SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47458	47485	chr2L	52563	52589	jockey	11	5105	4.0	3.5	3.8	2.3	5131	chr2L	47458	intron	Cda5 -	chr2L	50024	intron	Cda5 -	chr2L	52589	intron	Cda5 -	chr2L_11_50001	chr2L_50001	RAL-101
11	chr2L	347904	347914	chr2L	355404	355414	blood	4	7500	0.5	2.5	1.5	1.6	7510	chr2L	347904	3` UTR	Plc21C +	chr2L	351659	intron	Plc21C +	chr2L	355414	3` UTR	Plc21C +	chr2L_4_350001	chr2L_350001	RAL-101
18	chr2L	770466	770492	chr2L	772246	772273	Bari1	4	1780	4.0	1.5	2.8	1.1	1807	chr2L	770466	intergenic	not near genes	chr2L	771370	intergenic	not near genes	chr2L	772273	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	RAL-101
22	chr2L	976877	976902	chr2L	984513	984515	roo	5	7631	1.0	1.0	1.0	2.5	7638	chr2L	976877	intergenic	not near genes	chr2L	980696	intergenic	not near genes	chr2L	984515	intergenic	not near genes	chr2L_5_980001	chr2L_980001	RAL-101
26	chr2L	1220130	1220161	chr2L	1227594	1227627	blood	9	7465	2.5	3.0	2.8	2.4	7497	chr2L	1220130	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_9_1220001	chr2L_1220001	RAL-101
32	chr2L	1570701	1570713	chr2L	1573571	1573585	F-element	4	2871	5.0	4.5	4.8	0.7	2884	chr2L	1570701	intron	haf +	chr2L	1572143	intron	haf +	chr2L	1573585	intron	haf +	chr2L_4_1570001	chr2L_1570001	RAL-101
34	chr2L	1711355	1711389	chr2L	1711679	1711700	mdg3	8	320	2.5	5.0	3.8	1.7	345	chr2L	1711355	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711528	3` UTR	frtz -	chr2L	1711700	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-101
36	chr2L	2100383	2100406	chr2L	2109534	2109549	roo	8	9149	2.0	5.5	3.8	1.7	9166	chr2L	2100383	intron	dpr3 -	chr2L	2104966	intron	dpr3 -	chr2L	2109549	intron	dpr3 -	chr2L_8_2100001	chr2L_2100001	RAL-101
37	chr2L	2112113	2112145	chr2L	2119775	2119802	opus	4	7656	1.5	4.0	2.8	1.1	7689	chr2L	2112113	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119802	intergenic	not near genes	chr2L_4_2115001	chr2L_2115001	RAL-101
44	chr2L	2565550	2565562	chr2L	2571618	2571630	297	5	6068	3.0	3.5	3.2	1.2	6080	chr2L	2565550	exon	Cyp309a2 -	chr2L	2568590	intron	Cyp309a2 -	chr2L	2571630	intron	Cyp309a2 -	chr2L_5_2565001	chr2L_2565001	RAL-101
48	chr2L	2933292	2933319	chr2L	2935479	2935506	pogo	7	2184	6.0	5.5	5.8	1.0	2214	chr2L	2933292	intron	lilli +	chr2L	2934399	intron	lilli +	chr2L	2935506	intron	lilli +	chr2L_7_2930001	chr2L_2930001	RAL-101
62	chr2L	4066046	4066062	chr2L	4068871	4068887	Juan	5	2825	2.5	3.5	3.0	1.2	2841	chr2L	4066046	intron	ed +	chr2L	4067466	intron	ed +	chr2L	4068887	intron	ed +	chr2L_5_4065001	chr2L_4065001	RAL-101
68	chr2L	4601702	4601735	chr2L	4609143	4609176	mdg1	7	7441	3.0	4.0	3.5	1.6	7474	chr2L	4601702	intron	dp -	chr2L	4605439	intron	dp -	chr2L	4609176	intron	dp -	chr2L_7_4605001	chr2L_4605001	RAL-101
75	chr2L	4953515	4953543	chr2L	4953756	4953784	pogo	8	241	3.5	1.0	2.2	2.5	269	chr2L	4953515	intergenic	Jon25Bii -	chr2L	4953650	intergenic	not near genes	chr2L	4953784	intergenic	Jon25Bi -	chr2L_8_4950001	chr2L_4950001	RAL-101
81	chr2L	5827710	5827740	chr2L	5836718	5836746	roo	12	9008	2.5	4.5	3.5	2.7	9036	chr2L	5827710	intron	TrissinR +	chr2L	5832228	intron	TrissinR +	chr2L	5836746	intron	TrissinR +	chr2L_12_5830001	chr2L_5830001	RAL-101
92	chr2L	6426856	6426888	chr2L	6445116	6445146	roo	7	18260	1.5	4.5	3.0	1.8	18290	chr2L	6426856	3` UTR	CG9527 -	chr2L	6436001	intron	CG9527 -	chr2L	6445146	exon	CG9527 -	chr2L_7_6435001	chr2L_6435001	RAL-101
96	chr2L	6876775	6876806	chr2L	6882965	6882997	diver	4	6189	3.0	3.5	3.2	1.0	6222	chr2L	6876775	intron	Nlg2 +	chr2L	6879886	intron	Nlg2 +	chr2L	6882997	intron	Nlg2 +	chr2L_4_6875001	chr2L_6875001	RAL-101
99	chr2L	7343326	7343355	chr2L	7350441	7350471	roo	5	7114	3.0	2.0	2.5	1.4	7145	chr2L	7343326	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350471	intron	Wnt6 +	chr2L_5_7345001	chr2L_7345001	RAL-101
103	chr2L	7959041	7959053	chr2L	7960451	7960464	pogo	5	1411	8.0	2.5	5.2	0.8	1423	chr2L	7959041	intron	Snoo -	chr2L	7959752	intron	Snoo -	chr2L	7960464	intron	Snoo -	chr2L_5_7955001	chr2L_7955001	RAL-101
104	chr2L	7977092	7977108	chr2L	7984067	7984084	297	6	6972	3.0	1.0	2.0	2.0	6992	chr2L	7977092	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984084	intron,5` UTR	Snoo -,CG7231 +	chr2L_6_7980001	chr2L_7980001	RAL-101
112	chr2L	8723113	8723133	chr2L	8731490	8731508	Tirant	6	8377	1.5	1.0	1.2	2.7	8395	chr2L	8723113	intron	raw -	chr2L	8727310	intron	raw -	chr2L	8731508	intron	raw -	chr2L_6_8725001	chr2L_8725001	RAL-101
114	chr2L	9000282	9000302	chr2L	9007792	9007812	roo	10	7509	3.0	0.5	1.8	3.6	7530	chr2L	9000282	intergenic	Try29F +	chr2L	9004047	intergenic	not near genes	chr2L	9007812	intergenic	not near genes	chr2L_10_9000001	chr2L_9000001	RAL-101
119	chr2L	9393501	9393528	chr2L	9396468	9396495	jockey	6	2966	2.0	2.0	2.0	2.0	2994	chr2L	9393501	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396495	intron	Shawl -	chr2L_6_9390001	chr2L_9390001	RAL-101
125	chr2L	9973726	9973756	chr2L	9980845	9980875	HMS-Beagle	12	7117	3.0	6.5	4.8	2.1	7149	chr2L	9973726	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980875	intergenic	not near genes	chr2L_12_9975001	chr2L_9975001	RAL-101
129	chr2L	10156324	10156355	chr2L	10163792	10163823	blood	6	7469	4.0	3.0	3.5	1.3	7499	chr2L	10156324	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160074	intron	CG44153 -	chr2L	10163823	intron	CG44153 -	chr2L_6_10160001	chr2L_10160001	RAL-101
131	chr2L	10592847	10592869	chr2L	10600509	10600531	opus	5	7661	0.5	1.5	1.0	2.5	7684	chr2L	10592847	intron	Trim9 +	chr2L	10596689	intron	Trim9 +	chr2L	10600531	intron	Trim9 +	chr2L_5_10595001	chr2L_10595001	RAL-101
136	chr2L	10862851	10862868	chr2L	10864461	10864482	Rt1c	8	1611	5.0	4.0	4.5	1.5	1631	chr2L	10862851	3` UTR	CR43807 -	chr2L	10863666	intron	CR43807 -	chr2L	10864482	3` UTR	CR43807 -	chr2L_8_10860001	chr2L_10860001	RAL-101
137	chr2L	10946959	10946977	chr2L	10956173	10956192	roo	13	9214	3.0	4.0	3.5	2.9	9233	chr2L	10946959	intron	dpr2 -	chr2L	10951576	intron	dpr2 -	chr2L	10956192	intron	dpr2 -	chr2L_13_10950001	chr2L_10950001	RAL-101
142	chr2L	11614077	11614085	chr2L	11615552	11615557	hopper2	5	1483	3.0	2.5	2.8	1.3	1480	chr2L	11614077	intron	kek2 +	chr2L	11614817	intron	kek2 +	chr2L	11615557	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-101
143	chr2L	11713511	11713540	chr2L	11720975	11721008	blood	9	7467	2.0	3.0	2.5	2.6	7497	chr2L	11713511	intergenic	not near genes	chr2L	11717260	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_9_11715001	chr2L_11715001	RAL-101
154	chr2L	12558323	12558342	chr2L	12565452	12565470	HMS-Beagle	5	7128	0.0	1.0	0.5	3.3	7147	chr2L	12558323	intergenic	not near genes	chr2L	12561896	intergenic	not near genes	chr2L	12565470	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	RAL-101
157	chr2L	12861697	12861729	chr2L	12863164	12863181	hobo	6	1461	3.5	1.5	2.5	1.7	1484	chr2L	12861697	intergenic	not near genes	chr2L	12862439	intergenic	not near genes	chr2L	12863181	intergenic	not near genes	chr2L_6_12860001	chr2L_12860001	RAL-101
158	chr2L	12894022	12894039	chr2L	12895486	12895493	hobo	5	1464	6.0	2.5	4.2	1.0	1471	chr2L	12894022	intergenic	not near genes	chr2L	12894758	intergenic	not near genes	chr2L	12895493	intergenic	not near genes	chr2L_5_12890001	chr2L_12890001	RAL-101
159	chr2L	12933854	12933875	chr2L	12941319	12941342	blood	8	7466	3.5	4.0	3.8	1.7	7488	chr2L	12933854	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941342	intergenic	not near genes	chr2L_8_12935001	chr2L_12935001	RAL-101
163	chr2L	13405648	13405676	chr2L	13410445	13410473	Doc	9	4796	2.5	1.0	1.8	3.2	4825	chr2L	13405648	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410473	intron	CG7110 +	chr2L_9_13405001	chr2L_13405001	RAL-101
164	chr2L	13481447	13481475	chr2L	13482054	13482079	jockey	8	606	2.5	2.0	2.2	2.5	632	chr2L	13481447	intron	CG42784 +	chr2L	13481763	intron	CG42784 +	chr2L	13482079	intron	CG42784 +	chr2L_8_13480001	chr2L_13480001	RAL-101
168	chr2L	13761806	13761824	chr2L	13762916	13762935	Doc	4	1110	4.5	1.0	2.8	1.1	1129	chr2L	13761806	intron	TM9SF4 +	chr2L	13762370	intron	TM9SF4 +	chr2L	13762935	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-101
169	chr2L	13853084	13853113	chr2L	13862234	13862263	roo	9	9150	0.0	2.0	1.0	4.5	9179	chr2L	13853084	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862263	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	RAL-101
176	chr2L	14803884	14803913	chr2L	14809087	14809116	copia	8	5202	1.5	3.0	2.2	2.5	5232	chr2L	14803884	intergenic	not near genes	chr2L	14806500	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_8_14805001	chr2L_14805001	RAL-101
180	chr2L	14889962	14889988	chr2L	14890387	14890413	jockey	6	425	1.5	4.5	3.0	1.5	451	chr2L	14889962	intergenic	not near genes	chr2L	14890188	intergenic	not near genes	chr2L	14890413	intergenic	not near genes	chr2L_6_14890001	chr2L_14890001	RAL-101
186	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	12.5	14.0	13.2	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-101
187	chr2L	16141173	16141194	chr2L	16146380	16146401	copia	6	5207	1.5	1.5	1.5	2.4	5228	chr2L	16141173	intergenic	not near genes	chr2L	16143787	intergenic	not near genes	chr2L	16146401	intergenic	not near genes	chr2L_6_16140001	chr2L_16140001	RAL-101
189	chr2L	16280253	16280288	chr2L	16281420	16281451	1360	8	1165	1.5	2.5	2.0	2.7	1198	chr2L	16280253	intron	crp -	chr2L	16280852	intron	crp -	chr2L	16281451	intron	crp -	chr2L_8_16280001	chr2L_16280001	RAL-101
193	chr2L	17167563	17167585	chr2L	17167804	17167826	pogo	5	237	1.0	0.5	0.8	2.8	263	chr2L	17167563	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167694	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167826	intron,intron	CG34106 +,beat-IIIa +	chr2L_5_17165001	chr2L_17165001	RAL-101
195	chr2L	17273193	17273221	chr2L	17277976	17277988	F-element	5	4779	5.0	2.0	3.5	1.1	4795	chr2L	17273193	intergenic	not near genes	chr2L	17275590	intergenic	not near genes	chr2L	17277988	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	RAL-101
196	chr2L	17335558	17335580	chr2L	17336723	17336746	1360	4	1166	0.0	2.0	1.0	2.0	1188	chr2L	17335558	intergenic	not near genes	chr2L	17336152	intergenic	not near genes	chr2L	17336746	intergenic	not near genes	chr2L_4_17335001	chr2L_17335001	RAL-101
199	chr2L	17819921	17819955	chr2L	17825123	17825157	copia	4	5202	0.5	2.0	1.2	1.8	5236	chr2L	17819921	intron	CadN2 -	chr2L	17822539	intron	CadN2 -	chr2L	17825157	intron	CadN2 -	chr2L_4_17820001	chr2L_17820001	RAL-101
201	chr2L	17951948	17951974	chr2L	17953414	17953441	hobo	4	1466	0.5	3.5	2.0	1.3	1493	chr2L	17951948	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953441	intergenic	not near genes	chr2L_4_17950001	chr2L_17950001	RAL-101
202	chr2L	18051876	18051906	chr2L	18061022	18061053	roo	11	9146	2.5	3.0	2.8	2.9	9177	chr2L	18051876	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061053	intron	rdo +	chr2L_11_18055001	chr2L_18055001	RAL-101
204	chr2L	18408023	18408049	chr2L	18412807	18412833	Doc	4	4784	3.5	0.0	1.8	1.4	4810	chr2L	18408023	intergenic	not near genes	chr2L	18410428	intergenic	not near genes	chr2L	18412833	intergenic	not near genes	chr2L_4_18410001	chr2L_18410001	RAL-101
207	chr2L	19147368	19147399	chr2L	19154403	19154434	297	5	7035	1.0	1.0	1.0	2.5	7066	chr2L	19147368	intron	brat +	chr2L	19150901	intron	brat +	chr2L	19154434	intron	brat +	chr2L_5_19150001	chr2L_19150001	RAL-101
209	chr2L	19345036	19345050	chr2L	19357245	19357259	blood	5	12208	3.0	3.5	3.2	1.2	12223	chr2L	19345036	intron	dnt -	chr2L	19351148	intron	dnt -	chr2L	19357259	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-101
215	chr2L	19620093	19620130	chr2L	19621082	19621101	jockey	9	984	6.0	4.0	5.0	1.5	1008	chr2L	19620093	intron	Lar +	chr2L	19620597	intron	Lar +	chr2L	19621101	intron	Lar +	chr2L_9_19620001	chr2L_19620001	RAL-101
217	chr2L	19703541	19703559	chr2L	19712677	19712694	roo	9	9135	4.5	3.0	3.8	1.9	9153	chr2L	19703541	intron	Lar +	chr2L	19708118	intron	Lar +	chr2L	19712694	intron	Lar +	chr2L_9_19705001	chr2L_19705001	RAL-101
218	chr2L	19737355	19737388	chr2L	19740823	19740857	1360	13	3467	1.5	3.5	2.5	3.7	3502	chr2L	19737355	intergenic	Nf-YB +	chr2L	19739106	intergenic	not near genes	chr2L	19740857	intergenic	not near genes	chr2L_13_19735001	chr2L_19735001	RAL-101
228	chr2L	20568669	20568684	chr2L	20569058	20569074	X-element	6	389	1.5	3.5	2.5	1.7	405	chr2L	20568669	intron	CR45347 +	chr2L	20568872	intron	CR45347 +	chr2L	20569074	intron	CR45347 +	chr2L_6_20565001	chr2L_20565001	RAL-101
229	chr2L	20576221	20576248	chr2L	20583689	20583716	blood	7	7465	3.0	3.0	3.0	1.8	7495	chr2L	20576221	intergenic	not near genes	chr2L	20579968	intergenic	not near genes	chr2L	20583716	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-101
230	chr2L	20901471	20901487	chr2L	20902634	20902648	1360	4	1163	1.5	3.0	2.2	1.2	1177	chr2L	20901471	intron,intron	CG43739 -,sky -	chr2L	20902060	intron,intron	CG43739 -,sky -	chr2L	20902648	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-101
231	chr2L	20976641	20976675	chr2L	20981456	20981490	X-element	7	4815	2.0	1.0	1.5	2.8	4849	chr2L	20976641	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981490	intron	CG42238 -	chr2L_7_20975001	chr2L_20975001	RAL-101
232	chr2L	21020272	21020305	chr2L	21023948	21023982	NOF	7	3677	1.5	2.0	1.8	2.5	3710	chr2L	21020272	intron	CG42238 -	chr2L	21022127	intron	CG42238 -	chr2L	21023982	intron	CG42238 -	chr2L_7_21020001	chr2L_21020001	RAL-101
233	chr2L	21041145	21041165	chr2L	21049406	21049420	Tirant	4	8259	1.0	5.0	3.0	1.0	8275	chr2L	21041145	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049420	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-101
238	chr2L	21981682	21981715	chr2L	21990847	21990880	roo	6	9162	3.0	3.0	3.0	1.5	9198	chr2L	21981682	exon	CG2528 -	chr2L	21986281	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_6_21985001	chr2L_21985001	RAL-101
241	chr2R	529325	529356	chr2R	537950	537980	Max-element	6	8624	2.0	0.5	1.2	2.7	8655	chr2R	529325	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537980	intron	CG40378 +	chr2R_6_530001	chr2R_530001	RAL-101
242	chr2R	1082366	1082384	chr2R	1087142	1087160	Doc	4	4776	0.5	3.0	1.8	1.4	4794	chr2R	1082366	intron	rl +	chr2R	1084763	intron	rl +	chr2R	1087160	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-101
244	chr2R	2498990	2499017	chr2R	2508137	2508164	roo	4	9145	3.0	4.0	3.5	0.9	9174	chr2R	2498990	intron	MFS17 -	chr2R	2503577	intron	MFS17 -	chr2R	2508164	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	RAL-101
247	chr2R	4624644	4624670	chr2R	4626549	4626575	Bica	4	1905	7.5	15.5	11.5	0.3	1931	chr2R	4624644	intergenic	not near genes	chr2R	4625610	intergenic	not near genes	chr2R	4626575	intergenic	not near genes	chr2R_4_4625001	chr2R_4625001	RAL-101
256	chr2R	5869276	5869302	chr2R	5874352	5874378	flea	12	5076	2.0	2.5	2.2	3.8	5102	chr2R	5869276	intergenic	not near genes	chr2R	5871827	intergenic	not near genes	chr2R	5874378	intergenic	not near genes	chr2R_12_5870001	chr2R_5870001	RAL-101
258	chr2R	6096725	6096751	chr2R	6101912	6101949	BS	6	5192	2.5	2.0	2.2	1.9	5224	chr2R	6096725	intron	EcR -	chr2R	6099337	intron	EcR -	chr2R	6101949	intron	EcR -	chr2R_6_6095001	chr2R_6095001	RAL-101
260	chr2R	6494524	6494544	chr2R	6499286	6499306	F-element	6	4762	1.5	1.5	1.5	2.4	4782	chr2R	6494524	intergenic	not near genes	chr2R	6496915	intergenic	not near genes	chr2R	6499306	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-101
268	chr2R	7196565	7196583	chr2R	7201340	7201358	F-element	4	4775	1.0	0.5	0.8	2.2	4793	chr2R	7196565	intron	pk +	chr2R	7198962	intron	pk +	chr2R	7201358	intron	pk +	chr2R_4_7195001	chr2R_7195001	RAL-101
269	chr2R	7235825	7235849	chr2R	7240916	7240941	jockey	5	5092	3.5	3.5	3.5	1.1	5116	chr2R	7235825	intergenic	not near genes	chr2R	7238383	intergenic	not near genes	chr2R	7240941	intergenic	not near genes	chr2R_5_7235001	chr2R_7235001	RAL-101
280	chr2R	7815684	7815700	chr2R	7822153	7822169	Burdock	5	6469	1.5	4.0	2.8	1.3	6485	chr2R	7815684	intergenic	CG1882 +	chr2R	7818926	intergenic	not near genes	chr2R	7822169	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	RAL-101
282	chr2R	7869195	7869214	chr2R	7873981	7873999	Doc	4	4785	4.0	3.5	3.8	0.8	4804	chr2R	7869195	intron	Dgk -	chr2R	7871597	intron	Dgk -	chr2R	7873999	intron	Dgk -	chr2R_4_7870001	chr2R_7870001	RAL-101
288	chr2R	8160936	8160944	chr2R	8161026	8161034	1360	4	90	8.0	8.5	8.2	0.4	98	chr2R	8160936	intron	CG8708 -	chr2R	8160985	intron	CG8708 -	chr2R	8161034	intron	CG8708 -	chr2R_4_8160001	chr2R_8160001	RAL-101
289	chr2R	8330865	8330891	chr2R	8331350	8331377	roo	6	486	2.5	2.0	2.2	1.9	512	chr2R	8330865	intron	pdm3 +	chr2R	8331121	intron	pdm3 +	chr2R	8331377	intron	pdm3 +	chr2R_6_8330001	chr2R_8330001	RAL-101
295	chr2R	8566032	8566064	chr2R	8566983	8567010	1360	5	948	2.0	0.5	1.2	2.3	978	chr2R	8566032	5` UTR	Cyp6a14 -	chr2R	8566521	5` UTR	Cyp6a14 -	chr2R	8567010	5` UTR	Cyp6a14 -	chr2R_5_8565001	chr2R_8565001	RAL-101
298	chr2R	9212692	9212722	chr2R	9213178	9213208	roo	6	484	3.0	4.5	3.8	1.2	516	chr2R	9212692	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213208	5` UTR	CR45309 +	chr2R_6_9210001	chr2R_9210001	RAL-101
303	chr2R	9945441	9945465	chr2R	9945637	9945661	BS	5	196	3.5	2.5	3.0	1.2	220	chr2R	9945441	intron	Mef2 -	chr2R	9945551	intron	Mef2 -	chr2R	9945661	intron	Mef2 -	chr2R_5_9945001	chr2R_9945001	RAL-101
305	chr2R	10005847	10005881	chr2R	10007012	10007037	1360	17	1163	1.0	3.5	2.2	5.3	1190	chr2R	10005847	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007037	intron	Pka-R2 -	chr2R_17_10005001	chr2R_10005001	RAL-101
314	chr2R	10585575	10585591	chr2R	10594157	10594174	Tirant	4	8582	0.5	2.0	1.2	1.8	8599	chr2R	10585575	intron	psq +	chr2R	10589874	intron	psq +	chr2R	10594174	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-101
320	chr2R	10948024	10948061	chr2R	10955575	10955612	17.6	9	7548	0.5	3.5	2.0	3.0	7588	chr2R	10948024	intergenic	not near genes	chr2R	10951818	intergenic	not near genes	chr2R	10955612	intergenic	not near genes	chr2R_9_10950001	chr2R_10950001	RAL-101
321	chr2R	11009817	11009845	chr2R	11018991	11019015	roo	5	9173	2.0	3.5	2.8	1.3	9198	chr2R	11009817	intron	luna -	chr2R	11014416	intron	luna -	chr2R	11019015	intron	luna -	chr2R_5_11010001	chr2R_11010001	RAL-101
322	chr2R	11019884	11019906	chr2R	11024942	11024969	jockey	7	5061	1.5	2.0	1.8	2.5	5085	chr2R	11019884	intron	luna -	chr2R	11022426	intron	luna -	chr2R	11024969	intron	luna -	chr2R_7_11020001	chr2R_11020001	RAL-101
326	chr2R	11207818	11207842	chr2R	11208010	11208034	BS	5	191	4.0	1.5	2.8	1.3	216	chr2R	11207818	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208034	intron	shn +	chr2R_5_11205001	chr2R_11205001	RAL-101
327	chr2R	11297631	11297650	chr2R	11301949	11301969	flea	7	4320	3.0	3.5	3.2	1.7	4338	chr2R	11297631	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11301969	5` UTR	CG7741 +	chr2R_7_11295001	chr2R_11295001	RAL-101
329	chr2R	11415532	11415550	chr2R	11418680	11418699	opus	6	3148	1.0	3.5	2.2	1.9	3167	chr2R	11415532	intron	Drip -	chr2R	11417116	intron	Drip -	chr2R	11418699	intron	Drip -	chr2R_6_11415001	chr2R_11415001	RAL-101
331	chr2R	11472647	11472674	chr2R	11473844	11473871	pogo	9	1196	6.0	2.5	4.2	1.7	1224	chr2R	11472647	intergenic	not near genes	chr2R	11473259	intergenic	not near genes	chr2R	11473871	intergenic	not near genes	chr2R_9_11470001	chr2R_11470001	RAL-101
339	chr2R	12481145	12481166	chr2R	12482938	12482950	roo	5	1792	1.5	1.5	1.5	2.0	1805	chr2R	12481145	exon	Dh44-R2 +	chr2R	12482048	intron	Dh44-R2 +	chr2R	12482950	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	RAL-101
340	chr2R	12501689	12501721	chr2R	12503851	12503869	Rt1c	6	2159	2.0	3.0	2.5	1.7	2180	chr2R	12501689	intron	fdl -	chr2R	12502779	intron	fdl -	chr2R	12503869	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-101
341	chr2R	12819450	12819471	chr2R	12824526	12824548	jockey	7	5075	2.5	3.0	2.8	1.8	5098	chr2R	12819450	intergenic	not near genes	chr2R	12821999	intergenic	not near genes	chr2R	12824548	intergenic	not near genes	chr2R_7_12820001	chr2R_12820001	RAL-101
343	chr2R	13136837	13136863	chr2R	13141635	13141661	Doc	6	4798	4.0	3.5	3.8	1.2	4824	chr2R	13136837	exon	Cap-G +	chr2R	13139249	intron	Cap-G +	chr2R	13141661	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RAL-101
357	chr2R	13905600	13905633	chr2R	13907582	13907615	Rt1a	8	1981	3.0	5.0	4.0	1.6	2015	chr2R	13905600	intron	shot -	chr2R	13906608	intron	shot -	chr2R	13907615	intron	shot -	chr2R_8_13905001	chr2R_13905001	RAL-101
360	chr2R	14467313	14467324	chr2R	14476471	14476482	roo	5	9158	2.5	1.0	1.8	1.8	9169	chr2R	14467313	intergenic	not near genes	chr2R	14471898	intergenic	not near genes	chr2R	14476482	5` UTR	CR44462 +	chr2R_5_14470001	chr2R_14470001	RAL-101
363	chr2R	15015468	15015482	chr2R	15022892	15022906	mdg1	6	7424	4.0	2.5	3.2	1.4	7438	chr2R	15015468	intron	hbs +	chr2R	15019187	intron	hbs +	chr2R	15022906	intron	hbs +	chr2R_6_15015001	chr2R_15015001	RAL-101
367	chr2R	15084979	15085007	chr2R	15092028	15092056	297	9	7049	4.0	3.5	3.8	1.9	7077	chr2R	15084979	intergenic	not near genes	chr2R	15088518	intergenic	not near genes	chr2R	15092056	5` UTR	CR44457 +	chr2R_9_15085001	chr2R_15085001	RAL-101
368	chr2R	15119319	15119351	chr2R	15127797	15127832	Tirant	6	8478	5.0	1.0	3.0	1.5	8513	chr2R	15119319	intron	chn +	chr2R	15123576	intron	chn +	chr2R	15127832	intron	chn +	chr2R_6_15120001	chr2R_15120001	RAL-101
383	chr2R	17147244	17147258	chr2R	17152275	17152289	jockey	4	5031	4.0	6.0	5.0	0.7	5045	chr2R	17147244	intergenic	not near genes	chr2R	17149766	intergenic	not near genes	chr2R	17152289	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-101
384	chr2R	17236508	17236538	chr2R	17241712	17241742	copia	8	5204	3.0	3.5	3.2	1.9	5234	chr2R	17236508	intron	mbl +	chr2R	17239125	intron	mbl +	chr2R	17241742	intron	mbl +	chr2R_8_17235001	chr2R_17235001	RAL-101
387	chr2R	17485912	17485933	chr2R	17490674	17490695	F-element	5	4762	1.0	0.5	0.8	2.8	4783	chr2R	17485912	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488304	intron	NT5E-2 +	chr2R	17490695	intron	NT5E-2 +	chr2R_5_17485001	chr2R_17485001	RAL-101
402	chr2R	18358402	18358414	chr2R	18372613	18372626	roo	5	14212	2.5	5.0	3.8	1.0	14224	chr2R	18358402	intergenic	not near genes	chr2R	18365514	intergenic	not near genes	chr2R	18372626	intergenic	not near genes	chr2R_5_18365001	chr2R_18365001	RAL-101
410	chr2R	18575813	18575821	chr2R	18582001	18582003	3S18	5	6186	1.5	5.0	3.2	1.2	6190	chr2R	18575813	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582003	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-101
411	chr2R	18590866	18590901	chr2R	18600018	18600053	roo	7	9151	4.5	4.5	4.5	1.3	9187	chr2R	18590866	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_7_18595001	chr2R_18595001	RAL-101
421	chr2R	19776598	19776621	chr2R	19779915	19779944	jockey	7	3321	2.0	1.0	1.5	2.8	3346	chr2R	19776598	intergenic	not near genes	chr2R	19778271	intergenic	not near genes	chr2R	19779944	intergenic	not near genes	chr2R_7_19775001	chr2R_19775001	RAL-101
423	chr2R	19914843	19914858	chr2R	19922255	19922270	mdg1	4	7412	2.5	1.5	2.0	1.3	7427	chr2R	19914843	intergenic	not near genes	chr2R	19918556	intergenic	not near genes	chr2R	19922270	intergenic	not near genes	chr2R_4_19915001	chr2R_19915001	RAL-101
424	chr2R	19957439	19957464	chr2R	19962631	19962663	copia	7	5196	2.0	2.0	2.0	2.3	5224	chr2R	19957439	intergenic	CG44623 +	chr2R	19960051	intergenic	not near genes	chr2R	19962663	intergenic	not near genes	chr2R_7_19960001	chr2R_19960001	RAL-101
426	chr2R	20069242	20069260	chr2R	20071872	20071890	opus	5	2630	4.0	1.5	2.8	1.3	2648	chr2R	20069242	intergenic	not near genes	chr2R	20070566	intergenic	not near genes	chr2R	20071890	intergenic	not near genes	chr2R_5_20070001	chr2R_20070001	RAL-101
432	chr2R	20739440	20739476	chr2R	20744208	20744244	F-element	8	4767	2.5	2.5	2.5	2.3	4804	chr2R	20739440	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744244	intron	dpr +	chr2R_8_20740001	chr2R_20740001	RAL-101
442	chr2R	21738282	21738311	chr2R	21747442	21747471	roo	4	9158	1.0	3.0	2.0	1.3	9189	chr2R	21738282	intergenic	not near genes	chr2R	21742876	intergenic	not near genes	chr2R	21747471	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-101
443	chr2R	21753087	21753116	chr2R	21753568	21753601	roo	5	479	2.0	2.5	2.2	1.6	514	chr2R	21753087	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753601	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-101
452	chr2R	22349692	22349721	chr2R	22351473	22351504	jockey	13	1783	2.5	0.5	1.5	5.2	1812	chr2R	22349692	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351504	intron	Liprin-gamma -	chr2R_13_22350001	chr2R_22350001	RAL-101
454	chr2R	22360383	22360415	chr2R	22360816	22360830	jockey	5	428	1.5	2.5	2.0	1.7	447	chr2R	22360383	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	RAL-101
455	chr2R	22525748	22525783	chr2R	22529303	22529338	jockey	5	3555	0.0	1.5	0.8	2.8	3590	chr2R	22525748	intron	px -	chr2R	22527543	intron	px -	chr2R	22529338	intron	px -	chr2R_5_22525001	chr2R_22525001	RAL-101
462	chr2R	22774962	22774997	chr2R	22775381	22775416	jockey	12	418	3.5	0.0	1.8	4.3	454	chr2R	22774962	intron	CG42260 -	chr2R	22775189	intron	CG42260 -	chr2R	22775416	intron	CG42260 -	chr2R_12_22775001	chr2R_22775001	RAL-101
463	chr2R	22843023	22843041	chr2R	22844984	22845003	flea	4	1962	4.5	1.5	3.0	1.0	1980	chr2R	22843023	intergenic	CG9826 +	chr2R	22844013	intergenic	not near genes	chr2R	22845003	intergenic	not near genes	chr2R_4_22840001	chr2R_22840001	RAL-101
467	chr2R	23402615	23402642	chr2R	23407691	23407717	flea	5	5075	0.5	1.5	1.0	2.5	5102	chr2R	23402615	intergenic	CG3520 -	chr2R	23405166	intergenic	not near genes	chr2R	23407717	intergenic	not near genes	chr2R_5_23405001	chr2R_23405001	RAL-101
470	chr2R	23529574	23529605	chr2R	23537149	23537157	412	8	7563	2.0	2.0	2.0	2.7	7583	chr2R	23529574	intron	bw -	chr2R	23533366	intron	bw -	chr2R	23537157	exon	bw -	chr2R_8_23530001	chr2R_23530001	RAL-101
472	chr2R	23914299	23914330	chr2R	23921923	23921925	412	9	7614	3.0	6.5	4.8	1.6	7626	chr2R	23914299	exon	kcc +	chr2R	23918112	intron	kcc +	chr2R	23921925	intron	kcc +	chr2R_9_23915001	chr2R_23915001	RAL-101
476	chr2R	24147086	24147097	chr2R	24154664	24154675	412	5	7578	4.5	5.0	4.8	0.9	7589	chr2R	24147086	intron	Dat +	chr2R	24150880	intron	Dat +	chr2R	24154675	intron	Dat +	chr2R_5_24150001	chr2R_24150001	RAL-101
479	chr2R	24353429	24353446	chr2R	24361791	24361808	roo	4	8362	2.5	3.5	3.0	1.0	8379	chr2R	24353429	intron,intron	bs +,CR44811 -	chr2R	24357618	intron,intron	bs +,CR44811 -	chr2R	24361808	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-101
485	chr2R	24647588	24647611	chr2R	24655144	24655168	412	7	7554	3.0	2.5	2.8	1.8	7580	chr2R	24647588	intergenic	not near genes	chr2R	24651378	intergenic	not near genes	chr2R	24655168	intergenic	not near genes	chr2R_7_24650001	chr2R_24650001	RAL-101
486	chr2R	24727883	24727917	chr2R	24735391	24735425	mdg1	10	7505	6.0	3.5	4.8	1.7	7542	chr2R	24727883	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735425	intron	Mid1 -	chr2R_10_24730001	chr2R_24730001	RAL-101
487	chr2R	24763610	24763644	chr2R	24765586	24765612	G2	11	1975	5.5	0.5	3.0	2.8	2002	chr2R	24763610	exon	CG3894 +	chr2R	24764611	intron	CG3894 +	chr2R	24765612	exon	CG3894 +	chr2R_11_24760001	chr2R_24760001	RAL-101
490	chr3L	110222	110242	chr3L	119389	119409	roo	6	9167	2.0	2.0	2.0	2.0	9187	chr3L	110222	intergenic	not near genes	chr3L	114816	intergenic	not near genes	chr3L	119409	intergenic	not near genes	chr3L_6_110001	chr3L_110001	RAL-101
491	chr3L	402690	402714	chr3L	409740	409764	297	12	7050	6.5	3.5	5.0	2.0	7074	chr3L	402690	intergenic	not near genes	chr3L	406227	intergenic	not near genes	chr3L	409764	intergenic	not near genes	chr3L_12_405001	chr3L_405001	RAL-101
498	chr3L	858010	858032	chr3L	866485	866495	Tirant	6	8475	3.5	3.0	3.2	1.4	8485	chr3L	858010	intergenic	not near genes	chr3L	862252	intergenic	not near genes	chr3L	866495	intergenic	CG12502 +	chr3L_6_860001	chr3L_860001	RAL-101
500	chr3L	925202	925208	chr3L	932628	932634	mdg1	4	7426	0.0	3.0	1.5	1.6	7432	chr3L	925202	intron	Glut1 +	chr3L	928918	intron	Glut1 +	chr3L	932634	intron	Glut1 +	chr3L_4_925001	chr3L_925001	RAL-101
501	chr3L	939772	939802	chr3L	940893	940923	jockey	8	1121	4.0	2.0	3.0	2.0	1151	chr3L	939772	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940923	intron	Glut1 +	chr3L_8_940001	chr3L_940001	RAL-101
504	chr3L	1219595	1219621	chr3L	1227328	1227354	412	6	7733	5.0	3.0	4.0	1.2	7759	chr3L	1219595	intron	mwh +	chr3L	1223474	intron	mwh +	chr3L	1227354	intron	mwh +	chr3L_6_1220001	chr3L_1220001	RAL-101
510	chr3L	1505996	1506024	chr3L	1513592	1513621	17.6	11	7594	5.0	2.5	3.8	2.3	7625	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509808	intron,intron	Psa +,cue -	chr3L	1513621	intron,intron	Psa +,cue -	chr3L_11_1505001	chr3L_1505001	RAL-101
519	chr3L	2447504	2447534	chr3L	2456660	2456690	roo	7	9146	1.0	2.5	1.8	2.5	9186	chr3L	2447504	intron	CG45186 +	chr3L	2452097	intron	CG45186 +	chr3L	2456690	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-101
524	chr3L	2927839	2927863	chr3L	2936115	2936140	Tirant	5	8277	2.5	0.0	1.2	2.3	8301	chr3L	2927839	intron	Shab +	chr3L	2931990	intron	Shab +	chr3L	2936140	intron	Shab +	chr3L_5_2930001	chr3L_2930001	RAL-101
526	chr3L	3061284	3061309	chr3L	3069866	3069889	Tirant	4	8576	5.0	0.5	2.8	1.1	8605	chr3L	3061284	intron	CG32486 -	chr3L	3065586	intron	CG32486 -	chr3L	3069889	intron	CG32486 -	chr3L_4_3065001	chr3L_3065001	RAL-101
527	chr3L	3281440	3281474	chr3L	3281935	3281970	Doc	7	495	0.0	6.0	3.0	1.8	530	chr3L	3281440	intron	CG12017 +	chr3L	3281705	intron	CG12017 +	chr3L	3281970	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-101
529	chr3L	3475078	3475110	chr3L	3475522	3475553	jockey	8	441	3.5	4.0	3.8	1.7	475	chr3L	3475078	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_8_3475001	chr3L_3475001	RAL-101
531	chr3L	3601305	3601318	chr3L	3606616	3606629	copia	5	5311	4.5	2.0	3.2	1.2	5324	chr3L	3601305	intron	Eip63E +	chr3L	3603967	intron	Eip63E +	chr3L	3606629	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	RAL-101
543	chr3L	5034158	5034189	chr3L	5043310	5043341	roo	5	9151	3.5	0.5	2.0	1.7	9183	chr3L	5034158	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043341	intron	Con -	chr3L_5_5035001	chr3L_5035001	RAL-101
553	chr3L	5910031	5910054	chr3L	5910272	5910295	pogo	4	241	1.5	0.5	1.0	2.0	264	chr3L	5910031	intron	CG13288 +	chr3L	5910163	intron	CG13288 +	chr3L	5910295	intron	CG13288 +	chr3L_4_5910001	chr3L_5910001	RAL-101
557	chr3L	6220926	6220943	chr3L	6230077	6230095	roo	6	9152	5.0	3.5	4.2	1.2	9169	chr3L	6220926	5` UTR	pncr008:3L +	chr3L	6225510	intergenic	not near genes	chr3L	6230095	intergenic	not near genes	chr3L_6_6225001	chr3L_6225001	RAL-101
558	chr3L	6335009	6335034	chr3L	6335480	6335504	297	5	467	1.0	2.0	1.5	2.0	495	chr3L	6335009	intron	CG13300 -	chr3L	6335256	intron	CG13300 -	chr3L	6335504	intron	CG13300 -	chr3L_5_6335001	chr3L_6335001	RAL-101
560	chr3L	6855936	6855951	chr3L	6860718	6860734	Doc	5	4783	4.0	5.5	4.8	0.9	4798	chr3L	6855936	intergenic	not near genes	chr3L	6858335	intergenic	not near genes	chr3L	6860734	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-101
561	chr3L	6887526	6887546	chr3L	6895018	6895038	roo	6	7492	3.0	1.5	2.2	1.9	7512	chr3L	6887526	intergenic	not near genes	chr3L	6891282	intergenic	not near genes	chr3L	6895038	intergenic	not near genes	chr3L_6_6890001	chr3L_6890001	RAL-101
573	chr3L	7793712	7793734	chr3L	7800764	7800786	297	6	7051	4.0	1.5	2.8	1.6	7074	chr3L	7793712	intron	CG32369 -	chr3L	7797249	intron	CG32369 -	chr3L	7800786	intron	CG32369 -	chr3L_6_7795001	chr3L_7795001	RAL-101
574	chr3L	7886513	7886539	chr3L	7889030	7889055	Stalker4	6	2518	1.5	2.5	2.0	2.0	2542	chr3L	7886513	intron	CG32365 +	chr3L	7887784	intron	CG32365 +	chr3L	7889055	intron	CG32365 +	chr3L_6_7885001	chr3L_7885001	RAL-101
576	chr3L	7985392	7985401	chr3L	7987720	7987728	NOF	5	2328	1.0	3.5	2.2	1.6	2336	chr3L	7985392	intron	nmo +	chr3L	7986560	intron	nmo +	chr3L	7987728	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-101
586	chr3L	9076928	9076954	chr3L	9084488	9084493	412	11	7558	5.0	3.5	4.2	2.1	7565	chr3L	9076928	exon	Tequila +	chr3L	9080710	intron	Tequila +	chr3L	9084493	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	RAL-101
587	chr3L	9130558	9130581	chr3L	9134319	9134341	412	4	3761	4.0	3.5	3.8	0.8	3783	chr3L	9130558	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134341	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-101
589	chr3L	9219247	9219274	chr3L	9219919	9219937	jockey	10	670	6.0	4.5	5.2	1.6	690	chr3L	9219247	intergenic	not near genes	chr3L	9219592	intergenic	not near genes	chr3L	9219937	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-101
590	chr3L	9270615	9270649	chr3L	9278370	9278396	roo	6	7752	3.5	1.0	2.2	1.9	7781	chr3L	9270615	intron	GluRIB +	chr3L	9274506	intron	GluRIB +	chr3L	9278396	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	RAL-101
592	chr3L	9533754	9533784	chr3L	9541314	9541344	412	10	7552	1.0	5.0	3.0	2.5	7590	chr3L	9533754	intergenic	not near genes	chr3L	9537549	intergenic	not near genes	chr3L	9541344	intergenic	not near genes	chr3L_10_9535001	chr3L_9535001	RAL-101
593	chr3L	9575908	9575940	chr3L	9580988	9581017	jockey	4	5079	4.5	5.0	4.8	0.7	5109	chr3L	9575908	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581017	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-101
604	chr3L	10414952	10414977	chr3L	10417319	10417349	Doc	5	2371	1.0	1.5	1.2	2.3	2397	chr3L	10414952	intergenic	CG12362 +	chr3L	10416150	intergenic	not near genes	chr3L	10417349	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	RAL-101
613	chr3L	11087065	11087089	chr3L	11088850	11088878	S-element	6	1787	0.5	2.5	1.5	2.4	1813	chr3L	11087065	intron	JIL-1 -	chr3L	11087972	intron	JIL-1 -	chr3L	11088878	intron	JIL-1 -	chr3L_6_11085001	chr3L_11085001	RAL-101
614	chr3L	11264473	11264499	chr3L	11271423	11271450	17.6	4	6951	2.5	0.0	1.2	1.8	6977	chr3L	11264473	intergenic	not near genes	chr3L	11267962	intergenic	not near genes	chr3L	11271450	intergenic	not near genes	chr3L_4_11265001	chr3L_11265001	RAL-101
635	chr3L	12919274	12919309	chr3L	12924747	12924776	Rt1c	6	5470	5.0	2.0	3.5	1.3	5502	chr3L	12919274	intergenic	not near genes	chr3L	12922025	intergenic	not near genes	chr3L	12924776	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-101
636	chr3L	12957790	12957819	chr3L	12962272	12962301	copia	5	4482	2.0	3.5	2.8	1.3	4511	chr3L	12957790	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962301	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	RAL-101
647	chr3L	13525154	13525187	chr3L	13532950	13532981	roo	12	7795	3.0	5.0	4.0	2.4	7827	chr3L	13525154	intergenic	not near genes	chr3L	13529068	intergenic	not near genes	chr3L	13532981	intergenic	not near genes	chr3L_12_13525001	chr3L_13525001	RAL-101
651	chr3L	14312027	14312057	chr3L	14316841	14316871	X-element	6	4812	0.0	1.5	0.8	3.3	4844	chr3L	14312027	exon	fz +	chr3L	14314449	intron	fz +	chr3L	14316871	intron	fz +	chr3L_6_14310001	chr3L_14310001	RAL-101
654	chr3L	14721187	14721210	chr3L	14723022	14723052	Rt1c	4	1840	2.5	4.5	3.5	0.9	1865	chr3L	14721187	intron	ome +	chr3L	14722120	intron	ome +	chr3L	14723052	intron	ome +	chr3L_4_14720001	chr3L_14720001	RAL-101
659	chr3L	15423778	15423784	chr3L	15426622	15426628	opus	4	2844	2.0	3.5	2.8	1.1	2850	chr3L	15423778	intergenic	not near genes	chr3L	15425203	intergenic	not near genes	chr3L	15426628	intergenic	not near genes	chr3L_4_15425001	chr3L_15425001	RAL-101
668	chr3L	16493977	16494011	chr3L	16494494	16494523	jockey	9	515	2.5	6.5	4.5	1.6	546	chr3L	16493977	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494523	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_9_16490001	chr3L_16490001	RAL-101
676	chr3L	16945727	16945759	chr3L	16954879	16954912	roo	11	9150	3.5	2.0	2.8	2.9	9185	chr3L	16945727	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954912	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	RAL-101
678	chr3L	17085005	17085034	chr3L	17094154	17094156	roo	6	9144	1.5	1.5	1.5	2.4	9151	chr3L	17085005	intron	Rbp6 -	chr3L	17089580	intron	Rbp6 -	chr3L	17094156	intron	Rbp6 -	chr3L_6_17085001	chr3L_17085001	RAL-101
681	chr3L	17516983	17517000	chr3L	17524541	17524557	412	4	7558	2.0	1.5	1.8	1.4	7574	chr3L	17516983	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524557	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	RAL-101
692	chr3L	18772423	18772438	chr3L	18781093	18781119	roo	7	8679	1.0	2.5	1.8	2.5	8696	chr3L	18772423	intron	ftz-f1 -	chr3L	18776771	intron	ftz-f1 -	chr3L	18781119	intron	ftz-f1 -	chr3L_7_18775001	chr3L_18775001	RAL-101
693	chr3L	18833784	18833811	chr3L	18834946	18834975	1360	8	1164	1.0	2.0	1.5	3.2	1191	chr3L	18833784	intron	Indy -	chr3L	18834380	intron	Indy -	chr3L	18834975	intron	Indy -	chr3L_8_18830001	chr3L_18830001	RAL-101
696	chr3L	19008837	19008870	chr3L	19009176	19009208	jockey	7	334	1.0	1.0	1.0	3.5	371	chr3L	19008837	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009208	intron	nkd -	chr3L_7_19005001	chr3L_19005001	RAL-101
697	chr3L	19115639	19115671	chr3L	19115819	19115848	BS	9	179	6.0	3.5	4.8	1.6	209	chr3L	19115639	intron	CG14082 -	chr3L	19115744	intron	CG14082 -	chr3L	19115848	intron	CG14082 -	chr3L_9_19115001	chr3L_19115001	RAL-101
698	chr3L	19117052	19117076	chr3L	19124499	19124523	mdg1	11	7446	2.0	3.0	2.5	3.1	7471	chr3L	19117052	intron	CG14082 -	chr3L	19120788	intron	CG14082 -	chr3L	19124523	intron	CG14082 -	chr3L_11_19120001	chr3L_19120001	RAL-101
699	chr3L	19208058	19208081	chr3L	19209432	19209455	Doc	7	1374	2.5	2.5	2.5	2.0	1397	chr3L	19208058	intron	fz2 -	chr3L	19208756	intron	fz2 -	chr3L	19209455	intron	fz2 -	chr3L_7_19205001	chr3L_19205001	RAL-101
704	chr3L	19861825	19861851	chr3L	19863611	19863639	S-element	8	1787	3.5	0.0	1.8	2.9	1814	chr3L	19861825	5` UTR	CR45433 +	chr3L	19862732	intergenic	not near genes	chr3L	19863639	intergenic	not near genes	chr3L_8_19860001	chr3L_19860001	RAL-101
709	chr3L	20257343	20257359	chr3L	20258462	20258479	pogo	6	1120	1.0	4.5	2.8	1.6	1136	chr3L	20257343	intron	rdgC +	chr3L	20257911	intron	rdgC +	chr3L	20258479	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-101
711	chr3L	20476753	20476763	chr3L	20484352	20484362	springer	5	7599	0.5	1.0	0.8	2.8	7609	chr3L	20476753	3` UTR	isoQC +	chr3L	20480558	intergenic	not near genes	chr3L	20484362	3` UTR	ZnT77C -	chr3L_5_20480001	chr3L_20480001	RAL-101
713	chr3L	20590066	20590096	chr3L	20590602	20590614	412	4	531	1.0	4.5	2.8	1.1	548	chr3L	20590066	intergenic	not near genes	chr3L	20590340	intergenic	not near genes	chr3L	20590614	intergenic	not near genes	chr3L_4_20590001	chr3L_20590001	RAL-101
717	chr3L	21014923	21014942	chr3L	21023402	21023421	Tirant	4	8480	4.0	4.5	4.2	0.8	8498	chr3L	21014923	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023421	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-101
719	chr3L	21306147	21306174	chr3L	21315306	21315313	roo	5	9155	0.5	0.5	0.5	3.3	9166	chr3L	21306147	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310730	intron	Pc -	chr3L	21315313	3` UTR	Pc -	chr3L_5_21310001	chr3L_21310001	RAL-101
721	chr3L	21498835	21498866	chr3L	21500471	21500502	1360	8	1633	3.0	1.0	2.0	2.7	1667	chr3L	21498835	intron	Glg1 -	chr3L	21499668	intron	Glg1 -	chr3L	21500502	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	RAL-101
722	chr3L	21749328	21749350	chr3L	21754488	21754510	Doc	5	5159	2.0	5.0	3.5	1.1	5182	chr3L	21749328	intron	Syn1 -	chr3L	21751919	intron	Syn1 -	chr3L	21754510	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-101
732	chr3L	22555770	22555800	chr3L	22563239	22563270	blood	10	7466	2.5	1.5	2.0	3.3	7500	chr3L	22555770	intergenic	not near genes	chr3L	22559520	intergenic	not near genes	chr3L	22563270	intergenic	not near genes	chr3L_10_22555001	chr3L_22555001	RAL-101
733	chr3L	22577632	22577646	chr3L	22582404	22582414	Doc	7	4783	5.5	3.0	4.2	1.3	4782	chr3L	22577632	intergenic	not near genes	chr3L	22580023	intergenic	not near genes	chr3L	22582414	3` UTR	CG14459 -	chr3L_7_22580001	chr3L_22580001	RAL-101
734	chr3L	22617188	22617222	chr3L	22624640	22624673	blood	9	7450	3.0	1.0	2.0	3.0	7485	chr3L	22617188	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624673	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	RAL-101
735	chr3L	22761384	22761399	chr3L	22766818	22766832	Ivk	5	5433	1.0	1.0	1.0	2.5	5448	chr3L	22761384	intron	SPoCk +	chr3L	22764108	intron	SPoCk +	chr3L	22766832	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-101
739	chr3L	22989862	22989887	chr3L	22996836	22996861	297	4	6974	1.5	1.0	1.2	1.8	6999	chr3L	22989862	intergenic	not near genes	chr3L	22993362	intergenic	not near genes	chr3L	22996861	intergenic	not near genes	chr3L_4_22990001	chr3L_22990001	RAL-101
742	chr3L	24168790	24168820	chr3L	24176118	24176135	ZAM	4	7324	2.0	6.0	4.0	0.8	7345	chr3L	24168790	intron	Snap25 +	chr3L	24172462	intron	Snap25 +	chr3L	24176135	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-101
747	chr3R	4408410	4408441	chr3R	4412714	4412745	Juan	6	4304	2.5	1.0	1.8	2.1	4335	chr3R	4408410	intron	CG32944 -	chr3R	4410578	intron	CG32944 -	chr3R	4412745	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-101
748	chr3R	4609548	4609579	chr3R	4610712	4610743	1360	8	1164	2.5	2.0	2.2	2.5	1195	chr3R	4609548	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610743	intergenic	not near genes	chr3R_8_4610001	chr3R_4610001	RAL-101
751	chr3R	4753248	4753269	chr3R	4757550	4757572	F-element	9	4302	4.5	5.0	4.8	1.6	4324	chr3R	4753248	intron,intron	atms +,CG44098 -	chr3R	4755410	intron,intron	atms +,CG44098 -	chr3R	4757572	intron,exon	atms +,CG44098 -	chr3R_9_4755001	chr3R_4755001	RAL-101
757	chr3R	5045845	5045863	chr3R	5052945	5052965	HMS-Beagle	4	7101	3.5	0.5	2.0	1.3	7120	chr3R	5045845	intron	CR43635 -	chr3R	5049405	intergenic	not near genes	chr3R	5052965	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	RAL-101
760	chr3R	5338394	5338429	chr3R	5343571	5343606	Rt1c	11	5177	2.5	4.0	3.2	2.6	5212	chr3R	5338394	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343606	intron	mtd -	chr3R_11_5340001	chr3R_5340001	RAL-101
768	chr3R	5746021	5746046	chr3R	5746258	5746287	pogo	5	240	2.5	3.0	2.8	1.3	266	chr3R	5746021	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_5_5745001	chr3R_5745001	RAL-101
769	chr3R	5822376	5822413	chr3R	5823543	5823580	1360	12	1167	1.5	5.5	3.5	2.7	1204	chr3R	5822376	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823580	3` UTR	CG2023 -	chr3R_12_5820001	chr3R_5820001	RAL-101
771	chr3R	6158507	6158536	chr3R	6167090	6167119	Tirant	8	8578	3.5	2.5	3.0	2.0	8612	chr3R	6158507	intergenic	not near genes	chr3R	6162813	intergenic	not near genes	chr3R	6167119	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	RAL-101
773	chr3R	6206280	6206317	chr3R	6206497	6206534	BS	10	217	6.5	3.5	5.0	1.7	254	chr3R	6206280	exon	Osi24 +	chr3R	6206407	intron	Osi24 +	chr3R	6206534	intron	Osi24 +	chr3R_10_6205001	chr3R_6205001	RAL-101
780	chr3R	6737498	6737528	chr3R	6739285	6739315	Doc	5	1787	1.5	2.5	2.0	1.7	1817	chr3R	6737498	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739315	intron	pb -	chr3R_5_6735001	chr3R_6735001	RAL-101
793	chr3R	7729466	7729496	chr3R	7737404	7737434	Stalker2	7	7938	1.0	3.0	2.0	2.3	7968	chr3R	7729466	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737434	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	RAL-101
796	chr3R	8207557	8207582	chr3R	8208400	8208427	F-element	5	844	2.0	0.5	1.2	2.3	870	chr3R	8207557	intergenic	not near genes	chr3R	8207992	intergenic	not near genes	chr3R	8208427	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	RAL-101
802	chr3R	8403005	8403039	chr3R	8412171	8412205	roo	9	9166	4.0	4.5	4.2	1.7	9200	chr3R	8403005	intron	CG45263 -	chr3R	8407605	intron	CG45263 -	chr3R	8412205	intron	CG45263 -	chr3R_9_8405001	chr3R_8405001	RAL-101
806	chr3R	8570481	8570511	chr3R	8575117	8575147	HMS-Beagle	7	4636	2.0	2.0	2.0	2.3	4666	chr3R	8570481	intergenic	not near genes	chr3R	8572814	intergenic	not near genes	chr3R	8575147	intergenic	not near genes	chr3R_7_8570001	chr3R_8570001	RAL-101
808	chr3R	8601769	8601795	chr3R	8610921	8610948	roo	8	9151	5.5	3.5	4.5	1.5	9179	chr3R	8601769	intron	5-HT2B +	chr3R	8606358	intron	5-HT2B +	chr3R	8610948	intron	5-HT2B +	chr3R_8_8605001	chr3R_8605001	RAL-101
817	chr3R	9278786	9278811	chr3R	9284046	9284069	Rt1a	6	5260	2.5	7.0	4.8	1.0	5283	chr3R	9278786	intergenic	not near genes	chr3R	9281428	intergenic	not near genes	chr3R	9284069	intergenic	not near genes	chr3R_6_9280001	chr3R_9280001	RAL-101
829	chr3R	10804173	10804190	chr3R	10811705	10811722	17.6	4	7532	0.5	2.0	1.2	1.8	7549	chr3R	10804173	intergenic	CG14692 -	chr3R	10807948	intergenic	not near genes	chr3R	10811722	3` UTR	CG14693 -	chr3R_4_10805001	chr3R_10805001	RAL-101
838	chr3R	11379235	11379257	chr3R	11388390	11388412	roo	4	9155	3.0	4.0	3.5	0.9	9177	chr3R	11379235	intron	pros +	chr3R	11383824	intron	pros +	chr3R	11388412	intron	pros +	chr3R_4_11380001	chr3R_11380001	RAL-101
843	chr3R	11841077	11841097	chr3R	11846267	11846286	BS	5	5190	4.0	4.5	4.2	1.0	5209	chr3R	11841077	intron	CG6959 -	chr3R	11843682	intron	CG6959 -	chr3R	11846286	intron	CG6959 -	chr3R_5_11840001	chr3R_11840001	RAL-101
844	chr3R	11957854	11957880	chr3R	11958137	11958163	S-element	4	283	0.0	0.0	0.0	4.0	309	chr3R	11957854	intergenic	not near genes	chr3R	11958008	intergenic	not near genes	chr3R	11958163	intergenic	not near genes	chr3R_4_11955001	chr3R_11955001	RAL-101
853	chr3R	12920153	12920186	chr3R	12925356	12925389	copia	10	5202	2.5	3.5	3.0	2.5	5236	chr3R	12920153	intron	beat-Vb +	chr3R	12922771	intron	beat-Vb +	chr3R	12925389	intron	beat-Vb +	chr3R_10_12920001	chr3R_12920001	RAL-101
857	chr3R	13135828	13135854	chr3R	13138003	13138028	pogo	8	2175	4.5	1.0	2.8	2.1	2200	chr3R	13135828	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138028	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_8_13135001	chr3R_13135001	RAL-101
859	chr3R	13143055	13143062	chr3R	13148619	13148637	mdg3	6	5573	0.5	5.0	2.8	1.6	5582	chr3R	13143055	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145846	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148637	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13145001	chr3R_13145001	RAL-101
860	chr3R	13311639	13311642	chr3R	13318890	13318891	Doc	4	7250	13.0	2.5	7.8	0.5	7252	chr3R	13311639	exon	CG32473 +	chr3R	13315265	intergenic	not near genes	chr3R	13318891	intergenic	CG45080 -	chr3R_4_13315001	chr3R_13315001	RAL-101
867	chr3R	14246390	14246415	chr3R	14247886	14247911	jockey	14	1494	9.5	3.0	6.2	1.9	1521	chr3R	14246390	intergenic	not near genes	chr3R	14247150	intergenic	not near genes	chr3R	14247911	intergenic	not near genes	chr3R_14_14245001	chr3R_14245001	RAL-101
884	chr3R	15601165	15601195	chr3R	15608686	15608717	412	7	7521	1.0	3.5	2.2	2.2	7552	chr3R	15601165	intergenic	not near genes	chr3R	15604941	intergenic	not near genes	chr3R	15608717	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-101
891	chr3R	16756321	16756352	chr3R	16762510	16762542	diver	10	6190	2.5	1.0	1.8	3.6	6221	chr3R	16756321	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762542	intron	bxd -	chr3R_10_16755001	chr3R_16755001	RAL-101
897	chr3R	17925858	17925886	chr3R	17927325	17927352	hobo	9	1467	4.0	8.5	6.2	1.2	1494	chr3R	17925858	intron	cpo +	chr3R	17926605	intron	cpo +	chr3R	17927352	intron	cpo +	chr3R_9_17925001	chr3R_17925001	RAL-101
902	chr3R	18606503	18606528	chr3R	18610735	18610760	F-element	5	4232	1.5	0.5	1.0	2.5	4257	chr3R	18606503	intron,intron	qin +,CG14304 -	chr3R	18608632	intron,intron	qin +,CG14304 -	chr3R	18610760	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	RAL-101
933	chr3R	21141677	21141699	chr3R	21150153	21150165	Tirant	7	8476	3.0	4.0	3.5	1.6	8488	chr3R	21141677	intron	SNF4Agamma +	chr3R	21145921	intron	SNF4Agamma +	chr3R	21150165	intron	SNF4Agamma +	chr3R_7_21145001	chr3R_21145001	RAL-101
942	chr3R	21761120	21761151	chr3R	21768512	21768540	mdg1	9	7390	3.5	5.0	4.2	1.7	7420	chr3R	21761120	exon	CG42335 +	chr3R	21764830	intron	CG42335 +	chr3R	21768540	exon	CG42335 +	chr3R_9_21760001	chr3R_21760001	RAL-101
957	chr3R	22450542	22450578	chr3R	22453181	22453217	NOF	9	2638	1.5	3.5	2.5	2.6	2675	chr3R	22450542	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453217	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-101
979	chr3R	23558404	23558427	chr3R	23560185	23560208	Bari1	4	1781	2.5	1.5	2.0	1.3	1804	chr3R	23558404	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560208	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-101
980	chr3R	23684698	23684729	chr3R	23685181	23685215	roo	10	477	2.0	5.0	3.5	2.2	517	chr3R	23684698	exon	CG18754 +	chr3R	23684956	intron	CG18754 +	chr3R	23685215	exon	CG18754 +	chr3R_10_23680001	chr3R_23680001	RAL-101
985	chr3R	24072084	24072102	chr3R	24072522	24072540	jockey	9	438	6.5	0.0	3.2	2.1	456	chr3R	24072084	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072540	intron	4EHP -	chr3R_9_24070001	chr3R_24070001	RAL-101
986	chr3R	24076926	24076946	chr3R	24078381	24078413	hobo	7	1465	6.0	3.0	4.5	1.3	1487	chr3R	24076926	intron	4EHP -	chr3R	24077670	intron	4EHP -	chr3R	24078413	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	RAL-101
987	chr3R	24207222	24207246	chr3R	24212298	24212322	flea	8	5076	2.0	7.0	4.5	1.5	5100	chr3R	24207222	intron	twin -	chr3R	24209772	intron	twin -	chr3R	24212322	intron	twin -	chr3R_8_24205001	chr3R_24205001	RAL-101
991	chr3R	24493284	24493305	chr3R	24493513	24493533	BS	5	228	0.5	3.5	2.0	1.7	249	chr3R	24493284	intergenic	not near genes	chr3R	24493408	intergenic	not near genes	chr3R	24493533	intergenic	not near genes	chr3R_5_24490001	chr3R_24490001	RAL-101
992	chr3R	24730096	24730122	chr3R	24732473	24732480	Doc	5	2373	1.5	0.0	0.8	2.8	2384	chr3R	24730096	intron	tok +	chr3R	24731288	intron	tok +	chr3R	24732480	intron	tok +	chr3R_5_24730001	chr3R_24730001	RAL-101
994	chr3R	24927129	24927155	chr3R	24931920	24931946	Doc	6	4791	1.0	1.5	1.2	2.7	4817	chr3R	24927129	intergenic	Trf4-2 +	chr3R	24929538	intergenic	not near genes	chr3R	24931946	intergenic	CG11771 +	chr3R_6_24925001	chr3R_24925001	RAL-101
1002	chr3R	25832695	25832717	chr3R	25841877	25841899	roo	6	9182	4.5	4.5	4.5	1.1	9204	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837297	intron	alpha4GT2 +	chr3R	25841899	exon	alpha4GT2 +	chr3R_6_25835001	chr3R_25835001	RAL-101
1012	chr3R	26376336	26376358	chr3R	26385485	26385517	roo	6	9156	2.0	0.0	1.0	3.0	9181	chr3R	26376336	intergenic	not near genes	chr3R	26380926	intergenic	not near genes	chr3R	26385517	intergenic	not near genes	chr3R_6_26380001	chr3R_26380001	RAL-101
1015	chr3R	26558329	26558361	chr3R	26565642	26565653	Stalker4	5	7308	3.0	2.5	2.8	1.3	7324	chr3R	26558329	intron	scrib +	chr3R	26561991	intron	scrib +	chr3R	26565653	intron	scrib +	chr3R_5_26560001	chr3R_26560001	RAL-101
1018	chr3R	26642729	26642758	chr3R	26643122	26643152	jockey	5	394	3.5	2.0	2.8	1.3	423	chr3R	26642729	intergenic	not near genes	chr3R	26642940	intergenic	not near genes	chr3R	26643152	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	RAL-101
1024	chr3R	26810551	26810581	chr3R	26811036	26811066	roo	4	485	2.5	3.0	2.8	1.1	515	chr3R	26810551	intron	Tl +	chr3R	26810808	intron	Tl +	chr3R	26811066	intron	Tl +	chr3R_4_26810001	chr3R_26810001	RAL-101
1027	chr3R	27140522	27140538	chr3R	27148132	27148148	412	6	7608	5.5	5.5	5.5	0.9	7626	chr3R	27140522	intron	CG6051 -	chr3R	27144335	intron	CG6051 -	chr3R	27148148	intron	CG6051 -	chr3R_6_27140001	chr3R_27140001	RAL-101
1036	chr3R	27725567	27725593	chr3R	27731009	27731035	I-element	4	5441	4.0	2.5	3.2	1.0	5468	chr3R	27725567	intergenic	not near genes	chr3R	27728301	intergenic	not near genes	chr3R	27731035	intergenic	not near genes	chr3R_4_27725001	chr3R_27725001	RAL-101
1040	chr3R	27856768	27856790	chr3R	27858251	27858272	hopper2	7	1483	2.0	3.5	2.8	1.8	1504	chr3R	27856768	intron	CG34353 -	chr3R	27857520	intron	CG34353 -	chr3R	27858272	intron	CG34353 -	chr3R_7_27855001	chr3R_27855001	RAL-101
1041	chr3R	27862956	27862972	chr3R	27868261	27868277	Transpac	5	5305	0.5	2.0	1.2	2.3	5321	chr3R	27862956	intron	CG34353 -	chr3R	27865616	intron	CG34353 -	chr3R	27868277	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-101
1042	chr3R	27875698	27875722	chr3R	27882753	27882776	297	4	7055	3.5	3.0	3.2	1.0	7078	chr3R	27875698	intron	CG34353 -	chr3R	27879237	intron	CG34353 -	chr3R	27882776	intron	CG34353 -	chr3R_4_27875001	chr3R_27875001	RAL-101
1045	chr3R	28068497	28068517	chr3R	28073939	28073958	I-element	5	5442	1.5	3.5	2.5	1.4	5461	chr3R	28068497	intron	CG34362 +	chr3R	28071228	intron	CG34362 +	chr3R	28073958	intron	CG34362 +	chr3R_5_28070001	chr3R_28070001	RAL-101
1047	chr3R	28173673	28173696	chr3R	28181103	28181125	mdg1	5	7429	2.5	3.5	3.0	1.2	7452	chr3R	28173673	intron	CG34354 +	chr3R	28177399	intron	CG34354 +	chr3R	28181125	intron	CG34354 +	chr3R_5_28175001	chr3R_28175001	RAL-101
1048	chr3R	28253348	28253371	chr3R	28255857	28255881	jockey	7	2510	3.5	3.5	3.5	1.6	2533	chr3R	28253348	intergenic	not near genes	chr3R	28254614	intergenic	not near genes	chr3R	28255881	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-101
1049	chr3R	28302111	28302135	chr3R	28302549	28302574	jockey	5	439	1.5	2.0	1.8	1.8	463	chr3R	28302111	intergenic	not near genes	chr3R	28302342	intergenic	not near genes	chr3R	28302574	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-101
1058	chr3R	28763900	28763913	chr3R	28771343	28771355	Stalker4	4	7443	0.0	0.0	0.0	4.0	7455	chr3R	28763900	intergenic	not near genes	chr3R	28767628	intergenic	not near genes	chr3R	28771355	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	RAL-101
1059	chr3R	28792876	28792904	chr3R	28797963	28797989	jockey	7	5087	2.0	3.5	2.8	1.8	5113	chr3R	28792876	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28797989	intergenic	not near genes	chr3R_7_28795001	chr3R_28795001	RAL-101
1065	chr3R	29079400	29079409	chr3R	29080772	29080781	NOF	4	1372	0.0	1.5	0.8	2.2	1381	chr3R	29079400	intron	CG11873 +	chr3R	29080090	intron	CG11873 +	chr3R	29080781	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-101
1070	chr3R	29406635	29406652	chr3R	29407900	29407925	jockey	8	1279	0.5	2.0	1.2	3.6	1290	chr3R	29406635	intron	Ptp99A +	chr3R	29407280	intron	Ptp99A +	chr3R	29407925	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	RAL-101
1077	chr3R	29738284	29738291	chr3R	29739734	29739758	hobo	6	1463	2.5	3.5	3.0	1.5	1474	chr3R	29738284	5` UTR	CG1969 +	chr3R	29739021	intron	CG1969 +	chr3R	29739758	5` UTR	CG1969 +	chr3R_6_29735001	chr3R_29735001	RAL-101
1081	chr3R	29882029	29882051	chr3R	29891186	29891208	roo	4	9157	2.5	3.0	2.8	1.1	9179	chr3R	29882029	intron	CG31038 +	chr3R	29886618	intron	CG31038 +	chr3R	29891208	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-101
1084	chr3R	30084856	30084864	chr3R	30086323	30086331	hobo	5	1466	2.0	1.0	1.5	2.0	1475	chr3R	30084856	intron	sima +	chr3R	30085594	intron	sima +	chr3R	30086331	intron	sima +	chr3R_5_30085001	chr3R_30085001	RAL-101
1085	chr3R	30084865	30084881	chr3R	30086322	30086347	hobo	8	1465	1.0	1.0	1.0	4.0	1482	chr3R	30084865	intron	sima +	chr3R	30085606	intron	sima +	chr3R	30086347	intron	sima +	chr3R_8_30085001	chr3R_30085001	RAL-101
1091	chr3R	30480475	30480513	chr3R	30482940	30482981	jockey	15	2465	3.5	2.0	2.8	3.9	2506	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_15_30480001	chr3R_30480001	RAL-101
1096	chr3R	30679517	30679552	chr3R	30686986	30687021	blood	6	7467	2.0	2.5	2.2	1.9	7504	chr3R	30679517	intergenic	not near genes	chr3R	30683269	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_6_30680001	chr3R_30680001	RAL-101
1107	chr3R	31074229	31074259	chr3R	31081827	31081849	springer	5	7596	5.5	3.5	4.5	0.9	7620	chr3R	31074229	intron	Sox100B +	chr3R	31078039	intron	Sox100B +	chr3R	31081849	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-101
1110	chr3R	31413091	31413123	chr3R	31418290	31418322	copia	6	5198	3.5	0.5	2.0	2.0	5231	chr3R	31413091	intron	Gprk2 +	chr3R	31415706	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	RAL-101
1116	chr3R	31691523	31691533	chr3R	31696300	31696304	Doc	5	4776	4.5	4.0	4.2	1.0	4781	chr3R	31691523	intergenic	not near genes	chr3R	31693914	intergenic	not near genes	chr3R	31696304	intergenic	not near genes	chr3R_5_31690001	chr3R_31690001	RAL-101
1122	chr3R	31997994	31998025	chr3R	32005464	32005472	blood	6	7465	2.5	5.0	3.8	1.2	7478	chr3R	31997994	intron	heph -	chr3R	32001733	intron	heph -	chr3R	32005472	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-101
1125	chr4	671605	671631	chr4	680187	680214	Tirant	5	8583	1.5	3.0	2.2	1.6	8609	chr4	671605	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680214	intron	CG11360 +	chr4_5_675001	chr4_675001	RAL-101
1128	chrX	551420	551451	chrX	558982	559013	412	8	7562	4.0	2.5	3.2	1.9	7593	chrX	551420	intron	Appl +	chrX	555216	intron	Appl +	chrX	559013	intron	Appl +	chrX_8_555001	chrX_555001	RAL-101
1136	chrX	827603	827617	chrX	835395	835409	roo	5	7792	3.5	0.5	2.0	1.7	7806	chrX	827603	intron	CG43867 -	chrX	831506	intron	CG43867 -	chrX	835409	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-101
1137	chrX	906726	906733	chrX	908515	908522	S-element	4	1789	6.0	7.0	6.5	0.5	1796	chrX	906726	intron	CG43867 -	chrX	907624	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_4_905001	chrX_905001	RAL-101
1143	chrX	1357784	1357807	chrX	1367954	1367977	Doc	4	10170	1.0	3.0	2.0	1.3	10193	chrX	1357784	intergenic	png -	chrX	1362880	intergenic	not near genes	chrX	1367977	intergenic	not near genes	chrX_4_1360001	chrX_1360001	RAL-101
1145	chrX	1518040	1518070	chrX	1523442	1523471	jockey	4	5402	2.0	2.5	2.2	1.2	5431	chrX	1518040	intergenic	inc +	chrX	1520756	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-101
1150	chrX	2399842	2399855	chrX	2408195	2408204	roo	5	8352	6.0	0.5	3.2	1.2	8362	chrX	2399842	intergenic	not near genes	chrX	2404023	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_5_2400001	chrX_2400001	RAL-101
1151	chrX	2399858	2399867	chrX	2408191	2408204	roo	6	8343	4.5	0.5	2.5	1.7	8346	chrX	2399858	intergenic	not near genes	chrX	2404031	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-101
1157	chrX	3415028	3415043	chrX	3421205	3421228	3S18	4	6183	1.0	0.0	0.5	2.7	6200	chrX	3415028	intron,intron	CR44999 +,CG12535 -	chrX	3418128	intron,intron	CR44999 +,CG12535 -	chrX	3421228	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-101
1158	chrX	3493104	3493124	chrX	3502257	3502283	roo	4	9158	2.0	0.0	1.0	2.0	9179	chrX	3493104	intron,intron	CR44999 +,Gas8 -	chrX	3497694	intron,intron	CR44999 +,Gas8 -	chrX	3502283	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-101
1160	chrX	3597556	3597576	chrX	3619723	3619727	roo	6	22165	3.0	1.0	2.0	2.0	22171	chrX	3597556	intron	AstA-R1 +	chrX	3608642	intron	AstA-R1 +	chrX	3619727	intron	AstA-R1 +	chrX_6_3605001	chrX_3605001	RAL-101
1164	chrX	3726764	3726786	chrX	3730160	3730163	NOF	4	3392	0.5	1.0	0.8	2.2	3399	chrX	3726764	intron	tlk +	chrX	3728464	intron	tlk +	chrX	3730163	intron	tlk +	chrX_4_3725001	chrX_3725001	RAL-101
1166	chrX	3986865	3986896	chrX	3994498	3994528	412	6	7633	4.0	2.5	3.2	1.4	7663	chrX	3986865	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994528	intergenic	not near genes	chrX_6_3990001	chrX_3990001	RAL-101
1175	chrX	4731815	4731828	chrX	4736907	4736920	jockey	7	5092	6.5	3.5	5.0	1.2	5105	chrX	4731815	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736920	intergenic	not near genes	chrX_7_4730001	chrX_4730001	RAL-101
1177	chrX	4763248	4763284	chrX	4763736	4763772	Stalker4	5	487	2.5	0.5	1.5	2.0	524	chrX	4763248	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763772	intergenic	not near genes	chrX_5_4760001	chrX_4760001	RAL-101
1178	chrX	4792379	4792397	chrX	4792812	4792830	jockey	4	433	3.0	4.5	3.8	0.8	451	chrX	4792379	intergenic	not near genes	chrX	4792604	intergenic	not near genes	chrX	4792830	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-101
1183	chrX	6171587	6171605	chrX	6179019	6179038	Quasimodo	4	7433	3.0	2.5	2.8	1.1	7451	chrX	6171587	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179038	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-101
1185	chrX	6335220	6335238	chrX	6337728	6337748	Tirant	4	2510	0.0	2.5	1.2	1.8	2528	chrX	6335220	intergenic	not near genes	chrX	6336484	intergenic	not near genes	chrX	6337748	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-101
1187	chrX	6392868	6392904	chrX	6397633	6397662	Doc	7	4764	2.0	2.5	2.2	2.2	4794	chrX	6392868	intergenic	not near genes	chrX	6395265	intergenic	not near genes	chrX	6397662	intergenic	not near genes	chrX_7_6395001	chrX_6395001	RAL-101
1189	chrX	6562829	6562845	chrX	6571306	6571326	Tirant	6	8480	0.5	5.0	2.8	1.6	8497	chrX	6562829	intron	CG34417 +	chrX	6567078	intron	CG34417 +	chrX	6571326	intron	CG34417 +	chrX_6_6565001	chrX_6565001	RAL-101
1196	chrX	7023604	7023634	chrX	7030994	7031024	Tabor	10	7390	3.5	4.0	3.8	2.1	7420	chrX	7023604	intron	CG12541 -	chrX	7027314	intron	CG12541 -	chrX	7031024	intron	CG12541 -	chrX_10_7025001	chrX_7025001	RAL-101
1197	chrX	7125262	7125275	chrX	7134421	7134434	roo	4	9159	0.5	4.0	2.2	1.2	9172	chrX	7125262	intergenic	not near genes	chrX	7129848	intergenic	not near genes	chrX	7134434	intergenic	not near genes	chrX_4_7125001	chrX_7125001	RAL-101
1209	chrX	8922334	8922360	chrX	8922768	8922794	jockey	8	434	3.5	2.5	3.0	2.0	460	chrX	8922334	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922794	intron	rdgA +	chrX_8_8920001	chrX_8920001	RAL-101
1212	chrX	9575802	9575824	chrX	9576114	9576148	mdg3	7	322	4.5	3.5	4.0	1.4	346	chrX	9575802	intron,exon	CG32699 -,CG42395 -	chrX	9575975	intron,intron	CG32699 -,CG42395 -	chrX	9576148	intron,5` UTR	CG32699 -,CG42395 -	chrX_7_9575001	chrX_9575001	RAL-101
1216	chrX	10686054	10686076	chrX	10691191	10691213	roo	4	5137	1.5	0.5	1.0	2.0	5159	chrX	10686054	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691213	intron	X11Lbeta +	chrX_4_10685001	chrX_10685001	RAL-101
1221	chrX	11268578	11268596	chrX	11270071	11270075	hopper2	6	1489	2.0	7.5	4.8	1.0	1497	chrX	11268578	intron	CG44422 -	chrX	11269326	intron	CG44422 -	chrX	11270075	intron	CG44422 -	chrX_6_11265001	chrX_11265001	RAL-101
1225	chrX	12168136	12168165	chrX	12173577	12173603	I-element	4	5440	0.5	2.5	1.5	1.6	5467	chrX	12168136	intron	Ten-a +	chrX	12170870	intron	Ten-a +	chrX	12173603	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-101
1234	chrX	14105023	14105055	chrX	14114171	14114201	roo	9	9143	5.0	3.0	4.0	1.8	9178	chrX	14105023	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114201	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	RAL-101
1237	chrX	14636460	14636492	chrX	14641901	14641933	I-element	9	5440	2.0	3.0	2.5	2.6	5473	chrX	14636460	intron	NetA -	chrX	14639196	intron	NetA -	chrX	14641933	intron	NetA -	chrX_9_14635001	chrX_14635001	RAL-101
1239	chrX	14936847	14936893	chrX	14946114	14946150	roo	7	9258	0.0	1.5	0.8	3.9	9303	chrX	14936847	intron	pdgy -	chrX	14941498	intron	pdgy -	chrX	14946150	intron	pdgy -	chrX_7_14940001	chrX_14940001	RAL-101
1240	chrX	15273708	15273737	chrX	15274875	15274904	1360	4	1165	1.0	1.5	1.2	1.8	1196	chrX	15273708	intergenic	not near genes	chrX	15274306	intergenic	not near genes	chrX	15274904	intergenic	not near genes	chrX_4_15270001	chrX_15270001	RAL-101
1241	chrX	15413050	15413085	chrX	15417352	15417387	Juan	9	4301	2.5	1.5	2.0	3.0	4337	chrX	15413050	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417387	intron	Cngl -	chrX_9_15415001	chrX_15415001	RAL-101
1242	chrX	15435694	15435701	chrX	15436127	15436134	rover	4	433	0.0	3.0	1.5	1.6	440	chrX	15435694	intron	Cngl -	chrX	15435914	intron	Cngl -	chrX	15436134	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-101
1246	chrX	16492649	16492678	chrX	16498226	16498255	mdg3	4	5577	2.5	1.0	1.8	1.4	5606	chrX	16492649	intron	para -	chrX	16495452	intron	para -	chrX	16498255	intron	para -	chrX_4_16495001	chrX_16495001	RAL-101
1260	chrX	19380157	19380175	chrX	19380398	19380416	pogo	4	241	3.5	1.5	2.5	1.1	259	chrX	19380157	intron	kek5 +	chrX	19380286	intron	kek5 +	chrX	19380416	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-101
1261	chrX	19472127	19472158	chrX	19472694	19472723	jockey	8	568	1.5	1.0	1.2	3.6	596	chrX	19472127	intergenic	kek5 +	chrX	19472425	intergenic	not near genes	chrX	19472723	intergenic	not near genes	chrX_8_19470001	chrX_19470001	RAL-101
1264	chrX	19710074	19710096	chrX	19711859	19711878	S-element	10	1785	2.5	4.5	3.5	2.2	1804	chrX	19710074	intron	meso18E -	chrX	19710976	intron	meso18E -	chrX	19711878	intron	meso18E -	chrX_10_19710001	chrX_19710001	RAL-101
1273	chrX	20504134	20504157	chrX	20505655	20505678	transib2	8	1521	1.0	6.0	3.5	1.8	1544	chrX	20504134	intron	RhoGAP19D -	chrX	20504906	intron	RhoGAP19D -	chrX	20505678	intron	RhoGAP19D -	chrX_8_20500001	chrX_20500001	RAL-101
1277	chrX	20940717	20940755	chrX	20942186	20942224	hobo	9	1464	3.5	4.0	3.8	1.9	1507	chrX	20940717	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942224	intergenic	not near genes	chrX_9_20940001	chrX_20940001	RAL-101
1279	chrX	21086133	21086160	chrX	21087161	21087189	jockey	7	1027	2.0	1.0	1.5	2.8	1056	chrX	21086133	intergenic	not near genes	chrX	21086661	intergenic	not near genes	chrX	21087189	intergenic	not near genes	chrX_7_21085001	chrX_21085001	RAL-101
1282	chrX	21474405	21474432	chrX	21474771	21474797	1731	8	366	1.0	3.0	2.0	2.7	392	chrX	21474405	intergenic	not near genes	chrX	21474601	intergenic	not near genes	chrX	21474797	intergenic	not near genes	chrX_8_21470001	chrX_21470001	RAL-101
1285	chrX	22681480	22681514	chrX	22688938	22688972	HMS-Beagle2	5	7458	2.5	1.5	2.0	1.7	7492	chrX	22681480	intron	CR44997 +	chrX	22685226	intron	CR44997 +	chrX	22688972	intron	CR44997 +	chrX_5_22685001	chrX_22685001	RAL-101
1288	chrX	22996324	22996340	chrX	23003556	23003572	roo	5	7232	1.5	1.5	1.5	2.0	7248	chrX	22996324	intron,intron	stnA -,stnB -	chrX	22999948	intron,intron	stnA -,stnB -	chrX	23003572	intron,intron	stnA -,stnB -	chrX_5_22995001	chrX_22995001	RAL-101