SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 2 chr2L 47442 47478 chr2L 52573 52609 jockey 15 5131 9.5 10.5 10.0 1.4 5167 chr2L 47442 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52609 intron Cda5 - chr2L_15_50001 chr2L_50001 EF78_1-HE 9 chr2L 347859 347916 chr2L 355385 355442 blood 10 7526 1.0 0.0 0.5 6.7 7583 chr2L 347859 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355442 3` UTR Plc21C + chr2L_10_350001 chr2L_350001 EF78_1-HE 20 chr2L 686926 686942 chr2L 695991 696008 roo 7 9065 2.0 7.5 4.8 1.2 9082 chr2L 686926 intron ds - chr2L 691467 intron ds - chr2L 696008 intron ds - chr2L_7_690001 chr2L_690001 EF78_1-HE 23 chr2L 770440 770486 chr2L 772247 772293 Bari1 11 1806 0.5 3.5 2.0 3.7 1853 chr2L 770440 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772293 intergenic CR44614 + chr2L_11_770001 chr2L_770001 EF78_1-HE 32 chr2L 976854 976909 chr2L 984516 984571 roo 14 7662 7.0 4.5 5.8 2.1 7717 chr2L 976854 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984571 intergenic not near genes chr2L_14_980001 chr2L_980001 EF78_1-HE 34 chr2L 996716 996746 chr2L 1005825 1005867 roo 5 9119 1.5 2.0 1.8 1.8 9151 chr2L 996716 intergenic not near genes chr2L 1001292 intergenic not near genes chr2L 1005867 intergenic not near genes chr2L_5_1000001 chr2L_1000001 EF78_1-HE 40 chr2L 1220102 1220160 chr2L 1227594 1227652 blood 13 7488 4.5 0.0 2.2 4.1 7550 chr2L 1220102 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227652 intron CG42329 + chr2L_13_1220001 chr2L_1220001 EF78_1-HE 49 chr2L 1570679 1570717 chr2L 1573574 1573615 F-element 19 2898 8.0 11.0 9.5 1.8 2936 chr2L 1570679 intron haf + chr2L 1572147 intron haf + chr2L 1573615 intron haf + chr2L_19_1570001 chr2L_1570001 EF78_1-HE 54 chr2L 1678957 1679004 chr2L 1686448 1686495 blood 13 7490 3.5 10.5 7.0 1.6 7538 chr2L 1678957 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686495 intron chinmo + chr2L_13_1680001 chr2L_1680001 EF78_1-HE 56 chr2L 1711344 1711385 chr2L 1711693 1711735 mdg3 7 349 1.0 4.0 2.5 2.0 391 chr2L 1711344 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711540 3` UTR frtz - chr2L 1711735 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 EF78_1-HE 69 chr2L 2100383 2100405 chr2L 2109547 2109551 roo 6 9161 7.5 6.0 6.8 0.8 9168 chr2L 2100383 intron dpr3 - chr2L 2104967 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_6_2100001 chr2L_2100001 EF78_1-HE 70 chr2L 2112099 2112139 chr2L 2119787 2119827 opus 8 7687 2.0 2.0 2.0 2.7 7728 chr2L 2112099 intergenic not near genes chr2L 2115963 intergenic not near genes chr2L 2119827 intergenic not near genes chr2L_8_2115001 chr2L_2115001 EF78_1-HE 75 chr2L 2294020 2294072 chr2L 2299251 2299278 copia 18 5229 1.0 5.5 3.2 4.3 5258 chr2L 2294020 intergenic not near genes chr2L 2296649 intergenic not near genes chr2L 2299278 intergenic not near genes chr2L_18_2295001 chr2L_2295001 EF78_1-HE 84 chr2L 2565531 2565561 chr2L 2571630 2571657 297 5 6098 3.0 2.5 2.8 1.3 6126 chr2L 2565531 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571657 exon Cyp309a2 - chr2L_5_2565001 chr2L_2565001 EF78_1-HE 88 chr2L 2661180 2661225 chr2L 2663044 2663089 I-element 7 1859 2.0 4.0 3.0 1.8 1909 chr2L 2661180 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663089 intergenic not near genes chr2L_7_2660001 chr2L_2660001 EF78_1-HE 89 chr2L 2661227 2661227 chr2L 2663039 2663091 I-element 4 1836 2.0 3.0 2.5 1.1 1864 chr2L 2661227 intergenic not near genes chr2L 2662159 intergenic not near genes chr2L 2663091 intergenic not near genes chr2L_4_2660001 chr2L_2660001 EF78_1-HE 101 chr2L 2933284 2933324 chr2L 2935479 2935527 pogo 14 2202 6.5 4.0 5.2 2.3 2243 chr2L 2933284 intron lilli + chr2L 2934406 intron lilli + chr2L 2935527 intron lilli + chr2L_14_2930001 chr2L_2930001 EF78_1-HE 109 chr2L 3202720 3202770 chr2L 3210175 3210225 mdg1 13 7455 1.5 0.0 0.8 7.2 7505 chr2L 3202720 intergenic not near genes chr2L 3206472 intergenic not near genes chr2L 3210225 intergenic CR45336 + chr2L_13_3205001 chr2L_3205001 EF78_1-HE 111 chr2L 3251472 3251520 chr2L 3259063 3259111 springer 8 7591 2.0 4.0 3.0 2.0 7639 chr2L 3251472 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259111 intergenic not near genes chr2L_8_3255001 chr2L_3255001 EF78_1-HE 117 chr2L 3388575 3388627 chr2L 3388842 3388894 pogo 16 266 4.5 1.5 3.0 4.0 319 chr2L 3388575 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388894 intergenic CG42460 -,CR44791 + chr2L_16_3385001 chr2L_3385001 EF78_1-HE 131 chr2L 3649770 3649806 chr2L 3654998 3655034 copia 12 5227 4.0 4.0 4.0 2.4 5264 chr2L 3649770 intron for - chr2L 3652402 intron for - chr2L 3655034 intron for - chr2L_12_3650001 chr2L_3650001 EF78_1-HE 145 chr2L 4066018 4066045 chr2L 4068868 4068896 Juan 7 2851 9.0 0.5 4.8 1.2 2878 chr2L 4066018 intron ed + chr2L 4067457 intron ed + chr2L 4068896 intron ed + chr2L_7_4065001 chr2L_4065001 EF78_1-HE 164 chr2L 4601681 4601734 chr2L 4609148 4609201 mdg1 9 7467 3.0 1.0 2.0 3.0 7520 chr2L 4601681 intron dp - chr2L 4605441 intron dp - chr2L 4609201 intron dp - chr2L_9_4605001 chr2L_4605001 EF78_1-HE 191 chr2L 5827712 5827731 chr2L 5836746 5836765 roo 7 9034 8.5 5.0 6.8 0.9 9053 chr2L 5827712 intron TrissinR + chr2L 5832238 intron TrissinR + chr2L 5836765 intron TrissinR + chr2L_7_5830001 chr2L_5830001 EF78_1-HE 210 chr2L 6363128 6363178 chr2L 6366080 6366118 Burdock 9 2951 2.5 3.0 2.8 2.4 2990 chr2L 6363128 intergenic not near genes chr2L 6364623 intergenic not near genes chr2L 6366118 intergenic not near genes chr2L_9_6360001 chr2L_6360001 EF78_1-HE 212 chr2L 6426837 6426884 chr2L 6445123 6445170 roo 7 18281 0.0 1.5 0.8 3.9 18333 chr2L 6426837 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445170 exon CG9527 - chr2L_7_6435001 chr2L_6435001 EF78_1-HE 228 chr2L 6876757 6876799 chr2L 6882974 6883016 diver 7 6214 3.5 6.0 4.8 1.2 6259 chr2L 6876757 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6883016 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 EF78_1-HE 249 chr2L 7343305 7343357 chr2L 7350443 7350472 roo 14 7140 5.5 11.0 8.2 1.5 7167 chr2L 7343305 intron Wnt6 + chr2L 7346888 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_14_7345001 chr2L_7345001 EF78_1-HE 269 chr2L 7977058 7977110 chr2L 7984058 7984110 297 8 7000 2.5 2.0 2.2 2.5 7052 chr2L 7977058 intron Snoo - chr2L 7980584 intron Snoo - chr2L 7984110 intron,5` UTR Snoo -,CG7231 + chr2L_8_7980001 chr2L_7980001 EF78_1-HE 283 chr2L 8452401 8452449 chr2L 8461597 8461646 roo 15 9197 5.0 2.5 3.8 3.1 9245 chr2L 8452401 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461646 intron fu12 - chr2L_15_8455001 chr2L_8455001 EF78_1-HE 292 chr2L 8723090 8723143 chr2L 8731493 8731546 Tirant 18 8403 2.5 4.5 3.5 4.0 8456 chr2L 8723090 intron raw - chr2L 8727318 intron raw - chr2L 8731546 intron raw - chr2L_18_8725001 chr2L_8725001 EF78_1-HE 302 chr2L 9000269 9000301 chr2L 9007805 9007837 roo 8 7536 6.5 0.0 3.2 1.9 7568 chr2L 9000269 intergenic Try29F + chr2L 9004053 intergenic not near genes chr2L 9007837 intergenic not near genes chr2L_8_9000001 chr2L_9000001 EF78_1-HE 320 chr2L 9393473 9393519 chr2L 9396466 9396512 jockey 15 2993 2.5 4.0 3.2 3.6 3039 chr2L 9393473 intron Shawl - chr2L 9394992 intron Shawl - chr2L 9396512 intron Shawl - chr2L_15_9390001 chr2L_9390001 EF78_1-HE 332 chr2L 9973703 9973756 chr2L 9980848 9980901 HMS-Beagle 13 7144 5.0 7.5 6.2 1.8 7198 chr2L 9973703 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980901 intergenic not near genes chr2L_13_9975001 chr2L_9975001 EF78_1-HE 341 chr2L 10156295 10156353 chr2L 10163790 10163849 blood 9 7496 2.0 4.5 3.2 2.1 7554 chr2L 10156295 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163849 intron CG44153 - chr2L_9_10160001 chr2L_10160001 EF78_1-HE 352 chr2L 10592821 10592872 chr2L 10600509 10600560 opus 19 7688 5.5 6.0 5.8 2.8 7739 chr2L 10592821 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600560 intron Trim9 + chr2L_19_10595001 chr2L_10595001 EF78_1-HE 364 chr2L 10862833 10862840 chr2L 10864473 10864480 Rt1c 4 1640 8.5 4.5 6.5 0.5 1647 chr2L 10862833 3` UTR CR43807 - chr2L 10863656 intron CR43807 - chr2L 10864480 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 EF78_1-HE 365 chr2L 10862846 10862867 chr2L 10864458 10864507 Rt1c 6 1635 4.0 2.0 3.0 1.5 1661 chr2L 10862846 3` UTR CR43807 - chr2L 10863676 intron CR43807 - chr2L 10864507 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 EF78_1-HE 370 chr2L 10946938 10946972 chr2L 10956177 10956213 roo 11 9241 4.0 10.0 7.0 1.4 9275 chr2L 10946938 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956213 intron dpr2 - chr2L_11_10950001 chr2L_10950001 EF78_1-HE 376 chr2L 11315243 11315268 chr2L 11317673 11317698 G2 8 2430 1.0 0.0 0.5 5.3 2455 chr2L 11315243 intergenic not near genes chr2L 11316470 intergenic not near genes chr2L 11317698 intergenic not near genes chr2L_8_11315001 chr2L_11315001 EF78_1-HE 386 chr2L 11540570 11540611 chr2L 11547986 11548039 Tabor 8 7425 3.5 3.5 3.5 1.8 7469 chr2L 11540570 intergenic not near genes chr2L 11544304 intergenic not near genes chr2L 11548039 intergenic not near genes chr2L_8_11540001 chr2L_11540001 EF78_1-HE 387 chr2L 11563609 11563624 chr2L 11568839 11568854 copia 5 5230 6.0 0.0 3.0 1.2 5245 chr2L 11563609 intergenic not near genes chr2L 11566232 intergenic not near genes chr2L 11568854 intergenic not near genes chr2L_5_11565001 chr2L_11565001 EF78_1-HE 388 chr2L 11614028 11614083 chr2L 11615549 11615604 hopper2 13 1520 6.5 4.0 5.2 2.1 1576 chr2L 11614028 intron kek2 + chr2L 11614816 intron kek2 + chr2L 11615604 intron kek2 + chr2L_13_11610001 chr2L_11610001 EF78_1-HE 392 chr2L 11713486 11713536 chr2L 11720979 11721030 blood 13 7493 3.0 2.5 2.8 3.4 7544 chr2L 11713486 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721030 intergenic CR44143 + chr2L_13_11715001 chr2L_11715001 EF78_1-HE 402 chr2L 12067318 12067344 chr2L 12074396 12074422 297 4 7078 3.5 5.0 4.2 0.8 7104 chr2L 12067318 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074422 intergenic not near genes chr2L_4_12070001 chr2L_12070001 EF78_1-HE 421 chr2L 12558294 12558343 chr2L 12565449 12565498 HMS-Beagle 7 7154 3.5 3.5 3.5 1.6 7204 chr2L 12558294 intergenic not near genes chr2L 12561896 intergenic not near genes chr2L 12565498 intergenic not near genes chr2L_7_12560001 chr2L_12560001 EF78_1-HE 425 chr2L 12728894 12728941 chr2L 12729163 12729208 pogo 15 266 5.5 6.5 6.0 2.1 314 chr2L 12728894 intron MRP + chr2L 12729051 intron MRP + chr2L 12729208 exon MRP + chr2L_15_12725001 chr2L_12725001 EF78_1-HE 426 chr2L 12731041 12731087 chr2L 12735834 12735880 F-element 13 4791 6.5 3.5 5.0 2.2 4839 chr2L 12731041 intron MRP + chr2L 12733460 intron MRP + chr2L 12735880 intron MRP + chr2L_13_12730001 chr2L_12730001 EF78_1-HE 428 chr2L 12739152 12739202 chr2L 12743959 12744009 Doc 13 4807 5.0 6.0 5.5 2.0 4857 chr2L 12739152 exon MRP + chr2L 12741580 intron MRP + chr2L 12744009 exon MRP + chr2L_13_12740001 chr2L_12740001 EF78_1-HE 429 chr2L 12763803 12763814 chr2L 12764041 12764052 BS 10 236 5.0 0.0 2.5 2.9 249 chr2L 12763803 intergenic not near genes chr2L 12763928 intergenic not near genes chr2L 12764052 intergenic not near genes chr2L_10_12760001 chr2L_12760001 EF78_1-HE 431 chr2L 12781776 12781801 chr2L 12789245 12789270 Quasimodo 10 7469 17.5 9.0 13.2 0.7 7494 chr2L 12781776 intergenic not near genes chr2L 12785523 intergenic not near genes chr2L 12789270 intergenic not near genes chr2L_10_12785001 chr2L_12785001 EF78_1-HE 432 chr2L 12791585 12791624 chr2L 12795284 12795325 F-element 23 3699 4.0 6.0 5.0 3.8 3740 chr2L 12791585 intergenic not near genes chr2L 12793455 intergenic not near genes chr2L 12795325 intergenic not near genes chr2L_23_12790001 chr2L_12790001 EF78_1-HE 434 chr2L 12861683 12861726 chr2L 12863176 12863219 hobo 8 1492 3.0 5.5 4.2 1.5 1536 chr2L 12861683 intergenic not near genes chr2L 12862451 intergenic not near genes chr2L 12863219 intergenic not near genes chr2L_8_12860001 chr2L_12860001 EF78_1-HE 435 chr2L 12894009 12894015 chr2L 12895492 12895507 hobo 4 1490 7.5 6.5 7.0 0.5 1498 chr2L 12894009 intergenic not near genes chr2L 12894758 intergenic not near genes chr2L 12895507 intergenic not near genes chr2L_4_12890001 chr2L_12890001 EF78_1-HE 436 chr2L 12894016 12894042 chr2L 12895488 12895535 hobo 4 1488 3.5 6.0 4.8 0.7 1519 chr2L 12894016 intergenic not near genes chr2L 12894776 intergenic not near genes chr2L 12895535 intergenic not near genes chr2L_4_12890001 chr2L_12890001 EF78_1-HE 437 chr2L 12933836 12933880 chr2L 12941329 12941373 blood 14 7492 4.5 8.0 6.2 1.9 7537 chr2L 12933836 intergenic not near genes chr2L 12937604 intergenic not near genes chr2L 12941373 intergenic not near genes chr2L_14_12935001 chr2L_12935001 EF78_1-HE 439 chr2L 13036221 13036252 chr2L 13036489 13036520 X-element 11 267 6.0 5.5 5.8 1.6 299 chr2L 13036221 intron CG9932 - chr2L 13036370 intron CG9932 - chr2L 13036520 intron CG9932 - chr2L_11_13035001 chr2L_13035001 EF78_1-HE 446 chr2L 13449442 13449491 chr2L 13456904 13456953 Quasimodo 7 7459 2.5 5.0 3.8 1.5 7511 chr2L 13449442 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453198 intron CG42784 + chr2L 13456953 intron CG42784 + chr2L_7_13450001 chr2L_13450001 EF78_1-HE 448 chr2L 13481426 13481468 chr2L 13482059 13482101 jockey 19 633 13.0 10.5 11.8 1.5 675 chr2L 13481426 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482101 intron CG42784 + chr2L_19_13480001 chr2L_13480001 EF78_1-HE 450 chr2L 13522264 13522279 chr2L 13527594 13527600 Transpac 4 5329 2.5 6.5 4.5 0.7 5336 chr2L 13522264 intron B4 - chr2L 13524932 intron B4 - chr2L 13527600 intron B4 - chr2L_4_13520001 chr2L_13520001 EF78_1-HE 451 chr2L 13560383 13560421 chr2L 13565230 13565268 F-element 6 4847 3.0 6.5 4.8 1.0 4885 chr2L 13560383 intron kuz + chr2L 13562826 intron kuz + chr2L 13565268 intron kuz + chr2L_6_13560001 chr2L_13560001 EF78_1-HE 458 chr2L 13761786 13761835 chr2L 13762923 13762971 Doc 11 1136 4.5 4.0 4.2 2.1 1185 chr2L 13761786 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762971 intron TM9SF4 + chr2L_11_13760001 chr2L_13760001 EF78_1-HE 460 chr2L 13853068 13853113 chr2L 13862244 13862289 roo 14 9176 4.5 0.0 2.2 4.4 9221 chr2L 13853068 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862289 intron CenG1A + chr2L_14_13855001 chr2L_13855001 EF78_1-HE 475 chr2L 14465567 14465616 chr2L 14469056 14469099 hopper2 9 3487 0.0 1.5 0.8 5.0 3532 chr2L 14465567 intergenic not near genes chr2L 14467333 intergenic not near genes chr2L 14469099 intergenic not near genes chr2L_9_14465001 chr2L_14465001 EF78_1-HE 477 chr2L 14642542 14642575 chr2L 14651731 14651764 roo 4 9189 6.0 3.0 4.5 0.7 9222 chr2L 14642542 intron osp - chr2L 14647153 intron osp - chr2L 14651764 intron osp - chr2L_4_14645001 chr2L_14645001 EF78_1-HE 481 chr2L 14803859 14803910 chr2L 14809088 14809126 copia 14 5227 5.5 4.0 4.8 2.4 5267 chr2L 14803859 intergenic not near genes chr2L 14806492 intergenic not near genes chr2L 14809126 intergenic not near genes chr2L_14_14805001 chr2L_14805001 EF78_1-HE 484 chr2L 14889928 14889983 chr2L 14890379 14890407 jockey 13 449 5.0 5.5 5.2 2.1 479 chr2L 14889928 intergenic not near genes chr2L 14890168 intergenic not near genes chr2L 14890407 intergenic not near genes chr2L_13_14890001 chr2L_14890001 EF78_1-HE 488 chr2L 14984362 14984392 chr2L 14991990 14992020 opus 6 7628 7.0 4.5 5.8 0.9 7658 chr2L 14984362 intron mol - chr2L 14988191 intron mol - chr2L 14992020 intron mol - chr2L_6_14985001 chr2L_14985001 EF78_1-HE 507 chr2L 15446028 15446069 chr2L 15453523 15453564 blood 6 7495 5.0 2.0 3.5 1.3 7536 chr2L 15446028 intergenic not near genes chr2L 15449796 intergenic not near genes chr2L 15453564 intergenic not near genes chr2L_6_15445001 chr2L_15445001 EF78_1-HE 515 chr2L 15586397 15586438 chr2L 15593475 15593516 297 15 7078 2.5 2.5 2.5 4.3 7119 chr2L 15586397 intergenic not near genes chr2L 15589956 intergenic not near genes chr2L 15593516 intergenic not near genes chr2L_15_15585001 chr2L_15585001 EF78_1-HE 520 chr2L 15826869 15826880 chr2L 15829289 15829300 Tabor 4 2420 1.5 5.5 3.5 0.9 2431 chr2L 15826869 intergenic not near genes chr2L 15828084 intergenic not near genes chr2L 15829300 intergenic not near genes chr2L_4_15825001 chr2L_15825001 EF78_1-HE 522 chr2L 15956006 15956051 chr2L 15957490 15957544 hobo 9 1492 8.0 4.0 6.0 1.3 1538 chr2L 15956006 intron beat-Ib - chr2L 15956775 intron beat-Ib - chr2L 15957544 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 EF78_1-HE 534 chr2L 16141172 16141194 chr2L 16146405 16146427 copia 9 5233 0.0 11.5 5.8 1.3 5255 chr2L 16141172 intergenic not near genes chr2L 16143800 intergenic not near genes chr2L 16146427 intergenic not near genes chr2L_9_16140001 chr2L_16140001 EF78_1-HE 535 chr2L 16153708 16153765 chr2L 16160788 16160845 297 22 7080 5.0 7.5 6.2 3.1 7137 chr2L 16153708 intergenic not near genes chr2L 16157276 intergenic not near genes chr2L 16160845 intergenic not near genes chr2L_22_16155001 chr2L_16155001 EF78_1-HE 538 chr2L 16280239 16280270 chr2L 16281425 16281467 1360 8 1196 3.5 4.0 3.8 1.7 1228 chr2L 16280239 intron crp - chr2L 16280853 intron crp - chr2L 16281467 intron crp - chr2L_8_16280001 chr2L_16280001 EF78_1-HE 547 chr2L 16511786 16511827 chr2L 16519219 16519260 HMS-Beagle 7 7433 2.5 2.5 2.5 2.0 7474 chr2L 16511786 intron CG5953 - chr2L 16515523 intron CG5953 - chr2L 16519260 intron CG5953 - chr2L_7_16515001 chr2L_16515001 EF78_1-HE 556 chr2L 16958080 16958105 chr2L 16962894 16962919 Doc 9 4814 9.5 4.5 7.0 1.1 4839 chr2L 16958080 intergenic not near genes chr2L 16960500 intergenic not near genes chr2L 16962919 intergenic not near genes chr2L_9_16960001 chr2L_16960001 EF78_1-HE 557 chr2L 16958107 16958132 chr2L 16962889 16962946 Doc 7 4807 5.0 3.5 4.2 1.3 4839 chr2L 16958107 intergenic not near genes chr2L 16960526 intergenic not near genes chr2L 16962946 intergenic not near genes chr2L_7_16960001 chr2L_16960001 EF78_1-HE 566 chr2L 17167551 17167589 chr2L 17167818 17167856 pogo 5 267 6.5 4.0 5.2 0.8 305 chr2L 17167551 intron,intron CG34106 +,beat-IIIa + chr2L 17167704 intron,intron CG34106 +,beat-IIIa + chr2L 17167856 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 EF78_1-HE 567 chr2L 17199140 17199182 chr2L 17200633 17200675 hobo 11 1493 5.5 4.5 5.0 1.8 1535 chr2L 17199140 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200675 intron beat-IIIc - chr2L_11_17195001 chr2L_17195001 EF78_1-HE 572 chr2L 17273173 17273221 chr2L 17277973 17278030 F-element 15 4808 1.0 2.5 1.8 5.4 4857 chr2L 17273173 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278030 intergenic not near genes chr2L_15_17275001 chr2L_17275001 EF78_1-HE 579 chr2L 17335529 17335580 chr2L 17336720 17336764 1360 8 1178 2.5 3.5 3.0 2.0 1235 chr2L 17335529 intergenic not near genes chr2L 17336146 intergenic not near genes chr2L 17336764 intergenic not near genes chr2L_8_17335001 chr2L_17335001 EF78_1-HE 592 chr2L 17687498 17687516 chr2L 17692267 17692287 F-element 6 4771 5.5 5.0 5.2 1.0 4789 chr2L 17687498 intron CadN - chr2L 17689892 intron CadN - chr2L 17692287 intron CadN - chr2L_6_17685001 chr2L_17685001 EF78_1-HE 594 chr2L 17727846 17727853 chr2L 17729338 17729340 hobo 6 1492 10.5 11.0 10.8 0.5 1494 chr2L 17727846 intron CadN - chr2L 17728593 intron CadN - chr2L 17729340 intron CadN - chr2L_6_17725001 chr2L_17725001 EF78_1-HE 595 chr2L 17727860 17727878 chr2L 17729335 17729367 hobo 7 1487 7.0 11.0 9.0 0.7 1507 chr2L 17727860 intron CadN - chr2L 17728614 intron CadN - chr2L 17729367 intron CadN - chr2L_7_17725001 chr2L_17725001 EF78_1-HE 600 chr2L 17819905 17819946 chr2L 17825130 17825175 copia 13 5228 2.5 6.5 4.5 2.4 5270 chr2L 17819905 intron CadN2 - chr2L 17822540 intron CadN2 - chr2L 17825175 intron CadN2 - chr2L_13_17820001 chr2L_17820001 EF78_1-HE 602 chr2L 17911944 17911982 chr2L 17914148 17914186 pogo 9 2204 5.5 4.0 4.8 1.6 2242 chr2L 17911944 intergenic not near genes chr2L 17913065 intergenic not near genes chr2L 17914186 intergenic CG43271 - chr2L_9_17910001 chr2L_17910001 EF78_1-HE 606 chr2L 17951921 17951974 chr2L 17953414 17953467 hobo 13 1493 3.5 2.0 2.8 3.4 1546 chr2L 17951921 intergenic CR44398 -,CR44397 - chr2L 17952694 intergenic not near genes chr2L 17953467 intergenic not near genes chr2L_13_17950001 chr2L_17950001 EF78_1-HE 613 chr2L 18051866 18051903 chr2L 18061038 18061076 roo 10 9173 5.5 8.0 6.8 1.3 9210 chr2L 18051866 intron rdo + chr2L 18056471 intron rdo + chr2L 18061076 intron rdo + chr2L_10_18055001 chr2L_18055001 EF78_1-HE 625 chr2L 18408004 18408017 chr2L 18412813 18412827 Doc 4 4810 6.0 0.0 3.0 1.0 4823 chr2L 18408004 intergenic not near genes chr2L 18410416 intergenic not near genes chr2L 18412827 intergenic not near genes chr2L_4_18410001 chr2L_18410001 EF78_1-HE 647 chr2L 19147344 19147389 chr2L 19154405 19154450 297 19 7060 6.5 6.0 6.2 2.6 7106 chr2L 19147344 intron brat + chr2L 19150897 intron brat + chr2L 19154450 intron brat + chr2L_19_19150001 chr2L_19150001 EF78_1-HE 656 chr2L 19345006 19345037 chr2L 19357241 19357272 blood 4 12229 4.5 7.0 5.8 0.6 12266 chr2L 19345006 intron dnt - chr2L 19351139 intron dnt - chr2L 19357272 intron dnt - chr2L_4_19350001 chr2L_19350001 EF78_1-HE 657 chr2L 19345040 19345043 chr2L 19357236 19357277 blood 4 12225 4.5 6.5 5.5 0.6 12237 chr2L 19345040 intron dnt - chr2L 19351158 intron dnt - chr2L 19357277 intron dnt - chr2L_4_19350001 chr2L_19350001 EF78_1-HE 668 chr2L 19620066 19620121 chr2L 19621081 19621136 jockey 20 1013 6.5 4.5 5.5 3.1 1070 chr2L 19620066 intron Lar + chr2L 19620601 intron Lar + chr2L 19621136 intron Lar + chr2L_20_19620001 chr2L_19620001 EF78_1-HE 670 chr2L 19652551 19652592 chr2L 19674013 19674054 opus 14 21462 4.5 5.0 4.8 2.4 21503 chr2L 19652551 intron Lar + chr2L 19663302 intron Lar + chr2L 19674054 intron Lar + chr2L_14_19660001 chr2L_19660001 EF78_1-HE 671 chr2L 19703514 19703567 chr2L 19712676 19712729 roo 19 9162 8.0 9.5 8.8 1.9 9215 chr2L 19703514 intron Lar + chr2L 19708122 intron Lar + chr2L 19712729 intron Lar + chr2L_19_19705001 chr2L_19705001 EF78_1-HE 674 chr2L 19737328 19737382 chr2L 19740823 19740877 1360 11 3494 1.5 2.5 2.0 3.7 3549 chr2L 19737328 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740877 intergenic not near genes chr2L_11_19735001 chr2L_19735001 EF78_1-HE 675 chr2L 19762792 19762834 chr2L 19763060 19763102 pogo 6 268 3.0 3.0 3.0 1.5 310 chr2L 19762792 5` UTR fbp - chr2L 19762947 intron fbp - chr2L 19763102 intron fbp - chr2L_6_19760001 chr2L_19760001 EF78_1-HE 681 chr2L 20005851 20005902 chr2L 20010953 20010992 flea 13 5101 2.5 4.5 3.5 2.9 5141 chr2L 20005851 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010992 intron CG43861 - chr2L_13_20005001 chr2L_20005001 EF78_1-HE 683 chr2L 20117966 20118009 chr2L 20119558 20119601 1360 20 1591 7.5 2.5 5.0 3.3 1635 chr2L 20117966 intergenic not near genes chr2L 20118784 intergenic not near genes chr2L 20119601 intergenic not near genes chr2L_20_20115001 chr2L_20115001 EF78_1-HE 687 chr2L 20272090 20272142 chr2L 20282827 20282879 copia 28 10737 3.5 3.5 3.5 6.2 10789 chr2L 20272090 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282879 intergenic not near genes chr2L_28_20275001 chr2L_20275001 EF78_1-HE 692 chr2L 20303159 20303183 chr2L 20310653 20310677 blood 9 7494 0.0 6.0 3.0 2.2 7518 chr2L 20303159 intergenic not near genes chr2L 20306918 intergenic not near genes chr2L 20310677 intergenic not near genes chr2L_9_20305001 chr2L_20305001 EF78_1-HE 694 chr2L 20372209 20372255 chr2L 20372469 20372515 pogo 15 259 0.0 3.5 1.8 5.4 306 chr2L 20372209 intergenic Ugt37a1 - chr2L 20372362 intergenic Ugt37a1 - chr2L 20372515 exon Ugt37a1 - chr2L_15_20370001 chr2L_20370001 EF78_1-HE 701 chr2L 20568641 20568679 chr2L 20569057 20569095 X-element 14 416 3.0 2.5 2.8 3.7 454 chr2L 20568641 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569095 intron CR45347 + chr2L_14_20565001 chr2L_20565001 EF78_1-HE 702 chr2L 20576203 20576252 chr2L 20583697 20583746 blood 8 7494 1.0 2.5 1.8 2.9 7543 chr2L 20576203 intergenic CR45347 + chr2L 20579974 intergenic not near genes chr2L 20583746 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 EF78_1-HE 703 chr2L 20639474 20639528 chr2L 20639776 20639830 INE-1 10 300 2.5 3.0 2.8 2.6 356 chr2L 20639474 intergenic not near genes chr2L 20639652 intergenic CG31680 + chr2L 20639830 intergenic CG31680 + chr2L_10_20635001 chr2L_20635001 EF78_1-HE 707 chr2L 20835788 20835830 chr2L 20836528 20836571 Quasimodo 5 741 7.0 5.5 6.2 0.7 783 chr2L 20835788 5` UTR Oseg5 - chr2L 20836180 intergenic Oseg5 -,Spn38F - chr2L 20836571 intergenic Spn38F - chr2L_5_20835001 chr2L_20835001 EF78_1-HE 709 chr2L 20891526 20891536 chr2L 20896652 20896663 jockey 4 5127 4.5 4.0 4.2 0.8 5137 chr2L 20891526 intron,intron CG43739 -,sky - chr2L 20894094 intron,intron CG43739 -,sky - chr2L 20896663 intron,intron CG43739 -,sky - chr2L_4_20890001 chr2L_20890001 EF78_1-HE 711 chr2L 20901436 20901477 chr2L 20902626 20902667 1360 11 1190 4.5 5.0 4.8 1.9 1231 chr2L 20901436 intron,intron CG43739 -,sky - chr2L 20902052 intron,intron CG43739 -,sky - chr2L 20902667 intron,intron CG43739 -,sky - chr2L_11_20900001 chr2L_20900001 EF78_1-HE 713 chr2L 20976646 20976661 chr2L 20981487 20981502 X-element 4 4841 2.0 1.0 1.5 1.6 4856 chr2L 20976646 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981502 intron CG42238 - chr2L_4_20975001 chr2L_20975001 EF78_1-HE 714 chr2L 21020253 21020294 chr2L 21023956 21023996 NOF 13 3701 4.5 5.5 5.0 2.2 3743 chr2L 21020253 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023996 intron CG42238 - chr2L_13_21020001 chr2L_21020001 EF78_1-HE 715 chr2L 21041116 21041165 chr2L 21049403 21049450 Tirant 18 8287 3.0 7.0 5.0 3.0 8334 chr2L 21041116 intron CG42238 - chr2L 21045283 intron CG42238 - chr2L 21049450 intron CG42238 - chr2L_18_21045001 chr2L_21045001 EF78_1-HE 720 chr2L 21347558 21347570 chr2L 21355056 21355067 blood 4 7498 4.0 4.0 4.0 0.8 7509 chr2L 21347558 intron Tsp39D + chr2L 21351312 intron Tsp39D + chr2L 21355067 intron Tsp39D + chr2L_4_21350001 chr2L_21350001 EF78_1-HE 722 chr2L 21597025 21597058 chr2L 21604795 21604828 roo 13 7770 3.0 4.0 3.5 2.9 7803 chr2L 21597025 intergenic not near genes chr2L 21600926 intergenic not near genes chr2L 21604828 intergenic not near genes chr2L_13_21600001 chr2L_21600001 EF78_1-HE 724 chr2L 21653167 21653220 chr2L 21656497 21656550 invader4 14 3330 2.0 2.0 2.0 4.7 3383 chr2L 21653167 intergenic not near genes chr2L 21654858 intergenic not near genes chr2L 21656550 intergenic not near genes chr2L_14_21650001 chr2L_21650001 EF78_1-HE 730 chr2L 21872703 21872715 chr2L 21872987 21872999 INE-1 5 284 8.5 4.0 6.2 0.7 296 chr2L 21872703 intergenic not near genes chr2L 21872851 intergenic not near genes chr2L 21872999 intergenic not near genes chr2L_5_21870001 chr2L_21870001 EF78_1-HE 732 chr2L 21981664 21981704 chr2L 21990855 21990891 roo 16 9191 5.5 6.0 5.8 2.4 9227 chr2L 21981664 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990891 exon CG2528 - chr2L_16_21985001 chr2L_21985001 EF78_1-HE 738 chr2L 22258584 22258632 chr2L 22260735 22260783 G6 10 2150 4.0 4.0 4.0 2.0 2199 chr2L 22258584 intergenic Tif-IA + chr2L 22259684 intergenic not near genes chr2L 22260783 intergenic not near genes chr2L_10_22255001 chr2L_22255001 EF78_1-HE 740 chr2L 22548922 22548928 chr2L 22550173 22550179 1360 4 1251 0.5 6.0 3.2 1.0 1257 chr2L 22548922 intergenic CG17490 + chr2L 22549550 intergenic not near genes chr2L 22550179 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 EF78_1-HE 741 chr2L 22776396 22776447 chr2L 22778211 22778262 S-element 6 1815 2.5 2.0 2.2 1.9 1866 chr2L 22776396 intergenic not near genes chr2L 22777329 intergenic not near genes chr2L 22778262 intergenic not near genes chr2L_6_22775001 chr2L_22775001 EF78_1-HE 744 chr2R 469937 469979 chr2R 473204 473246 F-element 7 3267 3.0 2.5 2.8 1.8 3309 chr2R 469937 intergenic not near genes chr2R 471592 intergenic not near genes chr2R 473246 intergenic not near genes chr2R_7_470001 chr2R_470001 EF78_1-HE 746 chr2R 529323 529350 chr2R 537968 538001 Max-element 4 8648 0.0 2.0 1.0 2.0 8678 chr2R 529323 intron CG40378 + chr2R 533662 intron CG40378 + chr2R 538001 intron CG40378 + chr2R_4_530001 chr2R_530001 EF78_1-HE 747 chr2R 552726 552779 chr2R 553970 554023 1360 15 1242 1.5 5.0 3.2 3.6 1297 chr2R 552726 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 554023 intron CG40378 + chr2R_15_550001 chr2R_550001 EF78_1-HE 751 chr2R 2110476 2110501 chr2R 2118064 2118089 17.6 7 7588 11.0 4.0 7.5 0.8 7613 chr2R 2110476 intron CG17684 - chr2R 2114282 intron CG17684 - chr2R 2118089 intron CG17684 - chr2R_7_2110001 chr2R_2110001 EF78_1-HE 752 chr2R 2498962 2499005 chr2R 2508135 2508178 roo 9 9173 1.5 1.0 1.2 4.1 9216 chr2R 2498962 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508178 intron MFS17 - chr2R_9_2500001 chr2R_2500001 EF78_1-HE 753 chr2R 1373061 1373072 chr2R 2589333 2589344 Cr1a 4 1216272 1.0 3.0 2.0 1.3 1216283 chr2R 1373061 intron l(2)41Ab + chr2R 1981202 intron CG17684 - chr2R 2589344 intergenic not near genes chr2R_4_1980001 chr2R_1980001 EF78_1-HE 759 chr2R 4622939 4622987 chr2R 4624124 4624158 1360 11 1184 2.5 2.5 2.5 3.1 1219 chr2R 4622939 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624158 intergenic not near genes chr2R_11_4620001 chr2R_4620001 EF78_1-HE 761 chr2R 4838848 4838902 chr2R 4840397 4840451 transib2 9 1549 5.5 3.0 4.2 1.7 1603 chr2R 4838848 intergenic not near genes chr2R 4839650 intergenic not near genes chr2R 4840451 intergenic not near genes chr2R_9_4835001 chr2R_4835001 EF78_1-HE 773 chr2R 5417984 5418015 chr2R 5420642 5420673 Burdock 7 2658 3.0 1.5 2.2 2.2 2689 chr2R 5417984 intron laccase2 + chr2R 5419328 intron laccase2 + chr2R 5420673 intron laccase2 + chr2R_7_5415001 chr2R_5415001 EF78_1-HE 779 chr2R 5513384 5513402 chr2R 5515057 5515075 NOF 4 1673 5.0 3.0 4.0 0.8 1691 chr2R 5513384 intron CG30438 + chr2R 5514230 intron CG30438 + chr2R 5515075 intron CG30438 + chr2R_4_5510001 chr2R_5510001 EF78_1-HE 780 chr2R 5513405 5513439 chr2R 5515053 5515112 NOF 10 1667 1.0 2.5 1.8 3.6 1707 chr2R 5513405 intron CG30438 + chr2R 5514258 intron CG30438 + chr2R 5515112 intron CG30438 + chr2R_10_5510001 chr2R_5510001 EF78_1-HE 782 chr2R 5543205 5543218 chr2R 5547315 5547328 invader1 4 4110 0.0 7.0 3.5 0.9 4123 chr2R 5543205 intron CG30438 + chr2R 5545266 intron CG30438 + chr2R 5547328 intron CG30438 + chr2R_4_5545001 chr2R_5545001 EF78_1-HE 784 chr2R 4284685 4284691 chr2R 5617478 5617485 Cr1a 4 1332793 25.5 22.0 23.8 0.2 1332800 chr2R 4284685 intergenic not near genes chr2R 4951085 intron Ir41a + chr2R 5617485 intergenic not near genes chr2R_4_4950001 chr2R_4950001 EF78_1-HE 793 chr2R 5862593 5862645 chr2R 5863619 5863673 INE-1 13 1027 1.0 2.0 1.5 5.2 1080 chr2R 5862593 intergenic not near genes chr2R 5863133 intergenic not near genes chr2R 5863673 intergenic not near genes chr2R_13_5860001 chr2R_5860001 EF78_1-HE 794 chr2R 5869249 5869300 chr2R 5874351 5874402 flea 16 5102 3.5 3.5 3.5 3.6 5153 chr2R 5869249 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874402 intergenic not near genes chr2R_16_5870001 chr2R_5870001 EF78_1-HE 798 chr2R 5902142 5902190 chr2R 5909727 5909775 17.6 5 7584 4.0 4.0 4.0 1.0 7633 chr2R 5902142 intron CG43366 + chr2R 5905958 intron CG43366 + chr2R 5909775 intron CG43366 + chr2R_5_5905001 chr2R_5905001 EF78_1-HE 806 chr2R 6096697 6096744 chr2R 6101921 6101968 BS 12 5224 5.5 5.5 5.5 1.8 5271 chr2R 6096697 intron EcR - chr2R 6099332 intron EcR - chr2R 6101968 intron EcR - chr2R_12_6095001 chr2R_6095001 EF78_1-HE 815 chr2R 6579749 6579806 chr2R 6584861 6584903 flea 12 5109 2.5 5.0 3.8 2.5 5154 chr2R 6579749 intron jing + chr2R 6582326 intron jing + chr2R 6584903 intron jing + chr2R_12_6580001 chr2R_6580001 EF78_1-HE 821 chr2R 6952145 6952181 chr2R 6959751 6959787 opus 9 7606 6.5 3.0 4.8 1.6 7642 chr2R 6952145 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955966 intron,intron mim -,CheB42c - chr2R 6959787 intron,intron mim -,CheB42c - chr2R_9_6955001 chr2R_6955001 EF78_1-HE 826 chr2R 7209847 7209871 chr2R 7217621 7217645 roo 5 7774 2.5 6.0 4.2 1.0 7798 chr2R 7209847 intron pk + chr2R 7213746 intron pk + chr2R 7217645 intron pk + chr2R_5_7210001 chr2R_7210001 EF78_1-HE 827 chr2R 7235804 7235849 chr2R 7240922 7240967 jockey 13 5117 1.5 2.5 2.0 4.3 5163 chr2R 7235804 intergenic not near genes chr2R 7238386 intergenic not near genes chr2R 7240967 intergenic not near genes chr2R_13_7235001 chr2R_7235001 EF78_1-HE 830 chr2R 7434899 7434900 chr2R 7439226 7439227 Juan 4 4327 2.0 6.5 4.2 0.8 4328 chr2R 7434899 intergenic so + chr2R 7437063 intergenic not near genes chr2R 7439227 intergenic not near genes chr2R_4_7435001 chr2R_7435001 EF78_1-HE 833 chr2R 7608381 7608445 chr2R 7613610 7613673 I-element 8 5228 0.0 0.0 0.0 8.0 5292 chr2R 7608381 intron CG1358 - chr2R 7611027 intron CG1358 - chr2R 7613673 intron CG1358 - chr2R_8_7610001 chr2R_7610001 EF78_1-HE 839 chr2R 7815652 7815675 chr2R 7822147 7822170 Burdock 4 6494 1.5 2.5 2.0 1.3 6518 chr2R 7815652 intergenic CG1882 + chr2R 7818911 intergenic not near genes chr2R 7822170 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 EF78_1-HE 840 chr2R 7862207 7862249 chr2R 7867347 7867388 flea 10 5139 4.5 6.0 5.2 1.6 5181 chr2R 7862207 intron Dgk - chr2R 7864798 intron Dgk - chr2R 7867388 intron Dgk - chr2R_10_7860001 chr2R_7860001 EF78_1-HE 841 chr2R 7869168 7869207 chr2R 7873973 7874019 Doc 22 4811 11.0 7.5 9.2 2.2 4851 chr2R 7869168 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7874019 intron Dgk - chr2R_22_7870001 chr2R_7870001 EF78_1-HE 846 chr2R 8160912 8160944 chr2R 8161028 8161060 1360 8 116 3.0 6.0 4.5 1.5 148 chr2R 8160912 exon CG8708 - chr2R 8160986 intron CG8708 - chr2R 8161060 intron CG8708 - chr2R_8_8160001 chr2R_8160001 EF78_1-HE 852 chr2R 8330840 8330887 chr2R 8331352 8331399 roo 14 512 5.0 9.5 7.2 1.7 559 chr2R 8330840 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331399 intron pdm3 + chr2R_14_8330001 chr2R_8330001 EF78_1-HE 855 chr2R 8398189 8398235 chr2R 8402996 8403042 Doc 15 4807 4.5 4.0 4.2 2.9 4853 chr2R 8398189 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403042 intron CG2121 - chr2R_15_8400001 chr2R_8400001 EF78_1-HE 861 chr2R 8566035 8566058 chr2R 8567007 8567030 1360 7 972 4.5 5.5 5.0 1.2 995 chr2R 8566035 5` UTR Cyp6a14 - chr2R 8566532 5` UTR Cyp6a14 - chr2R 8567030 5` UTR Cyp6a14 - chr2R_7_8565001 chr2R_8565001 EF78_1-HE 865 chr2R 8722742 8722794 chr2R 8723008 8723050 pogo 13 266 4.0 7.5 5.8 1.9 308 chr2R 8722742 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723050 intron CG14767 - chr2R_13_8720001 chr2R_8720001 EF78_1-HE 867 chr2R 8777928 8777943 chr2R 8784158 8784173 diver 12 6230 3.5 6.5 5.0 2.0 6245 chr2R 8777928 intergenic not near genes chr2R 8781050 intergenic not near genes chr2R 8784173 intergenic not near genes chr2R_12_8780001 chr2R_8780001 EF78_1-HE 874 chr2R 9151278 9151321 chr2R 9157774 9157817 Burdock 8 6496 3.5 4.0 3.8 1.7 6539 chr2R 9151278 exon CG30345 + chr2R 9154548 intergenic not near genes chr2R 9157817 intergenic CG8008 - chr2R_8_9150001 chr2R_9150001 EF78_1-HE 875 chr2R 9212674 9212705 chr2R 9213186 9213217 roo 9 510 6.5 4.5 5.5 1.4 543 chr2R 9212674 intergenic CR45309 + chr2R 9212946 intergenic CR45309 + chr2R 9213217 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 EF78_1-HE 882 chr2R 9480054 9480082 chr2R 9490611 9490639 roo 7 10557 4.5 3.5 4.0 1.4 10585 chr2R 9480054 intergenic not near genes chr2R 9485346 intergenic not near genes chr2R 9490639 intergenic not near genes chr2R_7_9485001 chr2R_9485001 EF78_1-HE 889 chr2R 9726587 9726633 chr2R 9734167 9734212 17.6 5 7580 5.0 5.0 5.0 0.8 7625 chr2R 9726587 intron sqa - chr2R 9730400 intron sqa - chr2R 9734212 intron sqa - chr2R_5_9730001 chr2R_9730001 EF78_1-HE 892 chr2R 9871033 9871068 chr2R 9871545 9871580 roo 11 511 5.0 6.0 5.5 1.7 547 chr2R 9871033 intron cbx - chr2R 9871306 intron cbx - chr2R 9871580 intron,5` UTR cbx -,CG18446 + chr2R_11_9870001 chr2R_9870001 EF78_1-HE 894 chr2R 9945419 9945461 chr2R 9945641 9945683 BS 6 222 3.5 1.5 2.5 1.7 264 chr2R 9945419 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945683 intron Mef2 - chr2R_6_9945001 chr2R_9945001 EF78_1-HE 900 chr2R 10005832 10005874 chr2R 10007023 10007065 1360 14 1191 6.5 6.0 6.2 1.9 1233 chr2R 10005832 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007065 intron Pka-R2 - chr2R_14_10005001 chr2R_10005001 EF78_1-HE 904 chr2R 10176858 10176911 chr2R 10186051 10186104 roo 14 9193 4.0 3.0 3.5 3.1 9246 chr2R 10176858 intron KCNQ - chr2R 10181481 intron KCNQ - chr2R 10186104 intron KCNQ - chr2R_14_10180001 chr2R_10180001 EF78_1-HE 920 chr2R 10622334 10622355 chr2R 10637122 10637146 mdg1 5 14790 2.0 3.0 2.5 1.4 14812 chr2R 10622334 intron CG11883 + chr2R 10629740 intron CG11883 + chr2R 10637146 intron CG11883 + chr2R_5_10625001 chr2R_10625001 EF78_1-HE 932 chr2R 10948019 10948057 chr2R 10955596 10955634 17.6 5 7577 0.0 4.5 2.2 1.6 7615 chr2R 10948019 intergenic not near genes chr2R 10951826 intergenic not near genes chr2R 10955634 intergenic not near genes chr2R_5_10950001 chr2R_10950001 EF78_1-HE 935 chr2R 10979641 10979672 chr2R 10980136 10980168 297 6 495 2.0 1.5 1.8 2.1 527 chr2R 10979641 intergenic not near genes chr2R 10979904 intergenic not near genes chr2R 10980168 intergenic not near genes chr2R_6_10975001 chr2R_10975001 EF78_1-HE 936 chr2R 11009791 11009847 chr2R 11018991 11019040 roo 11 9198 2.5 4.0 3.2 2.6 9249 chr2R 11009791 intron luna - chr2R 11014416 intron luna - chr2R 11019040 intron luna - chr2R_11_11010001 chr2R_11010001 EF78_1-HE 937 chr2R 11019857 11019899 chr2R 11024949 11024991 jockey 9 5090 4.0 4.0 4.0 1.8 5134 chr2R 11019857 intron luna - chr2R 11022424 intron luna - chr2R 11024991 intron luna - chr2R_9_11020001 chr2R_11020001 EF78_1-HE 946 chr2R 11207808 11207842 chr2R 11208027 11208061 BS 8 217 4.0 9.0 6.5 1.1 253 chr2R 11207808 intron shn + chr2R 11207934 intron shn + chr2R 11208061 intron shn + chr2R_8_11205001 chr2R_11205001 EF78_1-HE 949 chr2R 11297613 11297650 chr2R 11301960 11301997 flea 10 4347 3.0 0.5 1.8 3.6 4384 chr2R 11297613 intergenic CG42336 - chr2R 11299805 intergenic not near genes chr2R 11301997 5` UTR CG7741 + chr2R_10_11295001 chr2R_11295001 EF78_1-HE 952 chr2R 11415508 11415551 chr2R 11418683 11418726 opus 15 3174 3.5 14.5 9.0 1.5 3218 chr2R 11415508 intron Drip - chr2R 11417117 intron Drip - chr2R 11418726 intron Drip - chr2R_15_11415001 chr2R_11415001 EF78_1-HE 953 chr2R 11472624 11472679 chr2R 11473847 11473901 pogo 7 1223 1.0 2.0 1.5 2.8 1277 chr2R 11472624 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473901 intergenic not near genes chr2R_7_11470001 chr2R_11470001 EF78_1-HE 985 chr2R 12481144 12481160 chr2R 12482974 12482990 roo 5 1830 2.5 7.5 5.0 0.8 1846 chr2R 12481144 exon Dh44-R2 + chr2R 12482067 intron Dh44-R2 + chr2R 12482990 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 EF78_1-HE 987 chr2R 12501677 12501718 chr2R 12503865 12503900 Rt1c 7 2186 9.0 4.0 6.5 0.9 2223 chr2R 12501677 intron fdl - chr2R 12502788 intron fdl - chr2R 12503900 intron fdl - chr2R_7_12500001 chr2R_12500001 EF78_1-HE 992 chr2R 12707509 12707548 chr2R 12715901 12715940 roo 16 8392 0.5 3.0 1.8 5.7 8431 chr2R 12707509 intron CG42663 + chr2R 12711724 intron CG42663 + chr2R 12715940 intron CG42663 + chr2R_16_12710001 chr2R_12710001 EF78_1-HE 997 chr2R 12789272 12789326 chr2R 12797661 12797714 roo 16 8387 4.0 3.5 3.8 3.3 8442 chr2R 12789272 intron,3` UTR sca +,CR45137 - chr2R 12793493 intron,intron sca +,CR45137 - chr2R 12797714 intron,3` UTR sca +,CR45137 - chr2R_16_12790001 chr2R_12790001 EF78_1-HE 999 chr2R 12819437 12819478 chr2R 12824528 12824569 jockey 14 5089 2.0 7.0 4.5 2.5 5132 chr2R 12819437 intergenic not near genes chr2R 12822003 intergenic not near genes chr2R 12824569 intergenic not near genes chr2R_14_12820001 chr2R_12820001 EF78_1-HE 1005 chr2R 13136819 13136860 chr2R 13141643 13141684 Doc 4 4824 4.5 3.0 3.8 0.8 4865 chr2R 13136819 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141684 intron Cap-G + chr2R_4_13135001 chr2R_13135001 EF78_1-HE 1021 chr2R 13580470 13580529 chr2R 13580846 13580899 jockey 9 375 1.0 1.5 1.2 4.1 429 chr2R 13580470 3` UTR CG6191 - chr2R 13580684 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580899 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 EF78_1-HE 1031 chr2R 13728103 13728116 chr2R 13735792 13735805 opus 5 7689 10.0 0.0 5.0 0.8 7702 chr2R 13728103 intron fas + chr2R 13731954 intron fas + chr2R 13735805 intron fas + chr2R_5_13730001 chr2R_13730001 EF78_1-HE 1035 chr2R 13905574 13905621 chr2R 13907582 13907629 Rt1a 7 2008 0.0 2.5 1.2 3.2 2055 chr2R 13905574 intron shot - chr2R 13906602 intron shot - chr2R 13907629 intron shot - chr2R_7_13905001 chr2R_13905001 EF78_1-HE 1047 chr2R 14467284 14467325 chr2R 14476468 14476509 roo 8 9183 0.0 3.0 1.5 3.2 9225 chr2R 14467284 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476509 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 EF78_1-HE 1048 chr2R 14497374 14497407 chr2R 14498566 14498599 1360 9 1192 9.0 8.0 8.5 0.9 1225 chr2R 14497374 3` UTR Cpsf160 - chr2R 14497986 intron Cpsf160 - chr2R 14498599 3` UTR Cpsf160 - chr2R_9_14495001 chr2R_14495001 EF78_1-HE 1066 chr2R 14889207 14889210 chr2R 14897838 14897841 Max-element 4 8631 6.5 0.0 3.2 1.0 8634 chr2R 14889207 intergenic Cyp6a8 - chr2R 14893524 intergenic not near genes chr2R 14897841 intergenic not near genes chr2R_4_14890001 chr2R_14890001 EF78_1-HE 1075 chr2R 15004701 15004758 chr2R 15005056 15005113 jockey 15 354 5.0 4.5 4.8 2.6 412 chr2R 15004701 intergenic not near genes chr2R 15004907 intergenic not near genes chr2R 15005113 intergenic not near genes chr2R_15_15000001 chr2R_15000001 EF78_1-HE 1077 chr2R 15015435 15015489 chr2R 15022885 15022939 mdg1 22 7449 6.0 4.0 5.0 3.7 7504 chr2R 15015435 intron hbs + chr2R 15019187 intron hbs + chr2R 15022939 intron hbs + chr2R_22_15015001 chr2R_15015001 EF78_1-HE 1078 chr2R 15084956 15084977 chr2R 15092030 15092052 297 4 7075 8.5 3.0 5.8 0.6 7096 chr2R 15084956 intergenic not near genes chr2R 15088504 intergenic not near genes chr2R 15092052 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 EF78_1-HE 1083 chr2R 15119309 15119346 chr2R 15127816 15127853 Tirant 8 8507 5.0 3.0 4.0 1.6 8544 chr2R 15119309 intron chn + chr2R 15123581 intron chn + chr2R 15127853 intron chn + chr2R_8_15120001 chr2R_15120001 EF78_1-HE 1105 chr2R 16061706 16061717 chr2R 16064361 16064372 Burdock 10 2655 10.5 4.5 7.5 1.2 2666 chr2R 16061706 intergenic not near genes chr2R 16063039 intergenic not near genes chr2R 16064372 intergenic not near genes chr2R_10_16060001 chr2R_16060001 EF78_1-HE 1115 chr2R 16539627 16539634 chr2R 16544859 16544860 copia 6 5231 2.0 0.0 1.0 3.0 5233 chr2R 16539627 intergenic not near genes chr2R 16542244 intergenic not near genes chr2R 16544860 intergenic not near genes chr2R_6_16540001 chr2R_16540001 EF78_1-HE 1138 chr2R 17236488 17236508 chr2R 17241718 17241735 copia 7 5229 5.0 4.5 4.8 1.2 5247 chr2R 17236488 intron mbl + chr2R 17239112 intron mbl + chr2R 17241735 intron mbl + chr2R_7_17235001 chr2R_17235001 EF78_1-HE 1139 chr2R 17236510 17236531 chr2R 17241714 17241761 copia 7 5225 3.0 4.0 3.5 1.6 5251 chr2R 17236510 intron mbl + chr2R 17239136 intron mbl + chr2R 17241761 intron mbl + chr2R_7_17235001 chr2R_17235001 EF78_1-HE 1145 chr2R 17485897 17485946 chr2R 17490685 17490732 F-element 6 4786 2.0 0.5 1.2 2.7 4835 chr2R 17485897 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488314 intron NT5E-2 + chr2R 17490732 intron NT5E-2 + chr2R_6_17485001 chr2R_17485001 EF78_1-HE 1149 chr2R 17782343 17782394 chr2R 17783572 17783623 pogo 11 1229 0.5 0.0 0.2 9.2 1280 chr2R 17782343 intergenic CG33981 -,fab1 - chr2R 17782983 intergenic not near genes chr2R 17783623 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 EF78_1-HE 1150 chr2R 17784006 17784055 chr2R 17784271 17784320 pogo 18 265 6.0 9.5 7.8 2.0 314 chr2R 17784006 intergenic mir-31a - chr2R 17784163 intergenic mir-31a - chr2R 17784320 intergenic mir-31a - chr2R_18_17780001 chr2R_17780001 EF78_1-HE 1162 chr2R 18045653 18045690 chr2R 18046031 18046068 jockey 6 378 4.5 2.5 3.5 1.3 415 chr2R 18045653 intergenic not near genes chr2R 18045860 intergenic not near genes chr2R 18046068 intergenic CG5767 - chr2R_6_18045001 chr2R_18045001 EF78_1-HE 1166 chr2R 18111629 18111665 chr2R 18115544 18115579 F-element 18 3914 5.5 1.5 3.5 4.0 3950 chr2R 18111629 intergenic not near genes chr2R 18113604 intergenic not near genes chr2R 18115579 intergenic not near genes chr2R_18_18110001 chr2R_18110001 EF78_1-HE 1174 chr2R 18358374 18358409 chr2R 18372612 18372648 roo 5 14239 4.5 5.5 5.0 0.8 14274 chr2R 18358374 intergenic not near genes chr2R 18365511 intergenic not near genes chr2R 18372648 intergenic not near genes chr2R_5_18365001 chr2R_18365001 EF78_1-HE 1183 chr2R 18487813 18487852 chr2R 18495291 18495348 blood 6 7484 1.5 6.5 4.0 1.2 7535 chr2R 18487813 intron CG30116 - chr2R 18491580 intron CG30116 - chr2R 18495348 intron CG30116 - chr2R_6_18490001 chr2R_18490001 EF78_1-HE 1186 chr2R 18575771 18575831 chr2R 18581985 18582045 3S18 21 6199 1.5 3.5 2.5 6.0 6274 chr2R 18575771 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582045 intron GEFmeso - chr2R_21_18575001 chr2R_18575001 EF78_1-HE 1187 chr2R 18590841 18590879 chr2R 18600019 18600057 roo 4 9178 4.5 3.0 3.8 0.8 9216 chr2R 18590841 intron GEFmeso - chr2R 18595449 intron GEFmeso - chr2R 18600057 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 EF78_1-HE 1214 chr2R 19914826 19914874 chr2R 19922264 19922312 mdg1 11 7437 1.5 3.0 2.2 3.4 7486 chr2R 19914826 intergenic not near genes chr2R 19918569 intergenic not near genes chr2R 19922312 intergenic not near genes chr2R_11_19915001 chr2R_19915001 EF78_1-HE 1215 chr2R 19957404 19957459 chr2R 19962632 19962687 copia 22 5227 3.0 1.5 2.2 6.9 5283 chr2R 19957404 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962687 intergenic not near genes chr2R_22_19960001 chr2R_19960001 EF78_1-HE 1220 chr2R 20069220 20069271 chr2R 20071876 20071928 opus 7 2656 2.0 2.0 2.0 2.3 2708 chr2R 20069220 intergenic not near genes chr2R 20070574 intergenic not near genes chr2R 20071928 intergenic not near genes chr2R_7_20070001 chr2R_20070001 EF78_1-HE 1236 chr2R 20739419 20739473 chr2R 20744213 20744267 F-element 14 4793 5.5 4.5 5.0 2.3 4848 chr2R 20739419 intron dpr + chr2R 20741843 intron dpr + chr2R 20744267 intron dpr + chr2R_14_20740001 chr2R_20740001 EF78_1-HE 1246 chr2R 21151110 21151138 chr2R 21153748 21153797 opus 4 2654 0.0 2.0 1.0 2.0 2687 chr2R 21151110 intron CG30389 - chr2R 21152454 intron CG30389 - chr2R 21153797 intron CG30389 - chr2R_4_21150001 chr2R_21150001 EF78_1-HE 1265 chr2R 21738262 21738307 chr2R 21747447 21747476 roo 5 9176 2.0 5.5 3.8 1.0 9214 chr2R 21738262 intergenic not near genes chr2R 21742869 intergenic not near genes chr2R 21747476 intergenic not near genes chr2R_5_21740001 chr2R_21740001 EF78_1-HE 1266 chr2R 21753059 21753116 chr2R 21753570 21753627 roo 12 509 2.0 5.5 3.8 2.5 568 chr2R 21753059 intergenic not near genes chr2R 21753343 intergenic not near genes chr2R 21753627 intergenic not near genes chr2R_12_21750001 chr2R_21750001 EF78_1-HE 1279 chr2R 22349673 22349721 chr2R 22351482 22351531 jockey 13 1810 7.5 9.5 8.5 1.4 1858 chr2R 22349673 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351531 intron Liprin-gamma - chr2R_13_22350001 chr2R_22350001 EF78_1-HE 1280 chr2R 22360361 22360372 chr2R 22360820 22360831 jockey 4 459 7.5 4.0 5.8 0.6 470 chr2R 22360361 intron Liprin-gamma - chr2R 22360596 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 EF78_1-HE 1284 chr2R 22465293 22465347 chr2R 22465512 22465571 BS 17 219 6.0 4.5 5.2 2.7 278 chr2R 22465293 intron CG10384 + chr2R 22465432 intron CG10384 + chr2R 22465571 intron CG10384 + chr2R_17_22465001 chr2R_22465001 EF78_1-HE 1286 chr2R 22525745 22525776 chr2R 22529326 22529356 jockey 7 3580 2.0 3.0 2.5 2.0 3611 chr2R 22525745 intron px - chr2R 22527550 intron px - chr2R 22529356 intron px - chr2R_7_22525001 chr2R_22525001 EF78_1-HE 1290 chr2R 22729446 22729466 chr2R 22729675 22729700 INE-1 7 232 4.0 5.5 4.8 1.2 254 chr2R 22729446 intron jbug - chr2R 22729573 intron jbug - chr2R 22729700 intron jbug - chr2R_7_22725001 chr2R_22725001 EF78_1-HE 1291 chr2R 22774958 22774992 chr2R 22775386 22775437 jockey 10 443 4.5 5.0 4.8 1.7 479 chr2R 22774958 intron CG42260 - chr2R 22775198 intron CG42260 - chr2R 22775437 intron CG42260 - chr2R_10_22775001 chr2R_22775001 EF78_1-HE 1309 chr2R 23402594 23402637 chr2R 23407696 23407739 flea 7 5102 2.0 4.0 3.0 1.8 5145 chr2R 23402594 intergenic CG3520 - chr2R 23405166 intergenic not near genes chr2R 23407739 intergenic not near genes chr2R_7_23405001 chr2R_23405001 EF78_1-HE 1318 chr2R 23529554 23529606 chr2R 23537156 23537208 412 12 7601 2.5 2.0 2.2 3.8 7654 chr2R 23529554 intron bw - chr2R 23533381 intron bw - chr2R 23537208 exon bw - chr2R_12_23530001 chr2R_23530001 EF78_1-HE 1323 chr2R 23914294 23914329 chr2R 23921944 23921979 412 7 7650 2.0 2.5 2.2 2.2 7685 chr2R 23914294 exon kcc + chr2R 23918136 intron kcc + chr2R 23921979 exon kcc + chr2R_7_23915001 chr2R_23915001 EF78_1-HE 1326 chr2R 24147051 24147090 chr2R 24154654 24154694 412 8 7603 1.5 3.0 2.2 2.5 7643 chr2R 24147051 intron Dat + chr2R 24150872 intron Dat + chr2R 24154694 intron Dat + chr2R_8_24150001 chr2R_24150001 EF78_1-HE 1327 chr2R 24177238 24177267 chr2R 24184748 24184777 412 5 7510 1.5 0.0 0.8 2.8 7539 chr2R 24177238 3` UTR Nop60B + chr2R 24181008 intron Nop60B + chr2R 24184777 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 EF78_1-HE 1339 chr2R 24647570 24647616 chr2R 24655153 24655199 412 13 7583 4.0 3.5 3.8 2.7 7629 chr2R 24647570 intergenic not near genes chr2R 24651384 intergenic not near genes chr2R 24655199 intergenic not near genes chr2R_13_24650001 chr2R_24650001 EF78_1-HE 1342 chr2R 24727832 24727861 chr2R 24735394 24735402 mdg1 9 7560 4.5 3.5 4.0 1.8 7570 chr2R 24727832 intron Mid1 - chr2R 24731617 intron Mid1 - chr2R 24735402 intron Mid1 - chr2R_9_24730001 chr2R_24730001 EF78_1-HE 1344 chr2R 24763605 24763638 chr2R 24765607 24765640 G2 4 2002 0.5 1.0 0.8 2.2 2035 chr2R 24763605 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765640 exon CG3894 + chr2R_4_24760001 chr2R_24760001 EF78_1-HE 1351 chr2R 25141631 25141676 chr2R 25159347 25159392 roo 10 17716 5.5 3.0 4.2 1.9 17761 chr2R 25141631 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159392 intergenic not near genes chr2R_10_25150001 chr2R_25150001 EF78_1-HE 1359 chr3L 110185 110238 chr3L 119378 119431 roo 10 9193 1.5 2.0 1.8 3.6 9246 chr3L 110185 intergenic not near genes chr3L 114808 intergenic not near genes chr3L 119431 intergenic not near genes chr3L_10_110001 chr3L_110001 EF78_1-HE 1365 chr3L 402664 402717 chr3L 409743 409796 297 18 7079 5.0 10.0 7.5 2.1 7132 chr3L 402664 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409796 intergenic not near genes chr3L_18_405001 chr3L_405001 EF78_1-HE 1376 chr3L 789889 789943 chr3L 790400 790454 roo 15 510 5.5 5.0 5.2 2.4 565 chr3L 789889 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790454 intergenic not near genes chr3L_15_790001 chr3L_790001 EF78_1-HE 1379 chr3L 857971 858012 chr3L 866478 866519 Tirant 15 8505 6.5 1.5 4.0 3.0 8548 chr3L 857971 intergenic not near genes chr3L 862245 intergenic not near genes chr3L 866519 5` UTR CG12502 + chr3L_15_860001 chr3L_860001 EF78_1-HE 1380 chr3L 925156 925197 chr3L 932608 932649 mdg1 10 7452 1.5 3.0 2.2 3.1 7493 chr3L 925156 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932649 intron Glut1 + chr3L_10_925001 chr3L_925001 EF78_1-HE 1383 chr3L 939754 939798 chr3L 940901 940945 jockey 15 1147 5.0 7.0 6.0 2.1 1191 chr3L 939754 intron Glut1 + chr3L 940350 intron Glut1 + chr3L 940945 intron Glut1 + chr3L_15_940001 chr3L_940001 EF78_1-HE 1388 chr3L 1154110 1154160 chr3L 1163286 1163336 roo 8 9176 1.5 2.5 2.0 2.7 9226 chr3L 1154110 intron bab2 - chr3L 1158723 intron bab2 - chr3L 1163336 intron bab2 - chr3L_8_1155001 chr3L_1155001 EF78_1-HE 1389 chr3L 1219568 1219607 chr3L 1227327 1227366 412 4 7759 3.5 3.0 3.2 1.0 7798 chr3L 1219568 intron mwh + chr3L 1223467 intron mwh + chr3L 1227366 intron mwh + chr3L_4_1220001 chr3L_1220001 EF78_1-HE 1395 chr3L 1424755 1424772 chr3L 1430031 1430048 Rt1a 12 5276 0.0 8.5 4.2 2.3 5293 chr3L 1424755 intron Ptp61F - chr3L 1427402 intron Ptp61F - chr3L 1430048 intron Ptp61F - chr3L_12_1425001 chr3L_1425001 EF78_1-HE 1396 chr3L 1485713 1485742 chr3L 1486910 1486939 1360 5 1197 3.5 6.5 5.0 0.8 1226 chr3L 1485713 intron stet - chr3L 1486326 intron stet - chr3L 1486939 intron stet - chr3L_5_1485001 chr3L_1485001 EF78_1-HE 1397 chr3L 1490258 1490311 chr3L 1491018 1491070 1360 13 760 3.0 3.5 3.2 3.1 812 chr3L 1490258 intergenic not near genes chr3L 1490664 intergenic CG12084 - chr3L 1491070 3` UTR CG12084 - chr3L_13_1490001 chr3L_1490001 EF78_1-HE 1398 chr3L 1505993 1506030 chr3L 1513596 1513653 17.6 17 7620 3.5 4.5 4.0 3.4 7660 chr3L 1505993 intron,intron Psa +,cue - chr3L 1509823 intron,intron Psa +,cue - chr3L 1513653 intron,intron Psa +,cue - chr3L_17_1505001 chr3L_1505001 EF78_1-HE 1409 chr3L 2108233 2108282 chr3L 2113463 2113512 copia 7 5229 1.5 2.0 1.8 2.5 5279 chr3L 2108233 intron sls - chr3L 2110872 intron sls - chr3L 2113512 intron sls - chr3L_7_2110001 chr3L_2110001 EF78_1-HE 1444 chr3L 2927816 2927867 chr3L 2936119 2936169 Tirant 19 8302 5.5 4.0 4.8 3.3 8353 chr3L 2927816 intron Shab + chr3L 2931992 intron Shab + chr3L 2936169 intron Shab + chr3L_19_2930001 chr3L_2930001 EF78_1-HE 1445 chr3L 3061259 3061312 chr3L 3069867 3069909 Tirant 31 8608 6.5 6.5 6.5 4.1 8650 chr3L 3061259 intron CG32486 - chr3L 3065584 intron CG32486 - chr3L 3069909 intron CG32486 - chr3L_31_3065001 chr3L_3065001 EF78_1-HE 1454 chr3L 3281414 3281468 chr3L 3281936 3281989 Doc 15 516 3.5 4.5 4.0 3.0 575 chr3L 3281414 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281989 intron CG12017 + chr3L_15_3280001 chr3L_3280001 EF78_1-HE 1461 chr3L 3475081 3475103 chr3L 3475536 3475559 jockey 4 463 4.5 8.0 6.2 0.6 478 chr3L 3475081 intron CG42324 + chr3L 3475320 intron CG42324 + chr3L 3475559 intron CG42324 + chr3L_4_3475001 chr3L_3475001 EF78_1-HE 1472 chr3L 3601275 3601325 chr3L 3606612 3606662 copia 15 5337 7.5 6.5 7.0 1.9 5387 chr3L 3601275 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606662 intron Eip63E + chr3L_15_3600001 chr3L_3600001 EF78_1-HE 1482 chr3L 3833711 3833761 chr3L 3833978 3834028 pogo 19 267 5.0 5.0 5.0 3.2 317 chr3L 3833711 intron enc + chr3L 3833870 intron enc + chr3L 3834028 intron enc + chr3L_19_3830001 chr3L_3830001 EF78_1-HE 1491 chr3L 4328729 4328760 chr3L 4336253 4336284 412 15 7523 5.5 6.0 5.8 2.2 7555 chr3L 4328729 intron Cip4 - chr3L 4332506 intron Cip4 - chr3L 4336284 exon Cip4 - chr3L_15_4330001 chr3L_4330001 EF78_1-HE 1505 chr3L 4901109 4901128 chr3L 4907325 4907344 diver 8 6216 3.5 0.0 1.8 2.9 6235 chr3L 4901109 intergenic CG13704 + chr3L 4904226 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_8_4900001 chr3L_4900001 EF78_1-HE 1511 chr3L 5034136 5034187 chr3L 5043314 5043365 roo 13 9178 4.5 4.0 4.2 2.5 9229 chr3L 5034136 intron Con - chr3L 5038750 intron Con - chr3L 5043365 intron Con - chr3L_13_5035001 chr3L_5035001 EF78_1-HE 1512 chr3L 5045438 5045450 chr3L 5050245 5050256 Doc 5 4806 7.0 4.5 5.8 0.7 4818 chr3L 5045438 intron Con - chr3L 5047847 intron Con - chr3L 5050256 intron Con - chr3L_5_5045001 chr3L_5045001 EF78_1-HE 1522 chr3L 5299140 5299169 chr3L 5306602 5306631 Quasimodo 4 7462 5.0 2.5 3.8 0.8 7491 chr3L 5299140 intergenic not near genes chr3L 5302886 intergenic not near genes chr3L 5306631 intergenic not near genes chr3L_4_5300001 chr3L_5300001 EF78_1-HE 1540 chr3L 5926303 5926338 chr3L 5926518 5926554 BS 12 215 1.5 2.5 2.0 4.0 251 chr3L 5926303 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926554 intron Vap-33B + chr3L_12_5925001 chr3L_5925001 EF78_1-HE 1541 chr3L 6001658 6001710 chr3L 6004384 6004436 jockey 26 2726 10.5 4.0 7.2 3.2 2778 chr3L 6001658 intron PVRAP + chr3L 6003047 intron PVRAP + chr3L 6004436 intron PVRAP + chr3L_26_6000001 chr3L_6000001 EF78_1-HE 1544 chr3L 6040345 6040393 chr3L 6042727 6042775 Doc 11 2382 5.5 6.0 5.8 1.6 2430 chr3L 6040345 intergenic Jon65Aiv + chr3L 6041560 intergenic not near genes chr3L 6042775 intergenic not near genes chr3L_11_6040001 chr3L_6040001 EF78_1-HE 1551 chr3L 6220904 6220944 chr3L 6230082 6230122 roo 4 9178 2.5 3.0 2.8 1.1 9218 chr3L 6220904 5` UTR pncr008:3L + chr3L 6225513 intergenic not near genes chr3L 6230122 intergenic not near genes chr3L_4_6225001 chr3L_6225001 EF78_1-HE 1555 chr3L 6334984 6335038 chr3L 6335481 6335534 297 20 497 5.5 9.5 7.5 2.4 550 chr3L 6334984 intron CG13300 - chr3L 6335259 intron CG13300 - chr3L 6335534 intron CG13300 - chr3L_20_6335001 chr3L_6335001 EF78_1-HE 1560 chr3L 6620587 6620606 chr3L 6621053 6621054 Rt1c 9 464 2.0 8.5 5.2 1.5 467 chr3L 6620587 intergenic not near genes chr3L 6620820 intergenic not near genes chr3L 6621054 intergenic not near genes chr3L_9_6620001 chr3L_6620001 EF78_1-HE 1565 chr3L 6781106 6781145 chr3L 6783145 6783180 Doc 5 2037 3.0 0.0 1.5 2.0 2074 chr3L 6781106 intergenic not near genes chr3L 6782143 intergenic not near genes chr3L 6783180 intergenic not near genes chr3L_5_6780001 chr3L_6780001 EF78_1-HE 1569 chr3L 6855905 6855954 chr3L 6860716 6860765 Doc 16 4808 3.5 6.0 4.8 2.8 4860 chr3L 6855905 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860765 intergenic not near genes chr3L_16_6855001 chr3L_6855001 EF78_1-HE 1570 chr3L 6887492 6887541 chr3L 6895010 6895059 roo 16 7518 5.5 0.5 3.0 4.0 7567 chr3L 6887492 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895059 intergenic not near genes chr3L_16_6890001 chr3L_6890001 EF78_1-HE 1577 chr3L 6994874 6994906 chr3L 6995511 6995543 BS 6 637 0.0 4.5 2.2 1.9 669 chr3L 6994874 intergenic bin + chr3L 6995208 intergenic not near genes chr3L 6995543 intergenic not near genes chr3L_6_6995001 chr3L_6995001 EF78_1-HE 1599 chr3L 7498750 7498771 chr3L 7503553 7503575 F-element 4 4804 5.5 4.5 5.0 0.7 4825 chr3L 7498750 5` UTR CG8539 - chr3L 7501162 intergenic not near genes chr3L 7503575 intergenic not near genes chr3L_4_7500001 chr3L_7500001 EF78_1-HE 1608 chr3L 7793694 7793722 chr3L 7800772 7800800 297 7 7077 5.5 4.0 4.8 1.2 7106 chr3L 7793694 intron CG32369 - chr3L 7797247 intron CG32369 - chr3L 7800800 intron CG32369 - chr3L_7_7795001 chr3L_7795001 EF78_1-HE 1611 chr3L 7886489 7886547 chr3L 7889032 7889090 Stalker4 13 2542 3.5 2.5 3.0 3.2 2601 chr3L 7886489 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889090 intron CG32365 + chr3L_13_7885001 chr3L_7885001 EF78_1-HE 1612 chr3L 7916816 7916859 chr3L 7926013 7926056 roo 10 9197 2.5 3.0 2.8 2.6 9240 chr3L 7916816 3` UTR syd - chr3L 7921436 intron syd - chr3L 7926056 3` UTR syd - chr3L_10_7920001 chr3L_7920001 EF78_1-HE 1616 chr3L 7985384 7985395 chr3L 7987739 7987750 NOF 5 2355 3.5 2.5 3.0 1.2 2366 chr3L 7985384 intron nmo + chr3L 7986567 intron nmo + chr3L 7987750 intron nmo + chr3L_5_7985001 chr3L_7985001 EF78_1-HE 1622 chr3L 8233569 8233586 chr3L 8238857 8238874 Rt1a 9 5288 3.5 11.0 7.2 1.1 5305 chr3L 8233569 intron CG7213 - chr3L 8236222 intron CG7213 - chr3L 8238874 intron,intron CG7213 -,Dscam4 + chr3L_9_8235001 chr3L_8235001 EF78_1-HE 1633 chr3L 8481774 8481800 chr3L 8490959 8490985 roo 4 9183 2.5 2.5 2.5 1.1 9211 chr3L 8481774 intron CG43163 - chr3L 8486380 intron CG43163 - chr3L 8490985 intron CG43163 - chr3L_4_8485001 chr3L_8485001 EF78_1-HE 1646 chr3L 9076900 9076957 chr3L 9084486 9084543 412 7 7586 5.5 6.0 5.8 1.0 7643 chr3L 9076900 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084543 exon Tequila + chr3L_7_9080001 chr3L_9080001 EF78_1-HE 1649 chr3L 9130530 9130578 chr3L 9134317 9134365 412 9 3786 8.0 3.5 5.8 1.3 3835 chr3L 9130530 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134365 intergenic Dhpr + chr3L_9_9130001 chr3L_9130001 EF78_1-HE 1650 chr3L 9164693 9164720 chr3L 9166186 9166201 hobo 4 1490 6.0 0.0 3.0 1.0 1508 chr3L 9164693 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166201 intron Rdl - chr3L_4_9165001 chr3L_9165001 EF78_1-HE 1651 chr3L 9219222 9219268 chr3L 9219920 9219966 jockey 23 698 6.5 5.5 6.0 3.3 744 chr3L 9219222 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219966 intergenic not near genes chr3L_23_9215001 chr3L_9215001 EF78_1-HE 1653 chr3L 9270597 9270650 chr3L 9278378 9278396 roo 10 7772 5.5 5.0 5.2 1.6 7799 chr3L 9270597 intron GluRIB + chr3L 9274496 intron GluRIB + chr3L 9278396 exon GluRIB + chr3L_10_9270001 chr3L_9270001 EF78_1-HE 1660 chr3L 9443497 9443538 chr3L 9445314 9445355 S-element 9 1815 1.5 3.0 2.2 2.8 1858 chr3L 9443497 intron CG33926 + chr3L 9444426 intron CG33926 + chr3L 9445355 intron CG33926 + chr3L_9_9440001 chr3L_9440001 EF78_1-HE 1661 chr3L 9533728 9533755 chr3L 9541311 9541341 412 7 7586 5.5 7.0 6.2 1.0 7613 chr3L 9533728 intergenic not near genes chr3L 9537534 intergenic not near genes chr3L 9541341 intergenic not near genes chr3L_7_9535001 chr3L_9535001 EF78_1-HE 1662 chr3L 9575888 9575943 chr3L 9580992 9581035 jockey 27 5103 10.5 7.5 9.0 2.7 5147 chr3L 9575888 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581035 intron CG42673 + chr3L_27_9575001 chr3L_9575001 EF78_1-HE 1667 chr3L 10060088 10060116 chr3L 10067693 10067721 17.6 12 7605 10.5 7.0 8.8 1.2 7633 chr3L 10060088 intron dpr6 + chr3L 10063904 intron dpr6 + chr3L 10067721 intron dpr6 + chr3L_12_10060001 chr3L_10060001 EF78_1-HE 1682 chr3L 10414930 10414970 chr3L 10417328 10417368 Doc 15 2398 0.0 8.0 4.0 3.0 2438 chr3L 10414930 intergenic CG12362 + chr3L 10416149 intergenic not near genes chr3L 10417368 intergenic not near genes chr3L_15_10415001 chr3L_10415001 EF78_1-HE 1705 chr3L 11087017 11087083 chr3L 11088849 11088898 S-element 7 1817 0.0 2.5 1.2 3.2 1881 chr3L 11087017 intron JIL-1 - chr3L 11087958 intron JIL-1 - chr3L 11088898 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 EF78_1-HE 1707 chr3L 11105269 11105304 chr3L 11107006 11107039 X-element 7 1737 3.0 2.5 2.8 1.8 1770 chr3L 11105269 intergenic not near genes chr3L 11106154 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_7_11105001 chr3L_11105001 EF78_1-HE 1713 chr3L 11277439 11277471 chr3L 11278459 11278492 Rt1a 7 1021 7.0 3.0 5.0 1.2 1053 chr3L 11277439 intergenic not near genes chr3L 11277966 intergenic not near genes chr3L 11278492 intergenic not near genes chr3L_7_11275001 chr3L_11275001 EF78_1-HE 1715 chr3L 11329680 11329720 chr3L 11332911 11332951 jockey 5 3231 2.5 3.0 2.8 1.3 3271 chr3L 11329680 intergenic not near genes chr3L 11331316 intergenic not near genes chr3L 11332951 intergenic not near genes chr3L_5_11330001 chr3L_11330001 EF78_1-HE 1730 chr3L 11723068 11723109 chr3L 11727889 11727922 Doc 12 4820 3.5 2.5 3.0 3.0 4854 chr3L 11723068 3` UTR Bmcp + chr3L 11725495 intron Bmcp + chr3L 11727922 3` UTR Bmcp + chr3L_12_11725001 chr3L_11725001 EF78_1-HE 1741 chr3L 11864526 11864585 chr3L 11865849 11865906 pogo 18 1320 2.5 3.0 2.8 4.7 1380 chr3L 11864526 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865906 intron CG44837 - chr3L_18_11865001 chr3L_11865001 EF78_1-HE 1762 chr3L 12874902 12874951 chr3L 12877220 12877269 jockey 11 2318 4.0 2.5 3.2 2.6 2367 chr3L 12874902 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877269 intergenic not near genes chr3L_11_12875001 chr3L_12875001 EF78_1-HE 1764 chr3L 12919252 12919279 chr3L 12924751 12924778 Rt1c 10 5498 6.5 1.0 3.8 2.1 5526 chr3L 12919252 intergenic not near genes chr3L 12922015 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_10_12920001 chr3L_12920001 EF78_1-HE 1765 chr3L 12957763 12957815 chr3L 12962271 12962323 copia 15 4507 3.0 2.5 2.8 3.9 4560 chr3L 12957763 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962323 intergenic not near genes chr3L_15_12960001 chr3L_12960001 EF78_1-HE 1793 chr3L 13525135 13525168 chr3L 13532957 13532990 roo 7 7821 7.0 6.0 6.5 0.9 7855 chr3L 13525135 intergenic not near genes chr3L 13529062 intergenic not near genes chr3L 13532990 intergenic not near genes chr3L_7_13525001 chr3L_13525001 EF78_1-HE 1794 chr3L 13574605 13574618 chr3L 13580142 13580155 Rt1c 7 5537 10.0 9.5 9.8 0.6 5550 chr3L 13574605 intron bru-3 - chr3L 13577380 intron bru-3 - chr3L 13580155 intron bru-3 - chr3L_7_13575001 chr3L_13575001 EF78_1-HE 1802 chr3L 13804521 13804569 chr3L 13822833 13822881 roo 14 18312 7.5 7.5 7.5 1.6 18360 chr3L 13804521 intergenic not near genes chr3L 13813701 intergenic not near genes chr3L 13822881 intergenic not near genes chr3L_14_13810001 chr3L_13810001 EF78_1-HE 1819 chr3L 14245545 14245594 chr3L 14245665 14245714 1360 10 120 5.5 7.0 6.2 1.4 169 chr3L 14245545 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245714 intergenic CR44561 -,CR44560 + chr3L_10_14245001 chr3L_14245001 EF78_1-HE 1820 chr3L 14267349 14267390 chr3L 14271815 14271849 F-element 12 4465 5.5 3.5 4.5 2.2 4500 chr3L 14267349 intergenic not near genes chr3L 14269599 intergenic not near genes chr3L 14271849 intergenic not near genes chr3L_12_14265001 chr3L_14265001 EF78_1-HE 1823 chr3L 14295963 14295994 chr3L 14296475 14296506 roo 13 510 13.0 7.5 10.2 1.2 543 chr3L 14295963 intron fz + chr3L 14296234 intron fz + chr3L 14296506 intron fz + chr3L_13_14295001 chr3L_14295001 EF78_1-HE 1824 chr3L 14295996 14296014 chr3L 14296470 14296520 roo 10 507 8.5 6.5 7.5 1.2 524 chr3L 14295996 intron fz + chr3L 14296258 intron fz + chr3L 14296520 intron fz + chr3L_10_14295001 chr3L_14295001 EF78_1-HE 1829 chr3L 14468425 14468474 chr3L 14473657 14473706 copia 15 5232 4.0 5.0 4.5 2.7 5281 chr3L 14468425 intron bbg - chr3L 14471066 intron bbg - chr3L 14473706 intron bbg - chr3L_15_14470001 chr3L_14470001 EF78_1-HE 1839 chr3L 14721163 14721203 chr3L 14723032 14723072 Rt1c 10 1868 5.0 8.0 6.5 1.3 1909 chr3L 14721163 intron ome + chr3L 14722118 intron ome + chr3L 14723072 intron ome + chr3L_10_14720001 chr3L_14720001 EF78_1-HE 1840 chr3L 14725544 14725605 chr3L 14728583 14728625 Doc 16 3025 0.0 5.0 2.5 4.6 3081 chr3L 14725544 intron ome + chr3L 14727084 intron ome + chr3L 14728625 intron ome + chr3L_16_14725001 chr3L_14725001 EF78_1-HE 1843 chr3L 14825137 14825159 chr3L 14832890 14832908 Stalker2 6 7752 4.5 10.5 7.5 0.7 7771 chr3L 14825137 intron CG17839 + chr3L 14829022 intron CG17839 + chr3L 14832908 intron CG17839 + chr3L_6_14825001 chr3L_14825001 EF78_1-HE 1846 chr3L 14954358 14954365 chr3L 14956053 14956060 transib2 5 1695 2.5 8.0 5.2 0.8 1702 chr3L 14954358 intergenic not near genes chr3L 14955209 intergenic not near genes chr3L 14956060 intergenic not near genes chr3L_5_14955001 chr3L_14955001 EF78_1-HE 1852 chr3L 15085042 15085057 chr3L 15086230 15086249 1360 6 1191 1.0 3.5 2.2 1.9 1207 chr3L 15085042 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086249 intron cp309 - chr3L_6_15085001 chr3L_15085001 EF78_1-HE 1857 chr3L 15295749 15295763 chr3L 15298618 15298632 gypsy5 6 2869 9.5 5.0 7.2 0.7 2883 chr3L 15295749 intergenic not near genes chr3L 15297190 intergenic not near genes chr3L 15298632 intergenic Best4 + chr3L_6_15295001 chr3L_15295001 EF78_1-HE 1858 chr3L 15295764 15295796 chr3L 15298633 15298665 gypsy5 11 2869 4.5 6.0 5.2 1.8 2901 chr3L 15295764 intergenic not near genes chr3L 15297214 intergenic not near genes chr3L 15298665 intergenic Best4 + chr3L_11_15295001 chr3L_15295001 EF78_1-HE 1862 chr3L 15423737 15423782 chr3L 15426607 15426651 opus 13 2870 4.0 6.0 5.0 2.2 2914 chr3L 15423737 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426651 intergenic not near genes chr3L_13_15425001 chr3L_15425001 EF78_1-HE 1865 chr3L 15554896 15554943 chr3L 15556709 15556756 S-element 11 1812 4.0 3.5 3.8 2.3 1860 chr3L 15554896 intron AGO2 + chr3L 15555826 intron AGO2 + chr3L 15556756 intron AGO2 + chr3L_11_15555001 chr3L_15555001 EF78_1-HE 1877 chr3L 15899211 15899257 chr3L 15899790 15899850 jockey 10 592 2.5 2.5 2.5 2.9 639 chr3L 15899211 intergenic pHCl - chr3L 15899530 intergenic not near genes chr3L 15899850 intergenic sff - chr3L_10_15895001 chr3L_15895001 EF78_1-HE 1883 chr3L 16184076 16184103 chr3L 16188921 16188948 X-element 9 4845 9.0 7.5 8.2 1.0 4872 chr3L 16184076 intergenic not near genes chr3L 16186512 intergenic not near genes chr3L 16188948 intergenic not near genes chr3L_9_16185001 chr3L_16185001 EF78_1-HE 1890 chr3L 16443775 16443790 chr3L 16446507 16446522 Doc 5 2732 13.0 6.5 9.8 0.5 2747 chr3L 16443775 intron,intron CG33158 +,dsx-c73A - chr3L 16445148 intron,intron CG33158 +,dsx-c73A - chr3L 16446522 intron,intron CG33158 +,dsx-c73A - chr3L_5_16445001 chr3L_16445001 EF78_1-HE 1894 chr3L 16493949 16494002 chr3L 16494490 16494545 jockey 11 543 7.5 5.0 6.2 1.5 596 chr3L 16493949 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494247 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494545 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 EF78_1-HE 1897 chr3L 16616486 16616541 chr3L 16621840 16621891 297 6 5353 2.0 1.0 1.5 2.4 5405 chr3L 16616486 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621891 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 EF78_1-HE 1899 chr3L 16684006 16684040 chr3L 16689263 16689297 copia 21 5257 2.5 14.0 8.2 2.3 5291 chr3L 16684006 intron,intron Lasp -,CG43954 - chr3L 16686652 intron,intron Lasp -,CG43954 - chr3L 16689297 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_21_16685001 chr3L_16685001 EF78_1-HE 1910 chr3L 16945703 16945750 chr3L 16954882 16954915 roo 12 9178 5.5 4.5 5.0 2.0 9212 chr3L 16945703 exon Obp73a + chr3L 16950309 intergenic not near genes chr3L 16954915 5` UTR Nc73EF + chr3L_12_16950001 chr3L_16950001 EF78_1-HE 1912 chr3L 17034908 17034965 chr3L 17035121 17035179 G2 8 214 2.0 1.0 1.5 3.2 271 chr3L 17034908 intergenic not near genes chr3L 17035044 intergenic not near genes chr3L 17035179 intergenic beg + chr3L_8_17035001 chr3L_17035001 EF78_1-HE 1913 chr3L 17084980 17085029 chr3L 17094155 17094204 roo 25 9175 11.5 9.0 10.2 2.2 9224 chr3L 17084980 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094204 intron Rbp6 - chr3L_25_17085001 chr3L_17085001 EF78_1-HE 1931 chr3L 17516965 17517005 chr3L 17524549 17524589 412 9 7583 6.5 5.5 6.0 1.3 7624 chr3L 17516965 intron CG7564 + chr3L 17520777 intron CG7564 + chr3L 17524589 3` UTR CG7564 + chr3L_9_17520001 chr3L_17520001 EF78_1-HE 1939 chr3L 17730830 17730875 chr3L 17738186 17738230 mdg1 12 7356 2.0 0.5 1.2 5.5 7400 chr3L 17730830 intron Ccn + chr3L 17734530 intron Ccn + chr3L 17738230 intron Ccn + chr3L_12_17730001 chr3L_17730001 EF78_1-HE 1944 chr3L 17799791 17799838 chr3L 17801604 17801651 S-element 8 1813 2.0 4.0 3.0 2.0 1860 chr3L 17799791 intron NUCB1 - chr3L 17800721 intron NUCB1 - chr3L 17801651 intron NUCB1 - chr3L_8_17800001 chr3L_17800001 EF78_1-HE 1947 chr3L 17918346 17918395 chr3L 17921175 17921224 opus 4 2829 6.0 3.5 4.8 0.7 2878 chr3L 17918346 intergenic not near genes chr3L 17919785 intergenic not near genes chr3L 17921224 intergenic not near genes chr3L_4_17915001 chr3L_17915001 EF78_1-HE 1951 chr3L 18047692 18047741 chr3L 18056775 18056824 roo 9 9083 2.0 1.5 1.8 3.2 9132 chr3L 18047692 intron Eip75B - chr3L 18052258 intron Eip75B - chr3L 18056824 intron Eip75B - chr3L_9_18050001 chr3L_18050001 EF78_1-HE 1968 chr3L 18506115 18506158 chr3L 18509604 18509647 F-element 17 3489 4.5 4.5 4.5 3.1 3532 chr3L 18506115 intergenic not near genes chr3L 18507881 intergenic not near genes chr3L 18509647 intergenic not near genes chr3L_17_18505001 chr3L_18505001 EF78_1-HE 1969 chr3L 18514890 18514935 chr3L 18520107 18520150 BS 4 5216 4.0 4.5 4.2 0.8 5260 chr3L 18514890 intergenic not near genes chr3L 18517520 intergenic not near genes chr3L 18520150 intergenic not near genes chr3L_4_18515001 chr3L_18515001 EF78_1-HE 1971 chr3L 18528606 18528657 chr3L 18537793 18537844 roo 14 9187 3.5 1.5 2.5 4.0 9238 chr3L 18528606 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537844 intergenic not near genes chr3L_14_18530001 chr3L_18530001 EF78_1-HE 1974 chr3L 18593923 18593953 chr3L 18595929 18595934 Doc 4 2000 4.5 2.0 3.2 1.0 2011 chr3L 18593923 intergenic term - chr3L 18594928 intergenic not near genes chr3L 18595934 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 EF78_1-HE 1977 chr3L 18710756 18710784 chr3L 18718734 18718762 Stalker2 7 7978 4.0 6.5 5.2 1.1 8006 chr3L 18710756 intergenic not near genes chr3L 18714759 intergenic not near genes chr3L 18718762 intergenic not near genes chr3L_7_18710001 chr3L_18710001 EF78_1-HE 1981 chr3L 18772392 18772426 chr3L 18781099 18781133 roo 16 8706 7.5 5.5 6.5 2.1 8741 chr3L 18772392 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781133 intron ftz-f1 - chr3L_16_18775001 chr3L_18775001 EF78_1-HE 1984 chr3L 18833762 18833802 chr3L 18834952 18834992 1360 6 1190 2.5 2.5 2.5 1.7 1230 chr3L 18833762 intron Indy - chr3L 18834377 intron Indy - chr3L 18834992 intron Indy - chr3L_6_18830001 chr3L_18830001 EF78_1-HE 1993 chr3L 19008821 19008870 chr3L 19009185 19009234 jockey 18 363 2.5 8.0 5.2 2.9 413 chr3L 19008821 intron nkd - chr3L 19009028 intron nkd - chr3L 19009234 intron nkd - chr3L_18_19005001 chr3L_19005001 EF78_1-HE 1997 chr3L 19115631 19115663 chr3L 19115836 19115869 BS 8 206 4.0 4.5 4.2 1.5 238 chr3L 19115631 intron CG14082 - chr3L 19115750 intron CG14082 - chr3L 19115869 intron CG14082 - chr3L_8_19115001 chr3L_19115001 EF78_1-HE 1998 chr3L 19117030 19117064 chr3L 19124503 19124537 mdg1 11 7473 4.0 4.0 4.0 2.2 7507 chr3L 19117030 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124537 intron CG14082 - chr3L_11_19120001 chr3L_19120001 EF78_1-HE 2001 chr3L 19208034 19208090 chr3L 19209434 19209490 Doc 27 1400 5.0 4.5 4.8 4.7 1456 chr3L 19208034 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209490 intron fz2 - chr3L_27_19205001 chr3L_19205001 EF78_1-HE 2009 chr3L 19398913 19398930 chr3L 19403656 19403673 F-element 7 4743 3.0 6.5 4.8 1.2 4760 chr3L 19398913 intron CG32206 - chr3L 19401293 intron CG32206 - chr3L 19403673 intron CG32206 - chr3L_7_19400001 chr3L_19400001 EF78_1-HE 2016 chr3L 19820284 19820296 chr3L 19827859 19827871 412 4 7575 2.5 7.0 4.8 0.7 7587 chr3L 19820284 intron Deaf1 + chr3L 19824078 intron Deaf1 + chr3L 19827871 intron Deaf1 + chr3L_4_19820001 chr3L_19820001 EF78_1-HE 2017 chr3L 19861797 19861852 chr3L 19863611 19863666 S-element 8 1814 0.0 1.5 0.8 4.4 1869 chr3L 19861797 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863666 intergenic not near genes chr3L_8_19860001 chr3L_19860001 EF78_1-HE 2023 chr3L 20113649 20113682 chr3L 20122932 20122965 roo 9 9283 4.5 4.5 4.5 1.6 9316 chr3L 20113649 intergenic not near genes chr3L 20118307 intergenic not near genes chr3L 20122965 intergenic not near genes chr3L_9_20115001 chr3L_20115001 EF78_1-HE 2027 chr3L 20257315 20257360 chr3L 20258462 20258507 pogo 12 1145 1.5 5.0 3.2 2.9 1192 chr3L 20257315 intron rdgC + chr3L 20257911 intron rdgC + chr3L 20258507 intron rdgC + chr3L_12_20255001 chr3L_20255001 EF78_1-HE 2034 chr3L 20476755 20476778 chr3L 20484380 20484403 springer 6 7625 2.5 3.5 3.0 1.5 7648 chr3L 20476755 3` UTR isoQC + chr3L 20480579 intergenic not near genes chr3L 20484403 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 EF78_1-HE 2036 chr3L 20590041 20590097 chr3L 20590606 20590662 412 16 565 3.5 6.5 5.0 2.7 621 chr3L 20590041 intergenic not near genes chr3L 20590352 intergenic not near genes chr3L 20590662 intergenic not near genes chr3L_16_20590001 chr3L_20590001 EF78_1-HE 2039 chr3L 20821281 20821308 chr3L 20824776 20824803 NOF 8 3495 4.0 6.5 5.2 1.3 3522 chr3L 20821281 intron Pka-R1 + chr3L 20823042 intron Pka-R1 + chr3L 20824803 intron Pka-R1 + chr3L_8_20820001 chr3L_20820001 EF78_1-HE 2045 chr3L 21014900 21014947 chr3L 21023397 21023454 Tirant 25 8505 6.0 9.5 7.8 2.8 8554 chr3L 21014900 intron skd - chr3L 21019177 intron skd - chr3L 21023454 intron skd - chr3L_25_21015001 chr3L_21015001 EF78_1-HE 2050 chr3L 21151842 21151893 chr3L 21156952 21157003 flea 14 5109 4.5 3.0 3.8 2.9 5161 chr3L 21151842 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21157003 intron Ac78C - chr3L_14_21150001 chr3L_21150001 EF78_1-HE 2053 chr3L 21306122 21306175 chr3L 21315307 21315359 roo 10 9185 5.0 5.0 5.0 1.7 9237 chr3L 21306122 3` UTR CG7632 + chr3L 21310740 intron Pc - chr3L 21315359 3` UTR Pc - chr3L_10_21310001 chr3L_21310001 EF78_1-HE 2054 chr3L 21372698 21372748 chr3L 21379232 21379282 McClintock 18 6534 4.5 3.0 3.8 3.8 6584 chr3L 21372698 intergenic not near genes chr3L 21375990 intergenic not near genes chr3L 21379282 intergenic not near genes chr3L_18_21375001 chr3L_21375001 EF78_1-HE 2057 chr3L 21498845 21498870 chr3L 21500492 21500513 1360 4 1654 1.0 6.0 3.5 0.9 1668 chr3L 21498845 intron Glg1 - chr3L 21499679 intron Glg1 - chr3L 21500513 intron Glg1 - chr3L_4_21495001 chr3L_21495001 EF78_1-HE 2059 chr3L 21749296 21749339 chr3L 21754482 21754513 Doc 10 5183 3.5 3.0 3.2 2.4 5217 chr3L 21749296 intron Syn1 - chr3L 21751904 intron Syn1 - chr3L 21754513 intron Syn1 - chr3L_10_21750001 chr3L_21750001 EF78_1-HE 2065 chr3L 22099657 22099703 chr3L 22105869 22105915 3S18 11 6212 2.0 4.5 3.2 2.6 6258 chr3L 22099657 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105915 intergenic not near genes chr3L_11_22100001 chr3L_22100001 EF78_1-HE 2084 chr3L 22555748 22555795 chr3L 22563244 22563290 blood 20 7496 6.5 4.0 5.2 3.2 7542 chr3L 22555748 intergenic not near genes chr3L 22559519 intergenic not near genes chr3L 22563290 intergenic not near genes chr3L_20_22555001 chr3L_22555001 EF78_1-HE 2085 chr3L 22577596 22577640 chr3L 22582410 22582454 Doc 15 4814 3.5 3.0 3.2 3.6 4858 chr3L 22577596 intergenic not near genes chr3L 22580025 intergenic not near genes chr3L 22582454 3` UTR CG14459 - chr3L_15_22580001 chr3L_22580001 EF78_1-HE 2086 chr3L 22617167 22617211 chr3L 22624645 22624689 blood 14 7476 5.0 4.0 4.5 2.5 7522 chr3L 22617167 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624689 intron CG14459 - chr3L_14_22620001 chr3L_22620001 EF78_1-HE 2089 chr3L 22761364 22761409 chr3L 22766824 22766869 Ivk 16 5460 5.5 5.0 5.2 2.6 5505 chr3L 22761364 intron SPoCk + chr3L 22764116 intron SPoCk + chr3L 22766869 intron SPoCk + chr3L_16_22760001 chr3L_22760001 EF78_1-HE 2093 chr3L 22865965 22866000 chr3L 22867124 22867159 Doc 8 1159 4.0 3.5 3.8 1.7 1194 chr3L 22865965 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867159 intron CG33170 + chr3L_8_22865001 chr3L_22865001 EF78_1-HE 2097 chr3L 22989843 22989886 chr3L 22996843 22996886 297 4 7000 4.5 2.0 3.2 1.0 7043 chr3L 22989843 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996886 intergenic not near genes chr3L_4_22990001 chr3L_22990001 EF78_1-HE 2104 chr3L 23665508 23665528 chr3L 23665624 23665643 gypsy8 12 116 17.5 23.5 20.5 0.6 135 chr3L 23665508 intron AGO3 + chr3L 23665576 intron AGO3 + chr3L 23665643 intron AGO3 + chr3L_12_23665001 chr3L_23665001 EF78_1-HE 2105 chr3L 23848815 23848837 chr3L 23849663 23849687 R1A1-element 8 850 9.0 3.5 6.2 1.1 872 chr3L 23848815 intron CG40470 - chr3L 23849251 intron CG40470 - chr3L 23849687 intron CG40470 - chr3L_8_23845001 chr3L_23845001 EF78_1-HE 2106 chr3L 24012404 24012439 chr3L 24020771 24020806 roo 4 8367 1.5 2.0 1.8 1.4 8402 chr3L 24012404 intergenic not near genes chr3L 24016605 intergenic not near genes chr3L 24020806 intergenic not near genes chr3L_4_24015001 chr3L_24015001 EF78_1-HE 2107 chr3L 24021261 24021314 chr3L 24022444 24022497 1360 5 1183 1.5 2.0 1.8 1.8 1236 chr3L 24021261 intergenic not near genes chr3L 24021879 intergenic not near genes chr3L 24022497 intergenic not near genes chr3L_5_24020001 chr3L_24020001 EF78_1-HE 2109 chr3L 24168764 24168822 chr3L 24176118 24176176 ZAM 13 7350 2.0 2.5 2.2 4.1 7412 chr3L 24168764 intron Snap25 + chr3L 24172470 intron Snap25 + chr3L 24176176 intron Snap25 + chr3L_13_24170001 chr3L_24170001 EF78_1-HE 2112 chr3L 24791870 24791907 chr3L 24796674 24796712 Doc 7 4805 3.5 3.5 3.5 1.6 4842 chr3L 24791870 intergenic not near genes chr3L 24794291 intergenic not near genes chr3L 24796712 intergenic not near genes chr3L_7_24790001 chr3L_24790001 EF78_1-HE 2114 chr3L 24040804 24040823 chr3L 25396387 25396408 INE-1 5 1355583 3.5 10.5 7.0 0.6 1355604 chr3L 24040804 intergenic not near genes chr3L 24718606 intergenic not near genes chr3L 25396408 intergenic not near genes chr3L_5_24715001 chr3L_24715001 EF78_1-HE 2119 chr3L 25628499 25628512 chr3L 25633277 25633309 F-element 9 4790 7.0 3.0 5.0 1.5 4810 chr3L 25628499 intron CG41343 - chr3L 25630904 intron CG41343 - chr3L 25633309 intron CG41343 - chr3L_9_25630001 chr3L_25630001 EF78_1-HE 2135 chr3R 4366745 4366786 chr3R 4375154 4375195 roo 9 8409 3.0 7.0 5.0 1.5 8450 chr3R 4366745 3` UTR CG1090 + chr3R 4370970 intergenic not near genes chr3R 4375195 5` UTR CR44922 + chr3R_9_4370001 chr3R_4370001 EF78_1-HE 2136 chr3R 4408392 4408436 chr3R 4412722 4412766 Juan 9 4330 3.5 2.0 2.8 2.4 4374 chr3R 4408392 intron CG32944 - chr3R 4410579 intron CG32944 - chr3R 4412766 intron CG32944 - chr3R_9_4410001 chr3R_4410001 EF78_1-HE 2138 chr3R 4609523 4609572 chr3R 4610713 4610762 1360 14 1190 4.5 5.0 4.8 2.4 1239 chr3R 4609523 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610762 intergenic not near genes chr3R_14_4610001 chr3R_4610001 EF78_1-HE 2139 chr3R 4683155 4683210 chr3R 4684940 4684995 S-element 23 1785 6.5 8.0 7.2 2.8 1840 chr3R 4683155 intron CG43427 + chr3R 4684075 intron CG43427 + chr3R 4684995 intron CG43427 + chr3R_23_4680001 chr3R_4680001 EF78_1-HE 2140 chr3R 4753221 4753275 chr3R 4757550 4757555 F-element 8 4323 3.0 4.0 3.5 1.8 4334 chr3R 4753221 intron,intron atms +,CG44098 - chr3R 4755388 intron,intron atms +,CG44098 - chr3R 4757555 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 EF78_1-HE 2141 chr3R 4759704 4759739 chr3R 4761221 4761262 hopper2 11 1522 3.5 7.0 5.2 1.8 1558 chr3R 4759704 intron,intron atms +,CG44098 - chr3R 4760483 intron,intron atms +,CG44098 - chr3R 4761262 intron,intron atms +,CG44098 - chr3R_11_4760001 chr3R_4760001 EF78_1-HE 2143 chr3R 4887467 4887509 chr3R 4894866 4894912 rover 8 7401 3.5 5.0 4.2 1.5 7445 chr3R 4887467 intergenic not near genes chr3R 4891190 intergenic not near genes chr3R 4894912 intergenic not near genes chr3R_8_4890001 chr3R_4890001 EF78_1-HE 2152 chr3R 5045821 5045876 chr3R 5052949 5053004 HMS-Beagle 13 7128 5.0 3.0 4.0 2.6 7183 chr3R 5045821 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5053004 intergenic CR45588 - chr3R_13_5045001 chr3R_5045001 EF78_1-HE 2153 chr3R 5067956 5068005 chr3R 5073499 5073548 mdg3 7 5543 3.5 6.5 5.0 1.2 5592 chr3R 5067956 intergenic not near genes chr3R 5070752 intergenic not near genes chr3R 5073548 intergenic not near genes chr3R_7_5070001 chr3R_5070001 EF78_1-HE 2159 chr3R 5338375 5338421 chr3R 5343578 5343624 Rt1c 17 5203 11.0 9.5 10.2 1.5 5249 chr3R 5338375 intron mtd - chr3R 5341000 intron mtd - chr3R 5343624 intron mtd - chr3R_17_5340001 chr3R_5340001 EF78_1-HE 2163 chr3R 5445944 5445992 chr3R 5452430 5452478 Burdock 9 6486 3.5 4.0 3.8 1.9 6534 chr3R 5445944 intron CG14669 + chr3R 5449211 intron CG14669 + chr3R 5452478 intron CG14669 + chr3R_9_5445001 chr3R_5445001 EF78_1-HE 2167 chr3R 5746006 5746034 chr3R 5746273 5746301 pogo 4 267 1.0 5.0 3.0 1.0 295 chr3R 5746006 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746301 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 EF78_1-HE 2168 chr3R 5746993 5747046 chr3R 5753210 5753238 diver 6 6212 2.0 0.5 1.2 2.7 6245 chr3R 5746993 intergenic Madm + chr3R 5750116 intergenic not near genes chr3R 5753238 intergenic CG2091 - chr3R_6_5750001 chr3R_5750001 EF78_1-HE 2171 chr3R 5809086 5809142 chr3R 5809353 5809408 pogo 25 266 4.5 1.5 3.0 6.2 322 chr3R 5809086 3` UTR CG11000 + chr3R 5809247 3` UTR CG11000 + chr3R 5809408 3` UTR CG11000 + chr3R_25_5805001 chr3R_5805001 EF78_1-HE 2172 chr3R 5822356 5822406 chr3R 5823549 5823598 1360 8 1192 3.0 4.0 3.5 1.8 1242 chr3R 5822356 3` UTR CG2023 - chr3R 5822977 3` UTR CG2023 - chr3R 5823598 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 EF78_1-HE 2177 chr3R 5927551 5927575 chr3R 5927817 5927841 pogo 5 266 6.0 4.5 5.2 0.8 290 chr3R 5927551 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927841 intron CG34113 - chr3R_5_5925001 chr3R_5925001 EF78_1-HE 2181 chr3R 6015940 6015986 chr3R 6024447 6024493 Tirant 17 8506 2.5 5.0 3.8 3.5 8553 chr3R 6015940 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024493 intergenic not near genes chr3R_17_6020001 chr3R_6020001 EF78_1-HE 2182 chr3R 6121169 6121181 chr3R 6121413 6121421 BS 7 243 0.0 6.5 3.2 1.7 252 chr3R 6121169 intergenic not near genes chr3R 6121295 intergenic not near genes chr3R 6121421 intergenic not near genes chr3R_7_6120001 chr3R_6120001 EF78_1-HE 2185 chr3R 6158493 6158538 chr3R 6167102 6167147 Tirant 14 8606 3.5 6.0 4.8 2.4 8654 chr3R 6158493 intergenic not near genes chr3R 6162820 intergenic not near genes chr3R 6167147 intergenic CG1077 + chr3R_14_6160001 chr3R_6160001 EF78_1-HE 2186 chr3R 6175165 6175197 chr3R 6182463 6182495 HMS-Beagle2 5 7298 0.5 3.0 1.8 1.8 7330 chr3R 6175165 intergenic Osi1 + chr3R 6178830 intron CR45194 + chr3R 6182495 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 EF78_1-HE 2188 chr3R 6206279 6206311 chr3R 6206507 6206554 BS 11 240 3.5 2.5 3.0 2.8 275 chr3R 6206279 exon Osi24 + chr3R 6206416 intron Osi24 + chr3R 6206554 intron Osi24 + chr3R_11_6205001 chr3R_6205001 EF78_1-HE 2192 chr3R 6510005 6510048 chr3R 6515112 6515155 jockey 10 5107 3.0 3.0 3.0 2.5 5150 chr3R 6510005 intergenic not near genes chr3R 6512580 intergenic not near genes chr3R 6515155 intergenic not near genes chr3R_10_6510001 chr3R_6510001 EF78_1-HE 2200 chr3R 6737478 6737527 chr3R 6739291 6739340 Doc 16 1812 3.0 7.0 5.0 2.7 1862 chr3R 6737478 intron pb - chr3R 6738409 intron pb - chr3R 6739340 intron pb - chr3R_16_6735001 chr3R_6735001 EF78_1-HE 2233 chr3R 7694556 7694602 chr3R 7713654 7713700 invader3 14 19098 4.5 5.5 5.0 2.3 19144 chr3R 7694556 3` UTR Nlg1 + chr3R 7704128 intergenic not near genes chr3R 7713700 intergenic not near genes chr3R_14_7700001 chr3R_7700001 EF78_1-HE 2234 chr3R 7729446 7729489 chr3R 7737410 7737453 Stalker2 21 7964 8.5 7.5 8.0 2.3 8007 chr3R 7729446 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737453 intergenic not near genes chr3R_21_7730001 chr3R_7730001 EF78_1-HE 2237 chr3R 7849617 7849668 chr3R 7850810 7850857 1360 6 1190 1.5 3.0 2.2 1.9 1240 chr3R 7849617 intron CG34384 + chr3R 7850237 intron CG34384 + chr3R 7850857 intron CG34384 + chr3R_6_7850001 chr3R_7850001 EF78_1-HE 2240 chr3R 7973298 7973340 chr3R 7974386 7974428 1360 10 1088 1.5 4.0 2.8 2.6 1130 chr3R 7973298 intergenic not near genes chr3R 7973863 intergenic not near genes chr3R 7974428 3` UTR CD98hc - chr3R_10_7970001 chr3R_7970001 EF78_1-HE 2242 chr3R 8094394 8094423 chr3R 8099725 8099754 Transpac 10 5331 4.0 2.5 3.2 2.4 5360 chr3R 8094394 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099754 intron CG7900 + chr3R_10_8095001 chr3R_8095001 EF78_1-HE 2243 chr3R 8101738 8101785 chr3R 8104848 8104895 G2 9 3110 3.0 3.0 3.0 2.2 3157 chr3R 8101738 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104895 3` UTR CG7900 + chr3R_9_8100001 chr3R_8100001 EF78_1-HE 2244 chr3R 8207545 8207549 chr3R 8208416 8208416 F-element 4 870 9.0 2.5 5.8 0.6 871 chr3R 8207545 intergenic not near genes chr3R 8207980 intergenic not near genes chr3R 8208416 intergenic not near genes chr3R_4_8205001 chr3R_8205001 EF78_1-HE 2245 chr3R 8207550 8207571 chr3R 8208408 8208442 F-element 8 869 4.0 2.5 3.2 1.9 892 chr3R 8207550 intergenic not near genes chr3R 8207996 intergenic not near genes chr3R 8208442 intergenic not near genes chr3R_8_8205001 chr3R_8205001 EF78_1-HE 2250 chr3R 8402983 8403037 chr3R 8412171 8412229 roo 36 9191 14.0 8.5 11.2 3.0 9246 chr3R 8402983 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412229 intron CG45263 - chr3R_36_8405001 chr3R_8405001 EF78_1-HE 2254 chr3R 8570463 8570506 chr3R 8575125 8575165 HMS-Beagle 7 4662 3.0 5.0 4.0 1.4 4702 chr3R 8570463 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575165 intergenic not near genes chr3R_7_8570001 chr3R_8570001 EF78_1-HE 2256 chr3R 8601750 8601798 chr3R 8610929 8610977 roo 14 9179 5.5 5.5 5.5 2.2 9227 chr3R 8601750 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610977 intron 5-HT2B + chr3R_14_8605001 chr3R_8605001 EF78_1-HE 2260 chr3R 8707337 8707384 chr3R 8709804 8709828 jockey 22 2464 7.5 7.0 7.2 2.7 2491 chr3R 8707337 intergenic not near genes chr3R 8708582 intergenic not near genes chr3R 8709828 intergenic not near genes chr3R_22_8705001 chr3R_8705001 EF78_1-HE 2266 chr3R 8894849 8894897 chr3R 8896031 8896079 1360 13 1182 7.0 5.5 6.2 1.8 1230 chr3R 8894849 intron pyd - chr3R 8895464 intron pyd - chr3R 8896079 intron pyd - chr3R_13_8895001 chr3R_8895001 EF78_1-HE 2275 chr3R 9278763 9278790 chr3R 9284049 9284076 Rt1a 8 5286 6.5 4.0 5.2 1.3 5313 chr3R 9278763 intergenic not near genes chr3R 9281420 intergenic not near genes chr3R 9284076 intergenic not near genes chr3R_8_9280001 chr3R_9280001 EF78_1-HE 2277 chr3R 9319553 9319600 chr3R 9320014 9320061 jockey 8 461 4.0 4.5 4.2 1.5 508 chr3R 9319553 intron CG8861 - chr3R 9319807 intron CG8861 - chr3R 9320061 intron CG8861 - chr3R_8_9315001 chr3R_9315001 EF78_1-HE 2280 chr3R 9361814 9361825 chr3R 9362081 9362092 pogo 6 267 5.0 4.5 4.8 1.0 278 chr3R 9361814 3` UTR CG45050 + chr3R 9361953 3` UTR CG45050 + chr3R 9362092 3` UTR CG45050 + chr3R_6_9360001 chr3R_9360001 EF78_1-HE 2281 chr3R 9361829 9361845 chr3R 9362086 9362112 pogo 5 264 2.0 5.0 3.5 1.1 283 chr3R 9361829 3` UTR CG45050 + chr3R 9361970 3` UTR CG45050 + chr3R 9362112 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 EF78_1-HE 2285 chr3R 9699956 9699995 chr3R 9700071 9700110 1360 10 115 10.5 4.5 7.5 1.2 154 chr3R 9699956 intron Unc-115a - chr3R 9700033 intron Unc-115a - chr3R 9700110 intron Unc-115a - chr3R_10_9700001 chr3R_9700001 EF78_1-HE 2297 chr3R 10231763 10231812 chr3R 10237366 10237415 mdg3 14 5602 2.5 3.5 3.0 3.5 5652 chr3R 10231763 intron CG42795 + chr3R 10234589 intron CG42795 + chr3R 10237415 intron CG42795 + chr3R_14_10230001 chr3R_10230001 EF78_1-HE 2309 chr3R 10804167 10804192 chr3R 10811722 10811750 17.6 5 7557 1.0 2.5 1.8 1.8 7583 chr3R 10804167 intergenic CG14692 - chr3R 10807958 intergenic not near genes chr3R 10811750 3` UTR CG14693 - chr3R_5_10805001 chr3R_10805001 EF78_1-HE 2316 chr3R 10957838 10957885 chr3R 10963253 10963300 Rt1c 16 5414 4.5 1.0 2.8 4.2 5462 chr3R 10957838 intergenic not near genes chr3R 10960569 intergenic not near genes chr3R 10963300 intergenic not near genes chr3R_16_10960001 chr3R_10960001 EF78_1-HE 2329 chr3R 11379211 11379251 chr3R 11388392 11388432 roo 21 9181 10.0 8.0 9.0 2.1 9221 chr3R 11379211 intron pros + chr3R 11383822 intron pros + chr3R 11388432 intron pros + chr3R_21_11380001 chr3R_11380001 EF78_1-HE 2345 chr3R 12022858 12022906 chr3R 12025061 12025109 pogo 10 2203 2.5 5.5 4.0 2.0 2251 chr3R 12022858 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025109 intergenic not near genes chr3R_10_12020001 chr3R_12020001 EF78_1-HE 2371 chr3R 12920134 12920178 chr3R 12925363 12925406 copia 15 5229 7.0 7.5 7.2 1.8 5272 chr3R 12920134 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925406 intron beat-Vb + chr3R_15_12920001 chr3R_12920001 EF78_1-HE 2377 chr3R 13135810 13135852 chr3R 13138001 13138043 pogo 10 2191 0.0 1.5 0.8 5.6 2233 chr3R 13135810 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136926 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138043 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13135001 chr3R_13135001 EF78_1-HE 2378 chr3R 13143015 13143064 chr3R 13148616 13148665 mdg3 11 5597 4.5 6.5 5.5 1.7 5650 chr3R 13143015 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148665 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_11_13145001 chr3R_13145001 EF78_1-HE 2397 chr3R 14021622 14021676 chr3R 14023465 14023519 S-element 17 1843 4.0 3.0 3.5 3.8 1897 chr3R 14021622 intron rdx - chr3R 14022570 intron rdx - chr3R 14023519 intron rdx - chr3R_17_14020001 chr3R_14020001 EF78_1-HE 2408 chr3R 14180795 14180812 chr3R 14185582 14185603 F-element 6 4790 11.5 3.0 7.2 0.7 4808 chr3R 14180795 intron Dop1R1 - chr3R 14183199 intron Dop1R1 - chr3R 14185603 intron Dop1R1 - chr3R_6_14180001 chr3R_14180001 EF78_1-HE 2410 chr3R 14246370 14246417 chr3R 14247892 14247939 jockey 7 1522 3.0 2.5 2.8 1.8 1569 chr3R 14246370 intergenic not near genes chr3R 14247154 intergenic not near genes chr3R 14247939 intergenic not near genes chr3R_7_14245001 chr3R_14245001 EF78_1-HE 2436 chr3R 15041403 15041453 chr3R 15045197 15045247 Doc 23 3793 1.0 5.0 3.0 5.8 3844 chr3R 15041403 intergenic not near genes chr3R 15043325 intergenic not near genes chr3R 15045247 intergenic not near genes chr3R_23_15040001 chr3R_15040001 EF78_1-HE 2437 chr3R 15079792 15079838 chr3R 15080059 15080105 pogo 6 267 3.0 4.0 3.5 1.3 313 chr3R 15079792 3` UTR CG6966 - chr3R 15079948 3` UTR CG6966 - chr3R 15080105 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 EF78_1-HE 2439 chr3R 15102489 15102525 chr3R 15109771 15109805 412 9 7281 2.5 3.0 2.8 2.4 7316 chr3R 15102489 intron CG42788 - chr3R 15106147 intron CG42788 - chr3R 15109805 intron CG42788 - chr3R_9_15105001 chr3R_15105001 EF78_1-HE 2441 chr3R 15132039 15132066 chr3R 15135125 15135152 Juan 12 3086 9.5 8.5 9.0 1.2 3113 chr3R 15132039 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135152 3` UTR CG6912 - chr3R_12_15130001 chr3R_15130001 EF78_1-HE 2443 chr3R 15162543 15162575 chr3R 15167336 15167368 F-element 7 4793 2.0 9.0 5.5 1.1 4825 chr3R 15162543 intron Gyc88E + chr3R 15164956 intron Gyc88E + chr3R 15167368 intron Gyc88E + chr3R_7_15160001 chr3R_15160001 EF78_1-HE 2452 chr3R 15601153 15601186 chr3R 15608701 15608734 412 7 7548 9.5 6.0 7.8 0.8 7581 chr3R 15601153 intergenic not near genes chr3R 15604944 intergenic not near genes chr3R 15608734 intergenic not near genes chr3R_7_15600001 chr3R_15600001 EF78_1-HE 2453 chr3R 15618726 15618756 chr3R 15626226 15626256 blood 16 7499 3.5 6.5 5.0 2.7 7530 chr3R 15618726 intergenic not near genes chr3R 15622491 intergenic not near genes chr3R 15626256 intergenic not near genes chr3R_16_15620001 chr3R_15620001 EF78_1-HE 2459 chr3R 15735219 15735237 chr3R 15739965 15739983 F-element 11 4746 5.5 5.5 5.5 1.7 4764 chr3R 15735219 intergenic not near genes chr3R 15737601 intergenic not near genes chr3R 15739983 intergenic not near genes chr3R_11_15735001 chr3R_15735001 EF78_1-HE 2469 chr3R 16189382 16189423 chr3R 16189811 16189852 invader4 7 429 5.0 1.0 3.0 1.8 470 chr3R 16189382 intron sra + chr3R 16189617 intron sra + chr3R 16189852 intron sra + chr3R_7_16185001 chr3R_16185001 EF78_1-HE 2478 chr3R 16756296 16756346 chr3R 16762513 16762563 diver 11 6217 5.0 1.0 3.0 2.8 6267 chr3R 16756296 intron bxd - chr3R 16759430 intron bxd - chr3R 16762563 intron bxd - chr3R_11_16755001 chr3R_16755001 EF78_1-HE 2492 chr3R 17294648 17294696 chr3R 17295102 17295149 BS 7 454 2.5 6.5 4.5 1.3 501 chr3R 17294648 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295149 intergenic not near genes chr3R_7_17290001 chr3R_17290001 EF78_1-HE 2495 chr3R 17346675 17346714 chr3R 17348264 17348303 F-element 7 1588 1.0 5.5 3.2 1.7 1628 chr3R 17346675 intron beat-IIa - chr3R 17347489 intron beat-IIa - chr3R 17348303 intron beat-IIa - chr3R_7_17345001 chr3R_17345001 EF78_1-HE 2505 chr3R 17591275 17591311 chr3R 17591737 17591773 F-element 5 461 5.5 1.0 3.2 1.2 498 chr3R 17591275 intergenic not near genes chr3R 17591524 intergenic not near genes chr3R 17591773 intergenic not near genes chr3R_5_17590001 chr3R_17590001 EF78_1-HE 2509 chr3R 17638329 17638344 chr3R 17638841 17638856 roo 4 512 2.5 6.5 4.5 0.7 527 chr3R 17638329 intron CG43175 + chr3R 17638592 intron CG43175 + chr3R 17638856 intron,intron CG43175 +,CR45222 + chr3R_4_17635001 chr3R_17635001 EF78_1-HE 2522 chr3R 17925825 17925884 chr3R 17927318 17927367 hobo 16 1490 5.0 5.5 5.2 2.6 1542 chr3R 17925825 intron cpo + chr3R 17926596 intron cpo + chr3R 17927367 intron cpo + chr3R_16_17925001 chr3R_17925001 EF78_1-HE 2528 chr3R 18061566 18061600 chr3R 18063160 18063194 F-element 6 1594 4.5 3.0 3.8 1.2 1628 chr3R 18061566 intergenic not near genes chr3R 18062380 intergenic not near genes chr3R 18063194 intergenic not near genes chr3R_6_18060001 chr3R_18060001 EF78_1-HE 2544 chr3R 18606505 18606528 chr3R 18610750 18610776 F-element 7 4248 2.5 0.5 1.5 2.8 4271 chr3R 18606505 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610776 intron,intron qin +,CG14304 - chr3R_7_18605001 chr3R_18605001 EF78_1-HE 2602 chr3R 20109513 20109562 chr3R 20114743 20114794 copia 9 5230 4.0 3.0 3.5 2.0 5281 chr3R 20109513 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114794 intergenic CG10887 + chr3R_9_20110001 chr3R_20110001 EF78_1-HE 2603 chr3R 20156674 20156715 chr3R 20165870 20165910 roo 10 9196 3.0 3.5 3.2 2.4 9236 chr3R 20156674 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165910 intergenic not near genes chr3R_10_20160001 chr3R_20160001 EF78_1-HE 2605 chr3R 20245258 20245303 chr3R 20248906 20248950 F-element 13 3648 3.5 0.0 1.8 4.6 3692 chr3R 20245258 3` UTR Nlg4 + chr3R 20247104 intergenic not near genes chr3R 20248950 intergenic not near genes chr3R_13_20245001 chr3R_20245001 EF78_1-HE 2606 chr3R 20266490 20266535 chr3R 20272987 20273032 Burdock 17 6497 4.0 6.5 5.2 2.7 6542 chr3R 20266490 intron cic + chr3R 20269761 intron cic + chr3R 20273032 intron cic + chr3R_17_20265001 chr3R_20265001 EF78_1-HE 2611 chr3R 20330988 20331027 chr3R 20331499 20331539 roo 7 512 2.0 2.0 2.0 2.3 551 chr3R 20330988 intergenic Sirt2 + chr3R 20331264 intergenic Sirt2 + chr3R 20331539 intergenic not near genes chr3R_7_20330001 chr3R_20330001 EF78_1-HE 2623 chr3R 20506566 20506602 chr3R 20507394 20507431 BS 10 829 0.0 4.0 2.0 3.3 865 chr3R 20506566 intergenic Or92a + chr3R 20506998 intergenic CG4288 - chr3R 20507431 3` UTR CG4288 - chr3R_10_20505001 chr3R_20505001 EF78_1-HE 2624 chr3R 20512979 20513027 chr3R 20515708 20515756 opus 8 2729 1.5 1.0 1.2 3.6 2777 chr3R 20512979 intergenic not near genes chr3R 20514368 intergenic not near genes chr3R 20515756 intergenic not near genes chr3R_8_20510001 chr3R_20510001 EF78_1-HE 2633 chr3R 20854449 20854495 chr3R 20859266 20859311 Doc 7 4815 0.0 2.5 1.2 3.2 4862 chr3R 20854449 intron Ir93a - chr3R 20856880 intron Ir93a - chr3R 20859311 exon Ir93a - chr3R_7_20855001 chr3R_20855001 EF78_1-HE 2636 chr3R 21141649 21141705 chr3R 21150156 21150211 Tirant 9 8506 5.0 6.0 5.5 1.4 8562 chr3R 21141649 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150211 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 EF78_1-HE 2646 chr3R 21609001 21609034 chr3R 21611661 21611694 NOF 6 2660 3.0 5.0 4.0 1.2 2693 chr3R 21609001 intron InR - chr3R 21610348 intron InR - chr3R 21611694 intron InR - chr3R_6_21610001 chr3R_21610001 EF78_1-HE 2654 chr3R 21761107 21761150 chr3R 21768524 21768568 mdg1 11 7418 3.0 3.0 3.0 2.8 7461 chr3R 21761107 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768568 exon CG42335 + chr3R_11_21760001 chr3R_21760001 EF78_1-HE 2669 chr3R 22234661 22234715 chr3R 22236006 22236060 pogo 4 1345 1.5 2.5 2.0 1.3 1399 chr3R 22234661 intron SKIP + chr3R 22235360 intron SKIP + chr3R 22236060 intron SKIP + chr3R_4_22235001 chr3R_22235001 EF78_1-HE 2670 chr3R 22239475 22239519 chr3R 22248561 22248593 roo 5 9076 1.0 0.5 0.8 2.8 9118 chr3R 22239475 intron SKIP + chr3R 22244034 intron SKIP + chr3R 22248593 intron SKIP + chr3R_5_22240001 chr3R_22240001 EF78_1-HE 2681 chr3R 22450540 22450573 chr3R 22453187 22453239 NOF 13 2663 4.0 5.5 4.8 2.2 2699 chr3R 22450540 intron CG34376 + chr3R 22451890 intron CG34376 + chr3R 22453239 intron CG34376 + chr3R_13_22450001 chr3R_22450001 EF78_1-HE 2697 chr3R 22881215 22881229 chr3R 22884946 22884960 Doc 7 3731 3.5 6.0 4.8 1.2 3745 chr3R 22881215 intergenic not near genes chr3R 22883088 intergenic not near genes chr3R 22884960 intergenic not near genes chr3R_7_22880001 chr3R_22880001 EF78_1-HE 2712 chr3R 23558377 23558427 chr3R 23560184 23560234 Bari1 10 1807 4.0 3.0 3.5 2.2 1857 chr3R 23558377 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560234 intron beat-IV + chr3R_10_23555001 chr3R_23555001 EF78_1-HE 2719 chr3R 23684670 23684720 chr3R 23685182 23685232 roo 11 508 4.0 4.5 4.2 2.1 562 chr3R 23684670 exon CG18754 + chr3R 23684951 intron CG18754 + chr3R 23685232 exon CG18754 + chr3R_11_23680001 chr3R_23680001 EF78_1-HE 2722 chr3R 23835384 23835434 chr3R 23844558 23844610 roo 13 9176 4.5 8.0 6.2 1.8 9226 chr3R 23835384 intron CG34355 + chr3R 23839997 intron CG34355 + chr3R 23844610 intron CG34355 + chr3R_13_23835001 chr3R_23835001 EF78_1-HE 2723 chr3R 23851064 23851076 chr3R 23858757 23858769 opus 6 7692 3.5 5.5 4.5 1.1 7705 chr3R 23851064 3` UTR CG34355 + chr3R 23854916 intergenic not near genes chr3R 23858769 intergenic not near genes chr3R_6_23850001 chr3R_23850001 EF78_1-HE 2733 chr3R 24072061 24072122 chr3R 24072524 24072584 jockey 12 463 9.0 0.0 4.5 2.2 523 chr3R 24072061 intron 4EHP - chr3R 24072322 intron 4EHP - chr3R 24072584 intron 4EHP - chr3R_12_24070001 chr3R_24070001 EF78_1-HE 2735 chr3R 24076895 24076920 chr3R 24078388 24078408 hobo 4 1492 5.0 1.5 3.2 1.0 1513 chr3R 24076895 intron 4EHP - chr3R 24077652 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_4_24075001 chr3R_24075001 EF78_1-HE 2736 chr3R 24076923 24076935 chr3R 24078407 24078428 hobo 4 1490 5.0 3.5 4.2 0.8 1505 chr3R 24076923 intron 4EHP - chr3R 24077676 intron 4EHP - chr3R 24078428 intron 4EHP - chr3R_4_24075001 chr3R_24075001 EF78_1-HE 2741 chr3R 24207209 24207228 chr3R 24212313 24212332 flea 5 5103 4.5 8.0 6.2 0.7 5123 chr3R 24207209 intron twin - chr3R 24209770 intron twin - chr3R 24212332 intron twin - chr3R_5_24205001 chr3R_24205001 EF78_1-HE 2748 chr3R 24493273 24493305 chr3R 24493528 24493560 BS 15 254 6.5 7.5 7.0 1.9 287 chr3R 24493273 intergenic not near genes chr3R 24493416 intergenic not near genes chr3R 24493560 intergenic not near genes chr3R_15_24490001 chr3R_24490001 EF78_1-HE 2750 chr3R 24594652 24594668 chr3R 24594918 24594934 pogo 5 265 2.0 13.5 7.8 0.6 282 chr3R 24594652 intron mld + chr3R 24594793 intron mld + chr3R 24594934 intron mld + chr3R_5_24590001 chr3R_24590001 EF78_1-HE 2755 chr3R 24730075 24730092 chr3R 24732479 24732496 Doc 6 2404 7.5 0.0 3.8 1.2 2421 chr3R 24730075 intron tok + chr3R 24731286 intron tok + chr3R 24732496 intron tok + chr3R_6_24730001 chr3R_24730001 EF78_1-HE 2759 chr3R 24927106 24927164 chr3R 24931923 24931935 Doc 10 4812 0.5 4.0 2.2 3.1 4829 chr3R 24927106 intergenic Trf4-2 + chr3R 24929520 intergenic not near genes chr3R 24931935 intergenic CG11771 + chr3R_10_24925001 chr3R_24925001 EF78_1-HE 2776 chr3R 25725805 25725860 chr3R 25734991 25735046 roo 11 9186 1.5 2.5 2.0 3.7 9241 chr3R 25725805 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735046 intron LpR2 - chr3R_11_25730001 chr3R_25730001 EF78_1-HE 2778 chr3R 25832673 25832720 chr3R 25841881 25841928 roo 9 9207 4.0 7.0 5.5 1.4 9255 chr3R 25832673 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841928 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 EF78_1-HE 2792 chr3R 26376303 26376341 chr3R 26385489 26385527 roo 6 9186 5.0 0.0 2.5 1.7 9224 chr3R 26376303 intergenic not near genes chr3R 26380915 intergenic not near genes chr3R 26385527 intergenic not near genes chr3R_6_26380001 chr3R_26380001 EF78_1-HE 2795 chr3R 26510480 26510530 chr3R 26519567 26519617 roo 17 9087 7.0 6.0 6.5 2.3 9137 chr3R 26510480 intron plum - chr3R 26515048 intron plum - chr3R 26519617 intron,5` UTR plum -,CR45226 + chr3R_17_26515001 chr3R_26515001 EF78_1-HE 2796 chr3R 26558309 26558352 chr3R 26565647 26565689 Stalker4 11 7336 3.5 6.5 5.0 1.8 7380 chr3R 26558309 intron scrib + chr3R 26561999 intron scrib + chr3R 26565689 intron scrib + chr3R_11_26560001 chr3R_26560001 EF78_1-HE 2803 chr3R 26810529 26810579 chr3R 26811040 26811090 roo 8 511 3.5 2.5 3.0 2.0 561 chr3R 26810529 intron Tl + chr3R 26810810 intron Tl + chr3R 26811090 intron Tl + chr3R_8_26810001 chr3R_26810001 EF78_1-HE 2813 chr3R 27007386 27007435 chr3R 27016547 27016596 roo 17 9159 6.0 5.0 5.5 2.6 9210 chr3R 27007386 intron RYa-R + chr3R 27011991 intron RYa-R + chr3R 27016596 intron RYa-R + chr3R_17_27010001 chr3R_27010001 EF78_1-HE 2821 chr3R 27140488 27140542 chr3R 27148124 27148178 412 29 7636 6.5 4.5 5.5 4.5 7690 chr3R 27140488 intron CG6051 - chr3R 27144333 intron CG6051 - chr3R 27148178 intron CG6051 - chr3R_29_27140001 chr3R_27140001 EF78_1-HE 2828 chr3R 27342770 27342819 chr3R 27351377 27351426 Tirant 8 8604 2.5 2.0 2.2 2.5 8656 chr3R 27342770 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351426 intron CG42534 + chr3R_8_27345001 chr3R_27345001 EF78_1-HE 2848 chr3R 27856734 27856789 chr3R 27858243 27858298 hopper2 18 1509 7.5 10.0 8.8 1.8 1564 chr3R 27856734 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858298 intron CG34353 - chr3R_18_27855001 chr3R_27855001 EF78_1-HE 2849 chr3R 27862932 27862972 chr3R 27868263 27868303 Transpac 12 5330 2.0 10.5 6.2 1.7 5371 chr3R 27862932 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868303 intron CG34353 - chr3R_12_27865001 chr3R_27865001 EF78_1-HE 2850 chr3R 27875692 27875724 chr3R 27882773 27882805 297 14 7081 5.0 10.5 7.8 1.6 7113 chr3R 27875692 intron CG34353 - chr3R 27879248 intron CG34353 - chr3R 27882805 intron CG34353 - chr3R_14_27875001 chr3R_27875001 EF78_1-HE 2860 chr3R 28068482 28068523 chr3R 28073940 28073991 I-element 7 5467 0.0 3.0 1.5 2.8 5509 chr3R 28068482 intron CG34362 + chr3R 28071236 intron CG34362 + chr3R 28073991 intron CG34362 + chr3R_7_28070001 chr3R_28070001 EF78_1-HE 2864 chr3R 28173654 28173701 chr3R 28181110 28181157 mdg1 6 7456 1.5 3.0 2.2 1.9 7503 chr3R 28173654 intron CG34354 + chr3R 28177406 intron CG34354 + chr3R 28181157 intron CG34354 + chr3R_6_28175001 chr3R_28175001 EF78_1-HE 2867 chr3R 28253319 28253368 chr3R 28255855 28255904 jockey 19 2536 6.5 5.5 6.0 2.7 2585 chr3R 28253319 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255904 intergenic not near genes chr3R_19_28250001 chr3R_28250001 EF78_1-HE 2875 chr3R 28758262 28758276 chr3R 28763905 28763919 roo 5 5643 6.5 0.0 3.2 1.2 5657 chr3R 28758262 intergenic aqrs - chr3R 28761090 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_5_28760001 chr3R_28760001 EF78_1-HE 2876 chr3R 28758296 28758305 chr3R 28771329 28771337 Stalker4 4 13033 3.0 0.0 1.5 1.6 13041 chr3R 28758296 intergenic aqrs - chr3R 28764816 intergenic not near genes chr3R 28771337 intergenic not near genes chr3R_4_28760001 chr3R_28760001 EF78_1-HE 2877 chr3R 28792857 28792901 chr3R 28797965 28798022 jockey 10 5119 2.5 3.0 2.8 2.6 5165 chr3R 28792857 intergenic not near genes chr3R 28795440 intergenic not near genes chr3R 28798022 intergenic not near genes chr3R_10_28795001 chr3R_28795001 EF78_1-HE 2891 chr3R 29079358 29079407 chr3R 29080756 29080805 NOF 21 1397 1.5 4.0 2.8 5.5 1447 chr3R 29079358 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080805 intron CG11873 + chr3R_21_29080001 chr3R_29080001 EF78_1-HE 2905 chr3R 29319809 29319837 chr3R 29320154 29320182 jockey 4 344 3.0 2.5 2.8 1.1 373 chr3R 29319809 intergenic Cnx99A - chr3R 29319996 intergenic Cnx99A - chr3R 29320182 intergenic not near genes chr3R_4_29315001 chr3R_29315001 EF78_1-HE 2926 chr3R 29760339 29760382 chr3R 29761566 29761609 pogo 7 1227 2.0 2.0 2.0 2.3 1270 chr3R 29760339 intergenic not near genes chr3R 29760974 intergenic not near genes chr3R 29761609 intergenic not near genes chr3R_7_29760001 chr3R_29760001 EF78_1-HE 2931 chr3R 29881996 29882045 chr3R 29891179 29891228 roo 8 9183 2.0 2.5 2.2 2.5 9232 chr3R 29881996 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891228 intron CG31038 + chr3R_8_29885001 chr3R_29885001 EF78_1-HE 2939 chr3R 30238737 30238765 chr3R 30239927 30239956 1360 6 1190 0.5 0.0 0.2 5.0 1219 chr3R 30238737 intergenic not near genes chr3R 30239346 intergenic not near genes chr3R 30239956 intergenic not near genes chr3R_6_30235001 chr3R_30235001 EF78_1-HE 2943 chr3R 30317306 30317351 chr3R 30324915 30324969 roo 6 7616 2.5 1.0 1.8 2.1 7663 chr3R 30317306 intron hdc + chr3R 30321138 intron hdc + chr3R 30324969 intron hdc + chr3R_6_30320001 chr3R_30320001 EF78_1-HE 2947 chr3R 30396195 30396242 chr3R 30404487 30404534 roo 11 8292 4.0 2.5 3.2 2.6 8339 chr3R 30396195 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404534 5` UTR CR45570 + chr3R_11_30400001 chr3R_30400001 EF78_1-HE 2952 chr3R 30480458 30480480 chr3R 30482952 30482974 jockey 5 2494 5.0 0.0 2.5 1.4 2516 chr3R 30480458 intron PH4alphaEFB + chr3R 30481716 intron PH4alphaEFB + chr3R 30482974 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 EF78_1-HE 2959 chr3R 30679495 30679548 chr3R 30686990 30687043 blood 14 7493 4.0 4.5 4.2 2.7 7548 chr3R 30679495 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687043 intergenic not near genes chr3R_14_30680001 chr3R_30680001 EF78_1-HE 2964 chr3R 30818787 30818825 chr3R 30820378 30820416 1360 11 1591 3.0 2.5 2.8 2.9 1629 chr3R 30818787 intron cindr + chr3R 30819602 intron cindr + chr3R 30820416 intron cindr + chr3R_11_30815001 chr3R_30815001 EF78_1-HE 2970 chr3R 31074216 31074250 chr3R 31081840 31081874 springer 4 7624 4.5 8.0 6.2 0.6 7658 chr3R 31074216 intron Sox100B + chr3R 31078045 intron Sox100B + chr3R 31081874 intron Sox100B + chr3R_4_31075001 chr3R_31075001 EF78_1-HE 2971 chr3R 31279361 31279395 chr3R 31285578 31285612 diver 6 6217 6.5 4.0 5.2 1.0 6251 chr3R 31279361 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285612 intergenic not near genes chr3R_6_31280001 chr3R_31280001 EF78_1-HE 2973 chr3R 31413064 31413094 chr3R 31418290 31418303 copia 5 5223 8.0 0.0 4.0 1.0 5239 chr3R 31413064 intron Gprk2 + chr3R 31415684 intron Gprk2 + chr3R 31418303 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 EF78_1-HE 2982 chr3R 31691519 31691559 chr3R 31696311 31696351 Doc 11 4792 4.5 6.5 5.5 1.7 4832 chr3R 31691519 intergenic not near genes chr3R 31693935 intergenic not near genes chr3R 31696351 intergenic not near genes chr3R_11_31690001 chr3R_31690001 EF78_1-HE 2991 chr3R 31997973 31998017 chr3R 32005469 32005513 blood 12 7494 3.5 7.0 5.2 1.9 7540 chr3R 31997973 intron heph - chr3R 32001743 intron heph - chr3R 32005513 intron heph - chr3R_12_32000001 chr3R_32000001 EF78_1-HE 2992 chr4 76477 76517 chr4 81946 81966 I-element 8 5466 4.5 4.0 4.2 1.5 5489 chr4 76477 intron pan + chr4 79222 intron pan + chr4 81966 intron pan + chr4_8_75001 chr4_75001 EF78_1-HE 2998 chr4 671582 671629 chr4 680191 680238 Tirant 22 8608 4.5 7.5 6.0 3.1 8656 chr4 671582 intron CG11360 + chr4 675910 intron CG11360 + chr4 680238 intron CG11360 + chr4_22_675001 chr4_675001 EF78_1-HE 3005 chrX 295830 295878 chrX 303476 303524 412 21 7646 3.5 5.5 4.5 3.8 7694 chrX 295830 intron CG3777 + chrX 299677 intron CG3777 + chrX 303524 intron CG3777 + chrX_21_295001 chrX_295001 EF78_1-HE 3006 chrX 318454 318496 chrX 323566 323608 flea 23 5111 6.0 12.5 9.2 2.3 5154 chrX 318454 intron,intron CG3777 +,CG32816 - chrX 321031 intron,intron CG3777 +,CG32816 - chrX 323608 intron,intron CG3777 +,CG32816 - chrX_23_320001 chrX_320001 EF78_1-HE 3007 chrX 428399 428448 chrX 434609 434633 3S18 13 6209 4.0 5.5 4.8 2.2 6234 chrX 428399 intron CG32816 - chrX 431516 intron CG32816 - chrX 434633 intron CG32816 - chrX_13_430001 chrX_430001 EF78_1-HE 3011 chrX 551407 551453 chrX 558995 559041 412 32 7587 5.5 12.0 8.8 3.3 7634 chrX 551407 intron Appl + chrX 555224 intron Appl + chrX 559041 intron Appl + chrX_32_555001 chrX_555001 EF78_1-HE 3020 chrX 827578 827625 chrX 835396 835443 roo 14 7816 6.5 4.0 5.2 2.3 7865 chrX 827578 intron CG43867 - chrX 831510 intron CG43867 - chrX 835443 intron CG43867 - chrX_14_830001 chrX_830001 EF78_1-HE 3023 chrX 906675 906733 chrX 908490 908548 S-element 13 1814 3.0 4.5 3.8 2.7 1873 chrX 906675 intron CG43867 - chrX 907612 intron CG43867 - chrX 908548 intron CG43867 - chrX_13_905001 chrX_905001 EF78_1-HE 3027 chrX 1357761 1357791 chrX 1367957 1367987 Doc 10 10196 5.0 4.0 4.5 1.8 10226 chrX 1357761 intergenic png - chrX 1362874 intergenic not near genes chrX 1367987 intergenic not near genes chrX_10_1360001 chrX_1360001 EF78_1-HE 3029 chrX 1518022 1518068 chrX 1523450 1523496 jockey 7 5428 3.0 5.0 4.0 1.4 5474 chrX 1518022 intergenic inc + chrX 1520759 intergenic not near genes chrX 1523496 intergenic not near genes chrX_7_1520001 chrX_1520001 EF78_1-HE 3032 chrX 1627964 1627976 chrX 1635458 1635470 gtwin 7 7494 16.0 8.5 12.2 0.5 7506 chrX 1627964 intron,intron Mur2B -,br + chrX 1631717 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 EF78_1-HE 3038 chrX 1930509 1930568 chrX 1938106 1938165 opus 9 7597 1.0 3.0 2.0 3.0 7656 chrX 1930509 3` UTR CG11596 + chrX 1934337 intergenic not near genes chrX 1938165 3` UTR CG3857 - chrX_9_1930001 chrX_1930001 EF78_1-HE 3039 chrX 1954883 1954916 chrX 1962849 1962880 Stalker2 8 7965 1.5 3.5 2.5 2.3 7997 chrX 1954883 intron Hr4 + chrX 1958882 intron Hr4 + chrX 1962880 intron Hr4 + chrX_8_1955001 chrX_1955001 EF78_1-HE 3048 chrX 2399812 2399871 chrX 2408191 2408238 roo 8 8374 7.5 0.0 3.8 1.7 8426 chrX 2399812 intergenic not near genes chrX 2404025 intergenic not near genes chrX 2408238 intergenic not near genes chrX_8_2400001 chrX_2400001 EF78_1-HE 3058 chrX 2664346 2664403 chrX 2665528 2665591 1360 29 1183 4.5 0.0 2.2 9.1 1245 chrX 2664346 intron sgg + chrX 2664968 intron sgg + chrX 2665591 intron sgg + chrX_29_2660001 chrX_2660001 EF78_1-HE 3060 chrX 2844877 2844931 chrX 2852313 2852367 mdg1 20 7433 4.0 5.0 4.5 3.6 7490 chrX 2844877 intron kirre + chrX 2848622 intron kirre + chrX 2852367 intron kirre + chrX_20_2845001 chrX_2845001 EF78_1-HE 3078 chrX 3414997 3415023 chrX 3421208 3421234 3S18 7 6209 2.0 2.0 2.0 2.3 6237 chrX 3414997 intron,intron CR44999 +,CG12535 - chrX 3418116 intron,intron CR44999 +,CG12535 - chrX 3421234 intron,intron CR44999 +,CG12535 - chrX_7_3415001 chrX_3415001 EF78_1-HE 3084 chrX 3493066 3493117 chrX 3502251 3502302 roo 11 9185 3.5 0.5 2.0 3.7 9236 chrX 3493066 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502302 intron,intron CR44999 +,Gas8 - chrX_11_3495001 chrX_3495001 EF78_1-HE 3089 chrX 3597524 3597583 chrX 3619717 3619779 roo 15 22193 4.5 3.5 4.0 3.0 22255 chrX 3597524 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619779 intron AstA-R1 + chrX_15_3605001 chrX_3605001 EF78_1-HE 3097 chrX 3726742 3726777 chrX 3730165 3730200 NOF 5 3423 6.0 0.0 3.0 1.2 3458 chrX 3726742 intron tlk + chrX 3728471 intron tlk + chrX 3730200 intron tlk + chrX_5_3725001 chrX_3725001 EF78_1-HE 3100 chrX 3842330 3842349 chrX 3842569 3842588 pogo 6 239 1.0 2.0 1.5 2.4 258 chrX 3842330 intron ec + chrX 3842459 intron ec + chrX 3842588 intron ec + chrX_6_3840001 chrX_3840001 EF78_1-HE 3106 chrX 3986852 3986875 chrX 3994510 3994531 412 4 7658 5.0 0.5 2.8 1.1 7679 chrX 3986852 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994531 intergenic not near genes chrX_4_3990001 chrX_3990001 EF78_1-HE 3111 chrX 4157864 4157910 chrX 4164941 4164987 297 23 7077 5.5 2.5 4.0 4.6 7123 chrX 4157864 intron Fas2 - chrX 4161426 intron Fas2 - chrX 4164987 intron Fas2 - chrX_23_4160001 chrX_4160001 EF78_1-HE 3132 chrX 4700402 4700419 chrX 4700736 4700788 jockey 8 362 4.0 3.0 3.5 1.8 386 chrX 4700402 3` UTR ctp + chrX 4700595 3` UTR ctp + chrX 4700788 3` UTR ctp + chrX_8_4700001 chrX_4700001 EF78_1-HE 3135 chrX 4763235 4763280 chrX 4763749 4763794 Stalker4 9 514 4.0 2.5 3.2 2.1 559 chrX 4763235 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763794 intergenic not near genes chrX_9_4760001 chrX_4760001 EF78_1-HE 3137 chrX 4792354 4792403 chrX 4792813 4792862 jockey 9 458 0.5 5.0 2.8 2.4 508 chrX 4792354 intergenic not near genes chrX 4792608 intergenic not near genes chrX 4792862 intergenic not near genes chrX_9_4790001 chrX_4790001 EF78_1-HE 3138 chrX 4827946 4827995 chrX 4835343 4835392 Stalker4 25 7392 4.0 4.0 4.0 5.0 7446 chrX 4827946 intergenic not near genes chrX 4831669 intergenic not near genes chrX 4835392 intergenic not near genes chrX_25_4830001 chrX_4830001 EF78_1-HE 3141 chrX 4990029 4990077 chrX 4997269 4997317 roo 6 7240 3.5 7.0 5.2 1.0 7288 chrX 4990029 intron CR44833 - chrX 4993673 intron CR44833 - chrX 4997317 intron CR44833 - chrX_6_4990001 chrX_4990001 EF78_1-HE 3143 chrX 5096253 5096301 chrX 5103844 5103892 springer 11 7590 5.5 3.0 4.2 2.1 7639 chrX 5096253 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103892 intron,intron CG15465 +,rg + chrX_11_5100001 chrX_5100001 EF78_1-HE 3150 chrX 5338683 5338716 chrX 5339962 5339995 jockey 10 1279 3.5 3.5 3.5 2.2 1312 chrX 5338683 intergenic not near genes chrX 5339339 intergenic not near genes chrX 5339995 intergenic SK + chrX_10_5335001 chrX_5335001 EF78_1-HE 3166 chrX 5883793 5883840 chrX 5884060 5884108 pogo 5 267 1.5 2.5 2.0 1.7 315 chrX 5883793 intron CR45668 - chrX 5883950 intron CR45668 - chrX 5884108 intron CR45668 - chrX_5_5880001 chrX_5880001 EF78_1-HE 3171 chrX 6171580 6171609 chrX 6179014 6179068 Quasimodo 11 7456 5.5 5.5 5.5 1.7 7488 chrX 6171580 intron Ca-alpha1T - chrX 6175324 intron Ca-alpha1T - chrX 6179068 intron Ca-alpha1T - chrX_11_6175001 chrX_6175001 EF78_1-HE 3176 chrX 6335225 6335239 chrX 6337721 6337775 Tirant 8 2530 1.0 4.5 2.8 2.1 2550 chrX 6335225 intergenic not near genes chrX 6336500 intergenic not near genes chrX 6337775 5` UTR CG3842 + chrX_8_6335001 chrX_6335001 EF78_1-HE 3178 chrX 6392852 6392885 chrX 6397643 6397676 Doc 8 4789 3.5 2.0 2.8 2.1 4824 chrX 6392852 intergenic not near genes chrX 6395264 intergenic not near genes chrX 6397676 intergenic not near genes chrX_8_6395001 chrX_6395001 EF78_1-HE 3184 chrX 6562796 6562844 chrX 6571303 6571352 Tirant 20 8508 5.5 3.5 4.5 3.6 8556 chrX 6562796 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571352 intron CG34417 + chrX_20_6565001 chrX_6565001 EF78_1-HE 3197 chrX 7023604 7023629 chrX 7031008 7031045 Tabor 4 7410 6.0 3.5 4.8 0.7 7441 chrX 7023604 intron CG12541 - chrX 7027324 intron CG12541 - chrX 7031045 intron CG12541 - chrX_4_7025001 chrX_7025001 EF78_1-HE 3213 chrX 7702896 7702923 chrX 7703361 7703385 jockey 15 464 13.5 0.0 6.8 1.9 489 chrX 7702896 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703385 intron CHES-1-like - chrX_15_7700001 chrX_7700001 EF78_1-HE 3222 chrX 8031407 8031442 chrX 8035742 8035777 Juan 5 4335 5.0 5.0 5.0 0.8 4370 chrX 8031407 intergenic not near genes chrX 8033592 intergenic not near genes chrX 8035777 3` UTR CG2233 - chrX_5_8030001 chrX_8030001 EF78_1-HE 3228 chrX 8364824 8364873 chrX 8365247 8365296 BS 12 423 5.0 9.0 7.0 1.5 472 chrX 8364824 intron nAChRalpha3 - chrX 8365060 intron nAChRalpha3 - chrX 8365296 intron nAChRalpha3 - chrX_12_8365001 chrX_8365001 EF78_1-HE 3246 chrX 8922306 8922358 chrX 8922766 8922818 jockey 19 459 5.0 7.0 6.0 2.7 512 chrX 8922306 intron rdgA + chrX 8922562 intron rdgA + chrX 8922818 intron rdgA + chrX_19_8920001 chrX_8920001 EF78_1-HE 3247 chrX 8927564 8927611 chrX 8929860 8929907 NOF 7 2296 2.5 3.0 2.8 1.8 2343 chrX 8927564 intron rdgA + chrX 8928736 intron rdgA + chrX 8929907 intron rdgA + chrX_7_8925001 chrX_8925001 EF78_1-HE 3249 chrX 8948732 8948780 chrX 8956268 8956316 roo 9 7536 3.5 2.0 2.8 2.4 7584 chrX 8948732 intron rdgA + chrX 8952524 intron rdgA + chrX 8956316 intron rdgA + chrX_9_8950001 chrX_8950001 EF78_1-HE 3262 chrX 9508117 9508157 chrX 9509661 9509701 jockey 10 1542 5.5 6.0 5.8 1.5 1584 chrX 9508117 intron CG32700 - chrX 9508909 intron CG32700 - chrX 9509701 intron CG32700 - chrX_10_9505001 chrX_9505001 EF78_1-HE 3263 chrX 9575767 9575814 chrX 9576117 9576164 mdg3 9 350 6.0 2.0 4.0 1.8 397 chrX 9575767 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576164 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 EF78_1-HE 3277 chrX 10138193 10138240 chrX 10145723 10145770 412 12 7530 5.5 3.5 4.5 2.2 7577 chrX 10138193 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145770 intron,intron RhoU +,CR44894 - chrX_12_10140001 chrX_10140001 EF78_1-HE 3281 chrX 10267308 10267325 chrX 10276484 10276501 roo 4 9176 0.0 4.0 2.0 1.3 9193 chrX 10267308 3` UTR alpha-Man-I - chrX 10271904 intron alpha-Man-I - chrX 10276501 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 EF78_1-HE 3296 chrX 10550837 10550854 chrX 10552330 10552347 hobo 4 1493 6.5 3.5 5.0 0.7 1510 chrX 10550837 intron spri - chrX 10551592 intron spri - chrX 10552347 intron spri - chrX_4_10550001 chrX_10550001 EF78_1-HE 3297 chrX 10550855 10550868 chrX 10552328 10552361 hobo 4 1488 7.5 3.5 5.5 0.6 1506 chrX 10550855 intron spri - chrX 10551608 intron spri - chrX 10552361 intron spri - chrX_4_10550001 chrX_10550001 EF78_1-HE 3302 chrX 10686024 10686079 chrX 10691187 10691242 roo 17 5163 5.5 3.5 4.5 3.1 5218 chrX 10686024 intron X11Lbeta + chrX 10688633 intron X11Lbeta + chrX 10691242 intron X11Lbeta + chrX_17_10685001 chrX_10685001 EF78_1-HE 3307 chrX 10772648 10772695 chrX 10772757 10772804 Tirant 14 109 3.0 1.5 2.2 4.4 156 chrX 10772648 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772804 intron CG15211 + chrX_14_10770001 chrX_10770001 EF78_1-HE 3320 chrX 11268538 11268594 chrX 11270055 11270095 hopper2 11 1515 4.5 0.0 2.2 3.4 1557 chrX 11268538 intron CG44422 - chrX 11269316 intron CG44422 - chrX 11270095 intron CG44422 - chrX_11_11265001 chrX_11265001 EF78_1-HE 3322 chrX 11312041 11312080 chrX 11319420 11319459 Stalker2 5 7378 2.0 2.5 2.2 1.6 7418 chrX 11312041 intergenic not near genes chrX 11315750 intergenic not near genes chrX 11319459 intergenic not near genes chrX_5_11315001 chrX_11315001 EF78_1-HE 3327 chrX 11535021 11535046 chrX 11541517 11541542 Burdock 6 6496 7.0 2.5 4.8 1.0 6521 chrX 11535021 intron Drak + chrX 11538282 intron Drak + chrX 11541542 intron Drak + chrX_6_11535001 chrX_11535001 EF78_1-HE 3328 chrX 11571426 11571483 chrX 11571693 11571750 pogo 7 267 4.5 1.0 2.8 1.8 324 chrX 11571426 3` UTR Kmn1 - chrX 11571588 3` UTR Kmn1 - chrX 11571750 3` UTR Kmn1 - chrX_7_11570001 chrX_11570001 EF78_1-HE 3329 chrX 11633410 11633444 chrX 11640494 11640528 297 13 7084 2.5 7.0 4.8 2.2 7118 chrX 11633410 intron Ptp10D + chrX 11636969 intron Ptp10D + chrX 11640528 intron Ptp10D + chrX_13_11635001 chrX_11635001 EF78_1-HE 3330 chrX 11645114 11645128 chrX 11648307 11648321 NOF 5 3193 5.5 0.0 2.8 1.3 3207 chrX 11645114 intron Ptp10D + chrX 11646718 intron Ptp10D + chrX 11648321 intron Ptp10D + chrX_5_11645001 chrX_11645001 EF78_1-HE 3341 chrX 12168109 12168153 chrX 12173577 12173620 I-element 14 5468 1.0 4.0 2.5 4.0 5511 chrX 12168109 intron Ten-a + chrX 12170864 intron Ten-a + chrX 12173620 intron Ten-a + chrX_14_12170001 chrX_12170001 EF78_1-HE 3386 chrX 13403002 13403040 chrX 13403155 13403193 X-element 6 152 0.5 1.5 1.0 3.0 191 chrX 13403002 intergenic CG12725 - chrX 13403098 intergenic CG12725 - chrX 13403193 intergenic CG12725 - chrX_6_13400001 chrX_13400001 EF78_1-HE 3387 chrX 13429441 13429480 chrX 13430616 13430655 jockey 7 1174 4.5 6.0 5.2 1.1 1214 chrX 13429441 intergenic not near genes chrX 13430048 intergenic not near genes chrX 13430655 intergenic not near genes chrX_7_13430001 chrX_13430001 EF78_1-HE 3389 chrX 13463619 13463672 chrX 13469222 13469270 mdg3 9 5602 0.5 1.0 0.8 5.0 5651 chrX 13463619 intron Neto + chrX 13466444 intron Neto + chrX 13469270 intron Neto + chrX_9_13465001 chrX_13465001 EF78_1-HE 3405 chrX 13937958 13937975 chrX 13941255 13941272 I-element 7 3297 1.5 2.0 1.8 2.5 3314 chrX 13937958 intron mamo - chrX 13939615 intron mamo - chrX 13941272 intron mamo - chrX_7_13935001 chrX_13935001 EF78_1-HE 3411 chrX 14105005 14105043 chrX 14114182 14114220 roo 12 9176 2.5 3.0 2.8 3.2 9215 chrX 14105005 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114220 5` UTR CR44657 + chrX_12_14105001 chrX_14105001 EF78_1-HE 3423 chrX 14416285 14416334 chrX 14421079 14421127 F-element 9 4794 5.0 6.0 5.5 1.4 4842 chrX 14416285 intron dpr8 + chrX 14418706 intron dpr8 + chrX 14421127 intron dpr8 + chrX_9_14415001 chrX_14415001 EF78_1-HE 3432 chrX 14636440 14636486 chrX 14641906 14641953 I-element 10 5466 7.0 3.5 5.2 1.6 5513 chrX 14636440 intron NetA - chrX 14639196 intron NetA - chrX 14641953 intron NetA - chrX_10_14635001 chrX_14635001 EF78_1-HE 3439 chrX 14778013 14778052 chrX 14782836 14782875 Doc 7 4823 5.0 9.5 7.2 0.9 4862 chrX 14778013 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782875 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 EF78_1-HE 3443 chrX 14818758 14818796 chrX 14823966 14824026 copia 8 5227 3.5 0.5 2.0 2.7 5268 chrX 14818758 intron rut - chrX 14821392 intron rut - chrX 14824026 intron rut - chrX_8_14820001 chrX_14820001 EF78_1-HE 3448 chrX 14936873 14936888 chrX 14946156 14946171 roo 7 9283 0.0 4.0 2.0 2.3 9298 chrX 14936873 intron pdgy - chrX 14941522 intron pdgy - chrX 14946171 intron pdgy - chrX_7_14940001 chrX_14940001 EF78_1-HE 3463 chrX 15273683 15273691 chrX 15274876 15274884 1360 5 1193 12.5 7.0 9.8 0.5 1201 chrX 15273683 intergenic not near genes chrX 15274284 intergenic not near genes chrX 15274884 intergenic not near genes chrX_5_15270001 chrX_15270001 EF78_1-HE 3464 chrX 15273700 15273733 chrX 15274871 15274926 1360 7 1190 5.0 6.0 5.5 1.1 1226 chrX 15273700 intergenic not near genes chrX 15274313 intergenic not near genes chrX 15274926 intergenic not near genes chrX_7_15270001 chrX_15270001 EF78_1-HE 3468 chrX 15413034 15413079 chrX 15417362 15417406 Juan 22 4327 8.5 10.0 9.2 2.2 4372 chrX 15413034 intron Cngl - chrX 15415220 intron Cngl - chrX 15417406 intron Cngl - chrX_22_15415001 chrX_15415001 EF78_1-HE 3469 chrX 15421899 15421947 chrX 15423436 15423484 pogo 9 1537 2.5 4.5 3.5 2.0 1585 chrX 15421899 intron Cngl - chrX 15422692 intron Cngl - chrX 15423484 intron Cngl - chrX_9_15420001 chrX_15420001 EF78_1-HE 3471 chrX 15435689 15435697 chrX 15436148 15436156 rover 5 459 16.0 14.0 15.0 0.3 467 chrX 15435689 intron Cngl - chrX 15435922 intron Cngl - chrX 15436156 intron Cngl - chrX_5_15435001 chrX_15435001 EF78_1-HE 3472 chrX 15435699 15435703 chrX 15436126 15436162 rover 5 453 13.5 10.5 12.0 0.4 463 chrX 15435699 intron Cngl - chrX 15435930 intron Cngl - chrX 15436162 intron Cngl - chrX_5_15435001 chrX_15435001 EF78_1-HE 3492 chrX 16222754 16222806 chrX 16231130 16231182 roo 10 8376 2.5 3.0 2.8 2.6 8428 chrX 16222754 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231182 intergenic not near genes chrX_10_16225001 chrX_16225001 EF78_1-HE 3496 chrX 16492618 16492674 chrX 16498221 16498277 mdg3 22 5602 4.0 6.0 5.0 3.7 5659 chrX 16492618 intron para - chrX 16495448 intron para - chrX 16498277 exon para - chrX_22_16495001 chrX_16495001 EF78_1-HE 3511 chrX 16936014 16936023 chrX 16936458 16936467 jockey 4 444 2.0 3.5 2.8 1.1 453 chrX 16936014 intron CG4928 + chrX 16936240 intron CG4928 + chrX 16936467 intron CG4928 + chrX_4_16935001 chrX_16935001 EF78_1-HE 3522 chrX 17195185 17195229 chrX 17200296 17200340 flea 7 5110 4.5 2.5 3.5 1.6 5155 chrX 17195185 3` UTR baz + chrX 17197762 3` UTR baz + chrX 17200340 3` UTR baz + chrX_7_17195001 chrX_17195001 EF78_1-HE 3544 chrX 17792931 17792938 chrX 17796255 17796262 flea 4 3324 9.0 4.5 6.8 0.5 3331 chrX 17792931 intron OdsH + chrX 17794596 intron OdsH + chrX 17796262 intron OdsH + chrX_4_17790001 chrX_17790001 EF78_1-HE 3545 chrX 17792942 17792976 chrX 17796251 17796300 flea 10 3322 5.0 4.0 4.5 1.8 3358 chrX 17792942 intron OdsH + chrX 17794621 intron OdsH + chrX 17796300 intron OdsH + chrX_10_17790001 chrX_17790001 EF78_1-HE 3562 chrX 18429481 18429515 chrX 18434818 18434852 Transpac 7 5337 4.0 7.5 5.8 1.0 5371 chrX 18429481 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434852 intergenic not near genes chrX_7_18430001 chrX_18430001 EF78_1-HE 3575 chrX 18754309 18754343 chrX 18758002 18758036 297 4 3693 4.5 4.0 4.2 0.8 3727 chrX 18754309 intergenic not near genes chrX 18756172 intergenic not near genes chrX 18758036 intergenic not near genes chrX_4_18755001 chrX_18755001 EF78_1-HE 3581 chrX 18957060 18957092 chrX 18965749 18965781 roo 6 8689 1.5 1.5 1.5 2.4 8721 chrX 18957060 intron CG43759 + chrX 18961420 intron CG43759 + chrX 18965781 intron CG43759 + chrX_6_18960001 chrX_18960001 EF78_1-HE 3586 chrX 19060387 19060434 chrX 19065197 19065244 Doc 10 4809 5.5 5.5 5.5 1.5 4857 chrX 19060387 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065244 intron CG14190 + chrX_10_19060001 chrX_19060001 EF78_1-HE 3589 chrX 19136524 19136583 chrX 19143472 19143527 412 14 6946 2.5 3.0 2.8 3.7 7003 chrX 19136524 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143527 3` UTR RhoGAP18B - chrX_14_19140001 chrX_19140001 EF78_1-HE 3594 chrX 19356963 19357012 chrX 19358430 19358479 NOF 9 1467 11.0 8.0 9.5 0.9 1516 chrX 19356963 intron kek5 + chrX 19357721 intron kek5 + chrX 19358479 intron kek5 + chrX_9_19355001 chrX_19355001 EF78_1-HE 3595 chrX 19380142 19380187 chrX 19380410 19380448 pogo 17 267 5.5 9.0 7.2 2.1 306 chrX 19380142 intron kek5 + chrX 19380295 intron kek5 + chrX 19380448 intron kek5 + chrX_17_19380001 chrX_19380001 EF78_1-HE 3609 chrX 19710047 19710096 chrX 19711859 19711908 S-element 15 1812 6.0 3.0 4.5 2.7 1861 chrX 19710047 intron meso18E - chrX 19710978 intron meso18E - chrX 19711908 intron meso18E - chrX_15_19710001 chrX_19710001 EF78_1-HE 3615 chrX 19797328 19797337 chrX 19804667 19804676 Stalker4 8 7339 6.5 6.5 6.5 1.1 7348 chrX 19797328 intergenic not near genes chrX 19801002 intergenic not near genes chrX 19804676 intergenic not near genes chrX_8_19800001 chrX_19800001 EF78_1-HE 3634 chrX 20144463 20144469 chrX 21085284 21085290 INE-1 6 940821 3.0 30.0 16.5 0.3 940827 chrX 20144463 intergenic not near genes chrX 20614876 intron RunxA - chrX 21085290 intergenic not near genes chrX_6_20610001 chrX_20610001 EF78_1-HE 3653 chrX 20504101 20504156 chrX 20505648 20505703 transib2 10 1547 4.0 3.5 3.8 2.1 1602 chrX 20504101 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505703 intron RhoGAP19D - chrX_10_20500001 chrX_20500001 EF78_1-HE 3674 chrX 20940701 20940736 chrX 20942196 20942231 hobo 16 1495 4.0 0.5 2.2 5.0 1530 chrX 20940701 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942231 intergenic not near genes chrX_16_20940001 chrX_20940001 EF78_1-HE 3679 chrX 21061867 21061897 chrX 21062370 21062400 roo 7 508 4.0 5.5 4.8 1.2 533 chrX 21061867 intron bves + chrX 21062134 intron bves + chrX 21062400 intron,3` UTR bves +,CG32512 - chrX_7_21060001 chrX_21060001 EF78_1-HE 3686 chrX 21086102 21086163 chrX 21087157 21087182 jockey 16 1052 4.5 5.5 5.0 2.7 1080 chrX 21086102 intergenic not near genes chrX 21086642 intergenic not near genes chrX 21087182 intergenic not near genes chrX_16_21085001 chrX_21085001 EF78_1-HE 3691 chrX 21254683 21254732 chrX 21255295 21255344 hopper2 17 612 3.0 7.0 5.0 2.8 661 chrX 21254683 intron CG32521 - chrX 21255014 intron CG32521 - chrX 21255344 intron CG32521 - chrX_17_21255001 chrX_21255001 EF78_1-HE 3698 chrX 21458700 21458720 chrX 21464162 21464180 Ivk 5 5462 1.5 2.0 1.8 1.8 5480 chrX 21458700 intergenic not near genes chrX 21461440 intergenic not near genes chrX 21464180 intergenic not near genes chrX_5_21460001 chrX_21460001 EF78_1-HE 3701 chrX 21474389 21474430 chrX 21474781 21474810 1731 7 390 0.5 2.0 1.2 3.2 421 chrX 21474389 intergenic not near genes chrX 21474600 intergenic not near genes chrX 21474810 intergenic not near genes chrX_7_21470001 chrX_21470001 EF78_1-HE 3709 chrX 22522603 22522636 chrX 22525449 22525482 NOF 7 2846 4.0 2.5 3.2 1.7 2879 chrX 22522603 intron CG17600 + chrX 22524042 intron CG17600 + chrX 22525482 intron CG17600 + chrX_7_22520001 chrX_22520001 EF78_1-HE 3713 chrX 22681458 22681508 chrX 22688942 22688992 HMS-Beagle2 26 7484 9.0 6.5 7.8 3.0 7534 chrX 22681458 intron CR44997 + chrX 22685225 intron CR44997 + chrX 22688992 intron CR44997 + chrX_26_22685001 chrX_22685001 EF78_1-HE 3716 chrX 22697476 22697517 chrX 22701799 22701839 Juan 14 4323 8.5 10.0 9.2 1.4 4363 chrX 22697476 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701839 intron CR44997 + chrX_14_22695001 chrX_22695001 EF78_1-HE 3719 chrX 22771509 22771534 chrX 22774795 22774851 297 8 3311 2.5 3.5 3.0 2.0 3342 chrX 22771509 intron CR44997 + chrX 22773180 intron CR44997 + chrX 22774851 intron CR44997 + chrX_8_22770001 chrX_22770001 EF78_1-HE 3721 chrX 22811983 22812002 chrX 22816768 22816800 F-element 5 4794 3.5 3.5 3.5 1.1 4817 chrX 22811983 intergenic CG12446 - chrX 22814392 intergenic not near genes chrX 22816800 intergenic not near genes chrX_5_22810001 chrX_22810001 EF78_1-HE 3727 chrX 22987115 22987122 chrX 22989798 22989807 Burdock 4 2684 0.5 3.0 1.8 1.4 2692 chrX 22987115 intron,intron stnA -,stnB - chrX 22988461 intron,intron stnA -,stnB - chrX 22989807 intron,intron stnA -,stnB - chrX_4_22985001 chrX_22985001 EF78_1-HE 3728 chrX 22996294 22996336 chrX 23003552 23003594 roo 6 7257 1.0 3.0 2.0 2.0 7300 chrX 22996294 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003594 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 EF78_1-HE