SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47457	47489	chr2L	52563	52595	jockey	18	5106	9.5	8.5	9.0	1.8	5138	chr2L	47457	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52595	intron	Cda5 -	chr2L_18_50001	chr2L_50001	KT1_1-HE
9	chr2L	347886	347913	chr2L	355387	355414	blood	14	7501	2.5	2.5	2.5	4.0	7528	chr2L	347886	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355414	3` UTR	Plc21C +	chr2L_14_350001	chr2L_350001	KT1_1-HE
16	chr2L	686915	686952	chr2L	695956	695993	roo	8	9041	1.0	1.0	1.0	4.0	9078	chr2L	686915	intron	ds -	chr2L	691454	intron	ds -	chr2L	695993	intron	ds -	chr2L_8_690001	chr2L_690001	KT1_1-HE
19	chr2L	770462	770486	chr2L	772244	772268	Bari1	7	1782	7.0	3.0	5.0	1.2	1806	chr2L	770462	intergenic	not near genes	chr2L	771365	intergenic	not near genes	chr2L	772268	intergenic	CR44614 +	chr2L_7_770001	chr2L_770001	KT1_1-HE
25	chr2L	976896	976909	chr2L	984521	984546	roo	7	7635	3.0	5.5	4.2	1.3	7650	chr2L	976896	intergenic	not near genes	chr2L	980721	intergenic	not near genes	chr2L	984546	intergenic	not near genes	chr2L_7_980001	chr2L_980001	KT1_1-HE
29	chr2L	1220126	1220158	chr2L	1227593	1227625	blood	9	7467	3.0	2.0	2.5	2.6	7499	chr2L	1220126	intron	CG42329 +	chr2L	1223876	intron	CG42329 +	chr2L	1227625	intron	CG42329 +	chr2L_9_1220001	chr2L_1220001	KT1_1-HE
33	chr2L	1301753	1301785	chr2L	1302291	1302325	gypsy	5	540	0.0	2.5	1.2	2.3	572	chr2L	1301753	intergenic	not near genes	chr2L	1302039	intergenic	not near genes	chr2L	1302325	intergenic	not near genes	chr2L_5_1300001	chr2L_1300001	KT1_1-HE
39	chr2L	1570682	1570722	chr2L	1573555	1573595	F-element	9	2873	8.0	6.0	7.0	1.1	2913	chr2L	1570682	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573595	intron	haf +	chr2L_9_1570001	chr2L_1570001	KT1_1-HE
43	chr2L	1678977	1679008	chr2L	1686443	1686474	blood	10	7466	5.5	9.0	7.2	1.2	7497	chr2L	1678977	intron	chinmo +	chr2L	1682726	intron	chinmo +	chr2L	1686474	intron	chinmo +	chr2L_10_1680001	chr2L_1680001	KT1_1-HE
44	chr2L	1711353	1711387	chr2L	1711678	1711712	mdg3	7	325	4.5	4.0	4.2	1.3	359	chr2L	1711353	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_7_1710001	chr2L_1710001	KT1_1-HE
47	chr2L	2100388	2100408	chr2L	2109540	2109558	roo	5	9151	4.5	4.0	4.2	1.0	9170	chr2L	2100388	intron	dpr3 -	chr2L	2104973	intron	dpr3 -	chr2L	2109558	intron	dpr3 -	chr2L_5_2100001	chr2L_2100001	KT1_1-HE
52	chr2L	2294046	2294071	chr2L	2299244	2299246	copia	9	5200	1.0	8.0	4.5	1.6	5200	chr2L	2294046	intergenic	not near genes	chr2L	2296646	intergenic	not near genes	chr2L	2299246	intergenic	not near genes	chr2L_9_2295001	chr2L_2295001	KT1_1-HE
61	chr2L	2661197	2661229	chr2L	2663034	2663053	I-element	9	1833	4.5	3.5	4.0	1.8	1856	chr2L	2661197	intergenic	not near genes	chr2L	2662125	intergenic	not near genes	chr2L	2663053	intergenic	not near genes	chr2L_9_2660001	chr2L_2660001	KT1_1-HE
65	chr2L	2933302	2933326	chr2L	2935480	2935496	pogo	10	2176	8.5	6.5	7.5	1.2	2194	chr2L	2933302	intron	lilli +	chr2L	2934399	intron	lilli +	chr2L	2935496	intron	lilli +	chr2L_10_2930001	chr2L_2930001	KT1_1-HE
72	chr2L	3251493	3251526	chr2L	3259059	3259092	springer	18	7565	3.5	4.0	3.8	3.8	7599	chr2L	3251493	intergenic	not near genes	chr2L	3255292	intergenic	not near genes	chr2L	3259092	intergenic	not near genes	chr2L_18_3255001	chr2L_3255001	KT1_1-HE
77	chr2L	3388600	3388630	chr2L	3388842	3388872	pogo	18	242	4.5	3.5	4.0	3.6	272	chr2L	3388600	intergenic	CG42460 -	chr2L	3388736	intergenic	CG42460 -	chr2L	3388872	intergenic	CG42460 -,CR44791 +	chr2L_18_3385001	chr2L_3385001	KT1_1-HE
87	chr2L	3649785	3649820	chr2L	3654989	3655024	copia	9	5204	1.5	3.5	2.5	2.6	5239	chr2L	3649785	intron	for -	chr2L	3652404	intron	for -	chr2L	3655024	intron	for -	chr2L_9_3650001	chr2L_3650001	KT1_1-HE
103	chr2L	4066034	4066062	chr2L	4068860	4068888	Juan	7	2826	7.0	4.0	5.5	1.1	2854	chr2L	4066034	intron	ed +	chr2L	4067461	intron	ed +	chr2L	4068888	intron	ed +	chr2L_7_4065001	chr2L_4065001	KT1_1-HE
115	chr2L	4601701	4601735	chr2L	4609143	4609177	mdg1	15	7441	3.0	4.5	3.8	3.1	7476	chr2L	4601701	intron	dp -	chr2L	4605439	intron	dp -	chr2L	4609177	intron	dp -	chr2L_15_4605001	chr2L_4605001	KT1_1-HE
143	chr2L	5827713	5827741	chr2L	5836722	5836750	roo	21	9009	3.0	4.5	3.8	4.4	9037	chr2L	5827713	intron	TrissinR +	chr2L	5832232	intron	TrissinR +	chr2L	5836750	intron	TrissinR +	chr2L_21_5830001	chr2L_5830001	KT1_1-HE
178	chr2L	6876774	6876807	chr2L	6882964	6882997	diver	9	6191	2.0	3.5	2.8	2.4	6223	chr2L	6876774	intron	Nlg2 +	chr2L	6879886	intron	Nlg2 +	chr2L	6882997	intron	Nlg2 +	chr2L_9_6875001	chr2L_6875001	KT1_1-HE
195	chr2L	7343322	7343356	chr2L	7350439	7350473	roo	21	7117	10.0	5.5	7.8	2.4	7151	chr2L	7343322	intron	Wnt6 +	chr2L	7346898	intron	Wnt6 +	chr2L	7350473	intron	Wnt6 +	chr2L_21_7345001	chr2L_7345001	KT1_1-HE
213	chr2L	7959040	7959072	chr2L	7960452	7960484	pogo	4	1412	1.5	0.0	0.8	2.2	1444	chr2L	7959040	intron	Snoo -	chr2L	7959762	intron	Snoo -	chr2L	7960484	intron	Snoo -	chr2L_4_7955001	chr2L_7955001	KT1_1-HE
214	chr2L	7977090	7977113	chr2L	7984067	7984090	297	8	6977	2.5	8.5	5.5	1.2	7000	chr2L	7977090	intron	Snoo -	chr2L	7980590	intron	Snoo -	chr2L	7984090	intron,5` UTR	Snoo -,CG7231 +	chr2L_8_7980001	chr2L_7980001	KT1_1-HE
216	chr2L	8013612	8013631	chr2L	8018817	8018836	copia	7	5205	2.5	0.0	1.2	3.2	5224	chr2L	8013612	intron	Tg +	chr2L	8016224	intron	Tg +	chr2L	8018836	intron	Tg +	chr2L_7_8015001	chr2L_8015001	KT1_1-HE
221	chr2L	8452417	8452454	chr2L	8461589	8461626	roo	16	9172	4.0	4.0	4.0	3.2	9209	chr2L	8452417	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461626	intron	fu12 -	chr2L_16_8455001	chr2L_8455001	KT1_1-HE
231	chr2L	8723112	8723143	chr2L	8731490	8731521	Tirant	20	8377	6.0	3.5	4.8	3.4	8409	chr2L	8723112	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731521	intron	raw -	chr2L_20_8725001	chr2L_8725001	KT1_1-HE
238	chr2L	9000278	9000305	chr2L	9007789	9007816	roo	9	7511	4.0	4.0	4.0	1.8	7538	chr2L	9000278	intergenic	Try29F +	chr2L	9004047	intergenic	not near genes	chr2L	9007816	intergenic	not near genes	chr2L_9_9000001	chr2L_9000001	KT1_1-HE
249	chr2L	9217970	9218002	chr2L	9222758	9222790	Doc	15	4788	7.0	14.0	10.5	1.3	4820	chr2L	9217970	intron	tai +	chr2L	9220380	intron	tai +	chr2L	9222790	intron	tai +	chr2L_15_9220001	chr2L_9220001	KT1_1-HE
262	chr2L	9393496	9393531	chr2L	9396464	9396499	jockey	25	2968	8.5	6.5	7.5	2.9	3003	chr2L	9393496	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396499	intron	Shawl -	chr2L_25_9390001	chr2L_9390001	KT1_1-HE
270	chr2L	9973751	9973759	chr2L	9980850	9980879	HMS-Beagle	5	7111	3.0	4.5	3.8	1.0	7128	chr2L	9973751	intergenic	not near genes	chr2L	9977315	intergenic	not near genes	chr2L	9980879	intergenic	not near genes	chr2L_5_9975001	chr2L_9975001	KT1_1-HE
275	chr2L	10156336	10156354	chr2L	10163790	10163810	blood	7	7466	4.0	4.5	4.2	1.3	7474	chr2L	10156336	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160073	intron	CG44153 -	chr2L	10163810	intron	CG44153 -	chr2L_7_10160001	chr2L_10160001	KT1_1-HE
286	chr2L	10592845	10592875	chr2L	10600508	10600538	opus	15	7663	4.0	4.0	4.0	3.0	7693	chr2L	10592845	intron	Trim9 +	chr2L	10596692	intron	Trim9 +	chr2L	10600538	intron	Trim9 +	chr2L_15_10595001	chr2L_10595001	KT1_1-HE
292	chr2L	10862845	10862876	chr2L	10864453	10864491	Rt1c	12	1612	3.0	3.5	3.2	2.9	1646	chr2L	10862845	3` UTR	CR43807 -	chr2L	10863668	intron	CR43807 -	chr2L	10864491	3` UTR	CR43807 -	chr2L_12_10860001	chr2L_10860001	KT1_1-HE
293	chr2L	10946947	10946970	chr2L	10956163	10956186	roo	5	9216	4.0	5.5	4.8	0.9	9239	chr2L	10946947	intron	dpr2 -	chr2L	10951566	intron	dpr2 -	chr2L	10956186	intron	dpr2 -	chr2L_5_10950001	chr2L_10950001	KT1_1-HE
308	chr2L	11540596	11540614	chr2L	11547999	11548017	Tabor	8	7403	5.0	4.5	4.8	1.4	7421	chr2L	11540596	intergenic	not near genes	chr2L	11544306	intergenic	not near genes	chr2L	11548017	intergenic	not near genes	chr2L_8_11540001	chr2L_11540001	KT1_1-HE
309	chr2L	11563633	11563649	chr2L	11568838	11568854	copia	7	5205	9.5	3.5	6.5	0.9	5221	chr2L	11563633	intergenic	not near genes	chr2L	11566244	intergenic	not near genes	chr2L	11568854	intergenic	not near genes	chr2L_7_11565001	chr2L_11565001	KT1_1-HE
311	chr2L	11614051	11614077	chr2L	11615547	11615552	hopper2	5	1488	2.0	2.5	2.2	1.6	1501	chr2L	11614051	intron	kek2 +	chr2L	11614802	intron	kek2 +	chr2L	11615552	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	KT1_1-HE
313	chr2L	11713504	11713539	chr2L	11720973	11720981	blood	19	7466	5.0	4.5	4.8	3.3	7477	chr2L	11713504	intergenic	not near genes	chr2L	11717242	intergenic	not near genes	chr2L	11720981	intergenic	CR44143 +	chr2L_19_11715001	chr2L_11715001	KT1_1-HE
344	chr2L	12558329	12558350	chr2L	12565459	12565480	HMS-Beagle	4	7130	2.5	9.0	5.8	0.6	7151	chr2L	12558329	intergenic	not near genes	chr2L	12561904	intergenic	not near genes	chr2L	12565480	intergenic	not near genes	chr2L_4_12560001	chr2L_12560001	KT1_1-HE
349	chr2L	12728918	12728946	chr2L	12729161	12729189	pogo	12	243	3.0	7.5	5.2	1.9	271	chr2L	12728918	intron	MRP +	chr2L	12729054	intron	MRP +	chr2L	12729189	exon	MRP +	chr2L_12_12725001	chr2L_12725001	KT1_1-HE
350	chr2L	12731057	12731087	chr2L	12735825	12735855	F-element	13	4768	5.5	3.5	4.5	2.4	4798	chr2L	12731057	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735855	intron	MRP +	chr2L_13_12730001	chr2L_12730001	KT1_1-HE
352	chr2L	12763863	12763873	chr2L	12764064	12764074	BS	8	201	0.5	4.0	2.2	2.5	211	chr2L	12763863	intergenic	not near genes	chr2L	12763968	intergenic	not near genes	chr2L	12764074	intergenic	not near genes	chr2L_8_12760001	chr2L_12760001	KT1_1-HE
354	chr2L	12781802	12781815	chr2L	12789246	12789259	Quasimodo	11	7444	19.5	13.5	16.5	0.6	7457	chr2L	12781802	intergenic	not near genes	chr2L	12785530	intergenic	not near genes	chr2L	12789259	intergenic	not near genes	chr2L_11_12785001	chr2L_12785001	KT1_1-HE
355	chr2L	12791603	12791623	chr2L	12795279	12795299	F-element	14	3676	13.5	11.0	12.2	1.1	3696	chr2L	12791603	intergenic	not near genes	chr2L	12793451	intergenic	not near genes	chr2L	12795299	intergenic	not near genes	chr2L_14_12790001	chr2L_12790001	KT1_1-HE
356	chr2L	12791624	12791633	chr2L	12795278	12795309	F-element	13	3672	12.0	11.0	11.5	1.0	3685	chr2L	12791624	intergenic	not near genes	chr2L	12793466	intergenic	not near genes	chr2L	12795309	intergenic	not near genes	chr2L_13_12790001	chr2L_12790001	KT1_1-HE
357	chr2L	12861694	12861730	chr2L	12863162	12863198	hobo	13	1468	2.5	4.0	3.2	3.1	1504	chr2L	12861694	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863198	intergenic	not near genes	chr2L_13_12860001	chr2L_12860001	KT1_1-HE
358	chr2L	12894019	12894054	chr2L	12895487	12895522	hobo	21	1464	5.5	8.5	7.0	2.6	1503	chr2L	12894019	intergenic	not near genes	chr2L	12894770	intergenic	not near genes	chr2L	12895522	intergenic	not near genes	chr2L_21_12890001	chr2L_12890001	KT1_1-HE
360	chr2L	12933847	12933882	chr2L	12941315	12941350	blood	16	7468	2.5	4.0	3.2	3.8	7503	chr2L	12933847	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941350	intergenic	not near genes	chr2L_16_12935001	chr2L_12935001	KT1_1-HE
361	chr2L	13036243	13036270	chr2L	13036486	13036513	X-element	12	243	4.5	6.5	5.5	1.8	270	chr2L	13036243	intron	CG9932 -	chr2L	13036378	intron	CG9932 -	chr2L	13036513	intron	CG9932 -	chr2L_12_13035001	chr2L_13035001	KT1_1-HE
370	chr2L	13405646	13405683	chr2L	13410444	13410481	Doc	4	4794	2.5	3.5	3.0	1.0	4835	chr2L	13405646	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410481	intron	CG7110 +	chr2L_4_13405001	chr2L_13405001	KT1_1-HE
374	chr2L	13449461	13449491	chr2L	13456898	13456928	Quasimodo	14	7437	4.5	3.5	4.0	2.8	7467	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453194	intron	CG42784 +	chr2L	13456928	intron	CG42784 +	chr2L_14_13450001	chr2L_13450001	KT1_1-HE
376	chr2L	13481448	13481475	chr2L	13482056	13482083	jockey	9	608	8.5	10.0	9.2	0.9	635	chr2L	13481448	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482083	intron	CG42784 +	chr2L_9_13480001	chr2L_13480001	KT1_1-HE
383	chr2L	13761802	13761807	chr2L	13762914	13762919	Doc	4	1112	7.5	5.5	6.5	0.5	1117	chr2L	13761802	intron	TM9SF4 +	chr2L	13762360	intron	TM9SF4 +	chr2L	13762919	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	KT1_1-HE
384	chr2L	13761819	13761836	chr2L	13762908	13762948	Doc	5	1107	4.5	4.5	4.5	0.9	1129	chr2L	13761819	intron	TM9SF4 +	chr2L	13762384	intron	TM9SF4 +	chr2L	13762948	intron	TM9SF4 +	chr2L_5_13760001	chr2L_13760001	KT1_1-HE
387	chr2L	13853092	13853117	chr2L	13862243	13862268	roo	18	9151	5.0	5.0	5.0	3.0	9176	chr2L	13853092	intron	CenG1A +	chr2L	13857680	intron	CenG1A +	chr2L	13862268	intron	CenG1A +	chr2L_18_13855001	chr2L_13855001	KT1_1-HE
412	chr2L	14803878	14803909	chr2L	14809082	14809113	copia	16	5204	6.0	9.5	7.8	1.8	5235	chr2L	14803878	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809113	intergenic	not near genes	chr2L_16_14805001	chr2L_14805001	KT1_1-HE
417	chr2L	14889951	14889987	chr2L	14890377	14890413	jockey	23	425	6.5	4.0	5.2	3.7	462	chr2L	14889951	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890413	intergenic	not near genes	chr2L_23_14890001	chr2L_14890001	KT1_1-HE
420	chr2L	14984385	14984402	chr2L	14991988	14992005	opus	11	7602	3.0	6.5	4.8	1.9	7620	chr2L	14984385	intron	mol -	chr2L	14988195	intron	mol -	chr2L	14992005	intron	mol -	chr2L_11_14985001	chr2L_14985001	KT1_1-HE
436	chr2L	15446051	15446084	chr2L	15453521	15453554	blood	14	7470	3.0	2.5	2.8	3.7	7503	chr2L	15446051	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453554	intergenic	not near genes	chr2L_14_15445001	chr2L_15445001	KT1_1-HE
442	chr2L	15586410	15586441	chr2L	15593463	15593494	297	16	7053	4.0	2.0	3.0	4.0	7084	chr2L	15586410	intergenic	not near genes	chr2L	15589952	intergenic	not near genes	chr2L	15593494	intergenic	not near genes	chr2L_16_15585001	chr2L_15585001	KT1_1-HE
455	chr2L	15956022	15956057	chr2L	15957490	15957525	hobo	17	1468	6.5	4.0	5.2	2.7	1503	chr2L	15956022	intron	beat-Ib -	chr2L	15956774	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_17_15955001	chr2L_15955001	KT1_1-HE
463	chr2L	16141162	16141196	chr2L	16146370	16146404	copia	22	5208	4.5	5.0	4.8	3.8	5242	chr2L	16141162	intergenic	not near genes	chr2L	16143783	intergenic	not near genes	chr2L	16146404	intergenic	not near genes	chr2L_22_16140001	chr2L_16140001	KT1_1-HE
475	chr2L	16511968	16511996	chr2L	16519076	16519111	HMS-Beagle	21	7114	5.5	3.0	4.2	4.0	7143	chr2L	16511968	intron	CG5953 -	chr2L	16515540	intron	CG5953 -	chr2L	16519111	intron	CG5953 -	chr2L_21_16515001	chr2L_16515001	KT1_1-HE
486	chr2L	16958101	16958136	chr2L	16962890	16962925	Doc	26	4788	6.5	6.0	6.2	3.6	4824	chr2L	16958101	intergenic	not near genes	chr2L	16960513	intergenic	not near genes	chr2L	16962925	intergenic	not near genes	chr2L_26_16960001	chr2L_16960001	KT1_1-HE
497	chr2L	17167567	17167591	chr2L	17167809	17167833	pogo	10	242	6.5	3.0	4.8	1.7	266	chr2L	17167567	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167833	intron,intron	CG34106 +,beat-IIIa +	chr2L_10_17165001	chr2L_17165001	KT1_1-HE
499	chr2L	17199159	17199190	chr2L	17200627	17200658	hobo	15	1468	3.0	6.0	4.5	2.7	1499	chr2L	17199159	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200658	intron	beat-IIIc -	chr2L_15_17195001	chr2L_17195001	KT1_1-HE
504	chr2L	17273189	17273224	chr2L	17277973	17278008	F-element	16	4783	6.0	3.5	4.8	2.8	4819	chr2L	17273189	intergenic	not near genes	chr2L	17275598	intergenic	not near genes	chr2L	17278008	intergenic	not near genes	chr2L_16_17275001	chr2L_17275001	KT1_1-HE
509	chr2L	17335547	17335575	chr2L	17336714	17336742	1360	12	1167	5.0	3.5	4.2	2.3	1195	chr2L	17335547	intergenic	not near genes	chr2L	17336144	intergenic	not near genes	chr2L	17336742	intergenic	not near genes	chr2L_12_17335001	chr2L_17335001	KT1_1-HE
514	chr2L	17432018	17432043	chr2L	17432126	17432151	1360	17	108	0.0	1.0	0.5	11.3	133	chr2L	17432018	intron	Dif -	chr2L	17432084	intron	Dif -	chr2L	17432151	intron	Dif -	chr2L_17_17430001	chr2L_17430001	KT1_1-HE
522	chr2L	17687515	17687522	chr2L	17692261	17692268	F-element	4	4746	6.5	5.0	5.8	0.6	4753	chr2L	17687515	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692268	intron	CadN -	chr2L_4_17685001	chr2L_17685001	KT1_1-HE
524	chr2L	17727867	17727882	chr2L	17729335	17729350	hobo	9	1468	6.0	12.5	9.2	0.9	1483	chr2L	17727867	intron	CadN -	chr2L	17728608	intron	CadN -	chr2L	17729350	intron	CadN -	chr2L_9_17725001	chr2L_17725001	KT1_1-HE
528	chr2L	17819919	17819943	chr2L	17825124	17825148	copia	9	5205	5.5	5.5	5.5	1.4	5229	chr2L	17819919	intron	CadN2 -	chr2L	17822534	intron	CadN2 -	chr2L	17825148	intron	CadN2 -	chr2L_9_17820001	chr2L_17820001	KT1_1-HE
535	chr2L	17911957	17911989	chr2L	17914136	17914168	pogo	16	2178	6.0	2.5	4.2	3.1	2211	chr2L	17911957	intergenic	not near genes	chr2L	17913062	intergenic	not near genes	chr2L	17914168	intergenic	CG43271 -	chr2L_16_17910001	chr2L_17910001	KT1_1-HE
536	chr2L	17951942	17951978	chr2L	17953410	17953446	hobo	15	1468	4.0	2.0	3.0	3.8	1504	chr2L	17951942	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953446	intergenic	not near genes	chr2L_15_17950001	chr2L_17950001	KT1_1-HE
537	chr2L	18051873	18051907	chr2L	18061021	18061055	roo	16	9147	7.5	6.5	7.0	2.0	9182	chr2L	18051873	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061055	intron	rdo +	chr2L_16_18055001	chr2L_18055001	KT1_1-HE
550	chr2L	18408043	18408053	chr2L	18412829	18412839	Doc	4	4786	1.0	0.0	0.5	2.7	4796	chr2L	18408043	intergenic	not near genes	chr2L	18410441	intergenic	not near genes	chr2L	18412839	intergenic	not near genes	chr2L_4_18410001	chr2L_18410001	KT1_1-HE
566	chr2L	19147367	19147387	chr2L	19154403	19154423	297	8	7035	11.0	8.0	9.5	0.8	7056	chr2L	19147367	intron	brat +	chr2L	19150895	intron	brat +	chr2L	19154423	intron	brat +	chr2L_8_19150001	chr2L_19150001	KT1_1-HE
571	chr2L	19345013	19345050	chr2L	19357223	19357260	blood	18	12210	3.5	4.0	3.8	3.8	12247	chr2L	19345013	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357260	intron	dnt -	chr2L_18_19350001	chr2L_19350001	KT1_1-HE
583	chr2L	19620095	19620106	chr2L	19621085	19621096	jockey	5	990	11.0	6.5	8.8	0.5	1001	chr2L	19620095	intron	Lar +	chr2L	19620596	intron	Lar +	chr2L	19621096	intron	Lar +	chr2L_5_19620001	chr2L_19620001	KT1_1-HE
584	chr2L	19620108	19620130	chr2L	19621082	19621120	jockey	15	988	5.0	4.5	4.8	2.6	1012	chr2L	19620108	intron	Lar +	chr2L	19620614	intron	Lar +	chr2L	19621120	intron	Lar +	chr2L_15_19620001	chr2L_19620001	KT1_1-HE
585	chr2L	19652567	19652599	chr2L	19674004	19674036	opus	24	21435	8.5	6.5	7.5	2.8	21469	chr2L	19652567	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674036	intron	Lar +	chr2L_24_19660001	chr2L_19660001	KT1_1-HE
586	chr2L	19703535	19703569	chr2L	19712672	19712706	roo	24	9137	9.0	9.5	9.2	2.4	9171	chr2L	19703535	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712706	intron	Lar +	chr2L_24_19705001	chr2L_19705001	KT1_1-HE
587	chr2L	19737366	19737385	chr2L	19740836	19740848	1360	8	3468	2.5	6.0	4.2	1.5	3482	chr2L	19737366	intergenic	Nf-YB +	chr2L	19739107	intergenic	not near genes	chr2L	19740848	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	KT1_1-HE
592	chr2L	20005883	20005902	chr2L	20010960	20010979	flea	4	5077	6.5	7.0	6.8	0.5	5096	chr2L	20005883	intron	CG43861 -	chr2L	20008431	intron	CG43861 -	chr2L	20010979	intron	CG43861 -	chr2L_4_20005001	chr2L_20005001	KT1_1-HE
599	chr2L	20272113	20272143	chr2L	20282825	20282855	copia	14	10712	5.0	7.5	6.2	1.9	10742	chr2L	20272113	intergenic	not near genes	chr2L	20277484	intergenic	not near genes	chr2L	20282855	intergenic	not near genes	chr2L_14_20275001	chr2L_20275001	KT1_1-HE
602	chr2L	20303159	20303193	chr2L	20310628	20310662	blood	14	7469	0.0	6.5	3.2	3.3	7503	chr2L	20303159	intergenic	not near genes	chr2L	20306910	intergenic	not near genes	chr2L	20310662	intergenic	not near genes	chr2L_14_20305001	chr2L_20305001	KT1_1-HE
604	chr2L	20372218	20372256	chr2L	20372469	20372498	pogo	9	249	0.0	10.0	5.0	1.5	280	chr2L	20372218	intergenic	Ugt37a1 -	chr2L	20372358	intergenic	Ugt37a1 -	chr2L	20372498	exon	Ugt37a1 -	chr2L_9_20370001	chr2L_20370001	KT1_1-HE
609	chr2L	20568618	20568640	chr2L	20569078	20569100	X-element	8	459	4.0	2.0	3.0	2.0	482	chr2L	20568618	intron	CR45347 +	chr2L	20568859	intron	CR45347 +	chr2L	20569100	intron	CR45347 +	chr2L_8_20565001	chr2L_20565001	KT1_1-HE
610	chr2L	20576216	20576246	chr2L	20583685	20583714	blood	11	7469	8.5	7.0	7.8	1.2	7498	chr2L	20576216	intergenic	CR45347 +	chr2L	20579965	intergenic	not near genes	chr2L	20583714	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	KT1_1-HE
618	chr2L	20901479	20901487	chr2L	20902644	20902652	1360	4	1165	0.5	0.5	0.5	2.7	1173	chr2L	20901479	intron,intron	CG43739 -,sky -	chr2L	20902066	intron,intron	CG43739 -,sky -	chr2L	20902652	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	KT1_1-HE
620	chr2L	20976642	20976670	chr2L	20981455	20981485	X-element	10	4816	5.0	1.0	3.0	2.5	4843	chr2L	20976642	intron	CG42238 -	chr2L	20979064	intron	CG42238 -	chr2L	20981485	intron	CG42238 -	chr2L_10_20975001	chr2L_20975001	KT1_1-HE
621	chr2L	21020275	21020311	chr2L	21023953	21023989	NOF	7	3678	3.5	4.5	4.0	1.4	3714	chr2L	21020275	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023989	intron	CG42238 -	chr2L_7_21020001	chr2L_21020001	KT1_1-HE
623	chr2L	21041132	21041166	chr2L	21049394	21049428	Tirant	21	8261	6.0	4.0	5.0	3.5	8296	chr2L	21041132	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049428	intron	CG42238 -	chr2L_21_21045001	chr2L_21045001	KT1_1-HE
630	chr2L	21347548	21347568	chr2L	21355021	21355041	blood	10	7473	2.5	1.5	2.0	3.3	7493	chr2L	21347548	intron	Tsp39D +	chr2L	21351294	intron	Tsp39D +	chr2L	21355041	intron	Tsp39D +	chr2L_10_21350001	chr2L_21350001	KT1_1-HE
632	chr2L	21597027	21597061	chr2L	21604772	21604806	roo	10	7745	3.0	3.0	3.0	2.5	7779	chr2L	21597027	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604806	intergenic	not near genes	chr2L_10_21600001	chr2L_21600001	KT1_1-HE
633	chr2L	21653194	21653222	chr2L	21656499	21656527	invader4	9	3305	4.5	2.5	3.5	2.0	3333	chr2L	21653194	intergenic	not near genes	chr2L	21654860	intergenic	not near genes	chr2L	21656527	intergenic	not near genes	chr2L_9_21650001	chr2L_21650001	KT1_1-HE
634	chr2L	21691824	21691858	chr2L	21698295	21698329	Burdock	12	6471	3.0	0.5	1.8	4.3	6505	chr2L	21691824	intron	CG31619 +	chr2L	21695076	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_12_21695001	chr2L_21695001	KT1_1-HE
640	chr2L	21872724	21872739	chr2L	21872983	21872998	INE-1	10	258	10.0	7.5	8.8	1.0	274	chr2L	21872724	intergenic	not near genes	chr2L	21872861	intergenic	not near genes	chr2L	21872998	intergenic	not near genes	chr2L_10_21870001	chr2L_21870001	KT1_1-HE
644	chr2L	21981681	21981714	chr2L	21990847	21990880	roo	13	9166	2.0	7.0	4.5	2.4	9199	chr2L	21981681	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_13_21985001	chr2L_21985001	KT1_1-HE
654	chr2L	22258617	22258646	chr2L	22260742	22260771	G6	9	2125	4.0	3.5	3.8	1.9	2154	chr2L	22258617	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260771	intergenic	not near genes	chr2L_9_22255001	chr2L_22255001	KT1_1-HE
656	chr2L	22548921	22548940	chr2L	22550147	22550166	1360	5	1224	0.0	5.5	2.8	1.3	1245	chr2L	22548921	intergenic	CG17490 +	chr2L	22549544	intergenic	not near genes	chr2L	22550166	intergenic	CG17493 +	chr2L_5_22545001	chr2L_22545001	KT1_1-HE
660	chr2L	22679802	22679815	chr2L	22684575	22684588	F-element	8	4773	4.5	5.5	5.0	1.3	4786	chr2L	22679802	intron	CG40006 -	chr2L	22682195	intron	CG40006 -	chr2L	22684588	intron	CG40006 -	chr2L_8_22680001	chr2L_22680001	KT1_1-HE
663	chr2L	22776418	22776451	chr2L	22778208	22778241	S-element	16	1790	3.5	2.5	3.0	4.0	1823	chr2L	22776418	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778241	intergenic	not near genes	chr2L_16_22775001	chr2L_22775001	KT1_1-HE
664	chr2R	469966	469981	chr2R	473208	473223	F-element	6	3242	2.5	8.0	5.2	1.0	3257	chr2R	469966	intergenic	not near genes	chr2R	471594	intergenic	not near genes	chr2R	473223	intergenic	not near genes	chr2R_6_470001	chr2R_470001	KT1_1-HE
665	chr2R	552759	552783	chr2R	553978	553984	1360	8	1215	3.0	3.0	3.0	2.0	1225	chr2R	552759	intron	CG40378 +	chr2R	553372	intron	CG40378 +	chr2R	553984	intron	CG40378 +	chr2R_8_550001	chr2R_550001	KT1_1-HE
670	chr2R	2498986	2499014	chr2R	2508134	2508162	roo	7	9148	1.0	5.0	3.0	1.8	9176	chr2R	2498986	intron	MFS17 -	chr2R	2503574	intron	MFS17 -	chr2R	2508162	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	KT1_1-HE
674	chr2R	3526647	3526653	chr2R	3531378	3531384	F-element	6	4731	1.5	2.0	1.8	2.1	4737	chr2R	3526647	intergenic	not near genes	chr2R	3529016	intergenic	not near genes	chr2R	3531384	intergenic	not near genes	chr2R_6_3525001	chr2R_3525001	KT1_1-HE
677	chr2R	4160904	4160923	chr2R	4164829	4164848	micropia	4	3925	6.5	5.5	6.0	0.6	3944	chr2R	4160904	intergenic	not near genes	chr2R	4162876	intergenic	not near genes	chr2R	4164848	intergenic	not near genes	chr2R_4_4160001	chr2R_4160001	KT1_1-HE
681	chr2R	4838870	4838906	chr2R	4840394	4840430	transib2	12	1524	5.0	9.0	7.0	1.5	1560	chr2R	4838870	intergenic	not near genes	chr2R	4839650	intergenic	not near genes	chr2R	4840430	intergenic	not near genes	chr2R_12_4835001	chr2R_4835001	KT1_1-HE
689	chr2R	3172438	3172454	chr2R	5255081	5255108	1360	6	2082645	21.5	5.5	13.5	0.4	2082670	chr2R	3172438	intron	CG42596 +	chr2R	4213773	intergenic	not near genes	chr2R	5255108	5` UTR	CR41443 +	chr2R_6_4210001	chr2R_4210001	KT1_1-HE
691	chr2R	5417992	5418024	chr2R	5420625	5420657	Burdock	5	2633	2.0	1.0	1.5	2.0	2665	chr2R	5417992	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420657	intron	laccase2 +	chr2R_5_5415001	chr2R_5415001	KT1_1-HE
695	chr2R	5543201	5543223	chr2R	5547286	5547308	invader1	7	4085	0.0	8.0	4.0	1.4	4107	chr2R	5543201	intron	CG30438 +	chr2R	5545254	intron	CG30438 +	chr2R	5547308	intron	CG30438 +	chr2R_7_5545001	chr2R_5545001	KT1_1-HE
697	chr2R	4284685	4284689	chr2R	5617503	5617507	Cr1a	4	1332818	28.0	22.0	25.0	0.2	1332822	chr2R	4284685	intergenic	not near genes	chr2R	4951096	intron	Ir41a +	chr2R	5617507	intergenic	not near genes	chr2R_4_4950001	chr2R_4950001	KT1_1-HE
706	chr2R	5869277	5869306	chr2R	5874354	5874383	flea	14	5077	5.0	5.5	5.2	2.3	5106	chr2R	5869277	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874383	intergenic	not near genes	chr2R_14_5870001	chr2R_5870001	KT1_1-HE
711	chr2R	5902154	5902186	chr2R	5909714	5909746	17.6	13	7560	4.5	7.0	5.8	1.9	7592	chr2R	5902154	intron	CG43366 +	chr2R	5905950	intron	CG43366 +	chr2R	5909746	intron	CG43366 +	chr2R_13_5905001	chr2R_5905001	KT1_1-HE
719	chr2R	6096712	6096750	chr2R	6101911	6101926	BS	15	5190	3.0	1.0	2.0	5.0	5214	chr2R	6096712	intron	EcR -	chr2R	6099319	intron	EcR -	chr2R	6101926	intron	EcR -	chr2R_15_6095001	chr2R_6095001	KT1_1-HE
727	chr2R	6494526	6494543	chr2R	6499289	6499306	F-element	8	4763	5.0	3.5	4.2	1.5	4780	chr2R	6494526	intergenic	not near genes	chr2R	6496916	intergenic	not near genes	chr2R	6499306	intergenic	not near genes	chr2R_8_6495001	chr2R_6495001	KT1_1-HE
731	chr2R	6579781	6579806	chr2R	6584868	6584893	flea	11	5087	2.5	8.0	5.2	1.8	5112	chr2R	6579781	intron	jing +	chr2R	6582337	intron	jing +	chr2R	6584893	intron	jing +	chr2R_11_6580001	chr2R_6580001	KT1_1-HE
733	chr2R	6622144	6622177	chr2R	6622617	6622650	invader1	8	473	4.0	3.0	3.5	1.8	506	chr2R	6622144	intergenic	not near genes	chr2R	6622397	intergenic	not near genes	chr2R	6622650	intergenic	not near genes	chr2R_8_6620001	chr2R_6620001	KT1_1-HE
735	chr2R	6664184	6664194	chr2R	6665972	6665985	S-element	6	1790	5.5	3.0	4.2	1.2	1801	chr2R	6664184	intron,3` UTR	Adf1 +,CR45128 -	chr2R	6665084	intron	Adf1 +	chr2R	6665985	intron	Adf1 +	chr2R_6_6665001	chr2R_6665001	KT1_1-HE
740	chr2R	6952163	6952185	chr2R	6959744	6959766	opus	6	7580	7.5	3.0	5.2	1.0	7603	chr2R	6952163	intron,intron	mim -,CheB42c -	chr2R	6955964	intron,intron	mim -,CheB42c -	chr2R	6959766	intron,intron	mim -,CheB42c -	chr2R_6_6955001	chr2R_6955001	KT1_1-HE
750	chr2R	7196565	7196602	chr2R	7201341	7201378	F-element	9	4776	2.0	2.5	2.2	2.8	4813	chr2R	7196565	intron	pk +	chr2R	7198972	intron	pk +	chr2R	7201378	intron	pk +	chr2R_9_7195001	chr2R_7195001	KT1_1-HE
751	chr2R	7235818	7235852	chr2R	7240911	7240945	jockey	12	5092	1.5	0.5	1.0	6.0	5127	chr2R	7235818	intergenic	not near genes	chr2R	7238382	intergenic	not near genes	chr2R	7240945	intergenic	not near genes	chr2R_12_7235001	chr2R_7235001	KT1_1-HE
754	chr2R	7434891	7434907	chr2R	7439193	7439209	Juan	4	4302	5.5	8.5	7.0	0.5	4318	chr2R	7434891	intergenic	so +	chr2R	7437050	intergenic	not near genes	chr2R	7439209	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	KT1_1-HE
757	chr2R	7608405	7608432	chr2R	7613609	7613636	I-element	20	5204	6.5	0.5	3.5	4.4	5231	chr2R	7608405	intron	CG1358 -	chr2R	7611020	intron	CG1358 -	chr2R	7613636	intron	CG1358 -	chr2R_20_7610001	chr2R_7610001	KT1_1-HE
761	chr2R	7815676	7815696	chr2R	7822146	7822166	Burdock	6	6469	1.0	2.5	1.8	2.1	6490	chr2R	7815676	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822166	3` UTR	cathD -	chr2R_6_7815001	chr2R_7815001	KT1_1-HE
762	chr2R	7869190	7869215	chr2R	7873977	7874002	Doc	18	4787	13.0	7.0	10.0	1.6	4812	chr2R	7869190	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_18_7870001	chr2R_7870001	KT1_1-HE
767	chr2R	8330859	8330892	chr2R	8331346	8331379	roo	16	487	4.0	4.0	4.0	3.2	520	chr2R	8330859	intron	pdm3 +	chr2R	8331119	intron	pdm3 +	chr2R	8331379	intron	pdm3 +	chr2R_16_8330001	chr2R_8330001	KT1_1-HE
768	chr2R	8398208	8398241	chr2R	8402990	8403023	Doc	7	4779	2.0	2.0	2.0	2.3	4815	chr2R	8398208	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403023	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	KT1_1-HE
776	chr2R	8566031	8566067	chr2R	8566984	8567014	1360	6	949	2.0	0.0	1.0	3.0	983	chr2R	8566031	5` UTR	Cyp6a14 -	chr2R	8566522	5` UTR	Cyp6a14 -	chr2R	8567014	5` UTR	Cyp6a14 -	chr2R_6_8565001	chr2R_8565001	KT1_1-HE
783	chr2R	8722761	8722794	chr2R	8723003	8723036	pogo	12	240	3.5	3.0	3.2	2.9	275	chr2R	8722761	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723036	intron	CG14767 -	chr2R_12_8720001	chr2R_8720001	KT1_1-HE
791	chr2R	9151299	9151329	chr2R	9157770	9157800	Burdock	9	6471	1.5	2.0	1.8	3.2	6501	chr2R	9151299	exon	CG30345 +	chr2R	9154550	intergenic	not near genes	chr2R	9157800	intergenic	CG8008 -	chr2R_9_9150001	chr2R_9150001	KT1_1-HE
792	chr2R	9212693	9212726	chr2R	9213180	9213201	roo	10	486	3.0	2.5	2.8	2.6	508	chr2R	9212693	intergenic	CR45309 +	chr2R	9212947	intergenic	CR45309 +	chr2R	9213201	5` UTR	CR45309 +	chr2R_10_9210001	chr2R_9210001	KT1_1-HE
800	chr2R	9480075	9480110	chr2R	9490607	9490640	roo	9	10532	4.0	5.0	4.5	1.6	10565	chr2R	9480075	intergenic	not near genes	chr2R	9485358	intergenic	not near genes	chr2R	9490640	intergenic	not near genes	chr2R_9_9485001	chr2R_9485001	KT1_1-HE
804	chr2R	9726609	9726640	chr2R	9734162	9734194	17.6	9	7554	7.5	3.5	5.5	1.4	7585	chr2R	9726609	intron	sqa -	chr2R	9730402	intron	sqa -	chr2R	9734194	intron	sqa -	chr2R_9_9730001	chr2R_9730001	KT1_1-HE
810	chr2R	9871039	9871074	chr2R	9871526	9871561	roo	10	485	3.0	4.0	3.5	2.2	522	chr2R	9871039	intron	cbx -	chr2R	9871300	intron	cbx -	chr2R	9871561	intron,5` UTR	cbx -,CG18446 +	chr2R_10_9870001	chr2R_9870001	KT1_1-HE
812	chr2R	9945429	9945468	chr2R	9945626	9945665	BS	12	194	4.0	5.0	4.5	2.2	236	chr2R	9945429	intron	Mef2 -	chr2R	9945547	intron	Mef2 -	chr2R	9945665	intron	Mef2 -	chr2R_12_9945001	chr2R_9945001	KT1_1-HE
817	chr2R	10005846	10005879	chr2R	10007012	10007045	1360	12	1166	3.0	2.0	2.5	3.4	1199	chr2R	10005846	intron	Pka-R2 -	chr2R	10006446	intron	Pka-R2 -	chr2R	10007045	intron	Pka-R2 -	chr2R_12_10005001	chr2R_10005001	KT1_1-HE
822	chr2R	10176877	10176909	chr2R	10186045	10186077	roo	20	9168	8.0	6.0	7.0	2.5	9200	chr2R	10176877	intron	KCNQ -	chr2R	10181477	intron	KCNQ -	chr2R	10186077	intron	KCNQ -	chr2R_20_10180001	chr2R_10180001	KT1_1-HE
834	chr2R	10585576	10585586	chr2R	10594160	10594170	Tirant	6	8584	5.0	4.5	4.8	1.0	8594	chr2R	10585576	intron	psq +	chr2R	10589873	intron	psq +	chr2R	10594170	intron	psq +	chr2R_6_10585001	chr2R_10585001	KT1_1-HE
836	chr2R	10622351	10622384	chr2R	10637117	10637146	mdg1	8	14766	2.5	3.5	3.0	2.0	14795	chr2R	10622351	intron	CG11883 +	chr2R	10629748	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_8_10625001	chr2R_10625001	KT1_1-HE
845	chr2R	10948024	10948045	chr2R	10955576	10955595	17.6	5	7552	1.5	3.0	2.2	1.6	7571	chr2R	10948024	intergenic	not near genes	chr2R	10951810	intergenic	not near genes	chr2R	10955595	intergenic	not near genes	chr2R_5_10950001	chr2R_10950001	KT1_1-HE
846	chr2R	10979661	10979675	chr2R	10980132	10980146	297	5	471	2.0	2.0	2.0	1.7	485	chr2R	10979661	intergenic	not near genes	chr2R	10979904	intergenic	not near genes	chr2R	10980146	intergenic	not near genes	chr2R_5_10975001	chr2R_10975001	KT1_1-HE
848	chr2R	11009815	11009848	chr2R	11018990	11019020	roo	15	9174	4.0	6.0	5.0	2.5	9205	chr2R	11009815	intron	luna -	chr2R	11014418	intron	luna -	chr2R	11019020	intron	luna -	chr2R_15_11010001	chr2R_11010001	KT1_1-HE
849	chr2R	11019877	11019912	chr2R	11024944	11024979	jockey	9	5067	4.0	5.0	4.5	1.6	5102	chr2R	11019877	intron	luna -	chr2R	11022428	intron	luna -	chr2R	11024979	intron	luna -	chr2R_9_11020001	chr2R_11020001	KT1_1-HE
860	chr2R	11207812	11207847	chr2R	11208006	11208041	BS	18	194	11.0	7.0	9.0	1.8	229	chr2R	11207812	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208041	intron	shn +	chr2R_18_11205001	chr2R_11205001	KT1_1-HE
863	chr2R	11297617	11297651	chr2R	11301939	11301973	flea	9	4322	4.5	4.5	4.5	1.6	4356	chr2R	11297617	intergenic	CG42336 -	chr2R	11299795	intergenic	not near genes	chr2R	11301973	5` UTR	CG7741 +	chr2R_9_11295001	chr2R_11295001	KT1_1-HE
865	chr2R	11415516	11415540	chr2R	11418666	11418688	opus	7	3149	3.5	5.5	4.5	1.3	3172	chr2R	11415516	intron	Drip -	chr2R	11417102	intron	Drip -	chr2R	11418688	intron	Drip -	chr2R_7_11415001	chr2R_11415001	KT1_1-HE
867	chr2R	11472652	11472677	chr2R	11473850	11473875	pogo	7	1198	4.0	0.5	2.2	2.2	1223	chr2R	11472652	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_7_11470001	chr2R_11470001	KT1_1-HE
892	chr2R	12501691	12501716	chr2R	12503854	12503879	Rt1c	7	2161	3.5	4.5	4.0	1.4	2188	chr2R	12501691	intron	fdl -	chr2R	12502785	intron	fdl -	chr2R	12503879	intron	fdl -	chr2R_7_12500001	chr2R_12500001	KT1_1-HE
898	chr2R	12707519	12707547	chr2R	12715886	12715914	roo	9	8367	5.5	1.5	3.5	2.0	8395	chr2R	12707519	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715914	intron	CG42663 +	chr2R_9_12710001	chr2R_12710001	KT1_1-HE
902	chr2R	12789291	12789326	chr2R	12797655	12797690	roo	12	8361	2.5	3.5	3.0	3.0	8399	chr2R	12789291	intron,3` UTR	sca +,CR45137 -	chr2R	12793490	intron,intron	sca +,CR45137 -	chr2R	12797690	intron,3` UTR	sca +,CR45137 -	chr2R_12_12790001	chr2R_12790001	KT1_1-HE
903	chr2R	12819451	12819479	chr2R	12824521	12824549	jockey	11	5070	4.5	9.5	7.0	1.4	5098	chr2R	12819451	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824549	intergenic	not near genes	chr2R_11_12820001	chr2R_12820001	KT1_1-HE
913	chr2R	13136844	13136866	chr2R	13141643	13141665	Doc	7	4799	5.0	5.0	5.0	1.2	4821	chr2R	13136844	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141665	intron	Cap-G +	chr2R_7_13135001	chr2R_13135001	KT1_1-HE
919	chr2R	13580496	13580528	chr2R	13580847	13580879	jockey	6	351	1.0	1.5	1.2	2.7	383	chr2R	13580496	3` UTR	CG6191 -	chr2R	13580688	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580879	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_6_13580001	chr2R_13580001	KT1_1-HE
927	chr2R	13905619	13905633	chr2R	13907602	13907616	Rt1a	4	1983	0.0	7.0	3.5	0.9	1997	chr2R	13905619	intron	shot -	chr2R	13906618	intron	shot -	chr2R	13907616	intron	shot -	chr2R_4_13905001	chr2R_13905001	KT1_1-HE
937	chr2R	14394229	14394246	chr2R	14399019	14399036	Doc	5	4790	1.0	1.5	1.2	2.3	4807	chr2R	14394229	intergenic	not near genes	chr2R	14396632	intergenic	not near genes	chr2R	14399036	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	KT1_1-HE
940	chr2R	14467304	14467324	chr2R	14476463	14476483	roo	7	9159	3.0	2.5	2.8	1.8	9179	chr2R	14467304	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476483	5` UTR	CR44462 +	chr2R_7_14470001	chr2R_14470001	KT1_1-HE
941	chr2R	14497385	14497419	chr2R	14498552	14498586	1360	22	1167	4.5	7.0	5.8	3.2	1201	chr2R	14497385	3` UTR	Cpsf160 -	chr2R	14497986	intron	Cpsf160 -	chr2R	14498586	3` UTR	Cpsf160 -	chr2R_22_14495001	chr2R_14495001	KT1_1-HE
960	chr2R	14889211	14889230	chr2R	14897820	14897839	Max-element	10	8609	6.5	1.0	3.8	2.1	8628	chr2R	14889211	intergenic	Cyp6a8 -	chr2R	14893525	intergenic	not near genes	chr2R	14897839	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	KT1_1-HE
966	chr2R	15004726	15004763	chr2R	15005056	15005097	jockey	9	329	1.5	1.5	1.5	3.6	371	chr2R	15004726	intergenic	not near genes	chr2R	15004912	intergenic	not near genes	chr2R	15005097	intergenic	not near genes	chr2R_9_15000001	chr2R_15000001	KT1_1-HE
967	chr2R	15015454	15015471	chr2R	15022879	15022896	mdg1	5	7425	8.5	1.0	4.8	0.9	7442	chr2R	15015454	intron	hbs +	chr2R	15019175	intron	hbs +	chr2R	15022896	intron	hbs +	chr2R_5_15015001	chr2R_15015001	KT1_1-HE
968	chr2R	15084976	15084998	chr2R	15092026	15092043	297	12	7050	4.5	4.5	4.5	2.2	7067	chr2R	15084976	intergenic	not near genes	chr2R	15088510	intergenic	not near genes	chr2R	15092043	5` UTR	CR44457 +	chr2R_12_15085001	chr2R_15085001	KT1_1-HE
969	chr2R	15119318	15119351	chr2R	15127800	15127833	Tirant	14	8482	7.5	8.5	8.0	1.6	8515	chr2R	15119318	intron	chn +	chr2R	15123576	intron	chn +	chr2R	15127833	intron	chn +	chr2R_14_15120001	chr2R_15120001	KT1_1-HE
1010	chr2R	17236506	17236541	chr2R	17241710	17241746	copia	10	5204	1.0	3.5	2.2	3.1	5240	chr2R	17236506	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241746	intron	mbl +	chr2R_10_17235001	chr2R_17235001	KT1_1-HE
1016	chr2R	17485912	17485941	chr2R	17490675	17490675	F-element	5	4757	3.0	0.0	1.5	2.0	4763	chr2R	17485912	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488294	intron	NT5E-2 +	chr2R	17490675	intron	NT5E-2 +	chr2R_5_17485001	chr2R_17485001	KT1_1-HE
1021	chr2R	17782360	17782389	chr2R	17783564	17783593	pogo	8	1204	5.5	3.0	4.2	1.5	1233	chr2R	17782360	intergenic	CG33981 -,fab1 -	chr2R	17782976	intergenic	not near genes	chr2R	17783593	intergenic	mir-31a -	chr2R_8_17780001	chr2R_17780001	KT1_1-HE
1022	chr2R	17784028	17784057	chr2R	17784268	17784299	pogo	8	241	5.5	5.5	5.5	1.2	271	chr2R	17784028	intergenic	mir-31a -	chr2R	17784164	intergenic	mir-31a -	chr2R	17784299	intergenic	mir-31a -	chr2R_8_17780001	chr2R_17780001	KT1_1-HE
1027	chr2R	18045667	18045690	chr2R	18046020	18046043	jockey	8	353	6.5	0.0	3.2	1.9	376	chr2R	18045667	intergenic	not near genes	chr2R	18045855	intergenic	not near genes	chr2R	18046043	intergenic	CG5767 -	chr2R_8_18045001	chr2R_18045001	KT1_1-HE
1031	chr2R	18111692	18111716	chr2R	18115561	18115585	F-element	14	3869	5.0	7.5	6.2	1.9	3893	chr2R	18111692	intergenic	not near genes	chr2R	18113638	intergenic	not near genes	chr2R	18115585	intergenic	not near genes	chr2R_14_18110001	chr2R_18110001	KT1_1-HE
1038	chr2R	18358390	18358419	chr2R	18372603	18372632	roo	13	14213	4.0	5.0	4.5	2.4	14242	chr2R	18358390	intergenic	not near genes	chr2R	18365511	intergenic	not near genes	chr2R	18372632	intergenic	not near genes	chr2R_13_18365001	chr2R_18365001	KT1_1-HE
1044	chr2R	18575813	18575827	chr2R	18581984	18582013	3S18	6	6181	5.0	2.5	3.8	1.2	6200	chr2R	18575813	intron	GEFmeso -	chr2R	18578913	intron	GEFmeso -	chr2R	18582013	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	KT1_1-HE
1045	chr2R	18590865	18590897	chr2R	18600018	18600050	roo	10	9153	2.5	5.0	3.8	2.1	9185	chr2R	18590865	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600050	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	KT1_1-HE
1074	chr2R	19776593	19776627	chr2R	19779917	19779951	jockey	6	3324	1.0	1.5	1.2	2.7	3358	chr2R	19776593	intergenic	not near genes	chr2R	19778272	intergenic	not near genes	chr2R	19779951	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	KT1_1-HE
1076	chr2R	19914846	19914875	chr2R	19922259	19922288	mdg1	8	7413	4.5	5.5	5.0	1.3	7442	chr2R	19914846	intergenic	not near genes	chr2R	19918567	intergenic	not near genes	chr2R	19922288	intergenic	not near genes	chr2R_8_19915001	chr2R_19915001	KT1_1-HE
1078	chr2R	19957440	19957461	chr2R	19962631	19962664	copia	8	5202	5.5	5.5	5.5	1.2	5224	chr2R	19957440	intergenic	CG44623 +	chr2R	19960052	intergenic	not near genes	chr2R	19962664	intergenic	not near genes	chr2R_8_19960001	chr2R_19960001	KT1_1-HE
1080	chr2R	20069236	20069255	chr2R	20071876	20071894	opus	4	2639	1.5	3.0	2.2	1.2	2658	chr2R	20069236	intergenic	not near genes	chr2R	20070565	intergenic	not near genes	chr2R	20071894	intergenic	not near genes	chr2R_4_20070001	chr2R_20070001	KT1_1-HE
1093	chr2R	20739458	20739478	chr2R	20744226	20744247	F-element	11	4769	2.5	13.0	7.8	1.2	4789	chr2R	20739458	intron	dpr +	chr2R	20741852	intron	dpr +	chr2R	20744247	intron	dpr +	chr2R_11_20740001	chr2R_20740001	KT1_1-HE
1096	chr2R	20783319	20783331	chr2R	20788092	20788104	F-element	7	4773	4.0	10.0	7.0	0.9	4785	chr2R	20783319	intergenic	not near genes	chr2R	20785712	intergenic	not near genes	chr2R	20788104	intergenic	CG43666 -	chr2R_7_20785001	chr2R_20785001	KT1_1-HE
1116	chr2R	21738289	21738311	chr2R	21747436	21747472	roo	9	9155	2.0	2.5	2.2	2.8	9183	chr2R	21738289	intergenic	not near genes	chr2R	21742880	intergenic	not near genes	chr2R	21747472	intergenic	not near genes	chr2R_9_21740001	chr2R_21740001	KT1_1-HE
1117	chr2R	21753081	21753114	chr2R	21753567	21753600	roo	16	486	7.0	4.0	5.5	2.5	519	chr2R	21753081	intergenic	not near genes	chr2R	21753340	intergenic	not near genes	chr2R	21753600	intergenic	not near genes	chr2R_16_21750001	chr2R_21750001	KT1_1-HE
1121	chr2R	21809522	21809553	chr2R	21817763	21817794	roo	18	8240	6.0	4.0	5.0	3.0	8272	chr2R	21809522	intergenic	not near genes	chr2R	21813658	intergenic	not near genes	chr2R	21817794	intergenic	not near genes	chr2R_18_21810001	chr2R_21810001	KT1_1-HE
1142	chr2R	22349692	22349722	chr2R	22351477	22351507	jockey	14	1785	3.5	6.5	5.0	2.3	1815	chr2R	22349692	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351507	intron	Liprin-gamma -	chr2R_14_22350001	chr2R_22350001	KT1_1-HE
1143	chr2R	22360379	22360396	chr2R	22360813	22360830	jockey	8	434	6.5	2.5	4.5	1.5	451	chr2R	22360379	intron	Liprin-gamma -	chr2R	22360604	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_8_22360001	chr2R_22360001	KT1_1-HE
1146	chr2R	22465316	22465348	chr2R	22465510	22465548	BS	11	196	0.0	7.0	3.5	2.4	232	chr2R	22465316	intron	CG10384 +	chr2R	22465432	intron	CG10384 +	chr2R	22465548	intron	CG10384 +	chr2R_11_22465001	chr2R_22465001	KT1_1-HE
1147	chr2R	22525760	22525783	chr2R	22529305	22529332	jockey	6	3553	1.5	3.5	2.5	1.7	3572	chr2R	22525760	intron	px -	chr2R	22527546	intron	px -	chr2R	22529332	intron	px -	chr2R_6_22525001	chr2R_22525001	KT1_1-HE
1153	chr2R	22729460	22729468	chr2R	22729669	22729677	INE-1	6	209	4.5	1.5	3.0	1.5	217	chr2R	22729460	intron	jbug -	chr2R	22729568	intron	jbug -	chr2R	22729677	intron	jbug -	chr2R_6_22725001	chr2R_22725001	KT1_1-HE
1154	chr2R	22774971	22774995	chr2R	22775391	22775415	jockey	10	420	7.5	8.5	8.0	1.1	444	chr2R	22774971	intron	CG42260 -	chr2R	22775193	intron	CG42260 -	chr2R	22775415	intron	CG42260 -	chr2R_10_22775001	chr2R_22775001	KT1_1-HE
1155	chr2R	22774996	22775000	chr2R	22775384	22775420	jockey	5	414	6.0	7.0	6.5	0.7	424	chr2R	22774996	intron	CG42260 -	chr2R	22775208	intron	CG42260 -	chr2R	22775420	intron	CG42260 -	chr2R_5_22775001	chr2R_22775001	KT1_1-HE
1159	chr2R	22843023	22843053	chr2R	22844986	22845016	flea	12	1963	4.0	2.0	3.0	3.0	1993	chr2R	22843023	intergenic	CG9826 +	chr2R	22844020	intergenic	not near genes	chr2R	22845016	intergenic	not near genes	chr2R_12_22840001	chr2R_22840001	KT1_1-HE
1176	chr2R	23402615	23402640	chr2R	23407692	23407717	flea	7	5077	3.0	9.0	6.0	1.0	5102	chr2R	23402615	intergenic	CG3520 -	chr2R	23405166	intergenic	not near genes	chr2R	23407717	intergenic	not near genes	chr2R_7_23405001	chr2R_23405001	KT1_1-HE
1180	chr2R	23529572	23529606	chr2R	23537149	23537166	412	8	7574	4.5	2.0	3.2	1.9	7594	chr2R	23529572	intron	bw -	chr2R	23533369	intron	bw -	chr2R	23537166	exon	bw -	chr2R_8_23530001	chr2R_23530001	KT1_1-HE
1185	chr2R	23914311	23914330	chr2R	23921936	23921955	412	8	7624	2.0	1.0	1.5	3.2	7644	chr2R	23914311	exon	kcc +	chr2R	23918133	intron	kcc +	chr2R	23921955	intron	kcc +	chr2R_8_23915001	chr2R_23915001	KT1_1-HE
1187	chr2R	24147072	24147094	chr2R	24154647	24154671	412	6	7577	5.0	3.0	4.0	1.2	7599	chr2R	24147072	intron	Dat +	chr2R	24150872	intron	Dat +	chr2R	24154671	intron	Dat +	chr2R_6_24150001	chr2R_24150001	KT1_1-HE
1189	chr2R	24177234	24177264	chr2R	24184720	24184750	412	11	7486	1.5	5.0	3.2	2.6	7516	chr2R	24177234	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184750	3` UTR	Nop60B +	chr2R_11_24180001	chr2R_24180001	KT1_1-HE
1201	chr2R	24727887	24727916	chr2R	24735394	24735425	mdg1	6	7509	3.0	4.5	3.8	1.2	7538	chr2R	24727887	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735425	intron	Mid1 -	chr2R_6_24730001	chr2R_24730001	KT1_1-HE
1209	chr2R	25141647	25141682	chr2R	25159338	25159373	roo	15	17689	2.5	5.0	3.8	3.1	17726	chr2R	25141647	intergenic	not near genes	chr2R	25150510	intergenic	not near genes	chr2R	25159373	intergenic	not near genes	chr2R_15_25150001	chr2R_25150001	KT1_1-HE
1213	chr3L	110208	110241	chr3L	119376	119409	roo	7	9168	3.5	1.0	2.2	2.2	9201	chr3L	110208	intergenic	not near genes	chr3L	114808	intergenic	not near genes	chr3L	119409	intergenic	not near genes	chr3L_7_110001	chr3L_110001	KT1_1-HE
1217	chr3L	402687	402718	chr3L	409741	409772	297	18	7053	5.0	8.5	6.8	2.3	7085	chr3L	402687	intergenic	not near genes	chr3L	406230	intergenic	not near genes	chr3L	409772	intergenic	not near genes	chr3L_18_405001	chr3L_405001	KT1_1-HE
1234	chr3L	789920	789923	chr3L	790399	790402	roo	5	479	7.5	0.0	3.8	1.0	482	chr3L	789920	intergenic	not near genes	chr3L	790161	intergenic	not near genes	chr3L	790402	intergenic	not near genes	chr3L_5_790001	chr3L_790001	KT1_1-HE
1235	chr3L	858000	858030	chr3L	866482	866499	Tirant	10	8479	2.5	4.0	3.2	2.4	8499	chr3L	858000	intergenic	not near genes	chr3L	862250	intergenic	not near genes	chr3L	866499	5` UTR	CG12502 +	chr3L_10_860001	chr3L_860001	KT1_1-HE
1236	chr3L	925184	925209	chr3L	932611	932636	mdg1	8	7425	1.5	3.0	2.2	2.5	7452	chr3L	925184	intron	Glut1 +	chr3L	928910	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_8_925001	chr3L_925001	KT1_1-HE
1237	chr3L	939770	939801	chr3L	940892	940922	jockey	5	1122	5.5	5.0	5.2	0.8	1152	chr3L	939770	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_5_940001	chr3L_940001	KT1_1-HE
1242	chr3L	1154131	1154160	chr3L	1163282	1163311	roo	11	9151	1.5	6.0	3.8	2.3	9180	chr3L	1154131	intron	bab2 -	chr3L	1158721	intron	bab2 -	chr3L	1163311	intron	bab2 -	chr3L_11_1155001	chr3L_1155001	KT1_1-HE
1245	chr3L	1219593	1219616	chr3L	1227327	1227350	412	8	7734	3.0	4.0	3.5	1.8	7757	chr3L	1219593	intron	mwh +	chr3L	1223472	intron	mwh +	chr3L	1227350	intron	mwh +	chr3L_8_1220001	chr3L_1220001	KT1_1-HE
1258	chr3L	1505998	1506033	chr3L	1513596	1513631	17.6	18	7598	3.5	5.5	4.5	3.3	7633	chr3L	1505998	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513631	intron,intron	Psa +,cue -	chr3L_18_1505001	chr3L_1505001	KT1_1-HE
1262	chr3L	1740851	1740865	chr3L	1741097	1741111	pogo	10	245	4.0	1.0	2.5	2.9	260	chr3L	1740851	intron	Gk +	chr3L	1740981	intron	Gk +	chr3L	1741111	intron	Gk +	chr3L_10_1740001	chr3L_1740001	KT1_1-HE
1284	chr3L	2447511	2447535	chr3L	2456668	2456692	roo	7	9157	4.0	7.5	5.8	1.0	9181	chr3L	2447511	intron	CG45186 +	chr3L	2452102	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	KT1_1-HE
1298	chr3L	2927840	2927872	chr3L	2936117	2936150	Tirant	21	8277	6.0	6.5	6.2	2.9	8310	chr3L	2927840	intron	Shab +	chr3L	2931995	intron	Shab +	chr3L	2936150	intron	Shab +	chr3L_21_2930001	chr3L_2930001	KT1_1-HE
1301	chr3L	3061281	3061316	chr3L	3069865	3069900	Tirant	18	8581	5.5	6.5	6.0	2.6	8619	chr3L	3061281	intron	CG32486 -	chr3L	3065590	intron	CG32486 -	chr3L	3069900	intron	CG32486 -	chr3L_18_3065001	chr3L_3065001	KT1_1-HE
1306	chr3L	3281443	3281472	chr3L	3281935	3281969	Doc	19	496	5.5	9.5	7.5	2.2	526	chr3L	3281443	intron	CG12017 +	chr3L	3281706	intron	CG12017 +	chr3L	3281969	intron	CG12017 +	chr3L_19_3280001	chr3L_3280001	KT1_1-HE
1313	chr3L	3475075	3475110	chr3L	3475520	3475555	jockey	9	445	2.5	6.0	4.2	1.7	480	chr3L	3475075	intron	CG42324 +	chr3L	3475315	intron	CG42324 +	chr3L	3475555	intron	CG42324 +	chr3L_9_3475001	chr3L_3475001	KT1_1-HE
1318	chr3L	3601301	3601327	chr3L	3606613	3606639	copia	9	5312	4.5	5.0	4.8	1.6	5338	chr3L	3601301	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606639	intron	Eip63E +	chr3L_9_3600001	chr3L_3600001	KT1_1-HE
1324	chr3L	3833738	3833768	chr3L	3833980	3834010	pogo	15	242	6.5	1.5	4.0	3.0	272	chr3L	3833738	intron	enc +	chr3L	3833874	intron	enc +	chr3L	3834010	intron	enc +	chr3L_15_3830001	chr3L_3830001	KT1_1-HE
1333	chr3L	4328738	4328765	chr3L	4336237	4336264	412	19	7499	5.0	6.0	5.5	2.9	7526	chr3L	4328738	intron	Cip4 -	chr3L	4332501	intron	Cip4 -	chr3L	4336264	intron	Cip4 -	chr3L_19_4330001	chr3L_4330001	KT1_1-HE
1347	chr3L	4901126	4901150	chr3L	4907317	4907341	diver	7	6190	2.0	0.5	1.2	3.2	6215	chr3L	4901126	intergenic	CG13704 +	chr3L	4904234	intergenic	not near genes	chr3L	4907341	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	KT1_1-HE
1354	chr3L	5034162	5034191	chr3L	5043315	5043344	roo	12	9153	8.0	4.0	6.0	1.7	9182	chr3L	5034162	intron	Con -	chr3L	5038753	intron	Con -	chr3L	5043344	intron	Con -	chr3L_12_5035001	chr3L_5035001	KT1_1-HE
1355	chr3L	5045453	5045472	chr3L	5050235	5050254	Doc	9	4782	8.0	3.0	5.5	1.4	4801	chr3L	5045453	intron	Con -	chr3L	5047854	intron	Con -	chr3L	5050254	intron	Con -	chr3L_9_5045001	chr3L_5045001	KT1_1-HE
1377	chr3L	5537720	5537753	chr3L	5538063	5538096	jockey	6	343	1.5	3.5	2.5	1.7	376	chr3L	5537720	intergenic	not near genes	chr3L	5537908	intergenic	not near genes	chr3L	5538096	intergenic	CG10625 -	chr3L_6_5535001	chr3L_5535001	KT1_1-HE
1383	chr3L	5910031	5910063	chr3L	5910273	5910305	pogo	11	242	6.5	0.0	3.2	2.6	274	chr3L	5910031	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910305	intron	CG13288 +	chr3L_11_5910001	chr3L_5910001	KT1_1-HE
1384	chr3L	5926320	5926337	chr3L	5926511	5926528	BS	5	191	7.0	4.5	5.8	0.7	208	chr3L	5926320	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926528	intron	Vap-33B +	chr3L_5_5925001	chr3L_5925001	KT1_1-HE
1385	chr3L	6001678	6001711	chr3L	6004379	6004412	jockey	14	2700	4.5	5.5	5.0	2.3	2734	chr3L	6001678	intron	PVRAP +	chr3L	6003045	intron	PVRAP +	chr3L	6004412	intron	PVRAP +	chr3L_14_6000001	chr3L_6000001	KT1_1-HE
1386	chr3L	6040366	6040389	chr3L	6042723	6042746	Doc	9	2357	4.5	4.5	4.5	1.6	2380	chr3L	6040366	intergenic	Jon65Aiv +	chr3L	6041556	intergenic	not near genes	chr3L	6042746	intergenic	not near genes	chr3L_9_6040001	chr3L_6040001	KT1_1-HE
1393	chr3L	6220916	6220939	chr3L	6230069	6230092	roo	7	9153	4.5	5.5	5.0	1.2	9176	chr3L	6220916	5` UTR	pncr008:3L +	chr3L	6225504	intergenic	not near genes	chr3L	6230092	intergenic	not near genes	chr3L_7_6225001	chr3L_6225001	KT1_1-HE
1396	chr3L	6335008	6335041	chr3L	6335482	6335515	297	15	474	6.5	7.0	6.8	1.9	507	chr3L	6335008	intron	CG13300 -	chr3L	6335262	intron	CG13300 -	chr3L	6335515	intron	CG13300 -	chr3L_15_6335001	chr3L_6335001	KT1_1-HE
1403	chr3L	6781123	6781136	chr3L	6783137	6783150	Doc	5	2014	5.5	0.0	2.8	1.3	2027	chr3L	6781123	intergenic	not near genes	chr3L	6782136	intergenic	not near genes	chr3L	6783150	intergenic	not near genes	chr3L_5_6780001	chr3L_6780001	KT1_1-HE
1407	chr3L	6855919	6855956	chr3L	6860703	6860740	Doc	13	4783	5.5	5.0	5.2	2.1	4821	chr3L	6855919	intergenic	not near genes	chr3L	6858330	intergenic	not near genes	chr3L	6860740	intergenic	not near genes	chr3L_13_6855001	chr3L_6855001	KT1_1-HE
1408	chr3L	6887513	6887551	chr3L	6895009	6895044	roo	6	7494	0.0	5.5	2.8	1.6	7531	chr3L	6887513	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895044	intergenic	not near genes	chr3L_6_6890001	chr3L_6890001	KT1_1-HE
1415	chr3L	6994885	6994917	chr3L	6995497	6995529	BS	11	612	2.5	4.0	3.2	2.6	644	chr3L	6994885	intergenic	bin +	chr3L	6995207	intergenic	not near genes	chr3L	6995529	intergenic	not near genes	chr3L_11_6995001	chr3L_6995001	KT1_1-HE
1421	chr3L	7129956	7129983	chr3L	7130149	7130176	BS	6	193	2.5	4.0	3.2	1.4	220	chr3L	7129956	intergenic	CG15829 +	chr3L	7130066	intergenic	CG15829 +	chr3L	7130176	intergenic	not near genes	chr3L_6_7130001	chr3L_7130001	KT1_1-HE
1433	chr3L	7377314	7377344	chr3L	7380419	7380450	297	8	3106	4.5	2.0	3.2	1.9	3136	chr3L	7377314	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380450	intron	SMSr -	chr3L_8_7375001	chr3L_7375001	KT1_1-HE
1437	chr3L	7498756	7498778	chr3L	7503534	7503556	F-element	12	4778	12.0	7.0	9.5	1.1	4800	chr3L	7498756	5` UTR	CG8539 -	chr3L	7501156	intergenic	not near genes	chr3L	7503556	intergenic	not near genes	chr3L_12_7500001	chr3L_7500001	KT1_1-HE
1442	chr3L	7793710	7793745	chr3L	7800763	7800798	297	12	7052	3.5	4.5	4.0	2.4	7088	chr3L	7793710	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800798	intron	CG32369 -	chr3L_12_7795001	chr3L_7795001	KT1_1-HE
1447	chr3L	7916831	7916861	chr3L	7926003	7926033	roo	7	9172	1.0	2.5	1.8	2.5	9202	chr3L	7916831	3` UTR	syd -	chr3L	7921432	intron	syd -	chr3L	7926033	3` UTR	syd -	chr3L_7_7920001	chr3L_7920001	KT1_1-HE
1448	chr3L	7985362	7985396	chr3L	7987691	7987725	NOF	9	2329	4.5	3.0	3.8	1.9	2363	chr3L	7985362	intron	nmo +	chr3L	7986544	intron	nmo +	chr3L	7987725	intron	nmo +	chr3L_9_7985001	chr3L_7985001	KT1_1-HE
1461	chr3L	8481794	8481802	chr3L	8490954	8490962	roo	5	9160	4.0	1.0	2.5	1.4	9168	chr3L	8481794	intron	CG43163 -	chr3L	8486378	intron	CG43163 -	chr3L	8490962	intron	CG43163 -	chr3L_5_8485001	chr3L_8485001	KT1_1-HE
1462	chr3L	8498299	8498327	chr3L	8505767	8505795	blood	4	7468	0.5	4.5	2.5	1.1	7496	chr3L	8498299	intron	CG43163 -	chr3L	8502047	intron	CG43163 -	chr3L	8505795	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	KT1_1-HE
1469	chr3L	8791273	8791290	chr3L	8796694	8796711	I-element	12	5421	7.5	0.0	3.8	2.5	5438	chr3L	8791273	exon	Fhos +	chr3L	8793992	intron	Fhos +	chr3L	8796711	intron	Fhos +	chr3L_12_8790001	chr3L_8790001	KT1_1-HE
1480	chr3L	9076928	9076956	chr3L	9084489	9084517	412	19	7561	5.0	7.0	6.0	2.7	7589	chr3L	9076928	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084517	exon	Tequila +	chr3L_19_9080001	chr3L_9080001	KT1_1-HE
1483	chr3L	9130555	9130582	chr3L	9134317	9134328	412	5	3756	6.0	2.0	4.0	1.0	3773	chr3L	9130555	intergenic	bol -	chr3L	9132442	intergenic	not near genes	chr3L	9134328	intergenic	Dhpr +	chr3L_5_9130001	chr3L_9130001	KT1_1-HE
1484	chr3L	9164699	9164701	chr3L	9166167	9166169	hobo	4	1468	9.5	5.5	7.5	0.5	1470	chr3L	9164699	intron	Rdl -	chr3L	9165434	intron	Rdl -	chr3L	9166169	intron	Rdl -	chr3L_4_9165001	chr3L_9165001	KT1_1-HE
1485	chr3L	9164705	9164729	chr3L	9166162	9166197	hobo	16	1466	6.0	5.5	5.8	2.4	1492	chr3L	9164705	intron	Rdl -	chr3L	9165451	intron	Rdl -	chr3L	9166197	intron	Rdl -	chr3L_16_9165001	chr3L_9165001	KT1_1-HE
1487	chr3L	9219243	9219252	chr3L	9219916	9219925	jockey	5	671	13.0	5.5	9.2	0.5	682	chr3L	9219243	intergenic	not near genes	chr3L	9219584	intergenic	not near genes	chr3L	9219925	intergenic	not near genes	chr3L_5_9215001	chr3L_9215001	KT1_1-HE
1488	chr3L	9219255	9219275	chr3L	9219915	9219948	jockey	14	668	6.5	5.5	6.0	2.0	693	chr3L	9219255	intergenic	not near genes	chr3L	9219602	intergenic	not near genes	chr3L	9219948	intergenic	not near genes	chr3L_14_9215001	chr3L_9215001	KT1_1-HE
1490	chr3L	9270631	9270646	chr3L	9278383	9278393	roo	6	7751	6.5	4.5	5.5	0.9	7762	chr3L	9270631	intron	GluRIB +	chr3L	9274512	intron	GluRIB +	chr3L	9278393	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	KT1_1-HE
1495	chr3L	9443510	9443535	chr3L	9445302	9445327	S-element	4	1792	5.5	2.5	4.0	0.8	1817	chr3L	9443510	intron	CG33926 +	chr3L	9444418	intron	CG33926 +	chr3L	9445327	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	KT1_1-HE
1496	chr3L	9501700	9501734	chr3L	9502187	9502221	roo	7	487	1.5	0.0	0.8	3.9	521	chr3L	9501700	intron	path -	chr3L	9501960	intron	path -	chr3L	9502221	intron	path -	chr3L_7_9500001	chr3L_9500001	KT1_1-HE
1497	chr3L	9533758	9533773	chr3L	9541312	9541334	412	5	7559	7.0	5.5	6.2	0.7	7576	chr3L	9533758	intergenic	not near genes	chr3L	9537546	intergenic	not near genes	chr3L	9541334	intergenic	not near genes	chr3L_5_9535001	chr3L_9535001	KT1_1-HE
1498	chr3L	9571901	9571935	chr3L	9572250	9572284	jockey	14	349	6.0	6.0	6.0	2.0	383	chr3L	9571901	intron	CG42673 +	chr3L	9572092	intron	CG42673 +	chr3L	9572284	intron	CG42673 +	chr3L_14_9570001	chr3L_9570001	KT1_1-HE
1499	chr3L	9575906	9575942	chr3L	9580987	9581023	jockey	19	5080	5.0	6.5	5.8	2.8	5117	chr3L	9575906	intron	CG42673 +	chr3L	9578464	intron	CG42673 +	chr3L	9581023	intron	CG42673 +	chr3L_19_9575001	chr3L_9575001	KT1_1-HE
1512	chr3L	9929670	9929700	chr3L	9938453	9938483	roo	19	8782	2.5	11.0	6.8	2.4	8813	chr3L	9929670	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938483	intron	CG34356 +	chr3L_19_9930001	chr3L_9930001	KT1_1-HE
1527	chr3L	10414940	10414979	chr3L	10417313	10417352	Doc	10	2372	0.5	4.0	2.2	3.1	2412	chr3L	10414940	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417352	intergenic	not near genes	chr3L_10_10415001	chr3L_10415001	KT1_1-HE
1552	chr3L	11087057	11087087	chr3L	11088846	11088877	S-element	15	1790	0.0	0.5	0.2	12.5	1820	chr3L	11087057	intron	JIL-1 -	chr3L	11087967	intron	JIL-1 -	chr3L	11088877	intron	JIL-1 -	chr3L_15_11085001	chr3L_11085001	KT1_1-HE
1554	chr3L	11105294	11105323	chr3L	11107006	11107035	X-element	4	1712	4.0	3.0	3.5	0.9	1741	chr3L	11105294	intergenic	not near genes	chr3L	11106164	intergenic	not near genes	chr3L	11107035	exon	CG32073 -	chr3L_4_11105001	chr3L_11105001	KT1_1-HE
1556	chr3L	11277457	11277484	chr3L	11278453	11278480	Rt1a	5	996	2.5	1.5	2.0	1.7	1023	chr3L	11277457	intergenic	not near genes	chr3L	11277968	intergenic	not near genes	chr3L	11278480	intergenic	not near genes	chr3L_5_11275001	chr3L_11275001	KT1_1-HE
1567	chr3L	11723083	11723116	chr3L	11727879	11727912	Doc	11	4796	5.0	6.0	5.5	1.7	4829	chr3L	11723083	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727912	3` UTR	Bmcp +	chr3L_11_11725001	chr3L_11725001	KT1_1-HE
1577	chr3L	11864551	11864585	chr3L	11865847	11865881	pogo	27	1295	5.5	5.5	5.5	4.2	1330	chr3L	11864551	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865881	intron	CG44837 -	chr3L_27_11865001	chr3L_11865001	KT1_1-HE
1614	chr3L	12874930	12874960	chr3L	12877223	12877253	jockey	12	2293	4.0	5.0	4.5	2.2	2323	chr3L	12874930	intergenic	not near genes	chr3L	12876092	intergenic	not near genes	chr3L	12877253	intergenic	not near genes	chr3L_12_12875001	chr3L_12875001	KT1_1-HE
1616	chr3L	12919271	12919309	chr3L	12924745	12924777	Rt1c	18	5473	3.5	4.5	4.0	3.6	5506	chr3L	12919271	intergenic	not near genes	chr3L	12922024	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_18_12920001	chr3L_12920001	KT1_1-HE
1621	chr3L	12957785	12957819	chr3L	12962269	12962302	copia	11	4483	3.0	5.5	4.2	2.1	4517	chr3L	12957785	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962302	intergenic	not near genes	chr3L_11_12960001	chr3L_12960001	KT1_1-HE
1638	chr3L	13525155	13525189	chr3L	13532952	13532986	roo	13	7796	4.5	8.0	6.2	1.8	7831	chr3L	13525155	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532986	intergenic	not near genes	chr3L_13_13525001	chr3L_13525001	KT1_1-HE
1643	chr3L	13804547	13804577	chr3L	13822834	13822864	roo	16	18287	8.0	8.0	8.0	1.8	18317	chr3L	13804547	intergenic	not near genes	chr3L	13813706	intergenic	not near genes	chr3L	13822864	intergenic	not near genes	chr3L_16_13810001	chr3L_13810001	KT1_1-HE
1659	chr3L	14245565	14245588	chr3L	14245660	14245683	1360	10	95	6.0	2.5	4.2	1.9	118	chr3L	14245565	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245683	3` UTR	CR44561 -	chr3L_10_14245001	chr3L_14245001	KT1_1-HE
1660	chr3L	14267370	14267398	chr3L	14271811	14271839	F-element	10	4439	4.5	3.5	4.0	2.0	4469	chr3L	14267370	intergenic	not near genes	chr3L	14269604	intergenic	not near genes	chr3L	14271839	intergenic	not near genes	chr3L_10_14265001	chr3L_14265001	KT1_1-HE
1662	chr3L	14295979	14296015	chr3L	14296466	14296502	roo	20	485	7.0	7.5	7.2	2.4	523	chr3L	14295979	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296502	intron	fz +	chr3L_20_14295001	chr3L_14295001	KT1_1-HE
1663	chr3L	14312022	14312058	chr3L	14316835	14316862	X-element	17	4810	4.5	8.0	6.2	2.4	4840	chr3L	14312022	exon	fz +	chr3L	14314442	intron	fz +	chr3L	14316862	intron	fz +	chr3L_17_14310001	chr3L_14310001	KT1_1-HE
1668	chr3L	14468446	14468478	chr3L	14473653	14473685	copia	18	5207	9.0	8.5	8.8	1.8	5239	chr3L	14468446	intron	bbg -	chr3L	14471066	intron	bbg -	chr3L	14473685	intron	bbg -	chr3L_18_14470001	chr3L_14470001	KT1_1-HE
1676	chr3L	14721179	14721210	chr3L	14723023	14723054	Rt1c	11	1842	6.0	5.5	5.8	1.6	1875	chr3L	14721179	intron	ome +	chr3L	14722116	intron	ome +	chr3L	14723054	intron	ome +	chr3L_11_14720001	chr3L_14720001	KT1_1-HE
1677	chr3L	14725592	14725630	chr3L	14728588	14728625	Doc	6	2996	0.0	4.5	2.2	1.9	3033	chr3L	14725592	intron	ome +	chr3L	14727108	intron	ome +	chr3L	14728625	intron	ome +	chr3L_6_14725001	chr3L_14725001	KT1_1-HE
1686	chr3L	14954380	14954399	chr3L	14956035	14956054	transib2	6	1655	2.5	10.5	6.5	0.8	1674	chr3L	14954380	intergenic	not near genes	chr3L	14955217	intergenic	not near genes	chr3L	14956054	intergenic	not near genes	chr3L_6_14955001	chr3L_14955001	KT1_1-HE
1689	chr3L	15085046	15085081	chr3L	15086213	15086248	1360	13	1165	0.5	1.0	0.8	7.2	1202	chr3L	15085046	intron	cp309 -	chr3L	15085647	intron	cp309 -	chr3L	15086248	intron	cp309 -	chr3L_13_15085001	chr3L_15085001	KT1_1-HE
1696	chr3L	15295765	15295783	chr3L	15298609	15298627	gypsy5	14	2844	2.5	8.5	5.5	2.2	2862	chr3L	15295765	intergenic	not near genes	chr3L	15297196	intergenic	not near genes	chr3L	15298627	intergenic	Best4 +	chr3L_14_15295001	chr3L_15295001	KT1_1-HE
1699	chr3L	15423758	15423784	chr3L	15426603	15426629	opus	14	2845	7.5	5.0	6.2	1.9	2871	chr3L	15423758	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426629	intergenic	not near genes	chr3L_14_15425001	chr3L_15425001	KT1_1-HE
1704	chr3L	15554921	15554947	chr3L	15556709	15556735	S-element	9	1788	8.0	3.0	5.5	1.4	1814	chr3L	15554921	intron	AGO2 +	chr3L	15555828	intron	AGO2 +	chr3L	15556735	intron	AGO2 +	chr3L_9_15555001	chr3L_15555001	KT1_1-HE
1714	chr3L	15899226	15899257	chr3L	15899794	15899825	jockey	6	567	4.0	7.0	5.5	0.9	599	chr3L	15899226	intergenic	pHCl -	chr3L	15899526	intergenic	pHCl -	chr3L	15899825	intergenic	sff -	chr3L_6_15895001	chr3L_15895001	KT1_1-HE
1715	chr3L	15929193	15929230	chr3L	15938341	15938378	roo	11	9148	3.5	3.0	3.2	2.6	9185	chr3L	15929193	intron	Pka-C3 -	chr3L	15933786	intron	Pka-C3 -	chr3L	15938378	intron	Pka-C3 -	chr3L_11_15930001	chr3L_15930001	KT1_1-HE
1721	chr3L	16184104	16184140	chr3L	16188924	16188960	X-element	11	4820	2.5	2.0	2.2	3.4	4856	chr3L	16184104	intergenic	not near genes	chr3L	16186532	intergenic	not near genes	chr3L	16188960	intergenic	not near genes	chr3L_11_16185001	chr3L_16185001	KT1_1-HE
1731	chr3L	16443846	16443878	chr3L	16446187	16446219	Doc	17	2340	4.0	6.5	5.2	2.7	2373	chr3L	16443846	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446219	intron,intron	CG33158 +,dsx-c73A -	chr3L_17_16445001	chr3L_16445001	KT1_1-HE
1734	chr3L	16493973	16494012	chr3L	16494491	16494530	jockey	35	518	11.0	9.0	10.0	3.2	557	chr3L	16493973	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494530	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_35_16490001	chr3L_16490001	KT1_1-HE
1738	chr3L	16616511	16616543	chr3L	16621838	16621872	297	8	5329	2.0	1.0	1.5	3.2	5361	chr3L	16616511	3` UTR	Abl -	chr3L	16619192	3` UTR	Abl -	chr3L	16621872	3` UTR	Abl -	chr3L_8_16615001	chr3L_16615001	KT1_1-HE
1741	chr3L	16684017	16684049	chr3L	16689239	16689271	copia	17	5222	8.0	10.5	9.2	1.7	5254	chr3L	16684017	intron,intron	Lasp -,CG43954 -	chr3L	16686644	intron,intron	Lasp -,CG43954 -	chr3L	16689271	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_17_16685001	chr3L_16685001	KT1_1-HE
1752	chr3L	16945724	16945761	chr3L	16954878	16954915	roo	30	9153	4.0	6.5	5.2	4.8	9191	chr3L	16945724	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954915	5` UTR	Nc73EF +	chr3L_30_16950001	chr3L_16950001	KT1_1-HE
1757	chr3L	17034933	17034969	chr3L	17035122	17035158	G2	4	189	0.0	3.0	1.5	1.6	225	chr3L	17034933	intergenic	not near genes	chr3L	17035046	intergenic	not near genes	chr3L	17035158	intergenic	not near genes	chr3L_4_17035001	chr3L_17035001	KT1_1-HE
1758	chr3L	17085001	17085036	chr3L	17094151	17094186	roo	19	9149	9.0	12.0	10.5	1.7	9185	chr3L	17085001	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094186	intron	Rbp6 -	chr3L_19_17085001	chr3L_17085001	KT1_1-HE
1771	chr3L	17516999	17517010	chr3L	17524558	17524569	412	4	7559	2.5	2.5	2.5	1.1	7570	chr3L	17516999	intron	CG7564 +	chr3L	17520784	intron	CG7564 +	chr3L	17524569	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	KT1_1-HE
1774	chr3L	17730858	17730882	chr3L	17738189	17738213	mdg1	6	7331	1.0	7.5	4.2	1.2	7355	chr3L	17730858	intron	Ccn +	chr3L	17734536	intron	Ccn +	chr3L	17738213	intron	Ccn +	chr3L_6_17730001	chr3L_17730001	KT1_1-HE
1777	chr3L	17799809	17799839	chr3L	17801597	17801627	S-element	13	1788	1.5	0.5	1.0	6.5	1818	chr3L	17799809	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801627	intron	NUCB1 -	chr3L_13_17800001	chr3L_17800001	KT1_1-HE
1783	chr3L	18047709	18047741	chr3L	18056767	18056799	roo	7	9058	1.0	1.5	1.2	3.2	9090	chr3L	18047709	intron	Eip75B -	chr3L	18052254	intron	Eip75B -	chr3L	18056799	intron	Eip75B -	chr3L_7_18050001	chr3L_18050001	KT1_1-HE
1812	chr3L	18506132	18506141	chr3L	18509596	18509605	F-element	7	3464	11.5	3.5	7.5	0.8	3473	chr3L	18506132	intergenic	not near genes	chr3L	18507868	intergenic	not near genes	chr3L	18509605	intergenic	not near genes	chr3L_7_18505001	chr3L_18505001	KT1_1-HE
1813	chr3L	18506144	18506163	chr3L	18509591	18509611	F-element	7	3458	6.0	3.0	4.5	1.3	3467	chr3L	18506144	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509611	intergenic	not near genes	chr3L_7_18505001	chr3L_18505001	KT1_1-HE
1815	chr3L	18514904	18514943	chr3L	18520096	18520135	BS	10	5192	4.0	3.5	3.8	2.1	5231	chr3L	18514904	intergenic	not near genes	chr3L	18517520	intergenic	not near genes	chr3L	18520135	intergenic	not near genes	chr3L_10_18515001	chr3L_18515001	KT1_1-HE
1818	chr3L	18528632	18528637	chr3L	18537794	18537799	roo	4	9162	10.5	0.5	5.5	0.6	9167	chr3L	18528632	intergenic	not near genes	chr3L	18533216	intergenic	not near genes	chr3L	18537799	intergenic	not near genes	chr3L_4_18530001	chr3L_18530001	KT1_1-HE
1822	chr3L	18593952	18593982	chr3L	18595933	18595963	Doc	8	1981	1.5	1.5	1.5	3.2	2011	chr3L	18593952	intergenic	term -	chr3L	18594958	intergenic	not near genes	chr3L	18595963	intergenic	CR45389 +	chr3L_8_18590001	chr3L_18590001	KT1_1-HE
1826	chr3L	18710757	18710792	chr3L	18718710	18718745	Stalker2	17	7953	5.5	6.5	6.0	2.4	7988	chr3L	18710757	intergenic	not near genes	chr3L	18714751	intergenic	not near genes	chr3L	18718745	intergenic	not near genes	chr3L_17_18710001	chr3L_18710001	KT1_1-HE
1828	chr3L	18772409	18772437	chr3L	18781091	18781119	roo	20	8682	6.5	5.5	6.0	2.9	8710	chr3L	18772409	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781119	intron	ftz-f1 -	chr3L_20_18775001	chr3L_18775001	KT1_1-HE
1831	chr3L	18833786	18833813	chr3L	18834949	18834978	1360	11	1165	2.0	4.0	3.0	2.8	1192	chr3L	18833786	intron	Indy -	chr3L	18834382	intron	Indy -	chr3L	18834978	intron	Indy -	chr3L_11_18830001	chr3L_18830001	KT1_1-HE
1840	chr3L	19008842	19008872	chr3L	19009182	19009211	jockey	15	338	3.0	6.0	4.5	2.7	369	chr3L	19008842	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009211	intron	nkd -	chr3L_15_19005001	chr3L_19005001	KT1_1-HE
1846	chr3L	19115633	19115666	chr3L	19115813	19115845	BS	9	180	5.5	3.0	4.2	1.7	212	chr3L	19115633	intron	CG14082 -	chr3L	19115739	intron	CG14082 -	chr3L	19115845	intron	CG14082 -	chr3L_9_19115001	chr3L_19115001	KT1_1-HE
1847	chr3L	19117039	19117074	chr3L	19124487	19124522	mdg1	12	7447	1.5	1.5	1.5	4.8	7483	chr3L	19117039	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_12_19120001	chr3L_19120001	KT1_1-HE
1854	chr3L	19208055	19208089	chr3L	19209430	19209464	Doc	13	1374	4.0	2.0	3.0	3.2	1409	chr3L	19208055	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209464	intron	fz2 -	chr3L_13_19205001	chr3L_19205001	KT1_1-HE
1869	chr3L	19820297	19820318	chr3L	19827847	19827868	412	11	7549	4.5	1.5	3.0	2.8	7571	chr3L	19820297	intron	Deaf1 +	chr3L	19824082	intron	Deaf1 +	chr3L	19827868	intron	Deaf1 +	chr3L_11_19820001	chr3L_19820001	KT1_1-HE
1870	chr3L	19848505	19848535	chr3L	19857696	19857726	roo	5	9191	3.5	2.0	2.8	1.3	9221	chr3L	19848505	intron	Papss +	chr3L	19853116	intron	Papss +	chr3L	19857726	intron	Papss +	chr3L_5_19850001	chr3L_19850001	KT1_1-HE
1871	chr3L	19861820	19861851	chr3L	19863609	19863640	S-element	8	1787	3.0	1.0	2.0	2.7	1820	chr3L	19861820	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863640	intergenic	not near genes	chr3L_8_19860001	chr3L_19860001	KT1_1-HE
1878	chr3L	20113657	20113691	chr3L	20122915	20122949	roo	20	9257	3.0	6.0	4.5	3.6	9292	chr3L	20113657	intergenic	not near genes	chr3L	20118303	intergenic	not near genes	chr3L	20122949	intergenic	not near genes	chr3L_20_20115001	chr3L_20115001	KT1_1-HE
1879	chr3L	20113258	20113283	chr3L	20123329	20123354	roo	11	10071	23.0	17.5	20.2	0.5	10096	chr3L	20113258	intergenic	CG14187 -	chr3L	20118306	intergenic	not near genes	chr3L	20123354	intergenic	not near genes	chr3L_11_20115001	chr3L_20115001	KT1_1-HE
1884	chr3L	20257331	20257363	chr3L	20258452	20258484	pogo	9	1119	3.5	3.0	3.2	2.1	1153	chr3L	20257331	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258484	intron	rdgC +	chr3L_9_20255001	chr3L_20255001	KT1_1-HE
1887	chr3L	20476751	20476786	chr3L	20484351	20484386	springer	13	7600	2.5	2.5	2.5	3.7	7635	chr3L	20476751	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484386	3` UTR	ZnT77C -	chr3L_13_20480001	chr3L_20480001	KT1_1-HE
1893	chr3L	20590062	20590083	chr3L	20590602	20590623	412	16	539	13.5	8.0	10.8	1.4	561	chr3L	20590062	intergenic	not near genes	chr3L	20590342	intergenic	not near genes	chr3L	20590623	intergenic	not near genes	chr3L_16_20590001	chr3L_20590001	KT1_1-HE
1894	chr3L	20590088	20590092	chr3L	20590601	20590632	412	4	533	9.0	7.0	8.0	0.4	544	chr3L	20590088	intergenic	not near genes	chr3L	20590360	intergenic	not near genes	chr3L	20590632	intergenic	not near genes	chr3L_4_20590001	chr3L_20590001	KT1_1-HE
1901	chr3L	20821282	20821310	chr3L	20824894	20824922	NOF	5	3612	3.0	1.5	2.2	1.6	3640	chr3L	20821282	intron	Pka-R1 +	chr3L	20823102	intron	Pka-R1 +	chr3L	20824922	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	KT1_1-HE
1905	chr3L	21014918	21014948	chr3L	21023400	21023430	Tirant	13	8476	4.0	8.5	6.2	1.8	8512	chr3L	21014918	intron	skd -	chr3L	21019174	intron	skd -	chr3L	21023430	intron	skd -	chr3L_13_21015001	chr3L_21015001	KT1_1-HE
1909	chr3L	21151862	21151897	chr3L	21156947	21156982	flea	18	5085	4.5	4.0	4.2	3.5	5120	chr3L	21151862	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21156982	intron	Ac78C -	chr3L_18_21150001	chr3L_21150001	KT1_1-HE
1911	chr3L	21306147	21306178	chr3L	21315307	21315338	roo	10	9160	4.0	5.5	4.8	1.7	9191	chr3L	21306147	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310742	intron	Pc -	chr3L	21315338	3` UTR	Pc -	chr3L_10_21310001	chr3L_21310001	KT1_1-HE
1912	chr3L	21372723	21372752	chr3L	21379232	21379261	McClintock	8	6509	6.0	6.0	6.0	1.1	6538	chr3L	21372723	intergenic	not near genes	chr3L	21375992	intergenic	not near genes	chr3L	21379261	intergenic	not near genes	chr3L_8_21375001	chr3L_21375001	KT1_1-HE
1915	chr3L	21498844	21498870	chr3L	21500481	21500507	1360	10	1636	4.0	7.5	5.8	1.5	1663	chr3L	21498844	intron	Glg1 -	chr3L	21499676	intron	Glg1 -	chr3L	21500507	intron	Glg1 -	chr3L_10_21495001	chr3L_21495001	KT1_1-HE
1917	chr3L	21749313	21749332	chr3L	21754474	21754493	Doc	5	5161	4.5	3.0	3.8	1.0	5180	chr3L	21749313	intron	Syn1 -	chr3L	21751903	intron	Syn1 -	chr3L	21754493	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	KT1_1-HE
1926	chr3L	22099673	22099703	chr3L	22105860	22105890	3S18	13	6186	4.0	5.5	4.8	2.2	6217	chr3L	22099673	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_13_22100001	chr3L_22100001	KT1_1-HE
1943	chr3L	22555768	22555803	chr3L	22563239	22563274	blood	13	7471	6.0	1.5	3.8	2.7	7506	chr3L	22555768	intergenic	not near genes	chr3L	22559521	intergenic	not near genes	chr3L	22563274	intergenic	not near genes	chr3L_13_22555001	chr3L_22555001	KT1_1-HE
1945	chr3L	22577621	22577645	chr3L	22582410	22582434	Doc	10	4787	4.0	4.0	4.0	2.0	4813	chr3L	22577621	intergenic	not near genes	chr3L	22580028	intergenic	not near genes	chr3L	22582434	3` UTR	CG14459 -	chr3L_10_22580001	chr3L_22580001	KT1_1-HE
1948	chr3L	22617187	22617216	chr3L	22624640	22624669	blood	8	7453	4.0	2.0	3.0	2.0	7482	chr3L	22617187	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624669	intron	CG14459 -	chr3L_8_22620001	chr3L_22620001	KT1_1-HE
1950	chr3L	22761382	22761423	chr3L	22766817	22766858	Ivk	17	5434	2.5	3.5	3.0	4.2	5476	chr3L	22761382	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766858	intron	SPoCk +	chr3L_17_22760001	chr3L_22760001	KT1_1-HE
1953	chr3L	22865984	22866012	chr3L	22867118	22867146	Doc	8	1132	2.5	2.5	2.5	2.3	1162	chr3L	22865984	intron	CG33170 +	chr3L	22866565	intron	CG33170 +	chr3L	22867146	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	KT1_1-HE
1957	chr3L	22989863	22989889	chr3L	22996838	22996864	297	5	6975	1.5	3.0	2.2	1.6	7001	chr3L	22989863	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996864	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	KT1_1-HE
1959	chr3L	23042228	23042255	chr3L	23048982	23049009	gypsy6	8	6753	0.0	3.5	1.8	2.9	6781	chr3L	23042228	intergenic	not near genes	chr3L	23045618	intergenic	not near genes	chr3L	23049009	intergenic	not near genes	chr3L_8_23045001	chr3L_23045001	KT1_1-HE
1965	chr3L	24012409	24012439	chr3L	24020751	24020781	roo	6	8338	2.0	2.0	2.0	2.0	8372	chr3L	24012409	intergenic	not near genes	chr3L	24016595	intergenic	not near genes	chr3L	24020781	intergenic	not near genes	chr3L_6_24015001	chr3L_24015001	KT1_1-HE
1966	chr3L	24021283	24021314	chr3L	24022440	24022472	1360	4	1157	2.0	3.5	2.8	1.1	1189	chr3L	24021283	intergenic	not near genes	chr3L	24021878	intergenic	not near genes	chr3L	24022472	intergenic	not near genes	chr3L_4_24020001	chr3L_24020001	KT1_1-HE
1967	chr3L	24168794	24168822	chr3L	24176123	24176151	ZAM	6	7328	2.0	6.0	4.0	1.2	7357	chr3L	24168794	intron	Snap25 +	chr3L	24172472	intron	Snap25 +	chr3L	24176151	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	KT1_1-HE
1970	chr3L	24791895	24791922	chr3L	24796675	24796702	Doc	11	4780	4.5	4.5	4.5	2.0	4807	chr3L	24791895	intergenic	not near genes	chr3L	24794298	intergenic	not near genes	chr3L	24796702	intergenic	not near genes	chr3L_11_24790001	chr3L_24790001	KT1_1-HE
1976	chr3L	25628505	25628528	chr3L	25633269	25633300	F-element	8	4771	2.5	2.5	2.5	2.3	4795	chr3L	25628505	intron	CG41343 -	chr3L	25630902	intron	CG41343 -	chr3L	25633300	intron	CG41343 -	chr3L_8_25630001	chr3L_25630001	KT1_1-HE
1981	chr3L	27356087	27356122	chr3L	27357305	27357340	1360	10	1218	4.5	2.0	3.2	2.4	1253	chr3L	27356087	intron	Dbp80 +	chr3L	27356714	intron	Dbp80 +	chr3L	27357340	intron	Dbp80 +	chr3L_10_27355001	chr3L_27355001	KT1_1-HE
1983	chr3L	27980698	27980722	chr3L	27985494	27985518	Doc	7	4796	2.5	2.0	2.2	2.2	4820	chr3L	27980698	intron	CG17514 -	chr3L	27983108	intron	CG17514 -	chr3L	27985518	intron	CG17514 -	chr3L_7_27980001	chr3L_27980001	KT1_1-HE
1988	chr3R	2465443	2465448	chr3R	4561986	4561992	X-element	4	2096544	3.0	5.5	4.2	0.8	2096549	chr3R	2465443	intergenic	not near genes	chr3R	3513718	intron	Parp -	chr3R	4561992	intergenic	not near genes	chr3R_4_3510001	chr3R_3510001	KT1_1-HE
1994	chr3R	4206071	4206100	chr3R	4211647	4211676	mdg3	9	5576	5.0	2.0	3.5	2.0	5605	chr3R	4206071	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211676	intron	CG14636 -	chr3R_9_4205001	chr3R_4205001	KT1_1-HE
1995	chr3R	4366757	4366790	chr3R	4375140	4375174	roo	11	8384	5.5	3.5	4.5	2.0	8417	chr3R	4366757	3` UTR	CG1090 +	chr3R	4370966	intergenic	not near genes	chr3R	4375174	5` UTR	CR44922 +	chr3R_11_4370001	chr3R_4370001	KT1_1-HE
1997	chr3R	4408412	4408440	chr3R	4412717	4412745	Juan	6	4305	3.0	3.5	3.2	1.4	4333	chr3R	4408412	intron	CG32944 -	chr3R	4410578	intron	CG32944 -	chr3R	4412745	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	KT1_1-HE
1999	chr3R	4538902	4538908	chr3R	4540163	4540169	1360	8	1261	6.5	12.0	9.2	0.8	1267	chr3R	4538902	intron	CG34357 -	chr3R	4539536	intron	CG34357 -	chr3R	4540169	intron	CG34357 -	chr3R_8_4535001	chr3R_4535001	KT1_1-HE
2001	chr3R	4609545	4609581	chr3R	4610710	4610746	1360	13	1164	5.5	3.5	4.5	2.4	1201	chr3R	4609545	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610746	intergenic	not near genes	chr3R_13_4610001	chr3R_4610001	KT1_1-HE
2004	chr3R	4753237	4753267	chr3R	4757541	4757565	F-element	13	4303	5.5	5.0	5.2	2.1	4328	chr3R	4753237	intron,intron	atms +,CG44098 -	chr3R	4755401	intron,intron	atms +,CG44098 -	chr3R	4757565	intron,exon	atms +,CG44098 -	chr3R_13_4755001	chr3R_4755001	KT1_1-HE
2005	chr3R	4759724	4759745	chr3R	4761222	4761243	hopper2	5	1498	5.0	8.5	6.8	0.6	1519	chr3R	4759724	intron,intron	atms +,CG44098 -	chr3R	4760484	intron,intron	atms +,CG44098 -	chr3R	4761243	intron,intron	atms +,CG44098 -	chr3R_5_4760001	chr3R_4760001	KT1_1-HE
2008	chr3R	4887476	4887505	chr3R	4894854	4894867	rover	7	7374	5.0	5.0	5.0	1.2	7391	chr3R	4887476	intergenic	not near genes	chr3R	4891172	intergenic	not near genes	chr3R	4894867	intergenic	not near genes	chr3R_7_4890001	chr3R_4890001	KT1_1-HE
2013	chr3R	5045843	5045874	chr3R	5052946	5052977	HMS-Beagle	12	7103	4.0	0.5	2.2	3.8	7134	chr3R	5045843	intron	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5052977	intergenic	CR45588 -	chr3R_12_5045001	chr3R_5045001	KT1_1-HE
2015	chr3R	5067979	5068013	chr3R	5073497	5073531	mdg3	22	5518	4.5	2.0	3.2	5.2	5552	chr3R	5067979	intergenic	not near genes	chr3R	5070755	intergenic	not near genes	chr3R	5073531	intergenic	not near genes	chr3R_22_5070001	chr3R_5070001	KT1_1-HE
2018	chr3R	5338395	5338432	chr3R	5343573	5343584	Rt1c	25	5177	6.0	8.5	7.2	3.0	5189	chr3R	5338395	intron	mtd -	chr3R	5340990	intron	mtd -	chr3R	5343584	intron	mtd -	chr3R_25_5340001	chr3R_5340001	KT1_1-HE
2028	chr3R	5747010	5747044	chr3R	5753202	5753236	diver	5	6192	1.5	0.5	1.0	2.5	6226	chr3R	5747010	intergenic	Madm +	chr3R	5750123	intergenic	not near genes	chr3R	5753236	intergenic	CG2091 -	chr3R_5_5750001	chr3R_5750001	KT1_1-HE
2030	chr3R	5809111	5809144	chr3R	5809353	5809360	pogo	6	232	3.5	6.5	5.0	1.0	249	chr3R	5809111	3` UTR	CG11000 +	chr3R	5809236	3` UTR	CG11000 +	chr3R	5809360	3` UTR	CG11000 +	chr3R_6_5805001	chr3R_5805001	KT1_1-HE
2031	chr3R	5822381	5822412	chr3R	5823549	5823580	1360	6	1168	2.5	2.0	2.2	1.9	1199	chr3R	5822381	3` UTR	CG2023 -	chr3R	5822980	3` UTR	CG2023 -	chr3R	5823580	3` UTR	CG2023 -	chr3R_6_5820001	chr3R_5820001	KT1_1-HE
2036	chr3R	5927558	5927591	chr3R	5927799	5927820	pogo	11	240	3.0	3.0	3.0	2.8	262	chr3R	5927558	intron	CG34113 -	chr3R	5927689	intron	CG34113 -	chr3R	5927820	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	KT1_1-HE
2039	chr3R	6015965	6015991	chr3R	6024441	6024473	Tirant	14	8481	3.0	2.0	2.5	4.0	8508	chr3R	6015965	intergenic	not near genes	chr3R	6020219	intergenic	not near genes	chr3R	6024473	intergenic	not near genes	chr3R_14_6020001	chr3R_6020001	KT1_1-HE
2040	chr3R	6121166	6121189	chr3R	6121385	6121408	BS	8	218	0.0	4.5	2.2	2.5	242	chr3R	6121166	intergenic	not near genes	chr3R	6121287	intergenic	not near genes	chr3R	6121408	intergenic	not near genes	chr3R_8_6120001	chr3R_6120001	KT1_1-HE
2041	chr3R	6158517	6158533	chr3R	6167101	6167117	Tirant	6	8584	5.0	6.0	5.5	0.9	8600	chr3R	6158517	intergenic	not near genes	chr3R	6162817	intergenic	not near genes	chr3R	6167117	intergenic	CG1077 +	chr3R_6_6160001	chr3R_6160001	KT1_1-HE
2042	chr3R	6158537	6158540	chr3R	6167090	6167124	Tirant	4	8571	3.0	2.0	2.5	1.1	8587	chr3R	6158537	intergenic	not near genes	chr3R	6162830	intergenic	not near genes	chr3R	6167124	intergenic	CG1077 +	chr3R_4_6160001	chr3R_6160001	KT1_1-HE
2043	chr3R	6175171	6175188	chr3R	6182444	6182461	HMS-Beagle2	6	7273	4.0	2.5	3.2	1.4	7290	chr3R	6175171	intergenic	Osi1 +	chr3R	6178816	intron	CR45194 +	chr3R	6182461	intergenic	CR45194 +	chr3R_6_6175001	chr3R_6175001	KT1_1-HE
2050	chr3R	6510022	6510055	chr3R	6515104	6515137	jockey	17	5082	3.0	3.0	3.0	4.2	5115	chr3R	6510022	intergenic	not near genes	chr3R	6512580	intergenic	not near genes	chr3R	6515137	intergenic	not near genes	chr3R_17_6510001	chr3R_6510001	KT1_1-HE
2061	chr3R	6737496	6737525	chr3R	6739284	6739313	Doc	19	1788	6.5	4.0	5.2	3.1	1817	chr3R	6737496	intron	pb -	chr3R	6738404	intron	pb -	chr3R	6739313	intron	pb -	chr3R_19_6735001	chr3R_6735001	KT1_1-HE
2091	chr3R	7694584	7694610	chr3R	7713646	7713672	invader3	13	19062	4.0	2.5	3.2	3.1	19088	chr3R	7694584	3` UTR	Nlg1 +	chr3R	7704128	intergenic	not near genes	chr3R	7713672	intergenic	not near genes	chr3R_13_7700001	chr3R_7700001	KT1_1-HE
2094	chr3R	7729467	7729473	chr3R	7737406	7737412	Stalker2	5	7939	16.5	9.0	12.8	0.4	7945	chr3R	7729467	intergenic	not near genes	chr3R	7733440	intergenic	not near genes	chr3R	7737412	intergenic	not near genes	chr3R_5_7730001	chr3R_7730001	KT1_1-HE
2095	chr3R	7729474	7729497	chr3R	7737402	7737436	Stalker2	17	7938	9.0	8.0	8.5	1.8	7962	chr3R	7729474	intergenic	not near genes	chr3R	7733455	intergenic	not near genes	chr3R	7737436	intergenic	not near genes	chr3R_17_7730001	chr3R_7730001	KT1_1-HE
2099	chr3R	7849649	7849671	chr3R	7850817	7850839	1360	17	1168	3.0	5.5	4.2	3.3	1190	chr3R	7849649	intron	CG34384 +	chr3R	7850244	intron	CG34384 +	chr3R	7850839	intron	CG34384 +	chr3R_17_7850001	chr3R_7850001	KT1_1-HE
2105	chr3R	7973313	7973345	chr3R	7974376	7974410	1360	11	1064	2.5	3.0	2.8	2.9	1097	chr3R	7973313	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974410	3` UTR	CD98hc -	chr3R_11_7970001	chr3R_7970001	KT1_1-HE
2109	chr3R	8090564	8090569	chr3R	8094042	8094047	297	4	3478	4.0	15.0	9.5	0.4	3483	chr3R	8090564	intergenic	CR44330 +	chr3R	8092306	intergenic	not near genes	chr3R	8094047	intergenic	CG7900 +	chr3R_4_8090001	chr3R_8090001	KT1_1-HE
2110	chr3R	8094407	8094441	chr3R	8099713	8099747	Transpac	17	5306	5.0	6.0	5.5	2.6	5340	chr3R	8094407	intron	CG7900 +	chr3R	8097077	intron	CG7900 +	chr3R	8099747	intron	CG7900 +	chr3R_17_8095001	chr3R_8095001	KT1_1-HE
2111	chr3R	8101768	8101793	chr3R	8104853	8104878	G2	8	3083	2.5	8.5	5.5	1.2	3110	chr3R	8101768	exon	CG7900 +	chr3R	8103323	intron	CG7900 +	chr3R	8104878	3` UTR	CG7900 +	chr3R_8_8100001	chr3R_8100001	KT1_1-HE
2112	chr3R	8207557	8207588	chr3R	8208403	8208434	F-element	9	846	3.0	7.5	5.2	1.5	877	chr3R	8207557	intergenic	not near genes	chr3R	8207996	intergenic	not near genes	chr3R	8208434	intergenic	not near genes	chr3R_9_8205001	chr3R_8205001	KT1_1-HE
2113	chr3R	8403006	8403041	chr3R	8412173	8412208	roo	19	9166	12.0	6.5	9.2	1.9	9202	chr3R	8403006	intron	CG45263 -	chr3R	8407607	intron	CG45263 -	chr3R	8412208	intron	CG45263 -	chr3R_19_8405001	chr3R_8405001	KT1_1-HE
2114	chr3R	8570483	8570492	chr3R	8575118	8575129	HMS-Beagle	5	4637	10.0	5.5	7.8	0.6	4646	chr3R	8570483	intergenic	not near genes	chr3R	8572806	intergenic	not near genes	chr3R	8575129	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	KT1_1-HE
2115	chr3R	8570493	8570506	chr3R	8575114	8575143	HMS-Beagle	7	4635	7.0	5.5	6.2	1.0	4650	chr3R	8570493	intergenic	not near genes	chr3R	8572818	intergenic	not near genes	chr3R	8575143	intergenic	not near genes	chr3R_7_8570001	chr3R_8570001	KT1_1-HE
2116	chr3R	8601770	8601798	chr3R	8610924	8610952	roo	11	9154	5.5	5.5	5.5	1.7	9182	chr3R	8601770	intron	5-HT2B +	chr3R	8606361	intron	5-HT2B +	chr3R	8610952	intron	5-HT2B +	chr3R_11_8605001	chr3R_8605001	KT1_1-HE
2118	chr3R	8707357	8707392	chr3R	8709799	8709834	jockey	27	2442	5.5	8.0	6.8	3.5	2477	chr3R	8707357	intergenic	not near genes	chr3R	8708596	intergenic	not near genes	chr3R	8709834	intergenic	not near genes	chr3R_27_8705001	chr3R_8705001	KT1_1-HE
2119	chr3R	8894867	8894905	chr3R	8896024	8896062	1360	18	1157	4.5	7.0	5.8	2.6	1195	chr3R	8894867	intron	pyd -	chr3R	8895464	intron	pyd -	chr3R	8896062	intron	pyd -	chr3R_18_8895001	chr3R_8895001	KT1_1-HE
2134	chr3R	9278777	9278807	chr3R	9284038	9284068	Rt1a	13	5259	2.0	4.5	3.2	3.1	5291	chr3R	9278777	intergenic	not near genes	chr3R	9281422	intergenic	not near genes	chr3R	9284068	intergenic	not near genes	chr3R_13_9280001	chr3R_9280001	KT1_1-HE
2136	chr3R	9319572	9319608	chr3R	9320008	9320044	jockey	21	435	5.5	3.5	4.5	3.8	472	chr3R	9319572	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_21_9315001	chr3R_9315001	KT1_1-HE
2137	chr3R	9361814	9361847	chr3R	9362056	9362089	pogo	8	242	3.5	2.5	3.0	2.0	275	chr3R	9361814	3` UTR	CG45050 +	chr3R	9361952	3` UTR	CG45050 +	chr3R	9362089	3` UTR	CG45050 +	chr3R_8_9360001	chr3R_9360001	KT1_1-HE
2143	chr3R	9699973	9700001	chr3R	9700063	9700091	1360	14	90	6.5	6.5	6.5	1.9	118	chr3R	9699973	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700091	intron	Unc-115a -	chr3R_14_9700001	chr3R_9700001	KT1_1-HE
2154	chr3R	10231791	10231812	chr3R	10237368	10237390	mdg3	8	5578	1.5	4.0	2.8	2.1	5599	chr3R	10231791	intron	CG42795 +	chr3R	10234590	intron	CG42795 +	chr3R	10237390	intron	CG42795 +	chr3R_8_10230001	chr3R_10230001	KT1_1-HE
2162	chr3R	10804172	10804208	chr3R	10811705	10811741	17.6	14	7533	4.5	3.0	3.8	2.9	7569	chr3R	10804172	intergenic	CG14692 -	chr3R	10807956	intergenic	not near genes	chr3R	10811741	3` UTR	CG14693 -	chr3R_14_10805001	chr3R_10805001	KT1_1-HE
2169	chr3R	11065584	11065604	chr3R	11071241	11071261	297	7	5657	7.0	7.5	7.2	0.9	5677	chr3R	11065584	intergenic	not near genes	chr3R	11068422	intergenic	not near genes	chr3R	11071261	intergenic	not near genes	chr3R_7_11065001	chr3R_11065001	KT1_1-HE
2179	chr3R	11379238	11379269	chr3R	11388393	11388425	roo	17	9155	5.0	12.0	8.5	1.8	9187	chr3R	11379238	intron	pros +	chr3R	11383832	intron	pros +	chr3R	11388425	intron	pros +	chr3R_17_11380001	chr3R_11380001	KT1_1-HE
2194	chr3R	11841059	11841071	chr3R	11846251	11846263	BS	7	5192	15.5	3.0	9.2	0.7	5204	chr3R	11841059	intron	CG6959 -	chr3R	11843661	intron	CG6959 -	chr3R	11846263	intron	CG6959 -	chr3R_7_11840001	chr3R_11840001	KT1_1-HE
2195	chr3R	11841074	11841099	chr3R	11846250	11846286	BS	8	5188	5.0	3.0	4.0	1.6	5212	chr3R	11841074	intron	CG6959 -	chr3R	11843680	intron	CG6959 -	chr3R	11846286	intron	CG6959 -	chr3R_8_11840001	chr3R_11840001	KT1_1-HE
2200	chr3R	12022890	12022897	chr3R	12025068	12025075	pogo	4	2178	6.5	4.0	5.2	0.6	2185	chr3R	12022890	intergenic	not near genes	chr3R	12023982	intergenic	not near genes	chr3R	12025075	intergenic	not near genes	chr3R_4_12020001	chr3R_12020001	KT1_1-HE
2201	chr3R	12022899	12022916	chr3R	12025066	12025093	pogo	9	2177	5.0	3.0	4.0	1.8	2194	chr3R	12022899	intergenic	not near genes	chr3R	12023996	intergenic	not near genes	chr3R	12025093	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	KT1_1-HE
2222	chr3R	12864561	12864593	chr3R	12865047	12865079	roo	5	486	1.5	2.0	1.8	1.8	518	chr3R	12864561	intergenic	not near genes	chr3R	12864820	intergenic	not near genes	chr3R	12865079	intergenic	not near genes	chr3R_5_12860001	chr3R_12860001	KT1_1-HE
2225	chr3R	12920149	12920184	chr3R	12925353	12925388	copia	19	5202	3.0	2.5	2.8	5.0	5239	chr3R	12920149	intron	beat-Vb +	chr3R	12922768	intron	beat-Vb +	chr3R	12925388	intron	beat-Vb +	chr3R_19_12920001	chr3R_12920001	KT1_1-HE
2228	chr3R	13143046	13143065	chr3R	13148608	13148643	mdg3	7	5572	4.0	4.0	4.0	1.4	5597	chr3R	13143046	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145844	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148643	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	KT1_1-HE
2237	chr3R	13517221	13517230	chr3R	13520039	13520048	jockey	4	2818	8.5	0.0	4.2	0.8	2827	chr3R	13517221	intergenic	not near genes	chr3R	13518634	intergenic	not near genes	chr3R	13520048	intergenic	not near genes	chr3R_4_13515001	chr3R_13515001	KT1_1-HE
2248	chr3R	14021646	14021680	chr3R	14023464	14023498	S-element	15	1817	5.0	4.5	4.8	2.6	1852	chr3R	14021646	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023498	intron	rdx -	chr3R_15_14020001	chr3R_14020001	KT1_1-HE
2254	chr3R	14180809	14180837	chr3R	14185575	14185603	F-element	17	4766	6.5	0.0	3.2	4.0	4794	chr3R	14180809	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185603	intron	Dop1R1 -	chr3R_17_14180001	chr3R_14180001	KT1_1-HE
2257	chr3R	14246401	14246407	chr3R	14247885	14247894	jockey	4	1491	3.0	1.5	2.2	1.2	1493	chr3R	14246401	intergenic	not near genes	chr3R	14247148	intergenic	not near genes	chr3R	14247894	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	KT1_1-HE
2278	chr3R	15041400	15041418	chr3R	15045185	15045202	Doc	6	3785	0.0	6.5	3.2	1.4	3802	chr3R	15041400	intergenic	not near genes	chr3R	15043301	intergenic	not near genes	chr3R	15045202	intergenic	not near genes	chr3R_6_15040001	chr3R_15040001	KT1_1-HE
2280	chr3R	15079811	15079836	chr3R	15080053	15080078	pogo	9	242	4.0	2.0	3.0	2.2	267	chr3R	15079811	3` UTR	CG6966 -	chr3R	15079944	3` UTR	CG6966 -	chr3R	15080078	3` UTR	CG6966 -	chr3R_9_15075001	chr3R_15075001	KT1_1-HE
2281	chr3R	15102493	15102531	chr3R	15109751	15109796	412	10	7260	6.0	0.5	3.2	2.4	7303	chr3R	15102493	intron	CG42788 -	chr3R	15106144	intron	CG42788 -	chr3R	15109796	intron	CG42788 -	chr3R_10_15105001	chr3R_15105001	KT1_1-HE
2282	chr3R	15132067	15132093	chr3R	15135114	15135160	Juan	20	3066	8.5	0.5	4.5	3.6	3093	chr3R	15132067	intergenic	CG42788 -	chr3R	15133614	intergenic	not near genes	chr3R	15135160	3` UTR	CG6912 -	chr3R_20_15130001	chr3R_15130001	KT1_1-HE
2283	chr3R	15162542	15162561	chr3R	15167311	15167330	F-element	6	4769	8.5	0.0	4.2	1.2	4788	chr3R	15162542	intron	Gyc88E +	chr3R	15164936	intron	Gyc88E +	chr3R	15167330	intron	Gyc88E +	chr3R_6_15160001	chr3R_15160001	KT1_1-HE
2289	chr3R	15601162	15601183	chr3R	15608685	15608706	412	9	7523	6.5	0.0	3.2	2.1	7544	chr3R	15601162	intergenic	not near genes	chr3R	15604934	intergenic	not near genes	chr3R	15608706	intergenic	not near genes	chr3R_9_15600001	chr3R_15600001	KT1_1-HE
2312	chr3R	16756318	16756352	chr3R	16762510	16762544	diver	10	6192	3.5	2.5	3.0	2.5	6226	chr3R	16756318	intron	bxd -	chr3R	16759431	intron	bxd -	chr3R	16762544	intron	bxd -	chr3R_10_16755001	chr3R_16755001	KT1_1-HE
2317	chr3R	17294660	17294686	chr3R	17295089	17295115	BS	11	429	6.5	0.0	3.2	2.6	455	chr3R	17294660	intergenic	not near genes	chr3R	17294888	intergenic	not near genes	chr3R	17295115	intergenic	not near genes	chr3R_11_17290001	chr3R_17290001	KT1_1-HE
2318	chr3R	17346690	17346718	chr3R	17348253	17348282	F-element	12	1563	3.5	5.5	4.5	2.2	1592	chr3R	17346690	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348282	intron	beat-IIa -	chr3R_12_17345001	chr3R_17345001	KT1_1-HE
2326	chr3R	17591296	17591322	chr3R	17591733	17591759	F-element	5	437	3.0	2.5	2.8	1.3	463	chr3R	17591296	intergenic	not near genes	chr3R	17591528	intergenic	not near genes	chr3R	17591759	intergenic	not near genes	chr3R_5_17590001	chr3R_17590001	KT1_1-HE
2327	chr3R	17638314	17638329	chr3R	17638801	17638816	roo	5	487	0.0	3.5	1.8	1.8	502	chr3R	17638314	intron	CG43175 +	chr3R	17638565	intron	CG43175 +	chr3R	17638816	intron,intron	CG43175 +,CR45222 +	chr3R_5_17635001	chr3R_17635001	KT1_1-HE
2341	chr3R	17925853	17925889	chr3R	17927321	17927357	hobo	26	1467	3.0	10.0	6.5	3.5	1504	chr3R	17925853	intron	cpo +	chr3R	17926605	intron	cpo +	chr3R	17927357	intron	cpo +	chr3R_26_17925001	chr3R_17925001	KT1_1-HE
2344	chr3R	18032785	18032803	chr3R	18040459	18040473	opus	5	7673	0.0	4.5	2.2	1.6	7688	chr3R	18032785	intergenic	not near genes	chr3R	18036629	intergenic	not near genes	chr3R	18040473	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	KT1_1-HE
2346	chr3R	18061584	18061612	chr3R	18063153	18063181	F-element	16	1569	2.5	5.5	4.0	3.2	1597	chr3R	18061584	intergenic	not near genes	chr3R	18062382	intergenic	not near genes	chr3R	18063181	intergenic	not near genes	chr3R_16_18060001	chr3R_18060001	KT1_1-HE
2351	chr3R	18331786	18331790	chr3R	18333281	18333285	hopper2	4	1495	6.5	6.0	6.2	0.6	1499	chr3R	18331786	3` UTR	CG15803 -	chr3R	18332536	intron	CG15803 -	chr3R	18333285	3` UTR	CG15803 -	chr3R_4_18330001	chr3R_18330001	KT1_1-HE
2364	chr3R	18606526	18606534	chr3R	18610748	18610756	F-element	8	4222	1.0	2.5	1.8	2.9	4230	chr3R	18606526	intron,intron	qin +,CG14304 -	chr3R	18608641	intron,intron	qin +,CG14304 -	chr3R	18610756	intron,intron	qin +,CG14304 -	chr3R_8_18605001	chr3R_18605001	KT1_1-HE
2382	chr3R	19193004	19193014	chr3R	19197304	19197319	F-element	5	4304	0.0	9.0	4.5	0.9	4315	chr3R	19193004	intron	CG31475 +	chr3R	19195162	intron	CG31475 +	chr3R	19197319	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	KT1_1-HE
2417	chr3R	20109539	20109568	chr3R	20114746	20114775	copia	13	5207	5.5	3.5	4.5	2.4	5236	chr3R	20109539	intergenic	not near genes	chr3R	20112157	intergenic	not near genes	chr3R	20114775	intergenic	CG10887 +	chr3R_13_20110001	chr3R_20110001	KT1_1-HE
2418	chr3R	20156691	20156715	chr3R	20165862	20165886	roo	9	9171	3.5	4.0	3.8	1.9	9195	chr3R	20156691	intergenic	not near genes	chr3R	20161288	intergenic	not near genes	chr3R	20165886	intergenic	not near genes	chr3R_9_20160001	chr3R_20160001	KT1_1-HE
2422	chr3R	20245285	20245305	chr3R	20248896	20248916	F-element	7	3611	4.5	5.0	4.8	1.2	3631	chr3R	20245285	3` UTR	Nlg4 +	chr3R	20247100	intergenic	not near genes	chr3R	20248916	intergenic	not near genes	chr3R_7_20245001	chr3R_20245001	KT1_1-HE
2423	chr3R	20266513	20266543	chr3R	20272985	20273015	Burdock	16	6471	6.5	6.0	6.2	2.2	6502	chr3R	20266513	intron	cic +	chr3R	20269764	intron	cic +	chr3R	20273015	intron	cic +	chr3R_16_20265001	chr3R_20265001	KT1_1-HE
2426	chr3R	20330998	20331030	chr3R	20331485	20331517	roo	11	487	2.5	2.0	2.2	3.4	519	chr3R	20330998	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331517	intergenic	not near genes	chr3R_11_20330001	chr3R_20330001	KT1_1-HE
2436	chr3R	20506587	20506616	chr3R	20507391	20507420	BS	10	804	3.5	6.5	5.0	1.7	833	chr3R	20506587	intergenic	Or92a +	chr3R	20507004	intergenic	CG4288 -	chr3R	20507420	3` UTR	CG4288 -	chr3R_10_20505001	chr3R_20505001	KT1_1-HE
2451	chr3R	20854495	20854511	chr3R	20859270	20859294	Doc	4	4785	11.0	2.0	6.5	0.5	4799	chr3R	20854495	intron	Ir93a -	chr3R	20856894	intron	Ir93a -	chr3R	20859294	exon	Ir93a -	chr3R_4_20855001	chr3R_20855001	KT1_1-HE
2457	chr3R	21141672	21141703	chr3R	21150154	21150185	Tirant	6	8481	3.5	2.0	2.8	1.6	8513	chr3R	21141672	intron	SNF4Agamma +	chr3R	21145928	intron	SNF4Agamma +	chr3R	21150185	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	KT1_1-HE
2477	chr3R	21609026	21609040	chr3R	21611636	21611648	NOF	4	2617	4.5	3.5	4.0	0.8	2622	chr3R	21609026	intron	InR -	chr3R	21610337	intron	InR -	chr3R	21611648	intron	InR -	chr3R_4_21610001	chr3R_21610001	KT1_1-HE
2482	chr3R	21761120	21761136	chr3R	21768511	21768529	mdg1	6	7392	3.5	3.5	3.5	1.3	7409	chr3R	21761120	exon	CG42335 +	chr3R	21764824	intron	CG42335 +	chr3R	21768529	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	KT1_1-HE
2483	chr3R	21761139	21761155	chr3R	21768532	21768548	mdg1	10	7393	2.0	7.5	4.8	1.7	7409	chr3R	21761139	exon	CG42335 +	chr3R	21764844	intron	CG42335 +	chr3R	21768548	exon	CG42335 +	chr3R_10_21760001	chr3R_21760001	KT1_1-HE
2499	chr3R	22450541	22450579	chr3R	22453182	22453220	NOF	19	2640	3.0	6.5	4.8	3.3	2679	chr3R	22450541	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453220	intron	CG34376 +	chr3R_19_22450001	chr3R_22450001	KT1_1-HE
2509	chr3R	22881197	22881211	chr3R	22884904	22884918	Doc	5	3707	3.5	0.0	1.8	1.8	3721	chr3R	22881197	intergenic	not near genes	chr3R	22883058	intergenic	not near genes	chr3R	22884918	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	KT1_1-HE
2524	chr3R	23558400	23558429	chr3R	23560182	23560211	Bari1	16	1782	5.5	5.5	5.5	2.5	1811	chr3R	23558400	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560211	intron	beat-IV +	chr3R_16_23555001	chr3R_23555001	KT1_1-HE
2527	chr3R	23684693	23684729	chr3R	23685180	23685214	roo	20	486	4.5	4.5	4.5	3.6	521	chr3R	23684693	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685214	exon	CG18754 +	chr3R_20_23680001	chr3R_23680001	KT1_1-HE
2530	chr3R	23835402	23835423	chr3R	23844553	23844574	roo	9	9151	6.5	0.0	3.2	2.1	9172	chr3R	23835402	intron	CG34355 +	chr3R	23839988	intron	CG34355 +	chr3R	23844574	intron	CG34355 +	chr3R_9_23835001	chr3R_23835001	KT1_1-HE
2538	chr3R	24072082	24072113	chr3R	24072521	24072536	jockey	9	432	9.5	0.0	4.8	1.6	454	chr3R	24072082	intron	4EHP -	chr3R	24072309	intron	4EHP -	chr3R	24072536	intron	4EHP -	chr3R_9_24070001	chr3R_24070001	KT1_1-HE
2540	chr3R	24076918	24076946	chr3R	24078386	24078414	hobo	7	1468	3.0	3.5	3.2	1.7	1496	chr3R	24076918	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078414	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	KT1_1-HE
2545	chr3R	10820231	10820234	chr3R	24203324	24203343	412	5	13383096	27.5	15.5	21.5	0.2	13383112	chr3R	10820231	intergenic	not near genes	chr3R	17511787	intergenic	not near genes	chr3R	24203343	intron	twin -	chr3R_5_17510001	chr3R_17510001	KT1_1-HE
2552	chr3R	24493281	24493310	chr3R	24493511	24493540	BS	10	230	3.5	6.0	4.8	1.7	259	chr3R	24493281	intergenic	not near genes	chr3R	24493410	intergenic	not near genes	chr3R	24493540	intergenic	not near genes	chr3R_10_24490001	chr3R_24490001	KT1_1-HE
2559	chr3R	24730090	24730118	chr3R	24732469	24732497	Doc	8	2379	3.5	0.0	1.8	2.9	2407	chr3R	24730090	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732497	intron	tok +	chr3R_8_24730001	chr3R_24730001	KT1_1-HE
2566	chr3R	24927125	24927164	chr3R	24931917	24931956	Doc	11	4792	1.0	2.0	1.5	4.4	4831	chr3R	24927125	intergenic	Trf4-2 +	chr3R	24929540	intergenic	not near genes	chr3R	24931956	intergenic	CG11771 +	chr3R_11_24925001	chr3R_24925001	KT1_1-HE
2590	chr3R	25725827	25725860	chr3R	25734988	25735021	roo	6	9161	3.5	4.5	4.0	1.2	9194	chr3R	25725827	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735021	intron	LpR2 -	chr3R_6_25730001	chr3R_25730001	KT1_1-HE
2593	chr3R	25832695	25832723	chr3R	25841878	25841906	roo	8	9183	5.5	9.5	7.5	0.9	9211	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841906	exon	alpha4GT2 +	chr3R_8_25835001	chr3R_25835001	KT1_1-HE
2607	chr3R	26376339	26376356	chr3R	26385490	26385517	roo	12	9158	5.5	0.0	2.8	3.2	9178	chr3R	26376339	intergenic	not near genes	chr3R	26380928	intergenic	not near genes	chr3R	26385517	intergenic	not near genes	chr3R_12_26380001	chr3R_26380001	KT1_1-HE
2608	chr3R	26510503	26510527	chr3R	26519565	26519589	roo	12	9062	5.5	6.5	6.0	1.7	9086	chr3R	26510503	intron	plum -	chr3R	26515046	intron	plum -	chr3R	26519589	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	KT1_1-HE
2611	chr3R	26558325	26558361	chr3R	26565638	26565674	Stalker4	12	7313	2.5	7.0	4.8	2.1	7349	chr3R	26558325	intron	scrib +	chr3R	26562000	intron	scrib +	chr3R	26565674	intron	scrib +	chr3R_12_26560001	chr3R_26560001	KT1_1-HE
2614	chr3R	26642729	26642760	chr3R	26643123	26643154	jockey	6	395	4.0	2.5	3.2	1.4	425	chr3R	26642729	intergenic	not near genes	chr3R	26642942	intergenic	not near genes	chr3R	26643154	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	KT1_1-HE
2619	chr3R	26810551	26810585	chr3R	26811037	26811071	roo	10	486	6.5	5.5	6.0	1.4	520	chr3R	26810551	intron	Tl +	chr3R	26810811	intron	Tl +	chr3R	26811071	intron	Tl +	chr3R_10_26810001	chr3R_26810001	KT1_1-HE
2622	chr3R	27007406	27007436	chr3R	27016542	27016572	roo	11	9135	3.0	4.0	3.5	2.4	9166	chr3R	27007406	intron	RYa-R +	chr3R	27011989	intron	RYa-R +	chr3R	27016572	intron	RYa-R +	chr3R_11_27010001	chr3R_27010001	KT1_1-HE
2626	chr3R	27140514	27140546	chr3R	27148125	27148157	412	16	7610	3.0	8.0	5.5	2.5	7643	chr3R	27140514	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148157	intron	CG6051 -	chr3R_16_27140001	chr3R_27140001	KT1_1-HE
2632	chr3R	27342791	27342826	chr3R	27351373	27351408	Tirant	10	8582	3.5	4.0	3.8	2.1	8617	chr3R	27342791	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351408	intron	CG42534 +	chr3R_10_27345001	chr3R_27345001	KT1_1-HE
2640	chr3R	27725564	27725597	chr3R	27731007	27731040	I-element	7	5443	3.5	3.5	3.5	1.6	5476	chr3R	27725564	intergenic	not near genes	chr3R	27728302	intergenic	not near genes	chr3R	27731040	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	KT1_1-HE
2651	chr3R	27856760	27856791	chr3R	27858240	27858275	hopper2	18	1484	7.0	7.0	7.0	2.2	1515	chr3R	27856760	intron	CG34353 -	chr3R	27857518	intron	CG34353 -	chr3R	27858275	intron	CG34353 -	chr3R_18_27855001	chr3R_27855001	KT1_1-HE
2652	chr3R	27862957	27862987	chr3R	27868263	27868266	Transpac	19	5301	2.0	5.5	3.8	4.0	5309	chr3R	27862957	intron	CG34353 -	chr3R	27865612	intron	CG34353 -	chr3R	27868266	intron	CG34353 -	chr3R_19_27865001	chr3R_27865001	KT1_1-HE
2653	chr3R	27875698	27875733	chr3R	27882754	27882789	297	20	7056	4.5	9.0	6.8	2.6	7091	chr3R	27875698	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882789	intron	CG34353 -	chr3R_20_27875001	chr3R_27875001	KT1_1-HE
2657	chr3R	28068490	28068521	chr3R	28073933	28073964	I-element	5	5443	8.0	3.0	5.5	0.8	5474	chr3R	28068490	intron	CG34362 +	chr3R	28071227	intron	CG34362 +	chr3R	28073964	intron	CG34362 +	chr3R_5_28070001	chr3R_28070001	KT1_1-HE
2659	chr3R	28173669	28173699	chr3R	28181100	28181130	mdg1	7	7431	4.0	1.5	2.8	1.8	7461	chr3R	28173669	intron	CG34354 +	chr3R	28177400	intron	CG34354 +	chr3R	28181130	intron	CG34354 +	chr3R_7_28175001	chr3R_28175001	KT1_1-HE
2661	chr3R	28253344	28253371	chr3R	28255855	28255882	jockey	13	2510	3.0	7.0	5.0	2.2	2538	chr3R	28253344	intergenic	not near genes	chr3R	28254613	intergenic	not near genes	chr3R	28255882	intergenic	not near genes	chr3R_13_28250001	chr3R_28250001	KT1_1-HE
2678	chr3R	28758282	28758302	chr3R	28763900	28763920	roo	11	5618	8.5	0.0	4.2	2.1	5638	chr3R	28758282	intergenic	aqrs -	chr3R	28761101	intergenic	not near genes	chr3R	28763920	intergenic	not near genes	chr3R_11_28760001	chr3R_28760001	KT1_1-HE
2679	chr3R	28763900	28763917	chr3R	28771344	28771361	Stalker4	9	7444	0.0	2.0	1.0	4.5	7461	chr3R	28763900	intergenic	not near genes	chr3R	28767630	intergenic	not near genes	chr3R	28771361	intergenic	not near genes	chr3R_9_28765001	chr3R_28765001	KT1_1-HE
2688	chr3R	29079377	29079411	chr3R	29080750	29080784	NOF	18	1373	6.0	6.0	6.0	2.6	1407	chr3R	29079377	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080784	intron	CG11873 +	chr3R_18_29080001	chr3R_29080001	KT1_1-HE
2694	chr3R	29319821	29319859	chr3R	29320141	29320179	jockey	18	320	4.5	6.5	5.5	2.8	358	chr3R	29319821	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320179	intergenic	not near genes	chr3R_18_29320001	chr3R_29320001	KT1_1-HE
2705	chr3R	29738269	29738297	chr3R	29739737	29739765	hobo	4	1468	1.0	2.0	1.5	1.6	1496	chr3R	29738269	intergenic	CG1969 +,CG7598 +	chr3R	29739017	intron	CG1969 +	chr3R	29739765	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	KT1_1-HE
2709	chr3R	29882020	29882052	chr3R	29891178	29891210	roo	8	9156	3.0	3.5	3.2	1.9	9190	chr3R	29882020	intron	CG31038 +	chr3R	29886615	intron	CG31038 +	chr3R	29891210	intron	CG31038 +	chr3R_8_29885001	chr3R_29885001	KT1_1-HE
2716	chr3R	30084865	30084881	chr3R	30086332	30086348	hobo	8	1467	0.5	5.0	2.8	2.1	1483	chr3R	30084865	intron	sima +	chr3R	30085606	intron	sima +	chr3R	30086348	intron	sima +	chr3R_8_30085001	chr3R_30085001	KT1_1-HE
2721	chr3R	30238759	30238771	chr3R	30239924	30239936	1360	8	1165	2.5	0.0	1.2	3.6	1177	chr3R	30238759	intergenic	not near genes	chr3R	30239348	intergenic	not near genes	chr3R	30239936	intergenic	not near genes	chr3R_8_30235001	chr3R_30235001	KT1_1-HE
2723	chr3R	30317326	30317356	chr3R	30324919	30324949	roo	5	7593	0.0	1.5	0.8	2.8	7623	chr3R	30317326	intron	hdc +	chr3R	30321138	intron	hdc +	chr3R	30324949	intron	hdc +	chr3R_5_30320001	chr3R_30320001	KT1_1-HE
2725	chr3R	30375537	30375570	chr3R	30383163	30383196	412	15	7626	4.5	4.5	4.5	2.7	7659	chr3R	30375537	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383196	intergenic	not near genes	chr3R_15_30375001	chr3R_30375001	KT1_1-HE
2732	chr3R	30480474	30480507	chr3R	30482943	30482976	jockey	6	2469	2.5	4.0	3.2	1.4	2502	chr3R	30480474	intron	PH4alphaEFB +	chr3R	30481725	intron	PH4alphaEFB +	chr3R	30482976	intron	PH4alphaEFB +	chr3R_6_30480001	chr3R_30480001	KT1_1-HE
2740	chr3R	30679541	30679547	chr3R	30687011	30687017	blood	6	7470	0.0	10.0	5.0	1.0	7476	chr3R	30679541	intergenic	not near genes	chr3R	30683279	intergenic	not near genes	chr3R	30687017	intergenic	not near genes	chr3R_6_30680001	chr3R_30680001	KT1_1-HE
2744	chr3R	30818807	30818846	chr3R	30820373	30820412	1360	19	1566	4.0	6.0	5.0	3.2	1605	chr3R	30818807	intron	cindr +	chr3R	30819610	intron	cindr +	chr3R	30820412	intron	cindr +	chr3R_19_30815001	chr3R_30815001	KT1_1-HE
2748	chr3R	31074229	31074245	chr3R	31081828	31081844	springer	7	7599	5.0	0.0	2.5	2.0	7615	chr3R	31074229	intron	Sox100B +	chr3R	31078036	intron	Sox100B +	chr3R	31081844	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	KT1_1-HE
2763	chr3R	31691531	31691562	chr3R	31696298	31696329	Doc	13	4766	4.5	3.5	4.0	2.6	4798	chr3R	31691531	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696329	intergenic	not near genes	chr3R_13_31690001	chr3R_31690001	KT1_1-HE
2778	chr3R	31997991	31998019	chr3R	32005462	32005490	blood	10	7471	8.5	5.5	7.0	1.2	7499	chr3R	31997991	intron	heph -	chr3R	32001740	intron	heph -	chr3R	32005490	intron	heph -	chr3R_10_32000001	chr3R_32000001	KT1_1-HE
2780	chr4	76491	76517	chr4	81935	81961	I-element	11	5442	3.5	6.0	4.8	1.9	5470	chr4	76491	intron	pan +	chr4	79226	intron	pan +	chr4	81961	intron	pan +	chr4_11_75001	chr4_75001	KT1_1-HE
2784	chr4	319994	320009	chr4	328171	328186	Stalker2	4	8177	5.0	2.5	3.8	0.8	8192	chr4	319994	3` UTR	CG32850 +	chr4	324090	intron	CG32850 +	chr4	328186	3` UTR	CG32850 +	chr4_4_320001	chr4_320001	KT1_1-HE
2786	chr4	671602	671638	chr4	680186	680206	Tirant	19	8582	3.0	9.0	6.0	2.7	8604	chr4	671602	intron	CG11360 +	chr4	675904	intron	CG11360 +	chr4	680206	intron	CG11360 +	chr4_19_675001	chr4_675001	KT1_1-HE
2790	chrX	295856	295882	chrX	303477	303503	412	12	7621	8.5	4.5	6.5	1.6	7647	chrX	295856	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303503	intron	CG3777 +	chrX_12_295001	chrX_295001	KT1_1-HE
2791	chrX	318468	318499	chrX	323555	323586	flea	28	5086	7.0	8.0	7.5	3.3	5118	chrX	318468	intron,intron	CG3777 +,CG32816 -	chrX	321027	intron,intron	CG3777 +,CG32816 -	chrX	323586	intron,intron	CG3777 +,CG32816 -	chrX_28_320001	chrX_320001	KT1_1-HE
2793	chrX	428417	428451	chrX	434603	434637	3S18	15	6186	4.5	3.0	3.8	3.1	6220	chrX	428417	intron	CG32816 -	chrX	431527	intron	CG32816 -	chrX	434637	intron	CG32816 -	chrX_15_430001	chrX_430001	KT1_1-HE
2796	chrX	551422	551429	chrX	558985	558992	412	6	7563	9.0	4.0	6.5	0.8	7570	chrX	551422	intron	Appl +	chrX	555207	intron	Appl +	chrX	558992	intron	Appl +	chrX_6_555001	chrX_555001	KT1_1-HE
2797	chrX	551431	551452	chrX	558982	559015	412	11	7560	4.5	3.5	4.0	2.2	7584	chrX	551431	intron	Appl +	chrX	555223	intron	Appl +	chrX	559015	intron	Appl +	chrX_11_555001	chrX_555001	KT1_1-HE
2806	chrX	812266	812296	chrX	817900	817932	297	9	5634	3.5	3.0	3.2	2.1	5666	chrX	812266	intron	CG43867 -	chrX	815099	intron	CG43867 -	chrX	817932	intron	CG43867 -	chrX_9_815001	chrX_815001	KT1_1-HE
2807	chrX	827600	827634	chrX	835393	835421	roo	8	7792	5.0	3.0	4.0	1.6	7821	chrX	827600	intron	CG43867 -	chrX	831510	intron	CG43867 -	chrX	835421	intron	CG43867 -	chrX_8_830001	chrX_830001	KT1_1-HE
2810	chrX	906708	906734	chrX	908498	908524	S-element	13	1790	2.5	9.0	5.8	1.9	1816	chrX	906708	intron	CG43867 -	chrX	907616	intron	CG43867 -	chrX	908524	intron	CG43867 -	chrX_13_905001	chrX_905001	KT1_1-HE
2819	chrX	1357776	1357813	chrX	1367947	1367972	Doc	12	10170	3.0	4.5	3.8	2.5	10196	chrX	1357776	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367972	intergenic	not near genes	chrX_12_1360001	chrX_1360001	KT1_1-HE
2821	chrX	1518041	1518064	chrX	1523444	1523467	jockey	7	5403	2.5	3.0	2.8	1.8	5426	chrX	1518041	intergenic	inc +	chrX	1520754	intergenic	not near genes	chrX	1523467	intergenic	not near genes	chrX_7_1520001	chrX_1520001	KT1_1-HE
2822	chrX	1627973	1628001	chrX	1635442	1635470	gtwin	12	7469	8.0	7.0	7.5	1.4	7497	chrX	1627973	intron,intron	Mur2B -,br +	chrX	1631722	intron,intron	Mur2B -,br +	chrX	1635470	intron,intron	Mur2B -,br +	chrX_12_1630001	chrX_1630001	KT1_1-HE
2826	chrX	1930539	1930566	chrX	1938111	1938138	opus	6	7572	2.0	3.5	2.8	1.6	7599	chrX	1930539	intergenic	CG11596 +	chrX	1934338	intergenic	not near genes	chrX	1938138	3` UTR	CG3857 -	chrX_6_1930001	chrX_1930001	KT1_1-HE
2827	chrX	1954905	1954911	chrX	1962834	1962848	Stalker2	4	7935	1.5	1.5	1.5	1.6	7943	chrX	1954905	intron	Hr4 +	chrX	1958876	intron	Hr4 +	chrX	1962848	intron	Hr4 +	chrX_4_1955001	chrX_1955001	KT1_1-HE
2831	chrX	2399834	2399863	chrX	2408188	2408194	roo	13	8350	5.5	1.0	3.2	3.1	8360	chrX	2399834	intergenic	not near genes	chrX	2404014	intergenic	not near genes	chrX	2408194	intergenic	not near genes	chrX_13_2400001	chrX_2400001	KT1_1-HE
2836	chrX	2664387	2664420	chrX	2665534	2665567	1360	27	1147	8.0	12.0	10.0	2.5	1180	chrX	2664387	intron	sgg +	chrX	2664977	intron	sgg +	chrX	2665567	intron	sgg +	chrX_27_2660001	chrX_2660001	KT1_1-HE
2841	chrX	2844900	2844932	chrX	2852311	2852343	mdg1	19	7411	6.0	3.0	4.5	3.5	7443	chrX	2844900	intron	kirre +	chrX	2848622	intron	kirre +	chrX	2852343	intron	kirre +	chrX_19_2845001	chrX_2845001	KT1_1-HE
2846	chrX	3058020	3058052	chrX	3058262	3058294	pogo	14	242	5.5	8.5	7.0	1.8	274	chrX	3058020	intron	kirre +	chrX	3058157	intron	kirre +	chrX	3058294	intron	kirre +	chrX_14_3055001	chrX_3055001	KT1_1-HE
2847	chrX	3075644	3075650	chrX	3080951	3080956	Transpac	5	5307	7.0	0.0	3.5	1.1	5312	chrX	3075644	intron	kirre +	chrX	3078300	intron	kirre +	chrX	3080956	intron	kirre +	chrX_5_3075001	chrX_3075001	KT1_1-HE
2852	chrX	3415014	3415051	chrX	3421200	3421237	3S18	8	6186	0.0	3.0	1.5	3.2	6223	chrX	3415014	intron,intron	CR44999 +,CG12535 -	chrX	3418126	intron,intron	CR44999 +,CG12535 -	chrX	3421237	intron,intron	CR44999 +,CG12535 -	chrX_8_3415001	chrX_3415001	KT1_1-HE
2853	chrX	3493089	3493123	chrX	3502249	3502283	roo	10	9160	4.5	3.0	3.8	2.1	9194	chrX	3493089	intron,intron	CR44999 +,Gas8 -	chrX	3497686	intron,intron	CR44999 +,Gas8 -	chrX	3502283	intron,intron	CR44999 +,Gas8 -	chrX_10_3495001	chrX_3495001	KT1_1-HE
2858	chrX	3597548	3597582	chrX	3619717	3619751	roo	15	22167	5.0	4.5	4.8	2.6	22203	chrX	3597548	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619751	intron	AstA-R1 +	chrX_15_3605001	chrX_3605001	KT1_1-HE
2863	chrX	3726760	3726797	chrX	3730158	3730195	NOF	16	3398	4.0	0.0	2.0	5.3	3435	chrX	3726760	intron	tlk +	chrX	3728478	intron	tlk +	chrX	3730195	intron	tlk +	chrX_16_3725001	chrX_3725001	KT1_1-HE
2868	chrX	3842324	3842350	chrX	3842566	3842592	pogo	14	242	5.0	5.0	5.0	2.3	268	chrX	3842324	intron	ec +	chrX	3842458	intron	ec +	chrX	3842592	intron	ec +	chrX_14_3840001	chrX_3840001	KT1_1-HE
2871	chrX	3986876	3986889	chrX	3994510	3994523	412	6	7634	5.5	0.5	3.0	1.5	7647	chrX	3986876	intergenic	not near genes	chrX	3990700	intergenic	not near genes	chrX	3994523	intergenic	not near genes	chrX_6_3990001	chrX_3990001	KT1_1-HE
2873	chrX	4157881	4157918	chrX	4164933	4164970	297	21	7052	5.5	6.5	6.0	3.0	7089	chrX	4157881	intron	Fas2 -	chrX	4161426	intron	Fas2 -	chrX	4164970	intron	Fas2 -	chrX_21_4160001	chrX_4160001	KT1_1-HE
2887	chrX	4700394	4700421	chrX	4700738	4700765	jockey	12	342	2.0	2.5	2.2	3.8	371	chrX	4700394	3` UTR	ctp +	chrX	4700580	3` UTR	ctp +	chrX	4700765	3` UTR	ctp +	chrX_12_4700001	chrX_4700001	KT1_1-HE
2891	chrX	4763255	4763284	chrX	4763744	4763773	Stalker4	10	489	3.0	3.5	3.2	2.4	518	chrX	4763255	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763773	intergenic	not near genes	chrX_10_4760001	chrX_4760001	KT1_1-HE
2892	chrX	4792379	4792411	chrX	4792813	4792845	jockey	10	434	4.0	2.5	3.2	2.4	466	chrX	4792379	intergenic	not near genes	chrX	4792612	intergenic	not near genes	chrX	4792845	intergenic	not near genes	chrX_10_4790001	chrX_4790001	KT1_1-HE
2893	chrX	4827977	4828001	chrX	4835337	4835373	Stalker4	15	7368	4.5	5.0	4.8	2.6	7396	chrX	4827977	intergenic	not near genes	chrX	4831675	intergenic	not near genes	chrX	4835373	intergenic	not near genes	chrX_15_4830001	chrX_4830001	KT1_1-HE
2897	chrX	4990040	4990077	chrX	4997255	4997292	roo	13	7215	2.5	6.5	4.5	2.4	7252	chrX	4990040	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997292	intron	CR44833 -	chrX_13_4990001	chrX_4990001	KT1_1-HE
2900	chrX	5096272	5096300	chrX	5103838	5103866	springer	13	7566	2.5	2.5	2.5	3.7	7594	chrX	5096272	intron,intron	CG15465 +,rg +	chrX	5100069	intron,intron	CG15465 +,rg +	chrX	5103866	intron,intron	CG15465 +,rg +	chrX_13_5100001	chrX_5100001	KT1_1-HE
2903	chrX	5338704	5338729	chrX	5339957	5339983	jockey	6	1253	3.5	4.5	4.0	1.2	1279	chrX	5338704	intergenic	not near genes	chrX	5339344	intergenic	not near genes	chrX	5339983	intergenic	SK +	chrX_6_5335001	chrX_5335001	KT1_1-HE
2909	chrX	5884161	5884183	chrX	5884403	5884425	pogo	8	242	5.0	2.5	3.8	1.7	264	chrX	5884161	intron	CR45668 -	chrX	5884293	intron	CR45668 -	chrX	5884425	intron	CR45668 -	chrX_8_5880001	chrX_5880001	KT1_1-HE
2912	chrX	6171580	6171616	chrX	6179014	6179050	Quasimodo	19	7434	4.0	4.5	4.2	3.7	7470	chrX	6171580	intron	Ca-alpha1T -	chrX	6175315	intron	Ca-alpha1T -	chrX	6179050	intron	Ca-alpha1T -	chrX_19_6175001	chrX_6175001	KT1_1-HE
2915	chrX	6335216	6335241	chrX	6337727	6337752	Tirant	14	2511	0.0	7.5	3.8	2.9	2536	chrX	6335216	intergenic	not near genes	chrX	6336484	intergenic	not near genes	chrX	6337752	intergenic	CG3842 +	chrX_14_6335001	chrX_6335001	KT1_1-HE
2916	chrX	6392875	6392901	chrX	6397641	6397667	Doc	6	4766	2.5	3.0	2.8	1.6	4792	chrX	6392875	intergenic	not near genes	chrX	6395271	intergenic	not near genes	chrX	6397667	intergenic	not near genes	chrX_6_6395001	chrX_6395001	KT1_1-HE
2920	chrX	6562816	6562850	chrX	6571299	6571333	Tirant	14	8482	3.0	3.0	3.0	3.5	8517	chrX	6562816	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571333	intron	CG34417 +	chrX_14_6565001	chrX_6565001	KT1_1-HE
2929	chrX	7023599	7023629	chrX	7030990	7031020	Tabor	4	7391	5.5	2.5	4.0	0.8	7421	chrX	7023599	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031020	intron	CG12541 -	chrX_4_7025001	chrX_7025001	KT1_1-HE
2932	chrX	7125247	7125264	chrX	7134407	7134424	roo	5	9160	1.5	0.0	0.8	2.8	9177	chrX	7125247	intergenic	not near genes	chrX	7129836	intergenic	not near genes	chrX	7134424	intergenic	not near genes	chrX_5_7125001	chrX_7125001	KT1_1-HE
2942	chrX	7702902	7702931	chrX	7703342	7703365	jockey	19	440	11.0	8.5	9.8	1.8	463	chrX	7702902	intron	CHES-1-like -	chrX	7703134	intron	CHES-1-like -	chrX	7703365	intron	CHES-1-like -	chrX_19_7700001	chrX_7700001	KT1_1-HE
2944	chrX	7784231	7784240	chrX	7784536	7784545	jockey	4	306	5.0	3.0	4.0	0.8	314	chrX	7784231	intergenic	not near genes	chrX	7784388	intergenic	not near genes	chrX	7784545	intergenic	not near genes	chrX_4_7780001	chrX_7780001	KT1_1-HE
2948	chrX	7845722	7845756	chrX	7847214	7847248	hopper2	9	1491	1.5	4.5	3.0	2.2	1526	chrX	7845722	intergenic	not near genes	chrX	7846485	intergenic	not near genes	chrX	7847248	intergenic	not near genes	chrX_9_7845001	chrX_7845001	KT1_1-HE
2949	chrX	8031429	8031461	chrX	8035739	8035771	Juan	13	4310	5.0	7.0	6.0	1.9	4342	chrX	8031429	intergenic	not near genes	chrX	8033600	intergenic	not near genes	chrX	8035771	3` UTR	CG2233 -	chrX_13_8030001	chrX_8030001	KT1_1-HE
2956	chrX	8364836	8364864	chrX	8365241	8365269	BS	8	405	3.5	7.0	5.2	1.3	433	chrX	8364836	intron	nAChRalpha3 -	chrX	8365052	intron	nAChRalpha3 -	chrX	8365269	intron	nAChRalpha3 -	chrX_8_8365001	chrX_8365001	KT1_1-HE
2965	chrX	8922325	8922359	chrX	8922760	8922794	jockey	14	435	6.0	4.0	5.0	2.3	469	chrX	8922325	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922794	intron	rdgA +	chrX_14_8920001	chrX_8920001	KT1_1-HE
2966	chrX	8927581	8927604	chrX	8929852	8929875	NOF	13	2270	5.5	3.5	4.5	2.4	2294	chrX	8927581	intron	rdgA +	chrX	8928728	intron	rdgA +	chrX	8929875	intron	rdgA +	chrX_13_8925001	chrX_8925001	KT1_1-HE
2968	chrX	8948776	8948787	chrX	8956284	8956295	roo	6	7508	1.5	4.5	3.0	1.5	7519	chrX	8948776	intron	rdgA +	chrX	8952536	intron	rdgA +	chrX	8956295	intron	rdgA +	chrX_6_8950001	chrX_8950001	KT1_1-HE
2983	chrX	9508130	9508167	chrX	9509649	9509686	jockey	12	1519	2.0	2.0	2.0	4.0	1556	chrX	9508130	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509686	intron	CG32700 -	chrX_12_9505001	chrX_9505001	KT1_1-HE
2985	chrX	9575791	9575824	chrX	9576116	9576149	mdg3	10	325	2.0	4.5	3.2	2.4	358	chrX	9575791	intron,exon	CG32699 -,CG42395 -	chrX	9575970	intron,intron	CG32699 -,CG42395 -	chrX	9576149	intron,5` UTR	CG32699 -,CG42395 -	chrX_10_9575001	chrX_9575001	KT1_1-HE
2992	chrX	10138215	10138248	chrX	10145720	10145745	412	14	7504	5.0	1.5	3.2	3.3	7530	chrX	10138215	intron,intron	RhoU +,CR44894 -	chrX	10141980	intron,intron	RhoU +,CR44894 -	chrX	10145745	intron,intron	RhoU +,CR44894 -	chrX_14_10140001	chrX_10140001	KT1_1-HE
2995	chrX	10267299	10267336	chrX	10276450	10276487	roo	13	9151	1.5	3.0	2.2	4.1	9188	chrX	10267299	3` UTR	alpha-Man-I -	chrX	10271893	intron	alpha-Man-I -	chrX	10276487	3` UTR	alpha-Man-I -	chrX_13_10270001	chrX_10270001	KT1_1-HE
3002	chrX	10550856	10550887	chrX	10552323	10552355	hobo	13	1468	4.0	4.0	4.0	2.6	1499	chrX	10550856	intron	spri -	chrX	10551606	intron	spri -	chrX	10552355	intron	spri -	chrX_13_10550001	chrX_10550001	KT1_1-HE
3005	chrX	10686066	10686082	chrX	10691213	10691229	roo	9	5147	6.5	1.0	3.8	1.9	5163	chrX	10686066	intron	X11Lbeta +	chrX	10688648	intron	X11Lbeta +	chrX	10691229	intron	X11Lbeta +	chrX_9_10685001	chrX_10685001	KT1_1-HE
3013	chrX	11194453	11194460	chrX	11201871	11201882	gypsy5	5	7421	1.5	12.5	7.0	0.6	7429	chrX	11194453	intergenic	not near genes	chrX	11198168	intergenic	not near genes	chrX	11201882	intergenic	CG11106 +	chrX_5_11195001	chrX_11195001	KT1_1-HE
3016	chrX	11268560	11268596	chrX	11270053	11270090	hopper2	12	1492	3.0	4.5	3.8	2.5	1530	chrX	11268560	intron	CG44422 -	chrX	11269325	intron	CG44422 -	chrX	11270090	intron	CG44422 -	chrX_12_11265001	chrX_11265001	KT1_1-HE
3017	chrX	11312065	11312087	chrX	11319419	11319441	Stalker2	8	7354	1.5	6.0	3.8	1.7	7376	chrX	11312065	intergenic	not near genes	chrX	11315753	intergenic	not near genes	chrX	11319441	intergenic	not near genes	chrX_8_11315001	chrX_11315001	KT1_1-HE
3021	chrX	11571453	11571460	chrX	11571694	11571702	pogo	4	242	5.5	4.5	5.0	0.7	249	chrX	11571453	3` UTR	Kmn1 -	chrX	11571578	3` UTR	Kmn1 -	chrX	11571702	3` UTR	Kmn1 -	chrX_4_11570001	chrX_11570001	KT1_1-HE
3022	chrX	11571462	11571485	chrX	11571693	11571727	pogo	7	240	4.0	4.5	4.2	1.3	265	chrX	11571462	3` UTR	Kmn1 -	chrX	11571594	3` UTR	Kmn1 -	chrX	11571727	3` UTR	Kmn1 -	chrX_7_11570001	chrX_11570001	KT1_1-HE
3023	chrX	11633420	11633446	chrX	11640475	11640501	297	19	7055	6.5	9.5	8.0	2.1	7081	chrX	11633420	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640501	intron	Ptp10D +	chrX_19_11635001	chrX_11635001	KT1_1-HE
3024	chrX	11645110	11645140	chrX	11648280	11648311	NOF	8	3170	1.5	7.5	4.5	1.5	3201	chrX	11645110	intron	Ptp10D +	chrX	11646710	intron	Ptp10D +	chrX	11648311	intron	Ptp10D +	chrX_8_11645001	chrX_11645001	KT1_1-HE
3031	chrX	12301955	12301988	chrX	12303262	12303274	X-element	4	1296	1.5	3.0	2.2	1.2	1319	chrX	12301955	intron	Ten-a +	chrX	12302614	intron	Ten-a +	chrX	12303274	intron	Ten-a +	chrX_4_12300001	chrX_12300001	KT1_1-HE
3035	chrX	12381887	12381903	chrX	12385771	12385806	flea	4	3897	1.5	4.5	3.0	1.0	3919	chrX	12381887	intergenic	not near genes	chrX	12383846	intergenic	not near genes	chrX	12385806	intergenic	not near genes	chrX_4_12380001	chrX_12380001	KT1_1-HE
3050	chrX	12930596	12930609	chrX	12937713	12937726	HMS-Beagle	7	7117	2.5	7.0	4.8	1.2	7130	chrX	12930596	intron	fne +	chrX	12934161	intron	fne +	chrX	12937726	intron	fne +	chrX_7_12930001	chrX_12930001	KT1_1-HE
3062	chrX	13401481	13401518	chrX	13401834	13401871	jockey	12	353	3.0	3.5	3.2	2.9	390	chrX	13401481	intergenic	CG1673 +,CG12725 -	chrX	13401676	intergenic	CG12725 -,CG1673 +	chrX	13401871	3` UTR	CG12725 -	chrX_12_13400001	chrX_13400001	KT1_1-HE
3063	chrX	13429460	13429489	chrX	13430609	13430639	jockey	9	1150	1.5	2.0	1.8	3.2	1179	chrX	13429460	intergenic	not near genes	chrX	13430050	intergenic	not near genes	chrX	13430639	intergenic	not near genes	chrX_9_13430001	chrX_13430001	KT1_1-HE
3064	chrX	13463655	13463671	chrX	13469233	13469249	mdg3	6	5578	2.5	3.0	2.8	1.6	5594	chrX	13463655	intron	Neto +	chrX	13466452	intron	Neto +	chrX	13469249	intron	Neto +	chrX_6_13465001	chrX_13465001	KT1_1-HE
3074	chrX	13937986	13938009	chrX	13941250	13941255	I-element	8	3268	1.5	3.5	2.5	2.3	3269	chrX	13937986	intron	mamo -	chrX	13939620	intron	mamo -	chrX	13941255	intron	mamo -	chrX_8_13935001	chrX_13935001	KT1_1-HE
3079	chrX	14105020	14105055	chrX	14114171	14114205	roo	13	9152	2.5	2.0	2.2	4.1	9185	chrX	14105020	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114205	5` UTR	CR44657 +	chrX_13_14105001	chrX_14105001	KT1_1-HE
3082	chrX	14157600	14157611	chrX	14163258	14163269	297	4	5658	0.0	0.5	0.2	3.3	5669	chrX	14157600	intergenic	not near genes	chrX	14160434	intergenic	not near genes	chrX	14163269	intergenic	not near genes	chrX_4_14160001	chrX_14160001	KT1_1-HE
3090	chrX	14416299	14416321	chrX	14421068	14421090	F-element	10	4769	8.0	5.0	6.5	1.3	4791	chrX	14416299	intron	dpr8 +	chrX	14418694	intron	dpr8 +	chrX	14421090	intron	dpr8 +	chrX_10_14415001	chrX_14415001	KT1_1-HE
3094	chrX	14589685	14589706	chrX	14589927	14589948	pogo	8	242	5.0	2.5	3.8	1.7	263	chrX	14589685	intron	CG9413 -	chrX	14589816	intron	CG9413 -	chrX	14589948	intron	CG9413 -	chrX_8_14585001	chrX_14585001	KT1_1-HE
3096	chrX	14636467	14636493	chrX	14641909	14641935	I-element	9	5442	3.0	4.5	3.8	1.9	5468	chrX	14636467	intron	NetA -	chrX	14639201	intron	NetA -	chrX	14641935	intron	NetA -	chrX_9_14635001	chrX_14635001	KT1_1-HE
3101	chrX	14778024	14778059	chrX	14782822	14782857	Doc	12	4798	6.5	1.5	4.0	2.4	4833	chrX	14778024	intergenic	CG5347 +	chrX	14780440	intergenic	not near genes	chrX	14782857	intergenic	Ag5r2 -	chrX_12_14780001	chrX_14780001	KT1_1-HE
3103	chrX	14818768	14818797	chrX	14823972	14824002	copia	10	5204	6.0	5.5	5.8	1.5	5234	chrX	14818768	intron	rut -	chrX	14821385	intron	rut -	chrX	14824002	intron	rut -	chrX_10_14820001	chrX_14820001	KT1_1-HE
3105	chrX	14936844	14936882	chrX	14946116	14946140	roo	6	9263	0.0	0.0	0.0	6.0	9296	chrX	14936844	intron	pdgy -	chrX	14941492	intron	pdgy -	chrX	14946140	intron	pdgy -	chrX_6_14940001	chrX_14940001	KT1_1-HE
3117	chrX	15273703	15273727	chrX	15274871	15274895	1360	11	1167	7.0	5.0	6.0	1.6	1192	chrX	15273703	intergenic	not near genes	chrX	15274299	intergenic	not near genes	chrX	15274895	intergenic	not near genes	chrX_11_15270001	chrX_15270001	KT1_1-HE
3118	chrX	15273731	15273737	chrX	15274868	15274905	1360	4	1160	4.5	4.0	4.2	0.8	1174	chrX	15273731	intergenic	not near genes	chrX	15274318	intergenic	not near genes	chrX	15274905	intergenic	not near genes	chrX_4_15270001	chrX_15270001	KT1_1-HE
3126	chrX	15413047	15413084	chrX	15417350	15417387	Juan	19	4302	8.0	6.0	7.0	2.4	4340	chrX	15413047	intron	Cngl -	chrX	15415217	intron	Cngl -	chrX	15417387	intron	Cngl -	chrX_19_15415001	chrX_15415001	KT1_1-HE
3127	chrX	15421943	15421950	chrX	15423455	15423462	pogo	7	1512	3.0	7.5	5.2	1.1	1519	chrX	15421943	intron	Cngl -	chrX	15422702	intron	Cngl -	chrX	15423462	intron	Cngl -	chrX_7_15420001	chrX_15420001	KT1_1-HE
3129	chrX	15435687	15435705	chrX	15436121	15436139	rover	13	433	0.0	8.5	4.2	2.5	452	chrX	15435687	intron	Cngl -	chrX	15435913	intron	Cngl -	chrX	15436139	intron	Cngl -	chrX_13_15435001	chrX_15435001	KT1_1-HE
3143	chrX	16222775	16222782	chrX	16231155	16231162	roo	5	8380	0.0	4.0	2.0	1.7	8387	chrX	16222775	intergenic	not near genes	chrX	16226968	intergenic	not near genes	chrX	16231162	intergenic	not near genes	chrX_5_16225001	chrX_16225001	KT1_1-HE
3146	chrX	16340689	16340700	chrX	16349847	16349858	roo	5	9158	0.0	2.5	1.2	2.3	9169	chrX	16340689	intergenic	Dsp1 +	chrX	16345274	intergenic	not near genes	chrX	16349858	intergenic	sl +	chrX_5_16345001	chrX_16345001	KT1_1-HE
3150	chrX	16492643	16492678	chrX	16498221	16498256	mdg3	16	5578	6.5	7.0	6.8	2.1	5613	chrX	16492643	intron	para -	chrX	16495450	intron	para -	chrX	16498256	intron	para -	chrX_16_16495001	chrX_16495001	KT1_1-HE
3160	chrX	16936018	16936023	chrX	16936437	16936442	jockey	4	419	0.0	5.5	2.8	1.1	424	chrX	16936018	intron	CG4928 +	chrX	16936230	intron	CG4928 +	chrX	16936442	intron	CG4928 +	chrX_4_16935001	chrX_16935001	KT1_1-HE
3163	chrX	17057933	17057960	chrX	17058175	17058202	pogo	9	242	4.0	3.0	3.5	2.0	269	chrX	17057933	intron	CG45002 -	chrX	17058068	intron	CG45002 -	chrX	17058202	intron	CG45002 -	chrX_9_17055001	chrX_17055001	KT1_1-HE
3168	chrX	17195209	17195232	chrX	17200295	17200318	flea	11	5086	4.5	7.5	6.0	1.6	5109	chrX	17195209	3` UTR	baz +	chrX	17197764	3` UTR	baz +	chrX	17200318	3` UTR	baz +	chrX_11_17195001	chrX_17195001	KT1_1-HE
3176	chrX	17556941	17556973	chrX	17557441	17557447	mdg1	9	490	5.5	4.5	5.0	1.5	506	chrX	17556941	intron	CG43658 -	chrX	17557194	intron	CG43658 -	chrX	17557447	intron	CG43658 -	chrX_9_17555001	chrX_17555001	KT1_1-HE
3183	chrX	17792959	17792982	chrX	17796258	17796281	flea	10	3299	6.0	2.5	4.2	1.9	3322	chrX	17792959	intron	OdsH +	chrX	17794620	intron	OdsH +	chrX	17796281	intron	OdsH +	chrX_10_17790001	chrX_17790001	KT1_1-HE
3195	chrX	18429491	18429513	chrX	18434803	18434825	Transpac	7	5312	3.5	1.5	2.5	2.0	5334	chrX	18429491	intergenic	not near genes	chrX	18432158	intergenic	not near genes	chrX	18434825	intergenic	not near genes	chrX_7_18430001	chrX_18430001	KT1_1-HE
3211	chrX	19060411	19060436	chrX	19065196	19065221	Doc	14	4785	7.0	8.0	7.5	1.6	4810	chrX	19060411	intron	CG14190 +	chrX	19062816	intron	CG14190 +	chrX	19065221	intron	CG14190 +	chrX_14_19060001	chrX_19060001	KT1_1-HE
3219	chrX	19136559	19136584	chrX	19143480	19143482	412	5	6916	2.0	6.5	4.2	1.0	6923	chrX	19136559	intergenic	not near genes	chrX	19140020	intergenic	not near genes	chrX	19143482	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	KT1_1-HE
3226	chrX	19356986	19357015	chrX	19358428	19358428	NOF	9	1439	7.0	0.0	3.5	2.0	1442	chrX	19356986	intron	kek5 +	chrX	19357707	intron	kek5 +	chrX	19358428	intron	kek5 +	chrX_9_19355001	chrX_19355001	KT1_1-HE
3228	chrX	19380167	19380183	chrX	19380410	19380426	pogo	8	243	8.5	9.0	8.8	0.8	259	chrX	19380167	intron	kek5 +	chrX	19380296	intron	kek5 +	chrX	19380426	intron	kek5 +	chrX_8_19380001	chrX_19380001	KT1_1-HE
3232	chrX	19472129	19472159	chrX	19472700	19472730	jockey	9	567	1.0	5.0	3.0	2.2	601	chrX	19472129	intergenic	kek5 +	chrX	19472430	intergenic	not near genes	chrX	19472730	intergenic	not near genes	chrX_9_19470001	chrX_19470001	KT1_1-HE
3242	chrX	19710071	19710104	chrX	19711858	19711891	S-element	17	1787	4.5	6.0	5.2	2.7	1820	chrX	19710071	intron	meso18E -	chrX	19710981	intron	meso18E -	chrX	19711891	intron	meso18E -	chrX_17_19710001	chrX_19710001	KT1_1-HE
3248	chrX	19812740	19812763	chrX	19816029	19816052	Gypsy12A_LTR	11	3289	30.5	17.5	24.0	0.4	3312	chrX	19812740	5` UTR	skpD +	chrX	19814396	intergenic	not near genes	chrX	19816052	intergenic	skpC +	chrX_11_19810001	chrX_19810001	KT1_1-HE
3249	chrX	19821465	19821745	chrX	19821550	19821832	TAHRE	5	85	1.5	0.0	0.8	2.8	367	chrX	19821465	intergenic	not near genes	chrX	19821648	intergenic	not near genes	chrX	19821832	intergenic	not near genes	chrX_5_19820001	chrX_19820001	KT1_1-HE
3271	chrX	20377337	20377349	chrX	20378805	20378817	hobo	5	1467	2.5	3.5	3.0	1.2	1480	chrX	20377337	intergenic	not near genes	chrX	20378077	intergenic	not near genes	chrX	20378817	intergenic	not near genes	chrX_5_20375001	chrX_20375001	KT1_1-HE
3280	chrX	20504123	20504156	chrX	20505645	20505678	transib2	13	1522	9.0	6.0	7.5	1.5	1555	chrX	20504123	intron	RhoGAP19D -	chrX	20504900	intron	RhoGAP19D -	chrX	20505678	intron	RhoGAP19D -	chrX_13_20500001	chrX_20500001	KT1_1-HE
3288	chrX	20836723	20836754	chrX	20844326	20844357	roo	13	7603	0.0	0.0	0.0	13.0	7634	chrX	20836723	intron	shakB -	chrX	20840540	intron	shakB -	chrX	20844357	intron	shakB -	chrX_13_20840001	chrX_20840001	KT1_1-HE
3292	chrX	20940720	20940753	chrX	20942190	20942223	hobo	24	1469	4.0	2.5	3.2	5.7	1503	chrX	20940720	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942223	intergenic	not near genes	chrX_24_20940001	chrX_20940001	KT1_1-HE
3294	chrX	20956990	20957012	chrX	20962433	20962455	I-element	7	5443	0.5	3.5	2.0	2.3	5465	chrX	20956990	intergenic	not near genes	chrX	20959722	intergenic	not near genes	chrX	20962455	intergenic	Ser6 -	chrX_7_20955001	chrX_20955001	KT1_1-HE
3299	chrX	21061862	21061894	chrX	21062348	21062380	roo	6	486	4.0	2.5	3.2	1.4	518	chrX	21061862	intron	bves +	chrX	21062121	intron	bves +	chrX	21062380	intron,3` UTR	bves +,CG32512 -	chrX_6_21060001	chrX_21060001	KT1_1-HE
3300	chrX	21086127	21086164	chrX	21087157	21087187	jockey	24	1028	5.5	2.5	4.0	4.8	1060	chrX	21086127	intergenic	not near genes	chrX	21086657	intergenic	not near genes	chrX	21087187	intergenic	not near genes	chrX_24_21085001	chrX_21085001	KT1_1-HE
3309	chrX	21458694	21458730	chrX	21464131	21464167	Ivk	10	5436	0.0	5.0	2.5	2.9	5473	chrX	21458694	intergenic	not near genes	chrX	21461430	intergenic	not near genes	chrX	21464167	intergenic	not near genes	chrX_10_21460001	chrX_21460001	KT1_1-HE
3310	chrX	21474401	21474433	chrX	21474768	21474800	1731	15	367	3.0	5.0	4.0	3.0	399	chrX	21474401	intergenic	not near genes	chrX	21474600	intergenic	not near genes	chrX	21474800	intergenic	not near genes	chrX_15_21470001	chrX_21470001	KT1_1-HE
3320	chrX	22522631	22522653	chrX	22525452	22525474	NOF	8	2821	4.0	0.5	2.2	2.5	2843	chrX	22522631	intron	CG17600 +	chrX	22524052	intron	CG17600 +	chrX	22525474	intron	CG17600 +	chrX_8_22520001	chrX_22520001	KT1_1-HE
3327	chrX	22697494	22697521	chrX	22701792	22701819	Juan	23	4298	10.5	11.5	11.0	1.9	4325	chrX	22697494	intron	CR44997 +	chrX	22699656	intron	CR44997 +	chrX	22701819	intron	CR44997 +	chrX_23_22695001	chrX_22695001	KT1_1-HE
3329	chrX	22771507	22771538	chrX	22774799	22774830	297	4	3292	3.0	5.0	4.0	0.8	3323	chrX	22771507	intron	CR44997 +	chrX	22773168	intron	CR44997 +	chrX	22774830	intron	CR44997 +	chrX_4_22770001	chrX_22770001	KT1_1-HE
3340	chrX	22987102	22987130	chrX	22989762	22989790	Burdock	6	2658	1.0	1.5	1.2	2.7	2688	chrX	22987102	intron,intron	stnA -,stnB -	chrX	22988446	intron,intron	stnA -,stnB -	chrX	22989790	intron,intron	stnA -,stnB -	chrX_6_22985001	chrX_22985001	KT1_1-HE
3341	chrX	22996314	22996334	chrX	23003548	23003568	roo	8	7234	2.5	4.5	3.5	1.8	7254	chrX	22996314	intron,intron	stnA -,stnB -	chrX	22999941	intron,intron	stnA -,stnB -	chrX	23003568	intron,intron	stnA -,stnB -	chrX_8_22995001	chrX_22995001	KT1_1-HE