SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47407	47472	chr2L	52583	52648	jockey	18	5174	21.5	21.5	21.5	0.8	5241	chr2L	47407	intron	Cda5 -	chr2L	50028	intron	Cda5 -	chr2L	52648	intron	Cda5 -	chr2L_18_50001	chr2L_50001	CK2_1-HE
8	chr2L	347830	347906	chr2L	355401	355477	blood	14	7571	5.5	3.5	4.5	2.5	7647	chr2L	347830	3` UTR	Plc21C +	chr2L	351654	intron	Plc21C +	chr2L	355477	3` UTR	Plc21C +	chr2L_14_350001	chr2L_350001	CK2_1-HE
17	chr2L	770406	770460	chr2L	772255	772312	Bari1	14	1849	11.5	7.0	9.2	1.4	1906	chr2L	770406	intergenic	not near genes	chr2L	771359	intergenic	not near genes	chr2L	772312	intergenic	CR44614 +	chr2L_14_770001	chr2L_770001	CK2_1-HE
23	chr2L	976815	976906	chr2L	984522	984613	roo	24	7707	4.0	5.5	4.8	4.1	7798	chr2L	976815	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984613	intergenic	not near genes	chr2L_24_980001	chr2L_980001	CK2_1-HE
29	chr2L	1220068	1220156	chr2L	1227605	1227695	blood	23	7537	14.0	5.0	9.5	2.2	7627	chr2L	1220068	intron	CG42329 +	chr2L	1223882	intron	CG42329 +	chr2L	1227695	intron	CG42329 +	chr2L_23_1220001	chr2L_1220001	CK2_1-HE
35	chr2L	1570639	1570711	chr2L	1573580	1573654	F-element	27	2942	5.0	10.5	7.8	3.1	3015	chr2L	1570639	intron	haf +	chr2L	1572146	intron	haf +	chr2L	1573654	intron	haf +	chr2L_27_1570001	chr2L_1570001	CK2_1-HE
39	chr2L	1618195	1618235	chr2L	1618596	1618611	jockey	7	393	4.5	2.0	3.2	1.7	416	chr2L	1618195	intergenic	CR44603 -	chr2L	1618403	intergenic	CR44603 -	chr2L	1618611	intergenic	CR44603 -	chr2L_7_1615001	chr2L_1615001	CK2_1-HE
45	chr2L	1678905	1678958	chr2L	1686459	1686512	blood	16	7553	2.5	10.0	6.2	2.2	7607	chr2L	1678905	intron	chinmo +	chr2L	1682708	intron	chinmo +	chr2L	1686512	intron	chinmo +	chr2L_16_1680001	chr2L_1680001	CK2_1-HE
46	chr2L	1711296	1711339	chr2L	1711691	1711734	mdg3	8	395	7.0	7.5	7.2	1.0	438	chr2L	1711296	3` UTR	mRpL48 +	chr2L	1711515	3` UTR	frtz -	chr2L	1711734	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	CK2_1-HE
47	chr2L	1711342	1711373	chr2L	1711689	1711717	mdg3	6	369	5.5	7.5	6.5	0.8	375	chr2L	1711342	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711530	3` UTR	frtz -	chr2L	1711717	3` UTR	frtz -	chr2L_6_1710001	chr2L_1710001	CK2_1-HE
59	chr2L	2100375	2100379	chr2L	2109560	2109599	roo	4	9203	14.0	10.5	12.2	0.3	9224	chr2L	2100375	intron	dpr3 -	chr2L	2104987	intron	dpr3 -	chr2L	2109599	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	CK2_1-HE
60	chr2L	2100383	2100401	chr2L	2109550	2109551	roo	9	9176	8.0	9.5	8.8	0.9	9168	chr2L	2100383	intron	dpr3 -	chr2L	2104967	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	CK2_1-HE
61	chr2L	2112070	2112126	chr2L	2119782	2119802	opus	11	7720	8.5	8.0	8.2	1.2	7732	chr2L	2112070	intergenic	not near genes	chr2L	2115936	intergenic	not near genes	chr2L	2119802	intergenic	not near genes	chr2L_11_2115001	chr2L_2115001	CK2_1-HE
73	chr2L	2294015	2294069	chr2L	2299245	2299288	copia	13	5261	6.0	4.0	5.0	2.2	5273	chr2L	2294015	intergenic	not near genes	chr2L	2296652	intergenic	not near genes	chr2L	2299288	intergenic	not near genes	chr2L_13_2295001	chr2L_2295001	CK2_1-HE
83	chr2L	2565497	2565567	chr2L	2571640	2571710	297	10	6143	1.5	5.5	3.5	2.2	6213	chr2L	2565497	exon	Cyp309a2 -	chr2L	2568604	intron	Cyp309a2 -	chr2L	2571710	exon	Cyp309a2 -	chr2L_10_2565001	chr2L_2565001	CK2_1-HE
84	chr2L	2661156	2661228	chr2L	2663047	2663074	I-element	22	1888	16.0	19.0	17.5	1.2	1918	chr2L	2661156	intergenic	not near genes	chr2L	2662115	intergenic	not near genes	chr2L	2663074	intergenic	not near genes	chr2L_22_2660001	chr2L_2660001	CK2_1-HE
92	chr2L	2933225	2933320	chr2L	2935483	2935536	pogo	29	2254	11.0	13.5	12.2	2.2	2311	chr2L	2933225	intron	lilli +	chr2L	2934380	intron	lilli +	chr2L	2935536	intron	lilli +	chr2L_29_2930001	chr2L_2930001	CK2_1-HE
95	chr2L	3072963	3073057	chr2L	3078233	3078327	copia	19	5269	7.5	3.5	5.5	2.9	5364	chr2L	3072963	intron	toc -	chr2L	3075645	intron	toc -	chr2L	3078327	intron	toc -	chr2L_19_3075001	chr2L_3075001	CK2_1-HE
105	chr2L	3251465	3251513	chr2L	3259101	3259149	springer	11	7635	0.0	23.5	11.8	0.9	7684	chr2L	3251465	intergenic	not near genes	chr2L	3255307	intergenic	not near genes	chr2L	3259149	intergenic	not near genes	chr2L_11_3255001	chr2L_3255001	CK2_1-HE
109	chr2L	3388536	3388605	chr2L	3388848	3388917	pogo	12	312	9.0	8.0	8.5	1.3	381	chr2L	3388536	intergenic	CG42460 -	chr2L	3388726	intergenic	CG42460 -	chr2L	3388917	intergenic	CG42460 -,CR44791 +	chr2L_12_3385001	chr2L_3385001	CK2_1-HE
120	chr2L	3649738	3649806	chr2L	3655012	3655077	copia	12	5274	9.0	6.0	7.5	1.4	5339	chr2L	3649738	intron	for -	chr2L	3652408	intron	for -	chr2L	3655077	intron	for -	chr2L_12_3650001	chr2L_3650001	CK2_1-HE
141	chr2L	4065988	4066012	chr2L	4068884	4068908	Juan	5	2896	16.0	8.0	12.0	0.4	2920	chr2L	4065988	intron	ed +	chr2L	4067448	intron	ed +	chr2L	4068908	intron	ed +	chr2L_5_4065001	chr2L_4065001	CK2_1-HE
142	chr2L	4066014	4066049	chr2L	4068876	4068938	Juan	6	2888	10.0	6.0	8.0	0.7	2924	chr2L	4066014	intron	ed +	chr2L	4067476	intron	ed +	chr2L	4068938	intron	ed +	chr2L_6_4065001	chr2L_4065001	CK2_1-HE
154	chr2L	4601647	4601723	chr2L	4609153	4609233	mdg1	23	7507	8.0	8.0	8.0	2.6	7586	chr2L	4601647	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609233	intron	dp -	chr2L_23_4605001	chr2L_4605001	CK2_1-HE
155	chr2L	4661776	4661842	chr2L	4669427	4669493	opus	18	7650	6.0	11.0	8.5	1.9	7717	chr2L	4661776	intergenic	not near genes	chr2L	4665634	intergenic	not near genes	chr2L	4669493	intergenic	not near genes	chr2L_18_4665001	chr2L_4665001	CK2_1-HE
161	chr2L	4918113	4918180	chr2L	4923257	4923324	jockey	8	5144	2.5	3.0	2.8	2.1	5211	chr2L	4918113	intron	hoe1 -	chr2L	4920718	intron	hoe1 -	chr2L	4923324	intron	hoe1 -	chr2L_8_4920001	chr2L_4920001	CK2_1-HE
169	chr2L	5342714	5342785	chr2L	5345165	5345236	Doc	5	2451	3.0	7.5	5.2	0.8	2522	chr2L	5342714	intergenic	CG12512 -	chr2L	5343975	intergenic	not near genes	chr2L	5345236	intergenic	not near genes	chr2L_5_5340001	chr2L_5340001	CK2_1-HE
185	chr2L	5827655	5827739	chr2L	5836734	5836818	roo	24	9079	7.0	2.5	4.8	4.1	9163	chr2L	5827655	intron	TrissinR +	chr2L	5832236	intron	TrissinR +	chr2L	5836818	intron	TrissinR +	chr2L_24_5830001	chr2L_5830001	CK2_1-HE
204	chr2L	6363093	6363100	chr2L	6366086	6366090	Burdock	4	2992	7.5	3.0	5.2	0.6	2997	chr2L	6363093	intergenic	not near genes	chr2L	6364592	intergenic	not near genes	chr2L	6366090	intergenic	not near genes	chr2L_4_6360001	chr2L_6360001	CK2_1-HE
205	chr2L	6363102	6363154	chr2L	6366079	6366136	Burdock	7	2986	4.5	2.0	3.2	1.7	3034	chr2L	6363102	intergenic	not near genes	chr2L	6364619	intergenic	not near genes	chr2L	6366136	intergenic	not near genes	chr2L_7_6360001	chr2L_6360001	CK2_1-HE
208	chr2L	6426807	6426873	chr2L	6445138	6445204	roo	13	18331	6.0	5.5	5.8	1.9	18397	chr2L	6426807	3` UTR	CG9527 -	chr2L	6436006	intron	CG9527 -	chr2L	6445204	exon	CG9527 -	chr2L_13_6435001	chr2L_6435001	CK2_1-HE
224	chr2L	6876720	6876793	chr2L	6882982	6883048	diver	27	6250	10.0	11.0	10.5	2.3	6328	chr2L	6876720	intron	Nlg2 +	chr2L	6879884	intron	Nlg2 +	chr2L	6883048	intron	Nlg2 +	chr2L_27_6875001	chr2L_6875001	CK2_1-HE
226	chr2L	6991415	6991436	chr2L	6998550	6998632	HMS-Beagle	4	7178	2.5	3.5	3.0	1.0	7217	chr2L	6991415	intron	uif -	chr2L	6995024	intron	uif -	chr2L	6998632	intron	uif -	chr2L_4_6995001	chr2L_6995001	CK2_1-HE
238	chr2L	7343282	7343344	chr2L	7350468	7350530	roo	35	7181	11.5	17.5	14.5	2.3	7248	chr2L	7343282	intron	Wnt6 +	chr2L	7346906	intron	Wnt6 +	chr2L	7350530	intron	Wnt6 +	chr2L_35_7345001	chr2L_7345001	CK2_1-HE
245	chr2L	7548052	7548077	chr2L	7550555	7550588	Burdock	5	2509	10.5	8.5	9.5	0.5	2536	chr2L	7548052	intron	RapGAP1 -	chr2L	7549320	intron	RapGAP1 -	chr2L	7550588	intron	RapGAP1 -	chr2L_5_7545001	chr2L_7545001	CK2_1-HE
246	chr2L	7579127	7579165	chr2L	7579388	7579426	BS	8	261	2.5	0.0	1.2	3.6	299	chr2L	7579127	intergenic	RapGAP1 -	chr2L	7579276	intergenic	RapGAP1 -	chr2L	7579426	intergenic	RapGAP1 -	chr2L_8_7575001	chr2L_7575001	CK2_1-HE
258	chr2L	7958989	7959058	chr2L	7960470	7960540	pogo	10	1482	5.0	3.0	4.0	2.0	1551	chr2L	7958989	intron	Snoo -	chr2L	7959764	intron	Snoo -	chr2L	7960540	intron	Snoo -	chr2L_10_7955001	chr2L_7955001	CK2_1-HE
259	chr2L	7977046	7977100	chr2L	7984092	7984142	297	12	7043	6.0	10.0	8.0	1.3	7096	chr2L	7977046	intron	Snoo -	chr2L	7980594	intron	Snoo -	chr2L	7984142	5` UTR,5` UTR	Snoo -,CG7231 +	chr2L_12_7980001	chr2L_7980001	CK2_1-HE
262	chr2L	8013600	8013647	chr2L	8023606	8023653	copia	13	10006	1.5	2.0	1.8	4.6	10053	chr2L	8013600	intron	Tg +	chr2L	8018626	intron	Tg +	chr2L	8023653	intron	Tg +	chr2L_13_8015001	chr2L_8015001	CK2_1-HE
263	chr2L	8018818	8018823	chr2L	8023673	8023678	Doc	4	4855	0.0	9.5	4.8	0.7	4860	chr2L	8018818	intron	Tg +	chr2L	8021248	intron	Tg +	chr2L	8023678	intron	Tg +	chr2L_4_8020001	chr2L_8020001	CK2_1-HE
283	chr2L	8452359	8452435	chr2L	8461601	8461677	roo	18	9241	5.5	6.5	6.0	2.6	9318	chr2L	8452359	intron	fu12 -	chr2L	8457018	intron	fu12 -	chr2L	8461677	intron	fu12 -	chr2L_18_8455001	chr2L_8455001	CK2_1-HE
289	chr2L	8723057	8723072	chr2L	8731505	8731520	Tirant	9	8448	25.0	8.0	16.5	0.5	8463	chr2L	8723057	intron	raw -	chr2L	8727288	intron	raw -	chr2L	8731520	intron	raw -	chr2L_9_8725001	chr2L_8725001	CK2_1-HE
290	chr2L	8723079	8723130	chr2L	8731504	8731578	Tirant	17	8444	14.0	8.0	11.0	1.4	8499	chr2L	8723079	intron	raw -	chr2L	8727328	intron	raw -	chr2L	8731578	intron	raw -	chr2L_17_8725001	chr2L_8725001	CK2_1-HE
297	chr2L	9000223	9000286	chr2L	9007804	9007867	roo	18	7581	9.0	8.0	8.5	1.9	7644	chr2L	9000223	intergenic	Try29F +	chr2L	9004045	intergenic	not near genes	chr2L	9007867	intergenic	not near genes	chr2L_18_9000001	chr2L_9000001	CK2_1-HE
306	chr2L	9217924	9218003	chr2L	9222782	9222849	Doc	24	4864	1.0	3.0	2.0	8.0	4925	chr2L	9217924	intron	tai +	chr2L	9220386	intron	tai +	chr2L	9222849	intron	tai +	chr2L_24_9220001	chr2L_9220001	CK2_1-HE
324	chr2L	9393431	9393516	chr2L	9396468	9396554	jockey	39	3037	4.5	10.0	7.2	4.8	3123	chr2L	9393431	intron	Shawl -	chr2L	9394992	intron	Shawl -	chr2L	9396554	intron	Shawl -	chr2L_39_9390001	chr2L_9390001	CK2_1-HE
337	chr2L	9973659	9973749	chr2L	9980850	9980939	HMS-Beagle	24	7187	4.0	9.0	6.5	3.2	7280	chr2L	9973659	intergenic	not near genes	chr2L	9977299	intergenic	not near genes	chr2L	9980939	intergenic	not near genes	chr2L_24_9975001	chr2L_9975001	CK2_1-HE
348	chr2L	10138123	10138186	chr2L	10143440	10143503	Rt1c	8	5317	6.5	9.0	7.8	0.9	5380	chr2L	10138123	intron	CG44153 -	chr2L	10140813	intron	CG44153 -	chr2L	10143503	intron	CG44153 -	chr2L_8_10140001	chr2L_10140001	CK2_1-HE
349	chr2L	10156255	10156347	chr2L	10163795	10163876	blood	18	7532	6.0	3.5	4.8	3.1	7621	chr2L	10156255	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160066	intron	CG44153 -	chr2L	10163876	intron	CG44153 -	chr2L_18_10160001	chr2L_10160001	CK2_1-HE
362	chr2L	10592785	10592863	chr2L	10600507	10600596	opus	26	7732	7.0	7.0	7.0	3.2	7811	chr2L	10592785	intron	Trim9 +	chr2L	10596690	intron	Trim9 +	chr2L	10600596	intron	Trim9 +	chr2L_26_10595001	chr2L_10595001	CK2_1-HE
372	chr2L	10862787	10862807	chr2L	10864472	10864475	Rt1c	5	1682	13.0	5.0	9.0	0.5	1688	chr2L	10862787	intron	CR43807 -	chr2L	10863631	intron	CR43807 -	chr2L	10864475	3` UTR	CR43807 -	chr2L_5_10860001	chr2L_10860001	CK2_1-HE
373	chr2L	10862810	10862839	chr2L	10864464	10864524	Rt1c	5	1672	9.5	5.0	7.2	0.6	1714	chr2L	10862810	3` UTR	CR43807 -	chr2L	10863667	intron	CR43807 -	chr2L	10864524	3` UTR	CR43807 -	chr2L_5_10860001	chr2L_10860001	CK2_1-HE
374	chr2L	10876524	10876576	chr2L	10883655	10883707	297	4	7131	6.5	3.5	5.0	0.7	7183	chr2L	10876524	intergenic	not near genes	chr2L	10880116	intergenic	not near genes	chr2L	10883707	intergenic	not near genes	chr2L_4_10880001	chr2L_10880001	CK2_1-HE
379	chr2L	10946896	10946930	chr2L	10956182	10956216	roo	12	9286	29.5	14.5	22.0	0.5	9320	chr2L	10946896	intron	dpr2 -	chr2L	10951556	intron	dpr2 -	chr2L	10956216	intron	dpr2 -	chr2L_12_10950001	chr2L_10950001	CK2_1-HE
380	chr2L	10946937	10946966	chr2L	10956199	10956229	roo	12	9272	18.0	18.0	18.0	0.6	9292	chr2L	10946937	intron	dpr2 -	chr2L	10951583	intron	dpr2 -	chr2L	10956229	intron	dpr2 -	chr2L_12_10950001	chr2L_10950001	CK2_1-HE
388	chr2L	11215093	11215104	chr2L	11218748	11218765	Doc	6	3660	0.5	8.0	4.2	1.2	3672	chr2L	11215093	intron	ab +	chr2L	11216929	intron	ab +	chr2L	11218765	intron	ab +	chr2L_6_11215001	chr2L_11215001	CK2_1-HE
392	chr2L	11315199	11315268	chr2L	11317674	11317743	G2	24	2473	6.0	6.0	6.0	3.4	2544	chr2L	11315199	intergenic	not near genes	chr2L	11316471	intergenic	not near genes	chr2L	11317743	intergenic	not near genes	chr2L_24_11315001	chr2L_11315001	CK2_1-HE
403	chr2L	11540534	11540598	chr2L	11548007	11548071	Tabor	18	7473	6.5	4.5	5.5	2.8	7537	chr2L	11540534	intergenic	not near genes	chr2L	11544302	intergenic	not near genes	chr2L	11548071	intergenic	not near genes	chr2L_18_11540001	chr2L_11540001	CK2_1-HE
405	chr2L	11563579	11563656	chr2L	11568853	11568901	copia	24	5272	9.5	6.5	8.0	2.7	5322	chr2L	11563579	intergenic	not near genes	chr2L	11566240	intergenic	not near genes	chr2L	11568901	intergenic	not near genes	chr2L_24_11565001	chr2L_11565001	CK2_1-HE
407	chr2L	11614042	11614082	chr2L	11615547	11615611	hopper2	8	1519	6.0	7.0	6.5	1.1	1569	chr2L	11614042	intron	kek2 +	chr2L	11614826	intron	kek2 +	chr2L	11615611	intron	kek2 +	chr2L_8_11610001	chr2L_11610001	CK2_1-HE
414	chr2L	11713448	11713487	chr2L	11720986	11721025	blood	13	7537	19.5	10.0	14.8	0.8	7577	chr2L	11713448	intergenic	not near genes	chr2L	11717236	intergenic	not near genes	chr2L	11721025	intergenic	CR44143 +	chr2L_13_11715001	chr2L_11715001	CK2_1-HE
415	chr2L	11713490	11713521	chr2L	11720979	11721060	blood	11	7528	8.5	9.0	8.8	1.1	7570	chr2L	11713490	intergenic	not near genes	chr2L	11717275	intergenic	not near genes	chr2L	11721060	intergenic	CR44143 +	chr2L_11_11715001	chr2L_11715001	CK2_1-HE
425	chr2L	12067277	12067344	chr2L	12074400	12074467	297	9	7123	5.0	7.5	6.2	1.2	7190	chr2L	12067277	intergenic	not near genes	chr2L	12070872	intergenic	not near genes	chr2L	12074467	intergenic	not near genes	chr2L_9_12070001	chr2L_12070001	CK2_1-HE
444	chr2L	12558258	12558344	chr2L	12565458	12565544	HMS-Beagle	15	7199	6.5	4.0	5.2	2.4	7286	chr2L	12558258	intergenic	not near genes	chr2L	12561901	intergenic	not near genes	chr2L	12565544	intergenic	not near genes	chr2L_15_12560001	chr2L_12560001	CK2_1-HE
445	chr2L	12728867	12728902	chr2L	12729178	12729213	pogo	10	310	24.5	17.0	20.8	0.5	346	chr2L	12728867	intron	MRP +	chr2L	12729040	intron	MRP +	chr2L	12729213	exon	MRP +	chr2L_10_12725001	chr2L_12725001	CK2_1-HE
446	chr2L	12728907	12728940	chr2L	12729170	12729225	pogo	13	298	15.5	13.5	14.5	0.8	318	chr2L	12728907	intron	MRP +	chr2L	12729066	intron	MRP +	chr2L	12729225	exon	MRP +	chr2L_13_12725001	chr2L_12725001	CK2_1-HE
447	chr2L	12730997	12731075	chr2L	12735835	12735913	F-element	26	4836	15.5	8.5	12.0	2.0	4916	chr2L	12730997	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735913	intron	MRP +	chr2L_26_12730001	chr2L_12730001	CK2_1-HE
448	chr2L	12739123	12739182	chr2L	12743972	12744034	Doc	15	4851	8.5	6.5	7.5	1.8	4911	chr2L	12739123	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12744034	exon	MRP +	chr2L_15_12740001	chr2L_12740001	CK2_1-HE
450	chr2L	12781746	12781795	chr2L	12789267	12789316	Quasimodo	12	7521	22.0	3.5	12.8	0.9	7570	chr2L	12781746	intergenic	not near genes	chr2L	12785531	intergenic	not near genes	chr2L	12789316	intergenic	not near genes	chr2L_12_12785001	chr2L_12785001	CK2_1-HE
451	chr2L	12791539	12791621	chr2L	12795286	12795314	F-element	35	3743	12.5	14.5	13.5	2.4	3775	chr2L	12791539	intergenic	not near genes	chr2L	12793426	intergenic	not near genes	chr2L	12795314	intergenic	not near genes	chr2L_35_12790001	chr2L_12790001	CK2_1-HE
453	chr2L	12861460	12861712	chr2L	12863177	12863244	hobo	6	1563	0.0	4.0	2.0	2.0	1784	chr2L	12861460	intergenic	not near genes	chr2L	12862352	intergenic	not near genes	chr2L	12863244	intergenic	not near genes	chr2L_6_12860001	chr2L_12860001	CK2_1-HE
454	chr2L	12893967	12893975	chr2L	12895505	12895513	hobo	4	1538	28.0	14.5	21.2	0.2	1546	chr2L	12893967	intergenic	not near genes	chr2L	12894740	intergenic	not near genes	chr2L	12895513	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	CK2_1-HE
455	chr2L	12893982	12894039	chr2L	12895500	12895556	hobo	23	1532	12.5	13.0	12.8	1.7	1574	chr2L	12893982	intergenic	not near genes	chr2L	12894769	intergenic	not near genes	chr2L	12895556	intergenic	not near genes	chr2L_23_12890001	chr2L_12890001	CK2_1-HE
457	chr2L	12933792	12933877	chr2L	12941330	12941388	blood	33	7535	9.5	7.0	8.2	3.6	7596	chr2L	12933792	intergenic	not near genes	chr2L	12937590	intergenic	not near genes	chr2L	12941388	intergenic	not near genes	chr2L_33_12935001	chr2L_12935001	CK2_1-HE
467	chr2L	13405593	13405660	chr2L	13410461	13410528	Doc	26	4867	3.0	8.5	5.8	3.8	4935	chr2L	13405593	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410528	exon	CG7110 +	chr2L_26_13405001	chr2L_13405001	CK2_1-HE
468	chr2L	13449444	13449489	chr2L	13456951	13456996	Quasimodo	10	7507	6.5	16.5	11.5	0.8	7552	chr2L	13449444	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453220	intron	CG42784 +	chr2L	13456996	intron	CG42784 +	chr2L_10_13450001	chr2L_13450001	CK2_1-HE
472	chr2L	13481395	13481457	chr2L	13482073	13482110	jockey	26	677	20.0	27.5	23.8	1.0	715	chr2L	13481395	intron	CG42784 +	chr2L	13481752	intron	CG42784 +	chr2L	13482110	intron	CG42784 +	chr2L_26_13480001	chr2L_13480001	CK2_1-HE
476	chr2L	13522259	13522275	chr2L	13527636	13527652	Transpac	5	5377	1.5	11.5	6.5	0.7	5393	chr2L	13522259	intron	B4 -	chr2L	13524956	intron	B4 -	chr2L	13527652	intron	B4 -	chr2L_5_13520001	chr2L_13520001	CK2_1-HE
482	chr2L	13761760	13761817	chr2L	13762942	13762999	Doc	17	1181	10.5	9.0	9.8	1.6	1239	chr2L	13761760	intron	TM9SF4 +	chr2L	13762380	intron	TM9SF4 +	chr2L	13762999	intron	TM9SF4 +	chr2L_17_13760001	chr2L_13760001	CK2_1-HE
485	chr2L	13853030	13853051	chr2L	13862251	13862272	roo	7	9221	18.5	12.0	15.2	0.4	9242	chr2L	13853030	intron	CenG1A +	chr2L	13857651	intron	CenG1A +	chr2L	13862272	intron	CenG1A +	chr2L_7_13855001	chr2L_13855001	CK2_1-HE
486	chr2L	13853053	13853076	chr2L	13862249	13862297	roo	12	9218	14.5	11.5	13.0	0.9	9244	chr2L	13853053	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862297	intron	CenG1A +	chr2L_12_13855001	chr2L_13855001	CK2_1-HE
487	chr2L	13853077	13853114	chr2L	13862245	13862273	roo	19	9213	8.5	10.5	9.5	1.8	9196	chr2L	13853077	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862273	intron	CenG1A +	chr2L_19_13855001	chr2L_13855001	CK2_1-HE
516	chr2L	14618848	14618885	chr2L	14619300	14619337	jockey	17	452	7.5	12.0	9.8	1.6	489	chr2L	14618848	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619092	intron	osp -	chr2L	14619337	intron	osp -	chr2L_17_14615001	chr2L_14615001	CK2_1-HE
517	chr2L	14642516	14642591	chr2L	14651750	14651825	roo	29	9232	15.0	13.0	14.0	1.9	9309	chr2L	14642516	intron	osp -	chr2L	14647170	intron	osp -	chr2L	14651825	intron	osp -	chr2L_29_14645001	chr2L_14645001	CK2_1-HE
523	chr2L	14803817	14803899	chr2L	14809091	14809173	copia	15	5274	4.0	2.5	3.2	3.6	5356	chr2L	14803817	intergenic	not near genes	chr2L	14806495	intergenic	not near genes	chr2L	14809173	intergenic	not near genes	chr2L_15_14805001	chr2L_14805001	CK2_1-HE
527	chr2L	14889889	14889979	chr2L	14890385	14890475	jockey	43	494	6.5	6.5	6.5	5.7	586	chr2L	14889889	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890475	intergenic	not near genes	chr2L_43_14890001	chr2L_14890001	CK2_1-HE
530	chr2L	14984338	14984396	chr2L	14992011	14992069	opus	23	7669	11.5	10.5	11.0	1.9	7731	chr2L	14984338	intron	mol -	chr2L	14988204	intron	mol -	chr2L	14992069	intron	mol -	chr2L_23_14985001	chr2L_14985001	CK2_1-HE
544	chr2L	15445997	15446071	chr2L	15453537	15453576	blood	16	7537	7.5	1.0	4.2	3.1	7579	chr2L	15445997	intergenic	not near genes	chr2L	15449786	intergenic	not near genes	chr2L	15453576	intergenic	not near genes	chr2L_16_15445001	chr2L_15445001	CK2_1-HE
548	chr2L	15586351	15586422	chr2L	15593473	15593545	297	22	7123	9.5	5.5	7.5	2.6	7194	chr2L	15586351	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593545	intergenic	not near genes	chr2L_22_15585001	chr2L_15585001	CK2_1-HE
555	chr2L	15826826	15826881	chr2L	15829291	15829346	Tabor	17	2465	9.5	11.5	10.5	1.5	2520	chr2L	15826826	intergenic	not near genes	chr2L	15828086	intergenic	not near genes	chr2L	15829346	intergenic	not near genes	chr2L_17_15825001	chr2L_15825001	CK2_1-HE
557	chr2L	15955967	15956037	chr2L	15957505	15957575	hobo	15	1536	9.5	6.5	8.0	1.7	1608	chr2L	15955967	intron	beat-Ib -	chr2L	15956771	intron	beat-Ib -	chr2L	15957575	intron	beat-Ib -	chr2L_15_15955001	chr2L_15955001	CK2_1-HE
567	chr2L	16120063	16120083	chr2L	16120226	16120246	INE-1	7	163	11.0	10.0	10.5	0.6	183	chr2L	16120063	intergenic	not near genes	chr2L	16120154	intergenic	not near genes	chr2L	16120246	intergenic	not near genes	chr2L_7_16120001	chr2L_16120001	CK2_1-HE
569	chr2L	16141076	16141183	chr2L	16146367	16146461	copia	26	5289	0.0	6.0	3.0	6.5	5385	chr2L	16141076	intergenic	not near genes	chr2L	16143768	intergenic	not near genes	chr2L	16146461	intergenic	not near genes	chr2L_26_16140001	chr2L_16140001	CK2_1-HE
571	chr2L	16153677	16153746	chr2L	16160802	16160871	297	30	7125	12.0	14.0	13.0	2.1	7194	chr2L	16153677	intergenic	not near genes	chr2L	16157274	intergenic	not near genes	chr2L	16160871	intergenic	not near genes	chr2L_30_16155001	chr2L_16155001	CK2_1-HE
576	chr2L	16280241	16280264	chr2L	16281479	16281506	1360	9	1241	9.0	10.5	9.8	0.8	1265	chr2L	16280241	intron	crp -	chr2L	16280874	intron	crp -	chr2L	16281506	intron	crp -	chr2L_9_16280001	chr2L_16280001	CK2_1-HE
587	chr2L	16511907	16511988	chr2L	16519100	16519180	HMS-Beagle	19	7193	4.0	8.5	6.2	2.6	7273	chr2L	16511907	intron	CG5953 -	chr2L	16515544	intron	CG5953 -	chr2L	16519180	intron	CG5953 -	chr2L_19_16515001	chr2L_16515001	CK2_1-HE
603	chr2L	16958048	16958123	chr2L	16962907	16962982	Doc	31	4858	8.5	18.5	13.5	2.1	4934	chr2L	16958048	intergenic	not near genes	chr2L	16960515	intergenic	not near genes	chr2L	16962982	intergenic	not near genes	chr2L_31_16960001	chr2L_16960001	CK2_1-HE
610	chr2L	17167503	17167582	chr2L	17167815	17167892	pogo	17	310	8.5	4.5	6.5	2.3	389	chr2L	17167503	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167892	intron,intron	CG34106 +,beat-IIIa +	chr2L_17_17165001	chr2L_17165001	CK2_1-HE
612	chr2L	17199106	17199182	chr2L	17200644	17200720	hobo	7	1538	5.5	4.0	4.8	1.2	1614	chr2L	17199106	intron	beat-IIIc -	chr2L	17199913	intron	beat-IIIc -	chr2L	17200720	intron	beat-IIIc -	chr2L_7_17195001	chr2L_17195001	CK2_1-HE
614	chr2L	17273132	17273212	chr2L	17277986	17278066	F-element	32	4854	3.5	5.5	4.5	5.8	4934	chr2L	17273132	intergenic	not near genes	chr2L	17275599	intergenic	not near genes	chr2L	17278066	intergenic	not near genes	chr2L_32_17275001	chr2L_17275001	CK2_1-HE
624	chr2L	17431946	17432040	chr2L	17432124	17432210	1360	9	177	0.0	3.5	1.8	3.2	264	chr2L	17431946	intron	Dif -	chr2L	17432078	intron	Dif -	chr2L	17432210	intron	Dif -	chr2L_9_17430001	chr2L_17430001	CK2_1-HE
629	chr2L	17687446	17687520	chr2L	17692262	17692336	F-element	34	4814	10.5	18.0	14.2	2.2	4890	chr2L	17687446	intron	CadN -	chr2L	17689891	intron	CadN -	chr2L	17692336	intron	CadN -	chr2L_34_17685001	chr2L_17685001	CK2_1-HE
631	chr2L	17727804	17727867	chr2L	17729342	17729394	hobo	28	1535	9.0	10.5	9.8	2.6	1590	chr2L	17727804	intron	CadN -	chr2L	17728599	intron	CadN -	chr2L	17729394	intron	CadN -	chr2L_28_17725001	chr2L_17725001	CK2_1-HE
638	chr2L	17819861	17819940	chr2L	17825135	17825214	copia	22	5274	6.0	10.5	8.2	2.4	5353	chr2L	17819861	intron	CadN2 -	chr2L	17822538	intron	CadN2 -	chr2L	17825214	intron	CadN2 -	chr2L_22_17820001	chr2L_17820001	CK2_1-HE
639	chr2L	17911899	17911975	chr2L	17914156	17914232	pogo	22	2252	7.0	7.0	7.0	2.8	2333	chr2L	17911899	intergenic	not near genes	chr2L	17913066	intergenic	not near genes	chr2L	17914232	intergenic	CG43271 -	chr2L_22_17910001	chr2L_17910001	CK2_1-HE
641	chr2L	17951887	17951968	chr2L	17953425	17953506	hobo	20	1538	10.0	6.0	8.0	2.2	1619	chr2L	17951887	intergenic	CR44398 -,CR44397 -	chr2L	17952696	intergenic	not near genes	chr2L	17953506	intergenic	not near genes	chr2L_20_17950001	chr2L_17950001	CK2_1-HE
642	chr2L	18051818	18051895	chr2L	18061036	18061113	roo	21	9217	12.0	8.0	10.0	1.9	9295	chr2L	18051818	intron	rdo +	chr2L	18056466	intron	rdo +	chr2L	18061113	intron	rdo +	chr2L_21_18055001	chr2L_18055001	CK2_1-HE
654	chr2L	18407971	18408056	chr2L	18412826	18412919	Doc	11	4859	5.0	0.0	2.5	3.1	4948	chr2L	18407971	intergenic	not near genes	chr2L	18410445	intergenic	not near genes	chr2L	18412919	intergenic	not near genes	chr2L_11_18410001	chr2L_18410001	CK2_1-HE
671	chr2L	19147307	19147386	chr2L	19154412	19154473	297	30	7103	16.0	9.0	12.5	2.2	7166	chr2L	19147307	intron	brat +	chr2L	19150890	intron	brat +	chr2L	19154473	intron	brat +	chr2L_30_19150001	chr2L_19150001	CK2_1-HE
676	chr2L	19344957	19345030	chr2L	19357237	19357310	blood	20	12280	10.5	6.5	8.5	2.1	12353	chr2L	19344957	intron	dnt -	chr2L	19351134	intron	dnt -	chr2L	19357310	intron	dnt -	chr2L_20_19350001	chr2L_19350001	CK2_1-HE
688	chr2L	19620032	19620064	chr2L	19621092	19621124	jockey	9	1059	28.5	10.5	19.5	0.4	1092	chr2L	19620032	intron	Lar +	chr2L	19620578	intron	Lar +	chr2L	19621124	intron	Lar +	chr2L_9_19620001	chr2L_19620001	CK2_1-HE
689	chr2L	19620065	19620113	chr2L	19621090	19621136	jockey	14	1043	19.0	9.5	14.2	0.9	1071	chr2L	19620065	intron	Lar +	chr2L	19620600	intron	Lar +	chr2L	19621136	intron	Lar +	chr2L_14_19620001	chr2L_19620001	CK2_1-HE
690	chr2L	19652513	19652530	chr2L	19674020	19674037	opus	9	21506	23.5	10.5	17.0	0.5	21524	chr2L	19652513	intron	Lar +	chr2L	19663275	intron	Lar +	chr2L	19674037	intron	Lar +	chr2L_9_19660001	chr2L_19660001	CK2_1-HE
691	chr2L	19652533	19652589	chr2L	19674018	19674096	opus	19	21506	15.0	9.5	12.2	1.4	21563	chr2L	19652533	intron	Lar +	chr2L	19663314	intron	Lar +	chr2L	19674096	intron	Lar +	chr2L_19_19660001	chr2L_19660001	CK2_1-HE
694	chr2L	19703482	19703560	chr2L	19712689	19712754	roo	45	9205	22.5	22.5	22.5	1.9	9272	chr2L	19703482	intron	Lar +	chr2L	19708118	intron	Lar +	chr2L	19712754	intron	Lar +	chr2L_45_19705001	chr2L_19705001	CK2_1-HE
697	chr2L	19737298	19737383	chr2L	19740838	19740907	1360	8	3533	4.0	5.0	4.5	1.5	3609	chr2L	19737298	intergenic	Nf-YB +	chr2L	19739102	intergenic	not near genes	chr2L	19740907	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	CK2_1-HE
698	chr2L	19762756	19762811	chr2L	19763069	19763124	pogo	14	312	11.0	5.0	8.0	1.6	368	chr2L	19762756	exon	fbp -	chr2L	19762940	intron	fbp -	chr2L	19763124	intron	fbp -	chr2L_14_19760001	chr2L_19760001	CK2_1-HE
706	chr2L	20005816	20005881	chr2L	20010963	20011021	flea	21	5146	10.0	7.5	8.8	2.1	5205	chr2L	20005816	intron	CG43861 -	chr2L	20008418	intron	CG43861 -	chr2L	20011021	intron	CG43861 -	chr2L_21_20005001	chr2L_20005001	CK2_1-HE
723	chr2L	20272066	20272130	chr2L	20282848	20282912	copia	22	10782	12.5	15.5	14.0	1.5	10846	chr2L	20272066	intergenic	not near genes	chr2L	20277489	intergenic	not near genes	chr2L	20282912	intergenic	not near genes	chr2L_22_20275001	chr2L_20275001	CK2_1-HE
725	chr2L	20303119	20303175	chr2L	20310658	20310713	blood	16	7539	5.5	7.0	6.2	2.2	7594	chr2L	20303119	intergenic	not near genes	chr2L	20306916	intergenic	not near genes	chr2L	20310713	intergenic	not near genes	chr2L_16_20305001	chr2L_20305001	CK2_1-HE
728	chr2L	20372171	20372244	chr2L	20372483	20372538	pogo	33	310	10.0	10.5	10.2	2.9	367	chr2L	20372171	intergenic	Ugt37a1 -	chr2L	20372354	intergenic	Ugt37a1 -	chr2L	20372538	exon	Ugt37a1 -	chr2L_33_20370001	chr2L_20370001	CK2_1-HE
734	chr2L	20568594	20568679	chr2L	20569054	20569140	X-element	21	459	5.5	6.0	5.8	3.1	546	chr2L	20568594	intron	CR45347 +	chr2L	20568867	intron	CR45347 +	chr2L	20569140	intron	CR45347 +	chr2L_21_20565001	chr2L_20565001	CK2_1-HE
736	chr2L	20576164	20576239	chr2L	20583703	20583778	blood	16	7537	5.0	8.5	6.8	2.1	7614	chr2L	20576164	intergenic	CR45347 +	chr2L	20579971	intergenic	not near genes	chr2L	20583778	3` UTR	CR44909 -	chr2L_16_20575001	chr2L_20575001	CK2_1-HE
747	chr2L	20835749	20835827	chr2L	20836533	20836615	Quasimodo	15	788	7.5	9.0	8.2	1.6	866	chr2L	20835749	5` UTR	Oseg5 -	chr2L	20836182	intergenic	Oseg5 -,Spn38F -	chr2L	20836615	intergenic	Spn38F -	chr2L_15_20835001	chr2L_20835001	CK2_1-HE
748	chr2L	20891465	20891542	chr2L	20896637	20896714	jockey	21	5171	6.0	4.0	5.0	3.5	5249	chr2L	20891465	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896714	intron,intron	CG43739 -,sky -	chr2L_21_20890001	chr2L_20890001	CK2_1-HE
749	chr2L	20901391	20901477	chr2L	20902626	20902712	1360	9	1234	9.0	5.5	7.2	1.1	1321	chr2L	20901391	intron,intron	CG43739 -,sky -	chr2L	20902052	intron,intron	CG43739 -,sky -	chr2L	20902712	intron,intron	CG43739 -,sky -	chr2L_9_20900001	chr2L_20900001	CK2_1-HE
753	chr2L	20976598	20976658	chr2L	20981484	20981539	X-element	34	4884	7.0	10.0	8.5	3.6	4941	chr2L	20976598	intron	CG42238 -	chr2L	20979068	intron	CG42238 -	chr2L	20981539	intron	CG42238 -	chr2L_34_20975001	chr2L_20975001	CK2_1-HE
755	chr2L	21020222	21020297	chr2L	21023968	21024039	NOF	21	3745	5.5	3.5	4.5	3.8	3817	chr2L	21020222	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21024039	intron	CG42238 -	chr2L_21_21020001	chr2L_21020001	CK2_1-HE
756	chr2L	21041077	21041151	chr2L	21049409	21049482	Tirant	24	8331	7.5	4.5	6.0	3.4	8405	chr2L	21041077	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049482	intron	CG42238 -	chr2L_24_21045001	chr2L_21045001	CK2_1-HE
768	chr2L	21347506	21347535	chr2L	21355048	21355077	blood	7	7542	3.5	0.0	1.8	2.5	7571	chr2L	21347506	intron	Tsp39D +	chr2L	21351292	intron	Tsp39D +	chr2L	21355077	intron	Tsp39D +	chr2L_7_21350001	chr2L_21350001	CK2_1-HE
769	chr2L	21596993	21597055	chr2L	21604790	21604857	roo	9	7811	8.0	11.0	9.5	0.9	7864	chr2L	21596993	intergenic	not near genes	chr2L	21600925	intergenic	not near genes	chr2L	21604857	intergenic	not near genes	chr2L_9_21600001	chr2L_21600001	CK2_1-HE
776	chr2L	21981627	21981693	chr2L	21990863	21990929	roo	16	9235	10.5	12.0	11.2	1.3	9302	chr2L	21981627	exon	CG2528 -	chr2L	21986278	intron	CG2528 -	chr2L	21990929	exon	CG2528 -	chr2L_16_21985001	chr2L_21985001	CK2_1-HE
785	chr2L	22776359	22776439	chr2L	22778219	22778299	S-element	9	1860	0.5	3.0	1.8	3.2	1940	chr2L	22776359	intergenic	not near genes	chr2L	22777329	intergenic	not near genes	chr2L	22778299	intergenic	not near genes	chr2L_9_22775001	chr2L_22775001	CK2_1-HE
786	chr2R	998431	998435	chr2R	998701	998705	gypsy6	6	270	24.5	13.0	18.8	0.3	274	chr2R	998431	intergenic	not near genes	chr2R	998568	intergenic	not near genes	chr2R	998705	intergenic	not near genes	chr2R_6_995001	chr2R_995001	CK2_1-HE
791	chr2R	2498936	2498947	chr2R	2508154	2508165	roo	4	9218	6.0	5.0	5.5	0.6	9229	chr2R	2498936	intron	MFS17 -	chr2R	2503550	intron	MFS17 -	chr2R	2508165	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	CK2_1-HE
793	chr2R	3144044	3144107	chr2R	3393393	3393455	Doc	10	249349	18.5	15.5	17.0	0.6	249411	chr2R	3144044	intron	CG42596 +	chr2R	3268750	intergenic	not near genes	chr2R	3393455	intergenic	not near genes	chr2R_10_3265001	chr2R_3265001	CK2_1-HE
798	chr2R	1365713	1365717	chr2R	3915288	3915292	297	4	2549575	27.5	23.0	25.2	0.2	2549579	chr2R	1365713	intron	l(2)41Ab +	chr2R	2640502	intergenic	not near genes	chr2R	3915292	intron	uex -	chr2R_4_2640001	chr2R_2640001	CK2_1-HE
801	chr2R	4622915	4622973	chr2R	4624145	4624202	1360	8	1230	2.0	3.0	2.5	2.3	1287	chr2R	4622915	intergenic	CR44101 -	chr2R	4623558	intergenic	not near genes	chr2R	4624202	intergenic	not near genes	chr2R_8_4620001	chr2R_4620001	CK2_1-HE
802	chr2R	4750287	4750332	chr2R	4751515	4751560	1360	6	1228	4.0	3.5	3.8	1.2	1273	chr2R	4750287	intron	conu +	chr2R	4750924	intron	conu +	chr2R	4751560	intron	conu +	chr2R_6_4750001	chr2R_4750001	CK2_1-HE
804	chr2R	4870672	4870742	chr2R	4871254	4871324	R1A1-element	19	581	5.0	7.0	6.0	2.7	652	chr2R	4870672	intergenic	not near genes	chr2R	4870998	intergenic	not near genes	chr2R	4871324	intergenic	not near genes	chr2R_19_4870001	chr2R_4870001	CK2_1-HE
805	chr2R	4940959	4940982	chr2R	5032222	5032244	1360	6	91263	16.0	10.0	13.0	0.4	91285	chr2R	4940959	intron	Ir41a +	chr2R	4986602	intron	Ir41a +	chr2R	5032244	3` UTR	CR44105 -	chr2R_6_4985001	chr2R_4985001	CK2_1-HE
811	chr2R	5417938	5418007	chr2R	5420641	5420710	Burdock	12	2702	3.5	5.5	4.5	2.2	2772	chr2R	5417938	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420710	intron	laccase2 +	chr2R_12_5415001	chr2R_5415001	CK2_1-HE
830	chr2R	5869218	5869294	chr2R	5874365	5874441	flea	26	5146	12.0	9.0	10.5	2.3	5223	chr2R	5869218	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874441	intergenic	not near genes	chr2R_26_5870001	chr2R_5870001	CK2_1-HE
834	chr2R	5902098	5902176	chr2R	5909728	5909806	17.6	12	7630	11.5	8.5	10.0	1.1	7708	chr2R	5902098	5` UTR	CG43366 +	chr2R	5905952	intron	CG43366 +	chr2R	5909806	intron	CG43366 +	chr2R_12_5905001	chr2R_5905001	CK2_1-HE
838	chr2R	6096687	6096708	chr2R	6101927	6101977	BS	8	5257	27.0	12.5	19.8	0.4	5290	chr2R	6096687	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101977	intron	EcR -	chr2R_8_6095001	chr2R_6095001	CK2_1-HE
839	chr2R	6096710	6096745	chr2R	6101919	6101965	BS	8	5244	17.0	10.5	13.8	0.5	5255	chr2R	6096710	intron	EcR -	chr2R	6099338	intron	EcR -	chr2R	6101965	intron	EcR -	chr2R_8_6095001	chr2R_6095001	CK2_1-HE
846	chr2R	6494472	6494534	chr2R	6499305	6499347	F-element	10	4828	3.5	0.5	2.0	3.3	4875	chr2R	6494472	intergenic	not near genes	chr2R	6496910	intergenic	not near genes	chr2R	6499347	intergenic	not near genes	chr2R_10_6495001	chr2R_6495001	CK2_1-HE
851	chr2R	6579736	6579789	chr2R	6584893	6584946	flea	14	5156	3.5	13.0	8.2	1.5	5210	chr2R	6579736	intron	jing +	chr2R	6582341	intron	jing +	chr2R	6584946	intron	jing +	chr2R_14_6580001	chr2R_6580001	CK2_1-HE
855	chr2R	6952111	6952160	chr2R	6959762	6959811	opus	7	7651	8.5	8.5	8.5	0.7	7700	chr2R	6952111	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955961	intron,intron	mim -,CheB42c -	chr2R	6959811	intron,intron	mim -,CheB42c -	chr2R_7_6955001	chr2R_6955001	CK2_1-HE
858	chr2R	7139843	7139866	chr2R	7141416	7141441	hopper2	8	1572	14.5	4.0	9.2	0.8	1598	chr2R	7139843	intergenic	not near genes	chr2R	7140642	intergenic	not near genes	chr2R	7141441	intergenic	not near genes	chr2R_8_7140001	chr2R_7140001	CK2_1-HE
861	chr2R	7196512	7196582	chr2R	7201358	7201428	F-element	16	4846	4.0	7.5	5.8	2.4	4916	chr2R	7196512	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201428	intron	pk +	chr2R_16_7195001	chr2R_7195001	CK2_1-HE
863	chr2R	7209844	7209874	chr2R	7217675	7217706	roo	7	7830	9.5	17.5	13.5	0.5	7862	chr2R	7209844	intron	pk +	chr2R	7213775	intron	pk +	chr2R	7217706	intron	pk +	chr2R_7_7210001	chr2R_7210001	CK2_1-HE
864	chr2R	7235767	7235843	chr2R	7240930	7241006	jockey	11	5162	3.0	7.5	5.2	1.8	5239	chr2R	7235767	intergenic	not near genes	chr2R	7238386	intergenic	not near genes	chr2R	7241006	intergenic	not near genes	chr2R_11_7235001	chr2R_7235001	CK2_1-HE
869	chr2R	7434849	7434904	chr2R	7439221	7439276	Juan	7	4372	5.0	9.0	7.0	0.9	4427	chr2R	7434849	3` UTR	so +	chr2R	7437062	intergenic	not near genes	chr2R	7439276	intergenic	not near genes	chr2R_7_7435001	chr2R_7435001	CK2_1-HE
870	chr2R	7608359	7608419	chr2R	7613633	7613691	I-element	24	5274	8.5	14.0	11.2	2.0	5332	chr2R	7608359	intron	CG1358 -	chr2R	7611025	intron	CG1358 -	chr2R	7613691	intron	CG1358 -	chr2R_24_7610001	chr2R_7610001	CK2_1-HE
875	chr2R	7815614	7815679	chr2R	7822152	7822219	Burdock	8	6539	0.0	2.5	1.2	3.6	6605	chr2R	7815614	intergenic	CG1882 +	chr2R	7818916	intergenic	not near genes	chr2R	7822219	3` UTR	cathD -	chr2R_8_7815001	chr2R_7815001	CK2_1-HE
876	chr2R	7862213	7862251	chr2R	7867370	7867408	flea	7	5155	21.0	10.5	15.8	0.4	5195	chr2R	7862213	intron	Dgk -	chr2R	7864810	intron	Dgk -	chr2R	7867408	intron	Dgk -	chr2R_7_7860001	chr2R_7860001	CK2_1-HE
877	chr2R	7869130	7869138	chr2R	7873987	7873995	Doc	6	4857	25.0	15.0	20.0	0.3	4865	chr2R	7869130	intron	Dgk -	chr2R	7871562	intron	Dgk -	chr2R	7873995	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	CK2_1-HE
878	chr2R	7869141	7869195	chr2R	7873984	7874052	Doc	25	4855	13.0	14.5	13.8	1.7	4911	chr2R	7869141	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874052	intron	Dgk -	chr2R_25_7870001	chr2R_7870001	CK2_1-HE
882	chr2R	8160876	8160933	chr2R	8161035	8161094	1360	14	156	7.0	10.5	8.8	1.4	218	chr2R	8160876	exon	CG8708 -	chr2R	8160985	intron	CG8708 -	chr2R	8161094	intron	CG8708 -	chr2R_14_8160001	chr2R_8160001	CK2_1-HE
887	chr2R	8330806	8330875	chr2R	8331363	8331432	roo	25	557	10.0	10.5	10.2	2.2	626	chr2R	8330806	intron	pdm3 +	chr2R	8331119	intron	pdm3 +	chr2R	8331432	intron	pdm3 +	chr2R_25_8330001	chr2R_8330001	CK2_1-HE
888	chr2R	8398165	8398227	chr2R	8403002	8403079	Doc	16	4849	7.0	8.0	7.5	1.9	4914	chr2R	8398165	intron	CG2121 -	chr2R	8400622	intron	CG2121 -	chr2R	8403079	intron	CG2121 -	chr2R_16_8400001	chr2R_8400001	CK2_1-HE
892	chr2R	8490545	8490559	chr2R	8492341	8492354	Rt1c	6	1796	20.5	17.5	19.0	0.3	1809	chr2R	8490545	intron	mtt -	chr2R	8491450	intron	mtt -	chr2R	8492354	intron	mtt -	chr2R_6_8490001	chr2R_8490001	CK2_1-HE
893	chr2R	8490560	8490579	chr2R	8492337	8492375	Rt1c	4	1791	15.0	17.0	16.0	0.2	1815	chr2R	8490560	intron	mtt -	chr2R	8491468	intron	mtt -	chr2R	8492375	intron	mtt -	chr2R_4_8490001	chr2R_8490001	CK2_1-HE
900	chr2R	8565990	8566062	chr2R	8567007	8567078	1360	21	1016	9.0	11.5	10.2	1.9	1088	chr2R	8565990	5` UTR	Cyp6a14 -	chr2R	8566534	5` UTR	Cyp6a14 -	chr2R	8567078	5` UTR	Cyp6a14 -	chr2R_21_8565001	chr2R_8565001	CK2_1-HE
903	chr2R	8722703	8722791	chr2R	8723015	8723034	pogo	17	295	5.5	14.0	9.8	1.6	331	chr2R	8722703	intron	CG14767 -	chr2R	8722868	intron	CG14767 -	chr2R	8723034	intron	CG14767 -	chr2R_17_8720001	chr2R_8720001	CK2_1-HE
904	chr2R	8777854	8777944	chr2R	8784129	8784219	diver	20	6275	0.0	8.5	4.2	3.8	6365	chr2R	8777854	intergenic	not near genes	chr2R	8781036	intergenic	not near genes	chr2R	8784219	intergenic	not near genes	chr2R_20_8780001	chr2R_8780001	CK2_1-HE
909	chr2R	9151245	9151315	chr2R	9157786	9157856	Burdock	14	6540	10.0	12.0	11.0	1.2	6611	chr2R	9151245	exon	CG30345 +	chr2R	9154550	intergenic	not near genes	chr2R	9157856	intergenic	CG8008 -	chr2R_14_9150001	chr2R_9150001	CK2_1-HE
910	chr2R	9212638	9212718	chr2R	9213193	9213228	roo	15	549	11.5	0.0	5.8	2.2	590	chr2R	9212638	intergenic	CR45309 +	chr2R	9212933	intergenic	CR45309 +	chr2R	9213228	5` UTR	CR45309 +	chr2R_15_9210001	chr2R_9210001	CK2_1-HE
920	chr2R	9480024	9480049	chr2R	9490626	9490651	roo	10	10602	16.0	4.5	10.2	0.9	10627	chr2R	9480024	intergenic	not near genes	chr2R	9485338	intergenic	not near genes	chr2R	9490651	intergenic	not near genes	chr2R_10_9485001	chr2R_9485001	CK2_1-HE
928	chr2R	9726555	9726628	chr2R	9734179	9734252	17.6	20	7623	10.5	11.5	11.0	1.7	7697	chr2R	9726555	intron	sqa -	chr2R	9730404	intron	sqa -	chr2R	9734252	intron	sqa -	chr2R_20_9730001	chr2R_9730001	CK2_1-HE
930	chr2R	9870983	9871059	chr2R	9871540	9871616	roo	19	557	11.0	11.0	11.0	1.6	633	chr2R	9870983	intron	cbx -	chr2R	9871300	intron	cbx -	chr2R	9871616	intron,5` UTR	cbx -,CG18446 +	chr2R_19_9870001	chr2R_9870001	CK2_1-HE
934	chr2R	9945379	9945444	chr2R	9945646	9945711	BS	19	266	7.5	7.5	7.5	2.2	332	chr2R	9945379	intron	Mef2 -	chr2R	9945545	intron	Mef2 -	chr2R	9945711	intron	Mef2 -	chr2R_19_9945001	chr2R_9945001	CK2_1-HE
937	chr2R	10005787	10005883	chr2R	10007022	10007031	1360	35	1222	10.0	15.5	12.8	2.5	1244	chr2R	10005787	intron	Pka-R2 -	chr2R	10006409	intron	Pka-R2 -	chr2R	10007031	intron	Pka-R2 -	chr2R_35_10005001	chr2R_10005001	CK2_1-HE
942	chr2R	10176820	10176900	chr2R	10186058	10186138	roo	34	9238	11.5	10.0	10.8	2.9	9318	chr2R	10176820	intron	KCNQ -	chr2R	10181479	intron	KCNQ -	chr2R	10186138	intron	KCNQ -	chr2R_34_10180001	chr2R_10180001	CK2_1-HE
969	chr2R	10585506	10585577	chr2R	10594153	10594224	Tirant	5	8647	11.5	9.5	10.5	0.4	8718	chr2R	10585506	intron	psq +	chr2R	10589865	intron	psq +	chr2R	10594224	intron	psq +	chr2R_5_10585001	chr2R_10585001	CK2_1-HE
971	chr2R	10659010	10659051	chr2R	10666696	10666737	mdg1	10	7686	0.0	9.0	4.5	1.8	7727	chr2R	10659010	intergenic	not near genes	chr2R	10662874	intergenic	not near genes	chr2R	10666737	intergenic	not near genes	chr2R_10_10660001	chr2R_10660001	CK2_1-HE
987	chr2R	10948017	10948043	chr2R	10955595	10955665	17.6	11	7616	0.5	4.5	2.5	3.1	7648	chr2R	10948017	intergenic	not near genes	chr2R	10951841	intergenic	not near genes	chr2R	10955665	intergenic	not near genes	chr2R_11_10950001	chr2R_10950001	CK2_1-HE
991	chr2R	10979600	10979675	chr2R	10980140	10980216	297	7	540	2.5	5.0	3.8	1.5	616	chr2R	10979600	intergenic	not near genes	chr2R	10979908	intergenic	not near genes	chr2R	10980216	intergenic	not near genes	chr2R_7_10975001	chr2R_10975001	CK2_1-HE
992	chr2R	11009765	11009839	chr2R	11019004	11019062	roo	24	9242	6.0	10.0	8.0	2.7	9297	chr2R	11009765	intron	luna -	chr2R	11014414	intron	luna -	chr2R	11019062	intron	luna -	chr2R_24_11010001	chr2R_11010001	CK2_1-HE
996	chr2R	11134086	11134131	chr2R	11134398	11134443	pogo	7	312	4.0	2.5	3.2	1.7	357	chr2R	11134086	intergenic	not near genes	chr2R	11134264	intergenic	not near genes	chr2R	11134443	intergenic	not near genes	chr2R_7_11130001	chr2R_11130001	CK2_1-HE
1003	chr2R	11207770	11207832	chr2R	11208015	11208095	BS	18	261	19.0	9.0	14.0	1.2	325	chr2R	11207770	intron	shn +	chr2R	11207932	intron	shn +	chr2R	11208095	intron	shn +	chr2R_18_11205001	chr2R_11205001	CK2_1-HE
1006	chr2R	11297571	11297612	chr2R	11301963	11302004	flea	12	4392	13.5	5.0	9.2	1.2	4433	chr2R	11297571	intergenic	CG42336 -	chr2R	11299788	intergenic	not near genes	chr2R	11302004	5` UTR	CG7741 +	chr2R_12_11295001	chr2R_11295001	CK2_1-HE
1008	chr2R	11415465	11415471	chr2R	11418685	11418691	opus	4	3220	16.5	10.5	13.5	0.3	3226	chr2R	11415465	intron	Drip -	chr2R	11417078	intron	Drip -	chr2R	11418691	intron	Drip -	chr2R_4_11415001	chr2R_11415001	CK2_1-HE
1009	chr2R	11415477	11415491	chr2R	11418684	11418711	opus	5	3217	14.5	10.5	12.5	0.4	3234	chr2R	11415477	intron	Drip -	chr2R	11417094	intron	Drip -	chr2R	11418711	intron	Drip -	chr2R_5_11415001	chr2R_11415001	CK2_1-HE
1010	chr2R	11415506	11415540	chr2R	11418705	11418759	opus	12	3216	7.5	13.5	10.5	1.0	3253	chr2R	11415506	intron	Drip -	chr2R	11417132	intron	Drip -	chr2R	11418759	intron	Drip -	chr2R_12_11415001	chr2R_11415001	CK2_1-HE
1013	chr2R	11472595	11472676	chr2R	11473863	11473944	pogo	23	1265	6.5	7.0	6.8	2.9	1349	chr2R	11472595	intergenic	not near genes	chr2R	11473270	intergenic	not near genes	chr2R	11473944	intergenic	not near genes	chr2R_23_11470001	chr2R_11470001	CK2_1-HE
1044	chr2R	12501640	12501716	chr2R	12503865	12503906	Rt1c	8	2225	11.0	7.5	9.2	0.8	2266	chr2R	12501640	intron	fdl -	chr2R	12502773	intron	fdl -	chr2R	12503906	intron	fdl -	chr2R_8_12500001	chr2R_12500001	CK2_1-HE
1053	chr2R	12707432	12707547	chr2R	12715883	12715972	roo	12	8449	0.0	0.0	0.0	12.0	8540	chr2R	12707432	intron	CG42663 +	chr2R	12711702	intron	CG42663 +	chr2R	12715972	intron	CG42663 +	chr2R_12_12710001	chr2R_12710001	CK2_1-HE
1059	chr2R	12789241	12789265	chr2R	12797675	12797699	roo	8	8434	14.0	9.5	11.8	0.6	8458	chr2R	12789241	intron,3` UTR	sca +,CR45137 -	chr2R	12793470	intron,intron	sca +,CR45137 -	chr2R	12797699	intron,3` UTR	sca +,CR45137 -	chr2R_8_12790001	chr2R_12790001	CK2_1-HE
1060	chr2R	12789267	12789319	chr2R	12797663	12797735	roo	20	8422	6.5	6.0	6.2	2.8	8468	chr2R	12789267	intron,3` UTR	sca +,CR45137 -	chr2R	12793501	intron,intron	sca +,CR45137 -	chr2R	12797735	intron,3` UTR	sca +,CR45137 -	chr2R_20_12790001	chr2R_12790001	CK2_1-HE
1061	chr2R	12819388	12819460	chr2R	12824536	12824608	jockey	21	5144	4.0	8.0	6.0	3.0	5220	chr2R	12819388	intergenic	not near genes	chr2R	12821998	intergenic	not near genes	chr2R	12824608	intergenic	not near genes	chr2R_21_12820001	chr2R_12820001	CK2_1-HE
1067	chr2R	13136776	13136850	chr2R	13141644	13141719	Doc	10	4866	8.5	6.5	7.5	1.2	4943	chr2R	13136776	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141719	intron	Cap-G +	chr2R_10_13135001	chr2R_13135001	CK2_1-HE
1084	chr2R	13580495	13580506	chr2R	13580871	13580926	jockey	4	409	0.0	1.5	0.8	2.2	431	chr2R	13580495	3` UTR	CG6191 -	chr2R	13580710	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580926	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	CK2_1-HE
1089	chr2R	13728065	13728138	chr2R	13735793	13735866	opus	34	7726	8.5	5.5	7.0	4.2	7801	chr2R	13728065	intron	fas +	chr2R	13731966	intron	fas +	chr2R	13735866	intron	fas +	chr2R_34_13730001	chr2R_13730001	CK2_1-HE
1094	chr2R	13905535	13905583	chr2R	13907588	13907636	Rt1a	14	2052	7.0	7.0	7.0	1.8	2101	chr2R	13905535	intron	shot -	chr2R	13906586	intron	shot -	chr2R	13907636	intron	shot -	chr2R_14_13905001	chr2R_13905001	CK2_1-HE
1106	chr2R	14394169	14394239	chr2R	14399029	14399099	Doc	6	4860	5.0	4.5	4.8	1.0	4930	chr2R	14394169	intergenic	not near genes	chr2R	14396634	intergenic	not near genes	chr2R	14399099	intergenic	not near genes	chr2R_6_14395001	chr2R_14395001	CK2_1-HE
1109	chr2R	14467235	14467317	chr2R	14476463	14476546	roo	24	9227	9.5	9.5	9.5	2.3	9311	chr2R	14467235	intergenic	not near genes	chr2R	14471890	intergenic	not near genes	chr2R	14476546	5` UTR	CR44462 +	chr2R_24_14470001	chr2R_14470001	CK2_1-HE
1110	chr2R	14497336	14497404	chr2R	14498573	14498641	1360	15	1237	7.5	15.0	11.2	1.2	1305	chr2R	14497336	intergenic	Cpsf160 -,L +	chr2R	14497988	intron	Cpsf160 -	chr2R	14498641	3` UTR	Cpsf160 -	chr2R_15_14495001	chr2R_14495001	CK2_1-HE
1126	chr2R	14889165	14889240	chr2R	14897840	14897908	Max-element	20	8668	9.0	1.0	5.0	3.3	8743	chr2R	14889165	intergenic	Cyp6a8 -	chr2R	14893536	intergenic	not near genes	chr2R	14897908	intergenic	not near genes	chr2R_20_14890001	chr2R_14890001	CK2_1-HE
1132	chr2R	15004669	15004743	chr2R	15005069	15005143	jockey	13	400	7.5	6.0	6.8	1.7	474	chr2R	15004669	intergenic	not near genes	chr2R	15004906	intergenic	not near genes	chr2R	15005143	intergenic	not near genes	chr2R_13_15000001	chr2R_15000001	CK2_1-HE
1133	chr2R	15015396	15015480	chr2R	15022884	15022975	mdg1	19	7491	6.0	9.5	7.8	2.2	7579	chr2R	15015396	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022975	intron	hbs +	chr2R_19_15015001	chr2R_15015001	CK2_1-HE
1136	chr2R	15084918	15084984	chr2R	15092038	15092103	297	15	7119	14.0	1.0	7.5	1.8	7185	chr2R	15084918	intergenic	not near genes	chr2R	15088510	intergenic	not near genes	chr2R	15092103	5` UTR	CR44457 +	chr2R_15_15085001	chr2R_15085001	CK2_1-HE
1137	chr2R	15119263	15119288	chr2R	15127815	15127840	Tirant	4	8550	30.5	11.0	20.8	0.2	8577	chr2R	15119263	intron	chn +	chr2R	15123552	intron	chn +	chr2R	15127840	intron	chn +	chr2R_4_15120001	chr2R_15120001	CK2_1-HE
1138	chr2R	15119289	15119316	chr2R	15127814	15127851	Tirant	12	8542	22.5	11.0	16.8	0.7	8562	chr2R	15119289	intron	chn +	chr2R	15123570	intron	chn +	chr2R	15127851	intron	chn +	chr2R_12_15120001	chr2R_15120001	CK2_1-HE
1147	chr2R	15340638	15340655	chr2R	15349289	15349309	Tirant	4	8653	12.5	17.0	14.8	0.3	8671	chr2R	15340638	intron	unc-5 +	chr2R	15344974	intron	unc-5 +	chr2R	15349309	intron	unc-5 +	chr2R_4_15340001	chr2R_15340001	CK2_1-HE
1170	chr2R	16061673	16061715	chr2R	16064377	16064419	Burdock	26	2703	14.5	5.0	9.8	2.4	2746	chr2R	16061673	intergenic	not near genes	chr2R	16063046	intergenic	not near genes	chr2R	16064419	intergenic	not near genes	chr2R_26_16060001	chr2R_16060001	CK2_1-HE
1183	chr2R	16539578	16539634	chr2R	16544855	16544943	copia	7	5304	7.5	0.0	3.8	1.5	5365	chr2R	16539578	intergenic	not near genes	chr2R	16542260	intergenic	not near genes	chr2R	16544943	intergenic	not near genes	chr2R_7_16540001	chr2R_16540001	CK2_1-HE
1195	chr2R	17176270	17176379	chr2R	17182547	17182640	diver	5	6267	0.5	0.5	0.5	3.3	6370	chr2R	17176270	intergenic	not near genes	chr2R	17179455	intergenic	not near genes	chr2R	17182640	intergenic	not near genes	chr2R_5_17175001	chr2R_17175001	CK2_1-HE
1196	chr2R	17236460	17236522	chr2R	17241735	17241797	copia	16	5274	4.5	8.5	6.5	2.1	5337	chr2R	17236460	intron	mbl +	chr2R	17239128	intron	mbl +	chr2R	17241797	intron	mbl +	chr2R_16_17235001	chr2R_17235001	CK2_1-HE
1205	chr2R	17485893	17485936	chr2R	17490724	17490767	F-element	9	4831	5.0	7.5	6.2	1.2	4874	chr2R	17485893	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488330	intron	NT5E-2 +	chr2R	17490767	intron	NT5E-2 +	chr2R_9_17485001	chr2R_17485001	CK2_1-HE
1214	chr2R	17783973	17784056	chr2R	17784267	17784316	pogo	41	306	18.0	15.5	16.8	2.3	343	chr2R	17783973	intergenic	mir-31a -	chr2R	17784144	intergenic	mir-31a -	chr2R	17784316	intergenic	mir-31a -	chr2R_41_17780001	chr2R_17780001	CK2_1-HE
1223	chr2R	18045614	18045677	chr2R	18046037	18046100	jockey	10	423	6.0	3.0	4.5	1.8	486	chr2R	18045614	intergenic	not near genes	chr2R	18045857	intergenic	not near genes	chr2R	18046100	intergenic	CG5767 -	chr2R_10_18045001	chr2R_18045001	CK2_1-HE
1224	chr2R	18111622	18111700	chr2R	18115561	18115611	F-element	16	3937	4.0	5.5	4.8	2.8	3989	chr2R	18111622	intergenic	not near genes	chr2R	18113616	intergenic	not near genes	chr2R	18115611	intergenic	not near genes	chr2R_16_18110001	chr2R_18110001	CK2_1-HE
1238	chr2R	18358332	18358374	chr2R	18372615	18372657	roo	6	14281	6.0	8.0	7.0	0.8	14325	chr2R	18358332	intergenic	not near genes	chr2R	18365494	intergenic	not near genes	chr2R	18372657	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	CK2_1-HE
1245	chr2R	18487768	18487826	chr2R	18495290	18495348	blood	14	7522	8.0	8.5	8.2	1.5	7580	chr2R	18487768	intron	CG30116 -	chr2R	18491558	intron	CG30116 -	chr2R	18495348	intron	CG30116 -	chr2R_14_18490001	chr2R_18490001	CK2_1-HE
1250	chr2R	18575745	18575795	chr2R	18581995	18582054	3S18	7	6248	9.5	5.5	7.5	0.8	6309	chr2R	18575745	intron	GEFmeso -	chr2R	18578900	intron	GEFmeso -	chr2R	18582054	intron	GEFmeso -	chr2R_7_18575001	chr2R_18575001	CK2_1-HE
1251	chr2R	18575811	18575823	chr2R	18581983	18582076	3S18	23	6216	6.5	5.0	5.8	3.4	6265	chr2R	18575811	intron	GEFmeso -	chr2R	18578944	intron	GEFmeso -	chr2R	18582076	intron	GEFmeso -	chr2R_23_18575001	chr2R_18575001	CK2_1-HE
1252	chr2R	18590808	18590886	chr2R	18600031	18600073	roo	19	9220	3.5	7.5	5.5	2.9	9265	chr2R	18590808	intron	GEFmeso -	chr2R	18595440	intron	GEFmeso -	chr2R	18600073	intron	GEFmeso -	chr2R_19_18595001	chr2R_18595001	CK2_1-HE
1293	chr2R	19715817	19715853	chr2R	19723357	19723393	blood	7	7540	4.5	12.5	8.5	0.7	7576	chr2R	19715817	intergenic	not near genes	chr2R	19719605	intergenic	not near genes	chr2R	19723393	intergenic	not near genes	chr2R_7_19715001	chr2R_19715001	CK2_1-HE
1294	chr2R	19776544	19776612	chr2R	19779937	19780006	jockey	13	3389	3.5	6.0	4.8	2.2	3462	chr2R	19776544	intergenic	not near genes	chr2R	19778275	intergenic	not near genes	chr2R	19780006	intergenic	not near genes	chr2R_13_19775001	chr2R_19775001	CK2_1-HE
1300	chr2R	19914796	19914859	chr2R	19922279	19922342	mdg1	9	7483	5.5	7.0	6.2	1.2	7546	chr2R	19914796	intergenic	not near genes	chr2R	19918569	intergenic	not near genes	chr2R	19922342	intergenic	not near genes	chr2R_9_19915001	chr2R_19915001	CK2_1-HE
1302	chr2R	19957370	19957376	chr2R	19962643	19962649	copia	4	5273	16.0	10.0	13.0	0.3	5279	chr2R	19957370	intergenic	CG44623 +	chr2R	19960010	intergenic	not near genes	chr2R	19962649	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	CK2_1-HE
1303	chr2R	19957383	19957453	chr2R	19962636	19962645	copia	20	5259	5.5	10.0	7.8	2.3	5262	chr2R	19957383	intergenic	CG44623 +	chr2R	19960014	intergenic	not near genes	chr2R	19962645	intergenic	not near genes	chr2R_20_19960001	chr2R_19960001	CK2_1-HE
1305	chr2R	20069221	20069249	chr2R	20071876	20071906	opus	8	2693	0.0	4.0	2.0	2.7	2685	chr2R	20069221	intergenic	not near genes	chr2R	20070564	intergenic	not near genes	chr2R	20071906	intergenic	not near genes	chr2R_8_20070001	chr2R_20070001	CK2_1-HE
1315	chr2R	20368474	20368496	chr2R	20377707	20377730	roo	6	9233	8.5	13.0	10.8	0.5	9256	chr2R	20368474	intergenic	not near genes	chr2R	20373102	intergenic	not near genes	chr2R	20377730	intergenic	not near genes	chr2R_6_20370001	chr2R_20370001	CK2_1-HE
1336	chr2R	20739383	20739462	chr2R	20744222	20744298	F-element	18	4827	14.5	10.5	12.5	1.3	4915	chr2R	20739383	intron	dpr +	chr2R	20741840	intron	dpr +	chr2R	20744298	intron	dpr +	chr2R_18_20740001	chr2R_20740001	CK2_1-HE
1343	chr2R	21151080	21151144	chr2R	21153763	21153845	opus	5	2695	3.5	4.5	4.0	1.0	2765	chr2R	21151080	exon	CG30389 -	chr2R	21152462	intron	CG30389 -	chr2R	21153845	intron	CG30389 -	chr2R_5_21150001	chr2R_21150001	CK2_1-HE
1363	chr2R	21738210	21738245	chr2R	21747442	21747451	roo	7	9218	13.5	10.0	11.8	0.5	9241	chr2R	21738210	intergenic	not near genes	chr2R	21742830	intergenic	not near genes	chr2R	21747451	intergenic	not near genes	chr2R_7_21740001	chr2R_21740001	CK2_1-HE
1364	chr2R	21738246	21738255	chr2R	21747437	21747466	roo	4	9208	12.0	9.5	10.8	0.3	9220	chr2R	21738246	intergenic	not near genes	chr2R	21742856	intergenic	not near genes	chr2R	21747466	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	CK2_1-HE
1365	chr2R	21753024	21753037	chr2R	21753580	21753593	roo	8	555	17.0	10.0	13.5	0.6	569	chr2R	21753024	intergenic	not near genes	chr2R	21753308	intergenic	not near genes	chr2R	21753593	intergenic	not near genes	chr2R_8_21750001	chr2R_21750001	CK2_1-HE
1366	chr2R	21753038	21753104	chr2R	21753576	21753660	roo	33	552	7.5	9.5	8.5	3.5	622	chr2R	21753038	intergenic	not near genes	chr2R	21753349	intergenic	not near genes	chr2R	21753660	intergenic	not near genes	chr2R_33_21750001	chr2R_21750001	CK2_1-HE
1370	chr2R	21809466	21809537	chr2R	21817777	21817848	roo	11	8310	4.5	5.0	4.8	1.9	8382	chr2R	21809466	intergenic	not near genes	chr2R	21813657	intergenic	not near genes	chr2R	21817848	intergenic	not near genes	chr2R_11_21810001	chr2R_21810001	CK2_1-HE
1396	chr2R	22349634	22349638	chr2R	22351488	22351493	jockey	4	1855	26.5	7.0	16.8	0.2	1859	chr2R	22349634	intron	Liprin-gamma -	chr2R	22350564	intron	Liprin-gamma -	chr2R	22351493	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	CK2_1-HE
1397	chr2R	22349647	22349710	chr2R	22351483	22351565	jockey	26	1850	8.5	7.0	7.8	3.0	1918	chr2R	22349647	intron	Liprin-gamma -	chr2R	22350606	intron	Liprin-gamma -	chr2R	22351565	intron	Liprin-gamma -	chr2R_26_22350001	chr2R_22350001	CK2_1-HE
1399	chr2R	22360321	22360412	chr2R	22360825	22360905	jockey	5	502	5.0	8.0	6.5	0.7	584	chr2R	22360321	intron	Liprin-gamma -	chr2R	22360613	intron	Liprin-gamma -	chr2R	22360905	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	CK2_1-HE
1403	chr2R	22465255	22465321	chr2R	22465519	22465584	BS	21	264	16.0	8.0	12.0	1.6	329	chr2R	22465255	intron	CG10384 +	chr2R	22465420	intron	CG10384 +	chr2R	22465584	intron	CG10384 +	chr2R_21_22465001	chr2R_22465001	CK2_1-HE
1405	chr2R	22525697	22525764	chr2R	22529323	22529390	jockey	11	3626	6.0	6.5	6.2	1.5	3693	chr2R	22525697	intron	px -	chr2R	22527544	intron	px -	chr2R	22529390	intron	px -	chr2R_11_22525001	chr2R_22525001	CK2_1-HE
1406	chr2R	22580380	22580440	chr2R	22586601	22586661	diver	8	6221	5.5	7.5	6.5	1.1	6281	chr2R	22580380	intron	dnr1 -	chr2R	22583520	intron	dnr1 -	chr2R	22586661	intron	dnr1 -	chr2R_8_22580001	chr2R_22580001	CK2_1-HE
1409	chr2R	22729391	22729464	chr2R	22729670	22729743	INE-1	21	279	4.5	6.0	5.2	3.4	352	chr2R	22729391	intron	jbug -	chr2R	22729567	intron	jbug -	chr2R	22729743	intron	jbug -	chr2R_21_22725001	chr2R_22725001	CK2_1-HE
1415	chr2R	22842969	22843002	chr2R	22845002	22845035	flea	4	2033	7.5	5.0	6.2	0.6	2066	chr2R	22842969	3` UTR	CG9826 +	chr2R	22844002	intergenic	not near genes	chr2R	22845035	intergenic	not near genes	chr2R_4_22840001	chr2R_22840001	CK2_1-HE
1423	chr2R	22958733	22958795	chr2R	22963894	22963913	flea	4	5148	3.0	2.5	2.8	1.1	5180	chr2R	22958733	intergenic	not near genes	chr2R	22961323	intergenic	not near genes	chr2R	22963913	intergenic	not near genes	chr2R_4_22960001	chr2R_22960001	CK2_1-HE
1440	chr2R	23402546	23402629	chr2R	23407693	23407776	flea	14	5147	0.5	4.5	2.5	4.0	5230	chr2R	23402546	intergenic	CG3520 -	chr2R	23405161	intergenic	not near genes	chr2R	23407776	intergenic	not near genes	chr2R_14_23405001	chr2R_23405001	CK2_1-HE
1450	chr2R	23529546	23529561	chr2R	23537156	23537186	412	5	7632	11.0	3.5	7.2	0.6	7640	chr2R	23529546	intron	bw -	chr2R	23533366	intron	bw -	chr2R	23537186	exon	bw -	chr2R_5_23530001	chr2R_23530001	CK2_1-HE
1451	chr2R	23529567	23529583	chr2R	23537150	23537185	412	5	7619	8.5	3.0	5.8	0.7	7618	chr2R	23529567	intron	bw -	chr2R	23533376	intron	bw -	chr2R	23537185	exon	bw -	chr2R_5_23530001	chr2R_23530001	CK2_1-HE
1461	chr2R	23914247	23914327	chr2R	23921934	23922018	412	21	7688	3.5	3.0	3.2	5.0	7771	chr2R	23914247	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23922018	exon	kcc +	chr2R_21_23915001	chr2R_23915001	CK2_1-HE
1464	chr2R	24147027	24147076	chr2R	24154644	24154707	412	18	7634	10.5	6.0	8.2	2.0	7680	chr2R	24147027	intron	Dat +	chr2R	24150867	intron	Dat +	chr2R	24154707	intron	Dat +	chr2R_18_24150001	chr2R_24150001	CK2_1-HE
1465	chr2R	24177182	24177268	chr2R	24184738	24184821	412	11	7555	7.0	5.0	6.0	1.6	7639	chr2R	24177182	3` UTR	Nop60B +	chr2R	24181002	intron	Nop60B +	chr2R	24184821	intron	Nop60B +	chr2R_11_24180001	chr2R_24180001	CK2_1-HE
1469	chr2R	24353371	24353402	chr2R	24361804	24361818	roo	4	8429	6.5	3.5	5.0	0.7	8447	chr2R	24353371	intron,intron	bs +,CR44811 -	chr2R	24357594	intron,intron	bs +,CR44811 -	chr2R	24361818	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	CK2_1-HE
1476	chr2R	24647530	24647612	chr2R	24655158	24655186	412	16	7623	4.5	7.0	5.8	2.4	7656	chr2R	24647530	intergenic	not near genes	chr2R	24651358	intergenic	not near genes	chr2R	24655186	intergenic	not near genes	chr2R_16_24650001	chr2R_24650001	CK2_1-HE
1478	chr2R	24727842	24727915	chr2R	24735397	24735408	mdg1	16	7566	4.0	9.5	6.8	2.1	7566	chr2R	24727842	intron	Mid1 -	chr2R	24731625	intron	Mid1 -	chr2R	24735408	intron	Mid1 -	chr2R_16_24730001	chr2R_24730001	CK2_1-HE
1479	chr2R	24763569	24763640	chr2R	24765598	24765653	G2	8	2037	1.5	2.5	2.0	2.7	2084	chr2R	24763569	exon	CG3894 +	chr2R	24764611	intron	CG3894 +	chr2R	24765653	exon	CG3894 +	chr2R_8_24760001	chr2R_24760001	CK2_1-HE
1488	chr2R	25141596	25141637	chr2R	25159357	25159398	roo	13	17761	9.5	6.5	8.0	1.4	17802	chr2R	25141596	intergenic	not near genes	chr2R	25150497	intergenic	not near genes	chr2R	25159398	intergenic	not near genes	chr2R_13_25150001	chr2R_25150001	CK2_1-HE
1489	chr2R	25141638	25141674	chr2R	25159347	25159433	roo	13	17757	6.0	5.5	5.8	1.9	17795	chr2R	25141638	intergenic	not near genes	chr2R	25150536	intergenic	not near genes	chr2R	25159433	intergenic	not near genes	chr2R_13_25150001	chr2R_25150001	CK2_1-HE
1501	chr3L	402653	402661	chr3L	409777	409785	297	5	7123	38.5	30.5	34.5	0.1	7132	chr3L	402653	intergenic	not near genes	chr3L	406219	intergenic	not near genes	chr3L	409785	intergenic	not near genes	chr3L_5_405001	chr3L_405001	CK2_1-HE
1502	chr3L	402664	402694	chr3L	409762	409818	297	22	7119	30.5	26.0	28.2	0.8	7154	chr3L	402664	intergenic	not near genes	chr3L	406241	intergenic	not near genes	chr3L	409818	intergenic	not near genes	chr3L_22_405001	chr3L_405001	CK2_1-HE
1503	chr3L	402698	402713	chr3L	409741	409801	297	7	7105	22.0	19.0	20.5	0.3	7103	chr3L	402698	intergenic	not near genes	chr3L	406250	intergenic	not near genes	chr3L	409801	intergenic	not near genes	chr3L_7_405001	chr3L_405001	CK2_1-HE
1521	chr3L	789896	789947	chr3L	790453	790502	roo	7	553	0.0	4.5	2.2	2.2	606	chr3L	789896	intergenic	not near genes	chr3L	790199	intergenic	not near genes	chr3L	790502	intergenic	not near genes	chr3L_7_790001	chr3L_790001	CK2_1-HE
1524	chr3L	857959	858028	chr3L	866506	866541	Tirant	9	8547	2.0	10.0	6.0	1.3	8582	chr3L	857959	intergenic	not near genes	chr3L	862250	intergenic	not near genes	chr3L	866541	5` UTR	CG12502 +	chr3L_9_860001	chr3L_860001	CK2_1-HE
1525	chr3L	925122	925186	chr3L	932619	932683	mdg1	11	7496	6.0	7.5	6.8	1.4	7561	chr3L	925122	intron	Glut1 +	chr3L	928902	intron	Glut1 +	chr3L	932683	intron	Glut1 +	chr3L_11_925001	chr3L_925001	CK2_1-HE
1527	chr3L	939716	939794	chr3L	940908	940976	jockey	16	1185	7.0	0.0	3.5	3.6	1260	chr3L	939716	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940976	intron	Glut1 +	chr3L_16_940001	chr3L_940001	CK2_1-HE
1530	chr3L	1047341	1047368	chr3L	1055162	1055251	412	7	7862	2.5	3.5	3.0	1.8	7910	chr3L	1047341	intron	bab1 -	chr3L	1051296	intron	bab1 -	chr3L	1055251	intron	bab1 -	chr3L_7_1050001	chr3L_1050001	CK2_1-HE
1535	chr3L	1154116	1154141	chr3L	1163337	1163360	roo	7	9221	4.0	6.0	5.0	1.2	9244	chr3L	1154116	intron	bab2 -	chr3L	1158738	intron	bab2 -	chr3L	1163360	intron	bab2 -	chr3L_7_1155001	chr3L_1155001	CK2_1-HE
1536	chr3L	1219552	1219582	chr3L	1227356	1227386	412	7	7799	6.5	3.0	4.8	1.2	7834	chr3L	1219552	intron	mwh +	chr3L	1223469	intron	mwh +	chr3L	1227386	intron	mwh +	chr3L_7_1220001	chr3L_1220001	CK2_1-HE
1537	chr3L	1219587	1219610	chr3L	1227338	1227372	412	7	7789	4.0	3.0	3.5	1.6	7785	chr3L	1219587	intron	mwh +	chr3L	1223480	intron	mwh +	chr3L	1227372	intron	mwh +	chr3L_7_1220001	chr3L_1220001	CK2_1-HE
1545	chr3L	1424703	1424773	chr3L	1430017	1430084	Rt1a	10	5308	0.0	8.0	4.0	2.0	5381	chr3L	1424703	intron	Ptp61F -	chr3L	1427394	intron	Ptp61F -	chr3L	1430084	intron	Ptp61F -	chr3L_10_1425001	chr3L_1425001	CK2_1-HE
1549	chr3L	1485666	1485740	chr3L	1486908	1486938	1360	19	1231	8.5	10.5	9.5	1.8	1272	chr3L	1485666	intron	stet -	chr3L	1486302	intron	stet -	chr3L	1486938	intron	stet -	chr3L_19_1485001	chr3L_1485001	CK2_1-HE
1550	chr3L	1505936	1506020	chr3L	1513604	1513688	17.6	26	7668	6.5	7.5	7.0	3.2	7752	chr3L	1505936	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513688	intron,intron	Psa +,cue -	chr3L_26_1505001	chr3L_1505001	CK2_1-HE
1557	chr3L	1740789	1740831	chr3L	1741104	1741144	pogo	5	315	10.0	0.0	5.0	0.8	355	chr3L	1740789	intron	Gk +	chr3L	1740966	intron	Gk +	chr3L	1741144	intron	Gk +	chr3L_5_1740001	chr3L_1740001	CK2_1-HE
1567	chr3L	2108208	2108234	chr3L	2113483	2113509	copia	7	5275	4.5	12.0	8.2	0.8	5301	chr3L	2108208	intron	sls -	chr3L	2110858	intron	sls -	chr3L	2113509	intron	sls -	chr3L_7_2110001	chr3L_2110001	CK2_1-HE
1575	chr3L	2447449	2447517	chr3L	2456676	2456744	roo	21	9224	7.0	5.5	6.2	2.9	9295	chr3L	2447449	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456744	intron	CG45186 +	chr3L_21_2450001	chr3L_2450001	CK2_1-HE
1592	chr3L	2751396	2751454	chr3L	2755762	2755779	F-element	8	4361	5.0	7.5	6.2	1.1	4383	chr3L	2751396	intron	Mrtf -	chr3L	2753588	intron	Mrtf -	chr3L	2755779	intron	Mrtf -	chr3L_8_2750001	chr3L_2750001	CK2_1-HE
1598	chr3L	2927782	2927870	chr3L	2936130	2936217	Tirant	20	8347	7.5	7.5	7.5	2.4	8435	chr3L	2927782	intron	Shab +	chr3L	2932000	intron	Shab +	chr3L	2936217	intron	Shab +	chr3L_20_2930001	chr3L_2930001	CK2_1-HE
1601	chr3L	3051682	3051753	chr3L	3051995	3052069	pogo	10	315	3.5	4.0	3.8	2.1	387	chr3L	3051682	3` UTR	CG32485 +	chr3L	3051876	intergenic	CG32485 +	chr3L	3052069	intergenic	CG32485 +,CG1271 +	chr3L_10_3050001	chr3L_3050001	CK2_1-HE
1603	chr3L	3061222	3061255	chr3L	3069876	3069904	Tirant	8	8651	21.5	9.0	15.2	0.5	8682	chr3L	3061222	intron	CG32486 -	chr3L	3065563	intron	CG32486 -	chr3L	3069904	intron	CG32486 -	chr3L_8_3065001	chr3L_3065001	CK2_1-HE
1604	chr3L	3061262	3061311	chr3L	3069868	3069923	Tirant	24	8625	10.5	7.5	9.0	2.4	8661	chr3L	3061262	intron	CG32486 -	chr3L	3065592	intron	CG32486 -	chr3L	3069923	intron	CG32486 -	chr3L_24_3065001	chr3L_3065001	CK2_1-HE
1611	chr3L	3281388	3281443	chr3L	3281948	3282008	Doc	18	559	15.0	11.0	13.0	1.3	620	chr3L	3281388	intron	CG12017 +	chr3L	3281698	intron	CG12017 +	chr3L	3282008	intron	CG12017 +	chr3L_18_3280001	chr3L_3280001	CK2_1-HE
1619	chr3L	3475017	3475064	chr3L	3475532	3475562	jockey	4	504	14.5	14.0	14.2	0.3	545	chr3L	3475017	intron	CG42324 +	chr3L	3475290	intron	CG42324 +	chr3L	3475562	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	CK2_1-HE
1625	chr3L	3601237	3601323	chr3L	3606619	3606705	copia	19	5379	5.5	5.0	5.2	3.1	5468	chr3L	3601237	intron	Eip63E +	chr3L	3603971	intron	Eip63E +	chr3L	3606705	intron	Eip63E +	chr3L_19_3600001	chr3L_3600001	CK2_1-HE
1636	chr3L	3833675	3833764	chr3L	3833987	3834076	pogo	16	312	8.5	4.5	6.5	2.1	401	chr3L	3833675	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834076	intron	enc +	chr3L_16_3830001	chr3L_3830001	CK2_1-HE
1644	chr3L	4328685	4328747	chr3L	4336253	4336315	412	25	7566	2.5	8.0	5.2	4.0	7630	chr3L	4328685	intron	Cip4 -	chr3L	4332500	intron	Cip4 -	chr3L	4336315	exon	Cip4 -	chr3L_25_4330001	chr3L_4330001	CK2_1-HE
1658	chr3L	4773613	4773638	chr3L	4774403	4774430	Rt1a	6	790	11.5	11.5	11.5	0.5	817	chr3L	4773613	intron	RhoGEF64C +	chr3L	4774022	intron	RhoGEF64C +	chr3L	4774430	intron	RhoGEF64C +	chr3L_6_4770001	chr3L_4770001	CK2_1-HE
1663	chr3L	4901086	4901130	chr3L	4907347	4907391	diver	14	6261	7.5	8.0	7.8	1.6	6305	chr3L	4901086	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907391	intergenic	not near genes	chr3L_14_4900001	chr3L_4900001	CK2_1-HE
1668	chr3L	5034123	5034176	chr3L	5043346	5043413	roo	7	9229	7.5	0.0	3.8	1.5	9290	chr3L	5034123	intron	Con -	chr3L	5038768	intron	Con -	chr3L	5043413	intron	Con -	chr3L_7_5035001	chr3L_5035001	CK2_1-HE
1669	chr3L	5045399	5045469	chr3L	5050251	5050321	Doc	20	4852	15.5	10.0	12.8	1.4	4922	chr3L	5045399	5` UTR	Con -	chr3L	5047860	intron	Con -	chr3L	5050321	intron	Con -	chr3L_20_5045001	chr3L_5045001	CK2_1-HE
1697	chr3L	5909970	5910050	chr3L	5910282	5910362	pogo	8	312	4.5	0.5	2.5	2.3	392	chr3L	5909970	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910362	intron	CG13288 +	chr3L_8_5910001	chr3L_5910001	CK2_1-HE
1700	chr3L	5926260	5926333	chr3L	5926521	5926594	BS	14	261	6.5	10.5	8.5	1.5	334	chr3L	5926260	intron	Vap-33B +	chr3L	5926427	intron	Vap-33B +	chr3L	5926594	intron	Vap-33B +	chr3L_14_5925001	chr3L_5925001	CK2_1-HE
1703	chr3L	6001620	6001695	chr3L	6004391	6004466	jockey	11	2770	6.0	1.0	3.5	2.4	2846	chr3L	6001620	intron	PVRAP +	chr3L	6003043	intron	PVRAP +	chr3L	6004466	intron	PVRAP +	chr3L_11_6000001	chr3L_6000001	CK2_1-HE
1707	chr3L	6040307	6040387	chr3L	6042734	6042814	Doc	23	2426	2.5	11.5	7.0	2.9	2507	chr3L	6040307	intergenic	Jon65Aiv +	chr3L	6041560	intergenic	not near genes	chr3L	6042814	intergenic	not near genes	chr3L_23_6040001	chr3L_6040001	CK2_1-HE
1712	chr3L	6220859	6220917	chr3L	6230082	6230140	roo	18	9222	7.0	3.5	5.2	2.9	9281	chr3L	6220859	5` UTR	pncr008:3L +	chr3L	6225500	intergenic	not near genes	chr3L	6230140	intergenic	not near genes	chr3L_18_6225001	chr3L_6225001	CK2_1-HE
1716	chr3L	6334948	6335027	chr3L	6335490	6335569	297	36	540	7.0	13.5	10.2	3.2	621	chr3L	6334948	intron	CG13300 -	chr3L	6335258	intron	CG13300 -	chr3L	6335569	intron	CG13300 -	chr3L_36_6335001	chr3L_6335001	CK2_1-HE
1719	chr3L	6405613	6405673	chr3L	6432137	6432208	roo	15	26533	6.0	7.0	6.5	2.0	26595	chr3L	6405613	intron	CG42747 +	chr3L	6418910	intron	CG42747 +	chr3L	6432208	intron	CG42747 +	chr3L_15_6415001	chr3L_6415001	CK2_1-HE
1722	chr3L	6620542	6620599	chr3L	6621053	6621107	Rt1c	37	507	8.5	16.0	12.2	2.8	565	chr3L	6620542	intergenic	not near genes	chr3L	6620824	intergenic	not near genes	chr3L	6621107	intergenic	not near genes	chr3L_37_6620001	chr3L_6620001	CK2_1-HE
1733	chr3L	6781102	6781154	chr3L	6783183	6783235	Doc	13	2081	3.0	3.5	3.2	3.1	2133	chr3L	6781102	intergenic	not near genes	chr3L	6782168	intergenic	not near genes	chr3L	6783235	intergenic	not near genes	chr3L_13_6780001	chr3L_6780001	CK2_1-HE
1740	chr3L	6855885	6855908	chr3L	6860722	6860730	Doc	4	4840	9.5	15.5	12.5	0.3	4845	chr3L	6855885	intergenic	not near genes	chr3L	6858308	intergenic	not near genes	chr3L	6860730	intergenic	not near genes	chr3L_4_6855001	chr3L_6855001	CK2_1-HE
1741	chr3L	6855933	6855942	chr3L	6860720	6860724	Doc	6	4820	4.5	15.5	10.0	0.5	4791	chr3L	6855933	intergenic	not near genes	chr3L	6858328	intergenic	not near genes	chr3L	6860724	intergenic	not near genes	chr3L_6_6855001	chr3L_6855001	CK2_1-HE
1743	chr3L	6887456	6887529	chr3L	6895019	6895092	roo	21	7561	9.0	6.0	7.5	2.5	7636	chr3L	6887456	intergenic	not near genes	chr3L	6891274	intergenic	not near genes	chr3L	6895092	intergenic	not near genes	chr3L_21_6890001	chr3L_6890001	CK2_1-HE
1760	chr3L	7377255	7377336	chr3L	7380431	7380512	297	11	3172	3.0	1.5	2.2	3.4	3257	chr3L	7377255	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380512	intron	SMSr -	chr3L_11_7375001	chr3L_7375001	CK2_1-HE
1763	chr3L	7498699	7498766	chr3L	7503547	7503614	F-element	18	4848	13.0	5.5	9.2	1.8	4915	chr3L	7498699	5` UTR	CG8539 -	chr3L	7501156	intergenic	not near genes	chr3L	7503614	intergenic	not near genes	chr3L_18_7500001	chr3L_7500001	CK2_1-HE
1773	chr3L	7793651	7793730	chr3L	7800774	7800853	297	28	7123	6.5	9.0	7.8	3.2	7202	chr3L	7793651	intron	CG32369 -	chr3L	7797252	intron	CG32369 -	chr3L	7800853	intron	CG32369 -	chr3L_28_7795001	chr3L_7795001	CK2_1-HE
1776	chr3L	7886454	7886527	chr3L	7889043	7889116	Stalker4	18	2587	7.5	4.0	5.8	2.6	2662	chr3L	7886454	intron	CG32365 +	chr3L	7887785	intron	CG32365 +	chr3L	7889116	intron	CG32365 +	chr3L_18_7885001	chr3L_7885001	CK2_1-HE
1778	chr3L	7916777	7916806	chr3L	7926019	7926048	roo	5	9241	13.0	4.5	8.8	0.5	9271	chr3L	7916777	3` UTR	syd -	chr3L	7921412	intron	syd -	chr3L	7926048	3` UTR	syd -	chr3L_5_7920001	chr3L_7920001	CK2_1-HE
1781	chr3L	7985311	7985376	chr3L	7987710	7987775	NOF	13	2398	3.5	6.0	4.8	2.2	2464	chr3L	7985311	intron	nmo +	chr3L	7986543	intron	nmo +	chr3L	7987775	intron	nmo +	chr3L_13_7985001	chr3L_7985001	CK2_1-HE
1783	chr3L	8019684	8019736	chr3L	8024123	8024179	NOF	4	4453	1.0	4.5	2.8	1.1	4495	chr3L	8019684	intron	nmo +	chr3L	8021932	intron	nmo +	chr3L	8024179	intron	nmo +	chr3L_4_8020001	chr3L_8020001	CK2_1-HE
1789	chr3L	8233521	8233579	chr3L	8238854	8238912	Rt1a	22	5331	7.0	15.0	11.0	1.8	5391	chr3L	8233521	intron	CG7213 -	chr3L	8236216	intron	CG7213 -	chr3L	8238912	intron,intron	CG7213 -,Dscam4 +	chr3L_22_8235001	chr3L_8235001	CK2_1-HE
1797	chr3L	8481748	8481759	chr3L	8490937	8490945	roo	5	9198	9.0	3.5	6.2	0.7	9197	chr3L	8481748	intron	CG43163 -	chr3L	8486346	intron	CG43163 -	chr3L	8490945	intron	CG43163 -	chr3L_5_8485001	chr3L_8485001	CK2_1-HE
1799	chr3L	8498244	8498311	chr3L	8505782	8505849	blood	14	7538	4.0	4.0	4.0	2.8	7605	chr3L	8498244	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505849	intron	CG43163 -	chr3L_14_8500001	chr3L_8500001	CK2_1-HE
1805	chr3L	8791257	8791302	chr3L	8796747	8796786	I-element	12	5489	9.5	5.0	7.2	1.5	5529	chr3L	8791257	exon	Fhos +	chr3L	8794022	intron	Fhos +	chr3L	8796786	intron	Fhos +	chr3L_12_8790001	chr3L_8790001	CK2_1-HE
1814	chr3L	9076867	9076891	chr3L	9084498	9084522	412	9	7629	26.5	13.0	19.8	0.4	7655	chr3L	9076867	exon	Tequila +	chr3L	9080694	intron	Tequila +	chr3L	9084522	exon	Tequila +	chr3L_9_9080001	chr3L_9080001	CK2_1-HE
1815	chr3L	9076904	9076941	chr3L	9084486	9084572	412	24	7627	15.0	9.5	12.2	1.8	7668	chr3L	9076904	exon	Tequila +	chr3L	9080738	intron	Tequila +	chr3L	9084572	exon	Tequila +	chr3L_24_9080001	chr3L_9080001	CK2_1-HE
1817	chr3L	9130496	9130578	chr3L	9134328	9134374	412	15	3827	3.0	4.5	3.8	3.1	3878	chr3L	9130496	intergenic	bol -	chr3L	9132435	intergenic	not near genes	chr3L	9134374	intergenic	Dhpr +	chr3L_15_9130001	chr3L_9130001	CK2_1-HE
1819	chr3L	9164639	9164717	chr3L	9166176	9166260	hobo	10	1538	3.5	2.0	2.8	2.6	1621	chr3L	9164639	intron	Rdl -	chr3L	9165450	intron	Rdl -	chr3L	9166260	intron	Rdl -	chr3L_10_9165001	chr3L_9165001	CK2_1-HE
1820	chr3L	9219199	9219263	chr3L	9219925	9219961	jockey	36	736	12.5	16.0	14.2	2.4	762	chr3L	9219199	intergenic	not near genes	chr3L	9219580	intergenic	not near genes	chr3L	9219961	intergenic	not near genes	chr3L_36_9215001	chr3L_9215001	CK2_1-HE
1822	chr3L	9270560	9270648	chr3L	9278385	9278426	roo	24	7801	4.0	10.0	7.0	3.0	7866	chr3L	9270560	intron	GluRIB +	chr3L	9274493	intron	GluRIB +	chr3L	9278426	exon	GluRIB +	chr3L_24_9270001	chr3L_9270001	CK2_1-HE
1829	chr3L	9392485	9392498	chr3L	9395370	9395382	Doc	13	2889	20.5	28.5	24.5	0.5	2897	chr3L	9392485	intron	CG4080 -	chr3L	9393934	intron	CG4080 -	chr3L	9395382	intron	CG4080 -	chr3L_13_9390001	chr3L_9390001	CK2_1-HE
1830	chr3L	9443504	9443537	chr3L	9445351	9445384	S-element	7	1847	1.0	5.0	3.0	1.8	1880	chr3L	9443504	intron	CG33926 +	chr3L	9444444	intron	CG33926 +	chr3L	9445384	intron	CG33926 +	chr3L_7_9440001	chr3L_9440001	CK2_1-HE
1832	chr3L	9501676	9501727	chr3L	9502233	9502284	roo	9	556	1.0	3.5	2.2	2.8	608	chr3L	9501676	intron	path -	chr3L	9501980	intron	path -	chr3L	9502284	intron	path -	chr3L_9_9500001	chr3L_9500001	CK2_1-HE
1835	chr3L	9526436	9526483	chr3L	9528187	9528234	Doc	12	1751	6.0	5.0	5.5	1.8	1798	chr3L	9526436	intergenic	not near genes	chr3L	9527335	intergenic	not near genes	chr3L	9528234	intergenic	not near genes	chr3L_12_9525001	chr3L_9525001	CK2_1-HE
1836	chr3L	9526484	9526493	chr3L	9528183	9528244	Doc	6	1742	6.0	4.0	5.0	1.0	1760	chr3L	9526484	intergenic	not near genes	chr3L	9527364	intergenic	not near genes	chr3L	9528244	intergenic	not near genes	chr3L_6_9525001	chr3L_9525001	CK2_1-HE
1837	chr3L	9533697	9533714	chr3L	9541328	9541345	412	6	7630	16.5	10.0	13.2	0.4	7648	chr3L	9533697	intergenic	not near genes	chr3L	9537521	intergenic	not near genes	chr3L	9541345	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	CK2_1-HE
1838	chr3L	9533717	9533776	chr3L	9541324	9541345	412	16	7618	8.0	9.0	8.5	1.7	7628	chr3L	9533717	intergenic	not near genes	chr3L	9537531	intergenic	not near genes	chr3L	9541345	intergenic	not near genes	chr3L_16_9535001	chr3L_9535001	CK2_1-HE
1839	chr3L	9571843	9571937	chr3L	9572262	9572382	jockey	15	424	3.5	0.0	1.8	5.4	539	chr3L	9571843	intron	CG42673 +	chr3L	9572112	intron	CG42673 +	chr3L	9572382	intron	CG42673 +	chr3L_15_9570001	chr3L_9570001	CK2_1-HE
1841	chr3L	9575852	9575894	chr3L	9581001	9581044	jockey	12	5147	15.0	10.5	12.8	0.9	5192	chr3L	9575852	intron	CG42673 +	chr3L	9578448	intron	CG42673 +	chr3L	9581044	intron	CG42673 +	chr3L_12_9575001	chr3L_9575001	CK2_1-HE
1842	chr3L	9575896	9575931	chr3L	9580999	9581066	jockey	16	5142	8.0	10.5	9.2	1.6	5170	chr3L	9575896	intron	CG42673 +	chr3L	9578481	intron	CG42673 +	chr3L	9581066	intron	CG42673 +	chr3L_16_9575001	chr3L_9575001	CK2_1-HE
1854	chr3L	9929606	9929684	chr3L	9938457	9938535	roo	19	8849	9.0	3.5	6.2	2.6	8929	chr3L	9929606	intron	CG34356 +	chr3L	9934070	intron	CG34356 +	chr3L	9938535	intron	CG34356 +	chr3L_19_9930001	chr3L_9930001	CK2_1-HE
1869	chr3L	10414874	10414964	chr3L	10417315	10417407	Doc	26	2442	5.0	6.0	5.5	4.0	2533	chr3L	10414874	intergenic	CG12362 +	chr3L	10416140	intergenic	not near genes	chr3L	10417407	intergenic	not near genes	chr3L_26_10415001	chr3L_10415001	CK2_1-HE
1895	chr3L	11087000	11087063	chr3L	11088859	11088922	S-element	10	1859	7.0	3.5	5.2	1.6	1922	chr3L	11087000	intron	JIL-1 -	chr3L	11087961	intron	JIL-1 -	chr3L	11088922	intron	JIL-1 -	chr3L_10_11085001	chr3L_11085001	CK2_1-HE
1906	chr3L	11329682	11329726	chr3L	11332912	11333013	jockey	7	3263	2.0	3.5	2.8	1.8	3331	chr3L	11329682	intergenic	not near genes	chr3L	11331348	intergenic	not near genes	chr3L	11333013	intergenic	not near genes	chr3L_7_11330001	chr3L_11330001	CK2_1-HE
1917	chr3L	11564722	11564733	chr3L	11572412	11572429	412	4	7694	4.5	3.5	4.0	0.8	7707	chr3L	11564722	5` UTR	CG33267 +	chr3L	11568576	intron	CG33267 +	chr3L	11572429	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	CK2_1-HE
1923	chr3L	11723030	11723108	chr3L	11727896	11727974	Doc	21	4865	9.0	4.5	6.8	2.7	4944	chr3L	11723030	3` UTR	Bmcp +	chr3L	11725502	intron	Bmcp +	chr3L	11727974	3` UTR	Bmcp +	chr3L_21_11725001	chr3L_11725001	CK2_1-HE
1933	chr3L	11864495	11864573	chr3L	11865861	11865939	pogo	18	1365	12.5	8.0	10.2	1.6	1444	chr3L	11864495	intron	CG44837 -	chr3L	11865217	intron	CG44837 -	chr3L	11865939	intron	CG44837 -	chr3L_18_11865001	chr3L_11865001	CK2_1-HE
1977	chr3L	12874870	12874939	chr3L	12877233	12877302	jockey	15	2363	6.5	8.5	7.5	1.8	2432	chr3L	12874870	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877302	intergenic	not near genes	chr3L_15_12875001	chr3L_12875001	CK2_1-HE
1979	chr3L	12957732	12957810	chr3L	12962285	12962363	copia	23	4552	3.5	11.0	7.2	2.8	4631	chr3L	12957732	intergenic	not near genes	chr3L	12960048	intergenic	not near genes	chr3L	12962363	intergenic	not near genes	chr3L_23_12960001	chr3L_12960001	CK2_1-HE
2000	chr3L	13525095	13525167	chr3L	13532962	13533034	roo	21	7863	9.5	11.0	10.2	1.9	7939	chr3L	13525095	intergenic	not near genes	chr3L	13529064	intergenic	not near genes	chr3L	13533034	intergenic	not near genes	chr3L_21_13525001	chr3L_13525001	CK2_1-HE
2001	chr3L	13574566	13574620	chr3L	13580147	13580187	Rt1c	20	5578	29.5	18.5	24.0	0.8	5621	chr3L	13574566	intron	bru-3 -	chr3L	13577376	intron	bru-3 -	chr3L	13580187	intron	bru-3 -	chr3L_20_13575001	chr3L_13575001	CK2_1-HE
2012	chr3L	13804495	13804501	chr3L	13822852	13822858	roo	6	18357	37.0	20.5	28.8	0.2	18363	chr3L	13804495	intergenic	not near genes	chr3L	13813676	intergenic	not near genes	chr3L	13822858	intergenic	not near genes	chr3L_6_13810001	chr3L_13810001	CK2_1-HE
2013	chr3L	13804502	13804565	chr3L	13822851	13822922	roo	29	18353	18.5	20.0	19.2	1.4	18420	chr3L	13804502	intergenic	not near genes	chr3L	13813712	intergenic	not near genes	chr3L	13822922	intergenic	not near genes	chr3L_29_13810001	chr3L_13810001	CK2_1-HE
2031	chr3L	14245511	14245586	chr3L	14245676	14245751	1360	33	162	7.0	7.5	7.2	4.0	240	chr3L	14245511	3` UTR	CR44561 -	chr3L	14245631	3` UTR	CR44561 -	chr3L	14245751	intergenic	CR44561 -,CR44560 +	chr3L_33_14245001	chr3L_14245001	CK2_1-HE
2032	chr3L	14267316	14267378	chr3L	14271827	14271889	F-element	15	4510	11.5	5.5	8.5	1.6	4573	chr3L	14267316	intergenic	not near genes	chr3L	14269602	intergenic	not near genes	chr3L	14271889	intergenic	not near genes	chr3L_15_14265001	chr3L_14265001	CK2_1-HE
2033	chr3L	14295919	14296006	chr3L	14296476	14296552	roo	41	555	13.5	11.5	12.5	3.0	633	chr3L	14295919	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296552	intron	fz +	chr3L_41_14295001	chr3L_14295001	CK2_1-HE
2034	chr3L	14311973	14312049	chr3L	14316846	14316903	X-element	14	4873	2.5	2.0	2.2	4.4	4930	chr3L	14311973	exon	fz +	chr3L	14314438	intron	fz +	chr3L	14316903	intron	fz +	chr3L_14_14310001	chr3L_14310001	CK2_1-HE
2043	chr3L	14468390	14468459	chr3L	14473667	14473736	copia	35	5277	13.0	14.5	13.8	2.4	5346	chr3L	14468390	intron	bbg -	chr3L	14471063	intron	bbg -	chr3L	14473736	intron	bbg -	chr3L_35_14470001	chr3L_14470001	CK2_1-HE
2058	chr3L	14721127	14721182	chr3L	14723041	14723096	Rt1c	12	1910	7.0	10.0	8.5	1.3	1969	chr3L	14721127	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723096	intron	ome +	chr3L_12_14720001	chr3L_14720001	CK2_1-HE
2059	chr3L	14721183	14721205	chr3L	14723030	14723073	Rt1c	10	1889	3.0	9.0	6.0	1.4	1890	chr3L	14721183	intron	ome +	chr3L	14722128	intron	ome +	chr3L	14723073	intron	ome +	chr3L_10_14720001	chr3L_14720001	CK2_1-HE
2061	chr3L	14725563	14725614	chr3L	14728628	14728664	Doc	7	3062	0.0	8.5	4.2	1.3	3101	chr3L	14725563	intron	ome +	chr3L	14727114	intron	ome +	chr3L	14728664	intron	ome +	chr3L_7_14725001	chr3L_14725001	CK2_1-HE
2063	chr3L	14825104	14825141	chr3L	14832902	14832939	Stalker2	8	7797	2.0	9.5	5.8	1.2	7835	chr3L	14825104	intron	CG17839 +	chr3L	14829022	intron	CG17839 +	chr3L	14832939	intron	CG17839 +	chr3L_8_14825001	chr3L_14825001	CK2_1-HE
2071	chr3L	14954303	14954384	chr3L	14956043	14956124	transib2	21	1738	5.0	5.5	5.2	3.4	1821	chr3L	14954303	intergenic	not near genes	chr3L	14955214	intergenic	not near genes	chr3L	14956124	intergenic	not near genes	chr3L_21_14955001	chr3L_14955001	CK2_1-HE
2074	chr3L	14970718	14970764	chr3L	14971099	14971145	F-element	7	381	1.5	1.5	1.5	2.8	427	chr3L	14970718	intergenic	Tom +	chr3L	14970932	intergenic	not near genes	chr3L	14971145	intergenic	not near genes	chr3L_7_14970001	chr3L_14970001	CK2_1-HE
2078	chr3L	15084992	15085059	chr3L	15086229	15086296	1360	7	1237	4.0	3.5	3.8	1.5	1304	chr3L	15084992	intron	cp309 -	chr3L	15085644	intron	cp309 -	chr3L	15086296	intron	cp309 -	chr3L_7_15085001	chr3L_15085001	CK2_1-HE
2085	chr3L	15295711	15295786	chr3L	15298625	15298700	gypsy5	25	2912	12.5	10.5	11.5	2.0	2989	chr3L	15295711	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298700	intergenic	Best4 +	chr3L_25_15295001	chr3L_15295001	CK2_1-HE
2093	chr3L	15423718	15423761	chr3L	15426611	15426676	opus	19	2914	13.0	3.0	8.0	2.1	2958	chr3L	15423718	intergenic	not near genes	chr3L	15425197	intergenic	not near genes	chr3L	15426676	intergenic	not near genes	chr3L_19_15425001	chr3L_15425001	CK2_1-HE
2118	chr3L	15899187	15899224	chr3L	15899825	15899862	jockey	5	634	2.0	2.0	2.0	1.7	675	chr3L	15899187	intergenic	pHCl -	chr3L	15899524	intergenic	pHCl -	chr3L	15899862	intergenic	sff -	chr3L_5_15895001	chr3L_15895001	CK2_1-HE
2119	chr3L	15929149	15929215	chr3L	15938367	15938433	roo	18	9218	3.5	4.5	4.0	3.6	9284	chr3L	15929149	intron	Pka-C3 -	chr3L	15933791	intron	Pka-C3 -	chr3L	15938433	intron	Pka-C3 -	chr3L_18_15930001	chr3L_15930001	CK2_1-HE
2127	chr3L	16184026	16184112	chr3L	16188940	16189016	X-element	16	4913	4.5	5.5	5.0	2.7	4990	chr3L	16184026	intergenic	not near genes	chr3L	16186521	intergenic	not near genes	chr3L	16189016	intergenic	not near genes	chr3L_16_16185001	chr3L_16185001	CK2_1-HE
2137	chr3L	16443785	16443873	chr3L	16446196	16446284	Doc	75	2409	19.0	24.5	21.8	3.3	2499	chr3L	16443785	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445034	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446284	intron,intron	CG33158 +,dsx-c73A -	chr3L_75_16445001	chr3L_16445001	CK2_1-HE
2138	chr3L	16493916	16493995	chr3L	16494504	16494583	jockey	76	587	15.5	21.0	18.2	4.0	667	chr3L	16493916	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494583	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_76_16490001	chr3L_16490001	CK2_1-HE
2143	chr3L	16616449	16616541	chr3L	16621848	16621923	297	10	5394	2.0	0.5	1.2	4.5	5474	chr3L	16616449	3` UTR	Abl -	chr3L	16619186	3` UTR	Abl -	chr3L	16621923	3` UTR	Abl -	chr3L_10_16615001	chr3L_16615001	CK2_1-HE
2156	chr3L	16945670	16945684	chr3L	16954894	16954908	roo	9	9222	31.5	12.5	22.0	0.4	9238	chr3L	16945670	exon	Obp73a +	chr3L	16950289	intergenic	not near genes	chr3L	16954908	5` UTR	Nc73EF +	chr3L_9_16950001	chr3L_16950001	CK2_1-HE
2157	chr3L	16945685	16945748	chr3L	16954893	16954972	roo	39	9221	16.0	12.5	14.2	2.6	9287	chr3L	16945685	exon	Obp73a +	chr3L	16950328	intergenic	not near genes	chr3L	16954972	5` UTR	Nc73EF +	chr3L_39_16950001	chr3L_16950001	CK2_1-HE
2161	chr3L	17034875	17034922	chr3L	17035129	17035181	G2	4	256	1.5	3.0	2.2	1.2	306	chr3L	17034875	intergenic	not near genes	chr3L	17035028	intergenic	not near genes	chr3L	17035181	intergenic	beg +	chr3L_4_17035001	chr3L_17035001	CK2_1-HE
2163	chr3L	17084947	17085026	chr3L	17094167	17094195	roo	26	9218	12.5	15.5	14.0	1.7	9248	chr3L	17084947	intron	Rbp6 -	chr3L	17089571	intron	Rbp6 -	chr3L	17094195	intron	Rbp6 -	chr3L_26_17085001	chr3L_17085001	CK2_1-HE
2178	chr3L	17516926	17517009	chr3L	17524554	17524591	412	16	7624	3.0	3.5	3.2	3.8	7665	chr3L	17516926	intron	CG7564 +	chr3L	17520758	intron	CG7564 +	chr3L	17524591	3` UTR	CG7564 +	chr3L_16_17520001	chr3L_17520001	CK2_1-HE
2182	chr3L	17730793	17730868	chr3L	17738194	17738269	mdg1	9	7401	9.5	7.5	8.5	0.9	7476	chr3L	17730793	intron	Ccn +	chr3L	17734531	intron	Ccn +	chr3L	17738269	intron	Ccn +	chr3L_9_17730001	chr3L_17730001	CK2_1-HE
2186	chr3L	17799763	17799829	chr3L	17801621	17801687	S-element	26	1858	5.5	8.0	6.8	3.3	1924	chr3L	17799763	intron	NUCB1 -	chr3L	17800725	intron	NUCB1 -	chr3L	17801687	intron	NUCB1 -	chr3L_26_17800001	chr3L_17800001	CK2_1-HE
2200	chr3L	18047647	18047691	chr3L	18056775	18056819	roo	5	9128	0.0	1.5	0.8	2.8	9172	chr3L	18047647	intron	Eip75B -	chr3L	18052233	intron	Eip75B -	chr3L	18056819	intron	Eip75B -	chr3L_5_18050001	chr3L_18050001	CK2_1-HE
2233	chr3L	18506085	18506144	chr3L	18509616	18509678	F-element	15	3534	10.0	10.0	10.0	1.4	3593	chr3L	18506085	intergenic	not near genes	chr3L	18507882	intergenic	not near genes	chr3L	18509678	intergenic	not near genes	chr3L_15_18505001	chr3L_18505001	CK2_1-HE
2234	chr3L	18528570	18528642	chr3L	18537801	18537874	roo	24	9232	12.0	9.5	10.8	2.0	9304	chr3L	18528570	intergenic	not near genes	chr3L	18533222	intergenic	not near genes	chr3L	18537874	intergenic	not near genes	chr3L_24_18530001	chr3L_18530001	CK2_1-HE
2237	chr3L	18593885	18593981	chr3L	18595936	18596030	Doc	6	2050	5.5	1.0	3.2	1.4	2145	chr3L	18593885	intergenic	term -	chr3L	18594958	intergenic	not near genes	chr3L	18596030	intergenic	CR45389 +	chr3L_6_18590001	chr3L_18590001	CK2_1-HE
2244	chr3L	18710700	18710777	chr3L	18718723	18718800	Stalker2	18	8023	7.5	9.0	8.2	2.0	8100	chr3L	18710700	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718800	intergenic	not near genes	chr3L_18_18710001	chr3L_18710001	CK2_1-HE
2248	chr3L	18772351	18772425	chr3L	18781103	18781177	roo	35	8752	12.0	13.0	12.5	2.6	8826	chr3L	18772351	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781177	intron	ftz-f1 -	chr3L_35_18775001	chr3L_18775001	CK2_1-HE
2252	chr3L	19008788	19008867	chr3L	19009189	19009264	jockey	19	404	10.5	17.5	14.0	1.3	476	chr3L	19008788	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009264	intron	nkd -	chr3L_19_19005001	chr3L_19005001	CK2_1-HE
2256	chr3L	19116987	19117062	chr3L	19124505	19124580	mdg1	24	7515	4.0	7.5	5.8	3.5	7593	chr3L	19116987	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124580	intron	CG14082 -	chr3L_24_19120001	chr3L_19120001	CK2_1-HE
2260	chr3L	19207997	19208080	chr3L	19209442	19209519	Doc	28	1440	7.0	6.0	6.5	3.7	1522	chr3L	19207997	intron	fz2 -	chr3L	19208758	intron	fz2 -	chr3L	19209519	intron	fz2 -	chr3L_28_19205001	chr3L_19205001	CK2_1-HE
2269	chr3L	19398872	19398930	chr3L	19403660	19403718	F-element	17	4786	6.5	10.0	8.2	1.8	4846	chr3L	19398872	intron	CG32206 -	chr3L	19401295	intron	CG32206 -	chr3L	19403718	intron	CG32206 -	chr3L_17_19400001	chr3L_19400001	CK2_1-HE
2280	chr3L	19820233	19820315	chr3L	19827853	19827935	412	20	7619	6.5	8.0	7.2	2.4	7702	chr3L	19820233	intron	Deaf1 +	chr3L	19824084	intron	Deaf1 +	chr3L	19827935	intron	Deaf1 +	chr3L_20_19820001	chr3L_19820001	CK2_1-HE
2281	chr3L	19848456	19848511	chr3L	19857717	19857771	roo	5	9261	2.5	3.0	2.8	1.3	9315	chr3L	19848456	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857771	intron	Papss +	chr3L_5_19850001	chr3L_19850001	CK2_1-HE
2292	chr3L	20113606	20113672	chr3L	20122934	20123000	roo	9	9328	5.0	4.0	4.5	1.6	9394	chr3L	20113606	intergenic	not near genes	chr3L	20118303	intergenic	not near genes	chr3L	20123000	intergenic	not near genes	chr3L_9_20115001	chr3L_20115001	CK2_1-HE
2299	chr3L	20212555	20212578	chr3L	20218203	20218226	mdg3	4	5648	12.0	5.0	8.5	0.4	5671	chr3L	20212555	intergenic	CG7017 -	chr3L	20215390	intergenic	not near genes	chr3L	20218226	intergenic	CG6933 -	chr3L_4_20215001	chr3L_20215001	CK2_1-HE
2302	chr3L	20257269	20257351	chr3L	20258460	20258542	pogo	38	1191	6.5	9.0	7.8	4.3	1273	chr3L	20257269	intron	rdgC +	chr3L	20257906	intron	rdgC +	chr3L	20258542	intron	rdgC +	chr3L_38_20255001	chr3L_20255001	CK2_1-HE
2306	chr3L	20476698	20476757	chr3L	20484368	20484427	springer	14	7670	13.0	11.0	12.0	1.1	7729	chr3L	20476698	3` UTR	isoQC +	chr3L	20480562	intergenic	not near genes	chr3L	20484427	3` UTR	ZnT77C -	chr3L_14_20480001	chr3L_20480001	CK2_1-HE
2310	chr3L	20590003	20590092	chr3L	20590613	20590661	412	56	603	14.0	9.5	11.8	4.4	658	chr3L	20590003	intergenic	not near genes	chr3L	20590332	intergenic	not near genes	chr3L	20590661	intergenic	not near genes	chr3L_56_20590001	chr3L_20590001	CK2_1-HE
2314	chr3L	20821223	20821297	chr3L	20824763	20824837	NOF	13	3540	5.0	5.5	5.2	2.1	3614	chr3L	20821223	intron	Pka-R1 +	chr3L	20823030	intron	Pka-R1 +	chr3L	20824837	intron	Pka-R1 +	chr3L_13_20820001	chr3L_20820001	CK2_1-HE
2316	chr3L	21014856	21014870	chr3L	21023408	21023421	Tirant	9	8550	28.5	14.0	21.2	0.4	8565	chr3L	21014856	intron	skd -	chr3L	21019138	intron	skd -	chr3L	21023421	intron	skd -	chr3L_9_21015001	chr3L_21015001	CK2_1-HE
2317	chr3L	21014871	21014908	chr3L	21023406	21023460	Tirant	21	8544	20.0	14.0	17.0	1.2	8589	chr3L	21014871	intron	skd -	chr3L	21019166	intron	skd -	chr3L	21023460	intron	skd -	chr3L_21_21015001	chr3L_21015001	CK2_1-HE
2318	chr3L	21014911	21014943	chr3L	21023400	21023423	Tirant	30	8530	10.5	12.0	11.2	2.5	8512	chr3L	21014911	intron	skd -	chr3L	21019167	intron	skd -	chr3L	21023423	intron	skd -	chr3L_30_21015001	chr3L_21015001	CK2_1-HE
2319	chr3L	21151808	21151859	chr3L	21156963	21157014	flea	17	5154	12.0	9.5	10.8	1.4	5206	chr3L	21151808	intron	Ac78C -	chr3L	21154411	intron	Ac78C -	chr3L	21157014	intron	Ac78C -	chr3L_17_21150001	chr3L_21150001	CK2_1-HE
2325	chr3L	21306089	21306138	chr3L	21315319	21315368	roo	21	9230	16.0	7.5	11.8	1.6	9279	chr3L	21306089	3` UTR	CG7632 +	chr3L	21310728	intron	Pc -	chr3L	21315368	3` UTR	Pc -	chr3L_21_21310001	chr3L_21310001	CK2_1-HE
2330	chr3L	21498840	21498849	chr3L	21500519	21500545	1360	4	1690	7.5	16.5	12.0	0.3	1705	chr3L	21498840	intron	Glg1 -	chr3L	21499692	intron	Glg1 -	chr3L	21500545	intron	Glg1 -	chr3L_4_21495001	chr3L_21495001	CK2_1-HE
2336	chr3L	21749273	21749339	chr3L	21754488	21754542	Doc	6	5223	7.5	10.0	8.8	0.6	5269	chr3L	21749273	intron	Syn1 -	chr3L	21751908	intron	Syn1 -	chr3L	21754542	intron	Syn1 -	chr3L_6_21750001	chr3L_21750001	CK2_1-HE
2351	chr3L	22099620	22099704	chr3L	22105877	22105922	3S18	21	6253	12.5	13.0	12.8	1.5	6302	chr3L	22099620	intergenic	not near genes	chr3L	22102771	intergenic	not near genes	chr3L	22105922	intergenic	not near genes	chr3L_21_22100001	chr3L_22100001	CK2_1-HE
2361	chr3L	22555709	22555801	chr3L	22563250	22563290	blood	24	7533	7.0	10.0	8.5	2.5	7581	chr3L	22555709	intergenic	not near genes	chr3L	22559500	intergenic	not near genes	chr3L	22563290	intergenic	not near genes	chr3L_24_22555001	chr3L_22555001	CK2_1-HE
2364	chr3L	22577562	22577641	chr3L	22582418	22582461	Doc	12	4855	7.0	5.5	6.2	1.7	4899	chr3L	22577562	intergenic	not near genes	chr3L	22580012	intergenic	not near genes	chr3L	22582461	3` UTR	CG14459 -	chr3L_12_22580001	chr3L_22580001	CK2_1-HE
2365	chr3L	22617139	22617205	chr3L	22624649	22624728	blood	17	7522	8.5	8.0	8.2	1.8	7589	chr3L	22617139	intron	CG14459 -	chr3L	22620934	intron	CG14459 -	chr3L	22624728	intron	CG14459 -	chr3L_17_22620001	chr3L_22620001	CK2_1-HE
2367	chr3L	22761330	22761397	chr3L	22766835	22766902	Ivk	22	5505	9.0	10.0	9.5	2.1	5572	chr3L	22761330	intron	SPoCk +	chr3L	22764116	intron	SPoCk +	chr3L	22766902	intron	SPoCk +	chr3L_22_22760001	chr3L_22760001	CK2_1-HE
2370	chr3L	22865929	22865988	chr3L	22867133	22867192	Doc	8	1204	9.5	6.5	8.0	0.9	1263	chr3L	22865929	exon	CG33170 +	chr3L	22866560	intron	CG33170 +	chr3L	22867192	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	CK2_1-HE
2373	chr3L	22989805	22989835	chr3L	22996850	22996880	297	8	7045	9.5	2.5	6.0	1.1	7075	chr3L	22989805	intergenic	not near genes	chr3L	22993342	intergenic	not near genes	chr3L	22996880	intergenic	not near genes	chr3L_8_22990001	chr3L_22990001	CK2_1-HE
2374	chr3L	22989848	22989882	chr3L	22996893	22996926	297	7	7044	4.5	4.5	4.5	1.3	7078	chr3L	22989848	intergenic	not near genes	chr3L	22993387	intergenic	not near genes	chr3L	22996926	intergenic	not near genes	chr3L_7_22990001	chr3L_22990001	CK2_1-HE
2377	chr3L	23042164	23042249	chr3L	23048988	23049043	gypsy6	20	6820	8.5	6.5	7.5	2.4	6879	chr3L	23042164	intergenic	not near genes	chr3L	23045604	intergenic	not near genes	chr3L	23049043	intergenic	not near genes	chr3L_20_23045001	chr3L_23045001	CK2_1-HE
2380	chr3L	23290429	23290491	chr3L	23295333	23295395	X-element	30	4904	11.0	13.0	12.0	2.3	4966	chr3L	23290429	intergenic	not near genes	chr3L	23292912	intergenic	not near genes	chr3L	23295395	intergenic	not near genes	chr3L_30_23290001	chr3L_23290001	CK2_1-HE
2381	chr3L	23665465	23665523	chr3L	23665626	23665668	gypsy8	56	160	24.0	27.5	25.8	2.1	203	chr3L	23665465	intron	AGO3 +	chr3L	23665566	intron	AGO3 +	chr3L	23665668	intron	AGO3 +	chr3L_56_23665001	chr3L_23665001	CK2_1-HE
2384	chr3L	23848810	23848838	chr3L	23849679	23849733	R1A1-element	4	888	10.5	7.5	9.0	0.4	923	chr3L	23848810	intron	CG40470 -	chr3L	23849272	intron	CG40470 -	chr3L	23849733	intron	CG40470 -	chr3L_4_23845001	chr3L_23845001	CK2_1-HE
2386	chr3L	23909141	23909215	chr3L	23912220	23912294	G3	10	3080	10.5	9.5	10.0	0.9	3153	chr3L	23909141	intron,5` UTR	CG40470 -,CR43942 +	chr3L	23910718	intron	CG40470 -	chr3L	23912294	exon	CG40470 -	chr3L_10_23910001	chr3L_23910001	CK2_1-HE
2387	chr3L	24012355	24012417	chr3L	24020767	24020829	roo	7	8412	2.5	1.0	1.8	2.5	8474	chr3L	24012355	intergenic	not near genes	chr3L	24016592	intergenic	not near genes	chr3L	24020829	intergenic	not near genes	chr3L_7_24015001	chr3L_24015001	CK2_1-HE
2388	chr3L	24021219	24021291	chr3L	24022447	24022519	1360	11	1227	0.0	1.0	0.5	7.3	1300	chr3L	24021219	intergenic	not near genes	chr3L	24021869	intergenic	not near genes	chr3L	24022519	intergenic	not near genes	chr3L_11_24020001	chr3L_24020001	CK2_1-HE
2390	chr3L	24168766	24168805	chr3L	24176123	24176204	ZAM	13	7376	11.0	6.0	8.5	1.4	7438	chr3L	24168766	intron	Snap25 +	chr3L	24172485	intron	Snap25 +	chr3L	24176204	intron	Snap25 +	chr3L_13_24170001	chr3L_24170001	CK2_1-HE
2393	chr3L	24791807	24791848	chr3L	24796675	24796716	Doc	11	4868	8.5	4.0	6.2	1.5	4909	chr3L	24791807	intergenic	not near genes	chr3L	24794262	intergenic	not near genes	chr3L	24796716	intergenic	not near genes	chr3L_11_24790001	chr3L_24790001	CK2_1-HE
2402	chr3L	25628442	25628509	chr3L	25633284	25633348	F-element	9	4841	7.0	7.5	7.2	1.1	4906	chr3L	25628442	intron	CG41343 -	chr3L	25630895	intron	CG41343 -	chr3L	25633348	intron	CG41343 -	chr3L_9_25630001	chr3L_25630001	CK2_1-HE
2408	chr3L	27356052	27356080	chr3L	27357315	27357350	1360	8	1269	11.0	0.0	5.5	1.2	1298	chr3L	27356052	intron	Dbp80 +	chr3L	27356701	intron	Dbp80 +	chr3L	27357350	intron	Dbp80 +	chr3L_8_27355001	chr3L_27355001	CK2_1-HE
2411	chr3L	27980629	27980697	chr3L	27985498	27985566	Doc	6	4869	1.0	0.5	0.8	3.3	4937	chr3L	27980629	intron	CG17514 -	chr3L	27983098	intron	CG17514 -	chr3L	27985566	intron	CG17514 -	chr3L_6_27980001	chr3L_27980001	CK2_1-HE
2421	chr3R	4206016	4206049	chr3R	4211662	4211695	mdg3	7	5646	6.5	2.0	4.2	1.3	5679	chr3R	4206016	intron	CG14636 -	chr3R	4208856	intron	CG14636 -	chr3R	4211695	intron	CG14636 -	chr3R_7_4205001	chr3R_4205001	CK2_1-HE
2424	chr3R	4366698	4366778	chr3R	4375151	4375232	roo	26	8454	9.0	8.0	8.5	2.7	8534	chr3R	4366698	3` UTR	CG1090 +	chr3R	4370965	intergenic	not near genes	chr3R	4375232	5` UTR	CR44922 +	chr3R_26_4370001	chr3R_4370001	CK2_1-HE
2425	chr3R	4408354	4408425	chr3R	4412729	4412800	Juan	19	4375	7.5	5.5	6.5	2.5	4446	chr3R	4408354	intron	CG32944 -	chr3R	4410577	intron	CG32944 -	chr3R	4412800	intron	CG32944 -	chr3R_19_4410001	chr3R_4410001	CK2_1-HE
2427	chr3R	4609490	4609497	chr3R	4610725	4610732	1360	4	1235	23.0	10.0	16.5	0.2	1242	chr3R	4609490	intergenic	not near genes	chr3R	4610111	intergenic	not near genes	chr3R	4610732	intergenic	not near genes	chr3R_4_4610001	chr3R_4610001	CK2_1-HE
2428	chr3R	4609499	4609567	chr3R	4610717	4610802	1360	23	1232	14.5	8.0	11.2	1.9	1303	chr3R	4609499	intergenic	not near genes	chr3R	4610150	intergenic	not near genes	chr3R	4610802	intergenic	not near genes	chr3R_23_4610001	chr3R_4610001	CK2_1-HE
2429	chr3R	4636543	4636622	chr3R	4637030	4637113	INE-1	31	490	8.5	7.0	7.8	3.5	570	chr3R	4636543	intergenic	not near genes	chr3R	4636828	intergenic	not near genes	chr3R	4637113	intergenic	not near genes	chr3R_31_4635001	chr3R_4635001	CK2_1-HE
2431	chr3R	4753188	4753224	chr3R	4757562	4757598	F-element	15	4373	17.0	14.5	15.8	0.9	4410	chr3R	4753188	intron,exon	atms +,CG44098 -	chr3R	4755393	intron,intron	atms +,CG44098 -	chr3R	4757598	intron,exon	atms +,CG44098 -	chr3R_15_4755001	chr3R_4755001	CK2_1-HE
2432	chr3R	4753225	4753258	chr3R	4757548	4757632	F-element	10	4366	10.5	11.5	11.0	0.8	4407	chr3R	4753225	intron,intron	atms +,CG44098 -	chr3R	4755428	intron,intron	atms +,CG44098 -	chr3R	4757632	intron,exon	atms +,CG44098 -	chr3R_10_4755001	chr3R_4755001	CK2_1-HE
2433	chr3R	4759661	4759732	chr3R	4761230	4761290	hopper2	13	1567	6.0	9.5	7.8	1.5	1629	chr3R	4759661	intron,intron	atms +,CG44098 -	chr3R	4760476	intron,intron	atms +,CG44098 -	chr3R	4761290	intron,intron	atms +,CG44098 -	chr3R_13_4760001	chr3R_4760001	CK2_1-HE
2438	chr3R	4887416	4887488	chr3R	4894864	4894936	rover	11	7441	8.0	8.0	8.0	1.2	7520	chr3R	4887416	intergenic	not near genes	chr3R	4891176	intergenic	not near genes	chr3R	4894936	intergenic	not near genes	chr3R_11_4890001	chr3R_4890001	CK2_1-HE
2443	chr3R	5045786	5045869	chr3R	5052959	5053042	HMS-Beagle	24	7173	9.0	3.5	6.2	3.3	7256	chr3R	5045786	3` UTR	CR43635 -	chr3R	5049414	intergenic	not near genes	chr3R	5053042	intergenic	CR45588 -	chr3R_24_5045001	chr3R_5045001	CK2_1-HE
2444	chr3R	5067926	5068002	chr3R	5073514	5073590	mdg3	31	5587	3.5	10.0	6.8	4.0	5664	chr3R	5067926	intergenic	not near genes	chr3R	5070758	intergenic	not near genes	chr3R	5073590	intergenic	not near genes	chr3R_31_5070001	chr3R_5070001	CK2_1-HE
2454	chr3R	5338341	5338414	chr3R	5343589	5343662	Rt1c	48	5246	22.0	21.0	21.5	2.1	5321	chr3R	5338341	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343662	intron	mtd -	chr3R_48_5340001	chr3R_5340001	CK2_1-HE
2455	chr3R	5445905	5445968	chr3R	5452436	5452499	Burdock	12	6531	4.5	9.0	6.8	1.5	6594	chr3R	5445905	intron	CG14669 +	chr3R	5449202	intron	CG14669 +	chr3R	5452499	intron	CG14669 +	chr3R_12_5445001	chr3R_5445001	CK2_1-HE
2458	chr3R	5746964	5747020	chr3R	5753226	5753281	diver	5	6258	2.5	3.5	3.0	1.2	6317	chr3R	5746964	intergenic	Madm +	chr3R	5750122	intergenic	not near genes	chr3R	5753281	intergenic	CG2091 -	chr3R_5_5750001	chr3R_5750001	CK2_1-HE
2460	chr3R	5809053	5809132	chr3R	5809365	5809444	pogo	30	310	6.5	4.5	5.5	4.6	391	chr3R	5809053	3` UTR	CG11000 +	chr3R	5809248	3` UTR	CG11000 +	chr3R	5809444	3` UTR	CG11000 +	chr3R_30_5805001	chr3R_5805001	CK2_1-HE
2461	chr3R	5822330	5822397	chr3R	5823568	5823635	1360	10	1238	4.5	7.5	6.0	1.4	1305	chr3R	5822330	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823635	3` UTR	CG2023 -	chr3R_10_5820001	chr3R_5820001	CK2_1-HE
2467	chr3R	5927506	5927572	chr3R	5927817	5927883	pogo	19	310	5.0	8.0	6.5	2.5	377	chr3R	5927506	intron	CG34113 -	chr3R	5927694	intron	CG34113 -	chr3R	5927883	intron	CG34113 -	chr3R_19_5925001	chr3R_5925001	CK2_1-HE
2469	chr3R	6015931	6015991	chr3R	6024477	6024563	Tirant	15	8569	6.5	6.5	6.5	2.0	8632	chr3R	6015931	intergenic	not near genes	chr3R	6020247	intergenic	not near genes	chr3R	6024563	intergenic	not near genes	chr3R_15_6020001	chr3R_6020001	CK2_1-HE
2473	chr3R	6121116	6121168	chr3R	6121372	6121457	BS	10	263	4.5	2.5	3.5	2.2	341	chr3R	6121116	intergenic	not near genes	chr3R	6121286	intergenic	not near genes	chr3R	6121457	intergenic	not near genes	chr3R_10_6120001	chr3R_6120001	CK2_1-HE
2474	chr3R	6158452	6158526	chr3R	6167106	6167166	Tirant	21	8651	14.5	11.0	12.8	1.5	8714	chr3R	6158452	intergenic	not near genes	chr3R	6162809	intergenic	not near genes	chr3R	6167166	intergenic	CG1077 +	chr3R_21_6160001	chr3R_6160001	CK2_1-HE
2476	chr3R	6175117	6175192	chr3R	6182460	6182508	HMS-Beagle2	15	7341	6.5	7.0	6.8	1.9	7391	chr3R	6175117	intergenic	Osi1 +	chr3R	6178812	intron	CR45194 +	chr3R	6182508	intergenic	CR45194 +	chr3R_15_6175001	chr3R_6175001	CK2_1-HE
2483	chr3R	6509968	6510033	chr3R	6515120	6515185	jockey	18	5152	5.5	4.5	5.0	3.0	5217	chr3R	6509968	intergenic	not near genes	chr3R	6512576	intergenic	not near genes	chr3R	6515185	intergenic	not near genes	chr3R_18_6510001	chr3R_6510001	CK2_1-HE
2490	chr3R	6737437	6737515	chr3R	6739295	6739373	Doc	23	1851	18.5	9.0	13.8	1.6	1936	chr3R	6737437	intron	pb -	chr3R	6738405	intron	pb -	chr3R	6739373	intron	pb -	chr3R_23_6735001	chr3R_6735001	CK2_1-HE
2515	chr3R	7558540	7558554	chr3R	7563275	7563286	Doc	6	4734	4.0	2.0	3.0	1.5	4746	chr3R	7558540	intergenic	not near genes	chr3R	7560913	intergenic	not near genes	chr3R	7563286	intergenic	not near genes	chr3R_6_7560001	chr3R_7560001	CK2_1-HE
2523	chr3R	7694521	7694600	chr3R	7713653	7713733	invader3	28	19132	3.5	10.0	6.8	3.6	19212	chr3R	7694521	3` UTR	Nlg1 +	chr3R	7704127	intergenic	not near genes	chr3R	7713733	intergenic	not near genes	chr3R_28_7700001	chr3R_7700001	CK2_1-HE
2525	chr3R	7729408	7729486	chr3R	7737416	7737495	Stalker2	58	8008	15.5	19.0	17.2	3.2	8087	chr3R	7729408	intergenic	not near genes	chr3R	7733452	intergenic	not near genes	chr3R	7737495	intergenic	not near genes	chr3R_58_7730001	chr3R_7730001	CK2_1-HE
2528	chr3R	7849590	7849663	chr3R	7850829	7850883	1360	8	1234	3.0	6.5	4.8	1.4	1293	chr3R	7849590	intron	CG34384 +	chr3R	7850236	intron	CG34384 +	chr3R	7850883	intron	CG34384 +	chr3R_8_7850001	chr3R_7850001	CK2_1-HE
2532	chr3R	7973260	7973325	chr3R	7974393	7974458	1360	18	1133	11.5	9.0	10.2	1.6	1198	chr3R	7973260	intergenic	not near genes	chr3R	7973859	intergenic	not near genes	chr3R	7974458	3` UTR	CD98hc -	chr3R_18_7970001	chr3R_7970001	CK2_1-HE
2536	chr3R	8090494	8090553	chr3R	8094042	8094101	297	12	3547	4.0	19.0	11.5	1.0	3607	chr3R	8090494	intergenic	CR44330 +	chr3R	8092298	intergenic	not near genes	chr3R	8094101	intergenic	CG7900 +	chr3R_12_8090001	chr3R_8090001	CK2_1-HE
2537	chr3R	8094360	8094417	chr3R	8099736	8099793	Transpac	12	5376	4.5	6.0	5.2	1.9	5433	chr3R	8094360	intron	CG7900 +	chr3R	8097076	intron	CG7900 +	chr3R	8099793	intron	CG7900 +	chr3R_12_8095001	chr3R_8095001	CK2_1-HE
2538	chr3R	8101699	8101720	chr3R	8104853	8104859	G2	5	3152	13.5	3.0	8.2	0.5	3160	chr3R	8101699	exon	CG7900 +	chr3R	8103279	intron	CG7900 +	chr3R	8104859	3` UTR	CG7900 +	chr3R_5_8100001	chr3R_8100001	CK2_1-HE
2539	chr3R	8101724	8101774	chr3R	8104848	8104929	G2	6	3150	6.0	3.0	4.5	1.1	3205	chr3R	8101724	exon	CG7900 +	chr3R	8103326	intron	CG7900 +	chr3R	8104929	3` UTR	CG7900 +	chr3R_6_8100001	chr3R_8100001	CK2_1-HE
2541	chr3R	8207502	8207573	chr3R	8208418	8208489	F-element	11	914	10.5	9.0	9.8	1.0	987	chr3R	8207502	intergenic	not near genes	chr3R	8207996	intergenic	not near genes	chr3R	8208489	intergenic	not near genes	chr3R_11_8205001	chr3R_8205001	CK2_1-HE
2544	chr3R	8402961	8402967	chr3R	8412194	8412204	roo	9	9236	47.0	20.0	33.5	0.3	9243	chr3R	8402961	intron	CG45263 -	chr3R	8407582	intron	CG45263 -	chr3R	8412204	intron	CG45263 -	chr3R_9_8405001	chr3R_8405001	CK2_1-HE
2545	chr3R	8402968	8403037	chr3R	8412183	8412222	roo	47	9231	23.5	16.0	19.8	2.3	9254	chr3R	8402968	intron	CG45263 -	chr3R	8407595	intron	CG45263 -	chr3R	8412222	intron	CG45263 -	chr3R_47_8405001	chr3R_8405001	CK2_1-HE
2550	chr3R	8570429	8570498	chr3R	8575136	8575205	HMS-Beagle	10	4704	7.5	6.0	6.8	1.3	4776	chr3R	8570429	intergenic	not near genes	chr3R	8572817	intergenic	not near genes	chr3R	8575205	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	CK2_1-HE
2553	chr3R	8601732	8601781	chr3R	8610956	8611005	roo	10	9221	8.5	6.5	7.5	1.2	9273	chr3R	8601732	intron	5-HT2B +	chr3R	8606368	intron	5-HT2B +	chr3R	8611005	intron	5-HT2B +	chr3R_10_8605001	chr3R_8605001	CK2_1-HE
2557	chr3R	8707308	8707359	chr3R	8709816	8709871	jockey	33	2511	16.5	9.5	13.0	2.4	2563	chr3R	8707308	intergenic	not near genes	chr3R	8708590	intergenic	not near genes	chr3R	8709871	intergenic	not near genes	chr3R_33_8705001	chr3R_8705001	CK2_1-HE
2559	chr3R	8898163	8898211	chr3R	8913814	8913866	297	17	15649	13.5	6.5	10.0	1.5	15703	chr3R	8898163	intron	pyd -	chr3R	8906014	intron	pyd -	chr3R	8913866	intron	pyd -	chr3R_17_8905001	chr3R_8905001	CK2_1-HE
2563	chr3R	9278726	9278813	chr3R	9284057	9284063	Rt1a	13	5322	6.5	12.5	9.5	1.2	5337	chr3R	9278726	intergenic	not near genes	chr3R	9281394	intergenic	not near genes	chr3R	9284063	intergenic	not near genes	chr3R_13_9280001	chr3R_9280001	CK2_1-HE
2564	chr3R	9319515	9319532	chr3R	9320021	9320038	jockey	11	506	20.5	12.0	16.2	0.6	523	chr3R	9319515	intron	CG8861 -	chr3R	9319776	intron	CG8861 -	chr3R	9320038	intron	CG8861 -	chr3R_11_9315001	chr3R_9315001	CK2_1-HE
2565	chr3R	9319537	9319585	chr3R	9320016	9320091	jockey	19	505	11.0	10.0	10.5	1.7	554	chr3R	9319537	intron	CG8861 -	chr3R	9319814	intron	CG8861 -	chr3R	9320091	intron	CG8861 -	chr3R_19_9315001	chr3R_9315001	CK2_1-HE
2568	chr3R	9699919	9699995	chr3R	9700079	9700155	1360	42	160	14.0	17.0	15.5	2.5	236	chr3R	9699919	intron	Unc-115a -	chr3R	9700037	intron	Unc-115a -	chr3R	9700155	intron	Unc-115a -	chr3R_42_9700001	chr3R_9700001	CK2_1-HE
2580	chr3R	10196890	10196923	chr3R	10202948	10202981	297	10	6058	14.5	8.0	11.2	0.8	6091	chr3R	10196890	exon	Syn +	chr3R	10199936	intron	Syn +	chr3R	10202981	intron	Syn +	chr3R_10_10195001	chr3R_10195001	CK2_1-HE
2581	chr3R	10231737	10231797	chr3R	10237385	10237445	mdg3	11	5647	0.5	5.5	3.0	2.8	5708	chr3R	10231737	intron	CG42795 +	chr3R	10234591	intron	CG42795 +	chr3R	10237445	intron	CG42795 +	chr3R_11_10230001	chr3R_10230001	CK2_1-HE
2582	chr3R	10255326	10255383	chr3R	10260837	10260894	I-element	7	5509	4.5	7.0	5.8	1.0	5568	chr3R	10255326	intergenic	Sirt6 -,CG3999 +	chr3R	10258110	intron	Sirt6 -	chr3R	10260894	exon	Sirt6 -	chr3R_7_10255001	chr3R_10255001	CK2_1-HE
2591	chr3R	10804141	10804179	chr3R	10811743	10811782	17.6	5	7602	1.5	5.5	3.5	1.1	7641	chr3R	10804141	intergenic	CG14692 -	chr3R	10807962	intergenic	not near genes	chr3R	10811782	3` UTR	CG14693 -	chr3R_5_10805001	chr3R_10805001	CK2_1-HE
2595	chr3R	10957826	10957861	chr3R	10963268	10963284	Rt1c	9	5437	22.0	5.5	13.8	0.6	5458	chr3R	10957826	intergenic	not near genes	chr3R	10960555	intergenic	not near genes	chr3R	10963284	intergenic	not near genes	chr3R_9_10960001	chr3R_10960001	CK2_1-HE
2596	chr3R	10957862	10957879	chr3R	10963267	10963309	Rt1c	12	5432	15.5	5.5	10.5	1.0	5447	chr3R	10957862	intergenic	not near genes	chr3R	10960586	intergenic	not near genes	chr3R	10963309	intergenic	not near genes	chr3R_12_10960001	chr3R_10960001	CK2_1-HE
2597	chr3R	10957881	10957885	chr3R	10963262	10963333	Rt1c	6	5428	15.0	5.0	10.0	0.5	5452	chr3R	10957881	intergenic	not near genes	chr3R	10960607	intergenic	not near genes	chr3R	10963333	intergenic	not near genes	chr3R_6_10960001	chr3R_10960001	CK2_1-HE
2604	chr3R	11247187	11247224	chr3R	11247339	11247375	INE-1	4	152	0.0	1.0	0.5	2.7	188	chr3R	11247187	intergenic	CG5214 +,CR43283 -	chr3R	11247281	intergenic	CR43283 -,CG5214 +	chr3R	11247375	intergenic	CR43283 -	chr3R_4_11245001	chr3R_11245001	CK2_1-HE
2609	chr3R	11379179	11379191	chr3R	11388402	11388417	roo	9	9225	14.0	18.5	16.2	0.5	9238	chr3R	11379179	intron	pros +	chr3R	11383798	intron	pros +	chr3R	11388417	intron	pros +	chr3R_9_11380001	chr3R_11380001	CK2_1-HE
2610	chr3R	11379195	11379212	chr3R	11388401	11388432	roo	9	9223	14.0	18.0	16.0	0.5	9237	chr3R	11379195	intron	pros +	chr3R	11383814	intron	pros +	chr3R	11388432	intron	pros +	chr3R_9_11380001	chr3R_11380001	CK2_1-HE
2623	chr3R	11841006	11841022	chr3R	11846268	11846284	BS	5	5260	22.5	8.0	15.2	0.3	5278	chr3R	11841006	intron	CG6959 -	chr3R	11843645	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_5_11840001	chr3R_11840001	CK2_1-HE
2624	chr3R	11841023	11841080	chr3R	11846259	11846342	BS	31	5253	12.5	7.0	9.8	2.9	5319	chr3R	11841023	intron	CG6959 -	chr3R	11843682	intron	CG6959 -	chr3R	11846342	intron	CG6959 -	chr3R_31_11840001	chr3R_11840001	CK2_1-HE
2626	chr3R	12022827	12022893	chr3R	12025075	12025141	pogo	19	2244	7.5	6.5	7.0	2.4	2314	chr3R	12022827	intergenic	not near genes	chr3R	12023984	intergenic	not near genes	chr3R	12025141	intergenic	not near genes	chr3R_19_12020001	chr3R_12020001	CK2_1-HE
2644	chr3R	12780208	12780303	chr3R	12780392	12780488	BS	17	183	6.0	7.0	6.5	2.3	280	chr3R	12780208	intron	beat-Vc -	chr3R	12780348	intron	beat-Vc -	chr3R	12780488	intron	beat-Vc -	chr3R_17_12780001	chr3R_12780001	CK2_1-HE
2657	chr3R	12920094	12920169	chr3R	12925368	12925442	copia	18	5271	10.0	8.0	9.0	1.8	5348	chr3R	12920094	intron	beat-Vb +	chr3R	12922768	intron	beat-Vb +	chr3R	12925442	intron	beat-Vb +	chr3R_18_12920001	chr3R_12920001	CK2_1-HE
2668	chr3R	13135772	13135841	chr3R	13138018	13138087	pogo	13	2246	8.5	6.0	7.2	1.6	2315	chr3R	13135772	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136930	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138087	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_13_13135001	chr3R_13135001	CK2_1-HE
2669	chr3R	13142980	13142999	chr3R	13148628	13148647	mdg3	5	5647	14.5	14.0	14.2	0.3	5667	chr3R	13142980	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145814	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148647	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	CK2_1-HE
2670	chr3R	13143000	13143049	chr3R	13148620	13148697	mdg3	10	5645	6.0	13.5	9.8	0.9	5697	chr3R	13143000	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145848	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148697	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_10_13145001	chr3R_13145001	CK2_1-HE
2677	chr3R	13517163	13517259	chr3R	13520049	13520146	jockey	7	2886	2.0	1.0	1.5	2.8	2983	chr3R	13517163	intergenic	not near genes	chr3R	13518654	intergenic	not near genes	chr3R	13520146	intergenic	not near genes	chr3R_7_13515001	chr3R_13515001	CK2_1-HE
2692	chr3R	14021591	14021670	chr3R	14023479	14023558	S-element	26	1888	10.5	8.5	9.5	2.5	1967	chr3R	14021591	intron	rdx -	chr3R	14022574	intron	rdx -	chr3R	14023558	intron	rdx -	chr3R_26_14020001	chr3R_14020001	CK2_1-HE
2698	chr3R	14180754	14180828	chr3R	14185590	14185664	F-element	29	4836	11.5	18.0	14.8	1.8	4910	chr3R	14180754	intron	Dop1R1 -	chr3R	14183209	intron	Dop1R1 -	chr3R	14185664	intron	Dop1R1 -	chr3R_29_14180001	chr3R_14180001	CK2_1-HE
2699	chr3R	14194376	14194378	chr3R	14203596	14203598	roo	4	9220	27.5	11.0	19.2	0.2	9222	chr3R	14194376	intron	Dop1R1 -	chr3R	14198987	intron	Dop1R1 -	chr3R	14203598	intron	Dop1R1 -	chr3R_4_14195001	chr3R_14195001	CK2_1-HE
2700	chr3R	14194379	14194452	chr3R	14203594	14203631	roo	26	9218	14.5	10.5	12.5	1.9	9252	chr3R	14194379	intron	Dop1R1 -	chr3R	14199005	intron	Dop1R1 -	chr3R	14203631	intron	Dop1R1 -	chr3R_26_14195001	chr3R_14195001	CK2_1-HE
2701	chr3R	14246343	14246372	chr3R	14247909	14247939	jockey	8	1562	9.5	4.0	6.8	1.0	1596	chr3R	14246343	intergenic	not near genes	chr3R	14247141	intergenic	not near genes	chr3R	14247939	intergenic	not near genes	chr3R_8_14245001	chr3R_14245001	CK2_1-HE
2702	chr3R	14246373	14246410	chr3R	14247893	14247976	jockey	9	1552	5.5	3.0	4.2	1.7	1603	chr3R	14246373	intergenic	not near genes	chr3R	14247174	intergenic	not near genes	chr3R	14247976	intergenic	not near genes	chr3R_9_14245001	chr3R_14245001	CK2_1-HE
2725	chr3R	15041353	15041417	chr3R	15045208	15045272	Doc	9	3854	0.0	5.0	2.5	2.6	3919	chr3R	15041353	intergenic	not near genes	chr3R	15043312	intergenic	not near genes	chr3R	15045272	intergenic	not near genes	chr3R_9_15040001	chr3R_15040001	CK2_1-HE
2726	chr3R	15059216	15059477	chr3R	15059479	15059635	BS	11	244	0.0	0.0	0.0	11.0	419	chr3R	15059216	intron	dpr9 -	chr3R	15059426	intron	dpr9 -	chr3R	15059635	intron	dpr9 -	chr3R_11_15055001	chr3R_15055001	CK2_1-HE
2730	chr3R	15079754	15079827	chr3R	15080065	15080138	pogo	16	312	9.0	8.0	8.5	1.7	384	chr3R	15079754	3` UTR	CG6966 -	chr3R	15079946	3` UTR	CG6966 -	chr3R	15080138	3` UTR	CG6966 -	chr3R_16_15075001	chr3R_15075001	CK2_1-HE
2733	chr3R	15102445	15102529	chr3R	15109774	15109854	412	17	7329	6.5	15.0	10.8	1.4	7409	chr3R	15102445	intron	CG42788 -	chr3R	15106150	intron	CG42788 -	chr3R	15109854	intron	CG42788 -	chr3R_17_15105001	chr3R_15105001	CK2_1-HE
2736	chr3R	15132007	15132078	chr3R	15135138	15135180	Juan	40	3129	12.5	20.5	16.5	2.3	3173	chr3R	15132007	intergenic	CG42788 -	chr3R	15133594	intergenic	not near genes	chr3R	15135180	3` UTR	CG6912 -	chr3R_40_15130001	chr3R_15130001	CK2_1-HE
2739	chr3R	15162488	15162563	chr3R	15167327	15167402	F-element	20	4839	10.5	5.0	7.8	2.3	4914	chr3R	15162488	intron	Gyc88E +	chr3R	15164945	intron	Gyc88E +	chr3R	15167402	intron	Gyc88E +	chr3R_20_15160001	chr3R_15160001	CK2_1-HE
2744	chr3R	15601116	15601186	chr3R	15608704	15608778	412	17	7593	14.5	19.0	16.8	1.0	7662	chr3R	15601116	intergenic	not near genes	chr3R	15604947	intergenic	not near genes	chr3R	15608778	intergenic	not near genes	chr3R_17_15600001	chr3R_15600001	CK2_1-HE
2745	chr3R	15618669	15618750	chr3R	15626208	15626278	blood	26	7543	8.0	9.5	8.8	2.7	7609	chr3R	15618669	intergenic	not near genes	chr3R	15622474	intergenic	not near genes	chr3R	15626278	intergenic	not near genes	chr3R_26_15620001	chr3R_15620001	CK2_1-HE
2750	chr3R	15735187	15735237	chr3R	15739978	15740027	F-element	31	4791	6.0	21.5	13.8	2.1	4840	chr3R	15735187	intergenic	not near genes	chr3R	15737607	intergenic	not near genes	chr3R	15740027	intergenic	not near genes	chr3R_31_15735001	chr3R_15735001	CK2_1-HE
2761	chr3R	16189346	16189430	chr3R	16189820	16189904	invader4	17	473	7.0	6.5	6.8	2.2	558	chr3R	16189346	intron	sra +	chr3R	16189625	intron	sra +	chr3R	16189904	intron	sra +	chr3R_17_16185001	chr3R_16185001	CK2_1-HE
2779	chr3R	16756260	16756331	chr3R	16762522	16762557	diver	20	6256	5.5	6.5	6.0	2.9	6297	chr3R	16756260	intron	bxd -	chr3R	16759408	intron	bxd -	chr3R	16762557	intron	bxd -	chr3R_20_16755001	chr3R_16755001	CK2_1-HE
2788	chr3R	17294632	17294702	chr3R	17295101	17295202	BS	14	501	2.5	2.0	2.2	4.4	570	chr3R	17294632	intergenic	not near genes	chr3R	17294917	intergenic	not near genes	chr3R	17295202	intergenic	not near genes	chr3R_14_17290001	chr3R_17290001	CK2_1-HE
2789	chr3R	17346619	17346682	chr3R	17348253	17348314	F-element	10	1634	5.5	6.0	5.8	1.5	1695	chr3R	17346619	intron	beat-IIa -	chr3R	17347466	intron	beat-IIa -	chr3R	17348314	intron	beat-IIa -	chr3R_10_17345001	chr3R_17345001	CK2_1-HE
2795	chr3R	17509186	17509253	chr3R	17516804	17516832	412	12	7604	3.0	11.0	7.0	1.5	7646	chr3R	17509186	intergenic	not near genes	chr3R	17513009	intergenic	not near genes	chr3R	17516832	intergenic	not near genes	chr3R_12_17510001	chr3R_17510001	CK2_1-HE
2799	chr3R	17591232	17591244	chr3R	17591739	17591751	F-element	4	506	16.5	5.5	11.0	0.3	519	chr3R	17591232	intergenic	not near genes	chr3R	17591492	intergenic	not near genes	chr3R	17591751	intergenic	not near genes	chr3R_4_17590001	chr3R_17590001	CK2_1-HE
2800	chr3R	17591247	17591276	chr3R	17591735	17591783	F-element	10	501	15.0	5.5	10.2	0.9	536	chr3R	17591247	intergenic	not near genes	chr3R	17591515	intergenic	not near genes	chr3R	17591783	intergenic	not near genes	chr3R_10_17590001	chr3R_17590001	CK2_1-HE
2801	chr3R	17638258	17638331	chr3R	17638811	17638888	roo	9	554	4.0	7.5	5.8	1.3	630	chr3R	17638258	intron	CG43175 +	chr3R	17638573	intron	CG43175 +	chr3R	17638888	intron,intron	CG43175 +,CR45222 +	chr3R_9_17635001	chr3R_17635001	CK2_1-HE
2818	chr3R	17925801	17925807	chr3R	17927339	17927345	hobo	4	1538	23.0	13.5	18.2	0.2	1544	chr3R	17925801	intron	cpo +	chr3R	17926573	intron	cpo +	chr3R	17927345	intron	cpo +	chr3R_4_17925001	chr3R_17925001	CK2_1-HE
2819	chr3R	17925815	17925828	chr3R	17927330	17927343	hobo	9	1531	20.0	11.5	15.8	0.5	1528	chr3R	17925815	intron	cpo +	chr3R	17926579	intron	cpo +	chr3R	17927343	intron	cpo +	chr3R_9_17925001	chr3R_17925001	CK2_1-HE
2820	chr3R	18032711	18032803	chr3R	18040455	18040547	opus	6	7743	1.0	6.0	3.5	1.3	7836	chr3R	18032711	intergenic	not near genes	chr3R	18036629	intergenic	not near genes	chr3R	18040547	intergenic	not near genes	chr3R_6_18035001	chr3R_18035001	CK2_1-HE
2825	chr3R	18061530	18061597	chr3R	18063167	18063236	F-element	14	1639	5.5	7.0	6.2	1.9	1706	chr3R	18061530	intergenic	not near genes	chr3R	18062383	intergenic	not near genes	chr3R	18063236	intergenic	not near genes	chr3R_14_18060001	chr3R_18060001	CK2_1-HE
2838	chr3R	18606459	18606520	chr3R	18610737	18610822	F-element	19	4302	8.0	3.5	5.8	2.8	4363	chr3R	18606459	intron,intron	qin +,CG14304 -	chr3R	18608640	intron,intron	qin +,CG14304 -	chr3R	18610822	intron,intron	qin +,CG14304 -	chr3R_19_18605001	chr3R_18605001	CK2_1-HE
2867	chr3R	19744185	19744210	chr3R	19749489	19749525	Rt1a	21	5315	35.0	21.0	28.0	0.7	5340	chr3R	19744185	intron,intron	GluClalpha +,CR43488 -	chr3R	19746855	intron	GluClalpha +	chr3R	19749525	intron	GluClalpha +	chr3R_21_19745001	chr3R_19745001	CK2_1-HE
2879	chr3R	20109485	20109568	chr3R	20114760	20114833	copia	8	5273	8.0	8.0	8.0	0.9	5348	chr3R	20109485	intergenic	not near genes	chr3R	20112159	intergenic	not near genes	chr3R	20114833	intergenic	CG10887 +	chr3R_8_20110001	chr3R_20110001	CK2_1-HE
2881	chr3R	20156631	20156709	chr3R	20165868	20165938	roo	17	9240	8.5	6.5	7.5	2.0	9307	chr3R	20156631	intergenic	not near genes	chr3R	20161284	intergenic	not near genes	chr3R	20165938	intergenic	not near genes	chr3R_17_20160001	chr3R_20160001	CK2_1-HE
2891	chr3R	20266456	20266488	chr3R	20272998	20273030	Burdock	10	6541	17.0	12.0	14.5	0.6	6574	chr3R	20266456	intron	cic +	chr3R	20269743	intron	cic +	chr3R	20273030	intron	cic +	chr3R_10_20265001	chr3R_20265001	CK2_1-HE
2892	chr3R	20266490	20266534	chr3R	20272991	20273076	Burdock	24	6539	7.0	11.5	9.2	2.4	6586	chr3R	20266490	intron	cic +	chr3R	20269783	intron	cic +	chr3R	20273076	intron	cic +	chr3R_24_20265001	chr3R_20265001	CK2_1-HE
2896	chr3R	20330938	20330999	chr3R	20331495	20331556	roo	11	557	5.0	3.5	4.2	2.1	618	chr3R	20330938	intergenic	Sirt2 +	chr3R	20331247	intergenic	Sirt2 +	chr3R	20331556	intergenic	not near genes	chr3R_11_20330001	chr3R_20330001	CK2_1-HE
2905	chr3R	20506509	20506594	chr3R	20507394	20507446	BS	16	876	6.0	11.5	8.8	1.6	937	chr3R	20506509	intergenic	Or92a +	chr3R	20506978	intergenic	CG4288 -	chr3R	20507446	3` UTR	CG4288 -	chr3R_16_20505001	chr3R_20505001	CK2_1-HE
2906	chr3R	20512937	20512999	chr3R	20515711	20515773	opus	4	2774	6.5	0.0	3.2	1.0	2836	chr3R	20512937	intergenic	CG4288 -	chr3R	20514355	intergenic	not near genes	chr3R	20515773	intergenic	not near genes	chr3R_4_20510001	chr3R_20510001	CK2_1-HE
2922	chr3R	20854425	20854502	chr3R	20859287	20859345	Doc	8	4852	1.0	6.0	3.5	1.8	4920	chr3R	20854425	intron	Ir93a -	chr3R	20856885	intron	Ir93a -	chr3R	20859345	exon	Ir93a -	chr3R_8_20855001	chr3R_20855001	CK2_1-HE
2931	chr3R	21141616	21141684	chr3R	21150168	21150235	Tirant	5	8549	6.0	3.5	4.8	0.9	8619	chr3R	21141616	intron	SNF4Agamma +	chr3R	21145926	intron	SNF4Agamma +	chr3R	21150235	intron	SNF4Agamma +	chr3R_5_21145001	chr3R_21145001	CK2_1-HE
2952	chr3R	21761059	21761145	chr3R	21768522	21768581	mdg1	25	7457	9.0	10.0	9.5	2.4	7522	chr3R	21761059	exon	CG42335 +	chr3R	21764820	intron	CG42335 +	chr3R	21768581	exon	CG42335 +	chr3R_25_21760001	chr3R_21760001	CK2_1-HE
2966	chr3R	22234624	22234709	chr3R	22236014	22236099	pogo	27	1390	7.5	4.5	6.0	3.9	1475	chr3R	22234624	intron	SKIP +	chr3R	22235362	intron	SKIP +	chr3R	22236099	intron	SKIP +	chr3R_27_22235001	chr3R_22235001	CK2_1-HE
2967	chr3R	22239437	22239502	chr3R	22248568	22248632	roo	6	9131	6.5	7.0	6.8	0.8	9195	chr3R	22239437	intron	SKIP +	chr3R	22244034	intron	SKIP +	chr3R	22248632	intron	SKIP +	chr3R_6_22240001	chr3R_22240001	CK2_1-HE
2972	chr3R	22450500	22450564	chr3R	22453198	22453273	NOF	27	2707	14.0	15.0	14.5	1.7	2773	chr3R	22450500	intron	CG34376 +	chr3R	22451886	intron	CG34376 +	chr3R	22453273	intron	CG34376 +	chr3R_27_22450001	chr3R_22450001	CK2_1-HE
2980	chr3R	22881202	22881216	chr3R	22884979	22884993	Doc	5	3777	2.5	12.5	7.5	0.6	3791	chr3R	22881202	intergenic	not near genes	chr3R	22883098	intergenic	not near genes	chr3R	22884993	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	CK2_1-HE
3003	chr3R	23558280	23558426	chr3R	23560179	23560279	Bari1	16	1889	0.0	3.5	1.8	5.7	1999	chr3R	23558280	intron	beat-IV +	chr3R	23559280	intron	beat-IV +	chr3R	23560279	intron	beat-IV +	chr3R_16_23555001	chr3R_23555001	CK2_1-HE
3013	chr3R	23684631	23684666	chr3R	23685187	23685223	roo	7	555	18.5	12.5	15.5	0.4	592	chr3R	23684631	exon	CG18754 +	chr3R	23684927	intron	CG18754 +	chr3R	23685223	exon	CG18754 +	chr3R_7_23680001	chr3R_23680001	CK2_1-HE
3014	chr3R	23684670	23684711	chr3R	23685186	23685268	roo	23	550	11.0	12.5	11.8	1.8	598	chr3R	23684670	exon	CG18754 +	chr3R	23684969	intron	CG18754 +	chr3R	23685268	exon	CG18754 +	chr3R_23_23680001	chr3R_23680001	CK2_1-HE
3019	chr3R	23835352	23835402	chr3R	23844573	23844623	roo	15	9220	9.5	1.0	5.2	2.4	9271	chr3R	23835352	intron	CG34355 +	chr3R	23839988	intron	CG34355 +	chr3R	23844623	intron	CG34355 +	chr3R_15_23835001	chr3R_23835001	CK2_1-HE
3028	chr3R	24072030	24072122	chr3R	24072528	24072609	jockey	32	502	15.0	0.5	7.8	3.6	579	chr3R	24072030	intron	4EHP -	chr3R	24072320	intron	4EHP -	chr3R	24072609	intron	4EHP -	chr3R_32_24070001	chr3R_24070001	CK2_1-HE
3030	chr3R	24076860	24076935	chr3R	24078398	24078473	hobo	18	1537	2.0	8.5	5.2	2.9	1613	chr3R	24076860	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078473	intron	4EHP -	chr3R_18_24075001	chr3R_24075001	CK2_1-HE
3033	chr3R	24207156	24207240	chr3R	24212303	24212386	flea	20	5147	0.5	3.0	1.8	7.1	5230	chr3R	24207156	intron	twin -	chr3R	24209771	intron	twin -	chr3R	24212386	intron	twin -	chr3R_20_24205001	chr3R_24205001	CK2_1-HE
3038	chr3R	24493223	24493293	chr3R	24493523	24493593	BS	37	299	12.5	17.0	14.8	2.3	370	chr3R	24493223	intergenic	not near genes	chr3R	24493408	intergenic	not near genes	chr3R	24493593	intergenic	not near genes	chr3R_37_24490001	chr3R_24490001	CK2_1-HE
3041	chr3R	24730042	24730057	chr3R	24732491	24732499	Doc	4	2447	10.5	0.0	5.2	0.6	2457	chr3R	24730042	intron	tok +	chr3R	24731270	intron	tok +	chr3R	24732499	intron	tok +	chr3R_4_24730001	chr3R_24730001	CK2_1-HE
3044	chr3R	24927070	24927149	chr3R	24931932	24932011	Doc	14	4861	5.0	4.5	4.8	2.4	4941	chr3R	24927070	3` UTR	Trf4-2 +	chr3R	24929540	intergenic	not near genes	chr3R	24932011	5` UTR	CG11771 +	chr3R_14_24925001	chr3R_24925001	CK2_1-HE
3068	chr3R	25725777	25725850	chr3R	25735008	25735060	roo	21	9230	4.5	7.0	5.8	3.1	9283	chr3R	25725777	intron	LpR2 -	chr3R	25730418	intron	LpR2 -	chr3R	25735060	intron	LpR2 -	chr3R_21_25730001	chr3R_25730001	CK2_1-HE
3070	chr3R	25832651	25832712	chr3R	25841887	25841949	roo	18	9248	11.0	11.0	11.0	1.5	9298	chr3R	25832651	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841949	exon	alpha4GT2 +	chr3R_18_25835001	chr3R_25835001	CK2_1-HE
3086	chr3R	26376261	26376356	chr3R	26385492	26385601	roo	30	9238	5.5	0.0	2.8	7.9	9340	chr3R	26376261	intergenic	not near genes	chr3R	26380931	intergenic	not near genes	chr3R	26385601	intergenic	not near genes	chr3R_30_26380001	chr3R_26380001	CK2_1-HE
3092	chr3R	26510445	26510521	chr3R	26519577	26519653	roo	30	9132	9.5	10.5	10.0	2.7	9208	chr3R	26510445	intron	plum -	chr3R	26515049	intron	plum -	chr3R	26519653	intron,5` UTR	plum -,CR45226 +	chr3R_30_26515001	chr3R_26515001	CK2_1-HE
3093	chr3R	26558265	26558309	chr3R	26565646	26565693	Stalker4	22	7383	28.5	10.0	19.2	1.1	7428	chr3R	26558265	intron	scrib +	chr3R	26561979	intron	scrib +	chr3R	26565693	intron	scrib +	chr3R_22_26560001	chr3R_26560001	CK2_1-HE
3094	chr3R	26558310	26558352	chr3R	26565643	26565701	Stalker4	12	7360	13.0	9.5	11.2	1.0	7391	chr3R	26558310	intron	scrib +	chr3R	26562006	intron	scrib +	chr3R	26565701	intron	scrib +	chr3R_12_26560001	chr3R_26560001	CK2_1-HE
3099	chr3R	26642650	26642728	chr3R	26643125	26643204	jockey	11	473	5.0	3.5	4.2	2.1	554	chr3R	26642650	intergenic	not near genes	chr3R	26642927	intergenic	not near genes	chr3R	26643204	intergenic	not near genes	chr3R_11_26640001	chr3R_26640001	CK2_1-HE
3103	chr3R	26810496	26810570	chr3R	26811052	26811126	roo	19	555	7.5	11.0	9.2	1.9	630	chr3R	26810496	intron	Tl +	chr3R	26810811	intron	Tl +	chr3R	26811126	intron	Tl +	chr3R_19_26810001	chr3R_26810001	CK2_1-HE
3106	chr3R	27007353	27007425	chr3R	27016548	27016631	roo	27	9205	13.5	14.0	13.8	1.8	9278	chr3R	27007353	intron	RYa-R +	chr3R	27011992	intron	RYa-R +	chr3R	27016631	intron	RYa-R +	chr3R_27_27010001	chr3R_27010001	CK2_1-HE
3114	chr3R	27140466	27140468	chr3R	27148138	27148148	412	7	7678	30.0	25.5	27.8	0.2	7682	chr3R	27140466	intron	CG6051 -	chr3R	27144307	intron	CG6051 -	chr3R	27148148	intron	CG6051 -	chr3R_7_27140001	chr3R_27140001	CK2_1-HE
3115	chr3R	27140470	27140537	chr3R	27148134	27148196	412	40	7677	12.5	23.5	18.0	2.1	7726	chr3R	27140470	intron	CG6051 -	chr3R	27144333	intron	CG6051 -	chr3R	27148196	intron	CG6051 -	chr3R_40_27140001	chr3R_27140001	CK2_1-HE
3120	chr3R	27342737	27342820	chr3R	27351386	27351472	Tirant	16	8651	8.5	5.5	7.0	2.0	8735	chr3R	27342737	intron	CG42534 +	chr3R	27347104	intron	CG42534 +	chr3R	27351472	intron	CG42534 +	chr3R_16_27345001	chr3R_27345001	CK2_1-HE
3138	chr3R	27725560	27725588	chr3R	27731067	27731102	I-element	7	5513	2.5	11.0	6.8	0.9	5542	chr3R	27725560	intergenic	not near genes	chr3R	27728331	intergenic	not near genes	chr3R	27731102	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	CK2_1-HE
3146	chr3R	27856698	27856776	chr3R	27858252	27858330	hopper2	41	1553	21.5	10.0	15.8	2.4	1632	chr3R	27856698	intron	CG34353 -	chr3R	27857514	intron	CG34353 -	chr3R	27858330	intron	CG34353 -	chr3R_41_27855001	chr3R_27855001	CK2_1-HE
3147	chr3R	27862897	27862976	chr3R	27868259	27868352	Transpac	19	5373	0.0	7.5	3.8	4.0	5455	chr3R	27862897	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868352	intron	CG34353 -	chr3R_19_27865001	chr3R_27865001	CK2_1-HE
3152	chr3R	27875645	27875719	chr3R	27882771	27882829	297	29	7125	14.0	14.5	14.2	1.9	7184	chr3R	27875645	intron	CG34353 -	chr3R	27879237	intron	CG34353 -	chr3R	27882829	intron	CG34353 -	chr3R_29_27875001	chr3R_27875001	CK2_1-HE
3155	chr3R	28068428	28068508	chr3R	28073941	28074021	I-element	8	5511	0.0	2.5	1.2	3.6	5593	chr3R	28068428	intron	CG34362 +	chr3R	28071224	intron	CG34362 +	chr3R	28074021	intron	CG34362 +	chr3R_8_28070001	chr3R_28070001	CK2_1-HE
3159	chr3R	28173638	28173682	chr3R	28181139	28181183	mdg1	7	7501	3.0	3.0	3.0	1.8	7545	chr3R	28173638	intron	CG34354 +	chr3R	28177410	intron	CG34354 +	chr3R	28181183	intron	CG34354 +	chr3R_7_28175001	chr3R_28175001	CK2_1-HE
3160	chr3R	28253280	28253352	chr3R	28255861	28255933	jockey	17	2577	14.5	9.0	11.8	1.3	2653	chr3R	28253280	intergenic	not near genes	chr3R	28254606	intergenic	not near genes	chr3R	28255933	intergenic	not near genes	chr3R_17_28250001	chr3R_28250001	CK2_1-HE
3161	chr3R	28302051	28302110	chr3R	28302560	28302620	jockey	20	509	9.5	11.5	10.5	1.7	569	chr3R	28302051	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302620	intergenic	not near genes	chr3R_20_28300001	chr3R_28300001	CK2_1-HE
3182	chr3R	28758227	28758234	chr3R	28763915	28763922	roo	5	5688	21.5	0.0	10.8	0.4	5695	chr3R	28758227	exon	aqrs -	chr3R	28761074	intergenic	not near genes	chr3R	28763922	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	CK2_1-HE
3183	chr3R	28758251	28758295	chr3R	28771329	28771373	Stalker4	8	13078	11.0	3.5	7.2	1.0	13122	chr3R	28758251	intergenic	aqrs -	chr3R	28764812	intergenic	not near genes	chr3R	28771373	intergenic	not near genes	chr3R_8_28760001	chr3R_28760001	CK2_1-HE
3184	chr3R	28763911	28763918	chr3R	28771425	28771432	Stalker4	4	7514	0.0	19.0	9.5	0.4	7521	chr3R	28763911	intergenic	not near genes	chr3R	28767672	intergenic	not near genes	chr3R	28771432	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	CK2_1-HE
3185	chr3R	28792808	28792885	chr3R	28797973	28798055	jockey	9	5163	4.5	2.0	3.2	2.1	5247	chr3R	28792808	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28798055	intergenic	not near genes	chr3R_9_28795001	chr3R_28795001	CK2_1-HE
3194	chr3R	29079337	29079408	chr3R	29080779	29080851	NOF	12	1443	2.0	17.5	9.8	1.1	1514	chr3R	29079337	intron	CG11873 +	chr3R	29080094	intron	CG11873 +	chr3R	29080851	intron	CG11873 +	chr3R_12_29080001	chr3R_29080001	CK2_1-HE
3199	chr3R	29319764	29319838	chr3R	29320154	29320228	jockey	8	390	5.0	6.5	5.8	1.2	464	chr3R	29319764	intergenic	Cnx99A -	chr3R	29319996	intergenic	Cnx99A -	chr3R	29320228	intergenic	not near genes	chr3R_8_29315001	chr3R_29315001	CK2_1-HE
3205	chr3R	29406570	29406619	chr3R	29407921	29407976	jockey	11	1349	14.0	7.5	10.8	0.9	1406	chr3R	29406570	intron	Ptp99A +	chr3R	29407273	intron	Ptp99A +	chr3R	29407976	intron	Ptp99A +	chr3R_11_29405001	chr3R_29405001	CK2_1-HE
3216	chr3R	29738210	29738271	chr3R	29739740	29739778	hobo	11	1529	2.5	5.0	3.8	2.3	1568	chr3R	29738210	intergenic	CG1969 +,CG7598 +	chr3R	29738994	intron	CG1969 +	chr3R	29739778	5` UTR	CG1969 +	chr3R_11_29735001	chr3R_29735001	CK2_1-HE
3218	chr3R	29760309	29760369	chr3R	29761580	29761641	pogo	8	1272	8.5	7.5	8.0	0.9	1332	chr3R	29760309	intergenic	not near genes	chr3R	29760975	intergenic	not near genes	chr3R	29761641	intergenic	not near genes	chr3R_8_29760001	chr3R_29760001	CK2_1-HE
3222	chr3R	29881970	29882019	chr3R	29891198	29891247	roo	15	9226	10.0	8.0	9.0	1.5	9277	chr3R	29881970	intron	CG31038 +	chr3R	29886608	intron	CG31038 +	chr3R	29891247	intron	CG31038 +	chr3R_15_29885001	chr3R_29885001	CK2_1-HE
3231	chr3R	30084792	30084871	chr3R	30086317	30086399	hobo	5	1533	0.0	7.0	3.5	1.1	1607	chr3R	30084792	intron	sima +	chr3R	30085596	intron	sima +	chr3R	30086399	intron	sima +	chr3R_5_30085001	chr3R_30085001	CK2_1-HE
3234	chr3R	30238702	30238782	chr3R	30239937	30240017	1360	16	1234	2.5	3.5	3.0	4.0	1315	chr3R	30238702	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30240017	intergenic	not near genes	chr3R_16_30235001	chr3R_30235001	CK2_1-HE
3241	chr3R	30317318	30317356	chr3R	30324959	30325006	roo	10	7658	0.0	9.5	4.8	1.7	7688	chr3R	30317318	intron	hdc +	chr3R	30321162	intron	hdc +	chr3R	30325006	intron	hdc +	chr3R_10_30320001	chr3R_30320001	CK2_1-HE
3244	chr3R	30396159	30396218	chr3R	30404490	30404555	roo	15	8336	6.0	6.5	6.2	2.1	8396	chr3R	30396159	intergenic	not near genes	chr3R	30400357	intergenic	not near genes	chr3R	30404555	5` UTR	CR45570 +	chr3R_15_30400001	chr3R_30400001	CK2_1-HE
3252	chr3R	30480420	30480438	chr3R	30482959	30482965	jockey	4	2536	17.0	8.5	12.8	0.3	2545	chr3R	30480420	intron	PH4alphaEFB +	chr3R	30481692	intron	PH4alphaEFB +	chr3R	30482965	intron	PH4alphaEFB +	chr3R_4_30480001	chr3R_30480001	CK2_1-HE
3253	chr3R	30480440	30480484	chr3R	30482958	30483023	jockey	11	2535	9.5	8.5	9.0	1.1	2583	chr3R	30480440	intron	PH4alphaEFB +	chr3R	30481732	intron	PH4alphaEFB +	chr3R	30483023	intron	PH4alphaEFB +	chr3R_11_30480001	chr3R_30480001	CK2_1-HE
3262	chr3R	30679476	30679551	chr3R	30687016	30687091	blood	26	7540	5.0	7.0	6.0	3.7	7615	chr3R	30679476	intergenic	not near genes	chr3R	30683284	intergenic	not near genes	chr3R	30687091	intergenic	not near genes	chr3R_26_30680001	chr3R_30680001	CK2_1-HE
3270	chr3R	30818759	30818834	chr3R	30820395	30820445	1360	15	1631	0.0	9.5	4.8	2.6	1686	chr3R	30818759	intron	cindr +	chr3R	30819602	intron	cindr +	chr3R	30820445	intron	cindr +	chr3R_15_30815001	chr3R_30815001	CK2_1-HE
3289	chr3R	31279321	31279357	chr3R	31285583	31285619	diver	5	6262	7.0	9.5	8.2	0.5	6298	chr3R	31279321	intergenic	not near genes	chr3R	31282470	intergenic	not near genes	chr3R	31285619	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	CK2_1-HE
3290	chr3R	31279381	31279409	chr3R	31285570	31285627	diver	6	6242	3.0	8.5	5.8	0.9	6246	chr3R	31279381	intergenic	not near genes	chr3R	31282504	intergenic	not near genes	chr3R	31285627	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	CK2_1-HE
3291	chr3R	31330380	31330406	chr3R	31335653	31335679	copia	5	5273	11.0	7.0	9.0	0.5	5299	chr3R	31330380	intron	CG34347 +	chr3R	31333030	intron	CG34347 +	chr3R	31335679	intron	CG34347 +	chr3R_5_31330001	chr3R_31330001	CK2_1-HE
3296	chr3R	31413031	31413115	chr3R	31418302	31418386	copia	12	5271	2.0	4.0	3.0	3.0	5355	chr3R	31413031	intron	Gprk2 +	chr3R	31415708	intron	Gprk2 +	chr3R	31418386	intron	Gprk2 +	chr3R_12_31415001	chr3R_31415001	CK2_1-HE
3311	chr3R	31691469	31691554	chr3R	31696306	31696391	Doc	24	4834	9.5	10.5	10.0	2.2	4922	chr3R	31691469	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696391	intergenic	not near genes	chr3R_24_31690001	chr3R_31690001	CK2_1-HE
3330	chr3R	31997933	31997948	chr3R	32005474	32005489	blood	5	7541	16.0	3.5	9.8	0.5	7556	chr3R	31997933	intron	heph -	chr3R	32001711	intron	heph -	chr3R	32005489	intron	heph -	chr3R_5_32000001	chr3R_32000001	CK2_1-HE
3331	chr3R	31997949	31998014	chr3R	32005468	32005537	blood	27	7539	5.0	2.5	3.8	5.6	7588	chr3R	31997949	intron	heph -	chr3R	32001743	intron	heph -	chr3R	32005537	intron	heph -	chr3R_27_32000001	chr3R_32000001	CK2_1-HE
3336	chr4	76442	76491	chr4	81956	82005	I-element	11	5513	11.0	4.0	7.5	1.3	5563	chr4	76442	intron	pan +	chr4	79224	intron	pan +	chr4	82005	intron	pan +	chr4_11_75001	chr4_75001	CK2_1-HE
3338	chr4	671555	671611	chr4	680209	680263	Tirant	19	8652	13.0	15.5	14.2	1.2	8708	chr4	671555	intron	CG11360 +	chr4	675909	intron	CG11360 +	chr4	680263	intron	CG11360 +	chr4_19_675001	chr4_675001	CK2_1-HE
3339	chr4	671612	671619	chr4	680204	680273	Tirant	4	8638	12.0	14.5	13.2	0.3	8661	chr4	671612	intron	CG11360 +	chr4	675942	intron	CG11360 +	chr4	680273	intron	CG11360 +	chr4_4_675001	chr4_675001	CK2_1-HE
3343	chr4	1135860	1135955	chr4	1136188	1136260	INE-1	12	311	29.5	36.5	33.0	0.4	400	chr4	1135860	3` UTR	CG11155 +	chr4	1136060	3` UTR	CG11155 +	chr4	1136260	3` UTR	CG11155 +	chr4_12_1135001	chr4_1135001	CK2_1-HE
3346	chrX	295797	295872	chrX	303488	303563	412	29	7690	7.5	11.0	9.2	2.8	7766	chrX	295797	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303563	intron	CG3777 +	chrX_29_295001	chrX_295001	CK2_1-HE
3347	chrX	318417	318485	chrX	323574	323642	flea	34	5157	10.0	16.0	13.0	2.4	5225	chrX	318417	intron,intron	CG3777 +,CG32816 -	chrX	321030	intron,intron	CG3777 +,CG32816 -	chrX	323642	intron,intron	CG3777 +,CG32816 -	chrX_34_320001	chrX_320001	CK2_1-HE
3349	chrX	428367	428434	chrX	434622	434690	3S18	17	6255	7.0	7.0	7.0	2.1	6323	chrX	428367	intron	CG32816 -	chrX	431528	intron	CG32816 -	chrX	434690	intron	CG32816 -	chrX_17_430001	chrX_430001	CK2_1-HE
3356	chrX	551364	551376	chrX	558997	559004	412	8	7632	24.0	9.5	16.8	0.4	7640	chrX	551364	intron	Appl +	chrX	555184	intron	Appl +	chrX	559004	intron	Appl +	chrX_8_555001	chrX_555001	CK2_1-HE
3357	chrX	551379	551454	chrX	558993	559069	412	18	7624	8.5	8.0	8.2	2.0	7690	chrX	551379	intron	Appl +	chrX	555224	intron	Appl +	chrX	559069	intron	Appl +	chrX_18_555001	chrX_555001	CK2_1-HE
3365	chrX	827571	827629	chrX	835428	835486	roo	6	7857	5.0	7.0	6.0	0.9	7915	chrX	827571	intron	CG43867 -	chrX	831528	intron	CG43867 -	chrX	835486	intron	CG43867 -	chrX_6_830001	chrX_830001	CK2_1-HE
3367	chrX	906633	906719	chrX	908493	908579	S-element	36	1859	9.0	13.0	11.0	3.0	1946	chrX	906633	intron	CG43867 -	chrX	907606	intron	CG43867 -	chrX	908579	intron	CG43867 -	chrX_36_905001	chrX_905001	CK2_1-HE
3369	chrX	1033291	1033323	chrX	1040995	1041027	412	8	7704	17.0	7.0	12.0	0.6	7736	chrX	1033291	intron	su(w[a]) +	chrX	1037159	intron	su(w[a]) +	chrX	1041027	intron	su(w[a]) +	chrX_8_1035001	chrX_1035001	CK2_1-HE
3371	chrX	1357716	1357793	chrX	1367957	1368034	Doc	25	10240	11.0	11.5	11.2	2.0	10318	chrX	1357716	intergenic	png -	chrX	1362875	intergenic	not near genes	chrX	1368034	intergenic	not near genes	chrX_25_1360001	chrX_1360001	CK2_1-HE
3372	chrX	1518001	1518048	chrX	1523447	1523499	jockey	7	5466	2.5	3.5	3.0	1.8	5498	chrX	1518001	intergenic	inc +	chrX	1520750	intergenic	not near genes	chrX	1523499	intergenic	not near genes	chrX_7_1520001	chrX_1520001	CK2_1-HE
3377	chrX	1737106	1737132	chrX	1746340	1746347	roo	9	9226	16.0	30.5	23.2	0.4	9241	chrX	1737106	3` UTR	Scgdelta -	chrX	1741726	intron	Scgdelta -	chrX	1746347	3` UTR	Scgdelta -	chrX_9_1740001	chrX_1740001	CK2_1-HE
3379	chrX	1930489	1930552	chrX	1938114	1938194	opus	13	7640	1.5	1.5	1.5	5.2	7705	chrX	1930489	3` UTR	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938194	3` UTR	CG3857 -	chrX_13_1930001	chrX_1930001	CK2_1-HE
3380	chrX	1954828	1954882	chrX	1962839	1962893	Stalker2	4	8005	6.0	6.0	6.0	0.6	8065	chrX	1954828	intron	Hr4 +	chrX	1958860	intron	Hr4 +	chrX	1962893	intron	Hr4 +	chrX_4_1955001	chrX_1955001	CK2_1-HE
3389	chrX	2308779	2308817	chrX	2317432	2317448	Tirant	10	8651	11.5	11.5	11.5	0.8	8669	chrX	2308779	intron	phl +	chrX	2313114	intron	phl +	chrX	2317448	intron	phl +	chrX_10_2310001	chrX_2310001	CK2_1-HE
3391	chrX	2399792	2399857	chrX	2408198	2408266	roo	15	8410	10.5	2.0	6.2	2.1	8474	chrX	2399792	intergenic	not near genes	chrX	2404029	intergenic	not near genes	chrX	2408266	intergenic	not near genes	chrX_15_2400001	chrX_2400001	CK2_1-HE
3392	chrX	2399859	2399870	chrX	2408194	2408282	roo	4	8382	8.0	1.5	4.8	0.7	8423	chrX	2399859	intergenic	not near genes	chrX	2404070	intergenic	not near genes	chrX	2408282	intergenic	not near genes	chrX_4_2400001	chrX_2400001	CK2_1-HE
3395	chrX	2664326	2664403	chrX	2665543	2665620	1360	41	1217	13.0	15.5	14.2	2.7	1294	chrX	2664326	intron	sgg +	chrX	2664973	intron	sgg +	chrX	2665620	intron	sgg +	chrX_41_2660001	chrX_2660001	CK2_1-HE
3399	chrX	2823738	2823779	chrX	2832357	2832398	roo	8	8619	8.0	10.0	9.0	0.8	8660	chrX	2823738	intron	kirre +	chrX	2828068	intron	kirre +	chrX	2832398	intron	kirre +	chrX_8_2825001	chrX_2825001	CK2_1-HE
3402	chrX	2844846	2844919	chrX	2852326	2852400	mdg1	31	7481	4.0	12.0	8.0	3.4	7554	chrX	2844846	intron	kirre +	chrX	2848623	intron	kirre +	chrX	2852400	intron	kirre +	chrX_31_2845001	chrX_2845001	CK2_1-HE
3405	chrX	3057962	3058019	chrX	3058274	3058331	pogo	15	312	7.5	5.0	6.2	2.1	369	chrX	3057962	intron	kirre +	chrX	3058146	intron	kirre +	chrX	3058331	intron	kirre +	chrX_15_3055001	chrX_3055001	CK2_1-HE
3406	chrX	3075571	3075649	chrX	3080950	3081026	Transpac	4	5378	3.5	1.0	2.2	1.2	5455	chrX	3075571	intron	kirre +	chrX	3078298	intron	kirre +	chrX	3081026	intron	kirre +	chrX_4_3075001	chrX_3075001	CK2_1-HE
3421	chrX	3493037	3493095	chrX	3502265	3502322	roo	10	9224	4.5	0.5	2.5	2.9	9285	chrX	3493037	intron,exon	CR44999 +,Gas8 -	chrX	3497680	intron,intron	CR44999 +,Gas8 -	chrX	3502322	intron,intron	CR44999 +,Gas8 -	chrX_10_3495001	chrX_3495001	CK2_1-HE
3425	chrX	3597483	3597547	chrX	3619723	3619788	roo	12	22241	14.5	4.5	9.5	1.1	22305	chrX	3597483	intron	AstA-R1 +	chrX	3608636	intron	AstA-R1 +	chrX	3619788	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	CK2_1-HE
3426	chrX	3597560	3597582	chrX	3619782	3619823	roo	7	22238	8.5	17.5	13.0	0.5	22263	chrX	3597560	intron	AstA-R1 +	chrX	3608692	intron	AstA-R1 +	chrX	3619823	intron	AstA-R1 +	chrX_7_3605001	chrX_3605001	CK2_1-HE
3434	chrX	3726699	3726797	chrX	3730170	3730234	NOF	7	3447	0.0	0.0	0.0	7.0	3535	chrX	3726699	intron	tlk +	chrX	3728466	intron	tlk +	chrX	3730234	intron	tlk +	chrX_7_3725001	chrX_3725001	CK2_1-HE
3440	chrX	3842260	3842323	chrX	3842570	3842635	pogo	28	310	11.5	6.0	8.8	2.9	375	chrX	3842260	intron	ec +	chrX	3842448	intron	ec +	chrX	3842635	intron	ec +	chrX_28_3840001	chrX_3840001	CK2_1-HE
3448	chrX	3986878	3986895	chrX	3994559	3994576	412	9	7681	6.0	3.0	4.5	1.6	7698	chrX	3986878	intergenic	not near genes	chrX	3990727	intergenic	not near genes	chrX	3994576	intergenic	not near genes	chrX_9_3990001	chrX_3990001	CK2_1-HE
3452	chrX	4157836	4157915	chrX	4164942	4165019	297	29	7105	6.5	8.5	7.5	3.4	7183	chrX	4157836	intron	Fas2 -	chrX	4161428	intron	Fas2 -	chrX	4165019	intron	Fas2 -	chrX_29_4160001	chrX_4160001	CK2_1-HE
3466	chrX	4700339	4700406	chrX	4700753	4700820	jockey	12	413	5.0	6.0	5.5	1.8	481	chrX	4700339	3` UTR	ctp +	chrX	4700580	3` UTR	ctp +	chrX	4700820	3` UTR	ctp +	chrX_12_4700001	chrX_4700001	CK2_1-HE
3469	chrX	4763196	4763279	chrX	4763755	4763838	Stalker4	12	558	10.5	8.0	9.2	1.2	642	chrX	4763196	intergenic	not near genes	chrX	4763517	intergenic	not near genes	chrX	4763838	intergenic	not near genes	chrX_12_4760001	chrX_4760001	CK2_1-HE
3470	chrX	4792345	4792393	chrX	4792849	4792897	jockey	9	504	2.0	5.5	3.8	1.9	552	chrX	4792345	intergenic	not near genes	chrX	4792621	intergenic	not near genes	chrX	4792897	intergenic	not near genes	chrX_9_4790001	chrX_4790001	CK2_1-HE
3471	chrX	4827915	4827924	chrX	4835357	4835366	Stalker4	4	7442	25.0	11.0	18.0	0.2	7451	chrX	4827915	intergenic	not near genes	chrX	4831640	intergenic	not near genes	chrX	4835366	intergenic	not near genes	chrX_4_4830001	chrX_4830001	CK2_1-HE
3472	chrX	4827926	4827930	chrX	4835356	4835365	Stalker4	4	7435	24.5	10.5	17.5	0.2	7439	chrX	4827926	intergenic	not near genes	chrX	4831646	intergenic	not near genes	chrX	4835365	intergenic	not near genes	chrX_4_4830001	chrX_4830001	CK2_1-HE
3473	chrX	4827931	4827991	chrX	4835350	4835387	Stalker4	26	7430	12.0	9.0	10.5	2.3	7456	chrX	4827931	intergenic	not near genes	chrX	4831659	intergenic	not near genes	chrX	4835387	intergenic	not near genes	chrX_26_4830001	chrX_4830001	CK2_1-HE
3482	chrX	4989993	4990073	chrX	4997278	4997357	roo	12	7285	3.0	9.5	6.2	1.7	7364	chrX	4989993	intron	CR44833 -	chrX	4993675	intron	CR44833 -	chrX	4997357	intron	CR44833 -	chrX_12_4990001	chrX_4990001	CK2_1-HE
3484	chrX	5096221	5096237	chrX	5103840	5103857	springer	5	7620	0.0	3.5	1.8	1.8	7636	chrX	5096221	intron,intron	CG15465 +,rg +	chrX	5100039	intron,intron	CG15465 +,rg +	chrX	5103857	intron,intron	CG15465 +,rg +	chrX_5_5100001	chrX_5100001	CK2_1-HE
3485	chrX	5096250	5096256	chrX	5103838	5103876	springer	4	7612	0.0	3.5	1.8	1.4	7626	chrX	5096250	intron,intron	CG15465 +,rg +	chrX	5100063	intron,intron	CG15465 +,rg +	chrX	5103876	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	CK2_1-HE
3492	chrX	5338645	5338654	chrX	5339969	5339978	jockey	4	1324	9.5	2.0	5.8	0.6	1333	chrX	5338645	intergenic	not near genes	chrX	5339312	intergenic	not near genes	chrX	5339978	intergenic	SK +	chrX_4_5335001	chrX_5335001	CK2_1-HE
3493	chrX	5338662	5338674	chrX	5339986	5339993	jockey	5	1323	9.0	3.0	6.0	0.7	1331	chrX	5338662	intergenic	not near genes	chrX	5339328	intergenic	not near genes	chrX	5339993	intergenic	SK +	chrX_5_5335001	chrX_5335001	CK2_1-HE
3494	chrX	5338688	5338735	chrX	5339964	5340029	jockey	9	1312	3.5	2.0	2.8	2.4	1341	chrX	5338688	intergenic	not near genes	chrX	5339358	intergenic	not near genes	chrX	5340029	intergenic	SK +	chrX_9_5335001	chrX_5335001	CK2_1-HE
3500	chrX	5481066	5481088	chrX	5485091	5485113	I-element	17	4024	0.0	3.5	1.8	6.1	4047	chrX	5481066	intron	SPR +	chrX	5483090	intron	SPR +	chrX	5485113	intron	SPR +	chrX_17_5480001	chrX_5480001	CK2_1-HE
3506	chrX	5727353	5727415	chrX	5732163	5732225	Doc	15	4810	8.0	8.5	8.2	1.6	4872	chrX	5727353	intron	CG32758 -	chrX	5729789	intron	CG32758 -	chrX	5732225	intron	CG32758 -	chrX_15_5725001	chrX_5725001	CK2_1-HE
3510	chrX	5883748	5883819	chrX	5884060	5884132	pogo	11	312	11.0	4.0	7.5	1.3	384	chrX	5883748	intron	CR45668 -	chrX	5883940	intron	CR45668 -	chrX	5884132	intron	CR45668 -	chrX_11_5880001	chrX_5880001	CK2_1-HE
3511	chrX	5884091	5884173	chrX	5884403	5884462	pogo	21	310	4.0	3.5	3.8	4.4	371	chrX	5884091	intron	CR45668 -	chrX	5884276	intron	CR45668 -	chrX	5884462	intron	CR45668 -	chrX_21_5880001	chrX_5880001	CK2_1-HE
3523	chrX	6171534	6171599	chrX	6179038	6179103	Quasimodo	12	7503	7.0	7.0	7.0	1.5	7569	chrX	6171534	intron	Ca-alpha1T -	chrX	6175318	intron	Ca-alpha1T -	chrX	6179103	intron	Ca-alpha1T -	chrX_12_6175001	chrX_6175001	CK2_1-HE
3528	chrX	6392811	6392884	chrX	6397645	6397720	Doc	22	4835	9.0	8.0	8.5	2.3	4909	chrX	6392811	intergenic	not near genes	chrX	6395266	intergenic	not near genes	chrX	6397720	intergenic	not near genes	chrX_22_6395001	chrX_6395001	CK2_1-HE
3531	chrX	6429955	6429960	chrX	6435499	6435502	Rt1c	4	5543	28.0	29.5	28.8	0.1	5547	chrX	6429955	intron	CG42340 -	chrX	6432728	intron	CG42340 -	chrX	6435502	intron	CG42340 -	chrX_4_6430001	chrX_6430001	CK2_1-HE
3532	chrX	6429961	6429963	chrX	6435497	6435504	Rt1c	4	5540	27.5	29.0	28.2	0.1	5543	chrX	6429961	intron	CG42340 -	chrX	6432732	intron	CG42340 -	chrX	6435504	intron	CG42340 -	chrX_4_6430001	chrX_6430001	CK2_1-HE
3533	chrX	6429964	6429992	chrX	6435487	6435536	Rt1c	19	5541	20.5	26.0	23.2	0.8	5572	chrX	6429964	intron	CG42340 -	chrX	6432750	intron	CG42340 -	chrX	6435536	intron	CG42340 -	chrX_19_6430001	chrX_6430001	CK2_1-HE
3534	chrX	6445255	6445322	chrX	6451084	6451151	297	6	5829	8.5	3.0	5.8	0.9	5896	chrX	6445255	intron	CG42340 -	chrX	6448203	intron	CG42340 -	chrX	6451151	intron	CG42340 -	chrX_6_6445001	chrX_6445001	CK2_1-HE
3536	chrX	6562760	6562844	chrX	6571309	6571382	Tirant	26	8546	5.5	13.0	9.2	2.5	8622	chrX	6562760	intron	CG34417 +	chrX	6567071	intron	CG34417 +	chrX	6571382	intron	CG34417 +	chrX_26_6565001	chrX_6565001	CK2_1-HE
3551	chrX	7023551	7023617	chrX	7031012	7031076	Tabor	11	7461	5.5	4.0	4.8	1.9	7525	chrX	7023551	intron	CG12541 -	chrX	7027314	intron	CG12541 -	chrX	7031076	intron	CG12541 -	chrX_11_7025001	chrX_7025001	CK2_1-HE
3553	chrX	7125219	7125262	chrX	7134449	7134492	roo	13	9230	0.0	14.0	7.0	1.6	9273	chrX	7125219	intergenic	not near genes	chrX	7129856	intergenic	not near genes	chrX	7134492	intergenic	not near genes	chrX_13_7125001	chrX_7125001	CK2_1-HE
3562	chrX	7480763	7480809	chrX	7482347	7482372	jockey	12	1577	10.5	24.5	17.5	0.6	1609	chrX	7480763	intergenic	not near genes	chrX	7481568	intergenic	not near genes	chrX	7482372	intergenic	not near genes	chrX_12_7480001	chrX_7480001	CK2_1-HE
3565	chrX	7702847	7702923	chrX	7703355	7703432	jockey	57	507	17.5	15.5	16.5	3.3	585	chrX	7702847	intron	CHES-1-like -	chrX	7703140	intron	CHES-1-like -	chrX	7703432	intron	CHES-1-like -	chrX_57_7700001	chrX_7700001	CK2_1-HE
3566	chrX	7784197	7784251	chrX	7784540	7784618	jockey	7	368	5.5	11.0	8.2	0.8	421	chrX	7784197	intergenic	not near genes	chrX	7784408	intergenic	not near genes	chrX	7784618	intergenic	not near genes	chrX_7_7780001	chrX_7780001	CK2_1-HE
3570	chrX	7845661	7845744	chrX	7847223	7847306	hopper2	16	1562	10.0	5.5	7.8	1.8	1645	chrX	7845661	intergenic	not near genes	chrX	7846484	intergenic	not near genes	chrX	7847306	intergenic	not near genes	chrX_16_7845001	chrX_7845001	CK2_1-HE
3573	chrX	8031375	8031439	chrX	8035755	8035819	Juan	19	4380	1.0	7.5	4.2	3.7	4444	chrX	8031375	intergenic	not near genes	chrX	8033597	intergenic	not near genes	chrX	8035819	3` UTR	CG2233 -	chrX_19_8030001	chrX_8030001	CK2_1-HE
3583	chrX	8364791	8364867	chrX	8365259	8365335	BS	14	467	4.5	6.0	5.2	2.3	544	chrX	8364791	intron	nAChRalpha3 -	chrX	8365063	intron	nAChRalpha3 -	chrX	8365335	intron	nAChRalpha3 -	chrX_14_8365001	chrX_8365001	CK2_1-HE
3597	chrX	8922278	8922349	chrX	8922768	8922850	jockey	20	496	10.5	5.5	8.0	2.2	572	chrX	8922278	intron	rdgA +	chrX	8922564	intron	rdgA +	chrX	8922850	intron	rdgA +	chrX_20_8920001	chrX_8920001	CK2_1-HE
3599	chrX	8948733	8948754	chrX	8956314	8956335	roo	6	7580	0.0	8.5	4.2	1.2	7602	chrX	8948733	intron	rdgA +	chrX	8952534	intron	rdgA +	chrX	8956335	intron	rdgA +	chrX_6_8950001	chrX_8950001	CK2_1-HE
3623	chrX	9508077	9508152	chrX	9509666	9509741	jockey	22	1588	5.0	8.0	6.5	2.9	1664	chrX	9508077	intron	CG32700 -	chrX	9508909	intron	CG32700 -	chrX	9509741	intron	CG32700 -	chrX_22_9505001	chrX_9505001	CK2_1-HE
3628	chrX	9575737	9575808	chrX	9576124	9576203	mdg3	23	391	11.5	8.0	9.8	2.1	466	chrX	9575737	intron,exon	CG32699 -,CG42395 -	chrX	9575970	intron,intron	CG32699 -,CG42395 -	chrX	9576203	intron,5` UTR	CG32699 -,CG42395 -	chrX_23_9575001	chrX_9575001	CK2_1-HE
3637	chrX	10138160	10138227	chrX	10145735	10145802	412	20	7572	6.0	3.5	4.8	3.4	7642	chrX	10138160	intron,intron	RhoU +,CR44894 -	chrX	10141981	intron,intron	RhoU +,CR44894 -	chrX	10145802	intron,intron	RhoU +,CR44894 -	chrX_20_10140001	chrX_10140001	CK2_1-HE
3647	chrX	10550799	10550872	chrX	10552337	10552409	hobo	19	1537	4.0	8.0	6.0	2.7	1610	chrX	10550799	intron	spri -	chrX	10551604	intron	spri -	chrX	10552409	intron	spri -	chrX_19_10550001	chrX_10550001	CK2_1-HE
3649	chrX	10685986	10686072	chrX	10691192	10691261	roo	26	5207	9.5	0.5	5.0	4.3	5275	chrX	10685986	intron	X11Lbeta +	chrX	10688624	intron	X11Lbeta +	chrX	10691261	intron	X11Lbeta +	chrX_26_10685001	chrX_10685001	CK2_1-HE
3652	chrX	10772617	10772691	chrX	10772771	10772824	Tirant	6	150	3.0	3.5	3.2	1.4	207	chrX	10772617	5` UTR	CG15211 +	chrX	10772720	intron	CG15211 +	chrX	10772824	intron	CG15211 +	chrX_6_10770001	chrX_10770001	CK2_1-HE
3653	chrX	11095957	11096013	chrX	11103130	11103186	HMS-Beagle	7	7173	5.5	8.0	6.8	0.9	7229	chrX	11095957	intergenic	not near genes	chrX	11099572	intergenic	not near genes	chrX	11103186	intron	CG42249 +	chrX_7_11095001	chrX_11095001	CK2_1-HE
3655	chrX	11268538	11268575	chrX	11270102	11270139	hopper2	9	1564	3.0	8.5	5.8	1.3	1601	chrX	11268538	intron	CG44422 -	chrX	11269338	intron	CG44422 -	chrX	11270139	intron	CG44422 -	chrX_9_11265001	chrX_11265001	CK2_1-HE
3658	chrX	11312007	11312076	chrX	11319430	11319500	Stalker2	6	7417	3.0	5.5	4.2	1.2	7493	chrX	11312007	intergenic	not near genes	chrX	11315754	intergenic	not near genes	chrX	11319500	intergenic	not near genes	chrX_6_11315001	chrX_11315001	CK2_1-HE
3665	chrX	11534994	11535042	chrX	11541518	11541581	Burdock	17	6539	16.5	7.5	12.0	1.3	6587	chrX	11534994	intron	Drak +	chrX	11538288	intron	Drak +	chrX	11541581	intron	Drak +	chrX_17_11535001	chrX_11535001	CK2_1-HE
3666	chrX	11571393	11571463	chrX	11571705	11571775	pogo	17	310	10.0	9.0	9.5	1.6	382	chrX	11571393	3` UTR,3` UTR	CG11699 +,Kmn1 -	chrX	11571584	3` UTR	Kmn1 -	chrX	11571775	3` UTR	Kmn1 -	chrX_17_11570001	chrX_11570001	CK2_1-HE
3668	chrX	11633361	11633435	chrX	11640486	11640560	297	24	7124	15.0	18.0	16.5	1.4	7199	chrX	11633361	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640560	intron	Ptp10D +	chrX_24_11635001	chrX_11635001	CK2_1-HE
3669	chrX	11645057	11645111	chrX	11648297	11648351	NOF	12	3239	6.0	1.0	3.5	2.7	3294	chrX	11645057	intron	Ptp10D +	chrX	11646704	intron	Ptp10D +	chrX	11648351	intron	Ptp10D +	chrX_12_11645001	chrX_11645001	CK2_1-HE
3711	chrX	12930546	12930598	chrX	12937733	12937785	HMS-Beagle	6	7187	1.5	7.5	4.5	1.1	7239	chrX	12930546	intron	fne +	chrX	12934166	intron	fne +	chrX	12937785	intron	fne +	chrX_6_12930001	chrX_12930001	CK2_1-HE
3721	chrX	13402957	13403040	chrX	13403154	13403196	X-element	6	191	4.5	4.5	4.5	1.1	239	chrX	13402957	intergenic	CG12725 -	chrX	13403076	intergenic	CG12725 -	chrX	13403196	intergenic	CG12725 -	chrX_6_13400001	chrX_13400001	CK2_1-HE
3722	chrX	13429394	13429481	chrX	13430614	13430701	jockey	16	1220	1.5	4.0	2.8	4.2	1307	chrX	13429394	intergenic	not near genes	chrX	13430048	intergenic	not near genes	chrX	13430701	intergenic	not near genes	chrX_16_13430001	chrX_13430001	CK2_1-HE
3724	chrX	13463588	13463662	chrX	13469236	13469310	mdg3	30	5648	6.5	3.5	5.0	5.0	5722	chrX	13463588	intron	Neto +	chrX	13466449	intron	Neto +	chrX	13469310	intron	Neto +	chrX_30_13465001	chrX_13465001	CK2_1-HE
3742	chrX	14104963	14105046	chrX	14114185	14114268	roo	21	9218	3.5	3.5	3.5	4.7	9305	chrX	14104963	intergenic	not near genes	chrX	14109616	intergenic	not near genes	chrX	14114268	5` UTR	CR44657 +	chrX_21_14105001	chrX_14105001	CK2_1-HE
3752	chrX	14416251	14416321	chrX	14421090	14421160	F-element	13	4839	8.0	9.5	8.8	1.3	4909	chrX	14416251	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421160	intron	dpr8 +	chrX_13_14415001	chrX_14415001	CK2_1-HE
3756	chrX	14636403	14636478	chrX	14641915	14641987	I-element	35	5510	10.0	12.0	11.0	2.9	5584	chrX	14636403	intron	NetA -	chrX	14639195	intron	NetA -	chrX	14641987	intron	NetA -	chrX_35_14635001	chrX_14635001	CK2_1-HE
3760	chrX	14777984	14778025	chrX	14782852	14782893	Doc	7	4868	9.0	6.5	7.8	0.8	4909	chrX	14777984	intergenic	CG5347 +	chrX	14780438	intergenic	not near genes	chrX	14782893	intergenic	Ag5r2 -	chrX_7_14780001	chrX_14780001	CK2_1-HE
3761	chrX	14778030	14778047	chrX	14782846	14782915	Doc	7	4861	6.5	6.5	6.5	0.9	4885	chrX	14778030	intergenic	CG5347 +	chrX	14780472	intergenic	not near genes	chrX	14782915	intergenic	Ag5r2 -	chrX_7_14780001	chrX_14780001	CK2_1-HE
3763	chrX	14818706	14818745	chrX	14823981	14824019	copia	9	5274	9.0	7.0	8.0	1.0	5313	chrX	14818706	intron	rut -	chrX	14821362	intron	rut -	chrX	14824019	intron	rut -	chrX_9_14820001	chrX_14820001	CK2_1-HE
3764	chrX	14818749	14818778	chrX	14823976	14824053	copia	11	5263	6.5	7.0	6.8	1.4	5304	chrX	14818749	intron	rut -	chrX	14821401	intron	rut -	chrX	14824053	intron	rut -	chrX_11_14820001	chrX_14820001	CK2_1-HE
3767	chrX	14936801	14936871	chrX	14946129	14946199	roo	15	9328	11.5	6.5	9.0	1.5	9398	chrX	14936801	intron	pdgy -	chrX	14941500	intron	pdgy -	chrX	14946199	intron	pdgy -	chrX_15_14940001	chrX_14940001	CK2_1-HE
3780	chrX	15273645	15273656	chrX	15274883	15274894	1360	6	1237	26.0	7.0	16.5	0.3	1249	chrX	15273645	intergenic	not near genes	chrX	15274270	intergenic	not near genes	chrX	15274894	intergenic	not near genes	chrX_6_15270001	chrX_15270001	CK2_1-HE
3781	chrX	15273657	15273723	chrX	15274882	15274961	1360	14	1235	12.0	7.0	9.5	1.3	1304	chrX	15273657	intergenic	not near genes	chrX	15274309	intergenic	not near genes	chrX	15274961	intergenic	not near genes	chrX_14_15270001	chrX_15270001	CK2_1-HE
3784	chrX	15412995	15413030	chrX	15417368	15417403	Juan	12	4371	22.0	0.0	11.0	1.0	4408	chrX	15412995	intron	Cngl -	chrX	15415199	intron	Cngl -	chrX	15417403	intron	Cngl -	chrX_12_15415001	chrX_15415001	CK2_1-HE
3785	chrX	15421855	15421947	chrX	15423437	15423529	pogo	29	1580	5.0	1.5	3.2	6.9	1674	chrX	15421855	intron	Cngl -	chrX	15422692	intron	Cngl -	chrX	15423529	intron	Cngl -	chrX_29_15420001	chrX_15420001	CK2_1-HE
3786	chrX	15435616	15435688	chrX	15436104	15436192	rover	7	490	1.5	11.0	6.2	1.0	576	chrX	15435616	intron	Cngl -	chrX	15435904	intron	Cngl -	chrX	15436192	intron	Cngl -	chrX_7_15435001	chrX_15435001	CK2_1-HE
3802	chrX	16222712	16222767	chrX	16231133	16231188	roo	4	8421	4.5	0.0	2.2	1.2	8476	chrX	16222712	intergenic	not near genes	chrX	16226950	intergenic	not near genes	chrX	16231188	intergenic	not near genes	chrX_4_16225001	chrX_16225001	CK2_1-HE
3805	chrX	16340614	16340657	chrX	16349829	16349872	roo	10	9215	2.0	2.0	2.0	3.3	9258	chrX	16340614	3` UTR	Dsp1 +	chrX	16345243	intergenic	not near genes	chrX	16349872	intergenic	sl +	chrX_10_16345001	chrX_16345001	CK2_1-HE
3807	chrX	16492580	16492657	chrX	16498228	16498305	mdg3	24	5648	12.5	10.5	11.5	1.9	5725	chrX	16492580	intron	para -	chrX	16495442	intron	para -	chrX	16498305	exon	para -	chrX_24_16495001	chrX_16495001	CK2_1-HE
3821	chrX	16935949	16936003	chrX	16936437	16936450	jockey	5	480	1.5	1.0	1.2	2.3	501	chrX	16935949	intron	CG4928 +	chrX	16936200	intron	CG4928 +	chrX	16936450	intron	CG4928 +	chrX_5_16935001	chrX_16935001	CK2_1-HE
3827	chrX	17195161	17195227	chrX	17200318	17200384	flea	13	5157	6.0	5.5	5.8	1.9	5223	chrX	17195161	3` UTR	baz +	chrX	17197772	3` UTR	baz +	chrX	17200384	3` UTR	baz +	chrX_13_17195001	chrX_17195001	CK2_1-HE
3841	chrX	17431294	17431336	chrX	17431705	17431748	jockey	16	411	15.0	10.5	12.8	1.2	454	chrX	17431294	intron	CG12994 -	chrX	17431521	intron	CG12994 -	chrX	17431748	intron	CG12994 -	chrX_16_17430001	chrX_17430001	CK2_1-HE
3848	chrX	17556890	17556951	chrX	17557452	17557521	mdg1	4	556	5.0	6.0	5.5	0.6	631	chrX	17556890	intron	CG43658 -	chrX	17557206	intron	CG43658 -	chrX	17557521	intron	CG43658 -	chrX_4_17555001	chrX_17555001	CK2_1-HE
3849	chrX	17556957	17556971	chrX	17557520	17557536	mdg1	4	566	2.5	18.0	10.2	0.4	579	chrX	17556957	intron	CG43658 -	chrX	17557246	intron	CG43658 -	chrX	17557536	intron	CG43658 -	chrX_4_17555001	chrX_17555001	CK2_1-HE
3855	chrX	17792922	17792971	chrX	17796269	17796340	flea	6	3362	3.0	4.5	3.8	1.2	3418	chrX	17792922	intron	OdsH +	chrX	17794631	intron	OdsH +	chrX	17796340	intron	OdsH +	chrX_6_17790001	chrX_17790001	CK2_1-HE
3869	chrX	18194007	18194085	chrX	18194613	18194691	BS	45	606	13.0	9.5	11.2	3.7	684	chrX	18194007	intron	Frq2 +	chrX	18194349	intron	Frq2 +	chrX	18194691	intron	Frq2 +	chrX_45_18190001	chrX_18190001	CK2_1-HE
3871	chrX	18429409	18429514	chrX	18434803	18434889	Transpac	22	5387	0.0	5.5	2.8	5.8	5480	chrX	18429409	intergenic	not near genes	chrX	18432149	intergenic	not near genes	chrX	18434889	intergenic	not near genes	chrX_22_18430001	chrX_18430001	CK2_1-HE
3884	chrX	18957010	18957070	chrX	18965737	18965797	roo	4	8727	1.0	0.5	0.8	2.2	8787	chrX	18957010	intron	CG43759 +	chrX	18961404	intron	CG43759 +	chrX	18965797	intron	CG43759 +	chrX_4_18960001	chrX_18960001	CK2_1-HE
3887	chrX	19060357	19060424	chrX	19065210	19065279	Doc	21	4855	17.0	11.5	14.2	1.4	4922	chrX	19060357	intron	CG14190 +	chrX	19062818	intron	CG14190 +	chrX	19065279	intron	CG14190 +	chrX_21_19060001	chrX_19060001	CK2_1-HE
3893	chrX	19136497	19136582	chrX	19143477	19143506	412	11	6982	4.5	10.5	7.5	1.3	7009	chrX	19136497	intergenic	not near genes	chrX	19140002	intergenic	not near genes	chrX	19143506	3` UTR	RhoGAP18B -	chrX_11_19140001	chrX_19140001	CK2_1-HE
3902	chrX	19356935	19357023	chrX	19358447	19358557	NOF	18	1524	9.5	0.5	5.0	3.0	1622	chrX	19356935	intron	kek5 +	chrX	19357746	intron	kek5 +	chrX	19358557	intron	kek5 +	chrX_18_19355001	chrX_19355001	CK2_1-HE
3904	chrX	19380098	19380174	chrX	19380410	19380486	pogo	31	311	13.5	9.5	11.5	2.5	388	chrX	19380098	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380486	intron	kek5 +	chrX_31_19380001	chrX_19380001	CK2_1-HE
3907	chrX	19472071	19472140	chrX	19472713	19472781	jockey	11	641	4.0	4.5	4.2	2.1	710	chrX	19472071	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472781	intergenic	not near genes	chrX_11_19470001	chrX_19470001	CK2_1-HE
3918	chrX	19710014	19710096	chrX	19711870	19711927	S-element	26	1853	9.5	8.5	9.0	2.6	1913	chrX	19710014	intron	meso18E -	chrX	19710970	intron	meso18E -	chrX	19711927	intron	meso18E -	chrX_26_19710001	chrX_19710001	CK2_1-HE
3922	chrX	19797285	19797334	chrX	19804669	19804716	Stalker4	19	7383	24.5	13.5	19.0	0.9	7431	chrX	19797285	intergenic	not near genes	chrX	19801000	intergenic	not near genes	chrX	19804716	intergenic	not near genes	chrX_19_19800001	chrX_19800001	CK2_1-HE
3963	chrX	20504067	20504151	chrX	20505659	20505742	transib2	19	1592	7.5	4.5	6.0	2.7	1675	chrX	20504067	intron	RhoGAP19D -	chrX	20504904	intron	RhoGAP19D -	chrX	20505742	intron	RhoGAP19D -	chrX_19_20500001	chrX_20500001	CK2_1-HE
3971	chrX	20836682	20836743	chrX	20844355	20844416	roo	14	7670	4.5	5.5	5.0	2.3	7734	chrX	20836682	intron	shakB -	chrX	20840549	intron	shakB -	chrX	20844416	intron	shakB -	chrX_14_20840001	chrX_20840001	CK2_1-HE
3973	chrX	20940665	20940717	chrX	20942205	20942234	hobo	21	1538	9.5	8.0	8.8	2.1	1569	chrX	20940665	intergenic	not near genes	chrX	20941450	intergenic	not near genes	chrX	20942234	intergenic	not near genes	chrX_21_20940001	chrX_20940001	CK2_1-HE
3977	chrX	21061797	21061880	chrX	21062356	21062436	roo	9	557	2.0	4.5	3.2	2.1	639	chrX	21061797	intron	bves +	chrX	21062116	intron	bves +	chrX	21062436	intron,3` UTR	bves +,CG32512 -	chrX_9_21060001	chrX_21060001	CK2_1-HE
3983	chrX	21254591	21254672	chrX	21255578	21255661	hopper2	28	987	2.5	0.0	1.2	12.7	1070	chrX	21254591	intron	CG32521 -	chrX	21255126	intron	CG32521 -	chrX	21255661	intron	CG32521 -	chrX_28_21255001	chrX_21255001	CK2_1-HE
3991	chrX	21458651	21458698	chrX	21464158	21464205	Ivk	16	5507	16.5	12.5	14.5	1.0	5554	chrX	21458651	intergenic	not near genes	chrX	21461428	intergenic	not near genes	chrX	21464205	intergenic	not near genes	chrX_16_21460001	chrX_21460001	CK2_1-HE
3999	chrX	22522584	22522634	chrX	22525475	22525525	NOF	7	2891	4.0	3.5	3.8	1.5	2941	chrX	22522584	intron	CG17600 +	chrX	22524054	intron	CG17600 +	chrX	22525525	intron	CG17600 +	chrX_7_22520001	chrX_22520001	CK2_1-HE
4005	chrX	22697447	22697510	chrX	22701815	22701878	Juan	21	4368	14.0	15.5	14.8	1.3	4431	chrX	22697447	intron	CR44997 +	chrX	22699662	intron	CR44997 +	chrX	22701878	intron	CR44997 +	chrX_21_22695001	chrX_22695001	CK2_1-HE
4007	chrX	22771446	22771525	chrX	22774808	22774887	297	15	3360	2.0	3.5	2.8	3.9	3441	chrX	22771446	intron	CR44997 +	chrX	22773166	intron	CR44997 +	chrX	22774887	intron	CR44997 +	chrX_15_22770001	chrX_22770001	CK2_1-HE
4011	chrX	22811937	22812005	chrX	22816780	22816848	F-element	24	4843	14.0	16.5	15.2	1.5	4911	chrX	22811937	intergenic	CG12446 -	chrX	22814392	intergenic	not near genes	chrX	22816848	intergenic	not near genes	chrX_24_22810001	chrX_22810001	CK2_1-HE
4019	chrX	22987060	22987103	chrX	22989790	22989833	Burdock	4	2730	1.0	5.0	3.0	1.0	2773	chrX	22987060	intron,intron	stnA -,stnB -	chrX	22988446	intron,intron	stnA -,stnB -	chrX	22989833	intron,intron	stnA -,stnB -	chrX_4_22985001	chrX_22985001	CK2_1-HE
4020	chrX	22996263	22996325	chrX	23003557	23003630	roo	7	7303	10.5	6.5	8.5	0.7	7367	chrX	22996263	intron,intron	stnA -,stnB -	chrX	22999946	intron,intron	stnA -,stnB -	chrX	23003630	intron,intron	stnA -,stnB -	chrX_7_22995001	chrX_22995001	CK2_1-HE