SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47485 chr2L 52563 52589 jockey 11 5105 4.0 3.5 3.8 2.3 5131 chr2L 47458 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52589 intron Cda5 - chr2L_11_50001 chr2L_50001 RAL-101 2 chr2L 62753 62776 chr2L 62952 62972 5 198 12.5 5.5 9.0 0.5 219 chr2L 62753 intron Cda5 - chr2L 62862 intron Cda5 - chr2L 62972 intron Cda5 - chr2L_5_60001 chr2L_60001 RAL-101 3 chr2L 91188 91200 chr2L 91264 91276 4 76 8.5 10.0 9.2 0.4 88 chr2L 91188 intergenic not near genes chr2L 91232 intergenic not near genes chr2L 91276 intergenic not near genes chr2L_4_90001 chr2L_90001 RAL-101 4 chr2L 127500 127517 chr2L 127595 127612 7 95 9.5 9.0 9.2 0.7 112 chr2L 127500 intron,intron CG11455 +,CG3164 - chr2L 127556 intron,intron CG11455 +,CG3164 - chr2L 127612 intron,intron CG11455 +,CG3164 - chr2L_7_125001 chr2L_125001 RAL-101 5 chr2L 142512 142524 chr2L 142605 142617 5 93 14.5 14.0 14.2 0.3 105 chr2L 142512 intron,5` UTR CG11455 +,CG31974 - chr2L 142564 intron,5` UTR CG11455 +,CG31974 - chr2L 142617 intron,5` UTR CG11455 +,CG31974 - chr2L_5_140001 chr2L_140001 RAL-101 6 chr2L 307818 307841 chr2L 308208 308226 4 385 2.0 6.5 4.2 0.8 408 chr2L 307818 intron Plc21C + chr2L 308022 intron Plc21C + chr2L 308226 intron Plc21C + chr2L_4_305001 chr2L_305001 RAL-101 7 chr2L 314125 314158 chr2L 314202 314235 4 77 4.0 2.5 3.2 1.0 110 chr2L 314125 intron Plc21C + chr2L 314180 intron Plc21C + chr2L 314235 intron Plc21C + chr2L_4_310001 chr2L_310001 RAL-101 8 chr2L 315785 315804 chr2L 315876 315895 6 90 2.5 6.0 4.2 1.2 110 chr2L 315785 intron Plc21C + chr2L 315840 intron Plc21C + chr2L 315895 intron Plc21C + chr2L_6_315001 chr2L_315001 RAL-101 9 chr2L 319908 319929 chr2L 319990 320014 4 84 4.5 5.0 4.8 0.7 106 chr2L 319908 intron Plc21C + chr2L 319961 intron Plc21C + chr2L 320014 intron Plc21C + chr2L_4_315001 chr2L_315001 RAL-101 10 chr2L 325132 325150 chr2L 325209 325227 5 77 6.0 2.5 4.2 1.0 95 chr2L 325132 intron Plc21C + chr2L 325180 intron Plc21C + chr2L 325227 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-101 11 chr2L 347904 347914 chr2L 355404 355414 blood 4 7500 0.5 2.5 1.5 1.6 7510 chr2L 347904 3` UTR Plc21C + chr2L 351659 intron Plc21C + chr2L 355414 3` UTR Plc21C + chr2L_4_350001 chr2L_350001 RAL-101 12 chr2L 630310 630335 chr2L 630402 630422 5 91 1.5 1.5 1.5 2.0 112 chr2L 630310 intergenic not near genes chr2L 630366 intergenic not near genes chr2L 630422 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-101 13 chr2L 666280 666309 chr2L 666356 666385 4 76 10.0 8.5 9.2 0.4 105 chr2L 666280 intron ds - chr2L 666332 intron ds - chr2L 666385 intron ds - chr2L_4_665001 chr2L_665001 RAL-101 14 chr2L 676058 676090 chr2L 676330 676367 5 272 5.5 7.5 6.5 0.7 309 chr2L 676058 intron ds - chr2L 676212 intron ds - chr2L 676367 intron ds - chr2L_5_675001 chr2L_675001 RAL-101 15 chr2L 701365 701395 chr2L 701479 701509 4 114 7.0 5.5 6.2 0.6 144 chr2L 701365 intron ds - chr2L 701437 intron ds - chr2L 701509 intron ds - chr2L_4_700001 chr2L_700001 RAL-101 16 chr2L 763607 763620 chr2L 763683 763696 6 76 9.5 5.0 7.2 0.7 89 chr2L 763607 intergenic not near genes chr2L 763652 intergenic not near genes chr2L 763696 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-101 17 chr2L 764569 764591 chr2L 764650 764672 4 81 4.0 5.0 4.5 0.7 103 chr2L 764569 intergenic not near genes chr2L 764620 intergenic not near genes chr2L 764672 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-101 18 chr2L 770466 770492 chr2L 772246 772273 Bari1 4 1780 4.0 1.5 2.8 1.1 1807 chr2L 770466 intergenic not near genes chr2L 771370 intergenic not near genes chr2L 772273 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-101 19 chr2L 877842 877860 chr2L 877922 877941 11 80 3.5 4.0 3.8 2.3 99 chr2L 877842 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_11_875001 chr2L_875001 RAL-101 20 chr2L 914678 914701 chr2L 914754 914767 5 71 6.0 8.0 7.0 0.6 89 chr2L 914678 intron GluRIIC + chr2L 914722 intron GluRIIC + chr2L 914767 intron GluRIIC + chr2L_5_910001 chr2L_910001 RAL-101 21 chr2L 927858 927872 chr2L 928010 928024 7 152 9.0 10.0 9.5 0.7 166 chr2L 927858 intron CG4341 + chr2L 927941 intron CG4341 + chr2L 928024 intron CG4341 + chr2L_7_925001 chr2L_925001 RAL-101 22 chr2L 976877 976902 chr2L 984513 984515 roo 5 7631 1.0 1.0 1.0 2.5 7638 chr2L 976877 intergenic not near genes chr2L 980696 intergenic not near genes chr2L 984515 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-101 23 chr2L 1035564 1035594 chr2L 1035641 1035671 4 74 4.5 5.5 5.0 0.7 107 chr2L 1035564 intron IA-2 - chr2L 1035618 intron IA-2 - chr2L 1035671 intron IA-2 - chr2L_4_1035001 chr2L_1035001 RAL-101 24 chr2L 1039229 1039249 chr2L 1039311 1039334 7 83 6.0 5.0 5.5 1.1 105 chr2L 1039229 intron IA-2 - chr2L 1039282 intron IA-2 - chr2L 1039334 intron IA-2 - chr2L_7_1035001 chr2L_1035001 RAL-101 25 chr2L 1100389 1100404 chr2L 1100506 1100519 5 117 6.5 9.5 8.0 0.6 130 chr2L 1100389 intron CG4629 - chr2L 1100454 intron CG4629 - chr2L 1100519 intron CG4629 - chr2L_5_1100001 chr2L_1100001 RAL-101 26 chr2L 1220130 1220161 chr2L 1227594 1227627 blood 9 7465 2.5 3.0 2.8 2.4 7497 chr2L 1220130 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-101 27 chr2L 1263255 1263281 chr2L 1263725 1263751 7 469 6.0 6.5 6.2 1.0 496 chr2L 1263255 intron robo3 + chr2L 1263503 intron robo3 + chr2L 1263751 intron robo3 + chr2L_7_1260001 chr2L_1260001 RAL-101 28 chr2L 1332207 1332239 chr2L 1332283 1332316 9 73 10.5 12.5 11.5 0.7 109 chr2L 1332207 intergenic not near genes chr2L 1332262 intergenic not near genes chr2L 1332316 intergenic not near genes chr2L_9_1330001 chr2L_1330001 RAL-101 29 chr2L 1481446 1481474 chr2L 1481531 1481556 4 84 3.0 4.5 3.8 0.8 110 chr2L 1481446 intergenic not near genes chr2L 1481501 intergenic not near genes chr2L 1481556 intergenic not near genes chr2L_4_1480001 chr2L_1480001 RAL-101 30 chr2L 1508061 1508271 chr2L 1508144 1508352 6 84 6.5 4.5 5.5 0.9 291 chr2L 1508061 intergenic not near genes chr2L 1508206 intergenic not near genes chr2L 1508352 intergenic not near genes chr2L_6_1505001 chr2L_1505001 RAL-101 31 chr2L 1536502 1536517 chr2L 1536634 1536649 4 132 0.0 5.5 2.8 1.1 147 chr2L 1536502 intergenic not near genes chr2L 1536576 intergenic not near genes chr2L 1536649 intergenic not near genes chr2L_4_1535001 chr2L_1535001 RAL-101 32 chr2L 1570701 1570713 chr2L 1573571 1573585 F-element 4 2871 5.0 4.5 4.8 0.7 2884 chr2L 1570701 intron haf + chr2L 1572143 intron haf + chr2L 1573585 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-101 33 chr2L 1590968 1590989 chr2L 1591044 1591060 6 75 11.5 10.5 11.0 0.5 92 chr2L 1590968 intron haf + chr2L 1591014 intron haf + chr2L 1591060 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-101 34 chr2L 1711355 1711389 chr2L 1711679 1711700 mdg3 8 320 2.5 5.0 3.8 1.7 345 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711700 3` UTR frtz - chr2L_8_1710001 chr2L_1710001 RAL-101 35 chr2L 2075519 2075539 chr2L 2075619 2075635 5 99 11.0 10.5 10.8 0.4 116 chr2L 2075519 intron dpr3 - chr2L 2075577 intron dpr3 - chr2L 2075635 intron dpr3 - chr2L_5_2075001 chr2L_2075001 RAL-101 36 chr2L 2100383 2100406 chr2L 2109534 2109549 roo 8 9149 2.0 5.5 3.8 1.7 9166 chr2L 2100383 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109549 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-101 37 chr2L 2112113 2112145 chr2L 2119775 2119802 opus 4 7656 1.5 4.0 2.8 1.1 7689 chr2L 2112113 intergenic not near genes chr2L 2115958 intergenic not near genes chr2L 2119802 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-101 38 chr2L 2207667 2207699 chr2L 2207748 2207761 5 75 5.0 8.5 6.8 0.6 94 chr2L 2207667 exon CG33124 - chr2L 2207714 exon CG33124 - chr2L 2207761 exon CG33124 - chr2L_5_2205001 chr2L_2205001 RAL-101 39 chr2L 2260810 2260835 chr2L 2260896 2260921 4 86 6.0 7.5 6.8 0.5 111 chr2L 2260810 intergenic not near genes chr2L 2260866 intergenic not near genes chr2L 2260921 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-101 40 chr2L 2262306 2262326 chr2L 2262383 2262403 4 77 6.0 0.0 3.0 1.0 97 chr2L 2262306 intergenic not near genes chr2L 2262354 intergenic not near genes chr2L 2262403 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-101 41 chr2L 2330876 2330903 chr2L 2330965 2330992 8 89 1.5 7.0 4.2 1.5 116 chr2L 2330876 intron,intron CG9967 -,eys + chr2L 2330934 intron,intron CG9967 -,eys + chr2L 2330992 intron,intron CG9967 -,eys + chr2L_8_2330001 chr2L_2330001 RAL-101 42 chr2L 2503554 2503566 chr2L 2503650 2503654 4 94 12.5 8.0 10.2 0.4 100 chr2L 2503554 intergenic not near genes chr2L 2503604 intergenic not near genes chr2L 2503654 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-101 43 chr2L 2552736 2552765 chr2L 2552815 2552845 4 80 7.5 4.0 5.8 0.6 109 chr2L 2552736 exon CG3515 - chr2L 2552790 5` UTR CG3515 - chr2L 2552845 intergenic CG3515 - chr2L_4_2550001 chr2L_2550001 RAL-101 44 chr2L 2565550 2565562 chr2L 2571618 2571630 297 5 6068 3.0 3.5 3.2 1.2 6080 chr2L 2565550 exon Cyp309a2 - chr2L 2568590 intron Cyp309a2 - chr2L 2571630 intron Cyp309a2 - chr2L_5_2565001 chr2L_2565001 RAL-101 45 chr2L 2587814 2587846 chr2L 2587893 2587924 4 78 6.5 6.0 6.2 0.6 110 chr2L 2587814 intergenic not near genes chr2L 2587869 intergenic not near genes chr2L 2587924 intergenic not near genes chr2L_4_2585001 chr2L_2585001 RAL-101 46 chr2L 2618034 2618062 chr2L 2618113 2618141 4 79 10.5 6.0 8.2 0.4 107 chr2L 2618034 intergenic not near genes chr2L 2618088 intergenic not near genes chr2L 2618141 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-101 47 chr2L 2713522 2713532 chr2L 2713621 2713631 5 98 9.0 5.0 7.0 0.6 109 chr2L 2713522 intron CG31690 + chr2L 2713576 intron CG31690 + chr2L 2713631 intron CG31690 + chr2L_5_2710001 chr2L_2710001 RAL-101 48 chr2L 2933292 2933319 chr2L 2935479 2935506 pogo 7 2184 6.0 5.5 5.8 1.0 2214 chr2L 2933292 intron lilli + chr2L 2934399 intron lilli + chr2L 2935506 intron lilli + chr2L_7_2930001 chr2L_2930001 RAL-101 49 chr2L 2977371 2977387 chr2L 2977461 2977481 6 95 7.5 9.0 8.2 0.7 110 chr2L 2977371 exon CG3165 + chr2L 2977426 exon CG3165 + chr2L 2977481 exon CG3165 + chr2L_6_2975001 chr2L_2975001 RAL-101 50 chr2L 3147285 3147301 chr2L 3147355 3147375 5 74 10.5 12.5 11.5 0.4 90 chr2L 3147285 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147375 3` UTR Mad - chr2L_5_3145001 chr2L_3145001 RAL-101 51 chr2L 3171189 3171214 chr2L 3171493 3171518 4 304 8.0 7.5 7.8 0.5 329 chr2L 3171189 intergenic CG44002 - chr2L 3171354 intergenic CG44002 - chr2L 3171518 intergenic CG44002 - chr2L_4_3170001 chr2L_3170001 RAL-101 52 chr2L 3291241 3291267 chr2L 3291321 3291337 6 78 1.0 3.5 2.2 1.9 96 chr2L 3291241 intergenic CG9664 - chr2L 3291289 3` UTR CG9664 - chr2L 3291337 3` UTR CG9664 - chr2L_6_3290001 chr2L_3290001 RAL-101 53 chr2L 3475772 3475793 chr2L 3475867 3475888 6 94 8.5 6.5 7.5 0.7 116 chr2L 3475772 5` UTR CR45372 + chr2L 3475830 5` UTR CR45372 + chr2L 3475888 5` UTR CR45372 + chr2L_6_3475001 chr2L_3475001 RAL-101 54 chr2L 3508360 3508458 chr2L 3508438 3508510 6 71 5.0 4.0 4.5 1.1 150 chr2L 3508360 intergenic CR45299 +,tim - chr2L 3508435 intergenic CR45299 +,tim - chr2L 3508510 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-101 55 chr2L 3523038 3523043 chr2L 3523149 3523156 4 112 6.0 5.0 5.5 0.6 118 chr2L 3523038 exon Sr-CIV - chr2L 3523097 intron Sr-CIV - chr2L 3523156 exon Sr-CIV - chr2L_4_3520001 chr2L_3520001 RAL-101 56 chr2L 3582879 3582911 chr2L 3582956 3582988 7 76 0.5 2.5 1.5 2.8 109 chr2L 3582879 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_7_3580001 chr2L_3580001 RAL-101 57 chr2L 3663309 3663337 chr2L 3663388 3663416 4 79 3.0 8.5 5.8 0.6 107 chr2L 3663309 intron CG34340 + chr2L 3663362 intron CG34340 + chr2L 3663416 intron CG34340 + chr2L_4_3660001 chr2L_3660001 RAL-101 58 chr2L 3819032 3819052 chr2L 3819114 3819134 4 82 6.5 2.5 4.5 0.7 102 chr2L 3819032 intergenic CR44077 + chr2L 3819083 intergenic not near genes chr2L 3819134 intergenic not near genes chr2L_4_3815001 chr2L_3815001 RAL-101 59 chr2L 3943792 3943823 chr2L 3943883 3943914 4 91 1.0 1.0 1.0 2.0 122 chr2L 3943792 intron fred - chr2L 3943853 intron fred - chr2L 3943914 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-101 60 chr2L 3992500 3992526 chr2L 3992669 3992695 5 167 5.0 4.5 4.8 0.9 195 chr2L 3992500 intergenic not near genes chr2L 3992598 intergenic not near genes chr2L 3992695 intergenic not near genes chr2L_5_3990001 chr2L_3990001 RAL-101 61 chr2L 4008276 4008301 chr2L 4008361 4008386 4 85 4.0 8.5 6.2 0.6 110 chr2L 4008276 intergenic CG43773 +,CG43774 + chr2L 4008331 intergenic CG43774 +,CG43773 + chr2L 4008386 intergenic CG43774 +,CG43773 + chr2L_4_4005001 chr2L_4005001 RAL-101 62 chr2L 4066046 4066062 chr2L 4068871 4068887 Juan 5 2825 2.5 3.5 3.0 1.2 2841 chr2L 4066046 intron ed + chr2L 4067466 intron ed + chr2L 4068887 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-101 63 chr2L 4150647 4150651 chr2L 4150726 4150730 4 79 0.0 0.5 0.2 3.3 83 chr2L 4150647 exon CG2955 + chr2L 4150688 exon CG2955 + chr2L 4150730 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-101 64 chr2L 4222198 4222211 chr2L 4222285 4222294 4 86 4.5 5.5 5.0 0.7 96 chr2L 4222198 intergenic ft - chr2L 4222246 intergenic ft - chr2L 4222294 intergenic ft - chr2L_4_4220001 chr2L_4220001 RAL-101 65 chr2L 4317884 4317901 chr2L 4317961 4317979 4 75 7.5 8.5 8.0 0.4 95 chr2L 4317884 intron tutl + chr2L 4317932 intron tutl + chr2L 4317979 intron tutl + chr2L_4_4315001 chr2L_4315001 RAL-101 66 chr2L 4351487 4351494 chr2L 4351558 4351570 4 73 9.5 10.0 9.8 0.4 83 chr2L 4351487 intergenic CR44700 + chr2L 4351528 intergenic CR44700 + chr2L 4351570 intergenic CR44700 + chr2L_4_4350001 chr2L_4350001 RAL-101 67 chr2L 4477133 4477163 chr2L 4477326 4477356 4 200 17.0 12.0 14.5 0.3 223 chr2L 4477133 intergenic ine -,dp - chr2L 4477244 intergenic dp -,ine - chr2L 4477356 intergenic dp -,ine - chr2L_4_4475001 chr2L_4475001 RAL-101 68 chr2L 4601702 4601735 chr2L 4609143 4609176 mdg1 7 7441 3.0 4.0 3.5 1.6 7474 chr2L 4601702 intron dp - chr2L 4605439 intron dp - chr2L 4609176 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-101 69 chr2L 4672077 4672109 chr2L 4672154 4672186 6 77 7.5 7.5 7.5 0.7 109 chr2L 4672077 intergenic not near genes chr2L 4672132 intergenic not near genes chr2L 4672186 intergenic not near genes chr2L_6_4670001 chr2L_4670001 RAL-101 70 chr2L 4702808 4702819 chr2L 4702891 4702898 4 80 4.0 4.0 4.0 0.8 90 chr2L 4702808 intron CG34351 + chr2L 4702853 intron CG34351 + chr2L 4702898 intron CG34351 + chr2L_4_4700001 chr2L_4700001 RAL-101 71 chr2L 4770109 4770130 chr2L 4770191 4770213 4 83 8.5 5.0 6.8 0.5 104 chr2L 4770109 intron CG15630 - chr2L 4770161 intron CG15630 - chr2L 4770213 intron CG15630 - chr2L_4_4770001 chr2L_4770001 RAL-101 72 chr2L 4784053 4784065 chr2L 4784155 4784167 5 101 7.0 5.0 6.0 0.7 114 chr2L 4784053 intron CG15630 - chr2L 4784110 intron CG15630 - chr2L 4784167 intron CG15630 - chr2L_5_4780001 chr2L_4780001 RAL-101 73 chr2L 4841073 4841100 chr2L 4841149 4841176 4 76 10.0 10.5 10.2 0.4 103 chr2L 4841073 intron CG12194 + chr2L 4841124 intron CG12194 + chr2L 4841176 exon CG12194 + chr2L_4_4840001 chr2L_4840001 RAL-101 74 chr2L 4858471 4858473 chr2L 4858559 4858561 4 94 1.0 1.5 1.2 1.8 90 chr2L 4858471 intron pog + chr2L 4858516 intron pog + chr2L 4858561 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-101 75 chr2L 4953515 4953543 chr2L 4953756 4953784 pogo 8 241 3.5 1.0 2.2 2.5 269 chr2L 4953515 intergenic Jon25Bii - chr2L 4953650 intergenic not near genes chr2L 4953784 intergenic Jon25Bi - chr2L_8_4950001 chr2L_4950001 RAL-101 76 chr2L 5258784 5258789 chr2L 5258840 5258867 4 72 5.0 4.0 4.5 0.7 83 chr2L 5258784 intron tkv - chr2L 5258826 intron tkv - chr2L 5258867 intron tkv - chr2L_4_5255001 chr2L_5255001 RAL-101 77 chr2L 5381841 5381857 chr2L 5381925 5381936 5 83 1.5 2.5 2.0 1.7 95 chr2L 5381841 intergenic not near genes chr2L 5381888 intergenic not near genes chr2L 5381936 intergenic not near genes chr2L_5_5380001 chr2L_5380001 RAL-101 78 chr2L 5640041 5640052 chr2L 5640268 5640288 5 229 21.0 22.0 21.5 0.2 247 chr2L 5640041 intron CG31646 - chr2L 5640164 intron CG31646 - chr2L 5640288 exon CG31646 - chr2L_5_5640001 chr2L_5640001 RAL-101 79 chr2L 5732793 5732814 chr2L 5732880 5732901 5 86 1.0 0.0 0.5 3.3 108 chr2L 5732793 intron CG11030 + chr2L 5732847 intron CG11030 + chr2L 5732901 intron CG11030 + chr2L_5_5730001 chr2L_5730001 RAL-101 80 chr2L 5749508 5749524 chr2L 5749706 5749722 6 198 4.0 10.5 7.2 0.7 214 chr2L 5749508 intron CG11030 + chr2L 5749615 intron CG11030 + chr2L 5749722 intron CG11030 + chr2L_6_5745001 chr2L_5745001 RAL-101 81 chr2L 5827710 5827740 chr2L 5836718 5836746 roo 12 9008 2.5 4.5 3.5 2.7 9036 chr2L 5827710 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836746 intron TrissinR + chr2L_12_5830001 chr2L_5830001 RAL-101 82 chr2L 5853716 5853746 chr2L 5853801 5853831 6 83 7.0 5.0 6.0 0.9 115 chr2L 5853716 intron TrissinR + chr2L 5853774 intron TrissinR + chr2L 5853831 intron TrissinR + chr2L_6_5850001 chr2L_5850001 RAL-101 83 chr2L 5897593 5897623 chr2L 5897676 5897693 11 81 5.5 10.5 8.0 1.2 100 chr2L 5897593 intergenic not near genes chr2L 5897643 intergenic not near genes chr2L 5897693 intergenic not near genes chr2L_11_5895001 chr2L_5895001 RAL-101 84 chr2L 5993335 5993360 chr2L 5993426 5993450 5 90 4.5 3.0 3.8 1.0 115 chr2L 5993335 exon lid - chr2L 5993392 intron lid - chr2L 5993450 intron lid - chr2L_5_5990001 chr2L_5990001 RAL-101 85 chr2L 6020211 6020240 chr2L 6020295 6020321 5 81 8.0 4.0 6.0 0.7 110 chr2L 6020211 intergenic not near genes chr2L 6020266 intergenic not near genes chr2L 6020321 intergenic not near genes chr2L_5_6020001 chr2L_6020001 RAL-101 86 chr2L 6185447 6185459 chr2L 6185525 6185535 5 77 6.5 4.5 5.5 0.8 88 chr2L 6185447 intron CG34380 + chr2L 6185491 intron CG34380 + chr2L 6185535 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-101 87 chr2L 6246903 6246932 chr2L 6246992 6247021 5 88 5.5 6.0 5.8 0.7 118 chr2L 6246903 intergenic not near genes chr2L 6246962 intergenic not near genes chr2L 6247021 intergenic not near genes chr2L_5_6245001 chr2L_6245001 RAL-101 88 chr2L 6283942 6283973 chr2L 6284053 6284084 4 111 4.5 5.0 4.8 0.7 142 chr2L 6283942 intron Ddr + chr2L 6284013 intron Ddr + chr2L 6284084 intron Ddr + chr2L_4_6280001 chr2L_6280001 RAL-101 89 chr2L 6361201 6361223 chr2L 6361287 6361309 6 86 5.0 4.5 4.8 1.0 108 chr2L 6361201 5` UTR CR44778 + chr2L 6361255 5` UTR CR44778 + chr2L 6361309 5` UTR CR44778 + chr2L_6_6360001 chr2L_6360001 RAL-101 90 chr2L 6371688 6371706 chr2L 6371766 6371784 4 76 5.0 4.0 4.5 0.7 96 chr2L 6371688 intergenic not near genes chr2L 6371736 intergenic not near genes chr2L 6371784 intergenic not near genes chr2L_4_6370001 chr2L_6370001 RAL-101 91 chr2L 6380254 6380275 chr2L 6380345 6380354 5 87 11.0 6.5 8.8 0.5 100 chr2L 6380254 intron CG42368 - chr2L 6380304 intron CG42368 - chr2L 6380354 intron CG42368 - chr2L_5_6380001 chr2L_6380001 RAL-101 92 chr2L 6426856 6426888 chr2L 6445116 6445146 roo 7 18260 1.5 4.5 3.0 1.8 18290 chr2L 6426856 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445146 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-101 93 chr2L 6522942 6522967 chr2L 6523024 6523044 4 78 5.5 7.0 6.2 0.6 102 chr2L 6522942 intron CG31637 + chr2L 6522993 intron CG31637 + chr2L 6523044 intron CG31637 + chr2L_4_6520001 chr2L_6520001 RAL-101 94 chr2L 6600061 6600082 chr2L 6600180 6600205 7 122 7.5 7.0 7.2 0.9 144 chr2L 6600061 intron CG11319 - chr2L 6600133 intron CG11319 - chr2L 6600205 intron CG11319 - chr2L_7_6600001 chr2L_6600001 RAL-101 95 chr2L 6740743 6740758 chr2L 6740829 6740845 4 87 2.0 4.0 3.0 1.0 102 chr2L 6740743 intergenic not near genes chr2L 6740794 intergenic not near genes chr2L 6740845 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-101 96 chr2L 6876775 6876806 chr2L 6882965 6882997 diver 4 6189 3.0 3.5 3.2 1.0 6222 chr2L 6876775 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882997 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-101 97 chr2L 6969278 6969304 chr2L 6969358 6969384 6 78 9.0 11.5 10.2 0.5 106 chr2L 6969278 3` UTR snRNP-U1-70K - chr2L 6969331 3` UTR snRNP-U1-70K - chr2L 6969384 3` UTR snRNP-U1-70K - chr2L_6_6965001 chr2L_6965001 RAL-101 98 chr2L 7197997 7198019 chr2L 7198076 7198095 4 78 1.5 0.5 1.0 2.0 98 chr2L 7197997 intron CG4502 - chr2L 7198046 intron CG4502 - chr2L 7198095 intron CG4502 - chr2L_4_7195001 chr2L_7195001 RAL-101 99 chr2L 7343326 7343355 chr2L 7350441 7350471 roo 5 7114 3.0 2.0 2.5 1.4 7145 chr2L 7343326 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-101 100 chr2L 7520696 7520720 chr2L 7520816 7520840 6 120 4.5 5.5 5.0 1.0 144 chr2L 7520696 intron RapGAP1 - chr2L 7520768 intron RapGAP1 - chr2L 7520840 intron RapGAP1 - chr2L_6_7520001 chr2L_7520001 RAL-101 101 chr2L 7652785 7653072 chr2L 7652869 7653166 8 90 6.5 11.5 9.0 0.8 381 chr2L 7652785 intron Slob - chr2L 7652976 intron Slob - chr2L 7653166 intron Slob - chr2L_8_7650001 chr2L_7650001 RAL-101 102 chr2L 7922747 7922770 chr2L 7922828 7922851 8 81 2.5 4.0 3.2 1.9 104 chr2L 7922747 intron Snoo - chr2L 7922799 intron Snoo - chr2L 7922851 intron Snoo - chr2L_8_7920001 chr2L_7920001 RAL-101 103 chr2L 7959041 7959053 chr2L 7960451 7960464 pogo 5 1411 8.0 2.5 5.2 0.8 1423 chr2L 7959041 intron Snoo - chr2L 7959752 intron Snoo - chr2L 7960464 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-101 104 chr2L 7977092 7977108 chr2L 7984067 7984084 297 6 6972 3.0 1.0 2.0 2.0 6992 chr2L 7977092 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984084 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-101 105 chr2L 8044107 8044131 chr2L 8044186 8044208 7 78 1.5 4.0 2.8 1.8 101 chr2L 8044107 intron CG7466 + chr2L 8044158 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_7_8040001 chr2L_8040001 RAL-101 106 chr2L 8128057 8128060 chr2L 8128113 8128144 6 74 6.5 5.5 6.0 0.9 87 chr2L 8128057 intron CG8668 + chr2L 8128100 intron CG8668 + chr2L 8128144 intron CG8668 + chr2L_6_8125001 chr2L_8125001 RAL-101 107 chr2L 8184921 8184954 chr2L 8185012 8185045 5 90 5.0 7.5 6.2 0.7 124 chr2L 8184921 intron Piezo + chr2L 8184983 intron Piezo + chr2L 8185045 intron Piezo + chr2L_5_8180001 chr2L_8180001 RAL-101 108 chr2L 8336524 8336548 chr2L 8336609 8336631 8 85 6.5 9.0 7.8 0.9 107 chr2L 8336524 intergenic not near genes chr2L 8336578 intergenic not near genes chr2L 8336631 intergenic not near genes chr2L_8_8335001 chr2L_8335001 RAL-101 109 chr2L 8349609 8349623 chr2L 8349714 8349728 5 105 5.0 3.0 4.0 1.0 119 chr2L 8349609 exon CG7778 + chr2L 8349668 intron CG7778 + chr2L 8349728 intron CG7778 + chr2L_5_8345001 chr2L_8345001 RAL-101 110 chr2L 8400514 8400533 chr2L 8400619 8400638 4 105 4.5 11.0 7.8 0.5 124 chr2L 8400514 exon CG31898 + chr2L 8400576 exon CG31898 + chr2L 8400638 exon CG31898 + chr2L_4_8400001 chr2L_8400001 RAL-101 111 chr2L 8700711 8700731 chr2L 8700808 8700827 4 95 5.0 2.0 3.5 0.9 116 chr2L 8700711 intron Hnf4 - chr2L 8700769 intron Hnf4 - chr2L 8700827 intron Hnf4 - chr2L_4_8700001 chr2L_8700001 RAL-101 112 chr2L 8723113 8723133 chr2L 8731490 8731508 Tirant 6 8377 1.5 1.0 1.2 2.7 8395 chr2L 8723113 intron raw - chr2L 8727310 intron raw - chr2L 8731508 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-101 113 chr2L 8809161 8809163 chr2L 8809239 8809241 4 78 9.5 7.5 8.5 0.4 80 chr2L 8809161 intergenic not near genes chr2L 8809201 intergenic not near genes chr2L 8809241 intergenic not near genes chr2L_4_8805001 chr2L_8805001 RAL-101 114 chr2L 9000282 9000302 chr2L 9007792 9007812 roo 10 7509 3.0 0.5 1.8 3.6 7530 chr2L 9000282 intergenic Try29F + chr2L 9004047 intergenic not near genes chr2L 9007812 intergenic not near genes chr2L_10_9000001 chr2L_9000001 RAL-101 115 chr2L 9084336 9084340 chr2L 16217660 16217660 15 7133322 13.5 14.0 13.8 1.0 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-101 116 chr2L 9156567 9156710 chr2L 9156628 9156788 5 70 5.5 4.5 5.0 0.8 221 chr2L 9156567 exon CG32982 + chr2L 9156678 intron CG32982 + chr2L 9156788 intron CG32982 + chr2L_5_9155001 chr2L_9155001 RAL-101 117 chr2L 9297383 9297403 chr2L 9297460 9297480 5 77 1.5 6.0 3.8 1.0 97 chr2L 9297383 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297480 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-101 118 chr2L 9303368 9303486 chr2L 9303469 9303562 4 83 6.5 3.5 5.0 0.7 194 chr2L 9303368 intergenic not near genes chr2L 9303465 intergenic not near genes chr2L 9303562 intergenic not near genes chr2L_4_9300001 chr2L_9300001 RAL-101 119 chr2L 9393501 9393528 chr2L 9396468 9396495 jockey 6 2966 2.0 2.0 2.0 2.0 2994 chr2L 9393501 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396495 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-101 120 chr2L 9456937 9456950 chr2L 9457018 9457031 6 81 2.5 7.5 5.0 1.0 94 chr2L 9456937 intron numb + chr2L 9456984 intron numb + chr2L 9457031 intron numb + chr2L_6_9455001 chr2L_9455001 RAL-101 121 chr2L 9490525 9490550 chr2L 9490603 9490628 9 77 2.5 4.5 3.5 2.0 103 chr2L 9490525 intergenic not near genes chr2L 9490576 intergenic not near genes chr2L 9490628 intergenic not near genes chr2L_9_9490001 chr2L_9490001 RAL-101 122 chr2L 9526857 9526868 chr2L 9526949 9526960 5 91 4.5 7.0 5.8 0.7 103 chr2L 9526857 intron Oatp30B + chr2L 9526908 intron Oatp30B + chr2L 9526960 intron Oatp30B + chr2L_5_9525001 chr2L_9525001 RAL-101 123 chr2L 9610113 9610144 chr2L 9610191 9610223 5 79 5.0 5.5 5.2 0.8 110 chr2L 9610113 intron gcm2 + chr2L 9610168 intron gcm2 + chr2L 9610223 intron gcm2 + chr2L_5_9610001 chr2L_9610001 RAL-101 124 chr2L 9892502 9892530 chr2L 9892578 9892606 6 76 3.0 2.0 2.5 1.7 104 chr2L 9892502 intron mtDNA-helicase - chr2L 9892554 intron mtDNA-helicase - chr2L 9892606 intron mtDNA-helicase - chr2L_6_9890001 chr2L_9890001 RAL-101 125 chr2L 9973726 9973756 chr2L 9980845 9980875 HMS-Beagle 12 7117 3.0 6.5 4.8 2.1 7149 chr2L 9973726 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_12_9975001 chr2L_9975001 RAL-101 126 chr2L 10023080 10023092 chr2L 10023165 10023177 4 85 6.5 3.5 5.0 0.7 97 chr2L 10023080 intergenic not near genes chr2L 10023128 intergenic not near genes chr2L 10023177 intergenic not near genes chr2L_4_10020001 chr2L_10020001 RAL-101 127 chr2L 10045419 10045427 chr2L 10045499 10045504 4 79 4.5 7.5 6.0 0.6 85 chr2L 10045419 intergenic not near genes chr2L 10045462 intergenic not near genes chr2L 10045504 intergenic not near genes chr2L_4_10045001 chr2L_10045001 RAL-101 128 chr2L 10133059 10133081 chr2L 10133138 10133162 5 80 2.0 3.5 2.8 1.3 103 chr2L 10133059 intron CG44153 - chr2L 10133110 intron CG44153 - chr2L 10133162 intron CG44153 - chr2L_5_10130001 chr2L_10130001 RAL-101 129 chr2L 10156324 10156355 chr2L 10163792 10163823 blood 6 7469 4.0 3.0 3.5 1.3 7499 chr2L 10156324 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163823 intron CG44153 - chr2L_6_10160001 chr2L_10160001 RAL-101 130 chr2L 10175897 10175923 chr2L 10175994 10176019 4 96 7.0 10.5 8.8 0.4 122 chr2L 10175897 intron CG44153 - chr2L 10175958 intron CG44153 - chr2L 10176019 intron CG44153 - chr2L_4_10175001 chr2L_10175001 RAL-101 131 chr2L 10592847 10592869 chr2L 10600509 10600531 opus 5 7661 0.5 1.5 1.0 2.5 7684 chr2L 10592847 intron Trim9 + chr2L 10596689 intron Trim9 + chr2L 10600531 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-101 132 chr2L 10640641 10640671 chr2L 10640730 10640760 13 88 5.0 4.0 4.5 2.4 119 chr2L 10640641 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_13_10640001 chr2L_10640001 RAL-101 133 chr2L 10647598 10647610 chr2L 10647723 10647731 4 124 10.5 24.5 17.5 0.2 133 chr2L 10647598 exon CG17097 + chr2L 10647664 exon CG17097 + chr2L 10647731 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-101 134 chr2L 10707679 10707696 chr2L 10707759 10707776 4 80 0.0 1.0 0.5 2.7 97 chr2L 10707679 intron Lip2 - chr2L 10707728 intron Lip2 - chr2L 10707776 intron Lip2 - chr2L_4_10705001 chr2L_10705001 RAL-101 135 chr2L 10849640 10849668 chr2L 10849913 10849940 5 271 6.5 5.5 6.0 0.7 300 chr2L 10849640 5` UTR porin - chr2L 10849790 5` UTR porin - chr2L 10849940 5` UTR porin - chr2L_5_10845001 chr2L_10845001 RAL-101 136 chr2L 10862851 10862868 chr2L 10864461 10864482 Rt1c 8 1611 5.0 4.0 4.5 1.5 1631 chr2L 10862851 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864482 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-101 137 chr2L 10946959 10946977 chr2L 10956173 10956192 roo 13 9214 3.0 4.0 3.5 2.9 9233 chr2L 10946959 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_13_10950001 chr2L_10950001 RAL-101 138 chr2L 10986989 10987017 chr2L 10988285 10988313 7 1297 8.0 13.5 10.8 0.6 1324 chr2L 10986989 intron piwi - chr2L 10987651 intergenic CG12253 +,piwi - chr2L 10988313 exon CG12253 + chr2L_7_10985001 chr2L_10985001 RAL-101 139 chr2L 11292374 11292408 chr2L 11292456 11292490 6 82 1.0 2.0 1.5 2.4 116 chr2L 11292374 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_6_11290001 chr2L_11290001 RAL-101 140 chr2L 11418662 11418682 chr2L 11418740 11418761 7 78 3.5 4.5 4.0 1.4 99 chr2L 11418662 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418761 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-101 141 chr2L 11453139 11453153 chr2L 11453252 11453253 5 110 6.0 6.0 6.0 0.7 114 chr2L 11453139 intergenic not near genes chr2L 11453196 intergenic not near genes chr2L 11453253 intergenic not near genes chr2L_5_11450001 chr2L_11450001 RAL-101 142 chr2L 11614077 11614085 chr2L 11615552 11615557 hopper2 5 1483 3.0 2.5 2.8 1.3 1480 chr2L 11614077 intron kek2 + chr2L 11614817 intron kek2 + chr2L 11615557 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-101 143 chr2L 11713511 11713540 chr2L 11720975 11721008 blood 9 7467 2.0 3.0 2.5 2.6 7497 chr2L 11713511 intergenic not near genes chr2L 11717260 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-101 144 chr2L 11752873 11752880 chr2L 11753161 11753166 4 288 4.5 2.0 3.2 1.0 293 chr2L 11752873 intergenic CG42470 - chr2L 11753020 3` UTR CG42470 - chr2L 11753166 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-101 145 chr2L 11821466 11821486 chr2L 11821566 11821585 4 100 9.0 8.5 8.8 0.4 119 chr2L 11821466 intron Pde1c - chr2L 11821526 intron Pde1c - chr2L 11821585 intron Pde1c - chr2L_4_11820001 chr2L_11820001 RAL-101 146 chr2L 11828455 11828528 chr2L 11828530 11828697 7 156 1.5 2.5 2.0 2.3 242 chr2L 11828455 intron,intron Pde1c -,esc - chr2L 11828576 intron,intron Pde1c -,esc - chr2L 11828697 intron,intron Pde1c -,esc - chr2L_7_11825001 chr2L_11825001 RAL-101 147 chr2L 11892793 11892813 chr2L 11892885 11892905 4 92 8.5 9.5 9.0 0.4 112 chr2L 11892793 intron Pde1c - chr2L 11892849 intron Pde1c - chr2L 11892905 intron Pde1c - chr2L_4_11890001 chr2L_11890001 RAL-101 148 chr2L 11925599 11925626 chr2L 11925688 11925715 4 88 6.0 8.0 7.0 0.5 116 chr2L 11925599 5` UTR Pde1c - chr2L 11925657 5` UTR Pde1c - chr2L 11925715 5` UTR Pde1c - chr2L_4_11925001 chr2L_11925001 RAL-101 149 chr2L 12121621 12121632 chr2L 12121713 12121725 6 92 7.5 5.0 6.2 0.8 104 chr2L 12121621 intron CG17211 + chr2L 12121673 intron CG17211 + chr2L 12121725 intron CG17211 + chr2L_6_12120001 chr2L_12120001 RAL-101 150 chr2L 12239078 12239085 chr2L 12239166 12239173 4 88 2.0 6.5 4.2 0.8 95 chr2L 12239078 intron aret + chr2L 12239126 intron aret + chr2L 12239173 intron aret + chr2L_4_12235001 chr2L_12235001 RAL-101 151 chr2L 12327007 12327039 chr2L 12327093 12327123 6 86 7.5 6.5 7.0 0.8 116 chr2L 12327007 intergenic not near genes chr2L 12327065 intergenic not near genes chr2L 12327123 intergenic not near genes chr2L_6_12325001 chr2L_12325001 RAL-101 152 chr2L 12341539 12341557 chr2L 12341644 12341661 4 104 6.5 5.5 6.0 0.6 122 chr2L 12341539 intergenic not near genes chr2L 12341600 intergenic not near genes chr2L 12341661 intergenic not near genes chr2L_4_12340001 chr2L_12340001 RAL-101 153 chr2L 12349635 12349656 chr2L 12349729 12349749 4 94 6.5 2.0 4.2 0.8 114 chr2L 12349635 intron bru-2 + chr2L 12349692 intron bru-2 + chr2L 12349749 intron bru-2 + chr2L_4_12345001 chr2L_12345001 RAL-101 154 chr2L 12558323 12558342 chr2L 12565452 12565470 HMS-Beagle 5 7128 0.0 1.0 0.5 3.3 7147 chr2L 12558323 intergenic not near genes chr2L 12561896 intergenic not near genes chr2L 12565470 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-101 155 chr2L 12693842 12693873 chr2L 12693919 12693950 6 77 4.0 3.5 3.8 1.2 108 chr2L 12693842 exon CG6153 + chr2L 12693896 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693950 3` UTR CG5780 - chr2L_6_12690001 chr2L_12690001 RAL-101 156 chr2L 12759207 12759236 chr2L 12759302 12759331 5 91 6.5 8.0 7.2 0.6 124 chr2L 12759207 intergenic not near genes chr2L 12759269 intergenic not near genes chr2L 12759331 intergenic not near genes chr2L_5_12755001 chr2L_12755001 RAL-101 157 chr2L 12861697 12861729 chr2L 12863164 12863181 hobo 6 1461 3.5 1.5 2.5 1.7 1484 chr2L 12861697 intergenic not near genes chr2L 12862439 intergenic not near genes chr2L 12863181 intergenic not near genes chr2L_6_12860001 chr2L_12860001 RAL-101 158 chr2L 12894022 12894039 chr2L 12895486 12895493 hobo 5 1464 6.0 2.5 4.2 1.0 1471 chr2L 12894022 intergenic not near genes chr2L 12894758 intergenic not near genes chr2L 12895493 intergenic not near genes chr2L_5_12890001 chr2L_12890001 RAL-101 159 chr2L 12933854 12933875 chr2L 12941319 12941342 blood 8 7466 3.5 4.0 3.8 1.7 7488 chr2L 12933854 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941342 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-101 160 chr2L 13071828 13071851 chr2L 13072207 13072231 5 380 10.5 7.0 8.8 0.5 403 chr2L 13071828 intergenic not near genes chr2L 13072030 intergenic not near genes chr2L 13072231 intergenic not near genes chr2L_5_13070001 chr2L_13070001 RAL-101 161 chr2L 13152227 13152259 chr2L 13152305 13152337 6 78 6.5 1.5 4.0 1.2 110 chr2L 13152227 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152337 intergenic not near genes chr2L_6_13150001 chr2L_13150001 RAL-101 162 chr2L 13369292 13369321 chr2L 13369388 13369417 4 96 6.5 9.5 8.0 0.4 125 chr2L 13369292 5` UTR CG31855 + chr2L 13369354 5` UTR CG31855 + chr2L 13369417 exon CG31855 + chr2L_4_13365001 chr2L_13365001 RAL-101 163 chr2L 13405648 13405676 chr2L 13410445 13410473 Doc 9 4796 2.5 1.0 1.8 3.2 4825 chr2L 13405648 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-101 164 chr2L 13481447 13481475 chr2L 13482054 13482079 jockey 8 606 2.5 2.0 2.2 2.5 632 chr2L 13481447 intron CG42784 + chr2L 13481763 intron CG42784 + chr2L 13482079 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-101 165 chr2L 13622206 13622231 chr2L 13622309 13622326 4 101 10.0 6.0 8.0 0.4 120 chr2L 13622206 intron kuz + chr2L 13622266 intron kuz + chr2L 13622326 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-101 166 chr2L 13692190 13692218 chr2L 13692295 13692323 6 105 6.0 4.0 5.0 1.0 133 chr2L 13692190 intron CG31814 - chr2L 13692256 intron CG31814 - chr2L 13692323 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-101 167 chr2L 13693007 13693037 chr2L 13693083 13693112 6 74 3.0 4.5 3.8 1.2 105 chr2L 13693007 intron CG31814 - chr2L 13693060 intron CG31814 - chr2L 13693112 intron CG31814 - chr2L_6_13690001 chr2L_13690001 RAL-101 168 chr2L 13761806 13761824 chr2L 13762916 13762935 Doc 4 1110 4.5 1.0 2.8 1.1 1129 chr2L 13761806 intron TM9SF4 + chr2L 13762370 intron TM9SF4 + chr2L 13762935 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-101 169 chr2L 13853084 13853113 chr2L 13862234 13862263 roo 9 9150 0.0 2.0 1.0 4.5 9179 chr2L 13853084 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862263 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-101 170 chr2L 14010409 14010424 chr2L 14010485 14010500 6 76 3.5 3.5 3.5 1.3 91 chr2L 14010409 intergenic not near genes chr2L 14010454 intergenic not near genes chr2L 14010500 intergenic not near genes chr2L_6_14010001 chr2L_14010001 RAL-101 171 chr2L 14180064 14180087 chr2L 14180139 14180162 5 75 3.5 5.5 4.5 0.9 98 chr2L 14180064 intron CG43333 - chr2L 14180113 intron CG43333 - chr2L 14180162 intron CG43333 - chr2L_5_14180001 chr2L_14180001 RAL-101 172 chr2L 14426632 14426656 chr2L 14426710 14426733 4 77 12.5 10.5 11.5 0.3 101 chr2L 14426632 intergenic not near genes chr2L 14426682 intergenic not near genes chr2L 14426733 intergenic not near genes chr2L_4_14425001 chr2L_14425001 RAL-101 173 chr2L 14532197 14532207 chr2L 14532277 14532284 4 78 11.5 10.0 10.8 0.3 87 chr2L 14532197 intergenic CR44852 - chr2L 14532240 intergenic CR44852 - chr2L 14532284 intergenic CR44852 - chr2L_4_14530001 chr2L_14530001 RAL-101 174 chr2L 14707213 14707238 chr2L 14707332 14707355 7 119 1.0 0.5 0.8 3.9 142 chr2L 14707213 intergenic not near genes chr2L 14707284 intergenic not near genes chr2L 14707355 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-101 175 chr2L 14747533 14747566 chr2L 14747619 14747653 4 87 6.0 8.0 7.0 0.5 120 chr2L 14747533 intergenic not near genes chr2L 14747593 intergenic not near genes chr2L 14747653 intergenic not near genes chr2L_4_14745001 chr2L_14745001 RAL-101 176 chr2L 14803884 14803913 chr2L 14809087 14809116 copia 8 5202 1.5 3.0 2.2 2.5 5232 chr2L 14803884 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_8_14805001 chr2L_14805001 RAL-101 177 chr2L 14833797 14833825 chr2L 14833897 14833929 4 102 0.5 1.0 0.8 2.2 132 chr2L 14833797 intergenic not near genes chr2L 14833863 intergenic not near genes chr2L 14833929 intergenic not near genes chr2L_4_14830001 chr2L_14830001 RAL-101 178 chr2L 14840981 14841010 chr2L 14841068 14841096 4 86 0.0 2.0 1.0 2.0 115 chr2L 14840981 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841096 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-101 179 chr2L 14864813 14864833 chr2L 14864959 14864978 4 146 6.0 5.0 5.5 0.6 165 chr2L 14864813 intergenic not near genes chr2L 14864896 intergenic not near genes chr2L 14864978 intergenic not near genes chr2L_4_14860001 chr2L_14860001 RAL-101 180 chr2L 14889962 14889988 chr2L 14890387 14890413 jockey 6 425 1.5 4.5 3.0 1.5 451 chr2L 14889962 intergenic not near genes chr2L 14890188 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_6_14890001 chr2L_14890001 RAL-101 181 chr2L 15026020 15026047 chr2L 15026101 15026127 5 81 9.0 10.0 9.5 0.5 107 chr2L 15026020 exon GABA-B-R1 + chr2L 15026074 intron GABA-B-R1 + chr2L 15026127 intron GABA-B-R1 + chr2L_5_15025001 chr2L_15025001 RAL-101 182 chr2L 15127766 15127789 chr2L 15127852 15127875 6 86 9.0 10.5 9.8 0.6 109 chr2L 15127766 intergenic not near genes chr2L 15127820 intergenic not near genes chr2L 15127875 intergenic not near genes chr2L_6_15125001 chr2L_15125001 RAL-101 183 chr2L 15287968 15287986 chr2L 15288348 15288366 6 380 10.0 9.0 9.5 0.6 398 chr2L 15287968 intergenic not near genes chr2L 15288167 intergenic not near genes chr2L 15288366 intergenic not near genes chr2L_6_15285001 chr2L_15285001 RAL-101 184 chr2L 15313746 15313759 chr2L 15313867 15313880 4 121 13.5 8.5 11.0 0.3 134 chr2L 15313746 intergenic not near genes chr2L 15313813 intergenic not near genes chr2L 15313880 intergenic not near genes chr2L_4_15310001 chr2L_15310001 RAL-101 185 chr2L 15510936 15510967 chr2L 15511030 15511061 4 94 6.5 7.5 7.0 0.5 125 chr2L 15510936 intergenic not near genes chr2L 15510998 intergenic not near genes chr2L 15511061 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-101 186 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 12.5 14.0 13.2 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-101 187 chr2L 16141173 16141194 chr2L 16146380 16146401 copia 6 5207 1.5 1.5 1.5 2.4 5228 chr2L 16141173 intergenic not near genes chr2L 16143787 intergenic not near genes chr2L 16146401 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-101 188 chr2L 9084336 9084340 chr2L 16217660 16217660 9 7133321 13.5 14.0 13.8 0.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-101 189 chr2L 16280253 16280288 chr2L 16281420 16281451 1360 8 1165 1.5 2.5 2.0 2.7 1198 chr2L 16280253 intron crp - chr2L 16280852 intron crp - chr2L 16281451 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-101 190 chr2L 16709079 16709104 chr2L 16709163 16709188 7 84 0.5 3.0 1.8 2.5 109 chr2L 16709079 intron CG31808 - chr2L 16709134 intron CG31808 - chr2L 16709188 intron CG31808 - chr2L_7_16705001 chr2L_16705001 RAL-101 191 chr2L 16736491 16736497 chr2L 16743696 16743702 5 7205 16.5 18.0 17.2 0.3 7211 chr2L 16736491 exon glu - chr2L 16740096 intron ChLD3 + chr2L 16743702 intron CG17912 + chr2L_5_16740001 chr2L_16740001 RAL-101 192 chr2L 16873281 16873295 chr2L 16873358 16873371 5 77 4.5 4.0 4.2 1.0 90 chr2L 16873281 intron CR31781 + chr2L 16873326 intron CR31781 + chr2L 16873371 intron CR31781 + chr2L_5_16870001 chr2L_16870001 RAL-101 193 chr2L 17167563 17167585 chr2L 17167804 17167826 pogo 5 237 1.0 0.5 0.8 2.8 263 chr2L 17167563 intron,intron CG34106 +,beat-IIIa + chr2L 17167694 intron,intron CG34106 +,beat-IIIa + chr2L 17167826 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-101 194 chr2L 17260887 17260906 chr2L 17260970 17260988 7 83 0.0 1.5 0.8 3.9 101 chr2L 17260887 intergenic beat-IIIc - chr2L 17260938 intergenic beat-IIIc - chr2L 17260988 intergenic beat-IIIc - chr2L_7_17260001 chr2L_17260001 RAL-101 195 chr2L 17273193 17273221 chr2L 17277976 17277988 F-element 5 4779 5.0 2.0 3.5 1.1 4795 chr2L 17273193 intergenic not near genes chr2L 17275590 intergenic not near genes chr2L 17277988 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-101 196 chr2L 17335558 17335580 chr2L 17336723 17336746 1360 4 1166 0.0 2.0 1.0 2.0 1188 chr2L 17335558 intergenic not near genes chr2L 17336152 intergenic not near genes chr2L 17336746 intergenic not near genes chr2L_4_17335001 chr2L_17335001 RAL-101 197 chr2L 17565395 17565407 chr2L 17565485 17565498 4 91 2.0 5.5 3.8 0.8 103 chr2L 17565395 intergenic not near genes chr2L 17565446 intergenic not near genes chr2L 17565498 intergenic not near genes chr2L_4_17565001 chr2L_17565001 RAL-101 198 chr2L 17703181 17703204 chr2L 17703259 17703282 5 78 2.5 3.0 2.8 1.3 101 chr2L 17703181 intron CadN - chr2L 17703232 intron CadN - chr2L 17703282 intron CadN - chr2L_5_17700001 chr2L_17700001 RAL-101 199 chr2L 17819921 17819955 chr2L 17825123 17825157 copia 4 5202 0.5 2.0 1.2 1.8 5236 chr2L 17819921 intron CadN2 - chr2L 17822539 intron CadN2 - chr2L 17825157 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-101 200 chr2L 17944420 17944436 chr2L 17944583 17944599 4 163 7.5 6.5 7.0 0.5 179 chr2L 17944420 intergenic not near genes chr2L 17944510 intergenic not near genes chr2L 17944599 intergenic not near genes chr2L_4_17940001 chr2L_17940001 RAL-101 201 chr2L 17951948 17951974 chr2L 17953414 17953441 hobo 4 1466 0.5 3.5 2.0 1.3 1493 chr2L 17951948 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953441 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-101 202 chr2L 18051876 18051906 chr2L 18061022 18061053 roo 11 9146 2.5 3.0 2.8 2.9 9177 chr2L 18051876 intron rdo + chr2L 18056464 intron rdo + chr2L 18061053 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-101 203 chr2L 18111248 18111261 chr2L 18111339 18111352 4 91 3.5 2.5 3.0 1.0 104 chr2L 18111248 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111352 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-101 204 chr2L 18408023 18408049 chr2L 18412807 18412833 Doc 4 4784 3.5 0.0 1.8 1.4 4810 chr2L 18408023 intergenic not near genes chr2L 18410428 intergenic not near genes chr2L 18412833 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-101 205 chr2L 18628085 18628111 chr2L 18628286 18628312 4 201 7.0 4.0 5.5 0.6 227 chr2L 18628085 intron MESR3 + chr2L 18628198 intron MESR3 + chr2L 18628312 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-101 206 chr2L 18898397 18898426 chr2L 18898479 18898504 5 80 3.5 1.0 2.2 1.6 107 chr2L 18898397 intergenic not near genes chr2L 18898450 intergenic not near genes chr2L 18898504 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-101 207 chr2L 19147368 19147399 chr2L 19154403 19154434 297 5 7035 1.0 1.0 1.0 2.5 7066 chr2L 19147368 intron brat + chr2L 19150901 intron brat + chr2L 19154434 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-101 208 chr2L 19329686 19329714 chr2L 19329780 19329806 4 92 5.0 8.0 6.5 0.5 120 chr2L 19329686 intergenic not near genes chr2L 19329746 intergenic not near genes chr2L 19329806 intergenic not near genes chr2L_4_19325001 chr2L_19325001 RAL-101 209 chr2L 19345036 19345050 chr2L 19357245 19357259 blood 5 12208 3.0 3.5 3.2 1.2 12223 chr2L 19345036 intron dnt - chr2L 19351148 intron dnt - chr2L 19357259 intron dnt - chr2L_5_19350001 chr2L_19350001 RAL-101 210 chr2L 19357547 19357569 chr2L 19357637 19357659 9 90 5.0 5.0 5.0 1.5 112 chr2L 19357547 intron dnt - chr2L 19357603 intron dnt - chr2L 19357659 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-101 211 chr2L 19393967 19393980 chr2L 19394081 19394094 4 114 6.0 2.5 4.2 0.8 127 chr2L 19393967 intron CG17544 - chr2L 19394030 intron CG17544 - chr2L 19394094 intron CG17544 - chr2L_4_19390001 chr2L_19390001 RAL-101 212 chr2L 19407727 19407738 chr2L 19407921 19407935 6 196 2.5 5.0 3.8 1.2 208 chr2L 19407727 intron Pax - chr2L 19407831 intron Pax - chr2L 19407935 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-101 213 chr2L 19544612 19544619 chr2L 19544673 19544696 4 72 9.5 10.5 10.0 0.4 84 chr2L 19544612 exon ref(2)P + chr2L 19544654 exon ref(2)P + chr2L 19544696 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-101 214 chr2L 19560026 19560037 chr2L 19560278 19560289 4 252 11.5 13.0 12.2 0.3 263 chr2L 19560026 exon Tep5 + chr2L 19560158 exon Tep5 + chr2L 19560289 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-101 215 chr2L 19620093 19620130 chr2L 19621082 19621101 jockey 9 984 6.0 4.0 5.0 1.5 1008 chr2L 19620093 intron Lar + chr2L 19620597 intron Lar + chr2L 19621101 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-101 216 chr2L 19697144 19697155 chr2L 19697230 19697248 4 91 4.5 7.5 6.0 0.6 104 chr2L 19697144 intron Lar + chr2L 19697196 intron Lar + chr2L 19697248 intron Lar + chr2L_4_19695001 chr2L_19695001 RAL-101 217 chr2L 19703541 19703559 chr2L 19712677 19712694 roo 9 9135 4.5 3.0 3.8 1.9 9153 chr2L 19703541 intron Lar + chr2L 19708118 intron Lar + chr2L 19712694 intron Lar + chr2L_9_19705001 chr2L_19705001 RAL-101 218 chr2L 19737355 19737388 chr2L 19740823 19740857 1360 13 3467 1.5 3.5 2.5 3.7 3502 chr2L 19737355 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740857 intergenic not near genes chr2L_13_19735001 chr2L_19735001 RAL-101 219 chr2L 19837277 19837310 chr2L 19837357 19837387 8 80 9.0 10.0 9.5 0.8 110 chr2L 19837277 intron sick + chr2L 19837332 intron sick + chr2L 19837387 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-101 220 chr2L 19902340 19902361 chr2L 19902466 19902486 5 125 6.5 7.5 7.0 0.6 146 chr2L 19902340 intron sick + chr2L 19902413 intron sick + chr2L 19902486 intron sick + chr2L_5_19900001 chr2L_19900001 RAL-101 221 chr2L 19964833 19964868 chr2L 19964918 19964953 8 79 4.5 2.5 3.5 1.8 120 chr2L 19964833 intron CG10680 + chr2L 19964893 exon CG10680 + chr2L 19964953 exon CG10680 + chr2L_8_19960001 chr2L_19960001 RAL-101 222 chr2L 20069526 20069549 chr2L 20069606 20069629 7 80 14.5 7.5 11.0 0.6 103 chr2L 20069526 intron bwa + chr2L 20069578 intron bwa + chr2L 20069629 intron bwa + chr2L_7_20065001 chr2L_20065001 RAL-101 223 chr2L 20085465 20085483 chr2L 20085556 20085575 7 91 3.5 4.5 4.0 1.4 110 chr2L 20085465 intron neb + chr2L 20085520 intron neb + chr2L 20085575 intron neb + chr2L_7_20085001 chr2L_20085001 RAL-101 224 chr2L 20269610 20269623 chr2L 20269834 20269847 5 223 4.5 5.0 4.8 0.9 237 chr2L 20269610 intergenic not near genes chr2L 20269728 intergenic not near genes chr2L 20269847 intergenic not near genes chr2L_5_20265001 chr2L_20265001 RAL-101 225 chr2L 20396808 20396828 chr2L 20396883 20396904 4 74 6.5 7.5 7.0 0.5 96 chr2L 20396808 intron CG10947 - chr2L 20396856 intron CG10947 - chr2L 20396904 intron CG10947 - chr2L_4_20395001 chr2L_20395001 RAL-101 226 chr2L 20498117 20498139 chr2L 20498332 20498354 5 215 9.0 6.5 7.8 0.6 237 chr2L 20498117 intergenic not near genes chr2L 20498236 intergenic not near genes chr2L 20498354 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-101 227 chr2L 20498691 20498708 chr2L 20498789 20498807 8 98 1.5 5.0 3.2 1.9 116 chr2L 20498691 intergenic not near genes chr2L 20498749 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_8_20495001 chr2L_20495001 RAL-101 228 chr2L 20568669 20568684 chr2L 20569058 20569074 X-element 6 389 1.5 3.5 2.5 1.7 405 chr2L 20568669 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569074 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-101 229 chr2L 20576221 20576248 chr2L 20583689 20583716 blood 7 7465 3.0 3.0 3.0 1.8 7495 chr2L 20576221 intergenic not near genes chr2L 20579968 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-101 230 chr2L 20901471 20901487 chr2L 20902634 20902648 1360 4 1163 1.5 3.0 2.2 1.2 1177 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902648 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-101 231 chr2L 20976641 20976675 chr2L 20981456 20981490 X-element 7 4815 2.0 1.0 1.5 2.8 4849 chr2L 20976641 intron CG42238 - chr2L 20979066 intron CG42238 - chr2L 20981490 intron CG42238 - chr2L_7_20975001 chr2L_20975001 RAL-101 232 chr2L 21020272 21020305 chr2L 21023948 21023982 NOF 7 3677 1.5 2.0 1.8 2.5 3710 chr2L 21020272 intron CG42238 - chr2L 21022127 intron CG42238 - chr2L 21023982 intron CG42238 - chr2L_7_21020001 chr2L_21020001 RAL-101 233 chr2L 21041145 21041165 chr2L 21049406 21049420 Tirant 4 8259 1.0 5.0 3.0 1.0 8275 chr2L 21041145 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049420 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-101 234 chr2L 21284068 21284080 chr2L 21284540 21284549 4 472 7.0 6.0 6.5 0.5 481 chr2L 21284068 intergenic not near genes chr2L 21284308 intergenic not near genes chr2L 21284549 intergenic not near genes chr2L_4_21280001 chr2L_21280001 RAL-101 235 chr2L 21285646 21285669 chr2L 21285744 21285767 4 98 9.5 8.5 9.0 0.4 121 chr2L 21285646 intergenic Mio - chr2L 21285706 intergenic Mio - chr2L 21285767 intergenic Mio - chr2L_4_21285001 chr2L_21285001 RAL-101 236 chr2L 21286605 21286618 chr2L 21286684 21286696 4 78 1.0 1.0 1.0 2.0 91 chr2L 21286605 exon Mio - chr2L 21286650 intron Mio - chr2L 21286696 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-101 237 chr2L 21836394 21836402 chr2L 21836484 21836492 5 90 9.5 7.0 8.2 0.5 98 chr2L 21836394 3` UTR tsh + chr2L 21836443 3` UTR tsh + chr2L 21836492 3` UTR tsh + chr2L_5_21835001 chr2L_21835001 RAL-101 238 chr2L 21981682 21981715 chr2L 21990847 21990880 roo 6 9162 3.0 3.0 3.0 1.5 9198 chr2L 21981682 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-101 239 chr2L 21997589 21997595 chr2L 21997795 21997802 4 206 9.0 6.5 7.8 0.5 213 chr2L 21997589 intergenic not near genes chr2L 21997696 intergenic not near genes chr2L 21997802 intergenic not near genes chr2L_4_21995001 chr2L_21995001 RAL-101 240 chr2L 22239427 22239460 chr2L 22239508 22239541 7 81 2.5 1.5 2.0 2.3 114 chr2L 22239427 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239541 3` UTR CR43765 - chr2L_7_22235001 chr2L_22235001 RAL-101 241 chr2R 529325 529356 chr2R 537950 537980 Max-element 6 8624 2.0 0.5 1.2 2.7 8655 chr2R 529325 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537980 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-101 242 chr2R 1082366 1082384 chr2R 1087142 1087160 Doc 4 4776 0.5 3.0 1.8 1.4 4794 chr2R 1082366 intron rl + chr2R 1084763 intron rl + chr2R 1087160 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-101 243 chr2R 1318052 1318068 chr2R 1318118 1318147 4 76 9.5 8.0 8.8 0.4 95 chr2R 1318052 intergenic not near genes chr2R 1318100 intergenic not near genes chr2R 1318147 intergenic not near genes chr2R_4_1315001 chr2R_1315001 RAL-101 244 chr2R 2498990 2499017 chr2R 2508137 2508164 roo 4 9145 3.0 4.0 3.5 0.9 9174 chr2R 2498990 intron MFS17 - chr2R 2503577 intron MFS17 - chr2R 2508164 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-101 245 chr2R 3293744 3293759 chr2R 3293822 3293837 6 78 2.5 2.0 2.2 1.9 93 chr2R 3293744 intergenic not near genes chr2R 3293790 intergenic not near genes chr2R 3293837 intergenic not near genes chr2R_6_3290001 chr2R_3290001 RAL-101 246 chr2R 4604551 4604578 chr2R 4604627 4604640 5 75 2.5 2.5 2.5 1.4 89 chr2R 4604551 intron p120ctn + chr2R 4604596 intron p120ctn + chr2R 4604640 intron p120ctn + chr2R_5_4600001 chr2R_4600001 RAL-101 247 chr2R 4624644 4624670 chr2R 4626549 4626575 Bica 4 1905 7.5 15.5 11.5 0.3 1931 chr2R 4624644 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626575 intergenic not near genes chr2R_4_4625001 chr2R_4625001 RAL-101 248 chr2R 4940960 4940977 chr2R 4943410 4943427 4 2449 7.5 8.0 7.8 0.5 2467 chr2R 4940960 intron Ir41a + chr2R 4942194 intron Ir41a + chr2R 4943427 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-101 249 chr2R 5019280 5019309 chr2R 5019366 5019392 4 85 2.0 0.5 1.2 1.8 112 chr2R 5019280 intron Ir41a + chr2R 5019336 intron Ir41a + chr2R 5019392 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-101 250 chr2R 5040752 5040764 chr2R 5041241 5041254 4 490 0.0 1.5 0.8 2.2 502 chr2R 5040752 intergenic not near genes chr2R 5041003 intergenic not near genes chr2R 5041254 intergenic not near genes chr2R_4_5040001 chr2R_5040001 RAL-101 251 chr2R 5110913 5110937 chr2R 5111000 5111025 5 88 7.5 7.5 7.5 0.6 112 chr2R 5110913 intergenic not near genes chr2R 5110969 intergenic not near genes chr2R 5111025 intergenic not near genes chr2R_5_5110001 chr2R_5110001 RAL-101 252 chr2R 5256763 5256778 chr2R 5256850 5256864 4 87 7.0 5.5 6.2 0.6 101 chr2R 5256763 intergenic not near genes chr2R 5256814 intergenic not near genes chr2R 5256864 intergenic not near genes chr2R_4_5255001 chr2R_5255001 RAL-101 253 chr2R 5460521 5460555 chr2R 5460625 5460659 6 97 10.5 9.0 9.8 0.6 138 chr2R 5460521 intergenic not near genes chr2R 5460590 intergenic not near genes chr2R 5460659 intergenic not near genes chr2R_6_5460001 chr2R_5460001 RAL-101 254 chr2R 5477659 5477683 chr2R 5477735 5477767 5 82 10.0 8.5 9.2 0.5 108 chr2R 5477659 intron CG30440 - chr2R 5477713 intron CG30440 - chr2R 5477767 intron CG30440 - chr2R_5_5475001 chr2R_5475001 RAL-101 255 chr2R 5581403 5581425 chr2R 5627612 5627633 6 46209 0.5 12.0 6.2 0.8 46230 chr2R 5581403 intergenic not near genes chr2R 5604518 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-101 256 chr2R 5869276 5869302 chr2R 5874352 5874378 flea 12 5076 2.0 2.5 2.2 3.8 5102 chr2R 5869276 intergenic not near genes chr2R 5871827 intergenic not near genes chr2R 5874378 intergenic not near genes chr2R_12_5870001 chr2R_5870001 RAL-101 257 chr2R 5917789 5917801 chr2R 5917868 5917880 4 78 7.5 9.5 8.5 0.4 91 chr2R 5917789 intron CG43366 + chr2R 5917834 intron CG43366 + chr2R 5917880 intron CG43366 + chr2R_4_5915001 chr2R_5915001 RAL-101 258 chr2R 6096725 6096751 chr2R 6101912 6101949 BS 6 5192 2.5 2.0 2.2 1.9 5224 chr2R 6096725 intron EcR - chr2R 6099337 intron EcR - chr2R 6101949 intron EcR - chr2R_6_6095001 chr2R_6095001 RAL-101 259 chr2R 6178678 6178704 chr2R 6178765 6178791 4 85 5.5 3.0 4.2 0.8 113 chr2R 6178678 intergenic not near genes chr2R 6178734 intergenic not near genes chr2R 6178791 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-101 260 chr2R 6494524 6494544 chr2R 6499286 6499306 F-element 6 4762 1.5 1.5 1.5 2.4 4782 chr2R 6494524 intergenic not near genes chr2R 6496915 intergenic not near genes chr2R 6499306 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-101 261 chr2R 6633212 6633228 chr2R 6633289 6633305 4 77 7.5 6.5 7.0 0.5 93 chr2R 6633212 intergenic Vha16-1 -,Trap1 - chr2R 6633258 intergenic Vha16-1 -,Trap1 - chr2R 6633305 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-101 262 chr2R 6874537 6874558 chr2R 6874618 6874639 5 80 6.0 7.0 6.5 0.7 102 chr2R 6874537 exon,intron CG9447 -,CR44169 + chr2R 6874588 exon,intron CG9447 -,CR44169 + chr2R 6874639 exon,intron CG9447 -,CR44169 + chr2R_5_6870001 chr2R_6870001 RAL-101 263 chr2R 6898315 6898342 chr2R 6898657 6898685 4 343 2.5 7.0 4.8 0.7 370 chr2R 6898315 intron CG30158 + chr2R 6898500 intron CG30158 + chr2R 6898685 intron CG30158 + chr2R_4_6895001 chr2R_6895001 RAL-101 264 chr2R 6948081 6948106 chr2R 6948157 6948182 4 76 1.5 3.5 2.5 1.1 101 chr2R 6948081 intron,intron mim -,CheB42c - chr2R 6948132 intron,intron mim -,CheB42c - chr2R 6948182 intron,intron mim -,CheB42c - chr2R_4_6945001 chr2R_6945001 RAL-101 265 chr2R 6978806 6978830 chr2R 6978948 6978971 4 142 2.5 3.0 2.8 1.1 165 chr2R 6978806 intron vimar - chr2R 6978888 intron vimar - chr2R 6978971 intron vimar - chr2R_4_6975001 chr2R_6975001 RAL-101 266 chr2R 7162326 7162352 chr2R 7162414 7162440 5 83 13.5 13.0 13.2 0.4 114 chr2R 7162326 intron pk + chr2R 7162383 intron pk + chr2R 7162440 intron pk + chr2R_5_7160001 chr2R_7160001 RAL-101 267 chr2R 7173794 7173812 chr2R 7174047 7174064 4 252 2.5 3.5 3.0 1.0 270 chr2R 7173794 intron pk + chr2R 7173929 intron pk + chr2R 7174064 intron pk + chr2R_4_7170001 chr2R_7170001 RAL-101 268 chr2R 7196565 7196583 chr2R 7201340 7201358 F-element 4 4775 1.0 0.5 0.8 2.2 4793 chr2R 7196565 intron pk + chr2R 7198962 intron pk + chr2R 7201358 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-101 269 chr2R 7235825 7235849 chr2R 7240916 7240941 jockey 5 5092 3.5 3.5 3.5 1.1 5116 chr2R 7235825 intergenic not near genes chr2R 7238383 intergenic not near genes chr2R 7240941 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-101 270 chr2R 7248727 7248748 chr2R 7250314 7250335 5 1589 26.0 20.5 23.2 0.2 1608 chr2R 7248727 intergenic Gadd45 + chr2R 7249531 exon Gadd45 + chr2R 7250335 3` UTR Gadd45 + chr2R_5_7245001 chr2R_7245001 RAL-101 271 chr2R 7353390 7353411 chr2R 7353496 7353517 4 106 5.0 4.0 4.5 0.7 127 chr2R 7353390 intron Dscam1 - chr2R 7353454 intron Dscam1 - chr2R 7353517 intron Dscam1 - chr2R_4_7350001 chr2R_7350001 RAL-101 272 chr2R 7418148 7418169 chr2R 7418227 7418248 7 79 0.5 2.0 1.2 3.2 100 chr2R 7418148 intergenic not near genes chr2R 7418198 intergenic not near genes chr2R 7418248 intergenic not near genes chr2R_7_7415001 chr2R_7415001 RAL-101 273 chr2R 7532016 7532048 chr2R 7532501 7532532 7 482 4.0 5.5 4.8 1.2 516 chr2R 7532016 intron Drat - chr2R 7532274 intron Drat - chr2R 7532532 intron Drat - chr2R_7_7530001 chr2R_7530001 RAL-101 274 chr2R 7563227 7563247 chr2R 7563317 7563339 5 92 12.0 11.5 11.8 0.4 112 chr2R 7563227 3` UTR Corin + chr2R 7563283 3` UTR Corin + chr2R 7563339 3` UTR Corin + chr2R_5_7560001 chr2R_7560001 RAL-101 275 chr2R 7642872 7642891 chr2R 7642952 7642971 4 77 6.5 10.0 8.2 0.4 99 chr2R 7642872 intron CG43340 + chr2R 7642922 intron CG43340 + chr2R 7642971 intron CG43340 + chr2R_4_7640001 chr2R_7640001 RAL-101 276 chr2R 7708362 7708372 chr2R 7708459 7708470 7 98 2.5 3.5 3.0 1.8 108 chr2R 7708362 intron tor - chr2R 7708416 intron tor - chr2R 7708470 intron tor - chr2R_7_7705001 chr2R_7705001 RAL-101 277 chr2R 7760291 7760302 chr2R 7760425 7760428 4 133 1.0 7.5 4.2 0.8 137 chr2R 7760291 intron,intron CG30497 -,CG45093 - chr2R 7760360 intron,intron CG30497 -,CG45093 - chr2R 7760428 intron,intron CG30497 -,CG45093 - chr2R_4_7760001 chr2R_7760001 RAL-101 278 chr2R 7809573 7809583 chr2R 7809651 7809660 4 78 5.0 2.5 3.8 0.8 87 chr2R 7809573 3` UTR sax + chr2R 7809616 3` UTR sax + chr2R 7809660 3` UTR sax + chr2R_4_7805001 chr2R_7805001 RAL-101 279 chr2R 7809584 7809599 chr2R 7809643 7809677 8 72 2.5 2.0 2.2 2.5 93 chr2R 7809584 3` UTR sax + chr2R 7809630 3` UTR sax + chr2R 7809677 3` UTR sax + chr2R_8_7805001 chr2R_7805001 RAL-101 280 chr2R 7815684 7815700 chr2R 7822153 7822169 Burdock 5 6469 1.5 4.0 2.8 1.3 6485 chr2R 7815684 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822169 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-101 281 chr2R 7842204 7842226 chr2R 7842292 7842313 7 86 3.0 4.0 3.5 1.6 109 chr2R 7842204 intron Dgk - chr2R 7842258 intron Dgk - chr2R 7842313 intron Dgk - chr2R_7_7840001 chr2R_7840001 RAL-101 282 chr2R 7869195 7869214 chr2R 7873981 7873999 Doc 4 4785 4.0 3.5 3.8 0.8 4804 chr2R 7869195 intron Dgk - chr2R 7871597 intron Dgk - chr2R 7873999 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-101 283 chr2R 7916423 7916453 chr2R 7916508 7916538 7 84 1.5 1.5 1.5 2.8 115 chr2R 7916423 5` UTR CG12159 - chr2R 7916480 intergenic CG12159 -,Cul1 + chr2R 7916538 intergenic CG12159 -,Cul1 + chr2R_7_7915001 chr2R_7915001 RAL-101 284 chr2R 8015663 8015681 chr2R 8017673 8017703 4 2019 1.5 3.0 2.2 1.2 2040 chr2R 8015663 intergenic mir-4981 + chr2R 8016683 intergenic not near genes chr2R 8017703 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-101 285 chr2R 8067074 8067098 chr2R 8067158 8067182 7 84 1.0 2.5 1.8 2.5 108 chr2R 8067074 intron CG17977 - chr2R 8067128 exon CG17977 - chr2R 8067182 exon CG17977 - chr2R_7_8065001 chr2R_8065001 RAL-101 286 chr2R 8105938 8105966 chr2R 8106029 8106057 8 90 3.0 3.0 3.0 2.0 119 chr2R 8105938 5` UTR Cul4 - chr2R 8105998 intron Cul4 - chr2R 8106057 5` UTR Cul4 - chr2R_8_8105001 chr2R_8105001 RAL-101 287 chr2R 8157903 8157908 chr2R 8157989 8157995 4 87 4.5 1.5 3.0 1.0 92 chr2R 8157903 5` UTR CR44068 + chr2R 8157949 5` UTR CR44068 + chr2R 8157995 5` UTR CR44068 + chr2R_4_8155001 chr2R_8155001 RAL-101 288 chr2R 8160936 8160944 chr2R 8161026 8161034 1360 4 90 8.0 8.5 8.2 0.4 98 chr2R 8160936 intron CG8708 - chr2R 8160985 intron CG8708 - chr2R 8161034 intron CG8708 - chr2R_4_8160001 chr2R_8160001 RAL-101 289 chr2R 8330865 8330891 chr2R 8331350 8331377 roo 6 486 2.5 2.0 2.2 1.9 512 chr2R 8330865 intron pdm3 + chr2R 8331121 intron pdm3 + chr2R 8331377 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-101 290 chr2R 8379784 8379816 chr2R 8379880 8379912 5 95 5.0 4.5 4.8 0.9 128 chr2R 8379784 intron pdm3 + chr2R 8379848 intron pdm3 + chr2R 8379912 intron pdm3 + chr2R_5_8375001 chr2R_8375001 RAL-101 291 chr2R 8404230 8404254 chr2R 8404338 8404362 5 104 4.0 1.5 2.8 1.3 132 chr2R 8404230 exon CG2121 - chr2R 8404296 intron CG2121 - chr2R 8404362 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-101 292 chr2R 8466440 8466457 chr2R 8466858 8466893 8 430 1.0 2.5 1.8 2.9 453 chr2R 8466440 exon Mal-A6 + chr2R 8466666 exon Mal-A6 + chr2R 8466893 exon Mal-A6 + chr2R_8_8465001 chr2R_8465001 RAL-101 293 chr2R 8511621 8511638 chr2R 8511701 8511704 7 76 5.5 11.0 8.2 0.8 83 chr2R 8511621 intron mtt - chr2R 8511662 intron mtt - chr2R 8511704 intron mtt - chr2R_7_8510001 chr2R_8510001 RAL-101 294 chr2R 8524067 8524104 chr2R 8524149 8524186 12 80 2.5 1.5 2.0 4.0 119 chr2R 8524067 intron mtt - chr2R 8524126 intron mtt - chr2R 8524186 intron mtt - chr2R_12_8520001 chr2R_8520001 RAL-101 295 chr2R 8566032 8566064 chr2R 8566983 8567010 1360 5 948 2.0 0.5 1.2 2.3 978 chr2R 8566032 5` UTR Cyp6a14 - chr2R 8566521 5` UTR Cyp6a14 - chr2R 8567010 5` UTR Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-101 296 chr2R 8569861 8569888 chr2R 8569962 8569994 8 102 3.5 1.5 2.5 2.3 133 chr2R 8569861 intergenic not near genes chr2R 8569928 intergenic not near genes chr2R 8569994 intergenic not near genes chr2R_8_8565001 chr2R_8565001 RAL-101 297 chr2R 8796582 8796607 chr2R 8796880 8796905 6 298 2.5 1.0 1.8 2.1 323 chr2R 8796582 intergenic not near genes chr2R 8796744 intergenic not near genes chr2R 8796905 intergenic not near genes chr2R_6_8795001 chr2R_8795001 RAL-101 298 chr2R 9212692 9212722 chr2R 9213178 9213208 roo 6 484 3.0 4.5 3.8 1.2 516 chr2R 9212692 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213208 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-101 299 chr2R 9331314 9331342 chr2R 9331394 9331422 8 80 7.0 6.5 6.8 1.0 108 chr2R 9331314 intron,intron CG13739 -,CG13954 - chr2R 9331368 intron,intron CG13739 -,CG13954 - chr2R 9331422 intron,intron CG13739 -,CG13954 - chr2R_8_9330001 chr2R_9330001 RAL-101 300 chr2R 9391058 9391088 chr2R 9391616 9391647 5 556 4.0 6.5 5.2 0.8 589 chr2R 9391058 intron l(2)03659 + chr2R 9391352 exon l(2)03659 + chr2R 9391647 exon l(2)03659 + chr2R_5_9390001 chr2R_9390001 RAL-101 301 chr2R 9650248 9650272 chr2R 9650330 9650354 4 82 4.0 5.0 4.5 0.7 106 chr2R 9650248 intron Mmp2 - chr2R 9650301 intron Mmp2 - chr2R 9650354 intron Mmp2 - chr2R_4_9650001 chr2R_9650001 RAL-101 302 chr2R 9651031 9651068 chr2R 9651114 9651151 6 83 3.0 1.5 2.2 1.9 120 chr2R 9651031 intron Mmp2 - chr2R 9651091 intron Mmp2 - chr2R 9651151 intron Mmp2 - chr2R_6_9650001 chr2R_9650001 RAL-101 303 chr2R 9945441 9945465 chr2R 9945637 9945661 BS 5 196 3.5 2.5 3.0 1.2 220 chr2R 9945441 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945661 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-101 304 chr2R 10005562 10005582 chr2R 10005670 10005689 4 108 1.0 2.0 1.5 1.6 127 chr2R 10005562 intron Pka-R2 - chr2R 10005626 intron Pka-R2 - chr2R 10005689 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-101 305 chr2R 10005847 10005881 chr2R 10007012 10007037 1360 17 1163 1.0 3.5 2.2 5.3 1190 chr2R 10005847 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007037 intron Pka-R2 - chr2R_17_10005001 chr2R_10005001 RAL-101 306 chr2R 10171137 10171142 chr2R 10171221 10171226 4 84 0.5 6.5 3.5 0.9 89 chr2R 10171137 intron KCNQ - chr2R 10171182 intron KCNQ - chr2R 10171226 intron KCNQ - chr2R_4_10170001 chr2R_10170001 RAL-101 307 chr2R 10172636 10172661 chr2R 10172748 10172772 4 112 1.0 0.0 0.5 2.7 136 chr2R 10172636 intron KCNQ - chr2R 10172704 intron KCNQ - chr2R 10172772 intron KCNQ - chr2R_4_10170001 chr2R_10170001 RAL-101 308 chr2R 10216200 10216221 chr2R 10216278 10216299 10 78 1.5 3.5 2.5 2.9 99 chr2R 10216200 intron,intron CG12912 -,Hr46 - chr2R 10216250 intron,intron CG12912 -,Hr46 - chr2R 10216299 intron,intron CG12912 -,Hr46 - chr2R_10_10215001 chr2R_10215001 RAL-101 309 chr2R 10266504 10266526 chr2R 10266594 10266615 4 90 3.0 1.0 2.0 1.3 111 chr2R 10266504 intron CG12910 + chr2R 10266560 intron CG12910 + chr2R 10266615 intron CG12910 + chr2R_4_10265001 chr2R_10265001 RAL-101 310 chr2R 10313319 10313353 chr2R 10313407 10313413 8 84 0.0 1.5 0.8 4.4 94 chr2R 10313319 intergenic not near genes chr2R 10313366 intergenic not near genes chr2R 10313413 intergenic Ndg + chr2R_8_10310001 chr2R_10310001 RAL-101 311 chr2R 10400398 10400428 chr2R 10400478 10400508 7 79 3.0 4.5 3.8 1.5 110 chr2R 10400398 intron CG42732 - chr2R 10400453 intron CG42732 - chr2R 10400508 intron CG42732 - chr2R_7_10400001 chr2R_10400001 RAL-101 312 chr2R 10457299 10457333 chr2R 10457383 10457400 6 81 2.0 2.0 2.0 2.0 101 chr2R 10457299 intron,intron Galphao +,Cyp49a1 - chr2R 10457350 intron,intron Galphao +,Cyp49a1 - chr2R 10457400 intron,intron Galphao +,Cyp49a1 - chr2R_6_10455001 chr2R_10455001 RAL-101 313 chr2R 10562189 10562218 chr2R 10562274 10562306 5 87 2.5 0.5 1.5 2.0 117 chr2R 10562189 exon psq + chr2R 10562248 intron psq + chr2R 10562306 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-101 314 chr2R 10585575 10585591 chr2R 10594157 10594174 Tirant 4 8582 0.5 2.0 1.2 1.8 8599 chr2R 10585575 intron psq + chr2R 10589874 intron psq + chr2R 10594174 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-101 315 chr2R 10693913 10693945 chr2R 10694005 10694034 12 88 6.0 4.5 5.2 1.9 121 chr2R 10693913 intron stan + chr2R 10693974 intron stan + chr2R 10694034 intron stan + chr2R_12_10690001 chr2R_10690001 RAL-101 316 chr2R 10772289 10772304 chr2R 10772386 10772410 6 104 2.0 3.0 2.5 1.7 121 chr2R 10772289 intron CG33144 - chr2R 10772350 intron CG33144 - chr2R 10772410 intron CG33144 - chr2R_6_10770001 chr2R_10770001 RAL-101 317 chr2R 10790145 10790177 chr2R 10790233 10790265 6 86 1.0 3.0 2.0 2.0 120 chr2R 10790145 intron CG33144 - chr2R 10790205 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_6_10790001 chr2R_10790001 RAL-101 318 chr2R 10871655 10871677 chr2R 10871733 10871761 7 82 0.0 2.5 1.2 3.2 106 chr2R 10871655 intron CG30015 - chr2R 10871708 intron CG30015 - chr2R 10871761 intron CG30015 - chr2R_7_10870001 chr2R_10870001 RAL-101 319 chr2R 10872764 10872787 chr2R 10872840 10872863 5 75 2.0 2.5 2.2 1.6 99 chr2R 10872764 intron CG30015 - chr2R 10872814 intron CG30015 - chr2R 10872863 intron CG30015 - chr2R_5_10870001 chr2R_10870001 RAL-101 320 chr2R 10948024 10948061 chr2R 10955575 10955612 17.6 9 7548 0.5 3.5 2.0 3.0 7588 chr2R 10948024 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-101 321 chr2R 11009817 11009845 chr2R 11018991 11019015 roo 5 9173 2.0 3.5 2.8 1.3 9198 chr2R 11009817 intron luna - chr2R 11014416 intron luna - chr2R 11019015 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-101 322 chr2R 11019884 11019906 chr2R 11024942 11024969 jockey 7 5061 1.5 2.0 1.8 2.5 5085 chr2R 11019884 intron luna - chr2R 11022426 intron luna - chr2R 11024969 intron luna - chr2R_7_11020001 chr2R_11020001 RAL-101 323 chr2R 11066461 11066470 chr2R 11066539 11066548 4 78 1.5 2.0 1.8 1.4 87 chr2R 11066461 intron luna - chr2R 11066504 intron luna - chr2R 11066548 intron luna - chr2R_4_11065001 chr2R_11065001 RAL-101 324 chr2R 11102866 11102886 chr2R 11102947 11102968 5 82 4.5 0.5 2.5 1.4 102 chr2R 11102866 intron luna - chr2R 11102917 intron luna - chr2R 11102968 intron luna - chr2R_5_11100001 chr2R_11100001 RAL-101 325 chr2R 11111157 11111182 chr2R 11111246 11111271 13 89 3.0 0.0 1.5 5.2 114 chr2R 11111157 intron luna - chr2R 11111214 intron luna - chr2R 11111271 intron luna - chr2R_13_11110001 chr2R_11110001 RAL-101 326 chr2R 11207818 11207842 chr2R 11208010 11208034 BS 5 191 4.0 1.5 2.8 1.3 216 chr2R 11207818 intron shn + chr2R 11207926 intron shn + chr2R 11208034 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-101 327 chr2R 11297631 11297650 chr2R 11301949 11301969 flea 7 4320 3.0 3.5 3.2 1.7 4338 chr2R 11297631 intergenic CG42336 - chr2R 11299800 intergenic not near genes chr2R 11301969 5` UTR CG7741 + chr2R_7_11295001 chr2R_11295001 RAL-101 328 chr2R 11366165 11366175 chr2R 11366244 11366251 4 78 6.5 5.5 6.0 0.6 86 chr2R 11366165 intergenic not near genes chr2R 11366208 intergenic not near genes chr2R 11366251 intergenic CG13204 + chr2R_4_11365001 chr2R_11365001 RAL-101 329 chr2R 11415532 11415550 chr2R 11418680 11418699 opus 6 3148 1.0 3.5 2.2 1.9 3167 chr2R 11415532 intron Drip - chr2R 11417116 intron Drip - chr2R 11418699 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-101 330 chr2R 11419874 11419897 chr2R 11420004 11420027 7 130 1.5 1.5 1.5 2.8 153 chr2R 11419874 intron Drip - chr2R 11419950 intron Drip - chr2R 11420027 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-101 331 chr2R 11472647 11472674 chr2R 11473844 11473871 pogo 9 1196 6.0 2.5 4.2 1.7 1224 chr2R 11472647 intergenic not near genes chr2R 11473259 intergenic not near genes chr2R 11473871 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-101 332 chr2R 11681498 11681527 chr2R 11683990 11684020 5 2493 6.5 9.5 8.0 0.6 2522 chr2R 11681498 intron Buffy + chr2R 11682759 intron Buffy + chr2R 11684020 intron Buffy + chr2R_5_11680001 chr2R_11680001 RAL-101 333 chr2R 11899336 11899362 chr2R 11899413 11899439 4 77 4.0 0.0 2.0 1.3 103 chr2R 11899336 intron MCPH1 - chr2R 11899388 intron MCPH1 - chr2R 11899439 intron MCPH1 - chr2R_4_11895001 chr2R_11895001 RAL-101 334 chr2R 11945496 11945506 chr2R 11945782 11945793 4 287 1.5 2.0 1.8 1.4 297 chr2R 11945496 intron CG13188 + chr2R 11945644 intron CG13188 + chr2R 11945793 intron CG13188 + chr2R_4_11945001 chr2R_11945001 RAL-101 335 chr2R 12187471 12187508 chr2R 12190087 12190124 42 2619 96.5 57.5 77.0 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_42_12185001 chr2R_12185001 RAL-101 336 chr2R 12217591 12217601 chr2R 12217665 12217682 4 78 1.5 2.5 2.0 1.3 91 chr2R 12217591 intergenic not near genes chr2R 12217636 intergenic not near genes chr2R 12217682 intergenic not near genes chr2R_4_12215001 chr2R_12215001 RAL-101 337 chr2R 12238079 12238098 chr2R 12238180 12238198 4 101 0.5 3.0 1.8 1.4 119 chr2R 12238079 intergenic not near genes chr2R 12238138 intergenic not near genes chr2R 12238198 intergenic not near genes chr2R_4_12235001 chr2R_12235001 RAL-101 338 chr2R 12363386 12363414 chr2R 12363817 12363846 8 431 1.5 3.0 2.2 2.5 460 chr2R 12363386 intergenic CG30043 + chr2R 12363616 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_8_12360001 chr2R_12360001 RAL-101 339 chr2R 12481145 12481166 chr2R 12482938 12482950 roo 5 1792 1.5 1.5 1.5 2.0 1805 chr2R 12481145 exon Dh44-R2 + chr2R 12482048 intron Dh44-R2 + chr2R 12482950 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-101 340 chr2R 12501689 12501721 chr2R 12503851 12503869 Rt1c 6 2159 2.0 3.0 2.5 1.7 2180 chr2R 12501689 intron fdl - chr2R 12502779 intron fdl - chr2R 12503869 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-101 341 chr2R 12819450 12819471 chr2R 12824526 12824548 jockey 7 5075 2.5 3.0 2.8 1.8 5098 chr2R 12819450 intergenic not near genes chr2R 12821999 intergenic not near genes chr2R 12824548 intergenic not near genes chr2R_7_12820001 chr2R_12820001 RAL-101 342 chr2R 12844718 12844734 chr2R 12844809 12844825 5 90 1.0 3.0 2.0 1.7 107 chr2R 12844718 intergenic Or49b + chr2R 12844772 intergenic Or49b + chr2R 12844825 intergenic Or49b + chr2R_5_12840001 chr2R_12840001 RAL-101 343 chr2R 13136837 13136863 chr2R 13141635 13141661 Doc 6 4798 4.0 3.5 3.8 1.2 4824 chr2R 13136837 exon Cap-G + chr2R 13139249 intron Cap-G + chr2R 13141661 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-101 344 chr2R 13244759 13244773 chr2R 13245049 13245065 4 292 2.0 4.0 3.0 1.0 306 chr2R 13244759 3` UTR CR45278 - chr2R 13244912 3` UTR CR45278 - chr2R 13245065 intergenic CR45278 - chr2R_4_13240001 chr2R_13240001 RAL-101 345 chr2R 13309660 13309672 chr2R 13309778 13309790 4 118 2.0 0.0 1.0 2.0 130 chr2R 13309660 intergenic not near genes chr2R 13309725 intergenic not near genes chr2R 13309790 intergenic not near genes chr2R_4_13305001 chr2R_13305001 RAL-101 346 chr2R 13431497 13431520 chr2R 13431576 13431599 5 79 3.0 1.5 2.2 1.6 102 chr2R 13431497 intron CG42321 - chr2R 13431548 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-101 347 chr2R 13438861 13438892 chr2R 13440179 13440210 12 1320 6.0 30.0 18.0 0.6 1349 chr2R 13438861 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440210 exon cnn - chr2R_12_13435001 chr2R_13435001 RAL-101 348 chr2R 13464473 13464495 chr2R 13464604 13464626 12 131 5.0 2.5 3.8 2.5 153 chr2R 13464473 intron arr - chr2R 13464550 intron arr - chr2R 13464626 intron arr - chr2R_12_13460001 chr2R_13460001 RAL-101 349 chr2R 13547082 13547098 chr2R 13547277 13547293 4 195 1.5 0.5 1.0 2.0 211 chr2R 13547082 intron CG6145 - chr2R 13547188 intron CG6145 - chr2R 13547293 intron CG6145 - chr2R_4_13545001 chr2R_13545001 RAL-101 350 chr2R 13584463 13584495 chr2R 13584551 13584580 10 86 1.5 4.5 3.0 2.5 117 chr2R 13584463 intron,intron CG6191 -,CG45088 - chr2R 13584522 intron,intron CG6191 -,CG45088 - chr2R 13584580 intron,intron CG6191 -,CG45088 - chr2R_10_13580001 chr2R_13580001 RAL-101 351 chr2R 13608272 13608292 chr2R 13608356 13608373 6 84 3.5 4.0 3.8 1.2 101 chr2R 13608272 intergenic CG12464 - chr2R 13608322 intergenic CG12464 - chr2R 13608373 intergenic CG12464 - chr2R_6_13605001 chr2R_13605001 RAL-101 352 chr2R 13648727 13648752 chr2R 13649155 13649181 5 427 0.5 3.5 2.0 1.7 454 chr2R 13648727 intron fas + chr2R 13648954 intron fas + chr2R 13649181 intron fas + chr2R_5_13645001 chr2R_13645001 RAL-101 353 chr2R 13697665 13697690 chr2R 13697745 13697769 9 77 4.0 2.0 3.0 2.2 104 chr2R 13697665 intron fas + chr2R 13697717 intron fas + chr2R 13697769 intron fas + chr2R_9_13695001 chr2R_13695001 RAL-101 354 chr2R 13721205 13721221 chr2R 13721287 13721288 5 77 5.0 4.0 4.5 0.9 83 chr2R 13721205 intron fas + chr2R 13721246 intron fas + chr2R 13721288 intron fas + chr2R_5_13720001 chr2R_13720001 RAL-101 355 chr2R 13762175 13762204 chr2R 13762284 13762314 4 110 2.5 0.5 1.5 1.6 139 chr2R 13762175 intergenic not near genes chr2R 13762244 intergenic not near genes chr2R 13762314 intergenic not near genes chr2R_4_13760001 chr2R_13760001 RAL-101 356 chr2R 13854950 13854980 chr2R 13855235 13855264 7 285 3.0 2.0 2.5 2.0 314 chr2R 13854950 intron,intron CG6553 -,CR44367 + chr2R 13855107 exon,5` UTR CG6553 -,CR44367 + chr2R 13855264 exon,5` UTR CG6553 -,CR44367 + chr2R_7_13855001 chr2R_13855001 RAL-101 357 chr2R 13905600 13905633 chr2R 13907582 13907615 Rt1a 8 1981 3.0 5.0 4.0 1.6 2015 chr2R 13905600 intron shot - chr2R 13906608 intron shot - chr2R 13907615 intron shot - chr2R_8_13905001 chr2R_13905001 RAL-101 358 chr2R 14076165 14076195 chr2R 14076246 14076278 6 84 4.0 2.0 3.0 1.5 113 chr2R 14076165 intron Prosap - chr2R 14076222 intron Prosap - chr2R 14076278 intron Prosap - chr2R_6_14075001 chr2R_14075001 RAL-101 359 chr2R 14175987 14175999 chr2R 14176294 14176309 4 309 2.5 3.0 2.8 1.1 322 chr2R 14175987 intron cg + chr2R 14176148 intron cg + chr2R 14176309 intron cg + chr2R_4_14175001 chr2R_14175001 RAL-101 360 chr2R 14467313 14467324 chr2R 14476471 14476482 roo 5 9158 2.5 1.0 1.8 1.8 9169 chr2R 14467313 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-101 361 chr2R 14565561 14565582 chr2R 14565637 14565659 8 77 4.0 2.0 3.0 2.0 98 chr2R 14565561 intron ttv + chr2R 14565610 intron ttv + chr2R 14565659 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-101 362 chr2R 14922148 14922171 chr2R 14922224 14922247 6 75 10.0 9.0 9.5 0.6 99 chr2R 14922148 intron CG10249 - chr2R 14922198 intron CG10249 - chr2R 14922247 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-101 363 chr2R 15015468 15015482 chr2R 15022892 15022906 mdg1 6 7424 4.0 2.5 3.2 1.4 7438 chr2R 15015468 intron hbs + chr2R 15019187 intron hbs + chr2R 15022906 intron hbs + chr2R_6_15015001 chr2R_15015001 RAL-101 364 chr2R 15051091 15051329 chr2R 15051173 15051407 4 80 3.5 4.5 4.0 0.8 316 chr2R 15051091 intergenic not near genes chr2R 15051249 intergenic not near genes chr2R 15051407 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-101 365 chr2R 15058191 15058200 chr2R 15058323 15058332 5 132 4.0 5.5 4.8 0.9 141 chr2R 15058191 intergenic not near genes chr2R 15058262 intergenic not near genes chr2R 15058332 intergenic not near genes chr2R_5_15055001 chr2R_15055001 RAL-101 366 chr2R 15065634 15065649 chr2R 15065694 15065727 5 66 5.5 5.5 5.5 0.8 93 chr2R 15065634 intergenic not near genes chr2R 15065680 intergenic not near genes chr2R 15065727 intergenic not near genes chr2R_5_15065001 chr2R_15065001 RAL-101 367 chr2R 15084979 15085007 chr2R 15092028 15092056 297 9 7049 4.0 3.5 3.8 1.9 7077 chr2R 15084979 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_9_15085001 chr2R_15085001 RAL-101 368 chr2R 15119319 15119351 chr2R 15127797 15127832 Tirant 6 8478 5.0 1.0 3.0 1.5 8513 chr2R 15119319 intron chn + chr2R 15123576 intron chn + chr2R 15127832 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-101 369 chr2R 15273131 15273146 chr2R 15273211 15273226 4 80 5.5 3.5 4.5 0.7 95 chr2R 15273131 intron Trpm - chr2R 15273178 intron Trpm - chr2R 15273226 intron Trpm - chr2R_4_15270001 chr2R_15270001 RAL-101 370 chr2R 15421191 15421204 chr2R 15421281 15421294 5 90 1.5 2.0 1.8 1.8 103 chr2R 15421191 intron CG43729 + chr2R 15421242 intron CG43729 + chr2R 15421294 intron CG43729 + chr2R_5_15420001 chr2R_15420001 RAL-101 371 chr2R 15612350 15612370 chr2R 15612428 15612452 4 81 11.5 11.0 11.2 0.3 102 chr2R 15612350 intergenic not near genes chr2R 15612401 intergenic not near genes chr2R 15612452 intergenic not near genes chr2R_4_15610001 chr2R_15610001 RAL-101 372 chr2R 15639158 15639173 chr2R 15639288 15639303 4 130 5.0 2.5 3.8 0.8 145 chr2R 15639158 intron CG42524 + chr2R 15639230 intron CG42524 + chr2R 15639303 intron CG42524 + chr2R_4_15635001 chr2R_15635001 RAL-101 373 chr2R 15655996 15656013 chr2R 15656076 15656092 5 79 4.5 5.5 5.0 0.8 96 chr2R 15655996 intron CG42524 + chr2R 15656044 intron CG42524 + chr2R 15656092 intron CG42524 + chr2R_5_15655001 chr2R_15655001 RAL-101 374 chr2R 15786514 15786532 chr2R 15786672 15786690 8 158 4.0 10.0 7.0 1.0 176 chr2R 15786514 intron Zasp52 - chr2R 15786602 intron Zasp52 - chr2R 15786690 intron Zasp52 - chr2R_8_15785001 chr2R_15785001 RAL-101 375 chr2R 15902898 15902909 chr2R 15902953 15902964 4 66 2.0 2.0 2.0 1.3 66 chr2R 15902898 intron sli - chr2R 15902931 intron sli - chr2R 15902964 intron sli - chr2R_4_15900001 chr2R_15900001 RAL-101 376 chr2R 16474343 16474372 chr2R 16474427 16474458 11 82 2.5 1.5 2.0 3.7 115 chr2R 16474343 intergenic not near genes chr2R 16474400 intergenic not near genes chr2R 16474458 intergenic not near genes chr2R_11_16470001 chr2R_16470001 RAL-101 377 chr2R 16547010 16547033 chr2R 16547086 16547113 4 79 0.0 0.0 0.0 4.0 103 chr2R 16547010 intergenic not near genes chr2R 16547062 intergenic not near genes chr2R 16547113 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-101 378 chr2R 16617059 16617078 chr2R 16617138 16617157 6 79 3.5 0.5 2.0 2.0 98 chr2R 16617059 intron CG5065 + chr2R 16617108 intron CG5065 + chr2R 16617157 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-101 379 chr2R 16618727 16618741 chr2R 16618811 16618825 5 84 0.0 2.0 1.0 2.5 98 chr2R 16618727 intron CG5065 + chr2R 16618776 intron CG5065 + chr2R 16618825 5` UTR CG5065 + chr2R_5_16615001 chr2R_16615001 RAL-101 380 chr2R 16689156 16689173 chr2R 16689485 16689502 10 328 5.5 3.5 4.5 1.8 346 chr2R 16689156 intron CG30463 - chr2R 16689329 intron CG30463 - chr2R 16689502 intron CG30463 - chr2R_10_16685001 chr2R_16685001 RAL-101 381 chr2R 16844944 16844965 chr2R 16845240 16845261 6 296 4.0 1.5 2.8 1.6 317 chr2R 16844944 5` UTR Ugt37c1 - chr2R 16845102 intergenic Ugt37c1 -,CR44466 + chr2R 16845261 intergenic Ugt37c1 -,CR44466 + chr2R_6_16845001 chr2R_16845001 RAL-101 382 chr2R 16918107 16918128 chr2R 16918573 16918603 6 473 1.0 0.5 0.8 3.3 496 chr2R 16918107 intergenic not near genes chr2R 16918355 intergenic not near genes chr2R 16918603 intergenic not near genes chr2R_6_16915001 chr2R_16915001 RAL-101 383 chr2R 17147244 17147258 chr2R 17152275 17152289 jockey 4 5031 4.0 6.0 5.0 0.7 5045 chr2R 17147244 intergenic not near genes chr2R 17149766 intergenic not near genes chr2R 17152289 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-101 384 chr2R 17236508 17236538 chr2R 17241712 17241742 copia 8 5204 3.0 3.5 3.2 1.9 5234 chr2R 17236508 intron mbl + chr2R 17239125 intron mbl + chr2R 17241742 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-101 385 chr2R 17389266 17389302 chr2R 17389357 17389393 10 88 3.0 3.0 3.0 2.5 127 chr2R 17389266 intergenic CR44344 - chr2R 17389330 intergenic CR44344 - chr2R 17389393 intergenic CR44344 - chr2R_10_17385001 chr2R_17385001 RAL-101 386 chr2R 17459019 17459038 chr2R 17459104 17459123 4 85 2.0 3.0 2.5 1.1 104 chr2R 17459019 intron CG14478 + chr2R 17459071 intron CG14478 + chr2R 17459123 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-101 387 chr2R 17485912 17485933 chr2R 17490674 17490695 F-element 5 4762 1.0 0.5 0.8 2.8 4783 chr2R 17485912 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488304 intron NT5E-2 + chr2R 17490695 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-101 388 chr2R 17616981 17617015 chr2R 17617059 17617093 8 78 3.0 2.0 2.5 2.3 112 chr2R 17616981 intron,3` UTR CG10936 -,CG44403 - chr2R 17617037 intron,3` UTR CG10936 -,CG44403 - chr2R 17617093 intron,3` UTR CG10936 -,CG44403 - chr2R_8_17615001 chr2R_17615001 RAL-101 389 chr2R 17627748 17627784 chr2R 17628075 17628111 18 326 1.0 2.0 1.5 7.2 363 chr2R 17627748 intron CG10936 - chr2R 17627930 intron CG10936 - chr2R 17628111 intron CG10936 - chr2R_18_17625001 chr2R_17625001 RAL-101 390 chr2R 17655209 17655224 chr2R 17655284 17655298 4 75 2.5 5.0 3.8 0.8 89 chr2R 17655209 intron CCHa1-R - chr2R 17655254 intron CCHa1-R - chr2R 17655298 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-101 391 chr2R 17697176 17697179 chr2R 17697254 17697257 4 78 0.5 0.0 0.2 3.3 81 chr2R 17697176 intron rdgBbeta - chr2R 17697216 intron rdgBbeta - chr2R 17697257 intron rdgBbeta - chr2R_4_17695001 chr2R_17695001 RAL-101 392 chr2R 17875748 17875777 chr2R 17877193 17877223 4 1450 13.5 13.0 13.2 0.3 1475 chr2R 17875748 intron Elk + chr2R 17876486 intron Elk + chr2R 17877223 intron Elk + chr2R_4_17875001 chr2R_17875001 RAL-101 393 chr2R 17885111 17885119 chr2R 17885205 17885213 4 94 1.0 0.5 0.8 2.2 102 chr2R 17885111 intron Elk + chr2R 17885162 intron Elk + chr2R 17885213 intron Elk + chr2R_4_17885001 chr2R_17885001 RAL-101 394 chr2R 17937522 17937550 chr2R 17937602 17937630 9 80 0.5 2.5 1.5 3.6 108 chr2R 17937522 intergenic not near genes chr2R 17937576 intergenic not near genes chr2R 17937630 intergenic not near genes chr2R_9_17935001 chr2R_17935001 RAL-101 395 chr2R 17997075 17997085 chr2R 17997183 17997193 8 108 15.5 9.5 12.5 0.6 118 chr2R 17997075 intron dpr13 - chr2R 17997134 intron dpr13 - chr2R 17997193 intron dpr13 - chr2R_8_17995001 chr2R_17995001 RAL-101 396 chr2R 18021546 18021550 chr2R 18022033 18022037 5 488 9.0 11.0 10.0 0.5 491 chr2R 18021546 exon CG10910 + chr2R 18021792 exon CG10910 + chr2R 18022037 exon CG10910 + chr2R_5_18020001 chr2R_18020001 RAL-101 397 chr2R 18035411 18035433 chr2R 18035487 18035500 16 75 2.5 2.5 2.5 4.6 89 chr2R 18035411 intergenic not near genes chr2R 18035456 intergenic not near genes chr2R 18035500 intergenic not near genes chr2R_16_18035001 chr2R_18035001 RAL-101 398 chr2R 18144845 18144854 chr2R 18144967 18144975 4 121 19.0 17.5 18.2 0.2 130 chr2R 18144845 exon pAbp + chr2R 18144910 intron pAbp + chr2R 18144975 exon pAbp + chr2R_4_18140001 chr2R_18140001 RAL-101 399 chr2R 18255697 18255704 chr2R 18255911 18255918 4 214 0.5 1.5 1.0 2.0 221 chr2R 18255697 intergenic not near genes chr2R 18255808 intergenic not near genes chr2R 18255918 intergenic not near genes chr2R_4_18255001 chr2R_18255001 RAL-101 400 chr2R 18263319 18263353 chr2R 18263404 18263439 16 84 1.5 5.0 3.2 3.8 120 chr2R 18263319 intergenic not near genes chr2R 18263379 intergenic not near genes chr2R 18263439 intergenic not near genes chr2R_16_18260001 chr2R_18260001 RAL-101 401 chr2R 18323807 18323841 chr2R 18323900 18323934 12 92 0.0 3.5 1.8 4.3 127 chr2R 18323807 intron sbb - chr2R 18323870 intron sbb - chr2R 18323934 intron sbb - chr2R_12_18320001 chr2R_18320001 RAL-101 402 chr2R 18358402 18358414 chr2R 18372613 18372626 roo 5 14212 2.5 5.0 3.8 1.0 14224 chr2R 18358402 intergenic not near genes chr2R 18365514 intergenic not near genes chr2R 18372626 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-101 403 chr2R 18376727 18376762 chr2R 18376817 18376851 5 90 2.0 3.5 2.8 1.3 124 chr2R 18376727 intergenic not near genes chr2R 18376789 intergenic not near genes chr2R 18376851 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-101 404 chr2R 18407403 18407436 chr2R 18407758 18407791 13 352 2.5 2.5 2.5 3.7 388 chr2R 18407403 exon GstE7 + chr2R 18407597 exon GstE7 + chr2R 18407791 intergenic GstE8 +,GstE7 + chr2R_13_18405001 chr2R_18405001 RAL-101 405 chr2R 18408280 18408310 chr2R 18408401 18408431 11 121 4.5 3.5 4.0 2.2 151 chr2R 18408280 exon GstE8 + chr2R 18408356 exon GstE8 + chr2R 18408431 exon GstE8 + chr2R_11_18405001 chr2R_18405001 RAL-101 406 chr2R 18432205 18432232 chr2R 18432287 18432314 5 80 1.5 2.5 2.0 1.7 109 chr2R 18432205 intron CG30118 - chr2R 18432260 intron CG30118 - chr2R 18432314 intron CG30118 - chr2R_5_18430001 chr2R_18430001 RAL-101 407 chr2R 18473263 18473280 chr2R 18473339 18473364 9 80 4.0 1.0 2.5 2.6 101 chr2R 18473263 intron CG30116 - chr2R 18473314 intron CG30116 - chr2R 18473364 intron CG30116 - chr2R_9_18470001 chr2R_18470001 RAL-101 408 chr2R 18479052 18479084 chr2R 18479131 18479162 7 79 5.5 1.0 3.2 1.7 110 chr2R 18479052 intron CG30116 - chr2R 18479107 intron CG30116 - chr2R 18479162 intron CG30116 - chr2R_7_18475001 chr2R_18475001 RAL-101 409 chr2R 18483028 18483056 chr2R 18483265 18483268 6 230 0.5 2.0 1.2 2.7 240 chr2R 18483028 intron CG30116 - chr2R 18483148 intron CG30116 - chr2R 18483268 intron CG30116 - chr2R_6_18480001 chr2R_18480001 RAL-101 410 chr2R 18575813 18575821 chr2R 18582001 18582003 3S18 5 6186 1.5 5.0 3.2 1.2 6190 chr2R 18575813 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582003 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-101 411 chr2R 18590866 18590901 chr2R 18600018 18600053 roo 7 9151 4.5 4.5 4.5 1.3 9187 chr2R 18590866 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-101 412 chr2R 18646413 18646436 chr2R 18646556 18646581 4 144 0.0 1.0 0.5 2.7 168 chr2R 18646413 intron SP2637 - chr2R 18646497 intron SP2637 - chr2R 18646581 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-101 413 chr2R 18806705 18806721 chr2R 18806781 18806797 7 75 0.5 0.5 0.5 4.7 92 chr2R 18806705 5` UTR CR44468 + chr2R 18806751 5` UTR CR44468 + chr2R 18806797 5` UTR CR44468 + chr2R_7_18805001 chr2R_18805001 RAL-101 414 chr2R 18943619 18943635 chr2R 18943735 18943751 4 114 3.0 3.0 3.0 1.0 132 chr2R 18943619 intron sano + chr2R 18943685 intron sano + chr2R 18943751 intron sano + chr2R_4_18940001 chr2R_18940001 RAL-101 415 chr2R 18953163 18953187 chr2R 18953250 18953274 11 87 1.5 0.0 0.8 6.1 111 chr2R 18953163 intron sano + chr2R 18953218 intron sano + chr2R 18953274 intron sano + chr2R_11_18950001 chr2R_18950001 RAL-101 416 chr2R 19006703 19006717 chr2R 19006786 19006801 4 83 0.0 1.5 0.8 2.2 98 chr2R 19006703 intron tn + chr2R 19006752 intron tn + chr2R 19006801 intron tn + chr2R_4_19005001 chr2R_19005001 RAL-101 417 chr2R 19015434 19015454 chr2R 19015520 19015542 4 87 4.5 2.0 3.2 1.0 108 chr2R 19015434 intergenic not near genes chr2R 19015488 intergenic not near genes chr2R 19015542 intergenic not near genes chr2R_4_19015001 chr2R_19015001 RAL-101 418 chr2R 19331508 19331530 chr2R 19331701 19331732 5 199 1.5 1.0 1.2 2.3 224 chr2R 19331508 intron,intron Rgk1 -,CG34045 + chr2R 19331620 intron,intron Rgk1 -,CG34045 + chr2R 19331732 intron,intron Rgk1 -,CG34045 + chr2R_5_19330001 chr2R_19330001 RAL-101 419 chr2R 19702721 19702748 chr2R 19702794 19702825 5 73 3.0 3.5 3.2 1.2 104 chr2R 19702721 intergenic Obp56d - chr2R 19702773 intergenic Obp56d - chr2R 19702825 intergenic Obp56d - chr2R_5_19700001 chr2R_19700001 RAL-101 420 chr2R 19774564 19774592 chr2R 19774643 19774665 6 80 2.0 2.0 2.0 2.0 101 chr2R 19774564 intergenic not near genes chr2R 19774614 intergenic not near genes chr2R 19774665 intergenic not near genes chr2R_6_19770001 chr2R_19770001 RAL-101 421 chr2R 19776598 19776621 chr2R 19779915 19779944 jockey 7 3321 2.0 1.0 1.5 2.8 3346 chr2R 19776598 intergenic not near genes chr2R 19778271 intergenic not near genes chr2R 19779944 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-101 422 chr2R 19807679 19807699 chr2R 19807761 19807781 7 82 2.0 1.0 1.5 2.8 102 chr2R 19807679 intergenic not near genes chr2R 19807730 intergenic not near genes chr2R 19807781 intergenic not near genes chr2R_7_19805001 chr2R_19805001 RAL-101 423 chr2R 19914843 19914858 chr2R 19922255 19922270 mdg1 4 7412 2.5 1.5 2.0 1.3 7427 chr2R 19914843 intergenic not near genes chr2R 19918556 intergenic not near genes chr2R 19922270 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-101 424 chr2R 19957439 19957464 chr2R 19962631 19962663 copia 7 5196 2.0 2.0 2.0 2.3 5224 chr2R 19957439 intergenic CG44623 + chr2R 19960051 intergenic not near genes chr2R 19962663 intergenic not near genes chr2R_7_19960001 chr2R_19960001 RAL-101 425 chr2R 19985669 19985687 chr2R 19985804 19985823 4 136 4.0 1.5 2.8 1.1 154 chr2R 19985669 intergenic not near genes chr2R 19985746 intergenic not near genes chr2R 19985823 intergenic not near genes chr2R_4_19985001 chr2R_19985001 RAL-101 426 chr2R 20069242 20069260 chr2R 20071872 20071890 opus 5 2630 4.0 1.5 2.8 1.3 2648 chr2R 20069242 intergenic not near genes chr2R 20070566 intergenic not near genes chr2R 20071890 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-101 427 chr2R 20320718 20320738 chr2R 20320794 20320814 6 76 4.0 5.0 4.5 1.1 96 chr2R 20320718 intron CG8920 + chr2R 20320766 intron CG8920 + chr2R 20320814 intron CG8920 + chr2R_6_20320001 chr2R_20320001 RAL-101 428 chr2R 20405087 20405111 chr2R 20406002 20406020 11 914 4.0 3.5 3.8 2.3 933 chr2R 20405087 intergenic not near genes chr2R 20405554 intergenic not near genes chr2R 20406020 intergenic not near genes chr2R_11_20405001 chr2R_20405001 RAL-101 429 chr2R 20449239 20449253 chr2R 20449315 20449329 6 76 1.0 4.5 2.8 1.6 90 chr2R 20449239 intron CG12484 + chr2R 20449284 intron CG12484 + chr2R 20449329 intron CG12484 + chr2R_6_20445001 chr2R_20445001 RAL-101 430 chr2R 20506224 20506239 chr2R 20506324 20506345 4 102 5.0 4.0 4.5 0.7 121 chr2R 20506224 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506284 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506345 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_4_20505001 chr2R_20505001 RAL-101 431 chr2R 20690758 20690787 chr2R 20690834 20690841 7 69 3.5 3.0 3.2 1.7 83 chr2R 20690758 intergenic not near genes chr2R 20690800 intergenic not near genes chr2R 20690841 intergenic not near genes chr2R_7_20690001 chr2R_20690001 RAL-101 432 chr2R 20739440 20739476 chr2R 20744208 20744244 F-element 8 4767 2.5 2.5 2.5 2.3 4804 chr2R 20739440 intron dpr + chr2R 20741842 intron dpr + chr2R 20744244 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-101 433 chr2R 21056685 21056717 chr2R 21056765 21056798 17 79 4.0 4.0 4.0 3.4 113 chr2R 21056685 5` UTR shg - chr2R 21056742 5` UTR shg - chr2R 21056798 5` UTR shg - chr2R_17_21055001 chr2R_21055001 RAL-101 434 chr2R 21075684 21075707 chr2R 21075771 21075794 8 87 2.0 1.5 1.8 2.9 110 chr2R 21075684 intron Treh + chr2R 21075739 intron Treh + chr2R 21075794 intron Treh + chr2R_8_21075001 chr2R_21075001 RAL-101 435 chr2R 21141118 21141143 chr2R 21141214 21141238 14 96 2.0 1.0 1.5 5.6 120 chr2R 21141118 intron Magi - chr2R 21141178 intron Magi - chr2R 21141238 intron Magi - chr2R_14_21140001 chr2R_21140001 RAL-101 436 chr2R 21344449 21344468 chr2R 21344534 21344553 4 85 3.0 5.5 4.2 0.8 104 chr2R 21344449 exon CG15666 + chr2R 21344501 intron CG15666 + chr2R 21344553 intron CG15666 + chr2R_4_21340001 chr2R_21340001 RAL-101 437 chr2R 21370517 21370537 chr2R 21370624 21370644 4 107 0.5 0.0 0.2 3.3 127 chr2R 21370517 intron cv-2 - chr2R 21370580 intron cv-2 - chr2R 21370644 intron cv-2 - chr2R_4_21370001 chr2R_21370001 RAL-101 438 chr2R 21408370 21408408 chr2R 21408461 21408500 10 91 1.5 0.0 0.8 5.6 130 chr2R 21408370 intron Sdc - chr2R 21408435 intron Sdc - chr2R 21408500 intron Sdc - chr2R_10_21405001 chr2R_21405001 RAL-101 439 chr2R 21429940 21429972 chr2R 21430018 21430050 10 78 0.5 1.5 1.0 5.0 110 chr2R 21429940 intron Sdc - chr2R 21429995 intron Sdc - chr2R 21430050 intron Sdc - chr2R_10_21425001 chr2R_21425001 RAL-101 440 chr2R 21472317 21472337 chr2R 21472395 21472415 6 78 3.5 3.5 3.5 1.3 98 chr2R 21472317 intron Sdc - chr2R 21472366 intron Sdc - chr2R 21472415 intron Sdc - chr2R_6_21470001 chr2R_21470001 RAL-101 441 chr2R 21660544 21660573 chr2R 21660677 21660701 6 132 1.5 3.0 2.2 1.9 157 chr2R 21660544 intergenic pirk - chr2R 21660622 intergenic pirk - chr2R 21660701 intergenic pirk - chr2R_6_21660001 chr2R_21660001 RAL-101 442 chr2R 21738282 21738311 chr2R 21747442 21747471 roo 4 9158 1.0 3.0 2.0 1.3 9189 chr2R 21738282 intergenic not near genes chr2R 21742876 intergenic not near genes chr2R 21747471 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-101 443 chr2R 21753087 21753116 chr2R 21753568 21753601 roo 5 479 2.0 2.5 2.2 1.6 514 chr2R 21753087 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-101 444 chr2R 21857350 21857363 chr2R 21857441 21857450 4 90 3.5 3.0 3.2 1.0 100 chr2R 21857350 intergenic not near genes chr2R 21857400 intergenic not near genes chr2R 21857450 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-101 445 chr2R 21906272 21906301 chr2R 21906373 21906402 8 101 0.0 2.0 1.0 4.0 130 chr2R 21906272 intron Fili + chr2R 21906337 intron Fili + chr2R 21906402 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-101 446 chr2R 21919877 21919898 chr2R 21919961 21919986 4 87 2.5 1.0 1.8 1.4 109 chr2R 21919877 intron Fili + chr2R 21919932 intron Fili + chr2R 21919986 intron Fili + chr2R_4_21915001 chr2R_21915001 RAL-101 447 chr2R 22012989 22013011 chr2R 22013082 22013104 4 93 0.5 0.5 0.5 2.7 115 chr2R 22012989 intron CG34370 - chr2R 22013046 intron CG34370 - chr2R 22013104 intron CG34370 - chr2R_4_22010001 chr2R_22010001 RAL-101 448 chr2R 22033832 22033857 chr2R 22033918 22033935 4 84 0.5 5.5 3.0 1.0 103 chr2R 22033832 intron CG34370 - chr2R 22033884 intron CG34370 - chr2R 22033935 intron CG34370 - chr2R_4_22030001 chr2R_22030001 RAL-101 449 chr2R 22035548 22035576 chr2R 22035633 22035662 4 86 0.5 2.5 1.5 1.6 114 chr2R 22035548 intron,3` UTR CG34370 -,CG9308 + chr2R 22035605 intron,3` UTR CG34370 -,CG9308 + chr2R 22035662 intron,3` UTR CG34370 -,CG9308 + chr2R_4_22035001 chr2R_22035001 RAL-101 450 chr2R 22185692 22185704 chr2R 22185785 22185803 5 98 2.0 1.5 1.8 1.8 111 chr2R 22185692 3` UTR MED16 + chr2R 22185748 3` UTR MED16 + chr2R 22185803 3` UTR MED16 + chr2R_5_22185001 chr2R_22185001 RAL-101 451 chr2R 22272083 22272103 chr2R 22272185 22272205 4 101 4.0 4.0 4.0 0.8 122 chr2R 22272083 intron dve + chr2R 22272144 intron dve + chr2R 22272205 intron dve + chr2R_4_22270001 chr2R_22270001 RAL-101 452 chr2R 22349692 22349721 chr2R 22351473 22351504 jockey 13 1783 2.5 0.5 1.5 5.2 1812 chr2R 22349692 intron Liprin-gamma - chr2R 22350598 intron Liprin-gamma - chr2R 22351504 intron Liprin-gamma - chr2R_13_22350001 chr2R_22350001 RAL-101 453 chr2R 22359720 22359725 chr2R 22360103 22360125 4 396 3.0 3.0 3.0 1.0 405 chr2R 22359720 intron Liprin-gamma - chr2R 22359922 intron Liprin-gamma - chr2R 22360125 intron Liprin-gamma - chr2R_4_22355001 chr2R_22355001 RAL-101 454 chr2R 22360383 22360415 chr2R 22360816 22360830 jockey 5 428 1.5 2.5 2.0 1.7 447 chr2R 22360383 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-101 455 chr2R 22525748 22525783 chr2R 22529303 22529338 jockey 5 3555 0.0 1.5 0.8 2.8 3590 chr2R 22525748 intron px - chr2R 22527543 intron px - chr2R 22529338 intron px - chr2R_5_22525001 chr2R_22525001 RAL-101 456 chr2R 22575660 22575696 chr2R 22575738 22575775 4 78 0.5 2.5 1.5 1.6 115 chr2R 22575660 intron dnr1 - chr2R 22575718 intron dnr1 - chr2R 22575775 intron dnr1 - chr2R_4_22575001 chr2R_22575001 RAL-101 457 chr2R 22619172 22619183 chr2R 22619390 22619401 7 218 6.0 7.5 6.8 0.9 229 chr2R 22619172 intron CG33143 + chr2R 22619286 intron CG33143 + chr2R 22619401 intron CG33143 + chr2R_7_22615001 chr2R_22615001 RAL-101 458 chr2R 22619185 22619192 chr2R 22619389 22619410 6 215 3.5 7.0 5.2 1.0 225 chr2R 22619185 intron CG33143 + chr2R 22619298 intron CG33143 + chr2R 22619410 intron CG33143 + chr2R_6_22615001 chr2R_22615001 RAL-101 459 chr2R 22623454 22623477 chr2R 22623591 22623616 11 139 5.5 0.5 3.0 2.8 162 chr2R 22623454 intron CG33143 + chr2R 22623535 intron CG33143 + chr2R 22623616 intron CG33143 + chr2R_11_22620001 chr2R_22620001 RAL-101 460 chr2R 22664932 22664965 chr2R 22665012 22665043 6 80 2.0 1.0 1.5 2.4 111 chr2R 22664932 intergenic CG4250 + chr2R 22664988 intergenic not near genes chr2R 22665043 intergenic not near genes chr2R_6_22660001 chr2R_22660001 RAL-101 461 chr2R 22756554 22756584 chr2R 22756628 22756661 8 76 2.0 3.0 2.5 2.3 107 chr2R 22756554 intron,intron CG42260 -,CR30267 + chr2R 22756608 intron,intron CG42260 -,CR30267 + chr2R 22756661 intron,intron CG42260 -,CR30267 + chr2R_8_22755001 chr2R_22755001 RAL-101 462 chr2R 22774962 22774997 chr2R 22775381 22775416 jockey 12 418 3.5 0.0 1.8 4.3 454 chr2R 22774962 intron CG42260 - chr2R 22775189 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-101 463 chr2R 22843023 22843041 chr2R 22844984 22845003 flea 4 1962 4.5 1.5 3.0 1.0 1980 chr2R 22843023 intergenic CG9826 + chr2R 22844013 intergenic not near genes chr2R 22845003 intergenic not near genes chr2R_4_22840001 chr2R_22840001 RAL-101 464 chr2R 23061759 23061786 chr2R 23061835 23061862 4 75 1.5 3.0 2.2 1.2 103 chr2R 23061759 3` UTR l(2)06496 - chr2R 23061810 3` UTR l(2)06496 - chr2R 23061862 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-101 465 chr2R 23175043 23175067 chr2R 23175120 23175140 11 76 1.5 4.0 2.8 2.9 97 chr2R 23175043 intron CG34371 - chr2R 23175092 intron CG34371 - chr2R 23175140 intron CG34371 - chr2R_11_23175001 chr2R_23175001 RAL-101 466 chr2R 23257514 23257535 chr2R 23257595 23257618 4 82 0.0 2.5 1.2 1.8 104 chr2R 23257514 intergenic not near genes chr2R 23257566 intergenic not near genes chr2R 23257618 intergenic not near genes chr2R_4_23255001 chr2R_23255001 RAL-101 467 chr2R 23402615 23402642 chr2R 23407691 23407717 flea 5 5075 0.5 1.5 1.0 2.5 5102 chr2R 23402615 intergenic CG3520 - chr2R 23405166 intergenic not near genes chr2R 23407717 intergenic not near genes chr2R_5_23405001 chr2R_23405001 RAL-101 468 chr2R 23437204 23437226 chr2R 23437306 23437329 5 102 4.0 2.5 3.2 1.2 125 chr2R 23437204 intergenic not near genes chr2R 23437266 intergenic not near genes chr2R 23437329 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-101 469 chr2R 23522419 23522436 chr2R 23522496 23522515 6 77 4.5 1.5 3.0 1.5 96 chr2R 23522419 intron RabX1 - chr2R 23522467 intron RabX1 - chr2R 23522515 intron RabX1 - chr2R_6_23520001 chr2R_23520001 RAL-101 470 chr2R 23529574 23529605 chr2R 23537149 23537157 412 8 7563 2.0 2.0 2.0 2.7 7583 chr2R 23529574 intron bw - chr2R 23533366 intron bw - chr2R 23537157 exon bw - chr2R_8_23530001 chr2R_23530001 RAL-101 471 chr2R 23653972 23654004 chr2R 23654049 23654081 5 77 3.5 1.5 2.5 1.4 109 chr2R 23653972 3` UTR retn + chr2R 23654026 3` UTR retn + chr2R 23654081 3` UTR retn + chr2R_5_23650001 chr2R_23650001 RAL-101 472 chr2R 23914299 23914330 chr2R 23921923 23921925 412 9 7614 3.0 6.5 4.8 1.6 7626 chr2R 23914299 exon kcc + chr2R 23918112 intron kcc + chr2R 23921925 intron kcc + chr2R_9_23915001 chr2R_23915001 RAL-101 473 chr2R 23986422 23986450 chr2R 23986504 23986533 10 83 2.5 2.0 2.2 3.1 111 chr2R 23986422 intron Phm - chr2R 23986478 intron Phm - chr2R 23986533 intron Phm - chr2R_10_23985001 chr2R_23985001 RAL-101 474 chr2R 24031382 24031408 chr2R 24031463 24031492 6 84 2.5 2.0 2.2 1.9 110 chr2R 24031382 5` UTR CG30172 - chr2R 24031437 intergenic CG30172 -,Chi - chr2R 24031492 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-101 475 chr2R 24077944 24077955 chr2R 24078020 24078027 4 75 2.0 1.0 1.5 1.6 83 chr2R 24077944 3` UTR Mlp60A + chr2R 24077986 3` UTR Mlp60A + chr2R 24078027 3` UTR Mlp60A + chr2R_4_24075001 chr2R_24075001 RAL-101 476 chr2R 24147086 24147097 chr2R 24154664 24154675 412 5 7578 4.5 5.0 4.8 0.9 7589 chr2R 24147086 intron Dat + chr2R 24150880 intron Dat + chr2R 24154675 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-101 477 chr2R 24210402 24210433 chr2R 24210573 24210584 8 164 0.5 3.0 1.8 2.9 182 chr2R 24210402 intergenic not near genes chr2R 24210493 intergenic not near genes chr2R 24210584 intergenic not near genes chr2R_8_24210001 chr2R_24210001 RAL-101 478 chr2R 24243741 24243766 chr2R 24243843 24243852 6 99 1.0 1.0 1.0 3.0 111 chr2R 24243741 intron nord + chr2R 24243796 intron nord + chr2R 24243852 intron nord + chr2R_6_24240001 chr2R_24240001 RAL-101 479 chr2R 24353429 24353446 chr2R 24361791 24361808 roo 4 8362 2.5 3.5 3.0 1.0 8379 chr2R 24353429 intron,intron bs +,CR44811 - chr2R 24357618 intron,intron bs +,CR44811 - chr2R 24361808 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-101 480 chr2R 24430921 24430948 chr2R 24431009 24431036 4 88 0.0 2.0 1.0 2.0 115 chr2R 24430921 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431036 intergenic Pgam5-2 -,CG15873 - chr2R_4_24430001 chr2R_24430001 RAL-101 481 chr2R 24553632 24553647 chr2R 24553727 24553746 7 95 5.0 4.0 4.5 1.3 114 chr2R 24553632 intron,intron CG4622 -,ITP + chr2R 24553689 intron,intron CG4622 -,ITP + chr2R 24553746 intron,intron CG4622 -,ITP + chr2R_7_24550001 chr2R_24550001 RAL-101 482 chr2R 24553654 24553664 chr2R 24553725 24553763 4 92 3.0 4.0 3.5 0.9 109 chr2R 24553654 intron,intron CG4622 -,ITP + chr2R 24553708 intron,intron CG4622 -,ITP + chr2R 24553763 intron,intron CG4622 -,ITP + chr2R_4_24550001 chr2R_24550001 RAL-101 483 chr2R 24590102 24590144 chr2R 24590210 24590236 5 101 0.0 4.0 2.0 1.7 134 chr2R 24590102 intron pio + chr2R 24590169 intron pio + chr2R 24590236 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-101 484 chr2R 24592951 24592977 chr2R 24593044 24593070 5 93 5.0 1.5 3.2 1.2 119 chr2R 24592951 intron pio + chr2R 24593010 intron pio + chr2R 24593070 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-101 485 chr2R 24647588 24647611 chr2R 24655144 24655168 412 7 7554 3.0 2.5 2.8 1.8 7580 chr2R 24647588 intergenic not near genes chr2R 24651378 intergenic not near genes chr2R 24655168 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-101 486 chr2R 24727883 24727917 chr2R 24735391 24735425 mdg1 10 7505 6.0 3.5 4.8 1.7 7542 chr2R 24727883 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-101 487 chr2R 24763610 24763644 chr2R 24765586 24765612 G2 11 1975 5.5 0.5 3.0 2.8 2002 chr2R 24763610 exon CG3894 + chr2R 24764611 intron CG3894 + chr2R 24765612 exon CG3894 + chr2R_11_24760001 chr2R_24760001 RAL-101 488 chr2R 24768001 24768006 chr2R 24768085 24768089 4 85 4.0 1.0 2.5 1.1 88 chr2R 24768001 5` UTR GstE12 - chr2R 24768045 5` UTR GstE12 - chr2R 24768089 5` UTR GstE12 - chr2R_4_24765001 chr2R_24765001 RAL-101 489 chr2R 24859840 24859863 chr2R 24859926 24859949 7 86 3.0 1.0 2.0 2.3 109 chr2R 24859840 5` UTR CR44829 + chr2R 24859894 5` UTR CR44829 + chr2R 24859949 5` UTR CR44829 + chr2R_7_24855001 chr2R_24855001 RAL-101 490 chr3L 110222 110242 chr3L 119389 119409 roo 6 9167 2.0 2.0 2.0 2.0 9187 chr3L 110222 intergenic not near genes chr3L 114816 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_6_110001 chr3L_110001 RAL-101 491 chr3L 402690 402714 chr3L 409740 409764 297 12 7050 6.5 3.5 5.0 2.0 7074 chr3L 402690 intergenic not near genes chr3L 406227 intergenic not near genes chr3L 409764 intergenic not near genes chr3L_12_405001 chr3L_405001 RAL-101 492 chr3L 563977 563987 chr3L 564156 564166 5 178 2.0 2.0 2.0 1.7 189 chr3L 563977 intron hipk + chr3L 564072 intron hipk + chr3L 564166 intron hipk + chr3L_5_560001 chr3L_560001 RAL-101 493 chr3L 563988 563998 chr3L 564148 564176 5 175 1.5 1.5 1.5 2.0 188 chr3L 563988 intron hipk + chr3L 564082 intron hipk + chr3L 564176 intron hipk + chr3L_5_560001 chr3L_560001 RAL-101 494 chr3L 651390 651424 chr3L 651478 651511 9 88 1.5 4.0 2.8 2.4 121 chr3L 651390 intergenic Gale +,CG3402 - chr3L 651450 intergenic CG3402 -,Gale + chr3L 651511 intergenic CG3402 -,Gale + chr3L_9_650001 chr3L_650001 RAL-101 495 chr3L 698112 698142 chr3L 698285 698314 8 173 0.5 1.5 1.0 4.0 202 chr3L 698112 intron CG13894 - chr3L 698213 intron CG13894 - chr3L 698314 intron CG13894 - chr3L_8_695001 chr3L_695001 RAL-101 496 chr3L 705246 705260 chr3L 705322 705336 8 76 5.0 3.0 4.0 1.6 90 chr3L 705246 intergenic CR44514 + chr3L 705291 intergenic CR44514 + chr3L 705336 5` UTR CR44514 + chr3L_8_705001 chr3L_705001 RAL-101 497 chr3L 721702 721729 chr3L 721974 721974 8 269 4.0 1.0 2.5 2.3 272 chr3L 721702 intergenic not near genes chr3L 721838 intergenic not near genes chr3L 721974 intergenic not near genes chr3L_8_720001 chr3L_720001 RAL-101 498 chr3L 858010 858032 chr3L 866485 866495 Tirant 6 8475 3.5 3.0 3.2 1.4 8485 chr3L 858010 intergenic not near genes chr3L 862252 intergenic not near genes chr3L 866495 intergenic CG12502 + chr3L_6_860001 chr3L_860001 RAL-101 499 chr3L 920414 920442 chr3L 920506 920534 8 92 1.5 1.0 1.2 3.6 120 chr3L 920414 intron Glut1 + chr3L 920474 intron Glut1 + chr3L 920534 intron Glut1 + chr3L_8_920001 chr3L_920001 RAL-101 500 chr3L 925202 925208 chr3L 932628 932634 mdg1 4 7426 0.0 3.0 1.5 1.6 7432 chr3L 925202 intron Glut1 + chr3L 928918 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-101 501 chr3L 939772 939802 chr3L 940893 940923 jockey 8 1121 4.0 2.0 3.0 2.0 1151 chr3L 939772 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-101 502 chr3L 1011002 1011028 chr3L 1011082 1011108 4 80 3.0 3.0 3.0 1.0 106 chr3L 1011002 intron trio - chr3L 1011055 intron trio - chr3L 1011108 intron trio - chr3L_4_1010001 chr3L_1010001 RAL-101 503 chr3L 1109641 1109661 chr3L 1109721 1109749 4 86 3.0 2.5 2.8 1.1 108 chr3L 1109641 intergenic not near genes chr3L 1109695 intergenic not near genes chr3L 1109749 intergenic not near genes chr3L_4_1105001 chr3L_1105001 RAL-101 504 chr3L 1219595 1219621 chr3L 1227328 1227354 412 6 7733 5.0 3.0 4.0 1.2 7759 chr3L 1219595 intron mwh + chr3L 1223474 intron mwh + chr3L 1227354 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-101 505 chr3L 1310987 1311013 chr3L 1315847 1315873 10 4861 21.0 25.0 23.0 0.4 4886 chr3L 1310987 exon CG2469 + chr3L 1313430 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_10_1310001 chr3L_1310001 RAL-101 506 chr3L 1397152 1397170 chr3L 1397398 1397414 7 246 1.5 1.0 1.2 3.2 262 chr3L 1397152 intron Ptp61F - chr3L 1397283 intron Ptp61F - chr3L 1397414 intron Ptp61F - chr3L_7_1395001 chr3L_1395001 RAL-101 507 chr3L 1415773 1415808 chr3L 1415855 1415880 10 78 2.0 6.0 4.0 2.0 107 chr3L 1415773 intron Ptp61F - chr3L 1415826 intron Ptp61F - chr3L 1415880 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-101 508 chr3L 1480963 1480994 chr3L 1481087 1481118 8 123 1.5 3.0 2.2 2.5 155 chr3L 1480963 intron stet - chr3L 1481040 intron stet - chr3L 1481118 intron stet - chr3L_8_1480001 chr3L_1480001 RAL-101 509 chr3L 1501997 1502019 chr3L 1502078 1502099 4 80 1.5 1.5 1.5 1.6 102 chr3L 1501997 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502099 intron pUf68 - chr3L_4_1500001 chr3L_1500001 RAL-101 510 chr3L 1505996 1506024 chr3L 1513592 1513621 17.6 11 7594 5.0 2.5 3.8 2.3 7625 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513621 intron,intron Psa +,cue - chr3L_11_1505001 chr3L_1505001 RAL-101 511 chr3L 1569521 1569530 chr3L 1569597 1569597 7 74 3.5 6.5 5.0 1.2 76 chr3L 1569521 5` UTR CG12004 + chr3L 1569559 intron CG12004 + chr3L 1569597 intron CG12004 + chr3L_7_1565001 chr3L_1565001 RAL-101 512 chr3L 1683563 1683593 chr3L 1683646 1683676 17 81 4.0 6.0 5.0 2.8 113 chr3L 1683563 intron CG7991 + chr3L 1683620 intron CG7991 + chr3L 1683676 intron CG7991 + chr3L_17_1680001 chr3L_1680001 RAL-101 513 chr3L 1728517 1728545 chr3L 1728602 1728630 4 85 4.5 2.5 3.5 0.9 113 chr3L 1728517 intron drpr - chr3L 1728574 intron drpr - chr3L 1728630 intron drpr - chr3L_4_1725001 chr3L_1725001 RAL-101 514 chr3L 1991118 1991131 chr3L 1991196 1991209 4 78 2.0 1.5 1.8 1.4 91 chr3L 1991118 intergenic not near genes chr3L 1991164 intergenic not near genes chr3L 1991209 intergenic not near genes chr3L_4_1990001 chr3L_1990001 RAL-101 515 chr3L 2187619 2187633 chr3L 2187690 2187716 4 78 0.5 2.0 1.2 1.8 97 chr3L 2187619 exon CG13810 + chr3L 2187668 3` UTR CG13810 + chr3L 2187716 intergenic CG13810 + chr3L_4_2185001 chr3L_2185001 RAL-101 516 chr3L 2308003 2308030 chr3L 2308109 2308136 6 106 2.0 1.0 1.5 2.4 133 chr3L 2308003 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308136 intergenic not near genes chr3L_6_2305001 chr3L_2305001 RAL-101 517 chr3L 2321166 2321186 chr3L 2321242 2321263 5 76 3.0 2.5 2.8 1.3 97 chr3L 2321166 intergenic not near genes chr3L 2321214 intergenic not near genes chr3L 2321263 intergenic not near genes chr3L_5_2320001 chr3L_2320001 RAL-101 518 chr3L 2411336 2411585 chr3L 2411416 2411667 7 77 1.0 1.5 1.2 3.2 331 chr3L 2411336 intron CG45186 + chr3L 2411502 intron CG45186 + chr3L 2411667 intron CG45186 + chr3L_7_2410001 chr3L_2410001 RAL-101 519 chr3L 2447504 2447534 chr3L 2456660 2456690 roo 7 9146 1.0 2.5 1.8 2.5 9186 chr3L 2447504 intron CG45186 + chr3L 2452097 intron CG45186 + chr3L 2456690 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-101 520 chr3L 2561544 2561557 chr3L 2561621 2561634 4 76 2.0 1.5 1.8 1.4 90 chr3L 2561544 intron msn - chr3L 2561589 intron msn - chr3L 2561634 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-101 521 chr3L 2581901 2581920 chr3L 2582001 2582020 5 100 2.5 0.5 1.5 2.0 119 chr3L 2581901 intron msn - chr3L 2581960 intron msn - chr3L 2582020 intron msn - chr3L_5_2580001 chr3L_2580001 RAL-101 522 chr3L 2624390 2624417 chr3L 2624532 2624559 4 142 0.5 2.5 1.5 1.6 169 chr3L 2624390 intron Pxn - chr3L 2624474 intron Pxn - chr3L 2624559 intron Pxn - chr3L_4_2620001 chr3L_2620001 RAL-101 523 chr3L 2854477 2854493 chr3L 2854555 2854571 5 77 3.0 1.5 2.2 1.6 94 chr3L 2854477 intron CG43444 - chr3L 2854524 intron CG43444 - chr3L 2854571 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-101 524 chr3L 2927839 2927863 chr3L 2936115 2936140 Tirant 5 8277 2.5 0.0 1.2 2.3 8301 chr3L 2927839 intron Shab + chr3L 2931990 intron Shab + chr3L 2936140 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-101 525 chr3L 3028341 3028362 chr3L 3028420 3028438 4 78 6.0 2.0 4.0 0.8 97 chr3L 3028341 intergenic not near genes chr3L 3028390 intergenic not near genes chr3L 3028438 intergenic not near genes chr3L_4_3025001 chr3L_3025001 RAL-101 526 chr3L 3061284 3061309 chr3L 3069866 3069889 Tirant 4 8576 5.0 0.5 2.8 1.1 8605 chr3L 3061284 intron CG32486 - chr3L 3065586 intron CG32486 - chr3L 3069889 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-101 527 chr3L 3281440 3281474 chr3L 3281935 3281970 Doc 7 495 0.0 6.0 3.0 1.8 530 chr3L 3281440 intron CG12017 + chr3L 3281705 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-101 528 chr3L 3334520 3334548 chr3L 3334612 3334640 5 91 2.0 1.5 1.8 1.8 120 chr3L 3334520 exon CG14969 - chr3L 3334580 5` UTR CG14969 - chr3L 3334640 5` UTR CG14969 - chr3L_5_3330001 chr3L_3330001 RAL-101 529 chr3L 3475078 3475110 chr3L 3475522 3475553 jockey 8 441 3.5 4.0 3.8 1.7 475 chr3L 3475078 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475553 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-101 530 chr3L 3585600 3585626 chr3L 3585692 3585718 4 92 0.0 1.5 0.8 2.2 118 chr3L 3585600 intron Eip63E + chr3L 3585659 intron Eip63E + chr3L 3585718 intron Eip63E + chr3L_4_3585001 chr3L_3585001 RAL-101 531 chr3L 3601305 3601318 chr3L 3606616 3606629 copia 5 5311 4.5 2.0 3.2 1.2 5324 chr3L 3601305 intron Eip63E + chr3L 3603967 intron Eip63E + chr3L 3606629 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-101 532 chr3L 3709459 3709467 chr3L 3709541 3709549 4 82 0.0 2.0 1.0 2.0 90 chr3L 3709459 intergenic CR45675 + chr3L 3709504 intergenic not near genes chr3L 3709549 intergenic not near genes chr3L_4_3705001 chr3L_3705001 RAL-101 533 chr3L 3763760 3763773 chr3L 3763841 3763854 5 81 3.5 0.5 2.0 1.7 94 chr3L 3763760 intron CG32264 - chr3L 3763807 intron CG32264 - chr3L 3763854 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-101 534 chr3L 4015738 4015752 chr3L 4015821 4015835 7 83 2.5 0.5 1.5 2.8 97 chr3L 4015738 intergenic not near genes chr3L 4015786 intergenic not near genes chr3L 4015835 intergenic not near genes chr3L_7_4015001 chr3L_4015001 RAL-101 535 chr3L 4043276 4043290 chr3L 4043444 4043458 5 168 3.0 2.0 2.5 1.4 182 chr3L 4043276 intergenic not near genes chr3L 4043367 intergenic not near genes chr3L 4043458 intergenic not near genes chr3L_5_4040001 chr3L_4040001 RAL-101 536 chr3L 4187342 4187355 chr3L 4187488 4187517 7 160 1.5 0.5 1.0 3.5 175 chr3L 4187342 intron,intron CG18675 +,Teh2 - chr3L 4187430 intron,intron CG18675 +,Teh2 - chr3L 4187517 intron,intron CG18675 +,Teh2 - chr3L_7_4185001 chr3L_4185001 RAL-101 537 chr3L 4337571 4337595 chr3L 4337679 4337704 8 108 2.5 3.0 2.8 2.1 133 chr3L 4337571 intron Cip4 - chr3L 4337638 intron Cip4 - chr3L 4337704 intron Cip4 - chr3L_8_4335001 chr3L_4335001 RAL-101 538 chr3L 4638774 4638786 chr3L 4638877 4638884 7 102 3.0 3.0 3.0 1.8 110 chr3L 4638774 intron axo - chr3L 4638829 intron axo - chr3L 4638884 intron axo - chr3L_7_4635001 chr3L_4635001 RAL-101 539 chr3L 4720279 4720295 chr3L 4720367 4720376 4 85 4.5 0.0 2.2 1.2 97 chr3L 4720279 intron RhoGEF64C + chr3L 4720328 intron RhoGEF64C + chr3L 4720376 intron RhoGEF64C + chr3L_4_4720001 chr3L_4720001 RAL-101 540 chr3L 4748709 4748723 chr3L 4748800 4748814 4 90 3.0 2.0 2.5 1.1 105 chr3L 4748709 intron RhoGEF64C + chr3L 4748762 intron RhoGEF64C + chr3L 4748814 intron RhoGEF64C + chr3L_4_4745001 chr3L_4745001 RAL-101 541 chr3L 4797961 4797991 chr3L 4798041 4798070 9 78 3.0 2.0 2.5 2.6 109 chr3L 4797961 intergenic not near genes chr3L 4798016 intergenic not near genes chr3L 4798070 intergenic not near genes chr3L_9_4795001 chr3L_4795001 RAL-101 542 chr3L 4837887 4837922 chr3L 4837966 4838001 5 79 0.5 2.0 1.2 2.3 114 chr3L 4837887 3` UTR CG13707 - chr3L 4837944 3` UTR CG13707 - chr3L 4838001 3` UTR CG13707 - chr3L_5_4835001 chr3L_4835001 RAL-101 543 chr3L 5034158 5034189 chr3L 5043310 5043341 roo 5 9151 3.5 0.5 2.0 1.7 9183 chr3L 5034158 intron Con - chr3L 5038750 intron Con - chr3L 5043341 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-101 544 chr3L 5130928 5130948 chr3L 5131031 5131051 6 103 2.0 0.5 1.2 2.7 123 chr3L 5130928 intergenic not near genes chr3L 5130990 intergenic not near genes chr3L 5131051 intergenic CG15212 + chr3L_6_5130001 chr3L_5130001 RAL-101 545 chr3L 5212239 5212266 chr3L 5212321 5212349 11 81 2.5 4.0 3.2 2.6 110 chr3L 5212239 intron shep - chr3L 5212294 intron shep - chr3L 5212349 intron shep - chr3L_11_5210001 chr3L_5210001 RAL-101 546 chr3L 5263319 5263340 chr3L 5263395 5263416 4 76 1.5 0.5 1.0 2.0 97 chr3L 5263319 intron shep - chr3L 5263368 intron shep - chr3L 5263416 intron shep - chr3L_4_5260001 chr3L_5260001 RAL-101 547 chr3L 5388202 5388228 chr3L 5388526 5388552 10 322 4.0 2.0 3.0 2.5 350 chr3L 5388202 intergenic not near genes chr3L 5388377 intergenic not near genes chr3L 5388552 intergenic not near genes chr3L_10_5385001 chr3L_5385001 RAL-101 548 chr3L 5482940 5482975 chr3L 5483263 5483263 4 314 0.5 23.0 11.8 0.3 323 chr3L 5482940 exon CG4835 + chr3L 5483102 exon CG4835 + chr3L 5483263 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-101 549 chr3L 5551954 5552129 chr3L 5552030 5552222 5 81 0.5 1.0 0.8 2.8 268 chr3L 5551954 intergenic not near genes chr3L 5552088 intergenic not near genes chr3L 5552222 intergenic not near genes chr3L_5_5550001 chr3L_5550001 RAL-101 550 chr3L 5577450 5577469 chr3L 5577557 5577576 4 106 2.0 5.0 3.5 0.9 126 chr3L 5577450 intergenic Msr-110 - chr3L 5577513 intergenic Msr-110 - chr3L 5577576 intergenic Msr-110 - chr3L_4_5575001 chr3L_5575001 RAL-101 551 chr3L 5701566 5701569 chr3L 5701647 5701650 4 80 8.5 2.5 5.5 0.6 84 chr3L 5701566 intron sif + chr3L 5701608 intron sif + chr3L 5701650 intron sif + chr3L_4_5700001 chr3L_5700001 RAL-101 552 chr3L 5701570 5701599 chr3L 5701646 5701680 12 80 2.5 2.5 2.5 3.4 110 chr3L 5701570 intron sif + chr3L 5701625 intron sif + chr3L 5701680 intron sif + chr3L_12_5700001 chr3L_5700001 RAL-101 553 chr3L 5910031 5910054 chr3L 5910272 5910295 pogo 4 241 1.5 0.5 1.0 2.0 264 chr3L 5910031 intron CG13288 + chr3L 5910163 intron CG13288 + chr3L 5910295 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-101 554 chr3L 6052658 6052668 chr3L 6052743 6052750 4 84 9.5 10.5 10.0 0.4 92 chr3L 6052658 exon Jon65Aii + chr3L 6052704 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-101 555 chr3L 6086218 6086241 chr3L 6086295 6086319 5 78 1.5 2.0 1.8 1.8 101 chr3L 6086218 intron CG13293 + chr3L 6086268 intron CG13293 + chr3L 6086319 intron CG13293 + chr3L_5_6085001 chr3L_6085001 RAL-101 556 chr3L 6154910 6154940 chr3L 6159423 6159453 12 4513 32.0 22.0 27.0 0.4 4543 chr3L 6154910 3` UTR CR45421 - chr3L 6157182 exon CG13297 - chr3L 6159453 intergenic not near genes chr3L_12_6155001 chr3L_6155001 RAL-101 557 chr3L 6220926 6220943 chr3L 6230077 6230095 roo 6 9152 5.0 3.5 4.2 1.2 9169 chr3L 6220926 5` UTR pncr008:3L + chr3L 6225510 intergenic not near genes chr3L 6230095 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-101 558 chr3L 6335009 6335034 chr3L 6335480 6335504 297 5 467 1.0 2.0 1.5 2.0 495 chr3L 6335009 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335504 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-101 559 chr3L 6358623 6358647 chr3L 6358700 6358724 10 77 1.5 3.5 2.5 2.9 101 chr3L 6358623 intergenic not near genes chr3L 6358674 intergenic not near genes chr3L 6358724 intergenic not near genes chr3L_10_6355001 chr3L_6355001 RAL-101 560 chr3L 6855936 6855951 chr3L 6860718 6860734 Doc 5 4783 4.0 5.5 4.8 0.9 4798 chr3L 6855936 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860734 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-101 561 chr3L 6887526 6887546 chr3L 6895018 6895038 roo 6 7492 3.0 1.5 2.2 1.9 7512 chr3L 6887526 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895038 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-101 562 chr3L 6958983 6959001 chr3L 6963568 6963580 4 4581 23.0 21.0 22.0 0.2 4597 chr3L 6958983 exon Surf1 + chr3L 6961282 exon sgl - chr3L 6963580 intron sgl - chr3L_4_6960001 chr3L_6960001 RAL-101 563 chr3L 7033180 7033203 chr3L 7033258 7033283 9 79 4.5 4.0 4.2 1.7 103 chr3L 7033180 intron Mp + chr3L 7033232 intron Mp + chr3L 7033283 intron Mp + chr3L_9_7030001 chr3L_7030001 RAL-101 564 chr3L 7090906 7090920 chr3L 7090990 7091004 6 84 1.5 3.0 2.2 1.9 98 chr3L 7090906 intergenic not near genes chr3L 7090955 intergenic not near genes chr3L 7091004 intergenic not near genes chr3L_6_7090001 chr3L_7090001 RAL-101 565 chr3L 7150875 7150900 chr3L 7150951 7150976 5 76 0.5 0.5 0.5 3.3 101 chr3L 7150875 intron corn - chr3L 7150926 intron corn - chr3L 7150976 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-101 566 chr3L 7211388 7211416 chr3L 7211500 7211520 4 110 5.0 1.5 3.2 1.0 132 chr3L 7211388 intergenic not near genes chr3L 7211454 intergenic not near genes chr3L 7211520 intergenic not near genes chr3L_4_7210001 chr3L_7210001 RAL-101 567 chr3L 7285455 7285467 chr3L 7285533 7285545 4 78 1.5 3.0 2.2 1.2 90 chr3L 7285455 intron unc-13-4A - chr3L 7285500 intron unc-13-4A - chr3L 7285545 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-101 568 chr3L 7311591 7311616 chr3L 7311682 7311706 5 91 1.5 1.0 1.2 2.3 115 chr3L 7311591 intron unc-13-4A - chr3L 7311648 intron unc-13-4A - chr3L 7311706 intron unc-13-4A - chr3L_5_7310001 chr3L_7310001 RAL-101 569 chr3L 7358301 7358348 chr3L 7359579 7359590 9 1274 16.5 16.5 16.5 0.5 1289 chr3L 7358301 exon pst - chr3L 7358946 exon pst - chr3L 7359590 exon pst - chr3L_9_7355001 chr3L_7355001 RAL-101 570 chr3L 7508687 7508706 chr3L 7508771 7508790 5 84 0.5 3.0 1.8 1.8 103 chr3L 7508687 intergenic not near genes chr3L 7508738 intergenic not near genes chr3L 7508790 intergenic not near genes chr3L_5_7505001 chr3L_7505001 RAL-101 571 chr3L 7576223 7576242 chr3L 7576310 7576330 5 88 4.0 4.0 4.0 1.0 107 chr3L 7576223 intergenic not near genes chr3L 7576276 intergenic not near genes chr3L 7576330 intergenic not near genes chr3L_5_7575001 chr3L_7575001 RAL-101 572 chr3L 7591144 7591181 chr3L 7591235 7591272 8 87 2.5 3.5 3.0 2.0 128 chr3L 7591144 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591272 intergenic CG7716 - chr3L_8_7590001 chr3L_7590001 RAL-101 573 chr3L 7793712 7793734 chr3L 7800764 7800786 297 6 7051 4.0 1.5 2.8 1.6 7074 chr3L 7793712 intron CG32369 - chr3L 7797249 intron CG32369 - chr3L 7800786 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-101 574 chr3L 7886513 7886539 chr3L 7889030 7889055 Stalker4 6 2518 1.5 2.5 2.0 2.0 2542 chr3L 7886513 intron CG32365 + chr3L 7887784 intron CG32365 + chr3L 7889055 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-101 575 chr3L 7967759 7967764 chr3L 7968087 7968091 4 328 2.0 3.0 2.5 1.1 332 chr3L 7967759 intergenic not near genes chr3L 7967925 intergenic not near genes chr3L 7968091 intergenic not near genes chr3L_4_7965001 chr3L_7965001 RAL-101 576 chr3L 7985392 7985401 chr3L 7987720 7987728 NOF 5 2328 1.0 3.5 2.2 1.6 2336 chr3L 7985392 intron nmo + chr3L 7986560 intron nmo + chr3L 7987728 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-101 577 chr3L 8226979 8226997 chr3L 8227214 8227231 7 234 1.5 8.5 5.0 1.2 252 chr3L 8226979 intergenic not near genes chr3L 8227105 intergenic not near genes chr3L 8227231 intergenic not near genes chr3L_7_8225001 chr3L_8225001 RAL-101 578 chr3L 8248316 8248343 chr3L 8248406 8248433 7 90 2.5 1.5 2.0 2.3 117 chr3L 8248316 intron Dscam4 + chr3L 8248374 intron Dscam4 + chr3L 8248433 intron Dscam4 + chr3L_7_8245001 chr3L_8245001 RAL-101 579 chr3L 8295792 8295825 chr3L 8295950 8295983 14 158 1.0 2.0 1.5 5.6 191 chr3L 8295792 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_14_8295001 chr3L_8295001 RAL-101 580 chr3L 8451389 8451411 chr3L 8451466 8451489 4 78 1.0 2.0 1.5 1.6 100 chr3L 8451389 intron Gug + chr3L 8451439 intron Gug + chr3L 8451489 intron Gug + chr3L_4_8450001 chr3L_8450001 RAL-101 581 chr3L 8690599 8690633 chr3L 8690846 8690880 13 245 1.5 3.5 2.5 3.7 281 chr3L 8690599 intergenic not near genes chr3L 8690740 intergenic not near genes chr3L 8690880 intergenic not near genes chr3L_13_8690001 chr3L_8690001 RAL-101 582 chr3L 8996430 8996446 chr3L 8996518 8996535 4 89 1.5 2.5 2.0 1.3 105 chr3L 8996430 intron smg - chr3L 8996482 intron smg - chr3L 8996535 intron smg - chr3L_4_8995001 chr3L_8995001 RAL-101 583 chr3L 9009956 9009975 chr3L 9010060 9010079 8 104 3.0 2.5 2.8 2.1 123 chr3L 9009956 intergenic CG5194 - chr3L 9010018 intergenic CG5194 - chr3L 9010079 intergenic CG5194 - chr3L_8_9010001 chr3L_9010001 RAL-101 584 chr3L 9030435 9030454 chr3L 9030514 9030533 4 79 2.0 0.0 1.0 2.0 98 chr3L 9030435 intergenic not near genes chr3L 9030484 intergenic not near genes chr3L 9030533 intergenic not near genes chr3L_4_9030001 chr3L_9030001 RAL-101 585 chr3L 9036437 9036452 chr3L 9036515 9036530 5 78 5.0 1.5 3.2 1.2 93 chr3L 9036437 intergenic not near genes chr3L 9036484 intergenic not near genes chr3L 9036530 intergenic not near genes chr3L_5_9035001 chr3L_9035001 RAL-101 586 chr3L 9076928 9076954 chr3L 9084488 9084493 412 11 7558 5.0 3.5 4.2 2.1 7565 chr3L 9076928 exon Tequila + chr3L 9080710 intron Tequila + chr3L 9084493 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-101 587 chr3L 9130558 9130581 chr3L 9134319 9134341 412 4 3761 4.0 3.5 3.8 0.8 3783 chr3L 9130558 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-101 588 chr3L 9191875 9191907 chr3L 9191965 9191997 9 90 3.0 1.0 2.0 3.0 122 chr3L 9191875 intergenic not near genes chr3L 9191936 intergenic not near genes chr3L 9191997 intergenic not near genes chr3L_9_9190001 chr3L_9190001 RAL-101 589 chr3L 9219247 9219274 chr3L 9219919 9219937 jockey 10 670 6.0 4.5 5.2 1.6 690 chr3L 9219247 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-101 590 chr3L 9270615 9270649 chr3L 9278370 9278396 roo 6 7752 3.5 1.0 2.2 1.9 7781 chr3L 9270615 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278396 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-101 591 chr3L 9524040 9524066 chr3L 9524120 9524146 9 78 2.0 6.0 4.0 1.8 106 chr3L 9524040 intron CG33700 - chr3L 9524093 intron CG33700 - chr3L 9524146 intron CG33700 - chr3L_9_9520001 chr3L_9520001 RAL-101 592 chr3L 9533754 9533784 chr3L 9541314 9541344 412 10 7552 1.0 5.0 3.0 2.5 7590 chr3L 9533754 intergenic not near genes chr3L 9537549 intergenic not near genes chr3L 9541344 intergenic not near genes chr3L_10_9535001 chr3L_9535001 RAL-101 593 chr3L 9575908 9575940 chr3L 9580988 9581017 jockey 4 5079 4.5 5.0 4.8 0.7 5109 chr3L 9575908 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581017 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-101 594 chr3L 9895366 9895382 chr3L 9895446 9895462 4 80 3.5 5.0 4.2 0.8 96 chr3L 9895366 3` UTR CG6707 - chr3L 9895414 3` UTR CG6707 - chr3L 9895462 3` UTR CG6707 - chr3L_4_9895001 chr3L_9895001 RAL-101 595 chr3L 9895384 9895390 chr3L 9895444 9895467 6 72 2.5 5.0 3.8 1.2 83 chr3L 9895384 3` UTR CG6707 - chr3L 9895426 3` UTR CG6707 - chr3L 9895467 3` UTR CG6707 - chr3L_6_9895001 chr3L_9895001 RAL-101 596 chr3L 9918891 9918911 chr3L 9918976 9919006 4 92 3.5 3.5 3.5 0.9 115 chr3L 9918891 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-101 597 chr3L 9951708 9951725 chr3L 9951795 9951810 9 86 1.5 5.0 3.2 2.1 102 chr3L 9951708 intron CG34356 + chr3L 9951759 intron CG34356 + chr3L 9951810 intron CG34356 + chr3L_9_9950001 chr3L_9950001 RAL-101 598 chr3L 10003163 10003178 chr3L 10003260 10003275 7 97 1.0 7.5 4.2 1.3 112 chr3L 10003163 intron dpr6 + chr3L 10003219 intron dpr6 + chr3L 10003275 intron dpr6 + chr3L_7_10000001 chr3L_10000001 RAL-101 599 chr3L 10007190 10007204 chr3L 10007293 10007306 4 103 1.0 1.5 1.2 1.8 116 chr3L 10007190 intron dpr6 + chr3L 10007248 intron dpr6 + chr3L 10007306 intron dpr6 + chr3L_4_10005001 chr3L_10005001 RAL-101 600 chr3L 10182255 10182285 chr3L 10182339 10182365 6 82 2.5 3.0 2.8 1.6 110 chr3L 10182255 exon dpr10 - chr3L 10182310 5` UTR dpr10 - chr3L 10182365 5` UTR dpr10 - chr3L_6_10180001 chr3L_10180001 RAL-101 601 chr3L 10269762 10269783 chr3L 10269846 10269867 4 84 1.5 3.0 2.2 1.2 105 chr3L 10269762 5` UTR CR45242 + chr3L 10269814 5` UTR CR45242 + chr3L 10269867 5` UTR CR45242 + chr3L_4_10265001 chr3L_10265001 RAL-101 602 chr3L 10308757 10308771 chr3L 10308834 10308848 7 77 3.0 5.0 4.0 1.4 91 chr3L 10308757 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-101 603 chr3L 10386392 10386411 chr3L 10386466 10386488 7 76 2.0 2.0 2.0 2.3 96 chr3L 10386392 intergenic CR45245 + chr3L 10386440 intergenic CR45245 + chr3L 10386488 5` UTR CR45245 + chr3L_7_10385001 chr3L_10385001 RAL-101 604 chr3L 10414952 10414977 chr3L 10417319 10417349 Doc 5 2371 1.0 1.5 1.2 2.3 2397 chr3L 10414952 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-101 605 chr3L 10417570 10417603 chr3L 10417647 10417680 6 70 2.0 2.0 2.0 2.0 110 chr3L 10417570 intergenic not near genes chr3L 10417625 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-101 606 chr3L 10553106 10553124 chr3L 10553186 10553202 7 80 1.0 2.5 1.8 2.5 96 chr3L 10553106 intron A2bp1 + chr3L 10553154 intron A2bp1 + chr3L 10553202 intron A2bp1 + chr3L_7_10550001 chr3L_10550001 RAL-101 607 chr3L 10569122 10569147 chr3L 10569404 10569430 4 283 1.0 1.5 1.2 1.8 308 chr3L 10569122 intron A2bp1 + chr3L 10569276 intron A2bp1 + chr3L 10569430 intron A2bp1 + chr3L_4_10565001 chr3L_10565001 RAL-101 608 chr3L 10600456 10600467 chr3L 10600538 10600549 4 82 1.5 0.5 1.0 2.0 93 chr3L 10600456 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600549 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-101 609 chr3L 10654126 10654145 chr3L 10654213 10654226 5 81 1.0 1.0 1.0 2.5 100 chr3L 10654126 intron CG32066 - chr3L 10654176 intron CG32066 - chr3L 10654226 intron CG32066 - chr3L_5_10650001 chr3L_10650001 RAL-101 610 chr3L 10762833 10762859 chr3L 10762917 10762943 6 84 4.0 2.0 3.0 1.5 110 chr3L 10762833 intergenic not near genes chr3L 10762888 intergenic not near genes chr3L 10762943 intergenic not near genes chr3L_6_10760001 chr3L_10760001 RAL-101 611 chr3L 10974829 10974858 chr3L 10974991 10975020 8 162 3.5 0.5 2.0 2.7 191 chr3L 10974829 intergenic not near genes chr3L 10974924 intergenic not near genes chr3L 10975020 intergenic not near genes chr3L_8_10970001 chr3L_10970001 RAL-101 612 chr3L 11083514 11083536 chr3L 11083611 11083634 4 98 0.5 1.5 1.0 2.0 120 chr3L 11083514 intron JIL-1 - chr3L 11083574 intron JIL-1 - chr3L 11083634 intron JIL-1 - chr3L_4_11080001 chr3L_11080001 RAL-101 613 chr3L 11087065 11087089 chr3L 11088850 11088878 S-element 6 1787 0.5 2.5 1.5 2.4 1813 chr3L 11087065 intron JIL-1 - chr3L 11087972 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_6_11085001 chr3L_11085001 RAL-101 614 chr3L 11264473 11264499 chr3L 11271423 11271450 17.6 4 6951 2.5 0.0 1.2 1.8 6977 chr3L 11264473 intergenic not near genes chr3L 11267962 intergenic not near genes chr3L 11271450 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-101 615 chr3L 11588739 11588758 chr3L 11588895 11588914 8 156 0.5 4.0 2.2 2.5 175 chr3L 11588739 intergenic not near genes chr3L 11588826 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_8_11585001 chr3L_11585001 RAL-101 616 chr3L 11729680 11729702 chr3L 11729756 11729778 6 76 3.0 2.0 2.5 1.7 98 chr3L 11729680 exon CG32088 + chr3L 11729729 intron CG32088 + chr3L 11729778 exon CG32088 + chr3L_6_11725001 chr3L_11725001 RAL-101 617 chr3L 11742614 11742630 chr3L 11742850 11742864 5 236 7.0 3.5 5.2 0.8 250 chr3L 11742614 intron CG6024 - chr3L 11742739 intron CG6024 - chr3L 11742864 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-101 618 chr3L 11744014 11744031 chr3L 11744122 11744139 6 107 3.5 0.5 2.0 2.0 125 chr3L 11744014 exon CG6024 - chr3L 11744076 intron CG6024 - chr3L 11744139 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-101 619 chr3L 11746675 11746683 chr3L 11746754 11746762 4 79 0.5 1.0 0.8 2.2 87 chr3L 11746675 intron CG6024 - chr3L 11746718 intron CG6024 - chr3L 11746762 intron CG6024 - chr3L_4_11745001 chr3L_11745001 RAL-101 620 chr3L 12013911 12013936 chr3L 12014002 12014027 8 91 1.5 2.5 2.0 2.7 116 chr3L 12013911 intron rols - chr3L 12013969 intron rols - chr3L 12014027 intron rols - chr3L_8_12010001 chr3L_12010001 RAL-101 621 chr3L 12034889 12034917 chr3L 12034965 12034970 6 72 0.5 0.0 0.2 5.0 81 chr3L 12034889 intron rols - chr3L 12034930 intron rols - chr3L 12034970 intron rols - chr3L_6_12030001 chr3L_12030001 RAL-101 622 chr3L 12089086 12089111 chr3L 12089166 12089191 8 79 0.5 1.5 1.0 4.0 105 chr3L 12089086 3` UTR CG17154 + chr3L 12089138 3` UTR CG17154 + chr3L 12089191 3` UTR CG17154 + chr3L_8_12085001 chr3L_12085001 RAL-101 623 chr3L 12105969 12106003 chr3L 12106056 12106090 15 85 3.5 5.0 4.2 2.9 121 chr3L 12105969 intergenic not near genes chr3L 12106030 intergenic not near genes chr3L 12106090 intergenic not near genes chr3L_15_12105001 chr3L_12105001 RAL-101 624 chr3L 12158778 12158805 chr3L 12160248 12160277 10 1471 36.5 28.5 32.5 0.3 1499 chr3L 12158778 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160277 intron CG9760 - chr3L_10_12155001 chr3L_12155001 RAL-101 625 chr3L 12304096 12304118 chr3L 12304172 12304194 6 76 2.0 7.5 4.8 1.0 98 chr3L 12304096 intergenic not near genes chr3L 12304145 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-101 626 chr3L 12335391 12335402 chr3L 12335464 12335468 5 75 3.5 5.5 4.5 0.9 77 chr3L 12335391 exon CG32105 + chr3L 12335430 3` UTR CG32105 + chr3L 12335468 3` UTR CG32105 + chr3L_5_12335001 chr3L_12335001 RAL-101 627 chr3L 12377783 12377808 chr3L 12377870 12377895 4 87 4.0 2.0 3.0 1.0 112 chr3L 12377783 intron Ncc69 - chr3L 12377839 intron Ncc69 - chr3L 12377895 intron Ncc69 - chr3L_4_12375001 chr3L_12375001 RAL-101 628 chr3L 12380764 12380787 chr3L 12380879 12380897 11 114 4.0 6.0 5.0 1.8 133 chr3L 12380764 intron Ncc69 - chr3L 12380830 intron Ncc69 - chr3L 12380897 intron Ncc69 - chr3L_11_12380001 chr3L_12380001 RAL-101 629 chr3L 12392450 12392477 chr3L 12392569 12392596 7 119 0.5 3.0 1.8 2.5 146 chr3L 12392450 intergenic not near genes chr3L 12392523 intergenic not near genes chr3L 12392596 intergenic not near genes chr3L_7_12390001 chr3L_12390001 RAL-101 630 chr3L 12476306 12476322 chr3L 12476382 12476398 4 75 0.5 3.0 1.8 1.4 92 chr3L 12476306 intron CG10663 - chr3L 12476352 intron CG10663 - chr3L 12476398 intron CG10663 - chr3L_4_12475001 chr3L_12475001 RAL-101 631 chr3L 12565360 12565388 chr3L 12565473 12565502 8 114 2.5 2.5 2.5 2.3 142 chr3L 12565360 intron sowah - chr3L 12565431 intron sowah - chr3L 12565502 intron sowah - chr3L_8_12565001 chr3L_12565001 RAL-101 632 chr3L 12615745 12615766 chr3L 12615821 12615832 5 72 5.0 4.5 4.8 0.9 87 chr3L 12615745 intron caup + chr3L 12615788 intron caup + chr3L 12615832 intron caup + chr3L_5_12615001 chr3L_12615001 RAL-101 633 chr3L 12720334 12720355 chr3L 12720417 12720439 5 83 2.0 3.0 2.5 1.4 105 chr3L 12720334 intergenic not near genes chr3L 12720386 intergenic not near genes chr3L 12720439 intergenic not near genes chr3L_5_12720001 chr3L_12720001 RAL-101 634 chr3L 12894799 12894821 chr3L 12894877 12894891 6 76 2.5 3.5 3.0 1.5 92 chr3L 12894799 intergenic CG14118 + chr3L 12894845 intergenic CG14118 + chr3L 12894891 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-101 635 chr3L 12919274 12919309 chr3L 12924747 12924776 Rt1c 6 5470 5.0 2.0 3.5 1.3 5502 chr3L 12919274 intergenic not near genes chr3L 12922025 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-101 636 chr3L 12957790 12957819 chr3L 12962272 12962301 copia 5 4482 2.0 3.5 2.8 1.3 4511 chr3L 12957790 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-101 637 chr3L 12964429 12964463 chr3L 12966473 12966507 9 2044 9.0 6.5 7.8 1.0 2078 chr3L 12964429 intron Or69a - chr3L 12965468 intron Or69a - chr3L 12966507 intron Or69a - chr3L_9_12965001 chr3L_12965001 RAL-101 638 chr3L 12967144 12967158 chr3L 12967228 12967242 5 83 5.0 4.5 4.8 0.9 98 chr3L 12967144 exon Or69a - chr3L 12967193 exon Or69a - chr3L 12967242 exon Or69a - chr3L_5_12965001 chr3L_12965001 RAL-101 639 chr3L 12967159 12967168 chr3L 12967222 12967252 5 77 4.5 4.5 4.5 0.9 93 chr3L 12967159 exon Or69a - chr3L 12967206 exon Or69a - chr3L 12967252 exon Or69a - chr3L_5_12965001 chr3L_12965001 RAL-101 640 chr3L 12978760 12978783 chr3L 12978839 12978862 8 78 4.0 0.0 2.0 2.7 102 chr3L 12978760 intergenic not near genes chr3L 12978811 intergenic not near genes chr3L 12978862 intergenic not near genes chr3L_8_12975001 chr3L_12975001 RAL-101 641 chr3L 13067542 13067572 chr3L 13067618 13067648 5 76 1.0 1.0 1.0 2.5 106 chr3L 13067542 intergenic not near genes chr3L 13067595 intergenic not near genes chr3L 13067648 intergenic not near genes chr3L_5_13065001 chr3L_13065001 RAL-101 642 chr3L 13144120 13144138 chr3L 13144197 13144215 5 77 1.0 1.0 1.0 2.5 95 chr3L 13144120 intergenic not near genes chr3L 13144168 intergenic not near genes chr3L 13144215 intergenic not near genes chr3L_5_13140001 chr3L_13140001 RAL-101 643 chr3L 13159812 13159838 chr3L 13160045 13160071 5 233 2.5 2.0 2.2 1.6 259 chr3L 13159812 intergenic not near genes chr3L 13159942 intergenic not near genes chr3L 13160071 intergenic not near genes chr3L_5_13155001 chr3L_13155001 RAL-101 644 chr3L 13223215 13223237 chr3L 13223292 13223308 4 76 0.5 1.5 1.0 2.0 93 chr3L 13223215 intergenic not near genes chr3L 13223262 intergenic not near genes chr3L 13223308 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-101 645 chr3L 13267284 13267304 chr3L 13267396 13267417 4 112 3.5 1.0 2.2 1.2 133 chr3L 13267284 intron caps + chr3L 13267350 intron caps + chr3L 13267417 intron caps + chr3L_4_13265001 chr3L_13265001 RAL-101 646 chr3L 13432289 13432325 chr3L 13432388 13432424 15 98 1.0 2.5 1.8 5.4 135 chr3L 13432289 intron CG10713 - chr3L 13432356 intron CG10713 - chr3L 13432424 intron CG10713 - chr3L_15_13430001 chr3L_13430001 RAL-101 647 chr3L 13525154 13525187 chr3L 13532950 13532981 roo 12 7795 3.0 5.0 4.0 2.4 7827 chr3L 13525154 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_12_13525001 chr3L_13525001 RAL-101 648 chr3L 13629530 13629547 chr3L 13629638 13629649 8 108 1.5 2.5 2.0 2.7 119 chr3L 13629530 intron bru-3 - chr3L 13629590 intron bru-3 - chr3L 13629649 intron bru-3 - chr3L_8_13625001 chr3L_13625001 RAL-101 649 chr3L 13929598 13929623 chr3L 13929776 13929801 9 177 2.5 1.0 1.8 3.2 203 chr3L 13929598 intron Gl + chr3L 13929700 5` UTR Gl + chr3L 13929801 5` UTR Gl + chr3L_9_13925001 chr3L_13925001 RAL-101 650 chr3L 14245566 14245588 chr3L 14245659 14245661 5 90 4.0 3.5 3.8 1.0 95 chr3L 14245566 3` UTR CR44561 - chr3L 14245614 3` UTR CR44561 - chr3L 14245661 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-101 651 chr3L 14312027 14312057 chr3L 14316841 14316871 X-element 6 4812 0.0 1.5 0.8 3.3 4844 chr3L 14312027 exon fz + chr3L 14314449 intron fz + chr3L 14316871 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-101 652 chr3L 14356520 14356547 chr3L 14356600 14356612 10 78 5.5 2.0 3.8 2.1 92 chr3L 14356520 intron fz + chr3L 14356566 intron fz + chr3L 14356612 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-101 653 chr3L 14633785 14633812 chr3L 14633881 14633908 8 96 1.0 0.5 0.8 4.4 123 chr3L 14633785 intron dlp + chr3L 14633846 intron dlp + chr3L 14633908 intron dlp + chr3L_8_14630001 chr3L_14630001 RAL-101 654 chr3L 14721187 14721210 chr3L 14723022 14723052 Rt1c 4 1840 2.5 4.5 3.5 0.9 1865 chr3L 14721187 intron ome + chr3L 14722120 intron ome + chr3L 14723052 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-101 655 chr3L 14724819 14724837 chr3L 14724903 14724921 4 84 0.0 2.0 1.0 2.0 102 chr3L 14724819 intron ome + chr3L 14724870 intron ome + chr3L 14724921 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-101 656 chr3L 14922100 14922120 chr3L 14922208 14922228 5 107 5.5 1.5 3.5 1.1 128 chr3L 14922100 intron DCX-EMAP + chr3L 14922164 intron DCX-EMAP + chr3L 14922228 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-101 657 chr3L 14971198 14971228 chr3L 14973457 14973486 4 2258 5.5 16.5 11.0 0.3 2288 chr3L 14971198 intergenic not near genes chr3L 14972342 intergenic Brd + chr3L 14973486 intergenic Brd + chr3L_4_14970001 chr3L_14970001 RAL-101 658 chr3L 15053435 15053449 chr3L 15053764 15053788 6 336 1.0 2.5 1.8 2.1 353 chr3L 15053435 intron Sytbeta - chr3L 15053612 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053788 intron,3` UTR Sytbeta -,CG18649 - chr3L_6_15050001 chr3L_15050001 RAL-101 659 chr3L 15423778 15423784 chr3L 15426622 15426628 opus 4 2844 2.0 3.5 2.8 1.1 2850 chr3L 15423778 intergenic not near genes chr3L 15425203 intergenic not near genes chr3L 15426628 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-101 660 chr3L 15633078 15633215 chr3L 15633153 15633295 9 77 1.0 1.0 1.0 4.5 217 chr3L 15633078 intron comm3 - chr3L 15633186 intron comm3 - chr3L 15633295 intron comm3 - chr3L_9_15630001 chr3L_15630001 RAL-101 661 chr3L 15746066 15746095 chr3L 15746142 15746170 6 76 0.5 2.5 1.5 2.4 104 chr3L 15746066 intergenic not near genes chr3L 15746118 intergenic not near genes chr3L 15746170 intergenic not near genes chr3L_6_15745001 chr3L_15745001 RAL-101 662 chr3L 15920771 15920802 chr3L 15920868 15920899 10 97 2.5 5.5 4.0 2.0 128 chr3L 15920771 intron sff - chr3L 15920835 intron sff - chr3L 15920899 intron sff - chr3L_10_15920001 chr3L_15920001 RAL-101 663 chr3L 15948743 15948767 chr3L 15948826 15948850 5 78 5.0 2.0 3.5 1.1 107 chr3L 15948743 intron Pka-C3 - chr3L 15948796 intron Pka-C3 - chr3L 15948850 intron Pka-C3 - chr3L_5_15945001 chr3L_15945001 RAL-101 664 chr3L 16016497 16016524 chr3L 16016577 16016582 8 75 1.0 4.5 2.8 2.1 85 chr3L 16016497 intergenic not near genes chr3L 16016540 intergenic not near genes chr3L 16016582 intergenic not near genes chr3L_8_16015001 chr3L_16015001 RAL-101 665 chr3L 16027243 16027278 chr3L 16027330 16027362 9 87 2.5 3.0 2.8 2.4 119 chr3L 16027243 intron Notum + chr3L 16027302 intron Notum + chr3L 16027362 intron Notum + chr3L_9_16025001 chr3L_16025001 RAL-101 666 chr3L 16162595 16162622 chr3L 16162679 16162706 4 84 1.5 1.5 1.5 1.6 111 chr3L 16162595 intron CG5151 - chr3L 16162650 intron CG5151 - chr3L 16162706 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-101 667 chr3L 16246569 16246586 chr3L 16250243 16250260 6 3674 16.5 6.0 11.2 0.5 3691 chr3L 16246569 intergenic not near genes chr3L 16248414 intergenic not near genes chr3L 16250260 3` UTR CG13055 - chr3L_6_16245001 chr3L_16245001 RAL-101 668 chr3L 16493977 16494011 chr3L 16494494 16494523 jockey 9 515 2.5 6.5 4.5 1.6 546 chr3L 16493977 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494523 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-101 669 chr3L 16503647 16503656 chr3L 16503724 16503732 4 76 5.0 4.0 4.5 0.7 85 chr3L 16503647 intron CG43373 - chr3L 16503690 intron CG43373 - chr3L 16503732 intron CG43373 - chr3L_4_16500001 chr3L_16500001 RAL-101 670 chr3L 16563240 16563256 chr3L 16563319 16563337 4 80 0.0 0.0 0.0 4.0 97 chr3L 16563240 intergenic Mipp1 - chr3L 16563288 intergenic Mipp1 - chr3L 16563337 intergenic Mipp1 - chr3L_4_16560001 chr3L_16560001 RAL-101 671 chr3L 16610703 16610717 chr3L 16610788 16610802 4 85 2.0 2.5 2.2 1.2 99 chr3L 16610703 3` UTR Su(P) - chr3L 16610752 exon Su(P) - chr3L 16610802 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-101 672 chr3L 16760854 16760882 chr3L 16760991 16761020 5 137 0.0 1.0 0.5 3.3 166 chr3L 16760854 intergenic not near genes chr3L 16760937 intergenic not near genes chr3L 16761020 intergenic not near genes chr3L_5_16760001 chr3L_16760001 RAL-101 673 chr3L 16786973 16786999 chr3L 16787048 16787066 5 73 0.0 4.0 2.0 1.7 93 chr3L 16786973 intergenic Int6 - chr3L 16787020 intergenic Int6 - chr3L 16787066 intergenic Int6 - chr3L_5_16785001 chr3L_16785001 RAL-101 674 chr3L 16817875 16817904 chr3L 16818014 16818044 13 139 4.5 2.0 3.2 3.1 169 chr3L 16817875 intron,intron nudC +,CG13024 - chr3L 16817960 intron,intron nudC +,CG13024 - chr3L 16818044 intron,intron nudC +,CG13024 - chr3L_13_16815001 chr3L_16815001 RAL-101 675 chr3L 16873341 16873364 chr3L 16873445 16873469 5 104 1.5 1.0 1.2 2.3 128 chr3L 16873341 intron Lmpt + chr3L 16873405 intron Lmpt + chr3L 16873469 intron Lmpt + chr3L_5_16870001 chr3L_16870001 RAL-101 676 chr3L 16945727 16945759 chr3L 16954879 16954912 roo 11 9150 3.5 2.0 2.8 2.9 9185 chr3L 16945727 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-101 677 chr3L 17026803 17026822 chr3L 17026878 17026902 5 80 4.5 2.5 3.5 1.1 99 chr3L 17026803 exon Fit2 + chr3L 17026852 3` UTR Fit2 + chr3L 17026902 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-101 678 chr3L 17085005 17085034 chr3L 17094154 17094156 roo 6 9144 1.5 1.5 1.5 2.4 9151 chr3L 17085005 intron Rbp6 - chr3L 17089580 intron Rbp6 - chr3L 17094156 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-101 679 chr3L 17113870 17113901 chr3L 17113953 17113986 8 84 4.0 4.0 4.0 1.6 116 chr3L 17113870 intron Rbp6 - chr3L 17113928 intron Rbp6 - chr3L 17113986 intron Rbp6 - chr3L_8_17110001 chr3L_17110001 RAL-101 680 chr3L 17117102 17117132 chr3L 17117187 17117217 5 85 2.0 2.0 2.0 1.7 115 chr3L 17117102 intron Rbp6 - chr3L 17117160 intron Rbp6 - chr3L 17117217 intron Rbp6 - chr3L_5_17115001 chr3L_17115001 RAL-101 681 chr3L 17516983 17517000 chr3L 17524541 17524557 412 4 7558 2.0 1.5 1.8 1.4 7574 chr3L 17516983 intron CG7564 + chr3L 17520770 intron CG7564 + chr3L 17524557 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-101 682 chr3L 17743433 17743449 chr3L 17743515 17743523 4 80 2.5 4.0 3.2 1.0 90 chr3L 17743433 intron Ccn + chr3L 17743478 intron Ccn + chr3L 17743523 intron Ccn + chr3L_4_17740001 chr3L_17740001 RAL-101 683 chr3L 17769076 17769101 chr3L 17769192 17769207 5 114 2.0 1.5 1.8 1.8 131 chr3L 17769076 intergenic not near genes chr3L 17769142 intergenic not near genes chr3L 17769207 intergenic not near genes chr3L_5_17765001 chr3L_17765001 RAL-101 684 chr3L 18061062 18061093 chr3L 18061139 18061171 11 76 2.5 1.0 1.8 3.9 109 chr3L 18061062 intron Eip75B - chr3L 18061116 intron Eip75B - chr3L 18061171 intron Eip75B - chr3L_11_18060001 chr3L_18060001 RAL-101 685 chr3L 18223163 18223182 chr3L 18223246 18223265 8 83 2.0 0.5 1.2 3.6 102 chr3L 18223163 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223265 intergenic not near genes chr3L_8_18220001 chr3L_18220001 RAL-101 686 chr3L 18248952 18248985 chr3L 18249050 18249083 10 98 0.5 3.5 2.0 3.3 131 chr3L 18248952 intergenic not near genes chr3L 18249018 intergenic not near genes chr3L 18249083 intergenic not near genes chr3L_10_18245001 chr3L_18245001 RAL-101 687 chr3L 9013689 9013695 chr3L 18417066 18417066 4 9403374 21.0 10.5 15.8 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-101 688 chr3L 18456279 18456300 chr3L 18456367 18456387 5 88 1.5 1.5 1.5 2.0 108 chr3L 18456279 intergenic CR44670 - chr3L 18456333 intergenic CR44670 - chr3L 18456387 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-101 689 chr3L 18546705 18546724 chr3L 18546799 18546817 4 94 1.0 2.0 1.5 1.6 112 chr3L 18546705 intergenic not near genes chr3L 18546761 intergenic not near genes chr3L 18546817 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-101 690 chr3L 18653958 18653979 chr3L 18654047 18654059 8 84 2.0 2.5 2.2 2.5 101 chr3L 18653958 intron MYPT-75D + chr3L 18654008 intron MYPT-75D + chr3L 18654059 intron MYPT-75D + chr3L_8_18650001 chr3L_18650001 RAL-101 691 chr3L 18701136 18701158 chr3L 18701223 18701246 5 88 2.5 1.5 2.0 1.7 110 chr3L 18701136 intergenic not near genes chr3L 18701191 intergenic not near genes chr3L 18701246 intergenic not near genes chr3L_5_18700001 chr3L_18700001 RAL-101 692 chr3L 18772423 18772438 chr3L 18781093 18781119 roo 7 8679 1.0 2.5 1.8 2.5 8696 chr3L 18772423 intron ftz-f1 - chr3L 18776771 intron ftz-f1 - chr3L 18781119 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-101 693 chr3L 18833784 18833811 chr3L 18834946 18834975 1360 8 1164 1.0 2.0 1.5 3.2 1191 chr3L 18833784 intron Indy - chr3L 18834380 intron Indy - chr3L 18834975 intron Indy - chr3L_8_18830001 chr3L_18830001 RAL-101 694 chr3L 18896763 18896786 chr3L 18896898 18896921 7 134 1.0 1.0 1.0 3.5 158 chr3L 18896763 intron CG3902 - chr3L 18896842 intron CG3902 - chr3L 18896921 intron CG3902 - chr3L_7_18895001 chr3L_18895001 RAL-101 695 chr3L 18969550 18969563 chr3L 18969626 18969639 6 75 4.0 1.5 2.8 1.6 89 chr3L 18969550 intergenic not near genes chr3L 18969594 intergenic not near genes chr3L 18969639 intergenic not near genes chr3L_6_18965001 chr3L_18965001 RAL-101 696 chr3L 19008837 19008870 chr3L 19009176 19009208 jockey 7 334 1.0 1.0 1.0 3.5 371 chr3L 19008837 intron nkd - chr3L 19009022 intron nkd - chr3L 19009208 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-101 697 chr3L 19115639 19115671 chr3L 19115819 19115848 BS 9 179 6.0 3.5 4.8 1.6 209 chr3L 19115639 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115848 intron CG14082 - chr3L_9_19115001 chr3L_19115001 RAL-101 698 chr3L 19117052 19117076 chr3L 19124499 19124523 mdg1 11 7446 2.0 3.0 2.5 3.1 7471 chr3L 19117052 intron CG14082 - chr3L 19120788 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-101 699 chr3L 19208058 19208081 chr3L 19209432 19209455 Doc 7 1374 2.5 2.5 2.5 2.0 1397 chr3L 19208058 intron fz2 - chr3L 19208756 intron fz2 - chr3L 19209455 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-101 700 chr3L 19216517 19216539 chr3L 19216594 19216616 6 76 0.0 0.0 0.0 6.0 99 chr3L 19216517 intron fz2 - chr3L 19216566 intron fz2 - chr3L 19216616 intron fz2 - chr3L_6_19215001 chr3L_19215001 RAL-101 701 chr3L 19377800 19377824 chr3L 19378486 19378509 5 686 2.0 1.0 1.5 2.0 709 chr3L 19377800 intron CG32206 - chr3L 19378154 intron CG32206 - chr3L 19378509 intron CG32206 - chr3L_5_19375001 chr3L_19375001 RAL-101 702 chr3L 19479345 19479379 chr3L 19479423 19479454 10 73 2.0 1.5 1.8 3.6 109 chr3L 19479345 intergenic not near genes chr3L 19479400 intergenic not near genes chr3L 19479454 intergenic not near genes chr3L_10_19475001 chr3L_19475001 RAL-101 703 chr3L 19493902 19493918 chr3L 19494260 19494276 6 358 6.0 1.0 3.5 1.3 374 chr3L 19493902 intron CG9449 - chr3L 19494089 intron CG9449 - chr3L 19494276 intron CG9449 - chr3L_6_19490001 chr3L_19490001 RAL-101 704 chr3L 19861825 19861851 chr3L 19863611 19863639 S-element 8 1787 3.5 0.0 1.8 2.9 1814 chr3L 19861825 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_8_19860001 chr3L_19860001 RAL-101 705 chr3L 19961260 19961277 chr3L 19961335 19961348 4 75 3.0 3.5 3.2 1.0 88 chr3L 19961260 intron Ac76E + chr3L 19961304 intron Ac76E + chr3L 19961348 intron Ac76E + chr3L_4_19960001 chr3L_19960001 RAL-101 706 chr3L 19981208 19981229 chr3L 19981288 19981309 4 80 1.5 1.0 1.2 1.8 101 chr3L 19981208 intergenic CG17732 + chr3L 19981258 intergenic CG17732 + chr3L 19981309 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-101 707 chr3L 20061524 20061556 chr3L 20062183 20062215 7 659 3.0 2.5 2.8 1.8 691 chr3L 20061524 intron sNPF-R - chr3L 20061870 intron sNPF-R - chr3L 20062215 intron sNPF-R - chr3L_7_20060001 chr3L_20060001 RAL-101 708 chr3L 20143080 20143110 chr3L 20143160 20143190 9 80 1.0 2.0 1.5 3.6 110 chr3L 20143080 intergenic not near genes chr3L 20143135 intergenic not near genes chr3L 20143190 intergenic not near genes chr3L_9_20140001 chr3L_20140001 RAL-101 709 chr3L 20257343 20257359 chr3L 20258462 20258479 pogo 6 1120 1.0 4.5 2.8 1.6 1136 chr3L 20257343 intron rdgC + chr3L 20257911 intron rdgC + chr3L 20258479 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-101 710 chr3L 20283677 20283700 chr3L 20283761 20283784 5 84 4.0 1.0 2.5 1.4 107 chr3L 20283677 intron gogo - chr3L 20283730 intron gogo - chr3L 20283784 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-101 711 chr3L 20476753 20476763 chr3L 20484352 20484362 springer 5 7599 0.5 1.0 0.8 2.8 7609 chr3L 20476753 3` UTR isoQC + chr3L 20480558 intergenic not near genes chr3L 20484362 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-101 712 chr3L 20573367 20573399 chr3L 20573451 20573482 10 82 3.0 3.0 3.0 2.5 115 chr3L 20573367 intergenic not near genes chr3L 20573424 intergenic not near genes chr3L 20573482 intergenic not near genes chr3L_10_20570001 chr3L_20570001 RAL-101 713 chr3L 20590066 20590096 chr3L 20590602 20590614 412 4 531 1.0 4.5 2.8 1.1 548 chr3L 20590066 intergenic not near genes chr3L 20590340 intergenic not near genes chr3L 20590614 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-101 714 chr3L 20849286 20849297 chr3L 20849365 20849376 4 79 2.0 2.5 2.2 1.2 90 chr3L 20849286 intron CG32432 - chr3L 20849331 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-101 715 chr3L 20862795 20862822 chr3L 20862873 20862906 11 78 2.5 3.0 2.8 2.9 111 chr3L 20862795 intron CG32432 - chr3L 20862850 intron CG32432 - chr3L 20862906 intron CG32432 - chr3L_11_20860001 chr3L_20860001 RAL-101 716 chr3L 20917092 20917116 chr3L 20917167 20917193 10 75 1.5 3.0 2.2 3.1 101 chr3L 20917092 intergenic not near genes chr3L 20917142 intergenic not near genes chr3L 20917193 intergenic not near genes chr3L_10_20915001 chr3L_20915001 RAL-101 717 chr3L 21014923 21014942 chr3L 21023402 21023421 Tirant 4 8480 4.0 4.5 4.2 0.8 8498 chr3L 21014923 intron skd - chr3L 21019172 intron skd - chr3L 21023421 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-101 718 chr3L 21082217 21082237 chr3L 21082295 21082315 4 78 0.5 4.5 2.5 1.1 98 chr3L 21082217 intron ko - chr3L 21082266 intron ko - chr3L 21082315 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-101 719 chr3L 21306147 21306174 chr3L 21315306 21315313 roo 5 9155 0.5 0.5 0.5 3.3 9166 chr3L 21306147 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310730 intron Pc - chr3L 21315313 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-101 720 chr3L 21415137 21415155 chr3L 21415220 21415238 9 83 4.0 2.5 3.2 2.1 101 chr3L 21415137 intron rgn + chr3L 21415188 intron rgn + chr3L 21415238 intron rgn + chr3L_9_21415001 chr3L_21415001 RAL-101 721 chr3L 21498835 21498866 chr3L 21500471 21500502 1360 8 1633 3.0 1.0 2.0 2.7 1667 chr3L 21498835 intron Glg1 - chr3L 21499668 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-101 722 chr3L 21749328 21749350 chr3L 21754488 21754510 Doc 5 5159 2.0 5.0 3.5 1.1 5182 chr3L 21749328 intron Syn1 - chr3L 21751919 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-101 723 chr3L 22006763 22006786 chr3L 22006887 22006910 6 124 1.5 3.0 2.2 1.9 147 chr3L 22006763 intergenic not near genes chr3L 22006836 intergenic not near genes chr3L 22006910 intergenic not near genes chr3L_6_22005001 chr3L_22005001 RAL-101 724 chr3L 22008847 22008880 chr3L 22008924 22008935 11 72 2.0 2.5 2.2 3.4 88 chr3L 22008847 intergenic not near genes chr3L 22008891 intergenic not near genes chr3L 22008935 intergenic not near genes chr3L_11_22005001 chr3L_22005001 RAL-101 725 chr3L 22122169 22122200 chr3L 22122513 22122543 8 342 1.0 3.5 2.2 2.5 374 chr3L 22122169 5` UTR CR45236 + chr3L 22122356 intergenic CR45236 +,CR45235 + chr3L 22122543 intergenic CR45235 +,CR45236 + chr3L_8_22120001 chr3L_22120001 RAL-101 726 chr3L 22137665 22137679 chr3L 22137751 22137766 4 87 0.5 2.5 1.5 1.6 101 chr3L 22137665 intron olf413 + chr3L 22137716 intron olf413 + chr3L 22137766 intron olf413 + chr3L_4_22135001 chr3L_22135001 RAL-101 727 chr3L 22241310 22241316 chr3L 22241378 22241398 4 72 3.0 3.0 3.0 1.0 88 chr3L 22241310 intron olf413 + chr3L 22241354 intron olf413 + chr3L 22241398 intron olf413 + chr3L_4_22240001 chr3L_22240001 RAL-101 728 chr3L 22241317 22241320 chr3L 22241375 22241402 4 69 2.0 3.0 2.5 1.1 85 chr3L 22241317 intron olf413 + chr3L 22241360 intron olf413 + chr3L 22241402 intron olf413 + chr3L_4_22240001 chr3L_22240001 RAL-101 729 chr3L 22333039 22333072 chr3L 22333120 22333153 6 80 2.5 3.0 2.8 1.6 114 chr3L 22333039 intron Ten-m - chr3L 22333096 intron Ten-m - chr3L 22333153 intron Ten-m - chr3L_6_22330001 chr3L_22330001 RAL-101 730 chr3L 22447196 22447234 chr3L 22447287 22447325 5 91 2.0 0.0 1.0 2.5 129 chr3L 22447196 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447325 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-101 731 chr3L 22523537 22523569 chr3L 22523711 22523743 10 174 1.5 3.5 2.5 2.9 206 chr3L 22523537 intergenic not near genes chr3L 22523640 intergenic not near genes chr3L 22523743 intergenic not near genes chr3L_10_22520001 chr3L_22520001 RAL-101 732 chr3L 22555770 22555800 chr3L 22563239 22563270 blood 10 7466 2.5 1.5 2.0 3.3 7500 chr3L 22555770 intergenic not near genes chr3L 22559520 intergenic not near genes chr3L 22563270 intergenic not near genes chr3L_10_22555001 chr3L_22555001 RAL-101 733 chr3L 22577632 22577646 chr3L 22582404 22582414 Doc 7 4783 5.5 3.0 4.2 1.3 4782 chr3L 22577632 intergenic not near genes chr3L 22580023 intergenic not near genes chr3L 22582414 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-101 734 chr3L 22617188 22617222 chr3L 22624640 22624673 blood 9 7450 3.0 1.0 2.0 3.0 7485 chr3L 22617188 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624673 intron CG14459 - chr3L_9_22620001 chr3L_22620001 RAL-101 735 chr3L 22761384 22761399 chr3L 22766818 22766832 Ivk 5 5433 1.0 1.0 1.0 2.5 5448 chr3L 22761384 intron SPoCk + chr3L 22764108 intron SPoCk + chr3L 22766832 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-101 736 chr3L 22838590 22838611 chr3L 22838670 22838692 8 80 2.5 1.5 2.0 2.7 102 chr3L 22838590 intergenic CG11226 + chr3L 22838641 intergenic CG11226 + chr3L 22838692 intergenic not near genes chr3L_8_22835001 chr3L_22835001 RAL-101 737 chr3L 22909018 22909054 chr3L 22909109 22909145 14 90 1.0 1.5 1.2 6.4 127 chr3L 22909018 intergenic CR45661 + chr3L 22909082 intergenic CR45661 + chr3L 22909145 intergenic CR45661 + chr3L_14_22905001 chr3L_22905001 RAL-101 738 chr3L 22974624 22974653 chr3L 22974791 22974824 9 170 2.5 3.0 2.8 2.4 200 chr3L 22974624 intergenic not near genes chr3L 22974724 intergenic not near genes chr3L 22974824 intergenic not near genes chr3L_9_22970001 chr3L_22970001 RAL-101 739 chr3L 22989862 22989887 chr3L 22996836 22996861 297 4 6974 1.5 1.0 1.2 1.8 6999 chr3L 22989862 intergenic not near genes chr3L 22993362 intergenic not near genes chr3L 22996861 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-101 740 chr3L 23436986 23437016 chr3L 23437133 23437157 6 146 3.5 2.0 2.8 1.6 171 chr3L 23436986 intergenic not near genes chr3L 23437072 intergenic not near genes chr3L 23437157 intergenic not near genes chr3L_6_23435001 chr3L_23435001 RAL-101 741 chr3L 23875529 23875552 chr3L 23875610 23875633 7 81 6.5 5.5 6.0 1.0 104 chr3L 23875529 intron CG40470 - chr3L 23875581 intron CG40470 - chr3L 23875633 intron CG40470 - chr3L_7_23875001 chr3L_23875001 RAL-101 742 chr3L 24168790 24168820 chr3L 24176118 24176135 ZAM 4 7324 2.0 6.0 4.0 0.8 7345 chr3L 24168790 intron Snap25 + chr3L 24172462 intron Snap25 + chr3L 24176135 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-101 743 chr3L 27413046 27413059 chr3L 27413116 27413148 5 82 0.0 2.0 1.0 2.5 102 chr3L 27413046 intron Dbp80 + chr3L 27413097 intron Dbp80 + chr3L 27413148 intron Dbp80 + chr3L_5_27410001 chr3L_27410001 RAL-101 744 chr3R 1866438 1866442 chr3R 1866797 1866802 4 360 9.5 7.0 8.2 0.4 364 chr3R 1866438 intron CG42623 + chr3R 1866620 intron CG42623 + chr3R 1866802 intron CG42623 + chr3R_4_1865001 chr3R_1865001 RAL-101 745 chr3R 2534158 2534167 chr3R 2541702 2541735 5 7561 11.5 12.0 11.8 0.4 7577 chr3R 2534158 intergenic not near genes chr3R 2537946 intergenic not near genes chr3R 2541735 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-101 746 chr3R 4161543 4161571 chr3R 4161620 4161648 7 76 2.0 2.0 2.0 2.3 105 chr3R 4161543 3` UTR CG40198 - chr3R 4161596 exon CG40198 - chr3R 4161648 exon CG40198 - chr3R_7_4160001 chr3R_4160001 RAL-101 747 chr3R 4408410 4408441 chr3R 4412714 4412745 Juan 6 4304 2.5 1.0 1.8 2.1 4335 chr3R 4408410 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412745 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-101 748 chr3R 4609548 4609579 chr3R 4610712 4610743 1360 8 1164 2.5 2.0 2.2 2.5 1195 chr3R 4609548 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610743 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-101 749 chr3R 4682759 4682780 chr3R 4683121 4683142 5 361 6.0 0.5 3.2 1.2 383 chr3R 4682759 intron CG43427 + chr3R 4682950 intron CG43427 + chr3R 4683142 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-101 750 chr3R 4733686 4733696 chr3R 4733810 4733820 4 124 1.0 0.5 0.8 2.2 134 chr3R 4733686 intergenic not near genes chr3R 4733753 intergenic not near genes chr3R 4733820 intergenic not near genes chr3R_4_4730001 chr3R_4730001 RAL-101 751 chr3R 4753248 4753269 chr3R 4757550 4757572 F-element 9 4302 4.5 5.0 4.8 1.6 4324 chr3R 4753248 intron,intron atms +,CG44098 - chr3R 4755410 intron,intron atms +,CG44098 - chr3R 4757572 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-101 752 chr3R 4796134 4796144 chr3R 4796244 4796266 5 117 1.5 2.0 1.8 1.8 132 chr3R 4796134 intron ctrip - chr3R 4796200 intron ctrip - chr3R 4796266 intron ctrip - chr3R_5_4795001 chr3R_4795001 RAL-101 753 chr3R 4861566 4861598 chr3R 4861647 4861679 12 81 5.5 1.5 3.5 2.7 113 chr3R 4861566 intron opa + chr3R 4861622 intron opa + chr3R 4861679 intron opa + chr3R_12_4860001 chr3R_4860001 RAL-101 754 chr3R 4922342 4922362 chr3R 4922421 4922441 12 78 2.5 1.5 2.0 4.0 99 chr3R 4922342 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922441 intron Cdep + chr3R_12_4920001 chr3R_4920001 RAL-101 755 chr3R 4963437 4963458 chr3R 4963549 4963578 8 115 4.0 4.5 4.2 1.5 141 chr3R 4963437 intergenic not near genes chr3R 4963508 intergenic not near genes chr3R 4963578 intergenic not near genes chr3R_8_4960001 chr3R_4960001 RAL-101 756 chr3R 5029587 5029602 chr3R 5029978 5029989 4 389 1.0 4.5 2.8 1.1 402 chr3R 5029587 intergenic not near genes chr3R 5029788 intergenic not near genes chr3R 5029989 intergenic not near genes chr3R_4_5025001 chr3R_5025001 RAL-101 757 chr3R 5045845 5045863 chr3R 5052945 5052965 HMS-Beagle 4 7101 3.5 0.5 2.0 1.3 7120 chr3R 5045845 intron CR43635 - chr3R 5049405 intergenic not near genes chr3R 5052965 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-101 758 chr3R 5271175 5271190 chr3R 5271251 5271269 5 78 2.5 3.5 3.0 1.2 94 chr3R 5271175 intergenic not near genes chr3R 5271222 intergenic not near genes chr3R 5271269 intergenic not near genes chr3R_5_5270001 chr3R_5270001 RAL-101 759 chr3R 5278089 5278113 chr3R 5278170 5278194 7 81 4.0 2.0 3.0 1.8 105 chr3R 5278089 intron mtd - chr3R 5278142 intron mtd - chr3R 5278194 intron mtd - chr3R_7_5275001 chr3R_5275001 RAL-101 760 chr3R 5338394 5338429 chr3R 5343571 5343606 Rt1c 11 5177 2.5 4.0 3.2 2.6 5212 chr3R 5338394 intron mtd - chr3R 5341000 intron mtd - chr3R 5343606 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-101 761 chr3R 5395916 5395916 chr3R 5397833 5397860 10 1920 15.5 18.5 17.0 0.6 1944 chr3R 5395916 intron CG1172 + chr3R 5396888 3` UTR CG1172 + chr3R 5397860 3` UTR,exon CG1172 +,Or83a - chr3R_10_5395001 chr3R_5395001 RAL-101 762 chr3R 5400506 5400541 chr3R 5400589 5400624 9 83 1.0 0.0 0.5 6.0 118 chr3R 5400506 intergenic CG2663 - chr3R 5400565 intergenic CG2663 - chr3R 5400624 3` UTR CG2663 - chr3R_9_5400001 chr3R_5400001 RAL-101 763 chr3R 5404973 5405005 chr3R 5405050 5405082 12 76 3.5 0.5 2.0 4.0 109 chr3R 5404973 intergenic not near genes chr3R 5405028 intergenic not near genes chr3R 5405082 intergenic not near genes chr3R_12_5405001 chr3R_5405001 RAL-101 764 chr3R 5429927 5429943 chr3R 5430080 5430093 6 151 4.5 3.5 4.0 1.2 166 chr3R 5429927 intron CG14669 + chr3R 5430010 intron CG14669 + chr3R 5430093 intron CG14669 + chr3R_6_5430001 chr3R_5430001 RAL-101 765 chr3R 5429945 5429946 chr3R 5430075 5430098 4 144 4.5 3.0 3.8 0.8 153 chr3R 5429945 intron CG14669 + chr3R 5430022 intron CG14669 + chr3R 5430098 intron CG14669 + chr3R_4_5430001 chr3R_5430001 RAL-101 766 chr3R 5680796 5680813 chr3R 5680879 5680897 4 84 2.5 2.5 2.5 1.1 101 chr3R 5680796 3` UTR Rab23 - chr3R 5680846 3` UTR Rab23 - chr3R 5680897 3` UTR Rab23 - chr3R_4_5680001 chr3R_5680001 RAL-101 767 chr3R 5688781 5688811 chr3R 5688902 5688932 5 120 2.0 3.5 2.8 1.3 151 chr3R 5688781 intron plx + chr3R 5688856 intron plx + chr3R 5688932 intron plx + chr3R_5_5685001 chr3R_5685001 RAL-101 768 chr3R 5746021 5746046 chr3R 5746258 5746287 pogo 5 240 2.5 3.0 2.8 1.3 266 chr3R 5746021 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-101 769 chr3R 5822376 5822413 chr3R 5823543 5823580 1360 12 1167 1.5 5.5 3.5 2.7 1204 chr3R 5822376 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_12_5820001 chr3R_5820001 RAL-101 770 chr3R 5988120 5988142 chr3R 5988204 5988226 9 84 1.0 1.5 1.2 4.1 106 chr3R 5988120 intergenic not near genes chr3R 5988173 intergenic not near genes chr3R 5988226 intergenic not near genes chr3R_9_5985001 chr3R_5985001 RAL-101 771 chr3R 6158507 6158536 chr3R 6167090 6167119 Tirant 8 8578 3.5 2.5 3.0 2.0 8612 chr3R 6158507 intergenic not near genes chr3R 6162813 intergenic not near genes chr3R 6167119 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-101 772 chr3R 6187736 6187771 chr3R 6195513 6195548 6 7780 9.5 6.0 7.8 0.7 7812 chr3R 6187736 intron NPFR + chr3R 6191642 intron NPFR + chr3R 6195548 intergenic NPFR + chr3R_6_6190001 chr3R_6190001 RAL-101 773 chr3R 6206280 6206317 chr3R 6206497 6206534 BS 10 217 6.5 3.5 5.0 1.7 254 chr3R 6206280 exon Osi24 + chr3R 6206407 intron Osi24 + chr3R 6206534 intron Osi24 + chr3R_10_6205001 chr3R_6205001 RAL-101 774 chr3R 6428813 6428840 chr3R 6428915 6428942 4 102 0.5 2.0 1.2 1.8 129 chr3R 6428813 intron gpp + chr3R 6428878 intron gpp + chr3R 6428942 intron gpp + chr3R_4_6425001 chr3R_6425001 RAL-101 775 chr3R 6461597 6461609 chr3R 6461677 6461689 4 80 1.0 3.0 2.0 1.3 92 chr3R 6461597 intergenic not near genes chr3R 6461643 intergenic not near genes chr3R 6461689 intergenic not near genes chr3R_4_6460001 chr3R_6460001 RAL-101 776 chr3R 6532124 6532131 chr3R 6532480 6532505 4 369 2.5 3.0 2.8 1.1 381 chr3R 6532124 intron dpr11 - chr3R 6532314 intron dpr11 - chr3R 6532505 intron dpr11 - chr3R_4_6530001 chr3R_6530001 RAL-101 777 chr3R 6639912 6639933 chr3R 6639989 6640011 7 77 2.0 0.5 1.2 3.2 99 chr3R 6639912 intergenic not near genes chr3R 6639962 intergenic not near genes chr3R 6640011 intergenic not near genes chr3R_7_6635001 chr3R_6635001 RAL-101 778 chr3R 6689341 6689368 chr3R 6689419 6689449 6 81 2.5 1.0 1.8 2.1 108 chr3R 6689341 intergenic Ccp84Af - chr3R 6689395 intergenic Ccp84Af - chr3R 6689449 intergenic Ccp84Af - chr3R_6_6685001 chr3R_6685001 RAL-101 779 chr3R 6725167 6725193 chr3R 6725302 6725328 5 135 0.5 7.0 3.8 1.0 161 chr3R 6725167 intron pb - chr3R 6725248 intron pb - chr3R 6725328 intron pb - chr3R_5_6725001 chr3R_6725001 RAL-101 780 chr3R 6737498 6737528 chr3R 6739285 6739315 Doc 5 1787 1.5 2.5 2.0 1.7 1817 chr3R 6737498 intron pb - chr3R 6738406 intron pb - chr3R 6739315 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-101 781 chr3R 6759602 6759623 chr3R 6759679 6759698 5 77 2.5 1.5 2.0 1.7 96 chr3R 6759602 intergenic bcd - chr3R 6759650 intergenic bcd - chr3R 6759698 intergenic bcd - chr3R_5_6755001 chr3R_6755001 RAL-101 782 chr3R 6862219 6862250 chr3R 6862306 6862336 8 87 1.5 1.0 1.2 3.6 117 chr3R 6862219 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862336 intergenic not near genes chr3R_8_6860001 chr3R_6860001 RAL-101 783 chr3R 6891246 6891269 chr3R 6891315 6891345 5 74 0.0 2.0 1.0 2.5 99 chr3R 6891246 intergenic not near genes chr3R 6891296 intergenic not near genes chr3R 6891345 intergenic not near genes chr3R_5_6890001 chr3R_6890001 RAL-101 784 chr3R 7026857 7026889 chr3R 7026941 7026973 4 84 3.5 1.0 2.2 1.2 116 chr3R 7026857 intergenic not near genes chr3R 7026915 intergenic not near genes chr3R 7026973 intergenic not near genes chr3R_4_7025001 chr3R_7025001 RAL-101 785 chr3R 7036760 7036786 chr3R 7036839 7036865 4 78 0.5 1.0 0.8 2.2 105 chr3R 7036760 intergenic not near genes chr3R 7036812 intergenic not near genes chr3R 7036865 intergenic not near genes chr3R_4_7035001 chr3R_7035001 RAL-101 786 chr3R 7092783 7092812 chr3R 7093347 7093374 7 563 2.5 1.5 2.0 2.3 591 chr3R 7092783 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093374 3` UTR CR43685 - chr3R_7_7090001 chr3R_7090001 RAL-101 787 chr3R 7103285 7103310 chr3R 7103361 7103386 7 76 4.0 4.0 4.0 1.4 101 chr3R 7103285 intron Alh - chr3R 7103336 intron Alh - chr3R 7103386 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-101 788 chr3R 7385584 7385616 chr3R 7385660 7385689 12 74 2.5 2.5 2.5 3.4 105 chr3R 7385584 intergenic not near genes chr3R 7385636 intergenic not near genes chr3R 7385689 intergenic not near genes chr3R_12_7385001 chr3R_7385001 RAL-101 789 chr3R 7447991 7448009 chr3R 7448069 7448087 4 78 2.5 3.0 2.8 1.1 96 chr3R 7447991 intergenic not near genes chr3R 7448039 intergenic not near genes chr3R 7448087 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-101 790 chr3R 7464692 7464723 chr3R 7464778 7464809 8 85 2.0 3.5 2.8 2.1 117 chr3R 7464692 intergenic not near genes chr3R 7464750 intergenic not near genes chr3R 7464809 intergenic not near genes chr3R_8_7460001 chr3R_7460001 RAL-101 791 chr3R 7677913 7677937 chr3R 7678026 7678050 5 111 1.0 0.5 0.8 2.8 137 chr3R 7677913 intron Nlg1 + chr3R 7677982 intron Nlg1 + chr3R 7678050 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-101 792 chr3R 7680864 7680874 chr3R 7681493 7681505 4 630 0.5 2.0 1.2 1.8 641 chr3R 7680864 intron Nlg1 + chr3R 7681184 intron Nlg1 + chr3R 7681505 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-101 793 chr3R 7729466 7729496 chr3R 7737404 7737434 Stalker2 7 7938 1.0 3.0 2.0 2.3 7968 chr3R 7729466 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-101 794 chr3R 7772276 7772298 chr3R 7772524 7772546 5 247 0.0 2.5 1.2 2.3 270 chr3R 7772276 intergenic not near genes chr3R 7772411 intergenic not near genes chr3R 7772546 intergenic not near genes chr3R_5_7770001 chr3R_7770001 RAL-101 795 chr3R 8144763 8144792 chr3R 8144847 8144864 4 80 1.5 1.5 1.5 1.6 101 chr3R 8144763 intergenic not near genes chr3R 8144814 intergenic not near genes chr3R 8144864 intergenic not near genes chr3R_4_8140001 chr3R_8140001 RAL-101 796 chr3R 8207557 8207582 chr3R 8208400 8208427 F-element 5 844 2.0 0.5 1.2 2.3 870 chr3R 8207557 intergenic not near genes chr3R 8207992 intergenic not near genes chr3R 8208427 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-101 797 chr3R 8303197 8303204 chr3R 8305432 8305440 4 2235 26.0 16.5 21.2 0.2 2243 chr3R 8303197 exon nac - chr3R 8304318 3` UTR Sgt1 - chr3R 8305440 intergenic Sgt1 - chr3R_4_8300001 chr3R_8300001 RAL-101 798 chr3R 8326547 8326574 chr3R 8326644 8326651 7 92 3.5 3.5 3.5 1.6 104 chr3R 8326547 intron Poxm - chr3R 8326599 intron Poxm - chr3R 8326651 intron Poxm - chr3R_7_8325001 chr3R_8325001 RAL-101 799 chr3R 8339246 8339247 chr3R 21907534 21907536 11 13568289 13.5 17.0 15.2 0.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-101 800 chr3R 8363224 8363232 chr3R 8363282 8363297 6 62 5.5 3.5 4.5 1.1 73 chr3R 8363224 exon CG7963 + chr3R 8363260 exon CG7963 + chr3R 8363297 exon CG7963 + chr3R_6_8360001 chr3R_8360001 RAL-101 801 chr3R 8393577 8393595 chr3R 8393659 8393678 5 78 2.5 1.5 2.0 1.7 101 chr3R 8393577 intron CG45263 - chr3R 8393628 intron CG45263 - chr3R 8393678 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-101 802 chr3R 8403005 8403039 chr3R 8412171 8412205 roo 9 9166 4.0 4.5 4.2 1.7 9200 chr3R 8403005 intron CG45263 - chr3R 8407605 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_9_8405001 chr3R_8405001 RAL-101 803 chr3R 8439509 8439524 chr3R 8439585 8439600 5 75 6.0 4.0 5.0 0.8 91 chr3R 8439509 intron CG45263 - chr3R 8439554 intron CG45263 - chr3R 8439600 intron CG45263 - chr3R_5_8435001 chr3R_8435001 RAL-101 804 chr3R 8526520 8526540 chr3R 8526596 8526617 6 76 1.0 1.5 1.2 2.7 97 chr3R 8526520 3` UTR CG31259 + chr3R 8526568 3` UTR CG31259 + chr3R 8526617 3` UTR CG31259 + chr3R_6_8525001 chr3R_8525001 RAL-101 805 chr3R 8537825 8537857 chr3R 8537908 8537940 12 83 3.0 5.5 4.2 2.3 115 chr3R 8537825 intergenic not near genes chr3R 8537882 intergenic not near genes chr3R 8537940 intergenic not near genes chr3R_12_8535001 chr3R_8535001 RAL-101 806 chr3R 8570481 8570511 chr3R 8575117 8575147 HMS-Beagle 7 4636 2.0 2.0 2.0 2.3 4666 chr3R 8570481 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575147 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-101 807 chr3R 8576164 8576191 chr3R 8576335 8576361 5 171 3.0 2.0 2.5 1.4 197 chr3R 8576164 intergenic not near genes chr3R 8576262 intergenic not near genes chr3R 8576361 intergenic not near genes chr3R_5_8575001 chr3R_8575001 RAL-101 808 chr3R 8601769 8601795 chr3R 8610921 8610948 roo 8 9151 5.5 3.5 4.5 1.5 9179 chr3R 8601769 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610948 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-101 809 chr3R 8669335 8669363 chr3R 8669426 8669454 6 91 2.0 0.0 1.0 3.0 119 chr3R 8669335 intron CG8036 + chr3R 8669394 intron CG8036 + chr3R 8669454 intron CG8036 + chr3R_6_8665001 chr3R_8665001 RAL-101 810 chr3R 8798665 8798681 chr3R 8798748 8798764 4 83 0.5 3.0 1.8 1.4 99 chr3R 8798665 intron,intron Pif1A -,Pif1B - chr3R 8798714 intron,intron Pif1A -,Pif1B - chr3R 8798764 intron,intron Pif1A -,Pif1B - chr3R_4_8795001 chr3R_8795001 RAL-101 811 chr3R 8811226 8811256 chr3R 8811318 8811335 5 89 0.0 2.0 1.0 2.5 109 chr3R 8811226 intron CG9837 - chr3R 8811280 intron CG9837 - chr3R 8811335 intron CG9837 - chr3R_5_8810001 chr3R_8810001 RAL-101 812 chr3R 9082044 9082068 chr3R 9082138 9082162 7 94 2.0 0.0 1.0 3.5 118 chr3R 9082044 intron pum - chr3R 9082103 intron pum - chr3R 9082162 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-101 813 chr3R 9087319 9087350 chr3R 9087398 9087429 6 79 2.5 3.0 2.8 1.6 110 chr3R 9087319 intron pum - chr3R 9087374 intron pum - chr3R 9087429 intron pum - chr3R_6_9085001 chr3R_9085001 RAL-101 814 chr3R 9101838 9101865 chr3R 9101936 9101963 7 96 1.0 1.5 1.2 3.2 125 chr3R 9101838 intron pum - chr3R 9101900 intron pum - chr3R 9101963 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-101 815 chr3R 9141145 9141172 chr3R 9141223 9141255 5 82 1.0 2.0 1.5 2.0 110 chr3R 9141145 intron pum - chr3R 9141200 intron pum - chr3R 9141255 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-101 816 chr3R 9260246 9260265 chr3R 9260332 9260352 7 87 2.0 1.0 1.5 2.8 106 chr3R 9260246 exon Ibf1 + chr3R 9260299 3` UTR Ibf1 + chr3R 9260352 3` UTR Ibf1 + chr3R_7_9260001 chr3R_9260001 RAL-101 817 chr3R 9278786 9278811 chr3R 9284046 9284069 Rt1a 6 5260 2.5 7.0 4.8 1.0 5283 chr3R 9278786 intergenic not near genes chr3R 9281428 intergenic not near genes chr3R 9284069 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-101 818 chr3R 9301178 9301204 chr3R 9301267 9301293 10 89 0.5 2.0 1.2 4.5 115 chr3R 9301178 intron CG8861 - chr3R 9301236 intron CG8861 - chr3R 9301293 intron CG8861 - chr3R_10_9300001 chr3R_9300001 RAL-101 819 chr3R 9364127 9364161 chr3R 9364682 9364701 5 552 1.5 3.0 2.2 1.6 574 chr3R 9364127 exon CG18473 + chr3R 9364414 exon CG18473 + chr3R 9364701 exon CG18473 + chr3R_5_9360001 chr3R_9360001 RAL-101 820 chr3R 9390541 9390561 chr3R 9390625 9390645 7 84 0.0 1.0 0.5 4.7 104 chr3R 9390541 intron FER - chr3R 9390593 intron FER - chr3R 9390645 intron FER - chr3R_7_9390001 chr3R_9390001 RAL-101 821 chr3R 9566966 9566985 chr3R 9568949 9568968 5 1983 19.0 11.0 15.0 0.3 2002 chr3R 9566966 exon CG16789 + chr3R 9567967 exon CG16789 + chr3R 9568968 intron CG16789 + chr3R_5_9565001 chr3R_9565001 RAL-101 822 chr3R 9601470 9601490 chr3R 9601588 9601607 6 118 0.5 1.5 1.0 3.0 137 chr3R 9601470 intron CG8312 + chr3R 9601538 intron CG8312 + chr3R 9601607 intron CG8312 + chr3R_6_9600001 chr3R_9600001 RAL-101 823 chr3R 9644582 9644610 chr3R 9644663 9644691 6 80 1.5 1.0 1.2 2.7 109 chr3R 9644582 intron Dh44 + chr3R 9644636 intron Dh44 + chr3R 9644691 intron Dh44 + chr3R_6_9640001 chr3R_9640001 RAL-101 824 chr3R 9781166 9781197 chr3R 9787179 9787210 6 6015 14.5 19.5 17.0 0.3 6044 chr3R 9781166 3` UTR,intron CR31514 -,CG12947 + chr3R 9784188 intron MtnA - chr3R 9787210 3` UTR CG8500 + chr3R_6_9780001 chr3R_9780001 RAL-101 825 chr3R 9836870 9836901 chr3R 9836958 9836989 9 84 2.5 3.5 3.0 2.2 119 chr3R 9836870 intron Teh1 - chr3R 9836930 intron Teh1 - chr3R 9836989 intron Teh1 - chr3R_9_9835001 chr3R_9835001 RAL-101 826 chr3R 9898790 9898817 chr3R 9898882 9898909 4 92 3.0 1.0 2.0 1.3 119 chr3R 9898790 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898909 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-101 827 chr3R 10430677 10430700 chr3R 10430766 10430789 8 89 1.5 3.5 2.5 2.3 112 chr3R 10430677 intergenic not near genes chr3R 10430733 intergenic not near genes chr3R 10430789 intergenic not near genes chr3R_8_10430001 chr3R_10430001 RAL-101 828 chr3R 10651815 10651844 chr3R 10651914 10651943 7 98 2.5 1.5 2.0 2.3 128 chr3R 10651815 intergenic not near genes chr3R 10651879 intergenic not near genes chr3R 10651943 intergenic not near genes chr3R_7_10650001 chr3R_10650001 RAL-101 829 chr3R 10804173 10804190 chr3R 10811705 10811722 17.6 4 7532 0.5 2.0 1.2 1.8 7549 chr3R 10804173 intergenic CG14692 - chr3R 10807948 intergenic not near genes chr3R 10811722 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-101 830 chr3R 10868594 10868625 chr3R 10868668 10868695 6 68 2.5 2.0 2.2 1.9 101 chr3R 10868594 5` UTR SelR - chr3R 10868644 intergenic SelR -,Tsp86D + chr3R 10868695 intergenic Tsp86D +,SelR - chr3R_6_10865001 chr3R_10865001 RAL-101 831 chr3R 10870867 10870899 chr3R 10870948 10870979 7 81 2.0 3.0 2.5 2.0 112 chr3R 10870867 intergenic Fdh -,Tsp86D + chr3R 10870923 3` UTR Fdh - chr3R 10870979 3` UTR Fdh - chr3R_7_10870001 chr3R_10870001 RAL-101 832 chr3R 11054577 11054603 chr3R 11054674 11054682 8 95 2.0 0.5 1.2 3.6 105 chr3R 11054577 intergenic not near genes chr3R 11054630 intergenic not near genes chr3R 11054682 intergenic not near genes chr3R_8_11050001 chr3R_11050001 RAL-101 833 chr3R 11085462 11085486 chr3R 11085539 11085563 5 77 0.0 0.5 0.2 4.2 101 chr3R 11085462 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085563 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-101 834 chr3R 11102331 11102354 chr3R 11102412 11102431 5 80 1.0 5.5 3.2 1.2 100 chr3R 11102331 intergenic not near genes chr3R 11102381 intergenic not near genes chr3R 11102431 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-101 835 chr3R 11174604 11174612 chr3R 11175309 11175325 5 710 13.0 14.0 13.5 0.3 721 chr3R 11174604 exon Ugt86Dj - chr3R 11174964 intron Ugt86Dj - chr3R 11175325 exon Ugt86Dj - chr3R_5_11170001 chr3R_11170001 RAL-101 836 chr3R 11192283 11192315 chr3R 11192929 11192962 9 645 2.5 5.0 3.8 1.9 679 chr3R 11192283 intergenic not near genes chr3R 11192622 intergenic not near genes chr3R 11192962 intergenic not near genes chr3R_9_11190001 chr3R_11190001 RAL-101 837 chr3R 11313233 11313260 chr3R 11313322 11313349 7 89 0.0 3.0 1.5 2.8 116 chr3R 11313233 intergenic not near genes chr3R 11313291 intergenic not near genes chr3R 11313349 intergenic not near genes chr3R_7_11310001 chr3R_11310001 RAL-101 838 chr3R 11379235 11379257 chr3R 11388390 11388412 roo 4 9155 3.0 4.0 3.5 0.9 9177 chr3R 11379235 intron pros + chr3R 11383824 intron pros + chr3R 11388412 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-101 839 chr3R 11612442 11612467 chr3R 11612519 11612544 5 77 2.5 2.0 2.2 1.6 102 chr3R 11612442 intron Jupiter - chr3R 11612493 intron Jupiter - chr3R 11612544 intron Jupiter - chr3R_5_11610001 chr3R_11610001 RAL-101 840 chr3R 11656505 11656524 chr3R 11656583 11656604 7 79 3.5 1.0 2.2 2.2 99 chr3R 11656505 5` UTR CG42327 + chr3R 11656554 5` UTR CG42327 + chr3R 11656604 5` UTR CG42327 + chr3R_7_11655001 chr3R_11655001 RAL-101 841 chr3R 11834172 11834197 chr3R 11834252 11834280 12 82 3.5 1.0 2.2 3.8 108 chr3R 11834172 intron CG6959 - chr3R 11834226 intron CG6959 - chr3R 11834280 intron CG6959 - chr3R_12_11830001 chr3R_11830001 RAL-101 842 chr3R 11840063 11840081 chr3R 11840160 11840178 4 97 2.5 0.0 1.2 1.8 115 chr3R 11840063 intron CG6959 - chr3R 11840120 intron CG6959 - chr3R 11840178 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-101 843 chr3R 11841077 11841097 chr3R 11846267 11846286 BS 5 5190 4.0 4.5 4.2 1.0 5209 chr3R 11841077 intron CG6959 - chr3R 11843682 intron CG6959 - chr3R 11846286 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-101 844 chr3R 11957854 11957880 chr3R 11958137 11958163 S-element 4 283 0.0 0.0 0.0 4.0 309 chr3R 11957854 intergenic not near genes chr3R 11958008 intergenic not near genes chr3R 11958163 intergenic not near genes chr3R_4_11955001 chr3R_11955001 RAL-101 845 chr3R 12032530 12032555 chr3R 12032613 12032639 9 84 2.0 5.5 3.8 1.9 109 chr3R 12032530 intergenic not near genes chr3R 12032584 intergenic not near genes chr3R 12032639 intergenic not near genes chr3R_9_12030001 chr3R_12030001 RAL-101 846 chr3R 12080864 12080896 chr3R 12080941 12080974 9 75 1.5 4.0 2.8 2.4 110 chr3R 12080864 intron CG14741 - chr3R 12080919 intron CG14741 - chr3R 12080974 intron CG14741 - chr3R_9_12080001 chr3R_12080001 RAL-101 847 chr3R 12102875 12102883 chr3R 12102976 12102984 4 101 4.5 4.0 4.2 0.8 109 chr3R 12102875 intron dpr17 + chr3R 12102930 intron dpr17 + chr3R 12102984 intron dpr17 + chr3R_4_12100001 chr3R_12100001 RAL-101 848 chr3R 12202292 12202317 chr3R 12202400 12202426 10 109 3.0 3.0 3.0 2.5 134 chr3R 12202292 intergenic not near genes chr3R 12202359 intergenic not near genes chr3R 12202426 intergenic not near genes chr3R_10_12200001 chr3R_12200001 RAL-101 849 chr3R 12274670 12274696 chr3R 12274794 12274822 10 124 5.5 1.5 3.5 2.2 152 chr3R 12274670 intron svp + chr3R 12274746 intron svp + chr3R 12274822 intron svp + chr3R_10_12270001 chr3R_12270001 RAL-101 850 chr3R 12599382 12599402 chr3R 12599458 12599481 4 80 2.0 2.0 2.0 1.3 99 chr3R 12599382 intergenic not near genes chr3R 12599432 intergenic not near genes chr3R 12599481 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-101 851 chr3R 12858744 12858771 chr3R 12858825 12858852 9 80 1.5 1.0 1.2 4.1 108 chr3R 12858744 intron CG10126 - chr3R 12858798 intron CG10126 - chr3R 12858852 intron CG10126 - chr3R_9_12855001 chr3R_12855001 RAL-101 852 chr3R 12876960 12876981 chr3R 12877043 12877064 7 83 1.0 2.5 1.8 2.5 104 chr3R 12876960 intergenic not near genes chr3R 12877012 intergenic not near genes chr3R 12877064 intergenic not near genes chr3R_7_12875001 chr3R_12875001 RAL-101 853 chr3R 12920153 12920186 chr3R 12925356 12925389 copia 10 5202 2.5 3.5 3.0 2.5 5236 chr3R 12920153 intron beat-Vb + chr3R 12922771 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_10_12920001 chr3R_12920001 RAL-101 854 chr3R 13059962 13059966 chr3R 13060157 13060161 4 195 2.5 1.0 1.8 1.4 199 chr3R 13059962 intron sim + chr3R 13060062 intron sim + chr3R 13060161 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-101 855 chr3R 13073984 13074003 chr3R 13074063 13074082 5 79 3.0 2.0 2.5 1.4 98 chr3R 13073984 intron sim + chr3R 13074033 intron sim + chr3R 13074082 exon sim + chr3R_5_13070001 chr3R_13070001 RAL-101 856 chr3R 13120771 13120801 chr3R 13120847 13120854 8 71 3.0 3.0 3.0 2.0 83 chr3R 13120771 intron timeout + chr3R 13120812 intron timeout + chr3R 13120854 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-101 857 chr3R 13135828 13135854 chr3R 13138003 13138028 pogo 8 2175 4.5 1.0 2.8 2.1 2200 chr3R 13135828 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138028 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13135001 chr3R_13135001 RAL-101 858 chr3R 13138545 13138562 chr3R 13138638 13138655 5 93 1.5 2.5 2.0 1.7 110 chr3R 13138545 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138600 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138655 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-101 859 chr3R 13143055 13143062 chr3R 13148619 13148637 mdg3 6 5573 0.5 5.0 2.8 1.6 5582 chr3R 13143055 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145846 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148637 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13145001 chr3R_13145001 RAL-101 860 chr3R 13311639 13311642 chr3R 13318890 13318891 Doc 4 7250 13.0 2.5 7.8 0.5 7252 chr3R 13311639 exon CG32473 + chr3R 13315265 intergenic not near genes chr3R 13318891 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-101 861 chr3R 13391643 13391667 chr3R 13391721 13391744 4 78 0.0 3.0 1.5 1.6 101 chr3R 13391643 intron CCHa2 - chr3R 13391694 intron CCHa2 - chr3R 13391744 intron CCHa2 - chr3R_4_13390001 chr3R_13390001 RAL-101 862 chr3R 13394676 13394707 chr3R 13395019 13395051 6 347 3.0 4.0 3.5 1.3 375 chr3R 13394676 intron CCHa2 - chr3R 13394864 intron CCHa2 - chr3R 13395051 intron CCHa2 - chr3R_6_13390001 chr3R_13390001 RAL-101 863 chr3R 13672953 13672966 chr3R 13673031 13673044 4 78 2.0 2.5 2.2 1.2 91 chr3R 13672953 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673044 intron Task6 - chr3R_4_13670001 chr3R_13670001 RAL-101 864 chr3R 13672969 13672978 chr3R 13673023 13673056 4 72 0.5 2.0 1.2 1.8 87 chr3R 13672969 intron Task6 - chr3R 13673012 intron Task6 - chr3R 13673056 intron Task6 - chr3R_4_13670001 chr3R_13670001 RAL-101 865 chr3R 13693028 13693028 chr3R 21907534 21907536 6 8214507 4.5 17.0 10.8 0.5 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_6_17800001 chr3R_17800001 RAL-101 866 chr3R 13782052 13782088 chr3R 13782133 13782167 7 80 0.0 1.0 0.5 4.7 115 chr3R 13782052 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782167 intergenic CG9286 +,Dip-B + chr3R_7_13780001 chr3R_13780001 RAL-101 867 chr3R 14246390 14246415 chr3R 14247886 14247911 jockey 14 1494 9.5 3.0 6.2 1.9 1521 chr3R 14246390 intergenic not near genes chr3R 14247150 intergenic not near genes chr3R 14247911 intergenic not near genes chr3R_14_14245001 chr3R_14245001 RAL-101 868 chr3R 14278428 14278453 chr3R 14278510 14278535 5 82 0.5 1.5 1.0 2.5 107 chr3R 14278428 intron trx - chr3R 14278482 intron trx - chr3R 14278535 intron trx - chr3R_5_14275001 chr3R_14275001 RAL-101 869 chr3R 14327691 14327723 chr3R 14327773 14327805 8 82 1.0 0.5 0.8 4.4 114 chr3R 14327691 3` UTR CG3321 + chr3R 14327748 intergenic CG3321 +,spn-B + chr3R 14327805 intergenic CG3321 +,spn-B + chr3R_8_14325001 chr3R_14325001 RAL-101 870 chr3R 14386226 14386237 chr3R 14386309 14386321 4 84 0.0 1.5 0.8 2.2 95 chr3R 14386226 intergenic not near genes chr3R 14386274 intergenic not near genes chr3R 14386321 intergenic not near genes chr3R_4_14385001 chr3R_14385001 RAL-101 871 chr3R 14459914 14459938 chr3R 14460443 14460462 8 528 1.5 0.5 1.0 4.0 548 chr3R 14459914 intron cv-c - chr3R 14460188 intron cv-c - chr3R 14460462 intron cv-c - chr3R_8_14460001 chr3R_14460001 RAL-101 872 chr3R 14497403 14497432 chr3R 14497483 14497512 6 78 5.0 0.5 2.8 1.6 109 chr3R 14497403 intron CR44177 + chr3R 14497458 intron CR44177 + chr3R 14497512 intron CR44177 + chr3R_6_14495001 chr3R_14495001 RAL-101 873 chr3R 14548575 14548605 chr3R 14548663 14548693 8 86 5.0 2.0 3.5 1.8 118 chr3R 14548575 intron Pde6 - chr3R 14548634 intron Pde6 - chr3R 14548693 intron Pde6 - chr3R_8_14545001 chr3R_14545001 RAL-101 874 chr3R 14560895 14560911 chr3R 14560989 14561005 4 94 2.0 3.0 2.5 1.1 110 chr3R 14560895 intergenic CG14850 + chr3R 14560950 5` UTR CG14850 + chr3R 14561005 exon CG14850 + chr3R_4_14560001 chr3R_14560001 RAL-101 875 chr3R 14704394 14704418 chr3R 14704471 14704495 7 76 3.0 5.0 4.0 1.4 101 chr3R 14704394 intron kibra - chr3R 14704444 intron kibra - chr3R 14704495 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-101 876 chr3R 14776001 14776033 chr3R 14776092 14776123 5 91 0.0 3.0 1.5 2.0 122 chr3R 14776001 intron jvl + chr3R 14776062 intron jvl + chr3R 14776123 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-101 877 chr3R 14968243 14968255 chr3R 14968326 14968334 5 84 3.0 3.0 3.0 1.2 91 chr3R 14968243 intergenic not near genes chr3R 14968288 intergenic not near genes chr3R 14968334 intergenic not near genes chr3R_5_14965001 chr3R_14965001 RAL-101 878 chr3R 14971340 14971375 chr3R 14971442 14971477 12 98 2.5 3.5 3.0 3.0 137 chr3R 14971340 intergenic not near genes chr3R 14971408 intergenic not near genes chr3R 14971477 intergenic not near genes chr3R_12_14970001 chr3R_14970001 RAL-101 879 chr3R 15079468 15079489 chr3R 15079581 15079602 5 113 1.5 0.5 1.0 2.5 134 chr3R 15079468 3` UTR CG6966 - chr3R 15079535 3` UTR CG6966 - chr3R 15079602 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 RAL-101 880 chr3R 15114913 15114948 chr3R 15114991 15115025 4 77 1.5 0.5 1.0 2.0 112 chr3R 15114913 intron CG42788 - chr3R 15114969 intron CG42788 - chr3R 15115025 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-101 881 chr3R 15416249 15416269 chr3R 15416329 15416348 4 80 2.5 2.5 2.5 1.1 99 chr3R 15416249 3` UTR Atx2 + chr3R 15416298 3` UTR Atx2 + chr3R 15416348 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-101 882 chr3R 15568334 15568367 chr3R 15568454 15568484 13 119 6.5 3.5 5.0 2.2 150 chr3R 15568334 intergenic not near genes chr3R 15568409 intergenic not near genes chr3R 15568484 intergenic not near genes chr3R_13_15565001 chr3R_15565001 RAL-101 883 chr3R 15571249 15571496 chr3R 15571355 15571587 9 99 2.0 4.0 3.0 2.2 338 chr3R 15571249 intergenic not near genes chr3R 15571418 intergenic not near genes chr3R 15571587 intergenic not near genes chr3R_9_15570001 chr3R_15570001 RAL-101 884 chr3R 15601165 15601195 chr3R 15608686 15608717 412 7 7521 1.0 3.5 2.2 2.2 7552 chr3R 15601165 intergenic not near genes chr3R 15604941 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-101 885 chr3R 15639340 15639367 chr3R 15639625 15639652 7 285 1.5 2.5 2.0 2.3 312 chr3R 15639340 intergenic not near genes chr3R 15639496 intergenic not near genes chr3R 15639652 intergenic not near genes chr3R_7_15635001 chr3R_15635001 RAL-101 886 chr3R 15773931 15773943 chr3R 15775233 15775246 4 1304 9.0 9.5 9.2 0.4 1315 chr3R 15773931 intergenic CR45206 -,CG4525 + chr3R 15774588 3` UTR,exon CR45206 -,CG4525 + chr3R 15775246 intron,3` UTR CG4525 +,CR45207 - chr3R_4_15770001 chr3R_15770001 RAL-101 887 chr3R 16048852 16048881 chr3R 16048941 16048971 8 90 3.5 3.5 3.5 1.8 119 chr3R 16048852 intron ird5 - chr3R 16048912 intron ird5 - chr3R 16048971 intron ird5 - chr3R_8_16045001 chr3R_16045001 RAL-101 888 chr3R 16073438 16073464 chr3R 16073542 16073568 5 104 1.0 0.5 0.8 2.8 130 chr3R 16073438 intron Mhcl - chr3R 16073503 intron Mhcl - chr3R 16073568 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-101 889 chr3R 16472577 16472597 chr3R 16472653 16472661 12 72 7.0 1.0 4.0 2.4 84 chr3R 16472577 intergenic Gyc-89Da + chr3R 16472619 5` UTR Gyc-89Da + chr3R 16472661 5` UTR Gyc-89Da + chr3R_12_16470001 chr3R_16470001 RAL-101 890 chr3R 16582915 16582919 chr3R 16582989 16582998 6 78 3.5 6.0 4.8 1.0 83 chr3R 16582915 intron Scp2 - chr3R 16582956 intron Scp2 - chr3R 16582998 intron Scp2 - chr3R_6_16580001 chr3R_16580001 RAL-101 891 chr3R 16756321 16756352 chr3R 16762510 16762542 diver 10 6190 2.5 1.0 1.8 3.6 6221 chr3R 16756321 intron bxd - chr3R 16759432 intron bxd - chr3R 16762542 intron bxd - chr3R_10_16755001 chr3R_16755001 RAL-101 892 chr3R 17120497 17120519 chr3R 17120722 17120744 5 225 3.5 0.0 1.8 1.8 247 chr3R 17120497 intron,exon cher -,CG34278 + chr3R 17120620 intron,exon cher -,CG34278 + chr3R 17120744 intron,exon cher -,CG34278 + chr3R_5_17120001 chr3R_17120001 RAL-101 893 chr3R 17223567 17223581 chr3R 17223941 17223955 7 373 2.0 2.5 2.2 2.2 388 chr3R 17223567 intergenic CG31262 - chr3R 17223761 intergenic not near genes chr3R 17223955 intergenic not near genes chr3R_7_17220001 chr3R_17220001 RAL-101 894 chr3R 17348732 17348754 chr3R 17348815 17348843 14 87 3.5 1.5 2.5 4.0 111 chr3R 17348732 intron beat-IIa - chr3R 17348788 intron beat-IIa - chr3R 17348843 intron beat-IIa - chr3R_14_17345001 chr3R_17345001 RAL-101 895 chr3R 17394439 17394466 chr3R 17394603 17394603 6 159 1.5 0.5 1.0 3.0 164 chr3R 17394439 intron CREG - chr3R 17394521 intron CREG - chr3R 17394603 5` UTR CREG - chr3R_6_17390001 chr3R_17390001 RAL-101 896 chr3R 17823225 17823235 chr3R 17823310 17823320 4 85 1.0 2.5 1.8 1.4 95 chr3R 17823225 intron tinc + chr3R 17823272 intron tinc + chr3R 17823320 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-101 897 chr3R 17925858 17925886 chr3R 17927325 17927352 hobo 9 1467 4.0 8.5 6.2 1.2 1494 chr3R 17925858 intron cpo + chr3R 17926605 intron cpo + chr3R 17927352 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-101 898 chr3R 18235227 18235243 chr3R 18235399 18235419 4 175 1.0 2.5 1.8 1.4 192 chr3R 18235227 intergenic not near genes chr3R 18235323 intergenic not near genes chr3R 18235419 intergenic not near genes chr3R_4_18235001 chr3R_18235001 RAL-101 899 chr3R 18379633 18379657 chr3R 18379937 18379963 6 306 2.5 2.5 2.5 1.7 330 chr3R 18379633 intron CG7675 - chr3R 18379798 intron CG7675 - chr3R 18379963 intron CG7675 - chr3R_6_18375001 chr3R_18375001 RAL-101 900 chr3R 18501596 18501625 chr3R 18501677 18501706 5 81 1.0 4.0 2.5 1.4 110 chr3R 18501596 intron fru - chr3R 18501651 intron fru - chr3R 18501706 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-101 901 chr3R 18557800 18557826 chr3R 18557886 18557915 5 88 1.5 2.0 1.8 1.8 115 chr3R 18557800 intergenic not near genes chr3R 18557858 intergenic not near genes chr3R 18557915 intergenic not near genes chr3R_5_18555001 chr3R_18555001 RAL-101 902 chr3R 18606503 18606528 chr3R 18610735 18610760 F-element 5 4232 1.5 0.5 1.0 2.5 4257 chr3R 18606503 intron,intron qin +,CG14304 - chr3R 18608632 intron,intron qin +,CG14304 - chr3R 18610760 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-101 903 chr3R 18618267 18618274 chr3R 18618352 18618359 4 84 1.0 1.5 1.2 1.8 92 chr3R 18618267 intron,intron qin +,CG14304 - chr3R 18618313 intron,intron qin +,CG14304 - chr3R 18618359 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-101 904 chr3R 18766778 18766808 chr3R 18766856 18766881 8 77 2.0 1.5 1.8 2.9 103 chr3R 18766778 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766881 intron CG7720 - chr3R_8_18765001 chr3R_18765001 RAL-101 905 chr3R 18785880 18785899 chr3R 18785950 18785976 5 75 0.0 2.0 1.0 2.5 96 chr3R 18785880 intron CG7720 - chr3R 18785928 intron CG7720 - chr3R 18785976 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-101 906 chr3R 18812077 18812109 chr3R 18812155 18812186 7 77 2.5 5.0 3.8 1.5 109 chr3R 18812077 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_7_18810001 chr3R_18810001 RAL-101 907 chr3R 19060037 19060051 chr3R 19060246 19060276 6 220 1.5 1.0 1.2 2.7 239 chr3R 19060037 intron cdi - chr3R 19060156 intron cdi - chr3R 19060276 intron cdi - chr3R_6_19060001 chr3R_19060001 RAL-101 908 chr3R 19139777 19139789 chr3R 19139872 19139884 6 95 0.5 2.0 1.2 2.7 107 chr3R 19139777 3` UTR Ppcs - chr3R 19139830 3` UTR Ppcs - chr3R 19139884 3` UTR Ppcs - chr3R_6_19135001 chr3R_19135001 RAL-101 909 chr3R 19271422 19271443 chr3R 19271507 19271527 4 78 1.0 3.5 2.2 1.2 105 chr3R 19271422 intergenic not near genes chr3R 19271474 intergenic not near genes chr3R 19271527 intergenic not near genes chr3R_4_19270001 chr3R_19270001 RAL-101 910 chr3R 19593505 19593517 chr3R 19593590 19593602 4 85 2.0 5.0 3.5 0.9 97 chr3R 19593505 intron Dys + chr3R 19593554 intron Dys + chr3R 19593602 intron Dys + chr3R_4_19590001 chr3R_19590001 RAL-101 911 chr3R 19681603 19681630 chr3R 19681694 19681721 6 91 0.0 2.0 1.0 3.0 118 chr3R 19681603 intron Naam + chr3R 19681662 intron Naam + chr3R 19681721 intron Naam + chr3R_6_19680001 chr3R_19680001 RAL-101 912 chr3R 19683253 19683269 chr3R 19683406 19683420 4 152 2.0 0.0 1.0 2.0 167 chr3R 19683253 intron Naam + chr3R 19683336 intron Naam + chr3R 19683420 intron Naam + chr3R_4_19680001 chr3R_19680001 RAL-101 913 chr3R 19716219 19716249 chr3R 19716295 19716326 8 77 0.0 0.0 0.0 8.0 107 chr3R 19716219 intergenic CG34286 - chr3R 19716272 intergenic CG34286 - chr3R 19716326 intergenic CG34286 - chr3R_8_19715001 chr3R_19715001 RAL-101 914 chr3R 19859963 19859994 chr3R 19860044 19860073 6 78 2.5 2.0 2.2 1.9 110 chr3R 19859963 intron Ire1 - chr3R 19860018 intron Ire1 - chr3R 19860073 intron Ire1 - chr3R_6_19860001 chr3R_19860001 RAL-101 915 chr3R 19953950 19953978 chr3R 19954027 19954055 10 75 4.5 4.0 4.2 1.9 105 chr3R 19953950 intron Hs6st - chr3R 19954002 intron Hs6st - chr3R 19954055 intron Hs6st - chr3R_10_19950001 chr3R_19950001 RAL-101 916 chr3R 19994088 19994102 chr3R 19994233 19994253 4 150 2.0 5.0 3.5 0.9 165 chr3R 19994088 intron Hs6st - chr3R 19994170 intron Hs6st - chr3R 19994253 intron Hs6st - chr3R_4_19990001 chr3R_19990001 RAL-101 917 chr3R 20018535 20018572 chr3R 20018614 20018651 10 78 1.0 1.0 1.0 5.0 116 chr3R 20018535 3` UTR CG4433 - chr3R 20018593 3` UTR CG4433 - chr3R 20018651 3` UTR CG4433 - chr3R_10_20015001 chr3R_20015001 RAL-101 918 chr3R 20060635 20060654 chr3R 20060718 20060736 14 82 3.5 2.0 2.8 3.7 101 chr3R 20060635 intergenic not near genes chr3R 20060686 intergenic not near genes chr3R 20060736 intergenic not near genes chr3R_14_20060001 chr3R_20060001 RAL-101 919 chr3R 20066121 20066139 chr3R 20066311 20066328 6 190 0.5 1.5 1.0 3.0 207 chr3R 20066121 intergenic not near genes chr3R 20066224 intergenic not near genes chr3R 20066328 intergenic not near genes chr3R_6_20065001 chr3R_20065001 RAL-101 920 chr3R 20066559 20066578 chr3R 20066795 20066814 4 236 0.5 1.0 0.8 2.2 255 chr3R 20066559 intergenic not near genes chr3R 20066686 intergenic not near genes chr3R 20066814 intergenic not near genes chr3R_4_20065001 chr3R_20065001 RAL-101 921 chr3R 20205565 20205589 chr3R 20205687 20205711 4 122 1.5 0.0 0.8 2.2 146 chr3R 20205565 intron Nlg4 + chr3R 20205638 intron Nlg4 + chr3R 20205711 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-101 922 chr3R 20266133 20266153 chr3R 20266266 20266288 7 134 4.5 1.5 3.0 1.8 155 chr3R 20266133 intron cic + chr3R 20266210 intron cic + chr3R 20266288 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-101 923 chr3R 20472152 20472182 chr3R 20472234 20472264 4 82 2.0 0.0 1.0 2.0 112 chr3R 20472152 intron Gfrl - chr3R 20472208 intron Gfrl - chr3R 20472264 intron Gfrl - chr3R_4_20470001 chr3R_20470001 RAL-101 924 chr3R 20516547 20516552 chr3R 20516903 20516906 4 355 6.0 3.0 4.5 0.7 359 chr3R 20516547 intergenic not near genes chr3R 20516726 intergenic not near genes chr3R 20516906 intergenic not near genes chr3R_4_20515001 chr3R_20515001 RAL-101 925 chr3R 20594491 20594500 chr3R 20594581 20594590 4 90 2.0 0.5 1.2 1.8 99 chr3R 20594491 intron bon + chr3R 20594540 intron bon + chr3R 20594590 intron bon + chr3R_4_20590001 chr3R_20590001 RAL-101 926 chr3R 20722854 20722887 chr3R 20722980 20723014 4 125 4.0 1.0 2.5 1.1 160 chr3R 20722854 intergenic not near genes chr3R 20722934 intergenic not near genes chr3R 20723014 intergenic not near genes chr3R_4_20720001 chr3R_20720001 RAL-101 927 chr3R 20733761 20733792 chr3R 20733853 20733884 8 88 5.5 4.0 4.8 1.4 123 chr3R 20733761 intergenic not near genes chr3R 20733822 intergenic not near genes chr3R 20733884 intergenic not near genes chr3R_8_20730001 chr3R_20730001 RAL-101 928 chr3R 20767504 20767538 chr3R 20767598 20767634 5 95 2.0 2.5 2.2 1.6 130 chr3R 20767504 intron Syp + chr3R 20767569 intron Syp + chr3R 20767634 intron Syp + chr3R_5_20765001 chr3R_20765001 RAL-101 929 chr3R 20771711 20771730 chr3R 20771792 20771797 7 76 0.0 4.0 2.0 2.3 86 chr3R 20771711 intron,intron Syp +,Takl1 - chr3R 20771754 intron,intron Syp +,Takl1 - chr3R 20771797 intron,exon Syp +,Takl1 - chr3R_7_20770001 chr3R_20770001 RAL-101 930 chr3R 20900540 20900573 chr3R 20900619 20900654 9 80 2.0 0.5 1.2 4.1 114 chr3R 20900540 intergenic not near genes chr3R 20900597 intergenic not near genes chr3R 20900654 intergenic not near genes chr3R_9_20900001 chr3R_20900001 RAL-101 931 chr3R 20942812 20942840 chr3R 20942887 20942916 5 75 3.0 3.0 3.0 1.2 104 chr3R 20942812 intron CG31191 - chr3R 20942864 intron CG31191 - chr3R 20942916 intron CG31191 - chr3R_5_20940001 chr3R_20940001 RAL-101 932 chr3R 21041109 21041129 chr3R 21041262 21041281 4 153 2.5 5.5 4.0 0.8 172 chr3R 21041109 exon Dhc93AB - chr3R 21041195 intron Dhc93AB - chr3R 21041281 intron Dhc93AB - chr3R_4_21040001 chr3R_21040001 RAL-101 933 chr3R 21141677 21141699 chr3R 21150153 21150165 Tirant 7 8476 3.0 4.0 3.5 1.6 8488 chr3R 21141677 intron SNF4Agamma + chr3R 21145921 intron SNF4Agamma + chr3R 21150165 intron SNF4Agamma + chr3R_7_21145001 chr3R_21145001 RAL-101 934 chr3R 21154556 21154587 chr3R 21154755 21154802 10 213 1.5 0.0 0.8 5.6 246 chr3R 21154556 intron SNF4Agamma + chr3R 21154679 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_10_21150001 chr3R_21150001 RAL-101 935 chr3R 21251348 21251360 chr3R 21251465 21251478 6 118 4.0 3.0 3.5 1.3 130 chr3R 21251348 intron ETHR + chr3R 21251413 intron ETHR + chr3R 21251478 intron ETHR + chr3R_6_21250001 chr3R_21250001 RAL-101 936 chr3R 21385937 21385951 chr3R 21386014 21386025 6 76 1.0 1.0 1.0 3.0 88 chr3R 21385937 intergenic not near genes chr3R 21385981 intergenic not near genes chr3R 21386025 intergenic not near genes chr3R_6_21385001 chr3R_21385001 RAL-101 937 chr3R 21472012 21472035 chr3R 21472093 21472116 6 81 0.5 4.0 2.2 1.9 104 chr3R 21472012 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-101 938 chr3R 21476000 21476013 chr3R 21476088 21476101 4 88 3.0 2.5 2.8 1.1 101 chr3R 21476000 intergenic not near genes chr3R 21476050 intergenic not near genes chr3R 21476101 intergenic not near genes chr3R_4_21475001 chr3R_21475001 RAL-101 939 chr3R 21518254 21518271 chr3R 21518338 21518355 4 84 0.0 3.5 1.8 1.4 101 chr3R 21518254 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518355 intergenic not near genes chr3R_4_21515001 chr3R_21515001 RAL-101 940 chr3R 21520124 21520137 chr3R 21520217 21520231 4 94 0.0 0.0 0.0 4.0 107 chr3R 21520124 intergenic not near genes chr3R 21520178 intergenic not near genes chr3R 21520231 intergenic not near genes chr3R_4_21520001 chr3R_21520001 RAL-101 941 chr3R 21569839 21569855 chr3R 21569918 21569933 5 80 3.5 1.0 2.2 1.6 94 chr3R 21569839 intergenic InR - chr3R 21569886 intergenic InR - chr3R 21569933 intergenic InR - chr3R_5_21565001 chr3R_21565001 RAL-101 942 chr3R 21761120 21761151 chr3R 21768512 21768540 mdg1 9 7390 3.5 5.0 4.2 1.7 7420 chr3R 21761120 exon CG42335 + chr3R 21764830 intron CG42335 + chr3R 21768540 exon CG42335 + chr3R_9_21760001 chr3R_21760001 RAL-101 943 chr3R 21794456 21794485 chr3R 21794546 21794574 11 88 1.0 0.5 0.8 6.1 118 chr3R 21794456 intron CASK - chr3R 21794515 intron CASK - chr3R 21794574 intron CASK - chr3R_11_21790001 chr3R_21790001 RAL-101 944 chr3R 21832779 21832810 chr3R 21832875 21832877 9 91 1.5 1.5 1.5 3.6 98 chr3R 21832779 exon Gr93a + chr3R 21832828 exon Gr93a + chr3R 21832877 exon Gr93a + chr3R_9_21830001 chr3R_21830001 RAL-101 945 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 13.5 17.0 15.2 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-101 946 chr3R 21907534 21907534 chr3R 28831801 28831802 13 6924268 17.0 19.0 18.0 0.7 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-101 947 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 13.5 16.5 15.0 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-101 948 chr3R 9620954 9620956 chr3R 21907535 21907535 5 12286580 11.0 16.5 13.8 0.3 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-101 949 chr3R 21907535 21907535 chr3R 28831801 28831802 16 6924266 17.0 19.0 18.0 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-101 950 chr3R 21907536 21907536 chr3R 28831801 28831802 11 6924266 16.5 19.0 17.8 0.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-101 951 chr3R 21924027 21924038 chr3R 21924101 21924127 6 84 4.0 1.0 2.5 1.7 100 chr3R 21924027 intergenic not near genes chr3R 21924077 intergenic not near genes chr3R 21924127 intergenic not near genes chr3R_6_21920001 chr3R_21920001 RAL-101 952 chr3R 22064895 22064924 chr3R 22065237 22065266 11 342 3.0 2.0 2.5 3.1 371 chr3R 22064895 intron how + chr3R 22065080 intron how + chr3R 22065266 intron how + chr3R_11_22065001 chr3R_22065001 RAL-101 953 chr3R 22286155 22286164 chr3R 22286232 22286241 4 77 1.0 7.0 4.0 0.8 86 chr3R 22286155 intron SKIP + chr3R 22286198 intron SKIP + chr3R 22286241 intron SKIP + chr3R_4_22285001 chr3R_22285001 RAL-101 954 chr3R 22346186 22346202 chr3R 22346272 22346287 5 86 1.5 1.5 1.5 2.0 101 chr3R 22346186 intergenic not near genes chr3R 22346236 intergenic not near genes chr3R 22346287 intergenic not near genes chr3R_5_22345001 chr3R_22345001 RAL-101 955 chr3R 22428581 22428609 chr3R 22428657 22428685 8 75 2.5 3.5 3.0 2.0 104 chr3R 22428581 intron CG13847 - chr3R 22428633 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_8_22425001 chr3R_22425001 RAL-101 956 chr3R 22437790 22437823 chr3R 22437880 22437912 6 90 1.0 0.5 0.8 3.3 122 chr3R 22437790 intergenic not near genes chr3R 22437851 intergenic not near genes chr3R 22437912 intergenic not near genes chr3R_6_22435001 chr3R_22435001 RAL-101 957 chr3R 22450542 22450578 chr3R 22453181 22453217 NOF 9 2638 1.5 3.5 2.5 2.6 2675 chr3R 22450542 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-101 958 chr3R 22504320 22504352 chr3R 22504440 22504472 9 119 3.0 3.5 3.2 2.1 152 chr3R 22504320 intron Octbeta1R + chr3R 22504396 intron Octbeta1R + chr3R 22504472 intron Octbeta1R + chr3R_9_22500001 chr3R_22500001 RAL-101 959 chr3R 22591883 22591904 chr3R 22591976 22591997 5 93 2.5 4.0 3.2 1.2 114 chr3R 22591883 intron Efa6 + chr3R 22591940 intron Efa6 + chr3R 22591997 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-101 960 chr3R 22797757 22797927 chr3R 22797843 22798023 12 90 0.0 0.5 0.2 10.0 266 chr3R 22797757 intergenic not near genes chr3R 22797890 intergenic not near genes chr3R 22798023 intergenic not near genes chr3R_12_22795001 chr3R_22795001 RAL-101 961 chr3R 22802901 22802934 chr3R 22802981 22803014 11 78 0.0 2.5 1.2 5.0 113 chr3R 22802901 intergenic not near genes chr3R 22802958 intergenic not near genes chr3R 22803014 intergenic not near genes chr3R_11_22800001 chr3R_22800001 RAL-101 962 chr3R 22842390 22842420 chr3R 22842486 22842519 10 98 5.0 0.5 2.8 2.6 129 chr3R 22842390 intergenic not near genes chr3R 22842454 intergenic not near genes chr3R 22842519 intergenic not near genes chr3R_10_22840001 chr3R_22840001 RAL-101 963 chr3R 22860152 22860176 chr3R 22860244 22860268 5 92 2.5 1.0 1.8 1.8 116 chr3R 22860152 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860268 intergenic not near genes chr3R_5_22860001 chr3R_22860001 RAL-101 964 chr3R 22863919 22863927 chr3R 22863997 22864005 4 78 1.5 5.0 3.2 1.0 86 chr3R 22863919 intergenic not near genes chr3R 22863962 intergenic not near genes chr3R 22864005 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-101 965 chr3R 22880943 22880958 chr3R 22881080 22881096 4 138 3.0 0.5 1.8 1.4 153 chr3R 22880943 intergenic not near genes chr3R 22881020 intergenic not near genes chr3R 22881096 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-101 966 chr3R 22913921 22913944 chr3R 22914001 22914023 10 76 1.0 1.5 1.2 4.5 102 chr3R 22913921 intron klg + chr3R 22913972 intron klg + chr3R 22914023 intron klg + chr3R_10_22910001 chr3R_22910001 RAL-101 967 chr3R 22927699 22927711 chr3R 22927782 22927795 5 83 2.0 2.5 2.2 1.6 96 chr3R 22927699 intron klg + chr3R 22927747 intron klg + chr3R 22927795 intron klg + chr3R_5_22925001 chr3R_22925001 RAL-101 968 chr3R 22927715 22927728 chr3R 22927779 22927811 9 81 1.5 2.0 1.8 3.2 96 chr3R 22927715 intron klg + chr3R 22927763 intron klg + chr3R 22927811 intron klg + chr3R_9_22925001 chr3R_22925001 RAL-101 969 chr3R 23073653 23073689 chr3R 23073741 23073778 9 84 2.5 2.0 2.2 2.8 125 chr3R 23073653 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073778 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-101 970 chr3R 23101382 23101411 chr3R 23101473 23101477 9 85 0.5 1.0 0.8 5.0 95 chr3R 23101382 intron CG13830 - chr3R 23101430 intron CG13830 - chr3R 23101477 intron CG13830 - chr3R_9_23100001 chr3R_23100001 RAL-101 971 chr3R 23110891 23110911 chr3R 23111058 23111078 6 167 2.0 2.5 2.2 1.9 187 chr3R 23110891 intron CG13830 - chr3R 23110984 intron CG13830 - chr3R 23111078 intron CG13830 - chr3R_6_23110001 chr3R_23110001 RAL-101 972 chr3R 23197966 23197974 chr3R 23198045 23198053 4 79 2.0 0.5 1.2 1.8 87 chr3R 23197966 exon cnc - chr3R 23198010 intron cnc - chr3R 23198053 intron cnc - chr3R_4_23195001 chr3R_23195001 RAL-101 973 chr3R 23291254 23291283 chr3R 23291340 23291351 8 84 2.5 5.0 3.8 1.7 97 chr3R 23291254 3` UTR pnt - chr3R 23291302 3` UTR pnt - chr3R 23291351 3` UTR pnt - chr3R_8_23290001 chr3R_23290001 RAL-101 974 chr3R 23341937 23341964 chr3R 23342055 23342071 4 115 3.0 1.0 2.0 1.3 134 chr3R 23341937 intron pnt - chr3R 23342004 intron pnt - chr3R 23342071 intron pnt - chr3R_4_23340001 chr3R_23340001 RAL-101 975 chr3R 23421978 23422011 chr3R 23422062 23422096 10 85 1.5 2.0 1.8 3.6 118 chr3R 23421978 intron CG4374 - chr3R 23422037 intron CG4374 - chr3R 23422096 intron CG4374 - chr3R_10_23420001 chr3R_23420001 RAL-101 976 chr3R 23453681 23453711 chr3R 23453760 23453790 8 79 2.0 1.5 1.8 2.9 109 chr3R 23453681 intron CG4374 - chr3R 23453736 intron CG4374 - chr3R 23453790 intron CG4374 - chr3R_8_23450001 chr3R_23450001 RAL-101 977 chr3R 23528261 23528282 chr3R 23528350 23528371 7 89 2.0 1.5 1.8 2.5 110 chr3R 23528261 intron CG10175 - chr3R 23528316 intron CG10175 - chr3R 23528371 intron CG10175 - chr3R_7_23525001 chr3R_23525001 RAL-101 978 chr3R 23548068 23548100 chr3R 23548372 23548399 8 302 3.5 2.0 2.8 2.1 331 chr3R 23548068 intergenic not near genes chr3R 23548234 intergenic not near genes chr3R 23548399 intergenic not near genes chr3R_8_23545001 chr3R_23545001 RAL-101 979 chr3R 23558404 23558427 chr3R 23560185 23560208 Bari1 4 1781 2.5 1.5 2.0 1.3 1804 chr3R 23558404 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-101 980 chr3R 23684698 23684729 chr3R 23685181 23685215 roo 10 477 2.0 5.0 3.5 2.2 517 chr3R 23684698 exon CG18754 + chr3R 23684956 intron CG18754 + chr3R 23685215 exon CG18754 + chr3R_10_23680001 chr3R_23680001 RAL-101 981 chr3R 23884301 23884327 chr3R 23884385 23884411 8 83 0.0 2.0 1.0 4.0 110 chr3R 23884301 intron Pli - chr3R 23884356 intron Pli - chr3R 23884411 intron Pli - chr3R_8_23880001 chr3R_23880001 RAL-101 982 chr3R 23946445 23946455 chr3R 23946588 23946599 4 144 3.5 6.0 4.8 0.7 154 chr3R 23946445 intron CG12268 - chr3R 23946522 intron CG12268 - chr3R 23946599 intron CG12268 - chr3R_4_23945001 chr3R_23945001 RAL-101 983 chr3R 23946463 23946476 chr3R 23946587 23946620 4 138 1.5 6.0 3.8 0.8 157 chr3R 23946463 intron CG12268 - chr3R 23946542 intron CG12268 - chr3R 23946620 exon CG12268 - chr3R_4_23945001 chr3R_23945001 RAL-101 984 chr3R 24025575 24025596 chr3R 24025653 24025667 9 76 2.5 3.5 3.0 2.2 92 chr3R 24025575 intron KrT95D - chr3R 24025621 intron KrT95D - chr3R 24025667 intron KrT95D - chr3R_9_24025001 chr3R_24025001 RAL-101 985 chr3R 24072084 24072102 chr3R 24072522 24072540 jockey 9 438 6.5 0.0 3.2 2.1 456 chr3R 24072084 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072540 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-101 986 chr3R 24076926 24076946 chr3R 24078381 24078413 hobo 7 1465 6.0 3.0 4.5 1.3 1487 chr3R 24076926 intron 4EHP - chr3R 24077670 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-101 987 chr3R 24207222 24207246 chr3R 24212298 24212322 flea 8 5076 2.0 7.0 4.5 1.5 5100 chr3R 24207222 intron twin - chr3R 24209772 intron twin - chr3R 24212322 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-101 988 chr3R 24212387 24212404 chr3R 24212471 24212489 4 84 1.0 3.5 2.2 1.2 102 chr3R 24212387 intron twin - chr3R 24212438 intron twin - chr3R 24212489 intron twin - chr3R_4_24210001 chr3R_24210001 RAL-101 989 chr3R 24401191 24401228 chr3R 24401279 24401286 7 79 3.0 1.5 2.2 2.2 95 chr3R 24401191 3` UTR nAChRalpha1 - chr3R 24401238 3` UTR nAChRalpha1 - chr3R 24401286 3` UTR nAChRalpha1 - chr3R_7_24400001 chr3R_24400001 RAL-101 990 chr3R 24426286 24426311 chr3R 24426542 24426567 5 257 2.5 3.0 2.8 1.3 281 chr3R 24426286 intron nAChRalpha1 - chr3R 24426426 intron nAChRalpha1 - chr3R 24426567 intron nAChRalpha1 - chr3R_5_24425001 chr3R_24425001 RAL-101 991 chr3R 24493284 24493305 chr3R 24493513 24493533 BS 5 228 0.5 3.5 2.0 1.7 249 chr3R 24493284 intergenic not near genes chr3R 24493408 intergenic not near genes chr3R 24493533 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-101 992 chr3R 24730096 24730122 chr3R 24732473 24732480 Doc 5 2373 1.5 0.0 0.8 2.8 2384 chr3R 24730096 intron tok + chr3R 24731288 intron tok + chr3R 24732480 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-101 993 chr3R 24789982 24790002 chr3R 24790127 24790144 8 144 1.5 2.0 1.8 2.9 162 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790063 intron,5` UTR Ets96B +,CG13634 - chr3R 24790144 intron Ets96B + chr3R_8_24790001 chr3R_24790001 RAL-101 994 chr3R 24927129 24927155 chr3R 24931920 24931946 Doc 6 4791 1.0 1.5 1.2 2.7 4817 chr3R 24927129 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-101 995 chr3R 25053147 25053162 chr3R 25053232 25053236 6 83 0.0 5.0 2.5 1.7 89 chr3R 25053147 intergenic CG11791 +,CG31109 - chr3R 25053192 intergenic CG11791 +,CG31109 - chr3R 25053236 intergenic CG31109 -,CG11791 + chr3R_6_25050001 chr3R_25050001 RAL-101 996 chr3R 25159506 25159540 chr3R 25159594 25159628 8 88 1.5 4.0 2.8 2.1 122 chr3R 25159506 intergenic not near genes chr3R 25159567 intergenic not near genes chr3R 25159628 intergenic not near genes chr3R_8_25155001 chr3R_25155001 RAL-101 997 chr3R 25512405 25512425 chr3R 25512474 25512502 6 77 0.0 3.0 1.5 2.4 97 chr3R 25512405 intergenic not near genes chr3R 25512454 intergenic not near genes chr3R 25512502 intergenic not near genes chr3R_6_25510001 chr3R_25510001 RAL-101 998 chr3R 25612848 25612863 chr3R 25612951 25612970 10 106 0.0 7.0 3.5 2.2 122 chr3R 25612848 intron Npl4 - chr3R 25612909 intron Npl4 - chr3R 25612970 intron Npl4 - chr3R_10_25610001 chr3R_25610001 RAL-101 999 chr3R 25652318 25652352 chr3R 25652395 25652425 9 76 2.0 2.5 2.2 2.8 107 chr3R 25652318 intergenic not near genes chr3R 25652372 intergenic not near genes chr3R 25652425 intergenic not near genes chr3R_9_25650001 chr3R_25650001 RAL-101 1000 chr3R 25689132 25689158 chr3R 25689235 25689266 8 107 3.5 3.0 3.2 1.9 134 chr3R 25689132 intergenic not near genes chr3R 25689199 intergenic not near genes chr3R 25689266 intergenic not near genes chr3R_8_25685001 chr3R_25685001 RAL-101 1001 chr3R 25755193 25755215 chr3R 25756053 25756074 5 860 1.5 2.0 1.8 1.8 881 chr3R 25755193 intron LpR1 - chr3R 25755634 intron LpR1 - chr3R 25756074 intron LpR1 - chr3R_5_25755001 chr3R_25755001 RAL-101 1002 chr3R 25832695 25832717 chr3R 25841877 25841899 roo 6 9182 4.5 4.5 4.5 1.1 9204 chr3R 25832695 exon alpha4GT2 + chr3R 25837297 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-101 1003 chr3R 25927505 25927523 chr3R 25927587 25927605 4 81 2.5 0.0 1.2 1.8 100 chr3R 25927505 intron CCAP-R - chr3R 25927555 intron CCAP-R - chr3R 25927605 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-101 1004 chr3R 26093852 26093872 chr3R 26093930 26093950 6 78 0.0 3.5 1.8 2.1 98 chr3R 26093852 intron dys - chr3R 26093901 intron dys - chr3R 26093950 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-101 1005 chr3R 26121953 26121968 chr3R 26122050 26122065 6 97 0.0 4.5 2.2 1.9 112 chr3R 26121953 intron CG31324 + chr3R 26122009 intron CG31324 + chr3R 26122065 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-101 1006 chr3R 26123185 26123207 chr3R 26123264 26123286 4 79 1.5 2.0 1.8 1.4 101 chr3R 26123185 intron CG31324 + chr3R 26123236 intron CG31324 + chr3R 26123286 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-101 1007 chr3R 26126283 26126290 chr3R 26126388 26126395 4 105 5.0 2.0 3.5 0.9 112 chr3R 26126283 intron CG31324 + chr3R 26126339 intron CG31324 + chr3R 26126395 intron CG31324 + chr3R_4_26125001 chr3R_26125001 RAL-101 1008 chr3R 26159653 26159675 chr3R 26159771 26159793 5 118 2.5 2.0 2.2 1.6 140 chr3R 26159653 intergenic not near genes chr3R 26159723 intergenic not near genes chr3R 26159793 intergenic not near genes chr3R_5_26155001 chr3R_26155001 RAL-101 1009 chr3R 26241414 26241441 chr3R 26241500 26241527 5 82 4.0 4.0 4.0 1.0 113 chr3R 26241414 intron CR42745 + chr3R 26241470 intron CR42745 + chr3R 26241527 intron CR42745 + chr3R_5_26240001 chr3R_26240001 RAL-101 1010 chr3R 26265813 26265848 chr3R 26265901 26265936 6 88 2.5 3.0 2.8 1.6 123 chr3R 26265813 intron CG6154 + chr3R 26265874 intron CG6154 + chr3R 26265936 intron CG6154 + chr3R_6_26265001 chr3R_26265001 RAL-101 1011 chr3R 26294719 26294739 chr3R 26294797 26294817 6 78 0.5 1.5 1.0 3.0 98 chr3R 26294719 intergenic not near genes chr3R 26294768 intergenic not near genes chr3R 26294817 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-101 1012 chr3R 26376336 26376358 chr3R 26385485 26385517 roo 6 9156 2.0 0.0 1.0 3.0 9181 chr3R 26376336 intergenic not near genes chr3R 26380926 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_6_26380001 chr3R_26380001 RAL-101 1013 chr3R 26492686 26492693 chr3R 26492812 26492814 4 125 2.5 2.5 2.5 1.1 128 chr3R 26492686 intron plum - chr3R 26492750 intron plum - chr3R 26492814 intron plum - chr3R_4_26490001 chr3R_26490001 RAL-101 1014 chr3R 26542050 26542079 chr3R 26542139 26542169 10 89 3.0 4.0 3.5 2.2 119 chr3R 26542050 intron scrib + chr3R 26542110 intron scrib + chr3R 26542169 intron scrib + chr3R_10_26540001 chr3R_26540001 RAL-101 1015 chr3R 26558329 26558361 chr3R 26565642 26565653 Stalker4 5 7308 3.0 2.5 2.8 1.3 7324 chr3R 26558329 intron scrib + chr3R 26561991 intron scrib + chr3R 26565653 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-101 1016 chr3R 26571594 26571619 chr3R 26571672 26571697 9 77 1.5 1.5 1.5 3.6 103 chr3R 26571594 intron scrib + chr3R 26571646 intron scrib + chr3R 26571697 intron scrib + chr3R_9_26570001 chr3R_26570001 RAL-101 1017 chr3R 26641652 26641664 chr3R 26641734 26641751 5 85 1.0 4.5 2.8 1.3 99 chr3R 26641652 intergenic not near genes chr3R 26641702 intergenic not near genes chr3R 26641751 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-101 1018 chr3R 26642729 26642758 chr3R 26643122 26643152 jockey 5 394 3.5 2.0 2.8 1.3 423 chr3R 26642729 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643152 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-101 1019 chr3R 26651533 26651542 chr3R 26651614 26651627 5 83 2.5 3.0 2.8 1.3 94 chr3R 26651533 intron beat-VII - chr3R 26651580 intron beat-VII - chr3R 26651627 intron beat-VII - chr3R_5_26650001 chr3R_26650001 RAL-101 1020 chr3R 26703267 26703287 chr3R 26703364 26703384 6 97 6.0 0.0 3.0 1.5 117 chr3R 26703267 intron amon - chr3R 26703326 intron amon - chr3R 26703384 intron amon - chr3R_6_26700001 chr3R_26700001 RAL-101 1021 chr3R 26706122 26706152 chr3R 26706200 26706230 15 77 2.5 3.0 2.8 3.9 108 chr3R 26706122 intron amon - chr3R 26706176 intron amon - chr3R 26706230 intron amon - chr3R_15_26705001 chr3R_26705001 RAL-101 1022 chr3R 26710835 26710852 chr3R 26710912 26710936 4 82 1.5 1.0 1.2 1.8 101 chr3R 26710835 intron amon - chr3R 26710886 intron amon - chr3R 26710936 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-101 1023 chr3R 26770241 26770265 chr3R 26770318 26770342 4 77 2.0 1.0 1.5 1.6 101 chr3R 26770241 intergenic CR45563 + chr3R 26770292 intergenic CR45563 + chr3R 26770342 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-101 1024 chr3R 26810551 26810581 chr3R 26811036 26811066 roo 4 485 2.5 3.0 2.8 1.1 515 chr3R 26810551 intron Tl + chr3R 26810808 intron Tl + chr3R 26811066 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-101 1025 chr3R 26845579 26845605 chr3R 26845659 26845683 6 80 2.0 3.5 2.8 1.6 104 chr3R 26845579 intron Lerp - chr3R 26845631 intron Lerp - chr3R 26845683 intron Lerp - chr3R_6_26845001 chr3R_26845001 RAL-101 1026 chr3R 27019515 27019540 chr3R 27019610 27019635 8 94 2.5 3.5 3.0 2.0 120 chr3R 27019515 intron,exon RYa-R +,CG17191 - chr3R 27019575 intron,exon RYa-R +,CG17191 - chr3R 27019635 intron,intron RYa-R +,CG17191 - chr3R_8_27015001 chr3R_27015001 RAL-101 1027 chr3R 27140522 27140538 chr3R 27148132 27148148 412 6 7608 5.5 5.5 5.5 0.9 7626 chr3R 27140522 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148148 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-101 1028 chr3R 27200155 27200192 chr3R 27200242 27200279 12 86 2.5 3.5 3.0 3.0 124 chr3R 27200155 intergenic not near genes chr3R 27200217 intergenic not near genes chr3R 27200279 intergenic not near genes chr3R_12_27200001 chr3R_27200001 RAL-101 1029 chr3R 27326273 27326291 chr3R 27326362 27326378 6 88 6.0 2.5 4.2 1.2 105 chr3R 27326273 intergenic not near genes chr3R 27326326 intergenic not near genes chr3R 27326378 intergenic not near genes chr3R_6_27325001 chr3R_27325001 RAL-101 1030 chr3R 27452592 27452610 chr3R 27452772 27452789 4 180 0.0 1.0 0.5 2.7 197 chr3R 27452592 intergenic not near genes chr3R 27452690 intergenic not near genes chr3R 27452789 intergenic not near genes chr3R_4_27450001 chr3R_27450001 RAL-101 1031 chr3R 27470042 27470075 chr3R 27470704 27470717 11 659 3.0 1.5 2.2 3.4 675 chr3R 27470042 intergenic not near genes chr3R 27470380 intergenic not near genes chr3R 27470717 intergenic not near genes chr3R_11_27470001 chr3R_27470001 RAL-101 1032 chr3R 27541948 27541958 chr3R 27542028 27542038 7 80 7.5 5.0 6.2 1.0 90 chr3R 27541948 intergenic not near genes chr3R 27541993 intergenic not near genes chr3R 27542038 intergenic Gr98b + chr3R_7_27540001 chr3R_27540001 RAL-101 1033 chr3R 27619702 27619730 chr3R 27619817 27619844 11 114 0.0 2.0 1.0 5.5 142 chr3R 27619702 intron Tusp + chr3R 27619773 intron Tusp + chr3R 27619844 intron Tusp + chr3R_11_27615001 chr3R_27615001 RAL-101 1034 chr3R 27679937 27679972 chr3R 27680059 27680094 12 120 3.5 3.5 3.5 2.7 157 chr3R 27679937 exon CG12883 + chr3R 27680016 3` UTR CG12883 + chr3R 27680094 3` UTR CG12883 + chr3R_12_27680001 chr3R_27680001 RAL-101 1035 chr3R 27705358 27705386 chr3R 27705438 27705466 7 80 2.0 3.5 2.8 1.8 108 chr3R 27705358 exon CG12428 - chr3R 27705412 intron CG12428 - chr3R 27705466 exon CG12428 - chr3R_7_27705001 chr3R_27705001 RAL-101 1036 chr3R 27725567 27725593 chr3R 27731009 27731035 I-element 4 5441 4.0 2.5 3.2 1.0 5468 chr3R 27725567 intergenic not near genes chr3R 27728301 intergenic not near genes chr3R 27731035 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-101 1037 chr3R 27731205 27731225 chr3R 27731286 27731287 4 76 6.5 12.0 9.2 0.4 82 chr3R 27731205 intergenic not near genes chr3R 27731246 intergenic not near genes chr3R 27731287 intergenic not near genes chr3R_4_27730001 chr3R_27730001 RAL-101 1038 chr3R 27779284 27779289 chr3R 27779361 27779365 4 76 4.5 5.0 4.8 0.7 81 chr3R 27779284 exon CG34353 - chr3R 27779324 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-101 1039 chr3R 27799939 27799963 chr3R 27800021 27800045 4 82 2.0 0.5 1.2 1.8 106 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800045 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-101 1040 chr3R 27856768 27856790 chr3R 27858251 27858272 hopper2 7 1483 2.0 3.5 2.8 1.8 1504 chr3R 27856768 intron CG34353 - chr3R 27857520 intron CG34353 - chr3R 27858272 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-101 1041 chr3R 27862956 27862972 chr3R 27868261 27868277 Transpac 5 5305 0.5 2.0 1.2 2.3 5321 chr3R 27862956 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868277 intron CG34353 - chr3R_5_27865001 chr3R_27865001 RAL-101 1042 chr3R 27875698 27875722 chr3R 27882753 27882776 297 4 7055 3.5 3.0 3.2 1.0 7078 chr3R 27875698 intron CG34353 - chr3R 27879237 intron CG34353 - chr3R 27882776 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-101 1043 chr3R 28012949 28012972 chr3R 28013164 28013193 6 220 2.5 2.0 2.2 1.9 244 chr3R 28012949 intergenic not near genes chr3R 28013071 intergenic not near genes chr3R 28013193 intergenic not near genes chr3R_6_28010001 chr3R_28010001 RAL-101 1044 chr3R 28061408 28061435 chr3R 28061488 28061516 10 74 3.0 1.0 2.0 3.3 108 chr3R 28061408 intron CG34362 + chr3R 28061462 intron CG34362 + chr3R 28061516 intron CG34362 + chr3R_10_28060001 chr3R_28060001 RAL-101 1045 chr3R 28068497 28068517 chr3R 28073939 28073958 I-element 5 5442 1.5 3.5 2.5 1.4 5461 chr3R 28068497 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073958 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-101 1046 chr3R 28103322 28103359 chr3R 28103415 28103443 8 90 4.5 1.0 2.8 2.1 121 chr3R 28103322 intergenic not near genes chr3R 28103382 intergenic not near genes chr3R 28103443 intergenic not near genes chr3R_8_28100001 chr3R_28100001 RAL-101 1047 chr3R 28173673 28173696 chr3R 28181103 28181125 mdg1 5 7429 2.5 3.5 3.0 1.2 7452 chr3R 28173673 intron CG34354 + chr3R 28177399 intron CG34354 + chr3R 28181125 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-101 1048 chr3R 28253348 28253371 chr3R 28255857 28255881 jockey 7 2510 3.5 3.5 3.5 1.6 2533 chr3R 28253348 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-101 1049 chr3R 28302111 28302135 chr3R 28302549 28302574 jockey 5 439 1.5 2.0 1.8 1.8 463 chr3R 28302111 intergenic not near genes chr3R 28302342 intergenic not near genes chr3R 28302574 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-101 1050 chr3R 28352512 28352545 chr3R 28352852 28352884 15 340 3.5 2.0 2.8 3.9 372 chr3R 28352512 exon Or98b + chr3R 28352698 exon Or98b + chr3R 28352884 exon Or98b + chr3R_15_28350001 chr3R_28350001 RAL-101 1051 chr3R 28406586 28406606 chr3R 28406863 28406883 5 276 1.5 2.0 1.8 1.8 297 chr3R 28406586 intergenic not near genes chr3R 28406734 intergenic not near genes chr3R 28406883 intergenic not near genes chr3R_5_28405001 chr3R_28405001 RAL-101 1052 chr3R 28429450 28429486 chr3R 28429535 28429570 7 77 2.0 4.0 3.0 1.8 120 chr3R 28429450 intron beat-VI + chr3R 28429510 intron beat-VI + chr3R 28429570 intron beat-VI + chr3R_7_28425001 chr3R_28425001 RAL-101 1053 chr3R 28430928 28430955 chr3R 28431034 28431061 4 104 2.5 3.0 2.8 1.1 133 chr3R 28430928 intron beat-VI + chr3R 28430994 intron beat-VI + chr3R 28431061 intron beat-VI + chr3R_4_28430001 chr3R_28430001 RAL-101 1054 chr3R 28478208 28478234 chr3R 28478314 28478339 5 105 3.0 6.0 4.5 0.9 131 chr3R 28478208 intergenic not near genes chr3R 28478274 intergenic not near genes chr3R 28478339 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-101 1055 chr3R 28478991 28479162 chr3R 28479087 28479245 11 94 1.5 3.0 2.2 3.4 254 chr3R 28478991 intergenic not near genes chr3R 28479118 intergenic not near genes chr3R 28479245 intergenic not near genes chr3R_11_28475001 chr3R_28475001 RAL-101 1056 chr3R 28484354 28484375 chr3R 28486271 28486292 7 1918 10.5 17.5 14.0 0.5 1938 chr3R 28484354 intergenic CG1894 + chr3R 28485323 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_7_28485001 chr3R_28485001 RAL-101 1057 chr3R 28742496 28742514 chr3R 28742572 28742590 6 76 0.5 3.0 1.8 2.1 94 chr3R 28742496 intron AstA-R2 - chr3R 28742543 intron AstA-R2 - chr3R 28742590 intron AstA-R2 - chr3R_6_28740001 chr3R_28740001 RAL-101 1058 chr3R 28763900 28763913 chr3R 28771343 28771355 Stalker4 4 7443 0.0 0.0 0.0 4.0 7455 chr3R 28763900 intergenic not near genes chr3R 28767628 intergenic not near genes chr3R 28771355 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-101 1059 chr3R 28792876 28792904 chr3R 28797963 28797989 jockey 7 5087 2.0 3.5 2.8 1.8 5113 chr3R 28792876 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797989 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-101 1060 chr3R 28823106 28823142 chr3R 28823183 28823219 14 75 2.0 1.0 1.5 5.6 113 chr3R 28823106 exon CG1647 + chr3R 28823162 exon CG1647 + chr3R 28823219 exon CG1647 + chr3R_14_28820001 chr3R_28820001 RAL-101 1061 chr3R 21907534 21907536 chr3R 28831799 28831802 78 6924266 16.5 19.0 17.8 4.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_78_25365001 chr3R_25365001 RAL-101 1062 chr3R 28986288 28986295 chr3R 28986365 28986372 4 76 8.5 7.5 8.0 0.4 84 chr3R 28986288 intergenic not near genes chr3R 28986330 intergenic not near genes chr3R 28986372 intergenic not near genes chr3R_4_28985001 chr3R_28985001 RAL-101 1063 chr3R 29017425 29017449 chr3R 29017502 29017531 6 80 2.0 5.5 3.8 1.2 106 chr3R 29017425 intron wat - chr3R 29017478 intron wat - chr3R 29017531 intron wat - chr3R_6_29015001 chr3R_29015001 RAL-101 1064 chr3R 29032743 29032777 chr3R 29032820 29032854 8 74 2.0 1.0 1.5 3.2 111 chr3R 29032743 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032798 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032854 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_8_29030001 chr3R_29030001 RAL-101 1065 chr3R 29079400 29079409 chr3R 29080772 29080781 NOF 4 1372 0.0 1.5 0.8 2.2 1381 chr3R 29079400 intron CG11873 + chr3R 29080090 intron CG11873 + chr3R 29080781 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-101 1066 chr3R 29213063 29213093 chr3R 29213141 29213176 10 82 2.0 3.0 2.5 2.9 113 chr3R 29213063 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213176 intergenic not near genes chr3R_10_29210001 chr3R_29210001 RAL-101 1067 chr3R 29236812 29236976 chr3R 29247122 29247264 4 10304 23.5 15.5 19.5 0.2 10452 chr3R 29236812 exon CG11951 - chr3R 29242038 exon CG31445 - chr3R 29247264 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-101 1068 chr3R 29237257 29237272 chr3R 29239277 29239293 7 2021 14.0 8.0 11.0 0.6 2036 chr3R 29237257 exon CG11951 - chr3R 29238275 intron CG11951 - chr3R 29239293 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-101 1069 chr3R 29239228 29239245 chr3R 29245519 29245536 7 6290 5.5 12.0 8.8 0.7 6308 chr3R 29239228 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245536 exon SP1029 - chr3R_7_29240001 chr3R_29240001 RAL-101 1070 chr3R 29406635 29406652 chr3R 29407900 29407925 jockey 8 1279 0.5 2.0 1.2 3.6 1290 chr3R 29406635 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407925 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-101 1071 chr3R 29415615 29415635 chr3R 29415779 29415800 6 164 21.5 16.0 18.8 0.3 185 chr3R 29415615 intron Ptp99A + chr3R 29415708 intron Ptp99A + chr3R 29415800 intron Ptp99A + chr3R_6_29415001 chr3R_29415001 RAL-101 1072 chr3R 29518545 29518584 chr3R 29518621 29518655 14 69 1.5 2.0 1.8 5.0 110 chr3R 29518545 intergenic not near genes chr3R 29518600 intergenic not near genes chr3R 29518655 intergenic not near genes chr3R_14_29515001 chr3R_29515001 RAL-101 1073 chr3R 29526252 29526259 chr3R 29526339 29526346 5 87 1.0 5.5 3.2 1.2 94 chr3R 29526252 intergenic not near genes chr3R 29526299 intergenic not near genes chr3R 29526346 intergenic not near genes chr3R_5_29525001 chr3R_29525001 RAL-101 1074 chr3R 29539434 29539452 chr3R 29539510 29539528 5 76 2.5 0.0 1.2 2.3 94 chr3R 29539434 intergenic not near genes chr3R 29539481 intergenic not near genes chr3R 29539528 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-101 1075 chr3R 29552089 29552117 chr3R 29552198 29552231 8 111 2.5 4.5 3.5 1.8 142 chr3R 29552089 intergenic not near genes chr3R 29552160 intergenic not near genes chr3R 29552231 intergenic not near genes chr3R_8_29550001 chr3R_29550001 RAL-101 1076 chr3R 29606936 29606951 chr3R 29607014 29607029 5 78 2.0 3.0 2.5 1.4 93 chr3R 29606936 intron alph + chr3R 29606982 intron alph + chr3R 29607029 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-101 1077 chr3R 29738284 29738291 chr3R 29739734 29739758 hobo 6 1463 2.5 3.5 3.0 1.5 1474 chr3R 29738284 5` UTR CG1969 + chr3R 29739021 intron CG1969 + chr3R 29739758 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-101 1078 chr3R 29758943 29758969 chr3R 29759019 29759047 13 77 1.5 5.5 3.5 2.9 104 chr3R 29758943 3` UTR CR44953 - chr3R 29758995 3` UTR CR44953 - chr3R 29759047 intergenic CR44953 - chr3R_13_29755001 chr3R_29755001 RAL-101 1079 chr3R 29773874 29773905 chr3R 29773965 29773996 6 90 2.0 0.0 1.0 3.0 122 chr3R 29773874 intron kay + chr3R 29773935 intron kay + chr3R 29773996 intron kay + chr3R_6_29770001 chr3R_29770001 RAL-101 1080 chr3R 29854832 29854858 chr3R 29854912 29854938 6 80 1.5 3.5 2.5 1.7 106 chr3R 29854832 3` UTR dgt1 - chr3R 29854885 exon dgt1 - chr3R 29854938 exon dgt1 - chr3R_6_29850001 chr3R_29850001 RAL-101 1081 chr3R 29882029 29882051 chr3R 29891186 29891208 roo 4 9157 2.5 3.0 2.8 1.1 9179 chr3R 29882029 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891208 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-101 1082 chr3R 29950585 29950599 chr3R 29950662 29950674 4 75 1.5 2.0 1.8 1.4 89 chr3R 29950585 intergenic TkR99D - chr3R 29950630 intergenic TkR99D - chr3R 29950674 intergenic TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-101 1083 chr3R 29963485 29963509 chr3R 29963586 29963611 9 101 1.5 3.5 2.5 2.6 126 chr3R 29963485 intron TkR99D - chr3R 29963548 intron TkR99D - chr3R 29963611 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-101 1084 chr3R 30084856 30084864 chr3R 30086323 30086331 hobo 5 1466 2.0 1.0 1.5 2.0 1475 chr3R 30084856 intron sima + chr3R 30085594 intron sima + chr3R 30086331 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-101 1085 chr3R 30084865 30084881 chr3R 30086322 30086347 hobo 8 1465 1.0 1.0 1.0 4.0 1482 chr3R 30084865 intron sima + chr3R 30085606 intron sima + chr3R 30086347 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-101 1086 chr3R 30088621 30088634 chr3R 30088707 30088720 6 86 0.0 1.0 0.5 4.0 99 chr3R 30088621 intron sima + chr3R 30088670 intron sima + chr3R 30088720 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-101 1087 chr3R 30124961 30124971 chr3R 30125038 30125047 5 76 1.5 1.5 1.5 2.0 86 chr3R 30124961 intergenic CG45073 - chr3R 30125004 intergenic CG45073 - chr3R 30125047 intergenic CG45073 - chr3R_5_30125001 chr3R_30125001 RAL-101 1088 chr3R 30177765 30177773 chr3R 30177868 30177890 4 114 2.0 2.0 2.0 1.3 125 chr3R 30177765 intergenic CG1983 -,CG15530 + chr3R 30177828 intergenic CG15530 +,CG1983 - chr3R 30177890 5` UTR CG15530 + chr3R_4_30175001 chr3R_30175001 RAL-101 1089 chr3R 30260368 30260395 chr3R 30260444 30260471 4 76 1.0 2.5 1.8 1.4 103 chr3R 30260368 intergenic not near genes chr3R 30260420 intergenic not near genes chr3R 30260471 intergenic not near genes chr3R_4_30260001 chr3R_30260001 RAL-101 1090 chr3R 30428580 30428611 chr3R 30428717 30428748 7 136 2.0 3.0 2.5 2.0 168 chr3R 30428580 intergenic CG15533 +,CG2218 - chr3R 30428664 intergenic CG15533 +,CG2218 - chr3R 30428748 intergenic CG15533 +,CG2218 - chr3R_7_30425001 chr3R_30425001 RAL-101 1091 chr3R 30480475 30480513 chr3R 30482940 30482981 jockey 15 2465 3.5 2.0 2.8 3.9 2506 chr3R 30480475 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_15_30480001 chr3R_30480001 RAL-101 1092 chr3R 30549011 30549039 chr3R 30549103 30549131 9 92 0.0 0.5 0.2 7.5 120 chr3R 30549011 intron tmod + chr3R 30549071 intron tmod + chr3R 30549131 intron tmod + chr3R_9_30545001 chr3R_30545001 RAL-101 1093 chr3R 30571701 30571730 chr3R 30571781 30571809 6 80 0.5 1.0 0.8 3.3 108 chr3R 30571701 intron tmod + chr3R 30571755 intron tmod + chr3R 30571809 exon tmod + chr3R_6_30570001 chr3R_30570001 RAL-101 1094 chr3R 30627606 30627623 chr3R 30627685 30627696 5 77 6.5 3.0 4.8 0.9 90 chr3R 30627606 exon CG2267 - chr3R 30627651 exon CG2267 - chr3R 30627696 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-101 1095 chr3R 30627626 30627634 chr3R 30627683 30627698 4 70 4.5 3.0 3.8 0.8 72 chr3R 30627626 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627698 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-101 1096 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 6 7467 2.0 2.5 2.2 1.9 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-101 1097 chr3R 30690160 30690182 chr3R 30690244 30690266 10 84 5.0 2.0 3.5 2.2 106 chr3R 30690160 intergenic Spn100A + chr3R 30690213 intergenic Spn100A + chr3R 30690266 intergenic Spn100A + chr3R_10_30690001 chr3R_30690001 RAL-101 1098 chr3R 30782261 30782279 chr3R 30782384 30782402 7 123 3.0 3.5 3.2 1.7 141 chr3R 30782261 intron,intron zfh1 +,CR45189 - chr3R 30782332 intron,intron zfh1 +,CR45189 - chr3R 30782402 intron,intron zfh1 +,CR45189 - chr3R_7_30780001 chr3R_30780001 RAL-101 1099 chr3R 30850150 30850262 chr3R 30850236 30850354 6 88 0.5 0.5 0.5 4.0 204 chr3R 30850150 intergenic not near genes chr3R 30850252 intergenic not near genes chr3R 30850354 intergenic not near genes chr3R_6_30850001 chr3R_30850001 RAL-101 1100 chr3R 30888937 30888945 chr3R 30893464 30893473 5 4529 22.5 13.0 17.8 0.3 4536 chr3R 30888937 5` UTR Sap-r - chr3R 30891205 intergenic not near genes chr3R 30893473 intergenic not near genes chr3R_5_30890001 chr3R_30890001 RAL-101 1101 chr3R 30900520 30900552 chr3R 30900600 30900631 8 80 4.0 3.5 3.8 1.7 111 chr3R 30900520 exon Cyp4c3 + chr3R 30900576 3` UTR Cyp4c3 + chr3R 30900631 3` UTR Cyp4c3 + chr3R_8_30900001 chr3R_30900001 RAL-101 1102 chr3R 30973134 30973167 chr3R 30973295 30973295 6 155 1.5 2.0 1.8 2.1 161 chr3R 30973134 intron 5-HT7 - chr3R 30973214 intron 5-HT7 - chr3R 30973295 intron 5-HT7 - chr3R_6_30970001 chr3R_30970001 RAL-101 1103 chr3R 30982119 30982151 chr3R 30982198 30982230 11 79 3.0 1.5 2.2 3.4 111 chr3R 30982119 intron 5-HT7 - chr3R 30982174 intron 5-HT7 - chr3R 30982230 intron 5-HT7 - chr3R_11_30980001 chr3R_30980001 RAL-101 1104 chr3R 30987854 30987880 chr3R 30987964 30987989 9 111 2.5 2.0 2.2 2.8 135 chr3R 30987854 intron 5-HT7 - chr3R 30987922 intron 5-HT7 - chr3R 30987989 intron 5-HT7 - chr3R_9_30985001 chr3R_30985001 RAL-101 1105 chr3R 31010714 31010736 chr3R 31010796 31010818 5 83 1.0 3.5 2.2 1.6 104 chr3R 31010714 intron 5-HT7 - chr3R 31010766 intron 5-HT7 - chr3R 31010818 intron 5-HT7 - chr3R_5_31010001 chr3R_31010001 RAL-101 1106 chr3R 31020301 31020331 chr3R 31020475 31020505 11 173 2.5 1.0 1.8 3.9 204 chr3R 31020301 intergenic not near genes chr3R 31020403 intergenic not near genes chr3R 31020505 intergenic not near genes chr3R_11_31020001 chr3R_31020001 RAL-101 1107 chr3R 31074229 31074259 chr3R 31081827 31081849 springer 5 7596 5.5 3.5 4.5 0.9 7620 chr3R 31074229 intron Sox100B + chr3R 31078039 intron Sox100B + chr3R 31081849 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-101 1108 chr3R 31100043 31100070 chr3R 31100141 31100168 9 98 1.5 4.0 2.8 2.4 125 chr3R 31100043 exon CG15553 - chr3R 31100106 exon CG15553 - chr3R 31100168 exon CG15553 - chr3R_9_31100001 chr3R_31100001 RAL-101 1109 chr3R 31137164 31137183 chr3R 31137244 31137261 5 78 1.0 0.5 0.8 2.8 97 chr3R 31137164 intron Gycbeta100B + chr3R 31137212 intron Gycbeta100B + chr3R 31137261 intron Gycbeta100B + chr3R_5_31135001 chr3R_31135001 RAL-101 1110 chr3R 31413091 31413123 chr3R 31418290 31418322 copia 6 5198 3.5 0.5 2.0 2.0 5231 chr3R 31413091 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-101 1111 chr3R 31430728 31430738 chr3R 31430816 31430826 5 88 2.5 5.0 3.8 1.0 98 chr3R 31430728 intron Gprk2 + chr3R 31430777 intron Gprk2 + chr3R 31430826 intron Gprk2 + chr3R_5_31430001 chr3R_31430001 RAL-101 1112 chr3R 31435365 31435385 chr3R 31435517 31435537 4 152 1.5 3.0 2.2 1.2 172 chr3R 31435365 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435537 intron Gprk2 + chr3R_4_31435001 chr3R_31435001 RAL-101 1113 chr3R 31453218 31453249 chr3R 31453296 31453327 9 78 5.0 5.0 5.0 1.5 109 chr3R 31453218 intron Gprk2 + chr3R 31453272 intron Gprk2 + chr3R 31453327 exon Gprk2 + chr3R_9_31450001 chr3R_31450001 RAL-101 1114 chr3R 31477372 31477383 chr3R 31477540 31477551 4 168 5.0 2.5 3.8 0.8 179 chr3R 31477372 intergenic not near genes chr3R 31477462 intergenic not near genes chr3R 31477551 intergenic not near genes chr3R_4_31475001 chr3R_31475001 RAL-101 1115 chr3R 31630062 31630086 chr3R 31630166 31630191 4 104 2.0 3.5 2.8 1.1 129 chr3R 31630062 intron kek6 + chr3R 31630126 intron kek6 + chr3R 31630191 intron kek6 + chr3R_4_31630001 chr3R_31630001 RAL-101 1116 chr3R 31691523 31691533 chr3R 31696300 31696304 Doc 5 4776 4.5 4.0 4.2 1.0 4781 chr3R 31691523 intergenic not near genes chr3R 31693914 intergenic not near genes chr3R 31696304 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-101 1117 chr3R 31771306 31771332 chr3R 31771599 31771625 10 292 2.0 5.0 3.5 2.2 319 chr3R 31771306 exon CG2135 - chr3R 31771466 exon CG2135 - chr3R 31771625 exon CG2135 - chr3R_10_31770001 chr3R_31770001 RAL-101 1118 chr3R 31820291 31820323 chr3R 31820764 31820796 7 473 1.0 2.5 1.8 2.5 505 chr3R 31820291 intron RhoGAP100F + chr3R 31820544 intron RhoGAP100F + chr3R 31820796 intron RhoGAP100F + chr3R_7_31820001 chr3R_31820001 RAL-101 1119 chr3R 31879225 31879247 chr3R 31879309 31879331 4 84 1.0 1.5 1.2 1.8 106 chr3R 31879225 intron heph - chr3R 31879278 intron heph - chr3R 31879331 intron heph - chr3R_4_31875001 chr3R_31875001 RAL-101 1120 chr3R 31924119 31924129 chr3R 31924227 31924228 5 110 6.0 3.0 4.5 0.9 109 chr3R 31924119 intron heph - chr3R 31924174 intron heph - chr3R 31924228 intron heph - chr3R_5_31920001 chr3R_31920001 RAL-101 1121 chr3R 31961346 31961368 chr3R 31961429 31961436 7 79 2.0 1.5 1.8 2.5 90 chr3R 31961346 intron heph - chr3R 31961391 intron heph - chr3R 31961436 intron heph - chr3R_7_31960001 chr3R_31960001 RAL-101 1122 chr3R 31997994 31998025 chr3R 32005464 32005472 blood 6 7465 2.5 5.0 3.8 1.2 7478 chr3R 31997994 intron heph - chr3R 32001733 intron heph - chr3R 32005472 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-101 1123 chr4 418237 418267 chr4 418330 418361 7 94 1.0 2.5 1.8 2.5 124 chr4 418237 intergenic not near genes chr4 418299 intergenic not near genes chr4 418361 intergenic not near genes chr4_7_415001 chr4_415001 RAL-101 1124 chr4 654379 654396 chr4 654462 654462 7 80 0.0 1.5 0.8 3.9 83 chr4 654379 intron gw - chr4 654420 intron gw - chr4 654462 intron gw - chr4_7_650001 chr4_650001 RAL-101 1125 chr4 671605 671631 chr4 680187 680214 Tirant 5 8583 1.5 3.0 2.2 1.6 8609 chr4 671605 intron CG11360 + chr4 675910 intron CG11360 + chr4 680214 intron CG11360 + chr4_5_675001 chr4_675001 RAL-101 1126 chr4 896792 896816 chr4 896869 896890 4 76 1.0 0.5 0.8 2.2 98 chr4 896792 intron unc-13 - chr4 896841 intron unc-13 - chr4 896890 intron unc-13 - chr4_4_895001 chr4_895001 RAL-101 1127 chr4 905572 905594 chr4 905654 905675 6 82 1.0 2.5 1.8 2.1 103 chr4 905572 5` UTR unc-13 - chr4 905624 5` UTR unc-13 - chr4 905675 5` UTR unc-13 - chr4_6_905001 chr4_905001 RAL-101 1128 chrX 551420 551451 chrX 558982 559013 412 8 7562 4.0 2.5 3.2 1.9 7593 chrX 551420 intron Appl + chrX 555216 intron Appl + chrX 559013 intron Appl + chrX_8_555001 chrX_555001 RAL-101 1129 chrX 667655 667670 chrX 667738 667754 5 84 1.0 1.5 1.2 2.3 99 chrX 667655 intergenic not near genes chrX 667704 intergenic not near genes chrX 667754 intergenic not near genes chrX_5_665001 chrX_665001 RAL-101 1130 chrX 670276 670292 chrX 670348 670371 6 74 0.5 1.5 1.0 3.0 95 chrX 670276 intergenic not near genes chrX 670324 intergenic not near genes chrX 670371 intergenic not near genes chrX_6_670001 chrX_670001 RAL-101 1131 chrX 680854 680866 chrX 680922 680949 5 80 4.0 2.0 3.0 1.2 95 chrX 680854 intergenic not near genes chrX 680902 intergenic not near genes chrX 680949 intergenic not near genes chrX_5_680001 chrX_680001 RAL-101 1132 chrX 706806 706828 chrX 707169 707192 10 363 0.5 4.0 2.2 3.1 386 chrX 706806 intron sdk + chrX 706999 intron sdk + chrX 707192 intron sdk + chrX_10_705001 chrX_705001 RAL-101 1133 chrX 718330 718358 chrX 718410 718438 7 80 1.0 1.5 1.2 3.2 108 chrX 718330 intron sdk + chrX 718384 intron sdk + chrX 718438 intron sdk + chrX_7_715001 chrX_715001 RAL-101 1134 chrX 806782 806810 chrX 806878 806906 7 93 3.0 1.5 2.2 2.2 124 chrX 806782 intron Sec22 + chrX 806844 intron Sec22 + chrX 806906 intron Sec22 + chrX_7_805001 chrX_805001 RAL-101 1135 chrX 826383 826417 chrX 826544 826578 8 159 2.0 2.5 2.2 2.5 195 chrX 826383 intron CG43867 - chrX 826480 intron CG43867 - chrX 826578 intron CG43867 - chrX_8_825001 chrX_825001 RAL-101 1136 chrX 827603 827617 chrX 835395 835409 roo 5 7792 3.5 0.5 2.0 1.7 7806 chrX 827603 intron CG43867 - chrX 831506 intron CG43867 - chrX 835409 intron CG43867 - chrX_5_830001 chrX_830001 RAL-101 1137 chrX 906726 906733 chrX 908515 908522 S-element 4 1789 6.0 7.0 6.5 0.5 1796 chrX 906726 intron CG43867 - chrX 907624 intron CG43867 - chrX 908522 intron CG43867 - chrX_4_905001 chrX_905001 RAL-101 1138 chrX 1051070 1051088 chrX 1051148 1051166 6 78 8.0 3.0 5.5 0.9 96 chrX 1051070 intron CR44779 + chrX 1051118 intron CR44779 + chrX 1051166 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-101 1139 chrX 1163310 1163328 chrX 1163374 1163406 11 76 3.0 1.5 2.2 3.4 96 chrX 1163310 intergenic CG34320 - chrX 1163358 intergenic CG34320 - chrX 1163406 intergenic CG34320 - chrX_11_1160001 chrX_1160001 RAL-101 1140 chrX 1185567 1185582 chrX 1185645 1185661 4 79 1.5 1.5 1.5 1.6 94 chrX 1185567 intron CG14626 + chrX 1185614 intron CG14626 + chrX 1185661 intron CG14626 + chrX_4_1185001 chrX_1185001 RAL-101 1141 chrX 1253743 1253759 chrX 1253824 1253841 5 81 2.5 4.0 3.2 1.2 98 chrX 1253743 intron Atf3 - chrX 1253792 intron Atf3 - chrX 1253841 intron Atf3 - chrX_5_1250001 chrX_1250001 RAL-101 1142 chrX 1308121 1308150 chrX 1308205 1308234 11 82 1.0 2.0 1.5 4.4 113 chrX 1308121 intron DAAM - chrX 1308178 intron DAAM - chrX 1308234 intron DAAM - chrX_11_1305001 chrX_1305001 RAL-101 1143 chrX 1357784 1357807 chrX 1367954 1367977 Doc 4 10170 1.0 3.0 2.0 1.3 10193 chrX 1357784 intergenic png - chrX 1362880 intergenic not near genes chrX 1367977 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-101 1144 chrX 1428592 1428609 chrX 1428678 1428688 8 85 4.0 2.0 3.0 2.0 96 chrX 1428592 intron futsch + chrX 1428640 intron futsch + chrX 1428688 intron futsch + chrX_8_1425001 chrX_1425001 RAL-101 1145 chrX 1518040 1518070 chrX 1523442 1523471 jockey 4 5402 2.0 2.5 2.2 1.2 5431 chrX 1518040 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523471 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-101 1146 chrX 1560656 1560685 chrX 1560748 1560778 7 92 2.0 1.0 1.5 2.8 122 chrX 1560656 intron Mur2B - chrX 1560717 intron Mur2B - chrX 1560778 intron Mur2B - chrX_7_1560001 chrX_1560001 RAL-101 1147 chrX 2069381 2069404 chrX 2069481 2069504 4 99 1.0 0.0 0.5 2.7 123 chrX 2069381 intron,exon CG4199 -,CG4194 + chrX 2069442 intron,3` UTR CG4199 -,CG4194 + chrX 2069504 intron,3` UTR CG4199 -,CG4194 + chrX_4_2065001 chrX_2065001 RAL-101 1148 chrX 2096370 2096387 chrX 2096463 2096480 5 93 1.0 3.0 2.0 1.7 110 chrX 2096370 intron csw + chrX 2096425 intron csw + chrX 2096480 intron csw + chrX_5_2095001 chrX_2095001 RAL-101 1149 chrX 2146653 2146687 chrX 2146745 2146780 5 92 0.5 2.0 1.2 2.3 127 chrX 2146653 intron Pgd + chrX 2146716 intron Pgd + chrX 2146780 intron Pgd + chrX_5_2145001 chrX_2145001 RAL-101 1150 chrX 2399842 2399855 chrX 2408195 2408204 roo 5 8352 6.0 0.5 3.2 1.2 8362 chrX 2399842 intergenic not near genes chrX 2404023 intergenic not near genes chrX 2408204 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-101 1151 chrX 2399858 2399867 chrX 2408191 2408204 roo 6 8343 4.5 0.5 2.5 1.7 8346 chrX 2399858 intergenic not near genes chrX 2404031 intergenic not near genes chrX 2408204 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-101 1152 chrX 2578810 2578827 chrX 2578902 2578918 5 91 5.0 3.0 4.0 1.0 108 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578864 intergenic Pdfr +,Vha36-3 - chrX 2578918 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-101 1153 chrX 2886646 2886681 chrX 2886736 2886771 4 90 0.0 2.0 1.0 2.0 125 chrX 2886646 intron kirre + chrX 2886708 intron kirre + chrX 2886771 intron kirre + chrX_4_2885001 chrX_2885001 RAL-101 1154 chrX 2888115 2888129 chrX 2888193 2888207 4 78 4.0 3.0 3.5 0.9 92 chrX 2888115 intron kirre + chrX 2888161 intron kirre + chrX 2888207 intron kirre + chrX_4_2885001 chrX_2885001 RAL-101 1155 chrX 3275528 3275549 chrX 3275614 3275636 7 86 3.5 3.5 3.5 1.6 108 chrX 3275528 intron dnc + chrX 3275582 intron dnc + chrX 3275636 intron dnc + chrX_7_3275001 chrX_3275001 RAL-101 1156 chrX 3322643 3322656 chrX 3322718 3322731 4 75 0.5 2.0 1.2 1.8 88 chrX 3322643 intron,intron dnc +,CR44886 - chrX 3322687 intron,intron dnc +,CR44886 - chrX 3322731 intron,intron dnc +,CR44886 - chrX_4_3320001 chrX_3320001 RAL-101 1157 chrX 3415028 3415043 chrX 3421205 3421228 3S18 4 6183 1.0 0.0 0.5 2.7 6200 chrX 3415028 intron,intron CR44999 +,CG12535 - chrX 3418128 intron,intron CR44999 +,CG12535 - chrX 3421228 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-101 1158 chrX 3493104 3493124 chrX 3502257 3502283 roo 4 9158 2.0 0.0 1.0 2.0 9179 chrX 3493104 intron,intron CR44999 +,Gas8 - chrX 3497694 intron,intron CR44999 +,Gas8 - chrX 3502283 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-101 1159 chrX 3516821 3516843 chrX 3516920 3516942 7 95 2.5 2.5 2.5 2.0 121 chrX 3516821 intron,intron CR44999 +,CG32791 - chrX 3516882 intron,intron CR44999 +,CG32791 - chrX 3516942 intron,intron CR44999 +,CG32791 - chrX_7_3515001 chrX_3515001 RAL-101 1160 chrX 3597556 3597576 chrX 3619723 3619727 roo 6 22165 3.0 1.0 2.0 2.0 22171 chrX 3597556 intron AstA-R1 + chrX 3608642 intron AstA-R1 + chrX 3619727 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-101 1161 chrX 3650336 3650352 chrX 3650416 3650432 5 80 1.0 5.0 3.0 1.2 96 chrX 3650336 intron AstA-R1 + chrX 3650384 intron AstA-R1 + chrX 3650432 intron AstA-R1 + chrX_5_3650001 chrX_3650001 RAL-101 1162 chrX 3657430 3657447 chrX 3657498 3657526 6 78 4.0 1.5 2.8 1.6 96 chrX 3657430 intron AstA-R1 + chrX 3657478 intron AstA-R1 + chrX 3657526 intron AstA-R1 + chrX_6_3655001 chrX_3655001 RAL-101 1163 chrX 3662486 3662497 chrX 3662570 3662577 5 83 2.5 0.5 1.5 2.0 91 chrX 3662486 intron AstA-R1 + chrX 3662532 intron AstA-R1 + chrX 3662577 intron AstA-R1 + chrX_5_3660001 chrX_3660001 RAL-101 1164 chrX 3726764 3726786 chrX 3730160 3730163 NOF 4 3392 0.5 1.0 0.8 2.2 3399 chrX 3726764 intron tlk + chrX 3728464 intron tlk + chrX 3730163 intron tlk + chrX_4_3725001 chrX_3725001 RAL-101 1165 chrX 3908153 3908179 chrX 3908238 3908263 4 85 2.0 2.0 2.0 1.3 110 chrX 3908153 intron CG42541 - chrX 3908208 intron CG42541 - chrX 3908263 intron CG42541 - chrX_4_3905001 chrX_3905001 RAL-101 1166 chrX 3986865 3986896 chrX 3994498 3994528 412 6 7633 4.0 2.5 3.2 1.4 7663 chrX 3986865 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994528 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-101 1167 chrX 4021166 4021194 chrX 4021264 4021292 8 97 1.5 2.0 1.8 2.9 126 chrX 4021166 intergenic not near genes chrX 4021229 intergenic not near genes chrX 4021292 intergenic not near genes chrX_8_4020001 chrX_4020001 RAL-101 1168 chrX 4337929 4337950 chrX 4338052 4338073 8 121 1.5 1.0 1.2 3.6 144 chrX 4337929 intron norpA + chrX 4338001 intron norpA + chrX 4338073 intron norpA + chrX_8_4335001 chrX_4335001 RAL-101 1169 chrX 4396981 4397010 chrX 4397064 4397095 6 84 0.5 2.5 1.5 2.4 114 chrX 4396981 intron CR32773 - chrX 4397038 intron CR32773 - chrX 4397095 intron CR32773 - chrX_6_4395001 chrX_4395001 RAL-101 1170 chrX 4436463 4436471 chrX 4436539 4436543 4 75 8.0 0.0 4.0 0.8 80 chrX 4436463 intron,intron CR32773 -,bi + chrX 4436503 intron,intron CR32773 -,bi + chrX 4436543 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-101 1171 chrX 4499600 4499625 chrX 4499792 4499817 4 192 1.5 2.5 2.0 1.3 217 chrX 4499600 intron CR32773 - chrX 4499708 intron CR32773 - chrX 4499817 intron CR32773 - chrX_4_4495001 chrX_4495001 RAL-101 1172 chrX 4505596 4505628 chrX 4505727 4505755 7 130 1.5 2.5 2.0 2.3 159 chrX 4505596 intron CR32773 - chrX 4505676 intron CR32773 - chrX 4505755 intron CR32773 - chrX_7_4505001 chrX_4505001 RAL-101 1173 chrX 4515842 4515848 chrX 4515920 4515926 4 78 1.5 3.0 2.2 1.2 84 chrX 4515842 intron CR32773 - chrX 4515884 intron CR32773 - chrX 4515926 intron CR32773 - chrX_4_4515001 chrX_4515001 RAL-101 1174 chrX 4576534 4576549 chrX 4576613 4576628 7 78 1.5 0.0 0.8 3.9 94 chrX 4576534 intron CR32773 - chrX 4576581 intron CR32773 - chrX 4576628 intron CR32773 - chrX_7_4575001 chrX_4575001 RAL-101 1175 chrX 4731815 4731828 chrX 4736907 4736920 jockey 7 5092 6.5 3.5 5.0 1.2 5105 chrX 4731815 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736920 intergenic not near genes chrX_7_4730001 chrX_4730001 RAL-101 1176 chrX 4757386 4757402 chrX 4757464 4757477 7 78 1.0 1.0 1.0 3.5 91 chrX 4757386 intergenic not near genes chrX 4757432 intergenic not near genes chrX 4757477 intergenic not near genes chrX_7_4755001 chrX_4755001 RAL-101 1177 chrX 4763248 4763284 chrX 4763736 4763772 Stalker4 5 487 2.5 0.5 1.5 2.0 524 chrX 4763248 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763772 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-101 1178 chrX 4792379 4792397 chrX 4792812 4792830 jockey 4 433 3.0 4.5 3.8 0.8 451 chrX 4792379 intergenic not near genes chrX 4792604 intergenic not near genes chrX 4792830 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-101 1179 chrX 4887271 4887293 chrX 4887774 4887797 4 504 5.5 0.5 3.0 1.0 526 chrX 4887271 intron CG42594 + chrX 4887534 intron CG42594 + chrX 4887797 intron CG42594 + chrX_4_4885001 chrX_4885001 RAL-101 1180 chrX 6118697 6118726 chrX 6118779 6118807 8 82 1.5 2.5 2.0 2.7 110 chrX 6118697 intron Ca-alpha1T - chrX 6118752 intron Ca-alpha1T - chrX 6118807 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-101 1181 chrX 6134414 6134444 chrX 6134539 6134569 5 125 1.0 2.0 1.5 2.0 155 chrX 6134414 intron Ca-alpha1T - chrX 6134492 intron Ca-alpha1T - chrX 6134569 intron Ca-alpha1T - chrX_5_6130001 chrX_6130001 RAL-101 1182 chrX 6164307 6164324 chrX 6164393 6164410 4 86 0.5 1.5 1.0 2.0 103 chrX 6164307 intron Ca-alpha1T - chrX 6164358 intron Ca-alpha1T - chrX 6164410 intron Ca-alpha1T - chrX_4_6160001 chrX_6160001 RAL-101 1183 chrX 6171587 6171605 chrX 6179019 6179038 Quasimodo 4 7433 3.0 2.5 2.8 1.1 7451 chrX 6171587 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179038 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-101 1184 chrX 6265450 6265466 chrX 6265527 6265543 5 77 0.5 1.0 0.8 2.8 93 chrX 6265450 intron schlank - chrX 6265496 intron schlank - chrX 6265543 intron schlank - chrX_5_6265001 chrX_6265001 RAL-101 1185 chrX 6335220 6335238 chrX 6337728 6337748 Tirant 4 2510 0.0 2.5 1.2 1.8 2528 chrX 6335220 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337748 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-101 1186 chrX 6381099 6381117 chrX 6381500 6381523 4 405 0.5 2.0 1.2 1.8 424 chrX 6381099 intergenic not near genes chrX 6381311 intergenic not near genes chrX 6381523 intergenic not near genes chrX_4_6380001 chrX_6380001 RAL-101 1187 chrX 6392868 6392904 chrX 6397633 6397662 Doc 7 4764 2.0 2.5 2.2 2.2 4794 chrX 6392868 intergenic not near genes chrX 6395265 intergenic not near genes chrX 6397662 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-101 1188 chrX 6444335 6444367 chrX 6444801 6444833 7 467 2.0 4.0 3.0 1.8 498 chrX 6444335 intron CG42340 - chrX 6444584 intron CG42340 - chrX 6444833 intron CG42340 - chrX_7_6440001 chrX_6440001 RAL-101 1189 chrX 6562829 6562845 chrX 6571306 6571326 Tirant 6 8480 0.5 5.0 2.8 1.6 8497 chrX 6562829 intron CG34417 + chrX 6567078 intron CG34417 + chrX 6571326 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-101 1190 chrX 6687899 6687918 chrX 6688039 6688067 6 140 10.0 15.0 12.5 0.4 168 chrX 6687899 exon CG3184 - chrX 6687983 exon CG3184 - chrX 6688067 exon CG3184 - chrX_6_6685001 chrX_6685001 RAL-101 1191 chrX 6686914 6686945 chrX 6689547 6689579 4 2633 11.5 14.0 12.8 0.3 2665 chrX 6686914 3` UTR Pink1 + chrX 6688246 exon CG3184 - chrX 6689579 3` UTR CG14442 - chrX_4_6685001 chrX_6685001 RAL-101 1192 chrX 6795011 6795027 chrX 6795097 6795112 4 86 1.5 3.5 2.5 1.1 101 chrX 6795011 intron C3G - chrX 6795062 intron C3G - chrX 6795112 intron C3G - chrX_4_6795001 chrX_6795001 RAL-101 1193 chrX 6859562 6859572 chrX 6859975 6859984 4 413 2.5 0.0 1.2 1.8 422 chrX 6859562 intron CG14434 - chrX 6859773 intron CG14434 - chrX 6859984 intron CG14434 - chrX_4_6855001 chrX_6855001 RAL-101 1194 chrX 6933492 6933520 chrX 6933949 6933977 7 457 1.5 4.5 3.0 1.8 485 chrX 6933492 intron CG14431 + chrX 6933734 intron CG14431 + chrX 6933977 intron CG14431 + chrX_7_6930001 chrX_6930001 RAL-101 1195 chrX 6969891 6969921 chrX 6970044 6970069 4 152 18.5 15.5 17.0 0.2 178 chrX 6969891 intergenic CG4586 + chrX 6969980 5` UTR CG4586 + chrX 6970069 exon CG4586 + chrX_4_6965001 chrX_6965001 RAL-101 1196 chrX 7023604 7023634 chrX 7030994 7031024 Tabor 10 7390 3.5 4.0 3.8 2.1 7420 chrX 7023604 intron CG12541 - chrX 7027314 intron CG12541 - chrX 7031024 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-101 1197 chrX 7125262 7125275 chrX 7134421 7134434 roo 4 9159 0.5 4.0 2.2 1.2 9172 chrX 7125262 intergenic not near genes chrX 7129848 intergenic not near genes chrX 7134434 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-101 1198 chrX 7268369 7268401 chrX 7268447 7268479 5 78 3.0 1.0 2.0 1.7 110 chrX 7268369 intron CR44357 - chrX 7268424 intron CR44357 - chrX 7268479 intron CR44357 - chrX_5_7265001 chrX_7265001 RAL-101 1199 chrX 7560162 7560189 chrX 7560247 7560266 4 80 2.0 0.5 1.2 1.8 104 chrX 7560162 intergenic not near genes chrX 7560214 intergenic not near genes chrX 7560266 intergenic not near genes chrX_4_7560001 chrX_7560001 RAL-101 1200 chrX 7702509 7702522 chrX 7702601 7702614 5 91 1.5 6.5 4.0 1.0 105 chrX 7702509 intron CHES-1-like - chrX 7702562 intron CHES-1-like - chrX 7702614 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-101 1201 chrX 7793233 7793269 chrX 7793312 7793348 5 79 3.0 1.0 2.0 1.7 115 chrX 7793233 intergenic not near genes chrX 7793290 intergenic not near genes chrX 7793348 intergenic not near genes chrX_5_7790001 chrX_7790001 RAL-101 1202 chrX 7845434 7845470 chrX 7845540 7845576 17 105 2.0 2.5 2.2 5.3 142 chrX 7845434 intergenic not near genes chrX 7845505 intergenic not near genes chrX 7845576 intergenic not near genes chrX_17_7845001 chrX_7845001 RAL-101 1203 chrX 7881854 7881875 chrX 7881936 7881957 4 82 1.5 1.0 1.2 1.8 103 chrX 7881854 intergenic Ir7f -,Ir7e - chrX 7881906 intergenic Ir7f -,Ir7e - chrX 7881957 3` UTR Ir7f - chrX_4_7880001 chrX_7880001 RAL-101 1204 chrX 8163626 8163650 chrX 8163708 8163731 7 82 0.0 2.5 1.2 3.2 105 chrX 8163626 intergenic CR45536 + chrX 8163678 intergenic CR45536 + chrX 8163731 intergenic CR45536 + chrX_7_8160001 chrX_8160001 RAL-101 1205 chrX 8299874 8299895 chrX 8300009 8300030 4 135 1.0 2.5 1.8 1.4 156 chrX 8299874 intron nAChRalpha3 - chrX 8299952 intron nAChRalpha3 - chrX 8300030 intron nAChRalpha3 - chrX_4_8295001 chrX_8295001 RAL-101 1206 chrX 8536762 8536780 chrX 8536838 8536856 5 76 5.5 3.0 4.2 1.0 94 chrX 8536762 intron Nrg + chrX 8536809 intron Nrg + chrX 8536856 intron Nrg + chrX_5_8535001 chrX_8535001 RAL-101 1207 chrX 8787488 8787501 chrX 8787584 8787597 4 96 0.5 3.5 2.0 1.3 109 chrX 8787488 intron Lim1 - chrX 8787542 intron Lim1 - chrX 8787597 intron Lim1 - chrX_4_8785001 chrX_8785001 RAL-101 1208 chrX 8894100 8894132 chrX 8894201 8894233 10 99 2.0 1.5 1.8 3.6 133 chrX 8894100 intron Moe - chrX 8894166 intron Moe - chrX 8894233 intron Moe - chrX_10_8890001 chrX_8890001 RAL-101 1209 chrX 8922334 8922360 chrX 8922768 8922794 jockey 8 434 3.5 2.5 3.0 2.0 460 chrX 8922334 intron rdgA + chrX 8922564 intron rdgA + chrX 8922794 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-101 1210 chrX 9337950 9337970 chrX 9338039 9338061 6 91 0.5 5.5 3.0 1.5 111 chrX 9337950 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338061 exon CG34449 - chrX_6_9335001 chrX_9335001 RAL-101 1211 chrX 9471191 9471208 chrX 9471282 9471299 4 88 1.5 2.5 2.0 1.3 108 chrX 9471191 intron mgl - chrX 9471245 intron mgl - chrX 9471299 intron mgl - chrX_4_9470001 chrX_9470001 RAL-101 1212 chrX 9575802 9575824 chrX 9576114 9576148 mdg3 7 322 4.5 3.5 4.0 1.4 346 chrX 9575802 intron,exon CG32699 -,CG42395 - chrX 9575975 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-101 1213 chrX 10150012 10150034 chrX 10150235 10150243 4 219 3.0 0.5 1.8 1.4 231 chrX 10150012 intron CR44894 - chrX 10150128 intron CR44894 - chrX 10150243 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-101 1214 chrX 10361711 10361746 chrX 10361808 10361841 7 94 0.5 1.0 0.8 3.9 130 chrX 10361711 intron l(1)G0289 - chrX 10361776 intron l(1)G0289 - chrX 10361841 intron l(1)G0289 - chrX_7_10360001 chrX_10360001 RAL-101 1215 chrX 10550336 10550356 chrX 10550414 10550434 4 78 2.0 0.0 1.0 2.0 98 chrX 10550336 intron spri - chrX 10550385 intron spri - chrX 10550434 intron spri - chrX_4_10550001 chrX_10550001 RAL-101 1216 chrX 10686054 10686076 chrX 10691191 10691213 roo 4 5137 1.5 0.5 1.0 2.0 5159 chrX 10686054 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691213 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-101 1217 chrX 10719134 10719151 chrX 10719199 10719235 4 78 0.0 1.0 0.5 2.7 101 chrX 10719134 intron CG32676 - chrX 10719184 intron CG32676 - chrX 10719235 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-101 1218 chrX 10795730 10795762 chrX 10795877 10795880 7 137 1.0 0.5 0.8 3.9 150 chrX 10795730 3` UTR,3` UTR Imp -,CR45204 - chrX 10795805 3` UTR,3` UTR Imp -,CR45204 - chrX 10795880 3` UTR,3` UTR Imp -,CR45204 - chrX_7_10795001 chrX_10795001 RAL-101 1219 chrX 11051455 11051489 chrX 11051536 11051569 8 80 1.5 1.0 1.2 3.6 114 chrX 11051455 intergenic not near genes chrX 11051512 intergenic not near genes chrX 11051569 intergenic not near genes chrX_8_11050001 chrX_11050001 RAL-101 1220 chrX 11205297 11205324 chrX 11205373 11205399 7 76 1.5 1.0 1.2 3.2 102 chrX 11205297 intergenic not near genes chrX 11205348 intergenic not near genes chrX 11205399 intergenic not near genes chrX_7_11205001 chrX_11205001 RAL-101 1221 chrX 11268578 11268596 chrX 11270071 11270075 hopper2 6 1489 2.0 7.5 4.8 1.0 1497 chrX 11268578 intron CG44422 - chrX 11269326 intron CG44422 - chrX 11270075 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-101 1222 chrX 11922373 11922383 chrX 11922502 11922510 5 131 1.0 1.0 1.0 2.5 137 chrX 11922373 exon Sclp - chrX 11922442 intron Sclp - chrX 11922510 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-101 1223 chrX 12019444 12019469 chrX 12019522 12019547 8 78 3.5 4.5 4.0 1.6 103 chrX 12019444 intron CG15735 + chrX 12019496 intron CG15735 + chrX 12019547 intron CG15735 + chrX_8_12015001 chrX_12015001 RAL-101 1224 chrX 12068583 12068610 chrX 12068664 12068691 7 81 2.5 0.5 1.5 2.8 108 chrX 12068583 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12068637 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12068691 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_7_12065001 chrX_12065001 RAL-101 1225 chrX 12168136 12168165 chrX 12173577 12173603 I-element 4 5440 0.5 2.5 1.5 1.6 5467 chrX 12168136 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173603 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-101 1226 chrX 12176747 12176762 chrX 12176821 12176838 7 75 2.0 3.5 2.8 1.8 91 chrX 12176747 intron,3` UTR Ten-a +,CG1924 - chrX 12176792 intron,3` UTR Ten-a +,CG1924 - chrX 12176838 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-101 1227 chrX 12350773 12350800 chrX 12350854 12350881 8 80 3.5 0.0 1.8 2.9 108 chrX 12350773 intergenic not near genes chrX 12350827 intergenic not near genes chrX 12350881 intergenic not near genes chrX_8_12350001 chrX_12350001 RAL-101 1228 chrX 12363339 12363368 chrX 12363417 12363447 5 78 0.0 0.5 0.2 4.2 108 chrX 12363339 intergenic not near genes chrX 12363393 intergenic not near genes chrX 12363447 intergenic not near genes chrX_5_12360001 chrX_12360001 RAL-101 1229 chrX 12985980 12986004 chrX 12986074 12986099 10 96 0.5 4.5 2.5 2.9 119 chrX 12985980 intergenic not near genes chrX 12986040 intergenic not near genes chrX 12986099 intergenic not near genes chrX_10_12985001 chrX_12985001 RAL-101 1230 chrX 13110407 13110429 chrX 13110493 13110514 6 86 2.5 1.0 1.8 2.1 107 chrX 13110407 intron CG43313 - chrX 13110460 intron CG43313 - chrX 13110514 intron CG43313 - chrX_6_13110001 chrX_13110001 RAL-101 1231 chrX 13161690 13161714 chrX 13161767 13161791 4 77 0.5 2.5 1.5 1.6 101 chrX 13161690 3` UTR CG12096 + chrX 13161740 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161791 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-101 1232 chrX 13172370 13172380 chrX 13172426 13172454 4 70 0.5 2.0 1.2 1.8 84 chrX 13172370 exon CG34411 - chrX 13172412 intron CG34411 - chrX 13172454 intron CG34411 - chrX_4_13170001 chrX_13170001 RAL-101 1233 chrX 13390919 13390945 chrX 13391135 13391160 5 214 2.5 1.0 1.8 1.8 241 chrX 13390919 intergenic CR44620 - chrX 13391040 intergenic CR44620 - chrX 13391160 intergenic not near genes chrX_5_13390001 chrX_13390001 RAL-101 1234 chrX 14105023 14105055 chrX 14114171 14114201 roo 9 9143 5.0 3.0 4.0 1.8 9178 chrX 14105023 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-101 1235 chrX 14131491 14131521 chrX 14131572 14131602 9 79 2.0 1.5 1.8 3.2 111 chrX 14131491 intergenic not near genes chrX 14131546 intergenic not near genes chrX 14131602 intergenic not near genes chrX_9_14130001 chrX_14130001 RAL-101 1236 chrX 14512136 14512164 chrX 14512215 14512235 7 76 2.5 4.5 3.5 1.6 99 chrX 14512136 intergenic not near genes chrX 14512186 intergenic not near genes chrX 14512235 intergenic not near genes chrX_7_14510001 chrX_14510001 RAL-101 1237 chrX 14636460 14636492 chrX 14641901 14641933 I-element 9 5440 2.0 3.0 2.5 2.6 5473 chrX 14636460 intron NetA - chrX 14639196 intron NetA - chrX 14641933 intron NetA - chrX_9_14635001 chrX_14635001 RAL-101 1238 chrX 14714056 14714064 chrX 14714131 14714146 5 81 1.0 1.5 1.2 2.3 90 chrX 14714056 intron NetB - chrX 14714101 intron NetB - chrX 14714146 intron NetB - chrX_5_14710001 chrX_14710001 RAL-101 1239 chrX 14936847 14936893 chrX 14946114 14946150 roo 7 9258 0.0 1.5 0.8 3.9 9303 chrX 14936847 intron pdgy - chrX 14941498 intron pdgy - chrX 14946150 intron pdgy - chrX_7_14940001 chrX_14940001 RAL-101 1240 chrX 15273708 15273737 chrX 15274875 15274904 1360 4 1165 1.0 1.5 1.2 1.8 1196 chrX 15273708 intergenic not near genes chrX 15274306 intergenic not near genes chrX 15274904 intergenic not near genes chrX_4_15270001 chrX_15270001 RAL-101 1241 chrX 15413050 15413085 chrX 15417352 15417387 Juan 9 4301 2.5 1.5 2.0 3.0 4337 chrX 15413050 intron Cngl - chrX 15415218 intron Cngl - chrX 15417387 intron Cngl - chrX_9_15415001 chrX_15415001 RAL-101 1242 chrX 15435694 15435701 chrX 15436127 15436134 rover 4 433 0.0 3.0 1.5 1.6 440 chrX 15435694 intron Cngl - chrX 15435914 intron Cngl - chrX 15436134 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-101 1243 chrX 15536674 15536704 chrX 15536783 15536813 8 109 1.5 3.0 2.2 2.5 139 chrX 15536674 intron Ac13E - chrX 15536744 intron Ac13E - chrX 15536813 intron Ac13E - chrX_8_15535001 chrX_15535001 RAL-101 1244 chrX 15678047 15678065 chrX 15678114 15678141 5 73 3.0 1.0 2.0 1.7 94 chrX 15678047 intergenic CG12708 + chrX 15678094 intergenic CG12708 + chrX 15678141 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-101 1245 chrX 16329434 16329444 chrX 16329517 16329527 5 81 0.0 3.0 1.5 2.0 93 chrX 16329434 intron CG9919 - chrX 16329480 intron CG9919 - chrX 16329527 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-101 1246 chrX 16492649 16492678 chrX 16498226 16498255 mdg3 4 5577 2.5 1.0 1.8 1.4 5606 chrX 16492649 intron para - chrX 16495452 intron para - chrX 16498255 intron para - chrX_4_16495001 chrX_16495001 RAL-101 1247 chrX 17011971 17011998 chrX 17012054 17012081 5 82 1.0 4.5 2.8 1.3 110 chrX 17011971 intron CG45002 - chrX 17012026 intron CG45002 - chrX 17012081 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-101 1248 chrX 17282875 17282906 chrX 17282952 17282984 8 78 2.5 0.0 1.2 3.6 109 chrX 17282875 intron CG5445 + chrX 17282930 5` UTR CG5445 + chrX 17282984 intron CG5445 + chrX_8_17280001 chrX_17280001 RAL-101 1249 chrX 17352606 17352619 chrX 17352709 17352722 4 103 0.0 1.0 0.5 2.7 116 chrX 17352606 intergenic not near genes chrX 17352664 intergenic not near genes chrX 17352722 intergenic not near genes chrX_4_17350001 chrX_17350001 RAL-101 1250 chrX 17680892 17680924 chrX 17680967 17681001 12 76 2.0 3.5 2.8 3.2 109 chrX 17680892 intron chas - chrX 17680946 intron chas - chrX 17681001 intron chas - chrX_12_17680001 chrX_17680001 RAL-101 1251 chrX 17740377 17740402 chrX 17740452 17740479 5 67 2.0 3.5 2.8 1.3 102 chrX 17740377 intron CG42684 + chrX 17740428 intron CG42684 + chrX 17740479 intron CG42684 + chrX_5_17740001 chrX_17740001 RAL-101 1252 chrX 18122823 18122830 chrX 18122898 18122906 5 76 2.5 2.5 2.5 1.4 83 chrX 18122823 5` UTR CR45606 + chrX 18122864 5` UTR CR45606 + chrX 18122906 5` UTR CR45606 + chrX_5_18120001 chrX_18120001 RAL-101 1253 chrX 18122832 18122853 chrX 18122895 18122896 5 67 1.0 2.5 1.8 1.8 64 chrX 18122832 5` UTR CR45606 + chrX 18122864 5` UTR CR45606 + chrX 18122896 5` UTR CR45606 + chrX_5_18120001 chrX_18120001 RAL-101 1254 chrX 18427399 18427405 chrX 18427791 18427816 5 403 1.0 1.0 1.0 2.5 417 chrX 18427399 intergenic CG42323 + chrX 18427608 intergenic not near genes chrX 18427816 intergenic not near genes chrX_5_18425001 chrX_18425001 RAL-101 1255 chrX 18645017 18645049 chrX 18645114 18645147 6 98 2.5 1.0 1.8 2.1 130 chrX 18645017 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645147 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-101 1256 chrX 18780327 18780342 chrX 18780410 18780426 6 83 1.0 1.5 1.2 2.7 99 chrX 18780327 intron CG6891 + chrX 18780376 intron CG6891 + chrX 18780426 intron CG6891 + chrX_6_18780001 chrX_18780001 RAL-101 1257 chrX 19099666 19099687 chrX 19099747 19099770 6 83 1.0 2.5 1.8 2.1 104 chrX 19099666 intergenic not near genes chrX 19099718 intergenic not near genes chrX 19099770 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-101 1258 chrX 19176214 19176240 chrX 19176298 19176324 8 84 3.5 3.0 3.2 1.9 110 chrX 19176214 3` UTR CG7556 - chrX 19176269 3` UTR CG7556 - chrX 19176324 3` UTR CG7556 - chrX_8_19175001 chrX_19175001 RAL-101 1259 chrX 19315757 19315782 chrX 19315858 19315864 7 97 4.0 0.0 2.0 2.3 107 chrX 19315757 intron out - chrX 19315810 intron out - chrX 19315864 intron out - chrX_7_19315001 chrX_19315001 RAL-101 1260 chrX 19380157 19380175 chrX 19380398 19380416 pogo 4 241 3.5 1.5 2.5 1.1 259 chrX 19380157 intron kek5 + chrX 19380286 intron kek5 + chrX 19380416 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-101 1261 chrX 19472127 19472158 chrX 19472694 19472723 jockey 8 568 1.5 1.0 1.2 3.6 596 chrX 19472127 intergenic kek5 + chrX 19472425 intergenic not near genes chrX 19472723 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-101 1262 chrX 19495371 19495401 chrX 19495468 19495498 8 97 0.0 6.0 3.0 2.0 127 chrX 19495371 3` UTR CR44340 - chrX 19495434 3` UTR CR44340 - chrX 19495498 3` UTR CR44340 - chrX_8_19495001 chrX_19495001 RAL-101 1263 chrX 19593953 19593976 chrX 19594038 19594061 11 84 2.5 6.0 4.2 2.1 108 chrX 19593953 exon CG14205 + chrX 19594007 intron CG14205 + chrX 19594061 intron CG14205 + chrX_11_19590001 chrX_19590001 RAL-101 1264 chrX 19710074 19710096 chrX 19711859 19711878 S-element 10 1785 2.5 4.5 3.5 2.2 1804 chrX 19710074 intron meso18E - chrX 19710976 intron meso18E - chrX 19711878 intron meso18E - chrX_10_19710001 chrX_19710001 RAL-101 1265 chrX 19739035 19739059 chrX 19739335 19739359 6 300 2.5 2.5 2.5 1.7 324 chrX 19739035 3` UTR CG14234 + chrX 19739197 3` UTR CG14234 + chrX 19739359 3` UTR CG14234 + chrX_6_19735001 chrX_19735001 RAL-101 1266 chrX 19744651 19744658 chrX 19744761 19744776 4 116 17.5 12.5 15.0 0.2 125 chrX 19744651 5` UTR,exon CG33932 +,Rpp20 + chrX 19744714 intron,intron CG33932 +,Rpp20 + chrX 19744776 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-101 1267 chrX 19897383 19897415 chrX 19897460 19897492 10 74 1.5 1.0 1.2 4.5 109 chrX 19897383 intron Hers + chrX 19897438 intron Hers + chrX 19897492 intron Hers + chrX_10_19895001 chrX_19895001 RAL-101 1268 chrX 19983530 19983539 chrX 19983689 19983698 4 159 0.0 0.0 0.0 4.0 168 chrX 19983530 intergenic not near genes chrX 19983614 intergenic not near genes chrX 19983698 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-101 1269 chrX 20018017 20018036 chrX 20018094 20018112 5 74 1.5 2.5 2.0 1.7 95 chrX 20018017 intron Dop2R - chrX 20018064 intron Dop2R - chrX 20018112 intron Dop2R - chrX_5_20015001 chrX_20015001 RAL-101 1270 chrX 20041532 20041566 chrX 20041612 20041646 7 80 0.0 0.0 0.0 7.0 114 chrX 20041532 intron Dop2R - chrX 20041589 intron Dop2R - chrX 20041646 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-101 1271 chrX 20312885 20312907 chrX 20312962 20312985 6 78 0.5 0.5 0.5 4.0 100 chrX 20312885 intron CG1504 - chrX 20312935 intron CG1504 - chrX 20312985 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-101 1272 chrX 20369324 20369342 chrX 20369405 20369426 5 83 0.5 3.0 1.8 1.8 102 chrX 20369324 intergenic not near genes chrX 20369375 intergenic not near genes chrX 20369426 intergenic not near genes chrX_5_20365001 chrX_20365001 RAL-101 1273 chrX 20504134 20504157 chrX 20505655 20505678 transib2 8 1521 1.0 6.0 3.5 1.8 1544 chrX 20504134 intron RhoGAP19D - chrX 20504906 intron RhoGAP19D - chrX 20505678 intron RhoGAP19D - chrX_8_20500001 chrX_20500001 RAL-101 1274 chrX 20540152 20540162 chrX 20540236 20540246 4 84 2.5 4.0 3.2 1.0 94 chrX 20540152 intron RunxB + chrX 20540199 intron RunxB + chrX 20540246 intron RunxB + chrX_4_20540001 chrX_20540001 RAL-101 1275 chrX 20860257 20860278 chrX 20860356 20860376 8 99 0.5 3.5 2.0 2.7 119 chrX 20860257 intron shakB - chrX 20860316 intron shakB - chrX 20860376 intron shakB - chrX_8_20860001 chrX_20860001 RAL-101 1276 chrX 20915042 20915071 chrX 20915213 20915242 5 171 1.0 1.0 1.0 2.5 200 chrX 20915042 intron shakB - chrX 20915142 intron shakB - chrX 20915242 intron shakB - chrX_5_20915001 chrX_20915001 RAL-101 1277 chrX 20940717 20940755 chrX 20942186 20942224 hobo 9 1464 3.5 4.0 3.8 1.9 1507 chrX 20940717 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942224 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-101 1278 chrX 20981037 20981056 chrX 20981140 20981159 6 103 0.5 2.0 1.2 2.7 122 chrX 20981037 intergenic not near genes chrX 20981098 intergenic not near genes chrX 20981159 intergenic not near genes chrX_6_20980001 chrX_20980001 RAL-101 1279 chrX 21086133 21086160 chrX 21087161 21087189 jockey 7 1027 2.0 1.0 1.5 2.8 1056 chrX 21086133 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087189 intergenic not near genes chrX_7_21085001 chrX_21085001 RAL-101 1280 chrX 21419704 21419728 chrX 21419793 21419813 4 87 3.0 1.5 2.2 1.2 109 chrX 21419704 intergenic not near genes chrX 21419758 intergenic not near genes chrX 21419813 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-101 1281 chrX 21467014 21467026 chrX 21467097 21467110 5 84 2.5 0.0 1.2 2.3 96 chrX 21467014 intergenic CR45507 - chrX 21467062 intergenic CR45507 - chrX 21467110 intergenic CR45507 - chrX_5_21465001 chrX_21465001 RAL-101 1282 chrX 21474405 21474432 chrX 21474771 21474797 1731 8 366 1.0 3.0 2.0 2.7 392 chrX 21474405 intergenic not near genes chrX 21474601 intergenic not near genes chrX 21474797 intergenic not near genes chrX_8_21470001 chrX_21470001 RAL-101 1283 chrX 21631093 21631115 chrX 21631168 21631200 5 77 0.5 0.5 0.5 3.3 107 chrX 21631093 intron CR44712 + chrX 21631146 5` UTR CR44712 + chrX 21631200 5` UTR CR44712 + chrX_5_21630001 chrX_21630001 RAL-101 1284 chrX 22659203 22659224 chrX 22659282 22659303 6 78 1.0 1.0 1.0 3.0 100 chrX 22659203 intron CR44997 + chrX 22659253 intron CR44997 + chrX 22659303 intron CR44997 + chrX_6_22655001 chrX_22655001 RAL-101 1285 chrX 22681480 22681514 chrX 22688938 22688972 HMS-Beagle2 5 7458 2.5 1.5 2.0 1.7 7492 chrX 22681480 intron CR44997 + chrX 22685226 intron CR44997 + chrX 22688972 intron CR44997 + chrX_5_22685001 chrX_22685001 RAL-101 1286 chrX 22867984 22868000 chrX 22868098 22868114 6 114 2.0 0.0 1.0 3.0 130 chrX 22867984 exon CG42346 + chrX 22868049 intron CG42346 + chrX 22868114 intron CG42346 + chrX_6_22865001 chrX_22865001 RAL-101 1287 chrX 22992397 22992427 chrX 22992528 22992558 7 131 1.0 2.0 1.5 2.8 161 chrX 22992397 intron,intron stnA -,stnB - chrX 22992478 intron,intron stnA -,stnB - chrX 22992558 intron,intron stnA -,stnB - chrX_7_22990001 chrX_22990001 RAL-101 1288 chrX 22996324 22996340 chrX 23003556 23003572 roo 5 7232 1.5 1.5 1.5 2.0 7248 chrX 22996324 intron,intron stnA -,stnB - chrX 22999948 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 RAL-101 1289 chrY 975793 975818 chrY 975873 975886 7 90 98.0 106.0 102.0 0.1 93 chrY 975793 intergenic not near genes chrY 975840 intergenic not near genes chrY 975886 intergenic not near genes chrY_7_975001 chrY_975001 RAL-101