SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47446	47478	chr2L	52577	52609	jockey	10	5131	8.5	6.0	7.2	1.2	5163	chr2L	47446	intron	Cda5 -	chr2L	50028	intron	Cda5 -	chr2L	52609	intron	Cda5 -	chr2L_10_50001	chr2L_50001	EF65_1-HE
9	chr2L	770453	770489	chr2L	772246	772296	Bari1	5	1804	3.0	2.0	2.5	1.4	1843	chr2L	770453	intergenic	not near genes	chr2L	771374	intergenic	not near genes	chr2L	772296	intergenic	CR44614 +	chr2L_5_770001	chr2L_770001	EF65_1-HE
19	chr2L	976860	976897	chr2L	984522	984559	roo	7	7662	4.5	4.5	4.5	1.3	7699	chr2L	976860	intergenic	not near genes	chr2L	980710	intergenic	not near genes	chr2L	984559	intergenic	not near genes	chr2L_7_980001	chr2L_980001	EF65_1-HE
22	chr2L	1220112	1220162	chr2L	1227604	1227654	blood	6	7492	1.5	2.5	2.0	2.0	7542	chr2L	1220112	intron	CG42329 +	chr2L	1223883	intron	CG42329 +	chr2L	1227654	intron	CG42329 +	chr2L_6_1220001	chr2L_1220001	EF65_1-HE
29	chr2L	1570663	1570714	chr2L	1573561	1573612	F-element	12	2896	1.0	6.0	3.5	2.7	2949	chr2L	1570663	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573612	intron	haf +	chr2L_12_1570001	chr2L_1570001	EF65_1-HE
32	chr2L	1711354	1711381	chr2L	1711704	1711731	mdg3	9	350	2.5	5.0	3.8	1.9	377	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711542	3` UTR	frtz -	chr2L	1711731	3` UTR	frtz -	chr2L_9_1710001	chr2L_1710001	EF65_1-HE
41	chr2L	2112093	2112134	chr2L	2119781	2119822	opus	7	7688	4.5	4.0	4.2	1.3	7729	chr2L	2112093	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119822	intergenic	not near genes	chr2L_7_2115001	chr2L_2115001	EF65_1-HE
46	chr2L	2294017	2294071	chr2L	2299248	2299302	copia	10	5229	3.5	3.5	3.5	2.2	5285	chr2L	2294017	intergenic	not near genes	chr2L	2296660	intergenic	not near genes	chr2L	2299302	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	EF65_1-HE
59	chr2L	2661181	2661225	chr2L	2663045	2663089	I-element	4	1864	1.5	2.0	1.8	1.4	1908	chr2L	2661181	intergenic	not near genes	chr2L	2662135	intergenic	not near genes	chr2L	2663089	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	EF65_1-HE
67	chr2L	2933269	2933315	chr2L	2935482	2935528	pogo	24	2213	9.5	9.0	9.2	2.4	2259	chr2L	2933269	intron	lilli +	chr2L	2934398	intron	lilli +	chr2L	2935528	intron	lilli +	chr2L_24_2930001	chr2L_2930001	EF65_1-HE
69	chr2L	3073009	3073051	chr2L	3078238	3078280	copia	4	5229	2.0	1.5	1.8	1.4	5271	chr2L	3073009	intron	toc -	chr2L	3075644	intron	toc -	chr2L	3078280	intron	toc -	chr2L_4_3075001	chr2L_3075001	EF65_1-HE
91	chr2L	4601694	4601733	chr2L	4609161	4609200	mdg1	5	7467	2.0	2.5	2.2	1.6	7506	chr2L	4601694	intron	dp -	chr2L	4605447	intron	dp -	chr2L	4609200	intron	dp -	chr2L_5_4605001	chr2L_4605001	EF65_1-HE
98	chr2L	4953497	4953512	chr2L	4953764	4953779	pogo	4	267	2.5	0.5	1.5	1.6	282	chr2L	4953497	intergenic	Jon25Bii -	chr2L	4953638	intergenic	not near genes	chr2L	4953779	intergenic	Jon25Bi -	chr2L_4_4950001	chr2L_4950001	EF65_1-HE
129	chr2L	6426839	6426874	chr2L	6445125	6445160	roo	5	18286	0.5	0.5	0.5	3.3	18321	chr2L	6426839	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445160	exon	CG9527 -	chr2L_5_6435001	chr2L_6435001	EF65_1-HE
142	chr2L	6876767	6876802	chr2L	6882980	6883015	diver	8	6214	3.5	3.5	3.5	1.8	6248	chr2L	6876767	intron	Nlg2 +	chr2L	6879891	intron	Nlg2 +	chr2L	6883015	intron	Nlg2 +	chr2L_8_6875001	chr2L_6875001	EF65_1-HE
149	chr2L	7343304	7343348	chr2L	7350446	7350489	roo	9	7140	5.5	6.0	5.8	1.3	7185	chr2L	7343304	intron	Wnt6 +	chr2L	7346896	intron	Wnt6 +	chr2L	7350489	intron	Wnt6 +	chr2L_9_7345001	chr2L_7345001	EF65_1-HE
166	chr2L	8452403	8452446	chr2L	8461600	8461643	roo	7	9196	3.5	2.5	3.0	1.8	9240	chr2L	8452403	intron	fu12 -	chr2L	8457023	intron	fu12 -	chr2L	8461643	intron	fu12 -	chr2L_7_8455001	chr2L_8455001	EF65_1-HE
171	chr2L	8723094	8723130	chr2L	8731497	8731533	Tirant	8	8403	1.5	2.5	2.0	2.7	8439	chr2L	8723094	intron	raw -	chr2L	8727314	intron	raw -	chr2L	8731533	intron	raw -	chr2L_8_8725001	chr2L_8725001	EF65_1-HE
175	chr2L	9000260	9000294	chr2L	9007796	9007830	roo	6	7536	4.0	0.0	2.0	2.0	7570	chr2L	9000260	intergenic	Try29F +	chr2L	9004045	intergenic	not near genes	chr2L	9007830	intergenic	not near genes	chr2L_6_9000001	chr2L_9000001	EF65_1-HE
190	chr2L	9770742	9770772	chr2L	9770871	9770901	1360	6	129	3.0	2.5	2.8	1.6	159	chr2L	9770742	intron	ppk18 -	chr2L	9770822	intron	ppk18 -	chr2L	9770901	exon	ppk18 -	chr2L_6_9770001	chr2L_9770001	EF65_1-HE
195	chr2L	9973711	9973757	chr2L	9980856	9980902	HMS-Beagle	9	7145	1.5	5.0	3.2	2.1	7191	chr2L	9973711	intergenic	not near genes	chr2L	9977306	intergenic	not near genes	chr2L	9980902	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	EF65_1-HE
204	chr2L	10138172	10138189	chr2L	10143442	10143459	Rt1c	4	5270	0.5	5.0	2.8	1.1	5287	chr2L	10138172	intron	CG44153 -	chr2L	10140816	intron	CG44153 -	chr2L	10143459	intron	CG44153 -	chr2L_4_10140001	chr2L_10140001	EF65_1-HE
205	chr2L	10156304	10156354	chr2L	10163795	10163849	blood	5	7494	1.0	3.0	2.0	1.7	7545	chr2L	10156304	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160076	intron	CG44153 -	chr2L	10163849	intron	CG44153 -	chr2L_5_10160001	chr2L_10160001	EF65_1-HE
212	chr2L	10592818	10592857	chr2L	10600506	10600545	opus	4	7688	1.0	0.0	0.5	2.7	7727	chr2L	10592818	intron	Trim9 +	chr2L	10596682	intron	Trim9 +	chr2L	10600545	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	EF65_1-HE
219	chr2L	10862838	10862859	chr2L	10864478	10864499	Rt1c	5	1640	6.0	2.5	4.2	1.0	1661	chr2L	10862838	3` UTR	CR43807 -	chr2L	10863668	intron	CR43807 -	chr2L	10864499	3` UTR	CR43807 -	chr2L_5_10860001	chr2L_10860001	EF65_1-HE
222	chr2L	10946929	10946973	chr2L	10956170	10956214	roo	18	9240	6.5	7.0	6.8	2.3	9285	chr2L	10946929	intron	dpr2 -	chr2L	10951572	intron	dpr2 -	chr2L	10956214	intron	dpr2 -	chr2L_18_10950001	chr2L_10950001	EF65_1-HE
237	chr2L	11563620	11563669	chr2L	11568842	11568899	copia	5	5228	1.0	1.0	1.0	2.5	5279	chr2L	11563620	intergenic	not near genes	chr2L	11566260	intergenic	not near genes	chr2L	11568899	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	EF65_1-HE
238	chr2L	11713492	11713536	chr2L	11720986	11720990	blood	6	7487	2.0	1.5	1.8	2.1	7498	chr2L	11713492	intergenic	not near genes	chr2L	11717241	intergenic	not near genes	chr2L	11720990	intergenic	CR44143 +	chr2L_6_11715001	chr2L_11715001	EF65_1-HE
257	chr2L	12558293	12558352	chr2L	12565448	12565507	HMS-Beagle	5	7155	1.5	0.5	1.0	2.5	7214	chr2L	12558293	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565507	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	EF65_1-HE
261	chr2L	12791580	12791615	chr2L	12795281	12795316	F-element	5	3699	4.5	1.0	2.8	1.3	3736	chr2L	12791580	intergenic	not near genes	chr2L	12793448	intergenic	not near genes	chr2L	12795316	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	EF65_1-HE
262	chr2L	12861674	12861716	chr2L	12863167	12863209	hobo	5	1493	3.5	1.0	2.2	1.6	1535	chr2L	12861674	intergenic	not near genes	chr2L	12862442	intergenic	not near genes	chr2L	12863209	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	EF65_1-HE
263	chr2L	12894006	12894048	chr2L	12895497	12895541	hobo	15	1492	5.0	5.0	5.0	2.5	1535	chr2L	12894006	intergenic	not near genes	chr2L	12894774	intergenic	not near genes	chr2L	12895541	intergenic	not near genes	chr2L_15_12890001	chr2L_12890001	EF65_1-HE
265	chr2L	12933849	12933877	chr2L	12941339	12941370	blood	7	7493	2.0	4.5	3.2	1.7	7521	chr2L	12933849	intergenic	not near genes	chr2L	12937610	intergenic	not near genes	chr2L	12941370	intergenic	not near genes	chr2L_7_12935001	chr2L_12935001	EF65_1-HE
268	chr2L	13481434	13481468	chr2L	13482067	13482101	jockey	11	633	8.0	14.0	11.0	0.9	667	chr2L	13481434	intron	CG42784 +	chr2L	13481768	intron	CG42784 +	chr2L	13482101	intron	CG42784 +	chr2L_11_13480001	chr2L_13480001	EF65_1-HE
272	chr2L	13761788	13761820	chr2L	13762925	13762947	Doc	4	1134	1.5	0.0	0.8	2.2	1159	chr2L	13761788	intron	TM9SF4 +	chr2L	13762368	intron	TM9SF4 +	chr2L	13762947	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	EF65_1-HE
273	chr2L	13853064	13853109	chr2L	13862240	13862285	roo	8	9176	3.0	1.0	2.0	2.7	9221	chr2L	13853064	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862285	intron	CenG1A +	chr2L_8_13855001	chr2L_13855001	EF65_1-HE
283	chr2L	14803855	14803904	chr2L	14809084	14809133	copia	14	5229	3.5	2.0	2.8	3.7	5278	chr2L	14803855	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809133	intergenic	not near genes	chr2L_14_14805001	chr2L_14805001	EF65_1-HE
285	chr2L	14889926	14889956	chr2L	14890377	14890407	jockey	8	450	4.5	0.5	2.5	2.3	481	chr2L	14889926	intergenic	not near genes	chr2L	14890166	intergenic	not near genes	chr2L	14890407	intergenic	not near genes	chr2L_8_14890001	chr2L_14890001	EF65_1-HE
297	chr2L	15446030	15446058	chr2L	15453524	15453553	blood	6	7495	2.5	1.0	1.8	2.1	7523	chr2L	15446030	intergenic	not near genes	chr2L	15449792	intergenic	not near genes	chr2L	15453553	intergenic	not near genes	chr2L_6_15445001	chr2L_15445001	EF65_1-HE
305	chr2L	15956003	15956045	chr2L	15957496	15957538	hobo	11	1493	6.0	4.0	5.0	1.8	1535	chr2L	15956003	intron	beat-Ib -	chr2L	15956770	intron	beat-Ib -	chr2L	15957538	intron	beat-Ib -	chr2L_11_15955001	chr2L_15955001	EF65_1-HE
307	chr2L	16141143	16141196	chr2L	16146376	16146429	copia	8	5232	1.0	3.0	2.0	2.7	5286	chr2L	16141143	intergenic	not near genes	chr2L	16143786	intergenic	not near genes	chr2L	16146429	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	EF65_1-HE
308	chr2L	16153714	16153753	chr2L	16160794	16160833	297	15	7080	5.0	2.5	3.8	3.1	7119	chr2L	16153714	intergenic	not near genes	chr2L	16157274	intergenic	not near genes	chr2L	16160833	intergenic	not near genes	chr2L_15_16155001	chr2L_16155001	EF65_1-HE
310	chr2L	16280244	16280279	chr2L	16281438	16281473	1360	9	1191	3.0	6.0	4.5	1.6	1229	chr2L	16280244	intron	crp -	chr2L	16280858	intron	crp -	chr2L	16281473	intron	crp -	chr2L_9_16280001	chr2L_16280001	EF65_1-HE
318	chr2L	16958084	16958095	chr2L	16962896	16962909	Doc	4	4814	2.5	2.5	2.5	1.1	4825	chr2L	16958084	intergenic	not near genes	chr2L	16960496	intergenic	not near genes	chr2L	16962909	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	EF65_1-HE
319	chr2L	16958099	16958132	chr2L	16962895	16962946	Doc	12	4812	2.0	2.5	2.2	3.8	4847	chr2L	16958099	intergenic	not near genes	chr2L	16960522	intergenic	not near genes	chr2L	16962946	intergenic	not near genes	chr2L_12_16960001	chr2L_16960001	EF65_1-HE
330	chr2L	17167539	17167593	chr2L	17167805	17167860	pogo	4	267	2.0	1.5	1.8	1.4	321	chr2L	17167539	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167860	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	EF65_1-HE
332	chr2L	17273179	17273221	chr2L	17277988	17278030	F-element	11	4809	0.0	4.0	2.0	3.7	4851	chr2L	17273179	intergenic	not near genes	chr2L	17275604	intergenic	not near genes	chr2L	17278030	intergenic	not near genes	chr2L_11_17275001	chr2L_17275001	EF65_1-HE
342	chr2L	17687498	17687521	chr2L	17692269	17692292	F-element	9	4771	3.5	4.5	4.0	1.8	4794	chr2L	17687498	intron	CadN -	chr2L	17689895	intron	CadN -	chr2L	17692292	intron	CadN -	chr2L_9_17685001	chr2L_17685001	EF65_1-HE
345	chr2L	17727852	17727879	chr2L	17729345	17729372	hobo	5	1493	4.5	9.5	7.0	0.6	1520	chr2L	17727852	intron	CadN -	chr2L	17728612	intron	CadN -	chr2L	17729372	intron	CadN -	chr2L_5_17725001	chr2L_17725001	EF65_1-HE
347	chr2L	17819912	17819943	chr2L	17825138	17825173	copia	8	5229	1.5	3.0	2.2	2.5	5261	chr2L	17819912	intron	CadN2 -	chr2L	17822542	intron	CadN2 -	chr2L	17825173	intron	CadN2 -	chr2L_8_17820001	chr2L_17820001	EF65_1-HE
351	chr2L	17911948	17911985	chr2L	17914152	17914189	pogo	4	2204	1.5	1.5	1.5	1.6	2241	chr2L	17911948	intergenic	not near genes	chr2L	17913068	intergenic	not near genes	chr2L	17914189	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	EF65_1-HE
352	chr2L	17951922	17951973	chr2L	17953415	17953466	hobo	7	1493	1.0	2.5	1.8	2.5	1544	chr2L	17951922	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953466	intergenic	not near genes	chr2L_7_17950001	chr2L_17950001	EF65_1-HE
354	chr2L	18051857	18051903	chr2L	18061027	18061075	roo	6	9172	2.0	0.5	1.2	2.7	9218	chr2L	18051857	intron	rdo +	chr2L	18056466	intron	rdo +	chr2L	18061075	intron	rdo +	chr2L_6_18055001	chr2L_18055001	EF65_1-HE
366	chr2L	19147347	19147389	chr2L	19154408	19154450	297	7	7061	4.5	1.0	2.8	1.8	7103	chr2L	19147347	intron	brat +	chr2L	19150898	intron	brat +	chr2L	19154450	intron	brat +	chr2L_7_19150001	chr2L_19150001	EF65_1-HE
372	chr2L	19344997	19345038	chr2L	19357232	19357273	blood	8	12235	3.5	3.0	3.2	1.9	12276	chr2L	19344997	intron	dnt -	chr2L	19351135	intron	dnt -	chr2L	19357273	intron	dnt -	chr2L_8_19350001	chr2L_19350001	EF65_1-HE
379	chr2L	19620071	19620127	chr2L	19621086	19621142	jockey	27	1015	8.0	5.0	6.5	3.6	1071	chr2L	19620071	intron	Lar +	chr2L	19620606	intron	Lar +	chr2L	19621142	intron	Lar +	chr2L_27_19620001	chr2L_19620001	EF65_1-HE
380	chr2L	19703515	19703532	chr2L	19712677	19712694	roo	7	9162	16.5	8.5	12.5	0.5	9179	chr2L	19703515	intron	Lar +	chr2L	19708104	intron	Lar +	chr2L	19712694	intron	Lar +	chr2L_7_19705001	chr2L_19705001	EF65_1-HE
381	chr2L	19703533	19703558	chr2L	19712675	19712720	roo	10	9160	12.0	8.5	10.2	0.9	9187	chr2L	19703533	intron	Lar +	chr2L	19708126	intron	Lar +	chr2L	19712720	intron	Lar +	chr2L_10_19705001	chr2L_19705001	EF65_1-HE
382	chr2L	19737332	19737384	chr2L	19740827	19740845	1360	5	3488	2.5	3.5	3.0	1.2	3513	chr2L	19737332	intergenic	Nf-YB +	chr2L	19739088	intergenic	not near genes	chr2L	19740845	intergenic	not near genes	chr2L_5_19735001	chr2L_19735001	EF65_1-HE
383	chr2L	19762785	19762834	chr2L	19763053	19763102	pogo	5	268	2.5	0.5	1.5	2.0	317	chr2L	19762785	exon	fbp -	chr2L	19762944	intron	fbp -	chr2L	19763102	intron	fbp -	chr2L_5_19760001	chr2L_19760001	EF65_1-HE
391	chr2L	20005856	20005896	chr2L	20010956	20010998	flea	5	5097	2.5	2.0	2.2	1.6	5142	chr2L	20005856	intron	CG43861 -	chr2L	20008427	intron	CG43861 -	chr2L	20010998	intron	CG43861 -	chr2L_5_20005001	chr2L_20005001	EF65_1-HE
393	chr2L	20117989	20118006	chr2L	20119580	20119598	1360	5	1592	0.0	2.0	1.0	2.5	1609	chr2L	20117989	intergenic	not near genes	chr2L	20118794	intergenic	not near genes	chr2L	20119598	intergenic	not near genes	chr2L_5_20115001	chr2L_20115001	EF65_1-HE
395	chr2L	20272090	20272139	chr2L	20282827	20282876	copia	17	10737	1.5	3.0	2.2	5.3	10786	chr2L	20272090	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282876	intergenic	not near genes	chr2L_17_20275001	chr2L_20275001	EF65_1-HE
401	chr2L	20568639	20568682	chr2L	20569055	20569098	X-element	5	416	2.0	3.5	2.8	1.3	459	chr2L	20568639	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569098	intron	CR45347 +	chr2L_5_20565001	chr2L_20565001	EF65_1-HE
402	chr2L	20576194	20576245	chr2L	20583688	20583739	blood	6	7494	4.5	2.5	3.5	1.3	7545	chr2L	20576194	intergenic	CR45347 +	chr2L	20579966	intergenic	not near genes	chr2L	20583739	3` UTR	CR44909 -	chr2L_6_20575001	chr2L_20575001	EF65_1-HE
412	chr2L	21020259	21020282	chr2L	21023962	21023985	NOF	6	3703	5.0	5.5	5.2	1.0	3726	chr2L	21020259	intron	CG42238 -	chr2L	21022122	intron	CG42238 -	chr2L	21023985	intron	CG42238 -	chr2L_6_21020001	chr2L_21020001	EF65_1-HE
414	chr2L	21041116	21041160	chr2L	21049403	21049447	Tirant	9	8287	1.5	2.0	1.8	3.2	8331	chr2L	21041116	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049447	intron	CG42238 -	chr2L_9_21045001	chr2L_21045001	EF65_1-HE
420	chr2L	21981661	21981707	chr2L	21990852	21990897	roo	7	9191	2.0	5.5	3.8	1.5	9236	chr2L	21981661	exon	CG2528 -	chr2L	21986279	intron	CG2528 -	chr2L	21990897	exon	CG2528 -	chr2L_7_21985001	chr2L_21985001	EF65_1-HE
428	chr2R	4838857	4838901	chr2R	4840406	4840450	transib2	7	1549	3.5	6.5	5.0	1.2	1593	chr2R	4838857	intergenic	not near genes	chr2R	4839654	intergenic	not near genes	chr2R	4840450	intergenic	not near genes	chr2R_7_4835001	chr2R_4835001	EF65_1-HE
429	chr2R	4870717	4870737	chr2R	4871254	4871274	R1A1-element	9	537	4.0	3.5	3.8	1.9	557	chr2R	4870717	intergenic	not near genes	chr2R	4870996	intergenic	not near genes	chr2R	4871274	intergenic	not near genes	chr2R_9_4870001	chr2R_4870001	EF65_1-HE
436	chr2R	5417971	5418015	chr2R	5420629	5420635	Burdock	4	2648	1.0	1.5	1.2	1.8	2664	chr2R	5417971	intron	laccase2 +	chr2R	5419303	intron	laccase2 +	chr2R	5420635	intron	laccase2 +	chr2R_4_5415001	chr2R_5415001	EF65_1-HE
440	chr2R	5513385	5513433	chr2R	5515057	5515106	NOF	10	1671	4.0	4.0	4.0	2.0	1721	chr2R	5513385	intron	CG30438 +	chr2R	5514246	intron	CG30438 +	chr2R	5515106	intron	CG30438 +	chr2R_10_5510001	chr2R_5510001	EF65_1-HE
447	chr2R	5862593	5862637	chr2R	5863621	5863665	INE-1	12	1028	0.0	1.0	0.5	8.0	1072	chr2R	5862593	intergenic	not near genes	chr2R	5863129	intergenic	not near genes	chr2R	5863665	intergenic	not near genes	chr2R_12_5860001	chr2R_5860001	EF65_1-HE
448	chr2R	5869248	5869302	chr2R	5874350	5874404	flea	12	5102	1.0	2.5	1.8	4.3	5156	chr2R	5869248	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874404	intergenic	not near genes	chr2R_12_5870001	chr2R_5870001	EF65_1-HE
453	chr2R	6096701	6096721	chr2R	6101924	6101945	BS	11	5224	3.5	3.0	3.2	2.6	5244	chr2R	6096701	intron	EcR -	chr2R	6099323	intron	EcR -	chr2R	6101945	intron	EcR -	chr2R_11_6095001	chr2R_6095001	EF65_1-HE
454	chr2R	6494504	6494540	chr2R	6499292	6499328	F-element	5	4788	2.5	0.0	1.2	2.3	4824	chr2R	6494504	intergenic	not near genes	chr2R	6496916	intergenic	not near genes	chr2R	6499328	intergenic	not near genes	chr2R_5_6495001	chr2R_6495001	EF65_1-HE
466	chr2R	7235802	7235846	chr2R	7240920	7240964	jockey	9	5118	0.5	1.5	1.0	4.5	5162	chr2R	7235802	intergenic	not near genes	chr2R	7238383	intergenic	not near genes	chr2R	7240964	intergenic	not near genes	chr2R_9_7235001	chr2R_7235001	EF65_1-HE
480	chr2R	7869167	7869211	chr2R	7873979	7874023	Doc	8	4811	3.5	2.5	3.0	2.0	4856	chr2R	7869167	intron	Dgk -	chr2R	7871595	intron	Dgk -	chr2R	7874023	intron	Dgk -	chr2R_8_7870001	chr2R_7870001	EF65_1-HE
485	chr2R	8160919	8160945	chr2R	8161035	8161061	1360	10	116	3.5	9.0	6.2	1.4	142	chr2R	8160919	exon	CG8708 -	chr2R	8160990	intron	CG8708 -	chr2R	8161061	intron	CG8708 -	chr2R_10_8160001	chr2R_8160001	EF65_1-HE
489	chr2R	8398200	8398204	chr2R	8402997	8403011	Doc	4	4804	14.0	3.5	8.8	0.4	4811	chr2R	8398200	intron	CG2121 -	chr2R	8400606	intron	CG2121 -	chr2R	8403011	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	EF65_1-HE
490	chr2R	8398209	8398240	chr2R	8402993	8403047	Doc	7	4804	7.5	3.5	5.5	1.1	4838	chr2R	8398209	intron	CG2121 -	chr2R	8400628	intron	CG2121 -	chr2R	8403047	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	EF65_1-HE
493	chr2R	8566037	8566059	chr2R	8567009	8567031	1360	6	972	2.0	4.5	3.2	1.4	994	chr2R	8566037	5` UTR	Cyp6a14 -	chr2R	8566534	5` UTR	Cyp6a14 -	chr2R	8567031	5` UTR	Cyp6a14 -	chr2R_6_8565001	chr2R_8565001	EF65_1-HE
496	chr2R	8722739	8722792	chr2R	8723006	8723044	pogo	6	264	1.5	5.5	3.5	1.3	305	chr2R	8722739	intron	CG14767 -	chr2R	8722892	intron	CG14767 -	chr2R	8723044	intron	CG14767 -	chr2R_6_8720001	chr2R_8720001	EF65_1-HE
507	chr2R	9212673	9212717	chr2R	9213185	9213225	roo	10	512	4.0	2.5	3.2	2.4	552	chr2R	9212673	intergenic	CR45309 +	chr2R	9212949	intergenic	CR45309 +	chr2R	9213225	5` UTR	CR45309 +	chr2R_10_9210001	chr2R_9210001	EF65_1-HE
517	chr2R	9945417	9945455	chr2R	9945639	9945677	BS	7	222	2.5	1.0	1.8	2.5	260	chr2R	9945417	intron	Mef2 -	chr2R	9945547	intron	Mef2 -	chr2R	9945677	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	EF65_1-HE
520	chr2R	10005828	10005876	chr2R	10007019	10007064	1360	15	1190	5.5	4.5	5.0	2.5	1236	chr2R	10005828	intron	Pka-R2 -	chr2R	10006446	intron	Pka-R2 -	chr2R	10007064	intron	Pka-R2 -	chr2R_15_10005001	chr2R_10005001	EF65_1-HE
523	chr2R	10176879	10176892	chr2R	10186072	10186085	roo	4	9193	0.5	1.0	0.8	2.2	9206	chr2R	10176879	intron	KCNQ -	chr2R	10181482	intron	KCNQ -	chr2R	10186085	intron	KCNQ -	chr2R_4_10180001	chr2R_10180001	EF65_1-HE
531	chr2R	10585575	10585588	chr2R	10594184	10594197	Tirant	4	8609	1.5	6.0	3.8	0.8	8622	chr2R	10585575	intron	psq +	chr2R	10589886	intron	psq +	chr2R	10594197	intron	psq +	chr2R_4_10585001	chr2R_10585001	EF65_1-HE
537	chr2R	11009811	11009844	chr2R	11019011	11019044	roo	5	9200	3.0	5.0	4.0	1.0	9233	chr2R	11009811	intron	luna -	chr2R	11014428	intron	luna -	chr2R	11019044	intron	luna -	chr2R_5_11010001	chr2R_11010001	EF65_1-HE
541	chr2R	11207810	11207837	chr2R	11208029	11208056	BS	5	219	5.5	3.5	4.5	0.9	246	chr2R	11207810	intron	shn +	chr2R	11207933	intron	shn +	chr2R	11208056	intron	shn +	chr2R_5_11205001	chr2R_11205001	EF65_1-HE
545	chr2R	11297619	11297633	chr2R	11301966	11301980	flea	4	4346	2.5	1.0	1.8	1.4	4361	chr2R	11297619	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11301980	5` UTR	CG7741 +	chr2R_4_11295001	chr2R_11295001	EF65_1-HE
547	chr2R	11415495	11415549	chr2R	11418670	11418724	opus	7	3174	1.0	4.5	2.8	1.8	3229	chr2R	11415495	intron	Drip -	chr2R	11417110	intron	Drip -	chr2R	11418724	intron	Drip -	chr2R_7_11415001	chr2R_11415001	EF65_1-HE
548	chr2R	11472621	11472676	chr2R	11473844	11473899	pogo	11	1223	1.5	3.0	2.2	3.4	1278	chr2R	11472621	intergenic	not near genes	chr2R	11473260	intergenic	not near genes	chr2R	11473899	intergenic	not near genes	chr2R_11_11470001	chr2R_11470001	EF65_1-HE
565	chr2R	12481138	12481161	chr2R	12482968	12482991	roo	5	1828	3.0	4.0	3.5	1.1	1853	chr2R	12481138	exon	Dh44-R2 +	chr2R	12482064	intron	Dh44-R2 +	chr2R	12482991	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	EF65_1-HE
566	chr2R	12501672	12501711	chr2R	12503860	12503899	Rt1c	4	2188	3.0	1.5	2.2	1.2	2227	chr2R	12501672	intron	fdl -	chr2R	12502786	intron	fdl -	chr2R	12503899	intron	fdl -	chr2R_4_12500001	chr2R_12500001	EF65_1-HE
571	chr2R	12789267	12789323	chr2R	12797656	12797710	roo	11	8384	2.0	4.0	3.0	2.8	8443	chr2R	12789267	intron,3` UTR	sca +,CR45137 -	chr2R	12793488	intron,intron	sca +,CR45137 -	chr2R	12797710	intron,3` UTR	sca +,CR45137 -	chr2R_11_12790001	chr2R_12790001	EF65_1-HE
585	chr2R	13905586	13905635	chr2R	13907594	13907643	Rt1a	8	2008	0.0	5.5	2.8	2.1	2057	chr2R	13905586	intron	shot -	chr2R	13906614	intron	shot -	chr2R	13907643	intron	shot -	chr2R_8_13905001	chr2R_13905001	EF65_1-HE
589	chr2R	14467282	14467324	chr2R	14476466	14476508	roo	10	9184	2.0	3.0	2.5	2.9	9226	chr2R	14467282	intergenic	not near genes	chr2R	14471895	intergenic	not near genes	chr2R	14476508	5` UTR	CR44462 +	chr2R_10_14470001	chr2R_14470001	EF65_1-HE
595	chr2R	15015430	15015484	chr2R	15022879	15022934	mdg1	9	7450	3.5	1.5	2.5	2.6	7504	chr2R	15015430	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022934	intron	hbs +	chr2R_9_15015001	chr2R_15015001	EF65_1-HE
597	chr2R	15084956	15084993	chr2R	15092031	15092068	297	11	7075	3.0	3.5	3.2	2.6	7112	chr2R	15084956	intergenic	not near genes	chr2R	15088512	intergenic	not near genes	chr2R	15092068	5` UTR	CR44457 +	chr2R_11_15085001	chr2R_15085001	EF65_1-HE
600	chr2R	15119298	15119348	chr2R	15127805	15127855	Tirant	20	8507	3.5	5.5	4.5	3.6	8557	chr2R	15119298	intron	chn +	chr2R	15123576	intron	chn +	chr2R	15127855	intron	chn +	chr2R_20_15120001	chr2R_15120001	EF65_1-HE
623	chr2R	17236503	17236530	chr2R	17241732	17241760	copia	5	5228	2.0	6.0	4.0	1.0	5257	chr2R	17236503	intron	mbl +	chr2R	17239132	intron	mbl +	chr2R	17241760	intron	mbl +	chr2R_5_17235001	chr2R_17235001	EF65_1-HE
627	chr2R	17783999	17784057	chr2R	17784265	17784324	pogo	21	267	2.5	6.0	4.2	4.0	325	chr2R	17783999	intergenic	mir-31a -	chr2R	17784162	intergenic	mir-31a -	chr2R	17784324	intergenic	mir-31a -	chr2R_21_17780001	chr2R_17780001	EF65_1-HE
640	chr2R	18358375	18358403	chr2R	18372613	18372641	roo	6	14238	4.0	2.5	3.2	1.4	14266	chr2R	18358375	intergenic	not near genes	chr2R	18365508	intergenic	not near genes	chr2R	18372641	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	EF65_1-HE
644	chr2R	18487820	18487828	chr2R	18495297	18495305	blood	5	7477	2.5	0.0	1.2	2.3	7485	chr2R	18487820	intron	CG30116 -	chr2R	18491562	intron	CG30116 -	chr2R	18495305	intron	CG30116 -	chr2R_5_18490001	chr2R_18490001	EF65_1-HE
648	chr2R	18590843	18590901	chr2R	18600021	18600079	roo	13	9177	0.5	1.0	0.8	7.2	9236	chr2R	18590843	intron	GEFmeso -	chr2R	18595461	intron	GEFmeso -	chr2R	18600079	intron	GEFmeso -	chr2R_13_18595001	chr2R_18595001	EF65_1-HE
668	chr2R	19776572	19776619	chr2R	19779921	19779968	jockey	11	3349	1.5	2.0	1.8	3.9	3396	chr2R	19776572	intergenic	not near genes	chr2R	19778270	intergenic	not near genes	chr2R	19779968	intergenic	not near genes	chr2R_11_19775001	chr2R_19775001	EF65_1-HE
670	chr2R	19957406	19957457	chr2R	19962634	19962685	copia	8	5228	0.0	1.0	0.5	5.3	5279	chr2R	19957406	intergenic	CG44623 +	chr2R	19960046	intergenic	not near genes	chr2R	19962685	intergenic	not near genes	chr2R_8_19960001	chr2R_19960001	EF65_1-HE
673	chr2R	20069234	20069251	chr2R	20071876	20071906	opus	4	2652	0.0	1.0	0.5	2.7	2672	chr2R	20069234	intergenic	not near genes	chr2R	20070570	intergenic	not near genes	chr2R	20071906	intergenic	not near genes	chr2R_4_20070001	chr2R_20070001	EF65_1-HE
675	chr2R	20191464	20191479	chr2R	20191584	20191599	roo	5	119	10.5	0.0	5.2	0.8	135	chr2R	20191464	intergenic	not near genes	chr2R	20191532	intergenic	not near genes	chr2R	20191599	intergenic	not near genes	chr2R_5_20190001	chr2R_20190001	EF65_1-HE
683	chr2R	20739429	20739468	chr2R	20744223	20744262	F-element	5	4794	4.5	3.0	3.8	1.0	4833	chr2R	20739429	intron	dpr +	chr2R	20741846	intron	dpr +	chr2R	20744262	intron	dpr +	chr2R_5_20740001	chr2R_20740001	EF65_1-HE
688	chr2R	21151102	21151132	chr2R	21153761	21153791	opus	4	2659	2.0	3.5	2.8	1.1	2689	chr2R	21151102	intron	CG30389 -	chr2R	21152446	intron	CG30389 -	chr2R	21153791	intron	CG30389 -	chr2R_4_21150001	chr2R_21150001	EF65_1-HE
713	chr2R	22349673	22349713	chr2R	22351482	22351523	jockey	15	1809	7.5	1.5	4.5	2.7	1850	chr2R	22349673	intron	Liprin-gamma -	chr2R	22350598	intron	Liprin-gamma -	chr2R	22351523	intron	Liprin-gamma -	chr2R_15_22350001	chr2R_22350001	EF65_1-HE
718	chr2R	22525732	22525752	chr2R	22529313	22529331	jockey	4	3580	3.0	1.0	2.0	1.3	3599	chr2R	22525732	intron	px -	chr2R	22527532	intron	px -	chr2R	22529331	intron	px -	chr2R_4_22525001	chr2R_22525001	EF65_1-HE
737	chr2R	23529553	23529600	chr2R	23537155	23537202	412	17	7601	2.0	4.0	3.0	4.2	7649	chr2R	23529553	intron	bw -	chr2R	23533378	intron	bw -	chr2R	23537202	exon	bw -	chr2R_17_23530001	chr2R_23530001	EF65_1-HE
742	chr2R	23914293	23914322	chr2R	23921943	23921972	412	4	7650	2.0	5.0	3.5	0.9	7679	chr2R	23914293	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23921972	exon	kcc +	chr2R_4_23915001	chr2R_23915001	EF65_1-HE
746	chr2R	24147042	24147074	chr2R	24154646	24154678	412	8	7604	5.0	1.5	3.2	1.9	7636	chr2R	24147042	intron	Dat +	chr2R	24150860	intron	Dat +	chr2R	24154678	intron	Dat +	chr2R_8_24150001	chr2R_24150001	EF65_1-HE
747	chr2R	24177211	24177260	chr2R	24184722	24184771	412	5	7511	2.0	1.5	1.8	1.8	7560	chr2R	24177211	3` UTR	Nop60B +	chr2R	24180991	intron	Nop60B +	chr2R	24184771	3` UTR	Nop60B +	chr2R_5_24180001	chr2R_24180001	EF65_1-HE
756	chr2R	24647575	24647608	chr2R	24655158	24655191	412	4	7583	1.0	1.5	1.2	1.8	7616	chr2R	24647575	intergenic	not near genes	chr2R	24651383	intergenic	not near genes	chr2R	24655191	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	EF65_1-HE
757	chr2R	24727859	24727917	chr2R	24735393	24735451	mdg1	19	7533	4.0	3.5	3.8	4.0	7592	chr2R	24727859	intron	Mid1 -	chr2R	24731655	intron	Mid1 -	chr2R	24735451	intron	Mid1 -	chr2R_19_24730001	chr2R_24730001	EF65_1-HE
759	chr2R	24763594	24763636	chr2R	24765596	24765631	G2	7	2001	1.0	2.5	1.8	2.5	2037	chr2R	24763594	exon	CG3894 +	chr2R	24764612	intron	CG3894 +	chr2R	24765631	exon	CG3894 +	chr2R_7_24760001	chr2R_24760001	EF65_1-HE
771	chr3L	402661	402713	chr3L	409740	409792	297	21	7078	3.0	2.0	2.5	6.0	7131	chr3L	402661	intergenic	not near genes	chr3L	406226	intergenic	not near genes	chr3L	409792	intergenic	not near genes	chr3L_21_405001	chr3L_405001	EF65_1-HE
781	chr3L	857974	858013	chr3L	866481	866520	Tirant	16	8505	4.5	5.0	4.8	2.8	8546	chr3L	857974	intergenic	not near genes	chr3L	862247	intergenic	not near genes	chr3L	866520	5` UTR	CG12502 +	chr3L_16_860001	chr3L_860001	EF65_1-HE
782	chr3L	925175	925208	chr3L	932605	932660	mdg1	6	7448	2.0	0.5	1.2	2.7	7485	chr3L	925175	intron	Glut1 +	chr3L	928918	intron	Glut1 +	chr3L	932660	intron	Glut1 +	chr3L_6_925001	chr3L_925001	EF65_1-HE
783	chr3L	939751	939798	chr3L	940898	940945	jockey	13	1147	6.0	5.5	5.8	1.9	1194	chr3L	939751	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940945	intron	Glut1 +	chr3L_13_940001	chr3L_940001	EF65_1-HE
791	chr3L	1219573	1219611	chr3L	1227332	1227370	412	8	7758	2.0	4.0	3.0	2.0	7797	chr3L	1219573	intron	mwh +	chr3L	1223472	intron	mwh +	chr3L	1227370	intron	mwh +	chr3L_8_1220001	chr3L_1220001	EF65_1-HE
801	chr3L	1485724	1485736	chr3L	1486911	1486913	1360	5	1184	3.5	6.0	4.8	0.9	1189	chr3L	1485724	intron	stet -	chr3L	1486318	intron	stet -	chr3L	1486913	intron	stet -	chr3L_5_1485001	chr3L_1485001	EF65_1-HE
802	chr3L	1490269	1490302	chr3L	1491029	1491062	1360	4	760	0.5	1.5	1.0	2.0	793	chr3L	1490269	intergenic	not near genes	chr3L	1490666	intergenic	CG12084 -	chr3L	1491062	3` UTR	CG12084 -	chr3L_4_1490001	chr3L_1490001	EF65_1-HE
803	chr3L	1505970	1506030	chr3L	1513593	1513653	17.6	11	7621	2.5	1.0	1.8	3.9	7683	chr3L	1505970	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513653	intron,intron	Psa +,cue -	chr3L_11_1505001	chr3L_1505001	EF65_1-HE
831	chr3L	3061260	3061311	chr3L	3069869	3069920	Tirant	27	8609	3.0	10.5	6.8	3.5	8660	chr3L	3061260	intron	CG32486 -	chr3L	3065590	intron	CG32486 -	chr3L	3069920	intron	CG32486 -	chr3L_27_3065001	chr3L_3065001	EF65_1-HE
836	chr3L	3281421	3281440	chr3L	3281942	3281959	Doc	6	519	9.0	7.5	8.2	0.7	538	chr3L	3281421	intron	CG12017 +	chr3L	3281690	intron	CG12017 +	chr3L	3281959	intron	CG12017 +	chr3L_6_3280001	chr3L_3280001	EF65_1-HE
839	chr3L	3475051	3475089	chr3L	3475521	3475558	jockey	9	470	3.0	5.5	4.2	1.7	507	chr3L	3475051	intron	CG42324 +	chr3L	3475304	intron	CG42324 +	chr3L	3475558	intron	CG42324 +	chr3L_9_3475001	chr3L_3475001	EF65_1-HE
843	chr3L	3601284	3601329	chr3L	3606621	3606666	copia	6	5337	1.0	4.0	2.5	1.7	5382	chr3L	3601284	intron	Eip63E +	chr3L	3603975	intron	Eip63E +	chr3L	3606666	intron	Eip63E +	chr3L_6_3600001	chr3L_3600001	EF65_1-HE
853	chr3L	3833728	3833737	chr3L	3833995	3834004	pogo	4	267	4.0	0.0	2.0	1.3	276	chr3L	3833728	intron	enc +	chr3L	3833866	intron	enc +	chr3L	3834004	intron	enc +	chr3L_4_3830001	chr3L_3830001	EF65_1-HE
863	chr3L	4328730	4328751	chr3L	4336254	4336275	412	8	7524	2.5	1.0	1.8	2.9	7545	chr3L	4328730	intron	Cip4 -	chr3L	4332502	intron	Cip4 -	chr3L	4336275	exon	Cip4 -	chr3L_8_4330001	chr3L_4330001	EF65_1-HE
888	chr3L	5926297	5926345	chr3L	5926513	5926552	BS	8	215	1.5	2.5	2.0	2.7	255	chr3L	5926297	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926552	intron	Vap-33B +	chr3L_8_5925001	chr3L_5925001	EF65_1-HE
889	chr3L	6001692	6001705	chr3L	6004417	6004430	jockey	4	2726	1.5	4.5	3.0	1.0	2738	chr3L	6001692	intron	PVRAP +	chr3L	6003061	intron	PVRAP +	chr3L	6004430	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	EF65_1-HE
890	chr3L	6040341	6040394	chr3L	6042723	6042776	Doc	6	2382	0.5	2.5	1.5	2.4	2435	chr3L	6040341	intergenic	Jon65Aiv +	chr3L	6041558	intergenic	not near genes	chr3L	6042776	intergenic	not near genes	chr3L_6_6040001	chr3L_6040001	EF65_1-HE
895	chr3L	6220912	6220948	chr3L	6230089	6230121	roo	5	9174	0.5	2.0	1.2	2.3	9209	chr3L	6220912	5` UTR	pncr008:3L +	chr3L	6225516	intergenic	not near genes	chr3L	6230121	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	EF65_1-HE
896	chr3L	6334984	6335031	chr3L	6335479	6335526	297	9	494	4.0	4.0	4.0	1.8	542	chr3L	6334984	intron	CG13300 -	chr3L	6335255	intron	CG13300 -	chr3L	6335526	intron	CG13300 -	chr3L_9_6335001	chr3L_6335001	EF65_1-HE
900	chr3L	6620586	6620601	chr3L	6621052	6621067	Rt1c	8	466	4.0	6.5	5.2	1.3	481	chr3L	6620586	intergenic	not near genes	chr3L	6620826	intergenic	not near genes	chr3L	6621067	intergenic	not near genes	chr3L_8_6620001	chr3L_6620001	EF65_1-HE
902	chr3L	6855919	6855950	chr3L	6860720	6860760	Doc	7	4809	3.5	3.5	3.5	1.6	4841	chr3L	6855919	intergenic	not near genes	chr3L	6858340	intergenic	not near genes	chr3L	6860760	intergenic	not near genes	chr3L_7_6855001	chr3L_6855001	EF65_1-HE
903	chr3L	6887491	6887516	chr3L	6895009	6895034	roo	4	7518	1.0	0.0	0.5	2.7	7543	chr3L	6887491	intergenic	not near genes	chr3L	6891262	intergenic	not near genes	chr3L	6895034	intergenic	not near genes	chr3L_4_6890001	chr3L_6890001	EF65_1-HE
914	chr3L	7498743	7498771	chr3L	7503546	7503574	F-element	4	4803	3.5	1.0	2.2	1.2	4831	chr3L	7498743	5` UTR	CG8539 -	chr3L	7501158	intergenic	not near genes	chr3L	7503574	intergenic	not near genes	chr3L_4_7500001	chr3L_7500001	EF65_1-HE
919	chr3L	7793685	7793727	chr3L	7800763	7800805	297	7	7078	1.0	0.5	0.8	3.9	7120	chr3L	7793685	intron	CG32369 -	chr3L	7797245	intron	CG32369 -	chr3L	7800805	intron	CG32369 -	chr3L_7_7795001	chr3L_7795001	EF65_1-HE
922	chr3L	7886491	7886538	chr3L	7889035	7889081	Stalker4	4	2544	0.5	0.0	0.2	3.3	2590	chr3L	7886491	intron	CG32365 +	chr3L	7887786	intron	CG32365 +	chr3L	7889081	intron	CG32365 +	chr3L_4_7885001	chr3L_7885001	EF65_1-HE
927	chr3L	8233577	8233589	chr3L	8238867	8238876	Rt1a	7	5289	2.0	8.5	5.2	1.1	5299	chr3L	8233577	intron	CG7213 -	chr3L	8236226	intron	CG7213 -	chr3L	8238876	intron,intron	CG7213 -,Dscam4 +	chr3L_7_8235001	chr3L_8235001	EF65_1-HE
935	chr3L	8481745	8481798	chr3L	8490930	8490983	roo	6	9185	2.5	0.0	1.2	2.7	9238	chr3L	8481745	intron	CG43163 -	chr3L	8486364	intron	CG43163 -	chr3L	8490983	intron	CG43163 -	chr3L_6_8485001	chr3L_8485001	EF65_1-HE
948	chr3L	9076914	9076950	chr3L	9084500	9084536	412	11	7586	6.0	5.0	5.5	1.7	7622	chr3L	9076914	exon	Tequila +	chr3L	9080725	intron	Tequila +	chr3L	9084536	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	EF65_1-HE
949	chr3L	9130532	9130580	chr3L	9134319	9134367	412	12	3787	3.5	5.0	4.2	2.3	3835	chr3L	9130532	intergenic	bol -	chr3L	9132450	intergenic	not near genes	chr3L	9134367	intergenic	Dhpr +	chr3L_12_9130001	chr3L_9130001	EF65_1-HE
950	chr3L	9164674	9164705	chr3L	9166167	9166198	hobo	5	1493	5.5	0.0	2.8	1.3	1524	chr3L	9164674	intron	Rdl -	chr3L	9165436	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	EF65_1-HE
952	chr3L	9219222	9219268	chr3L	9219920	9219966	jockey	14	697	4.0	4.5	4.2	2.7	744	chr3L	9219222	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219966	intergenic	not near genes	chr3L_14_9215001	chr3L_9215001	EF65_1-HE
954	chr3L	9270604	9270648	chr3L	9278381	9278425	roo	14	7771	1.5	6.0	3.8	2.9	7821	chr3L	9270604	intron	GluRIB +	chr3L	9274514	intron	GluRIB +	chr3L	9278425	exon	GluRIB +	chr3L_14_9270001	chr3L_9270001	EF65_1-HE
958	chr3L	9533733	9533784	chr3L	9541315	9541370	412	6	7584	7.5	7.0	7.2	0.7	7637	chr3L	9533733	intergenic	not near genes	chr3L	9537552	intergenic	not near genes	chr3L	9541370	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	EF65_1-HE
959	chr3L	9575898	9575925	chr3L	9581002	9581029	jockey	11	5104	4.0	3.5	3.8	2.3	5131	chr3L	9575898	intron	CG42673 +	chr3L	9578464	intron	CG42673 +	chr3L	9581029	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	EF65_1-HE
983	chr3L	11087016	11087081	chr3L	11088848	11088896	S-element	5	1822	0.0	0.5	0.2	4.2	1880	chr3L	11087016	intron	JIL-1 -	chr3L	11087956	intron	JIL-1 -	chr3L	11088896	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	EF65_1-HE
987	chr3L	11277436	11277478	chr3L	11278457	11278499	Rt1a	9	1021	4.0	3.5	3.8	1.9	1063	chr3L	11277436	intergenic	not near genes	chr3L	11277968	intergenic	not near genes	chr3L	11278499	intergenic	not near genes	chr3L_9_11275001	chr3L_11275001	EF65_1-HE
993	chr3L	11864527	11864579	chr3L	11865848	11865900	pogo	11	1321	5.0	4.0	4.5	2.0	1373	chr3L	11864527	intron	CG44837 -	chr3L	11865214	intron	CG44837 -	chr3L	11865900	intron	CG44837 -	chr3L_11_11865001	chr3L_11865001	EF65_1-HE
1009	chr3L	12874897	12874941	chr3L	12877215	12877259	jockey	4	2318	2.0	0.5	1.2	1.8	2362	chr3L	12874897	intergenic	not near genes	chr3L	12876078	intergenic	not near genes	chr3L	12877259	intergenic	not near genes	chr3L_4_12875001	chr3L_12875001	EF65_1-HE
1011	chr3L	12919253	12919279	chr3L	12924752	12924778	Rt1c	9	5498	6.0	2.5	4.2	1.7	5525	chr3L	12919253	intergenic	not near genes	chr3L	12922016	intergenic	not near genes	chr3L	12924778	intergenic	not near genes	chr3L_9_12920001	chr3L_12920001	EF65_1-HE
1026	chr3L	13525143	13525166	chr3L	13532965	13532988	roo	4	7822	3.0	3.5	3.2	1.0	7845	chr3L	13525143	intergenic	not near genes	chr3L	13529066	intergenic	not near genes	chr3L	13532988	intergenic	not near genes	chr3L_4_13525001	chr3L_13525001	EF65_1-HE
1029	chr3L	13574610	13574619	chr3L	13580147	13580155	Rt1c	6	5537	6.0	7.0	6.5	0.8	5545	chr3L	13574610	intron	bru-3 -	chr3L	13577382	intron	bru-3 -	chr3L	13580155	intron	bru-3 -	chr3L_6_13575001	chr3L_13575001	EF65_1-HE
1034	chr3L	13804522	13804571	chr3L	13822834	13822882	roo	13	18312	6.5	6.0	6.2	1.8	18360	chr3L	13804522	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822882	intergenic	not near genes	chr3L_13_13810001	chr3L_13810001	EF65_1-HE
1041	chr3L	14245550	14245594	chr3L	14245670	14245714	1360	15	120	7.0	4.5	5.8	2.2	164	chr3L	14245550	3` UTR	CR44561 -	chr3L	14245632	3` UTR	CR44561 -	chr3L	14245714	intergenic	CR44561 -,CR44560 +	chr3L_15_14245001	chr3L_14245001	EF65_1-HE
1042	chr3L	14295958	14296013	chr3L	14296470	14296525	roo	21	512	6.0	8.5	7.2	2.6	567	chr3L	14295958	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296525	intron	fz +	chr3L_21_14295001	chr3L_14295001	EF65_1-HE
1043	chr3L	14312000	14312049	chr3L	14316840	14316889	X-element	8	4838	1.5	4.0	2.8	2.1	4889	chr3L	14312000	exon	fz +	chr3L	14314444	intron	fz +	chr3L	14316889	intron	fz +	chr3L_8_14310001	chr3L_14310001	EF65_1-HE
1050	chr3L	14468433	14468461	chr3L	14473665	14473693	copia	7	5232	4.0	3.0	3.5	1.6	5260	chr3L	14468433	intron	bbg -	chr3L	14471063	intron	bbg -	chr3L	14473693	intron	bbg -	chr3L_7_14470001	chr3L_14470001	EF65_1-HE
1054	chr3L	14721167	14721206	chr3L	14723036	14723075	Rt1c	11	1869	2.5	6.0	4.2	2.1	1908	chr3L	14721167	intron	ome +	chr3L	14722121	intron	ome +	chr3L	14723075	intron	ome +	chr3L_11_14720001	chr3L_14720001	EF65_1-HE
1069	chr3L	15295740	15295755	chr3L	15298609	15298624	gypsy5	4	2869	3.0	2.0	2.5	1.1	2884	chr3L	15295740	intergenic	not near genes	chr3L	15297182	intergenic	not near genes	chr3L	15298624	intergenic	Best4 +	chr3L_4_15295001	chr3L_15295001	EF65_1-HE
1072	chr3L	15423741	15423780	chr3L	15426611	15426650	opus	5	2870	1.5	0.0	0.8	2.8	2909	chr3L	15423741	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426650	intergenic	not near genes	chr3L_5_15425001	chr3L_15425001	EF65_1-HE
1075	chr3L	15554906	15554934	chr3L	15556719	15556747	S-element	6	1813	1.0	4.0	2.5	1.7	1841	chr3L	15554906	intron	AGO2 +	chr3L	15555826	intron	AGO2 +	chr3L	15556747	intron	AGO2 +	chr3L_6_15555001	chr3L_15555001	EF65_1-HE
1081	chr3L	15899203	15899230	chr3L	15899795	15899816	jockey	6	590	5.0	3.5	4.2	1.2	613	chr3L	15899203	intergenic	pHCl -	chr3L	15899510	intergenic	pHCl -	chr3L	15899816	intergenic	sff -	chr3L_6_15895001	chr3L_15895001	EF65_1-HE
1091	chr3L	16493949	16494008	chr3L	16494492	16494530	jockey	15	542	5.0	3.5	4.2	2.9	581	chr3L	16493949	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494240	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494530	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_15_16490001	chr3L_16490001	EF65_1-HE
1097	chr3L	16945712	16945739	chr3L	16954891	16954918	roo	12	9179	9.5	5.5	7.5	1.4	9206	chr3L	16945712	exon	Obp73a +	chr3L	16950315	intergenic	not near genes	chr3L	16954918	5` UTR	Nc73EF +	chr3L_12_16950001	chr3L_16950001	EF65_1-HE
1098	chr3L	17084980	17085033	chr3L	17094155	17094208	roo	14	9175	8.0	9.0	8.5	1.5	9228	chr3L	17084980	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094208	intron	Rbp6 -	chr3L_14_17085001	chr3L_17085001	EF65_1-HE
1101	chr3L	17516955	17517008	chr3L	17524539	17524592	412	4	7584	2.0	1.5	1.8	1.4	7637	chr3L	17516955	intron	CG7564 +	chr3L	17520774	intron	CG7564 +	chr3L	17524592	3` UTR	CG7564 +	chr3L_4_17520001	chr3L_17520001	EF65_1-HE
1123	chr3L	18772394	18772433	chr3L	18781101	18781140	roo	5	8707	2.0	3.5	2.8	1.3	8746	chr3L	18772394	intron	ftz-f1 -	chr3L	18776767	intron	ftz-f1 -	chr3L	18781140	intron	ftz-f1 -	chr3L_5_18775001	chr3L_18775001	EF65_1-HE
1128	chr3L	18833763	18833789	chr3L	18834953	18834979	1360	4	1190	3.5	1.0	2.2	1.2	1216	chr3L	18833763	intron	Indy -	chr3L	18834371	intron	Indy -	chr3L	18834979	intron	Indy -	chr3L_4_18830001	chr3L_18830001	EF65_1-HE
1136	chr3L	19117017	19117057	chr3L	19124490	19124530	mdg1	10	7473	2.5	1.5	2.0	3.3	7513	chr3L	19117017	intron	CG14082 -	chr3L	19120774	intron	CG14082 -	chr3L	19124530	intron	CG14082 -	chr3L_10_19120001	chr3L_19120001	EF65_1-HE
1138	chr3L	19208037	19208090	chr3L	19209437	19209490	Doc	11	1400	3.0	3.5	3.2	2.6	1453	chr3L	19208037	intron	fz2 -	chr3L	19208764	intron	fz2 -	chr3L	19209490	intron	fz2 -	chr3L_11_19205001	chr3L_19205001	EF65_1-HE
1143	chr3L	19398914	19398931	chr3L	19403657	19403674	F-element	5	4742	2.5	6.0	4.2	1.0	4760	chr3L	19398914	intron	CG32206 -	chr3L	19401294	intron	CG32206 -	chr3L	19403674	intron	CG32206 -	chr3L_5_19400001	chr3L_19400001	EF65_1-HE
1150	chr3L	20113640	20113673	chr3L	20122923	20122956	roo	5	9283	1.0	0.5	0.8	2.8	9316	chr3L	20113640	intergenic	not near genes	chr3L	20118298	intergenic	not near genes	chr3L	20122956	intergenic	not near genes	chr3L_5_20115001	chr3L_20115001	EF65_1-HE
1154	chr3L	20257309	20257362	chr3L	20258455	20258505	pogo	9	1146	3.5	1.5	2.5	2.6	1196	chr3L	20257309	intron	rdgC +	chr3L	20257907	intron	rdgC +	chr3L	20258505	intron	rdgC +	chr3L_9_20255001	chr3L_20255001	EF65_1-HE
1156	chr3L	20590041	20590094	chr3L	20590606	20590659	412	14	564	1.5	2.5	2.0	4.7	618	chr3L	20590041	intergenic	not near genes	chr3L	20590350	intergenic	not near genes	chr3L	20590659	intergenic	not near genes	chr3L_14_20590001	chr3L_20590001	EF65_1-HE
1162	chr3L	21014894	21014947	chr3L	21023401	21023454	Tirant	36	8506	8.0	10.0	9.0	3.6	8560	chr3L	21014894	intron	skd -	chr3L	21019174	intron	skd -	chr3L	21023454	intron	skd -	chr3L_36_21015001	chr3L_21015001	EF65_1-HE
1166	chr3L	21151850	21151894	chr3L	21156960	21157004	flea	8	5109	2.5	2.0	2.2	2.5	5154	chr3L	21151850	intron	Ac78C -	chr3L	21154427	intron	Ac78C -	chr3L	21157004	intron	Ac78C -	chr3L_8_21150001	chr3L_21150001	EF65_1-HE
1174	chr3L	21498826	21498859	chr3L	21500488	21500521	1360	10	1662	2.0	4.0	3.0	2.5	1695	chr3L	21498826	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499674	intron	Glg1 -	chr3L	21500521	intron	Glg1 -	chr3L_10_21495001	chr3L_21495001	EF65_1-HE
1194	chr3L	22099663	22099697	chr3L	22105875	22105909	3S18	6	6212	3.5	6.5	5.0	1.0	6246	chr3L	22099663	intergenic	not near genes	chr3L	22102786	intergenic	not near genes	chr3L	22105909	intergenic	not near genes	chr3L_6_22100001	chr3L_22100001	EF65_1-HE
1201	chr3L	22555747	22555797	chr3L	22563243	22563293	blood	12	7494	2.0	2.5	2.2	3.8	7546	chr3L	22555747	intergenic	not near genes	chr3L	22559520	intergenic	not near genes	chr3L	22563293	intergenic	not near genes	chr3L_12_22555001	chr3L_22555001	EF65_1-HE
1202	chr3L	22577599	22577645	chr3L	22582413	22582459	Doc	15	4812	3.5	2.5	3.0	3.8	4860	chr3L	22577599	intergenic	not near genes	chr3L	22580029	intergenic	not near genes	chr3L	22582459	3` UTR	CG14459 -	chr3L_15_22580001	chr3L_22580001	EF65_1-HE
1203	chr3L	22617178	22617189	chr3L	22624656	22624667	blood	4	7478	3.0	1.5	2.2	1.2	7489	chr3L	22617178	intron	CG14459 -	chr3L	22620922	intron	CG14459 -	chr3L	22624667	intron	CG14459 -	chr3L_4_22620001	chr3L_22620001	EF65_1-HE
1204	chr3L	22761366	22761401	chr3L	22766826	22766861	Ivk	7	5460	4.0	2.0	3.0	1.8	5495	chr3L	22761366	intron	SPoCk +	chr3L	22764114	intron	SPoCk +	chr3L	22766861	intron	SPoCk +	chr3L_7_22760001	chr3L_22760001	EF65_1-HE
1210	chr3L	23042220	23042242	chr3L	23048999	23049021	gypsy6	5	6779	2.0	1.5	1.8	1.8	6801	chr3L	23042220	intergenic	not near genes	chr3L	23045620	intergenic	not near genes	chr3L	23049021	intergenic	not near genes	chr3L_5_23045001	chr3L_23045001	EF65_1-HE
1220	chr3L	24021259	24021299	chr3L	24022442	24022482	1360	5	1183	1.0	1.5	1.2	2.3	1223	chr3L	24021259	intergenic	not near genes	chr3L	24021870	intergenic	not near genes	chr3L	24022482	intergenic	not near genes	chr3L_5_24020001	chr3L_24020001	EF65_1-HE
1221	chr3L	24168765	24168821	chr3L	24176116	24176175	ZAM	27	7354	5.5	2.0	3.8	5.6	7410	chr3L	24168765	intron	Snap25 +	chr3L	24172470	intron	Snap25 +	chr3L	24176175	intron	Snap25 +	chr3L_27_24170001	chr3L_24170001	EF65_1-HE
1226	chr3L	25628483	25628522	chr3L	25633280	25633319	F-element	6	4797	4.5	4.0	4.2	1.2	4836	chr3L	25628483	intron	CG41343 -	chr3L	25630901	intron	CG41343 -	chr3L	25633319	intron	CG41343 -	chr3L_6_25630001	chr3L_25630001	EF65_1-HE
1227	chr3L	25824652	25824662	chr3L	27273495	27273498	F-element	6	1448841	39.0	13.0	26.0	0.2	1448846	chr3L	25824652	intron	CG40178 -	chr3L	26549075	intergenic	not near genes	chr3L	27273498	intergenic	not near genes	chr3L_6_26545001	chr3L_26545001	EF65_1-HE
1232	chr3L	27727619	27727647	chr3L	27728751	27728776	G-element	5	1131	3.0	1.5	2.2	1.6	1157	chr3L	27727619	intergenic	not near genes	chr3L	27728198	intergenic	not near genes	chr3L	27728776	intergenic	not near genes	chr3L_5_27725001	chr3L_27725001	EF65_1-HE
1233	chr3L	27980693	27980719	chr3L	27985514	27985540	Doc	5	4821	2.0	1.0	1.5	2.0	4847	chr3L	27980693	intron	CG17514 -	chr3L	27983116	intron	CG17514 -	chr3L	27985540	intron	CG17514 -	chr3L_5_27980001	chr3L_27980001	EF65_1-HE
1242	chr3R	4609525	4609571	chr3R	4610715	4610761	1360	10	1190	3.0	4.0	3.5	2.2	1236	chr3R	4609525	intergenic	not near genes	chr3R	4610143	intergenic	not near genes	chr3R	4610761	intergenic	not near genes	chr3R_10_4610001	chr3R_4610001	EF65_1-HE
1244	chr3R	4683156	4683208	chr3R	4684941	4684993	S-element	10	1785	3.0	4.5	3.8	2.1	1837	chr3R	4683156	intron	CG43427 +	chr3R	4684074	intron	CG43427 +	chr3R	4684993	intron	CG43427 +	chr3R_10_4680001	chr3R_4680001	EF65_1-HE
1245	chr3R	4753230	4753263	chr3R	4757559	4757592	F-element	6	4329	3.5	8.0	5.8	0.9	4362	chr3R	4753230	intron,intron	atms +,CG44098 -	chr3R	4755411	intron,intron	atms +,CG44098 -	chr3R	4757592	intron,exon	atms +,CG44098 -	chr3R_6_4755001	chr3R_4755001	EF65_1-HE
1246	chr3R	4759698	4759745	chr3R	4761221	4761262	hopper2	13	1522	0.5	3.0	1.8	4.6	1564	chr3R	4759698	intron,intron	atms +,CG44098 -	chr3R	4760480	intron,intron	atms +,CG44098 -	chr3R	4761262	intron,intron	atms +,CG44098 -	chr3R_13_4760001	chr3R_4760001	EF65_1-HE
1254	chr3R	5045833	5045867	chr3R	5052961	5052994	HMS-Beagle	5	7128	1.0	1.0	1.0	2.5	7161	chr3R	5045833	intron	CR43635 -	chr3R	5049414	intergenic	not near genes	chr3R	5052994	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	EF65_1-HE
1255	chr3R	5067955	5068003	chr3R	5073498	5073546	mdg3	10	5543	1.0	5.5	3.2	2.4	5591	chr3R	5067955	intergenic	not near genes	chr3R	5070750	intergenic	not near genes	chr3R	5073546	intergenic	not near genes	chr3R_10_5070001	chr3R_5070001	EF65_1-HE
1259	chr3R	5338374	5338420	chr3R	5343577	5343623	Rt1c	16	5203	6.5	8.0	7.2	2.0	5249	chr3R	5338374	intron	mtd -	chr3R	5340998	intron	mtd -	chr3R	5343623	intron	mtd -	chr3R_16_5340001	chr3R_5340001	EF65_1-HE
1267	chr3R	5809098	5809139	chr3R	5809365	5809405	pogo	4	267	2.0	2.0	2.0	1.3	307	chr3R	5809098	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809405	3` UTR	CG11000 +	chr3R_4_5805001	chr3R_5805001	EF65_1-HE
1268	chr3R	5822366	5822404	chr3R	5823559	5823597	1360	4	1193	2.0	2.5	2.2	1.2	1231	chr3R	5822366	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823597	3` UTR	CG2023 -	chr3R_4_5820001	chr3R_5820001	EF65_1-HE
1273	chr3R	5927543	5927584	chr3R	5927809	5927850	pogo	5	266	2.0	3.0	2.5	1.4	307	chr3R	5927543	intron	CG34113 -	chr3R	5927696	intron	CG34113 -	chr3R	5927850	intron	CG34113 -	chr3R_5_5925001	chr3R_5925001	EF65_1-HE
1275	chr3R	6015940	6015994	chr3R	6024447	6024501	Tirant	14	8506	1.5	3.5	2.5	4.0	8561	chr3R	6015940	intergenic	not near genes	chr3R	6020220	intergenic	not near genes	chr3R	6024501	intergenic	not near genes	chr3R_14_6020001	chr3R_6020001	EF65_1-HE
1279	chr3R	6158490	6158520	chr3R	6167098	6167117	Tirant	5	8606	5.0	4.0	4.5	0.9	8627	chr3R	6158490	intergenic	not near genes	chr3R	6162804	intergenic	not near genes	chr3R	6167117	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	EF65_1-HE
1280	chr3R	6206264	6206307	chr3R	6206507	6206550	BS	10	240	3.0	2.0	2.5	2.9	286	chr3R	6206264	exon	Osi24 +	chr3R	6206407	intron	Osi24 +	chr3R	6206550	intron	Osi24 +	chr3R_10_6205001	chr3R_6205001	EF65_1-HE
1285	chr3R	6737481	6737524	chr3R	6739294	6739337	Doc	7	1811	1.0	5.5	3.2	1.7	1856	chr3R	6737481	intron	pb -	chr3R	6738409	intron	pb -	chr3R	6739337	intron	pb -	chr3R_7_6735001	chr3R_6735001	EF65_1-HE
1302	chr3R	7729443	7729494	chr3R	7737407	7737447	Stalker2	7	7962	0.5	4.5	2.5	2.0	8004	chr3R	7729443	intergenic	not near genes	chr3R	7733445	intergenic	not near genes	chr3R	7737447	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	EF65_1-HE
1307	chr3R	8090539	8090564	chr3R	8094042	8094067	297	6	3503	3.5	11.0	7.2	0.7	3528	chr3R	8090539	intergenic	CR44330 +	chr3R	8092303	intergenic	not near genes	chr3R	8094067	intergenic	CG7900 +	chr3R_6_8090001	chr3R_8090001	EF65_1-HE
1308	chr3R	8101739	8101781	chr3R	8104849	8104891	G2	9	3110	4.0	1.5	2.8	2.4	3152	chr3R	8101739	exon	CG7900 +	chr3R	8103315	intron	CG7900 +	chr3R	8104891	3` UTR	CG7900 +	chr3R_9_8100001	chr3R_8100001	EF65_1-HE
1311	chr3R	8207545	8207555	chr3R	8208416	8208426	F-element	4	871	2.5	2.0	2.2	1.2	881	chr3R	8207545	intergenic	not near genes	chr3R	8207986	intergenic	not near genes	chr3R	8208426	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	EF65_1-HE
1312	chr3R	8207559	8207572	chr3R	8208403	8208443	F-element	6	866	2.0	2.0	2.0	2.0	884	chr3R	8207559	intergenic	not near genes	chr3R	8208001	intergenic	not near genes	chr3R	8208443	intergenic	not near genes	chr3R_6_8205001	chr3R_8205001	EF65_1-HE
1314	chr3R	8402984	8403036	chr3R	8412176	8412228	roo	29	9192	16.0	6.5	11.2	2.4	9244	chr3R	8402984	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412228	intron	CG45263 -	chr3R_29_8405001	chr3R_8405001	EF65_1-HE
1319	chr3R	8601751	8601794	chr3R	8610930	8610947	roo	4	9172	1.0	2.0	1.5	1.6	9196	chr3R	8601751	intron	5-HT2B +	chr3R	8606349	intron	5-HT2B +	chr3R	8610947	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	EF65_1-HE
1321	chr3R	8707333	8707377	chr3R	8709799	8709844	jockey	7	2467	9.0	3.0	6.0	1.0	2511	chr3R	8707333	intergenic	not near genes	chr3R	8708588	intergenic	not near genes	chr3R	8709844	intergenic	not near genes	chr3R_7_8705001	chr3R_8705001	EF65_1-HE
1328	chr3R	8894850	8894904	chr3R	8896032	8896086	1360	7	1182	1.0	0.5	0.8	3.9	1236	chr3R	8894850	intron	pyd -	chr3R	8895468	intron	pyd -	chr3R	8896086	intron	pyd -	chr3R_7_8895001	chr3R_8895001	EF65_1-HE
1339	chr3R	9278762	9278805	chr3R	9284048	9284091	Rt1a	8	5286	0.5	4.0	2.2	2.5	5329	chr3R	9278762	intergenic	not near genes	chr3R	9281426	intergenic	not near genes	chr3R	9284091	intergenic	not near genes	chr3R_8_9280001	chr3R_9280001	EF65_1-HE
1340	chr3R	9319554	9319599	chr3R	9320014	9320060	jockey	10	461	4.5	3.0	3.8	2.1	506	chr3R	9319554	intron	CG8861 -	chr3R	9319807	intron	CG8861 -	chr3R	9320060	intron	CG8861 -	chr3R_10_9315001	chr3R_9315001	EF65_1-HE
1342	chr3R	9361808	9361840	chr3R	9362075	9362107	pogo	4	267	0.0	1.0	0.5	2.7	299	chr3R	9361808	3` UTR	CG45050 +	chr3R	9361958	3` UTR	CG45050 +	chr3R	9362107	3` UTR	CG45050 +	chr3R_4_9360001	chr3R_9360001	EF65_1-HE
1348	chr3R	9699957	9699995	chr3R	9700072	9700110	1360	6	115	7.5	7.5	7.5	0.7	153	chr3R	9699957	intron	Unc-115a -	chr3R	9700034	intron	Unc-115a -	chr3R	9700110	intron	Unc-115a -	chr3R_6_9700001	chr3R_9700001	EF65_1-HE
1358	chr3R	10231772	10231813	chr3R	10237375	10237416	mdg3	10	5603	2.0	3.0	2.5	2.9	5644	chr3R	10231772	intron	CG42795 +	chr3R	10234594	intron	CG42795 +	chr3R	10237416	intron	CG42795 +	chr3R_10_10230001	chr3R_10230001	EF65_1-HE
1367	chr3R	10957860	10957885	chr3R	10963263	10963288	Rt1c	11	5403	8.5	6.5	7.5	1.3	5428	chr3R	10957860	intergenic	not near genes	chr3R	10960574	intergenic	not near genes	chr3R	10963288	intergenic	not near genes	chr3R_11_10960001	chr3R_10960001	EF65_1-HE
1379	chr3R	11379214	11379248	chr3R	11388395	11388429	roo	9	9180	5.5	4.0	4.8	1.6	9215	chr3R	11379214	intron	pros +	chr3R	11383822	intron	pros +	chr3R	11388429	intron	pros +	chr3R_9_11380001	chr3R_11380001	EF65_1-HE
1383	chr3R	11841041	11841090	chr3R	11846258	11846300	BS	11	5216	3.5	5.5	4.5	2.0	5259	chr3R	11841041	intron	CG6959 -	chr3R	11843670	intron	CG6959 -	chr3R	11846300	intron	CG6959 -	chr3R_11_11840001	chr3R_11840001	EF65_1-HE
1387	chr3R	12022858	12022910	chr3R	12025061	12025113	pogo	8	2203	0.5	1.0	0.8	4.4	2255	chr3R	12022858	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025113	intergenic	not near genes	chr3R_8_12020001	chr3R_12020001	EF65_1-HE
1403	chr3R	12920138	12920176	chr3R	12925367	12925405	copia	5	5229	3.5	3.5	3.5	1.1	5267	chr3R	12920138	intron	beat-Vb +	chr3R	12922772	intron	beat-Vb +	chr3R	12925405	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	EF65_1-HE
1404	chr3R	13143006	13143061	chr3R	13148609	13148661	mdg3	8	5603	4.5	0.5	2.5	2.3	5655	chr3R	13143006	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145834	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148661	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_8_13145001	chr3R_13145001	EF65_1-HE
1416	chr3R	14021641	14021674	chr3R	14023484	14023517	S-element	4	1843	2.5	3.5	3.0	1.0	1876	chr3R	14021641	intron	rdx -	chr3R	14022579	intron	rdx -	chr3R	14023517	intron	rdx -	chr3R_4_14020001	chr3R_14020001	EF65_1-HE
1422	chr3R	14180795	14180818	chr3R	14185586	14185609	F-element	4	4791	2.0	1.0	1.5	1.6	4814	chr3R	14180795	intron	Dop1R1 -	chr3R	14183202	intron	Dop1R1 -	chr3R	14185609	intron	Dop1R1 -	chr3R_4_14180001	chr3R_14180001	EF65_1-HE
1423	chr3R	14246375	14246418	chr3R	14247897	14247908	jockey	4	1514	2.0	1.5	1.8	1.4	1533	chr3R	14246375	intergenic	not near genes	chr3R	14247142	intergenic	not near genes	chr3R	14247908	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	EF65_1-HE
1439	chr3R	15041439	15041454	chr3R	15045233	15045248	Doc	4	3794	0.5	3.5	2.0	1.3	3809	chr3R	15041439	intergenic	not near genes	chr3R	15043344	intergenic	not near genes	chr3R	15045248	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	EF65_1-HE
1440	chr3R	15079781	15079829	chr3R	15080048	15080096	pogo	8	267	0.5	2.5	1.5	3.2	315	chr3R	15079781	3` UTR	CG6966 -	chr3R	15079938	3` UTR	CG6966 -	chr3R	15080096	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	EF65_1-HE
1441	chr3R	15132046	15132067	chr3R	15135132	15135153	Juan	5	3086	7.0	5.5	6.2	0.7	3107	chr3R	15132046	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135153	3` UTR	CG6912 -	chr3R_5_15130001	chr3R_15130001	EF65_1-HE
1442	chr3R	15162526	15162564	chr3R	15167319	15167357	F-element	8	4793	0.0	0.5	0.2	6.7	4831	chr3R	15162526	intron	Gyc88E +	chr3R	15164942	intron	Gyc88E +	chr3R	15167357	intron	Gyc88E +	chr3R_8_15160001	chr3R_15160001	EF65_1-HE
1448	chr3R	15601144	15601191	chr3R	15608692	15608739	412	18	7548	6.5	3.5	5.0	3.0	7595	chr3R	15601144	intergenic	not near genes	chr3R	15604942	intergenic	not near genes	chr3R	15608739	intergenic	not near genes	chr3R_18_15600001	chr3R_15600001	EF65_1-HE
1455	chr3R	16189385	16189430	chr3R	16189811	16189857	invader4	6	427	1.5	0.5	1.0	3.0	472	chr3R	16189385	intron	sra +	chr3R	16189621	intron	sra +	chr3R	16189857	intron	sra +	chr3R_6_16185001	chr3R_16185001	EF65_1-HE
1465	chr3R	16756296	16756354	chr3R	16762513	16762554	diver	8	6215	4.0	1.0	2.5	2.3	6258	chr3R	16756296	intron	bxd -	chr3R	16759425	intron	bxd -	chr3R	16762554	intron	bxd -	chr3R_8_16755001	chr3R_16755001	EF65_1-HE
1476	chr3R	17591277	17591309	chr3R	17591739	17591771	F-element	5	462	1.0	0.5	0.8	2.8	494	chr3R	17591277	intergenic	not near genes	chr3R	17591524	intergenic	not near genes	chr3R	17591771	intergenic	not near genes	chr3R_5_17590001	chr3R_17590001	EF65_1-HE
1485	chr3R	17925834	17925858	chr3R	17927327	17927351	hobo	6	1493	7.5	2.0	4.8	1.0	1517	chr3R	17925834	intron	cpo +	chr3R	17926592	intron	cpo +	chr3R	17927351	intron	cpo +	chr3R_6_17925001	chr3R_17925001	EF65_1-HE
1498	chr3R	18606479	18606519	chr3R	18610735	18610777	F-element	5	4258	1.5	0.5	1.0	2.5	4298	chr3R	18606479	intron,intron	qin +,CG14304 -	chr3R	18608628	intron,intron	qin +,CG14304 -	chr3R	18610777	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	EF65_1-HE
1548	chr3R	21141658	21141674	chr3R	21150164	21150181	Tirant	6	8507	6.5	3.0	4.8	1.0	8523	chr3R	21141658	intron	SNF4Agamma +	chr3R	21145920	intron	SNF4Agamma +	chr3R	21150181	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	EF65_1-HE
1552	chr3R	21608990	21609027	chr3R	21611650	21611687	NOF	9	2660	3.0	2.0	2.5	2.6	2697	chr3R	21608990	intron	InR -	chr3R	21610338	intron	InR -	chr3R	21611687	intron	InR -	chr3R_9_21610001	chr3R_21610001	EF65_1-HE
1556	chr3R	21761097	21761153	chr3R	21768515	21768565	mdg1	13	7416	3.0	1.5	2.2	4.1	7468	chr3R	21761097	exon	CG42335 +	chr3R	21764831	intron	CG42335 +	chr3R	21768565	exon	CG42335 +	chr3R_13_21760001	chr3R_21760001	EF65_1-HE
1565	chr3R	22234657	22234713	chr3R	22236001	22236058	pogo	5	1344	0.0	1.5	0.8	2.8	1401	chr3R	22234657	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236058	intron	SKIP +	chr3R_5_22235001	chr3R_22235001	EF65_1-HE
1570	chr3R	22450539	22450567	chr3R	22453205	22453233	NOF	6	2666	2.5	6.0	4.2	1.2	2694	chr3R	22450539	intron	CG34376 +	chr3R	22451886	intron	CG34376 +	chr3R	22453233	intron	CG34376 +	chr3R_6_22450001	chr3R_22450001	EF65_1-HE
1592	chr3R	23684671	23684723	chr3R	23685183	23685235	roo	9	512	3.5	4.0	3.8	1.9	564	chr3R	23684671	exon	CG18754 +	chr3R	23684953	intron	CG18754 +	chr3R	23685235	exon	CG18754 +	chr3R_9_23680001	chr3R_23680001	EF65_1-HE
1600	chr3R	24072061	24072108	chr3R	24072525	24072572	jockey	19	464	11.0	7.0	9.0	1.9	511	chr3R	24072061	intron	4EHP -	chr3R	24072316	intron	4EHP -	chr3R	24072572	intron	4EHP -	chr3R_19_24070001	chr3R_24070001	EF65_1-HE
1604	chr3R	24207194	24207217	chr3R	24212296	24212319	flea	6	5102	6.5	1.5	4.0	1.2	5125	chr3R	24207194	intron	twin -	chr3R	24209756	intron	twin -	chr3R	24212319	intron	twin -	chr3R_6_24205001	chr3R_24205001	EF65_1-HE
1608	chr3R	24493256	24493300	chr3R	24493511	24493548	BS	6	252	2.5	2.0	2.2	1.9	292	chr3R	24493256	intergenic	not near genes	chr3R	24493402	intergenic	not near genes	chr3R	24493548	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	EF65_1-HE
1619	chr3R	25324364	25324390	chr3R	25328955	25328981	Doc	10	4591	6.5	7.5	7.0	1.2	4617	chr3R	25324364	exon	CHKov1 -	chr3R	25326672	intron	CHKov1 -	chr3R	25328981	exon	CHKov1 -	chr3R_10_25325001	chr3R_25325001	EF65_1-HE
1629	chr3R	25832707	25832716	chr3R	25841910	25841924	roo	4	9207	5.0	11.5	8.2	0.4	9217	chr3R	25832707	exon	alpha4GT2 +	chr3R	25837316	intron	alpha4GT2 +	chr3R	25841924	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	EF65_1-HE
1640	chr3R	26376301	26376358	chr3R	26385487	26385504	roo	10	9182	1.0	0.0	0.5	6.7	9203	chr3R	26376301	intergenic	not near genes	chr3R	26380902	intergenic	not near genes	chr3R	26385504	intergenic	not near genes	chr3R_10_26380001	chr3R_26380001	EF65_1-HE
1643	chr3R	26558307	26558356	chr3R	26565645	26565694	Stalker4	11	7338	1.5	5.0	3.2	2.6	7387	chr3R	26558307	intron	scrib +	chr3R	26562000	intron	scrib +	chr3R	26565694	intron	scrib +	chr3R_11_26560001	chr3R_26560001	EF65_1-HE
1651	chr3R	26810537	26810559	chr3R	26811048	26811070	roo	5	511	1.5	2.0	1.8	1.8	533	chr3R	26810537	intron	Tl +	chr3R	26810804	intron	Tl +	chr3R	26811070	intron	Tl +	chr3R_5_26810001	chr3R_26810001	EF65_1-HE
1659	chr3R	27140487	27140545	chr3R	27148123	27148181	412	16	7636	10.0	7.0	8.5	1.7	7694	chr3R	27140487	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148181	intron	CG6051 -	chr3R_16_27140001	chr3R_27140001	EF65_1-HE
1660	chr3R	27140017	27140063	chr3R	27148398	27148444	412	8	8381	17.5	17.5	17.5	0.4	8427	chr3R	27140017	intron	CG6051 -	chr3R	27144230	intron	CG6051 -	chr3R	27148444	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	EF65_1-HE
1663	chr3R	27342767	27342806	chr3R	27351374	27351413	Tirant	7	8607	3.0	2.0	2.5	2.0	8646	chr3R	27342767	intron	CG42534 +	chr3R	27347090	intron	CG42534 +	chr3R	27351413	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	EF65_1-HE
1672	chr3R	27791629	27791644	chr3R	27794794	27794810	Rt1c	7	3162	9.0	5.5	7.2	0.9	3181	chr3R	27791629	intron	CG34353 -	chr3R	27793220	intron	CG34353 -	chr3R	27794810	intron	CG34353 -	chr3R_7_27790001	chr3R_27790001	EF65_1-HE
1675	chr3R	27856741	27856788	chr3R	27858250	27858283	hopper2	17	1508	3.5	4.5	4.0	3.4	1542	chr3R	27856741	intron	CG34353 -	chr3R	27857512	intron	CG34353 -	chr3R	27858283	intron	CG34353 -	chr3R_17_27855001	chr3R_27855001	EF65_1-HE
1676	chr3R	27862934	27862976	chr3R	27868265	27868305	Transpac	7	5330	3.5	1.0	2.2	2.2	5371	chr3R	27862934	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868305	intron	CG34353 -	chr3R_7_27865001	chr3R_27865001	EF65_1-HE
1681	chr3R	28068470	28068524	chr3R	28073938	28073992	I-element	8	5468	1.0	1.0	1.0	4.0	5522	chr3R	28068470	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28073992	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	EF65_1-HE
1684	chr3R	28173642	28173702	chr3R	28181098	28181158	mdg1	8	7456	1.5	1.5	1.5	3.2	7516	chr3R	28173642	intron	CG34354 +	chr3R	28177400	intron	CG34354 +	chr3R	28181158	intron	CG34354 +	chr3R_8_28175001	chr3R_28175001	EF65_1-HE
1687	chr3R	28253321	28253361	chr3R	28255857	28255897	jockey	9	2535	4.5	5.0	4.8	1.6	2576	chr3R	28253321	intergenic	not near genes	chr3R	28254609	intergenic	not near genes	chr3R	28255897	intergenic	not near genes	chr3R_9_28250001	chr3R_28250001	EF65_1-HE
1704	chr3R	29079386	29079409	chr3R	29080784	29080807	NOF	5	1398	0.0	6.5	3.2	1.2	1421	chr3R	29079386	intron	CG11873 +	chr3R	29080096	intron	CG11873 +	chr3R	29080807	intron	CG11873 +	chr3R_5_29080001	chr3R_29080001	EF65_1-HE
1710	chr3R	29406616	29406643	chr3R	29407928	29407955	jockey	4	1312	4.5	4.5	4.5	0.7	1339	chr3R	29406616	intron	Ptp99A +	chr3R	29407286	intron	Ptp99A +	chr3R	29407955	intron	Ptp99A +	chr3R_4_29405001	chr3R_29405001	EF65_1-HE
1727	chr3R	29882011	29882050	chr3R	29891193	29891233	roo	5	9183	4.5	3.5	4.0	1.0	9222	chr3R	29882011	intron	CG31038 +	chr3R	29886622	intron	CG31038 +	chr3R	29891233	intron	CG31038 +	chr3R_5_29885001	chr3R_29885001	EF65_1-HE
1730	chr3R	30084839	30084870	chr3R	30086332	30086363	hobo	7	1493	3.0	4.0	3.5	1.6	1524	chr3R	30084839	intron	sima +	chr3R	30085601	intron	sima +	chr3R	30086363	intron	sima +	chr3R_7_30085001	chr3R_30085001	EF65_1-HE
1734	chr3R	30238735	30238752	chr3R	30239924	30239941	1360	5	1189	3.0	0.5	1.8	1.8	1206	chr3R	30238735	intergenic	not near genes	chr3R	30239338	intergenic	not near genes	chr3R	30239941	intergenic	not near genes	chr3R_5_30235001	chr3R_30235001	EF65_1-HE
1743	chr3R	30480447	30480487	chr3R	30482941	30482981	jockey	8	2494	4.5	1.0	2.8	2.1	2534	chr3R	30480447	intron	PH4alphaEFB +	chr3R	30481714	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_8_30480001	chr3R_30480001	EF65_1-HE
1749	chr3R	30679493	30679552	chr3R	30686988	30687047	blood	10	7494	1.0	3.0	2.0	3.3	7554	chr3R	30679493	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687047	intergenic	not near genes	chr3R_10_30680001	chr3R_30680001	EF65_1-HE
1751	chr3R	30818792	30818820	chr3R	30820383	30820411	1360	5	1591	0.0	1.0	0.5	3.3	1619	chr3R	30818792	intron	cindr +	chr3R	30819602	intron	cindr +	chr3R	30820411	intron	cindr +	chr3R_5_30815001	chr3R_30815001	EF65_1-HE
1762	chr3R	31279360	31279402	chr3R	31285577	31285619	diver	9	6217	1.5	4.5	3.0	2.2	6259	chr3R	31279360	intergenic	not near genes	chr3R	31282490	intergenic	not near genes	chr3R	31285619	intergenic	not near genes	chr3R_9_31280001	chr3R_31280001	EF65_1-HE
1766	chr3R	31691504	31691549	chr3R	31696296	31696341	Doc	12	4791	5.0	1.5	3.2	2.9	4837	chr3R	31691504	intergenic	not near genes	chr3R	31693922	intergenic	not near genes	chr3R	31696341	intergenic	not near genes	chr3R_12_31690001	chr3R_31690001	EF65_1-HE
1774	chr4	671581	671629	chr4	680190	680238	Tirant	12	8609	3.5	1.5	2.5	3.4	8657	chr4	671581	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680238	intron	CG11360 +	chr4_12_675001	chr4_675001	EF65_1-HE
1776	chrX	295830	295877	chrX	303476	303523	412	9	7646	1.5	3.0	2.2	2.8	7693	chrX	295830	intron	CG3777 +	chrX	299676	intron	CG3777 +	chrX	303523	intron	CG3777 +	chrX_9_295001	chrX_295001	EF65_1-HE
1777	chrX	318469	318487	chrX	323581	323599	flea	4	5112	0.5	5.0	2.8	1.1	5130	chrX	318469	intron,intron	CG3777 +,CG32816 -	chrX	321034	intron,intron	CG3777 +,CG32816 -	chrX	323599	intron,intron	CG3777 +,CG32816 -	chrX_4_320001	chrX_320001	EF65_1-HE
1783	chrX	551401	551449	chrX	558989	559037	412	23	7588	4.5	8.0	6.2	3.2	7636	chrX	551401	intron	Appl +	chrX	555219	intron	Appl +	chrX	559037	intron	Appl +	chrX_23_555001	chrX_555001	EF65_1-HE
1791	chrX	827581	827627	chrX	835399	835439	roo	8	7813	2.0	3.0	2.5	2.3	7858	chrX	827581	intron	CG43867 -	chrX	831510	intron	CG43867 -	chrX	835439	intron	CG43867 -	chrX_8_830001	chrX_830001	EF65_1-HE
1793	chrX	906685	906732	chrX	908500	908536	S-element	14	1814	4.0	4.0	4.0	2.8	1851	chrX	906685	intron	CG43867 -	chrX	907610	intron	CG43867 -	chrX	908536	intron	CG43867 -	chrX_14_905001	chrX_905001	EF65_1-HE
1801	chrX	1357764	1357803	chrX	1367960	1367999	Doc	7	10196	5.0	3.0	4.0	1.4	10235	chrX	1357764	intergenic	png -	chrX	1362882	intergenic	not near genes	chrX	1367999	intergenic	not near genes	chrX_7_1360001	chrX_1360001	EF65_1-HE
1809	chrX	1627964	1627985	chrX	1635458	1635461	gtwin	13	7492	17.5	12.5	15.0	0.8	7497	chrX	1627964	intron,intron	Mur2B -,br +	chrX	1631712	intron,intron	Mur2B -,br +	chrX	1635461	intron,intron	Mur2B -,br +	chrX_13_1630001	chrX_1630001	EF65_1-HE
1812	chrX	1954872	1954916	chrX	1962838	1962882	Stalker2	8	7966	1.0	5.0	3.0	2.0	8010	chrX	1954872	intron	Hr4 +	chrX	1958877	intron	Hr4 +	chrX	1962882	intron	Hr4 +	chrX_8_1955001	chrX_1955001	EF65_1-HE
1818	chrX	2399812	2399871	chrX	2408191	2408238	roo	8	8374	3.0	0.0	1.5	3.2	8426	chrX	2399812	intergenic	not near genes	chrX	2404025	intergenic	not near genes	chrX	2408238	intergenic	not near genes	chrX_8_2400001	chrX_2400001	EF65_1-HE
1822	chrX	2664354	2664402	chrX	2665536	2665590	1360	7	1183	0.0	0.0	0.0	7.0	1236	chrX	2664354	intron	sgg +	chrX	2664972	intron	sgg +	chrX	2665590	intron	sgg +	chrX_7_2660001	chrX_2660001	EF65_1-HE
1824	chrX	2844884	2844931	chrX	2852320	2852367	mdg1	14	7436	4.5	6.5	5.5	2.2	7483	chrX	2844884	intron	kirre +	chrX	2848626	intron	kirre +	chrX	2852367	intron	kirre +	chrX_14_2845001	chrX_2845001	EF65_1-HE
1836	chrX	3493077	3493117	chrX	3502261	3502302	roo	5	9185	2.5	3.0	2.8	1.3	9225	chrX	3493077	intron,intron	CR44999 +,Gas8 -	chrX	3497690	intron,intron	CR44999 +,Gas8 -	chrX	3502302	intron,intron	CR44999 +,Gas8 -	chrX_5_3495001	chrX_3495001	EF65_1-HE
1839	chrX	3597524	3597555	chrX	3619720	3619751	roo	12	22196	10.5	2.0	6.2	1.7	22227	chrX	3597524	intron	AstA-R1 +	chrX	3608638	intron	AstA-R1 +	chrX	3619751	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	EF65_1-HE
1847	chrX	4157867	4157922	chrX	4164928	4164983	297	10	7061	2.0	3.5	2.8	2.6	7116	chrX	4157867	intron	Fas2 -	chrX	4161425	intron	Fas2 -	chrX	4164983	intron	Fas2 -	chrX_10_4160001	chrX_4160001	EF65_1-HE
1862	chrX	4827947	4827997	chrX	4835342	4835394	Stalker4	26	7395	3.5	5.0	4.2	5.0	7447	chrX	4827947	intergenic	not near genes	chrX	4831670	intergenic	not near genes	chrX	4835394	intergenic	not near genes	chrX_26_4830001	chrX_4830001	EF65_1-HE
1868	chrX	5338716	5338730	chrX	5339963	5340009	jockey	5	1271	1.5	4.0	2.8	1.3	1293	chrX	5338716	intergenic	not near genes	chrX	5339362	intergenic	not near genes	chrX	5340009	intergenic	SK +	chrX_5_5335001	chrX_5335001	EF65_1-HE
1879	chrX	5883796	5883833	chrX	5884063	5884100	pogo	5	267	1.0	1.0	1.0	2.5	304	chrX	5883796	intron	CR45668 -	chrX	5883948	intron	CR45668 -	chrX	5884100	intron	CR45668 -	chrX_5_5880001	chrX_5880001	EF65_1-HE
1883	chrX	6171570	6171605	chrX	6179028	6179064	Quasimodo	4	7459	2.5	6.5	4.5	0.7	7494	chrX	6171570	intron	Ca-alpha1T -	chrX	6175317	intron	Ca-alpha1T -	chrX	6179064	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	EF65_1-HE
1887	chrX	6335186	6335241	chrX	6337724	6337777	Tirant	10	2534	0.5	1.5	1.0	5.0	2591	chrX	6335186	intergenic	not near genes	chrX	6336482	intergenic	not near genes	chrX	6337777	5` UTR	CG3842 +	chrX_10_6335001	chrX_6335001	EF65_1-HE
1889	chrX	6429977	6429994	chrX	6435478	6435495	Rt1c	11	5500	14.0	14.5	14.2	0.7	5518	chrX	6429977	intron	CG42340 -	chrX	6432736	intron	CG42340 -	chrX	6435495	intron	CG42340 -	chrX_11_6430001	chrX_6430001	EF65_1-HE
1895	chrX	6562802	6562849	chrX	6571310	6571355	Tirant	18	8507	3.0	7.0	5.0	3.0	8553	chrX	6562802	intron	CG34417 +	chrX	6567078	intron	CG34417 +	chrX	6571355	intron	CG34417 +	chrX_18_6565001	chrX_6565001	EF65_1-HE
1900	chrX	7023579	7023620	chrX	7030995	7031036	Tabor	9	7416	2.5	1.0	1.8	3.2	7457	chrX	7023579	intron	CG12541 -	chrX	7027308	intron	CG12541 -	chrX	7031036	intron	CG12541 -	chrX_9_7025001	chrX_7025001	EF65_1-HE
1904	chrX	7125218	7125240	chrX	7134403	7134425	roo	6	9185	3.5	0.0	1.8	2.1	9207	chrX	7125218	intergenic	not near genes	chrX	7129822	intergenic	not near genes	chrX	7134425	intergenic	not near genes	chrX_6_7125001	chrX_7125001	EF65_1-HE
1913	chrX	7702895	7702936	chrX	7703360	7703387	jockey	12	464	5.5	0.0	2.8	3.2	492	chrX	7702895	intron	CHES-1-like -	chrX	7703141	intron	CHES-1-like -	chrX	7703387	intron	CHES-1-like -	chrX_12_7700001	chrX_7700001	EF65_1-HE
1916	chrX	7845701	7845739	chrX	7847218	7847256	hopper2	7	1517	6.5	0.0	3.2	1.7	1555	chrX	7845701	intergenic	not near genes	chrX	7846478	intergenic	not near genes	chrX	7847256	intergenic	not near genes	chrX_7_7845001	chrX_7845001	EF65_1-HE
1919	chrX	8031427	8031458	chrX	8035762	8035793	Juan	5	4335	3.0	4.0	3.5	1.1	4366	chrX	8031427	intergenic	not near genes	chrX	8033610	intergenic	not near genes	chrX	8035793	3` UTR	CG2233 -	chrX_5_8030001	chrX_8030001	EF65_1-HE
1924	chrX	8364809	8364855	chrX	8365239	8365285	BS	11	430	3.5	2.0	2.8	2.9	476	chrX	8364809	intron	nAChRalpha3 -	chrX	8365047	intron	nAChRalpha3 -	chrX	8365285	intron	nAChRalpha3 -	chrX_11_8365001	chrX_8365001	EF65_1-HE
1941	chrX	8922304	8922359	chrX	8922764	8922819	jockey	26	460	3.5	3.5	3.5	5.8	515	chrX	8922304	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922819	intron	rdgA +	chrX_26_8920001	chrX_8920001	EF65_1-HE
1948	chrX	9575771	9575812	chrX	9576121	9576162	mdg3	11	349	4.0	1.5	2.8	2.9	391	chrX	9575771	intron,exon	CG32699 -,CG42395 -	chrX	9575966	intron,intron	CG32699 -,CG42395 -	chrX	9576162	intron,5` UTR	CG32699 -,CG42395 -	chrX_11_9575001	chrX_9575001	EF65_1-HE
1957	chrX	10138214	10138239	chrX	10145744	10145769	412	9	7530	4.0	1.0	2.5	2.6	7555	chrX	10138214	intron,intron	RhoU +,CR44894 -	chrX	10141992	intron,intron	RhoU +,CR44894 -	chrX	10145769	intron,intron	RhoU +,CR44894 -	chrX_9_10140001	chrX_10140001	EF65_1-HE
1970	chrX	10550829	10550883	chrX	10552322	10552367	hobo	8	1491	2.5	3.0	2.8	2.1	1538	chrX	10550829	intron	spri -	chrX	10551598	intron	spri -	chrX	10552367	intron	spri -	chrX_8_10550001	chrX_10550001	EF65_1-HE
1971	chrX	10686028	10686081	chrX	10691191	10691244	roo	6	5163	2.0	1.0	1.5	2.4	5216	chrX	10686028	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691244	intron	X11Lbeta +	chrX_6_10685001	chrX_10685001	EF65_1-HE
1974	chrX	10772649	10772698	chrX	10772758	10772807	Tirant	9	109	2.0	2.5	2.2	2.8	158	chrX	10772649	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772807	intron	CG15211 +	chrX_9_10770001	chrX_10770001	EF65_1-HE
1983	chrX	11268537	11268594	chrX	11270056	11270095	hopper2	10	1511	2.5	0.0	1.2	4.5	1558	chrX	11268537	intron	CG44422 -	chrX	11269316	intron	CG44422 -	chrX	11270095	intron	CG44422 -	chrX_10_11265001	chrX_11265001	EF65_1-HE
1988	chrX	11571445	11571479	chrX	11571712	11571746	pogo	7	267	2.5	4.5	3.5	1.6	301	chrX	11571445	3` UTR	Kmn1 -	chrX	11571596	3` UTR	Kmn1 -	chrX	11571746	3` UTR	Kmn1 -	chrX_7_11570001	chrX_11570001	EF65_1-HE
1989	chrX	11633391	11633442	chrX	11640471	11640526	297	11	7084	2.5	2.5	2.5	3.1	7135	chrX	11633391	intron	Ptp10D +	chrX	11636958	intron	Ptp10D +	chrX	11640526	intron	Ptp10D +	chrX_11_11635001	chrX_11635001	EF65_1-HE
1994	chrX	12168112	12168152	chrX	12173580	12173620	I-element	12	5468	2.5	3.5	3.0	3.0	5508	chrX	12168112	intron	Ten-a +	chrX	12170866	intron	Ten-a +	chrX	12173620	intron	Ten-a +	chrX_12_12170001	chrX_12170001	EF65_1-HE
1996	chrX	12301947	12301960	chrX	12303279	12303292	X-element	4	1332	5.0	0.0	2.5	1.1	1345	chrX	12301947	intron	Ten-a +	chrX	12302620	intron	Ten-a +	chrX	12303292	intron	Ten-a +	chrX_4_12300001	chrX_12300001	EF65_1-HE
2010	chrX	12930582	12930602	chrX	12937724	12937744	HMS-Beagle	4	7142	0.5	1.0	0.8	2.2	7162	chrX	12930582	intron	fne +	chrX	12934163	intron	fne +	chrX	12937744	intron	fne +	chrX_4_12930001	chrX_12930001	EF65_1-HE
2032	chrX	14105006	14105031	chrX	14114183	14114208	roo	9	9177	4.5	2.5	3.5	2.0	9202	chrX	14105006	intergenic	not near genes	chrX	14109607	intergenic	not near genes	chrX	14114208	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	EF65_1-HE
2043	chrX	14636439	14636475	chrX	14641906	14641942	I-element	8	5464	0.5	2.5	1.5	3.2	5503	chrX	14636439	intron	NetA -	chrX	14639190	intron	NetA -	chrX	14641942	intron	NetA -	chrX_8_14635001	chrX_14635001	EF65_1-HE
2047	chrX	14778031	14778045	chrX	14782854	14782868	Doc	4	4823	2.5	5.0	3.8	0.8	4837	chrX	14778031	intergenic	CG5347 +	chrX	14780450	intergenic	not near genes	chrX	14782868	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	EF65_1-HE
2051	chrX	14818737	14818785	chrX	14823967	14824015	copia	10	5230	3.0	2.0	2.5	2.9	5278	chrX	14818737	intron	rut -	chrX	14821376	intron	rut -	chrX	14824015	intron	rut -	chrX_10_14820001	chrX_14820001	EF65_1-HE
2061	chrX	15273683	15273735	chrX	15274876	15274928	1360	18	1192	7.0	3.5	5.2	2.9	1245	chrX	15273683	intergenic	not near genes	chrX	15274306	intergenic	not near genes	chrX	15274928	intergenic	not near genes	chrX_18_15270001	chrX_15270001	EF65_1-HE
2064	chrX	15413029	15413075	chrX	15417357	15417403	Juan	20	4327	10.5	0.0	5.2	3.2	4374	chrX	15413029	intron	Cngl -	chrX	15415216	intron	Cngl -	chrX	15417403	intron	Cngl -	chrX_20_15415001	chrX_15415001	EF65_1-HE
2065	chrX	15421898	15421944	chrX	15423435	15423481	pogo	14	1537	2.5	2.5	2.5	4.0	1583	chrX	15421898	intron	Cngl -	chrX	15422690	intron	Cngl -	chrX	15423481	intron	Cngl -	chrX_14_15420001	chrX_15420001	EF65_1-HE
2080	chrX	16492620	16492669	chrX	16498223	16498273	mdg3	12	5604	3.5	4.0	3.8	2.5	5653	chrX	16492620	intron	para -	chrX	16495446	intron	para -	chrX	16498273	exon	para -	chrX_12_16495001	chrX_16495001	EF65_1-HE
2112	chrX	18194057	18194094	chrX	18194618	18194655	BS	8	560	4.5	5.0	4.8	1.4	598	chrX	18194057	intron	Frq2 +	chrX	18194356	intron	Frq2 +	chrX	18194655	intron	Frq2 +	chrX_8_18190001	chrX_18190001	EF65_1-HE
2116	chrX	18429469	18429504	chrX	18434806	18434841	Transpac	4	5337	1.5	3.5	2.5	1.1	5372	chrX	18429469	intergenic	not near genes	chrX	18432155	intergenic	not near genes	chrX	18434841	intergenic	not near genes	chrX_4_18430001	chrX_18430001	EF65_1-HE
2129	chrX	19060392	19060433	chrX	19065202	19065243	Doc	4	4810	3.5	5.0	4.2	0.8	4851	chrX	19060392	intron	CG14190 +	chrX	19062818	intron	CG14190 +	chrX	19065243	intron	CG14190 +	chrX_4_19060001	chrX_19060001	EF65_1-HE
2132	chrX	19136526	19136583	chrX	19143474	19143528	412	7	6946	0.5	3.5	2.0	2.3	7002	chrX	19136526	intergenic	not near genes	chrX	19140027	intergenic	not near genes	chrX	19143528	3` UTR	RhoGAP18B -	chrX_7_19140001	chrX_19140001	EF65_1-HE
2134	chrX	19380154	19380187	chrX	19380422	19380455	pogo	5	268	4.5	2.0	3.2	1.2	301	chrX	19380154	intron	kek5 +	chrX	19380304	intron	kek5 +	chrX	19380455	intron	kek5 +	chrX_5_19380001	chrX_19380001	EF65_1-HE
2144	chrX	19710046	19710096	chrX	19711858	19711908	S-element	8	1812	3.5	4.0	3.8	1.7	1862	chrX	19710046	intron	meso18E -	chrX	19710977	intron	meso18E -	chrX	19711908	intron	meso18E -	chrX_8_19710001	chrX_19710001	EF65_1-HE
2147	chrX	19797322	19797340	chrX	19804663	19804679	Stalker4	9	7339	9.5	7.5	8.5	0.9	7357	chrX	19797322	intergenic	not near genes	chrX	19801000	intergenic	not near genes	chrX	19804679	intergenic	not near genes	chrX_9_19800001	chrX_19800001	EF65_1-HE
2178	chrX	20940700	20940738	chrX	20942195	20942233	hobo	18	1493	4.0	0.0	2.0	6.0	1533	chrX	20940700	intergenic	not near genes	chrX	20941466	intergenic	not near genes	chrX	20942233	intergenic	not near genes	chrX_18_20940001	chrX_20940001	EF65_1-HE
2182	chrX	21086102	21086160	chrX	21087157	21087215	jockey	6	1055	3.0	2.5	2.8	1.6	1113	chrX	21086102	intergenic	not near genes	chrX	21086658	intergenic	not near genes	chrX	21087215	intergenic	not near genes	chrX_6_21085001	chrX_21085001	EF65_1-HE
2196	chrX	21458703	21458730	chrX	21464165	21464192	Ivk	5	5462	0.0	4.5	2.2	1.6	5489	chrX	21458703	intergenic	not near genes	chrX	21461448	intergenic	not near genes	chrX	21464192	intergenic	not near genes	chrX_5_21460001	chrX_21460001	EF65_1-HE
2197	chrX	21474387	21474435	chrX	21474779	21474827	1731	11	392	1.5	1.5	1.5	4.4	440	chrX	21474387	intergenic	not near genes	chrX	21474607	intergenic	not near genes	chrX	21474827	intergenic	not near genes	chrX_11_21470001	chrX_21470001	EF65_1-HE
2206	chrX	22681454	22681509	chrX	22688938	22688993	HMS-Beagle2	27	7484	8.5	4.0	6.2	3.8	7539	chrX	22681454	intron	CR44997 +	chrX	22685224	intron	CR44997 +	chrX	22688993	intron	CR44997 +	chrX_27_22685001	chrX_22685001	EF65_1-HE
2207	chrX	22697473	22697516	chrX	22701796	22701839	Juan	9	4323	6.5	4.5	5.5	1.4	4366	chrX	22697473	intron	CR44997 +	chrX	22699656	intron	CR44997 +	chrX	22701839	intron	CR44997 +	chrX_9_22695001	chrX_22695001	EF65_1-HE
2209	chrX	22771486	22771531	chrX	22774802	22774848	297	8	3317	1.5	6.5	4.0	1.6	3362	chrX	22771486	intron	CR44997 +	chrX	22773167	intron	CR44997 +	chrX	22774848	intron	CR44997 +	chrX_8_22770001	chrX_22770001	EF65_1-HE
2210	chrX	22811971	22811995	chrX	22816769	22816793	F-element	5	4798	8.0	5.0	6.5	0.7	4822	chrX	22811971	intergenic	CG12446 -	chrX	22814382	intergenic	not near genes	chrX	22816793	intergenic	not near genes	chrX_5_22810001	chrX_22810001	EF65_1-HE