SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
3	chr2L	47457	47490	chr2L	52563	52596	jockey	18	5106	8.0	9.0	8.5	1.9	5139	chr2L	47457	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52596	intron	Cda5 -	chr2L_18_50001	chr2L_50001	KT6_1-HE
7	chr2L	347885	347913	chr2L	355386	355414	blood	10	7501	1.5	1.0	1.2	4.5	7529	chr2L	347885	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355414	3` UTR	Plc21C +	chr2L_10_350001	chr2L_350001	KT6_1-HE
11	chr2L	686924	686951	chr2L	695965	695992	roo	17	9040	7.5	3.0	5.2	2.7	9068	chr2L	686924	intron	ds -	chr2L	691458	intron	ds -	chr2L	695992	intron	ds -	chr2L_17_690001	chr2L_690001	KT6_1-HE
15	chr2L	770462	770493	chr2L	772244	772275	Bari1	11	1782	1.5	5.5	3.5	2.4	1813	chr2L	770462	intergenic	not near genes	chr2L	771368	intergenic	not near genes	chr2L	772275	intergenic	CR44614 +	chr2L_11_770001	chr2L_770001	KT6_1-HE
21	chr2L	976878	976907	chr2L	984515	984544	roo	11	7637	6.0	3.0	4.5	2.0	7666	chr2L	976878	intergenic	not near genes	chr2L	980711	intergenic	not near genes	chr2L	984544	intergenic	not near genes	chr2L_11_980001	chr2L_980001	KT6_1-HE
22	chr2L	996721	996753	chr2L	1005817	1005849	roo	6	9096	3.0	3.0	3.0	1.5	9128	chr2L	996721	intergenic	not near genes	chr2L	1001285	intergenic	not near genes	chr2L	1005849	intergenic	not near genes	chr2L_6_1000001	chr2L_1000001	KT6_1-HE
25	chr2L	1220128	1220158	chr2L	1227595	1227614	blood	12	7466	7.5	8.0	7.8	1.4	7486	chr2L	1220128	intron	CG42329 +	chr2L	1223871	intron	CG42329 +	chr2L	1227614	intron	CG42329 +	chr2L_12_1220001	chr2L_1220001	KT6_1-HE
27	chr2L	1301751	1301782	chr2L	1302291	1302322	gypsy	11	540	7.5	9.5	8.5	1.2	571	chr2L	1301751	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302322	intergenic	not near genes	chr2L_11_1300001	chr2L_1300001	KT6_1-HE
35	chr2L	1570686	1570720	chr2L	1573559	1573587	F-element	16	2873	6.0	5.5	5.8	2.4	2901	chr2L	1570686	intron	haf +	chr2L	1572136	intron	haf +	chr2L	1573587	intron	haf +	chr2L_16_1570001	chr2L_1570001	KT6_1-HE
40	chr2L	1678978	1679006	chr2L	1686444	1686472	blood	12	7466	4.5	6.0	5.2	1.9	7494	chr2L	1678978	intron	chinmo +	chr2L	1682725	intron	chinmo +	chr2L	1686472	intron	chinmo +	chr2L_12_1680001	chr2L_1680001	KT6_1-HE
41	chr2L	1711353	1711388	chr2L	1711678	1711713	mdg3	10	325	1.5	3.5	2.5	2.9	360	chr2L	1711353	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711533	3` UTR	frtz -	chr2L	1711713	3` UTR	frtz -	chr2L_10_1710001	chr2L_1710001	KT6_1-HE
53	chr2L	2100376	2100406	chr2L	2109528	2109551	roo	16	9151	11.5	7.0	9.2	1.6	9175	chr2L	2100376	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_16_2100001	chr2L_2100001	KT6_1-HE
54	chr2L	2112118	2112134	chr2L	2119781	2119797	opus	9	7663	3.5	6.5	5.0	1.5	7679	chr2L	2112118	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119797	intergenic	not near genes	chr2L_9_2115001	chr2L_2115001	KT6_1-HE
58	chr2L	2294044	2294072	chr2L	2299250	2299278	copia	6	5205	4.5	7.0	5.8	0.9	5234	chr2L	2294044	intergenic	not near genes	chr2L	2296661	intergenic	not near genes	chr2L	2299278	intergenic	not near genes	chr2L_6_2295001	chr2L_2295001	KT6_1-HE
66	chr2L	2661223	2661230	chr2L	2663031	2663069	I-element	7	1825	3.0	6.0	4.5	1.3	1846	chr2L	2661223	intergenic	not near genes	chr2L	2662146	intergenic	not near genes	chr2L	2663069	intergenic	not near genes	chr2L_7_2660001	chr2L_2660001	KT6_1-HE
75	chr2L	2933290	2933319	chr2L	2935478	2935507	pogo	19	2186	12.5	7.0	9.8	1.8	2217	chr2L	2933290	intron	lilli +	chr2L	2934398	intron	lilli +	chr2L	2935507	intron	lilli +	chr2L_19_2930001	chr2L_2930001	KT6_1-HE
76	chr2L	3073042	3073048	chr2L	3078238	3078244	copia	4	5196	1.0	4.5	2.8	1.1	5202	chr2L	3073042	intron	toc -	chr2L	3075643	intron	toc -	chr2L	3078244	intron	toc -	chr2L_4_3075001	chr2L_3075001	KT6_1-HE
77	chr2L	3073049	3073053	chr2L	3078237	3078249	copia	4	5194	0.5	4.5	2.5	1.1	5200	chr2L	3073049	intron	toc -	chr2L	3075649	intron	toc -	chr2L	3078249	intron	toc -	chr2L_4_3075001	chr2L_3075001	KT6_1-HE
83	chr2L	3202736	3202768	chr2L	3210166	3210198	mdg1	14	7430	0.0	1.0	0.5	9.3	7462	chr2L	3202736	intergenic	not near genes	chr2L	3206467	intergenic	not near genes	chr2L	3210198	intergenic	CR45336 +	chr2L_14_3205001	chr2L_3205001	KT6_1-HE
84	chr2L	3251493	3251526	chr2L	3259059	3259092	springer	11	7566	3.0	3.5	3.2	2.6	7599	chr2L	3251493	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259092	intergenic	not near genes	chr2L_11_3255001	chr2L_3255001	KT6_1-HE
87	chr2L	3388597	3388631	chr2L	3388839	3388873	pogo	8	242	2.5	1.0	1.8	2.9	276	chr2L	3388597	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388873	intergenic	CG42460 -,CR44791 +	chr2L_8_3385001	chr2L_3385001	KT6_1-HE
94	chr2L	3649787	3649794	chr2L	3654990	3654997	copia	4	5203	0.0	3.5	1.8	1.4	5210	chr2L	3649787	intron	for -	chr2L	3652392	intron	for -	chr2L	3654997	intron	for -	chr2L_4_3650001	chr2L_3650001	KT6_1-HE
108	chr2L	4066039	4066050	chr2L	4068865	4068876	Juan	8	2826	12.5	7.5	10.0	0.7	2837	chr2L	4066039	intron	ed +	chr2L	4067458	intron	ed +	chr2L	4068876	intron	ed +	chr2L_8_4065001	chr2L_4065001	KT6_1-HE
109	chr2L	4066052	4066058	chr2L	4068864	4068884	Juan	6	2824	10.0	7.0	8.5	0.6	2832	chr2L	4066052	intron	ed +	chr2L	4067468	intron	ed +	chr2L	4068884	intron	ed +	chr2L_6_4065001	chr2L_4065001	KT6_1-HE
113	chr2L	4181294	4181296	chr2L	4183928	4183930	Burdock	5	2634	4.5	0.0	2.2	1.6	2636	chr2L	4181294	intergenic	not near genes	chr2L	4182612	intergenic	not near genes	chr2L	4183930	intergenic	not near genes	chr2L_5_4180001	chr2L_4180001	KT6_1-HE
116	chr2L	4601703	4601730	chr2L	4609145	4609172	mdg1	10	7442	3.5	3.5	3.5	2.2	7469	chr2L	4601703	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609172	intron	dp -	chr2L_10_4605001	chr2L_4605001	KT6_1-HE
128	chr2L	5342767	5342799	chr2L	5345148	5345180	Doc	9	2380	0.0	2.5	1.2	4.1	2413	chr2L	5342767	intergenic	not near genes	chr2L	5343974	intergenic	not near genes	chr2L	5345180	intergenic	not near genes	chr2L_9_5340001	chr2L_5340001	KT6_1-HE
140	chr2L	5827709	5827735	chr2L	5836718	5836744	roo	9	9009	2.5	1.5	2.0	3.0	9035	chr2L	5827709	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836744	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	KT6_1-HE
161	chr2L	6363147	6363183	chr2L	6366070	6366106	Burdock	5	2918	2.5	2.5	2.5	1.4	2959	chr2L	6363147	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366106	intergenic	not near genes	chr2L_5_6360001	chr2L_6360001	KT6_1-HE
165	chr2L	6426853	6426882	chr2L	6445114	6445143	roo	5	18261	1.0	1.5	1.2	2.3	18290	chr2L	6426853	3` UTR	CG9527 -	chr2L	6435998	intron	CG9527 -	chr2L	6445143	exon	CG9527 -	chr2L_5_6435001	chr2L_6435001	KT6_1-HE
173	chr2L	6876777	6876809	chr2L	6882969	6882979	diver	10	6189	7.0	6.0	6.5	1.3	6202	chr2L	6876777	intron	Nlg2 +	chr2L	6879878	intron	Nlg2 +	chr2L	6882979	intron	Nlg2 +	chr2L_10_6875001	chr2L_6875001	KT6_1-HE
187	chr2L	7343322	7343358	chr2L	7350439	7350474	roo	13	7117	7.5	4.0	5.8	1.9	7152	chr2L	7343322	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_13_7345001	chr2L_7345001	KT6_1-HE
197	chr2L	7959040	7959071	chr2L	7960452	7960483	pogo	6	1412	3.5	2.0	2.8	1.6	1443	chr2L	7959040	intron	Snoo -	chr2L	7959762	intron	Snoo -	chr2L	7960483	intron	Snoo -	chr2L_6_7955001	chr2L_7955001	KT6_1-HE
211	chr2L	8594468	8594498	chr2L	8601523	8601553	297	5	7055	2.0	3.0	2.5	1.4	7085	chr2L	8594468	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598010	intron	Sema-1a +	chr2L	8601553	intron	Sema-1a +	chr2L_5_8595001	chr2L_8595001	KT6_1-HE
213	chr2L	8723123	8723148	chr2L	8731501	8731526	Tirant	8	8378	2.5	4.5	3.5	1.8	8403	chr2L	8723123	intron	raw -	chr2L	8727324	intron	raw -	chr2L	8731526	intron	raw -	chr2L_8_8725001	chr2L_8725001	KT6_1-HE
223	chr2L	9000285	9000298	chr2L	9007804	9007810	roo	8	7518	6.0	1.0	3.5	1.8	7525	chr2L	9000285	intergenic	Try29F +	chr2L	9004048	intergenic	not near genes	chr2L	9007810	intergenic	not near genes	chr2L_8_9000001	chr2L_9000001	KT6_1-HE
242	chr2L	9393496	9393531	chr2L	9396464	9396499	jockey	22	2968	4.0	4.5	4.2	4.2	3003	chr2L	9393496	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396499	intron	Shawl -	chr2L_22_9390001	chr2L_9390001	KT6_1-HE
254	chr2L	9973725	9973758	chr2L	9980844	9980878	HMS-Beagle	13	7119	4.5	4.5	4.5	2.4	7153	chr2L	9973725	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980878	intergenic	not near genes	chr2L_13_9975001	chr2L_9975001	KT6_1-HE
261	chr2L	10156320	10156354	chr2L	10163791	10163825	blood	13	7470	5.0	2.0	3.5	2.9	7505	chr2L	10156320	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163825	intron	CG44153 -	chr2L_13_10160001	chr2L_10160001	KT6_1-HE
272	chr2L	10592840	10592875	chr2L	10600503	10600537	opus	15	7663	7.0	6.0	6.5	2.0	7697	chr2L	10592840	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600537	intron	Trim9 +	chr2L_15_10595001	chr2L_10595001	KT6_1-HE
284	chr2L	10862855	10862873	chr2L	10864455	10864488	Rt1c	7	1613	3.0	2.5	2.8	1.8	1633	chr2L	10862855	3` UTR	CR43807 -	chr2L	10863672	intron	CR43807 -	chr2L	10864488	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	KT6_1-HE
288	chr2L	10946947	10946977	chr2L	10956163	10956193	roo	17	9215	2.5	12.0	7.2	2.1	9246	chr2L	10946947	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956193	intron	dpr2 -	chr2L_17_10950001	chr2L_10950001	KT6_1-HE
307	chr2L	11540580	11540615	chr2L	11547983	11548018	Tabor	17	7402	5.0	5.5	5.2	2.7	7438	chr2L	11540580	intergenic	not near genes	chr2L	11544299	intergenic	not near genes	chr2L	11548018	intergenic	not near genes	chr2L_17_11540001	chr2L_11540001	KT6_1-HE
310	chr2L	11563642	11563669	chr2L	11568847	11568874	copia	15	5205	4.0	6.5	5.2	2.4	5232	chr2L	11563642	intergenic	not near genes	chr2L	11566258	intergenic	not near genes	chr2L	11568874	intergenic	not near genes	chr2L_15_11565001	chr2L_11565001	KT6_1-HE
313	chr2L	11614055	11614085	chr2L	11615550	11615581	hopper2	8	1493	3.0	3.0	3.0	2.0	1526	chr2L	11614055	intron	kek2 +	chr2L	11614818	intron	kek2 +	chr2L	11615581	intron	kek2 +	chr2L_8_11610001	chr2L_11610001	KT6_1-HE
319	chr2L	11713506	11713539	chr2L	11720975	11721008	blood	16	7468	4.0	3.5	3.8	3.3	7502	chr2L	11713506	intergenic	not near genes	chr2L	11717257	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_16_11715001	chr2L_11715001	KT6_1-HE
324	chr2L	12067332	12067352	chr2L	12074385	12074405	297	4	7053	4.0	4.5	4.2	0.8	7073	chr2L	12067332	intergenic	not near genes	chr2L	12070868	intergenic	not near genes	chr2L	12074405	intergenic	not near genes	chr2L_4_12070001	chr2L_12070001	KT6_1-HE
333	chr2L	12558321	12558352	chr2L	12565451	12565482	HMS-Beagle	9	7130	2.0	6.0	4.0	1.8	7161	chr2L	12558321	intergenic	not near genes	chr2L	12561902	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_9_12560001	chr2L_12560001	KT6_1-HE
335	chr2L	12728920	12728944	chr2L	12729161	12729185	pogo	9	241	10.0	9.0	9.5	0.9	265	chr2L	12728920	intron	MRP +	chr2L	12729052	intron	MRP +	chr2L	12729185	exon	MRP +	chr2L_9_12725001	chr2L_12725001	KT6_1-HE
336	chr2L	12731070	12731089	chr2L	12735822	12735857	F-element	8	4766	2.0	6.0	4.0	1.6	4787	chr2L	12731070	intron	MRP +	chr2L	12733464	intron	MRP +	chr2L	12735857	intron	MRP +	chr2L_8_12730001	chr2L_12730001	KT6_1-HE
338	chr2L	12739175	12739204	chr2L	12743957	12743986	Doc	11	4782	3.5	9.0	6.2	1.5	4811	chr2L	12739175	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743986	exon	MRP +	chr2L_11_12740001	chr2L_12740001	KT6_1-HE
340	chr2L	12781801	12781813	chr2L	12789245	12789257	Quasimodo	11	7444	15.5	14.0	14.8	0.7	7456	chr2L	12781801	intergenic	not near genes	chr2L	12785529	intergenic	not near genes	chr2L	12789257	intergenic	not near genes	chr2L_11_12785001	chr2L_12785001	KT6_1-HE
341	chr2L	12791603	12791607	chr2L	12795277	12795283	F-element	6	3676	31.5	12.0	21.8	0.3	3680	chr2L	12791603	intergenic	not near genes	chr2L	12793443	intergenic	not near genes	chr2L	12795283	intergenic	not near genes	chr2L_6_12790001	chr2L_12790001	KT6_1-HE
342	chr2L	12791609	12791635	chr2L	12795276	12795311	F-element	22	3673	16.0	12.0	14.0	1.5	3702	chr2L	12791609	intergenic	not near genes	chr2L	12793460	intergenic	not near genes	chr2L	12795311	intergenic	not near genes	chr2L_22_12790001	chr2L_12790001	KT6_1-HE
345	chr2L	12861692	12861728	chr2L	12863160	12863196	hobo	11	1466	6.0	5.0	5.5	1.7	1504	chr2L	12861692	intergenic	not near genes	chr2L	12862444	intergenic	not near genes	chr2L	12863196	intergenic	not near genes	chr2L_11_12860001	chr2L_12860001	KT6_1-HE
346	chr2L	12894019	12894054	chr2L	12895487	12895522	hobo	12	1468	7.0	7.0	7.0	1.5	1503	chr2L	12894019	intergenic	not near genes	chr2L	12894770	intergenic	not near genes	chr2L	12895522	intergenic	not near genes	chr2L_12_12890001	chr2L_12890001	KT6_1-HE
347	chr2L	12933847	12933883	chr2L	12941315	12941351	blood	19	7467	8.5	7.0	7.8	2.2	7504	chr2L	12933847	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941351	intergenic	not near genes	chr2L_19_12935001	chr2L_12935001	KT6_1-HE
349	chr2L	13036241	13036274	chr2L	13036484	13036517	X-element	18	243	1.5	2.5	2.0	6.0	276	chr2L	13036241	intron	CG9932 -	chr2L	13036379	intron	CG9932 -	chr2L	13036517	intron	CG9932 -	chr2L_18_13035001	chr2L_13035001	KT6_1-HE
355	chr2L	13405648	13405678	chr2L	13410446	13410476	Doc	16	4796	4.0	7.5	5.8	2.4	4828	chr2L	13405648	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410476	intron	CG7110 +	chr2L_16_13405001	chr2L_13405001	KT6_1-HE
356	chr2L	13449459	13449494	chr2L	13456896	13456931	Quasimodo	5	7437	0.0	3.5	1.8	1.8	7472	chr2L	13449459	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453195	intron	CG42784 +	chr2L	13456931	intron	CG42784 +	chr2L_5_13450001	chr2L_13450001	KT6_1-HE
359	chr2L	13481452	13481472	chr2L	13482060	13482080	jockey	13	608	16.5	19.0	17.8	0.7	628	chr2L	13481452	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482080	intron	CG42784 +	chr2L_13_13480001	chr2L_13480001	KT6_1-HE
364	chr2L	13761803	13761829	chr2L	13762915	13762941	Doc	8	1112	7.0	4.0	5.5	1.2	1138	chr2L	13761803	intron	TM9SF4 +	chr2L	13762372	intron	TM9SF4 +	chr2L	13762941	intron	TM9SF4 +	chr2L_8_13760001	chr2L_13760001	KT6_1-HE
366	chr2L	13853081	13853116	chr2L	13862232	13862267	roo	20	9150	2.0	4.5	3.2	4.8	9186	chr2L	13853081	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862267	intron	CenG1A +	chr2L_20_13855001	chr2L_13855001	KT6_1-HE
381	chr2L	14642569	14642603	chr2L	14651733	14651767	roo	16	9164	3.5	5.5	4.5	2.9	9198	chr2L	14642569	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651767	intron	osp -	chr2L_16_14645001	chr2L_14645001	KT6_1-HE
386	chr2L	14803880	14803912	chr2L	14809084	14809116	copia	21	5204	3.0	7.5	5.2	3.4	5236	chr2L	14803880	intergenic	not near genes	chr2L	14806498	intergenic	not near genes	chr2L	14809116	intergenic	not near genes	chr2L_21_14805001	chr2L_14805001	KT6_1-HE
390	chr2L	14889951	14889988	chr2L	14890377	14890414	jockey	29	426	6.5	4.0	5.2	4.7	463	chr2L	14889951	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890414	intergenic	not near genes	chr2L_29_14890001	chr2L_14890001	KT6_1-HE
408	chr2L	15446048	15446084	chr2L	15453518	15453554	blood	23	7469	4.5	3.0	3.8	4.8	7506	chr2L	15446048	intergenic	not near genes	chr2L	15449801	intergenic	not near genes	chr2L	15453554	intergenic	not near genes	chr2L_23_15445001	chr2L_15445001	KT6_1-HE
411	chr2L	15586409	15586442	chr2L	15593462	15593495	297	19	7052	4.0	5.0	4.5	3.5	7086	chr2L	15586409	intergenic	not near genes	chr2L	15589952	intergenic	not near genes	chr2L	15593495	intergenic	not near genes	chr2L_19_15585001	chr2L_15585001	KT6_1-HE
425	chr2L	15956021	15956057	chr2L	15957489	15957525	hobo	33	1467	11.5	9.5	10.5	2.9	1504	chr2L	15956021	intron	beat-Ib -	chr2L	15956773	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_33_15955001	chr2L_15955001	KT6_1-HE
433	chr2L	16141169	16141193	chr2L	16146377	16146401	copia	13	5208	0.0	6.0	3.0	3.2	5232	chr2L	16141169	intergenic	not near genes	chr2L	16143785	intergenic	not near genes	chr2L	16146401	intergenic	not near genes	chr2L_13_16140001	chr2L_16140001	KT6_1-HE
434	chr2L	16153733	16153749	chr2L	16160788	16160804	297	8	7055	11.5	5.0	8.2	0.9	7071	chr2L	16153733	intergenic	not near genes	chr2L	16157268	intergenic	not near genes	chr2L	16160804	intergenic	not near genes	chr2L_8_16155001	chr2L_16155001	KT6_1-HE
439	chr2L	16280258	16280283	chr2L	16281427	16281452	1360	5	1169	2.0	2.5	2.2	1.6	1194	chr2L	16280258	intron	crp -	chr2L	16280855	intron	crp -	chr2L	16281452	intron	crp -	chr2L_5_16280001	chr2L_16280001	KT6_1-HE
457	chr2L	16958101	16958136	chr2L	16962889	16962925	Doc	20	4789	6.5	6.5	6.5	2.7	4824	chr2L	16958101	intergenic	not near genes	chr2L	16960513	intergenic	not near genes	chr2L	16962925	intergenic	not near genes	chr2L_20_16960001	chr2L_16960001	KT6_1-HE
466	chr2L	17167565	17167582	chr2L	17167807	17167824	pogo	10	242	7.5	3.5	5.5	1.5	259	chr2L	17167565	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167694	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167824	intron,intron	CG34106 +,beat-IIIa +	chr2L_10_17165001	chr2L_17165001	KT6_1-HE
468	chr2L	17199156	17199191	chr2L	17200624	17200659	hobo	8	1468	5.0	5.0	5.0	1.3	1503	chr2L	17199156	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200659	intron	beat-IIIc -	chr2L_8_17195001	chr2L_17195001	KT6_1-HE
472	chr2L	17273189	17273226	chr2L	17277973	17278010	F-element	17	4783	4.0	5.0	4.5	3.1	4821	chr2L	17273189	intergenic	not near genes	chr2L	17275600	intergenic	not near genes	chr2L	17278010	intergenic	not near genes	chr2L_17_17275001	chr2L_17275001	KT6_1-HE
482	chr2L	17432019	17432036	chr2L	17432127	17432138	1360	4	106	0.0	0.5	0.2	3.3	119	chr2L	17432019	intron	Dif -	chr2L	17432078	intron	Dif -	chr2L	17432138	intron	Dif -	chr2L_4_17430001	chr2L_17430001	KT6_1-HE
488	chr2L	17687515	17687522	chr2L	17692261	17692268	F-element	6	4746	10.5	7.0	8.8	0.6	4753	chr2L	17687515	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692268	intron	CadN -	chr2L_6_17685001	chr2L_17685001	KT6_1-HE
490	chr2L	17727756	17727790	chr2L	17729446	17729480	hobo	21	1689	5.5	6.5	6.0	3.0	1724	chr2L	17727756	intron	CadN -	chr2L	17728618	intron	CadN -	chr2L	17729480	intron	CadN -	chr2L_21_17725001	chr2L_17725001	KT6_1-HE
491	chr2L	17819920	17819956	chr2L	17825124	17825160	copia	15	5204	2.5	5.0	3.8	3.1	5240	chr2L	17819920	intron	CadN2 -	chr2L	17822540	intron	CadN2 -	chr2L	17825160	intron	CadN2 -	chr2L_15_17820001	chr2L_17820001	KT6_1-HE
494	chr2L	17911954	17911988	chr2L	17914141	17914175	pogo	15	2186	6.5	5.5	6.0	2.1	2221	chr2L	17911954	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914175	intergenic	CG43271 -	chr2L_15_17910001	chr2L_17910001	KT6_1-HE
496	chr2L	17951944	17951980	chr2L	17953412	17953448	hobo	12	1468	6.5	9.0	7.8	1.4	1504	chr2L	17951944	intergenic	CR44398 -,CR44397 -	chr2L	17952696	intergenic	not near genes	chr2L	17953448	intergenic	not near genes	chr2L_12_17950001	chr2L_17950001	KT6_1-HE
500	chr2L	18051875	18051906	chr2L	18061023	18061054	roo	23	9146	8.0	8.5	8.2	2.5	9179	chr2L	18051875	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061054	intron	rdo +	chr2L_23_18055001	chr2L_18055001	KT6_1-HE
513	chr2L	18408026	18408054	chr2L	18412811	18412839	Doc	15	4785	8.5	0.0	4.2	2.9	4813	chr2L	18408026	intergenic	not near genes	chr2L	18410432	intergenic	not near genes	chr2L	18412839	intergenic	not near genes	chr2L_15_18410001	chr2L_18410001	KT6_1-HE
526	chr2L	19147385	19147401	chr2L	19154405	19154437	297	6	7033	2.0	3.5	2.8	1.6	7052	chr2L	19147385	intron	brat +	chr2L	19150911	intron	brat +	chr2L	19154437	intron	brat +	chr2L_6_19150001	chr2L_19150001	KT6_1-HE
532	chr2L	19345026	19345046	chr2L	19357236	19357256	blood	14	12210	5.5	6.5	6.0	2.0	12230	chr2L	19345026	intron	dnt -	chr2L	19351141	intron	dnt -	chr2L	19357256	intron	dnt -	chr2L_14_19350001	chr2L_19350001	KT6_1-HE
540	chr2L	19620096	19620123	chr2L	19621081	19621113	jockey	18	986	12.0	8.0	10.0	1.6	1017	chr2L	19620096	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621113	intron	Lar +	chr2L_18_19620001	chr2L_19620001	KT6_1-HE
542	chr2L	19652569	19652604	chr2L	19674004	19674039	opus	25	21435	7.5	5.5	6.5	3.3	21470	chr2L	19652569	intron	Lar +	chr2L	19663304	intron	Lar +	chr2L	19674039	intron	Lar +	chr2L_25_19660001	chr2L_19660001	KT6_1-HE
543	chr2L	19703535	19703570	chr2L	19712672	19712706	roo	20	9137	10.0	9.0	9.5	1.9	9171	chr2L	19703535	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712706	intron	Lar +	chr2L_20_19705001	chr2L_19705001	KT6_1-HE
551	chr2L	20005874	20005903	chr2L	20010951	20010980	flea	10	5077	5.0	7.0	6.0	1.4	5106	chr2L	20005874	intron	CG43861 -	chr2L	20008427	intron	CG43861 -	chr2L	20010980	intron	CG43861 -	chr2L_10_20005001	chr2L_20005001	KT6_1-HE
559	chr2L	20303160	20303193	chr2L	20310629	20310650	blood	10	7468	0.5	7.0	3.8	2.1	7490	chr2L	20303160	intergenic	not near genes	chr2L	20306905	intergenic	not near genes	chr2L	20310650	intergenic	not near genes	chr2L_10_20305001	chr2L_20305001	KT6_1-HE
560	chr2L	20372226	20372240	chr2L	20372468	20372482	pogo	5	242	1.0	3.5	2.2	1.6	256	chr2L	20372226	intergenic	Ugt37a1 -	chr2L	20372354	intergenic	Ugt37a1 -	chr2L	20372482	exon	Ugt37a1 -	chr2L_5_20370001	chr2L_20370001	KT6_1-HE
570	chr2L	20568659	20568684	chr2L	20569050	20569075	X-element	15	391	6.0	2.0	4.0	3.0	416	chr2L	20568659	intron	CR45347 +	chr2L	20568867	intron	CR45347 +	chr2L	20569075	intron	CR45347 +	chr2L_15_20565001	chr2L_20565001	KT6_1-HE
571	chr2L	20576217	20576250	chr2L	20583686	20583719	blood	21	7469	5.5	5.5	5.5	3.2	7502	chr2L	20576217	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_21_20575001	chr2L_20575001	KT6_1-HE
578	chr2L	20835810	20835836	chr2L	20836528	20836554	Quasimodo	9	718	4.5	4.0	4.2	1.7	744	chr2L	20835810	5` UTR	Oseg5 -	chr2L	20836182	intergenic	Oseg5 -,Spn38F -	chr2L	20836554	intergenic	Spn38F -	chr2L_9_20835001	chr2L_20835001	KT6_1-HE
579	chr2L	20901460	20901479	chr2L	20902625	20902644	1360	6	1164	9.0	5.0	7.0	0.8	1184	chr2L	20901460	intron,intron	CG43739 -,sky -	chr2L	20902052	intron,intron	CG43739 -,sky -	chr2L	20902644	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	KT6_1-HE
580	chr2L	20976648	20976674	chr2L	20981464	20981490	X-element	10	4816	3.5	6.0	4.8	1.7	4842	chr2L	20976648	intron	CG42238 -	chr2L	20979069	intron	CG42238 -	chr2L	20981490	intron	CG42238 -	chr2L_10_20975001	chr2L_20975001	KT6_1-HE
582	chr2L	21020278	21020309	chr2L	21023956	21023987	NOF	11	3678	3.5	10.0	6.8	1.4	3709	chr2L	21020278	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023987	intron	CG42238 -	chr2L_11_21020001	chr2L_21020001	KT6_1-HE
583	chr2L	21041132	21041168	chr2L	21049394	21049430	Tirant	15	8259	4.5	4.0	4.2	2.9	8298	chr2L	21041132	intron	CG42238 -	chr2L	21045281	intron	CG42238 -	chr2L	21049430	intron	CG42238 -	chr2L_15_21045001	chr2L_21045001	KT6_1-HE
590	chr2L	21347548	21347578	chr2L	21355021	21355051	blood	5	7473	3.5	4.0	3.8	1.0	7503	chr2L	21347548	intron	Tsp39D +	chr2L	21351300	intron	Tsp39D +	chr2L	21355051	intron	Tsp39D +	chr2L_5_21350001	chr2L_21350001	KT6_1-HE
592	chr2L	21597029	21597061	chr2L	21604773	21604806	roo	8	7744	2.0	4.0	3.0	2.0	7777	chr2L	21597029	intergenic	not near genes	chr2L	21600918	intergenic	not near genes	chr2L	21604806	intergenic	not near genes	chr2L_8_21600001	chr2L_21600001	KT6_1-HE
593	chr2L	21691832	21691856	chr2L	21698303	21698327	Burdock	5	6471	1.0	5.0	3.0	1.2	6495	chr2L	21691832	intron	CG31619 +	chr2L	21695080	intron	CG31619 +	chr2L	21698327	intron	CG31619 +	chr2L_5_21695001	chr2L_21695001	KT6_1-HE
601	chr2L	21981684	21981712	chr2L	21990850	21990878	roo	19	9165	4.0	9.0	6.5	2.5	9194	chr2L	21981684	exon	CG2528 -	chr2L	21986281	intron	CG2528 -	chr2L	21990878	exon	CG2528 -	chr2L_19_21985001	chr2L_21985001	KT6_1-HE
605	chr2L	22258614	22258645	chr2L	22260739	22260770	G6	19	2125	8.0	7.5	7.8	2.2	2156	chr2L	22258614	intergenic	Tif-IA +	chr2L	22259692	intergenic	not near genes	chr2L	22260770	intergenic	not near genes	chr2L_19_22255001	chr2L_22255001	KT6_1-HE
611	chr2L	22548923	22548943	chr2L	22550149	22550169	1360	13	1226	0.0	5.0	2.5	3.7	1246	chr2L	22548923	intergenic	CG17490 +	chr2L	22549546	intergenic	not near genes	chr2L	22550169	intergenic	CG17493 +	chr2L_13_22545001	chr2L_22545001	KT6_1-HE
612	chr2L	22581971	22581999	chr2L	22583761	22583789	S-element	10	1790	1.5	2.0	1.8	3.6	1818	chr2L	22581971	intron	CG17494 +	chr2L	22582880	intron	CG17494 +	chr2L	22583789	intron	CG17494 +	chr2L_10_22580001	chr2L_22580001	KT6_1-HE
613	chr2L	22679801	22679828	chr2L	22684574	22684601	F-element	11	4772	4.0	5.0	4.5	2.0	4800	chr2L	22679801	intron	CG40006 -	chr2L	22682201	intron	CG40006 -	chr2L	22684601	intron	CG40006 -	chr2L_11_22680001	chr2L_22680001	KT6_1-HE
616	chr2L	22776419	22776451	chr2L	22778209	22778241	S-element	7	1790	3.5	2.0	2.8	1.8	1822	chr2L	22776419	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778241	intergenic	not near genes	chr2L_7_22775001	chr2L_22775001	KT6_1-HE
617	chr2L	23007005	23007020	chr2L	23007096	23007112	Osvaldo	10	92	5.0	3.5	4.2	1.9	107	chr2L	23007005	intron	Cht3 -	chr2L	23007058	intron	Cht3 -	chr2L	23007112	intron	Cht3 -	chr2L_10_23005001	chr2L_23005001	KT6_1-HE
618	chr2R	529320	529357	chr2R	537946	537983	Max-element	14	8624	3.0	4.0	3.5	3.1	8663	chr2R	529320	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537983	intron	CG40378 +	chr2R_14_530001	chr2R_530001	KT6_1-HE
619	chr2R	552755	552770	chr2R	553974	553981	1360	7	1218	14.0	11.0	12.5	0.5	1226	chr2R	552755	intron	CG40378 +	chr2R	553368	intron	CG40378 +	chr2R	553981	intron	CG40378 +	chr2R_7_550001	chr2R_550001	KT6_1-HE
620	chr2R	552772	552787	chr2R	553972	554002	1360	12	1211	7.5	11.0	9.2	1.2	1230	chr2R	552772	intron	CG40378 +	chr2R	553387	intron	CG40378 +	chr2R	554002	intron	CG40378 +	chr2R_12_550001	chr2R_550001	KT6_1-HE
621	chr2R	1082366	1082385	chr2R	1087143	1087162	Doc	14	4775	8.5	7.5	8.0	1.6	4796	chr2R	1082366	intron	rl +	chr2R	1084764	intron	rl +	chr2R	1087162	intron	rl +	chr2R_14_1080001	chr2R_1080001	KT6_1-HE
627	chr2R	2498986	2499018	chr2R	2508134	2508166	roo	8	9148	1.5	5.0	3.2	1.9	9180	chr2R	2498986	intron	MFS17 -	chr2R	2503576	intron	MFS17 -	chr2R	2508166	intron	MFS17 -	chr2R_8_2500001	chr2R_2500001	KT6_1-HE
628	chr2R	2591552	2591559	chr2R	2594229	2594235	roo	4	2677	18.0	14.5	16.2	0.2	2683	chr2R	2591552	intergenic	not near genes	chr2R	2592894	intergenic	not near genes	chr2R	2594235	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	KT6_1-HE
630	chr2R	3526648	3526655	chr2R	3531379	3531386	F-element	4	4731	4.0	2.0	3.0	1.0	4738	chr2R	3526648	intergenic	not near genes	chr2R	3529017	intergenic	not near genes	chr2R	3531386	intergenic	not near genes	chr2R_4_3525001	chr2R_3525001	KT6_1-HE
633	chr2R	4622953	4622988	chr2R	4624110	4624148	1360	17	1157	2.5	7.5	5.0	2.8	1195	chr2R	4622953	intergenic	CR44101 -	chr2R	4623550	intergenic	not near genes	chr2R	4624148	intergenic	not near genes	chr2R_17_4620001	chr2R_4620001	KT6_1-HE
635	chr2R	4750340	4750376	chr2R	4751498	4751534	1360	8	1158	0.5	2.5	1.5	3.2	1194	chr2R	4750340	intron	conu +	chr2R	4750937	intron	conu +	chr2R	4751534	intron	conu +	chr2R_8_4750001	chr2R_4750001	KT6_1-HE
652	chr2R	5417992	5418027	chr2R	5420625	5420660	Burdock	12	2633	3.0	3.5	3.2	2.9	2668	chr2R	5417992	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420660	intron	laccase2 +	chr2R_12_5415001	chr2R_5415001	KT6_1-HE
660	chr2R	5543198	5543222	chr2R	5547283	5547307	invader1	12	4084	0.0	7.5	3.8	2.5	4109	chr2R	5543198	intron	CG30438 +	chr2R	5545252	intron	CG30438 +	chr2R	5547307	intron	CG30438 +	chr2R_12_5545001	chr2R_5545001	KT6_1-HE
666	chr2R	5869275	5869308	chr2R	5874352	5874385	flea	16	5077	3.5	6.0	4.8	2.8	5110	chr2R	5869275	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874385	intergenic	not near genes	chr2R_16_5870001	chr2R_5870001	KT6_1-HE
668	chr2R	5902154	5902182	chr2R	5909714	5909742	17.6	15	7560	7.5	3.0	5.2	2.4	7588	chr2R	5902154	intron	CG43366 +	chr2R	5905948	intron	CG43366 +	chr2R	5909742	intron	CG43366 +	chr2R_15_5905001	chr2R_5905001	KT6_1-HE
671	chr2R	6096713	6096750	chr2R	6101912	6101948	BS	9	5196	2.5	3.0	2.8	2.4	5235	chr2R	6096713	intron	EcR -	chr2R	6099330	intron	EcR -	chr2R	6101948	intron	EcR -	chr2R_9_6095001	chr2R_6095001	KT6_1-HE
675	chr2R	6494526	6494553	chr2R	6499288	6499316	F-element	7	4763	3.5	1.5	2.5	2.0	4790	chr2R	6494526	intergenic	not near genes	chr2R	6496921	intergenic	not near genes	chr2R	6499316	intergenic	not near genes	chr2R_7_6495001	chr2R_6495001	KT6_1-HE
678	chr2R	6579772	6579805	chr2R	6584858	6584893	flea	9	5088	3.0	0.0	1.5	3.6	5121	chr2R	6579772	intron	jing +	chr2R	6582332	intron	jing +	chr2R	6584893	intron	jing +	chr2R_9_6580001	chr2R_6580001	KT6_1-HE
689	chr2R	7196571	7196601	chr2R	7201347	7201377	F-element	12	4776	1.5	3.0	2.2	3.8	4806	chr2R	7196571	intron	pk +	chr2R	7198974	intron	pk +	chr2R	7201377	intron	pk +	chr2R_12_7195001	chr2R_7195001	KT6_1-HE
690	chr2R	7209844	7209871	chr2R	7217593	7217620	roo	10	7749	4.0	4.0	4.0	2.0	7776	chr2R	7209844	intron	pk +	chr2R	7213732	intron	pk +	chr2R	7217620	intron	pk +	chr2R_10_7210001	chr2R_7210001	KT6_1-HE
691	chr2R	7235818	7235848	chr2R	7240911	7240941	jockey	4	5093	2.0	1.5	1.8	1.4	5123	chr2R	7235818	intergenic	not near genes	chr2R	7238380	intergenic	not near genes	chr2R	7240941	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	KT6_1-HE
694	chr2R	7434894	7434904	chr2R	7439196	7439206	Juan	4	4302	2.5	4.0	3.2	1.0	4312	chr2R	7434894	intergenic	so +	chr2R	7437050	intergenic	not near genes	chr2R	7439206	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	KT6_1-HE
697	chr2R	7608406	7608433	chr2R	7613610	7613637	I-element	16	5204	6.5	0.0	3.2	3.8	5231	chr2R	7608406	intron	CG1358 -	chr2R	7611022	intron	CG1358 -	chr2R	7613637	intron	CG1358 -	chr2R_16_7610001	chr2R_7610001	KT6_1-HE
702	chr2R	7869189	7869212	chr2R	7873976	7873999	Doc	12	4787	8.0	8.5	8.2	1.3	4810	chr2R	7869189	intron	Dgk -	chr2R	7871594	intron	Dgk -	chr2R	7873999	intron	Dgk -	chr2R_12_7870001	chr2R_7870001	KT6_1-HE
711	chr2R	8330861	8330892	chr2R	8331348	8331379	roo	16	487	3.0	7.0	5.0	2.7	518	chr2R	8330861	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331379	intron	pdm3 +	chr2R_16_8330001	chr2R_8330001	KT6_1-HE
719	chr2R	8566028	8566063	chr2R	8566981	8567016	1360	12	953	6.0	4.5	5.2	1.9	988	chr2R	8566028	5` UTR	Cyp6a14 -	chr2R	8566522	5` UTR	Cyp6a14 -	chr2R	8567016	5` UTR	Cyp6a14 -	chr2R_12_8565001	chr2R_8565001	KT6_1-HE
726	chr2R	8722761	8722795	chr2R	8723003	8723037	pogo	15	241	3.0	7.5	5.2	2.4	276	chr2R	8722761	intron	CG14767 -	chr2R	8722899	intron	CG14767 -	chr2R	8723037	intron	CG14767 -	chr2R_15_8720001	chr2R_8720001	KT6_1-HE
729	chr2R	8777932	8777939	chr2R	8784124	8784131	diver	4	6192	0.5	11.0	5.8	0.6	6199	chr2R	8777932	intergenic	not near genes	chr2R	8781032	intergenic	not near genes	chr2R	8784131	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	KT6_1-HE
736	chr2R	9151299	9151326	chr2R	9157770	9157797	Burdock	5	6471	0.5	1.0	0.8	2.8	6498	chr2R	9151299	exon	CG30345 +	chr2R	9154548	intergenic	not near genes	chr2R	9157797	intergenic	CG8008 -	chr2R_5_9150001	chr2R_9150001	KT6_1-HE
737	chr2R	9212693	9212722	chr2R	9213180	9213209	roo	18	486	3.0	3.0	3.0	4.5	516	chr2R	9212693	intergenic	CR45309 +	chr2R	9212951	intergenic	CR45309 +	chr2R	9213209	5` UTR	CR45309 +	chr2R_18_9210001	chr2R_9210001	KT6_1-HE
746	chr2R	9480075	9480109	chr2R	9490607	9490641	roo	15	10532	4.5	3.0	3.8	3.1	10566	chr2R	9480075	intergenic	not near genes	chr2R	9485358	intergenic	not near genes	chr2R	9490641	intergenic	not near genes	chr2R_15_9485001	chr2R_9485001	KT6_1-HE
752	chr2R	9726609	9726641	chr2R	9734161	9734193	17.6	11	7552	8.0	5.0	6.5	1.5	7584	chr2R	9726609	intron	sqa -	chr2R	9730401	intron	sqa -	chr2R	9734193	intron	sqa -	chr2R_11_9730001	chr2R_9730001	KT6_1-HE
754	chr2R	9871042	9871058	chr2R	9871529	9871545	roo	6	487	6.0	6.5	6.2	0.8	503	chr2R	9871042	intron	cbx -	chr2R	9871294	intron	cbx -	chr2R	9871545	intron,5` UTR	cbx -,CG18446 +	chr2R_6_9870001	chr2R_9870001	KT6_1-HE
755	chr2R	9945437	9945461	chr2R	9945634	9945658	BS	6	197	6.0	5.0	5.5	0.9	221	chr2R	9945437	intron	Mef2 -	chr2R	9945548	intron	Mef2 -	chr2R	9945658	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	KT6_1-HE
758	chr2R	10005845	10005883	chr2R	10007011	10007022	1360	8	1163	3.5	1.0	2.2	2.5	1177	chr2R	10005845	intron	Pka-R2 -	chr2R	10006434	intron	Pka-R2 -	chr2R	10007022	intron	Pka-R2 -	chr2R_8_10005001	chr2R_10005001	KT6_1-HE
764	chr2R	10176876	10176913	chr2R	10186044	10186081	roo	12	9166	4.0	6.0	5.0	2.0	9205	chr2R	10176876	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186081	intron	KCNQ -	chr2R_12_10180001	chr2R_10180001	KT6_1-HE
779	chr2R	10585577	10585589	chr2R	10594154	10594173	Tirant	8	8582	5.0	5.5	5.2	1.3	8596	chr2R	10585577	intron	psq +	chr2R	10589875	intron	psq +	chr2R	10594173	intron	psq +	chr2R_8_10585001	chr2R_10585001	KT6_1-HE
793	chr2R	10948025	10948060	chr2R	10955577	10955612	17.6	14	7551	1.0	5.5	3.2	3.3	7587	chr2R	10948025	intergenic	not near genes	chr2R	10951818	intergenic	not near genes	chr2R	10955612	intergenic	not near genes	chr2R_14_10950001	chr2R_10950001	KT6_1-HE
796	chr2R	11009815	11009847	chr2R	11018990	11019022	roo	16	9175	5.5	6.0	5.8	2.4	9207	chr2R	11009815	intron	luna -	chr2R	11014418	intron	luna -	chr2R	11019022	intron	luna -	chr2R_16_11010001	chr2R_11010001	KT6_1-HE
797	chr2R	11019883	11019900	chr2R	11024943	11024967	jockey	6	5065	6.0	5.0	5.5	0.9	5084	chr2R	11019883	intron	luna -	chr2R	11022425	intron	luna -	chr2R	11024967	intron	luna -	chr2R_6_11020001	chr2R_11020001	KT6_1-HE
804	chr2R	11207811	11207855	chr2R	11208005	11208045	BS	10	193	5.0	0.0	2.5	2.9	234	chr2R	11207811	intron	shn +	chr2R	11207928	intron	shn +	chr2R	11208045	intron	shn +	chr2R_10_11205001	chr2R_11205001	KT6_1-HE
810	chr2R	11415516	11415550	chr2R	11418666	11418699	opus	15	3149	3.5	5.0	4.2	2.9	3183	chr2R	11415516	intron	Drip -	chr2R	11417108	intron	Drip -	chr2R	11418699	intron	Drip -	chr2R_15_11415001	chr2R_11415001	KT6_1-HE
811	chr2R	11472649	11472680	chr2R	11473847	11473878	pogo	8	1198	1.5	2.0	1.8	2.9	1229	chr2R	11472649	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473878	intergenic	not near genes	chr2R_8_11470001	chr2R_11470001	KT6_1-HE
833	chr2R	12481145	12481159	chr2R	12482940	12482963	roo	9	1800	9.5	6.5	8.0	1.0	1818	chr2R	12481145	exon	Dh44-R2 +	chr2R	12482054	intron	Dh44-R2 +	chr2R	12482963	intron	Dh44-R2 +	chr2R_9_12480001	chr2R_12480001	KT6_1-HE
840	chr2R	12707516	12707547	chr2R	12715883	12715914	roo	10	8367	2.5	4.5	3.5	2.2	8398	chr2R	12707516	intron	CG42663 +	chr2R	12711715	intron	CG42663 +	chr2R	12715914	intron	CG42663 +	chr2R_10_12710001	chr2R_12710001	KT6_1-HE
845	chr2R	12789293	12789328	chr2R	12797656	12797669	roo	20	8361	2.0	6.0	4.0	4.0	8376	chr2R	12789293	intron,3` UTR	sca +,CR45137 -	chr2R	12793481	intron,intron	sca +,CR45137 -	chr2R	12797669	intron,3` UTR	sca +,CR45137 -	chr2R_20_12790001	chr2R_12790001	KT6_1-HE
847	chr2R	12819447	12819479	chr2R	12824525	12824557	jockey	17	5077	5.5	10.0	7.8	1.9	5110	chr2R	12819447	intergenic	not near genes	chr2R	12822002	intergenic	not near genes	chr2R	12824557	intergenic	not near genes	chr2R_17_12820001	chr2R_12820001	KT6_1-HE
849	chr2R	13136845	13136868	chr2R	13141644	13141667	Doc	6	4799	2.0	4.5	3.2	1.4	4822	chr2R	13136845	exon	Cap-G +	chr2R	13139256	intron	Cap-G +	chr2R	13141667	intron	Cap-G +	chr2R_6_13135001	chr2R_13135001	KT6_1-HE
885	chr2R	14467293	14467326	chr2R	14476446	14476479	roo	11	9153	2.0	3.0	2.5	3.1	9186	chr2R	14467293	intergenic	not near genes	chr2R	14471886	intergenic	not near genes	chr2R	14476479	5` UTR	CR44462 +	chr2R_11_14470001	chr2R_14470001	KT6_1-HE
887	chr2R	14497388	14497421	chr2R	14498555	14498588	1360	10	1167	2.0	5.0	3.5	2.2	1200	chr2R	14497388	3` UTR	Cpsf160 -	chr2R	14497988	intron	Cpsf160 -	chr2R	14498588	3` UTR	Cpsf160 -	chr2R_10_14495001	chr2R_14495001	KT6_1-HE
898	chr2R	14889210	14889236	chr2R	14897819	14897845	Max-element	10	8609	4.5	1.0	2.8	2.6	8635	chr2R	14889210	intergenic	Cyp6a8 -	chr2R	14893528	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	KT6_1-HE
904	chr2R	15004729	15004760	chr2R	15005059	15005069	jockey	13	328	3.5	4.5	4.0	2.6	340	chr2R	15004729	intergenic	not near genes	chr2R	15004899	intergenic	not near genes	chr2R	15005069	intergenic	not near genes	chr2R_13_15000001	chr2R_15000001	KT6_1-HE
905	chr2R	15015457	15015490	chr2R	15022882	15022915	mdg1	16	7424	2.0	6.0	4.0	3.2	7458	chr2R	15015457	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022915	intron	hbs +	chr2R_16_15015001	chr2R_15015001	KT6_1-HE
907	chr2R	15084982	15085008	chr2R	15092032	15092058	297	12	7050	5.0	9.5	7.2	1.5	7076	chr2R	15084982	intergenic	not near genes	chr2R	15088520	intergenic	not near genes	chr2R	15092058	5` UTR	CR44457 +	chr2R_12_15085001	chr2R_15085001	KT6_1-HE
909	chr2R	15119319	15119344	chr2R	15127801	15127826	Tirant	8	8482	4.0	6.5	5.2	1.3	8507	chr2R	15119319	intron	chn +	chr2R	15123572	intron	chn +	chr2R	15127826	intron	chn +	chr2R_8_15120001	chr2R_15120001	KT6_1-HE
955	chr2R	17176372	17176377	chr2R	17182563	17182568	diver	4	6191	0.0	7.5	3.8	0.8	6196	chr2R	17176372	intergenic	not near genes	chr2R	17179470	intergenic	not near genes	chr2R	17182568	intergenic	not near genes	chr2R_4_17175001	chr2R_17175001	KT6_1-HE
957	chr2R	17236505	17236542	chr2R	17241710	17241741	copia	17	5204	3.5	3.0	3.2	4.0	5236	chr2R	17236505	intron	mbl +	chr2R	17239123	intron	mbl +	chr2R	17241741	intron	mbl +	chr2R_17_17235001	chr2R_17235001	KT6_1-HE
970	chr2R	17782363	17782390	chr2R	17783567	17783594	pogo	6	1204	2.5	1.0	1.8	2.1	1231	chr2R	17782363	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783594	intergenic	mir-31a -	chr2R_6_17780001	chr2R_17780001	KT6_1-HE
971	chr2R	17784023	17784057	chr2R	17784265	17784299	pogo	13	242	2.0	4.5	3.2	3.1	276	chr2R	17784023	intergenic	mir-31a -	chr2R	17784161	intergenic	mir-31a -	chr2R	17784299	intergenic	mir-31a -	chr2R_13_17780001	chr2R_17780001	KT6_1-HE
978	chr2R	18045666	18045704	chr2R	18046019	18046057	jockey	11	353	3.5	3.0	3.2	2.6	391	chr2R	18045666	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046057	intergenic	CG5767 -	chr2R_11_18045001	chr2R_18045001	KT6_1-HE
995	chr2R	18575815	18575831	chr2R	18581983	18582020	3S18	4	6169	3.0	3.0	3.0	1.0	6205	chr2R	18575815	intron	GEFmeso -	chr2R	18578918	intron	GEFmeso -	chr2R	18582020	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	KT6_1-HE
996	chr2R	18590868	18590900	chr2R	18600021	18600053	roo	6	9151	1.0	2.0	1.5	2.4	9185	chr2R	18590868	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	KT6_1-HE
1019	chr2R	19776595	19776628	chr2R	19779919	19779952	jockey	10	3324	2.0	3.0	2.5	2.9	3357	chr2R	19776595	intergenic	not near genes	chr2R	19778274	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_10_19775001	chr2R_19775001	KT6_1-HE
1021	chr2R	19914843	19914878	chr2R	19922256	19922291	mdg1	11	7413	2.0	3.0	2.5	3.1	7448	chr2R	19914843	intergenic	not near genes	chr2R	19918567	intergenic	not near genes	chr2R	19922291	intergenic	not near genes	chr2R_11_19915001	chr2R_19915001	KT6_1-HE
1022	chr2R	19957432	19957444	chr2R	19962635	19962647	copia	4	5202	10.0	4.0	7.0	0.5	5215	chr2R	19957432	intergenic	CG44623 +	chr2R	19960040	intergenic	not near genes	chr2R	19962647	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	KT6_1-HE
1023	chr2R	19957445	19957456	chr2R	19962630	19962653	copia	5	5198	8.5	3.0	5.8	0.7	5208	chr2R	19957445	intergenic	CG44623 +	chr2R	19960049	intergenic	not near genes	chr2R	19962653	intergenic	not near genes	chr2R_5_19960001	chr2R_19960001	KT6_1-HE
1040	chr2R	20739440	20739477	chr2R	20744209	20744246	F-element	23	4769	9.0	7.5	8.2	2.5	4806	chr2R	20739440	intron	dpr +	chr2R	20741843	intron	dpr +	chr2R	20744246	intron	dpr +	chr2R_23_20740001	chr2R_20740001	KT6_1-HE
1041	chr2R	20783313	20783332	chr2R	20788086	20788105	F-element	5	4773	1.5	3.5	2.5	1.4	4792	chr2R	20783313	intergenic	not near genes	chr2R	20785709	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_5_20785001	chr2R_20785001	KT6_1-HE
1061	chr2R	21738274	21738310	chr2R	21747435	21747471	roo	16	9158	0.5	5.0	2.8	4.2	9197	chr2R	21738274	intergenic	not near genes	chr2R	21742872	intergenic	not near genes	chr2R	21747471	intergenic	not near genes	chr2R_16_21740001	chr2R_21740001	KT6_1-HE
1062	chr2R	21753084	21753117	chr2R	21753570	21753603	roo	19	486	8.0	5.0	6.5	2.5	519	chr2R	21753084	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753603	intergenic	not near genes	chr2R_19_21750001	chr2R_21750001	KT6_1-HE
1064	chr2R	21809525	21809558	chr2R	21817766	21817799	roo	7	8240	2.5	1.5	2.0	2.3	8274	chr2R	21809525	intergenic	not near genes	chr2R	21813662	intergenic	not near genes	chr2R	21817799	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	KT6_1-HE
1077	chr2R	22349692	22349699	chr2R	22351477	22351483	jockey	5	1785	11.0	11.0	11.0	0.4	1791	chr2R	22349692	intron	Liprin-gamma -	chr2R	22350588	intron	Liprin-gamma -	chr2R	22351483	intron	Liprin-gamma -	chr2R_5_22350001	chr2R_22350001	KT6_1-HE
1078	chr2R	22349701	22349725	chr2R	22351474	22351510	jockey	18	1783	4.5	9.0	6.8	2.3	1809	chr2R	22349701	intron	Liprin-gamma -	chr2R	22350606	intron	Liprin-gamma -	chr2R	22351510	intron	Liprin-gamma -	chr2R_18_22350001	chr2R_22350001	KT6_1-HE
1079	chr2R	22360382	22360397	chr2R	22360816	22360831	jockey	6	433	9.0	2.0	5.5	0.9	449	chr2R	22360382	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360831	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	KT6_1-HE
1084	chr2R	22525749	22525775	chr2R	22529305	22529308	jockey	9	3553	4.5	3.0	3.8	1.9	3559	chr2R	22525749	intron	px -	chr2R	22527528	intron	px -	chr2R	22529308	intron	px -	chr2R_9_22525001	chr2R_22525001	KT6_1-HE
1088	chr2R	22843029	22843053	chr2R	22844986	22845016	flea	8	1962	2.5	3.5	3.0	2.0	1987	chr2R	22843029	intergenic	CG9826 +	chr2R	22844022	intergenic	not near genes	chr2R	22845016	intergenic	not near genes	chr2R_8_22840001	chr2R_22840001	KT6_1-HE
1108	chr2R	23914309	23914324	chr2R	23921934	23921949	412	4	7625	1.0	4.0	2.5	1.1	7640	chr2R	23914309	exon	kcc +	chr2R	23918129	intron	kcc +	chr2R	23921949	intron	kcc +	chr2R_4_23915001	chr2R_23915001	KT6_1-HE
1111	chr2R	24147067	24147078	chr2R	24154646	24154657	412	4	7579	5.5	4.5	5.0	0.7	7590	chr2R	24147067	intron	Dat +	chr2R	24150862	intron	Dat +	chr2R	24154657	intron	Dat +	chr2R_4_24150001	chr2R_24150001	KT6_1-HE
1114	chr2R	24727897	24727918	chr2R	24735390	24735420	mdg1	4	7503	3.5	1.0	2.2	1.2	7523	chr2R	24727897	intron	Mid1 -	chr2R	24731658	intron	Mid1 -	chr2R	24735420	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	KT6_1-HE
1124	chr2R	25141649	25141684	chr2R	25159340	25159375	roo	7	17691	3.0	9.0	6.0	1.0	17726	chr2R	25141649	intergenic	not near genes	chr2R	25150512	intergenic	not near genes	chr2R	25159375	intergenic	not near genes	chr2R_7_25150001	chr2R_25150001	KT6_1-HE
1128	chr3L	110214	110238	chr3L	119382	119406	roo	4	9168	3.5	3.0	3.2	1.0	9192	chr3L	110214	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119406	intergenic	not near genes	chr3L_4_110001	chr3L_110001	KT6_1-HE
1130	chr3L	163915	163931	chr3L	164312	164328	INE-1	4	397	3.5	2.0	2.8	1.1	413	chr3L	163915	intron	p130CAS +	chr3L	164122	intron	p130CAS +	chr3L	164328	intron	p130CAS +	chr3L_4_160001	chr3L_160001	KT6_1-HE
1135	chr3L	402688	402716	chr3L	409742	409770	297	14	7054	8.0	9.0	8.5	1.5	7082	chr3L	402688	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409770	intergenic	not near genes	chr3L_14_405001	chr3L_405001	KT6_1-HE
1146	chr3L	789929	789946	chr3L	790415	790432	roo	13	486	5.5	9.0	7.2	1.6	503	chr3L	789929	intergenic	not near genes	chr3L	790180	intergenic	not near genes	chr3L	790432	intergenic	not near genes	chr3L_13_790001	chr3L_790001	KT6_1-HE
1149	chr3L	858003	858031	chr3L	866485	866513	Tirant	9	8480	3.5	5.5	4.5	1.6	8510	chr3L	858003	intergenic	not near genes	chr3L	862258	intergenic	not near genes	chr3L	866513	5` UTR	CG12502 +	chr3L_9_860001	chr3L_860001	KT6_1-HE
1150	chr3L	925173	925209	chr3L	932600	932636	mdg1	12	7427	3.0	4.5	3.8	2.5	7463	chr3L	925173	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_12_925001	chr3L_925001	KT6_1-HE
1152	chr3L	939776	939800	chr3L	940898	940922	jockey	16	1122	10.0	11.5	10.8	1.4	1146	chr3L	939776	intron	Glut1 +	chr3L	940349	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_16_940001	chr3L_940001	KT6_1-HE
1155	chr3L	1154140	1154161	chr3L	1163291	1163312	roo	7	9150	4.0	3.5	3.8	1.5	9172	chr3L	1154140	intron	bab2 -	chr3L	1158726	intron	bab2 -	chr3L	1163312	intron	bab2 -	chr3L_7_1155001	chr3L_1155001	KT6_1-HE
1157	chr3L	1219593	1219624	chr3L	1227327	1227358	412	11	7734	3.0	3.0	3.0	2.8	7765	chr3L	1219593	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227358	intron	mwh +	chr3L_11_1220001	chr3L_1220001	KT6_1-HE
1163	chr3L	1424761	1424772	chr3L	1430014	1430025	Rt1a	8	5253	3.5	5.5	4.5	1.5	5264	chr3L	1424761	intron	Ptp61F -	chr3L	1427393	intron	Ptp61F -	chr3L	1430025	intron	Ptp61F -	chr3L_8_1425001	chr3L_1425001	KT6_1-HE
1166	chr3L	1505998	1506032	chr3L	1513596	1513630	17.6	9	7598	3.5	3.5	3.5	2.0	7632	chr3L	1505998	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513630	intron,intron	Psa +,cue -	chr3L_9_1505001	chr3L_1505001	KT6_1-HE
1175	chr3L	2108252	2108283	chr3L	2113457	2113488	copia	8	5205	3.0	3.0	3.0	2.0	5236	chr3L	2108252	intron	sls -	chr3L	2110870	intron	sls -	chr3L	2113488	intron	sls -	chr3L_8_2110001	chr3L_2110001	KT6_1-HE
1188	chr3L	2447511	2447535	chr3L	2456668	2456692	roo	5	9157	1.0	7.0	4.0	1.0	9181	chr3L	2447511	intron	CG45186 +	chr3L	2452102	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	KT6_1-HE
1202	chr3L	2751454	2751465	chr3L	2755750	2755761	F-element	5	4296	4.5	5.0	4.8	0.9	4307	chr3L	2751454	intron	Mrtf -	chr3L	2753608	intron	Mrtf -	chr3L	2755761	intron	Mrtf -	chr3L_5_2750001	chr3L_2750001	KT6_1-HE
1208	chr3L	2927836	2927872	chr3L	2936114	2936149	Tirant	17	8275	2.5	5.0	3.8	3.5	8313	chr3L	2927836	intron	Shab +	chr3L	2931992	intron	Shab +	chr3L	2936149	intron	Shab +	chr3L_17_2930001	chr3L_2930001	KT6_1-HE
1210	chr3L	3061297	3061317	chr3L	3069869	3069901	Tirant	6	8582	1.0	3.0	2.0	2.0	8604	chr3L	3061297	intron	CG32486 -	chr3L	3065599	intron	CG32486 -	chr3L	3069901	intron	CG32486 -	chr3L_6_3065001	chr3L_3065001	KT6_1-HE
1211	chr3L	3281436	3281475	chr3L	3281932	3281972	Doc	7	497	2.0	2.5	2.2	2.2	536	chr3L	3281436	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281972	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	KT6_1-HE
1213	chr3L	3475075	3475113	chr3L	3475520	3475558	jockey	10	443	2.5	6.5	4.5	1.8	483	chr3L	3475075	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475558	intron	CG42324 +	chr3L_10_3475001	chr3L_3475001	KT6_1-HE
1218	chr3L	3601296	3601332	chr3L	3606608	3606629	copia	9	5310	3.0	2.0	2.5	2.6	5333	chr3L	3601296	intron	Eip63E +	chr3L	3603962	intron	Eip63E +	chr3L	3606629	intron	Eip63E +	chr3L_9_3600001	chr3L_3600001	KT6_1-HE
1229	chr3L	3833741	3833746	chr3L	3833982	3833988	pogo	8	242	14.0	3.0	8.5	0.8	247	chr3L	3833741	intron	enc +	chr3L	3833864	intron	enc +	chr3L	3833988	intron	enc +	chr3L_8_3830001	chr3L_3830001	KT6_1-HE
1230	chr3L	3833749	3833769	chr3L	3833978	3834011	pogo	8	240	4.5	2.5	3.5	1.8	262	chr3L	3833749	intron	enc +	chr3L	3833880	intron	enc +	chr3L	3834011	intron	enc +	chr3L_8_3830001	chr3L_3830001	KT6_1-HE
1240	chr3L	4328758	4328765	chr3L	4336256	4336263	412	4	7497	5.0	8.5	6.8	0.5	7505	chr3L	4328758	intron	Cip4 -	chr3L	4332510	intron	Cip4 -	chr3L	4336263	intron	Cip4 -	chr3L_4_4330001	chr3L_4330001	KT6_1-HE
1258	chr3L	4901127	4901157	chr3L	4907318	4907348	diver	6	6191	6.5	2.0	4.2	1.2	6221	chr3L	4901127	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907348	intergenic	not near genes	chr3L_6_4900001	chr3L_4900001	KT6_1-HE
1263	chr3L	5034155	5034192	chr3L	5043308	5043345	roo	9	9153	5.5	0.5	3.0	2.2	9190	chr3L	5034155	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043345	intron	Con -	chr3L_9_5035001	chr3L_5035001	KT6_1-HE
1264	chr3L	5045454	5045486	chr3L	5050236	5050268	Doc	18	4782	7.5	5.5	6.5	2.4	4814	chr3L	5045454	intron	Con -	chr3L	5047861	intron	Con -	chr3L	5050268	intron	Con -	chr3L_18_5045001	chr3L_5045001	KT6_1-HE
1278	chr3L	5299155	5299178	chr3L	5306592	5306615	Quasimodo	7	7437	4.0	2.5	3.2	1.7	7460	chr3L	5299155	intergenic	not near genes	chr3L	5302885	intergenic	not near genes	chr3L	5306615	intergenic	not near genes	chr3L_7_5300001	chr3L_5300001	KT6_1-HE
1284	chr3L	5537724	5537758	chr3L	5538067	5538079	jockey	10	341	0.5	6.5	3.5	2.2	355	chr3L	5537724	intergenic	not near genes	chr3L	5537902	intergenic	not near genes	chr3L	5538079	intergenic	CG10625 -	chr3L_10_5535001	chr3L_5535001	KT6_1-HE
1290	chr3L	5926315	5926340	chr3L	5926506	5926530	BS	13	189	7.0	3.0	5.0	2.2	215	chr3L	5926315	intron	Vap-33B +	chr3L	5926422	intron	Vap-33B +	chr3L	5926530	intron	Vap-33B +	chr3L_13_5925001	chr3L_5925001	KT6_1-HE
1292	chr3L	6001678	6001711	chr3L	6004379	6004412	jockey	12	2701	3.5	3.5	3.5	2.7	2734	chr3L	6001678	intron	PVRAP +	chr3L	6003045	intron	PVRAP +	chr3L	6004412	intron	PVRAP +	chr3L_12_6000001	chr3L_6000001	KT6_1-HE
1300	chr3L	6220915	6220946	chr3L	6230068	6230099	roo	10	9153	3.0	1.5	2.2	3.1	9184	chr3L	6220915	5` UTR	pncr008:3L +	chr3L	6225507	intergenic	not near genes	chr3L	6230099	intergenic	not near genes	chr3L_10_6225001	chr3L_6225001	KT6_1-HE
1301	chr3L	6335008	6335043	chr3L	6335480	6335515	297	15	472	5.5	5.0	5.2	2.4	507	chr3L	6335008	intron	CG13300 -	chr3L	6335262	intron	CG13300 -	chr3L	6335515	intron	CG13300 -	chr3L_15_6335001	chr3L_6335001	KT6_1-HE
1312	chr3L	6781123	6781142	chr3L	6783137	6783156	Doc	10	2014	5.5	0.0	2.8	2.6	2033	chr3L	6781123	intergenic	not near genes	chr3L	6782140	intergenic	not near genes	chr3L	6783156	intergenic	not near genes	chr3L_10_6780001	chr3L_6780001	KT6_1-HE
1315	chr3L	6855931	6855952	chr3L	6860717	6860738	Doc	9	4785	6.5	10.5	8.5	0.9	4807	chr3L	6855931	intergenic	not near genes	chr3L	6858334	intergenic	not near genes	chr3L	6860738	intergenic	not near genes	chr3L_9_6855001	chr3L_6855001	KT6_1-HE
1316	chr3L	6887514	6887548	chr3L	6895007	6895041	roo	9	7493	6.0	1.0	3.5	2.0	7527	chr3L	6887514	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895041	intergenic	not near genes	chr3L_9_6890001	chr3L_6890001	KT6_1-HE
1321	chr3L	6994884	6994912	chr3L	6995496	6995524	BS	8	612	1.0	3.0	2.0	2.7	640	chr3L	6994884	intergenic	bin +	chr3L	6995204	intergenic	not near genes	chr3L	6995524	intergenic	not near genes	chr3L_8_6995001	chr3L_6995001	KT6_1-HE
1328	chr3L	7129953	7129980	chr3L	7130146	7130173	BS	7	193	3.0	3.0	3.0	1.8	220	chr3L	7129953	intergenic	CG15829 +	chr3L	7130063	intergenic	CG15829 +	chr3L	7130173	intergenic	CG15829 +	chr3L_7_7130001	chr3L_7130001	KT6_1-HE
1342	chr3L	7377313	7377342	chr3L	7380419	7380448	297	6	3106	1.5	3.0	2.2	1.9	3135	chr3L	7377313	intron	SMSr -	chr3L	7378880	intron	SMSr -	chr3L	7380448	intron	SMSr -	chr3L_6_7375001	chr3L_7375001	KT6_1-HE
1347	chr3L	7498756	7498782	chr3L	7503534	7503560	F-element	10	4778	2.5	4.0	3.2	2.4	4804	chr3L	7498756	5` UTR	CG8539 -	chr3L	7501158	intergenic	not near genes	chr3L	7503560	intergenic	not near genes	chr3L_10_7500001	chr3L_7500001	KT6_1-HE
1356	chr3L	7793710	7793744	chr3L	7800763	7800797	297	15	7053	6.5	4.5	5.5	2.3	7087	chr3L	7793710	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800797	intron	CG32369 -	chr3L_15_7795001	chr3L_7795001	KT6_1-HE
1362	chr3L	7886512	7886545	chr3L	7889031	7889064	Stalker4	12	2518	1.5	2.0	1.8	4.3	2552	chr3L	7886512	intron	CG32365 +	chr3L	7887788	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_12_7885001	chr3L_7885001	KT6_1-HE
1363	chr3L	7916829	7916861	chr3L	7926001	7926033	roo	12	9172	4.0	4.0	4.0	2.4	9204	chr3L	7916829	3` UTR	syd -	chr3L	7921431	intron	syd -	chr3L	7926033	3` UTR	syd -	chr3L_12_7920001	chr3L_7920001	KT6_1-HE
1366	chr3L	7985361	7985387	chr3L	7987690	7987716	NOF	6	2329	5.5	3.5	4.5	1.1	2355	chr3L	7985361	intron	nmo +	chr3L	7986538	intron	nmo +	chr3L	7987716	intron	nmo +	chr3L_6_7985001	chr3L_7985001	KT6_1-HE
1371	chr3L	8019729	8019737	chr3L	8024146	8024154	NOF	4	4417	0.5	7.0	3.8	0.8	4425	chr3L	8019729	intron	nmo +	chr3L	8021942	intron	nmo +	chr3L	8024154	intron	nmo +	chr3L_4_8020001	chr3L_8020001	KT6_1-HE
1384	chr3L	8498294	8498317	chr3L	8505762	8505785	blood	6	7468	0.0	1.0	0.5	4.0	7491	chr3L	8498294	intron	CG43163 -	chr3L	8502040	intron	CG43163 -	chr3L	8505785	intron	CG43163 -	chr3L_6_8500001	chr3L_8500001	KT6_1-HE
1388	chr3L	8791271	8791294	chr3L	8796696	8796719	I-element	7	5425	6.0	0.0	3.0	1.8	5448	chr3L	8791271	exon	Fhos +	chr3L	8793995	intron	Fhos +	chr3L	8796719	intron	Fhos +	chr3L_7_8790001	chr3L_8790001	KT6_1-HE
1398	chr3L	9076924	9076960	chr3L	9084485	9084521	412	20	7561	4.5	3.5	4.0	4.0	7597	chr3L	9076924	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084521	exon	Tequila +	chr3L_20_9080001	chr3L_9080001	KT6_1-HE
1400	chr3L	9130559	9130581	chr3L	9134321	9134343	412	7	3762	8.5	6.5	7.5	0.8	3784	chr3L	9130559	intergenic	bol -	chr3L	9132451	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_7_9130001	chr3L_9130001	KT6_1-HE
1401	chr3L	9164694	9164724	chr3L	9166162	9166192	hobo	14	1468	9.5	5.0	7.2	1.7	1498	chr3L	9164694	intron	Rdl -	chr3L	9165443	intron	Rdl -	chr3L	9166192	intron	Rdl -	chr3L_14_9165001	chr3L_9165001	KT6_1-HE
1402	chr3L	9219245	9219275	chr3L	9219918	9219948	jockey	15	672	9.5	11.0	10.2	1.3	703	chr3L	9219245	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219948	intergenic	not near genes	chr3L_15_9215001	chr3L_9215001	KT6_1-HE
1404	chr3L	9270631	9270649	chr3L	9278383	9278401	roo	8	7752	6.0	3.5	4.8	1.4	7770	chr3L	9270631	intron	GluRIB +	chr3L	9274516	intron	GluRIB +	chr3L	9278401	exon	GluRIB +	chr3L_8_9270001	chr3L_9270001	KT6_1-HE
1408	chr3L	9443508	9443541	chr3L	9445300	9445333	S-element	6	1792	1.0	2.0	1.5	2.4	1825	chr3L	9443508	intron	CG33926 +	chr3L	9444420	intron	CG33926 +	chr3L	9445333	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	KT6_1-HE
1409	chr3L	9501706	9501729	chr3L	9502193	9502216	roo	6	487	1.5	4.0	2.8	1.6	510	chr3L	9501706	intron	path -	chr3L	9501961	intron	path -	chr3L	9502216	intron	path -	chr3L_6_9500001	chr3L_9500001	KT6_1-HE
1410	chr3L	9571901	9571936	chr3L	9572250	9572285	jockey	18	349	4.0	5.0	4.5	3.3	384	chr3L	9571901	intron	CG42673 +	chr3L	9572093	intron	CG42673 +	chr3L	9572285	intron	CG42673 +	chr3L_18_9570001	chr3L_9570001	KT6_1-HE
1411	chr3L	9575907	9575944	chr3L	9580986	9581023	jockey	16	5076	8.5	6.0	7.2	2.0	5116	chr3L	9575907	intron	CG42673 +	chr3L	9578465	intron	CG42673 +	chr3L	9581023	intron	CG42673 +	chr3L_16_9575001	chr3L_9575001	KT6_1-HE
1419	chr3L	9929669	9929701	chr3L	9938449	9938450	roo	14	8778	9.5	7.0	8.2	1.5	8781	chr3L	9929669	intron	CG34356 +	chr3L	9934060	intron	CG34356 +	chr3L	9938450	intron	CG34356 +	chr3L_14_9930001	chr3L_9930001	KT6_1-HE
1425	chr3L	10060109	10060116	chr3L	10067689	10067696	17.6	4	7580	12.5	4.0	8.2	0.4	7587	chr3L	10060109	intron	dpr6 +	chr3L	10063902	intron	dpr6 +	chr3L	10067696	intron	dpr6 +	chr3L_4_10060001	chr3L_10060001	KT6_1-HE
1443	chr3L	10414938	10414978	chr3L	10417311	10417351	Doc	38	2372	0.0	6.5	3.2	9.0	2413	chr3L	10414938	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417351	intergenic	not near genes	chr3L_38_10415001	chr3L_10415001	KT6_1-HE
1466	chr3L	11087061	11087090	chr3L	11088850	11088880	S-element	6	1790	2.5	2.5	2.5	1.7	1819	chr3L	11087061	intron	JIL-1 -	chr3L	11087970	intron	JIL-1 -	chr3L	11088880	intron	JIL-1 -	chr3L_6_11085001	chr3L_11085001	KT6_1-HE
1467	chr3L	11103240	11103269	chr3L	11108555	11108584	X-element	4	5310	3.0	1.5	2.2	1.2	5344	chr3L	11103240	intergenic	CG32071 -,Elo68alpha -	chr3L	11105912	intergenic	not near genes	chr3L	11108584	exon	CG12522 +	chr3L_4_11105001	chr3L_11105001	KT6_1-HE
1471	chr3L	11277464	11277484	chr3L	11278458	11278480	Rt1a	4	996	0.5	3.5	2.0	1.3	1016	chr3L	11277464	intergenic	not near genes	chr3L	11277972	intergenic	not near genes	chr3L	11278480	intergenic	not near genes	chr3L_4_11275001	chr3L_11275001	KT6_1-HE
1475	chr3L	11329696	11329726	chr3L	11332895	11332932	jockey	8	3204	2.5	1.0	1.8	2.9	3236	chr3L	11329696	intergenic	not near genes	chr3L	11331314	intergenic	not near genes	chr3L	11332932	intergenic	not near genes	chr3L_8_11330001	chr3L_11330001	KT6_1-HE
1489	chr3L	11723085	11723116	chr3L	11727881	11727912	Doc	8	4796	3.0	5.0	4.0	1.6	4827	chr3L	11723085	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727912	3` UTR	Bmcp +	chr3L_8_11725001	chr3L_11725001	KT6_1-HE
1528	chr3L	12874922	12874963	chr3L	12877215	12877256	jockey	12	2293	2.0	4.0	3.0	3.0	2334	chr3L	12874922	intergenic	not near genes	chr3L	12876089	intergenic	not near genes	chr3L	12877256	intergenic	not near genes	chr3L_12_12875001	chr3L_12875001	KT6_1-HE
1532	chr3L	12919282	12919303	chr3L	12924746	12924777	Rt1c	15	5472	1.5	2.5	2.0	5.0	5495	chr3L	12919282	intergenic	not near genes	chr3L	12922030	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_15_12920001	chr3L_12920001	KT6_1-HE
1534	chr3L	12957785	12957820	chr3L	12962268	12962303	copia	15	4483	3.0	6.0	4.5	2.7	4518	chr3L	12957785	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962303	intergenic	not near genes	chr3L_15_12960001	chr3L_12960001	KT6_1-HE
1558	chr3L	13525155	13525185	chr3L	13532952	13532974	roo	15	7794	3.5	5.0	4.2	2.9	7819	chr3L	13525155	intergenic	not near genes	chr3L	13529064	intergenic	not near genes	chr3L	13532974	intergenic	not near genes	chr3L_15_13525001	chr3L_13525001	KT6_1-HE
1565	chr3L	13804542	13804575	chr3L	13822829	13822862	roo	30	18286	10.5	10.0	10.2	2.7	18320	chr3L	13804542	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822862	intergenic	not near genes	chr3L_30_13810001	chr3L_13810001	KT6_1-HE
1578	chr3L	14245572	14245586	chr3L	14245663	14245681	1360	9	94	10.0	3.5	6.8	1.2	109	chr3L	14245572	3` UTR	CR44561 -	chr3L	14245626	3` UTR	CR44561 -	chr3L	14245681	3` UTR	CR44561 -	chr3L_9_14245001	chr3L_14245001	KT6_1-HE
1579	chr3L	14245588	14245592	chr3L	14245662	14245687	1360	9	91	7.5	3.5	5.5	1.4	99	chr3L	14245588	3` UTR	CR44561 -	chr3L	14245638	3` UTR	CR44561 -	chr3L	14245687	3` UTR	CR44561 -	chr3L_9_14245001	chr3L_14245001	KT6_1-HE
1580	chr3L	14267367	14267393	chr3L	14271808	14271834	F-element	11	4441	4.0	6.0	5.0	1.8	4467	chr3L	14267367	intergenic	not near genes	chr3L	14269600	intergenic	not near genes	chr3L	14271834	intergenic	not near genes	chr3L_11_14265001	chr3L_14265001	KT6_1-HE
1581	chr3L	14295981	14296016	chr3L	14296468	14296503	roo	24	487	6.0	7.0	6.5	3.2	522	chr3L	14295981	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296503	intron	fz +	chr3L_24_14295001	chr3L_14295001	KT6_1-HE
1582	chr3L	14312041	14312056	chr3L	14316856	14316871	X-element	6	4813	3.5	7.5	5.5	0.9	4830	chr3L	14312041	exon	fz +	chr3L	14314456	intron	fz +	chr3L	14316871	intron	fz +	chr3L_6_14310001	chr3L_14310001	KT6_1-HE
1590	chr3L	14468445	14468475	chr3L	14473652	14473682	copia	16	5207	8.0	5.5	6.8	2.1	5237	chr3L	14468445	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473682	intron	bbg -	chr3L_16_14470001	chr3L_14470001	KT6_1-HE
1592	chr3L	14524319	14524338	chr3L	14529080	14529101	F-element	7	4761	4.0	2.5	3.2	1.7	4782	chr3L	14524319	intron	bbg -	chr3L	14526710	intron	bbg -	chr3L	14529101	intron	bbg -	chr3L_7_14525001	chr3L_14525001	KT6_1-HE
1602	chr3L	14721179	14721201	chr3L	14723022	14723045	Rt1c	6	1844	6.0	3.5	4.8	1.0	1866	chr3L	14721179	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723045	intron	ome +	chr3L_6_14720001	chr3L_14720001	KT6_1-HE
1603	chr3L	14725600	14725628	chr3L	14728595	14728623	Doc	4	2995	2.0	4.5	3.2	1.0	3023	chr3L	14725600	intron	ome +	chr3L	14727112	intron	ome +	chr3L	14728623	intron	ome +	chr3L_4_14725001	chr3L_14725001	KT6_1-HE
1619	chr3L	14954363	14954396	chr3L	14956033	14956066	transib2	14	1670	4.5	5.5	5.0	2.3	1703	chr3L	14954363	intergenic	not near genes	chr3L	14955214	intergenic	not near genes	chr3L	14956066	intergenic	not near genes	chr3L_14_14955001	chr3L_14955001	KT6_1-HE
1629	chr3L	15295765	15295801	chr3L	15298609	15298644	gypsy5	14	2843	7.5	5.5	6.5	1.9	2879	chr3L	15295765	intergenic	not near genes	chr3L	15297204	intergenic	not near genes	chr3L	15298644	intergenic	Best4 +	chr3L_14_15295001	chr3L_15295001	KT6_1-HE
1634	chr3L	15423758	15423784	chr3L	15426603	15426629	opus	20	2845	8.0	3.0	5.5	3.1	2871	chr3L	15423758	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426629	intergenic	not near genes	chr3L_20_15425001	chr3L_15425001	KT6_1-HE
1638	chr3L	15554923	15554952	chr3L	15556707	15556736	S-element	7	1784	2.0	5.0	3.5	1.6	1813	chr3L	15554923	intron	AGO2 +	chr3L	15555830	intron	AGO2 +	chr3L	15556736	intron	AGO2 +	chr3L_7_15555001	chr3L_15555001	KT6_1-HE
1649	chr3L	15929194	15929226	chr3L	15938342	15938374	roo	8	9148	4.5	3.0	3.8	1.7	9180	chr3L	15929194	intron	Pka-C3 -	chr3L	15933784	intron	Pka-C3 -	chr3L	15938374	intron	Pka-C3 -	chr3L_8_15930001	chr3L_15930001	KT6_1-HE
1654	chr3L	16184101	16184140	chr3L	16188921	16188949	X-element	16	4819	5.5	4.5	5.0	2.7	4848	chr3L	16184101	intergenic	not near genes	chr3L	16186525	intergenic	not near genes	chr3L	16188949	intergenic	not near genes	chr3L_16_16185001	chr3L_16185001	KT6_1-HE
1660	chr3L	16443846	16443879	chr3L	16446187	16446220	Doc	24	2341	6.0	8.5	7.2	2.9	2374	chr3L	16443846	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446220	intron,intron	CG33158 +,dsx-c73A -	chr3L_24_16445001	chr3L_16445001	KT6_1-HE
1664	chr3L	16493980	16494012	chr3L	16494498	16494530	jockey	24	517	6.5	10.0	8.2	2.6	550	chr3L	16493980	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494255	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494530	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_24_16490001	chr3L_16490001	KT6_1-HE
1670	chr3L	16616513	16616541	chr3L	16621842	16621859	297	5	5327	1.5	1.0	1.2	2.3	5346	chr3L	16616513	3` UTR	Abl -	chr3L	16619186	3` UTR	Abl -	chr3L	16621859	3` UTR	Abl -	chr3L_5_16615001	chr3L_16615001	KT6_1-HE
1672	chr3L	16684028	16684043	chr3L	16689260	16689275	copia	8	5232	2.5	10.5	6.5	1.1	5247	chr3L	16684028	intron,intron	Lasp -,CG43954 -	chr3L	16686652	intron,intron	Lasp -,CG43954 -	chr3L	16689275	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_8_16685001	chr3L_16685001	KT6_1-HE
1678	chr3L	16945726	16945757	chr3L	16954880	16954911	roo	21	9153	7.0	6.5	6.8	2.7	9185	chr3L	16945726	exon	Obp73a +	chr3L	16950318	intergenic	not near genes	chr3L	16954911	5` UTR	Nc73EF +	chr3L_21_16950001	chr3L_16950001	KT6_1-HE
1681	chr3L	17034938	17034967	chr3L	17035127	17035156	G2	7	189	1.5	3.5	2.5	2.0	218	chr3L	17034938	intergenic	not near genes	chr3L	17035047	intergenic	not near genes	chr3L	17035156	intergenic	not near genes	chr3L_7_17035001	chr3L_17035001	KT6_1-HE
1683	chr3L	17085002	17085036	chr3L	17094152	17094186	roo	19	9150	10.5	11.0	10.8	1.6	9184	chr3L	17085002	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094186	intron	Rbp6 -	chr3L_19_17085001	chr3L_17085001	KT6_1-HE
1694	chr3L	17516994	17517012	chr3L	17524551	17524571	412	11	7559	3.5	6.5	5.0	1.8	7577	chr3L	17516994	intron	CG7564 +	chr3L	17520782	intron	CG7564 +	chr3L	17524571	3` UTR	CG7564 +	chr3L_11_17520001	chr3L_17520001	KT6_1-HE
1699	chr3L	17730850	17730882	chr3L	17738181	17738213	mdg1	14	7331	4.0	3.0	3.5	3.1	7363	chr3L	17730850	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738213	intron	Ccn +	chr3L_14_17730001	chr3L_17730001	KT6_1-HE
1703	chr3L	17799810	17799840	chr3L	17801598	17801620	S-element	6	1785	2.0	0.0	1.0	3.0	1810	chr3L	17799810	intron	NUCB1 -	chr3L	17800715	intron	NUCB1 -	chr3L	17801620	intron	NUCB1 -	chr3L_6_17800001	chr3L_17800001	KT6_1-HE
1707	chr3L	17918379	17918404	chr3L	17921183	17921207	opus	4	2804	6.5	3.0	4.8	0.7	2828	chr3L	17918379	intergenic	not near genes	chr3L	17919793	intergenic	not near genes	chr3L	17921207	intergenic	not near genes	chr3L_4_17915001	chr3L_17915001	KT6_1-HE
1712	chr3L	18047704	18047739	chr3L	18056762	18056797	roo	11	9058	4.5	3.5	4.0	2.2	9093	chr3L	18047704	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056797	intron	Eip75B -	chr3L_11_18050001	chr3L_18050001	KT6_1-HE
1732	chr3L	18506130	18506163	chr3L	18509594	18509627	F-element	23	3464	6.0	5.0	5.5	3.5	3497	chr3L	18506130	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509627	intergenic	not near genes	chr3L_23_18505001	chr3L_18505001	KT6_1-HE
1734	chr3L	18514904	18514934	chr3L	18520096	18520126	BS	26	5191	12.5	12.0	12.2	2.0	5222	chr3L	18514904	intergenic	not near genes	chr3L	18517515	intergenic	not near genes	chr3L	18520126	intergenic	not near genes	chr3L_26_18515001	chr3L_18515001	KT6_1-HE
1735	chr3L	18528624	18528660	chr3L	18537786	18537822	roo	25	9162	7.0	8.0	7.5	2.9	9198	chr3L	18528624	intergenic	not near genes	chr3L	18533223	intergenic	not near genes	chr3L	18537822	intergenic	not near genes	chr3L_25_18530001	chr3L_18530001	KT6_1-HE
1740	chr3L	18593951	18593968	chr3L	18595932	18595949	Doc	10	1981	7.5	0.0	3.8	2.1	1998	chr3L	18593951	intergenic	term -	chr3L	18594950	intergenic	not near genes	chr3L	18595949	intergenic	CR45389 +	chr3L_10_18590001	chr3L_18590001	KT6_1-HE
1749	chr3L	18833777	18833810	chr3L	18834942	18834975	1360	9	1165	1.0	2.0	1.5	3.6	1198	chr3L	18833777	intron	Indy -	chr3L	18834376	intron	Indy -	chr3L	18834975	intron	Indy -	chr3L_9_18830001	chr3L_18830001	KT6_1-HE
1755	chr3L	19008835	19008872	chr3L	19009174	19009211	jockey	10	337	6.0	3.0	4.5	1.8	376	chr3L	19008835	intron	nkd -	chr3L	19009023	intron	nkd -	chr3L	19009211	intron	nkd -	chr3L_10_19005001	chr3L_19005001	KT6_1-HE
1758	chr3L	19117041	19117063	chr3L	19124489	19124511	mdg1	9	7448	5.5	5.0	5.2	1.5	7470	chr3L	19117041	intron	CG14082 -	chr3L	19120776	intron	CG14082 -	chr3L	19124511	intron	CG14082 -	chr3L_9_19120001	chr3L_19120001	KT6_1-HE
1761	chr3L	19208060	19208091	chr3L	19209434	19209466	Doc	18	1375	7.0	5.0	6.0	2.6	1406	chr3L	19208060	intron	fz2 -	chr3L	19208763	intron	fz2 -	chr3L	19209466	intron	fz2 -	chr3L_18_19205001	chr3L_19205001	KT6_1-HE
1767	chr3L	19861824	19861846	chr3L	19863613	19863635	S-element	4	1789	2.0	2.5	2.2	1.2	1811	chr3L	19861824	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863635	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	KT6_1-HE
1773	chr3L	20113658	20113678	chr3L	20122916	20122936	roo	7	9258	3.5	1.5	2.5	2.0	9278	chr3L	20113658	intergenic	not near genes	chr3L	20118297	intergenic	not near genes	chr3L	20122936	intergenic	not near genes	chr3L_7_20115001	chr3L_20115001	KT6_1-HE
1776	chr3L	20257336	20257358	chr3L	20258457	20258479	pogo	8	1121	3.5	7.5	5.5	1.2	1143	chr3L	20257336	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258479	intron	rdgC +	chr3L_8_20255001	chr3L_20255001	KT6_1-HE
1782	chr3L	20590061	20590097	chr3L	20590601	20590637	412	11	538	5.5	7.5	6.5	1.5	576	chr3L	20590061	intergenic	not near genes	chr3L	20590349	intergenic	not near genes	chr3L	20590637	intergenic	not near genes	chr3L_11_20590001	chr3L_20590001	KT6_1-HE
1785	chr3L	20821300	20821310	chr3L	20824912	20824922	NOF	7	3612	2.0	5.0	3.5	1.6	3622	chr3L	20821300	intron	Pka-R1 +	chr3L	20823111	intron	Pka-R1 +	chr3L	20824922	intron	Pka-R1 +	chr3L_7_20820001	chr3L_20820001	KT6_1-HE
1796	chr3L	21014914	21014947	chr3L	21023394	21023429	Tirant	11	8479	3.5	4.0	3.8	2.3	8515	chr3L	21014914	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023429	intron	skd -	chr3L_11_21015001	chr3L_21015001	KT6_1-HE
1798	chr3L	21151861	21151894	chr3L	21156946	21156979	flea	13	5085	6.5	4.0	5.2	2.1	5118	chr3L	21151861	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156979	intron	Ac78C -	chr3L_13_21150001	chr3L_21150001	KT6_1-HE
1799	chr3L	21306152	21306179	chr3L	21315312	21315339	roo	9	9160	2.5	3.0	2.8	2.4	9187	chr3L	21306152	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310746	intron	Pc -	chr3L	21315339	3` UTR	Pc -	chr3L_9_21310001	chr3L_21310001	KT6_1-HE
1802	chr3L	21372723	21372754	chr3L	21379232	21379263	McClintock	9	6509	3.0	4.0	3.5	2.0	6540	chr3L	21372723	intergenic	not near genes	chr3L	21375993	intergenic	not near genes	chr3L	21379263	intergenic	not near genes	chr3L_9_21375001	chr3L_21375001	KT6_1-HE
1808	chr3L	21498834	21498870	chr3L	21500470	21500507	1360	13	1637	2.5	3.0	2.8	3.4	1673	chr3L	21498834	intron	Glg1 -	chr3L	21499670	intron	Glg1 -	chr3L	21500507	intron	Glg1 -	chr3L_13_21495001	chr3L_21495001	KT6_1-HE
1814	chr3L	21749319	21749340	chr3L	21754480	21754498	Doc	11	5161	6.0	3.5	4.8	1.9	5179	chr3L	21749319	intron	Syn1 -	chr3L	21751908	intron	Syn1 -	chr3L	21754498	intron	Syn1 -	chr3L_11_21750001	chr3L_21750001	KT6_1-HE
1822	chr3L	22099673	22099703	chr3L	22105860	22105890	3S18	9	6187	4.0	1.5	2.8	2.4	6217	chr3L	22099673	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_9_22100001	chr3L_22100001	KT6_1-HE
1832	chr3L	22555768	22555797	chr3L	22563239	22563268	blood	25	7469	4.5	2.5	3.5	5.6	7500	chr3L	22555768	intergenic	not near genes	chr3L	22559518	intergenic	not near genes	chr3L	22563268	intergenic	not near genes	chr3L_25_22555001	chr3L_22555001	KT6_1-HE
1833	chr3L	22555798	22555801	chr3L	22563238	22563272	blood	5	7459	4.0	2.5	3.2	1.2	7474	chr3L	22555798	intergenic	not near genes	chr3L	22559535	intergenic	not near genes	chr3L	22563272	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	KT6_1-HE
1834	chr3L	22577619	22577651	chr3L	22582408	22582440	Doc	13	4789	2.0	3.5	2.8	3.4	4821	chr3L	22577619	intergenic	not near genes	chr3L	22580030	intergenic	not near genes	chr3L	22582440	3` UTR	CG14459 -	chr3L_13_22580001	chr3L_22580001	KT6_1-HE
1836	chr3L	22617188	22617222	chr3L	22624641	22624675	blood	6	7453	4.5	3.0	3.8	1.2	7487	chr3L	22617188	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624675	intron	CG14459 -	chr3L_6_22620001	chr3L_22620001	KT6_1-HE
1839	chr3L	22761387	22761418	chr3L	22766822	22766853	Ivk	16	5435	6.5	4.0	5.2	2.6	5466	chr3L	22761387	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_16_22760001	chr3L_22760001	KT6_1-HE
1845	chr3L	22989859	22989893	chr3L	22996834	22996868	297	10	6974	2.5	10.0	6.2	1.4	7009	chr3L	22989859	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996868	intergenic	not near genes	chr3L_10_22990001	chr3L_22990001	KT6_1-HE
1848	chr3L	23973985	23974009	chr3L	23974461	23974485	Dm88	11	476	7.5	3.5	5.5	1.7	500	chr3L	23973985	intron	CG40470 -	chr3L	23974235	intron	CG40470 -	chr3L	23974485	intron	CG40470 -	chr3L_11_23970001	chr3L_23970001	KT6_1-HE
1849	chr3L	24021275	24021309	chr3L	24022433	24022467	1360	9	1158	1.0	3.5	2.2	2.8	1192	chr3L	24021275	intergenic	not near genes	chr3L	24021871	intergenic	not near genes	chr3L	24022467	intergenic	not near genes	chr3L_9_24020001	chr3L_24020001	KT6_1-HE
1851	chr3L	24168788	24168817	chr3L	24176117	24176145	ZAM	10	7327	5.0	7.5	6.2	1.4	7357	chr3L	24168788	intron	Snap25 +	chr3L	24172466	intron	Snap25 +	chr3L	24176145	intron	Snap25 +	chr3L_10_24170001	chr3L_24170001	KT6_1-HE
1858	chr3L	24791897	24791922	chr3L	24796677	24796702	Doc	9	4780	9.5	7.0	8.2	1.0	4805	chr3L	24791897	intergenic	not near genes	chr3L	24794300	intergenic	not near genes	chr3L	24796702	intergenic	not near genes	chr3L_9_24790001	chr3L_24790001	KT6_1-HE
1863	chr3L	25628497	25628527	chr3L	25633269	25633299	F-element	17	4772	7.5	7.0	7.2	2.1	4802	chr3L	25628497	intron	CG41343 -	chr3L	25630898	intron	CG41343 -	chr3L	25633299	intron	CG41343 -	chr3L_17_25630001	chr3L_25630001	KT6_1-HE
1865	chr3L	25824677	25824679	chr3L	27273495	27273497	F-element	4	1448818	50.0	16.5	33.2	0.1	1448820	chr3L	25824677	intron	CG40178 -	chr3L	26549087	intergenic	not near genes	chr3L	27273497	intergenic	not near genes	chr3L_4_26545001	chr3L_26545001	KT6_1-HE
1873	chr3L	27980696	27980722	chr3L	27985492	27985518	Doc	21	4796	8.0	4.5	6.2	2.9	4822	chr3L	27980696	intron	CG17514 -	chr3L	27983107	intron	CG17514 -	chr3L	27985518	intron	CG17514 -	chr3L_21_27980001	chr3L_27980001	KT6_1-HE
1884	chr3R	1446702	1446702	chr3R	2999380	2999380	invader2	4	1552678	8.0	5.5	6.8	0.5	1552678	chr3R	1446702	intron	CG40155 +	chr3R	2223041	intergenic	not near genes	chr3R	2999380	intron	CG42618 -	chr3R_4_2220001	chr3R_2220001	KT6_1-HE
1890	chr3R	4206071	4206103	chr3R	4211647	4211679	mdg3	10	5576	2.5	0.0	1.2	4.5	5608	chr3R	4206071	intron	CG14636 -	chr3R	4208875	intron	CG14636 -	chr3R	4211679	intron	CG14636 -	chr3R_10_4205001	chr3R_4205001	KT6_1-HE
1892	chr3R	4366772	4366788	chr3R	4375139	4375172	roo	4	8380	5.0	1.5	3.2	1.0	8400	chr3R	4366772	3` UTR	CG1090 +	chr3R	4370972	intergenic	not near genes	chr3R	4375172	5` UTR	CR44922 +	chr3R_4_4370001	chr3R_4370001	KT6_1-HE
1893	chr3R	4538900	4538911	chr3R	4540161	4540172	1360	7	1261	0.0	5.0	2.5	2.0	1272	chr3R	4538900	intron	CG34357 -	chr3R	4539536	intron	CG34357 -	chr3R	4540172	intron	CG34357 -	chr3R_7_4535001	chr3R_4535001	KT6_1-HE
1895	chr3R	4609545	4609582	chr3R	4610710	4610747	1360	27	1165	9.5	10.0	9.8	2.5	1202	chr3R	4609545	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610747	intergenic	not near genes	chr3R_27_4610001	chr3R_4610001	KT6_1-HE
1897	chr3R	4683176	4683206	chr3R	4684936	4684966	S-element	19	1760	8.0	3.5	5.8	2.8	1790	chr3R	4683176	intron	CG43427 +	chr3R	4684071	intron	CG43427 +	chr3R	4684966	intron	CG43427 +	chr3R_19_4680001	chr3R_4680001	KT6_1-HE
1898	chr3R	4753240	4753271	chr3R	4757544	4757561	F-element	10	4303	7.5	4.0	5.8	1.5	4321	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755400	intron,intron	atms +,CG44098 -	chr3R	4757561	intron,exon	atms +,CG44098 -	chr3R_10_4755001	chr3R_4755001	KT6_1-HE
1900	chr3R	4887484	4887509	chr3R	4894861	4894887	rover	9	7376	2.0	6.0	4.0	1.8	7403	chr3R	4887484	intergenic	not near genes	chr3R	4891186	intergenic	not near genes	chr3R	4894887	intergenic	not near genes	chr3R_9_4890001	chr3R_4890001	KT6_1-HE
1905	chr3R	5045850	5045859	chr3R	5052952	5052962	HMS-Beagle	5	7103	6.0	1.5	3.8	1.0	7112	chr3R	5045850	intron	CR43635 -	chr3R	5049406	intergenic	not near genes	chr3R	5052962	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	KT6_1-HE
1906	chr3R	5067987	5068008	chr3R	5073505	5073526	mdg3	14	5518	3.5	6.0	4.8	2.4	5539	chr3R	5067987	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073526	intergenic	not near genes	chr3R_14_5070001	chr3R_5070001	KT6_1-HE
1909	chr3R	5338397	5338426	chr3R	5343575	5343604	Rt1c	19	5177	6.0	9.5	7.8	2.2	5207	chr3R	5338397	intron	mtd -	chr3R	5341000	intron	mtd -	chr3R	5343604	intron	mtd -	chr3R_19_5340001	chr3R_5340001	KT6_1-HE
1911	chr3R	5445963	5445977	chr3R	5452424	5452438	Burdock	4	6461	3.5	1.5	2.5	1.1	6475	chr3R	5445963	intron	CG14669 +	chr3R	5449200	intron	CG14669 +	chr3R	5452438	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	KT6_1-HE
1914	chr3R	5747009	5747040	chr3R	5753201	5753232	diver	5	6192	1.0	1.0	1.0	2.5	6223	chr3R	5747009	intergenic	Madm +	chr3R	5750120	intergenic	not near genes	chr3R	5753232	intergenic	CG2091 -	chr3R_5_5750001	chr3R_5750001	KT6_1-HE
1916	chr3R	5809111	5809140	chr3R	5809353	5809382	pogo	7	241	3.5	2.5	3.0	1.8	271	chr3R	5809111	3` UTR	CG11000 +	chr3R	5809246	3` UTR	CG11000 +	chr3R	5809382	3` UTR	CG11000 +	chr3R_7_5805001	chr3R_5805001	KT6_1-HE
1917	chr3R	5822376	5822399	chr3R	5823544	5823567	1360	12	1168	3.0	1.5	2.2	3.8	1191	chr3R	5822376	3` UTR	CG2023 -	chr3R	5822972	3` UTR	CG2023 -	chr3R	5823567	3` UTR	CG2023 -	chr3R_12_5820001	chr3R_5820001	KT6_1-HE
1918	chr3R	5927564	5927589	chr3R	5927805	5927830	pogo	6	241	6.0	5.5	5.8	0.9	266	chr3R	5927564	intron	CG34113 -	chr3R	5927697	intron	CG34113 -	chr3R	5927830	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	KT6_1-HE
1923	chr3R	6015962	6015991	chr3R	6024444	6024473	Tirant	15	8482	3.0	1.0	2.0	5.0	8511	chr3R	6015962	intergenic	not near genes	chr3R	6020218	intergenic	not near genes	chr3R	6024473	intergenic	not near genes	chr3R_15_6020001	chr3R_6020001	KT6_1-HE
1927	chr3R	6121164	6121179	chr3R	6121383	6121398	BS	4	219	0.0	5.0	2.5	1.1	234	chr3R	6121164	intergenic	not near genes	chr3R	6121281	intergenic	not near genes	chr3R	6121398	intergenic	not near genes	chr3R_4_6120001	chr3R_6120001	KT6_1-HE
1928	chr3R	6158507	6158538	chr3R	6167091	6167122	Tirant	6	8584	8.5	2.5	5.5	0.9	8615	chr3R	6158507	intergenic	not near genes	chr3R	6162814	intergenic	not near genes	chr3R	6167122	intergenic	CG1077 +	chr3R_6_6160001	chr3R_6160001	KT6_1-HE
1930	chr3R	6175170	6175206	chr3R	6182443	6182469	HMS-Beagle2	8	7272	4.0	3.5	3.8	1.7	7299	chr3R	6175170	intergenic	Osi1 +	chr3R	6178820	intron	CR45194 +	chr3R	6182469	intergenic	CR45194 +	chr3R_8_6175001	chr3R_6175001	KT6_1-HE
1937	chr3R	6510021	6510055	chr3R	6515103	6515137	jockey	16	5081	4.0	6.5	5.2	2.6	5116	chr3R	6510021	intergenic	not near genes	chr3R	6512579	intergenic	not near genes	chr3R	6515137	intergenic	not near genes	chr3R_16_6510001	chr3R_6510001	KT6_1-HE
1940	chr3R	6737505	6737532	chr3R	6739293	6739312	Doc	15	1786	4.0	9.5	6.8	1.9	1807	chr3R	6737505	intron	pb -	chr3R	6738408	intron	pb -	chr3R	6739312	intron	pb -	chr3R_15_6735001	chr3R_6735001	KT6_1-HE
1968	chr3R	7694575	7694606	chr3R	7713637	7713668	invader3	15	19062	2.0	3.0	2.5	4.3	19093	chr3R	7694575	3` UTR	Nlg1 +	chr3R	7704122	intergenic	not near genes	chr3R	7713668	intergenic	not near genes	chr3R_15_7700001	chr3R_7700001	KT6_1-HE
1969	chr3R	7729463	7729499	chr3R	7737402	7737438	Stalker2	28	7939	6.0	10.0	8.0	3.1	7975	chr3R	7729463	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737438	intergenic	not near genes	chr3R_28_7730001	chr3R_7730001	KT6_1-HE
1973	chr3R	7849651	7849669	chr3R	7850819	7850837	1360	6	1168	1.0	5.0	3.0	1.5	1186	chr3R	7849651	intron	CG34384 +	chr3R	7850244	intron	CG34384 +	chr3R	7850837	intron	CG34384 +	chr3R_6_7850001	chr3R_7850001	KT6_1-HE
1975	chr3R	7973314	7973345	chr3R	7974377	7974408	1360	12	1063	3.0	1.0	2.0	4.0	1094	chr3R	7973314	intergenic	not near genes	chr3R	7973861	intergenic	not near genes	chr3R	7974408	3` UTR	CD98hc -	chr3R_12_7970001	chr3R_7970001	KT6_1-HE
1982	chr3R	8094415	8094435	chr3R	8099721	8099741	Transpac	5	5306	1.5	0.5	1.0	2.5	5326	chr3R	8094415	intron	CG7900 +	chr3R	8097078	intron	CG7900 +	chr3R	8099741	intron	CG7900 +	chr3R_5_8095001	chr3R_8095001	KT6_1-HE
1983	chr3R	8207569	8207588	chr3R	8208415	8208434	F-element	4	846	1.0	4.5	2.8	1.1	865	chr3R	8207569	intergenic	not near genes	chr3R	8208002	intergenic	not near genes	chr3R	8208434	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	KT6_1-HE
1986	chr3R	8403004	8403041	chr3R	8412171	8412208	roo	41	9166	13.0	8.5	10.8	3.5	9204	chr3R	8403004	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412208	intron	CG45263 -	chr3R_41_8405001	chr3R_8405001	KT6_1-HE
1987	chr3R	8570486	8570489	chr3R	8575117	8575126	HMS-Beagle	4	4635	8.5	6.0	7.2	0.5	4640	chr3R	8570486	intergenic	not near genes	chr3R	8572806	intergenic	not near genes	chr3R	8575126	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	KT6_1-HE
1988	chr3R	8570495	8570505	chr3R	8575115	8575133	HMS-Beagle	4	4630	7.0	5.5	6.2	0.6	4638	chr3R	8570495	intergenic	not near genes	chr3R	8572814	intergenic	not near genes	chr3R	8575133	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	KT6_1-HE
1989	chr3R	8601767	8601799	chr3R	8610921	8610953	roo	18	9153	1.5	4.0	2.8	4.7	9186	chr3R	8601767	intron	5-HT2B +	chr3R	8606360	intron	5-HT2B +	chr3R	8610953	intron	5-HT2B +	chr3R_18_8605001	chr3R_8605001	KT6_1-HE
1993	chr3R	8707359	8707384	chr3R	8709801	8709826	jockey	10	2442	4.5	7.0	5.8	1.5	2467	chr3R	8707359	intergenic	not near genes	chr3R	8708592	intergenic	not near genes	chr3R	8709826	intergenic	not near genes	chr3R_10_8705001	chr3R_8705001	KT6_1-HE
2006	chr3R	9278790	9278807	chr3R	9284051	9284068	Rt1a	9	5261	6.0	4.0	5.0	1.5	5278	chr3R	9278790	intergenic	not near genes	chr3R	9281429	intergenic	not near genes	chr3R	9284068	intergenic	not near genes	chr3R_9_9280001	chr3R_9280001	KT6_1-HE
2009	chr3R	9319573	9319604	chr3R	9320009	9320040	jockey	15	436	2.5	7.0	4.8	2.6	467	chr3R	9319573	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320040	intron	CG8861 -	chr3R_15_9315001	chr3R_9315001	KT6_1-HE
2010	chr3R	9361815	9361834	chr3R	9362057	9362076	pogo	7	242	4.0	3.0	3.5	1.6	261	chr3R	9361815	3` UTR	CG45050 +	chr3R	9361946	3` UTR	CG45050 +	chr3R	9362076	3` UTR	CG45050 +	chr3R_7_9360001	chr3R_9360001	KT6_1-HE
2014	chr3R	9699972	9700004	chr3R	9700062	9700092	1360	6	90	1.5	2.5	2.0	2.0	120	chr3R	9699972	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700092	intron	Unc-115a -	chr3R_6_9700001	chr3R_9700001	KT6_1-HE
2020	chr3R	10231780	10231809	chr3R	10237358	10237387	mdg3	10	5578	3.0	1.0	2.0	3.3	5607	chr3R	10231780	intron	CG42795 +	chr3R	10234584	intron	CG42795 +	chr3R	10237387	intron	CG42795 +	chr3R_10_10230001	chr3R_10230001	KT6_1-HE
2035	chr3R	10804171	10804194	chr3R	10811704	10811727	17.6	10	7533	6.0	1.5	3.8	2.1	7556	chr3R	10804171	intergenic	CG14692 -	chr3R	10807949	intergenic	not near genes	chr3R	10811727	3` UTR	CG14693 -	chr3R_10_10805001	chr3R_10805001	KT6_1-HE
2041	chr3R	10957881	10957885	chr3R	10963261	10963275	Rt1c	4	5386	8.5	13.5	11.0	0.3	5394	chr3R	10957881	intergenic	not near genes	chr3R	10960578	intergenic	not near genes	chr3R	10963275	intergenic	not near genes	chr3R_4_10960001	chr3R_10960001	KT6_1-HE
2053	chr3R	11379232	11379269	chr3R	11388388	11388425	roo	25	9155	5.0	7.5	6.2	3.5	9193	chr3R	11379232	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388425	intron	pros +	chr3R_25_11380001	chr3R_11380001	KT6_1-HE
2067	chr3R	11841058	11841097	chr3R	11846250	11846289	BS	17	5192	7.5	6.0	6.8	2.2	5231	chr3R	11841058	intron	CG6959 -	chr3R	11843674	intron	CG6959 -	chr3R	11846289	intron	CG6959 -	chr3R_17_11840001	chr3R_11840001	KT6_1-HE
2071	chr3R	12022886	12022914	chr3R	12025064	12025092	pogo	7	2178	3.0	4.0	3.5	1.6	2206	chr3R	12022886	intergenic	not near genes	chr3R	12023989	intergenic	not near genes	chr3R	12025092	intergenic	not near genes	chr3R_7_12020001	chr3R_12020001	KT6_1-HE
2094	chr3R	12920150	12920186	chr3R	12925354	12925390	copia	27	5201	5.0	10.0	7.5	3.2	5240	chr3R	12920150	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925390	intron	beat-Vb +	chr3R_27_12920001	chr3R_12920001	KT6_1-HE
2102	chr3R	13135827	13135853	chr3R	13138003	13138029	pogo	11	2176	5.5	2.0	3.8	2.3	2202	chr3R	13135827	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138029	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_11_13135001	chr3R_13135001	KT6_1-HE
2103	chr3R	13143032	13143062	chr3R	13148610	13148640	mdg3	11	5576	6.0	5.0	5.5	1.7	5608	chr3R	13143032	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145836	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148640	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_11_13145001	chr3R_13145001	KT6_1-HE
2106	chr3R	13314112	13314125	chr3R	13318901	13318914	Doc	5	4789	2.0	4.0	3.0	1.2	4802	chr3R	13314112	intergenic	not near genes	chr3R	13316513	intergenic	not near genes	chr3R	13318914	intergenic	CG45080 -	chr3R_5_13315001	chr3R_13315001	KT6_1-HE
2109	chr3R	13517227	13517255	chr3R	13520045	13520073	jockey	14	2818	4.5	8.0	6.2	1.9	2846	chr3R	13517227	intergenic	not near genes	chr3R	13518650	intergenic	not near genes	chr3R	13520073	intergenic	not near genes	chr3R_14_13515001	chr3R_13515001	KT6_1-HE
2124	chr3R	14021646	14021680	chr3R	14023464	14023498	S-element	11	1818	2.5	2.5	2.5	3.1	1852	chr3R	14021646	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023498	intron	rdx -	chr3R_11_14020001	chr3R_14020001	KT6_1-HE
2130	chr3R	14180813	14180839	chr3R	14185579	14185605	F-element	12	4766	6.5	12.0	9.2	1.2	4792	chr3R	14180813	intron	Dop1R1 -	chr3R	14183209	intron	Dop1R1 -	chr3R	14185605	intron	Dop1R1 -	chr3R_12_14180001	chr3R_14180001	KT6_1-HE
2132	chr3R	14246395	14246418	chr3R	14247892	14247915	jockey	9	1496	3.0	3.0	3.0	2.2	1520	chr3R	14246395	intergenic	not near genes	chr3R	14247155	intergenic	not near genes	chr3R	14247915	intergenic	not near genes	chr3R_9_14245001	chr3R_14245001	KT6_1-HE
2151	chr3R	15041423	15041441	chr3R	15045192	15045210	Doc	9	3769	7.0	6.0	6.5	1.2	3787	chr3R	15041423	intergenic	not near genes	chr3R	15043316	intergenic	not near genes	chr3R	15045210	intergenic	not near genes	chr3R_9_15040001	chr3R_15040001	KT6_1-HE
2152	chr3R	15041443	15041456	chr3R	15045187	15045224	Doc	8	3766	4.5	5.5	5.0	1.3	3781	chr3R	15041443	intergenic	not near genes	chr3R	15043334	intergenic	not near genes	chr3R	15045224	intergenic	not near genes	chr3R_8_15040001	chr3R_15040001	KT6_1-HE
2155	chr3R	15079811	15079829	chr3R	15080053	15080071	pogo	8	242	2.0	4.0	3.0	2.0	260	chr3R	15079811	3` UTR	CG6966 -	chr3R	15079941	3` UTR	CG6966 -	chr3R	15080071	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	KT6_1-HE
2159	chr3R	15132058	15132059	chr3R	15135119	15135120	Juan	4	3061	14.5	14.5	14.5	0.3	3062	chr3R	15132058	intergenic	CG42788 -	chr3R	15133589	intergenic	not near genes	chr3R	15135120	intergenic	CG6912 -	chr3R_4_15130001	chr3R_15130001	KT6_1-HE
2160	chr3R	15132064	15132081	chr3R	15135115	15135142	Juan	13	3060	7.5	12.0	9.8	1.2	3078	chr3R	15132064	intergenic	CG42788 -	chr3R	15133603	intergenic	not near genes	chr3R	15135142	3` UTR	CG6912 -	chr3R_13_15130001	chr3R_15130001	KT6_1-HE
2162	chr3R	15162546	15162572	chr3R	15167314	15167340	F-element	11	4768	7.0	0.0	3.5	2.4	4794	chr3R	15162546	intron	Gyc88E +	chr3R	15164943	intron	Gyc88E +	chr3R	15167340	intron	Gyc88E +	chr3R_11_15160001	chr3R_15160001	KT6_1-HE
2169	chr3R	15601162	15601193	chr3R	15608685	15608716	412	21	7523	10.5	6.5	8.5	2.2	7554	chr3R	15601162	intergenic	not near genes	chr3R	15604939	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_21_15600001	chr3R_15600001	KT6_1-HE
2170	chr3R	15618751	15618764	chr3R	15626226	15626239	blood	10	7475	4.0	10.5	7.2	1.2	7488	chr3R	15618751	intergenic	not near genes	chr3R	15622495	intergenic	not near genes	chr3R	15626239	intergenic	not near genes	chr3R_10_15620001	chr3R_15620001	KT6_1-HE
2186	chr3R	16756324	16756353	chr3R	16762516	16762545	diver	14	6192	5.0	3.5	4.2	2.7	6221	chr3R	16756324	intron	bxd -	chr3R	16759434	intron	bxd -	chr3R	16762545	intron	bxd -	chr3R_14_16755001	chr3R_16755001	KT6_1-HE
2194	chr3R	17294667	17294695	chr3R	17295096	17295124	BS	10	429	5.5	4.5	5.0	1.7	457	chr3R	17294667	intergenic	not near genes	chr3R	17294896	intergenic	not near genes	chr3R	17295124	intergenic	not near genes	chr3R_10_17290001	chr3R_17290001	KT6_1-HE
2197	chr3R	17346700	17346721	chr3R	17348264	17348285	F-element	7	1564	1.5	6.0	3.8	1.5	1585	chr3R	17346700	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348285	intron	beat-IIa -	chr3R_7_17345001	chr3R_17345001	KT6_1-HE
2205	chr3R	17591285	17591320	chr3R	17591722	17591757	F-element	6	437	4.5	3.5	4.0	1.2	472	chr3R	17591285	intergenic	not near genes	chr3R	17591521	intergenic	not near genes	chr3R	17591757	intergenic	not near genes	chr3R_6_17590001	chr3R_17590001	KT6_1-HE
2213	chr3R	17925862	17925866	chr3R	17927330	17927334	hobo	5	1467	12.5	9.0	10.8	0.4	1472	chr3R	17925862	intron	cpo +	chr3R	17926598	intron	cpo +	chr3R	17927334	intron	cpo +	chr3R_5_17925001	chr3R_17925001	KT6_1-HE
2214	chr3R	17925867	17925889	chr3R	17927326	17927357	hobo	19	1465	7.0	8.0	7.5	2.2	1490	chr3R	17925867	intron	cpo +	chr3R	17926612	intron	cpo +	chr3R	17927357	intron	cpo +	chr3R_19_17925001	chr3R_17925001	KT6_1-HE
2215	chr3R	18032795	18032806	chr3R	18040466	18040477	opus	9	7670	0.0	3.0	1.5	3.6	7682	chr3R	18032795	intergenic	not near genes	chr3R	18036636	intergenic	not near genes	chr3R	18040477	intergenic	not near genes	chr3R_9_18035001	chr3R_18035001	KT6_1-HE
2217	chr3R	18061584	18061613	chr3R	18063153	18063182	F-element	14	1569	5.0	7.0	6.0	2.0	1598	chr3R	18061584	intergenic	not near genes	chr3R	18062383	intergenic	not near genes	chr3R	18063182	intergenic	not near genes	chr3R_14_18060001	chr3R_18060001	KT6_1-HE
2229	chr3R	18606501	18606533	chr3R	18610734	18610766	F-element	17	4233	8.0	4.5	6.2	2.4	4265	chr3R	18606501	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610766	intron,intron	qin +,CG14304 -	chr3R_17_18605001	chr3R_18605001	KT6_1-HE
2261	chr3R	20109538	20109567	chr3R	20114745	20114774	copia	20	5207	3.5	4.5	4.0	4.0	5236	chr3R	20109538	intergenic	not near genes	chr3R	20112156	intergenic	not near genes	chr3R	20114774	intergenic	CG10887 +	chr3R_20_20110001	chr3R_20110001	KT6_1-HE
2264	chr3R	20156690	20156721	chr3R	20165861	20165892	roo	15	9170	3.0	3.5	3.2	3.6	9202	chr3R	20156690	intergenic	not near genes	chr3R	20161291	intergenic	not near genes	chr3R	20165892	intergenic	not near genes	chr3R_15_20160001	chr3R_20160001	KT6_1-HE
2266	chr3R	20245277	20245292	chr3R	20248888	20248889	F-element	6	3609	0.0	0.5	0.2	5.0	3612	chr3R	20245277	3` UTR	Nlg4 +	chr3R	20247083	intergenic	not near genes	chr3R	20248889	intergenic	not near genes	chr3R_6_20245001	chr3R_20245001	KT6_1-HE
2270	chr3R	20266513	20266545	chr3R	20272985	20273017	Burdock	20	6471	1.0	5.5	3.2	4.8	6504	chr3R	20266513	intron	cic +	chr3R	20269765	intron	cic +	chr3R	20273017	intron	cic +	chr3R_20_20265001	chr3R_20265001	KT6_1-HE
2272	chr3R	20331001	20331032	chr3R	20331488	20331517	roo	5	487	1.5	3.0	2.2	1.6	516	chr3R	20331001	intergenic	Sirt2 +	chr3R	20331259	intergenic	Sirt2 +	chr3R	20331517	intergenic	not near genes	chr3R_5_20330001	chr3R_20330001	KT6_1-HE
2276	chr3R	20506588	20506610	chr3R	20507392	20507396	BS	7	801	3.0	3.5	3.2	1.7	808	chr3R	20506588	intergenic	Or92a +	chr3R	20506992	intergenic	CG4288 -	chr3R	20507396	3` UTR	CG4288 -	chr3R_7_20505001	chr3R_20505001	KT6_1-HE
2283	chr3R	20854498	20854510	chr3R	20859276	20859301	Doc	4	4788	7.5	1.0	4.2	0.8	4803	chr3R	20854498	intron	Ir93a -	chr3R	20856900	intron	Ir93a -	chr3R	20859301	exon	Ir93a -	chr3R_4_20855001	chr3R_20855001	KT6_1-HE
2287	chr3R	21141673	21141706	chr3R	21150154	21150181	Tirant	14	8479	3.0	3.0	3.0	3.5	8508	chr3R	21141673	intron	SNF4Agamma +	chr3R	21145927	intron	SNF4Agamma +	chr3R	21150181	intron	SNF4Agamma +	chr3R_14_21145001	chr3R_21145001	KT6_1-HE
2301	chr3R	21609001	21609037	chr3R	21611636	21611666	NOF	10	2631	2.5	0.5	1.5	4.0	2665	chr3R	21609001	intron	InR -	chr3R	21610334	intron	InR -	chr3R	21611666	intron	InR -	chr3R_10_21610001	chr3R_21610001	KT6_1-HE
2305	chr3R	21761117	21761152	chr3R	21768510	21768545	mdg1	11	7393	2.0	3.0	2.5	3.1	7428	chr3R	21761117	exon	CG42335 +	chr3R	21764831	intron	CG42335 +	chr3R	21768545	exon	CG42335 +	chr3R_11_21760001	chr3R_21760001	KT6_1-HE
2321	chr3R	22450542	22450578	chr3R	22453183	22453219	NOF	15	2639	3.0	3.0	3.0	3.8	2677	chr3R	22450542	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453219	intron	CG34376 +	chr3R_15_22450001	chr3R_22450001	KT6_1-HE
2333	chr3R	22881198	22881228	chr3R	22884905	22884917	Doc	9	3705	3.5	3.5	3.5	2.0	3719	chr3R	22881198	intergenic	not near genes	chr3R	22883058	intergenic	not near genes	chr3R	22884917	intergenic	not near genes	chr3R_9_22880001	chr3R_22880001	KT6_1-HE
2345	chr3R	23558414	23558425	chr3R	23560196	23560207	Bari1	7	1782	0.5	7.5	4.0	1.4	1793	chr3R	23558414	intron	beat-IV +	chr3R	23559310	intron	beat-IV +	chr3R	23560207	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	KT6_1-HE
2351	chr3R	23684695	23684727	chr3R	23685182	23685214	roo	10	487	5.0	3.5	4.2	1.9	519	chr3R	23684695	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685214	exon	CG18754 +	chr3R_10_23680001	chr3R_23680001	KT6_1-HE
2353	chr3R	23835401	23835421	chr3R	23844552	23844572	roo	10	9150	3.5	0.5	2.0	3.3	9171	chr3R	23835401	intron	CG34355 +	chr3R	23839986	intron	CG34355 +	chr3R	23844572	intron	CG34355 +	chr3R_10_23835001	chr3R_23835001	KT6_1-HE
2362	chr3R	24072090	24072109	chr3R	24072529	24072548	jockey	8	439	9.0	6.5	7.8	0.9	458	chr3R	24072090	intron	4EHP -	chr3R	24072319	intron	4EHP -	chr3R	24072548	intron	4EHP -	chr3R_8_24070001	chr3R_24070001	KT6_1-HE
2364	chr3R	24076916	24076939	chr3R	24078383	24078407	hobo	10	1468	3.0	4.5	3.8	2.1	1491	chr3R	24076916	intron	4EHP -	chr3R	24077662	intron	4EHP -	chr3R	24078407	intron	4EHP -	chr3R_10_24075001	chr3R_24075001	KT6_1-HE
2366	chr3R	24207220	24207246	chr3R	24212297	24212323	flea	7	5077	6.0	3.5	4.8	1.2	5103	chr3R	24207220	intron	twin -	chr3R	24209772	intron	twin -	chr3R	24212323	intron	twin -	chr3R_7_24205001	chr3R_24205001	KT6_1-HE
2375	chr3R	24493274	24493308	chr3R	24493501	24493513	BS	24	229	5.5	5.5	5.5	3.7	239	chr3R	24493274	intergenic	not near genes	chr3R	24493394	intergenic	not near genes	chr3R	24493513	intergenic	not near genes	chr3R_24_24490001	chr3R_24490001	KT6_1-HE
2381	chr3R	24730088	24730114	chr3R	24732467	24732493	Doc	7	2379	4.0	0.5	2.2	2.2	2405	chr3R	24730088	intron	tok +	chr3R	24731290	intron	tok +	chr3R	24732493	intron	tok +	chr3R_7_24730001	chr3R_24730001	KT6_1-HE
2384	chr3R	24927133	24927162	chr3R	24931925	24931954	Doc	9	4792	1.5	5.0	3.2	2.1	4821	chr3R	24927133	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931954	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	KT6_1-HE
2400	chr3R	25725825	25725857	chr3R	25734986	25735018	roo	8	9161	2.5	3.0	2.8	2.1	9193	chr3R	25725825	intron	LpR2 -	chr3R	25730422	intron	LpR2 -	chr3R	25735018	intron	LpR2 -	chr3R_8_25730001	chr3R_25730001	KT6_1-HE
2402	chr3R	25832694	25832701	chr3R	25841877	25841884	roo	4	9183	9.5	11.5	10.5	0.3	9190	chr3R	25832694	exon	alpha4GT2 +	chr3R	25837289	intron	alpha4GT2 +	chr3R	25841884	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	KT6_1-HE
2403	chr3R	25832702	25832715	chr3R	25841876	25841881	roo	7	9179	5.0	11.5	8.2	0.8	9179	chr3R	25832702	exon	alpha4GT2 +	chr3R	25837292	intron	alpha4GT2 +	chr3R	25841881	exon	alpha4GT2 +	chr3R_7_25835001	chr3R_25835001	KT6_1-HE
2409	chr3R	26108829	26108845	chr3R	26117413	26117422	Tirant	4	8582	3.0	1.5	2.2	1.2	8593	chr3R	26108829	5` UTR	CG31324 +	chr3R	26113126	intron	CG31324 +	chr3R	26117422	intron	CG31324 +	chr3R_4_26110001	chr3R_26110001	KT6_1-HE
2419	chr3R	26376323	26376358	chr3R	26385484	26385503	roo	17	9159	7.0	0.0	3.5	3.8	9180	chr3R	26376323	intergenic	not near genes	chr3R	26380913	intergenic	not near genes	chr3R	26385503	intergenic	not near genes	chr3R_17_26380001	chr3R_26380001	KT6_1-HE
2421	chr3R	26510501	26510535	chr3R	26519563	26519597	roo	16	9060	5.5	7.5	6.5	2.1	9096	chr3R	26510501	intron	plum -	chr3R	26515049	intron	plum -	chr3R	26519597	intron,5` UTR	plum -,CR45226 +	chr3R_16_26515001	chr3R_26515001	KT6_1-HE
2422	chr3R	26558325	26558356	chr3R	26565637	26565669	Stalker4	7	7313	5.5	3.0	4.2	1.3	7344	chr3R	26558325	intron	scrib +	chr3R	26561997	intron	scrib +	chr3R	26565669	intron	scrib +	chr3R_7_26560001	chr3R_26560001	KT6_1-HE
2427	chr3R	26642751	26642762	chr3R	26643146	26643157	jockey	5	395	5.0	7.5	6.2	0.7	406	chr3R	26642751	intergenic	not near genes	chr3R	26642954	intergenic	not near genes	chr3R	26643157	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	KT6_1-HE
2430	chr3R	26810551	26810585	chr3R	26811036	26811071	roo	9	485	9.0	6.0	7.5	1.1	520	chr3R	26810551	intron	Tl +	chr3R	26810811	intron	Tl +	chr3R	26811071	intron	Tl +	chr3R_9_26810001	chr3R_26810001	KT6_1-HE
2433	chr3R	27007405	27007437	chr3R	27016541	27016560	roo	17	9134	4.5	6.0	5.2	2.7	9155	chr3R	27007405	intron	RYa-R +	chr3R	27011982	intron	RYa-R +	chr3R	27016560	intron	RYa-R +	chr3R_17_27010001	chr3R_27010001	KT6_1-HE
2440	chr3R	27140515	27140548	chr3R	27148126	27148159	412	9	7611	1.0	2.0	1.5	3.6	7644	chr3R	27140515	intron	CG6051 -	chr3R	27144337	intron	CG6051 -	chr3R	27148159	intron	CG6051 -	chr3R_9_27140001	chr3R_27140001	KT6_1-HE
2442	chr3R	27342797	27342824	chr3R	27351379	27351405	Tirant	15	8582	3.0	2.5	2.8	3.9	8608	chr3R	27342797	intron	CG42534 +	chr3R	27347101	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_15_27345001	chr3R_27345001	KT6_1-HE
2452	chr3R	27521158	27521184	chr3R	27530368	27530394	roo	4	9210	1.5	1.0	1.2	1.8	9236	chr3R	27521158	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530394	intron	CG12885 +	chr3R_4_27525001	chr3R_27525001	KT6_1-HE
2463	chr3R	27856756	27856791	chr3R	27858240	27858275	hopper2	25	1483	10.0	7.0	8.5	2.6	1519	chr3R	27856756	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858275	intron	CG34353 -	chr3R_25_27855001	chr3R_27855001	KT6_1-HE
2464	chr3R	27862953	27862987	chr3R	27868259	27868293	Transpac	19	5302	3.5	5.0	4.2	3.7	5340	chr3R	27862953	intron	CG34353 -	chr3R	27865623	intron	CG34353 -	chr3R	27868293	intron	CG34353 -	chr3R_19_27865001	chr3R_27865001	KT6_1-HE
2465	chr3R	27875698	27875730	chr3R	27882754	27882786	297	27	7056	11.5	10.0	10.8	2.3	7088	chr3R	27875698	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882786	intron	CG34353 -	chr3R_27_27875001	chr3R_27875001	KT6_1-HE
2472	chr3R	28068493	28068524	chr3R	28073936	28073967	I-element	11	5443	3.0	4.5	3.8	2.3	5474	chr3R	28068493	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_11_28070001	chr3R_28070001	KT6_1-HE
2476	chr3R	28173669	28173704	chr3R	28181100	28181135	mdg1	10	7431	2.0	2.5	2.2	3.1	7466	chr3R	28173669	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181135	intron	CG34354 +	chr3R_10_28175001	chr3R_28175001	KT6_1-HE
2480	chr3R	28253337	28253371	chr3R	28255848	28255882	jockey	21	2511	4.0	7.5	5.8	3.1	2545	chr3R	28253337	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255882	intergenic	not near genes	chr3R_21_28250001	chr3R_28250001	KT6_1-HE
2482	chr3R	28302103	28302135	chr3R	28302543	28302575	jockey	9	440	3.5	4.5	4.0	1.8	472	chr3R	28302103	intergenic	not near genes	chr3R	28302339	intergenic	not near genes	chr3R	28302575	intergenic	not near genes	chr3R_9_28300001	chr3R_28300001	KT6_1-HE
2499	chr3R	28758283	28758303	chr3R	28763901	28763921	roo	6	5618	8.0	1.0	4.5	1.1	5638	chr3R	28758283	intergenic	aqrs -	chr3R	28761102	intergenic	not near genes	chr3R	28763921	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	KT6_1-HE
2500	chr3R	28763900	28763919	chr3R	28771344	28771363	Stalker4	4	7444	0.0	0.0	0.0	4.0	7463	chr3R	28763900	intergenic	not near genes	chr3R	28767632	intergenic	not near genes	chr3R	28771363	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	KT6_1-HE
2507	chr3R	29079383	29079410	chr3R	29080756	29080783	NOF	14	1373	8.5	5.5	7.0	1.8	1400	chr3R	29079383	intron	CG11873 +	chr3R	29080083	intron	CG11873 +	chr3R	29080783	intron	CG11873 +	chr3R_14_29080001	chr3R_29080001	KT6_1-HE
2512	chr3R	29319821	29319861	chr3R	29320141	29320159	jockey	12	316	1.5	3.5	2.5	3.4	338	chr3R	29319821	intergenic	Cnx99A -	chr3R	29319990	intergenic	Cnx99A -	chr3R	29320159	intergenic	not near genes	chr3R_12_29315001	chr3R_29315001	KT6_1-HE
2519	chr3R	29406617	29406644	chr3R	29407904	29407931	jockey	8	1286	3.5	3.0	3.2	1.9	1314	chr3R	29406617	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407931	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	KT6_1-HE
2527	chr3R	29882034	29882049	chr3R	29891191	29891206	roo	5	9157	2.0	3.0	2.5	1.4	9172	chr3R	29882034	intron	CG31038 +	chr3R	29886620	intron	CG31038 +	chr3R	29891206	intron	CG31038 +	chr3R_5_29885001	chr3R_29885001	KT6_1-HE
2532	chr3R	30084870	30084883	chr3R	30086328	30086335	hobo	6	1462	0.0	7.5	3.8	1.2	1465	chr3R	30084870	intron	sima +	chr3R	30085602	intron	sima +	chr3R	30086335	intron	sima +	chr3R_6_30085001	chr3R_30085001	KT6_1-HE
2535	chr3R	30238763	30238797	chr3R	30239928	30239963	1360	6	1166	1.0	0.0	0.5	4.0	1200	chr3R	30238763	intergenic	not near genes	chr3R	30239363	intergenic	not near genes	chr3R	30239963	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	KT6_1-HE
2537	chr3R	30317333	30317357	chr3R	30324926	30324950	roo	7	7593	0.5	2.0	1.2	3.2	7617	chr3R	30317333	intron	hdc +	chr3R	30321142	intron	hdc +	chr3R	30324950	intron	hdc +	chr3R_7_30320001	chr3R_30320001	KT6_1-HE
2539	chr3R	30396216	30396247	chr3R	30404483	30404514	roo	8	8267	8.5	5.5	7.0	1.0	8298	chr3R	30396216	intergenic	not near genes	chr3R	30400365	intergenic	not near genes	chr3R	30404514	5` UTR	CR45570 +	chr3R_8_30400001	chr3R_30400001	KT6_1-HE
2543	chr3R	30480471	30480513	chr3R	30482940	30482982	jockey	10	2468	2.0	2.0	2.0	3.3	2511	chr3R	30480471	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482982	intron	PH4alphaEFB +	chr3R_10_30480001	chr3R_30480001	KT6_1-HE
2549	chr3R	30679539	30679547	chr3R	30687009	30687017	blood	8	7470	6.0	9.5	7.8	0.9	7478	chr3R	30679539	intergenic	not near genes	chr3R	30683278	intergenic	not near genes	chr3R	30687017	intergenic	not near genes	chr3R_8_30680001	chr3R_30680001	KT6_1-HE
2553	chr3R	30818807	30818842	chr3R	30820373	30820380	1360	11	1563	2.0	1.5	1.8	3.9	1573	chr3R	30818807	intron	cindr +	chr3R	30819594	intron	cindr +	chr3R	30820380	intron	cindr +	chr3R_11_30815001	chr3R_30815001	KT6_1-HE
2560	chr3R	31074229	31074253	chr3R	31081828	31081838	springer	7	7597	4.0	0.0	2.0	2.3	7609	chr3R	31074229	intron	Sox100B +	chr3R	31078034	intron	Sox100B +	chr3R	31081838	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	KT6_1-HE
2564	chr3R	31279371	31279403	chr3R	31285563	31285585	diver	8	6188	2.5	5.0	3.8	1.7	6214	chr3R	31279371	intergenic	not near genes	chr3R	31282478	intergenic	not near genes	chr3R	31285585	intergenic	not near genes	chr3R_8_31280001	chr3R_31280001	KT6_1-HE
2566	chr3R	31413087	31413121	chr3R	31418288	31418322	copia	15	5201	4.0	2.0	3.0	3.8	5235	chr3R	31413087	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418322	intron	Gprk2 +	chr3R_15_31415001	chr3R_31415001	KT6_1-HE
2575	chr3R	31691529	31691560	chr3R	31696296	31696327	Doc	6	4767	5.5	5.0	5.2	1.0	4798	chr3R	31691529	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696327	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	KT6_1-HE
2580	chr3R	31997991	31998023	chr3R	32005462	32005463	blood	11	7467	3.5	6.0	4.8	1.9	7472	chr3R	31997991	intron	heph -	chr3R	32001727	intron	heph -	chr3R	32005463	intron	heph -	chr3R_11_32000001	chr3R_32000001	KT6_1-HE
2582	chr4	76493	76518	chr4	81937	81962	I-element	7	5444	5.5	5.0	5.2	1.1	5469	chr4	76493	intron	pan +	chr4	79228	intron	pan +	chr4	81962	intron	pan +	chr4_7_75001	chr4_75001	KT6_1-HE
2584	chr4	320004	320015	chr4	328181	328192	Stalker2	4	8177	1.0	0.5	0.8	2.2	8188	chr4	320004	3` UTR	CG32850 +	chr4	324098	intron	CG32850 +	chr4	328192	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_4_320001	chr4_320001	KT6_1-HE
2585	chr4	671603	671632	chr4	680187	680216	Tirant	21	8584	7.5	7.5	7.5	2.5	8613	chr4	671603	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680216	intron	CG11360 +	chr4_21_675001	chr4_675001	KT6_1-HE
2589	chr4	896643	896680	chr4	898305	898342	INE-1	17	1662	46.5	26.5	36.5	0.5	1699	chr4	896643	intron	unc-13 -	chr4	897492	intron	unc-13 -	chr4	898342	intron	unc-13 -	chr4_17_895001	chr4_895001	KT6_1-HE
2593	chrX	295864	295882	chrX	303485	303502	412	11	7621	5.5	7.5	6.5	1.5	7638	chrX	295864	intron	CG3777 +	chrX	299683	intron	CG3777 +	chrX	303502	intron	CG3777 +	chrX_11_295001	chrX_295001	KT6_1-HE
2594	chrX	318468	318481	chrX	323555	323568	flea	9	5087	11.5	10.0	10.8	0.8	5100	chrX	318468	intron,intron	CG3777 +,CG32816 -	chrX	321018	intron,intron	CG3777 +,CG32816 -	chrX	323568	intron,intron	CG3777 +,CG32816 -	chrX_9_320001	chrX_320001	KT6_1-HE
2595	chrX	318493	318500	chrX	323560	323587	flea	6	5084	7.0	12.5	9.8	0.6	5094	chrX	318493	intron,intron	CG3777 +,CG32816 -	chrX	321040	intron,intron	CG3777 +,CG32816 -	chrX	323587	intron,intron	CG3777 +,CG32816 -	chrX_6_320001	chrX_320001	KT6_1-HE
2596	chrX	428422	428431	chrX	434608	434617	3S18	4	6186	9.5	2.5	6.0	0.6	6195	chrX	428422	intron	CG32816 -	chrX	431520	intron	CG32816 -	chrX	434617	intron	CG32816 -	chrX_4_430001	chrX_430001	KT6_1-HE
2597	chrX	428435	428450	chrX	434602	434636	3S18	4	6181	7.5	2.5	5.0	0.7	6201	chrX	428435	intron	CG32816 -	chrX	431536	intron	CG32816 -	chrX	434636	intron	CG32816 -	chrX_4_430001	chrX_430001	KT6_1-HE
2601	chrX	551421	551451	chrX	558983	559014	412	10	7562	6.0	5.0	5.5	1.5	7593	chrX	551421	intron	Appl +	chrX	555218	intron	Appl +	chrX	559014	intron	Appl +	chrX_10_555001	chrX_555001	KT6_1-HE
2605	chrX	812267	812298	chrX	817901	817932	297	8	5634	0.5	2.0	1.2	3.6	5665	chrX	812267	intron	CG43867 -	chrX	815100	intron	CG43867 -	chrX	817932	intron	CG43867 -	chrX_8_815001	chrX_815001	KT6_1-HE
2606	chrX	827600	827635	chrX	835393	835428	roo	13	7793	5.0	2.5	3.8	2.7	7828	chrX	827600	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835428	intron	CG43867 -	chrX_13_830001	chrX_830001	KT6_1-HE
2609	chrX	906719	906731	chrX	908501	908521	S-element	11	1788	5.0	7.0	6.0	1.6	1802	chrX	906719	intron	CG43867 -	chrX	907620	intron	CG43867 -	chrX	908521	intron	CG43867 -	chrX_11_905001	chrX_905001	KT6_1-HE
2613	chrX	1357778	1357806	chrX	1367948	1367977	Doc	8	10171	3.0	2.5	2.8	2.1	10199	chrX	1357778	intergenic	png -	chrX	1362878	intergenic	not near genes	chrX	1367977	intergenic	not near genes	chrX_8_1360001	chrX_1360001	KT6_1-HE
2616	chrX	1518038	1518068	chrX	1523441	1523471	jockey	8	5403	3.0	3.0	3.0	2.0	5433	chrX	1518038	intergenic	inc +	chrX	1520754	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_8_1520001	chrX_1520001	KT6_1-HE
2617	chrX	1627975	1628006	chrX	1635443	1635464	gtwin	17	7468	5.5	7.5	6.5	2.3	7489	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631720	intron,intron	Mur2B -,br +	chrX	1635464	intron,intron	Mur2B -,br +	chrX_17_1630001	chrX_1630001	KT6_1-HE
2621	chrX	1954894	1954917	chrX	1962835	1962852	Stalker2	6	7940	3.0	3.0	3.0	1.5	7958	chrX	1954894	intron	Hr4 +	chrX	1958873	intron	Hr4 +	chrX	1962852	intron	Hr4 +	chrX_6_1955001	chrX_1955001	KT6_1-HE
2627	chrX	2399834	2399871	chrX	2408188	2408216	roo	16	8352	7.0	1.5	4.2	3.1	8382	chrX	2399834	intergenic	not near genes	chrX	2404025	intergenic	not near genes	chrX	2408216	intergenic	not near genes	chrX_16_2400001	chrX_2400001	KT6_1-HE
2637	chrX	2844896	2844933	chrX	2852307	2852344	mdg1	20	7411	5.0	4.5	4.8	3.4	7448	chrX	2844896	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852344	intron	kirre +	chrX_20_2845001	chrX_2845001	KT6_1-HE
2640	chrX	3058024	3058052	chrX	3058266	3058294	pogo	11	242	5.5	4.5	5.0	1.8	270	chrX	3058024	intron	kirre +	chrX	3058159	intron	kirre +	chrX	3058294	intron	kirre +	chrX_11_3055001	chrX_3055001	KT6_1-HE
2641	chrX	3075632	3075667	chrX	3080939	3080974	Transpac	17	5307	4.0	5.5	4.8	2.9	5342	chrX	3075632	intron	kirre +	chrX	3078303	intron	kirre +	chrX	3080974	intron	kirre +	chrX_17_3075001	chrX_3075001	KT6_1-HE
2651	chrX	3415015	3415051	chrX	3421201	3421237	3S18	8	6186	1.5	1.0	1.2	3.6	6222	chrX	3415015	intron,intron	CR44999 +,CG12535 -	chrX	3418126	intron,intron	CR44999 +,CG12535 -	chrX	3421237	intron,intron	CR44999 +,CG12535 -	chrX_8_3415001	chrX_3415001	KT6_1-HE
2653	chrX	3493091	3493117	chrX	3502251	3502277	roo	6	9160	2.0	1.5	1.8	2.1	9186	chrX	3493091	intron,intron	CR44999 +,Gas8 -	chrX	3497684	intron,intron	CR44999 +,Gas8 -	chrX	3502277	intron,intron	CR44999 +,Gas8 -	chrX_6_3495001	chrX_3495001	KT6_1-HE
2656	chrX	3597547	3597584	chrX	3619716	3619753	roo	21	22169	8.0	5.5	6.8	2.7	22206	chrX	3597547	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619753	intron	AstA-R1 +	chrX_21_3605001	chrX_3605001	KT6_1-HE
2658	chrX	3726757	3726797	chrX	3730155	3730195	NOF	8	3398	3.0	0.0	1.5	3.2	3438	chrX	3726757	intron	tlk +	chrX	3728476	intron	tlk +	chrX	3730195	intron	tlk +	chrX_8_3725001	chrX_3725001	KT6_1-HE
2667	chrX	4157885	4157922	chrX	4164925	4164962	297	27	7039	7.5	10.5	9.0	2.7	7077	chrX	4157885	intron	Fas2 -	chrX	4161424	intron	Fas2 -	chrX	4164962	intron	Fas2 -	chrX_27_4160001	chrX_4160001	KT6_1-HE
2677	chrX	4700393	4700418	chrX	4700737	4700762	jockey	11	344	5.0	1.5	3.2	2.6	369	chrX	4700393	3` UTR	ctp +	chrX	4700578	3` UTR	ctp +	chrX	4700762	3` UTR	ctp +	chrX_11_4700001	chrX_4700001	KT6_1-HE
2678	chrX	4731810	4731830	chrX	4736904	4736924	jockey	10	5094	7.5	5.0	6.2	1.4	5114	chrX	4731810	intergenic	not near genes	chrX	4734367	intergenic	not near genes	chrX	4736924	intergenic	not near genes	chrX_10_4730001	chrX_4730001	KT6_1-HE
2681	chrX	4763249	4763283	chrX	4763737	4763772	Stalker4	9	489	4.0	7.5	5.8	1.3	523	chrX	4763249	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763772	intergenic	not near genes	chrX_9_4760001	chrX_4760001	KT6_1-HE
2682	chrX	4792379	4792411	chrX	4792813	4792845	jockey	11	434	0.0	8.5	4.2	2.1	466	chrX	4792379	intergenic	not near genes	chrX	4792612	intergenic	not near genes	chrX	4792845	intergenic	not near genes	chrX_11_4790001	chrX_4790001	KT6_1-HE
2683	chrX	4827969	4828001	chrX	4835340	4835373	Stalker4	18	7372	4.0	7.5	5.8	2.6	7404	chrX	4827969	intergenic	not near genes	chrX	4831671	intergenic	not near genes	chrX	4835373	intergenic	not near genes	chrX_18_4830001	chrX_4830001	KT6_1-HE
2687	chrX	4990041	4990077	chrX	4997256	4997292	roo	13	7215	5.0	6.5	5.8	1.9	7251	chrX	4990041	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997292	intron	CR44833 -	chrX_13_4990001	chrX_4990001	KT6_1-HE
2689	chrX	5096284	5096306	chrX	5103850	5103872	springer	7	7566	0.0	5.5	2.8	1.8	7588	chrX	5096284	intron,intron	CG15465 +,rg +	chrX	5100078	intron,intron	CG15465 +,rg +	chrX	5103872	intron,intron	CG15465 +,rg +	chrX_7_5100001	chrX_5100001	KT6_1-HE
2693	chrX	5338708	5338722	chrX	5339962	5339976	jockey	5	1254	6.5	6.0	6.2	0.7	1268	chrX	5338708	intergenic	not near genes	chrX	5339342	intergenic	not near genes	chrX	5339976	intergenic	SK +	chrX_5_5335001	chrX_5335001	KT6_1-HE
2694	chrX	5338723	5338740	chrX	5339959	5339981	jockey	4	1242	5.5	6.0	5.8	0.6	1258	chrX	5338723	intergenic	not near genes	chrX	5339352	intergenic	not near genes	chrX	5339981	intergenic	SK +	chrX_4_5335001	chrX_5335001	KT6_1-HE
2701	chrX	5524849	5524857	chrX	5528733	5528741	412	5	3884	3.5	0.5	2.0	1.7	3892	chrX	5524849	intergenic	snoRNA:Psi28S-3342 -	chrX	5526795	intergenic	not near genes	chrX	5528741	intergenic	Vsx2 -	chrX_5_5525001	chrX_5525001	KT6_1-HE
2713	chrX	6171576	6171595	chrX	6179014	6179033	Quasimodo	14	7438	2.5	7.0	4.8	2.4	7457	chrX	6171576	intron	Ca-alpha1T -	chrX	6175304	intron	Ca-alpha1T -	chrX	6179033	intron	Ca-alpha1T -	chrX_14_6175001	chrX_6175001	KT6_1-HE
2714	chrX	6335213	6335242	chrX	6337724	6337753	Tirant	11	2511	0.0	1.5	0.8	6.1	2540	chrX	6335213	intergenic	not near genes	chrX	6336483	intergenic	not near genes	chrX	6337753	intergenic	CG3842 +	chrX_11_6335001	chrX_6335001	KT6_1-HE
2715	chrX	6392870	6392900	chrX	6397636	6397666	Doc	13	4765	4.0	9.5	6.8	1.7	4796	chrX	6392870	intergenic	not near genes	chrX	6395268	intergenic	not near genes	chrX	6397666	intergenic	not near genes	chrX_13_6395001	chrX_6395001	KT6_1-HE
2717	chrX	6445318	6445335	chrX	6451077	6451094	297	5	5759	3.0	10.0	6.5	0.7	5776	chrX	6445318	intron	CG42340 -	chrX	6448206	intron	CG42340 -	chrX	6451094	intron	CG42340 -	chrX_5_6445001	chrX_6445001	KT6_1-HE
2720	chrX	6562816	6562850	chrX	6571299	6571333	Tirant	10	8483	2.5	5.0	3.8	2.1	8517	chrX	6562816	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571333	intron	CG34417 +	chrX_10_6565001	chrX_6565001	KT6_1-HE
2721	chrX	6605480	6605495	chrX	6608503	6608518	Burdock	4	3023	1.5	0.5	1.0	2.0	3038	chrX	6605480	intron	pigs +	chrX	6606999	intron	pigs +	chrX	6608518	intron	pigs +	chrX_4_6605001	chrX_6605001	KT6_1-HE
2730	chrX	7023598	7023631	chrX	7030989	7031022	Tabor	10	7390	5.0	2.5	3.8	2.1	7424	chrX	7023598	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031022	intron	CG12541 -	chrX_10_7025001	chrX_7025001	KT6_1-HE
2732	chrX	7125242	7125266	chrX	7134402	7134426	roo	7	9160	4.0	0.0	2.0	2.3	9184	chrX	7125242	intergenic	not near genes	chrX	7129834	intergenic	not near genes	chrX	7134426	intergenic	not near genes	chrX_7_7125001	chrX_7125001	KT6_1-HE
2737	chrX	7702905	7702924	chrX	7703345	7703364	jockey	7	440	8.5	7.5	8.0	0.8	459	chrX	7702905	intron	CHES-1-like -	chrX	7703134	intron	CHES-1-like -	chrX	7703364	intron	CHES-1-like -	chrX_7_7700001	chrX_7700001	KT6_1-HE
2738	chrX	7845724	7845738	chrX	7847216	7847230	hopper2	7	1492	8.5	8.0	8.2	0.8	1506	chrX	7845724	intergenic	not near genes	chrX	7846477	intergenic	not near genes	chrX	7847230	intergenic	not near genes	chrX_7_7845001	chrX_7845001	KT6_1-HE
2740	chrX	8031420	8031448	chrX	8035730	8035758	Juan	14	4310	8.5	6.0	7.2	1.7	4338	chrX	8031420	intergenic	not near genes	chrX	8033589	intergenic	not near genes	chrX	8035758	3` UTR	CG2233 -	chrX_14_8030001	chrX_8030001	KT6_1-HE
2743	chrX	8364841	8364873	chrX	8365239	8365271	BS	23	398	2.5	5.5	4.0	4.6	430	chrX	8364841	intron	nAChRalpha3 -	chrX	8365056	intron	nAChRalpha3 -	chrX	8365271	intron	nAChRalpha3 -	chrX_23_8365001	chrX_8365001	KT6_1-HE
2754	chrX	8922324	8922363	chrX	8922759	8922798	jockey	19	434	8.0	2.5	5.2	3.1	474	chrX	8922324	intron	rdgA +	chrX	8922561	intron	rdgA +	chrX	8922798	intron	rdgA +	chrX_19_8920001	chrX_8920001	KT6_1-HE
2755	chrX	8927586	8927615	chrX	8929857	8929886	NOF	13	2270	2.0	3.5	2.8	3.4	2300	chrX	8927586	intron	rdgA +	chrX	8928736	intron	rdgA +	chrX	8929886	intron	rdgA +	chrX_13_8925001	chrX_8925001	KT6_1-HE
2756	chrX	8948757	8948791	chrX	8956268	8956302	roo	15	7511	4.0	5.0	4.5	2.7	7545	chrX	8948757	intron	rdgA +	chrX	8952530	intron	rdgA +	chrX	8956302	intron	rdgA +	chrX_15_8950001	chrX_8950001	KT6_1-HE
2767	chrX	9508131	9508135	chrX	9509650	9509654	jockey	4	1519	10.0	3.0	6.5	0.5	1523	chrX	9508131	intron	CG32700 -	chrX	9508892	intron	CG32700 -	chrX	9509654	intron	CG32700 -	chrX_4_9505001	chrX_9505001	KT6_1-HE
2768	chrX	9508142	9508163	chrX	9509649	9509682	jockey	7	1517	6.0	2.5	4.2	1.3	1540	chrX	9508142	intron	CG32700 -	chrX	9508912	intron	CG32700 -	chrX	9509682	intron	CG32700 -	chrX_7_9505001	chrX_9505001	KT6_1-HE
2769	chrX	9575801	9575823	chrX	9576126	9576148	mdg3	4	325	2.0	3.5	2.8	1.1	347	chrX	9575801	intron,exon	CG32699 -,CG42395 -	chrX	9575974	intron,intron	CG32699 -,CG42395 -	chrX	9576148	intron,5` UTR	CG32699 -,CG42395 -	chrX_4_9575001	chrX_9575001	KT6_1-HE
2773	chrX	9744055	9744065	chrX	12649914	12649918	gypsy5	8	2905858	21.0	3.5	12.2	0.6	2905863	chrX	9744055	intron	Sp1 +	chrX	11196986	intergenic	not near genes	chrX	12649918	intron	Tomosyn +	chrX_8_11195001	chrX_11195001	KT6_1-HE
2780	chrX	10138214	10138248	chrX	10145719	10145753	412	10	7505	3.5	0.0	1.8	3.6	7539	chrX	10138214	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145753	intron,intron	RhoU +,CR44894 -	chrX_10_10140001	chrX_10140001	KT6_1-HE
2782	chrX	10267304	10267333	chrX	10276455	10276484	roo	9	9151	3.0	4.0	3.5	2.0	9180	chrX	10267304	3` UTR	alpha-Man-I -	chrX	10271894	intron	alpha-Man-I -	chrX	10276484	3` UTR	alpha-Man-I -	chrX_9_10270001	chrX_10270001	KT6_1-HE
2788	chrX	10525061	10525072	chrX	10532131	10532142	297	5	7070	7.5	4.0	5.8	0.7	7081	chrX	10525061	intron	spri -	chrX	10528602	intron	spri -	chrX	10532142	intron	spri -	chrX_5_10525001	chrX_10525001	KT6_1-HE
2791	chrX	10550853	10550884	chrX	10552321	10552352	hobo	14	1466	4.0	3.0	3.5	3.1	1499	chrX	10550853	intron	spri -	chrX	10551602	intron	spri -	chrX	10552352	intron	spri -	chrX_14_10550001	chrX_10550001	KT6_1-HE
2795	chrX	10686066	10686084	chrX	10691213	10691231	roo	13	5147	6.0	2.5	4.2	2.5	5165	chrX	10686066	intron	X11Lbeta +	chrX	10688648	intron	X11Lbeta +	chrX	10691231	intron	X11Lbeta +	chrX_13_10685001	chrX_10685001	KT6_1-HE
2802	chrX	11194449	11194458	chrX	11201871	11201880	gypsy5	5	7422	1.5	9.0	5.2	0.8	7431	chrX	11194449	intergenic	not near genes	chrX	11198164	intergenic	not near genes	chrX	11201880	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	KT6_1-HE
2804	chrX	11268560	11268594	chrX	11270054	11270066	hopper2	11	1491	6.0	0.0	3.0	2.8	1506	chrX	11268560	intron	CG44422 -	chrX	11269313	intron	CG44422 -	chrX	11270066	intron	CG44422 -	chrX_11_11265001	chrX_11265001	KT6_1-HE
2806	chrX	11312063	11312090	chrX	11319417	11319444	Stalker2	6	7350	1.5	3.0	2.2	1.9	7381	chrX	11312063	intergenic	not near genes	chrX	11315754	intergenic	not near genes	chrX	11319444	intergenic	not near genes	chrX_6_11315001	chrX_11315001	KT6_1-HE
2811	chrX	11571451	11571484	chrX	11571693	11571726	pogo	8	242	4.0	2.5	3.2	1.9	275	chrX	11571451	3` UTR	Kmn1 -	chrX	11571588	3` UTR	Kmn1 -	chrX	11571726	3` UTR	Kmn1 -	chrX_8_11570001	chrX_11570001	KT6_1-HE
2813	chrX	11645114	11645136	chrX	11648282	11648307	NOF	6	3170	3.0	2.0	2.5	1.7	3193	chrX	11645114	intron	Ptp10D +	chrX	11646710	intron	Ptp10D +	chrX	11648307	intron	Ptp10D +	chrX_6_11645001	chrX_11645001	KT6_1-HE
2827	chrX	12168137	12168166	chrX	12173580	12173609	I-element	8	5443	4.5	8.0	6.2	1.1	5472	chrX	12168137	intron	Ten-a +	chrX	12170873	intron	Ten-a +	chrX	12173609	intron	Ten-a +	chrX_8_12170001	chrX_12170001	KT6_1-HE
2859	chrX	13401481	13401521	chrX	13401834	13401874	jockey	4	353	0.5	1.5	1.0	2.0	393	chrX	13401481	intergenic	CG1673 +,CG12725 -	chrX	13401678	intergenic	CG12725 -,CG1673 +	chrX	13401874	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	KT6_1-HE
2860	chrX	13429461	13429494	chrX	13430611	13430644	jockey	9	1150	3.5	3.0	3.2	2.1	1183	chrX	13429461	intergenic	not near genes	chrX	13430052	intergenic	not near genes	chrX	13430644	intergenic	not near genes	chrX_9_13430001	chrX_13430001	KT6_1-HE
2862	chrX	13463660	13463678	chrX	13469223	13469256	mdg3	7	5576	5.0	5.0	5.0	1.2	5596	chrX	13463660	intron	Neto +	chrX	13466458	intron	Neto +	chrX	13469256	intron	Neto +	chrX_7_13465001	chrX_13465001	KT6_1-HE
2871	chrX	13937983	13937994	chrX	13941255	13941266	I-element	7	3272	0.0	0.0	0.0	7.0	3283	chrX	13937983	intron	mamo -	chrX	13939624	intron	mamo -	chrX	13941266	intron	mamo -	chrX_7_13935001	chrX_13935001	KT6_1-HE
2876	chrX	14030776	14030784	chrX	14035364	14035372	copia	4	4588	0.0	5.0	2.5	1.1	4596	chrX	14030776	intergenic	not near genes	chrX	14033074	intergenic	not near genes	chrX	14035372	intergenic	not near genes	chrX_4_14030001	chrX_14030001	KT6_1-HE
2877	chrX	14105021	14105056	chrX	14114173	14114208	roo	20	9152	2.0	5.5	3.8	4.2	9187	chrX	14105021	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114208	5` UTR	CR44657 +	chrX_20_14105001	chrX_14105001	KT6_1-HE
2880	chrX	14157592	14157599	chrX	14163249	14163257	297	4	5658	5.0	1.5	3.2	1.0	5665	chrX	14157592	intergenic	not near genes	chrX	14160424	intergenic	not near genes	chrX	14163257	intergenic	not near genes	chrX_4_14160001	chrX_14160001	KT6_1-HE
2882	chrX	14416307	14416337	chrX	14421075	14421105	F-element	17	4768	8.0	8.5	8.2	1.8	4798	chrX	14416307	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421105	intron	dpr8 +	chrX_17_14415001	chrX_14415001	KT6_1-HE
2886	chrX	14589687	14589708	chrX	14589929	14589950	pogo	16	242	5.0	1.5	3.2	3.8	263	chrX	14589687	intron	CG9413 -	chrX	14589818	intron	CG9413 -	chrX	14589950	intron	CG9413 -	chrX_16_14585001	chrX_14585001	KT6_1-HE
2889	chrX	14636461	14636493	chrX	14641903	14641935	I-element	16	5441	6.5	7.0	6.8	2.1	5474	chrX	14636461	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641935	intron	NetA -	chrX_16_14635001	chrX_14635001	KT6_1-HE
2897	chrX	14778026	14778060	chrX	14782824	14782852	Doc	14	4798	4.5	3.0	3.8	2.9	4826	chrX	14778026	intergenic	CG5347 +	chrX	14780439	intergenic	not near genes	chrX	14782852	intergenic	Ag5r2 -	chrX_14_14780001	chrX_14780001	KT6_1-HE
2898	chrX	14818767	14818794	chrX	14823972	14823999	copia	7	5203	1.5	4.5	3.0	1.8	5232	chrX	14818767	intron	rut -	chrX	14821383	intron	rut -	chrX	14823999	intron	rut -	chrX_7_14820001	chrX_14820001	KT6_1-HE
2901	chrX	14936871	14936889	chrX	14946129	14946147	roo	6	9258	4.0	1.5	2.8	1.6	9276	chrX	14936871	intron	pdgy -	chrX	14941509	intron	pdgy -	chrX	14946147	intron	pdgy -	chrX_6_14940001	chrX_14940001	KT6_1-HE
2910	chrX	15273704	15273738	chrX	15274871	15274906	1360	18	1167	8.5	3.5	6.0	2.6	1202	chrX	15273704	intergenic	not near genes	chrX	15274305	intergenic	not near genes	chrX	15274906	intergenic	not near genes	chrX_18_15270001	chrX_15270001	KT6_1-HE
2913	chrX	15413047	15413084	chrX	15417350	15417387	Juan	33	4302	9.5	7.0	8.2	3.6	4340	chrX	15413047	intron	Cngl -	chrX	15415217	intron	Cngl -	chrX	15417387	intron	Cngl -	chrX_33_15415001	chrX_15415001	KT6_1-HE
2915	chrX	15421918	15421952	chrX	15423430	15423464	pogo	14	1512	6.0	6.5	6.2	1.9	1546	chrX	15421918	intron	Cngl -	chrX	15422691	intron	Cngl -	chrX	15423464	intron	Cngl -	chrX_14_15420001	chrX_15420001	KT6_1-HE
2917	chrX	15435687	15435705	chrX	15436120	15436139	rover	15	434	12.0	16.5	14.2	1.0	452	chrX	15435687	intron	Cngl -	chrX	15435913	intron	Cngl -	chrX	15436139	intron	Cngl -	chrX_15_15435001	chrX_15435001	KT6_1-HE
2935	chrX	16222788	16222801	chrX	16231139	16231151	roo	6	8351	5.0	5.0	5.0	1.0	8363	chrX	16222788	intergenic	not near genes	chrX	16226970	intergenic	not near genes	chrX	16231151	intergenic	not near genes	chrX_6_16225001	chrX_16225001	KT6_1-HE
2938	chrX	16492643	16492679	chrX	16498221	16498257	mdg3	26	5578	5.5	7.0	6.2	3.6	5614	chrX	16492643	intron	para -	chrX	16495450	intron	para -	chrX	16498257	intron	para -	chrX_26_16495001	chrX_16495001	KT6_1-HE
2962	chrX	17195203	17195233	chrX	17200289	17200320	flea	9	5086	6.0	3.5	4.8	1.6	5117	chrX	17195203	3` UTR	baz +	chrX	17197762	3` UTR	baz +	chrX	17200320	3` UTR	baz +	chrX_9_17195001	chrX_17195001	KT6_1-HE
2971	chrX	17556947	17556956	chrX	17557447	17557456	mdg1	5	500	4.5	3.5	4.0	1.0	509	chrX	17556947	intron	CG43658 -	chrX	17557202	intron	CG43658 -	chrX	17557456	intron	CG43658 -	chrX_5_17555001	chrX_17555001	KT6_1-HE
2975	chrX	17792958	17792979	chrX	17796257	17796278	flea	6	3299	3.0	7.5	5.2	1.0	3320	chrX	17792958	intron	OdsH +	chrX	17794618	intron	OdsH +	chrX	17796278	intron	OdsH +	chrX_6_17790001	chrX_17790001	KT6_1-HE
2986	chrX	18194064	18194104	chrX	18194600	18194635	BS	14	536	7.0	3.5	5.2	2.3	571	chrX	18194064	intron	Frq2 +	chrX	18194350	intron	Frq2 +	chrX	18194635	intron	Frq2 +	chrX_14_18190001	chrX_18190001	KT6_1-HE
2989	chrX	18429493	18429524	chrX	18434805	18434836	Transpac	17	5312	5.5	10.5	8.0	1.9	5343	chrX	18429493	intergenic	not near genes	chrX	18432164	intergenic	not near genes	chrX	18434836	intergenic	not near genes	chrX_17_18430001	chrX_18430001	KT6_1-HE
2991	chrX	18555375	18555412	chrX	18556898	18556935	transib2	15	1522	3.0	4.0	3.5	3.3	1560	chrX	18555375	intron	Bx +	chrX	18556155	intron	Bx +	chrX	18556935	intron	Bx +	chrX_15_18555001	chrX_18555001	KT6_1-HE
3003	chrX	19060402	19060437	chrX	19065187	19065222	Doc	6	4785	6.5	4.0	5.2	1.0	4820	chrX	19060402	intron	CG14190 +	chrX	19062812	intron	CG14190 +	chrX	19065222	intron	CG14190 +	chrX_6_19060001	chrX_19060001	KT6_1-HE
3012	chrX	19356986	19357017	chrX	19358428	19358459	NOF	21	1442	6.5	6.0	6.2	2.9	1473	chrX	19356986	intron	kek5 +	chrX	19357722	intron	kek5 +	chrX	19358459	intron	kek5 +	chrX_21_19355001	chrX_19355001	KT6_1-HE
3014	chrX	19380154	19380188	chrX	19380396	19380430	pogo	31	242	5.0	4.0	4.5	5.6	276	chrX	19380154	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380430	intron	kek5 +	chrX_31_19380001	chrX_19380001	KT6_1-HE
3017	chrX	19472126	19472148	chrX	19472697	19472719	jockey	4	571	1.5	3.0	2.2	1.2	593	chrX	19472126	intergenic	kek5 +	chrX	19472422	intergenic	not near genes	chrX	19472719	intergenic	not near genes	chrX_4_19470001	chrX_19470001	KT6_1-HE
3020	chrX	19710072	19710104	chrX	19711859	19711891	S-element	16	1787	3.0	3.0	3.0	4.0	1819	chrX	19710072	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711891	intron	meso18E -	chrX_16_19710001	chrX_19710001	KT6_1-HE
3054	chrX	20377325	20377349	chrX	20378793	20378817	hobo	6	1468	3.5	5.5	4.5	1.1	1492	chrX	20377325	intergenic	not near genes	chrX	20378071	intergenic	not near genes	chrX	20378817	intergenic	not near genes	chrX_6_20375001	chrX_20375001	KT6_1-HE
3063	chrX	20504130	20504157	chrX	20505652	20505679	transib2	12	1522	6.5	4.0	5.2	1.9	1549	chrX	20504130	intron	RhoGAP19D -	chrX	20504904	intron	RhoGAP19D -	chrX	20505679	intron	RhoGAP19D -	chrX_12_20500001	chrX_20500001	KT6_1-HE
3074	chrX	20836725	20836758	chrX	20844328	20844361	roo	16	7602	3.0	1.0	2.0	5.3	7636	chrX	20836725	intron	shakB -	chrX	20840543	intron	shakB -	chrX	20844361	intron	shakB -	chrX_16_20840001	chrX_20840001	KT6_1-HE
3075	chrX	20940716	20940755	chrX	20942186	20942225	hobo	22	1470	6.5	3.5	5.0	3.7	1509	chrX	20940716	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942225	intergenic	not near genes	chrX_22_20940001	chrX_20940001	KT6_1-HE
3077	chrX	20956988	20957014	chrX	20962431	20962457	I-element	7	5443	2.0	3.5	2.8	1.8	5469	chrX	20956988	intergenic	not near genes	chrX	20959722	intergenic	not near genes	chrX	20962457	intergenic	Ser6 -	chrX_7_20955001	chrX_20955001	KT6_1-HE
3082	chrX	21061872	21061890	chrX	21062358	21062376	roo	4	486	5.0	2.5	3.8	0.8	504	chrX	21061872	intron	bves +	chrX	21062124	intron	bves +	chrX	21062376	intron,3` UTR	bves +,CG32512 -	chrX_4_21060001	chrX_21060001	KT6_1-HE
3083	chrX	21086127	21086163	chrX	21087157	21087193	jockey	23	1030	6.5	7.5	7.0	2.9	1066	chrX	21086127	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087193	intergenic	not near genes	chrX_23_21085001	chrX_21085001	KT6_1-HE
3089	chrX	21254707	21254736	chrX	21255291	21255323	hopper2	8	586	2.5	4.0	3.2	1.9	616	chrX	21254707	intron	CG32521 -	chrX	21255015	intron	CG32521 -	chrX	21255323	intron	CG32521 -	chrX_8_21255001	chrX_21255001	KT6_1-HE
3102	chrX	21458691	21458727	chrX	21464128	21464164	Ivk	14	5437	0.0	4.5	2.2	4.4	5473	chrX	21458691	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464164	intergenic	not near genes	chrX_14_21460001	chrX_21460001	KT6_1-HE
3103	chrX	21474410	21474429	chrX	21474777	21474796	1731	6	367	4.5	4.0	4.2	1.2	386	chrX	21474410	intergenic	not near genes	chrX	21474603	intergenic	not near genes	chrX	21474796	intergenic	not near genes	chrX_6_21470001	chrX_21470001	KT6_1-HE
3111	chrX	22522626	22522657	chrX	22525447	22525478	NOF	10	2821	3.0	1.5	2.2	3.1	2852	chrX	22522626	intron	CG17600 +	chrX	22524052	intron	CG17600 +	chrX	22525478	intron	CG17600 +	chrX_10_22520001	chrX_22520001	KT6_1-HE
3119	chrX	22697496	22697507	chrX	22701794	22701804	Juan	12	4298	11.0	9.0	10.0	1.1	4308	chrX	22697496	intron	CR44997 +	chrX	22699650	intron	CR44997 +	chrX	22701804	intron	CR44997 +	chrX_12_22695001	chrX_22695001	KT6_1-HE
3120	chrX	22697508	22697523	chrX	22701790	22701821	Juan	15	4297	8.0	9.0	8.5	1.6	4313	chrX	22697508	intron	CR44997 +	chrX	22699664	intron	CR44997 +	chrX	22701821	intron	CR44997 +	chrX_15_22695001	chrX_22695001	KT6_1-HE
3122	chrX	22771504	22771538	chrX	22774796	22774830	297	11	3289	2.5	3.0	2.8	2.9	3326	chrX	22771504	intron	CR44997 +	chrX	22773167	intron	CR44997 +	chrX	22774830	intron	CR44997 +	chrX_11_22770001	chrX_22770001	KT6_1-HE
3125	chrX	22811992	22812005	chrX	22816766	22816779	F-element	8	4774	14.0	7.5	10.8	0.7	4787	chrX	22811992	intergenic	CG12446 -	chrX	22814386	intergenic	not near genes	chrX	22816779	intergenic	not near genes	chrX_8_22810001	chrX_22810001	KT6_1-HE
3129	chrX	22987106	22987133	chrX	22989766	22989793	Burdock	4	2660	1.5	0.5	1.0	2.0	2687	chrX	22987106	intron,intron	stnA -,stnB -	chrX	22988450	intron,intron	stnA -,stnB -	chrX	22989793	intron,intron	stnA -,stnB -	chrX_4_22985001	chrX_22985001	KT6_1-HE
3131	chrX	22996313	22996337	chrX	23003547	23003571	roo	7	7234	1.0	3.0	2.0	2.3	7258	chrX	22996313	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003571	intron,intron	stnA -,stnB -	chrX_7_22995001	chrX_22995001	KT6_1-HE
3132	chrX	23036385	23036406	chrX	23037787	23037808	pogo	6	1402	2.0	1.5	1.8	2.1	1423	chrX	23036385	intron	CG12061 +	chrX	23037096	intron	CG12061 +	chrX	23037808	intron	CG12061 +	chrX_6_23035001	chrX_23035001	KT6_1-HE