L_1825001 RAL-109_75b 15 chr2L 1888595 1888677 chr2L 1888695 1888749 4 91 2.0 2.0 2.0 1.3 154 chr2L 1888595 intron CG7337 + chr2L 1888672 intron CG7337 + chr2L 1888749 intron CG7337 + chr2L_4_1885001 chr2L_1885001 RAL-109_75b 16 chr2L 2100380 2100408 chr2L 2109531 2109554 roo 6 9148 2.5 4.0 3.2 1.4 9174 chr2L 2100380 intron dpr3 - chr2L 2104967 intron dpr3 - chr2L 2109554 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-109_75b 17 chr2L 2262312 2262338 chr2L 2262387 2262411 4 76 2.0 0.0 1.0 2.0 99 chr2L 2262312 intergenic not near genes chr2L 2262362 intergenic not near genes chr2L 2262411 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-109_75b 18 chr2L 2311073 2311082 chr2L 2311169 2311178 4 96 1.5 0.0 0.8 2.2 105 chr2L 2311073 intron CG9967 - chr2L 2311126 intron CG9967 - chr2L 2311178 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-109_75b 19 chr2L 2698878 2698895 chr2L 2698965 2698980 5 86 4.0 2.5 3.2 1.2 102 chr2L 2698878 intron CG31690 + chr2L 2698929 intron CG31690 + chr2L 2698980 intron CG31690 + chr2L_5_2695001 chr2L_2695001 RAL-109_75b 20 chr2L 2826542 2826576 chr2L 2826633 2826661 5 82 2.5 4.0 3.2 1.2 119 chr2L 2826542 intron Duox - chr2L 2826602 intron Duox - chr2L 2826661 intron Duox - chr2L_5_2825001 chr2L_2825001 RAL-109_75b 21 chr2L 3108871 3108899 chr2L 3108948 3108976 4 76 1.5 0.0 0.8 2.2 105 chr2L 3108871 intron toc - chr2L 3108924 intron toc - chr2L 3108976 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-109_75b 22 chr2L 3291249 3291270 chr2L 3291329 3291350 7 79 1.0 3.5 2.2 2.2 101 chr2L 3291249 3` UTR CG9664 - chr2L 3291300 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_7_3290001 chr2L_3290001 RAL-109_75b 23 chr2L 3418327 3418354 chr2L 3418450 3418477 4 118 3.5 2.5 3.0 1.0 150 chr2L 3418327 intron pgant2 - chr2L 3418402 intron pgant2 - chr2L 3418477 intron pgant2 - chr2L_4_3415001 chr2L_3415001 RAL-109_75b 24 chr2L 3508352 3508366 chr2L 3508430 3508444 5 78 1.0 2.0 1.5 2.0 92 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508444 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-109_75b 25 chr2L 3634109 3634131 chr2L 3634191 3634213 4 81 3.5 6.0 4.8 0.7 104 chr2L 3634109 intron for - chr2L 3634161 intron for - chr2L 3634213 intron for - chr2L_4_3630001 chr2L_3630001 RAL-109_75b 26 chr2L 3634133 3634136 chr2L 3634180 3634212 4 66 2.5 4.5 3.5 0.9 79 chr2L 3634133 intron for - chr2L 3634172 intron for - chr2L 3634212 intron for - chr2L_4_3630001 chr2L_3630001 RAL-109_75b 27 chr2L 4117759 4117784 chr2L 4117842 4117849 4 80 5.5 5.5 5.5 0.6 90 chr2L 4117759 intergenic not near genes chr2L 4117804 intergenic not near genes chr2L 4117849 intergenic not near genes chr2L_4_4115001 chr2L_4115001 RAL-109_75b 28 chr2L 4243707 4243728 chr2L 4243797 4243818 5 87 4.5 4.5 4.5 0.9 111 chr2L 4243707 intergenic not near genes chr2L 4243762 intergenic not near genes chr2L 4243818 intergenic not near genes chr2L_5_4240001 chr2L_4240001 RAL-109_75b 29 chr2L 4317883 4317910 chr2L 4317961 4317987 4 78 1.0 2.0 1.5 1.6 104 chr2L 4317883 intron tutl + chr2L 4317935 intron tutl + chr2L 4317987 intron tutl + chr2L_4_4315001 chr2L_4315001 RAL-109_75b 30 chr2L 4601704 4601728 chr2L 4609145 4609168 mdg1 9 7438 5.5 2.5 4.0 1.8 7464 chr2L 4601704 intron dp - chr2L 4605436 intron dp - chr2L 4609168 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-109_75b 31 chr2L 5476207 5476238 chr2L 5476282 5476314 5 72 4.0 4.5 4.2 1.0 107 chr2L 5476207 intergenic not near genes chr2L 5476260 intergenic not near genes chr2L 5476314 intergenic not near genes chr2L_5_5475001 chr2L_5475001 RAL-109_75b 32 chr2L 5827720 5827741 chr2L 5836716 5836733 roo 8 8999 2.5 1.0 1.8 2.9 9013 chr2L 5827720 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836733 intron TrissinR + chr2L_8_5830001 chr2L_5830001 RAL-109_75b 33 chr2L 5897602 5897628 chr2L 5897685 5897711 8 79 1.0 2.5 1.8 2.9 109 chr2L 5897602 intergenic not near genes chr2L 5897656 intergenic not near genes chr2L 5897711 intergenic not near genes chr2L_8_5895001 chr2L_5895001 RAL-109_75b 34 chr2L 5982138 5982164 chr2L 5982217 5982231 4 72 8.0 7.5 7.8 0.5 93 chr2L 5982138 intron eIF-4a + chr2L 5982184 intron eIF-4a + chr2L 5982231 intron eIF-4a + chr2L_4_5980001 chr2L_5980001 RAL-109_75b 35 chr2L 6370244 6370268 chr2L 6370325 6370343 4 80 5.0 7.5 6.2 0.6 99 chr2L 6370244 intergenic CG9505 + chr2L 6370294 intergenic CG9505 + chr2L 6370343 intergenic CG9505 + chr2L_4_6370001 chr2L_6370001 RAL-109_75b 36 chr2L 6373048 6373074 chr2L 6373133 6373134 4 78 6.0 4.5 5.2 0.6 86 chr2L 6373048 intron slam + chr2L 6373091 intron slam + chr2L 6373134 intron slam + chr2L_4_6370001 chr2L_6370001 RAL-109_75b 37 chr2L 6397407 6397423 chr2L 6397501 6397512 4 93 3.5 5.5 4.5 0.7 105 chr2L 6397407 intron CG42368 - chr2L 6397460 intron CG42368 - chr2L 6397512 intron CG42368 - chr2L_4_6395001 chr2L_6395001 RAL-109_75b 38 chr2L 6426857 6426878 chr2L 6445117 6445138 roo 6 18260 1.5 1.5 1.5 2.4 18281 chr2L 6426857 3` UTR CG9527 - chr2L 6435998 intron CG9527 - chr2L 6445138 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-109_75b 39 chr2L 7087846 7087865 chr2L 7088403 7088423 4 557 5.5 0.5 3.0 1.0 577 chr2L 7087846 intergenic not near genes chr2L 7088134 intergenic not near genes chr2L 7088423 intergenic not near genes chr2L_4_7085001 chr2L_7085001 RAL-109_75b 40 chr2L 7301301 7301315 chr2L 7301384 7301396 4 82 5.0 4.5 4.8 0.7 95 chr2L 7301301 intergenic not near genes chr2L 7301348 intergenic not near genes chr2L 7301396 intergenic not near genes chr2L_4_7300001 chr2L_7300001 RAL-109_75b 41 chr2L 7579904 7579920 chr2L 7579972 7579998 5 78 6.5 6.0 6.2 0.7 94 chr2L 7579904 intergenic not near genes chr2L 7579951 intergenic not near genes chr2L 7579998 intergenic not near genes chr2L_5_7575001 chr2L_7575001 RAL-109_75b 42 chr2L 7702895 7702917 chr2L 7703062 7703085 6 168 2.0 3.0 2.5 1.7 190 chr2L 7702895 5` UTR Tep3 + chr2L 7702990 5` UTR Tep3 + chr2L 7703085 5` UTR Tep3 + chr2L_6_7700001 chr2L_7700001 RAL-109_75b 43 chr2L 7905627 7905652 chr2L 7905712 7905742 6 87 6.5 6.5 6.5 0.8 115 chr2L 7905627 intron Snoo - chr2L 7905684 intron Snoo - chr2L 7905742 intron Snoo - chr2L_6_7905001 chr2L_7905001 RAL-109_75b 44 chr2L 8166045 8166062 chr2L 8166134 8166152 4 89 4.0 2.0 3.0 1.0 107 chr2L 8166045 intron Piezo + chr2L 8166098 intron Piezo + chr2L 8166152 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-109_75b 45 chr2L 8999957 8999977 chr2L 9000038 9000057 4 77 8.5 9.0 8.8 0.4 100 chr2L 8999957 intergenic Try29F + chr2L 9000007 intergenic Try29F + chr2L 9000057 intergenic Try29F + chr2L_4_9000001 chr2L_9000001 RAL-109_75b 46 chr2L 9000292 9000303 chr2L 9007788 9007792 roo 5 7503 3.0 1.0 2.0 1.7 7500 chr2L 9000292 intergenic Try29F + chr2L 9004042 intergenic not near genes chr2L 9007792 intergenic not near genes chr2L_5_9000001 chr2L_9000001 RAL-109_75b 47 chr2L 9084336 9084340 chr2L 16217660 16217661 23 7133321 10.0 7.5 8.8 2.3 7133325 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_23_12650001 chr2L_12650001 RAL-109_75b 48 chr2L 9456942 9457104 chr2L 9457023 9457181 8 77 5.5 6.0 5.8 1.2 239 chr2L 9456942 intron numb + chr2L 9457062 intron numb + chr2L 9457181 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-109_75b 49 chr2L 9532279 9532304 chr2L 9532369 9532393 4 90 14.0 11.0 12.5 0.3 114 chr2L 9532279 intron Oatp30B + chr2L 9532336 intron Oatp30B + chr2L 9532393 intron Oatp30B + chr2L_4_9530001 chr2L_9530001 RAL-109_75b 50 chr2L 9892503 9892526 chr2L 9892579 9892602 4 76 3.5 0.5 2.0 1.3 99 chr2L 9892503 intron mtDNA-helicase - chr2L 9892552 intron mtDNA-helicase - chr2L 9892602 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-109_75b 51 chr2L 9973726 9973759 chr2L 9980845 9980856 HMS-Beagle 7 7111 4.0 3.0 3.5 1.6 7130 chr2L 9973726 intergenic not near genes chr2L 9977291 intergenic not near genes chr2L 9980856 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-109_75b 52 chr2L 10563934 10563944 chr2L 10564027 10564030 4 91 1.0 1.0 1.0 2.0 96 chr2L 10563934 intron Trim9 + chr2L 10563982 intron Trim9 + chr2L 10564030 intron Trim9 + chr2L_4_10560001 chr2L_10560001 RAL-109_75b 53 chr2L 10572699 10572733 chr2L 10572780 10572806 5 79 1.0 1.0 1.0 2.5 107 chr2L 10572699 intron Trim9 + chr2L 10572752 intron Trim9 + chr2L 10572806 intron Trim9 + chr2L_5_10570001 chr2L_10570001 RAL-109_75b 54 chr2L 10862842 10862881 chr2L 10864453 10864472 Rt1c 10 1606 1.5 3.0 2.2 3.1 1630 chr2L 10862842 3` UTR CR43807 - chr2L 10863657 intron CR43807 - chr2L 10864472 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-109_75b 55 chr2L 10946965 10946976 chr2L 10956158 10956169 roo 4 9204 1.5 2.5 2.0 1.3 9204 chr2L 10946965 intron dpr2 - chr2L 10951567 intron dpr2 - chr2L 10956169 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-109_75b 56 chr2L 11941721 11941746 chr2L 11941837 11941862 5 115 2.5 0.0 1.2 2.3 141 chr2L 11941721 intergenic not near genes chr2L 11941792 intergenic not near genes chr2L 11941862 intergenic not near genes chr2L_5_11940001 chr2L_11940001 RAL-109_75b 57 chr2L 12693838 12693872 chr2L 12693915 12693918 5 66 1.0 0.5 0.8 2.8 80 chr2L 12693838 exon CG6153 + chr2L 12693878 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693918 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_5_12690001 chr2L_12690001 RAL-109_75b 58 chr2L 12894021 12894054 chr2L 12895484 12895513 hobo 4 1454 1.0 3.5 2.2 1.2 1492 chr2L 12894021 intergenic not near genes chr2L 12894767 intergenic not near genes chr2L 12895513 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-109_75b 59 chr2L 13241959 13241986 chr2L 13244343 13244345 BS 5 2379 3.5 2.5 3.0 1.2 2386 chr2L 13241959 5` UTR CR45330 + chr2L 13243152 intron CR45330 + chr2L 13244345 5` UTR CR45330 + chr2L_5_13240001 chr2L_13240001 RAL-109_75b 60 chr2L 13321898 13321916 chr2L 13321987 13322005 5 89 9.5 6.5 8.0 0.6 107 chr2L 13321898 intron CG43778 - chr2L 13321952 intron CG43778 - chr2L 13322005 intron CG43778 - chr2L_5_13320001 chr2L_13320001 RAL-109_75b 61 chr2L 13321919 13321931 chr2L 13321985 13321996 4 72 8.0 7.0 7.5 0.5 77 chr2L 13321919 intron CG43778 - chr2L 13321958 intron CG43778 - chr2L 13321996 intron CG43778 - chr2L_4_13320001 chr2L_13320001 RAL-109_75b 62 chr2L 13405658 13405683 chr2L 13410451 13410458 Doc 5 4789 1.0 2.5 1.8 1.8 4800 chr2L 13405658 exon CG7110 + chr2L 13408058 intron CG7110 + chr2L 13410458 intron CG7110 + chr2L_5_13405001 chr2L_13405001 RAL-109_75b 63 chr2L 13622157 13622229 chr2L 13622234 13622332 5 96 3.0 4.5 3.8 1.0 175 chr2L 13622157 intron kuz + chr2L 13622244 intron kuz + chr2L 13622332 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-109_75b 64 chr2L 13853092 13853107 chr2L 13862241 13862250 roo 4 9148 1.5 1.5 1.5 1.6 9158 chr2L 13853092 intron CenG1A + chr2L 13857671 intron CenG1A + chr2L 13862250 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-109_75b 65 chr2L 13867904 13867927 chr2L 13867995 13868016 4 90 11.0 8.0 9.5 0.4 112 chr2L 13867904 intron CenG1A + chr2L 13867960 intron CenG1A + chr2L 13868016 intron CenG1A + chr2L_4_13865001 chr2L_13865001 RAL-109_75b 66 chr2L 14180073 14180085 chr2L 14180149 14180161 5 75 5.0 1.5 3.2 1.2 88 chr2L 14180073 intron CG43333 - chr2L 14180117 intron CG43333 - chr2L 14180161 intron CG43333 - chr2L_5_14180001 chr2L_14180001 RAL-109_75b 67 chr2L 14554170 14554177 chr2L 14554247 14554254 4 77 8.0 3.5 5.8 0.6 84 chr2L 14554170 intergenic not near genes chr2L 14554212 intergenic not near genes chr2L 14554254 intergenic not near genes chr2L_4_14550001 chr2L_14550001 RAL-109_75b 68 chr2L 14707177 14707238 chr2L 14707263 14707357 4 111 1.5 1.5 1.5 1.6 180 chr2L 14707177 intergenic not near genes chr2L 14707267 intergenic not near genes chr2L 14707357 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-109_75b 69 chr2L 15852051 15852070 chr2L 15852134 15852154 6 81 6.5 6.0 6.2 0.8 103 chr2L 15852051 intergenic not near genes chr2L 15852102 intergenic CG13243 + chr2L 15852154 intergenic CG13243 + chr2L_6_15850001 chr2L_15850001 RAL-109_75b 70 chr2L 15915659 15915686 chr2L 15915737 15915764 4 78 8.5 7.0 7.8 0.5 105 chr2L 15915659 intron beat-Ib - chr2L 15915712 intron beat-Ib - chr2L 15915764 intron beat-Ib - chr2L_4_15915001 chr2L_15915001 RAL-109_75b 71 chr2L 15956027 15956059 chr2L 15957494 15957511 hobo 4 1453 2.0 1.0 1.5 1.6 1484 chr2L 15956027 intron beat-Ib - chr2L 15956769 intron beat-Ib - chr2L 15957511 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-109_75b 72 chr2L 15960861 15960864 chr2L 15961089 15961114 4 234 5.5 8.0 6.8 0.5 253 chr2L 15960861 intron,5` UTR beat-Ib -,CR43803 + chr2L 15960988 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961114 intron,5` UTR beat-Ib -,CR43803 + chr2L_4_15960001 chr2L_15960001 RAL-109_75b 73 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 13 145889 14.5 8.0 11.2 1.1 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-109_75b 74 chr2L 9084337 9084340 chr2L 16217660 16217660 17 7133321 10.0 7.5 8.8 1.7 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-109_75b 75 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 13 145889 14.5 7.5 11.0 1.1 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-109_75b 76 chr2L 16280255 16280280 chr2L 16281423 16281448 1360 5 1167 3.5 2.5 3.0 1.2 1193 chr2L 16280255 intron crp - chr2L 16280852 intron crp - chr2L 16281448 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-109_75b 77 chr2L 16384489 16384524 chr2L 16384578 16384598 7 87 9.0 8.0 8.5 0.7 109 chr2L 16384489 intergenic not near genes chr2L 16384544 intergenic not near genes chr2L 16384598 intergenic not near genes chr2L_7_16380001 chr2L_16380001 RAL-109_75b 78 chr2L 17273191 17273222 chr2L 17277974 17278004 F-element 7 4783 3.0 3.0 3.0 1.8 4813 chr2L 17273191 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278004 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-109_75b 79 chr2L 17319118 17319137 chr2L 17319194 17319213 7 76 2.5 4.5 3.5 1.6 95 chr2L 17319118 3` UTR CR45696 - chr2L 17319166 3` UTR CR45696 - chr2L 17319213 3` UTR CR45696 - chr2L_7_17315001 chr2L_17315001 RAL-109_75b 80 chr2L 18254540 18254831 chr2L 18254623 18254919 4 84 0.0 4.0 2.0 1.3 379 chr2L 18254540 intron CG42750 - chr2L 18254730 intron CG42750 - chr2L 18254919 intron CG42750 - chr2L_4_18250001 chr2L_18250001 RAL-109_75b 81 chr2L 18628463 18628486 chr2L 18628553 18628570 5 89 7.0 3.5 5.2 0.8 107 chr2L 18628463 intron MESR3 + chr2L 18628516 intron MESR3 + chr2L 18628570 intron MESR3 + chr2L_5_18625001 chr2L_18625001 RAL-109_75b 82 chr2L 18898396 18898421 chr2L 18898477 18898503 5 80 3.5 2.0 2.8 1.3 107 chr2L 18898396 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898503 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-109_75b 83 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744195 8.5 14.0 11.2 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-109_75b 84 chr2L 19147381 19147400 chr2L 19154405 19154435 297 4 7030 0.5 1.5 1.0 2.0 7054 chr2L 19147381 intron brat + chr2L 19150908 intron brat + chr2L 19154435 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-109_75b 85 chr2L 19199675 19199704 chr2L 19199744 19199774 4 68 7.0 5.0 6.0 0.6 99 chr2L 19199675 intron drl + chr2L 19199724 intron drl + chr2L 19199774 intron drl + chr2L_4_19195001 chr2L_19195001 RAL-109_75b 86 chr2L 19357550 19357567 chr2L 19357638 19357657 4 89 1.5 5.0 3.2 1.0 107 chr2L 19357550 intron dnt - chr2L 19357604 intron dnt - chr2L 19357657 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-109_75b 87 chr2L 19612963 19612984 chr2L 19613055 19613072 4 90 7.5 8.5 8.0 0.4 109 chr2L 19612963 intron Lar + chr2L 19613018 intron Lar + chr2L 19613072 intron Lar + chr2L_4_19610001 chr2L_19610001 RAL-109_75b 88 chr2L 19703536 19703569 chr2L 19712672 19712705 roo 5 9132 1.5 1.5 1.5 2.0 9169 chr2L 19703536 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-109_75b 89 chr2L 19911292 19911324 chr2L 19911380 19911389 10 77 1.0 1.5 1.2 4.5 97 chr2L 19911292 intron,3` UTR sick +,CR43097 - chr2L 19911340 intron,3` UTR sick +,CR43097 - chr2L 19911389 intron,3` UTR sick +,CR43097 - chr2L_10_19910001 chr2L_19910001 RAL-109_75b 90 chr2L 19964851 19964868 chr2L 19964927 19964952 4 83 8.0 9.0 8.5 0.4 101 chr2L 19964851 exon CG10680 + chr2L 19964902 exon CG10680 + chr2L 19964952 exon CG10680 + chr2L_4_19960001 chr2L_19960001 RAL-109_75b 91 chr2L 20041431 20041462 chr2L 20041515 20041547 4 85 11.0 13.0 12.0 0.3 116 chr2L 20041431 intron sNPF + chr2L 20041489 intron sNPF + chr2L 20041547 intron sNPF + chr2L_4_20040001 chr2L_20040001 RAL-109_75b 92 chr2L 20296515 20296541 chr2L 20296596 20296622 6 81 0.0 2.5 1.2 2.7 107 chr2L 20296515 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_6_20295001 chr2L_20295001 RAL-109_75b 93 chr2L 20352557 20352577 chr2L 20352650 20352669 4 92 6.0 3.0 4.5 0.7 112 chr2L 20352557 intron RtGEF + chr2L 20352613 intron RtGEF + chr2L 20352669 intron RtGEF + chr2L_4_20350001 chr2L_20350001 RAL-109_75b 94 chr2L 20372244 20372260 chr2L 20372471 20372482 pogo 5 228 1.0 2.0 1.5 2.0 238 chr2L 20372244 intergenic Ugt37a1 - chr2L 20372363 intergenic Ugt37a1 - chr2L 20372482 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-109_75b 95 chr2L 20393783 20393817 chr2L 20393949 20393983 8 163 5.0 8.0 6.5 1.1 200 chr2L 20393783 intron CG10947 - chr2L 20393883 intron CG10947 - chr2L 20393983 intron CG10947 - chr2L_8_20390001 chr2L_20390001 RAL-109_75b 96 chr2L 20568664 20568687 chr2L 20569053 20569077 X-element 5 390 1.0 1.5 1.2 2.3 413 chr2L 20568664 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569077 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-109_75b 97 chr2L 20572963 20572995 chr2L 20573048 20573051 4 78 5.0 7.5 6.2 0.6 88 chr2L 20572963 intron CR45347 + chr2L 20573007 intron CR45347 + chr2L 20573051 intron CR45347 + chr2L_4_20570001 chr2L_20570001 RAL-109_75b 98 chr2L 20576219 20576252 chr2L 20583685 20583709 blood 7 7465 2.0 1.0 1.5 2.8 7490 chr2L 20576219 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583709 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-109_75b 99 chr2L 21020275 21020303 chr2L 21023951 21023979 NOF 8 3672 2.5 2.5 2.5 2.3 3704 chr2L 21020275 intron CG42238 - chr2L 21022127 intron CG42238 - chr2L 21023979 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-109_75b 100 chr2L 21285636 21285666 chr2L 21285730 21285763 5 92 4.5 3.0 3.8 1.0 127 chr2L 21285636 intergenic Mio - chr2L 21285700 intergenic Mio - chr2L 21285763 intergenic Mio - chr2L_5_21285001 chr2L_21285001 RAL-109_75b 101 chr2L 21836392 21836427 chr2L 21836481 21836517 4 84 1.0 3.0 2.0 1.3 125 chr2L 21836392 3` UTR tsh + chr2L 21836454 3` UTR tsh + chr2L 21836517 3` UTR tsh + chr2L_4_21835001 chr2L_21835001 RAL-109_75b 102 chr2L 21859319 21859341 chr2L 21859399 21859420 6 78 3.0 0.5 1.8 2.1 101 chr2L 21859319 intron CR44917 + chr2L 21859370 intron CR44917 + chr2L 21859420 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-109_75b 103 chr2L 21981702 21981714 chr2L 21990848 21990854 roo 4 9154 0.0 0.5 0.2 3.3 9152 chr2L 21981702 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990854 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-109_75b 104 chr2L 22968568 22968591 chr2L 22968662 22968680 4 93 6.5 6.0 6.2 0.6 112 chr2L 22968568 intergenic not near genes chr2L 22968624 intergenic not near genes chr2L 22968680 intergenic not near genes chr2L_4_22965001 chr2L_22965001 RAL-109_75b 105 chr2L 23006503 23006528 chr2L 23007179 23007204 Osvaldo 5 676 7.5 4.0 5.8 0.7 701 chr2L 23006503 intron Cht3 - chr2L 23006854 intron Cht3 - chr2L 23007204 intron Cht3 - chr2L_5_23005001 chr2L_23005001 RAL-109_75b 106 chr2R 529337 529348 chr2R 537962 537973 Max-element 4 8624 1.0 2.0 1.5 1.6 8636 chr2R 529337 intron CG40378 + chr2R 533655 intron CG40378 + chr2R 537973 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-109_75b 107 chr2R 4622958 4622987 chr2R 4624117 4624146 1360 5 1158 3.0 8.0 5.5 0.8 1188 chr2R 4622958 intergenic CR44101 - chr2R 4623552 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-109_75b 108 chr2R 4624665 4624672 chr2R 4626551 4626555 Bica 6 1896 4.5 5.5 5.0 1.0 1890 chr2R 4624665 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626555 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-109_75b 109 chr2R 4916104 4916122 chr2R 4916182 4916206 5 80 2.0 1.0 1.5 2.0 102 chr2R 4916104 intergenic not near genes chr2R 4916155 intergenic not near genes chr2R 4916206 intergenic not near genes chr2R_5_4915001 chr2R_4915001 RAL-109_75b 110 chr2R 5621021 5621051 chr2R 5621158 5621184 7 136 7.0 7.0 7.0 0.9 163 chr2R 5621021 intergenic not near genes chr2R 5621102 intergenic not near genes chr2R 5621184 intergenic not near genes chr2R_7_5620001 chr2R_5620001 RAL-109_75b 111 chr2R 5861298 5861317 chr2R 5861412 5861412 4 110 7.0 6.0 6.5 0.5 114 chr2R 5861298 intergenic dpr12 + chr2R 5861355 intergenic not near genes chr2R 5861412 intergenic not near genes chr2R_4_5860001 chr2R_5860001 RAL-109_75b 112 chr2R 5868075 5868094 chr2R 5868192 5868214 4 119 6.5 5.5 6.0 0.6 139 chr2R 5868075 intergenic not near genes chr2R 5868144 intergenic not near genes chr2R 5868214 intergenic not near genes chr2R_4_5865001 chr2R_5865001 RAL-109_75b 113 chr2R 5869280 5869309 chr2R 5874356 5874362 flea 5 5068 1.5 2.5 2.0 1.7 5082 chr2R 5869280 intergenic not near genes chr2R 5871821 intergenic not near genes chr2R 5874362 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-109_75b 114 chr2R 5932817 5932827 chr2R 5932874 5932878 6 66 8.0 8.5 8.2 0.7 61 chr2R 5932817 intergenic not near genes chr2R 5932848 intergenic not near genes chr2R 5932878 intergenic not near genes chr2R_6_5930001 chr2R_5930001 RAL-109_75b 115 chr2R 6065781 6065783 chr2R 6065861 6065866 4 84 7.0 6.0 6.5 0.5 85 chr2R 6065781 intron CCHa2-R + chr2R 6065824 intron CCHa2-R + chr2R 6065866 intron CCHa2-R + chr2R_4_6065001 chr2R_6065001 RAL-109_75b 116 chr2R 6168195 6168227 chr2R 6168277 6168309 5 81 1.0 1.5 1.2 2.3 114 chr2R 6168195 intron EcR - chr2R 6168252 intron EcR - chr2R 6168309 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-109_75b 117 chr2R 6500957 6500993 chr2R 6501052 6501085 4 94 6.0 8.0 7.0 0.5 128 chr2R 6500957 intergenic not near genes chr2R 6501021 intergenic not near genes chr2R 6501085 intergenic not near genes chr2R_4_6500001 chr2R_6500001 RAL-109_75b 118 chr2R 6538384 6538409 chr2R 6538462 6538487 4 78 5.5 6.5 6.0 0.6 103 chr2R 6538384 intron jing + chr2R 6538436 intron jing + chr2R 6538487 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-109_75b 119 chr2R 7102647 7102668 chr2R 7102747 7102748 4 95 0.5 1.5 1.0 2.0 101 chr2R 7102647 intron esn + chr2R 7102698 intron esn + chr2R 7102748 intron esn + chr2R_4_7100001 chr2R_7100001 RAL-109_75b 120 chr2R 7235844 7235848 chr2R 7240905 7240940 jockey 4 5078 3.5 1.5 2.5 1.1 5096 chr2R 7235844 intergenic not near genes chr2R 7238392 intergenic not near genes chr2R 7240940 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-109_75b 121 chr2R 7310764 7310779 chr2R 7310846 7310861 5 82 6.5 3.0 4.8 0.9 97 chr2R 7310764 intergenic not near genes chr2R 7310812 intergenic not near genes chr2R 7310861 intergenic not near genes chr2R_5_7310001 chr2R_7310001 RAL-109_75b 122 chr2R 7459280 7459302 chr2R 7459368 7459390 5 88 0.5 0.0 0.2 4.2 110 chr2R 7459280 intergenic CG11141 -,Inos - chr2R 7459335 intergenic CG11141 -,Inos - chr2R 7459390 intergenic CG11141 - chr2R_5_7455001 chr2R_7455001 RAL-109_75b 123 chr2R 7629920 7629944 chr2R 7629996 7630001 4 71 1.5 3.0 2.2 1.2 81 chr2R 7629920 intron CG43340 + chr2R 7629960 intron CG43340 + chr2R 7630001 intron CG43340 + chr2R_4_7625001 chr2R_7625001 RAL-109_75b 124 chr2R 7869202 7869222 chr2R 7873971 7873984 Doc 6 4776 4.5 2.0 3.2 1.4 4782 chr2R 7869202 intron Dgk - chr2R 7871593 intron Dgk - chr2R 7873984 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-109_75b 125 chr2R 8015668 8015684 chr2R 8017672 8017707 4 2016 0.5 2.0 1.2 1.8 2039 chr2R 8015668 intergenic mir-4981 + chr2R 8016688 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-109_75b 126 chr2R 8028574 8028585 chr2R 8028655 8028666 4 81 4.5 3.5 4.0 0.8 92 chr2R 8028574 intergenic CR43724 - chr2R 8028620 intergenic CR43724 - chr2R 8028666 intergenic CR43724 - chr2R_4_8025001 chr2R_8025001 RAL-109_75b 127 chr2R 8089255 8089282 chr2R 8089341 8089350 4 80 1.0 0.5 0.8 2.2 95 chr2R 8089255 3` UTR sut2 + chr2R 8089302 intergenic sut2 +,sut3 + chr2R 8089350 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-109_75b 128 chr2R 8105935 8105961 chr2R 8106025 8106052 4 88 3.0 2.0 2.5 1.1 117 chr2R 8105935 5` UTR Cul4 - chr2R 8105994 intron Cul4 - chr2R 8106052 5` UTR Cul4 - chr2R_4_8105001 chr2R_8105001 RAL-109_75b 129 chr2R 8249577 8249589 chr2R 8249659 8249662 4 80 1.5 0.0 0.8 2.2 85 chr2R 8249577 5` UTR CG44439 - chr2R 8249620 intergenic CG44439 - chr2R 8249662 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-109_75b 130 chr2R 8330870 8330888 chr2R 8331351 8331374 roo 5 485 2.0 1.0 1.5 2.0 504 chr2R 8330870 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331374 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-109_75b 131 chr2R 8398214 8398225 chr2R 8402990 8403006 Doc 7 4779 5.0 3.0 4.0 1.4 4792 chr2R 8398214 intron CG2121 - chr2R 8400610 intron CG2121 - chr2R 8403006 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-109_75b 132 chr2R 8398230 8398244 chr2R 8402989 8403018 Doc 5 4768 2.5 3.0 2.8 1.3 4788 chr2R 8398230 intron CG2121 - chr2R 8400624 intron CG2121 - chr2R 8403018 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-109_75b 133 chr2R 8478222 8478235 chr2R 8478312 8478321 4 90 6.0 1.0 3.5 0.9 99 chr2R 8478222 intron mtt - chr2R 8478272 intron mtt - chr2R 8478321 intron mtt - chr2R_4_8475001 chr2R_8475001 RAL-109_75b 134 chr2R 8833437 8833453 chr2R 8833519 8833535 4 81 1.5 2.0 1.8 1.4 98 chr2R 8833437 intron sns + chr2R 8833486 intron sns + chr2R 8833535 intron sns + chr2R_4_8830001 chr2R_8830001 RAL-109_75b 135 chr2R 8933197 8933214 chr2R 8933286 8933306 4 90 4.0 1.0 2.5 1.1 109 chr2R 8933197 intergenic PAN2 +,CG13749 + chr2R 8933252 intergenic PAN2 +,CG13749 + chr2R 8933306 intergenic CG13749 +,PAN2 + chr2R_4_8930001 chr2R_8930001 RAL-109_75b 136 chr2R 9212700 9212720 chr2R 9213178 9213182 roo 4 472 1.0 6.5 3.8 0.8 482 chr2R 9212700 intergenic CR45309 + chr2R 9212941 intergenic CR45309 + chr2R 9213182 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-109_75b 137 chr2R 9368136 9368143 chr2R 9368209 9368218 4 75 2.0 1.0 1.5 1.6 82 chr2R 9368136 intron CG13954 - chr2R 9368177 intron CG13954 - chr2R 9368218 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-109_75b 138 chr2R 9378111 9378142 chr2R 9378193 9378224 9 78 3.5 0.0 1.8 3.2 113 chr2R 9378111 intron CG13954 - chr2R 9378168 intron CG13954 - chr2R 9378224 intron CG13954 - chr2R_9_9375001 chr2R_9375001 RAL-109_75b 139 chr2R 9407832 9407861 chr2R 9407923 9407954 7 92 1.0 2.0 1.5 2.8 122 chr2R 9407832 intron wun - chr2R 9407893 intron wun - chr2R 9407954 intron wun - chr2R_7_9405001 chr2R_9405001 RAL-109_75b 140 chr2R 9765152 9765178 chr2R 9765225 9765230 6 72 3.5 4.0 3.8 1.2 78 chr2R 9765152 exon trpl + chr2R 9765191 exon trpl + chr2R 9765230 exon trpl + chr2R_6_9765001 chr2R_9765001 RAL-109_75b 141 chr2R 9790081 9790107 chr2R 9790157 9790184 4 77 2.5 5.0 3.8 0.8 103 chr2R 9790081 intron,5` UTR CG1688 -,CR44208 + chr2R 9790132 intron,5` UTR CG1688 -,CR44208 + chr2R 9790184 intron,5` UTR CG1688 -,CR44208 + chr2R_4_9790001 chr2R_9790001 RAL-109_75b 142 chr2R 9871038 9871061 chr2R 9871524 9871547 roo 4 485 4.5 1.0 2.8 1.1 509 chr2R 9871038 intron cbx - chr2R 9871292 intron cbx - chr2R 9871547 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-109_75b 143 chr2R 10005849 10005860 chr2R 10007014 10007022 1360 4 1164 3.5 5.0 4.2 0.8 1173 chr2R 10005849 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007022 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-109_75b 144 chr2R 10132201 10132221 chr2R 10132280 10132298 4 79 0.5 2.5 1.5 1.6 97 chr2R 10132201 intron gem + chr2R 10132250 intron gem + chr2R 10132298 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-109_75b 145 chr2R 10266499 10266531 chr2R 10266590 10266597 5 79 2.5 3.0 2.8 1.3 98 chr2R 10266499 intron CG12910 + chr2R 10266548 intron CG12910 + chr2R 10266597 intron CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-109_75b 146 chr2R 10352678 10352704 chr2R 10352755 10352780 5 76 0.5 0.5 0.5 3.3 102 chr2R 10352678 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352729 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352780 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-109_75b 147 chr2R 10387980 10388000 chr2R 10388076 10388082 4 93 0.0 2.5 1.2 1.8 102 chr2R 10387980 intron CG42732 - chr2R 10388031 intron CG42732 - chr2R 10388082 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-109_75b 148 chr2R 10577161 10577184 chr2R 10577242 10577264 4 80 4.0 2.0 3.0 1.0 103 chr2R 10577161 intron psq + chr2R 10577212 intron psq + chr2R 10577264 intron psq + chr2R_4_10575001 chr2R_10575001 RAL-109_75b 149 chr2R 10948041 10948057 chr2R 10955583 10955590 17.6 6 7541 1.0 4.5 2.8 1.6 7549 chr2R 10948041 intergenic not near genes chr2R 10951816 intergenic not near genes chr2R 10955590 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-109_75b 150 chr2R 11009813 11009842 chr2R 11018987 11019016 roo 8 9171 1.0 1.0 1.0 4.0 9203 chr2R 11009813 intron luna - chr2R 11014414 intron luna - chr2R 11019016 intron luna - chr2R_8_11010001 chr2R_11010001 RAL-109_75b 151 chr2R 11207819 11207846 chr2R 11208012 11208012 BS 4 184 4.0 1.0 2.5 1.1 193 chr2R 11207819 intron shn + chr2R 11207916 intron shn + chr2R 11208012 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-109_75b 152 chr2R 11419864 11419886 chr2R 11419994 11420016 8 127 5.5 2.5 4.0 1.6 152 chr2R 11419864 intron Drip - chr2R 11419940 intron Drip - chr2R 11420016 intron Drip - chr2R_8_11415001 chr2R_11415001 RAL-109_75b 153 chr2R 11932575 11932587 chr2R 11932685 11932704 4 114 1.0 0.5 0.8 2.2 129 chr2R 11932575 intergenic not near genes chr2R 11932640 intergenic not near genes chr2R 11932704 intergenic not near genes chr2R_4_11930001 chr2R_11930001 RAL-109_75b 154 chr2R 12146470 12146503 chr2R 12147590 12147603 4 1115 11.0 22.0 16.5 0.2 1133 chr2R 12146470 intron,3` UTR Hen1 +,CG8878 - chr2R 12147036 intron,exon Hen1 +,CG8878 - chr2R 12147603 intron,exon Hen1 +,CG8878 - chr2R_4_12145001 chr2R_12145001 RAL-109_75b 155 chr2R 12187471 12187508 chr2R 12190087 12190124 32 2625 134.0 92.5 113.2 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_32_12185001 chr2R_12185001 RAL-109_75b 156 chr2R 12301900 12301908 chr2R 12301956 12301971 6 65 2.0 4.5 3.2 1.4 71 chr2R 12301900 intron CG8850 - chr2R 12301936 intron CG8850 - chr2R 12301971 intron CG8850 - chr2R_6_12300001 chr2R_12300001 RAL-109_75b 157 chr2R 12481139 12481145 chr2R 12482939 12482947 roo 4 1802 5.5 2.0 3.8 0.8 1808 chr2R 12481139 exon Dh44-R2 + chr2R 12482043 intron Dh44-R2 + chr2R 12482947 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-109_75b 158 chr2R 12501708 12501722 chr2R 12503855 12503884 Rt1c 5 2158 3.0 4.0 3.5 1.1 2176 chr2R 12501708 intron fdl - chr2R 12502796 intron fdl - chr2R 12503884 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-109_75b 159 chr2R 12789301 12789327 chr2R 12797663 12797690 roo 4 8362 1.5 1.5 1.5 1.6 8389 chr2R 12789301 intron,3` UTR sca +,CR45137 - chr2R 12793496 intron,intron sca +,CR45137 - chr2R 12797690 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-109_75b 160 chr2R 12973437 12973445 chr2R 12973523 12973532 4 87 6.0 4.5 5.2 0.6 95 chr2R 12973437 intron Psc - chr2R 12973484 intron Psc - chr2R 12973532 intron Psc - chr2R_4_12970001 chr2R_12970001 RAL-109_75b 161 chr2R 13089763 13089783 chr2R 13089873 13089890 4 109 2.0 4.5 3.2 1.0 127 chr2R 13089763 intergenic not near genes chr2R 13089826 intergenic not near genes chr2R 13089890 intergenic not near genes chr2R_4_13085001 chr2R_13085001 RAL-109_75b 162 chr2R 13136843 13136856 chr2R 13141641 13141654 Doc 4 4798 8.0 1.5 4.8 0.7 4811 chr2R 13136843 exon Cap-G + chr2R 13139248 intron Cap-G + chr2R 13141654 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-109_75b 163 chr2R 13652707 13652720 chr2R 13652786 13652799 4 78 3.0 1.0 2.0 1.3 92 chr2R 13652707 intron fas + chr2R 13652753 intron fas + chr2R 13652799 intron fas + chr2R_4_13650001 chr2R_13650001 RAL-109_75b 164 chr2R 13653498 13653515 chr2R 13653756 13653774 4 258 4.0 8.0 6.0 0.6 276 chr2R 13653498 intron fas + chr2R 13653636 intron fas + chr2R 13653774 intron fas + chr2R_4_13650001 chr2R_13650001 RAL-109_75b 165 chr2R 13768996 13769005 chr2R 13769095 13769104 4 98 2.0 3.5 2.8 1.1 108 chr2R 13768996 intergenic not near genes chr2R 13769050 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-109_75b 166 chr2R 14014815 14014845 chr2R 14015049 14015079 6 234 2.0 4.5 3.2 1.4 264 chr2R 14014815 intron mam + chr2R 14014947 intron mam + chr2R 14015079 intron mam + chr2R_6_14010001 chr2R_14010001 RAL-109_75b 167 chr2R 14054584 14054607 chr2R 14054671 14054685 8 84 3.0 4.0 3.5 1.8 101 chr2R 14054584 intron mam + chr2R 14054634 intron mam + chr2R 14054685 intron mam + chr2R_8_14050001 chr2R_14050001 RAL-109_75b 168 chr2R 14467317 14467322 chr2R 14476475 14476480 roo 4 9158 5.0 4.5 4.8 0.7 9163 chr2R 14467317 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476480 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-109_75b 169 chr2R 14530751 14530772 chr2R 14530833 14530853 6 82 1.5 2.0 1.8 2.1 102 chr2R 14530751 intron ttv + chr2R 14530802 intron ttv + chr2R 14530853 intron ttv + chr2R_6_14530001 chr2R_14530001 RAL-109_75b 170 chr2R 14653882 14653907 chr2R 14653967 14653971 6 76 5.0 0.5 2.8 1.6 89 chr2R 14653882 intergenic not near genes chr2R 14653926 intergenic not near genes chr2R 14653971 intergenic not near genes chr2R_6_14650001 chr2R_14650001 RAL-109_75b 171 chr2R 14816108 14816135 chr2R 14816204 14816230 5 96 4.5 4.0 4.2 1.0 122 chr2R 14816108 intergenic not near genes chr2R 14816169 intergenic not near genes chr2R 14816230 intergenic not near genes chr2R_5_14815001 chr2R_14815001 RAL-109_75b 172 chr2R 14922153 14922168 chr2R 14922228 14922241 4 75 2.0 3.5 2.8 1.1 88 chr2R 14922153 intron CG10249 - chr2R 14922197 intron CG10249 - chr2R 14922241 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-109_75b 173 chr2R 15015459 15015483 chr2R 15022883 15022907 mdg1 6 7424 3.0 1.0 2.0 2.0 7448 chr2R 15015459 intron hbs + chr2R 15019183 intron hbs + chr2R 15022907 intron hbs + chr2R_6_15015001 chr2R_15015001 RAL-109_75b 174 chr2R 15065627 15065650 chr2R 15065692 15065728 4 68 1.5 2.5 2.0 1.3 101 chr2R 15065627 intergenic not near genes chr2R 15065678 intergenic not near genes chr2R 15065728 intergenic not near genes chr2R_4_15065001 chr2R_15065001 RAL-109_75b 175 chr2R 15196097 15196124 chr2R 15196193 15196220 4 96 2.0 1.5 1.8 1.4 123 chr2R 15196097 intergenic not near genes chr2R 15196158 intergenic not near genes chr2R 15196220 intergenic not near genes chr2R_4_15195001 chr2R_15195001 RAL-109_75b 176 chr2R 15700257 15700272 chr2R 15700370 15700387 4 114 1.0 3.5 2.2 1.2 130 chr2R 15700257 intron,5` UTR CG30080 -,CG42662 - chr2R 15700322 intron,5` UTR CG30080 -,CG42662 - chr2R 15700387 intron,5` UTR CG30080 -,CG42662 - chr2R_4_15700001 chr2R_15700001 RAL-109_75b 177 chr2R 15747823 15747846 chr2R 15747911 15747932 7 87 3.0 2.0 2.5 2.0 109 chr2R 15747823 intron CG30089 + chr2R 15747878 intron CG30089 + chr2R 15747932 intron CG30089 + chr2R_7_15745001 chr2R_15745001 RAL-109_75b 178 chr2R 15772626 15772656 chr2R 15772707 15772709 5 74 2.0 3.0 2.5 1.4 83 chr2R 15772626 intron Zasp52 - chr2R 15772668 intron Zasp52 - chr2R 15772709 intron Zasp52 - chr2R_5_15770001 chr2R_15770001 RAL-109_75b 179 chr2R 15902883 15902910 chr2R 15902959 15902977 4 73 1.5 5.0 3.2 1.0 94 chr2R 15902883 intron sli - chr2R 15902930 intron sli - chr2R 15902977 intron sli - chr2R_4_15900001 chr2R_15900001 RAL-109_75b 180 chr2R 16893785 16893803 chr2R 16893867 16893867 4 74 2.5 1.5 2.0 1.3 82 chr2R 16893785 intron CG8910 - chr2R 16893826 intron CG8910 - chr2R 16893867 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-109_75b 181 chr2R 16931492 16931523 chr2R 16931674 16931705 4 182 3.5 2.0 2.8 1.1 213 chr2R 16931492 intron Pkc53E + chr2R 16931598 intron Pkc53E + chr2R 16931705 intron Pkc53E + chr2R_4_16930001 chr2R_16930001 RAL-109_75b 182 chr2R 17236506 17236539 chr2R 17241710 17241717 copia 6 5199 1.5 3.0 2.2 1.9 5211 chr2R 17236506 intron mbl + chr2R 17239112 intron mbl + chr2R 17241717 intron mbl + chr2R_6_17235001 chr2R_17235001 RAL-109_75b 183 chr2R 17389269 17389299 chr2R 17389360 17389370 5 83 3.0 5.5 4.2 1.0 101 chr2R 17389269 intergenic CR44344 - chr2R 17389320 intergenic CR44344 - chr2R 17389370 intergenic CR44344 - chr2R_5_17385001 chr2R_17385001 RAL-109_75b 184 chr2R 17669799 17669813 chr2R 17669890 17669906 4 94 2.5 2.5 2.5 1.1 107 chr2R 17669799 exon CG30108 + chr2R 17669852 3` UTR CG30108 + chr2R 17669906 3` UTR CG30108 + chr2R_4_17665001 chr2R_17665001 RAL-109_75b 185 chr2R 18528198 18528214 chr2R 18528282 18528299 4 84 3.5 1.0 2.2 1.2 101 chr2R 18528198 intron CG10924 + chr2R 18528248 intron CG10924 + chr2R 18528299 intron CG10924 + chr2R_4_18525001 chr2R_18525001 RAL-109_75b 186 chr2R 18575814 18575826 chr2R 18581983 18582014 3S18 6 6177 3.0 5.0 4.0 1.2 6200 chr2R 18575814 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582014 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-109_75b 187 chr2R 18590873 18590900 chr2R 18600017 18600049 roo 6 9143 1.5 2.0 1.8 2.1 9176 chr2R 18590873 intron GEFmeso - chr2R 18595461 intron GEFmeso - chr2R 18600049 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-109_75b 188 chr2R 19619010 19619022 chr2R 19619162 19619176 4 151 2.0 1.5 1.8 1.4 166 chr2R 19619010 intron sm - chr2R 19619093 intron sm - chr2R 19619176 intron sm - chr2R_4_19615001 chr2R_19615001 RAL-109_75b 189 chr2R 20523048 20523068 chr2R 20523148 20523178 11 107 2.0 3.5 2.8 2.9 130 chr2R 20523048 intergenic not near genes chr2R 20523113 intergenic not near genes chr2R 20523178 intergenic not near genes chr2R_11_20520001 chr2R_20520001 RAL-109_75b 190 chr2R 20739441 20739476 chr2R 20744209 20744234 F-element 6 4759 1.5 4.5 3.0 1.5 4793 chr2R 20739441 intron dpr + chr2R 20741838 intron dpr + chr2R 20744234 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-109_75b 191 chr2R 21040868 21040892 chr2R 21040942 21040946 5 61 0.0 2.0 1.0 2.5 78 chr2R 21040868 intergenic not near genes chr2R 21040907 intergenic not near genes chr2R 21040946 intergenic not near genes chr2R_5_21040001 chr2R_21040001 RAL-109_75b 192 chr2R 21700163 21700183 chr2R 21700246 21700265 4 82 4.0 2.5 3.2 1.0 102 chr2R 21700163 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700265 intron HmgZ - chr2R_4_21700001 chr2R_21700001 RAL-109_75b 193 chr2R 21709159 21709178 chr2R 21709307 21709326 4 148 1.5 0.0 0.8 2.2 167 chr2R 21709159 intron,3` UTR HmgD +,CR44749 - chr2R 21709242 intron,3` UTR HmgD +,CR44749 - chr2R 21709326 intron,3` UTR HmgD +,CR44749 - chr2R_4_21705001 chr2R_21705001 RAL-109_75b 194 chr2R 22499857 22499886 chr2R 22499933 22499962 6 74 0.5 3.0 1.8 2.1 105 chr2R 22499857 intron px - chr2R 22499910 intron px - chr2R 22499962 intron px - chr2R_6_22495001 chr2R_22495001 RAL-109_75b 195 chr2R 22659505 22659525 chr2R 22659583 22659602 6 76 4.0 2.0 3.0 1.5 97 chr2R 22659505 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659554 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659602 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R_6_22655001 chr2R_22655001 RAL-109_75b 196 chr2R 22971498 22971528 chr2R 22971575 22971601 6 72 0.5 2.0 1.2 2.7 103 chr2R 22971498 intergenic not near genes chr2R 22971550 intergenic not near genes chr2R 22971601 intergenic not near genes chr2R_6_22970001 chr2R_22970001 RAL-109_75b 197 chr2R 23522414 23522447 chr2R 23522493 23522497 8 67 4.5 4.5 4.5 1.5 83 chr2R 23522414 intron RabX1 - chr2R 23522456 intron RabX1 - chr2R 23522497 intron RabX1 - chr2R_8_23520001 chr2R_23520001 RAL-109_75b 198 chr2R 23674183 23674211 chr2R 23674263 23674291 7 77 1.5 4.5 3.0 1.8 108 chr2R 23674183 intron Pde8 + chr2R 23674237 intron Pde8 + chr2R 23674291 exon Pde8 + chr2R_7_23670001 chr2R_23670001 RAL-109_75b 199 chr2R 23726228 23726252 chr2R 23726318 23726322 4 85 2.0 3.5 2.8 1.1 94 chr2R 23726228 intron Sesn + chr2R 23726275 intron Sesn + chr2R 23726322 intron Sesn + chr2R_4_23725001 chr2R_23725001 RAL-109_75b 200 chr2R 24025717 24025740 chr2R 24025813 24025842 9 98 2.5 0.0 1.2 4.1 125 chr2R 24025717 3` UTR,3` UTR CR45350 -,Adk2 + chr2R 24025780 3` UTR Adk2 + chr2R 24025842 3` UTR Adk2 + chr2R_9_24025001 chr2R_24025001 RAL-109_75b 201 chr2R 24031388 24031409 chr2R 24031472 24031493 5 84 1.5 0.5 1.0 2.5 105 chr2R 24031388 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031493 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-109_75b 202 chr2R 24320186 24320201 chr2R 24320263 24320277 4 76 1.5 5.0 3.2 1.0 91 chr2R 24320186 intergenic not near genes chr2R 24320232 intergenic not near genes chr2R 24320277 intergenic not near genes chr2R_4_24320001 chr2R_24320001 RAL-109_75b 203 chr2R 24353427 24353457 chr2R 24361789 24361794 roo 7 8358 0.5 2.5 1.5 2.8 8367 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357610 intron,intron bs +,CR44811 - chr2R 24361794 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-109_75b 204 chr2R 24520611 24520645 chr2R 24520694 24520728 10 77 2.0 3.0 2.5 2.9 117 chr2R 24520611 exon Ir60d + chr2R 24520670 exon Ir60d + chr2R 24520728 exon Ir60d + chr2R_10_24520001 chr2R_24520001 RAL-109_75b 205 chr2R 24553633 24553666 chr2R 24553727 24553736 9 81 3.0 2.0 2.5 2.6 103 chr2R 24553633 intron,intron CG4622 -,ITP + chr2R 24553684 intron,intron CG4622 -,ITP + chr2R 24553736 intron,intron CG4622 -,ITP + chr2R_9_24550001 chr2R_24550001 RAL-109_75b 206 chr2R 24647593 24647615 chr2R 24655150 24655172 412 8 7556 3.0 2.0 2.5 2.3 7579 chr2R 24647593 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_8_24650001 chr2R_24650001 RAL-109_75b 207 chr2R 24727887 24727904 chr2R 24735394 24735411 mdg1 4 7508 5.5 4.0 4.8 0.7 7524 chr2R 24727887 intron Mid1 - chr2R 24731649 intron Mid1 - chr2R 24735411 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-109_75b 208 chr2R 24727906 24727918 chr2R 24735391 24735415 mdg1 4 7486 2.5 3.5 3.0 1.0 7509 chr2R 24727906 intron Mid1 - chr2R 24731660 intron Mid1 - chr2R 24735415 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-109_75b 209 chr2R 24763610 24763644 chr2R 24765586 24765620 G2 8 1975 1.5 3.0 2.2 2.5 2010 chr2R 24763610 exon CG3894 + chr2R 24764615 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-109_75b 210 chr2R 25014557 25014568 chr2R 25014618 25014633 4 67 4.0 2.0 3.0 1.0 76 chr2R 25014557 intron uzip + chr2R 25014595 intron uzip + chr2R 25014633 intron uzip + chr2R_4_25010001 chr2R_25010001 RAL-109_75b 211 chr3L 94400 94417 chr3L 94513 94531 6 112 4.5 6.0 5.2 1.0 131 chr3L 94400 intergenic not near genes chr3L 94466 intergenic not near genes chr3L 94531 intergenic not near genes chr3L_6_90001 chr3L_90001 RAL-109_75b 212 chr3L 155783 155813 chr3L 155860 155890 6 71 0.0 0.0 0.0 6.0 107 chr3L 155783 intron p130CAS + chr3L 155836 intron p130CAS + chr3L 155890 intron p130CAS + chr3L_6_155001 chr3L_155001 RAL-109_75b 213 chr3L 402689 402716 chr3L 409742 409769 297 9 7049 4.0 3.0 3.5 2.0 7080 chr3L 402689 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-109_75b 214 chr3L 421053 421086 chr3L 421149 421153 7 87 1.5 1.5 1.5 2.8 100 chr3L 421053 intergenic not near genes chr3L 421103 intergenic not near genes chr3L 421153 intergenic not near genes chr3L_7_420001 chr3L_420001 RAL-109_75b 215 chr3L 494594 494620 chr3L 494676 494702 7 81 3.0 0.0 1.5 2.8 108 chr3L 494594 intron klar - chr3L 494648 intron klar - chr3L 494702 intron klar - chr3L_7_490001 chr3L_490001 RAL-109_75b 216 chr3L 514278 514301 chr3L 514355 514364 6 74 1.0 3.0 2.0 2.0 86 chr3L 514278 intron klar - chr3L 514321 intron klar - chr3L 514364 intron klar - chr3L_6_510001 chr3L_510001 RAL-109_75b 217 chr3L 563973 563999 chr3L 564149 564178 6 178 3.5 1.0 2.2 1.9 205 chr3L 563973 intron hipk + chr3L 564076 intron hipk + chr3L 564178 intron hipk + chr3L_6_560001 chr3L_560001 RAL-109_75b 218 chr3L 668816 668828 chr3L 668922 668934 4 105 10.5 4.0 7.2 0.5 118 chr3L 668816 intergenic not near genes chr3L 668875 intergenic not near genes chr3L 668934 intergenic not near genes chr3L_4_665001 chr3L_665001 RAL-109_75b 219 chr3L 668829 668848 chr3L 668920 668933 6 97 5.0 4.0 4.5 1.1 104 chr3L 668829 intergenic not near genes chr3L 668881 intergenic not near genes chr3L 668933 intergenic not near genes chr3L_6_665001 chr3L_665001 RAL-109_75b 220 chr3L 767820 767847 chr3L 767908 767935 6 87 1.5 2.5 2.0 2.0 115 chr3L 767820 intergenic not near genes chr3L 767878 intergenic not near genes chr3L 767935 intergenic not near genes chr3L_6_765001 chr3L_765001 RAL-109_75b 221 chr3L 858004 858026 chr3L 866485 866499 Tirant 4 8474 2.0 1.5 1.8 1.4 8495 chr3L 858004 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866499 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-109_75b 222 chr3L 939770 939797 chr3L 940891 940906 jockey 10 1118 4.0 1.0 2.5 2.9 1136 chr3L 939770 intron Glut1 + chr3L 940338 intron Glut1 + chr3L 940906 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-109_75b 223 chr3L 1154131 1154138 chr3L 1163281 1163288 roo 5 9150 3.0 0.0 1.5 2.0 9157 chr3L 1154131 intron bab2 - chr3L 1158710 intron bab2 - chr3L 1163288 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-109_75b 224 chr3L 1219601 1219614 chr3L 1227334 1227346 412 4 7730 3.0 5.5 4.2 0.8 7745 chr3L 1219601 intron mwh + chr3L 1223474 intron mwh + chr3L 1227346 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-109_75b 225 chr3L 1219617 1219624 chr3L 1227328 1227334 412 4 7717 3.0 5.5 4.2 0.8 7717 chr3L 1219617 intron mwh + chr3L 1223476 intron mwh + chr3L 1227334 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-109_75b 226 chr3L 1315022 1315055 chr3L 1315098 1315103 12 70 25.0 20.5 22.8 0.5 81 chr3L 1315022 exon CG9153 + chr3L 1315062 exon CG9153 + chr3L 1315103 exon CG9153 + chr3L_12_1315001 chr3L_1315001 RAL-109_75b 227 chr3L 1310991 1311013 chr3L 1315851 1315875 5 4861 20.5 25.0 22.8 0.2 4884 chr3L 1310991 exon CG2469 + chr3L 1313433 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_5_1310001 chr3L_1310001 RAL-109_75b 228 chr3L 1374439 1374462 chr3L 1374511 1374511 5 69 1.0 1.0 1.0 2.5 72 chr3L 1374439 intron,intron Ptp61F -,ru + chr3L 1374475 intron,intron Ptp61F -,ru + chr3L 1374511 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-109_75b 229 chr3L 1502007 1502021 chr3L 1502079 1502102 4 78 1.5 2.5 2.0 1.3 95 chr3L 1502007 intron pUf68 - chr3L 1502054 intron pUf68 - chr3L 1502102 intron pUf68 - chr3L_4_1500001 chr3L_1500001 RAL-109_75b 230 chr3L 1506000 1506033 chr3L 1513597 1513630 17.6 5 7597 1.0 3.0 2.0 1.7 7630 chr3L 1506000 intron,intron Psa +,cue - chr3L 1509815 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_5_1505001 chr3L_1505001 RAL-109_75b 231 chr3L 2025523 2025546 chr3L 2025601 2025606 6 71 1.0 4.0 2.5 1.7 83 chr3L 2025523 intergenic not near genes chr3L 2025564 intergenic not near genes chr3L 2025606 intergenic not near genes chr3L_6_2025001 chr3L_2025001 RAL-109_75b 232 chr3L 2207329 2207354 chr3L 2207539 2207546 6 205 3.0 2.5 2.8 1.6 217 chr3L 2207329 intergenic not near genes chr3L 2207438 intergenic not near genes chr3L 2207546 intergenic not near genes chr3L_6_2205001 chr3L_2205001 RAL-109_75b 233 chr3L 2334931 2334949 chr3L 2335086 2335104 5 155 27.5 25.0 26.2 0.2 173 chr3L 2334931 intron MsR1 + chr3L 2335018 intron MsR1 + chr3L 2335104 intron MsR1 + chr3L_5_2335001 chr3L_2335001 RAL-109_75b 234 chr3L 2334929 2334960 chr3L 2335106 2335115 8 162 29.5 24.5 27.0 0.3 186 chr3L 2334929 intron MsR1 + chr3L 2335022 intron MsR1 + chr3L 2335115 intron MsR1 + chr3L_8_2335001 chr3L_2335001 RAL-109_75b 235 chr3L 2480301 2480326 chr3L 2480401 2480424 4 99 4.0 3.0 3.5 0.9 123 chr3L 2480301 intron CG45186 + chr3L 2480362 intron CG45186 + chr3L 2480424 intron CG45186 + chr3L_4_2480001 chr3L_2480001 RAL-109_75b 236 chr3L 2683942 2683978 chr3L 2684018 2684025 4 69 1.0 0.0 0.5 2.7 83 chr3L 2683942 intron Fife - chr3L 2683984 intron Fife - chr3L 2684025 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-109_75b 237 chr3L 2927837 2927854 chr3L 2936114 2936130 Tirant 5 8276 1.0 1.0 1.0 2.5 8293 chr3L 2927837 intron Shab + chr3L 2931984 intron Shab + chr3L 2936130 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-109_75b 238 chr3L 3178731 3178746 chr3L 3178814 3178829 5 82 3.0 0.0 1.5 2.0 98 chr3L 3178731 intergenic CG14964 -,Girdin + chr3L 3178780 intergenic Girdin +,CG14964 - chr3L 3178829 intergenic Girdin +,CG14964 - chr3L_5_3175001 chr3L_3175001 RAL-109_75b 239 chr3L 3259629 3259819 chr3L 3259724 3259916 4 94 0.0 2.5 1.2 1.8 287 chr3L 3259629 intron ckd + chr3L 3259772 intron ckd + chr3L 3259916 intron ckd + chr3L_4_3255001 chr3L_3255001 RAL-109_75b 240 chr3L 3281463 3281472 chr3L 3281942 3281946 Doc 4 486 1.0 7.0 4.0 0.8 483 chr3L 3281463 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281946 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-109_75b 241 chr3L 3388589 3388616 chr3L 3388678 3388709 5 81 3.5 2.5 3.0 1.2 120 chr3L 3388589 intergenic not near genes chr3L 3388649 intergenic not near genes chr3L 3388709 intergenic not near genes chr3L_5_3385001 chr3L_3385001 RAL-109_75b 242 chr3L 3475086 3475103 chr3L 3475530 3475547 jockey 6 443 2.5 3.0 2.8 1.6 461 chr3L 3475086 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475547 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-109_75b 243 chr3L 3601299 3601323 chr3L 3606610 3606614 copia 4 5303 1.5 2.5 2.0 1.3 5315 chr3L 3601299 intron Eip63E + chr3L 3603956 intron Eip63E + chr3L 3606614 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-109_75b 244 chr3L 3953562 3953590 chr3L 3953902 3953907 6 336 1.5 1.5 1.5 2.4 345 chr3L 3953562 intergenic not near genes chr3L 3953734 intergenic not near genes chr3L 3953907 intergenic CG12605 - chr3L_6_3950001 chr3L_3950001 RAL-109_75b 245 chr3L 4726443 4726461 chr3L 4726524 4726542 4 79 4.0 1.5 2.8 1.1 99 chr3L 4726443 intron RhoGEF64C + chr3L 4726492 intron RhoGEF64C + chr3L 4726542 intron RhoGEF64C + chr3L_4_4725001 chr3L_4725001 RAL-109_75b 246 chr3L 4839551 4839578 chr3L 4839628 4839655 6 74 1.5 1.0 1.2 2.7 104 chr3L 4839551 intron CG13707 - chr3L 4839603 intron CG13707 - chr3L 4839655 intron CG13707 - chr3L_6_4835001 chr3L_4835001 RAL-109_75b 247 chr3L 4967144 4967171 chr3L 4967250 4967278 7 105 2.5 2.5 2.5 2.0 134 chr3L 4967144 intron Con - chr3L 4967211 intron Con - chr3L 4967278 intron Con - chr3L_7_4965001 chr3L_4965001 RAL-109_75b 248 chr3L 5265353 5265378 chr3L 5265456 5265459 7 101 6.5 2.5 4.5 1.3 106 chr3L 5265353 intron shep - chr3L 5265406 intron shep - chr3L 5265459 intron shep - chr3L_7_5265001 chr3L_5265001 RAL-109_75b 249 chr3L 5482942 5483084 chr3L 5483151 5483203 5 137 2.5 1.0 1.8 1.8 261 chr3L 5482942 exon CG4835 + chr3L 5483072 exon CG4835 + chr3L 5483203 exon CG4835 + chr3L_5_5480001 chr3L_5480001 RAL-109_75b 250 chr3L 5926325 5926335 chr3L 5926509 5926510 BS 4 183 5.0 1.0 3.0 1.0 185 chr3L 5926325 intron Vap-33B + chr3L 5926418 intron Vap-33B + chr3L 5926510 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-109_75b 251 chr3L 5980589 5980613 chr3L 5980676 5980679 5 83 2.0 2.0 2.0 1.7 90 chr3L 5980589 intergenic not near genes chr3L 5980634 intergenic not near genes chr3L 5980679 intergenic not near genes chr3L_5_5980001 chr3L_5980001 RAL-109_75b 252 chr3L 6063942 6063966 chr3L 6064026 6064050 4 84 2.0 1.5 1.8 1.4 108 chr3L 6063942 intergenic not near genes chr3L 6063996 intergenic not near genes chr3L 6064050 intergenic not near genes chr3L_4_6060001 chr3L_6060001 RAL-109_75b 253 chr3L 6162375 6162385 chr3L 6162434 6162459 4 70 0.0 1.5 0.8 2.2 84 chr3L 6162375 intergenic CR45744 - chr3L 6162417 intergenic CR45744 - chr3L 6162459 intergenic CR45744 - chr3L_4_6160001 chr3L_6160001 RAL-109_75b 254 chr3L 6537320 6537335 chr3L 6537394 6537426 7 87 4.5 2.5 3.5 1.6 106 chr3L 6537320 intron sfl + chr3L 6537373 intron sfl + chr3L 6537426 intron sfl + chr3L_7_6535001 chr3L_6535001 RAL-109_75b 255 chr3L 6610203 6610220 chr3L 6610307 6610325 4 104 4.0 5.0 4.5 0.7 122 chr3L 6610203 intron CG8398 + chr3L 6610264 intron CG8398 + chr3L 6610325 intron CG8398 + chr3L_4_6610001 chr3L_6610001 RAL-109_75b 256 chr3L 6619265 6619299 chr3L 6619428 6619462 7 160 0.5 2.0 1.2 3.2 197 chr3L 6619265 intergenic CG8398 + chr3L 6619364 intergenic CG8398 + chr3L 6619462 intergenic CG8398 + chr3L_7_6615001 chr3L_6615001 RAL-109_75b 257 chr3L 6643150 6643172 chr3L 6643238 6643259 4 87 2.0 2.0 2.0 1.3 109 chr3L 6643150 intergenic CR45239 + chr3L 6643204 intergenic CR45239 + chr3L 6643259 intergenic CR45239 + chr3L_4_6640001 chr3L_6640001 RAL-109_75b 258 chr3L 6942067 6942084 chr3L 6942166 6942183 5 99 2.5 3.0 2.8 1.3 116 chr3L 6942067 intergenic not near genes chr3L 6942125 intergenic not near genes chr3L 6942183 intergenic not near genes chr3L_5_6940001 chr3L_6940001 RAL-109_75b 259 chr3L 7022034 7022050 chr3L 7022234 7022236 4 200 0.0 1.0 0.5 2.7 202 chr3L 7022034 intron Mp + chr3L 7022135 intron Mp + chr3L 7022236 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-109_75b 260 chr3L 7591161 7591179 chr3L 7591235 7591270 7 84 4.5 0.5 2.5 2.0 109 chr3L 7591161 intergenic CG7716 - chr3L 7591216 intergenic CG7716 - chr3L 7591270 intergenic CG7716 - chr3L_7_7590001 chr3L_7590001 RAL-109_75b 261 chr3L 7691839 7691861 chr3L 7691931 7691943 4 90 1.0 1.5 1.2 1.8 104 chr3L 7691839 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691891 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691943 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_4_7690001 chr3L_7690001 RAL-109_75b 262 chr3L 7886536 7886546 chr3L 7889031 7889042 Stalker4 4 2507 0.0 1.5 0.8 2.2 2506 chr3L 7886536 intron CG32365 + chr3L 7887789 intron CG32365 + chr3L 7889042 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-109_75b 263 chr3L 9013690 9013692 chr3L 18417066 18417066 5 9403375 21.0 14.0 17.5 0.3 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-109_75b 264 chr3L 9076936 9076957 chr3L 9084488 9084516 412 4 7558 4.5 2.5 3.5 0.9 7580 chr3L 9076936 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084516 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-109_75b 265 chr3L 9109758 9109776 chr3L 9110552 9110570 7 794 3.0 2.5 2.8 1.8 812 chr3L 9109758 intron bol - chr3L 9110164 intron bol - chr3L 9110570 intron bol - chr3L_7_9110001 chr3L_9110001 RAL-109_75b 266 chr3L 9219248 9219277 chr3L 9219919 9219926 jockey 5 664 3.5 3.0 3.2 1.2 678 chr3L 9219248 intergenic not near genes chr3L 9219587 intergenic not near genes chr3L 9219926 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-109_75b 267 chr3L 9234533 9234549 chr3L 9234743 9234760 5 211 0.5 1.5 1.0 2.5 227 chr3L 9234533 intergenic not near genes chr3L 9234646 intergenic not near genes chr3L 9234760 intergenic CG4483 - chr3L_5_9230001 chr3L_9230001 RAL-109_75b 268 chr3L 9359590 9359619 chr3L 9359681 9359710 5 91 0.0 1.5 0.8 2.8 120 chr3L 9359590 3` UTR CG32039 + chr3L 9359650 3` UTR CG32039 + chr3L 9359710 3` UTR CG32039 + chr3L_5_9355001 chr3L_9355001 RAL-109_75b 269 chr3L 9637855 9637881 chr3L 9637937 9637963 8 81 4.0 0.0 2.0 2.7 108 chr3L 9637855 intron fry - chr3L 9637909 intron fry - chr3L 9637963 intron fry - chr3L_8_9635001 chr3L_9635001 RAL-109_75b 270 chr3L 9918885 9918901 chr3L 9918979 9918996 6 94 4.0 1.5 2.8 1.6 111 chr3L 9918885 intron CG34356 + chr3L 9918940 intron CG34356 + chr3L 9918996 intron CG34356 + chr3L_6_9915001 chr3L_9915001 RAL-109_75b 271 chr3L 10058941 10058967 chr3L 10059031 10059057 5 90 1.5 2.0 1.8 1.8 116 chr3L 10058941 intron dpr6 + chr3L 10058999 intron dpr6 + chr3L 10059057 intron dpr6 + chr3L_5_10055001 chr3L_10055001 RAL-109_75b 272 chr3L 10078107 10078137 chr3L 10078315 10078343 8 205 2.0 2.5 2.2 2.5 236 chr3L 10078107 intron dpr6 + chr3L 10078225 intron dpr6 + chr3L 10078343 intron dpr6 + chr3L_8_10075001 chr3L_10075001 RAL-109_75b 273 chr3L 10127740 10127768 chr3L 10127814 10127830 5 69 4.0 1.5 2.8 1.3 90 chr3L 10127740 intron dpr6 + chr3L 10127785 intron dpr6 + chr3L 10127830 intron dpr6 + chr3L_5_10125001 chr3L_10125001 RAL-109_75b 274 chr3L 10417573 10417599 chr3L 10417649 10417661 4 68 2.0 3.0 2.5 1.1 88 chr3L 10417573 intergenic not near genes chr3L 10417617 intergenic not near genes chr3L 10417661 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-109_75b 275 chr3L 10526638 10526649 chr3L 10526716 10526716 5 76 2.0 3.5 2.8 1.3 78 chr3L 10526638 intron A2bp1 + chr3L 10526677 intron A2bp1 + chr3L 10526716 intron A2bp1 + chr3L_5_10525001 chr3L_10525001 RAL-109_75b 276 chr3L 10658101 10658201 chr3L 10658175 10658320 7 118 0.0 0.0 0.0 7.0 219 chr3L 10658101 intron CG32066 - chr3L 10658210 intron CG32066 - chr3L 10658320 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-109_75b 277 chr3L 11105300 11105324 chr3L 11107002 11107035 X-element 5 1705 1.0 2.5 1.8 1.8 1735 chr3L 11105300 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107035 exon CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-109_75b 278 chr3L 11435562 11435579 chr3L 11435731 11435748 5 169 3.5 3.5 3.5 1.1 186 chr3L 11435562 intergenic CG6149 -,CR44548 + chr3L 11435655 5` UTR CR44548 + chr3L 11435748 5` UTR CR44548 + chr3L_5_11435001 chr3L_11435001 RAL-109_75b 279 chr3L 11491064 11491068 chr3L 11492952 11492976 7 1898 5.0 24.5 14.8 0.4 1912 chr3L 11491064 intron chrb + chr3L 11492020 intron chrb + chr3L 11492976 intron chrb + chr3L_7_11490001 chr3L_11490001 RAL-109_75b 280 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 3.5 16.0 9.8 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-109_75b 281 chr3L 11864557 11864582 chr3L 11865852 11865871 pogo 5 1293 3.0 2.5 2.8 1.3 1314 chr3L 11864557 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865871 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-109_75b 282 chr3L 12231372 12231404 chr3L 12231671 12231703 6 303 10.0 14.5 12.2 0.5 331 chr3L 12231372 intron app - chr3L 12231538 intron app - chr3L 12231703 intron app - chr3L_6_12230001 chr3L_12230001 RAL-109_75b 283 chr3L 12318622 12318660 chr3L 12318709 12318715 11 82 8.0 5.0 6.5 1.5 93 chr3L 12318622 intergenic not near genes chr3L 12318668 intergenic not near genes chr3L 12318715 intergenic not near genes chr3L_11_12315001 chr3L_12315001 RAL-109_75b 284 chr3L 12801982 12802006 chr3L 12802056 12802082 8 72 2.5 1.5 2.0 2.7 100 chr3L 12801982 intron Atg1 - chr3L 12802032 intron Atg1 - chr3L 12802082 intron Atg1 - chr3L_8_12800001 chr3L_12800001 RAL-109_75b 285 chr3L 12919275 12919304 chr3L 12924747 12924777 Rt1c 4 5465 1.5 2.5 2.0 1.3 5502 chr3L 12919275 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-109_75b 286 chr3L 12967155 12967168 chr3L 12967221 12967241 8 80 2.5 1.0 1.8 2.9 86 chr3L 12967155 exon Or69a - chr3L 12967198 exon Or69a - chr3L 12967241 exon Or69a - chr3L_8_12965001 chr3L_12965001 RAL-109_75b 287 chr3L 12984323 12984337 chr3L 12984414 12984430 4 94 4.0 4.0 4.0 0.8 107 chr3L 12984323 intergenic not near genes chr3L 12984376 intergenic not near genes chr3L 12984430 intergenic not near genes chr3L_4_12980001 chr3L_12980001 RAL-109_75b 288 chr3L 12984339 12984345 chr3L 12984413 12984424 4 83 2.5 4.0 3.2 1.0 85 chr3L 12984339 intergenic not near genes chr3L 12984382 intergenic not near genes chr3L 12984424 intergenic not near genes chr3L_4_12980001 chr3L_12980001 RAL-109_75b 289 chr3L 12990976 12991010 chr3L 12991316 12991347 11 336 1.5 2.0 1.8 3.9 371 chr3L 12990976 intergenic not near genes chr3L 12991162 intergenic not near genes chr3L 12991347 intergenic not near genes chr3L_11_12990001 chr3L_12990001 RAL-109_75b 290 chr3L 13007695 13007723 chr3L 13007773 13007802 5 77 1.5 1.0 1.2 2.3 107 chr3L 13007695 exon CG11263 + chr3L 13007748 3` UTR CG11263 + chr3L 13007802 3` UTR CG11263 + chr3L_5_13005001 chr3L_13005001 RAL-109_75b 291 chr3L 13267292 13267308 chr3L 13267405 13267421 8 112 3.0 0.0 1.5 3.2 129 chr3L 13267292 intron caps + chr3L 13267356 intron caps + chr3L 13267421 intron caps + chr3L_8_13265001 chr3L_13265001 RAL-109_75b 292 chr3L 13525155 13525179 chr3L 13532950 13532975 roo 10 7796 3.0 1.0 2.0 3.3 7820 chr3L 13525155 intergenic not near genes chr3L 13529065 intergenic not near genes chr3L 13532975 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-109_75b 293 chr3L 13633416 13633441 chr3L 13633770 13633795 4 354 2.5 3.0 2.8 1.1 379 chr3L 13633416 intron bru-3 - chr3L 13633606 intron bru-3 - chr3L 13633795 intron bru-3 - chr3L_4_13630001 chr3L_13630001 RAL-109_75b 294 chr3L 13648895 13648917 chr3L 13648985 13649006 5 89 2.0 2.0 2.0 1.7 111 chr3L 13648895 intron bru-3 - chr3L 13648950 intron bru-3 - chr3L 13649006 intron bru-3 - chr3L_5_13645001 chr3L_13645001 RAL-109_75b 295 chr3L 13804543 13804560 chr3L 13822829 13822846 roo 4 18286 1.0 2.0 1.5 1.6 18303 chr3L 13804543 intergenic not near genes chr3L 13813694 intergenic not near genes chr3L 13822846 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-109_75b 296 chr3L 13834336 13834352 chr3L 13834443 13834461 4 108 3.0 5.0 4.0 0.8 125 chr3L 13834336 intergenic not near genes chr3L 13834398 intergenic not near genes chr3L 13834461 intergenic not near genes chr3L_4_13830001 chr3L_13830001 RAL-109_75b 297 chr3L 14245569 14245590 chr3L 14245662 14245683 1360 5 92 2.0 1.0 1.5 2.0 114 chr3L 14245569 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245683 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-109_75b 298 chr3L 14295986 14296016 chr3L 14296469 14296469 roo 11 478 2.0 2.0 2.0 3.7 483 chr3L 14295986 intron fz + chr3L 14296228 intron fz + chr3L 14296469 intron fz + chr3L_11_14295001 chr3L_14295001 RAL-109_75b 299 chr3L 14411865 14411897 chr3L 14411943 14411974 5 78 1.0 3.5 2.2 1.6 109 chr3L 14411865 intron CG3919 + chr3L 14411920 intron CG3919 + chr3L 14411974 intron CG3919 + chr3L_5_14410001 chr3L_14410001 RAL-109_75b 300 chr3L 15633078 15633106 chr3L 15633154 15633160 4 69 0.5 0.5 0.5 2.7 82 chr3L 15633078 intron comm3 - chr3L 15633119 intron comm3 - chr3L 15633160 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-109_75b 301 chr3L 15756885 15756913 chr3L 15756968 15756996 6 83 2.0 0.0 1.0 3.0 111 chr3L 15756885 intergenic not near genes chr3L 15756940 intergenic not near genes chr3L 15756996 intergenic not near genes chr3L_6_15755001 chr3L_15755001 RAL-109_75b 302 chr3L 15832274 15832286 chr3L 15832333 15832340 5 71 1.5 0.0 0.8 2.8 66 chr3L 15832274 intergenic CG12713 +,dbo + chr3L 15832307 intergenic CG12713 +,dbo + chr3L 15832340 intergenic CG12713 +,dbo + chr3L_5_15830001 chr3L_15830001 RAL-109_75b 303 chr3L 15875661 15875671 chr3L 15875798 15875806 5 146 2.0 2.5 2.2 1.6 145 chr3L 15875661 intron pHCl - chr3L 15875734 intron pHCl - chr3L 15875806 intron pHCl - chr3L_5_15875001 chr3L_15875001 RAL-109_75b 304 chr3L 15899225 15899258 chr3L 15899789 15899825 jockey 7 553 2.0 5.0 3.5 1.6 600 chr3L 15899225 intergenic pHCl - chr3L 15899525 intergenic pHCl - chr3L 15899825 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-109_75b 305 chr3L 16044035 16044046 chr3L 16044364 16044375 4 329 4.5 1.0 2.8 1.1 340 chr3L 16044035 intron th - chr3L 16044205 intron th - chr3L 16044375 intron th - chr3L_4_16040001 chr3L_16040001 RAL-109_75b 306 chr3L 16184108 16184131 chr3L 16188927 16188950 X-element 7 4819 0.0 2.0 1.0 3.5 4842 chr3L 16184108 intergenic not near genes chr3L 16186529 intergenic not near genes chr3L 16188950 intergenic not near genes chr3L_7_16185001 chr3L_16185001 RAL-109_75b 307 chr3L 16366793 16366799 chr3L 16366913 16366926 5 126 1.5 4.0 2.8 1.3 133 chr3L 16366793 exon Cpr72Ec - chr3L 16366860 exon Cpr72Ec - chr3L 16366926 exon Cpr72Ec - chr3L_5_16365001 chr3L_16365001 RAL-109_75b 308 chr3L 16493981 16494007 chr3L 16494497 16494497 jockey 11 512 2.0 4.0 3.0 2.8 516 chr3L 16493981 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494239 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494497 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 RAL-109_75b 309 chr3L 16749204 16749229 chr3L 16749280 16749305 4 75 3.0 1.5 2.2 1.2 101 chr3L 16749204 intergenic not near genes chr3L 16749254 intergenic not near genes chr3L 16749305 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-109_75b 310 chr3L 16817878 16817906 chr3L 16818018 16818045 9 139 3.0 2.5 2.8 2.4 167 chr3L 16817878 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818045 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-109_75b 311 chr3L 17085002 17085029 chr3L 17094151 17094176 roo 4 9148 0.5 0.5 0.5 2.7 9174 chr3L 17085002 intron Rbp6 - chr3L 17089589 intron Rbp6 - chr3L 17094176 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-109_75b 312 chr3L 17164380 17164400 chr3L 17164515 17164523 7 135 3.0 0.0 1.5 2.8 143 chr3L 17164380 intron Rbp6 - chr3L 17164452 intron Rbp6 - chr3L 17164523 intron Rbp6 - chr3L_7_17160001 chr3L_17160001 RAL-109_75b 313 chr3L 17280110 17280123 chr3L 17280184 17280209 6 83 1.5 1.5 1.5 2.4 99 chr3L 17280110 intergenic not near genes chr3L 17280160 intergenic not near genes chr3L 17280209 intergenic not near genes chr3L_6_17280001 chr3L_17280001 RAL-109_75b 314 chr3L 17331062 17331075 chr3L 17331152 17331163 5 90 1.5 0.5 1.0 2.5 101 chr3L 17331062 intergenic not near genes chr3L 17331112 intergenic not near genes chr3L 17331163 intergenic not near genes chr3L_5_17330001 chr3L_17330001 RAL-109_75b 315 chr3L 17367402 17367426 chr3L 17367539 17367563 4 137 1.0 1.0 1.0 2.0 161 chr3L 17367402 intergenic CR45688 +,Cad74A - chr3L 17367482 intergenic CR45688 +,Cad74A - chr3L 17367563 intergenic Cad74A -,CR45688 + chr3L_4_17365001 chr3L_17365001 RAL-109_75b 316 chr3L 17516983 17517002 chr3L 17524541 17524560 412 4 7558 1.5 2.5 2.0 1.3 7577 chr3L 17516983 intron CG7564 + chr3L 17520772 intron CG7564 + chr3L 17524560 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-109_75b 317 chr3L 18047708 18047717 chr3L 18056765 18056765 roo 4 9054 0.5 1.0 0.8 2.2 9057 chr3L 18047708 intron Eip75B - chr3L 18052236 intron Eip75B - chr3L 18056765 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-109_75b 318 chr3L 18134625 18134637 chr3L 18134751 18134774 4 129 1.5 1.0 1.2 1.8 149 chr3L 18134625 intergenic not near genes chr3L 18134700 intergenic not near genes chr3L 18134774 intergenic not near genes chr3L_4_18130001 chr3L_18130001 RAL-109_75b 319 chr3L 18506152 18506156 chr3L 18509615 18509619 F-element 4 3463 0.5 1.0 0.8 2.2 3467 chr3L 18506152 intergenic not near genes chr3L 18507886 intergenic not near genes chr3L 18509619 intergenic not near genes chr3L_4_18505001 chr3L_18505001 RAL-109_75b 320 chr3L 18547781 18547806 chr3L 18548310 18548335 4 528 1.0 0.0 0.5 2.7 554 chr3L 18547781 intergenic not near genes chr3L 18548058 intergenic not near genes chr3L 18548335 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-109_75b 321 chr3L 18772412 18772440 chr3L 18781091 18781111 roo 4 8676 1.0 1.5 1.2 1.8 8699 chr3L 18772412 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781111 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-109_75b 322 chr3L 18861763 18861786 chr3L 18861856 18861878 4 92 2.0 2.5 2.2 1.2 115 chr3L 18861763 intergenic not near genes chr3L 18861820 intergenic not near genes chr3L 18861878 intergenic not near genes chr3L_4_18860001 chr3L_18860001 RAL-109_75b 323 chr3L 18969601 18969630 chr3L 18969696 18969726 4 96 2.0 1.0 1.5 1.6 125 chr3L 18969601 intergenic not near genes chr3L 18969664 intergenic not near genes chr3L 18969726 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-109_75b 324 chr3L 19114476 19114497 chr3L 19114993 19115022 5 523 2.5 2.0 2.2 1.6 546 chr3L 19114476 intron CG14082 - chr3L 19114749 intron CG14082 - chr3L 19115022 intron CG14082 - chr3L_5_19110001 chr3L_19110001 RAL-109_75b 325 chr3L 19208064 19208089 chr3L 19209430 19209463 Doc 4 1371 2.0 1.5 1.8 1.4 1399 chr3L 19208064 intron fz2 - chr3L 19208764 intron fz2 - chr3L 19209463 intron fz2 - chr3L_4_19205001 chr3L_19205001 RAL-109_75b 326 chr3L 19410371 19410380 chr3L 19410447 19410454 4 74 2.5 0.5 1.5 1.6 83 chr3L 19410371 intron CG32206 - chr3L 19410412 intron CG32206 - chr3L 19410454 intron CG32206 - chr3L_4_19410001 chr3L_19410001 RAL-109_75b 327 chr3L 19641440 19641462 chr3L 19641536 19641559 8 98 1.5 2.5 2.0 2.7 119 chr3L 19641440 intron CG8786 - chr3L 19641500 intron CG8786 - chr3L 19641559 intron CG8786 - chr3L_8_19640001 chr3L_19640001 RAL-109_75b 328 chr3L 19703863 19703878 chr3L 19704017 19704031 4 154 0.0 1.5 0.8 2.2 168 chr3L 19703863 intron serp - chr3L 19703947 intron serp - chr3L 19704031 intron serp - chr3L_4_19700001 chr3L_19700001 RAL-109_75b 329 chr3L 19961267 19961288 chr3L 19961343 19961365 4 76 1.5 1.0 1.2 1.8 98 chr3L 19961267 intron Ac76E + chr3L 19961316 intron Ac76E + chr3L 19961365 intron Ac76E + chr3L_4_19960001 chr3L_19960001 RAL-109_75b 330 chr3L 20100490 20100499 chr3L 20100549 20100580 5 63 2.0 0.5 1.2 2.3 90 chr3L 20100490 intron CG14186 - chr3L 20100535 intron CG14186 - chr3L 20100580 intron CG14186 - chr3L_5_20100001 chr3L_20100001 RAL-109_75b 331 chr3L 20256638 20256658 chr3L 20256746 20256768 5 108 5.5 0.5 3.0 1.2 130 chr3L 20256638 exon rdgC + chr3L 20256703 intron rdgC + chr3L 20256768 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-109_75b 332 chr3L 20487663 20487673 chr3L 20488114 20488117 INE-1 4 449 3.5 2.5 3.0 1.0 454 chr3L 20487663 intron ZnT77C - chr3L 20487890 intron ZnT77C - chr3L 20488117 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-109_75b 333 chr3L 20946203 20946218 chr3L 20946290 20946296 4 84 4.0 0.5 2.2 1.2 93 chr3L 20946203 intron fng - chr3L 20946250 intron fng - chr3L 20946296 intron fng - chr3L_4_20945001 chr3L_20945001 RAL-109_75b 334 chr3L 21014918 21014946 chr3L 21023398 21023404 Tirant 4 8472 2.0 3.5 2.8 1.1 8486 chr3L 21014918 intron skd - chr3L 21019161 intron skd - chr3L 21023404 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-109_75b 335 chr3L 21639210 21639223 chr3L 21639289 21639298 4 78 1.0 4.5 2.8 1.1 88 chr3L 21639210 intergenic CG32445 +,CG32444 + chr3L 21639254 intergenic CG32445 +,CG32444 + chr3L 21639298 intergenic CG32445 +,CG32444 + chr3L_4_21635001 chr3L_21635001 RAL-109_75b 336 chr3L 21712170 21712200 chr3L 21712247 21712278 10 74 2.0 2.5 2.2 3.1 108 chr3L 21712170 intergenic not near genes chr3L 21712224 intergenic not near genes chr3L 21712278 intergenic not near genes chr3L_10_21710001 chr3L_21710001 RAL-109_75b 337 chr3L 21749343 21749353 chr3L 21754472 21754486 Doc 5 5140 1.0 2.5 1.8 1.8 5143 chr3L 21749343 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754486 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-109_75b 338 chr3L 21785776 21785799 chr3L 21786097 21786122 5 323 0.5 1.5 1.0 2.5 346 chr3L 21785776 intergenic not near genes chr3L 21785949 intergenic not near genes chr3L 21786122 intergenic not near genes chr3L_5_21785001 chr3L_21785001 RAL-109_75b 339 chr3L 22308687 22308696 chr3L 22308746 22308767 9 74 0.5 3.0 1.8 3.2 80 chr3L 22308687 intron Ten-m - chr3L 22308727 intron Ten-m - chr3L 22308767 intron Ten-m - chr3L_9_22305001 chr3L_22305001 RAL-109_75b 340 chr3L 22408163 22408167 chr3L 22410568 22410594 7 2408 1.5 17.5 9.5 0.7 2431 chr3L 22408163 intergenic Ten-m - chr3L 22409378 intergenic not near genes chr3L 22410594 intergenic not near genes chr3L_7_22405001 chr3L_22405001 RAL-109_75b 341 chr3L 22447195 22447232 chr3L 22447286 22447323 8 87 2.5 1.0 1.8 2.9 128 chr3L 22447195 intergenic not near genes chr3L 22447259 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_8_22445001 chr3L_22445001 RAL-109_75b 342 chr3L 22507143 22507151 chr3L 22507212 22507237 4 80 4.5 3.5 4.0 0.8 94 chr3L 22507143 intergenic not near genes chr3L 22507190 intergenic not near genes chr3L 22507237 intergenic not near genes chr3L_4_22505001 chr3L_22505001 RAL-109_75b 343 chr3L 22577630 22577640 chr3L 22582417 22582428 Doc 6 4787 4.0 4.0 4.0 1.2 4798 chr3L 22577630 intergenic not near genes chr3L 22580029 intergenic not near genes chr3L 22582428 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-109_75b 344 chr3L 22577641 22577654 chr3L 22582402 22582412 Doc 4 4764 3.5 3.0 3.2 1.0 4771 chr3L 22577641 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582412 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-109_75b 345 chr3L 22617192 22617221 chr3L 22624643 22624673 blood 5 7452 3.5 2.0 2.8 1.3 7481 chr3L 22617192 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-109_75b 346 chr3L 22853472 22853705 chr3L 22853559 22853791 9 85 3.0 4.0 3.5 2.0 319 chr3L 22853472 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853632 5` UTR CR43426 + chr3L 22853791 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-109_75b 347 chr3L 23042235 23042249 chr3L 23048988 23049002 gypsy6 5 6753 5.0 3.0 4.0 1.0 6767 chr3L 23042235 intergenic not near genes chr3L 23045618 intergenic not near genes chr3L 23049002 intergenic not near genes chr3L_5_23045001 chr3L_23045001 RAL-109_75b 348 chr3L 23285624 23285657 chr3L 23286304 23286323 5 677 0.0 1.5 0.8 2.8 699 chr3L 23285624 3` UTR nAChRalpha4 + chr3L 23285974 3` UTR nAChRalpha4 + chr3L 23286323 3` UTR nAChRalpha4 + chr3L_5_23285001 chr3L_23285001 RAL-109_75b 349 chr3L 23288276 23288298 chr3L 23288954 23288977 INE-1 5 678 1.0 3.0 2.0 1.7 701 chr3L 23288276 intergenic not near genes chr3L 23288626 intergenic not near genes chr3L 23288977 intergenic not near genes chr3L_5_23285001 chr3L_23285001 RAL-109_75b 350 chr3L 23450105 23450132 chr3L 23450607 23450633 8 499 2.5 1.5 2.0 2.7 528 chr3L 23450105 intergenic not near genes chr3L 23450369 intergenic not near genes chr3L 23450633 intergenic not near genes chr3L_8_23450001 chr3L_23450001 RAL-109_75b 351 chr3L 23875536 23875555 chr3L 23875606 23875636 6 74 2.5 4.0 3.2 1.4 100 chr3L 23875536 intron CG40470 - chr3L 23875586 intron CG40470 - chr3L 23875636 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-109_75b 352 chr3L 24168788 24168819 chr3L 24176116 24176125 ZAM 5 7322 4.0 4.0 4.0 1.0 7337 chr3L 24168788 intron Snap25 + chr3L 24172456 intron Snap25 + chr3L 24176125 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-109_75b 353 chr3R 1867169 1867175 chr3R 1954890 1954913 Doc3-element 6 87729 6.5 5.0 5.8 0.9 87744 chr3R 1867169 intron CG42623 + chr3R 1911041 intron CG42623 + chr3R 1954913 intergenic not near genes chr3R_6_1910001 chr3R_1910001 RAL-109_75b 354 chr3R 2534137 2534165 chr3R 2541705 2541734 5 7564 7.0 12.5 9.8 0.5 7597 chr3R 2534137 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541734 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-109_75b 355 chr3R 4161539 4161569 chr3R 4161616 4161646 8 70 1.0 1.5 1.2 3.6 107 chr3R 4161539 3` UTR CG40198 - chr3R 4161592 3` UTR CG40198 - chr3R 4161646 exon CG40198 - chr3R_8_4160001 chr3R_4160001 RAL-109_75b 356 chr3R 4609570 4609578 chr3R 4610734 4610742 1360 4 1162 2.5 5.5 4.0 0.8 1172 chr3R 4609570 intergenic not near genes chr3R 4610156 intergenic not near genes chr3R 4610742 intergenic not near genes chr3R_4_4610001 chr3R_4610001 RAL-109_75b 357 chr3R 4753254 4753270 chr3R 4757540 4757546 F-element 5 4294 2.0 3.5 2.8 1.3 4292 chr3R 4753254 intron,intron atms +,CG44098 - chr3R 4755400 intron,intron atms +,CG44098 - chr3R 4757546 intron,exon atms +,CG44098 - chr3R_5_4755001 chr3R_4755001 RAL-109_75b 358 chr3R 4769158 4769191 chr3R 4769236 4769269 5 78 2.0 3.0 2.5 1.4 111 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-109_75b 359 chr3R 4784518 4784546 chr3R 4791398 4791422 5 6878 19.0 25.0 22.0 0.2 6904 chr3R 4784518 exon CG17387 - chr3R 4787970 exon ctrip - chr3R 4791422 exon ctrip - chr3R_5_4785001 chr3R_4785001 RAL-109_75b 360 chr3R 4887480 4887508 chr3R 4894857 4894876 rover 5 7374 0.0 2.0 1.0 2.5 7396 chr3R 4887480 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894876 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-109_75b 361 chr3R 5067985 5068010 chr3R 5073501 5073526 mdg3 6 5510 3.5 0.5 2.0 2.0 5541 chr3R 5067985 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-109_75b 362 chr3R 5338394 5338423 chr3R 5343571 5343599 Rt1c 6 5177 2.5 5.0 3.8 1.2 5205 chr3R 5338394 intron mtd - chr3R 5340996 intron mtd - chr3R 5343599 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-109_75b 363 chr3R 5385972 5386004 chr3R 5386143 5386175 5 170 4.5 1.5 3.0 1.2 203 chr3R 5385972 intron kkv - chr3R 5386074 intron kkv - chr3R 5386175 intron kkv - chr3R_5_5385001 chr3R_5385001 RAL-109_75b 364 chr3R 5627159 5627166 chr3R 5627570 5627577 5 411 0.5 3.0 1.8 1.8 418 chr3R 5627159 intergenic not near genes chr3R 5627368 intergenic CG31551 + chr3R 5627577 intergenic CG31551 + chr3R_5_5625001 chr3R_5625001 RAL-109_75b 365 chr3R 5746015 5746046 chr3R 5746256 5746261 pogo 6 237 0.5 4.0 2.2 1.9 246 chr3R 5746015 3` UTR Madm + chr3R 5746138 3` UTR Madm + chr3R 5746261 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-109_75b 366 chr3R 5822380 5822413 chr3R 5823547 5823580 1360 5 1167 0.5 2.0 1.2 2.3 1200 chr3R 5822380 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-109_75b 367 chr3R 5943408 5943416 chr3R 5943486 5943495 4 78 2.0 0.0 1.0 2.0 87 chr3R 5943408 intron CG34113 - chr3R 5943452 intron CG34113 - chr3R 5943495 intron CG34113 - chr3R_4_5940001 chr3R_5940001 RAL-109_75b 368 chr3R 6158510 6158529 chr3R 6167092 6167112 Tirant 6 8581 4.0 2.0 3.0 1.5 8602 chr3R 6158510 intergenic not near genes chr3R 6162811 intergenic not near genes chr3R 6167112 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-109_75b 369 chr3R 6206281 6206317 chr3R 6206496 6206533 BS 4 210 3.0 2.0 2.5 1.1 252 chr3R 6206281 exon Osi24 + chr3R 6206407 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-109_75b 370 chr3R 6241336 6241362 chr3R 6241412 6241415 4 66 0.0 0.0 0.0 4.0 79 chr3R 6241336 intergenic not near genes chr3R 6241376 intergenic not near genes chr3R 6241415 intergenic not near genes chr3R_4_6240001 chr3R_6240001 RAL-109_75b 371 chr3R 6523339 6523351 chr3R 6523693 6523727 5 366 1.0 2.0 1.5 2.0 388 chr3R 6523339 intergenic not near genes chr3R 6523533 intergenic not near genes chr3R 6523727 intergenic not near genes chr3R_5_6520001 chr3R_6520001 RAL-109_75b 372 chr3R 6862221 6862253 chr3R 6862307 6862339 5 82 0.5 2.5 1.5 2.0 118 chr3R 6862221 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862339 intergenic not near genes chr3R_5_6860001 chr3R_6860001 RAL-109_75b 373 chr3R 7092788 7092816 chr3R 7093352 7093380 14 562 3.5 4.0 3.8 2.9 592 chr3R 7092788 3` UTR CR43685 - chr3R 7093084 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_14_7090001 chr3R_7090001 RAL-109_75b 374 chr3R 7103291 7103311 chr3R 7103367 7103372 5 73 3.5 1.5 2.5 1.4 81 chr3R 7103291 intron Alh - chr3R 7103332 intron Alh - chr3R 7103372 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-109_75b 375 chr3R 7105321 7105345 chr3R 7105404 7105426 9 82 2.0 1.5 1.8 3.2 105 chr3R 7105321 intron Alh - chr3R 7105374 intron Alh - chr3R 7105426 intron Alh - chr3R_9_7105001 chr3R_7105001 RAL-109_75b 376 chr3R 8156359 8156380 chr3R 8156439 8156461 4 81 2.0 5.5 3.8 0.8 102 chr3R 8156359 intron grn - chr3R 8156410 intron grn - chr3R 8156461 intron grn - chr3R_4_8155001 chr3R_8155001 RAL-109_75b 377 chr3R 8339244 8339247 chr3R 21907534 21907536 31 13568289 13.5 18.0 15.8 1.8 13568292 chr3R 8339244 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_31_15120001 chr3R_15120001 RAL-109_75b 378 chr3R 8395279 8395291 chr3R 8395393 8395405 4 114 4.0 6.5 5.2 0.6 126 chr3R 8395279 intron CG45263 - chr3R 8395342 intron CG45263 - chr3R 8395405 intron CG45263 - chr3R_4_8395001 chr3R_8395001 RAL-109_75b 379 chr3R 8403011 8403034 chr3R 8412177 8412200 roo 6 9163 4.5 2.5 3.5 1.3 9189 chr3R 8403011 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412200 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-109_75b 380 chr3R 8570493 8570510 chr3R 8575114 8575145 HMS-Beagle 5 4627 1.0 2.5 1.8 1.8 4652 chr3R 8570493 intergenic not near genes chr3R 8572819 intergenic not near genes chr3R 8575145 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-109_75b 381 chr3R 8614799 8614818 chr3R 8614996 8615006 5 197 0.5 1.0 0.8 2.8 207 chr3R 8614799 intron 5-HT2B + chr3R 8614902 intron 5-HT2B + chr3R 8615006 intron 5-HT2B + chr3R_5_8610001 chr3R_8610001 RAL-109_75b 382 chr3R 8707359 8707385 chr3R 8709799 8709827 jockey 6 2440 3.5 4.0 3.8 1.2 2468 chr3R 8707359 intergenic not near genes chr3R 8708593 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-109_75b 383 chr3R 8934216 8934226 chr3R 8934300 8934310 4 84 0.0 5.0 2.5 1.1 94 chr3R 8934216 intergenic CR44020 - chr3R 8934263 intergenic CR44020 - chr3R 8934310 3` UTR CR44020 - chr3R_4_8930001 chr3R_8930001 RAL-109_75b 384 chr3R 9082047 9082070 chr3R 9082141 9082164 4 94 0.5 3.0 1.8 1.4 117 chr3R 9082047 intron pum - chr3R 9082106 intron pum - chr3R 9082164 intron pum - chr3R_4_9080001 chr3R_9080001 RAL-109_75b 385 chr3R 9146767 9146800 chr3R 9146851 9146883 14 79 4.0 2.5 3.2 3.3 116 chr3R 9146767 intron pum - chr3R 9146825 intron pum - chr3R 9146883 intron pum - chr3R_14_9145001 chr3R_9145001 RAL-109_75b 386 chr3R 9278786 9278815 chr3R 9284046 9284067 Rt1a 4 5258 1.5 2.0 1.8 1.4 5281 chr3R 9278786 intergenic not near genes chr3R 9281426 intergenic not near genes chr3R 9284067 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-109_75b 387 chr3R 9319570 9319607 chr3R 9320005 9320042 jockey 6 435 0.0 2.0 1.0 3.0 472 chr3R 9319570 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-109_75b 388 chr3R 9620956 9620956 chr3R 21907535 21907536 4 12286580 7.5 18.0 12.8 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-109_75b 389 chr3R 9702261 9702288 chr3R 9702337 9702340 6 71 0.0 3.0 1.5 2.4 79 chr3R 9702261 intron Unc-115a - chr3R 9702300 intron Unc-115a - chr3R 9702340 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 RAL-109_75b 390 chr3R 9937091 9937101 chr3R 9937154 9937165 7 63 3.5 1.0 2.2 2.2 74 chr3R 9937091 intron Glut4EF + chr3R 9937128 intron Glut4EF + chr3R 9937165 intron Glut4EF + chr3R_7_9935001 chr3R_9935001 RAL-109_75b 391 chr3R 10194411 10194438 chr3R 10194494 10194516 7 76 3.0 3.0 3.0 1.8 105 chr3R 10194411 intron Syn + chr3R 10194464 intron Syn + chr3R 10194516 intron Syn + chr3R_7_10190001 chr3R_10190001 RAL-109_75b 392 chr3R 10205006 10205011 chr3R 10205098 10205102 4 92 0.5 2.0 1.2 1.8 96 chr3R 10205006 intron,intron Syn +,Timp - chr3R 10205054 intron,intron Syn +,Timp - chr3R 10205102 intron,exon Syn +,Timp - chr3R_4_10205001 chr3R_10205001 RAL-109_75b 393 chr3R 10231789 10231810 chr3R 10237366 10237387 mdg3 4 5577 0.0 2.0 1.0 2.0 5598 chr3R 10231789 intron CG42795 + chr3R 10234588 intron CG42795 + chr3R 10237387 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-109_75b 394 chr3R 10727644 10727679 chr3R 10727724 10727733 6 75 2.5 5.5 4.0 1.2 89 chr3R 10727644 intergenic not near genes chr3R 10727688 intergenic not near genes chr3R 10727733 intergenic not near genes chr3R_6_10725001 chr3R_10725001 RAL-109_75b 395 chr3R 10994301 10994306 chr3R 10994375 10994385 4 77 1.0 3.5 2.2 1.2 84 chr3R 10994301 intron CG34114 + chr3R 10994343 intron CG34114 + chr3R 10994385 intron CG34114 + chr3R_4_10990001 chr3R_10990001 RAL-109_75b 396 chr3R 11057402 11057433 chr3R 11057481 11057512 8 77 1.0 1.5 1.2 3.6 110 chr3R 11057402 intergenic not near genes chr3R 11057457 intergenic not near genes chr3R 11057512 intergenic not near genes chr3R_8_11055001 chr3R_11055001 RAL-109_75b 397 chr3R 11379234 11379267 chr3R 11388389 11388412 roo 6 9149 0.5 3.0 1.8 2.1 9178 chr3R 11379234 intron pros + chr3R 11383823 intron pros + chr3R 11388412 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-109_75b 398 chr3R 11708643 11708663 chr3R 11708851 11708869 5 207 1.0 0.0 0.5 3.3 226 chr3R 11708643 intergenic not near genes chr3R 11708756 intergenic not near genes chr3R 11708869 intergenic not near genes chr3R_5_11705001 chr3R_11705001 RAL-109_75b 399 chr3R 11811101 11811107 chr3R 11811197 11811203 4 96 5.0 5.5 5.2 0.6 102 chr3R 11811101 5` UTR ClC-a - chr3R 11811152 intron ClC-a - chr3R 11811203 intron ClC-a - chr3R_4_11810001 chr3R_11810001 RAL-109_75b 400 chr3R 11811111 11811123 chr3R 11811185 11811219 6 90 3.5 3.5 3.5 1.3 108 chr3R 11811111 5` UTR ClC-a - chr3R 11811165 intron ClC-a - chr3R 11811219 intron ClC-a - chr3R_6_11810001 chr3R_11810001 RAL-109_75b 401 chr3R 11841062 11841100 chr3R 11846253 11846272 BS 6 5184 2.0 2.0 2.0 2.0 5210 chr3R 11841062 intron CG6959 - chr3R 11843667 intron CG6959 - chr3R 11846272 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-109_75b 402 chr3R 12080867 12080897 chr3R 12080941 12080946 4 70 3.0 1.0 2.0 1.3 79 chr3R 12080867 intron CG14741 - chr3R 12080906 intron CG14741 - chr3R 12080946 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-109_75b 403 chr3R 12396845 12396920 chr3R 12403841 12403942 4 6996 1.0 32.5 16.8 0.2 7097 chr3R 12396845 intron CG34402 + chr3R 12400394 intron,exon CG34402 +,lig3 - chr3R 12403942 exon Cyp9f2 - chr3R_4_12400001 chr3R_12400001 RAL-109_75b 404 chr3R 12569954 12569985 chr3R 12570035 12570066 5 78 1.5 2.5 2.0 1.7 112 chr3R 12569954 intron Octbeta2R - chr3R 12570010 intron Octbeta2R - chr3R 12570066 intron Octbeta2R - chr3R_5_12570001 chr3R_12570001 RAL-109_75b 405 chr3R 12666778 12666797 chr3R 12666905 12666923 4 126 3.0 3.5 3.2 1.0 145 chr3R 12666778 intron CG14395 + chr3R 12666850 intron CG14395 + chr3R 12666923 intron CG14395 + chr3R_4_12665001 chr3R_12665001 RAL-109_75b 406 chr3R 12866489 12866516 chr3R 12866640 12866667 6 151 0.0 1.5 0.8 3.3 178 chr3R 12866489 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866667 intergenic not near genes chr3R_6_12865001 chr3R_12865001 RAL-109_75b 407 chr3R 12877658 12877681 chr3R 12877871 12877895 5 214 0.5 1.5 1.0 2.5 237 chr3R 12877658 intergenic not near genes chr3R 12877776 intergenic not near genes chr3R 12877895 intergenic not near genes chr3R_5_12875001 chr3R_12875001 RAL-109_75b 408 chr3R 12952280 12952299 chr3R 12952405 12952421 4 122 10.0 1.5 5.8 0.6 141 chr3R 12952280 intron grsm - chr3R 12952350 intron grsm - chr3R 12952421 intron grsm - chr3R_4_12950001 chr3R_12950001 RAL-109_75b 409 chr3R 12952308 12952313 chr3R 12952404 12952424 6 110 5.5 1.5 3.5 1.3 116 chr3R 12952308 intron grsm - chr3R 12952366 intron grsm - chr3R 12952424 intron grsm - chr3R_6_12950001 chr3R_12950001 RAL-109_75b 410 chr3R 13089736 13089767 chr3R 13089818 13089846 8 78 3.5 1.5 2.5 2.3 110 chr3R 13089736 intron,3` UTR timeout +,CG34308 + chr3R 13089791 intron,3` UTR timeout +,CG34308 + chr3R 13089846 intron,3` UTR timeout +,CG34308 + chr3R_8_13085001 chr3R_13085001 RAL-109_75b 411 chr3R 13120770 13120789 chr3R 13120847 13120860 4 75 5.5 0.5 3.0 1.0 90 chr3R 13120770 intron timeout + chr3R 13120815 intron timeout + chr3R 13120860 intron timeout + chr3R_4_13120001 chr3R_13120001 RAL-109_75b 412 chr3R 13143036 13143052 chr3R 13148613 13148629 mdg3 4 5576 2.0 4.5 3.2 1.0 5593 chr3R 13143036 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148629 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-109_75b 413 chr3R 13151390 13151391 chr3R 13151501 13151515 4 120 0.5 4.5 2.5 1.1 125 chr3R 13151390 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151452 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151515 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13150001 chr3R_13150001 RAL-109_75b 414 chr3R 13274214 13274247 chr3R 13274292 13274326 7 74 2.0 2.5 2.2 2.2 112 chr3R 13274214 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274326 intergenic not near genes chr3R_7_13270001 chr3R_13270001 RAL-109_75b 415 chr3R 13529800 13529830 chr3R 13530009 13530038 6 205 2.5 0.5 1.5 2.4 238 chr3R 13529800 intergenic CG42778 - chr3R 13529919 intergenic not near genes chr3R 13530038 intergenic not near genes chr3R_6_13525001 chr3R_13525001 RAL-109_75b 416 chr3R 13693028 13693028 chr3R 21907534 21907536 13 8214507 6.0 18.0 12.0 1.0 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_13_17800001 chr3R_17800001 RAL-109_75b 417 chr3R 13762060 13762066 chr3R 13762384 13762391 4 324 1.5 3.5 2.5 1.1 331 chr3R 13762060 intron CG34383 + chr3R 13762226 intron CG34383 + chr3R 13762391 intron CG34383 + chr3R_4_13760001 chr3R_13760001 RAL-109_75b 418 chr3R 13975376 13975403 chr3R 13975454 13975483 4 80 0.5 0.0 0.2 3.3 107 chr3R 13975376 intron rdx - chr3R 13975430 intron rdx - chr3R 13975483 intron rdx - chr3R_4_13975001 chr3R_13975001 RAL-109_75b 419 chr3R 14058124 14058148 chr3R 14058244 14058266 5 116 1.0 0.0 0.5 3.3 142 chr3R 14058124 intron foxo + chr3R 14058195 intron foxo + chr3R 14058266 intron foxo + chr3R_5_14055001 chr3R_14055001 RAL-109_75b 420 chr3R 14327693 14327719 chr3R 14327775 14327801 4 81 2.0 2.0 2.0 1.3 108 chr3R 14327693 3` UTR CG3321 + chr3R 14327747 intergenic CG3321 +,spn-B + chr3R 14327801 intergenic CG3321 +,spn-B + chr3R_4_14325001 chr3R_14325001 RAL-109_75b 421 chr3R 14356596 14356610 chr3R 14356679 14356695 5 81 0.5 3.0 1.8 1.8 99 chr3R 14356596 intron NK7.1 - chr3R 14356646 intron NK7.1 - chr3R 14356695 intron NK7.1 - chr3R_5_14355001 chr3R_14355001 RAL-109_75b 422 chr3R 14364069 14364090 chr3R 14364145 14364165 5 75 2.0 3.5 2.8 1.3 96 chr3R 14364069 intron NK7.1 - chr3R 14364117 intron NK7.1 - chr3R 14364165 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-109_75b 423 chr3R 14548574 14548597 chr3R 14548662 14548685 5 87 5.5 2.0 3.8 1.0 111 chr3R 14548574 intron Pde6 - chr3R 14548630 intron Pde6 - chr3R 14548685 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-109_75b 424 chr3R 14840949 14840975 chr3R 14841027 14841035 6 80 4.0 2.5 3.2 1.4 86 chr3R 14840949 intron btsz - chr3R 14840992 intron btsz - chr3R 14841035 intron btsz - chr3R_6_14840001 chr3R_14840001 RAL-109_75b 425 chr3R 14911574 14911598 chr3R 14911671 14911703 8 103 1.5 0.5 1.0 4.0 129 chr3R 14911574 intergenic not near genes chr3R 14911638 intergenic not near genes chr3R 14911703 intergenic not near genes chr3R_8_14910001 chr3R_14910001 RAL-109_75b 426 chr3R 15087404 15087440 chr3R 15087480 15087512 6 72 1.0 1.0 1.0 3.0 108 chr3R 15087404 intron CG6966 - chr3R 15087458 intron CG6966 - chr3R 15087512 intron CG6966 - chr3R_6_15085001 chr3R_15085001 RAL-109_75b 427 chr3R 15286987 15286988 chr3R 21907534 21907535 11 6620548 11.0 18.0 14.5 0.7 6620548 chr3R 15286987 intron Tm1 + chr3R 18597261 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_11_18595001 chr3R_18595001 RAL-109_75b 428 chr3R 15407885 15407904 chr3R 15408101 15408115 4 213 1.0 4.0 2.5 1.1 230 chr3R 15407885 intergenic not near genes chr3R 15408000 intergenic not near genes chr3R 15408115 intergenic not near genes chr3R_4_15405001 chr3R_15405001 RAL-109_75b 429 chr3R 15416259 15416285 chr3R 15416339 15416351 6 75 1.0 1.5 1.2 2.7 92 chr3R 15416259 3` UTR Atx2 + chr3R 15416305 3` UTR Atx2 + chr3R 15416351 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-109_75b 430 chr3R 15601169 15601175 chr3R 15608690 15608697 412 5 7521 4.5 3.5 4.0 1.0 7528 chr3R 15601169 intergenic not near genes chr3R 15604933 intergenic not near genes chr3R 15608697 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-109_75b 431 chr3R 15601180 15601195 chr3R 15608685 15608717 412 5 7509 2.0 2.5 2.2 1.6 7537 chr3R 15601180 intergenic not near genes chr3R 15604948 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-109_75b 432 chr3R 15808552 15808573 chr3R 15808648 15808669 4 94 1.5 3.5 2.5 1.1 117 chr3R 15808552 intron alpha-Man-IIb + chr3R 15808610 intron alpha-Man-IIb + chr3R 15808669 intron alpha-Man-IIb + chr3R_4_15805001 chr3R_15805001 RAL-109_75b 433 chr3R 15942051 15942079 chr3R 15942807 15942834 5 751 3.5 1.5 2.5 1.4 783 chr3R 15942051 intron Sap47 + chr3R 15942442 intron Sap47 + chr3R 15942834 intron Sap47 + chr3R_5_15940001 chr3R_15940001 RAL-109_75b 434 chr3R 16471231 16471257 chr3R 16471329 16471355 4 96 2.0 1.0 1.5 1.6 124 chr3R 16471231 exon CSN5 + chr3R 16471293 3` UTR CSN5 + chr3R 16471355 3` UTR CSN5 + chr3R_4_16470001 chr3R_16470001 RAL-109_75b 435 chr3R 16667081 16667106 chr3R 16667163 16667188 5 80 4.5 0.5 2.5 1.4 107 chr3R 16667081 intron Ubx - chr3R 16667134 intron Ubx - chr3R 16667188 intron Ubx - chr3R_5_16665001 chr3R_16665001 RAL-109_75b 436 chr3R 16676504 16676507 chr3R 16676557 16676586 6 62 4.0 1.5 2.8 1.6 82 chr3R 16676504 intron Ubx - chr3R 16676545 intron Ubx - chr3R 16676586 intron Ubx - chr3R_6_16675001 chr3R_16675001 RAL-109_75b 437 chr3R 16741591 16741618 chr3R 16741740 16741761 6 147 1.0 3.5 2.2 1.9 170 chr3R 16741591 intergenic not near genes chr3R 16741676 intergenic bxd - chr3R 16741761 intergenic bxd - chr3R_6_16740001 chr3R_16740001 RAL-109_75b 438 chr3R 16756322 16756354 chr3R 16762511 16762544 diver 12 6187 1.0 1.5 1.2 5.5 6222 chr3R 16756322 intron bxd - chr3R 16759433 intron bxd - chr3R 16762544 intron bxd - chr3R_12_16755001 chr3R_16755001 RAL-109_75b 439 chr3R 17227312 17227315 chr3R 26242159 26242196 6 9014864 24.0 6.0 15.0 0.4 9014884 chr3R 17227312 intergenic not near genes chr3R 21734754 intergenic not near genes chr3R 26242196 intron CR42745 + chr3R_6_21730001 chr3R_21730001 RAL-109_75b 440 chr3R 17256099 17256130 chr3R 17256198 17256229 4 94 4.5 2.5 3.5 0.9 130 chr3R 17256099 intron beat-IIb - chr3R 17256164 intron beat-IIb - chr3R 17256229 intron beat-IIb - chr3R_4_17255001 chr3R_17255001 RAL-109_75b 441 chr3R 17294669 17294698 chr3R 17295097 17295125 BS 5 428 1.5 2.0 1.8 1.8 456 chr3R 17294669 intergenic not near genes chr3R 17294897 intergenic not near genes chr3R 17295125 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-109_75b 442 chr3R 17348729 17348750 chr3R 17348818 17348832 6 88 2.0 1.5 1.8 2.1 103 chr3R 17348729 intron beat-IIa - chr3R 17348780 intron beat-IIa - chr3R 17348832 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-109_75b 443 chr3R 17363949 17363965 chr3R 17364469 17364501 6 525 2.5 3.5 3.0 1.5 552 chr3R 17363949 intron beat-IIa - chr3R 17364225 intron beat-IIa - chr3R 17364501 intron beat-IIa - chr3R_6_17360001 chr3R_17360001 RAL-109_75b 444 chr3R 17592437 17592452 chr3R 17592511 17592541 6 86 3.0 2.0 2.5 1.7 104 chr3R 17592437 intergenic not near genes chr3R 17592489 intergenic not near genes chr3R 17592541 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-109_75b 445 chr3R 18032784 18032803 chr3R 18040456 18040476 opus 5 7673 0.0 0.5 0.2 4.2 7692 chr3R 18032784 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_5_18035001 chr3R_18035001 RAL-109_75b 446 chr3R 18781694 18781711 chr3R 18781770 18781787 4 76 2.0 3.5 2.8 1.1 93 chr3R 18781694 intron CG7720 - chr3R 18781740 intron CG7720 - chr3R 18781787 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-109_75b 447 chr3R 18812081 18812102 chr3R 18812159 18812180 9 78 2.5 4.5 3.5 2.0 99 chr3R 18812081 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812180 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-109_75b 448 chr3R 18991397 18991421 chr3R 18991463 18991474 4 66 2.0 2.5 2.2 1.2 77 chr3R 18991397 intron gukh + chr3R 18991436 intron gukh + chr3R 18991474 intron gukh + chr3R_4_18990001 chr3R_18990001 RAL-109_75b 449 chr3R 19373578 19373584 chr3R 19373640 19373660 5 72 4.0 1.5 2.8 1.3 82 chr3R 19373578 intron Ino80 - chr3R 19373619 intron Ino80 - chr3R 19373660 intron Ino80 - chr3R_5_19370001 chr3R_19370001 RAL-109_75b 450 chr3R 19516300 19516308 chr3R 19516390 19516405 4 94 4.0 2.0 3.0 1.0 105 chr3R 19516300 intron Dys + chr3R 19516352 intron Dys + chr3R 19516405 intron Dys + chr3R_4_19515001 chr3R_19515001 RAL-109_75b 451 chr3R 19672335 19672359 chr3R 19672429 19672454 4 96 1.5 2.0 1.8 1.4 119 chr3R 19672335 intron Naam + chr3R 19672394 intron Naam + chr3R 19672454 intron Naam + chr3R_4_19670001 chr3R_19670001 RAL-109_75b 452 chr3R 19717702 19717721 chr3R 19717784 19717792 6 79 1.5 3.5 2.5 1.7 90 chr3R 19717702 intergenic not near genes chr3R 19717747 intergenic not near genes chr3R 19717792 intergenic not near genes chr3R_6_19715001 chr3R_19715001 RAL-109_75b 453 chr3R 19953963 19953982 chr3R 19954036 19954057 5 75 3.0 4.0 3.5 1.1 94 chr3R 19953963 intron Hs6st - chr3R 19954010 intron Hs6st - chr3R 19954057 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-109_75b 454 chr3R 20188187 20188211 chr3R 20188336 20188358 4 148 1.5 1.5 1.5 1.6 171 chr3R 20188187 intergenic not near genes chr3R 20188272 intergenic not near genes chr3R 20188358 intergenic not near genes chr3R_4_20185001 chr3R_20185001 RAL-109_75b 455 chr3R 20205414 20205560 chr3R 20205528 20205681 6 110 2.5 2.0 2.2 1.9 267 chr3R 20205414 intron Nlg4 + chr3R 20205548 intron Nlg4 + chr3R 20205681 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-109_75b 456 chr3R 20716815 20716829 chr3R 20717149 20717166 4 335 5.0 1.0 3.0 1.0 351 chr3R 20716815 intergenic not near genes chr3R 20716990 intergenic not near genes chr3R 20717166 intergenic not near genes chr3R_4_20715001 chr3R_20715001 RAL-109_75b 457 chr3R 20716832 20716841 chr3R 20717146 20717166 7 322 3.0 1.0 2.0 2.3 334 chr3R 20716832 intergenic not near genes chr3R 20716999 intergenic not near genes chr3R 20717166 intergenic not near genes chr3R_7_20715001 chr3R_20715001 RAL-109_75b 458 chr3R 20733784 20733795 chr3R 20733852 20733864 6 79 4.5 4.0 4.2 1.2 80 chr3R 20733784 intergenic not near genes chr3R 20733824 intergenic not near genes chr3R 20733864 intergenic not near genes chr3R_6_20730001 chr3R_20730001 RAL-109_75b 459 chr3R 20865309 20865318 chr3R 20865388 20865397 4 79 1.0 6.0 3.5 0.9 88 chr3R 20865309 intron CG3822 - chr3R 20865353 intron CG3822 - chr3R 20865397 intron CG3822 - chr3R_4_20865001 chr3R_20865001 RAL-109_75b 460 chr3R 21041105 21041131 chr3R 21041258 21041284 6 153 2.5 1.5 2.0 2.0 179 chr3R 21041105 exon Dhc93AB - chr3R 21041194 intron Dhc93AB - chr3R 21041284 intron Dhc93AB - chr3R_6_21040001 chr3R_21040001 RAL-109_75b 461 chr3R 21141690 21141706 chr3R 21150157 21150166 Tirant 5 8471 4.0 2.5 3.2 1.2 8476 chr3R 21141690 intron SNF4Agamma + chr3R 21145928 intron SNF4Agamma + chr3R 21150166 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-109_75b 462 chr3R 21163250 21163276 chr3R 21163328 21163332 6 74 0.0 1.0 0.5 4.0 82 chr3R 21163250 intron SNF4Agamma + chr3R 21163291 intron SNF4Agamma + chr3R 21163332 intron SNF4Agamma + chr3R_6_21160001 chr3R_21160001 RAL-109_75b 463 chr3R 21183262 21183471 chr3R 21183339 21183564 7 87 3.0 2.0 2.5 2.0 302 chr3R 21183262 intron SNF4Agamma + chr3R 21183413 intron SNF4Agamma + chr3R 21183564 intron SNF4Agamma + chr3R_7_21180001 chr3R_21180001 RAL-109_75b 464 chr3R 21322974 21322992 chr3R 21323053 21323069 4 78 0.5 0.0 0.2 3.3 95 chr3R 21322974 intron CG16791 - chr3R 21323022 intron CG16791 - chr3R 21323069 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-109_75b 465 chr3R 21472019 21472030 chr3R 21472100 21472111 5 81 3.0 1.5 2.2 1.6 92 chr3R 21472019 intergenic not near genes chr3R 21472065 intergenic not near genes chr3R 21472111 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-109_75b 466 chr3R 21708347 21708371 chr3R 21708466 21708491 5 118 1.5 0.5 1.0 2.5 144 chr3R 21708347 intron CG31176 - chr3R 21708419 intron CG31176 - chr3R 21708491 intron CG31176 - chr3R_5_21705001 chr3R_21705001 RAL-109_75b 467 chr3R 21761140 21761153 chr3R 21768510 21768542 mdg1 6 7379 2.5 3.0 2.8 1.6 7402 chr3R 21761140 exon CG42335 + chr3R 21764841 intron CG42335 + chr3R 21768542 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-109_75b 468 chr3R 21784868 21784879 chr3R 21784966 21784977 4 98 1.5 0.0 0.8 2.2 109 chr3R 21784868 3` UTR,3` UTR CASK -,CRG - chr3R 21784922 3` UTR,3` UTR CASK -,CRG - chr3R 21784977 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-109_75b 469 chr3R 21878297 21878319 chr3R 21878373 21878374 4 77 3.0 2.0 2.5 1.1 77 chr3R 21878297 exon,5` UTR CG34148 -,P5CDh2 + chr3R 21878336 exon,intron CG34148 -,P5CDh2 + chr3R 21878374 exon,5` UTR CG34148 -,P5CDh2 + chr3R_4_21875001 chr3R_21875001 RAL-109_75b 470 chr3R 8339246 8339247 chr3R 21907534 21907534 12 13568288 13.5 18.0 15.8 0.7 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_12_15120001 chr3R_15120001 RAL-109_75b 471 chr3R 9620955 9620957 chr3R 21907534 21907534 4 12286578 7.5 18.0 12.8 0.3 12286579 chr3R 9620955 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-109_75b 472 chr3R 21907534 21907534 chr3R 28831801 28831802 17 6924268 15.0 10.0 12.5 1.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-109_75b 473 chr3R 8339242 8339247 chr3R 21907535 21907535 13 13568289 13.5 18.0 15.8 0.8 13568293 chr3R 8339242 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_13_15120001 chr3R_15120001 RAL-109_75b 474 chr3R 9620954 9620956 chr3R 21907535 21907535 7 12286579 7.5 18.0 12.8 0.5 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-109_75b 475 chr3R 21907535 21907535 chr3R 28831801 28831804 28 6924267 15.0 10.0 12.5 2.1 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-109_75b 476 chr3R 8339246 8339247 chr3R 21907536 21907536 5 13568289 13.5 17.5 15.5 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-109_75b 477 chr3R 9620954 9620957 chr3R 21907536 21907536 4 12286580 7.5 17.5 12.5 0.3 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-109_75b 478 chr3R 21907536 21907536 chr3R 28831801 28831803 33 6924266 15.0 10.0 12.5 2.4 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_33_25365001 chr3R_25365001 RAL-109_75b 479 chr3R 22330603 22330636 chr3R 22332309 22332341 11 1706 17.0 23.0 20.0 0.5 1738 chr3R 22330603 intergenic CG7080 +,CG33721 + chr3R 22331472 exon CG33721 + chr3R 22332341 exon CG13862 + chr3R_11_22330001 chr3R_22330001 RAL-109_75b 480 chr3R 22507801 22507807 chr3R 22507878 22507891 4 79 3.0 0.5 1.8 1.4 90 chr3R 22507801 intron Octbeta1R + chr3R 22507846 intron Octbeta1R + chr3R 22507891 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-109_75b 481 chr3R 22507812 22507816 chr3R 22507871 22507887 4 74 2.5 0.5 1.5 1.6 75 chr3R 22507812 intron Octbeta1R + chr3R 22507850 intron Octbeta1R + chr3R 22507887 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-109_75b 482 chr3R 22950340 22950366 chr3R 22950709 22950730 6 368 1.5 4.5 3.0 1.5 390 chr3R 22950340 intron klg + chr3R 22950535 intron klg + chr3R 22950730 intron klg + chr3R_6_22950001 chr3R_22950001 RAL-109_75b 483 chr3R 22974287 22974306 chr3R 22974369 22974390 4 84 1.0 2.5 1.8 1.4 103 chr3R 22974287 intergenic not near genes chr3R 22974338 intergenic not near genes chr3R 22974390 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-109_75b 484 chr3R 22979753 22979777 chr3R 22979834 22979838 4 73 3.5 2.5 3.0 1.0 85 chr3R 22979753 intergenic not near genes chr3R 22979796 intergenic not near genes chr3R 22979838 intergenic not near genes chr3R_4_22975001 chr3R_22975001 RAL-109_75b 485 chr3R 23064172 23064205 chr3R 23064281 23064312 6 104 4.5 1.5 3.0 1.5 140 chr3R 23064172 exon CG17111 - chr3R 23064242 intron CG17111 - chr3R 23064312 exon CG17111 - chr3R_6_23060001 chr3R_23060001 RAL-109_75b 486 chr3R 23260955 23260988 chr3R 23261037 23261070 4 82 1.0 2.0 1.5 1.6 115 chr3R 23260955 3` UTR orb - chr3R 23261012 3` UTR orb - chr3R 23261070 3` UTR orb - chr3R_4_23260001 chr3R_23260001 RAL-109_75b 487 chr3R 23291260 23291276 chr3R 23291332 23291339 7 78 1.5 1.5 1.5 2.8 79 chr3R 23291260 3` UTR pnt - chr3R 23291300 3` UTR pnt - chr3R 23291339 3` UTR pnt - chr3R_7_23290001 chr3R_23290001 RAL-109_75b 488 chr3R 23335446 23335466 chr3R 23335520 23335544 4 75 2.0 3.0 2.5 1.1 98 chr3R 23335446 intron pnt - chr3R 23335495 intron pnt - chr3R 23335544 intron pnt - chr3R_4_23335001 chr3R_23335001 RAL-109_75b 489 chr3R 23397099 23397116 chr3R 23397202 23397210 4 102 5.0 3.5 4.2 0.8 111 chr3R 23397099 intergenic not near genes chr3R 23397154 intergenic not near genes chr3R 23397210 intergenic not near genes chr3R_4_23395001 chr3R_23395001 RAL-109_75b 490 chr3R 23501712 23501743 chr3R 23501995 23502025 7 279 6.5 3.5 5.0 1.2 313 chr3R 23501712 intergenic not near genes chr3R 23501868 intergenic not near genes chr3R 23502025 intergenic not near genes chr3R_7_23500001 chr3R_23500001 RAL-109_75b 491 chr3R 23582819 23582825 chr3R 23582905 23582911 4 85 5.0 4.5 4.8 0.7 92 chr3R 23582819 intergenic not near genes chr3R 23582865 intergenic not near genes chr3R 23582911 intergenic not near genes chr3R_4_23580001 chr3R_23580001 RAL-109_75b 492 chr3R 23684696 23684720 chr3R 23685182 23685204 roo 4 481 3.0 5.0 4.0 0.8 508 chr3R 23684696 exon CG18754 + chr3R 23684950 intron CG18754 + chr3R 23685204 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-109_75b 493 chr3R 23698829 23698860 chr3R 23698903 23698936 12 67 2.5 3.5 3.0 3.0 107 chr3R 23698829 exon prt - chr3R 23698882 5` UTR prt - chr3R 23698936 5` UTR prt - chr3R_12_23695001 chr3R_23695001 RAL-109_75b 494 chr3R 24072084 24072093 chr3R 24072522 24072531 jockey 5 438 10.0 0.0 5.0 0.8 447 chr3R 24072084 intron 4EHP - chr3R 24072308 intron 4EHP - chr3R 24072531 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-109_75b 495 chr3R 24076922 24076941 chr3R 24078379 24078408 hobo 6 1465 2.5 2.5 2.5 1.7 1486 chr3R 24076922 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-109_75b 496 chr3R 24207223 24207227 chr3R 24212299 24212303 flea 5 5076 7.5 3.0 5.2 0.8 5080 chr3R 24207223 intron twin - chr3R 24209763 intron twin - chr3R 24212303 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-109_75b 497 chr3R 21907534 21907535 chr3R 24389465 24389465 4 2481930 15.0 3.5 9.2 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-109_75b 498 chr3R 24671221 24671237 chr3R 24671297 24671299 4 73 1.0 3.0 2.0 1.3 78 chr3R 24671221 intron slo + chr3R 24671260 intron slo + chr3R 24671299 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-109_75b 499 chr3R 24730100 24730111 chr3R 24732468 24732489 Doc 4 2375 5.0 1.0 3.0 1.0 2389 chr3R 24730100 intron tok + chr3R 24731294 intron tok + chr3R 24732489 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-109_75b 500 chr3R 24789982 24790006 chr3R 24790127 24790151 8 143 0.5 2.0 1.2 3.6 169 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790066 intron,5` UTR Ets96B +,CG13634 - chr3R 24790151 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-109_75b 501 chr3R 24974927 24974934 chr3R 24974998 24975011 4 76 2.0 3.0 2.5 1.1 84 chr3R 24974927 intergenic not near genes chr3R 24974969 intergenic not near genes chr3R 24975011 intergenic not near genes chr3R_4_24970001 chr3R_24970001 RAL-109_75b 502 chr3R 25018284 25018292 chr3R 25018332 25018339 6 59 3.0 0.5 1.8 2.1 55 chr3R 25018284 exon tnc + chr3R 25018312 exon tnc + chr3R 25018339 exon tnc + chr3R_6_25015001 chr3R_25015001 RAL-109_75b 503 chr3R 25082325 25082353 chr3R 25082407 25082417 7 74 1.5 1.0 1.2 3.2 92 chr3R 25082325 intergenic fd96Ca + chr3R 25082371 intergenic fd96Ca + chr3R 25082417 intergenic fd96Ca + chr3R_7_25080001 chr3R_25080001 RAL-109_75b 504 chr3R 25159506 25159747 chr3R 25159594 25159877 8 93 4.0 0.5 2.2 2.5 371 chr3R 25159506 intergenic not near genes chr3R 25159692 intergenic not near genes chr3R 25159877 intergenic not near genes chr3R_8_25155001 chr3R_25155001 RAL-109_75b 505 chr3R 25296169 25296175 chr3R 25296250 25296256 4 80 1.0 2.0 1.5 1.6 87 chr3R 25296169 3` UTR CG31097 - chr3R 25296212 3` UTR CG31097 - chr3R 25296256 3` UTR CG31097 - chr3R_4_25295001 chr3R_25295001 RAL-109_75b 506 chr3R 25612843 25612854 chr3R 25612949 25612958 4 106 0.0 2.5 1.2 1.8 115 chr3R 25612843 intron Npl4 - chr3R 25612900 intron Npl4 - chr3R 25612958 intron Npl4 - chr3R_4_25610001 chr3R_25610001 RAL-109_75b 507 chr3R 25765902 25765911 chr3R 25765960 25765990 4 67 2.5 1.5 2.0 1.3 88 chr3R 25765902 intergenic not near genes chr3R 25765946 intergenic not near genes chr3R 25765990 intergenic not near genes chr3R_4_25765001 chr3R_25765001 RAL-109_75b 508 chr3R 25832700 25832715 chr3R 25841881 25841897 roo 4 9182 5.0 7.0 6.0 0.6 9197 chr3R 25832700 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841897 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-109_75b 509 chr3R 25936414 25936445 chr3R 25936514 25936545 9 96 1.0 2.0 1.5 3.6 131 chr3R 25936414 intron CCAP-R - chr3R 25936480 intron CCAP-R - chr3R 25936545 intron CCAP-R - chr3R_9_25935001 chr3R_25935001 RAL-109_75b 510 chr3R 26376322 26376358 chr3R 26385482 26385490 roo 5 9151 0.5 0.0 0.2 4.2 9168 chr3R 26376322 intergenic not near genes chr3R 26380906 intergenic not near genes chr3R 26385490 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-109_75b 511 chr3R 26740295 26740320 chr3R 26740371 26740396 4 74 2.0 1.5 1.8 1.4 101 chr3R 26740295 intergenic not near genes chr3R 26740346 intergenic not near genes chr3R 26740396 intergenic not near genes chr3R_4_26740001 chr3R_26740001 RAL-109_75b 512 chr3R 26845573 26845595 chr3R 26845653 26845670 7 79 3.5 5.0 4.2 1.3 97 chr3R 26845573 intron Lerp - chr3R 26845622 intron Lerp - chr3R 26845670 intron Lerp - chr3R_7_26845001 chr3R_26845001 RAL-109_75b 513 chr3R 27140515 27140539 chr3R 27148125 27148149 412 5 7609 3.0 2.0 2.5 1.4 7634 chr3R 27140515 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148149 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-109_75b 514 chr3R 27200154 27200190 chr3R 27200241 27200277 6 86 2.5 3.5 3.0 1.5 123 chr3R 27200154 intergenic not near genes chr3R 27200216 intergenic not near genes chr3R 27200277 intergenic not near genes chr3R_6_27200001 chr3R_27200001 RAL-109_75b 515 chr3R 27327425 27327456 chr3R 27327504 27327534 9 77 1.5 1.5 1.5 3.6 109 chr3R 27327425 intergenic not near genes chr3R 27327480 intergenic not near genes chr3R 27327534 intergenic not near genes chr3R_9_27325001 chr3R_27325001 RAL-109_75b 516 chr3R 27479161 27479193 chr3R 27479269 27479281 4 104 1.0 6.0 3.5 0.9 120 chr3R 27479161 exon Cyp6a18 + chr3R 27479221 exon Cyp6a18 + chr3R 27479281 exon Cyp6a18 + chr3R_4_27475001 chr3R_27475001 RAL-109_75b 517 chr3R 27499491 27499522 chr3R 27499580 27499611 4 82 2.5 2.0 2.2 1.2 120 chr3R 27499491 intergenic not near genes chr3R 27499551 intergenic not near genes chr3R 27499611 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-109_75b 518 chr3R 27731204 27731224 chr3R 27731280 27731281 4 74 1.0 4.0 2.5 1.1 77 chr3R 27731204 intergenic not near genes chr3R 27731242 intergenic not near genes chr3R 27731281 intergenic not near genes chr3R_4_27730001 chr3R_27730001 RAL-109_75b 519 chr3R 27779268 27779285 chr3R 27779348 27779365 5 76 1.5 2.5 2.0 1.7 97 chr3R 27779268 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-109_75b 520 chr3R 27875706 27875731 chr3R 27882761 27882784 297 7 7054 1.5 2.0 1.8 2.5 7078 chr3R 27875706 intron CG34353 - chr3R 27879245 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-109_75b 521 chr3R 27996756 27996775 chr3R 27996848 27996885 11 101 2.0 4.0 3.0 2.8 129 chr3R 27996756 intergenic not near genes chr3R 27996820 intergenic not near genes chr3R 27996885 intergenic not near genes chr3R_11_27995001 chr3R_27995001 RAL-109_75b 522 chr3R 28048057 28048065 chr3R 28048118 28048127 4 72 1.0 2.5 1.8 1.4 70 chr3R 28048057 intron CG34362 + chr3R 28048092 intron CG34362 + chr3R 28048127 intron CG34362 + chr3R_4_28045001 chr3R_28045001 RAL-109_75b 523 chr3R 28126731 28126757 chr3R 28126813 28126843 6 79 3.0 2.0 2.5 1.7 112 chr3R 28126731 intergenic not near genes chr3R 28126787 intergenic not near genes chr3R 28126843 intergenic not near genes chr3R_6_28125001 chr3R_28125001 RAL-109_75b 524 chr3R 28215819 28215849 chr3R 28215896 28215925 5 75 1.0 2.5 1.8 1.8 106 chr3R 28215819 intron CG34354 + chr3R 28215872 intron CG34354 + chr3R 28215925 intron CG34354 + chr3R_5_28215001 chr3R_28215001 RAL-109_75b 525 chr3R 28407709 28407740 chr3R 28407793 28407826 5 83 3.0 3.5 3.2 1.2 117 chr3R 28407709 intergenic not near genes chr3R 28407768 intergenic not near genes chr3R 28407826 intergenic not near genes chr3R_5_28405001 chr3R_28405001 RAL-109_75b 526 chr3R 28478991 28479167 chr3R 28479084 28479250 9 89 0.5 1.0 0.8 5.0 259 chr3R 28478991 intergenic not near genes chr3R 28479120 intergenic not near genes chr3R 28479250 intergenic not near genes chr3R_9_28475001 chr3R_28475001 RAL-109_75b 527 chr3R 28736229 28736238 chr3R 28736290 28736321 4 75 1.0 0.5 0.8 2.2 92 chr3R 28736229 intergenic not near genes chr3R 28736275 intergenic not near genes chr3R 28736321 intergenic not near genes chr3R_4_28735001 chr3R_28735001 RAL-109_75b 528 chr3R 28792882 28792899 chr3R 28797975 28797994 jockey 5 5094 1.5 2.0 1.8 1.8 5112 chr3R 28792882 intergenic not near genes chr3R 28795438 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-109_75b 529 chr3R 21907534 21907536 chr3R 28831799 28831802 79 6924266 15.0 10.5 12.8 5.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_79_25365001 chr3R_25365001 RAL-109_75b 530 chr3R 28989917 28989925 chr3R 28990084 28990100 4 173 2.5 3.0 2.8 1.1 183 chr3R 28989917 intergenic not near genes chr3R 28990008 intergenic not near genes chr3R 28990100 intergenic not near genes chr3R_4_28990001 chr3R_28990001 RAL-109_75b 531 chr3R 29213064 29213093 chr3R 29213147 29213176 4 83 2.0 2.5 2.2 1.2 112 chr3R 29213064 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213176 intergenic not near genes chr3R_4_29210001 chr3R_29210001 RAL-109_75b 532 chr3R 29406629 29406641 chr3R 29407900 29407927 jockey 4 1282 5.0 2.5 3.8 0.8 1298 chr3R 29406629 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407927 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-109_75b 533 chr3R 29758940 29758966 chr3R 29759018 29759044 4 78 3.5 2.5 3.0 1.0 104 chr3R 29758940 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759044 intergenic CR44953 - chr3R_4_29755001 chr3R_29755001 RAL-109_75b 534 chr3R 29826389 29826391 chr3R 29826447 29826474 4 73 0.0 5.0 2.5 1.1 85 chr3R 29826389 intergenic not near genes chr3R 29826432 intergenic not near genes chr3R 29826474 intergenic not near genes chr3R_4_29825001 chr3R_29825001 RAL-109_75b 535 chr3R 30084854 30084870 chr3R 30086321 30086336 hobo 4 1467 2.0 2.5 2.2 1.2 1482 chr3R 30084854 intron sima + chr3R 30085595 intron sima + chr3R 30086336 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-109_75b 536 chr3R 30170767 30170787 chr3R 30170854 30170860 7 85 1.0 3.0 2.0 2.3 93 chr3R 30170767 intron CG31028 - chr3R 30170814 intron CG31028 - chr3R 30170860 intron CG31028 - chr3R_7_30170001 chr3R_30170001 RAL-109_75b 537 chr3R 30181105 30181137 chr3R 30181179 30181179 5 58 2.5 3.0 2.8 1.3 74 chr3R 30181105 3` UTR Bet5 + chr3R 30181142 3` UTR Bet5 + chr3R 30181179 3` UTR Bet5 + chr3R_5_30180001 chr3R_30180001 RAL-109_75b 538 chr3R 30252272 30252303 chr3R 30252395 30252412 9 120 5.0 5.5 5.2 1.5 140 chr3R 30252272 exon CG9682 + chr3R 30252342 exon CG9682 + chr3R 30252412 exon CG9682 + chr3R_9_30250001 chr3R_30250001 RAL-109_75b 539 chr3R 30627614 30627632 chr3R 30627691 30627695 5 75 2.5 4.5 3.5 1.1 81 chr3R 30627614 exon CG2267 - chr3R 30627654 exon CG2267 - chr3R 30627695 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-109_75b 540 chr3R 30973137 30973164 chr3R 30973298 30973324 4 160 0.5 2.0 1.2 1.8 187 chr3R 30973137 intron 5-HT7 - chr3R 30973230 intron 5-HT7 - chr3R 30973324 intron 5-HT7 - chr3R_4_30970001 chr3R_30970001 RAL-109_75b 541 chr3R 31069669 31069676 chr3R 31069755 31069771 4 93 1.0 3.0 2.0 1.3 102 chr3R 31069669 intron Sox100B + chr3R 31069720 intron Sox100B + chr3R 31069771 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-109_75b 542 chr3R 31261994 31262023 chr3R 31262091 31262100 4 88 0.0 0.5 0.2 3.3 106 chr3R 31261994 intergenic CG18672 + chr3R 31262047 intergenic CG18672 + chr3R 31262100 intergenic CG18672 +,CG18673 + chr3R_4_31260001 chr3R_31260001 RAL-109_75b 543 chr3R 31295359 31295373 chr3R 31295445 31295455 4 85 4.5 4.0 4.2 0.8 96 chr3R 31295359 intergenic not near genes chr3R 31295407 intergenic not near genes chr3R 31295455 intergenic not near genes chr3R_4_31295001 chr3R_31295001 RAL-109_75b 544 chr3R 31448622 31448630 chr3R 31448679 31448705 5 70 0.5 1.5 1.0 2.5 83 chr3R 31448622 intron Gprk2 + chr3R 31448664 intron Gprk2 + chr3R 31448705 intron Gprk2 + chr3R_5_31445001 chr3R_31445001 RAL-109_75b 545 chr3R 31649131 31649149 chr3R 31649314 31649332 7 192 1.5 1.5 1.5 2.8 201 chr3R 31649131 intron kek6 + chr3R 31649232 intron kek6 + chr3R 31649332 intron kek6 + chr3R_7_31645001 chr3R_31645001 RAL-109_75b 546 chr3R 31691532 31691558 chr3R 31696298 31696316 Doc 12 4764 3.5 5.5 4.5 2.2 4784 chr3R 31691532 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696316 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-109_75b 547 chr3R 31805126 31805155 chr3R 31805202 31805212 5 66 4.5 3.0 3.8 1.0 86 chr3R 31805126 5` UTR CG42233 - chr3R 31805169 5` UTR CG42233 - chr3R 31805212 5` UTR CG42233 - chr3R_5_31805001 chr3R_31805001 RAL-109_75b 548 chr3R 31831543 31831561 chr3R 31831616 31831640 8 77 7.0 1.5 4.2 1.5 97 chr3R 31831543 intron RhoGAP100F + chr3R 31831592 intron RhoGAP100F + chr3R 31831640 intron RhoGAP100F + chr3R_8_31830001 chr3R_31830001 RAL-109_75b 549 chr3R 31878619 31878647 chr3R 31878717 31878746 7 90 2.0 4.5 3.2 1.7 127 chr3R 31878619 intron heph - chr3R 31878682 intron heph - chr3R 31878746 intron heph - chr3R_7_31875001 chr3R_31875001 RAL-109_75b 550 chr3R 32022326 32022353 chr3R 32022428 32022455 6 96 2.0 2.0 2.0 2.0 129 chr3R 32022326 5` UTR CR45557 + chr3R 32022390 5` UTR CR45557 + chr3R 32022455 5` UTR CR45557 + chr3R_6_32020001 chr3R_32020001 RAL-109_75b 551 chr4 853285 853320 chr4 853632 853667 5 349 12.5 13.5 13.0 0.4 382 chr4 853285 intergenic CG11148 - chr4 853476 intergenic CG11148 - chr4 853667 intergenic CG11148 - chr4_5_850001 chr4_850001 RAL-109_75b 552 chrX 428442 428444 chrX 434627 434629 3S18 4 6184 2.5 1.5 2.0 1.3 6187 chrX 428442 intron CG32816 - chrX 431536 intron CG32816 - chrX 434629 intron CG32816 - chrX_4_430001 chrX_430001 RAL-109_75b 553 chrX 494603 494631 chrX 494695 494723 5 92 2.0 1.5 1.8 1.8 120 chrX 494603 intergenic CG17778 + chrX 494663 5` UTR CG17778 + chrX 494723 intron CG17778 + chrX_5_490001 chrX_490001 RAL-109_75b 554 chrX 536339 536358 chrX 536964 536981 5 625 2.0 2.5 2.2 1.6 642 chrX 536339 intron Appl + chrX 536660 intron Appl + chrX 536981 intron Appl + chrX_5_535001 chrX_535001 RAL-109_75b 555 chrX 551423 551454 chrX 558984 559016 412 7 7552 0.0 2.5 1.2 3.2 7593 chrX 551423 intron Appl + chrX 555220 intron Appl + chrX 559016 intron Appl + chrX_7_555001 chrX_555001 RAL-109_75b 556 chrX 670264 670285 chrX 670344 670365 8 78 0.0 0.5 0.2 6.7 101 chrX 670264 intergenic not near genes chrX 670314 intergenic not near genes chrX 670365 intergenic not near genes chrX_8_670001 chrX_670001 RAL-109_75b 557 chrX 715249 715257 chrX 715390 715420 5 152 3.0 0.5 1.8 1.8 171 chrX 715249 intron sdk + chrX 715334 intron sdk + chrX 715420 intron sdk + chrX_5_715001 chrX_715001 RAL-109_75b 558 chrX 827610 827627 chrX 835397 835397 roo 4 7784 5.5 0.0 2.8 1.1 7787 chrX 827610 intron CG43867 - chrX 831504 intron CG43867 - chrX 835397 intron CG43867 - chrX_4_830001 chrX_830001 RAL-109_75b 559 chrX 906706 906733 chrX 908495 908520 S-element 4 1788 2.0 6.0 4.0 0.8 1814 chrX 906706 intron CG43867 - chrX 907613 intron CG43867 - chrX 908520 intron CG43867 - chrX_4_905001 chrX_905001 RAL-109_75b 560 chrX 1416408 1416423 chrX 1416487 1416502 4 79 0.5 2.0 1.2 1.8 94 chrX 1416408 intron futsch + chrX 1416455 intron futsch + chrX 1416502 intron futsch + chrX_4_1415001 chrX_1415001 RAL-109_75b 561 chrX 1560658 1560687 chrX 1560749 1560751 4 83 2.0 1.5 1.8 1.4 93 chrX 1560658 intron Mur2B - chrX 1560704 intron Mur2B - chrX 1560751 intron Mur2B - chrX_4_1560001 chrX_1560001 RAL-109_75b 562 chrX 1627974 1628005 chrX 1635441 1635467 gtwin 7 7463 1.5 0.5 1.0 3.5 7493 chrX 1627974 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-109_75b 563 chrX 1674856 1674886 chrX 1674931 1674932 6 70 1.0 0.5 0.8 3.3 76 chrX 1674856 3` UTR CG32809 - chrX 1674894 3` UTR CG32809 - chrX 1674932 3` UTR CG32809 - chrX_6_1670001 chrX_1670001 RAL-109_75b 564 chrX 1963752 1963783 chrX 1963838 1963851 5 76 3.0 1.5 2.2 1.6 99 chrX 1963752 intron Hr4 + chrX 1963802 intron Hr4 + chrX 1963851 intron Hr4 + chrX_5_1960001 chrX_1960001 RAL-109_75b 565 chrX 2866521 2866532 chrX 2868171 2868181 4 1650 0.5 4.5 2.5 1.1 1660 chrX 2866521 intron kirre + chrX 2867351 intron kirre + chrX 2868181 intron kirre + chrX_4_2865001 chrX_2865001 RAL-109_75b 566 chrX 2888111 2888147 chrX 2888189 2888225 10 74 2.0 3.0 2.5 2.9 114 chrX 2888111 intron kirre + chrX 2888168 intron kirre + chrX 2888225 intron kirre + chrX_10_2885001 chrX_2885001 RAL-109_75b 567 chrX 2932232 2932247 chrX 2932314 2932330 5 81 2.0 2.5 2.2 1.6 98 chrX 2932232 intron,exon kirre +,CG32793 + chrX 2932281 intron,exon kirre +,CG32793 + chrX 2932330 intron,exon kirre +,CG32793 + chrX_5_2930001 chrX_2930001 RAL-109_75b 568 chrX 3726773 3726784 chrX 3730170 3730181 NOF 4 3396 0.5 2.5 1.5 1.6 3408 chrX 3726773 intron tlk + chrX 3728477 intron tlk + chrX 3730181 intron tlk + chrX_4_3725001 chrX_3725001 RAL-109_75b 569 chrX 3986877 3986893 chrX 3994494 3994526 412 8 7626 1.5 1.5 1.5 3.2 7649 chrX 3986877 intergenic not near genes chrX 3990702 intergenic not near genes chrX 3994526 intergenic not near genes chrX_8_3990001 chrX_3990001 RAL-109_75b 570 chrX 4048502 4048520 chrX 4048578 4048596 5 76 3.5 2.0 2.8 1.3 94 chrX 4048502 3` UTR CR45482 - chrX 4048549 3` UTR CR45482 - chrX 4048596 3` UTR CR45482 - chrX_5_4045001 chrX_4045001 RAL-109_75b 571 chrX 4157898 4157903 chrX 4164949 4164956 297 6 7052 3.5 0.5 2.0 2.0 7058 chrX 4157898 intron Fas2 - chrX 4161427 intron Fas2 - chrX 4164956 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-109_75b 572 chrX 4240178 4240209 chrX 4240305 4240335 6 121 1.5 2.0 1.8 2.1 157 chrX 4240178 intergenic not near genes chrX 4240256 intergenic not near genes chrX 4240335 intergenic not near genes chrX_6_4240001 chrX_4240001 RAL-109_75b 573 chrX 4717353 4717387 chrX 4717873 4717908 7 520 0.0 0.5 0.2 5.8 555 chrX 4717353 intron Proc-R + chrX 4717630 intron Proc-R + chrX 4717908 intron Proc-R + chrX_7_4715001 chrX_4715001 RAL-109_75b 574 chrX 4792378 4792412 chrX 4792811 4792818 jockey 8 429 1.0 2.0 1.5 3.2 440 chrX 4792378 intergenic not near genes chrX 4792598 intergenic not near genes chrX 4792818 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-109_75b 575 chrX 5096296 5096305 chrX 5103839 5103852 springer 4 7550 1.5 1.0 1.2 1.8 7556 chrX 5096296 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103852 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-109_75b 576 chrX 5131404 5131428 chrX 5131482 5131500 6 74 0.0 2.5 1.2 2.7 96 chrX 5131404 intron,intron CG15465 +,rg + chrX 5131452 intron,intron CG15465 +,rg + chrX 5131500 intron,intron CG15465 +,rg + chrX_6_5130001 chrX_5130001 RAL-109_75b 577 chrX 5204217 5204218 chrX 16988366 16988383 HMS-Beagle 4 11784156 12.0 6.0 9.0 0.4 11784166 chrX 5204217 intron,intron CG15465 +,rg + chrX 11096300 intergenic not near genes chrX 16988383 intron CG45002 - chrX_4_11095001 chrX_11095001 RAL-109_75b 578 chrX 5220391 5220422 chrX 5220632 5220638 5 227 0.0 1.5 0.8 2.8 247 chrX 5220391 intron,intron CG15465 +,rg + chrX 5220514 intron,intron CG15465 +,rg + chrX 5220638 intron,intron CG15465 +,rg + chrX_5_5220001 chrX_5220001 RAL-109_75b 579 chrX 5798866 5798889 chrX 5799027 5799050 4 161 0.5 1.0 0.8 2.2 184 chrX 5798866 intergenic not near genes chrX 5798958 intergenic not near genes chrX 5799050 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-109_75b 580 chrX 5883815 5883841 chrX 5884055 5884056 pogo 7 237 0.5 1.0 0.8 3.9 241 chrX 5883815 intron CR45668 - chrX 5883936 intron CR45668 - chrX 5884056 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-109_75b 581 chrX 6392879 6392897 chrX 6397629 6397648 Doc 8 4750 3.5 1.5 2.5 2.3 4769 chrX 6392879 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397648 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-109_75b 582 chrX 6562828 6562850 chrX 6571310 6571326 Tirant 4 8480 3.0 2.5 2.8 1.1 8498 chrX 6562828 intron CG34417 + chrX 6567077 intron CG34417 + chrX 6571326 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-109_75b 583 chrX 6897582 6897705 chrX 6897659 6897815 4 102 1.5 2.0 1.8 1.4 233 chrX 6897582 intergenic not near genes chrX 6897698 intergenic not near genes chrX 6897815 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-109_75b 584 chrX 7702911 7702926 chrX 7703343 7703365 jockey 4 436 3.0 1.5 2.2 1.2 454 chrX 7702911 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-109_75b 585 chrX 7832435 7832456 chrX 7832524 7832527 5 85 0.5 0.5 0.5 3.3 92 chrX 7832435 intron CG1402 + chrX 7832481 intron CG1402 + chrX 7832527 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-109_75b 586 chrX 7845723 7845742 chrX 7847214 7847233 hopper2 4 1491 1.5 1.5 1.5 1.6 1510 chrX 7845723 intergenic not near genes chrX 7846478 intergenic not near genes chrX 7847233 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-109_75b 587 chrX 8075147 8075157 chrX 8075254 8075266 4 107 3.0 2.5 2.8 1.1 119 chrX 8075147 exon Upf2 - chrX 8075206 5` UTR Upf2 - chrX 8075266 5` UTR Upf2 - chrX_4_8075001 chrX_8075001 RAL-109_75b 588 chrX 8748013 8748025 chrX 8748095 8748106 6 82 3.5 4.0 3.8 1.2 93 chrX 8748013 intergenic not near genes chrX 8748060 intergenic not near genes chrX 8748106 intergenic not near genes chrX_6_8745001 chrX_8745001 RAL-109_75b 589 chrX 8922326 8922358 chrX 8922760 8922791 jockey 4 434 2.5 0.0 1.2 1.8 465 chrX 8922326 intron rdgA + chrX 8922558 intron rdgA + chrX 8922791 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-109_75b 590 chrX 9527930 9527952 chrX 9528006 9528006 6 72 2.0 2.0 2.0 2.0 76 chrX 9527930 intron CG32700 - chrX 9527968 intron CG32700 - chrX 9528006 intron CG32700 - chrX_6_9525001 chrX_9525001 RAL-109_75b 591 chrX 9575803 9575815 chrX 9576113 9576116 mdg3 4 312 2.0 2.5 2.2 1.2 313 chrX 9575803 intron,exon CG32699 -,CG42395 - chrX 9575960 intron,intron CG32699 -,CG42395 - chrX 9576116 intron,intron CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-109_75b 592 chrX 9791860 9791880 chrX 9791957 9791977 4 97 1.5 0.5 1.0 2.0 117 chrX 9791860 intron CG32698 + chrX 9791918 intron CG32698 + chrX 9791977 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-109_75b 593 chrX 10330428 10330671 chrX 10330861 10330867 4 264 5.5 6.0 5.8 0.6 439 chrX 10330428 exon CG15306 - chrX 10330648 exon CG15306 - chrX 10330867 exon CG15306 - chrX_4_10330001 chrX_10330001 RAL-109_75b 594 chrX 10367188 10367208 chrX 10367297 10367317 6 106 2.0 1.0 1.5 2.4 129 chrX 10367188 exon CG32679 - chrX 10367252 intron CG32679 - chrX 10367317 intron CG32679 - chrX_6_10365001 chrX_10365001 RAL-109_75b 595 chrX 10675278 10675307 chrX 10675641 10675670 5 363 1.0 1.0 1.0 2.5 392 chrX 10675278 intron X11Lbeta + chrX 10675474 intron X11Lbeta + chrX 10675670 intron X11Lbeta + chrX_5_10675001 chrX_10675001 RAL-109_75b 596 chrX 10803040 10803049 chrX 10803124 10803129 4 84 2.0 1.0 1.5 1.6 89 chrX 10803040 intron Imp - chrX 10803084 intron Imp - chrX 10803129 intron Imp - chrX_4_10800001 chrX_10800001 RAL-109_75b 597 chrX 11184262 11184269 chrX 11189338 11189343 flea 4 5076 2.0 0.0 1.0 2.0 5081 chrX 11184262 intergenic not near genes chrX 11186802 intergenic not near genes chrX 11189343 intergenic not near genes chrX_4_11185001 chrX_11185001 RAL-109_75b 598 chrX 11268562 11268590 chrX 11270054 11270081 hopper2 4 1492 1.5 4.0 2.8 1.1 1519 chrX 11268562 intron CG44422 - chrX 11269322 intron CG44422 - chrX 11270081 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-109_75b 599 chrX 12043836 12043851 chrX 12043925 12043940 7 89 1.0 0.0 0.5 4.7 104 chrX 12043836 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043888 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043940 5` UTR,5` UTR CR43960 +,Ten-a + chrX_7_12040001 chrX_12040001 RAL-109_75b 600 chrX 12094047 12094055 chrX 12094139 12094147 4 92 1.0 2.0 1.5 1.6 100 chrX 12094047 intron,intron CR43960 +,Ten-a + chrX 12094097 intron,intron CR43960 +,Ten-a + chrX 12094147 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-109_75b 601 chrX 12971694 12971720 chrX 12971767 12971780 7 70 2.0 5.0 3.5 1.6 86 chrX 12971694 intron,exon CR43636 -,CG15721 + chrX 12971737 intron,exon CR43636 -,CG15721 + chrX 12971780 intron,exon CR43636 -,CG15721 + chrX_7_12970001 chrX_12970001 RAL-109_75b 602 chrX 13172370 13172382 chrX 13172424 13172458 5 66 2.5 1.5 2.0 1.7 88 chrX 13172370 exon CG34411 - chrX 13172414 intron CG34411 - chrX 13172458 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-109_75b 603 chrX 14105038 14105055 chrX 14114171 14114205 roo 4 9135 2.0 1.5 1.8 1.4 9167 chrX 14105038 intergenic not near genes chrX 14109622 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_4_14105001 chrX_14105001 RAL-109_75b 604 chrX 14131493 14131522 chrX 14131574 14131601 4 80 2.0 4.5 3.2 1.0 108 chrX 14131493 intergenic not near genes chrX 14131547 intergenic not near genes chrX 14131601 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-109_75b 605 chrX 14178888 14178900 chrX 14179093 14179107 4 208 1.0 0.5 0.8 2.2 219 chrX 14178888 intergenic CG11581 + chrX 14178998 intergenic not near genes chrX 14179107 intergenic not near genes chrX_4_14175001 chrX_14175001 RAL-109_75b 606 chrX 14579106 14579132 chrX 14579185 14579214 5 80 1.5 1.0 1.2 2.3 108 chrX 14579106 intergenic not near genes chrX 14579160 intergenic not near genes chrX 14579214 intergenic not near genes chrX_5_14575001 chrX_14575001 RAL-109_75b 607 chrX 15256506 15256530 chrX 15256694 15256718 6 186 1.5 1.5 1.5 2.4 212 chrX 15256506 intergenic not near genes chrX 15256612 intergenic not near genes chrX 15256718 intergenic not near genes chrX_6_15255001 chrX_15255001 RAL-109_75b 608 chrX 15273711 15273734 chrX 15274870 15274901 1360 4 1158 9.0 2.0 5.5 0.6 1190 chrX 15273711 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274901 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-109_75b 609 chrX 15369846 15369864 chrX 15369911 15369925 6 65 1.0 1.5 1.2 2.7 79 chrX 15369846 intron acj6 - chrX 15369886 intron acj6 - chrX 15369925 intron acj6 - chrX_6_15365001 chrX_15365001 RAL-109_75b 610 chrX 15413048 15413083 chrX 15417350 15417370 Juan 7 4296 2.5 1.0 1.8 2.5 4322 chrX 15413048 intron Cngl - chrX 15415209 intron Cngl - chrX 15417370 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-109_75b 611 chrX 15678049 15678066 chrX 15678126 15678143 5 77 2.5 4.0 3.2 1.2 94 chrX 15678049 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-109_75b 612 chrX 16329438 16329447 chrX 16329521 16329530 4 83 0.0 3.5 1.8 1.4 92 chrX 16329438 intron CG9919 - chrX 16329484 intron CG9919 - chrX 16329530 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-109_75b 613 chrX 16689649 16689656 chrX 16689709 16689742 5 68 1.0 1.5 1.2 2.3 93 chrX 16689649 intron Sep4 - chrX 16689696 intron Sep4 - chrX 16689742 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-109_75b 614 chrX 17011967 17012000 chrX 17012048 17012083 9 75 3.5 5.5 4.5 1.6 116 chrX 17011967 intron CG45002 - chrX 17012025 intron CG45002 - chrX 17012083 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-109_75b 615 chrX 17011548 17011569 chrX 17014674 17014702 9 3129 16.5 2.0 9.2 0.9 3154 chrX 17011548 intron CG45002 - chrX 17013125 intron CG45002 - chrX 17014702 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-109_75b 616 chrX 17061568 17061595 chrX 17061689 17061699 6 119 2.0 1.5 1.8 2.1 131 chrX 17061568 intron CG45002 - chrX 17061634 intron CG45002 - chrX 17061699 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-109_75b 617 chrX 17792949 17792984 chrX 17796247 17796267 flea 6 3293 1.5 2.5 2.0 2.0 3318 chrX 17792949 intron OdsH + chrX 17794608 intron OdsH + chrX 17796267 intron OdsH + chrX_6_17790001 chrX_17790001 RAL-109_75b 618 chrX 17837382 17837391 chrX 17837435 17837435 4 50 3.0 3.0 3.0 1.0 53 chrX 17837382 intron CG6398 + chrX 17837408 intron CG6398 + chrX 17837435 intron CG6398 + chrX_4_17835001 chrX_17835001 RAL-109_75b 619 chrX 17978557 17978572 chrX 17978623 17978632 4 65 4.5 2.0 3.2 1.0 75 chrX 17978557 intron Sh - chrX 17978594 intron Sh - chrX 17978632 intron Sh - chrX_4_17975001 chrX_17975001 RAL-109_75b 620 chrX 18048769 18048799 chrX 18048885 18048896 4 105 0.0 0.0 0.0 4.0 127 chrX 18048769 intron Sh - chrX 18048832 intron Sh - chrX 18048896 intron Sh - chrX_4_18045001 chrX_18045001 RAL-109_75b 621 chrX 18161948 18161979 chrX 18162028 18162060 4 81 0.0 2.0 1.0 2.0 112 chrX 18161948 intron Frq1 + chrX 18162004 intron Frq1 + chrX 18162060 intron Frq1 + chrX_4_18160001 chrX_18160001 RAL-109_75b 622 chrX 18490046 18490055 chrX 18490199 18490210 5 154 1.0 3.0 2.0 1.7 164 chrX 18490046 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490210 intergenic not near genes chrX_5_18490001 chrX_18490001 RAL-109_75b 623 chrX 18947516 18947530 chrX 18947593 18947623 5 82 1.5 0.0 0.8 2.8 107 chrX 18947516 intron CG43759 + chrX 18947570 intron CG43759 + chrX 18947623 intron CG43759 + chrX_5_18945001 chrX_18945001 RAL-109_75b 624 chrX 19729630 19729639 chrX 19729690 19729712 4 74 2.0 1.0 1.5 1.6 82 chrX 19729630 3` UTR CG12531 + chrX 19729671 3` UTR CG12531 + chrX 19729712 3` UTR CG12531 + chrX_4_19725001 chrX_19725001 RAL-109_75b 625 chrX 19812743 19812758 chrX 19816033 19816060 Gypsy12A_LTR 4 3294 11.5 4.0 7.8 0.5 3317 chrX 19812743 5` UTR skpD + chrX 19814402 intergenic not near genes chrX 19816060 intergenic skpC + chrX_4_19810001 chrX_19810001 RAL-109_75b 626 chrX 19897397 19897415 chrX 19897473 19897482 4 74 0.5 0.5 0.5 2.7 85 chrX 19897397 intron Hers + chrX 19897440 intron Hers + chrX 19897482 intron Hers + chrX_4_19895001 chrX_19895001 RAL-109_75b 627 chrX 19992420 19992435 chrX 19992494 19992511 6 74 4.0 4.5 4.2 1.2 91 chrX 19992420 intergenic not near genes chrX 19992466 intergenic not near genes chrX 19992511 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-109_75b 628 chrX 19992976 19992992 chrX 19993052 19993062 4 73 1.5 1.0 1.2 1.8 86 chrX 19992976 intergenic not near genes chrX 19993019 intergenic not near genes chrX 19993062 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-109_75b 629 chrX 20105202 20105229 chrX 20105305 20105332 8 107 21.5 22.5 22.0 0.3 130 chrX 20105202 intergenic not near genes chrX 20105267 intergenic not near genes chrX 20105332 intergenic not near genes chrX_8_20105001 chrX_20105001 RAL-109_75b 630 chrX 20312881 20312908 chrX 20312959 20312961 4 71 1.0 1.5 1.2 1.8 80 chrX 20312881 intron CG1504 - chrX 20312921 intron CG1504 - chrX 20312961 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-109_75b 631 chrX 20377330 20377339 chrX 20378797 20378805 hobo 4 1467 5.0 2.0 3.5 0.9 1475 chrX 20377330 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378805 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-109_75b 632 chrX 20578084 20578104 chrX 20578159 20578183 4 78 0.5 0.5 0.5 2.7 99 chrX 20578084 intergenic not near genes chrX 20578134 intergenic not near genes chrX 20578183 intergenic not near genes chrX_4_20575001 chrX_20575001 RAL-109_75b 633 chrX 20594329 20594332 chrX 20594398 20594414 4 76 1.0 3.5 2.2 1.2 85 chrX 20594329 intron RunxA - chrX 20594372 intron RunxA - chrX 20594414 intron RunxA - chrX_4_20590001 chrX_20590001 RAL-109_75b 634 chrX 20763494 20763506 chrX 20763548 20763585 4 66 2.5 4.0 3.2 1.0 91 chrX 20763494 3` UTR shakB - chrX 20763540 3` UTR shakB - chrX 20763585 3` UTR shakB - chrX_4_20760001 chrX_20760001 RAL-109_75b 635 chrX 20940725 20940756 chrX 20942194 20942225 hobo 7 1466 2.5 3.5 3.0 1.8 1500 chrX 20940725 intergenic not near genes chrX 20941475 intergenic not near genes chrX 20942225 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-109_75b 636 chrX 21042555 21042588 chrX 21045340 21045374 13 2788 13.5 20.5 17.0 0.7 2819 chrX 21042555 exon Mgstl + chrX 21043964 exon,3` UTR Mgstl +,CR44431 - chrX 21045374 intron Cbs + chrX_13_21040001 chrX_21040001 RAL-109_75b 637 chrX 21188843 21188870 chrX 21188931 21188943 4 78 2.0 0.5 1.2 1.8 100 chrX 21188843 intergenic CR45506 + chrX 21188893 intergenic CR45506 + chrX 21188943 intergenic CR45506 + chrX_4_21185001 chrX_21185001 RAL-109_75b 638 chrX 21330828 21330832 chrX 21330904 21330908 4 76 1.5 2.0 1.8 1.4 80 chrX 21330828 3` UTR tty - chrX 21330868 3` UTR tty - chrX 21330908 3` UTR tty - chrX_4_21330001 chrX_21330001 RAL-109_75b 639 chrX 21516990 21517017 chrX 21517064 21517095 5 77 3.0 2.0 2.5 1.4 105 chrX 21516990 intron CR45082 - chrX 21517042 intron CR45082 - chrX 21517095 intron CR45082 - chrX_5_21515001 chrX_21515001 RAL-109_75b 640 chrX 21565414 21565445 chrX 21565492 21565523 5 73 0.0 0.5 0.2 4.2 109 chrX 21565414 intergenic not near genes chrX 21565468 intergenic not near genes chrX 21565523 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-109_75b 641 chrX 22697502 22697523 chrX 22701799 22701802 Juan 5 4293 1.0 2.5 1.8 1.8 4300 chrX 22697502 intron CR44997 + chrX 22699652 intron CR44997 + chrX 22701802 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-109_75b 642 chrY 975803 975828 chrY 975872 975909 5 82 105.0 114.5 109.8 0.0 106 chrY 975803 intergenic not near genes chrY 975856 intergenic not near genes chrY 975909 intergenic not near genes chrY_5_975001 chrY_975001 RAL-109_75b