SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47455	47490	chr2L	52561	52596	jockey	26	5106	10.0	7.5	8.8	2.7	5141	chr2L	47455	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52596	intron	Cda5 -	chr2L_26_50001	chr2L_50001	RC1_1-HE
10	chr2L	347883	347917	chr2L	355384	355418	blood	9	7501	2.0	1.0	1.5	3.6	7535	chr2L	347883	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355418	3` UTR	Plc21C +	chr2L_9_350001	chr2L_350001	RC1_1-HE
17	chr2L	686919	686951	chr2L	695957	695992	roo	12	9041	1.5	3.0	2.2	3.8	9073	chr2L	686919	intron	ds -	chr2L	691456	intron	ds -	chr2L	695992	intron	ds -	chr2L_12_690001	chr2L_690001	RC1_1-HE
21	chr2L	770462	770494	chr2L	772244	772282	Bari1	7	1783	6.5	1.5	4.0	1.4	1820	chr2L	770462	intergenic	not near genes	chr2L	771372	intergenic	not near genes	chr2L	772282	intergenic	CR44614 +	chr2L_7_770001	chr2L_770001	RC1_1-HE
25	chr2L	976880	976906	chr2L	984517	984543	roo	10	7637	5.5	3.5	4.5	1.8	7663	chr2L	976880	intergenic	not near genes	chr2L	980712	intergenic	not near genes	chr2L	984543	intergenic	not near genes	chr2L_10_980001	chr2L_980001	RC1_1-HE
31	chr2L	1220129	1220162	chr2L	1227596	1227629	blood	21	7466	4.0	3.0	3.5	4.7	7500	chr2L	1220129	intron	CG42329 +	chr2L	1223879	intron	CG42329 +	chr2L	1227629	intron	CG42329 +	chr2L_21_1220001	chr2L_1220001	RC1_1-HE
33	chr2L	1301752	1301784	chr2L	1302290	1302324	gypsy	8	540	0.0	6.0	3.0	2.0	572	chr2L	1301752	intergenic	not near genes	chr2L	1302038	intergenic	not near genes	chr2L	1302324	intergenic	not near genes	chr2L_8_1300001	chr2L_1300001	RC1_1-HE
36	chr2L	1570687	1570719	chr2L	1573560	1573592	F-element	15	2873	8.0	8.0	8.0	1.7	2905	chr2L	1570687	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573592	intron	haf +	chr2L_15_1570001	chr2L_1570001	RC1_1-HE
39	chr2L	1678979	1679009	chr2L	1686445	1686475	blood	21	7465	5.0	9.5	7.2	2.6	7496	chr2L	1678979	intron	chinmo +	chr2L	1682727	intron	chinmo +	chr2L	1686475	intron	chinmo +	chr2L_21_1680001	chr2L_1680001	RC1_1-HE
40	chr2L	1711353	1711389	chr2L	1711678	1711693	mdg3	15	321	2.5	1.5	2.0	5.0	340	chr2L	1711353	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711523	3` UTR	frtz -	chr2L	1711693	3` UTR	frtz -	chr2L_15_1710001	chr2L_1710001	RC1_1-HE
54	chr2L	2100384	2100404	chr2L	2109524	2109556	roo	12	9150	6.0	4.0	5.0	2.0	9172	chr2L	2100384	intron	dpr3 -	chr2L	2104970	intron	dpr3 -	chr2L	2109556	intron	dpr3 -	chr2L_12_2100001	chr2L_2100001	RC1_1-HE
56	chr2L	2112132	2112146	chr2L	2119795	2119809	opus	6	7663	1.0	3.0	2.0	2.0	7677	chr2L	2112132	intergenic	not near genes	chr2L	2115970	intergenic	not near genes	chr2L	2119809	intergenic	not near genes	chr2L_6_2115001	chr2L_2115001	RC1_1-HE
64	chr2L	2294046	2294071	chr2L	2299252	2299277	copia	10	5204	3.5	3.5	3.5	2.2	5231	chr2L	2294046	intergenic	not near genes	chr2L	2296662	intergenic	not near genes	chr2L	2299277	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	RC1_1-HE
76	chr2L	2661220	2661230	chr2L	2663033	2663069	I-element	4	1828	3.5	6.5	5.0	0.7	1849	chr2L	2661220	intergenic	not near genes	chr2L	2662144	intergenic	not near genes	chr2L	2663069	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RC1_1-HE
79	chr2L	2772609	2772628	chr2L	2779194	2779213	297	5	6585	3.0	4.0	3.5	1.1	6604	chr2L	2772609	3` UTR	Syt1 -	chr2L	2775911	intron	Syt1 -	chr2L	2779213	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RC1_1-HE
88	chr2L	2933300	2933326	chr2L	2935478	2935501	pogo	15	2177	7.5	6.5	7.0	1.9	2201	chr2L	2933300	intron	lilli +	chr2L	2934400	intron	lilli +	chr2L	2935501	intron	lilli +	chr2L_15_2930001	chr2L_2930001	RC1_1-HE
93	chr2L	3073030	3073054	chr2L	3078234	3078258	copia	6	5204	3.0	3.0	3.0	1.5	5228	chr2L	3073030	intron	toc -	chr2L	3075644	intron	toc -	chr2L	3078258	intron	toc -	chr2L_6_3075001	chr2L_3075001	RC1_1-HE
101	chr2L	3388597	3388629	chr2L	3388839	3388871	pogo	10	242	2.0	2.0	2.0	3.3	274	chr2L	3388597	intergenic	CG42460 -	chr2L	3388734	intergenic	CG42460 -	chr2L	3388871	intergenic	CG42460 -,CR44791 +	chr2L_10_3385001	chr2L_3385001	RC1_1-HE
110	chr2L	3649785	3649808	chr2L	3654988	3655011	copia	7	5203	0.5	2.0	1.2	3.2	5226	chr2L	3649785	intron	for -	chr2L	3652398	intron	for -	chr2L	3655011	intron	for -	chr2L_7_3650001	chr2L_3650001	RC1_1-HE
118	chr2L	4066039	4066064	chr2L	4068865	4068890	Juan	10	2826	8.0	4.5	6.2	1.4	2851	chr2L	4066039	intron	ed +	chr2L	4067464	intron	ed +	chr2L	4068890	intron	ed +	chr2L_10_4065001	chr2L_4065001	RC1_1-HE
125	chr2L	4181295	4181305	chr2L	4183928	4183938	Burdock	4	2633	2.0	4.0	3.0	1.0	2643	chr2L	4181295	intergenic	not near genes	chr2L	4182616	intergenic	not near genes	chr2L	4183938	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RC1_1-HE
132	chr2L	4601701	4601736	chr2L	4609143	4609178	mdg1	9	7441	4.0	2.5	3.2	2.1	7477	chr2L	4601701	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609178	intron	dp -	chr2L_9_4605001	chr2L_4605001	RC1_1-HE
156	chr2L	5827710	5827740	chr2L	5836719	5836749	roo	9	9009	1.0	3.0	2.0	3.0	9039	chr2L	5827710	intron	TrissinR +	chr2L	5832230	intron	TrissinR +	chr2L	5836749	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	RC1_1-HE
174	chr2L	6363148	6363174	chr2L	6366071	6366097	Burdock	11	2923	7.0	2.5	4.8	1.9	2949	chr2L	6363148	intergenic	not near genes	chr2L	6364622	intergenic	not near genes	chr2L	6366097	intergenic	not near genes	chr2L_11_6360001	chr2L_6360001	RC1_1-HE
175	chr2L	6426853	6426885	chr2L	6445114	6445146	roo	8	18261	2.5	4.0	3.2	1.9	18293	chr2L	6426853	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445146	exon	CG9527 -	chr2L_8_6435001	chr2L_6435001	RC1_1-HE
190	chr2L	6876777	6876809	chr2L	6882969	6882993	diver	9	6191	3.5	2.5	3.0	2.2	6216	chr2L	6876777	intron	Nlg2 +	chr2L	6879885	intron	Nlg2 +	chr2L	6882993	intron	Nlg2 +	chr2L_9_6875001	chr2L_6875001	RC1_1-HE
200	chr2L	7343326	7343330	chr2L	7350442	7350447	roo	4	7117	14.0	4.5	9.2	0.4	7121	chr2L	7343326	intron	Wnt6 +	chr2L	7346886	intron	Wnt6 +	chr2L	7350447	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RC1_1-HE
201	chr2L	7343334	7343345	chr2L	7350441	7350462	roo	8	7115	8.0	4.5	6.2	1.1	7128	chr2L	7343334	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350462	intron	Wnt6 +	chr2L_8_7345001	chr2L_7345001	RC1_1-HE
202	chr2L	7343353	7343359	chr2L	7350439	7350475	roo	4	7109	4.0	4.0	4.0	0.8	7122	chr2L	7343353	intron	Wnt6 +	chr2L	7346914	intron	Wnt6 +	chr2L	7350475	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RC1_1-HE
218	chr2L	7977088	7977112	chr2L	7984052	7984087	297	7	6970	1.5	1.5	1.5	2.8	6999	chr2L	7977088	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984087	intron,5` UTR	Snoo -,CG7231 +	chr2L_7_7980001	chr2L_7980001	RC1_1-HE
229	chr2L	8452420	8452452	chr2L	8461592	8461624	roo	14	9172	3.0	5.5	4.2	2.7	9204	chr2L	8452420	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461624	intron	fu12 -	chr2L_14_8455001	chr2L_8455001	RC1_1-HE
236	chr2L	8723123	8723146	chr2L	8731501	8731524	Tirant	12	8378	2.5	5.0	3.8	2.5	8401	chr2L	8723123	intron	raw -	chr2L	8727324	intron	raw -	chr2L	8731524	intron	raw -	chr2L_12_8725001	chr2L_8725001	RC1_1-HE
241	chr2L	9000276	9000313	chr2L	9007787	9007824	roo	6	7511	3.5	1.5	2.5	1.7	7548	chr2L	9000276	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007824	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	RC1_1-HE
256	chr2L	9393496	9393529	chr2L	9396464	9396497	jockey	19	2967	4.0	4.0	4.0	3.8	3001	chr2L	9393496	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396497	intron	Shawl -	chr2L_19_9390001	chr2L_9390001	RC1_1-HE
272	chr2L	9973726	9973759	chr2L	9980846	9980879	HMS-Beagle	12	7120	1.5	5.0	3.2	2.9	7153	chr2L	9973726	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980879	intergenic	not near genes	chr2L_12_9975001	chr2L_9975001	RC1_1-HE
277	chr2L	10156319	10156355	chr2L	10163790	10163826	blood	12	7471	5.5	2.0	3.8	2.5	7507	chr2L	10156319	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163826	intron	CG44153 -	chr2L_12_10160001	chr2L_10160001	RC1_1-HE
287	chr2L	10592840	10592873	chr2L	10600503	10600535	opus	16	7663	4.5	5.0	4.8	2.8	7695	chr2L	10592840	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600535	intron	Trim9 +	chr2L_16_10595001	chr2L_10595001	RC1_1-HE
297	chr2L	10946947	10946975	chr2L	10956163	10956191	roo	13	9216	1.5	4.5	3.0	3.2	9244	chr2L	10946947	intron	dpr2 -	chr2L	10951569	intron	dpr2 -	chr2L	10956191	intron	dpr2 -	chr2L_13_10950001	chr2L_10950001	RC1_1-HE
314	chr2L	11540583	11540611	chr2L	11547986	11548014	Tabor	10	7403	2.0	7.0	4.5	1.8	7431	chr2L	11540583	intergenic	not near genes	chr2L	11544298	intergenic	not near genes	chr2L	11548014	intergenic	not near genes	chr2L_10_11540001	chr2L_11540001	RC1_1-HE
315	chr2L	11563633	11563652	chr2L	11568838	11568857	copia	10	5205	8.0	2.0	5.0	1.7	5224	chr2L	11563633	intergenic	not near genes	chr2L	11566245	intergenic	not near genes	chr2L	11568857	intergenic	not near genes	chr2L_10_11565001	chr2L_11565001	RC1_1-HE
321	chr2L	11713508	11713538	chr2L	11720977	11721006	blood	15	7467	3.0	5.0	4.0	3.0	7498	chr2L	11713508	intergenic	not near genes	chr2L	11717257	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_15_11715001	chr2L_11715001	RC1_1-HE
333	chr2L	12067335	12067361	chr2L	12074388	12074414	297	7	7053	4.0	5.0	4.5	1.3	7079	chr2L	12067335	intergenic	not near genes	chr2L	12070874	intergenic	not near genes	chr2L	12074414	intergenic	not near genes	chr2L_7_12070001	chr2L_12070001	RC1_1-HE
352	chr2L	12558317	12558352	chr2L	12565447	12565482	HMS-Beagle	11	7130	5.0	5.0	5.0	1.8	7165	chr2L	12558317	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_11_12560001	chr2L_12560001	RC1_1-HE
357	chr2L	12731053	12731089	chr2L	12735821	12735857	F-element	12	4768	3.5	3.0	3.2	2.9	4804	chr2L	12731053	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735857	intron	MRP +	chr2L_12_12730001	chr2L_12730001	RC1_1-HE
359	chr2L	12781794	12781813	chr2L	12789245	12789264	Quasimodo	9	7451	14.0	5.0	9.5	0.9	7470	chr2L	12781794	intergenic	not near genes	chr2L	12785529	intergenic	not near genes	chr2L	12789264	intergenic	not near genes	chr2L_9_12785001	chr2L_12785001	RC1_1-HE
360	chr2L	12791604	12791628	chr2L	12795280	12795304	F-element	10	3674	7.0	5.5	6.2	1.4	3700	chr2L	12791604	intergenic	not near genes	chr2L	12793454	intergenic	not near genes	chr2L	12795304	intergenic	not near genes	chr2L_10_12790001	chr2L_12790001	RC1_1-HE
362	chr2L	12861695	12861729	chr2L	12863163	12863197	hobo	16	1468	5.5	2.0	3.8	3.3	1502	chr2L	12861695	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863197	intergenic	not near genes	chr2L_16_12860001	chr2L_12860001	RC1_1-HE
363	chr2L	12894019	12894035	chr2L	12895487	12895503	hobo	11	1467	2.0	7.5	4.8	1.9	1484	chr2L	12894019	intergenic	not near genes	chr2L	12894761	intergenic	not near genes	chr2L	12895503	intergenic	not near genes	chr2L_11_12890001	chr2L_12890001	RC1_1-HE
364	chr2L	12894037	12894053	chr2L	12895484	12895521	hobo	7	1465	1.5	6.5	4.0	1.4	1484	chr2L	12894037	intergenic	not near genes	chr2L	12894779	intergenic	not near genes	chr2L	12895521	intergenic	not near genes	chr2L_7_12890001	chr2L_12890001	RC1_1-HE
365	chr2L	12933847	12933876	chr2L	12941315	12941344	blood	12	7468	2.5	3.0	2.8	3.2	7497	chr2L	12933847	intergenic	not near genes	chr2L	12937596	intergenic	not near genes	chr2L	12941344	intergenic	not near genes	chr2L_12_12935001	chr2L_12935001	RC1_1-HE
367	chr2L	13036240	13036271	chr2L	13036483	13036514	X-element	9	243	3.5	3.5	3.5	2.0	274	chr2L	13036240	intron	CG9932 -	chr2L	13036377	intron	CG9932 -	chr2L	13036514	intron	CG9932 -	chr2L_9_13035001	chr2L_13035001	RC1_1-HE
375	chr2L	13241957	13241963	chr2L	13244342	13244348	BS	5	2385	0.5	2.5	1.5	2.0	2391	chr2L	13241957	5` UTR	CR45330 +	chr2L	13243152	intron	CR45330 +	chr2L	13244348	5` UTR	CR45330 +	chr2L_5_13240001	chr2L_13240001	RC1_1-HE
379	chr2L	13405646	13405683	chr2L	13410444	13410481	Doc	8	4798	1.5	2.5	2.0	2.7	4835	chr2L	13405646	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410481	intron	CG7110 +	chr2L_8_13405001	chr2L_13405001	RC1_1-HE
381	chr2L	13449467	13449494	chr2L	13456904	13456931	Quasimodo	10	7437	6.5	6.0	6.2	1.4	7464	chr2L	13449467	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453199	intron	CG42784 +	chr2L	13456931	intron	CG42784 +	chr2L_10_13450001	chr2L_13450001	RC1_1-HE
382	chr2L	13481446	13481474	chr2L	13482054	13482082	jockey	18	608	9.0	7.5	8.2	2.0	636	chr2L	13481446	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482082	intron	CG42784 +	chr2L_18_13480001	chr2L_13480001	RC1_1-HE
384	chr2L	13560394	13560421	chr2L	13565216	13565243	F-element	15	4822	7.0	4.0	5.5	2.3	4849	chr2L	13560394	intron	kuz +	chr2L	13562818	intron	kuz +	chr2L	13565243	intron	kuz +	chr2L_15_13560001	chr2L_13560001	RC1_1-HE
388	chr2L	13761810	13761833	chr2L	13762922	13762945	Doc	9	1112	4.0	2.5	3.2	2.1	1135	chr2L	13761810	intron	TM9SF4 +	chr2L	13762378	intron	TM9SF4 +	chr2L	13762945	intron	TM9SF4 +	chr2L_9_13760001	chr2L_13760001	RC1_1-HE
390	chr2L	13853081	13853115	chr2L	13862232	13862266	roo	19	9151	5.5	4.0	4.8	3.3	9185	chr2L	13853081	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_19_13855001	chr2L_13855001	RC1_1-HE
408	chr2L	14803878	14803912	chr2L	14809082	14809116	copia	13	5204	3.0	4.5	3.8	2.7	5238	chr2L	14803878	intergenic	not near genes	chr2L	14806497	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_13_14805001	chr2L_14805001	RC1_1-HE
411	chr2L	14889950	14889988	chr2L	14890376	14890414	jockey	24	426	3.5	3.5	3.5	5.3	464	chr2L	14889950	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890414	intergenic	not near genes	chr2L_24_14890001	chr2L_14890001	RC1_1-HE
421	chr2L	15446050	15446083	chr2L	15453520	15453553	blood	15	7470	3.5	2.0	2.8	3.9	7503	chr2L	15446050	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453553	intergenic	not near genes	chr2L_15_15445001	chr2L_15445001	RC1_1-HE
427	chr2L	15586410	15586438	chr2L	15593460	15593491	297	13	7053	4.0	5.0	4.5	2.4	7081	chr2L	15586410	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593491	intergenic	not near genes	chr2L_13_15585001	chr2L_15585001	RC1_1-HE
440	chr2L	15956025	15956057	chr2L	15957492	15957525	hobo	5	1468	6.0	4.5	5.2	0.8	1500	chr2L	15956025	intron	beat-Ib -	chr2L	15956775	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_5_15955001	chr2L_15955001	RC1_1-HE
445	chr2L	16141162	16141191	chr2L	16146370	16146399	copia	9	5208	7.0	3.5	5.2	1.5	5237	chr2L	16141162	intergenic	not near genes	chr2L	16143780	intergenic	not near genes	chr2L	16146399	intergenic	not near genes	chr2L_9_16140001	chr2L_16140001	RC1_1-HE
446	chr2L	16153741	16153759	chr2L	16160810	16160828	297	7	7069	4.5	2.0	3.2	1.7	7087	chr2L	16153741	intergenic	not near genes	chr2L	16157284	intergenic	not near genes	chr2L	16160828	intergenic	not near genes	chr2L_7_16155001	chr2L_16155001	RC1_1-HE
452	chr2L	16280258	16280276	chr2L	16281426	16281445	1360	10	1169	4.5	3.0	3.8	2.1	1187	chr2L	16280258	intron	crp -	chr2L	16280852	intron	crp -	chr2L	16281445	intron	crp -	chr2L_10_16280001	chr2L_16280001	RC1_1-HE
453	chr2L	16280279	16280288	chr2L	16281419	16281457	1360	7	1161	2.5	3.0	2.8	1.8	1178	chr2L	16280279	intron	crp -	chr2L	16280868	intron	crp -	chr2L	16281457	intron	crp -	chr2L_7_16280001	chr2L_16280001	RC1_1-HE
469	chr2L	16852791	16852805	chr2L	16859927	16859948	Doc4-element	4	7141	9.5	3.0	6.2	0.6	7157	chr2L	16852791	intergenic	CG31810 -	chr2L	16856370	intron	CG31809 -	chr2L	16859948	intergenic	CG6012 -	chr2L_4_16855001	chr2L_16855001	RC1_1-HE
472	chr2L	16958104	16958136	chr2L	16962893	16962925	Doc	22	4789	4.0	4.0	4.0	4.4	4821	chr2L	16958104	intergenic	not near genes	chr2L	16960514	intergenic	not near genes	chr2L	16962925	intergenic	not near genes	chr2L_22_16960001	chr2L_16960001	RC1_1-HE
487	chr2L	17167567	17167595	chr2L	17167809	17167837	pogo	11	242	2.5	4.5	3.5	2.4	270	chr2L	17167567	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167702	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167837	intron,intron	CG34106 +,beat-IIIa +	chr2L_11_17165001	chr2L_17165001	RC1_1-HE
488	chr2L	17199160	17199189	chr2L	17200628	17200657	hobo	9	1468	5.0	1.5	3.2	2.1	1497	chr2L	17199160	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200657	intron	beat-IIIc -	chr2L_9_17195001	chr2L_17195001	RC1_1-HE
491	chr2L	17273195	17273226	chr2L	17277979	17278010	F-element	14	4784	2.5	3.0	2.8	3.7	4815	chr2L	17273195	intergenic	not near genes	chr2L	17275602	intergenic	not near genes	chr2L	17278010	intergenic	not near genes	chr2L_14_17275001	chr2L_17275001	RC1_1-HE
498	chr2L	17432018	17432048	chr2L	17432126	17432156	1360	13	108	0.0	1.0	0.5	8.7	138	chr2L	17432018	intron	Dif -	chr2L	17432087	intron	Dif -	chr2L	17432156	intron	Dif -	chr2L_13_17430001	chr2L_17430001	RC1_1-HE
504	chr2L	17687515	17687521	chr2L	17692261	17692267	F-element	5	4746	5.5	5.5	5.5	0.8	4752	chr2L	17687515	intron	CadN -	chr2L	17689891	intron	CadN -	chr2L	17692267	intron	CadN -	chr2L_5_17685001	chr2L_17685001	RC1_1-HE
507	chr2L	17727867	17727882	chr2L	17729335	17729342	hobo	7	1467	2.5	13.5	8.0	0.8	1475	chr2L	17727867	intron	CadN -	chr2L	17728604	intron	CadN -	chr2L	17729342	intron	CadN -	chr2L_7_17725001	chr2L_17725001	RC1_1-HE
510	chr2L	17819921	17819943	chr2L	17825126	17825147	copia	9	5205	5.0	3.0	4.0	1.8	5226	chr2L	17819921	intron	CadN2 -	chr2L	17822534	intron	CadN2 -	chr2L	17825147	intron	CadN2 -	chr2L_9_17820001	chr2L_17820001	RC1_1-HE
515	chr2L	17911956	17911988	chr2L	17914135	17914167	pogo	10	2175	2.0	9.0	5.5	1.5	2211	chr2L	17911956	intergenic	not near genes	chr2L	17913062	intergenic	not near genes	chr2L	17914167	intergenic	CG43271 -	chr2L_10_17910001	chr2L_17910001	RC1_1-HE
519	chr2L	17951950	17951976	chr2L	17953418	17953444	hobo	10	1468	6.0	4.5	5.2	1.6	1494	chr2L	17951950	intergenic	CR44398 -,CR44397 -	chr2L	17952697	intergenic	not near genes	chr2L	17953444	intergenic	not near genes	chr2L_10_17950001	chr2L_17950001	RC1_1-HE
520	chr2L	18051874	18051899	chr2L	18061022	18061047	roo	16	9147	4.0	3.0	3.5	3.6	9173	chr2L	18051874	intron	rdo +	chr2L	18056460	intron	rdo +	chr2L	18061047	intron	rdo +	chr2L_16_18055001	chr2L_18055001	RC1_1-HE
534	chr2L	18408026	18408049	chr2L	18412811	18412834	Doc	10	4785	5.0	0.0	2.5	2.9	4808	chr2L	18408026	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412834	intergenic	not near genes	chr2L_10_18410001	chr2L_18410001	RC1_1-HE
551	chr2L	19147378	19147403	chr2L	19154414	19154439	297	11	7035	4.0	11.5	7.8	1.2	7061	chr2L	19147378	intron	brat +	chr2L	19150908	intron	brat +	chr2L	19154439	intron	brat +	chr2L_11_19150001	chr2L_19150001	RC1_1-HE
557	chr2L	19345024	19345050	chr2L	19357222	19357260	blood	15	12208	3.5	5.0	4.2	2.9	12236	chr2L	19345024	intron	dnt -	chr2L	19351142	intron	dnt -	chr2L	19357260	intron	dnt -	chr2L_15_19350001	chr2L_19350001	RC1_1-HE
569	chr2L	19620092	19620132	chr2L	19621082	19621122	jockey	26	989	6.5	5.0	5.8	3.8	1030	chr2L	19620092	intron	Lar +	chr2L	19620607	intron	Lar +	chr2L	19621122	intron	Lar +	chr2L_26_19620001	chr2L_19620001	RC1_1-HE
570	chr2L	19652567	19652604	chr2L	19674004	19674041	opus	21	21437	4.5	6.0	5.2	3.4	21474	chr2L	19652567	intron	Lar +	chr2L	19663304	intron	Lar +	chr2L	19674041	intron	Lar +	chr2L_21_19660001	chr2L_19660001	RC1_1-HE
571	chr2L	19703537	19703570	chr2L	19712674	19712706	roo	26	9137	11.5	5.0	8.2	2.8	9169	chr2L	19703537	intron	Lar +	chr2L	19708122	intron	Lar +	chr2L	19712706	intron	Lar +	chr2L_26_19705001	chr2L_19705001	RC1_1-HE
572	chr2L	19737354	19737389	chr2L	19740821	19740859	1360	13	3470	3.0	1.5	2.2	4.1	3505	chr2L	19737354	intergenic	Nf-YB +	chr2L	19739106	intergenic	not near genes	chr2L	19740859	intergenic	not near genes	chr2L_13_19735001	chr2L_19735001	RC1_1-HE
573	chr2L	19762809	19762840	chr2L	19763052	19763083	pogo	6	243	2.0	4.0	3.0	1.5	274	chr2L	19762809	5` UTR	fbp -	chr2L	19762946	intron	fbp -	chr2L	19763083	intron	fbp -	chr2L_6_19760001	chr2L_19760001	RC1_1-HE
579	chr2L	20005872	20005905	chr2L	20010949	20010982	flea	14	5077	3.5	6.5	5.0	2.3	5110	chr2L	20005872	intron	CG43861 -	chr2L	20008427	intron	CG43861 -	chr2L	20010982	intron	CG43861 -	chr2L_14_20005001	chr2L_20005001	RC1_1-HE
584	chr2L	20272110	20272145	chr2L	20282822	20282857	copia	11	10712	3.0	3.5	3.2	2.6	10747	chr2L	20272110	intergenic	not near genes	chr2L	20277484	intergenic	not near genes	chr2L	20282857	intergenic	not near genes	chr2L_11_20275001	chr2L_20275001	RC1_1-HE
587	chr2L	20303161	20303191	chr2L	20310630	20310660	blood	16	7469	0.0	2.0	1.0	8.0	7499	chr2L	20303161	intergenic	not near genes	chr2L	20306910	intergenic	not near genes	chr2L	20310660	intergenic	not near genes	chr2L_16_20305001	chr2L_20305001	RC1_1-HE
594	chr2L	20372218	20372257	chr2L	20372469	20372499	pogo	7	247	1.0	4.0	2.5	2.0	281	chr2L	20372218	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372499	exon	Ugt37a1 -	chr2L_7_20370001	chr2L_20370001	RC1_1-HE
599	chr2L	20568661	20568684	chr2L	20569052	20569075	X-element	7	391	2.5	4.0	3.2	1.7	414	chr2L	20568661	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569075	intron	CR45347 +	chr2L_7_20565001	chr2L_20565001	RC1_1-HE
600	chr2L	20576217	20576249	chr2L	20583685	20583718	blood	11	7468	5.0	6.5	5.8	1.6	7501	chr2L	20576217	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583718	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	RC1_1-HE
606	chr2L	20835806	20835839	chr2L	20836524	20836557	Quasimodo	14	718	4.5	7.0	5.8	2.1	751	chr2L	20835806	5` UTR	Oseg5 -	chr2L	20836182	intergenic	Oseg5 -,Spn38F -	chr2L	20836557	intergenic	Spn38F -	chr2L_14_20835001	chr2L_20835001	RC1_1-HE
610	chr2L	20976646	20976681	chr2L	20981462	20981497	X-element	9	4814	3.0	3.0	3.0	2.2	4851	chr2L	20976646	intron	CG42238 -	chr2L	20979072	intron	CG42238 -	chr2L	20981497	intron	CG42238 -	chr2L_9_20975001	chr2L_20975001	RC1_1-HE
613	chr2L	21020272	21020311	chr2L	21023950	21023989	NOF	11	3678	7.5	4.0	5.8	1.6	3717	chr2L	21020272	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023989	intron	CG42238 -	chr2L_11_21020001	chr2L_21020001	RC1_1-HE
615	chr2L	21041134	21041166	chr2L	21049396	21049417	Tirant	13	8258	3.5	4.0	3.8	2.7	8283	chr2L	21041134	intron	CG42238 -	chr2L	21045276	intron	CG42238 -	chr2L	21049417	intron	CG42238 -	chr2L_13_21045001	chr2L_21045001	RC1_1-HE
619	chr2L	21347548	21347576	chr2L	21355021	21355049	blood	7	7473	2.0	3.0	2.5	2.0	7501	chr2L	21347548	intron	Tsp39D +	chr2L	21351298	intron	Tsp39D +	chr2L	21355049	intron	Tsp39D +	chr2L_7_21350001	chr2L_21350001	RC1_1-HE
620	chr2L	21597033	21597063	chr2L	21604778	21604808	roo	21	7745	8.0	9.0	8.5	2.2	7775	chr2L	21597033	intergenic	not near genes	chr2L	21600920	intergenic	not near genes	chr2L	21604808	intergenic	not near genes	chr2L_21_21600001	chr2L_21600001	RC1_1-HE
622	chr2L	21653197	21653224	chr2L	21656502	21656529	invader4	4	3305	2.5	5.5	4.0	0.8	3332	chr2L	21653197	intergenic	not near genes	chr2L	21654863	intergenic	not near genes	chr2L	21656529	intergenic	not near genes	chr2L_4_21650001	chr2L_21650001	RC1_1-HE
623	chr2L	21691833	21691856	chr2L	21698304	21698327	Burdock	8	6471	3.5	6.0	4.8	1.4	6494	chr2L	21691833	intron	CG31619 +	chr2L	21695080	intron	CG31619 +	chr2L	21698327	intron	CG31619 +	chr2L_8_21695001	chr2L_21695001	RC1_1-HE
632	chr2L	21981679	21981715	chr2L	21990845	21990881	roo	17	9166	2.0	5.0	3.5	3.8	9202	chr2L	21981679	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990881	exon	CG2528 -	chr2L_17_21985001	chr2L_21985001	RC1_1-HE
637	chr2L	22258622	22258641	chr2L	22260747	22260766	G6	6	2125	3.0	4.0	3.5	1.3	2144	chr2L	22258622	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260766	intergenic	not near genes	chr2L_6_22255001	chr2L_22255001	RC1_1-HE
638	chr2L	22548930	22548945	chr2L	22550156	22550171	1360	7	1226	0.5	7.5	4.0	1.4	1241	chr2L	22548930	intergenic	CG17490 +	chr2L	22549550	intergenic	not near genes	chr2L	22550171	intergenic	CG17493 +	chr2L_7_22545001	chr2L_22545001	RC1_1-HE
640	chr2L	22679803	22679826	chr2L	22684576	22684599	F-element	9	4773	1.0	3.0	2.0	3.0	4796	chr2L	22679803	intron	CG40006 -	chr2L	22682201	intron	CG40006 -	chr2L	22684599	intron	CG40006 -	chr2L_9_22680001	chr2L_22680001	RC1_1-HE
642	chr2L	22776424	22776437	chr2L	22778214	22778227	S-element	5	1790	2.5	3.0	2.8	1.3	1803	chr2L	22776424	intergenic	not near genes	chr2L	22777326	intergenic	not near genes	chr2L	22778227	intergenic	not near genes	chr2L_5_22775001	chr2L_22775001	RC1_1-HE
643	chr2R	469967	469979	chr2R	473208	473221	F-element	4	3242	2.5	9.5	6.0	0.6	3254	chr2R	469967	intergenic	not near genes	chr2R	471594	intergenic	not near genes	chr2R	473221	intergenic	not near genes	chr2R_4_470001	chr2R_470001	RC1_1-HE
644	chr2R	552769	552788	chr2R	553987	553990	1360	7	1216	4.0	6.0	5.0	1.2	1221	chr2R	552769	intron	CG40378 +	chr2R	553380	intron	CG40378 +	chr2R	553990	intron	CG40378 +	chr2R_7_550001	chr2R_550001	RC1_1-HE
647	chr2R	2498981	2499015	chr2R	2508129	2508163	roo	7	9148	2.5	3.5	3.0	1.8	9182	chr2R	2498981	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508163	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	RC1_1-HE
651	chr2R	3532618	3532644	chr2R	3536062	3536088	Doc	4	3444	1.0	2.0	1.5	1.6	3470	chr2R	3532618	intergenic	not near genes	chr2R	3534353	intergenic	not near genes	chr2R	3536088	intergenic	not near genes	chr2R_4_3530001	chr2R_3530001	RC1_1-HE
659	chr2R	4838872	4838883	chr2R	4840396	4840407	transib2	6	1524	2.5	5.5	4.0	1.2	1535	chr2R	4838872	intergenic	not near genes	chr2R	4839640	intergenic	not near genes	chr2R	4840407	intergenic	not near genes	chr2R_6_4835001	chr2R_4835001	RC1_1-HE
666	chr2R	5417992	5418027	chr2R	5420625	5420660	Burdock	8	2630	3.0	3.5	3.2	1.9	2668	chr2R	5417992	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420660	intron	laccase2 +	chr2R_8_5415001	chr2R_5415001	RC1_1-HE
673	chr2R	5543197	5543223	chr2R	5547282	5547308	invader1	9	4085	0.0	5.0	2.5	2.6	4111	chr2R	5543197	intron	CG30438 +	chr2R	5545252	intron	CG30438 +	chr2R	5547308	intron	CG30438 +	chr2R_9_5545001	chr2R_5545001	RC1_1-HE
678	chr2R	5869276	5869309	chr2R	5874353	5874386	flea	13	5077	5.5	4.0	4.8	2.2	5110	chr2R	5869276	intergenic	not near genes	chr2R	5871831	intergenic	not near genes	chr2R	5874386	intergenic	not near genes	chr2R_13_5870001	chr2R_5870001	RC1_1-HE
680	chr2R	5902154	5902190	chr2R	5909714	5909725	17.6	16	7558	5.0	6.5	5.8	2.4	7571	chr2R	5902154	intron	CG43366 +	chr2R	5905940	intron	CG43366 +	chr2R	5909725	intron	CG43366 +	chr2R_16_5905001	chr2R_5905001	RC1_1-HE
689	chr2R	6096714	6096751	chr2R	6101913	6101950	BS	10	5198	7.5	7.5	7.5	1.2	5236	chr2R	6096714	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101950	intron	EcR -	chr2R_10_6095001	chr2R_6095001	RC1_1-HE
696	chr2R	6579770	6579804	chr2R	6584857	6584891	flea	13	5087	5.0	4.0	4.5	2.4	5121	chr2R	6579770	intron	jing +	chr2R	6582330	intron	jing +	chr2R	6584891	intron	jing +	chr2R_13_6580001	chr2R_6580001	RC1_1-HE
698	chr2R	6622142	6622175	chr2R	6622615	6622648	invader1	13	473	6.0	4.5	5.2	2.1	506	chr2R	6622142	intergenic	not near genes	chr2R	6622395	intergenic	not near genes	chr2R	6622648	intergenic	not near genes	chr2R_13_6620001	chr2R_6620001	RC1_1-HE
700	chr2R	6664181	6664200	chr2R	6665972	6665991	S-element	5	1791	2.5	3.0	2.8	1.3	1810	chr2R	6664181	intron,3` UTR	Adf1 +,CR45128 -	chr2R	6665086	intron	Adf1 +	chr2R	6665991	intron	Adf1 +	chr2R_5_6665001	chr2R_6665001	RC1_1-HE
708	chr2R	7139945	7139950	chr2R	7141416	7141443	hopper2	4	1488	5.0	3.5	4.2	0.8	1498	chr2R	7139945	intergenic	not near genes	chr2R	7140694	intergenic	not near genes	chr2R	7141443	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RC1_1-HE
711	chr2R	7196562	7196596	chr2R	7201338	7201372	F-element	9	4776	1.5	5.5	3.5	2.0	4810	chr2R	7196562	intron	pk +	chr2R	7198967	intron	pk +	chr2R	7201372	intron	pk +	chr2R_9_7195001	chr2R_7195001	RC1_1-HE
712	chr2R	7209849	7209871	chr2R	7217598	7217620	roo	9	7749	5.0	8.0	6.5	1.2	7771	chr2R	7209849	intron	pk +	chr2R	7213734	intron	pk +	chr2R	7217620	intron	pk +	chr2R_9_7210001	chr2R_7210001	RC1_1-HE
713	chr2R	7235823	7235851	chr2R	7240916	7240944	jockey	10	5091	2.0	1.0	1.5	4.0	5121	chr2R	7235823	intergenic	not near genes	chr2R	7238384	intergenic	not near genes	chr2R	7240944	intergenic	not near genes	chr2R_10_7235001	chr2R_7235001	RC1_1-HE
717	chr2R	7434892	7434914	chr2R	7439194	7439216	Juan	4	4302	3.5	3.5	3.5	0.9	4324	chr2R	7434892	intergenic	so +	chr2R	7437054	intergenic	not near genes	chr2R	7439216	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RC1_1-HE
723	chr2R	7608406	7608428	chr2R	7613610	7613632	I-element	17	5204	3.0	0.0	1.5	6.8	5226	chr2R	7608406	intron	CG1358 -	chr2R	7611019	intron	CG1358 -	chr2R	7613632	intron	CG1358 -	chr2R_17_7610001	chr2R_7610001	RC1_1-HE
729	chr2R	7815684	7815704	chr2R	7822154	7822174	Burdock	4	6470	0.5	4.0	2.2	1.2	6490	chr2R	7815684	intergenic	CG1882 +	chr2R	7818929	intergenic	not near genes	chr2R	7822174	3` UTR	cathD -	chr2R_4_7815001	chr2R_7815001	RC1_1-HE
731	chr2R	7869189	7869215	chr2R	7873976	7874002	Doc	10	4787	4.0	4.5	4.2	1.9	4813	chr2R	7869189	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_10_7870001	chr2R_7870001	RC1_1-HE
743	chr2R	8330861	8330889	chr2R	8331348	8331376	roo	16	487	3.5	6.5	5.0	2.7	515	chr2R	8330861	intron	pdm3 +	chr2R	8331118	intron	pdm3 +	chr2R	8331376	intron	pdm3 +	chr2R_16_8330001	chr2R_8330001	RC1_1-HE
746	chr2R	8398213	8398240	chr2R	8402995	8403022	Doc	6	4782	3.5	4.0	3.8	1.2	4809	chr2R	8398213	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403022	intron	CG2121 -	chr2R_6_8400001	chr2R_8400001	RC1_1-HE
762	chr2R	8722764	8722791	chr2R	8723006	8723033	pogo	10	242	4.0	5.5	4.8	1.7	269	chr2R	8722764	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723033	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	RC1_1-HE
763	chr2R	8777930	8777944	chr2R	8784135	8784149	diver	7	6205	1.0	4.5	2.8	1.8	6219	chr2R	8777930	intergenic	not near genes	chr2R	8781040	intergenic	not near genes	chr2R	8784149	intergenic	not near genes	chr2R_7_8780001	chr2R_8780001	RC1_1-HE
771	chr2R	9212692	9212724	chr2R	9213179	9213211	roo	14	487	7.0	4.5	5.8	2.1	519	chr2R	9212692	intergenic	CR45309 +	chr2R	9212952	intergenic	CR45309 +	chr2R	9213211	5` UTR	CR45309 +	chr2R_14_9210001	chr2R_9210001	RC1_1-HE
778	chr2R	9480073	9480107	chr2R	9490605	9490639	roo	11	10532	2.0	7.5	4.8	1.9	10566	chr2R	9480073	intergenic	not near genes	chr2R	9485356	intergenic	not near genes	chr2R	9490639	intergenic	not near genes	chr2R_11_9485001	chr2R_9485001	RC1_1-HE
787	chr2R	9726609	9726643	chr2R	9734161	9734195	17.6	10	7552	6.5	2.0	4.2	1.9	7586	chr2R	9726609	intron	sqa -	chr2R	9730402	intron	sqa -	chr2R	9734195	intron	sqa -	chr2R_10_9730001	chr2R_9730001	RC1_1-HE
792	chr2R	9945441	9945468	chr2R	9945638	9945665	BS	13	197	6.5	6.0	6.2	1.8	224	chr2R	9945441	intron	Mef2 -	chr2R	9945553	intron	Mef2 -	chr2R	9945665	intron	Mef2 -	chr2R_13_9945001	chr2R_9945001	RC1_1-HE
795	chr2R	10005845	10005880	chr2R	10007011	10007046	1360	19	1166	7.5	5.0	6.2	2.6	1201	chr2R	10005845	intron	Pka-R2 -	chr2R	10006446	intron	Pka-R2 -	chr2R	10007046	intron	Pka-R2 -	chr2R_19_10005001	chr2R_10005001	RC1_1-HE
802	chr2R	10176881	10176911	chr2R	10186049	10186079	roo	16	9167	8.0	5.0	6.5	2.1	9198	chr2R	10176881	intron	KCNQ -	chr2R	10181480	intron	KCNQ -	chr2R	10186079	intron	KCNQ -	chr2R_16_10180001	chr2R_10180001	RC1_1-HE
820	chr2R	10585581	10585591	chr2R	10594160	10594175	Tirant	5	8583	2.5	4.5	3.5	1.1	8594	chr2R	10585581	intron	psq +	chr2R	10589878	intron	psq +	chr2R	10594175	intron	psq +	chr2R_5_10585001	chr2R_10585001	RC1_1-HE
829	chr2R	10875638	10875651	chr2R	10875737	10875749	1360	4	99	3.5	1.5	2.5	1.1	111	chr2R	10875638	intergenic	nclb +,CG30016 -	chr2R	10875694	intergenic	nclb +,CG30016 -	chr2R	10875749	5` UTR	nclb +	chr2R_4_10875001	chr2R_10875001	RC1_1-HE
834	chr2R	10948025	10948061	chr2R	10955576	10955613	17.6	13	7552	0.5	3.0	1.8	4.6	7588	chr2R	10948025	intergenic	not near genes	chr2R	10951819	intergenic	not near genes	chr2R	10955613	intergenic	not near genes	chr2R_13_10950001	chr2R_10950001	RC1_1-HE
836	chr2R	10979662	10979681	chr2R	10980130	10980150	297	7	469	2.5	2.0	2.2	2.2	488	chr2R	10979662	intergenic	not near genes	chr2R	10979906	intergenic	not near genes	chr2R	10980150	intergenic	not near genes	chr2R_7_10975001	chr2R_10975001	RC1_1-HE
837	chr2R	11009814	11009845	chr2R	11018989	11019020	roo	8	9175	5.5	5.0	5.2	1.3	9206	chr2R	11009814	intron	luna -	chr2R	11014417	intron	luna -	chr2R	11019020	intron	luna -	chr2R_8_11010001	chr2R_11010001	RC1_1-HE
838	chr2R	11019887	11019908	chr2R	11024954	11024975	jockey	12	5066	4.5	5.5	5.0	2.0	5088	chr2R	11019887	intron	luna -	chr2R	11022431	intron	luna -	chr2R	11024975	intron	luna -	chr2R_12_11020001	chr2R_11020001	RC1_1-HE
844	chr2R	11207827	11207842	chr2R	11208020	11208035	BS	7	193	13.5	9.5	11.5	0.6	208	chr2R	11207827	intron	shn +	chr2R	11207931	intron	shn +	chr2R	11208035	intron	shn +	chr2R_7_11205001	chr2R_11205001	RC1_1-HE
845	chr2R	11207844	11207847	chr2R	11208006	11208040	BS	4	185	10.5	6.5	8.5	0.4	196	chr2R	11207844	intron	shn +	chr2R	11207942	intron	shn +	chr2R	11208040	intron	shn +	chr2R_4_11205001	chr2R_11205001	RC1_1-HE
847	chr2R	11297638	11297646	chr2R	11301960	11301968	flea	7	4322	4.5	3.5	4.0	1.4	4330	chr2R	11297638	intergenic	CG42336 -	chr2R	11299803	intergenic	not near genes	chr2R	11301968	5` UTR	CG7741 +	chr2R_7_11295001	chr2R_11295001	RC1_1-HE
852	chr2R	11415522	11415551	chr2R	11418672	11418701	opus	11	3148	5.5	7.0	6.2	1.5	3179	chr2R	11415522	intron	Drip -	chr2R	11417112	intron	Drip -	chr2R	11418701	intron	Drip -	chr2R_11_11415001	chr2R_11415001	RC1_1-HE
854	chr2R	11472648	11472679	chr2R	11473846	11473877	pogo	9	1198	3.5	3.5	3.5	2.0	1229	chr2R	11472648	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473877	intergenic	not near genes	chr2R_9_11470001	chr2R_11470001	RC1_1-HE
873	chr2R	12481144	12481169	chr2R	12482938	12482974	roo	11	1801	2.5	1.5	2.0	3.7	1830	chr2R	12481144	exon	Dh44-R2 +	chr2R	12482059	intron	Dh44-R2 +	chr2R	12482974	intron	Dh44-R2 +	chr2R_11_12480001	chr2R_12480001	RC1_1-HE
875	chr2R	12501690	12501725	chr2R	12503853	12503888	Rt1c	5	2163	1.0	3.0	2.0	1.7	2198	chr2R	12501690	intron	fdl -	chr2R	12502789	intron	fdl -	chr2R	12503888	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RC1_1-HE
881	chr2R	12707519	12707545	chr2R	12715886	12715912	roo	13	8367	4.0	4.0	4.0	2.6	8393	chr2R	12707519	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715912	intron	CG42663 +	chr2R_13_12710001	chr2R_12710001	RC1_1-HE
883	chr2R	12789294	12789308	chr2R	12797658	12797672	roo	10	8363	6.5	7.0	6.8	1.3	8378	chr2R	12789294	intron,3` UTR	sca +,CR45137 -	chr2R	12793483	intron,intron	sca +,CR45137 -	chr2R	12797672	intron,3` UTR	sca +,CR45137 -	chr2R_10_12790001	chr2R_12790001	RC1_1-HE
884	chr2R	12789309	12789325	chr2R	12797657	12797682	roo	8	8360	5.0	7.0	6.0	1.1	8373	chr2R	12789309	intron,3` UTR	sca +,CR45137 -	chr2R	12793496	intron,intron	sca +,CR45137 -	chr2R	12797682	intron,3` UTR	sca +,CR45137 -	chr2R_8_12790001	chr2R_12790001	RC1_1-HE
887	chr2R	12819455	12819479	chr2R	12824528	12824553	jockey	9	5074	1.5	9.5	5.5	1.4	5098	chr2R	12819455	intergenic	not near genes	chr2R	12822004	intergenic	not near genes	chr2R	12824553	intergenic	not near genes	chr2R_9_12820001	chr2R_12820001	RC1_1-HE
897	chr2R	13136835	13136863	chr2R	13141634	13141662	Doc	6	4799	2.5	3.5	3.0	1.5	4827	chr2R	13136835	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141662	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	RC1_1-HE
905	chr2R	13580497	13580532	chr2R	13580848	13580883	jockey	6	351	0.0	1.0	0.5	4.0	386	chr2R	13580497	3` UTR	CG6191 -	chr2R	13580690	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580883	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_6_13580001	chr2R_13580001	RC1_1-HE
910	chr2R	13728129	13728141	chr2R	13735790	13735802	opus	10	7661	5.5	4.5	5.0	1.7	7673	chr2R	13728129	intron	fas +	chr2R	13731966	intron	fas +	chr2R	13735802	intron	fas +	chr2R_10_13730001	chr2R_13730001	RC1_1-HE
918	chr2R	14394230	14394247	chr2R	14399020	14399037	Doc	10	4790	5.0	4.0	4.5	1.8	4807	chr2R	14394230	intergenic	not near genes	chr2R	14396634	intergenic	not near genes	chr2R	14399037	intergenic	not near genes	chr2R_10_14395001	chr2R_14395001	RC1_1-HE
920	chr2R	14467291	14467326	chr2R	14476444	14476448	roo	24	9152	2.0	6.0	4.0	4.8	9157	chr2R	14467291	intergenic	not near genes	chr2R	14471870	intergenic	not near genes	chr2R	14476448	5` UTR	CR44462 +	chr2R_24_14470001	chr2R_14470001	RC1_1-HE
921	chr2R	14497387	14497422	chr2R	14498554	14498563	1360	16	1165	3.5	8.5	6.0	2.3	1176	chr2R	14497387	3` UTR	Cpsf160 -	chr2R	14497975	intron	Cpsf160 -	chr2R	14498563	3` UTR	Cpsf160 -	chr2R_16_14495001	chr2R_14495001	RC1_1-HE
934	chr2R	14889210	14889235	chr2R	14897819	14897844	Max-element	10	8609	2.5	0.0	1.2	4.5	8634	chr2R	14889210	intergenic	Cyp6a8 -	chr2R	14893527	intergenic	not near genes	chr2R	14897844	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	RC1_1-HE
938	chr2R	15015460	15015490	chr2R	15022883	15022915	mdg1	8	7425	4.0	4.0	4.0	1.6	7455	chr2R	15015460	intron	hbs +	chr2R	15019188	intron	hbs +	chr2R	15022915	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RC1_1-HE
941	chr2R	15084987	15085006	chr2R	15092037	15092056	297	9	7050	5.0	5.5	5.2	1.5	7069	chr2R	15084987	intergenic	not near genes	chr2R	15088522	intergenic	not near genes	chr2R	15092056	5` UTR	CR44457 +	chr2R_9_15085001	chr2R_15085001	RC1_1-HE
943	chr2R	15119315	15119351	chr2R	15127797	15127833	Tirant	16	8482	5.5	9.0	7.2	2.0	8518	chr2R	15119315	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127833	intron	chn +	chr2R_16_15120001	chr2R_15120001	RC1_1-HE
988	chr2R	17236505	17236540	chr2R	17241710	17241745	copia	14	5203	4.0	4.0	4.0	2.8	5240	chr2R	17236505	intron	mbl +	chr2R	17239125	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_14_17235001	chr2R_17235001	RC1_1-HE
1003	chr2R	17782361	17782386	chr2R	17783565	17783590	pogo	9	1204	3.0	4.0	3.5	2.0	1229	chr2R	17782361	intergenic	CG33981 -,fab1 -	chr2R	17782976	intergenic	not near genes	chr2R	17783590	intergenic	mir-31a -	chr2R_9_17780001	chr2R_17780001	RC1_1-HE
1004	chr2R	17784024	17784057	chr2R	17784266	17784299	pogo	16	242	5.5	6.5	6.0	2.3	275	chr2R	17784024	intergenic	mir-31a -	chr2R	17784162	intergenic	mir-31a -	chr2R	17784299	intergenic	mir-31a -	chr2R_16_17780001	chr2R_17780001	RC1_1-HE
1017	chr2R	18111692	18111716	chr2R	18115561	18115585	F-element	10	3869	3.0	7.5	5.2	1.6	3893	chr2R	18111692	intergenic	not near genes	chr2R	18113638	intergenic	not near genes	chr2R	18115585	intergenic	not near genes	chr2R_10_18110001	chr2R_18110001	RC1_1-HE
1023	chr2R	18358387	18358425	chr2R	18372600	18372639	roo	12	14213	5.5	2.0	3.8	2.5	14252	chr2R	18358387	intergenic	not near genes	chr2R	18365513	intergenic	not near genes	chr2R	18372639	intergenic	not near genes	chr2R_12_18365001	chr2R_18365001	RC1_1-HE
1032	chr2R	18575798	18575810	chr2R	18581987	18581998	3S18	5	6186	5.5	3.5	4.5	0.9	6200	chr2R	18575798	intron	GEFmeso -	chr2R	18578898	intron	GEFmeso -	chr2R	18581998	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RC1_1-HE
1033	chr2R	18575811	18575828	chr2R	18581983	18582017	3S18	13	6179	3.0	3.5	3.2	3.1	6206	chr2R	18575811	intron	GEFmeso -	chr2R	18578914	intron	GEFmeso -	chr2R	18582017	intron	GEFmeso -	chr2R_13_18575001	chr2R_18575001	RC1_1-HE
1034	chr2R	18590867	18590901	chr2R	18600020	18600054	roo	14	9153	5.5	1.5	3.5	3.1	9187	chr2R	18590867	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600054	intron	GEFmeso -	chr2R_14_18595001	chr2R_18595001	RC1_1-HE
1062	chr2R	19914844	19914875	chr2R	19922257	19922288	mdg1	6	7413	3.5	4.5	4.0	1.2	7444	chr2R	19914844	intergenic	not near genes	chr2R	19918566	intergenic	not near genes	chr2R	19922288	intergenic	not near genes	chr2R_6_19915001	chr2R_19915001	RC1_1-HE
1065	chr2R	19957440	19957461	chr2R	19962637	19962657	copia	8	5197	4.0	7.5	5.8	1.2	5217	chr2R	19957440	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962657	intergenic	not near genes	chr2R_8_19960001	chr2R_19960001	RC1_1-HE
1069	chr2R	20069241	20069275	chr2R	20071872	20071907	opus	7	2632	6.0	2.5	4.2	1.3	2666	chr2R	20069241	intergenic	not near genes	chr2R	20070574	intergenic	not near genes	chr2R	20071907	intergenic	not near genes	chr2R_7_20070001	chr2R_20070001	RC1_1-HE
1088	chr2R	20739440	20739479	chr2R	20744209	20744232	F-element	18	4768	3.0	3.5	3.2	4.3	4792	chr2R	20739440	intron	dpr +	chr2R	20741836	intron	dpr +	chr2R	20744232	intron	dpr +	chr2R_18_20740001	chr2R_20740001	RC1_1-HE
1109	chr2R	21738288	21738307	chr2R	21747449	21747458	roo	9	9158	2.5	9.5	6.0	1.3	9170	chr2R	21738288	intergenic	not near genes	chr2R	21742873	intergenic	not near genes	chr2R	21747458	intergenic	not near genes	chr2R_9_21740001	chr2R_21740001	RC1_1-HE
1110	chr2R	21753081	21753113	chr2R	21753567	21753599	roo	12	486	5.0	5.5	5.2	1.9	518	chr2R	21753081	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753599	intergenic	not near genes	chr2R_12_21750001	chr2R_21750001	RC1_1-HE
1111	chr2R	21809522	21809538	chr2R	21817762	21817778	roo	7	8240	8.0	3.5	5.8	1.0	8256	chr2R	21809522	intergenic	not near genes	chr2R	21813650	intergenic	not near genes	chr2R	21817778	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RC1_1-HE
1129	chr2R	22349689	22349723	chr2R	22351474	22351508	jockey	24	1785	8.5	11.5	10.0	2.2	1819	chr2R	22349689	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351508	intron	Liprin-gamma -	chr2R_24_22350001	chr2R_22350001	RC1_1-HE
1131	chr2R	22360380	22360405	chr2R	22360814	22360823	jockey	9	432	9.0	1.5	5.2	1.5	443	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360602	intron	Liprin-gamma -	chr2R	22360823	intron	Liprin-gamma -	chr2R_9_22360001	chr2R_22360001	RC1_1-HE
1136	chr2R	22465316	22465345	chr2R	22465510	22465545	BS	9	195	1.0	5.0	3.0	2.2	229	chr2R	22465316	intron	CG10384 +	chr2R	22465430	intron	CG10384 +	chr2R	22465545	intron	CG10384 +	chr2R_9_22465001	chr2R_22465001	RC1_1-HE
1138	chr2R	22525748	22525785	chr2R	22529304	22529341	jockey	10	3549	1.0	6.0	3.5	2.2	3593	chr2R	22525748	intron	px -	chr2R	22527544	intron	px -	chr2R	22529341	intron	px -	chr2R_10_22525001	chr2R_22525001	RC1_1-HE
1144	chr2R	22774959	22775002	chr2R	22775379	22775422	jockey	19	420	7.5	4.0	5.8	2.8	463	chr2R	22774959	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775422	intron	CG42260 -	chr2R_19_22775001	chr2R_22775001	RC1_1-HE
1148	chr2R	22843029	22843044	chr2R	22844988	22845003	flea	5	1959	2.5	5.0	3.8	1.0	1974	chr2R	22843029	intergenic	CG9826 +	chr2R	22844016	intergenic	not near genes	chr2R	22845003	intergenic	not near genes	chr2R_5_22840001	chr2R_22840001	RC1_1-HE
1165	chr2R	23529573	23529606	chr2R	23537150	23537166	412	6	7574	2.5	2.0	2.2	1.9	7593	chr2R	23529573	intron	bw -	chr2R	23533370	intron	bw -	chr2R	23537166	exon	bw -	chr2R_6_23530001	chr2R_23530001	RC1_1-HE
1174	chr2R	23914314	23914324	chr2R	23921939	23921949	412	7	7625	5.0	5.0	5.0	1.2	7635	chr2R	23914314	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23921949	intron	kcc +	chr2R_7_23915001	chr2R_23915001	RC1_1-HE
1177	chr2R	24177233	24177248	chr2R	24184719	24184734	412	7	7486	7.5	2.5	5.0	1.2	7501	chr2R	24177233	3` UTR	Nop60B +	chr2R	24180984	intron	Nop60B +	chr2R	24184734	3` UTR	Nop60B +	chr2R_7_24180001	chr2R_24180001	RC1_1-HE
1178	chr2R	24353426	24353460	chr2R	24361789	24361823	roo	8	8363	1.5	2.5	2.0	2.7	8397	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361823	intron,intron	bs +,CR44811 -	chr2R_8_24355001	chr2R_24355001	RC1_1-HE
1183	chr2R	24647590	24647615	chr2R	24655148	24655173	412	11	7557	2.0	2.0	2.0	3.7	7583	chr2R	24647590	intergenic	not near genes	chr2R	24651382	intergenic	not near genes	chr2R	24655173	intergenic	not near genes	chr2R_11_24650001	chr2R_24650001	RC1_1-HE
1185	chr2R	24727881	24727913	chr2R	24735390	24735422	mdg1	12	7509	4.5	2.0	3.2	2.9	7541	chr2R	24727881	intron	Mid1 -	chr2R	24731652	intron	Mid1 -	chr2R	24735422	intron	Mid1 -	chr2R_12_24730001	chr2R_24730001	RC1_1-HE
1187	chr2R	24763609	24763641	chr2R	24765586	24765613	G2	7	1976	4.0	1.0	2.5	2.0	2004	chr2R	24763609	exon	CG3894 +	chr2R	24764611	intron	CG3894 +	chr2R	24765613	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	RC1_1-HE
1192	chr2R	25141647	25141678	chr2R	25159338	25159369	roo	9	17691	3.5	2.0	2.8	2.4	17722	chr2R	25141647	intergenic	not near genes	chr2R	25150508	intergenic	not near genes	chr2R	25159369	intergenic	not near genes	chr2R_9_25150001	chr2R_25150001	RC1_1-HE
1195	chr3L	110214	110245	chr3L	119382	119413	roo	10	9168	3.0	3.0	3.0	2.5	9199	chr3L	110214	intergenic	not near genes	chr3L	114814	intergenic	not near genes	chr3L	119413	intergenic	not near genes	chr3L_10_110001	chr3L_110001	RC1_1-HE
1200	chr3L	402687	402717	chr3L	409741	409771	297	18	7054	9.5	8.0	8.8	1.8	7084	chr3L	402687	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409771	intergenic	not near genes	chr3L_18_405001	chr3L_405001	RC1_1-HE
1215	chr3L	789914	789946	chr3L	790400	790432	roo	22	486	4.0	5.0	4.5	4.0	518	chr3L	789914	intergenic	not near genes	chr3L	790173	intergenic	not near genes	chr3L	790432	intergenic	not near genes	chr3L_22_790001	chr3L_790001	RC1_1-HE
1218	chr3L	857996	858025	chr3L	866478	866507	Tirant	7	8481	6.5	6.0	6.2	1.0	8511	chr3L	857996	intergenic	not near genes	chr3L	862252	intergenic	not near genes	chr3L	866507	5` UTR	CG12502 +	chr3L_7_860001	chr3L_860001	RC1_1-HE
1219	chr3L	925176	925209	chr3L	932603	932636	mdg1	5	7427	2.0	4.5	3.2	1.2	7460	chr3L	925176	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_5_925001	chr3L_925001	RC1_1-HE
1221	chr3L	939767	939783	chr3L	940889	940905	jockey	6	1122	6.5	6.5	6.5	0.8	1138	chr3L	939767	intron	Glut1 +	chr3L	940336	intron	Glut1 +	chr3L	940905	intron	Glut1 +	chr3L_6_940001	chr3L_940001	RC1_1-HE
1222	chr3L	939787	939800	chr3L	940888	940922	jockey	8	1119	5.5	6.0	5.8	1.2	1135	chr3L	939787	intron	Glut1 +	chr3L	940354	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_8_940001	chr3L_940001	RC1_1-HE
1231	chr3L	1154130	1154151	chr3L	1163281	1163302	roo	5	9151	6.0	0.5	3.2	1.2	9172	chr3L	1154130	intron	bab2 -	chr3L	1158716	intron	bab2 -	chr3L	1163302	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RC1_1-HE
1232	chr3L	1219603	1219624	chr3L	1227337	1227358	412	5	7734	3.0	4.5	3.8	1.0	7755	chr3L	1219603	intron	mwh +	chr3L	1223480	intron	mwh +	chr3L	1227358	intron	mwh +	chr3L_5_1220001	chr3L_1220001	RC1_1-HE
1238	chr3L	1505994	1506030	chr3L	1513592	1513628	17.6	23	7598	2.5	6.0	4.2	4.4	7634	chr3L	1505994	intron,intron	Psa +,cue -	chr3L	1509811	intron,intron	Psa +,cue -	chr3L	1513628	intron,intron	Psa +,cue -	chr3L_23_1505001	chr3L_1505001	RC1_1-HE
1246	chr3L	1740851	1740882	chr3L	1741097	1741128	pogo	9	244	2.0	1.5	1.8	3.2	277	chr3L	1740851	intron	Gk +	chr3L	1740990	intron	Gk +	chr3L	1741128	intron	Gk +	chr3L_9_1740001	chr3L_1740001	RC1_1-HE
1257	chr3L	2447505	2447538	chr3L	2456662	2456695	roo	7	9157	2.5	3.5	3.0	1.8	9190	chr3L	2447505	intron	CG45186 +	chr3L	2452100	intron	CG45186 +	chr3L	2456695	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RC1_1-HE
1274	chr3L	2751448	2751460	chr3L	2755744	2755756	F-element	4	4296	9.0	3.0	6.0	0.6	4308	chr3L	2751448	intron	Mrtf -	chr3L	2753602	intron	Mrtf -	chr3L	2755756	intron	Mrtf -	chr3L_4_2750001	chr3L_2750001	RC1_1-HE
1279	chr3L	2927837	2927872	chr3L	2936115	2936149	Tirant	21	8277	4.0	6.5	5.2	3.4	8312	chr3L	2927837	intron	Shab +	chr3L	2931993	intron	Shab +	chr3L	2936149	intron	Shab +	chr3L_21_2930001	chr3L_2930001	RC1_1-HE
1281	chr3L	3061283	3061296	chr3L	3069867	3069880	Tirant	6	8581	11.0	4.5	7.8	0.7	8597	chr3L	3061283	intron	CG32486 -	chr3L	3065582	intron	CG32486 -	chr3L	3069880	intron	CG32486 -	chr3L_6_3065001	chr3L_3065001	RC1_1-HE
1282	chr3L	3061297	3061316	chr3L	3069866	3069900	Tirant	16	8582	6.0	4.5	5.2	2.6	8603	chr3L	3061297	intron	CG32486 -	chr3L	3065598	intron	CG32486 -	chr3L	3069900	intron	CG32486 -	chr3L_16_3065001	chr3L_3065001	RC1_1-HE
1286	chr3L	3281435	3281475	chr3L	3281931	3281972	Doc	11	497	2.5	8.0	5.2	1.8	537	chr3L	3281435	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281972	intron	CG12017 +	chr3L_11_3280001	chr3L_3280001	RC1_1-HE
1294	chr3L	3475078	3475113	chr3L	3475523	3475558	jockey	13	445	1.0	4.0	2.5	3.7	480	chr3L	3475078	intron	CG42324 +	chr3L	3475318	intron	CG42324 +	chr3L	3475558	intron	CG42324 +	chr3L_13_3475001	chr3L_3475001	RC1_1-HE
1303	chr3L	3601297	3601329	chr3L	3606609	3606641	copia	6	5312	3.0	2.5	2.8	1.6	5344	chr3L	3601297	intron	Eip63E +	chr3L	3603969	intron	Eip63E +	chr3L	3606641	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	RC1_1-HE
1308	chr3L	3833737	3833767	chr3L	3833979	3834009	pogo	12	242	4.5	4.5	4.5	2.2	272	chr3L	3833737	intron	enc +	chr3L	3833873	intron	enc +	chr3L	3834009	intron	enc +	chr3L_12_3830001	chr3L_3830001	RC1_1-HE
1323	chr3L	4328736	4328765	chr3L	4336235	4336264	412	14	7499	3.0	4.5	3.8	2.9	7528	chr3L	4328736	intron	Cip4 -	chr3L	4332500	intron	Cip4 -	chr3L	4336264	intron	Cip4 -	chr3L_14_4330001	chr3L_4330001	RC1_1-HE
1338	chr3L	4901125	4901148	chr3L	4907316	4907339	diver	6	6191	2.0	0.0	1.0	3.0	6214	chr3L	4901125	intergenic	CG13704 +	chr3L	4904232	intergenic	not near genes	chr3L	4907339	intergenic	not near genes	chr3L_6_4900001	chr3L_4900001	RC1_1-HE
1340	chr3L	5045454	5045483	chr3L	5050236	5050265	Doc	7	4782	6.5	6.5	6.5	0.9	4811	chr3L	5045454	intron	Con -	chr3L	5047860	intron	Con -	chr3L	5050265	intron	Con -	chr3L_7_5045001	chr3L_5045001	RC1_1-HE
1357	chr3L	5537723	5537747	chr3L	5538066	5538084	jockey	9	342	2.5	2.5	2.5	2.6	361	chr3L	5537723	intergenic	not near genes	chr3L	5537904	intergenic	not near genes	chr3L	5538084	intergenic	CG10625 -	chr3L_9_5535001	chr3L_5535001	RC1_1-HE
1365	chr3L	5910030	5910062	chr3L	5910272	5910304	pogo	10	242	2.5	4.5	3.5	2.2	274	chr3L	5910030	intron	CG13288 +	chr3L	5910167	intron	CG13288 +	chr3L	5910304	intron	CG13288 +	chr3L_10_5910001	chr3L_5910001	RC1_1-HE
1366	chr3L	5926315	5926348	chr3L	5926506	5926539	BS	12	189	4.5	4.0	4.2	2.3	224	chr3L	5926315	intron	Vap-33B +	chr3L	5926427	intron	Vap-33B +	chr3L	5926539	intron	Vap-33B +	chr3L_12_5925001	chr3L_5925001	RC1_1-HE
1370	chr3L	6001679	6001717	chr3L	6004380	6004418	jockey	10	2700	8.5	2.0	5.2	1.6	2739	chr3L	6001679	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004418	intron	PVRAP +	chr3L_10_6000001	chr3L_6000001	RC1_1-HE
1373	chr3L	6040369	6040393	chr3L	6042726	6042750	Doc	13	2357	2.0	7.5	4.8	2.2	2381	chr3L	6040369	intergenic	Jon65Aiv +	chr3L	6041560	intergenic	not near genes	chr3L	6042750	intergenic	not near genes	chr3L_13_6040001	chr3L_6040001	RC1_1-HE
1379	chr3L	6220916	6220941	chr3L	6230069	6230094	roo	9	9153	2.5	5.0	3.8	1.9	9178	chr3L	6220916	5` UTR	pncr008:3L +	chr3L	6225505	intergenic	not near genes	chr3L	6230094	intergenic	not near genes	chr3L_9_6225001	chr3L_6225001	RC1_1-HE
1381	chr3L	6335012	6335021	chr3L	6335484	6335493	297	5	472	7.5	7.5	7.5	0.6	481	chr3L	6335012	intron	CG13300 -	chr3L	6335252	intron	CG13300 -	chr3L	6335493	intron	CG13300 -	chr3L_5_6335001	chr3L_6335001	RC1_1-HE
1382	chr3L	6335022	6335040	chr3L	6335481	6335512	297	13	471	2.5	7.0	4.8	2.2	490	chr3L	6335022	intron	CG13300 -	chr3L	6335267	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_13_6335001	chr3L_6335001	RC1_1-HE
1384	chr3L	6405658	6405688	chr3L	6432123	6432153	roo	8	26465	4.0	4.0	4.0	1.6	26495	chr3L	6405658	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432153	intron	CG42747 +	chr3L_8_6415001	chr3L_6415001	RC1_1-HE
1390	chr3L	6781124	6781150	chr3L	6783138	6783164	Doc	20	2013	4.0	1.5	2.8	5.3	2040	chr3L	6781124	intergenic	not near genes	chr3L	6782144	intergenic	not near genes	chr3L	6783164	intergenic	not near genes	chr3L_20_6780001	chr3L_6780001	RC1_1-HE
1392	chr3L	6855933	6855954	chr3L	6860720	6860741	Doc	10	4787	5.0	5.5	5.2	1.6	4808	chr3L	6855933	intergenic	not near genes	chr3L	6858337	intergenic	not near genes	chr3L	6860741	intergenic	not near genes	chr3L_10_6855001	chr3L_6855001	RC1_1-HE
1393	chr3L	6887518	6887536	chr3L	6895011	6895029	roo	7	7493	2.5	0.0	1.2	3.2	7511	chr3L	6887518	intergenic	not near genes	chr3L	6891274	intergenic	not near genes	chr3L	6895029	intergenic	not near genes	chr3L_7_6890001	chr3L_6890001	RC1_1-HE
1401	chr3L	7129959	7129983	chr3L	7130152	7130176	BS	5	193	3.0	2.5	2.8	1.3	217	chr3L	7129959	intergenic	CG15829 +	chr3L	7130068	intergenic	CG15829 +	chr3L	7130176	intergenic	not near genes	chr3L_5_7130001	chr3L_7130001	RC1_1-HE
1410	chr3L	7377315	7377348	chr3L	7380421	7380454	297	9	3106	3.0	1.0	2.0	3.0	3139	chr3L	7377315	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380454	intron	SMSr -	chr3L_9_7375001	chr3L_7375001	RC1_1-HE
1411	chr3L	7498756	7498785	chr3L	7503534	7503563	F-element	11	4778	5.5	5.5	5.5	1.7	4807	chr3L	7498756	5` UTR	CG8539 -	chr3L	7501160	intergenic	not near genes	chr3L	7503563	intergenic	not near genes	chr3L_11_7500001	chr3L_7500001	RC1_1-HE
1419	chr3L	7793712	7793745	chr3L	7800765	7800798	297	17	7053	4.5	5.5	5.0	2.8	7086	chr3L	7793712	intron	CG32369 -	chr3L	7797255	intron	CG32369 -	chr3L	7800798	intron	CG32369 -	chr3L_17_7795001	chr3L_7795001	RC1_1-HE
1424	chr3L	7886523	7886547	chr3L	7889033	7889066	Stalker4	11	2518	3.0	2.5	2.8	2.9	2543	chr3L	7886523	intron	CG32365 +	chr3L	7887794	intron	CG32365 +	chr3L	7889066	intron	CG32365 +	chr3L_11_7885001	chr3L_7885001	RC1_1-HE
1426	chr3L	7916829	7916861	chr3L	7926001	7926033	roo	14	9170	3.5	2.0	2.8	3.7	9204	chr3L	7916829	3` UTR	syd -	chr3L	7921431	intron	syd -	chr3L	7926033	3` UTR	syd -	chr3L_14_7920001	chr3L_7920001	RC1_1-HE
1429	chr3L	8019704	8019733	chr3L	8024119	8024147	NOF	5	4414	2.0	4.0	3.0	1.2	4443	chr3L	8019704	intron	nmo +	chr3L	8021926	intron	nmo +	chr3L	8024147	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RC1_1-HE
1442	chr3L	8481774	8481804	chr3L	8490934	8490934	roo	7	9151	0.5	2.5	1.5	2.8	9160	chr3L	8481774	intron	CG43163 -	chr3L	8486354	intron	CG43163 -	chr3L	8490934	intron	CG43163 -	chr3L_7_8485001	chr3L_8485001	RC1_1-HE
1443	chr3L	8498295	8498330	chr3L	8505763	8505798	blood	10	7468	0.0	3.0	1.5	4.0	7503	chr3L	8498295	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505798	intron	CG43163 -	chr3L_10_8500001	chr3L_8500001	RC1_1-HE
1448	chr3L	8791279	8791299	chr3L	8796700	8796706	I-element	6	5418	4.0	0.0	2.0	2.0	5427	chr3L	8791279	exon	Fhos +	chr3L	8793992	intron	Fhos +	chr3L	8796706	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RC1_1-HE
1455	chr3L	9076940	9076959	chr3L	9084501	9084509	412	9	7560	7.0	11.5	9.2	0.9	7569	chr3L	9076940	exon	Tequila +	chr3L	9080724	intron	Tequila +	chr3L	9084509	exon	Tequila +	chr3L_9_9080001	chr3L_9080001	RC1_1-HE
1458	chr3L	9164694	9164730	chr3L	9166162	9166198	hobo	17	1468	4.0	1.0	2.5	4.9	1504	chr3L	9164694	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_17_9165001	chr3L_9165001	RC1_1-HE
1461	chr3L	9219242	9219276	chr3L	9219915	9219936	jockey	14	668	8.0	9.0	8.5	1.5	694	chr3L	9219242	intergenic	not near genes	chr3L	9219589	intergenic	not near genes	chr3L	9219936	intergenic	not near genes	chr3L_14_9215001	chr3L_9215001	RC1_1-HE
1463	chr3L	9270615	9270651	chr3L	9278371	9278407	roo	5	7756	2.5	5.0	3.8	1.0	7792	chr3L	9270615	intron	GluRIB +	chr3L	9274511	intron	GluRIB +	chr3L	9278407	exon	GluRIB +	chr3L_5_9270001	chr3L_9270001	RC1_1-HE
1467	chr3L	9443514	9443540	chr3L	9445302	9445328	S-element	10	1788	5.0	2.5	3.8	2.1	1814	chr3L	9443514	intron	CG33926 +	chr3L	9444421	intron	CG33926 +	chr3L	9445328	intron	CG33926 +	chr3L_10_9440001	chr3L_9440001	RC1_1-HE
1468	chr3L	9533750	9533783	chr3L	9541311	9541342	412	14	7558	7.5	8.5	8.0	1.6	7592	chr3L	9533750	intergenic	not near genes	chr3L	9537546	intergenic	not near genes	chr3L	9541342	intergenic	not near genes	chr3L_14_9535001	chr3L_9535001	RC1_1-HE
1470	chr3L	9571899	9571925	chr3L	9572248	9572274	jockey	12	349	6.0	0.0	3.0	3.0	375	chr3L	9571899	intron	CG42673 +	chr3L	9572086	intron	CG42673 +	chr3L	9572274	intron	CG42673 +	chr3L_12_9570001	chr3L_9570001	RC1_1-HE
1471	chr3L	9575905	9575936	chr3L	9580984	9581015	jockey	14	5079	11.0	1.0	6.0	2.0	5110	chr3L	9575905	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581015	intron	CG42673 +	chr3L_14_9575001	chr3L_9575001	RC1_1-HE
1479	chr3L	9929675	9929699	chr3L	9938455	9938480	roo	7	8781	3.5	1.5	2.5	2.0	8805	chr3L	9929675	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938480	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RC1_1-HE
1497	chr3L	10414942	10414972	chr3L	10417315	10417345	Doc	14	2373	1.0	4.5	2.8	3.7	2403	chr3L	10414942	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417345	intergenic	not near genes	chr3L_14_10415001	chr3L_10415001	RC1_1-HE
1514	chr3L	11087064	11087088	chr3L	11088854	11088878	S-element	16	1790	4.0	1.5	2.8	4.2	1814	chr3L	11087064	intron	JIL-1 -	chr3L	11087971	intron	JIL-1 -	chr3L	11088878	intron	JIL-1 -	chr3L_16_11085001	chr3L_11085001	RC1_1-HE
1515	chr3L	11105291	11105307	chr3L	11107003	11107019	X-element	6	1712	0.0	1.5	0.8	3.3	1728	chr3L	11105291	intergenic	not near genes	chr3L	11106155	intergenic	not near genes	chr3L	11107019	3` UTR	CG32073 -	chr3L_6_11105001	chr3L_11105001	RC1_1-HE
1522	chr3L	11264464	11264496	chr3L	11271417	11271449	17.6	5	6953	2.5	1.5	2.0	1.7	6985	chr3L	11264464	intergenic	not near genes	chr3L	11267956	intergenic	not near genes	chr3L	11271449	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RC1_1-HE
1523	chr3L	11277470	11277484	chr3L	11278466	11278480	Rt1a	4	996	1.0	1.5	1.2	1.8	1010	chr3L	11277470	intergenic	not near genes	chr3L	11277975	intergenic	not near genes	chr3L	11278480	intergenic	not near genes	chr3L_4_11275001	chr3L_11275001	RC1_1-HE
1526	chr3L	11329709	11329728	chr3L	11332895	11332928	jockey	8	3203	2.5	3.5	3.0	2.0	3219	chr3L	11329709	intergenic	not near genes	chr3L	11331318	intergenic	not near genes	chr3L	11332928	intergenic	not near genes	chr3L_8_11330001	chr3L_11330001	RC1_1-HE
1534	chr3L	11564792	11564810	chr3L	11572408	11572436	412	8	7621	2.0	4.0	3.0	2.0	7644	chr3L	11564792	exon	CG33267 +	chr3L	11568614	intron	CG33267 +	chr3L	11572436	exon	CG33267 +	chr3L_8_11565001	chr3L_11565001	RC1_1-HE
1540	chr3L	11723080	11723113	chr3L	11727876	11727909	Doc	18	4796	8.0	5.0	6.5	2.4	4829	chr3L	11723080	3` UTR	Bmcp +	chr3L	11725494	intron	Bmcp +	chr3L	11727909	3` UTR	Bmcp +	chr3L_18_11725001	chr3L_11725001	RC1_1-HE
1546	chr3L	11864551	11864577	chr3L	11865847	11865873	pogo	16	1296	4.5	4.0	4.2	3.1	1322	chr3L	11864551	intron	CG44837 -	chr3L	11865212	intron	CG44837 -	chr3L	11865873	intron	CG44837 -	chr3L_16_11865001	chr3L_11865001	RC1_1-HE
1576	chr3L	12874922	12874958	chr3L	12877215	12877251	jockey	20	2293	3.0	4.0	3.5	4.4	2329	chr3L	12874922	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877251	intergenic	not near genes	chr3L_20_12875001	chr3L_12875001	RC1_1-HE
1578	chr3L	12919273	12919303	chr3L	12924747	12924777	Rt1c	16	5473	8.0	4.0	6.0	2.3	5504	chr3L	12919273	intergenic	not near genes	chr3L	12922025	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_16_12920001	chr3L_12920001	RC1_1-HE
1580	chr3L	12957794	12957815	chr3L	12962277	12962298	copia	10	4483	3.5	9.0	6.2	1.4	4504	chr3L	12957794	intergenic	not near genes	chr3L	12960046	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_10_12960001	chr3L_12960001	RC1_1-HE
1604	chr3L	13525155	13525188	chr3L	13532952	13532985	roo	11	7795	4.0	4.5	4.2	2.1	7830	chr3L	13525155	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532985	intergenic	not near genes	chr3L_11_13525001	chr3L_13525001	RC1_1-HE
1615	chr3L	13804543	13804577	chr3L	13822830	13822864	roo	21	18287	3.5	3.5	3.5	4.7	18321	chr3L	13804543	intergenic	not near genes	chr3L	13813704	intergenic	not near genes	chr3L	13822864	intergenic	not near genes	chr3L_21_13810001	chr3L_13810001	RC1_1-HE
1626	chr3L	14245565	14245594	chr3L	14245660	14245689	1360	10	95	10.5	6.5	8.5	1.1	124	chr3L	14245565	3` UTR	CR44561 -	chr3L	14245627	3` UTR	CR44561 -	chr3L	14245689	3` UTR	CR44561 -	chr3L_10_14245001	chr3L_14245001	RC1_1-HE
1630	chr3L	14295979	14296012	chr3L	14296466	14296508	roo	15	491	9.5	0.0	4.8	2.6	529	chr3L	14295979	intron	fz +	chr3L	14296244	intron	fz +	chr3L	14296508	intron	fz +	chr3L_15_14295001	chr3L_14295001	RC1_1-HE
1631	chr3L	14312023	14312058	chr3L	14316835	14316840	X-element	15	4811	2.5	2.5	2.5	4.3	4817	chr3L	14312023	exon	fz +	chr3L	14314432	intron	fz +	chr3L	14316840	intron	fz +	chr3L_15_14310001	chr3L_14310001	RC1_1-HE
1639	chr3L	14468445	14468478	chr3L	14473652	14473685	copia	15	5207	6.0	5.5	5.8	2.2	5240	chr3L	14468445	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473685	intron	bbg -	chr3L_15_14470001	chr3L_14470001	RC1_1-HE
1648	chr3L	14721180	14721202	chr3L	14723024	14723044	Rt1c	8	1844	7.0	2.5	4.8	1.4	1864	chr3L	14721180	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723044	intron	ome +	chr3L_8_14720001	chr3L_14720001	RC1_1-HE
1649	chr3L	14725599	14725617	chr3L	14728594	14728612	Doc	8	2995	2.0	9.0	5.5	1.2	3013	chr3L	14725599	intron	ome +	chr3L	14727106	intron	ome +	chr3L	14728612	intron	ome +	chr3L_8_14725001	chr3L_14725001	RC1_1-HE
1665	chr3L	15085047	15085082	chr3L	15086214	15086248	1360	10	1165	3.0	0.5	1.8	3.6	1201	chr3L	15085047	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086248	intron	cp309 -	chr3L_10_15085001	chr3L_15085001	RC1_1-HE
1674	chr3L	15295768	15295799	chr3L	15298612	15298643	gypsy5	14	2844	5.0	4.0	4.5	2.5	2875	chr3L	15295768	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298643	intergenic	Best4 +	chr3L_14_15295001	chr3L_15295001	RC1_1-HE
1675	chr3L	15423761	15423777	chr3L	15426606	15426622	opus	10	2845	5.5	5.5	5.5	1.5	2861	chr3L	15423761	intergenic	not near genes	chr3L	15425192	intergenic	not near genes	chr3L	15426622	intergenic	not near genes	chr3L_10_15425001	chr3L_15425001	RC1_1-HE
1681	chr3L	15554921	15554952	chr3L	15556709	15556740	S-element	11	1788	2.5	3.0	2.8	2.9	1819	chr3L	15554921	intron	AGO2 +	chr3L	15555830	intron	AGO2 +	chr3L	15556740	intron	AGO2 +	chr3L_11_15555001	chr3L_15555001	RC1_1-HE
1691	chr3L	15899224	15899262	chr3L	15899791	15899823	jockey	5	566	0.5	6.5	3.5	1.1	599	chr3L	15899224	intergenic	pHCl -	chr3L	15899524	intergenic	pHCl -	chr3L	15899823	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	RC1_1-HE
1700	chr3L	16184101	16184131	chr3L	16188921	16188951	X-element	13	4820	4.5	4.5	4.5	2.4	4850	chr3L	16184101	intergenic	not near genes	chr3L	16186526	intergenic	not near genes	chr3L	16188951	intergenic	not near genes	chr3L_13_16185001	chr3L_16185001	RC1_1-HE
1707	chr3L	16443850	16443878	chr3L	16446191	16446219	Doc	21	2341	7.5	13.0	10.2	1.9	2369	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445034	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446219	intron,intron	CG33158 +,dsx-c73A -	chr3L_21_16445001	chr3L_16445001	RC1_1-HE
1711	chr3L	16493973	16494012	chr3L	16494491	16494529	jockey	27	518	6.5	11.0	8.8	2.8	556	chr3L	16493973	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494251	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494529	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_27_16490001	chr3L_16490001	RC1_1-HE
1718	chr3L	16684022	16684052	chr3L	16689244	16689257	copia	5	5219	2.5	1.0	1.8	1.8	5235	chr3L	16684022	intron,intron	Lasp -,CG43954 -	chr3L	16686640	intron,intron	Lasp -,CG43954 -	chr3L	16689257	intron,intron	Lasp -,CG43954 -	chr3L_5_16685001	chr3L_16685001	RC1_1-HE
1728	chr3L	16945725	16945760	chr3L	16954879	16954914	roo	41	9152	10.0	4.0	7.0	5.1	9189	chr3L	16945725	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954914	5` UTR	Nc73EF +	chr3L_41_16950001	chr3L_16950001	RC1_1-HE
1729	chr3L	17034936	17034971	chr3L	17035125	17035146	G2	8	187	2.5	2.5	2.5	2.3	210	chr3L	17034936	intergenic	not near genes	chr3L	17035041	intergenic	not near genes	chr3L	17035146	intergenic	not near genes	chr3L_8_17035001	chr3L_17035001	RC1_1-HE
1730	chr3L	17085001	17085035	chr3L	17094151	17094185	roo	19	9149	7.5	8.0	7.8	2.2	9184	chr3L	17085001	intron	Rbp6 -	chr3L	17089593	intron	Rbp6 -	chr3L	17094185	intron	Rbp6 -	chr3L_19_17085001	chr3L_17085001	RC1_1-HE
1744	chr3L	17516983	17517011	chr3L	17524542	17524570	412	11	7559	4.0	6.0	5.0	1.8	7587	chr3L	17516983	intron	CG7564 +	chr3L	17520776	intron	CG7564 +	chr3L	17524570	3` UTR	CG7564 +	chr3L_11_17520001	chr3L_17520001	RC1_1-HE
1751	chr3L	17730742	17730777	chr3L	17738231	17738266	mdg1	11	7488	3.5	2.0	2.8	2.9	7524	chr3L	17730742	intron	Ccn +	chr3L	17734504	intron	Ccn +	chr3L	17738266	intron	Ccn +	chr3L_11_17730001	chr3L_17730001	RC1_1-HE
1757	chr3L	17799809	17799837	chr3L	17801597	17801625	S-element	9	1788	2.5	2.0	2.2	2.8	1816	chr3L	17799809	intron	NUCB1 -	chr3L	17800717	intron	NUCB1 -	chr3L	17801625	intron	NUCB1 -	chr3L_9_17800001	chr3L_17800001	RC1_1-HE
1763	chr3L	18047729	18047738	chr3L	18056787	18056796	roo	6	9058	2.0	5.0	3.5	1.3	9067	chr3L	18047729	intron	Eip75B -	chr3L	18052262	intron	Eip75B -	chr3L	18056796	intron	Eip75B -	chr3L_6_18050001	chr3L_18050001	RC1_1-HE
1780	chr3L	18506133	18506161	chr3L	18509597	18509625	F-element	19	3464	6.0	5.5	5.8	2.8	3492	chr3L	18506133	intergenic	not near genes	chr3L	18507879	intergenic	not near genes	chr3L	18509625	intergenic	not near genes	chr3L_19_18505001	chr3L_18505001	RC1_1-HE
1781	chr3L	18514903	18514937	chr3L	18520095	18520129	BS	14	5192	6.0	5.0	5.5	2.2	5226	chr3L	18514903	intergenic	not near genes	chr3L	18517516	intergenic	not near genes	chr3L	18520129	intergenic	not near genes	chr3L_14_18515001	chr3L_18515001	RC1_1-HE
1783	chr3L	18528637	18528656	chr3L	18537822	18537841	roo	13	9185	5.0	5.5	5.2	2.1	9204	chr3L	18528637	intergenic	not near genes	chr3L	18533239	intergenic	not near genes	chr3L	18537841	intergenic	not near genes	chr3L_13_18530001	chr3L_18530001	RC1_1-HE
1787	chr3L	18593945	18593981	chr3L	18595926	18595962	Doc	8	1981	1.5	1.5	1.5	3.2	2017	chr3L	18593945	intergenic	term -	chr3L	18594954	intergenic	not near genes	chr3L	18595962	intergenic	CR45389 +	chr3L_8_18590001	chr3L_18590001	RC1_1-HE
1790	chr3L	18710756	18710792	chr3L	18718709	18718745	Stalker2	15	7953	3.5	4.5	4.0	3.0	7989	chr3L	18710756	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718745	intergenic	not near genes	chr3L_15_18710001	chr3L_18710001	RC1_1-HE
1794	chr3L	18772405	18772436	chr3L	18781087	18781118	roo	4	8682	4.0	3.0	3.5	0.9	8713	chr3L	18772405	intron	ftz-f1 -	chr3L	18776762	intron	ftz-f1 -	chr3L	18781118	intron	ftz-f1 -	chr3L_4_18775001	chr3L_18775001	RC1_1-HE
1798	chr3L	18833777	18833810	chr3L	18834942	18834975	1360	10	1165	1.5	4.5	3.0	2.5	1198	chr3L	18833777	intron	Indy -	chr3L	18834376	intron	Indy -	chr3L	18834975	intron	Indy -	chr3L_10_18830001	chr3L_18830001	RC1_1-HE
1802	chr3L	19008830	19008873	chr3L	19009174	19009212	jockey	20	340	0.0	4.0	2.0	6.7	382	chr3L	19008830	intron	nkd -	chr3L	19009021	intron	nkd -	chr3L	19009212	intron	nkd -	chr3L_20_19005001	chr3L_19005001	RC1_1-HE
1807	chr3L	19115636	19115662	chr3L	19115815	19115841	BS	5	179	7.5	4.0	5.8	0.7	205	chr3L	19115636	intron	CG14082 -	chr3L	19115738	intron	CG14082 -	chr3L	19115841	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	RC1_1-HE
1808	chr3L	19117051	19117070	chr3L	19124494	19124518	mdg1	9	7447	6.0	8.0	7.0	1.1	7467	chr3L	19117051	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124518	intron	CG14082 -	chr3L_9_19120001	chr3L_19120001	RC1_1-HE
1813	chr3L	19208057	19208087	chr3L	19209432	19209462	Doc	17	1375	8.5	4.5	6.5	2.3	1405	chr3L	19208057	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209462	intron	fz2 -	chr3L_17_19205001	chr3L_19205001	RC1_1-HE
1831	chr3L	19820301	19820316	chr3L	19827851	19827866	412	6	7550	6.0	4.0	5.0	1.0	7565	chr3L	19820301	intron	Deaf1 +	chr3L	19824084	intron	Deaf1 +	chr3L	19827866	intron	Deaf1 +	chr3L_6_19820001	chr3L_19820001	RC1_1-HE
1832	chr3L	19861831	19861848	chr3L	19863620	19863637	S-element	4	1789	2.0	1.5	1.8	1.4	1806	chr3L	19861831	5` UTR	CR45433 +	chr3L	19862734	intergenic	not near genes	chr3L	19863637	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RC1_1-HE
1837	chr3L	20113660	20113679	chr3L	20122918	20122937	roo	5	9258	3.0	2.0	2.5	1.4	9277	chr3L	20113660	intergenic	not near genes	chr3L	20118298	intergenic	not near genes	chr3L	20122937	intergenic	not near genes	chr3L_5_20115001	chr3L_20115001	RC1_1-HE
1842	chr3L	20257332	20257357	chr3L	20258453	20258478	pogo	13	1121	3.5	8.0	5.8	1.9	1146	chr3L	20257332	intron	rdgC +	chr3L	20257905	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_13_20255001	chr3L_20255001	RC1_1-HE
1846	chr3L	20476755	20476773	chr3L	20484355	20484373	springer	5	7600	5.5	1.0	3.2	1.2	7618	chr3L	20476755	3` UTR	isoQC +	chr3L	20480564	intergenic	not near genes	chr3L	20484373	3` UTR	ZnT77C -	chr3L_5_20480001	chr3L_20480001	RC1_1-HE
1847	chr3L	20476774	20476786	chr3L	20484352	20484386	springer	5	7596	4.0	0.5	2.2	1.6	7612	chr3L	20476774	3` UTR	isoQC +	chr3L	20480580	intergenic	not near genes	chr3L	20484386	3` UTR	ZnT77C -	chr3L_5_20480001	chr3L_20480001	RC1_1-HE
1854	chr3L	20590062	20590076	chr3L	20590602	20590616	412	7	540	9.0	4.5	6.8	0.9	554	chr3L	20590062	intergenic	not near genes	chr3L	20590339	intergenic	not near genes	chr3L	20590616	intergenic	not near genes	chr3L_7_20590001	chr3L_20590001	RC1_1-HE
1855	chr3L	20590077	20590096	chr3L	20590601	20590636	412	6	537	4.5	4.5	4.5	1.1	559	chr3L	20590077	intergenic	not near genes	chr3L	20590356	intergenic	not near genes	chr3L	20590636	intergenic	not near genes	chr3L_6_20590001	chr3L_20590001	RC1_1-HE
1860	chr3L	20821292	20821294	chr3L	20824762	20824764	NOF	4	3470	4.0	5.0	4.5	0.7	3472	chr3L	20821292	intron	Pka-R1 +	chr3L	20823028	intron	Pka-R1 +	chr3L	20824764	intron	Pka-R1 +	chr3L_4_20820001	chr3L_20820001	RC1_1-HE
1867	chr3L	21014914	21014944	chr3L	21023396	21023426	Tirant	11	8482	4.5	10.5	7.5	1.3	8512	chr3L	21014914	intron	skd -	chr3L	21019170	intron	skd -	chr3L	21023426	intron	skd -	chr3L_11_21015001	chr3L_21015001	RC1_1-HE
1868	chr3L	21151861	21151894	chr3L	21156946	21156979	flea	19	5084	6.0	2.0	4.0	3.8	5118	chr3L	21151861	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156979	intron	Ac78C -	chr3L_19_21150001	chr3L_21150001	RC1_1-HE
1871	chr3L	21306147	21306179	chr3L	21315307	21315339	roo	7	9160	3.5	3.5	3.5	1.6	9192	chr3L	21306147	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310743	intron	Pc -	chr3L	21315339	3` UTR	Pc -	chr3L_7_21310001	chr3L_21310001	RC1_1-HE
1872	chr3L	21372719	21372749	chr3L	21379228	21379258	McClintock	15	6509	8.0	4.0	6.0	2.1	6539	chr3L	21372719	intergenic	not near genes	chr3L	21375988	intergenic	not near genes	chr3L	21379258	intergenic	not near genes	chr3L_15_21375001	chr3L_21375001	RC1_1-HE
1875	chr3L	21498837	21498867	chr3L	21500474	21500504	1360	12	1636	4.0	8.0	6.0	1.7	1667	chr3L	21498837	intron	Glg1 -	chr3L	21499670	intron	Glg1 -	chr3L	21500504	intron	Glg1 -	chr3L_12_21495001	chr3L_21495001	RC1_1-HE
1877	chr3L	21749318	21749350	chr3L	21754478	21754502	Doc	8	5158	1.5	2.0	1.8	2.9	5184	chr3L	21749318	intron	Syn1 -	chr3L	21751910	intron	Syn1 -	chr3L	21754502	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RC1_1-HE
1888	chr3L	22099673	22099702	chr3L	22105860	22105872	3S18	13	6186	5.0	6.5	5.8	1.9	6199	chr3L	22099673	intergenic	not near genes	chr3L	22102772	intergenic	not near genes	chr3L	22105872	intergenic	not near genes	chr3L_13_22100001	chr3L_22100001	RC1_1-HE
1898	chr3L	22555772	22555801	chr3L	22563243	22563272	blood	16	7470	3.0	2.5	2.8	4.2	7500	chr3L	22555772	intergenic	not near genes	chr3L	22559522	intergenic	not near genes	chr3L	22563272	intergenic	not near genes	chr3L_16_22555001	chr3L_22555001	RC1_1-HE
1899	chr3L	22555638	22555664	chr3L	22565371	22565397	blood	11	9733	33.5	38.5	36.0	0.3	9759	chr3L	22555638	intergenic	not near genes	chr3L	22560518	intergenic	not near genes	chr3L	22565397	intergenic	not near genes	chr3L_11_22560001	chr3L_22560001	RC1_1-HE
1900	chr3L	22577623	22577648	chr3L	22582412	22582435	Doc	14	4788	6.0	6.0	6.0	2.0	4812	chr3L	22577623	intergenic	not near genes	chr3L	22580029	intergenic	not near genes	chr3L	22582435	3` UTR	CG14459 -	chr3L_14_22580001	chr3L_22580001	RC1_1-HE
1901	chr3L	22617188	22617218	chr3L	22624641	22624671	blood	14	7453	2.5	2.5	2.5	4.0	7483	chr3L	22617188	intron	CG14459 -	chr3L	22620930	intron	CG14459 -	chr3L	22624671	intron	CG14459 -	chr3L_14_22620001	chr3L_22620001	RC1_1-HE
1903	chr3L	22761386	22761418	chr3L	22766821	22766853	Ivk	11	5435	6.0	3.5	4.8	1.9	5467	chr3L	22761386	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_11_22760001	chr3L_22760001	RC1_1-HE
1904	chr3L	22865997	22866016	chr3L	22867116	22867119	Doc	6	1126	2.0	3.0	2.5	1.7	1122	chr3L	22865997	intron	CG33170 +	chr3L	22866558	intron	CG33170 +	chr3L	22867119	intron	CG33170 +	chr3L_6_22865001	chr3L_22865001	RC1_1-HE
1908	chr3L	22989860	22989894	chr3L	22996835	22996868	297	12	6975	1.5	3.0	2.2	3.8	7008	chr3L	22989860	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996868	intergenic	not near genes	chr3L_12_22990001	chr3L_22990001	RC1_1-HE
1910	chr3L	23042223	23042255	chr3L	23048977	23049009	gypsy6	9	6754	3.0	3.0	3.0	2.2	6786	chr3L	23042223	intergenic	not near genes	chr3L	23045616	intergenic	not near genes	chr3L	23049009	intergenic	not near genes	chr3L_9_23045001	chr3L_23045001	RC1_1-HE
1921	chr3L	24021277	24021310	chr3L	24022434	24022468	1360	5	1158	1.5	0.5	1.0	2.5	1191	chr3L	24021277	intergenic	not near genes	chr3L	24021872	intergenic	not near genes	chr3L	24022468	intergenic	not near genes	chr3L_5_24020001	chr3L_24020001	RC1_1-HE
1922	chr3L	24168785	24168810	chr3L	24176114	24176138	ZAM	9	7329	7.0	3.5	5.2	1.5	7353	chr3L	24168785	intron	Snap25 +	chr3L	24172462	intron	Snap25 +	chr3L	24176138	intron	Snap25 +	chr3L_9_24170001	chr3L_24170001	RC1_1-HE
1927	chr3L	25455344	25455354	chr3L	25455943	25455945	INE-1	6	598	1.5	4.5	3.0	1.5	601	chr3L	25455344	intergenic	not near genes	chr3L	25455644	intergenic	not near genes	chr3L	25455945	intergenic	not near genes	chr3L_6_25455001	chr3L_25455001	RC1_1-HE
1928	chr3L	25628504	25628528	chr3L	25633276	25633300	F-element	12	4771	2.0	1.5	1.8	4.3	4796	chr3L	25628504	intron	CG41343 -	chr3L	25630902	intron	CG41343 -	chr3L	25633300	intron	CG41343 -	chr3L_12_25630001	chr3L_25630001	RC1_1-HE
1941	chr3R	4206071	4206103	chr3R	4211647	4211679	mdg3	6	5576	2.5	2.5	2.5	1.7	5608	chr3R	4206071	intron	CG14636 -	chr3R	4208875	intron	CG14636 -	chr3R	4211679	intron	CG14636 -	chr3R_6_4205001	chr3R_4205001	RC1_1-HE
1943	chr3R	4366757	4366790	chr3R	4375141	4375174	roo	10	8382	3.5	2.5	3.0	2.5	8417	chr3R	4366757	3` UTR	CG1090 +	chr3R	4370966	intergenic	not near genes	chr3R	4375174	5` UTR	CR44922 +	chr3R_10_4370001	chr3R_4370001	RC1_1-HE
1946	chr3R	4538900	4538910	chr3R	4540161	4540171	1360	9	1261	3.0	11.5	7.2	1.1	1271	chr3R	4538900	intron	CG34357 -	chr3R	4539536	intron	CG34357 -	chr3R	4540171	intron	CG34357 -	chr3R_9_4535001	chr3R_4535001	RC1_1-HE
1949	chr3R	4609545	4609581	chr3R	4610710	4610746	1360	14	1165	4.5	3.5	4.0	2.8	1201	chr3R	4609545	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610746	intergenic	not near genes	chr3R_14_4610001	chr3R_4610001	RC1_1-HE
1950	chr3R	4636597	4636619	chr3R	4637018	4637040	INE-1	8	421	4.0	4.5	4.2	1.5	443	chr3R	4636597	intergenic	not near genes	chr3R	4636818	intergenic	not near genes	chr3R	4637040	intergenic	not near genes	chr3R_8_4635001	chr3R_4635001	RC1_1-HE
1951	chr3R	4753240	4753260	chr3R	4757544	4757564	F-element	11	4304	6.0	6.0	6.0	1.6	4324	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755402	intron,intron	atms +,CG44098 -	chr3R	4757564	intron,exon	atms +,CG44098 -	chr3R_11_4755001	chr3R_4755001	RC1_1-HE
1952	chr3R	4759723	4759742	chr3R	4761221	4761240	hopper2	9	1498	5.0	4.5	4.8	1.6	1517	chr3R	4759723	intron,intron	atms +,CG44098 -	chr3R	4760482	intron,intron	atms +,CG44098 -	chr3R	4761240	intron,intron	atms +,CG44098 -	chr3R_9_4760001	chr3R_4760001	RC1_1-HE
1957	chr3R	4887482	4887509	chr3R	4894858	4894887	rover	9	7378	3.5	7.0	5.2	1.5	7405	chr3R	4887482	intergenic	not near genes	chr3R	4891184	intergenic	not near genes	chr3R	4894887	intergenic	not near genes	chr3R_9_4890001	chr3R_4890001	RC1_1-HE
1965	chr3R	5045844	5045878	chr3R	5052947	5052981	HMS-Beagle	11	7103	7.5	4.5	6.0	1.6	7137	chr3R	5045844	intron	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5052981	intergenic	CR45588 -	chr3R_11_5045001	chr3R_5045001	RC1_1-HE
1967	chr3R	5067980	5068013	chr3R	5073498	5073531	mdg3	17	5518	5.0	6.0	5.5	2.6	5551	chr3R	5067980	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073531	intergenic	not near genes	chr3R_17_5070001	chr3R_5070001	RC1_1-HE
1975	chr3R	5338396	5338428	chr3R	5343574	5343606	Rt1c	23	5178	8.5	10.5	9.5	2.2	5210	chr3R	5338396	intron	mtd -	chr3R	5341001	intron	mtd -	chr3R	5343606	intron	mtd -	chr3R_23_5340001	chr3R_5340001	RC1_1-HE
1976	chr3R	5445970	5445994	chr3R	5452431	5452455	Burdock	9	6460	1.5	3.5	2.5	2.6	6485	chr3R	5445970	intron	CG14669 +	chr3R	5449212	intron	CG14669 +	chr3R	5452455	intron	CG14669 +	chr3R_9_5445001	chr3R_5445001	RC1_1-HE
1980	chr3R	5746015	5746041	chr3R	5746257	5746283	pogo	4	242	1.0	4.5	2.8	1.1	268	chr3R	5746015	3` UTR	Madm +	chr3R	5746149	3` UTR	Madm +	chr3R	5746283	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RC1_1-HE
1982	chr3R	5809111	5809145	chr3R	5809353	5809387	pogo	15	242	2.0	2.5	2.2	4.7	276	chr3R	5809111	3` UTR	CG11000 +	chr3R	5809249	3` UTR	CG11000 +	chr3R	5809387	3` UTR	CG11000 +	chr3R_15_5805001	chr3R_5805001	RC1_1-HE
1985	chr3R	6015959	6015994	chr3R	6024441	6024476	Tirant	9	8481	3.0	2.5	2.8	2.4	8517	chr3R	6015959	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_9_6020001	chr3R_6020001	RC1_1-HE
1994	chr3R	6158513	6158538	chr3R	6167097	6167122	Tirant	10	8582	3.0	4.5	3.8	2.1	8609	chr3R	6158513	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167122	intergenic	CG1077 +	chr3R_10_6160001	chr3R_6160001	RC1_1-HE
1995	chr3R	6175171	6175199	chr3R	6182444	6182472	HMS-Beagle2	8	7273	3.5	2.5	3.0	2.0	7301	chr3R	6175171	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182472	intergenic	CR45194 +	chr3R_8_6175001	chr3R_6175001	RC1_1-HE
1996	chr3R	6206282	6206318	chr3R	6206500	6206536	BS	14	218	3.5	6.0	4.8	2.4	254	chr3R	6206282	exon	Osi24 +	chr3R	6206409	intron	Osi24 +	chr3R	6206536	intron	Osi24 +	chr3R_14_6205001	chr3R_6205001	RC1_1-HE
1999	chr3R	6510022	6510055	chr3R	6515104	6515137	jockey	13	5082	2.0	2.5	2.2	4.1	5115	chr3R	6510022	intergenic	not near genes	chr3R	6512580	intergenic	not near genes	chr3R	6515137	intergenic	not near genes	chr3R_13_6510001	chr3R_6510001	RC1_1-HE
2011	chr3R	6737500	6737531	chr3R	6739287	6739319	Doc	15	1788	2.0	5.5	3.8	3.1	1819	chr3R	6737500	intron	pb -	chr3R	6738410	intron	pb -	chr3R	6739319	intron	pb -	chr3R_15_6735001	chr3R_6735001	RC1_1-HE
2039	chr3R	7694576	7694609	chr3R	7713638	7713671	invader3	12	19062	2.5	4.0	3.2	2.9	19095	chr3R	7694576	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713671	intergenic	not near genes	chr3R_12_7700001	chr3R_7700001	RC1_1-HE
2040	chr3R	7729465	7729498	chr3R	7737404	7737437	Stalker2	13	7938	4.5	10.0	7.2	1.6	7972	chr3R	7729465	intergenic	not near genes	chr3R	7733451	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_13_7730001	chr3R_7730001	RC1_1-HE
2042	chr3R	7849641	7849669	chr3R	7850809	7850837	1360	7	1168	1.0	3.5	2.2	2.2	1196	chr3R	7849641	intron	CG34384 +	chr3R	7850239	intron	CG34384 +	chr3R	7850837	intron	CG34384 +	chr3R_7_7850001	chr3R_7850001	RC1_1-HE
2043	chr3R	7973314	7973344	chr3R	7974377	7974407	1360	13	1063	5.5	4.0	4.8	2.2	1093	chr3R	7973314	intergenic	not near genes	chr3R	7973860	intergenic	not near genes	chr3R	7974407	intergenic	CD98hc -	chr3R_13_7970001	chr3R_7970001	RC1_1-HE
2047	chr3R	8090564	8090571	chr3R	8094042	8094049	297	5	3478	5.0	12.5	8.8	0.5	3485	chr3R	8090564	intergenic	CR44330 +	chr3R	8092306	intergenic	not near genes	chr3R	8094049	intergenic	CG7900 +	chr3R_5_8090001	chr3R_8090001	RC1_1-HE
2048	chr3R	8094406	8094441	chr3R	8099712	8099747	Transpac	15	5306	4.0	3.5	3.8	3.1	5341	chr3R	8094406	intron	CG7900 +	chr3R	8097076	intron	CG7900 +	chr3R	8099747	intron	CG7900 +	chr3R_15_8095001	chr3R_8095001	RC1_1-HE
2049	chr3R	8101762	8101791	chr3R	8104847	8104876	G2	15	3085	8.0	4.0	6.0	2.1	3114	chr3R	8101762	exon	CG7900 +	chr3R	8103319	intron	CG7900 +	chr3R	8104876	3` UTR	CG7900 +	chr3R_15_8100001	chr3R_8100001	RC1_1-HE
2051	chr3R	8207564	8207585	chr3R	8208410	8208431	F-element	4	846	1.5	5.0	3.2	1.0	867	chr3R	8207564	intergenic	not near genes	chr3R	8207998	intergenic	not near genes	chr3R	8208431	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	RC1_1-HE
2053	chr3R	8403004	8403041	chr3R	8412171	8412208	roo	39	9167	9.5	10.0	9.8	3.6	9204	chr3R	8403004	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412208	intron	CG45263 -	chr3R_39_8405001	chr3R_8405001	RC1_1-HE
2058	chr3R	8570478	8570505	chr3R	8575115	8575142	HMS-Beagle	5	4637	3.5	1.5	2.5	1.4	4664	chr3R	8570478	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575142	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	RC1_1-HE
2061	chr3R	8601772	8601797	chr3R	8610920	8610951	roo	17	9154	6.0	4.0	5.0	2.8	9179	chr3R	8601772	intron	5-HT2B +	chr3R	8606362	intron	5-HT2B +	chr3R	8610951	intron	5-HT2B +	chr3R_17_8605001	chr3R_8605001	RC1_1-HE
2063	chr3R	8707359	8707379	chr3R	8709801	8709821	jockey	13	2442	8.0	11.5	9.8	1.2	2462	chr3R	8707359	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709821	intergenic	not near genes	chr3R_13_8705001	chr3R_8705001	RC1_1-HE
2064	chr3R	8707380	8707384	chr3R	8709797	8709826	jockey	7	2438	6.5	11.0	8.8	0.7	2446	chr3R	8707380	intergenic	not near genes	chr3R	8708603	intergenic	not near genes	chr3R	8709826	intergenic	not near genes	chr3R_7_8705001	chr3R_8705001	RC1_1-HE
2067	chr3R	8894867	8894906	chr3R	8896024	8896063	1360	17	1157	4.5	4.0	4.2	3.3	1196	chr3R	8894867	intron	pyd -	chr3R	8895465	intron	pyd -	chr3R	8896063	intron	pyd -	chr3R_17_8895001	chr3R_8895001	RC1_1-HE
2076	chr3R	9278781	9278810	chr3R	9284042	9284071	Rt1a	10	5261	6.5	5.0	5.8	1.5	5290	chr3R	9278781	intergenic	not near genes	chr3R	9281426	intergenic	not near genes	chr3R	9284071	intergenic	not near genes	chr3R_10_9280001	chr3R_9280001	RC1_1-HE
2077	chr3R	9304531	9304539	chr3R	9311819	9311827	Stalker4	5	7288	11.5	4.0	7.8	0.6	7296	chr3R	9304531	intron	CG8861 -	chr3R	9308179	intron	CG8861 -	chr3R	9311827	intron	CG8861 -	chr3R_5_9305001	chr3R_9305001	RC1_1-HE
2080	chr3R	9319578	9319607	chr3R	9320014	9320043	jockey	15	436	5.0	7.0	6.0	2.1	465	chr3R	9319578	intron	CG8861 -	chr3R	9319810	intron	CG8861 -	chr3R	9320043	intron	CG8861 -	chr3R_15_9315001	chr3R_9315001	RC1_1-HE
2082	chr3R	9361815	9361844	chr3R	9362057	9362086	pogo	12	242	1.0	3.0	2.0	4.0	271	chr3R	9361815	3` UTR	CG45050 +	chr3R	9361950	3` UTR	CG45050 +	chr3R	9362086	3` UTR	CG45050 +	chr3R_12_9360001	chr3R_9360001	RC1_1-HE
2087	chr3R	9699971	9700001	chr3R	9700061	9700091	1360	15	89	9.0	6.5	7.8	1.7	120	chr3R	9699971	intron	Unc-115a -	chr3R	9700031	intron	Unc-115a -	chr3R	9700091	intron	Unc-115a -	chr3R_15_9700001	chr3R_9700001	RC1_1-HE
2091	chr3R	10231780	10231814	chr3R	10237358	10237392	mdg3	13	5578	2.5	4.0	3.2	3.1	5612	chr3R	10231780	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237392	intron	CG42795 +	chr3R_13_10230001	chr3R_10230001	RC1_1-HE
2096	chr3R	10804185	10804207	chr3R	10811718	10811739	17.6	10	7533	0.5	2.0	1.2	4.5	7554	chr3R	10804185	intergenic	CG14692 -	chr3R	10807962	intergenic	not near genes	chr3R	10811739	3` UTR	CG14693 -	chr3R_10_10805001	chr3R_10805001	RC1_1-HE
2104	chr3R	11065587	11065613	chr3R	11071244	11071246	297	5	5651	3.0	2.0	2.5	1.4	5659	chr3R	11065587	intergenic	not near genes	chr3R	11068416	intergenic	not near genes	chr3R	11071246	intergenic	not near genes	chr3R_5_11065001	chr3R_11065001	RC1_1-HE
2120	chr3R	11379235	11379266	chr3R	11388391	11388422	roo	21	9156	6.5	6.5	6.5	2.8	9187	chr3R	11379235	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388422	intron	pros +	chr3R_21_11380001	chr3R_11380001	RC1_1-HE
2128	chr3R	11841058	11841094	chr3R	11846250	11846286	BS	16	5191	7.0	3.5	5.2	2.6	5228	chr3R	11841058	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846286	intron	CG6959 -	chr3R_16_11840001	chr3R_11840001	RC1_1-HE
2132	chr3R	12022883	12022916	chr3R	12025061	12025094	pogo	6	2178	3.0	3.5	3.2	1.4	2211	chr3R	12022883	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025094	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RC1_1-HE
2152	chr3R	12920151	12920184	chr3R	12925355	12925373	copia	22	5200	6.5	6.5	6.5	2.9	5222	chr3R	12920151	intron	beat-Vb +	chr3R	12922762	intron	beat-Vb +	chr3R	12925373	intron	beat-Vb +	chr3R_22_12920001	chr3R_12920001	RC1_1-HE
2158	chr3R	13143042	13143066	chr3R	13148619	13148643	mdg3	9	5577	2.5	8.5	5.5	1.4	5601	chr3R	13143042	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145842	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148643	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13145001	chr3R_13145001	RC1_1-HE
2180	chr3R	14021639	14021662	chr3R	14023465	14023488	S-element	13	1826	6.0	4.0	5.0	2.2	1849	chr3R	14021639	intron	rdx -	chr3R	14022564	intron	rdx -	chr3R	14023488	intron	rdx -	chr3R_13_14020001	chr3R_14020001	RC1_1-HE
2186	chr3R	14180810	14180843	chr3R	14185576	14185609	F-element	9	4764	5.5	8.0	6.8	1.2	4799	chr3R	14180810	intron	Dop1R1 -	chr3R	14183210	intron	Dop1R1 -	chr3R	14185609	intron	Dop1R1 -	chr3R_9_14180001	chr3R_14180001	RC1_1-HE
2188	chr3R	14246393	14246416	chr3R	14247890	14247913	jockey	7	1494	3.5	2.5	3.0	1.8	1520	chr3R	14246393	intergenic	not near genes	chr3R	14247153	intergenic	not near genes	chr3R	14247913	intergenic	not near genes	chr3R_7_14245001	chr3R_14245001	RC1_1-HE
2214	chr3R	15041429	15041458	chr3R	15045198	15045227	Doc	10	3769	2.0	4.5	3.2	2.4	3798	chr3R	15041429	intergenic	not near genes	chr3R	15043328	intergenic	not near genes	chr3R	15045227	intergenic	not near genes	chr3R_10_15040001	chr3R_15040001	RC1_1-HE
2216	chr3R	15079806	15079839	chr3R	15080048	15080081	pogo	8	242	2.5	4.0	3.2	1.9	275	chr3R	15079806	3` UTR	CG6966 -	chr3R	15079944	3` UTR	CG6966 -	chr3R	15080081	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	RC1_1-HE
2217	chr3R	15102525	15102530	chr3R	15109780	15109785	412	4	7255	2.5	6.5	4.5	0.7	7260	chr3R	15102525	intron	CG42788 -	chr3R	15106155	intron	CG42788 -	chr3R	15109785	intron	CG42788 -	chr3R_4_15105001	chr3R_15105001	RC1_1-HE
2219	chr3R	15132063	15132085	chr3R	15135124	15135146	Juan	12	3061	10.5	12.5	11.5	1.0	3083	chr3R	15132063	intergenic	CG42788 -	chr3R	15133604	intergenic	not near genes	chr3R	15135146	3` UTR	CG6912 -	chr3R_12_15130001	chr3R_15130001	RC1_1-HE
2221	chr3R	15162540	15162562	chr3R	15167309	15167330	F-element	5	4768	4.5	0.0	2.2	1.6	4790	chr3R	15162540	intron	Gyc88E +	chr3R	15164935	intron	Gyc88E +	chr3R	15167330	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	RC1_1-HE
2229	chr3R	15601163	15601196	chr3R	15608686	15608719	412	16	7523	5.5	7.0	6.2	2.2	7556	chr3R	15601163	intergenic	not near genes	chr3R	15604941	intergenic	not near genes	chr3R	15608719	intergenic	not near genes	chr3R_16_15600001	chr3R_15600001	RC1_1-HE
2230	chr3R	15618728	15618763	chr3R	15626203	15626238	blood	13	7475	2.5	6.5	4.5	2.4	7510	chr3R	15618728	intergenic	not near genes	chr3R	15622483	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_13_15620001	chr3R_15620001	RC1_1-HE
2249	chr3R	16189413	16189441	chr3R	16189817	16189845	invader4	8	404	5.5	4.5	5.0	1.3	432	chr3R	16189413	intron	sra +	chr3R	16189629	intron	sra +	chr3R	16189845	intron	sra +	chr3R_8_16185001	chr3R_16185001	RC1_1-HE
2265	chr3R	16756319	16756353	chr3R	16762511	16762545	diver	11	6192	3.5	2.0	2.8	2.9	6226	chr3R	16756319	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762545	intron	bxd -	chr3R_11_16755001	chr3R_16755001	RC1_1-HE
2276	chr3R	17294666	17294693	chr3R	17295095	17295122	BS	10	429	2.0	4.5	3.2	2.4	456	chr3R	17294666	intergenic	not near genes	chr3R	17294894	intergenic	not near genes	chr3R	17295122	intergenic	not near genes	chr3R_10_17290001	chr3R_17290001	RC1_1-HE
2277	chr3R	17346680	17346720	chr3R	17348244	17348284	F-element	15	1564	0.5	5.5	3.0	3.8	1604	chr3R	17346680	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348284	intron	beat-IIa -	chr3R_15_17345001	chr3R_17345001	RC1_1-HE
2287	chr3R	17591290	17591321	chr3R	17591726	17591758	F-element	7	437	4.5	2.5	3.5	1.6	468	chr3R	17591290	intergenic	not near genes	chr3R	17591524	intergenic	not near genes	chr3R	17591758	intergenic	not near genes	chr3R_7_17590001	chr3R_17590001	RC1_1-HE
2301	chr3R	17925854	17925889	chr3R	17927322	17927357	hobo	22	1466	6.0	9.5	7.8	2.5	1503	chr3R	17925854	intron	cpo +	chr3R	17926606	intron	cpo +	chr3R	17927357	intron	cpo +	chr3R_22_17925001	chr3R_17925001	RC1_1-HE
2360	chr3R	20109539	20109562	chr3R	20114746	20114769	copia	16	5206	5.0	5.0	5.0	2.7	5230	chr3R	20109539	intergenic	not near genes	chr3R	20112154	intergenic	not near genes	chr3R	20114769	intergenic	CG10887 +	chr3R_16_20110001	chr3R_20110001	RC1_1-HE
2361	chr3R	20156691	20156720	chr3R	20165862	20165891	roo	7	9169	5.0	3.0	4.0	1.4	9200	chr3R	20156691	intergenic	not near genes	chr3R	20161291	intergenic	not near genes	chr3R	20165891	intergenic	not near genes	chr3R_7_20160001	chr3R_20160001	RC1_1-HE
2364	chr3R	20245277	20245301	chr3R	20248888	20248912	F-element	6	3611	0.0	3.0	1.5	2.4	3635	chr3R	20245277	3` UTR	Nlg4 +	chr3R	20247094	intergenic	not near genes	chr3R	20248912	intergenic	not near genes	chr3R_6_20245001	chr3R_20245001	RC1_1-HE
2368	chr3R	20266513	20266548	chr3R	20272985	20273020	Burdock	20	6471	1.5	6.5	4.0	4.0	6507	chr3R	20266513	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273020	intron	cic +	chr3R_20_20265001	chr3R_20265001	RC1_1-HE
2370	chr3R	20331004	20331027	chr3R	20331491	20331514	roo	8	487	5.0	3.0	4.0	1.6	510	chr3R	20331004	intergenic	Sirt2 +	chr3R	20331259	intergenic	Sirt2 +	chr3R	20331514	intergenic	not near genes	chr3R_8_20330001	chr3R_20330001	RC1_1-HE
2371	chr3R	20506586	20506616	chr3R	20507390	20507419	BS	12	804	3.0	5.0	4.0	2.4	833	chr3R	20506586	intergenic	Or92a +	chr3R	20507002	intergenic	CG4288 -	chr3R	20507419	3` UTR	CG4288 -	chr3R_12_20505001	chr3R_20505001	RC1_1-HE
2390	chr3R	21141671	21141691	chr3R	21150153	21150173	Tirant	10	8482	7.5	3.5	5.5	1.5	8502	chr3R	21141671	intron	SNF4Agamma +	chr3R	21145922	intron	SNF4Agamma +	chr3R	21150173	intron	SNF4Agamma +	chr3R_10_21145001	chr3R_21145001	RC1_1-HE
2402	chr3R	21609007	21609040	chr3R	21611636	21611649	NOF	14	2630	6.0	6.0	6.0	2.0	2642	chr3R	21609007	intron	InR -	chr3R	21610328	intron	InR -	chr3R	21611649	intron	InR -	chr3R_14_21610001	chr3R_21610001	RC1_1-HE
2406	chr3R	21761127	21761155	chr3R	21768520	21768548	mdg1	9	7393	4.0	5.0	4.5	1.6	7421	chr3R	21761127	exon	CG42335 +	chr3R	21764838	intron	CG42335 +	chr3R	21768548	exon	CG42335 +	chr3R_9_21760001	chr3R_21760001	RC1_1-HE
2417	chr3R	22234707	22234715	chr3R	22236027	22236035	pogo	4	1320	0.0	0.0	0.0	4.0	1328	chr3R	22234707	intron	SKIP +	chr3R	22235371	intron	SKIP +	chr3R	22236035	intron	SKIP +	chr3R_4_22235001	chr3R_22235001	RC1_1-HE
2418	chr3R	22239490	22239500	chr3R	22248551	22248561	roo	4	9061	6.0	0.5	3.2	1.0	9071	chr3R	22239490	intron	SKIP +	chr3R	22244026	intron	SKIP +	chr3R	22248561	intron	SKIP +	chr3R_4_22240001	chr3R_22240001	RC1_1-HE
2420	chr3R	22450552	22450577	chr3R	22453193	22453218	NOF	10	2639	8.0	9.5	8.8	1.0	2666	chr3R	22450552	intron	CG34376 +	chr3R	22451885	intron	CG34376 +	chr3R	22453218	intron	CG34376 +	chr3R_10_22450001	chr3R_22450001	RC1_1-HE
2452	chr3R	23558414	23558429	chr3R	23560196	23560211	Bari1	8	1782	0.0	11.0	5.5	1.2	1797	chr3R	23558414	intron	beat-IV +	chr3R	23559312	intron	beat-IV +	chr3R	23560211	intron	beat-IV +	chr3R_8_23555001	chr3R_23555001	RC1_1-HE
2456	chr3R	23684697	23684728	chr3R	23685184	23685215	roo	17	485	4.5	10.5	7.5	2.0	518	chr3R	23684697	exon	CG18754 +	chr3R	23684956	intron	CG18754 +	chr3R	23685215	exon	CG18754 +	chr3R_17_23680001	chr3R_23680001	RC1_1-HE
2459	chr3R	23835402	23835435	chr3R	23844553	23844586	roo	11	9151	6.0	6.0	6.0	1.6	9184	chr3R	23835402	intron	CG34355 +	chr3R	23839994	intron	CG34355 +	chr3R	23844586	intron	CG34355 +	chr3R_11_23835001	chr3R_23835001	RC1_1-HE
2470	chr3R	24072085	24072118	chr3R	24072524	24072550	jockey	16	438	7.5	8.0	7.8	1.8	465	chr3R	24072085	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072550	intron	4EHP -	chr3R_16_24070001	chr3R_24070001	RC1_1-HE
2471	chr3R	24076917	24076937	chr3R	24078383	24078405	hobo	8	1468	5.0	4.0	4.5	1.5	1488	chr3R	24076917	intron	4EHP -	chr3R	24077661	intron	4EHP -	chr3R	24078405	intron	4EHP -	chr3R_8_24075001	chr3R_24075001	RC1_1-HE
2476	chr3R	24207216	24207241	chr3R	24212293	24212318	flea	5	5077	5.0	6.5	5.8	0.7	5102	chr3R	24207216	intron	twin -	chr3R	24209767	intron	twin -	chr3R	24212318	intron	twin -	chr3R_5_24205001	chr3R_24205001	RC1_1-HE
2479	chr3R	24493281	24493309	chr3R	24493501	24493539	BS	19	229	4.5	7.5	6.0	2.7	258	chr3R	24493281	intergenic	not near genes	chr3R	24493410	intergenic	not near genes	chr3R	24493539	intergenic	not near genes	chr3R_19_24490001	chr3R_24490001	RC1_1-HE
2487	chr3R	24730093	24730117	chr3R	24732472	24732496	Doc	6	2379	2.0	0.5	1.2	2.7	2403	chr3R	24730093	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732496	intron	tok +	chr3R_6_24730001	chr3R_24730001	RC1_1-HE
2491	chr3R	24927120	24927155	chr3R	24931912	24931947	Doc	15	4792	4.0	2.5	3.2	3.6	4827	chr3R	24927120	intergenic	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931947	intergenic	CG11771 +	chr3R_15_24925001	chr3R_24925001	RC1_1-HE
2510	chr3R	25725829	25725860	chr3R	25734990	25735021	roo	9	9160	5.0	5.0	5.0	1.5	9192	chr3R	25725829	intron	LpR2 -	chr3R	25730425	intron	LpR2 -	chr3R	25735021	intron	LpR2 -	chr3R_9_25730001	chr3R_25730001	RC1_1-HE
2513	chr3R	25832692	25832723	chr3R	25841875	25841906	roo	11	9183	4.0	6.5	5.2	1.8	9214	chr3R	25832692	exon	alpha4GT2 +	chr3R	25837299	intron	alpha4GT2 +	chr3R	25841906	exon	alpha4GT2 +	chr3R_11_25835001	chr3R_25835001	RC1_1-HE
2530	chr3R	26376321	26376355	chr3R	26385482	26385516	roo	16	9159	4.0	0.0	2.0	5.3	9195	chr3R	26376321	intergenic	not near genes	chr3R	26380918	intergenic	not near genes	chr3R	26385516	intergenic	not near genes	chr3R_16_26380001	chr3R_26380001	RC1_1-HE
2537	chr3R	26510500	26510533	chr3R	26519562	26519595	roo	12	9062	8.0	8.0	8.0	1.3	9095	chr3R	26510500	intron	plum -	chr3R	26515048	intron	plum -	chr3R	26519595	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	RC1_1-HE
2538	chr3R	26558325	26558352	chr3R	26565638	26565665	Stalker4	13	7312	4.5	4.5	4.5	2.4	7340	chr3R	26558325	intron	scrib +	chr3R	26561995	intron	scrib +	chr3R	26565665	intron	scrib +	chr3R_13_26560001	chr3R_26560001	RC1_1-HE
2539	chr3R	26642730	26642753	chr3R	26643124	26643147	jockey	6	394	2.5	2.5	2.5	1.7	417	chr3R	26642730	intergenic	not near genes	chr3R	26642938	intergenic	not near genes	chr3R	26643147	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	RC1_1-HE
2547	chr3R	26810550	26810584	chr3R	26811036	26811054	roo	13	485	3.5	8.0	5.8	1.9	504	chr3R	26810550	intron	Tl +	chr3R	26810802	intron	Tl +	chr3R	26811054	intron	Tl +	chr3R_13_26810001	chr3R_26810001	RC1_1-HE
2554	chr3R	27007404	27007433	chr3R	27016540	27016569	roo	9	9136	10.0	5.0	7.5	1.1	9165	chr3R	27007404	intron	RYa-R +	chr3R	27011986	intron	RYa-R +	chr3R	27016569	intron	RYa-R +	chr3R_9_27010001	chr3R_27010001	RC1_1-HE
2559	chr3R	27140524	27140541	chr3R	27148135	27148152	412	5	7611	1.0	3.0	2.0	1.7	7628	chr3R	27140524	intron	CG6051 -	chr3R	27144338	intron	CG6051 -	chr3R	27148152	intron	CG6051 -	chr3R_5_27140001	chr3R_27140001	RC1_1-HE
2570	chr3R	27342790	27342826	chr3R	27351372	27351408	Tirant	20	8582	4.0	3.5	3.8	4.2	8618	chr3R	27342790	intron	CG42534 +	chr3R	27347099	intron	CG42534 +	chr3R	27351408	intron	CG42534 +	chr3R_20_27345001	chr3R_27345001	RC1_1-HE
2581	chr3R	27725562	27725583	chr3R	27731005	27731026	I-element	6	5443	3.0	4.0	3.5	1.3	5464	chr3R	27725562	intergenic	not near genes	chr3R	27728294	intergenic	not near genes	chr3R	27731026	intergenic	not near genes	chr3R_6_27725001	chr3R_27725001	RC1_1-HE
2587	chr3R	27856757	27856767	chr3R	27858241	27858251	hopper2	5	1484	16.0	6.0	11.0	0.4	1494	chr3R	27856757	intron	CG34353 -	chr3R	27857504	intron	CG34353 -	chr3R	27858251	intron	CG34353 -	chr3R_5_27855001	chr3R_27855001	RC1_1-HE
2588	chr3R	27856772	27856791	chr3R	27858256	27858274	hopper2	9	1484	7.5	12.0	9.8	0.8	1502	chr3R	27856772	intron	CG34353 -	chr3R	27857523	intron	CG34353 -	chr3R	27858274	intron	CG34353 -	chr3R_9_27855001	chr3R_27855001	RC1_1-HE
2589	chr3R	27875700	27875732	chr3R	27882756	27882788	297	13	7056	6.0	7.5	6.8	1.7	7088	chr3R	27875700	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882788	intron	CG34353 -	chr3R_13_27875001	chr3R_27875001	RC1_1-HE
2596	chr3R	28068489	28068527	chr3R	28073932	28073970	I-element	10	5442	2.5	4.5	3.5	2.2	5481	chr3R	28068489	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073970	intron	CG34362 +	chr3R_10_28070001	chr3R_28070001	RC1_1-HE
2597	chr3R	28173666	28173703	chr3R	28181102	28181134	mdg1	6	7433	2.5	3.0	2.8	1.6	7468	chr3R	28173666	intron	CG34354 +	chr3R	28177400	intron	CG34354 +	chr3R	28181134	intron	CG34354 +	chr3R_6_28175001	chr3R_28175001	RC1_1-HE
2600	chr3R	28253337	28253371	chr3R	28255848	28255882	jockey	16	2511	4.0	7.0	5.5	2.5	2545	chr3R	28253337	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255882	intergenic	not near genes	chr3R_16_28250001	chr3R_28250001	RC1_1-HE
2609	chr3R	28758283	28758301	chr3R	28763901	28763919	roo	10	5618	8.0	0.0	4.0	2.0	5636	chr3R	28758283	intergenic	aqrs -	chr3R	28761101	intergenic	not near genes	chr3R	28763919	intergenic	not near genes	chr3R_10_28760001	chr3R_28760001	RC1_1-HE
2610	chr3R	28792873	28792894	chr3R	28797969	28797982	jockey	4	5094	2.0	5.5	3.8	0.8	5109	chr3R	28792873	intergenic	not near genes	chr3R	28795428	intergenic	not near genes	chr3R	28797982	intergenic	not near genes	chr3R_4_28795001	chr3R_28795001	RC1_1-HE
2617	chr3R	29079399	29079405	chr3R	29080772	29080778	NOF	6	1373	0.5	4.0	2.2	1.9	1379	chr3R	29079399	intron	CG11873 +	chr3R	29080088	intron	CG11873 +	chr3R	29080778	intron	CG11873 +	chr3R_6_29080001	chr3R_29080001	RC1_1-HE
2623	chr3R	29319828	29319852	chr3R	29320148	29320172	jockey	9	320	5.0	8.0	6.5	1.2	344	chr3R	29319828	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320172	intergenic	not near genes	chr3R_9_29320001	chr3R_29320001	RC1_1-HE
2628	chr3R	29406617	29406651	chr3R	29407904	29407908	jockey	11	1283	2.5	3.5	3.0	2.8	1291	chr3R	29406617	intron	Ptp99A +	chr3R	29407262	intron	Ptp99A +	chr3R	29407908	intron	Ptp99A +	chr3R_11_29405001	chr3R_29405001	RC1_1-HE
2638	chr3R	29738270	29738298	chr3R	29739738	29739766	hobo	9	1468	2.0	3.5	2.8	2.4	1496	chr3R	29738270	intergenic	CG1969 +,CG7598 +	chr3R	29739018	intron	CG1969 +	chr3R	29739766	5` UTR	CG1969 +	chr3R_9_29735001	chr3R_29735001	RC1_1-HE
2640	chr3R	29760359	29760390	chr3R	29761561	29761592	pogo	12	1202	3.5	3.0	3.2	2.9	1233	chr3R	29760359	intergenic	not near genes	chr3R	29760976	intergenic	not near genes	chr3R	29761592	intergenic	not near genes	chr3R_12_29760001	chr3R_29760001	RC1_1-HE
2643	chr3R	29882023	29882052	chr3R	29891181	29891210	roo	7	9158	2.5	2.0	2.2	2.2	9187	chr3R	29882023	intron	CG31038 +	chr3R	29886616	intron	CG31038 +	chr3R	29891210	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RC1_1-HE
2647	chr3R	30084855	30084881	chr3R	30086323	30086349	hobo	7	1468	5.5	6.0	5.8	1.0	1494	chr3R	30084855	intron	sima +	chr3R	30085602	intron	sima +	chr3R	30086349	intron	sima +	chr3R_7_30085001	chr3R_30085001	RC1_1-HE
2651	chr3R	30238758	30238796	chr3R	30239923	30239961	1360	8	1165	0.0	0.0	0.0	8.0	1203	chr3R	30238758	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30239961	intergenic	not near genes	chr3R_8_30235001	chr3R_30235001	RC1_1-HE
2655	chr3R	30317325	30317349	chr3R	30324918	30324942	roo	4	7593	3.0	0.5	1.8	1.4	7617	chr3R	30317325	intron	hdc +	chr3R	30321134	intron	hdc +	chr3R	30324942	intron	hdc +	chr3R_4_30320001	chr3R_30320001	RC1_1-HE
2659	chr3R	30396216	30396245	chr3R	30404483	30404512	roo	9	8266	4.0	3.0	3.5	2.0	8296	chr3R	30396216	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404512	5` UTR	CR45570 +	chr3R_9_30400001	chr3R_30400001	RC1_1-HE
2664	chr3R	30480475	30480509	chr3R	30482944	30482978	jockey	8	2469	5.0	2.0	3.5	1.8	2503	chr3R	30480475	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482978	intron	PH4alphaEFB +	chr3R_8_30480001	chr3R_30480001	RC1_1-HE
2671	chr3R	30679516	30679550	chr3R	30686986	30687020	blood	6	7470	4.5	4.0	4.2	1.2	7504	chr3R	30679516	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687020	intergenic	not near genes	chr3R_6_30680001	chr3R_30680001	RC1_1-HE
2674	chr3R	30818809	30818845	chr3R	30820374	30820411	1360	14	1566	3.5	2.5	3.0	3.5	1602	chr3R	30818809	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820411	intron	cindr +	chr3R_14_30815001	chr3R_30815001	RC1_1-HE
2680	chr3R	31074228	31074246	chr3R	31081827	31081845	springer	4	7599	4.5	5.0	4.8	0.7	7617	chr3R	31074228	intron	Sox100B +	chr3R	31078036	intron	Sox100B +	chr3R	31081845	intron	Sox100B +	chr3R_4_31075001	chr3R_31075001	RC1_1-HE
2686	chr3R	31279375	31279409	chr3R	31285567	31285601	diver	12	6192	4.5	5.0	4.8	2.1	6226	chr3R	31279375	intergenic	not near genes	chr3R	31282488	intergenic	not near genes	chr3R	31285601	intergenic	not near genes	chr3R_12_31280001	chr3R_31280001	RC1_1-HE
2687	chr3R	31413090	31413121	chr3R	31418291	31418322	copia	9	5201	4.0	3.0	3.5	2.0	5232	chr3R	31413090	intron	Gprk2 +	chr3R	31415706	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_9_31415001	chr3R_31415001	RC1_1-HE
2698	chr3R	31691530	31691562	chr3R	31696297	31696329	Doc	7	4767	3.0	2.5	2.8	1.8	4799	chr3R	31691530	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696329	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RC1_1-HE
2713	chr3R	31997991	31998024	chr3R	32005462	32005495	blood	12	7471	5.5	5.5	5.5	1.8	7504	chr3R	31997991	intron	heph -	chr3R	32001743	intron	heph -	chr3R	32005495	intron	heph -	chr3R_12_32000001	chr3R_32000001	RC1_1-HE
2718	chr4	76495	76509	chr4	81932	81953	I-element	9	5441	2.5	3.0	2.8	2.4	5458	chr4	76495	intron	pan +	chr4	79224	intron	pan +	chr4	81953	intron	pan +	chr4_9_75001	chr4_75001	RC1_1-HE
2722	chr4	671604	671636	chr4	680188	680219	Tirant	14	8583	5.0	7.0	6.0	2.0	8615	chr4	671604	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680219	intron	CG11360 +	chr4_14_675001	chr4_675001	RC1_1-HE
2726	chrX	295855	295876	chrX	303476	303497	412	8	7621	5.0	3.5	4.2	1.5	7642	chrX	295855	intron	CG3777 +	chrX	299676	intron	CG3777 +	chrX	303497	intron	CG3777 +	chrX_8_295001	chrX_295001	RC1_1-HE
2727	chrX	318468	318501	chrX	323555	323588	flea	14	5086	4.5	6.0	5.2	2.3	5120	chrX	318468	intron,intron	CG3777 +,CG32816 -	chrX	321028	intron,intron	CG3777 +,CG32816 -	chrX	323588	intron,intron	CG3777 +,CG32816 -	chrX_14_320001	chrX_320001	RC1_1-HE
2732	chrX	428418	428452	chrX	434604	434638	3S18	7	6186	3.0	2.0	2.5	2.0	6220	chrX	428418	intron	CG32816 -	chrX	431528	intron	CG32816 -	chrX	434638	intron	CG32816 -	chrX_7_430001	chrX_430001	RC1_1-HE
2736	chrX	551421	551453	chrX	558982	559014	412	31	7560	8.5	5.5	7.0	3.9	7593	chrX	551421	intron	Appl +	chrX	555218	intron	Appl +	chrX	559014	intron	Appl +	chrX_31_555001	chrX_555001	RC1_1-HE
2745	chrX	827599	827635	chrX	835392	835428	roo	21	7793	5.5	3.5	4.5	3.8	7829	chrX	827599	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835428	intron	CG43867 -	chrX_21_830001	chrX_830001	RC1_1-HE
2748	chrX	906704	906733	chrX	908494	908523	S-element	10	1790	2.0	5.5	3.8	2.1	1819	chrX	906704	intron	CG43867 -	chrX	907614	intron	CG43867 -	chrX	908523	intron	CG43867 -	chrX_10_905001	chrX_905001	RC1_1-HE
2752	chrX	1357772	1357806	chrX	1367943	1367977	Doc	12	10171	5.5	2.0	3.8	2.5	10205	chrX	1357772	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367977	intergenic	not near genes	chrX_12_1360001	chrX_1360001	RC1_1-HE
2754	chrX	1627971	1628000	chrX	1635440	1635463	gtwin	14	7469	7.5	8.5	8.0	1.6	7492	chrX	1627971	intron,intron	Mur2B -,br +	chrX	1631717	intron,intron	Mur2B -,br +	chrX	1635463	intron,intron	Mur2B -,br +	chrX_14_1630001	chrX_1630001	RC1_1-HE
2759	chrX	1930539	1930566	chrX	1938111	1938138	opus	6	7572	1.5	2.5	2.0	2.0	7599	chrX	1930539	intergenic	CG11596 +	chrX	1934338	intergenic	not near genes	chrX	1938138	3` UTR	CG3857 -	chrX_6_1930001	chrX_1930001	RC1_1-HE
2760	chrX	1954887	1954918	chrX	1962828	1962852	Stalker2	9	7940	3.0	3.5	3.2	2.1	7965	chrX	1954887	intron	Hr4 +	chrX	1958870	intron	Hr4 +	chrX	1962852	intron	Hr4 +	chrX_9_1955001	chrX_1955001	RC1_1-HE
2766	chrX	2399844	2399858	chrX	2408193	2408212	roo	9	8353	6.5	0.5	3.5	2.0	8368	chrX	2399844	intergenic	not near genes	chrX	2404028	intergenic	not near genes	chrX	2408212	intergenic	not near genes	chrX_9_2400001	chrX_2400001	RC1_1-HE
2771	chrX	2664391	2664400	chrX	2665538	2665547	1360	9	1147	0.5	6.5	3.5	2.0	1156	chrX	2664391	intron	sgg +	chrX	2664969	intron	sgg +	chrX	2665547	intron	sgg +	chrX_9_2660001	chrX_2660001	RC1_1-HE
2772	chrX	2664401	2664409	chrX	2665536	2665556	1360	5	1143	0.0	6.0	3.0	1.2	1155	chrX	2664401	intron	sgg +	chrX	2664978	intron	sgg +	chrX	2665556	intron	sgg +	chrX_5_2660001	chrX_2660001	RC1_1-HE
2774	chrX	2844908	2844928	chrX	2852319	2852339	mdg1	7	7411	5.5	2.5	4.0	1.4	7431	chrX	2844908	intron	kirre +	chrX	2848624	intron	kirre +	chrX	2852339	intron	kirre +	chrX_7_2845001	chrX_2845001	RC1_1-HE
2778	chrX	3058018	3058047	chrX	3058260	3058289	pogo	7	242	2.0	0.5	1.2	3.2	271	chrX	3058018	intron	kirre +	chrX	3058154	intron	kirre +	chrX	3058289	intron	kirre +	chrX_7_3055001	chrX_3055001	RC1_1-HE
2779	chrX	3075635	3075643	chrX	3080943	3080951	Transpac	7	5308	8.5	1.5	5.0	1.2	5316	chrX	3075635	intron	kirre +	chrX	3078293	intron	kirre +	chrX	3080951	intron	kirre +	chrX_7_3075001	chrX_3075001	RC1_1-HE
2791	chrX	3415041	3415051	chrX	3421227	3421237	3S18	4	6186	2.0	4.0	3.0	1.0	6196	chrX	3415041	intron,intron	CR44999 +,CG12535 -	chrX	3418139	intron,intron	CR44999 +,CG12535 -	chrX	3421237	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RC1_1-HE
2793	chrX	3493088	3493121	chrX	3502248	3502281	roo	8	9160	3.0	1.5	2.2	2.5	9193	chrX	3493088	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502281	intron,intron	CR44999 +,Gas8 -	chrX_8_3495001	chrX_3495001	RC1_1-HE
2801	chrX	3597548	3597584	chrX	3619717	3619735	roo	18	22168	5.5	6.0	5.8	2.6	22187	chrX	3597548	intron	AstA-R1 +	chrX	3608642	intron	AstA-R1 +	chrX	3619735	intron	AstA-R1 +	chrX_18_3605001	chrX_3605001	RC1_1-HE
2803	chrX	3726759	3726771	chrX	3730157	3730169	NOF	7	3398	6.5	0.0	3.2	1.7	3410	chrX	3726759	intron	tlk +	chrX	3728464	intron	tlk +	chrX	3730169	intron	tlk +	chrX_7_3725001	chrX_3725001	RC1_1-HE
2804	chrX	3726773	3726797	chrX	3730155	3730195	NOF	8	3394	3.5	0.0	1.8	2.9	3422	chrX	3726773	intron	tlk +	chrX	3728484	intron	tlk +	chrX	3730195	intron	tlk +	chrX_8_3725001	chrX_3725001	RC1_1-HE
2809	chrX	3842324	3842351	chrX	3842566	3842593	pogo	11	242	4.5	2.5	3.5	2.4	269	chrX	3842324	intron	ec +	chrX	3842458	intron	ec +	chrX	3842593	intron	ec +	chrX_11_3840001	chrX_3840001	RC1_1-HE
2812	chrX	3986875	3986895	chrX	3994509	3994519	412	6	7632	3.0	7.0	5.0	1.0	7644	chrX	3986875	intergenic	not near genes	chrX	3990697	intergenic	not near genes	chrX	3994519	intergenic	not near genes	chrX_6_3990001	chrX_3990001	RC1_1-HE
2815	chrX	4157891	4157923	chrX	4164927	4164959	297	20	7036	11.0	7.5	9.2	2.0	7068	chrX	4157891	intron	Fas2 -	chrX	4161425	intron	Fas2 -	chrX	4164959	intron	Fas2 -	chrX_20_4160001	chrX_4160001	RC1_1-HE
2828	chrX	4700392	4700403	chrX	4700736	4700747	jockey	4	344	6.0	2.5	4.2	0.8	355	chrX	4700392	3` UTR	ctp +	chrX	4700570	3` UTR	ctp +	chrX	4700747	3` UTR	ctp +	chrX_4_4700001	chrX_4700001	RC1_1-HE
2829	chrX	4731819	4731834	chrX	4736913	4736916	jockey	5	5091	5.5	6.0	5.8	0.7	5097	chrX	4731819	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736916	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RC1_1-HE
2832	chrX	4763249	4763283	chrX	4763738	4763772	Stalker4	8	489	4.0	2.0	3.0	2.0	523	chrX	4763249	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763772	intergenic	not near genes	chrX_8_4760001	chrX_4760001	RC1_1-HE
2833	chrX	4792381	4792411	chrX	4792816	4792845	jockey	16	434	2.0	11.0	6.5	2.1	464	chrX	4792381	intergenic	not near genes	chrX	4792613	intergenic	not near genes	chrX	4792845	intergenic	not near genes	chrX_16_4790001	chrX_4790001	RC1_1-HE
2834	chrX	4827968	4828002	chrX	4835340	4835374	Stalker4	16	7369	4.0	5.0	4.5	2.9	7406	chrX	4827968	intergenic	not near genes	chrX	4831671	intergenic	not near genes	chrX	4835374	intergenic	not near genes	chrX_16_4830001	chrX_4830001	RC1_1-HE
2837	chrX	4990040	4990075	chrX	4997255	4997290	roo	10	7215	0.5	2.0	1.2	4.5	7250	chrX	4990040	intron	CR44833 -	chrX	4993665	intron	CR44833 -	chrX	4997290	intron	CR44833 -	chrX_10_4990001	chrX_4990001	RC1_1-HE
2839	chrX	5096293	5096302	chrX	5103859	5103868	springer	6	7566	0.0	3.5	1.8	2.1	7575	chrX	5096293	intron,intron	CG15465 +,rg +	chrX	5100080	intron,intron	CG15465 +,rg +	chrX	5103868	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RC1_1-HE
2842	chrX	5338707	5338740	chrX	5339961	5339969	jockey	7	1250	2.0	5.0	3.5	1.6	1262	chrX	5338707	intergenic	not near genes	chrX	5339338	intergenic	not near genes	chrX	5339969	intergenic	SK +	chrX_7_5335001	chrX_5335001	RC1_1-HE
2854	chrX	5883809	5883841	chrX	5884051	5884083	pogo	6	242	1.5	3.0	2.2	1.9	274	chrX	5883809	intron	CR45668 -	chrX	5883946	intron	CR45668 -	chrX	5884083	intron	CR45668 -	chrX_6_5880001	chrX_5880001	RC1_1-HE
2855	chrX	5884162	5884191	chrX	5884404	5884418	pogo	8	239	5.0	4.0	4.5	1.5	256	chrX	5884162	intron	CR45668 -	chrX	5884290	intron	CR45668 -	chrX	5884418	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RC1_1-HE
2858	chrX	6171580	6171617	chrX	6179014	6179051	Quasimodo	12	7432	6.0	5.0	5.5	1.8	7471	chrX	6171580	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179051	intron	Ca-alpha1T -	chrX_12_6175001	chrX_6175001	RC1_1-HE
2861	chrX	6335215	6335240	chrX	6337726	6337751	Tirant	13	2511	0.5	4.5	2.5	3.7	2536	chrX	6335215	intergenic	not near genes	chrX	6336483	intergenic	not near genes	chrX	6337751	intergenic	CG3842 +	chrX_13_6335001	chrX_6335001	RC1_1-HE
2862	chrX	6392869	6392899	chrX	6397635	6397665	Doc	7	4766	2.0	0.5	1.2	3.2	4796	chrX	6392869	intergenic	not near genes	chrX	6395267	intergenic	not near genes	chrX	6397665	intergenic	not near genes	chrX_7_6395001	chrX_6395001	RC1_1-HE
2866	chrX	6562823	6562845	chrX	6571299	6571328	Tirant	8	8482	4.0	6.0	5.0	1.3	8505	chrX	6562823	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571328	intron	CG34417 +	chrX_8_6565001	chrX_6565001	RC1_1-HE
2868	chrX	6605481	6605497	chrX	6608504	6608520	Burdock	5	3023	3.5	1.0	2.2	1.6	3039	chrX	6605481	intron	pigs +	chrX	6607000	intron	pigs +	chrX	6608520	intron	pigs +	chrX_5_6605001	chrX_6605001	RC1_1-HE
2878	chrX	7023598	7023632	chrX	7030989	7031023	Tabor	15	7391	2.5	2.0	2.2	4.7	7425	chrX	7023598	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031023	intron	CG12541 -	chrX_15_7025001	chrX_7025001	RC1_1-HE
2880	chrX	7125243	7125278	chrX	7134403	7134438	roo	14	9160	5.5	7.0	6.2	1.9	9195	chrX	7125243	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134438	intergenic	not near genes	chrX_14_7125001	chrX_7125001	RC1_1-HE
2885	chrX	7702905	7702936	chrX	7703345	7703376	jockey	30	440	7.0	10.5	8.8	3.1	471	chrX	7702905	intron	CHES-1-like -	chrX	7703140	intron	CHES-1-like -	chrX	7703376	intron	CHES-1-like -	chrX_30_7700001	chrX_7700001	RC1_1-HE
2887	chrX	7845724	7845756	chrX	7847216	7847248	hopper2	19	1492	4.0	0.5	2.2	5.9	1524	chrX	7845724	intergenic	not near genes	chrX	7846486	intergenic	not near genes	chrX	7847248	intergenic	not near genes	chrX_19_7845001	chrX_7845001	RC1_1-HE
2889	chrX	8031429	8031459	chrX	8035739	8035769	Juan	8	4310	6.0	4.5	5.2	1.3	4340	chrX	8031429	intergenic	not near genes	chrX	8033599	intergenic	not near genes	chrX	8035769	3` UTR	CG2233 -	chrX_8_8030001	chrX_8030001	RC1_1-HE
2893	chrX	8364843	8364881	chrX	8365241	8365262	BS	22	397	4.5	4.0	4.2	4.2	419	chrX	8364843	intron	nAChRalpha3 -	chrX	8365052	intron	nAChRalpha3 -	chrX	8365262	intron	nAChRalpha3 -	chrX_22_8365001	chrX_8365001	RC1_1-HE
2908	chrX	8922324	8922360	chrX	8922759	8922795	jockey	9	433	4.5	2.0	3.2	2.1	471	chrX	8922324	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922795	intron	rdgA +	chrX_9_8920001	chrX_8920001	RC1_1-HE
2909	chrX	8927587	8927614	chrX	8929850	8929885	NOF	6	2270	5.5	3.0	4.2	1.2	2298	chrX	8927587	intron	rdgA +	chrX	8928736	intron	rdgA +	chrX	8929885	intron	rdgA +	chrX_6_8925001	chrX_8925001	RC1_1-HE
2910	chrX	8948756	8948788	chrX	8956267	8956299	roo	7	7511	5.5	1.0	3.2	1.7	7543	chrX	8948756	intron	rdgA +	chrX	8952528	intron	rdgA +	chrX	8956299	intron	rdgA +	chrX_7_8950001	chrX_8950001	RC1_1-HE
2924	chrX	9508148	9508167	chrX	9509667	9509686	jockey	8	1519	5.5	7.0	6.2	1.1	1538	chrX	9508148	intron	CG32700 -	chrX	9508917	intron	CG32700 -	chrX	9509686	intron	CG32700 -	chrX_8_9505001	chrX_9505001	RC1_1-HE
2925	chrX	9575798	9575815	chrX	9576123	9576140	mdg3	10	324	5.0	6.5	5.8	1.5	342	chrX	9575798	intron,exon	CG32699 -,CG42395 -	chrX	9575969	intron,intron	CG32699 -,CG42395 -	chrX	9576140	intron,5` UTR	CG32699 -,CG42395 -	chrX_10_9575001	chrX_9575001	RC1_1-HE
2936	chrX	10138215	10138247	chrX	10145720	10145752	412	7	7505	4.0	4.5	4.2	1.3	7537	chrX	10138215	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145752	intron,intron	RhoU +,CR44894 -	chrX_7_10140001	chrX_10140001	RC1_1-HE
2940	chrX	10267299	10267334	chrX	10276450	10276485	roo	7	9151	3.5	3.0	3.2	1.7	9186	chrX	10267299	3` UTR	alpha-Man-I -	chrX	10271892	intron	alpha-Man-I -	chrX	10276485	3` UTR	alpha-Man-I -	chrX_7_10270001	chrX_10270001	RC1_1-HE
2944	chrX	10550866	10550886	chrX	10552334	10552354	hobo	5	1468	2.5	3.0	2.8	1.3	1488	chrX	10550866	intron	spri -	chrX	10551610	intron	spri -	chrX	10552354	intron	spri -	chrX_5_10550001	chrX_10550001	RC1_1-HE
2946	chrX	10686047	10686068	chrX	10691185	10691206	roo	8	5138	6.0	3.0	4.5	1.5	5159	chrX	10686047	intron	X11Lbeta +	chrX	10688626	intron	X11Lbeta +	chrX	10691206	intron	X11Lbeta +	chrX_8_10685001	chrX_10685001	RC1_1-HE
2950	chrX	10772678	10772693	chrX	10772759	10772777	Tirant	6	81	3.0	2.0	2.5	1.7	99	chrX	10772678	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772777	intron	CG15211 +	chrX_6_10770001	chrX_10770001	RC1_1-HE
2955	chrX	11096011	11096030	chrX	11103114	11103133	HMS-Beagle	4	7103	1.0	3.5	2.2	1.2	7122	chrX	11096011	intergenic	not near genes	chrX	11099572	intergenic	not near genes	chrX	11103133	intron	CG42249 +	chrX_4_11095001	chrX_11095001	RC1_1-HE
2956	chrX	11194451	11194461	chrX	11201873	11201883	gypsy5	4	7422	6.0	9.5	7.8	0.5	7432	chrX	11194451	intergenic	not near genes	chrX	11198167	intergenic	not near genes	chrX	11201883	intergenic	CG11106 +	chrX_4_11195001	chrX_11195001	RC1_1-HE
2958	chrX	11268559	11268594	chrX	11270053	11270088	hopper2	19	1493	4.5	4.5	4.5	3.5	1529	chrX	11268559	intron	CG44422 -	chrX	11269324	intron	CG44422 -	chrX	11270088	intron	CG44422 -	chrX_19_11265001	chrX_11265001	RC1_1-HE
2960	chrX	11312061	11312088	chrX	11319414	11319442	Stalker2	5	7354	1.0	3.0	2.0	1.7	7381	chrX	11312061	intergenic	not near genes	chrX	11315752	intergenic	not near genes	chrX	11319442	intergenic	not near genes	chrX_5_11315001	chrX_11315001	RC1_1-HE
2964	chrX	11535042	11535044	chrX	11541513	11541515	Burdock	4	6471	7.5	0.0	3.8	0.8	6473	chrX	11535042	intron	Drak +	chrX	11538278	intron	Drak +	chrX	11541515	intron	Drak +	chrX_4_11535001	chrX_11535001	RC1_1-HE
2966	chrX	11633414	11633450	chrX	11640469	11640505	297	14	7055	6.0	3.5	4.8	2.4	7091	chrX	11633414	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640505	intron	Ptp10D +	chrX_14_11635001	chrX_11635001	RC1_1-HE
2967	chrX	11645106	11645146	chrX	11648276	11648317	NOF	6	3171	3.0	3.5	3.2	1.4	3211	chrX	11645106	intron	Ptp10D +	chrX	11646712	intron	Ptp10D +	chrX	11648317	intron	Ptp10D +	chrX_6_11645001	chrX_11645001	RC1_1-HE
2973	chrX	12168136	12168166	chrX	12173579	12173609	I-element	7	5443	6.0	2.0	4.0	1.4	5473	chrX	12168136	intron	Ten-a +	chrX	12170872	intron	Ten-a +	chrX	12173609	intron	Ten-a +	chrX_7_12170001	chrX_12170001	RC1_1-HE
3000	chrX	12930595	12930605	chrX	12937712	12937722	HMS-Beagle	5	7117	4.0	4.0	4.0	1.0	7127	chrX	12930595	intron	fne +	chrX	12934158	intron	fne +	chrX	12937722	intron	fne +	chrX_5_12930001	chrX_12930001	RC1_1-HE
3016	chrX	13401481	13401522	chrX	13401834	13401874	jockey	4	352	1.5	1.5	1.5	1.6	393	chrX	13401481	intergenic	CG1673 +,CG12725 -	chrX	13401678	intergenic	CG12725 -,CG1673 +	chrX	13401874	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	RC1_1-HE
3017	chrX	13403020	13403042	chrX	13403148	13403170	X-element	8	128	6.0	1.0	3.5	1.8	150	chrX	13403020	intergenic	CG12725 -	chrX	13403095	intergenic	CG12725 -	chrX	13403170	intergenic	CG12725 -	chrX_8_13400001	chrX_13400001	RC1_1-HE
3019	chrX	13429459	13429489	chrX	13430609	13430639	jockey	15	1150	3.5	2.0	2.8	3.9	1180	chrX	13429459	intergenic	not near genes	chrX	13430049	intergenic	not near genes	chrX	13430639	intergenic	not near genes	chrX_15_13430001	chrX_13430001	RC1_1-HE
3029	chrX	13937979	13938011	chrX	13941251	13941283	I-element	5	3272	1.0	0.5	0.8	2.8	3304	chrX	13937979	intron	mamo -	chrX	13939631	intron	mamo -	chrX	13941283	intron	mamo -	chrX_5_13935001	chrX_13935001	RC1_1-HE
3033	chrX	14105020	14105056	chrX	14114171	14114208	roo	16	9152	2.0	2.5	2.2	5.0	9188	chrX	14105020	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114208	5` UTR	CR44657 +	chrX_16_14105001	chrX_14105001	RC1_1-HE
3034	chrX	14157590	14157619	chrX	14163248	14163277	297	10	5658	2.5	3.5	3.0	2.5	5687	chrX	14157590	intergenic	not near genes	chrX	14160434	intergenic	not near genes	chrX	14163277	intergenic	not near genes	chrX_10_14160001	chrX_14160001	RC1_1-HE
3043	chrX	14416309	14416341	chrX	14421078	14421109	F-element	14	4768	4.5	4.5	4.5	2.5	4800	chrX	14416309	intron	dpr8 +	chrX	14418709	intron	dpr8 +	chrX	14421109	intron	dpr8 +	chrX_14_14415001	chrX_14415001	RC1_1-HE
3044	chrX	14589685	14589703	chrX	14589927	14589945	pogo	9	242	0.0	0.0	0.0	9.0	260	chrX	14589685	intron	CG9413 -	chrX	14589815	intron	CG9413 -	chrX	14589945	intron	CG9413 -	chrX_9_14585001	chrX_14585001	RC1_1-HE
3046	chrX	14636461	14636493	chrX	14641903	14641935	I-element	15	5442	5.0	3.0	4.0	3.0	5474	chrX	14636461	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641935	intron	NetA -	chrX_15_14635001	chrX_14635001	RC1_1-HE
3050	chrX	14778024	14778061	chrX	14782822	14782859	Doc	9	4798	2.0	3.5	2.8	2.4	4835	chrX	14778024	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782859	intergenic	Ag5r2 -	chrX_9_14780001	chrX_14780001	RC1_1-HE
3055	chrX	14818761	14818791	chrX	14823966	14823996	copia	5	5202	4.0	3.0	3.5	1.1	5235	chrX	14818761	intron	rut -	chrX	14821378	intron	rut -	chrX	14823996	intron	rut -	chrX_5_14820001	chrX_14820001	RC1_1-HE
3067	chrX	15273700	15273739	chrX	15274868	15274907	1360	19	1167	6.5	5.5	6.0	2.7	1207	chrX	15273700	intergenic	not near genes	chrX	15274304	intergenic	not near genes	chrX	15274907	intergenic	not near genes	chrX_19_15270001	chrX_15270001	RC1_1-HE
3072	chrX	15413048	15413084	chrX	15417351	15417387	Juan	22	4303	6.0	4.0	5.0	3.7	4339	chrX	15413048	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417387	intron	Cngl -	chrX_22_15415001	chrX_15415001	RC1_1-HE
3073	chrX	15421919	15421952	chrX	15423431	15423464	pogo	13	1512	3.0	5.0	4.0	2.6	1545	chrX	15421919	intron	Cngl -	chrX	15422692	intron	Cngl -	chrX	15423464	intron	Cngl -	chrX_13_15420001	chrX_15420001	RC1_1-HE
3074	chrX	15435691	15435704	chrX	15436118	15436138	rover	8	433	1.0	11.5	6.2	1.1	447	chrX	15435691	intron	Cngl -	chrX	15435914	intron	Cngl -	chrX	15436138	intron	Cngl -	chrX_8_15435001	chrX_15435001	RC1_1-HE
3088	chrX	16222779	16222797	chrX	16231130	16231148	roo	6	8351	4.0	2.0	3.0	1.5	8369	chrX	16222779	intergenic	not near genes	chrX	16226964	intergenic	not near genes	chrX	16231148	intergenic	not near genes	chrX_6_16225001	chrX_16225001	RC1_1-HE
3091	chrX	16492644	16492677	chrX	16498222	16498255	mdg3	13	5578	8.0	7.5	7.8	1.5	5611	chrX	16492644	intron	para -	chrX	16495450	intron	para -	chrX	16498255	intron	para -	chrX_13_16495001	chrX_16495001	RC1_1-HE
3111	chrX	17195202	17195237	chrX	17200289	17200325	flea	10	5085	3.0	3.0	3.0	2.5	5123	chrX	17195202	3` UTR	baz +	chrX	17197764	3` UTR	baz +	chrX	17200325	3` UTR	baz +	chrX_10_17195001	chrX_17195001	RC1_1-HE
3121	chrX	17556942	17556957	chrX	17557442	17557457	mdg1	6	500	5.0	4.0	4.5	1.1	515	chrX	17556942	intron	CG43658 -	chrX	17557200	intron	CG43658 -	chrX	17557457	intron	CG43658 -	chrX_6_17555001	chrX_17555001	RC1_1-HE
3126	chrX	17792951	17792983	chrX	17796250	17796277	flea	6	3296	5.5	5.0	5.2	1.0	3326	chrX	17792951	intron	OdsH +	chrX	17794614	intron	OdsH +	chrX	17796277	intron	OdsH +	chrX_6_17790001	chrX_17790001	RC1_1-HE
3137	chrX	18194064	18194101	chrX	18194600	18194637	BS	28	535	7.0	6.0	6.5	3.7	573	chrX	18194064	intron	Frq2 +	chrX	18194350	intron	Frq2 +	chrX	18194637	intron	Frq2 +	chrX_28_18190001	chrX_18190001	RC1_1-HE
3144	chrX	18429492	18429526	chrX	18434804	18434838	Transpac	17	5312	4.5	4.0	4.2	3.3	5346	chrX	18429492	intergenic	not near genes	chrX	18432165	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_17_18430001	chrX_18430001	RC1_1-HE
3149	chrX	18555379	18555402	chrX	18556901	18556925	transib2	7	1523	0.5	3.5	2.0	2.3	1546	chrX	18555379	intron	Bx +	chrX	18556152	intron	Bx +	chrX	18556925	intron	Bx +	chrX_7_18555001	chrX_18555001	RC1_1-HE
3164	chrX	19060409	19060435	chrX	19065194	19065220	Doc	14	4785	8.5	8.0	8.2	1.5	4811	chrX	19060409	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065220	intron	CG14190 +	chrX_14_19060001	chrX_19060001	RC1_1-HE
3169	chrX	19136556	19136584	chrX	19143476	19143493	412	7	6918	4.0	4.0	4.0	1.4	6937	chrX	19136556	intergenic	not near genes	chrX	19140024	intergenic	not near genes	chrX	19143493	3` UTR	RhoGAP18B -	chrX_7_19140001	chrX_19140001	RC1_1-HE
3176	chrX	19356987	19357015	chrX	19358429	19358457	NOF	16	1442	3.5	0.5	2.0	5.3	1470	chrX	19356987	intron	kek5 +	chrX	19357722	intron	kek5 +	chrX	19358457	intron	kek5 +	chrX_16_19355001	chrX_19355001	RC1_1-HE
3177	chrX	19380154	19380175	chrX	19380396	19380418	pogo	6	243	6.5	3.0	4.8	1.0	264	chrX	19380154	intron	kek5 +	chrX	19380286	intron	kek5 +	chrX	19380418	intron	kek5 +	chrX_6_19380001	chrX_19380001	RC1_1-HE
3181	chrX	19472122	19472157	chrX	19472693	19472728	jockey	5	566	1.5	3.5	2.5	1.4	606	chrX	19472122	intergenic	kek5 +	chrX	19472425	intergenic	not near genes	chrX	19472728	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RC1_1-HE
3187	chrX	19710072	19710101	chrX	19711859	19711888	S-element	12	1787	2.5	5.0	3.8	2.5	1816	chrX	19710072	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711888	intron	meso18E -	chrX_12_19710001	chrX_19710001	RC1_1-HE
3192	chrX	19812740	19812761	chrX	19816029	19816050	Gypsy12A_LTR	9	3289	37.0	22.5	29.8	0.3	3310	chrX	19812740	5` UTR	skpD +	chrX	19814395	intergenic	not near genes	chrX	19816050	intergenic	skpC +	chrX_9_19810001	chrX_19810001	RC1_1-HE
3219	chrX	20377331	20377349	chrX	20378799	20378817	hobo	6	1468	1.0	3.5	2.2	1.9	1486	chrX	20377331	intergenic	not near genes	chrX	20378074	intergenic	not near genes	chrX	20378817	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RC1_1-HE
3223	chrX	20504136	20504154	chrX	20505658	20505676	transib2	6	1522	4.5	5.0	4.8	1.0	1540	chrX	20504136	intron	RhoGAP19D -	chrX	20504906	intron	RhoGAP19D -	chrX	20505676	intron	RhoGAP19D -	chrX_6_20500001	chrX_20500001	RC1_1-HE
3234	chrX	20836725	20836750	chrX	20844328	20844353	roo	16	7603	1.5	3.0	2.2	5.0	7628	chrX	20836725	intron	shakB -	chrX	20840539	intron	shakB -	chrX	20844353	intron	shakB -	chrX_16_20840001	chrX_20840001	RC1_1-HE
3237	chrX	20940716	20940752	chrX	20942186	20942222	hobo	14	1470	2.5	3.0	2.8	3.7	1506	chrX	20940716	intergenic	not near genes	chrX	20941469	intergenic	not near genes	chrX	20942222	intergenic	not near genes	chrX_14_20940001	chrX_20940001	RC1_1-HE
3239	chrX	20956991	20957009	chrX	20962434	20962452	I-element	7	5443	6.0	5.0	5.5	1.1	5461	chrX	20956991	intergenic	not near genes	chrX	20959722	intergenic	not near genes	chrX	20962452	intergenic	Ser6 -	chrX_7_20955001	chrX_20955001	RC1_1-HE
3245	chrX	21061869	21061878	chrX	21062355	21062364	roo	6	486	5.5	2.0	3.8	1.2	495	chrX	21061869	intron	bves +	chrX	21062116	intron	bves +	chrX	21062364	intron,3` UTR	bves +,CG32512 -	chrX_6_21060001	chrX_21060001	RC1_1-HE
3246	chrX	21086127	21086161	chrX	21087157	21087191	jockey	21	1030	4.5	6.5	5.5	3.2	1064	chrX	21086127	intergenic	not near genes	chrX	21086659	intergenic	not near genes	chrX	21087191	intergenic	not near genes	chrX_21_21085001	chrX_21085001	RC1_1-HE
3259	chrX	21458697	21458729	chrX	21464134	21464166	Ivk	10	5436	1.0	3.5	2.2	3.1	5469	chrX	21458697	intergenic	not near genes	chrX	21461432	intergenic	not near genes	chrX	21464166	intergenic	not near genes	chrX_10_21460001	chrX_21460001	RC1_1-HE
3272	chrX	22697493	22697519	chrX	22701791	22701817	Juan	17	4298	6.5	8.5	7.5	2.0	4324	chrX	22697493	intron	CR44997 +	chrX	22699655	intron	CR44997 +	chrX	22701817	intron	CR44997 +	chrX_17_22695001	chrX_22695001	RC1_1-HE
3273	chrX	22771505	22771539	chrX	22774797	22774831	297	9	3292	2.0	4.0	3.0	2.2	3326	chrX	22771505	intron	CR44997 +	chrX	22773168	intron	CR44997 +	chrX	22774831	intron	CR44997 +	chrX_9_22770001	chrX_22770001	RC1_1-HE
3275	chrX	22811994	22812002	chrX	22816768	22816776	F-element	6	4774	14.5	6.0	10.2	0.5	4782	chrX	22811994	intergenic	CG12446 -	chrX	22814385	intergenic	not near genes	chrX	22816776	intergenic	not near genes	chrX_6_22810001	chrX_22810001	RC1_1-HE
3280	chrX	22987109	22987136	chrX	22989769	22989779	Burdock	7	2658	2.0	2.0	2.0	2.3	2670	chrX	22987109	intron,intron	stnA -,stnB -	chrX	22988444	intron,intron	stnA -,stnB -	chrX	22989779	intron,intron	stnA -,stnB -	chrX_7_22985001	chrX_22985001	RC1_1-HE
3282	chrX	22996312	22996329	chrX	23003546	23003563	roo	9	7233	3.5	4.0	3.8	1.9	7251	chrX	22996312	intron,intron	stnA -,stnB -	chrX	22999938	intron,intron	stnA -,stnB -	chrX	23003563	intron,intron	stnA -,stnB -	chrX_9_22995001	chrX_22995001	RC1_1-HE