SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47491 chr2L 52565 52595 jockey 8 5104 3.0 2.0 2.5 2.3 5135 chr2L 47460 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52595 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-105 2 chr2L 325137 325150 chr2L 325214 325227 4 76 5.0 5.0 5.0 0.7 90 chr2L 325137 intron Plc21C + chr2L 325182 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-105 3 chr2L 347885 347919 chr2L 355385 355419 blood 7 7500 1.5 1.0 1.2 3.2 7534 chr2L 347885 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355419 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-105 4 chr2L 467356 467489 chr2L 467455 467578 7 91 3.5 3.5 3.5 1.6 222 chr2L 467356 intron CG4297 - chr2L 467467 intron CG4297 - chr2L 467578 intron CG4297 - chr2L_7_465001 chr2L_465001 RAL-105 5 chr2L 666282 666301 chr2L 666358 666377 5 76 2.0 0.5 1.2 2.3 95 chr2L 666282 intron ds - chr2L 666330 intron ds - chr2L 666377 intron ds - chr2L_5_665001 chr2L_665001 RAL-105 6 chr2L 686937 686950 chr2L 695976 695983 roo 6 9037 1.5 4.0 2.8 1.6 9046 chr2L 686937 intron ds - chr2L 691460 intron ds - chr2L 695983 intron ds - chr2L_6_690001 chr2L_690001 RAL-105 7 chr2L 736887 736899 chr2L 736992 737004 4 105 1.5 0.5 1.0 2.0 117 chr2L 736887 intergenic Eaat2 - chr2L 736946 intergenic Eaat2 - chr2L 737004 intergenic Eaat2 - chr2L_4_735001 chr2L_735001 RAL-105 8 chr2L 763607 763622 chr2L 763673 763698 9 75 1.5 4.0 2.8 2.4 91 chr2L 763607 intergenic not near genes chr2L 763652 intergenic not near genes chr2L 763698 intergenic not near genes chr2L_9_760001 chr2L_760001 RAL-105 9 chr2L 764553 764570 chr2L 764653 764670 6 100 2.0 2.5 2.2 1.9 117 chr2L 764553 intergenic not near genes chr2L 764612 intergenic not near genes chr2L 764670 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-105 10 chr2L 770466 770486 chr2L 772246 772247 Bari1 9 1777 7.0 4.0 5.5 1.4 1781 chr2L 770466 intergenic not near genes chr2L 771356 intergenic not near genes chr2L 772247 intergenic CR44614 + chr2L_9_770001 chr2L_770001 RAL-105 11 chr2L 844938 844967 chr2L 845025 845054 8 84 2.0 3.5 2.8 2.1 116 chr2L 844938 intron drongo - chr2L 844996 intron drongo - chr2L 845054 intron drongo - chr2L_8_840001 chr2L_840001 RAL-105 12 chr2L 877841 877861 chr2L 877922 877941 9 81 3.5 1.0 2.2 2.8 100 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-105 13 chr2L 906553 906568 chr2L 906634 906649 5 81 0.0 3.5 1.8 1.8 96 chr2L 906553 intergenic not near genes chr2L 906601 intergenic not near genes chr2L 906649 intergenic not near genes chr2L_5_905001 chr2L_905001 RAL-105 14 chr2L 976879 976903 chr2L 984515 984539 roo 4 7636 1.0 0.5 0.8 2.2 7660 chr2L 976879 intergenic not near genes chr2L 980709 intergenic not near genes chr2L 984539 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-105 15 chr2L 1039898 1039923 chr2L 1040580 1040615 8 682 1.0 2.0 1.5 3.2 717 chr2L 1039898 intron IA-2 - chr2L 1040256 intron IA-2 - chr2L 1040615 intron IA-2 - chr2L_8_1040001 chr2L_1040001 RAL-105 16 chr2L 1156867 1156894 chr2L 1156972 1156999 4 105 2.0 2.0 2.0 1.3 132 chr2L 1156867 intron capt - chr2L 1156933 intron capt - chr2L 1156999 intron capt - chr2L_4_1155001 chr2L_1155001 RAL-105 17 chr2L 1220132 1220161 chr2L 1227598 1227627 blood 5 7466 3.0 1.5 2.2 1.6 7495 chr2L 1220132 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-105 18 chr2L 1312870 1312893 chr2L 1312957 1312980 8 85 2.5 2.0 2.2 2.5 110 chr2L 1312870 intergenic not near genes chr2L 1312925 intergenic not near genes chr2L 1312980 intergenic not near genes chr2L_8_1310001 chr2L_1310001 RAL-105 19 chr2L 1332203 1332243 chr2L 1332280 1332320 9 76 3.0 5.0 4.0 1.8 117 chr2L 1332203 intergenic not near genes chr2L 1332262 intergenic not near genes chr2L 1332320 intergenic not near genes chr2L_9_1330001 chr2L_1330001 RAL-105 20 chr2L 1436623 1436654 chr2L 1436709 1436740 6 86 0.5 0.5 0.5 4.0 117 chr2L 1436623 intergenic not near genes chr2L 1436682 intergenic not near genes chr2L 1436740 intergenic not near genes chr2L_6_1435001 chr2L_1435001 RAL-105 21 chr2L 1466087 1466098 chr2L 1470420 1470433 4 4334 24.5 19.0 21.8 0.2 4346 chr2L 1466087 intergenic not near genes chr2L 1468260 intergenic not near genes chr2L 1470433 intergenic not near genes chr2L_4_1465001 chr2L_1465001 RAL-105 22 chr2L 1503430 1503459 chr2L 1503507 1503536 6 78 1.0 2.5 1.8 2.1 106 chr2L 1503430 intron CR44064 + chr2L 1503483 intron CR44064 + chr2L 1503536 intron CR44064 + chr2L_6_1500001 chr2L_1500001 RAL-105 23 chr2L 1564467 1564487 chr2L 1564553 1564574 7 86 2.5 3.5 3.0 1.8 107 chr2L 1564467 intron haf + chr2L 1564520 intron haf + chr2L 1564574 intron haf + chr2L_7_1560001 chr2L_1560001 RAL-105 24 chr2L 1570686 1570719 chr2L 1573558 1573591 F-element 5 2872 1.0 2.0 1.5 2.0 2905 chr2L 1570686 intron haf + chr2L 1572138 intron haf + chr2L 1573591 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-105 25 chr2L 1678988 1679007 chr2L 1686453 1686472 blood 6 7465 0.5 4.0 2.2 1.9 7484 chr2L 1678988 intron chinmo + chr2L 1682730 intron chinmo + chr2L 1686472 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-105 26 chr2L 1711358 1711385 chr2L 1711680 1711708 mdg3 11 323 1.5 3.0 2.2 3.4 350 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711708 3` UTR frtz - chr2L_11_1710001 chr2L_1710001 RAL-105 27 chr2L 1837827 1837832 chr2L 1838044 1838059 5 224 1.5 2.5 2.0 1.7 232 chr2L 1837827 intron wry + chr2L 1837943 intron wry + chr2L 1838059 intron wry + chr2L_5_1835001 chr2L_1835001 RAL-105 28 chr2L 1842303 1842318 chr2L 1842379 1842394 5 76 1.0 2.5 1.8 1.8 91 chr2L 1842303 intron wry + chr2L 1842348 intron wry + chr2L 1842394 intron wry + chr2L_5_1840001 chr2L_1840001 RAL-105 29 chr2L 1891614 1891654 chr2L 1891702 1891742 9 87 1.5 2.5 2.0 3.0 128 chr2L 1891614 intron CG7337 + chr2L 1891678 intron CG7337 + chr2L 1891742 intron CG7337 + chr2L_9_1890001 chr2L_1890001 RAL-105 30 chr2L 1918218 1918251 chr2L 1918309 1918343 14 90 1.5 1.0 1.2 6.4 125 chr2L 1918218 intron CG7337 + chr2L 1918280 intron CG7337 + chr2L 1918343 intron CG7337 + chr2L_14_1915001 chr2L_1915001 RAL-105 31 chr2L 1946735 1946761 chr2L 1946811 1946837 6 76 0.5 0.0 0.2 5.0 102 chr2L 1946735 intergenic CG33673 - chr2L 1946786 intergenic CG33673 - chr2L 1946837 intergenic CG33673 - chr2L_6_1945001 chr2L_1945001 RAL-105 32 chr2L 1993195 1993230 chr2L 1993281 1993314 6 85 1.0 0.5 0.8 3.3 119 chr2L 1993195 intergenic not near genes chr2L 1993254 intergenic not near genes chr2L 1993314 intergenic not near genes chr2L_6_1990001 chr2L_1990001 RAL-105 33 chr2L 1999575 1999582 chr2L 1999737 1999740 4 162 0.5 4.5 2.5 1.1 165 chr2L 1999575 intron CG33543 - chr2L 1999658 intron CG33543 - chr2L 1999740 intron CG33543 - chr2L_4_1995001 chr2L_1995001 RAL-105 34 chr2L 2084407 2084426 chr2L 2085354 2085373 4 947 1.5 2.0 1.8 1.4 966 chr2L 2084407 intron,5` UTR dpr3 -,CR44055 + chr2L 2084890 intron dpr3 - chr2L 2085373 intron dpr3 - chr2L_4_2080001 chr2L_2080001 RAL-105 35 chr2L 2100382 2100401 chr2L 2109526 2109552 roo 9 9149 1.0 2.5 1.8 3.2 9170 chr2L 2100382 intron dpr3 - chr2L 2104967 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-105 36 chr2L 2112125 2112142 chr2L 2119773 2119803 opus 4 7654 0.5 4.0 2.2 1.2 7678 chr2L 2112125 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119803 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-105 37 chr2L 2260800 2260836 chr2L 2260886 2260922 8 86 3.0 0.5 1.8 2.9 122 chr2L 2260800 intergenic not near genes chr2L 2260861 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_8_2260001 chr2L_2260001 RAL-105 38 chr2L 2294045 2294074 chr2L 2299250 2299272 copia 6 5195 3.0 3.0 3.0 1.5 5227 chr2L 2294045 intergenic not near genes chr2L 2296658 intergenic not near genes chr2L 2299272 intergenic not near genes chr2L_6_2295001 chr2L_2295001 RAL-105 39 chr2L 2311072 2311079 chr2L 2311168 2311175 4 96 4.0 1.0 2.5 1.1 103 chr2L 2311072 intron CG9967 - chr2L 2311124 intron CG9967 - chr2L 2311175 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-105 40 chr2L 2380431 2380460 chr2L 2380507 2380535 7 75 1.5 2.5 2.0 2.3 104 chr2L 2380431 3` UTR Atxn7 + chr2L 2380483 3` UTR Atxn7 + chr2L 2380535 intergenic Atxn7 + chr2L_7_2380001 chr2L_2380001 RAL-105 41 chr2L 2428785 2428820 chr2L 2428884 2428919 11 97 2.0 1.5 1.8 3.9 134 chr2L 2428785 5` UTR dpp + chr2L 2428852 5` UTR dpp + chr2L 2428919 5` UTR dpp + chr2L_11_2425001 chr2L_2425001 RAL-105 42 chr2L 2503726 2503730 chr2L 2504497 2504497 4 774 5.5 2.5 4.0 0.8 771 chr2L 2503726 intergenic not near genes chr2L 2504112 intergenic not near genes chr2L 2504497 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-105 43 chr2L 2565554 2565563 chr2L 2571627 2571635 297 5 6073 1.5 0.5 1.0 2.5 6081 chr2L 2565554 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571635 intron Cyp309a2 - chr2L_5_2565001 chr2L_2565001 RAL-105 44 chr2L 2661197 2661234 chr2L 2663034 2663072 I-element 4 1838 1.0 2.0 1.5 1.6 1875 chr2L 2661197 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663072 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-105 45 chr2L 2698867 2698887 chr2L 2698954 2698973 4 87 1.0 2.0 1.5 1.6 106 chr2L 2698867 intron CG31690 + chr2L 2698920 intron CG31690 + chr2L 2698973 intron CG31690 + chr2L_4_2695001 chr2L_2695001 RAL-105 46 chr2L 2793949 2793972 chr2L 2794029 2794050 6 77 3.0 4.5 3.8 1.2 101 chr2L 2793949 intron Syt1 - chr2L 2794000 intron Syt1 - chr2L 2794050 intron Syt1 - chr2L_6_2790001 chr2L_2790001 RAL-105 47 chr2L 2826546 2826576 chr2L 2826638 2826661 7 88 0.0 3.0 1.5 2.8 115 chr2L 2826546 intron Duox - chr2L 2826604 intron Duox - chr2L 2826661 intron Duox - chr2L_7_2825001 chr2L_2825001 RAL-105 48 chr2L 2909899 2909932 chr2L 2909983 2910016 6 82 2.5 1.0 1.8 2.1 117 chr2L 2909899 intron lilli + chr2L 2909958 intron lilli + chr2L 2910016 intron lilli + chr2L_6_2905001 chr2L_2905001 RAL-105 49 chr2L 3073029 3073059 chr2L 3078232 3078262 copia 10 5203 1.0 3.5 2.2 3.1 5233 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078262 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-105 50 chr2L 3171187 3171217 chr2L 3171270 3171300 6 83 0.5 4.0 2.2 1.9 113 chr2L 3171187 intergenic CG44002 - chr2L 3171244 intergenic CG44002 - chr2L 3171300 intergenic CG44002 - chr2L_6_3170001 chr2L_3170001 RAL-105 51 chr2L 3192207 3192241 chr2L 3192318 3192352 6 108 1.5 4.0 2.8 1.6 145 chr2L 3192207 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192352 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-105 52 chr2L 3228209 3228238 chr2L 3228286 3228316 6 77 1.5 2.0 1.8 2.1 107 chr2L 3228209 intergenic not near genes chr2L 3228262 intergenic not near genes chr2L 3228316 intergenic not near genes chr2L_6_3225001 chr2L_3225001 RAL-105 53 chr2L 3251495 3251526 chr2L 3259059 3259091 springer 6 7565 1.0 1.5 1.2 2.7 7596 chr2L 3251495 intergenic not near genes chr2L 3255293 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-105 54 chr2L 3291247 3291263 chr2L 3291326 3291343 5 80 1.0 5.0 3.0 1.2 96 chr2L 3291247 3` UTR CG9664 - chr2L 3291295 3` UTR CG9664 - chr2L 3291343 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-105 55 chr2L 3381592 3381621 chr2L 3381665 3381700 9 74 2.5 2.5 2.5 2.6 108 chr2L 3381592 intergenic not near genes chr2L 3381646 intergenic not near genes chr2L 3381700 intergenic not near genes chr2L_9_3380001 chr2L_3380001 RAL-105 56 chr2L 3386250 3386261 chr2L 3386343 3386365 5 100 7.0 4.5 5.8 0.7 115 chr2L 3386250 intergenic not near genes chr2L 3386308 intergenic not near genes chr2L 3386365 intergenic CR45301 - chr2L_5_3385001 chr2L_3385001 RAL-105 57 chr2L 3497840 3497867 chr2L 3497918 3497945 6 78 2.0 0.5 1.2 2.7 105 chr2L 3497840 intron tim - chr2L 3497892 intron tim - chr2L 3497945 intron tim - chr2L_6_3495001 chr2L_3495001 RAL-105 58 chr2L 3646818 3646833 chr2L 3646900 3646915 5 82 3.5 3.0 3.2 1.2 97 chr2L 3646818 intron for - chr2L 3646866 intron for - chr2L 3646915 intron for - chr2L_5_3645001 chr2L_3645001 RAL-105 59 chr2L 3649797 3649819 chr2L 3655000 3655022 copia 4 5203 2.0 1.5 1.8 1.4 5225 chr2L 3649797 intron for - chr2L 3652410 intron for - chr2L 3655022 intron for - chr2L_4_3650001 chr2L_3650001 RAL-105 60 chr2L 3693832 3693847 chr2L 3693917 3693932 4 85 1.5 1.5 1.5 1.6 100 chr2L 3693832 exon Acp24A4 - chr2L 3693882 5` UTR Acp24A4 - chr2L 3693932 intergenic Acp24A4 -,CG43165 - chr2L_4_3690001 chr2L_3690001 RAL-105 61 chr2L 3828805 3828819 chr2L 3828921 3828935 5 116 0.0 1.0 0.5 3.3 130 chr2L 3828805 intergenic not near genes chr2L 3828870 intergenic not near genes chr2L 3828935 intergenic not near genes chr2L_5_3825001 chr2L_3825001 RAL-105 62 chr2L 3997572 3997579 chr2L 3997647 3997667 4 84 0.0 4.5 2.2 1.2 95 chr2L 3997572 intergenic not near genes chr2L 3997620 intergenic not near genes chr2L 3997667 intergenic not near genes chr2L_4_3995001 chr2L_3995001 RAL-105 63 chr2L 4014653 4014680 chr2L 4014796 4014823 6 143 2.0 1.5 1.8 2.1 170 chr2L 4014653 intergenic not near genes chr2L 4014738 intergenic not near genes chr2L 4014823 intergenic not near genes chr2L_6_4010001 chr2L_4010001 RAL-105 64 chr2L 4060176 4060195 chr2L 4060252 4060270 4 75 0.0 1.5 0.8 2.2 94 chr2L 4060176 intron ed + chr2L 4060223 intron ed + chr2L 4060270 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-105 65 chr2L 4064922 4064951 chr2L 4065039 4065068 4 117 1.0 1.5 1.2 1.8 146 chr2L 4064922 intron ed + chr2L 4064995 intron ed + chr2L 4065068 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-105 66 chr2L 4150626 4150655 chr2L 4150705 4150735 9 77 0.0 1.5 0.8 5.0 109 chr2L 4150626 exon CG2955 + chr2L 4150680 exon CG2955 + chr2L 4150735 exon CG2955 + chr2L_9_4150001 chr2L_4150001 RAL-105 67 chr2L 4166399 4166407 chr2L 4166479 4166490 6 82 1.5 5.0 3.2 1.4 91 chr2L 4166399 intergenic Or24a - chr2L 4166444 intergenic Or24a - chr2L 4166490 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-105 68 chr2L 4192984 4193009 chr2L 4193065 4193090 7 81 1.5 1.0 1.2 3.2 106 chr2L 4192984 intron CG3714 - chr2L 4193037 intron CG3714 - chr2L 4193090 intron CG3714 - chr2L_7_4190001 chr2L_4190001 RAL-105 69 chr2L 4351472 4351501 chr2L 4351548 4351577 12 75 3.5 3.0 3.2 2.9 105 chr2L 4351472 intergenic CR44700 + chr2L 4351524 intergenic CR44700 + chr2L 4351577 intergenic CR44700 + chr2L_12_4350001 chr2L_4350001 RAL-105 70 chr2L 4601703 4601734 chr2L 4609144 4609175 mdg1 9 7441 1.5 4.0 2.8 2.4 7472 chr2L 4601703 intron dp - chr2L 4605439 intron dp - chr2L 4609175 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-105 71 chr2L 4669568 4669593 chr2L 4669703 4669717 8 133 2.5 3.5 3.0 2.0 149 chr2L 4669568 intergenic not near genes chr2L 4669642 intergenic not near genes chr2L 4669717 intergenic not near genes chr2L_8_4665001 chr2L_4665001 RAL-105 72 chr2L 4752396 4752405 chr2L 4752480 4752489 7 85 7.0 0.0 3.5 1.6 93 chr2L 4752396 intron CG15630 - chr2L 4752442 intron CG15630 - chr2L 4752489 intron CG15630 - chr2L_7_4750001 chr2L_4750001 RAL-105 73 chr2L 4792724 4792755 chr2L 4792832 4792857 13 106 4.0 2.5 3.2 3.1 133 chr2L 4792724 intron CG15630 - chr2L 4792790 intron CG15630 - chr2L 4792857 intron CG15630 - chr2L_13_4790001 chr2L_4790001 RAL-105 74 chr2L 4862969 4863003 chr2L 4863331 4863365 10 359 1.5 3.0 2.2 3.1 396 chr2L 4862969 intron pog + chr2L 4863167 intron pog + chr2L 4863365 intron pog + chr2L_10_4860001 chr2L_4860001 RAL-105 75 chr2L 5005939 5005966 chr2L 5006019 5006046 5 80 1.0 0.0 0.5 3.3 107 chr2L 5005939 intron Rtnl1 - chr2L 5005992 intron Rtnl1 - chr2L 5006046 intron Rtnl1 - chr2L_5_5005001 chr2L_5005001 RAL-105 76 chr2L 5147724 5147757 chr2L 5147956 5147989 5 232 1.5 1.5 1.5 2.0 265 chr2L 5147724 intron Msp300 + chr2L 5147856 intron Msp300 + chr2L 5147989 intron Msp300 + chr2L_5_5145001 chr2L_5145001 RAL-105 77 chr2L 5224230 5224257 chr2L 5224359 5224386 7 129 3.5 0.0 1.8 2.5 156 chr2L 5224230 intron tkv - chr2L 5224308 intron tkv - chr2L 5224386 intron tkv - chr2L_7_5220001 chr2L_5220001 RAL-105 78 chr2L 5433849 5433860 chr2L 5433929 5433940 5 80 3.0 2.5 2.8 1.3 91 chr2L 5433849 3` UTR CR43715 - chr2L 5433894 3` UTR CR43715 - chr2L 5433940 3` UTR CR43715 - chr2L_5_5430001 chr2L_5430001 RAL-105 79 chr2L 5573682 5573711 chr2L 5573758 5573787 4 76 0.5 0.5 0.5 2.7 105 chr2L 5573682 intergenic not near genes chr2L 5573734 intergenic not near genes chr2L 5573787 intergenic not near genes chr2L_4_5570001 chr2L_5570001 RAL-105 80 chr2L 5805844 5805863 chr2L 5806215 5806234 4 371 4.0 3.5 3.8 0.8 390 chr2L 5805844 intron CG11034 + chr2L 5806039 intron CG11034 + chr2L 5806234 intron CG11034 + chr2L_4_5805001 chr2L_5805001 RAL-105 81 chr2L 5827716 5827733 chr2L 5836724 5836740 roo 4 9008 4.5 2.0 3.2 1.0 9024 chr2L 5827716 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836740 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-105 82 chr2L 5863396 5863421 chr2L 5863681 5863706 6 285 4.5 4.0 4.2 1.2 310 chr2L 5863396 intron rau - chr2L 5863551 intron rau - chr2L 5863706 intron rau - chr2L_6_5860001 chr2L_5860001 RAL-105 83 chr2L 5897596 5897626 chr2L 5897679 5897686 15 80 4.0 6.0 5.0 2.5 90 chr2L 5897596 intergenic not near genes chr2L 5897641 intergenic not near genes chr2L 5897686 intergenic not near genes chr2L_15_5895001 chr2L_5895001 RAL-105 84 chr2L 5906450 5906471 chr2L 5906533 5906554 6 83 2.0 0.5 1.2 2.7 104 chr2L 5906450 intergenic CR43808 - chr2L 5906502 intergenic CR43808 - chr2L 5906554 intergenic CR43808 - chr2L_6_5905001 chr2L_5905001 RAL-105 85 chr2L 6021624 6021639 chr2L 6021701 6021717 8 78 3.5 0.0 1.8 2.9 93 chr2L 6021624 exon CG13996 + chr2L 6021670 exon CG13996 + chr2L 6021717 3` UTR CG13996 + chr2L_8_6020001 chr2L_6020001 RAL-105 86 chr2L 6026936 6026942 chr2L 6027020 6027026 4 84 1.0 6.0 3.5 0.9 90 chr2L 6026936 intron CG9109 - chr2L 6026981 intron CG9109 - chr2L 6027026 intron CG9109 - chr2L_4_6025001 chr2L_6025001 RAL-105 87 chr2L 6136577 6136582 chr2L 6136674 6136679 4 97 0.0 4.0 2.0 1.3 102 chr2L 6136577 intergenic not near genes chr2L 6136628 intergenic not near genes chr2L 6136679 intergenic not near genes chr2L_4_6135001 chr2L_6135001 RAL-105 88 chr2L 6249812 6249820 chr2L 6249914 6249922 5 101 2.5 0.0 1.2 2.3 110 chr2L 6249812 intergenic not near genes chr2L 6249867 intergenic not near genes chr2L 6249922 intergenic not near genes chr2L_5_6245001 chr2L_6245001 RAL-105 89 chr2L 6286389 6286413 chr2L 6286483 6286507 4 94 1.5 1.0 1.2 1.8 118 chr2L 6286389 intron Ddr + chr2L 6286448 intron Ddr + chr2L 6286507 intron Ddr + chr2L_4_6285001 chr2L_6285001 RAL-105 90 chr2L 6363148 6363182 chr2L 6366070 6366073 Burdock 7 2913 2.0 4.0 3.0 1.8 2925 chr2L 6363148 intergenic not near genes chr2L 6364610 intergenic not near genes chr2L 6366073 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-105 91 chr2L 6378535 6378556 chr2L 6378627 6378650 7 94 0.0 5.5 2.8 1.8 115 chr2L 6378535 3` UTR CG42368 - chr2L 6378592 3` UTR CG42368 - chr2L 6378650 3` UTR CG42368 - chr2L_7_6375001 chr2L_6375001 RAL-105 92 chr2L 6426857 6426884 chr2L 6445117 6445144 roo 11 18260 1.5 3.5 2.5 3.1 18287 chr2L 6426857 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445144 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-105 93 chr2L 6544379 6544395 chr2L 6544470 6544487 4 92 3.0 4.0 3.5 0.9 108 chr2L 6544379 intron eya - chr2L 6544433 intron eya - chr2L 6544487 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-105 94 chr2L 6553272 6553298 chr2L 6553367 6553393 5 97 2.0 5.0 3.5 1.1 121 chr2L 6553272 intergenic not near genes chr2L 6553332 intergenic not near genes chr2L 6553393 intergenic not near genes chr2L_5_6550001 chr2L_6550001 RAL-105 95 chr2L 6626887 6626904 chr2L 6626972 6626989 7 85 2.5 1.0 1.8 2.5 102 chr2L 6626887 intron Oatp26F - chr2L 6626938 intron Oatp26F - chr2L 6626989 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-105 96 chr2L 6640905 6640940 chr2L 6641000 6641035 12 94 1.0 1.5 1.2 5.5 130 chr2L 6640905 exon CG31635 - chr2L 6640970 intron CG31635 - chr2L 6641035 intron CG31635 - chr2L_12_6640001 chr2L_6640001 RAL-105 97 chr2L 6740743 6740754 chr2L 6740830 6740841 4 87 0.0 7.5 3.8 0.8 98 chr2L 6740743 intergenic not near genes chr2L 6740792 intergenic not near genes chr2L 6740841 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-105 98 chr2L 6850382 6850408 chr2L 6850465 6850491 4 83 1.5 0.5 1.0 2.0 109 chr2L 6850382 intergenic not near genes chr2L 6850436 intergenic not near genes chr2L 6850491 intergenic not near genes chr2L_4_6850001 chr2L_6850001 RAL-105 99 chr2L 6876790 6876810 chr2L 6882968 6883001 diver 7 6183 3.0 3.5 3.2 1.7 6211 chr2L 6876790 intron Nlg2 + chr2L 6879896 intron Nlg2 + chr2L 6883001 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-105 100 chr2L 7100982 7101003 chr2L 7101208 7101229 6 225 2.5 4.0 3.2 1.4 247 chr2L 7100982 intron Pvf3 - chr2L 7101106 intron Pvf3 - chr2L 7101229 intron Pvf3 - chr2L_6_7100001 chr2L_7100001 RAL-105 101 chr2L 7123850 7123861 chr2L 7123926 7123937 4 76 2.0 5.0 3.5 0.9 87 chr2L 7123850 intron Pvf3 - chr2L 7123894 intron Pvf3 - chr2L 7123937 intron Pvf3 - chr2L_4_7120001 chr2L_7120001 RAL-105 102 chr2L 7343325 7343359 chr2L 7350441 7350474 roo 6 7114 3.5 3.0 3.2 1.4 7149 chr2L 7343325 intron Wnt6 + chr2L 7346900 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_6_7345001 chr2L_7345001 RAL-105 103 chr2L 7404872 7404892 chr2L 7404951 7404970 4 79 0.5 1.0 0.8 2.2 98 chr2L 7404872 intergenic CG5171 +,CG5177 + chr2L 7404921 intergenic CG5177 +,CG5171 + chr2L 7404970 intergenic CG5177 +,CG5171 + chr2L_4_7400001 chr2L_7400001 RAL-105 104 chr2L 7487297 7487330 chr2L 7487373 7487406 9 74 2.0 1.0 1.5 3.6 109 chr2L 7487297 intron Ziz - chr2L 7487352 intron Ziz - chr2L 7487406 intron Ziz - chr2L_9_7485001 chr2L_7485001 RAL-105 105 chr2L 7502740 7502767 chr2L 7502815 7502838 8 74 2.5 1.0 1.8 2.9 98 chr2L 7502740 intron RapGAP1 - chr2L 7502789 intron RapGAP1 - chr2L 7502838 intron RapGAP1 - chr2L_8_7500001 chr2L_7500001 RAL-105 106 chr2L 7579892 7579916 chr2L 7579974 7579998 7 82 1.5 1.5 1.5 2.8 106 chr2L 7579892 intergenic not near genes chr2L 7579945 intergenic not near genes chr2L 7579998 intergenic not near genes chr2L_7_7575001 chr2L_7575001 RAL-105 107 chr2L 7608754 7608769 chr2L 7608947 7608962 4 193 2.5 2.0 2.2 1.2 208 chr2L 7608754 intron CG6739 + chr2L 7608858 intron CG6739 + chr2L 7608962 intron CG6739 + chr2L_4_7605001 chr2L_7605001 RAL-105 108 chr2L 7766628 7766640 chr2L 7766704 7766716 6 76 6.5 0.0 3.2 1.4 88 chr2L 7766628 intergenic not near genes chr2L 7766672 intergenic not near genes chr2L 7766716 intergenic not near genes chr2L_6_7765001 chr2L_7765001 RAL-105 109 chr2L 7959044 7959065 chr2L 7960455 7960476 pogo 4 1411 3.0 0.0 1.5 1.6 1432 chr2L 7959044 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960476 intron Snoo - chr2L_4_7955001 chr2L_7955001 RAL-105 110 chr2L 7977090 7977112 chr2L 7984066 7984088 297 4 6976 1.0 3.5 2.2 1.2 6998 chr2L 7977090 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-105 111 chr2L 8044095 8044129 chr2L 8044174 8044208 5 79 1.0 2.0 1.5 2.0 113 chr2L 8044095 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-105 112 chr2L 8143197 8143206 chr2L 8143340 8143357 4 149 1.0 0.5 0.8 2.2 160 chr2L 8143197 intron CG8552 - chr2L 8143277 intron CG8552 - chr2L 8143357 intron CG8552 - chr2L_4_8140001 chr2L_8140001 RAL-105 113 chr2L 8167143 8167181 chr2L 8167234 8167272 7 90 2.0 1.5 1.8 2.5 129 chr2L 8167143 intron Piezo + chr2L 8167208 intron Piezo + chr2L 8167272 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-105 114 chr2L 8184924 8184953 chr2L 8185015 8185044 9 91 1.5 3.0 2.2 2.8 120 chr2L 8184924 intron Piezo + chr2L 8184984 intron Piezo + chr2L 8185044 intron Piezo + chr2L_9_8180001 chr2L_8180001 RAL-105 115 chr2L 8286294 8286329 chr2L 8286381 8286416 6 87 0.5 3.5 2.0 2.0 122 chr2L 8286294 intron Btk29A - chr2L 8286355 intron Btk29A - chr2L 8286416 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-105 116 chr2L 8604975 8604996 chr2L 8605073 8605092 5 97 2.5 3.5 3.0 1.2 117 chr2L 8604975 intron Sema-1a + chr2L 8605034 intron Sema-1a + chr2L 8605092 intron Sema-1a + chr2L_5_8605001 chr2L_8605001 RAL-105 117 chr2L 8612823 8612841 chr2L 8613048 8613066 7 223 4.5 6.0 5.2 1.1 243 chr2L 8612823 intron Sema-1a + chr2L 8612944 intron Sema-1a + chr2L 8613066 intron Sema-1a + chr2L_7_8610001 chr2L_8610001 RAL-105 118 chr2L 8723113 8723141 chr2L 8731490 8731518 Tirant 6 8377 1.0 2.5 1.8 2.1 8405 chr2L 8723113 intron raw - chr2L 8727316 intron raw - chr2L 8731518 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-105 119 chr2L 8799802 8799831 chr2L 8799918 8799940 5 109 0.5 1.0 0.8 2.8 138 chr2L 8799802 intergenic not near genes chr2L 8799871 intergenic not near genes chr2L 8799940 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-105 120 chr2L 8815745 8815774 chr2L 8815825 8815855 8 80 2.5 3.5 3.0 2.0 110 chr2L 8815745 intergenic not near genes chr2L 8815800 intergenic not near genes chr2L 8815855 intergenic not near genes chr2L_8_8815001 chr2L_8815001 RAL-105 121 chr2L 9000277 9000312 chr2L 9007787 9007822 roo 11 7510 2.0 2.5 2.2 3.4 7545 chr2L 9000277 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007822 intergenic not near genes chr2L_11_9000001 chr2L_9000001 RAL-105 122 chr2L 9084338 9084340 chr2L 16217659 16217660 14 7133321 13.5 11.5 12.5 1.0 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-105 123 chr2L 9114370 9114400 chr2L 9114509 9114540 8 140 1.5 4.0 2.8 2.1 170 chr2L 9114370 intergenic not near genes chr2L 9114455 intergenic not near genes chr2L 9114540 intergenic not near genes chr2L_8_9110001 chr2L_9110001 RAL-105 124 chr2L 9217971 9218000 chr2L 9222758 9222787 Doc 8 4786 2.0 4.0 3.0 2.0 4816 chr2L 9217971 intron tai + chr2L 9220379 intron tai + chr2L 9222787 intron tai + chr2L_8_9220001 chr2L_9220001 RAL-105 125 chr2L 9303468 9303494 chr2L 9303545 9303571 6 77 0.0 3.0 1.5 2.4 103 chr2L 9303468 intergenic not near genes chr2L 9303520 intergenic not near genes chr2L 9303571 intergenic not near genes chr2L_6_9300001 chr2L_9300001 RAL-105 126 chr2L 9393508 9393523 chr2L 9396475 9396490 jockey 9 2966 3.5 2.5 3.0 2.2 2982 chr2L 9393508 intron Shawl - chr2L 9394999 intron Shawl - chr2L 9396490 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-105 127 chr2L 9457068 9457104 chr2L 9457145 9457145 7 72 3.0 7.5 5.2 1.1 77 chr2L 9457068 intron numb + chr2L 9457106 intron numb + chr2L 9457145 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-105 128 chr2L 9530774 9530794 chr2L 9530857 9530877 6 83 2.5 2.0 2.2 1.9 103 chr2L 9530774 intron Oatp30B + chr2L 9530826 intron Oatp30B + chr2L 9530877 intron Oatp30B + chr2L_6_9530001 chr2L_9530001 RAL-105 129 chr2L 9618897 9618912 chr2L 9618974 9618989 4 77 2.5 1.5 2.0 1.3 92 chr2L 9618897 intron GlcAT-S + chr2L 9618943 intron GlcAT-S + chr2L 9618989 intron GlcAT-S + chr2L_4_9615001 chr2L_9615001 RAL-105 130 chr2L 9658515 9658539 chr2L 9658907 9658931 6 392 1.5 2.0 1.8 2.1 416 chr2L 9658515 intergenic not near genes chr2L 9658723 intergenic not near genes chr2L 9658931 intergenic not near genes chr2L_6_9655001 chr2L_9655001 RAL-105 131 chr2L 9837432 9837446 chr2L 9837510 9837524 5 78 1.0 0.0 0.5 3.3 92 chr2L 9837432 intron nAChRalpha6 - chr2L 9837478 intron nAChRalpha6 - chr2L 9837524 intron nAChRalpha6 - chr2L_5_9835001 chr2L_9835001 RAL-105 132 chr2L 9865806 9865819 chr2L 9865942 9865955 4 136 1.5 4.5 3.0 1.0 149 chr2L 9865806 intron nAChRalpha6 - chr2L 9865880 intron nAChRalpha6 - chr2L 9865955 intron nAChRalpha6 - chr2L_4_9865001 chr2L_9865001 RAL-105 133 chr2L 9881008 9881039 chr2L 9881085 9881117 4 78 3.5 3.0 3.2 1.0 109 chr2L 9881008 intron nAChRalpha6 - chr2L 9881062 intron nAChRalpha6 - chr2L 9881117 intron nAChRalpha6 - chr2L_4_9880001 chr2L_9880001 RAL-105 134 chr2L 9973733 9973737 chr2L 9980852 9980855 HMS-Beagle 4 7119 7.0 6.5 6.8 0.5 7122 chr2L 9973733 intergenic not near genes chr2L 9977294 intergenic not near genes chr2L 9980855 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-105 135 chr2L 9973750 9973757 chr2L 9980843 9980876 HMS-Beagle 4 7112 5.0 3.5 4.2 0.8 7126 chr2L 9973750 intergenic not near genes chr2L 9977313 intergenic not near genes chr2L 9980876 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-105 136 chr2L 9986368 9986379 chr2L 9986445 9986448 4 82 4.0 1.0 2.5 1.1 80 chr2L 9986368 intron bib + chr2L 9986408 intron bib + chr2L 9986448 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-105 137 chr2L 10046472 10046476 chr2L 10046578 10046583 7 107 3.0 2.5 2.8 1.8 111 chr2L 10046472 intergenic not near genes chr2L 10046528 intergenic not near genes chr2L 10046583 intergenic not near genes chr2L_7_10045001 chr2L_10045001 RAL-105 138 chr2L 10051737 10051753 chr2L 10051818 10051831 7 79 2.5 7.0 4.8 1.2 94 chr2L 10051737 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051831 5` UTR CR44874 + chr2L_7_10050001 chr2L_10050001 RAL-105 139 chr2L 10153202 10153235 chr2L 10153280 10153313 8 79 2.0 2.5 2.2 2.5 111 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153313 intron,intron CG44153 -,CG4839 + chr2L_8_10150001 chr2L_10150001 RAL-105 140 chr2L 10156324 10156345 chr2L 10163794 10163815 blood 6 7470 2.0 3.0 2.5 1.7 7491 chr2L 10156324 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163815 intron CG44153 - chr2L_6_10160001 chr2L_10160001 RAL-105 141 chr2L 10479389 10479418 chr2L 10479471 10479500 8 82 0.0 3.0 1.5 3.2 111 chr2L 10479389 intron RluA-2 + chr2L 10479444 intron RluA-2 + chr2L 10479500 intron RluA-2 + chr2L_8_10475001 chr2L_10475001 RAL-105 142 chr2L 10499553 10499579 chr2L 10499652 10499677 8 96 2.5 6.0 4.2 1.5 124 chr2L 10499553 intron Myo31DF - chr2L 10499615 intron Myo31DF - chr2L 10499677 intron Myo31DF - chr2L_8_10495001 chr2L_10495001 RAL-105 143 chr2L 10580790 10580824 chr2L 10580871 10580904 4 81 0.0 4.0 2.0 1.3 114 chr2L 10580790 intron Trim9 + chr2L 10580847 intron Trim9 + chr2L 10580904 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-105 144 chr2L 10633356 10633382 chr2L 10633442 10633469 5 85 4.5 4.5 4.5 0.9 113 chr2L 10633356 intron CG7329 - chr2L 10633412 intron CG7329 - chr2L 10633469 intron CG7329 - chr2L_5_10630001 chr2L_10630001 RAL-105 145 chr2L 10757168 10757198 chr2L 10757316 10757346 6 148 3.0 2.5 2.8 1.6 178 chr2L 10757168 intergenic not near genes chr2L 10757257 intergenic not near genes chr2L 10757346 intergenic not near genes chr2L_6_10755001 chr2L_10755001 RAL-105 146 chr2L 10785069 10785091 chr2L 10785143 10785166 6 76 7.0 3.5 5.2 1.0 97 chr2L 10785069 intron CG31869 - chr2L 10785118 intron CG31869 - chr2L 10785166 intron CG31869 - chr2L_6_10785001 chr2L_10785001 RAL-105 147 chr2L 10862855 10862876 chr2L 10864450 10864490 Rt1c 10 1608 5.0 4.5 4.8 1.7 1635 chr2L 10862855 3` UTR CR43807 - chr2L 10863672 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-105 148 chr2L 10946949 10946969 chr2L 10956164 10956183 roo 13 9214 5.0 8.0 6.5 1.7 9234 chr2L 10946949 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956183 intron dpr2 - chr2L_13_10950001 chr2L_10950001 RAL-105 149 chr2L 11213400 11213426 chr2L 11213492 11213518 6 92 2.5 0.5 1.5 2.4 118 chr2L 11213400 intron ab + chr2L 11213459 intron ab + chr2L 11213518 intron ab + chr2L_6_11210001 chr2L_11210001 RAL-105 150 chr2L 11224069 11224089 chr2L 11224180 11224200 4 111 1.5 2.5 2.0 1.3 131 chr2L 11224069 intron ab + chr2L 11224134 intron ab + chr2L 11224200 intron ab + chr2L_4_11220001 chr2L_11220001 RAL-105 151 chr2L 11303057 11303084 chr2L 11303137 11303165 9 81 1.0 1.5 1.2 4.1 108 chr2L 11303057 intergenic not near genes chr2L 11303111 intergenic not near genes chr2L 11303165 intergenic not near genes chr2L_9_11300001 chr2L_11300001 RAL-105 152 chr2L 11418667 11418688 chr2L 11418746 11418767 7 79 0.5 4.5 2.5 2.0 100 chr2L 11418667 intergenic not near genes chr2L 11418717 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-105 153 chr2L 11491128 11491158 chr2L 11491209 11491238 10 79 1.0 1.5 1.2 4.5 110 chr2L 11491128 intergenic not near genes chr2L 11491183 intergenic not near genes chr2L 11491238 intergenic not near genes chr2L_10_11490001 chr2L_11490001 RAL-105 154 chr2L 11563651 11563669 chr2L 11568854 11568873 copia 4 5204 3.0 1.5 2.2 1.2 5222 chr2L 11563651 intergenic not near genes chr2L 11566262 intergenic not near genes chr2L 11568873 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-105 155 chr2L 11609547 11609576 chr2L 11609622 11609652 6 76 1.0 1.5 1.2 2.7 105 chr2L 11609547 intron kek2 + chr2L 11609600 intron kek2 + chr2L 11609652 intron kek2 + chr2L_6_11605001 chr2L_11605001 RAL-105 156 chr2L 11614051 11614086 chr2L 11615546 11615576 hopper2 8 1486 2.0 1.5 1.8 2.9 1525 chr2L 11614051 intron kek2 + chr2L 11614814 intron kek2 + chr2L 11615576 intron kek2 + chr2L_8_11610001 chr2L_11610001 RAL-105 157 chr2L 11635517 11635537 chr2L 11635584 11635593 10 70 1.5 2.5 2.0 3.3 76 chr2L 11635517 intergenic not near genes chr2L 11635555 intergenic not near genes chr2L 11635593 intergenic not near genes chr2L_10_11635001 chr2L_11635001 RAL-105 158 chr2L 11713508 11713536 chr2L 11720976 11721004 blood 6 7468 3.5 1.5 2.5 1.7 7496 chr2L 11713508 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721004 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-105 159 chr2L 11770598 11770617 chr2L 11770685 11770703 8 86 7.0 3.5 5.2 1.3 105 chr2L 11770598 intergenic not near genes chr2L 11770650 intergenic not near genes chr2L 11770703 intergenic not near genes chr2L_8_11770001 chr2L_11770001 RAL-105 160 chr2L 11841370 11841390 chr2L 11841448 11841468 4 78 1.0 0.0 0.5 2.7 98 chr2L 11841370 intron Pde1c - chr2L 11841419 intron Pde1c - chr2L 11841468 intron Pde1c - chr2L_4_11840001 chr2L_11840001 RAL-105 161 chr2L 11953742 11953750 chr2L 11953822 11953829 4 80 0.0 3.5 1.8 1.4 87 chr2L 11953742 3` UTR CR43314 - chr2L 11953786 3` UTR CR43314 - chr2L 11953829 3` UTR CR43314 - chr2L_4_11950001 chr2L_11950001 RAL-105 162 chr2L 12180841 12180869 chr2L 12180942 12180953 7 98 1.5 5.5 3.5 1.6 112 chr2L 12180841 intron aret + chr2L 12180897 intron aret + chr2L 12180953 intron aret + chr2L_7_12180001 chr2L_12180001 RAL-105 163 chr2L 12283563 12283589 chr2L 12283642 12283668 7 79 0.5 0.0 0.2 5.8 105 chr2L 12283563 intron aret + chr2L 12283616 intron aret + chr2L 12283668 intron aret + chr2L_7_12280001 chr2L_12280001 RAL-105 164 chr2L 12305413 12305437 chr2L 12305501 12305525 11 88 2.0 5.0 3.5 2.4 112 chr2L 12305413 intron aret + chr2L 12305469 intron aret + chr2L 12305525 intron aret + chr2L_11_12305001 chr2L_12305001 RAL-105 165 chr2L 12487889 12487906 chr2L 12487968 12487987 4 80 6.5 3.0 4.8 0.7 98 chr2L 12487889 intron bun - chr2L 12487938 intron bun - chr2L 12487987 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-105 166 chr2L 12529415 12529445 chr2L 12529491 12529521 9 76 1.5 2.5 2.0 3.0 106 chr2L 12529415 intron bun - chr2L 12529468 intron bun - chr2L 12529521 intron bun - chr2L_9_12525001 chr2L_12525001 RAL-105 167 chr2L 12696771 12696808 chr2L 12706000 12706037 13 9231 34.0 40.0 37.0 0.3 9266 chr2L 12696771 intron,exon PICK1 +,CG5781 - chr2L 12701404 3` UTR CG5776 - chr2L 12706037 exon spict + chr2L_13_12700001 chr2L_12700001 RAL-105 168 chr2L 12728929 12728947 chr2L 12729162 12729187 pogo 7 238 2.0 1.5 1.8 2.5 258 chr2L 12728929 intron MRP + chr2L 12729058 intron MRP + chr2L 12729187 exon MRP + chr2L_7_12725001 chr2L_12725001 RAL-105 169 chr2L 12731056 12731091 chr2L 12735823 12735858 F-element 8 4767 1.5 1.0 1.2 3.6 4802 chr2L 12731056 intron MRP + chr2L 12733457 intron MRP + chr2L 12735858 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-105 170 chr2L 12739173 12739203 chr2L 12743954 12743984 Doc 5 4781 3.0 3.0 3.0 1.2 4811 chr2L 12739173 exon MRP + chr2L 12741578 intron MRP + chr2L 12743984 exon MRP + chr2L_5_12740001 chr2L_12740001 RAL-105 171 chr2L 12861694 12861731 chr2L 12863161 12863179 hobo 9 1463 3.0 1.5 2.2 2.8 1485 chr2L 12861694 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-105 172 chr2L 12933852 12933880 chr2L 12941319 12941343 blood 11 7465 3.5 4.5 4.0 2.2 7491 chr2L 12933852 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941343 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-105 173 chr2L 13035464 13035491 chr2L 13035674 13035683 9 208 2.5 5.0 3.8 1.9 219 chr2L 13035464 intron CG9932 - chr2L 13035574 intron CG9932 - chr2L 13035683 intron CG9932 - chr2L_9_13035001 chr2L_13035001 RAL-105 174 chr2L 13036246 13036270 chr2L 13036486 13036512 X-element 6 242 0.5 0.0 0.2 5.0 266 chr2L 13036246 intron CG9932 - chr2L 13036379 intron CG9932 - chr2L 13036512 intron CG9932 - chr2L_6_13035001 chr2L_13035001 RAL-105 175 chr2L 13204317 13204347 chr2L 13204416 13204429 7 95 1.5 5.0 3.2 1.7 112 chr2L 13204317 intron Pect + chr2L 13204373 intron Pect + chr2L 13204429 intron Pect + chr2L_7_13200001 chr2L_13200001 RAL-105 176 chr2L 13369697 13369721 chr2L 13369783 13369812 9 86 2.5 3.0 2.8 2.4 115 chr2L 13369697 exon CG31855 + chr2L 13369754 3` UTR CG31855 + chr2L 13369812 3` UTR CG31855 + chr2L_9_13365001 chr2L_13365001 RAL-105 177 chr2L 13405648 13405679 chr2L 13410444 13410476 Doc 4 4796 2.5 2.0 2.2 1.2 4828 chr2L 13405648 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_4_13405001 chr2L_13405001 RAL-105 178 chr2L 13425039 13425072 chr2L 13425127 13425159 9 88 2.5 2.5 2.5 2.6 120 chr2L 13425039 intron CG42784 + chr2L 13425099 intron CG42784 + chr2L 13425159 intron CG42784 + chr2L_9_13425001 chr2L_13425001 RAL-105 179 chr2L 13481454 13481462 chr2L 13482061 13482069 jockey 4 607 3.5 2.5 3.0 1.0 615 chr2L 13481454 intron CG42784 + chr2L 13481762 intron CG42784 + chr2L 13482069 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-105 180 chr2L 13622138 13622166 chr2L 13622237 13622243 8 91 2.0 1.0 1.5 3.2 105 chr2L 13622138 intron kuz + chr2L 13622190 intron kuz + chr2L 13622243 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-105 181 chr2L 13693011 13693031 chr2L 13693087 13693107 9 75 3.0 2.0 2.5 2.6 96 chr2L 13693011 intron CG31814 - chr2L 13693059 intron CG31814 - chr2L 13693107 intron CG31814 - chr2L_9_13690001 chr2L_13690001 RAL-105 182 chr2L 13705576 13705608 chr2L 13705675 13705708 13 99 4.5 1.0 2.8 3.4 132 chr2L 13705576 intron CG31814 - chr2L 13705642 intron CG31814 - chr2L 13705708 intron CG31814 - chr2L_13_13705001 chr2L_13705001 RAL-105 183 chr2L 13853096 13853118 chr2L 13862247 13862269 roo 5 9151 2.5 2.0 2.2 1.6 9173 chr2L 13853096 intron CenG1A + chr2L 13857682 intron CenG1A + chr2L 13862269 intron CenG1A + chr2L_5_13855001 chr2L_13855001 RAL-105 184 chr2L 14005181 14005206 chr2L 14005259 14005259 4 67 3.5 2.0 2.8 1.1 78 chr2L 14005181 intergenic not near genes chr2L 14005220 intergenic not near genes chr2L 14005259 intergenic not near genes chr2L_4_14005001 chr2L_14005001 RAL-105 185 chr2L 14118662 14118690 chr2L 14118761 14118789 7 98 3.5 1.5 2.5 2.0 127 chr2L 14118662 intergenic not near genes chr2L 14118726 intergenic not near genes chr2L 14118789 intergenic not near genes chr2L_7_14115001 chr2L_14115001 RAL-105 186 chr2L 14246284 14246312 chr2L 14246362 14246390 4 78 0.0 0.0 0.0 4.0 106 chr2L 14246284 intergenic not near genes chr2L 14246337 intergenic not near genes chr2L 14246390 intergenic not near genes chr2L_4_14245001 chr2L_14245001 RAL-105 187 chr2L 14378656 14378677 chr2L 14378734 14378756 5 79 1.5 0.0 0.8 2.8 100 chr2L 14378656 3` UTR ppk - chr2L 14378706 3` UTR ppk - chr2L 14378756 3` UTR ppk - chr2L_5_14375001 chr2L_14375001 RAL-105 188 chr2L 14554168 14554175 chr2L 14554245 14554252 4 77 2.5 3.5 3.0 1.0 84 chr2L 14554168 intergenic not near genes chr2L 14554210 intergenic not near genes chr2L 14554252 intergenic not near genes chr2L_4_14550001 chr2L_14550001 RAL-105 189 chr2L 14554176 14554198 chr2L 14554242 14554275 8 72 2.0 3.5 2.8 2.1 99 chr2L 14554176 intergenic not near genes chr2L 14554226 intergenic not near genes chr2L 14554275 intergenic not near genes chr2L_8_14550001 chr2L_14550001 RAL-105 190 chr2L 14580611 14580641 chr2L 14580769 14580799 11 155 2.0 0.5 1.2 5.0 188 chr2L 14580611 intergenic not near genes chr2L 14580705 intergenic not near genes chr2L 14580799 intergenic not near genes chr2L_11_14580001 chr2L_14580001 RAL-105 191 chr2L 14588387 14588413 chr2L 14588541 14588567 5 154 0.5 2.5 1.5 2.0 180 chr2L 14588387 intergenic CG42680 - chr2L 14588477 intergenic CG42680 - chr2L 14588567 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-105 192 chr2L 14592320 14592340 chr2L 14592640 14592660 8 320 2.0 2.0 2.0 2.7 340 chr2L 14592320 intergenic not near genes chr2L 14592490 intergenic not near genes chr2L 14592660 intergenic not near genes chr2L_8_14590001 chr2L_14590001 RAL-105 193 chr2L 14601976 14602002 chr2L 14602060 14602085 7 83 4.5 2.5 3.5 1.6 109 chr2L 14601976 exon osp - chr2L 14602030 intron osp - chr2L 14602085 intron osp - chr2L_7_14600001 chr2L_14600001 RAL-105 194 chr2L 14658688 14658715 chr2L 14658769 14658796 4 81 0.0 0.0 0.0 4.0 108 chr2L 14658688 intron osp - chr2L 14658742 intron osp - chr2L 14658796 intron osp - chr2L_4_14655001 chr2L_14655001 RAL-105 195 chr2L 14678355 14678387 chr2L 14678463 14678495 12 106 1.5 4.5 3.0 3.0 140 chr2L 14678355 intron osp - chr2L 14678425 intron osp - chr2L 14678495 intron osp - chr2L_12_14675001 chr2L_14675001 RAL-105 196 chr2L 14694287 14694313 chr2L 14694367 14694393 4 76 0.5 2.0 1.2 1.8 106 chr2L 14694287 intergenic not near genes chr2L 14694340 intergenic not near genes chr2L 14694393 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-105 197 chr2L 14694670 14694692 chr2L 14694751 14694772 4 80 2.5 2.0 2.2 1.2 102 chr2L 14694670 intergenic not near genes chr2L 14694721 intergenic not near genes chr2L 14694772 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-105 198 chr2L 14803879 14803912 chr2L 14809082 14809115 copia 9 5202 2.5 2.0 2.2 2.8 5236 chr2L 14803879 intergenic not near genes chr2L 14806497 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-105 199 chr2L 14833797 14833820 chr2L 14833901 14833923 4 103 0.0 0.0 0.0 4.0 126 chr2L 14833797 intergenic not near genes chr2L 14833860 intergenic not near genes chr2L 14833923 intergenic not near genes chr2L_4_14830001 chr2L_14830001 RAL-105 200 chr2L 14933668 14933686 chr2L 14933742 14933762 6 75 3.5 1.0 2.2 1.9 94 chr2L 14933668 intron CG42313 - chr2L 14933715 intron CG42313 - chr2L 14933762 intron CG42313 - chr2L_6_14930001 chr2L_14930001 RAL-105 201 chr2L 14945440 14945457 chr2L 14945533 14945553 6 96 0.0 0.5 0.2 5.0 113 chr2L 14945440 intron CG42313 - chr2L 14945496 intron CG42313 - chr2L 14945553 intron CG42313 - chr2L_6_14945001 chr2L_14945001 RAL-105 202 chr2L 15226377 15226392 chr2L 15226452 15226467 4 75 1.5 3.0 2.2 1.2 90 chr2L 15226377 intergenic not near genes chr2L 15226422 intergenic not near genes chr2L 15226467 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-105 203 chr2L 15586421 15586439 chr2L 15593472 15593491 297 4 7052 0.5 1.5 1.0 2.0 7070 chr2L 15586421 intergenic not near genes chr2L 15589956 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_4_15585001 chr2L_15585001 RAL-105 204 chr2L 15912426 15912434 chr2L 15912729 15912736 4 302 4.0 3.5 3.8 0.8 310 chr2L 15912426 intron beat-Ib - chr2L 15912581 intron,5` UTR beat-Ib -,CR44868 + chr2L 15912736 intron,5` UTR beat-Ib -,CR44868 + chr2L_4_15910001 chr2L_15910001 RAL-105 205 chr2L 10522357 10522357 chr2L 16071771 16071771 4 5549414 6.5 12.0 9.2 0.4 5549414 chr2L 10522357 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_4_13295001 chr2L_13295001 RAL-105 206 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 14 145889 14.0 11.0 12.5 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_16140001 chr2L_16140001 RAL-105 207 chr2L 9084336 9084340 chr2L 16217660 16217660 19 7133321 13.5 11.0 12.2 1.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_19_12650001 chr2L_12650001 RAL-105 208 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 14.0 11.0 12.5 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-105 209 chr2L 16263988 16264019 chr2L 16264079 16264110 12 90 3.5 2.0 2.8 3.2 122 chr2L 16263988 3` UTR crp - chr2L 16264049 3` UTR crp - chr2L 16264110 3` UTR crp - chr2L_12_16260001 chr2L_16260001 RAL-105 210 chr2L 16280273 16280282 chr2L 16281423 16281453 1360 5 1166 4.0 3.5 3.8 1.0 1180 chr2L 16280273 intron crp - chr2L 16280863 intron crp - chr2L 16281453 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-105 211 chr2L 16337868 16337889 chr2L 16337947 16337968 5 79 2.0 1.0 1.5 2.0 100 chr2L 16337868 5` UTR CG31817 - chr2L 16337918 intergenic CG31817 -,CG42266 - chr2L 16337968 intergenic CG42266 -,CG31817 - chr2L_5_16335001 chr2L_16335001 RAL-105 212 chr2L 16521358 16521365 chr2L 16522470 16522476 4 1112 4.0 4.0 4.0 0.8 1118 chr2L 16521358 intron CG5953 - chr2L 16521917 intron CG5953 - chr2L 16522476 intron CG5953 - chr2L_4_16520001 chr2L_16520001 RAL-105 213 chr2L 16818788 16818796 chr2L 16818882 16818890 4 94 2.0 2.5 2.2 1.2 102 chr2L 16818788 intron,intron CG13280 -,mdy + chr2L 16818839 intron,intron CG13280 -,mdy + chr2L 16818890 intron,intron CG13280 -,mdy + chr2L_4_16815001 chr2L_16815001 RAL-105 214 chr2L 17000128 17000146 chr2L 17000251 17000268 4 122 0.0 2.5 1.2 1.8 140 chr2L 17000128 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000268 intergenic not near genes chr2L_4_17000001 chr2L_17000001 RAL-105 215 chr2L 17273206 17273219 chr2L 17277985 17278001 F-element 6 4782 4.5 4.0 4.2 1.2 4795 chr2L 17273206 intergenic not near genes chr2L 17275604 intergenic not near genes chr2L 17278001 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-105 216 chr2L 17281000 17281030 chr2L 17281077 17281100 5 75 3.0 1.5 2.2 1.6 100 chr2L 17281000 intergenic CR45729 + chr2L 17281050 intergenic not near genes chr2L 17281100 intergenic not near genes chr2L_5_17280001 chr2L_17280001 RAL-105 217 chr2L 17287057 17287072 chr2L 17287164 17287182 4 106 2.5 5.5 4.0 0.8 125 chr2L 17287057 exon CG15140 + chr2L 17287120 exon CG15140 + chr2L 17287182 exon CG15140 + chr2L_4_17285001 chr2L_17285001 RAL-105 218 chr2L 17303448 17303459 chr2L 17303621 17303627 4 174 1.5 2.5 2.0 1.3 179 chr2L 17303448 intergenic not near genes chr2L 17303538 intergenic not near genes chr2L 17303627 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-105 219 chr2L 17327912 17327926 chr2L 17327998 17328012 4 86 1.0 1.5 1.2 1.8 100 chr2L 17327912 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328012 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-105 220 chr2L 17380451 17380478 chr2L 17380720 17380748 8 270 1.0 4.5 2.8 2.1 297 chr2L 17380451 intron Lrch - chr2L 17380600 intron Lrch - chr2L 17380748 intron Lrch - chr2L_8_17380001 chr2L_17380001 RAL-105 221 chr2L 17569499 17569518 chr2L 17569601 17569620 8 102 3.0 2.5 2.8 2.1 121 chr2L 17569499 intergenic not near genes chr2L 17569560 intergenic not near genes chr2L 17569620 intergenic not near genes chr2L_8_17565001 chr2L_17565001 RAL-105 222 chr2L 17580896 17580911 chr2L 17581750 17581765 4 854 0.5 0.0 0.2 3.3 869 chr2L 17580896 intergenic not near genes chr2L 17581330 intergenic not near genes chr2L 17581765 intergenic not near genes chr2L_4_17580001 chr2L_17580001 RAL-105 223 chr2L 17637144 17637173 chr2L 17637222 17637251 4 78 0.5 1.0 0.8 2.2 107 chr2L 17637144 intergenic not near genes chr2L 17637198 intergenic not near genes chr2L 17637251 intergenic not near genes chr2L_4_17635001 chr2L_17635001 RAL-105 224 chr2L 17819924 17819946 chr2L 17825126 17825149 copia 4 5201 0.5 1.0 0.8 2.2 5225 chr2L 17819924 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825149 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-105 225 chr2L 17880594 17880619 chr2L 17880706 17880731 4 112 0.5 1.0 0.8 2.2 137 chr2L 17880594 intergenic not near genes chr2L 17880662 intergenic not near genes chr2L 17880731 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-105 226 chr2L 18002110 18002135 chr2L 18002272 18002297 7 163 3.0 1.0 2.0 2.3 187 chr2L 18002110 intergenic not near genes chr2L 18002204 intergenic not near genes chr2L 18002297 intergenic not near genes chr2L_7_18000001 chr2L_18000001 RAL-105 227 chr2L 18078275 18078304 chr2L 18078361 18078387 16 85 5.5 5.5 5.5 2.5 112 chr2L 18078275 5` UTR Arr1 + chr2L 18078331 5` UTR Arr1 + chr2L 18078387 5` UTR Arr1 + chr2L_16_18075001 chr2L_18075001 RAL-105 228 chr2L 18079816 18079835 chr2L 18079902 18079921 5 85 0.5 0.5 0.5 3.3 105 chr2L 18079816 intron Arr1 + chr2L 18079868 intron Arr1 + chr2L 18079921 intron Arr1 + chr2L_5_18075001 chr2L_18075001 RAL-105 229 chr2L 18107796 18107809 chr2L 18107879 18107892 4 83 7.0 3.5 5.2 0.6 96 chr2L 18107796 intergenic not near genes chr2L 18107844 intergenic not near genes chr2L 18107892 intergenic not near genes chr2L_4_18105001 chr2L_18105001 RAL-105 230 chr2L 18281780 18281796 chr2L 18281875 18281890 6 94 1.0 1.0 1.0 3.0 110 chr2L 18281780 intergenic not near genes chr2L 18281835 intergenic not near genes chr2L 18281890 intergenic not near genes chr2L_6_18280001 chr2L_18280001 RAL-105 231 chr2L 18344913 18344936 chr2L 18345027 18345050 7 113 1.0 2.0 1.5 2.8 137 chr2L 18344913 intron Fas3 + chr2L 18344982 intron Fas3 + chr2L 18345050 intron Fas3 + chr2L_7_18340001 chr2L_18340001 RAL-105 232 chr2L 18354664 18354687 chr2L 18354738 18354766 5 78 2.5 2.5 2.5 1.4 102 chr2L 18354664 intron Fas3 + chr2L 18354715 intron Fas3 + chr2L 18354766 intron Fas3 + chr2L_5_18350001 chr2L_18350001 RAL-105 233 chr2L 18406401 18406427 chr2L 18406491 18406520 5 91 4.0 2.0 3.0 1.2 119 chr2L 18406401 intergenic not near genes chr2L 18406460 intergenic not near genes chr2L 18406520 intergenic not near genes chr2L_5_18405001 chr2L_18405001 RAL-105 234 chr2L 18442356 18442375 chr2L 18442435 18442454 7 79 0.0 5.0 2.5 2.0 98 chr2L 18442356 3` UTR RpS26 - chr2L 18442405 3` UTR RpS26 - chr2L 18442454 3` UTR RpS26 - chr2L_7_18440001 chr2L_18440001 RAL-105 235 chr2L 18444537 18444550 chr2L 18444611 18444633 4 81 4.0 9.5 6.8 0.5 96 chr2L 18444537 3` UTR ncm - chr2L 18444585 3` UTR ncm - chr2L 18444633 3` UTR ncm - chr2L_4_18440001 chr2L_18440001 RAL-105 236 chr2L 18455306 18455326 chr2L 18455532 18455553 4 227 2.0 4.0 3.0 1.0 247 chr2L 18455306 3` UTR Ntf-2r + chr2L 18455430 intergenic Ntf-2r +,let-7-C + chr2L 18455553 intergenic Ntf-2r +,let-7-C + chr2L_4_18455001 chr2L_18455001 RAL-105 237 chr2L 18628457 18628487 chr2L 18628547 18628577 8 90 2.0 4.0 3.0 2.0 120 chr2L 18628457 intron MESR3 + chr2L 18628517 intron MESR3 + chr2L 18628577 intron MESR3 + chr2L_8_18625001 chr2L_18625001 RAL-105 238 chr2L 18762360 18762373 chr2L 18762435 18762464 6 84 4.5 1.5 3.0 1.5 104 chr2L 18762360 intergenic not near genes chr2L 18762412 intergenic ham - chr2L 18762464 intergenic ham - chr2L_6_18760001 chr2L_18760001 RAL-105 239 chr2L 18767637 18767673 chr2L 18767715 18767752 12 77 3.0 1.5 2.2 3.8 115 chr2L 18767637 intron ham - chr2L 18767694 intron ham - chr2L 18767752 intron ham - chr2L_12_18765001 chr2L_18765001 RAL-105 240 chr2L 18812558 18812574 chr2L 18812821 18812836 4 263 3.5 2.0 2.8 1.1 278 chr2L 18812558 intergenic CG17325 +,CG42305 + chr2L 18812697 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812836 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-105 241 chr2L 18868109 18868130 chr2L 18868195 18868216 5 86 3.0 4.5 3.8 1.0 107 chr2L 18868109 intron tup - chr2L 18868162 intron tup - chr2L 18868216 intron tup - chr2L_5_18865001 chr2L_18865001 RAL-105 242 chr2L 18883854 18883888 chr2L 18883935 18883960 9 81 1.0 0.5 0.8 5.0 106 chr2L 18883854 intergenic not near genes chr2L 18883907 intergenic not near genes chr2L 18883960 intergenic not near genes chr2L_9_18880001 chr2L_18880001 RAL-105 243 chr2L 18898402 18898421 chr2L 18898481 18898502 4 81 2.5 1.5 2.0 1.3 100 chr2L 18898402 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898502 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-105 244 chr2L 18981751 18981783 chr2L 18981828 18981853 4 72 1.0 1.5 1.2 1.8 102 chr2L 18981751 intron Swip-1 - chr2L 18981802 intron Swip-1 - chr2L 18981853 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-105 245 chr2L 18990330 18990342 chr2L 18990438 18990447 4 106 1.5 2.5 2.0 1.3 117 chr2L 18990330 intergenic CG15170 - chr2L 18990388 intergenic CG15170 - chr2L 18990447 intergenic CG15170 - chr2L_4_18990001 chr2L_18990001 RAL-105 246 chr2L 19018305 19018311 chr2L 19018364 19018389 5 67 1.5 2.0 1.8 1.8 84 chr2L 19018305 intergenic not near genes chr2L 19018347 intergenic not near genes chr2L 19018389 intergenic not near genes chr2L_5_19015001 chr2L_19015001 RAL-105 247 chr2L 19024096 19024097 chr2L 21768291 21768293 12 2744195 11.0 12.0 11.5 1.0 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_12_20395001 chr2L_20395001 RAL-105 248 chr2L 19035918 19035947 chr2L 19036006 19036037 10 88 2.5 2.5 2.5 2.9 119 chr2L 19035918 intron mib2 + chr2L 19035978 intron mib2 + chr2L 19036037 intron mib2 + chr2L_10_19035001 chr2L_19035001 RAL-105 249 chr2L 19043302 19043308 chr2L 19043393 19043398 4 90 7.5 0.0 3.8 0.8 96 chr2L 19043302 exon Catsup + chr2L 19043350 3` UTR Catsup + chr2L 19043398 3` UTR Catsup + chr2L_4_19040001 chr2L_19040001 RAL-105 250 chr2L 19070281 19070300 chr2L 19070374 19070392 7 92 5.0 5.5 5.2 1.1 111 chr2L 19070281 intergenic CG10702 - chr2L 19070336 intergenic CG10702 - chr2L 19070392 intergenic not near genes chr2L_7_19070001 chr2L_19070001 RAL-105 251 chr2L 19145184 19145193 chr2L 19145269 19145278 4 84 4.0 6.0 5.0 0.7 94 chr2L 19145184 intron brat + chr2L 19145231 intron brat + chr2L 19145278 intron brat + chr2L_4_19145001 chr2L_19145001 RAL-105 252 chr2L 19189981 19190002 chr2L 19190135 19190153 4 153 1.0 4.5 2.8 1.1 172 chr2L 19189981 intergenic pigeon +,drl + chr2L 19190067 intergenic pigeon +,drl + chr2L 19190153 intergenic drl +,pigeon + chr2L_4_19190001 chr2L_19190001 RAL-105 253 chr2L 19199667 19199706 chr2L 19199744 19199780 14 74 2.5 2.5 2.5 4.0 113 chr2L 19199667 intron drl + chr2L 19199724 intron drl + chr2L 19199780 intron drl + chr2L_14_19195001 chr2L_19195001 RAL-105 254 chr2L 19268776 19268805 chr2L 19268882 19268911 4 105 0.5 6.0 3.2 1.0 135 chr2L 19268776 intergenic CR44190 - chr2L 19268844 intergenic CR44190 - chr2L 19268911 intergenic CR44190 - chr2L_4_19265001 chr2L_19265001 RAL-105 255 chr2L 19331678 19331695 chr2L 19331742 19331774 5 74 4.5 1.5 3.0 1.2 96 chr2L 19331678 intergenic not near genes chr2L 19331726 intergenic not near genes chr2L 19331774 intergenic not near genes chr2L_5_19330001 chr2L_19330001 RAL-105 256 chr2L 19345018 19345043 chr2L 19357227 19357251 blood 8 12209 2.0 3.5 2.8 2.1 12233 chr2L 19345018 intron dnt - chr2L 19351134 intron dnt - chr2L 19357251 intron dnt - chr2L_8_19350001 chr2L_19350001 RAL-105 257 chr2L 19357545 19357568 chr2L 19357635 19357658 9 90 1.0 2.0 1.5 3.6 113 chr2L 19357545 intron dnt - chr2L 19357602 intron dnt - chr2L 19357658 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-105 258 chr2L 19357832 19357852 chr2L 19357999 19358017 4 162 5.0 2.0 3.5 0.9 185 chr2L 19357832 intron dnt - chr2L 19357924 intron dnt - chr2L 19358017 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-105 259 chr2L 19359181 19359212 chr2L 19359269 19359305 6 92 2.5 1.5 2.0 2.0 124 chr2L 19359181 intron dnt - chr2L 19359243 intron dnt - chr2L 19359305 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-105 260 chr2L 19380509 19380529 chr2L 19380589 19380609 7 80 4.0 1.0 2.5 2.0 100 chr2L 19380509 intergenic CG17350 + chr2L 19380559 intergenic CG17350 + chr2L 19380609 intergenic CG17350 + chr2L_7_19380001 chr2L_19380001 RAL-105 261 chr2L 19458390 19458409 chr2L 19458493 19458512 5 103 0.5 0.5 0.5 3.3 122 chr2L 19458390 intergenic not near genes chr2L 19458451 intergenic not near genes chr2L 19458512 intergenic not near genes chr2L_5_19455001 chr2L_19455001 RAL-105 262 chr2L 19487217 19487238 chr2L 19487303 19487325 6 87 1.0 3.5 2.2 1.9 108 chr2L 19487217 intergenic CG13083 + chr2L 19487271 intergenic CG13083 + chr2L 19487325 intergenic CG13083 + chr2L_6_19485001 chr2L_19485001 RAL-105 263 chr2L 19544592 19544631 chr2L 19544666 19544675 16 71 4.0 5.0 4.5 2.9 83 chr2L 19544592 exon ref(2)P + chr2L 19544634 exon ref(2)P + chr2L 19544675 exon ref(2)P + chr2L_16_19540001 chr2L_19540001 RAL-105 264 chr2L 19620092 19620096 chr2L 19621081 19621084 jockey 4 988 8.5 5.0 6.8 0.5 992 chr2L 19620092 intron Lar + chr2L 19620588 intron Lar + chr2L 19621084 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-105 265 chr2L 19620098 19620105 chr2L 19621080 19621094 jockey 4 987 7.5 4.5 6.0 0.6 996 chr2L 19620098 intron Lar + chr2L 19620596 intron Lar + chr2L 19621094 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-105 266 chr2L 19620109 19620125 chr2L 19621079 19621113 jockey 6 985 4.0 4.0 4.0 1.2 1004 chr2L 19620109 intron Lar + chr2L 19620611 intron Lar + chr2L 19621113 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-105 267 chr2L 19652575 19652601 chr2L 19674011 19674036 opus 5 21436 1.0 0.0 0.5 3.3 21461 chr2L 19652575 intron Lar + chr2L 19663306 intron Lar + chr2L 19674036 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-105 268 chr2L 19703537 19703548 chr2L 19712673 19712684 roo 5 9136 4.0 2.0 3.0 1.2 9147 chr2L 19703537 intron Lar + chr2L 19708110 intron Lar + chr2L 19712684 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-105 269 chr2L 19737366 19737375 chr2L 19740835 19740844 1360 6 3469 5.5 6.0 5.8 0.9 3478 chr2L 19737366 intergenic Nf-YB + chr2L 19739105 intergenic not near genes chr2L 19740844 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-105 270 chr2L 19737376 19737387 chr2L 19740834 19740856 1360 4 3462 4.0 5.5 4.8 0.7 3480 chr2L 19737376 intergenic Nf-YB + chr2L 19739116 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-105 271 chr2L 19754876 19754903 chr2L 19754960 19754987 7 83 3.0 6.0 4.5 1.3 111 chr2L 19754876 intron CG10631 - chr2L 19754932 intron CG10631 - chr2L 19754987 intron CG10631 - chr2L_7_19750001 chr2L_19750001 RAL-105 272 chr2L 19963505 19963514 chr2L 19963570 19963583 6 72 2.0 5.0 3.5 1.3 78 chr2L 19963505 exon CG16772 + chr2L 19963544 exon CG16772 + chr2L 19963583 exon CG16772 + chr2L_6_19960001 chr2L_19960001 RAL-105 273 chr2L 20005887 20005896 chr2L 20010955 20010972 flea 5 5073 1.0 3.0 2.0 1.7 5085 chr2L 20005887 intron CG43861 - chr2L 20008430 intron CG43861 - chr2L 20010972 intron CG43861 - chr2L_5_20005001 chr2L_20005001 RAL-105 274 chr2L 20085464 20085499 chr2L 20085556 20085590 6 92 4.5 3.5 4.0 1.2 126 chr2L 20085464 intron neb + chr2L 20085527 intron neb + chr2L 20085590 intron neb + chr2L_6_20085001 chr2L_20085001 RAL-105 275 chr2L 20272116 20272140 chr2L 20282827 20282851 copia 4 10711 2.0 0.5 1.2 1.8 10735 chr2L 20272116 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282851 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-105 276 chr2L 20498690 20498706 chr2L 20498789 20498805 4 99 2.5 2.5 2.5 1.1 115 chr2L 20498690 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498805 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-105 277 chr2L 20533683 20533714 chr2L 20534262 20534293 10 578 2.0 1.5 1.8 3.6 610 chr2L 20533683 intergenic not near genes chr2L 20533988 intergenic not near genes chr2L 20534293 intergenic not near genes chr2L_10_20530001 chr2L_20530001 RAL-105 278 chr2L 20546047 20546071 chr2L 20546124 20546147 10 77 0.0 3.0 1.5 4.0 100 chr2L 20546047 intergenic not near genes chr2L 20546097 intergenic not near genes chr2L 20546147 intergenic not near genes chr2L_10_20545001 chr2L_20545001 RAL-105 279 chr2L 20553185 20553217 chr2L 20553261 20553293 5 76 2.0 0.5 1.2 2.3 108 chr2L 20553185 intergenic not near genes chr2L 20553239 intergenic not near genes chr2L 20553293 intergenic not near genes chr2L_5_20550001 chr2L_20550001 RAL-105 280 chr2L 20567333 20567353 chr2L 20567465 20567485 9 132 4.5 2.0 3.2 2.1 152 chr2L 20567333 intron CR45347 + chr2L 20567409 intron CR45347 + chr2L 20567485 intron CR45347 + chr2L_9_20565001 chr2L_20565001 RAL-105 281 chr2L 20576221 20576248 chr2L 20583689 20583716 blood 5 7468 1.5 3.0 2.2 1.6 7495 chr2L 20576221 intergenic not near genes chr2L 20579968 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-105 282 chr2L 20804707 20804733 chr2L 20804792 20804818 7 85 2.5 0.5 1.5 2.8 111 chr2L 20804707 intron CG9328 + chr2L 20804762 intron CG9328 + chr2L 20804818 intron CG9328 + chr2L_7_20800001 chr2L_20800001 RAL-105 283 chr2L 20967089 20967106 chr2L 20967175 20967192 6 86 1.0 2.5 1.8 2.1 103 chr2L 20967089 3` UTR CG42238 - chr2L 20967140 3` UTR CG42238 - chr2L 20967192 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-105 284 chr2L 20976645 20976681 chr2L 20981460 20981496 X-element 7 4815 1.0 2.0 1.5 2.8 4851 chr2L 20976645 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981496 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-105 285 chr2L 21020278 21020306 chr2L 21023953 21023983 NOF 6 3676 3.0 2.0 2.5 1.7 3705 chr2L 21020278 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-105 286 chr2L 21041140 21041165 chr2L 21049401 21049426 Tirant 4 8261 2.5 0.5 1.5 1.6 8286 chr2L 21041140 intron CG42238 - chr2L 21045283 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-105 287 chr2L 21076411 21076439 chr2L 21076497 21076526 12 83 3.0 2.5 2.8 3.2 115 chr2L 21076411 intron tadr + chr2L 21076468 intron tadr + chr2L 21076526 intron tadr + chr2L_12_21075001 chr2L_21075001 RAL-105 288 chr2L 21199227 21199235 chr2L 21199304 21199312 4 77 3.0 1.5 2.2 1.2 85 chr2L 21199227 intergenic CG31624 -,Ret - chr2L 21199270 3` UTR CG31624 - chr2L 21199312 3` UTR CG31624 - chr2L_4_21195001 chr2L_21195001 RAL-105 289 chr2L 21246510 21246534 chr2L 21246605 21246628 10 93 6.0 3.5 4.8 1.7 118 chr2L 21246510 intron Hr39 + chr2L 21246569 intron Hr39 + chr2L 21246628 intron Hr39 + chr2L_10_21245001 chr2L_21245001 RAL-105 290 chr2L 21286613 21286629 chr2L 21286692 21286708 5 79 1.0 1.0 1.0 2.5 95 chr2L 21286613 exon Mio - chr2L 21286660 intron Mio - chr2L 21286708 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-105 291 chr2L 21725940 21725964 chr2L 21726023 21726030 7 79 2.0 0.5 1.2 3.2 90 chr2L 21725940 intron CG31619 + chr2L 21725985 intron CG31619 + chr2L 21726030 intron CG31619 + chr2L_7_21725001 chr2L_21725001 RAL-105 292 chr2L 21755508 21755522 chr2L 21755632 21755646 5 124 1.0 5.0 3.0 1.2 138 chr2L 21755508 intron step - chr2L 21755577 intron step - chr2L 21755646 intron step - chr2L_5_21755001 chr2L_21755001 RAL-105 293 chr2L 21819014 21819031 chr2L 21819106 21819126 6 94 1.5 0.5 1.0 3.0 112 chr2L 21819014 intergenic CR44786 + chr2L 21819070 intergenic CR44786 + chr2L 21819126 intergenic CR44786 + chr2L_6_21815001 chr2L_21815001 RAL-105 294 chr2L 21981697 21981716 chr2L 21990862 21990881 roo 4 9165 1.0 4.0 2.5 1.1 9184 chr2L 21981697 exon CG2528 - chr2L 21986289 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-105 295 chr2L 22011917 22011948 chr2L 22011998 22012029 7 81 2.5 2.5 2.5 2.0 112 chr2L 22011917 intergenic not near genes chr2L 22011973 intergenic not near genes chr2L 22012029 intergenic not near genes chr2L_7_22010001 chr2L_22010001 RAL-105 296 chr2L 23025927 23025951 chr2L 23026020 23026045 4 94 5.5 8.5 7.0 0.5 118 chr2L 23025927 intergenic Cht3 - chr2L 23025986 intergenic Cht3 - chr2L 23026045 intergenic Cht3 - chr2L_4_23025001 chr2L_23025001 RAL-105 297 chr2R 552753 552788 chr2R 553971 553996 1360 11 1212 2.5 2.5 2.5 3.1 1243 chr2R 552753 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553996 intron CG40378 + chr2R_11_550001 chr2R_550001 RAL-105 298 chr2R 2176498 2176513 chr2R 2176580 2176591 4 80 17.5 22.5 20.0 0.2 93 chr2R 2176498 intron CG17684 - chr2R 2176544 intron CG17684 - chr2R 2176591 intron CG17684 - chr2R_4_2175001 chr2R_2175001 RAL-105 299 chr2R 2942285 2942301 chr2R 2942388 2942404 5 103 1.0 1.0 1.0 2.5 119 chr2R 2942285 intron Scp1 - chr2R 2942344 intron Scp1 - chr2R 2942404 intron Scp1 - chr2R_5_2940001 chr2R_2940001 RAL-105 300 chr2R 2944973 2945007 chr2R 2945055 2945084 6 81 0.5 1.0 0.8 3.3 111 chr2R 2944973 intron Scp1 - chr2R 2945028 intron Scp1 - chr2R 2945084 intron Scp1 - chr2R_6_2945001 chr2R_2945001 RAL-105 301 chr2R 3089479 3089500 chr2R 3089659 3089670 4 173 11.0 8.0 9.5 0.4 191 chr2R 3089479 intron CG42596 + chr2R 3089574 intron CG42596 + chr2R 3089670 intron CG42596 + chr2R_4_3085001 chr2R_3085001 RAL-105 302 chr2R 3291928 3292102 chr2R 3915097 3915263 9 623164 6.5 15.5 11.0 0.8 623335 chr2R 3291928 intergenic not near genes chr2R 3603596 intergenic not near genes chr2R 3915263 intron uex - chr2R_9_3600001 chr2R_3600001 RAL-105 303 chr2R 3399227 3399261 chr2R 3399313 3399345 4 86 1.5 2.5 2.0 1.3 118 chr2R 3399227 intergenic not near genes chr2R 3399286 intergenic not near genes chr2R 3399345 intergenic not near genes chr2R_4_3395001 chr2R_3395001 RAL-105 304 chr2R 4312962 4313120 chr2R 4313046 4313212 8 88 1.5 3.0 2.2 2.5 250 chr2R 4312962 intergenic not near genes chr2R 4313087 intergenic not near genes chr2R 4313212 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-105 305 chr2R 4932586 4932595 chr2R 4933007 4933017 6 423 35.0 27.5 31.2 0.2 431 chr2R 4932586 intron Ir41a + chr2R 4932802 intron Ir41a + chr2R 4933017 intron Ir41a + chr2R_6_4930001 chr2R_4930001 RAL-105 306 chr2R 4933365 4933392 chr2R 4933927 4933956 9 563 2.0 7.0 4.5 1.6 591 chr2R 4933365 intron Ir41a + chr2R 4933660 intron Ir41a + chr2R 4933956 intron Ir41a + chr2R_9_4930001 chr2R_4930001 RAL-105 307 chr2R 5019280 5019300 chr2R 5019365 5019386 4 86 1.0 0.5 0.8 2.2 106 chr2R 5019280 intron Ir41a + chr2R 5019333 intron Ir41a + chr2R 5019386 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-105 308 chr2R 5188709 5188734 chr2R 5189402 5189427 gypsy8 10 692 1.5 3.0 2.2 3.1 718 chr2R 5188709 intron Nipped-A - chr2R 5189068 intron Nipped-A - chr2R 5189427 intron Nipped-A - chr2R_10_5185001 chr2R_5185001 RAL-105 309 chr2R 5237358 5237373 chr2R 5237440 5237455 6 82 0.5 0.0 0.2 5.0 97 chr2R 5237358 intron Nipped-A - chr2R 5237406 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_6_5235001 chr2R_5235001 RAL-105 310 chr2R 5472370 5472385 chr2R 5472461 5472479 7 93 0.0 2.0 1.0 3.5 109 chr2R 5472370 intron CG30440 - chr2R 5472424 intron CG30440 - chr2R 5472479 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-105 311 chr2R 5476354 5476381 chr2R 5476898 5476924 5 544 4.0 3.5 3.8 1.0 570 chr2R 5476354 intron CG30440 - chr2R 5476639 intron CG30440 - chr2R 5476924 intron CG30440 - chr2R_5_5475001 chr2R_5475001 RAL-105 312 chr2R 5581397 5581405 chr2R 5627605 5627614 4 46208 0.0 5.5 2.8 1.1 46217 chr2R 5581397 intergenic not near genes chr2R 5604506 exon Fis1 - chr2R 5627614 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-105 313 chr2R 5869279 5869306 chr2R 5874355 5874381 flea 10 5076 2.5 1.0 1.8 3.6 5102 chr2R 5869279 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874381 intergenic not near genes chr2R_10_5870001 chr2R_5870001 RAL-105 314 chr2R 5932798 5932828 chr2R 5932876 5932907 11 77 2.5 2.5 2.5 3.1 109 chr2R 5932798 intergenic not near genes chr2R 5932852 intergenic not near genes chr2R 5932907 intergenic not near genes chr2R_11_5930001 chr2R_5930001 RAL-105 315 chr2R 5933092 5933106 chr2R 5933319 5933335 5 228 3.0 1.5 2.2 1.6 243 chr2R 5933092 intergenic not near genes chr2R 5933214 intergenic not near genes chr2R 5933335 intergenic not near genes chr2R_5_5930001 chr2R_5930001 RAL-105 316 chr2R 6096726 6096750 chr2R 6101916 6101928 BS 7 5194 1.0 5.0 3.0 1.8 5202 chr2R 6096726 intron EcR - chr2R 6099327 intron EcR - chr2R 6101928 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-105 317 chr2R 6691123 6691139 chr2R 6691202 6691218 4 79 2.0 0.5 1.2 1.8 95 chr2R 6691123 intron CG9422 + chr2R 6691170 intron CG9422 + chr2R 6691218 intron CG9422 + chr2R_4_6690001 chr2R_6690001 RAL-105 318 chr2R 6696604 6696642 chr2R 6696687 6696725 11 81 2.5 3.0 2.8 2.9 121 chr2R 6696604 5` UTR Mob4 - chr2R 6696664 intergenic Mob4 -,Rab2 + chr2R 6696725 intergenic Rab2 +,Mob4 - chr2R_11_6695001 chr2R_6695001 RAL-105 319 chr2R 6978640 6978665 chr2R 6978823 6978848 12 183 2.5 2.5 2.5 3.4 208 chr2R 6978640 intron vimar - chr2R 6978744 intron vimar - chr2R 6978848 intron vimar - chr2R_12_6975001 chr2R_6975001 RAL-105 320 chr2R 7102648 7102664 chr2R 7102747 7102764 5 100 1.0 1.5 1.2 2.3 116 chr2R 7102648 intron esn + chr2R 7102706 intron esn + chr2R 7102764 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-105 321 chr2R 7153159 7153188 chr2R 7153245 7153274 7 79 3.0 2.5 2.8 1.8 115 chr2R 7153159 intron,intron pk +,Spn43Ab - chr2R 7153216 intron,intron pk +,Spn43Ab - chr2R 7153274 intron,intron pk +,Spn43Ab - chr2R_7_7150001 chr2R_7150001 RAL-105 322 chr2R 7171092 7171110 chr2R 7174806 7174824 7 3714 33.5 24.0 28.8 0.2 3732 chr2R 7171092 intron pk + chr2R 7172958 intron pk + chr2R 7174824 intron pk + chr2R_7_7170001 chr2R_7170001 RAL-105 323 chr2R 7235822 7235851 chr2R 7240910 7240943 jockey 8 5091 4.0 3.0 3.5 1.8 5121 chr2R 7235822 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-105 324 chr2R 7252496 7252526 chr2R 7253259 7253288 10 762 2.0 3.0 2.5 2.9 792 chr2R 7252496 intergenic not near genes chr2R 7252892 intergenic not near genes chr2R 7253288 intergenic not near genes chr2R_10_7250001 chr2R_7250001 RAL-105 325 chr2R 7340081 7340100 chr2R 7346942 7346961 7 6861 20.5 28.5 24.5 0.3 6880 chr2R 7340081 intron Dscam1 - chr2R 7343521 intron,5` UTR Dscam1 -,CR44071 + chr2R 7346961 intron Dscam1 - chr2R_7_7340001 chr2R_7340001 RAL-105 326 chr2R 7512977 7512996 chr2R 7515335 7515352 6 2357 11.5 25.0 18.2 0.3 2375 chr2R 7512977 intergenic az2 - chr2R 7514164 3` UTR CG1603 - chr2R 7515352 exon CG1603 - chr2R_6_7510001 chr2R_7510001 RAL-105 327 chr2R 7551686 7551715 chr2R 7551775 7551806 8 89 2.0 4.0 3.0 2.0 120 chr2R 7551686 intron Corin + chr2R 7551746 intron Corin + chr2R 7551806 intron Corin + chr2R_8_7550001 chr2R_7550001 RAL-105 328 chr2R 7608419 7608433 chr2R 7613622 7613636 I-element 4 5203 0.0 0.0 0.0 4.0 5217 chr2R 7608419 intron CG1358 - chr2R 7611028 intron CG1358 - chr2R 7613636 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-105 329 chr2R 7809578 7809601 chr2R 7809655 7809679 6 77 1.0 3.0 2.0 2.0 101 chr2R 7809578 3` UTR sax + chr2R 7809628 3` UTR sax + chr2R 7809679 3` UTR sax + chr2R_6_7805001 chr2R_7805001 RAL-105 330 chr2R 7815676 7815697 chr2R 7822144 7822166 Burdock 6 6468 2.0 1.5 1.8 2.1 6490 chr2R 7815676 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822166 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-105 331 chr2R 8076677 8076696 chr2R 8076757 8076776 5 80 5.0 1.0 3.0 1.2 99 chr2R 8076677 intron lig + chr2R 8076726 intron lig + chr2R 8076776 intron lig + chr2R_5_8075001 chr2R_8075001 RAL-105 332 chr2R 8249563 8249845 chr2R 8249645 8249939 8 85 0.5 0.5 0.5 5.3 376 chr2R 8249563 5` UTR CG44439 - chr2R 8249751 intergenic CG44439 - chr2R 8249939 intergenic CG44439 - chr2R_8_8245001 chr2R_8245001 RAL-105 333 chr2R 8266531 8266556 chr2R 8266649 8266653 5 111 6.0 3.0 4.5 0.9 122 chr2R 8266531 intron CG30375 - chr2R 8266592 exon CG30375 - chr2R 8266653 exon CG30375 - chr2R_5_8265001 chr2R_8265001 RAL-105 334 chr2R 8330861 8330893 chr2R 8331347 8331379 roo 10 485 2.0 1.0 1.5 4.0 518 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_10_8330001 chr2R_8330001 RAL-105 335 chr2R 8478222 8478250 chr2R 8478314 8478317 7 87 4.5 2.0 3.2 1.7 95 chr2R 8478222 intron mtt - chr2R 8478270 intron mtt - chr2R 8478317 intron mtt - chr2R_7_8475001 chr2R_8475001 RAL-105 336 chr2R 8508768 8508792 chr2R 8508851 8508858 7 79 1.5 6.0 3.8 1.5 90 chr2R 8508768 intron mtt - chr2R 8508813 intron mtt - chr2R 8508858 intron mtt - chr2R_7_8505001 chr2R_8505001 RAL-105 337 chr2R 8554125 8554136 chr2R 8554208 8554219 4 83 3.0 4.5 3.8 0.8 94 chr2R 8554125 intergenic not near genes chr2R 8554172 intergenic not near genes chr2R 8554219 intergenic not near genes chr2R_4_8550001 chr2R_8550001 RAL-105 338 chr2R 8615778 8615806 chr2R 8615891 8615918 6 113 1.0 2.5 1.8 2.1 140 chr2R 8615778 intron Cirl + chr2R 8615848 intron Cirl + chr2R 8615918 5` UTR Cirl + chr2R_6_8615001 chr2R_8615001 RAL-105 339 chr2R 8658235 8658263 chr2R 8658310 8658339 5 73 2.0 2.0 2.0 1.7 104 chr2R 8658235 intron ptc + chr2R 8658287 intron ptc + chr2R 8658339 intron ptc + chr2R_5_8655001 chr2R_8655001 RAL-105 340 chr2R 8691130 8691143 chr2R 8691598 8691612 6 468 2.0 4.0 3.0 1.5 482 chr2R 8691130 intergenic Jon44E + chr2R 8691371 intergenic Jon44E + chr2R 8691612 exon Jon44E + chr2R_6_8690001 chr2R_8690001 RAL-105 341 chr2R 8714706 8714719 chr2R 8714793 8714806 4 87 0.0 2.5 1.2 1.8 100 chr2R 8714706 3` UTR PGRP-SC1b + chr2R 8714756 3` UTR PGRP-SC1b + chr2R 8714806 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-105 342 chr2R 8722780 8722794 chr2R 8723003 8723035 pogo 6 236 2.0 4.5 3.2 1.4 255 chr2R 8722780 intron CG14767 - chr2R 8722908 intron CG14767 - chr2R 8723035 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-105 343 chr2R 8799254 8799282 chr2R 8799406 8799414 6 144 4.0 2.5 3.2 1.4 160 chr2R 8799254 intron sns + chr2R 8799334 intron sns + chr2R 8799414 intron sns + chr2R_6_8795001 chr2R_8795001 RAL-105 344 chr2R 8960461 8960478 chr2R 8960613 8960630 4 152 5.0 5.5 5.2 0.6 169 chr2R 8960461 3` UTR babo + chr2R 8960546 3` UTR babo + chr2R 8960630 3` UTR babo + chr2R_4_8960001 chr2R_8960001 RAL-105 345 chr2R 8969811 8969841 chr2R 8969903 8969934 12 92 2.5 5.0 3.8 2.5 123 chr2R 8969811 3` UTR CG8213 - chr2R 8969872 3` UTR CG8213 - chr2R 8969934 3` UTR CG8213 - chr2R_12_8965001 chr2R_8965001 RAL-105 346 chr2R 8976609 8976639 chr2R 8976688 8976718 10 78 3.0 4.5 3.8 2.1 109 chr2R 8976609 intron CG8213 - chr2R 8976664 intron CG8213 - chr2R 8976718 intron CG8213 - chr2R_10_8975001 chr2R_8975001 RAL-105 347 chr2R 9212692 9212725 chr2R 9213178 9213182 roo 6 478 4.5 5.5 5.0 1.0 490 chr2R 9212692 intergenic CR45309 + chr2R 9212937 intergenic CR45309 + chr2R 9213182 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-105 348 chr2R 9324395 9324431 chr2R 9327391 9327428 8 2996 23.5 24.0 23.8 0.3 3033 chr2R 9324395 intron,intron CG13739 -,CG13954 - chr2R 9325912 intron,intron CG13739 -,CG13954 - chr2R 9327428 intron,intron CG13739 -,CG13954 - chr2R_8_9325001 chr2R_9325001 RAL-105 349 chr2R 9329999 9330027 chr2R 9330085 9330111 10 84 3.5 2.0 2.8 2.6 112 chr2R 9329999 intron,intron CG13739 -,CG13954 - chr2R 9330055 intron,intron CG13739 -,CG13954 - chr2R 9330111 intron,intron CG13739 -,CG13954 - chr2R_10_9330001 chr2R_9330001 RAL-105 350 chr2R 9368147 9368155 chr2R 9368204 9368228 5 66 1.0 0.5 0.8 2.8 81 chr2R 9368147 intron CG13954 - chr2R 9368188 intron CG13954 - chr2R 9368228 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-105 351 chr2R 9378109 9378137 chr2R 9378191 9378219 12 80 4.0 4.0 4.0 2.4 110 chr2R 9378109 intron CG13954 - chr2R 9378164 intron CG13954 - chr2R 9378219 intron CG13954 - chr2R_12_9375001 chr2R_9375001 RAL-105 352 chr2R 9412077 9412097 chr2R 9412188 9412208 5 110 3.5 0.0 1.8 1.8 131 chr2R 9412077 intron wun - chr2R 9412142 intron wun - chr2R 9412208 intron wun - chr2R_5_9410001 chr2R_9410001 RAL-105 353 chr2R 9429029 9429055 chr2R 9429333 9429359 10 304 1.0 2.5 1.8 3.6 330 chr2R 9429029 intron Pdk + chr2R 9429194 intron Pdk + chr2R 9429359 intron Pdk + chr2R_10_9425001 chr2R_9425001 RAL-105 354 chr2R 10001530 10001545 chr2R 10001613 10001627 7 81 3.5 1.0 2.2 2.2 97 chr2R 10001530 intron Pka-R2 - chr2R 10001578 intron Pka-R2 - chr2R 10001627 intron Pka-R2 - chr2R_7_10000001 chr2R_10000001 RAL-105 355 chr2R 10005847 10005881 chr2R 10007012 10007046 1360 8 1163 4.0 4.5 4.2 1.5 1199 chr2R 10005847 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007046 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-105 356 chr2R 10216199 10216220 chr2R 10216277 10216298 4 78 2.0 3.5 2.8 1.1 99 chr2R 10216199 intron,intron CG12912 -,Hr46 - chr2R 10216248 intron,intron CG12912 -,Hr46 - chr2R 10216298 intron,intron CG12912 -,Hr46 - chr2R_4_10215001 chr2R_10215001 RAL-105 357 chr2R 10266499 10266531 chr2R 10266590 10266601 5 84 2.0 2.5 2.2 1.6 102 chr2R 10266499 intron CG12910 + chr2R 10266550 intron CG12910 + chr2R 10266601 intron CG12910 + chr2R_5_10265001 chr2R_10265001 RAL-105 358 chr2R 10313330 10313353 chr2R 10313418 10313441 5 88 1.0 2.5 1.8 1.8 111 chr2R 10313330 intergenic not near genes chr2R 10313386 intergenic not near genes chr2R 10313441 intergenic Ndg + chr2R_5_10310001 chr2R_10310001 RAL-105 359 chr2R 10352671 10352705 chr2R 10352748 10352779 6 74 0.5 0.5 0.5 4.0 108 chr2R 10352671 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352725 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352779 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_6_10350001 chr2R_10350001 RAL-105 360 chr2R 10387987 10388000 chr2R 10388082 10388097 4 96 0.0 4.0 2.0 1.3 110 chr2R 10387987 intron CG42732 - chr2R 10388042 intron CG42732 - chr2R 10388097 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-105 361 chr2R 10449196 10449221 chr2R 10449504 10449527 7 307 2.5 3.5 3.0 1.8 331 chr2R 10449196 intron Galphao + chr2R 10449362 intron,3` UTR Galphao +,Cyp49a1 - chr2R 10449527 intron,3` UTR Galphao +,Cyp49a1 - chr2R_7_10445001 chr2R_10445001 RAL-105 362 chr2R 10454095 10454130 chr2R 10454172 10454207 9 76 1.0 3.0 2.0 3.0 112 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454151 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_9_10450001 chr2R_10450001 RAL-105 363 chr2R 10469029 10469052 chr2R 10469155 10469178 4 126 1.0 4.5 2.8 1.1 149 chr2R 10469029 intron CG11777 + chr2R 10469104 intron CG11777 + chr2R 10469178 intron CG11777 + chr2R_4_10465001 chr2R_10465001 RAL-105 364 chr2R 10658057 10658086 chr2R 10658149 10658178 13 92 2.0 2.5 2.2 4.1 121 chr2R 10658057 intergenic not near genes chr2R 10658118 intergenic not near genes chr2R 10658178 intergenic not near genes chr2R_13_10655001 chr2R_10655001 RAL-105 365 chr2R 10671251 10671278 chr2R 10671329 10671353 8 78 6.0 0.0 3.0 2.0 102 chr2R 10671251 intergenic not near genes chr2R 10671302 intergenic not near genes chr2R 10671353 intergenic not near genes chr2R_8_10670001 chr2R_10670001 RAL-105 366 chr2R 10780440 10780461 chr2R 10780562 10780584 6 123 4.0 0.5 2.2 1.9 144 chr2R 10780440 intron CG33144 - chr2R 10780512 intron CG33144 - chr2R 10780584 intron CG33144 - chr2R_6_10780001 chr2R_10780001 RAL-105 367 chr2R 10790145 10790177 chr2R 10790233 10790265 9 88 3.0 4.0 3.5 2.0 120 chr2R 10790145 intron CG33144 - chr2R 10790205 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_9_10790001 chr2R_10790001 RAL-105 368 chr2R 10937801 10937828 chr2R 10937939 10937966 7 137 0.0 1.0 0.5 4.7 165 chr2R 10937801 intergenic not near genes chr2R 10937884 intergenic not near genes chr2R 10937966 intergenic Spn47C - chr2R_7_10935001 chr2R_10935001 RAL-105 369 chr2R 10942801 10942814 chr2R 10942882 10942896 5 82 2.0 3.5 2.8 1.3 95 chr2R 10942801 intergenic not near genes chr2R 10942848 intergenic not near genes chr2R 10942896 intergenic not near genes chr2R_5_10940001 chr2R_10940001 RAL-105 370 chr2R 10948030 10948060 chr2R 10955588 10955597 17.6 12 7556 0.5 3.5 2.0 4.0 7567 chr2R 10948030 intergenic not near genes chr2R 10951814 intergenic not near genes chr2R 10955597 intergenic not near genes chr2R_12_10950001 chr2R_10950001 RAL-105 371 chr2R 11009812 11009840 chr2R 11018986 11019010 roo 8 9173 2.0 5.0 3.5 1.8 9198 chr2R 11009812 intron luna - chr2R 11014411 intron luna - chr2R 11019010 intron luna - chr2R_8_11010001 chr2R_11010001 RAL-105 372 chr2R 11019875 11019912 chr2R 11024941 11024978 jockey 8 5066 2.5 2.0 2.2 2.5 5103 chr2R 11019875 intron luna - chr2R 11022426 intron luna - chr2R 11024978 intron luna - chr2R_8_11020001 chr2R_11020001 RAL-105 373 chr2R 11091991 11091997 chr2R 11092069 11092076 4 78 3.5 6.0 4.8 0.7 85 chr2R 11091991 intron luna - chr2R 11092034 intron luna - chr2R 11092076 intron luna - chr2R_4_11090001 chr2R_11090001 RAL-105 374 chr2R 11207812 11207841 chr2R 11208005 11208034 BS 7 193 3.5 1.5 2.5 2.0 222 chr2R 11207812 intron shn + chr2R 11207923 intron shn + chr2R 11208034 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-105 375 chr2R 11391238 11391270 chr2R 11391314 11391343 10 74 4.0 3.0 3.5 2.2 105 chr2R 11391238 intron sprt - chr2R 11391290 intron sprt - chr2R 11391343 intron sprt - chr2R_10_11390001 chr2R_11390001 RAL-105 376 chr2R 11415522 11415545 chr2R 11418671 11418693 opus 4 3149 3.5 2.0 2.8 1.1 3171 chr2R 11415522 intron Drip - chr2R 11417108 intron Drip - chr2R 11418693 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-105 377 chr2R 11419879 11419891 chr2R 11419995 11420020 5 127 3.5 0.0 1.8 1.8 141 chr2R 11419879 intron Drip - chr2R 11419950 intron Drip - chr2R 11420020 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-105 378 chr2R 11472649 11472674 chr2R 11473846 11473871 pogo 5 1196 0.5 3.5 2.0 1.7 1222 chr2R 11472649 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473871 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-105 379 chr2R 11494605 11494622 chr2R 11494692 11494711 5 88 3.5 6.0 4.8 0.9 106 chr2R 11494605 intron inv + chr2R 11494658 intron inv + chr2R 11494711 intron inv + chr2R_5_11490001 chr2R_11490001 RAL-105 380 chr2R 11663740 11663757 chr2R 11663843 11663860 6 103 2.5 4.0 3.2 1.4 120 chr2R 11663740 intron Roc2 - chr2R 11663800 intron Roc2 - chr2R 11663860 intron Roc2 - chr2R_6_11660001 chr2R_11660001 RAL-105 381 chr2R 11675604 11675631 chr2R 11675687 11675714 5 83 2.5 0.5 1.5 2.0 110 chr2R 11675604 intron Roc2 - chr2R 11675659 intron Roc2 - chr2R 11675714 intron Roc2 - chr2R_5_11675001 chr2R_11675001 RAL-105 382 chr2R 8518779 8518804 chr2R 12066173 12066198 8 3547396 1.0 11.5 6.2 1.1 3547419 chr2R 8518779 intron mtt - chr2R 10292488 intron CAP + chr2R 12066198 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-105 383 chr2R 12187471 12187507 chr2R 12190092 12190123 47 2620 116.5 75.0 95.8 0.5 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_47_12185001 chr2R_12185001 RAL-105 384 chr2R 12217575 12217603 chr2R 12217656 12217684 6 81 1.0 2.0 1.5 2.4 109 chr2R 12217575 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217684 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-105 385 chr2R 12272335 12272356 chr2R 12272407 12272438 5 80 1.5 1.0 1.2 2.3 103 chr2R 12272335 intron Cam + chr2R 12272386 intron Cam + chr2R 12272438 intron Cam + chr2R_5_12270001 chr2R_12270001 RAL-105 386 chr2R 12385344 12385379 chr2R 12385425 12385460 10 80 0.5 3.0 1.8 3.6 116 chr2R 12385344 intergenic not near genes chr2R 12385402 intergenic not near genes chr2R 12385460 intergenic not near genes chr2R_10_12385001 chr2R_12385001 RAL-105 387 chr2R 12501693 12501725 chr2R 12503855 12503887 Rt1c 7 2159 3.5 6.0 4.8 1.2 2194 chr2R 12501693 intron fdl - chr2R 12502790 intron fdl - chr2R 12503887 intron fdl - chr2R_7_12500001 chr2R_12500001 RAL-105 388 chr2R 12540474 12540495 chr2R 12540557 12540578 4 83 2.5 2.0 2.2 1.2 104 chr2R 12540474 intron fra + chr2R 12540526 intron fra + chr2R 12540578 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-105 389 chr2R 12622284 12622296 chr2R 12622361 12622374 4 77 1.0 1.5 1.2 1.8 90 chr2R 12622284 3` UTR Galphaq + chr2R 12622329 3` UTR Galphaq + chr2R 12622374 3` UTR Galphaq + chr2R_4_12620001 chr2R_12620001 RAL-105 390 chr2R 12789293 12789326 chr2R 12797656 12797688 roo 6 8359 0.0 3.5 1.8 2.1 8395 chr2R 12789293 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797688 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-105 391 chr2R 12973864 12973885 chr2R 12973951 12973969 5 86 3.5 0.0 1.8 1.8 105 chr2R 12973864 intron Psc - chr2R 12973916 intron Psc - chr2R 12973969 intron Psc - chr2R_5_12970001 chr2R_12970001 RAL-105 392 chr2R 13136843 13136869 chr2R 13141640 13141667 Doc 12 4798 4.5 5.5 5.0 2.0 4824 chr2R 13136843 exon Cap-G + chr2R 13139255 intron Cap-G + chr2R 13141667 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-105 393 chr2R 13356510 13356532 chr2R 13356595 13356617 11 85 2.5 4.0 3.2 2.6 107 chr2R 13356510 intergenic not near genes chr2R 13356564 intergenic not near genes chr2R 13356617 intergenic not near genes chr2R_11_13355001 chr2R_13355001 RAL-105 394 chr2R 13431488 13431510 chr2R 13431567 13431589 5 79 0.5 1.0 0.8 2.8 101 chr2R 13431488 intron CG42321 - chr2R 13431538 intron CG42321 - chr2R 13431589 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-105 395 chr2R 13439108 13439230 chr2R 13439223 13439306 4 117 0.0 0.0 0.0 4.0 198 chr2R 13439108 intergenic CG42321 -,cnn - chr2R 13439207 intergenic cnn -,CG42321 - chr2R 13439306 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-105 396 chr2R 13523279 13523287 chr2R 13526234 13526243 4 2955 10.0 0.0 5.0 0.7 2964 chr2R 13523279 intron,exon Vmat -,CG13331 + chr2R 13524761 intron Vmat - chr2R 13526243 intron,3` UTR Vmat -,CG13332 + chr2R_4_13520001 chr2R_13520001 RAL-105 397 chr2R 13573787 13573819 chr2R 13573956 13573989 13 168 5.0 5.0 5.0 2.2 202 chr2R 13573787 exon CG42808 - chr2R 13573888 exon CG42808 - chr2R 13573989 exon CG42808 - chr2R_13_13570001 chr2R_13570001 RAL-105 398 chr2R 13580499 13580532 chr2R 13580849 13580881 jockey 9 349 1.0 6.5 3.8 1.9 382 chr2R 13580499 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 RAL-105 399 chr2R 13648720 13648744 chr2R 13649151 13649151 4 422 3.0 1.5 2.2 1.2 431 chr2R 13648720 intron fas + chr2R 13648936 intron fas + chr2R 13649151 intron fas + chr2R_4_13645001 chr2R_13645001 RAL-105 400 chr2R 13759500 13759532 chr2R 13759633 13759665 9 132 1.5 2.0 1.8 3.2 165 chr2R 13759500 intergenic not near genes chr2R 13759582 intergenic not near genes chr2R 13759665 intergenic not near genes chr2R_9_13755001 chr2R_13755001 RAL-105 401 chr2R 13888765 13888786 chr2R 13888842 13888863 5 77 3.5 0.0 1.8 1.8 98 chr2R 13888765 intron shot - chr2R 13888814 intron shot - chr2R 13888863 intron shot - chr2R_5_13885001 chr2R_13885001 RAL-105 402 chr2R 13925849 13925868 chr2R 13926025 13926044 5 176 1.0 1.5 1.2 2.3 195 chr2R 13925849 intron shot - chr2R 13925946 intron shot - chr2R 13926044 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-105 403 chr2R 13958264 13958294 chr2R 13958377 13958407 8 111 1.5 2.0 1.8 2.9 143 chr2R 13958264 intergenic AGO1 -,Rpn13 - chr2R 13958336 intergenic Rpn13 -,AGO1 - chr2R 13958407 intergenic Rpn13 -,AGO1 - chr2R_8_13955001 chr2R_13955001 RAL-105 404 chr2R 13965771 13965781 chr2R 13966191 13966201 5 420 1.5 7.5 4.5 0.9 430 chr2R 13965771 intron Cp1 + chr2R 13965986 intron Cp1 + chr2R 13966201 intron Cp1 + chr2R_5_13965001 chr2R_13965001 RAL-105 405 chr2R 14277586 14277610 chr2R 14277668 14277692 4 82 2.0 3.5 2.8 1.1 106 chr2R 14277586 5` UTR Ih + chr2R 14277639 5` UTR Ih + chr2R 14277692 5` UTR Ih + chr2R_4_14275001 chr2R_14275001 RAL-105 406 chr2R 14352699 14352718 chr2R 14352793 14352806 5 92 3.5 3.0 3.2 1.2 107 chr2R 14352699 exon CG8613 + chr2R 14352752 intron CG8613 + chr2R 14352806 intron CG8613 + chr2R_5_14350001 chr2R_14350001 RAL-105 407 chr2R 14357568 14357758 chr2R 14357654 14357898 5 118 0.0 0.0 0.0 5.0 330 chr2R 14357568 intergenic CG8617 -,Arc1 - chr2R 14357733 intergenic Arc1 -,CG8617 - chr2R 14357898 intergenic Arc1 - chr2R_5_14355001 chr2R_14355001 RAL-105 408 chr2R 14373502 14373532 chr2R 14373589 14373607 10 85 4.5 6.5 5.5 1.5 105 chr2R 14373502 exon Obp50d + chr2R 14373554 exon Obp50d + chr2R 14373607 exon Obp50d + chr2R_10_14370001 chr2R_14370001 RAL-105 409 chr2R 14392594 14392609 chr2R 14392680 14392690 5 85 1.5 3.0 2.2 1.6 96 chr2R 14392594 intergenic CG10104 + chr2R 14392642 intergenic CG10104 + chr2R 14392690 intergenic CG10104 + chr2R_5_14390001 chr2R_14390001 RAL-105 410 chr2R 14525893 14525923 chr2R 14525976 14526006 5 83 1.5 2.5 2.0 1.7 113 chr2R 14525893 intergenic ttv + chr2R 14525950 intergenic ttv + chr2R 14526006 intergenic ttv + chr2R_5_14525001 chr2R_14525001 RAL-105 411 chr2R 14538965 14538985 chr2R 14539034 14539061 4 74 4.0 6.0 5.0 0.7 96 chr2R 14538965 intron ttv + chr2R 14539013 intron ttv + chr2R 14539061 intron ttv + chr2R_4_14535001 chr2R_14535001 RAL-105 412 chr2R 14653906 14653927 chr2R 14654006 14654027 8 99 2.0 2.5 2.2 2.5 121 chr2R 14653906 intergenic not near genes chr2R 14653966 intergenic not near genes chr2R 14654027 intergenic not near genes chr2R_8_14650001 chr2R_14650001 RAL-105 413 chr2R 14729957 14729976 chr2R 14730041 14730060 5 84 1.0 0.5 0.8 2.8 103 chr2R 14729957 intergenic not near genes chr2R 14730008 intergenic not near genes chr2R 14730060 intergenic not near genes chr2R_5_14730001 chr2R_14730001 RAL-105 414 chr2R 14797603 14797627 chr2R 14797698 14797719 4 94 0.0 0.0 0.0 4.0 116 chr2R 14797603 intron kn - chr2R 14797661 intron kn - chr2R 14797719 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-105 415 chr2R 14811341 14811372 chr2R 14811417 14811448 4 74 1.0 0.0 0.5 2.7 107 chr2R 14811341 intergenic not near genes chr2R 14811394 intergenic not near genes chr2R 14811448 intergenic not near genes chr2R_4_14810001 chr2R_14810001 RAL-105 416 chr2R 14816105 14816136 chr2R 14816200 14816226 6 94 1.0 3.5 2.2 1.9 121 chr2R 14816105 intergenic not near genes chr2R 14816166 intergenic not near genes chr2R 14816226 intergenic not near genes chr2R_6_14815001 chr2R_14815001 RAL-105 417 chr2R 14911702 14911728 chr2R 14911825 14911847 4 122 1.0 2.5 1.8 1.4 145 chr2R 14911702 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911847 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-105 418 chr2R 14922142 14922174 chr2R 14922217 14922250 5 76 3.5 1.5 2.5 1.4 108 chr2R 14922142 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_5_14920001 chr2R_14920001 RAL-105 419 chr2R 15015456 15015488 chr2R 15022879 15022912 mdg1 6 7424 1.5 1.5 1.5 2.4 7456 chr2R 15015456 intron hbs + chr2R 15019184 intron hbs + chr2R 15022912 intron hbs + chr2R_6_15015001 chr2R_15015001 RAL-105 420 chr2R 15084995 15085006 chr2R 15092040 15092055 297 4 7048 3.0 2.0 2.5 1.1 7060 chr2R 15084995 intergenic not near genes chr2R 15088525 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-105 421 chr2R 15105187 15105203 chr2R 15105277 15105278 4 87 4.0 1.5 2.8 1.1 91 chr2R 15105187 intergenic not near genes chr2R 15105232 intergenic not near genes chr2R 15105278 intergenic not near genes chr2R_4_15105001 chr2R_15105001 RAL-105 422 chr2R 15117448 15117470 chr2R 15117542 15117557 6 92 1.0 5.0 3.0 1.5 109 chr2R 15117448 intron chn + chr2R 15117502 intron chn + chr2R 15117557 intron chn + chr2R_6_15115001 chr2R_15115001 RAL-105 423 chr2R 15119337 15119349 chr2R 15127797 15127830 Tirant 6 8476 2.5 4.0 3.2 1.4 8493 chr2R 15119337 intron chn + chr2R 15123584 intron chn + chr2R 15127830 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-105 424 chr2R 15134304 15134325 chr2R 15134378 15134402 5 75 0.0 7.0 3.5 1.1 98 chr2R 15134304 intron chn + chr2R 15134353 intron chn + chr2R 15134402 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-105 425 chr2R 15169484 15169494 chr2R 15169562 15169574 6 80 0.0 5.0 2.5 1.7 90 chr2R 15169484 intron igl + chr2R 15169529 intron igl + chr2R 15169574 intron igl + chr2R_6_15165001 chr2R_15165001 RAL-105 426 chr2R 15395856 15395889 chr2R 15395961 15395994 9 104 2.0 3.5 2.8 2.4 138 chr2R 15395856 intergenic not near genes chr2R 15395925 intergenic not near genes chr2R 15395994 intergenic not near genes chr2R_9_15395001 chr2R_15395001 RAL-105 427 chr2R 15621177 15621194 chr2R 15621401 15621424 4 224 1.5 3.0 2.2 1.2 247 chr2R 15621177 intron CG42524 + chr2R 15621300 intron CG42524 + chr2R 15621424 intron CG42524 + chr2R_4_15620001 chr2R_15620001 RAL-105 428 chr2R 15685362 15685396 chr2R 15685465 15685499 5 103 1.5 2.0 1.8 1.8 137 chr2R 15685362 intron,exon Ranbp11 +,CG30082 - chr2R 15685430 intron,intron Ranbp11 +,CG30082 - chr2R 15685499 intron,intron Ranbp11 +,CG30082 - chr2R_5_15685001 chr2R_15685001 RAL-105 429 chr2R 15755222 15755228 chr2R 15755305 15755311 4 83 3.0 2.0 2.5 1.1 89 chr2R 15755222 intron CG30089 + chr2R 15755266 intron CG30089 + chr2R 15755311 intron CG30089 + chr2R_4_15755001 chr2R_15755001 RAL-105 430 chr2R 15755230 15755253 chr2R 15755299 15755336 6 76 2.5 1.0 1.8 2.1 106 chr2R 15755230 intron CG30089 + chr2R 15755283 intron CG30089 + chr2R 15755336 intron CG30089 + chr2R_6_15755001 chr2R_15755001 RAL-105 431 chr2R 15869334 15869358 chr2R 15869414 15869417 4 75 0.5 0.0 0.2 3.3 83 chr2R 15869334 intergenic sli -,Rif1 - chr2R 15869376 intergenic sli -,Rif1 - chr2R 15869417 intergenic sli -,Rif1 - chr2R_4_15865001 chr2R_15865001 RAL-105 432 chr2R 16537111 16537128 chr2R 16537192 16537209 4 80 1.0 3.5 2.2 1.2 98 chr2R 16537111 intergenic loopin-1 + chr2R 16537160 intergenic loopin-1 + chr2R 16537209 intergenic loopin-1 + chr2R_4_16535001 chr2R_16535001 RAL-105 433 chr2R 16737136 16737166 chr2R 16737236 16737266 13 99 3.5 3.5 3.5 2.9 130 chr2R 16737136 3` UTR CG43104 - chr2R 16737201 3` UTR CG43104 - chr2R 16737266 exon CG43104 - chr2R_13_16735001 chr2R_16735001 RAL-105 434 chr2R 16740884 16740921 chr2R 16740978 16741015 17 90 3.5 4.0 3.8 3.5 131 chr2R 16740884 intergenic not near genes chr2R 16740950 intergenic not near genes chr2R 16741015 intergenic not near genes chr2R_17_16740001 chr2R_16740001 RAL-105 435 chr2R 17147245 17147271 chr2R 17152276 17152302 jockey 6 5031 0.5 5.0 2.8 1.6 5057 chr2R 17147245 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152302 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-105 436 chr2R 17210086 17210108 chr2R 17210167 17210189 4 76 2.5 0.5 1.5 1.6 103 chr2R 17210086 intergenic not near genes chr2R 17210138 intergenic not near genes chr2R 17210189 intergenic not near genes chr2R_4_17210001 chr2R_17210001 RAL-105 437 chr2R 17236510 17236528 chr2R 17241714 17241732 copia 8 5204 2.0 1.5 1.8 2.9 5222 chr2R 17236510 intron mbl + chr2R 17239121 intron mbl + chr2R 17241732 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-105 438 chr2R 17257384 17257417 chr2R 17257471 17257502 8 87 3.0 3.0 3.0 2.0 118 chr2R 17257384 intron,exon mbl +,CG43108 - chr2R 17257443 intron,exon mbl +,CG43108 - chr2R 17257502 intron,exon mbl +,CG43108 - chr2R_8_17255001 chr2R_17255001 RAL-105 439 chr2R 17389271 17389304 chr2R 17389362 17389395 16 89 1.5 5.0 3.2 3.8 124 chr2R 17389271 intergenic CR44344 - chr2R 17389333 intergenic CR44344 - chr2R 17389395 intergenic CR44344 - chr2R_16_17385001 chr2R_17385001 RAL-105 440 chr2R 17459009 17459034 chr2R 17459094 17459119 5 85 0.5 1.5 1.0 2.5 110 chr2R 17459009 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459119 intron CG14478 + chr2R_5_17455001 chr2R_17455001 RAL-105 441 chr2R 17655200 17655234 chr2R 17655277 17655311 13 75 2.0 4.0 3.0 3.2 111 chr2R 17655200 intron CCHa1-R - chr2R 17655256 intron CCHa1-R - chr2R 17655311 intron CCHa1-R - chr2R_13_17655001 chr2R_17655001 RAL-105 442 chr2R 17784028 17784048 chr2R 17784269 17784289 pogo 6 241 2.5 4.5 3.5 1.3 261 chr2R 17784028 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784289 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-105 443 chr2R 17846788 17846808 chr2R 17846872 17846892 4 84 3.0 5.0 4.0 0.8 104 chr2R 17846788 intron,5` UTR olf186-F +,olf186-M + chr2R 17846840 intron,5` UTR olf186-F +,olf186-M + chr2R 17846892 intron,5` UTR olf186-F +,olf186-M + chr2R_4_17845001 chr2R_17845001 RAL-105 444 chr2R 17900857 17900889 chr2R 17900980 17901012 4 122 2.5 1.0 1.8 1.4 155 chr2R 17900857 intron Elk + chr2R 17900934 intron Elk + chr2R 17901012 intron Elk + chr2R_4_17900001 chr2R_17900001 RAL-105 445 chr2R 18308289 18308317 chr2R 18308395 18308418 8 105 3.5 1.5 2.5 2.3 129 chr2R 18308289 intron sbb - chr2R 18308354 intron sbb - chr2R 18308418 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-105 446 chr2R 18358400 18358418 chr2R 18372612 18372630 roo 4 14212 2.5 2.5 2.5 1.1 14230 chr2R 18358400 intergenic not near genes chr2R 18365515 intergenic not near genes chr2R 18372630 intergenic not near genes chr2R_4_18365001 chr2R_18365001 RAL-105 447 chr2R 18412531 18412558 chr2R 18412611 18412638 5 80 3.5 1.5 2.5 1.4 107 chr2R 18412531 intron,intron imd -,Dp1 + chr2R 18412584 intron,intron imd -,Dp1 + chr2R 18412638 intron,intron imd -,Dp1 + chr2R_5_18410001 chr2R_18410001 RAL-105 448 chr2R 18479052 18479086 chr2R 18479131 18479165 6 79 2.5 1.0 1.8 2.1 113 chr2R 18479052 intron CG30116 - chr2R 18479108 intron CG30116 - chr2R 18479165 intron CG30116 - chr2R_6_18475001 chr2R_18475001 RAL-105 449 chr2R 18483032 18483051 chr2R 18483271 18483290 8 238 0.0 3.5 1.8 2.9 258 chr2R 18483032 intron CG30116 - chr2R 18483161 intron CG30116 - chr2R 18483290 intron CG30116 - chr2R_8_18480001 chr2R_18480001 RAL-105 450 chr2R 18575811 18575817 chr2R 18581998 18582004 3S18 4 6188 5.0 3.5 4.2 0.8 6193 chr2R 18575811 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582004 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-105 451 chr2R 18575818 18575827 chr2R 18581990 18582015 3S18 5 6184 3.5 3.0 3.2 1.2 6197 chr2R 18575818 intron GEFmeso - chr2R 18578916 intron GEFmeso - chr2R 18582015 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-105 452 chr2R 18590865 18590901 chr2R 18600017 18600053 roo 15 9151 2.5 3.0 2.8 3.9 9188 chr2R 18590865 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_15_18595001 chr2R_18595001 RAL-105 453 chr2R 18646418 18646432 chr2R 18646562 18646576 4 144 1.0 2.5 1.8 1.4 158 chr2R 18646418 intron SP2637 - chr2R 18646497 intron SP2637 - chr2R 18646576 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-105 454 chr2R 18692900 18692920 chr2R 18692987 18693007 6 87 0.5 0.5 0.5 4.0 107 chr2R 18692900 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693007 intron Sik3 + chr2R_6_18690001 chr2R_18690001 RAL-105 455 chr2R 18713239 18713263 chr2R 18713316 18713340 7 77 1.5 1.5 1.5 2.8 101 chr2R 18713239 intergenic not near genes chr2R 18713290 intergenic not near genes chr2R 18713340 intergenic not near genes chr2R_7_18710001 chr2R_18710001 RAL-105 456 chr2R 18785918 18785949 chr2R 18785997 18786028 14 78 3.5 2.5 3.0 3.5 110 chr2R 18785918 intron CG15080 + chr2R 18785973 intron CG15080 + chr2R 18786028 intron CG15080 + chr2R_14_18785001 chr2R_18785001 RAL-105 457 chr2R 18862308 18862315 chr2R 18862395 18862402 5 87 0.0 0.0 0.0 5.0 94 chr2R 18862308 intergenic Jheh3 - chr2R 18862355 intergenic Jheh3 - chr2R 18862402 intergenic Jheh3 -,CG43069 + chr2R_5_18860001 chr2R_18860001 RAL-105 458 chr2R 19053409 19053424 chr2R 19053641 19053656 4 232 3.5 2.0 2.8 1.1 247 chr2R 19053409 intergenic not near genes chr2R 19053532 intergenic not near genes chr2R 19053656 intergenic not near genes chr2R_4_19050001 chr2R_19050001 RAL-105 459 chr2R 19234836 19234864 chr2R 19234918 19234946 8 81 3.0 1.0 2.0 2.7 110 chr2R 19234836 intron cora + chr2R 19234891 intron cora + chr2R 19234946 intron cora + chr2R_8_19230001 chr2R_19230001 RAL-105 460 chr2R 19331658 19331686 chr2R 19331899 19331927 7 241 0.5 0.0 0.2 5.8 269 chr2R 19331658 intron,intron Rgk1 -,CG34045 + chr2R 19331792 intron,intron Rgk1 -,CG34045 + chr2R 19331927 intron,intron Rgk1 -,CG34045 + chr2R_7_19330001 chr2R_19330001 RAL-105 461 chr2R 19364182 19364207 chr2R 19364257 19364287 4 79 0.0 2.0 1.0 2.0 105 chr2R 19364182 intron CG10051 + chr2R 19364234 intron CG10051 + chr2R 19364287 intron CG10051 + chr2R_4_19360001 chr2R_19360001 RAL-105 462 chr2R 19373687 19373716 chr2R 19373865 19373897 11 180 3.0 3.5 3.2 2.6 210 chr2R 19373687 5` UTR CG9416 - chr2R 19373792 intergenic CG9416 - chr2R 19373897 intergenic CG9416 - chr2R_11_19370001 chr2R_19370001 RAL-105 463 chr2R 19536465 19536495 chr2R 19536547 19536577 4 82 1.0 0.5 0.8 2.2 112 chr2R 19536465 intron sm - chr2R 19536521 intron sm - chr2R 19536577 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-105 464 chr2R 19695897 19695919 chr2R 19695983 19696005 5 86 0.0 1.5 0.8 2.8 108 chr2R 19695897 5` UTR CR44506 + chr2R 19695951 5` UTR CR44506 + chr2R 19696005 5` UTR CR44506 + chr2R_5_19695001 chr2R_19695001 RAL-105 465 chr2R 19714713 19714733 chr2R 19714789 19714809 5 76 0.5 0.5 0.5 3.3 96 chr2R 19714713 3` UTR CG8517 + chr2R 19714761 3` UTR CG8517 + chr2R 19714809 3` UTR CG8517 + chr2R_5_19710001 chr2R_19710001 RAL-105 466 chr2R 19715836 19715856 chr2R 19723325 19723345 blood 11 7488 3.0 4.5 3.8 2.3 7509 chr2R 19715836 intergenic not near genes chr2R 19719590 intergenic not near genes chr2R 19723345 intergenic not near genes chr2R_11_19715001 chr2R_19715001 RAL-105 467 chr2R 19776594 19776621 chr2R 19779917 19779944 jockey 7 3322 4.0 3.0 3.5 1.6 3350 chr2R 19776594 intergenic not near genes chr2R 19778269 intergenic not near genes chr2R 19779944 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-105 468 chr2R 19909490 19909504 chr2R 19909562 19909583 5 75 2.5 2.0 2.2 1.6 93 chr2R 19909490 intergenic CR44573 - chr2R 19909536 intergenic CR44573 - chr2R 19909583 intergenic CR44573 - chr2R_5_19905001 chr2R_19905001 RAL-105 469 chr2R 19914843 19914872 chr2R 19922255 19922284 mdg1 5 7412 2.5 1.0 1.8 1.8 7441 chr2R 19914843 intergenic not near genes chr2R 19918564 intergenic not near genes chr2R 19922284 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-105 470 chr2R 19953750 19953775 chr2R 19953828 19953853 7 78 2.0 2.0 2.0 2.3 103 chr2R 19953750 intergenic CG44622 + chr2R 19953802 5` UTR CG44622 + chr2R 19953853 5` UTR CG44622 + chr2R_7_19950001 chr2R_19950001 RAL-105 471 chr2R 19957432 19957440 chr2R 19962631 19962641 copia 4 5201 2.5 3.0 2.8 1.1 5209 chr2R 19957432 intergenic CG44623 + chr2R 19960036 intergenic not near genes chr2R 19962641 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-105 472 chr2R 20008189 20008204 chr2R 20008278 20008293 4 89 2.0 5.0 3.5 0.9 104 chr2R 20008189 intergenic not near genes chr2R 20008241 intergenic not near genes chr2R 20008293 intergenic not near genes chr2R_4_20005001 chr2R_20005001 RAL-105 473 chr2R 20037471 20037497 chr2R 20037550 20037557 11 75 0.5 2.0 1.2 5.0 86 chr2R 20037471 intergenic not near genes chr2R 20037514 intergenic not near genes chr2R 20037557 intergenic not near genes chr2R_11_20035001 chr2R_20035001 RAL-105 474 chr2R 20069244 20069274 chr2R 20071874 20071904 opus 6 2630 2.0 0.5 1.2 2.7 2660 chr2R 20069244 intergenic not near genes chr2R 20070574 intergenic not near genes chr2R 20071904 intergenic not near genes chr2R_6_20070001 chr2R_20070001 RAL-105 475 chr2R 20080604 20080621 chr2R 20080680 20080698 6 76 0.0 1.5 0.8 3.3 94 chr2R 20080604 intergenic not near genes chr2R 20080651 intergenic not near genes chr2R 20080698 intergenic not near genes chr2R_6_20080001 chr2R_20080001 RAL-105 476 chr2R 20227671 20227685 chr2R 20227770 20227784 7 98 4.5 2.0 3.2 1.7 113 chr2R 20227671 intergenic not near genes chr2R 20227728 intergenic not near genes chr2R 20227784 intergenic not near genes chr2R_7_20225001 chr2R_20225001 RAL-105 477 chr2R 20326761 20326793 chr2R 20326838 20326870 10 76 2.0 2.0 2.0 3.3 109 chr2R 20326761 5` UTR MED8 - chr2R 20326816 intergenic MED8 -,CG8929 + chr2R 20326870 intergenic MED8 -,CG8929 + chr2R_10_20325001 chr2R_20325001 RAL-105 478 chr2R 20342816 20342841 chr2R 20342897 20342922 10 80 1.0 1.5 1.2 4.5 106 chr2R 20342816 intergenic CG16739 + chr2R 20342869 intergenic CG16739 + chr2R 20342922 intergenic CG16739 + chr2R_10_20340001 chr2R_20340001 RAL-105 479 chr2R 20382337 20382359 chr2R 20382422 20382444 6 84 3.0 1.5 2.2 1.9 107 chr2R 20382337 intergenic not near genes chr2R 20382390 intergenic not near genes chr2R 20382444 intergenic not near genes chr2R_6_20380001 chr2R_20380001 RAL-105 480 chr2R 20490541 20490559 chr2R 20490620 20490635 4 78 2.0 3.5 2.8 1.1 94 chr2R 20490541 intergenic CR44643 - chr2R 20490588 intergenic CR44643 - chr2R 20490635 intergenic CR44643 - chr2R_4_20490001 chr2R_20490001 RAL-105 481 chr2R 20506217 20506243 chr2R 20506319 20506348 13 102 3.0 3.0 3.0 3.2 131 chr2R 20506217 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506282 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506348 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_13_20505001 chr2R_20505001 RAL-105 482 chr2R 20601718 20601742 chr2R 20601803 20601827 4 85 0.0 3.0 1.5 1.6 109 chr2R 20601718 intron bl + chr2R 20601772 intron bl + chr2R 20601827 intron bl + chr2R_4_20600001 chr2R_20600001 RAL-105 483 chr2R 20642489 20642493 chr2R 20642566 20642570 5 77 4.5 0.0 2.2 1.6 81 chr2R 20642489 3` UTR,3` UTR,3` UTR CG11110 +,CG33785 -,CG33786 - chr2R 20642530 3` UTR,3` UTR,3` UTR CG11110 +,CG33785 -,CG33786 - chr2R 20642570 3` UTR,3` UTR CG33785 -,CG33786 - chr2R_5_20640001 chr2R_20640001 RAL-105 484 chr2R 20739442 20739474 chr2R 20744210 20744241 F-element 9 4766 2.0 3.5 2.8 2.4 4799 chr2R 20739442 intron dpr + chr2R 20741842 intron dpr + chr2R 20744241 intron dpr + chr2R_9_20740001 chr2R_20740001 RAL-105 485 chr2R 20783311 20783331 chr2R 20788083 20788102 F-element 4 4772 1.0 4.0 2.5 1.1 4791 chr2R 20783311 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788102 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-105 486 chr2R 20834805 20834829 chr2R 20834920 20834944 10 115 2.5 2.0 2.2 3.1 139 chr2R 20834805 intron,intron insc -,sktl - chr2R 20834874 intron,intron insc -,sktl - chr2R 20834944 intron,intron insc -,sktl - chr2R_10_20830001 chr2R_20830001 RAL-105 487 chr2R 20916445 20916457 chr2R 20916576 20916592 4 134 5.5 2.0 3.8 0.8 147 chr2R 20916445 intergenic Rx + chr2R 20916518 intergenic Rx + chr2R 20916592 intergenic Rx + chr2R_4_20915001 chr2R_20915001 RAL-105 488 chr2R 21029776 21029783 chr2R 21029891 21029898 4 115 0.0 5.5 2.8 1.1 122 chr2R 21029776 3` UTR CR45148 - chr2R 21029837 intron CR45148 - chr2R 21029898 3` UTR CR45148 - chr2R_4_21025001 chr2R_21025001 RAL-105 489 chr2R 21043654 21043686 chr2R 21043739 21043793 6 103 3.0 0.0 1.5 2.4 139 chr2R 21043654 intergenic not near genes chr2R 21043724 intergenic not near genes chr2R 21043793 intergenic not near genes chr2R_6_21040001 chr2R_21040001 RAL-105 490 chr2R 21251823 21251848 chr2R 21252049 21252056 5 223 0.5 0.5 0.5 3.3 233 chr2R 21251823 intergenic not near genes chr2R 21251940 intergenic not near genes chr2R 21252056 intergenic not near genes chr2R_5_21250001 chr2R_21250001 RAL-105 491 chr2R 21379290 21379317 chr2R 21379407 21379423 4 114 2.5 1.5 2.0 1.3 133 chr2R 21379290 5` UTR cv-2 - chr2R 21379356 5` UTR cv-2 - chr2R 21379423 5` UTR cv-2 - chr2R_4_21375001 chr2R_21375001 RAL-105 492 chr2R 21469955 21469973 chr2R 21470028 21470060 4 82 0.0 1.0 0.5 2.7 105 chr2R 21469955 intron Sdc - chr2R 21470008 intron Sdc - chr2R 21470060 intron Sdc - chr2R_4_21470001 chr2R_21470001 RAL-105 493 chr2R 21534461 21534483 chr2R 21534554 21534576 5 89 7.0 7.0 7.0 0.6 115 chr2R 21534461 intron Egfr + chr2R 21534518 intron Egfr + chr2R 21534576 intron Egfr + chr2R_5_21530001 chr2R_21530001 RAL-105 494 chr2R 21546789 21546816 chr2R 21546869 21546869 8 77 2.0 3.5 2.8 2.1 80 chr2R 21546789 intron Egfr + chr2R 21546829 intron Egfr + chr2R 21546869 intron Egfr + chr2R_8_21545001 chr2R_21545001 RAL-105 495 chr2R 21566409 21566431 chr2R 21566508 21566526 9 98 5.0 1.5 3.2 2.1 117 chr2R 21566409 intron CG10440 - chr2R 21566468 intron CG10440 - chr2R 21566526 intron CG10440 - chr2R_9_21565001 chr2R_21565001 RAL-105 496 chr2R 21700166 21700182 chr2R 21700239 21700267 9 84 3.5 6.5 5.0 1.5 101 chr2R 21700166 intron HmgZ - chr2R 21700216 intron HmgZ - chr2R 21700267 intron HmgZ - chr2R_9_21700001 chr2R_21700001 RAL-105 497 chr2R 21753082 21753113 chr2R 21753567 21753598 roo 8 485 4.0 2.5 3.2 1.9 516 chr2R 21753082 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753598 intergenic not near genes chr2R_8_21750001 chr2R_21750001 RAL-105 498 chr2R 21857349 21857370 chr2R 21857438 21857461 6 89 1.0 3.5 2.2 1.9 112 chr2R 21857349 intergenic not near genes chr2R 21857405 intergenic not near genes chr2R 21857461 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-105 499 chr2R 21906277 21906302 chr2R 21906378 21906403 7 101 1.0 1.5 1.2 3.2 126 chr2R 21906277 intron Fili + chr2R 21906340 intron Fili + chr2R 21906403 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-105 500 chr2R 21919882 21919907 chr2R 21919960 21919995 7 86 3.5 1.0 2.2 2.2 113 chr2R 21919882 intron Fili + chr2R 21919938 intron Fili + chr2R 21919995 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-105 501 chr2R 22003092 22003122 chr2R 22003178 22003208 7 86 2.0 1.5 1.8 2.5 116 chr2R 22003092 intron CG34370 - chr2R 22003150 intron CG34370 - chr2R 22003208 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-105 502 chr2R 22072686 22072715 chr2R 22072771 22072790 8 84 1.5 2.5 2.0 2.7 104 chr2R 22072686 intron CG11474 - chr2R 22072738 intron CG11474 - chr2R 22072790 intron CG11474 - chr2R_8_22070001 chr2R_22070001 RAL-105 503 chr2R 22133202 22133210 chr2R 22133284 22133291 6 82 3.5 2.0 2.8 1.6 89 chr2R 22133202 intergenic not near genes chr2R 22133246 intergenic not near genes chr2R 22133291 intergenic not near genes chr2R_6_22130001 chr2R_22130001 RAL-105 504 chr2R 22292072 22292103 chr2R 22292159 22292190 15 86 6.0 2.5 4.2 2.9 118 chr2R 22292072 5` UTR CR43422 + chr2R 22292131 5` UTR CR43422 + chr2R 22292190 5` UTR CR43422 + chr2R_15_22290001 chr2R_22290001 RAL-105 505 chr2R 22349693 22349723 chr2R 22351473 22351507 jockey 6 1783 0.5 1.5 1.0 3.0 1814 chr2R 22349693 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-105 506 chr2R 22360381 22360403 chr2R 22360814 22360829 jockey 5 432 1.5 3.5 2.5 1.4 448 chr2R 22360381 intron Liprin-gamma - chr2R 22360605 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-105 507 chr2R 22377808 22377839 chr2R 22377893 22377919 7 84 0.5 1.0 0.8 3.9 111 chr2R 22377808 3` UTR Rtf1 + chr2R 22377864 3` UTR Rtf1 + chr2R 22377919 3` UTR Rtf1 + chr2R_7_22375001 chr2R_22375001 RAL-105 508 chr2R 22439720 22439742 chr2R 22439812 22439834 4 92 4.0 4.5 4.2 0.8 114 chr2R 22439720 intergenic not near genes chr2R 22439777 intergenic not near genes chr2R 22439834 intergenic not near genes chr2R_4_22435001 chr2R_22435001 RAL-105 509 chr2R 22525752 22525781 chr2R 22529306 22529336 jockey 6 3555 2.5 4.5 3.5 1.3 3584 chr2R 22525752 intron px - chr2R 22527544 intron px - chr2R 22529336 intron px - chr2R_6_22525001 chr2R_22525001 RAL-105 510 chr2R 22679753 22679774 chr2R 22679827 22679839 11 73 6.5 1.0 3.8 2.3 86 chr2R 22679753 intergenic not near genes chr2R 22679796 intergenic not near genes chr2R 22679839 intergenic not near genes chr2R_11_22675001 chr2R_22675001 RAL-105 511 chr2R 22679776 22679784 chr2R 22679824 22679861 5 62 3.5 1.5 2.5 1.4 85 chr2R 22679776 intergenic not near genes chr2R 22679818 intergenic not near genes chr2R 22679861 intergenic not near genes chr2R_5_22675001 chr2R_22675001 RAL-105 512 chr2R 22774961 22774993 chr2R 22775379 22775412 jockey 6 419 3.5 0.0 1.8 2.1 451 chr2R 22774961 intron CG42260 - chr2R 22775186 intron CG42260 - chr2R 22775412 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-105 513 chr2R 22843034 22843053 chr2R 22844996 22845015 flea 5 1962 1.0 3.5 2.2 1.6 1981 chr2R 22843034 intergenic CG9826 + chr2R 22844024 intergenic not near genes chr2R 22845015 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-105 514 chr2R 22951714 22951858 chr2R 22951854 22951944 5 129 0.0 0.0 0.0 5.0 230 chr2R 22951714 3` UTR CR32835 - chr2R 22951829 3` UTR CR32835 - chr2R 22951944 intron CR32835 - chr2R_5_22950001 chr2R_22950001 RAL-105 515 chr2R 22968139 22968163 chr2R 22968228 22968252 8 89 0.5 3.5 2.0 2.7 113 chr2R 22968139 intergenic not near genes chr2R 22968196 intergenic not near genes chr2R 22968252 intergenic not near genes chr2R_8_22965001 chr2R_22965001 RAL-105 516 chr2R 22991632 22991659 chr2R 22991724 22991751 9 91 1.0 3.0 2.0 3.0 119 chr2R 22991632 intron twi + chr2R 22991692 intron twi + chr2R 22991751 intron twi + chr2R_9_22990001 chr2R_22990001 RAL-105 517 chr2R 23052653 23052685 chr2R 23052729 23052761 5 75 1.0 1.0 1.0 2.5 108 chr2R 23052653 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052761 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-105 518 chr2R 23061753 23061786 chr2R 23061829 23061862 5 75 0.5 2.5 1.5 2.0 109 chr2R 23061753 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061862 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-105 519 chr2R 23175046 23175064 chr2R 23175122 23175141 4 77 4.0 4.5 4.2 0.8 95 chr2R 23175046 intron CG34371 - chr2R 23175094 intron CG34371 - chr2R 23175141 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-105 520 chr2R 23181890 23181924 chr2R 23182306 23182340 6 416 3.5 2.5 3.0 1.5 450 chr2R 23181890 intron CG34371 - chr2R 23182115 intron CG34371 - chr2R 23182340 intron CG34371 - chr2R_6_23180001 chr2R_23180001 RAL-105 521 chr2R 23294305 23294319 chr2R 23294552 23294566 4 247 1.5 3.5 2.5 1.1 261 chr2R 23294305 intergenic not near genes chr2R 23294436 intergenic not near genes chr2R 23294566 intergenic not near genes chr2R_4_23290001 chr2R_23290001 RAL-105 522 chr2R 23356281 23356307 chr2R 23356370 23356396 10 88 2.5 1.5 2.0 3.3 115 chr2R 23356281 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356396 3` UTR,3` UTR Rpi +,CG3500 - chr2R_10_23355001 chr2R_23355001 RAL-105 523 chr2R 23423742 23423774 chr2R 23423899 23423932 7 158 0.0 3.0 1.5 2.8 190 chr2R 23423742 intron CG9815 - chr2R 23423837 intron CG9815 - chr2R 23423932 intron CG9815 - chr2R_7_23420001 chr2R_23420001 RAL-105 524 chr2R 23467566 23467582 chr2R 23467916 23467917 7 348 2.5 2.0 2.2 2.2 351 chr2R 23467566 intron CG43795 + chr2R 23467742 intron CG43795 + chr2R 23467917 intron CG43795 + chr2R_7_23465001 chr2R_23465001 RAL-105 525 chr2R 23607037 23607184 chr2R 23607118 23607277 9 83 2.0 1.0 1.5 3.6 240 chr2R 23607037 intron CG17664 - chr2R 23607157 intron CG17664 - chr2R 23607277 intron CG17664 - chr2R_9_23605001 chr2R_23605001 RAL-105 526 chr2R 23784485 23784500 chr2R 23784563 23784577 5 78 2.5 4.0 3.2 1.2 92 chr2R 23784485 intron CG9850 - chr2R 23784531 intron CG9850 - chr2R 23784577 intron CG9850 - chr2R_5_23780001 chr2R_23780001 RAL-105 527 chr2R 23914320 23914330 chr2R 23921943 23921954 412 5 7623 1.5 5.0 3.2 1.2 7634 chr2R 23914320 exon kcc + chr2R 23918137 intron kcc + chr2R 23921954 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-105 528 chr2R 23994154 23994168 chr2R 23994228 23994244 9 75 2.0 3.0 2.5 2.6 90 chr2R 23994154 intron CG3860 - chr2R 23994199 intron CG3860 - chr2R 23994244 intron CG3860 - chr2R_9_23990001 chr2R_23990001 RAL-105 529 chr2R 24031380 24031407 chr2R 24031464 24031489 5 84 3.0 0.5 1.8 1.8 109 chr2R 24031380 5` UTR CG30172 - chr2R 24031434 intergenic CG30172 -,Chi - chr2R 24031489 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-105 530 chr2R 24147068 24147097 chr2R 24154646 24154675 412 10 7577 4.5 3.5 4.0 2.0 7607 chr2R 24147068 intron Dat + chr2R 24150872 intron Dat + chr2R 24154675 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-105 531 chr2R 24243744 24243752 chr2R 24243846 24243854 4 102 2.0 1.5 1.8 1.4 110 chr2R 24243744 intron nord + chr2R 24243799 intron nord + chr2R 24243854 intron nord + chr2R_4_24240001 chr2R_24240001 RAL-105 532 chr2R 24243758 24243771 chr2R 24243845 24243869 6 99 1.5 1.5 1.5 2.4 111 chr2R 24243758 intron nord + chr2R 24243814 intron nord + chr2R 24243869 intron nord + chr2R_6_24240001 chr2R_24240001 RAL-105 533 chr2R 24291946 24291980 chr2R 24292079 24292113 12 133 2.5 3.0 2.8 3.2 167 chr2R 24291946 intergenic not near genes chr2R 24292030 intergenic not near genes chr2R 24292113 intergenic not near genes chr2R_12_24290001 chr2R_24290001 RAL-105 534 chr2R 24353436 24353462 chr2R 24361798 24361824 roo 9 8362 1.0 3.5 2.2 2.8 8388 chr2R 24353436 intron,intron bs +,CR44811 - chr2R 24357630 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_9_24355001 chr2R_24355001 RAL-105 535 chr2R 24383831 24383858 chr2R 24383910 24383939 5 81 0.5 3.5 2.0 1.7 108 chr2R 24383831 intron mAChR-A - chr2R 24383885 intron mAChR-A - chr2R 24383939 exon mAChR-A - chr2R_5_24380001 chr2R_24380001 RAL-105 536 chr2R 24430930 24430950 chr2R 24431018 24431037 7 87 0.0 3.0 1.5 2.8 107 chr2R 24430930 intergenic CG15873 -,Pgam5-2 - chr2R 24430984 intergenic CG15873 -,Pgam5-2 - chr2R 24431037 intergenic Pgam5-2 -,CG15873 - chr2R_7_24430001 chr2R_24430001 RAL-105 537 chr2R 24590110 24590145 chr2R 24590202 24590237 17 91 3.0 2.5 2.8 4.5 127 chr2R 24590110 intron pio + chr2R 24590174 intron pio + chr2R 24590237 intron pio + chr2R_17_24590001 chr2R_24590001 RAL-105 538 chr2R 24647601 24647614 chr2R 24655158 24655171 412 5 7557 4.0 4.5 4.2 1.0 7570 chr2R 24647601 intergenic not near genes chr2R 24651386 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-105 539 chr2R 24688961 24688971 chr2R 24689044 24689053 4 83 1.0 2.0 1.5 1.6 92 chr2R 24688961 intergenic not near genes chr2R 24689007 intergenic not near genes chr2R 24689053 intergenic not near genes chr2R_4_24685001 chr2R_24685001 RAL-105 540 chr2R 24727884 24727917 chr2R 24735392 24735425 mdg1 8 7508 4.0 1.5 2.8 2.1 7541 chr2R 24727884 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-105 541 chr2R 24763624 24763644 chr2R 24765596 24765620 G2 10 1975 4.5 10.0 7.2 1.2 1996 chr2R 24763624 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-105 542 chr2R 24805716 24805750 chr2R 24805805 24805839 12 89 2.5 4.0 3.2 2.9 123 chr2R 24805716 intergenic not near genes chr2R 24805778 intergenic not near genes chr2R 24805839 intergenic not near genes chr2R_12_24805001 chr2R_24805001 RAL-105 543 chr2R 24859843 24859858 chr2R 24859929 24859943 4 86 3.5 2.0 2.8 1.1 100 chr2R 24859843 5` UTR CR44829 + chr2R 24859893 5` UTR CR44829 + chr2R 24859943 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-105 544 chr2R 24884060 24884064 chr2R 24884141 24884146 4 82 2.5 1.0 1.8 1.4 86 chr2R 24884060 intron NKAIN + chr2R 24884103 intron NKAIN + chr2R 24884146 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-105 545 chr2R 25004893 25004924 chr2R 25004971 25005002 8 77 0.5 2.0 1.2 3.6 109 chr2R 25004893 intron zip - chr2R 25004948 intron zip - chr2R 25005002 intron zip - chr2R_8_25000001 chr2R_25000001 RAL-105 546 chr2R 25014551 25014571 chr2R 25014627 25014647 5 76 3.5 1.5 2.5 1.4 96 chr2R 25014551 intron uzip + chr2R 25014599 intron uzip + chr2R 25014647 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-105 547 chr2R 25018340 25018375 chr2R 25018441 25018476 12 100 3.5 4.0 3.8 2.5 136 chr2R 25018340 intron uzip + chr2R 25018408 intron uzip + chr2R 25018476 intron uzip + chr2R_12_25015001 chr2R_25015001 RAL-105 548 chr2R 25101278 25101298 chr2R 25101380 25101400 6 100 2.5 2.0 2.2 1.9 122 chr2R 25101278 intron lov - chr2R 25101339 intron lov - chr2R 25101400 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-105 549 chr2R 25253446 25253473 chr2R 25253522 25253549 6 76 2.5 0.5 1.5 2.4 103 chr2R 25253446 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253549 intron,intron CG9380 -,CG30428 + chr2R_6_25250001 chr2R_25250001 RAL-105 550 chr3L 33166 33193 chr3L 33377 33404 7 209 1.5 1.5 1.5 2.8 238 chr3L 33166 intergenic not near genes chr3L 33285 intergenic not near genes chr3L 33404 intergenic not near genes chr3L_7_30001 chr3L_30001 RAL-105 551 chr3L 68989 69016 chr3L 69076 69103 9 87 2.5 2.5 2.5 2.6 114 chr3L 68989 3` UTR Lsp1gamma + chr3L 69046 intergenic Lsp1gamma +,CR44510 + chr3L 69103 intergenic CR44510 +,Lsp1gamma + chr3L_9_65001 chr3L_65001 RAL-105 552 chr3L 71935 71963 chr3L 72018 72046 9 83 1.5 1.0 1.2 4.1 111 chr3L 71935 intergenic CR43988 - chr3L 71990 intergenic CR43988 - chr3L 72046 intergenic CR43988 - chr3L_9_70001 chr3L_70001 RAL-105 553 chr3L 110218 110230 chr3L 119385 119397 roo 4 9167 1.0 1.0 1.0 2.0 9179 chr3L 110218 intergenic not near genes chr3L 114808 intergenic not near genes chr3L 119397 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-105 554 chr3L 122117 122125 chr3L 122197 122205 4 80 3.0 2.0 2.5 1.1 88 chr3L 122117 intergenic not near genes chr3L 122161 intergenic not near genes chr3L 122205 intergenic not near genes chr3L_4_120001 chr3L_120001 RAL-105 555 chr3L 283662 283690 chr3L 283752 283780 10 89 0.0 2.5 1.2 4.5 118 chr3L 283662 intron RhoGEF3 + chr3L 283721 intron RhoGEF3 + chr3L 283780 intron RhoGEF3 + chr3L_10_280001 chr3L_280001 RAL-105 556 chr3L 376136 376152 chr3L 376215 376229 6 78 0.5 1.5 1.0 3.0 93 chr3L 376136 intron trh - chr3L 376182 intron trh - chr3L 376229 intron trh - chr3L_6_375001 chr3L_375001 RAL-105 557 chr3L 402688 402717 chr3L 409741 409770 297 7 7049 5.0 1.5 3.2 1.7 7082 chr3L 402688 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_7_405001 chr3L_405001 RAL-105 558 chr3L 415966 416162 chr3L 416050 416249 16 85 3.5 2.0 2.8 4.2 283 chr3L 415966 intergenic not near genes chr3L 416108 intergenic not near genes chr3L 416249 intergenic not near genes chr3L_16_415001 chr3L_415001 RAL-105 559 chr3L 437139 437153 chr3L 437254 437281 11 124 3.5 4.5 4.0 2.2 142 chr3L 437139 intron klar - chr3L 437210 intron klar - chr3L 437281 intron klar - chr3L_11_435001 chr3L_435001 RAL-105 560 chr3L 438854 438876 chr3L 438934 438956 5 80 2.0 1.5 1.8 1.8 102 chr3L 438854 intron klar - chr3L 438905 intron klar - chr3L 438956 intron klar - chr3L_5_435001 chr3L_435001 RAL-105 561 chr3L 459987 460009 chr3L 460064 460085 6 77 3.0 2.5 2.8 1.6 98 chr3L 459987 intron klar - chr3L 460036 intron klar - chr3L 460085 intron klar - chr3L_6_460001 chr3L_460001 RAL-105 562 chr3L 467739 467770 chr3L 467825 467856 16 86 6.0 3.0 4.5 2.9 117 chr3L 467739 intron klar - chr3L 467798 intron klar - chr3L 467856 intron klar - chr3L_16_465001 chr3L_465001 RAL-105 563 chr3L 514986 514996 chr3L 515093 515105 5 109 1.5 2.0 1.8 1.8 119 chr3L 514986 intron klar - chr3L 515046 intron klar - chr3L 515105 intron klar - chr3L_5_515001 chr3L_515001 RAL-105 564 chr3L 556081 556098 chr3L 556393 556410 5 312 3.5 2.0 2.8 1.3 329 chr3L 556081 intron hipk + chr3L 556246 intron hipk + chr3L 556410 intron hipk + chr3L_5_555001 chr3L_555001 RAL-105 565 chr3L 651393 651417 chr3L 651481 651505 7 88 0.5 2.0 1.2 3.2 112 chr3L 651393 intergenic Gale +,CG3402 - chr3L 651449 intergenic CG3402 -,Gale + chr3L 651505 intergenic CG3402 -,Gale + chr3L_7_650001 chr3L_650001 RAL-105 566 chr3L 705898 705926 chr3L 705994 706022 5 96 0.0 2.0 1.0 2.5 124 chr3L 705898 intergenic CG13895 -,CR44514 + chr3L 705960 3` UTR CG13895 - chr3L 706022 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-105 567 chr3L 789918 789933 chr3L 790403 790418 roo 6 485 1.0 1.0 1.0 3.0 500 chr3L 789918 intergenic not near genes chr3L 790168 intergenic not near genes chr3L 790418 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-105 568 chr3L 858003 858030 chr3L 866480 866511 Tirant 12 8470 3.5 3.0 3.2 2.9 8508 chr3L 858003 intergenic not near genes chr3L 862257 intergenic not near genes chr3L 866511 5` UTR CG12502 + chr3L_12_860001 chr3L_860001 RAL-105 569 chr3L 925174 925205 chr3L 932600 932631 mdg1 5 7426 3.5 2.0 2.8 1.3 7457 chr3L 925174 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932631 intron Glut1 + chr3L_5_925001 chr3L_925001 RAL-105 570 chr3L 933910 933934 chr3L 934013 934037 7 103 0.0 2.5 1.2 3.2 127 chr3L 933910 intron Glut1 + chr3L 933974 intron Glut1 + chr3L 934037 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-105 571 chr3L 939773 939794 chr3L 940894 940915 jockey 8 1121 3.5 3.5 3.5 1.8 1142 chr3L 939773 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940915 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-105 572 chr3L 953932 953949 chr3L 954009 954026 4 76 4.5 3.0 3.8 0.8 94 chr3L 953932 intron Glut1 + chr3L 953979 intron Glut1 + chr3L 954026 intron Glut1 + chr3L_4_950001 chr3L_950001 RAL-105 573 chr3L 1000267 1000296 chr3L 1000350 1000379 7 83 5.0 5.0 5.0 1.2 112 chr3L 1000267 intron trio - chr3L 1000323 intron trio - chr3L 1000379 intron trio - chr3L_7_1000001 chr3L_1000001 RAL-105 574 chr3L 1031575 1031608 chr3L 1031651 1031683 8 75 4.5 2.5 3.5 1.8 108 chr3L 1031575 intron trio - chr3L 1031629 intron trio - chr3L 1031683 intron trio - chr3L_8_1030001 chr3L_1030001 RAL-105 575 chr3L 1109633 1109662 chr3L 1109721 1109750 8 88 1.5 2.0 1.8 2.9 117 chr3L 1109633 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109750 intergenic not near genes chr3L_8_1105001 chr3L_1105001 RAL-105 576 chr3L 1219595 1219624 chr3L 1227328 1227357 412 10 7731 2.0 4.0 3.0 2.5 7762 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-105 577 chr3L 1315024 1315048 chr3L 1315521 1315547 4 498 22.5 18.0 20.2 0.2 523 chr3L 1315024 exon CG9153 + chr3L 1315286 exon CG9153 + chr3L 1315547 exon CG9153 + chr3L_4_1315001 chr3L_1315001 RAL-105 578 chr3L 1310983 1311015 chr3L 1315843 1315875 14 4863 38.0 35.0 36.5 0.4 4892 chr3L 1310983 exon CG2469 + chr3L 1313429 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_14_1310001 chr3L_1310001 RAL-105 579 chr3L 1321560 1321591 chr3L 1321760 1321791 6 200 1.5 0.5 1.0 3.0 231 chr3L 1321560 intron Myo61F + chr3L 1321676 intron Myo61F + chr3L 1321791 intron,3` UTR Myo61F +,CG9184 - chr3L_6_1320001 chr3L_1320001 RAL-105 580 chr3L 1347162 1347178 chr3L 1347247 1347263 6 84 5.5 4.0 4.8 1.0 101 chr3L 1347162 intron Ptp61F - chr3L 1347212 intron Ptp61F - chr3L 1347263 intron Ptp61F - chr3L_6_1345001 chr3L_1345001 RAL-105 581 chr3L 1385175 1385190 chr3L 1385263 1385278 4 88 3.5 1.5 2.5 1.1 103 chr3L 1385175 intron,intron Ptp61F -,ru + chr3L 1385226 intron,intron Ptp61F -,ru + chr3L 1385278 intron,intron Ptp61F -,ru + chr3L_4_1385001 chr3L_1385001 RAL-105 582 chr3L 1415783 1415802 chr3L 1415865 1415884 6 82 6.0 3.0 4.5 1.1 101 chr3L 1415783 intron Ptp61F - chr3L 1415834 intron Ptp61F - chr3L 1415884 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-105 583 chr3L 1463432 1463450 chr3L 1463513 1463530 6 79 3.5 2.0 2.8 1.6 98 chr3L 1463432 intron Ptp61F - chr3L 1463481 intron Ptp61F - chr3L 1463530 intron Ptp61F - chr3L_6_1460001 chr3L_1460001 RAL-105 584 chr3L 1505997 1506023 chr3L 1513594 1513620 17.6 7 7597 3.5 2.0 2.8 1.8 7623 chr3L 1505997 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513620 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-105 585 chr3L 2139207 2139223 chr3L 2139288 2139303 4 81 2.0 4.0 3.0 1.0 96 chr3L 2139207 intron zormin - chr3L 2139255 intron zormin - chr3L 2139303 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-105 586 chr3L 2168778 2168806 chr3L 2168868 2168897 11 90 4.0 3.5 3.8 2.3 119 chr3L 2168778 exon CG15879 - chr3L 2168838 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_11_2165001 chr3L_2165001 RAL-105 587 chr3L 2187607 2187631 chr3L 2187690 2187714 6 82 3.0 0.5 1.8 2.1 107 chr3L 2187607 exon CG13810 + chr3L 2187660 3` UTR CG13810 + chr3L 2187714 intergenic CG13810 + chr3L_6_2185001 chr3L_2185001 RAL-105 588 chr3L 2218480 2218499 chr3L 2218552 2218573 8 74 5.5 2.5 4.0 1.6 93 chr3L 2218480 intergenic not near genes chr3L 2218526 intergenic not near genes chr3L 2218573 intergenic not near genes chr3L_8_2215001 chr3L_2215001 RAL-105 589 chr3L 2282988 2283024 chr3L 2283064 2283100 4 76 2.5 1.0 1.8 1.4 112 chr3L 2282988 5` UTR MsR2 + chr3L 2283044 5` UTR MsR2 + chr3L 2283100 5` UTR MsR2 + chr3L_4_2280001 chr3L_2280001 RAL-105 590 chr3L 2447508 2447534 chr3L 2456664 2456687 roo 6 9155 0.0 1.5 0.8 3.3 9179 chr3L 2447508 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-105 591 chr3L 2479014 2479036 chr3L 2479109 2479133 9 96 2.5 5.0 3.8 1.9 119 chr3L 2479014 intron CG45186 + chr3L 2479074 intron CG45186 + chr3L 2479133 intron CG45186 + chr3L_9_2475001 chr3L_2475001 RAL-105 592 chr3L 2501598 2501633 chr3L 2501696 2501731 5 98 3.0 1.5 2.2 1.6 133 chr3L 2501598 intron CG16758 - chr3L 2501664 intron CG16758 - chr3L 2501731 intron CG16758 - chr3L_5_2500001 chr3L_2500001 RAL-105 593 chr3L 2533652 2533682 chr3L 2533734 2533764 9 79 3.5 4.5 4.0 1.8 112 chr3L 2533652 intron Spn - chr3L 2533708 intron Spn - chr3L 2533764 intron Spn - chr3L_9_2530001 chr3L_2530001 RAL-105 594 chr3L 2561532 2561558 chr3L 2561609 2561635 4 77 0.5 0.5 0.5 2.7 103 chr3L 2561532 intron msn - chr3L 2561584 intron msn - chr3L 2561635 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-105 595 chr3L 2631061 2631093 chr3L 2631170 2631203 13 110 2.0 3.0 2.5 3.7 142 chr3L 2631061 intergenic CR45660 - chr3L 2631132 intergenic CR45660 - chr3L 2631203 intergenic not near genes chr3L_13_2630001 chr3L_2630001 RAL-105 596 chr3L 2795724 2795749 chr3L 2795846 2795872 5 123 1.0 0.5 0.8 2.8 148 chr3L 2795724 intron CG43444 - chr3L 2795798 intron CG43444 - chr3L 2795872 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-105 597 chr3L 2854484 2854503 chr3L 2854562 2854581 11 76 2.0 6.0 4.0 2.2 97 chr3L 2854484 intron CG43444 - chr3L 2854532 intron CG43444 - chr3L 2854581 intron CG43444 - chr3L_11_2850001 chr3L_2850001 RAL-105 598 chr3L 2927838 2927865 chr3L 2936115 2936142 Tirant 5 8277 2.5 0.0 1.2 2.3 8304 chr3L 2927838 intron Shab + chr3L 2931990 intron Shab + chr3L 2936142 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-105 599 chr3L 3028352 3028366 chr3L 3028431 3028437 6 78 2.0 5.5 3.8 1.2 85 chr3L 3028352 intergenic not near genes chr3L 3028394 intergenic not near genes chr3L 3028437 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-105 600 chr3L 3314135 3314170 chr3L 3314269 3314287 13 131 8.0 5.5 6.8 1.7 152 chr3L 3314135 intergenic ZnT63C +,Drsl2 + chr3L 3314211 intergenic Drsl2 +,ZnT63C + chr3L 3314287 intergenic Drsl2 +,ZnT63C + chr3L_13_3310001 chr3L_3310001 RAL-105 601 chr3L 3312278 3312283 chr3L 3315559 3315583 7 3284 19.0 12.0 15.5 0.4 3305 chr3L 3312278 exon ZnT63C + chr3L 3313930 3` UTR ZnT63C + chr3L 3315583 intergenic Drsl4 +,Drsl3 + chr3L_7_3310001 chr3L_3310001 RAL-105 602 chr3L 3475082 3475112 chr3L 3475526 3475556 jockey 13 444 2.0 3.0 2.5 3.7 474 chr3L 3475082 intron CG42324 + chr3L 3475319 intron CG42324 + chr3L 3475556 intron CG42324 + chr3L_13_3475001 chr3L_3475001 RAL-105 603 chr3L 3565947 3565954 chr3L 3566023 3566028 5 75 3.5 6.5 5.0 0.8 81 chr3L 3565947 intron Eip63E + chr3L 3565988 intron Eip63E + chr3L 3566028 intron Eip63E + chr3L_5_3565001 chr3L_3565001 RAL-105 604 chr3L 3565956 3565971 chr3L 3566015 3566047 5 69 2.0 6.5 4.2 1.0 91 chr3L 3565956 intron Eip63E + chr3L 3566002 intron Eip63E + chr3L 3566047 intron Eip63E + chr3L_5_3565001 chr3L_3565001 RAL-105 605 chr3L 3581020 3581034 chr3L 3581115 3581129 5 95 3.0 4.5 3.8 1.0 109 chr3L 3581020 intron Eip63E + chr3L 3581074 intron Eip63E + chr3L 3581129 intron Eip63E + chr3L_5_3580001 chr3L_3580001 RAL-105 606 chr3L 3592430 3592442 chr3L 3592715 3592728 5 285 4.5 3.0 3.8 1.0 298 chr3L 3592430 intron Eip63E + chr3L 3592579 intron Eip63E + chr3L 3592728 intron Eip63E + chr3L_5_3590001 chr3L_3590001 RAL-105 607 chr3L 3592444 3592450 chr3L 3592712 3592736 5 282 3.5 2.5 3.0 1.2 292 chr3L 3592444 intron Eip63E + chr3L 3592590 intron Eip63E + chr3L 3592736 intron Eip63E + chr3L_5_3590001 chr3L_3590001 RAL-105 608 chr3L 3601296 3601325 chr3L 3606607 3606636 copia 7 5310 4.0 1.0 2.5 2.0 5340 chr3L 3601296 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606636 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-105 609 chr3L 3796398 3796423 chr3L 3796726 3796752 4 329 0.0 2.5 1.2 1.8 354 chr3L 3796398 intron CG32264 - chr3L 3796575 intron CG32264 - chr3L 3796752 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-105 610 chr3L 3845556 3845583 chr3L 3845651 3845677 8 94 1.0 1.0 1.0 4.0 121 chr3L 3845556 intergenic not near genes chr3L 3845616 intergenic not near genes chr3L 3845677 intergenic not near genes chr3L_8_3845001 chr3L_3845001 RAL-105 611 chr3L 4210927 4210942 chr3L 4211005 4211022 6 79 1.0 5.0 3.0 1.5 95 chr3L 4210927 intron,3` UTR CG43367 +,Cpr64Ab - chr3L 4210974 intron,3` UTR CG43367 +,Cpr64Ab - chr3L 4211022 intron,exon CG43367 +,Cpr64Ab - chr3L_6_4210001 chr3L_4210001 RAL-105 612 chr3L 4420001 4420027 chr3L 4420090 4420116 5 89 2.5 0.5 1.5 2.0 115 chr3L 4420001 3` UTR DOR + chr3L 4420058 3` UTR DOR + chr3L 4420116 3` UTR DOR + chr3L_5_4420001 chr3L_4420001 RAL-105 613 chr3L 4446211 4446238 chr3L 4446297 4446323 7 86 1.5 5.5 3.5 1.6 112 chr3L 4446211 3` UTR CR45739 - chr3L 4446267 3` UTR CR45739 - chr3L 4446323 3` UTR CR45739 - chr3L_7_4445001 chr3L_4445001 RAL-105 614 chr3L 4519424 4519452 chr3L 4519501 4519529 6 77 1.5 0.0 0.8 3.3 105 chr3L 4519424 intron Tie - chr3L 4519476 intron Tie - chr3L 4519529 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-105 615 chr3L 4561009 4561036 chr3L 4561085 4561115 14 77 5.0 1.5 3.2 3.3 106 chr3L 4561009 intron CG42540 + chr3L 4561062 intron CG42540 + chr3L 4561115 intron CG42540 + chr3L_14_4560001 chr3L_4560001 RAL-105 616 chr3L 4597213 4597246 chr3L 4597295 4597327 10 80 2.0 5.5 3.8 2.1 114 chr3L 4597213 intron Src64B - chr3L 4597270 intron Src64B - chr3L 4597327 intron Src64B - chr3L_10_4595001 chr3L_4595001 RAL-105 617 chr3L 4657976 4657997 chr3L 4658438 4658459 8 462 3.0 2.0 2.5 2.3 483 chr3L 4657976 intron axo - chr3L 4658218 intron axo - chr3L 4658459 intron axo - chr3L_8_4655001 chr3L_4655001 RAL-105 618 chr3L 4725326 4725355 chr3L 4725414 4725443 9 87 2.5 2.5 2.5 2.6 117 chr3L 4725326 intron RhoGEF64C + chr3L 4725384 intron RhoGEF64C + chr3L 4725443 intron RhoGEF64C + chr3L_9_4725001 chr3L_4725001 RAL-105 619 chr3L 4858321 4858334 chr3L 4858393 4858404 7 83 6.5 4.5 5.5 1.1 83 chr3L 4858321 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858404 intergenic not near genes chr3L_7_4855001 chr3L_4855001 RAL-105 620 chr3L 4901148 4901157 chr3L 4907318 4907333 diver 4 6181 2.0 0.5 1.2 1.8 6185 chr3L 4901148 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907333 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-105 621 chr3L 5017034 5017064 chr3L 5017127 5017156 14 92 5.5 2.0 3.8 2.9 122 chr3L 5017034 intron Con - chr3L 5017095 intron Con - chr3L 5017156 intron Con - chr3L_14_5015001 chr3L_5015001 RAL-105 622 chr3L 5104487 5104497 chr3L 5124621 5124631 4 20134 1.5 2.5 2.0 1.3 20144 chr3L 5104487 intergenic not near genes chr3L 5114559 intergenic not near genes chr3L 5124631 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-105 623 chr3L 5381833 5381863 chr3L 5381913 5381943 8 77 2.0 3.0 2.5 2.3 110 chr3L 5381833 exon Ir64a - chr3L 5381888 exon Ir64a - chr3L 5381943 exon Ir64a - chr3L_8_5380001 chr3L_5380001 RAL-105 624 chr3L 5482943 5483087 chr3L 5483152 5483205 10 136 2.5 1.0 1.8 3.6 262 chr3L 5482943 exon CG4835 + chr3L 5483074 exon CG4835 + chr3L 5483205 exon CG4835 + chr3L_10_5480001 chr3L_5480001 RAL-105 625 chr3L 5498385 5498430 chr3L 5498474 5498481 5 74 0.5 3.0 1.8 1.8 96 chr3L 5498385 exon blanks - chr3L 5498433 exon blanks - chr3L 5498481 exon blanks - chr3L_5_5495001 chr3L_5495001 RAL-105 626 chr3L 5516409 5516438 chr3L 5516503 5516507 5 88 1.5 2.0 1.8 1.8 98 chr3L 5516409 intron Lkr - chr3L 5516458 intron Lkr - chr3L 5516507 intron Lkr - chr3L_5_5515001 chr3L_5515001 RAL-105 627 chr3L 5519825 5519834 chr3L 5519910 5519919 4 85 2.5 2.5 2.5 1.1 94 chr3L 5519825 intron Lkr - chr3L 5519872 intron Lkr - chr3L 5519919 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-105 628 chr3L 5926319 5926350 chr3L 5926508 5926522 BS 9 183 3.0 5.0 4.0 1.8 203 chr3L 5926319 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926522 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-105 629 chr3L 6052652 6052667 chr3L 6052737 6052745 5 82 9.0 8.5 8.8 0.5 93 chr3L 6052652 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052745 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-105 630 chr3L 6220912 6220928 chr3L 6230064 6230080 roo 4 9152 3.0 1.5 2.2 1.2 9168 chr3L 6220912 5` UTR pncr008:3L + chr3L 6225496 intergenic not near genes chr3L 6230080 intergenic not near genes chr3L_4_6225001 chr3L_6225001 RAL-105 631 chr3L 6268996 6269021 chr3L 6269362 6269390 13 368 9.0 9.5 9.2 1.3 394 chr3L 6268996 intergenic not near genes chr3L 6269193 intergenic not near genes chr3L 6269390 intergenic not near genes chr3L_13_6265001 chr3L_6265001 RAL-105 632 chr3L 6315012 6315039 chr3L 6315106 6315131 5 95 1.5 0.5 1.0 2.5 119 chr3L 6315012 intergenic not near genes chr3L 6315072 intergenic not near genes chr3L 6315131 intergenic not near genes chr3L_5_6315001 chr3L_6315001 RAL-105 633 chr3L 6335019 6335038 chr3L 6335490 6335509 297 6 470 1.0 4.5 2.8 1.6 490 chr3L 6335019 intron CG13300 - chr3L 6335264 intron CG13300 - chr3L 6335509 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-105 634 chr3L 6620530 6620546 chr3L 6621054 6621063 Rt1c 7 522 3.5 7.0 5.2 1.1 533 chr3L 6620530 intergenic not near genes chr3L 6620796 intergenic not near genes chr3L 6621063 intergenic not near genes chr3L_7_6620001 chr3L_6620001 RAL-105 635 chr3L 6685193 6685215 chr3L 6685271 6685293 4 78 0.0 2.0 1.0 2.0 100 chr3L 6685193 intergenic not near genes chr3L 6685243 intergenic not near genes chr3L 6685293 intergenic not near genes chr3L_4_6685001 chr3L_6685001 RAL-105 636 chr3L 6855932 6855939 chr3L 6860716 6860723 Doc 4 4784 3.5 4.5 4.0 0.8 4791 chr3L 6855932 intergenic not near genes chr3L 6858328 intergenic not near genes chr3L 6860723 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-105 637 chr3L 6887515 6887544 chr3L 6895007 6895036 roo 4 7492 3.0 0.5 1.8 1.4 7521 chr3L 6887515 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895036 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-105 638 chr3L 6942065 6942087 chr3L 6942163 6942186 6 99 1.5 2.0 1.8 2.1 121 chr3L 6942065 intergenic not near genes chr3L 6942126 intergenic not near genes chr3L 6942186 intergenic not near genes chr3L_6_6940001 chr3L_6940001 RAL-105 639 chr3L 6974507 6974519 chr3L 6974608 6974620 4 101 0.0 4.5 2.2 1.2 113 chr3L 6974507 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974620 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-105 640 chr3L 6986369 6986390 chr3L 6986584 6986607 5 213 2.0 3.5 2.8 1.3 238 chr3L 6986369 intergenic not near genes chr3L 6986488 intergenic not near genes chr3L 6986607 intergenic not near genes chr3L_5_6985001 chr3L_6985001 RAL-105 641 chr3L 7375923 7375959 chr3L 7375999 7376031 9 75 3.0 1.0 2.0 3.0 108 chr3L 7375923 intron SMSr - chr3L 7375977 intron SMSr - chr3L 7376031 intron SMSr - chr3L_9_7375001 chr3L_7375001 RAL-105 642 chr3L 7377318 7377345 chr3L 7380423 7380450 297 5 3104 2.0 3.0 2.5 1.4 3132 chr3L 7377318 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380450 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-105 643 chr3L 7572061 7572087 chr3L 7572153 7572167 7 89 1.0 5.5 3.2 1.7 106 chr3L 7572061 intergenic not near genes chr3L 7572114 intergenic not near genes chr3L 7572167 intergenic not near genes chr3L_7_7570001 chr3L_7570001 RAL-105 644 chr3L 7886528 7886537 chr3L 7889046 7889055 Stalker4 6 2518 0.0 1.5 0.8 3.3 2527 chr3L 7886528 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889055 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-105 645 chr3L 8051321 8051332 chr3L 8051397 8051409 4 77 1.0 1.5 1.2 1.8 88 chr3L 8051321 3` UTR nmo + chr3L 8051365 3` UTR nmo + chr3L 8051409 3` UTR nmo + chr3L_4_8050001 chr3L_8050001 RAL-105 646 chr3L 8295790 8295823 chr3L 8295948 8295981 7 158 3.5 1.5 2.5 2.0 191 chr3L 8295790 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295981 intergenic not near genes chr3L_7_8295001 chr3L_8295001 RAL-105 647 chr3L 8481795 8481802 chr3L 8490953 8490955 roo 4 9157 3.0 6.0 4.5 0.7 9160 chr3L 8481795 intron CG43163 - chr3L 8486375 intron CG43163 - chr3L 8490955 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-105 648 chr3L 8498299 8498328 chr3L 8505766 8505795 blood 9 7466 0.0 2.0 1.0 4.5 7496 chr3L 8498299 intron CG43163 - chr3L 8502047 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_9_8500001 chr3L_8500001 RAL-105 649 chr3L 8540711 8540738 chr3L 8540788 8540815 4 77 0.5 1.5 1.0 2.0 104 chr3L 8540711 intergenic not near genes chr3L 8540763 intergenic not near genes chr3L 8540815 intergenic not near genes chr3L_4_8540001 chr3L_8540001 RAL-105 650 chr3L 8791288 8791303 chr3L 8796706 8796723 I-element 4 5420 3.5 2.0 2.8 1.1 5435 chr3L 8791288 exon Fhos + chr3L 8794006 intron Fhos + chr3L 8796723 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-105 651 chr3L 8884403 8884425 chr3L 8884602 8884623 6 199 0.5 0.0 0.2 5.0 220 chr3L 8884403 intron dally + chr3L 8884513 intron dally + chr3L 8884623 intron dally + chr3L_6_8880001 chr3L_8880001 RAL-105 652 chr3L 9042546 9042565 chr3L 9042624 9042643 6 77 2.0 3.5 2.8 1.6 97 chr3L 9042546 intron Doc1 + chr3L 9042594 intron Doc1 + chr3L 9042643 intron Doc1 + chr3L_6_9040001 chr3L_9040001 RAL-105 653 chr3L 9076931 9076958 chr3L 9084491 9084518 412 8 7560 4.5 4.5 4.5 1.5 7587 chr3L 9076931 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084518 exon Tequila + chr3L_8_9080001 chr3L_9080001 RAL-105 654 chr3L 9130573 9130577 chr3L 9134334 9134338 412 5 3761 0.5 3.5 2.0 1.7 3765 chr3L 9130573 intergenic bol - chr3L 9132456 intergenic not near genes chr3L 9134338 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-105 655 chr3L 9219242 9219277 chr3L 9219914 9219930 jockey 12 667 6.0 7.0 6.5 1.6 688 chr3L 9219242 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219930 intergenic not near genes chr3L_12_9215001 chr3L_9215001 RAL-105 656 chr3L 9270621 9270635 chr3L 9278376 9278390 roo 4 7754 3.0 4.5 3.8 0.8 7769 chr3L 9270621 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278390 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-105 657 chr3L 9476509 9476531 chr3L 9478363 9478386 7 1855 30.0 2.5 16.2 0.4 1877 chr3L 9476509 exon Uch-L5 - chr3L 9477448 5` UTR Jarid2 + chr3L 9478386 intron Jarid2 + chr3L_7_9475001 chr3L_9475001 RAL-105 658 chr3L 9510945 9510954 chr3L 9511023 9511033 4 79 0.0 7.5 3.8 0.8 88 chr3L 9510945 intron RpS9 - chr3L 9510989 intron RpS9 - chr3L 9511033 intron RpS9 - chr3L_4_9510001 chr3L_9510001 RAL-105 659 chr3L 9533753 9533776 chr3L 9541313 9541318 412 4 7552 6.0 7.0 6.5 0.5 7565 chr3L 9533753 intergenic not near genes chr3L 9537536 intergenic not near genes chr3L 9541318 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-105 660 chr3L 9575909 9575936 chr3L 9580987 9581014 jockey 6 5078 9.0 2.0 5.5 0.9 5105 chr3L 9575909 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581014 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-105 661 chr3L 9637865 9637886 chr3L 9637946 9637968 6 81 3.0 2.5 2.8 1.6 103 chr3L 9637865 intron fry - chr3L 9637916 intron fry - chr3L 9637968 intron fry - chr3L_6_9635001 chr3L_9635001 RAL-105 662 chr3L 9824158 9824169 chr3L 9824237 9824248 4 79 0.5 0.0 0.2 3.3 90 chr3L 9824158 intron CG43897 + chr3L 9824203 intron CG43897 + chr3L 9824248 intron CG43897 + chr3L_4_9820001 chr3L_9820001 RAL-105 663 chr3L 9848516 9848526 chr3L 9848592 9848602 4 76 9.0 0.0 4.5 0.7 86 chr3L 9848516 intron RasGAP1 - chr3L 9848559 intron RasGAP1 - chr3L 9848602 intron RasGAP1 - chr3L_4_9845001 chr3L_9845001 RAL-105 664 chr3L 9907878 9907895 chr3L 9907953 9907972 8 76 5.0 3.5 4.2 1.5 94 chr3L 9907878 intergenic CG34356 + chr3L 9907925 intergenic CG34356 + chr3L 9907972 intergenic CG34356 + chr3L_8_9905001 chr3L_9905001 RAL-105 665 chr3L 9929670 9929700 chr3L 9938451 9938464 roo 8 8777 1.0 1.5 1.2 3.6 8794 chr3L 9929670 intron CG34356 + chr3L 9934067 intron CG34356 + chr3L 9938464 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-105 666 chr3L 10298675 10298691 chr3L 10298762 10298778 5 87 0.0 1.0 0.5 3.3 103 chr3L 10298675 intergenic not near genes chr3L 10298726 intergenic not near genes chr3L 10298778 intergenic not near genes chr3L_5_10295001 chr3L_10295001 RAL-105 667 chr3L 10308738 10308771 chr3L 10308815 10308848 6 77 1.5 2.5 2.0 2.0 110 chr3L 10308738 intergenic not near genes chr3L 10308793 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-105 668 chr3L 10405296 10405322 chr3L 10405513 10405539 10 216 1.0 3.0 2.0 3.3 243 chr3L 10405296 intergenic not near genes chr3L 10405418 intergenic not near genes chr3L 10405539 intergenic not near genes chr3L_10_10405001 chr3L_10405001 RAL-105 669 chr3L 10414948 10414978 chr3L 10417320 10417334 Doc 8 2370 0.5 1.5 1.0 4.0 2386 chr3L 10414948 intergenic CG12362 + chr3L 10416141 intergenic not near genes chr3L 10417334 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-105 670 chr3L 10470264 10470275 chr3L 10470342 10470362 5 85 5.5 5.0 5.2 0.8 98 chr3L 10470264 intergenic not near genes chr3L 10470313 intergenic not near genes chr3L 10470362 intergenic not near genes chr3L_5_10470001 chr3L_10470001 RAL-105 671 chr3L 10526635 10526649 chr3L 10526715 10526718 9 79 2.0 4.0 3.0 2.2 83 chr3L 10526635 intron A2bp1 + chr3L 10526676 intron A2bp1 + chr3L 10526718 intron A2bp1 + chr3L_9_10525001 chr3L_10525001 RAL-105 672 chr3L 10658096 10658212 chr3L 10658173 10658339 5 117 0.0 0.0 0.0 5.0 243 chr3L 10658096 intron CG32066 - chr3L 10658218 intron CG32066 - chr3L 10658339 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-105 673 chr3L 10881321 10881331 chr3L 10881473 10881483 4 152 7.5 22.5 15.0 0.2 162 chr3L 10881321 exon CG6409 - chr3L 10881402 exon CG6409 - chr3L 10881483 exon CG6409 - chr3L_4_10880001 chr3L_10880001 RAL-105 674 chr3L 10956454 10956467 chr3L 10956572 10956585 7 117 1.0 4.0 2.5 2.0 131 chr3L 10956454 intergenic not near genes chr3L 10956520 intergenic not near genes chr3L 10956585 intergenic not near genes chr3L_7_10955001 chr3L_10955001 RAL-105 675 chr3L 11087062 11087089 chr3L 11088851 11088878 S-element 5 1789 0.5 1.0 0.8 2.8 1816 chr3L 11087062 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-105 676 chr3L 11105290 11105329 chr3L 11107001 11107040 X-element 10 1711 1.5 0.0 0.8 5.6 1750 chr3L 11105290 intergenic not near genes chr3L 11106165 intergenic not near genes chr3L 11107040 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-105 677 chr3L 11121588 11121609 chr3L 11123006 11123016 4 1414 24.0 33.0 28.5 0.1 1428 chr3L 11121588 exon mRpL2 + chr3L 11122302 exon Ufd1-like - chr3L 11123016 exon Ufd1-like - chr3L_4_11120001 chr3L_11120001 RAL-105 678 chr3L 11121587 11121608 chr3L 11123017 11123028 6 1417 24.0 28.0 26.0 0.2 1441 chr3L 11121587 exon mRpL2 + chr3L 11122308 exon Ufd1-like - chr3L 11123028 exon Ufd1-like - chr3L_6_11120001 chr3L_11120001 RAL-105 679 chr3L 11135772 11135804 chr3L 11135856 11135889 9 85 0.0 1.0 0.5 6.0 117 chr3L 11135772 intergenic CG32082 +,CG14143 + chr3L 11135830 intergenic CG32082 +,CG14143 + chr3L 11135889 intergenic CG32082 +,CG14143 + chr3L_9_11135001 chr3L_11135001 RAL-105 680 chr3L 11157732 11157762 chr3L 11157851 11157881 4 119 1.5 1.5 1.5 1.6 149 chr3L 11157732 intron CG32082 + chr3L 11157806 intron CG32082 + chr3L 11157881 intron CG32082 + chr3L_4_11155001 chr3L_11155001 RAL-105 681 chr3L 11264472 11264492 chr3L 11271424 11271444 17.6 6 6952 1.0 0.5 0.8 3.3 6972 chr3L 11264472 intergenic not near genes chr3L 11267958 intergenic not near genes chr3L 11271444 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-105 682 chr3L 11405136 11405167 chr3L 11405295 11405326 4 159 2.0 4.5 3.2 1.0 190 chr3L 11405136 intergenic CR44363 + chr3L 11405231 intergenic CR44363 + chr3L 11405326 intergenic CR44363 + chr3L_4_11405001 chr3L_11405001 RAL-105 683 chr3L 11434479 11434498 chr3L 11434707 11434726 4 228 2.0 0.0 1.0 2.0 247 chr3L 11434479 intergenic CG6149 - chr3L 11434602 intergenic CG6149 - chr3L 11434726 3` UTR CG6149 - chr3L_4_11430001 chr3L_11430001 RAL-105 684 chr3L 11453067 11453096 chr3L 11453151 11453180 8 84 3.0 4.0 3.5 1.8 113 chr3L 11453067 intergenic not near genes chr3L 11453124 intergenic not near genes chr3L 11453180 intergenic not near genes chr3L_8_11450001 chr3L_11450001 RAL-105 685 chr3L 11545374 11545393 chr3L 11545869 11545891 9 495 2.0 1.0 1.5 3.6 517 chr3L 11545374 intron Mob2 - chr3L 11545632 intron Mob2 - chr3L 11545891 intron Mob2 - chr3L_9_11545001 chr3L_11545001 RAL-105 686 chr3L 11549603 11549609 chr3L 11549813 11549834 4 218 5.0 1.5 3.2 1.0 231 chr3L 11549603 intron Mob2 - chr3L 11549718 intron Mob2 - chr3L 11549834 intron Mob2 - chr3L_4_11545001 chr3L_11545001 RAL-105 687 chr3L 11564797 11564811 chr3L 11572411 11572435 412 5 7622 5.0 2.5 3.8 1.0 7638 chr3L 11564797 exon CG33267 + chr3L 11568616 intron CG33267 + chr3L 11572435 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-105 688 chr3L 11579555 11579578 chr3L 11579661 11579684 6 106 2.5 1.5 2.0 2.0 129 chr3L 11579555 intergenic CG43390 - chr3L 11579620 intergenic CG43390 - chr3L 11579684 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-105 689 chr3L 11583729 11583756 chr3L 11588140 11588167 5 4411 28.0 14.0 21.0 0.2 4438 chr3L 11583729 exon CG32086 - chr3L 11585948 exon rt - chr3L 11588167 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-105 690 chr3L 11653821 11653856 chr3L 11653902 11653938 17 81 2.0 3.0 2.5 4.9 117 chr3L 11653821 intron CG32085 - chr3L 11653880 intron CG32085 - chr3L 11653938 exon CG32085 - chr3L_17_11650001 chr3L_11650001 RAL-105 691 chr3L 802565 802566 chr3L 11777678 11777678 4 10975112 9.5 6.0 7.8 0.5 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-105 692 chr3L 11811462 11811489 chr3L 11811540 11811564 9 77 0.0 4.0 2.0 3.0 102 chr3L 11811462 intron CG42255 - chr3L 11811513 intron CG42255 - chr3L 11811564 exon CG42255 - chr3L_9_11810001 chr3L_11810001 RAL-105 693 chr3L 11864552 11864581 chr3L 11865847 11865876 pogo 5 1295 3.0 1.0 2.0 1.7 1324 chr3L 11864552 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865876 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-105 694 chr3L 11940458 11940473 chr3L 11940543 11940543 7 83 3.0 4.5 3.8 1.5 85 chr3L 11940458 intergenic not near genes chr3L 11940500 intergenic not near genes chr3L 11940543 intergenic not near genes chr3L_7_11940001 chr3L_11940001 RAL-105 695 chr3L 11940476 11940482 chr3L 11940541 11940567 5 77 1.5 4.0 2.8 1.3 91 chr3L 11940476 intergenic not near genes chr3L 11940522 intergenic not near genes chr3L 11940567 intergenic not near genes chr3L_5_11940001 chr3L_11940001 RAL-105 696 chr3L 12013911 12013934 chr3L 12014002 12014018 9 90 3.5 2.0 2.8 2.4 107 chr3L 12013911 intron rols - chr3L 12013964 intron rols - chr3L 12014018 intron rols - chr3L_9_12010001 chr3L_12010001 RAL-105 697 chr3L 12273105 12273119 chr3L 12273411 12273412 4 303 4.0 1.0 2.5 1.1 307 chr3L 12273105 intron CG4300 - chr3L 12273258 intron CG4300 - chr3L 12273412 intron CG4300 - chr3L_4_12270001 chr3L_12270001 RAL-105 698 chr3L 12612576 12612612 chr3L 12612669 12612705 7 92 2.0 3.0 2.5 2.0 129 chr3L 12612576 intron caup + chr3L 12612640 intron caup + chr3L 12612705 intron caup + chr3L_7_12610001 chr3L_12610001 RAL-105 699 chr3L 12615764 12615772 chr3L 12615830 12615846 4 70 2.0 5.5 3.8 0.8 82 chr3L 12615764 intron caup + chr3L 12615805 intron caup + chr3L 12615846 intron caup + chr3L_4_12615001 chr3L_12615001 RAL-105 700 chr3L 12647948 12647976 chr3L 12648024 12648052 6 76 1.5 0.0 0.8 3.3 104 chr3L 12647948 5` UTR CR32111 + chr3L 12648000 5` UTR CR32111 + chr3L 12648052 5` UTR CR32111 + chr3L_6_12645001 chr3L_12645001 RAL-105 701 chr3L 12801984 12802013 chr3L 12802054 12802087 4 73 1.0 0.5 0.8 2.2 103 chr3L 12801984 intron Atg1 - chr3L 12802036 intron Atg1 - chr3L 12802087 intron Atg1 - chr3L_4_12800001 chr3L_12800001 RAL-105 702 chr3L 12874927 12874961 chr3L 12877219 12877253 jockey 5 2292 0.5 1.0 0.8 2.8 2326 chr3L 12874927 intergenic not near genes chr3L 12876090 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-105 703 chr3L 12894802 12894815 chr3L 12894880 12894893 7 78 1.5 7.5 4.5 1.3 91 chr3L 12894802 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894893 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-105 704 chr3L 12919284 12919305 chr3L 12924752 12924778 Rt1c 8 5470 4.0 2.5 3.2 1.9 5494 chr3L 12919284 intergenic not near genes chr3L 12922031 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-105 705 chr3L 12966975 12967007 chr3L 12967605 12967635 13 630 1.5 1.0 1.2 5.9 660 chr3L 12966975 exon Or69a - chr3L 12967305 exon Or69a - chr3L 12967635 exon Or69a - chr3L_13_12965001 chr3L_12965001 RAL-105 706 chr3L 13007693 13007727 chr3L 13007772 13007805 6 79 1.0 1.0 1.0 3.0 112 chr3L 13007693 exon CG11263 + chr3L 13007749 3` UTR CG11263 + chr3L 13007805 3` UTR CG11263 + chr3L_6_13005001 chr3L_13005001 RAL-105 707 chr3L 13074036 13074050 chr3L 13074169 13074183 5 133 5.0 2.0 3.5 1.1 147 chr3L 13074036 intergenic not near genes chr3L 13074110 intergenic not near genes chr3L 13074183 intergenic not near genes chr3L_5_13070001 chr3L_13070001 RAL-105 708 chr3L 13265191 13265210 chr3L 13265269 13265287 7 78 0.5 3.0 1.8 2.5 96 chr3L 13265191 5` UTR caps + chr3L 13265239 5` UTR caps + chr3L 13265287 5` UTR caps + chr3L_7_13265001 chr3L_13265001 RAL-105 709 chr3L 13267282 13267308 chr3L 13267395 13267421 6 111 2.5 0.0 1.2 2.7 139 chr3L 13267282 intron caps + chr3L 13267352 intron caps + chr3L 13267421 intron caps + chr3L_6_13265001 chr3L_13265001 RAL-105 710 chr3L 13406268 13406298 chr3L 13406351 13406365 9 81 2.5 3.0 2.8 2.4 97 chr3L 13406268 intergenic not near genes chr3L 13406316 intergenic not near genes chr3L 13406365 intergenic not near genes chr3L_9_13405001 chr3L_13405001 RAL-105 711 chr3L 13491817 13491834 chr3L 13491924 13491939 8 107 0.5 4.5 2.5 2.3 122 chr3L 13491817 intron Tgi + chr3L 13491878 intron Tgi + chr3L 13491939 intron Tgi + chr3L_8_13490001 chr3L_13490001 RAL-105 712 chr3L 13525154 13525187 chr3L 13532950 13532983 roo 9 7796 3.5 5.0 4.2 1.7 7829 chr3L 13525154 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532983 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-105 713 chr3L 13634834 13634867 chr3L 13634917 13634936 9 78 2.0 2.5 2.2 2.8 102 chr3L 13634834 intron bru-3 - chr3L 13634885 intron bru-3 - chr3L 13634936 intron bru-3 - chr3L_9_13630001 chr3L_13630001 RAL-105 714 chr3L 13783188 13783199 chr3L 13783283 13783294 5 95 2.0 1.0 1.5 2.0 106 chr3L 13783188 intron bru-3 - chr3L 13783241 intron bru-3 - chr3L 13783294 intron bru-3 - chr3L_5_13780001 chr3L_13780001 RAL-105 715 chr3L 13910831 13910846 chr3L 13910913 13910928 4 81 0.0 1.5 0.8 2.2 97 chr3L 13910831 intron Rgl - chr3L 13910880 intron Rgl - chr3L 13910928 intron Rgl - chr3L_4_13910001 chr3L_13910001 RAL-105 716 chr3L 13990899 13990931 chr3L 13990975 13991007 6 75 2.5 1.5 2.0 2.0 108 chr3L 13990899 intron CG17364 - chr3L 13990953 intron CG17364 - chr3L 13991007 intron CG17364 - chr3L_6_13990001 chr3L_13990001 RAL-105 717 chr3L 14245570 14245593 chr3L 14245659 14245686 1360 6 93 3.0 0.0 1.5 2.4 116 chr3L 14245570 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245686 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-105 718 chr3L 14248484 14248506 chr3L 14248561 14248583 7 78 1.5 2.5 2.0 2.3 99 chr3L 14248484 intergenic not near genes chr3L 14248534 intergenic not near genes chr3L 14248583 intergenic not near genes chr3L_7_14245001 chr3L_14245001 RAL-105 719 chr3L 14356527 14356547 chr3L 14356599 14356627 6 79 5.0 2.0 3.5 1.3 100 chr3L 14356527 intron fz + chr3L 14356577 intron fz + chr3L 14356627 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-105 720 chr3L 14425686 14425707 chr3L 14425770 14425792 5 85 2.0 2.0 2.0 1.7 106 chr3L 14425686 intron bbg - chr3L 14425739 intron bbg - chr3L 14425792 intron bbg - chr3L_5_14425001 chr3L_14425001 RAL-105 721 chr3L 14633801 14633815 chr3L 14633897 14633911 4 96 1.0 1.0 1.0 2.0 110 chr3L 14633801 intron dlp + chr3L 14633856 intron dlp + chr3L 14633911 intron dlp + chr3L_4_14630001 chr3L_14630001 RAL-105 722 chr3L 14652637 14652665 chr3L 14652716 14652743 8 79 1.0 2.5 1.8 2.9 106 chr3L 14652637 intron dlp + chr3L 14652690 intron dlp + chr3L 14652743 intron dlp + chr3L_8_14650001 chr3L_14650001 RAL-105 723 chr3L 14721190 14721208 chr3L 14723029 14723039 Rt1c 9 1839 5.0 4.0 4.5 1.6 1849 chr3L 14721190 intron ome + chr3L 14722114 intron ome + chr3L 14723039 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-105 724 chr3L 14729512 14729532 chr3L 14729625 14729645 6 113 2.5 0.5 1.5 2.4 133 chr3L 14729512 intron ome + chr3L 14729578 intron ome + chr3L 14729645 intron ome + chr3L_6_14725001 chr3L_14725001 RAL-105 725 chr3L 14844279 14844287 chr3L 14844366 14844378 5 90 0.0 2.5 1.2 2.3 99 chr3L 14844279 intron CG17839 + chr3L 14844328 intron CG17839 + chr3L 14844378 intron CG17839 + chr3L_5_14840001 chr3L_14840001 RAL-105 726 chr3L 14861813 14861831 chr3L 14861890 14861911 4 78 2.5 1.5 2.0 1.3 98 chr3L 14861813 intron CG17839 + chr3L 14861862 intron CG17839 + chr3L 14861911 intron CG17839 + chr3L_4_14860001 chr3L_14860001 RAL-105 727 chr3L 14922109 14922128 chr3L 14922217 14922231 4 107 3.0 1.0 2.0 1.3 122 chr3L 14922109 intron DCX-EMAP + chr3L 14922170 intron DCX-EMAP + chr3L 14922231 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 RAL-105 728 chr3L 14973639 14973648 chr3L 14973719 14973728 5 79 4.0 3.5 3.8 1.0 89 chr3L 14973639 intergenic Brd + chr3L 14973684 intergenic Brd + chr3L 14973728 intergenic not near genes chr3L_5_14970001 chr3L_14970001 RAL-105 729 chr3L 15010728 15010745 chr3L 15010889 15010914 4 167 1.5 0.5 1.0 2.0 186 chr3L 15010728 intron Reck - chr3L 15010821 intron Reck - chr3L 15010914 intron Reck - chr3L_4_15010001 chr3L_15010001 RAL-105 730 chr3L 15085048 15085082 chr3L 15086214 15086233 1360 5 1159 0.5 2.0 1.2 2.3 1185 chr3L 15085048 intron cp309 - chr3L 15085640 intron cp309 - chr3L 15086233 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-105 731 chr3L 15187620 15187652 chr3L 15187734 15187765 10 111 1.5 0.5 1.0 5.0 145 chr3L 15187620 intergenic not near genes chr3L 15187692 intergenic not near genes chr3L 15187765 intergenic not near genes chr3L_10_15185001 chr3L_15185001 RAL-105 732 chr3L 15384968 15384988 chr3L 15385096 15385115 5 128 1.0 1.0 1.0 2.5 147 chr3L 15384968 intergenic not near genes chr3L 15385042 intergenic not near genes chr3L 15385115 intergenic not near genes chr3L_5_15385001 chr3L_15385001 RAL-105 733 chr3L 15393669 15393693 chr3L 15393871 15393894 5 202 2.0 3.0 2.5 1.4 225 chr3L 15393669 intergenic not near genes chr3L 15393782 intergenic not near genes chr3L 15393894 intergenic not near genes chr3L_5_15390001 chr3L_15390001 RAL-105 734 chr3L 15406043 15406055 chr3L 15406126 15406137 4 82 0.5 3.5 2.0 1.3 94 chr3L 15406043 intergenic not near genes chr3L 15406090 intergenic not near genes chr3L 15406137 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-105 735 chr3L 15466040 15466139 chr3L 15466122 15466232 5 84 0.0 0.0 0.0 5.0 192 chr3L 15466040 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466232 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-105 736 chr3L 15711007 15711033 chr3L 15711313 15711339 8 305 1.0 0.5 0.8 4.4 332 chr3L 15711007 intergenic not near genes chr3L 15711173 intergenic not near genes chr3L 15711339 intergenic not near genes chr3L_8_15710001 chr3L_15710001 RAL-105 737 chr3L 15739263 15739288 chr3L 15739401 15739426 7 138 1.0 2.0 1.5 2.8 163 chr3L 15739263 intergenic not near genes chr3L 15739344 intergenic not near genes chr3L 15739426 intergenic not near genes chr3L_7_15735001 chr3L_15735001 RAL-105 738 chr3L 15756878 15756902 chr3L 15756961 15756983 9 82 7.0 0.0 3.5 2.0 105 chr3L 15756878 intergenic not near genes chr3L 15756930 intergenic not near genes chr3L 15756983 intergenic not near genes chr3L_9_15755001 chr3L_15755001 RAL-105 739 chr3L 15775836 15775862 chr3L 15775913 15775937 9 77 0.5 5.0 2.8 2.4 101 chr3L 15775836 intergenic not near genes chr3L 15775886 intergenic not near genes chr3L 15775937 intergenic not near genes chr3L_9_15775001 chr3L_15775001 RAL-105 740 chr3L 15832253 15832281 chr3L 15832334 15832362 8 81 4.0 1.5 2.8 2.1 109 chr3L 15832253 intergenic CG12713 +,dbo + chr3L 15832308 intergenic CG12713 +,dbo + chr3L 15832362 intergenic CG12713 +,dbo + chr3L_8_15830001 chr3L_15830001 RAL-105 741 chr3L 15840437 15840469 chr3L 15840525 15840554 5 86 0.0 3.0 1.5 2.0 117 chr3L 15840437 intron CG32150 - chr3L 15840496 intron CG32150 - chr3L 15840554 intron CG32150 - chr3L_5_15840001 chr3L_15840001 RAL-105 742 chr3L 15899226 15899260 chr3L 15899789 15899826 jockey 6 566 3.0 3.0 3.0 1.5 600 chr3L 15899226 intergenic pHCl - chr3L 15899526 intergenic pHCl - chr3L 15899826 intergenic sff - chr3L_6_15895001 chr3L_15895001 RAL-105 743 chr3L 15991315 15991333 chr3L 15991424 15991441 4 109 1.5 2.5 2.0 1.3 126 chr3L 15991315 3` UTR Hip14 + chr3L 15991378 3` UTR Hip14 + chr3L 15991441 3` UTR Hip14 + chr3L_4_15990001 chr3L_15990001 RAL-105 744 chr3L 16159271 16159299 chr3L 16159348 16159376 4 77 1.5 3.0 2.2 1.2 105 chr3L 16159271 intron CG5151 - chr3L 16159324 intron CG5151 - chr3L 16159376 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-105 745 chr3L 16162598 16162621 chr3L 16162682 16162705 4 84 2.5 3.5 3.0 1.0 107 chr3L 16162598 intron CG5151 - chr3L 16162652 intron CG5151 - chr3L 16162705 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-105 746 chr3L 16184106 16184131 chr3L 16188925 16188950 X-element 5 4819 0.5 1.0 0.8 2.8 4844 chr3L 16184106 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188950 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-105 747 chr3L 16236138 16236157 chr3L 16236217 16236238 4 76 0.5 3.5 2.0 1.3 100 chr3L 16236138 exon l(3)72Dp + chr3L 16236188 exon l(3)72Dp + chr3L 16236238 exon l(3)72Dp + chr3L_4_16235001 chr3L_16235001 RAL-105 748 chr3L 16340263 16340289 chr3L 16340387 16340413 6 124 2.0 2.5 2.2 1.9 150 chr3L 16340263 intron CG4998 + chr3L 16340338 intron CG4998 + chr3L 16340413 intron CG4998 + chr3L_6_16340001 chr3L_16340001 RAL-105 749 chr3L 16443851 16443875 chr3L 16446191 16446215 Doc 6 2340 1.0 2.5 1.8 2.1 2364 chr3L 16443851 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-105 750 chr3L 16493975 16493991 chr3L 16494492 16494508 jockey 7 517 6.0 1.0 3.5 1.6 533 chr3L 16493975 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494242 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494508 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-105 751 chr3L 16561108 16561140 chr3L 16561186 16561218 6 78 1.0 3.0 2.0 2.0 110 chr3L 16561108 intergenic not near genes chr3L 16561163 intergenic not near genes chr3L 16561218 intergenic not near genes chr3L_6_16560001 chr3L_16560001 RAL-105 752 chr3L 16764580 16764606 chr3L 16764672 16764712 4 100 2.0 0.0 1.0 2.0 132 chr3L 16764580 intergenic not near genes chr3L 16764646 intergenic not near genes chr3L 16764712 intergenic not near genes chr3L_4_16760001 chr3L_16760001 RAL-105 753 chr3L 16800578 16800607 chr3L 16800716 16800745 12 138 4.0 2.0 3.0 3.0 167 chr3L 16800578 intron CG9674 - chr3L 16800662 intron CG9674 - chr3L 16800745 intron CG9674 - chr3L_12_16800001 chr3L_16800001 RAL-105 754 chr3L 16873340 16873363 chr3L 16873445 16873468 4 105 3.5 3.0 3.2 1.0 128 chr3L 16873340 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873468 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-105 755 chr3L 16913715 16913741 chr3L 16913907 16913933 9 192 1.5 3.0 2.2 2.8 218 chr3L 16913715 intron Lmpt + chr3L 16913824 intron Lmpt + chr3L 16913933 intron Lmpt + chr3L_9_16910001 chr3L_16910001 RAL-105 756 chr3L 16945734 16945761 chr3L 16954886 16954893 roo 11 9148 4.0 0.0 2.0 3.7 9159 chr3L 16945734 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954893 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-105 757 chr3L 17003783 17003801 chr3L 17003860 17003877 4 76 1.5 1.5 1.5 1.6 94 chr3L 17003783 intron CG3764 - chr3L 17003830 intron CG3764 - chr3L 17003877 intron CG3764 - chr3L_4_17000001 chr3L_17000001 RAL-105 758 chr3L 17026789 17026818 chr3L 17026870 17026898 6 80 2.0 2.0 2.0 2.0 109 chr3L 17026789 exon Fit2 + chr3L 17026844 3` UTR Fit2 + chr3L 17026898 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-105 759 chr3L 17149169 17149185 chr3L 17149250 17149266 5 80 1.0 0.0 0.5 3.3 97 chr3L 17149169 intron Rbp6 - chr3L 17149218 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-105 760 chr3L 17272244 17272266 chr3L 17272377 17272399 5 133 2.0 2.0 2.0 1.7 155 chr3L 17272244 intergenic not near genes chr3L 17272322 intergenic not near genes chr3L 17272399 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-105 761 chr3L 17510736 17510764 chr3L 17510819 17510848 9 83 2.0 2.5 2.2 2.8 112 chr3L 17510736 exon Oatp74D + chr3L 17510792 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-105 762 chr3L 17516978 17517013 chr3L 17524536 17524571 412 8 7558 1.5 3.0 2.2 2.5 7593 chr3L 17516978 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_8_17520001 chr3L_17520001 RAL-105 763 chr3L 17654879 17654886 chr3L 17654969 17654976 5 90 2.5 3.0 2.8 1.3 97 chr3L 17654879 exon CG7484 + chr3L 17654928 intron CG7484 + chr3L 17654976 intron CG7484 + chr3L_5_17650001 chr3L_17650001 RAL-105 764 chr3L 17773209 17773238 chr3L 17773304 17773335 4 96 0.5 0.5 0.5 2.7 126 chr3L 17773209 intergenic not near genes chr3L 17773272 intergenic not near genes chr3L 17773335 intergenic not near genes chr3L_4_17770001 chr3L_17770001 RAL-105 765 chr3L 17789849 17789876 chr3L 17789925 17789952 4 76 0.5 1.5 1.0 2.0 103 chr3L 17789849 intergenic not near genes chr3L 17789900 intergenic not near genes chr3L 17789952 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-105 766 chr3L 17799565 17799580 chr3L 17799646 17799660 5 80 1.5 0.0 0.8 2.8 95 chr3L 17799565 intron NUCB1 - chr3L 17799612 intron NUCB1 - chr3L 17799660 intron NUCB1 - chr3L_5_17795001 chr3L_17795001 RAL-105 767 chr3L 17852811 17852845 chr3L 17852886 17852922 14 72 4.5 8.0 6.2 1.9 111 chr3L 17852811 exon CG5535 - chr3L 17852866 exon CG5535 - chr3L 17852922 exon CG5535 - chr3L_14_17850001 chr3L_17850001 RAL-105 768 chr3L 18000681 18000708 chr3L 18000758 18000785 5 77 2.0 1.5 1.8 1.8 104 chr3L 18000681 intron Eip75B - chr3L 18000733 intron Eip75B - chr3L 18000785 intron Eip75B - chr3L_5_18000001 chr3L_18000001 RAL-105 769 chr3L 18171862 18171881 chr3L 18171953 18171972 7 91 3.0 0.0 1.5 2.8 110 chr3L 18171862 intron W - chr3L 18171917 intron W - chr3L 18171972 intron W - chr3L_7_18170001 chr3L_18170001 RAL-105 770 chr3L 18221104 18221124 chr3L 18221184 18221205 4 81 0.0 2.5 1.2 1.8 101 chr3L 18221104 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221205 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-105 771 chr3L 18223163 18223185 chr3L 18223246 18223268 4 83 1.0 0.0 0.5 2.7 105 chr3L 18223163 intergenic not near genes chr3L 18223216 intergenic not near genes chr3L 18223268 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-105 772 chr3L 18248958 18248982 chr3L 18249056 18249080 5 98 0.0 1.5 0.8 2.8 122 chr3L 18248958 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249080 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-105 773 chr3L 18420070 18420096 chr3L 18420154 18420179 8 82 2.5 0.5 1.5 3.2 109 chr3L 18420070 intergenic not near genes chr3L 18420124 intergenic not near genes chr3L 18420179 intergenic not near genes chr3L_8_18420001 chr3L_18420001 RAL-105 774 chr3L 18514909 18514935 chr3L 18520099 18520126 BS 5 5191 1.5 1.5 1.5 2.0 5217 chr3L 18514909 intergenic not near genes chr3L 18517518 intergenic not near genes chr3L 18520126 intergenic not near genes chr3L_5_18515001 chr3L_18515001 RAL-105 775 chr3L 18721773 18721805 chr3L 18721863 18721896 5 91 1.0 0.0 0.5 3.3 123 chr3L 18721773 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721896 3` UTR CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-105 776 chr3L 18725268 18725283 chr3L 18725574 18725583 4 304 5.0 1.5 3.2 1.0 315 chr3L 18725268 intergenic not near genes chr3L 18725426 intergenic not near genes chr3L 18725583 intergenic not near genes chr3L_4_18725001 chr3L_18725001 RAL-105 777 chr3L 18772406 18772439 chr3L 18781087 18781120 roo 8 8681 1.5 2.0 1.8 2.9 8714 chr3L 18772406 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_8_18775001 chr3L_18775001 RAL-105 778 chr3L 19008835 19008858 chr3L 19009176 19009196 jockey 4 339 1.5 2.5 2.0 1.3 361 chr3L 19008835 intron nkd - chr3L 19009016 intron nkd - chr3L 19009196 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-105 779 chr3L 19115636 19115672 chr3L 19115813 19115851 BS 7 179 1.5 3.0 2.2 2.2 215 chr3L 19115636 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115851 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-105 780 chr3L 19117040 19117064 chr3L 19124487 19124511 mdg1 10 7446 2.5 1.0 1.8 3.6 7471 chr3L 19117040 intron CG14082 - chr3L 19120776 intron CG14082 - chr3L 19124511 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-105 781 chr3L 19152068 19152089 chr3L 19152148 19152169 4 80 1.0 1.5 1.2 1.8 101 chr3L 19152068 intron fz2 - chr3L 19152118 intron fz2 - chr3L 19152169 intron fz2 - chr3L_4_19150001 chr3L_19150001 RAL-105 782 chr3L 19244112 19244137 chr3L 19244190 19244215 8 75 0.0 3.5 1.8 2.9 103 chr3L 19244112 intergenic not near genes chr3L 19244164 intergenic not near genes chr3L 19244215 intergenic not near genes chr3L_8_19240001 chr3L_19240001 RAL-105 783 chr3L 19359026 19359050 chr3L 19359150 19359174 6 123 2.5 0.5 1.5 2.4 148 chr3L 19359026 intron CG32206 - chr3L 19359100 intron CG32206 - chr3L 19359174 intron CG32206 - chr3L_6_19355001 chr3L_19355001 RAL-105 784 chr3L 19457918 19457932 chr3L 19457995 19458010 5 78 2.5 2.0 2.2 1.6 92 chr3L 19457918 intergenic not near genes chr3L 19457964 intergenic not near genes chr3L 19458010 intergenic not near genes chr3L_5_19455001 chr3L_19455001 RAL-105 785 chr3L 19703848 19703873 chr3L 19704002 19704027 4 154 1.5 4.0 2.8 1.1 179 chr3L 19703848 intron serp - chr3L 19703938 intron serp - chr3L 19704027 intron serp - chr3L_4_19700001 chr3L_19700001 RAL-105 786 chr3L 19848505 19848535 chr3L 19857695 19857724 roo 5 9190 0.5 0.5 0.5 3.3 9219 chr3L 19848505 intron Papss + chr3L 19853114 intron Papss + chr3L 19857724 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-105 787 chr3L 19861825 19861853 chr3L 19863613 19863641 S-element 4 1788 1.5 1.0 1.2 1.8 1816 chr3L 19861825 5` UTR CR45433 + chr3L 19862733 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-105 788 chr3L 19933538 19933550 chr3L 19934360 19934371 4 822 2.0 2.0 2.0 1.3 833 chr3L 19933538 intergenic CR45678 + chr3L 19933954 5` UTR CR45678 + chr3L 19934371 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-105 789 chr3L 20081011 20081019 chr3L 20081109 20081115 5 97 4.0 4.0 4.0 1.0 104 chr3L 20081011 intron sNPF-R - chr3L 20081063 intron sNPF-R - chr3L 20081115 intron sNPF-R - chr3L_5_20080001 chr3L_20080001 RAL-105 790 chr3L 20143081 20143114 chr3L 20143161 20143194 8 80 0.0 2.0 1.0 4.0 113 chr3L 20143081 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143194 intergenic not near genes chr3L_8_20140001 chr3L_20140001 RAL-105 791 chr3L 20148282 20148317 chr3L 20148372 20148407 8 89 0.5 1.0 0.8 4.4 125 chr3L 20148282 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148407 intergenic not near genes chr3L_8_20145001 chr3L_20145001 RAL-105 792 chr3L 20159569 20159577 chr3L 20159881 20159890 6 312 4.0 4.5 4.2 1.2 321 chr3L 20159569 intron CG42674 - chr3L 20159730 intron CG42674 - chr3L 20159890 intron CG42674 - chr3L_6_20155001 chr3L_20155001 RAL-105 793 chr3L 20257337 20257363 chr3L 20258457 20258483 pogo 8 1120 1.0 2.5 1.8 2.9 1146 chr3L 20257337 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258483 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-105 794 chr3L 20283681 20283707 chr3L 20283765 20283791 4 83 1.0 1.0 1.0 2.0 110 chr3L 20283681 intron gogo - chr3L 20283736 intron gogo - chr3L 20283791 intron gogo - chr3L_4_20280001 chr3L_20280001 RAL-105 795 chr3L 20590064 20590095 chr3L 20590603 20590611 412 6 530 2.5 2.0 2.2 1.9 547 chr3L 20590064 intergenic not near genes chr3L 20590338 intergenic not near genes chr3L 20590611 intergenic not near genes chr3L_6_20590001 chr3L_20590001 RAL-105 796 chr3L 20752114 20752121 chr3L 20752192 20752199 7 78 1.0 1.0 1.0 3.5 85 chr3L 20752114 intergenic not near genes chr3L 20752156 intergenic not near genes chr3L 20752199 intergenic not near genes chr3L_7_20750001 chr3L_20750001 RAL-105 797 chr3L 20752128 20752142 chr3L 20752190 20752220 6 75 0.5 1.0 0.8 3.3 92 chr3L 20752128 intergenic not near genes chr3L 20752174 intergenic not near genes chr3L 20752220 intergenic not near genes chr3L_6_20750001 chr3L_20750001 RAL-105 798 chr3L 20821294 20821309 chr3L 20824763 20824778 NOF 5 3468 2.0 4.5 3.2 1.2 3484 chr3L 20821294 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824778 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-105 799 chr3L 20948675 20948690 chr3L 20948766 20948781 5 91 1.5 4.0 2.8 1.3 106 chr3L 20948675 intron fng - chr3L 20948728 intron fng - chr3L 20948781 intron fng - chr3L_5_20945001 chr3L_20945001 RAL-105 800 chr3L 21014914 21014948 chr3L 21023394 21023418 Tirant 7 8477 2.5 1.0 1.8 2.5 8504 chr3L 21014914 intron skd - chr3L 21019166 intron skd - chr3L 21023418 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-105 801 chr3L 21067953 21067978 chr3L 21068033 21068058 15 80 3.5 5.0 4.2 2.9 105 chr3L 21067953 intron siz + chr3L 21068006 intron siz + chr3L 21068058 intron siz + chr3L_15_21065001 chr3L_21065001 RAL-105 802 chr3L 21082231 21082240 chr3L 21082308 21082318 4 78 1.0 4.0 2.5 1.1 87 chr3L 21082231 intron ko - chr3L 21082274 intron ko - chr3L 21082318 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-105 803 chr3L 21158595 21158629 chr3L 21158671 21158685 9 69 0.5 2.5 1.5 3.6 90 chr3L 21158595 intron Ac78C - chr3L 21158640 intron Ac78C - chr3L 21158685 intron Ac78C - chr3L_9_21155001 chr3L_21155001 RAL-105 804 chr3L 21395145 21395177 chr3L 21395233 21395263 4 88 3.5 2.5 3.0 1.0 118 chr3L 21395145 intron rgn + chr3L 21395204 intron rgn + chr3L 21395263 intron rgn + chr3L_4_21395001 chr3L_21395001 RAL-105 805 chr3L 21498832 21498844 chr3L 21500468 21500480 1360 4 1636 4.0 2.0 3.0 1.0 1648 chr3L 21498832 intron Glg1 - chr3L 21499656 intron Glg1 - chr3L 21500480 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-105 806 chr3L 21749323 21749352 chr3L 21754483 21754503 Doc 10 5158 1.0 4.5 2.8 2.6 5180 chr3L 21749323 intron Syn1 - chr3L 21751913 intron Syn1 - chr3L 21754503 intron Syn1 - chr3L_10_21750001 chr3L_21750001 RAL-105 807 chr3L 21799942 21799970 chr3L 21800027 21800053 8 85 0.5 1.0 0.8 4.4 111 chr3L 21799942 intergenic not near genes chr3L 21799998 intergenic not near genes chr3L 21800053 intergenic not near genes chr3L_8_21795001 chr3L_21795001 RAL-105 808 chr3L 21828969 21828971 chr3L 21829031 21829044 4 76 3.5 4.5 4.0 0.8 75 chr3L 21828969 intergenic CR43309 -,CG32448 - chr3L 21829006 intergenic CR43309 - chr3L 21829044 intergenic CR43309 - chr3L_4_21825001 chr3L_21825001 RAL-105 809 chr3L 21847436 21847461 chr3L 21847532 21847548 5 93 1.0 0.5 0.8 2.8 112 chr3L 21847436 intron mub + chr3L 21847492 intron mub + chr3L 21847548 intron mub + chr3L_5_21845001 chr3L_21845001 RAL-105 810 chr3L 21868571 21868595 chr3L 21868661 21868685 4 90 1.5 2.5 2.0 1.3 114 chr3L 21868571 intron mub + chr3L 21868628 intron mub + chr3L 21868685 intron mub + chr3L_4_21865001 chr3L_21865001 RAL-105 811 chr3L 21872427 21872452 chr3L 21872505 21872531 5 79 1.0 1.5 1.2 2.3 104 chr3L 21872427 intron mub + chr3L 21872479 intron mub + chr3L 21872531 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-105 812 chr3L 21950338 21950350 chr3L 21950415 21950426 7 76 5.5 5.0 5.2 1.1 88 chr3L 21950338 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950426 intron CG7448 + chr3L_7_21950001 chr3L_21950001 RAL-105 813 chr3L 22006759 22006783 chr3L 22006883 22006907 5 124 3.0 0.0 1.5 2.0 148 chr3L 22006759 intergenic not near genes chr3L 22006833 intergenic not near genes chr3L 22006907 intergenic not near genes chr3L_5_22005001 chr3L_22005001 RAL-105 814 chr3L 22008848 22008871 chr3L 22008924 22008942 11 76 3.0 2.0 2.5 3.1 94 chr3L 22008848 intergenic not near genes chr3L 22008895 intergenic not near genes chr3L 22008942 intergenic not near genes chr3L_11_22005001 chr3L_22005001 RAL-105 815 chr3L 22122173 22122199 chr3L 22122514 22122539 9 343 2.5 4.5 3.5 2.0 366 chr3L 22122173 5` UTR CR45236 + chr3L 22122356 intergenic CR45236 +,CR45235 + chr3L 22122539 intergenic CR45235 +,CR45236 + chr3L_9_22120001 chr3L_22120001 RAL-105 816 chr3L 22241309 22241311 chr3L 22241387 22241392 4 80 4.0 4.5 4.2 0.8 83 chr3L 22241309 intron olf413 + chr3L 22241350 intron olf413 + chr3L 22241392 intron olf413 + chr3L_4_22240001 chr3L_22240001 RAL-105 817 chr3L 22241312 22241321 chr3L 22241386 22241398 5 78 2.5 4.0 3.2 1.2 86 chr3L 22241312 intron olf413 + chr3L 22241355 intron olf413 + chr3L 22241398 intron olf413 + chr3L_5_22240001 chr3L_22240001 RAL-105 818 chr3L 22271135 22271161 chr3L 22271262 22271288 4 127 2.5 1.5 2.0 1.3 153 chr3L 22271135 intron Csp + chr3L 22271212 intron Csp + chr3L 22271288 intron Csp + chr3L_4_22270001 chr3L_22270001 RAL-105 819 chr3L 22447214 22447232 chr3L 22447305 22447323 5 91 1.5 2.0 1.8 1.8 109 chr3L 22447214 intergenic not near genes chr3L 22447268 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-105 820 chr3L 22577628 22577645 chr3L 22582416 22582432 Doc 6 4787 3.5 4.0 3.8 1.2 4804 chr3L 22577628 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582432 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-105 821 chr3L 22617188 22617221 chr3L 22624640 22624665 blood 5 7444 2.0 2.0 2.0 1.7 7477 chr3L 22617188 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624665 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-105 822 chr3L 22853465 22853718 chr3L 22853552 22853803 12 86 2.5 1.0 1.8 4.3 338 chr3L 22853465 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853634 5` UTR CR43426 + chr3L 22853803 5` UTR CR43426 + chr3L_12_22850001 chr3L_22850001 RAL-105 823 chr3L 22909018 22909051 chr3L 22909109 22909142 13 91 3.5 2.5 3.0 3.2 124 chr3L 22909018 intergenic CR45661 + chr3L 22909080 intergenic CR45661 + chr3L 22909142 intergenic CR45661 + chr3L_13_22905001 chr3L_22905001 RAL-105 824 chr3L 23468024 23468047 chr3L 23468110 23468133 4 86 10.0 13.0 11.5 0.3 109 chr3L 23468024 intergenic not near genes chr3L 23468078 intergenic not near genes chr3L 23468133 intergenic not near genes chr3L_4_23465001 chr3L_23465001 RAL-105 825 chr3L 23635681 23635714 chr3L 23635786 23635819 7 105 5.0 3.5 4.2 1.3 138 chr3L 23635681 intron AGO3 + chr3L 23635750 intron AGO3 + chr3L 23635819 intron AGO3 + chr3L_7_23635001 chr3L_23635001 RAL-105 826 chr3L 24036800 24036813 chr3L 24036891 24036904 5 91 0.5 4.0 2.2 1.6 104 chr3L 24036800 intergenic not near genes chr3L 24036852 intergenic not near genes chr3L 24036904 intergenic not near genes chr3L_5_24035001 chr3L_24035001 RAL-105 827 chr3L 24054468 24054483 chr3L 24054683 24054698 5 214 1.5 3.5 2.5 1.4 230 chr3L 24054468 intergenic not near genes chr3L 24054583 intergenic not near genes chr3L 24054698 intergenic not near genes chr3L_5_24050001 chr3L_24050001 RAL-105 828 chr3L 24168786 24168817 chr3L 24176114 24176125 ZAM 9 7321 5.0 3.0 4.0 1.8 7339 chr3L 24168786 intron Snap25 + chr3L 24172456 intron Snap25 + chr3L 24176125 intron Snap25 + chr3L_9_24170001 chr3L_24170001 RAL-105 829 chr3L 24363237 24363267 chr3L 24363315 24363344 4 78 1.5 1.5 1.5 1.6 107 chr3L 24363237 intron nvd + chr3L 24363290 intron nvd + chr3L 24363344 intron nvd + chr3L_4_24360001 chr3L_24360001 RAL-105 830 chr3L 25354745 25354780 chr3L 25355024 25355059 8 275 4.5 2.0 3.2 1.9 314 chr3L 25354745 intergenic not near genes chr3L 25354902 intergenic not near genes chr3L 25355059 intergenic not near genes chr3L_8_25350001 chr3L_25350001 RAL-105 831 chr3L 25514620 25514637 chr3L 25514942 25514960 4 323 2.5 4.0 3.2 1.0 340 chr3L 25514620 intron CG41343 - chr3L 25514790 intron CG41343 - chr3L 25514960 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-105 832 chr3L 27167945 27167983 chr3L 27168065 27168103 18 118 4.5 3.0 3.8 3.8 158 chr3L 27167945 intergenic not near genes chr3L 27168024 intergenic not near genes chr3L 27168103 intergenic not near genes chr3L_18_27165001 chr3L_27165001 RAL-105 833 chr3L 27390696 27390708 chr3L 27390773 27390787 5 78 42.0 36.5 39.2 0.1 91 chr3L 27390696 intron Dbp80 + chr3L 27390742 intron Dbp80 + chr3L 27390787 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-105 834 chr3L 27727642 27727654 chr3L 27728749 27728760 G-element 5 1106 4.5 1.0 2.8 1.3 1118 chr3L 27727642 intergenic not near genes chr3L 27728201 intergenic not near genes chr3L 27728760 intergenic not near genes chr3L_5_27725001 chr3L_27725001 RAL-105 835 chr3R 444056 444084 chr3R 444138 444166 5 81 9.0 8.0 8.5 0.5 110 chr3R 444056 intergenic not near genes chr3R 444111 intergenic not near genes chr3R 444166 intergenic not near genes chr3R_5_440001 chr3R_440001 RAL-105 836 chr3R 892055 892059 chr3R 892269 892292 4 228 2.5 2.5 2.5 1.1 237 chr3R 892055 intron CG42621 + chr3R 892174 intron CG42621 + chr3R 892292 intron CG42621 + chr3R_4_890001 chr3R_890001 RAL-105 837 chr3R 1021767 1021788 chr3R 1022021 1022043 5 254 10.5 7.0 8.8 0.5 276 chr3R 1021767 intergenic not near genes chr3R 1021905 intergenic not near genes chr3R 1022043 intergenic not near genes chr3R_5_1020001 chr3R_1020001 RAL-105 838 chr3R 1443437 1443453 chr3R 1443511 1443529 7 75 1.5 1.0 1.2 3.2 92 chr3R 1443437 intron CG40155 + chr3R 1443483 intron CG40155 + chr3R 1443529 intron CG40155 + chr3R_7_1440001 chr3R_1440001 RAL-105 839 chr3R 2534144 2534156 chr3R 2541713 2541725 4 7569 15.0 11.0 13.0 0.3 7581 chr3R 2534144 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541725 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-105 840 chr3R 2534157 2534162 chr3R 2541704 2541731 5 7558 14.5 8.5 11.5 0.4 7574 chr3R 2534157 intergenic not near genes chr3R 2537944 intergenic not near genes chr3R 2541731 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-105 841 chr3R 4063812 4063832 chr3R 4069092 4069102 5 5276 2.0 9.0 5.5 0.8 5290 chr3R 4063812 intergenic not near genes chr3R 4066457 intergenic not near genes chr3R 4069102 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-105 842 chr3R 4195478 4195496 chr3R 4195786 4195804 4 308 3.0 1.5 2.2 1.2 326 chr3R 4195478 intergenic not near genes chr3R 4195641 intergenic not near genes chr3R 4195804 intergenic not near genes chr3R_4_4195001 chr3R_4195001 RAL-105 843 chr3R 4206074 4206098 chr3R 4211649 4211673 mdg3 6 5575 0.5 0.0 0.2 5.0 5599 chr3R 4206074 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211673 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-105 844 chr3R 4366758 4366786 chr3R 4375141 4375169 roo 4 8383 2.5 2.0 2.2 1.2 8411 chr3R 4366758 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375169 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-105 845 chr3R 4593471 4593502 chr3R 4593553 4593582 9 81 1.5 1.0 1.2 4.1 111 chr3R 4593471 intergenic not near genes chr3R 4593526 intergenic not near genes chr3R 4593582 intergenic not near genes chr3R_9_4590001 chr3R_4590001 RAL-105 846 chr3R 4609548 4609581 chr3R 4610710 4610739 1360 9 1162 2.0 2.5 2.2 2.8 1191 chr3R 4609548 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610739 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-105 847 chr3R 4753242 4753267 chr3R 4757545 4757570 F-element 9 4303 2.5 5.5 4.0 1.8 4328 chr3R 4753242 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757570 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-105 848 chr3R 4759721 4759751 chr3R 4761218 4761245 hopper2 13 1496 2.0 4.5 3.2 3.1 1524 chr3R 4759721 intron,intron atms +,CG44098 - chr3R 4760483 intron,intron atms +,CG44098 - chr3R 4761245 intron,intron atms +,CG44098 - chr3R_13_4760001 chr3R_4760001 RAL-105 849 chr3R 4769164 4769185 chr3R 4769240 4769263 8 78 1.5 2.0 1.8 2.9 99 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-105 850 chr3R 4861569 4861589 chr3R 4861650 4861669 10 80 4.0 4.0 4.0 2.0 100 chr3R 4861569 intron opa + chr3R 4861619 intron opa + chr3R 4861669 intron opa + chr3R_10_4860001 chr3R_4860001 RAL-105 851 chr3R 4887477 4887510 chr3R 4894854 4894887 rover 5 7377 1.5 1.5 1.5 2.0 7410 chr3R 4887477 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894887 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-105 852 chr3R 5236218 5236233 chr3R 5236346 5236360 4 128 1.0 3.5 2.2 1.2 142 chr3R 5236218 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236289 3` UTR rtp - chr3R 5236360 3` UTR rtp - chr3R_4_5235001 chr3R_5235001 RAL-105 853 chr3R 5278091 5278121 chr3R 5278168 5278202 7 80 2.5 1.0 1.8 2.5 111 chr3R 5278091 intron mtd - chr3R 5278146 intron mtd - chr3R 5278202 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-105 854 chr3R 5338399 5338422 chr3R 5343576 5343587 Rt1c 8 5174 2.0 8.5 5.2 1.3 5188 chr3R 5338399 intron mtd - chr3R 5340993 intron mtd - chr3R 5343587 intron mtd - chr3R_8_5340001 chr3R_5340001 RAL-105 855 chr3R 5445963 5445991 chr3R 5452422 5452451 Burdock 4 6458 0.0 3.5 1.8 1.4 6488 chr3R 5445963 intron CG14669 + chr3R 5449207 intron CG14669 + chr3R 5452451 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-105 856 chr3R 5626464 5626490 chr3R 5626548 5626581 10 89 3.0 3.5 3.2 2.4 117 chr3R 5626464 intergenic not near genes chr3R 5626522 intergenic not near genes chr3R 5626581 intergenic not near genes chr3R_10_5625001 chr3R_5625001 RAL-105 857 chr3R 5746021 5746046 chr3R 5746261 5746287 pogo 4 240 3.0 3.0 3.0 1.0 266 chr3R 5746021 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-105 858 chr3R 5896966 5896995 chr3R 5897325 5897354 4 358 2.0 2.0 2.0 1.3 388 chr3R 5896966 intron CG34113 - chr3R 5897160 intron CG34113 - chr3R 5897354 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-105 859 chr3R 5927560 5927591 chr3R 5927799 5927831 pogo 8 239 2.0 0.0 1.0 4.0 271 chr3R 5927560 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-105 860 chr3R 5942476 5942497 chr3R 5942574 5942595 4 98 1.5 1.5 1.5 1.6 119 chr3R 5942476 intron CG34113 - chr3R 5942536 intron CG34113 - chr3R 5942595 intron CG34113 - chr3R_4_5940001 chr3R_5940001 RAL-105 861 chr3R 6015972 6015995 chr3R 6024453 6024476 Tirant 7 8478 2.5 3.0 2.8 1.8 8504 chr3R 6015972 intergenic not near genes chr3R 6020224 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_7_6020001 chr3R_6020001 RAL-105 862 chr3R 6042576 6042611 chr3R 6042673 6042708 9 97 2.0 0.5 1.2 4.1 132 chr3R 6042576 intergenic not near genes chr3R 6042642 intergenic not near genes chr3R 6042708 intergenic not near genes chr3R_9_6040001 chr3R_6040001 RAL-105 863 chr3R 6141917 6141950 chr3R 6141994 6142024 9 74 4.0 5.5 4.8 1.6 107 chr3R 6141917 intergenic not near genes chr3R 6141970 intergenic not near genes chr3R 6142024 intergenic not near genes chr3R_9_6140001 chr3R_6140001 RAL-105 864 chr3R 6158513 6158540 chr3R 6167090 6167122 Tirant 4 8581 3.5 3.0 3.2 1.0 8609 chr3R 6158513 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167122 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 RAL-105 865 chr3R 6175175 6175204 chr3R 6182447 6182466 HMS-Beagle2 4 7267 2.0 0.5 1.2 1.8 7291 chr3R 6175175 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182466 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-105 866 chr3R 6206288 6206320 chr3R 6206501 6206519 BS 14 213 4.0 3.0 3.5 3.1 231 chr3R 6206288 exon Osi24 + chr3R 6206404 intron Osi24 + chr3R 6206519 intron Osi24 + chr3R_14_6205001 chr3R_6205001 RAL-105 867 chr3R 6248584 6248584 chr3R 6248722 6248753 6 142 13.0 21.0 17.0 0.3 169 chr3R 6248584 intergenic Osi7 + chr3R 6248668 intergenic Osi7 + chr3R 6248753 intergenic Osi7 + chr3R_6_6245001 chr3R_6245001 RAL-105 868 chr3R 6538203 6538227 chr3R 6538301 6538325 10 97 5.0 2.0 3.5 2.2 122 chr3R 6538203 intron dpr11 - chr3R 6538264 intron dpr11 - chr3R 6538325 exon dpr11 - chr3R_10_6535001 chr3R_6535001 RAL-105 869 chr3R 6550324 6550350 chr3R 6550405 6550431 10 79 2.5 5.0 3.8 2.1 107 chr3R 6550324 intron dpr11 - chr3R 6550378 intron dpr11 - chr3R 6550431 intron dpr11 - chr3R_10_6550001 chr3R_6550001 RAL-105 870 chr3R 6551113 6551141 chr3R 6551207 6551235 10 94 3.5 3.5 3.5 2.2 122 chr3R 6551113 intron dpr11 - chr3R 6551174 intron dpr11 - chr3R 6551235 intron dpr11 - chr3R_10_6550001 chr3R_6550001 RAL-105 871 chr3R 6639913 6639927 chr3R 6639991 6640005 4 78 7.0 0.0 3.5 0.9 92 chr3R 6639913 intergenic not near genes chr3R 6639959 intergenic not near genes chr3R 6640005 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-105 872 chr3R 6698007 6698033 chr3R 6698086 6698112 6 79 0.5 1.0 0.8 3.3 105 chr3R 6698007 intergenic not near genes chr3R 6698060 intergenic not near genes chr3R 6698112 intergenic not near genes chr3R_6_6695001 chr3R_6695001 RAL-105 873 chr3R 6780452 6780476 chr3R 6780535 6780557 4 82 2.0 0.0 1.0 2.0 105 chr3R 6780452 intergenic not near genes chr3R 6780504 intergenic not near genes chr3R 6780557 intergenic not near genes chr3R_4_6780001 chr3R_6780001 RAL-105 874 chr3R 6891248 6891266 chr3R 6891324 6891342 4 76 2.0 2.0 2.0 1.3 94 chr3R 6891248 intergenic not near genes chr3R 6891295 intergenic not near genes chr3R 6891342 intergenic not near genes chr3R_4_6890001 chr3R_6890001 RAL-105 875 chr3R 7012203 7012235 chr3R 7012281 7012313 7 76 1.0 4.0 2.5 2.0 110 chr3R 7012203 intergenic not near genes chr3R 7012258 intergenic not near genes chr3R 7012313 intergenic not near genes chr3R_7_7010001 chr3R_7010001 RAL-105 876 chr3R 7051131 7051153 chr3R 7051210 7051232 4 79 1.0 4.0 2.5 1.1 101 chr3R 7051131 intergenic not near genes chr3R 7051182 intergenic not near genes chr3R 7051232 intergenic not near genes chr3R_4_7050001 chr3R_7050001 RAL-105 877 chr3R 7103928 7103954 chr3R 7104027 7104053 6 99 4.0 2.0 3.0 1.5 125 chr3R 7103928 intron Alh - chr3R 7103990 intron Alh - chr3R 7104053 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-105 878 chr3R 7206879 7206898 chr3R 7206963 7206987 12 87 2.5 2.5 2.5 3.4 108 chr3R 7206879 intergenic CG1288 - chr3R 7206933 intergenic CG1288 - chr3R 7206987 intergenic CG1288 - chr3R_12_7205001 chr3R_7205001 RAL-105 879 chr3R 7297570 7297602 chr3R 7297654 7297686 10 83 3.0 1.5 2.2 3.1 116 chr3R 7297570 intron rn - chr3R 7297628 intron rn - chr3R 7297686 intron rn - chr3R_10_7295001 chr3R_7295001 RAL-105 880 chr3R 7373008 7373023 chr3R 7373081 7373093 4 75 5.0 4.5 4.8 0.7 85 chr3R 7373008 intergenic not near genes chr3R 7373050 intergenic not near genes chr3R 7373093 intergenic not near genes chr3R_4_7370001 chr3R_7370001 RAL-105 881 chr3R 7464695 7464716 chr3R 7464781 7464802 6 86 3.0 3.0 3.0 1.5 107 chr3R 7464695 intergenic not near genes chr3R 7464748 intergenic not near genes chr3R 7464802 intergenic not near genes chr3R_6_7460001 chr3R_7460001 RAL-105 882 chr3R 7556939 7556966 chr3R 7557031 7557059 7 93 2.0 2.5 2.2 2.2 120 chr3R 7556939 intergenic not near genes chr3R 7556999 intergenic not near genes chr3R 7557059 intergenic not near genes chr3R_7_7555001 chr3R_7555001 RAL-105 883 chr3R 7621549 7621564 chr3R 7621638 7621654 4 90 0.0 5.5 2.8 1.1 105 chr3R 7621549 intron CG34127 - chr3R 7621602 intron CG34127 - chr3R 7621654 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-105 884 chr3R 7677934 7677944 chr3R 7678047 7678057 4 113 0.0 2.5 1.2 1.8 123 chr3R 7677934 intron Nlg1 + chr3R 7677996 intron Nlg1 + chr3R 7678057 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-105 885 chr3R 7724441 7724477 chr3R 7724531 7724558 11 85 1.5 1.5 1.5 4.4 117 chr3R 7724441 3` UTR CG2616 + chr3R 7724500 3` UTR CG2616 + chr3R 7724558 3` UTR CG2616 + chr3R_11_7720001 chr3R_7720001 RAL-105 886 chr3R 7744935 7744956 chr3R 7745200 7745202 7 259 4.0 3.0 3.5 1.6 267 chr3R 7744935 intergenic not near genes chr3R 7745068 intergenic not near genes chr3R 7745202 intergenic not near genes chr3R_7_7745001 chr3R_7745001 RAL-105 887 chr3R 7814034 7814064 chr3R 7814194 7814222 5 159 1.0 1.5 1.2 2.3 188 chr3R 7814034 intergenic CG34384 + chr3R 7814128 intergenic CG34384 + chr3R 7814222 intergenic CG34384 + chr3R_5_7810001 chr3R_7810001 RAL-105 888 chr3R 7840931 7840959 chr3R 7841076 7841105 4 146 1.0 2.0 1.5 1.6 174 chr3R 7840931 intron CG34384 + chr3R 7841018 intron CG34384 + chr3R 7841105 intron CG34384 + chr3R_4_7840001 chr3R_7840001 RAL-105 889 chr3R 7944050 7944079 chr3R 7944222 7944251 7 167 2.5 2.5 2.5 2.0 201 chr3R 7944050 intron dsx - chr3R 7944150 intron dsx - chr3R 7944251 intron dsx - chr3R_7_7940001 chr3R_7940001 RAL-105 890 chr3R 7955938 7955959 chr3R 7956014 7956035 10 77 2.0 1.5 1.8 3.6 97 chr3R 7955938 intron dsx - chr3R 7955986 intron dsx - chr3R 7956035 intron dsx - chr3R_10_7955001 chr3R_7955001 RAL-105 891 chr3R 8094406 8094440 chr3R 8099711 8099745 Transpac 6 5305 0.5 2.0 1.2 2.7 5339 chr3R 8094406 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099745 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-105 892 chr3R 8101763 8101783 chr3R 8104846 8104866 G2 4 3083 3.5 0.5 2.0 1.3 3103 chr3R 8101763 exon CG7900 + chr3R 8103314 intron CG7900 + chr3R 8104866 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-105 893 chr3R 8207554 8207567 chr3R 8208399 8208411 F-element 6 844 3.0 2.0 2.5 1.7 857 chr3R 8207554 intergenic not near genes chr3R 8207982 intergenic not near genes chr3R 8208411 intergenic not near genes chr3R_6_8205001 chr3R_8205001 RAL-105 894 chr3R 8326858 8326880 chr3R 8326960 8326982 6 102 1.5 2.0 1.8 2.1 124 chr3R 8326858 intron Poxm - chr3R 8326920 intron Poxm - chr3R 8326982 intron Poxm - chr3R_6_8325001 chr3R_8325001 RAL-105 895 chr3R 8339246 8339247 chr3R 21907534 21907536 21 13568288 14.0 12.0 13.0 1.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_21_15120001 chr3R_15120001 RAL-105 896 chr3R 8403007 8403039 chr3R 8412173 8412204 roo 14 9164 3.5 4.5 4.0 2.8 9197 chr3R 8403007 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412204 intron CG45263 - chr3R_14_8405001 chr3R_8405001 RAL-105 897 chr3R 8420177 8420178 chr3R 8420348 8420369 6 183 3.0 2.0 2.5 1.7 192 chr3R 8420177 intron,exon CG45263 -,Obp85a - chr3R 8420273 intron,exon CG45263 -,Obp85a - chr3R 8420369 intron,intron CG45263 -,Obp85a - chr3R_6_8420001 chr3R_8420001 RAL-105 898 chr3R 8570477 8570509 chr3R 8575112 8575139 HMS-Beagle 8 4634 2.0 2.0 2.0 2.7 4662 chr3R 8570477 intergenic not near genes chr3R 8572808 intergenic not near genes chr3R 8575139 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-105 899 chr3R 8707361 8707372 chr3R 8709801 8709813 jockey 7 2441 6.0 4.0 5.0 1.2 2452 chr3R 8707361 intergenic not near genes chr3R 8708587 intergenic not near genes chr3R 8709813 intergenic not near genes chr3R_7_8705001 chr3R_8705001 RAL-105 900 chr3R 8741602 8741625 chr3R 8741983 8742006 7 381 1.5 4.5 3.0 1.8 404 chr3R 8741602 intron CG9801 - chr3R 8741804 intron CG9801 - chr3R 8742006 intron CG9801 - chr3R_7_8740001 chr3R_8740001 RAL-105 901 chr3R 8771083 8771109 chr3R 8771219 8771245 5 136 2.0 1.0 1.5 2.0 162 chr3R 8771083 3` UTR CG8236 + chr3R 8771164 intergenic CG8236 +,CG13318 - chr3R 8771245 3` UTR CG13318 - chr3R_5_8770001 chr3R_8770001 RAL-105 902 chr3R 9101842 9101869 chr3R 9101940 9101967 6 98 0.5 1.5 1.0 3.0 125 chr3R 9101842 intron pum - chr3R 9101904 intron pum - chr3R 9101967 intron pum - chr3R_6_9100001 chr3R_9100001 RAL-105 903 chr3R 9142796 9142809 chr3R 9142955 9142967 5 158 1.5 3.0 2.2 1.6 171 chr3R 9142796 intron pum - chr3R 9142882 intron pum - chr3R 9142967 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-105 904 chr3R 9203843 9203854 chr3R 9203930 9203933 4 85 2.5 2.5 2.5 1.1 90 chr3R 9203843 intron pum - chr3R 9203888 intron pum - chr3R 9203933 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-105 905 chr3R 9204249 9204280 chr3R 9204334 9204367 8 84 2.5 2.5 2.5 2.3 118 chr3R 9204249 intron pum - chr3R 9204308 intron pum - chr3R 9204367 intron pum - chr3R_8_9200001 chr3R_9200001 RAL-105 906 chr3R 9270540 9270556 chr3R 9270617 9270632 4 77 2.0 3.0 2.5 1.1 92 chr3R 9270540 intergenic Vps16A + chr3R 9270586 intergenic Vps16A + chr3R 9270632 intergenic Vps16A + chr3R_4_9270001 chr3R_9270001 RAL-105 907 chr3R 9278778 9278808 chr3R 9284038 9284057 Rt1a 10 5258 1.0 1.5 1.2 4.5 5279 chr3R 9278778 intergenic not near genes chr3R 9281418 intergenic not near genes chr3R 9284057 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-105 908 chr3R 9284358 9284371 chr3R 9284442 9284467 4 93 2.5 1.0 1.8 1.4 109 chr3R 9284358 intergenic not near genes chr3R 9284412 intergenic not near genes chr3R 9284467 intergenic not near genes chr3R_4_9280001 chr3R_9280001 RAL-105 909 chr3R 9319573 9319600 chr3R 9320008 9320035 jockey 5 435 2.0 2.5 2.2 1.6 462 chr3R 9319573 intron CG8861 - chr3R 9319804 intron CG8861 - chr3R 9320035 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-105 910 chr3R 9620176 9620198 chr3R 9620306 9620328 11 130 3.0 3.5 3.2 2.6 152 chr3R 9620176 intron CG8312 + chr3R 9620252 intron CG8312 + chr3R 9620328 intron CG8312 + chr3R_11_9620001 chr3R_9620001 RAL-105 911 chr3R 9702572 9702596 chr3R 9702650 9702674 5 77 4.5 3.5 4.0 1.0 102 chr3R 9702572 intron Unc-115a - chr3R 9702623 intron Unc-115a - chr3R 9702674 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-105 912 chr3R 9829410 9829435 chr3R 9829495 9829520 6 85 2.5 0.0 1.2 2.7 110 chr3R 9829410 intron Teh1 - chr3R 9829465 intron Teh1 - chr3R 9829520 intron Teh1 - chr3R_6_9825001 chr3R_9825001 RAL-105 913 chr3R 9924399 9924415 chr3R 9924477 9924490 6 78 1.0 1.5 1.2 2.7 91 chr3R 9924399 intron Glut4EF + chr3R 9924444 intron Glut4EF + chr3R 9924490 intron Glut4EF + chr3R_6_9920001 chr3R_9920001 RAL-105 914 chr3R 9937095 9937100 chr3R 9937153 9937160 4 65 2.5 2.0 2.2 1.2 65 chr3R 9937095 intron Glut4EF + chr3R 9937128 intron Glut4EF + chr3R 9937160 intron Glut4EF + chr3R_4_9935001 chr3R_9935001 RAL-105 915 chr3R 9942316 9942329 chr3R 9942395 9942406 6 78 4.5 1.0 2.8 1.6 90 chr3R 9942316 intron Glut4EF + chr3R 9942361 intron Glut4EF + chr3R 9942406 intron Glut4EF + chr3R_6_9940001 chr3R_9940001 RAL-105 916 chr3R 10099308 10099332 chr3R 10099389 10099412 6 80 0.5 2.5 1.5 2.4 104 chr3R 10099308 5` UTR CR43459 + chr3R 10099360 5` UTR CR43459 + chr3R 10099412 5` UTR CR43459 + chr3R_6_10095001 chr3R_10095001 RAL-105 917 chr3R 10227251 10227277 chr3R 10227345 10227369 8 91 1.5 1.5 1.5 3.2 118 chr3R 10227251 intron CG42795 + chr3R 10227310 intron CG42795 + chr3R 10227369 intron CG42795 + chr3R_8_10225001 chr3R_10225001 RAL-105 918 chr3R 10277135 10277164 chr3R 10277212 10277244 13 79 1.0 1.0 1.0 6.5 109 chr3R 10277135 intron CG43143 + chr3R 10277190 intron CG43143 + chr3R 10277244 intron CG43143 + chr3R_13_10275001 chr3R_10275001 RAL-105 919 chr3R 10320872 10320900 chr3R 10321097 10321124 5 225 0.5 0.5 0.5 3.3 252 chr3R 10320872 intron Bruce - chr3R 10320998 intron Bruce - chr3R 10321124 intron Bruce - chr3R_5_10320001 chr3R_10320001 RAL-105 920 chr3R 10480852 10480883 chr3R 10480931 10480962 12 79 2.5 2.0 2.2 3.8 110 chr3R 10480852 intergenic not near genes chr3R 10480907 intergenic not near genes chr3R 10480962 intergenic not near genes chr3R_12_10480001 chr3R_10480001 RAL-105 921 chr3R 10530206 10530237 chr3R 10530289 10530321 14 83 3.5 2.5 3.0 3.5 115 chr3R 10530206 intron hth - chr3R 10530264 intron hth - chr3R 10530321 intron hth - chr3R_14_10530001 chr3R_10530001 RAL-105 922 chr3R 10531866 10531898 chr3R 10531947 10531979 13 81 0.5 1.5 1.0 6.5 113 chr3R 10531866 intron hth - chr3R 10531922 intron hth - chr3R 10531979 intron hth - chr3R_13_10530001 chr3R_10530001 RAL-105 923 chr3R 10535448 10535476 chr3R 10535544 10535571 4 96 2.0 0.0 1.0 2.0 123 chr3R 10535448 intron hth - chr3R 10535510 intron hth - chr3R 10535571 intron hth - chr3R_4_10535001 chr3R_10535001 RAL-105 924 chr3R 10720629 10720655 chr3R 10720713 10720739 6 83 3.0 3.5 3.2 1.4 110 chr3R 10720629 intergenic not near genes chr3R 10720684 intergenic not near genes chr3R 10720739 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-105 925 chr3R 10752629 10752650 chr3R 10752715 10752736 5 85 2.0 1.5 1.8 1.8 107 chr3R 10752629 intergenic not near genes chr3R 10752682 intergenic not near genes chr3R 10752736 intergenic not near genes chr3R_5_10750001 chr3R_10750001 RAL-105 926 chr3R 10817230 10817253 chr3R 10817309 10817336 4 78 0.0 0.5 0.2 3.3 106 chr3R 10817230 3` UTR CG4089 + chr3R 10817283 3` UTR CG4089 + chr3R 10817336 3` UTR CG4089 + chr3R_4_10815001 chr3R_10815001 RAL-105 927 chr3R 10870863 10870901 chr3R 10870944 10870982 7 81 1.0 4.0 2.5 2.0 119 chr3R 10870863 intergenic Fdh -,Tsp86D + chr3R 10870922 3` UTR Fdh - chr3R 10870982 3` UTR Fdh - chr3R_7_10870001 chr3R_10870001 RAL-105 928 chr3R 10919685 10919713 chr3R 10919762 10919791 7 78 3.5 2.0 2.8 1.8 106 chr3R 10919685 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919791 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-105 929 chr3R 10935746 10935777 chr3R 10935828 10935859 5 82 1.0 1.0 1.0 2.5 113 chr3R 10935746 intergenic not near genes chr3R 10935802 intergenic not near genes chr3R 10935859 intergenic not near genes chr3R_5_10935001 chr3R_10935001 RAL-105 930 chr3R 11102329 11102349 chr3R 11102410 11102430 6 81 4.0 7.0 5.5 0.9 101 chr3R 11102329 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102430 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-105 931 chr3R 11108288 11108306 chr3R 11112299 11112312 5 4010 4.0 3.0 3.5 1.1 4024 chr3R 11108288 intergenic not near genes chr3R 11110300 intergenic not near genes chr3R 11112312 intergenic not near genes chr3R_5_11110001 chr3R_11110001 RAL-105 932 chr3R 11142514 11142547 chr3R 11142628 11142662 7 114 1.0 0.0 0.5 4.7 148 chr3R 11142514 intergenic not near genes chr3R 11142588 intergenic not near genes chr3R 11142662 intergenic not near genes chr3R_7_11140001 chr3R_11140001 RAL-105 933 chr3R 11325342 11325364 chr3R 11325437 11325458 6 95 3.0 4.5 3.8 1.2 116 chr3R 11325342 intergenic not near genes chr3R 11325400 intergenic not near genes chr3R 11325458 intergenic not near genes chr3R_6_11325001 chr3R_11325001 RAL-105 934 chr3R 11379242 11379267 chr3R 11388393 11388422 roo 4 9154 3.0 2.5 2.8 1.1 9180 chr3R 11379242 intron pros + chr3R 11383832 intron pros + chr3R 11388422 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-105 935 chr3R 11461270 11461289 chr3R 11461349 11461369 4 80 2.5 1.5 2.0 1.3 99 chr3R 11461270 intron CG17230 + chr3R 11461320 intron CG17230 + chr3R 11461369 intron CG17230 + chr3R_4_11460001 chr3R_11460001 RAL-105 936 chr3R 11496335 11496369 chr3R 11496411 11496447 6 77 0.5 2.5 1.5 2.4 112 chr3R 11496335 intergenic not near genes chr3R 11496391 intergenic not near genes chr3R 11496447 intergenic not near genes chr3R_6_11495001 chr3R_11495001 RAL-105 937 chr3R 11583595 11583612 chr3R 11583672 11583689 5 77 0.0 5.5 2.8 1.3 94 chr3R 11583595 intron wkd + chr3R 11583642 intron wkd + chr3R 11583689 intron wkd + chr3R_5_11580001 chr3R_11580001 RAL-105 938 chr3R 11694725 11694737 chr3R 11694816 11694830 4 92 0.0 1.0 0.5 2.7 105 chr3R 11694725 intergenic Fer3 - chr3R 11694778 intergenic Fer3 - chr3R 11694830 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-105 939 chr3R 11710207 11710238 chr3R 11710285 11710315 12 78 3.0 2.0 2.5 3.4 108 chr3R 11710207 intergenic not near genes chr3R 11710261 intergenic not near genes chr3R 11710315 intergenic not near genes chr3R_12_11710001 chr3R_11710001 RAL-105 940 chr3R 11717379 11717399 chr3R 11717458 11717478 4 79 1.5 1.5 1.5 1.6 99 chr3R 11717379 intergenic not near genes chr3R 11717428 intergenic not near genes chr3R 11717478 intergenic not near genes chr3R_4_11715001 chr3R_11715001 RAL-105 941 chr3R 11841068 11841090 chr3R 11846259 11846280 BS 6 5191 2.0 3.5 2.8 1.6 5212 chr3R 11841068 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846280 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-105 942 chr3R 11914378 11914394 chr3R 11914463 11914479 5 85 1.5 2.0 1.8 1.8 101 chr3R 11914378 intron Cad87A - chr3R 11914428 intron Cad87A - chr3R 11914479 intron Cad87A - chr3R_5_11910001 chr3R_11910001 RAL-105 943 chr3R 11919303 11919336 chr3R 11919390 11919403 14 82 3.0 1.0 2.0 4.7 100 chr3R 11919303 intron Cad87A - chr3R 11919353 intron Cad87A - chr3R 11919403 intron Cad87A - chr3R_14_11915001 chr3R_11915001 RAL-105 944 chr3R 12022898 12022911 chr3R 12025074 12025088 pogo 6 2176 1.5 2.0 1.8 2.1 2190 chr3R 12022898 intergenic not near genes chr3R 12023993 intergenic not near genes chr3R 12025088 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-105 945 chr3R 12119879 12119901 chr3R 12119978 12119999 7 97 3.5 1.0 2.2 2.2 120 chr3R 12119879 intergenic not near genes chr3R 12119939 intergenic not near genes chr3R 12119999 intergenic not near genes chr3R_7_12115001 chr3R_12115001 RAL-105 946 chr3R 12137928 12137954 chr3R 12138006 12138013 6 74 3.0 0.5 1.8 2.1 85 chr3R 12137928 intergenic not near genes chr3R 12137970 intergenic not near genes chr3R 12138013 intergenic not near genes chr3R_6_12135001 chr3R_12135001 RAL-105 947 chr3R 12156237 12156264 chr3R 12156355 12156386 9 120 1.5 2.5 2.0 3.0 149 chr3R 12156237 5` UTR dpr15 - chr3R 12156312 5` UTR dpr15 - chr3R 12156386 5` UTR dpr15 - chr3R_9_12155001 chr3R_12155001 RAL-105 948 chr3R 12156775 12156797 chr3R 12156854 12156866 6 76 1.5 5.5 3.5 1.3 91 chr3R 12156775 intron dpr15 - chr3R 12156820 intron dpr15 - chr3R 12156866 intron dpr15 - chr3R_6_12155001 chr3R_12155001 RAL-105 949 chr3R 12161103 12161137 chr3R 12161266 12161300 6 162 3.5 1.5 2.5 1.7 197 chr3R 12161103 intergenic not near genes chr3R 12161202 intergenic not near genes chr3R 12161300 intergenic not near genes chr3R_6_12160001 chr3R_12160001 RAL-105 950 chr3R 12211659 12211683 chr3R 12211737 12211766 11 79 4.0 3.0 3.5 2.4 107 chr3R 12211659 intergenic not near genes chr3R 12211712 intergenic not near genes chr3R 12211766 intergenic not near genes chr3R_11_12210001 chr3R_12210001 RAL-105 951 chr3R 12214346 12214371 chr3R 12214437 12214462 9 91 5.5 3.0 4.2 1.7 116 chr3R 12214346 3` UTR CG4848 - chr3R 12214404 3` UTR CG4848 - chr3R 12214462 3` UTR CG4848 - chr3R_9_12210001 chr3R_12210001 RAL-105 952 chr3R 12398618 12398628 chr3R 12405594 12405602 4 6974 10.0 5.0 7.5 0.5 6984 chr3R 12398618 intron CG34402 + chr3R 12402110 exon CG34402 + chr3R 12405602 intron Cyp9f2 - chr3R_4_12400001 chr3R_12400001 RAL-105 953 chr3R 12439890 12439909 chr3R 12440138 12440157 7 248 0.0 0.0 0.0 7.0 267 chr3R 12439890 intron Desat1 + chr3R 12440024 intron Desat1 + chr3R 12440157 intron Desat1 + chr3R_7_12440001 chr3R_12440001 RAL-105 954 chr3R 12522366 12522374 chr3R 12522450 12522459 4 84 7.5 5.5 6.5 0.5 93 chr3R 12522366 5` UTR Octbeta3R - chr3R 12522412 5` UTR Octbeta3R - chr3R 12522459 5` UTR Octbeta3R - chr3R_4_12520001 chr3R_12520001 RAL-105 955 chr3R 12726448 12726463 chr3R 12726543 12726560 4 96 2.0 1.5 1.8 1.4 112 chr3R 12726448 intergenic not near genes chr3R 12726504 intergenic not near genes chr3R 12726560 intergenic not near genes chr3R_4_12725001 chr3R_12725001 RAL-105 956 chr3R 12748974 12748995 chr3R 12749067 12749088 5 93 0.0 0.5 0.2 4.2 114 chr3R 12748974 intron beat-Vc - chr3R 12749031 intron beat-Vc - chr3R 12749088 intron beat-Vc - chr3R_5_12745001 chr3R_12745001 RAL-105 957 chr3R 12810017 12810046 chr3R 12810094 12810123 14 75 2.0 6.0 4.0 2.8 106 chr3R 12810017 intergenic not near genes chr3R 12810070 intergenic not near genes chr3R 12810123 intergenic not near genes chr3R_14_12810001 chr3R_12810001 RAL-105 958 chr3R 12833150 12833174 chr3R 12833517 12833541 5 364 2.0 2.5 2.2 1.6 391 chr3R 12833150 intergenic not near genes chr3R 12833346 intergenic not near genes chr3R 12833541 intergenic not near genes chr3R_5_12830001 chr3R_12830001 RAL-105 959 chr3R 12920151 12920175 chr3R 12925354 12925378 copia 5 5201 4.5 3.5 4.0 1.0 5227 chr3R 12920151 intron beat-Vb + chr3R 12922764 intron beat-Vb + chr3R 12925378 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-105 960 chr3R 12931218 12931245 chr3R 12931295 12931322 12 77 1.0 1.0 1.0 6.0 104 chr3R 12931218 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931270 intron,3` UTR beat-Vb +,CR44236 - chr3R 12931322 intron,3` UTR beat-Vb +,CR44236 - chr3R_12_12930001 chr3R_12930001 RAL-105 961 chr3R 12947538 12947565 chr3R 12947616 12947642 12 77 1.5 2.0 1.8 4.3 104 chr3R 12947538 intergenic not near genes chr3R 12947590 intergenic not near genes chr3R 12947642 intergenic not near genes chr3R_12_12945001 chr3R_12945001 RAL-105 962 chr3R 12972556 12972581 chr3R 12972694 12972720 4 139 1.0 1.5 1.2 1.8 164 chr3R 12972556 intron CG7381 - chr3R 12972638 intron CG7381 - chr3R 12972720 intron CG7381 - chr3R_4_12970001 chr3R_12970001 RAL-105 963 chr3R 13013214 13013231 chr3R 13013292 13013313 9 82 2.5 1.0 1.8 3.2 99 chr3R 13013214 intron CtBP + chr3R 13013264 intron CtBP + chr3R 13013313 intron CtBP + chr3R_9_13010001 chr3R_13010001 RAL-105 964 chr3R 13015749 13015779 chr3R 13015835 13015850 14 85 1.5 4.5 3.0 3.5 101 chr3R 13015749 intron CtBP + chr3R 13015800 intron CtBP + chr3R 13015850 intron CtBP + chr3R_14_13015001 chr3R_13015001 RAL-105 965 chr3R 13042990 13043011 chr3R 13043223 13043243 5 233 4.5 4.0 4.2 1.0 253 chr3R 13042990 exon CG11670 + chr3R 13043116 intron CG11670 + chr3R 13043243 intron CG11670 + chr3R_5_13040001 chr3R_13040001 RAL-105 966 chr3R 13120772 13120799 chr3R 13120849 13120876 14 77 2.0 3.5 2.8 3.7 104 chr3R 13120772 intron timeout + chr3R 13120824 intron timeout + chr3R 13120876 intron timeout + chr3R_14_13120001 chr3R_13120001 RAL-105 967 chr3R 13135832 13135851 chr3R 13138007 13138026 pogo 4 2175 1.0 0.0 0.5 2.7 2194 chr3R 13135832 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136929 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138026 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-105 968 chr3R 13143047 13143065 chr3R 13148619 13148641 mdg3 7 5574 1.0 6.0 3.5 1.6 5594 chr3R 13143047 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145844 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-105 969 chr3R 13193554 13193578 chr3R 13193930 13193954 9 374 4.0 2.0 3.0 2.2 400 chr3R 13193554 intergenic not near genes chr3R 13193754 intergenic not near genes chr3R 13193954 intergenic not near genes chr3R_9_13190001 chr3R_13190001 RAL-105 970 chr3R 13195950 13195982 chr3R 13196045 13196075 12 94 0.5 2.0 1.2 5.5 125 chr3R 13195950 intergenic not near genes chr3R 13196012 intergenic not near genes chr3R 13196075 intergenic not near genes chr3R_12_13195001 chr3R_13195001 RAL-105 971 chr3R 13248665 13248675 chr3R 13248764 13248774 4 99 0.5 2.0 1.2 1.8 109 chr3R 13248665 intron Ace - chr3R 13248720 intron Ace - chr3R 13248774 intron Ace - chr3R_4_13245001 chr3R_13245001 RAL-105 972 chr3R 13325054 13325063 chr3R 13325201 13325211 6 147 1.5 1.0 1.2 2.7 157 chr3R 13325054 intergenic not near genes chr3R 13325132 intergenic not near genes chr3R 13325211 intergenic not near genes chr3R_6_13325001 chr3R_13325001 RAL-105 973 chr3R 13340045 13340074 chr3R 13340170 13340195 13 123 5.5 5.0 5.2 2.1 150 chr3R 13340045 5` UTR PK2-R1 + chr3R 13340120 5` UTR PK2-R1 + chr3R 13340195 exon PK2-R1 + chr3R_13_13340001 chr3R_13340001 RAL-105 974 chr3R 13439583 13439588 chr3R 13439663 13439670 4 81 3.0 1.5 2.2 1.2 87 chr3R 13439583 intergenic CR42756 - chr3R 13439626 intergenic CR42756 - chr3R 13439670 intergenic CR42756 - chr3R_4_13435001 chr3R_13435001 RAL-105 975 chr3R 13552297 13552322 chr3R 13552389 13552410 6 90 2.5 2.0 2.2 1.9 113 chr3R 13552297 intergenic not near genes chr3R 13552354 intergenic not near genes chr3R 13552410 intergenic not near genes chr3R_6_13550001 chr3R_13550001 RAL-105 976 chr3R 13693028 13693028 chr3R 21907534 21907536 17 8214507 4.5 12.0 8.2 1.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_17_17800001 chr3R_17800001 RAL-105 977 chr3R 13981238 13981259 chr3R 13981348 13981369 5 110 1.5 0.5 1.0 2.5 131 chr3R 13981238 intron rdx - chr3R 13981304 intron rdx - chr3R 13981369 intron rdx - chr3R_5_13980001 chr3R_13980001 RAL-105 978 chr3R 14062841 14062865 chr3R 14062917 14062941 7 76 0.0 0.5 0.2 5.8 100 chr3R 14062841 intron foxo + chr3R 14062891 intron foxo + chr3R 14062941 intron foxo + chr3R_7_14060001 chr3R_14060001 RAL-105 979 chr3R 14070132 14070145 chr3R 14070212 14070226 6 81 1.0 3.5 2.2 1.9 94 chr3R 14070132 intron foxo + chr3R 14070179 intron foxo + chr3R 14070226 intron foxo + chr3R_6_14070001 chr3R_14070001 RAL-105 980 chr3R 14258483 14258508 chr3R 14258566 14258594 6 85 7.5 2.0 4.8 1.0 111 chr3R 14258483 intron Aats-met - chr3R 14258538 intron Aats-met - chr3R 14258594 intron Aats-met - chr3R_6_14255001 chr3R_14255001 RAL-105 981 chr3R 14281379 14281400 chr3R 14281458 14281479 4 79 1.5 1.5 1.5 1.6 100 chr3R 14281379 intron trx - chr3R 14281429 intron trx - chr3R 14281479 intron trx - chr3R_4_14280001 chr3R_14280001 RAL-105 982 chr3R 14380545 14380575 chr3R 14380646 14380676 4 101 0.0 0.0 0.0 4.0 131 chr3R 14380545 intergenic soti - chr3R 14380610 intergenic soti - chr3R 14380676 3` UTR soti - chr3R_4_14380001 chr3R_14380001 RAL-105 983 chr3R 14401055 14401071 chr3R 14401139 14401155 5 84 0.5 1.0 0.8 2.8 100 chr3R 14401055 intron cv-c - chr3R 14401105 intron cv-c - chr3R 14401155 intron cv-c - chr3R_5_14400001 chr3R_14400001 RAL-105 984 chr3R 14448905 14448919 chr3R 14448983 14448998 4 79 2.0 4.5 3.2 1.0 93 chr3R 14448905 intron cv-c - chr3R 14448952 intron cv-c - chr3R 14448998 intron cv-c - chr3R_4_14445001 chr3R_14445001 RAL-105 985 chr3R 14534744 14534757 chr3R 14534812 14534839 7 77 1.5 3.0 2.2 2.2 95 chr3R 14534744 intron Pde6 - chr3R 14534792 intron Pde6 - chr3R 14534839 intron Pde6 - chr3R_7_14530001 chr3R_14530001 RAL-105 986 chr3R 14579191 14579225 chr3R 14579281 14579315 8 90 2.5 2.0 2.2 2.5 124 chr3R 14579191 intron stumps + chr3R 14579253 intron stumps + chr3R 14579315 intron stumps + chr3R_8_14575001 chr3R_14575001 RAL-105 987 chr3R 14617038 14617057 chr3R 14617124 14617144 4 87 1.5 0.5 1.0 2.0 106 chr3R 14617038 intron CG14853 + chr3R 14617091 intron CG14853 + chr3R 14617144 intron CG14853 + chr3R_4_14615001 chr3R_14615001 RAL-105 988 chr3R 14662318 14662338 chr3R 14662399 14662419 9 81 1.5 1.5 1.5 3.6 101 chr3R 14662318 intron Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662419 exon Rad17 - chr3R_9_14660001 chr3R_14660001 RAL-105 989 chr3R 14682063 14682077 chr3R 14682164 14682182 8 104 3.0 2.0 2.5 2.3 119 chr3R 14682063 intron Meltrin - chr3R 14682122 intron Meltrin - chr3R 14682182 intron Meltrin - chr3R_8_14680001 chr3R_14680001 RAL-105 990 chr3R 14685786 14685807 chr3R 14685867 14685885 5 80 3.5 1.0 2.2 1.6 99 chr3R 14685786 intron Meltrin - chr3R 14685836 intron Meltrin - chr3R 14685885 intron Meltrin - chr3R_5_14685001 chr3R_14685001 RAL-105 991 chr3R 14823203 14823231 chr3R 14823452 14823479 4 249 0.5 1.0 0.8 2.2 276 chr3R 14823203 intron btsz - chr3R 14823341 intron btsz - chr3R 14823479 intron btsz - chr3R_4_14820001 chr3R_14820001 RAL-105 992 chr3R 15113196 15113200 chr3R 15113283 15113287 5 87 4.0 4.0 4.0 1.0 91 chr3R 15113196 intron CG42788 - chr3R 15113242 intron CG42788 - chr3R 15113287 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-105 993 chr3R 15115321 15115342 chr3R 15115465 15115486 9 144 4.0 1.0 2.5 2.6 165 chr3R 15115321 intron CG42788 - chr3R 15115404 intron CG42788 - chr3R 15115486 intron CG42788 - chr3R_9_15115001 chr3R_15115001 RAL-105 994 chr3R 15286987 15286988 chr3R 21907535 21907536 7 6620548 13.5 12.5 13.0 0.5 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_7_18595001 chr3R_18595001 RAL-105 995 chr3R 15302504 15302534 chr3R 15302582 15302612 4 77 1.5 0.5 1.0 2.0 108 chr3R 15302504 intron Tm1 + chr3R 15302558 intron Tm1 + chr3R 15302612 intron Tm1 + chr3R_4_15300001 chr3R_15300001 RAL-105 996 chr3R 15470477 15470498 chr3R 15470622 15470640 9 145 2.5 3.0 2.8 2.4 163 chr3R 15470477 intron AdamTS-A - chr3R 15470558 intron AdamTS-A - chr3R 15470640 intron AdamTS-A - chr3R_9_15470001 chr3R_15470001 RAL-105 997 chr3R 15601167 15601193 chr3R 15608689 15608715 412 11 7522 5.0 2.5 3.8 2.3 7548 chr3R 15601167 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-105 998 chr3R 15715816 15715832 chr3R 15715900 15715916 8 85 1.0 3.5 2.2 2.5 100 chr3R 15715816 exon CG31294 - chr3R 15715866 intron CG31294 - chr3R 15715916 intron CG31294 - chr3R_8_15715001 chr3R_15715001 RAL-105 999 chr3R 15991936 15991961 chr3R 15992014 15992038 7 77 3.5 4.5 4.0 1.4 102 chr3R 15991936 intron,intron srp +,CR44133 + chr3R 15991987 intron,intron srp +,CR44133 + chr3R 15992038 intron,intron srp +,CR44133 + chr3R_7_15990001 chr3R_15990001 RAL-105 1000 chr3R 16031958 16031988 chr3R 16032044 16032072 6 84 1.0 1.0 1.0 3.0 114 chr3R 16031958 intron pnr + chr3R 16032015 intron pnr + chr3R 16032072 intron pnr + chr3R_6_16030001 chr3R_16030001 RAL-105 1001 chr3R 16472583 16472594 chr3R 16472659 16472668 5 75 6.0 4.0 5.0 0.8 85 chr3R 16472583 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472668 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-105 1002 chr3R 16472595 16472605 chr3R 16472651 16472658 4 63 5.0 5.5 5.2 0.6 63 chr3R 16472595 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472658 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-105 1003 chr3R 16756321 16756344 chr3R 16762511 16762535 diver 4 6191 1.5 1.0 1.2 1.8 6214 chr3R 16756321 intron bxd - chr3R 16759428 intron bxd - chr3R 16762535 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-105 1004 chr3R 16774198 16774231 chr3R 16774304 16774337 4 105 1.0 2.0 1.5 1.6 139 chr3R 16774198 intergenic not near genes chr3R 16774268 intergenic not near genes chr3R 16774337 intergenic not near genes chr3R_4_16770001 chr3R_16770001 RAL-105 1005 chr3R 16996308 16996331 chr3R 16996384 16996407 5 76 2.5 1.5 2.0 1.7 99 chr3R 16996308 intergenic CG3534 +,CG17556 - chr3R 16996358 intergenic CG3534 +,CG17556 - chr3R 16996407 intergenic CG3534 +,CG17556 - chr3R_5_16995001 chr3R_16995001 RAL-105 1006 chr3R 17120503 17120525 chr3R 17120727 17120750 4 225 2.0 1.0 1.5 1.6 247 chr3R 17120503 intron,exon cher -,CG34278 + chr3R 17120626 intron,exon cher -,CG34278 + chr3R 17120750 intron,exon cher -,CG34278 + chr3R_4_17120001 chr3R_17120001 RAL-105 1007 chr3R 17497080 17497109 chr3R 17497157 17497186 6 76 0.0 1.5 0.8 3.3 106 chr3R 17497080 intron Dscam3 - chr3R 17497133 intron Dscam3 - chr3R 17497186 intron Dscam3 - chr3R_6_17495001 chr3R_17495001 RAL-105 1008 chr3R 17498853 17498876 chr3R 17498995 17499018 5 142 0.0 1.5 0.8 2.8 165 chr3R 17498853 intron Dscam3 - chr3R 17498936 intron Dscam3 - chr3R 17499018 intron Dscam3 - chr3R_5_17495001 chr3R_17495001 RAL-105 1009 chr3R 17521581 17521588 chr3R 17521717 17521747 5 155 0.0 4.5 2.2 1.6 166 chr3R 17521581 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521747 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-105 1010 chr3R 17563923 17563949 chr3R 17564025 17564051 5 102 1.5 2.0 1.8 1.8 128 chr3R 17563923 intron Hmx + chr3R 17563987 intron Hmx + chr3R 17564051 intron Hmx + chr3R_5_17560001 chr3R_17560001 RAL-105 1011 chr3R 17591289 17591322 chr3R 17591723 17591738 F-element 5 430 0.5 3.0 1.8 1.8 449 chr3R 17591289 intergenic not near genes chr3R 17591514 intergenic not near genes chr3R 17591738 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-105 1012 chr3R 17925851 17925884 chr3R 17927318 17927351 hobo 14 1465 2.5 5.0 3.8 2.9 1500 chr3R 17925851 intron cpo + chr3R 17926601 intron cpo + chr3R 17927351 intron cpo + chr3R_14_17925001 chr3R_17925001 RAL-105 1013 chr3R 18043797 18043822 chr3R 18043875 18043900 8 77 1.0 3.0 2.0 2.7 103 chr3R 18043797 intergenic not near genes chr3R 18043848 intergenic not near genes chr3R 18043900 intergenic not near genes chr3R_8_18040001 chr3R_18040001 RAL-105 1014 chr3R 18089074 18089104 chr3R 18089159 18089189 7 85 2.5 4.5 3.5 1.6 115 chr3R 18089074 intergenic not near genes chr3R 18089132 intergenic not near genes chr3R 18089189 intergenic not near genes chr3R_7_18085001 chr3R_18085001 RAL-105 1015 chr3R 18235215 18235230 chr3R 18235391 18235397 5 174 6.0 1.5 3.8 1.0 182 chr3R 18235215 intergenic not near genes chr3R 18235306 intergenic not near genes chr3R 18235397 intergenic not near genes chr3R_5_18235001 chr3R_18235001 RAL-105 1016 chr3R 18299264 18299292 chr3R 18302632 18302660 5 3370 16.0 23.0 19.5 0.2 3396 chr3R 18299264 5` UTR Dlc90F + chr3R 18300962 exon CG18600 - chr3R 18302660 exon CG7126 - chr3R_5_18300001 chr3R_18300001 RAL-105 1017 chr3R 18342012 18342036 chr3R 18342090 18342105 6 73 3.0 2.0 2.5 1.7 93 chr3R 18342012 intron CG15803 - chr3R 18342058 intron CG15803 - chr3R 18342105 intron CG15803 - chr3R_6_18340001 chr3R_18340001 RAL-105 1018 chr3R 18352587 18352607 chr3R 18352680 18352700 6 93 1.0 3.0 2.0 2.0 113 chr3R 18352587 intron CG15803 - chr3R 18352644 intron CG15803 - chr3R 18352700 intron CG15803 - chr3R_6_18350001 chr3R_18350001 RAL-105 1019 chr3R 18473236 18473251 chr3R 18473323 18473338 4 87 0.0 0.0 0.0 4.0 102 chr3R 18473236 intron fru - chr3R 18473287 intron fru - chr3R 18473338 intron fru - chr3R_4_18470001 chr3R_18470001 RAL-105 1020 chr3R 18766780 18766807 chr3R 18766857 18766885 4 78 1.5 2.0 1.8 1.4 105 chr3R 18766780 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766885 intron CG7720 - chr3R_4_18765001 chr3R_18765001 RAL-105 1021 chr3R 18781697 18781726 chr3R 18781773 18781802 5 76 1.0 3.5 2.2 1.6 105 chr3R 18781697 intron CG7720 - chr3R 18781750 intron CG7720 - chr3R 18781802 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-105 1022 chr3R 18791500 18791524 chr3R 18791576 18791584 8 73 3.5 1.5 2.5 2.3 84 chr3R 18791500 intron CG7720 - chr3R 18791542 intron CG7720 - chr3R 18791584 intron CG7720 - chr3R_8_18790001 chr3R_18790001 RAL-105 1023 chr3R 18808500 18808508 chr3R 18808564 18808585 4 74 1.0 4.0 2.5 1.1 85 chr3R 18808500 intron CG18208 - chr3R 18808542 intron CG18208 - chr3R 18808585 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-105 1024 chr3R 18817517 18817534 chr3R 18817615 18817632 4 98 1.0 0.0 0.5 2.7 115 chr3R 18817517 intron CG18208 - chr3R 18817574 intron CG18208 - chr3R 18817632 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-105 1025 chr3R 18856493 18856524 chr3R 18856661 18856693 12 168 2.5 2.0 2.2 3.8 200 chr3R 18856493 intergenic not near genes chr3R 18856593 intergenic not near genes chr3R 18856693 intergenic not near genes chr3R_12_18855001 chr3R_18855001 RAL-105 1026 chr3R 18942595 18942626 chr3R 18942679 18942710 16 78 4.0 1.0 2.5 4.6 115 chr3R 18942595 intron CG42613 + chr3R 18942652 intron CG42613 + chr3R 18942710 intron CG42613 + chr3R_16_18940001 chr3R_18940001 RAL-105 1027 chr3R 19140265 19140298 chr3R 19140712 19140746 10 448 5.0 5.0 5.0 1.7 481 chr3R 19140265 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140746 3` UTR Ppcs - chr3R_10_19140001 chr3R_19140001 RAL-105 1028 chr3R 19278758 19278786 chr3R 19278834 19278862 7 76 0.5 0.5 0.5 4.7 104 chr3R 19278758 intergenic CR44173 - chr3R 19278810 3` UTR CR44173 - chr3R 19278862 3` UTR CR44173 - chr3R_7_19275001 chr3R_19275001 RAL-105 1029 chr3R 19542881 19542901 chr3R 19543009 19543010 9 125 2.0 3.5 2.8 2.4 129 chr3R 19542881 intron Dys + chr3R 19542946 intron Dys + chr3R 19543010 intron Dys + chr3R_9_19540001 chr3R_19540001 RAL-105 1030 chr3R 19717688 19717722 chr3R 19717770 19717804 5 81 4.0 1.0 2.5 1.4 116 chr3R 19717688 intergenic not near genes chr3R 19717746 intergenic not near genes chr3R 19717804 intergenic not near genes chr3R_5_19715001 chr3R_19715001 RAL-105 1031 chr3R 19735712 19735735 chr3R 19735817 19735841 6 106 1.0 1.0 1.0 3.0 129 chr3R 19735712 intron GluClalpha + chr3R 19735776 intron GluClalpha + chr3R 19735841 intron GluClalpha + chr3R_6_19735001 chr3R_19735001 RAL-105 1032 chr3R 19793894 19793927 chr3R 19793986 19794019 9 92 2.0 1.5 1.8 3.2 125 chr3R 19793894 intergenic bnl - chr3R 19793956 intergenic bnl - chr3R 19794019 intergenic bnl - chr3R_9_19790001 chr3R_19790001 RAL-105 1033 chr3R 19948404 19948417 chr3R 19948481 19948494 4 75 3.0 2.5 2.8 1.1 90 chr3R 19948404 intron Hs6st - chr3R 19948449 intron,5` UTR Hs6st -,CG4783 + chr3R 19948494 intron,exon Hs6st -,CG4783 + chr3R_4_19945001 chr3R_19945001 RAL-105 1034 chr3R 19953952 19953983 chr3R 19954029 19954060 15 75 3.0 4.5 3.8 3.1 108 chr3R 19953952 intron Hs6st - chr3R 19954006 intron Hs6st - chr3R 19954060 intron Hs6st - chr3R_15_19950001 chr3R_19950001 RAL-105 1035 chr3R 20060641 20060655 chr3R 20060724 20060737 4 83 1.0 2.5 1.8 1.4 96 chr3R 20060641 intergenic not near genes chr3R 20060689 intergenic not near genes chr3R 20060737 intergenic not near genes chr3R_4_20060001 chr3R_20060001 RAL-105 1036 chr3R 20109542 20109561 chr3R 20114748 20114767 copia 4 5206 2.0 2.0 2.0 1.3 5225 chr3R 20109542 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114767 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-105 1037 chr3R 20156708 20156713 chr3R 20165862 20165868 roo 5 9164 3.0 0.0 1.5 2.0 9160 chr3R 20156708 intergenic not near genes chr3R 20161288 intergenic not near genes chr3R 20165868 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-105 1038 chr3R 20197791 20197808 chr3R 20197860 20197887 8 74 5.0 2.5 3.8 1.7 96 chr3R 20197791 intergenic not near genes chr3R 20197839 intergenic not near genes chr3R 20197887 intergenic not near genes chr3R_8_20195001 chr3R_20195001 RAL-105 1039 chr3R 20469288 20469312 chr3R 20469383 20469407 4 97 0.0 0.0 0.0 4.0 119 chr3R 20469288 intron Gfrl - chr3R 20469348 intron Gfrl - chr3R 20469407 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-105 1040 chr3R 20634295 20634327 chr3R 20634370 20634403 15 74 1.5 2.0 1.8 5.4 108 chr3R 20634295 5` UTR Pi3K92E - chr3R 20634349 5` UTR Pi3K92E - chr3R 20634403 5` UTR Pi3K92E - chr3R_15_20630001 chr3R_20630001 RAL-105 1041 chr3R 20771708 20771727 chr3R 20771789 20771800 4 76 0.0 4.0 2.0 1.3 92 chr3R 20771708 intron,intron Syp +,Takl1 - chr3R 20771754 intron,intron Syp +,Takl1 - chr3R 20771800 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-105 1042 chr3R 20806975 20806981 chr3R 20807095 20807101 4 120 0.5 2.0 1.2 1.8 126 chr3R 20806975 3` UTR Syp + chr3R 20807038 3` UTR Syp + chr3R 20807101 3` UTR Syp + chr3R_4_20805001 chr3R_20805001 RAL-105 1043 chr3R 21128196 21128223 chr3R 21128823 21128850 5 627 1.0 3.0 2.0 1.7 654 chr3R 21128196 exon CG5793 + chr3R 21128523 intron CG5793 + chr3R 21128850 exon CG5793 + chr3R_5_21125001 chr3R_21125001 RAL-105 1044 chr3R 21141673 21141705 chr3R 21150154 21150172 Tirant 12 8478 4.5 4.0 4.2 2.3 8499 chr3R 21141673 intron SNF4Agamma + chr3R 21145922 intron SNF4Agamma + chr3R 21150172 intron SNF4Agamma + chr3R_12_21145001 chr3R_21145001 RAL-105 1045 chr3R 21240449 21240473 chr3R 21240541 21240565 5 92 1.5 0.5 1.0 2.5 116 chr3R 21240449 intergenic not near genes chr3R 21240507 intergenic not near genes chr3R 21240565 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-105 1046 chr3R 21321498 21321520 chr3R 21321594 21321616 4 96 0.5 0.5 0.5 2.7 118 chr3R 21321498 intron CG16791 - chr3R 21321557 intron CG16791 - chr3R 21321616 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-105 1047 chr3R 21330871 21330898 chr3R 21330962 21330985 4 90 4.5 1.0 2.8 1.1 114 chr3R 21330871 intron CG16791 - chr3R 21330928 intron CG16791 - chr3R 21330985 intron CG16791 - chr3R_4_21330001 chr3R_21330001 RAL-105 1048 chr3R 21408584 21408614 chr3R 21408692 21408721 9 108 4.0 5.0 4.5 1.6 137 chr3R 21408584 intergenic CheB93a + chr3R 21408652 intergenic CheB93a +,CheB93b + chr3R 21408721 intergenic CheB93a +,CheB93b + chr3R_9_21405001 chr3R_21405001 RAL-105 1049 chr3R 21520002 21520015 chr3R 21520103 21520116 4 101 0.5 0.5 0.5 2.7 114 chr3R 21520002 intergenic not near genes chr3R 21520059 intergenic not near genes chr3R 21520116 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-105 1050 chr3R 21761120 21761152 chr3R 21768512 21768544 mdg1 8 7388 5.0 3.0 4.0 1.6 7424 chr3R 21761120 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768544 exon CG42335 + chr3R_8_21760001 chr3R_21760001 RAL-105 1051 chr3R 21800490 21800520 chr3R 21800575 21800605 10 85 0.5 2.0 1.2 4.5 115 chr3R 21800490 intron CASK - chr3R 21800548 intron CASK - chr3R 21800605 intron CASK - chr3R_10_21800001 chr3R_21800001 RAL-105 1052 chr3R 21824964 21824990 chr3R 21825047 21825052 6 83 3.5 3.5 3.5 1.3 88 chr3R 21824964 intergenic not near genes chr3R 21825008 intergenic not near genes chr3R 21825052 intergenic not near genes chr3R_6_21825001 chr3R_21825001 RAL-105 1053 chr3R 8339246 8339246 chr3R 21907534 21907534 6 13568288 14.0 12.0 13.0 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-105 1054 chr3R 21907534 21907534 chr3R 28831801 28831802 21 6924268 14.0 11.0 12.5 1.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 RAL-105 1055 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 14.0 12.5 13.2 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-105 1056 chr3R 9620954 9620956 chr3R 21907535 21907535 5 12286579 15.0 12.5 13.8 0.3 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-105 1057 chr3R 21907535 21907535 chr3R 28831801 28831802 19 6924266 14.0 11.0 12.5 1.4 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-105 1058 chr3R 8339246 8339247 chr3R 21907536 21907536 7 13568289 14.0 12.5 13.2 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-105 1059 chr3R 21907536 21907536 chr3R 28831801 28831804 32 6924266 13.5 11.0 12.2 2.4 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_32_25365001 chr3R_25365001 RAL-105 1060 chr3R 21983143 21983161 chr3R 21983224 21983242 7 80 1.0 3.5 2.2 2.2 99 chr3R 21983143 intron Eip93F + chr3R 21983192 intron Eip93F + chr3R 21983242 intron Eip93F + chr3R_7_21980001 chr3R_21980001 RAL-105 1061 chr3R 22239489 22239497 chr3R 22248549 22248553 roo 5 9059 5.0 0.0 2.5 1.4 9064 chr3R 22239489 intron SKIP + chr3R 22244021 intron SKIP + chr3R 22248553 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-105 1062 chr3R 22450545 22450577 chr3R 22453184 22453217 NOF 8 2638 2.0 5.5 3.8 1.7 2672 chr3R 22450545 intron CG34376 + chr3R 22451881 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-105 1063 chr3R 22597378 22597396 chr3R 22597454 22597473 4 77 5.5 5.5 5.5 0.6 95 chr3R 22597378 intron Efa6 + chr3R 22597426 intron Efa6 + chr3R 22597473 intron Efa6 + chr3R_4_22595001 chr3R_22595001 RAL-105 1064 chr3R 22797764 22797938 chr3R 22797849 22798034 15 90 0.0 0.0 0.0 15.0 270 chr3R 22797764 intergenic not near genes chr3R 22797899 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_15_22795001 chr3R_22795001 RAL-105 1065 chr3R 22846790 22846824 chr3R 22847011 22847033 9 219 0.5 3.0 1.8 3.2 243 chr3R 22846790 intergenic CG4704 - chr3R 22846912 intergenic not near genes chr3R 22847033 intergenic not near genes chr3R_9_22845001 chr3R_22845001 RAL-105 1066 chr3R 22880938 22880955 chr3R 22881076 22881093 4 138 2.5 1.0 1.8 1.4 155 chr3R 22880938 intergenic not near genes chr3R 22881016 intergenic not near genes chr3R 22881093 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-105 1067 chr3R 22889013 22889044 chr3R 22889090 22889121 11 77 3.0 0.5 1.8 3.9 108 chr3R 22889013 intergenic not near genes chr3R 22889067 intergenic not near genes chr3R 22889121 intergenic not near genes chr3R_11_22885001 chr3R_22885001 RAL-105 1068 chr3R 22946072 22946101 chr3R 22946879 22946908 10 807 0.0 3.5 1.8 3.6 836 chr3R 22946072 intron klg + chr3R 22946490 intron klg + chr3R 22946908 intron klg + chr3R_10_22945001 chr3R_22945001 RAL-105 1069 chr3R 22968663 22968695 chr3R 22968766 22968798 6 102 2.5 5.0 3.8 1.2 135 chr3R 22968663 intergenic not near genes chr3R 22968730 intergenic not near genes chr3R 22968798 intergenic not near genes chr3R_6_22965001 chr3R_22965001 RAL-105 1070 chr3R 22993511 22993538 chr3R 22993645 22993673 6 134 2.0 4.0 3.0 1.5 162 chr3R 22993511 intron Nha2 - chr3R 22993592 intron Nha2 - chr3R 22993673 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-105 1071 chr3R 23073653 23073689 chr3R 23073741 23073778 5 89 1.5 1.5 1.5 2.0 125 chr3R 23073653 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-105 1072 chr3R 23101383 23101408 chr3R 23101472 23101475 12 88 2.5 1.0 1.8 4.3 92 chr3R 23101383 intron CG13830 - chr3R 23101429 intron CG13830 - chr3R 23101475 intron CG13830 - chr3R_12_23100001 chr3R_23100001 RAL-105 1073 chr3R 23145163 23145192 chr3R 23145240 23145263 7 75 2.5 4.5 3.5 1.6 100 chr3R 23145163 intergenic not near genes chr3R 23145213 intergenic not near genes chr3R 23145263 intergenic not near genes chr3R_7_23145001 chr3R_23145001 RAL-105 1074 chr3R 23197962 23197979 chr3R 23198041 23198058 4 79 1.5 0.0 0.8 2.2 96 chr3R 23197962 exon cnc - chr3R 23198010 intron cnc - chr3R 23198058 intron cnc - chr3R_4_23195001 chr3R_23195001 RAL-105 1075 chr3R 23210637 23210672 chr3R 23210722 23210757 5 85 1.0 2.5 1.8 1.8 120 chr3R 23210637 intron cnc - chr3R 23210697 intron cnc - chr3R 23210757 intron cnc - chr3R_5_23210001 chr3R_23210001 RAL-105 1076 chr3R 23305243 23305271 chr3R 23305591 23305619 5 343 2.5 1.0 1.8 1.8 376 chr3R 23305243 intron pnt - chr3R 23305431 intron pnt - chr3R 23305619 intron pnt - chr3R_5_23305001 chr3R_23305001 RAL-105 1077 chr3R 23338173 23338191 chr3R 23338299 23338317 5 126 0.0 3.5 1.8 1.8 144 chr3R 23338173 intron pnt - chr3R 23338245 intron pnt - chr3R 23338317 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-105 1078 chr3R 23360199 23360211 chr3R 23360275 23360287 4 76 0.0 3.5 1.8 1.4 88 chr3R 23360199 3` UTR RpS3 + chr3R 23360243 intergenic RpS3 + chr3R 23360287 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-105 1079 chr3R 23421332 23421361 chr3R 23421414 23421425 7 78 2.5 1.5 2.0 2.3 93 chr3R 23421332 intron CG4374 - chr3R 23421378 intron CG4374 - chr3R 23421425 intron CG4374 - chr3R_7_23420001 chr3R_23420001 RAL-105 1080 chr3R 23556307 23556342 chr3R 23556409 23556445 8 102 2.0 3.0 2.5 2.3 138 chr3R 23556307 5` UTR CG10164 - chr3R 23556376 5` UTR CG10164 - chr3R 23556445 5` UTR CG10164 - chr3R_8_23555001 chr3R_23555001 RAL-105 1081 chr3R 23558414 23558428 chr3R 23560195 23560209 Bari1 4 1781 1.0 2.0 1.5 1.6 1795 chr3R 23558414 intron beat-IV + chr3R 23559312 intron beat-IV + chr3R 23560209 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-105 1082 chr3R 23684694 23684730 chr3R 23685180 23685194 roo 10 471 2.5 6.5 4.5 1.8 500 chr3R 23684694 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685194 exon CG18754 + chr3R_10_23680001 chr3R_23680001 RAL-105 1083 chr3R 23884294 23884324 chr3R 23884378 23884408 9 84 4.5 2.5 3.5 2.0 114 chr3R 23884294 intron Pli - chr3R 23884351 intron Pli - chr3R 23884408 intron Pli - chr3R_9_23880001 chr3R_23880001 RAL-105 1084 chr3R 23944918 23944935 chr3R 23945003 23945020 9 85 1.0 4.0 2.5 2.6 102 chr3R 23944918 intron CG12268 - chr3R 23944969 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_9_23940001 chr3R_23940001 RAL-105 1085 chr3R 24042001 24042030 chr3R 24042113 24042143 6 113 0.0 0.0 0.0 6.0 142 chr3R 24042001 3` UTR spas + chr3R 24042072 3` UTR spas + chr3R 24042143 3` UTR spas + chr3R_6_24040001 chr3R_24040001 RAL-105 1086 chr3R 24072083 24072100 chr3R 24072521 24072538 jockey 8 437 9.0 0.0 4.5 1.5 455 chr3R 24072083 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072538 intron 4EHP - chr3R_8_24070001 chr3R_24070001 RAL-105 1087 chr3R 24076915 24076948 chr3R 24078382 24078415 hobo 8 1462 1.5 3.5 2.5 2.3 1500 chr3R 24076915 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-105 1088 chr3R 24207216 24207233 chr3R 24212290 24212306 flea 5 5074 4.0 1.5 2.8 1.3 5090 chr3R 24207216 intron twin - chr3R 24209761 intron twin - chr3R 24212306 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-105 1089 chr3R 24261188 24261212 chr3R 24261266 24261290 7 78 2.5 4.5 3.5 1.6 102 chr3R 24261188 intron jar - chr3R 24261239 intron jar - chr3R 24261290 intron jar - chr3R_7_24260001 chr3R_24260001 RAL-105 1090 chr3R 24566857 24566875 chr3R 24567194 24567212 8 337 3.0 2.5 2.8 2.1 355 chr3R 24566857 intron CG13624 - chr3R 24567034 intron CG13624 - chr3R 24567212 intron CG13624 - chr3R_8_24565001 chr3R_24565001 RAL-105 1091 chr3R 24624374 24624390 chr3R 24624463 24624479 7 89 1.5 2.5 2.0 2.3 105 chr3R 24624374 intron Syx18 - chr3R 24624426 intron Syx18 - chr3R 24624479 exon Syx18 - chr3R_7_24620001 chr3R_24620001 RAL-105 1092 chr3R 24730104 24730116 chr3R 24732472 24732494 Doc 5 2376 3.5 1.0 2.2 1.6 2390 chr3R 24730104 intron tok + chr3R 24731299 intron tok + chr3R 24732494 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-105 1093 chr3R 24741082 24741119 chr3R 24741179 24741216 8 95 1.0 1.5 1.2 3.6 134 chr3R 24741082 intron tok + chr3R 24741149 intron tok + chr3R 24741216 intron tok + chr3R_8_24740001 chr3R_24740001 RAL-105 1094 chr3R 24952771 24952810 chr3R 24952860 24952876 7 83 0.0 3.0 1.5 2.8 105 chr3R 24952771 intergenic not near genes chr3R 24952824 intergenic not near genes chr3R 24952876 intergenic not near genes chr3R_7_24950001 chr3R_24950001 RAL-105 1095 chr3R 24967114 24967148 chr3R 24967193 24967227 8 75 5.0 3.5 4.2 1.5 113 chr3R 24967114 intergenic not near genes chr3R 24967170 intergenic not near genes chr3R 24967227 intergenic not near genes chr3R_8_24965001 chr3R_24965001 RAL-105 1096 chr3R 25004903 25004914 chr3R 25004986 25004996 6 83 0.0 2.5 1.2 2.7 93 chr3R 25004903 intron tnc + chr3R 25004950 intron tnc + chr3R 25004996 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-105 1097 chr3R 25101090 25101115 chr3R 25101310 25101335 6 220 1.0 4.5 2.8 1.6 245 chr3R 25101090 exon,3` UTR CG33095 +,CG33096 + chr3R 25101212 exon,3` UTR CG33095 +,CG33096 + chr3R 25101335 exon,3` UTR CG33095 +,CG33096 + chr3R_6_25100001 chr3R_25100001 RAL-105 1098 chr3R 25315036 25315069 chr3R 25315129 25315161 10 93 4.5 1.5 3.0 2.5 125 chr3R 25315036 exon CG10559 - chr3R 25315098 exon CG10559 - chr3R 25315161 exon CG10559 - chr3R_10_25315001 chr3R_25315001 RAL-105 1099 chr3R 25334435 25334449 chr3R 25334560 25334571 5 124 7.0 5.5 6.2 0.7 136 chr3R 25334435 intron CG10669 - chr3R 25334503 exon CG10669 - chr3R 25334571 exon CG10669 - chr3R_5_25330001 chr3R_25330001 RAL-105 1100 chr3R 25334450 25334459 chr3R 25334555 25334560 7 110 5.5 3.5 4.5 1.3 110 chr3R 25334450 exon CG10669 - chr3R 25334505 exon CG10669 - chr3R 25334560 exon CG10669 - chr3R_7_25330001 chr3R_25330001 RAL-105 1101 chr3R 25374837 25374867 chr3R 25374915 25374945 5 77 1.0 0.5 0.8 2.8 108 chr3R 25374837 intron Fur1 - chr3R 25374891 intron Fur1 - chr3R 25374945 intron Fur1 - chr3R_5_25370001 chr3R_25370001 RAL-105 1102 chr3R 25379823 25379844 chr3R 25380013 25380034 9 190 0.0 1.5 0.8 5.0 211 chr3R 25379823 intron Fur1 - chr3R 25379928 intron Fur1 - chr3R 25380034 intron Fur1 - chr3R_9_25375001 chr3R_25375001 RAL-105 1103 chr3R 25440785 25440804 chr3R 25440873 25440892 4 88 2.5 0.0 1.2 1.8 107 chr3R 25440785 intron Fur1 - chr3R 25440838 intron Fur1 - chr3R 25440892 intron Fur1 - chr3R_4_25440001 chr3R_25440001 RAL-105 1104 chr3R 25651034 25651069 chr3R 25651113 25651145 12 78 3.5 1.5 2.5 3.4 111 chr3R 25651034 intergenic mir-92b + chr3R 25651090 intergenic mir-92b + chr3R 25651145 intergenic mir-92b + chr3R_12_25650001 chr3R_25650001 RAL-105 1105 chr3R 25658761 25658793 chr3R 25658840 25658872 4 79 1.5 1.5 1.5 1.6 111 chr3R 25658761 intron Tnks - chr3R 25658816 intron Tnks - chr3R 25658872 intron Tnks - chr3R_4_25655001 chr3R_25655001 RAL-105 1106 chr3R 25709934 25709964 chr3R 25710016 25710045 19 81 5.0 7.0 6.0 2.7 111 chr3R 25709934 intron LpR2 - chr3R 25709990 intron LpR2 - chr3R 25710045 exon LpR2 - chr3R_19_25705001 chr3R_25705001 RAL-105 1107 chr3R 25709785 25709808 chr3R 25715774 25715797 4 5989 23.5 24.0 23.8 0.2 6012 chr3R 25709785 intron LpR2 - chr3R 25712791 intron LpR2 - chr3R 25715797 intron LpR2 - chr3R_4_25710001 chr3R_25710001 RAL-105 1108 chr3R 25813921 25813943 chr3R 25813997 25814014 4 74 1.5 3.5 2.5 1.1 93 chr3R 25813921 intergenic not near genes chr3R 25813968 intergenic not near genes chr3R 25814014 intergenic not near genes chr3R_4_25810001 chr3R_25810001 RAL-105 1109 chr3R 25832692 25832721 chr3R 25841874 25841903 roo 8 9182 4.0 5.0 4.5 1.5 9211 chr3R 25832692 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841903 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-105 1110 chr3R 25956468 25956489 chr3R 25956553 25956575 7 86 2.5 0.5 1.5 2.8 107 chr3R 25956468 intergenic CCAP-R - chr3R 25956522 intergenic CCAP-R - chr3R 25956575 intergenic CCAP-R - chr3R_7_25955001 chr3R_25955001 RAL-105 1111 chr3R 25983697 25983720 chr3R 25983794 25983818 6 98 9.0 1.5 5.2 1.0 121 chr3R 25983697 exon Nf1 + chr3R 25983758 intron Nf1 + chr3R 25983818 intron Nf1 + chr3R_6_25980001 chr3R_25980001 RAL-105 1112 chr3R 26033235 26033249 chr3R 26033342 26033361 6 111 4.0 3.0 3.5 1.3 126 chr3R 26033235 3` UTR E(spl)m6-BFM + chr3R 26033298 3` UTR E(spl)m6-BFM + chr3R 26033361 3` UTR E(spl)m6-BFM + chr3R_6_26030001 chr3R_26030001 RAL-105 1113 chr3R 26093844 26093864 chr3R 26093922 26093924 7 73 3.5 5.0 4.2 1.3 80 chr3R 26093844 intron dys - chr3R 26093884 intron dys - chr3R 26093924 intron dys - chr3R_7_26090001 chr3R_26090001 RAL-105 1114 chr3R 26126467 26126482 chr3R 26126621 26126636 5 154 2.5 0.5 1.5 2.0 169 chr3R 26126467 intron CG31324 + chr3R 26126552 intron CG31324 + chr3R 26126636 intron CG31324 + chr3R_5_26125001 chr3R_26125001 RAL-105 1115 chr3R 26226987 26227009 chr3R 26227094 26227116 7 106 1.5 3.0 2.2 2.2 129 chr3R 26226987 intergenic not near genes chr3R 26227052 intergenic not near genes chr3R 26227116 intergenic not near genes chr3R_7_26225001 chr3R_26225001 RAL-105 1116 chr3R 26263716 26263742 chr3R 26264099 26264125 8 383 1.0 1.5 1.2 3.6 409 chr3R 26263716 intron CG6154 + chr3R 26263920 intron CG6154 + chr3R 26264125 intron CG6154 + chr3R_8_26260001 chr3R_26260001 RAL-105 1117 chr3R 26339230 26339262 chr3R 26339324 26339356 8 95 2.0 3.0 2.5 2.3 126 chr3R 26339230 intron CG33970 + chr3R 26339293 intron CG33970 + chr3R 26339356 intron CG33970 + chr3R_8_26335001 chr3R_26335001 RAL-105 1118 chr3R 26376322 26376350 chr3R 26385482 26385510 roo 4 9160 2.5 0.5 1.5 1.6 9188 chr3R 26376322 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-105 1119 chr3R 26453251 26453271 chr3R 26453331 26453354 6 82 2.0 2.0 2.0 2.0 103 chr3R 26453251 intron CG5447 + chr3R 26453302 intron CG5447 + chr3R 26453354 intron CG5447 + chr3R_6_26450001 chr3R_26450001 RAL-105 1120 chr3R 26508151 26508183 chr3R 26508276 26508302 6 121 1.5 5.5 3.5 1.3 151 chr3R 26508151 intron plum - chr3R 26508226 intron plum - chr3R 26508302 intron plum - chr3R_6_26505001 chr3R_26505001 RAL-105 1121 chr3R 26510521 26510535 chr3R 26519576 26519590 roo 5 9055 0.5 1.0 0.8 2.8 9069 chr3R 26510521 intron plum - chr3R 26515056 intron plum - chr3R 26519590 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-105 1122 chr3R 26529351 26529363 chr3R 26529434 26529445 5 83 3.5 0.5 2.0 1.7 94 chr3R 26529351 intron plum - chr3R 26529398 intron plum - chr3R 26529445 intron plum - chr3R_5_26525001 chr3R_26525001 RAL-105 1123 chr3R 26558342 26558355 chr3R 26565654 26565665 Stalker4 6 7311 4.0 4.0 4.0 1.2 7323 chr3R 26558342 intron scrib + chr3R 26562004 intron scrib + chr3R 26565665 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-105 1124 chr3R 26611358 26611376 chr3R 26611417 26611452 5 72 2.5 2.0 2.2 1.6 94 chr3R 26611358 intergenic not near genes chr3R 26611405 intergenic not near genes chr3R 26611452 intergenic not near genes chr3R_5_26610001 chr3R_26610001 RAL-105 1125 chr3R 26642730 26642759 chr3R 26643123 26643152 jockey 5 392 2.0 1.0 1.5 2.0 422 chr3R 26642730 intergenic not near genes chr3R 26642941 intergenic not near genes chr3R 26643152 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-105 1126 chr3R 26656630 26656726 chr3R 26656727 26656809 8 94 0.0 0.0 0.0 8.0 179 chr3R 26656630 intron,exon beat-VII -,Tb + chr3R 26656720 intron,exon beat-VII -,Tb + chr3R 26656809 intron,exon beat-VII -,Tb + chr3R_8_26655001 chr3R_26655001 RAL-105 1127 chr3R 26661321 26661348 chr3R 26661411 26661438 8 87 3.0 3.0 3.0 2.0 117 chr3R 26661321 intron beat-VII - chr3R 26661380 intron beat-VII - chr3R 26661438 intron beat-VII - chr3R_8_26660001 chr3R_26660001 RAL-105 1128 chr3R 26704779 26704809 chr3R 26704876 26704906 6 91 2.0 4.0 3.0 1.5 127 chr3R 26704779 intron amon - chr3R 26704842 intron amon - chr3R 26704906 intron amon - chr3R_6_26700001 chr3R_26700001 RAL-105 1129 chr3R 26770240 26770264 chr3R 26770317 26770341 5 77 2.0 1.0 1.5 2.0 101 chr3R 26770240 intergenic CR45563 + chr3R 26770290 intergenic CR45563 + chr3R 26770341 intergenic not near genes chr3R_5_26770001 chr3R_26770001 RAL-105 1130 chr3R 26795041 26795072 chr3R 26795126 26795156 6 82 0.5 2.0 1.2 2.7 115 chr3R 26795041 intergenic not near genes chr3R 26795098 intergenic not near genes chr3R 26795156 intergenic not near genes chr3R_6_26795001 chr3R_26795001 RAL-105 1131 chr3R 26816744 26816757 chr3R 26816837 26816850 4 93 3.5 2.0 2.8 1.1 106 chr3R 26816744 intron Tl + chr3R 26816797 intron Tl + chr3R 26816850 intron Tl + chr3R_4_26815001 chr3R_26815001 RAL-105 1132 chr3R 26831776 26831802 chr3R 26831940 26831966 5 158 3.0 5.5 4.2 1.0 190 chr3R 26831776 intron Tl + chr3R 26831871 intron Tl + chr3R 26831966 intron Tl + chr3R_5_26830001 chr3R_26830001 RAL-105 1133 chr3R 26845592 26845605 chr3R 26845656 26845684 7 76 0.5 1.0 0.8 3.9 92 chr3R 26845592 intron Lerp - chr3R 26845638 intron Lerp - chr3R 26845684 intron Lerp - chr3R_7_26845001 chr3R_26845001 RAL-105 1134 chr3R 27030221 27030245 chr3R 27030350 27030373 13 128 1.0 0.0 0.5 8.7 152 chr3R 27030221 intron RYa-R + chr3R 27030297 intron RYa-R + chr3R 27030373 intron RYa-R + chr3R_13_27030001 chr3R_27030001 RAL-105 1135 chr3R 27038616 27038624 chr3R 27038702 27038710 5 86 3.5 1.0 2.2 1.6 94 chr3R 27038616 intron RYa-R + chr3R 27038663 intron RYa-R + chr3R 27038710 intron RYa-R + chr3R_5_27035001 chr3R_27035001 RAL-105 1136 chr3R 27102059 27102072 chr3R 27102153 27102163 4 93 3.0 0.5 1.8 1.4 104 chr3R 27102059 intron CG17189 + chr3R 27102111 intron CG17189 + chr3R 27102163 intron CG17189 + chr3R_4_27100001 chr3R_27100001 RAL-105 1137 chr3R 27140520 27140548 chr3R 27148130 27148156 412 7 7609 5.0 7.0 6.0 1.0 7636 chr3R 27140520 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_7_27140001 chr3R_27140001 RAL-105 1138 chr3R 27327435 27327457 chr3R 27327514 27327536 4 79 2.0 3.5 2.8 1.1 101 chr3R 27327435 intergenic not near genes chr3R 27327486 intergenic not near genes chr3R 27327536 intergenic not near genes chr3R_4_27325001 chr3R_27325001 RAL-105 1139 chr3R 27342797 27342826 chr3R 27351378 27351405 Tirant 6 8580 2.0 1.5 1.8 2.1 8608 chr3R 27342797 intron CG42534 + chr3R 27347101 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-105 1140 chr3R 27418706 27418715 chr3R 27418790 27418819 4 98 4.5 5.0 4.8 0.7 113 chr3R 27418706 5` UTR side - chr3R 27418762 5` UTR side - chr3R 27418819 5` UTR side - chr3R_4_27415001 chr3R_27415001 RAL-105 1141 chr3R 27467050 27467070 chr3R 27467149 27467169 6 99 2.0 2.5 2.2 1.9 119 chr3R 27467050 3` UTR CG13978 + chr3R 27467110 intergenic CG13978 + chr3R 27467169 intergenic CG13978 + chr3R_6_27465001 chr3R_27465001 RAL-105 1142 chr3R 27595052 27595087 chr3R 27595135 27595170 11 81 2.5 1.0 1.8 3.9 118 chr3R 27595052 intron CG5639 - chr3R 27595111 intron CG5639 - chr3R 27595170 intron CG5639 - chr3R_11_27595001 chr3R_27595001 RAL-105 1143 chr3R 27619701 27619730 chr3R 27619813 27619845 14 114 3.0 3.0 3.0 3.5 144 chr3R 27619701 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619845 intron Tusp + chr3R_14_27615001 chr3R_27615001 RAL-105 1144 chr3R 27705357 27705391 chr3R 27705437 27705467 12 78 3.5 1.5 2.5 3.4 110 chr3R 27705357 exon CG12428 - chr3R 27705412 intron CG12428 - chr3R 27705467 exon CG12428 - chr3R_12_27705001 chr3R_27705001 RAL-105 1145 chr3R 27771120 27771129 chr3R 27775779 27775800 4 4664 15.5 28.5 22.0 0.2 4680 chr3R 27771120 intron CG34353 - chr3R 27773460 intron CG34353 - chr3R 27775800 intron CG34353 - chr3R_4_27770001 chr3R_27770001 RAL-105 1146 chr3R 27799944 27799961 chr3R 27800026 27800043 6 82 1.5 2.0 1.8 2.1 99 chr3R 27799944 intron CG34353 - chr3R 27799994 intron CG34353 - chr3R 27800043 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-105 1147 chr3R 27820034 27820054 chr3R 27820119 27820140 6 86 1.0 2.0 1.5 2.4 106 chr3R 27820034 intron CG34353 - chr3R 27820087 intron CG34353 - chr3R 27820140 intron CG34353 - chr3R_6_27820001 chr3R_27820001 RAL-105 1148 chr3R 27856763 27856781 chr3R 27858245 27858264 hopper2 7 1483 2.5 0.5 1.5 2.8 1501 chr3R 27856763 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858264 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-105 1149 chr3R 27862953 27862987 chr3R 27868258 27868288 Transpac 7 5302 1.0 1.5 1.2 3.2 5335 chr3R 27862953 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-105 1150 chr3R 27875700 27875732 chr3R 27882755 27882787 297 5 7055 2.0 2.0 2.0 1.7 7087 chr3R 27875700 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-105 1151 chr3R 27911248 27911259 chr3R 27911326 27911335 4 77 2.0 2.0 2.0 1.3 87 chr3R 27911248 intergenic not near genes chr3R 27911292 intergenic not near genes chr3R 27911335 intergenic not near genes chr3R_4_27910001 chr3R_27910001 RAL-105 1152 chr3R 27983276 27983306 chr3R 27983352 27983382 5 76 3.5 3.0 3.2 1.2 106 chr3R 27983276 intron betaTub97EF - chr3R 27983329 intron betaTub97EF - chr3R 27983382 intron betaTub97EF - chr3R_5_27980001 chr3R_27980001 RAL-105 1153 chr3R 28016647 28016678 chr3R 28016737 28016768 7 90 1.0 0.5 0.8 3.9 121 chr3R 28016647 intergenic not near genes chr3R 28016708 intergenic not near genes chr3R 28016768 intergenic not near genes chr3R_7_28015001 chr3R_28015001 RAL-105 1154 chr3R 28035492 28035498 chr3R 28035569 28035575 4 77 2.5 3.5 3.0 1.0 83 chr3R 28035492 intron CG34362 + chr3R 28035534 intron CG34362 + chr3R 28035575 intron CG34362 + chr3R_4_28035001 chr3R_28035001 RAL-105 1155 chr3R 28068495 28068524 chr3R 28073936 28073966 I-element 5 5442 2.0 3.0 2.5 1.4 5471 chr3R 28068495 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073966 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-105 1156 chr3R 28124164 28124185 chr3R 28124253 28124274 4 89 2.0 2.0 2.0 1.3 110 chr3R 28124164 intergenic not near genes chr3R 28124219 intergenic not near genes chr3R 28124274 intergenic not near genes chr3R_4_28120001 chr3R_28120001 RAL-105 1157 chr3R 28173673 28173700 chr3R 28181103 28181130 mdg1 4 7430 0.0 2.5 1.2 1.8 7457 chr3R 28173673 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181130 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-105 1158 chr3R 28253343 28253365 chr3R 28255851 28255874 jockey 6 2510 5.0 2.5 3.8 1.2 2531 chr3R 28253343 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255874 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-105 1159 chr3R 28286320 28286346 chr3R 28286406 28286433 7 87 2.5 3.0 2.8 1.8 113 chr3R 28286320 intergenic not near genes chr3R 28286376 intergenic not near genes chr3R 28286433 intergenic not near genes chr3R_7_28285001 chr3R_28285001 RAL-105 1160 chr3R 28308077 28308083 chr3R 28308152 28308157 4 76 5.5 8.5 7.0 0.5 80 chr3R 28308077 intergenic not near genes chr3R 28308117 intergenic not near genes chr3R 28308157 intergenic not near genes chr3R_4_28305001 chr3R_28305001 RAL-105 1161 chr3R 28352366 28352389 chr3R 28352749 28352772 10 379 5.5 4.0 4.8 1.7 406 chr3R 28352366 exon Or98b + chr3R 28352569 intron Or98b + chr3R 28352772 exon Or98b + chr3R_10_28350001 chr3R_28350001 RAL-105 1162 chr3R 28368978 28369011 chr3R 28369056 28369095 8 82 2.0 0.0 1.0 4.0 117 chr3R 28368978 intergenic not near genes chr3R 28369036 intergenic not near genes chr3R 28369095 intergenic not near genes chr3R_8_28365001 chr3R_28365001 RAL-105 1163 chr3R 28376102 28376128 chr3R 28376627 28376653 5 524 2.0 3.0 2.5 1.4 551 chr3R 28376102 intergenic not near genes chr3R 28376378 intergenic not near genes chr3R 28376653 intergenic not near genes chr3R_5_28375001 chr3R_28375001 RAL-105 1164 chr3R 28395561 28395593 chr3R 28395654 28395688 11 91 1.5 2.5 2.0 3.7 127 chr3R 28395561 intergenic not near genes chr3R 28395624 intergenic not near genes chr3R 28395688 intergenic not near genes chr3R_11_28395001 chr3R_28395001 RAL-105 1165 chr3R 28466174 28466196 chr3R 28466479 28466501 10 304 2.5 3.0 2.8 2.6 327 chr3R 28466174 intron beat-VI + chr3R 28466338 intron beat-VI + chr3R 28466501 intron beat-VI + chr3R_10_28465001 chr3R_28465001 RAL-105 1166 chr3R 28475404 28475432 chr3R 28475476 28475508 8 76 0.5 3.5 2.0 2.7 104 chr3R 28475404 intergenic not near genes chr3R 28475456 intergenic not near genes chr3R 28475508 intergenic not near genes chr3R_8_28475001 chr3R_28475001 RAL-105 1167 chr3R 28591285 28591309 chr3R 28591379 28591402 5 94 1.5 1.5 1.5 2.0 117 chr3R 28591285 5` UTR MRE23 + chr3R 28591344 5` UTR MRE23 + chr3R 28591402 intergenic MRE23 + chr3R_5_28590001 chr3R_28590001 RAL-105 1168 chr3R 28597489 28597524 chr3R 28597566 28597588 9 73 4.0 5.0 4.5 1.6 99 chr3R 28597489 intergenic not near genes chr3R 28597538 intergenic not near genes chr3R 28597588 intergenic Noa36 - chr3R_9_28595001 chr3R_28595001 RAL-105 1169 chr3R 28658495 28658517 chr3R 28658644 28658666 10 149 6.0 4.0 5.0 1.7 171 chr3R 28658495 intergenic not near genes chr3R 28658580 intergenic not near genes chr3R 28658666 intergenic not near genes chr3R_10_28655001 chr3R_28655001 RAL-105 1170 chr3R 28687963 28687990 chr3R 28688054 28688079 9 91 2.0 1.0 1.5 3.6 116 chr3R 28687963 intron CG9990 + chr3R 28688021 intron CG9990 + chr3R 28688079 intron CG9990 + chr3R_9_28685001 chr3R_28685001 RAL-105 1171 chr3R 28696477 28696510 chr3R 28696556 28696589 13 79 2.5 1.5 2.0 4.3 112 chr3R 28696477 intron htt + chr3R 28696533 intron htt + chr3R 28696589 intron htt + chr3R_13_28695001 chr3R_28695001 RAL-105 1172 chr3R 28698184 28698208 chr3R 28698266 28698289 6 81 1.5 3.5 2.5 1.7 105 chr3R 28698184 intron htt + chr3R 28698236 intron htt + chr3R 28698289 intron htt + chr3R_6_28695001 chr3R_28695001 RAL-105 1173 chr3R 21907534 21907536 chr3R 28831799 28831802 43 6924266 13.5 12.0 12.8 3.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-105 1174 chr3R 28947975 28947996 chr3R 28948087 28948108 4 112 0.5 2.5 1.5 1.6 133 chr3R 28947975 intron CG14521 - chr3R 28948042 intron CG14521 - chr3R 28948108 intron CG14521 - chr3R_4_28945001 chr3R_28945001 RAL-105 1175 chr3R 28989905 28989929 chr3R 28990078 28990101 8 172 2.0 1.5 1.8 2.9 196 chr3R 28989905 intergenic not near genes chr3R 28990003 intergenic not near genes chr3R 28990101 intergenic not near genes chr3R_8_28990001 chr3R_28990001 RAL-105 1176 chr3R 29017415 29017448 chr3R 29017497 29017526 12 81 4.0 4.0 4.0 2.4 111 chr3R 29017415 intron wat - chr3R 29017470 intron wat - chr3R 29017526 intron wat - chr3R_12_29015001 chr3R_29015001 RAL-105 1177 chr3R 29032749 29032758 chr3R 29032826 29032830 4 76 6.0 0.5 3.2 1.0 81 chr3R 29032749 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032790 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032830 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-105 1178 chr3R 29032761 29032774 chr3R 29032824 29032850 4 72 4.0 0.5 2.2 1.2 89 chr3R 29032761 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032806 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032850 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_4_29030001 chr3R_29030001 RAL-105 1179 chr3R 29079395 29079407 chr3R 29080751 29080779 NOF 8 1370 0.5 2.5 1.5 3.2 1384 chr3R 29079395 intron CG11873 + chr3R 29080087 intron CG11873 + chr3R 29080779 intron CG11873 + chr3R_8_29080001 chr3R_29080001 RAL-105 1180 chr3R 29140045 29140075 chr3R 29140267 29140297 7 222 2.0 1.0 1.5 2.8 252 chr3R 29140045 intron CG14516 + chr3R 29140171 intron CG14516 + chr3R 29140297 intron CG14516 + chr3R_7_29140001 chr3R_29140001 RAL-105 1181 chr3R 29187694 29187722 chr3R 29187771 29187800 8 77 0.0 2.0 1.0 4.0 106 chr3R 29187694 intron CG14509 - chr3R 29187747 intron CG14509 - chr3R 29187800 intron CG14509 - chr3R_8_29185001 chr3R_29185001 RAL-105 1182 chr3R 29237247 29237281 chr3R 29239268 29239301 8 2021 13.5 2.5 8.0 0.9 2054 chr3R 29237247 exon CG11951 - chr3R 29238274 intron CG11951 - chr3R 29239301 exon CG31427 - chr3R_8_29235001 chr3R_29235001 RAL-105 1183 chr3R 29245664 29245675 chr3R 29245739 29245744 5 74 24.5 20.0 22.2 0.2 80 chr3R 29245664 exon SP1029 - chr3R 29245704 exon SP1029 - chr3R 29245744 exon SP1029 - chr3R_5_29245001 chr3R_29245001 RAL-105 1184 chr3R 29306179 29306195 chr3R 29306257 29306273 4 78 0.5 4.0 2.2 1.2 94 chr3R 29306179 intergenic not near genes chr3R 29306226 intergenic not near genes chr3R 29306273 intergenic not near genes chr3R_4_29305001 chr3R_29305001 RAL-105 1185 chr3R 29362174 29362189 chr3R 29362249 29362275 7 82 4.0 5.0 4.5 1.3 101 chr3R 29362174 intergenic not near genes chr3R 29362224 intergenic not near genes chr3R 29362275 intergenic not near genes chr3R_7_29360001 chr3R_29360001 RAL-105 1186 chr3R 29389347 29389366 chr3R 29389428 29389455 5 85 3.5 2.5 3.0 1.2 108 chr3R 29389347 intron Ptp99A + chr3R 29389401 intron Ptp99A + chr3R 29389455 intron Ptp99A + chr3R_5_29385001 chr3R_29385001 RAL-105 1187 chr3R 29406618 29406626 chr3R 29407903 29407912 jockey 4 1286 7.0 1.5 4.2 0.8 1294 chr3R 29406618 intron Ptp99A + chr3R 29407265 intron Ptp99A + chr3R 29407912 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-105 1188 chr3R 29406631 29406649 chr3R 29407899 29407929 jockey 8 1283 5.0 1.0 3.0 2.0 1298 chr3R 29406631 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-105 1189 chr3R 29472013 29472040 chr3R 29472105 29472129 5 90 1.5 0.5 1.0 2.5 116 chr3R 29472013 intron Ptp99A + chr3R 29472071 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-105 1190 chr3R 29505896 29505924 chr3R 29505973 29506001 4 74 1.5 2.0 1.8 1.4 105 chr3R 29505896 intergenic not near genes chr3R 29505948 intergenic not near genes chr3R 29506001 intergenic not near genes chr3R_4_29505001 chr3R_29505001 RAL-105 1191 chr3R 29529611 29529638 chr3R 29529689 29529716 7 75 0.0 2.0 1.0 3.5 105 chr3R 29529611 intergenic not near genes chr3R 29529664 intergenic not near genes chr3R 29529716 intergenic not near genes chr3R_7_29525001 chr3R_29525001 RAL-105 1192 chr3R 29539430 29539452 chr3R 29539506 29539528 5 76 1.0 0.0 0.5 3.3 98 chr3R 29539430 intergenic not near genes chr3R 29539479 intergenic not near genes chr3R 29539528 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-105 1193 chr3R 29708560 29708588 chr3R 29708638 29708666 9 77 2.5 2.0 2.2 2.8 106 chr3R 29708560 intergenic not near genes chr3R 29708613 intergenic not near genes chr3R 29708666 intergenic not near genes chr3R_9_29705001 chr3R_29705001 RAL-105 1194 chr3R 29738273 29738286 chr3R 29739740 29739753 hobo 4 1467 2.0 4.0 3.0 1.0 1480 chr3R 29738273 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739753 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-105 1195 chr3R 29882020 29882051 chr3R 29891177 29891208 roo 5 9157 0.0 1.0 0.5 3.3 9188 chr3R 29882020 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-105 1196 chr3R 29905085 29905111 chr3R 29905164 29905191 5 80 1.5 1.0 1.2 2.3 106 chr3R 29905085 intergenic CG15515 + chr3R 29905138 intergenic CG15515 + chr3R 29905191 intergenic CG15515 + chr3R_5_29905001 chr3R_29905001 RAL-105 1197 chr3R 29963476 29963506 chr3R 29963577 29963608 10 102 3.0 3.5 3.2 2.4 132 chr3R 29963476 intron TkR99D - chr3R 29963542 intron TkR99D - chr3R 29963608 intron TkR99D - chr3R_10_29960001 chr3R_29960001 RAL-105 1198 chr3R 29966066 29966075 chr3R 29966143 29966148 4 76 5.0 4.5 4.8 0.7 82 chr3R 29966066 intron TkR99D - chr3R 29966107 intron TkR99D - chr3R 29966148 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-105 1199 chr3R 30084856 30084873 chr3R 30086323 30086340 hobo 7 1464 3.5 3.5 3.5 1.6 1484 chr3R 30084856 intron sima + chr3R 30085598 intron sima + chr3R 30086340 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-105 1200 chr3R 30156868 30156899 chr3R 30156947 30156977 12 78 2.0 1.0 1.5 4.8 109 chr3R 30156868 intron CG11498 - chr3R 30156922 intron CG11498 - chr3R 30156977 intron CG11498 - chr3R_12_30155001 chr3R_30155001 RAL-105 1201 chr3R 30175710 30175720 chr3R 30175796 30175806 5 86 0.0 2.0 1.0 2.5 96 chr3R 30175710 intergenic CG1983 - chr3R 30175758 intergenic CG1983 - chr3R 30175806 3` UTR CG1983 - chr3R_5_30175001 chr3R_30175001 RAL-105 1202 chr3R 30263457 30263464 chr3R 30263645 30263652 4 188 4.0 3.5 3.8 0.8 195 chr3R 30263457 intergenic not near genes chr3R 30263554 intergenic not near genes chr3R 30263652 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-105 1203 chr3R 30307117 30307154 chr3R 30307198 30307235 11 80 1.5 3.0 2.2 3.4 118 chr3R 30307117 intron hdc + chr3R 30307176 intron hdc + chr3R 30307235 intron hdc + chr3R_11_30305001 chr3R_30305001 RAL-105 1204 chr3R 30317331 30317354 chr3R 30324923 30324946 roo 7 7592 0.5 4.0 2.2 2.2 7615 chr3R 30317331 intron hdc + chr3R 30321138 intron hdc + chr3R 30324946 intron hdc + chr3R_7_30320001 chr3R_30320001 RAL-105 1205 chr3R 30332030 30332059 chr3R 30332109 30332133 7 78 5.5 2.5 4.0 1.4 103 chr3R 30332030 intron hdc + chr3R 30332082 intron hdc + chr3R 30332133 intron hdc + chr3R_7_30330001 chr3R_30330001 RAL-105 1206 chr3R 30480486 30480511 chr3R 30482950 30482979 jockey 10 2467 4.0 3.0 3.5 2.2 2493 chr3R 30480486 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-105 1207 chr3R 30627609 30627635 chr3R 30627682 30627714 4 70 2.0 6.0 4.0 0.8 105 chr3R 30627609 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627714 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-105 1208 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 10 7469 3.0 1.5 2.2 3.1 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_10_30680001 chr3R_30680001 RAL-105 1209 chr3R 30690163 30690190 chr3R 30690244 30690274 15 83 4.0 2.0 3.0 3.8 111 chr3R 30690163 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690274 intergenic Spn100A + chr3R_15_30690001 chr3R_30690001 RAL-105 1210 chr3R 30818812 30818834 chr3R 30820377 30820399 1360 5 1564 1.5 1.0 1.2 2.3 1587 chr3R 30818812 intron cindr + chr3R 30819606 intron cindr + chr3R 30820399 intron cindr + chr3R_5_30815001 chr3R_30815001 RAL-105 1211 chr3R 30833973 30833994 chr3R 30834050 30834071 5 77 4.0 0.0 2.0 1.7 98 chr3R 30833973 intron CG15544 + chr3R 30834022 intron CG15544 + chr3R 30834071 intron CG15544 + chr3R_5_30830001 chr3R_30830001 RAL-105 1212 chr3R 30896172 30896192 chr3R 30896259 30896288 6 94 3.5 1.5 2.5 1.7 116 chr3R 30896172 intron Cyp4c3 + chr3R 30896230 intron Cyp4c3 + chr3R 30896288 intron Cyp4c3 + chr3R_6_30895001 chr3R_30895001 RAL-105 1213 chr3R 30994126 30994143 chr3R 30994236 30994253 6 110 5.5 0.5 3.0 1.5 127 chr3R 30994126 intron 5-HT7 - chr3R 30994190 intron 5-HT7 - chr3R 30994253 intron 5-HT7 - chr3R_6_30990001 chr3R_30990001 RAL-105 1214 chr3R 31029700 31029715 chr3R 31029778 31029800 4 83 2.5 2.0 2.2 1.2 100 chr3R 31029700 intergenic not near genes chr3R 31029750 intergenic not near genes chr3R 31029800 intergenic not near genes chr3R_4_31025001 chr3R_31025001 RAL-105 1215 chr3R 31037405 31037430 chr3R 31041826 31041851 12 4422 27.5 29.5 28.5 0.4 4446 chr3R 31037405 intergenic not near genes chr3R 31039628 intron CanA1 + chr3R 31041851 exon CanA1 + chr3R_12_31035001 chr3R_31035001 RAL-105 1216 chr3R 31186610 31186635 chr3R 31187090 31187115 5 481 0.5 3.5 2.0 1.7 505 chr3R 31186610 intron mesh - chr3R 31186862 intron mesh - chr3R 31187115 intron mesh - chr3R_5_31185001 chr3R_31185001 RAL-105 1217 chr3R 31413087 31413092 chr3R 31418287 31418289 copia 4 5199 6.5 0.0 3.2 1.0 5202 chr3R 31413087 intron Gprk2 + chr3R 31415688 intron Gprk2 + chr3R 31418289 intron Gprk2 + chr3R_4_31415001 chr3R_31415001 RAL-105 1218 chr3R 31482369 31482399 chr3R 31482448 31482452 11 73 4.0 2.0 3.0 2.8 83 chr3R 31482369 intergenic not near genes chr3R 31482410 intergenic not near genes chr3R 31482452 intergenic not near genes chr3R_11_31480001 chr3R_31480001 RAL-105 1219 chr3R 31518556 31518587 chr3R 31518634 31518666 15 80 1.5 2.0 1.8 5.4 110 chr3R 31518556 intergenic not near genes chr3R 31518611 intergenic not near genes chr3R 31518666 intergenic not near genes chr3R_15_31515001 chr3R_31515001 RAL-105 1220 chr3R 31530817 31530845 chr3R 31531144 31531159 11 322 2.5 5.5 4.0 2.2 342 chr3R 31530817 intergenic not near genes chr3R 31530988 intergenic not near genes chr3R 31531159 intergenic not near genes chr3R_11_31530001 chr3R_31530001 RAL-105 1221 chr3R 31538488 31538522 chr3R 31538566 31538600 8 78 1.0 2.5 1.8 2.9 112 chr3R 31538488 intergenic not near genes chr3R 31538544 intergenic not near genes chr3R 31538600 intergenic not near genes chr3R_8_31535001 chr3R_31535001 RAL-105 1222 chr3R 31615165 31615188 chr3R 31615341 31615364 7 176 1.5 3.0 2.2 2.2 199 chr3R 31615165 3` UTR Med + chr3R 31615264 3` UTR Med + chr3R 31615364 3` UTR,3` UTR Med +,CG11539 - chr3R_7_31615001 chr3R_31615001 RAL-105 1223 chr3R 31691532 31691551 chr3R 31696297 31696317 Doc 7 4765 6.0 6.5 6.2 1.0 4785 chr3R 31691532 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696317 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-105 1224 chr3R 31691556 31691563 chr3R 31696296 31696329 Doc 4 4753 3.5 6.5 5.0 0.7 4773 chr3R 31691556 intergenic not near genes chr3R 31693942 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-105 1225 chr3R 31699718 31699753 chr3R 31699799 31699835 10 81 2.0 0.0 1.0 5.0 117 chr3R 31699718 intergenic not near genes chr3R 31699776 intergenic not near genes chr3R 31699835 intergenic not near genes chr3R_10_31695001 chr3R_31695001 RAL-105 1226 chr3R 31831547 31831568 chr3R 31831615 31831647 7 77 3.5 3.0 3.2 1.7 100 chr3R 31831547 intron RhoGAP100F + chr3R 31831597 intron RhoGAP100F + chr3R 31831647 intron RhoGAP100F + chr3R_7_31830001 chr3R_31830001 RAL-105 1227 chr3R 31930558 31930585 chr3R 31930640 31930666 7 81 4.5 2.5 3.5 1.6 108 chr3R 31930558 intron heph - chr3R 31930612 intron heph - chr3R 31930666 intron heph - chr3R_7_31930001 chr3R_31930001 RAL-105 1228 chr3R 31997995 31998007 chr3R 32005465 32005477 blood 6 7470 2.5 1.5 2.0 2.0 7482 chr3R 31997995 intron heph - chr3R 32001736 intron heph - chr3R 32005477 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-105 1229 chr3R 32034259 32034291 chr3R 32034342 32034374 8 82 2.5 1.5 2.0 2.7 115 chr3R 32034259 intergenic not near genes chr3R 32034316 intergenic not near genes chr3R 32034374 intergenic not near genes chr3R_8_32030001 chr3R_32030001 RAL-105 1230 chr4 671608 671638 chr4 680191 680221 Tirant 12 8582 1.0 2.0 1.5 4.8 8613 chr4 671608 intron CG11360 + chr4 675914 intron CG11360 + chr4 680221 intron CG11360 + chr4_12_675001 chr4_675001 RAL-105 1231 chr4 959623 959657 chr4 959801 959836 5 179 0.5 1.0 0.8 2.8 213 chr4 959623 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959836 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-105 1232 chrX 318472 318492 chrX 323556 323576 flea 4 5085 0.0 1.0 0.5 2.7 5104 chrX 318472 intron,intron CG3777 +,CG32816 - chrX 321024 intron,intron CG3777 +,CG32816 - chrX 323576 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-105 1233 chrX 440996 441023 chrX 441074 441101 9 78 1.0 1.0 1.0 4.5 105 chrX 440996 intron CG32816 - chrX 441048 intron CG32816 - chrX 441101 intron CG32816 - chrX_9_440001 chrX_440001 RAL-105 1234 chrX 450366 450395 chrX 450444 450473 6 78 0.5 1.0 0.8 3.3 107 chrX 450366 intron CG32816 - chrX 450420 intron CG32816 - chrX 450473 intron CG32816 - chrX_6_450001 chrX_450001 RAL-105 1235 chrX 478663 478667 chrX 478809 478834 4 158 1.5 4.5 3.0 1.0 171 chrX 478663 intergenic CG32817 +,CG13373 + chrX 478748 intergenic CG32817 + chrX 478834 intergenic CG32817 + chrX_4_475001 chrX_475001 RAL-105 1236 chrX 480555 480560 chrX 483540 483547 4 2983 12.0 13.5 12.8 0.3 2992 chrX 480555 intergenic CG32817 + chrX 482051 intron CG3176 + chrX 483547 exon CG18273 - chrX_4_480001 chrX_480001 RAL-105 1237 chrX 494601 494634 chrX 494693 494726 4 92 1.0 1.5 1.2 1.8 125 chrX 494601 intergenic CG17778 + chrX 494664 5` UTR CG17778 + chrX 494726 intron CG17778 + chrX_4_490001 chrX_490001 RAL-105 1238 chrX 547630 547666 chrX 547874 547910 5 244 1.0 2.0 1.5 2.0 280 chrX 547630 intron Appl + chrX 547770 intron Appl + chrX 547910 intron Appl + chrX_5_545001 chrX_545001 RAL-105 1239 chrX 551420 551447 chrX 558982 559005 412 4 7558 7.0 2.0 4.5 0.7 7585 chrX 551420 intron Appl + chrX 555212 intron Appl + chrX 559005 intron Appl + chrX_4_555001 chrX_555001 RAL-105 1240 chrX 670264 670286 chrX 670344 670365 11 79 0.0 1.0 0.5 7.3 101 chrX 670264 intergenic not near genes chrX 670314 intergenic not near genes chrX 670365 intergenic not near genes chrX_11_670001 chrX_670001 RAL-105 1241 chrX 680838 680871 chrX 680921 680954 15 82 2.0 3.5 2.8 3.9 116 chrX 680838 intergenic not near genes chrX 680896 intergenic not near genes chrX 680954 intergenic not near genes chrX_15_680001 chrX_680001 RAL-105 1242 chrX 778128 778159 chrX 778218 778249 10 90 4.5 0.5 2.5 2.9 121 chrX 778128 intron fz3 + chrX 778188 intron fz3 + chrX 778249 intron fz3 + chrX_10_775001 chrX_775001 RAL-105 1243 chrX 802300 802319 chrX 802362 802396 9 75 3.5 2.5 3.0 2.2 96 chrX 802300 exon CG13359 - chrX 802348 exon CG13359 - chrX 802396 exon CG13359 - chrX_9_800001 chrX_800001 RAL-105 1244 chrX 806782 806813 chrX 806878 806908 8 96 6.0 1.5 3.8 1.7 126 chrX 806782 intron Sec22 + chrX 806845 intron Sec22 + chrX 806908 intron Sec22 + chrX_8_805001 chrX_805001 RAL-105 1245 chrX 827600 827635 chrX 835391 835425 roo 7 7791 1.5 0.0 0.8 3.9 7825 chrX 827600 intron CG43867 - chrX 831512 intron CG43867 - chrX 835425 intron CG43867 - chrX_7_830001 chrX_830001 RAL-105 1246 chrX 1357779 1357804 chrX 1367949 1367974 Doc 4 10169 1.5 2.5 2.0 1.3 10195 chrX 1357779 intergenic png - chrX 1362876 intergenic not near genes chrX 1367974 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-105 1247 chrX 1402263 1402290 chrX 1402621 1402648 6 356 4.5 1.5 3.0 1.5 385 chrX 1402263 intergenic not near genes chrX 1402456 intergenic not near genes chrX 1402648 intergenic not near genes chrX_6_1400001 chrX_1400001 RAL-105 1248 chrX 1428592 1428618 chrX 1428678 1428704 8 86 3.0 2.0 2.5 2.3 112 chrX 1428592 intron futsch + chrX 1428648 intron futsch + chrX 1428704 intron futsch + chrX_8_1425001 chrX_1425001 RAL-105 1249 chrX 1518042 1518074 chrX 1523444 1523476 jockey 4 5401 1.0 5.5 3.2 1.0 5434 chrX 1518042 intergenic inc + chrX 1520759 intergenic not near genes chrX 1523476 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-105 1250 chrX 1627987 1627997 chrX 1635440 1635465 gtwin 8 7465 5.5 3.0 4.2 1.5 7478 chrX 1627987 intron,intron Mur2B -,br + chrX 1631726 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_8_1630001 chrX_1630001 RAL-105 1251 chrX 1726669 1726679 chrX 1726775 1726786 4 107 3.0 2.0 2.5 1.1 117 chrX 1726669 intergenic not near genes chrX 1726728 intergenic not near genes chrX 1726786 intergenic not near genes chrX_4_1725001 chrX_1725001 RAL-105 1252 chrX 1790613 1790643 chrX 1790694 1790724 8 79 4.5 3.0 3.8 1.7 111 chrX 1790613 intron CG42666 + chrX 1790668 intron CG42666 + chrX 1790724 intron CG42666 + chrX_8_1790001 chrX_1790001 RAL-105 1253 chrX 1987486 1987505 chrX 1987590 1987609 5 104 1.0 0.5 0.8 2.8 123 chrX 1987486 intron Hr4 + chrX 1987548 intron Hr4 + chrX 1987609 intron Hr4 + chrX_5_1985001 chrX_1985001 RAL-105 1254 chrX 2146655 2146684 chrX 2146745 2146764 6 90 1.5 3.5 2.5 1.7 109 chrX 2146655 intron Pgd + chrX 2146710 intron Pgd + chrX 2146764 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-105 1255 chrX 2399844 2399865 chrX 2408197 2408204 roo 5 8349 2.5 0.0 1.2 2.3 8360 chrX 2399844 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408204 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-105 1256 chrX 2578812 2578841 chrX 2578904 2578933 9 91 1.5 2.0 1.8 3.2 121 chrX 2578812 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578933 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-105 1257 chrX 2662169 2662192 chrX 2662268 2662274 6 96 3.0 2.5 2.8 1.6 105 chrX 2662169 intron sgg + chrX 2662222 intron sgg + chrX 2662274 intron sgg + chrX_6_2660001 chrX_2660001 RAL-105 1258 chrX 2888111 2888147 chrX 2888189 2888222 6 77 2.0 2.0 2.0 2.0 111 chrX 2888111 intron kirre + chrX 2888166 intron kirre + chrX 2888222 intron kirre + chrX_6_2885001 chrX_2885001 RAL-105 1259 chrX 2917414 2917446 chrX 2917570 2917603 7 157 2.0 1.0 1.5 2.8 189 chrX 2917414 intron kirre + chrX 2917508 intron kirre + chrX 2917603 intron kirre + chrX_7_2915001 chrX_2915001 RAL-105 1260 chrX 3415029 3415049 chrX 3421214 3421234 3S18 6 6185 0.5 0.5 0.5 4.0 6205 chrX 3415029 intron,intron CR44999 +,CG12535 - chrX 3418132 intron,intron CR44999 +,CG12535 - chrX 3421234 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-105 1261 chrX 3437430 3437453 chrX 3437506 3437529 5 76 0.5 3.0 1.8 1.8 99 chrX 3437430 intron,intron CR44999 +,CG12535 - chrX 3437480 intron,intron CR44999 +,CG12535 - chrX 3437529 intron,intron CR44999 +,CG12535 - chrX_5_3435001 chrX_3435001 RAL-105 1262 chrX 3493089 3493121 chrX 3502248 3502280 roo 7 9159 2.5 1.0 1.8 2.5 9191 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-105 1263 chrX 3597111 3597131 chrX 3597199 3597219 4 88 0.5 0.5 0.5 2.7 108 chrX 3597111 intron AstA-R1 + chrX 3597165 intron AstA-R1 + chrX 3597219 intron AstA-R1 + chrX_4_3595001 chrX_3595001 RAL-105 1264 chrX 3597550 3597580 chrX 3619718 3619748 roo 5 22168 3.0 2.0 2.5 1.4 22198 chrX 3597550 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-105 1265 chrX 3726775 3726790 chrX 3730159 3730187 NOF 4 3392 1.0 3.0 2.0 1.3 3412 chrX 3726775 intron tlk + chrX 3728481 intron tlk + chrX 3730187 intron tlk + chrX_4_3725001 chrX_3725001 RAL-105 1266 chrX 3986875 3986889 chrX 3994508 3994522 412 4 7632 5.5 2.0 3.8 0.8 7647 chrX 3986875 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994522 intergenic not near genes chrX_4_3990001 chrX_3990001 RAL-105 1267 chrX 3994807 3994827 chrX 3994960 3994980 6 153 2.5 4.5 3.5 1.3 173 chrX 3994807 intergenic not near genes chrX 3994894 intergenic not near genes chrX 3994980 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-105 1268 chrX 4047468 4047476 chrX 4047581 4047589 6 113 10.0 6.0 8.0 0.7 121 chrX 4047468 intergenic CR45482 - chrX 4047528 intergenic CR45482 - chrX 4047589 intergenic CR45482 - chrX_6_4045001 chrX_4045001 RAL-105 1269 chrX 4047479 4047498 chrX 4047580 4047610 6 109 2.0 5.0 3.5 1.3 131 chrX 4047479 intergenic CR45482 - chrX 4047544 intergenic CR45482 - chrX 4047610 3` UTR CR45482 - chrX_6_4045001 chrX_4045001 RAL-105 1270 chrX 4048505 4048523 chrX 4048581 4048599 7 76 2.5 1.0 1.8 2.5 94 chrX 4048505 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048599 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-105 1271 chrX 4280971 4280997 chrX 4281104 4281129 7 132 1.5 1.0 1.2 3.2 158 chrX 4280971 intergenic not near genes chrX 4281050 intergenic not near genes chrX 4281129 intergenic not near genes chrX_7_4280001 chrX_4280001 RAL-105 1272 chrX 4324399 4324415 chrX 4324476 4324491 4 76 0.0 2.0 1.0 2.0 92 chrX 4324399 intron norpA + chrX 4324445 intron norpA + chrX 4324491 intron norpA + chrX_4_4320001 chrX_4320001 RAL-105 1273 chrX 4396984 4397010 chrX 4397069 4397095 7 85 3.0 3.0 3.0 1.8 111 chrX 4396984 intron CR32773 - chrX 4397040 intron CR32773 - chrX 4397095 intron CR32773 - chrX_7_4395001 chrX_4395001 RAL-105 1274 chrX 4436457 4436467 chrX 4436533 4436543 5 76 3.5 0.0 1.8 1.8 86 chrX 4436457 intron,intron CR32773 -,bi + chrX 4436500 intron,intron CR32773 -,bi + chrX 4436543 intron,intron CR32773 -,bi + chrX_5_4435001 chrX_4435001 RAL-105 1275 chrX 4723574 4723586 chrX 4723654 4723666 4 80 6.5 3.0 4.8 0.7 92 chrX 4723574 intron Proc-R + chrX 4723620 intron Proc-R + chrX 4723666 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-105 1276 chrX 4731813 4731828 chrX 4736906 4736921 jockey 6 5093 2.0 1.0 1.5 2.4 5108 chrX 4731813 intergenic not near genes chrX 4734367 intergenic not near genes chrX 4736921 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-105 1277 chrX 4763259 4763278 chrX 4763747 4763766 Stalker4 6 488 2.0 2.5 2.2 1.9 507 chrX 4763259 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763766 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-105 1278 chrX 4792383 4792405 chrX 4792816 4792838 jockey 4 433 3.5 4.0 3.8 0.8 455 chrX 4792383 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792838 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-105 1279 chrX 4885773 4885807 chrX 4885866 4885881 12 82 4.0 1.5 2.8 3.2 108 chrX 4885773 intron CG42594 + chrX 4885827 intron CG42594 + chrX 4885881 intron CG42594 + chrX_12_4885001 chrX_4885001 RAL-105 1280 chrX 4901552 4901582 chrX 4901833 4901863 12 281 0.5 0.0 0.2 10.0 311 chrX 4901552 intron CG42594 + chrX 4901708 intron CG42594 + chrX 4901863 intron CG42594 + chrX_12_4900001 chrX_4900001 RAL-105 1281 chrX 4931348 4931378 chrX 4931442 4931472 5 94 8.5 6.5 7.5 0.6 124 chrX 4931348 intron CG44774 - chrX 4931410 intron CG44774 - chrX 4931472 intron CG44774 - chrX_5_4930001 chrX_4930001 RAL-105 1282 chrX 5131403 5131426 chrX 5131483 5131507 7 80 3.5 4.0 3.8 1.5 104 chrX 5131403 intron,intron CG15465 +,rg + chrX 5131455 intron,intron CG15465 +,rg + chrX 5131507 intron,intron CG15465 +,rg + chrX_7_5130001 chrX_5130001 RAL-105 1283 chrX 5277496 5277512 chrX 5277871 5277871 6 372 3.5 4.0 3.8 1.2 375 chrX 5277496 intergenic not near genes chrX 5277684 intergenic not near genes chrX 5277871 intergenic not near genes chrX_6_5275001 chrX_5275001 RAL-105 1284 chrX 5798865 5798891 chrX 5799026 5799053 6 161 1.0 1.0 1.0 3.0 188 chrX 5798865 intergenic not near genes chrX 5798959 intergenic not near genes chrX 5799053 intergenic not near genes chrX_6_5795001 chrX_5795001 RAL-105 1285 chrX 5886447 5886458 chrX 5886717 5886728 5 269 4.5 2.5 3.5 1.1 281 chrX 5886447 intron CR45668 - chrX 5886588 intron CR45668 - chrX 5886728 intron CR45668 - chrX_5_5885001 chrX_5885001 RAL-105 1286 chrX 5886462 5886476 chrX 5886713 5886740 5 265 3.0 2.5 2.8 1.3 278 chrX 5886462 intron CR45668 - chrX 5886601 intron CR45668 - chrX 5886740 intron CR45668 - chrX_5_5885001 chrX_5885001 RAL-105 1287 chrX 6003279 6003304 chrX 6003360 6003385 7 81 0.0 1.0 0.5 4.7 106 chrX 6003279 intron CR44498 + chrX 6003332 intron CR44498 + chrX 6003385 intron CR44498 + chrX_7_6000001 chrX_6000001 RAL-105 1288 chrX 6306553 6306563 chrX 6306630 6306640 4 77 1.0 1.0 1.0 2.0 87 chrX 6306553 3` UTR CG3823 + chrX 6306596 3` UTR CG3823 + chrX 6306640 3` UTR CG3823 + chrX_4_6305001 chrX_6305001 RAL-105 1289 chrX 6335215 6335244 chrX 6337721 6337751 Tirant 6 2509 1.0 0.5 0.8 3.3 2536 chrX 6335215 intergenic not near genes chrX 6336483 intergenic not near genes chrX 6337751 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-105 1290 chrX 6392875 6392901 chrX 6397640 6397666 Doc 10 4765 2.0 1.0 1.5 4.0 4791 chrX 6392875 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397666 intergenic not near genes chrX_10_6395001 chrX_6395001 RAL-105 1291 chrX 6562818 6562846 chrX 6571300 6571328 Tirant 10 8481 4.0 5.5 4.8 1.7 8510 chrX 6562818 intron CG34417 + chrX 6567073 intron CG34417 + chrX 6571328 intron CG34417 + chrX_10_6565001 chrX_6565001 RAL-105 1292 chrX 6618464 6618474 chrX 6618542 6618552 5 78 1.5 4.5 3.0 1.2 88 chrX 6618464 intron pigs + chrX 6618508 intron pigs + chrX 6618552 intron pigs + chrX_5_6615001 chrX_6615001 RAL-105 1293 chrX 6795016 6795028 chrX 6795100 6795112 9 85 0.0 2.5 1.2 4.1 96 chrX 6795016 intron C3G - chrX 6795064 intron C3G - chrX 6795112 intron C3G - chrX_9_6795001 chrX_6795001 RAL-105 1294 chrX 6892980 6892990 chrX 6893053 6893077 5 81 3.5 0.5 2.0 1.7 97 chrX 6892980 intergenic not near genes chrX 6893028 intergenic not near genes chrX 6893077 intergenic not near genes chrX_5_6890001 chrX_6890001 RAL-105 1295 chrX 7125247 7125279 chrX 7134406 7134437 roo 6 9158 1.0 1.5 1.2 2.7 9190 chrX 7125247 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134437 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-105 1296 chrX 7702922 7702932 chrX 7703347 7703366 jockey 5 435 2.0 1.0 1.5 2.0 444 chrX 7702922 intron CHES-1-like - chrX 7703144 intron CHES-1-like - chrX 7703366 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-105 1297 chrX 7784237 7784242 chrX 7784537 7784544 jockey 4 300 4.5 3.0 3.8 0.8 307 chrX 7784237 intergenic not near genes chrX 7784390 intergenic not near genes chrX 7784544 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-105 1298 chrX 7832440 7832463 chrX 7832529 7832552 5 89 0.5 1.5 1.0 2.5 112 chrX 7832440 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832552 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-105 1299 chrX 8138737 8138770 chrX 8138982 8139012 5 244 0.5 0.0 0.2 4.2 275 chrX 8138737 3` UTR Smox - chrX 8138874 3` UTR Smox - chrX 8139012 3` UTR Smox - chrX_5_8135001 chrX_8135001 RAL-105 1300 chrX 8364852 8364875 chrX 8365249 8365272 BS 5 397 0.0 1.5 0.8 2.8 420 chrX 8364852 intron nAChRalpha3 - chrX 8365062 intron nAChRalpha3 - chrX 8365272 intron nAChRalpha3 - chrX_5_8365001 chrX_8365001 RAL-105 1301 chrX 8506026 8506041 chrX 8506104 8506119 4 78 0.5 0.5 0.5 2.7 93 chrX 8506026 intron CG33181 + chrX 8506072 intron CG33181 + chrX 8506119 intron CG33181 + chrX_4_8505001 chrX_8505001 RAL-105 1302 chrX 8536766 8536776 chrX 8536842 8536852 4 76 4.0 1.0 2.5 1.1 86 chrX 8536766 intron Nrg + chrX 8536809 intron Nrg + chrX 8536852 intron Nrg + chrX_4_8535001 chrX_8535001 RAL-105 1303 chrX 8605311 8605342 chrX 8605388 8605419 6 77 1.0 1.0 1.0 3.0 108 chrX 8605311 exon Caf1-180 - chrX 8605365 exon Caf1-180 - chrX 8605419 exon Caf1-180 - chrX_6_8605001 chrX_8605001 RAL-105 1304 chrX 8726185 8726213 chrX 8726282 8726310 7 97 0.5 0.0 0.2 5.8 125 chrX 8726185 intergenic CR43297 + chrX 8726248 intergenic CR43297 + chrX 8726310 intergenic CR43297 + chrX_7_8725001 chrX_8725001 RAL-105 1305 chrX 8774285 8774315 chrX 8774370 8774400 7 85 4.0 1.5 2.8 1.8 115 chrX 8774285 intron Lim1 - chrX 8774342 intron Lim1 - chrX 8774400 intron Lim1 - chrX_7_8770001 chrX_8770001 RAL-105 1306 chrX 8837215 8837246 chrX 8837421 8837451 9 206 0.5 1.0 0.8 5.0 236 chrX 8837215 intergenic CR45537 + chrX 8837333 intergenic not near genes chrX 8837451 intergenic not near genes chrX_9_8835001 chrX_8835001 RAL-105 1307 chrX 8877779 8877809 chrX 8877903 8877931 10 124 1.5 0.0 0.8 5.6 152 chrX 8877779 intron Moe - chrX 8877855 intron Moe - chrX 8877931 intron Moe - chrX_10_8875001 chrX_8875001 RAL-105 1308 chrX 8922325 8922362 chrX 8922759 8922796 jockey 10 434 3.5 1.0 2.2 3.1 471 chrX 8922325 intron rdgA + chrX 8922560 intron rdgA + chrX 8922796 intron rdgA + chrX_10_8920001 chrX_8920001 RAL-105 1309 chrX 9129477 9129507 chrX 9129562 9129591 8 86 2.0 2.5 2.2 2.5 114 chrX 9129477 intron fend - chrX 9129534 intron fend - chrX 9129591 intron fend - chrX_8_9125001 chrX_9125001 RAL-105 1310 chrX 9254359 9254389 chrX 9254440 9254470 7 81 2.0 1.5 1.8 2.5 111 chrX 9254359 intron CG17754 + chrX 9254414 intron CG17754 + chrX 9254470 intron CG17754 + chrX_7_9250001 chrX_9250001 RAL-105 1311 chrX 9337951 9337971 chrX 9338043 9338061 7 91 2.0 2.5 2.2 2.2 110 chrX 9337951 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338061 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-105 1312 chrX 9527930 9527954 chrX 9528004 9528030 5 75 0.5 1.5 1.0 2.5 100 chrX 9527930 intron CG32700 - chrX 9527980 intron CG32700 - chrX 9528030 intron CG32700 - chrX_5_9525001 chrX_9525001 RAL-105 1313 chrX 9575793 9575823 chrX 9576117 9576147 mdg3 8 323 6.0 4.0 5.0 1.3 354 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576147 intron,5` UTR CG32699 -,CG42395 - chrX_8_9575001 chrX_9575001 RAL-105 1314 chrX 9636463 9636490 chrX 9636627 9636654 4 164 0.5 1.0 0.8 2.2 191 chrX 9636463 intron l(1)G0232 - chrX 9636558 intron l(1)G0232 - chrX 9636654 intron l(1)G0232 - chrX_4_9635001 chrX_9635001 RAL-105 1315 chrX 9668723 9668748 chrX 9668800 9668823 9 75 1.0 3.5 2.2 2.8 100 chrX 9668723 3` UTR nej - chrX 9668773 3` UTR nej - chrX 9668823 3` UTR nej - chrX_9_9665001 chrX_9665001 RAL-105 1316 chrX 9794782 9794791 chrX 9794860 9794869 4 78 1.0 4.0 2.5 1.1 87 chrX 9794782 intron CG32698 + chrX 9794826 intron CG32698 + chrX 9794869 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-105 1317 chrX 10297535 10297556 chrX 10298978 10298999 5 1443 6.0 13.0 9.5 0.5 1464 chrX 10297535 intron alpha-Man-I - chrX 10298267 intron alpha-Man-I - chrX 10298999 intron alpha-Man-I - chrX_5_10295001 chrX_10295001 RAL-105 1318 chrX 10550853 10550887 chrX 10552320 10552354 hobo 9 1467 6.5 0.5 3.5 2.0 1501 chrX 10550853 intron spri - chrX 10551604 intron spri - chrX 10552354 intron spri - chrX_9_10550001 chrX_10550001 RAL-105 1319 chrX 10666443 10666471 chrX 10666610 10666638 6 167 1.0 0.0 0.5 4.0 195 chrX 10666443 intron X11Lbeta + chrX 10666540 intron X11Lbeta + chrX 10666638 intron X11Lbeta + chrX_6_10665001 chrX_10665001 RAL-105 1320 chrX 10686056 10686067 chrX 10691193 10691204 roo 4 5137 0.0 1.5 0.8 2.2 5148 chrX 10686056 intron X11Lbeta + chrX 10688630 intron X11Lbeta + chrX 10691204 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-105 1321 chrX 11141976 11142067 chrX 11142052 11142143 6 76 0.0 0.0 0.0 6.0 167 chrX 11141976 intergenic CG15199 - chrX 11142060 intergenic CG15199 -,CG15202 + chrX 11142143 intergenic CG15199 -,CG15202 + chrX_6_11140001 chrX_11140001 RAL-105 1322 chrX 11184252 11184262 chrX 11189328 11189338 flea 4 5075 4.0 1.5 2.8 1.1 5086 chrX 11184252 intergenic not near genes chrX 11186795 intergenic not near genes chrX 11189338 intergenic not near genes chrX_4_11185001 chrX_11185001 RAL-105 1323 chrX 11268582 11268588 chrX 11270057 11270062 hopper2 4 1474 4.0 2.0 3.0 1.0 1480 chrX 11268582 intron CG44422 - chrX 11269322 intron CG44422 - chrX 11270062 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-105 1324 chrX 11689090 11689107 chrX 11689190 11689207 6 100 1.0 5.0 3.0 1.5 117 chrX 11689090 intron bif + chrX 11689148 intron bif + chrX 11689207 exon bif + chrX_6_11685001 chrX_11685001 RAL-105 1325 chrX 12069062 12069073 chrX 12069149 12069160 5 87 4.0 1.0 2.5 1.4 98 chrX 12069062 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069111 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069160 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_5_12065001 chrX_12065001 RAL-105 1326 chrX 12070526 12070552 chrX 12071752 12071778 4 1226 13.0 8.5 10.8 0.3 1252 chrX 12070526 intron,intron,exon CR43960 +,Ten-a +,CG34323 + chrX 12071152 intron,intron,3` UTR CR43960 +,Ten-a +,CG34323 + chrX 12071778 intron,intron CR43960 +,Ten-a + chrX_4_12070001 chrX_12070001 RAL-105 1327 chrX 12350775 12350803 chrX 12350856 12350884 4 79 1.5 0.0 0.8 2.2 109 chrX 12350775 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350884 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-105 1328 chrX 12532644 12532662 chrX 12532790 12532807 6 146 1.5 0.0 0.8 3.3 163 chrX 12532644 intron CG43921 - chrX 12532726 intron CG43921 - chrX 12532807 intron CG43921 - chrX_6_12530001 chrX_12530001 RAL-105 1329 chrX 12971707 12971716 chrX 12971767 12971782 4 68 3.5 3.0 3.2 1.0 75 chrX 12971707 intron,exon CR43636 -,CG15721 + chrX 12971744 intron,exon CR43636 -,CG15721 + chrX 12971782 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-105 1330 chrX 13061356 13061369 chrX 13061467 13061478 5 109 3.5 5.5 4.5 0.9 122 chrX 13061356 intron rad + chrX 13061417 intron rad + chrX 13061478 intron rad + chrX_5_13060001 chrX_13060001 RAL-105 1331 chrX 13146599 13146619 chrX 13146687 13146707 4 88 1.5 0.0 0.8 2.2 108 chrX 13146599 intron CG32645 + chrX 13146653 intron CG32645 + chrX 13146707 intron CG32645 + chrX_4_13145001 chrX_13145001 RAL-105 1332 chrX 13429475 13429493 chrX 13430624 13430642 jockey 4 1149 0.0 2.0 1.0 2.0 1167 chrX 13429475 intergenic not near genes chrX 13430058 intergenic not near genes chrX 13430642 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-105 1333 chrX 13542736 13542767 chrX 13542817 13542849 5 82 0.0 1.0 0.5 3.3 113 chrX 13542736 intergenic not near genes chrX 13542792 intergenic not near genes chrX 13542849 intergenic not near genes chrX_5_13540001 chrX_13540001 RAL-105 1334 chrX 13934287 13934323 chrX 13934371 13934406 4 83 0.5 0.5 0.5 2.7 119 chrX 13934287 intron mamo - chrX 13934346 intron mamo - chrX 13934406 intron mamo - chrX_4_13930001 chrX_13930001 RAL-105 1335 chrX 13943272 13943298 chrX 13943363 13943389 7 91 0.0 4.0 2.0 2.3 117 chrX 13943272 intron mamo - chrX 13943330 intron mamo - chrX 13943389 intron mamo - chrX_7_13940001 chrX_13940001 RAL-105 1336 chrX 14105021 14105055 chrX 14114171 14114180 roo 13 9146 3.5 2.5 3.0 3.2 9159 chrX 14105021 intergenic not near genes chrX 14109600 intergenic not near genes chrX 14114180 5` UTR CR44657 + chrX_13_14105001 chrX_14105001 RAL-105 1337 chrX 14131486 14131523 chrX 14131567 14131604 15 76 3.0 2.5 2.8 3.9 118 chrX 14131486 intergenic not near genes chrX 14131545 intergenic not near genes chrX 14131604 intergenic not near genes chrX_15_14130001 chrX_14130001 RAL-105 1338 chrX 14333823 14333839 chrX 14333921 14333935 7 96 3.0 0.0 1.5 2.8 112 chrX 14333823 intron dpr8 + chrX 14333879 intron dpr8 + chrX 14333935 intron dpr8 + chrX_7_14330001 chrX_14330001 RAL-105 1339 chrX 14341016 14341038 chrX 14341140 14341162 4 124 3.0 1.5 2.2 1.2 146 chrX 14341016 intron dpr8 + chrX 14341089 intron dpr8 + chrX 14341162 intron dpr8 + chrX_4_14340001 chrX_14340001 RAL-105 1340 chrX 14549526 14549555 chrX 14549605 14549633 7 76 5.5 0.5 3.0 1.8 107 chrX 14549526 intergenic not near genes chrX 14549580 intergenic not near genes chrX 14549633 intergenic not near genes chrX_7_14545001 chrX_14545001 RAL-105 1341 chrX 14628182 14628208 chrX 14628273 14628295 7 90 2.0 2.0 2.0 2.3 113 chrX 14628182 intron NetA - chrX 14628238 intron NetA - chrX 14628295 intron NetA - chrX_7_14625001 chrX_14625001 RAL-105 1342 chrX 15150026 15150041 chrX 15150427 15150442 4 401 1.5 1.5 1.5 1.6 416 chrX 15150026 intron CG9095 - chrX 15150234 intron CG9095 - chrX 15150442 intron CG9095 - chrX_4_15150001 chrX_15150001 RAL-105 1343 chrX 15228501 15228526 chrX 15228747 15228772 4 246 3.0 1.0 2.0 1.3 271 chrX 15228501 intergenic CG9101 - chrX 15228636 intergenic CG9101 - chrX 15228772 3` UTR CG9101 - chrX_4_15225001 chrX_15225001 RAL-105 1344 chrX 15413052 15413085 chrX 15417354 15417387 Juan 6 4301 1.5 1.5 1.5 2.4 4335 chrX 15413052 intron Cngl - chrX 15415220 intron Cngl - chrX 15417387 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-105 1345 chrX 15435693 15435704 chrX 15436122 15436137 rover 4 432 0.0 5.0 2.5 1.1 444 chrX 15435693 intron Cngl - chrX 15435915 intron Cngl - chrX 15436137 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-105 1346 chrX 15497596 15497615 chrX 15497684 15497705 6 90 1.0 0.5 0.8 3.3 109 chrX 15497596 intron,3` UTR Gmap +,CR44888 - chrX 15497650 intron,3` UTR Gmap +,CR44888 - chrX 15497705 intron,3` UTR Gmap +,CR44888 - chrX_6_15495001 chrX_15495001 RAL-105 1347 chrX 15678049 15678066 chrX 15678126 15678143 5 77 3.5 3.5 3.5 1.1 94 chrX 15678049 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678143 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-105 1348 chrX 16329437 16329448 chrX 16329520 16329529 5 83 0.0 6.5 3.2 1.2 92 chrX 16329437 intron CG9919 - chrX 16329483 intron CG9919 - chrX 16329529 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-105 1349 chrX 7978951 7978952 chrX 16525771 16525795 4 8546829 9.0 4.5 6.8 0.5 8546844 chrX 7978951 intron sn + chrX 12252373 intron Ten-a + chrX 16525795 intron para - chrX_4_12250001 chrX_12250001 RAL-105 1350 chrX 16648122 16648136 chrX 16648207 16648221 8 85 3.5 4.0 3.8 1.7 99 chrX 16648122 3` UTR mthl1 + chrX 16648172 3` UTR mthl1 + chrX 16648221 3` UTR mthl1 + chrX_8_16645001 chrX_16645001 RAL-105 1351 chrX 16689630 16689656 chrX 16689709 16689719 7 79 0.5 2.0 1.2 3.2 89 chrX 16689630 intron Sep4 - chrX 16689674 intron Sep4 - chrX 16689719 intron Sep4 - chrX_7_16685001 chrX_16685001 RAL-105 1352 chrX 16785275 16785309 chrX 16785379 16785413 5 104 0.0 0.5 0.2 4.2 138 chrX 16785275 3` UTR CG9609 - chrX 16785344 3` UTR CG9609 - chrX 16785413 3` UTR CG9609 - chrX_5_16785001 chrX_16785001 RAL-105 1353 chrX 17006363 17006386 chrX 17006751 17006775 6 389 2.0 0.0 1.0 3.0 412 chrX 17006363 intron CG45002 - chrX 17006569 intron CG45002 - chrX 17006775 intron CG45002 - chrX_6_17005001 chrX_17005001 RAL-105 1354 chrX 17011706 17011999 chrX 17011853 17012082 14 103 1.0 5.5 3.2 3.3 376 chrX 17011706 intron CG45002 - chrX 17011894 intron CG45002 - chrX 17012082 intron CG45002 - chrX_14_17010001 chrX_17010001 RAL-105 1355 chrX 17037978 17037999 chrX 17038072 17038093 4 94 0.5 0.5 0.5 2.7 115 chrX 17037978 intron CG45002 - chrX 17038036 intron CG45002 - chrX 17038093 intron CG45002 - chrX_4_17035001 chrX_17035001 RAL-105 1356 chrX 17122642 17122653 chrX 17122733 17122744 6 90 4.0 1.0 2.5 1.7 102 chrX 17122642 intron CG5004 + chrX 17122693 intron CG5004 + chrX 17122744 intron CG5004 + chrX_6_17120001 chrX_17120001 RAL-105 1357 chrX 17122657 17122661 chrX 17122731 17122752 4 87 3.5 0.5 2.0 1.3 95 chrX 17122657 intron CG5004 + chrX 17122704 intron CG5004 + chrX 17122752 intron CG5004 + chrX_4_17120001 chrX_17120001 RAL-105 1358 chrX 17234261 17234288 chrX 17234354 17234367 4 90 2.5 0.0 1.2 1.8 106 chrX 17234261 intron f + chrX 17234314 intron f + chrX 17234367 intron f + chrX_4_17230001 chrX_17230001 RAL-105 1359 chrX 17545020 17545034 chrX 17545102 17545116 4 82 1.0 2.0 1.5 1.6 96 chrX 17545020 intron CG43658 - chrX 17545068 intron CG43658 - chrX 17545116 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-105 1360 chrX 17556948 17556958 chrX 17557446 17557457 mdg1 5 498 4.0 4.0 4.0 1.0 509 chrX 17556948 intron CG43658 - chrX 17557202 intron CG43658 - chrX 17557457 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-105 1361 chrX 17792956 17792982 chrX 17796254 17796280 flea 9 3298 3.0 2.5 2.8 2.4 3324 chrX 17792956 intron OdsH + chrX 17794618 intron OdsH + chrX 17796280 intron OdsH + chrX_9_17790001 chrX_17790001 RAL-105 1362 chrX 18122817 18122849 chrX 18122893 18122925 7 75 1.0 1.0 1.0 3.5 108 chrX 18122817 5` UTR CR45606 + chrX 18122871 5` UTR CR45606 + chrX 18122925 intergenic CR45606 + chrX_7_18120001 chrX_18120001 RAL-105 1363 chrX 18194081 18194096 chrX 18194616 18194631 BS 4 535 0.0 1.5 0.8 2.2 550 chrX 18194081 intron Frq2 + chrX 18194356 intron Frq2 + chrX 18194631 intron Frq2 + chrX_4_18190001 chrX_18190001 RAL-105 1364 chrX 18558778 18558805 chrX 18558860 18558887 4 82 0.0 1.0 0.5 2.7 109 chrX 18558778 intron Bx + chrX 18558832 intron Bx + chrX 18558887 intron Bx + chrX_4_18555001 chrX_18555001 RAL-105 1365 chrX 18997699 18997719 chrX 18997889 18997910 7 190 3.0 0.5 1.8 2.5 211 chrX 18997699 intron CG43759 + chrX 18997804 intron CG43759 + chrX 18997910 intron CG43759 + chrX_7_18995001 chrX_18995001 RAL-105 1366 chrX 19020592 19020622 chrX 19020670 19020699 4 78 0.5 1.0 0.8 2.2 107 chrX 19020592 intron CG43759 + chrX 19020646 intron CG43759 + chrX 19020699 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-105 1367 chrX 19099659 19099681 chrX 19099742 19099764 4 83 3.5 2.5 3.0 1.0 105 chrX 19099659 intergenic not near genes chrX 19099712 intergenic not near genes chrX 19099764 intergenic not near genes chrX_4_19095001 chrX_19095001 RAL-105 1368 chrX 19106824 19106837 chrX 19106900 19106913 5 76 5.5 1.0 3.2 1.2 89 chrX 19106824 intergenic not near genes chrX 19106868 intergenic not near genes chrX 19106913 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-105 1369 chrX 19170596 19170599 chrX 19170671 19170676 4 76 8.0 4.5 6.2 0.6 80 chrX 19170596 5` UTR Inx5 - chrX 19170636 5` UTR Inx5 - chrX 19170676 5` UTR Inx5 - chrX_4_19170001 chrX_19170001 RAL-105 1370 chrX 19236262 19236298 chrX 19236342 19236378 7 80 0.5 2.5 1.5 2.8 116 chrX 19236262 exon CG14196 - chrX 19236320 intron CG14196 - chrX 19236378 intron CG14196 - chrX_7_19235001 chrX_19235001 RAL-105 1371 chrX 13057298 13057300 chrX 19242812 19242814 7 6185514 4.0 1.0 2.5 2.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_7_16150001 chrX_16150001 RAL-105 1372 chrX 19380157 19380182 chrX 19380398 19380423 pogo 4 241 4.0 2.5 3.2 1.0 266 chrX 19380157 intron kek5 + chrX 19380290 intron kek5 + chrX 19380423 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-105 1373 chrX 19472130 19472156 chrX 19472698 19472726 jockey 5 567 2.5 3.0 2.8 1.3 596 chrX 19472130 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472726 intergenic not near genes chrX_5_19470001 chrX_19470001 RAL-105 1374 chrX 19593946 19593977 chrX 19594031 19594062 10 84 1.0 5.0 3.0 2.5 116 chrX 19593946 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594062 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-105 1375 chrX 19710076 19710089 chrX 19711859 19711875 S-element 4 1785 2.0 2.0 2.0 1.3 1799 chrX 19710076 intron meso18E - chrX 19710976 intron meso18E - chrX 19711875 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-105 1376 chrX 19884087 19884112 chrX 19884163 19884169 4 71 0.5 1.0 0.8 2.2 82 chrX 19884087 intron Hers + chrX 19884128 intron Hers + chrX 19884169 intron Hers + chrX_4_19880001 chrX_19880001 RAL-105 1377 chrX 19992420 19992434 chrX 19992496 19992509 4 74 3.0 8.0 5.5 0.6 89 chrX 19992420 intergenic not near genes chrX 19992464 intergenic not near genes chrX 19992509 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-105 1378 chrX 20023270 20023282 chrX 20023365 20023377 5 95 6.0 3.0 4.5 0.9 107 chrX 20023270 intron Dop2R - chrX 20023324 intron Dop2R - chrX 20023377 intron Dop2R - chrX_5_20020001 chrX_20020001 RAL-105 1379 chrX 20069265 20069284 chrX 20069398 20069416 5 133 4.0 3.5 3.8 1.0 151 chrX 20069265 intergenic not near genes chrX 20069340 intergenic not near genes chrX 20069416 intergenic not near genes chrX_5_20065001 chrX_20065001 RAL-105 1380 chrX 20312889 20312902 chrX 20312966 20312980 4 78 2.0 1.0 1.5 1.6 91 chrX 20312889 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312980 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-105 1381 chrX 20369323 20369342 chrX 20369406 20369426 6 84 1.5 2.0 1.8 2.1 103 chrX 20369323 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369426 intergenic not near genes chrX_6_20365001 chrX_20365001 RAL-105 1382 chrX 20374115 20374125 chrX 20374191 20374201 5 76 2.0 4.0 3.0 1.2 86 chrX 20374115 intergenic not near genes chrX 20374158 intergenic not near genes chrX 20374201 intergenic not near genes chrX_5_20370001 chrX_20370001 RAL-105 1383 chrX 20377325 20377340 chrX 20378792 20378807 hobo 5 1466 1.0 6.0 3.5 1.1 1482 chrX 20377325 intergenic not near genes chrX 20378066 intergenic not near genes chrX 20378807 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-105 1384 chrX 20426180 20426208 chrX 20428379 20428403 10 2198 27.5 22.0 24.8 0.4 2223 chrX 20426180 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428403 exon CG11710 - chrX_10_20425001 chrX_20425001 RAL-105 1385 chrX 20504140 20504158 chrX 20505643 20505674 transib2 4 1514 3.0 1.5 2.2 1.2 1534 chrX 20504140 intron RhoGAP19D - chrX 20504907 intron RhoGAP19D - chrX 20505674 intron RhoGAP19D - chrX_4_20500001 chrX_20500001 RAL-105 1386 chrX 20632094 20632106 chrX 20632268 20632280 4 174 1.0 2.5 1.8 1.4 186 chrX 20632094 intergenic not near genes chrX 20632187 intergenic not near genes chrX 20632280 intergenic not near genes chrX_4_20630001 chrX_20630001 RAL-105 1387 chrX 20981032 20981052 chrX 20981135 20981155 5 103 1.0 1.0 1.0 2.5 123 chrX 20981032 intergenic not near genes chrX 20981094 intergenic not near genes chrX 20981155 intergenic not near genes chrX_5_20980001 chrX_20980001 RAL-105 1388 chrX 21086137 21086143 chrX 21087166 21087171 jockey 4 1029 3.0 2.0 2.5 1.1 1034 chrX 21086137 intergenic not near genes chrX 21086654 intergenic not near genes chrX 21087171 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-105 1389 chrX 21088047 21088072 chrX 21088179 21088204 5 131 0.5 0.5 0.5 3.3 157 chrX 21088047 intergenic not near genes chrX 21088126 intergenic not near genes chrX 21088204 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-105 1390 chrX 21253285 21253306 chrX 21253362 21253382 5 75 3.5 4.0 3.8 1.0 97 chrX 21253285 intron CG32521 - chrX 21253334 intron CG32521 - chrX 21253382 intron CG32521 - chrX_5_21250001 chrX_21250001 RAL-105 1391 chrX 21254701 21254736 chrX 21255287 21255322 hopper2 14 585 3.0 3.5 3.2 3.3 621 chrX 21254701 intron CG32521 - chrX 21255012 intron CG32521 - chrX 21255322 intron CG32521 - chrX_14_21255001 chrX_21255001 RAL-105 1392 chrX 21258841 21258849 chrX 21258941 21258949 4 100 2.0 2.0 2.0 1.3 108 chrX 21258841 intron CG32521 - chrX 21258895 intron CG32521 - chrX 21258949 intron CG32521 - chrX_4_21255001 chrX_21255001 RAL-105 1393 chrX 21458689 21458723 chrX 21464125 21464155 Ivk 5 5435 1.0 1.0 1.0 2.5 5466 chrX 21458689 intergenic not near genes chrX 21461422 intergenic not near genes chrX 21464155 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-105 1394 chrX 21516992 21517018 chrX 21517070 21517096 5 78 2.5 4.5 3.5 1.1 104 chrX 21516992 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517096 intron CR45082 - chrX_5_21515001 chrX_21515001 RAL-105 1395 chrX 21565427 21565444 chrX 21565505 21565522 8 78 1.5 2.0 1.8 2.9 95 chrX 21565427 intergenic not near genes chrX 21565474 intergenic not near genes chrX 21565522 intergenic not near genes chrX_8_21565001 chrX_21565001 RAL-105 1396 chrX 22522639 22522660 chrX 22525459 22525480 NOF 4 2820 1.0 0.0 0.5 2.7 2841 chrX 22522639 intron CG17600 + chrX 22524060 intron CG17600 + chrX 22525480 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-105 1397 chrX 22870883 22870901 chrX 22870974 22870992 7 89 2.0 5.5 3.8 1.5 109 chrX 22870883 intron,3` UTR CG42346 +,CR43656 - chrX 22870938 intron,3` UTR CG42346 +,CR43656 - chrX 22870992 intron,3` UTR CG42346 +,CR43656 - chrX_7_22870001 chrX_22870001 RAL-105 1398 chrX 22992401 22992416 chrX 22992532 22992545 4 130 1.5 3.0 2.2 1.2 144 chrX 22992401 intron,intron stnA -,stnB - chrX 22992473 intron,intron stnA -,stnB - chrX 22992545 intron,intron stnA -,stnB - chrX_4_22990001 chrX_22990001 RAL-105 1399 chrY 975598 975818 chrY 975715 975898 11 148 111.5 117.0 114.2 0.1 300 chrY 975598 intergenic not near genes chrY 975748 intergenic not near genes chrY 975898 intergenic not near genes chrY_11_975001 chrY_975001 RAL-105 1400 chrY 2761741 2761753 chrY 2761829 2761840 5 88 0.5 2.5 1.5 2.0 99 chrY 2761741 intergenic not near genes chrY 2761790 intergenic not near genes chrY 2761840 intergenic not near genes chrY_5_2760001 chrY_2760001 RAL-105